Mock Version: 3.5 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/python-dendropy.spec'], chrootPath='/var/lib/mock/fedora-38-x86_64-1682154481.458880/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.sf1qfxt2:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.sf1qfxt2:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '81b0a8cacccb4e7884333bf5e805759c', '-D', '/var/lib/mock/fedora-38-x86_64-1682154481.458880/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.sf1qfxt2:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/python-dendropy.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1682121600 Wrote: /builddir/build/SRPMS/python-dendropy-4.6.0-1.fc38.src.rpm Child return code was: 0 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -br --target x86_64 --nodeps /builddir/build/SPECS/python-dendropy.spec'], chrootPath='/var/lib/mock/fedora-38-x86_64-1682154481.458880/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.sf1qfxt2:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueraiseExc=FalseprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.sf1qfxt2:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', 'b3feb2755b2246b1b744c956f00bc4fa', '-D', '/var/lib/mock/fedora-38-x86_64-1682154481.458880/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.sf1qfxt2:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -br --target x86_64 --nodeps /builddir/build/SPECS/python-dendropy.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1682121600 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.7VyPv8 + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf DendroPy-4.6.0 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/DendroPy-4.6.0.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd DendroPy-4.6.0 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + RPM_EC=0 ++ jobs -p + exit 0 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.vNuF12 + umask 022 + cd /builddir/build/BUILD + cd DendroPy-4.6.0 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + '[' -f setup.py ']' + echo 'python3dist(setuptools) >= 40.8' + echo 'python3dist(wheel)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/DendroPy-4.6.0/.pyproject-builddir + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + TMPDIR=/builddir/build/BUILD/DendroPy-4.6.0/.pyproject-builddir + RPM_TOXENV=py311 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/DendroPy-4.6.0/pyproject-wheeldir Handling setuptools >= 40.8 from default build backend Requirement not satisfied: setuptools >= 40.8 Handling wheel from default build backend Requirement not satisfied: wheel Exiting dependency generation pass: build backend + rm -rfv '*.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/python-dendropy-4.6.0-1.fc38.buildreqs.nosrc.rpm Child return code was: 11 Dynamic buildrequires detected Going to install missing buildrequires. See root.log for details. ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -br --target x86_64 --nodeps /builddir/build/SPECS/python-dendropy.spec'], chrootPath='/var/lib/mock/fedora-38-x86_64-1682154481.458880/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.sf1qfxt2:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueraiseExc=FalseprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.sf1qfxt2:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', 'f71b7e5be0bf4b8f858a9b39d4a5d7a3', '-D', '/var/lib/mock/fedora-38-x86_64-1682154481.458880/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.sf1qfxt2:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -br --target x86_64 --nodeps /builddir/build/SPECS/python-dendropy.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1682121600 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.yz88P4 + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf DendroPy-4.6.0 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/DendroPy-4.6.0.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd DendroPy-4.6.0 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + RPM_EC=0 ++ jobs -p + exit 0 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.DfJ2W9 + umask 022 + cd /builddir/build/BUILD + cd DendroPy-4.6.0 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + '[' -f setup.py ']' + echo 'python3dist(setuptools) >= 40.8' + echo 'python3dist(wheel)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/DendroPy-4.6.0/.pyproject-builddir + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + TMPDIR=/builddir/build/BUILD/DendroPy-4.6.0/.pyproject-builddir + RPM_TOXENV=py311 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/DendroPy-4.6.0/pyproject-wheeldir Handling setuptools >= 40.8 from default build backend Requirement satisfied: setuptools >= 40.8 (installed: setuptools 67.7.1) Handling wheel from default build backend Requirement satisfied: wheel (installed: wheel 0.38.4) -setup.py: DendroPy version 4.6.0 -setup.py: using setuptools ('/usr/lib/python3.11/site-packages/setuptools/__init__.py') -setup.py: searching for packages -setup.py: packages identified: - dendropy - dendropy.utility - dendropy.simulate - dendropy.model - dendropy.mathlib - dendropy.legacy - dendropy.interop - dendropy.datamodel - dendropy.dataio - dendropy.calculate - dendropy.utility.libexec - dendropy.datamodel.treemodel -setup.py: scripts identified: - applications/sumtrees/sumtrees.py - applications/sumlabels/sumlabels.py - applications/dendropy-format/dendropy-format -setup.py: setuptools command extensions are available warning: no files found matching 'doc/Makefile' warning: no files found matching '*' under directory 'doc/source' warning: no previously-included files matching '.DS_Store' found anywhere in distribution warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '.gitignore' found anywhere in distribution warning: no previously-included files matching '.gitattributes' found anywhere in distribution warning: no previously-included files matching '.idea' found anywhere in distribution warning: no previously-included files matching '__pycache__' found anywhere in distribution HOOK STDOUT: running egg_info HOOK STDOUT: writing src/DendroPy.egg-info/PKG-INFO HOOK STDOUT: writing dependency_links to src/DendroPy.egg-info/dependency_links.txt HOOK STDOUT: deleting src/DendroPy.egg-info/entry_points.txt HOOK STDOUT: writing requirements to src/DendroPy.egg-info/requires.txt HOOK STDOUT: writing top-level names to src/DendroPy.egg-info/top_level.txt HOOK STDOUT: reading manifest file 'src/DendroPy.egg-info/SOURCES.txt' HOOK STDOUT: reading manifest template 'MANIFEST.in' HOOK STDOUT: adding license file 'LICENSE.rst' HOOK STDOUT: adding license file 'AUTHORS.rst' HOOK STDOUT: writing manifest file 'src/DendroPy.egg-info/SOURCES.txt' Handling wheel from get_requires_for_build_wheel Requirement satisfied: wheel (installed: wheel 0.38.4) -setup.py: DendroPy version 4.6.0 -setup.py: using setuptools ('/usr/lib/python3.11/site-packages/setuptools/__init__.py') -setup.py: searching for packages -setup.py: packages identified: - dendropy - dendropy.utility - dendropy.simulate - dendropy.model - dendropy.mathlib - dendropy.legacy - dendropy.interop - dendropy.datamodel - dendropy.dataio - dendropy.calculate - dendropy.utility.libexec - dendropy.datamodel.treemodel -setup.py: scripts identified: - applications/sumtrees/sumtrees.py - applications/sumlabels/sumlabels.py - applications/dendropy-format/dendropy-format -setup.py: setuptools command extensions are available --- Logging error --- Traceback (most recent call last): File "/usr/lib64/python3.11/logging/__init__.py", line 1113, in emit stream.write(msg + self.terminator) ValueError: I/O operation on closed file. Call stack: File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 550, in main(sys.argv[1:]) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 532, in main generate_requires( File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 444, in generate_requires generate_run_requirements(backend, requirements, build_wheel=build_wheel, wheeldir=wheeldir) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 354, in generate_run_requirements generate_run_requirements_hook(backend, requirements) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 310, in generate_run_requirements_hook dir_basename = prepare_metadata('.') File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 380, in prepare_metadata_for_build_wheel self.run_setup() File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 488, in run_setup self).run_setup(setup_script=setup_script) File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 338, in run_setup exec(code, locals()) File "", line 159, in File "/usr/lib/python3.11/site-packages/setuptools/__init__.py", line 107, in setup return distutils.core.setup(**attrs) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/core.py", line 185, in setup return run_commands(dist) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/core.py", line 201, in run_commands dist.run_commands() File "/usr/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 969, in run_commands self.run_command(cmd) File "/usr/lib/python3.11/site-packages/setuptools/dist.py", line 1244, in run_command super().run_command(command) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 985, in run_command log.info("running %s", command) Message: 'running %s' Arguments: ('dist_info',) --- Logging error --- Traceback (most recent call last): File "/usr/lib64/python3.11/logging/__init__.py", line 1113, in emit stream.write(msg + self.terminator) ValueError: I/O operation on closed file. Call stack: File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 550, in main(sys.argv[1:]) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 532, in main generate_requires( File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 444, in generate_requires generate_run_requirements(backend, requirements, build_wheel=build_wheel, wheeldir=wheeldir) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 354, in generate_run_requirements generate_run_requirements_hook(backend, requirements) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 310, in generate_run_requirements_hook dir_basename = prepare_metadata('.') File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 380, in prepare_metadata_for_build_wheel self.run_setup() File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 488, in run_setup self).run_setup(setup_script=setup_script) File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 338, in run_setup exec(code, locals()) File "", line 159, in File "/usr/lib/python3.11/site-packages/setuptools/__init__.py", line 107, in setup return distutils.core.setup(**attrs) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/core.py", line 185, in setup return run_commands(dist) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/core.py", line 201, in run_commands dist.run_commands() File "/usr/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 969, in run_commands self.run_command(cmd) File "/usr/lib/python3.11/site-packages/setuptools/dist.py", line 1244, in run_command super().run_command(command) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 988, in run_command cmd_obj.run() File "/usr/lib/python3.11/site-packages/setuptools/command/dist_info.py", line 99, in run self.egg_info.run() File "/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 302, in run self.mkpath(self.egg_info) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/cmd.py", line 342, in mkpath dir_util.mkpath(name, mode, dry_run=self.dry_run) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/dir_util.py", line 71, in mkpath log.info("creating %s", head) Message: 'creating %s' Arguments: ('DendroPy.egg-info',) --- Logging error --- Traceback (most recent call last): File "/usr/lib64/python3.11/logging/__init__.py", line 1113, in emit stream.write(msg + self.terminator) ValueError: I/O operation on closed file. Call stack: File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 550, in main(sys.argv[1:]) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 532, in main generate_requires( File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 444, in generate_requires generate_run_requirements(backend, requirements, build_wheel=build_wheel, wheeldir=wheeldir) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 354, in generate_run_requirements generate_run_requirements_hook(backend, requirements) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 310, in generate_run_requirements_hook dir_basename = prepare_metadata('.') File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 380, in prepare_metadata_for_build_wheel self.run_setup() File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 488, in run_setup self).run_setup(setup_script=setup_script) File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 338, in run_setup exec(code, locals()) File "", line 159, in File "/usr/lib/python3.11/site-packages/setuptools/__init__.py", line 107, in setup return distutils.core.setup(**attrs) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/core.py", line 185, in setup return run_commands(dist) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/core.py", line 201, in run_commands dist.run_commands() File "/usr/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 969, in run_commands self.run_command(cmd) File "/usr/lib/python3.11/site-packages/setuptools/dist.py", line 1244, in run_command super().run_command(command) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 988, in run_command cmd_obj.run() File "/usr/lib/python3.11/site-packages/setuptools/command/dist_info.py", line 99, in run self.egg_info.run() File "/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 310, in run writer(self, ep.name, os.path.join(self.egg_info, ep.name)) File "/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 690, in write_pkg_info log.info("writing %s", filename) Message: 'writing %s' Arguments: ('DendroPy.egg-info/PKG-INFO',) --- Logging error --- Traceback (most recent call last): File "/usr/lib64/python3.11/logging/__init__.py", line 1113, in emit stream.write(msg + self.terminator) ValueError: I/O operation on closed file. Call stack: File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 550, in main(sys.argv[1:]) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 532, in main generate_requires( File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 444, in generate_requires generate_run_requirements(backend, requirements, build_wheel=build_wheel, wheeldir=wheeldir) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 354, in generate_run_requirements generate_run_requirements_hook(backend, requirements) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 310, in generate_run_requirements_hook dir_basename = prepare_metadata('.') File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 380, in prepare_metadata_for_build_wheel self.run_setup() File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 488, in run_setup self).run_setup(setup_script=setup_script) File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 338, in run_setup exec(code, locals()) File "", line 159, in File "/usr/lib/python3.11/site-packages/setuptools/__init__.py", line 107, in setup return distutils.core.setup(**attrs) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/core.py", line 185, in setup return run_commands(dist) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/core.py", line 201, in run_commands dist.run_commands() File "/usr/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 969, in run_commands self.run_command(cmd) File "/usr/lib/python3.11/site-packages/setuptools/dist.py", line 1244, in run_command super().run_command(command) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 988, in run_command cmd_obj.run() File "/usr/lib/python3.11/site-packages/setuptools/command/dist_info.py", line 99, in run self.egg_info.run() File "/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 310, in run writer(self, ep.name, os.path.join(self.egg_info, ep.name)) File "/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 759, in overwrite_arg write_arg(cmd, basename, filename, True) File "/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 767, in write_arg cmd.write_or_delete_file(argname, filename, value, force) File "/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 272, in write_or_delete_file self.write_file(what, filename, data) File "/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 288, in write_file log.info("writing %s to %s", what, filename) Message: 'writing %s to %s' Arguments: ('dependency_links', 'DendroPy.egg-info/dependency_links.txt') --- Logging error --- Traceback (most recent call last): File "/usr/lib64/python3.11/logging/__init__.py", line 1113, in emit stream.write(msg + self.terminator) ValueError: I/O operation on closed file. Call stack: File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 550, in main(sys.argv[1:]) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 532, in main generate_requires( File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 444, in generate_requires generate_run_requirements(backend, requirements, build_wheel=build_wheel, wheeldir=wheeldir) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 354, in generate_run_requirements generate_run_requirements_hook(backend, requirements) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 310, in generate_run_requirements_hook dir_basename = prepare_metadata('.') File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 380, in prepare_metadata_for_build_wheel self.run_setup() File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 488, in run_setup self).run_setup(setup_script=setup_script) File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 338, in run_setup exec(code, locals()) File "", line 159, in File "/usr/lib/python3.11/site-packages/setuptools/__init__.py", line 107, in setup return distutils.core.setup(**attrs) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/core.py", line 185, in setup return run_commands(dist) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/core.py", line 201, in run_commands dist.run_commands() File "/usr/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 969, in run_commands self.run_command(cmd) File "/usr/lib/python3.11/site-packages/setuptools/dist.py", line 1244, in run_command super().run_command(command) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 988, in run_command cmd_obj.run() File "/usr/lib/python3.11/site-packages/setuptools/command/dist_info.py", line 99, in run self.egg_info.run() File "/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 310, in run writer(self, ep.name, os.path.join(self.egg_info, ep.name)) File "/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 739, in write_requirements cmd.write_or_delete_file("requirements", filename, data.getvalue()) File "/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 272, in write_or_delete_file self.write_file(what, filename, data) File "/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 288, in write_file log.info("writing %s to %s", what, filename) Message: 'writing %s to %s' Arguments: ('requirements', 'DendroPy.egg-info/requires.txt') --- Logging error --- Traceback (most recent call last): File "/usr/lib64/python3.11/logging/__init__.py", line 1113, in emit stream.write(msg + self.terminator) ValueError: I/O operation on closed file. Call stack: File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 550, in main(sys.argv[1:]) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 532, in main generate_requires( File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 444, in generate_requires generate_run_requirements(backend, requirements, build_wheel=build_wheel, wheeldir=wheeldir) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 354, in generate_run_requirements generate_run_requirements_hook(backend, requirements) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 310, in generate_run_requirements_hook dir_basename = prepare_metadata('.') File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 380, in prepare_metadata_for_build_wheel self.run_setup() File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 488, in run_setup self).run_setup(setup_script=setup_script) File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 338, in run_setup exec(code, locals()) File "", line 159, in File "/usr/lib/python3.11/site-packages/setuptools/__init__.py", line 107, in setup return distutils.core.setup(**attrs) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/core.py", line 185, in setup return run_commands(dist) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/core.py", line 201, in run_commands dist.run_commands() File "/usr/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 969, in run_commands self.run_command(cmd) File "/usr/lib/python3.11/site-packages/setuptools/dist.py", line 1244, in run_command super().run_command(command) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 988, in run_command cmd_obj.run() File "/usr/lib/python3.11/site-packages/setuptools/command/dist_info.py", line 99, in run self.egg_info.run() File "/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 310, in run writer(self, ep.name, os.path.join(self.egg_info, ep.name)) File "/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 755, in write_toplevel_names cmd.write_file("top-level names", filename, '\n'.join(sorted(pkgs)) + '\n') File "/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 288, in write_file log.info("writing %s to %s", what, filename) Message: 'writing %s to %s' Arguments: ('top-level names', 'DendroPy.egg-info/top_level.txt') --- Logging error --- Traceback (most recent call last): File "/usr/lib64/python3.11/logging/__init__.py", line 1113, in emit stream.write(msg + self.terminator) ValueError: I/O operation on closed file. Call stack: File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 550, in main(sys.argv[1:]) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 532, in main generate_requires( File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 444, in generate_requires generate_run_requirements(backend, requirements, build_wheel=build_wheel, wheeldir=wheeldir) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 354, in generate_run_requirements generate_run_requirements_hook(backend, requirements) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 310, in generate_run_requirements_hook dir_basename = prepare_metadata('.') File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 380, in prepare_metadata_for_build_wheel self.run_setup() File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 488, in run_setup self).run_setup(setup_script=setup_script) File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 338, in run_setup exec(code, locals()) File "", line 159, in File "/usr/lib/python3.11/site-packages/setuptools/__init__.py", line 107, in setup return distutils.core.setup(**attrs) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/core.py", line 185, in setup return run_commands(dist) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/core.py", line 201, in run_commands dist.run_commands() File "/usr/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 969, in run_commands self.run_command(cmd) File "/usr/lib/python3.11/site-packages/setuptools/dist.py", line 1244, in run_command super().run_command(command) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 988, in run_command cmd_obj.run() File "/usr/lib/python3.11/site-packages/setuptools/command/dist_info.py", line 99, in run self.egg_info.run() File "/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 317, in run self.find_sources() File "/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 325, in find_sources mm.run() File "/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 572, in run self.write_manifest() # it must exist so it'll get in the list File "/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 597, in write_manifest self.execute(write_file, (self.manifest, files), msg) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/cmd.py", line 339, in execute util.execute(func, args, msg, dry_run=self.dry_run) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/util.py", line 335, in execute log.info(msg) Message: "writing manifest file 'DendroPy.egg-info/SOURCES.txt'" Arguments: () --- Logging error --- Traceback (most recent call last): File "/usr/lib64/python3.11/logging/__init__.py", line 1113, in emit stream.write(msg + self.terminator) ValueError: I/O operation on closed file. Call stack: File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 550, in main(sys.argv[1:]) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 532, in main generate_requires( File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 444, in generate_requires generate_run_requirements(backend, requirements, build_wheel=build_wheel, wheeldir=wheeldir) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 354, in generate_run_requirements generate_run_requirements_hook(backend, requirements) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 310, in generate_run_requirements_hook dir_basename = prepare_metadata('.') File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 380, in prepare_metadata_for_build_wheel self.run_setup() File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 488, in run_setup self).run_setup(setup_script=setup_script) File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 338, in run_setup exec(code, locals()) File "", line 159, in File "/usr/lib/python3.11/site-packages/setuptools/__init__.py", line 107, in setup return distutils.core.setup(**attrs) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/core.py", line 185, in setup return run_commands(dist) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/core.py", line 201, in run_commands dist.run_commands() File "/usr/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 969, in run_commands self.run_command(cmd) File "/usr/lib/python3.11/site-packages/setuptools/dist.py", line 1244, in run_command super().run_command(command) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 988, in run_command cmd_obj.run() File "/usr/lib/python3.11/site-packages/setuptools/command/dist_info.py", line 99, in run self.egg_info.run() File "/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 317, in run self.find_sources() File "/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 325, in find_sources mm.run() File "/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 573, in run self.add_defaults() File "/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 618, in add_defaults self.read_manifest() File "/usr/lib/python3.11/site-packages/setuptools/command/sdist.py", line 196, in read_manifest log.info("reading manifest file '%s'", self.manifest) Message: "reading manifest file '%s'" Arguments: ('DendroPy.egg-info/SOURCES.txt',) --- Logging error --- Traceback (most recent call last): File "/usr/lib64/python3.11/logging/__init__.py", line 1113, in emit stream.write(msg + self.terminator) ValueError: I/O operation on closed file. Call stack: File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 550, in main(sys.argv[1:]) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 532, in main generate_requires( File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 444, in generate_requires generate_run_requirements(backend, requirements, build_wheel=build_wheel, wheeldir=wheeldir) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 354, in generate_run_requirements generate_run_requirements_hook(backend, requirements) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 310, in generate_run_requirements_hook dir_basename = prepare_metadata('.') File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 380, in prepare_metadata_for_build_wheel self.run_setup() File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 488, in run_setup self).run_setup(setup_script=setup_script) File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 338, in run_setup exec(code, locals()) File "", line 159, in File "/usr/lib/python3.11/site-packages/setuptools/__init__.py", line 107, in setup return distutils.core.setup(**attrs) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/core.py", line 185, in setup return run_commands(dist) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/core.py", line 201, in run_commands dist.run_commands() File "/usr/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 969, in run_commands self.run_command(cmd) File "/usr/lib/python3.11/site-packages/setuptools/dist.py", line 1244, in run_command super().run_command(command) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 988, in run_command cmd_obj.run() File "/usr/lib/python3.11/site-packages/setuptools/command/dist_info.py", line 99, in run self.egg_info.run() File "/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 317, in run self.find_sources() File "/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 325, in find_sources mm.run() File "/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 575, in run self.read_template() File "/usr/lib/python3.11/site-packages/setuptools/_distutils/command/sdist.py", line 354, in read_template log.info("reading manifest template '%s'", self.template) Message: "reading manifest template '%s'" Arguments: ('MANIFEST.in',) warning: no files found matching 'doc/Makefile' warning: no files found matching '*' under directory 'doc/source' warning: no previously-included files matching '.DS_Store' found anywhere in distribution warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '.gitignore' found anywhere in distribution warning: no previously-included files matching '.gitattributes' found anywhere in distribution warning: no previously-included files matching '.idea' found anywhere in distribution warning: no previously-included files matching '__pycache__' found anywhere in distribution --- Logging error --- Traceback (most recent call last): File "/usr/lib64/python3.11/logging/__init__.py", line 1113, in emit stream.write(msg + self.terminator) ValueError: I/O operation on closed file. Call stack: File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 550, in main(sys.argv[1:]) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 532, in main generate_requires( File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 444, in generate_requires generate_run_requirements(backend, requirements, build_wheel=build_wheel, wheeldir=wheeldir) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 354, in generate_run_requirements generate_run_requirements_hook(backend, requirements) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 310, in generate_run_requirements_hook dir_basename = prepare_metadata('.') File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 380, in prepare_metadata_for_build_wheel self.run_setup() File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 488, in run_setup self).run_setup(setup_script=setup_script) File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 338, in run_setup exec(code, locals()) File "", line 159, in File "/usr/lib/python3.11/site-packages/setuptools/__init__.py", line 107, in setup return distutils.core.setup(**attrs) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/core.py", line 185, in setup return run_commands(dist) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/core.py", line 201, in run_commands dist.run_commands() File "/usr/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 969, in run_commands self.run_command(cmd) File "/usr/lib/python3.11/site-packages/setuptools/dist.py", line 1244, in run_command super().run_command(command) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 988, in run_command cmd_obj.run() File "/usr/lib/python3.11/site-packages/setuptools/command/dist_info.py", line 99, in run self.egg_info.run() File "/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 317, in run self.find_sources() File "/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 325, in find_sources mm.run() File "/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 576, in run self.add_license_files() File "/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 631, in add_license_files log.info("adding license file '%s'", lf) Message: "adding license file '%s'" Arguments: ('LICENSE.rst',) --- Logging error --- Traceback (most recent call last): File "/usr/lib64/python3.11/logging/__init__.py", line 1113, in emit stream.write(msg + self.terminator) ValueError: I/O operation on closed file. Call stack: File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 550, in main(sys.argv[1:]) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 532, in main generate_requires( File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 444, in generate_requires generate_run_requirements(backend, requirements, build_wheel=build_wheel, wheeldir=wheeldir) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 354, in generate_run_requirements generate_run_requirements_hook(backend, requirements) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 310, in generate_run_requirements_hook dir_basename = prepare_metadata('.') File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 380, in prepare_metadata_for_build_wheel self.run_setup() File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 488, in run_setup self).run_setup(setup_script=setup_script) File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 338, in run_setup exec(code, locals()) File "", line 159, in File "/usr/lib/python3.11/site-packages/setuptools/__init__.py", line 107, in setup return distutils.core.setup(**attrs) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/core.py", line 185, in setup return run_commands(dist) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/core.py", line 201, in run_commands dist.run_commands() File "/usr/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 969, in run_commands self.run_command(cmd) File "/usr/lib/python3.11/site-packages/setuptools/dist.py", line 1244, in run_command super().run_command(command) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 988, in run_command cmd_obj.run() File "/usr/lib/python3.11/site-packages/setuptools/command/dist_info.py", line 99, in run self.egg_info.run() File "/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 317, in run self.find_sources() File "/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 325, in find_sources mm.run() File "/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 576, in run self.add_license_files() File "/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 631, in add_license_files log.info("adding license file '%s'", lf) Message: "adding license file '%s'" Arguments: ('AUTHORS.rst',) --- Logging error --- Traceback (most recent call last): File "/usr/lib64/python3.11/logging/__init__.py", line 1113, in emit stream.write(msg + self.terminator) ValueError: I/O operation on closed file. Call stack: File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 550, in main(sys.argv[1:]) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 532, in main generate_requires( File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 444, in generate_requires generate_run_requirements(backend, requirements, build_wheel=build_wheel, wheeldir=wheeldir) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 354, in generate_run_requirements generate_run_requirements_hook(backend, requirements) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 310, in generate_run_requirements_hook dir_basename = prepare_metadata('.') File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 380, in prepare_metadata_for_build_wheel self.run_setup() File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 488, in run_setup self).run_setup(setup_script=setup_script) File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 338, in run_setup exec(code, locals()) File "", line 159, in File "/usr/lib/python3.11/site-packages/setuptools/__init__.py", line 107, in setup return distutils.core.setup(**attrs) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/core.py", line 185, in setup return run_commands(dist) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/core.py", line 201, in run_commands dist.run_commands() File "/usr/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 969, in run_commands self.run_command(cmd) File "/usr/lib/python3.11/site-packages/setuptools/dist.py", line 1244, in run_command super().run_command(command) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 988, in run_command cmd_obj.run() File "/usr/lib/python3.11/site-packages/setuptools/command/dist_info.py", line 99, in run self.egg_info.run() File "/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 317, in run self.find_sources() File "/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 325, in find_sources mm.run() File "/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 581, in run self.write_manifest() File "/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 597, in write_manifest self.execute(write_file, (self.manifest, files), msg) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/cmd.py", line 339, in execute util.execute(func, args, msg, dry_run=self.dry_run) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/util.py", line 335, in execute log.info(msg) Message: "writing manifest file 'DendroPy.egg-info/SOURCES.txt'" Arguments: () --- Logging error --- Traceback (most recent call last): File "/usr/lib64/python3.11/logging/__init__.py", line 1113, in emit stream.write(msg + self.terminator) ValueError: I/O operation on closed file. Call stack: File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 550, in main(sys.argv[1:]) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 532, in main generate_requires( File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 444, in generate_requires generate_run_requirements(backend, requirements, build_wheel=build_wheel, wheeldir=wheeldir) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 354, in generate_run_requirements generate_run_requirements_hook(backend, requirements) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 310, in generate_run_requirements_hook dir_basename = prepare_metadata('.') File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 380, in prepare_metadata_for_build_wheel self.run_setup() File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 488, in run_setup self).run_setup(setup_script=setup_script) File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 338, in run_setup exec(code, locals()) File "", line 159, in File "/usr/lib/python3.11/site-packages/setuptools/__init__.py", line 107, in setup return distutils.core.setup(**attrs) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/core.py", line 185, in setup return run_commands(dist) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/core.py", line 201, in run_commands dist.run_commands() File "/usr/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 969, in run_commands self.run_command(cmd) File "/usr/lib/python3.11/site-packages/setuptools/dist.py", line 1244, in run_command super().run_command(command) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 988, in run_command cmd_obj.run() File "/usr/lib/python3.11/site-packages/setuptools/command/dist_info.py", line 103, in run log.info("creating '{}'".format(os.path.abspath(self.dist_info_dir))) Message: "creating '/builddir/build/BUILD/DendroPy-4.6.0/DendroPy-4.6.0.dist-info'" Arguments: () Handling setuptools from hook generated metadata: Requires-Dist Requirement satisfied: setuptools (installed: setuptools 67.7.1) + rm -rfv DendroPy-4.6.0.dist-info/ removed 'DendroPy-4.6.0.dist-info/AUTHORS.rst' removed 'DendroPy-4.6.0.dist-info/LICENSE.rst' removed 'DendroPy-4.6.0.dist-info/METADATA' removed 'DendroPy-4.6.0.dist-info/zip-safe' removed 'DendroPy-4.6.0.dist-info/top_level.txt' removed directory 'DendroPy-4.6.0.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/python-dendropy-4.6.0-1.fc38.buildreqs.nosrc.rpm Child return code was: 11 Dynamic buildrequires detected Going to install missing buildrequires. See root.log for details. ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -ba --noprep --target x86_64 --nodeps /builddir/build/SPECS/python-dendropy.spec'], chrootPath='/var/lib/mock/fedora-38-x86_64-1682154481.458880/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.sf1qfxt2:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.sf1qfxt2:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '8f47f435679b41b5b5f7f257ac584b98', '-D', '/var/lib/mock/fedora-38-x86_64-1682154481.458880/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.sf1qfxt2:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -ba --noprep --target x86_64 --nodeps /builddir/build/SPECS/python-dendropy.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1682121600 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.fIHbM1 + umask 022 + cd /builddir/build/BUILD + cd DendroPy-4.6.0 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + '[' -f setup.py ']' + echo 'python3dist(setuptools) >= 40.8' + echo 'python3dist(wheel)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/DendroPy-4.6.0/.pyproject-builddir + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + TMPDIR=/builddir/build/BUILD/DendroPy-4.6.0/.pyproject-builddir + RPM_TOXENV=py311 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/DendroPy-4.6.0/pyproject-wheeldir Handling setuptools >= 40.8 from default build backend Requirement satisfied: setuptools >= 40.8 (installed: setuptools 67.7.1) Handling wheel from default build backend Requirement satisfied: wheel (installed: wheel 0.38.4) -setup.py: DendroPy version 4.6.0 -setup.py: using setuptools ('/usr/lib/python3.11/site-packages/setuptools/__init__.py') -setup.py: searching for packages -setup.py: packages identified: - dendropy - dendropy.utility - dendropy.simulate - dendropy.model - dendropy.mathlib - dendropy.legacy - dendropy.interop - dendropy.datamodel - dendropy.dataio - dendropy.calculate - dendropy.utility.libexec - dendropy.datamodel.treemodel -setup.py: scripts identified: - applications/sumtrees/sumtrees.py - applications/sumlabels/sumlabels.py - applications/dendropy-format/dendropy-format -setup.py: setuptools command extensions are available warning: no files found matching 'doc/Makefile' warning: no files found matching '*' under directory 'doc/source' warning: no previously-included files matching '.DS_Store' found anywhere in distribution warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '.gitignore' found anywhere in distribution warning: no previously-included files matching '.gitattributes' found anywhere in distribution warning: no previously-included files matching '.idea' found anywhere in distribution warning: no previously-included files matching '__pycache__' found anywhere in distribution HOOK STDOUT: running egg_info HOOK STDOUT: writing src/DendroPy.egg-info/PKG-INFO HOOK STDOUT: writing dependency_links to src/DendroPy.egg-info/dependency_links.txt HOOK STDOUT: writing requirements to src/DendroPy.egg-info/requires.txt HOOK STDOUT: writing top-level names to src/DendroPy.egg-info/top_level.txt HOOK STDOUT: reading manifest file 'src/DendroPy.egg-info/SOURCES.txt' HOOK STDOUT: reading manifest template 'MANIFEST.in' HOOK STDOUT: adding license file 'LICENSE.rst' HOOK STDOUT: adding license file 'AUTHORS.rst' HOOK STDOUT: writing manifest file 'src/DendroPy.egg-info/SOURCES.txt' Handling wheel from get_requires_for_build_wheel Requirement satisfied: wheel (installed: wheel 0.38.4) -setup.py: DendroPy version 4.6.0 -setup.py: using setuptools ('/usr/lib/python3.11/site-packages/setuptools/__init__.py') -setup.py: searching for packages -setup.py: packages identified: - dendropy - dendropy.utility - dendropy.simulate - dendropy.model - dendropy.mathlib - dendropy.legacy - dendropy.interop - dendropy.datamodel - dendropy.dataio - dendropy.calculate - dendropy.utility.libexec - dendropy.datamodel.treemodel -setup.py: scripts identified: - applications/sumtrees/sumtrees.py - applications/sumlabels/sumlabels.py - applications/dendropy-format/dendropy-format -setup.py: setuptools command extensions are available --- Logging error --- Traceback (most recent call last): File "/usr/lib64/python3.11/logging/__init__.py", line 1113, in emit stream.write(msg + self.terminator) ValueError: I/O operation on closed file. Call stack: File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 550, in main(sys.argv[1:]) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 532, in main generate_requires( File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 444, in generate_requires generate_run_requirements(backend, requirements, build_wheel=build_wheel, wheeldir=wheeldir) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 354, in generate_run_requirements generate_run_requirements_hook(backend, requirements) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 310, in generate_run_requirements_hook dir_basename = prepare_metadata('.') File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 380, in prepare_metadata_for_build_wheel self.run_setup() File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 488, in run_setup self).run_setup(setup_script=setup_script) File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 338, in run_setup exec(code, locals()) File "", line 159, in File "/usr/lib/python3.11/site-packages/setuptools/__init__.py", line 107, in setup return distutils.core.setup(**attrs) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/core.py", line 185, in setup return run_commands(dist) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/core.py", line 201, in run_commands dist.run_commands() File "/usr/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 969, in run_commands self.run_command(cmd) File "/usr/lib/python3.11/site-packages/setuptools/dist.py", line 1244, in run_command super().run_command(command) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 985, in run_command log.info("running %s", command) Message: 'running %s' Arguments: ('dist_info',) --- Logging error --- Traceback (most recent call last): File "/usr/lib64/python3.11/logging/__init__.py", line 1113, in emit stream.write(msg + self.terminator) ValueError: I/O operation on closed file. Call stack: File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 550, in main(sys.argv[1:]) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 532, in main generate_requires( File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 444, in generate_requires generate_run_requirements(backend, requirements, build_wheel=build_wheel, wheeldir=wheeldir) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 354, in generate_run_requirements generate_run_requirements_hook(backend, requirements) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 310, in generate_run_requirements_hook dir_basename = prepare_metadata('.') File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 380, in prepare_metadata_for_build_wheel self.run_setup() File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 488, in run_setup self).run_setup(setup_script=setup_script) File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 338, in run_setup exec(code, locals()) File "", line 159, in File "/usr/lib/python3.11/site-packages/setuptools/__init__.py", line 107, in setup return distutils.core.setup(**attrs) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/core.py", line 185, in setup return run_commands(dist) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/core.py", line 201, in run_commands dist.run_commands() File "/usr/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 969, in run_commands self.run_command(cmd) File "/usr/lib/python3.11/site-packages/setuptools/dist.py", line 1244, in run_command super().run_command(command) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 988, in run_command cmd_obj.run() File "/usr/lib/python3.11/site-packages/setuptools/command/dist_info.py", line 99, in run self.egg_info.run() File "/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 310, in run writer(self, ep.name, os.path.join(self.egg_info, ep.name)) File "/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 690, in write_pkg_info log.info("writing %s", filename) Message: 'writing %s' Arguments: ('DendroPy.egg-info/PKG-INFO',) --- Logging error --- Traceback (most recent call last): File "/usr/lib64/python3.11/logging/__init__.py", line 1113, in emit stream.write(msg + self.terminator) ValueError: I/O operation on closed file. Call stack: File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 550, in main(sys.argv[1:]) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 532, in main generate_requires( File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 444, in generate_requires generate_run_requirements(backend, requirements, build_wheel=build_wheel, wheeldir=wheeldir) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 354, in generate_run_requirements generate_run_requirements_hook(backend, requirements) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 310, in generate_run_requirements_hook dir_basename = prepare_metadata('.') File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 380, in prepare_metadata_for_build_wheel self.run_setup() File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 488, in run_setup self).run_setup(setup_script=setup_script) File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 338, in run_setup exec(code, locals()) File "", line 159, in File "/usr/lib/python3.11/site-packages/setuptools/__init__.py", line 107, in setup return distutils.core.setup(**attrs) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/core.py", line 185, in setup return run_commands(dist) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/core.py", line 201, in run_commands dist.run_commands() File "/usr/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 969, in run_commands self.run_command(cmd) File "/usr/lib/python3.11/site-packages/setuptools/dist.py", line 1244, in run_command super().run_command(command) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 988, in run_command cmd_obj.run() File "/usr/lib/python3.11/site-packages/setuptools/command/dist_info.py", line 99, in run self.egg_info.run() File "/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 310, in run writer(self, ep.name, os.path.join(self.egg_info, ep.name)) File "/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 759, in overwrite_arg write_arg(cmd, basename, filename, True) File "/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 767, in write_arg cmd.write_or_delete_file(argname, filename, value, force) File "/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 272, in write_or_delete_file self.write_file(what, filename, data) File "/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 288, in write_file log.info("writing %s to %s", what, filename) Message: 'writing %s to %s' Arguments: ('dependency_links', 'DendroPy.egg-info/dependency_links.txt') --- Logging error --- Traceback (most recent call last): File "/usr/lib64/python3.11/logging/__init__.py", line 1113, in emit stream.write(msg + self.terminator) ValueError: I/O operation on closed file. Call stack: File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 550, in main(sys.argv[1:]) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 532, in main generate_requires( File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 444, in generate_requires generate_run_requirements(backend, requirements, build_wheel=build_wheel, wheeldir=wheeldir) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 354, in generate_run_requirements generate_run_requirements_hook(backend, requirements) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 310, in generate_run_requirements_hook dir_basename = prepare_metadata('.') File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 380, in prepare_metadata_for_build_wheel self.run_setup() File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 488, in run_setup self).run_setup(setup_script=setup_script) File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 338, in run_setup exec(code, locals()) File "", line 159, in File "/usr/lib/python3.11/site-packages/setuptools/__init__.py", line 107, in setup return distutils.core.setup(**attrs) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/core.py", line 185, in setup return run_commands(dist) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/core.py", line 201, in run_commands dist.run_commands() File "/usr/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 969, in run_commands self.run_command(cmd) File "/usr/lib/python3.11/site-packages/setuptools/dist.py", line 1244, in run_command super().run_command(command) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 988, in run_command cmd_obj.run() File "/usr/lib/python3.11/site-packages/setuptools/command/dist_info.py", line 99, in run self.egg_info.run() File "/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 310, in run writer(self, ep.name, os.path.join(self.egg_info, ep.name)) File "/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 739, in write_requirements cmd.write_or_delete_file("requirements", filename, data.getvalue()) File "/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 272, in write_or_delete_file self.write_file(what, filename, data) File "/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 288, in write_file log.info("writing %s to %s", what, filename) Message: 'writing %s to %s' Arguments: ('requirements', 'DendroPy.egg-info/requires.txt') --- Logging error --- Traceback (most recent call last): File "/usr/lib64/python3.11/logging/__init__.py", line 1113, in emit stream.write(msg + self.terminator) ValueError: I/O operation on closed file. Call stack: File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 550, in main(sys.argv[1:]) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 532, in main generate_requires( File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 444, in generate_requires generate_run_requirements(backend, requirements, build_wheel=build_wheel, wheeldir=wheeldir) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 354, in generate_run_requirements generate_run_requirements_hook(backend, requirements) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 310, in generate_run_requirements_hook dir_basename = prepare_metadata('.') File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 380, in prepare_metadata_for_build_wheel self.run_setup() File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 488, in run_setup self).run_setup(setup_script=setup_script) File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 338, in run_setup exec(code, locals()) File "", line 159, in File "/usr/lib/python3.11/site-packages/setuptools/__init__.py", line 107, in setup return distutils.core.setup(**attrs) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/core.py", line 185, in setup return run_commands(dist) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/core.py", line 201, in run_commands dist.run_commands() File "/usr/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 969, in run_commands self.run_command(cmd) File "/usr/lib/python3.11/site-packages/setuptools/dist.py", line 1244, in run_command super().run_command(command) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 988, in run_command cmd_obj.run() File "/usr/lib/python3.11/site-packages/setuptools/command/dist_info.py", line 99, in run self.egg_info.run() File "/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 310, in run writer(self, ep.name, os.path.join(self.egg_info, ep.name)) File "/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 755, in write_toplevel_names cmd.write_file("top-level names", filename, '\n'.join(sorted(pkgs)) + '\n') File "/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 288, in write_file log.info("writing %s to %s", what, filename) Message: 'writing %s to %s' Arguments: ('top-level names', 'DendroPy.egg-info/top_level.txt') --- Logging error --- Traceback (most recent call last): File "/usr/lib64/python3.11/logging/__init__.py", line 1113, in emit stream.write(msg + self.terminator) ValueError: I/O operation on closed file. Call stack: File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 550, in main(sys.argv[1:]) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 532, in main generate_requires( File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 444, in generate_requires generate_run_requirements(backend, requirements, build_wheel=build_wheel, wheeldir=wheeldir) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 354, in generate_run_requirements generate_run_requirements_hook(backend, requirements) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 310, in generate_run_requirements_hook dir_basename = prepare_metadata('.') File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 380, in prepare_metadata_for_build_wheel self.run_setup() File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 488, in run_setup self).run_setup(setup_script=setup_script) File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 338, in run_setup exec(code, locals()) File "", line 159, in File "/usr/lib/python3.11/site-packages/setuptools/__init__.py", line 107, in setup return distutils.core.setup(**attrs) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/core.py", line 185, in setup return run_commands(dist) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/core.py", line 201, in run_commands dist.run_commands() File "/usr/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 969, in run_commands self.run_command(cmd) File "/usr/lib/python3.11/site-packages/setuptools/dist.py", line 1244, in run_command super().run_command(command) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 988, in run_command cmd_obj.run() File "/usr/lib/python3.11/site-packages/setuptools/command/dist_info.py", line 99, in run self.egg_info.run() File "/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 317, in run self.find_sources() File "/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 325, in find_sources mm.run() File "/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 573, in run self.add_defaults() File "/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 618, in add_defaults self.read_manifest() File "/usr/lib/python3.11/site-packages/setuptools/command/sdist.py", line 196, in read_manifest log.info("reading manifest file '%s'", self.manifest) Message: "reading manifest file '%s'" Arguments: ('DendroPy.egg-info/SOURCES.txt',) --- Logging error --- Traceback (most recent call last): File "/usr/lib64/python3.11/logging/__init__.py", line 1113, in emit stream.write(msg + self.terminator) ValueError: I/O operation on closed file. Call stack: File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 550, in main(sys.argv[1:]) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 532, in main generate_requires( File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 444, in generate_requires generate_run_requirements(backend, requirements, build_wheel=build_wheel, wheeldir=wheeldir) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 354, in generate_run_requirements generate_run_requirements_hook(backend, requirements) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 310, in generate_run_requirements_hook dir_basename = prepare_metadata('.') File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 380, in prepare_metadata_for_build_wheel self.run_setup() File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 488, in run_setup self).run_setup(setup_script=setup_script) File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 338, in run_setup exec(code, locals()) File "", line 159, in File "/usr/lib/python3.11/site-packages/setuptools/__init__.py", line 107, in setup return distutils.core.setup(**attrs) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/core.py", line 185, in setup return run_commands(dist) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/core.py", line 201, in run_commands dist.run_commands() File "/usr/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 969, in run_commands self.run_command(cmd) File "/usr/lib/python3.11/site-packages/setuptools/dist.py", line 1244, in run_command super().run_command(command) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 988, in run_command cmd_obj.run() File "/usr/lib/python3.11/site-packages/setuptools/command/dist_info.py", line 99, in run self.egg_info.run() File "/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 317, in run self.find_sources() File "/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 325, in find_sources mm.run() File "/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 575, in run self.read_template() File "/usr/lib/python3.11/site-packages/setuptools/_distutils/command/sdist.py", line 354, in read_template log.info("reading manifest template '%s'", self.template) Message: "reading manifest template '%s'" Arguments: ('MANIFEST.in',) warning: no files found matching 'doc/Makefile' warning: no files found matching '*' under directory 'doc/source' warning: no previously-included files matching '.DS_Store' found anywhere in distribution warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '.gitignore' found anywhere in distribution warning: no previously-included files matching '.gitattributes' found anywhere in distribution warning: no previously-included files matching '.idea' found anywhere in distribution warning: no previously-included files matching '__pycache__' found anywhere in distribution --- Logging error --- Traceback (most recent call last): File "/usr/lib64/python3.11/logging/__init__.py", line 1113, in emit stream.write(msg + self.terminator) ValueError: I/O operation on closed file. Call stack: File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 550, in main(sys.argv[1:]) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 532, in main generate_requires( File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 444, in generate_requires generate_run_requirements(backend, requirements, build_wheel=build_wheel, wheeldir=wheeldir) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 354, in generate_run_requirements generate_run_requirements_hook(backend, requirements) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 310, in generate_run_requirements_hook dir_basename = prepare_metadata('.') File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 380, in prepare_metadata_for_build_wheel self.run_setup() File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 488, in run_setup self).run_setup(setup_script=setup_script) File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 338, in run_setup exec(code, locals()) File "", line 159, in File "/usr/lib/python3.11/site-packages/setuptools/__init__.py", line 107, in setup return distutils.core.setup(**attrs) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/core.py", line 185, in setup return run_commands(dist) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/core.py", line 201, in run_commands dist.run_commands() File "/usr/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 969, in run_commands self.run_command(cmd) File "/usr/lib/python3.11/site-packages/setuptools/dist.py", line 1244, in run_command super().run_command(command) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 988, in run_command cmd_obj.run() File "/usr/lib/python3.11/site-packages/setuptools/command/dist_info.py", line 99, in run self.egg_info.run() File "/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 317, in run self.find_sources() File "/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 325, in find_sources mm.run() File "/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 576, in run self.add_license_files() File "/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 631, in add_license_files log.info("adding license file '%s'", lf) Message: "adding license file '%s'" Arguments: ('LICENSE.rst',) --- Logging error --- Traceback (most recent call last): File "/usr/lib64/python3.11/logging/__init__.py", line 1113, in emit stream.write(msg + self.terminator) ValueError: I/O operation on closed file. Call stack: File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 550, in main(sys.argv[1:]) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 532, in main generate_requires( File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 444, in generate_requires generate_run_requirements(backend, requirements, build_wheel=build_wheel, wheeldir=wheeldir) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 354, in generate_run_requirements generate_run_requirements_hook(backend, requirements) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 310, in generate_run_requirements_hook dir_basename = prepare_metadata('.') File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 380, in prepare_metadata_for_build_wheel self.run_setup() File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 488, in run_setup self).run_setup(setup_script=setup_script) File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 338, in run_setup exec(code, locals()) File "", line 159, in File "/usr/lib/python3.11/site-packages/setuptools/__init__.py", line 107, in setup return distutils.core.setup(**attrs) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/core.py", line 185, in setup return run_commands(dist) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/core.py", line 201, in run_commands dist.run_commands() File "/usr/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 969, in run_commands self.run_command(cmd) File "/usr/lib/python3.11/site-packages/setuptools/dist.py", line 1244, in run_command super().run_command(command) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 988, in run_command cmd_obj.run() File "/usr/lib/python3.11/site-packages/setuptools/command/dist_info.py", line 99, in run self.egg_info.run() File "/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 317, in run self.find_sources() File "/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 325, in find_sources mm.run() File "/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 576, in run self.add_license_files() File "/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 631, in add_license_files log.info("adding license file '%s'", lf) Message: "adding license file '%s'" Arguments: ('AUTHORS.rst',) --- Logging error --- Traceback (most recent call last): File "/usr/lib64/python3.11/logging/__init__.py", line 1113, in emit stream.write(msg + self.terminator) ValueError: I/O operation on closed file. Call stack: File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 550, in main(sys.argv[1:]) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 532, in main generate_requires( File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 444, in generate_requires generate_run_requirements(backend, requirements, build_wheel=build_wheel, wheeldir=wheeldir) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 354, in generate_run_requirements generate_run_requirements_hook(backend, requirements) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 310, in generate_run_requirements_hook dir_basename = prepare_metadata('.') File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 380, in prepare_metadata_for_build_wheel self.run_setup() File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 488, in run_setup self).run_setup(setup_script=setup_script) File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 338, in run_setup exec(code, locals()) File "", line 159, in File "/usr/lib/python3.11/site-packages/setuptools/__init__.py", line 107, in setup return distutils.core.setup(**attrs) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/core.py", line 185, in setup return run_commands(dist) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/core.py", line 201, in run_commands dist.run_commands() File "/usr/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 969, in run_commands self.run_command(cmd) File "/usr/lib/python3.11/site-packages/setuptools/dist.py", line 1244, in run_command super().run_command(command) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 988, in run_command cmd_obj.run() File "/usr/lib/python3.11/site-packages/setuptools/command/dist_info.py", line 99, in run self.egg_info.run() File "/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 317, in run self.find_sources() File "/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 325, in find_sources mm.run() File "/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 581, in run self.write_manifest() File "/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 597, in write_manifest self.execute(write_file, (self.manifest, files), msg) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/cmd.py", line 339, in execute util.execute(func, args, msg, dry_run=self.dry_run) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/util.py", line 335, in execute log.info(msg) Message: "writing manifest file 'DendroPy.egg-info/SOURCES.txt'" Arguments: () --- Logging error --- Traceback (most recent call last): File "/usr/lib64/python3.11/logging/__init__.py", line 1113, in emit stream.write(msg + self.terminator) ValueError: I/O operation on closed file. Call stack: File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 550, in main(sys.argv[1:]) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 532, in main generate_requires( File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 444, in generate_requires generate_run_requirements(backend, requirements, build_wheel=build_wheel, wheeldir=wheeldir) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 354, in generate_run_requirements generate_run_requirements_hook(backend, requirements) File "/usr/lib/rpm/redhat/pyproject_buildrequires.py", line 310, in generate_run_requirements_hook dir_basename = prepare_metadata('.') File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 380, in prepare_metadata_for_build_wheel self.run_setup() File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 488, in run_setup self).run_setup(setup_script=setup_script) File "/usr/lib/python3.11/site-packages/setuptools/build_meta.py", line 338, in run_setup exec(code, locals()) File "", line 159, in File "/usr/lib/python3.11/site-packages/setuptools/__init__.py", line 107, in setup return distutils.core.setup(**attrs) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/core.py", line 185, in setup return run_commands(dist) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/core.py", line 201, in run_commands dist.run_commands() File "/usr/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 969, in run_commands self.run_command(cmd) File "/usr/lib/python3.11/site-packages/setuptools/dist.py", line 1244, in run_command super().run_command(command) File "/usr/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 988, in run_command cmd_obj.run() File "/usr/lib/python3.11/site-packages/setuptools/command/dist_info.py", line 103, in run log.info("creating '{}'".format(os.path.abspath(self.dist_info_dir))) Message: "creating '/builddir/build/BUILD/DendroPy-4.6.0/DendroPy-4.6.0.dist-info'" Arguments: () Handling setuptools from hook generated metadata: Requires-Dist Requirement satisfied: setuptools (installed: setuptools 67.7.1) + rm -rfv DendroPy-4.6.0.dist-info/ removed 'DendroPy-4.6.0.dist-info/AUTHORS.rst' removed 'DendroPy-4.6.0.dist-info/LICENSE.rst' removed 'DendroPy-4.6.0.dist-info/METADATA' removed 'DendroPy-4.6.0.dist-info/top_level.txt' removed 'DendroPy-4.6.0.dist-info/zip-safe' removed directory 'DendroPy-4.6.0.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.CQL5XX + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd DendroPy-4.6.0 + mkdir -p /builddir/build/BUILD/DendroPy-4.6.0/.pyproject-builddir + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + TMPDIR=/builddir/build/BUILD/DendroPy-4.6.0/.pyproject-builddir + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_wheel.py /builddir/build/BUILD/DendroPy-4.6.0/pyproject-wheeldir Processing /builddir/build/BUILD/DendroPy-4.6.0 Preparing metadata (pyproject.toml): started Running command Preparing metadata (pyproject.toml) -setup.py: DendroPy version 4.6.0 -setup.py: using setuptools ('/usr/lib/python3.11/site-packages/setuptools/__init__.py') -setup.py: searching for packages -setup.py: packages identified: - dendropy - dendropy.utility - dendropy.simulate - dendropy.model - dendropy.mathlib - dendropy.legacy - dendropy.interop - dendropy.datamodel - dendropy.dataio - dendropy.calculate - dendropy.utility.libexec - dendropy.datamodel.treemodel -setup.py: scripts identified: - applications/sumtrees/sumtrees.py - applications/sumlabels/sumlabels.py - applications/dendropy-format/dendropy-format -setup.py: setuptools command extensions are available running dist_info creating /builddir/build/BUILD/DendroPy-4.6.0/.pyproject-builddir/pip-modern-metadata-b061ui1j/DendroPy.egg-info writing /builddir/build/BUILD/DendroPy-4.6.0/.pyproject-builddir/pip-modern-metadata-b061ui1j/DendroPy.egg-info/PKG-INFO writing dependency_links to /builddir/build/BUILD/DendroPy-4.6.0/.pyproject-builddir/pip-modern-metadata-b061ui1j/DendroPy.egg-info/dependency_links.txt writing requirements to /builddir/build/BUILD/DendroPy-4.6.0/.pyproject-builddir/pip-modern-metadata-b061ui1j/DendroPy.egg-info/requires.txt writing top-level names to /builddir/build/BUILD/DendroPy-4.6.0/.pyproject-builddir/pip-modern-metadata-b061ui1j/DendroPy.egg-info/top_level.txt writing manifest file '/builddir/build/BUILD/DendroPy-4.6.0/.pyproject-builddir/pip-modern-metadata-b061ui1j/DendroPy.egg-info/SOURCES.txt' reading manifest file '/builddir/build/BUILD/DendroPy-4.6.0/.pyproject-builddir/pip-modern-metadata-b061ui1j/DendroPy.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'doc/Makefile' warning: no files found matching '*' under directory 'doc/source' warning: no previously-included files matching '.DS_Store' found anywhere in distribution warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '.gitignore' found anywhere in distribution warning: no previously-included files matching '.gitattributes' found anywhere in distribution warning: no previously-included files matching '.idea' found anywhere in distribution warning: no previously-included files matching '__pycache__' found anywhere in distribution adding license file 'LICENSE.rst' adding license file 'AUTHORS.rst' writing manifest file '/builddir/build/BUILD/DendroPy-4.6.0/.pyproject-builddir/pip-modern-metadata-b061ui1j/DendroPy.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/DendroPy-4.6.0/.pyproject-builddir/pip-modern-metadata-b061ui1j/DendroPy-4.6.0.dist-info' Preparing metadata (pyproject.toml): finished with status 'done' Building wheels for collected packages: DendroPy Building wheel for DendroPy (pyproject.toml): started Running command Building wheel for DendroPy (pyproject.toml) -setup.py: DendroPy version 4.6.0 -setup.py: using setuptools ('/usr/lib/python3.11/site-packages/setuptools/__init__.py') -setup.py: searching for packages -setup.py: packages identified: - dendropy - dendropy.utility - dendropy.simulate - dendropy.model - dendropy.mathlib - dendropy.legacy - dendropy.interop - dendropy.datamodel - dendropy.dataio - dendropy.calculate - dendropy.utility.libexec - dendropy.datamodel.treemodel -setup.py: scripts identified: - applications/sumtrees/sumtrees.py - applications/sumlabels/sumlabels.py - applications/dendropy-format/dendropy-format -setup.py: setuptools command extensions are available running bdist_wheel running build running build_py creating build creating build/lib creating build/lib/dendropy copying src/dendropy/__main__.py -> build/lib/dendropy copying src/dendropy/__init__.py -> build/lib/dendropy creating build/lib/dendropy/utility copying src/dendropy/utility/vcsinfo.py -> build/lib/dendropy/utility copying src/dendropy/utility/urlio.py -> build/lib/dendropy/utility copying src/dendropy/utility/timeprocessing.py -> build/lib/dendropy/utility copying src/dendropy/utility/textprocessing.py -> build/lib/dendropy/utility copying src/dendropy/utility/terminal.py -> build/lib/dendropy/utility copying src/dendropy/utility/processio.py -> build/lib/dendropy/utility copying src/dendropy/utility/metavar.py -> build/lib/dendropy/utility copying src/dendropy/utility/messaging.py -> build/lib/dendropy/utility copying src/dendropy/utility/filesys.py -> build/lib/dendropy/utility copying src/dendropy/utility/error.py -> build/lib/dendropy/utility copying src/dendropy/utility/deprecate.py -> build/lib/dendropy/utility copying src/dendropy/utility/debug.py -> build/lib/dendropy/utility copying src/dendropy/utility/container.py -> build/lib/dendropy/utility copying src/dendropy/utility/constants.py -> build/lib/dendropy/utility copying src/dendropy/utility/cli.py -> build/lib/dendropy/utility copying src/dendropy/utility/bitprocessing.py -> build/lib/dendropy/utility copying src/dendropy/utility/bibtex.py -> build/lib/dendropy/utility copying src/dendropy/utility/__init__.py -> build/lib/dendropy/utility creating build/lib/dendropy/simulate copying src/dendropy/simulate/treesim.py -> build/lib/dendropy/simulate copying src/dendropy/simulate/popgensim.py -> build/lib/dendropy/simulate copying src/dendropy/simulate/charsim.py -> build/lib/dendropy/simulate copying src/dendropy/simulate/__init__.py -> build/lib/dendropy/simulate creating build/lib/dendropy/model copying src/dendropy/model/treeshape.py -> build/lib/dendropy/model copying src/dendropy/model/reconcile.py -> build/lib/dendropy/model copying src/dendropy/model/protractedspeciation.py -> build/lib/dendropy/model copying src/dendropy/model/parsimony.py -> build/lib/dendropy/model copying src/dendropy/model/multispeciescoalescent.py -> build/lib/dendropy/model copying src/dendropy/model/discrete.py -> build/lib/dendropy/model copying src/dendropy/model/continuous.py -> build/lib/dendropy/model copying src/dendropy/model/coalescent.py -> build/lib/dendropy/model copying src/dendropy/model/birthdeath.py -> build/lib/dendropy/model copying src/dendropy/model/__init__.py -> build/lib/dendropy/model creating build/lib/dendropy/mathlib copying src/dendropy/mathlib/statistics.py -> build/lib/dendropy/mathlib copying src/dendropy/mathlib/probability.py -> build/lib/dendropy/mathlib copying src/dendropy/mathlib/mathfn.py -> build/lib/dendropy/mathlib copying src/dendropy/mathlib/__init__.py -> build/lib/dendropy/mathlib creating build/lib/dendropy/legacy copying src/dendropy/legacy/treesum.py -> build/lib/dendropy/legacy copying src/dendropy/legacy/treesplit.py -> build/lib/dendropy/legacy copying src/dendropy/legacy/treesim.py -> build/lib/dendropy/legacy copying src/dendropy/legacy/treemanip.py -> build/lib/dendropy/legacy copying src/dendropy/legacy/treecalc.py -> build/lib/dendropy/legacy copying src/dendropy/legacy/seqsim.py -> build/lib/dendropy/legacy copying src/dendropy/legacy/seqmodel.py -> build/lib/dendropy/legacy copying src/dendropy/legacy/reconcile.py -> build/lib/dendropy/legacy copying src/dendropy/legacy/popgenstat.py -> build/lib/dendropy/legacy copying src/dendropy/legacy/popgensim.py -> build/lib/dendropy/legacy copying src/dendropy/legacy/ncbi.py -> build/lib/dendropy/legacy copying src/dendropy/legacy/continuous.py -> build/lib/dendropy/legacy copying src/dendropy/legacy/coalescent.py -> build/lib/dendropy/legacy copying src/dendropy/legacy/__init__.py -> build/lib/dendropy/legacy creating build/lib/dendropy/interop copying src/dendropy/interop/seqgen.py -> build/lib/dendropy/interop copying src/dendropy/interop/rstats.py -> build/lib/dendropy/interop copying src/dendropy/interop/rspr.py -> build/lib/dendropy/interop copying src/dendropy/interop/raxml.py -> build/lib/dendropy/interop copying src/dendropy/interop/paup.py -> build/lib/dendropy/interop copying src/dendropy/interop/muscle.py -> build/lib/dendropy/interop copying src/dendropy/interop/itol.py -> build/lib/dendropy/interop copying src/dendropy/interop/genbank.py -> build/lib/dendropy/interop copying src/dendropy/interop/gbif.py -> build/lib/dendropy/interop copying src/dendropy/interop/ete.py -> build/lib/dendropy/interop copying src/dendropy/interop/entrez.py -> build/lib/dendropy/interop copying src/dendropy/interop/biopython.py -> build/lib/dendropy/interop copying src/dendropy/interop/ape.py -> build/lib/dendropy/interop copying src/dendropy/interop/__init__.py -> build/lib/dendropy/interop creating build/lib/dendropy/datamodel copying src/dendropy/datamodel/treecollectionmodel.py -> build/lib/dendropy/datamodel copying src/dendropy/datamodel/taxonmodel.py -> build/lib/dendropy/datamodel copying src/dendropy/datamodel/datasetmodel.py -> build/lib/dendropy/datamodel copying src/dendropy/datamodel/charstatemodel.py -> build/lib/dendropy/datamodel copying src/dendropy/datamodel/charmatrixmodel.py -> build/lib/dendropy/datamodel copying src/dendropy/datamodel/basemodel.py -> build/lib/dendropy/datamodel copying src/dendropy/datamodel/__init__.py -> build/lib/dendropy/datamodel creating build/lib/dendropy/dataio copying src/dendropy/dataio/xmlprocessing.py -> build/lib/dendropy/dataio copying src/dendropy/dataio/tokenizer.py -> build/lib/dendropy/dataio copying src/dendropy/dataio/phylipwriter.py -> build/lib/dendropy/dataio copying src/dendropy/dataio/phylipreader.py -> build/lib/dendropy/dataio copying src/dendropy/dataio/nexusyielder.py -> build/lib/dendropy/dataio copying src/dendropy/dataio/nexuswriter.py -> build/lib/dendropy/dataio copying src/dendropy/dataio/nexusreader.py -> build/lib/dendropy/dataio copying src/dendropy/dataio/nexusprocessing.py -> build/lib/dendropy/dataio copying src/dendropy/dataio/nexmlyielder.py -> build/lib/dendropy/dataio copying src/dendropy/dataio/nexmlwriter.py -> build/lib/dendropy/dataio copying src/dendropy/dataio/nexmlreader.py -> build/lib/dendropy/dataio copying src/dendropy/dataio/newickyielder.py -> build/lib/dendropy/dataio copying src/dendropy/dataio/newickwriter.py -> build/lib/dendropy/dataio copying src/dendropy/dataio/newickreader.py -> build/lib/dendropy/dataio copying src/dendropy/dataio/newick.py -> build/lib/dendropy/dataio copying src/dendropy/dataio/multiphylipreader.py -> build/lib/dendropy/dataio copying src/dendropy/dataio/ioservice.py -> build/lib/dendropy/dataio copying src/dendropy/dataio/fastawriter.py -> build/lib/dendropy/dataio copying src/dendropy/dataio/fastareader.py -> build/lib/dendropy/dataio copying src/dendropy/dataio/__init__.py -> build/lib/dendropy/dataio creating build/lib/dendropy/calculate copying src/dendropy/calculate/treesum.py -> build/lib/dendropy/calculate copying src/dendropy/calculate/treescore.py -> build/lib/dendropy/calculate copying src/dendropy/calculate/treemeasure.py -> build/lib/dendropy/calculate copying src/dendropy/calculate/treecompare.py -> build/lib/dendropy/calculate copying src/dendropy/calculate/statistics.py -> build/lib/dendropy/calculate copying src/dendropy/calculate/profiledistance.py -> build/lib/dendropy/calculate copying src/dendropy/calculate/probability.py -> build/lib/dendropy/calculate copying src/dendropy/calculate/popgenstat.py -> build/lib/dendropy/calculate copying src/dendropy/calculate/phylogeneticdistance.py -> build/lib/dendropy/calculate copying src/dendropy/calculate/mathfn.py -> build/lib/dendropy/calculate copying src/dendropy/calculate/combinatorics.py -> build/lib/dendropy/calculate copying src/dendropy/calculate/__init__.py -> build/lib/dendropy/calculate creating build/lib/dendropy/utility/libexec copying src/dendropy/utility/libexec/__init__.py -> build/lib/dendropy/utility/libexec creating build/lib/dendropy/datamodel/treemodel copying src/dendropy/datamodel/treemodel/_tree.py -> build/lib/dendropy/datamodel/treemodel copying src/dendropy/datamodel/treemodel/_node.py -> build/lib/dendropy/datamodel/treemodel copying src/dendropy/datamodel/treemodel/_edge.py -> build/lib/dendropy/datamodel/treemodel copying src/dendropy/datamodel/treemodel/_bipartition.py -> build/lib/dendropy/datamodel/treemodel copying src/dendropy/datamodel/treemodel/__init__.py -> build/lib/dendropy/datamodel/treemodel running egg_info writing src/DendroPy.egg-info/PKG-INFO writing dependency_links to src/DendroPy.egg-info/dependency_links.txt writing requirements to src/DendroPy.egg-info/requires.txt writing top-level names to src/DendroPy.egg-info/top_level.txt reading manifest file 'src/DendroPy.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'doc/Makefile' warning: no files found matching '*' under directory 'doc/source' warning: no previously-included files matching '.DS_Store' found anywhere in distribution warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '.gitignore' found anywhere in distribution warning: no previously-included files matching '.gitattributes' found anywhere in distribution warning: no previously-included files matching '.idea' found anywhere in distribution warning: no previously-included files matching '__pycache__' found anywhere in distribution adding license file 'LICENSE.rst' adding license file 'AUTHORS.rst' writing manifest file 'src/DendroPy.egg-info/SOURCES.txt' running build_scripts creating build/scripts-3.11 copying and adjusting applications/sumtrees/sumtrees.py -> build/scripts-3.11 copying and adjusting applications/sumlabels/sumlabels.py -> build/scripts-3.11 copying and adjusting applications/dendropy-format/dendropy-format -> build/scripts-3.11 changing mode of build/scripts-3.11/sumtrees.py from 644 to 755 changing mode of build/scripts-3.11/sumlabels.py from 644 to 755 changing mode of build/scripts-3.11/dendropy-format from 644 to 755 installing to build/bdist.linux-x86_64/wheel running install running install_lib creating build/bdist.linux-x86_64 creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/dendropy creating build/bdist.linux-x86_64/wheel/dendropy/calculate copying build/lib/dendropy/calculate/__init__.py -> build/bdist.linux-x86_64/wheel/dendropy/calculate copying build/lib/dendropy/calculate/combinatorics.py -> build/bdist.linux-x86_64/wheel/dendropy/calculate copying build/lib/dendropy/calculate/mathfn.py -> build/bdist.linux-x86_64/wheel/dendropy/calculate copying build/lib/dendropy/calculate/phylogeneticdistance.py -> build/bdist.linux-x86_64/wheel/dendropy/calculate copying build/lib/dendropy/calculate/popgenstat.py -> build/bdist.linux-x86_64/wheel/dendropy/calculate copying build/lib/dendropy/calculate/probability.py -> build/bdist.linux-x86_64/wheel/dendropy/calculate copying build/lib/dendropy/calculate/profiledistance.py -> build/bdist.linux-x86_64/wheel/dendropy/calculate copying build/lib/dendropy/calculate/statistics.py -> build/bdist.linux-x86_64/wheel/dendropy/calculate copying build/lib/dendropy/calculate/treecompare.py -> build/bdist.linux-x86_64/wheel/dendropy/calculate copying build/lib/dendropy/calculate/treemeasure.py -> build/bdist.linux-x86_64/wheel/dendropy/calculate copying build/lib/dendropy/calculate/treescore.py -> build/bdist.linux-x86_64/wheel/dendropy/calculate copying build/lib/dendropy/calculate/treesum.py -> build/bdist.linux-x86_64/wheel/dendropy/calculate creating build/bdist.linux-x86_64/wheel/dendropy/dataio copying build/lib/dendropy/dataio/__init__.py -> build/bdist.linux-x86_64/wheel/dendropy/dataio copying build/lib/dendropy/dataio/fastareader.py -> build/bdist.linux-x86_64/wheel/dendropy/dataio copying build/lib/dendropy/dataio/fastawriter.py -> build/bdist.linux-x86_64/wheel/dendropy/dataio copying build/lib/dendropy/dataio/ioservice.py -> build/bdist.linux-x86_64/wheel/dendropy/dataio copying build/lib/dendropy/dataio/multiphylipreader.py -> build/bdist.linux-x86_64/wheel/dendropy/dataio copying build/lib/dendropy/dataio/newick.py -> build/bdist.linux-x86_64/wheel/dendropy/dataio copying build/lib/dendropy/dataio/newickreader.py -> build/bdist.linux-x86_64/wheel/dendropy/dataio copying build/lib/dendropy/dataio/newickwriter.py -> build/bdist.linux-x86_64/wheel/dendropy/dataio copying build/lib/dendropy/dataio/newickyielder.py -> build/bdist.linux-x86_64/wheel/dendropy/dataio copying build/lib/dendropy/dataio/nexmlreader.py -> build/bdist.linux-x86_64/wheel/dendropy/dataio copying build/lib/dendropy/dataio/nexmlwriter.py -> build/bdist.linux-x86_64/wheel/dendropy/dataio copying build/lib/dendropy/dataio/nexmlyielder.py -> build/bdist.linux-x86_64/wheel/dendropy/dataio copying build/lib/dendropy/dataio/nexusprocessing.py -> build/bdist.linux-x86_64/wheel/dendropy/dataio copying build/lib/dendropy/dataio/nexusreader.py -> build/bdist.linux-x86_64/wheel/dendropy/dataio copying build/lib/dendropy/dataio/nexuswriter.py -> build/bdist.linux-x86_64/wheel/dendropy/dataio copying build/lib/dendropy/dataio/nexusyielder.py -> build/bdist.linux-x86_64/wheel/dendropy/dataio copying build/lib/dendropy/dataio/phylipreader.py -> build/bdist.linux-x86_64/wheel/dendropy/dataio copying build/lib/dendropy/dataio/phylipwriter.py -> build/bdist.linux-x86_64/wheel/dendropy/dataio copying build/lib/dendropy/dataio/tokenizer.py -> build/bdist.linux-x86_64/wheel/dendropy/dataio copying build/lib/dendropy/dataio/xmlprocessing.py -> build/bdist.linux-x86_64/wheel/dendropy/dataio creating build/bdist.linux-x86_64/wheel/dendropy/datamodel creating build/bdist.linux-x86_64/wheel/dendropy/datamodel/treemodel copying build/lib/dendropy/datamodel/treemodel/__init__.py -> build/bdist.linux-x86_64/wheel/dendropy/datamodel/treemodel copying build/lib/dendropy/datamodel/treemodel/_bipartition.py -> build/bdist.linux-x86_64/wheel/dendropy/datamodel/treemodel copying build/lib/dendropy/datamodel/treemodel/_edge.py -> build/bdist.linux-x86_64/wheel/dendropy/datamodel/treemodel copying build/lib/dendropy/datamodel/treemodel/_node.py -> build/bdist.linux-x86_64/wheel/dendropy/datamodel/treemodel copying build/lib/dendropy/datamodel/treemodel/_tree.py -> build/bdist.linux-x86_64/wheel/dendropy/datamodel/treemodel copying build/lib/dendropy/datamodel/__init__.py -> build/bdist.linux-x86_64/wheel/dendropy/datamodel copying build/lib/dendropy/datamodel/basemodel.py -> build/bdist.linux-x86_64/wheel/dendropy/datamodel copying build/lib/dendropy/datamodel/charmatrixmodel.py -> build/bdist.linux-x86_64/wheel/dendropy/datamodel copying build/lib/dendropy/datamodel/charstatemodel.py -> build/bdist.linux-x86_64/wheel/dendropy/datamodel copying build/lib/dendropy/datamodel/datasetmodel.py -> build/bdist.linux-x86_64/wheel/dendropy/datamodel copying build/lib/dendropy/datamodel/taxonmodel.py -> build/bdist.linux-x86_64/wheel/dendropy/datamodel copying build/lib/dendropy/datamodel/treecollectionmodel.py -> build/bdist.linux-x86_64/wheel/dendropy/datamodel creating build/bdist.linux-x86_64/wheel/dendropy/interop copying build/lib/dendropy/interop/__init__.py -> build/bdist.linux-x86_64/wheel/dendropy/interop copying build/lib/dendropy/interop/ape.py -> build/bdist.linux-x86_64/wheel/dendropy/interop copying build/lib/dendropy/interop/biopython.py -> build/bdist.linux-x86_64/wheel/dendropy/interop copying build/lib/dendropy/interop/entrez.py -> build/bdist.linux-x86_64/wheel/dendropy/interop copying build/lib/dendropy/interop/ete.py -> build/bdist.linux-x86_64/wheel/dendropy/interop copying build/lib/dendropy/interop/gbif.py -> build/bdist.linux-x86_64/wheel/dendropy/interop copying build/lib/dendropy/interop/genbank.py -> build/bdist.linux-x86_64/wheel/dendropy/interop copying build/lib/dendropy/interop/itol.py -> build/bdist.linux-x86_64/wheel/dendropy/interop copying build/lib/dendropy/interop/muscle.py -> build/bdist.linux-x86_64/wheel/dendropy/interop copying build/lib/dendropy/interop/paup.py -> build/bdist.linux-x86_64/wheel/dendropy/interop copying build/lib/dendropy/interop/raxml.py -> build/bdist.linux-x86_64/wheel/dendropy/interop copying build/lib/dendropy/interop/rspr.py -> build/bdist.linux-x86_64/wheel/dendropy/interop copying build/lib/dendropy/interop/rstats.py -> build/bdist.linux-x86_64/wheel/dendropy/interop copying build/lib/dendropy/interop/seqgen.py -> build/bdist.linux-x86_64/wheel/dendropy/interop creating build/bdist.linux-x86_64/wheel/dendropy/legacy copying build/lib/dendropy/legacy/__init__.py -> build/bdist.linux-x86_64/wheel/dendropy/legacy copying build/lib/dendropy/legacy/coalescent.py -> build/bdist.linux-x86_64/wheel/dendropy/legacy copying build/lib/dendropy/legacy/continuous.py -> build/bdist.linux-x86_64/wheel/dendropy/legacy copying build/lib/dendropy/legacy/ncbi.py -> build/bdist.linux-x86_64/wheel/dendropy/legacy copying build/lib/dendropy/legacy/popgensim.py -> build/bdist.linux-x86_64/wheel/dendropy/legacy copying build/lib/dendropy/legacy/popgenstat.py -> build/bdist.linux-x86_64/wheel/dendropy/legacy copying build/lib/dendropy/legacy/reconcile.py -> build/bdist.linux-x86_64/wheel/dendropy/legacy copying build/lib/dendropy/legacy/seqmodel.py -> build/bdist.linux-x86_64/wheel/dendropy/legacy copying build/lib/dendropy/legacy/seqsim.py -> build/bdist.linux-x86_64/wheel/dendropy/legacy copying build/lib/dendropy/legacy/treecalc.py -> build/bdist.linux-x86_64/wheel/dendropy/legacy copying build/lib/dendropy/legacy/treemanip.py -> build/bdist.linux-x86_64/wheel/dendropy/legacy copying build/lib/dendropy/legacy/treesim.py -> build/bdist.linux-x86_64/wheel/dendropy/legacy copying build/lib/dendropy/legacy/treesplit.py -> build/bdist.linux-x86_64/wheel/dendropy/legacy copying build/lib/dendropy/legacy/treesum.py -> build/bdist.linux-x86_64/wheel/dendropy/legacy creating build/bdist.linux-x86_64/wheel/dendropy/mathlib copying build/lib/dendropy/mathlib/__init__.py -> build/bdist.linux-x86_64/wheel/dendropy/mathlib copying build/lib/dendropy/mathlib/mathfn.py -> build/bdist.linux-x86_64/wheel/dendropy/mathlib copying build/lib/dendropy/mathlib/probability.py -> build/bdist.linux-x86_64/wheel/dendropy/mathlib copying build/lib/dendropy/mathlib/statistics.py -> build/bdist.linux-x86_64/wheel/dendropy/mathlib creating build/bdist.linux-x86_64/wheel/dendropy/model copying build/lib/dendropy/model/__init__.py -> build/bdist.linux-x86_64/wheel/dendropy/model copying build/lib/dendropy/model/birthdeath.py -> build/bdist.linux-x86_64/wheel/dendropy/model copying build/lib/dendropy/model/coalescent.py -> build/bdist.linux-x86_64/wheel/dendropy/model copying build/lib/dendropy/model/continuous.py -> build/bdist.linux-x86_64/wheel/dendropy/model copying build/lib/dendropy/model/discrete.py -> build/bdist.linux-x86_64/wheel/dendropy/model copying build/lib/dendropy/model/multispeciescoalescent.py -> build/bdist.linux-x86_64/wheel/dendropy/model copying build/lib/dendropy/model/parsimony.py -> build/bdist.linux-x86_64/wheel/dendropy/model copying build/lib/dendropy/model/protractedspeciation.py -> build/bdist.linux-x86_64/wheel/dendropy/model copying build/lib/dendropy/model/reconcile.py -> build/bdist.linux-x86_64/wheel/dendropy/model copying build/lib/dendropy/model/treeshape.py -> build/bdist.linux-x86_64/wheel/dendropy/model creating build/bdist.linux-x86_64/wheel/dendropy/simulate copying build/lib/dendropy/simulate/__init__.py -> build/bdist.linux-x86_64/wheel/dendropy/simulate copying build/lib/dendropy/simulate/charsim.py -> build/bdist.linux-x86_64/wheel/dendropy/simulate copying build/lib/dendropy/simulate/popgensim.py -> build/bdist.linux-x86_64/wheel/dendropy/simulate copying build/lib/dendropy/simulate/treesim.py -> build/bdist.linux-x86_64/wheel/dendropy/simulate creating build/bdist.linux-x86_64/wheel/dendropy/utility creating build/bdist.linux-x86_64/wheel/dendropy/utility/libexec copying build/lib/dendropy/utility/libexec/__init__.py -> build/bdist.linux-x86_64/wheel/dendropy/utility/libexec copying build/lib/dendropy/utility/__init__.py -> build/bdist.linux-x86_64/wheel/dendropy/utility copying build/lib/dendropy/utility/bibtex.py -> build/bdist.linux-x86_64/wheel/dendropy/utility copying build/lib/dendropy/utility/bitprocessing.py -> build/bdist.linux-x86_64/wheel/dendropy/utility copying build/lib/dendropy/utility/cli.py -> build/bdist.linux-x86_64/wheel/dendropy/utility copying build/lib/dendropy/utility/constants.py -> build/bdist.linux-x86_64/wheel/dendropy/utility copying build/lib/dendropy/utility/container.py -> build/bdist.linux-x86_64/wheel/dendropy/utility copying build/lib/dendropy/utility/debug.py -> build/bdist.linux-x86_64/wheel/dendropy/utility copying build/lib/dendropy/utility/deprecate.py -> build/bdist.linux-x86_64/wheel/dendropy/utility copying build/lib/dendropy/utility/error.py -> build/bdist.linux-x86_64/wheel/dendropy/utility copying build/lib/dendropy/utility/filesys.py -> build/bdist.linux-x86_64/wheel/dendropy/utility copying build/lib/dendropy/utility/messaging.py -> build/bdist.linux-x86_64/wheel/dendropy/utility copying build/lib/dendropy/utility/metavar.py -> build/bdist.linux-x86_64/wheel/dendropy/utility copying build/lib/dendropy/utility/processio.py -> build/bdist.linux-x86_64/wheel/dendropy/utility copying build/lib/dendropy/utility/terminal.py -> build/bdist.linux-x86_64/wheel/dendropy/utility copying build/lib/dendropy/utility/textprocessing.py -> build/bdist.linux-x86_64/wheel/dendropy/utility copying build/lib/dendropy/utility/timeprocessing.py -> build/bdist.linux-x86_64/wheel/dendropy/utility copying build/lib/dendropy/utility/urlio.py -> build/bdist.linux-x86_64/wheel/dendropy/utility copying build/lib/dendropy/utility/vcsinfo.py -> build/bdist.linux-x86_64/wheel/dendropy/utility copying build/lib/dendropy/__init__.py -> build/bdist.linux-x86_64/wheel/dendropy copying build/lib/dendropy/__main__.py -> build/bdist.linux-x86_64/wheel/dendropy running install_egg_info Copying src/DendroPy.egg-info to build/bdist.linux-x86_64/wheel/DendroPy-4.6.0-py3.11.egg-info running install_scripts creating build/bdist.linux-x86_64/wheel/DendroPy-4.6.0.data creating build/bdist.linux-x86_64/wheel/DendroPy-4.6.0.data/scripts copying build/scripts-3.11/dendropy-format -> build/bdist.linux-x86_64/wheel/DendroPy-4.6.0.data/scripts copying build/scripts-3.11/sumlabels.py -> build/bdist.linux-x86_64/wheel/DendroPy-4.6.0.data/scripts copying build/scripts-3.11/sumtrees.py -> build/bdist.linux-x86_64/wheel/DendroPy-4.6.0.data/scripts changing mode of build/bdist.linux-x86_64/wheel/DendroPy-4.6.0.data/scripts/dendropy-format to 755 changing mode of build/bdist.linux-x86_64/wheel/DendroPy-4.6.0.data/scripts/sumlabels.py to 755 changing mode of build/bdist.linux-x86_64/wheel/DendroPy-4.6.0.data/scripts/sumtrees.py to 755 creating build/bdist.linux-x86_64/wheel/DendroPy-4.6.0.dist-info/WHEEL creating '/builddir/build/BUILD/DendroPy-4.6.0/.pyproject-builddir/pip-wheel-2_g3mrow/.tmp-wuyqdajj/DendroPy-4.6.0-py3-none-any.whl' and adding 'build/bdist.linux-x86_64/wheel' to it adding 'DendroPy-4.6.0.data/scripts/dendropy-format' adding 'DendroPy-4.6.0.data/scripts/sumlabels.py' adding 'DendroPy-4.6.0.data/scripts/sumtrees.py' adding 'dendropy/__init__.py' adding 'dendropy/__main__.py' adding 'dendropy/calculate/__init__.py' adding 'dendropy/calculate/combinatorics.py' adding 'dendropy/calculate/mathfn.py' adding 'dendropy/calculate/phylogeneticdistance.py' adding 'dendropy/calculate/popgenstat.py' adding 'dendropy/calculate/probability.py' adding 'dendropy/calculate/profiledistance.py' adding 'dendropy/calculate/statistics.py' adding 'dendropy/calculate/treecompare.py' adding 'dendropy/calculate/treemeasure.py' adding 'dendropy/calculate/treescore.py' adding 'dendropy/calculate/treesum.py' adding 'dendropy/dataio/__init__.py' adding 'dendropy/dataio/fastareader.py' adding 'dendropy/dataio/fastawriter.py' adding 'dendropy/dataio/ioservice.py' adding 'dendropy/dataio/multiphylipreader.py' adding 'dendropy/dataio/newick.py' adding 'dendropy/dataio/newickreader.py' adding 'dendropy/dataio/newickwriter.py' adding 'dendropy/dataio/newickyielder.py' adding 'dendropy/dataio/nexmlreader.py' adding 'dendropy/dataio/nexmlwriter.py' adding 'dendropy/dataio/nexmlyielder.py' adding 'dendropy/dataio/nexusprocessing.py' adding 'dendropy/dataio/nexusreader.py' adding 'dendropy/dataio/nexuswriter.py' adding 'dendropy/dataio/nexusyielder.py' adding 'dendropy/dataio/phylipreader.py' adding 'dendropy/dataio/phylipwriter.py' adding 'dendropy/dataio/tokenizer.py' adding 'dendropy/dataio/xmlprocessing.py' adding 'dendropy/datamodel/__init__.py' adding 'dendropy/datamodel/basemodel.py' adding 'dendropy/datamodel/charmatrixmodel.py' adding 'dendropy/datamodel/charstatemodel.py' adding 'dendropy/datamodel/datasetmodel.py' adding 'dendropy/datamodel/taxonmodel.py' adding 'dendropy/datamodel/treecollectionmodel.py' adding 'dendropy/datamodel/treemodel/__init__.py' adding 'dendropy/datamodel/treemodel/_bipartition.py' adding 'dendropy/datamodel/treemodel/_edge.py' adding 'dendropy/datamodel/treemodel/_node.py' adding 'dendropy/datamodel/treemodel/_tree.py' adding 'dendropy/interop/__init__.py' adding 'dendropy/interop/ape.py' adding 'dendropy/interop/biopython.py' adding 'dendropy/interop/entrez.py' adding 'dendropy/interop/ete.py' adding 'dendropy/interop/gbif.py' adding 'dendropy/interop/genbank.py' adding 'dendropy/interop/itol.py' adding 'dendropy/interop/muscle.py' adding 'dendropy/interop/paup.py' adding 'dendropy/interop/raxml.py' adding 'dendropy/interop/rspr.py' adding 'dendropy/interop/rstats.py' adding 'dendropy/interop/seqgen.py' adding 'dendropy/legacy/__init__.py' adding 'dendropy/legacy/coalescent.py' adding 'dendropy/legacy/continuous.py' adding 'dendropy/legacy/ncbi.py' adding 'dendropy/legacy/popgensim.py' adding 'dendropy/legacy/popgenstat.py' adding 'dendropy/legacy/reconcile.py' adding 'dendropy/legacy/seqmodel.py' adding 'dendropy/legacy/seqsim.py' adding 'dendropy/legacy/treecalc.py' adding 'dendropy/legacy/treemanip.py' adding 'dendropy/legacy/treesim.py' adding 'dendropy/legacy/treesplit.py' adding 'dendropy/legacy/treesum.py' adding 'dendropy/mathlib/__init__.py' adding 'dendropy/mathlib/mathfn.py' adding 'dendropy/mathlib/probability.py' adding 'dendropy/mathlib/statistics.py' adding 'dendropy/model/__init__.py' adding 'dendropy/model/birthdeath.py' adding 'dendropy/model/coalescent.py' adding 'dendropy/model/continuous.py' adding 'dendropy/model/discrete.py' adding 'dendropy/model/multispeciescoalescent.py' adding 'dendropy/model/parsimony.py' adding 'dendropy/model/protractedspeciation.py' adding 'dendropy/model/reconcile.py' adding 'dendropy/model/treeshape.py' adding 'dendropy/simulate/__init__.py' adding 'dendropy/simulate/charsim.py' adding 'dendropy/simulate/popgensim.py' adding 'dendropy/simulate/treesim.py' adding 'dendropy/utility/__init__.py' adding 'dendropy/utility/bibtex.py' adding 'dendropy/utility/bitprocessing.py' adding 'dendropy/utility/cli.py' adding 'dendropy/utility/constants.py' adding 'dendropy/utility/container.py' adding 'dendropy/utility/debug.py' adding 'dendropy/utility/deprecate.py' adding 'dendropy/utility/error.py' adding 'dendropy/utility/filesys.py' adding 'dendropy/utility/messaging.py' adding 'dendropy/utility/metavar.py' adding 'dendropy/utility/processio.py' adding 'dendropy/utility/terminal.py' adding 'dendropy/utility/textprocessing.py' adding 'dendropy/utility/timeprocessing.py' adding 'dendropy/utility/urlio.py' adding 'dendropy/utility/vcsinfo.py' adding 'dendropy/utility/libexec/__init__.py' adding 'DendroPy-4.6.0.dist-info/AUTHORS.rst' adding 'DendroPy-4.6.0.dist-info/LICENSE.rst' adding 'DendroPy-4.6.0.dist-info/METADATA' adding 'DendroPy-4.6.0.dist-info/WHEEL' adding 'DendroPy-4.6.0.dist-info/top_level.txt' adding 'DendroPy-4.6.0.dist-info/zip-safe' adding 'DendroPy-4.6.0.dist-info/RECORD' removing build/bdist.linux-x86_64/wheel Building wheel for DendroPy (pyproject.toml): finished with status 'done' Created wheel for DendroPy: filename=DendroPy-4.6.0-py3-none-any.whl size=458402 sha256=c5a2c409f62115838c29e97f3062d3eeb32aa833232dfc793f67ffede1ef74c4 Stored in directory: /builddir/.cache/pip/wheels/5a/b0/58/c61df9f1bdf8e4c280bad9d6cd25969a6538f4d2e50fe01320 Successfully built DendroPy + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.3kwJzR + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/python-dendropy-4.6.0-1.fc38.x86_64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/python-dendropy-4.6.0-1.fc38.x86_64 ++ dirname /builddir/build/BUILDROOT/python-dendropy-4.6.0-1.fc38.x86_64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/python-dendropy-4.6.0-1.fc38.x86_64 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd DendroPy-4.6.0 ++ ls /builddir/build/BUILD/DendroPy-4.6.0/pyproject-wheeldir/DendroPy-4.6.0-py3-none-any.whl ++ xargs basename --multiple ++ sed -E 's/([^-]+)-([^-]+)-.+\.whl/\1==\2/' + specifier=DendroPy==4.6.0 + TMPDIR=/builddir/build/BUILD/DendroPy-4.6.0/.pyproject-builddir + /usr/bin/python3 -m pip install --root /builddir/build/BUILDROOT/python-dendropy-4.6.0-1.fc38.x86_64 --prefix /usr --no-deps --disable-pip-version-check --progress-bar off --verbose --ignore-installed --no-warn-script-location --no-index --no-cache-dir --find-links /builddir/build/BUILD/DendroPy-4.6.0/pyproject-wheeldir DendroPy==4.6.0 Using pip 22.3.1 from /usr/lib/python3.11/site-packages/pip (python 3.11) Looking in links: /builddir/build/BUILD/DendroPy-4.6.0/pyproject-wheeldir Processing ./pyproject-wheeldir/DendroPy-4.6.0-py3-none-any.whl Installing collected packages: DendroPy Successfully installed DendroPy-4.6.0 + '[' -d /builddir/build/BUILDROOT/python-dendropy-4.6.0-1.fc38.x86_64/usr/bin ']' + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP /builddir/build/BUILDROOT/python-dendropy-4.6.0-1.fc38.x86_64/usr/bin/__pycache__ /builddir/build/BUILDROOT/python-dendropy-4.6.0-1.fc38.x86_64/usr/bin/dendropy-format /builddir/build/BUILDROOT/python-dendropy-4.6.0-1.fc38.x86_64/usr/bin/sumlabels.py /builddir/build/BUILDROOT/python-dendropy-4.6.0-1.fc38.x86_64/usr/bin/sumtrees.py recursedown('/builddir/build/BUILDROOT/python-dendropy-4.6.0-1.fc38.x86_64/usr/bin/__pycache__') /builddir/build/BUILDROOT/python-dendropy-4.6.0-1.fc38.x86_64/usr/bin/dendropy-format: updating /builddir/build/BUILDROOT/python-dendropy-4.6.0-1.fc38.x86_64/usr/bin/sumlabels.py: updating /builddir/build/BUILDROOT/python-dendropy-4.6.0-1.fc38.x86_64/usr/bin/sumtrees.py: updating + rm -rfv /builddir/build/BUILDROOT/python-dendropy-4.6.0-1.fc38.x86_64/usr/bin/__pycache__ removed '/builddir/build/BUILDROOT/python-dendropy-4.6.0-1.fc38.x86_64/usr/bin/__pycache__/sumtrees.cpython-311.pyc' removed '/builddir/build/BUILDROOT/python-dendropy-4.6.0-1.fc38.x86_64/usr/bin/__pycache__/sumlabels.cpython-311.pyc' removed directory '/builddir/build/BUILDROOT/python-dendropy-4.6.0-1.fc38.x86_64/usr/bin/__pycache__' + rm -f /builddir/build/BUILD/python-dendropy-4.6.0-1.fc38.x86_64-pyproject-ghost-distinfo + site_dirs=() + '[' -d /builddir/build/BUILDROOT/python-dendropy-4.6.0-1.fc38.x86_64/usr/lib/python3.11/site-packages ']' + site_dirs+=("/usr/lib/python3.11/site-packages") + '[' /builddir/build/BUILDROOT/python-dendropy-4.6.0-1.fc38.x86_64/usr/lib64/python3.11/site-packages '!=' /builddir/build/BUILDROOT/python-dendropy-4.6.0-1.fc38.x86_64/usr/lib/python3.11/site-packages ']' + '[' -d /builddir/build/BUILDROOT/python-dendropy-4.6.0-1.fc38.x86_64/usr/lib64/python3.11/site-packages ']' + for site_dir in ${site_dirs[@]} + for distinfo in /builddir/build/BUILDROOT/python-dendropy-4.6.0-1.fc38.x86_64$site_dir/*.dist-info + echo '%ghost /usr/lib/python3.11/site-packages/DendroPy-4.6.0.dist-info' + sed -i s/pip/rpm/ /builddir/build/BUILDROOT/python-dendropy-4.6.0-1.fc38.x86_64/usr/lib/python3.11/site-packages/DendroPy-4.6.0.dist-info/INSTALLER + PYTHONPATH=/usr/lib/rpm/redhat + /usr/bin/python3 -B /usr/lib/rpm/redhat/pyproject_preprocess_record.py --buildroot /builddir/build/BUILDROOT/python-dendropy-4.6.0-1.fc38.x86_64 --record /builddir/build/BUILDROOT/python-dendropy-4.6.0-1.fc38.x86_64/usr/lib/python3.11/site-packages/DendroPy-4.6.0.dist-info/RECORD --output /builddir/build/BUILD/python-dendropy-4.6.0-1.fc38.x86_64-pyproject-record + rm -fv /builddir/build/BUILDROOT/python-dendropy-4.6.0-1.fc38.x86_64/usr/lib/python3.11/site-packages/DendroPy-4.6.0.dist-info/RECORD removed '/builddir/build/BUILDROOT/python-dendropy-4.6.0-1.fc38.x86_64/usr/lib/python3.11/site-packages/DendroPy-4.6.0.dist-info/RECORD' + rm -fv /builddir/build/BUILDROOT/python-dendropy-4.6.0-1.fc38.x86_64/usr/lib/python3.11/site-packages/DendroPy-4.6.0.dist-info/REQUESTED removed '/builddir/build/BUILDROOT/python-dendropy-4.6.0-1.fc38.x86_64/usr/lib/python3.11/site-packages/DendroPy-4.6.0.dist-info/REQUESTED' ++ wc -l /builddir/build/BUILD/python-dendropy-4.6.0-1.fc38.x86_64-pyproject-ghost-distinfo ++ cut -f1 '-d ' + lines=1 + '[' 1 -ne 1 ']' + /usr/bin/python3 /usr/lib/rpm/redhat/pyproject_save_files.py --output-files /builddir/build/BUILD/python-dendropy-4.6.0-1.fc38.x86_64-pyproject-files --output-modules /builddir/build/BUILD/python-dendropy-4.6.0-1.fc38.x86_64-pyproject-modules --buildroot /builddir/build/BUILDROOT/python-dendropy-4.6.0-1.fc38.x86_64 --sitelib /usr/lib/python3.11/site-packages --sitearch /usr/lib64/python3.11/site-packages --python-version 3.11 --pyproject-record /builddir/build/BUILD/python-dendropy-4.6.0-1.fc38.x86_64-pyproject-record --prefix /usr '*' +auto + /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 4.6.0-1.fc38 --unique-debug-suffix -4.6.0-1.fc38.x86_64 --unique-debug-src-base python-dendropy-4.6.0-1.fc38.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/DendroPy-4.6.0 find: 'debug': No such file or directory + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2 Bytecompiling .py files below /builddir/build/BUILDROOT/python-dendropy-4.6.0-1.fc38.x86_64/usr/lib/python3.11 using python3.11 + /usr/lib/rpm/redhat/brp-python-hardlink Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.vsjyAV + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd DendroPy-4.6.0 + '[' '!' -f /builddir/build/BUILD/python-dendropy-4.6.0-1.fc38.x86_64-pyproject-modules ']' + PATH=/builddir/build/BUILDROOT/python-dendropy-4.6.0-1.fc38.x86_64/usr/bin:/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin + PYTHONPATH=/builddir/build/BUILDROOT/python-dendropy-4.6.0-1.fc38.x86_64/usr/lib64/python3.11/site-packages:/builddir/build/BUILDROOT/python-dendropy-4.6.0-1.fc38.x86_64/usr/lib/python3.11/site-packages + _PYTHONSITE=/builddir/build/BUILDROOT/python-dendropy-4.6.0-1.fc38.x86_64/usr/lib64/python3.11/site-packages:/builddir/build/BUILDROOT/python-dendropy-4.6.0-1.fc38.x86_64/usr/lib/python3.11/site-packages + PYTHONDONTWRITEBYTECODE=1 + /usr/bin/python3 -sP /usr/lib/rpm/redhat/import_all_modules.py -f /builddir/build/BUILD/python-dendropy-4.6.0-1.fc38.x86_64-pyproject-modules -t Check import: dendropy + RPM_EC=0 ++ jobs -p + exit 0 Processing files: python3-dendropy-4.6.0-1.fc38.noarch Provides: python-dendropy = 4.6.0-1.fc38 python3-dendropy = 4.6.0-1.fc38 python3.11-dendropy = 4.6.0-1.fc38 python3.11dist(dendropy) = 4.6 python3dist(dendropy) = 4.6 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/python3 python(abi) = 3.11 python3.11dist(setuptools) Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/python-dendropy-4.6.0-1.fc38.x86_64 Wrote: /builddir/build/SRPMS/python-dendropy-4.6.0-1.fc38.src.rpm Wrote: /builddir/build/RPMS/python3-dendropy-4.6.0-1.fc38.noarch.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.6AXz5t + umask 022 + cd /builddir/build/BUILD + cd DendroPy-4.6.0 + /usr/bin/rm -rf /builddir/build/BUILDROOT/python-dendropy-4.6.0-1.fc38.x86_64 + RPM_EC=0 ++ jobs -p + exit 0 Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.qcYJ19 + umask 022 + cd /builddir/build/BUILD + rm -rf DendroPy-4.6.0 DendroPy-4.6.0.gemspec + RPM_EC=0 ++ jobs -p + exit 0 Child return code was: 0