Metadata-Version: 2.1
Name: genome2json
Version: 0.1.1
Summary: Parse genomes in GenBank/GFF3 formats to JSON
Home-page: https://www.github.com/gamcil/genome2json
Author: Cameron Gilchrist
License: UNKNOWN
Platform: UNKNOWN
Classifier: Programming Language :: Python :: 3
Classifier: License :: OSI Approved :: MIT License
Classifier: Operating System :: OS Independent
Requires-Python: >3.6
Description-Content-Type: text/markdown

# genome2json
Parse genomes in GenBank/GFF3 format to JSON

Implemented in pure Python using builtin libraries.


```
$ g2j -h

usage: Genome2JSON [-h] (-gbk GENBANK | -gff GENERAL) [-fa FASTA] -o OUTPUT
                   [--json_indent JSON_INDENT] [--grouped]

Parse genomes in GenBank/GFF3 format, and convert to JSON

optional arguments:
  -h, --help            show this help message and exit
  -gbk GENBANK, --genbank GENBANK
                        GenBank file
  -gff GENERAL, --general GENERAL
                        GFF3 file
  -fa FASTA, --fasta FASTA
                        FASTA file, required when parsing GFF
  -o OUTPUT, --output OUTPUT
                        Save JSON to file
  --json_indent JSON_INDENT
                        Number of spaces to indent in JSON
  --grouped             Group overlapping sequence features

Cameron Gilchrist 2020
```


