Mock Version: 2.16
ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/python-bcbio-nextgen.spec'], chrootPath='/var/lib/mock/centos-stream+epel-9-x86_64-1647842778.799513/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x7f0674c67820>timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.ovcp1ebw:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueprintOutput=True)
Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.ovcp1ebw:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']
Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', 'f46a18d0312a49608cf91e3f9ba6a40e', '-D', '/var/lib/mock/centos-stream+epel-9-x86_64-1647842778.799513/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.ovcp1ebw:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;<mock-chroot>\\007"', '--setenv=PS1=<mock-chroot> \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/python-bcbio-nextgen.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1647734400
Wrote: /builddir/build/SRPMS/python-bcbio-nextgen-1.1.5-1.el9.src.rpm
Child return code was: 0
ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -br --target x86_64 --nodeps /builddir/build/SPECS/python-bcbio-nextgen.spec'], chrootPath='/var/lib/mock/centos-stream+epel-9-x86_64-1647842778.799513/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x7f0674c67820>timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.ovcp1ebw:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueraiseExc=FalseprintOutput=True)
Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.ovcp1ebw:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']
Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', 'bc186d2c1dae4d7a9e4b3d9264297770', '-D', '/var/lib/mock/centos-stream+epel-9-x86_64-1647842778.799513/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.ovcp1ebw:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;<mock-chroot>\\007"', '--setenv=PS1=<mock-chroot> \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -br --target x86_64 --nodeps /builddir/build/SPECS/python-bcbio-nextgen.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1647734400
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.0ApoE3
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf bcbio-nextgen-1.1.5
+ /usr/bin/gzip -dc /builddir/build/SOURCES/bcbio-nextgen-1.1.5.tar.gz
+ /usr/bin/tar -xof -
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd bcbio-nextgen-1.1.5
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.2NWZq0
+ umask 022
+ cd /builddir/build/BUILD
+ cd bcbio-nextgen-1.1.5
+ echo pyproject-rpm-macros
+ echo python3-devel
+ echo 'python3dist(pip) >= 19'
+ echo 'python3dist(packaging)'
+ '[' -f pyproject.toml ']'
+ '[' -f setup.py ']'
+ echo 'python3dist(setuptools) >= 40.8'
+ echo 'python3dist(wheel)'
+ rm -rfv '*.dist-info/'
+ '[' -f /usr/bin/python3 ']'
+ RPM_TOXENV=py39
+ HOSTNAME=rpmbuild
+ /usr/bin/python3 -s /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 -r
Handling setuptools >= 40.8 from default build backend
Requirement satisfied: setuptools >= 40.8
   (installed: setuptools 53.0.0)
Handling wheel from default build backend
Requirement not satisfied: wheel
Exiting dependency generation pass: build backend
+ RPM_EC=0
++ jobs -p
+ exit 0
Wrote: /builddir/build/SRPMS/python-bcbio-nextgen-1.1.5-1.el9.buildreqs.nosrc.rpm
Child return code was: 11
Dynamic buildrequires detected
Going to install missing buildrequires. See root.log for details.
ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -br --target x86_64 --nodeps /builddir/build/SPECS/python-bcbio-nextgen.spec'], chrootPath='/var/lib/mock/centos-stream+epel-9-x86_64-1647842778.799513/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x7f0674c67820>timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.ovcp1ebw:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueraiseExc=FalseprintOutput=True)
Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.ovcp1ebw:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']
Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '452a015b6a114d71a603d417cf872909', '-D', '/var/lib/mock/centos-stream+epel-9-x86_64-1647842778.799513/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.ovcp1ebw:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;<mock-chroot>\\007"', '--setenv=PS1=<mock-chroot> \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -br --target x86_64 --nodeps /builddir/build/SPECS/python-bcbio-nextgen.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1647734400
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.TMRMqO
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf bcbio-nextgen-1.1.5
+ /usr/bin/tar -xof -
+ /usr/bin/gzip -dc /builddir/build/SOURCES/bcbio-nextgen-1.1.5.tar.gz
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd bcbio-nextgen-1.1.5
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.dDpFHi
+ umask 022
+ cd /builddir/build/BUILD
+ cd bcbio-nextgen-1.1.5
+ echo pyproject-rpm-macros
+ echo python3-devel
+ echo 'python3dist(pip) >= 19'
+ echo 'python3dist(packaging)'
+ '[' -f pyproject.toml ']'
+ '[' -f setup.py ']'
+ echo 'python3dist(setuptools) >= 40.8'
+ echo 'python3dist(wheel)'
+ rm -rfv '*.dist-info/'
+ '[' -f /usr/bin/python3 ']'
+ RPM_TOXENV=py39
+ HOSTNAME=rpmbuild
+ /usr/bin/python3 -s /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 -r
Handling setuptools >= 40.8 from default build backend
Requirement satisfied: setuptools >= 40.8
   (installed: setuptools 53.0.0)
Handling wheel from default build backend
Requirement satisfied: wheel
   (installed: wheel 0.36.2)
warning: no files found matching 'config/*.ini'
HOOK STDOUT: running egg_info
HOOK STDOUT: writing bcbio_nextgen.egg-info/PKG-INFO
HOOK STDOUT: writing dependency_links to bcbio_nextgen.egg-info/dependency_links.txt
HOOK STDOUT: writing top-level names to bcbio_nextgen.egg-info/top_level.txt
HOOK STDOUT: reading manifest file 'bcbio_nextgen.egg-info/SOURCES.txt'
HOOK STDOUT: reading manifest template 'MANIFEST.in'
HOOK STDOUT: adding license file 'LICENSE.txt'
HOOK STDOUT: writing manifest file 'bcbio_nextgen.egg-info/SOURCES.txt'
Handling wheel from get_requires_for_build_wheel
Requirement satisfied: wheel
   (installed: wheel 0.36.2)
warning: no files found matching 'config/*.ini'
HOOK STDOUT: running dist_info
HOOK STDOUT: writing bcbio_nextgen.egg-info/PKG-INFO
HOOK STDOUT: writing dependency_links to bcbio_nextgen.egg-info/dependency_links.txt
HOOK STDOUT: writing top-level names to bcbio_nextgen.egg-info/top_level.txt
HOOK STDOUT: reading manifest file 'bcbio_nextgen.egg-info/SOURCES.txt'
HOOK STDOUT: reading manifest template 'MANIFEST.in'
HOOK STDOUT: adding license file 'LICENSE.txt'
HOOK STDOUT: writing manifest file 'bcbio_nextgen.egg-info/SOURCES.txt'
HOOK STDOUT: creating '/builddir/build/BUILD/bcbio-nextgen-1.1.5/bcbio_nextgen.dist-info'
HOOK STDOUT: adding license file "LICENSE.txt" (matched pattern "LICEN[CS]E*")
+ RPM_EC=0
++ jobs -p
+ exit 0
Wrote: /builddir/build/SRPMS/python-bcbio-nextgen-1.1.5-1.el9.buildreqs.nosrc.rpm
Child return code was: 11
Dynamic buildrequires detected
Going to install missing buildrequires. See root.log for details.
ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -ba --noprep --target x86_64 --nodeps /builddir/build/SPECS/python-bcbio-nextgen.spec'], chrootPath='/var/lib/mock/centos-stream+epel-9-x86_64-1647842778.799513/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x7f0674c67820>timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.ovcp1ebw:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueprintOutput=True)
Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.ovcp1ebw:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']
Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', 'c165b004678c4e289ef4b7eef7c3924a', '-D', '/var/lib/mock/centos-stream+epel-9-x86_64-1647842778.799513/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.ovcp1ebw:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;<mock-chroot>\\007"', '--setenv=PS1=<mock-chroot> \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -ba --noprep --target x86_64 --nodeps /builddir/build/SPECS/python-bcbio-nextgen.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1647734400
Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.kys4Mw
+ umask 022
+ cd /builddir/build/BUILD
+ cd bcbio-nextgen-1.1.5
+ echo pyproject-rpm-macros
+ echo python3-devel
+ echo 'python3dist(pip) >= 19'
+ echo 'python3dist(packaging)'
+ '[' -f pyproject.toml ']'
+ '[' -f setup.py ']'
+ echo 'python3dist(setuptools) >= 40.8'
+ echo 'python3dist(wheel)'
+ rm -rfv bcbio_nextgen.dist-info/
removed 'bcbio_nextgen.dist-info/LICENSE.txt'
removed 'bcbio_nextgen.dist-info/METADATA'
removed 'bcbio_nextgen.dist-info/top_level.txt'
removed directory 'bcbio_nextgen.dist-info/'
+ '[' -f /usr/bin/python3 ']'
+ RPM_TOXENV=py39
+ HOSTNAME=rpmbuild
+ /usr/bin/python3 -s /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 -r
Handling setuptools >= 40.8 from default build backend
Requirement satisfied: setuptools >= 40.8
   (installed: setuptools 53.0.0)
Handling wheel from default build backend
Requirement satisfied: wheel
   (installed: wheel 0.36.2)
warning: no files found matching 'config/*.ini'
HOOK STDOUT: running egg_info
HOOK STDOUT: creating bcbio_nextgen.egg-info
HOOK STDOUT: writing bcbio_nextgen.egg-info/PKG-INFO
HOOK STDOUT: writing dependency_links to bcbio_nextgen.egg-info/dependency_links.txt
HOOK STDOUT: writing top-level names to bcbio_nextgen.egg-info/top_level.txt
HOOK STDOUT: writing manifest file 'bcbio_nextgen.egg-info/SOURCES.txt'
HOOK STDOUT: reading manifest file 'bcbio_nextgen.egg-info/SOURCES.txt'
HOOK STDOUT: reading manifest template 'MANIFEST.in'
HOOK STDOUT: adding license file 'LICENSE.txt'
HOOK STDOUT: writing manifest file 'bcbio_nextgen.egg-info/SOURCES.txt'
Handling wheel from get_requires_for_build_wheel
Requirement satisfied: wheel
   (installed: wheel 0.36.2)
warning: no files found matching 'config/*.ini'
HOOK STDOUT: running dist_info
HOOK STDOUT: writing bcbio_nextgen.egg-info/PKG-INFO
HOOK STDOUT: writing dependency_links to bcbio_nextgen.egg-info/dependency_links.txt
HOOK STDOUT: writing top-level names to bcbio_nextgen.egg-info/top_level.txt
HOOK STDOUT: reading manifest file 'bcbio_nextgen.egg-info/SOURCES.txt'
HOOK STDOUT: reading manifest template 'MANIFEST.in'
HOOK STDOUT: adding license file 'LICENSE.txt'
HOOK STDOUT: writing manifest file 'bcbio_nextgen.egg-info/SOURCES.txt'
HOOK STDOUT: creating '/builddir/build/BUILD/bcbio-nextgen-1.1.5/bcbio_nextgen.dist-info'
HOOK STDOUT: adding license file "LICENSE.txt" (matched pattern "LICEN[CS]E*")
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.AdGark
+ umask 022
+ cd /builddir/build/BUILD
+ cd bcbio-nextgen-1.1.5
+ mkdir -p /builddir/build/BUILD/bcbio-nextgen-1.1.5/.pyproject-builddir
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 '
+ TMPDIR=/builddir/build/BUILD/bcbio-nextgen-1.1.5/.pyproject-builddir
+ /usr/bin/python3 -m pip wheel --wheel-dir /builddir/build/BUILD/bcbio-nextgen-1.1.5/pyproject-wheeldir --no-deps --use-pep517 --no-build-isolation --disable-pip-version-check --no-clean --progress-bar off --verbose .
Processing /builddir/build/BUILD/bcbio-nextgen-1.1.5
  Preparing metadata (pyproject.toml): started
  Running command Preparing metadata (pyproject.toml)
  running dist_info
  creating /builddir/build/BUILD/bcbio-nextgen-1.1.5/.pyproject-builddir/pip-modern-metadata-ht294duq/bcbio_nextgen.egg-info
  writing /builddir/build/BUILD/bcbio-nextgen-1.1.5/.pyproject-builddir/pip-modern-metadata-ht294duq/bcbio_nextgen.egg-info/PKG-INFO
  writing dependency_links to /builddir/build/BUILD/bcbio-nextgen-1.1.5/.pyproject-builddir/pip-modern-metadata-ht294duq/bcbio_nextgen.egg-info/dependency_links.txt
  writing top-level names to /builddir/build/BUILD/bcbio-nextgen-1.1.5/.pyproject-builddir/pip-modern-metadata-ht294duq/bcbio_nextgen.egg-info/top_level.txt
  writing manifest file '/builddir/build/BUILD/bcbio-nextgen-1.1.5/.pyproject-builddir/pip-modern-metadata-ht294duq/bcbio_nextgen.egg-info/SOURCES.txt'
  reading manifest file '/builddir/build/BUILD/bcbio-nextgen-1.1.5/.pyproject-builddir/pip-modern-metadata-ht294duq/bcbio_nextgen.egg-info/SOURCES.txt'
  reading manifest template 'MANIFEST.in'
  warning: no files found matching 'config/*.ini'
  adding license file 'LICENSE.txt'
  writing manifest file '/builddir/build/BUILD/bcbio-nextgen-1.1.5/.pyproject-builddir/pip-modern-metadata-ht294duq/bcbio_nextgen.egg-info/SOURCES.txt'
  creating '/builddir/build/BUILD/bcbio-nextgen-1.1.5/.pyproject-builddir/pip-modern-metadata-ht294duq/bcbio_nextgen.dist-info'
  adding license file "LICENSE.txt" (matched pattern "LICEN[CS]E*")
  Preparing metadata (pyproject.toml): finished with status 'done'
Building wheels for collected packages: bcbio-nextgen
  Building wheel for bcbio-nextgen (pyproject.toml): started
  Running command Building wheel for bcbio-nextgen (pyproject.toml)
  running bdist_wheel
  running build
  running build_py
  creating build
  creating build/lib
  creating build/lib/bcbio
  copying bcbio/install.py -> build/lib/bcbio
  copying bcbio/__init__.py -> build/lib/bcbio
  copying bcbio/setpath.py -> build/lib/bcbio
  copying bcbio/utils.py -> build/lib/bcbio
  creating build/lib/bcbio/hmmer
  copying bcbio/hmmer/search.py -> build/lib/bcbio/hmmer
  copying bcbio/hmmer/__init__.py -> build/lib/bcbio/hmmer
  creating build/lib/bcbio/log
  copying bcbio/log/__init__.py -> build/lib/bcbio/log
  copying bcbio/log/logbook_zmqpush.py -> build/lib/bcbio/log
  creating build/lib/bcbio/bed
  copying bcbio/bed/__init__.py -> build/lib/bcbio/bed
  creating build/lib/bcbio/srna
  copying bcbio/srna/qc.py -> build/lib/bcbio/srna
  copying bcbio/srna/group.py -> build/lib/bcbio/srna
  copying bcbio/srna/mirge.py -> build/lib/bcbio/srna
  copying bcbio/srna/__init__.py -> build/lib/bcbio/srna
  copying bcbio/srna/sample.py -> build/lib/bcbio/srna
  copying bcbio/srna/umis.py -> build/lib/bcbio/srna
  copying bcbio/srna/mirdeep.py -> build/lib/bcbio/srna
  creating build/lib/bcbio/graph
  copying bcbio/graph/__init__.py -> build/lib/bcbio/graph
  copying bcbio/graph/graph.py -> build/lib/bcbio/graph
  copying bcbio/graph/collectl.py -> build/lib/bcbio/graph
  creating build/lib/bcbio/picard
  copying bcbio/picard/__init__.py -> build/lib/bcbio/picard
  copying bcbio/picard/metrics.py -> build/lib/bcbio/picard
  copying bcbio/picard/utils.py -> build/lib/bcbio/picard
  creating build/lib/bcbio/bam
  copying bcbio/bam/cram.py -> build/lib/bcbio/bam
  copying bcbio/bam/readstats.py -> build/lib/bcbio/bam
  copying bcbio/bam/__init__.py -> build/lib/bcbio/bam
  copying bcbio/bam/trim.py -> build/lib/bcbio/bam
  copying bcbio/bam/fastq.py -> build/lib/bcbio/bam
  copying bcbio/bam/callable.py -> build/lib/bcbio/bam
  copying bcbio/bam/ref.py -> build/lib/bcbio/bam
  copying bcbio/bam/counts.py -> build/lib/bcbio/bam
  copying bcbio/bam/coverage.py -> build/lib/bcbio/bam
  copying bcbio/bam/skewer.py -> build/lib/bcbio/bam
  copying bcbio/bam/fasta.py -> build/lib/bcbio/bam
  creating build/lib/bcbio/galaxy
  copying bcbio/galaxy/nglims.py -> build/lib/bcbio/galaxy
  copying bcbio/galaxy/__init__.py -> build/lib/bcbio/galaxy
  copying bcbio/galaxy/loc.py -> build/lib/bcbio/galaxy
  copying bcbio/galaxy/api.py -> build/lib/bcbio/galaxy
  creating build/lib/bcbio/server
  copying bcbio/server/main.py -> build/lib/bcbio/server
  copying bcbio/server/__init__.py -> build/lib/bcbio/server
  copying bcbio/server/background.py -> build/lib/bcbio/server
  copying bcbio/server/run.py -> build/lib/bcbio/server
  creating build/lib/bcbio/illumina
  copying bcbio/illumina/machine.py -> build/lib/bcbio/illumina
  copying bcbio/illumina/transfer.py -> build/lib/bcbio/illumina
  copying bcbio/illumina/__init__.py -> build/lib/bcbio/illumina
  copying bcbio/illumina/flowcell.py -> build/lib/bcbio/illumina
  copying bcbio/illumina/demultiplex.py -> build/lib/bcbio/illumina
  copying bcbio/illumina/samplesheet.py -> build/lib/bcbio/illumina
  creating build/lib/bcbio/chipseq
  copying bcbio/chipseq/__init__.py -> build/lib/bcbio/chipseq
  copying bcbio/chipseq/peaks.py -> build/lib/bcbio/chipseq
  copying bcbio/chipseq/macs2.py -> build/lib/bcbio/chipseq
  creating build/lib/bcbio/heterogeneity
  copying bcbio/heterogeneity/__init__.py -> build/lib/bcbio/heterogeneity
  copying bcbio/heterogeneity/theta.py -> build/lib/bcbio/heterogeneity
  copying bcbio/heterogeneity/bubbletree.py -> build/lib/bcbio/heterogeneity
  copying bcbio/heterogeneity/phylowgs.py -> build/lib/bcbio/heterogeneity
  copying bcbio/heterogeneity/chromhacks.py -> build/lib/bcbio/heterogeneity
  copying bcbio/heterogeneity/loh.py -> build/lib/bcbio/heterogeneity
  creating build/lib/bcbio/cwl
  copying bcbio/cwl/main.py -> build/lib/bcbio/cwl
  copying bcbio/cwl/hpc.py -> build/lib/bcbio/cwl
  copying bcbio/cwl/__init__.py -> build/lib/bcbio/cwl
  copying bcbio/cwl/create.py -> build/lib/bcbio/cwl
  copying bcbio/cwl/tool.py -> build/lib/bcbio/cwl
  copying bcbio/cwl/inspect.py -> build/lib/bcbio/cwl
  copying bcbio/cwl/defs.py -> build/lib/bcbio/cwl
  copying bcbio/cwl/workflow.py -> build/lib/bcbio/cwl
  copying bcbio/cwl/cwlutils.py -> build/lib/bcbio/cwl
  creating build/lib/bcbio/broad
  copying bcbio/broad/__init__.py -> build/lib/bcbio/broad
  copying bcbio/broad/picardrun.py -> build/lib/bcbio/broad
  copying bcbio/broad/metrics.py -> build/lib/bcbio/broad
  creating build/lib/bcbio/rnaseq
  copying bcbio/rnaseq/variation.py -> build/lib/bcbio/rnaseq
  copying bcbio/rnaseq/qc.py -> build/lib/bcbio/rnaseq
  copying bcbio/rnaseq/pizzly.py -> build/lib/bcbio/rnaseq
  copying bcbio/rnaseq/dexseq.py -> build/lib/bcbio/rnaseq
  copying bcbio/rnaseq/cufflinks.py -> build/lib/bcbio/rnaseq
  copying bcbio/rnaseq/ericscript.py -> build/lib/bcbio/rnaseq
  copying bcbio/rnaseq/salmon.py -> build/lib/bcbio/rnaseq
  copying bcbio/rnaseq/__init__.py -> build/lib/bcbio/rnaseq
  copying bcbio/rnaseq/spikein.py -> build/lib/bcbio/rnaseq
  copying bcbio/rnaseq/oncofuse.py -> build/lib/bcbio/rnaseq
  copying bcbio/rnaseq/cpat.py -> build/lib/bcbio/rnaseq
  copying bcbio/rnaseq/bcbiornaseq.py -> build/lib/bcbio/rnaseq
  copying bcbio/rnaseq/express.py -> build/lib/bcbio/rnaseq
  copying bcbio/rnaseq/count.py -> build/lib/bcbio/rnaseq
  copying bcbio/rnaseq/umi.py -> build/lib/bcbio/rnaseq
  copying bcbio/rnaseq/annotate_gtf.py -> build/lib/bcbio/rnaseq
  copying bcbio/rnaseq/singlecellexperiment.py -> build/lib/bcbio/rnaseq
  copying bcbio/rnaseq/rsem.py -> build/lib/bcbio/rnaseq
  copying bcbio/rnaseq/kallisto.py -> build/lib/bcbio/rnaseq
  copying bcbio/rnaseq/featureCounts.py -> build/lib/bcbio/rnaseq
  copying bcbio/rnaseq/rapmap.py -> build/lib/bcbio/rnaseq
  copying bcbio/rnaseq/stringtie.py -> build/lib/bcbio/rnaseq
  copying bcbio/rnaseq/gtf.py -> build/lib/bcbio/rnaseq
  copying bcbio/rnaseq/sailfish.py -> build/lib/bcbio/rnaseq
  creating build/lib/bcbio/pipeline
  copying bcbio/pipeline/variation.py -> build/lib/bcbio/pipeline
  copying bcbio/pipeline/run_info.py -> build/lib/bcbio/pipeline
  copying bcbio/pipeline/qcsummary.py -> build/lib/bcbio/pipeline
  copying bcbio/pipeline/main.py -> build/lib/bcbio/pipeline
  copying bcbio/pipeline/genome.py -> build/lib/bcbio/pipeline
  copying bcbio/pipeline/__init__.py -> build/lib/bcbio/pipeline
  copying bcbio/pipeline/tools.py -> build/lib/bcbio/pipeline
  copying bcbio/pipeline/config_utils.py -> build/lib/bcbio/pipeline
  copying bcbio/pipeline/fastq.py -> build/lib/bcbio/pipeline
  copying bcbio/pipeline/archive.py -> build/lib/bcbio/pipeline
  copying bcbio/pipeline/cleanbam.py -> build/lib/bcbio/pipeline
  copying bcbio/pipeline/sample.py -> build/lib/bcbio/pipeline
  copying bcbio/pipeline/alignment.py -> build/lib/bcbio/pipeline
  copying bcbio/pipeline/region.py -> build/lib/bcbio/pipeline
  copying bcbio/pipeline/sra.py -> build/lib/bcbio/pipeline
  copying bcbio/pipeline/merge.py -> build/lib/bcbio/pipeline
  copying bcbio/pipeline/rnaseq.py -> build/lib/bcbio/pipeline
  copying bcbio/pipeline/version.py -> build/lib/bcbio/pipeline
  copying bcbio/pipeline/shared.py -> build/lib/bcbio/pipeline
  copying bcbio/pipeline/datadict.py -> build/lib/bcbio/pipeline
  creating build/lib/bcbio/variation
  copying bcbio/variation/validateplot.py -> build/lib/bcbio/variation
  copying bcbio/variation/deepvariant.py -> build/lib/bcbio/variation
  copying bcbio/variation/genotype.py -> build/lib/bcbio/variation
  copying bcbio/variation/prioritize.py -> build/lib/bcbio/variation
  copying bcbio/variation/vcfanno.py -> build/lib/bcbio/variation
  copying bcbio/variation/__init__.py -> build/lib/bcbio/variation
  copying bcbio/variation/normalize.py -> build/lib/bcbio/variation
  copying bcbio/variation/peddy.py -> build/lib/bcbio/variation
  copying bcbio/variation/platypus.py -> build/lib/bcbio/variation
  copying bcbio/variation/gatkfilter.py -> build/lib/bcbio/variation
  copying bcbio/variation/population.py -> build/lib/bcbio/variation
  copying bcbio/variation/strelka2.py -> build/lib/bcbio/variation
  copying bcbio/variation/annotation.py -> build/lib/bcbio/variation
  copying bcbio/variation/germline.py -> build/lib/bcbio/variation
  copying bcbio/variation/scalpel.py -> build/lib/bcbio/variation
  copying bcbio/variation/mutect2.py -> build/lib/bcbio/variation
  copying bcbio/variation/vfilter.py -> build/lib/bcbio/variation
  copying bcbio/variation/octopus.py -> build/lib/bcbio/variation
  copying bcbio/variation/realign.py -> build/lib/bcbio/variation
  copying bcbio/variation/ploidy.py -> build/lib/bcbio/variation
  copying bcbio/variation/cortex.py -> build/lib/bcbio/variation
  copying bcbio/variation/naming.py -> build/lib/bcbio/variation
  copying bcbio/variation/bedutils.py -> build/lib/bcbio/variation
  copying bcbio/variation/vcfutils.py -> build/lib/bcbio/variation
  copying bcbio/variation/recalibrate.py -> build/lib/bcbio/variation
  copying bcbio/variation/smcounter2.py -> build/lib/bcbio/variation
  copying bcbio/variation/samtools.py -> build/lib/bcbio/variation
  copying bcbio/variation/joint.py -> build/lib/bcbio/variation
  copying bcbio/variation/coverage.py -> build/lib/bcbio/variation
  copying bcbio/variation/gatk.py -> build/lib/bcbio/variation
  copying bcbio/variation/bamprep.py -> build/lib/bcbio/variation
  copying bcbio/variation/ensemble.py -> build/lib/bcbio/variation
  copying bcbio/variation/gatkjoint.py -> build/lib/bcbio/variation
  copying bcbio/variation/validate.py -> build/lib/bcbio/variation
  copying bcbio/variation/vardict.py -> build/lib/bcbio/variation
  copying bcbio/variation/pisces.py -> build/lib/bcbio/variation
  copying bcbio/variation/mutect.py -> build/lib/bcbio/variation
  copying bcbio/variation/split.py -> build/lib/bcbio/variation
  copying bcbio/variation/sentieon.py -> build/lib/bcbio/variation
  copying bcbio/variation/freebayes.py -> build/lib/bcbio/variation
  copying bcbio/variation/damage.py -> build/lib/bcbio/variation
  copying bcbio/variation/multi.py -> build/lib/bcbio/variation
  copying bcbio/variation/varscan.py -> build/lib/bcbio/variation
  copying bcbio/variation/qsnp.py -> build/lib/bcbio/variation
  copying bcbio/variation/effects.py -> build/lib/bcbio/variation
  creating build/lib/bcbio/structural
  copying bcbio/structural/regions.py -> build/lib/bcbio/structural
  copying bcbio/structural/gatkcnv.py -> build/lib/bcbio/structural
  copying bcbio/structural/manta.py -> build/lib/bcbio/structural
  copying bcbio/structural/prioritize.py -> build/lib/bcbio/structural
  copying bcbio/structural/delly.py -> build/lib/bcbio/structural
  copying bcbio/structural/seq2c.py -> build/lib/bcbio/structural
  copying bcbio/structural/__init__.py -> build/lib/bcbio/structural
  copying bcbio/structural/cn_mops.py -> build/lib/bcbio/structural
  copying bcbio/structural/annotate.py -> build/lib/bcbio/structural
  copying bcbio/structural/pindel.py -> build/lib/bcbio/structural
  copying bcbio/structural/hydra.py -> build/lib/bcbio/structural
  copying bcbio/structural/purecn.py -> build/lib/bcbio/structural
  copying bcbio/structural/gridss.py -> build/lib/bcbio/structural
  copying bcbio/structural/lumpy.py -> build/lib/bcbio/structural
  copying bcbio/structural/plot.py -> build/lib/bcbio/structural
  copying bcbio/structural/titancna.py -> build/lib/bcbio/structural
  copying bcbio/structural/cnvkit.py -> build/lib/bcbio/structural
  copying bcbio/structural/metasv.py -> build/lib/bcbio/structural
  copying bcbio/structural/convert.py -> build/lib/bcbio/structural
  copying bcbio/structural/battenberg.py -> build/lib/bcbio/structural
  copying bcbio/structural/purple.py -> build/lib/bcbio/structural
  copying bcbio/structural/validate.py -> build/lib/bcbio/structural
  copying bcbio/structural/wham.py -> build/lib/bcbio/structural
  copying bcbio/structural/shared.py -> build/lib/bcbio/structural
  creating build/lib/bcbio/provenance
  copying bcbio/provenance/programs.py -> build/lib/bcbio/provenance
  copying bcbio/provenance/data.py -> build/lib/bcbio/provenance
  copying bcbio/provenance/__init__.py -> build/lib/bcbio/provenance
  copying bcbio/provenance/diagnostics.py -> build/lib/bcbio/provenance
  copying bcbio/provenance/do.py -> build/lib/bcbio/provenance
  copying bcbio/provenance/versioncheck.py -> build/lib/bcbio/provenance
  copying bcbio/provenance/profile.py -> build/lib/bcbio/provenance
  copying bcbio/provenance/system.py -> build/lib/bcbio/provenance
  creating build/lib/bcbio/ngsalign
  copying bcbio/ngsalign/mosaik.py -> build/lib/bcbio/ngsalign
  copying bcbio/ngsalign/bbmap.py -> build/lib/bcbio/ngsalign
  copying bcbio/ngsalign/alignprep.py -> build/lib/bcbio/ngsalign
  copying bcbio/ngsalign/novoalign.py -> build/lib/bcbio/ngsalign
  copying bcbio/ngsalign/minimap2.py -> build/lib/bcbio/ngsalign
  copying bcbio/ngsalign/bowtie.py -> build/lib/bcbio/ngsalign
  copying bcbio/ngsalign/postalign.py -> build/lib/bcbio/ngsalign
  copying bcbio/ngsalign/__init__.py -> build/lib/bcbio/ngsalign
  copying bcbio/ngsalign/snap.py -> build/lib/bcbio/ngsalign
  copying bcbio/ngsalign/star.py -> build/lib/bcbio/ngsalign
  copying bcbio/ngsalign/bwa.py -> build/lib/bcbio/ngsalign
  copying bcbio/ngsalign/rtg.py -> build/lib/bcbio/ngsalign
  copying bcbio/ngsalign/tophat.py -> build/lib/bcbio/ngsalign
  copying bcbio/ngsalign/hisat2.py -> build/lib/bcbio/ngsalign
  copying bcbio/ngsalign/bowtie2.py -> build/lib/bcbio/ngsalign
  creating build/lib/bcbio/workflow
  copying bcbio/workflow/template.py -> build/lib/bcbio/workflow
  copying bcbio/workflow/xprize.py -> build/lib/bcbio/workflow
  copying bcbio/workflow/__init__.py -> build/lib/bcbio/workflow
  copying bcbio/workflow/stormseq.py -> build/lib/bcbio/workflow
  creating build/lib/bcbio/distributed
  copying bcbio/distributed/objectstore.py -> build/lib/bcbio/distributed
  copying bcbio/distributed/prun.py -> build/lib/bcbio/distributed
  copying bcbio/distributed/multitasks.py -> build/lib/bcbio/distributed
  copying bcbio/distributed/clargs.py -> build/lib/bcbio/distributed
  copying bcbio/distributed/__init__.py -> build/lib/bcbio/distributed
  copying bcbio/distributed/ipython.py -> build/lib/bcbio/distributed
  copying bcbio/distributed/ipythontasks.py -> build/lib/bcbio/distributed
  copying bcbio/distributed/resources.py -> build/lib/bcbio/distributed
  copying bcbio/distributed/runfn.py -> build/lib/bcbio/distributed
  copying bcbio/distributed/clusterk.py -> build/lib/bcbio/distributed
  copying bcbio/distributed/split.py -> build/lib/bcbio/distributed
  copying bcbio/distributed/transaction.py -> build/lib/bcbio/distributed
  copying bcbio/distributed/multi.py -> build/lib/bcbio/distributed
  creating build/lib/bcbio/hla
  copying bcbio/hla/__init__.py -> build/lib/bcbio/hla
  copying bcbio/hla/bwakit.py -> build/lib/bcbio/hla
  copying bcbio/hla/groups.py -> build/lib/bcbio/hla
  copying bcbio/hla/optitype.py -> build/lib/bcbio/hla
  creating build/lib/bcbio/qc
  copying bcbio/qc/srna.py -> build/lib/bcbio/qc
  copying bcbio/qc/variant.py -> build/lib/bcbio/qc
  copying bcbio/qc/kraken.py -> build/lib/bcbio/qc
  copying bcbio/qc/__init__.py -> build/lib/bcbio/qc
  copying bcbio/qc/contamination.py -> build/lib/bcbio/qc
  copying bcbio/qc/picard.py -> build/lib/bcbio/qc
  copying bcbio/qc/atropos.py -> build/lib/bcbio/qc
  copying bcbio/qc/umi.py -> build/lib/bcbio/qc
  copying bcbio/qc/qsignature.py -> build/lib/bcbio/qc
  copying bcbio/qc/samtools.py -> build/lib/bcbio/qc
  copying bcbio/qc/chipseq.py -> build/lib/bcbio/qc
  copying bcbio/qc/coverage.py -> build/lib/bcbio/qc
  copying bcbio/qc/qualimap.py -> build/lib/bcbio/qc
  copying bcbio/qc/multiqc.py -> build/lib/bcbio/qc
  copying bcbio/qc/fastqc.py -> build/lib/bcbio/qc
  copying bcbio/qc/viral.py -> build/lib/bcbio/qc
  copying bcbio/qc/preseq.py -> build/lib/bcbio/qc
  copying bcbio/qc/damage.py -> build/lib/bcbio/qc
  creating build/lib/bcbio/upload
  copying bcbio/upload/__init__.py -> build/lib/bcbio/upload
  copying bcbio/upload/irods.py -> build/lib/bcbio/upload
  copying bcbio/upload/galaxy.py -> build/lib/bcbio/upload
  copying bcbio/upload/filesystem.py -> build/lib/bcbio/upload
  copying bcbio/upload/shared.py -> build/lib/bcbio/upload
  copying bcbio/upload/s3.py -> build/lib/bcbio/upload
  creating build/lib/bcbio/pipeline/disambiguate
  copying bcbio/pipeline/disambiguate/__init__.py -> build/lib/bcbio/pipeline/disambiguate
  copying bcbio/pipeline/disambiguate/run.py -> build/lib/bcbio/pipeline/disambiguate
  creating build/lib/tests
  creating build/lib/tests/unit
  copying tests/unit/data.py -> build/lib/tests/unit
  copying tests/unit/__init__.py -> build/lib/tests/unit
  copying tests/unit/test_alignprep.py -> build/lib/tests/unit
  copying tests/unit/conftest.py -> build/lib/tests/unit
  creating build/lib/tests/integration
  copying tests/integration/test_automated_analysis.py -> build/lib/tests/integration
  copying tests/integration/__init__.py -> build/lib/tests/integration
  copying tests/integration/test_S3_pipelines.py -> build/lib/tests/integration
  copying tests/integration/test_pipeline.py -> build/lib/tests/integration
  copying tests/integration/test_SequencingDump.py -> build/lib/tests/integration
  creating build/lib/tests/unit/rnaseq
  copying tests/unit/rnaseq/__init__.py -> build/lib/tests/unit/rnaseq
  copying tests/unit/rnaseq/test_ericscript.py -> build/lib/tests/unit/rnaseq
  creating build/lib/tests/unit/pipeline
  copying tests/unit/pipeline/test_rnaseq.py -> build/lib/tests/unit/pipeline
  copying tests/unit/pipeline/__init__.py -> build/lib/tests/unit/pipeline
  copying tests/unit/pipeline/test_datadict.py -> build/lib/tests/unit/pipeline
  creating build/lib/tests/unit/ngsalign
  copying tests/unit/ngsalign/__init__.py -> build/lib/tests/unit/ngsalign
  creating build/lib/tests/unit/distributed
  copying tests/unit/distributed/__init__.py -> build/lib/tests/unit/distributed
  copying tests/unit/distributed/test_transaction.py -> build/lib/tests/unit/distributed
  creating build/lib/tests/unit/upload
  copying tests/unit/upload/test_upload.py -> build/lib/tests/unit/upload
  copying tests/unit/upload/__init__.py -> build/lib/tests/unit/upload
  creating build/lib/tests/integration/rnaseq
  copying tests/integration/rnaseq/__init__.py -> build/lib/tests/integration/rnaseq
  copying tests/integration/rnaseq/test_ericscript.py -> build/lib/tests/integration/rnaseq
  running egg_info
  creating bcbio_nextgen.egg-info
  writing bcbio_nextgen.egg-info/PKG-INFO
  writing dependency_links to bcbio_nextgen.egg-info/dependency_links.txt
  writing top-level names to bcbio_nextgen.egg-info/top_level.txt
  writing manifest file 'bcbio_nextgen.egg-info/SOURCES.txt'
  reading manifest file 'bcbio_nextgen.egg-info/SOURCES.txt'
  reading manifest template 'MANIFEST.in'
  warning: no files found matching 'config/*.ini'
  adding license file 'LICENSE.txt'
  writing manifest file 'bcbio_nextgen.egg-info/SOURCES.txt'
  creating build/lib/bcbio/data
  creating build/lib/bcbio/data/umis
  copying bcbio/data/umis/10x_v2-cb1.txt.gz -> build/lib/bcbio/data/umis
  copying bcbio/data/umis/10x_v2-transform.json -> build/lib/bcbio/data/umis
  copying bcbio/data/umis/dropseq-transform.json -> build/lib/bcbio/data/umis
  copying bcbio/data/umis/harvard-indrop-v2-cb1.txt.gz -> build/lib/bcbio/data/umis
  copying bcbio/data/umis/harvard-indrop-v2-cb2.txt.gz -> build/lib/bcbio/data/umis
  copying bcbio/data/umis/harvard-indrop-v2-transform.json -> build/lib/bcbio/data/umis
  copying bcbio/data/umis/harvard-indrop-v3-cb1.txt.gz -> build/lib/bcbio/data/umis
  copying bcbio/data/umis/harvard-indrop-v3-cb2.txt.gz -> build/lib/bcbio/data/umis
  copying bcbio/data/umis/harvard-indrop-v3-sample_barcodes.txt.gz -> build/lib/bcbio/data/umis
  copying bcbio/data/umis/harvard-indrop-v3-transform.json -> build/lib/bcbio/data/umis
  copying bcbio/data/umis/harvard-scrb-cb1.txt.gz -> build/lib/bcbio/data/umis
  copying bcbio/data/umis/harvard-scrb-transform.json -> build/lib/bcbio/data/umis
  copying bcbio/data/umis/icell8-cb1.txt.gz -> build/lib/bcbio/data/umis
  copying bcbio/data/umis/icell8-transform.json -> build/lib/bcbio/data/umis
  copying bcbio/data/umis/qiagen_smallRNA_umi-transform.json -> build/lib/bcbio/data/umis
  copying bcbio/data/umis/surecell-cb1.txt.gz -> build/lib/bcbio/data/umis
  copying bcbio/data/umis/surecell-cb2.txt.gz -> build/lib/bcbio/data/umis
  copying bcbio/data/umis/surecell-cb3.txt.gz -> build/lib/bcbio/data/umis
  copying bcbio/data/umis/surecell-transform.json -> build/lib/bcbio/data/umis
  running build_scripts
  creating build/scripts-3.9
  copying and adjusting scripts/bcbio_nextgen.py -> build/scripts-3.9
  copying and adjusting scripts/bcbio_setup_genome.py -> build/scripts-3.9
  copying and adjusting scripts/bcbio_prepare_samples.py -> build/scripts-3.9
  copying and adjusting scripts/bcbio_fastq_umi_prep.py -> build/scripts-3.9
  copying and adjusting scripts/cwltool2wdl.py -> build/scripts-3.9
  changing mode of build/scripts-3.9/bcbio_nextgen.py from 644 to 755
  changing mode of build/scripts-3.9/bcbio_setup_genome.py from 644 to 755
  changing mode of build/scripts-3.9/bcbio_prepare_samples.py from 644 to 755
  changing mode of build/scripts-3.9/bcbio_fastq_umi_prep.py from 644 to 755
  changing mode of build/scripts-3.9/cwltool2wdl.py from 644 to 755
  installing to build/bdist.linux-x86_64/wheel
  running install
  running install_lib
  creating build/bdist.linux-x86_64
  creating build/bdist.linux-x86_64/wheel
  creating build/bdist.linux-x86_64/wheel/tests
  creating build/bdist.linux-x86_64/wheel/tests/integration
  creating build/bdist.linux-x86_64/wheel/tests/integration/rnaseq
  copying build/lib/tests/integration/rnaseq/test_ericscript.py -> build/bdist.linux-x86_64/wheel/tests/integration/rnaseq
  copying build/lib/tests/integration/rnaseq/__init__.py -> build/bdist.linux-x86_64/wheel/tests/integration/rnaseq
  copying build/lib/tests/integration/test_SequencingDump.py -> build/bdist.linux-x86_64/wheel/tests/integration
  copying build/lib/tests/integration/test_pipeline.py -> build/bdist.linux-x86_64/wheel/tests/integration
  copying build/lib/tests/integration/test_S3_pipelines.py -> build/bdist.linux-x86_64/wheel/tests/integration
  copying build/lib/tests/integration/__init__.py -> build/bdist.linux-x86_64/wheel/tests/integration
  copying build/lib/tests/integration/test_automated_analysis.py -> build/bdist.linux-x86_64/wheel/tests/integration
  creating build/bdist.linux-x86_64/wheel/tests/unit
  creating build/bdist.linux-x86_64/wheel/tests/unit/upload
  copying build/lib/tests/unit/upload/__init__.py -> build/bdist.linux-x86_64/wheel/tests/unit/upload
  copying build/lib/tests/unit/upload/test_upload.py -> build/bdist.linux-x86_64/wheel/tests/unit/upload
  creating build/bdist.linux-x86_64/wheel/tests/unit/distributed
  copying build/lib/tests/unit/distributed/test_transaction.py -> build/bdist.linux-x86_64/wheel/tests/unit/distributed
  copying build/lib/tests/unit/distributed/__init__.py -> build/bdist.linux-x86_64/wheel/tests/unit/distributed
  creating build/bdist.linux-x86_64/wheel/tests/unit/ngsalign
  copying build/lib/tests/unit/ngsalign/__init__.py -> build/bdist.linux-x86_64/wheel/tests/unit/ngsalign
  creating build/bdist.linux-x86_64/wheel/tests/unit/pipeline
  copying build/lib/tests/unit/pipeline/test_datadict.py -> build/bdist.linux-x86_64/wheel/tests/unit/pipeline
  copying build/lib/tests/unit/pipeline/__init__.py -> build/bdist.linux-x86_64/wheel/tests/unit/pipeline
  copying build/lib/tests/unit/pipeline/test_rnaseq.py -> build/bdist.linux-x86_64/wheel/tests/unit/pipeline
  creating build/bdist.linux-x86_64/wheel/tests/unit/rnaseq
  copying build/lib/tests/unit/rnaseq/test_ericscript.py -> build/bdist.linux-x86_64/wheel/tests/unit/rnaseq
  copying build/lib/tests/unit/rnaseq/__init__.py -> build/bdist.linux-x86_64/wheel/tests/unit/rnaseq
  copying build/lib/tests/unit/conftest.py -> build/bdist.linux-x86_64/wheel/tests/unit
  copying build/lib/tests/unit/test_alignprep.py -> build/bdist.linux-x86_64/wheel/tests/unit
  copying build/lib/tests/unit/__init__.py -> build/bdist.linux-x86_64/wheel/tests/unit
  copying build/lib/tests/unit/data.py -> build/bdist.linux-x86_64/wheel/tests/unit
  creating build/bdist.linux-x86_64/wheel/bcbio
  creating build/bdist.linux-x86_64/wheel/bcbio/data
  creating build/bdist.linux-x86_64/wheel/bcbio/data/umis
  copying build/lib/bcbio/data/umis/surecell-transform.json -> build/bdist.linux-x86_64/wheel/bcbio/data/umis
  copying build/lib/bcbio/data/umis/surecell-cb3.txt.gz -> build/bdist.linux-x86_64/wheel/bcbio/data/umis
  copying build/lib/bcbio/data/umis/surecell-cb2.txt.gz -> build/bdist.linux-x86_64/wheel/bcbio/data/umis
  copying build/lib/bcbio/data/umis/surecell-cb1.txt.gz -> build/bdist.linux-x86_64/wheel/bcbio/data/umis
  copying build/lib/bcbio/data/umis/qiagen_smallRNA_umi-transform.json -> build/bdist.linux-x86_64/wheel/bcbio/data/umis
  copying build/lib/bcbio/data/umis/icell8-transform.json -> build/bdist.linux-x86_64/wheel/bcbio/data/umis
  copying build/lib/bcbio/data/umis/icell8-cb1.txt.gz -> build/bdist.linux-x86_64/wheel/bcbio/data/umis
  copying build/lib/bcbio/data/umis/harvard-scrb-transform.json -> build/bdist.linux-x86_64/wheel/bcbio/data/umis
  copying build/lib/bcbio/data/umis/harvard-scrb-cb1.txt.gz -> build/bdist.linux-x86_64/wheel/bcbio/data/umis
  copying build/lib/bcbio/data/umis/harvard-indrop-v3-transform.json -> build/bdist.linux-x86_64/wheel/bcbio/data/umis
  copying build/lib/bcbio/data/umis/harvard-indrop-v3-sample_barcodes.txt.gz -> build/bdist.linux-x86_64/wheel/bcbio/data/umis
  copying build/lib/bcbio/data/umis/harvard-indrop-v3-cb2.txt.gz -> build/bdist.linux-x86_64/wheel/bcbio/data/umis
  copying build/lib/bcbio/data/umis/harvard-indrop-v3-cb1.txt.gz -> build/bdist.linux-x86_64/wheel/bcbio/data/umis
  copying build/lib/bcbio/data/umis/harvard-indrop-v2-transform.json -> build/bdist.linux-x86_64/wheel/bcbio/data/umis
  copying build/lib/bcbio/data/umis/harvard-indrop-v2-cb2.txt.gz -> build/bdist.linux-x86_64/wheel/bcbio/data/umis
  copying build/lib/bcbio/data/umis/harvard-indrop-v2-cb1.txt.gz -> build/bdist.linux-x86_64/wheel/bcbio/data/umis
  copying build/lib/bcbio/data/umis/dropseq-transform.json -> build/bdist.linux-x86_64/wheel/bcbio/data/umis
  copying build/lib/bcbio/data/umis/10x_v2-transform.json -> build/bdist.linux-x86_64/wheel/bcbio/data/umis
  copying build/lib/bcbio/data/umis/10x_v2-cb1.txt.gz -> build/bdist.linux-x86_64/wheel/bcbio/data/umis
  creating build/bdist.linux-x86_64/wheel/bcbio/upload
  copying build/lib/bcbio/upload/s3.py -> build/bdist.linux-x86_64/wheel/bcbio/upload
  copying build/lib/bcbio/upload/shared.py -> build/bdist.linux-x86_64/wheel/bcbio/upload
  copying build/lib/bcbio/upload/filesystem.py -> build/bdist.linux-x86_64/wheel/bcbio/upload
  copying build/lib/bcbio/upload/galaxy.py -> build/bdist.linux-x86_64/wheel/bcbio/upload
  copying build/lib/bcbio/upload/irods.py -> build/bdist.linux-x86_64/wheel/bcbio/upload
  copying build/lib/bcbio/upload/__init__.py -> build/bdist.linux-x86_64/wheel/bcbio/upload
  creating build/bdist.linux-x86_64/wheel/bcbio/qc
  copying build/lib/bcbio/qc/damage.py -> build/bdist.linux-x86_64/wheel/bcbio/qc
  copying build/lib/bcbio/qc/preseq.py -> build/bdist.linux-x86_64/wheel/bcbio/qc
  copying build/lib/bcbio/qc/viral.py -> build/bdist.linux-x86_64/wheel/bcbio/qc
  copying build/lib/bcbio/qc/fastqc.py -> build/bdist.linux-x86_64/wheel/bcbio/qc
  copying build/lib/bcbio/qc/multiqc.py -> build/bdist.linux-x86_64/wheel/bcbio/qc
  copying build/lib/bcbio/qc/qualimap.py -> build/bdist.linux-x86_64/wheel/bcbio/qc
  copying build/lib/bcbio/qc/coverage.py -> build/bdist.linux-x86_64/wheel/bcbio/qc
  copying build/lib/bcbio/qc/chipseq.py -> build/bdist.linux-x86_64/wheel/bcbio/qc
  copying build/lib/bcbio/qc/samtools.py -> build/bdist.linux-x86_64/wheel/bcbio/qc
  copying build/lib/bcbio/qc/qsignature.py -> build/bdist.linux-x86_64/wheel/bcbio/qc
  copying build/lib/bcbio/qc/umi.py -> build/bdist.linux-x86_64/wheel/bcbio/qc
  copying build/lib/bcbio/qc/atropos.py -> build/bdist.linux-x86_64/wheel/bcbio/qc
  copying build/lib/bcbio/qc/picard.py -> build/bdist.linux-x86_64/wheel/bcbio/qc
  copying build/lib/bcbio/qc/contamination.py -> build/bdist.linux-x86_64/wheel/bcbio/qc
  copying build/lib/bcbio/qc/__init__.py -> build/bdist.linux-x86_64/wheel/bcbio/qc
  copying build/lib/bcbio/qc/kraken.py -> build/bdist.linux-x86_64/wheel/bcbio/qc
  copying build/lib/bcbio/qc/variant.py -> build/bdist.linux-x86_64/wheel/bcbio/qc
  copying build/lib/bcbio/qc/srna.py -> build/bdist.linux-x86_64/wheel/bcbio/qc
  creating build/bdist.linux-x86_64/wheel/bcbio/hla
  copying build/lib/bcbio/hla/optitype.py -> build/bdist.linux-x86_64/wheel/bcbio/hla
  copying build/lib/bcbio/hla/groups.py -> build/bdist.linux-x86_64/wheel/bcbio/hla
  copying build/lib/bcbio/hla/bwakit.py -> build/bdist.linux-x86_64/wheel/bcbio/hla
  copying build/lib/bcbio/hla/__init__.py -> build/bdist.linux-x86_64/wheel/bcbio/hla
  creating build/bdist.linux-x86_64/wheel/bcbio/distributed
  copying build/lib/bcbio/distributed/multi.py -> build/bdist.linux-x86_64/wheel/bcbio/distributed
  copying build/lib/bcbio/distributed/transaction.py -> build/bdist.linux-x86_64/wheel/bcbio/distributed
  copying build/lib/bcbio/distributed/split.py -> build/bdist.linux-x86_64/wheel/bcbio/distributed
  copying build/lib/bcbio/distributed/clusterk.py -> build/bdist.linux-x86_64/wheel/bcbio/distributed
  copying build/lib/bcbio/distributed/runfn.py -> build/bdist.linux-x86_64/wheel/bcbio/distributed
  copying build/lib/bcbio/distributed/resources.py -> build/bdist.linux-x86_64/wheel/bcbio/distributed
  copying build/lib/bcbio/distributed/ipythontasks.py -> build/bdist.linux-x86_64/wheel/bcbio/distributed
  copying build/lib/bcbio/distributed/ipython.py -> build/bdist.linux-x86_64/wheel/bcbio/distributed
  copying build/lib/bcbio/distributed/__init__.py -> build/bdist.linux-x86_64/wheel/bcbio/distributed
  copying build/lib/bcbio/distributed/clargs.py -> build/bdist.linux-x86_64/wheel/bcbio/distributed
  copying build/lib/bcbio/distributed/multitasks.py -> build/bdist.linux-x86_64/wheel/bcbio/distributed
  copying build/lib/bcbio/distributed/prun.py -> build/bdist.linux-x86_64/wheel/bcbio/distributed
  copying build/lib/bcbio/distributed/objectstore.py -> build/bdist.linux-x86_64/wheel/bcbio/distributed
  creating build/bdist.linux-x86_64/wheel/bcbio/workflow
  copying build/lib/bcbio/workflow/stormseq.py -> build/bdist.linux-x86_64/wheel/bcbio/workflow
  copying build/lib/bcbio/workflow/__init__.py -> build/bdist.linux-x86_64/wheel/bcbio/workflow
  copying build/lib/bcbio/workflow/xprize.py -> build/bdist.linux-x86_64/wheel/bcbio/workflow
  copying build/lib/bcbio/workflow/template.py -> build/bdist.linux-x86_64/wheel/bcbio/workflow
  creating build/bdist.linux-x86_64/wheel/bcbio/ngsalign
  copying build/lib/bcbio/ngsalign/bowtie2.py -> build/bdist.linux-x86_64/wheel/bcbio/ngsalign
  copying build/lib/bcbio/ngsalign/hisat2.py -> build/bdist.linux-x86_64/wheel/bcbio/ngsalign
  copying build/lib/bcbio/ngsalign/tophat.py -> build/bdist.linux-x86_64/wheel/bcbio/ngsalign
  copying build/lib/bcbio/ngsalign/rtg.py -> build/bdist.linux-x86_64/wheel/bcbio/ngsalign
  copying build/lib/bcbio/ngsalign/bwa.py -> build/bdist.linux-x86_64/wheel/bcbio/ngsalign
  copying build/lib/bcbio/ngsalign/star.py -> build/bdist.linux-x86_64/wheel/bcbio/ngsalign
  copying build/lib/bcbio/ngsalign/snap.py -> build/bdist.linux-x86_64/wheel/bcbio/ngsalign
  copying build/lib/bcbio/ngsalign/__init__.py -> build/bdist.linux-x86_64/wheel/bcbio/ngsalign
  copying build/lib/bcbio/ngsalign/postalign.py -> build/bdist.linux-x86_64/wheel/bcbio/ngsalign
  copying build/lib/bcbio/ngsalign/bowtie.py -> build/bdist.linux-x86_64/wheel/bcbio/ngsalign
  copying build/lib/bcbio/ngsalign/minimap2.py -> build/bdist.linux-x86_64/wheel/bcbio/ngsalign
  copying build/lib/bcbio/ngsalign/novoalign.py -> build/bdist.linux-x86_64/wheel/bcbio/ngsalign
  copying build/lib/bcbio/ngsalign/alignprep.py -> build/bdist.linux-x86_64/wheel/bcbio/ngsalign
  copying build/lib/bcbio/ngsalign/bbmap.py -> build/bdist.linux-x86_64/wheel/bcbio/ngsalign
  copying build/lib/bcbio/ngsalign/mosaik.py -> build/bdist.linux-x86_64/wheel/bcbio/ngsalign
  creating build/bdist.linux-x86_64/wheel/bcbio/provenance
  copying build/lib/bcbio/provenance/system.py -> build/bdist.linux-x86_64/wheel/bcbio/provenance
  copying build/lib/bcbio/provenance/profile.py -> build/bdist.linux-x86_64/wheel/bcbio/provenance
  copying build/lib/bcbio/provenance/versioncheck.py -> build/bdist.linux-x86_64/wheel/bcbio/provenance
  copying build/lib/bcbio/provenance/do.py -> build/bdist.linux-x86_64/wheel/bcbio/provenance
  copying build/lib/bcbio/provenance/diagnostics.py -> build/bdist.linux-x86_64/wheel/bcbio/provenance
  copying build/lib/bcbio/provenance/__init__.py -> build/bdist.linux-x86_64/wheel/bcbio/provenance
  copying build/lib/bcbio/provenance/data.py -> build/bdist.linux-x86_64/wheel/bcbio/provenance
  copying build/lib/bcbio/provenance/programs.py -> build/bdist.linux-x86_64/wheel/bcbio/provenance
  creating build/bdist.linux-x86_64/wheel/bcbio/structural
  copying build/lib/bcbio/structural/shared.py -> build/bdist.linux-x86_64/wheel/bcbio/structural
  copying build/lib/bcbio/structural/wham.py -> build/bdist.linux-x86_64/wheel/bcbio/structural
  copying build/lib/bcbio/structural/validate.py -> build/bdist.linux-x86_64/wheel/bcbio/structural
  copying build/lib/bcbio/structural/purple.py -> build/bdist.linux-x86_64/wheel/bcbio/structural
  copying build/lib/bcbio/structural/battenberg.py -> build/bdist.linux-x86_64/wheel/bcbio/structural
  copying build/lib/bcbio/structural/convert.py -> build/bdist.linux-x86_64/wheel/bcbio/structural
  copying build/lib/bcbio/structural/metasv.py -> build/bdist.linux-x86_64/wheel/bcbio/structural
  copying build/lib/bcbio/structural/cnvkit.py -> build/bdist.linux-x86_64/wheel/bcbio/structural
  copying build/lib/bcbio/structural/titancna.py -> build/bdist.linux-x86_64/wheel/bcbio/structural
  copying build/lib/bcbio/structural/plot.py -> build/bdist.linux-x86_64/wheel/bcbio/structural
  copying build/lib/bcbio/structural/lumpy.py -> build/bdist.linux-x86_64/wheel/bcbio/structural
  copying build/lib/bcbio/structural/gridss.py -> build/bdist.linux-x86_64/wheel/bcbio/structural
  copying build/lib/bcbio/structural/purecn.py -> build/bdist.linux-x86_64/wheel/bcbio/structural
  copying build/lib/bcbio/structural/hydra.py -> build/bdist.linux-x86_64/wheel/bcbio/structural
  copying build/lib/bcbio/structural/pindel.py -> build/bdist.linux-x86_64/wheel/bcbio/structural
  copying build/lib/bcbio/structural/annotate.py -> build/bdist.linux-x86_64/wheel/bcbio/structural
  copying build/lib/bcbio/structural/cn_mops.py -> build/bdist.linux-x86_64/wheel/bcbio/structural
  copying build/lib/bcbio/structural/__init__.py -> build/bdist.linux-x86_64/wheel/bcbio/structural
  copying build/lib/bcbio/structural/seq2c.py -> build/bdist.linux-x86_64/wheel/bcbio/structural
  copying build/lib/bcbio/structural/delly.py -> build/bdist.linux-x86_64/wheel/bcbio/structural
  copying build/lib/bcbio/structural/prioritize.py -> build/bdist.linux-x86_64/wheel/bcbio/structural
  copying build/lib/bcbio/structural/manta.py -> build/bdist.linux-x86_64/wheel/bcbio/structural
  copying build/lib/bcbio/structural/gatkcnv.py -> build/bdist.linux-x86_64/wheel/bcbio/structural
  copying build/lib/bcbio/structural/regions.py -> build/bdist.linux-x86_64/wheel/bcbio/structural
  creating build/bdist.linux-x86_64/wheel/bcbio/variation
  copying build/lib/bcbio/variation/effects.py -> build/bdist.linux-x86_64/wheel/bcbio/variation
  copying build/lib/bcbio/variation/qsnp.py -> build/bdist.linux-x86_64/wheel/bcbio/variation
  copying build/lib/bcbio/variation/varscan.py -> build/bdist.linux-x86_64/wheel/bcbio/variation
  copying build/lib/bcbio/variation/multi.py -> build/bdist.linux-x86_64/wheel/bcbio/variation
  copying build/lib/bcbio/variation/damage.py -> build/bdist.linux-x86_64/wheel/bcbio/variation
  copying build/lib/bcbio/variation/freebayes.py -> build/bdist.linux-x86_64/wheel/bcbio/variation
  copying build/lib/bcbio/variation/sentieon.py -> build/bdist.linux-x86_64/wheel/bcbio/variation
  copying build/lib/bcbio/variation/split.py -> build/bdist.linux-x86_64/wheel/bcbio/variation
  copying build/lib/bcbio/variation/mutect.py -> build/bdist.linux-x86_64/wheel/bcbio/variation
  copying build/lib/bcbio/variation/pisces.py -> build/bdist.linux-x86_64/wheel/bcbio/variation
  copying build/lib/bcbio/variation/vardict.py -> build/bdist.linux-x86_64/wheel/bcbio/variation
  copying build/lib/bcbio/variation/validate.py -> build/bdist.linux-x86_64/wheel/bcbio/variation
  copying build/lib/bcbio/variation/gatkjoint.py -> build/bdist.linux-x86_64/wheel/bcbio/variation
  copying build/lib/bcbio/variation/ensemble.py -> build/bdist.linux-x86_64/wheel/bcbio/variation
  copying build/lib/bcbio/variation/bamprep.py -> build/bdist.linux-x86_64/wheel/bcbio/variation
  copying build/lib/bcbio/variation/gatk.py -> build/bdist.linux-x86_64/wheel/bcbio/variation
  copying build/lib/bcbio/variation/coverage.py -> build/bdist.linux-x86_64/wheel/bcbio/variation
  copying build/lib/bcbio/variation/joint.py -> build/bdist.linux-x86_64/wheel/bcbio/variation
  copying build/lib/bcbio/variation/samtools.py -> build/bdist.linux-x86_64/wheel/bcbio/variation
  copying build/lib/bcbio/variation/smcounter2.py -> build/bdist.linux-x86_64/wheel/bcbio/variation
  copying build/lib/bcbio/variation/recalibrate.py -> build/bdist.linux-x86_64/wheel/bcbio/variation
  copying build/lib/bcbio/variation/vcfutils.py -> build/bdist.linux-x86_64/wheel/bcbio/variation
  copying build/lib/bcbio/variation/bedutils.py -> build/bdist.linux-x86_64/wheel/bcbio/variation
  copying build/lib/bcbio/variation/naming.py -> build/bdist.linux-x86_64/wheel/bcbio/variation
  copying build/lib/bcbio/variation/cortex.py -> build/bdist.linux-x86_64/wheel/bcbio/variation
  copying build/lib/bcbio/variation/ploidy.py -> build/bdist.linux-x86_64/wheel/bcbio/variation
  copying build/lib/bcbio/variation/realign.py -> build/bdist.linux-x86_64/wheel/bcbio/variation
  copying build/lib/bcbio/variation/octopus.py -> build/bdist.linux-x86_64/wheel/bcbio/variation
  copying build/lib/bcbio/variation/vfilter.py -> build/bdist.linux-x86_64/wheel/bcbio/variation
  copying build/lib/bcbio/variation/mutect2.py -> build/bdist.linux-x86_64/wheel/bcbio/variation
  copying build/lib/bcbio/variation/scalpel.py -> build/bdist.linux-x86_64/wheel/bcbio/variation
  copying build/lib/bcbio/variation/germline.py -> build/bdist.linux-x86_64/wheel/bcbio/variation
  copying build/lib/bcbio/variation/annotation.py -> build/bdist.linux-x86_64/wheel/bcbio/variation
  copying build/lib/bcbio/variation/strelka2.py -> build/bdist.linux-x86_64/wheel/bcbio/variation
  copying build/lib/bcbio/variation/population.py -> build/bdist.linux-x86_64/wheel/bcbio/variation
  copying build/lib/bcbio/variation/gatkfilter.py -> build/bdist.linux-x86_64/wheel/bcbio/variation
  copying build/lib/bcbio/variation/platypus.py -> build/bdist.linux-x86_64/wheel/bcbio/variation
  copying build/lib/bcbio/variation/peddy.py -> build/bdist.linux-x86_64/wheel/bcbio/variation
  copying build/lib/bcbio/variation/normalize.py -> build/bdist.linux-x86_64/wheel/bcbio/variation
  copying build/lib/bcbio/variation/__init__.py -> build/bdist.linux-x86_64/wheel/bcbio/variation
  copying build/lib/bcbio/variation/vcfanno.py -> build/bdist.linux-x86_64/wheel/bcbio/variation
  copying build/lib/bcbio/variation/prioritize.py -> build/bdist.linux-x86_64/wheel/bcbio/variation
  copying build/lib/bcbio/variation/genotype.py -> build/bdist.linux-x86_64/wheel/bcbio/variation
  copying build/lib/bcbio/variation/deepvariant.py -> build/bdist.linux-x86_64/wheel/bcbio/variation
  copying build/lib/bcbio/variation/validateplot.py -> build/bdist.linux-x86_64/wheel/bcbio/variation
  creating build/bdist.linux-x86_64/wheel/bcbio/pipeline
  creating build/bdist.linux-x86_64/wheel/bcbio/pipeline/disambiguate
  copying build/lib/bcbio/pipeline/disambiguate/run.py -> build/bdist.linux-x86_64/wheel/bcbio/pipeline/disambiguate
  copying build/lib/bcbio/pipeline/disambiguate/__init__.py -> build/bdist.linux-x86_64/wheel/bcbio/pipeline/disambiguate
  copying build/lib/bcbio/pipeline/datadict.py -> build/bdist.linux-x86_64/wheel/bcbio/pipeline
  copying build/lib/bcbio/pipeline/shared.py -> build/bdist.linux-x86_64/wheel/bcbio/pipeline
  copying build/lib/bcbio/pipeline/version.py -> build/bdist.linux-x86_64/wheel/bcbio/pipeline
  copying build/lib/bcbio/pipeline/rnaseq.py -> build/bdist.linux-x86_64/wheel/bcbio/pipeline
  copying build/lib/bcbio/pipeline/merge.py -> build/bdist.linux-x86_64/wheel/bcbio/pipeline
  copying build/lib/bcbio/pipeline/sra.py -> build/bdist.linux-x86_64/wheel/bcbio/pipeline
  copying build/lib/bcbio/pipeline/region.py -> build/bdist.linux-x86_64/wheel/bcbio/pipeline
  copying build/lib/bcbio/pipeline/alignment.py -> build/bdist.linux-x86_64/wheel/bcbio/pipeline
  copying build/lib/bcbio/pipeline/sample.py -> build/bdist.linux-x86_64/wheel/bcbio/pipeline
  copying build/lib/bcbio/pipeline/cleanbam.py -> build/bdist.linux-x86_64/wheel/bcbio/pipeline
  copying build/lib/bcbio/pipeline/archive.py -> build/bdist.linux-x86_64/wheel/bcbio/pipeline
  copying build/lib/bcbio/pipeline/fastq.py -> build/bdist.linux-x86_64/wheel/bcbio/pipeline
  copying build/lib/bcbio/pipeline/config_utils.py -> build/bdist.linux-x86_64/wheel/bcbio/pipeline
  copying build/lib/bcbio/pipeline/tools.py -> build/bdist.linux-x86_64/wheel/bcbio/pipeline
  copying build/lib/bcbio/pipeline/__init__.py -> build/bdist.linux-x86_64/wheel/bcbio/pipeline
  copying build/lib/bcbio/pipeline/genome.py -> build/bdist.linux-x86_64/wheel/bcbio/pipeline
  copying build/lib/bcbio/pipeline/main.py -> build/bdist.linux-x86_64/wheel/bcbio/pipeline
  copying build/lib/bcbio/pipeline/qcsummary.py -> build/bdist.linux-x86_64/wheel/bcbio/pipeline
  copying build/lib/bcbio/pipeline/run_info.py -> build/bdist.linux-x86_64/wheel/bcbio/pipeline
  copying build/lib/bcbio/pipeline/variation.py -> build/bdist.linux-x86_64/wheel/bcbio/pipeline
  creating build/bdist.linux-x86_64/wheel/bcbio/rnaseq
  copying build/lib/bcbio/rnaseq/sailfish.py -> build/bdist.linux-x86_64/wheel/bcbio/rnaseq
  copying build/lib/bcbio/rnaseq/gtf.py -> build/bdist.linux-x86_64/wheel/bcbio/rnaseq
  copying build/lib/bcbio/rnaseq/stringtie.py -> build/bdist.linux-x86_64/wheel/bcbio/rnaseq
  copying build/lib/bcbio/rnaseq/rapmap.py -> build/bdist.linux-x86_64/wheel/bcbio/rnaseq
  copying build/lib/bcbio/rnaseq/featureCounts.py -> build/bdist.linux-x86_64/wheel/bcbio/rnaseq
  copying build/lib/bcbio/rnaseq/kallisto.py -> build/bdist.linux-x86_64/wheel/bcbio/rnaseq
  copying build/lib/bcbio/rnaseq/rsem.py -> build/bdist.linux-x86_64/wheel/bcbio/rnaseq
  copying build/lib/bcbio/rnaseq/singlecellexperiment.py -> build/bdist.linux-x86_64/wheel/bcbio/rnaseq
  copying build/lib/bcbio/rnaseq/annotate_gtf.py -> build/bdist.linux-x86_64/wheel/bcbio/rnaseq
  copying build/lib/bcbio/rnaseq/umi.py -> build/bdist.linux-x86_64/wheel/bcbio/rnaseq
  copying build/lib/bcbio/rnaseq/count.py -> build/bdist.linux-x86_64/wheel/bcbio/rnaseq
  copying build/lib/bcbio/rnaseq/express.py -> build/bdist.linux-x86_64/wheel/bcbio/rnaseq
  copying build/lib/bcbio/rnaseq/bcbiornaseq.py -> build/bdist.linux-x86_64/wheel/bcbio/rnaseq
  copying build/lib/bcbio/rnaseq/cpat.py -> build/bdist.linux-x86_64/wheel/bcbio/rnaseq
  copying build/lib/bcbio/rnaseq/oncofuse.py -> build/bdist.linux-x86_64/wheel/bcbio/rnaseq
  copying build/lib/bcbio/rnaseq/spikein.py -> build/bdist.linux-x86_64/wheel/bcbio/rnaseq
  copying build/lib/bcbio/rnaseq/__init__.py -> build/bdist.linux-x86_64/wheel/bcbio/rnaseq
  copying build/lib/bcbio/rnaseq/salmon.py -> build/bdist.linux-x86_64/wheel/bcbio/rnaseq
  copying build/lib/bcbio/rnaseq/ericscript.py -> build/bdist.linux-x86_64/wheel/bcbio/rnaseq
  copying build/lib/bcbio/rnaseq/cufflinks.py -> build/bdist.linux-x86_64/wheel/bcbio/rnaseq
  copying build/lib/bcbio/rnaseq/dexseq.py -> build/bdist.linux-x86_64/wheel/bcbio/rnaseq
  copying build/lib/bcbio/rnaseq/pizzly.py -> build/bdist.linux-x86_64/wheel/bcbio/rnaseq
  copying build/lib/bcbio/rnaseq/qc.py -> build/bdist.linux-x86_64/wheel/bcbio/rnaseq
  copying build/lib/bcbio/rnaseq/variation.py -> build/bdist.linux-x86_64/wheel/bcbio/rnaseq
  creating build/bdist.linux-x86_64/wheel/bcbio/broad
  copying build/lib/bcbio/broad/metrics.py -> build/bdist.linux-x86_64/wheel/bcbio/broad
  copying build/lib/bcbio/broad/picardrun.py -> build/bdist.linux-x86_64/wheel/bcbio/broad
  copying build/lib/bcbio/broad/__init__.py -> build/bdist.linux-x86_64/wheel/bcbio/broad
  creating build/bdist.linux-x86_64/wheel/bcbio/cwl
  copying build/lib/bcbio/cwl/cwlutils.py -> build/bdist.linux-x86_64/wheel/bcbio/cwl
  copying build/lib/bcbio/cwl/workflow.py -> build/bdist.linux-x86_64/wheel/bcbio/cwl
  copying build/lib/bcbio/cwl/defs.py -> build/bdist.linux-x86_64/wheel/bcbio/cwl
  copying build/lib/bcbio/cwl/inspect.py -> build/bdist.linux-x86_64/wheel/bcbio/cwl
  copying build/lib/bcbio/cwl/tool.py -> build/bdist.linux-x86_64/wheel/bcbio/cwl
  copying build/lib/bcbio/cwl/create.py -> build/bdist.linux-x86_64/wheel/bcbio/cwl
  copying build/lib/bcbio/cwl/__init__.py -> build/bdist.linux-x86_64/wheel/bcbio/cwl
  copying build/lib/bcbio/cwl/hpc.py -> build/bdist.linux-x86_64/wheel/bcbio/cwl
  copying build/lib/bcbio/cwl/main.py -> build/bdist.linux-x86_64/wheel/bcbio/cwl
  creating build/bdist.linux-x86_64/wheel/bcbio/heterogeneity
  copying build/lib/bcbio/heterogeneity/loh.py -> build/bdist.linux-x86_64/wheel/bcbio/heterogeneity
  copying build/lib/bcbio/heterogeneity/chromhacks.py -> build/bdist.linux-x86_64/wheel/bcbio/heterogeneity
  copying build/lib/bcbio/heterogeneity/phylowgs.py -> build/bdist.linux-x86_64/wheel/bcbio/heterogeneity
  copying build/lib/bcbio/heterogeneity/bubbletree.py -> build/bdist.linux-x86_64/wheel/bcbio/heterogeneity
  copying build/lib/bcbio/heterogeneity/theta.py -> build/bdist.linux-x86_64/wheel/bcbio/heterogeneity
  copying build/lib/bcbio/heterogeneity/__init__.py -> build/bdist.linux-x86_64/wheel/bcbio/heterogeneity
  creating build/bdist.linux-x86_64/wheel/bcbio/chipseq
  copying build/lib/bcbio/chipseq/macs2.py -> build/bdist.linux-x86_64/wheel/bcbio/chipseq
  copying build/lib/bcbio/chipseq/peaks.py -> build/bdist.linux-x86_64/wheel/bcbio/chipseq
  copying build/lib/bcbio/chipseq/__init__.py -> build/bdist.linux-x86_64/wheel/bcbio/chipseq
  creating build/bdist.linux-x86_64/wheel/bcbio/illumina
  copying build/lib/bcbio/illumina/samplesheet.py -> build/bdist.linux-x86_64/wheel/bcbio/illumina
  copying build/lib/bcbio/illumina/demultiplex.py -> build/bdist.linux-x86_64/wheel/bcbio/illumina
  copying build/lib/bcbio/illumina/flowcell.py -> build/bdist.linux-x86_64/wheel/bcbio/illumina
  copying build/lib/bcbio/illumina/__init__.py -> build/bdist.linux-x86_64/wheel/bcbio/illumina
  copying build/lib/bcbio/illumina/transfer.py -> build/bdist.linux-x86_64/wheel/bcbio/illumina
  copying build/lib/bcbio/illumina/machine.py -> build/bdist.linux-x86_64/wheel/bcbio/illumina
  creating build/bdist.linux-x86_64/wheel/bcbio/server
  copying build/lib/bcbio/server/run.py -> build/bdist.linux-x86_64/wheel/bcbio/server
  copying build/lib/bcbio/server/background.py -> build/bdist.linux-x86_64/wheel/bcbio/server
  copying build/lib/bcbio/server/__init__.py -> build/bdist.linux-x86_64/wheel/bcbio/server
  copying build/lib/bcbio/server/main.py -> build/bdist.linux-x86_64/wheel/bcbio/server
  creating build/bdist.linux-x86_64/wheel/bcbio/galaxy
  copying build/lib/bcbio/galaxy/api.py -> build/bdist.linux-x86_64/wheel/bcbio/galaxy
  copying build/lib/bcbio/galaxy/loc.py -> build/bdist.linux-x86_64/wheel/bcbio/galaxy
  copying build/lib/bcbio/galaxy/__init__.py -> build/bdist.linux-x86_64/wheel/bcbio/galaxy
  copying build/lib/bcbio/galaxy/nglims.py -> build/bdist.linux-x86_64/wheel/bcbio/galaxy
  creating build/bdist.linux-x86_64/wheel/bcbio/bam
  copying build/lib/bcbio/bam/fasta.py -> build/bdist.linux-x86_64/wheel/bcbio/bam
  copying build/lib/bcbio/bam/skewer.py -> build/bdist.linux-x86_64/wheel/bcbio/bam
  copying build/lib/bcbio/bam/coverage.py -> build/bdist.linux-x86_64/wheel/bcbio/bam
  copying build/lib/bcbio/bam/counts.py -> build/bdist.linux-x86_64/wheel/bcbio/bam
  copying build/lib/bcbio/bam/ref.py -> build/bdist.linux-x86_64/wheel/bcbio/bam
  copying build/lib/bcbio/bam/callable.py -> build/bdist.linux-x86_64/wheel/bcbio/bam
  copying build/lib/bcbio/bam/fastq.py -> build/bdist.linux-x86_64/wheel/bcbio/bam
  copying build/lib/bcbio/bam/trim.py -> build/bdist.linux-x86_64/wheel/bcbio/bam
  copying build/lib/bcbio/bam/__init__.py -> build/bdist.linux-x86_64/wheel/bcbio/bam
  copying build/lib/bcbio/bam/readstats.py -> build/bdist.linux-x86_64/wheel/bcbio/bam
  copying build/lib/bcbio/bam/cram.py -> build/bdist.linux-x86_64/wheel/bcbio/bam
  creating build/bdist.linux-x86_64/wheel/bcbio/picard
  copying build/lib/bcbio/picard/utils.py -> build/bdist.linux-x86_64/wheel/bcbio/picard
  copying build/lib/bcbio/picard/metrics.py -> build/bdist.linux-x86_64/wheel/bcbio/picard
  copying build/lib/bcbio/picard/__init__.py -> build/bdist.linux-x86_64/wheel/bcbio/picard
  creating build/bdist.linux-x86_64/wheel/bcbio/graph
  copying build/lib/bcbio/graph/collectl.py -> build/bdist.linux-x86_64/wheel/bcbio/graph
  copying build/lib/bcbio/graph/graph.py -> build/bdist.linux-x86_64/wheel/bcbio/graph
  copying build/lib/bcbio/graph/__init__.py -> build/bdist.linux-x86_64/wheel/bcbio/graph
  creating build/bdist.linux-x86_64/wheel/bcbio/srna
  copying build/lib/bcbio/srna/mirdeep.py -> build/bdist.linux-x86_64/wheel/bcbio/srna
  copying build/lib/bcbio/srna/umis.py -> build/bdist.linux-x86_64/wheel/bcbio/srna
  copying build/lib/bcbio/srna/sample.py -> build/bdist.linux-x86_64/wheel/bcbio/srna
  copying build/lib/bcbio/srna/__init__.py -> build/bdist.linux-x86_64/wheel/bcbio/srna
  copying build/lib/bcbio/srna/mirge.py -> build/bdist.linux-x86_64/wheel/bcbio/srna
  copying build/lib/bcbio/srna/group.py -> build/bdist.linux-x86_64/wheel/bcbio/srna
  copying build/lib/bcbio/srna/qc.py -> build/bdist.linux-x86_64/wheel/bcbio/srna
  creating build/bdist.linux-x86_64/wheel/bcbio/bed
  copying build/lib/bcbio/bed/__init__.py -> build/bdist.linux-x86_64/wheel/bcbio/bed
  creating build/bdist.linux-x86_64/wheel/bcbio/log
  copying build/lib/bcbio/log/logbook_zmqpush.py -> build/bdist.linux-x86_64/wheel/bcbio/log
  copying build/lib/bcbio/log/__init__.py -> build/bdist.linux-x86_64/wheel/bcbio/log
  creating build/bdist.linux-x86_64/wheel/bcbio/hmmer
  copying build/lib/bcbio/hmmer/__init__.py -> build/bdist.linux-x86_64/wheel/bcbio/hmmer
  copying build/lib/bcbio/hmmer/search.py -> build/bdist.linux-x86_64/wheel/bcbio/hmmer
  copying build/lib/bcbio/utils.py -> build/bdist.linux-x86_64/wheel/bcbio
  copying build/lib/bcbio/setpath.py -> build/bdist.linux-x86_64/wheel/bcbio
  copying build/lib/bcbio/__init__.py -> build/bdist.linux-x86_64/wheel/bcbio
  copying build/lib/bcbio/install.py -> build/bdist.linux-x86_64/wheel/bcbio
  running install_egg_info
  Copying bcbio_nextgen.egg-info to build/bdist.linux-x86_64/wheel/bcbio_nextgen-1.1.5-py3.9.egg-info
  running install_scripts
  creating build/bdist.linux-x86_64/wheel/bcbio_nextgen-1.1.5.data
  creating build/bdist.linux-x86_64/wheel/bcbio_nextgen-1.1.5.data/scripts
  copying build/scripts-3.9/cwltool2wdl.py -> build/bdist.linux-x86_64/wheel/bcbio_nextgen-1.1.5.data/scripts
  copying build/scripts-3.9/bcbio_fastq_umi_prep.py -> build/bdist.linux-x86_64/wheel/bcbio_nextgen-1.1.5.data/scripts
  copying build/scripts-3.9/bcbio_prepare_samples.py -> build/bdist.linux-x86_64/wheel/bcbio_nextgen-1.1.5.data/scripts
  copying build/scripts-3.9/bcbio_setup_genome.py -> build/bdist.linux-x86_64/wheel/bcbio_nextgen-1.1.5.data/scripts
  copying build/scripts-3.9/bcbio_nextgen.py -> build/bdist.linux-x86_64/wheel/bcbio_nextgen-1.1.5.data/scripts
  changing mode of build/bdist.linux-x86_64/wheel/bcbio_nextgen-1.1.5.data/scripts/cwltool2wdl.py to 755
  changing mode of build/bdist.linux-x86_64/wheel/bcbio_nextgen-1.1.5.data/scripts/bcbio_fastq_umi_prep.py to 755
  changing mode of build/bdist.linux-x86_64/wheel/bcbio_nextgen-1.1.5.data/scripts/bcbio_prepare_samples.py to 755
  changing mode of build/bdist.linux-x86_64/wheel/bcbio_nextgen-1.1.5.data/scripts/bcbio_setup_genome.py to 755
  changing mode of build/bdist.linux-x86_64/wheel/bcbio_nextgen-1.1.5.data/scripts/bcbio_nextgen.py to 755
  adding license file "LICENSE.txt" (matched pattern "LICEN[CS]E*")
  creating build/bdist.linux-x86_64/wheel/bcbio_nextgen-1.1.5.dist-info/WHEEL
  creating '/builddir/build/BUILD/bcbio-nextgen-1.1.5/.pyproject-builddir/pip-wheel-lgx4xy70/tmpqxccyxy0/bcbio_nextgen-1.1.5-py3-none-any.whl' and adding 'build/bdist.linux-x86_64/wheel' to it
  adding 'bcbio/__init__.py'
  adding 'bcbio/install.py'
  adding 'bcbio/setpath.py'
  adding 'bcbio/utils.py'
  adding 'bcbio/bam/__init__.py'
  adding 'bcbio/bam/callable.py'
  adding 'bcbio/bam/counts.py'
  adding 'bcbio/bam/coverage.py'
  adding 'bcbio/bam/cram.py'
  adding 'bcbio/bam/fasta.py'
  adding 'bcbio/bam/fastq.py'
  adding 'bcbio/bam/readstats.py'
  adding 'bcbio/bam/ref.py'
  adding 'bcbio/bam/skewer.py'
  adding 'bcbio/bam/trim.py'
  adding 'bcbio/bed/__init__.py'
  adding 'bcbio/broad/__init__.py'
  adding 'bcbio/broad/metrics.py'
  adding 'bcbio/broad/picardrun.py'
  adding 'bcbio/chipseq/__init__.py'
  adding 'bcbio/chipseq/macs2.py'
  adding 'bcbio/chipseq/peaks.py'
  adding 'bcbio/cwl/__init__.py'
  adding 'bcbio/cwl/create.py'
  adding 'bcbio/cwl/cwlutils.py'
  adding 'bcbio/cwl/defs.py'
  adding 'bcbio/cwl/hpc.py'
  adding 'bcbio/cwl/inspect.py'
  adding 'bcbio/cwl/main.py'
  adding 'bcbio/cwl/tool.py'
  adding 'bcbio/cwl/workflow.py'
  adding 'bcbio/data/umis/10x_v2-cb1.txt.gz'
  adding 'bcbio/data/umis/10x_v2-transform.json'
  adding 'bcbio/data/umis/dropseq-transform.json'
  adding 'bcbio/data/umis/harvard-indrop-v2-cb1.txt.gz'
  adding 'bcbio/data/umis/harvard-indrop-v2-cb2.txt.gz'
  adding 'bcbio/data/umis/harvard-indrop-v2-transform.json'
  adding 'bcbio/data/umis/harvard-indrop-v3-cb1.txt.gz'
  adding 'bcbio/data/umis/harvard-indrop-v3-cb2.txt.gz'
  adding 'bcbio/data/umis/harvard-indrop-v3-sample_barcodes.txt.gz'
  adding 'bcbio/data/umis/harvard-indrop-v3-transform.json'
  adding 'bcbio/data/umis/harvard-scrb-cb1.txt.gz'
  adding 'bcbio/data/umis/harvard-scrb-transform.json'
  adding 'bcbio/data/umis/icell8-cb1.txt.gz'
  adding 'bcbio/data/umis/icell8-transform.json'
  adding 'bcbio/data/umis/qiagen_smallRNA_umi-transform.json'
  adding 'bcbio/data/umis/surecell-cb1.txt.gz'
  adding 'bcbio/data/umis/surecell-cb2.txt.gz'
  adding 'bcbio/data/umis/surecell-cb3.txt.gz'
  adding 'bcbio/data/umis/surecell-transform.json'
  adding 'bcbio/distributed/__init__.py'
  adding 'bcbio/distributed/clargs.py'
  adding 'bcbio/distributed/clusterk.py'
  adding 'bcbio/distributed/ipython.py'
  adding 'bcbio/distributed/ipythontasks.py'
  adding 'bcbio/distributed/multi.py'
  adding 'bcbio/distributed/multitasks.py'
  adding 'bcbio/distributed/objectstore.py'
  adding 'bcbio/distributed/prun.py'
  adding 'bcbio/distributed/resources.py'
  adding 'bcbio/distributed/runfn.py'
  adding 'bcbio/distributed/split.py'
  adding 'bcbio/distributed/transaction.py'
  adding 'bcbio/galaxy/__init__.py'
  adding 'bcbio/galaxy/api.py'
  adding 'bcbio/galaxy/loc.py'
  adding 'bcbio/galaxy/nglims.py'
  adding 'bcbio/graph/__init__.py'
  adding 'bcbio/graph/collectl.py'
  adding 'bcbio/graph/graph.py'
  adding 'bcbio/heterogeneity/__init__.py'
  adding 'bcbio/heterogeneity/bubbletree.py'
  adding 'bcbio/heterogeneity/chromhacks.py'
  adding 'bcbio/heterogeneity/loh.py'
  adding 'bcbio/heterogeneity/phylowgs.py'
  adding 'bcbio/heterogeneity/theta.py'
  adding 'bcbio/hla/__init__.py'
  adding 'bcbio/hla/bwakit.py'
  adding 'bcbio/hla/groups.py'
  adding 'bcbio/hla/optitype.py'
  adding 'bcbio/hmmer/__init__.py'
  adding 'bcbio/hmmer/search.py'
  adding 'bcbio/illumina/__init__.py'
  adding 'bcbio/illumina/demultiplex.py'
  adding 'bcbio/illumina/flowcell.py'
  adding 'bcbio/illumina/machine.py'
  adding 'bcbio/illumina/samplesheet.py'
  adding 'bcbio/illumina/transfer.py'
  adding 'bcbio/log/__init__.py'
  adding 'bcbio/log/logbook_zmqpush.py'
  adding 'bcbio/ngsalign/__init__.py'
  adding 'bcbio/ngsalign/alignprep.py'
  adding 'bcbio/ngsalign/bbmap.py'
  adding 'bcbio/ngsalign/bowtie.py'
  adding 'bcbio/ngsalign/bowtie2.py'
  adding 'bcbio/ngsalign/bwa.py'
  adding 'bcbio/ngsalign/hisat2.py'
  adding 'bcbio/ngsalign/minimap2.py'
  adding 'bcbio/ngsalign/mosaik.py'
  adding 'bcbio/ngsalign/novoalign.py'
  adding 'bcbio/ngsalign/postalign.py'
  adding 'bcbio/ngsalign/rtg.py'
  adding 'bcbio/ngsalign/snap.py'
  adding 'bcbio/ngsalign/star.py'
  adding 'bcbio/ngsalign/tophat.py'
  adding 'bcbio/picard/__init__.py'
  adding 'bcbio/picard/metrics.py'
  adding 'bcbio/picard/utils.py'
  adding 'bcbio/pipeline/__init__.py'
  adding 'bcbio/pipeline/alignment.py'
  adding 'bcbio/pipeline/archive.py'
  adding 'bcbio/pipeline/cleanbam.py'
  adding 'bcbio/pipeline/config_utils.py'
  adding 'bcbio/pipeline/datadict.py'
  adding 'bcbio/pipeline/fastq.py'
  adding 'bcbio/pipeline/genome.py'
  adding 'bcbio/pipeline/main.py'
  adding 'bcbio/pipeline/merge.py'
  adding 'bcbio/pipeline/qcsummary.py'
  adding 'bcbio/pipeline/region.py'
  adding 'bcbio/pipeline/rnaseq.py'
  adding 'bcbio/pipeline/run_info.py'
  adding 'bcbio/pipeline/sample.py'
  adding 'bcbio/pipeline/shared.py'
  adding 'bcbio/pipeline/sra.py'
  adding 'bcbio/pipeline/tools.py'
  adding 'bcbio/pipeline/variation.py'
  adding 'bcbio/pipeline/version.py'
  adding 'bcbio/pipeline/disambiguate/__init__.py'
  adding 'bcbio/pipeline/disambiguate/run.py'
  adding 'bcbio/provenance/__init__.py'
  adding 'bcbio/provenance/data.py'
  adding 'bcbio/provenance/diagnostics.py'
  adding 'bcbio/provenance/do.py'
  adding 'bcbio/provenance/profile.py'
  adding 'bcbio/provenance/programs.py'
  adding 'bcbio/provenance/system.py'
  adding 'bcbio/provenance/versioncheck.py'
  adding 'bcbio/qc/__init__.py'
  adding 'bcbio/qc/atropos.py'
  adding 'bcbio/qc/chipseq.py'
  adding 'bcbio/qc/contamination.py'
  adding 'bcbio/qc/coverage.py'
  adding 'bcbio/qc/damage.py'
  adding 'bcbio/qc/fastqc.py'
  adding 'bcbio/qc/kraken.py'
  adding 'bcbio/qc/multiqc.py'
  adding 'bcbio/qc/picard.py'
  adding 'bcbio/qc/preseq.py'
  adding 'bcbio/qc/qsignature.py'
  adding 'bcbio/qc/qualimap.py'
  adding 'bcbio/qc/samtools.py'
  adding 'bcbio/qc/srna.py'
  adding 'bcbio/qc/umi.py'
  adding 'bcbio/qc/variant.py'
  adding 'bcbio/qc/viral.py'
  adding 'bcbio/rnaseq/__init__.py'
  adding 'bcbio/rnaseq/annotate_gtf.py'
  adding 'bcbio/rnaseq/bcbiornaseq.py'
  adding 'bcbio/rnaseq/count.py'
  adding 'bcbio/rnaseq/cpat.py'
  adding 'bcbio/rnaseq/cufflinks.py'
  adding 'bcbio/rnaseq/dexseq.py'
  adding 'bcbio/rnaseq/ericscript.py'
  adding 'bcbio/rnaseq/express.py'
  adding 'bcbio/rnaseq/featureCounts.py'
  adding 'bcbio/rnaseq/gtf.py'
  adding 'bcbio/rnaseq/kallisto.py'
  adding 'bcbio/rnaseq/oncofuse.py'
  adding 'bcbio/rnaseq/pizzly.py'
  adding 'bcbio/rnaseq/qc.py'
  adding 'bcbio/rnaseq/rapmap.py'
  adding 'bcbio/rnaseq/rsem.py'
  adding 'bcbio/rnaseq/sailfish.py'
  adding 'bcbio/rnaseq/salmon.py'
  adding 'bcbio/rnaseq/singlecellexperiment.py'
  adding 'bcbio/rnaseq/spikein.py'
  adding 'bcbio/rnaseq/stringtie.py'
  adding 'bcbio/rnaseq/umi.py'
  adding 'bcbio/rnaseq/variation.py'
  adding 'bcbio/server/__init__.py'
  adding 'bcbio/server/background.py'
  adding 'bcbio/server/main.py'
  adding 'bcbio/server/run.py'
  adding 'bcbio/srna/__init__.py'
  adding 'bcbio/srna/group.py'
  adding 'bcbio/srna/mirdeep.py'
  adding 'bcbio/srna/mirge.py'
  adding 'bcbio/srna/qc.py'
  adding 'bcbio/srna/sample.py'
  adding 'bcbio/srna/umis.py'
  adding 'bcbio/structural/__init__.py'
  adding 'bcbio/structural/annotate.py'
  adding 'bcbio/structural/battenberg.py'
  adding 'bcbio/structural/cn_mops.py'
  adding 'bcbio/structural/cnvkit.py'
  adding 'bcbio/structural/convert.py'
  adding 'bcbio/structural/delly.py'
  adding 'bcbio/structural/gatkcnv.py'
  adding 'bcbio/structural/gridss.py'
  adding 'bcbio/structural/hydra.py'
  adding 'bcbio/structural/lumpy.py'
  adding 'bcbio/structural/manta.py'
  adding 'bcbio/structural/metasv.py'
  adding 'bcbio/structural/pindel.py'
  adding 'bcbio/structural/plot.py'
  adding 'bcbio/structural/prioritize.py'
  adding 'bcbio/structural/purecn.py'
  adding 'bcbio/structural/purple.py'
  adding 'bcbio/structural/regions.py'
  adding 'bcbio/structural/seq2c.py'
  adding 'bcbio/structural/shared.py'
  adding 'bcbio/structural/titancna.py'
  adding 'bcbio/structural/validate.py'
  adding 'bcbio/structural/wham.py'
  adding 'bcbio/upload/__init__.py'
  adding 'bcbio/upload/filesystem.py'
  adding 'bcbio/upload/galaxy.py'
  adding 'bcbio/upload/irods.py'
  adding 'bcbio/upload/s3.py'
  adding 'bcbio/upload/shared.py'
  adding 'bcbio/variation/__init__.py'
  adding 'bcbio/variation/annotation.py'
  adding 'bcbio/variation/bamprep.py'
  adding 'bcbio/variation/bedutils.py'
  adding 'bcbio/variation/cortex.py'
  adding 'bcbio/variation/coverage.py'
  adding 'bcbio/variation/damage.py'
  adding 'bcbio/variation/deepvariant.py'
  adding 'bcbio/variation/effects.py'
  adding 'bcbio/variation/ensemble.py'
  adding 'bcbio/variation/freebayes.py'
  adding 'bcbio/variation/gatk.py'
  adding 'bcbio/variation/gatkfilter.py'
  adding 'bcbio/variation/gatkjoint.py'
  adding 'bcbio/variation/genotype.py'
  adding 'bcbio/variation/germline.py'
  adding 'bcbio/variation/joint.py'
  adding 'bcbio/variation/multi.py'
  adding 'bcbio/variation/mutect.py'
  adding 'bcbio/variation/mutect2.py'
  adding 'bcbio/variation/naming.py'
  adding 'bcbio/variation/normalize.py'
  adding 'bcbio/variation/octopus.py'
  adding 'bcbio/variation/peddy.py'
  adding 'bcbio/variation/pisces.py'
  adding 'bcbio/variation/platypus.py'
  adding 'bcbio/variation/ploidy.py'
  adding 'bcbio/variation/population.py'
  adding 'bcbio/variation/prioritize.py'
  adding 'bcbio/variation/qsnp.py'
  adding 'bcbio/variation/realign.py'
  adding 'bcbio/variation/recalibrate.py'
  adding 'bcbio/variation/samtools.py'
  adding 'bcbio/variation/scalpel.py'
  adding 'bcbio/variation/sentieon.py'
  adding 'bcbio/variation/smcounter2.py'
  adding 'bcbio/variation/split.py'
  adding 'bcbio/variation/strelka2.py'
  adding 'bcbio/variation/validate.py'
  adding 'bcbio/variation/validateplot.py'
  adding 'bcbio/variation/vardict.py'
  adding 'bcbio/variation/varscan.py'
  adding 'bcbio/variation/vcfanno.py'
  adding 'bcbio/variation/vcfutils.py'
  adding 'bcbio/variation/vfilter.py'
  adding 'bcbio/workflow/__init__.py'
  adding 'bcbio/workflow/stormseq.py'
  adding 'bcbio/workflow/template.py'
  adding 'bcbio/workflow/xprize.py'
  adding 'bcbio_nextgen-1.1.5.data/scripts/bcbio_fastq_umi_prep.py'
  adding 'bcbio_nextgen-1.1.5.data/scripts/bcbio_nextgen.py'
  adding 'bcbio_nextgen-1.1.5.data/scripts/bcbio_prepare_samples.py'
  adding 'bcbio_nextgen-1.1.5.data/scripts/bcbio_setup_genome.py'
  adding 'bcbio_nextgen-1.1.5.data/scripts/cwltool2wdl.py'
  adding 'tests/integration/__init__.py'
  adding 'tests/integration/test_S3_pipelines.py'
  adding 'tests/integration/test_SequencingDump.py'
  adding 'tests/integration/test_automated_analysis.py'
  adding 'tests/integration/test_pipeline.py'
  adding 'tests/integration/rnaseq/__init__.py'
  adding 'tests/integration/rnaseq/test_ericscript.py'
  adding 'tests/unit/__init__.py'
  adding 'tests/unit/conftest.py'
  adding 'tests/unit/data.py'
  adding 'tests/unit/test_alignprep.py'
  adding 'tests/unit/distributed/__init__.py'
  adding 'tests/unit/distributed/test_transaction.py'
  adding 'tests/unit/ngsalign/__init__.py'
  adding 'tests/unit/pipeline/__init__.py'
  adding 'tests/unit/pipeline/test_datadict.py'
  adding 'tests/unit/pipeline/test_rnaseq.py'
  adding 'tests/unit/rnaseq/__init__.py'
  adding 'tests/unit/rnaseq/test_ericscript.py'
  adding 'tests/unit/upload/__init__.py'
  adding 'tests/unit/upload/test_upload.py'
  adding 'bcbio_nextgen-1.1.5.dist-info/LICENSE.txt'
  adding 'bcbio_nextgen-1.1.5.dist-info/METADATA'
  adding 'bcbio_nextgen-1.1.5.dist-info/WHEEL'
  adding 'bcbio_nextgen-1.1.5.dist-info/top_level.txt'
  adding 'bcbio_nextgen-1.1.5.dist-info/RECORD'
  removing build/bdist.linux-x86_64/wheel
  Building wheel for bcbio-nextgen (pyproject.toml): finished with status 'done'
  Created wheel for bcbio-nextgen: filename=bcbio_nextgen-1.1.5-py3-none-any.whl size=2469032 sha256=7058e45b324597e6fc00ba98fad07268d423185dd3fd54b749bc231a0884ce90
  Stored in directory: /builddir/.cache/pip/wheels/a7/b7/7a/2b6cc9929fae2fb3a6282d5b89d71085b040b2e24dc200cf00
Successfully built bcbio-nextgen
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.5d5yWF
+ umask 022
+ cd /builddir/build/BUILD
+ '[' /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.el9.x86_64 '!=' / ']'
+ rm -rf /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.el9.x86_64
++ dirname /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.el9.x86_64
+ mkdir -p /builddir/build/BUILDROOT
+ mkdir /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.el9.x86_64
+ cd bcbio-nextgen-1.1.5
++ ls /builddir/build/BUILD/bcbio-nextgen-1.1.5/pyproject-wheeldir/bcbio_nextgen-1.1.5-py3-none-any.whl
++ sed -E 's/([^-]+)-([^-]+)-.+\.whl/\1==\2/'
++ xargs basename --multiple
+ specifier=bcbio_nextgen==1.1.5
+ TMPDIR=/builddir/build/BUILD/bcbio-nextgen-1.1.5/.pyproject-builddir
+ /usr/bin/python3 -m pip install --root /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.el9.x86_64 --no-deps --disable-pip-version-check --progress-bar off --verbose --ignore-installed --no-warn-script-location --no-index --no-cache-dir --find-links /builddir/build/BUILD/bcbio-nextgen-1.1.5/pyproject-wheeldir bcbio_nextgen==1.1.5
Using pip 22.0.4 from /usr/lib/python3.9/site-packages/pip (python 3.9)
Looking in links: /builddir/build/BUILD/bcbio-nextgen-1.1.5/pyproject-wheeldir
Processing ./pyproject-wheeldir/bcbio_nextgen-1.1.5-py3-none-any.whl
Installing collected packages: bcbio_nextgen
Successfully installed bcbio_nextgen-1.1.5
+ '[' -d /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.el9.x86_64/usr/bin ']'
+ '[' -f /usr/bin/pathfix3.9.py ']'
+ pathfix=/usr/bin/pathfix3.9.py
+ '[' -z s ']'
+ shebang_flags=-kas
+ /usr/bin/pathfix3.9.py -pni /usr/bin/python3 -kas /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.el9.x86_64/usr/bin/__pycache__ /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.el9.x86_64/usr/bin/bcbio_fastq_umi_prep.py /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.el9.x86_64/usr/bin/bcbio_nextgen.py /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.el9.x86_64/usr/bin/bcbio_prepare_samples.py /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.el9.x86_64/usr/bin/bcbio_setup_genome.py /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.el9.x86_64/usr/bin/cwltool2wdl.py
recursedown('/builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.el9.x86_64/usr/bin/__pycache__')
/builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.el9.x86_64/usr/bin/bcbio_fastq_umi_prep.py: updating
/builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.el9.x86_64/usr/bin/bcbio_nextgen.py: updating
/builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.el9.x86_64/usr/bin/bcbio_prepare_samples.py: updating
/builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.el9.x86_64/usr/bin/bcbio_setup_genome.py: updating
/builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.el9.x86_64/usr/bin/cwltool2wdl.py: updating
+ rm -rfv /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.el9.x86_64/usr/bin/__pycache__
removed '/builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.el9.x86_64/usr/bin/__pycache__/cwltool2wdl.cpython-39.pyc'
removed '/builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.el9.x86_64/usr/bin/__pycache__/bcbio_setup_genome.cpython-39.pyc'
removed '/builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.el9.x86_64/usr/bin/__pycache__/bcbio_prepare_samples.cpython-39.pyc'
removed '/builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.el9.x86_64/usr/bin/__pycache__/bcbio_nextgen.cpython-39.pyc'
removed directory '/builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.el9.x86_64/usr/bin/__pycache__'
+ rm -f /builddir/build/BUILD/pyproject-ghost-distinfo
+ site_dirs=()
+ '[' -d /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.el9.x86_64/usr/lib/python3.9/site-packages ']'
+ site_dirs+=("/usr/lib/python3.9/site-packages")
+ '[' /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.el9.x86_64/usr/lib64/python3.9/site-packages '!=' /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.el9.x86_64/usr/lib/python3.9/site-packages ']'
+ '[' -d /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.el9.x86_64/usr/lib64/python3.9/site-packages ']'
+ for site_dir in ${site_dirs[@]}
+ for distinfo in /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.el9.x86_64$site_dir/*.dist-info
+ echo '%ghost /usr/lib/python3.9/site-packages/bcbio_nextgen-1.1.5.dist-info'
+ sed -i s/pip/rpm/ /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.el9.x86_64/usr/lib/python3.9/site-packages/bcbio_nextgen-1.1.5.dist-info/INSTALLER
+ PYTHONPATH=/usr/lib/rpm/redhat
+ /usr/bin/python3 -B /usr/lib/rpm/redhat/pyproject_preprocess_record.py --buildroot /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.el9.x86_64 --record /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.el9.x86_64/usr/lib/python3.9/site-packages/bcbio_nextgen-1.1.5.dist-info/RECORD --output /builddir/build/BUILD/pyproject-record
+ rm -fv /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.el9.x86_64/usr/lib/python3.9/site-packages/bcbio_nextgen-1.1.5.dist-info/RECORD
removed '/builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.el9.x86_64/usr/lib/python3.9/site-packages/bcbio_nextgen-1.1.5.dist-info/RECORD'
+ rm -fv /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.el9.x86_64/usr/lib/python3.9/site-packages/bcbio_nextgen-1.1.5.dist-info/REQUESTED
removed '/builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.el9.x86_64/usr/lib/python3.9/site-packages/bcbio_nextgen-1.1.5.dist-info/REQUESTED'
++ wc -l /builddir/build/BUILD/pyproject-ghost-distinfo
++ cut -f1 '-d '
+ lines=1
+ '[' 1 -ne 1 ']'
+ /usr/bin/python3 /usr/lib/rpm/redhat/pyproject_save_files.py --output-files /builddir/build/BUILD/pyproject-files --output-modules /builddir/build/BUILD/pyproject-modules --buildroot /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.el9.x86_64 --sitelib /usr/lib/python3.9/site-packages --sitearch /usr/lib64/python3.9/site-packages --python-version 3.9 --pyproject-record /builddir/build/BUILD/pyproject-record --prefix /usr '*' +auto
+ /usr/lib/rpm/find-debuginfo.sh -j2 --strict-build-id -m -i --build-id-seed 1.1.5-1.el9 --unique-debug-suffix -1.1.5-1.el9.x86_64 --unique-debug-src-base python-bcbio-nextgen-1.1.5-1.el9.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/bcbio-nextgen-1.1.5
find: 'debug': No such file or directory
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0
Bytecompiling .py files below /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.el9.x86_64/usr/lib/python3.9 using python3.9
/usr/lib/python3.9/site-packages/bcbio/heterogeneity/loh.py:321: SyntaxWarning: "is not" with a literal. Did you mean "!="?
/usr/lib/python3.9/site-packages/bcbio/heterogeneity/loh.py:352: SyntaxWarning: "is not" with a literal. Did you mean "!="?
/usr/lib/python3.9/site-packages/bcbio/heterogeneity/loh.py:321: SyntaxWarning: "is not" with a literal. Did you mean "!="?
/usr/lib/python3.9/site-packages/bcbio/heterogeneity/loh.py:352: SyntaxWarning: "is not" with a literal. Did you mean "!="?
+ /usr/lib/rpm/brp-python-hardlink
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.RPPiTc
+ umask 022
+ cd /builddir/build/BUILD
+ cd bcbio-nextgen-1.1.5
+ '[' '!' -f /builddir/build/BUILD/pyproject-modules ']'
+ PATH=/builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.el9.x86_64/usr/bin:/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin
+ PYTHONPATH=/builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.el9.x86_64/usr/lib64/python3.9/site-packages:/builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.el9.x86_64/usr/lib/python3.9/site-packages
+ _PYTHONSITE=/builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.el9.x86_64/usr/lib64/python3.9/site-packages:/builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.el9.x86_64/usr/lib/python3.9/site-packages
+ PYTHONDONTWRITEBYTECODE=1
+ /usr/bin/python3 -s /usr/lib/rpm/redhat/import_all_modules.py -f /builddir/build/BUILD/pyproject-modules -t
Check import: bcbio
Check import: tests
+ RPM_EC=0
++ jobs -p
+ exit 0
Processing files: python3-bcbio-nextgen-1.1.5-1.el9.noarch
Provides: python-bcbio-nextgen = 1.1.5-1.el9 python3-bcbio-nextgen = 1.1.5-1.el9 python3.9-bcbio-nextgen = 1.1.5-1.el9 python3.9dist(bcbio-nextgen) = 1.1.5 python3dist(bcbio-nextgen) = 1.1.5
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: /usr/bin/python3 python(abi) = 3.9
Obsoletes: python39-bcbio-nextgen < 1.1.5-1.el9
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.el9.x86_64
Wrote: /builddir/build/SRPMS/python-bcbio-nextgen-1.1.5-1.el9.src.rpm
Wrote: /builddir/build/RPMS/python3-bcbio-nextgen-1.1.5-1.el9.noarch.rpm
Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.IvvU3a
+ umask 022
+ cd /builddir/build/BUILD
+ cd bcbio-nextgen-1.1.5
+ /usr/bin/rm -rf /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.el9.x86_64
+ RPM_EC=0
++ jobs -p
+ exit 0
Child return code was: 0