Mock Version: 3.5
ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs  --target x86_64 --nodeps /builddir/build/SPECS/python-pdb2pqr.spec'], chrootPath='/var/lib/mock/rhel+epel-9-x86_64-1678662366.987760/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x7f9fd82812d0>timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.szi5rlcp:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueprintOutput=True)
Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.szi5rlcp:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']
Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', 'deefb6d48fdc404cba7ee2683e767f50', '-D', '/var/lib/mock/rhel+epel-9-x86_64-1678662366.987760/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.szi5rlcp:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;<mock-chroot>\\007"', '--setenv=PS1=<mock-chroot> \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bs  --target x86_64 --nodeps /builddir/build/SPECS/python-pdb2pqr.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1678579200
Wrote: /builddir/build/SRPMS/python-pdb2pqr-3.6.1-1.el9.src.rpm
Child return code was: 0
ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -br  --target x86_64 --nodeps /builddir/build/SPECS/python-pdb2pqr.spec'], chrootPath='/var/lib/mock/rhel+epel-9-x86_64-1678662366.987760/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x7f9fd82812d0>timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.szi5rlcp:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueraiseExc=FalseprintOutput=True)
Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.szi5rlcp:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']
Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '7e2667fcf2dc490284dff4ff45d81ca0', '-D', '/var/lib/mock/rhel+epel-9-x86_64-1678662366.987760/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.szi5rlcp:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;<mock-chroot>\\007"', '--setenv=PS1=<mock-chroot> \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -br  --target x86_64 --nodeps /builddir/build/SPECS/python-pdb2pqr.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1678579200
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.tghiPs
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf pdb2pqr-3.6.1
+ /usr/bin/gzip -dc /builddir/build/SOURCES/pdb2pqr-3.6.1.tar.gz
+ /usr/bin/tar -xof -
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd pdb2pqr-3.6.1
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.g1a90D
+ umask 022
+ cd /builddir/build/BUILD
+ cd pdb2pqr-3.6.1
+ echo pyproject-rpm-macros
+ echo python3-devel
+ echo 'python3dist(pip) >= 19'
+ echo 'python3dist(packaging)'
+ '[' -f pyproject.toml ']'
+ echo '(python3dist(toml) if python3-devel < 3.11)'
+ rm -rfv '*.dist-info/'
+ '[' -f /usr/bin/python3 ']'
+ mkdir -p /builddir/build/BUILD/pdb2pqr-3.6.1/.pyproject-builddir
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 '
+ TMPDIR=/builddir/build/BUILD/pdb2pqr-3.6.1/.pyproject-builddir
+ RPM_TOXENV=py39
+ HOSTNAME=rpmbuild
+ /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/pdb2pqr-3.6.1/pyproject-wheeldir
Import error: No module named 'toml'
+ RPM_EC=0
++ jobs -p
+ exit 0
Wrote: /builddir/build/SRPMS/python-pdb2pqr-3.6.1-1.el9.buildreqs.nosrc.rpm
Child return code was: 11
Dynamic buildrequires detected
Going to install missing buildrequires. See root.log for details.
ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -br  --target x86_64 --nodeps /builddir/build/SPECS/python-pdb2pqr.spec'], chrootPath='/var/lib/mock/rhel+epel-9-x86_64-1678662366.987760/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x7f9fd82812d0>timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.szi5rlcp:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueraiseExc=FalseprintOutput=True)
Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.szi5rlcp:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']
Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '1a64b3cedb1f4ab69895dda1fa847293', '-D', '/var/lib/mock/rhel+epel-9-x86_64-1678662366.987760/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.szi5rlcp:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;<mock-chroot>\\007"', '--setenv=PS1=<mock-chroot> \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -br  --target x86_64 --nodeps /builddir/build/SPECS/python-pdb2pqr.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1678579200
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.GPn6ub
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf pdb2pqr-3.6.1
+ /usr/bin/gzip -dc /builddir/build/SOURCES/pdb2pqr-3.6.1.tar.gz
+ /usr/bin/tar -xof -
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd pdb2pqr-3.6.1
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.OHZd26
+ umask 022
+ cd /builddir/build/BUILD
+ cd pdb2pqr-3.6.1
+ echo pyproject-rpm-macros
+ echo python3-devel
+ echo 'python3dist(pip) >= 19'
+ echo 'python3dist(packaging)'
+ '[' -f pyproject.toml ']'
+ echo '(python3dist(toml) if python3-devel < 3.11)'
+ rm -rfv '*.dist-info/'
+ '[' -f /usr/bin/python3 ']'
+ mkdir -p /builddir/build/BUILD/pdb2pqr-3.6.1/.pyproject-builddir
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 '
+ TMPDIR=/builddir/build/BUILD/pdb2pqr-3.6.1/.pyproject-builddir
+ RPM_TOXENV=py39
+ HOSTNAME=rpmbuild
+ /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/pdb2pqr-3.6.1/pyproject-wheeldir
Handling setuptools >= 40.8 from default build backend
Requirement satisfied: setuptools >= 40.8
   (installed: setuptools 67.6.0)
Handling wheel from default build backend
Requirement not satisfied: wheel
Exiting dependency generation pass: build backend
+ RPM_EC=0
++ jobs -p
+ exit 0
Wrote: /builddir/build/SRPMS/python-pdb2pqr-3.6.1-1.el9.buildreqs.nosrc.rpm
Child return code was: 11
Dynamic buildrequires detected
Going to install missing buildrequires. See root.log for details.
ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -br  --target x86_64 --nodeps /builddir/build/SPECS/python-pdb2pqr.spec'], chrootPath='/var/lib/mock/rhel+epel-9-x86_64-1678662366.987760/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x7f9fd82812d0>timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.szi5rlcp:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueraiseExc=FalseprintOutput=True)
Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.szi5rlcp:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']
Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', 'a5b91a96d86e4a9eb3185ebfa648dde8', '-D', '/var/lib/mock/rhel+epel-9-x86_64-1678662366.987760/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.szi5rlcp:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;<mock-chroot>\\007"', '--setenv=PS1=<mock-chroot> \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -br  --target x86_64 --nodeps /builddir/build/SPECS/python-pdb2pqr.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1678579200
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.JXEPYQ
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf pdb2pqr-3.6.1
+ /usr/bin/gzip -dc /builddir/build/SOURCES/pdb2pqr-3.6.1.tar.gz
+ /usr/bin/tar -xof -
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd pdb2pqr-3.6.1
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.gPoNi8
+ umask 022
+ cd /builddir/build/BUILD
+ cd pdb2pqr-3.6.1
+ echo pyproject-rpm-macros
+ echo python3-devel
+ echo 'python3dist(pip) >= 19'
+ echo 'python3dist(packaging)'
+ '[' -f pyproject.toml ']'
+ echo '(python3dist(toml) if python3-devel < 3.11)'
+ rm -rfv '*.dist-info/'
+ '[' -f /usr/bin/python3 ']'
+ mkdir -p /builddir/build/BUILD/pdb2pqr-3.6.1/.pyproject-builddir
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 '
+ TMPDIR=/builddir/build/BUILD/pdb2pqr-3.6.1/.pyproject-builddir
+ RPM_TOXENV=py39
+ HOSTNAME=rpmbuild
+ /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/pdb2pqr-3.6.1/pyproject-wheeldir
Handling setuptools >= 40.8 from default build backend
Requirement satisfied: setuptools >= 40.8
   (installed: setuptools 67.6.0)
Handling wheel from default build backend
Requirement satisfied: wheel
   (installed: wheel 0.36.2)
HOOK STDOUT: running egg_info
HOOK STDOUT: writing pdb2pqr.egg-info/PKG-INFO
HOOK STDOUT: writing dependency_links to pdb2pqr.egg-info/dependency_links.txt
HOOK STDOUT: writing entry points to pdb2pqr.egg-info/entry_points.txt
HOOK STDOUT: writing requirements to pdb2pqr.egg-info/requires.txt
HOOK STDOUT: writing top-level names to pdb2pqr.egg-info/top_level.txt
HOOK STDOUT: reading manifest file 'pdb2pqr.egg-info/SOURCES.txt'
HOOK STDOUT: reading manifest template 'MANIFEST.in'
HOOK STDOUT: adding license file 'LICENSE.md'
HOOK STDOUT: adding license file 'COPYING'
HOOK STDOUT: writing manifest file 'pdb2pqr.egg-info/SOURCES.txt'
Handling wheel from get_requires_for_build_wheel
Requirement satisfied: wheel
   (installed: wheel 0.36.2)
Handling mmcif-pdbx (>=1.1.2) from hook generated metadata: Requires-Dist
Requirement not satisfied: mmcif-pdbx (>=1.1.2)
Handling numpy from hook generated metadata: Requires-Dist
Requirement not satisfied: numpy
Handling propka (>=3.5) from hook generated metadata: Requires-Dist
Requirement not satisfied: propka (>=3.5)
Handling requests from hook generated metadata: Requires-Dist
Requirement not satisfied: requests
Handling docutils (<0.18) from hook generated metadata: Requires-Dist
Requirement not satisfied: docutils (<0.18)
Handling check-manifest ; extra == 'dev' from hook generated metadata: Requires-Dist
Ignoring alien requirement: check-manifest ; extra == 'dev'
Handling black ; extra == 'test' from hook generated metadata: Requires-Dist
Ignoring alien requirement: black ; extra == 'test'
Handling coverage ; extra == 'test' from hook generated metadata: Requires-Dist
Ignoring alien requirement: coverage ; extra == 'test'
Handling flake8 ; extra == 'test' from hook generated metadata: Requires-Dist
Ignoring alien requirement: flake8 ; extra == 'test'
Handling pandas (>=1.0) ; extra == 'test' from hook generated metadata: Requires-Dist
Ignoring alien requirement: pandas (>=1.0) ; extra == 'test'
Handling pytest ; extra == 'test' from hook generated metadata: Requires-Dist
Ignoring alien requirement: pytest ; extra == 'test'
Handling testfixtures ; extra == 'test' from hook generated metadata: Requires-Dist
Ignoring alien requirement: testfixtures ; extra == 'test'
+ RPM_EC=0
++ jobs -p
+ exit 0
Wrote: /builddir/build/SRPMS/python-pdb2pqr-3.6.1-1.el9.buildreqs.nosrc.rpm
Child return code was: 11
Dynamic buildrequires detected
Going to install missing buildrequires. See root.log for details.
ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -br  --target x86_64 --nodeps /builddir/build/SPECS/python-pdb2pqr.spec'], chrootPath='/var/lib/mock/rhel+epel-9-x86_64-1678662366.987760/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x7f9fd82812d0>timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.szi5rlcp:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueraiseExc=FalseprintOutput=True)
Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.szi5rlcp:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']
Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '8ca1012c7e9248c4a3e2c17c47120815', '-D', '/var/lib/mock/rhel+epel-9-x86_64-1678662366.987760/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.szi5rlcp:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;<mock-chroot>\\007"', '--setenv=PS1=<mock-chroot> \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -br  --target x86_64 --nodeps /builddir/build/SPECS/python-pdb2pqr.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1678579200
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.RnxB8T
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf pdb2pqr-3.6.1
+ /usr/bin/gzip -dc /builddir/build/SOURCES/pdb2pqr-3.6.1.tar.gz
+ /usr/bin/tar -xof -
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd pdb2pqr-3.6.1
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.LcVJ0l
+ umask 022
+ cd /builddir/build/BUILD
+ cd pdb2pqr-3.6.1
+ echo pyproject-rpm-macros
+ echo python3-devel
+ echo 'python3dist(pip) >= 19'
+ echo 'python3dist(packaging)'
+ '[' -f pyproject.toml ']'
+ echo '(python3dist(toml) if python3-devel < 3.11)'
+ rm -rfv '*.dist-info/'
+ '[' -f /usr/bin/python3 ']'
+ mkdir -p /builddir/build/BUILD/pdb2pqr-3.6.1/.pyproject-builddir
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 '
+ TMPDIR=/builddir/build/BUILD/pdb2pqr-3.6.1/.pyproject-builddir
+ RPM_TOXENV=py39
+ HOSTNAME=rpmbuild
+ /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/pdb2pqr-3.6.1/pyproject-wheeldir
Handling setuptools >= 40.8 from default build backend
Requirement satisfied: setuptools >= 40.8
   (installed: setuptools 67.6.0)
Handling wheel from default build backend
Requirement satisfied: wheel
   (installed: wheel 0.36.2)
HOOK STDOUT: running egg_info
HOOK STDOUT: writing pdb2pqr.egg-info/PKG-INFO
HOOK STDOUT: writing dependency_links to pdb2pqr.egg-info/dependency_links.txt
HOOK STDOUT: writing entry points to pdb2pqr.egg-info/entry_points.txt
HOOK STDOUT: writing requirements to pdb2pqr.egg-info/requires.txt
HOOK STDOUT: writing top-level names to pdb2pqr.egg-info/top_level.txt
HOOK STDOUT: reading manifest file 'pdb2pqr.egg-info/SOURCES.txt'
HOOK STDOUT: reading manifest template 'MANIFEST.in'
HOOK STDOUT: adding license file 'LICENSE.md'
HOOK STDOUT: adding license file 'COPYING'
HOOK STDOUT: writing manifest file 'pdb2pqr.egg-info/SOURCES.txt'
Handling wheel from get_requires_for_build_wheel
Requirement satisfied: wheel
   (installed: wheel 0.36.2)
Handling mmcif-pdbx (>=1.1.2) from hook generated metadata: Requires-Dist
Requirement satisfied: mmcif-pdbx (>=1.1.2)
   (installed: mmcif-pdbx 2.0.1)
Handling numpy from hook generated metadata: Requires-Dist
Requirement satisfied: numpy
   (installed: numpy 1.20.1)
Handling propka (>=3.5) from hook generated metadata: Requires-Dist
Requirement satisfied: propka (>=3.5)
   (installed: propka 3.5.0)
Handling requests from hook generated metadata: Requires-Dist
Requirement satisfied: requests
   (installed: requests 2.28.2)
Handling docutils (<0.18) from hook generated metadata: Requires-Dist
Requirement satisfied: docutils (<0.18)
   (installed: docutils 0.16)
Handling check-manifest ; extra == 'dev' from hook generated metadata: Requires-Dist
Ignoring alien requirement: check-manifest ; extra == 'dev'
Handling black ; extra == 'test' from hook generated metadata: Requires-Dist
Ignoring alien requirement: black ; extra == 'test'
Handling coverage ; extra == 'test' from hook generated metadata: Requires-Dist
Ignoring alien requirement: coverage ; extra == 'test'
Handling flake8 ; extra == 'test' from hook generated metadata: Requires-Dist
Ignoring alien requirement: flake8 ; extra == 'test'
Handling pandas (>=1.0) ; extra == 'test' from hook generated metadata: Requires-Dist
Ignoring alien requirement: pandas (>=1.0) ; extra == 'test'
Handling pytest ; extra == 'test' from hook generated metadata: Requires-Dist
Ignoring alien requirement: pytest ; extra == 'test'
Handling testfixtures ; extra == 'test' from hook generated metadata: Requires-Dist
Ignoring alien requirement: testfixtures ; extra == 'test'
+ RPM_EC=0
++ jobs -p
+ exit 0
Wrote: /builddir/build/SRPMS/python-pdb2pqr-3.6.1-1.el9.buildreqs.nosrc.rpm
Child return code was: 11
Dynamic buildrequires detected
Going to install missing buildrequires. See root.log for details.
ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -ba --noprep  --target x86_64 --nodeps /builddir/build/SPECS/python-pdb2pqr.spec'], chrootPath='/var/lib/mock/rhel+epel-9-x86_64-1678662366.987760/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x7f9fd82812d0>timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.szi5rlcp:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueprintOutput=True)
Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.szi5rlcp:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']
Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '1c75dbb8ef4043ddb3e537629efa0acc', '-D', '/var/lib/mock/rhel+epel-9-x86_64-1678662366.987760/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.szi5rlcp:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;<mock-chroot>\\007"', '--setenv=PS1=<mock-chroot> \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -ba --noprep  --target x86_64 --nodeps /builddir/build/SPECS/python-pdb2pqr.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1678579200
Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.SfhhCL
+ umask 022
+ cd /builddir/build/BUILD
+ cd pdb2pqr-3.6.1
+ echo pyproject-rpm-macros
+ echo python3-devel
+ echo 'python3dist(pip) >= 19'
+ echo 'python3dist(packaging)'
+ '[' -f pyproject.toml ']'
+ echo '(python3dist(toml) if python3-devel < 3.11)'
+ rm -rfv pdb2pqr-3.6.1.dist-info/
removed 'pdb2pqr-3.6.1.dist-info/LICENSE.md'
removed 'pdb2pqr-3.6.1.dist-info/COPYING'
removed 'pdb2pqr-3.6.1.dist-info/METADATA'
removed 'pdb2pqr-3.6.1.dist-info/entry_points.txt'
removed 'pdb2pqr-3.6.1.dist-info/top_level.txt'
removed directory 'pdb2pqr-3.6.1.dist-info/'
+ '[' -f /usr/bin/python3 ']'
+ mkdir -p /builddir/build/BUILD/pdb2pqr-3.6.1/.pyproject-builddir
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 '
+ TMPDIR=/builddir/build/BUILD/pdb2pqr-3.6.1/.pyproject-builddir
+ RPM_TOXENV=py39
+ HOSTNAME=rpmbuild
+ /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/pdb2pqr-3.6.1/pyproject-wheeldir
Handling setuptools >= 40.8 from default build backend
Requirement satisfied: setuptools >= 40.8
   (installed: setuptools 67.6.0)
Handling wheel from default build backend
Requirement satisfied: wheel
   (installed: wheel 0.36.2)
HOOK STDOUT: running egg_info
HOOK STDOUT: writing pdb2pqr.egg-info/PKG-INFO
HOOK STDOUT: writing dependency_links to pdb2pqr.egg-info/dependency_links.txt
HOOK STDOUT: writing entry points to pdb2pqr.egg-info/entry_points.txt
HOOK STDOUT: writing requirements to pdb2pqr.egg-info/requires.txt
HOOK STDOUT: writing top-level names to pdb2pqr.egg-info/top_level.txt
HOOK STDOUT: reading manifest file 'pdb2pqr.egg-info/SOURCES.txt'
HOOK STDOUT: reading manifest template 'MANIFEST.in'
HOOK STDOUT: adding license file 'LICENSE.md'
HOOK STDOUT: adding license file 'COPYING'
HOOK STDOUT: writing manifest file 'pdb2pqr.egg-info/SOURCES.txt'
Handling wheel from get_requires_for_build_wheel
Requirement satisfied: wheel
   (installed: wheel 0.36.2)
Handling mmcif-pdbx (>=1.1.2) from hook generated metadata: Requires-Dist
Requirement satisfied: mmcif-pdbx (>=1.1.2)
   (installed: mmcif-pdbx 2.0.1)
Handling numpy from hook generated metadata: Requires-Dist
Requirement satisfied: numpy
   (installed: numpy 1.20.1)
Handling propka (>=3.5) from hook generated metadata: Requires-Dist
Requirement satisfied: propka (>=3.5)
   (installed: propka 3.5.0)
Handling requests from hook generated metadata: Requires-Dist
Requirement satisfied: requests
   (installed: requests 2.28.2)
Handling docutils (<0.18) from hook generated metadata: Requires-Dist
Requirement satisfied: docutils (<0.18)
   (installed: docutils 0.16)
Handling check-manifest ; extra == 'dev' from hook generated metadata: Requires-Dist
Ignoring alien requirement: check-manifest ; extra == 'dev'
Handling black ; extra == 'test' from hook generated metadata: Requires-Dist
Ignoring alien requirement: black ; extra == 'test'
Handling coverage ; extra == 'test' from hook generated metadata: Requires-Dist
Ignoring alien requirement: coverage ; extra == 'test'
Handling flake8 ; extra == 'test' from hook generated metadata: Requires-Dist
Ignoring alien requirement: flake8 ; extra == 'test'
Handling pandas (>=1.0) ; extra == 'test' from hook generated metadata: Requires-Dist
Ignoring alien requirement: pandas (>=1.0) ; extra == 'test'
Handling pytest ; extra == 'test' from hook generated metadata: Requires-Dist
Ignoring alien requirement: pytest ; extra == 'test'
Handling testfixtures ; extra == 'test' from hook generated metadata: Requires-Dist
Ignoring alien requirement: testfixtures ; extra == 'test'
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.1Atvyh
+ umask 022
+ cd /builddir/build/BUILD
+ cd pdb2pqr-3.6.1
+ mkdir -p /builddir/build/BUILD/pdb2pqr-3.6.1/.pyproject-builddir
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 '
+ TMPDIR=/builddir/build/BUILD/pdb2pqr-3.6.1/.pyproject-builddir
+ /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_wheel.py /builddir/build/BUILD/pdb2pqr-3.6.1/pyproject-wheeldir
Processing /builddir/build/BUILD/pdb2pqr-3.6.1
  Preparing metadata (pyproject.toml): started
  Running command Preparing metadata (pyproject.toml)
  running dist_info
  creating /builddir/build/BUILD/pdb2pqr-3.6.1/.pyproject-builddir/pip-modern-metadata-fvstw7ns/pdb2pqr.egg-info
  writing /builddir/build/BUILD/pdb2pqr-3.6.1/.pyproject-builddir/pip-modern-metadata-fvstw7ns/pdb2pqr.egg-info/PKG-INFO
  writing dependency_links to /builddir/build/BUILD/pdb2pqr-3.6.1/.pyproject-builddir/pip-modern-metadata-fvstw7ns/pdb2pqr.egg-info/dependency_links.txt
  writing entry points to /builddir/build/BUILD/pdb2pqr-3.6.1/.pyproject-builddir/pip-modern-metadata-fvstw7ns/pdb2pqr.egg-info/entry_points.txt
  writing requirements to /builddir/build/BUILD/pdb2pqr-3.6.1/.pyproject-builddir/pip-modern-metadata-fvstw7ns/pdb2pqr.egg-info/requires.txt
  writing top-level names to /builddir/build/BUILD/pdb2pqr-3.6.1/.pyproject-builddir/pip-modern-metadata-fvstw7ns/pdb2pqr.egg-info/top_level.txt
  writing manifest file '/builddir/build/BUILD/pdb2pqr-3.6.1/.pyproject-builddir/pip-modern-metadata-fvstw7ns/pdb2pqr.egg-info/SOURCES.txt'
  reading manifest file '/builddir/build/BUILD/pdb2pqr-3.6.1/.pyproject-builddir/pip-modern-metadata-fvstw7ns/pdb2pqr.egg-info/SOURCES.txt'
  reading manifest template 'MANIFEST.in'
  adding license file 'LICENSE.md'
  adding license file 'COPYING'
  writing manifest file '/builddir/build/BUILD/pdb2pqr-3.6.1/.pyproject-builddir/pip-modern-metadata-fvstw7ns/pdb2pqr.egg-info/SOURCES.txt'
  creating '/builddir/build/BUILD/pdb2pqr-3.6.1/.pyproject-builddir/pip-modern-metadata-fvstw7ns/pdb2pqr-3.6.1.dist-info'
  adding license file "LICENSE.md" (matched pattern "LICEN[CS]E*")
  adding license file "COPYING" (matched pattern "COPYING*")
  Preparing metadata (pyproject.toml): finished with status 'done'
Building wheels for collected packages: pdb2pqr
  Building wheel for pdb2pqr (pyproject.toml): started
  Running command Building wheel for pdb2pqr (pyproject.toml)
  running bdist_wheel
  running build
  running build_py
  creating build
  creating build/lib
  creating build/lib/pdb2pqr
  copying pdb2pqr/utilities.py -> build/lib/pdb2pqr
  copying pdb2pqr/topology.py -> build/lib/pdb2pqr
  copying pdb2pqr/structures.py -> build/lib/pdb2pqr
  copying pdb2pqr/run.py -> build/lib/pdb2pqr
  copying pdb2pqr/residue.py -> build/lib/pdb2pqr
  copying pdb2pqr/quatfit.py -> build/lib/pdb2pqr
  copying pdb2pqr/psize.py -> build/lib/pdb2pqr
  copying pdb2pqr/pdb.py -> build/lib/pdb2pqr
  copying pdb2pqr/na.py -> build/lib/pdb2pqr
  copying pdb2pqr/main.py -> build/lib/pdb2pqr
  copying pdb2pqr/io.py -> build/lib/pdb2pqr
  copying pdb2pqr/inputgen.py -> build/lib/pdb2pqr
  copying pdb2pqr/forcefield.py -> build/lib/pdb2pqr
  copying pdb2pqr/definitions.py -> build/lib/pdb2pqr
  copying pdb2pqr/debump.py -> build/lib/pdb2pqr
  copying pdb2pqr/config.py -> build/lib/pdb2pqr
  copying pdb2pqr/cif.py -> build/lib/pdb2pqr
  copying pdb2pqr/cells.py -> build/lib/pdb2pqr
  copying pdb2pqr/biomolecule.py -> build/lib/pdb2pqr
  copying pdb2pqr/aa.py -> build/lib/pdb2pqr
  copying pdb2pqr/_version.py -> build/lib/pdb2pqr
  copying pdb2pqr/__main__.py -> build/lib/pdb2pqr
  copying pdb2pqr/__init__.py -> build/lib/pdb2pqr
  creating build/lib/pdb2pqr/ligand
  copying pdb2pqr/ligand/topology.py -> build/lib/pdb2pqr/ligand
  copying pdb2pqr/ligand/peoe.py -> build/lib/pdb2pqr/ligand
  copying pdb2pqr/ligand/mol2.py -> build/lib/pdb2pqr/ligand
  copying pdb2pqr/ligand/__init__.py -> build/lib/pdb2pqr/ligand
  creating build/lib/pdb2pqr/hydrogens
  copying pdb2pqr/hydrogens/structures.py -> build/lib/pdb2pqr/hydrogens
  copying pdb2pqr/hydrogens/optimize.py -> build/lib/pdb2pqr/hydrogens
  copying pdb2pqr/hydrogens/__init__.py -> build/lib/pdb2pqr/hydrogens
  creating build/lib/pdb2pqr/dat
  copying pdb2pqr/dat/TOPOLOGY.xml -> build/lib/pdb2pqr/dat
  copying pdb2pqr/dat/PATCHES.xml -> build/lib/pdb2pqr/dat
  copying pdb2pqr/dat/NA.xml -> build/lib/pdb2pqr/dat
  copying pdb2pqr/dat/HYDROGENS.xml -> build/lib/pdb2pqr/dat
  copying pdb2pqr/dat/AA.xml -> build/lib/pdb2pqr/dat
  copying pdb2pqr/dat/TYL06.DAT -> build/lib/pdb2pqr/dat
  copying pdb2pqr/dat/SWANSON.DAT -> build/lib/pdb2pqr/dat
  copying pdb2pqr/dat/PEOEPB.DAT -> build/lib/pdb2pqr/dat
  copying pdb2pqr/dat/PARSE.DAT -> build/lib/pdb2pqr/dat
  copying pdb2pqr/dat/CHARMM.DAT -> build/lib/pdb2pqr/dat
  copying pdb2pqr/dat/AMBER.DAT -> build/lib/pdb2pqr/dat
  copying pdb2pqr/dat/TYL06.names -> build/lib/pdb2pqr/dat
  copying pdb2pqr/dat/SWANSON.names -> build/lib/pdb2pqr/dat
  copying pdb2pqr/dat/PEOEPB.names -> build/lib/pdb2pqr/dat
  copying pdb2pqr/dat/PARSE.names -> build/lib/pdb2pqr/dat
  copying pdb2pqr/dat/CHARMM.names -> build/lib/pdb2pqr/dat
  copying pdb2pqr/dat/AMBER.names -> build/lib/pdb2pqr/dat
  installing to build/bdist.linux-x86_64/wheel
  running install
  running install_lib
  creating build/bdist.linux-x86_64
  creating build/bdist.linux-x86_64/wheel
  creating build/bdist.linux-x86_64/wheel/pdb2pqr
  creating build/bdist.linux-x86_64/wheel/pdb2pqr/dat
  copying build/lib/pdb2pqr/dat/AMBER.names -> build/bdist.linux-x86_64/wheel/pdb2pqr/dat
  copying build/lib/pdb2pqr/dat/CHARMM.names -> build/bdist.linux-x86_64/wheel/pdb2pqr/dat
  copying build/lib/pdb2pqr/dat/PARSE.names -> build/bdist.linux-x86_64/wheel/pdb2pqr/dat
  copying build/lib/pdb2pqr/dat/PEOEPB.names -> build/bdist.linux-x86_64/wheel/pdb2pqr/dat
  copying build/lib/pdb2pqr/dat/SWANSON.names -> build/bdist.linux-x86_64/wheel/pdb2pqr/dat
  copying build/lib/pdb2pqr/dat/TYL06.names -> build/bdist.linux-x86_64/wheel/pdb2pqr/dat
  copying build/lib/pdb2pqr/dat/AMBER.DAT -> build/bdist.linux-x86_64/wheel/pdb2pqr/dat
  copying build/lib/pdb2pqr/dat/CHARMM.DAT -> build/bdist.linux-x86_64/wheel/pdb2pqr/dat
  copying build/lib/pdb2pqr/dat/PARSE.DAT -> build/bdist.linux-x86_64/wheel/pdb2pqr/dat
  copying build/lib/pdb2pqr/dat/PEOEPB.DAT -> build/bdist.linux-x86_64/wheel/pdb2pqr/dat
  copying build/lib/pdb2pqr/dat/SWANSON.DAT -> build/bdist.linux-x86_64/wheel/pdb2pqr/dat
  copying build/lib/pdb2pqr/dat/TYL06.DAT -> build/bdist.linux-x86_64/wheel/pdb2pqr/dat
  copying build/lib/pdb2pqr/dat/AA.xml -> build/bdist.linux-x86_64/wheel/pdb2pqr/dat
  copying build/lib/pdb2pqr/dat/HYDROGENS.xml -> build/bdist.linux-x86_64/wheel/pdb2pqr/dat
  copying build/lib/pdb2pqr/dat/NA.xml -> build/bdist.linux-x86_64/wheel/pdb2pqr/dat
  copying build/lib/pdb2pqr/dat/PATCHES.xml -> build/bdist.linux-x86_64/wheel/pdb2pqr/dat
  copying build/lib/pdb2pqr/dat/TOPOLOGY.xml -> build/bdist.linux-x86_64/wheel/pdb2pqr/dat
  creating build/bdist.linux-x86_64/wheel/pdb2pqr/hydrogens
  copying build/lib/pdb2pqr/hydrogens/__init__.py -> build/bdist.linux-x86_64/wheel/pdb2pqr/hydrogens
  copying build/lib/pdb2pqr/hydrogens/optimize.py -> build/bdist.linux-x86_64/wheel/pdb2pqr/hydrogens
  copying build/lib/pdb2pqr/hydrogens/structures.py -> build/bdist.linux-x86_64/wheel/pdb2pqr/hydrogens
  creating build/bdist.linux-x86_64/wheel/pdb2pqr/ligand
  copying build/lib/pdb2pqr/ligand/__init__.py -> build/bdist.linux-x86_64/wheel/pdb2pqr/ligand
  copying build/lib/pdb2pqr/ligand/mol2.py -> build/bdist.linux-x86_64/wheel/pdb2pqr/ligand
  copying build/lib/pdb2pqr/ligand/peoe.py -> build/bdist.linux-x86_64/wheel/pdb2pqr/ligand
  copying build/lib/pdb2pqr/ligand/topology.py -> build/bdist.linux-x86_64/wheel/pdb2pqr/ligand
  copying build/lib/pdb2pqr/__init__.py -> build/bdist.linux-x86_64/wheel/pdb2pqr
  copying build/lib/pdb2pqr/__main__.py -> build/bdist.linux-x86_64/wheel/pdb2pqr
  copying build/lib/pdb2pqr/_version.py -> build/bdist.linux-x86_64/wheel/pdb2pqr
  copying build/lib/pdb2pqr/aa.py -> build/bdist.linux-x86_64/wheel/pdb2pqr
  copying build/lib/pdb2pqr/biomolecule.py -> build/bdist.linux-x86_64/wheel/pdb2pqr
  copying build/lib/pdb2pqr/cells.py -> build/bdist.linux-x86_64/wheel/pdb2pqr
  copying build/lib/pdb2pqr/cif.py -> build/bdist.linux-x86_64/wheel/pdb2pqr
  copying build/lib/pdb2pqr/config.py -> build/bdist.linux-x86_64/wheel/pdb2pqr
  copying build/lib/pdb2pqr/debump.py -> build/bdist.linux-x86_64/wheel/pdb2pqr
  copying build/lib/pdb2pqr/definitions.py -> build/bdist.linux-x86_64/wheel/pdb2pqr
  copying build/lib/pdb2pqr/forcefield.py -> build/bdist.linux-x86_64/wheel/pdb2pqr
  copying build/lib/pdb2pqr/inputgen.py -> build/bdist.linux-x86_64/wheel/pdb2pqr
  copying build/lib/pdb2pqr/io.py -> build/bdist.linux-x86_64/wheel/pdb2pqr
  copying build/lib/pdb2pqr/main.py -> build/bdist.linux-x86_64/wheel/pdb2pqr
  copying build/lib/pdb2pqr/na.py -> build/bdist.linux-x86_64/wheel/pdb2pqr
  copying build/lib/pdb2pqr/pdb.py -> build/bdist.linux-x86_64/wheel/pdb2pqr
  copying build/lib/pdb2pqr/psize.py -> build/bdist.linux-x86_64/wheel/pdb2pqr
  copying build/lib/pdb2pqr/quatfit.py -> build/bdist.linux-x86_64/wheel/pdb2pqr
  copying build/lib/pdb2pqr/residue.py -> build/bdist.linux-x86_64/wheel/pdb2pqr
  copying build/lib/pdb2pqr/run.py -> build/bdist.linux-x86_64/wheel/pdb2pqr
  copying build/lib/pdb2pqr/structures.py -> build/bdist.linux-x86_64/wheel/pdb2pqr
  copying build/lib/pdb2pqr/topology.py -> build/bdist.linux-x86_64/wheel/pdb2pqr
  copying build/lib/pdb2pqr/utilities.py -> build/bdist.linux-x86_64/wheel/pdb2pqr
  running install_egg_info
  running egg_info
  writing pdb2pqr.egg-info/PKG-INFO
  writing dependency_links to pdb2pqr.egg-info/dependency_links.txt
  writing entry points to pdb2pqr.egg-info/entry_points.txt
  writing requirements to pdb2pqr.egg-info/requires.txt
  writing top-level names to pdb2pqr.egg-info/top_level.txt
  reading manifest file 'pdb2pqr.egg-info/SOURCES.txt'
  reading manifest template 'MANIFEST.in'
  adding license file 'LICENSE.md'
  adding license file 'COPYING'
  writing manifest file 'pdb2pqr.egg-info/SOURCES.txt'
  Copying pdb2pqr.egg-info to build/bdist.linux-x86_64/wheel/pdb2pqr-3.6.1-py3.9.egg-info
  running install_scripts
  adding license file "LICENSE.md" (matched pattern "LICEN[CS]E*")
  adding license file "COPYING" (matched pattern "COPYING*")
  creating build/bdist.linux-x86_64/wheel/pdb2pqr-3.6.1.dist-info/WHEEL
  creating '/builddir/build/BUILD/pdb2pqr-3.6.1/.pyproject-builddir/pip-wheel-uerqtejx/.tmp-b38s05z7/pdb2pqr-3.6.1-py2.py3-none-any.whl' and adding 'build/bdist.linux-x86_64/wheel' to it
  adding 'pdb2pqr/__init__.py'
  adding 'pdb2pqr/__main__.py'
  adding 'pdb2pqr/_version.py'
  adding 'pdb2pqr/aa.py'
  adding 'pdb2pqr/biomolecule.py'
  adding 'pdb2pqr/cells.py'
  adding 'pdb2pqr/cif.py'
  adding 'pdb2pqr/config.py'
  adding 'pdb2pqr/debump.py'
  adding 'pdb2pqr/definitions.py'
  adding 'pdb2pqr/forcefield.py'
  adding 'pdb2pqr/inputgen.py'
  adding 'pdb2pqr/io.py'
  adding 'pdb2pqr/main.py'
  adding 'pdb2pqr/na.py'
  adding 'pdb2pqr/pdb.py'
  adding 'pdb2pqr/psize.py'
  adding 'pdb2pqr/quatfit.py'
  adding 'pdb2pqr/residue.py'
  adding 'pdb2pqr/run.py'
  adding 'pdb2pqr/structures.py'
  adding 'pdb2pqr/topology.py'
  adding 'pdb2pqr/utilities.py'
  adding 'pdb2pqr/dat/AA.xml'
  adding 'pdb2pqr/dat/AMBER.DAT'
  adding 'pdb2pqr/dat/AMBER.names'
  adding 'pdb2pqr/dat/CHARMM.DAT'
  adding 'pdb2pqr/dat/CHARMM.names'
  adding 'pdb2pqr/dat/HYDROGENS.xml'
  adding 'pdb2pqr/dat/NA.xml'
  adding 'pdb2pqr/dat/PARSE.DAT'
  adding 'pdb2pqr/dat/PARSE.names'
  adding 'pdb2pqr/dat/PATCHES.xml'
  adding 'pdb2pqr/dat/PEOEPB.DAT'
  adding 'pdb2pqr/dat/PEOEPB.names'
  adding 'pdb2pqr/dat/SWANSON.DAT'
  adding 'pdb2pqr/dat/SWANSON.names'
  adding 'pdb2pqr/dat/TOPOLOGY.xml'
  adding 'pdb2pqr/dat/TYL06.DAT'
  adding 'pdb2pqr/dat/TYL06.names'
  adding 'pdb2pqr/hydrogens/__init__.py'
  adding 'pdb2pqr/hydrogens/optimize.py'
  adding 'pdb2pqr/hydrogens/structures.py'
  adding 'pdb2pqr/ligand/__init__.py'
  adding 'pdb2pqr/ligand/mol2.py'
  adding 'pdb2pqr/ligand/peoe.py'
  adding 'pdb2pqr/ligand/topology.py'
  adding 'pdb2pqr-3.6.1.dist-info/COPYING'
  adding 'pdb2pqr-3.6.1.dist-info/LICENSE.md'
  adding 'pdb2pqr-3.6.1.dist-info/METADATA'
  adding 'pdb2pqr-3.6.1.dist-info/WHEEL'
  adding 'pdb2pqr-3.6.1.dist-info/entry_points.txt'
  adding 'pdb2pqr-3.6.1.dist-info/top_level.txt'
  adding 'pdb2pqr-3.6.1.dist-info/RECORD'
  removing build/bdist.linux-x86_64/wheel
  Building wheel for pdb2pqr (pyproject.toml): finished with status 'done'
  Created wheel for pdb2pqr: filename=pdb2pqr-3.6.1-py2.py3-none-any.whl size=208163 sha256=b9ca5031e779106d70105490771ec173f3170f3c1c99e0af4fe1b6926e9d50db
  Stored in directory: /builddir/.cache/pip/wheels/39/0c/08/59ce659f724368f1a01cafd920aeff38299370d931f00ba50c
Successfully built pdb2pqr
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.1RzpXu
+ umask 022
+ cd /builddir/build/BUILD
+ '[' /builddir/build/BUILDROOT/python-pdb2pqr-3.6.1-1.el9.x86_64 '!=' / ']'
+ rm -rf /builddir/build/BUILDROOT/python-pdb2pqr-3.6.1-1.el9.x86_64
++ dirname /builddir/build/BUILDROOT/python-pdb2pqr-3.6.1-1.el9.x86_64
+ mkdir -p /builddir/build/BUILDROOT
+ mkdir /builddir/build/BUILDROOT/python-pdb2pqr-3.6.1-1.el9.x86_64
+ cd pdb2pqr-3.6.1
++ ls /builddir/build/BUILD/pdb2pqr-3.6.1/pyproject-wheeldir/pdb2pqr-3.6.1-py2.py3-none-any.whl
++ sed -E 's/([^-]+)-([^-]+)-.+\.whl/\1==\2/'
++ xargs basename --multiple
+ specifier=pdb2pqr==3.6.1
+ TMPDIR=/builddir/build/BUILD/pdb2pqr-3.6.1/.pyproject-builddir
+ /usr/bin/python3 -m pip install --root /builddir/build/BUILDROOT/python-pdb2pqr-3.6.1-1.el9.x86_64 --prefix /usr --no-deps --disable-pip-version-check --progress-bar off --verbose --ignore-installed --no-warn-script-location --no-index --no-cache-dir --find-links /builddir/build/BUILD/pdb2pqr-3.6.1/pyproject-wheeldir pdb2pqr==3.6.1
Using pip 22.0.4 from /usr/lib/python3.9/site-packages/pip (python 3.9)
Looking in links: /builddir/build/BUILD/pdb2pqr-3.6.1/pyproject-wheeldir
Processing ./pyproject-wheeldir/pdb2pqr-3.6.1-py2.py3-none-any.whl
Installing collected packages: pdb2pqr
  Creating /builddir/build/BUILDROOT/python-pdb2pqr-3.6.1-1.el9.x86_64/usr/bin
  changing mode of /builddir/build/BUILDROOT/python-pdb2pqr-3.6.1-1.el9.x86_64/usr/bin/dx2cube to 755
  changing mode of /builddir/build/BUILDROOT/python-pdb2pqr-3.6.1-1.el9.x86_64/usr/bin/inputgen to 755
  changing mode of /builddir/build/BUILDROOT/python-pdb2pqr-3.6.1-1.el9.x86_64/usr/bin/pdb2pqr to 755
  changing mode of /builddir/build/BUILDROOT/python-pdb2pqr-3.6.1-1.el9.x86_64/usr/bin/pdb2pqr30 to 755
Successfully installed pdb2pqr-3.6.1
+ '[' -d /builddir/build/BUILDROOT/python-pdb2pqr-3.6.1-1.el9.x86_64/usr/bin ']'
+ '[' -f /usr/bin/pathfix3.9.py ']'
+ pathfix=/usr/bin/pathfix3.9.py
+ '[' -z s ']'
+ shebang_flags=-kas
+ /usr/bin/pathfix3.9.py -pni /usr/bin/python3 -kas /builddir/build/BUILDROOT/python-pdb2pqr-3.6.1-1.el9.x86_64/usr/bin/dx2cube /builddir/build/BUILDROOT/python-pdb2pqr-3.6.1-1.el9.x86_64/usr/bin/inputgen /builddir/build/BUILDROOT/python-pdb2pqr-3.6.1-1.el9.x86_64/usr/bin/pdb2pqr /builddir/build/BUILDROOT/python-pdb2pqr-3.6.1-1.el9.x86_64/usr/bin/pdb2pqr30
/builddir/build/BUILDROOT/python-pdb2pqr-3.6.1-1.el9.x86_64/usr/bin/dx2cube: updating
/builddir/build/BUILDROOT/python-pdb2pqr-3.6.1-1.el9.x86_64/usr/bin/inputgen: updating
/builddir/build/BUILDROOT/python-pdb2pqr-3.6.1-1.el9.x86_64/usr/bin/pdb2pqr: updating
/builddir/build/BUILDROOT/python-pdb2pqr-3.6.1-1.el9.x86_64/usr/bin/pdb2pqr30: updating
+ rm -rfv /builddir/build/BUILDROOT/python-pdb2pqr-3.6.1-1.el9.x86_64/usr/bin/__pycache__
+ rm -f /builddir/build/BUILD/python-pdb2pqr-3.6.1-1.el9.x86_64-pyproject-ghost-distinfo
+ site_dirs=()
+ '[' -d /builddir/build/BUILDROOT/python-pdb2pqr-3.6.1-1.el9.x86_64/usr/lib/python3.9/site-packages ']'
+ site_dirs+=("/usr/lib/python3.9/site-packages")
+ '[' /builddir/build/BUILDROOT/python-pdb2pqr-3.6.1-1.el9.x86_64/usr/lib64/python3.9/site-packages '!=' /builddir/build/BUILDROOT/python-pdb2pqr-3.6.1-1.el9.x86_64/usr/lib/python3.9/site-packages ']'
+ '[' -d /builddir/build/BUILDROOT/python-pdb2pqr-3.6.1-1.el9.x86_64/usr/lib64/python3.9/site-packages ']'
+ for site_dir in ${site_dirs[@]}
+ for distinfo in /builddir/build/BUILDROOT/python-pdb2pqr-3.6.1-1.el9.x86_64$site_dir/*.dist-info
+ echo '%ghost /usr/lib/python3.9/site-packages/pdb2pqr-3.6.1.dist-info'
+ sed -i s/pip/rpm/ /builddir/build/BUILDROOT/python-pdb2pqr-3.6.1-1.el9.x86_64/usr/lib/python3.9/site-packages/pdb2pqr-3.6.1.dist-info/INSTALLER
+ PYTHONPATH=/usr/lib/rpm/redhat
+ /usr/bin/python3 -B /usr/lib/rpm/redhat/pyproject_preprocess_record.py --buildroot /builddir/build/BUILDROOT/python-pdb2pqr-3.6.1-1.el9.x86_64 --record /builddir/build/BUILDROOT/python-pdb2pqr-3.6.1-1.el9.x86_64/usr/lib/python3.9/site-packages/pdb2pqr-3.6.1.dist-info/RECORD --output /builddir/build/BUILD/python-pdb2pqr-3.6.1-1.el9.x86_64-pyproject-record
+ rm -fv /builddir/build/BUILDROOT/python-pdb2pqr-3.6.1-1.el9.x86_64/usr/lib/python3.9/site-packages/pdb2pqr-3.6.1.dist-info/RECORD
removed '/builddir/build/BUILDROOT/python-pdb2pqr-3.6.1-1.el9.x86_64/usr/lib/python3.9/site-packages/pdb2pqr-3.6.1.dist-info/RECORD'
+ rm -fv /builddir/build/BUILDROOT/python-pdb2pqr-3.6.1-1.el9.x86_64/usr/lib/python3.9/site-packages/pdb2pqr-3.6.1.dist-info/REQUESTED
removed '/builddir/build/BUILDROOT/python-pdb2pqr-3.6.1-1.el9.x86_64/usr/lib/python3.9/site-packages/pdb2pqr-3.6.1.dist-info/REQUESTED'
++ wc -l /builddir/build/BUILD/python-pdb2pqr-3.6.1-1.el9.x86_64-pyproject-ghost-distinfo
++ cut -f1 '-d '
+ lines=1
+ '[' 1 -ne 1 ']'
+ /usr/bin/python3 /usr/lib/rpm/redhat/pyproject_save_files.py --output-files /builddir/build/BUILD/python-pdb2pqr-3.6.1-1.el9.x86_64-pyproject-files --output-modules /builddir/build/BUILD/python-pdb2pqr-3.6.1-1.el9.x86_64-pyproject-modules --buildroot /builddir/build/BUILDROOT/python-pdb2pqr-3.6.1-1.el9.x86_64 --sitelib /usr/lib/python3.9/site-packages --sitearch /usr/lib64/python3.9/site-packages --python-version 3.9 --pyproject-record /builddir/build/BUILD/python-pdb2pqr-3.6.1-1.el9.x86_64-pyproject-record --prefix /usr '*' +auto
+ /usr/lib/rpm/find-debuginfo.sh -j2 --strict-build-id -m -i --build-id-seed 3.6.1-1.el9 --unique-debug-suffix -3.6.1-1.el9.x86_64 --unique-debug-src-base python-pdb2pqr-3.6.1-1.el9.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 --remove-section .gnu.build.attributes -S debugsourcefiles.list /builddir/build/BUILD/pdb2pqr-3.6.1
find: 'debug': No such file or directory
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0
Bytecompiling .py files below /builddir/build/BUILDROOT/python-pdb2pqr-3.6.1-1.el9.x86_64/usr/lib/python3.9 using python3.9
+ /usr/lib/rpm/brp-python-hardlink
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
*** WARNING: ./usr/lib/python3.9/site-packages/pdb2pqr-3.6.1.dist-info/top_level.txt is executable but has no shebang, removing executable bit
*** WARNING: ./usr/lib/python3.9/site-packages/pdb2pqr-3.6.1.dist-info/entry_points.txt is executable but has no shebang, removing executable bit
*** WARNING: ./usr/lib/python3.9/site-packages/pdb2pqr-3.6.1.dist-info/LICENSE.md is executable but has no shebang, removing executable bit
*** WARNING: ./usr/lib/python3.9/site-packages/pdb2pqr-3.6.1.dist-info/COPYING is executable but has no shebang, removing executable bit
*** WARNING: ./usr/lib/python3.9/site-packages/pdb2pqr/dat/TYL06.names is executable but has no shebang, removing executable bit
*** WARNING: ./usr/lib/python3.9/site-packages/pdb2pqr/dat/TYL06.DAT is executable but has no shebang, removing executable bit
*** WARNING: ./usr/lib/python3.9/site-packages/pdb2pqr/dat/TOPOLOGY.xml is executable but has no shebang, removing executable bit
*** WARNING: ./usr/lib/python3.9/site-packages/pdb2pqr/dat/SWANSON.names is executable but has no shebang, removing executable bit
*** WARNING: ./usr/lib/python3.9/site-packages/pdb2pqr/dat/SWANSON.DAT is executable but has no shebang, removing executable bit
*** WARNING: ./usr/lib/python3.9/site-packages/pdb2pqr/dat/PEOEPB.names is executable but has no shebang, removing executable bit
*** WARNING: ./usr/lib/python3.9/site-packages/pdb2pqr/dat/PEOEPB.DAT is executable but has no shebang, removing executable bit
*** WARNING: ./usr/lib/python3.9/site-packages/pdb2pqr/dat/PATCHES.xml is executable but has no shebang, removing executable bit
*** WARNING: ./usr/lib/python3.9/site-packages/pdb2pqr/dat/PARSE.names is executable but has no shebang, removing executable bit
*** WARNING: ./usr/lib/python3.9/site-packages/pdb2pqr/dat/PARSE.DAT is executable but has no shebang, removing executable bit
*** WARNING: ./usr/lib/python3.9/site-packages/pdb2pqr/dat/NA.xml is executable but has no shebang, removing executable bit
*** WARNING: ./usr/lib/python3.9/site-packages/pdb2pqr/dat/HYDROGENS.xml is executable but has no shebang, removing executable bit
*** WARNING: ./usr/lib/python3.9/site-packages/pdb2pqr/dat/CHARMM.names is executable but has no shebang, removing executable bit
*** WARNING: ./usr/lib/python3.9/site-packages/pdb2pqr/dat/CHARMM.DAT is executable but has no shebang, removing executable bit
*** WARNING: ./usr/lib/python3.9/site-packages/pdb2pqr/dat/AMBER.names is executable but has no shebang, removing executable bit
*** WARNING: ./usr/lib/python3.9/site-packages/pdb2pqr/dat/AMBER.DAT is executable but has no shebang, removing executable bit
*** WARNING: ./usr/lib/python3.9/site-packages/pdb2pqr/dat/AA.xml is executable but has no shebang, removing executable bit
Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.wr6ZLG
+ umask 022
+ cd /builddir/build/BUILD
+ cd pdb2pqr-3.6.1
+ '[' '!' -f /builddir/build/BUILD/python-pdb2pqr-3.6.1-1.el9.x86_64-pyproject-modules ']'
+ PATH=/builddir/build/BUILDROOT/python-pdb2pqr-3.6.1-1.el9.x86_64/usr/bin:/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin
+ PYTHONPATH=/builddir/build/BUILDROOT/python-pdb2pqr-3.6.1-1.el9.x86_64/usr/lib64/python3.9/site-packages:/builddir/build/BUILDROOT/python-pdb2pqr-3.6.1-1.el9.x86_64/usr/lib/python3.9/site-packages
+ _PYTHONSITE=/builddir/build/BUILDROOT/python-pdb2pqr-3.6.1-1.el9.x86_64/usr/lib64/python3.9/site-packages:/builddir/build/BUILDROOT/python-pdb2pqr-3.6.1-1.el9.x86_64/usr/lib/python3.9/site-packages
+ PYTHONDONTWRITEBYTECODE=1
+ /usr/bin/python3 -s /usr/lib/rpm/redhat/import_all_modules.py -f /builddir/build/BUILD/python-pdb2pqr-3.6.1-1.el9.x86_64-pyproject-modules -t
Check import: pdb2pqr
+ RPM_EC=0
++ jobs -p
+ exit 0
Processing files: python3-pdb2pqr-3.6.1-1.el9.noarch
Provides: python-pdb2pqr = 3.6.1-1.el9 python3-pdb2pqr = 3.6.1-1.el9 python3.9-pdb2pqr = 3.6.1-1.el9 python3.9dist(pdb2pqr) = 3.6.1 python3dist(pdb2pqr) = 3.6.1
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: /usr/bin/python3 python(abi) = 3.9 python3.9dist(docutils) < 0.18 python3.9dist(mmcif-pdbx) >= 1.1.2 python3.9dist(numpy) python3.9dist(propka) >= 3.5 python3.9dist(requests)
Obsoletes: python39-pdb2pqr < 3.6.1-1.el9
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/python-pdb2pqr-3.6.1-1.el9.x86_64
Wrote: /builddir/build/SRPMS/python-pdb2pqr-3.6.1-1.el9.src.rpm
Wrote: /builddir/build/RPMS/python3-pdb2pqr-3.6.1-1.el9.noarch.rpm
Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.8Wl2qj
+ umask 022
+ cd /builddir/build/BUILD
+ cd pdb2pqr-3.6.1
+ /usr/bin/rm -rf /builddir/build/BUILDROOT/python-pdb2pqr-3.6.1-1.el9.x86_64
+ RPM_EC=0
++ jobs -p
+ exit 0
Child return code was: 0