Reference_id	PubMedId	Author	Title	Journal	Volume	Pages	Year	CGSNL Gene Symbol	Gene Name Synonym
1		Abenes, M.L.P., R.E. Tabien, S.R. McCouch, R. Ikeda, P. Ronald, G.S. Khush and N. Huang	Orientation and integration of the classical and molecular genetic maps of chromosome 11 in rice.	Euphytica	76	81-87.	1994	LA,D27,Z2,XA21,ADH1	la,d27(d t), dt, dwf23, d27, OsD27,z2,Xa21*, Xa21, OsXA21,Adh1, Adh1/2, adh1/adh2, OsADH1
2		Adachi, T.	Dwarfness and leafy head newly found in rice.	Agric. & Hort.	10(4)	1048-1050.	1935	LHD	lhd
3	8103599	Ahn, S. and S.D. Tanksley	Comparative linkage maps of the rice and maize genomes.	Proc. Natl. Acad. Sci. U.S.A.	90	7980-7984.	1993		
4		Ahn, S.N., C.N. Bollich, A.M. McClung and S.D. Tanksley	RFLP analysis of genomic regions associated with cooked-kernel elongation in rice.	Theor. Appl. Genet.	87	27-32.	1993	SK2(T)(SCL, FGR)	sk2(t)(scl, fgr), fgr, scl, BAD2, BADH2, sk2, OsBADH2, Badh2, badh2, Os2AP, BADH-2, OsALDH10A8, ALDH10A8 
5	7903411	Ahn, S., J.A. Anderson, N.E. Sorrels and S.D. Tanksley	Homologous relationships of rice, wheat and maize chromosome.	Mol. Gen. Genet.	241	483-490.	1993		
6		Amemiya, A. and H. Akemine	Biochemical genetic studies on the root growth inhibiting complementary lethal genes on rice plant.	Bull. Natl. Inst. Agric. Sci., Ser.D	10	139-226.	1963	HWC1,HWC2	Hwc1(L2a),L-2-a, Lr1, Hwc-1, L2a,Hwc2(L2b),L-2-b, Lr2, Hwc-2, L2b, Hwc2
7		Ando, I., T. Yoshida and N. Kishimoto	Genetic analysis of some traits of paddy and upland rices using doubled haploids derived from the F1 plants of Kochihibiki x Sensho.	RGN	10	102-105.	1993	SP1,BHC	sp, SP, OsNPF4.1, NPF4.1, OsSP1,Ph=Bhc(Po), Bhc, Po, Ph, Bh3, PPO, Phr1, BH1
8		Angeles, E.R., G.S. Khush and E.A. Heinrichs	New genes for resistance to whitebacked planthopper in rice.	Crop Sci.	21(1)	47-50.	1981	WBPH2,WBPH1	Wph2,Wph1(Wbph), Wbph1, Wph1
9		Angeles, E.R., G.S. Khush and E.A. Heinrichs	Inheritance of resistance to planthoppers in rice.	Rice Genetics. IRRI, Manila, Philippines.		537-549.	1986	ZLH1,ZLH2,ZLH3	Zlh1,Zlh2,Zlh3
10		Aquino, R.C. and P.R. Jennings	Inheritance and significance of dwarfism in an Indica rice variety.	Crop Sci.	6(6)	551-554.	1966	SD1	sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2, OsPHQ1, OsPHq1, PHq1
11		Athwal, D.S. and M.D. Pathak	Genetics of resistance to rice insects.	Symposium on Rice Breeding, IRRI, Los Banos, Philippines.		375-386.	1972	SM	Sm
12		Athwal, D.S., M.D. Pathak, E.H. Bacalangco and C.D. Pura	Genetics of resistance to brown planthopper and green leafhopper in Oryza sativa L.	Crop Sci.	11(5)	747-750.	1971	GLH1,GLH2,GLH3	Glh1,Glh2,Glh3
13		Awan, M.A. and A.A. Cheema	Personal communication.	(Refer to RGN 5: 4)			1988	D59	d59(t), dwf40, d59
14		Berner, D.K. and B.J. Hoff	Inheritance of scent in American long grain rice.	Crop Sci.	26(5)	876-878.	1986	SK1	Sk1, Fgr
15		Bharaj, T.S., S.S. Bains., G.S. Sidhu and M.R. Gagneja	Genetics of fertility restoration of wild abortive' cytoplasmic male sterility in rice, Oryza sativa L.	Euphytica	56	199-203.	1991	RF3,R1*,RF4,R2*	Rf3* (R2, Rf2), Rf2, R2, Rf3, Rf-3,R1*,Rf4* (R1, Rf1), R1, Rf1, RfWA1, Rf4,R2*
16		Brar, D.S., B.G. de los Reyes, O. Panaud, A. Sanchez and G.S. Khush	Genetic mapping in rice using isozyme and RFLP markers.	Rice Genetics. II. IRRI, Manila, Philippines.		137-145.	1991	ADH1,AMP3,EST2,EST1,FDP1,GOT3,G6PD1,MAL1,PGI2	Adh1, Adh1/2, adh1/adh2, OsADH1,Amp3(Amp1), Amp_3, Amp-3, Amp3, Amp1,Est2, Est_2,Est1,Fdp1*, Fdp1,Got3, Aat3,G6pd1(t)*, G6pd1,Mal1, Mal I, Mal-I, Mal-1,Pgi2(Pgib), Pgib, Pgi_2, Pgi2, GPI-B, PGI-B, PHI-B, Pgi-b, PGI-b, SIS, OsSIS, OsPGI2
17		Cai, H.W.	Personal communication.	Personal communication			1995	EST11,AMP5	Est11(t), Est11,Amp5
18		Cai, H.W. and X.K. Wang	Studies on esterase isozymes in relation to origin and differentiation of cultivated rice.	RGN	11	67-69.	1994	EST10,EST2	Est10,Est2, Est_2
19		Cai, H.W. and  X.K. Wang	Four esterase loci newly detected.	RGN	11	83-85..	1994	EST11,EST10,EST13,EST2,EST12	Est11(t), Est11,Est10,Est13,Est2, Est_2,Est12
20		Cai, H.W. and  X.K. Wang	A new locus of esterase in rice. Est-10(t).	Breeding Science	44(Suppl. 2)	176	1994	EST10	Est10
21		Cai, H.W., X.L. Sun and X.K. Wang	New isozyme loci for malate dehydrogenase.	RGN	11	86-88.	1994	MAL3,MAL4,MAL2	Mal3(t)), Mal3,Mal4(t)*, Mal4,Mal2
22		Chandraratna, M.F.	Genetics of photoperiod sensitivity in rice.	J. Genet.	53(2)	215-223.	1955	SE1	Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, OsHd1,  Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21
23		Chang, T.T., C.C. Li and B.S. Vergara	Component analysis of duration from seeding to heading in rice by the basic vegetative phase and photoperiod-sensitive phase.	Euphytica	18(1)	79-91.	1969	ISE1	iSe1, i-Se-1
24		Chao, C.Y. and W.L. Hu	The effect of temperature on a desynaptic mutant in rice.	Bot. Bull. Acad. Sin.	2(2)	87-100.	1960	DS1	ds1
25		Chao, C.Y., D. Li and W.L. Hu	A desynaptic mutant in rice.	Bot. Bull. Acad. Sin.	1(1)	29-36.	1960	DS1	ds1
26		Chaudhary, B.P., P.S. Srivastava, M.N. Shrivastava and G.S. Khush	Inheritance of resistance to gall midge in some cultivars of rice.	Rice Genetics. IRRI, Manila, Philippines.		523-527.	1986	GM1,GM2	Gm1, Gm-1, GM-1,Gm2, Gm-2, GM-2
28		Cheng, R., Y. Ukai and A. Saito	Method of mapping a lethal factor in RFLP linkage map.	Breeding Science	44(Suppl. 2)	192	1994	L	L*
29		Cho, Y.G., M.Y. Eun, Y.H. Kim, T.Y. Chung and Y.A. Chae	The semidwarf gene, sd-1, of rice (Oryza sativa L.).I. Linkage with the esterase locus, EstI-2.	Theor. Appl. Genet.	89	49-53.	1994	SD1,EST	sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2, OsPHQ1, OsPHq1, PHq1,Est I2*, EstI2*, Est15, ESTL2
30		Cho, Y.G., M.Y. Eun, S.R. McCouch and Y.A. Chae	The semidwarf gene, sd-1, of rice (Oryza sativa L.).II. Molecular mapping and marker-assisted selection.	Theor. Appl. Genet.	89	54-59.	1994	SD1,PAU,EST	sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2, OsPHQ1, OsPHq1, PHq1,Pau,Est I2*, EstI2*, Est15, ESTL2
31		Chu, Y.E. and H.I. Oka	The genetic basis of crossing barriers between Oryza perennis subsp. barthii and its related taxa.	Evolution	24	135-144.	1970	DA,DB	Da(D1), Da, D1, Dhl3,Db(D2), D2, Db, Dhl4
32		Chu, Y.E. and H.I. Oka	The distribution and effects of genes causing F1 weakness in Oryza breviligulata and O.glaberrima.	Genetics	70	163-173.	1972	HWB1,HWB2	hwb1(w'a), w'a, hwb1,hwb2(w'b), w'b, hwb2
33		Chung, M.C., C.N. Ning and H.K. Wu	Localization of ribosomal RNA genes on rice chromosome.	Bot. Bull. Acad. Sin.	34	43-55.	1993	R5S2,R5S3,R45S2,R5S1	R5s2*, R5s2,R5s3*, R5s3,R45s2*(rDNA2), rDNA2, R45s2,R5s1*, r5s, R5s1
34		Chuong, P.V. and T. Omura	Studies on the chlorosis expressed under low temperature condition in rice, Oryza sativa L.	Bull. Inst. Trop. Agr. Kyushu Univ.	5	1-58.	1982	CHS2,CHS3,CHS4,CHS1	chs2(t)*, chs2,chs3(t)*, chs3,chs4(t)*, chs4,chs1(t)*, chs1
36		Dhulappanavar, C.V.	Linkage studies in rice (Oryza sativa L.).Flowering, growth habit and pigmentation.	Euphytica	28	435-443.	1979	PNR	Pnr
37		Dutt, K.V.L.N., D.V. Seshu and S.V.S. Shastry	Inheritance of resistance to stem borer in rice.	Indian J. Genet. & Plant Breed.	40(1)	166-171.	1980	SB	Sb, TRP1
38		Ebron, L.A., R.R. Yumol, R. Ikeda and T. Imbe	Inheritance of resistance to rice tungro spherical virus in some rice cultivars.	IRRN	19(4)	10-11.	1994	TSV2,TSV1	tsv2,tsv1(RTSV), RTSV, tsv1
39		Eiguchi, M. and Y. Sano	A gene complex responsible for seed shattering and panicle spreading found in common wild rices.	RGN	7	105-107.	1990	SH3,SPR3,SH	Sh3,Spr3(t), Spr3,Sh(t)*, Sh6
40		Eiguchi, M., H-Y. Hirano, Y. Sano and H. Morishima	Effects of water depth on internodal elongation and floral induction in a deepwater-tolerant rice line carrying the dw3 gene.	Japan. J. Breed.	43	135-139.	1993	DW3	dw3
41		Endo, T.	Differential regulation of peroxidaze isozymes coded by Px-1 locus in rice.	Jpn. J. Genet.	56(2)	175-183.	1981	RCP,REG1-2A,REG2-4A	Rcp,Reg1-2A, Reg1,Reg2-4A, Reg2
42	7247938	Endo, T.	Developmental modification and hybridization of allelic acid phosphatase isozymes in homo- and heterozygotes for the Acp-1 locus in rice.	Biochem. Genet.	19(3/4)	373-384.	1981	ACP1	Acp1
43		Ezuka, A., O. Horino, K. Toriyama, H. Shinoda and T. Morinaka	Inheritance of resistance of rice variety Wase Aikoku 3 to Xanthomonas oryzae.	Bull. Tokai-Kinki Agr. Exp. Stn.	28	124-130.	1975	XA3,XA2	Xa-3, Xa3 (Xa4b, Xa6, Xa9, Xa w), Xa3, Xaw, Xa6, Xa9, Xa4-b, XA26, Xa26(t), Xa26(t)*, Xa26, RKb, MRKb, MRKB, TRKb, Xa3/Xa26,Xa2
44		Foster, K.W. and J.N. Rutger	Independent segregation of semi-dwarfing genes and a gene for pubescence in rice.	J. Hered.	69(2)	137-138.	1978	SD2	sd2
45	17248812	Foster, K.W. and J.N. Rutger	Inheritance of semidwarfism in rice, Oryza sativa L.	Genetics	88	559-574.	1978	SD2,SD3	sd2,sd3
46		Fujii, K., Y. Hayano-Saito, A. Shumiya and M. Inoue	Genetical mapping based on the RFLP analysis for the panicle blast resistance derived from a rice parental line St.No.1.	Breeding Science	45(Suppl. 1)	209	1995	PBR*,PBST*	PBR*,Pbst*
47		Fujimaki, H. and S. Hiraiwa	Genetic analyses of male sterile lines induced by artificial mutation.	Japan. J. Breed.	36	401-408.	1986	MS18,MS19,MS20,MS21,MS22,MS23,MS24,MS25,MS26,MS27,MS28,MS30,MS31,MS32,MS33,MS34,MS35,MS36,MS37,MS38,MS39,MS42,MS43,MS45,MS44,MS40,MS41	ms18(t)*, ms18(t), ms18,ms19(t)*, ms19(t), ms19,ms20(t)*, ms20(t), ms20,ms21(t)*, ms21(t), ms21,ms22(t)*, ms22(t), ms22,ms23(t)*, ms23(t), ms23,ms24(t)* (=ms29), ms24(t), ms24,ms25(t)*, ms25(t), ms25,ms26(t)*, ms26(t), ms26,ms27(t)*, ms27(t), ms27,ms28(t)*, ms28(t), ms28,ms30(t)*, ms30,ms31(t)*, ms31,ms32(t)*, ms32,ms33(t)*, ms33,ms34(t)*, ms34,ms35(t)*, ms35,ms36(t)*, ms36,ms37(t)*, ms37,ms38(t)*, ms38,ms39(t)*, ms39,ms42(t)*, ms42,ms43(t)*, ms43,ms45(t)*, ms45,ms44(t)*, ms44,ms40(t)*, ms40,ms41(t)*, ms41
48		Fukuchi, A., Y. Suzuki, H. Hirochika and F. Kikuchi	Linkage relations between the photoperiod sensitivity gene Se-1 and two other genes, Pi-zt and Pgi-2.	RGN	9	47-50.	1992	PIZ,SE1	Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, OsHd1,  Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21
49		Fukuchi, A., A. Nakamura, H. Hirano, H. Hirochika and F. Kikuchi	Linkage analysis for a semidwarfing gene sd-1 on chromosome 1.	RGN	9	50-52.	1992	TOS1,SD1	Tos1*, Tos1, Osr14, Tos4,sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2, OsPHQ1, OsPHq1, PHq1
50		Fukuda, A., K. Yamamoto, Y. Harushima, N. Kurata, T. Sasaki, N. Nagamura and Y. Minobe	RFLP mapping of genes related to glycolytic pathway in rice.	Breeding Science	44(Suppl. 1)	239	1994	ALD2,TPI,GPD1,GPD2,ALD1,ALD3	Ald2*(ald2), Ald2, ald2,tpi*, tips, TI, OsTPI1, TPI1, OsTPI1.1, OsTPI1.2 ,gpd1*, gpd1,gpd2*, gpd2,Ald1*, Ald1,Ald3*(ald1), Ald3, ald1
51		Fukui, K., N. Ohmido and G.S. Khush	Variability in rDNA loci in the genus Oryza detected through fluorescence in situ hybridization.	Theor. Appl. Genet.	87	893-899.	1994	R45S1,R45S2,R45S3	R45s1*(rDNA1), rDNA1, r45s, R45s1,R45s2*(rDNA2), rDNA2, R45s2,R45s3*, R45s3
52		Fukuta, Y.	Genetic analysis of shattering-resistance mutant lines induced from an indica rice variety, Nan-jing 11.4. RFLP mapping of mutant gene in Hokuriku 143 (SR-5).	Breeding Science	45(Suppl. 1)	89	1995	SH4	sh4, sh4(t)*(sh3), sh3, sh4
53		Fukuta, Y., M. Yano and K. Fukui	Linkage analysis of the restorer gene  (Rf-1) in rice using restriction fragment length polymorphism markers.	Japan. J. Breed.	42(Suppl. 1)	164-165.	1992	RF1	Rf1 (Rf-1), rf-1, PPR791, PPR8-1, Rf-1, Rf1, Rf-1A, Rf5, Rf1a, RF5, Rf5(t)*(Rf(t)*), RF1A, PPR6, PLS31, OsPLS31
54		Futsuhara, Y.	Breeding of a new rice variety Reimei by gamma-ray irradiation.	Gamma Field Symposia	7	87-109.	1968	D49,SD1,D12	d49(t),sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2, OsPHQ1, OsPHq1, PHq1,d12(d50), dwf11, d50, d12, d32, F71, DMT9
55		Futsuhara, Y. and H. Kitano	Inheritance of a root-growth inhibiting mutant in rice.	RGN	2	70-71.	1985	RT	rt
56		Futsuhara, Y., S. Kondo and H. Kitano	Genetical studies on dense and lax panicles in rice II. Character expression and mode of inheritance of dense panicle rice.	Japan. J. Breed.	29(3)	239-247.	1979	DN2,DN3	Dn2,dn3
57		Ghesquiere, A. and M. Causse	Linkage study between molecular markers and genes controlling the reproductive barrier in interspecific backcross between O.sativa and O. longistaminata.	RGN	9	28-31.	1992	D1,D2	D1*, Da, Dhl1,D2*, Db, Dhl2
58		Glaszmann, J.C.	A verietal classification of Asian cultivated rice (Oryza sativa L.) based on isozyme polymorphism.	Rice Genetics. IRRI, Manila, Philippines.		83-90.	1986	PGI3	Pgi3
59		Goto, I.	Genetic sutdies on the resistance of rice plant to the blast fungus.I. Inheritance of resistance in crosses Sensho x H-79 and Imochishirazu x H-79.	Ann. Phytopath. Soc. Japan	36(5)	304-312.	1970	PISE1,PISE2,PISE3,PIIS1,PIIS2	Pi se1(Rb1), Rb1, Pise1, RMg11, Pi-se, Pi-se-1, Pise-1, Rb-1,Pi se2(Rb2), Rb2, Pise2, Pi-se-2, Rb-2,Pi se3(Rb3), Rb3, Pise3, Pi-se-3, Rb-3,Pi is1(Rb4), Rb4, Rb-4, Piis1, Pi-is-1,Pi is2(Rb5), Rb5, Piis2, Pi-is-2, Rb-5
60		Goto, I.	Genetic studies on the resistance of rice plant to the blast fungus.II Difference in resistance to the blast disease between Fukunishiki and its parental cultivar, Zenith.	Ann. Phytopath. Soc. Japan	42(3)	253-260.	1976	PIZ,MPI	Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2,MPi z(Rb6), Rb6, MPiz
61		Goto, I.	Genetic studies on resistance of rice plant to blast fungus (VII).Blast resistance genes of Kuroka.	Ann. Phytopath. Soc. Japan	54	460-465.	1988	PIKUR1,PIKUR2	Pi kur1*, PIKUR1, Pikur1*, Pikur1, RMg9, Pi-kur 1, Pi-kur1,Pi kur2*, PIKUR2, Pikur2, Pikur2*, RMg10, Pi-kur 2, Pi-kur2
62		Goto, I. and Ahmed Ali Baluch	Genetic studies on the resistance of rice plant to the blast fungus.V. Introduction of Pi-se of Sensho to Rikutonorin-mochi-No.4 and to No.26.	Bull. Yamagata Univ. Agr. Sci.	9(2)	121-125.	1983	PISE3,PISE1,PISE2	Pi se3(Rb3), Rb3, Pise3, Pi-se-3, Rb-3,Pi se1(Rb1), Rb1, Pise1, RMg11, Pi-se, Pi-se-1, Pise-1, Rb-1,Pi se2(Rb2), Rb2, Pise2, Pi-se-2, Rb-2
63		Goto, I. and Ahmed Ali Baluch	Genetic studies on the resistance of rice plant to the blast fungus.VI. Additive effect of blast resistance genes of Sensho under natural infection. (Preliminary report).	Bull. Yamagata Univ. Agr. Sci.	9(3)	273-283.	1984	PISE2,PISE1	Pi se2(Rb2), Rb2, Pise2, Pi-se-2, Rb-2,Pi se1(Rb1), Rb1, Pise1, RMg11, Pi-se, Pi-se-1, Pise-1, Rb-1
64		Goto, I., Y.L. Jaw and A.A. Baluch	Genetic studies on resistance of rice plant to blast fungus.IV. Linkage analysis of four genes, Pi-a, Pi-k, Pi-z and Pi-i.	Ann. Phytopath. Soc. Japan	47(2)	252-254.	1981	PIZ,PII,PIK,PIA	Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2,Pi i, Pii, Pi-i, Pii(t),Pik, RMg8, Pi-k, Pik-2, Pik-1, Pik1, Pik2, Pik-H4, Pikp-1, Pikh-1, Pik1-H4, Pikh-2, Pik2-H4,Pi a, Pia, Pi-a, Pia-1, Pia-2
65		Guiderdoni, E., J.C. Glaszmann and B. Courtois	Segregation of 12 isozyme genes among doubled haploid lines derived from a japonica x indica cross of rice (Oryza sativa L.).	Euphytica	42(1-2)	45-53.	1989	POX2,ACP2,ACP1,ACP4,EST1,EST7,SDH1	Pox2,Acp2,Acp1,Acp4,Est1,Est7,Sdh1, Skd
66		Hara, S.	Linkage between factors for sterility and anthocyanin pigmentation in rice plant.	Jpn. J. Genet.	21(2)	32	1946	SSK,MS1	ssk(sk), sk, ssk,ms1(sf), ms1(t)*, ms64, ms1, sf
67		Hasegawa, H. and M. Inoue	Induction and selection of hydroxy-L-proline resistant mutant in rice (Oryza sativa L.).	Japan. J. Breed.	33(3)	275-282.	1983	HPR1,HPR2(T),HPR3(T)	hpr1,hpr2(t), hpr2,hpr3(t), hpr3
68		Hasegawa, H., S. Mori, M. Inoue and M. Murakami	Hydroxy-L-proline resistant mutant in rice.	RGN	2	88-89.	1985	HPR1,HPR2(T),HPR3(T)	hpr1,hpr2(t), hpr2,hpr3(t), hpr3
69		Hashioka, Y.	Varietal resistance of rice to the sclerotial diseases.(Studies on pathological breeding of rice, IV).	Japan. J. Breed.	1(1)	21-26	1951	SC1,SC2	Sc1, RRs1,Sc2, RRs2
70		Hayano-Saito, Y., K. Saito, K. Fujii, J. Hashimoto and A. Saito	Linkage analysis of the resistance gene to rice stripe disease.	Japan. J. Breed.	43(Suppl. 2)	85	1993	STVB	Stvb(St2), St2, Stvb, Stv2
71		Hayasaka, H., T. Shimano, K. Ebana, Y. Nagamura, M. Yano, T. Sasaki, and K. Matsunaga	RELP mapping of a rice blast resistance gene Pi-b.	Breeding Science	45(Suppl. 1)	92	1995	PIB,PI13	Pi b(Pi s), Pis, Pib, Pi-s, Pi-hy,Pi13(t), Pi13(t)*, Pi13, Pi-13(t)*
72		Hernandez, J.E. and G.S. Khush	Genetics of resistance to white-backed planthopper in some rice (Oryza sativa L.)varieties.	Oryza Cuttack	18(1)	45-50.	1981	WBPH3,WBPH4	Wph3,wph4
73		Heu, M.H. and G. Shrestha	Genetic analysis of sheathed panicle in a Nepalese rice cultivar Gamadi.	Rice Genetics. IRRI, Manila, Philippines.		317-322.	1986	SHP4,SHP3	Shp4(Gb), Gb, Shp4,Shp3(Ga), Ga, Shp3
74		Heu, M.H. and Y.K. Kim	Inheritance of an opaque endosperm derived from Nepal Indica rice cultivar POKHARELI MASHINO.	S. Iyama and G. Takeda (eds.), Proc. 6th Internat. Congress of SABRAO.	I	321-324.	1989	WX1	wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx
76		Hirano, H., S. Komatsu, A. Nakamura, F. Kikuchi, H. Kajiwara, S. Tsunasawa and F. Sakiyama	Structural homology between semi-dwarfism-related proteins and glutelin seed protein in rice (Oryza sativa L.).	Theor. Appl. Genet.	83	153-158.	1991	GLU1	Glu1(Srp1, Gt2), Srp, Gt2, Glu1
78		Hittalmani, S., M. Foolad, T. Mew, R. Rodriguez and N. Huang	Identification of blast resistance gene, Pi-2(t) in rice plants by flanking DNA markers.	RGN	11	144-146.	1994	PIZ	Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2
79		Hong, S.K., H. Kitano, H. Satoh and Y. Nagato	Rice embryogenesis is completed through complicated interactions of many genes. In Toward enhanced and sustainable agricultural productivity in 2000's: Breeding research and biotechnology. 	Proc. 7th Intern. Congress SABRAO & Intern Symp. WSAA, Taichung District Agricultural Improvement Station, Taiwan, R.O.C.	I.	153-157.	1994		
80		Hsieh, R.M., C. Pai and H.K. Wu	Gene for naked-grain rice.	RGN	2	71	1985	LHS1	OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO, OsLHS1, OsLG3b, LG3b, qLGY3, LGY3, DLN80, OsDLN80, OLR, OsOLR, GW3p6, OsGW3p6, OsMADS1GW3p6, MADS1GW3p6, qLGY3/OsLG3b/GW3p6
81		Hsieh, S.C.	Genetic analysis in rice. 1. Coloration genes and inheritance of other characters in rice.	Bot. Bull. Acad. Sin.	1(2)	117-132.	1960	PS3,TSB,TSA,PS2,D26,LGT	Ps3(Ps2), Ps2, Ps3,tsb, ts2,tsa, ts1,Ps2(Ps1), Ps1, Ps2,d26, dwf22,lgt
82		Hsieh, S.C.	Cytogenetic studies and genetic analysis in rice.	Ph.D. Thesis. Hokkaido Univ.		212	1961	IPSA,PS3,YLB,IPSB,PS2	IPsa(IPs1), IPsa, IPs1, Ips3,Ps3(Ps2), Ps2, Ps3,ylb, z14,IPsb(IPs2), IPsb, IPs2, Ips4,Ps2(Ps1), Ps1, Ps2
83		Hsieh, S.C.	Recent advances in rice breeding and genetical studies in Taiwan.	Scientific Agriculture, Taipei.	4(12)	48-68.	1976	PI,D26,D57	Pi(t)*, Pi(t),d26, dwf22,d57[d(x)], dwf38, d(x), d57
84		Hsieh, S.C. and T.M. Chang	Genic analysis in rice. Genes for purple pericarp and other characters.	Japan. J. Breed.	14(3)	141-149.	1964	PRPA,PRPB	Prpa(Pp), Pp, Prpa, Prp1,Prpb(Pb), Pb, Prpb, Prp2
85		Hsieh, S.C. and S.T. Yen	Genic analysis in rice VII. Linkage relations of an induced dwarfness gene, d42.	Bot. Bull. Acad. Sin.	7(1)	82-87.	1966	D42	d42, dwf31
86		Hsieh, S.C. and L.M. Wang	Genetical studies on physico-chemical properties of rice grains.	S. Iyama and G. Takeda (eds.), Proc. 6th Internat. Congress of SABRAO.	I	325-328.	1989	AM,GT,H(T)*	Am(t)*, Am,Gt(t)*, Gt,H(t)*, Hcr
87		Hu, C.H.	An X-ray induced panicle-degenerating mutant in rice.	Japan. J. Breed.	11(1)	19-23.	1961	PLA1,LHD	pla1, OsPLA1, plt1, CYP78A11,lhd
88		Hu, C.H.	A newly induced semidwarfing gene with agronomic potentiality.	RGN	4	72-74.	1987	SD6	sd6(t), sd6
89		Hu, J. and J.N. Rutger	Pollen characteristics and genetics of induced and spontaneous genetic male-strile mutants in rice.	Plant Breeding	109	97-107.	1992	MS46,MS47,MS48,MS49,MS50,MS51,MS52,MS53,MS54,MS55,MS56,MS57,MS58,MS59,MS62,MS63,MS61,MS60	ms46(t)*, ms46,ms47(t)*, ms47,ms48(t)*, ms48,ms49(t)*, ms49,ms50(t)*, ms50,ms51(t)*, ms51,ms52(t)*, ms52,ms53(t)*, ms53, male sterile-53,ms54(t)*, ms54,ms55(t)*, ms55,ms56(t)*, ms56,ms57(t)*, ms57, male sterile-57,ms58(t)*, ms58,ms59(t)*, ms59,ms62(t)*, ms62,ms63(t)*, oms, ms63,ms61(t)*, ms61,ms60(t)*, ms60
90		Ichii, M., H. Sato, H. Hasegawa and O. Yatou	Genetic analysis of a nitrate reductase deficient mutant in rice.	Japan. J. Breed.	42(Suppl. 1)	382-383.	1992		
91		Ideta, O., A. Yoshimura, T. Matsumoto, H. Tsunematsu and N. Iwata	Integration of conventional and RFLP linkage maps in rice.I. Chromosomes 1, 2, 3 and 4.	RGN	9	128-129.	1992	D30	d30(d W), dW, dwf26, d30
92		Ideta, O., A. Yoshimura, T. Matsumoto, H. Tsunematsu, T. Mikoda, H. Satoh and N. Iwata	Integration of conventional and RFLP linkage maps in rice.III. On the arrangement of some marker genes and RELP markers.	Japan. J. Breed.	42(Suppl. 2)	126-127.	1992	SPL2,IBF,SPL10,PGL,SPL1,G1	spl2(bl3), spl2, bl3,IBf,spl10,pgl,Spl1, spl1(sl,bl2), sl, bl2, spl1,g1 (lng), lng, g1, ELE, Os ELE, OsG1, G1/ELE, LSL2, OsLSL2
93		Ideta, O., A. Yoshimura, T. Matsumoto, H. Tsunematsu, H. Saito and N. Iwata	Integration of conventional and RFLP linkage maps in rice.II. Choromosomes 6, 9, 10 and 11.	RGN	10	87-89.	1993	WX1,SPL10,PGL	wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx,spl10,pgl
94		Ideta, O., A. Yoshimura, T. Matsumoto, H. Tsunematsu and N. Iwata	Integration of conventional and RFLP linkage maps in rice.IV. On choromosomes 6, 9 and 11.	Japan. J. Breed.	43(Suppl. 2)	100	1993	SPL4,IBF,DP2,DRP2,V9,Z2,DP1	spl4(bl5), spl4, bl5,IBf,dp2,drp2,v9,z2,dp1, pa, DP1/PAL1, PAL1, OsDP1, OsAHL11, AHL11
95		Ideta, O., A. Yoshimura, M. Ashikari and N. Iwata	Integration of conventional and RFLP linkage maps in rice.III. Choromosomes 5, 7, 8 and 12.	RGN	11	116-117.	1994	D1,SPL7,D6,V11,V8,SPL1,RL3,SUG,G1,SPL5	d1, GPA1, GA1, OsGA1, RGA1, dwf1, XA7, RGA, D1/RGA1, D89, TGW5, OsTGW5, SRG5, OsSRG5,spl7, HSFA4D, HSF10, HSF15, OsHSF15, SP17, OsHsf-15, rHsf10, OsHsfA4d, HSfA4d, lrd13, HSF1,d6(d34), d34, dwf6,v11,v8,Spl1, spl1(sl,bl2), sl, bl2, spl1,rl3(rl1), rl1, rl3, cul10,sug(su), su, sug1, su1, su-1,g1 (lng), lng, g1, ELE, Os ELE, OsG1, G1/ELE, LSL2, OsLSL2,spl5(bl6,spl5-1), bl6, spl5, SF3b3
96		Ideta, O., A. Yoshimura and N. Iwata	Integration of conventional and RFLP linkage maps in rice.V. The locus of ebisu dwarf (d-2).	Breeding Science	44(Suppl. 2)	185	1994	D2	d2, dwf2, CYP90D2, D2/CYP90D2, OsD2, SMG11, OsSMG11, D2/SMG11, OsD2a, OsD2b
97		Iida, S. and T. Nishio	Genetic analysis of rice mutants with low allergenic protein.	Japan. J. Breed.	41(Suppl. 2)	352-353.	1991		
98		Iida, S., T. Tohnooka and T. Nishio	RFLP mapping of mutant genes decreasing the contents of rice glutelin.	Japan. J. Breed.	43(Suppl. 2)	92	1993	HPG1*,LGC1	hpg1*, hpg1,Lgc1 (LGC-1), Lgc1, LGC-1, glu1(t)*(Lgc1), glu1(t)*, glu8, Glu1
99		Iida, S., N. Kusaba and T. Nishio	RFLP mapping of mutant genes lacking a glutelin subunit of rice glutelin.	Japan. J. Breed.	44(Suppl. 2)	193	1994	GLU3,GLU2,LGC1	glu3(t)*, glu10, LGLU3,glu2(t)*, glu9, LGLU2,Lgc1 (LGC-1), Lgc1, LGC-1, glu1(t)*(Lgc1), glu1(t)*, glu8, Glu1
100		Ikeda, R.	Studies on the inheritance of resistance to the rice brown planthopper (Nilaparvata lugens Stal) and the breeding of resistant rice cultivars.	Bull. Nat. Agric. Res. Cent.	3	1-54.	1985	BPH4,BPH3,BPH2,BPH1	bph4,Bph3,bph2,Bph1
101		Ikeda, R. and C. Kaneda	Trisomic analysis of the gene Bph 1 for resistance to the brown planthopper. Nilaparvata lugens Stal. in rice.	Japan. J. Breed.	33(1)	40-44.	1983	BPH1,BPH4,BPH2,BPH3	Bph1,bph4,bph2,Bph3
102		Ikeda, R., R.E. Tabien and G.S. Khush	Chromosomal location of Xa-21.	RGN	8	102-103.	1991	XA21	Xa21*, Xa21, OsXA21
103		Ikehashi, H. and H. Araki	Multiple alleles in linkage group I of rice for spikelet sterility in distant crosses.	Japan. J. Breed.	34(Suppl. 2)	226-227.	1984	S5	S5-3, S5-4
104		Ikehashi, H. and H. Araki	Genetics of F1 sterility in remote crosses of rice.	Rice Genetics. IRRI, Manila, Philippines.		119-130.	1986	S5	S5-3, S5-4
105		Ikehashi, H., H. Araki and S. Yanagihara	Screening and analysis of wide compatibility loci in wide crosses of rice.	Rice Genetics. II. IRRI, Manila, Philippines.		33-43.	1991	S5	S5-3, S5-4
106		Imbe, T. and S. Matsumoto	Inheritance of resistance of rice varieties to the blast fungus strains virulent of the variety Reiho.	Japan. J. Breed.	35	332-339.	1985	PISH,PITA	Pi sh, Pish, Pi-sh, Pish(t),Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30, Trx30
107		Inukai, T., M. Maekawa and N. Shinbashi	Gene analysis for spikelet sterility of F1 hybrid between cultivars Silewah and Hayakogane.	RGN	8	110-112.	1991	SA,SB	S A(t)*, S-A(t),S B(t)*, S-B(t)
108		Inukai, T., D.J. Mackill, J.M. Bonman, S. Sarkarung, R. Zeigler, R. Nelson, I. Takamure and T. Kinoshita	Blast resistance genes Pi-2(t) and Pi-z may be allelic.	RGN	9	90-92.	1992	PIZ	Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2
109		Inukai, T., D.J. Mackill, J.M. Bonman, S. Sarkarung, R. Zeigler, R. Nelson, I. Takamure and T. Kinoshita	A blast resistance gene Pi-3(t) in near-isogenic line C104PKT.	RGN	9	94-95..	1992	PI3,PI5-2	Pi3, Pi5, Pi-3(t), Pi-3, Pi3(t), Pi5(t), Pi5-1, Pii,  RMg22, RMg21,Pi3, Pi5, Pi-3(t), Pi-3, Pi3(t), Pi5(t), Pi5-2, Pii,  RMg22, RMg21
110		Inukai, T., R.J. Nelson, R.S. Zeigler, S. Sarkarung, D.J. Mackill, J.M. Bonman, I. Takamure and T. Kinoshita	Allelism of blast resistance genes in near-isogenic lines of rice.	Phytopathology	84	1278-1283.	1994	PIZ,PIK,PI12,PI5-2,PIKM,PI1,PI30,PITA,PIKS,PII,PI3	Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2,Pik, RMg8, Pi-k, Pik-2, Pik-1, Pik1, Pik2, Pik-H4, Pikp-1, Pikh-1, Pik1-H4, Pikh-2, Pik2-H4,Pi12(t), Pi12(t)*, Pi12, Pi-12(t) ,Pi3, Pi5, Pi-3(t), Pi-3, Pi3(t), Pi5(t), Pi5-2, Pii,  RMg22, RMg21,Pik-m, Pi-m, Pi-km, Pikm, Pi m, Pikm1-TS, Pikm2-TS, Pi-km1, Pi-km2,Pi1, Pi-1, Pi1-5C, Pi1-6C,Pi-30(t), Pi30(t),Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30, Trx30,Pi-ks, Pi-s, Pik-s, Piks,Pi i, Pii, Pi-i, Pii(t),Pi3, Pi5, Pi-3(t), Pi-3, Pi3(t), Pi5(t), Pi5-1, Pii,  RMg22, RMg21
111		Ise, K.	Linkage analysis of some blast resistance gene in rice, Oryza sativa L.	Japan. J. Breed.	42(Suppl. 2)	388-389.	1991	PII2,PII	Pi i2, Pii2, Pii2(t),Pi i, Pii, Pi-i, Pii(t)
112		Ise, K.	A close linkage between the blast (bl) resistance gene Pi-ta2 and a marker on chromosome 12 in japonica rice.	IRRN	18(2)	14	1993	PITA	Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30, Trx30
113	18470071	Ishii, T., D.S. Brar, D.S. Multani and G.S. Khush	Molecular tagging of genes for brown planthopper resistance and earliness introgressed from Oryza australiensis into cultivated rice, O.sativa.	Genome	37	217-221.	1994	EF,BPH10	Ef(t)*, ef(t)*, Ef, ef,Bph10(t)*, Bph10
114		Ishikawa, R.	Analysis of two isozyme genes, Mal-1 and Pgi-3 and their frequencies in Indica and Japonica types.	RGN	7	100-103.	1990	PGI3,MAL1	Pgi3,Mal1, Mal I, Mal-I, Mal-1
115		Ishikawa, R.	Localization of gene Gdh-1 for glutamate dehydrogenase.	RGN	8	97-98.	1991	GDH1	Gdh1
116		Ishikawa, R.	Integration of isozyme genes on chromosome 12 into a linkage map.	RGN	8	100-101.	1991	GDH1,ACP1	Gdh1,Acp1
117		Ishikawa, R. and H. Morishima	Linkage analysis for four isozyme loci, Adh-1, Acp-1, Pox-2 and Pgd-2.	RGN	6	109-110.	1989	ADH1,PGD2,POX2,ACP1	Adh1, Adh1/2, adh1/adh2, OsADH1,Pgd2,Pox2,Acp1
118		Ishikawa, R., T. Kinoshita and H. Morishima	Trisomic analysis of genes for isozymes Location of Cat-1, Acp-1 and Pax-2, on chromosomes.	RGN	4	75-76.	1987	CAT1,POX2,ACP1	Cat1, Cat_1,Pox2,Acp1
119		Ishikawa, R., T. Kinoshita and H. Morishima	Linkage analysis of the Pgd-1 locus.	RGN	5	81-82.	1988	PGD1	Pgd1, 6Pgd1
120		Ishikawa, R., H. Morishima, K. Mori and T. Kinoshita	Choromosomal analysis of isozyme loci and the allelic expression at cellular level in rice.- Genetical studies on rice plant, XCVII -.	J. Fac. Agr. Hokkaido Univ.	64(1)	85-98.	1989	ADH1,GDH1,CAT1,AMP2,PGD1,SDH1,POX2,ACP2,ACP1,PGI1	Adh1, Adh1/2, adh1/adh2, OsADH1,Gdh1,Cat1, Cat_1,Amp2(AlapA), Lap2, AlapA, Amp_2, Amp-2, Amp2,Pgd1, 6Pgd1,Sdh1, Skd,Pox2,Acp2,Acp1,Pgi1(Pgia), Pgia, Pgi_1, Pgi1, GPI-A, PHI-A, Pgi-a, PGI-a
121		Ishikawa, R., M. Niizeki, K. Saito and H. Morishima	Studies on the distorted segregation of isozyme marker genes found in the linkage group d-33 in rice.	Japan. J. Breed.	39(Suppl. 2)	234-235.	1989	SDH1,POX2,ACP1	Sdh1, Skd,Pox2,Acp1
122		Ishikawa, R., H. Morishima, T. Kinoshita, T. Harada, M. Niizeki and K. Saito	Linkage analysis of nine isozyme genes on the conventional linkage map in rice.	Japan. J. Breed.	41(2)	265-272.	1991	ADH1,GDH1,PGI2,PGD2,AMP3,EST2,PGD1,SDH1,D33,POX2,ACP1,PGI1	Adh1, Adh1/2, adh1/adh2, OsADH1,Gdh1,Pgi2(Pgib), Pgib, Pgi_2, Pgi2, GPI-B, PGI-B, PHI-B, Pgi-b, PGI-b, SIS, OsSIS, OsPGI2,Pgd2,Amp3(Amp1), Amp_3, Amp-3, Amp3, Amp1,Est2, Est_2,Pgd1, 6Pgd1,Sdh1, Skd,d33(d B), dB, dwf29, d33,Pox2,Acp1,Pgi1(Pgia), Pgia, Pgi_1, Pgi1, GPI-A, PHI-A, Pgi-a, PGI-a
123		Ishikawa, R., H. Morishima and T. Kinoshita	Linkage analysis and application of isozyme genes in rice.	Rice Genetics. II. IRRI, Manila, Philippines.		127-136.	1991	ADH1,GDH1,PGI2,PGD2,AMP3,EST2,PGD1,SDH1,D33,POX2,ACP1,PGI1	Adh1, Adh1/2, adh1/adh2, OsADH1,Gdh1,Pgi2(Pgib), Pgib, Pgi_2, Pgi2, GPI-B, PGI-B, PHI-B, Pgi-b, PGI-b, SIS, OsSIS, OsPGI2,Pgd2,Amp3(Amp1), Amp_3, Amp-3, Amp3, Amp1,Est2, Est_2,Pgd1, 6Pgd1,Sdh1, Skd,d33(d B), dB, dwf29, d33,Pox2,Acp1,Pgi1(Pgia), Pgia, Pgi_1, Pgi1, GPI-A, PHI-A, Pgi-a, PGI-a
124		Isono, Y., H. Satoh and T. Omura	Characteristics of carbohydrate-synthetic mutants, sugary and shrunken, in rice.	Japan. J. Breed.	28(Suppl. 1)	130-131.	1978		
125		Itoh, T., H. Satoh and M.Y. Son	Gene analysis of mutants for 57kDa polypeptides of seed storage proteins in rice.	Japan. J. Breed.	43(Suppl. 2)	103	1993	GLUP4,GLUP3	glup4(esp8), esp8, glup4, OsRab5B2, Rab5a, OsRab5a, GPA1/Rab5a, GPA, GLUP4/Rab5, GLUP4/Rab5a, GPA1, OsGPA1,glup3(esp7), esp7, glup3, OsVPE1, VPE1, OsaLeg3
126		Iwata, N.	Exploitation and identification on chloroplast mutants.	Exploitation and identification of rice gene resources. N. Iwata, ed. (Report of Grant-in-Aid for Scientific Research).		10-19.	1990	D18,FS2,CHL6,V6	d18-h  (d18-I, d18h), dwf15, d25, d18, d18-k, d18-AD, d18-dy, OsGA3ox2, ga3ox2, OsGA3OX2, GA3OX2, OsGA3ox-2, GA3ox-2, GA3ox1,fs2,chl6,v6
127		Iwata, N. and T. Omura	Linkage analysis by reciprocal translocation method in rice.IV.	Japan. J. Breed.	18(Suppl. 2)	69-70.	1968	LHS1,DL	OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO, OsLHS1, OsLG3b, LG3b, qLGY3, LGY3, DLN80, OsDLN80, OLR, OsOLR, GW3p6, OsGW3p6, OsMADS1GW3p6, MADS1GW3p6, qLGY3/OsLG3b/GW3p6,OsDL, dl(lop), lop, dl, dl1, OsDRPq3, DRPq3
128		Iwata, N. and T. Omura	Linkage studies in rice (Oryza sativa L).On some mutants derived from chronic gamma irradiation.	Japan. J. Breed.	20(Suppl. 2)	118-119.	1970	FC1,D30,D11,D32,NAL5	fc1, OsTB1, tb1, OsTB1/FC1, Os TB1, TB1, OsFC1, MP3, OsMP3,d30(d W), dW, dwf26, d30,d11(d8), dwf10, d8, D11/CYP724B1, d11, CYP724B1, GNS4, OsD11, PMM1, OsPMM1, PMM1/D11, NBG4, OsCPB1, CPB1, CPB1/D11,d32(d K4,d12), d12, dwf28, dK4, d32,nal5(nal1), nal5, nal1, cul5
129		Iwata, N. and T. Omura	Linkage analysis by reciprocal translocation method in rice plants (Oryza sativa L).I. Linkage groups corresponding to the chromosome 1, 2, 3 and 4.	Japan. J. Breed.	21(1)	19-28.	1971	EG1,DP1,D10,OPS,LAX1,RI,DP2,DRP2	eg1, GY1, OsEG1, OsGY1,dp1, pa, DP1/PAL1, PAL1, OsDP1, OsAHL11, AHL11,d10(d15,d16), d16, d15, dwf9, d10, OsCCD8b, OsCCD8, CCD8, OsD10,ops,lax, lax(lx), lx, OsbHLH123, bHLH123, OsLAX1, BOS1, OsBOS1,ri,dp2,drp2
130		Iwata, N. and T. Omura	Linkage analysis by reciprocal translocation method in rice plants (Oryza sativa L).II. Linkage groups corresponding to the chromosomes 5, 6, 8, 9, 10 and 11.	Sci. Bull. Fac. Agr. Kyushu Univ.	25(3.4)	137-153.	1971	GH2,SP1,DP1,DP2,DL,D30,D11,TRI,CHL1	gh2, CAD2, CAD, OsCAD2, OsGH2 ,sp, SP, OsNPF4.1, NPF4.1, OsSP1,dp1, pa, DP1/PAL1, PAL1, OsDP1, OsAHL11, AHL11,dp2,OsDL, dl(lop), lop, dl, dl1, OsDRPq3, DRPq3,d30(d W), dW, dwf26, d30,d11(d8), dwf10, d8, D11/CYP724B1, d11, CYP724B1, GNS4, OsD11, PMM1, OsPMM1, PMM1/D11, NBG4, OsCPB1, CPB1, CPB1/D11,tri,chl1, chl1(ch1), ch1
131		Iwata, N. and T. Omura	Studies on the trisomics in rice plants (Oryza sativa L.). III. Relation between trisomics and genetic linkage groups.	Japan. J. Breed.	25(6)	363-368.	1975	FGL,RL4,AL4,AL5,AL7,RK1,AL3,AL6,AL2,AL1,IBF,DP2,BP,PGL,Z1,SPL1,RL3,D33,NAL3	fgl(fl), fl, fgl, OsFGL, OsPorB, PoPA, PORA, porA, OsPORA, PORB, OsPORB,rl4(rl2), rl2, rl4, cul11,al4, alK4,al5, alK5,al7(t), alK7, al7,rk1,al3, alK3,al6(t), al6, alK6,al2, alK2,al1(alK1), alK1, al1,IBf,dp2,Bp,pgl,z1,Spl1, spl1(sl,bl2), sl, bl2, spl1,rl3(rl1), rl1, rl3, cul10,d33(d B), dB, dwf29, d33,nal3(nal2), nal2, nal3, cul3, OsWOX3A, WOX3A, WOX3, OsWOX3, OsNS, OsNS1/OsNS2, OsPRS
132		Iwata, N. and T. Omura	Linkage studies in rice (Oryza sativa L.). On some mutants derived from chronic gamma irradiation.	J. Fac. Agr. Kyushu Univ.	21	117-127.	1977	BC3,SPL5,FC1,D27,V1,RL3,FGL,NAL5,RK1,NL2,RK2,Z1,Z2,YLM,RL4,GH3,D29	bc3, bc-3, OsDRP2B, DRP2B,spl5(bl6,spl5-1), bl6, spl5, SF3b3,fc1, OsTB1, tb1, OsTB1/FC1, Os TB1, TB1, OsFC1, MP3, OsMP3,d27(d t), dt, dwf23, d27, OsD27,v1, NUS1,OsV1, OsNUS1,rl3(rl1), rl1, rl3, cul10,fgl(fl), fl, fgl, OsFGL, OsPorB, PoPA, PORA, porA, OsPORA, PORB, OsPORB,nal5(nal1), nal5, nal1, cul5,rk1,nl2,rk2,z1,z2,ylm,rl4(rl2), rl2, rl4, cul11,gh3,d29(d K1), dwf25, dK1, d29
133		Iwata, N. and T. Omura	Linkage studies in rice (Oryza sativa L.). Some albino genes and their linkage relation with marker genes.	Sci. Bull. Fac. Agr. Kyushu Univ.	33(1)	11-18.	1978	AL8,AL4,AL5,AL7,AL3,AL6,AL2,AL1	al8, alK8,al4, alK4,al5, alK5,al7(t), alK7, al7,al3, alK3,al6(t), al6, alK6,al2, alK2,al1(alK1), alK1, al1
134		Iwata, N. and T. Omura	Studies on the trisomics in rice plants (Oryza sativa L.). VI. An accomplishment of a trisomic series in japonica rice plants.	Jpn. J. Genet.	59(3)	199-204.	1984	V2,SP1,D53,GH2,SUG,NAL3,V1,D27,D18,V3,FC1,RL4,FGL,SPL2,D30,GH3,D29,SPL3,CHL2,NAL5,RK1,YLM,FS2,SPL8,CHL1,NL2,OPS,SPL4,D51,V8,IBF,DRP2,BP,RK2,Z1,D28,Z2,SPL1,RL3,D33,Z4,UR2,CHL4,BC3,DU1,RFS,BGL	v2, mGmk, GMK, Gmk, pt/mtGK, pt/mt GK, OsV2, OsGMK,sp, SP, OsNPF4.1, NPF4.1, OsSP1,D53(D K3), DK3, Dwf34, SMXL6/7/8, OsD53,gh2, CAD2, CAD, OsCAD2, OsGH2 ,sug(su), su, sug1, su1, su-1,nal3(nal2), nal2, nal3, cul3, OsWOX3A, WOX3A, WOX3, OsWOX3, OsNS, OsNS1/OsNS2, OsPRS,v1, NUS1,OsV1, OsNUS1,d27(d t), dt, dwf23, d27, OsD27,d18-h  (d18-I, d18h), dwf15, d25, d18, d18-k, d18-AD, d18-dy, OsGA3ox2, ga3ox2, OsGA3OX2, GA3OX2, OsGA3ox-2, GA3ox-2, GA3ox1,v3, RNRL1, rnrl1, RNR1, RNRL, Osv3, OsRNRL1, OsRNR1, OsRNRL,fc1, OsTB1, tb1, OsTB1/FC1, Os TB1, TB1, OsFC1, MP3, OsMP3,rl4(rl2), rl2, rl4, cul11,fgl(fl), fl, fgl, OsFGL, OsPorB, PoPA, PORA, porA, OsPORA, PORB, OsPORB,spl2(bl3), spl2, bl3,d30(d W), dW, dwf26, d30,gh3,d29(d K1), dwf25, dK1, d29,spl3(bl4), spl3, bl4,chl2,nal5(nal1), nal5, nal1, cul5,rk1,ylm,fs2,spl8(bl8), spl8, bl8,chl1, chl1(ch1), ch1,nl2,ops,spl4(bl5), spl4, bl5,d51(d K8), dwf32, dK8, d51,v8,IBf,drp2,Bp,rk2,z1,d28(d C), dwf24, dC, d28,z2,Spl1, spl1(sl,bl2), sl, bl2, spl1,rl3(rl1), rl1, rl3, cul10,d33(d B), dB, dwf29, d33,z4,ur2,chl4,bc3, bc-3, OsDRP2B, DRP2B,du1,rfs, cul7, OsRFS, OsCHR729, CHR729, CHR4, OsCHR4, CRL6, OsCRL, OsCHR4/CHR729, PKR1, OsPHD32, PHD32,bgl, OsRopGEF10, Os RopGEF10, RopGEF10, OsGEF21, GEF21, SPD25, OsSPD25
135		Iwata, N., T. Nagamatsu and T. Omura	Abnormal segregation of waxy and apiculus coloration by a gametophyte gene belonging to the first linkage group in rice.	Japan. J. Breed.	14(1)	33-39.	1964	GA1	ga1
136		Iwata, N., H. Satoh and T. Omura	Linkage studies in rice.Linkage groups for 6 genes newly described.	Japan. J. Breed.	27(Suppl. 1)	250-251.	1977	D53,SPL7,BC1,LAX1,V2,SPL3,SP1,CHL2,DL,SPL6,D52,RI,D28,V4,LA,NL1	D53(D K3), DK3, Dwf34, SMXL6/7/8, OsD53,spl7, HSFA4D, HSF10, HSF15, OsHSF15, SP17, OsHsf-15, rHsf10, OsHsfA4d, HSfA4d, lrd13, HSF1,bc1, bc-1, OsBC1, CWA1, FP1, OsPCS3, PCS3,lax, lax(lx), lx, OsbHLH123, bHLH123, OsLAX1, BOS1, OsBOS1,v2, mGmk, GMK, Gmk, pt/mtGK, pt/mt GK, OsV2, OsGMK,spl3(bl4), spl3, bl4,sp, SP, OsNPF4.1, NPF4.1, OsSP1,chl2,OsDL, dl(lop), lop, dl, dl1, OsDRPq3, DRPq3,spl6,d52(d K2), dK2, dwf33, d52,ri,d28(d C), dwf24, dC, d28,v4,la,nl1, OsGATA15, GATA15, OsNL1
137		Iwata, N., T. Omura and H. Satoh	Linkage studies in rice (Oryza sativa L.). On some mutants for physiological leaf spots.	J. Fac. Agr. Kyushu Univ.	22	243-251.	1978	EG1,SPL6,SPL5,SPL2,GH2,SPL3,DL,SPL8,SPL7,AL2,LAX1,SPL4,SPL1,SPL9	eg1, GY1, OsEG1, OsGY1,spl6,spl5(bl6,spl5-1), bl6, spl5, SF3b3,spl2(bl3), spl2, bl3,gh2, CAD2, CAD, OsCAD2, OsGH2 ,spl3(bl4), spl3, bl4,OsDL, dl(lop), lop, dl, dl1, OsDRPq3, DRPq3,spl8(bl8), spl8, bl8,spl7, HSFA4D, HSF10, HSF15, OsHSF15, SP17, OsHsf-15, rHsf10, OsHsfA4d, HSfA4d, lrd13, HSF1,al2, alK2,lax, lax(lx), lx, OsbHLH123, bHLH123, OsLAX1, BOS1, OsBOS1,spl4(bl5), spl4, bl5,Spl1, spl1(sl,bl2), sl, bl2, spl1,spl9
138		Iwata, N., T. Omura and H. Satoh	Linkage studies in rice. The sequence of genes at the eight and eleventh linkage groups.	Japan. J. Breed.	28(Suppl. 1)	170-171.	1978	GH2,SP1,DL,D27,V2,D52,FC1,SPL3,LHS1,CHL2,BC1,CHL3,D53,Z1,D28,V4,CHL1,Z2,LA	gh2, CAD2, CAD, OsCAD2, OsGH2 ,sp, SP, OsNPF4.1, NPF4.1, OsSP1,OsDL, dl(lop), lop, dl, dl1, OsDRPq3, DRPq3,d27(d t), dt, dwf23, d27, OsD27,v2, mGmk, GMK, Gmk, pt/mtGK, pt/mt GK, OsV2, OsGMK,d52(d K2), dK2, dwf33, d52,fc1, OsTB1, tb1, OsTB1/FC1, Os TB1, TB1, OsFC1, MP3, OsMP3,spl3(bl4), spl3, bl4,OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO, OsLHS1, OsLG3b, LG3b, qLGY3, LGY3, DLN80, OsDLN80, OLR, OsOLR, GW3p6, OsGW3p6, OsMADS1GW3p6, MADS1GW3p6, qLGY3/OsLG3b/GW3p6,chl2,bc1, bc-1, OsBC1, CWA1, FP1, OsPCS3, PCS3,chl3,D53(D K3), DK3, Dwf34, SMXL6/7/8, OsD53,z1,d28(d C), dwf24, dC, d28,v4,chl1, chl1(ch1), ch1,z2,la
139		Iwata, N., H. Satoh and T. Omura	Linkage studies in rice. On some genes described newly which belonging to the third linkage group.	Japan. J. Breed.	29(Suppl. 1)	234-235.	1979	D18,AL8,CHL5,D55,FS2,D54,CHL6,RL4,V6	d18-h  (d18-I, d18h), dwf15, d25, d18, d18-k, d18-AD, d18-dy, OsGA3ox2, ga3ox2, OsGA3OX2, GA3OX2, OsGA3ox-2, GA3ox-2, GA3ox1,al8, alK8,chl5,d55(d K6), dK6, dwf36, d55,fs2,d54(d K5), dK5, d54, dwf35,chl6,rl4(rl2), rl2, rl4, cul11,v6
140		Iwata, N., H. Satoh and T. Omura	Linkage studies in rice. New genes belonging to the 11th linkage group.	Japan. J. Breed.	29(Suppl. 2)	182-183.	1979	V1,V5,V2,V7,DL,D52,FC1,DRP3,SPL3,DRP4,D56,AL10,CHL2,CHL3,CHL1,RL3,RL5,ST3,Z3,BC1	v1, NUS1,OsV1, OsNUS1,v5,v2, mGmk, GMK, Gmk, pt/mtGK, pt/mt GK, OsV2, OsGMK,v7,OsDL, dl(lop), lop, dl, dl1, OsDRPq3, DRPq3,d52(d K2), dK2, dwf33, d52,fc1, OsTB1, tb1, OsTB1/FC1, Os TB1, TB1, OsFC1, MP3, OsMP3,drp3,spl3(bl4), spl3, bl4,drp4,d56(d K7), dwf37, dK7, d56,al10,chl2,chl3,chl1, chl1(ch1), ch1,rl3(rl1), rl1, rl3, cul10,rl5(rl3), rl5, rl3, cul12,st3(stl), stl, st, st3,OsZ3, z3, SIET4, OsSIET4,bc1, bc-1, OsBC1, CWA1, FP1, OsPCS3, PCS3
141		Iwata, N., H. Satoh and T. Omura	Linkage analysis by use of trisomics in rice (Oryza sativa L. ). IV. Linkage groups locating on chromosomes 2 and 10.	Japan. J. Breed.	31(Suppl. 1)	66-67.	1981	BGL,SPL7,RFS,RC,NL1,V5,DRP3,DRP4,NL2,AL3,SPL8,AL6,OPS,RI,AL2,D6,AL9,G1,D1,SPL5	bgl, OsRopGEF10, Os RopGEF10, RopGEF10, OsGEF21, GEF21, SPD25, OsSPD25,spl7, HSFA4D, HSF10, HSF15, OsHSF15, SP17, OsHsf-15, rHsf10, OsHsfA4d, HSfA4d, lrd13, HSF1,rfs, cul7, OsRFS, OsCHR729, CHR729, CHR4, OsCHR4, CRL6, OsCRL, OsCHR4/CHR729, PKR1, OsPHD32, PHD32,Rc, OsbHLH017, OsbHLH17, SD7-1, qSD7-1/qPC7, OsGL3C, GL3C,nl1, OsGATA15, GATA15, OsNL1,v5,drp3,drp4,nl2,al3, alK3,spl8(bl8), spl8, bl8,al6(t), al6, alK6,ops,ri,al2, alK2,d6(d34), d34, dwf6,al9(t), al9,g1 (lng), lng, g1, ELE, Os ELE, OsG1, G1/ELE, LSL2, OsLSL2,d1, GPA1, GA1, OsGA1, RGA1, dwf1, XA7, RGA, D1/RGA1, D89, TGW5, OsTGW5, SRG5, OsSRG5,spl5(bl6,spl5-1), bl6, spl5, SF3b3
142		Iwata, N., H. Satoh and T. Omura	Linkage studies in rice.On some marker genes locating on chromosome 12.	Japan. J. Breed.	33(Suppl. 1)	114-115.	1983	D51,UR2,Z4,V8,SUG	d51(d K8), dwf32, dK8, d51,ur2,z4,v8,sug(su), su, sug1, su1, su-1
143		Iwata, N., H. Satoh and T. Omura	Studies on the trisomics in rice plants (Oryza sativa L.). VII. On some marker genes located on chromosome 2 and their sequence on the linkage map.	J. Fac. Agr. Kyushu Univ.	29(2.3)	139-144.	1984	BGL,NL1,SPL7,NL2,D1,AL3,SPL8,OPS,RI,AL2,AL1,Z2,RL3	bgl, OsRopGEF10, Os RopGEF10, RopGEF10, OsGEF21, GEF21, SPD25, OsSPD25,nl1, OsGATA15, GATA15, OsNL1,spl7, HSFA4D, HSF10, HSF15, OsHSF15, SP17, OsHsf-15, rHsf10, OsHsfA4d, HSfA4d, lrd13, HSF1,nl2,d1, GPA1, GA1, OsGA1, RGA1, dwf1, XA7, RGA, D1/RGA1, D89, TGW5, OsTGW5, SRG5, OsSRG5,al3, alK3,spl8(bl8), spl8, bl8,ops,ri,al2, alK2,al1(alK1), alK1, al1,z2,rl3(rl1), rl1, rl3, cul10
144		Iwata, N., H. Satoh and T. Omura	Linkage studies in rice.On the loci of some marker genes locating on the chromosome 5.	Japan. J. Breed.	35(Suppl. 1)	204-205.	1985	V1,BC1,LHS1,Z3,V2,V5,DL,D52,FC1,DRP3,SPL3,DRP4,D56,AL10,CHL2,CHL3,NAL6,CHL1,GH1	v1, NUS1,OsV1, OsNUS1,bc1, bc-1, OsBC1, CWA1, FP1, OsPCS3, PCS3,OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO, OsLHS1, OsLG3b, LG3b, qLGY3, LGY3, DLN80, OsDLN80, OLR, OsOLR, GW3p6, OsGW3p6, OsMADS1GW3p6, MADS1GW3p6, qLGY3/OsLG3b/GW3p6,OsZ3, z3, SIET4, OsSIET4,v2, mGmk, GMK, Gmk, pt/mtGK, pt/mt GK, OsV2, OsGMK,v5,OsDL, dl(lop), lop, dl, dl1, OsDRPq3, DRPq3,d52(d K2), dK2, dwf33, d52,fc1, OsTB1, tb1, OsTB1/FC1, Os TB1, TB1, OsFC1, MP3, OsMP3,drp3,spl3(bl4), spl3, bl4,drp4,d56(d K7), dwf37, dK7, d56,al10,chl2,chl3,Nal6, Cul6,chl1, chl1(ch1), ch1,gh1, hg
145		Iwata, N., H. Satoh and A. Yoshimura	Linkage map for Nishimura's chromosome 8.	RGN	6	106-108.	1989	GH2,SPL2,D30,D32,GH3,CHL10,BL1,TRI,D29,BC3	gh2, CAD2, CAD, OsCAD2, OsGH2 ,spl2(bl3), spl2, bl3,d30(d W), dW, dwf26, d30,d32(d K4,d12), d12, dwf28, dK4, d32,gh3,chl10,bl1,tri,d29(d K1), dwf25, dK1, d29,bc3, bc-3, OsDRP2B, DRP2B
146		Iwata, N., H. Satoh and A. Yoshimura	Linkage studies in rice (Oryza sativa L.). Linkage map of chromosome 3.	Bull. Inst. Trop. Agr. Kyushu Univ.	12	1-9.	1989	LAX1,D10,D18,EG1,AL8,CHL5,D54,D55,FS2,PN,RL4,CHL6,AL4,SPL6,V6,SPL2,D32,CHL10,A	lax, lax(lx), lx, OsbHLH123, bHLH123, OsLAX1, BOS1, OsBOS1,d10(d15,d16), d16, d15, dwf9, d10, OsCCD8b, OsCCD8, CCD8, OsD10,d18-h  (d18-I, d18h), dwf15, d25, d18, d18-k, d18-AD, d18-dy, OsGA3ox2, ga3ox2, OsGA3OX2, GA3OX2, OsGA3ox-2, GA3ox-2, GA3ox1,eg1, GY1, OsEG1, OsGY1,al8, alK8,chl5,d54(d K5), dK5, d54, dwf35,d55(d K6), dK6, dwf36, d55,fs2,Pn,rl4(rl2), rl2, rl4, cul11,chl6,al4, alK4,spl6,v6,spl2(bl3), spl2, bl3,d32(d K4,d12), d12, dwf28, dK4, d32,chl10,A(Sp), Sp, Ap
147	7913453	Jena, K.K., G.S. Khush and G. Kochert	Comparative RFLP mapping of a wild rice, Oryza officinalis, and cultivated rice, O.sativa.	Genome	37	382-389.	1994		
148		Jodon, N.E.	Inheritance and linkage relationships of a chlorophyll mutation in rice.	J. Amer. Soc. Agron.	32(5)	342-346.	1940	V1	v1, NUS1,OsV1, OsNUS1
149		Jodon, N.E.	Present status of rice genetics.	J. Agr. Assoc. China	10(N.S.)	5-21.	1955	DW1,V1	dw1(fh1), fh1, dw1,v1, NUS1,OsV1, OsNUS1
150		Jodon, N.E.	Inheritance of some of the more striking character in rice.	J. Hered.	48(4)	181-192.	1957	G2,WH,BL2,CL,LMX	G2(Gm, Gl), Gl, Gm,Wh, Hw,bl2(blm), blm, bl2,Cl,lmx*, lmx
151		Jodon, N.E. and S.J.P. Chilton	Some characters inherited independently of reaction to physiologic races of Cercospora oryzae in rice.	J. Amer. Soc. Agron.	38(10)	864-872.	1946	CE	Ce, Ce1, Ce2
152		Jodon, N.E. and J.G. Atkins	Duplicate blast resistance genes tested for linkage relationship.	Int. Rice Comm. Newsl.	15(3)	28-32.	1966	GF1	gf1
153		Jones, J.W.	Inheritance of natural and induced mutations in Caloro rice and observations on sterile Caloro types.	J. Hered.	43(2)	81-85.	1952	DN1,DN2,SHP1(EX),RL1	Dn1,Dn2,Shp1(Ex), Ex, Shp1,rl1, cul8
154		Kabir, Md. A. and G.S. Khush	Genetic analysis of resistance to brown planthopper in rice (Oryza sativa L).	Plant Breeding	100(1)	54-58.	1988	BPH6,BPH7	Bph6, OsBPH6,bph7
155		Kaji, R. and T. Ogawa	RFLP mapping of a blast resistance gene, Pi-k in rice.	Japan. J. Breed.	44(Suppl. 2)	181	1994	PIK	Pik, RMg8, Pi-k, Pik-2, Pik-1, Pik1, Pik2, Pik-H4, Pikp-1, Pikh-1, Pik1-H4, Pikh-2, Pik2-H4
156		Kaji, R. and T. Ogawa	Identification of the located chromosome of the resistance gene, Xa-7 to bacterial leaf blight in rice.	Breeding Science	45(Suppl. 1)	79	1995	XA7	Xa7
157		Kajiya, H., M. Yano and T. Sasaki	Molecular tagging of the gene wgln(t) conferring glume width in rice.	Breeding Science	45(Suppl. 1)	77	1995	WGL	wgl(t)*, wgl
159		Kaneda, C.	Genetics and breeding of rice for insect resistance -A brief review.	Gamma Field Symposia	27	71-89.	1988	GRH2,SB,GRH1	Grh2,Sb, TRP1,Grh1
160		Katayama, T.	Study on the progeneies of autotriploid and asynaptic rice plants.	Japan. J. Breed.	13(2)	83-87.	1963	AS	as
161		Kato, H., K. Maruyama and H. Araki	Temperature response and inheritance of a thermosensitive genic male sterility in rice.	Japan. J. Breed.	40(Suppl. 1)	352-353.	1990	LKG	Lk g
162		Kato, T.	Genetic analysis on the mutant alleles for long grains induced in a rice cultivar, GIMBOZU.	SABRAO Journal	22(2)	123-129.	1990		
163		Kato, T. and K. Takeda	An allele for long grain found in a mutant line of cultivar Gimbozu.	RGN	9	58-59.	1992	LKG,LKI2,LKI1	Lk g,lki2,lk i1, lki1, lk-i-1
164		Katsuo, K. and U. Mizushima	Studies on the cytoplasmic difference among rice varieties, Oryza sativa L.1. On the fertility of hybrids obtained reciprocally between cultivated and wild varieties.	Japan. J. Breed.	8(1)	1-5	1958	[CMS-CW]	[cms-CW]
165		Kaul, M.L.H.	Male sterility in doubled haploid rice.	RGN	3	109	1986	MS1,MS2	ms1(sf), ms1(t)*, ms64, ms1, sf,ms2 (msd), ms2(t)*, ms65, ms2, msd
166		Kaushik, R.P. and G.S. Khush	Genetic analysis of endosperm mutants in rice Oryza sativa L.	Theor. Appl. Genet.	83	146-152.	1991	FLO2,AE3,DU2035,DUEM47,DU2120,FLO1	flo2, flo3(t), Osflo2, Osflo3(t), Osflo-2, flo-2, FLO2-1, FLO2-2,ae3(t)*, ae3,du2035*, du9, du2035,duEM47*, du11, duEM47,du2120*, du10, du2120,flo1, flo1-1, o
167		Kawasaki, T., A. Yoshimura and N. Iwata	Trial construction of chromosome map of rice using reciprocal translocations.	Japan. J. Breed.	41(Suppl. 1)	330-331.	1991		
169		Khush, G.S. and K.C. Ling	Inheritance of resistance to grassy stunt virus and its vector in rice.	J. Hered.	65(3)	134-136.	1974	GSV	Gsv(Gs), Gs, Gsv
170		Khush, G.S. and A.L. Librojo	Naked seed rice (NSR) in allelic to op and lhs.	RGN	2	71-72.	1985	LHS1	OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO, OsLHS1, OsLG3b, LG3b, qLGY3, LGY3, DLN80, OsDLN80, OLR, OsOLR, GW3p6, OsGW3p6, OsMADS1GW3p6, MADS1GW3p6, qLGY3/OsLG3b/GW3p6
171		Khush, G.S. and R.J. Singh	Relationships between linkage groups and cytologically identifiable chromosomes of rice.	Rice Genetics. IRRI, Manila, Philippines.		239-248.	1986	HG	Hg, Fg
172		Khush, G.S. and A. Cruz	New chlorina markers for chromosome 8        (sugary group).	RGN	5	83-84.	1988	CHL8,CHL9	chl8,chl9
173		Khush, G.S. and A. Sanchez	Brittle node, a new marker for chromosome 2.	RGN	10	75-77.	1993	BC5	bc5, bn, bc-5
174	17246212	Khush, G.S. and R.J. Singh, S.C. Sur and A.L. Librojo	Primary trisomics of rice Origin, morphology, cytology and use in linkage mapping.	Genetics	107	141-163.	1984	SUG,D20,V8,SPL1	sug(su), su, sug1, su1, su-1,d20, dwf17,v8,Spl1, spl1(sl,bl2), sl, bl2, spl1
175		Khush, G.S., A.N.M. Rezaul Karim and E.R. Angeles	Genetics of resistance of rice cultivar ARC 10550 to Bangladesh brown planthopper biotype.	J. Genet.	64(2 & 3)	121-125.	1985	BPH5	bph5
176		Khush, G.S., E. Bacalangco and T. Ogawa	A new gene for resistance to bacterial blight from O.longistaminata.	RGN	7	121-122.	1990	XA21	Xa21*, Xa21, OsXA21
177		Khush, G.S., D.S. Multani, B.G. de los Reyes and D.S. Brar	Chromosomal location of Mdh-3 and Pgd-2 loci in rice through monosomic alien addition line (MAAL) analysis.	RGN	8	106-109.	1991	MDH2,MDH3,PGD2	Mdh2(t)*, Mdh2(t), Mdh2,Mdh3*, Mdh3,Pgd2
178		Khush, G.S., D.S. Brar, F.J. Zapata, R. Nelson, S. McCouch and G. Bottrell	Rice biotechnology at IRRI. In Toward enhanced and sustainable agricultural productivity in 2000's: Breeding research and biotechnology. 	Proc. 7th Intern. Congress SABRAO & Intern Symp. WSAA, Taichung District Agricultural Improvement Station, Taiwan, R.O.C.	II.	387-414.	1994	HBV,BPH10,GM2	Hbv,Bph10(t)*, Bph10,Gm2, Gm-2, GM-2
179		Kikuchi, F. and H. Ikehashi	Semidwarfing genes of high-yielding rice varieties in Japan.	Gamma Field Symposia	22	17-30.	1983	SD1	sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2, OsPHQ1, OsPHq1, PHq1
180		Kikuchi, H. and T. Kinoshita	Genetical study on amylose content in rice endosperm starch. -Genetical studies on rice plant, XCVI-.	Mem. Fac. Agr. Hokkaido Univ.	15(3)	299-319.	1987	AE2,LAM	ae2(t), ae2,lam(t), lam
181		Kinoshita, T.	Gene analysis and linkage map.	In Biology of Rice. S. Tsunoda and N. Takahashi eds. JSSP/Elsevier, Tokyo.		187-274.	1984	D3,NL1,GL1,D17,ALK,ST1,D18,RD,D11,D14,LHS1,SP1,D10,C,WX1,G1,LAX1,BHC,BC1,BF,D35,BHA,RC,BHB,A,BL5,D2,BL6,D1,CPS,D13,D19,D22,D23,D24,EUI1,G2,HLB,IPL5,MLS1,MLS2,SUG1,YSL,FS2,PN,D5,BL1,BL4,D20,HG,AN3,MI,IPL3,AN1,PIN1,WH,Z5,P,PR,ST4,GA6,IPL1,ST2,LG,GH1,RI,D21,AN2,BC2,ER,D12,IPL2,ZN,D4,IPL4,BL3,D9,RCN1,BL2,FS1,CL,HLA,UR1,D7,D6,IBF,DN1,SH1,LA,PL	d3, dwf3, D3/OsMAX2, Os_F0760, SOL1, OsORE9, ORE9, MAX2, OsRFPH2-10, RFPH2-10, OsD3,  OsFBL27, FBL27,nl1, OsGATA15, GATA15, OsNL1,gl1, NUDA/GL-1, NUDA/GL1, NUDA, GL-1, OsWOX3B, OsWOX2, OsWOX3, Os WOX3, WOX3B, WOX2, WOX3, LSY1, OsLSY1, DEP, OsDEP,d17(t), dwf14, d17, htd1, OsCCD7, CCD7, D17/HTD1, HTD1, OsHTD1, OsD17,alk, SSII-3, OsSSIIa, OsSSII-3, SSIIa, SSS2A, OsSSIIaChr6, SS2a,st1(ws1), ws1, st1, OsST1, RNRS1, OsRNRS1, rnrs1, RNRS, SDL/RNRS1, SDL, OsSDL, NSL2, OsNSL2,d18-h  (d18-I, d18h), dwf15, d25, d18, d18-k, d18-AD, d18-dy, OsGA3ox2, ga3ox2, OsGA3OX2, GA3OX2, OsGA3ox-2, GA3ox-2, GA3ox1,Rd, DFR, OsDFR, OS-DFR, OsDFR1, DFR1, DFR-1,d11(d8), dwf10, d8, D11/CYP724B1, d11, CYP724B1, GNS4, OsD11, PMM1, OsPMM1, PMM1/D11, NBG4, OsCPB1, CPB1, CPB1/D11,d14(d10), dwf13, d10, d14, D88, HTD2, OsHTD2, OsD14, qPPB3, D88/D14, HTD4,OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO, OsLHS1, OsLG3b, LG3b, qLGY3, LGY3, DLN80, OsDLN80, OLR, OsOLR, GW3p6, OsGW3p6, OsMADS1GW3p6, MADS1GW3p6, qLGY3/OsLG3b/GW3p6,sp, SP, OsNPF4.1, NPF4.1, OsSP1,d10(d15,d16), d16, d15, dwf9, d10, OsCCD8b, OsCCD8, CCD8, OsD10,C, Cp, OsC1, Os-C1, C1, OsMyb6, Myb6, OsPL6, PL6, OsGL1E, GL1E, Os2R_MYB63, 2R_MYB63, OsC1PLSr, C1PLSr,wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx,g1 (lng), lng, g1, ELE, Os ELE, OsG1, G1/ELE, LSL2, OsLSL2,lax, lax(lx), lx, OsbHLH123, bHLH123, OsLAX1, BOS1, OsBOS1,Ph=Bhc(Po), Bhc, Po, Ph, Bh3, PPO, Phr1, BH1,bc1, bc-1, OsBC1, CWA1, FP1, OsPCS3, PCS3,Bf,d35, d35(t), dwf30, OsKOL2, KOL2, KO2, OsKO2, OSKO2, KO, CYP701A, CYP701A6, Os KO2, OsKOL2/CYP701A,Bha(Bh1), Bha, Bh1,Rc, OsbHLH017, OsbHLH17, SD7-1, qSD7-1/qPC7, OsGL3C, GL3C,Bhb(Bh2), Bhb, Bh2,A(Sp), Sp, Ap,bl5,d2, dwf2, CYP90D2, D2/CYP90D2, OsD2, SMG11, OsSMG11, D2/SMG11, OsD2a, OsD2b,bl6,d1, GPA1, GA1, OsGA1, RGA1, dwf1, XA7, RGA, D1/RGA1, D89, TGW5, OsTGW5, SRG5, OsSRG5,cps,d13, dwf12,d19(t), dwf16, d19,d22(t), dwf19, d22,d23(t), dwf20, d23,d24(t), dwf21, d24,eui1, GA16,17ox, CYP714D1, EUI, CYP714D1/EUI, OsEUI, LG5, OsLG5,G2(Gm, Gl), Gl, Gm,Hlb, Hl2,IPl5,mls1,mls2,Su g1,ysl,fs2,Pn,d5, dwf5,bl1,bl4,d20, dwf17,Hg, Fg,An3,Mii, Mi1,IPl3,An1,Pin1,Wh, Hw,z5,P(Pa,Pb,Pc), A, Pa,Pr(Rp), Rp, Pr,st4(ws2), ws2, st4,ga6,IPl1,st2(gw), gw, st2,lg,gh1, hg,ri,d21, dwf18,An2,bc2, bc-2,er(o), o, er,d12(d50), dwf11, d50, d12, d32, F71, DMT9,IPl2,zn,d4, dwf4,IPl4,bl3,d9, dwf8,rcn1,bl2(blm), blm, bl2,fs1,Cl,Hla, Hl1,Ur1,d7, dwf7,d6(d34), d34, dwf6,IBf,Dn1,sh1,la,Pl, Pl1
182		Kinoshita, T. and M. Takahashi	Supplemental report on genes responsible for pubescence of glumes and leaves in rice plant. -Genetical studies on rice plant, XXII-.	Mem. Fac. Agr. Hokkaido Univ.	6(3)	364-370.	1968	HLB,HLA	Hlb, Hl2,Hla, Hl1
183		Kinoshita, T. and N. Shinbashi	Identification of dwarf genes and their character expression in the isogenic background.	Japan. J. Breed.	32(3)	219-231.	1982	D24,D42	d24(t), dwf21, d24,d42, dwf31
184		Kinoshita, T. and I. Takamure	Inheritance and linkage relationship on zebra chlorosis and zebra necrosis in rice. -Genetical studies on rice plant, LXXXVIII-.	J. Fac. Agr. Hokkaido Univ.	61(4)	445-455.	1984	GA10,Z5,ZN	ga10(t), ga10,z5,zn
185		Kinoshita, T. and M. Maekawa	Inheritance of purple leaf color found in Indica rice. -Genetical studies on rice plant, XCIV-.	J. Fac. Agr. Hokkaido Univ.	62(4)	453-466.	1986	IPL6,SHP2,SHP1(EX),PL	IPl6,shp2,Shp1(Ex), Ex, Shp1,Pl, Pl1
186		Kinoshita, T. and I. Takamure	Linkage studies by the use of backcross data in rice. -Genetical studies on rice plant, XCV-.	J. Fac. Agr. Hokkaido Univ.	63(1)	136-143.	1986	SPR1,D58	spr1,d58, dwf39
187		Kinoshita, T. and I. Takamure	Gene mapping of the first and second linkage groups in rice.	J. Fac. Agr. Hokkaido Univ.	64(3)	208-217.	1990	IPL5,LKF,LKI1,IPL2,IPL4,D9	IPl5,Lk f, Lkf,lk i1, lki1, lk-i-1,IPl2,IPl4,d9, dwf8
188		Kinoshita, T. and M. Takahashi	The one hunredth report of genetical studies on rice plant. -Linkage studies and future prospects-.	J. Fac. Agr. Hokkaido Univ.	65(1)	1-61.	1991		
189		Kinoshita, T., M. Takahashi, K. Mori and N. Shinbashi	Character expression and inheritance mode of three kinds of dwarf rice. -Genetical studies on rice plant, LXI-.	Res. Bull. Univ. Farm Hokkaido Univ.	19	64-75.	1974	D18,D20,D21,D19	d18-h  (d18-I, d18h), dwf15, d25, d18, d18-k, d18-AD, d18-dy, OsGA3ox2, ga3ox2, OsGA3OX2, GA3OX2, OsGA3ox-2, GA3ox-2, GA3ox1,d20, dwf17,d21, dwf18,d19(t), dwf16, d19
190		Kinoshita, T., M. Takahashi and S. Sato	Linkage analysis by reciprocal translocation method, with special references to the first linkage group. -Genetical studies on rice plant, LXVII-.	Mem. Fac. Agr. Hokkaido Univ.	9(3)	259-263.	1975	FS1	fs1
191		Kinoshita, T., Y. Hidano and M. Takahashi	A mutant 'long hull sterile' found out in the rice variety, Sorachi. -Genetical studies on rice plant, LXVII-.	Mem. Fac. Agr. Hokkaido Univ.	10(3)	247-268.	1977	LHS1	OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO, OsLHS1, OsLG3b, LG3b, qLGY3, LGY3, DLN80, OsDLN80, OLR, OsOLR, GW3p6, OsGW3p6, OsMADS1GW3p6, MADS1GW3p6, qLGY3/OsLG3b/GW3p6
192		Kishimoto, N., E. Shimosaka, S. Matsuura and A. Saito	A current RFLP linkage map of rice Alignment of the molecular map with the classical map.	RGN	9	118-124.	1992	FGL,DL,NL1,RFS,C,DP2,DRP2,BP,LA,SPL1,D33,A	fgl(fl), fl, fgl, OsFGL, OsPorB, PoPA, PORA, porA, OsPORA, PORB, OsPORB,OsDL, dl(lop), lop, dl, dl1, OsDRPq3, DRPq3,nl1, OsGATA15, GATA15, OsNL1,rfs, cul7, OsRFS, OsCHR729, CHR729, CHR4, OsCHR4, CRL6, OsCRL, OsCHR4/CHR729, PKR1, OsPHD32, PHD32,C, Cp, OsC1, Os-C1, C1, OsMyb6, Myb6, OsPL6, PL6, OsGL1E, GL1E, Os2R_MYB63, 2R_MYB63, OsC1PLSr, C1PLSr,dp2,drp2,Bp,la,Spl1, spl1(sl,bl2), sl, bl2, spl1,d33(d B), dB, dwf29, d33,A(Sp), Sp, Ap
193		Kishimoto, N., M.R. Foolad, E. Shimosaka, S. Matsuura and A. Saito	Alignment of molecular and classical linkage maps of rice, Oryza sativa.	Plant Cell Rep.	12	457-461.	1993		
194		Kishimoto, N., H. Itoh, Y. Ohashi and A. Saito	RFLP mapping of a coding sequence for rice peroxidase detection of a locus different from those determined by isozyme analysis.	Jpn. J. Genet.	69	101-104.	1994	POXCA	Pox cA*, Pox6
195		Kishimoto, N., K. Higo, H. Higo and A. Saito	The coding sequence for rice seed catalase detects a locus different from that determined by isozyme analysis.	Theor. Appl. Genet.	87	625-626.	1994	CATA	CATA1, Cat A1*, OSCAT-A, Cat2, CatA1, CAT-A, OsCatA, OsCAT, CAT, catA, OSCATA, OsCATc, OsCATA, OsCAT1A, CAT1, OsCAT1, OsCATC, OsCAT2
196		Kishimoto, N., H. Higo, K. Abe, S. Arai, A. Saito and K. Higo	Identification of the duplicated segments in rice chromosomes 1 and 5 by linkage analysis of cDNA markers of known functions.	Theor. Appl. Genet.	88	722-726.	1994	OC2,OC1,AS,ALD2,ALD1,ARF1,ARF2	Oc2*, Oc2, OC-II, OC-III, OCII, OsCYS2,Oc1*, Oc1, OC-I, SPOC-I, OsCP1, Oc, OCI, OsCYS1, OsPR6b, PR6b,as,Ald2*(ald2), Ald2, ald2,Ald1*, Ald1,Arf1*, Arf1, ARF-1,Arf2*, Arf2, ARF-2
197		Kitada, K. and T. Omura	Genetic control of meiosis in rice Oryza sativa L. II. Cytogenetical analyses of desynaptic mutants.	Jpn. J. Genet.	58	567-577.	1983	DS10,DS11,DS2,DS4,DS5,DS7,DS8,DS9,DS6,DS3	ds10(t), ds10,ds11(t), ds11,ds2(t), ds2,ds4(t), ds4,ds5(t), ds5,ds7(t), ds7,ds8(t), ds8,ds9(t), ds9,ds6(t), ds6,ds3(t), ds3
198		Kitamura, E.	Studies on cytoplasmic sterility of hybrids in distantly related varieties of rice, Oryza sativa L. I. Fertility of the F1hybrids between strains derived from a certain Philippine x Japanese variety crosses and Japanese varieties.	Japan. J. Breed.	12(2)	81-84.	1962	[CMS-TA]	[cms-TA]
199		Kitamura, E.	Studies on cytoplasmic sterility of hybrids in distantly related varieties of rice, Oryza sativa L. II. Analysis of nuclear genes in Japanese varieties controlling cytoplasmic sterility.	Japan. J. Breed.	12(3)	166-168.	1962	[CMS-TA]	[cms-TA]
200		Kitano, H. and Y. Futsuhara	Inheritance and gene expression of a root-growth inhibiting mutant in rice (Oryza sativa L.).	S. Iyama and G. Takeda (eds.), Proc. 6th Internat. Congress of SABRAO.	I	349-352.	1989	RT	rt
201		Kiyosawa, S.	The inheritance of resistance of the Zenith type varieties of rice blast fungus.	Japan. J. Breed.	17(2)	99-107.	1967	PIZ	Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2
202		Kiyosawa, S.	Inheritance of a particular sensitivity of the variety Sekiguchi Asahi to pathogens and chemicals and linkage relationship with blast resistance genes.	Bull. Natl. Inst. Agric. Sci., Ser.D	21	61-71.	1970	SL,PIK,PITA	OsSL, sl (spl1), sl*, sl, spl1, CYP71P1, Os CYP71P1, T5H, OsT5H, CYP71A1, OsCYP71A1, OsLLM1, LLM1, LLM1/OsSL, ELL1, OsELL1, ELL1/SL, OsT5H1,Pik, RMg8, Pi-k, Pik-2, Pik-1, Pik1, Pik2, Pik-H4, Pikp-1, Pikh-1, Pik1-H4, Pikh-2, Pik2-H4,Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30, Trx30
203		Kiyosawa, S.	Genetics of blast resistance.	Symposium on Rice Breeding, IRRI, Los Banos, Philippines.		203-225.	1972	PIB,PIZ,PIT,PIK,PII2,PITA,PII,PIA	Pi b(Pi s), Pis, Pib, Pi-s, Pi-hy,Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2,Pit, Pit(K59), Pit(Npb), Pi-t, PitNpb, PitK59, Pit1, OsPit1,Pik, RMg8, Pi-k, Pik-2, Pik-1, Pik1, Pik2, Pik-H4, Pikp-1, Pikh-1, Pik1-H4, Pikh-2, Pik2-H4,Pi i2, Pii2, Pii2(t),Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30, Trx30,Pi i, Pii, Pi-i, Pii(t),Pi a, Pia, Pi-a, Pia-1, Pia-2
204		Kiyosawa, S.	Identification of blast-resistance genes in some varieties.	Japan. J. Breed.	28(4)	287-296.	1978	PIKM,PIKH,PIK,PIM,PIZ,PIB	Pik-m, Pi-m, Pi-km, Pikm, Pi m, Pikm1-TS, Pikm2-TS, Pi-km1, Pi-km2,Pi-kh, Pi k-h, Pi54, Pi54rh, Pi-k(h), Pik-h, Pikh,Pik, RMg8, Pi-k, Pik-2, Pik-1, Pik1, Pik2, Pik-H4, Pikp-1, Pikh-1, Pik1-H4, Pikh-2, Pik2-H4,Pi-m, Pik-m(Pi m), Pik-m, Pi m, Pi-km,Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2,Pi b(Pi s), Pis, Pib, Pi-s, Pi-hy
205		Ko, T. and H. Yamagata	Studies on the induction of male-sterile strains in rice. 8. Linkage relationship of male-sterility genes to marker genes.	Japan. J. Breed.	35(Suppl. 2)	86-87.	1985	MS14,MS10	ms14,ms10
206		Ko, T. and H. Yamagata	Gene analysis of male sterility induced in rice. Studies on the utility of artificial mutations in plant breeding. VI.	Japan. J. Breed.	37	192-198.	1987	MS11,MS12,MS13,MS15,MS16,MS17,MS7,MS14,MS9,MS8,MS10	ms11,ms12,ms13,ms15,ms16,ms17,ms7,ms14,ms9,ms8,ms10
207		Ko, T. and H. Yamagata	Studies on the induction of male-sterile strains in rice. 9. Linkage groups of few male-sterility genes.	Japan. J. Breed.	39(Suppl. 1)	234-235.	1989	MS17,MS7,MS8,MS10	ms17,ms7,ms8,ms10
208		Kobayashi, A., C. Kaneda, R. Ikeda and H. Ikehashi	Inheritance of resistance to green rice leafhopper, Nephotettix cincticeps, in rice.	Japan. J. Breed.	30(Suppl. 1)	56-57.	1980	GRH2,GRH1	Grh2,Grh1
209		Komori, T., Y. Okumoto, T. Tanisaka and H. Yamagata	Studies on the utlilization of a mutator induced in rice. 6. Identification of the location of the slender-glume gene.	Japan. J. Breed.	42(Suppl. 1)	150-151.	1992	SLG	slg, Rurm1, Urm1, OsSUMO7, SUMO7
210		Kudo, M.	Genetical and breeding studies on physiological and ecological characters in hybrids between ecological groups of rice.	Bull. Natl. Inst. Agric. Sci., Ser.D	19	1-84.	1968	SE1,ALK	Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, OsHd1,  Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,alk, SSII-3, OsSSIIa, OsSSII-3, SSIIa, SSS2A, OsSSIIaChr6, SS2a
211		Kumamaru, T., H. Satoh, N. Iwata, T. Omura and M. Ogawa	Mutants affecting storage protein in rice seed.	RGN	3	101-103.	1986	ESP2,ESP1	esp2(rsp2), rsp2, esp2, PDIL1-1,esp1(rsp1), rsp1, esp1, OsESP1, ESP1/eRF1, eRF1, OseRF1
212		Kumamaru, T., H. Satoh, N. Iwata, T. Omura and M. Ogawa	Mutants for rice storage proteins. III. Genetic analysis of mutants for storage protein bodies in the srarchy endosperm.	Jpn. J. Genet.	62(4)	333-339.	1987	ESP1,ESP2,ESP3	esp1(rsp1), rsp1, esp1, OsESP1, ESP1/eRF1, eRF1, OseRF1,esp2(rsp2), rsp2, esp2, PDIL1-1,esp3(rsp3), rsp3, esp3
214		Kumamaru, T., H. Satoh, T. Omura and M. Ogawa	Location of a mutant gene for rice storage protein esp-3 on Nishimura's choromosome 9.	RGN	6	108-109.	1989	ESP3	esp3(rsp3), rsp3, esp3
215		Kumamaru, T., H. Satoh, T. Omura and M. Ogawa	Mutants for rice storage proteins. IV. Maternally inherited mutants for storage proteins of protein bodies in the starchy endosperm.	Heredity	64(1)	9-15.	1990	ESP2,ESP4,ESP3,ESP1	esp2(rsp2), rsp2, esp2, PDIL1-1,Esp4, 10/16-H,esp3(rsp3), rsp3, esp3,esp1(rsp1), rsp1, esp1, OsESP1, ESP1/eRF1, eRF1, OseRF1
216		Kumamaru, T., M. Ogawa and H. Satoh	Mutants for rice storage proteins.	Rice Genetics. II. IRRI, Manila, Philippines.		201-209.	1991	ESP2,ESP3,ESP4,ESP1	esp2(rsp2), rsp2, esp2, PDIL1-1,esp3(rsp3), rsp3, esp3,Esp4, 10/16-H,esp1(rsp1), rsp1, esp1, OsESP1, ESP1/eRF1, eRF1, OseRF1
217		Kumar, I. and H.L. Sharma	Inheritance of grain threshability in rice.	Euphytica	31	815-816.	1982	TH	Th
218		Kumar, R.V. and S.S. Virmani	Wide compatibility in rice (Oryza sativa L.).	Euphytica	64	71-80.	1992	WC	Wc*(S5-n,S-n), Wc1
219		Kurata, N., Y. Harushima, Y. Nagamura, K. Yamamoto, J-Z. Wu, A. Antonio, N. Sue, A. Shomura, T. Toyama, Y. Miyamoto, T. Kirihara, A. Miyao, T. Sasaki, M. Yano and Y. Minobe	Our current RELP maps of rice.	RGN	9	130-132.	1992		
220		Kurata, N., M. Yano, Y. Minobe and M. Gale	Conservation of genome structure between rice and wheat.	Bio/technology	12	276-278.	1994	ORYA,ACT1,SALT,CDC,SOD,ATP,ELF2,PKC2,HSP2*,SAL2,PKC1,HSP4*,GCW2,GCW4,ALD3,ALD2,TRYP,ADH2,ANT	ocp*, ocp, OsOCP, OsORYA,act1, AC1, RAC1, RAc1, ACT11, OsACT1,salT*(sal1), SalT1*, sal1, Sal1, SALT, ML, SalT, OsSalT, OsJRL, JRL, Osl43, OsL43, OsMBL1, MBL1, OsJRL01, JRL01, OsJRL1, JRL1,cdc*, cdc,sod*, sod,ATP*(atp1), ATPX, atp1,elf2*, elf2,pkc2*, pkc2,hsp2*, hsp2,sal2*, sal3,pkc1*, pkc1,hsp4*, hsp4,gcw2*, gcw2,gcw4*,Ald3*(ald1), Ald3, ald1,Ald2*(ald2), Ald2, ald2,TRYP*(tin), TRYP*, tin, Tryp,Adh2*, Adh2, OsADH2,ant, ricANC1, ANC1
221		Kuriyama, H. and M. Kudo	Complementary genes Ph and Bh controlling ripening-black coloration of rice hulls and their geographical distribution.	Japan. J. Breed.	17(1)	13-19.	1967	BHC	Ph=Bhc(Po), Bhc, Po, Ph, Bh3, PPO, Phr1, BH1
222		Kwak, T.S., B.S. Vergara, J.S. Nanda and W.R. Coffman	Inheritance of seedling cold tolerance in rice.	SABRAO Journal	16	83-86.	1984	CTS1	Cts1
223		Lakshminarayana, A. and G.S. Khush	New genes for resistance to the brown planthopper in rice.	Crop Sci.	17(1)	96-100.	1977	BPH1,BPH4,BPH3	Bph1,bph4,Bph3
224		Lee, H.Y. and T. Kameya	Selection and characterization of a rice mutant resistant to 5-methyltryptophan.	Theor. Appl. Genet.	82	405-408.	1991	R5MT	R5MT*
225		Li, T., T. Takano, Y. Nagamura and G. Takeda	Linkage analysis of rice lactate dehydrogenase gene.	RGN	11	109-111.	1994	WX1,LDH*	wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx,Ldh*, Ldh1
226		Li, T., T. Takano, Y. Nagamura and G. Takeda	Characterization and RFLP mapping of rice lactate dehydrogenase gene.	Breeding Science	44(Suppl. 1)	19	1994	WX1,LDH*	wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx,Ldh*, Ldh1
227		Liang, C.Z., M.H. Gu, X.B. Pan, G.H. Liang and L.H. Zhu	RFLP tagging of a new semidwarfing gene in rice.	Theor. Appl. Genet.	88	898-900.	1994	SDG	sdg*, sd11
228		Librojo, A.L. and G.S. Khush	Chromosomal location of some mutant genes through the use of primary trisomics in rice.	Rice Genetics. IRRI, Manila, Philippines.		249-255.	1986	EUI1,MP1,AUL,BC4,CHL7,MP2,YGL	eui1, GA16,17ox, CYP714D1, EUI, CYP714D1/EUI, OsEUI, LG5, OsLG5,mp1,aul,bc4, bc-4,chl7,mp2,ygl*, ygl
229		Lin, S.Y. and H. Ikehashi	A gamete eliminator indicated by Est-9 in chromosome 7 of rice (Oryza sativa L.).	Japan. J. Breed.	41(Suppl. 1)	350-351.	1991	EST9,GA11	Est9 (Est c1), Est8, Estcl, Est c1, Est_9,ga11
230		Lin, S.Y. and H. Ikehashi	A gamete abortion locus detected by segregation distortion of isozyme locus Est-9 in wide crosses of rice       (Oryza sativa L.).	Euphytica	67	35-40.	1993	GA11,EST9	ga11,Est9 (Est c1), Est8, Estcl, Est c1, Est_9
231		Lin, S.Y., Y. Nagamura, N. Kurata, M. Yano, Y. Minobe and T. Sasaki	DNA markers tightly linked to genes, Ph, alk and Rc.	RGN	11	108-109.	1994	RC,ALK,BHC	Rc, OsbHLH017, OsbHLH17, SD7-1, qSD7-1/qPC7, OsGL3C, GL3C,alk, SSII-3, OsSSIIa, OsSSII-3, SSIIa, SSS2A, OsSSIIaChr6, SS2a,Ph=Bhc(Po), Bhc, Po, Ph, Bh3, PPO, Phr1, BH1
232		Lin, X., G. Yu, D. Zhang, Y. Xie and Y. Chen	Chromosomal location of genes for bacterial blight resistance found in Yunnan variety, Donguno.	RGN	8	124	1991	XA K*,XA A*	xa k*, XAK, xak*, xak,Xa a*, XAA, Xaa*, Xaa
233		Ling, D.H., C.Y. Lieng, R. Ma and M.F. Chen	Somaclonal male-sterile mutants in Indica rice.	S. Iyama and G. Takeda (eds.), Proc. 6th Internat. Congress of SABRAO.	II	737-740.	1989	[CMS-54257]	[cms-54257]*, [cms-54257]
234		Liu, A., Q. Zhang and H. Li	Location of a gene for wide-compatibility in the RFLP linkage map.	RGN	9	135-136.	1992	S5,WC	S5-3, S5-4,Wc*(S5-n,S-n), Wc1
235		Lu, Y.G. and G.Q. Zhang	Breeding for an isogenic restorer line of CMS Zhen-shan 97A.	RGN	3	89	1986	RF4,RF3	Rf4* (R1, Rf1), R1, Rf1, RfWA1, Rf4,Rf3* (R2, Rf2), Rf2, R2, Rf3, Rf-3
236		Mackill, D.J. and J.N. Rutger	The inheritance of induced-mutant semidwarfing gene in rice.	J. Hered.	70(5)	335-341.	1979	SD4	sd4
237		Mackill, D.J. and J.M.Bonman	Inheritance of blast resistance in near-isogenic lines of rice.	Phytopathology	82	746-749.	1992	PITA,PI3,PIZ,PI30,PI1,PI5-2	Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30, Trx30,Pi3, Pi5, Pi-3(t), Pi-3, Pi3(t), Pi5(t), Pi5-1, Pii,  RMg22, RMg21,Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2,Pi-30(t), Pi30(t),Pi1, Pi-1, Pi1-5C, Pi1-6C,Pi3, Pi5, Pi-3(t), Pi-3, Pi3(t), Pi5(t), Pi5-2, Pii,  RMg22, RMg21
238		Mackill, D.J., S.R.M. Pinson and J.N. Rutger	Frizzy panicle, an EMS-induced mutant in the Japonica cultivar M-201.	RGN	9	100-102.	1992	FZP	fzp*, fzp, OsBD1, BD1, OsERF#078, OsERF078, OsERF78, ERF78, AP2/EREBP#133, AP2/EREBP133, BFL1, SGDP7, OsSGDP7
239		Mackill, D.J., M.A. Salam, Z.Y. Wang and S.D. Tanksley	A major photoperiod-sensitivity gene tagged with RFLP and isozyme markers in rice.	Theor. Appl. Genet.	85	536-540.	1993	PGI2,PS	Pgi2(Pgib), Pgib, Pgi_2, Pgi2, GPI-B, PGI-B, PHI-B, Pgi-b, PGI-b, SIS, OsSIS, OsPGI2,PS*
240		Maeda, H., I. Takamure, T. Kinoshita and O. Kamijima	Identification of RAPD markers linked to the semidwarfing gene at the sd-1 locus in rice.	Japan. J. Breed.	43(Suppl. 2)	91	1993	SD1	sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2, OsPHQ1, OsPHq1, PHq1
241		Maeda, H., T. Ishii, I. Takamure, T. Kinoshita and O. Kamijima	Molecular mapping of semidwarfing gene, sd-1, using RAPD and RFLP markers.	Breeding Science	45(Suppl. 1)	93	1995	SD1	sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2, OsPHQ1, OsPHq1, PHq1
242		Maekawa, M.	Studies on genetical difference between distantly related rice varieties.	Mem. Fac. Agr. Hokkaido Univ.	13(2)	146-177.	1982	RF1,RF2,RF1D,RF1C,BHC,RF1B,GA7,ST4,GA6,BHA,BHB	Rf1 (Rf-1), rf-1, PPR791, PPR8-1, Rf-1, Rf1, Rf-1A, Rf5, Rf1a, RF5, Rf5(t)*(Rf(t)*), RF1A, PPR6, PLS31, OsPLS31,Rf2 (Rfx), Rfx, Rf2,Rf-1D,Rf-1C,Ph=Bhc(Po), Bhc, Po, Ph, Bh3, PPO, Phr1, BH1,RF1b, Rf-1B, PPR7,ga7,st4(ws2), ws2, st4,ga6,Bha(Bh1), Bha, Bh1,Bhb(Bh2), Bhb, Bh2
243		Maekawa, M.	Location of floury endosperm gene in the second linkage group.	RGN	2	57-58.	1985	FLO2	flo2, flo3(t), Osflo2, Osflo3(t), Osflo-2, flo-2, FLO2-1, FLO2-2
244		Maekawa, M.	Allelism test for the genes responsible for sheathed panicle.	RGN	3	62-63.	1986	SHP2,SHP1(EX)	shp2,Shp1(Ex), Ex, Shp1
245		Maekawa, M.	A new zabra-leaf mutant obtained from anther culture.	RGN	4	79-80.	1987	Z6	z6
246		Maekawa, M.	A new leaf stripe gene st-5, its linkage with d-2 and the location of gene P in the second linkage group.	RGN	5	85-87.	1988	ST5	st5
247		Maekawa, M.	A new allele at the lg locus expressing short ligules.	RGN	5	87-89.	1988	LG	lg
248		Maekawa, M. and F. Kita	Interaction of eui gene for the elongation of uppermost internode and some genes for the elongation of internode.	Japan. J. Breed.	33(Suppl. 1)	124-125.	1983	EUI1	eui1, GA16,17ox, CYP714D1, EUI, CYP714D1/EUI, OsEUI, LG5, OsLG5
249		Maekawa, M. and F. Kita	New gametophyte genes located in the third linkage group (Chromosome 3) of rice.	Japan. J. Breed.	35(1)	25-31.	1985	GA9,GA7	ga9,ga7
250		Maekawa, M. and T. Inukai	Genes linked with d-2 in rice.	Japan. J. Breed.	42(Suppl. 2)	212-213.	1992	GA12,SHP5	ga12,shp5(t), shp5
251		Maekawa, M. and T. Inukai	Hybrid sterility caused by anther indehiscence between distantly related rice varieties.  In Toward enhanced and sustainable agricultural productivity in 2000's: Breeding research and biotechnology. 	Proc. 7th Intern. Congress SABRAO & Intern Symp. WSAA, Taichung District Agricultural Improvement Station, Taiwan, R.O.C.	I.	85-91.	1994	SB,SC,SA	S B(t)*, S-B(t),S C(t)*,S A(t)*, S-A(t)
252		Maekawa, M., T. Kinoshita and M. Takahashi	A new gametophyte gene in the second linkage group of rice (Genetical studies on rice plant, LXXVI).	J. Fac. Agr. Hokkaido Univ.	60(2)	107-114.	1981	GA6	ga6
253		Maekawa, M., T. Maekawa, N. Shinbashi and T. Kinoshita	Allelism of genes for elongation of uppermost internode from two different sources.	RGN	6	101-103.	1989	EUI1	eui1, GA16,17ox, CYP714D1, EUI, CYP714D1/EUI, OsEUI, LG5, OsLG5
254		Maekawa, M., T. Inukai and N. Shinbashi	A new gene for leaf stripe (st-6) found in linkage group 3.	RGN	7	108-109.	1990	HG,ST6	Hg, Fg,st6(t), st6
255		Maekawa, M., T. Inukai and N. Shinbashi	Spikelet sterility in F1 hybrids between rice varieties Silewah and Hayakogane.	Japan. J. Breed.	41(2)	359-363.	1991	SA,SB	S A(t)*, S-A(t),S B(t)*, S-B(t)
256		Maekawa, M., I. Takamure and T. Kinoshita	Gene mapping of some morphological traits and chlorophyll deficiency in rice.	Rice Genetics. II. IRRI, Manila, Philippines.		111-120.	1991	DL,RFS,LHS1,SHP2,SHP1(EX),LKF,LKI1,RCN2,ST5,LG,ZN,RCN1,Z6,DP	OsDL, dl(lop), lop, dl, dl1, OsDRPq3, DRPq3,rfs, cul7, OsRFS, OsCHR729, CHR729, CHR4, OsCHR4, CRL6, OsCRL, OsCHR4/CHR729, PKR1, OsPHD32, PHD32,OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO, OsLHS1, OsLG3b, LG3b, qLGY3, LGY3, DLN80, OsDLN80, OLR, OsOLR, GW3p6, OsGW3p6, OsMADS1GW3p6, MADS1GW3p6, qLGY3/OsLG3b/GW3p6,shp2,Shp1(Ex), Ex, Shp1,Lk f, Lkf,lk i1, lki1, lk-i-1,rcn2,st5,lg,zn,rcn1,z6,dp(t)*, dp3, dp
257		Malik, S.S. and G.S. Khush	A new allele of Amp-4 in a traditional rice cultivar.	RGN	11	88-89.	1994	AMP4	Amp4
258		Martinez, C,R. and G.S. Khush	Sources and inheritance of resistance to brown planthopper in some breeding lines of rice.	Crop Sci.	14(2)	264-267.	1974	IBPH1	IBph1
259		Maruyama, K., H. Araki and H. Kato	Thermosensitive genetic male sterility induced by irradiation.	Rice Genetics. II. IRRI, Manila, Philippines.		227-235.	1991	TMS2,TMS2	tms2, ms81, tms-2,tms2
261		Matsunaka, S.	Utilization of artifical mutant rice for fundamental researches of herbicidal mechanisms.	JARQ	6	189-194.	1972	PRS	prs
262		Matsuo, T., M. Yano, H. Satoh and T. Omura	Location of gene shr-1 on chromosome 3.	RGN	3	60-61.	1986	SHR1,RL4	shr1, sh1, shr,rl4(rl2), rl2, rl4, cul11
263		Matsuo, T., M. Yano, N. Iwata and T. Omura	Gene shr-2 located on chromosome 12.	RGN	3	61-62.	1986	SHR2	shr2, sh2
264		Matsuura, S., M. Yano and A. Saito	Linkage analysis of two ribosomal DNA genes in rice.	Japan. J. Breed.	41(Suppl 1)	320-321.	1991	R45S1,R45S2	R45s1*(rDNA1), rDNA1, r45s, R45s1,R45s2*(rDNA2), rDNA2, R45s2
265		Matsuura, S., M. Yano and A. Saito	Location of two rDNA genes by linkage analysis in rice.	RGN	8	136-139.	1991	R45S1,R45S2	R45s1*(rDNA1), rDNA1, r45s, R45s1,R45s2*(rDNA2), rDNA2, R45s2
266		McCouch, S.R., G. Kochert, Z.H. Yu, Z.Y. Wang, G.S. Khush, W.R. Coffman  and S.D. Tanksley	Molecular mapping of rice chromosomes.	Theor. Appl. Genet.	76	815-829.	1988	R45S1,R5S1	R45s1*(rDNA1), rDNA1, r45s, R45s1,R5s1*, r5s, R5s1
267		McCouch, S.R., M.L. Abenes, R. Angeles, G.S. Khush and S.D. Tanksley	Molecular tagging of a recessive gene, xa-5, for resistance to bacterical blight of rice.	RGN	8	143-145.	1991	XA5	xa5, xa-5, Xa5, TFIIAy, OsTFIIAgamma5, TFIIAgamma5, OsTFIIAgamma5/Xa5
268		McCouch, S.R., G.S. Khush and S.D. Tanksley	Tagging genes for disease and insect resistance via linkage to RFLP markers.	Rice Genetics. II. IRRI, Manila, Philippines.		443-449.	1991	XA4,WBPH1	Xa4, Xa4(Xa4a), Xa-4, Xa4-a, WAK, wak, xa4,Wph1(Wbph), Wbph1, Wph1
269		McCouch, S.R., R.J. Nelson, J. Tohme and R.S. Zeigler	Mapping of blast genes in rice.	In Rice Pyricularia oryzae Disease. R.S. Zeigler et al. (eds.), C.A.B. International, Wallingford, UK.		167-186.	1994	PI6	Pi6(t)*, Pi6, Pi-6(t), pi6(t)
270		McKenzie, K.S. and J.N. Rutger	A new semidwarf mutants in a large grain rice cultivar.	Crop Sci.	26(1)	81-84.	1986	SD5	sd5
271		Mew, T.V., A.S. Parco, S. Hittalmani, T. Inukai, R. Nelson, R.S. Zeigler and N. Huang	Fine-mapping of major genes for blast resistance in rice.	RGN	11	126-128.	1994	PITA,PI30,PIZ,PI1	Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30, Trx30,Pi-30(t), Pi30(t),Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2,Pi1, Pi-1, Pi1-5C, Pi1-6C
272		Min, S., X. Li, Z. Xiong and G. Hu	Genetic analysis of resistance to whitebacked planthopper Sogatella furcifera Horvath in rice.	Rice Genetics. II. IRRI, Manila, Philippines.		263-267.	1991	WPH6(T)*	Wph6(t)*, Wph6(t), Wph6
273		Mir, G.N. and G.S. Khush	Genetics of resistance to bacterial blight in rice (Oryza sativa L.).	Indian J. Genet. & Plant Breed.	51(1)	72-78.	1991	XA13	xa13, Xa13, Os8N3, Os-8N3, 8N3, OsSWEET11, SWEET11, OsSWEET11/Xa13, Xa13/Os8N3/SWEET11, Os8N3/Xa13, OsSWEET11/Os8N3, OsSWEET11a, SWEET11a
274		Misro, B.	Linkage studies in rice (Oryza sativa L.). 10. Identification of linkage groups in indica rice.	Oryza Cuttack	18(4)	185-195.	1981	BD2,PLA1,PC,PJ,PJB,PLG,PLM,PM,PMR,PSH,BD1,PAU,PU,PX,PD	bd2,pla1, OsPLA1, plt1, CYP78A11,Pc,Pj,Pjb,Plg,Plm(Pla), Pla, Plm,Pm(Sp), Sp, Pm,Pmr(Plm), Plm, Pmr,Psh,bd1,Pau,Pu,Px,Pd, Pd(a), Pd(b)
275		Mitra, S.K. and P.M. Ganguli	Some observations on the characters of wild rice hybrids.	Indian J. Agr. Sci.	2(3)	271-279.	1932	SPR2	Spr2
276		Mitsunaga, S., T. Tashiro and J. Yamaguchi	Identification and characterization of gibberellin-insensitive mutants from among dwarf mutants of rice.	Theor. Appl. Genet.	87	705-712.	1994	D1	d1, GPA1, GA1, OsGA1, RGA1, dwf1, XA7, RGA, D1/RGA1, D89, TGW5, OsTGW5, SRG5, OsSRG5
277		Miyamoto, M., M. Saito, I. Ando, O. Kamada, T. Akatuka and S. Kawasaki	High resolution mapping of rice blast resistance gene Pi-b.	Japan. J. Breed.	43(Suppl 2)	220	1993	PIB	Pi b(Pi s), Pis, Pib, Pi-s, Pi-hy
278		Miyamoto, M., K. Rybka, Y. Tanaka, M. Kataoka, I. Ando and S. Kawasaki	Physical mapping of the rice blast resistance genes by using restriction enzymes.	Breeding Science	44(Suppl. 2)	191	1994	PITA	Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30, Trx30
279		Mohan, M., S. Nair, J.S. Bentur, U.P. Rao and J. Bennett	RFLP and RAPD mapping of the rice Gm2 gene that confers resistance to biotype 1 of gall midge (Orseolia oryzae).	Theor. Appl. Genet.	87	782-788.	1994	GM2	Gm2, Gm-2, GM-2
280		Mori, K.	Inheritance of susceptible mutant in rice plant to herbicide bentazon.	Japan. J. Breed.	34(Suppl. 1)	340-341.	1984	BZS	bzs, bol
281		Mori, K. and M. Takahashi	Differentiation of multiple alleles for anthocyanin color character of apiculus in Indica rice varieties.-Genetical studies on rice plant, LXXXI-.	Japan. J. Breed.	31(3)	226-238.	1981	A,P	A(Sp), Sp, Ap,P(Pa,Pb,Pc), A, Pa
282		Mori, K., T. Kinoshita and M. Takahashi	Linkage relationships of genes for some mutant characters of rice kept in Kyushu University. -Genetical studies on rice plant, LV-.	Mem. Fac. Agr. Hokkaido Univ.	8(4)	377-385.	1973	DL,NAL1,NAL2,RL2,DP2	OsDL, dl(lop), lop, dl, dl1, OsDRPq3, DRPq3,nal1, cul1, GPS, SPIKE, SPIKE/LSCHL4/NAL1/GPS, SPIKE/NAL1, LSCHL4, OsNAL1,nal2, nal3, cul2, OsWOX3A, WOX3A, Os NS, NS, OsNS, OsWOX3, OsNS1/OsNS2, OsPRS,rl2, cul9,dp2
283		Mori, K., T. Kinoshita and M. Takahashi	Segregation distortion and its causation of an endosperm character in crosses of distantly related rice varieties.-Genetical studies on rice plant, LVIII-.	Mem. Fac. Agr. Hokkaido Univ.	9(1)	74-86.	1973	GA4,GA5	ga4(gaA), gaA, ga4,ga5(gaB), gaB, ga5
284		Mori, K., T. Kinoshita and M. Takahashi	The new distribution gene for anthocyanin coloration, Pin1 found in Indica rice. Genetical studies on rice plant LXXV.	Japan. J. Breed.	31(1)	49-56.	1981	PIN1	Pin1
285		Morinaka, T., K. Toriyama and Y. Sakurai	Inheritance of resistance to black streaked dwarf disease in rice.	Japan. J. Breed.	19(2)	74-78.	1969	BSV	Bsv(Bs), Bs, Bsv
286		Morinaka, T., K. Toriyama and Y. Sakurai	Inheritance of resistance to yellow dwarf disease in rice.	Japan. J. Breed.	20(1)	22-28.	1970	YDV	Ydv
287		Morishima, H.	Isozyme.	Exploitation and identification of rice gene resources. N. Iwata, ed. (Report of Grant-in-Aid for Scientific Research).		112-119.	1990	NAL3,GDH1,PGD2,RL3,D33	nal3(nal2), nal2, nal3, cul3, OsWOX3A, WOX3A, WOX3, OsWOX3, OsNS, OsNS1/OsNS2, OsPRS,Gdh1,Pgd2,rl3(rl1), rl1, rl3, cul10,d33(d B), dB, dwf29, d33
288		Morishima, H.	Association between Pox-1 variation and seed productivity potential in wild rice.	Rice Genetics. II. IRRI, Manila, Philippines.		1-9.	1991	POX1	Pox1(Px,Pe), PRX74, Px, Pe, Pox1, prx74
289		Morishima, H. and J.C. Glaszmann	Current status of isozyme gene symbols.	RGN	7	50-57.	1990	SUD1,SUD2,SUD3,TPIL(T)*	Sud1(t)*, Sud1(t), Sud1,Sud2(t)*, Sud2(t), Sud2,Sud3(t)*, Sud3(t), Sud3,Tpil(t)*, Tpi1(t), Tpi1
290		Murai, M., N. Shinbashi, A. Kusutani, S. Hirose, I. Takamure and T. Kinoshita	Identification of dwarf genes in rice lines, Yukara dwarf and Fukei 71, and its response to environmental factors.	Japan. J. Breed.	40(1)	33-45.	1990	D12	d12(d50), dwf11, d50, d12, d32, F71, DMT9
292		Nadaf, S.K., J.V. Goud and R. Parameswarappa	Genetic studies in rice   (Oryza sativa L.). XVI. Inheritance of panicle type and spreading panicle branch.	Indian J. Genet. & Plant Breed.	52(4)	411-415.	1992	LAX1,ISPR1,ISPR2,SPRA,SPRB	lax, lax(lx), lx, OsbHLH123, bHLH123, OsLAX1, BOS1, OsBOS1,ISpr1*, ISpr1,ISpr2*, ISpr2,Spra*,Sprb*
293		Nagai, I. and S. Hara	On the inheritance of leaf spot disease in rice.	Jpn. J. Genet.	5(3, 4)	140-144.	1930	HE	He
294		Nagamatsu, T. and T. Omura	Linkage study of the genes belonging to the first chromosome in rice.	Japan. J. Breed.	12(4)	231-236.	1962	ST1,DP1	st1(ws1), ws1, st1, OsST1, RNRS1, OsRNRS1, rnrs1, RNRS, SDL/RNRS1, SDL, OsSDL, NSL2, OsNSL2,dp1, pa, DP1/PAL1, PAL1, OsDP1, OsAHL11, AHL11
295		Nagamine, T.	Genic control of tolerance to chilling injury at seedling stage in rice, Oryza sativa L.	Japan. J. Breed.	41(1)	35-40.	1991	CTS2	Cts2(t), Cts2
296	14943677	Nagao, S.	Genic analysis and linkage relationship of characters in rice.	Adv. Genet.	4	181-212.	1951	BC1,A,D1,RC,RD,CLW,D3,CPS,D2,PN,G1,D5,C,TRI,GL1,ST2,PL,D4,NL1,FS1,D6,LA,PR	bc1, bc-1, OsBC1, CWA1, FP1, OsPCS3, PCS3,A(Sp), Sp, Ap,d1, GPA1, GA1, OsGA1, RGA1, dwf1, XA7, RGA, D1/RGA1, D89, TGW5, OsTGW5, SRG5, OsSRG5,Rc, OsbHLH017, OsbHLH17, SD7-1, qSD7-1/qPC7, OsGL3C, GL3C,Rd, DFR, OsDFR, OS-DFR, OsDFR1, DFR1, DFR-1,clw,d3, dwf3, D3/OsMAX2, Os_F0760, SOL1, OsORE9, ORE9, MAX2, OsRFPH2-10, RFPH2-10, OsD3,  OsFBL27, FBL27,cps,d2, dwf2, CYP90D2, D2/CYP90D2, OsD2, SMG11, OsSMG11, D2/SMG11, OsD2a, OsD2b,Pn,g1 (lng), lng, g1, ELE, Os ELE, OsG1, G1/ELE, LSL2, OsLSL2,d5, dwf5,C, Cp, OsC1, Os-C1, C1, OsMyb6, Myb6, OsPL6, PL6, OsGL1E, GL1E, Os2R_MYB63, 2R_MYB63, OsC1PLSr, C1PLSr,tri,gl1, NUDA/GL-1, NUDA/GL1, NUDA, GL-1, OsWOX3B, OsWOX2, OsWOX3, Os WOX3, WOX3B, WOX2, WOX3, LSY1, OsLSY1, DEP, OsDEP,st2(gw), gw, st2,Pl, Pl1,d4, dwf4,nl1, OsGATA15, GATA15, OsNL1,fs1,d6(d34), d34, dwf6,la,Pr(Rp), Rp, Pr
297		Nagao, S. and M. Takahashi	Some genes responsible for yellow, brown and black color glume. -Genetical studies on rice plant, XVI-.	Japan. J. Breed.	4(1)	25-30.	1954	BHC,BHA,BHB,IBF	Ph=Bhc(Po), Bhc, Po, Ph, Bh3, PPO, Phr1, BH1,Bha(Bh1), Bha, Bh1,Bhb(Bh2), Bhb, Bh2,IBf
298		Nagao, S. and M. Takahashi	Trial construction of twelve linkage groups in Japanese rice. (Genetical studies on rice plant, XXVII).	J. Fac. Agr. Hokkaido Univ.	53(1)	72-130.	1963	G1,PR,RC,LG,C,AN2,D3,GH1,LAX1,IPL1,SP1,ST2,GL1,RI,WX1,D4,D2,FS1,CL,HLA,UR1,D7,D6,IBF,DN1,SH1,LA,WH,P,A,PL,BC1,RD,NL1,BHC,D1,BF,SUG1,PN,D5,BL1,HG,AN3,AN1,HLB,D11	g1 (lng), lng, g1, ELE, Os ELE, OsG1, G1/ELE, LSL2, OsLSL2,Pr(Rp), Rp, Pr,Rc, OsbHLH017, OsbHLH17, SD7-1, qSD7-1/qPC7, OsGL3C, GL3C,lg,C, Cp, OsC1, Os-C1, C1, OsMyb6, Myb6, OsPL6, PL6, OsGL1E, GL1E, Os2R_MYB63, 2R_MYB63, OsC1PLSr, C1PLSr,An2,d3, dwf3, D3/OsMAX2, Os_F0760, SOL1, OsORE9, ORE9, MAX2, OsRFPH2-10, RFPH2-10, OsD3,  OsFBL27, FBL27,gh1, hg,lax, lax(lx), lx, OsbHLH123, bHLH123, OsLAX1, BOS1, OsBOS1,IPl1,sp, SP, OsNPF4.1, NPF4.1, OsSP1,st2(gw), gw, st2,gl1, NUDA/GL-1, NUDA/GL1, NUDA, GL-1, OsWOX3B, OsWOX2, OsWOX3, Os WOX3, WOX3B, WOX2, WOX3, LSY1, OsLSY1, DEP, OsDEP,ri,wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx,d4, dwf4,d2, dwf2, CYP90D2, D2/CYP90D2, OsD2, SMG11, OsSMG11, D2/SMG11, OsD2a, OsD2b,fs1,Cl,Hla, Hl1,Ur1,d7, dwf7,d6(d34), d34, dwf6,IBf,Dn1,sh1,la,Wh, Hw,P(Pa,Pb,Pc), A, Pa,A(Sp), Sp, Ap,Pl, Pl1,bc1, bc-1, OsBC1, CWA1, FP1, OsPCS3, PCS3,Rd, DFR, OsDFR, OS-DFR, OsDFR1, DFR1, DFR-1,nl1, OsGATA15, GATA15, OsNL1,Ph=Bhc(Po), Bhc, Po, Ph, Bh3, PPO, Phr1, BH1,d1, GPA1, GA1, OsGA1, RGA1, dwf1, XA7, RGA, D1/RGA1, D89, TGW5, OsTGW5, SRG5, OsSRG5,Bf,Su g1,Pn,d5, dwf5,bl1,Hg, Fg,An3,An1,Hlb, Hl2,d11(d8), dwf10, d8, D11/CYP724B1, d11, CYP724B1, GNS4, OsD11, PMM1, OsPMM1, PMM1/D11, NBG4, OsCPB1, CPB1, CPB1/D11
299		Nagao, S., M. Takahashi and T. Kinoshita	Genetical studies on rice plant, XXV. Inheritance of three morphological characters, pubescence of leaves and floral glumes, and deformation of empty glumes.	J. Fac. Agr. Hokkaido Univ.	51(2)	299-314.	1960	SUG1,HG,HLA,D7	Su g1,Hg, Fg,Hla, Hl1,d7, dwf7
300		Nagao, S., M. Takahashi and T. Kinoshita	Genetical studies on rice plant, XXVI. Mode of inheritance and causal genes for one type of anthocyanin color character in foregin rice varieties.	J. Fac. Agr. Hokkaido Univ.	52(1)	20-50.	1962	PL,IPL3,IPL1,IPL2	Pl, Pl1,IPl3,IPl1,IPl2
301		Nagao, S., M. Takahashi and K. Morimura	Genetical studies on rice plant, XXVIII. Causal genes and their linkage relationships of some morphological characters introduced from foreign rice varieties.	Mem. Fac. Agr. Hokkaido Univ.	5(2)	89-96.	1964	RL1,DRP1,BL2,CL	rl1, cul8,drp1,bl2(blm), blm, bl2,Cl
302		Nakagahra, M.	Genetic mechanism on the distorted segregation of marker genes belonging to the eleventh linkage group in cultivated rice.	Japan. J. Breed.	22(4)	232-238.	1972	GA2,GA3	ga2,ga3
303		Nakagahra, M.	Genic analysis for esterase isoenzymes in rice cultivars.	Japan. J. Breed.	27(2)	141-148.	1977	EST2,EST1,EST3	Est2, Est_2,Est1,Est3
304		Nakagahra, M.	New distorted inheritance of the markers located on chromosome 3 in wide crosses of rice, Oryza sativa L.	Bull. Natl. Inst. Agric. Sci., Ser.D	32	15-44.	1981	GA8	ga8
305		Nakagahra, M.	Geographical distribution of esterase genotypes of rice in Asia.	RGN	1	118-119.	1984	EST2	Est2, Est_2
306		Nakagahra, M.	Exploitation of isozyme genes and their mapping.	Exploitation and identification of rice gene resources. N. Iwata, ed. (Report of Grant-in-Aid for Scientific Research).		120-129.	1990	AMP1,EST1,EST3,SDH1	Amp1(Lap1,LapF), LapF, Lap1, Amp1,Est1,Est3,Sdh1, Skd
307		Nakagahra, M. and K. Hayashi	Detection of esterase isozyme loci of Oryza sativa L.	Japan. J. Breed.	26(Suppl .1)	114-115.	1976	GA3,GA4,GA1,EST2,GA2	ga3,ga4(gaA), gaA, ga4,ga1,Est2, Est_2,ga2
308		Nakagahra, M., T. Omura and N. Iwata	Gametophyte genes and their loci on the eleventh linkage group of cultivated rice.	Japan. J. Breed.	22(6)	305-312.	1972	GA2,GA3	ga2,ga3
309		Nakagahra, M., T. Omura and N. Iwata	New certation gene on the first linkage group found by inter-subspecific hybridization of cultivated rice.	J. Fac. Agr. Kyushu Univ.	18	157-167.	1974	GA4	ga4(gaA), gaA, ga4
310		Nakai, H.	Genetic analysis of the induced mutants of rice resistant to bacterial leaf blight.	S. Iyama and G. Takeda (eds.), Proc. 6th Internat. Congress of SABRAO.	II	777-780.	1989	XA NM(T)*	xa nm(t)*
311		Nakamura, A., H. Hirano and F. Kikuchi	A protein gene Srp(t) linked with a semidwarfing gene sd-1 in rice (Oryza sativa L. ).	Japan. J. Breed.	41(3)	517-521.	1991	GLU1	Glu1(Srp1, Gt2), Srp, Gt2, Glu1
312		Nakamura, A., H. Hirano and F. Kikuchi	Identification and genetic analysis of semidwarfism-related proteins in rice (Oryza sativa L. ).	Theor. Appl. Genet.	81(3)	376-380.	1991	GLU1	Glu1(Srp1, Gt2), Srp, Gt2, Glu1
313		Nakamura, A., S. Komatsu, B.S. Xia and H. Hirano	Linkage analysis of gene loci for seed glutelin (Glu-1), semidwarf (sd-1) and shattering habit  (sh-2) in rice (Oryza sativa L.).	Breeding Science	45	185-188.	1995	SD1,GLU1,SH2	sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2, OsPHQ1, OsPHq1, PHq1,Glu1(Srp1, Gt2), Srp, Gt2, Glu1,sh2
314		Nakamura, I.	A rice mutant showing accelerated internode overgrowth.	RGN	9	61-62.	1992	AO	ao
315		Nakamura, Y., Y. Nagamura, N. Kurata and Y. Minobe	Linkage localization of the starch branching enzyme I (Q-enzyme 1) gene in rice.	Theor. Appl. Genet.	89	859-860.	1994	SBE1	sbe1, Rbe1. Sbe1, sbe1*(QEI), RBE1, BEI, SBE I, QEI, OsBEI, BE1, OsSBE1, OsSBEI, SBEI
316		Nakazaki, T., H. Yamagata, M. Yamamoto, K. Ichitani and T. Tanisaka	RFLP analysis for anthocyanin pigmentation genes of a mutant line in rice.  In Toward enhanced and sustainable agricultural productivity in 2000's: Breeding research and biotechnology. 	Proc. 7th Intern. Congress SABRAO & Intern Symp. WSAA, Taichung District Agricultural Improvement Station, Taiwan, R.O.C.	II.	459-465.	1994	C	C, Cp, OsC1, Os-C1, C1, OsMyb6, Myb6, OsPL6, PL6, OsGL1E, GL1E, Os2R_MYB63, 2R_MYB63, OsC1PLSr, C1PLSr
317		Nemoto, H., R. Ikeda and C. Kaneda	New genes for resistance to brown planthopper, Nilaparvata lugens Stal, in rice.	Japan. J. Breed.	39(1)	23-28.	1989	BPH9,BPH8	Bph9, BPH9/26, Bph26(t), BPH26, Bph18(t), BPH18,bph8
318		Nishio, T. and S. Iida	Mutant having a low content of 16-kDa allergenic protein in rice (Oryza sativa L. ).	Theor. Appl. Genet.	86	317-321.	1993	FLO	flo(t)*, flo3
320		Noda, T. and A. Ohuchi	A new pathogenic race of Xanthomonas campestris pv. oryzae and inheritance of resistance of differential rice variety, Te-tep to it.	Ann. Phytopath. Soc. Japan	55	201-207.	1989	XA16	Xa16
321		Nozue, F., M. Umeda, Y. Nagamura, Y. Minobe and H. Uchimiya	Molecular cloning and expression analysis of rice phosphoglucose (PGI) genes.	Breeding Science	44(Suppl. 1)	29	1994	PGI1,PGI2	Pgi1(Pgia), Pgia, Pgi_1, Pgi1, GPI-A, PHI-A, Pgi-a, PGI-a,Pgi2(Pgib), Pgib, Pgi_2, Pgi2, GPI-B, PGI-B, PHI-B, Pgi-b, PGI-b, SIS, OsSIS, OsPGI2
322		Oba, S., F. Kikuchi and K. Maruyama	Genetic analysis of semidwarfness and grain shattering of Chinese rice varity Ai-Jio-Nan-Te.	Japan. J. Breed.	40(1)	13-20.	1990	SH2	sh2
323		Ogawa, T.	Performance of the resistance gene, Xa-7 to Philippine and Japanese races of bacterial leaf blight pathogen in rice.	Breeding Science	45(Suppl. 1)	208	1995	XA7	Xa7
324		Ogawa, T. and T. Yamamoto	Inheritance of resistance to bacterial blight in rice.	Rice Genetics. IRRI, Manila, Philippines.		471-479.	1986	XA3,XA11	Xa-3, Xa3 (Xa4b, Xa6, Xa9, Xa w), Xa3, Xaw, Xa6, Xa9, Xa4-b, XA26, Xa26(t), Xa26(t)*, Xa26, RKb, MRKb, MRKB, TRKb, Xa3/Xa26,Xa11(Xa pt), Xa11, Xapt
325		Ogawa, T., T. Morinaka, K. Fujii and T. Kimura	Inheritance of resistance of rice varieties Kogyoku and Java 14 to bacterial group V of Xanthomonas oryzae.	Ann. Phytopath. Soc. Japan	44(2)	137-141.	1978	XA3,XA12	Xa-3, Xa3 (Xa4b, Xa6, Xa9, Xa w), Xa3, Xaw, Xa6, Xa9, Xa4-b, XA26, Xa26(t), Xa26(t)*, Xa26, RKb, MRKb, MRKB, TRKb, Xa3/Xa26,Xa12(Xa kg), Xakg, Xa12
326		Ogawa, T., T. Yamamoto, G.S. Khush and T.W. Mew	The relationship between genes Xa-3 and Xa-6 for resistance to rice bacterial blight.	RGN	3	79-80.	1986	XA4,XA3	Xa4, Xa4(Xa4a), Xa-4, Xa4-a, WAK, wak, xa4,Xa-3, Xa3 (Xa4b, Xa6, Xa9, Xa w), Xa3, Xaw, Xa6, Xa9, Xa4-b, XA26, Xa26(t), Xa26(t)*, Xa26, RKb, MRKb, MRKB, TRKb, Xa3/Xa26
327		Ogawa, T., T. Yamamoto, G.S. Khush and T.W. Mew	Inheritance of resistance to bacterial blight in Sateng. -A reinvestigation.	RGN	3	80-82.	1986	XA3	Xa-3, Xa3 (Xa4b, Xa6, Xa9, Xa w), Xa3, Xaw, Xa6, Xa9, Xa4-b, XA26, Xa26(t), Xa26(t)*, Xa26, RKb, MRKb, MRKB, TRKb, Xa3/Xa26
328		Ogawa, T., R.E. Tabien, G.A. Busto, G.S. Khush and T.W. Mew	The relationship between Xa-3, Xa-4 and Xa-4b for resistances to rice bacterial blight.	RGN	3	83-84.	1986	XA4,XA3	Xa4, Xa4(Xa4a), Xa-4, Xa4-a, WAK, wak, xa4,Xa-3, Xa3 (Xa4b, Xa6, Xa9, Xa w), Xa3, Xaw, Xa6, Xa9, Xa4-b, XA26, Xa26(t), Xa26(t)*, Xa26, RKb, MRKb, MRKB, TRKb, Xa3/Xa26
329		Ogawa, T., T. Yamamoto, G.S. Khush and T.W. Mew	Relationship among Xa-3, Xa-4 and Xa-4b resistant genes to rice bacterial leaf blight.	Japan. J. Breed.	37(Suppl. 1)	176-177.	1987	XA4,XA3	Xa4, Xa4(Xa4a), Xa-4, Xa4-a, WAK, wak, xa4,Xa-3, Xa3 (Xa4b, Xa6, Xa9, Xa w), Xa3, Xaw, Xa6, Xa9, Xa4-b, XA26, Xa26(t), Xa26(t)*, Xa26, RKb, MRKb, MRKB, TRKb, Xa3/Xa26
330		Ogawa, T., L. Lin, R.E. Tabien and G.S. Khush	A new recessive gene for resistance to bacterial blight of rice.	RGN	4	98-100.	1987	XA13	xa13, Xa13, Os8N3, Os-8N3, 8N3, OsSWEET11, SWEET11, OsSWEET11/Xa13, Xa13/Os8N3/SWEET11, Os8N3/Xa13, OsSWEET11/Os8N3, OsSWEET11a, SWEET11a
331		Ogawa, T., H. Kaku and T. Yamamoto	Resistance gene of rice cultivar, Asaminori to bacterial blight of rice.	Japan. J. Breed.	39(Suppl. 1)	196-197.	1989	XA17	Xa17
332		Ogawa, T., T. Yamamoto, G.S. Khush and T.W. Mew	Genetics of resistance in rice cultivars, Zenith and Cempo Selak to Philippine and Japanese races of bacterial blight pathogen.	Japan. J. Breed.	40(2)	183-192.	1990	XA3	Xa-3, Xa3 (Xa4b, Xa6, Xa9, Xa w), Xa3, Xaw, Xa6, Xa9, Xa4-b, XA26, Xa26(t), Xa26(t)*, Xa26, RKb, MRKb, MRKB, TRKb, Xa3/Xa26
333		Ogawa, T., T. Yamamoto, G.S. Khush and T.W. Mew	Genetics of resistance in rice cultivar, Sateng to Philippine and Japanese races of bacterial blight pathogen.	Japan. J. Breed.	40(3)	329-338.	1990	XA3	Xa-3, Xa3 (Xa4b, Xa6, Xa9, Xa w), Xa3, Xaw, Xa6, Xa9, Xa4-b, XA26, Xa26(t), Xa26(t)*, Xa26, RKb, MRKb, MRKB, TRKb, Xa3/Xa26
334		Ogawa, T., T. Yamamoto, G.S. Khush and T.W. Mew	Genetics of resistance in rice cultivars, IR20 and Semora Mangga to Philippine and Japanese races of bacterial blight pathogen.	Japan. J. Breed.	40(4)	435-447.	1990	XA3	Xa-3, Xa3 (Xa4b, Xa6, Xa9, Xa w), Xa3, Xaw, Xa6, Xa9, Xa4-b, XA26, Xa26(t), Xa26(t)*, Xa26, RKb, MRKb, MRKB, TRKb, Xa3/Xa26
335		Ogawa, T., T. Yamamoto, G.S. Khush and T.W. Mew	Resistance and its inheritance to bacterial blight of IR8 rice cultivar group.	Japan. J. Breed.	41(2)	211-221.	1991	XA11	Xa11(Xa pt), Xa11, Xapt
336		Ogi, Y., H. Kato, K. Maruyama, A. Saito and F. Kikuchi	Identification of RFLP markers closely linked to the semidwarfing gene at the sd-1 locus in rice.	Japan. J. Breed.	43	141-146.	1993	SH2	sh2
337		Ogihara, Y., K. Isono and A. Saito	Toward construction of synteny maps among cereal genomes. I. Molecular characterization of cereal genomes as probed by rice genomic clones.	Jpn. J. Genet.	69	347-360.	1994		
338		Ohshima, I. and F. Kikuchi	Identification of a recessive inhibitor for photoperiod sensitivity gene, Se-1, in photoperiod-insensitive varieties of Indica type rice.  In Toward enhanced and sustainable agricultural productivity in 2000's: Breeding research and biotechnology. 	Proc. 7th Intern. Congress SABRAO & Intern Symp. WSAA, Taichung District Agricultural Improvement Station, Taiwan, R.O.C.	I.	93-100.	1994	SE1,ISE1	Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, OsHd1,  Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,iSe1, i-Se-1
339		Ohshima, I., F. Kikuchi, Y. Watanabe and C. Asahi	Genetic analysis of heading time in a cross between two Indica varieties with inhibitor genes for photoperiod sensitivity.	Japan. J. Breed.	43	101-106.	1993	SE1,SE4	Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, OsHd1,  Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,Se4(t)
340		Ohshima, I., K. Odaka, Y. Morooka, K. Nomura, F. Kikuchi, K. Maruyama, H. Kato, N. Kishimoto and A. Saito	Linkage analysis of a photoperiod-sensitive gene locus (Se-1) with RFLP markers in rice.	Japan. J. Breed.	43(Suppl. 1)	147	1993	SE1	Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, OsHd1,  Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21
341		Oka, H.I.	Phylogenetic differentiation of the cultivated rice plant. I. Variation of various characters and character combinations among rice varieties.	Japan. J. Breed.	3(2)	33-43.	1953	GL2	gl2
342		Oka, H.I.	The mechanism of sterility in the intervarietal hybrid. (Phylogenetic differentiation of the cultivated rice plant. VI).	Japan. J. Breed.	2(4)	217-223	1953	S A1(S1,X1)	s a1(s1,x1), s1, s a1, x1
343		Oka, H.I.	Phylogenetic differentiation of cultivated rice. XV. Complementary lethal genes in rice.	Jpn. J. Genet.	32(2)	83-87.	1957	HWA1,HWA2	Hwa1(L1a), L-1-a(La), L1a, Hwa1,Hwa2(L1b), L-1-b(Lb), L1b, Hwa2
344		Oka, H.I.	Genic analysis for the sterility of hybrids between distantly related varieties of cultivated rice.	J. Genet.	55(3)	397-409.	1957	SC2,SC1	s c2,s c1
345	17248657	Oka, H.I.	Analysis of genes controlling F1 sterility in rice by the use of isogenic lines.	Genetics	77	521-534.	1974	S A2(S2),SD2,S E1,S E2,S A1(S1,X1),S D1	s a2(s2), x2, s2, s a2,s d2,s e1,s e2,s a1(s1,x1), s1, s a1, x1,s d1
346		Oka, H.I.	Phylogenetic differentiation of cultivated rice, XXI. The sporophytic pollen sterility its genetic basis and intervarietal relationships as shown by F1 sterility.	Jpn. J. Genet.	53(6)	397-410.	1978	SA2,SB1,SA1,SB2	S A2(A2), S A2, A2,S B1(B1), B1, S B1,S A1(A1), A1, S A1,S B2(B2), S B2, B2
347		Oka, H.I.	Analysis of genes for stigma coloration in rice.	Rice Genetics. II. IRRI, Manila, Philippines.		97-110	1991	PS1,IPS1,IPS3,PS3,P,PS2	Ps1,IPs1*, IPs1,IPs3*, IPs2,Ps3(Ps2), Ps2, Ps3,P(Pa,Pb,Pc), A, Pa,Ps2(Ps1), Ps1, Ps2
348		Oka, H.I. and Y, Doida	Phylogenetic differentiation of cultivated rice. XX. Analysis of the genetic basis of hybrid breakdown in rice.	Jpn. J. Genet.	37(1)	24-35.	1962	SB2,SA1,SA2,SB1	S B2(B2), S B2, B2,S A1(A1), A1, S A1,S A2(A2), S A2, A2,S B1(B1), B1, S B1
350		Okumoto, T., T. Tanisaka and H. Yamagata	Genetical analysis for heading trait of rice varieties in Japan. 7. Linkage relationship between heading-date gene E1 and blast-resistance gene Pi-z.	Japan. J. Breed.	34(Suppl. 1)	292-293.	1984	E1	E1 (=m Ef1+), mEf1+, Hd4(t), m Ef1-a, m Ef1-b
351		Okumoto, T., T. Tanisaka and H. Yamagata	Heading-time genes of the rice varieties grown in south-west-warm region in Japan.	Japan. J. Breed.	41(1)	135-152.	1991	E2,E3,E1	,,E1 (=m Ef1+), mEf1+, Hd4(t), m Ef1-a, m Ef1-b
352		Okumoto, T., H. Aizawa, T. Tanisaka and H. Yamagata	Identification of the chromosome carrying the late-heading gene, E1.	Japan. J. Breed.	41(Suppl. 1)	334-335.	1991	E1	E1 (=m Ef1+), mEf1+, Hd4(t), m Ef1-a, m Ef1-b
353		Okumoto, T., A. Yoshimura, T. Tanisaka and H. Yamagata	Analysis of a rice variety Taichung 65 and its isogenic early-heading lines for late-heading genes E1, E2 and E3.	Japan. J. Breed.	42	415-429.	1992	E1	E1 (=m Ef1+), mEf1+, Hd4(t), m Ef1-a, m Ef1-b
354		Okumoto, Y., H. Inoue and T. Tanisaka	Difference of the heading-time genes of a rice variety Taichung 65 from those of Japanese rice varieties.  In Toward enhanced and sustainable agricultural productivity in 2000's: Breeding research and biotechnology. 	Proc. 7th Intern. Congress SABRAO & Intern Symp. WSAA, Taichung District Agricultural Improvement Station, Taiwan, R.O.C.	I.	131-138.	1994	SE1,E2,E3,E1	Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, OsHd1,  Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,,,E1 (=m Ef1+), mEf1+, Hd4(t), m Ef1-a, m Ef1-b
355		Okuno, K.	Inheritance of induced mutations in rice, Oryza sativa L. and their application for rice breeding.	Bull. Natl. Inst. Agric. Sci., Ser.D	34	187-274.	1983	CHL7	chl7
356		Okuno, K., H. Fuwa and M. Yano	A new mutant gene lowering amylose content in endosperm starch of rice, Oryza sativa L.	Japan. J. Breed.	33(4)	387-394.	1983		
357		Omura, T., N. Iwata and H. Satoh	Linkage studies in rice (Oryza sativa L.). On some virescent and chlorina mutants.	J. Fac. Agr. Kyushu Univ.	23	85-93.	1978	V2,V5,DL,CHL2,FC1,CHL3,V1,CHL1,V3,CHL4,V4	v2, mGmk, GMK, Gmk, pt/mtGK, pt/mt GK, OsV2, OsGMK,v5,OsDL, dl(lop), lop, dl, dl1, OsDRPq3, DRPq3,chl2,fc1, OsTB1, tb1, OsTB1/FC1, Os TB1, TB1, OsFC1, MP3, OsMP3,chl3,v1, NUS1,OsV1, OsNUS1,chl1, chl1(ch1), ch1,v3, RNRL1, rnrl1, RNR1, RNRL, Osv3, OsRNRL1, OsRNR1, OsRNRL,chl4,v4
358		Oosumi, T., A. Miyazaki, H. Uchimiya, F. Kikuchi and M. Yokoo	Analysis of glucose phosphate isomerase in near-isogenic lines and cultivars of rice (Oryza sativa L.).	Bot. Mag. Tokyo.	102	283-289.	1989	PGI2,SE1	Pgi2(Pgib), Pgib, Pgi_2, Pgi2, GPI-B, PGI-B, PHI-B, Pgi-b, PGI-b, SIS, OsSIS, OsPGI2,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, OsHd1,  Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21
359		Pai, C. and P.Y. Fu	Genetic analysis for peroxidase and acid phosphatase isozymes in cultivated rice.	Agron. Bull. (Nat. Chung Hsing Univ. Taichung)	2	75-85.	1977	POX3	Pox3
360		Pai, C. and S.M. Jan	Linkage analysis for two loci of peroxidase isozymes in rice.	Genome	30(Suppl. 1)	289	1988	POX1,MPOX1	Pox1(Px,Pe), PRX74, Px, Pe, Pox1, prx74,M Pox1(M px1), MPx1, MPox1, Pox7
361	4781373	Pai, C., T. Endo and H.I. Oka	Genic analysis for peroxidase isozymes and thier organ specificity in Oryza perennis and O.sativa.	Can. J. Genet. Cytol.	15(4)	845-853.	1973	POX1,RLB-4C,RLS-4C	Pox1(Px,Pe), PRX74, Px, Pe, Pox1, prx74,RLB-4C, Reg3,RLS-4C, Reg4
362		Pai, C., T. Endo and H.I. Oka	Genic analysis for acid phosphatase isozymes in Oryza perennis and O.sativa.	Can. J. Genet. Cytol.	17(4)	637-650.	1975	ACP2,ACP3	Acp2,Acp3
363		Parco, A., G. Magpantay, G. Second, R. Rodriguez and N. Huang	Restriction fragment length polymorphism and linkage analysis of rice alpha-amylase gene family.	RGN	11	137-140.	1994	AMY3D,AMY3C,AMY1C,AMY2A,AMY3E,AMY1B,AMY3A,AMY1A,AMY3B	Amy3D/E*(RAmy3D/E), alpha Amy3, AmyII-4, AMY1.3, Amy3D, Amy3D/E*, RAmy3D/E, Amy3D_E, Amy8, aAmy3, RAmy3D, OsAmy3D, alphaAmy3, OsRamy3D,Amy3A/B/C*(RAmy3A/B/C), AmyII-6, AMY1.7, Amy3C, RAmy3A/B/C, Amy3A/B/C*, Amy7, AMY3B, RAmy3C, OsAmy3B,Amy1A/C*(RAmy1A/C), alpha Amy10, Amy1C, RAmy1A/C, Amy1A/C*, Amy3, RAmy1C, OsAmy1C, alphaAmy10-C,Amy2A*(RAmy2A), AMY1.5, AMYC2, RAmy2A, Amy4, Amy2A,Amy3D/E*(RAmy3D/E), alpha Amy8, alphaAmy8, AmyII-3, AMY1.4, Amy3E, Amy3D/E*, RAmy3D/E, Amy9, RAmy3E, alphaAmy8-C, AMY3E/AMY1.4, OsAmy3E, OsRamy3E,Amy1B*(RAmy1B), AMYC, RAmy1B, Amy2, Amy1B, Osamy-c, OSamy-c, OSamy--c ,Amy3A/B/C*(RAmy3A/B/C), Amy3A, RAmy3A/B/C, Amy3A/B/C*, AMY1.2, Amy5, RAmy3A, OsEnS-129,Amy1A/C*(RAmy1A/C), alpha Amy7, AMY1.1, Amy1A, RAmy1A/C, Amy1A/C*, Amy1, Amy1A_C, OsAmy1A, alphaAmy7-C, RAmy1A, AmyI-1, OsAmyI-1, OsRamy1A,Amy3A/B/C*(RAmy3A/B/C), alpha Amy6, AmyII-5, AMY1.6, Amy1.6, Amy3B, BRAmy3A/B/C, Amy3A/B/C*, Amy6, RAmy3B, alphaAmy6-C, OsRamy3B, OsAmy3C
364		Pavithran, K.	Genetics of male sterility and nude panicle in rice (Oryza sativa L.).	In Crop Improvement Research Proceeding 4th International SABRAO Congress	1983	141-147.	1983	NP,MP2	np*, np,mp2
365		Pavithran, K., P.T. Annie, R. Shyla, C.P.S. Kumar and B. Shobha	Developmental genetic studies in rice, Oryza sativa L.	S. Iyama and G. Takeda (eds.), Proc. 6th Internat. Congress of SABRAO.	I	397-400.	1989	MP1,CL	mp1,Cl
366		Petpisit, V., G.S. Khush and H.E. Kauffman	Inheritance of resistance to bacterial blight in rice.	Crop Sci.	17(4)	551-554.	1977	XA4,XA3,XA5,XA1,XA2	Xa4, Xa4(Xa4a), Xa-4, Xa4-a, WAK, wak, xa4,Xa-3, Xa3 (Xa4b, Xa6, Xa9, Xa w), Xa3, Xaw, Xa6, Xa9, Xa4-b, XA26, Xa26(t), Xa26(t)*, Xa26, RKb, MRKb, MRKB, TRKb, Xa3/Xa26,xa5, xa-5, Xa5, TFIIAy, OsTFIIAgamma5, TFIIAgamma5, OsTFIIAgamma5/Xa5,Xa1(Xe), Xe, Xa1, Xa-1,Xa2
367		Pham, J.L., J.C. Glaszmann, R. Sano, P. Barbier, A. Ghesquiere and G. Second	Isozyme markers in rice genetic analysis and linkage relationships.	Genome	33(3)	348-359.	1990	PGI2,MDH1,PGI3,EST5,GOT1,ICD1,AMP1,GOT3,ENP1,GOT2,AMP3,EST2,EST1,EST7,EST9,POX3,POX4,AMP2,EST3,PGD1,SDH1,POX2,ACP2,ACP1,ACP3,EST6,EST8	Pgi2(Pgib), Pgib, Pgi_2, Pgi2, GPI-B, PGI-B, PHI-B, Pgi-b, PGI-b, SIS, OsSIS, OsPGI2,Mdh1,Pgi3,Est5,Got1, Aat1, OsAAT, GOT-A,Icd1,Amp1(Lap1,LapF), LapF, Lap1, Amp1,Got3, Aat3,Enp1*, Enp1,Got2, Aat2,Amp3(Amp1), Amp_3, Amp-3, Amp3, Amp1,Est2, Est_2,Est1,Est7,Est9 (Est c1), Est8, Estcl, Est c1, Est_9,Pox3,Pox4,Amp2(AlapA), Lap2, AlapA, Amp_2, Amp-2, Amp2,Est3,Pgd1, 6Pgd1,Sdh1, Skd,Pox2,Acp2,Acp1,Acp3,Est6,Est8
368		Poonyarit, M., D.J. Mackill and B.S. Vergara	Genetics of photoperiod sensitivity and critical daylength in rice.	Crop Sci.	29(4)	647-652.	1989	SE3	Se3(t), Se3
369		Poonyarit, M., D.J. Mackill and B.S. Vergara	Two genes affecting photoperiod sensitivity in rice.	RGN	4	87-89.	1987	SE3	Se3(t), Se3
370		Prasad, K. and R. Seetharaman	Inheritance of grain size and its interrelationship in rice.	Indian J. Genet. & Plant Breed.	51(3)	352-356.	1991	CG,IANA,IANB,KR1,KR2,S,ANA,ANB	cg*, cg,IAna*,IAnb*,Kr1*, Kr1,Kr2*, Kr2,s Kr*, skr,Ana*,Anb*
371		Ramiah, K. and K. Ramaswami	Floating habit in rice.	Indian J. Agr. Sci.	11(1)	1-8.	1941	DW1,DW2	dw1(fh1), fh1, dw1,dw2(fh2), dw2, fh2, FH2, OsFH2
372		Ranjhan, S., J.C. Glaszmann and G.S. Khush	Localization of Pgi-1, Sdh-1, Est-9 and Adh-1 on rice chromosomes by trisomic analysis.	RGN	3	56-58.	1986	ADH1,EST9,SDH1,PGI1	Adh1, Adh1/2, adh1/adh2, OsADH1,Est9 (Est c1), Est8, Estcl, Est c1, Est_9,Sdh1, Skd,Pgi1(Pgia), Pgia, Pgi_1, Pgi1, GPI-A, PHI-A, Pgi-a, PGI-a
373		Ranjhan, S., J.C. Glaszmann, D.A. Ramirez and G.S. Khush	Choromosomal localization of four isozyme loci by trisomic analysis in rice (Oryza sativa L.).	Theor. Appl. Genet.	75	541-545.	1988	ADH1,EST9,SDH1,PGI1	Adh1, Adh1/2, adh1/adh2, OsADH1,Est9 (Est c1), Est8, Estcl, Est c1, Est_9,Sdh1, Skd,Pgi1(Pgia), Pgia, Pgi_1, Pgi1, GPI-A, PHI-A, Pgi-a, PGI-a
374		Ranjhan, S., J.C. Litts, M.R. Foolad and R.L. Rodriguez	Chromosomal localization and genomic organization of alpha-amylase genes in rice (Oryza sativa L.).	Theor. Appl. Genet.	82	481-488.	1991	AMY3E,AMY1B,AMY3D,ADH2,ADH1,AMY3A,AMY1C,EM,AMY2A,AMY1A,AMY3C,AMY3B	Amy3D/E*(RAmy3D/E), alpha Amy8, alphaAmy8, AmyII-3, AMY1.4, Amy3E, Amy3D/E*, RAmy3D/E, Amy9, RAmy3E, alphaAmy8-C, AMY3E/AMY1.4, OsAmy3E, OsRamy3E,Amy1B*(RAmy1B), AMYC, RAmy1B, Amy2, Amy1B, Osamy-c, OSamy-c, OSamy--c ,Amy3D/E*(RAmy3D/E), alpha Amy3, AmyII-4, AMY1.3, Amy3D, Amy3D/E*, RAmy3D/E, Amy3D_E, Amy8, aAmy3, RAmy3D, OsAmy3D, alphaAmy3, OsRamy3D,Adh2*, Adh2, OsADH2,Adh1, Adh1/2, adh1/adh2, OsADH1,Amy3A/B/C*(RAmy3A/B/C), Amy3A, RAmy3A/B/C, Amy3A/B/C*, AMY1.2, Amy5, RAmy3A, OsEnS-129,Amy1A/C*(RAmy1A/C), alpha Amy10, Amy1C, RAmy1A/C, Amy1A/C*, Amy3, RAmy1C, OsAmy1C, alphaAmy10-C,Em*, EMP1, Emp1, EM, Em, OsEm, Osem, OsLEA21, OsEm1, Em1 ,Amy2A*(RAmy2A), AMY1.5, AMYC2, RAmy2A, Amy4, Amy2A,Amy1A/C*(RAmy1A/C), alpha Amy7, AMY1.1, Amy1A, RAmy1A/C, Amy1A/C*, Amy1, Amy1A_C, OsAmy1A, alphaAmy7-C, RAmy1A, AmyI-1, OsAmyI-1, OsRamy1A,Amy3A/B/C*(RAmy3A/B/C), AmyII-6, AMY1.7, Amy3C, RAmy3A/B/C, Amy3A/B/C*, Amy7, AMY3B, RAmy3C, OsAmy3B,Amy3A/B/C*(RAmy3A/B/C), alpha Amy6, AmyII-5, AMY1.6, Amy1.6, Amy3B, BRAmy3A/B/C, Amy3A/B/C*, Amy6, RAmy3B, alphaAmy6-C, OsRamy3B, OsAmy3C
375		Rao, C.H. and R. Seetharaman	Genetic studies in pericarp and hull colour in rice.	Indian J. Genet. & Plant Breed.	33(3)	319-323.	1973	BHC	Ph=Bhc(Po), Bhc, Po, Ph, Bh3, PPO, Phr1, BH1
376		Ratho, S.N. and S.B. Pradhan	Cytoplasmically controlled cold tolerance in a cytoplasmic-genetic male sterile line of rice.	Euphytica	58	241-244.	1991	[CMS-KALINGA-I]	[cms-Kalinga-I]*, [cms-Kalinga-I]
377		Razzaque, C.A.	A female sterile mutant in rice.	SABRAO Journal	7(1)	99-102.	1974	FES3	Fes3(Fes2), Fs, Fes3
378		Reddy, C.D.R., Y.S. Nerkar and M.B. Misal	Genetic control of iron deficiency chlorosis tolerance in rice.	RGN	6	115-116.	1989	IC	ic*, Ic
379		Reyes, B.G. de los, D.S. Brar and G.S. Khush	Identification of four new isozyme loci in rice.	RGN	6	103-106.	1989	DIA1,DIA2,XDH1,FDP1	Dia1(t)*, Dia1,Dia2(t)*, Dia2,Xdh1(t)*, Xdh1(t), Xdh1,Fdp1*, Fdp1
380		Reyes, B.G. de los, D.S. Brar and G.S. Khush	Linkage between z-9 and Pgi-1 markers of chromosome 3 in rice.	RGN	10	86-87.	1993	Z9	z9
381		Rezaul Karim, A.N.M. and M.D. Pathak	New genes for resistance to green leaf hopper Nephotettix virescens (Distant) in Oryza sativa L.	Crop Prot.	1(4)	483-490.	1982	GLH7,GLH6	Glh7,Glh6
382		Rha, E.S., F.S. Thseng and S.T. Wu	Distorted segregation of Acp-1 for acid phosphatase in a wide cross of rice.	RGN	11	106-108.	1994	GA13	ga13
383			The rice RFLP linkage map as of Feb. 25, 1993. RFLP linkage map, part 1, 2, 3.	RGN	2(1)	11-13	1993		
384		Rodriguez, R.L., N. Huang, T. Sutliff, S. Ranjhan, E. Karrer and J. Litts	Organization, structure and expression of the alpha-amylase multigene family.	Rice Genetics. II. IRRI, Manila, Philippines.		417-429.	1991	AMY3D,AMY3A,AMY1C,AMY3E,AMY2A,AMY1B,AMY1A,AMY3B,AMY3C	Amy3D/E*(RAmy3D/E), alpha Amy3, AmyII-4, AMY1.3, Amy3D, Amy3D/E*, RAmy3D/E, Amy3D_E, Amy8, aAmy3, RAmy3D, OsAmy3D, alphaAmy3, OsRamy3D,Amy3A/B/C*(RAmy3A/B/C), Amy3A, RAmy3A/B/C, Amy3A/B/C*, AMY1.2, Amy5, RAmy3A, OsEnS-129,Amy1A/C*(RAmy1A/C), alpha Amy10, Amy1C, RAmy1A/C, Amy1A/C*, Amy3, RAmy1C, OsAmy1C, alphaAmy10-C,Amy3D/E*(RAmy3D/E), alpha Amy8, alphaAmy8, AmyII-3, AMY1.4, Amy3E, Amy3D/E*, RAmy3D/E, Amy9, RAmy3E, alphaAmy8-C, AMY3E/AMY1.4, OsAmy3E, OsRamy3E,Amy2A*(RAmy2A), AMY1.5, AMYC2, RAmy2A, Amy4, Amy2A,Amy1B*(RAmy1B), AMYC, RAmy1B, Amy2, Amy1B, Osamy-c, OSamy-c, OSamy--c ,Amy1A/C*(RAmy1A/C), alpha Amy7, AMY1.1, Amy1A, RAmy1A/C, Amy1A/C*, Amy1, Amy1A_C, OsAmy1A, alphaAmy7-C, RAmy1A, AmyI-1, OsAmyI-1, OsRamy1A,Amy3A/B/C*(RAmy3A/B/C), alpha Amy6, AmyII-5, AMY1.6, Amy1.6, Amy3B, BRAmy3A/B/C, Amy3A/B/C*, Amy6, RAmy3B, alphaAmy6-C, OsRamy3B, OsAmy3C,Amy3A/B/C*(RAmy3A/B/C), AmyII-6, AMY1.7, Amy3C, RAmy3A/B/C, Amy3A/B/C*, Amy7, AMY3B, RAmy3C, OsAmy3B
385		Ronald, P.C. and S.D. Tanksley	Genetic and physical mapping of the bacterial blight resistance gene Xa-21.	RGN	8	142-143.	1991	XA21	Xa21*, Xa21, OsXA21
386	1362973	Ronald, P.C., B. Albano, R. Tabien, L. Abenes, K. Wu, S. McCouch and S.D. Tanksley	Genetic and physical analysis of the rice bacterial blight disease resistance locus, Xa21.	Mol. Gen. Genet.	236	113-120.	1992	XA21	Xa21*, Xa21, OsXA21
387		Ronald, P.C., T. Holsten, J. Scambray, W. Song, G. Wang and C. Williams	Molecular genetic analysis of the rice bacterial blight resistance.	In Rice Blast Disease. R.S. Zeigler et al. (eds.), C.A.B. International, Wallingford, UK.		187-194.	1994	XA21	Xa21*, Xa21, OsXA21
388		Rutger, J.N. and H.L. Carnahan	A fourth genetic element to facilitate hybrid cereal production. A recessive tall in rice.	Crop Sci.	21(3)	373-376.	1981	EUI1	eui1, GA16,17ox, CYP714D1, EUI, CYP714D1/EUI, OsEUI, LG5, OsLG5
389		Rutger, J.N., L.E. Azzini and P.J. Brookhouzen	Inheritance of semidwarf and other useful mutant genes in rice.	Rice Genetics. IRRI, Manila, Philippines.		261-271.	1986	LGP,EUI1,YP	lgp*, lgp,eui1, GA16,17ox, CYP714D1, EUI, CYP714D1/EUI, OsEUI, LG5, OsLG5,yp*, gh4
390		Rybka, K., M. Miyamoto, M. Kataoka, I. Ando and S. Kawasaki	Improved high-resolution mapping of rice-blast resistance genes.	Breeding Science	44(Suppl. 2)	190	1994	PITA	Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30, Trx30
391		Saeda, T. and H. Kitano	Genetic analysis of a short culm mutant showing the dm-type internode distribution pattern.	Japan. J. Breed.	42(Suppl. 2)	214-215.	1992	DM-1*,SSI1	Dm-1*,Ssi1, Ssi1(Dm1)*, Dm1, Ssi1
392		Sahu, R.K. and G.S. Khush	Genetics of resistance to four races of Xanthomonas campestris pv. oryzae in some rice cultivars.	Plant Breeding	102(3)	232-236.	1989	XA13	xa13, Xa13, Os8N3, Os-8N3, 8N3, OsSWEET11, SWEET11, OsSWEET11/Xa13, Xa13/Os8N3/SWEET11, Os8N3/Xa13, OsSWEET11/Os8N3, OsSWEET11a, SWEET11a
393		Sahu, V.N., R. Mishra, B.P. Chaunhary, P.S. Shrivastava and M.N. Shrivastava	Inheritance of resistance to gallmidge in rice.	RGN	7	118-121.	1990	GM3,GM2	gm3*, gm3,Gm2, Gm-2, GM-2
394		Saito, A., M. Yano, N. Kishimoto, M. Nakagahra, A. Yoshimura, K. Saito, S. Kuhara, Y. Ukai, M. Kawase, T. Nagamine, S. Yoshimura, O. Ideta, R. Ohsawa, Y. Hayano, N. Iwata and M. Sugiura	Linkage map of restriction fragment length polymorphism loci in rice.	Japan. J. Breed.	41	665-670.	1991	LAX1,ALD2,CHT1,AMP1,CHL1,LG,ALD1,SDH1,CHT2,CHT3,BHC	lax, lax(lx), lx, OsbHLH123, bHLH123, OsLAX1, BOS1, OsBOS1,Ald2*(ald2), Ald2, ald2,Cht1*(Chi1), Ch16, Cht1, CHT-1, CH16, RC24, OsChia1a, OsChia1, Chi1, Cht1*, Chi-1, Cht-1, Cht1, RCC1, OsCht-1, PR3, OsPR3,Amp1(Lap1,LapF), LapF, Lap1, Amp1,chl1, chl1(ch1), ch1,lg,Ald1*, Ald1,Sdh1, Skd,Cht2*, Cht2, RC7, OsChia1b, Chia1b, CHIT17, OsCHIT17,Cht3*, Cht3, Cht-3, CH6, OsChia1c, CHI7, OsCHI11, CHI11, OsPR3, PR3,Ph=Bhc(Po), Bhc, Po, Ph, Bh3, PPO, Phr1, BH1
395		Sakaguchi, S.	Linkage studies on the resistance to bacterial leaf blight, Xanthomonas oryzae (Uyeda et Ishiyama) Dowson, in rice.	Bull. Natl. Inst. Agric. Sci., Ser.D	16	1-18.	1967	XA1,XA2	Xa1(Xe), Xe, Xa1, Xa-1,Xa2
396		Salam, M.A., D.J. Mackill and J.C. Glaszmann	Linkage between Pgi-2 and photoperiod sensitivity.	RGN	7	130-132.	1990	PGI2,PS	Pgi2(Pgib), Pgib, Pgi_2, Pgi2, GPI-B, PGI-B, PHI-B, Pgi-b, PGI-b, SIS, OsSIS, OsPGI2,PS*
397		Sanchez, A.C. and G.S. Khush	Location of chl-7 on linkage group 6.	RGN	8	104-105.	1991	CHL7	chl7
398		Sanchez, A.C. and G.S. Khush	Seven new genes for zebra character in rice.	RGN	9	68-71.	1992	Z9,Z7,Z13,Z10,Z8,Z11,Z12	z9,z7,z13,z10,z8,z11,z12
399		Sanchez, A.C. and G.S. Khush	Chromosomal location of some marker genes in rice using the primary trisomics.	J. Hered.	85	297-300.	1994	GF2,Z8,BC5,Z11,Z12,Z9,PL2,ST7,BC2,RK3,Z7,Z13,SPL9,ST8,WP1,CHL8,Z10,GH2	gf2,z8,bc5, bn, bc-5,z11,z12,z9,pl2(t), pl2,st7,bc2, bc-2,Rk3,z7,z13,spl9,st8,wp1,chl8,z10,gh2, CAD2, CAD, OsCAD2, OsGH2 
400		Sanchez, A.C., G.S. Khush and D.S. Brar	Linkage relations between Adh-1 and two morphological markers.	RGN	7	110-111.	1990	ADH1	Adh1, Adh1/2, adh1/adh2, OsADH1
401		Sano, R. and P. Barbier	Analysis of five isoenzyme genes and chromosomal location of Amp-1.	RGN	2	60-62.	1985	S4,PGI2,AMP3,EST9	,Pgi2(Pgib), Pgib, Pgi_2, Pgi2, GPI-B, PGI-B, PHI-B, Pgi-b, PGI-b, SIS, OsSIS, OsPGI2,Amp3(Amp1), Amp_3, Amp-3, Amp3, Amp1,Est9 (Est c1), Est8, Estcl, Est c1, Est_9
402		Sano, Y.	A new gene controlling sterility in F1 hybrids of two cultivated rice species.	J. Hered.	74(6)	435-439.	1983	S4,S3	,
403		Sano, Y.	Differential regulation of waxy gene expression in rice endosperm.	Theor. Appl. Genet.	68	467-473.	1984	WX1	wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx
404		Sano, Y.	Identification of sterility genes introduced from Oryza glaberrima into O.sativa.	Japan. J. Breed.	35(Suppl. 1)	202-203.	1985	S4	
405		Sano, Y.	Gametic eliminator detected in the wild progenitor of Oryza sativa.	RGN	6	93-94.	1989	S6	
406	2341030	Sano, Y.	The genic nature of gamete eliminator in rice.	Genetics	125	183-191.	1990	S10,S1	,
407		Sano, Y.	Genetic analysis of an alien chromosomal segment introduced from Oryza rufipogon into O.sativa.	Japan. J. Breed.	40(Suppl. 2)	306-307.	1990	S6	
408		Sano, Y.	A dominant suppressor for the photoperiod sensitivity gene,Se1 , detected in a photoperiod insensitive cultivar of Indica type.	RGN	7	103-105.	1990	SUSE1,ENSE1	SuSe1(t)*, Su Se1(t)*,En Se1, EnSe1(t), EnSe1
409		Sano, Y.	A gene for low crossability found in the common wild rice.	RGN	8	115-116.	1991	CIF1	Cinf(t)*(Lcr), cinf(t), Cif, Lcr, Cinf
410		Sano, Y.	Genetic comparisons of chromosome 6 between wild and cultivated rice.	Japan. J. Breed.	42	561-572.	1992	CIF1,ENSE1	Cinf(t)*(Lcr), cinf(t), Cif, Lcr, Cinf,En Se1, EnSe1(t), EnSe1
411		Sano, Y.	A gamete eliminator reconfirmed in a Japonica-Indica hybrid.	RGN	10	76-77.	1993	S11	S11(t)
412		Sano, Y. and M. Eiguchi	A gene complex responsible for seed shedding and spreading panicle found in wild rice.	Japan. J. Breed.	40(Suppl. 1)	460-461.	1990	SH3,SPR3	Sh3,Spr3(t), Spr3
413		Sano, Y. and M. Eiguchi	A nuclear gene inducing fertility restoration in cytoplasmic male-sterile rice.	RGN	8	113-115.	1991	IFR	Ifr, Rf16, Ifr1
414		Sano, Y., Y.E. Chu and H.I. Oka	Genetic studies of speciation in cultivated rice. I. Genic analysis for the F1 sterility between O. sativa L. and O. glaberrima Steud.	Jpn. J. Genet.	54(2)	121-132.	1979	S2,S1	,
415		Sano, Y., H.Y. Hirano and M. Nishimura	Evolutionary significance of differential regulation at the wx locus of rice.	Rice Genetics. II. IRRI, Manila, Philippines.		11-20.	1991	WX1	wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx
416		Sano, Y., M. Eiguchi and H.Y. Hirano	Gametic eliminations found in the Indica-Japonica hybird of rice.	Japan. J. Breed.	42(Suppl. 2)	454-455.	1992	S10	
417		Sano, Y., M. Eiguchi, H.Y. Hirano and M. Yamada	A nuclear gene modifying instability of fertility restoration in cytoplasmic male sterile rice.	Genet. Res.	60	195-200.	1992	IFR	Ifr, Rf16, Ifr1
418		Sano, Y., R. Sano, M. Eiguchi and H.Y. Hirano	Gamete eliminator adjacent to the wx locus as revealed by pollen analysis in rice.	J. Hered.	85	310-312.	1994	S12,S14,S10,S13	S12(t),S14(t),,CSB, OsCHR745, CHR745, OlCHR
419		Sastry, M.V.S.	Linkage studies in rice. -Interrelationship of genes governing brittle culm and awning.	Oryza Cuttack	14(1)	9-11.	1977	AN3	An3
420		Sastry, M.V.S. and R. Seetharaman	Inheritance in rice.	Indian J. Genet. & Plant Breed.	40(3)	573-577.	1980	BD2,AN2,BD1	bd2,An2,bd1
421		Sastry, M.V.S., P.S. Prakasa Rao and R. Seetharaman	Inheritance of gall midge resistance in rice and linkage relations.	Indian J. Genet. & Plant Breed.	35(1)	156-165.	1975	GM,IBF	gm1, gm2(pd), pd, gm13,IBf
422		Sastry, M.V.S., U.P. Rao, M.B. Kaloda and M. Sain	Inheritance of resistance to gall midge (Orseolia oryzae) in rice.	Indian J. Genet. & Plant Breed.	44(2)	325-328.	1984	GM	gm1, gm2(pd), pd, gm13
423		Sato, S.	Genetic studies on genic male sterility obtained in the procedure of breeding of an isogenic reciprocal translocation of a rice variety, Taichung 65.	Japan. J. Breed.	39(Suppl. 1)	236-237.	1989	MS9	ms9
424		Sato, S.	Action of earliness gene Ef-x derived from native cultivar Kokusyokuto-2 (A58) in Hokkaido, and its linkage analysis by the use of interchange homozygotes.	Japan. J. Breed.	41(Suppl. 1)	332-333.	1991	EFX	Efx(t)*, Efx, Ef5(t)*
425		Sato, S. and S. Tsukasaki	Genetical studies on awnedness gene An4 locating on the twelfth chromosome of rice plant.	Japan. J. Breed.	34(Suppl. 1)	288-289.	1984	AN4	An4
426		Sato, S. and K. Shirakawa	Determination of an earliness gene locus on Nishimura's seventh chromosome of rice, Oryza sativa L.	Japan. J. Breed.	36(Suppl. 1)	354-355.	1986	EF1	Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 
427		Sato, S. and C. Shinjyo	Genetical studies on genic male sterile mutant obtained through breeding of isogenic translocation line of Taichung 65 in rice, Oryza sativa L.	Japan. J. Breed.	41(3)	451-459.	1991	CL,MS9,UR1	Cl,ms9,Ur1
428		Sato, S. and C. Shinjyo	Identification of earliness genes derived from 15 reciprocal translocation homozygotes of rice, Oryza sativa L.	Breeding Science	45	45-49.	1995	EF1	Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 
429		Sato, S., K. Muraoka and Y. Sano	Reconstruction of a linkage group corresponding to the Nishimura's second chromosome in rice, Oryza sativa L.	Japan. J. Breed.	32(3)	232-238.	1982	NL1,GL1	nl1, OsGATA15, GATA15, OsNL1,gl1, NUDA/GL-1, NUDA/GL1, NUDA, GL-1, OsWOX3B, OsWOX2, OsWOX3, Os WOX3, WOX3B, WOX2, WOX3, LSY1, OsLSY1, DEP, OsDEP
430		Sato, S., L. Sakamoto and S. Nakasone	Location of Ef-1 for earliness on Nishimura's seventh chromosome.	RGN	2	59-60.	1985	RF1,EF1	Rf1 (Rf-1), rf-1, PPR791, PPR8-1, Rf-1, Rf1, Rf-1A, Rf5, Rf1a, RF5, Rf5(t)*(Rf(t)*), RF1A, PPR6, PLS31, OsPLS31,Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 
431		Sato, S., L. Sakamoto, K. Shirakawa and S. Nakasone	Chromosomal location of earliness gene Ef1 of rice, Oryza sativa L.	Japan. J. Breed.	38(4)	385-396.	1988	EF1	Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 
432		Sato, S., K. Ogata and C. Shinjyo	Thermo-sensitive action of an earliness gene Ef-x in rice. Oryza sativa L.	Jpn. J. Genet.	67	473-482.	1992	EFX,EFY	Efx(t)*, Efx, Ef5(t)*,Efy(t)*, Ef6(t)*, Efy
433		Sato, S., A. Tamaki and C. Shinjyo	Does an earliness gene Ef-1 shorten pleiotropically anther length in rice ? In Toward enhanced and sustainable agricultural productivity in 2000's: Breeding research and biotechnology. 	Proc. 7th Intern. Congress SABRAO & Intern Symp. WSAA, Taichung District Agricultural Improvement Station, Taiwan, R.O.C.	I.	109-119.	1994	EF1	Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 
434		Sato, Y.I.	Genetic control of apiculus hair length.	RGN	2	72-74.	1985	APH	aph
435		Sato, Y.I., S. Matsuura and K. Hayashi	The genetic basis of hybrid chlorosis found in a cross between Japanese native cultivars.	RGN	1	106-107.	1984	HCA2,HCA1	hca2,hca1
436		Sato, Y.I., R. Ishikawa and H. Morishima	Linkage analysis of gene Aph for apiculus hair length.	RGN	4	74-75.	1987	APH	aph
437		Satoh, H.	Genic mutations affecting endosperm properties in rice.	Gamma Field Symposia	24	17-37.	1985	SHR2	shr2, sh2
438		Satoh, H.	Exploitation and identification on endosperm characters.	Exploitation and identification of rice gene resources. N. Iwata, ed. (Report of Grant-in-Aid for Scientific Research).		54-75.	1990	ESP2,ESP3,ESP1	esp2(rsp2), rsp2, esp2, PDIL1-1,esp3(rsp3), rsp3, esp3,esp1(rsp1), rsp1, esp1, OsESP1, ESP1/eRF1, eRF1, OseRF1
439		Satoh, H.	Genic analysis on the variation of endosperm storage protein found in native varieties in rice.	Reconstruction of rice genetics. K. Takeda, ed. (Report of Grant-in-Aid for Scientific Research).		24-31.	1995	GLU1,GLU2,GLU3,GLU10,GLU4,GLU5,GLU6,GLU7,GLU8,GLU9,PRO2,PRO1,PRO3,PRO5,PRO4,GLUP3	Glu1t*(Glu1), Glu1t*, Glu1t, Glu1, Glu12,Glu2t*(Glu2), Glu2t*, Glu2t, Glu2, Glu13,Glu3t*(Glu3), Glu3t*, Glu3t, Glu3, Glu14,,Glu10t*,Glu4t*(Glu4), Glu4, Glu4t, Glu4t*, Glu15,Glu5t*(Glu5), Glu5, Glu5t, Glu5t*,Glu6t*(Glu6,GluB,C,E), GluE, GluB, Glu6t*, GluC, Glu6t, Glu6, Glu17,Glu7t*(Glu7,GluA), GluA, Glu7t, Glu7, Glu18,Glu8t*(GluE),Glu9t*,Pro2*, Pro2,Pro1*, Pro1,Pro3*, Pro3,Pro5*, Pro5,Pro4*, Pro4,glup3(esp7), esp7, glup3, OsVPE1, VPE1, OsaLeg3
440		Satoh, H. and T. Omura	New endosperm mutations induced by chemical mutagen in rice, Oryza sativa L.	Japan. J. Breed.	31(3)	316-326.	1981	SUG,SHR1,DU1	sug(su), su, sug1, su1, su-1,shr1, sh1, shr,du1
441		Satoh, H. and T. Omura	Mutagenesis in rice by treating fertilized egg cells with nitroso compounds.	Rice Genetics. IRRI, Manila, Philippines.		707-717.	1986	WX1,FLO1,DU1,FLO2,DU2,DU3	wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx,flo1, flo1-1, o,du1,flo2, flo3(t), Osflo2, Osflo3(t), Osflo-2, flo-2, FLO2-1, FLO2-2,du2,du3, OsCBP20, OsCBP20/du3, CBP20
442		Satoh, H. and N. Iwata	Linkage analysis in rice. On three mutant loci for endosperm properties, ge(giant embryo), du-4(dull endosperm-4) and flo-1(floury endosperm-1).	Japan. J. Breed.	40(Suppl. 2)	268-269.	1990	D1,NL2,SPL5,SPL8,FLO1,OPS,V10,RI,D6,V11,DU4,RFS,BGL,G1,SPL7,NL1,RC	d1, GPA1, GA1, OsGA1, RGA1, dwf1, XA7, RGA, D1/RGA1, D89, TGW5, OsTGW5, SRG5, OsSRG5,nl2,spl5(bl6,spl5-1), bl6, spl5, SF3b3,spl8(bl8), spl8, bl8,flo1, flo1-1, o,ops,v10,ri,d6(d34), d34, dwf6,v11,du4,rfs, cul7, OsRFS, OsCHR729, CHR729, CHR4, OsCHR4, CRL6, OsCRL, OsCHR4/CHR729, PKR1, OsPHD32, PHD32,bgl, OsRopGEF10, Os RopGEF10, RopGEF10, OsGEF21, GEF21, SPD25, OsSPD25,g1 (lng), lng, g1, ELE, Os ELE, OsG1, G1/ELE, LSL2, OsLSL2,spl7, HSFA4D, HSF10, HSF15, OsHSF15, SP17, OsHsf-15, rHsf10, OsHsfA4d, HSfA4d, lrd13, HSF1,nl1, OsGATA15, GATA15, OsNL1,Rc, OsbHLH017, OsbHLH17, SD7-1, qSD7-1/qPC7, OsGL3C, GL3C
443		Satoh, H., N. Iwata and T. Omura	Gene analysis of some dripping-wet leaf mutants in rice.	Japan. J. Breed.	33(Suppl. 2)	242-243.	1983	DRP6,FC2,DRP2,DRP5,DRP7	drp6,fc2,drp2,drp5,drp7, OsHSD1, LGF1, HSD1
444		Satoh, H., N. Iwata and T. Omura	Linkage analysis in rice. On the loci of new virescent genes, v-9(t) and v-10(t) and v-11(t).	Japan. J. Breed.	34(Suppl. 1)	286-287.	1984	V10,V11,V9	v10,v11,v9
445		Satoh, H., N. Iwata and T. Omura	Linkage analysis in rice. On the loci of dripping-wet leaf genes, drp-5, drp-6, drp-7 and drp-8(t).	Japan. J. Breed.	36(Suppl. 1)	352-353.	1986	DRP8,DRP5,DRP6,FC2,DRP7	drp8,drp5,drp6,fc2,drp7, OsHSD1, LGF1, HSD1
446		Satoh, H., H. Suehisa, M. Ogawa and A. Yoshimura,	Studies on rice glutelin, 3. Genetic analysis of mutants for glutelin acidic subunits in cultivated rice, Oryza sativa L.	Japan. J. Breed.	41(Suppl. 2)	436-437.	1991		
447		Satoh, H., T. Itoh, M.Y. Son and T. Kumamaru	Chromosomal location of a spontaneous mutant gene for 57 kDa polypeptides in rice.	Japan. J. Breed.	43(Suppl. 1)	139	1993	PIZ,DRP2,PITA,GLUP3	Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2,drp2,Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30, Trx30,glup3(esp7), esp7, glup3, OsVPE1, VPE1, OsaLeg3
448		Satoh, H., T. Kumamaru, S. Yoshimura and M. Ogawa	New 57 kDa glutelin genes on chromosome 9 in rice.	RGN	11	158-161.	1994	GLUP1,GLUP2	Glup1(Esp5, Gup1), Gup1, Esp5, Glup1,glup2(esp6, gup2), esp6, gup2, glup2
449		Satoh, M., M. Miyamoto, I. Andoh, A. Saito and S. Kawasaki	RFLP mapping of resistance genes against rice blast disease I. Pi-b and Pi-z.	Japan. J. Breed.	42(Suppl. 2)	132-133.	1992	PIZ,PIB	Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2,Pi b(Pi s), Pis, Pib, Pi-s, Pi-hy
450		Satoh, M., M. Miyamoto, I. Ando, A. Saito and S. Kawasaki	RFLF mapping of resistance genes against rice blast disease II. Pi-ta2 and Pi-zt.	Japan. J. Breed.	43(Suppl. 2)	221	1993		
451		Second, G.	Origin of the genic diversity of cultivated rice (Oryza spp. ) study of the polymorphism scored at 40 isozyme loci.	Jpn. J. Genet.	57(1)	25-57.	1982	EST8,EST4,EST6,MDH1,GOT3,GOT2,PGD2,EST7,ACP4,POX4	Est8,Est4,Est6,Mdh1,Got3, Aat3,Got2, Aat2,Pgd2,Est7,Acp4,Pox4
452		Seetharaman, R. and D.P. Srivastava	Inheritance of semi-dwarf stature and cigar shaped panicle in rice.	Indian J. Genet. & Plant Breed.	29	220-226.	1969	SD1,CG	sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2, OsPHQ1, OsPHq1, PHq1,cg*, cg
453		Sekiguchi, U., K. Sekizawa, K. Toriyama and Y. Sakurai	Varietal differences of PCBA (Pentachlorobenzyl alcohol)-sensitivity in rice plant.	Bull. Chugoku Agric. Exp. Stn.,  Ser.E	7	1-18.	1972	PCS	pcs
454		Sethi, M. and J.K. Roy	Inheritances of two anatomical characteristics.	RGN	1	108	1984	ESBA,ESBB,FSC	Esba*, Esb1, Esba,Esbb*, Esb2, Esbb,Fsc*(Fc), Fc, Fsc
455	4781370	Setty, M.V.N. and B. Misro	Complementary genic complex for anthocyanin pigmentation in the apiculus of rice (Oryza sativa L.).	Can. J. Genet. Cytol.	15(4)	779-789.	1973	P,A,C	P(Pa,Pb,Pc), A, Pa,A(Sp), Sp, Ap,C, Cp, OsC1, Os-C1, C1, OsMyb6, Myb6, OsPL6, PL6, OsGL1E, GL1E, Os2R_MYB63, 2R_MYB63, OsC1PLSr, C1PLSr
456		Shahjahan, M., T. Imbe, B.S. Jalani, A.H. Zakri and O. Othman	Inheritance of resistance to rice tungro spherical virus in rice (Oryza sativa L.).	Rice Genetics. II. IRRI, Manila, Philippines.		247-254.	1991	TSV1	tsv1(RTSV), RTSV, tsv1
457		Shao, Y. and X-H, Tang	Analysis of restorer genes for photoperiod sensitive male-sterile rice.	RGN	9	52-54.	1992	MS1P,MS2P	ms1P*,ms2P*
458		Shastry, S.V.S., W.H. Freeman, D.V. Seshu, P. Israel and J.K. Roy	Host-plant resistance to rice gall midge.	Symposium on Rice Breeding, IRRI, Los Banos, Philippines.		353-365.	1972	GM	gm1, gm2(pd), pd, gm13
459		Shenoy, V.V., D.V. Seshu and J.K.S. Sachan	Shikimate dehydrogenase-12 allozyme as a marker for high seed protein content in rice.	Crop Sci.	30(5)	937-940.	1990	SDH1	Sdh1, Skd
460		Shibuya, N.	Studies on causal genes of partial male sterility in rice and their utilizasion in testing cool temperature tolerance.	Bull. Yamagata Univ. Agr. Sci.	6	571-625.	1973	MS2,MS3,MS4,MS5,MS6	ms2 (msd), ms2(t)*, ms65, ms2, msd,ms3(ms1), ms1, ms3,ms4(ms2), ms2, ms4,ms5(ms3), ms3, ms5,ms6(ms4), ms6, ms4
461		Shinbashi, N., T. Kinoshita and M. Takahashi	Gibberellin metabolism by the casual genes for 'Hosetsu-dwarf' and 'Tanginbozu-dwarf' (Preliminary report). - Genetical studies on rice plant. LXIII-.	Mem. Fac. Agr. Hokkaido Univ.	9(2)	201-207.	1975	D35	d35, d35(t), dwf30, OsKOL2, KOL2, KO2, OsKO2, OSKO2, KO, CYP701A, CYP701A6, Os KO2, OsKOL2/CYP701A
462		Shinbashi, N., T. Kinoshita, M. Takahashi and K. Hasebe	Genetic aspects of two dwarfs Hosetsu-dwarf and Kotake-tamanishiki, and their character expressions.-Genetical studies on rice plant. LXVI-.	Mem. Fac. Agr. Hokkaido Univ.	10(1)	69-75.	1976	D18,D35	d18-h  (d18-I, d18h), dwf15, d25, d18, d18-k, d18-AD, d18-dy, OsGA3ox2, ga3ox2, OsGA3OX2, GA3OX2, OsGA3ox-2, GA3ox-2, GA3ox1,d35, d35(t), dwf30, OsKOL2, KOL2, KO2, OsKO2, OSKO2, KO, CYP701A, CYP701A6, Os KO2, OsKOL2/CYP701A
463		Shinjyo, C.	Cytoplasmic-genetic male sterility in cultivated rice, Oryza sativa L.	Jpn. J. Genet.	44(3)	149-156.	1969	[CMS-BO],RF1	[cms-bo],Rf1 (Rf-1), rf-1, PPR791, PPR8-1, Rf-1, Rf1, Rf-1A, Rf5, Rf1a, RF5, Rf5(t)*(Rf(t)*), RF1A, PPR6, PLS31, OsPLS31
464		Shinjyo, C.	Genetical studies of cytoplasmic male sterility and fertility restoration in rice, Oryza sativa L.	Sci. Bull. Coll. Agr. Univ. Ryukyus	22	1-57.	1975	PGL,RF1,[CMS-BO],FGL	pgl,Rf1 (Rf-1), rf-1, PPR791, PPR8-1, Rf-1, Rf1, Rf-1A, Rf5, Rf1a, RF5, Rf5(t)*(Rf(t)*), RF1A, PPR6, PLS31, OsPLS31,[cms-bo],fgl(fl), fl, fgl, OsFGL, OsPorB, PoPA, PORA, porA, OsPORA, PORB, OsPORB
465		Shinjyo, C.	Identification of male sterile cytoplasms and fertility genes derived from wild species.	Exploitation and identification of rice gene resources. N. Iwata, ed. (Report of Grant-in-Aid for Scientific Research).		106-111.	1990	RF1,[CMS-UR102],[CMS-UR104],[CMS-UR106],[CMS-UR27],[CMS-UR89]	Rf1 (Rf-1), rf-1, PPR791, PPR8-1, Rf-1, Rf1, Rf-1A, Rf5, Rf1a, RF5, Rf5(t)*(Rf(t)*), RF1A, PPR6, PLS31, OsPLS31,[cms-UR102]*, [cms-UR102],[cms-UR104]*, [cms-UR104],[cms-UR106]*, [cms-UR106],[cms-UR27]*, [cms-UR27],[cms-UR89]*, [cms-UR89]
466		Shinjyo, C., R. Nishime and Y. Watanabe	Inheritance of fertility restoring genes Rfx and Rf in male sterile cytoplasm derived from variety Lead Rice (preliminary report).	Japan. J. Breed.	24(Suppl. 1)	130-131.	1974	RF2	Rf2 (Rfx), Rfx, Rf2
467		Shinoda, H., K. Toriyama, T. Yunoki, A. Ezuka and Y. Sakurai	Studies on the varietal resistance of rice to blast. 6. Linkage relationship of blast resistance genes.	Bull. Chugoku Agric. Exp. Stn.,  Ser.A	20	1-25.	1971	PIB,PIF,PITA,PII,PIK,PIA,PIZ,PII2	Pi b(Pi s), Pis, Pib, Pi-s, Pi-hy,Pi f, PIF, Pif, RMg3, Pi-f,Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30, Trx30,Pi i, Pii, Pi-i, Pii(t),Pik, RMg8, Pi-k, Pik-2, Pik-1, Pik1, Pik2, Pik-H4, Pikp-1, Pikh-1, Pik1-H4, Pikh-2, Pik2-H4,Pi a, Pia, Pi-a, Pia-1, Pia-2,Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2,Pi i2, Pii2, Pii2(t)
468		Shiraishi, M. and H. Satoh	Identification and gene analysis of amylase isozymes in germinating rice seeds.	Japan. J. Breed.	40(Suppl. 1)	454-455.	1990	BAMY1	betaAmy1, BetaAmy1, Amy10
469		Shiraishi, M., H. Satoh, T. Omura and W. Hara	Amylase isozyme polymorphism in rice varieties.	RGN	3	43-44.	1986	BAMY1	betaAmy1, BetaAmy1, Amy10
470		Shrestha, G.L.	Gene location for Gamadiness in rice (Oryza sativa L. ).	Korean J. Crop. Sci.	29	128-135.	1984	SHP4,SHP3	Shp4(Gb), Gb, Shp4,Shp3(Ga), Ga, Shp3
471		Sidhu,G.S. G.S.Khush	Dominance reversal of a bacterial blight resistance gene in some rice cultivars.	Phytopathology	68(3)	461-463	1978	XA3	Xa-3, Xa3 (Xa4b, Xa6, Xa9, Xa w), Xa3, Xaw, Xa6, Xa9, Xa4-b, XA26, Xa26(t), Xa26(t)*, Xa26, RKb, MRKb, MRKB, TRKb, Xa3/Xa26
472		Sidhu,G.S. G.S.Khush	Genetic analysis of brown planthopper resistance in twenty varieties of rice, Oryza sativa L.	Theor. Appl. Genet.	53	199-203	1978	BPH4,BPH3,BPH2,BPH1	bph4,Bph3,bph2,Bph1
473		Sidhu, G.S. and G.S. Khush	Linkage relationship of some genes for disease and insect resistance and semidwarf stature in rice.	Euphytica	28(2)	233-237.	1979	BPH4,GLH3	bph4,Glh3
474		Sidhu, G.S., G.S. Khush and T.W. Mew	Genetic analysis of bacterial blight resistance in seventy-four cultivars of rice, Oryza sativa L.	Theor. Appl. Genet.	53	105-111.	1978	XA4,XA8,XA5,XA7	Xa4, Xa4(Xa4a), Xa-4, Xa4-a, WAK, wak, xa4,xa8,xa5, xa-5, Xa5, TFIIAy, OsTFIIAgamma5, TFIIAgamma5, OsTFIIAgamma5/Xa5,Xa7
475		Sidhu, G.S., G.S. Khush and F.G. Medrano	A dominant gene in rice for resistance to whitebacked planthopper and its relationship to plant characteristics.	Euphytica	28	227-232.	1979	WBPH1	Wph1(Wbph), Wbph1, Wph1
476		Singh, A.P., S.C. Prasad and J.B. Tomar	Linkage between genes governing anthocyanin pigmentation.	Indian J. Agr. Sci.	59(9)	575-578.	1989	PJ,PSH,PAU	Pj,Psh,Pau
477		Singh, B.N. and D.J. Mackill	Genetics of leaf rolling under vegetative stage drought stress.	RGN	6	112-115.	1989	LR	lr(t)*, lr
478		Singh, J.P., M.P. Pandey and P.K. Pathak	Inheritance of resistance to whitebacked planthopper, Sogatella furcifera (Horvath) in some rice cultivars.	Euphytica	46(2)	95-100.	1990	WBPH5	Wph5
479		Singh, K., D.S. Multani and G.S. Khush	A new brittle culm mutant in rice.	RGN	11	91-92.	1994	BC6	Bc6*, Bc6, OsCesA9, CESA9, OsCESA9, OS_CESA09, OsCesA 9, CesA9, BC88, SDBC1, OsSDBC1
480		Singh, R.J., G.S. Khush and T.W. Mew	A new gene for resistance to bacterial blight in rice.	Crop Sci.	23(3)	558-560.	1983	XA8,XA4,XA7,XA3,XA5	xa8,Xa4, Xa4(Xa4a), Xa-4, Xa4-a, WAK, wak, xa4,Xa7,Xa-3, Xa3 (Xa4b, Xa6, Xa9, Xa w), Xa3, Xaw, Xa6, Xa9, Xa4-b, XA26, Xa26(t), Xa26(t)*, Xa26, RKb, MRKb, MRKB, TRKb, Xa3/Xa26,xa5, xa-5, Xa5, TFIIAy, OsTFIIAgamma5, TFIIAgamma5, OsTFIIAgamma5/Xa5
481		Siwi, B.H. and G.S. Khush	New genes for resistance to the green leafhopper in rice.	Crop Sci.	17(1)	17-20.	1977	GLH2,GLH4,GLH5,GLH3	Glh2,glh4,Glh5,Glh3
482		Suge, H.	Complementary genes for height inheritance in relation to gibberellin production in rice plants.	Jpn. J. Genet.	50(2)	121-131.	1975	D35	d35, d35(t), dwf30, OsKOL2, KOL2, KO2, OsKO2, OSKO2, KO, CYP701A, CYP701A6, Os KO2, OsKOL2/CYP701A
483		Suge, H.	The genetic control of gibberellin production in rice.	Jpn. J. Genet.	53(3)	199-207.	1978	D35	d35, d35(t), dwf30, OsKOL2, KOL2, KO2, OsKO2, OSKO2, KO, CYP701A, CYP701A6, Os KO2, OsKOL2/CYP701A
484		Suge, H.	Survey of endogenous gibberellins in rice lines having different dwarfing genes and in autoteraploid lines.	Japan. J. Breed.	40(1)	21-31.	1990	D35,D18	d35, d35(t), dwf30, OsKOL2, KOL2, KO2, OsKO2, OSKO2, KO, CYP701A, CYP701A6, Os KO2, OsKOL2/CYP701A,d18-h  (d18-I, d18h), dwf15, d25, d18, d18-k, d18-AD, d18-dy, OsGA3ox2, ga3ox2, OsGA3OX2, GA3OX2, OsGA3ox-2, GA3ox-2, GA3ox1
485		Suh, H.S. and M.H. Heu	The segregation mode of plant height in the cross of rice varieties. XI. Linkage analysis of the semi-dwarfness of the rice variety 'Tongil'.	Korean J. Breed.	10(1)	1-6.	1978	SD1	sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2, OsPHQ1, OsPHq1, PHq1
486		Suh, H.S., J.C. Koh and S.K. Lee	Identification of four genes for genetic male sterility in rice.	S. Iyama and G. Takeda (eds.), Proc. 6th Internat. Congress of SABRAO.	I	317-320.	1989	MS IR36(T)*,MS M55(T)*,MS M77(T)*,MS M67(T)*(MS18)	ms IR36(t)*), msIR36, ms66, MS IR36,ms m55(t)*, MS M55, msm55(t)*, ms67, ms55,ms m77(t)*, ms69, msm77(t)*, MS M77, msm77,ms m67(t)*(ms18), ms68, msm67(t)*, ms18
487		Suh, H.S., J.D. Kim., M.H. Heu and G.S. Chung	Linkage relationships between genetic male sterile and marker genes in rice.	Rice Genetics. II. IRRI, Manila, Philippines.		121-125.	1991	MS M67(T)*(MS18),MS M54(T)*,MS M77(T)*	ms m67(t)*(ms18), ms68, msm67(t)*, ms18,ms m54(t)*,ms m77(t)*, ms69, msm77(t)*, MS M77, msm77
488		Sujadi, S. and  G.S. Khush	Studies on linkage relations of genes controlling disease and insect resistance and nature of endosperm in rice.	Euphytica	26(2)	337-342.	1977		
489		Sun, Z.X., S.K.Min & Z,M,Xiong	A temperature-sensitive male-sterile line found in rice.	RGN	6	116-117	1989	TMS1	tms1 (TGMS), ms80, tms-1, tms(t)
490		Sur, S.C. and G.S. Khush	Chromosomal location of Xa-4 gene.	RGN	1	98-99	1984	XA4	Xa4, Xa4(Xa4a), Xa-4, Xa4-a, WAK, wak, xa4
491		Suzuki, Y., T. Nagamine, A. Kobayashi and K. Ohtsubo	Detection of a new rice variety lacking lipoxygenase-3 by monoclonal antibodies.	Japan. J. Breed.	43	405-409.	1993	LOX3	Lox3*, lox3(t), LOX-3, Lox3, OsLOX4, LOX4
492		Suzuki, Y., T. Nagamine and K. Okuno	Genetic analysis of lipoxygenase-3 content in rice embryos by monoclonal antibodies.(in Japanese)	Japan. J. Breed.	43(Suppl. 2)	142	1993	LOX3	Lox3*, lox3(t), LOX-3, Lox3, OsLOX4, LOX4
493		Syakudo, K. and T. Kawase	Studies on the quantitative inheritance (11). A. Rice (Oryza sativa L.) (d) Inheritance of the heading duration and the quantitative function of the causal genes in its determination. (1) On the quantitative function of he genes E1, E2 and D1.	Japan. J. Breed.	3(2)	6-12.	1953	E2,E1	,E1 (=m Ef1+), mEf1+, Hd4(t), m Ef1-a, m Ef1-b
494		Syakudo, K., T. Kawase and K. Yoshino	Studies on the quantitaive inheritance (13). A. Rice (Oryza sativa L.) (b) Inheritance of the heading period and the quantitative function of the causual genes in its determination. (2) On the quantitative function of the genes E3, E4 and E5.	Japan. J. Breed.	4(2)	83-90	1954	E3	
495		Takahashi, M.	Genetical studies on rice plant. XXII. Genes for localization of anthocyanin pigment in stigma.	Japan. J. Breed.	8(3)	142-148.	1958	PS1	Ps1
496		Takahashi, M.	Gene analysis and its related problems. -Genetical studies on rice plant, LXXX-.	J. Fac. Agr. Hokkaido Univ.	61(1)	91-142.	1982	PL	Pl, Pl1
497		Takahashi, M. and W. Tate	Compact-paniculous sterile	Japan. J. Breed.	1(2)	119-124.	1951	CPS	cps
499		Takahashi, M., T. Kinoshita and K. Takeda	Character expression and causal genes of some mutants in rice plant. (Genetical studies on rice plant, XXXIII).	J. Fac. Agr. Hokkaido Univ.	55(4)	496-512.	1968	BL5,BL6,CLW,D13,MLS1,MLS2,YSL,FS2,BL4,BC2,ER,BL3,LA,D12	bl5,bl6,clw,d13, dwf12,mls1,mls2,ysl,fs2,bl4,bc2, bc-2,er(o), o, er,bl3,la,d12(d50), dwf11, d50, d12, d32, F71, DMT9
500		Takahashi, M., T. Mori, T. Kinoshita and K. Mori	Genic constitution on red coloration in rice grains of an Indian variety, Surjamkhi. (Genetical studies of rice plant, L.).	Res. Bull. Univ. Farm Hokkaido Univ.	18	47-53.	1972	RC	Rc, OsbHLH017, OsbHLH17, SD7-1, qSD7-1/qPC7, OsGL3C, GL3C
501		Takahashi, N.	Physicogenetical studies on germination of rice seeds with special reference to the genetical factors governing germination.	Bull. Inst. Agr. Res., Tohoku Univ.	14(1)	1-87.	1962	SDRA,SDRB,SG	Sdra (Sd), Sdra, Sdua, Sdr6,Sdrb, Sdub, Sdr7,Sg
506		Takamure, I.	Genetic studies on several mutants related to morphological and physiological characters in rice.	Mem. Fac. Agr. Hokkaido Univ.	19(2)	151-202.	1994	LHS1,RCN4,RCN3,MI,LKF,LKI1,RCN2,MLS3,RCN1,D58	OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO, OsLHS1, OsLG3b, LG3b, qLGY3, LGY3, DLN80, OsDLN80, OLR, OsOLR, GW3p6, OsGW3p6, OsMADS1GW3p6, MADS1GW3p6, qLGY3/OsLG3b/GW3p6,rcn4,rcn3,Mii, Mi1,Lk f, Lkf,lk i1, lki1, lk-i-1,rcn2,mls3,rcn1,d58, dwf39
507		Takamure, I. and T. Kinoshita	Genetical relation between Lk-f and Mi genes concerning with grain size. -Genetical studies on rice plant, LXXXVII-.	Mem. Fac. Agr. Hokkaido Univ.	14(1)	1-10.	1983	LKF,MI	Lk f, Lkf,Mii, Mi1
508		Takamure, I. and T. Kinoshita	Inheritance and expression of reduced culm number character in rice. Genetical studies on rice plant, LXXXIX.	Japan. J. Breed.	35(1)	17-24.	1985	RCN1	rcn1
509		Takamure, I. and T. Kinoshita	A temperature-sensitive dwarf mutants showing a haploid-like feature in rice.	RGN	3	99-100.	1986	D58	d58, dwf39
510		Takamure, I. and T. Kinoshita	Linkage analysis of the long grain gene   (Lk-i) derived from rice variety 'IRAT 13'.	Japan. J. Breed.	39(Suppl. 2)	316-317.	1989	LKI1	lk i1, lki1, lk-i-1
511		Takamure, I. and T. Kinoshita	Gene mapping of Fusayoshi long grain    (Lk-f) located on the XI + XII linkage group in rice.	Japan. J. Breed.	40(Suppl. 1)	462-463.	1990	LKF	Lk f, Lkf
512		Takamure, I. and T. Kinoshita	Linkage analysis in chromosomes 3 and 6.	RGN	8	98-100.	1991	D20,AN3,LKF,MI,D58	d20, dwf17,An3,Lk f, Lkf,Mii, Mi1,d58, dwf39
513		Takamure, I. and T. Kinoshita	Modification of glume characters due to genic interactions and environmental conditions.	RGN	9	85-88.	1992	G1,G2,MLS3	g1 (lng), lng, g1, ELE, Os ELE, OsG1, G1/ELE, LSL2, OsLSL2,G2(Gm, Gl), Gl, Gm,mls3
514		Takamure, I. and T. Kinoshita	Inheritance of six kinds of mutants induced by gamma-ray irradiation to anther culture of rice.	Mem. Fac. Agr. Hokkaido Univ.	18(4)	437-446.	1993	MIK	mi k, mik, mi2
515		Takamure, I. and T. Kinoshita	Genic analysis of reduced culm number mutants induced by gamma-ray irradiation in rice.	Mem. Fac. Agr. Hokkaido Univ.	18(4)	447-454.	1993	RCN4,RCN6,RCN2,RCN5	rcn4,rcn6,rcn2,rcn5
516		Takamure, I. and T. Kinoshita	Genic analysis for a small grain mutant induced from cultivar Kitaake.	RGN	11	89-91.	1994	MIK	mi k, mik, mi2
517		Takamure, I. and T. Kinoshita	Determination of loci for two reduced culm number mutants and a malformed spikelet in rice.	Breeding Science	44(Suppl. 1)	214	1994	LKI1,RCN2,MLS3,RCN1,HLA,D58	lk i1, lki1, lk-i-1,rcn2,mls3,rcn1,Hla, Hl1,d58, dwf39
518		Takamure, I., K. Kato and T. Kinoshita	Character expression and gene identification of three mutants responsible for reduced culm number type.	Mem. Fac. Agr. Hokkaido Univ.	16(3)	287-294.	1989	RCN3,RCN2	rcn3,rcn2
519		Takamure, I., T. Yamamoto and T. Kinoshita	Determination of loci for Mi (Minute gain) and Lk-f (Fusayoshi long grain) on the 3rd linkage group in rice.	Japan. J. Breed.	41(Suppl. 1)	322-323.	1991	D20,AN3,MI	d20, dwf17,An3,Mii, Mi1
520		Takamure, I., T. Yamamoto, S. Niikura and T. Kinoshita	Inheritance and expression of a leafy head mutant in rice.	Breeding Science	45(Suppl. 1)	99	1995	LK1,LKF,MI,LK2	lk1(t), lkna, lk1,Lk f, Lkf,Mii, Mi1,Lk2(t) (Lknb), Lknb, Lk2
521		Takeda, K.	Open hull male sterile mutant in rice.	RGN	4	78-79.	1987	OMS	oms
522		Takeda, K.	Inheritance of grain size and its implications for rice breeding.	Rice Genetics. II. IRRI, Manila, Philippines.		181-189.	1991	LKF,MI	Lk f, Lkf,Mii, Mi1
523		Takeda, K. and K. Saito	The inheritance and character expression of the minute gene derived from a rice genetic tester Minute.	Bull. Fac. Agr. Hirosaki Univ.	27	1-29.	1977	MI	Mii, Mi1
524		Takeda, K. and K. Saito	Major genes responsible for grain shape in rice.	Japan. J. Breed.	30(3)	280-282.	1980	LKF,MI	Lk f, Lkf,Mii, Mi1
525		Takeda, K. and T. Kato	Duplicate genes controlling long grain of a rice variety IRAT13.	RGN	9	59-60.	1992	LKI2,LKI1	lki2,lk i1, lki1, lk-i-1
526		Takita, T.	Gene analysis for resistance to green rice leafhoppers.	RGN	7	117-118.	1990	GRH2,GRH1	Grh2,Grh1
527		Tamaru, N.	Breeding studies on genetic male sterility and hybird sterility in rice (Oryza sativa L.).	Mem. Fac. Agr. Hokkaido Univ.	19(2)	203-256.	1994	MS18,MS19,MS20,MS21,MS22,MS23,MS24,MS25,MS26,MS27,MS28,MS30,MS31,MS32,MS33,MS34,MS35,MS36,MS37,MS38,MS39,MS40,MS41,MS42,MS43,MS45,MS44	ms18(t)*, ms18(t), ms18,ms19(t)*, ms19(t), ms19,ms20(t)*, ms20(t), ms20,ms21(t)*, ms21(t), ms21,ms22(t)*, ms22(t), ms22,ms23(t)*, ms23(t), ms23,ms24(t)* (=ms29), ms24(t), ms24,ms25(t)*, ms25(t), ms25,ms26(t)*, ms26(t), ms26,ms27(t)*, ms27(t), ms27,ms28(t)*, ms28(t), ms28,ms30(t)*, ms30,ms31(t)*, ms31,ms32(t)*, ms32,ms33(t)*, ms33,ms34(t)*, ms34,ms35(t)*, ms35,ms36(t)*, ms36,ms37(t)*, ms37,ms38(t)*, ms38,ms39(t)*, ms39,ms40(t)*, ms40,ms41(t)*, ms41,ms42(t)*, ms42,ms43(t)*, ms43,ms45(t)*, ms45,ms44(t)*, ms44
528		Tamura, K., I. Ohshima, K. Okada, Y. Morooka, N. Nomura, H. Namai, H. Kato, R. Ikeda and F. Kikuchi	Linkage analysis of a photoperiod-sensitive gene Se-1 locus with neighbouring loci in rice.	Breeding Science	44(Suppl. 1)	213	1994	SE1	Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, OsHd1,  Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21
529		Tamura, K., M. Yano, T. Sasaki, K. Nomura, H. Namai and F. Kikuchi	Linkage analysis using RFLP for a photoperiod-sensitive gene Se-1 locus with neighboring loci in rice.	Breeding Science	45(Suppl. 1)	82	1995	SE1	Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, OsHd1,  Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21
530		Tanaka, H., A. Nakamura, S. Oba and F. Kikuchi	Genetic analysis for semidwarfism of induced mutant in rice (Oryza sativa L).	Japan. J. Breed.	42(Suppl. 1)	576-577.	1992	SD9	sd9(t), sd9, sd(t)*
531		Tang, S.X., G.S. Khush and B.O. Juliano	Genetics of gel consistency in rice (Oryza sativa L. ).	J. Genet.	70(2)	69-78.	1991	GLC	glc
532		Tanisaka, T., M. Tomita and H. Yamagata	Gene analysis for the semidwarfism of two mutant strains, Hokuriku 100 and Kanto 79, induced from a rice variety Koshihikari. -Studies on the utility of artificial mutations in plant breeding XVIII.	Japan. J. Breed.	40	103-117.	1990	D60,GAL	d60 (sd(t)), sd(t), dwf41, d60,gal(lt), It-m, lt, gal
533		Tanisaka, T., N. Takemori, T. Yabu, H. Egashira, Y. Okumoto and H. Yamagata	Two useful semidwarf genes in a short-culm mutant line HS90 of rice.	Breeding Science	44	397-403.	1994	SD1,SD9	sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2, OsPHQ1, OsPHq1, PHq1,sd9(t), sd9, sd(t)*
534		Tanksley, S., M. Causse, T. Fulton, N. Ahn, Z. Wang, K. Wu, J. Xiao, Z. Yu, G. Second and S. McCouch	A high density molecular map of the rice genome.	RGN	9	111-115.	1992		
535		Tanksley, S.D., T.M. Fulton and S.R. McCouch	Linkage map of rice    (Oryza sativa) (2N=24).	Genetic Maps, Locus Maps of Complex Genomes, Plants. S.J. O'Brien ed. Cold Spring Harbour Lab. Press.	Book 6	61-79.	1993	RC,PI6,XA5,PR,SK2(T)(SCL, FGR),ATP,XA21,CYC1,SALT,R45S1,LEC,PGD1,ACP4,EST7,WBPH1,R5S1,MAL1,PI30,PI11,LRT2,ACT1,LAX1,WX1,BHC	Rc, OsbHLH017, OsbHLH17, SD7-1, qSD7-1/qPC7, OsGL3C, GL3C,Pi6(t)*, Pi6, Pi-6(t), pi6(t),xa5, xa-5, Xa5, TFIIAy, OsTFIIAgamma5, TFIIAgamma5, OsTFIIAgamma5/Xa5,Pr(Rp), Rp, Pr,sk2(t)(scl, fgr), fgr, scl, BAD2, BADH2, sk2, OsBADH2, Badh2, badh2, Os2AP, BADH-2, OsALDH10A8, ALDH10A8 ,ATP*(atp1), ATPX, atp1,Xa21*, Xa21, OsXA21,cyc1*, cyc1,salT*(sal1), SalT1*, sal1, Sal1, SALT, ML, SalT, OsSalT, OsJRL, JRL, Osl43, OsL43, OsMBL1, MBL1, OsJRL01, JRL01, OsJRL1, JRL1,R45s1*(rDNA1), rDNA1, r45s, R45s1,Lec*, Lec,Pgd1, 6Pgd1,Acp4,Est7,Wph1(Wbph), Wbph1, Wph1,R5s1*, r5s, R5s1,Mal1, Mal I, Mal-I, Mal-1,Pi-30(t), Pi30(t),Pi11(t)*(Pi zh), Pi11(t)*, Pizh, Pi-zh, Pi-zh*, Pi-zh(t), Pi-11(t), Pi-11, Pi11,CYC2, cyc2*, cyc2, OsCYP2, Cyp2, OsCYP19-2, CYP19-2, OsCYP-2, OsCyp2-P, OsCyp2, OsCYP19-1, LRT2/OsCYP2, lrt2*, lrt2, Ppcti ,act1, AC1, RAC1, RAc1, ACT11, OsACT1,lax, lax(lx), lx, OsbHLH123, bHLH123, OsLAX1, BOS1, OsBOS1,wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx,Ph=Bhc(Po), Bhc, Po, Ph, Bh3, PPO, Phr1, BH1
536		Taura, S., T. Ogawa, R.E. Tabien, G.S. Khush, A. Yoshimura and T. Omura	The specific reaction of Taichung Native 1 to Philippine race of bacterial blight and inheritance of resistance to race 5 (PX0112).	RGN	4	101-102.	1987	XA14	Xa14
537		Taura, S., A. Yoshimura, T. Ogawa, R. Ikeda and T. Omura	Studies on mutation breeding for resistance to bacterial blight in rice. I. Induction of resistant mutants and its genetic analysis.	Japan. J. Breed.	39(Suppl. 1)	362-363.	1989	XA19,XA20,XA14	xa19,xa20,Xa14
538		Taura, S., T. Ogawa, A. Yoshimura, R. Ikeda and T. Omura	Identification of a recessive resistance gene in induced mutant line XM5 of rice to rice bacterial blight.	Japan. J. Breed.	41(3)	427-432.	1991	XA19	xa19
539		Taura, S., T. Ogawa, A. Yoshimura, R. Ikeda and N. Iwata	Identification of a recessive resistance gene to rice bacterial blight of mutant line XM6, Oryza sativa L.	Japan. J. Breed.	42	7-13.	1992	XA20	xa20
540		Teng, L.S. and Z.T. Shen	Inheritance of fertility restoration for cytoplasmic male sterility in rice.	RGN	11	95-97.	1994	RF3,RF4	Rf3* (R2, Rf2), Rf2, R2, Rf3, Rf-3,Rf4* (R1, Rf1), R1, Rf1, RfWA1, Rf4
541		Teraishi, M., T. Komori, Y. Okumoto, T. Nakazaki, H. Yamagata and T. Tanisaka	Studies on the utilization of a mutator induced in rice. 8. RFLP mapping of mutable slender-glume.	Breeding Science	44(Suppl. 1)	231	1994	SLG	slg, Rurm1, Urm1, OsSUMO7, SUMO7
542		Thakur, R.	Linkage relationship of long palea in rice.	RGN	1	110	1984	RL6	rl6(t), cul13
543		Thakur, R. and R.P. Roy	Linkage studies in Indica rice, Oryza sativa L.	Euphytica	24(2)	511-516.	1975	LP2,UNA,LP1,UNB	lp2,Una, Un1,lp1,Unb, Un2
544		Thakur, R. and D.H.R. Lambers	Inheritance of plant elongation ability at seedling stage in rice.	Euphytica	41(3)	227-233.	1989	EL	El*, El
545		Tomar, J.B. and Shiksha, D. Tomar	Genetic analysis of resistance to green leafhopper in rice.	Plant Breeding	98(1)	47-52.	1987	GLH6	Glh6
546		Tomita, M. and H. Yamagata	Pollen sterility induced by a gamete-killing gene.	Japan. J. Breed.	37(Suppl. 1)	178-179.	1987		
547		Tomita, M., T. Tanisaka and H. Yamagata	Genetical analysis for semi-dwarfness of rice. 5. Early-heading gene and gametic lethal gene to semi-dwarfness in Kanto 79.	Japan. J. Breed.	36(Suppl. 2)	258-259.	1986		
548		Tomita, M., T. Tanisaka, K. Okumoto and H. Yamagata	Linkage analysis for gametic lethal gene of a rice variety Koshihikari and the semidwarf gene induced in Koshihikari.	S. Iyama and G. Takeda (eds.), Proc. 6th Internat. Congress of SABRAO.	I	345-348.	1989	D60,GAL	d60 (sd(t)), sd(t), dwf41, d60,gal(lt), It-m, lt, gal
549		Toriyama, K.	Genetics of and breeding for resistance to rice virus diseases.	In The Virus Diseases of the Rice Plant. Proceed. Symp IRRI 1967, John Hopkins Press		313-334.	1969	TUVB,HBV,TUVA	Tuvb, Tuv4,Hbv,Tuva, Tuv3
550		Toriyama, K.	Breeding for resistance to major rice disease in Japan.	Symposium on Rice Breeding, IRRI, Los Banos, Philippines.		253-281.	1972	PIF	Pi f, PIF, Pif, RMg3, Pi-f
551		Tripathi, R.S. and M.J.B.K. Rao	Inheritance and linkage relationship of scent in rice.	Euphytica	28	319-323.	1979	SK1	Sk1, Fgr
552		Tripathi, R.S. and M.J. Balakrishna Rao	Inheritance studies of characters associated with floating habit and their linkage relationship in rice.	Euphytica	34	875-881.	1985	ND,NR1,NR2	Nd*, Nd,Nr1*, Nr1,Nr2*, Nr2
553		Tsai, K.H.	Studies on earliness genes in rice, with spacial reference to analysis of isoalleles at the Ef locus.	Jpn. J. Genet.	51(2)	115-128.	1976	EF1,E1	Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,E1 (=m Ef1+), mEf1+, Hd4(t), m Ef1-a, m Ef1-b
554		Tsai, K.H.	Unusual segregation patterns found at the m-Ef locus.	RGN	1	115-116.	1984	E1	E1 (=m Ef1+), mEf1+, Hd4(t), m Ef1-a, m Ef1-b
555		Tsai, K.H.	Further observations on the Ef-1 gene for early heading.	RGN	2	77-78.	1985		
556		Tsai, K.H.	Genes controlling heading time found in a tropical Japonica variety.	RGN	3	71-72.	1986	EF1,EF2,EF3,EF4	Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,ef2 (=lf-1), ef2(t) (lf1), lf1, ef2,ef3(t), ef3,ef4, ef4(t)
557		Tsai, K.H.	An induced dwarfing gene, sd-7(t), obtained in Taichung 65.	RGN	6	99-101.	1989	SD7	sd7, sd7(t)
558		Tsai, K.H.	Unusual mode of inheritance of heading time and occurrence of weak plants observed in rice.	Japan. J. Breed.	40(2)	133-146.	1990	EF2,EF3	ef2 (=lf-1), ef2(t) (lf1), lf1, ef2,ef3(t), ef3
559		Tsai, K.H.	Tight linkage of gene sd-7(t) and d1 found in a cross of Taichung 65 isogenic lines.	RGN	8	104	1991	SD7	sd7, sd7(t)
560		Tsai, K.H.	Chromosomal location of gene sd-1 examined with isogenic translocation lines of Taichung 65.	RGN	8	109-110.	1991	SD1	sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2, OsPHQ1, OsPHq1, PHq1
561		Tsai, K.H.	Multiple alleles detected at locus sd-1.	RGN	8	112-113.	1991	SD1	sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2, OsPHQ1, OsPHq1, PHq1
562		Tsai, K.H.	Genes for late heading and their interaction in the background of Taiching 65.	Rice Genetics. II. IRRI, Manila, Philippines.		211-215.	1991	EF2,EF3,EF4	ef2 (=lf-1), ef2(t) (lf1), lf1, ef2,ef3(t), ef3,ef4, ef4(t)
563		Tsai, K.H.	Detection of a new semi-dwarfing gene, sd-8(t).	RGN	11	80-83.	1994	SD8	sd8(t), sd8
564		Tsai, K.H.	Lateness lines with ef-1 alleles produced from a cross between two early rice varieties having Ef-1 alleles.  In Toward enhanced and sustainable agricultural productivity in 2000's: Breeding research and biotechnology. 	Proc. 7th Intern. Congress SABRAO & Intern Symp. WSAA, Taichung District Agricultural Improvement Station, Taiwan, R.O.C.	I.	101-108.	1994	EF1	Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 
565		Tsai, K.H.	Genetic analysis for heading time in wild rice strains.	Jpn. J. Genet.	70	555-562.	1995	SE6,SE7,EF1	se6(t),se7(t),Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 
566		Tsai, K.H. and H.I. Oka	Genetic studies of yielding capacity and adaptability in crop plants. 2. Analysis of genes controling heading time in Taichung 65 and other rice varieties.	Bot. Bull. Acad. Sin.	72(2)	54-70.	1966	EF1,SE12	Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,Se12
567		Tsunematsu, H., H. Hasegawa, S. Yoshimura, A. Yoshimura and N. Iwata	Rice RFLP/RAPD linkage map by using RI (recombinant inbred) lines.  In Toward enhanced and sustainable agricultural productivity in 2000's: Breeding research and biotechnology. 	Proc. 7th Intern. Congress SABRAO & Intern Symp. WSAA, Taichung District Agricultural Improvement Station, Taiwan, R.O.C.	II.	475-478.	1994		
568		Tsuzuki, E. and E. Shimokawa	Inheritance of aroma in rice.	Euphytica	46(2)	157-159.	1990	SK1	Sk1, Fgr
569		Uemura, Y.J., H. Satoh, M. Ogawa and A. Yoshimura	Mapping of genes for glutelin basic subunit polypeptides in cultivated rice.	Breeding Science	44(Suppl. 2)	175	1994	GLU5,GLU6,GLU7,GLU8	Glu5t*(Glu5), Glu5, Glu5t, Glu5t*,Glu6t*(Glu6,GluB,C,E), GluE, GluB, Glu6t*, GluC, Glu6t, Glu6, Glu17,Glu7t*(Glu7,GluA), GluA, Glu7t, Glu7, Glu18,Glu8t*(GluE)
570		Van Deynze, A.E., J. Dubcovsky, K.S. Gill, J.C. Nelson, M.E. Sorrells, J. Dvorak, B.S. Gill, E.S. Lagudah, S.R. McCouch and R. Appels	Molecular-genetic maps for group 1 chromosomes of Triticeae species and their relation to chromosomes in rice and oat.	Genome	38	45-59.	1995		
571		Virmani, S.S., K. Govinda Raj, C. Casal, R.D. Dalmacio and P.A. Aurin	Current knowledge of and outlook on cytoplamic-genetic male sterility and fertility restoration in rice.	Rice Genetics. IRRI, Manila, Philippines.		633-647.	1986		
572		Wan, J. and H. Ikehashi	A new locus for hybrid sterility in remote crosses of cultivated rice (Oryza sativa L). VI.	Breeding Science	45(Suppl 1)	103	1995	S7	S7
573		Wan, J., S. Yanagihara, H. Kato and H. Ikehashi	A new locus for hybrid sterility in remote crosses of cultivated rice (Oryza sativa L.). III. S-9(t).	Japan. J. Breed.	43(Suppl. 1)	146	1993	S9,EST1	,Est1
574		Wan, J., S. Yanagihara, H. Kato and H. Ikehashi	Multiple alleles at a new locus causing hybrid sterility between a Korean Indica variety and Javanica variety in rice (Oryza sativa L.).	Japan. J. Breed.	43	507-516.	1993	S5,S8,EST2,S7	S5-3, S5-4,,Est2, Est_2,S7
575		Wan, J., S. Yamaguchi, H. Kato and H. Ikehashi	A new locus for hybrid sterility in remote crosses of cultivated rice (Oryza sativa L.) IV. S-10(t).	Breeding Science	44(Suppl. 1)	216	1994	S15	S15(S10), S10
576		Wan, J., H. Kato and H. Ikehashi	A new locus for hybrid sterility in remote crosses of cultivated rice (Oryza sativa L.).V. S-16(t).	Breeding Science	44(Suppl. 2)	184	1994	S16	
577	7912216	Wang, G.L., D.J. Mackill, J.M. Bonman, S.R. McCouch, M.C. Champoux and R.J. Nelson	RFLP mapping of genes conferring complete and partial resistance to blast in a durably resistance rice cultivar.	Genetics	136	1421-1434.	1994	PIZ,PI11,PI5-2,PI7,PI3	Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2,Pi11(t)*(Pi zh), Pi11(t)*, Pizh, Pi-zh, Pi-zh*, Pi-zh(t), Pi-11(t), Pi-11, Pi11,Pi3, Pi5, Pi-3(t), Pi-3, Pi3(t), Pi5(t), Pi5-2, Pii,  RMg22, RMg21,Pi7, Pi-7(t), Pi7(t),Pi3, Pi5, Pi-3(t), Pi-3, Pi3(t), Pi5(t), Pi5-1, Pii,  RMg22, RMg21
578		Wang, X., M. Wang, G. Mei, H. Wu, W. Duan and W. Wang	Photoperiod-conditioned male sterilty and its inheritance in rice.	Rice Genetics. II. IRRI, Manila, Philippines.		217-226.	1991	PMS1	pms1*(Pms1,pgms,ms1P), pms1*, Pms1, ms1-P, pms1(t)*, pms1(t)
579		Washio, O., K. Toriyama, A. Ezuka and Y. Sakurai	Studies on the breeding of rice varieties resistant to stripe disease II. Genetic study on resistance to stripe disease in Japanese upland rice.	Japan. J. Breed.	18(2)	96-101.	1968	STVA,STVB	Stva(St1), St1, Stva, Stv1,Stvb(St2), St2, Stvb, Stv2
580		Washio, O., K. Toriyama and A. Ezuka	Studies on the breeding of rice varieties resistant to stripe disease III. Genetic study on resistance to stripe disease in foreign varieties.	Japan. J. Breed.	18(3)	167-172.	1968	STVA,STVB	Stva(St1), St1, Stva, Stv1,Stvb(St2), St2, Stvb, Stv2
581		Washio, O., A. Ezuka, K. Toriyama and Y. Sakurai	Testing method for genetics of and breeding for resistance to rice stripe disease.	Bull. Chugoku Agric. Exp. Stn.,  Ser.A	16	39-197.	1968	STVA,STVB	Stva(St1), St1, Stva, Stv1,Stvb(St2), St2, Stvb, Stv2
582		Watanabe, Y.	Establishment of cytoplasmic and genetic male-sterile lines by means of Indica-Japonica cross.	Oryza Cuttack	8(2) Suppl.	9-16.	1971	[CMS-ID],RF2	[cms-ld],Rf2 (Rfx), Rfx, Rf2
583		Wu, C.F. and G.S. Khush	A new dominant gene for resistance to whitebacked planthopper in rice.	Crop Sci.	25(3)	505-509.	1984	WBPH5	Wph5
584	3408480	Wu, K.S., J.C. Glaszmann and G.S. Khush	Chromosomal locations of ten isozyme in rice (Oryza sativa L.) through trisomic analysis.	Biochem. Genet.	26	303-320.	1988	EST5,GOT1,ICD1,AMP1,CAT1,POX5,AMP2,PGD1,POX2,ACP2,ACP1,AMP4	Est5,Got1, Aat1, OsAAT, GOT-A,Icd1,Amp1(Lap1,LapF), LapF, Lap1, Amp1,Cat1, Cat_1,Pox5,Amp2(AlapA), Lap2, AlapA, Amp_2, Amp-2, Amp2,Pgd1, 6Pgd1,Pox2,Acp2,Acp1,Amp4
585		Xiao, J., T. Fulton, S. McCouch, S. Tanksley, N. Kishimoto, R. Ohsawa, Y. Ukai and A. Saito	Progress in integration of the molecular maps of rice.	RGN	9	124-128.	1992		
586		Yabu, T., N. Takemori and T. Tanisaka	Genetical analysis for semidwarfism of rice. 16. Gene analysis for semidwarfism of a variety Fujisaka 5.	Breeding Science	44(Suppl. 1)	215	1994	SD9	sd9(t), sd9, sd(t)*
587		Yabuno, T.	Genetic studies on the interspecific cytoplasm substitution lines of japonica varieties of Oryza sativa L.and O. glaberrima Steud.	Euphytica	26	451-463.	1977	[CMS-AK]([CMS-JP]),RF AK(RFJ)	[cms-ak]([cms-jp]), [cms-jp], [cms-ak],Rf ak(Rfj), Rf7, Rfak, Rfj
588		Yamada, T.	Multiple alleles at the Xa-1 and Xa-kg loci for resistance to bacterial leaf blight.	RGN	1	97-98.	1984	XA12	Xa12(Xa kg), Xakg, Xa12
589		Yamada, T. and O. Horino	Studies on genetics and breeding of resistance to bacterial leaf blight in rice. V. The multiple alleles resistant to the bacterial groups I and V of X. campestris pv. oryzae of Japan in the varieties IR28, IR29 and IR30.	Japan. J. Breed.	31(4)	423-431.	1981	XA1,XA12	Xa1(Xe), Xe, Xa1, Xa-1,Xa12(Xa kg), Xakg, Xa12
590		Yamamoto, T. and T. Ogawa	Personal communication.	(Refer to RGN 6: 4)			1989	XA18	Xa18
591		Yanagihara, S., H. Kato and H. Ikehahi	A new locus for multiple alleles causing hybrid sterility between an Aus variety and Javanica varieties in rice (Oryza sativa L.).	Japan. J. Breed.	42	793-801.	1992	S7	S7
592		Yanagihara, S., J. Wan, H. Kato and H. Ikehasi	A new locus for hybrid sterility in remote crosses of cultivated rice (Oryza sativa L.) II.	Japan. J. Breed.	42(Suppl. 2)	216-217.	1992	S8,S7	,S7
593		Yanagihara, S., S.R. McCouch, K. Ishikawa, Y. Ogi, K. Maruyama and H. Ikehashi	Molecular analysis of the inheritance of the S-5 locus, conferring wide compatibility in Indica/Japonica hybrids of rice (O.sativa L.).	Theor. Appl. Genet.	90	182-188.	1995	EST2,PGI2,ALK,SE1,S5	Est2, Est_2,Pgi2(Pgib), Pgib, Pgi_2, Pgi2, GPI-B, PGI-B, PHI-B, Pgi-b, PGI-b, SIS, OsSIS, OsPGI2,alk, SSII-3, OsSSIIa, OsSSII-3, SSIIa, SSS2A, OsSSIIaChr6, SS2a,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, OsHd1,  Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,S5-3, S5-4
594		Yang, R.C., K. Liang, N. Wang and S. Chen	A recessive gene in Indica rice 5460S for thermosensitive genic male sterility.	RGN	9	56-57.	1992	TMS1	tms1 (TGMS), ms80, tms-1, tms(t)
595		Yano, M. and T. Omura	New genes for shruken endosperm mutants of rice.	Japan. J. Breed.	33(Suppl. 1)	122-123.	1983		
596		Yano, M., H. Satoh and T. Omura	Gene analysis on the endosperm mutants induced by MNU treatment in rice.	Japan. J. Breed.	30(Suppl. 1)	260-261.	1980		
597		Yano, M., Y. Isono, H. Satoh and T. Omura	Gene analysis of sugary and shrunken mutants of rice, Oryza sativa L.	Japan. J. Breed.	34(1)	43-49.	1984	SUG,SHR1	sug(su), su, sug1, su1, su-1,shr1, sh1, shr
598		Yano, M., K. Okuno, J. Kawakami, H. Satoh and T. Omura	High amylose mutants of rice, Oryza sativa L.	Theor. Appl. Genet.	69	253-257.	1985	AE1	ae1
599		Yano, M., K. Okuno, H. Satoh and T. Omura	Chromosomal location of genes conditioning low amylose content of endosperm starches in rice, Oryza sativa L.	Theor. Appl. Genet.	76	183-189.	1988	DU5,DU4,DU1	du5,du4,du1
600		Yano, M., A. Saito, A. Yoshimura, S. Kuhara, S. Yoshimura, O. Ikeda, N. Kishimoto, K. Saito, R. Ohsawa, K. Kawase, T. Nagamine, T. Ogawa, M. Nakagahra and N. Iwata	Chromosome identification of rice RFLP linkage groups.	Japan. J. Breed.	40(Suppl. 1)	468-469.	1990	EST3,LAX1,FGL,NL1	Est3,lax, lax(lx), lx, OsbHLH123, bHLH123, OsLAX1, BOS1, OsBOS1,fgl(fl), fl, fgl, OsFGL, OsPorB, PoPA, PORA, porA, OsPORA, PORB, OsPORB,nl1, OsGATA15, GATA15, OsNL1
601		Yano, M., E. Simosaka, A. Saito and M. Nakagahra	Linkage analysis on gene for scent in indica rice variety, Surjamkhi, using a restriction fragment length polymorphism markers.	Japan. J. Breed.	41(Suppl. 1)	338-339.	1991	SK2(T)(SCL, FGR)	sk2(t)(scl, fgr), fgr, scl, BAD2, BADH2, sk2, OsBADH2, Badh2, badh2, Os2AP, BADH-2, OsALDH10A8, ALDH10A8 
602		Yano, M., R. Zamorski, A. Saito and N. Shibuya	Linkage analysis of the gene controlling glucomannan content in endosperm cell wall of rice.	Japan. J. Breed.	41(Suppl. 2)	498-499.	1991	MAN	Man
603		Yano, M., R. Zamorski, A. Saito and N. Shibuya	A dominant gene controlling accumulation of glucomannan in the cell wall of rice endosperm.	RGN	10	107-108.	1993	MAN	Man
604		Yasui, H., S. Saiki and N. Iwata	A desynaptic gene ds3(t) located on chromosome 7 in rice.	RGN	10	80-83.	1993	DS3	ds3(t), ds3
605		Yen, S.T. and S.C. Hsieh	The inheritance of coloration and some other characters of induced dwarf-mutant. Genic analysis in rice, X.	J. Taiwan Agr. Res.	17(2)	1-8.	1968	D57	d57[d(x)], dwf38, d(x), d57
606		Yen, S.T., M.M. Lin and S.C. Hsieh	Linkage relations of another induced dwarfness gene d31. Genic analysis in rice, IX.	Bot. Bull. Acad. Sin.	9(1)	69-74.	1968	D31,NAL4	d31, dwf27,nal4(nal), nal4, nal, cul4
607		Yokoo, M.	Female sterility in a Indica-Japonica cross of rice.	Japan. J. Breed.	34(2)	219-227.	1984	FES1,FES2	fes1,fes2
608		Yokoo, M. and F. Kikuchi	Multiple allelism of locus controlling heading time of rice detected using the close linkage with blast-resistance.	Japan. J. Breed.	27(2)	123-130.	1977	SE1	Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, OsHd1,  Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21
609		Yokoo, M. and F. Kikuchi	Genetic analysis for heading time in rice by the aid of the linkage with blast resistance.	Japan. J. Breed.	28(1)	49-55.	1978	SE1	Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, OsHd1,  Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21
610		Yokoo, M. and F. Kikuchi	Monogenic control of basic vegetative phase and photoperiod-sensitive phase in rice.	Japan. J. Breed.	32(1)	1-8.	1982	SE1	Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, OsHd1,  Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21
611		Yokoo, M. and K. Okuno	Genetic analysis of earliness mutations induced in the rice cultivar Norin 8.	Japan. J. Breed.	43	1-11.	1993	SE5	Se5, OsHO1, OsHO-1, OsHY1, HO-1, HO1, OsSE5, YGL2, YGL2/HO1
612		Yoshimura, A., N. Iwata and T. Omura	Linkage analysis by reciprocal translocation method in rice plants (Oryza sativa L.). III. Marker genes located on chromosomes 2, 3, 4 and 7.	Japan. J. Breed.	32(4)	323-332.	1982	SPL6,D18,RI,FGL,RK2,LAX1,PGL,D1,SPL1,RL3,NL1,D10,NAL3	spl6,d18-h  (d18-I, d18h), dwf15, d25, d18, d18-k, d18-AD, d18-dy, OsGA3ox2, ga3ox2, OsGA3OX2, GA3OX2, OsGA3ox-2, GA3ox-2, GA3ox1,ri,fgl(fl), fl, fgl, OsFGL, OsPorB, PoPA, PORA, porA, OsPORA, PORB, OsPORB,rk2,lax, lax(lx), lx, OsbHLH123, bHLH123, OsLAX1, BOS1, OsBOS1,pgl,d1, GPA1, GA1, OsGA1, RGA1, dwf1, XA7, RGA, D1/RGA1, D89, TGW5, OsTGW5, SRG5, OsSRG5,Spl1, spl1(sl,bl2), sl, bl2, spl1,rl3(rl1), rl1, rl3, cul10,nl1, OsGATA15, GATA15, OsNL1,d10(d15,d16), d16, d15, dwf9, d10, OsCCD8b, OsCCD8, CCD8, OsD10,nal3(nal2), nal2, nal3, cul3, OsWOX3A, WOX3A, WOX3, OsWOX3, OsNS, OsNS1/OsNS2, OsPRS
613		Yoshimura, A., T.W. Mew, G.S. Khush and T. Omura	Trisomic analysis of a recessive gene xa-5 for resistance to bacterical blight of rice.	Japan. J. Breed.	33(Suppl. 1)	264-265.	1983	XA5	xa5, xa-5, Xa5, TFIIAy, OsTFIIAgamma5, TFIIAgamma5, OsTFIIAgamma5/Xa5
614		Yoshimura, A., T.W. Mew, G.S. Khush and T. Omura	Inheritances of resistance to bacterial blight in rice cultivar, Cas 209.	Phytopathology	73(10)	1409-1412.	1983	XA10	Xa10, Xa-10
615		Yoshimura, A., O. Ideta, T. Matsumoto, T. Tsunematsu and N. Iwata	Integration of conventional and RFLP linkage maps in rice. 1. On chromosomes 1, 2, 3 and 4.	Japan. J. Breed.	42(Suppl. 1)	168-169.	1992	FS2,D18,RL4,D11,SPL6,V6,BL1,TRI,SPL3,LG,CHL1,FC1,EG1	fs2,d18-h  (d18-I, d18h), dwf15, d25, d18, d18-k, d18-AD, d18-dy, OsGA3ox2, ga3ox2, OsGA3OX2, GA3OX2, OsGA3ox-2, GA3ox-2, GA3ox1,rl4(rl2), rl2, rl4, cul11,d11(d8), dwf10, d8, D11/CYP724B1, d11, CYP724B1, GNS4, OsD11, PMM1, OsPMM1, PMM1/D11, NBG4, OsCPB1, CPB1, CPB1/D11,spl6,v6,bl1,tri,spl3(bl4), spl3, bl4,lg,chl1, chl1(ch1), ch1,fc1, OsTB1, tb1, OsTB1/FC1, Os TB1, TB1, OsFC1, MP3, OsMP3,eg1, GY1, OsEG1, OsGY1
616		Yoshimura, A., O. Ideta, S. Takebayashi, T. Matsumoto, S. Yoshimura, T. Ogawa and N. Iwata	Integration of RFLP and conventional maps in rice. II. The location of gl-1 and xa-5.	Japan. J. Breed.	42(Suppl. 2)	124-125.	1992	XA5,NL1,GL1	xa5, xa-5, Xa5, TFIIAy, OsTFIIAgamma5, TFIIAgamma5, OsTFIIAgamma5/Xa5,nl1, OsGATA15, GATA15, OsNL1,gl1, NUDA/GL-1, NUDA/GL1, NUDA, GL-1, OsWOX3B, OsWOX2, OsWOX3, Os WOX3, WOX3B, WOX2, WOX3, LSY1, OsLSY1, DEP, OsDEP
617		Yoshimura, S., R. Nelson, A. Yoshimura, T.W. Mew and N. Iwata	RFLP mapping of the bacterical blight resistance genes Xa-3 and Xa-4.	RGN	9	136-138.	1992	XA3,XA4	Xa-3, Xa3 (Xa4b, Xa6, Xa9, Xa w), Xa3, Xaw, Xa6, Xa9, Xa4-b, XA26, Xa26(t), Xa26(t)*, Xa26, RKb, MRKb, MRKB, TRKb, Xa3/Xa26,Xa4, Xa4(Xa4a), Xa-4, Xa4-a, WAK, wak, xa4
618		Yoshimura, S., A. Yoshimura and N. Iwata	Tagging Xa-1, the bacterial blight resistance gene in rice, by using RAPD markers.	Japan. J. Breed.	42(Suppl. 2)	204-205.	1992	XA4,XA1	Xa4, Xa4(Xa4a), Xa-4, Xa4-a, WAK, wak, xa4,Xa1(Xe), Xe, Xa1, Xa-1
619		Yoshimura, S., A. Yoshimura, A. Saito, N. Kishimoto, M. Kawase, M. Yano, M. Nakagahra, T. Ogawa and N. Iwata	RFLP analysis of introgressed chromosomal segments in three near-isogenic lines of rice for bacterial blight resistance genes, Xa-1, Xa-3 and Xa-4.	Jpn. J. Genet.	67	29-37.	1992	XA4,XA3,XA1	Xa4, Xa4(Xa4a), Xa-4, Xa4-a, WAK, wak, xa4,Xa-3, Xa3 (Xa4b, Xa6, Xa9, Xa w), Xa3, Xaw, Xa6, Xa9, Xa4-b, XA26, Xa26(t), Xa26(t)*, Xa26, RKb, MRKb, MRKB, TRKb, Xa3/Xa26,Xa1(Xe), Xe, Xa1, Xa-1
620		Yoshimura, S., A. Yoshimura, R.J. Nelson, S.R. McCouch, T.W. Mew and N. Iwata	Mapping and combining of bacterial blight resistance genes in rice using molecular markers.	Japan. J. Breed.	43(Suppl. 1)	161	1993	XA10,XA4,XA3	Xa10, Xa-10,Xa4, Xa4(Xa4a), Xa-4, Xa4-a, WAK, wak, xa4,Xa-3, Xa3 (Xa4b, Xa6, Xa9, Xa w), Xa3, Xaw, Xa6, Xa9, Xa4-b, XA26, Xa26(t), Xa26(t)*, Xa26, RKb, MRKb, MRKB, TRKb, Xa3/Xa26
621		Yoshimura, S., N. Kurata, T. Sasaki and A. Yoshimura	Genetic analysis of bacterial blight resistance genes in rice by using molecular markers.	Recent Advances in Breeding	36	33-36.	1994	XA1,XA2,XA4,XA3	Xa1(Xe), Xe, Xa1, Xa-1,Xa2,Xa4, Xa4(Xa4a), Xa-4, Xa4-a, WAK, wak, xa4,Xa-3, Xa3 (Xa4b, Xa6, Xa9, Xa w), Xa3, Xaw, Xa6, Xa9, Xa4-b, XA26, Xa26(t), Xa26(t)*, Xa26, RKb, MRKb, MRKB, TRKb, Xa3/Xa26
622		Yoshimura, S., A. Yoshimura, R.J. Nelson, T.W. Mew and N. Iwata	Tagging Xa-1, the bacterical blight resistance gene in rice, by using RAPD markers.	Breeding Science	45	81-85.	1995	XA1	Xa1(Xe), Xe, Xa1, Xa-1
623		Yu, C.J. and T.T. Yao	Genetische studien beim Reis. II. Die Koppelung des Landhullspelzengens mit dem Photoperiodizitatsgen.	Bot. Bull. Acad. Sin.	9(1)	34-35.	1968	SE2	se2
624		Yu, G.X., D.P. Zhang and Y.F. Xie	Location of genes for resistance to Chinese strains of blight, Xanthomonas campestris pv. oryzae in IR28.	RGN	3	86-87.	1986	XA A*,XA H*	Xa a*, XAA, Xaa*, Xaa,Xa h*, XAH, Xah*, Xah
625		Yu, Z.H., D.J. Mackill, J.M. Bonman and S.D. Tanksley	Tagging genes for blast resistance in rice via linkage to RFLP markers.	Theor. Appl. Genet.	81(4)	471-476.	1991	PI1,PIZ,PITA	Pi1, Pi-1, Pi1-5C, Pi1-6C,Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2,Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30, Trx30
626		Yu, Z.H., T. Kinoshita, S. Sato and S.D. Tanksley	Morphological and RFLP markers are associated in rice.	RGN	9	116-118.	1992	D30,SD1,HG,RC,PR,RF1,LAX1,D27,D11,GL1	d30(d W), dW, dwf26, d30,sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2, OsPHQ1, OsPHq1, PHq1,Hg, Fg,Rc, OsbHLH017, OsbHLH17, SD7-1, qSD7-1/qPC7, OsGL3C, GL3C,Pr(Rp), Rp, Pr,Rf1 (Rf-1), rf-1, PPR791, PPR8-1, Rf-1, Rf1, Rf-1A, Rf5, Rf1a, RF5, Rf5(t)*(Rf(t)*), RF1A, PPR6, PLS31, OsPLS31,lax, lax(lx), lx, OsbHLH123, bHLH123, OsLAX1, BOS1, OsBOS1,d27(d t), dt, dwf23, d27, OsD27,d11(d8), dwf10, d8, D11/CYP724B1, d11, CYP724B1, GNS4, OsD11, PMM1, OsPMM1, PMM1/D11, NBG4, OsCPB1, CPB1, CPB1/D11,gl1, NUDA/GL-1, NUDA/GL1, NUDA, GL-1, OsWOX3B, OsWOX2, OsWOX3, Os WOX3, WOX3B, WOX2, WOX3, LSY1, OsLSY1, DEP, OsDEP
627		Yu, Z.H., G.S. Khush and S.D. Tanksley	Assignment of RFLP linkage groups to rice chromosomes using primary trisomics.	RGN	11	149-155.	1994		
628		Yunoki, T., A. Ezuka, Y. Sakurai, H. Shinoda and K. Toriyama	Studies on the varietal resistance to rice blast. 3. Testing methods for field resistance on young seedling grown in greenhouse.	Bull. Chugoku Agric. Exp. Stn.,  Ser.E	6	1-19.	1970	PIF	Pi f, PIF, Pif, RMg3, Pi-f
629		Yunoki, T., A. Ezuka, T. Morinaka, Y. Sakurai, H. Shinoda and K. Toriyama	Studies on the varietal resistance of rice blast. 4. Variation of field resistance due to fungus strains.	Bull. Chugoku Agric. Exp. Stn.,  Ser.E	6	21-41.	1970	PIF	Pi f, PIF, Pif, RMg3, Pi-f
630		Zhang, A.F., B.S. Shen, X.K. Dai, M.H. Mei, M.A. Saghai Marrof and Z.B. Li	An RFLP-based genetic analysis of photoperiod sensitive male sterility in rice.	RGN	10	94-97.	1993	PMS2,PMS1	pms2*(Pms2,pgms,ms2P), Pms2, ms2-P, pms2*, ms74,pms1*(Pms1,pgms,ms1P), pms1*, Pms1, ms1-P, pms1(t)*, pms1(t)
631		Zhang, G., E.R. Angeles, M.L.P. Abenes, G.S. Khush and N. Huang	Molecular mapping of a bacterial blight resistance gene on chromosome 8 in rice.	RGN	11	142-144.	1994	XA,XA,XA13	xa(t)*, Xa(t),xa(t)*,xa13, Xa13, Os8N3, Os-8N3, 8N3, OsSWEET11, SWEET11, OsSWEET11/Xa13, Xa13/Os8N3/SWEET11, Os8N3/Xa13, OsSWEET11/Os8N3, OsSWEET11a, SWEET11a
632		Zhang, G., Y. Lu and N. Huang	Molecular analysis of introgressed chromosomal segments in a set of near-isogenic lines of rice for fertility-restoring genes.	RGN	11	147-149.	1994	RF4,RF3	Rf4* (R1, Rf1), R1, Rf1, RfWA1, Rf4,Rf3* (R2, Rf2), Rf2, R2, Rf3, Rf-3
633		Zhu, L.H. and Z.Q. Xie	Progress in the exploitation of new dwarfing sources in rice breeding in China.	S. Iyama and G. Takeda (eds.), Proc. 6th Internat. Congress of SABRAO.	I	405-408.	1989	SDG	sdg*, sd11
634		Zhu, L.H. and G.X. Lai	Genetic analysis for a dominant dwarf line, KL908.	RGN	11	92-93.	1994		
635		Zhu, L.H., Y. Chen, Y.B. Xu, J.C. Xu, H.W. Cai and Z.Z. Ling	Construction of a molecular map of rice and gene mapping using a double haploid population of a cross between Indica and Japonica varieties.	RGN	10	132-135.	1993	MAL1,EST10,CAT1,AMP2,ACP2,MAL2,ACP1,PI11,PIZH,BHC	Mal1, Mal I, Mal-I, Mal-1,Est10,Cat1, Cat_1,Amp2(AlapA), Lap2, AlapA, Amp_2, Amp-2, Amp2,Acp2,Mal2,Acp1,Pi11(t)*(Pi zh), Pi11(t)*, Pizh, Pi-zh, Pi-zh*, Pi-zh(t), Pi-11(t), Pi-11, Pi11,Pizh,Ph=Bhc(Po), Bhc, Po, Ph, Bh3, PPO, Phr1, BH1
636		Zhu, Y.G. and J.H. Yu	Stability and inheritance of photoperiod-sensitive genic male sterility in rice.	S. Iyama and G. Takeda (eds.), Proc. 6th Internat. Congress of SABRAO.	II	745-748.	1989	PMS1	pms1*(Pms1,pgms,ms1P), pms1*, Pms1, ms1-P, pms1(t)*, pms1(t)
637		Zhuang, J.Y., C.D. Yang, H.R. Qian, C.Z. Zhao and K.L. Zheng	Somaclonal variation facilitating integration of classical and RFLP markers on chromosome 4 of rice.	RGN	11	114-116.	1994	PR,PRPB	Pr(Rp), Rp, Pr,Prpb(Pb), Pb, Prpb, Prp2
638		Zongtan, S. and H. Zuhua	Interaction between eui gene and WAMS cytoplasm of rice and improvement of panicle exertion of MS line.	S. Iyama and G. Takeda (eds.), Proc. 6th Internat. Congress of SABRAO.	II	753-756.	1989	EUI1	eui1, GA16,17ox, CYP714D1, EUI, CYP714D1/EUI, OsEUI, LG5, OsLG5
639		Huang, N., S. McCouch, T. Mew, A. Parco and E. Guiderdoni	Development of an RFLP map from a doubled haploid population in rice.	RGN	11	134-137.	1994		
640		Katiyar, S.K., Y. Tan, Y. Zhang, B. Huang, Y. Xu, L. Zhao, N. Huang, G.S. Khush and J. Bennett	Identification of RAPD marker linked to the gene controlling gall midge resistance against all biotypes in China.	RGN	11	128-131.	1994	GM6	Gm6(t), Gm6
641		Tsai, K.H.	A gene accelerating the heading of late lines with ef-1 alleles.	RGN	10	83-85.	1993	ACEF1	Ac ef1, Acef1
642	7894488	Kurata, N., Y. Nagamine, K. Yamamoto, Y. Harushima, N. Sue, J. Wu, B.A. Antonio, A. Shomura, T. Shimizu, S-Y. Lin, T. Inoue, A. Fukuda, T. Shimano, Y. Kuboki, T. Toyama, Y. Miyamoto, T. Kirihara, K. Hayasaka, A. Miyao, L. Monna, H.S. Zhong, Y. Tamura, Z-X. Wang, T. Momma, Y. Umehara, M. Yano, T. Sasaki and Y. Minobe	A 300 kilobase interval genetic map of rice including 883 expressed sequences.	Nat Genet	8	365-372.	1994	HSP2*,HSP4*,PKC2,GCW2,PKC1,GCW4,ALD3,ATP,ALD2,TRYP,CDC,SOD,ANT,ORYA,SALT	hsp2*, hsp2,hsp4*, hsp4,pkc2*, pkc2,gcw2*, gcw2,pkc1*, pkc1,gcw4*,Ald3*(ald1), Ald3, ald1,ATP*(atp1), ATPX, atp1,Ald2*(ald2), Ald2, ald2,TRYP*(tin), TRYP*, tin, Tryp,cdc*, cdc,sod*, sod,ant, ricANC1, ANC1,ocp*, ocp, OsOCP, OsORYA,salT*(sal1), SalT1*, sal1, Sal1, SALT, ML, SalT, OsSalT, OsJRL, JRL, Osl43, OsL43, OsMBL1, MBL1, OsJRL01, JRL01, OsJRL1, JRL1
643		Shinjyo, C. and S. Sato	Chromosomal location of a fertility restoring gene Rf-2.	RGN	11	93-95.	1994	RF2	Rf2 (Rfx), Rfx, Rf2
644		Shinjyo, C. and S. Sato	Chromosomal location of a fertility restoration gene Rf-2 in rice, Oryza sativa L.	Breeding Science	44(Suppl. 2)	182	1994	RF2	Rf2 (Rfx), Rfx, Rf2
645		Nakagahra, M.	Phylogenetic differentiation of rice plant from the stand point of gene distribution.	Recent Advances in Breeding	17	35-44.	1976	GA2,GA4,GA1,GA3	ga2,ga4(gaA), gaA, ga4,ga1,ga3
646		Suge, H.	Physiological genetics of internodal elongation under submergence in floating rice.	Jpn. J. Genet.	62(1)	69-80.	1987	EL	El*, El
647		S. N. Ahn, C. N. Bollich and S. D. Tanksley	RFLP tagging of a gene for aroma in rice	Theor. Appl. Genet.	84	825-828.	1992	SK2(T)(SCL, FGR)	sk2(t)(scl, fgr), fgr, scl, BAD2, BADH2, sk2, OsBADH2, Badh2, badh2, Os2AP, BADH-2, OsALDH10A8, ALDH10A8 
648	7896104	Causse, M.A., T.M. Fulton, Y.G. Cho, S.N. Ahn, J. Chunwongse, K. Wu, J. Xiao, Z. Yu, P.C. Ronald, S.E. Harrington, G. Second, S.R. McCouch and S.D. Tanksley	Saturated molecular map of the rice genome based on an interspecific backcross population.	Genetics	138	1251-1274.	1994	XA21,IPI3,PGI2,PI157,SD1,PI6,WX1,LAX1,PI3,TRYP,ADH1,EST,PITA,D5,SALT,GLH,S5,TSV1,AMY3E,PR,AMY3D,XA2,SK2(T)(SCL, FGR),ATP,EST2,PI5-2,CL,AMY1C,WBPH1,GL1,TELSM1,CHT1,CYC1,AMY1A,R45S1,ATUB,TELSA1,DN1,EF,TELSM3,PGD1,LA,Z2,HBV,LEC,SDH1,POX2,ACP2,ACP1,ACP4,BPH10,IPI,PI,R5S1,AMY3A,XA10,PI30,PI11,RCH10,SE3,MAL1,ACS3,AMY2A,XA5,AMY1B,GM2,CALA,PI10,CALB,D27,ACS1,LRT2,PI9,XA1,XA4,ACT1,BHC,PHYA,PIZ,PIZH,_,AMY3B,AMY3C	Xa21*, Xa21, OsXA21,IPi3(t)*, IPi3, Rmg57,Pgi2(Pgib), Pgib, Pgi_2, Pgi2, GPI-B, PGI-B, PHI-B, Pgi-b, PGI-b, SIS, OsSIS, OsPGI2,Pi157*, Pi157(t)*, Pi-157, Pi157,sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2, OsPHQ1, OsPHq1, PHq1,Pi6(t)*, Pi6, Pi-6(t), pi6(t),wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx,lax, lax(lx), lx, OsbHLH123, bHLH123, OsLAX1, BOS1, OsBOS1,Pi3, Pi5, Pi-3(t), Pi-3, Pi3(t), Pi5(t), Pi5-1, Pii,  RMg22, RMg21,TRYP*(tin), TRYP*, tin, Tryp,Adh1, Adh1/2, adh1/adh2, OsADH1,Est I2*, EstI2*, Est15, ESTL2,Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30, Trx30,d5, dwf5,salT*(sal1), SalT1*, sal1, Sal1, SALT, ML, SalT, OsSalT, OsJRL, JRL, Osl43, OsL43, OsMBL1, MBL1, OsJRL01, JRL01, OsJRL1, JRL1,Glh(t)*, Glh, Glh14,S5-3, S5-4,tsv1(RTSV), RTSV, tsv1,Amy3D/E*(RAmy3D/E), alpha Amy8, alphaAmy8, AmyII-3, AMY1.4, Amy3E, Amy3D/E*, RAmy3D/E, Amy9, RAmy3E, alphaAmy8-C, AMY3E/AMY1.4, OsAmy3E, OsRamy3E,Pr(Rp), Rp, Pr,Amy3D/E*(RAmy3D/E), alpha Amy3, AmyII-4, AMY1.3, Amy3D, Amy3D/E*, RAmy3D/E, Amy3D_E, Amy8, aAmy3, RAmy3D, OsAmy3D, alphaAmy3, OsRamy3D,Xa2,sk2(t)(scl, fgr), fgr, scl, BAD2, BADH2, sk2, OsBADH2, Badh2, badh2, Os2AP, BADH-2, OsALDH10A8, ALDH10A8 ,ATP*(atp1), ATPX, atp1,Est2, Est_2,Pi3, Pi5, Pi-3(t), Pi-3, Pi3(t), Pi5(t), Pi5-2, Pii,  RMg22, RMg21,Cl,Amy1A/C*(RAmy1A/C), alpha Amy10, Amy1C, RAmy1A/C, Amy1A/C*, Amy3, RAmy1C, OsAmy1C, alphaAmy10-C,Wph1(Wbph), Wbph1, Wph1,gl1, NUDA/GL-1, NUDA/GL1, NUDA, GL-1, OsWOX3B, OsWOX2, OsWOX3, Os WOX3, WOX3B, WOX2, WOX3, LSY1, OsLSY1, DEP, OsDEP,Telsm1*, Telsm1,Cht1*(Chi1), Ch16, Cht1, CHT-1, CH16, RC24, OsChia1a, OsChia1, Chi1, Cht1*, Chi-1, Cht-1, Cht1, RCC1, OsCht-1, PR3, OsPR3,cyc1*, cyc1,Amy1A/C*(RAmy1A/C), alpha Amy7, AMY1.1, Amy1A, RAmy1A/C, Amy1A/C*, Amy1, Amy1A_C, OsAmy1A, alphaAmy7-C, RAmy1A, AmyI-1, OsAmyI-1, OsRamy1A,R45s1*(rDNA1), rDNA1, r45s, R45s1,atub*, atub,Telsa1*, Telsa1,Dn1,Ef(t)*, ef(t)*, Ef, ef,Telsm3*, Telsm3,Pgd1, 6Pgd1,la,z2,Hbv,Lec*, Lec,Sdh1, Skd,Pox2,Acp2,Acp1,Acp4,Bph10(t)*, Bph10,IPi(t)*, IPi. Rmg56,Pi(t)*, Pi(t),R5s1*, r5s, R5s1,Amy3A/B/C*(RAmy3A/B/C), Amy3A, RAmy3A/B/C, Amy3A/B/C*, AMY1.2, Amy5, RAmy3A, OsEnS-129,Xa10, Xa-10,Pi-30(t), Pi30(t),Pi11(t)*(Pi zh), Pi11(t)*, Pizh, Pi-zh, Pi-zh*, Pi-zh(t), Pi-11(t), Pi-11, Pi11,RCH10*, Cht13, Cht12, Rcht2,Se3(t), Se3,Mal1, Mal I, Mal-I, Mal-1,ACC3*, ACC3, OsACS3, OS-ACS3, OsACC3,Amy2A*(RAmy2A), AMY1.5, AMYC2, RAmy2A, Amy4, Amy2A,xa5, xa-5, Xa5, TFIIAy, OsTFIIAgamma5, TFIIAgamma5, OsTFIIAgamma5/Xa5,Amy1B*(RAmy1B), AMYC, RAmy1B, Amy2, Amy1B, Osamy-c, OSamy-c, OSamy--c ,Gm2, Gm-2, GM-2,CALa*, Cal1, CaM-2, CAM2, CAM, OsCaM2, OsCam2, OsCaM1, CaM1,Pi10(t)*, Pi10, Pi-10t, Pi-10, Pi-10(t),CALb*, Cal2, CAM1-2, CAM, CaM-1, OsCam1-2, OsCaM1-2,d27(d t), dt, dwf23, d27, OsD27,ACC1*, OsACS1, Os-ACS1, ACC1, OsACC1,CYC2, cyc2*, cyc2, OsCYP2, Cyp2, OsCYP19-2, CYP19-2, OsCYP-2, OsCyp2-P, OsCyp2, OsCYP19-1, LRT2/OsCYP2, lrt2*, lrt2, Ppcti ,Pi9(t), Pi9(t)*, Pi9, Pi-9(t),Xa1(Xe), Xe, Xa1, Xa-1,Xa4, Xa4(Xa4a), Xa-4, Xa4-a, WAK, wak, xa4,act1, AC1, RAC1, RAc1, ACT11, OsACT1,Ph=Bhc(Po), Bhc, Po, Ph, Bh3, PPO, Phr1, BH1,phyA, PHYA* (phyA), PHYA*, Phya, PHY18, phy 18, OsPHYA ,Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2,Pizh,ZB8,Amy3A/B/C*(RAmy3A/B/C), alpha Amy6, AmyII-5, AMY1.6, Amy1.6, Amy3B, BRAmy3A/B/C, Amy3A/B/C*, Amy6, RAmy3B, alphaAmy6-C, OsRamy3B, OsAmy3C,Amy3A/B/C*(RAmy3A/B/C), AmyII-6, AMY1.7, Amy3C, RAmy3A/B/C, Amy3A/B/C*, Amy7, AMY3B, RAmy3C, OsAmy3B
649		Hirabayashi, H. and T. Ogawa	RFLP mapping of Bph-1 (Brown planthopper resistance gene) in rice.	Breeding Science	45	369-371.	1995	BPH1	Bph1
651		Jena, K.K., G.S. Khush and G. Kochert	RELP analysis of rice (Oryza sativa L.) introgression lines.	Theor. Appl. Genet.	84	608-616.	1992	BPH10	Bph10(t)*, Bph10
652	2535506	Kay, S.A., B. Keith, K. Shinozaki, M.L. Chye and N.H. Chua	The rice phytochrome gene Structure, autoregulated expression and binding of  GT-1 to a conserved site in the 5' upstream region.	Plant Cell	1	351-360.	1989	PHYA	phyA, PHYA* (phyA), PHYA*, Phya, PHY18, phy 18, OsPHYA 
653		Lin, S.Y., H. Ikehashi, S. Yanagihara and K. Kawashima	Segregation distortion via male gemetes in hybrids between Indica and Japonica or wide-compatibility varieties of rice (Oryza sativa L.).	Theor. Appl. Genet.	84	812-818.	1992		
654		Sano, Y.	Pollen-killers in rice.	Breeding Science	44(Suppl. 1)	298	1994	S12,S14,S13	S12(t),S14(t),CSB, OsCHR745, CHR745, OlCHR
655	8102907	Wu, K.S. and S.D. Tanksley	Genetic and physical mapping of telomeres and microsatellites of rice.	Plant Mol. Biol.	22	861-872.	1993	TELSM1,TELSA1,TELSM3	Telsm1*, Telsm1,Telsa1*, Telsa1,Telsm3*, Telsm3
656	2034221	Xhu,Q. C.J.Lamb	Isolation and characterization of a rice gene encoding a basic chitinase.	Mol. Gen. Genet.	226	289-296	1991	RCH10	RCH10*, Cht13, Cht12, Rcht2
657		Yanagihara, S., H. Ikehashi, H. Araki and K. Maruyama	Difference in recombination frequency between chromogen (C) and waxy (wx) genes in Japonica and Indica rice (Oryza sativa L.) by using Japonica lines with a wide compatibility gene (S-5n).	Japan. J. Breed.	42	15-21.	1992	S5	S5-3, S5-4
658		Yu, Z.H., S.R. McCouch, T. Kinoshita, S. Sato and S.D. Tanksley	Association of morphological and RFLP markers in rice (Oryza sativa L. ).	Genome	38	566-574.	1995	D30,GL1,D5,SD1,HG,D27,PR,D11,CL,RF1,DN1,PGL,LA,RC,LAX1,D10	d30(d W), dW, dwf26, d30,gl1, NUDA/GL-1, NUDA/GL1, NUDA, GL-1, OsWOX3B, OsWOX2, OsWOX3, Os WOX3, WOX3B, WOX2, WOX3, LSY1, OsLSY1, DEP, OsDEP,d5, dwf5,sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2, OsPHQ1, OsPHq1, PHq1,Hg, Fg,d27(d t), dt, dwf23, d27, OsD27,Pr(Rp), Rp, Pr,d11(d8), dwf10, d8, D11/CYP724B1, d11, CYP724B1, GNS4, OsD11, PMM1, OsPMM1, PMM1/D11, NBG4, OsCPB1, CPB1, CPB1/D11,Cl,Rf1 (Rf-1), rf-1, PPR791, PPR8-1, Rf-1, Rf1, Rf-1A, Rf5, Rf1a, RF5, Rf5(t)*(Rf(t)*), RF1A, PPR6, PLS31, OsPLS31,Dn1,pgl,la,Rc, OsbHLH017, OsbHLH17, SD7-1, qSD7-1/qPC7, OsGL3C, GL3C,lax, lax(lx), lx, OsbHLH123, bHLH123, OsLAX1, BOS1, OsBOS1,d10(d15,d16), d16, d15, dwf9, d10, OsCCD8b, OsCCD8, CCD8, OsD10
659		Zheng, K., P. Shen, H. Quian and J. Wang	Tagging genes for wide compatibility in rice via linkage to RFLP markers.	Chinese J. Rice Sci.	6	145-150.	1992	WC	Wc*(S5-n,S-n), Wc1
660		Chandraratna, M.F.	Genetics and Breeding of Rice.	Longmans, London		1-389.	1964		
661		Chang, T.	Present Knowledge of Rice Genetics and Cytogenetics.	Technical Bulletin, International Rice Research Institute, Los Banos, Philippines.		1-96.	1964		
662		Chao, L.F.	Linkage studies in rice.	Genetics	13	133-169.	1928		
663		Ikeno, S.	Eine Monographie uber die Erblichkeitsforschungen bei der Reispflanze.	Bibliographia Genet.	III	245-312.	1927		
664		Kadam, G.S. and K. Ramiah	Symbolization of genes in rice.	Indian J. Genet. & Plant Breed.	3	7-27.	1943		
665		Khush, G.S.	Disease and insect resistance in rice.	Adv. Agron.	29	265-361.	1977		
666		Khush, G.S. and T. Kinoshita	Rice karyotype, marker genes and linkage groups.	In Rice Biotechnology. G.S. Khush and G.H. Toenniessen eds. C.A.B. International, Wallingford, U.K. and IRRI, Manila, Philippines.		83-108.	1991		
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668		Matsuura, H.	A Bibliographical Monograph on Plant Genetics (Genic Analysis), 1900-1929.	Hokkaido Imp. Univ., Sapporo	2nd ed.	1-787	1933		
669		Morinaga, T. and E. Fukushima	Heritable characters in rice.1. Abnormal mutant characters and their mode of inheritance.	Sci. Bull. Fac. Agr. Kyushu Univ.	10	301-339.	1943		
670		Nagai, I.	Japonica rice:  its breeding and culture.	Yokendo, Tokyo.		1-843.	1959		
671		Nagao, S.	On the gene symbolization in rice.	Agric. & Hort.	10(6)	1391-1394.	1935		
672		Nagao, S.	Genetics and Breeding of Rice. (̈Bƈj	Yokendo, Tokyo.		1-225.	1936		
673		Nayar, N.M.	Origin and cytogenetics of rice.	Adv. Genet.	17	153-292.	1973		
674		Ramiah, K. and M.B.V.N. Rao	Rice Breeding and Genetics.	Scientific monograph No.19, Indian Council of Agricultural Research, New Delhi.		1-360.	1953		
675		Takahashi, N.	An example of linkage relation in rice (Preliminary report).	Jpn. J. Genet.	2	23-30.	1923		
676		U.S.D.A.Agr.Res.Serv.	Rice gene symbolization and linkage groups	Crops Res. ARS	34-28	1-56	1963		
677		Yamaguchi, Y.	Etudes d'heredite sur la couleur des glumes chez le riz.	Bot. Mag. Tokyo.	35	106-112.	1921		
678		Yamaguchi, Y.	Kreuzungsuntersuchungen an Reispflanzen. I. Genetische Analyse der Granne, der Spelzenfarbe und der Endospermbeschaffenheit bei einigen Sorten des Reises.	Ber. Ohara. Inst. f. Landw. Forsch.	3	1-126.	1926		
679		Yamaguchi, Y.	Kreuzungsuntersuchungen an Reispflanzen. II. Ueber die zweite (S-M-) Koppelungsgruppe mit besonderer Berucksichtigung ihrer korre'ativen Beziehung zur Blutezeit, Vorlaufige Mitteilung.	Ber. Ohara. Inst. f. Landw. Forsch.	3	319-330.	1927		
680		Yamaguchi, Y.	Neuere genetische Untersuchungen uber die Reispflanze.	Zeitschrift fur Induktive Abstammungs- und Vererbungslehre (Mol. Genet. Gen. )	45	105-122.	1927		
681		Pai, C.	A modifier gene for peroxidase isozyme in rice.	RGN	2	63-64.	1985	MPOX1	M Pox1(M px1), MPx1, MPox1, Pox7
682		Ishikawa, R., T. Kinoshita and H. Morishima	A preliminary report on trisomic analysis of genes for isozymes	RGN	3	54-55.	1986	AMP2,PGD1,SDH1	Amp2(AlapA), Lap2, AlapA, Amp_2, Amp-2, Amp2,Pgd1, 6Pgd1,Sdh1, Skd
684		Kitano, H.	Inheritance and morphological characteristics of a panicle-degenerating mutant in rice.	Japan. J. Breed.	37(Suppl. 1)	202-203.	1987		
685		Tsai, K.H. and H.I. Oka	Genetic studies of yielding capacity and adaptability in crop plants. 4. Effects on an earliness gene, m-b in the genetic background of a rice variety, Taichung 65.	Bot. Bull. Acad. Sin.	11(1)	16-26.	1970	E1	E1 (=m Ef1+), mEf1+, Hd4(t), m Ef1-a, m Ef1-b
686		Aida, T., T. Takamure and T. Kinoshita	Inheritance of a physiological mutant showing retarded panicle development.	RGN	12	202-203.	1995	RP	rp(t)(rpt), rtp, rp
687		Aoki, T., N. Kameya, T. Li and I. Nakamura	cDNA clones encoding polysaccharide-modifying enzymes in elongating internodes of rice ao mutant.	Breeding Science	46(Suppl. 2)	29	1996	AO	ao
688		Ashikari, M., A. Yoshimura and N. Iwata	Fine mapping of d-1 dwarf gene in rice.	Breeding Science	46(Suppl. 2)	79	1996	D1	d1, GPA1, GA1, OsGA1, RGA1, dwf1, XA7, RGA, D1/RGA1, D89, TGW5, OsTGW5, SRG5, OsSRG5
689		Bligh, H.F.J., R.I. Till and C.A. Jones	A microsatellite sequence closely linked to the Waxy gene of Oryza sativa.	Euphytica	86	83-85.	1995	WX1	wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx
690		Das, T.	Genetic relation between dormancy and aroma in rice.	RGN	12	209-211.	1995	SDRA,SK2(T)(SCL, FGR)	Sdra (Sd), Sdra, Sdua, Sdr6,sk2(t)(scl, fgr), fgr, scl, BAD2, BADH2, sk2, OsBADH2, Badh2, badh2, Os2AP, BADH-2, OsALDH10A8, ALDH10A8 
691		Dung, L.-V. and Y. Sano	Comparative genetics of photoperiod sensitivity genes located on chromosome 6 in rice.	Breeding Science	46(Suppl. 2)	239	1996	SEPAT,SE1	se-pat(t), sepat(t)*(se), sepat(t)*,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, OsHd1,  Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21
692		Eiguchi, M. and Y. Sano	Evolutionary significance of chromosome 7 in an annual type of wild rice.	RGN	12	187-189.	1995	SSV,LH,RC,G1	Ssv*, Dwf44, Ssv,Lh(t)*, lh(t),Rc, OsbHLH017, OsbHLH17, SD7-1, qSD7-1/qPC7, OsGL3C, GL3C,g1 (lng), lng, g1, ELE, Os ELE, OsG1, G1/ELE, LSL2, OsLSL2
693		Fujiwara, M., C. Nakamura, K. Murata, N. Mori and C. Kaneda	Linkage analysis of brown-planthoper resistance gene, Bph9, in Oryza sativa ssp.indica cv. Pokkali.	Breeding Science	46(Suppl. 2)	72	1996	BPH9	Bph9, BPH9/26, Bph26(t), BPH26, Bph18(t), BPH18
694		Fukuoka, S. and K. Okuno	Chromosomal location of one of complementary recessive genes controlling hybrid breakdown in rice.	RGN	12	191-192.	1995	HWD2,HWD1	hwd2,hwd1
695		Fukuta, Y., M. Yano and A. Kobayashi	Genetic analysis of shattering-resistant mutant lines induced from an indica rice (Oryza sativa L.) variety,Nan-jing 11.	Breeding Science	44	325-331.	1994	SH4	sh4, sh4(t)*(sh3), sh3, sh4
696		Fukuta, Y., K. Tamura, M. Hirae, K. Fukui and S. Oya	Genetic analysis of the green rice leafhopper (Nephotettix cincticeps Uhler) resistance.II. Localization of the chromosomal regions resistant to green rice leafhopper in Norin PL6.	Breeding Science	46(Suppl. 1)	68	1996	GRHA,GRHB	Grha(t)*, Grha, Grh2,Grhb(t)*, Grhb, Grh4
697		Gao, H.-P., X.-H. Lin, G.-X. Yu, D.-P. Zhang and Y.-F. Xie	Inheritance of resistance to bacterial blight of four Yunnan rice varieties.	RGN	12	233-234.	1995	XA,XA	xa(t)*,xa(t)*, Xa(t)
698		Hayasaka, H., M. Takamatsu, Y. Kuboki, M. Yano, K. Matsunaga and T. Sasaki	Mapping genes conferring rice blast resistance in rice variety Kasalath using RFLP markers. Linkage analysis of the resistance gene on chromosome 6.	Breeding Science	45(Suppl. 2)	168	1995		
699		Hayasaka, H., A. Miyao, M. Yano, K. Matsunaga and T. Sasaki	RFLP mapping of a rice blast resistance gene Pi-k.	Breeding Science	46(Suppl. 2)	68	1996	PIK	Pik, RMg8, Pi-k, Pik-2, Pik-1, Pik1, Pik2, Pik-H4, Pikp-1, Pikh-1, Pik1-H4, Pikh-2, Pik2-H4
700		Hayashi, N., I. Ando and H. Naito	Gene analysis of a new blast resistance in the paddy rice variety, Aichi Asahi.	Breeding Science	46(Suppl. 2)	168	1996	PI14	Pi14(t), Pi14(t)*, Pi14
701		Hirabayashi, H. and T. Ogawa	Linkage analysis of brown planthopper resistance gene Bph-1 in rice by RFLP analysis.	Breeding Science	46:(Suppl. 1)	69	1996	BPH1	Bph1
702		Hirano, H.-Y., M. Eiguchi, M, Matsumoto and Y. Sano	Analysis of expression of the rice Wx gene by transient assay system -- Identification of the sequence element responsible for the difference in the expression level of Wxa and Wxb.	Breeding Science	46(Suppl. 1)	50	1996	WX1	wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx
703		Hittalmani, S., M.R. Foolad, T. Mew, R.L. Rodriguez and N. Huang	Development of a PCR-based marker to identify rice blast resistance gene, Pi-2(t), in a segregating population.	Theor. Appl. Genet.	91	9-14.	1995	PIZ	Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2
704		Hong, D. and M. Ichii	Genetic analysis of short root in rice (Oryza sativa L.).	Chinese J. Rice Sci.	8	200-204.	1994	SRT1	srt1*, srt1
705		Hong, S.K., T, Aoki, H. Kitano, H. Satoh and Y. Nagato	Phenotypic diversity of 188 rice embryo mutants.	Dev Genet.	16	298-310.	1995	SHO1,AGR1,GE1,APD1,CLE1,EML1,EML1,GLE2,GLE3,ORL1,RAL1,SPO1,VEP1,VEP2,VEP3,SHL1,SHL3,GLE1,RE3,RE1,RE2,SHL2,SHL4,SHO2	sho1, DCL4, OsDCL4, Os DCL4, Dcl4 ,agr1*, agr1,ge1, ge, CYP78A13, OsCYP78A13, GE, BG2, GES, OsGE/CYP78B5, CYP78B5, OsCYP78B5,apd1, apd1*,cle*, cle1,eml1,eml1*, eml1,gle2*, gle2,gle3*, gle3,orl1,ral1*, ral1,spo1*, shp1, spt1,vep1*, vep1,vep2*, vep2,vep3*, vep3,shl1, sh1,shl3, sh3,gle1*. gle1,re3,re1,re2,shl2, SHL2, sh2, OsRDR6, RDR6,shl4, sh4, OsAGO7, SHO2, AGO7, SHL4/SHO2,sho2
706		Hong, S.K., T. Aoki, H. Kitano, H. Satoh and Y. Nagato	Temperature-sensitive mutation, embryoless 1, affects both embryo and endosperm development in rice.	Plant Sci.	108(2)	165-172.	1995	GE1,EML1,EML1	ge1, ge, CYP78A13, OsCYP78A13, GE, BG2, GES, OsGE/CYP78B5, CYP78B5, OsCYP78B5,eml1,eml1*, eml1
707		Hong, S.K., H. Kitano, H. Satoh and Y. Nagato	Mutations affecting embryo size in rice.	RGN	12	196-199.	1995	CLE1,RE1,SPO1,RE3,RE2	cle*, cle1,re1,spo1*, shp1, spt1,re3,re2
708	8681786	Hong, S.K., H. Kitano, H. Satoh and Y. Nagato	How is embryo size genetically regulated in rice?	Development	122	2051-2058.	1996	GE1,CLE1,ENL1,SPO1,ENL1,RE2,RE3,GLE1,RE1	ge1, ge, CYP78A13, OsCYP78A13, GE, BG2, GES, OsGE/CYP78B5, CYP78B5, OsCYP78B5,cle*, cle1,enl1*,spo1*, shp1, spt1,enl1,re2,re3,gle1*. gle1,re1
709		Ichitani, K., H. Nishida, Y. Nishida, Y. Okumoto and T. Tanisaka	Complementary effect of heading-time genes, Se-1 and ef-1, on basic vegetative growth in rice.	Breeding Science	45(Suppl. 2)	180	1995	EF1	Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 
710		Ichitani, K., Y. Okumoto and T. Tanisaka	The origin of a photoperiod-sensitivity gene, Se-1n, distributed among rice varieties grown in Hokkaido.	Breeding Science	46(Suppl. 1)	86	1996	SE1	Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, OsHd1,  Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21
711		Ichitani, K., Y. Nishida, Y. Okumoto and T. Tanisaka	Gene analysis of rice varieties grown in Taiwan with special reference to Se-1 and Ef-1 loci.	Breeding Science	46(Suppl. 2)	66	1996	EF1,SE1	Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, OsHd1,  Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21
712		Imbe, T., H. Hashim, M. Iwasaki and T. Omura	Resistance in some Japonica rice cultivars to rice tungro spherical virus.	Japan. J. Breed.	43	549-556.	1993	TSV1	tsv1(RTSV), RTSV, tsv1
713		Inoue, H., Y. Okumoto and T. Tanisaka	Early heading-time gene of the Se-1 locus detected in a rice variety, Taichung 65.	Breeding Science	46(Suppl. 2)	65	1996	SE1	Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, OsHd1,  Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21
714		Inukai, T., R.S. Zeigler, S. Sarkarung, M. Bronson, L.V. Dung, T. Kinoshita and R.J. Nelson	Development of pre-isogenic lines for rice blast-resistance by marker-aided selection from a recombinant inbred population.	Theor. Appl. Genet.	93	560-567.	1996	PI12,PI5-2,PI7,PI3,PIZ5,PITA	Pi12(t), Pi12(t)*, Pi12, Pi-12(t) ,Pi3, Pi5, Pi-3(t), Pi-3, Pi3(t), Pi5(t), Pi5-2, Pii,  RMg22, RMg21,Pi7, Pi-7(t), Pi7(t),Pi3, Pi5, Pi-3(t), Pi-3, Pi3(t), Pi5(t), Pi5-1, Pii,  RMg22, RMg21,Piz-5, Pi-z5, Piz5, Pi-2(t), Pi-2, Pi2,Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30, Trx30
715		Isshiki, M., M. Nakajima, T. Izawa, H. Satoh and K. Shimamoto	Regulation of waxy gene expression in rice 2.dull regulatory genes for Wx gene expression.	Breeding Science	45(Suppl. 2)	41	1995	DU5,DU4,DU3,DU2,DU1	du5,du4,du3, OsCBP20, OsCBP20/du3, CBP20,du2,du1
716		Iwamoto, M., Y. Kuboki, L. Monna, H. Hayasaka, M. Yano, K. Matsunaga and T. Sasaki	Fine scale linkage mapping of a blast resistance gene Pi-b using pooled-sampling method.	Breeding Science	46(Suppl. 1)	91	1996	PIB	Pi b(Pi s), Pis, Pib, Pi-s, Pi-hy
717		Kaji, R. and T. Ogawa	RFLP mapping of a blast resistance gene, Pi-km, in rice.	Breeding Science	46(Suppl. 1)	70	1996	PIK,PIKM	Pik, RMg8, Pi-k, Pik-2, Pik-1, Pik1, Pik2, Pik-H4, Pikp-1, Pikh-1, Pik1-H4, Pikh-2, Pik2-H4,Pik-m, Pi-m, Pi-km, Pikm, Pi m, Pikm1-TS, Pikm2-TS, Pi-km1, Pi-km2
718		Kaji, R., T. Ogawa and M. Nishimura	Determination of chromosomal regions of a blast resistance gene, Pi-t, in rice.	Breeding Science	46(Suppl. 2)	69	1996	PIT	Pit, Pit(K59), Pit(Npb), Pi-t, PitNpb, PitK59, Pit1, OsPit1
719		Katayose, Y., Y. Kuboki, N. Kurata, M. Yano and T. Sasaki	Physical mapping of region containing a photoperiod sensitivity gene, Hd-1(Se-1), based on a fine scale linkage map.	Breeding Science	46(Suppl. 2)	53	1996	SE1	Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, OsHd1,  Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21
720		Ketipearachchi, Y., C. Nakamura, C. Kaneda, N. Mori and S.L. Amarasiri	Virulence acquisition of brown planthopper (BPH), Nilaparvata lugens Stal, through continuous culturing on rice cultivars with BPH resistance genes.	Breeding Science	46(Suppl. 2)	173	1996	BPH8,BPH9	bph8,Bph9, BPH9/26, Bph26(t), BPH26, Bph18(t), BPH18
721		Kitano, H., Y. Tamura, H. Satoh and Y. Nagato	Hierarchical regulation of organ differentiation during embryogenesis in rice.	Plant J.	3(4)	607-610.	1993	APD1,SHL2,CLE1,GLE2,SPO1,SHL1,SHP1,GLE1,RE1	apd1, apd1*,shl2, SHL2, sh2, OsRDR6, RDR6,cle*, cle1,gle2*, gle2,spo1*, shp1, spt1,shl1, sh1,shp1,gle1*. gle1,re1
722		Kobayashi, N., R. Ikeda and E.A. Vaughan	Resistance to rice tungro viruses in wild species of rice (Oryza spp.).	Japan. J. Breed.	43	247-255.	1993	TSV1	tsv1(RTSV), RTSV, tsv1
723		Koh, H.-J., M.-H. Heu and S.R. McCouch	Molecular mapping of the ges gene controlling the super-giant embryo character in rice (Oryza sativa L.).	Theor. Appl. Genet.	93	257-261.	1996		
724		Kubo, A., K. Harada, T. Shimamune, T. Matsuda, H. Sato and Y. Nakamura	Influence of sugary-1 mutations on key enzymes of starch biosynthesis and polyglucan structure in developing endosperms of rice.	Breeding Science	46(Suppl. 2)	202	1996	SUG	sug(su), su, sug1, su1, su-1
725		Kumamaru, T. and H. Satoh	Linkage analysis of genes, ge (giant embryo) and esp-1 (endosperm storage protein-1) on chromosome 7.	RGN	12	208-209.	1995	ESP1,RFS	esp1(rsp1), rsp1, esp1, OsESP1, ESP1/eRF1, eRF1, OseRF1,rfs, cul7, OsRFS, OsCHR729, CHR729, CHR4, OsCHR4, CRL6, OsCRL, OsCHR4/CHR729, PKR1, OsPHD32, PHD32
726		Liang, Z.-W. and M. Ichii	Genetic analysis of a short-root mutant LM 10 induced from rice (Oryza sativa L.) cultivar IR8.	Breeding Science	46	373-377.	1996	SRT2	srt2*, srt2
727		Liang, Z.-W. and M. Ichii	Inheritance of a short-root mutant LMN 35 in rice (Oryza sativa L.).	Breeding Science	46(Suppl. 2)	277	1996	SRT3,SRT2	srt3*, srt3,srt2*, srt2
728		Lin, X.-H., D.-P. Zhang, Y.-F. Xie, C.-F. Zhang and H.-P. Gao	Mapping a new gene for resistance to bacterial blight based on RFLP markers.	RGN	12	234-236.	1995	XA,XA	xa(t)*, Xa(t),xa(t)*
729		Maeda, H., H. Mori, J. Kuroda, T. Ishii, I. Takamure, T. Kinoshita and O. Kamijima	Molecular mapping of semidwarfing gene, sd-1, using RAPD and RFLP markers.	Breeding Science	46(Suppl. 1)	66	1996	SD1	sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2, OsPHQ1, OsPHq1, PHq1
730		Maekawa, M., K. Rikiishi, K. Matsuura and K. Noda	Genic analysis of rhizomatous trait of wild species (Oryza longistaminata) in rice.	Breeding Science	46(Suppl. 1)	323	1996	RHZ	Rhz(t), Rhz1
731		Maekawa, M., K. Rikiishi, T. Matsuura and K. Noda	Revertants originated from chlorophyll mutants from the distantly related rice varieties.	Breeding Science	46(Suppl. 2)	107	1996	CTB,YL	Ctb*, Ctb, Ctb1,,yl*
733		Malik, S.S., D.S. Brar and G.S. Khush	Identification of two new null alleles in traditional rice germplasm of Philippines.	RGN	12	206-207.	1995	CAT1,PGI1	Cat1, Cat_1,Pgi1(Pgia), Pgia, Pgi_1, Pgi1, GPI-A, PHI-A, Pgi-a, PGI-a
734		Minakuchi, S., H. Satoh and A. Yoshimura	Chromosomal location of some prolamin genes in rice.	Breeding Science	46(Suppl. 1)	103	1996	PRO2,PRO3,PRO5,PRO4,PRO1	Pro2*, Pro2,Pro3*, Pro3,Pro5*, Pro5,Pro4*, Pro4,Pro1*, Pro1
735		Miyahara, K., M. Kusaba, E. Sassa, S. Iida, T. Takano and T. Nishio	Analysis of glutelin gene in rice low glutelin line 'LGC-1'.	Breeding Science	46(Suppl. 1)	42	1996	LGC1	Lgc1 (LGC-1), Lgc1, LGC-1, glu1(t)*(Lgc1), glu1(t)*, glu8, Glu1
736		Morino, K., M. Issiki, M. Nakajima, T. Izawa and K. Shimamoto	Regulation of waxy gene expression in rice l.Is Wxb gene a splicing mutant ?	Breeding Science	45(Suppl. 2)	40	1995	WX1	wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx
737		Murai, M. and M. Iizawa	Effects of major genes controlling morphology of panicle in rice.	Breeding Science	44	247-255.	1994	RI,LAX1,CL,UR1,DN1,SP1	ri,lax, lax(lx), lx, OsbHLH123, bHLH123, OsLAX1, BOS1, OsBOS1,Cl,Ur1,Dn1,sp, SP, OsNPF4.1, NPF4.1, OsSP1
738		Murai, M., N. Shinbashi, S. Sato, K. Sato, H. Araki and M. Ehara	Effect of dwarfing gene from Dee-geo-woo-gen on culm and internode lengths, and its response to fertilizer in rice.	Breeding Science	45	7-14.	1995	D18,SD1	d18-h  (d18-I, d18h), dwf15, d25, d18, d18-k, d18-AD, d18-dy, OsGA3ox2, ga3ox2, OsGA3OX2, GA3OX2, OsGA3ox-2, GA3ox-2, GA3ox1,sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2, OsPHQ1, OsPHq1, PHq1
739		Murai, M., S. Sato, K. Ise and Y. Semihira	Effects of the dwarfing gene from Dee-geo-woo-gen and others on emergence ability under deep seeding condition in rice.	Breeding Science	45	163-171.	1995	D12,SD1	d12(d50), dwf11, d50, d12, d32, F71, DMT9,sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2, OsPHQ1, OsPHq1, PHq1
740		Nagamine, T., K. Kadowaki, A. Goto and T. Ajioka	A new source of cytoplasmic male sterility found in Bangladesh Boro rice.	RGN	12	232-235.	1995	[CMS-KHIABORO]	[cms-Khiaboro]*, [cms-Khiaboro]
741		Nagasawa, N., M. Miyoshi, H. Kitano, H. Satoh and Y. Nagato	Mutations associated with floral organ number in rice.	Planta.	198	627-633.	1996	FON2,FON1	fon2, OsFON2, FON4, OsFON4, FON2/FON4, TG1,OsFON1, fon1, OsRLCK219, RLCK219
742		Nagasawa, N., M. Miyoshi, Y. Sano and Y. Nagato	Superman-like mutations in rice.	Breeding Science	46(Suppl. 1)	165	1996	DL,FON1,FON2	OsDL, dl(lop), lop, dl, dl1, OsDRPq3, DRPq3,OsFON1, fon1, OsRLCK219, RLCK219,fon2, OsFON2, FON4, OsFON4, FON2/FON4, TG1
743		Nagasawa, N., M. Miyoshi and Y. Nagato	Superwoman mutations in rice flower.	Breeding Science	46(Suppl. 2)	271	1996	FON1,DL,SPW1	OsFON1, fon1, OsRLCK219, RLCK219,OsDL, dl(lop), lop, dl, dl1, OsDRPq3, DRPq3,SPW1, spw1, MADS16, OsMADS16
744		Nair S., J.S. Bentur, U. Prasada Rao and M. Mohan	DNA markers tightly linked to a gall midge resistance gene (Gm2) are potentially useful for marker-aided selection in rice breeding.	Theor. Appl. Genet.	91	68-73.	1995	GM2	Gm2, Gm-2, GM-2
745		Nakamura, S., K. Rybka, S. Asakawa, K. Akiyama, N. Ohmido, K. Fukui, N. Shimizu and S. Kawasaki	BAC contig construction around the rice blast resistance genes Pi-b and Pi-ta2 which is located in the centromeric region of chromosome 12.	Breeding Science	46(Suppl. 2)	51	1996		
746		Nakamura, H., Y. Toukairin, S. Hidaka, S. Ejiri and K. Tsutsumi	Genomic polymorphysm at the cytoplasmic aldolase-encoding loci and their different expression in rice varieties.	Breeding Science	46(Suppl. 2)	326	1996	PITA,ALD1,PIB	Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30, Trx30,Ald1*, Ald1,Pi b(Pi s), Pis, Pib, Pi-s, Pi-hy
747		Nishikubo, N., T. Araki, Y. Hirata, H. Kitano and Y. Katayama	Accumulation of polyphenolic substance in the cell wall of rice dwarf mutant (Fukei 71).	Breeding Science	46(Suppl. 2)	274	1996	D12	d12(d50), dwf11, d50, d12, d32, F71, DMT9
748		Ogi, Y., H. Kato, K. Maruyama and F. Kikuchi	The effects on the culm length and other agronomic characters caused by semidwarfing genes at the sd-1 locus in rice.	Japan. J. Breed.	43	267-275.	1993	SD1	sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2, OsPHQ1, OsPHq1, PHq1
749		Ohmori, T., W. Sakamoto, M. Maekawa and F. Motoyoshi	Analysis of the maize B-Peru homologues regulating anthocyanin accumulation in purple leaf lines of rice.	Breeding Science	46(Suppl. 1)	19	1996	PL	Pl, Pl1
750		Ohmori, T., M. Maekawa, W. Sakamoto and F. Motoyoshi	Isolation and analysis of cDNA homologues of the maize B-Peru gene in a purple leaf line of rice.	Breeding Science	46(Suppl. 2)	35	1996	PL	Pl, Pl1
751		Okumoto, Y., K. Ichitani, H. Inoue and T. Tanisaka	Photoperiod insensitivity gene essential to the varieties grown in the northern limit region of paddy rice (Oryza sativa L.) cultivation.	Euphytica	92	63-66.	1996	E3,E2,E1	,,E1 (=m Ef1+), mEf1+, Hd4(t), m Ef1-a, m Ef1-b
752		Okumoto, Y., M. Maekawa, K. Ichitani and T. Tanisaka	Complementary effect of a photoperiod sensitivity gene in Hokkaido rice varieties and that in a strong cold resistant rice variety Silewah.	Breeding Science	46:(Suppl. 1)	85	1996	SE1,E1	Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, OsHd1,  Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,E1 (=m Ef1+), mEf1+, Hd4(t), m Ef1-a, m Ef1-b
753		Pan, Q.H., T. Tanisaka and H. Ikehashi	Studies on the genetics and breeding of blast resistance in rice IV. Gene analysis for the blast resistance of a indica variety Kasalath.	Breeding Science	45(Suppl. 2)	170	1995	PI8	Pi8, Pi-8
754		Pan, Q.H., L. Wang, H. Ikehashi and T. Tanisaka	Identification of a new blast resistance gene in the indica rice cultivar Kasalath using Japanese differential cultivars and isozyme markers.	Phytopathology	86(10)	1071-1075.	1996	PIZT,PI8,PIZ,PII	Piz-t, Pi-zt, Pi-z(t), Pi2/Pizt, Pizt, Pi9, OsPiz-t,Pi8, Pi-8,Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2,Pi i, Pii, Pi-i, Pii(t)
755		Pan, Q.H., T. Tanisaka, H. Ikehashi and H. Yamagata	Studies on the genetics and breeding of blast resistance in rice V. Identification of two blast resistance genes in a Yunnan native variety, Maowangu.	Breeding Science	46(Suppl. 1)	79	1996	PI13,PI14	Pi13(t), Pi13(t)*, Pi13,Pi14(t), Pi14(t)*, Pi14
756		Pan, Q.H., T. Tanisaka and H. Ikehashi	Studies on the genetics and breeding of blast resistance in rice VI. Gene analysis for the blast resistance of two Yunnan native cultivars GA20 and GA25.	Breeding Science	46(Suppl. 2)	70	1996	PIK,PI15,PIKG	Pik, RMg8, Pi-k, Pik-2, Pik-1, Pik1, Pik2, Pik-H4, Pikp-1, Pikh-1, Pik1-H4, Pikh-2, Pik2-H4,Pi15(t), Pi15, RMg34.,Pikg, Pik-g
757		Reddy V.S., S. Dash and A.R. Reddy	Anthocyanin pathway in rice (Oryza sativa L.) identification of a mutant showing dominant inhibition of anthocyanins in leaf and accumulation of proanthocyanidins in pericarp.	Theor. Appl. Genet.	91	301-312.	1995	PL,ILB	Pl, Pl1,Ilb*, Ilb
758		Rybka, K., M. Miyamoto, K. Akiyama, S. Nakamura, N. Sasaki, I. Ando and S. Kawasaki	Physical mapping of a rice blast resistance gene Pi-b.	Breeding Science	45(Suppl. 2)	169	1995	PIB	Pi b(Pi s), Pis, Pib, Pi-s, Pi-hy
759		Saka, N. and A. Syumiya	Phenotype variations for test conditions and linkage relations between rice dwarf disease(RDV)-resistant and heading date at RDV resistant rice lines derived from c.v. Rantaj-emas2.	Breeding Science	46(Suppl. 2)	171	1996	GRH3	Grh3*, Grh3, Grh3(t)
760		Saka, N., T. Tuji, T. Toyama, H. Nakamae and T. Izawa	Linkage analysis of rice dwarf disease resistant gene Grh-a(t) in rice by RFLP analysis.	Breeding Science	46(Suppl. 2)	71	1996	GRH3	Grh3*, Grh3, Grh3(t)
761		Sano, Y. and S. Kobayashi	Cross-incompatibility based on genetic differentiation in both mega- and microspores in rice.	Breeding Science	46(Suppl. 1)	161	1996	CIF1	Cinf(t)*(Lcr), cinf(t), Cif, Lcr, Cinf
762		Sato, S., A. Tamaki and C. Shinjyo	Genetic relation between an earliness gene Ef-1 and anther length in rice, Oryza sativa L.	Breeding Science	44	127-132.	1994		
764		Sato, S., S. Ishikawa, M. Shimono and C. Shinjyo	Genetic studies on an awnness gene An-4 on chromosome 8 in rice, Oryza sativa L.	Breeding Science	46	321-327.	1996	AN4	An4
765		Sato, S., S. Irei and C. Shinjyo	Estimation of distribution of an earliness gene Ef-1 in Japanese improved rice varieties.	Breeding Science	46(Suppl. 2)	77	1996	EF1	Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 
766	8755613	Sato Y., S.-K. Hong, A. Tagiri, H. Kitano, N. Yamamoto, Y. Nagato and M. Matsuoka	A rice homeobox gene, OSH1, is expressd before organ differentiation in a specific region during early embryogenesis.	Proc. Natl. Acad. Sci. U.S.A.	93	8117-8122.	1996	ORL1,OSH1	orl1,OSKN1, Oskn1, OsKN1, OSH1/Oskn1, HB75
767		Satoh, H., T. Kumamaru, M. Ogawa, M. Siraishi, B. G. Im, M.Y. Son and Y. Takemoto	Spontaneous57H mutants in rice.	RGN	12	194-196.	1995	GLUP3	glup3(esp7), esp7, glup3, OsVPE1, VPE1, OsaLeg3
768		Satoh, N., S.K. Hong, H. Kitano, M. Matsuoka and Y. Nagato	Characterization of rice shootless mutants using several molecular markers.	Breeding Science	46(Suppl. 2)	270	1996	SHL1,SHL3,SHL2,SHL4	shl1, sh1,shl3, sh3,shl2, SHL2, sh2, OsRDR6, RDR6,shl4, sh4, OsAGO7, SHO2, AGO7, SHL4/SHO2
769		Shao, Y. and X.-H. Tang	Allelic relation between photoperiod-sensitive genic male-sterility and cytoplasmic-genic male sterility of BT type in rice.	RGN	12	231-232.	1995	MS1P,MS2P	ms1P*,ms2P*
770		Singh, K., D.S. Multani and G.S. Khush	A new spotted leaf mutant in rice.	RGN	12	192-193.	1995	SPL11	spl11, spl11*, OsPUB11, PUB11,  OsPUB11/SPL11, PUB11/SPL11
773		Singh, K., A. Sanchez and G.S. Khush	Linkage relationships of some marker genes in rice.	RGN	12	203-204.	1995	GF2,Z8,BC2	gf2,z8,bc2, bc-2
774		Singh, K., B. de los Reyes, D.S. Brar and G.S. Khush	Arm location of Adh-1 and Sdh-1 isozymes using secondary trisomics.	RGN	12	211-212.	1995	ADH1,SDH1	Adh1, Adh1/2, adh1/adh2, OsADH1,Sdh1, Skd
775		Son, M.Y., H. Satoh, Y. Takemoto and M. Ogawa	New type mutants for glutelin precursor in rice.	Breeding Science	46(Suppl. 1)	57	1996	GLUP5,GLUP6	Glup5(t)*, Glup5(t), Glup5,glup6(t), Glup6(t), Glup6, OsVPS9A, VPS9a, GPA2/VPS9a, GPA2, GLUP6/GEF
776		Subudhi, P.K., R.P. Borkakati, S.S. Virmani and N. Hung	Identification of RAPD markers linked to rice thermosensitive genetic male sterility gene by bulk segregant analysis.	RGN	12	228-231.	1995	TMS3	tms3(t)*, ms82
777		Sun, X.-L., H.-W. Cai, J.-C. Xu, L.-H. Zhu and X.-K. Wang	Two newly found aminopeptidase loci and allelic variation in Asian cultivars.	RGN	12	189-191.	1995	AMP5,AMP3,EST2,AMP6	Amp5,Amp3(Amp1), Amp_3, Amp-3, Amp3, Amp1,Est2, Est_2,Amp6(t)*, Amp6
778		Suzuki, Y., M. Ohsawa, J. Terao and U. Matsukura	Development of lipoxygenases in embryo and seedling of rice variety lacking lipoxygenase-3 in its seed during ripening and germination.	Breeding Science	46(Suppl. 1)	153	1996	LOX3	Lox3*, lox3(t), LOX-3, Lox3, OsLOX4, LOX4
779		Takamure, I. and H. Hayashi	The effects of temperature on character expression of mutants induced by gamma-ray irradiation to anther culture in rice.	Breeding Science	45(Suppl. 2)	174	1995	LKF,MIK	Lk f, Lkf,mi k, mik, mi2
780		Takamure, I. and H. Yoshimi	Genetic analyses of two small grain mutants induced in rice cultivars.	Breeding Science	46(Suppl. 2)	108	1996	LKF,MIK	Lk f, Lkf,mi k, mik, mi2
781		Takamure, I., M.C. Hong and T. Kinoshita	Genetic analyses for two kinds of mutants for long grain.	RGN	12	199-201.	1995	LK1	lk1(t), lkna, lk1
782		Takamure, I., M.C. Hong and T. Kinoshita	Genetic interactions between major genes concerned with grain size in rice.	Breeding Science	46(Suppl. 1)	78	1996	D2,LK1,D1,LKF,D11,MI,LKI1,LK2,MIK	d2, dwf2, CYP90D2, D2/CYP90D2, OsD2, SMG11, OsSMG11, D2/SMG11, OsD2a, OsD2b,lk1(t), lkna, lk1,d1, GPA1, GA1, OsGA1, RGA1, dwf1, XA7, RGA, D1/RGA1, D89, TGW5, OsTGW5, SRG5, OsSRG5,Lk f, Lkf,d11(d8), dwf10, d8, D11/CYP724B1, d11, CYP724B1, GNS4, OsD11, PMM1, OsPMM1, PMM1/D11, NBG4, OsCPB1, CPB1, CPB1/D11,Mii, Mi1,lk i1, lki1, lk-i-1,Lk2(t) (Lknb), Lknb, Lk2,mi k, mik, mi2
783		Takemoto, Y., M. Yoshii, M.Y. Son, M. Ogawa and H. Satoh	Deposition of glutelin precursors in protein bodies of 57H mutants in rice.	Breeding Science	46(Suppl. 2)	273	1996	GLUP3,GLUP1,GLUP2	glup3(esp7), esp7, glup3, OsVPE1, VPE1, OsaLeg3,Glup1(Esp5, Gup1), Gup1, Esp5, Glup1,glup2(esp6, gup2), esp6, gup2, glup2
784		Takita, T.	A new dominant gene for brown planthopper resistance found in an improved Japanese rice strain.	Breeding Science	46(Suppl. 1)	211	1996	BPH	Bph(t)*, Bph11
786		Teraishi. M., M. Kawase, Y. Okumoto and T. Tanisaka	Studies on the utilization of a mutator induced in rice 10. Isolation of DNA spots specific to a mutable slender-glume gene, slg, by RLGS method.	Breeding Science	45(Suppl. 2)	181	1995	SLG	slg, Rurm1, Urm1, OsSUMO7, SUMO7
787		Teraishi, M., H. Hirochika, Y. Okumoto and T. Tanisaka	Studies on the utilization of a mutator induced in rice. 11. Approach to map-based cloning of the slender glume gene slg using rice YAC library.	Breeding Science	46(Suppl. 2)	90	1996	SLG	slg, Rurm1, Urm1, OsSUMO7, SUMO7
788		Tooyama, T., T. Yamamoto, T. Tsuji, K. Fujii, M. Yano, Y. Nagamura, T. Sasaki and A. Shumiya	Chromosomal location of the brown plant hopper resistance gene Bph-1 revealed by RFLP mapping.	Breeding Science	45(Suppl. 2)	171	1995	BPH1	Bph1
789		Tsai, K.H.	Multiple alleles detected at the Ef-1 locus.	RGN	12	204-206.	1995		
790		Umemura, T., M. Kuroyanagi, P. Perata, Y. Futsuhara and J. Yamaguchi	Functional promoter analysis of rice alpha-amylase gene, RAmy3D (part 2).	Breeding Science	46(Suppl. 2)	31	1996	AMY3D,AMY3E	Amy3D/E*(RAmy3D/E), alpha Amy3, AmyII-4, AMY1.3, Amy3D, Amy3D/E*, RAmy3D/E, Amy3D_E, Amy8, aAmy3, RAmy3D, OsAmy3D, alphaAmy3, OsRamy3D,Amy3D/E*(RAmy3D/E), alpha Amy8, alphaAmy8, AmyII-3, AMY1.4, Amy3E, Amy3D/E*, RAmy3D/E, Amy9, RAmy3E, alphaAmy8-C, AMY3E/AMY1.4, OsAmy3E, OsRamy3E
791		Wan, J. and H. Ikehashi	Identification of a new locus S-16 causing hybrid sterility in native rice varieties (Oryza sativa L. ) from Tai-hu lake region and Yunnan province,China.	Breeding Science	45	461-470.	1995	S16	
792		Wan, J. and H. Ikehashi	A new locus for hybrid sterility in remote crosses of cultivated rice (Oryza sativa L.). VII.	Breeding Science	45(Suppl. 2)	191	1995	S17	S17(t)*
793		Wan, J. and H. Ikehashi	Evidence for mutational origin of hybrid sterility genes in rice (Oryza sativa L.).	Breeding Science	46	167-172.	1996	S7,S5	S7,S5-3, S5-4
794		Wan, J. and H. Ikehashi	A new locus for hybrid sterility in remote crosses of cultivated rice (Oryza sativa L.).	Breeding Science	46(Suppl. 1)	87	1996	S7,GA11	S7,ga11
795		Wan, J., T. Nakazaki and H. Ikehashi	Analyses of genetic loci for diameter of seminal root with marker genes in rice.	Breeding Science	46(Suppl. 2)	75	1996	DSE	Dse*, Dse
796		Wu, X., Y. Kuramoto, T. Saeda, K. Takeda and H. Kitano	Linkage found between the dominant and the recessive mutant gene, respectively expressingdm type internode elongation pattern in rice.	Breeding Science	46(Suppl. 1)	88	1996	SSI1,SSI2	Ssi1, Ssi1(Dm1)*, Dm1, Ssi1,ssi2*, ssi2
797		Xu, K. and D.J. Mackill	RAPD and RFLP mapping of a submergence tolerance locus in rice.	RGN	12	244-245.	1995	SUB1	Sub1, Sub1(Sub1A,Sub1B,Sub1C), Sub1A, Sub1B, Sub1C, Sub1
798		Xu, K. and D.J. Mackill	A major locus for submergence tolerance mapped on rice chromosome 9.	Molecular Breeding	2(3)	219-224.	1996	SUB1	Sub1, Sub1(Sub1A,Sub1B,Sub1C), Sub1A, Sub1B, Sub1C, Sub1
799		Yamamoto, T., Y. Kuboki, T. Nishikawa, M. Yano and T. Sasaki	Linkage analysis of QTL conferring heading date on chromosome 7 in rice.	Breeding Science	46(Suppl. 1)	83	1996	SE8	Se8(t)*
800		Yamamoto, T., M. Yano, S.Y. Lin and T. Sasaki	Hd-6, a newly detected quantitative trait locus conferring heading date in rice as revealed by analysis of backcross progenies.	Breeding Science	46(Suppl. 2)	59	1996	HD6	Hd6(t)*, OSCKA2, OsCKA2, CKA2, OsCKA2-1, CKA2-1, Hd6/CK2alpha, CK2alpha
802		Yano, M., T. Yamamoto, Y. Kuboki, S.Y. Lin, C. Orihara and T. Sasaki	Fine mapping of quantitative trait loci, Hd-3, associated with heading date in rice chromosome 6.	Breeding Science	46(Suppl. 2)	58	1996	E1,HD3A	E1 (=m Ef1+), mEf1+, Hd4(t), m Ef1-a, m Ef1-b,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a 
803		Yasuda, T., Y. Okumoto and H. Ikehashi	Analysis of complementary loci for delayed flowering in F1 hybrids of Indica-Japonica crosses.	Breeding Science	46(Suppl. 2)	64	1996	E1,SE1	E1 (=m Ef1+), mEf1+, Hd4(t), m Ef1-a, m Ef1-b,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, OsHd1,  Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21
804		Yasui, H., S. Yazawa, A. Yoshimura and N. Iwata	RFLP mapping of genes for resistance to Japanese green rice leafhopper (Nephotettix cincticeps Uhler) in rice cultivars DV 85 and IR 24.	Breeding Science	46(Suppl. 2)	174	1996	GRHB,GRHA	Grhb(t)*, Grhb, Grh4,Grha(t)*, Grha, Grh2
805		Yokoo, M.	Heading disturbance by long-day length treatment during reproductive stage in photoperiod-sensitive rice.	Breeding Science	44	67-70.	1994	SE1	Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, OsHd1,  Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21
806		Yokozeki, Y., A. Nakamura, A. Inagaki, N. Ichikawa, Y. Koshino, H. Akagi, H. Shimada, T. Tsuchiya, C. Shinjyo and T. Fujimura	DNA markers of a fertility restoration gene Rf-1 in rice, Oryza sativa L.	Breeding Science	46(Suppl. 1)	73	1996	RF1	Rf1 (Rf-1), rf-1, PPR791, PPR8-1, Rf-1, Rf1, Rf-1A, Rf5, Rf1a, RF5, Rf5(t)*(Rf(t)*), RF1A, PPR6, PLS31, OsPLS31
807		Yoshiba, Y., Y. Harada and Y. Futsuhara	Detection of a protein and differences in the population of translatable mRNA specific to dwarf rice   (Oryza sativa L.).	Japan. J. Breed.	43	525-535.	1993		
808		Yoshimura, S., Y. Umehara, N. Kurata, Y. Nagamura, T. Sasaki, Y. Minobe and N. Iwata	Identification of a YAC clone carrying the Xa-1 allele, a bacterial blight resistance gene in rice.	Theor. Appl. Genet.	93	117-122.	1996	XA1	Xa1(Xe), Xe, Xa1, Xa-1
809		Yoshihara, T., H. Washida and F. Takaiwa	Analysis of cis-regulatory regions involved in the endosperm specific expression of rice storage protein glutelin GluA-3 gene (5).	Breeding Science	46(Suppl. 1)	253	1996	GLU6	Glu6*(GluA4), Glu6, GluA4, GluA-4
810		Yu, Z.H., D.J. Mackill, J.M. Bonman, S.R. McCouch, E. Guiderdoni, J.L. Notteghem and S.D. Tanksley	Molecular mapping of genes for resistance to rice blast (Pyricularia grisea Sacc.).	Theor. Appl. Genet.	93	859-863.	1996	SALT,PI30,PI1,PITA	salT*(sal1), SalT1*, sal1, Sal1, SALT, ML, SalT, OsSalT, OsJRL, JRL, Osl43, OsL43, OsMBL1, MBL1, OsJRL01, JRL01, OsJRL1, JRL1,Pi-30(t), Pi30(t),Pi1, Pi-1, Pi1-5C, Pi1-6C,Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30, Trx30
811		Zhang, G., E.R. Angeles, M.L.P. Abenes, G.S. Khush and N. Huang	RAPD and RFLP mapping of the bacterial blight resistance gene xa-13 in rice.	Theor. Appl. Genet.	93	65-70.	1996	XA13	xa13, Xa13, Os8N3, Os-8N3, 8N3, OsSWEET11, SWEET11, OsSWEET11/Xa13, Xa13/Os8N3/SWEET11, Os8N3/Xa13, OsSWEET11/Os8N3, OsSWEET11a, SWEET11a
812		Zhang, Q., T. Abe and T. Sasahara	Selection of indica rice with colored endosperm and genetic analysis.	Breeding Science	46(Suppl. 2)	203	1996	PL	Pl, Pl1
813		Maheswaran, M., D.J. Mackill, N. Huang, S.R. Sreerangasamy and S.R. McCouch	Identification of RAPD markers linked to Se-3(t), a gene enhancing the level of photoperiod sensitivity in rice.	RGN	12	219-221.	1995	SE3	Se3(t), Se3
814		Dalmacio, R., D.S. Brar, L.A. Sitch, S.S. Virmani and G.S. Khush	Oryza perennis A new source of cytoplasmic male-sterility in rice.	RGN	9	108-110.	1992	[CMS-IR66707A]	[cms-IR66707A]*, [cms-IR66707A]
815		Dalmacio, R., D.S. Brar, T. Ishii, L.A. Sitch, S.S. Virmani and  G.S. Khush	Identification and transfer of a new cytoplasmic malesterility source from Oryza perennis into indica rice (O.sativa).	Euphytica	82	221-225.	1995	[CMS-IR66707A]	[cms-IR66707A]*, [cms-IR66707A]
816		Hiraiwa, S. and S. Tanaka	Induction of male-sterile mutation in rice.	Gamma Field Symposia	19	103-115.	1980		
817		Kadowaki, K., K. Yazaki, T. Osumi, K. Harada and M. Nakaghara	Mitochondrial DNA polymorphism in male-sterile cytoplasm of rice.	Theor. Appl. Genet.	75	234-236.	1988	[CMS-GAM],[CMS-SP]	[cms-GAM]*, [cms-GAM],[cms-sp]*, [cms-sp]
818	2148966	Kadowaki,K.I., Suzuki,T. and Kazama,S.	A chimeric gene containing the 5' portion of atp6 is associated with cytoplsmic male-sterility of rice.	Mol. Gen. Genet.	224	10-16.	1990	[CMS-BO],_,AATP6	[cms-bo],atp6, N-atp6, B-ATP6, B-atp6, atp6-1,A-atp6
819		Lin, S.C. and L.P. Yuan	Hybrid rice breeding in China.	In Innovative Approaches to Rice Breeding. IRRI, Manila, Philippines.		35-51.	1980	[CMS-GAM],[CMS-HL],[CMS-WA]	[cms-GAM]*, [cms-GAM],[cms-HL],[cms-WA]
820		Mese, M.D., L.E. Azzini and J.N. Rutger	Isolation of genetic male-sterile mutants in a semidwarf japonica rice cultivar.	Crop Sci.	24	523-525.	1984		
821		Oard, J.H. and J. Hu	Inheritance and characterization of pollen fertility in photoperiodically sensitive rice mutants.	Euphytica	82	17-23.	1995	PMS	pms(t)*
822		Oard, J.H., J. Hu and J.N. Rutger	Genetic analysis of male-sterility in rice mutants with environmentally influenced levels of fertility.	Euphytica	55	179-186.	1991	PMS	pms(t)*
823		Sakamoto, W., K. Kadowaki, S. Tano and T. Yabuno	Analysis of mitochondrial DNAs from Oryza glaberrima and its cytoplasmic substituted line for Oryza sativa associated with cytoplasmic male-sterility.	Jpn. J. Genet.	65	1-6.	1990	[CMS-AK]([CMS-JP])	[cms-ak]([cms-jp]), [cms-jp], [cms-ak]
824		Shen, Y.W., Q.H. Cai and M.W. Gao	Preliminary characterization of fertilty-restoring mutants induced from cytoplasmic male-sterile rice.	RGN	10	90-92.	1993	RF1	Rf1 (Rf-1), rf-1, PPR791, PPR8-1, Rf-1, Rf1, Rf-1A, Rf5, Rf1a, RF5, Rf5(t)*(Rf(t)*), RF1A, PPR6, PLS31, OsPLS31
825		Shen, Y.W., Q.H. Cai and M.W. Gao	A new thermosensitive radiation-induced male sterile rice line.	RGN	10	97-98.	1993	TMS	tms(t)*, ms83
826		Shen, Y., Q. Cai, M. Gao and X. Wang	Isolation and genetic characterization of a fertility-restoring revertant induced from cytoplamic male sterile rice.	Euphytica	90	17-23.	1996	RF1	Rf1 (Rf-1), rf-1, PPR791, PPR8-1, Rf-1, Rf1, Rf-1A, Rf5, Rf1a, RF5, Rf5(t)*(Rf(t)*), RF1A, PPR6, PLS31, OsPLS31
827		Singh, R.J. and H. Ikehashi	Monogenic male-sterility in rice Induction, identification and  inheritance.	Crop Sci.	21	286-289.	1981	MS IR36(T)*	ms IR36(t)*), msIR36, ms66, MS IR36
828		Trees, S.C. and J.N. Rutger	Inheritance of four genetic male steriles in rice.	J. Hered.	69	270-272.	1978		
829		Virmani, S.S., R.V. Kumar and C. Casal	Cytoplasmic diversity among CMS lines of rice.	RGN	6	127-129.	1989	[CMS-ARC],[CMS-GAM],[CMS-SP]	[cms-ARC]*, [cms-ARC] [mt], [cms-ARC],[cms-GAM]*, [cms-GAM],[cms-sp]*, [cms-sp]
830		Wang, B., W.W. Xu, J.Z. Wang, W. Wu, H.G. Zheng, Z.Y. Yang, J.D. Ray and H.T. Nguyen	Tagging and mapping the thermo-sensitive genic male-sterile gene in rice (Oryza sativa.L.) with molecular markers.	Theor. Appl. Genet.	91	1111-1114.	1995		
833		Ahn, S.N., Y.K. Kim, S.S. Han, H.C. Choi, H.P. Moon and S.R. McCouch	Molecular mapping of a gene for resistance to a Korean isolate of rice blast.	RGN	13	74-76.	1996	PI18	Pi18(t)*, Pi18(t), Pi18, Pi-18(t), Pi-18
834		Aida, T., S. Niikura and I. Takamure	Genetic interactions between mutant genes concerned with spikelet morphogenesis in rice.	Breeding Science	47(Suppl. 1)	49	1997	LHS1,DP2	OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO, OsLHS1, OsLG3b, LG3b, qLGY3, LGY3, DLN80, OsDLN80, OLR, OsOLR, GW3p6, OsGW3p6, OsMADS1GW3p6, MADS1GW3p6, qLGY3/OsLG3b/GW3p6,dp2
835	8983188	Akagi, H., Y. Yokozeki, A. Inagaki, A. Nakamura and T. Fujimura	A codominant DNA marker closely linked to the rice nuclear restorer gene, Rf-1, identified with inter-SSR fingerprinting.	Genome	39	1205-1209.	1996	RF1	Rf1 (Rf-1), rf-1, PPR791, PPR8-1, Rf-1, Rf1, Rf-1A, Rf5, Rf1a, RF5, Rf5(t)*(Rf(t)*), RF1A, PPR6, PLS31, OsPLS31
836		Akagi, H., Y. Yokozeki, A. Inagaki and T. Fujimura	Microsatellite DNA markers for rice chromosomes.	Theor. Appl. Genet.	93	1071-1077.	1996		
837		Antonio, B.A., T. Inoue, H. Kajiya, Y. Nagamura, N. Kurata, Y. Minobe, M. Yano, M. Nakagahra and T. Sasaki	Comparison of genetic distance and order of DNA markers in five populations of rice.	Genome	39	946-956.	1996		
838		Antonio, B.A., A. Shomura, T. Shimano, Y. Kuboki, S.Y. Lin, T. Inoue, H. Kajiya, Y. Harushima, K. Yamamoto, Y. Nagamura, N. Kurata, M. Yano, Y. Minobe and T. Sasaki	High-density linkage map of rice with expressed sequence tags.	Rice Genetics III. IRRI, Manila, Philippines.		31-46.	1996		
839		Ashikari, M., O. Ideta, A. Yoshimura and N. Iwata	Fine map of d-1 gene in rice.	RGN	13	76-78.	1996	D1	d1, GPA1, GA1, OsGA1, RGA1, dwf1, XA7, RGA, D1/RGA1, D89, TGW5, OsTGW5, SRG5, OsSRG5
840		Ashikawa, I., Y. Umehara, H. Tanoue, Z. Wang, S. Saji, T. Shimokawa, K. Yoshino, J. Wu, B. Antonio, K. Koike, W.Van Houten, A. Idonuma, E.  Emoto, N. Kurata and T. Sasaki	Construction of a first-generation physical map of the rice genome.	Rice Genetics III. IRRI, Manila, Philippines.		85-95.	1996	EG1	eg1, GY1, OsEG1, OsGY1
841		Babu, R.C., H.G. Zheng, M.S. Pathan, M.L. Ali, A. Blum and H.T. Nguyen	Molecular mapping of drought resistance traits in rice.	Rice Genetics III. IRRI, Manila, Philippines.		637-642.	1996		
842		Bi, X.Z., Y.C. Song, N. Ren and L.H. Liu	Physical mapping of CaM and  Ca2+-ATPase genes in rice by in situ hybridization.	RGN	13	85-89.	1996	ATP,CALA	ATP*(atp1), ATPX, atp1,CALa*, Cal1, CaM-2, CAM2, CAM, OsCaM2, OsCam2, OsCaM1, CaM1
843		Blair, M.W. and S.R. McCouch	Development of diagnostic markers for the bacterial blight resistance gene, xa5.	Rice Genetics III. IRRI, Manila, Philippines.		582-589.	1996	XA5,XA21	xa5, xa-5, Xa5, TFIIAy, OsTFIIAgamma5, TFIIAgamma5, OsTFIIAgamma5/Xa5,Xa21*, Xa21, OsXA21
844		Cheng, R., A. Saito, Y. Takano and Y. Ukai	Estimation of the position and effect of a lethal factor locus on a molecular marker linkage map.	Theor. Appl. Genet.	93	494-502.	1996	L	L*
845	8984005	Cho, Y.G., M.W. Blair, O. Panaud and S.R. McCouch	Cloning and mapping of variety-specific rice genomic DNA sequences amplified fragment length polymorphisms (AFLP) from silver-stained polyacrylamide gels.	Genome	39	373-378.	1996		
846		Cho, Y.G., M.W. Blair, O. Panaud and S.R. McCouch	Cloning and mapping of amplified fragment length polymorphisms (AFLPs) in rice from silver-stained polyacrylamide gels.	RGN	13	161-165.	1996		
847		Chung, M.C. and H.K. Wu	Cytological identification of the chromosomes involved in Nishimura's rice translocation lines.	Theor. Appl. Genet.	88	956-964.	1994		
848		Dung, L.V. and Y. Sano	Dissection of a gene complex responsible for photoperiod sensitivity.	RGN	13	72-74.	1996	SEPAT	se-pat(t), sepat(t)*(se), sepat(t)*
849		Endo, N., T. Ogawa and G.S. Khush	Isozyme classification of Myanmar rice cultivars resistant to bacterial blight.	Breeding Science	47	27-32.	1997	AMP1,XA10,XA5,XA4,XA3	Amp1(Lap1,LapF), LapF, Lap1, Amp1,Xa10, Xa-10,xa5, xa-5, Xa5, TFIIAy, OsTFIIAgamma5, TFIIAgamma5, OsTFIIAgamma5/Xa5,Xa4, Xa4(Xa4a), Xa-4, Xa4-a, WAK, wak, xa4,Xa-3, Xa3 (Xa4b, Xa6, Xa9, Xa w), Xa3, Xaw, Xa6, Xa9, Xa4-b, XA26, Xa26(t), Xa26(t)*, Xa26, RKb, MRKb, MRKB, TRKb, Xa3/Xa26
850		Fujii, K., Y. Hayano-Saito, A. Shumiya, T. Izawa and M. Iwasaki	Inheritance of Pb-st (t), a panicle blast resistance gene and detection of RFLP markers which link to Pb-st (t).	Breeding Science	47(Suppl. 1)	38	1997	PBST*	Pbst*
851		Fukui, K.	Advances in rice chromosome research,  1990-95.	Rice Genetics III. IRRI, Manila, Philippines.		117-130.	1996		
852		Fukui, K.	Current status in rice chromosome research.	RGN	13	27-35.	1996		
853		Fukuoka, S., K. Okuno and H. Namai	Linkage analysis of the genes controlling hybrid breakdown in cultivated rice.	Breeding Science	47(Suppl. 1)	32	1997	HWD1,HWD2	hwd1,hwd2
854		Fukuta, Y.	RFLP mapping of a shattering-resistance gene in the mutant line, SR-1 induced from an indica rice variety, Nan-jing 11.	Breeding Science	45	15-19.	1995	SD1,SH2	sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2, OsPHQ1, OsPHq1, PHq1,sh2
855		Fukuta, Y., Y. Harushima and M. Yano	Using quantitative trait locus analysis for studying genetic regulation of shattering.	Rice Genetics III. IRRI, Manila, Philippines.		657-662.	1996		
856		Gale, M.D., K.M. Devos and G. Moore	Rice as the pivotal genome in the new era of grass comparative genetics.	Rice Genetics III. IRRI, Manila, Philippines.		77-84.	1996		
857	1356266	Gustafson, J.P. and J.E. Dille	Chromosomal location of Oryza sativa recombination linkage groups.	Proc. Natl. Acad. Sci. U.S.A.	89	8646-8650.	1992		
858		Hamada, M., K. Yamamoto, T. Sasaki and T. Hino	cDNA sequence of a novel rice serine/threonine protein kinase.	RGN	13	154-157.	1996		
859		Harata, Y., Y. Tuchimine and R. Ishikawa	Genetic characterization of Japanese upland rice and gene block on chromosome 11 Chromosomal polymorphic region (CPR).	RGN	13	44-46.	1996	PGD1	Pgd1, 6Pgd1
860		Harrington, S.E., H.F.J. Bligh, W.D. Park, C.A. Jones and S.R. McCouch	Linkage mapping of starch branching enzyme III in rice (Oryza sativa L.) and prediction of location of orthologous genes in other grasses.	Theor. Appl. Genet.	94	564-568.	1997	SBE3	SBEIII*, SBEIII, Sbe3, RBE3, QEIIa, QEIIA, BEIIb, BEIIB, SBEIIb, OsBEIIb, sbe3, SBE III, OsSBEIIb, SBEIIb
861		Harushima, Y., N. Kurata, M. Yano, Y. Nagamura, T. Sasaki, Y. Minobe and M. Nakagahra	Detection of segregation distortions in an indica-japonica rice cross using a high-resolution molecular map.	Theor. Appl. Genet.	92	145-150.	1996		
862		Hirano, H-Y., M. Eiguchi and Y. Sano	A point mutation, G to T, causes the differentiation of the Wxb allele from Wxa allele, which is specific to Japonica rice.	RGN	13	148-149.	1996	WX1	wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx
863		Hirabayashi, H. and T. Ogawa	RFLP mapping of brown planthopper resistance gene Bph-1 in rice.	IRRN	21(2-3)	54-55.	1996		
864		Ichii, M. and M. Ishikawa	Genetic analysis of newly induced short-root mutants in rice (Oryza sativa L. ).	Breeding Science	47	121-125.	1997	SRT1	srt1*, srt1
865		Ichii M. and Z.W. Liang	Morphological characteristics and its inheritance of a short-root mutant RM10 in rice.	Breeding Science	47(Suppl. 1)	310	1997	SRT4	srt4*, srt4
866		Ichitani, K., T. Tanaka, Y. Okumoto and T. Tanisaka	Gene analysis of the rice cultivar Kasalath with special reference to two photoperiod sensitivity loci, E1 and Se-1.	Breeding Science	47(Suppl. 1)	51	1997	SE1,E1	Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, OsHd1,  Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,E1 (=m Ef1+), mEf1+, Hd4(t), m Ef1-a, m Ef1-b
867		Ichitani, K., Y. Okumoto and T. Tanisaka	Photoperiod sensitivity gene of Se-1 locus found in photoperiod insensitive rice cultivars of the northern limit region of rice cultivation.	Breeding Science	47	145-152.	1997	SE1,E1	Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, OsHd1,  Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,E1 (=m Ef1+), mEf1+, Hd4(t), m Ef1-a, m Ef1-b
868		Ideta, O., A. Yoshimura and N. Iwata	An integrated linkage map of rice.	Rice Genetics III. IRRI, Manila, Philippines.		47-56.	1996		
869		Iida, S., M. Kusaba and T. Nishio	Mutants lacking glutelin subunits in rice mapping and combination of mutated glutelin genes.	Theor. Appl. Genet.	94	177-183.	1997	GLU3,GLU2,LGC1	glu3(t)*, glu10, LGLU3,glu2(t)*, glu9, LGLU2,Lgc1 (LGC-1), Lgc1, LGC-1, glu1(t)*(Lgc1), glu1(t)*, glu8, Glu1
870		Iijima, K., K. Kakeda and K, Fukui	Identification and characterization of somatic rice chromosomes by imaging methods.	Theor. Appl. Genet.	81	597-605.	1991		
871		Ikehashi, H. and J. Wan	Differentiation of alleles at seven loci for hybrid sterility in cultivated rice (Oryza sativa L.).	Rice Genetics III. IRRI, Manila, Philippines.		404-408.	1996	S7,S8,S15,S9,S16,S5	S7,,S15(S10), S10,,,S5-3, S5-4
872		Inukai, T. and A. Sako	Determination of chromosomal location of blast resistance gene in West African upland cultivar Moroberekan.	Breeding Science	47(Suppl. 1)	268	1997	PI5-2,PI3	Pi3, Pi5, Pi-3(t), Pi-3, Pi3(t), Pi5(t), Pi5-2, Pii,  RMg22, RMg21,Pi3, Pi5, Pi-3(t), Pi-3, Pi3(t), Pi5(t), Pi5-1, Pii,  RMg22, RMg21
873		Inukai, T., R.J. Nelson, R.S. Zeigler, S. Sarkarung, D.J. Mackill, J.M. Bonman, I. Takamure and T. Kinoshita	Genetic analysis of blast resistance in tropical rice cultivars using near-isogenic lines.	Rice Genetics III. IRRI, Manila, Philippines.		447-450.	1996	PI12,PIZ,PI1,PI3,PI5-2,PI7,PIZ5,PITA	Pi12(t), Pi12(t)*, Pi12, Pi-12(t) ,Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2,Pi1, Pi-1, Pi1-5C, Pi1-6C,Pi3, Pi5, Pi-3(t), Pi-3, Pi3(t), Pi5(t), Pi5-1, Pii,  RMg22, RMg21,Pi3, Pi5, Pi-3(t), Pi-3, Pi3(t), Pi5(t), Pi5-2, Pii,  RMg22, RMg21,Pi7, Pi-7(t), Pi7(t),Piz-5, Pi-z5, Piz5, Pi-2(t), Pi-2, Pi2,Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30, Trx30
874		Ishikawa, R. and M. Freeling	Putative transposase-like domain found in rice genome.	RGN	13	146-147.	1996		
875		Itadani, H., K. Yamamoto and T. Sasaki	Partial sequences of rice cDNAs putatively identified as encoding protein kinases.	RGN	13	150-154.	1996		
876		Itoh, K. and K. Shimamoto	Gene silencing at the waxy gene of rice.	Breeding Science	47(Suppl. 1)	113	1997	WX1	wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx
877		Itoh, J., H. Kitano and Y. Nagato	Genes affecting shoot apical meristem and leaf primordia differentiation.	RGN	13	100-102.	1996	SHO2,SHO1	sho2,sho1, DCL4, OsDCL4, Os DCL4, Dcl4 
878		Itoh, J., H. Kitano and Y. Nagato	Developmental genetics of shoot organization. -Mutation affecting plastochron and panicle differentiation.-	Breeding Science	47(Suppl. 1)	314	1997		
879		Kaji, R. and T. Ogawa	RFLP mapping of blast resistance gene Pi-km in rice.	IRRN	21(2-3)	47	1996	PIK	Pik, RMg8, Pi-k, Pik-2, Pik-1, Pik1, Pik2, Pik-H4, Pikp-1, Pikh-1, Pik1-H4, Pikh-2, Pik2-H4
880		Kaji, R., T. Ogawa and M. Nishimura	RFLP mapping of a blast resistance gene, Pi-t, in rice.	Breeding Science	47(Suppl. 1)	37	1997	PIT,PISH	Pit, Pit(K59), Pit(Npb), Pi-t, PitNpb, PitK59, Pit1, OsPit1,Pi sh, Pish, Pi-sh, Pish(t)
881		Kajiya, H., T. Shimano, L. Monna, M. Yano and T. Sasaki	Effective production of RFLP markers between closely related varieties of rice by genomic subtraction.	Breeding Science	46	387-391.	1996		
882		Kamijima, O., T. Tanisaka and T. Kinoshita	Gene symbols for dwarfness.	RGN	13	19-25.	1996	SD1,D59,SD8,SD7,SDG,D58,D60	sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2, OsPHQ1, OsPHq1, PHq1,d59(t), dwf40, d59,sd8(t), sd8,sd7, sd7(t),sdg*, sd11,d58, dwf39,d60 (sd(t)), sd(t), dwf41, d60
883	8156157	Kamisugi, Y., N. Furuya, K, Iijima and K. Fukui	Computer-aided automatic identification of rice chromosomes by image parameters.	Chromosome Res.	1	189-196.	1993		
884		Katsuta-seki, M., K. Ebana and K. Okuno	QTL analysis for mesocotyl elongation in rice.	RGN	13	126-127.	1996		
885		Kawasaki, S., K. Rybka, M. Miyamoto, Y. Tanaka, M. Kataoka, A. Saito and I. Ando	Positional cloning of rice blast resistance genes.	Rice Genetics III. IRRI, Manila, Philippines.		675-680.	1996	PIB,PITA	Pi b(Pi s), Pis, Pib, Pi-s, Pi-hy,Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30, Trx30
886		Kawasaki, S., S. Nakamura, T. Suzuki, I. Wisniewska, N. Sasaki, H. Seki and K. Shinozaki	Delineation of rice blast resistance gene Pi-b region on a BAC contig spanning flanking markers and a trial of cDNA search within the region.	Breeding Science	47(Suppl. 1)	36	1997	PIB	Pi b(Pi s), Pis, Pib, Pi-s, Pi-hy
887		Khush, G.S., K. Singh, T. Ishii, A. Parco, N. Huang, D.S. Brar and D.S. Multani	Centromere mapping and orientation of the cytological, classical and molecular linkage maps of rice.	Rice Genetics III. IRRI, Manila, Philippines.		57-75.	1996		
888	7651834	Kilian, A., D.A. Kudrna, A. Kleinhofs, M. Yano, N. Kurata, B. Steffenson and T. Sasaki	Rice-barley synteny and its application to saturation mapping of the barley Rpg1 region.	Nucleic Acids Res.	23	2729-2733.	1995		
889		Kobayashi, S. and Y. Sano	Three genes involved in the unidirectional cross-incompatibility system observed in a sativa-rufipogon hybrid.	RGN	13	119-121.	1996	CIM,SUCIF,CIF1	cinm*, CINM, cim, cinm,SuCinf*, SUCINF, Su-Cif, Su Cinf,Cinf(t)*(Lcr), cinf(t), Cif, Lcr, Cinf
890		Kushalappa, K., M.B. Suresh Kumar, L. Patwardhan and U. Vijayraghavan	Isolation and characterization of genes that control inflorescence.	Rice Genetics III. IRRI, Manila, Philippines.		888-893.	1996	MP1,MP2	mp1,mp2
891		Li, Z., S.R.M. Pinson, J.W. Stansel and W.D. Park	Identification of quantitative trait loci (QTLs) for heading date and plant height in cultivated rice (Oryza sativa L.).	Theor. Appl. Genet.	91	374-381.	1995		
892		Li, Z., S.R.M. Pinson, M.A. Marchetti, J.W. Stansel and W.D. Park	Characterization of quantitative trait loci (QTLs) in cultivated rice contributing to field resistance to sheath blight (Rhizoctonia solani).	Theor. Appl. Genet.	91	382-388.	1995		
893		Li, Z., S.R.M. Pinson, A.H. Paterson, W.D. Park and J.W. Stansel	Genetics of hybrid sterility and hybrid breakdown in an interspecific rice   (Oryza sativa L.) population.	Rice Genetics III. IRRI, Manila, Philippines.		409-417.	1996		
894		Li, Z., S.R.M. Pinson, W.D. Park, A.H. Paterson and J.W. Stansel	Mapping quantitative trait loci and quantitative-trait-modifying factors affecting three grain yield components in rice (Oryza sativa L.).	Rice Genetics III. IRRI, Manila, Philippines.		624-630.	1996		
895	9093864	Li, Z., S.R.M. Pinson, A.H. Paterson, W.D. Park and J.W. Stansel	Genetics of hybrid sterility and hybrid breakdown in an interspecific rice (Oryza sativa L.) population.	Genetics	145	1139-1148.	1997		
896		Lin, H.-X., H.-R. Qian, J.-Y. Zhuang, J. Lu, S.-K. Min, Z.-M. Xiong, N. Huang and K.-L. Zheng	Interval mapping of QTLs for yield and other related characters in rice.	RGN	12	251-253.	1995		
897	0	Lin, H.-X., H.-R. Qian, J.-Y. Zhuang, J. Lu, Z.-M. Xiong, S.-K. Min, N. Huang and K.-L. Zheng	RFLP mapping of major genes and minor genes for heading date in rice.	RGN	12	253-255.	1995		
898		Lin, H.-X., H.-R. Qian, J.-Y. Zhuang, J. Lu, S.-K. Min, Z.-M. Xiong, N. Huang and K.-L. Zheng	RFLP mapping of QTLs for yield and related characters in rice (Oryza sativa L.).	Theor. Appl. Genet.	92	920-927.	1996		
899		Lu, C., L. Shen, Z. Tan, Y. Xu, P. He, Y. Chen and L. Zhu	Comparative mapping of QTLs for agronomic traits of rice across environments using a doubled haploid population.	Theor. Appl. Genet.	93	1211-1217.	1996		
900		Lu, C., L. Shen, Z. Tan, Y. Xu, P. He, Y. Chen and L. Zhu	Comparative mapping of QTLs for agronomic traits of rice across environments by using a doubled-haploid population.	Theor. Appl. Genet.	94	145-150.	1997		
901		Mackill, D.J. and K. Xu	Genetics of seedling-stage submergence tolerance in rice.	Rice Genetics III. IRRI, Manila, Philippines.		607-612.	1996	SUB1	Sub1, Sub1(Sub1A,Sub1B,Sub1C), Sub1A, Sub1B, Sub1C, Sub1
902		Mackill, D. J., Z. Zhang and E. D. Redona	Comparison  of AFLP, microsatellite and RAPD marker polymorphism in rice.	RGN	12	245-248.	1995		
903	8890522	Mackill, D. J., Z. Zhang, E. D. Redona and P. M. Colowit	Level of polymorphism and genetic mapping of AFLP markers in rice.	Genome	39	969-977.	1996		
904		Maekawa, M.	Recent information on anthocyanin pigmentation.	RGN	13	25-26.	1996	IPL6,PL	IPl6,Pl, Pl1
905		Maekawa, M.	Identifying cold tolerance gene(s) in rice at the booting stage.	Rice Genetics III. IRRI, Manila, Philippines.		428-433.	1996		
906		Maekawa, M., T. Ohmori, W. Sakamoto, F. Motoyoshi, C. Miyazaki, A. Saito, K. Rikiishi, H. Kawaguchi, T. Matsuura and K. Noda	Mapping of Ra-homologous cDNA isolated from PlW type purple rice.	Breeding Science	47(Suppl. 1)	48	1997	PL	Pl, Pl1
907		Maekawa, M., T. Kumagai and T. Sato	Ultraviolet-B-responsive anthocyanin production and growth response on near-isogenic lines of Pl alleles in rice plant.	Breeding Science	47(Suppl. 1)	311	1997	PL	Pl, Pl1
908		Maheswaran, M., P.K. Subudhi, S. Nandi, J.C. Xu, A. Parco, D.C. Yang and N. Huang	Polymorphism, distribution and segregation of AFLP markers in a doubled haploid rice population.	Theor. Appl. Genet.	94	39-45.	1997		
909		Malik, S.S. and G.S. Khush	A simplified procedure for classification of rice (Oryza sativa) germplasm based on single isozyme locus.	RGN	13	42-43.	1996	CAT1	Cat1, Cat_1
910		Malik, S.S. and G.S. Khush	Identification of wide compatibility varieties (WCV's) and tagging of WC gene with isozyme markers.	RGN	13	121-124.	1996	EST2,AMP3,S5	Est2, Est_2,Amp3(Amp1), Amp_3, Amp-3, Amp3, Amp1,S5-3, S5-4
911		McCouch, S., O. Panaud, X. Chen and Y. Xu	Development of microsatellite markers and characterization of simple sequence length polymorphism in rice  (Oryza sativa L.).	Rice Genetics III. IRRI, Manila, Philippines.		549-559.	1996		
912		Mei, M., C. Zhuang, R. Wang, J. Wu, W. Hu and G. Kochert	Genetic analysis and tagging of gene for brown planthopper resistance in indica rice.	Rice Genetics III. IRRI, Manila, Philippines.		590-595.	1996	BPH	Bph(t)*, Bph11
913		Mikami, I., H. Nagano, M. Eiguchi, H.-Y. Hirano and Y. Sano	Genetic characterization of opaque endosperms.	RGN	13	134-136.	1996	WX1	wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx
914		Mikami, I., H. Nagano, H. Hirano and Y. Sano	Tissue specific expression of opaque endosperm (WxOP) mutants in rice.	Breeding Science	47(Suppl. 1)	308	1997	WX1	wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx
915		Miyao, A., K. Yamamoto, C. Hamamatsu, H. Itadani, Y. Koga-Ban, K. Koike, S. Kojima, H. Nagasaki, T. Shimizu, Y. Shinozuka, J. Song, U. Yamanouchi, M. Yoshikawa, L. Monna, H. Sun Zhong, H. Ichimura and T. Sasaki	Application of cDNA sequence information for characterization of the rice genome.	Rice Genetics III. IRRI, Manila, Philippines.		97-104.	1996		
916		Monna, L., A. Miyao, H.S. Zhong, M. Yano, M. Iwamoto, Y. Umehara, N. Kurata, H. Hayasaka and T. Sasaki	Saturation mapping with subclones of YACs DNA marker production targeting the rice blast disease resistance gene, Pi-b.	Theor. Appl. Genet.	94	170-176.	1997	PIB	Pi b(Pi s), Pis, Pib, Pi-s, Pi-hy
917	7583118	Moore, G., K.M. Devos, Z. Wang and M.D. Gale	Grasses, line up and form a circle.	Curr. Biol.	5	737-739.	1995		
918	7732576	Moore, G., T. Foote, T. Helentjaris, K. Devos, N. Kurata and M. Gale	Was there a single ancestral cereal chromosome?	Trends Genet.	11(3)	81-82.	1995		
919		Nagamura, Y., T. Inoue, B.A. Antonio, T. Shimano, H. Kajiya, A. Shomura,     S. Y. Lin, Y. Kuboki, Y. Harushima, N. Kurata, Y. Minobe, M. Yano and T. Sasaki	Conservation of duplicated segments between rice chromosomes 11 and 12.	Breeding Science	45	373-376.	1995		
920		Nagasawa, N., M. Miyoshi., Y. Sano and Y. Nagato	DL regulates both leaf and pistil development in rice.	RGN	13	102-105.	1996	DL	OsDL, dl(lop), lop, dl, dl1, OsDRPq3, DRPq3
921		Nagasawa, N., M. Miyoshi and Y. Nagato	Mutations affecting flower organization in rice.	Breeding Science	47(Suppl. 1)	313	1997	FOR1	for1*, for1
922		Nair, S., A. Kumar, M.N. Srivastava and M. Mohan	PCR-based DNA markers linked to a gall midge resistance gene, Gm4t, has potential for marker-aided selection in rice.	Theor. Appl. Genet.	92	660-665.	1996	GM4	Gm4(t)*, Gm4(t), Gm4, Gm4t
923		Nakamura, I., N. Kameya and H. Kanzaki	Tnr1-like element in the first intron of a type 2 metallothionein-like gene showing root specific expression in rice.	RGN	13	157-161.	1996		
924		Nakazaki, T. and H. Ikehashi	Isolation and analysis of a new chitinase gene Chi-4(t) in rice.	Breeding Science	47(Suppl. 1)	272	1997	CHT4	Cht4(t)*(Chi4), Chi4, Cht4, OsChia2b, Chi-4, CHIT2, OsCHIT2, PR3, OsPR3
925		Naqvi, N.I., J.M. Bonman, D.J. Mackill, R.J. Nelson and B.B. Chattoo	Identification of RAPD markers linked to a major blast resistance gene in rice.	Molecular Breeding	1	341-348.	1995	PI10	Pi10(t)*, Pi10, Pi-10t, Pi-10, Pi-10(t)
926	8851795	Naqvi, N.I. and B.B. Chattoo	Development of a sequence characterized amplified region (SCAR) based indirect selection method for a dominant blast-resistance gene in rice.	Genome	39	26-30.	1996	PI10	Pi10(t)*, Pi10, Pi-10t, Pi-10, Pi-10(t)
927		Naqvi, N.I. and B.B. Chattoo	Molecular genetic analysis and sequence characterized amplified region-assisted selection of blast resistance in rice.	Rice Genetics III. IRRI, Manila, Philippines.		570-576.	1996	PI157,PI10	Pi157*, Pi157(t)*, Pi-157, Pi157,Pi10(t)*, Pi10, Pi-10t, Pi-10, Pi-10(t)
928		Nelson, R.J., E. Ardales, M. Baraoidan, I. Yap, M.L.C. George, D.H. Chen, M. Finckh, A. Bordeos, C.M. Vera Cruz, T. Adhikari, C.C. Mundt, M. Bustamam, W. Cruz, H. Leung, N. Huang, A. Yoshimura, S. McCouch, T.W. Mew and J.E. Leach	Exploring the application of molecular markers for improving resistance to bacterial blight.	Rice Genetics III. IRRI, Manila, Philippines.		267-277.	1996	XA5,XA10,XA21,XA7,XA4	xa5, xa-5, Xa5, TFIIAy, OsTFIIAgamma5, TFIIAgamma5, OsTFIIAgamma5/Xa5,Xa10, Xa-10,Xa21*, Xa21, OsXA21,Xa7,Xa4, Xa4(Xa4a), Xa-4, Xa4-a, WAK, wak, xa4
929		Nonomura, K.I., A. Yoshimura and N. Iwata	Cytogenetical gene mapping by reciprocal translocation and tertiary trisomic analyses in rice (Oryza sativa L.).	Genes Genet. Syst.	72	41-49.	1997		
930		Ogawa, T.	Monitoring race distribution and identification of genes for resistance to bacterial leaf blight.	Rice Genetics III. IRRI, Manila, Philippines.		456-459.	1996	XA5,XA10,XA4,XA3	xa5, xa-5, Xa5, TFIIAy, OsTFIIAgamma5, TFIIAgamma5, OsTFIIAgamma5/Xa5,Xa10, Xa-10,Xa4, Xa4(Xa4a), Xa-4, Xa4-a, WAK, wak, xa4,Xa-3, Xa3 (Xa4b, Xa6, Xa9, Xa w), Xa3, Xaw, Xa6, Xa9, Xa4-b, XA26, Xa26(t), Xa26(t)*, Xa26, RKb, MRKb, MRKB, TRKb, Xa3/Xa26
931		Ohmido, N.	Rice chromosomes studies by fluorescence in situ hybridization with special reference to physical mapping and chromosome structure.	J. Fac. Agr. Hokkaido Univ.	66	277-320.	1995	R45S3	R45s3*, R45s3
932		Ohmido, N. and K. Fukui	Cytological studies of African cultivated rice, Oryza glaberrima.	Theor. Appl. Genet.	91	212-217.	1995		
933		Ohmido, N. and K. Fukui	A new manual for fluorescence in situ hybridization (FISH) in plant chromosomes.	RGN	13	89-93.	1996		
934		Ohmido, N., H. Ohtsubo, E. Ohtsubo and K. Fukui	Physical mapping of several genes in rice using fluorescent in situ hybridization.	Rice Genetics III. IRRI, Manila, Philippines.		467-470.	1996		
935		Ohtsuka, R., M. Yoshii, Y. Takemoto, H. Satoh and M. Ogawa	Intracellular distribution of 57kDa polypeptides in 57H mutants of rice (Oryza sativa L. ).	Breeding Science	47(Suppl. 1)	312	1997	GLUP1,GLUP2,ESP2,GLUP3,GLUP4	Glup1(Esp5, Gup1), Gup1, Esp5, Glup1,glup2(esp6, gup2), esp6, gup2, glup2,esp2(rsp2), rsp2, esp2, PDIL1-1,glup3(esp7), esp7, glup3, OsVPE1, VPE1, OsaLeg3,glup4(esp8), esp8, glup4, OsRab5B2, Rab5a, OsRab5a, GPA1/Rab5a, GPA, GLUP4/Rab5, GLUP4/Rab5a, GPA1, OsGPA1
936		Okumoto, Y., H. Inoue, K. Ichitani and T. Tanisaka	Effects of three genes that control heading date (Se1, E1 and Ef1) in four varietal groups of japonica rice.	Rice Genetics III. IRRI, Manila, Philippines.		423-427.	1996	SE1,E2,EF1,E3,E1	Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, OsHd1,  Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,,Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,,E1 (=m Ef1+), mEf1+, Hd4(t), m Ef1-a, m Ef1-b
937		Okumoto, Y., K. Ichitani, H. Inoue and T. Tanisaka	Location of the late heading-time gene locus E3.	Breeding Science	47(Suppl. 1)	31	1997	E3	
938		Pan, Q.H., T. Tanisaka and H. Ikehashi	Studies on the genetics and breeding of blast resistance in rice VII. Gene analysis for the blast resistance of Indian native cultivar, Aus 373.	Breeding Science	47(Suppl. 1)	35	1997	PI16,PI17	Pi16(t), Pi16, Pi-16(t),Pi17(t), Pi17, Pi-17(t)
939	8654913	Panaud, O., X. Chen and S.R. McCouch	Frequency of microsatellite sequences in rice (Oryza sativa L. ).	Genome	38	1170-1176.	1995		
940		Peng, Y.L., Y. Qin, Y. Yang and J. Huang	Isolation and characterization of lipoxygenases from rice induced by incompatible infection of rice blast fungus, Magnaporthe grisea.	Rice Genetics III. IRRI, Manila, Philippines.		835-841.	1996	LOX3	Lox3*, lox3(t), LOX-3, Lox3, OsLOX4, LOX4
941		Ray, J.D., L. Yu, S.R. McCouch, M.C. Champoux, C. Wang and H.T. Nguyen	Mapping quantitative trait loci associated with root penetration ability in rice (Oryza sativa L.).	Theor. Appl. Genet.	92	627-636.	1996		
942		Reddy, A.R.	Genetic and molecular analysis of the anthocyanin pigmentation pathway in rice.	Rice Genetics III. IRRI, Manila, Philippines.		341-352.	1996	PL,ILB,CHS	Pl, Pl1,Ilb*, Ilb,CHS*, Oschs, chs, chas, OsCHS, OsCHS1, CHS1, OsPKS26, PKS26, OsCHS24, CHS24, OsCHS27, CHS27
943		Reddy, A. R., B. Scheffler, M. N. Srivastava, K. Arvind, R. V. Satyanarayan, N. Suresh, and M. Madan	Chalcone synthase (CHS) gene in rice (Oryza sativa L.): expression and molecular mapping	Plant Genome IV, San Diego, California, USA		57	1996	CHS	CHS*, Oschs, chs, chas, OsCHS, OsCHS1, CHS1, OsPKS26, PKS26, OsCHS24, CHS24, OsCHS27, CHS27
944		Redona, E.D. and D.J. Mackill	Mapping quantitative trait loci for seedling vigor in rice using RFLPs.	Theor. Appl. Genet.	92	395-402.	1996		
945		Redona, E.D. and D.J. Mackill	Molecular mapping of quantitative trait loci in japonica rice.	Genome	39	395-403.	1996		
946		Robeniol, J.A., S.V. Constantino, A.P. Resurreccion, C.P. Villareal, B. Ghareyazie, B.-R. Lu, S.K. Katiyar, C.A. Menguito, E.R. Angeles, H.-Y. Fu, S. Reddy, W. Park, S.R. McCouch, G.S. Khush and J. Bennett	Sequence-tagged sites and low-cost DNA markers for rice.	Rice Genetics III. IRRI, Manila, Philippines.		293-306.	1996		
947		Ronald, P., W.-Y. Song, G.-L. Wang, L.-L. Chen, H.-S. Kim, L.-Y. Pi, T. Holsten, B. Wang, C. Williams, W.-X. Zhai, L.-H. Zhu and C. Fauquet	The rice disease resistance gene, Xa21, encodes a receptor kinase-like protein.	Rice Genetics III. IRRI, Manila, Philippines.		247-253.	1996	XA21	Xa21*, Xa21, OsXA21
948		Saghai Maroof, M.A., G.P. Yang, R.M. Biyashev, P.J. Maughan and Q. Zhang	Analysis of the barley and rice genomes by comparative RFLP linkage mapping.	Theor. Appl. Genet.	92	541-551.	1996		
949		Saito, K., K. Miura, K. Nagano, Y. Hayano-Saito, A. Saito, H. Araki and A. Kato	Chromosomal location of quantitative trait loci for cool tolerance at the booting stage in rice variety 'Norin-PL8'.	Breeding Science	45	337-340.	1995		
950		Saka, N., T. Toyama, T. Tuji, H. Nakamae and T. Izawa	Green ricehopper resistant gene Grh-3(t) and screening of Grh-3(t) among green ricehopper resistant and green leafhopper resistant cultivars in rice.	Breeding Science	47(Suppl. 1)	55	1997	GRH3	Grh3*, Grh3, Grh3(t)
951		Sano, Y. and S. Kobayashi	Genetic dissection of crossability in rice.	Rice Genetics III. IRRI, Manila, Philippines.		381-385.	1996	CIF1	Cinf(t)*(Lcr), cinf(t), Cif, Lcr, Cinf
952		Sato, H., A. Ishizaka, K. Nagao and M. Ichii	A new locus, cnx 3 involved in molybdenum cofactor biosynthetic pathway in rice.	Breeding Science	47(Suppl. 1)	212	1997	CNX2,CNX3,CNX1	cnx2*, cnx2, cnx 2,cnx3*, cnx3, cnx 3,cnx1*, cnx1, cnx 1
953		Sato, S., M. Yoshigi, M. Shimono and C. Shinjyo	Effect of temperature during fertilization on an action of a gametophytic gene on Chromosome 8 in rice.	Breeding Science	47(Suppl. 1)	52	1997	GAX	gax*, gax, ga-x, ga15
954		Sawamura, N. and Y. Sano	Chromosomal location of gamete eliminator, S11(t), found in an Indica-Japonica hybrid.	RGN	13	70-71.	1996	S11	S11(t)
955		Sebastian, L.S., R. Ikeda, N. Huang, T. Imbe, W.R. Coffman, M. Yano, T. Sasaki and S.R. McCouch	Genetic mapping of resistance to rice tungro spherical virus (RTSV) and green leafhopper (GLH) in ARC11554.	Rice Genetics III. IRRI, Manila, Philippines.		560-564.	1996	GLH,TSV1	Glh(t)*, Glh, Glh14,tsv1(RTSV), RTSV, tsv1
956		Shen, Y., Z. Guan, H. Qiang, J. Lu, K. Zheng and X. Wang	Identification of RAPD markers linked to fertility restoring gene of rice cytoplasmic male sterile line.	RGN	13	115-117.	1996	RF1	Rf1 (Rf-1), rf-1, PPR791, PPR8-1, Rf-1, Rf1, Rf-1A, Rf5, Rf1a, RF5, Rf5(t)*(Rf(t)*), RF1A, PPR6, PLS31, OsPLS31
957		Shi, C.H., J. Zhu, R.C. Zang and G.L. Chen	Genotype x environment interaction effects and heterosis analysis for cooking quality traits of indica rice.	RGN	13	130-132.	1996		
958		Shimizu, A., J. Wan and H. Ikehashi	Genetic markers for tolerance to iron toxicity in rice.	RGN	13	132-134.	1996	EST2,EST1	Est2, Est_2,Est1
959		Shishido, R., Y. Sano and K. Fukui	The third 45S rDNA locus in O. eichingeri (CC) newly detected by an improved FISH method.	RGN	13	84-85.	1996	R45S4,R45S3	R45s4*, R45s4,R45s3*, R45s3
960	8650237	Singh, K., T. Ishii, A. Parco, N. Huang, D.S. Brar and G.S. Khush	Centromere mapping and orientation of the molecular linkage map of rice (Oryza sativa L.).	Proc. Natl. Acad. Sci. U.S.A.	93	6163-6168.	1996		
961	8722800	Singh, K., D.S. Multani and G.S. Khush	Secondary trisomics and telotrisomics of rice Origin, characterization and use in determining the orientation of chromosome map.	Genetics	143	517-529.	1996		
962		Sobrizal, A. Yoshimura and N. Iwata	Allelic variation at the gametophyte gene (ga2) locus in rice (Oryza sativa L.).	Rice Genetics III. IRRI, Manila, Philippines.		391-395.	1996	GA2	ga2
963		Song, Y.C. and J.P. Gustafson	Physical mapping of the 5S rDNA gene complex in rice (Oryza sativa).	Genome	36	658-661.	1993		
964		Song, Y.C. and J.P. Gustafson	The physical location of fourteen RFLP markers in rice (Oryza sativa L.).	Theor. Appl. Genet.	90	113-119.	1995		
965		Srivastava, M.N., A. Kumar, S.K. Shrivastava and R.K. Sahu	A new gene for resistance to gallmidge in rice variety Abhaya.	RGN	10	79-80.	1993	GM4	Gm4(t)*, Gm4(t), Gm4, Gm4t
966		Subudhi, P.K., R.P. Borkakati, S.S. Virmani and N. Huang	Inheritance and molecular mapping of the thermosensitive genic male sterility gene in rice.	Rice Genetics III. IRRI, Manila, Philippines.		601-606.	1996	TMS3	tms3(t)*, ms82
967	18464818	Subudhi, P.K., R.P. Borkakati, S.S. Virmani and N. Huang	Molecular mapping of a thermosensitive genetic male sterility gene in rice using bulked segregant analysis.	Genome	40	188-194.	1997	TMS3	tms3(t)*, ms82
968		Suh, H.S., Y.I. Sato and H. Morishima	Genetic characterization of weedy rice (Oryza sativa L. ) based on morpho-physiology, isozymes and RAPD markers.	Theor. Appl. Genet.	94	316-321.	1997	EST10	Est10
969		Tabien, R.E, S.R.M. Pinson, M.A. Marchetti, Z. Li, W.D. Park, A.H. Paterson and J.W. Stansel	Blast resistance genes from Teqing and Lemont.	Rice Genetics III. IRRI, Manila, Philippines.		451-455.	1996	PIB1,PIQ2,PIQ3,PIQ4,PIQ1,PIB2	Pib1*, pib1*t, Pib1,Piq2*, Pitq2*, Pitq2,Piq3*, Pitq3*, Pitq3,Piq4*, Pitq4*, Pitq4,Piq1*, Pitq1*, Pitq1, Pi-tq1, Pitq-1,Pib2*, Pilm2, Pib2
970		Takahashi, M., N. Nagasawa and Y. Nagato	Mutations affecting panicle architecture in rice.	RGN	13	97-99.	1996	PAP1	pap1
971		Takamure, I. and T. Kinoshita	Genetic analysis of morphological mutations in rice spikelets.	Rice Genetics III. IRRI, Manila, Philippines.		387-390.	1996	LHS1,MLS3,MIK	OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO, OsLHS1, OsLG3b, LG3b, qLGY3, LGY3, DLN80, OsDLN80, OLR, OsOLR, GW3p6, OsGW3p6, OsMADS1GW3p6, MADS1GW3p6, qLGY3/OsLG3b/GW3p6,mls3,mi k, mik, mi2
972		Takemoto, Y., M. Ogawa, T. Kumamaru, M.Y. Son and H. Satoh	Characterization of the protein bodies and the polypeptides in esp-2 mutant of rice.	RGN	13	106-110.	1996	GLUP3,GLUP2,GLUP1,ESP2	glup3(esp7), esp7, glup3, OsVPE1, VPE1, OsaLeg3,glup2(esp6, gup2), esp6, gup2, glup2,Glup1(Esp5, Gup1), Gup1, Esp5, Glup1,esp2(rsp2), rsp2, esp2, PDIL1-1
973		Tamura, K., Y. Fukuta, M. Hirae, S. Oya, I. Ashikawa and T. Yagi	Genetic analysis of the green rice leafhopper (Nephotettix cincticeps UHLER) resistance III. RFLP mapping of the resistant gene in Norin PL2.	Breeding Science	47(Suppl. 1)	54	1997	GRH1	Grh1
974		Tang, S.X., G.S. Khush and D.S. Brar	Identification of a null allele in traditional rice germplasm of Taiwan, China.	RGN	13	53-54.	1996	CAT1,EST9	Cat1, Cat_1,Est9 (Est c1), Est8, Estcl, Est c1, Est_9
975	9205840	Tanoue, H., T. Shimokawa, J. Wu, N. Sue, Y. Umehara, I Ashikawa, N. Kurata and T. Sasaki	Ordered YAC clone contigs assigned to rice chromosomes 3 and 11.	DNA Res.	4	133-140.	1997		
976		Taura, S., M. Asahiro and F. Shimotu	Reaction of F2 population from the cross of BJ1/IR24 to the Japanese bacterial blight pathogens.	Breeding Science	47(Suppl. 1)	269	1997	XA13,XA5	xa13, Xa13, Os8N3, Os-8N3, 8N3, OsSWEET11, SWEET11, OsSWEET11/Xa13, Xa13/Os8N3/SWEET11, Os8N3/Xa13, OsSWEET11/Os8N3, OsSWEET11a, SWEET11a,xa5, xa-5, Xa5, TFIIAy, OsTFIIAgamma5, TFIIAgamma5, OsTFIIAgamma5/Xa5
977		Teraishi, M., H. Hirochika, A. Shimizu, Y. Okumoto and T. Tanisaka	Studies on the utilization of a mutator induced in rice. 12. Construction of YAC contig including the mutable slender glume gene (slg) locus and identification of YAC clones localizing it.	Breeding Science	47(Suppl. 1)	53	1997	SLG	slg, Rurm1, Urm1, OsSUMO7, SUMO7
978		Tomita, M.	The gametic lethal gene gal activated only in the presence of the semidwarfing gene d60 in rice.	Rice Genetics III. IRRI, Manila, Philippines.		396-403.	1996	GAL	gal(lt), It-m, lt, gal
979		Tragoonrung, S., J.Q. Sheng and A. Vanavichit	Tagging an aromatic gene in lowland rice using bulk segregant analysis.	Rice Genetics III. IRRI, Manila, Philippines.		613-618.	1996	SK2(T)(SCL, FGR)	sk2(t)(scl, fgr), fgr, scl, BAD2, BADH2, sk2, OsBADH2, Badh2, badh2, Os2AP, BADH-2, OsALDH10A8, ALDH10A8 
980		Tsai, K.H.	A gene, w-Ef-1(t), for weakening the effect of early-heading.	RGN	13	78-80.	1996	WEF1	wEfl
981		Tsunematsu, H., A. Yoshimura, Y. Harushima, Y. Nagamura, N. Kurata, M. Yano, T. Sasaki and N. Iwata	RFLP framework map using recombinant inbred lines in rice.	Breeding Science	46	279-284.	1996		
982		Tsunematsu, H., A. Yoshimura, M. Yano and N. Iwata	Quantitative trait locus analysis using recombinant inbred lines and restriction fragment length polymorphism markers in rice.	Rice Genetics III. IRRI, Manila, Philippines.		619-623.	1996		
983		Uemura, Y.J., H. Satoh, M. Ogawa, H. Suehisa, T.C. Katayama and A. Yoshimura	Chromosomal location of genes encoding glutelin polypeptides in rice.	Rice Genetics III. IRRI, Manila, Philippines.		471-476.	1996	GLU2,GLU3,GLU4,GLU5,GLU6,GLU7,GLU1	Glu2t*(Glu2), Glu2t*, Glu2t, Glu2, Glu13,Glu3t*(Glu3), Glu3t*, Glu3t, Glu3, Glu14,,Glu4t*(Glu4), Glu4, Glu4t, Glu4t*, Glu15,Glu5t*(Glu5), Glu5, Glu5t, Glu5t*,Glu6t*(Glu6,GluB,C,E), GluE, GluB, Glu6t*, GluC, Glu6t, Glu6, Glu17,Glu7t*(Glu7,GluA), GluA, Glu7t, Glu7, Glu18,Glu1t*(Glu1), Glu1t*, Glu1t, Glu1, Glu12
984		Umehara, Y., A. Inagaki, H. Tanoue, Y. Yasukochi, Y. Nagamura, S. Saji, Y. Otsuki, T. Fujimura, N. Kurata and Y. Minobe	Construction and characterization of a rice YAC library for physical mapping.	Molecular Breeding	1	79-89.	1995		
985	9205839	Umehara, Y., N. Kurata, I. Ashikawa and T. Sasaki	Yeast artificial chromosome clones of rice chromosome 2 ordered using DNA markers.	DNA Res.	4	127-131.	1997		
986		Uozu, S., D.S. Brar, G.S. Khush and K. Fukui	Survey of Oryza australiensis chromosomes in the backcross progeny of O.sativa x O. australiensis by FISH.	RGN	13	82-84.	1996		
987		Van Houten, W., N. Kurata, Y. Umehara, T. Sasaki and Y. Minobe	Generation of a YAC contig encompassing the extra glume gene, eg, in rice.	Genome	39	1072-1077.	1996	EG1	eg1, GY1, OsEG1, OsGY1
988		Wan, J. and H. Ikehashi	List of hybrid sterility gene loci (HSGLi) in cultivated rice (Oryza sativa L.).	RGN	13	110-114.	1996	S15,S8,S7,S9,S17,S16,S5	S15(S10), S10,,S7,,S17(t)*,,S5-3, S5-4
989		Wan, J., Y. Yamaguchi, H. Kato and H. Ikehashi	Two new loci for hybrid sterility in cultivated rice (Oryza sativa L.).	Theor. Appl. Genet.	92	183-190.	1996	S15,EST1,S9,MAL1	S15(S10), S10,Est1,,Mal1, Mal I, Mal-I, Mal-1
990		Wang, B., W.W. Xu, J.Z. Wang, M.L. Weng, M.Y. Li, R.C. Yang and H.T. Nguyen	Tagging and mapping the thermosensitive genic male-sterile gene of rice with molecular markers.	Rice Genetics III. IRRI, Manila, Philippines.		596-600.	1996	TMS1	tms1 (TGMS), ms80, tms-1, tms(t)
991		Wang, Z.X. and N. Iwata	Aneuhaploids and tetrasomics in rice (Oryza sativa L. ) derived from anther culture of trisomics.	Genome	38	696-705.	1995		
992		Wang, Z.X. and N. Iwata	Characterization of four induced chromosome deficiencies in rice (Oryza sativa L.).	Genome	39	307-313.	1996		
993		Wang, Z.X. and N. Iwata	The origin, identification and plant morphology of five rice monosomics.	Genome	39	528-534.	1996		
994		Wang, Z.X., N. Kurata, S. Saji, Y. Katayose and Y. Minobe	A chromosome 5-specific repetitive DNA sequence in rice (Oryza sativa L.).	Theor. Appl. Genet.	90	907-913.	1995		
995		Williams, C.E., B. Wang, T.E. Holsten, J. Scambray, F. de Assis Goes da Silva and P.C. Ronald	Markers for selection of the rice Xa21 disease resistance gene.	Theor. Appl. Genet.	93	1119-1122.	1996	XA21	Xa21*, Xa21, OsXA21
996	1860377	Wu, H.K., M.C. Chung, T. Wu, C.N. Ning and R. Wu	Localization of specific repetitive DNA sequences in individual rice chromosomes.	Chromosoma	100	330-338.	1991		
997		Wu, H.-K., T.-C. Chen and M.-C. Chung	Glutelin genes in rice species.	Rice Genetics III. IRRI, Manila, Philippines.		877-883.	1996	GLUA3,GLUA1,GLUA2	Glua3*, GLUA-3, GT22, GT3, Glu21, GluA-3, OsEnS-47, EnS-47, GLU3,Glua1*, Glua1, GLUA-1, GluA-1, GluA1, Glu19, OsEnS-16,Glua2*, Glua2, GLUA-2, GluA-2, Glu20, GluA2, OsEnS-137
998	8654915	Wu, J., E. Matsui, K. Yamamoto, Y. Nagamura, N. Kurata, T. Sasaki and Y. Minobe	Genomic organization of 57 ribosomal protein genes in rice   (Oryza sativa L.) through RFLP mapping.	Genome	38	1189-1200.	1995		
999		Wu, K.S., C. Martinez, Z. Lentini, J. Tohme, F.G. Chumley, P.A. Scolnik and B. Valent	Cloning a blast resistance gene by chromosome walking.	Rice Genetics III. IRRI, Manila, Philippines.		669-674.	1996	PI62,PI67	Pi62(t)*(=Pita?), Pi62(t)*, Pi62, Pi62(t), Pi-62(t),Pi67(t)*, Pi67, Pi67(t)
1000		Wu, L.H., H. Nagano, S. Kawasaki, Y. Kishima and Y. Sano	Molecular genetic analysis in the vicinity of rice wx locus using BAC library toward the isolation of a gamate eliminator gene S10.	Breeding Science	47(Suppl. 1)	77	1997	S10	
1001		Wu, X., K. Hattori, K. Takeda and H. Kitano	Genetic analysis and gene interaction in rice dm-type mutants showing a pseudo-normal plant type.	Breeding Science	47(Suppl. 1)	210	1997	SSI2,SSI1	ssi2*, ssi2,Ssi1, Ssi1(Dm1)*, Dm1, Ssi1
1002		Xiao, J., J. Li, L. Yuan, S.R. McCouch and S.D. Tanksley	Genetic diversity and its relationship to hybrid performance and heterosis in rice as revealed by PCR-based markers.	Theor. Appl. Genet.	92	637-643.	1996		
1003		Xiao, J., J. Li, L. Yuan and S.D. Tanksley	Dominance as the major genetic basis of heterosis in rice.	Rice Genetics III. IRRI, Manila, Philippines.		327-340.	1996		
1004		Xiao, J., J. Li, L. Yuan and S.D. Tanksley	Identification of QTLs affecting traits of agronomic importance in a recombinant inbred population derived from a subspecific rice cross.	Theor. Appl. Genet.	92	230-244.	1996		
1005		Xie, Q.J., J.H. Oard and M.C. Rush	Genetic analysis of an unstable, purple-red hull rice mutation derived from tissue culture.	J. Hered.	86(2)	154-156.	1995	PR	Pr(Rp), Rp, Pr
1006		Yadav, R., B. Courtois and N. Huang	RFLP mapping of genes controlling root morphology in an indica/japonica doubled haploid population.	Rice Genetics III. IRRI, Manila, Philippines.		643-649.	1996		
1007		Yadav, R., B. Courtois, N. Huang and G. McLaren	Mapping genes controlling root morphology and root distribution in a doubled-haploid population of rice.	Theor. Appl. Genet.	94	619-632.	1997		
1008		Yamagishi, M., M. Yano, Y. Fukuta, K. Fukui, M. Otani and T. Shimada	Distorted segregation of RFLP markers in regenerated plants derived from anther culture of an F1 hybrid of rice.	Genes Genet. Syst.	71	37-41.	1996		
1009		Yamamoto, T., T. Sasaki and M. Yano	Genetic analysis of spreading stub in rice.	Breeding Science	47(Suppl. 1)	41	1997	SPK	Spk(t), Spk(t)*), Spk, OsTAC1, TAC1, qTAC9 
1010		Yamamoto, T., T. Sasaki and M. Yano	Genetic analysis of spreading stub using indica/japonica backcrossed progenies in rice.	Breeding Science	47	141-144.	1997	SPK	Spk(t), Spk(t)*), Spk, OsTAC1, TAC1, qTAC9 
1011		Yamamoto, T., A. Nishikawa, Y. Nakajima, K. Oeda and H. Hirohara	Genetic and morphological studies on glabrousness of a somaclonal variant induced by anther culture in rice (Oryza sativa L.).	Breeding Science	47	1-6.	1997	GL1	gl1, NUDA/GL-1, NUDA/GL1, NUDA, GL-1, OsWOX3B, OsWOX2, OsWOX3, Os WOX3, WOX3B, WOX2, WOX3, LSY1, OsLSY1, DEP, OsDEP
1012		Yano, M. and Y. Harushima	Genetic dissection of quantitative traits in rice using molecular markers.	Recent Advances in Breeding	36	29-32.	1994		
1013		Yano, M., H. Yoshiaki, Y. Kuboki, S.Y. Lin, Y. Nagamura, N. Kurata, T. Sasaki and Y. Minobe	QTL analysis as an aid to tagging genes that control heading time in rice.	Rice Genetics III. IRRI, Manila, Philippines.		650-656.	1996		
1014		Yasuda, T., Y. Okumoto and H. Ikehashi	Analysis of complementary loci for delayed flowering in F1 hybrid of Indica-Japonica crosses II. Identification of a complementary locus for Se-1.	Breeding Science	47 (Suppl. 1)	40	1997	E1,SE1	E1 (=m Ef1+), mEf1+, Hd4(t), m Ef1-a, m Ef1-b,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, OsHd1,  Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21
1015		Yasui, H. and N. Iwata	Ditelosomic alien addition lines of rice (Oryza sativa L.) carrying a pair of telocentric chromosomes of O. punctata Kotschy.	RGN	13	80-82.	1996		
1016		Yoshimura, A., J.X. Lei, T. Matsumoto, H. Tsunematsu, S. Yoshimura, N. Iwata, M.R. Baraoidan, T.W. Mew and R.J. Nelson	Analysis and pyramiding of bacterial blight resistance genes in rice by using DNA markers.	Rice Genetics III. IRRI, Manila, Philippines.		577-581.	1996	XA11,XA5,XA10,XA3,XA7,XA4	Xa11(Xa pt), Xa11, Xapt,xa5, xa-5, Xa5, TFIIAy, OsTFIIAgamma5, TFIIAgamma5, OsTFIIAgamma5/Xa5,Xa10, Xa-10,Xa-3, Xa3 (Xa4b, Xa6, Xa9, Xa w), Xa3, Xaw, Xa6, Xa9, Xa4-b, XA26, Xa26(t), Xa26(t)*, Xa26, RKb, MRKb, MRKB, TRKb, Xa3/Xa26,Xa7,Xa4, Xa4(Xa4a), Xa-4, Xa4-a, WAK, wak, xa4
1017		Zhang, G. and Y. Lu	Genetics of F1 pollen sterility in Oryza sativa.	Rice Genetics III. IRRI, Manila, Philippines.		418-422.	1996	SD,SA,SC,SE,SF,SB	Sd*, S-d, Hst19,Sa*, S-a, Hst16,Sc*, S-c, Hst18,Se*, S-e, Hst20,Sf*, S-f, Hst21,Sb*, S-b, Hst17, S24, F5-Du
1018		Zhang, G., Y. Lu and N. Huang	Molecular mapping of fertility-restoring gene Rf-3 in rice.	IRRN	21(2-3)	16-17.	1996	RF3	Rf3* (R2, Rf2), Rf2, R2, Rf3, Rf-3
1019		Zhang, G., T.S. Bharaj, Y. Lu, S.S. Virmani and N. Huang	Mapping of the Rf-3 nuclear fertility-restoring gene for WA cytoplasmic male sterility in rice using RAPD and RFLP markers.	Theor. Appl. Genet.	94	27-33.	1997	RF3	Rf3* (R2, Rf2), Rf2, R2, Rf3, Rf-3
1020		Zhang, L. and K. Hattori	Genetic analysis of regeneration ability in rice seed-callus.	Genes Genet. Syst.	71	313-317.	1996	SHD	Shd(t)*, Shd
1021		Zhang, Q, M.A. Saghai Maroof, G.P. Yang, K.D. Liu, Z.Q. Zhou, K.A. Gravois, C.G. Xu and Y.J. Gao	Relationships between molecular marker polymorphism and hybrid performance in rice.	Rice Genetics III. IRRI, Manila, Philippines.		317-325.	1996		
1022		Zhang, Y., I.H. Somantri, S. Tobita, T. Nagamine and T. Senboku	Variation of salt tolerance at germination in cultivated rice (Oryza sativa L. ) varieties.	SABRAO Journal	28(2)	15-23.	1996	SALT	salT*(sal1), SalT1*, sal1, Sal1, SALT, ML, SalT, OsSalT, OsJRL, JRL, Osl43, OsL43, OsMBL1, MBL1, OsJRL01, JRL01, OsJRL1, JRL1
1023		Zheng, K.L., J.Y. Zhuang, J. Lu, H.R. Qian and H.X. Lin	Identification of DNA markers tightly linked to blast resistance genes in rice.	Rice Genetics III. IRRI, Manila, Philippines.		565-569.	1996	IPI,PI12	IPi(t)*, IPi. Rmg56,Pi12(t), Pi12(t)*, Pi12, Pi-12(t)
1024		Zhu, L., C. Lu, P. Li, L. Shen, Y. Xu, P. He and Y. Chen	Using doubled haploid populations of rice for quantitative trait locus mapping.	Rice Genetics III. IRRI, Manila, Philippines.		631-636.	1996		
1025		Zhuang, C., G. Zhang, M. Mei and Y. Lu	Molecular mapping of genes for F1 pollen sterility in rice.	IRRN	21(2-3)	20-21.	1996	SC	Sc*, S-c, Hst18
1026		Zhuang, J.Y., H.X. Lin, J. Lu, H.R. Qian, S. Hittalmani, N. Huang and K.L. Zheng	Analysis of QTL x Environment interaction for yield components and plant height in rice.	RGN	13	127-129.	1996		
1027		Borkakati, R. and S.S. Virmani	Inheritance of a thermosensitive genic male-sterile mutant of Indica rice.	RGN	10	92-94.	1993	TMS3	tms3(t)*, ms82
1138		Shishido, R., T. Kinoshita, N. Ohmido and K. Fukui	Analysis and utility of chromosome information 68. The third rice 45SrDNA locus locates on the chromosome 11.	Breeding Science	44(Suppl. 2)	2	1994	R45S3	R45s3*, R45s3
5010		Lu, C.G., K. Takabatake and H. Ikehashi	Identification of segregation-distortion-neutral alleles to improve pollen fertility of indica-japonica hybrids in rice (Oryza sativa L.).	Euphytica	113	101-107.	2000	GA14	ga14
5014		Kageyama, Y., Fukuoka, H., Yamamoto, K. and Takeda, G.	The rice plant bearing endospermless grains: A novel mutant nduced by gamma-irradiation of tetraploid rice (Oryza sativa L.).	Japan. J. Breed.	41	341-345.	1991	ENL1	enl1
5018		Takahashi, M., N. Nagasawa, H. Kitano and Y. Nagato	Panicle phytomer 1 mutations affect the panicle architecture of rice.	Theor. Appl. Genet.	96	1050-1056.	1998	PAP1,DN3,FON1	pap1,dn3,OsFON1, fon1, OsRLCK219, RLCK219
5021		Tamura, Y., Kitano, H., Satoh, H. and Nagato, Y.	A gene profoundly affecting shoot organization in the early phase of rice development.	Plant Sci.	82	91-99.	1992	SHO2,SHO1	sho2,sho1, DCL4, OsDCL4, Os DCL4, Dcl4 
5023	10409508	Satoh, N., S-K. Hong, A. Nishimura, M. Matsuoka, H. Kitano, Y. Nagato.	Initiation of shoot apical meristem in rice: characterization of four SHOOTLESS genes.	Development	126	3629-3636.	1999	OSH1,SHL1,SHL3,SHL4,SHL2	OSKN1, Oskn1, OsKN1, OSH1/Oskn1, HB75,shl1, sh1,shl3, sh3,shl4, sh4, OsAGO7, SHO2, AGO7, SHL4/SHO2,shl2, SHL2, sh2, OsRDR6, RDR6
10000		KInoshita, T.	Allelism test between Pl-i and pl2(t) responsible for purple leaf in rice.	RGN	14	52-53	1997	PL2,PL	pl2(t), pl2,Pl, Pl1
10001		Sanchez, A. C. and G. S. Khush	A new gene for virescence character in rice	RGN	15	109	1998	V12	v12(t)
10003		Takahashi, M. and T. Kinoshita	Genic identification on the forms of the tillering dwarf rice. -Genetical studies on rice plant, LIX-.	Res. Bull. Univ. Farm Hokkaido Univ.	19	41-50.	1974	D17,D22,D10,D23,D27,D5,D31,D4,D7,D28,D33,D3,D14	d17(t), dwf14, d17, htd1, OsCCD7, CCD7, D17/HTD1, HTD1, OsHTD1, OsD17,d22(t), dwf19, d22,d10(d15,d16), d16, d15, dwf9, d10, OsCCD8b, OsCCD8, CCD8, OsD10,d23(t), dwf20, d23,d27(d t), dt, dwf23, d27, OsD27,d5, dwf5,d31, dwf27,d4, dwf4,d7, dwf7,d28(d C), dwf24, dC, d28,d33(d B), dB, dwf29, d33,d3, dwf3, D3/OsMAX2, Os_F0760, SOL1, OsORE9, ORE9, MAX2, OsRFPH2-10, RFPH2-10, OsD3,  OsFBL27, FBL27,d14(d10), dwf13, d10, d14, D88, HTD2, OsHTD2, OsD14, qPPB3, D88/D14, HTD4
20001	9108284	Aggarwal, R.K., D.S. Brar and G.S. Khush	Two new genomes in the Oryza complex identified on the basis of molecular divergence analysis using total genomic DNA hybridization.	Mol. Gen. Genet.	254	1-12.	1997		
20002		Ahn, S.N., Y.K. Kim, H.C. Hong, S.S. Han, H.C. Choi, H.P. Moon and S.R. McCouch	Molecular mapping of genes for resistance to Korean isolates of rice blast. In Harmonizing agricultural productivity and conservation of biodiversity Breeding and ecology. 	Proceed. 8th SABRAO Congress and Annual Meeting of Korean Breed. Soc.		435-436.	1997	PI21,PI23,PI22	Pi21(t)*, Pi21, RMg41, Pi-21(t), Pi21(t),Pi23(t)*, Pi23(t), Pi23, RMg43, Pi-23(t),Pi22(t)*, Pi22, RMg42, pi22(t), Pi-22(t)
20004		Albar, L., M. Lorieux, N. Ahmadi, I. Rimbault, A. Pinel, A.A. Sy, D. Fargette and A. Ghesquiere	Genetic basis and mapping of the resistance to rice yellow mottle virus. I. QTLs identification and relationship between resistance and plant morphology.	Theor. Appl. Genet.	97	1145-1154.	1998		
20005	9097041	Antonio, B.A., M. Emoto, J. Wu, I. Ashikawa, Y. Umehara, N. Kurata and T. Sasaki	Physical mapping of rice chromosomes 8 and 9 with YAC clones.	DNA Res.	3	393-400.	1996		
20006		Aoki, T., N. Kameya and I. Nakamura	A cDNA clone from rice accelerated overgrowth (ao) mutant encoding xyloglucan-related protein homolog.	RGN	14	133-136.	1997	AO	ao
20007		Asai, K., H. Satoh, H. Kitano and Y. Nagato	MORI1 gene regulates juvenile-adult phase change in rice.	Breeding Science	48(Suppl. 1)	229	1998	MORI1	mori1
20008		Ashikari, M., S. Saji, Y. Umehara, T. Matsumoto, M. Yano, T. Sasaki, A. Yoshimura and N. Iwata	Physical mapping around d-1 gene in rice.	Breeding Science	47(Suppl. 2)	192	1997	D1	d1, GPA1, GA1, OsGA1, RGA1, dwf1, XA7, RGA, D1/RGA1, D89, TGW5, OsTGW5, SRG5, OsSRG5
20009		Ashikari, M., A. Yoshimura, T. Matsumoto, M. Yang, T. Sasaki and N. Iwata	Identification of a YAC clone carrying d1 locus in rice.	Breeding Science	48(Suppl. 1)	76	1998		
20010		Ashikari, M., J. Wu, M. Yano, T. Sasaki and A. Yoshimura	Map-based cloning of rice Dwarf1 gene.	Breeding Science	48(Suppl. 2)	70	1998	D1	d1, GPA1, GA1, OsGA1, RGA1, dwf1, XA7, RGA, D1/RGA1, D89, TGW5, OsTGW5, SRG5, OsSRG5
20011		Ayres, N.M., A.M. McClung, P.D. Larkin, H.F.J. Bligh, C.A. Jones and W.D. Park	Microsatellites and a single-nucleotide polymorphism differentiate apparent amylose classes in an extended pedigree of US rice germ plasm.	Theor. Appl. Genet.	94	773-781.	1997	WX1	wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx
20012		Baileg, P.C., R.S. McKibbin, J.R. Lenton,  M.J. Holdsworth, J.E. Fintham, and M.D. Gale	Genetic map locations for orthologous Vp1 genes in wheat and rice.	Theor. Appl. Genet.	98	281-284.	1999		
20013		Bharaj, T.S., S.S. Virmani and G.S. Khush	Chromosomal location of fertility restoring genes for 'wild abortive' cytoplasmic male sterility using primary trisomics in rice.	Euphytica	83	169-173.	1995	RF6,RF4	Rf6(t),Rf6(t)*, Rf5, Rf6,Rf4* (R1, Rf1), R1, Rf1, RfWA1, Rf4
20014		Bi, X.Z., Y.H. Xiao and Y.B. Tao	Leaf proteins of PGMR during photoperiod-sensitive stage of fertility transformation.	RGN	14	87-90.	1997		
20015		Blair, M.W. and S.R. McCouch	Microsatellite and sequence-tagged site markers diagnostic for the rice bacterial leaf blight resistance gene xa-5.	Theor. Appl. Genet.	95	174-184.	1997	XA5	xa5, xa-5, Xa5, TFIIAy, OsTFIIAgamma5, TFIIAgamma5, OsTFIIAgamma5/Xa5
20017		Butany, W.T. and R.L.M. Ghose	Genetics of rice I. The inheritance of anthocyanin pigment in the leaf blade of rice (Oryza sativa L.).	Oryza Cuttack	2(1)	45-56.	1965		
20018		Cai, H.W. and H. Morishima	New storage protein genes detected by Acidic Formate-PAGE method.	RGN	14	76-78.	1997		
20019		Champoux, M.C., G. Wang, S. Sarkarung, D.J. Mackill, J.C. O'Toole, N. Huang, and S.R. McCouch	Locating genes associated with root morphology and drought avoidance in rice via linkage to molecular markers.	Theor. Appl. Genet.	90	969-981.	1995		
20020		Chen, D., G.L. Wang and P.C. Ronald	Location of the rice blast resistance locus Pi5(t) in Moroberekan by AFLP bulk segregant analysis.	RGN	14	95-98.	1997	PI5-2,PI3	Pi3, Pi5, Pi-3(t), Pi-3, Pi3(t), Pi5(t), Pi5-2, Pii,  RMg22, RMg21,Pi3, Pi5, Pi-3(t), Pi-3, Pi3(t), Pi5(t), Pi5-1, Pii,  RMg22, RMg21
20021		Chen, D.H., M.dela Vina, T. Inukai, D.J. Mackill, P.C. Ronald and R.J. Nelson	Molecular mapping of the blast resistance gene, Pi44(t) in a line derived from a durably resistant rice cultivar.	Theor. Appl. Genet.	98	1046-1053.	1999	PI44,PIIS1	Pi44(t)*, Pi44(t), Pi44, Pi-44(t),Pi is1(Rb4), Rb4, Rb-4, Piis1, Pi-is-1
20022		Chen, X., S. Temnykh, Y. Xu, Y.G. Cho and S.R. McCouch	Development of a microsatellite framework map providing genome-wide coverage in rice   (Oryza sativa L.).	Theor. Appl. Genet.	95	553-567.	1997		
20023		Cho, Y.G., S.R. McCouch, M. Kuiper, M.-R. Kang, J. Pot, J.T.M Groenen and M.Y. Eum	Integrated map of AFLP, SSLP and RFLP markers using a recombinant inbred population of rice (Oryza sativa L.).	Theor. Appl. Genet.	97	370-380.	1998		
20024		Coh, Y.G., S.R. McCouch, M. Kuiper, M.R. Kang, J. Pot, J.TM. Groenen and M.Y. Eun	Integration of AFLP markers into an RFLP and SSLP map of rice (Oryza sativa L.).	RGN	14	106-109.	1997		
20026	9291955	Devos, K.M. and M.D. Gale	Comparative genetics in the grasses.	Plant Mol. Biol.	35	3-15.	1997		
20027		Devos, K.M., Z.M. Wang, J. Beales, T. Sasaki and M.D. Gale	Comparative genetic maps of foxtail millet (Setaria italica) and rice (Oryza sativa).	Theor. Appl. Genet.	96	63-68.	1998		
20028		Dhulappanavar, C.V.	Linkage studies in rice (Oryza sativa L.).	Euphytica	22	555-561.	1973		
20029		Dhulappanavar, C.V.	A pleiotropic inhibitory gene in rice (Oryza sativa L.).	Indian J. Agr. Sci.	43	848-851.	1973		
20030	4781375	Dhulappanavar, C.V.	The inheritance of pigmentation in certain plant parts of rice.	Can. J. Genet. Cytol.	15	867-870.	1973		
20031		Dhulappanavar, C.V.	Differential expression of a pleiotropic gene for flowering in rice.	Riso	24	287-292.	1975		
20032		Dhulappanavar, C.V.	Inheritance of pigmentation in rice (Oryza sativa L.)ligule, axil, stigma, and apiculus.	Genetica Iberica	28	295-304.	1976		
20033		Dhulappanavar, C.V.	A.linkage group in rice (Oryza sativa L.) involving anti-inhibitory genes.	Euphytica	26	427-432.	1977		
20034		Dhulappanavar, C.V., A.K. Kolhe and R. D'cruz	Inheritance of pigmentation of rice.	Indian J. Genet. & Plant Breed.	33(2)	176-179.	1973		
20035		Dhulappanavar, C.V., A.K. Kolhe and R. D'cruz	Inheritance of pigmentation in rice III. Auricle, junctura, pulvinus and leaf axil.	Indian J. Genet. & Plant Breed.	33(3)	389-392.	1973		
20036		Dhulappanavar, C.V., S.R. Hiremath and G.P. Sathyavathi	Linkage between a basic gene for anthocyanin pigmentation and a complementary gene for purple septum in rice (Oryza sativa L.).	Euphytica	24	633-638.	1975		
20037		Ding, H., G. Zhang, Y. Guo, S. Chen and S. Chen	RAPD tagging of a salt tolerance gene in rice.	In Application of DNA based marker mutations for improvement of cereals and other sexually reproduced crop plants. IAEA. TECDOC.	1010	63-66.	1998	SALT2	SalT2*(P), P, SalT2*, Sal2
20038	0	Doi, K., N. Iwata and A. Yoshimura	The construction of chromosome substitution lines of African rice (Oryza glaberrima Steud.)in the background of Japonica rice (O. sativa L.).	RGN	14	39-40.	1997		
20039		Doi, K., A. Yoshimura and N. Iwata	RFLP mapping and QTL analysis of heading date and pollen sterility using backross population between Oryza sativa L.and Oryza glaberrima Steud.	Breeding Science	48	395-399.	1998		
20040		Doi, K., K. Taguchi and A. Yoshimura	Construction and evaluation of Oryza glaberrima Steud.chromosome substitution lines of rice. -RFLP mapping of loci for heading date and hybrid sterility located on chromosome 10-.	Breeding Science	48(Suppl. 2)	104	1998		
20041	7651833	Dunford, R.P., N. Kurata, D.A. Laurie, T.A. Money, Y. Minobe and G. Moore	Conservation of fine-scale DNA marker order in the genomes of rice and the Triticeae.	Nucleic Acids Res.	23	2724-2728.	1995		
20042		Dung, L.V. and Y. Sano	Possible wide distribution of a photosensitivity gene, se-pat(t), in wild and cultivated rice.	RGN	14	72-73.	1997	SEPAT	se-pat(t), sepat(t)*(se), sepat(t)*
20043		Eguchi, T., M. Ashikari, A. Yoshimura and N. Iwata	Loci of physiological and morphological characters on RFLP linkage map in rice.	Breeding Science	48(Suppl. 1)	80	1998	V1,V7,DRP4,DRP5,FGL,BC1,NAL1,DU1	v1, NUS1,OsV1, OsNUS1,v7,drp4,drp5,fgl(fl), fl, fgl, OsFGL, OsPorB, PoPA, PORA, porA, OsPORA, PORB, OsPORB,bc1, bc-1, OsBC1, CWA1, FP1, OsPCS3, PCS3,nal1, cul1, GPS, SPIKE, SPIKE/LSCHL4/NAL1/GPS, SPIKE/NAL1, LSCHL4, OsNAL1,du1
20044		Endo, N., M. Akiyoshi and T. Ogawa	Resistance to Japanese races of rice bacterial blight in Vietnamese cultivars.	Breeding Science	47(Suppl. 2)	128	1997		
20045		Fujii, K., Y. Hayano-Saito, N. Sugiura, T. Kato, T. Izawa, M. Inoue and M. Iwasaki	Relationship between the difference in panicle blast resistance among line groups of Aichi 21', a rice stripe resistant line and their graphical genotypes on short arm part of chromosome 11.	Breeding Science	47(Suppl. 2)	130	1997	PBST*	Pbst*
20046		Fujii, K., A. Shumiya, N. Sugiura, T. Izawa, M. Inoue and T. Ito	Characteristics and durability of a panicle blast resistance gene Pb-st(t), originated from a rice parental line St.No.1.	Breeding Science	48(Suppl. 1)	282	1998		
20047		Fukui, K. and N. Ohmido	Rice genome research: an alternative approach based on molecular cytology.	In Genomes (J.P. Gustafson ed.), Plenum Press, New York.		109-121	2000		
20048		Fukui, K., R. Shishido and T. Kinoshita	Identification of the rice D-genome chromosomes by genomic in situ hybridization.	Theor. Appl. Genet.	95	1239-1245.	1997		
20050		Fukuoka, S. and K. Okuno	RFLP mapping of complementary genes for hybrid breakdown in cultivated rice.	RGN	14	99-102.	1997		
20051		Fukuoka, S., K. Okuno, M. Kawase, K. Miura and S. Kiyosawa	Genes controlling field resistance to blast in Japanese upland rice detected using RFLP markers.	IRRN	21(2-3)	50-51.	1996		
20052		Fukuoka, S., H. Namai and K. Okuno	Geographical variation of the genes controlling hybrid breakdown and genetic differentiation of the chromosomal regions harboring these genes in Asian cultivated rice, Oryza sativa L.	Genes Genet. Syst.	73	211-217.	1998		
20054		Fukuoka, S., H. Namai and K. Okuno	Selective RFLP markers for genotypes at the hwd2 responsible for hybrid breakdown in rice.	Breeding Science	48(Suppl. 1)	313	1998		
20055		Fukuta, Y.	Genetic and breeding analysis of shattering habit using the resistant mutant lines in rice (Oryza sativa L.).	Bull. Hokuriku Natl. Agric. Exp. Stn.	37	67-105.	1995	SH2,SH4,SH1	sh2,sh4, sh4(t)*(sh3), sh3, sh4,sh1
20056		Fukuta, Y. and T. Yagi	Mapping of a shattering resistance gene in a mutant line SR-5 induced from an indica rice variety, Nan-jing 11.	Breeding Science	48	345-348.	1998	SH4	sh4, sh4(t)*(sh3), sh3, sh4
20057		Fukuta, Y., H. Yoshida, K. Fukui and A. Kobayashi	Analysis of shattering degree and abscission layer development in shattering-resistant mutant lines induced from an indica rice (Oryza sativa L.) variety, Nan-jing 11.	Breeding Science	44	195-200.	1994		
20058		Fukuta, Y., S. Oya, K. Tamura, M. Hirae, I. Ashikawa and T. Yagi	Genetic and breeding analysis using molecular marker 8.Development of near-isogenic lines of resistant to green rice leafhopper (Nephotettix cincticeps UHLER) by the marker assisted selection using RFLP markers in rice (Oryza sativa L.).	Breeding Science	47(Suppl. 2)	166	1997		
20059		Fukuta, Y., K. Tamura, M. Hirae and S. Oya	Genetic analysis of resistance to green rice leafhopper (Nephotettix cincticeps UHLER) in rice parental line, Norin-PL6, using RFLP markers.	Breeding Science	48	243-249.	1998	GRH4	Grh4
20060		Futsuhara, Y. and F. Kikuchi	II. Chapter 2-2. Dwarf characters. -1. Inheritance of dwarfism.	In Science of the Rice Plant. v. 3. Genetics. T. Matsuo et al. eds. Nobunkyo, Tokyo.		300-308.	1997		
20061	9729767	Gallego, F., C. Feuillet, M. Messmer, A. Penger, A. Graner, M. Yano, T. Sasaki and B. Keller	Comparative mapping of the two wheat leaf rust resistance loci Lr1 and Lr10 in rice and barley,	Genome	41	328-336.	1998		
20062		Ghesquiere, A., M. Lorieux, E. Roumen, L. Albar and D. Fargette	Indica/japonica doubled haploid population as a model for mapping rice yellow mottle virus and blast resistance genes.	IRRN	21(2-3)	47-49.	1996		
20063		Hao, Z.B. and M. Ichii	A laternal root-deficient mutant RM109 screened for 2,4-D resistance in rice.	Breeding Science	47(Suppl. 2)	243	1997	LRT1	Lrt1*, Lrt1, Lrt 1
20064		Hao, Z.B. and M. Ichii	The auxin-resistant mutant of rice with altered lateral root initiation.In Harmonizing agricultural productivity and conservation of biodiversity Breeding and ecology.In Harmonizing agricultural productivity and conservation of biodiversity Breeding and ecology. 	Proceed. 8th SABRAO Congress and Annual Meeting of Korean Breed. Soc.		299-300.	1997	LRT2,LRT1	CYC2, cyc2*, cyc2, OsCYP2, Cyp2, OsCYP19-2, CYP19-2, OsCYP-2, OsCyp2-P, OsCyp2, OsCYP19-1, LRT2/OsCYP2, lrt2*, lrt2, Ppcti ,Lrt1*, Lrt1, Lrt 1
20065	9475757	Harushima, Y., M. Yano, A. Shomura, M. Sato, T. Shimano, Y. Kuboki, T. Yamamoto, S.Y. Lin, B.A. Antonio, A. Parco, H. Kajiya, N. Huang, K. Yamamoto, Y. Nagamura, N. Kurata, G.S. Khush and T. Sasaki	A high-density rice genetic linkage map with 2275 markers using a single F2 population.	Genetics	148	479-494.	1998		
20066		Hashimoto, N., K. Higuchi, M. Koiwa, K. Yasuda and M. Daigen	Selection of individual having Pi-z, the rice blast true resistance gene, using RFLP markers in resistance sensitive cross progeny.	Breeding Science	48(Suppl. 2)	109	1998	PIZ	Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2
20067		Kishimoto, N., H. Honda, K.I. Higo and H. Shimada	RFLP mapping of a rice NADP-malic enzyme gene Close linkage with a PEPCase gene on rice chromosome 1.	RGN	14	104-106.	1997	XGRPEPC,MAL1,NADP-ME1	XgrPepc*, XgrPepc,Mal1, Mal I, Mal-I, Mal-1,NADP-ME, ME6, OschlME, chlME, XcrMal1
20068		Kitano, H. and Y. Futsuhara	Character expression of induced dwarf mutants in rice. I. Effects of temperatures on culm elongation in the dwarf mutant line, Fukei 71.	Japan. J. Breed.	31	9-18.	1981		
20070		Hayano-Saito, Y., K. Fujii, T. Toyama, K. Saito, T. Izawa and M. Iwasaki	A molecular marker closely linked to rice stripe resistance gene, Stv-bi.	Breeding Science	47(Suppl. 2)	164	1997	STVB	Stvb(St2), St2, Stvb, Stv2
20071		Hayano-Saito, Y., T. Tsuji, K. Fujii, K. Saito, M. Iwasaki and A. Saito	Localization of the rice stripe disease resistance gene, Stv-bi, by graphical genotyping and linkage analyses with molecular markers.	Theor. Appl. Genet.	96	1044-1049.	1998	STVB	Stvb(St2), St2, Stvb, Stv2
20072		Hayano-Saito, Y., K. Saito, S. Kawasaki and M. Iwasaki	Towards map-based cloning of rice stripe disease resistance gene, Stbi.	Recent Advances in Breeding	40	77-80.	1998	STVB	Stvb(St2), St2, Stvb, Stv2
20073		Hayashi, H. and I. Takamure	Character expression of d-11 (norin 28 dwarf) showing dm type of interenode elongation habit in rice.	Breeding Science	47(Suppl. 2)	229	1997		
20074		He, P., L. Shen, C. Lu, Y. Chen and L. Zhu	Analysis of quantitative trait loci which contribute to anther culturability in rice (Oryza sativa L.).	Molecular Breeding	4	165-172.	1998		
20076		Hirabayashi, H., R. Kaji, T. Ogawa, D.S. Brar, A.R. Angeles and G.S. Khush	Mapping of a new introgression gene for brown planthopper (BPH) resistance from O.officinalis using RFLP markers in rice. In Harmonizing agricultural productivity and conservation of biodiversity Breeding and ecology.	Proceed. 8th SABRAO Congress and Annual Meeting of Korean Breed. Soc.		401-402.	1997	BPH12,BPH11	bph12,bph11
20077	9291976	Hirochika, H.	Retrotransposons of rice their regulation and use for genome analysis.	Plant Mol. Biol.	35	231-240.	1997	TOS17	Tos17, Osr21, Tos17chr10, Tos17_Chr10, Tos17chr7, Tos17_Chr7
20078		Hoan, N.T., N.P. Sarma and E.A. Siddiq	Identification and characterization of new sources of cytoplasmic male sterility in rice.	Plant Breeding	116	547-551.	1997	[CMS-DRW21018],[CMS-DRW21030],[CMS-VN1],[CMS-DRW21039]	[cms-DRW21018]*, [cms-DRW21018],[cms-DRW21030]*, [cms-DRW21030],[cms-VN1]*, [cms-VN1],[cms-DRW21039]*, [cms-DRW21039]
20079	9291966	Hong, G.	A rapid and accurate strategy for rice contig map construction by combination of fingerprinting and hybridization.	Plant Mol. Biol.	35	129-133.	1997		
20080		Horibata, A., A. Kawahara and H. Yamagata	Pleiotropic effects of the slender-glume (slg) on morphological and physiological characters in rice.	Breeding Science	47(Suppl. 2)	242	1997	SLG	slg, Rurm1, Urm1, OsSUMO7, SUMO7
20081	7914758	Huang, H. and G. Kochert	Comparative RFLP mapping of an allotetraploid wild rice species (Oryza latifolia) and cultivated rice (O.sativa).	Plant Mol. Biol.	25	633-648.	1994		
20082		Huang, N., A. Parco, T. Mew, G. Magpantay, S. McCouch, E. Guiderdoni, J. Xu, P. Subudhi, E.R. Angeles and G.S. Khush	RFLP mapping of isozymes, RAPD and QTLs for grain shape, brown planthopper resistance in a doubled haploid rice population.	Molecular Breeding	3	105-113.	1997	XA13	xa13, Xa13, Os8N3, Os-8N3, 8N3, OsSWEET11, SWEET11, OsSWEET11/Xa13, Xa13/Os8N3/SWEET11, Os8N3/Xa13, OsSWEET11/Os8N3, OsSWEET11a, SWEET11a
20083		Huang, N., E.R. Angeles, J. Domingo, G. Magpantay, S. Singh, G. Zhang, N. Kumaravadivel, J. Bennett and G.S. Khush	Pyramiding of bacterial blight resistance genes in rice marker-assisted selection using RFLP and PCR.	Theor. Appl. Genet.	95	313-320.	1997	XA21,XA4,XA5,XA13	Xa21*, Xa21, OsXA21,Xa4, Xa4(Xa4a), Xa-4, Xa4-a, WAK, wak, xa4,xa5, xa-5, Xa5, TFIIAy, OsTFIIAgamma5, TFIIAgamma5, OsTFIIAgamma5/Xa5,xa13, Xa13, Os8N3, Os-8N3, 8N3, OsSWEET11, SWEET11, OsSWEET11/Xa13, Xa13/Os8N3/SWEET11, Os8N3/Xa13, OsSWEET11/Os8N3, OsSWEET11a, SWEET11a
20084	9484474	Hwang, Y.-S., E.E. Karrer, B.R. Thomas, L. Chen and R.L. Rodriguez	Three cis-elements required for rice alpha-amylase Amy3D expression during sugar starvation.	Plant Mol. Biol.	36	331-341.	1998	AMY3D,AMY3E	Amy3D/E*(RAmy3D/E), alpha Amy3, AmyII-4, AMY1.3, Amy3D, Amy3D/E*, RAmy3D/E, Amy3D_E, Amy8, aAmy3, RAmy3D, OsAmy3D, alphaAmy3, OsRamy3D,Amy3D/E*(RAmy3D/E), alpha Amy8, alphaAmy8, AmyII-3, AMY1.4, Amy3E, Amy3D/E*, RAmy3D/E, Amy9, RAmy3E, alphaAmy8-C, AMY3E/AMY1.4, OsAmy3E, OsRamy3E
20085		Ichikawa, N., N. Kishimoto, A. Inagaki, A. Nakamura, Y. Koshino, Y. Yokozeki, M. Oka, S. Samoto, H. Akagi, K. Higo, C. Shinjyo, T. Fujimura and H. Shimada	A rapid PCR-aided selection of a rice line containing the Rf-1 gene which is involved in restoration of the cytoplasmic male sterility.	Molecular Breeding	3	195-202.	1997	RF1	Rf1 (Rf-1), rf-1, PPR791, PPR8-1, Rf-1, Rf1, Rf-1A, Rf5, Rf1a, RF5, Rf5(t)*(Rf(t)*), RF1A, PPR6, PLS31, OsPLS31
20086		Ichitani, K., Y. Okumoto and T. Tanisaka	Genetic analysis of the rice cultivar Kasalath with special reference to two photoperiod sensitivity loci, E1 and Se-1.	Breeding Science	48	51-57.	1998	SE9,SE1,E1	Se9,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, OsHd1,  Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,E1 (=m Ef1+), mEf1+, Hd4(t), m Ef1-a, m Ef1-b
20087		Iida, S., K. Miyahara and T. Nishio	Rice mutant lines lacking alpha-globulin.	Breeding Science	48	45-49.	1998	GLB1	glb1(t)*, glb1(t), glb1, alpha-Glb, Glb-1, OsGlb1, Glb1, Glb, OsEnS-77
20088		Iida, Y., H. Ohtsubo and E. Ohtsubo	Identifying transposonlike element Tnr2 in rice.	IRRN	21(2-3)	29-30.	1996		
20089		Ikeda, K., H. Furuumi, A. Yoshimura, H. Yasui and N. Iwata	Acrotrisomics in rice.	IRRN	21(2-3)	15-16.	1996		
20090		Imbe, T., S. Oba, M.J.T. Yanoria and H. Tsunematsu	A new gene for blast resistance in rice cultivar, IR24.	RGN	14	60-62.	1997	PIK,PI20,PIB	Pik, RMg8, Pi-k, Pik-2, Pik-1, Pik1, Pik2, Pik-H4, Pikp-1, Pikh-1, Pik1-H4, Pikh-2, Pik2-H4,Pi20, Pi20(t),Pi b(Pi s), Pis, Pib, Pi-s, Pi-hy
20091		Inoue, H., H. Nishida, Y. Okumoto and T. Tanisaka	Identification of an early heading time gene found in the Taiwanese rice cultivar Taichung 65.	Breeding Science	48	103-108.	1998	EF1,SE1,PIZT,PIZ	Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, OsHd1,  Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,Piz-t, Pi-zt, Pi-z(t), Pi2/Pizt, Pizt, Pi9, OsPiz-t,Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2
20092		Inoue, T., H. S. Zhong, A. Miyao, I. Ashikawa, L. Monna, S. Fukuoka, N. Miyadera, Y. Nagamura, N. Kurata, T. Sasaki and Y. Minobe	Sequence-tagged sites (STSs) as standard landmarkers in the rice genome.	Theor. Appl. Genet.	89	728-734.	1994		
20093		International Rice Research Institute	Rice Genetics and Cytogentics.	Proceed. Symp. Rice Genet.  Cytogenet. (1963). Elsevier, Amsterdam.		1-274.	1964		
20094		International Rice Research Institute	Rice Genetics.	Proceed. the First International Rice Genetics Symposium (1985). Manila, Philippines.		1-932.	1986		
20095		International Rice Research Institute	Rice Genetics II.	Proceed. the Second International Rice Genetics Symposium (1990). Manila, Philippines.		1-844.	1991		
20096		International Rice Research Institute 	Rice Genetics III.	Proceed. the Third International Rice Genetics Symposium (1995). G. S. Khush, ed.  Manila, Philippines.		1-1011.	1996		
20097		Inukai, T., A. Sako, Y. Kishima and Y. Sano	Intragenic recombination at the wx locus in rice.	Breeding Science	48(Suppl. 1)	15	1998	RAL2,CRL1,RAL1,WX1,CRL2	ral2*, ral2,crl1, crl1*, ARL1, ARL1/CRL1, OsLBD3-2, LBD3-2, OsCRL1,ral1*, ral1,wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx,crl2*, crl2
20098		Ishikawa, R. and M. Freeling	Mutator-like transposase domain found in rice genome.	Proceed. 5th Intern. Symp. on Rice Molecular Biology. Academia Sinica, Taipei, Taiwan.		133-139.	1997	RMU1-IR36*	RMu1-IR36*, RMu1-IR36
20099		Ishikawa, R., Y. Harata, Y. Tuchimine, M. Senda, S. Akada, T. Harada and M. Niizeki	Complex constitutive nature of Japanese upland rice, Oryza sativa L.	Euphytica	98	197-203.	1997		
20100		Isshiki, M., M. Nakajima, H. Satoh and K. Shimamoto	Analysis of dull tissue-specific mutants affecting splicing of Wxb transcripts.	Breeding Science	48(Suppl. 2)	43	1998	DU1,DU2	du1,du2
20101		Itoh, J.I., A. Hasegawa, H. Kitano and Y. Nagato	A gene associated with temporal regulation of vegetative development in rice.	RGN	14	141-144.	1997	PLA1	pla1, OsPLA1, plt1, CYP78A11
20102		Itoh, J., H. Kitano and Y. Nagato	Analysis of leaf development in rice using shoot organization mutant.	Breeding Science	48(Suppl. 2)	296	1998		
20103	9267430	Itoh, K., M. Nakajima and K. Shimamoto	Silencing of waxy genes in rice containing Wx transgenes.	Mol. Gen. Genet.	255	351-358.	1997	WX1	wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx
20104		Itoh, Y., S. Shibata and I. Takamure	Expression of twisted leaf blade in  rice-its relation to the developmental phase change.	Breeding Science	48(Suppl. 1)	231	1998		
20105	9291975	Izawa, T., T. Ohnishi, T. Nakano, N. Ishida, H. Enoki, H. Hashimoto, K. Itoh, R. Terada, Ch. Wu, Ch. Miyazaki, T. Endo, S. Iida and K. Shimamoto	Transposon tagging in rice.	Plant Mol. Biol.	35	219-229.	1997		
20106		Jeon, Y.-H., S.-N. Ahn, H.-C. Choi, T.-R. Hahn and H.-P. Moon	Molecular mapping of gene for brown planthopper resistance in rice (Oryza sativa L.). In Harmonizing agricultural productivity and conservation of biodiversity Breeding and ecology.	Proceed. 8th SABRAO Congress and Annual Meeting of Korean Breed. Soc.		423-424.	1997	BPH1	Bph1
20107	7753830	Jiang, J., B.S. Gill, G.-L. Wang, P.C. Ronald and D.C. Ward	Metaphase and interphase fluorescence in situ hybridization mapping of the rice genome with bacterial artificial chromosomes.	Proc. Natl. Acad. Sci. U.S.A.	92	4487-4491.	1995	XA21	Xa21*, Xa21, OsXA21
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20111		Kadam, B.S., D.S. Ghorpade and J.S. Desale	Genic analysis in rice-IV.	Indian J. Genet. & Plant Breed.	40	354-365.	1980		
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20113		Kaku, H.	The dosage effect of bacterial blight resistance genes Xa1 and Xa3 in rice.	RGN	14	64-67.	1997	XA1	Xa1(Xe), Xe, Xa1, Xa-1
20114		Kamijima, O.	Some considerations on the mechanism of expression of dwarfing genes in rice plants. Responses to gibberellic acid and the presence of endogenous gibberellin-like substances in rice plants.	Sci. Rept. Fac. Agri. Kobe Univ.	10	177-182.	1972		
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20128	9862503	Kisaka, H., M. Kisaka, H-Y. Lee and T. Kameya	Isolation of a cDNA for tryptophan synthase beta from rice and studies of its expression in a 5-methyltryptophan-resistant mutant of rice.	Plant Mol. Biol.	38	875-878.	1998		
20129		Kishima, Y. and Y. Sano	Structural characterization based on the physical map of the rice BAC clones and its applications.	Recent Advances in Breeding	40	69-72.	1998	WX1	wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx
20130		Kiyosawa, S. and I. Ando	II. Chapter 4-1.Inheritance of disease resistance. -1. Blast diseases resistance.	In Science of the Rice Plant. v. 3. Genetics. T. Matsuo et al. eds. Nobunkyo, Tokyo.		470-500.	1997		
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20132		Kobayashi, S. and Y. Sano	Developmental and genetical study of cross-incompatibility in rice.	Breeding Science	47(Suppl. 2)	216	1997	SUCIF,CIF1	SuCinf*, SUCINF, Su-Cif, Su Cinf,Cinf(t)*(Lcr), cinf(t), Cif, Lcr, Cinf
20134		Koh. H.J. and M.H. Heu	A new dominant dwarfing gene in rice.	RGN	10	77-79.	1993	DH	D-h(t)*, Dwf43, D-h
20135		Koh. H.J. and M.H. Heu	A new dominant dwarf-gene development by mutathion in rice.	Korean J. Breed.	26(4)	368-374.	1994		
20136		Koh. H.J. and M.H. Heu	Physicocemical properites of sugary-endosperm mutants in rice.	Korean J. Crop. Sci.	39(1)	1-6.	1994		
20137		Koh, H.J. and M.H. Heu	Some mutants for grain quality in rice. In Harmonizing agricultural productivity and conservation of biodiversity Breeding and ecology.	Proceed. 8th SABRAO Congress and Annual Meeting of Korean Breed. Soc.		119-120.	1997		
20138		Koh, H.J., S.Z. Park, Y.J. Won and M.H. Heu	Nutritional and agronomic characteristics of super-giant embryo mutant in rice.	Korean J. Crop. Sci.	38(6)	537-544.	1993		
20139		Koh, H.J., K.W. Cha and M.H. Heu	Inheritance and some physicochemical properites of newly induced low-amylose endosperm mutants in rice.	Korean J. Breed.	29(3)	368-375.	1997	DU6B,DU7,DU6A	du6b(t)*, du6b, du7,Du7(t)*, Du7, Du8,du6a(t)*, du6, du6a
20140		Koh, H.J., Y.H. Son, M.H. Heu, H.S. Lee and S.R. McCouch	Molecular mapping of a new genic male-sterility gene causing chalky endosperm in rice (Oryza sativa L.).	Euphytica	106	57-62	1999		
20141	9179493	Koike, K., K. Yoshino, N. Sue, Y. Umehara, I. Ashikawa, N. Kurata and T. Sasaki	Physical mapping of rice chromosomes 4 and 7 using YAC clones.	DNA Res.	4	27-33.	1997		
20142	9291964	Kurata, N., Y. Umehara, H. Tanoue and T. Sasaki	Physical mapping of the rice genome with YAC clones.	Plant Mol. Biol.	35	101-113.	1997		
20143		Kuroki, M. and T. Tanisaka	Semidwarfing genes widely deployed among Japanese rice cultivars.	Breeding Science	47(Suppl. 2)	194	1997	SD9,SD10	sd9(t), sd9, sd(t)*,sd10(t)*, sd10(t), sd10
20144		Lang, N.T., P.K. Subudhi, S.S. Virmani, N. Huang and D.S. Brar	Development of PCR-based markers for thermosensitive genetic male sterility gene, tms3(t) in rice.	RGN	14	102-103.	1997	TMS3	tms3(t)*, ms82
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20146		Li, H.B., J. Wang, A.M. Liu, K.D. Liu, Q. Zhang and J.S. Zou	Genetic basis of low-temperature-sensitive sterility in indica-japonica hybrids of rice as determined by RFLP analysis.	Theor. Appl. Genet.	95	1092-1097.	1997	STE3,STE1,STE2	ste3,ste1,ste2
20147		Li, R., C.G. Xu, Z.Y. Yang and S.K. Wang	The extent of parental genotypic divergence determines maximal heterosis by increasing fertility in inter-subspecific hybrids of rice (Oryza sativa L.).	Molecular Breeding	4	205-214.	1998	TA1	Ta1*, Ta1
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20149		Liang, Z. and M. Ichii	Red purple color expression and its inheritance of root in rice (Oryza sativa L.).	Breeding Science	48(Suppl. 1)	247	1998	PRT	Prt*, Prt
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20151		Lin, H.X., T. Sasaki and M. Yano	Epistatic interaction in the expression between photoperiod sensitivity genes, Hd-2 and Hd-3, in rice.	Breeding Science	48(Suppl. 2)	85	1998		
20152		Kojima, S., L. Monna. T. Fuse, T. Baba, T, Sasaki and M. Yano	Fine-scale genetic linkage map and physical mapping of a rice photoperiod sensitivitiy gene, Hd-3.	Breeding Science	48(Suppl. 2)	96	1998	HD3A	Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a 
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20156		Kubo, A., Y. Nakamura, K. Harada, T. Matsuda and H. Satoh	Alteration of amylopectin fine structure in endosperms of sugary-1 mutants of rice.	Breeding Science	48(Suppl. 1)	163	1998		
20157		Kubo, T. and A. Yoshimura	Linkage analysis of hybrid weakness in rice.	Breeding Science	48(Suppl. 1)	81	1998	HWE1	hwe1(t)*, hwe1, OsHWE1, OsEAF6/HWE1, OsEAF6, EAF6, HWS2, OsHWS2
20158		Kumamaru, T. and H. Satoh	Mapping the mutant gene, esp-1, for seed storage protein in rice.	Breeding Science	47(Suppl. 2)	176	1997	ESP1	esp1(rsp1), rsp1, esp1, OsESP1, ESP1/eRF1, eRF1, OseRF1
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20162		Wan, J., T. Nakazaki, K. Kawaura and H. Ikehashi	Identification of marker loci for seed dormancy in rice (Oryza sativa L.).	Crop Sci.	37	1759-1763.	1997		
20163		Wan, J., H. Ikehashi, M. Sakai, N. Horisue and T. Imbe	Linkage analysis of hybrid sterility gene S-7 in rice (Oryza sativa L.).	Breeding Science	48(Suppl. 2)	105	1998	EST9,S17,S7	Est9 (Est c1), Est8, Estcl, Est c1, Est_9,S17(t)*,S7
20164		Yano, M., Y. Harushima, Y. Nagamura, N. Kurata, Y. Minobe and T. Sasaki	Identification of quantitative trait loci controlling heading date in rice using a high-density linkage map.	Theor. Appl. Genet.	95	1025-1032.	1997	HD2,SE1,HD4,HD5,HD3A	Hd2(t), Hd2, qHD2(t), OsPRR37, Os-PRR37, PRR37, Prr4, OsPRR4, DTH7, Os DTH7, OsCCT28, CCT28, Ghd7.1, PRR37/Hd2, EH7-2, EH7-2/Hd2, Hd2/PRR37, PRR37-1a, PRR37-1b, PRR37-1c, PRR37-2a, PRR37- 2, HD7.2,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, OsHd1,  Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,Hd4(t), qHD4(t), qHD4,Hd5(t)*, Hd5, qHD5, HAP3H, OsHAP3H, NF-YB, CBF-A, DTH8 , qHD5(t)*, Ghd8, Ghd8/DTH8, Lhd1, NF-YB11, OsNF-YB11, NFYB11, LH8, DTH8/Ghd8, RH8, DTH8/Ghd8/LHD1, CAR8, DTH8/Ghd8/ OsHAP3H, EF8, OsEF8,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a 
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20168		Lin, S.Y., T. Takashi, M. Yano and T. Sasaki	A pollen sterility gene Ps-1(t) controlling abortion of male gamate in rice.	Breeding Science	48(Suppl. 2)	103	1998		
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20243		Rybka, K., M. Miyamoto, I. Ando, A. Saito and S. Kawasaki	High resolution mapping of the indica-derived rice blast resistance genes II. Pi-ta2 and Pi-ta and a consideration of their origin.	Mol. Plant Microbe Interact.	10	517-524.	1997	PITA	Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30, Trx30
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20245		Saka, N., T. Tsuji and T. Izawa	Allelism tests of green ricehopper resistant gene Grh-3(t) among rice cultivars screened by RFLP markers method.	Breeding Science	48(Suppl. 1)	283	1998		
20246		Sako, A., H. Nagano, T. Inukai and Y. Sano	Molecular characterization of mutations induced by gamma rays and EMS treatments at the rice wx locus.	Breeding Science	48(Suppl. 2)	330	1998	WX1	wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx
20247		Sanchez A.C. and G.S. Khush	A new gene for spreading panicle in rice.	RGN	14	47-48.	1997	SPR4	Spr4(t)*, Spr4(t)
20248		Sanchez A.C. and G.S. Khush	A new gene for white panicle in rice.	RGN	14	49	1997		
20249		Sanchez, A.C. and G.S. Khush	Inheritance and linkage relationships of twenty-one genes in rice, Oryza sativa L..	SABRAO Journal	30(2)	51-60	1998		
20250		Sanchez, A.C., D. Yang, G.S. Khush, Y. Zhu and N. Huang	Construction of overlapping BAC clones for xa5 region of chromosome 5.	RGN	14	118-119.	1997	XA5	xa5, xa-5, Xa5, TFIIAy, OsTFIIAgamma5, TFIIAgamma5, OsTFIIAgamma5/Xa5
20251		Sane, A.P., P. Seth, S.A. Ranade, P. Nath and P.V. Sane	RAPD analysis of isolated mitochondrial DNA reveals heterogeneity in elite wild abortive  (WA) cytoplasm in rice.	Theor. Appl. Genet.	95	1098-1103.	1997	[CMS-WA]	[cms-WA]
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20256		Sato, H. and M. Ichii	A new locus cnx3 involved in molybdenum cofactor biosynthesis in rice (Oryza sativa L.).	Breeding Science	48	123-128.	1998	CNX3,CNX2,CNX1	cnx3*, cnx3, cnx 3,cnx2*, cnx2, cnx 2,cnx1*, cnx1, cnx 1
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20259		Sawamura, N. and Y. Sano	Reconfirmation of gamete killer, S11 in Indica-Japonica hybrid.	Breeding Science	47(Suppl. 2)	79	1997	S11	S11(t)
20260		Sawamura, N. and Y. Sano	Allelic differentiation at the gamete eliminator, S6, in wild and cultivated rice strains.	Breeding Science	48(Suppl. 2)	280	1998		
20261		Seetharaman, R.	Certain considerations on genic analysis and linkage groups in rice.	In Proceed. Symp. Rice Genet. Cytogenet., Internatl. Rice Res. Inst. (1963). Elsevier, Amsterdam.		205-214.	1964		
20262		Shen, Y.W., Z.Q. Guan, J. Lu, J.Y. Zhuang, K.L. Zheng, M.W. Gao and X.M. Wang	Linkage analysis of a fertility restoring mutant generated from CMS rice.	Theor. Appl. Genet.	97	261-266.	1998	RF1	Rf1 (Rf-1), rf-1, PPR791, PPR8-1, Rf-1, Rf1, Rf-1A, Rf5, Rf1a, RF5, Rf5(t)*(Rf(t)*), RF1A, PPR6, PLS31, OsPLS31
20263		Shibata, S., Y. Ito and I. Takamure	Genetic analysis of twisted leaf mutant induced by anther culture in rice.	Breeding Science	47(Suppl. 2)	173	1997	TW	tw(t)*(tl), tl, tw
20264		Shimizu, T., S.Y. Lin, T. Yamamoto, T. Sasaki and M. Yano	Mapping of QTLs controlling elongation of internode length of rice using backcross inbred lines.	Breeding Science	48(Suppl. 2)	83	1998		
20265	9097042	Shimokawa, T., N. Kurata, J. Wu, Y. Umehara, I. Ashikawa and T. Sasaki	Assignment of YAC clones spanning rice chromosomes 10 and 12.	DNA Res.	3	401-406.	1996		
20266		Shishido, R., S. Apisitwanich, N. Ohmido, Y. Okinaka, K. Mori and K. Fukui	Detection of specific chromosome reduction in rice somatic hybrids with the A, B and C genomes by multi-color genomic in situ hybridization.	Theor. Appl. Genet.	97	1013-1018.	1998		
20271		Subudhi, P.K., S. Nandi, C. Casal, S.S. Virmani and N. Huang	Classification of rice germplasm III. High-resolution fingerprinting of cytoplasmic genetic male-sterile (CMS) lines with AFLP.	Theor. Appl. Genet.	96	941-949.	1998		
20272		Sugimoto, K. and Y. Takeoka	Genetic analysis of plant regeneration ability in anther culture of rice (Oryza sativa L.).	Breeding Science	48	115-121.	1998		
20273		Sugimoto, N., G. Takeda, Y. Nagato and J. Yamaguchi	Temporal and spatial expression pattern of rice alpha-amylase gene RAmy1A during seed development.	RGN	14	148-150.	1997	AMY1A,AMY1C	Amy1A/C*(RAmy1A/C), alpha Amy7, AMY1.1, Amy1A, RAmy1A/C, Amy1A/C*, Amy1, Amy1A_C, OsAmy1A, alphaAmy7-C, RAmy1A, AmyI-1, OsAmyI-1, OsRamy1A,Amy1A/C*(RAmy1A/C), alpha Amy10, Amy1C, RAmy1A/C, Amy1A/C*, Amy3, RAmy1C, OsAmy1C, alphaAmy10-C
20274		Sumi, H., S. Irei and S. Sato	Further study on the chromosome carrying an earliness gene Efx in rice.	Breeding Science	48(Suppl. 2)	93	1998	EFX	Efx(t)*, Efx, Ef5(t)*
20275		Suzuki, Y., Y. Iwai, I. Honda and U. Matsukura	Analysis for content of volatiles in stored rice grain from varieties with and without lipoxygenase-3 in seeds.	Breeding Science	48(Suppl. 1)	167	1998	LOX3	Lox3*, lox3(t), LOX-3, Lox3, OsLOX4, LOX4
20276		Tada, Y., K. Sakamoto and H. Akagi	Expression of rice RPR1 and its effect on resistance to disease.	Breeding Science	48(Suppl. 2)	24	1998	RPR1	RPR1*, Rpr1-1, Rpr1, RPM1, OsRPM1, OsRSR1, RSR1
20277		Taguchi-Shiobara, F., S.Y. Lin, K. Tanno, T. Komatsuda, M. Yano, T. Sasaki and S. Oka	Mapping quantitaive trait loci associated with regeneration ability of seed callus in rice, Oryza sativa L.	Theor. Appl. Genet.	95	828-833.	1997		
20278		Takabe, E., S. Kusakabe, H. Satoh, H. Kitano and Y. Nagato	Developmental mutants affect early embryogenesis in rice.	Breeding Science	47(Suppl. 2)	217	1997	CLE1,GLE2,GLE3,EML2,GLE4,GLE1	cle*, cle1,gle2*, gle2,gle3*, gle3,eml2*, eml2,gle4*, gle4,gle1*. gle1
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20282		Takahashi, Y., A. Shomura, M. Sato, M. Yano and T. Sasaki	Linkage map and YAC contig of the chromosomal region containing a rice photoperiod sensitivity gene, Hd-6.	Breeding Science	48(Suppl. 1)	69	1998		
20283		Takamure, I.	Genetic analysis of the minute grain mutant (mik) induced in the rice variety 'Kitaake'. -Genetic interactions between mik and small grain dwarf genes-.	Breeding Science	48(Suppl. 2)	82	1998	MIK	mi k, mik, mi2
20284		Takemoto, Y., M.Y. Son, T. Ito, H. Satoh, T. Kumamaru and M. Ogawa	Genetic and cytochemical analysis of high 57-kD polypeptide mutants in rice.	IRRN	21(2-3)	19-20.	1996	ESP2	esp2(rsp2), rsp2, esp2, PDIL1-1
20285		Takeuchi, Y., S.Y. Lin, T. Sasaki and M. Yano	Estimation of gene effcts of QTLs for seed dormancy in rice using near-isogenic lines.	Breeding Science	48(Suppl. 2)	81	1998	SDR1,SDR2	Sdr1*, Sdr1,Sdr2*, Sdr2
20286		Tamura, K., Y. Fukuta, M. Hirae, S. Oya, I. Ashikawa and T. Yagi	Genetic analysis of the green rice leafhopper (Nephotettix cincticeps Uhler) resistance IV. Localization of the chromosomal regions resistant to green rice leafhopper in Norin-PL5.	Breeding Science	47(Suppl. 2)	167	1997		
20287		Tamura, K., Y. Fukuta, M. Hirae, S. Oya, I. Ashikawa and T. Yagi	RFLP mapping of the green rice leafhopper (Nephotettix cincticeps UHLER) resistant gene in rice Norin-PL2. In Harmonizing agricultural productivity and conservation of biodiversity Breeding and ecology.	Proceed. 8th SABRAO Congress and Annual Meeting of Korean Breed. Soc.		409-410.	1997	GRH1	Grh1
20288		Tamura, K., Y. Fukuta, M. Hirae, S. Oya, I. Ashikawa and T. Yagi	Genetic analysis of the green rice leafhopper (Nephotettix cincticeps UHLER) resistance V. RFLP mapping of the resistant gene in Saikai 182.	Breeding Science	48(Suppl. 2)	108	1998		
20289		Tamura, K., K. Nomura, H. Namai and F. Kikuchi	Determination of the developmental stage in which Se-1 shows remarkable photoperiod sensitivity in rice.	Breeding Science	48(Suppl. 2)	302	1998		
20290		Tan, X.L., A. Vanavichit, S. Amornsilpa and S. Trangoonrung	Genetic analysis of rice CMS-WA fertility restoration based on QTL mapping.	Theor. Appl. Genet.	97	994-999.	1998		
20291		Tanahara, N. and S. Sato	Gene analysis for the uppermost culm diameter in Taichung 65 having a big uppermost culm (Buc) derived from a Japanese rice cultivar, Aikawa 1, and pleiotropic effects of the gene on several traits.	Breeding Science	48(Suppl. 1)	77	1998	BUC	Buc*, Buc
20292		Tang, S.X., G.S. Khush and D.S. Brar	A new null allele at Amp4 locus in a traditional rice cultivar.	RGN	14	75-76.	1997	AMP4	Amp4
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20295		Tao, L., N. Kameya, Y. Fukuta and I. Nakamura	Molecular cloning of OSDIM cDNA and its linkage analysis in rice.	RGN	14	130-133.	1997	DIM*	OsDIM*, OsDIM, DIM, dim, OSDIM
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20299		Tsuchimine, Y., Y. Miyashita, R. Ishikawa, M. Senda, S. Akada, T. Harada and M. Niizeki	Relationship between transposon and mutability caused by hybrid dysgenesis in rice.	RGN	14	129-130.	1997	RMU1	Rmu1*, RMu1
20300		Tsuji, T., N. Saka, T. Tohyama, H. Iwata and T. Izawa	Screening of the RAPD marker by using resistant lines derived from japonica rice parental line, Kanto PL5.	Breeding Science	48(Suppl. 1)	284	1998	BPH2	bph2
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20302		Tsunoda, Y., S. Nakamura, N-S. Jwa, N. Sasaki, Y. Okabe, O. Kodama and S. Kawasaki	Characterization of cDNAs in the region of rice blast resistance gene Pi-b.	Breeding Science	47(Suppl. 2)	7	1997	PIB	Pi b(Pi s), Pis, Pib, Pi-s, Pi-hy
20303		Tsunoda, Y., N.-S. Jwa, T. Motomura, K. Kamihara, S. Nakamura, H. Onodera, M. Ugaki, K. Akiyama, O. Kodama and S. Kawasaki	Trial on screening and identification of the rice blast resistance gene Pi-b due to the complimentation test.	Breeding Science	48(Suppl. 2)	20	1998	PIB	Pi b(Pi s), Pis, Pib, Pi-s, Pi-hy
20304		Tu, J., I. Ona, Q. Zhang, T.W. Mew, G.S. Khush and S.K. Datta	Transgenic rice variety 'IR72' with Xa21 is resistant to bacterial blight.	Theor. Appl. Genet.	97	31-36.	1998	XA21	Xa21*, Xa21, OsXA21
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20307	9426599	Uozu, S., H. Ikehashi, N. Ohmido, H. Ohtsubo, E. Ohtsubo and K. Fukui	Repetitive sequences cause for variation in genome size and chromosome morphology in the genus Oryza.	Plant Mol. Biol.	35	791-799.	1997		
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20312	7757120	Wang, G-L., T.E. Holsten, W-Y. Song, H.-P. Wang and P.C. Ronald	Construction of a rice bacterial artificial chromosome library and identification of clones linked to the Xa-21 disease resistance locus.	Plant J.	7(3)	525-533.	1995		
20313		Wang, G.L., W.Y. Song, L.L. Chen, R. Ruan, S. Sideris and P.C. Ronald	Resistance spectrum, race specificity and expression of the Xa21 gene family.	IRRN	21(2-3)	45-46.	1996		
20314		Wang, J., K.D. Liu, C.G. Xu, X.H. Li and Qifa Zhang	The high level of wide-compatiblity of variety 'Dular' has a complex genetic basis,	Theor. Appl. Genet.	97	407-412.	1998		
20316	9039498	Wang, Z.X., A. Idonuma, Y. Umehara, W. Van Houten, I. Ashikawa, Y. Minobe, N. Kurata and T. Sasaki	Physical mapping of rice chromosome 1 with yeast artificial chromosomes (YACs).	DNA Res.	3	291-296.	1996		
20317		Wissuwa, M., M. Yano and N. Ae	Mapping of QTLs for phosphorus-deficiency tolerance in rice (Oryza sativa L.).	Theor. Appl. Genet.	97	777-783.	1998	PSTOL1	Pstol1, OsPSTOL1, OsPSTOL, PSTOL, Pstol1/OsPupK46-2, OsPupK46-2, Pup1, PHO
20318		Wu, L., H. Nagano, S. Kawasaki, Y. Kishima and Y. Sano	Identification of the DNA fragments located in the vicinity of waxy locus responsible for gamete elimination.	RGN	14	123-124.	1997		
20319		Wu, P., A. Lou, J. Zhu, L. Zhang, Y. Wu, N. Huang and D. Senadhira	Molecular markers linked to genes for tolerance to ferrous toxicity in rice seedlings.	RGN	14	90-92.	1997		
20320		Wu, X., Y. Ihara, K. Takeda and H. Kitano	New dm-type dwarf mutants varying in internode elongation patterns are controlled by different mutant genes at the same locus in rice (Oryza sativa L.).	Breeding Science	49	147-153	1999	SSI1,D61	Ssi1, Ssi1(Dm1)*, Dm1, Ssi1,d61*, dwf42, d61, OsBRI1, OSBRI1, BRI1, Os BRI1, Osbri1, OsBRKq1, BRKq1
20321		Wu, X., T. Saeda, K. Takeda and H. Kitano	Dominant gene Ssi1 expresses semidwarfism by inhibiting the second internode elongation in rice.	Breeding Science	50	17-22	2000		
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20323		Xiong, L., K.D. Liu, X.K. Dai, S.W. Wang, C.G. Xu, D.P. Zhang, M.A.S. Maroof, T. Sasaki and Q. Zhang	A high density RFLP map based on the F2 population of a cross between Oryza sativa and O. rufipogon using Cornell and RGP markers.	RGN	14	110-116.	1997		
20324		Xiong, L.Z., G.P. Yang, C.G. Xu, Qifa Zhang and M.A. Saghai Maroof	Relationships of differential gene expression in leaves with heterosis and heterozygosity in a rice diallel cross.	Molecular Breeding	4	129-136.	1998		
20325		Xiong, W., S. Uozu, K. Hattori, K. Takeda and H. Kitano	Dominant gene, Ssi1(t) located on the chromosome 1 shows the dm-type internode elongation pattern accompanied by a semidwarfness.	RGN	14	45-47.	1997		
20326	9065686	Xu, Y., L. Zhu, J. Xiao, N. Huang and S.R. McCouch	Chromosomal regions associated with segregation distortion of molecular markers in F2 , backcross, doubled haploid, and recombinant inbred populations in rice      (Oryza sativa L.).	Mol. Gen. Genet.	253	535-545.	1997		
20327		Yamagishi, M., M. Otani, M. Higashi, Y. Fukuta, K. Fukui, M. Yano and T. Shimada	Chromosomal regions controlling anther culturability in rice (Oryza sativa L.).	Euphytica	103	227-234.	1998		
20328		Yamaguchi, J.	Analysis of embryo-specific alpha-amylase using isolated mature rice embryos.	Breeding Science	48	365-370.	1998	AMY3E,AMY3D,AMY1A,AMY1C	Amy3D/E*(RAmy3D/E), alpha Amy8, alphaAmy8, AmyII-3, AMY1.4, Amy3E, Amy3D/E*, RAmy3D/E, Amy9, RAmy3E, alphaAmy8-C, AMY3E/AMY1.4, OsAmy3E, OsRamy3E,Amy3D/E*(RAmy3D/E), alpha Amy3, AmyII-4, AMY1.3, Amy3D, Amy3D/E*, RAmy3D/E, Amy3D_E, Amy8, aAmy3, RAmy3D, OsAmy3D, alphaAmy3, OsRamy3D,Amy1A/C*(RAmy1A/C), alpha Amy7, AMY1.1, Amy1A, RAmy1A/C, Amy1A/C*, Amy1, Amy1A_C, OsAmy1A, alphaAmy7-C, RAmy1A, AmyI-1, OsAmyI-1, OsRamy1A,Amy1A/C*(RAmy1A/C), alpha Amy10, Amy1C, RAmy1A/C, Amy1A/C*, Amy3, RAmy1C, OsAmy1C, alphaAmy10-C
20329		Yamaguchi, T., S. Kawasaki, Y. Nagato and H.-Y. Hirano	An approach to isolate the DL gene by positional cloning.	Breeding Science	48(Suppl. 2)	21	1998	DL	OsDL, dl(lop), lop, dl, dl1, OsDRPq3, DRPq3
20330		Yamaguchi, Y., R. Ikeda, H. Hirasawa, M. Minami and A. Ujihara	Linkage analysis of thermosensitive genic male sterility gene, tms-2 in rice  (Oryza sativa L.).	Breeding Science	47	371-373.	1997	TMS2,TMS2	tms2, ms81, tms-2,tms2
20331	9291967	Yamamoto, K. and T. Sasaki	Large-scale EST sequencing in rice.	Plant Mol. Biol.	35	135-144.	1997		
20332		Yamamoto, T., Y. Kuboki, S.Y. Lin, T. Sasaki and M. Yano	Fine mapping of quantitative trait loci Hd-1, Hd-2 and Hd-3, controlloing heading date of rice, as single Mendelian factors.	Theor. Appl. Genet.	97	37-44.	1998	SE1,HD2,HD3A	Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, OsHd1,  Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,Hd2(t), Hd2, qHD2(t), OsPRR37, Os-PRR37, PRR37, Prr4, OsPRR4, DTH7, Os DTH7, OsCCT28, CCT28, Ghd7.1, PRR37/Hd2, EH7-2, EH7-2/Hd2, Hd2/PRR37, PRR37-1a, PRR37-1b, PRR37-1c, PRR37-2a, PRR37- 2, HD7.2,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a 
20333		Yamanaka, S., I. Nakamura, H. Nakai and Y.I. Sato	Analysis for diversity of rice waxy mutation.2. Diversity of mutation within waxy structural gene.	Breeding Science	48(Suppl. 1)	260	1998		
20334		Yamanaka, S., I. Nakamura, H. Nakai, and Y.I. Sato	Analysis for diversity of rice waxy mutation. 3. Minute mutation of promoter and structural regions of waxy gene.	Breeding Science	48(Suppl. 2)	226	1998		
20335		Yan, J.Q., J. Zhu, C.X. He, M. Benmoussa and P. Wu	Quantitative trait loci analysis for the developmental behavior of tiller number in rice (Oryza sativa L.).	Theor. Appl. Genet.	97	267-274.	1998		
20336		Yang, D., A. Parco, S. Nandi, P. Subudhi, Y. Zhu, G. Wang and N. Huang	Construction of a bacterial artificial chromosome (BAC) library and identification of overlapping BAC clones with chromosome 4-specific RFLP markers in rice.	Theor. Appl. Genet.	95	1147-1154.	1997		
20337		Yang, D.C., G.B. Magpantay, M. Mendoza, N. Huang and D.S. Brar	Construction of a contig for a fertility restorer gene, Rf2 in rice using BAC library and its sequence homology with Rf2 gene of maize.	RGN	14	116-118.	1997		
20338		Yang, D., A. Sanchez, G.S. Khush, Y. Zhu and N. Huang	Construction of a BAC contig containing the xa5 locus in rice.	Theor. Appl. Genet.	97	1120-1124.	1998		
20339		Yang, Z.	Inheritance of photoperiod sensitive genic male sterility and breeding of photoperiod sensitive genic male-sterile lines in rice (Oryza sativa L.) through anther culture.	Euphytica	94	93-99.	1997		
20340		Yang, Z., T. Yujuan, H. Bingchao, C. Jianwei, C. Lixia, X. Yankang, Z. Xudong, Q. Qian and Z. Dali	The inheritance of resistance to gall midge in the rice variety Duokang 1.	RGN	14	67-69.	1997	RF3,RF2,GM6	Rf3* (R2, Rf2), Rf2, R2, Rf3, Rf-3,Rf2 (Rfx), Rfx, Rf2,Gm6(t), Gm6
20341	9291968	Yano, M. and T. Sasaki	Genetic and molecular dissection of quantitative traits in rice.	Plant Mol. Biol.	35	145-153.	1997		
20342		Yoshimura. A, T.W. Mew, G.S. Khush and T. Omura	Genetics of bacterial blight resistance in a breeding line of rice.	Phytopathology	74(7)	773-777.	1984	XA10	Xa10, Xa-10
20343	9291959	Yoshimura, A., O. Ideta and N. Iwata	Linkage map of phenotype and RFLP markers in rice.	Plant Mol. Biol.	35	49-60.	1997		
20344		Yoshimura, S., A. Yoshimura, N. Iwata, S.R. McCouch, M.L. Abenes, M.R. Baraoidan, T.W. Mew and R. Nelson	Tagging and combining bacterial blight resistance genes in rice using RAPD and RFLP markers.	Molecular Breeding	1	375-387.	1995	XA10,XA5,XA3,XA4	Xa10, Xa-10,xa5, xa-5, Xa5, TFIIAy, OsTFIIAgamma5, TFIIAgamma5, OsTFIIAgamma5/Xa5,Xa-3, Xa3 (Xa4b, Xa6, Xa9, Xa w), Xa3, Xaw, Xa6, Xa9, Xa4-b, XA26, Xa26(t), Xa26(t)*, Xa26, RKb, MRKb, MRKB, TRKb, Xa3/Xa26,Xa4, Xa4(Xa4a), Xa-4, Xa4-a, WAK, wak, xa4
20345		Yuan, S.-C., Z.-G. Zhang, H.-H. He, H.-L. Zen, K.-Y. Lu, J.-H. Lian and B.-X. Wang	Two phtoperiodic-reactions in photoperiod-sensitive genic male-sterile rice.	Crop Sci.	33	651-660.	1993		
20346		Zhang, G.Y., Y. Guo, S.L. Chen and S.Y. Chen	RFLP tagging of a salt tolerance gene in rice.	Plant Sci.	110	227-234.	1995		
20347	9291965	Zhang, H.-B. and R.A. Wing	Physical mapping of the rice genome with BACs.	Plant Mol. Biol.	35	115-127.	1997		
20348		Zhang, Q., Y.J. Gao, M. A. Saghai Maroof, S.H. Yang and J.X. Li	Molecular divergence and hybrid performance in rice.	Molecular Breeding	1	133-142.	1995		
20349		Zhang, Qifa, K.D. Liu, G.P. Yang, M.A. Saghai Maroof, C.G. Xu and Z.Q. Zhou	Molecularmarker diversity and hybrid sterility in indica-japonica rice crosses.	Theor. Appl. Genet.	95	112-118.	1997		
20350		Zhang, S., W.-Y. Song, L. Chen, D. Ruan, N. Taylor, P. Ronald, R. Beachy and C. Fauquet	Transgenic elite Indica rice varieties, resistnat to Xanthomonas oryzae pv.oryzae.	Molecular Breeding	4	551-558.	1998	XA23	Xa23(t)*, Xa23(t), Xa23, Xa23-Ni 
20351	8448360	Zhao, X. and G. Kochert	Phylogenetic distribution and genetic mapping of a microsatellite from rice Oryza sativa L.	Plant Mol. Biol.	21	607-614.	1993		
20352		Zhou, Z., P.J. Bebeli, D.J. Somers and J.P. Gustafson	Direct amplification of minisatellite-region DNA with VNTR core sequences in the genus Oryza.	Theor. Appl. Genet.	95	942-949.	1997		
20353		Zhu, J., M.D. Gale, S. Quarrie, M.T. Jackson and G.J. Bryan	AFLP markers for the study of rice biodiversity.	Theor. Appl. Genet.	96	602-611.	1998		
20354		Zhu, X. and J.N. Rutger	Inheritance of induced dominant and recessive genetic male-sterile mutants in rice (Oryza sativa L.).	SABRAO Journal	31(1)	17-22	1999	_,_,_	Ms,Ms,ms
20355		Zhuang, J.-Y., H.-X. Lin, J. Lu, H.-R. Qian, S. Hittalmani, N. Huang and K.-L. Zheng	Analysis of QTL x environment interaction for yield components and plant height in rice.	Theor. Appl. Genet.	95	799-808.	1997		
20356		Kaushik, R.P. and G.S. Khush	Endosperm mutants in rice Gene expression in Japonica and Indica backgrounds.	Cereal Chem.	68(5)	487-491.	1991	AE1,FLO1,DU1,FLO2,DU2	ae1,flo1, flo1-1, o,du1,flo2, flo3(t), Osflo2, Osflo3(t), Osflo-2, flo-2, FLO2-1, FLO2-2,du2
20357		Kinoshita, T.	Report of the Committee on Gene Symbolization, Nomenclature and Linkage Groups. Gene symbol registration No. 41.	RGN	9	2	1992		
20358		Yang, R.C., W.M.Li, N.Y.Wang, K.J.Liang & Q.H.Chen	Discovery and preliminary study on indica photosensitive genic male-steril germplasm 5460a.	Chinese J. Rice Sci.	3(1)	47-48	1989	TMS1	tms1 (TGMS), ms80, tms-1, tms(t)
20359		Kinoshita, T.	Report of the Committee on Gene Symbolization, Nomenclature and Linkage Group. Gene symbol registration No. 42.	RGN	9	2	1992		
20360		Miyoshi, K., Nakata, E. and Nagato, Y.	Characterization of viviparous mutants in rice.	Breeding Science	50	207-213	2000	RIV1,RIV2,ENL1	riv1,riv2,enl1
20361	11090216	Itoh, J.-I., Kitano, H., Matsuoka, M. and Nagato, Y.	SHOOT ORGANIZATION genes regulate shoot apical meristem organization and the pattern of leaf primordium initiation in rice.	Plant Cell	12	2161-2174	2000	SHO1,SHO3,SHO2	sho1, DCL4, OsDCL4, Os DCL4, Dcl4 ,sho3,sho2
20362		Iwata, N.	I. Registration of new gene symbols (New system)	RGN	13	12-18	1996	PI5-2,RHZ,GA14,PI14,PI16,PI8,PI17,PI12,PI15,PI13,PI30,PI3	Pi3, Pi5, Pi-3(t), Pi-3, Pi3(t), Pi5(t), Pi5-2, Pii,  RMg22, RMg21,Rhz(t), Rhz1,ga14,Pi14(t), Pi14(t)*, Pi14,Pi16(t), Pi16, Pi-16(t),Pi8, Pi-8,Pi17(t), Pi17, Pi-17(t),Pi12(t), Pi12(t)*, Pi12, Pi-12(t) ,Pi15(t), Pi15, RMg34.,Pi13(t), Pi13(t)*, Pi13,Pi-30(t), Pi30(t),Pi3, Pi5, Pi-3(t), Pi-3, Pi3(t), Pi5(t), Pi5-1, Pii,  RMg22, RMg21
20363		Kinoshita, T.	I. New gene symbols registered.	RGN	12	9-24	1995	PI3,GLUP3,PI5-2,ACEF1,S16,EF2,EF3,EF4,EST11,MAL3,S12,S14,SE6,SE7,TSV2,EST10,TSV1,AMP5,EST13,S13,GLUP1,MAL2,EST12,GA13,GLUP2,S15,GLUP4,PIIS1,PIIS2,PIM,PISE1,PISE2,PISE3,PIF,PIKM	Pi3, Pi5, Pi-3(t), Pi-3, Pi3(t), Pi5(t), Pi5-1, Pii,  RMg22, RMg21,glup3(esp7), esp7, glup3, OsVPE1, VPE1, OsaLeg3,Pi3, Pi5, Pi-3(t), Pi-3, Pi3(t), Pi5(t), Pi5-2, Pii,  RMg22, RMg21,Ac ef1, Acef1,,ef2 (=lf-1), ef2(t) (lf1), lf1, ef2,ef3(t), ef3,ef4, ef4(t),Est11(t), Est11,Mal3(t)), Mal3,S12(t),S14(t),se6(t),se7(t),tsv2,Est10,tsv1(RTSV), RTSV, tsv1,Amp5,Est13,CSB, OsCHR745, CHR745, OlCHR,Glup1(Esp5, Gup1), Gup1, Esp5, Glup1,Mal2,Est12,ga13,glup2(esp6, gup2), esp6, gup2, glup2,S15(S10), S10,glup4(esp8), esp8, glup4, OsRab5B2, Rab5a, OsRab5a, GPA1/Rab5a, GPA, GLUP4/Rab5, GLUP4/Rab5a, GPA1, OsGPA1,Pi is1(Rb4), Rb4, Rb-4, Piis1, Pi-is-1,Pi is2(Rb5), Rb5, Piis2, Pi-is-2, Rb-5,Pi-m, Pik-m(Pi m), Pik-m, Pi m, Pi-km,Pi se1(Rb1), Rb1, Pise1, RMg11, Pi-se, Pi-se-1, Pise-1, Rb-1,Pi se2(Rb2), Rb2, Pise2, Pi-se-2, Rb-2,Pi se3(Rb3), Rb3, Pise3, Pi-se-3, Rb-3,Pi f, PIF, Pif, RMg3, Pi-f,Pik-m, Pi-m, Pi-km, Pikm, Pi m, Pikm1-TS, Pikm2-TS, Pi-km1, Pi-km2
20364		Kinoshita, T.	I. Registration of new gene symbols.	RGN	11	8-11	1994	AO,RCN3,RCN4,CIF1,RCN5,ENSE1,BAMY1,MIK,S11,IFR,SLG,SK2(T)(SCL, FGR)	ao,rcn3,rcn4,Cinf(t)*(Lcr), cinf(t), Cif, Lcr, Cinf,rcn5,En Se1, EnSe1(t), EnSe1,betaAmy1, BetaAmy1, Amy10,mi k, mik, mi2,S11(t),Ifr, Rf16, Ifr1,slg, Rurm1, Urm1, OsSUMO7, SUMO7,sk2(t)(scl, fgr), fgr, scl, BAD2, BADH2, sk2, OsBADH2, Badh2, badh2, Os2AP, BADH-2, OsALDH10A8, ALDH10A8 
20365		Kinoshita, T.	I. Registration of new gene symbols.	RGN	10	7-10	1993	SE4,GA12,SHP5,MLS3,S8,GA11,S9,MAN,SPL10,S10,SE5	Se4(t),ga12,shp5(t), shp5,mls3,,ga11,,Man,spl10,,Se5, OsHO1, OsHO-1, OsHY1, HO-1, HO1, OsSE5, YGL2, YGL2/HO1
20366		Nagato, Y. & A. Yoshimura	I. Registration of new gene symbols.	RGN	15	13	1998	SE9	Se9
20367		Kinoshita, T.	I. Registration of new gene symbols.	RGN	9	2-4	1992	LKG,LKI2,TMS2,TMS1,GAL,TMS2,S7	Lk g,lki2,tms2, ms81, tms-2,tms1 (TGMS), ms80, tms-1, tms(t),gal(lt), It-m, lt, gal,tms2,S7
20368		Kinoshita, T.	II. Registration of new gene symbols.	RGN	6	2-6	1989	BPH9,BPH8,XA17,XA18,SH2,CHL10,GDH1,SD7,ENP1,D60,SH1,XA16,S6	Bph9, BPH9/26, Bph26(t), BPH26, Bph18(t), BPH18,bph8,Xa17,Xa18,sh2,chl10,Gdh1,sd7, sd7(t),Enp1*, Enp1,d60 (sd(t)), sd(t), dwf41, d60,sh1,Xa16,
20369		Iwata, N.	I. Registration of new gene symbols.	RGN	14	9-11	1997	HWD2,HWD1,PI19,PI18	hwd2,hwd1,Pi19(t), Pi14, Pi19,Pi18(t)*, Pi18(t), Pi18, Pi-18(t), Pi-18
20370		Nagato, Y. & A. Yoshimura	I. Registration of new gene symbols.	RGN	16	8-9	1999	PB1,GA14,PI21	Pb1, Pbst, RMG58.,ga14,pi21, rMg40, OsHMP26, HMP26, OsHIPP5, HIPP5, OsaHIP05, HIP05 
20371		Kinoshita, T.	I. Registration of new gene symbols.	RGN	5	3-6.	1988	XA13,D59,XA14,LG,ST5,AMP4,CHL8,CHL9	xa13, Xa13, Os8N3, Os-8N3, 8N3, OsSWEET11, SWEET11, OsSWEET11/Xa13, Xa13/Os8N3/SWEET11, Os8N3/Xa13, OsSWEET11/Os8N3, OsSWEET11a, SWEET11a,d59(t), dwf40, d59,Xa14,lg,st5,Amp4,chl8,chl9
20372		Kinoshita, T.	II. Registration of new gene symbols.	RGN	7	16-19.	1990	XA19,XA20,ST6,SPR3	xa19,xa20,st6(t), st6,Spr3(t), Spr3
20373		Kinoshita, T.	II. Registration of new gene symbols.	RGN	4	3-7.	1987	ESP1,AE2,DU5,LKI1,RCN2,Z6,LAM,DU4,ESP3,ESP2	esp1(rsp1), rsp1, esp1, OsESP1, ESP1/eRF1, eRF1, OseRF1,ae2(t), ae2,du5,lk i1, lki1, lk-i-1,rcn2,z6,lam(t), lam,du4,esp3(rsp3), rsp3, esp3,esp2(rsp2), rsp2, esp2, PDIL1-1
20374		Kinoshita, T.	I. Registration of new gene symbols.	RGN	8	2-3.	1991	SD1,DW3,GLC,CTS2	sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2, OsPHQ1, OsPHq1, PHq1,dw3,glc,Cts2(t), Cts2
20375		Sato, Shigetoshi	3. Gene symbols for heading behavior.	RGN	3	10-12.	1986	SE1	Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, OsHd1,  Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21
20376		Aida, T., S. Niikura & I. Takamure	Genic interaction between lhs (leafy hull sterile) and some mutant genes related to spikelet formation.	RGN	14	50-52	1997	MORI1,LHS1	mori1,OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO, OsLHS1, OsLG3b, LG3b, qLGY3, LGY3, DLN80, OsDLN80, OLR, OsOLR, GW3p6, OsGW3p6, OsMADS1GW3p6, MADS1GW3p6, qLGY3/OsLG3b/GW3p6
20377		Taniguchi, M. & Y. Futsuhara	A dense panicle mutant producing adventitious roots from spikelets.	RGN	5	113-114	1988	DN3	dn3
20378		Nagato, Y. and A. Yoshimura	Report of the Committee on Gene Symbolization, Nomenclature and Linkage Groups. Registration of new gene symbols.	RGN	17	6-7	2000	SE11,SE12,SE10	se11, se11(t)*,Se12,se10, se10(t)*
20379		Tsai, K.H.	Genetic analysis for heading time in tropical rice strains.	RGN	16	55-57	1999	SE11,SE10	se11, se11(t)*,se10, se10(t)*
20380		Fukuoka, S. & K. Okuno	QTL analysis for field resistance to rice blast using RFLP markers.	RGN	14	98-99	1997	PI21	pi21, rMg40, OsHMP26, HMP26, OsHIPP5, HIPP5, OsaHIP05, HIP05 
20381		Wang, W.M. and L.H. Zhu	A stamenless 1 rice mutant, transforms stamens partially into pistils.	RGN	17	20-21	2000	SL1	sl1(t), sl1, stl1, opb, OPB1, ps, PS, OPB, DLN2, OsDLN2, OsJAG, JAG, OsJAG.1, OsJAG.2, ZOS1-02, OsZOS1-02
20382		Mukohhata, M., M. Ashikari, M. Miwa, T. Sasaki, Y. Nagato, H. Kitano and M. Matsuoka	High resolution mapping of a rice gene affecting shoot organization, SHO1.	RGN	17	24-26	2000	SHO1	sho1, DCL4, OsDCL4, Os DCL4, Dcl4 
20383		Satoh, N. and Y. Nagato	SHOOTLESS 2 gene is required for both initiation and maintenance of shoot apical meristem in rice.	RGN	17	26-28	2000	SHL2	shl2, SHL2, sh2, OsRDR6, RDR6
20384		Ikeda, K., N. Nagasawa and Y. Nagato	ABERRANT PANICLE ORGANIZATION 1 gene regulates meristem identity in reproductive phase.	RGN	17	31-34	2000	APO1	apo1(t), apo1, SCM2, SCM2/APO1, OsFbox321, Os_F0393, Pbl6/APO1, Pbl6, OsPbl6,  OsFBX202, FBX202
20386		Yoshimura, A. & Y. Nagato	Report of the Committee on Gene Symbolization, Nomenclature and Linkage Groups.	RGN	18	6-8	2001	EUI1,GRH4,BPH11,EUI2,BPH12,XA23	eui1, GA16,17ox, CYP714D1, EUI, CYP714D1/EUI, OsEUI, LG5, OsLG5,Grh4,bph11,eui2,bph12,Xa23(t)*, Xa23(t), Xa23, Xa23-Ni 
20387		Zhang, Q., S.C. Lin, B.Y. Zhao, C.L. Wang, W.C. Yang, Y.L. Zhou, D.Y. Li, C.B. Chen, & L.H. Zhu	Identification and tagging a new gene for resistance to bacterial blight (Xanthomonas oryzae pv. oryzae) from O. rufipogon.	RGN	15	138-142	1998	XA23	Xa23(t)*, Xa23(t), Xa23, Xa23-Ni 
20388		Yang, R.C., S.L. Yang, R.H. Huang & Q.P. Zang	A new gene for elongated-uppermost-internode.	RGN	16	41-43	1999	EUI2	eui2
20389		Suzuki, Y., K. Ise and T. Nagamine	Geographical variation of the gene, (lox3(t)), causing lipoxygenase-3 deficiency in Asian rice varieties.	RGN	17	13-14	2000	LOX3,LOX1,LOX2	Lox3*, lox3(t), LOX-3, Lox3, OsLOX4, LOX4,LOX-1,LOX-2
20390		Yang, S.L., H.L. Ma, Q.P. Xue, B. Wang & R.C. Yang	Tagging of an elongated-uppermost-internode gene eui2 using microsatellite markers.	RGN	17	14-15.	2000	EUI2	eui2
20391		Tanabe, S.B., M. Ashikari, M. Yano, A. Yoshimura, M. Matsuoka, H. Kitano, T. Asahi and Y. Iwasaki	High resolution map of dwarf mutant gene, dwarf11 of rice.	RGN	17	18-19	2000	D11	d11(d8), dwf10, d8, D11/CYP724B1, d11, CYP724B1, GNS4, OsD11, PMM1, OsPMM1, PMM1/D11, NBG4, OsCPB1, CPB1, CPB1/D11
20392		Onishi, K., I. Takamure and H. Nakashima	The tiller development affected by d17 (tillering dwarf) in relation to the yield stability	RGN	17	22-24	2000	D17	d17(t), dwf14, d17, htd1, OsCCD7, CCD7, D17/HTD1, HTD1, OsHTD1, OsD17
20393		Asai, K., N. Satoh, H. Sasaki, H. Satoh & Y. Nagato	A heterochronic gene associated with juvenile-adult phase change in rice.	RGN	17	34-37.	2000	MORI1	mori1
20394		Chen, L.J., D.S. Lee and H.S. Suh	Identification of Ldh isozyme locus in rice (Oryza sativa complex).	RGN	17	39-40.	2000	LDH*	Ldh*, Ldh1
20395		Monna, L., Y. Sano & M. Yano	Genetic mapping of a rice photoperild sensitivity gene Enhancer-Se1.	RGN	17	40-42.	2000	ENSE1	En Se1, EnSe1(t), EnSe1
20396		Mukohhata, M., M. Ashikari, H. Kitano, Y. Nagato & M. Matsuoka	High resolution mapping of SHOOT ORGANIZATION 2 gene, SHO2.	RGN	18	17-19.	2001	SHO2	sho2
20397		Sumikura, T. and Y. Nagato	A mutant showing pleiotropic abnormalities in root, shoot and flower development in rice.	RGN	18	19-21.	2001	FIB	fib, OsFIB, OsTAR2, TAR2, TSG1, OsTSG1, OsTAA1, TAA1
20398		Kawakatsu, T., J-I. Itoh and Y. Nagato	PLASTOCHRON2 gene regulates the plastochron and the duration of vegetative phase.	RGN	18	21-24.	2001	PLA2	pla2, pla2(pla2-1, pla2-2), plt2, LHD2, OsLHD2
20399		Yamaki, S. and Y. Nagato	GYPSY EMBRYO gene controls embryo position by regulating integument development.	RGN	18	24-26.	2001	GEM	gem
20400	0	Kubo, T., N. Takano-Kai and A. Yoshimura	RFLP mapping of genes for long kernel and awn on chromosome 3 in rice.	RGN	18	26-28.	2001	LK3,AN5	lk3(t), lk3(t)*, SG3, GS3, SG3-GS3, OsGW3, OsGS3, RGG3/GS3/Mi/OsGGC1, RGG3, Mi, OsGGC1, GGC1, OsSYL3, SYL3, TT2, OsTT2,An5(t), an5, An5(t)*
20401		Kurakazu, T., Sobrizal and A. Yoshimura	RFLP mapping of genes for awn on chromosomes 4 and 5 in rice using Oryza meridionalis introgression lines.	RGN	18	28-30.	2001	AN7,AN8	An7(t), An7(t)*,An8(t), An8(t)*, An8
20402		Nishimura, A., Y. Sato, H. Kitano, Y. Nagato, M. Ashikari, and M. Matsuoka	Mapping of the rice MORI1 gene.	RGN	18	30-31.	2001	MORI1	mori1
20403		Ito, M., Y. Sato, H. Kitano, Y. Nagato, M. Ashikari, & M. Matsuoka	Mapping of the ABERRANT REGIONALIZATION OF EMBRYO 1 gene, ARE1, by CAPS analysis.	RGN	18	31-32.	2001	ARE1	are1
20404		Hu, F.-Y., D.-Y. Tao, P. Xu, J. Li, Y. Yang, E. Sacks, K. McNally, T.S. Cruz, J. Zhou, Z.-K. Li	Two dominant complementary genes controlling rhizomatous expression in Oryza longistaminata.	RGN	18	34-36.	2001	RHZ2,RHZ3	Rhz2,Rhz3
20405		Maekawa, M., A. Tanaka, N. Shikazono, & Y. Hase	Somatic reversion induced by ion beam irradiation in stable yellow leaf mutant of rice.	RGN	18	36-39.	2001	YL	yl*
20406		Yokoo, M. and M. Kato	Genetic female sterility as a tool for analyzing the mechanism of photosynthate translocation in rice.	RGN	18	41-42.	2001	FES1,FES2	fes1,fes2
20407		Kubo, T. and A. Yoshimura	Linkage analysis of an F1 sterility gene in Japonica/Indica cross of rice.	RGN	18	52-54.	2001	S26	S26(t), S26(t)*
20408		Kubo, T., M. Eguchi and A. Yoshimura	A new gene for F1 pollen sterility located on chromosome 12 in Japonica/Indica cross of rice.	RGN	18	54-55.	2001	S25	S25(t), S25(t)*
20409		Kubo, T., T. Kuchiishi and A. Yoshimura	Identification of a new gene for spotted leaf found in Japonica-Indica hybrid population of rice.	RGN	18	55-57.	2001	SPL12	spl12(t), spl12(t)*
20410		Sanchez, P.L., Sobrizal, K. Ikeda, H. Yasui & A. Yoshimura	RFLP mapping of genes controlling heading date found in Oryza glumaepatula Steud. introgression lines in rice.	RGN	18	57-59.	2001	EF1,qLHD3(t)	Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,qlhd3(t)
20411		Sobrizal, Y. Matsuzaki and A. Yoshimura	Mapping of a gene for pollen semi-sterility on chromosome 8 of rice.	RGN	18	59-61.	2001	RPL27-2,S27,RPL27-1	rpl27-2, rpl27, mtRPL27a, S27, S27(t), S27(t)*,S27(t), S27(t)*,rpl27-1, rpl27, mtRPL27b, S27, S27(t), S27(t)*
20412		Kubo, T. and A. Yoshimura	Linkage analysis of a gene responsible for F2 weakness in Japonica/Indica cross of rice.	RGN	16	64-65.	1999	HWE1	hwe1(t)*, hwe1, OsHWE1, OsEAF6/HWE1, OsEAF6, EAF6, HWS2, OsHWS2
20413		Sobrizal, C. Tanaka, H. Yasui and A. Yoshimura	Mapping of a gene for F2 weakness on chromosome 4 of rice.	RGN	18	61-63.	2001	HWF1	hwf1(t), hwf1(t)*, hwf1
20414		Gao, D.Y., Z.G. Xu, Z.Y. Chen, L.H. Sun, Q.M. Sun, F. Lu, B.S. Hu, Y.F. Liu and L.H. Tang	Identification of a new gene for resistance to bacterial blight in a somaclonal mutant HX-3 (indica).	RGN	18	66-68.	2001	XA25	Xa25(t), Xa25*, Xa25, Xa-25(t)
20415		Zhuang, J.-Y., J.-L. Wu, Y.-Y. Fan, Z.M. Rao and K.-L. Zheng	Genetic drag between a blast resistance gene and QTL conditioning yield trait detected in a recombinant inbred line population in rice.	RGN	18	69-70.	2001	PI24,PI25	Pi24, Pi24(t),Pi25, Pi25(t)
20416		Zhang, Q., C.L. Wang, K.J. Zhao, Y.L. Zhao, V.C. Caslana, X.D. Zhu, D.Y. Li and Q.X. Jiang	The effectiveness of advanced rice lines with new resistance gene Xa23 to rice bacterial blight.	RGN	18	71-73.	2001	XA23	Xa23(t)*, Xa23(t), Xa23, Xa23-Ni 
20417		Yoshimura, A. and Y. Nagato	Report of the Committee on Gene Symbolization, Nomenclature and Linkage Groups.	RGN	19	5-6.	2002	WEF1,PI24,PI25	wEfl,Pi24, Pi24(t),Pi25, Pi25(t)
20418		Tao, D., P. Xu, J. Li, Y.Yang, F. Hu, J. Zhou, X.L. Tan and M. Jones	Inheritance of japonica upland rice restoration lines and their restoration gene mapping.	RGN	19	23-27.	2002	RF1	Rf1 (Rf-1), rf-1, PPR791, PPR8-1, Rf-1, Rf1, Rf-1A, Rf5, Rf1a, RF5, Rf5(t)*(Rf(t)*), RF1A, PPR6, PLS31, OsPLS31
20419		Inukai, Y., Y. Shibata, H. Kitano, M. Ashikari and M. Matsuoka	Mapping of the CROWN ROOTLESS1 gene, CRL1, by CAPS analysis.	RGN	19	29-31.	2002	CRL1	crl1, crl1*, ARL1, ARL1/CRL1, OsLBD3-2, LBD3-2, OsCRL1
20420		Sobrizal and A. Yoshimura	Mapping of genes for slender kernel using Oryza glumaepatula introgression lines in rice.	RGN	19	40-42.	2002	SK1,SK2	sk1(t)**, slk1, sk1*,Sk2(t)**, Slk2, Sk2*
20421	0	Sato, K., M. Ashikari, K. Tamura, K. Mase, H. Kitano, M. Matsuoka and Y. Katayama	High resolution map of DWARF 50 (D50) in rice.	RGN	19	31-33.	2002	D12	d12(d50), dwf11, d50, d12, d32, F71, DMT9
20422		Yamaki, S. and Y. Nagato	OVULELESS gene regulates the initial step of ovule development in rice.	RGN	19	33-35.	2002	OVL	ovl
20423		Obara, M.K., E. Hayashida, H. Satoh and Y. Nagato	ADAXIAL SNOWY LEAF gene required for the chloroplast development in adaxial mesophyll cells.	RGN	19	36-38.	2002	ADS	ads
20424		Sobrizal and A. Yoshimura	Mapping of a gene for notched kernel found in backcross progeny of Oryza sativa L. and Oryza glumaepatula Steud.	RGN	19	38-40.	2002	NK2	nk2(t),  nk2
20425		Pavithran, K.	Inheritance and linkage relationship of notched kernel in rice (Oryza sativa).	Can. J. Genet. Cytol.	19	483-486.	1977	NK	Nk
20426		Ikeda, K., N. Nagasawa and Y. Nagato	ABERRANT PANICLE ORGANIZATION 1 gene regulates the meristem organization in rice.	RGN	19	42-45.	2002	APO1	apo1(t), apo1, SCM2, SCM2/APO1, OsFbox321, Os_F0393, Pbl6/APO1, Pbl6, OsPbl6,  OsFBX202, FBX202
20427		Nagasawa, N., Y. Nagato and H. Sakai	Physical mapping of the GIANT EMBRYO gene in a highly recombinogenic region of chromosome 7.	RGN	19	45-47.	2002		
20429		Ushijima, T., T. Kumamaru, M. Ogawa and H. Satoh	Mapping of esp1 gene for cystein-poor (CysP) prolamin decreased mutant in rice.	RGN	19	64-65.	2002	ESP1	esp1(rsp1), rsp1, esp1, OsESP1, ESP1/eRF1, eRF1, OseRF1
20430		Nagai, Y.S., Sobrizal, P.L. Sanchez, T. Kurakazu, K. Doi and A. Yoshimura	Sh3, a gene for seed shattering, commonly found in wild rices.	RGN	19	74-76.	2002	SH3	Sh3
20431		Nagai, Y.S., K. Doi and A. Yoshimura	A seed shattering gene, Sh3, and its inhibitor gene found in an African cultivated rice, Oryza glaberrima, Steud.	RGN	19	76-77.	2002	ISH3,SH3	iSh3, iSh3(t),Sh3
20432		Sanchez, P.S., T. Kurakazu, C. Hirata, Sobrizal and A. Yoshimura	Identification and mapping of seed shattering genes using introgression lines from wild rice species.	RGN	19	78-80.	2002	SH5-GLUM,SH6-MER	Sh5-glum,Sh6-mer
20433		Sobrizal, Y. Matsuzaki and A. Yoshimura	Mapping of pollen semi-sterility gene, S28(t), on rice chromosome 4.	RGN	19	80-82.	2002	S28	S28(t), rpl27-3, rpl27, mtRPL27a
20434		Sobrizal, Y. Matsuzaki, P.L. Sanchez, K. Ikeda and A. Yoshimura	Identification of a gene for male gamete abortion in backcross progeny of Oryza sativa and Oryza glumaepatula.	RGN	17	59-61.	2000	S22A_J2,S22,S22A,S22B,S22A_J3,S22A_J1	S22(t), S22A_j2,S22(t),S22(t), S22A,S22(t), S22B,S22(t), S22A_j3,S22(t), S22A_j1
20435		Sobrizal, Y. Matsuzaki, P.L. Sanchez, K. Ikeda and A. Yoshimura	Mapping of F1 pollen semi-sterility gene found in backcross progeny of Oryza sativa and Oryza glumaepatula Steud.	RGN	17	61-63.	2000	S28,S23	S28(t), rpl27-3, rpl27, mtRPL27a,S23(t)
20436		Kubo, T., M. Eguchi and A. Yoshimura	A new gene for F1 pollen sterility in Japonica/Indica cross of rice.	RGN	17	63-64.	2000	S24	S24(t), S24(t)*, Sb, F5-Du
20437		Lee, K.S. and G.S. Khush	Genetic analysis of resistance to bacterial blight, Xanthomonas oryzae pv. Oryzae, in rice.	RGN	17	72-73.	2000	XA7	Xa7
20438		Khush, G.S. and E.R. Angeles	A new gene for resistance to race 6 of bacterial blight in rice, Oryza sativa L.	RGN	16	92-93.	1999	XA24	xa24(t)*, xa24
20439		Lee, K.S., E.R. Angeles and G.S. Khush	Inheritance of resistance to race 6 of bacterial blight in rice.	RGN	17	73-74.	2000	XA13,XA24	xa13, Xa13, Os8N3, Os-8N3, 8N3, OsSWEET11, SWEET11, OsSWEET11/Xa13, Xa13/Os8N3/SWEET11, Os8N3/Xa13, OsSWEET11/Os8N3, OsSWEET11a, SWEET11a,xa24(t)*, xa24
20440		Wang, W.M., W.X, Zhai, G.H. Jiang, X.W. Chen, X.B. Li and L.H. Zhu	Construction of a BAC contig containing Xa4 locus on Chromosome 11.	RGN	17	74-76.	2000	XA4	Xa4, Xa4(Xa4a), Xa-4, Xa4-a, WAK, wak, xa4
20441		Kaku, H.	The additive effect of bacterial blight resistance genes Xa1 and Xa4 in rice.	RGN	17	78-80.	2000	XA4,XA1	Xa4, Xa4(Xa4a), Xa-4, Xa4-a, WAK, wak, xa4,Xa1(Xe), Xe, Xa1, Xa-1
20442		Kumar, A., S. Bhandarkar, D.J. Pophlay and M.N. Shrivastava	A new gene for gall midge resistance in rice accession Jhitpiti.	RGN	17	83-84.	2000	GM8	Gm8(t), Gm8
20443		Kumar, A., M.N Shrivastava and B.C. Shukla	A new gene for resistance to gall midge in rice cultivar RP2333-156-8.	RGN	16	85-87.	1999	GM7	Gm7*, Gm7
20444		Murata, K., M.Fujiwara, H. Murai, S. Takumi, N. Mori and C. Nakamura	Bph9, a dominant brown planthopper resistance gene, is located on the long arm of rice chromosome 12.	RGN	17	84-86.	2000	BPH9	Bph9, BPH9/26, Bph26(t), BPH26, Bph18(t), BPH18
20445		Su, C.C., H.Q. Zhai, X.N. Cheng and J.M. Wan	Detection and analysis of QTLs for resistance to brown planthopper, Nilaparvata lugens (Stal), in rice (Oryza sativa L.), using backcross inbred lines.	RGN	19	88-90.	2002	qBPH-12	qBPH-12
20446		Singh, K., Y. Vikal, S. Singh, H. Leung, H.S. Dhaliwal and G.S. Khush	Mapping of bacterial blight resistance gene xa8 using microsatellite markers.	RGN	19	94-97.	2002	XA8	xa8
20447		Ichitani, K., Y. Okumoto, M. Teraishi, T. Nakazaki, H. Yamagata and T. Tanisaka	Development of a new experimental line carrying a mutable slender glume gene, slg, in rice.	RGN	19	101-103.	2002	SLG	slg, Rurm1, Urm1, OsSUMO7, SUMO7
20448		Fujita, D., A. Yoshimura and H. Yasui	Detection of QTLs associated with antibiosis to green rice leafhopper, Nephotettix cincticeps Uhler, in four Indica rice varieties.	RGN	19	90-91.	2002	qGRH-2,qGRH-4,qGRH-5,qGRH-6,qGRH-11,qGRH-3	qGRH-2,qGRH-4,qGRH-5,qGRH-6,qGRH-11,qGRH-3
20449		Yazawa, S., H. Yasui, A. Yoshimura and N. Iwata	RFLP mapping of genes for resistance to green rice leafhopper (Nephotettix cincticeps Uhler) in rice cultivar DV85 using near isogenic lines. (Japanese with English summary)	Sci. Bull. Fac. Agr. Kyushu Univ.	52	169-175.	1998	GRH2	Grh2
20450		Tamura, K., Y. Fukuta, M. Hirae, S. Oya, I. Ashikawa and T. Yagi	Mapping of Grh1 locus for green rice leafhopper resistance in rice using RFLP markers.	Breeding Science	49	11-14.	1999	GRH1	Grh1
20451		Ito, M., Y. Sato, N. Nagasawa, H. Kitano, Y. Nagato and M. Matsuoka	Mapping of two SHOOTLESS genes, SHL1 and SHL2, by RFLP analysis.	RGN	16	39-41.	1999	SHL1,SHL2	shl1, sh1,shl2, SHL2, sh2, OsRDR6, RDR6
20452		Doi, K., K. Taguchi and A. Yoshimura	RFLP mapping of S20 and S21 for F1 pollen semi-sterility found in backcross progeny of Oryza sativa and O. glaberrima.	RGN	16	65-68.	1999	S21,S20	S21*, Hst44,S20*, Hst43
20453		Kubo, T, and A. Yoshimura	Complementary genes causing F2 sterility in Japonica/Indica cross of rice.	RGN	16	68-70.	1999	HSA1B,HSA1A,HSA2	hsa1(t), s(t), hst49, OsHSA1B,hsa1(t), s(t), hst49,hsa2(t)*, hsa2(t), hst50
20454		Taguchi, K., K. Doi and A. Yoshimura	RFLP mapping of S19, a gene for F2 pollen semi-sterility found in backcross progeny of Oryza sativa and O. glaberrima.	RGN	16	70-71	1999	S19	
20455		Zhong, D.B., S.B. Yu, J.L. Xu, L.J. Luo and Z.K. Li	QTLs for grain shattering in the Lemont/Teqing RI population.	RGN	16	71-74.	1999	qSH-1-1(t) (QSh1),qSH-4-1(t) (QSh4),qSH-5-1(t) (QSh5),qSH-9-1(t) (QSh9),qSH-2-1(t) (QSh2),qSH-3-1(t) (QSh3)	qSH-1-1(t) (QSh1),qSH-4-1(t) (QSh4),qSH-5-1(t) (QSh5),qSH-9-1(t) (QSh9),qSH-2-1(t) (QSh2),qSH-3-1(t) (QSh3)
20456		Sobrizal, K. Ikeda, P.L. Sanchez and A. Yoshimura	RFLP mapping of a seed shattering gene on chromosome 4 in rice.	RGN	16	74-75.	1999	SH3,SH	Sh3,Sh(t)*, Sh6
20457		Angeles, E.R. and G.S. Khush	A new gene for resistance to green leafhopper, Nephotettix virescens (Distant) in rice.	RGN	16	93-94.	1999	GLH9	Glh9(t)*, Glh9
20458		Yamasaki, M., A. Yoshimura and H. Yasui	Idenfification of a gene ovicidal to whitebacked planthopper, Sogatella furcifera Horvath in rice, Oryza sativa L.	RGN	16	94-96.	1999	OVC	Ovc, Ovc(t)
20459		Satoh, H., W.X. Li, Y. Takemoto, T. Ito, T. Kumamaru, L.Q. Qu and M. Ogawa	gulp4 controlling a 57H character was located on chromosome 12 in rice.	RGN	16	98-100.	1999	GLUP4	glup4(esp8), esp8, glup4, OsRab5B2, Rab5a, OsRab5a, GPA1/Rab5a, GPA, GLUP4/Rab5, GLUP4/Rab5a, GPA1, OsGPA1
20460		Nakazaki, T., K. Kitaura, N. Takei, Y. Fukuta and H. Ikehashi	Detection of genetic locus of self-incompatibility (S) thioredoxin like gene in rice (Oryza sativa L) using single nucleotide polymorphism (SNP).	RGN	16	110-113.	1999	STRN1	S-trn1(t)*, Strn-l(t)*, Strn, S-trn-l
20461		Chang, S.H., M.S. Chang, N.T. Hu and K.H. Tsai	Repeating backcrosses for induced earliness gene, Ef1-x.	RGN	17	42-44.	2000	EF1	Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 
20462		Tsai, K.H.	ef1 like plants produced from crosses between Ef1 lines.	RGN	17	45-46.	2000	EF1	Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 
20463		Maekawa, M. T. Rikishi, T. Matsuura and K. Noda	A gene for variegated albino linked to lg on chromosome 4.	RGN	15	107-108.	1998	ALV	al-v(t)*, yl, al11
20464		Maekawa, M., T. Rikishi, T. Matsuura and K. Noda	Non-segregation of albino character in rice plant heterozygous for variegated albino.	RGN	17	51-54.	2000	ALV	al-v(t)*, yl, al11
20465		Zhuang, J.Y., Y.Y. Fan, J.L. Wu, Y.W. Xia and K.L. Zheng	Mapping major and minor QTL for rice CMS-WA fertility restoration.	RGN	17	56-59.	2000	qRF-1(t),qRF-7(t),qRF-10(t),qRF-11(t)	qRf-1(t),qRf-7(t),qRf-10(t),qRf-11(t)
20466		Kaku, H. and T. Ogawa	The relationship between browning reaction and bacterial blight resistance gene Xa3 in rice.	RGN	17	76-78.	2000	XA3	Xa-3, Xa3 (Xa4b, Xa6, Xa9, Xa w), Xa3, Xaw, Xa6, Xa9, Xa4-b, XA26, Xa26(t), Xa26(t)*, Xa26, RKb, MRKb, MRKB, TRKb, Xa3/Xa26
20467		Yamasaki, M., A. Yoshimura and H. Yasui	Mapping of QTLs affecting egg mortality of whitebacked planthopper, Sagatella furcifera Horvath in rice, Oryza sativa L.	RGN	17	87-89.	2000	qOVA1-3,qOVA-5-2(t),qOVA5-1	qOVA1-3,qOVA-1-3(t),qOVA-5-2(t),qOVA5-1,qOVA-5-1(t)
20468		Nakazaki, T., N. Ihara, Y. Fukuta and H. Ikehashi	Abundant polymorphism in the flanking regions of two loci for basic PR-1 proteins as markers for indica-japonica differentiation in rice (Oryza sativa L.).	Breeding Science	50	173-181.	2000	RPR1-1,RPR1-2	Rpr1-1(t),Rpr1-2(t), Rpr1-2
20469		Fujii, K., Y. Hayano-Saito, K. Saito, N. Sugiura, N. Hayashi, T. Tsuji, T. Izawa and M. Iwasaki	Identification of a RFLP marker tightly linked to the panicle blast resistance gene, Pb1, in rice.	Breeding Science	50	183-188.	2000	PB1	Pb1, Pbst, RMG58.
20470		Dung, L.-V., I. Mikami, E. Amano and Y. Sano	Study on the response of dull endosperm 2-2, du2-2, to two Wx alleles in rice.	Breeding Science	50	215-219.	2000	DU2	du2
20471		Lu, C., J. Zou and H. Ikehashi	Gamete abortion locus detected by segregation distortion of isozyme locus Pgi1 in indica-japonica hybrids of rice (Oryza sativa L.).	Breeding Science	50	235-239.	2000	GA14	ga14
20472		Dong, Y., W. Dong, S. Shi and Q. Jin	Identification and genetic analysis of a thermo-sensitive seedling-color mutant in rice (Oryza sativa L.).	Breeding Science	51	1-4.	2001	TSC1	tsc1(t), tsc-1, TSC-1
20473		Kawaguchi, M., K. Murata, T. Ishii, S. Takumi, N. Mori and C. Nakamura	Assignment of a brown planthopper (Nilaparvata lugens Stal) resistance gen bph4 to the rice chromosome 6.	Breeding Science	51	13-18.	2001	BPH4	bph4
20474		Maekawa, M., T. Sato, T. Kumagai and K. Noda	Differential responses to UV-B irradiation of three near isogenic lines carrying different purple leaf genes for anthocyanin accumulation in rice (Oryza sativa L.).	Breeding Science	51	27-32.	2001	PL	Pl, Pl1
20475		Inukai, Y., M. Miwa, Y. Nagato, H. Kitano and A, Yamauchi	Characterization of rice mutants deficient in the formation of crown roots.	Breeding Science	51	123-129.	2001	CRL1,CRL2	crl1, crl1*, ARL1, ARL1/CRL1, OsLBD3-2, LBD3-2, OsCRL1,crl2*, crl2
20476		Inukai, Y., M. Miwa, Y. Nagato, H. Kitano and A. Yamauchi	RRL1, RRL2 and CRL2 loci regulating root elongation in rice.	Breeding Science	51	231-239.	2001	RRL1,RRL2,CRL2	rrl1(t), rrl1,rrl2(t), rrl2,crl2*, crl2
20477		Miyamoto, M., M. Yano and H. Hirasawa	Mapping of quantitative trait loci conferring blast field resistance in the Japanese uplant rice variety Kahei.	Breeding Science	51	257-261.	2001	qBFR4-1(t),qBFR4-2(t)	qBFR4-1(t),qBFR4-2(t)
20478		Miura, K., S.Y. Lin, M. Yano and T. Nagamine	Mapping quantitative trait loci controlling low temperature germinability in rice (Oryza sativa L.).	Breeding Science	51	293-299.	2001	qLTG-2-1(t),qLTG-4-1(t),qLTG-4-2(t),qLTG-5(t),qLTG-11(t)	qLTG-2-1(t),qLTG-4-1(t),qLTG-4-2(t),qLTG-5(t),qLTG-11(t)
20479		Hirano, H. and Y. Sano	Enhancement of Wx gene expression and the accumulation of amylose in response to cool temperatures during seed development in rice.	Plant Cell Physiol.	39	807-812.	1998	WX1	wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx
20480		Wu, C.Y., T. Adachi, T. Hatano, H. Washida, A. Suzuki and F. Takaiwa	Promoters of rice seed storage protein genes direct endosperm-specific gene expression in transgenic rice.	Plant Cell Physiol.	39	885-889.	1998	GLB1,GLUA3,GLU7	glb1(t)*, glb1(t), glb1, alpha-Glb, Glb-1, OsGlb1, Glb1, Glb, OsEnS-77,Glua3*, GLUA-3, GT22, GT3, Glu21, GluA-3, OsEnS-47, EnS-47, GLU3,Glu7*(GluB2), Glu7, GluB2, GLUB2, GLUB-2, GluB-2, GluB-7, GLUB7
20481	10555303	Wang, A.Y., M.H. Kao, W.H. Yang, Y. Sayion, L.F. Liu, P.D. Lee and J.C. Su	Differentially and developmentally regulated expression of three rice sucrose synthase genes.	Plant Cell Physiol.	40	800-807.	1999	RSUS2,RSUS3,RSUS1	sus2, RSus2(t), SUS2, SS1, OsScS1, RSs1, RSus2, OsSUS2, RSS1, RSus1, OsSusy2, Susy2, OsRSUS1, RSUS1,RSus3(t), SUS3, SS3, OsScS3, RSs3, RSus3, OsSUS3, RSS3, OsEnS-111, Susy3, OsSusy3,sus1, RSus1(t), SUS1, SS2, OsScS2, RSs2, RSus1, SuSy1, OsSUS1, RSS2, RSus2, OsRSUS1
20482	10805588	Hirano, K., T. Teraoka, H. Yamanaka, A. Harashima, A. Kunisaki, H. Takahashi and D. Hosokawa	Novel mannose-binding rice lectin composed of some isolectins and its relation to a stress-inducible salT gene.	Plant Cell Physiol.	41	258-267.	2000	SALT	salT*(sal1), SalT1*, sal1, Sal1, SALT, ML, SalT, OsSalT, OsJRL, JRL, Osl43, OsL43, OsMBL1, MBL1, OsJRL01, JRL01, OsJRL1, JRL1
20484	10965945	Terada, R., M. Nakajima, M. Isshiki, R.J. Okagaki, S.R. Wessler and K. Shimamoto	Antisense Waxy gene with highly active promoters effectively suppress Waxy gene expression in transgenic rice.	Plant Cell Physiol.	41	881-888.	2000	WX1	wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx
20485	8673344	Nakagawa, H., E. Ohkura, K. Ohmiya and T. Hattori	The seed-specific transcription factor VP1 (OSVP1) is expressed in rice suspension-cultured cells.	Plant Cell Physiol.	37	355-362.	1996	VP1	Vp1* (OSVP1), OsVP1, OsVp1, Vp1, ABI3, OsABI3, OsLFL4, OsVp-1, OSVP1
20486	11917085	Miyoshi, K., Y. Kagaya, Y. Ogawa, Y. Nagato and T. Hattori	Temporal and spatial expression pattern of the OSVP1 and OSEM genes during seed development in rice.	Plant Cell Physiol.	43	307-313.	2002	EM,VP1	Em*, EMP1, Emp1, EM, Em, OsEm, Osem, OsLEA21, OsEm1, Em1 ,Vp1* (OSVP1), OsVP1, OsVp1, Vp1, ABI3, OsABI3, OsLFL4, OsVp-1, OSVP1
20487	12040096	Hayama, R., T. Izawa and K. Shimamoto	Isolation of rice genes possibly involved in the photoperiodic control of flowering  by a fluorescent differential display method.	Plant Cell Physiol.	43	494-504.	2002	GI,SE5	OsGI, Gi, Os-GI,Se5, OsHO1, OsHO-1, OsHY1, HO-1, HO1, OsSE5, YGL2, YGL2/HO1
20489	12091719	Ma, J.F., R. Shen, Z. Zhao, M. Wissuwa, Y. Takeuchi, T. Ebitani and M. Yano	Response of rice to Al stress and identification of quantitative trait loci for Al tolerance.	Plant Cell Physiol.	43	652-659.	2002	qAL-1(t),qAL-2(t),qAL-6(t)	qAl-1(t),qAl-2(t),qAl-6(t)
20491	12354914	Ikeda, A., Y. Sonoda, P. Vernieri, P. Perata, H. Hirochika and J. Yamaguchi	The slender rice mutant, with constitutively activated gibberellin signal transduction, has enhanced capacity for abscisic acid level.	Plant Cell Physiol.	43	974-979.	2002	SLR1	slr1-1, slr1, slr, GAI, OsGAI, OsSLR1, Os SLR1, OsRGA1, OsGRAS-18, OsGRAS-18, GRAS-18, GRAS18, SLR-1
20493	12668770	Biswas, K.K., R. Neumann, K. Haga, O. Yatoh and M. Iino	Photomorphogenesis of rice seedlings: a mutant impaired in phytochrome-mediated inhibition of coleoptile growth.	Plant Cell Physiol.	44	242-254.	2003	CPM1	cpm1(t)
20495	11828031	Kyozuka, J. and K. Shimamoto	Ectopic expression of OsMADS3, a rice ortholog of AGAMOUS, caused a homeotic transformation of lodicules to stamens in transgenic rice plants.	Plant Cell Physiol.	43	130-135.	2002	RAG	MADS3, OsMADS3, OsMADS3(t), RMADS222, RAG1, rf3
20496		Nakamura, H., Y. Tokairin, S. Hidaka, S. Ejiri and K. Tsutsumi	Structural variations of the aldolase gene region in different rice cultivars.	Breeding Science	49	33-37.	1999	ALDC2,ALDCA,ALDP,ALDC1	AldC-2,AldC-a,Aldo, OsALDO, ALDO, FBAase, OsFBAase, ALDOA, OsALDOA ,AldC-1
20497		Ito, J.I. and Y. Nagato	A mutation associated with phyllotaxy and leaf blade-sheath boundary in rice.	RGN	15	90-93	1998	DEC	dec*, dec
20498		Kinae, T., H. Satoh, H. Kitano and Y. Nagato	A multiple radicle1 mutation affects the number of radicles and the vegetative growth in rice.	RGN	15	93-96	1998	MR1	mr1*, mr1
20499		Itoh, Y., I. Takamure and S. Shibata	Developmental timing of phenotypic expression in a mutant with twisted leaf blade.	RGN	15	96-98.	1998	TW	tw(t)*(tl), tl, tw
20500		Sanchez, A.C. and G.S. Khush	New gene for extra glume character in rice.	RGN	15	98-99	1998	EG2	eg2(t), eg2
20501		Sanchez, A.C. and G.S. Khush	A gene for collarless phenotype in rice.	RGN	15	99-100	1998	LG,PL2,COL	lg,pl2(t), pl2,col
20502		Kumar, A., M.N. Shrivastava and R.K. Sahu	Genetic analysis of ARC5984 for gall midge resistance - a reconsideration.	RGN	15	142-143	1998	GM5,GM3	Gm5*, Gm5,gm3*, gm3
20503		Cai, H.W. and H. Morishima	Mapping QTLs for heading behavior using RI population derived from a cross between wild and cultivated rice strains.	RGN	15	144-146	1998	qDTH-1-1,qDTH-2-1,qDTH-2-2,qDTH-3-1,qDTH-4-1,qDTH-4-2,qDTH-5-1,qDTH-5-2,qDTH-6-1,qDTH-6-2,qDTH-8,qDTH-9-1,qDTH-9-2,qDTH-11-1,qDTH-11-2,qDTH-12,qBVP-1,qBVP-3-1,qBVP-3-2,qBVP-4,qBVP-5-1,qBVP-5-2,qBVP-8,qBVP-11,qPSP-1,qPSP-6(Se1?),qPSP-11,qPSP-8	qDTH-1-1,qDTH-2-1,qDTH-2-2,qDTH-3-1,qDTH-4-1,qDTH-4-2,qDTH-5-1,qDTH-5-2,qDTH-6-1,qDTH-6-2,qDTH-8,qDTH-9-1,qDTH-9-2,qDTH-11-1,qDTH-11-2,qDTH-12,qBVP-1,qBVP-3-1,qBVP-3-2,qBVP-4,qBVP-5-1,qBVP-5-2,qBVP-8,qBVP-11,qPSP-1,qPSP-6(Se1?),qPSP-11,qPSP-8
20504		Doi, K., K. Taguchi and A. Yoshimura	A new locus affecting high F1 pollen sterility found in backcross progenies of Japonica rice and African rice.	RGN	15	146-148	1998	S18	S18*, Hst39
20505		Doi, K. and A. Yoshimura	RFLP mapping of a gene for heading date in an African rice.	RGN	15	148-149	1998	EF1	Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 
20506		Kubo, T. and A. Yoshimura	Linkage analysis of a gene controlling F2 sterility in Japonica/Indica backcrossed progenies of rice.	RGN	15	149-151	1998	HSA1B,HSA1A	hsa1(t), s(t), hst49, OsHSA1B,hsa1(t), s(t), hst49
20507		Wan, J., H. Ikehashi, M. Sakai, H. Horisue and T. Imbe	Mapping of hybrid sterility gene S17 of rice (Oryza sativa L.)  by isozyme and RFLP markers.	RGN	15	151-154	1998	S17	S17(t)*
20508		Li, Z., A.H. Paterson, S.R.M. Pinson and G.S. Khush	A major gene, Ta1 and QTLs affecting tiller and leaf angles in rice.	RGN	15	154-156	1998	TA1,qTA-2,qTA-1,qTA-5,qTA-8,qLA-1,qLA-3,qFLA-2,qFLA-5,qFLA-6,qFLA-7,qFLA-9	Ta1*, Ta1,qTA-2,qTA-1,qTA-5,qTA-8,qLA-1,qLA-3,qFLA-2,qFLA-5,qFLA-6,qFLA-7,qFLA-9
20509		Nguyen, T.L., G. Zhang, G. Magpantay, S.S. Viramani, N. Huang, D.S. Brar, G.S. Khush and Z.K. Li	PCR-based DNA markers for the WA-CMS fertility restoring gene Rf-3 in rice.	RGN	15	156-158	1998	RF3	Rf3* (R2, Rf2), Rf2, R2, Rf3, Rf-3
20510		Yamaguchi, T., S. Kawasaki, Y. Nagato and H.Y. Hirano	Construction of the BAC contig encompassing the dl locus.	RGN	15	158-160	1998	DL	OsDL, dl(lop), lop, dl, dl1, OsDRPq3, DRPq3
20511		Inukai, Y., A. Yamauchi, H. Satoh, Y. Nagato and H. Kitano	Genetic analysis of induced rice developmental mutants showing radicleless and crown rootless.	RGN	15	88-90	1998	CRL2,CRL1,RAL2,RAL1	crl2*, crl2,crl1, crl1*, ARL1, ARL1/CRL1, OsLBD3-2, LBD3-2, OsCRL1,ral2*, ral2,ral1*, ral1
20512		Kikuchi, K., K.T. Yoshida, Y. Nagato and H.Y. Hirano	Chromosomal location of the OsNAC genes.	RGN	15	160-161	1998	NAC4,NAC3,NAC5,NAC6	OsNAC4, NAC68, ONAC068, OnNAC4*, OnNAC4, OsNAC4/ONAC068,OsNAC3, NAC67, ONAC067, OnNAC3*, OsNAC3/ONAC067, DLN180, OsDLN180,OsNAC5, NAC71, ONAC071, ONAC009, ONAC9, ONAC020, ONAC20, OnNAC5*, OnNAC5, OsNAC5/ONAC009,OsNAC6, ONAC048, NAC48, SNAC2, SNAC2/OsNAC6, OsNAC6/ONAC048, OsSNAC2, SNAC-2, OsSNAC-2, OsNAC2
20513		Kikuchi, K., K.T. Yoshida, M. Uekuchi-Tanaka, M. Matsuoka, Y. Nagato and H.Y. Hirano	Molecular characterization of the rice OsNAC genes.	RGN	14	125-126	1997	NAC4,NAC5,NAC6,NAC3	OsNAC4, NAC68, ONAC068, OnNAC4*, OnNAC4, OsNAC4/ONAC068,OsNAC5, NAC71, ONAC071, ONAC009, ONAC9, ONAC020, ONAC20, OnNAC5*, OnNAC5, OsNAC5/ONAC009,OsNAC6, ONAC048, NAC48, SNAC2, SNAC2/OsNAC6, OsNAC6/ONAC048, OsSNAC2, SNAC-2, OsSNAC-2, OsNAC2,OsNAC3, NAC67, ONAC067, OnNAC3*, OsNAC3/ONAC067, DLN180, OsDLN180
20514		Miyoshi, K., T. Hattori and Y. Nagato	Expression pattern of OSVP1 in developing rice seed.	RGN	14	138-141	1997	VP1	Vp1* (OSVP1), OsVP1, OsVp1, Vp1, ABI3, OsABI3, OsLFL4, OsVp-1, OSVP1
20515		Matsukura, C. and J. Yamaguchi	The first leaf growth promoted by gibberellins in a dwarf mutant of rice.	RGN	14	153-155	1997	D35	d35, d35(t), dwf30, OsKOL2, KOL2, KO2, OsKO2, OSKO2, KO, CYP701A, CYP701A6, Os KO2, OsKOL2/CYP701A
20516		Mikami, I., A. Takahashi, Khin-Thidar and Y. Sano	A candidate for C (Chromogen for anthocyanin) gene.	RGN	17	54-56	2000	C	C, Cp, OsC1, Os-C1, C1, OsMyb6, Myb6, OsPL6, PL6, OsGL1E, GL1E, Os2R_MYB63, 2R_MYB63, OsC1PLSr, C1PLSr
20517		Sanchez, P.L., Sobrizal, K. Ikeda, H. Yasui and A. Yoshimura	Linkage analysis of late heading genes using Oryza glumaepatula lines.	RGN	17	46-48	2000	LHD1,LHD2	Lhd1(t),Lhd2(t)
20518	12881500	Sonoda, Y., A. Ikeda, S. Saiki, N. von Wiren, T. Yamaya and J. Yamaguchi	Distinct expression and function of three ammonium transporter genes (OsAMT1;1 - 1;3) in rice.	Plant Cell Physiol.	44	726-734	2003	AMT1;2,AMT1;1,AMT1;3	OsAMT1;2, AMT1-2, Osamt1-3, "OsAMT1,3", OsAMT1;3, OsAMT1.3, OsAMT1.2, AMT1.2,OsAMT1;1, OsAMT1:1, OsAMT1, AMT1-1, AMT1, OsAMT1p, OsAMT1-1, Osamt1-1, "OsAMT1,1", OsAMT1.1, AMT1.1, FCO12,OsAMT1;3, AMT1-3, Osamt1-2, "OsAMT1,2", OsAMT1;2, OsAMT1.3, AMT1.2
20519		Lin, H., M. Ashikari, U. Yamanouchi, T. Sasaki and M. Yano	Identification and characterization of a quantitative trait locus, Hd9, controlling heading date in rice.	Breeding Science	52	35-41	2002	HD9	Hd9(t), qHD9(t)
20520	10655238	Yamamoto, T., H. Lin, T. Sasaki and M. Yano	Identification of heading date quantitative trait locus Hd6 and characterization of its epistatic interactions with Hd2 in rice using advanced backcross progeny.	Genetics	154	885-891	2000	HD7,HD6	Hd7(t), qHD7(t),Hd6(t)*, OSCKA2, OsCKA2, CKA2, OsCKA2-1, CKA2-1, Hd6/CK2alpha, CK2alpha
20521		Murai, M., I. Takamure, S. Sato, T. Tokutome and Y. Sato	Effects of the dwarfing gene originating from 'Dee-geo-woo-gen' on yield and its related traits in rice.	Breeding Science	52	95-100	2002	SD1	sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2, OsPHQ1, OsPHq1, PHq1
20523		Ashikari, M., A. Sasaki, M. Ueguchi-Tanaka, H. Itoh, A. Nishimura, S. Datta, K. Ishiyama, T. Saito, M. Kobayashi, G.S. Khush, H. Kitano and M. Matsuoka	Loss-of-function of a rice gibberellin biosynthetic gene, GA20 oxidase (GA20ox-2), led to the rice 'Green revolution'.	Breeding Science	52	143-150	2002	SD1	sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2, OsPHQ1, OsPHq1, PHq1
20524		Itoh, H., M. Ueguchi-Tanaka, T. Sakamoto, T. Kayano, H. Tanaka, M. Ashikari and M. Matsuoka	Modification of rice plant height by suppressing the height-controlling gene, D18, in rice.	Breeding Science	52	215-218	2002	D18	d18-h  (d18-I, d18h), dwf15, d25, d18, d18-k, d18-AD, d18-dy, OsGA3ox2, ga3ox2, OsGA3OX2, GA3OX2, OsGA3ox-2, GA3ox-2, GA3ox1
20526		Murai, M., S. Sato, A. Nagayama, N. Ishii and S. Ihashi	Effects of a major gene Ur1 characterized by undulation of rachis branches on yield and its related traits in rice.	Breeding Science	52	299-307	2002	UR1	Ur1
20527	12558863	Miyamoto, M. and H. Hirasawa	Relationship between RFLP loci with different alleles on chromosome 4 and the levels of blast field resistance in Japanese upland rice varieties.	Breeding Science	53	1-5	2003	qBFR4-1(t),qBFR4-2(t)	qBFR4-1(t),qBFR4-2(t)
20528		Lin, H., Z.W. Liang, T. Sasaki and M. Yano	Fine mapping and characterization of quantitative trait loci Hd4 and Hd5 controlling heading date in rice.	Breeding Science	53	51-59	2003	HD5,HD4	Hd5(t)*, Hd5, qHD5, HAP3H, OsHAP3H, NF-YB, CBF-A, DTH8 , qHD5(t)*, Ghd8, Ghd8/DTH8, Lhd1, NF-YB11, OsNF-YB11, NFYB11, LH8, DTH8/Ghd8, RH8, DTH8/Ghd8/LHD1, CAR8, DTH8/Ghd8/ OsHAP3H, EF8, OsEF8,Hd4(t), qHD4(t), qHD4
20529		Tada, Y., H. Akagi, T. Fujimura and T. Matsuda	Effect of an antisense sequence on rice allergen genes comprising a multigene family.	Breeding Science	53	61-67	2003	RA	RA(t)
20532		Sharma, R.N., B.S. Gill, T. Sasaki, G. Galiba, J. Sutka, D.A. Laurie and J.W. Snape	Comparative mapping of the wheat chromosome 5A Vrn-A1 region with rice and its relationship to QTL for flowering time.	Theor. Appl. Genet.	97	103-109	1998	HD6	Hd6(t)*, OSCKA2, OsCKA2, CKA2, OsCKA2-1, CKA2-1, Hd6/CK2alpha, CK2alpha
20533		Fukuoka, S., H. Namai and K. Okuno	RFLP mapping of the genes controlling hybrid breakdown in rice (Oryza sativa L.).	Theor. Appl. Genet.	97	446-449	1998	HWD2,HWD1	hwd2,hwd1
20535		Rajyashri, K.R., S. Nair, N. Ohmido, K. Fukui, N. Kurata, T. Sasaki and M. Mohan	Isolation and FISH mapping of Yeast Artificial Chromosomes (YACs) encompassing an allele of the Gm2 gene for gall midge resistance in rice.	Theor. Appl. Genet.	97	507-514	1998	GM2	Gm2, Gm-2, GM-2
20536		Dung, L.V., T. Inukai and Y. Sano	Dissection of a major QTL for photoperiod sensitivity in rice: its association with a gene expressed in an age-dependent manner.	Theor. Appl. Genet.	97	714-720	1998	SE1,SEPAT	Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, OsHd1,  Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,se-pat(t), sepat(t)*(se), sepat(t)*
20537		Kisaka, H., H. Sano and T. Kameya	Characterization of transgenic rice plants that express rgp1, the gene for a small GTP-binding protein from rice.	Theor. Appl. Genet.	97	810-815	1998	RGP1	rgp1, OsRab11E2
20538		Matsumura, H., T. Takano, G. Takeda and H. Uchimiya	Adh1 is transcriptionally active but its translational product is reduced in a rad mutant of rice (Oryza sativa L.), which is vulnerable to submergence stress.	Theor. Appl. Genet.	97	1197-1203	1998	RAD	rad,rad*, OsRAD, GEN1, OsGEN-L, OsGEN1 
20539		Ni, J.J., P. Wu, D. Senadhira and N. Huang	Mapping QTLs for phosphorous deficiency tolerance in rice (Oryza sativa L.).	Theor. Appl. Genet.	97	1361-1369	1998	qPHO-12(t) (PHO(t))	qPHO-12(t) (PHO(t))
20540	7915844	Zhang, Q., B.Z. Shen, X.K. Dai, M.H. Mei, M.A. Saghai Maroof and Z.B. Li	Using bulked extremes and recessive class to map genes for photoperiod-sensitive genic male sterility in rice.	Proc. Natl. Acad. Sci. U.S.A.	91	8675-8679	1994	PMS1	pms1*(Pms1,pgms,ms1P), pms1*, Pms1, ms1-P, pms1(t)*, pms1(t)
20541		He, Y.Q., J. Yang, C.G. Xu, Z.G. Zhang, and Q. Zhang	Genetic bases of instability of male sterility and fertility reversibility in photoperiod-sensitive genic male-sterile rice.	Theor. Appl. Genet.	99	683-693	1999	PMS1,PMS2	pms1*(Pms1,pgms,ms1P), pms1*, Pms1, ms1-P, pms1(t)*, pms1(t),pms2*(Pms2,pgms,ms2P), Pms2, ms2-P, pms2*, ms74
20542		Mei, M.H., X.K. Dai, C.G. Xu and Qifa Zhang	Mapping and genetic analysis of the genes for photoperiod-sensitive genic male sterility in rice using the original mutant Nongken 58S.	Crop Sci.	39	1711-1715	1999	PMS3	pms3, LDMAR
20543		Little, P.R., G.B. Hilder, and E.H. Dawson	Differential effect of dilute alkali on 25 varieties of milled white rice.	Cereal Chem.	35	111-126	1958	ALK,qASS-6-1(t)	alk, SSII-3, OsSSIIa, OsSSII-3, SSIIa, SSS2A, OsSSIIaChr6, SS2a,qASS-6-1(t)
20544		He, P., S.G. Li, Q. Qian, Y.Q. Ma, J.Z. Li, W.M. Wang, Y. Chen and L.H. Zhu	Genetic analysis of rice grain quality.	Theor. Appl. Genet.	98	502-508	1999	qAC-5-1(t) (qAC-5),qGC-2-1(t) (qGC-2),qGC-7,qASS-6-1(t),qPGWC-8,qPGWC-12,qSWC-3,ALK,WX1	qAC-5-1(t) (qAC-5),qGC-2-1(t) (qGC-2),qGC-7,qASS-6-1(t),qPGWC-8,qPGWC-12,qSWC-3,alk, SSII-3, OsSSIIa, OsSSII-3, SSIIa, SSS2A, OsSSIIaChr6, SS2a,wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx
20545	4771843	Cagampang, G.B., C.M. Perez and B.O. Juliano	A gel consistency test for eating quality of rice.	J. Sci. Food Agric.	24	1589-1594	1973	qGC-2-1(t) (qGC-2),qGC-7	qGC-2-1(t) (qGC-2),qGC-7
20546		Huq, E., S. Harrington, M.A. Hossain, F. Wen, S.R. McCouch and T.K. Hodges	Molecular characterization of pdc2 and mapping of three pdc genes from rice.	Theor. Appl. Genet.	98	815-824	1999	PDC2,PDC1,PDC3	pdc2*, pdc2,pdc1*, pdc1, pdc4, pdc 1, PDC 1, OsPDC1,pdc3*, pdc3, OsPDC3, OsSTA202
20551		Sanchez, A.C., L.L. Ilag, D. Yang, D.S. Brar, F. Ausubel, G.S. Khush, M. Yano, T. Sasaki, Z. Li and N. Huang	Genetic and physical mapping of xa13, a recessive bacterial blight resistance gene in rice.	Theor. Appl. Genet.	98	1022-1028	1999	XA13	xa13, Xa13, Os8N3, Os-8N3, 8N3, OsSWEET11, SWEET11, OsSWEET11/Xa13, Xa13/Os8N3/SWEET11, Os8N3/Xa13, OsSWEET11/Os8N3, OsSWEET11a, SWEET11a
20552		Nishizawa, Y., Z. Nishio, K. Nakazono, M. Soma, E. Nakajima, M. Ugaki and T. Hibi	Enhanced resistance to blast (Magnaporthe grisea) in transgenic Japonica rice by constitutive expression of rice chitinase.	Theor. Appl. Genet.	99	383-390	1999	CHT2,CHT3	Cht2*, Cht2, RC7, OsChia1b, Chia1b, CHIT17, OsCHIT17,Cht3*, Cht3, Cht-3, CH6, OsChia1c, CHI7, OsCHI11, CHI11, OsPR3, PR3
20553		Tan, Y.F., J.X. Li, S.B. Yu, Y.Z, Xing, C.G. Xu and Q. Zhang	The three important traits for cooking and eating quality of rice grains are controlled by a single locus in an elite rice hybrid, Shanyou 63.	Theor. Appl. Genet.	99	642-648	1999	WX1	wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx
20554		Bao, J.S., X.W. Zheng, Y.W. Xia, P. He, Q.Y. Shu, X. Lu, Y. Chen and L.H. Zhu	QTL mapping for the paste viscosity characteristics in rice (Mryza sativa L.).	Theor. Appl. Genet.	100	280-284	2000	qPKV-2,qPKV-12,qHPV-6-1,qHPV-6-2,qCPV-6-1,qCPV-6-2,qCPV-1,qBDV-7,qBDV-6,qBDV-12,qCSV-1,qCSV-6-2,qCSV-6-1,qCSV-7,qSBV-1,qSBV-5-1,qSBV-5-2,qSBV-6,qBDV-1,qBDV-5	qPKV-2,qPKV-12,qHPV-6-1,qHPV-6-2,qCPV-6-1,qCPV-6-2,qCPV-1,qBDV-7,qBDV-6,qBDV-12,qCSV-1,qCSV-6-2,qCSV-6-1,qCSV-7,qSBV-1,qSBV-5-1,qSBV-5-2,qSBV-6,qBDV-1,qBDV-5
20555		Lorieux, M., M.-N. Ndjiondjop and A. Ghesquiere	A first interspecific Oryza sativa x Oryza glaberrima microsatellite-based genetic linkage map.	Theor. Appl. Genet.	100	593-601	2000	S10	
20556		Dong, N.V., P.K. Subudhi, P.N. Luong, _v.D. Quang, T.D. Quy, J.G. Zheng, B. Wang and H.T. Nguyen	Molecular mapping of a rice gene conditioning thermosensitive genic male sterility using AFLP, RFLP and SSR techniques.	Theor. Appl. Genet.	100	727-734	2000	TMS4	tms4(t), ms84, tms4(t)*, tgms-vn1
20557		Cai, H.-W. and H. Morishima	Genomic regions affecting seed shattering and seed dormancy in rice.	Theor. Appl. Genet.	100	840-846	2000	qSH-1-2(t) (qSHT-1),qSH-8-1(t) (qSHT-8),qSH-4-2(t) (qSHT-4),qDOR-2,qDOR-3-1,qDOR-3-2,qDOR-3-3,qDOR-5-1,qDOR-5-2,qDOR-6-1,qSH-11-1(t) (qSHT-11),qDOR-8,qDOR-9-1,qDOR-9-2,qDOR-6-2,qDOR-11-2,qDOR-11-1,qDOR-11-3,qDOR-11-4,qDOR-11-5,qDOR-11-6	qSH-1-2(t) (qSHT-1),qSH-8-1(t) (qSHT-8),qSH-4-2(t) (qSHT-4),qDOR-2,qDOR-3-1,qDOR-3-2,qDOR-3-3,qDOR-5-1,qDOR-5-2,qDOR-6-1,qSH-11-1(t) (qSHT-11),qDOR-8,qDOR-9-1,qDOR-9-2,qDOR-6-2,qDOR-11-2,qDOR-11-1,qDOR-11-3,qDOR-11-4,qDOR-11-5,qDOR-11-6
20558		Hittalmani, S., A. Parco, T.V. Mew, R.S. Zeigler and N. Huang	Fine mapping and DNA marker-assisted pyramiding of the three major genes for blast resistance in rice.	Theor. Appl. Genet.	100	1121-1128	2000	PI1,PI30,PITA,PIZ5,PIZ,PBR*	Pi1, Pi-1, Pi1-5C, Pi1-6C,Pi-30(t), Pi30(t),Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30, Trx30,Piz-5, Pi-z5, Piz5, Pi-2(t), Pi-2, Pi2,Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2,PBR*
20559		Tripathy, J.N., J. Zhang, S. Robin, T.T. Nguyen and H.T. Nguyen	QTLs for cell-membrane stability mapped in rice (Oryza sativa L.) under drought stress.	Theor. Appl. Genet.	100	1197-1202	2000	qCMS-3-1(t) (QCMS3.1),qCMS-7-1(t) (QCMS7.1),qCMS-8-1(t) (QCMS8.1),qCMS-8-2(t) (QCMS8.2),qCMS-9-1(t) (QCMS9.1),qCMS-9-2(t) (QCMS9.2),qCMS-11-1(t) (QCMS11.1),qCMS-12-1(t) (QCMS12.1),qCMS-1-1(t) (QCMS1.1)	qCMS-3-1(t) (QCMS3.1),qCMS-7-1(t) (QCMS7.1),qCMS-8-1(t) (QCMS8.1),qCMS-8-2(t) (QCMS8.2),qCMS-9-1(t) (QCMS9.1),qCMS-9-2(t) (QCMS9.2),qCMS-11-1(t) (QCMS11.1),qCMS-12-1(t) (QCMS12.1),qCMS-1-1(t) (QCMS1.1)
20560		Tu, J., K. Datta, G.S. Khush, Q. Zhang and S.K. Datta	Field performance of Xa21 transgenic indica rice (Oryza sativa L.), IR72.	Theor. Appl. Genet.	101	15-20	2000	XA21	Xa21*, Xa21, OsXA21
20561		Hayano-Saito, Y., K. Saito, S. Nakamura, S. Kawasaki and M. Iwasaki	Fine physical mapping of the rice stripe resistance gene locus, Stvb-i.	Theor. Appl. Genet.	101	59-63	2000	STVB	Stvb(St2), St2, Stvb, Stv2
20562		Li, J.X., S.B. Yu, C.G. Xu, Y.F. Tan, Y.J. Gao, X.H. Li and Qifa Zhang	Analyzing quantitative trait loci for yield using a vegetatively replicated F2 population from a cross between the parents of an elite rice hybrid.	Theor. Appl. Genet.	101	248-254	2000	qYD-7-1 (yd7a),qYD-8 (yd8),qYD-6 (yd6),qYD-7-2 (yd7b),qTP-1 (tp1),qTP-7-1 (tp7a),qTP-7-2 (tp7b),qGP-3 (gp3),qGP-5-1 (gp5a),qGP-7-1 (gp7a),qGP-1 (gp1),qGP-5-2 (gp5b),qGP-6 (gp6),qGP-7-2 (gp7b),qGW-3-1(t) (gw3),qGW-5-1(t) (gw5a),qGW-5-2(t) (gw5b),qGW-7-1(t) (gw7),qGW-11-1(t) (gw11)	qYD-7-1 (yd7a),qYD-8 (yd8),qYD-6 (yd6),qYD-7-2 (yd7b),qTP-1 (tp1),qTP-7-1 (tp7a),qTP-7-2 (tp7b),qGP-3 (gp3),qGP-5-1 (gp5a),qGP-7-1 (gp7a),qGP-1 (gp1),qGP-5-2 (gp5b),qGP-6 (gp6),qGP-7-2 (gp7b),qGW-3-1(t) (gw3),qGW-5-1(t) (gw5a),qGW-5-2(t) (gw5b),qGW-7-1(t) (gw7),qGW-11-1(t) (gw11)
20563		Tang, D., W. Wu, W. Li, H. Lu and A.J. Worland	Mapping of QTLs conferring resistance to bacterial leaf streak in rice.	Theor. Appl. Genet.	101	286-291	2000	qBLSR-1 (qBlsr1),qBLSR-2 (qBlsr2),qBLSR-3-1 (qBlsr3a),qBLSR-3-2 (qBlsr3b),qBLSR-3-3 (qBlsr3c),qBLSR-3-4 (qBlsr3d),qBLSR-4-1 (qBlsr4a),qBLSR-4-2 (qBlsr4b),qBLSR-5-2 (qBlsr5b),qBLSR-11 (qBlsr11),qBLSR-5-1 (qBlsr5a)	qBLSR-1 (qBlsr1),qBLSR-2 (qBlsr2),qBLSR-3-1 (qBlsr3a),qBLSR-3-2 (qBlsr3b),qBLSR-3-3 (qBlsr3c),qBLSR-3-4 (qBlsr3d),qBLSR-4-1 (qBlsr4a),qBLSR-4-2 (qBlsr4b),qBLSR-5-2 (qBlsr5b),qBLSR-11 (qBlsr11),qBLSR-5-1 (qBlsr5a)
20564		Garland, S., L. Lewin, A. Blakeney, R. Reinke and R. Henry	PCR-based molecular markers for the fragrance gene in rice (Oryza sativa L.).	Theor. Appl. Genet.	101	364-371	2000	SK2(T)(SCL, FGR)	sk2(t)(scl, fgr), fgr, scl, BAD2, BADH2, sk2, OsBADH2, Badh2, badh2, Os2AP, BADH-2, OsALDH10A8, ALDH10A8 
20565		Zou, J.H., X.B. Pan, Z.X. Chen, J.Y. Xu, J.F. Lu, W.X. Zhai and L.H. Zhu	Mapping quantitative trait loci controlling sheath blight resistance in two rice cultivars (Oryza sativa L.).	Theor. Appl. Genet.	101	569-573	2000	qSB-2,qSB-7,qSB-3,qSB-11,qSB-9-1,qSB-9-2,qHD-2(t)(qHD-2),qHD-3-1,qHD-5(t)(qHD-5),qHD-7-4(t)(qHD-7),qPH-3-1(t),qPH-4-1(t),qPH-11-1(t)	qSB-2,qSB-7,qSB-3,qSB-11,qSB-9-1,qSB-9-2,qHD-2(t)(qHD-2),qHD-3-1,qHD-3-1(t)(qHD-3),qHD-5(t)(qHD-5),qHD-7-4(t)(qHD-7),qPH-3-1(t),qPH-4-1(t),qPH-11-1(t)
20566		Lin, H.X., T. Yamamoto, T. Sasaki and M. Yano	Characterization and detection of epistatic interactions of 3 QTLs, Hd1, Hd2, and Hd3, controlling heading date in rice using nearly isogenic lines.	Theor. Appl. Genet.	101	1021-1028	2000	SE1,HD3A,HD2	Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, OsHd1,  Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,Hd2(t), Hd2, qHD2(t), OsPRR37, Os-PRR37, PRR37, Prr4, OsPRR4, DTH7, Os DTH7, OsCCT28, CCT28, Ghd7.1, PRR37/Hd2, EH7-2, EH7-2/Hd2, Hd2/PRR37, PRR37-1a, PRR37-1b, PRR37-1c, PRR37-2a, PRR37- 2, HD7.2
20567		Sripongpangkul, K., G.B.T. Posa, D.W. Senadhira, D. Brar, N. Huang, G.S. Khush and Z.K. Li	Genes/QTLs affecting flood tolerance in rice.	Theor. Appl. Genet.	101	1074-1081	2000	qINE-1(QIne1),SUB1,qINE-4(QIne4)	qINE-1(QIne1),Sub1, Sub1(Sub1A,Sub1B,Sub1C), Sub1A, Sub1B, Sub1C, Sub1,qINE-4(QIne4)
20568		Barlaan, E.A., H. Sato, J. Mushika, S. Taketa and M. Ichii	Molecular mapping of the cnx2 locus involved in molybdenum cofactor biosynthesis in rice (Oryza sativa L.).	Theor. Appl. Genet.	102	540-544	2001	CNX2	cnx2*, cnx2, cnx 2
20569		Huang, Z., G. He, L. Shu, X. Li and Q. Zhang	Identification and mapping of two brown planthopper resistance genes in rice.	Theor. Appl. Genet.	102	929-934	2001	BPH15,BPH14	RLCK134, OsRLCK134, OsLecRK1, LecRK1, SDRLK-LecRK1, OsSDRLK-LecRK1, OslecRK, lecRK, Bph15, OsBph15, Bph15 (Qbp2), Qbp2, qBPH-4,Bph14 (Qbp1), Bph14, Qbp1, qBPH-3
20571		Liu, Y.S., L.H. Zhu, J.S. Sun and Y. Chen	Mapping QTLs for defective female gametophyte development in an inter-subspecific cross in Oryza sativa L.	Theor. Appl. Genet.	102	1243-1251	2001	qESA-6 (esa-1),qESA-12-1 (esa-2),qESA-12-2 (esa-3)	qESA-6 (esa-1),qESA-12-1 (esa-2),qESA-12-2 (esa-3)
20572		Katiyar, S.K., Y. Tan, B. Huang, G. Chandel, Y. Xu, Y. Zhang, Z. Xie and J. Bennett	Molecular mapping of gene Gm6(t) which confers resistance against four biotypes of Asian rice gall midge in China.	Theor. Appl. Genet.	103	953-961	2001	GM6	Gm6(t), Gm6
20573		Zhang, J., H.G. Zheng, A. Aarti, G. Pantuwan, T.T. Nguyen, J.N. Tripathy, A.K. Sarial, S. Robin, R.C. Babu, Bay D. Nguyen, S. Sarkarung, A. Blum and H.T. Nguyen	Locating genomic regions associated with components of drought resistance in rice: comparative mapping within and across species.	Theor. Appl. Genet.	103	19-29	2001	qOA-1-1 (oa1.1),qOA-2-1 (oa2.1),qOA-3-1 (oa3.1),qOA-8-1 (oa8.1),qOA-9-1 (oa9.1),qRPI-3-1(rpi3.1),qRPI-12-1(rpi12.1),qBRT-2-1(brt2.1),qBRT-3-1(brt3.1),qBRT-4-1(brt4.1),qBRT-8-1(brt8.1),qBRT-9-1(brt9.1),qBRT-12-1(brt12.1),qPRT-1-1(prt1.1),qPRT-1-2(prt1.2),qPRT-2-1(prt2.1),qPRT-2-2(prt2.2),qPRT-4-1(prt4.1),qPRT-6-1(prt6.1),qPRT-7-1(prt7.1),qPRT-12-1(prt12.1),qPRT-12-2(prt12.2),qRPI-4-1(rpi4.1),qPRT-9-2(prt9.2),qRPI-4-2(rpi4.2),qPRT-9-1(prt9.1),qRPF-2-1(rpf2.1),qRPF-3-1(rpf3.1),qRPF-3-2(rpf3.2),qRPF-4-1(rpf4.1),qRPF-5-1(rpf5.1),qRPF-11-1(rpf11.1),qTRDW-1-1(trdw1.1),qTRDW-2-1(trdw2.1),qTRDW-4-1(trdw4.1),qTRDW-6-1(trdw6.1),qTRDW-10-1(trdw10.1),qPRDW-4-1(prdw4.1),qPRDW-9-1(prdw9.1),qPRL-11-1(prl11.1),qPRDW-12-1(prdw12.1)	qOA-1-1 (oa1.1),qOA-2-1 (oa2.1),qOA-3-1 (oa3.1),qOA-8-1 (oa8.1),qOA-9-1 (oa9.1),qRPI-3-1(rpi3.1),qRPI-12-1(rpi12.1),qBRT-2-1(brt2.1),qBRT-3-1(brt3.1),qBRT-4-1(brt4.1),qBRT-8-1(brt8.1),qBRT-9-1(brt9.1),qBRT-12-1(brt12.1),qPRT-1-1(prt1.1),qPRT-1-2(prt1.2),qPRT-2-1(prt2.1),qPRT-2-2(prt2.2),qPRT-4-1(prt4.1),qPRT-6-1(prt6.1),qPRT-7-1(prt7.1),qPRT-12-1(prt12.1),qPRT-12-2(prt12.2),qRPI-4-1(rpi4.1),qPRT-9-2(prt9.2),qRPI-4-2(rpi4.2),qPRT-9-1(prt9.1),qRPF-2-1(rpf2.1),qRPF-3-1(rpf3.1),qRPF-3-2(rpf3.2),qRPF-4-1(rpf4.1),qRPF-5-1(rpf5.1),qRPF-11-1(rpf11.1),qTRDW-1-1(trdw1.1),qTRDW-2-1(trdw2.1),qTRDW-4-1(trdw4.1),qTRDW-6-1(trdw6.1),qTRDW-10-1(trdw10.1),qPRDW-4-1(prdw4.1),qPRDW-9-1(prdw9.1),qPRL-11-1(prl11.1),qPRDW-12-1(prdw12.1)
20574	12582666	Yu, S.B., J.X. Li, C.G. Xu, Y.F. Tan, X.H. Li, Qifa Zhang	Identification of quantitative trait loci and epistatic interactions for plant height and heading date in rice.	Theor. Appl. Genet.	104	619-625	2002	qPH-1-1(t) (ph1),qPH-3-2(t) (ph3),qPH-5-1(t) (ph5a),qPH-5-2(t) (ph5b),qPH-7-1(t) (ph7),qHD-3-2,qHD-6,qHD-7-1(t)(hd7a),qHD-7-2(t)(hd7b),qHD-7-3(t)(hd7c),qHD-11-1(t)(hd11)	qPH-1-1(t) (ph1),qPH-3-2(t) (ph3),qPH-5-1(t) (ph5a),qPH-5-2(t) (ph5b),qPH-7-1(t) (ph7),qHD-3-2,qHD-3-2(t)(hd3),qHD-6,qHD-6(t)(hd6),qHD-7-1(t)(hd7a),qHD-7-2(t)(hd7b),qHD-7-3(t)(hd7c),qHD-11-1(t)(hd11)
20575		Fukuoka, S. and K. Okuno	QTL analysis and mapping of pi21, a recessive gene for field resistance to rice blast in Japanese upland rice.	Theor. Appl. Genet.	103	185-190	2001	PI21	pi21, rMg40, OsHMP26, HMP26, OsHIPP5, HIPP5, OsaHIP05, HIP05 
20576		Murai, H., Z. Hashimoto, P.N. Sharma, T. Shimizu, K. Murata, S. Takumi, N. Mori, S. Kawasaki, C. Nakamura	Construction of a high-resolution linkage map of a rice brown planthopper (Nilaparvata lugens Stal) resistance gene bph2.	Theor. Appl. Genet.	103	526-532	2001	BPH2	bph2
20577		Jia, J.H., D.S. Zhang, C.Y. Li, X.P. Qu, S.W. Wang, V. Chamarerk, H.T. Nguyen, B. Wang.	Molecular mapping of the reverse thermo-sensitive genic male-sterile gene (rtms1) in rice.	Theor. Appl. Genet.	103	607-612.	2001	RTMS1	rtms1, rtms1*
20578		Saito, K., K. Miura, K. Nagano, Y. Hayano-Saito, H. Araki, A. Kato	Identification of two closely linked quantitative trait loci for cold tolerance on chromosome 4 of rice and their association with anther length.	Theor. Appl. Genet.	103	862-868	2001	qCTB-4-1(t) (Ctb-1, Ctb1),qCTB-4-2(t) (Ctb-2)	qCTB-4-1(t) (Ctb-1, Ctb1),qCTB-4-2(t) (Ctb-2)
20579	12579422	Umemoto, T., M. Yano, H. Satoh, A. Shomura, Y. Nakamura	Mapping of a gene responsible for the difference in amylopectin structure between japonica-type and indica-type rice varieties.	Theor. Appl. Genet.	104	1-8	2002	ALK,GEL,ACL	alk, SSII-3, OsSSIIa, OsSSII-3, SSIIa, SSS2A, OsSSIIaChr6, SS2a,gel(t), gel,acl (t), acl(t), acl
20580	12582694	Xu, X.F., H.W. Mei, L.J. Luo, X.N. Cheng, Z.K. Li	RFLP-facilitated investigation of the quantitative resistance of rice to brown planthopper (Nilaparvata lugens).	Theor. Appl. Genet.	104	248-253	2002	qBPHR-1 (QBphr1),qBPHR-3 (QBphr3),qBPHR-5-1 (QBphr5a),qBPHR-5-2 (QBphr5b),qBPHR-8 (QBphr8),qBPHR-11-1 (QBphr11a),qBPHR-11-2 (QBphr11b)	qBPHR-1 (QBphr1),qBPHR-3 (QBphr3),qBPHR-5-1 (QBphr5a),qBPHR-5-2 (QBphr5b),qBPHR-8 (QBphr8),qBPHR-11-1 (QBphr11a),qBPHR-11-2 (QBphr11b)
20581	12582654	Cha, K.-W., Y.-J. Lee, H.-J. Koh, B.-M. Lee, Y.-W. Nam, N.-C. Paek	Isolation, characterization, and mapping of the stay green mutant in rice.	Theor. Appl. Genet.	104	526-532	2002	SGR	sgr(t), sgr, OsSGR, OsSgr, SGR1, OsSGR1
20582	12582636	Monna, L., H. Lin, S. Kojima, T. Sasaki, M. Yano	Genetic dissection of a genomic region for a quantitative trait locus, Hd3, into two loci, Hd3a and Hd3b, controlling heading date in rice.	Theor. Appl. Genet.	104	772-778	2002	HD3B,HD3A	Hd17, EF7, Ef7, OsELF3-1, ELF3-1, OsELF3, ELF3, ELF3_chr.6, OsELF3.1, ELF3.1, OsELF3a, ELF3a,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a 
20583	12582603	Miura, K., S. Lin, M. Yano and T. Nagamine	Mapping quantitative trait loci controlling seed longevity in rice (Oryza sativa L.)	Theor. Appl. Genet.	104	981-986	2002	qSD-1,qSD-3,qSD-5,qSD-7-1,qSD-11,qLG-2,qLG-4,qLG-9	qSD-1,qSD-3,qSD-5,qSD-7-1,qSD-11,qLG-2,qLG-4,qLG-9
20584	12582557	Zhang, J., Y. Xu, X. Wu, L. Zhu	A bentazon and sulfonylurea sensitive mutant: breeding, genetics and potential application in seed production of hybrid rice.	Theor. Appl. Genet.	105	16-22	2002	BEL	bel, bel-a(8077S), bel-b(=bsl, Norin8m), CYP81A6, OsCYP81A6, OsCYP81Q32, CYP81Q32, OsCYP71U8, CYP71U8
20586	12582477	Ahn, B., K. Miyoshi, J.-I. Itoh, Y. Nagato, N. Kurata	A genetic and physical map of the region containing PLASTOCHRON1, a heterochronic gene, in rice (Oryza sativa L.).	Theor. Appl. Genet.	105	654-659	2002	PLA1	pla1, OsPLA1, plt1, CYP78A11
20587	12582482	Sardesai, N., A. Kumar, K. Rajyashri, S. Nair, M. Mohan	Identification and mapping of an AFLP marker linked to Gm7, a gall midge resistance gene and its conversion to a SCAR marker for its utility in marker aided selection in rice.	Theor. Appl. Genet.	105	691-698	2002	GM7,GM2	Gm7*, Gm7,Gm2, Gm-2, GM-2
20588	12582488	Cui, K., S. Peng, Y. Xing, C. Xu, S. Yu, Q. Zhang	Molecular dissection of seedling-vigor and associated physiological traits in rice.	Theor. Appl. Genet.	105	745-753	2002	qGR-3-1 (qGR3-1),qGR-3-2 (qGR3-2),qGR-3-3 (qGR3-3),qGR-5-1 (qGR5-1),qGR-5-2 (qGR5-2),qGR-6-1 (qGR6-1),qGR-6-2 (qGR6-2),qGR-7-1 (qGR7-1),qTDW-1-1 (qTDW1-1),qTDW-1-2 (qTDW1-2),qTDW-3-1 (qTDW3-1),qTDW-5-1 (qTDW5-1),qTDW-5-2 (qTDW5-2),qTDW-6-1 (qTDW6-1),qTDW-6-2 (qTDW6-2),qTDW-9-1 (qTDW9-1),qSDW-1-1 (qSDW1-1),qSDW-3-1 (qSDW3-1),qSDW-5-1 (qSDW5-1),qSDW-5-2 (qSDW5-2),qSDW-6-1 (qSDW6-1),qSDW-6-2(qSDW6-2),qSDW-9-1 (qSDW9-1),qRDW-1-1 (qRDW1-1),qRDW-5-1 (qRDW5-1),qRDW-5-2 (qRDW5-2),qRDW-10-1 (qRDW10-1),qMRL-1-1 (qMRL1-1),qMRL-1-2 (qMRL1-2),qMRL-5-1 (qMRL5-1),qMRL-6-1 (qMRL6-1),qTAA-3-1 (qTAA3-1),qTAA-5-1 (qTAA5-1),qTAA-6-1 (qTAA6-1),qAAA-6-1(qAAA6-1),qAAA-6-2 (qAAA6-2),qRS-3-1 (qRS3-1),qRS-5-1 (qRS5-1),qRS-6-1 (qRS6-1),qRS-6-2 (qRS6-2),qRS-10-1 (qRS10-1),qRS-11-1 (qRS11-1),qRA-5-1 (qRA5-1),qRA-5-2 (qRA5-2),qRA-9-1 (qRA9-1),qSW-1-1 (qSW1-1),qSW-1-2 (qSW1-2),qSW-1-3 (qSW1-3),qSW-3-1 (qSW3-1),qSW-3-2 (qSW3-2),qSW-5-1 (qSW5-1),qSW-8-1 (qSW8-1),qSW-9-1 (qSW9-1),qSW-11-1 (qSW11-1),qAAA-6-1 (qAAA6-1),qRA-9-1 (qRA5-1)	qGR-3-1 (qGR3-1),qGR-3-2 (qGR3-2),qGR-3-3 (qGR3-3),qGR-5-1 (qGR5-1),qGR-5-2 (qGR5-2),qGR-6-1 (qGR6-1),qGR-6-2 (qGR6-2),qGR-7-1 (qGR7-1),qTDW-1-1 (qTDW1-1),qTDW-1-2 (qTDW1-2),qTDW-3-1 (qTDW3-1),qTDW-5-1 (qTDW5-1),qTDW-5-2 (qTDW5-2),qTDW-6-1 (qTDW6-1),qTDW-6-2 (qTDW6-2),qTDW-9-1 (qTDW9-1),qSDW-1-1 (qSDW1-1),qSDW-3-1 (qSDW3-1),qSDW-5-1 (qSDW5-1),qSDW-5-2 (qSDW5-2),qSDW-6-1 (qSDW6-1),qSDW-6-2(qSDW6-2),qSDW-9-1 (qSDW9-1),qRDW-1-1 (qRDW1-1),qRDW-5-1 (qRDW5-1),qRDW-5-2 (qRDW5-2),qRDW-10-1 (qRDW10-1),qMRL-1-1 (qMRL1-1),qMRL-1-2 (qMRL1-2),qMRL-5-1 (qMRL5-1),qMRL-6-1 (qMRL6-1),qTAA-3-1 (qTAA3-1),qTAA-5-1 (qTAA5-1),qTAA-6-1 (qTAA6-1),qAAA-6-1 (qAAA6-1),qAAA-6-2 (qAAA6-2),qRS-3-1 (qRS3-1),qRS-5-1 (qRS5-1),qRS-6-1 (qRS6-1),qRS-6-2 (qRS6-2),qRS-10-1 (qRS10-1),qRS-11-1 (qRS11-1),qRA-5-1 (qRA5-1),qRA-5-2 (qRA5-2),qRA-9-1 (qRA9-1),qSW-1-1 (qSW1-1),qSW-1-2 (qSW1-2),qSW-1-3 (qSW1-3),qSW-3-1 (qSW3-1),qSW-3-2 (qSW3-2),qSW-5-1 (qSW5-1),qSW-8-1 (qSW8-1),qSW-9-1 (qSW9-1),qSW-11-1 (qSW11-1),qAAA-6-1 (qAAA6-1),qRA-9-1 (qRA5-1)
20589	12582916	Kubo, T. and A. Yoshimura	Genetic basis of hybrid breakdown in a Japonica/Indica cross of rice, Oryza sativa L.	Theor. Appl. Genet.	105	906-911	2002	HWE2,HWE1	OsHWE2, OsEAF6/HWE2, OsEAF6, EAF6, HWS1, OsHWS1,hwe1(t)*, hwe1, OsHWE1, OsEAF6/HWE1, OsEAF6, EAF6, HWS2, OsHWS2
20590	12582891	Zhuang, J.Y., Y.Y. Fan, Z.M. Rao, J.L. Wu, Y.W. Xia, K.L. Zheng	Analysis on additive effects and additive-by-additive epistatic effects of QTLs for yield traits in a recombinant inbred line population of rice.	Theor. Appl. Genet.	105	1137-1145	2002	qTNSP-1-2 (TNSP-1-2),qTNSP-2-1 (TNSP-2-1),qTGWT-1-2 (TGWT-1-2),qTGWT-2-1(t) (TGWT-2-1),qTGWT-1-3 (TGWT-1-3),qGYD-1-1,qGYD-1-2,qGYD-6-1,qGYD-7-1,qGYD-7-2,qGYD-10,qNP-6-1 (NP-6),qNFGP-1-1,qNFGP-5-1,qNFGP-5-2,qNFGP-6,qNFGP-7-1,qNFGP-7-2,qTNSP-1-1,qTNSP-5,qNFGP-1-2,qNFGP-3-1,qTNSP-2-2,qTNSP-6,qTNSP-7,qTNSP-9,qSF-1(t),qSF-10-1(t),qTGWT-1-1,qTGWT-2-2(t),qTGWT-3-1(t),qTGWT-3-2(t),qTGWT-4-1(t) (qTGWT-4),qTGWT-5-1(t) (qTGWT-5),qTGWT-6-1(t) (qTGWT-6),qTGWT-10-1(t) (qTGWT-10),qGYD-2 (GYD-2),qGYD-6-2 (GDY-6-2),qGYD-7-3 (GYD-7-3),qNP-1-1 (NP-1),qNP-2-1 (NP-2-1),qNP-2-2 (NP-2-2),qNP-3-1 (NP-3-1),qNP-3-2 (NP-3-2),qNP-5-1 (NP-5),qNFGP-3-2 (NFGP-3-2),qNFGP-4 (NFGP-4)	qTNSP-1-2 (TNSP-1-2),qTNSP-2-1 (TNSP-2-1),qTGWT-1-2 (TGWT-1-2),qTGWT-2-1(t) (TGWT-2-1),qTGWT-1-3 (TGWT-1-3),qGYD-1-1,qGYD-1-2,qGYD-6-1,qGYD-7-1,qGYD-7-2,qGYD-10,qNP-6-1 (NP-6),qNFGP-1-1,qNFGP-5-1,qNFGP-5-2,qNFGP-6,qNFGP-7-1,qNFGP-7-2,qTNSP-1-1,qTNSP-5,qNFGP-1-2,qNFGP-3-1,qTNSP-2-2,qTNSP-6,qTNSP-7,qTNSP-9,qSF-1(t),qSF-10-1(t),qTGWT-1-1,qTGWT-2-2(t),qTGWT-3-1(t),qTGWT-3-2(t),qTGWT-4-1(t) (qTGWT-4),qTGWT-5-1(t) (qTGWT-5),qTGWT-6-1(t) (qTGWT-6),qTGWT-10-1(t) (qTGWT-10),qGYD-2 (GYD-2),qGYD-6-2 (GDY-6-2),qGYD-7-3 (GYD-7-3),qNP-1-1 (NP-1),qNP-2-1 (NP-2-1),qNP-2-2 (NP-2-2),qNP-3-1 (NP-3-1),qNP-3-2 (NP-3-2),qNP-5-1 (NP-5),qNFGP-3-2 (NFGP-3-2),qNFGP-4 (NFGP-4)
20591	12582854	Che, K., Q. Zhan, Q. Xing, Z. Wang, D. Jin, D. He, B. Wang	Tagging and mapping of rice sheath blight resistant gene.	Theor. Appl. Genet.	106	293-297	2003	RSB1	Rsb1, Rsb1*, RRS3
20592	12595985	Bay D. Nguyen, Darshan S. Brar, Buu C. Bui, Tao V. Nguyen Luong N. Pham, Henry T. Nguyen	Identification and mapping of the QTL for aluminum tolerance introgressed from the new source, ORYZA RUFIPOGON Griff., into indica rice (Oryza sativa L.).	Theor. Appl. Genet.	106	583-593	2003	qALCR-12-1 (QAlCr12.1),qALSR-2-1 (QAlSr2.1),qALSR-3-1 (QAlSr3.1),qALSR-8-1 (QAlSr8.1),qALRR-1-1 (QAlRr1.1),qALRR-3-1 (QAlRr3.1),qALRR-7-1 (QAlRr7.1),qALRR-8-1 (QAlRr8.1),qALRR-9-1 (QAlRr9.1)	qALCR-12-1 (QAlCr12.1),qALSR-2-1 (QAlSr2.1),qALSR-3-1 (QAlSr3.1),qALSR-8-1 (QAlSr8.1),qALRR-1-1 (QAlRr1.1),qALRR-3-1 (QAlRr3.1),qALRR-7-1 (QAlRr7.1),qALRR-8-1 (QAlRr8.1),qALRR-9-1 (QAlRr9.1)
20593	12647052	Sallaud, C., M. Lorieux, E. Roumen, D Tharreau, R. Berruyer, P. Svestasrani, O. Garsmeur, A. Ghesquiere, J.L. Nottenghem	Identification of five new blast resistance genes in the highly blast-resistant rice variety IR64 using a QTL mapping strategy.	Theor. Appl. Genet.	106	794-803	2003	PI9,PIM,PI1,PI18,PI33,PI,PITA,PI17,PIZ,PI23,PI6,PI8,PI30,PI10,PI22,PIKUR1,PILM2,PIF,PITQ6,PII,PIT,PISH,PIK,PIB,PI11,PI21,PI25,PI24,PI27,PI26,PI28,PI12,PI7,PITQ5,PI29,PII2,PIA,PIQ1,PI157,PI31,PI32	Pi9(t), Pi9(t)*, Pi9, Pi-9(t),Pi-m, Pik-m(Pi m), Pik-m, Pi m, Pi-km,Pi1, Pi-1, Pi1-5C, Pi1-6C,Pi18(t)*, Pi18(t), Pi18, Pi-18(t), Pi-18,Pi33(t), RMg70, Pi-33(t), Pi-33, Pi33,Pi(t)*, Pi(t),Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30, Trx30,Pi17(t), Pi17, Pi-17(t),Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2,Pi23(t)*, Pi23(t), Pi23, RMg43, Pi-23(t),Pi6(t)*, Pi6, Pi-6(t), pi6(t),Pi8, Pi-8,Pi-30(t), Pi30(t),Pi10(t)*, Pi10, Pi-10t, Pi-10, Pi-10(t),Pi22(t)*, Pi22, RMg42, pi22(t), Pi-22(t),Pi kur1*, PIKUR1, Pikur1*, Pikur1, RMg9, Pi-kur 1, Pi-kur1,Pi-lm2, Pilm2, Pi lm2, Pib2,Pi f, PIF, Pif, RMg3, Pi-f,Pi-tq6, Pitq6,Pi i, Pii, Pi-i, Pii(t),Pit, Pit(K59), Pit(Npb), Pi-t, PitNpb, PitK59, Pit1, OsPit1,Pi sh, Pish, Pi-sh, Pish(t),Pik, RMg8, Pi-k, Pik-2, Pik-1, Pik1, Pik2, Pik-H4, Pikp-1, Pikh-1, Pik1-H4, Pikh-2, Pik2-H4,Pi b(Pi s), Pis, Pib, Pi-s, Pi-hy,Pi11(t)*(Pi zh), Pi11(t)*, Pizh, Pi-zh, Pi-zh*, Pi-zh(t), Pi-11(t), Pi-11, Pi11,Pi21(t)*, Pi21, RMg41, Pi-21(t), Pi21(t),Pi25(t), Pi-25(t),Pi24(t), Pi-24(t), Pi-24, Pi24,Pi27(t), Pi-27(t),Pi26(t), Pi-26(t),Pi28(t), Pi-28(t),Pi12(t), Pi12(t)*, Pi12, Pi-12(t) ,Pi7, Pi-7(t), Pi7(t),Pitq5*, Pi-tq5, Pi-tq5, Pitq-5, Pitq5,Pi-29(t), Pi29(t),Pi i2, Pii2, Pii2(t),Pi a, Pia, Pi-a, Pia-1, Pia-2,Piq1*, Pitq1*, Pitq1, Pi-tq1, Pitq-1,Pi157*, Pi157(t)*, Pi-157, Pi157,Pi-31(t), Pi31(t)*, Pi31(t),Pi-32(t), Pi32(t)*, Pi32(t)
20594	12671757	Andaya, V. and D. Mackill	QTLs conferring cold tolerance at the booting stage of rice using recombinant inbred lines from a japonica x indica cross.	Theor. Appl. Genet.	106	1084-1090	2003	qCTB-2-1(t) (qCTB2a),qCTB-9(t) (qCTB9),qCTB-1(t)  (qCTB1),qCTB-2-2(t) (qCTB2b),qCTB-3(t) (qCTB3),qCTB-5(t) (qCTB5),qCTB-6 (t) (qCTL6),qCTB-7(t) (qCTB7),qCTB-12(t) (qCTB12)	qCTB-2-1(t) (qCTB2a),qCTB-9(t) (qCTB9),qCTB-1(t)  (qCTB1),qCTB-2-2(t) (qCTB2b),qCTB-3(t) (qCTB3),qCTB-5(t) (qCTB5),qCTB-6 (t) (qCTL6),qCTB-7(t) (qCTB7),qCTB-12(t) (qCTB12)
20595	12595998	Sun, X., Z. Yang, S. Wang, Q. Zhang	Identification of a 47-kb DNA fragment containing Xa4, a locus for bacterial blight resistance in rice.	Theor. Appl. Genet.	106	683-687.	2003	XA4	Xa4, Xa4(Xa4a), Xa-4, Xa4-a, WAK, wak, xa4
20596	12750790	Yang, Z., X. Sun, S. Wang, Q. Zhang	Genetic and physical mapping of a new gene for bacterial blight resistance in rice.	Theor. Appl. Genet.	106	1467-1472	2003	XA3	Xa-3, Xa3 (Xa4b, Xa6, Xa9, Xa w), Xa3, Xaw, Xa6, Xa9, Xa4-b, XA26, Xa26(t), Xa26(t)*, Xa26, RKb, MRKb, MRKB, TRKb, Xa3/Xa26
20598	12835929	Qu, L.Q., X.L. Wei, H. Satoh, T. Kumamaru, M. Ogawa, F. Takaiwa	Biochemical and molecular characterization of a rice glutelin allele for the GluA-1 gene.	Theor. Appl. Genet.	107	20-25	2003	GLU4	glu4a
20600	12721635	Mei, H.W., L.J. Luo, C.S. Ying, Y.P. Wang, X.Q. Yu, L.B. Guo, A.H. Paterson, Z.K. Li	Gene actions of QTLs affecting several agronomic traits resolved in a recombinant inbred rice population and two testcross populations.	Theor. Appl. Genet.	107	89-101	2003	qHD-3-3(t) (QHd3),qHD-4(t)(QHd4),qHD-7-5(t)(QHd7),qHD-8-1(t) (QHd8),qHD-11-2(t)(QHd11),qHD-12-1(t)(QHd12),qPH-3-3(t) (QPh3a),qPH-3-4(t) (QPh3b, QPh3a),qPH-4-2(t) (QPh4),qPH-6-1(t) (QPh6),qPH-8-1(t) (QPh8),qFLL-2-1(t) (QFll2),qFLL-3-1(t) (QFll3),qFLW-1-1(t) (QFlw1),qFLW-4-1(t) (QFlw4),qFLW-6-1(t) (QFlw6),qFLW-8-1(t) (QFlw8),qFLW-12-1(t) (QFlw12),qPL-2-1(t) (QPl2),qPL-8-1(t) (QPl8),qPL-10-1(t) (QPl10),qSN-1-1(t) (QSn1),qSN-6-1(t) (QSn6),qSN-3-1(t) (QSn3),qSN-11-1(t) (QSn11),qSF-3-1(t) (QSf3),qSF-5-1(t) (QSf5),qSF-6-1(t) (QSf6),qSF-7-1(t) (QSf7),qSF-8-1(t) (QSf8),qSF-10-2(t) (QSf10),qSF-11-1(t) (QSf11)	qHD-3-3(t) (QHd3),qHD-4(t)(QHd4),qHD-7-5(t)(QHd7),qHD-8-1(t) (QHd8),qHD-11-2(t)(QHd11),qHD-12-1(t)(QHd12),qPH-3-3(t) (QPh3a),qPH-3-4(t) (QPh3b, QPh3a),qPH-4-2(t) (QPh4),qPH-6-1(t) (QPh6),qPH-8-1(t) (QPh8),qFLL-2-1(t) (QFll2),qFLL-3-1(t) (QFll3),qFLW-1-1(t) (QFlw1),qFLW-4-1(t) (QFlw4),qFLW-6-1(t) (QFlw6),qFLW-8-1(t) (QFlw8),qFLW-12-1(t) (QFlw12),qPL-2-1(t) (QPl2),qPL-8-1(t) (QPl8),qPL-10-1(t) (QPl10),qSN-1-1(t) (QSn1),qSN-6-1(t) (QSn6),qSN-3-1(t) (QSn3),qSN-11-1(t) (QSn11),qSF-3-1(t) (QSf3),qSF-5-1(t) (QSf5),qSF-6-1(t) (QSf6),qSF-7-1(t) (QSf7),qSF-8-1(t) (QSf8),qSF-10-2(t) (QSf10),qSF-11-1(t) (QSf11)
20602	12736777	Thomson, M.J., T.H. Tai, A.M. McClung, X.H. Lai, M.E. Hinga, K.B. Lobos, Y. Xu, C.P. Martinez, S.R. McCouch	Mapping quantitative trait loci for yield, yield components and morphological traits in an advanced backcross population between Oryza rufipogon and the Oryza sativa cultivar Jefferson.	Theor. Appl. Genet.	107	479-493	2003	qGPP-1-2(t) (gpp1.1),qGPP-1-2(t) (gpp11.1),qGPP-1-2(t) (gpp9.1),qSH-3-2(t) (sh3.1),qSH-4-3(t) (sh4.1),qSH-3-3(t) (sh3.2),qSH-7-1(t) (sh7.1),qSH-8-2(t) (sh8.1),qGRM-1-1(t) (grm1.1),qGRM-4-1(t) (grm4.1),qGRM-6-1(t) (grm6.1),qAWN-8-1(t) (awn8.1),qTT-2-1(t) (tt2.1),qAWN-4-1(t) (awn4.1),qTT-9-1(t) (tt9.1),qTT-5-1(t) (tt5.1),qPH-4-3(t) (ph4.1),qPH-5-3(t) (ph5.1),qPH-8-2(t) (ph8.1),qPH-12-1(t) (ph12.1),qDTH-1-2(t)(dth1.1),qDTH-1-3(t)(dth1.2),qDTH-2-3(t)(dth2.1),qDTH-3-2(t)(dth3.1),qDTH-3-3(t)(dth3.2),qDTH-3-4(t)(dth3.3),qDTH-3-5(t)(dth3.4),qDTH-4-3(t)(dth4.1),qDTH-4-4(t)(dth4.2),qDTH-7-1,qDTH-10-1(t)(dth10.1),qGPP-1-2(t) (gpp1.2),qGPP-2-1(t) (gpp2.1),qGPP-3-1(t) (gpp3.1),qGPP-4-1(t) (gpp4.1),qGPP-8-1(t) (gpp8.1),qGPP-9-1(t) (gpp9.1),qGPP-11-1(t) (gpp11.1),qGPP-12-1(t) (gpp12.1),qGPP-12-2(t) (gpp12.2),qSPP-1-2(t)(spp1.2),qSPP-1-1(t)(spp1.1),qSPP-2-1(t)(spp2.1),qSPP-3-1(t)(spp3.1),qSPP-9-1(t)(spp9.1),qSPP-12-1(t)(spp12.1),qPL-1-1(t) (pl1.1),qPL-2-2(t) (pl2.1),qPL-4-1(t) (pl4.1),qPL-9-1(t) (pl9.1),qPL-10-2(t) (pl10.1),qPL-12-1(t) (pl12.1),qPSS-1-1(t) (pss1.1),qPSS-3-1(t) (pss3.1),qPSS-4-1(t) (pss4.1),qPSS-5-1(t) (pss5.1),qPSS-6-1(t) (pss6.1),qPSS-5-2(t) (pss5.2),qPSS-10-1(t) (pss10.1),qGW-1-1(t) (gw1.1),qGW-2-1(t) (gw2.1),qGW-3-2(t) (gw3.1),qGW-3-3(t) (gw3.2),qGW-5-3(t) (gw5.1),qGW-9-1(t) (gw9.1),qGW-10-1(t) (gw10.1),qGW-12-1(t) (gw12.1),qPPL-3-1(t) (ppl3.1),qPPL-7-1(t) (ppl7.1),qYLD-2-1(t) (yld2.1),qYLD-3-1(t) (yld3.1),qYLD-3-2(t) (yld3.2),qYLD-6-1(t) (yld6.1),qYLD-9-1(t) (yld9.1),qPH-1-2(t) (ph1.1),qPH-1-3(t) (ph1.2),qSH-1-3(t) (sh1.1),qGPP-1-2(t) (gpp4.1),qGPP-1-2(t) (gpp8.1),qGPP-1-2(t) (gpp3.1),qGPP-1-2(t) (gpp2.1),qGPP-1-2(t) (gpp12.2),qGPP-1-2(t) (gpp12.1)	qGPP-1-2(t) (gpp1.1),qGPP-1-2(t) (gpp11.1),qGPP-1-2(t) (gpp9.1),qSH-3-2(t) (sh3.1),qSH-4-3(t) (sh4.1),qSH-3-3(t) (sh3.2),qSH-7-1(t) (sh7.1),qSH-8-2(t) (sh8.1),qGRM-1-1(t) (grm1.1),qGRM-4-1(t) (grm4.1),qGRM-6-1(t) (grm6.1),qAWN-8-1(t) (awn8.1),qTT-2-1(t) (tt2.1),qAWN-4-1(t) (awn4.1),qTT-9-1(t) (tt9.1),qTT-5-1(t) (tt5.1),qPH-4-3(t) (ph4.1),qPH-5-3(t) (ph5.1),qPH-8-2(t) (ph8.1),qPH-12-1(t) (ph12.1),qDTH-1-2(t)(dth1.1),qDTH-1-3(t)(dth1.2),qDTH-2-3(t)(dth2.1),qDTH-3-2(t)(dth3.1),qDTH-3-3(t)(dth3.2),qDTH-3-4(t)(dth3.3),qDTH-3-5(t)(dth3.4),qDTH-4-3(t)(dth4.1),qDTH-4-4(t)(dth4.2),qDTH-7-1,qDTH-7-1(t)(dth7.1),qDTH-10-1(t)(dth10.1),qGPP-1-2(t) (gpp1.2),qGPP-2-1(t) (gpp2.1),qGPP-3-1(t) (gpp3.1),qGPP-4-1(t) (gpp4.1),qGPP-8-1(t) (gpp8.1),qGPP-9-1(t) (gpp9.1),qGPP-11-1(t) (gpp11.1),qGPP-12-1(t) (gpp12.1),qGPP-12-2(t) (gpp12.2),qSPP-1-2(t)(spp1.2),qSPP-1-1(t)(spp1.1),qSPP-2-1(t)(spp2.1),qSPP-3-1(t)(spp3.1),qSPP-9-1(t)(spp9.1),qSPP-12-1(t)(spp12.1),qPL-1-1(t) (pl1.1),qPL-2-2(t) (pl2.1),qPL-4-1(t) (pl4.1),qPL-9-1(t) (pl9.1),qPL-10-2(t) (pl10.1),qPL-12-1(t) (pl12.1),qPSS-1-1(t) (pss1.1),qPSS-3-1(t) (pss3.1),qPSS-4-1(t) (pss4.1),qPSS-5-1(t) (pss5.1),qPSS-6-1(t) (pss6.1),qPSS-5-2(t) (pss5.2),qPSS-10-1(t) (pss10.1),qGW-1-1(t) (gw1.1),qGW-2-1(t) (gw2.1),qGW-3-2(t) (gw3.1),qGW-3-3(t) (gw3.2),qGW-5-3(t) (gw5.1),qGW-9-1(t) (gw9.1),qGW-10-1(t) (gw10.1),qGW-12-1(t) (gw12.1),qPPL-3-1(t) (ppl3.1),qPPL-7-1(t) (ppl7.1),qYLD-2-1(t) (yld2.1),qYLD-3-1(t) (yld3.1),qYLD-3-2(t) (yld3.2),qYLD-6-1(t) (yld6.1),qYLD-9-1(t) (yld9.1),qPH-1-2(t) (ph1.1),qPH-1-3(t) (ph1.2),qSH-1-3(t) (sh1.1),qGPP-1-2(t) (gpp4.1),qGPP-1-2(t) (gpp8.1),qGPP-1-2(t) (gpp3.1),qGPP-1-2(t) (gpp2.1),qGPP-1-2(t) (gpp12.2),qGPP-1-2(t) (gpp12.1)
20603	12734656	Sato, Y. and T. Nishio	Mutation detection in rice waxy mutants by PCR-RF-SSCP.	Theor. Appl. Genet.	107	560-567	2003	WX1	wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx
20604	12920521	Hittalmani, S., N. Huang, B. Courtois, R. Venuprasad, H.E. Shashidhar, J.Y. Zhuang, K.L.Zheng, G.F. Liu, G.C. Wang, J.S. Sidhu, S. Srivantaneeyakul, V.P. Singh, P.G. Bagali, H.C. Prasanna, G. McLaren and G.S. Khush	Identification of QTL for growth- and grain yield-related traits in rice across nine locations of Asia.	Theor. Appl. Genet.	107	679-690	2003	qHID-1-2(t) (qHID1-1),qYLD-9-2(t) (qYLD9-1),qYLD-4-1(t) (qYLD4-1),qYLD-10-1(t) (qYLD10-1),qBMS-1-1(t) (qBMS1-1),qBMS-1-2(t) (qBMS1-2),qBMS-3-1(t) (qBMS3-1),qBMS-7-1(t) (qBMS7-1),qBMS-7-2(t) (qBMS7-2),qFRP-4-1(t) (qFRP4-1),qHDD-1-1(t)(qHDD1-1),qHDD-3-1(t)(qHDD3-1),qHDD-3-2(t)(qHDD3-2),qHDD-4-1(t)(qHDD4-1),qBMS-4-1(t) (qBMS4-1),qHDD-8-1(t)(qHDD8-1),qHDD-9-1(t)(qHDD9-1),qHID-1-1(t) (qHID1-1),qHDD-7-1(t)(qHDD7-1),qHID-3-1(t) (qHID3-1),qHID-1-2(t) (qHID1-2),qHID-3-2(t) (qHID3-2),qHID-4-1(t) (qHID4-1),qHID-4-2(t) (qHID4-2),qHID-4-3(t) (qHID4-3),qHID-7-1(t) (qHID7-1),qHID-7-2(t) (qHID7-2),qHID-8-1(t) (qHID8-1),qHID-8-2(t) (qHID8-2),qNOP-1-1(t) (qNOP1-1),qNOP-3-1(t) (qNOP3-1),qNOP-4-1(t) (qNOP4-1),qNOP-4-2(t) (qNOP4-2),qNOP-12-1(t) (qNOP12-1),qNOP-12-2(t) (qNOP12-2),qNOS-4-1(t)(qNOS4-1),qNOS-1-1(t)(qNOS1-1),qNOS-4-2(t)(qNOS4-2),qNOS-4-3(t)(qNOS4-3),qNOS-7-1(t)(qNOS7-1),qNOS-4-4(t)(qNOS4-4),qPEN-1-1(t)(qPEN1-1),qPEN-4-1(t)(qPEN4-1),qPEN-8-1(t)(qPEN8-1),qPH-1-4(t) (qPHT1-1),qPH-3-5(t) (qPHT3-1),qPH-3-6(t) (qPHT3-2),qPH-7-2(t) (qPHT7-1),qPL-1-2(t) (qPLT1-1),qPL-3-1(t) (qPLT3-1),qPL-3-2(t) (qPLT3-2),qPL-3-3(t) (qPLT3-3),qPL-4-2(t) (qPLT4-1),qPL-6-1(t) (qPLT6-1),qPL-7-1(t) (qPLT7-1),qPL-10-3(t) (qPLT10-1),qTGWT-1-4(t) (qTGW1-1),qTGWT-1-5(t) (qTGW1-2),qTGWT-1-6(t) (qTGW1-3),qTGWT-3-3(t) (qTGW3-1),qTGWT-3-4(t) (qTGW3-2),qTGWT-3-5(t) (qTGW3-3),qTGWT-6-2(t) (qTGW6-1),qTGWT-10-2(t) (qTGW10-1),qTGWT-10-3(t) (qTGW10-2),qTGWT-10-4(t) (qTGW10-3),qHID-4-3(t) (qHID1-1),qHID-7-1(t) (qHID1-1),qHID-8-1(t) (qHID1-1),qHID-8-2(t) (qHID1-1),qNOP-4-1(t) (qNOP1-1),qNOP-3-1(t) (qNOP1-1),qNOP-4-2(t) (qNOP1-1),qPPL-11-1(t) (ppl12.1),qNOP-12-1(t) (qNOP1-1),qNOP-12-2(t) (qNOP1-1),qPH-7-1(t) (qPHT1-1),qHID-3-2(t) (qHID1-1),qHID-3-1(t) (qHID1-1)	qHID-1-2(t) (qHID1-1),qYLD-9-2(t) (qYLD9-1),qYLD-4-1(t) (qYLD4-1),qYLD-10-1(t) (qYLD10-1),qBMS-1-1(t) (qBMS1-1),qBMS-1-2(t) (qBMS1-2),qBMS-3-1(t) (qBMS3-1),qBMS-7-1(t) (qBMS7-1),qBMS-7-2(t) (qBMS7-2),qFRP-4-1(t) (qFRP4-1),qHDD-1-1(t)(qHDD1-1),qHDD-3-1(t)(qHDD3-1),qHDD-3-2(t)(qHDD3-2),qHDD-4-1(t)(qHDD4-1),qBMS-4-1(t) (qBMS4-1),qHDD-8-1(t)(qHDD8-1),qHDD-9-1(t)(qHDD9-1),qHID-1-1(t) (qHID1-1),qHDD-7-1(t)(qHDD7-1),qHID-3-1(t) (qHID3-1),qHID-1-2(t) (qHID1-2),qHID-3-2(t) (qHID3-2),qHID-4-1(t) (qHID4-1),qHID-4-2(t) (qHID4-2),qHID-4-3(t) (qHID4-3),qHID-7-1(t) (qHID7-1),qHID-7-2(t) (qHID7-2),qHID-8-1(t) (qHID8-1),qHID-8-2(t) (qHID8-2),qNOP-1-1(t) (qNOP1-1),qNOP-3-1(t) (qNOP3-1),qNOP-4-1(t) (qNOP4-1),qNOP-4-2(t) (qNOP4-2),qNOP-12-1(t) (qNOP12-1),qNOP-12-2(t) (qNOP12-2),qNOS-4-1(t)(qNOS4-1),qNOS-1-1(t)(qNOS1-1),qNOS-4-2(t)(qNOS4-2),qNOS-4-3(t)(qNOS4-3),qNOS-7-1(t)(qNOS7-1),qNOS-4-4(t)(qNOS4-4),qPEN-1-1(t)(qPEN1-1),qPEN-4-1(t)(qPEN4-1),qPEN-8-1(t)(qPEN8-1),qPH-1-4(t) (qPHT1-1),qPH-3-5(t) (qPHT3-1),qPH-3-6(t) (qPHT3-2),qPH-7-2(t) (qPHT7-1),qPL-1-2(t) (qPLT1-1),qPL-3-1(t) (qPLT3-1),qPL-3-2(t) (qPLT3-2),qPL-3-3(t) (qPLT3-3),qPL-4-2(t) (qPLT4-1),qPL-6-1(t) (qPLT6-1),qPL-7-1(t) (qPLT7-1),qPL-10-3(t) (qPLT10-1),qTGWT-1-4(t) (qTGW1-1),qTGWT-1-5(t) (qTGW1-2),qTGWT-1-6(t) (qTGW1-3),qTGWT-3-3(t) (qTGW3-1),qTGWT-3-4(t) (qTGW3-2),qTGWT-3-5(t) (qTGW3-3),qTGWT-6-2(t) (qTGW6-1),qTGWT-10-2(t) (qTGW10-1),qTGWT-10-3(t) (qTGW10-2),qTGWT-10-4(t) (qTGW10-3),qHID-4-3(t) (qHID1-1),qHID-7-1(t) (qHID1-1),qHID-8-1(t) (qHID1-1),qHID-8-2(t) (qHID1-1),qNOP-4-1(t) (qNOP1-1),qNOP-3-1(t) (qNOP1-1),qNOP-4-2(t) (qNOP1-1),qPPL-11-1(t) (ppl12.1),qNOP-12-1(t) (qNOP1-1),qNOP-12-2(t) (qNOP1-1),qPH-7-1(t) (qPHT1-1),qHID-3-2(t) (qHID1-1),qHID-3-1(t) (qHID1-1)
20605	12721640	Lorieux, M., G. Reversat, S.X. Garcia Diaz, C. Denance, N. Jouvenet, Y. Orieux, N. Bourger, A. Pando-Bahuon, A. Ghesquiere	Linkage mapping of Hsa-1_og, a resistance gene of African rice to the cyst nematode, Heterodera sacchari.	Theor. Appl. Genet.	107	691-696	2003	HSA-1_OG	Hsa-1_og, Hsa-1Og, Hsa-1(Og)
20606	12827251	Wang, Y.G., Q.H. Xing, Q.Y. Deng, F.S. Liang, L.P. Yuan, M.L. Wang, and B. Wang	Fine mapping of the rice thermo-sensitive genic male-sterile gene tms5.	Theor. Appl. Genet.	107	917-921	2003	TMS5	tms5, NAC18, ONAC023, ONAC23, NAC23, TMS5/ONAC023, OsEnS-30
20607	12955204	Conaway-Bormans, C.A., M.A. Marchetti, C.W. Johnson, A.M. McClung and W.D. Park	Molecular markers linked to the blast resistance gene Pi-z in rice for use in marker-assisted selection.	Theor. Appl. Genet.	107	1014-1020	2003	PIZ,PIZ5	Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2,Piz-5, Pi-z5, Piz5, Pi-2(t), Pi-2, Pi2
20608	12838393	Berruyer, R., H. Adreit, J. Milazzo, S. Gaillard, A. Berger, W. Dioh, M.H. Lebrun and D. Tharreau	Identification and fine mapping of Pi33, the rice resistance gene corresponding to the Magnaporthe grisea avirulence gene ACE1.	Theor. Appl. Genet.	107	1139-1147	2003	PI11,PI29,PI33	Pi11(t)*(Pi zh), Pi11(t)*, Pizh, Pi-zh, Pi-zh*, Pi-zh(t), Pi-11(t), Pi-11, Pi11,Pi-29(t), Pi29(t),Pi33(t), RMg70, Pi-33(t), Pi-33, Pi33
20609	12898024	Takeuchi, Y., S.Y. Lin, T. Sasaki and M. Yano	Fine linkage mapping enables dissection of closely linked quantitative trait loci for seed dormancy and heading in rice.	Theor. Appl. Genet.	107	1174-1180	2003	SDR1,qHD8(t)	Sdr1*, Sdr1,Hd8(t)
20610	14513215	Septiningsih, E.M., J. Prasetiyono, E. Lubis, T.H. Tai, T. Tjubaryat, S. Moeljopawiro and S.R. McCouch	Identification of quantitative trait loci for yield and yield components in an advanced backcross population derived from the Oryza sativa variety IR64 and the wild relative O. rufipogon.	Theor. Appl. Genet.	107	1419-1432	2003	qDTM-8-1(t) (dtm4.1),qGPP-1-1(t) (gpp1,1),qDTM-4-2(t) (dtm4.1),qDTM-7-1(t) (dtm4.1),qYLD-2-2(t) (yld2.1),qDTH-2-4(t)(dth2.1),qDTH-2-5(t)(dth2.2),qDTH-7-2,qDTH-7-3(t)(dth7.2),qDTH-11-3(t)(dth11.1),qDTH-12-2(t)(dth12.1),qDTM-4-1(t) (dtm4.1),qDTM-4-2(t) (dtm4.2),qDTM-7-1(t) (dtm7.1),qDTM-8-1(t) (dtm8.1),qPH-1-5(t) (ph1.1),qPH-6-2(t) (ph6.1),qPH-4-4(t) (ph4.1),qPH-10-1(t) (ph10.1),qPH-11-2(t) (ph11.1),qPL-1-3(t) (pl1.1),qPL-3-4(t) (pl3.1),qPL-9-2(t) (pl9.1),qPL-10-4(t) (pl10.1),qPL-10-5(t) (pl10.2),qPPL-1-1(t) (ppl1.1),qPPL-1-2(t) (ppl1.2),qPPL-2-1(t) (ppl2.1),qPPL-11-1(t) (ppl11.1),qPPL-11-2(t) (ppl11.2),qGPP-2-2(t) (gpp2.1),qGPP-3-2(t) (gpp3.1),qSPP-3-2(t)(spp3.1),qPSS-1-2(t) (pss1.1),qPSS-2-1(t) (pss2.1),qPSS-11-1(t) (pss11.1),qGPL-1-1(t) (gpl1.1),qGPL-2-1(t) (gpl2.1),qGPL-12-1(t) (gpl12.1),qGW-1-2(t) (gw1.1),qGW-2-2(t) (gw2.1),qGW-3-4(t) (gw3.1),qGW-3-5(t) (gw3.2),qGW-7-2(t) (gw7.1),qYLD-1-1(t) (yld1.1),qYLD-1-2(t) (yld1.2)	qDTM-8-1(t) (dtm4.1),qGPP-1-1(t) (gpp1,1),qDTM-4-2(t) (dtm4.1),qDTM-7-1(t) (dtm4.1),qYLD-2-2(t) (yld2.1),qDTH-2-4(t)(dth2.1),qDTH-2-5(t)(dth2.2),qDTH-7-2,qDTH-7-2(t)(dth7.1),qDTH-7-3(t)(dth7.2),qDTH-11-3(t)(dth11.1),qDTH-12-2(t)(dth12.1),qDTM-4-1(t) (dtm4.1),qDTM-4-2(t) (dtm4.2),qDTM-7-1(t) (dtm7.1),qDTM-8-1(t) (dtm8.1),qPH-1-5(t) (ph1.1),qPH-6-2(t) (ph6.1),qPH-4-4(t) (ph4.1),qPH-10-1(t) (ph10.1),qPH-11-2(t) (ph11.1),qPL-1-3(t) (pl1.1),qPL-3-4(t) (pl3.1),qPL-9-2(t) (pl9.1),qPL-10-4(t) (pl10.1),qPL-10-5(t) (pl10.2),qPPL-1-1(t) (ppl1.1),qPPL-1-2(t) (ppl1.2),qPPL-2-1(t) (ppl2.1),qPPL-11-1(t) (ppl11.1),qPPL-11-2(t) (ppl11.2),qGPP-2-2(t) (gpp2.1),qGPP-3-2(t) (gpp3.1),qSPP-3-2(t)(spp3.1),qPSS-1-2(t) (pss1.1),qPSS-2-1(t) (pss2.1),qPSS-11-1(t) (pss11.1),qGPL-1-1(t) (gpl1.1),qGPL-2-1(t) (gpl2.1),qGPL-12-1(t) (gpl12.1),qGW-1-2(t) (gw1.1),qGW-2-2(t) (gw2.1),qGW-3-4(t) (gw3.1),qGW-3-5(t) (gw3.2),qGW-7-2(t) (gw7.1),qYLD-1-1(t) (yld1.1),qYLD-1-2(t) (yld1.2)
20611	14513216	Septiningsih, E.M., K.R. Trijatmiko, S. Moeljopawiro and S.R. McCouch	Identification of quantitative trait loci for grain quality in an advanced backcross population derived from the Oryza sativa variety IR64 and the wild relative O. rufipogon.	Theor. Appl. Genet.	107	1433-1441	2003	qFRR-8-1(t),qGD-4-1(t) (GD),qGD-8-1(t) (GD),qDR-10-1(t) (DR),qGG-7-1(t) (GG),qGG-12-1(t) (GG),qDYG-7-1(t) (DYG),qDYG-9-1(t) (DYG),qDYG-10-1(t) (DYG),qRG-7-1(t) (RG),qRG-12-1(t) (RG),qMR-10-1(t) (MR),qHR-1-1(t) (HR),qHR-2-1(t) (HR),qHR-5-1(t) (HR),qBR-1-1(t) (BR),qBR-1-2(t) (BR),qBR-2-1(t) (BR),qBR-5-1(t) (BR),qCR-2-1(t) (CR),qCR-3-1(t) (CR),qAC-6-1(t) (AC),qGC-6-1(t) (GC)	qFRR-8-1(t),qGD-4-1(t) (GD),qGD-8-1(t) (GD),qDR-10-1(t) (DR),qGG-7-1(t) (GG),qGG-12-1(t) (GG),qDYG-7-1(t) (DYG),qDYG-9-1(t) (DYG),qDYG-10-1(t)  (DYG),qRG-7-1(t) (RG),qRG-12-1(t) (RG),qMR-10-1(t) (MR),qHR-1-1(t) (HR),qHR-2-1(t) (HR),qHR-5-1(t) (HR),qBR-1-1(t) (BR),qBR-1-2(t) (BR),qBR-2-1(t) (BR),qBR-5-1(t) (BR),qCR-2-1(t) (CR),qCR-3-1(t) (CR),qAC-6-1(t) (AC),qGC-6-1(t) (GC)
20612		Mizobuchi, R., H. Hirabayashi, R. Kaji, Y. Nishizawa, A. Yoshimura, H. Satoh, T. Ogawa, M. Okamoto	Isolation and characterization of rice lesion-mimic mutants with enhanced resistance to rice blast and bacterial blight.	Plant Sci.	163(2)	345-353	2002	SPL15,SPL7,SPL12,SPL6,SPL5-2(T),SPL2,SPL3,SPL8,SPL4,SPL9,SPL10,SPL1,SPL13,SPL14,SPL5	Spl15(t), Spl15*, Spl15,spl7, HSFA4D, HSF10, HSF15, OsHSF15, SP17, OsHsf-15, rHsf10, OsHsfA4d, HSfA4d, lrd13, HSF1,Spl12(t), Spl12*, Spl12 ,spl6,spl5-2(t), spl5-2,spl2(bl3), spl2, bl3,spl3(bl4), spl3, bl4,spl8(bl8), spl8, bl8,spl4(bl5), spl4, bl5,spl9,spl10,Spl1, spl1(sl,bl2), sl, bl2, spl1,spl13(t), spl13*, spl13,spl14(t), spl14*, spl14,spl5(bl6,spl5-1), bl6, spl5, SF3b3
20613		Mizobuchi, R., H. Hirabayashi, R. Kaji, Y. Nishizawa, H. Satoh, T. Ogawa and M. Okamoto	Developmental responses of resistance to Magnaporthe grisea and Xanthomonas campestris pv.oryzae in lesion-mimic mutants of rice.	Breeding Science	53	93-100	2003	SPL13,SPL12,SPL5-2(T),SPL14,SPL15	spl13(t), spl13*, spl13,Spl12(t), Spl12*, Spl12 ,spl5-2(t), spl5-2,spl14(t), spl14*, spl14,Spl15(t), Spl15*, Spl15
20614		Li, Z., J. Wan, J. Xia, and M. Yano	Mapping of quantitative trait loci controlling physico-chemical properties of rice grains (Oryza sativa L.).	Breeding Science	53	209-215	2003	qAC-3-1(t) (qAC-3),qAC-4-1(t) (qAC-4),qAC-5-2(t) (qAC-5),qAC-6-2(t) (qAC-6),qASS-3-1(t) (qASS-3),qASS-6-2(t) (qASS-6a),qASS-6-3(t) (qASS-6b),qGC-1-1(t) (qGC-1),qGC-2-2(t) (qGC-2a),qGC-2-3(t) (qGC-2b),qGC-6-2(t) (qGC-6a),qGC-6-3(t) (qGC-6b)	qAC-3-1(t) (qAC-3),qAC-4-1(t) (qAC-4),qAC-5-2(t) (qAC-5),qAC-6-2(t) (qAC-6),qASS-3-1(t) (qASS-3),qASS-6-2(t) (qASS-6a),qASS-6-3(t) (qASS-6b),qGC-1-1(t) (qGC-1),qGC-2-2(t) (qGC-2a),qGC-2-3(t) (qGC-2b),qGC-6-2(t) (qGC-6a),qGC-6-3(t) (qGC-6b)
20615		Murai, M., H. Bahadur KC, T. Yoshida	Effect of the dwarfing gene d18-k on cool tolerance at booting stage under the genetic background of an extremely cool-tolerant rice line Norin-PL11, and its relation with water depth.	Breeding Science	53	237-244	2003	D18	d18-h  (d18-I, d18h), dwf15, d25, d18, d18-k, d18-AD, d18-dy, OsGA3ox2, ga3ox2, OsGA3OX2, GA3OX2, OsGA3ox-2, GA3ox-2, GA3ox1
20617		Ito, M., N. Sentoku, A. Nishimura, S.K. Hong, Y. Sato and M. Matsuoka	Roles of rice GL2-type homeobox genes in epidermis differentiation.	Breeding Science	53	245-253	2003	ROC9,ROC3,OUL1,ROC2,ROC1,ROC7,URL1,ROC6,ROC4	Roc9(t), Roc9, GL2-9, OsGL2, GL2, OsHDZ2, HDZ2, OsHDZIP2, HDZIP2,Roc3(t), Roc3, GL2-3, OsHDZ39, OsHDZIP39, HDZ39, HDZIP39,ROC5, Roc5(t), Roc5, GL2-5, OsROC5, CLF1, OsCLF1, OsOUL1, OsHDZ7, OsHDZIP7, HDZ7, HDZIP7,Roc2(t), Roc2, GL2-2, OsHDZ17, OsHDZIP17, HDZ17, HDZIP17,Roc1(t), GL2-1, OsHDZ23, OsHDZIP23, HDZ23, HDZIP23,Roc7(t), Roc7, GL2-7, OsHDZ22, OsHDZIP22, HDZ22, HDZIP22,ROC8, Roc8(t), Roc8, OsROC8, GL2-8, CRM1, OsCRM1, Os URL1, OsHDZ20, OsHDZIP20, HDZ20, HDZIP20,Roc6(t), Roc6, GL2-6, OsHDZ32, OsHDZIP32, HDZ32, HDZIP32,Roc4(t), Roc4, GL2-4, OsROC4, OsGL2-4, OsHDZ16, OsHDZIP16, HDZ16, HDZIP16
20618		Murai, M., A. Nagayama, S. Sato, H. Bahadur KC, K. Ise, T. Yoshida	High yielding F1 hybrid carrying Ur1 (Undulate rachis-1) gene in Japonica rice.	Breeding Science	53	263-269	2003	UR1	Ur1
20619		Hayashida, E., H. Satoh and Y. Nagato	ADL genes are required for genetic control of adaxial-abaxial pattern formation in rice leaves.	RGN	17	28-31	2000	ADL2,ADL1	adl2,OsADL1
20620		Kamiya, N., M. Ashikari, Y. Sato, Y. Nagato, H. Kitano and M. Matsuoka	Mapping of the ORGANLESS1 gene, ORL1.	RGN	18	33-34	2001	ORL1	orl1
20621	12898021	Sato, T., T. Ueda, Y. Fukuta, T. Kumagai and M. Yano	Mapping of quantitative trait loci associated with ultraviolet-B resistance in rice (Oryza  sativa L.).	Theor. Appl. Genet.	107	1003-1008	2003	qUVR-1(t),qUVR-3(t),qUVR-10(t)	qUVR-1(t),qUVR-3(t),qUVR-10(t)
20622	14614563	Ueda, T., T. Sato, H. Numa, M. Yano	Delimitation of the chromosomal region for a quantitative trait locus, qUVR-10, conferring resistance to ultraviolet-B radiation in rice (Oryza sativa L.)	Theor. Appl. Genet.	108	385-391	2004	qUVR-1(t),qUVR-3(t),qUVR-10(t)	qUVR-1(t),qUVR-3(t),qUVR-10(t)
20623	14740086	Hayashi, K., N. Hashimoto, M. Daigen, I. Ashikawa	Development of PCR-based SNP markers for rice blast resistance genes at the Piz locus.	Theor. Appl. Genet.	108	1212-1220	2004	PIZT,PIZ	Piz-t, Pi-zt, Pi-z(t), Pi2/Pizt, Pizt, Pi9, OsPiz-t,Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2
20624		Maeda, H., T. Sugisawa, H. Nemoto and Y. Sunohara	QTL analysis for rice stripe resistance in the Japanese upland rice Kanto72.	Breeding Science	54	19-24	2004	STVA,STVB	Stva(St1), St1, Stva, Stv1,Stvb(St2), St2, Stvb, Stv2
20625		Tsuchiya, T. and I. Nakamura	Disruption of GSTZ1 gene by large genetic alteration in Oryza glaberrima.	Breeding Science	54	67-73	2004	GSTZ2,GSTZ1	OsGSTZ2, GSTZ-2,OsGSTZ1, GSTZ-1
20626	14513218	Lin, H.X., M.Z, Zhu, M. Yano, J.P. Gao, Z.W. Liang, W.A. Su, X.H. Hu, Z.H. Ren, D.Y. Chao	QTLs for Na+ and K+ uptake of the shoots and roots controlling rice salt tolerance.	Theor. Appl. Genet.	108	253-260	2004	SKC1,qSDS-1(t),qSDS-6(t),qSNC-7(t),qSDS-7(t),qSNTQ-7(t),qRNC-9(t),qRNTQ-1(t),qRKC-4(t),qRKC-7(t),qRKTQ-7(t)	OsHKT8, HKT8, Os-HKT1;5, OsHKT1;5, HKT1;5, SKC1, qSKC-1(t), OsSKC1,qSDS-1(t),qSDS-6(t),qSNC-7(t),qSDS-7(t),qSNTQ-7(t),qRNC-9(t),qRNTQ-1(t),qRKC-4(t),qRKC-7(t),qRKTQ-7(t)
20627	14523518	Wang, G.L., C. Wu, L. Zeng, C. He, M. Baraoidan, F.de Assis Goes da Silva, C.E. Williams, P.C. Ronald, H. Leung	Isolation and characterization of rice mutants compromised in Xa21-mediated resistance to X. oryzae pv. oryzae.	Theor. Appl. Genet.	108	379-384	2004	XA21	Xa21*, Xa21, OsXA21
20628	14605807	Lu, G., C. Jantasuriyarat, B. Zhou, G.L. Wang	Isolation and characterization of novel defense response genes involved in compatible and incompatible interaction between rice and Magnaporthe grisea.	Theor. Appl. Genet.	108	525-534	2004	PI9,PIZ,XA21	Pi9(t), Pi9(t)*, Pi9, Pi-9(t),Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2,Xa21*, Xa21, OsXA21
20629	14564397	Jiang, G.H., Y.Q. He, C.G. Xu, X.H. Li, Q. Zhang	The genetic basis of stay-green in rice analyzed in a population of doubled haploid lines derived from an indica by japonica cross.	Theor. Appl. Genet.	108	688-698	2004	qRRGS-6(t) (rrgs6),qRGAF-2-1(t) (rgaf2a),qRGAF-4-1(t) (rgaf4a),qRGAF-6-1(t) (rgaf6a),qRGAF-7(t) (rgaf7),qRGAF-3(t) (rgaf3),qRGAF-10(t) (rgaf10),qRGAF-4-2(t) (rgaf4b),qRGAF-6-2(t) (rgaf6b),qRGAF-8(t) (rgaf8),qRGAS-6-1(t) (rgas6a),qRGAS-3(t) (rgas3),qRGAS-7-1(t) (rgas7a),qRGAS-7-2(t) (rgas7b),qRGAS-6-2(t) (rgas6b),qRGAS-10(t) (rgas10),qRGAS-11(t) (rgas11),qRGAF-2-2(t) (rgaf2b),qRDGF-2-1(t) (rdgf2a),qRDGF-2-2(t) (rdgf2b),qRDGF-2-3(t) (rdgf2c),qRDGF-3(t) (rdgf3),qRDGF-4(t) (rdgf4),qRDGF-8-1(t) (rdgf8a),qRDGF-9(t) (rdgf9),qRDGF-6(t) (rdgf6),qRDGF-7(t) (rdgf7),qRDGF-8-2(t) (rdgf8b),qRDGF-10(t) (rdgf10),qRRGF-2(t) (rrgf2),qRRGF-10(t) (rrgf10),qRRGF-7(t) (rrgf7),qRRGF-12(t) (rrgf12),qRDGS-2-1(t) (rdgs2a),qRDGS-2-2(t) (rdgs2b),qRDGS-6(t) (rdgs6),qRDGS-8-1(t) (rdgs8a),qRDGS-8-2(t) (rdgs8b),qRDGS-3-1(t) (rdgs3a),qRDGS-3-2(t) (rdgs3b),qRDGS-7(t) (rdgs7),qRDGS-10(t) (rdgs10),qRRGS-2(t) (rrgs2),qRRGS-3(t) (rrgs3),qRRGS-10(t) (rrgs10),qRRGS-7(t) (rrgs7)	qRRGS-6(t) (rrgs6),qRGAF-2-1(t) (rgaf2a),qRGAF-4-1(t) (rgaf4a),qRGAF-6-1(t) (rgaf6a),qRGAF-7(t) (rgaf7),qRGAF-3(t) (rgaf3),qRGAF-10(t) (rgaf10),qRGAF-4-2(t) (rgaf4b),qRGAF-6-2(t) (rgaf6b),qRGAF-8(t) (rgaf8),qRGAS-6-1(t) (rgas6a),qRGAS-3(t) (rgas3),qRGAS-7-1(t) (rgas7a),qRGAS-7-2(t) (rgas7b),qRGAS-6-2(t) (rgas6b),qRGAS-10(t) (rgas10),qRGAS-11(t) (rgas11),qRGAF-2-2(t) (rgaf2b),qRDGF-2-1(t) (rdgf2a),qRDGF-2-2(t) (rdgf2b),qRDGF-2-3(t) (rdgf2c),qRDGF-3(t) (rdgf3),qRDGF-4(t) (rdgf4),qRDGF-8-1(t) (rdgf8a),qRDGF-9(t) (rdgf9),qRDGF-6(t) (rdgf6),qRDGF-7(t) (rdgf7),qRDGF-8-2(t) (rdgf8b),qRDGF-10(t) (rdgf10),qRRGF-2(t) (rrgf2),qRRGF-10(t) (rrgf10),qRRGF-7(t) (rrgf7),qRRGF-12(t) (rrgf12),qRDGS-2-1(t) (rdgs2a),qRDGS-2-2(t) (rdgs2b),qRDGS-6(t) (rdgs6),qRDGS-8-1(t) (rdgs8a),qRDGS-8-2(t) (rdgs8b),qRDGS-3-1(t) (rdgs3a),qRDGS-3-2(t) (rdgs3b),qRDGS-7(t) (rdgs7),qRDGS-10(t) (rdgs10),qRRGS-2(t) (rrgs2),qRRGS-3(t) (rrgs3),qRRGS-10(t) (rrgs10),qRRGS-7(t) (rrgs7)
20630	14624339	Fujino, K., H. Sekiguchi, T. Sato, H. Kiuchi, Y. Nonoue, Y. Takeuchi, T. Ando, S.Y. Lin, M. Yano	Mapping of quantitative trait loci controlling low-temperature germinability in rice (Oryza sativa L.).	Theor. Appl. Genet.	108	794-799	2004	qLTG-3-2(t),HYPRP5,qLTG-4-3(t)	qLTG-3-2(t),qLTG-3-1(t), qLTG3-1, OsHyPRP05, OsHyPRP5, HyP/GRP05, HyP/GRP5,qLTG-4-3(t)
20631	15118822	Gu, K., D. Tian, F. Yang, L. Wu, C. Sreekala, D. Wang, G.L. Wang, Z. Yin	High-resolution genetic mapping of Xa27(t), a new bacterial blight resistance gene in rice, Oryza sativa L.	Theor. Appl. Genet.	108	800-807	2004	XA27	Xa27(t), Xa27(t)*, Xa27
20632	14634728	Armstead, I.P., L.B. Turner, M. Farrell, L. Skot, P. Gomez, T. Montoya, I.S. Dornnison, I.P. King, M.Q.  Humphreys	Synteny between a major heading date QTL in perennial ryegrass (Lolium perenne L.) and the Hd3 heading-date locus in rice.	Theor. Appl. Genet.	108	822-828	2004	HD3A	Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a 
20633		Yoshimura, A. and Y. Nagato	Report of  the Committee on Gene Symbolization, Nomenclature and Linkage Groups. I. Registration of new gene symbols.	RGN	20	5-8	2003	RHZ2,SD1,RHZ3,WBPH6,PI34	Rhz2,sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2, OsPHQ1, OsPHq1, PHq1,Rhz3,Wbph6,Pi34, RMg71, Pi24(t)
20634	12582657	Zenbayashi, K., T. Ashizawa, T. Tani, S. Koizumi	Mapping of the QTL (quantitative trait locus) conferring partial resistance to leaf blast in rice cultivar Chubu 32.	Theor. Appl. Genet.	104	547-552	2002	PI34	Pi34, RMg71, Pi24(t)
20635	12642667	Hu, F.Y., D.Y. Tao, E. Sacks, B.Y. Fu, P. Xu, J. Li, Y. Yang, K. McNally, G.S. Khush, A.H. Paterson, Z.K. Li	Convergent evolution of pereniality in rice and sorghum.	Proc. Natl. Acad. Sci. U.S.A.	100	4050-4054	2003	RHZ2,RHZ3,qRN-3 (t) (QRn3),qRN-5 (t) (QRn5),qRN-10 (t) (QRn10),qRN-6 (t) (QRn6),qRN-2 (t) (QRn2),qRN-7 (t) (QRn7),qRL-1(t) (QRl1),qRL-6(t) (QRl6),qRL-7(t) (QRl7),qRBD-2(t) (QRbd2)	Rhz2,Rhz3,qRN-3 (t) (QRn3),qRN-5 (t) (QRn5),qRN-10 (t) (QRn10),qRN-6 (t) (QRn6),qRN-2 (t) (QRn2),qRN-7 (t) (QRn7),qRL-1(t) (QRl1),qRL-6(t) (QRl6),qRL-7(t) (QRl7),qRBD-2(t) (QRbd2)
20636		Matsushita, S., T. Kurakazu, Sobrizal, K. Doi and A. Yoshimura	Mapping of genes for awn in rice using Oryza meridionalis introgression lines.	RGN	20	17-18.	2003	AN7,AN8,AN6,AN9,AN10,AN6-MER	An7(t), An7(t)*,An8(t), An8(t)*, An8,An6, An6(t), An6*,An9, An9(t)*,An10, An10*,An6-mer
20637		Takano-Kai, N., C. Anno, T. Kubo and A. Yoshimura	RFLP mapping of traits for naturally occurred variation of rice. (in Japanese)	Breeding Research	3 (Suppl. 1)	93	2001	AN6	An6, An6(t), An6*
20638		Matsushita, S., P.L. Sanches, Sobrizal, K. Doi and A. Yoshimura	Identification of new alleles of awnness genes, An7 and An8, in rice using Oryza glumaepatula introgression lines.	RGN	20	19-20	2003	AN7,AN8,AN7-GLUM,AN8-GLUM	An7(t), An7(t)*,An8(t), An8(t)*, An8,An7-glum,An8-glum
20639		Sunohara, H. and H. Kitano	New dwarf mutant controlled by a dominant gene, Twisted dwarf1.	RGN	20	20-22	2003	TD1	Td1(t)
20640		Nagasawa, N., Y. Nagato, H. Sakai	Physical mapping of the REDUCED EMBRYO2 gene.	RGN	20	22-24	2003	RE2	re2
20641		Taramino, G. J. Allen, S.K. Hong, N. Nagasawa, Y. Nagato, H. Sakai	Mapping of GOLIATH, a new gene controlling embryo size in rice.	RGN	20	24-27	2003	GO	go, go1, pla3, PLA3, PLA3/GO, OsLBD3-7, LBD3-7
20642		Takabe, E., N. Sentoku, Y. Nagato, M. Matsuoka and H. Kitano	Morphological classification of twelve rice mutants that cease embryogenesis at early globular stages.	RGN	20	27-28	2003	GLE2,GLE3,GLE4,GLE1	gle2*, gle2,gle3*, gle3,gle4*, gle4,gle1*. gle1
20643		Miura, K., M. Ashikari, M. Matsuoka and Y.I.C. Hsing	Mapping of the lazy gene, la.	RGN	20	29-30	2003	LA	la
20644	0	Wang, C., B. He, M. Xun, J. Wan	Tagging and mapping of a gene controlling yellowish-green leaf.	RGN	20	35-36	2003	YL	yl(t), yl
20645		Sato, M., T. Takemoto, T. Kumamaru, H. Satoh	Mapping of glup4 gene for highly accumulatinig glutelin precursor polypeptides in rice.	RGN	20	42-43	2003	GLUP4	glup4(esp8), esp8, glup4, OsRab5B2, Rab5a, OsRab5a, GPA1/Rab5a, GPA, GLUP4/Rab5, GLUP4/Rab5a, GPA1, OsGPA1
20646	0	Sato, M., D. Ishihara, H.D. Tian, Y. Takemoto, T. Kumamaru, H. Satoh	Gene mapping and immunocytochemistry of rice glup6 mutant.	RGN	20	43-45	2003	GLUP6	glup6(t), Glup6(t), Glup6, OsVPS9A, VPS9a, GPA2/VPS9a, GPA2, GLUP6/GEF
20647		Hou, M.Y., L. Jiang, C.M. Wang and J.M. Wan	Detection and analysis of QTLs for low temperature germinability in rice (Oryza sativa L.).	RGN	20	52-55	2003	qLTG-11(t),qLTG-2-2(t) (qLTG-2),qLTG-7(t),qLTG-12(t)	qLTG-11(t),qLTG-2-2(t) (qLTG-2),qLTG-7(t),qLTG-12(t)
20648		Murai, M. and H. Yamamoto	Allelic relationships and height effects of rice dwarfing genes from cvv. Dee-geo-woo-gen, Calrose 76 and Reimei determined in a constant genetic background.	SABRAO Journal	33(1)	21-30	2001	SD1	sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2, OsPHQ1, OsPHq1, PHq1
20649		Futsuhara, Y., F. Kikuchi and J.N. Rutger	Gene symbols for dwarfness.	RGN	3	8-10	1986	SD1	sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2, OsPHQ1, OsPHq1, PHq1
20650	12773633	Itoh, K., H. Ozaki, K. Okada, H. Hori, Y. Takeda and T. Mitsui	Introduction of Wx transgene into rice wx mutants leads to both high- and low-amylose rice.	Plant Cell Physiol.	44	473-480	2003	WX1	wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx
20651	14519768	Kamiya, N., A. Nishimura, N. Sentoku, E. Takabe, Y. Nagato, H. Kitano and M. Matsuoka	Rice globular embryo 4 (gle4) mutant is defective in radial pattern formation during embryogenesis.	Plant Cell Physiol.	44	875-883	2003	GLE4	gle4*, gle4
20656	14701935	Sonoda, Y., A. Ikeda, S. Saiki, T. Yamaya and J. Yamaguchi	Feedback regulation of the ammonium transporter gene family AMT1 by glutamine in rice.	Plant Cell Physiol.	44(12)	1396-1402	2003	AMT1;2,AMT1;3,AMT1;1	OsAMT1;2, AMT1-2, Osamt1-3, "OsAMT1,3", OsAMT1;3, OsAMT1.3, OsAMT1.2, AMT1.2,OsAMT1;3, AMT1-3, Osamt1-2, "OsAMT1,2", OsAMT1;2, OsAMT1.3, AMT1.2,OsAMT1;1, OsAMT1:1, OsAMT1, AMT1-1, AMT1, OsAMT1p, OsAMT1-1, Osamt1-1, "OsAMT1,1", OsAMT1.1, AMT1.1, FCO12
20658	9112771	Cho, H.T. and H. Kende	Expansins in deepwater rice internodes	Plant Physiol.	113	1137-1143	1997	EXPA1,EXPA2	OsEXP1, EXPA1, OsEXPA1, OsaEXPa1.16, RiExA,OsEXP2, OsEXP2(Os-EXP2), Os-EXP2, EXPA2, OsEXPA2, OsaEXPa1.23, RiExB, RiExC, Os-EXPA2
20660	9596635	Wang, G.L., D.L. Ruan, W.Y. Song, S. Sideris, L. Chen, L.Y. Pi, S. Zhang, Z. Zhang, C. Fauquet, B.S. Gaut, M.C. Whalen and P.C. Ronald	Xa21D encodes a receptor-like molecule with a leucine-rich repeat domain that determines race-specific recognition and is subject to adaptive evolution.	Plant Cell	10	765-779	1998	XA21D	Xa21D
20661	9724697	Itoh, J., A. Hasegawa, H. Kitano, and Y. Nagato	A recessive heterochronic mutation, plastochron1, shortens the plastochron and elongates the vegetative phase in rice.	Plant Cell	10	1511-1521	1998	PLA1	pla1, OsPLA1, plt1, CYP78A11
20664	11006334	Yamamuro, C., Y. Ihara, X. Wu, T. Noguchi, S. Fujioka, S. Takatsuto, M, Ashikari, H. Kitano and M. Matsuoka	Loss of function of a rice brassinosteroid insensitive1 homolog prevents internode elongation and bending of the lamina joint.	Plant Cell	12	1591-1605	2000	D61	d61*, dwf42, d61, OsBRI1, OSBRI1, BRI1, Os BRI1, Osbri1, OsBRKq1, BRKq1
20666	11090206	Orback, M.J., L. Farrall, J.A. Sweigard, F.G. Chumley and B. Valent	A telomeric avirulence gene determines efficacy for the rice blast resistance gene Pi-ta.	Plant Cell	12	2019-2032	2000	PITA	Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30, Trx30
20669	11340177	Ikeda, A., M. Ueguchi-Tanaka, Y. Sonoda, H. Kitano, M. Koshioka, Y. Futsuhara, M. Matsoka, and J. Yamaguchi	slender rice, a constitutive gibberellin response mutant, is caused by a null mutation of the SLR1 gene, an ortholog of the height-regulating gene GAI/RGA/RHT/D8.	Plant Cell	13	999-1010	2001	SLR1	slr1-1, slr1, slr, GAI, OsGAI, OsSLR1, Os SLR1, OsRGA1, OsGRAS-18, OsGRAS-18, GRAS-18, GRAS18, SLR-1
20670	11251094	Takano, M., H. Kanegae, T. Shinomura, A. Miyao, H. Hirochika, and M. Furuya	Isolation and characterization of rice phytochrome A mutants.	Plant Cell	13	521-534	2001	PHYA	phyA, PHYA* (phyA), PHYA*, Phya, PHY18, phy 18, OsPHYA 
20671	11826299	Itoh,H., Ueguchi-Tanaka,M., Sato,Y., Ashikari,M. and Matsuoka,M.	The gibberellin signaling pathway is regulated by the appearance and disappearance of SLENDER RICE1 in nuclei.	Plant Cell	14(1)	57-70	2002	SLR1	slr1-1, slr1, slr, GAI, OsGAI, OsSLR1, Os SLR1, OsRGA1, OsGRAS-18, OsGRAS-18, GRAS-18, GRAS18, SLR-1
20672		Ikeda, A., S. Tanaka, J. Yamaguchi, and Y. Futsuhara	Character expression and mode of inheritance of a slender mutant with constitutive gibberellin-response in rice. [Japanese]	Sci. Rep. Fac. Agric. Meijo Univ.	35	7-13	1999	SLR1	slr1-1, slr1, slr, GAI, OsGAI, OsSLR1, Os SLR1, OsRGA1, OsGRAS-18, OsGRAS-18, GRAS-18, GRAS18, SLR-1
20676	10022841	Sato, Y., N. Sentoku, Y. Miura, H. Hirochika, H. Kitano and M. Matsuoka	Loss-of-function mutations in the rice homeobox gene OSH15 affect the architecture of internodes resulting in dwarf plants.	EMBO J.	18(4)	992-1002	1999	OSH15	OSH15, OsH15, OSKN3, Oskn3, HOS3, D6, d6, OSH15/Oskn3, HB253, H15, OsKNOX3, KNOX3
20678	11549765	Nagasaki, H., T. Sakamoto, Y. Sato, and M. Matsuoka	Functional analysis of the conserved domains of a rice KNOX homeodomain protein, OSH15.	Plant Cell	13	2085-2098	2001	OSH15	OSH15, OsH15, OSKN3, Oskn3, HOS3, D6, d6, OSH15/Oskn3, HB253, H15, OsKNOX3, KNOX3
20679	12897251	Miyao, A., K. Tanaka, K. Murata, H. Sawaki, S. Takeda, K. Abe, Y. Shinozuka, K. Onosato, and H. Hirochika	Target site specificity of the Tos17 retrotransposon shows a preference for insertion within genes and against insertion in retrotransposon-rich regions of the genome.	Plant Cell	15	1771-1780	2003	TOS17	Tos17, Osr21, Tos17chr10, Tos17_Chr10, Tos17chr7, Tos17_Chr7
20681		Qian, Q., Y.H. Li, D. Zeng, S. Teng, Z. Wang, X. Li, Z. Dong, N. Dai, L. Sun, and J. Li	Isolation and genetic characterization of a fragile plant mutant rice (Oryza sativa L).	Chin. Sci. Bull.	46	2082-2085	2001	BC1	bc1, bc-1, OsBC1, CWA1, FP1, OsPCS3, PCS3
20683	14615594	Hong, Z., M. Ueguchi-Tanaka, K. Umemura, S. Uozu, S. Fujioka, S. Takatsuto, S. Yoshida, M. Ashikari, H. Kitano, and M. Matsuoka	A rice brassinosteroid-deficient mutant, ebisu dwarf (d2), is caused by a loss of function of a new member of cytochrome P450.	Plant Cell	15	2900-2910	2003	D2	d2, dwf2, CYP90D2, D2/CYP90D2, OsD2, SMG11, OsSMG11, D2/SMG11, OsD2a, OsD2b
20684	14688295	Kaneko, M., Y. Inukai, M. Ueguchi-Tanaka, H. Itoh, T. Izawa, Y. Kobayashi, T. Hattori, A. Miyao, H. Hirochika, M. Ashikari, and M. Matsuoka	Loss-of-function mutations of the rice GAMYB gene impair -amylase expression in aleurone and flower development.	Plant Cell	16	33-44	2004	GAMYB	OsGAMYB, GAM1, OsGAMyb, Os-MYBGA, Os GAMYB, OsMYBGA, MYBGA, Os2R_MYB15, 2R_MYB15 
20687	15208396	Malcomber, S.T., and E.A. Kellogg	Heterogeneous expression patterns and separate roles of the SEPALLATA gene LEAFY HULL STERILE1 in grasses.	Plant Cell	16	1692-1706	2004	LHS1	OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO, OsLHS1, OsLG3b, LG3b, qLGY3, LGY3, DLN80, OsDLN80, OLR, OsOLR, GW3p6, OsGW3p6, OsMADS1GW3p6, MADS1GW3p6, qLGY3/OsLG3b/GW3p6
20694	11027362	Ueguchi-Tanaka, M., Y. Fujisawa, M. Kobayashi, M. Ashikari, Y. Iwasaki, H. Kitano and M. Matsuoka	Rice dwarf mutant d1, which is defective in the  subunit of the heterotrimeric G protein, affects gibberellin signal transduction.	Proc. Natl. Acad. Sci. U.S.A.	97	11638-11343	2000	D1	d1, GPA1, GA1, OsGA1, RGA1, dwf1, XA7, RGA, D1/RGA1, D89, TGW5, OsTGW5, SRG5, OsSRG5
20696	11149940	Ono, E., H.L. Wong, T. Kawasaki, M. Hasegawa, O. Kodama, and K. Shimamoto	Essential role of the small GTPase Rac in disease resistance of rice.	Proc. Natl. Acad. Sci. U.S.A.	98	759-764	2001	RAC1	OsRAC1, OsRac1, Os Rac1, Rac1, Os-Rac1
20698	12237405	Suharsono, U., Y. Fujisawa, T. Kawasaki, Y. Iwasaki, H. Satoh and K. Shimamoto	The heterotrimeric G protein  subunit acts upstream of the small GTPase Rac in disease resistance of rice.	Proc. Natl. Acad. Sci. U.S.A.	99	13307-13312	2002	PIA,RAC1,D1	Pi a, Pia, Pi-a, Pia-1, Pia-2,OsRAC1, OsRac1, Os Rac1, Rac1, Os-Rac1,d1, GPA1, GA1, OsGA1, RGA1, dwf1, XA7, RGA, D1/RGA1, D89, TGW5, OsTGW5, SRG5, OsSRG5
20702	12601171	Chen, H., S. Wang, Y. Xing, C. Xu, P.M. Hayes and Q. Zhang	Comparative analyses of genomic locations and race specificities of loci for quantitative resistance to Pyricularia grisea in rice and barley.	Proc. Natl. Acad. Sci. U.S.A.	100	2544-2549	2003	qRBR-1-1 (t) (rbr1a),qRBR-1-2 (t) (rbr1b),qRBR-1-3 (t) (rbr1c),qRBR-1-4 (t) (rbr1d),qRBR-2 (t) (rbr2),qRBR-3 (t) (rbr3),qRBR-7-1 (t) (rbr7a),qRBR-7-2 (t) (rbr7b),qRBR-8 (t) (rbr8),qRBR-9-1 (t) (rbr9a),qRBR-9-2 (t) (rbr9b),qRBR-9-3 (t) (rbr9c)	qRBR-1-1 (t) (rbr1a),qRBR-1-2 (t) (rbr1b),qRBR-1-3 (t) (rbr1c),qRBR-1-4 (t) (rbr1d),qRBR-2 (t) (rbr2),qRBR-3 (t) (rbr3),qRBR-7-1 (t) (rbr7a),qRBR-7-2 (t) (rbr7b),qRBR-8 (t) (rbr8),qRBR-9-1 (t) (rbr9a),qRBR-9-2 (t) (rbr9b),qRBR-9-3 (t) (rbr9c)
20706	10934011	Scarpella, E., S. Rueb, K.J.M.Boot, J.H.C. Hoge and A.H. Meijer	A role for the rice homeobox gene Oshox1 in provascular cell fate commitment.	Development	127	3655-3669	2000	HOX1	Oshox1, OsHox1, OsHDZ38, OsHDZIP38, HDZ38, HDZIP38
20707	11782419	Asai, K., N. Satou, H. Sasaki, H. Satoh and Y. Nagato	A rice heterochronic mutant, mori1, is defective in the juvenile-adult phase change.	Development	129	265-273	2002	MORI1	mori1
20708	12505996	Scarpella, E., S. Rueb and A.H. Meijer	The RADICLELESS1 gene is required for vascular pattern formation in rice.	Development	130	645-658	2003	RAL1	ral1*, ral1
20710	12649483	Sasaki, A., H. Itoh, K. Gomi, M. Ueguchi-Tanaka, K. Ishiyama, M. Kobayashi, D.H. Jeong, G. An, H. Kitano, M. Ashikari, M. Matsuoka	Accumulation of phosphorylated repressor for gibberellin signaling in an F-box mutant.	Science	299 (5614)	1896-1898	2003	GID2,_,_,_,_,_,_,_,_,_,_,_,_,_,_,SLR1	gid2, GF14e, OsGF14e, OsGID2, 14-3-3e,OsSkp1,OsSkp3,OsSkp4,OsSkp6,OsSkp7,OsSkp8,OsSkp9,OsSkp10,OsSkp11,OsSkp12,OsSkp13,OsSkp14,OsSkp2,OsSkp5,slr1-1, slr1, slr, GAI, OsGAI, OsSLR1, Os SLR1, OsRGA1, OsGRAS-18, OsGRAS-18, GRAS-18, GRAS18, SLR-1
20711	12154129	Izawa, T., T. Oikawa, N. Sugiyama, T. Tanisaka, M. Yano and K. Shimamoto	Phytochrome mediates the external light signal to repress FT orthologs in photoperiodic flowering of rice.	Genes Dev.	16	2006-2020	2002	SE1,FTL8,RFT1,FTL4,HD3A,FTL1,SE5,FTL7,FTL5,FTL6	Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, OsHd1,  Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,FT-L 8, OsFTL8,FT-L 3, OsFTL3, FTL3, FT-L3, RFT, OsRFT1,OsFT, osFT, FT-L 4, OsFTL4, FT-L4, FT-1, OsFT-1,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,FTL, FT-L1, OsFTL1, FTL1,Se5, OsHO1, OsHO-1, OsHY1, HO-1, HO1, OsSE5, YGL2, YGL2/HO1,FT-L 7, OsFTL7,FT-L 5, OsFTL5, FT-L5,FT-L 6, OsFTL6, FT-L6
20712	15078816	Doi, K., T. Izawa, T. Fuse, U. Yamanouchi, T. Kubo, Z. Shimatani, M. Yano, and A. Yoshimura	Ehd1, a B-type response regulator in rice, confers short-day promotion of flowering and controls FT-like gene expression independently of Hd1.	Genes Dev.	18	926-936	2004	SE1,EF1	Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, OsHd1,  Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 
20713	9670561	Cai, X.L., Z.Y. Wang, Y.Y. Xing, J.L. Zhang and M.M. Hong	Aberrant splicing of intron 1 leads to the heterogeneous 5'UTR and decreased expression of waxy gene in rice cultivars of intermediate amylose content.	Plant J.	14(4)	459-465	1998	WX1	wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx
20714	9744101	Isshiki, M., K. Morino, M. Nakajima, R.J. Okagaki, S.R. Wessler, T. Izawa and K. Shimamoto	A naturally occurring functional allele of the rice waxy locus has a GT to TT mutation at the 5' splice site of the first intron.	Plant J.	15(1)	133-138	1998	WX1	wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx
20715	9807819	Cho, H.T. and H. Kende	Tissue localization of expansins in deepwater rice.	Plant J.	15(6)	805-812	1998	EXPA2,EXPA3,EXPA1,EXPA4	OsEXP2, OsEXP2(Os-EXP2), Os-EXP2, EXPA2, OsEXPA2, OsaEXPa1.23, RiExB, RiExC, Os-EXPA2,OsEXP3 (Os-EXP3), EXPA3, OsEXP3, Os-EXP3, OsaEXPa1.18, RiExD, Os-EXPA3, OsEXPA3,OsEXP1, EXPA1, OsEXPA1, OsaEXPa1.16, RiExA,OsEXP4 (Os-EXP4), OsEXPA4, OsEXP4, Os-EXP4, OsaEXPa1.22
20716	10205906	Takahashi, A., T. Kawasaki, K. Henmi, K. Shii, O. Kodama, H. Satoh and K. Shimamoto	Lesion mimic mutants of rice with alterations in early signaling events of defense.	Plant J.	17(5)	535-545	1999	PR10A,CDR1,CDR2,CDR3	PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,cdr1, cdr1*,cdr2, cdr2*,Cdr3, Cdr3*
20718	10417713	Kawasaki, T., S. Okumura, N. Kishimoto, H. Shimada, K. Higo and N. Ichikawa	RNA maturation of the rice SPK gene may involve trans-splicing.	Plant J.	18(6)	625-632	1999	SPK	CDPK 1, CDPK1, CDPK23, OsCDPK23, OsCPK23, CPK23, OsSPK
20721	10571882	Century, K.S., R.A. Lagman, M. Adkisson, J. Morlan, R. Tobias, K. Schwartz, A. Smith, J. Love, P.C. Ronald and M.C. Whalen	Developmental control of Xa21-mediated disease resistance in rice.	Plant J.	20 (2)	231-236	1999	XA21	Xa21*, Xa21, OsXA21
20722	10849355	Izawa, T., T. Oikawa, S. Tokutomi, K. Okuno and K. Shimamoto	Phytochromes confer the photoperiodic control of flowering in rice (a short-day plant).	Plant J.	22 (5)	391-399	2000	SE5	Se5, OsHO1, OsHO-1, OsHY1, HO-1, HO1, OsSE5, YGL2, YGL2/HO1
20724	10972871	Isshiki, M., M. Nakajima, H. Satoh and K. Shimamoto	dull: rice mutants with tissue-specific effects on the splicing of the waxy pre-mRNA.	Plant J.	23 (4)	451-460	2000	DU1,DU2,WX1	du1,du2,wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx
20726	12148532	Nakagawa, M., K. Shimamoto and J. Kyozuka	C2, rice TERMIAL FLOWER 1/CENTRORADIALIS homologs, confers delay of phase transition and altered panicle morphology in rice.	Plant J.	29 (6)	743-750	2002	RCN2,RCN1	Rcn2, OsRCN2,Rcn1, FDR2, Fdr2, RCN1/FDR2, OsRCN1
20730		Wan, X.Y., C.C. Su, W.B. Shen, H.Q. Zhai, H. Yasui, A. Yoshimura and J.M. Wan	Stable expression of QTL for cooking and eating quality (Oryza sativa L.) in CSSLs population.	RGN	20	57-60	2003	qLT-8,qTD-6,qTD-8,qIVOE-6-1(t)  (qIVOE-6a, qIVOE-6),qIVOE-8,qAC-8	qLT-8,qTD-6,qTD-8,qIVOE-6-1(t)  (qIVOE-6a, qIVOE-6),qIVOE-8,qAC-8
20731		Xue, Y., L. Jiang, J.F. Ma, H.Q. Zhai and J.M. Wan	Identification of quantitative trait loci for Al toxicity tolerance in rice (Oryza sativa L.).	RGN	20	60-62	2003	qRRE-1,qRRE-5,qRRE-8,qRRE-9,qRRE-11	qRRE-1,qRRE-5,qRRE-8,qRRE-9,qRRE-11
20732		Jiang, S.M., T. Imbe, N. Horiswe, L.L. Xu and J.M. Wan	Expression analyses of glutelin genes in low glutelin rice mutant LGC-1.	RGN	20	62-64	2003	LGC1	Lgc1 (LGC-1), Lgc1, LGC-1, glu1(t)*(Lgc1), glu1(t)*, glu8, Glu1
20733		Miyahara, K.	Analysis of LGC-1. Low glutelin mutant of rice.	Gamma Field Symposia	38	43-52	1999	LGC1	Lgc1 (LGC-1), Lgc1, LGC-1, glu1(t)*(Lgc1), glu1(t)*, glu8, Glu1
20734		Murai, M., K. Maruyama and F. Kikuchi	Gene symbol registration No.155. Gene symbol: sd1-d, sd1-r. In: Report of the Committee on Gene Symbolization, Nomenclature and Linkage Groups. I. Registration of new gene symbols.(Yoshimura, A. and Y. Nagato)	RGN	20	5	2003	SD1	sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2, OsPHQ1, OsPHq1, PHq1
20735		Kawano, R., T. Mochizuki, H. Yasui, K. Doi and A. Yoshimura	QTL analysis for floating ability in rice.	RGN	20	74-77	2003	qLEI-3 (qLEI 3),qLEI-12 (qLEI 12),qRIE-1 (qRIE 1),qRIE-12 (qRIE 12)	qLEI-3 (qLEI 3),qLEI-12 (qLEI 12),qRIE-1 (qRIE 1),qRIE-12 (qRIE 12)
20736		Takahashi, U. and T. Mochizuki	Varietal differences in internode elongation ability of deepwater rice.	Japan. J. Crop Sci.	69 (Extra issue 1)	198-199	2000	qRIE-1 (qRIE 1),qRIE-12 (qRIE 12)	qRIE-1 (qRIE 1),qRIE-12 (qRIE 12)
20737		Inouye, J., T. Kyuragi and V.T. Xuan	On the growth habits of floating, single- and double-transplanted rice plants in the Mekong Delta III. Ability of internode elongation of floating rice.	Japan. J. Trop. Agr.	22	67-70	1978	qLEI-3 (qLEI 3),qLEI-12 (qLEI 12)	qLEI-3 (qLEI 3),qLEI-12 (qLEI 12)
20738		Fujita, D., K. Doi, A. Yoshimura and H. Yasui	Mappiing of a new resistance gene for green rice leafhopper introgressed from Oryza rufipogon Griff. into cultiavted rice, Oryza sativa L.	RGN	20	79-80	2003	GRH5	Grh5
20739		Murai, M., H. Bahadur KC, N. Gima	Pleiotropic effect of the dwarfing gene d18-k on cool tolerance at booting stage under the genetic background of an extremely cool-tolerant line Norin-PL8 in rice.	Plant Breeding	122 (5)	410-415	2003		
20740		Murai, M., S. Hirose, S. Sato, M. Takeda	Effects of dwarfing genes from Dee-geo-woo-gen and other varieties on cool temperature tolerance at booting stage in rice.	Japan. J. Breed.	41	241-254	1991	D18,SD1	d18-h  (d18-I, d18h), dwf15, d25, d18, d18-k, d18-AD, d18-dy, OsGA3ox2, ga3ox2, OsGA3OX2, GA3OX2, OsGA3ox-2, GA3ox-2, GA3ox1,sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2, OsPHQ1, OsPHq1, PHq1
20741		Murai, M., S. Hirose, A. Kusutani, N. Shinbashi, Y. Nishikawa	Relation between cool temperature damage at booting stage and water depth in dwarf lines of rice.	Japan. J. Breed.	41	581-593	1991	SD1,D18	sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2, OsPHQ1, OsPHq1, PHq1,d18-h  (d18-I, d18h), dwf15, d25, d18, d18-k, d18-AD, d18-dy, OsGA3ox2, ga3ox2, OsGA3OX2, GA3OX2, OsGA3ox-2, GA3ox-2, GA3ox1
20742		Murai, M., S. Hirose, N. Suzuki, M. Yamane, S. Sato	Effects of the dwarfing gene from Dee-geo-woo-gen and three others on high temperature tolerance at flowering.	Japan. J. Breed.	42	91-102	1992	D18,SD1	d18-h  (d18-I, d18h), dwf15, d25, d18, d18-k, d18-AD, d18-dy, OsGA3ox2, ga3ox2, OsGA3OX2, GA3OX2, OsGA3ox-2, GA3ox-2, GA3ox1,sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2, OsPHQ1, OsPHq1, PHq1
20743		Murai, M., S. Hirose, S. Sato	Effect of the dwarfing gene from Dee-geo-woo-gen and others on cool temperature tolerance at flowering stage in rice.	Japan. J. Breed.	42	811-823	1992	SD1,D18	sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2, OsPHQ1, OsPHq1, PHq1,d18-h  (d18-I, d18h), dwf15, d25, d18, d18-k, d18-AD, d18-dy, OsGA3ox2, ga3ox2, OsGA3OX2, GA3OX2, OsGA3ox-2, GA3ox-2, GA3ox1
20744		Yamasaki, M., A. Yoshimura and H. Yasui	QTL mapping of rice ovicidal response to two planthopper species.	RGN	20	81-83	2003	qGWL-6,qGWL-10,qGWL-5,qEM-3,qEM-6,qEM-7-1,qEM-7-2,qEM-8,qEM-2	qGWL-6,qGWL-10,qGWL-5,qEM-3,qEM-6,qEM-7-1,qEM-7-2,qEM-8,qEM-2
20745		Yamasaki, M., A. Yoshimura and H. Yasui	Mapping of quantitative trait loci of ovicidal response to brown planthopper (Nilaparvata lugens Stal) in rice (Oryza sativa L.).	Breeding Science	50	291-296	2000	qGWL-6,qGWL-10,qGWL-5,qEM-3,qEM-6,qEM-7-1,qEM-7-2,qEM-8,qEM-2	qGWL-6,qGWL-10,qGWL-5,qEM-3,qEM-6,qEM-7-1,qEM-7-2,qEM-8,qEM-2
20746		Su, C.C., J. Wan, H.Q. Zhai, C.M. Wang and L.H. Sun	A new locus for resistance to brown plant hopper in DV85, an indica rice (Oryza sativa L.).	RGN	20	83-85	2003	qBPH11	Qbph11
20747		Muralidharan, K., D. Krishnaveni, G.S. Laha, C.S. Reddy, M. Srinivasprasad and R. Sridhar	Appraisal of bacterial leaf blight resistance genes in India.	RGN	20	96-98	2003	XA13,XA14,XA5,XA12,XA21,XA18,XA8,XA11,XA4,XA7,XA10,XA3,XA1	xa13, Xa13, Os8N3, Os-8N3, 8N3, OsSWEET11, SWEET11, OsSWEET11/Xa13, Xa13/Os8N3/SWEET11, Os8N3/Xa13, OsSWEET11/Os8N3, OsSWEET11a, SWEET11a,Xa14,xa5, xa-5, Xa5, TFIIAy, OsTFIIAgamma5, TFIIAgamma5, OsTFIIAgamma5/Xa5,Xa12(Xa kg), Xakg, Xa12,Xa21*, Xa21, OsXA21,Xa18,xa8,Xa11(Xa pt), Xa11, Xapt,Xa4, Xa4(Xa4a), Xa-4, Xa4-a, WAK, wak, xa4,Xa7,Xa10, Xa-10,Xa-3, Xa3 (Xa4b, Xa6, Xa9, Xa w), Xa3, Xaw, Xa6, Xa9, Xa4-b, XA26, Xa26(t), Xa26(t)*, Xa26, RKb, MRKb, MRKB, TRKb, Xa3/Xa26,Xa1(Xe), Xe, Xa1, Xa-1
20748		Muralidharan, K., D. Krishnaveni, G.S. Laha, C.S. Reddy, M. Srinivasprasad and R. Sridhar	Evaluation of blast resistance genes in India.	RGN	20	94-96	2003	PITA,PII,PI5-2,PII2,PIZ,PI3,PI12,PI30,PIA,PI9,PIK	Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30, Trx30,Pi i, Pii, Pi-i, Pii(t),Pi3, Pi5, Pi-3(t), Pi-3, Pi3(t), Pi5(t), Pi5-2, Pii,  RMg22, RMg21,Pi i2, Pii2, Pii2(t),Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2,Pi3, Pi5, Pi-3(t), Pi-3, Pi3(t), Pi5(t), Pi5-1, Pii,  RMg22, RMg21,Pi12(t), Pi12(t)*, Pi12, Pi-12(t) ,Pi-30(t), Pi30(t),Pi a, Pia, Pi-a, Pia-1, Pia-2,Pi9(t), Pi9(t)*, Pi9, Pi-9(t),Pik, RMg8, Pi-k, Pik-2, Pik-1, Pik1, Pik2, Pik-H4, Pikp-1, Pikh-1, Pik1-H4, Pikh-2, Pik2-H4
20750	15509842	Kusumi, K.,  A. Yara, N. Mitsui, Y. Tozawa and K. Iba	Characterization of a rice nuclear-encoded plastid RNA polymerase gene OsRpo Tp.	Plant Cell Physiol.	45 (9)	1194-1201	2004	RPOTM,V1,RPOTP	OsRpoTm,v1, NUS1,OsV1, OsNUS1,OsRpo Tp, OsRpoTp, NEP, RpoTp, rpoTP2
20751	15356324	Sugimoto, H., K. Kusumi, Y. Tozawa, J. Yazaki, N. Kishimoto, S. Kikuchi and K. Iba	The virescent-2, mutation inhibits translation of plastid transcripts for the plastid genetic system at an early stage of chloroplast differentiation.	Plant Cell Physiol.	45	985-996	2004	RPOTP,V2	OsRpo Tp, OsRpoTp, NEP, RpoTp, rpoTP2,v2, mGmk, GMK, Gmk, pt/mtGK, pt/mt GK, OsV2, OsGMK
20755	14988485	Fukuda, A., A. Nakamura, A. Tagiri, H. Tanaka, A. Miyao, H. Hirochika and Y. Tanaka	Function, intracellular localization and the importance in salt tolerance of a vacuolar Na+/H+ antiporter from rice.	Plant Cell Physiol.	45 (2)	146-159	2004	NHX1	OsNHX1, OcNHX1, OgNHX1, OrNHX1, OpNHX1, ObNHX1
20757	15295073	Choi, D., J.H. Kim and H. Kende	Whole genome analysis of the OsGRF gene family encoding plant-specific putative transcription activators in rice (Oryza sativa L.).	Plant Cell Physiol.	45 (7)	897-904	2004	GRF7,GRF8,GS2,GRF5,GRF9,GRF3,GRF10,GRF12,GRF6,GRF2,GRF11,GRF1	OsGRF7,OsGRF8,OsGRF4, GRF4, GS2/OsGRF4, PT2, GLW2, GS2/GL2, LGS1, OsLGS1,OsGRF5,OsGRF9,OsGRF3,OsGRF10,OsGRF12,OsGRF6,OsGRF2,OsGRF11,OsGRF1
20767		Pelucchi, N., F. Fornara, C. Favalli, S. Masiero, C. Lago, M. Enrico Pe, L. Colombo and M.M. Kater	Comparative analysis of rice MADS-box genes expressed during flower development.	Sex. Plant Reprod.	15	113-122	2002	PAP2,MADS22,MADS26	MADS34, OsMADS34, RMADS212/RMADS217/RMADS221, OsPAP2/MADS34, MADS34/PAP2, PAP2/OsMADS34, OsMADS34/PAP2, OsMADS19,OsMADS22, RMD1, DLN68, OsDLN68,OsMADS26, FDRMADS3, RMADS220
20768	10382970	Shinozuka, Y., S. Kojima, A. Shomura, H. Ichimura, M. Yano, K. Yamamoto and T. Sasaki	Isolation and characterization of rice MADS box gene homologues and their RFLP mapping.	DNA Res.	6	123-129	1999	MADS50	OsMADS50, AGL20, SOC1, OsSOC1, RMADS208, OsSOC1/ OsMADS50/DTH3, DTH3, OsDTH3
20769	12581301	Matsumura, H., S. Nirasawa, A. Kiba, N. Urasaki, H. Saitoh, M. Ito, M. Kawai-Yamada, H. Uchimiya and R. Terauchi	Overexpression of Bax inhibitor suppresses the fungal elicitor-induced cell death in rice (Oryza sativa L.) cells.	Plant J.	33 (3)	425-434	2003	BL1	bl1
20770	12581309	Takeda, T., Y. Suma, M. Suzuki, H. Kitano, M. Ueguchi-Tanaka, M. Ashikari, M. Matsuoka and C. Ueguchi	The OsTB1 gene negatively regulates lateral branching in rice.	Plant J.	33 (3)	513-520	2003	FC1	fc1, OsTB1, tb1, OsTB1/FC1, Os TB1, TB1, OsFC1, MP3, OsMP3
20771	12581311	Jang, I.C., Y.M. Park, S.I. Song, H.J. Kwon, B.H. Nahm and J.K. Kim	Structure and expression of the rice class-1 type histone deacetylase genes OsHDAC1-3: OsHDAC1 overexpression in transgenic plants leads to increased growth rate and altered architecture.	Plant J.	33 (3)	531-541	2003	HDAC3,HDAC2,HDAC1	OsHDAC3, HDA703, OsHDA703,OsHDAC2, HDA710, OsHDA710 ,OsHDAC1, HDA702, OsHDA702, HDA1, OsHDA1, HDT702, OsHDT702
20773	12834406	Kaneko, M., H. Itoh, Y. Inukai, T. Sakamoto, M. Ueguchi-Tanaka, M. Ashikari and M. Matsuoka	Where do gibberellin biosynthesis and gibberellin signaling occur in rice plants?	Plant J.	35 (1)	104-115	2003	SD1,SLR1,D18,GA3OX1,GNP1	sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2, OsPHQ1, OsPHq1, PHq1,slr1-1, slr1, slr, GAI, OsGAI, OsSLR1, Os SLR1, OsRGA1, OsGRAS-18, OsGRAS-18, GRAS-18, GRAS18, SLR-1,d18-h  (d18-I, d18h), dwf15, d25, d18, d18-k, d18-AD, d18-dy, OsGA3ox2, ga3ox2, OsGA3OX2, GA3OX2, OsGA3ox-2, GA3ox-2, GA3ox1,OsGA3ox1, GA3ox1, OsGA3OX1,GA20OX1, OsGA20ox1, 20ox1, GA20ox-1, ga20ox1, Os20ox, C20OX2, OsGA20ox2, OsGA20ox-1, GA20ox1, OsGNP1
20774	12904206	Kamiya, N., H. Nagasaki, A. Morikami, Y. Sato and M. Matsuoka	Isolation and characterization of a rice WUSCHEL-type homeobox gene that is specefically expressed in the central cells of a quiescent center in the root apical meristem.	Plant J.	35 (4)	429-441	2003	QHB	OsQHB, OsWOX9, WOX9, WOX5, Os WOX5, OsWOX5, QHB/OsWOX9
20777		Arase, S., K. Fujita, T. Uehara, Y. Honda and J. Isota	Light-enhanced resistance to Magnaporthe grisea infection in the rice Sekiguchi lesion mutants.	J. Phytopathology	148	197-203	2000	SL	OsSL, sl (spl1), sl*, sl, spl1, CYP71P1, Os CYP71P1, T5H, OsT5H, CYP71A1, OsCYP71A1, OsLLM1, LLM1, LLM1/OsSL, ELL1, OsELL1, ELL1/SL, OsT5H1
20779		Sekiguchi, Y. and T. Furuta	On a rice mutant showing particular reaction to some spotting disease. Preliminary report.	Ann. Phytopath. Soc. Japan	30	71-72	1965	SL	OsSL, sl (spl1), sl*, sl, spl1, CYP71P1, Os CYP71P1, T5H, OsT5H, CYP71A1, OsCYP71A1, OsLLM1, LLM1, LLM1/OsSL, ELL1, OsELL1, ELL1/SL, OsT5H1
20780	14535886	Ueno, M., H. Shibata, J. Kihara, Y. Honda and S. Arase	Increased tryptophan decarboxylase and monoamine oxidase activities induce Sekiguchi lesion formation in rice infected with Magnaporthe grisea.	Plant J.	36 (2)	215-228	2003	_,TYDC,SL	MAO,TyDC, OsTyDC, OsTYDC, TDC, OsTDC3, TDC3, OsTDC1,OsSL, sl (spl1), sl*, sl, spl1, CYP71P1, Os CYP71P1, T5H, OsT5H, CYP71A1, OsCYP71A1, OsLLM1, LLM1, LLM1/OsSL, ELL1, OsELL1, ELL1/SL, OsT5H1
20781	14617093	Inoue, H., K. Higuchi, M. Takahashi, H. Nakanishi, S. Mori and N.K. Nishizawa	Three rice nicotianamine synthase genes, OsNAS1, OsNAS2, and OsNAS3 are expressed in cells involved in long-distance transport of iron and differentially regulated by iron.	Plant J.	36 (3)	366-381	2003	NAS2,NAS1,NAS3	OsNAS2, OsNAS1,OsNAS1,OsNAS3
20785	14756772	Gomi, K., A. Sasaki, H. Itoh, M. Ueguchi-Tanaka, M. Ashikari, H. Kitano and M. Matsuoka	GID2, an F-box subunit of the SCF E3 complex, specifically interacts with phosphorylated SLR1 protein and regulates the gibberellin-dependent degradation of SLR1 in rice.	Plant J.	37 (4)	626-634	2004	_,SLR1,_,_,GID2	OsSkp2,slr1-1, slr1, slr, GAI, OsGAI, OsSLR1, Os SLR1, OsRGA1, OsGRAS-18, OsGRAS-18, GRAS-18, GRAS18, SLR-1,OsSkp5,OsSkp15,gid2, GF14e, OsGF14e, OsGID2, 14-3-3e
20786	15144377	Lee, S. J. Kim, J.J. Han, M.J. Han and G. An	Functional analyses of the flowering time gene OsMADS50, the putative SUPPRESSOR OF OVEREXPRESSION OF CO 1/AGAMOUS-LIKE 20 (SOC1/AGL20) ortholog in rice.	Plant J.	38 (5)	754-764	2004	MADS50	OsMADS50, AGL20, SOC1, OsSOC1, RMADS208, OsSOC1/ OsMADS50/DTH3, DTH3, OsDTH3
20787	15255870	Koike, S., H. Inoue, D. Mizuno, M. Takahashi, M. Nakanishi, S. Mori and N.K. Nishizawa	OsYSL2 is a rice metal-nicotianamine transporter that is regulated by iron and expressed in the phloem.	Plant J.	39 (3)	415-424	2004	YSL15,YSL11,YSL7,YSL10,YSL12,YSL6,YSL14,YSL5,YSL8,YSL4,YSL3,YSL17,YSL13,YSL18,YSL9,YSL16,YSL1,YSL2	OsYSL15, OsYs7,OsYSL11,OsYSL7, OsYs4,OsYSL10,OsYSL12, OsYs11 ,OsYSL6, OsYs8 ,OsYSL14, OsYs5,OsYSL5, OsYs9 ,OsYSL8, OsYs3 ,OsYSL4, OsYs17 ,OsYSL3, OsYs16 ,OsYSL17, OsYs18 ,OsYSL13, OsYs12 ,OsYSL18, OsYs2 ,OsYSL9, OsYs13 ,OsYSL16, Os-YSL16, OsYs14 ,OsYSL1, OsYs1,OsYSL2, Os-YSL2, OsYs6 
20788	15075394	Sakamoto, T., K. Miura, H. Itoh, T. Tatsumi, M. Ueguchi-Tanaka, K. Ishiyama, M. Kobayashi, G.K. Agrawal, S. Takeda, K. Abe, A. Miyao, H. Hirochika, H. Kitano, M. Ashikari and M. Matsuoka	An overview of gibberellin metabolism enzyme genes and their related mutants in rice.	Plant Physiol.	134	1642-1653	2004	KS1,CPS2,GA2OX3,GNP1,KS4,KAO,GA2OX2,CPS1,SD1,D35,CPS4,KS9,CPS3,KO3,KO5,KO4,KS5,KS3,KS6,KS8,KO1,GA3OX1,D18,PRL5,SBI,KS7,GA20OX3,KS2,GA2OX1	OsKS1, KS1, KS1A, KSL1, OsKSL1, OsKS1A, OsKS1B, OsKS1C, Ks1, Os KS1, OsTPS26, TPS6, OsTPS6,OsCPS2, cps2, OsCPS2ent, CYC2, OsCyc2, OsCYC2, OsCPSL1, cpsl1, OsCyc2/OsCPS2, OsTPS7, Os-CPS2, TPS13, OsTPS13,OsGA2ox3, ga2ox 3, OsGA2ox-3, GA2ox3, GA2ox-3, GA2ox4,GA20OX1, OsGA20ox1, 20ox1, GA20ox-1, ga20ox1, Os20ox, C20OX2, OsGA20ox2, OsGA20ox-1, GA20ox1, OsGNP1,OsKS4, KS4, KSL4, OsKSL4, DTS2, OsDTS2, OsTPS16, TPS16, TPS8, OsTPS8,OsKAO, kao, CYP88A5, OSKAO, Os KAO, RPE1, KO1,OsGA2ox2, ga2ox 2, OsGA2ox-2,OsCPS1, OsCPS1ent, OsCPS, Os CPS1, OsTPS4, TPS4, TPS29, OsTPS29, OsCPS1-L, OsCPS1-S,sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2, OsPHQ1, OsPHq1, PHq1,d35, d35(t), dwf30, OsKOL2, KOL2, KO2, OsKO2, OSKO2, KO, CYP701A, CYP701A6, Os KO2, OsKOL2/CYP701A,OsCPS4, CYC1, OsCYC1, OsCyc1, cpsl3, OsCPSL3, OsCPSsyn, OsCyc1/OsCPS4, OsTPS15, Os-CPS4, TPS11, OsTPS11,OsKS9, KS9, KSL9, OsKSL9,OsCPS3,OsKO3, OsKOL3,OsKO5, OSKOL5, KOS2, OsKOS2, CYP701A9, OsCYP701A9, OsKO1, KO1,OsKO4, OsKOL4, KOS1, CYP701A8, OsCYP701A8, OsKO2, CYP701A8/OsKOL4,OsKS5, KS5, KSL5, OsKSL5, KSL5i, OsKSL5i, KSL5j, OsKSL5j, KS6, OsKS6, OsTPS8, TPS45, OsTPS45,OsKS3, OSKS3, KS3, KSL3, OsKSL3, OsKS2, KS2, OsTPS25, TPS39, OsTPS39,OsKS6, KS6, KSL6, OsKSL6, KS5, OsKS5, OsTPS9, TPS9, TPS14, OsTPS14,OsKS8, KS8, KSL8, OsKSL8, DTC2, OsDTC2, OsDTC2/OsKS8, OsTPS32, TPS17, OsTPS17, KSL11, OsKSL11,OsKO1, OSKO1, OSKOL1, OsKOS4, CYP701A7,OsGA3ox1, GA3ox1, OsGA3OX1,d18-h  (d18-I, d18h), dwf15, d25, d18, d18-k, d18-AD, d18-dy, OsGA3ox2, ga3ox2, OsGA3OX2, GA3OX2, OsGA3ox-2, GA3ox-2, GA3ox1,OsGA20ox4, ga20ox4, GA20ox2, Prl5, Prl5/GA20ox4, OsPrl5,GA2OX4, OsGA2ox4, ga2ox 4, OsGA2ox-4, OsSBI,OsKS7, KS7, KSL7, OsKSL7, DTC1, OsDTC1, OsKS3, OsDTC1/OsKS7, OsTPS6, TPS6, TPS38, OsTPS38,OsGA20ox3, ga20ox3,OsKS2, KSL2, OsKSL2, OsTPS27, TPS27, TPS2, OsTPS2,OsGA2ox1, ga2ox-1, OsGA2ox-1, ga2ox, ga2ox 1, GA2ox1
20791	12700762	Hayama, R., Yokoi, S., Tamaki, S., Yano, M. and Shimamoto, K.	Adaptation of photoperiodic control pathways produces short-day flowering in rice.	Nature	422	719-722	2003	HD3A,GI,SE1	Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,OsGI, Gi, Os-GI,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, OsHd1,  Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21
20792	15316288	Itoh, H., Tatsumi, T., Sakamoto, T., Otomo, K., Toyomasu, T., Kitano, H., Ashikari, M., Ichikawa, S. and Matsuoka, M.	A rice semi-dwarf gene, Tan-Ginbozu (D35), encodes the gibberellin biosynthesis enzyme, ent-kaurene oxidase.	Plant Mol. Biol.	54	533-547	2004	D35,KO1,KO3,KO5,KAO,KO4	d35, d35(t), dwf30, OsKOL2, KOL2, KO2, OsKO2, OSKO2, KO, CYP701A, CYP701A6, Os KO2, OsKOL2/CYP701A,OsKO1, OSKO1, OSKOL1, OsKOS4, CYP701A7,OsKO3, OsKOL3,OsKO5, OSKOL5, KOS2, OsKOS2, CYP701A9, OsCYP701A9, OsKO1, KO1,OsKAO, kao, CYP88A5, OSKAO, Os KAO, RPE1, KO1,OsKO4, OsKOL4, KOS1, CYP701A8, OsCYP701A8, OsKO2, CYP701A8/OsKOL4
20793	11536429	Ito, Y., Eiguchi, M. and Kurata, N.		Genesis	30	231-238	2001	OSH1,OSKN2,OSH6,OSH15	OSKN1, Oskn1, OsKN1, OSH1/Oskn1, HB75,OsKn2, OsH71, HOS9, OSH71, OSH71/Oskn2,OsH6, HOS16,OSH15, OsH15, OSKN3, Oskn3, HOS3, D6, d6, OSH15/Oskn3, HB253, H15, OsKNOX3, KNOX3
20794	9869408	Kang, H.-G., Jeon, J.-S., Lee, S. and An, G.	Identification of class B and class C floral organ identity genes from rice plants.	Plant Mol. Biol.	38	1021-1029	1998	MADS4	OsMADS4, PI1, DLN140, OsDLN140
20797	12407188	Kojima, S., Takahashi, Y., Kobayashi, Y., Monna, L., Sasaki, T., Araki, T. and Yano, M.		Plant Cell Physiol.	43	1096-1105	2002	RFT1,HD3A	FT-L 3, OsFTL3, FTL3, FT-L3, RFT, OsRFT1,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a 
20798	11237465	Komatsu, M., Maekawa, M., Shimamoto, K. and Kyozuka, J.	The LAX1 and FRIZZY PANICLE 2 genes determine the inflorescence architecture of rice by controlling rachis-branch and spikelet development.	Dev. Biol.	231	364-373	2001	FZP,LAX1	fzp*, fzp, OsBD1, BD1, OsERF#078, OsERF078, OsERF78, ERF78, AP2/EREBP#133, AP2/EREBP133, BFL1, SGDP7, OsSGDP7,lax, lax(lx), lx, OsbHLH123, bHLH123, OsLAX1, BOS1, OsBOS1
20799	8104574	Matsuoka M, Ichikawa H, Saito A, Tada Y, Fujimura T, Kano-Murakami Y.	Expression of a rice homeobox gene causes altered morphology of transgenic plants.	Plant Cell	5(9)	1039-1048	1993	OSH1	OSKN1, Oskn1, OsKN1, OSH1/Oskn1, HB75
20800	12427982	Mori, M., Nomura, T., Ooka, H., Ishizuka, M., Yokka, T. et al.	Isolation and characterization of a rice dwarf mutant with a defect in brassinosteroid biosynthesis.	Plant Physiol.	130	1152-1161	2002	BRD1	brd1, OsDWARF, DWARF, OsBR6ox, BR6ox, CYP85A1, CYP85A4, OsDWF, CYP85A1/OsDWARF, OsBRD1, OsCYP85A1
20802	10753522	Sentoku, N., Sato, Y. and Matsuoka, M.		Dev. Biol.	220	358-364	2000	OSH1,OSKN2,OSH43,OSH6,OSH15	OSKN1, Oskn1, OsKN1, OSH1/Oskn1, HB75,OsKn2, OsH71, HOS9, OSH71, OSH71/Oskn2,OsH43, H43,OsH6, HOS16,OSH15, OsH15, OSKN3, Oskn3, HOS3, D6, d6, OSH15/Oskn3, HB253, H15, OsKNOX3, KNOX3
20803	15509765	Suzaki, T., Sato, M., Ashikari, M., Miyoshi, M., Nagato, Y. and Hirano, H.-Y.	The gene FLORAL ORGAN NUMBER1 regulates floral meristem size in rice and encodes a leucine-rich repeat receptor kinase orthologous to Arabidopsis CLAVATA1.	Development	131	5649-5657	2004	FON1	OsFON1, fon1, OsRLCK219, RLCK219
20804	11743085	Yano, M., Kojima, S., Takahashi, Y, Lin, H. and Sasaki, T.	Genetic control of flowering time in rice, a short-day plant.	Plant Physiol.	127	1425-1429	2001	SE1,HD5,HD6,HD3A,HD4,HD7,HD9,qHD8(t),HD2	Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, OsHd1,  Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,Hd5(t)*, Hd5, qHD5, HAP3H, OsHAP3H, NF-YB, CBF-A, DTH8 , qHD5(t)*, Ghd8, Ghd8/DTH8, Lhd1, NF-YB11, OsNF-YB11, NFYB11, LH8, DTH8/Ghd8, RH8, DTH8/Ghd8/LHD1, CAR8, DTH8/Ghd8/ OsHAP3H, EF8, OsEF8,Hd6(t)*, OSCKA2, OsCKA2, CKA2, OsCKA2-1, CKA2-1, Hd6/CK2alpha, CK2alpha,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,Hd4(t), qHD4(t), qHD4,Hd7(t), qHD7(t),Hd9(t), qHD9(t),Hd8(t),Hd2(t), Hd2, qHD2(t), OsPRR37, Os-PRR37, PRR37, Prr4, OsPRR4, DTH7, Os DTH7, OsCCT28, CCT28, Ghd7.1, PRR37/Hd2, EH7-2, EH7-2/Hd2, Hd2/PRR37, PRR37-1a, PRR37-1b, PRR37-1c, PRR37-2a, PRR37- 2, HD7.2
20810	15071728	Liu, Z.L., F.P. Han, M. Tan, X.H. Shan, Y.Z. Dong, X.Z. Wang, G. Fedak, S. Hao and B. Liu	Activation of a rice endogenous retrotransposon Tos17 in tissue culture is accompanied by cytosine demethylation and causes heritable alteration in methylation pattern of flanking genomic regions.	Theor. Appl. Genet.	109 (1)	200-209	2004	TOS17	Tos17, Osr21, Tos17chr10, Tos17_Chr10, Tos17chr7, Tos17_Chr7
20812	15114474	Saito, K., Y. Hayano-Saito, W. Maruyama-Funatsuki, Y. Sato and A. Kato	Physical mapping and putative candidate gene identification of a quantitative trait locus Ctb1 for cold tolerance at the booting stage of rice.	Theor. Appl. Genet.	109 (3)	515-522	2004	qCTB-4-1(t) (Ctb-1, Ctb1)	qCTB-4-1(t) (Ctb-1, Ctb1)
20813	15088086	Zhai, W., C. Chen, X. Zhu, X. Chen, D. Zhang, X. Li and L. Zhu	Analysis of T-DNA-Xa21 loci and bacterial blight resistance effects of the transgene Xa21 in transgenic rice.	Theor. Appl. Genet.	109 (3)	534-542	2004	XA21	Xa21*, Xa21, OsXA21
20814	15105992	Aluko, G., C. Martinez, J. Tohme, C. Castano, C. Bergman and J.H. Oard	QTL mapping of grain quality traits from the interspecific cross Oryza sativa x O. glaberrima.	Theor. Appl. Genet.	109 (3)	630-639	2004	qBR-1(t) (br1),qBR-7(t) (br7),qBR-8(t) (br8),qHR-1-2(t) (hr1),qHR-3(t) (hr3),qHR-6(t) (hr6),qHR-8(t) (hr8),qHR-11(t) (hr11),qRB-2(t) (rb2),qRB-4(t) (rb4),qRB-7(t) (rb7),qRB-10(t) (rb10),qAMY-3(t) (amy3),qAMY-8(t) (amy8),qALK-6-1(t) (alk6-1),qALK-6-2(t) (alk6-2),qMR-5(t) (mr5),qPRO-1(t) (pro1),qPRO-2(t) (pro2),qMR-7(t) (mr7),qAMY-6(t) (amy6),qPRO-6(t) (pro6),qPRO-11(t) (pro11),qGL-3(t) (gl3),qGL-6(t) (gl6),qLWR-1(t) (lwr1),qLWR-6(t) (lwr6)	qBR-1(t) (br1),qBR-7(t) (br7),qBR-8(t) (br8),qHR-1-2(t) (hr1),qHR-3(t) (hr3),qHR-6(t) (hr6),qHR-8(t) (hr8),qHR-11(t) (hr11),qRB-2(t) (rb2),qRB-4(t) (rb4),qRB-7(t) (rb7),qRB-10(t) (rb10),qAMY-3(t) (amy3),qAMY-8(t) (amy8),qALK-6-1(t) (alk6-1),qALK-6-2(t) (alk6-2),qMR-5(t) (mr5),qPRO-1(t) (pro1),qPRO-2(t) (pro2),qMR-7(t) (mr7),qAMY-6(t) (amy6),qPRO-6(t) (pro6),qPRO-11(t) (pro11),qGL-3(t) (gl3),qGL-6(t) (gl6),qLWR-1(t) (lwr1),qLWR-6(t) (lwr6)
20815	15103410	Xu, C.G., X.Q. Li, Y Xue, Y.W. Huang, J. Gao and Y.Z. Xing	Comparision of quantitative trait loci controlling seedling characteristics at two seedling stages using rice recombinant inbred lines.	Theor. Appl. Genet.	109 (3)	640-647	2004	qTDW-5-2 (qTDW5-2),qPH-1-6(t) (qPH1),qPH-2-1(t),qPH-4-5 (t) (qPH4),qPH-5-4(t) (qPH5),qPH-6-3(t) (qPH6),qPH-10-2(t) (qPH10),qPH-11-3(t) (qPH11),qMRL-3-1(t) (qMRL3),qMRL-5-2(t) (qMRL5),qMRL-7-1(t) (qMRL7),qMRL-10-1(t) (qMRL10),qMRL-11-1(t) (qMRL11),qMRL-11-2(t) (qwMRL11),qSPW,qSDW-2-1(t) (qSDW2),qSDW-3-2(t) (qSDW3),qSDW-5-3(t) (qSDW5),qSDW-10-1(t) (qSDW10),qSDW-11-1(t) (qSDW11),qRDW-2-1(t) (qRDW2),qRDW-3-1(t) (qRDW3),qRDW-5-3(t) (qRDW5),qRDW-5-4(t) (qRDW5),qRDW-10-2(t) (qRDW10),qTDW-3-2(t) (qTDW3),qRDW-11-1(t) (qRDW11),qTDW-10-1(t) (qTDW10),qTDW-11-1(t)  (qTDW11),qRSR-4-1(t) (qRSR4),qRSR-11-1(t) (qRSR11)	qTDW-5-2 (qTDW5-2),qPH-1-6(t) (qPH1),qPH-2-1(t),qPH-4-5 (t) (qPH4),qPH-5-4(t) (qPH5),qPH-6-3(t) (qPH6),qPH-10-2(t) (qPH10),qPH-11-3(t) (qPH11),qMRL-3-1(t) (qMRL3),qMRL-5-2(t) (qMRL5),qMRL-7-1(t) (qMRL7),qMRL-10-1(t) (qMRL10),qMRL-11-1(t) (qMRL11),qMRL-11-2(t) (qwMRL11),qSDW-1-2(t) (qSDW1),qSDW-2-1(t) (qSDW2),qSDW-3-2(t) (qSDW3),qSDW-5-3(t) (qSDW5),qSDW-10-1(t) (qSDW10),qSDW-11-1(t) (qSDW11),qRDW-2-1(t) (qRDW2),qRDW-3-1(t) (qRDW3),qRDW-5-3(t) (qRDW5),qRDW-5-4(t) (qRDW5),qRDW-10-2(t) (qRDW10),qTDW-3-2(t) (qTDW3),qRDW-11-1(t) (qRDW11),qTDW-10-1(t) (qTDW10),qTDW-11-1(t)  (qTDW11),qRSR-4-1(t) (qRSR4),qRSR-11-1(t) (qRSR11)
20816		Yasuhiro Suzuki., Nagamine, T. and Okuno, K.	Genetic analysis of a null-allele for lipoxygenase-3 in rice seeds.	Euphytica	91	99-101	1996		
20817		Yasuhiro Suzuki., Yasui, T., Ushio Matsukura. and Terao, J.	Oxidative stability of bran lipids from rice variety [Oryza sativa (L.)] lacking lipoxygenase-3 in seeds.	J. Agric. Food Chem.	44	3479-3483	1996		
20818	10552425	Yasuhiro Suzuki., Ise, K., Li, C., Honda, I., Iwai, Y., and Ushio Matsukura.	Volatile components in stored rice [Oryza sativa (L.)] of varieties with and without lipoxygenase-3 in seeds.	J. Agric. Food Chem.	47	1119-1124	1999		
20819		Yasuhiro Suzuki.	Screening and mode of inheritance of a rice variety lacking lipoxygenase-3.	Gamma Field Symposia	33	51-62	1994		
20820		Yasuhiro Suzuki. and Ushio Matsukura.	Lipoxygenase activity in maturing and germinating rice seeds with and without lipoxygenase-3 in mature seeds.	Plant Sci.	125	119-126	1997	LOX3	Lox3*, lox3(t), LOX-3, Lox3, OsLOX4, LOX4
20821		Ise, K., Suzuki, Y., Jianhua, X., Luyuan, D., Changrong, Y., Kudo, S., and Mekawa, M.	Germplasm lacking lipoxygenase-3 in a wide diversity of rice genetic resources in Yunnan, China. (In Japanese with English summary)	Japan. J. Trop. Agr.	46	33-38	2002		
20822	15221143	Miyamoto, N., Y. Goto, M. Matsui, Y. Ukai, M. Morita and K. Nemoto	Quantitative trait loci for phyllochron and tilleriing in rice.	Theor. Appl. Genet.	109 (4)	700-706	2004	qPHYLCHR-4-1(t) (phyllochron),qPHYLCHR-10-1(t) (phyllochron),qPHYLCHR-11-1(t) (phyllochron),qTN-2-1(t) (Tiller number),qTN-5-1(t) (tiller number),qTN-8-1(t) (tiller number),qT2DM-2-1(t),qT2DM-6-1(t),qT2pDM-2-1(t),qT22DM-2-1(t),qT22DM-5-1(t) qT22D qT22DM-5-1(t),qT3pDM-1-1(t),qT31DM-2-1(t),qT31DM-5-1(t),qT4pDM-1-1(t),qT4pDM-3-1(t)	qPHYLCHR-4-1(t) (phyllochron),qPHYLCHR-10-1(t) (phyllochron),qPHYLCHR-11-1(t) (phyllochron),qTN-2-1(t) (Tiller number),qTN-5-1(t) (tiller number),qTN-8-1(t) (tiller number),qT2DM-2-1(t),qT2DM-6-1(t),qT2pDM-2-1(t),qT22DM-2-1(t),qT22DM-5-1(t) qT22D qT22DM-5-1(t),qT3pDM-1-1(t),qT31DM-2-1(t),qT31DM-5-1(t),qT4pDM-1-1(t),qT4pDM-3-1(t)
20823	15375618	Shimizu, A., S. Yanagihara, S. Kawasaki and H. Ikehashi	Phosphorous deficiency-induced root elongation and its QTL in rice (Oryza sativa L.).	Theor. Appl. Genet.	109 (7)	1361-1368	2004	qPHO-6(t)	qPHO-6(t)
20824	15322754	Jain, A., R. Ariyadasa, A. Kumar, M.N. Srivastava, M. Hohan and S. Nair	Tagging and mapping of a rice gall midge resistance gene, GM8, and development of SCARs for use in marker-aided selection and gene pyramiding.	Theor. Appl. Genet.	109 (7)	1377-1384	2004	GM8,GM4	Gm8(t), Gm8,Gm4(t)*, Gm4(t), Gm4, Gm4t
20825	15480535	Yoshida, K., N.T. Miyashita and T. Ishii	Nucleotide polymorphism in the Adh1 locus region of the wild rice Oryza rufipogon.	Theor. Appl. Genet.	109 (7)	1406-1416	2004	ADH1	Adh1, Adh1/2, adh1/adh2, OsADH1
20826	15278284	Biradar, S.K., R.M. Sundaram, T. Thirumurugan, J.S. Bentur, S. Amudhan, V.V. Shenoy, B. Mishra, J. Bennett, and N.P. Sarma	Identification of flanking SSR markers for a major rice gall midge resistance gene Gm1 and their validation.	Theor. Appl. Genet.	109 (7)	1468-1473	2004	GM1	Gm1, Gm-1, GM-1
20827	15365628	Yamagishi, J., N. Miyamoto,  S. Hirotsu, R.C. Laza and K. Nemoto	QTLs for branching, floret formation, and pre-flowering floret abortion of rice panicle in a temperate japonica x tropical japonica cross.	Theor. Appl. Genet.	109 (8)	1555-1561	2004	qNFP-2-1(t),qNPBP-2-1(t),qNPBP-4-1(t),qNFPB-9-1(t),qNFPB-11-1(t),qFPFFA-1-1(t),qFPFFA-10-1(t),qFPFFA-11-1(t)	qNFP-2-1(t),qNPBP-2-1(t),qNPBP-4-1(t),qNFPB-9-1(t),qNFPB-11-1(t),qFPFFA-1-1(t),qFPFFA-10-1(t),qFPFFA-11-1(t)
20828	15549232	Obara, M., T. Sato, S. Sasaki, K. Kashiba, A. Nagano, I. Nakamura, T. Ebitani, M. Yano, T. Yamaya	Iderntification and characterization of a QTL on chromosome 2 for cytosolic glutamine synthetase content and panicle number in rice.	Theor. Appl. Genet.	110 (1)	1-11	2004	qPNN-2-1(t) (Pnn1)	qPNN-2-1(t) (Pnn1)
20829	15551043	Wan, X.Y., J.M. Wan, C.C. Su, C.M. Wang, W.B. Shen, J.M. Li, H.L. Wang, L. Jiang, S.J. Liu, L.M. Chen, H. Yasui, and A. Yoshimura	QTL detection for eating quality of cooked rice in a population of chromosome segment substitution lines.	Theor. Appl. Genet.	110 (1)	71-79	2004	qVC-4-1(t) (qVC-4),qVC-6-1(t) (qVC-6),qEL-3-1(t) (qEL-3),qEL-8-1(t) (qEL-8),qIVOE-8-1(t) (qIVOE-8),qAC-8-1(t) (qAC-8),qAC-9-1(t) (qAC-9a),qAC-9-2(t) (qAC-9b),qAC-12-1(t) (qAC-12),qGT-3-1(t) (qGT-3),qGT-1-1(t) (qGT-1),qGT-6-1(t) (qGT-6),qGC-4-1(t) (qGC-4),qGC-6-4(t) (qGC-6),qGC-11-1(t) (qGC-11),qGC-3-1(t) (qGC-3),qGC-5-1(t) (qGC-5),qIVOE-6-1(t)  (qIVOE-6a, qIVOE-6),qLT-8-1(t) (qLT-8),qLT-4-1(t) (qLT-4),qLT-6-1(t) (qLT-6),qST-8-1(t) (qST-8),qST-4-1(t) (qST-4),qTD-6-1(t) (qTD-6),qTD-8-1(t) (qTD-8)	qVC-4-1(t) (qVC-4),qVC-6-1(t) (qVC-6),qEL-3-1(t) (qEL-3),qEL-8-1(t) (qEL-8),qIVOE-8-1(t) (qIVOE-8),qAC-8-1(t) (qAC-8),qAC-9-1(t) (qAC-9a),qAC-9-2(t) (qAC-9b),qAC-12-1(t) (qAC-12),qGT-3-1(t) (qGT-3),qGT-1-1(t) (qGT-1),qGT-6-1(t) (qGT-6),qGC-4-1(t) (qGC-4),qGC-6-4(t) (qGC-6),qGC-11-1(t) (qGC-11),qGC-3-1(t) (qGC-3),qGC-5-1(t) (qGC-5),qIVOE-6-1(t)  (qIVOE-6a, qIVOE-6),qLT-8-1(t) (qLT-8),qLT-4-1(t) (qLT-4),qLT-6-1(t) (qLT-6),qST-8-1(t) (qST-8),qST-4-1(t) (qST-4),qTD-6-1(t) (qTD-6),qTD-8-1(t) (qTD-8)
20830	15549231	Yang, H., A. You, Z. Yang, F. zhang, R. He, L. Zhu, G. He	High-resolution genetic mapping at the Bph15 locus for brown planthopper resistance in rice (Oryza sativa L.).	Theor. Appl. Genet.	110 (1)	182-191	2004	BPH15,BPH14	RLCK134, OsRLCK134, OsLecRK1, LecRK1, SDRLK-LecRK1, OsSDRLK-LecRK1, OslecRK, lecRK, Bph15, OsBph15, Bph15 (Qbp2), Qbp2, qBPH-4,Bph14 (Qbp1), Bph14, Qbp1, qBPH-3
20832	15672255	Song, X., S.Q. Qinm C.G. Xu, X.H. Li, and Q. Zhang	Genetic dissection of embryo sac fertility, pollen fertility, and their cotributions to spikelet fertility of intersubspecific hybrids in rice.	Theor. Appl. Genet.	110 (2)	205-211	2005	qPF-5-1(t) (pf5),qPF-12-1(t) (pf12),qEF-6-1(t) (Ef6, S5),qSPF-5-1(t) (spf5),qSPF-6-1(t) (spf6),qSPF-8-1(t) (spf8)	qPF-5-1(t) (pf5),qPF-12-1(t) (pf12),qEF-6-1(t) (Ef6, S5),qSPF-5-1(t) (spf5),qSPF-6-1(t) (spf6),qSPF-8-1(t) (spf8)
20833	15549230	Kubo, T. and A. Yoshimura	Epistasis underlying female sterility detected in hybrid breakdown in a Japonica-Indica cross of rice (Oryza sativa L.).	Theor. Appl. Genet.	110 (2)	346-355	2005	HSA1A,HSA3,HSA2,HSA1B	hsa1(t), s(t), hst49,hsa3(t),hsa2(t)*, hsa2(t), hst50,hsa1(t), s(t), hst49, OsHSA1B
20834	15647921	Mei, H.W., Z.K. Li, Q.Y. Shu, L.B. Guo, Y.P. Wang, X.Q. Yu, C.S. Ying and L.J. Luo	Gene actions of QTLs affecting several agronomic traits resolved in a recombinant inbred rice populaton and two backcross populations.	Theor. Appl. Genet.	110 (4)	649-659	2005	qHD-3-3(t) (QHd3),qPH-3-4(t) (QPh3b, QPh3a),qPH-4-2(t) (QPh4),qFLL-3-1(t) (QFll3),qFLW-4-1(t) (QFlw4),qHD-1-1(t) (Hd1a),qHD-1-2(t) (QHd1b),qHD-3-4(t) (QHd3b),qHD-8-2(t) (QHd8),qHD-11-3(t) (QHd11),qHD-12-2(t) (QHd12),qPH-1-7(t) (QPh1a),qPH-1-8(t) (QPh1b),qPH-2-2(t) (QPh2),qPH-3-7(t) (QPh3b),qPH-6-4(t) (QPh6),qPH-8-3(t) (QPh8),qPH-12-2(t) (QPh12),qFLL-1-1(t) (QFll1a),qFLL-1-2(t) (QFll1b),qFLL-4-1(t) (QFll4),qFLL-5-1(t) (QFll5),qFLL-2-2(t) (QFll2),qFLW-2-1(t) (QFlw2),qFLW-3-1(t) (QFlw3),qFLW-6-2(t) (QFlw6),qFLW-8-2 (QFw8a),qFLW-8-3(t) (QFlw8b),qPL-1-4(t) (QPl1a),qPL-1-5(t) (QPl1b),qPL-2-3(t) (QPl2),qPL-5-1(t) (QPl5),qPL-6-2(t) (QPl6),qPL-7-2(t) (QPl7),qSN-1-2(t) (QSn1),qSN-4-1(t) (QSn4),qSN-6-2(t) (QSn6),qSN-9-1(t) (QSn9a),qSN-9-2(t) (QSn9b),qSF-2-1(t) (QSf2),qSF-6-2(t) (QSf6),qPL-8-2(t) (QPl8),qSF-7-2(t) (QSf7),qSF-12-1(t) (QSf12)	qHD-3-3(t) (QHd3),qPH-3-4(t) (QPh3b, QPh3a),qPH-4-2(t) (QPh4),qFLL-3-1(t) (QFll3),qFLW-4-1(t) (QFlw4),qHD-1-1(t) (Hd1a),qHD-1-2(t) (QHd1b),qHD-3-4(t) (QHd3b),qHD-8-2(t) (QHd8),qHD-11-3(t) (QHd11),qHD-12-2(t) (QHd12),qPH-1-7(t) (QPh1a),qPH-1-8(t) (QPh1b),qPH-2-2(t) (QPh2),qPH-3-7(t) (QPh3b),qPH-6-4(t) (QPh6),qPH-8-3(t) (QPh8),qPH-12-2(t) (QPh12),qFLL-1-1(t) (QFll1a),qFLL-1-2(t) (QFll1b),qFLL-4-1(t) (QFll4),qFLL-5-1(t) (QFll5),qFLL-2-2(t) (QFll2),qFLW-2-1(t) (QFlw2),qFLW-3-1(t) (QFlw3),qFLW-6-2(t) (QFlw6),qFLW-8-2 (QFw8a),qFLW-8-3(t) (QFlw8b),qPL-1-4(t) (QPl1a),qPL-1-5(t) (QPl1b),qPL-2-3(t) (QPl2),qPL-5-1(t) (QPl5),qPL-6-2(t) (QPl6),qPL-7-2(t) (QPl7),qSN-1-2(t) (QSn1),qSN-4-1(t) (QSn4),qSN-6-2(t) (QSn6),qSN-9-1(t) (QSn9a),qSN-9-2(t) (QSn9b),qSF-2-1(t) (QSf2),qSF-6-2(t) (QSf6),qPL-8-2(t) (QPl8),qSF-7-2(t) (QSf7),qSF-12-1(t) (QSf12)
20835	15723276	Nakagawa, H., J. Yamagishi, N. Miyamoto, M. Motoyama, M. Yano and K. Nemoto	Flowering response of rice to photoperiod and temperature: a QTL analysis using a phenological model.	Theor. Appl. Genet.	110 (4)	778-786	2005	HD6,SE1,qHD8(t),HD2	Hd6(t)*, OSCKA2, OsCKA2, CKA2, OsCKA2-1, CKA2-1, Hd6/CK2alpha, CK2alpha,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, OsHd1,  Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,Hd8(t),Hd2(t), Hd2, qHD2(t), OsPRR37, Os-PRR37, PRR37, Prr4, OsPRR4, DTH7, Os DTH7, OsCCT28, CCT28, Ghd7.1, PRR37/Hd2, EH7-2, EH7-2/Hd2, Hd2/PRR37, PRR37-1a, PRR37-1b, PRR37-1c, PRR37-2a, PRR37- 2, HD7.2
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20838	15765223	Li, Z., P. Mu, C. Li, H. Zhang, Z. Li, Y. Gao, X. Wang	QTL mapping of root traits in a doubled haploid population from a cross between uplant and lowland japonica rice in three environments.	Theor. Appl. Genet.	110 (7)	1244-1252	2005	qBRT-12-2(t) (brt12a),qBRT-12-3(t) (brt12b)	qBRT-12-2(t) (brt12a),qBRT-12-3(t) (brt12b)
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21051	5365542	Moses, P.B.	The fine structure of meiotic chromosome polarizationand pairing in Locusta migratoria spermatocytes.	Chromosoma	28	1-25	1969		
21052		Nagato, Y.	Rhythmic variations of the growth rate in rice embryo revealed by time series analysis.	Japan. J. Breed.	26	121-129	1976		
21053		Nagato, Y.	Analyses on the growth of embryo in some Gramineae.	Japan. J. Breed.	28	97-105	1978		
21054	14758540	Nonomura, K.I., Nakano, M., Murata, K., Miyoshi, K., Eiguchi, M. et al.	An insertional mutation in the rice PAIR2 gene, the ortholog of Arabidopsis ASY1, results in a defect in homologous chromosome pairing during meiosis.	Molecular Genetics & Genomics (Molecular General Genetics up to 2001)	271	121-129	2004	PAIR2	Pair2, OsPAIR2, OsASY1
21055		Obara, M., Ikeda, K., Itoh, J.-I. and Nagato, Y.	Characterization of leaf lateral symmetry 1 Mutant in Rice.	Breeding Science	54	157-163	2004	GL1	gl1, NUDA/GL-1, NUDA/GL1, NUDA, GL-1, OsWOX3B, OsWOX2, OsWOX3, Os WOX3, WOX3B, WOX2, WOX3, LSY1, OsLSY1, DEP, OsDEP
21056		Poethig, R.S.	Phase change and the regulation of shoot morphogenesis in plants.	Science	250	923-929	1990		
21057		Raghavan, V.	Anther and pollen development in rice (Oryza sativa).	Am. J. Bot.	75	183-196	1988		
21058	10712951	Sasaki, T. and Burr, B.	International Rice Genome Sequencing Project: the effort to completely sequence the rice genome.	Curr. Opin. Plant Biol.	3	138-142	2000		
21059		Satina, S., Blakeslee, A.F. and Avery, A.G.	Demonstration of three germ layers in the shoot apex of Dutura by means of polyploidy in periclinal chimeras.	Am. J. Bot.	27	895-905	1940		
21060		Satoh, H. and  Omura, T.	Induction of mutation by the treatment of fertilized egg cell with N-methyl-N-nitrosourea in rice.	J. Fac. Agr. Kyushu Univ.	24	165-174	1979		
21061	12750344	Satoh, N., Itoh, J.-I. and Nagato, Y.	The SHOOTLESS2 and SHOOTLESS1 genes are involved in both initiation and maintenance of the shoot apical meristem through regulating the number of indeterminate cells.	Genetics	164	335-346	2003	SHL2,SHL1	shl2, SHL2, sh2, OsRDR6, RDR6,shl1, sh1
21062	10679452	Scanlon, M.J.	International Rice Genome Sequencing Project: the effort to completely sequence the rice genome.	Curr. Opin. Plant Biol.	3	31-36	2000		
21063	15131249	Scott, R.J., Spielman, M. and Dickinson, H.G.	Stamen structure and function.	Plant Cell	16	S46-S60	2004		
21064		Sharman B. C. 	Shoot apex in grasses and cereals. 	Nature	149	82-83	1942		
21065	15131247	Skinner, D.J., Hill, T.A. and Gasser, C.S.	Regulation of ovule development.	Plant Cell	16	S32-S45	2004		
21066	2152125	Smyth, D.R., Bowman, J.L. and Meyerowitz, E.M.	Early flower development in Arabidopsis.	Plant Cell	2	755-767	1990		
21067		Stebbins, G.L. and Shah, S.S.	Developmental studies of cell differentiation in the epidermis of monocotyledons : II. Cytological features of stomatal development in the Gramineae	Dev. Biol.	2	477-500	1960		
21068		Sugimoto, N., Takeda, G., Nagato, Y. and Yamaguchi, J.	Temporal and spatial expression pattern of &#945;-amylase gene during germination in rice and barley.	Plant Cell Physiol.	39	323-333	1998		
21069	8970728	Sylvester, A.W., Smith, L. and Freeling, M.	Acquisition of identity in the developing leaf.	Annu. Rev. Cell. Dev. Biol.	12	257-304	1996		
21070	9043079	Telfer, A., Bollman, K.M. and Poethig, R.S.	Phase change and the regulation of trichome distribution in Arabidopsis thaliana	Development	124	645-654	1997		
21072	11201746	Watanabe, Y., Yokobayashi, S., Yamamoto, M. and Nurse, P.	Pre-meiotic S phase is linked to reductional chromosome segregation and recombination.	Nature	409	359-363	2001		
21073	4269097	Westergaard, M. and Wettstein, D.V.	The synaptinemal complex.	Annu. Rev. Genet.	6	71-110	1972		
21074	10631180	Wysocka-Diller, J., Helariutta, Y., Fukaki, H., Malamy, J. and  Benfey, P.N.	Molecular analysis of SCARECROW function reveals a radial patterning mechanism common to root and shoot.	Development	127	595-603	2000		
21075	15075395	Yadegari, R. and Drews, G.N.	Female gametophyte development.	Plant Cell	16	S133-S141	2004		
21076		Zhang, T.B. and Zhu, H.	Duration of different stages of meiosis in pollen mother cells of rice.	RGN	4	67	1987		
21078	15659430	Nori Kurata, Kazumaru Miyoshi, Ken-Ichi Nonomura, Yukiko Yamazaki and Yukihiro Ito	Rice Mutants and Genes Related to Organ Development , Morphogenesis and Physiological Traits	Plant Cell Physiol.	46(1)	48-62	2005	RPL27-2,S1,S22B,S11,S22A_J2,S12,RPL27-1,S14,S22A_J1,S17,S22A_J3,S2,S26,S4,S9,S8,S24,S28,S16,S27,S10,S25,S20,S7,S22,S21,S19,S23,S18,S3,S15,S13,S5,S6	rpl27-2, rpl27, mtRPL27a, S27, S27(t), S27(t)*,,S22(t), S22B,S11(t),S22(t), S22A_j2,S12(t),rpl27-1, rpl27, mtRPL27b, S27, S27(t), S27(t)*,S14(t),S22(t), S22A_j1,S17(t)*,S22(t), S22A_j3,,S26(t), S26(t)*,,,,S24(t), S24(t)*, Sb, F5-Du,S28(t), rpl27-3, rpl27, mtRPL27a,,S27(t), S27(t)*,,S25(t), S25(t)*,S20*, Hst43,S7,S22(t),S21*, Hst44,,S23(t),S18*, Hst39,,S15(S10), S10,CSB, OsCHR745, CHR745, OlCHR,S5-3, S5-4,
21079	12791992	The Rice Chromosome 10 Sequencing Consortium	In-depth view of structure, activity, and evolution of rice chromosome 10	Science	300(5625)	1566-1569	2003		
21081		Abe,F., Kitashiba,H., Kishitani,S. and Toriyama,K.	Isolation of a cDNA clone encoding the alternative oxidase expressed in rice anthers	Sex. Plant Reprod.	10	374-375	1997	AOX1A	Ao1-1, AOX1a, OsAOX1a, AOX 1a
21082	3500172	Abe,K., Emori,Y., Kondo,H., Suzuki,K. and Arai,S.	Molecular cloning of a cysteine proteinase inhibitor of rice (oryzacystatin). Homology with animal cystatins and transient expression in the ripening process of rice seeds.	J. Biol. Chem.	262(35)	16793-16797	1987	OC1	Oc1*, Oc1, OC-I, SPOC-I, OsCP1, Oc, OCI, OsCYS1, OsPR6b, PR6b
21083		Abe,K., Emori,Y., Kawasaki,H., Kondo,H., Suzuki,K. and Arai,S.	Organization and primary sequence of multiple genes encoding type II mRNA species of rice prepro-glutelin	Agric. Biol. Chem.	53(11)	2969-2973	1989	GLUA2	Glua2*, Glua2, GLUA-2, GluA-2, Glu20, GluA2, OsEnS-137
21084	7678765	Adachi,T., Izumi,H., Yamada,T., Tanaka,K., Takeuchi,S., Nakamura,R. and Matsuda,T.	Gene structure and expression of rice seed allergenic proteins belonging to the alpha-amylase/trypsin inhibitor family.	Plant Mol. Biol.	21(2)	239-248	1993	_,_	RA17, RAP, RAG1, OsEnS-97,RAG2, RA14B, RA14, OsEnS-98
21086	11454775	Adams,K.L., Rosenblueth,M., Qiu,Y.L. and Palmer,J.D.	Multiple losses and transfers to the nucleus of two mitochondrial succinate dehydrogenase genes during angiosperm evolution.	Genetics	158(3)	1289-1300	2001		
21087	10903912	Agrawal,G.K., Jwa,N.S. and Rakwal,R.	A novel rice (Oryza sativa L.) acidic PR1 gene highly responsive to cut, phytohormones, and protein phosphatase inhibitors.	Biochem. Biophys. Res. Commun.	274(1)	157-165	2000	PR1A	OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1, OsPR1b, PR1alpha, OsPR1alpha
21088	11244106	Agrawal,G.K., Yamazaki,M., Kobayashi,M., Hirochika,R., Miyao,A. and Hirochika,H.	Screening of the rice viviparous mutants generated by endogenous retrotransposon Tos17 insertion. Tagging of a zeaxanthin epoxidase gene and a novel ostatc gene.	Plant Physiol.	125(3)	1248-1257	2001	TATC,ABA1	OsTATC, OsTatC, TatC,OsABA1, Zep1, OsAba1, Aba2, OsAba2, OsZep1, Zep, OsZep, Aba1, OsABA2, Osaba1, OsZEP-1, OsZEP, OSZEP1, ZEP1, ZEP
21089	12074577	Agrawal,G.K., Rakwal,R. and Iwahashi,H.	Isolation of novel rice (Oryza sativa L.) multiple stress responsive MAP kinase gene, OsMSRMK2, whose mRNA accumulates rapidly in response to environmental cues.	Biochem. Biophys. Res. Commun.	294(5)	1009-1016	2002	MSRMK2	OsMSRMK2, OsMAPK5, OsMAP1, OsMPK3, OsBIMK1, OsMAPK2, MPK5, BIMK1, MAPK2, MAPK5, MPK3, OsMPK5, OsMAPK3, OsMAPK5b, MAPK3
21090		Agrawal,G.K., Rakwal,R., Jwa,N.-S., Han,K.-S. and Agrawal,V.P.	Molecular cloning and mRNA expression analysis of the first rice jasmonate biosynthetic pathway gene allene oxide synthase	Plant Physiol. Biochem.	40(9)	771-782	2002	AOS1	OsAOS, OsAOS1, CYP74A1, OsAOS2, AOS2
21091	12207666	Agrawal,G.K., Rakwal,R., Jwa,N.S. and Agrawal,V.P.	Characterization of a novel rice gene OsATX and modulation of its expression by components of the stress signalling pathways.	Physiol. Plantarum	116(1)	87-95	2002	ATX	OsATX, OsHMP7, HMP7, OsHMP07
21092	12507518	Agrawal,G.K., Agrawal,S.K., Shibato,J., Iwahashi,H. and Rakwal,R.	Novel rice MAP kinases OsMSRMK3 and OsWJUMK1 involved in encountering diverse environmental stresses and developmental regulation.	Biochem. Biophys. Res. Commun.	300(3)	775-783	2003	WJUMK1,MAPK4	OsMPK20-4, MPK20-4, OsWJUMK, OsWJUMK1, WJUMK, MAPK8, OsMPK8, MPK8, OsMAPK20-4, MAPK20-4, OsMPKG1, MPKG1,OsMAPK4, OsMAP2, OsMSRMK3, OsMPK4, OsMPK7, MAP2, MSRMK3, MPK4, MPK7, MAPK7, OsMAPK7
21093		Agrawal,G.K., Jwa,N.-S., Han,K.-S., Agrawal,V.P. and Rakwal,R.	Isolation of a novel rice PR4 type gene whose mRNA expression is modulated by blast pathogen attack and signaling components	Plant Physiol. Biochem.	41(1)	81-90	2003	PR4	OsPR4, OsPR4a, PR4a, OsPR-4
21094	14559225	Agrawal,G.K., Jwa,N.S., Shibato,J., Han,O., Iwahashi,H. and Rakwal,R.	Diverse environmental cues transiently regulate OsOPR1 of the &quot;octadecanoid pathway&quot; revealing its importance in rice defense/stress and development.	Biochem. Biophys. Res. Commun.	310(4)	1073-1082	2003	AOC,OPR5,OPR1,OG1,AOS1,OPR4,OPR8,OPR6,OPR10	OsAOC, AOC1, OsAOC1, HB, CPM2, OsAOC4, AOC4,OsOPR5, OsOPR6, OsOPR06-2, OPR4,OsOPR1, OsOPR2, OsOPR11, OsOPR06-6, OPDAR1, OsOPR, OPDAR,OsOPR7, OPR7, OsOPR13, OsOPR3, OsOPR5, OsOPR9, OsOPR08-1,  OPR13, OPR3, OPR5, OPR9, OPR08-1, OsOPR8, OPR8,OsAOS, OsAOS1, CYP74A1, OsAOS2, AOS2,OsOPR4, OsOPR10, OsOPR06-3, OsOPR7,OsOPR8, OsOPR7, OsOPR02-1,OsOPR6, OsOPR4, OsOPR06-1,OsOPR10, OsOPR12, OsOPR01-1
21095		Aguan,K., Sugawara,K., Suzuki,N. and Kusano,T.	Isolation of genes for low-temperature-induced proteins in rice by a simple subtractive method	Plant Cell Physiol.	32(8)	1285-1289	1991	LIP5,LIP19,_	OsLEA24, LEA24, WSI724, OsWSI724, OsLIP5,Lip19, lip19, OsLIP9, OsbZIP38, bZIP38,LIP9, lip9, 
21096	8341255	Aguan,K., Sugawara,K., Suzuki,N. and Kusano,T.	Low-temperature-dependent expression of a rice gene encoding a protein with a leucine-zipper motif.	Mol. Gen. Genet.	240(1)	1-8	1993	LIP19	Lip19, lip19, OsLIP9, OsbZIP38, bZIP38
21097	7610181	Akagi,H., Baba,T., Shimada,H. and Fujimura,T.	Nucleotide sequence of a stearoyl-acyl carrier protein desaturase cDNA from developing seeds of rice.	Plant Physiol.	108(2)	845-846	1995	_	
21098	14968308	Akagi,H., Nakamura,A., Yokozeki-Misono,Y., Inagaki,A., Takahashi,H., Mori,K. and Fujimura,T.	Positional cloning of the rice Rf-1 gene, a restorer of BT-type cytoplasmic male sterility that encodes a mitochondria-targeting PPR protein.	Theor. Appl. Genet.	108(8)	1449-1457	2004	RF1	Rf1 (Rf-1), rf-1, PPR791, PPR8-1, Rf-1, Rf1, Rf-1A, Rf5, Rf1a, RF5, Rf5(t)*(Rf(t)*), RF1A, PPR6, PLS31, OsPLS31
21100	11779628	Akama,K., Akihiro,T., Kitagawa,M. and Takaiwa,F.	Rice (Oryza sativa) contains a novel isoform of glutamate decarboxylase that lacks an authentic calmodulin-binding domain at the C-terminus.	Biochim. Biophys. Acta	1522(3)	143-150	2001	GAD1,GAD2	OsGAD1, GDC,OsGAD2
21101	9112785	Akashi,K. and Small,I.D.	A cDNA clone encoding rice histidyl-tRNA synthetase (accession no. Z85984) (PGR97-062)	Plant Physiol.	113(4)	1464	1997	_	
21103		Akiyama,T. and Pillai,M.A.	Isolation and characterization of a gene for a repetitive proline rich protein (OsPRP) down-regulated during submergence in rice (Oryza sativa)	Physiol. Plantarum	118(4)	507-513	2003	_	OsPRP, OsPRP1, PRP1, OsRePRP1.1, RePRP1.1
21104	8973371	Aliyeva,E., Metz,A.M. and Browning,K.S.	Sequences of two expressed sequence tags (EST) from rice encoding different cap-binding proteins.	Gene	180(1-2)	221-223	1996	_,EIFISO4E	p26,p28, eIFiso4E, OsEIFISO4E
21105	7669811	Alvarez,A.M., Adachi,T., Nakase,M., Aoki,N., Nakamura,R. and Matsuda,T.	Classification of rice allergenic protein cDNAs belonging to the alpha-amylase/trypsin inhibitor gene family.	Biochim. Biophys. Acta	1251(2)	201-204	1995	_,_,_	RAG2, RA14B, RA14, OsEnS-98,RA5B, OsEnS-99,RA16, OsEnS-100
21106	2545704	Anderson,J.M., Hnilo,J., Larson,R., Okita,T.W., Morell,M. and Preiss,J.	The encoded primary sequence of a rice seed ADP-glucose pyrophosphorylase subunit and its homology to the bacterial enzyme.	J. Biol. Chem.	264(21)	12238-12242	1989	AGPS2	OsAGPS2a, AGPS2A, AGPS2B, OsAGPS2, osagps2, APS2, APS2a, APS2b, AGPS2a, APGS2b, OsAGPS2b, AGPP, GAS8, OsAPS2, OsAPS2a, OsAPS2b
21107	1847888	Anderson,J.M., Larsen,R., Laudencia,D., Kim,W.T., Morrow,D., Okita,T.W. and Preiss,J.	Molecular characterization of the gene encoding a rice endosperm-specific ADPglucose pyrophosphorylase subunit and its developmental pattern of transcription.	Gene	97(2)	199-205	1991	AGPS2	OsAGPS2a, AGPS2A, AGPS2B, OsAGPS2, osagps2, APS2, APS2a, APS2b, AGPS2a, APGS2b, OsAGPS2b, AGPP, GAS8, OsAPS2, OsAPS2a, OsAPS2b
21108		Ansari,M.I., Lee,R.H. and Chen,S.C.G.	A novel senescence-associated gene encoding -aminobutyric acid (GABA):pyruvate transaminase is upregulated during rice leaf senescence	Physiol. Plantarum	123(1)	1-8	2005	GABA-T,_	Osl2, l2, OsGABA-T,OsGABA-T, GABA-T
21109	8286405	Aoki,H. and Ida,S.	Nucleotide sequence of a rice root ferredoxin-NADP+ reductase cDNA and its induction by nitrate.	Biochim. Biophys. Acta	1183(3)	553-556	1994	_	FNR, PetH, OsFNR
21110	8016278	Aoki,H., Doyama,N. and Ida,S.	Sequence of a cDNA encoding rice (Oryza sativa L.) leaf ferredoxin-NADP+ reductase.	Plant Physiol.	104(4)	1473-1474	1994	_	OsLFNR2, LFNR2, FNR, LFNR1, Os-LFNR1, OsLFNR1, PetH-1
21111	7748889	Aoki,H., Tanaka,K. and Ida,S.	The genomic organization of the gene encoding a nitrate-inducible ferredoxin-NADP+ oxidoreductase from rice roots.	Biochim. Biophys. Acta	1229(3)	389-392	1995	_	FNR, PetH, OsFNR
21113	12668768	Aoki,N., Hirose,T., Scofield,G.N., Whitfeld,P.R. and Furbank,R.T.	The sucrose transporter gene family in rice.	Plant Cell Physiol.	44(3)	223-232	2003	SUT3,SUT5,SUT2,SUT4,SUT1	OsSUT3(t), OsSUT3, SUC3, OsSUT2,OsSUT5(t), OsSUT5Z, OsSUT5,OsSUT2(t), SUT2M, OsSUT2, OsSUT2M, OsSUT5,OsSUT4(t), OsSUT4,OsSUT1, OsSUT2
21114	10359080	Arimura,S., Takusagawa,S., Hatano,S., Nakazono,M., Hirai,A. and Tsutsumi,N.	A novel plant nuclear gene encoding chloroplast ribosomal protein S9 has a transit peptide related to that of rice chloroplast ribosomal protein L12.	FEBS Lett.	450(3)	231-234	1999	AL1,WGL2	RPL12-2, rpl12-2, CL12, OsRPL12-2, L12/AL1, OsAL1,rps9, OsRPS9, OsWGL2
21115	9445479	Arioli,T., Peng,L., Betzner,A.S., Burn,J., Wittke,W., Herth,W., Camilleri,C., Hofte,H., Plazinski,J., Birch,R., Cork,A., Glover,J., Redmond,J. and Williamson,R.E.	Molecular analysis of cellulose biosynthesis in Arabidopsis.	Science	279(5351)	717-720	1998	CESA1	OsCesA1, OsCesA-1, OsCESA1, OS_CESA01, CesA1
21116	9390447	Arrendondo-Peter,R., Hargrove,M.S., Sarath,G., Moran,J.F., Lohrman,J., Olson,J.S. and Klucas,R.V.	Rice hemoglobins. Gene cloning, analysis, and O2-binding kinetics of a recombinant protein synthesized in Escherichia coli.	Plant Physiol.	115(3)	1259-1266	1997	Hb1,Hb2	HB1, OsHB1, GLB1A, rHb1, ORYsa GLB1a, nsHb1, OsNSHB1, hb1, nsHb, OsPgb1.1, Pgb1.1,HB2, OsHB2, OsNSHB2, hb2, GLB1b, ORYsa GLB1b, OsPgb1.2, Pgb1.2
21117	8520124	Asakura,T., Abe,K. and Arai,S.	Evidence for the occurrence of multiple aspartic proteinases in rice seeds.	Biosci. Biotechnol. Biochem.	59(9)	1793-1794	1995	_	Oryzasin
21118	7556174	Asakura,T., Watanabe,H., Abe,K. and Arai,S.	Rice aspartic proteinase, oryzasin, expressed during seed ripening and germination, has a gene organization distinct from those of animal and microbial aspartic proteinases.	Eur. J. Biochem.	232(1)	77-83	1995	_	Oryzasin
21119	12091721	Asano,T., Kusano,H., Okuda,T., Kubo,N., Shimada,H. and Kadowaki,K.	Rpp16 and Rpp17, from a common origin, have different protein characteristics but both genes are predominantly expressed in rice phloem tissues.	Plant Cell Physiol.	43(6)	668-674	2002	RPP16,RPP17	Rpp16(t), ERG3, OsERG3, OsC2DP36, C2DP36,Rpp17, FIERG1, OsERG1, OsERG1a, OsERG1b, OsC2DP8, C2DP8
21120	10468600	Ashikari,M., Wu,J., Yano,M., Sasaki,T. and Yoshimura,A.	Rice gibberellin-insensitive dwarf mutant gene Dwarf 1 encodes the alpha-subunit of GTP-binding protein.	Proc. Natl. Acad. Sci. U.S.A.	96(18)	10284-10289	1999	D1	d1, GPA1, GA1, OsGA1, RGA1, dwf1, XA7, RGA, D1/RGA1, D89, TGW5, OsTGW5, SRG5, OsSRG5
21121	15976269	Ashikari,M., Sakakibara,H., Lin,S., Yamamoto,T., Takashi,T., Nishimura,A., Angeles,E.R., Qian,Q., Kitano,H. and Matsuoka,M.	Cytokinin oxidase regulates rice grain production.	Science	309(5735)	741-745	2005	CKX10,CKX7,CKX11,CKX6,CKX8,CKX3,CKX4,CKX9,CKX5,CKX1,GN1B,GN2,GN4,GN5,PH4,GN3,PH3,PH2,PH1,GN1A	OsCKX10,OsCKX7,OsCKX11,OsCKX6,OsCKX8,OsCKX3, ckx3,OsCKX4, ckx4, OsSCRM, OsSCRM2, SCRM, SCRM2,OsCKX9,OsCKX5, ckx5,OsCKX1,Gn1b,Gn2,Gn4,Gn5,Ph4,Gn3,Ph3,Ph2,Ph1,Gn1a, OsCKX2, CKX2, ckx2, Gn1a/OsCKX2, Os CKX2, CKX2/Gn1a
21122	11487698	Aubert,D., Chen,L., Moon,Y.H., Martin,D., Castle,L.A., Yang,C.H. and Sung,Z.R.	EMF1, a novel protein involved in the control of shoot architecture and flowering in Arabidopsis.	Plant Cell	13(8)	1865-1875	2001	EMF1	OsEMF1
21123	9358062	Aubourg,S., Takvorian,A., Cheron,A., Kreis,M. and Lecharny,A.	Structure, organization and putative function of the genes identified within a 23.9-kb fragment from Arabidopsis thaliana chromosome IV.	Gene	199(1-2)	241-253	1997	EIF4A1	eIF-4a, EIF4A, OseIF4A, eIF4A1, elF-4A, eIF4A-1, OsRH4
21124	1731971	B.S. and Schilperoort,R.A.	Structure and expression of a root-specific rice gene.	Plant Mol. Biol.	18(1)	161-164	1992	WAK62	OsWAK62, GOS9
21125	1302635	B.S., F., Rueb,S., Katagiri,F., Chua,N.H., Schilperoort,R.A. and Hensgens,L.A.	The promoter of the rice gene GOS2 is active in various different monocot tissues and binds rice nuclear factor ASF-1.	Plant J.	2(6)	837-844	1992	_	GOS2, OseIF1, OsGOS2, SUI1, PtfS 
21126	7518089	Baba,T., Nishihara,M., Mizuno,K., Kawasaki,T., Shimada,H., Kobayashi,E., Ohnishi,S., Tanaka,K. and Arai,Y.	Identification, cDNA cloning, and gene expression of soluble starch synthase in rice (Oryza sativa L.) immature seeds.	Plant Physiol.	103(2)	565-573	1993	SSI	OsSSI, SSS 1, SSS1, SS1, OsSS1, SSSI, OsSSSI
21127	12466291	Bai,J., Pennill,L.A., Ning,J., Lee,S.W., Ramalingam,J., Webb,C.A., Zhao,B., Sun,Q., Nelson,J.C., Leach,J.E. and Hulbert,S.H.	Diversity in Nucleotide Binding Site-Leucine-Rich Repeat Genes in Cereals.	Genome Res.	12(12)	1871-1884	2002	_,_,_,_,_,_,_,_,_,_	rNBS8,rNBS10,rNBS17,rNBS36,rNBS41,rNBS56,rNBS78,rNBS44,YR16, YR29, rNBS42,OsRP1L1, RP1L1, OsBBR1, BBR1, rNBS33
21128	12376644	Banuelos,M.A., Garciadeblas,B., Cubero,B. and Rodriguez-Navarro,A.	Inventory and functional characterization of the HAK potassium transporters of rice.	Plant Physiol.	130(2)	784-795	2002	HAK17,HAK4,HAK5,HAK16,HAK10,LCS,HAK9,HAK2,HAK6,HAK12,HAK14,HAK8,HAK13,HAK15,HAK3,HAK7,HAK11	OsHAK17, FCO3, FCO4,OsHAK4,OsHAK5, FCO13, OsFCO13,OsHAK16,OsHAK10,OsHAK1, HAK1,OsHAK9,OsHAK2,OsHAK6, OsSTA42,OsHAK12,OsHAK14,OsHAK8,OsHAK13,OsHAK15,OsHAK3,OsHAK7,OsHAK11
21129	2103437	Barbier,P. and Ishihama,A.	Variation in the nucleotide sequence of a prolamin gene family in wild rice.	Plant Mol. Biol.	15(1)	191-195	1990	CYSR10	Prol-01, CysR10, OsCysR10, crP10, pro10.1, Ospro10.1
21130	3368456	Baroin,A., Perasso,R., Qu,L.H., Brugerolle,G., Bachellerie,J.P. and Adoutte,A.	Partial phylogeny of the unicellular eukaryotes based on rapid sequencing of a portion of 28S ribosomal RNA.	Proc. Natl. Acad. Sci. U.S.A.	85(10)	3474-3478	1988	_	
21131	15282953	Basak,S., Sachdev,A. and Johari,R.P.	A partial sequence of lipoxygenase gene from genomic DNA of aromatic rice (Oryza sativa L.).	Indian J. Exp. Biol.	42(2)	190-196	2004	LOX-L2	OsLOX-L2, LOX1.1, LOX L-2, LOX-2, OsLOX2, LOX2
21132	11094977	Basu,D., Dehesh,K., Schneider-Poetsch,H.J., Harrington,S.E., McCouch,S.R. and Quail,P.H.	Rice PHYC gene: structure, expression, map position and evolution.	Plant Mol. Biol.	44(1)	27-42	2000	PHYB,LHD3,PHYA	phyB, PHYB1, OsPHYB, OsphyB, OsYHB, YHB, OsPHYB/OsYHB,PHYC, OsPHYC, OsPHYCa, OsPHYCb, OsLHD3,phyA, PHYA* (phyA), PHYA*, Phya, PHY18, phy 18, OsPHYA 
21133	8616217	Belouchi,A., Cellier,M., Kwan,T., Saini,H.S., Leroux,G. and Gros,P.	The macrophage-specific membrane protein Nramp controlling natural resistance to infections in mice has homologues expressed in the root system of plants.	Plant Mol. Biol.	29(6)	1181-1196	1995	NRAMP1	OsNramp1, OsNRAMP1, OsNramp6
21134	9154989	Belouchi,A., Kwan,T. and Gros,P.	Cloning and characterization of the OsNramp family from Oryza sativa, a new family of membrane proteins possibly implicated in the transport of metal ions.	Plant Mol. Biol.	33(6)	1085-1092	1997	NRAMP1,NRAMP2,NRAMP3	OsNramp1, OsNRAMP1, OsNramp6,OsNramp2, OsNRAMP2,OsNramp3, OsNRAMP3
21135	15659452	Bi,X., Khush,G.S. and Bennett,J.	The Rice Nucellin Gene Ortholog OsAsp1 Encodes an Active Aspartic Protease Without a Plant-specific Insert and is Strongly Expressed in Early Embryo.	Plant Cell Physiol.	46(1)	87-98	2005	_,_,ASP1	OsAsp2,OsAsp3,OsAsp1
21136	16668981	Binh,L. and Oono,K.	Molecular cloning and characterization of genes related to chilling tolerance in rice	Plant Physiol.	99(3)	1146-1150	1992	_,DER1,_,GSTU50	,OsDER1,OsARFA1a, ARFA1a,OsGSTU50
21138	12677405	Blair,M.W., Garris,A.J., Iyer,A.S., Chapman,B., Kresovich,S. and McCouch,S.R.	High resolution genetic mapping and candidate gene identification at the xa5 locus for bacterial blight resistance in rice ( Oryza sativa L.).	Theor. Appl. Genet.	107(1)	62-73	2003	XA5	xa5, xa-5, Xa5, TFIIAy, OsTFIIAgamma5, TFIIAgamma5, OsTFIIAgamma5/Xa5
21139	9746350	Bouvier-Nave,P., Husselstein,T. and Benveniste,P.	Two families of sterol methyltransferases are involved in the first and the second methylation steps of plant sterol biosynthesis.	Eur. J. Biochem.	256(1)	88-96	1998	_,SMT1-1	Ossmt2-1,Ossmt1-1, OsSMT1-1
21140	8132486	Brandolin,G., A., Trezeguet,V., Lauquin,G.J. and Vignais,P.V.	Chemical, immunological, enzymatic, and genetic approaches to studying the arrangement of the peptide chain of the ADP/ATP carrier in the mitochondrial membrane.	J. Bioenerg. Biomembr.	25(5)	459-472	1993	ANT	ant, ricANC1, ANC1
21141	12746512	Breton,G., Danyluk,J., J.B. and Sarhan,F.	Expression profiling and bioinformatic analyses of a novel stress-regulated multispanning transmembrane protein family from cereals and Arabidopsis.	Plant Physiol.	132(1)	64-74	2003	_,COR413-TM1	Oscor413-pm1,OsCOR413-TM1, Oscor413-tm1
21142	7610170	Breviario,D., Giani,S. and Meoni,C.	Three rice cDNA clones encoding different beta-tubulin isotypes.	Plant Physiol.	108(2)	823-824	1995	TUB5,TUB1,TUB4	OsTUB5, TUBB5, OSTB-50, R2242,OsTUB1, TUBB1, OSTB-34,OsTUB4, TUBB4, OSTB-16, R1623, RTUB-1, Ostub16
21143	7766885	Breviario,D., Morello,L. and Giani,S.	Molecular cloning of two novel rice cDNA sequences encoding putative calcium-dependent protein kinases.	Plant Mol. Biol.	27(5)	953-967	1995	CDPK2,CDPK11	OsCDPK2, OsCPK2, CPK2,OsCDPK11, OsCPK11, CPK11
21144	11090207	Bryan,G.T., Wu,K.S., Farrall,L., Jia,Y., Hershey,H.P., McAdams,S.A., Faulk,K.N., Donaldson,G.K., Tarchini,R. and Valent,B.	tA single amino acid difference distinguishes resistant and susceptible alleles of the rice blast resistance gene Pi-ta.	Plant Cell	12(11)	2033-2045	2000	PITA,PI6,PIK,PIKM	Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30, Trx30,Pi6(t)*, Pi6, Pi-6(t), pi6(t),Pik, RMg8, Pi-k, Pik-2, Pik-1, Pik1, Pik2, Pik-H4, Pikp-1, Pikh-1, Pik1-H4, Pikh-2, Pik2-H4,Pik-m, Pi-m, Pi-km, Pikm, Pi m, Pikm1-TS, Pikm2-TS, Pi-km1, Pi-km2
21145	8075400	Buchholz,W.G., Harris-Haller,L., DeRose,R.T. and Hall,T.C.	Cyclophilins are encoded by a small gene family in rice.	Plant Mol. Biol.	25(5)	837-843	1994	LRT2,CYP19-3	CYC2, cyc2*, cyc2, OsCYP2, Cyp2, OsCYP19-2, CYP19-2, OsCYP-2, OsCyp2-P, OsCyp2, OsCYP19-1, LRT2/OsCYP2, lrt2*, lrt2, Ppcti ,OsCYP19-3, Cyp1, OsCYP-25, OsCYP19-2a, OsCYP19-2b
21146	1536936	Caelles,C., Delseny,M. and Puigdomenech,P.	The hydroxyproline-rich glycoprotein gene from Oryza sativa.	Plant Mol. Biol.	18(3)	617-619	1992	_	HRGP
21147	12897790	Cahoon,E.B., Hall,S.E., Ripp,K.G., Ganzke,T.S., Hitz,W.D. and Coughlan,S.J.	Metabolic redesign of vitamin E biosynthesis in plants for tocotrienol production and increased antioxidant content.	Nat. Biotechnol.	21(9)	1082-1087	2003	_,HGGT	HPT,OsHGGT, OsHST, HST
21148	9390449	Campos,N., Lois,L.M. and Boronat,A.	Nucleotide sequence of a rice cDNA encoding a transketolase-like protein homologous to the Arabidopsis CLA1 gene product (Accession No. AF024512)(PGR97-169)	Plant Physiol.	115(3)	1289	1997	DXS1	CLA1, OsDXS1, dxs1, OsDXS, DXS, OsTKL1, TKL1
21149		Cao,W.H., Dong,Y., Zhang,J.S. and Chen,S.Y.	Characterization of an ethylene receptor homolog gene from rice	Sci. China, C, Life Sciences	46	370-378	2003	ETR3	OsETR3, OsERS4, OS-ETR3, OsETR3a, OsETR3b, PK2, OsPK2, OsETR2;1, ETR2;1
21150	8604305	Cermakian,N., Ikeda,T.M., Cedergren,R. and Gray,M.W.	Sequences homologous to yeast mitochondrial and bacteriophage T3 and T7 RNA polymerases are widespread throughout the eukaryotic lineage.	Nucleic Acids Res.	24(4)	648-654	1996	RPOTP	OsRpo Tp, OsRpoTp, NEP, RpoTp, rpoTP2
21151	10080713	Chang,M., Wang,B., Chen,X. and Wu,R.	Molecular characterization of catalytic-subunit cDNA sequences encoding protein phosphatases 1 and 2A and study of their roles in the gibberellin-dependent Osamy-c expression in rice.	Plant Mol. Biol.	39(1)	105-115	1999	PP1,PP2A	OsPP1c,OsPP2Ac
21153	12956528	Chen,J., Tang,W.H., Hong,M.M. and Wang,Z.Y.	OsBP-73, a rice gene, encodes a novel DNA-binding protein with a SAP-like domain and its genetic interference by double-stranded RNA inhibits rice growth.	Plant Mol. Biol.	52(3)	579-590	2003	BP73	BP-73, OsBP-73, Riaa1, Os-BP-73
21154	9002598	Chen,M. and Bennetzen,J.L.	Sequence composition and organization in the Sh2/A1-homologous region of rice.	Plant Mol. Biol.	32(6)	999-1001	1996	_,AGPL2	a1,OsAGPL2, osagpl2, APL2, OsAPL2, AGPiso, sh2, Sh2, GIF2, GAS1 
21155	9096411	Chen,M., SanMiguel,P., A.C., Woo,S.S., Zhang,H., Wing,R.A. and Bennetzen,J.L.	Microcolinearity in sh2-homologous regions of the maize, rice, and sorghum genomes.	Proc. Natl. Acad. Sci. U.S.A.	94(7)	3431-3435	1997	_,AGPL2	a1,OsAGPL2, osagpl2, APL2, OsAPL2, AGPiso, sh2, Sh2, GIF2, GAS1 
21156	1422207	Chen,M.S., Johnson,B., Wen,L., Muthukrishnan,S., Kramer,K.J., Morgan,T.D. and Reeck,G.R.	Rice cystatin: bacterial expression, purification, cysteine proteinase inhibitory activity, and insect growth suppressing activity of a truncated form of the protein.	Protein Expr. Purif.	3(1)	41-49	1992		
21157	8756508	Chen,P.-W. and Chen,L.-J.	A Rice Embryo-Specific cDNA (Accession No. U57641) Encoding A Late Embryogenesis Abundant Group 3 Protein (PGR96-049)	Plant Physiol.	111(4)	1353	1996		
21158	8742342	Chen,P.-W., Chai,Y.-J., Wang,L.-D., Tzen,J.T.C., Tseng,M.-J. and Chen,L.-J.	Two Embryo-Specific cDNAs (Accession No. U43930 and U43931) Encoding Two Oleosin Isoforms on the Surface of Oil Bodies from Rice (PGR95-143)	Plant Physiol.	110(2)	714	1996	OLE18,OLE16	ole18, OsOLE18,ole16, OsEnS-72, OsOLE16
21159	9046601	Chen,P.-W., Chow,S.-H. and Chen,L.-J.	Nucleotide Sequence of a cDNA (Accession No. U76004) Encoding Rice Bowman-Birk Proteinase Inhibitor (PGR97-015)	Plant Physiol.	113(2)	663	1997	RBBI3-3	RBBI3-3, OsBBPI, BBPI, IBP1.2, OsIBP1.2, OsBBTI5, BBTI5
21161	12223786	Chen,P.W. and Chen,L.J.	Isolation of a cDNA clone (Accession No. U57638) encoding a type-2 metallothionein-like protein from rice embryo (PGR97-109)	Plant Physiol.	114(4)	1568	1997	MT2B	OsMT2b, MT2b, OsMT-I-2c, MT-I-2c, MT2C, MT2BL, OsMT2C, OsMT2BL, MTE, OsMT2b1, OsMT2b2, MT2b1, MT2b2, MTb, met1, OsMTe, OsMT-I-2c, OsB22EL8, MTe, MT-I-2c, B22EL8
21162	10520450	Chen,W.M., Hsieh,H.M. and Huang,P.C.	Type 2 rice metallothionein-like gene has two introns.	DNA Seq.	8(4)	223-228	1998	MT2A	OsMT2a, MT2a, met6, Osmet6, OsMT-2, MT-2, rgMT-2, OsMT-I-2a, OsMT2-1, MT-I-2a, MT2-1
21163	8541504	Chen,X., Wang,B. and Wu,R.	A gibberellin-stimulated ubiquitin-conjugating enzyme gene is involved in alpha-amylase gene expression in rice aleurone.	Plant Mol. Biol.	29(4)	787-795	1995	_,AMY1B	UBC, OsUBC,Amy1B*(RAmy1B), AMYC, RAmy1B, Amy2, Amy1B, Osamy-c, OSamy-c, OSamy--c 
21164	9107028	Chen,X., Chang,M., Wang,B. and Wu,B.	Cloning of a Ca(2+)-ATPase gene and the role of cytosolic Ca2+ in the gibberellin-dependent signaling pathway in aleurone cells.	Plant J.	11(3)	363-371	1997	_,AMY1B	OsCa-atpase,Amy1B*(RAmy1B), AMYC, RAmy1B, Amy2, Amy1B, Osamy-c, OSamy-c, OSamy--c 
21165	15663008	Chen,X., Yu,T., Xiong,J., Zhang,Y., Hua,Y., Li,Y. and Zhu,Y.	Molecular cloning and expression analysis of rice phosphoribulokinase gene that is regulated by environmental stresses.	Mol. Biol. Rep.	31(4)	249-255	2004	_	OsPrk, Prk
21167	12624189	Chen,Z., Young,T.E., Ling,J., Chang,S.C. and Gallie,D.R.	Increasing vitamin C content of plants through enhanced ascorbate recycling.	Proc. Natl. Acad. Sci. U.S.A.	100(6)	3525-3530	2003	DHAR1	OsDHAR1, DHAR, cytDHAR, OscytDHAR, OsDHAR
21168	12913152	Cheong,Y.H., Moon,B.C., Kim,J.K., Kim,C.Y., Kim,M.C., Kim,I.H., Park,C.Y., Kim,J.C., Park,B.O., Koo,S.C., Yoon,H.W., Chung,W.S., Lim,C.O., Lee,S.Y. and Cho,M.J.	BWMK1, a Rice Mitogen-Activated Protein Kinase, Locates in the Nucleus and Mediates Pathogenesis-Related Gene Expression by Activation of a Transcription Factor.	Plant Physiol.	132(4)	1961-1972	2003	BWMK1,EREBP1	OsBWMK1, MPK12, MAPK1, OsMAPK1, OsMPK12, OsMPK17-1, MPK17-1, OsBWMK1L, OsBWMK1M, OsBWMK1S, OsMAPK17-1, MAPK17-1, MAPK12, OsMAPK12,OsEREBP1, OsERF#070, OsERF070, OsERF70, ERF70, AP2/EREBP#084, AP2/EREBP84
21169	16115061	Chern,M., Canlas,P.E., Fitzgerald,H.A. and Ronald,P.C.	Rice NRR, a negative regulator of disease resistance, interacts with Arabidopsis NPR1 and rice NH1.	Plant J.	43(5)	623-635	2005	NH1,NRR,XA21	OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2, DLN5, OsDLN5,  OsBTBA1, BTBA1,OsNRR, OsNRR1, NRR1,Xa21*, Xa21, OsXA21
21170	15986920	Chern,M., Fitzgerald,H.A., Canlas,P.E., Navarre,D.A. and Ronald,P.C.	Overexpression of a rice NPR1 homolog leads to constitutive activation of defense response and hypersensitivity to light.	Mol. Plant Microbe Interact.	18(6)	511-520	2005	NH1,NH2,NRR	OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2, DLN5, OsDLN5,  OsBTBA1, BTBA1,OsNH2, OsNPR2, NPR2, OsNPR2/NH2, DLN21, OsDLN21, PR2, OsNPR1, NPR1,  OsBTBA2, BTBA2, OsNPR3, NPR3,OsNRR, OsNRR1, NRR1
21171	15388961	Chi,W., Yang,J., Wu,N. and Zhang,F.	Four rice genes encoding NADP malic enzyme exhibit distinct expression profiles.	Biosci. Biotechnol. Biochem.	68(9)	1865-1874	2004	NADP-ME2,_,CYTME2,NADP-ME1	OscytME1, OsNADP-ME2-3, NADP-ME2-3,OscytME3, OsEnS-13, NADP-ME, OsNADP-ME,OscytME2, cytME2,NADP-ME, ME6, OschlME, chlME, XcrMal1
21172	9225861	Chittenden,K., Gowda,K., Black,S.D. and Zwieb,C.	Interaction of rice and human SRP19 polypeptides with signal recognition particle RNA.	Plant Mol. Biol.	34(3)	507-515	1997	_	SRP19
21173	9304860	Chittoor,J.M., Leach,J.E. and White,F.F.	Differential induction of a peroxidase gene family during infection of rice by Xanthomonas oryzae pv. oryzae.	Mol. Plant Microbe Interact.	10(7)	861-871	1997	POX22.3,POX5.1,POX3006,POXGX9,POX8.1	POX22.3, OSPER, OsPOX, POX, Pir3, prx111, POX22, OsPOX1, POX1, OsPOX22.3, OsPR9, PR9,POX5.1, prx113, POX5,POX3006, prx114, Osprx114, PO-C1, POC-1, POC1, OsPOC1, Prx14, OsPrx14, POD3006, OsPOD3006,POXgX9, OsPOXgX9, prx112, OsPrx112,POX8.1, prx110, POX8
21174	14675427	Cho,E., Okada,A., Kenmoku,H., Otomo,K., Toyomasu,T., Mitsuhashi,W., Sassa,T., Yajima,A., Yabuta,G., Mori,K., Oikawa,H., Toshima,H., Shibuya,N., Nojiri,H., Omori,T., Nishiyama,M. and Yamane,H.	Molecular cloning and characterization of a cDNA encoding ent-cassa-12,15-diene synthase, a putative diterpenoid phytoalexin biosynthetic enzyme, from suspension-cultured rice cells treated with a chitin elicitor.	Plant J.	37(1)	1-8	2004	KS8,KS7	OsKS8, KS8, KSL8, OsKSL8, DTC2, OsDTC2, OsDTC2/OsKS8, OsTPS32, TPS17, OsTPS17, KSL11, OsKSL11,OsKS7, KS7, KSL7, OsKSL7, DTC1, OsDTC1, OsKS3, OsDTC1/OsKS7, OsTPS6, TPS6, TPS38, OsTPS38
21175	9338967	Cho,H.T. and Kende,H.	Expression of expansin genes is correlated with growth in deepwater rice.	Plant Cell	9(9)	1661-1671	1997	EXPA1,EXPA2,EXPA4,EXPA3	OsEXP1, EXPA1, OsEXPA1, OsaEXPa1.16, RiExA,OsEXP2, OsEXP2(Os-EXP2), Os-EXP2, EXPA2, OsEXPA2, OsaEXPa1.23, RiExB, RiExC, Os-EXPA2,OsEXP4 (Os-EXP4), OsEXPA4, OsEXP4, Os-EXP4, OsaEXPa1.22,OsEXP3 (Os-EXP3), EXPA3, OsEXP3, Os-EXP3, OsaEXPa1.18, RiExD, Os-EXPA3, OsEXPA3
21176	12177491	Choi,D.W., Rodriguez,E.M. and Close,T.J.	Barley Cbf3 gene identification, expression pattern, and map location.	Plant Physiol.	129(4)	1781-1787	2002	DREB1D	OsDREB1D, CBF4, ERF116, OsERF#116, OsERF116, AP2/EREBP#054, AP2/EREBP54, OsCbf1, OsCBF1
21177	2491689	Choi,H.K., Kleinhofs,A. and An,G.H.	Nucleotide sequence of rice nitrate reductase genes.	Plant Mol. Biol.	13(6)	731-733	1989	_	OsNR1, NR1, nia1, OsNIA1, NIA1, OsNIA2, NIA2
21178	8647451	Chow,V.T. and Quek,H.H.	HEP-COP, a novel human gene whose product is highly homologous to the alpha-subunit of the yeast coatomer protein complex.	Gene	169(2)	223-227	1996		
21179	14605221	Christensen,T.M., Vejlupkova,Z., Sharma,Y.K., Arthur,K.M., Spatafora,J.W., Albright,C.A., Meeley,R.B., Duvick,J.P., Quatrano,R.S. and Fowler,J.E.	Conserved Subgroups and Developmental Regulation in the Monocot rop Gene Family.	Plant Physiol.	133(4)	1791-1808	2003	RAC6,RAC7,RAC3,RAC5,RAC2,RAC1,RAC4	OsRacB, RacB, OsRac6,OSRAC7, OsRac7, ROP5, OsRop5,OsRac3,Osrac5, OsRac5, RACD, OsRacD, OsRACD,OsRAC2, OsRac2,OsRAC1, OsRac1, Os Rac1, Rac1, Os-Rac1,OsRAC4, OsRac4, ROP4, OsRop4
21182	7948920	Chung,Y.Y., Kim,S.R., Finkel,D., Yanofsky,M.F. and An,G.	Early flowering and reduced apical dominance result from ectopic expression of a rice MADS box gene.	Plant Mol. Biol.	26(2)	657-665	1994	LHS1	OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO, OsLHS1, OsLG3b, LG3b, qLGY3, LGY3, DLN80, OsDLN80, OLR, OsOLR, GW3p6, OsGW3p6, OsMADS1GW3p6, MADS1GW3p6, qLGY3/OsLG3b/GW3p6
21183	11706039	Chuong,S.D., Mullen,R.T. and Muench,D.G.	Identification of a rice RNA- and microtubule-binding protein as the multifunctional protein, a peroxisomal enzyme involved in the beta -oxidation of fatty acids.	J. Biol. Chem.	277(4)	2419-2429	2002	AIM1	MFP, OsAIM, OsCHD, CHD
21184	2152105	Claes,B., Dekeyser,R., Villarroel,R., M., Bauw,G., M. and Caplan,A.	Characterization of a rice gene showing organ-specific expression in response to salt stress and drought.	Plant Cell	2(1)	19-27	1990	SALT	salT*(sal1), SalT1*, sal1, Sal1, SALT, ML, SalT, OsSalT, OsJRL, JRL, Osl43, OsL43, OsMBL1, MBL1, OsJRL01, JRL01, OsJRL1, JRL1
21185	14660695	Cobbe,N. and Heck,M.M.S.	The Evolution of SMC Proteins: Phylogenetic Analysis and Structural Implications	Mol. Biol. Evol.	21(2)	332-347	2004	_,_,_,_,SMC6,_	SMC1,SMC3,SMC2,SMC5,OsSMC6, SMC6a, OsSMC6a,SMC4, OsSMC4
21186	11444696	Collins,N., Park,R., Spielmeyer,W., Ellis,J. and Pryor,A.J.	Resistance gene analogs in barley and their relationship to rust resistance genes.	Genome	44(3)	375-381	2001	_,_,_,_	PIC22,PIC23,PIC24,PIC27
21187	12684538	Cooper,B., Clarke,J., Budworth,P., Kreps,J., Hutchison,D., Park,S., Guimil,S., Dunn,M., Luginbuhl,P., Ellero,C., Goff,S.A. and Glazebrook,J.	A network of rice genes associated with stress response and seed development.	Proc. Natl. Acad. Sci. U.S.A.	100(8)	4945-4950	2003	RDD4,qOA-3-1 (oa3.1),qOA-8-1 (oa8.1),EF1G,EEF1BG,EF1G2,RDD2	OsDof12, Dof12, OsDof-12, OsCDF1, OsCDF1/OsDOF12, OsDOF12, CDF1, DOF12, OsDof11, Dof11,qOA-3-1 (oa3.1),qOA-8-1 (oa8.1),,eEF1Bgamma, EF-1gamma, OsEF1G1, EF1G1,OsEF1G2,OsDof23, Dof23, OsDof-23, OsDof1, OsCDF3, CDF3, OsDof24, Dof24
21188	14750518	Cooper,B., Hutchison,D., Park,S., Guimil,S., Luginbuhl,P., Ellero,C., Goff,S.A. and Glazebrook,J.	Identification of rice (Oryza sativa) proteins linked to the cyclin-mediated regulation of the cell cycle.	Plant Mol. Biol.	53(3)	273-279	2003	CYCB2;2,E2F1,_,10GBTF3,GF14A,HOS59,CML7,_,_,_,_,_,_,_,_,_,_,_,RLCK377,_,_,TET13,GLYR1,MC5,DP1,CYCB2;1,PUB3,BZIP28,RAP1B,SGT1,SSIVB,PUB2	cycB2;2 (=cycOs2), cycB2;2, cycOs2, CycB2;2, CycOs2, CYCB2-2, CYCOS2, CycB2-Os2, CYCB2, CycB2;os;2, OsCycB2;2, Orysa;CycB2;2, OsCYCOS2, Os;cycB2;2, CYCB2.2, OsCYCB2.2,Orysa;E2F1, OsE2F1, DLN58, OsDLN58, OsE2Fa-1, E2Fa-1,OsPAL02, PAL02, OsPAL5, PAL5, OsPAL2. PAL2, OsPAL1,Osj10gBTF3, 10gBTF3, Os10gBTF3, BTF3a, OsBTF3a,GF14a, OsGF14a, WIN2, 14-3-3a,,OsCML7, OsSTKC,Orysa;DP3,Orysa;DP2, DP TF,,,,HS1,,,SIP6 ,SIP24 ,Osj3g1BTF3, BTF3a, Os03g1BTF3,OsRLCK377, OsRLK902-2, RLK902-2,X1, OsFDML3, FDML3,OsSAHH, SAHH,OsSAP, SAP, OsTET13,OsGLYR1, OsGR1, GR1,OsMC5,Orysa;DP1, OsDP,cycB2;1 (=cycOs1), cycB2;1, cycOs1, CycB2;1, CycOs1, CYCB2-1, CYCOS1, CycB2-Os1, CYCB2, CycB2;os;1, Orysa;CycB2;1, CycB2;os;1, OsCycB2;1,OsPUB3, OsPUB03,  OsPUB3, PUB3,OsbZIP28, OsbZIP1, OsNIF1, OsTGA3, TGA3, OsTGA3/OsbZIP08,MADS14, OsMADS14, FDRMADS6, RMADS211, AGL10,OsSgt1, OsSGT1, Os SGT1,OsSSIVb, SSIV-2, OsSSIV-2, SSIVb, SSIV-2, SSIV2, OsSSIV2,OsPUB2, OsPUB02,  OsPUB2, PUB2
21190	9177257	Cosgrove,D.J., Bedinger,P. and Durachko,D.M.	Group I allergens of grass pollen as cell wall-loosening agents.	Proc. Natl. Acad. Sci. U.S.A.	94(12)	6559-6564	1997	EXPB1B,EXPB1A	OsEXPB1, EXPB1b, OsaEXPb1.3, Ory s I, EXPB1.1,OsEXPB1, EXPB1a, OsaEXPb1.2, Ory s I, EXPB1.1, Ory s 1
21191	10750717	Cunningham,F.X.,Jr. and Gantt,E.	Identification of multi-gene families encoding isopentenyl diphosphate isomerase in plants by heterologous complementation in Escherichia coli.	Plant Cell Physiol.	41(1)	119-123	2000	IPI	OsIPI, ipi, OsIPPI1, IPPI1
21192	14704272	Dai,S., Zhang,Z., Chen,S. and Beachy,R.N.	RF2b, a rice bZIP transcription activator, interacts with RF2a and is involved in symptom development of rice tungro disease	Proc. Natl. Acad. Sci. U.S.A.	101(2)	687-692	2004	RF2B,RF2A	RF2b, OsbZIP30,RF2a, OsbZIP75
21193		Darr,L.B., Godzina,S.M. and Matsuda,S.P.T.	A Rice cDNA (AF169966) Similar to Cycloartenol Synthase. (PGR99-155)	Plant Physiol.	121(2)	686	1999	_	OsOSC2, CAS1
21194	12591613	Day,R.B., Shibuya,N. and Minami,E.	Identification and characterization of two new members of the GRAS gene family in rice responsive to N-acetylchitooligosaccharide elicitor.	Biochim. Biophys. Acta	1625(3)	261-268	2003	CIGR1,CIGR2	OsCIGR1, OsGRAS-34, OsGRAS34, GRAS-34, GRAS34,OsCIGR2, OsGRAS-36, OsGRAS36, GRAS-36, GRAS36
21195	10371193	Deak,M., Casamayor,A., Currie,R.A., Downes,C.P. and Alessi,D.R.	Characterisation of a plant 3-phosphoinositide-dependent protein kinase-1 homologue which contains a pleckstrin homology domain.	FEBS Lett.	451(3)	220-226	1999	PDK1	OsPdk1, Pdk1, OsAGC3, AGC3
21196	2005872	Dehesh,K., Tepperman,J., Christensen,A.H. and Quail,P.H.	phyB is evolutionarily conserved and constitutively expressed in rice seedling shoots.	Mol. Gen. Genet.	225(2)	305-313	1991	PHYB,PHYA	phyB, PHYB1, OsPHYB, OsphyB, OsYHB, YHB, OsPHYB/OsYHB,phyA, PHYA* (phyA), PHYA*, Phya, PHY18, phy 18, OsPHYA 
21197	1396594	Dehesh,K., Hung,H., Tepperman,J.M. and Quail,P.H.	GT-2: a transcription factor with twin autonomous DNA-binding domains of closely related but different target sequence specificity.	EMBO J.	11(11)	4131-4144	1992	_,PHYA	OsGT-2, GT-2, OsMSL22, MSL22,phyA, PHYA* (phyA), PHYA*, Phya, PHY18, phy 18, OsPHYA 
21199	15642712	Dian,W., Jiang,H. and Wu,P.	Evolution and expression analysis of starch synthase III and IV in rice.	J. Exp. Bot.	56(412)	623-632	2005	FLO5,SSIVB,SSIIIB,SSIVA	OsSSIIIa, SSIII-2, OsSSIII-2, OsSS3A, SS3A, SS3a, OsSSSIIIa, SSIIIa, Flo5,OsSSIVb, SSIV-2, OsSSIV-2, SSIVb, SSIV-2, SSIV2, OsSSIV2,OsSSIIIb. SSIII-1, SSIIIa,OsSSIVa, SSIV-1, OsSSIV-1
21201	9852132	Domon,C., Lorkovic,Z.J., Valcarcel,J. and Filipowicz,W.	Multiple forms of the U2 small nuclear ribonucleoprotein auxiliary factor U2AF subunits expressed in higher plants.	J. Biol. Chem.	273(51)	34603-34610	1998	C3H60 ,C3H38  	OsC3H60, U2AF35a, U2AF35A, OsU2AF35a,OsC3H38, U2AF35B, OsU2AF35b
21202	12569397	Dong,A., Zhu,Y., Yu,Y., Cao,K., Sun,C. and Shen,W.H.	Regulation of biosynthesis and intracellular localization of rice and tobacco homologues of nucleosome assembly protein 1.	Planta.	216(4)	561-570	2003	_,_	Orysa;NAP1;2, OsNAP1_L2,Orysa;NAP1;1, OsNAP1_L1
21203	15980199	Dong,A., Liu,Z., Zhu,Y., Yu,F., Li,Z., Cao,K. and Shen,W.H.	Interacting Proteins and Differences in Nuclear Transport Reveal Specific Functions for the NAP1 Family Proteins in Plants.	Plant Physiol.	138(3)	1446-1456	2005	_,_,_	Orysa;NAP1;3, OsNAP1_L3,Orysa;NAP1;1, OsNAP1_L1,Orysa;NAP1;2, OsNAP1_L2
21204		Dong,H., Dong,J., He,Z. and Li,D.	A Rice Transposon Protein-like cDNA Is Induced by Magnaporthe grisea (Accession No. AF121139). (PGR99-042)	Plant Physiol.	119(3)	1149	1999	_	RIM2
21206	12527208	Druka,A., Kudrna,D., Rostoks,N., Brueggeman,R., D. and Kleinhofs,A.	Chalcone isomerase gene from rice (Oryza sativa) and barley (Hordeum vulgare): physical, genetic and mutation mapping.	Gene	302(1-2)	171-178	2003	CHI3	gh1, GH1, OsGH1, OsCHI, Cfi, CHI, OsCHI3
21207	14631652	Du,X.-l., Wang,D., Qian,X.-y., Jiang,L.-z., Chun,W., Li,K.-g., Shen,G.-a., Lin,C.-f. and Yang,J.-s.	cDNA cloning and expression analysis of the rice (Oryza sativa L.) RNase L inhibitor	DNA Seq.	14(4)	295-301	2003	ABCE2	OsABCE2, RLI
21208	11244114	Dubcovsky,J., Ramakrishna,W., SanMiguel,P.J., Busso,C.S., Yan,L., Shiloff,B.A. and Bennetzen,J.L.	Comparative sequence analysis of colinear barley and rice bacterial artificial chromosomes.	Plant Physiol.	125(3)	1342-1353	2001		
21209	12609047	Dubouzet,J.G., Sakuma,Y., Ito,Y., Kasuga,M., Dubouzet,E.G., Miura,S., Seki,M., Shinozaki,K. and Yamaguchi-Shinozaki,K.	OsDREB genes in rice, Oryza sativa L., encode transcription activators that function in drought-, high-salt- and cold-responsive gene expression.	Plant J.	33(4)	751-763	2003	DREB1A,DREB2A,DREB1C,DREB1B,DREB1D	OsDREB1A, Os DREB1A, CBF3, OsCBF3, OsDREB1A/OsCBF3, ERF24, OsERF24, OsERF024, OsERF#024, AP2/EREBP#114, AP2/EREBP114, OsDREBL,OsDREB2A, OsDREB2a, ERF40, OsERF#040, OsERF040, OsERF40, AP2/EREBP#167, AP2/EREBP167,OsDREB1C, CBF1, ERF26, OsERF026, OsERF#026, OsERF26, AP2/EREBP#098, AP2/EREBP98, OsCBF2, CBF2,OsDREB1B, ERF31, OsERF031, OsERF#031, OsERF31, AP2/EREBP#169, AP2/EREBP169, OsDREB1b, OsDREB1C, OsCBF1, CBF1,OsDREB1D, CBF4, ERF116, OsERF#116, OsERF116, AP2/EREBP#054, AP2/EREBP54, OsCbf1, OsCBF1
21210	7632927	E. and Kende,H.	Identification of a gibberellin-induced gene in deepwater rice using differential display of mRNA.	Plant Mol. Biol.	28(3)	589-592	1995	_,_	,
21211	9891412	E. and Kende,H.	Transcript level for a gene encoding a putative type 1a plasma membrane receptor is induced by gibberellin in deepwater rice.	Plant Cell Physiol.	39(11)	1127-1132	1998	_,CYCB2;1	OsDD3,cycB2;1 (=cycOs1), cycB2;1, cycOs1, CycB2;1, CycOs1, CYCB2-1, CYCOS1, CycB2-Os1, CYCB2, CycB2;os;1, Orysa;CycB2;1, CycB2;os;1, OsCycB2;1
21212	8938426	E., Sauter,M., Wilford,R. and Kende,H.	The electronic Plant Gene Register.	Plant Physiol.	112(3)	1397-1400	1996		
21213	9275237	E., Jagoueix,S. and Kende,H.	Expression of an ortholog of replication protein A1 (RPA1) is induced by gibberellin in deepwater rice.	Proc. Natl. Acad. Sci. U.S.A.	94(18)	9979-9983	1997	RPA1	OsRPA1, OsRPA70b, RPA70b
21214	11876823	Elias,M., Potocky,M., Cvrckova,F. and V.	Molecular diversity of phospholipase D in angiosperms.	BMC Genomics.	3(1)	2	2002	PLDalpha4,PLDalpha7,PLDzeta2,PLDzeta1,PLDkappa,PLDbeta1,PLDalpha5,PLDalpha6,PLDalpha2,PLDdelta2,PLDALPHA3,PLDdelta3,PLDalpha8,PLDbeta2,PLDdelta1,PLDalpha1	OsPLDalpha4, RPLD3, OsPLDeta2, OsC2DP50, C2DP50,OsPLDalpha7, OsPLDtheta,OsPLDzeta2, OsPLDrho2,OsPLDzeta1, OsPLDrho1 ,OsPLDkappa, OsC2DP12, C2DP12,OsPLDbeta1, OsC2DP79, C2DP79,OsPLDalpha5, RPLD4, OsPLDeta3, OsC2DP51, C2DP51,OsPLDalpha6, OsPLDeta1, OsPLDmu, OsC2DP31, C2DP31,OsPLDalpha2, OsC2DP43, C2DP43,OsPLDdelta2, RPLD5, OsPLDnu1, OsC2DP33, C2DP33,OsPLDalpha3, RPLD2, PLDalpha3, OsPLDeta1, PLD2, OsC2DP52, C2DP52,OsPLDdelta3, OsPLDnu2, OsC2DP61, C2DP61,OsPLDalpha8, OsPLDlambda, OsC2DP74, C2DP74,OsPLDbeta2, OsSTA86, OsC2DP27, C2DP27,OsPLDdelta1, OsPLDdelta, OsSTA233, OsC2DP77, C2DP77,RPLD1, PLD1, OsPLDalpha1, OsC2DP2, C2DP2
21215	7764623	F., Dekeyser,R., Garcia,A.B., Claes,B., Gielen,J., M. and Caplan,A.B.	Heat-inducible rice hsp82 and hsp70 are not always co-regulated.	Planta.	193(1)	57-66	1994	HSP82D,HSP82C,_,HSP82B,HSP82A	OsHSP82D, hsp82D,OsHSP82C, hsp82C,HSP70, hsp70,OsHSP82, hsp82B, HSP82,OsHSP82A, hsp82A, HSP90, OsHSP90, OsHSP81, HSP81
21216	7972513	F., Dekeyser,R., Gielen,J., M. and Caplan,A.	Characterization of a S-adenosylmethionine synthetase gene in rice.	Plant Physiol.	105(4)	1463-1464	1994	SAMS1	OsSAMS1, OS-SAMS1, OsSAMS, SAM, SAMS
21218	1840687	Fang,R.X., Pang,Z., Gao,D.M., Mang,K.Q. and Chua,N.H.	cDNA sequence of a virus-inducible, glycine-rich protein gene from rice.	Plant Mol. Biol.	17(6)	1255-1257	1991	_	GRP, Osgrp-2, OsGRP-2, GRCWP, OsGRP2, GRP2
21219	9687064	Fang,Z., Kamasani,U. and Berkowitz,G.A.	Molecular cloning and expression characterization of a rice K+ channel beta subunit.	Plant Mol. Biol.	37(4)	597-606	1998	KOB1	OsKOB1, OsAKR3, AKR3
21220	9843485	Favery,B., Lecomte,P., Gil,N., Bechtold,N., Bouchez,D., Dalmasso,A. and Abad,P.	RPE, a plant gene involved in early developmental steps of nematode feeding cells.	EMBO J.	17(23)	6799-6811	1998	_	RPE
21221	2308863	Feng,G.H., Wen,L., Huang,J.K., Shorrosh,B.S., Muthukrishnan,S. and Reeck,G.R.	Nucleotide sequence of a cloned rice genomic DNA fragment that encodes a 10 kDa prolamin polypeptide.	Nucleic Acids Res.	18(3)	683	1990	CYSR10	Prol-01, CysR10, OsCysR10, crP10, pro10.1, Ospro10.1
21222	12447439	Feng,Q. et al.  (Feng,Q., Zhang,Y., Hao,P., Wang,S., Fu,G., Huang,Y., Li,Y., Zhu,J., Liu,Y., Hu,X., Jia,P., Zhang,Y., Zhao,Q., Ying,K., Yu,S., Tang,Y., Weng,Q., Zhang,L., Lu,Y., Mu,J., Lu,Y., Zhang,L.S., Yu,Z., Fan,D., Liu,X., Lu,T., Li,C., Wu,Y., Sun,T., Lei,H., Li,T., Hu,H., Guan,J., Wu,M., Zhang,R., Zhou,B., Chen,Z., Chen,L., Jin,Z., Wang,R., Yin,H., Cai,Z., Ren,S., Lv,G., Gu,W., Zhu,G., Tu,Y., Jia,J., Zhang,Y., Chen,J., Kang,H., Chen,X., Shao,C., Sun,Y., Hu,Q., Zhang,X., Zhang,W., Wang,L., Ding,C., Sheng,H., Gu,J., Chen,S., Ni,L., Zhu,F., Chen,W., Lan,L., Lai,Y., Cheng,Z., Gu,M., Jiang,J., Li,J., Hong,G., Xue,Y. and Han,B.)	Sequence and analysis of rice chromosome 4.	Nature	420(6913)	316-320	2002		
21223	11756687	Feschotte,C. and Wessler,S.R.	Mariner-like transposases are widespread and diverse in flowering plants.	Proc. Natl. Acad. Sci. U.S.A.	99(1)	280-285	2002	MAR2B,MAR3,MAR5,MAR1,MAR4	Osmar2b,Osmar3,Osmar5,Osmar1,Osmar4
21224	10393983	Feuillet,C. and Keller,B.	High gene density is conserved at syntenic loci of small and large grass genomes.	Proc. Natl. Acad. Sci. U.S.A.	96(14)	8265-8270	1999	_,8TAK1,_,8TAK2	Os8Tak3,Os8Tak1, OsRLK21, RLK21,Os8Lrk, Os8Lrk.p,Os8Tak2, YK21, OsRLCK12, RLCK12, RLK20, OsRLK20
21225	8041700	Fitch,W.M. and Ayala,F.J.	The superoxide dismutase molecular clock revisited.	Proc. Natl. Acad. Sci. U.S.A.	91(15)	6802-6807	1994	SODCC2	Cu/Zn-SOD, Cu/Zn- SOD, OsCu-ZnSOD2, Cu-ZnSOD2, OsSODB, OsSOD3, SodCc2, Os SodCc2, sodB, OsSodB, RSODB, OssodCc1, OsCSD1.1, CSD1.1, OsCDS1, OsSOD3-CU/Zn, SOD3-CU/Zn, CuZnSOD2, Cu/ZnSOD2, OsCu/ZnSOD2, OsCSD1, CSD1, CuZnSOD1, OsCuZnSOD2, OsCSD4, CSD4, OsCSD3, CSD3, Cu/Zn-SOD3
21226	10469647	Fowler,S., Lee,K., Onouchi,H., Samach,A., Richardson,K., Morris,B., Coupland,G. and Putterill,J.	GIGANTEA: a circadian clock-controlled gene that regulates photoperiodic flowering in Arabidopsis and encodes a protein with several possible membrane-spanning domains.	EMBO J.	18(17)	4679-4688	1999	GI	OsGI, Gi, Os-GI
21227	9747848	Frances,H., Bligh,J., Larkin,P.D., Roach,P.S., Jones,C.A., Fu,H. and Park,W.D.	Use of alternate splice sites in granule-bound starch synthase mRNA from low-amylose rice varieties.	Plant Mol. Biol.	38(3)	407-415	1998	WX1	wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx
21228	11139406	Franceschetti,M., Hanfrey,C., Scaramagli,S., Torrigiani,P., Bagni,N., Burtin,D. and Michael,A.J.	Characterization of monocot and dicot plant S-adenosyl-l-methionine decarboxylase gene families including identification in the mRNA of a highly conserved pair of upstream overlapping open reading frames.	Biochem. J.	353( Pt 2)	403-409	2001	SAMDC2,SAMDC	SamDC2, AdoMetDC2, OsSAMDC2,SamDC, AdoMetDC, AdoMetDC1, OsSAMDC1
21230	9748665	Francisco,P.B.,Jr., Zhang,Y., Park,S.Y., Ogata,N., Yamanouchi,H. and Nakamura,Y.	Genomic DNA sequence of a rice gene coding for a pullulanase-type of starch debranching enzyme.	Biochim. Biophys. Acta	1387(1-2)	469-477	1998	PUL	OsPUL, SDBE, OsPUL3, RE
21231	8550584	Frandsen,G., Muller-Uri,F., Nielsen,M., Mundy,J. and Skriver,K.	Novel plant Ca(2+)-binding protein expressed in response to abscisic acid and osmotic stress.	J. Biol. Chem.	271(1)	343-348	1996	EFA27	OsEFA27, OsClo5, Clo5, RD20, OsRD20
21232	11114160	Frye,C.A., Tang,D. and Innes,R.W.	Negative regulation of defense responses in plants by a conserved MAPKK kinase.	Proc. Natl. Acad. Sci. U.S.A.	98(1)	373-378	2001	ACDR1	OsEDR1, OsACDR1, EDR1, OsMAPKKK1, MAPKKK1, SPL3, OsSPL3
21233	15803319	Fujino,K., Sekiguchi,H. and Kiguchi,T.	Identification of an active transposon in intact rice plants.	Molecular Genetics & Genomics (Molecular General Genetics up to 2001)	273(2)	150-157	2005	DART,NDART1-7,NDART1-11,NDART1-12,NDART1-A,_,NDART1-3(6),NDART1-3(8),NDART1-1,NDART1-9,NDART1-2,NDART1-4(3-2),NDART1-4(3-1),DART0501,DART0401,DART1201,DART1001,DART0402,DART0101	Dart,nDART1-7,nDART1-11,nDART1-12,nDart1-A,MgPIX MT,nDART1-3(6),nDART1-3(8),nDART1-1,nDART1-9,nDART1-2,nDart1-4(3-2),nDart1-4(3-1),Dart0501,Dart0401,Dart1201,Dart1001,Dart0402,Dart0101
21234	10377457	Fujisawa,Y., Kato,T., Ohki,S., Ishikawa,A., Kitano,H., Sasaki,T., Asahi,T. and Iwasaki,Y.	Suppression of the heterotrimeric G protein causes abnormal morphology, including dwarfism, in rice.	Proc. Natl. Acad. Sci. U.S.A.	96(13)	7575-7580	1999	D1	d1, GPA1, GA1, OsGA1, RGA1, dwf1, XA7, RGA, D1/RGA1, D89, TGW5, OsTGW5, SRG5, OsSRG5
21235	10333591	Fujita,N., Kubo,A., Francisco,P.B.,Jr., Nakakita,M., Harada,K., Minaka,N. and Nakamura,Y.	Purification, characterization, and cDNA structure of isoamylase from developing endosperm of rice.	Planta.	208(2)	283-293	1999	PHS8	ISA1, OsISA1, ISA, OsISA, PHS8/ISA1, OsPHS8, ISA I, OsISA I, ISAI, OsISAI
21236	10395929	Fukuda,A., Nakamura,A. and Tanaka,Y.	Molecular cloning and expression of the Na+/H+ exchanger gene in Oryza sativa.	Biochim. Biophys. Acta	1446(1-2)	149-155	1999	NHX1	OsNHX1, OcNHX1, OgNHX1, OrNHX1, OpNHX1, ObNHX1
21239	8490131	Fukuhara,T., Moriyama,H., Pak,J.Y., Hyakutake,H. and Nitta,T.	Enigmatic double-stranded RNA in Japonica rice.	Plant Mol. Biol.	21(6)	1121-1130	1993		
21240	7629126	Fukuhara,T., Moriyama,H. and Nitta,T.	The unusual structure of a novel RNA replicon in rice.	J. Biol. Chem.	270(30)	18147-18149	1995		
21241	7909914	Fukuoka,H., Kageyama,Y., Yamamoto,K. and Takeda,G.	Rapid conversion of rDNA intergenic spacer of diploid mutants of rice derived from gamma-ray irradiated tetraploids.	Mol. Gen. Genet.	243(2)	166-172	1994		
21243	12602891	Furukawa,T., Kimura,S., Ishibashi,T., Mori,Y., Hashimoto,J. and Sakaguchi,K.	OsSEND-1: a new RAD2 nuclease family member in higher plants.	Plant Mol. Biol.	51(1)	59-70	2003	SEND1	OsSEND-1, OsSEND1
21244	8204833	Fushimi,T., Umeda,M., Shimazaki,T., Kato,A., Toriyama,K. and Uchimiya,H.	Nucleotide sequence of a rice cDNA similar to a maize NADP-dependent malic enzyme.	Plant Mol. Biol.	24(6)	965-967	1994	NADP-ME1	NADP-ME, ME6, OschlME, chlME, XcrMal1
21245	15247400	Gallagher,C.E., Matthews,P.D., Li,F. and Wurtzel,E.T.	Gene Duplication in the Carotenoid Biosynthetic Pathway Preceded Evolution of the Grasses.	Plant Physiol.	135(3)	1776-1783	2004	PSY1,PSY2	OsPSY1 ,OsPSY2
21247	12228545	Garcia,A., Claes,B., Villarroel,R., M. and Caplan,A.	Genomic sequence corresponding to the salT (GenBank Z25811) gene from rice	Plant Physiol.	108(3)	1342	1995	SALT	salT*(sal1), SalT1*, sal1, Sal1, SALT, ML, SalT, OsSalT, OsJRL, JRL, Osl43, OsL43, OsMBL1, MBL1, OsJRL01, JRL01, OsJRL1, JRL1
21248	9654133	Garcia-Garrido,J.M., Menossi,M., Puigdomenech,P., Martinez-Izquierdo,J.A. and Delseny,M.	Characterization of a gene encoding an abscisic acid-inducible type-2 lipid transfer protein from rice.	FEBS Lett.	428(3)	193-199	1998	LTP2,LTP1	nsLTP2, OsnsLTP2, OsLTP2.3, Ltp2, OsLTP2, RLTP2, OsLtpII.3,Ltp1, RLTP1
21249	12795699	Garciadeblas,B., Senn,M.E., Banuelos,M.A. and Rodriguez-Navarro,A.	Sodium transport and HKT transporters: the rice model.	Plant J.	34(6)	788-801	2003	HKT9,HKT7,SKC1,HKT5,HKT4,HKT2,HKT6,HKT1,HKT3	OsHKT9, OsHKT2;4, HKT2;4,OsHKT7, OsHKT1;4, HKT1;4,OsHKT8, HKT8, Os-HKT1;5, OsHKT1;5, HKT1;5, SKC1, qSKC-1(t), OsSKC1,OsHKT5, OsHKT1;2,OsHKT4, OsHKT1;1, HKT1;1, OsHKT2, RNC4, OsHKT1;1-FL, OsHKT1;1-V1, OsHKT1;1-V2, OsHKT1;1-V3, OsHKT1;1-V4, OsHKT1;1-V5, OsHKT1;1-V6, OsHKT1;1-V7, OsHKT1;1-V8,OsHKT2, OsHKT2;2,OsHKT6, OsHKT1;3, HKT1;3, OsHKT1;3_FL, OsHKT1;3_V1, OsHKT1;3_V2, OsHKT1;3_V3, OsHKT1;3_V4, OsHKT1;3_V5,OsHKT1, OsHKT2;1, HKT2;1, Ni (Nipponbare)-OsHKT1, Po (Pokkali)-HKT1, OsHKT1;1, HKT1;1,OsHKT3, OsHKT2;3, HKT2;3
21250	15247372	Ge,L., Chen,H., Jiang,J.F., Zhao,Y., Xu,M.L., Xu,Y.Y., Tan,K.H., Xu,Z.H. and Chong,K.	Overexpression of OsRAA1 Causes Pleiotropic Phenotypes in Transgenic Rice Plants, including Altered Leaf, Flower, and Root Development and Root Response to Gravity.	Plant Physiol.	135(3)	1502-1513	2004	RAA1	OsRAA1, OsFPFL1, FPFL1
21251	10588717	Ge,S., Sang,T., Lu,B.R. and Hong,D.Y.	Phylogeny of rice genomes with emphasis on origins of allotetraploid species.	Proc. Natl. Acad. Sci. U.S.A.	96(25)	14400-14405	1999	_,ADH1,ADH2	matK, ORF542 ,Adh1, Adh1/2, adh1/adh2, OsADH1,Adh2*, Adh2, OsADH2
21252	10417331	Genschel,U., Powell,C.A., Abell,C. and Smith,A.G.	The final step of pantothenate biosynthesis in higher plants: cloning and characterization of pantothenate synthetase from Lotus japonicus and Oryza sativum (rice).	Biochem. J.	341(PT 3)	669-678	1999	_	panC, PS
21253	9750346	Glover,J., Grelon,M., Craig,S., Chaudhury,A. and Dennis,E.	Cloning and characterization of MS5 from Arabidopsis: a gene critical in male meiosis.	Plant J.	15(3)	345-356	1998	SDI2	OsSDI2
21255	12182709	Golldack,D., Su,H., Quigley,F., Kamasani,U.R., Munoz-Garay,C., Balderas,E., Popova,O.V., Bennett,J., Bohnert,H.J. and Pantoja,O.	Characterization of a HKT-type transporter in rice as a general alkali cation transporter.	Plant J.	31(4)	529-542	2002	HKT1	OsHKT1, OsHKT2;1, HKT2;1, Ni (Nipponbare)-OsHKT1, Po (Pokkali)-HKT1, OsHKT1;1, HKT1;1
21256	16021404	Gothandam,K.M., Kim,E.S., Cho,H. and Chung,Y.Y.	OsPPR1, a pentatricopeptide repeat protein of rice is essential for the chloroplast biogenesis.	Plant Mol. Biol.	58(3)	421-433	2005	PPR1	OsPPR1, rPPR1
21257	9748637	Goto,S., Akagawa,T., Kojima,S., Hayakawa,T. and Yamaya,T.	Organization and structure of NADH-dependent glutamate synthase gene from rice plants.	Biochim. Biophys. Acta	1387(1-2)	298-308	1998	GLT1	OsGLT1, OsNADH-GOGAT1, NADH-GOGAT1, OsNADH-GOGAT, GOGAT, NADH-GOGAT, OsGOGAT1, GOGAT1, OsGLU1
21258	9065695	Greco,R., Stagi,L., Colombo,L., Angenent,G.C., Sari-Gorla,M. and Pe,M.E.	MADS box genes expressed in developing inflorescences of rice and sorghum.	Mol. Gen. Genet.	253(5)	615-623	1997	MADS7,MADS24	OsMADS7, OsMADS45, FDRMADS1, RMADS216, AGL6, M79, MADS45, Os MADS7, Os MADS45, OsMADS7/45,OsMADS24, MADS8, OsMADS8, OsMADS8/24 
21259		Gross,J., Stein,J.R., Fett-Neto,A.G. and Fett,J.P.	Iron homeostasis related genes in rice	Genet. Mol. Biol.	26(4)	477-497	2003	YSL2,YSL1,YSL15,YSL14,YSL6,YSL5,YSL12,YSL4,YSL17,YSL3,_,_,YSL18,YSL13,YSL16,YSL9,FER1,YSL7,FER2	OsYSL2, Os-YSL2, OsYs6 ,OsYSL1, OsYs1,OsYSL15, OsYs7,OsYSL14, OsYs5,OsYSL6, OsYs8 ,OsYSL5, OsYs9 ,OsYSL12, OsYs11 ,OsYSL4, OsYs17 ,OsYSL17, OsYs18 ,OsYSL3, OsYs16 ,OsYs15,OsYs10,OsYSL18, OsYs2 ,OsYSL13, OsYs12 ,OsYSL16, Os-YSL16, OsYs14 ,OsYSL9, OsYs13 ,OsFER1, OsFer1 ,OsYSL7, OsYs4,OsFER2, OsFer2
21260	15973413	Gu,K., Yang,B., Tian,D., Wu,L., Wang,D., Sreekala,C., Yang,F., Chu,Z., Wang,G.-L., White,F.F. and Yin,Z.	R gene expression induced by a type-III effector triggers disease resistance in rice.	Nature	435(7045)	1122-1125	2005	XA27	Xa27(t), Xa27(t)*, Xa27
21262	9890811	Guan,J.C., Chang,F.C., Tseng,T.S., Chang,P.F.L., Yeh,K.W., Chen,Y.M. and Lin,C.Y.	Structure of Rice Genes Encoding Three Class-I Low-Molecular-Mass Heat-Shock Proteins (Accession Nos. U83669, U83670 and U83671). (PGR98-178)	Plant Physiol.	118(3)	1101	1998	HSP18.0,HSP17.7,HSP17.3	OsHSP18.0-CI, HSP18.0-CI, OsHsp18.0, OsHSP18.0, Oshsp18.0, OsSHSP1, SHSP1, OsMSR3, MSR3, OsHSP20, HSP20, OsHSP18.6, HSP18.6,OsHsp17.7, OsHSP17.4-CI, OsHSP17.7, Oshsp17.7,OsHsp17.3, OsHSP17.3, Oshsp17.3 
21263		Gupta,P., Raghuvanshi,S. and Tyagi,A.K.	PCR-Amplification and cloning of the coding region of a cDNA for a reversibly glycosylated polypeptide from rice with possible involvement in the biosynthesis of glucans	J. Plant Biochem. Biotechnol.	9	99-102	2000	UAM1	OsUAM1, RGP-1, Osgls1
21264	12596875	Ha,S.B., Lee,B.C., Lee,D.E., Kuk,Y.I., Lee,A.Y., Han,O. and Back,K.	Molecular characterization of the gene encoding rice allene oxide synthase and its expression.	Biosci. Biotechnol. Biochem.	66(12)	2719-2722	2002	AOS2	OsAOS2, CYP74A2, OsAOS, OsAOS1
21265	14988482	Haga,K. and Iino,M.	Phytochrome-mediated transcriptional up-regulation of ALLENE OXIDE SYNTHASE in rice seedlings.	Plant Cell Physiol.	45(2)	119-128	2004	AOS4,AOS3,AOS1	OsAOS4, CYP74A4, OsHPL1, HPL1,OsAOS3, HPL2, OsHPL2, OsAOS3/OsHPL2,OsAOS, OsAOS1, CYP74A1, OsAOS2, AOS2
21266	15598797	Haga,K., Takano,M., Neumann,R. and Iino,M.	The Rice COLEOPTILE PHOTOTROPISM1 Gene Encoding an Ortholog of Arabidopsis NPH3 Is Required for Phototropism of Coleoptiles and Lateral Translocation of Auxin.	Plant Cell	17(1)	103-115	2005	CPT1	cpt1,  OsBTBN2, BTBN2
21267	10586516	Hamanaka,S., Ohtsu,K., Kadowaki,K., Nakazono,M. and Hirai,A.	Identification of cDNA encoding cytochrome c oxidase subunit 5c (COX5c) from rice: comparison of its expression with nuclear-encoded and mitochondrial-encoded COX genes.	Genes Genet. Syst.	74(3)	71-75	1999	_,_,_	COX5c ,coxVb, COX5b,coxI, COX1, cox1-1, cox1
21269	10659772	Han,F., Kilian,A., Chen,J.P., Kudrna,D., Steffenson,B., Yamamoto,K., Matsumoto,T., Sasaki,T. and Kleinhofs,A.	Sequence analysis of a rice BAC covering the syntenous barley Rpg1 region	Genome	42(6)	1071-1076	1999		
21271	9112770	Hansen,J.D., Pyee,J., Xia,Y., Wen,T.J., Robertson,D.S., Kolattukudy,P.E., Nikolau,B.J. and Schnable,P.S.	The glossy1 locus of maize and an epidermis-specific cDNA from Kleinia odora define a class of receptor-like proteins required for the normal accumulation of cuticular waxes.	Plant Physiol.	113(4)	1091-1100	1997	_	OsGL1-3
21272	3428916	Hariharan,N. and Padayatty,J.D.	Ribosomal RNA gene repeat units in rice embryos.	Indian J. Biochem. Biophys.	24(3)	157-164	1987	5.8S rRNA,17S rRNA,25S rRNA,25S rRNA	5.8S rRNA,17S rRNA,25S rRNA,25S rRNA
21273	10571893	Hartwell,J., Gill,A., Nimmo,G.A., Wilkins,M.B., Jenkins,G.I. and Nimmo,H.G.	Phosphoenolpyruvate carboxylase kinase is a novel protein kinase regulated at the level of expression.	Plant J.	20(3)	333-342	1999		
21274	8499614	Hashimoto,H., Nishi,R., Umeda,M., Uchimiya,H. and Kato,A.	Isolation and characterization of a rice cDNA clone encoding ATP/ADP translocator.	Plant Mol. Biol.	22(1)	163-164	1993	ANT	ant, ricANC1, ANC1
21275	1376401	Hashimoto,J., Hirabayashi,T., Hayano,Y., Hata,S., Ohashi,Y., Suzuka,I., Utsugi,T., Toh-e,A. and Kikuchi,Y.	Isolation and characterization of cDNA clones encoding cdc2 homologues from Oryza sativa: a functional homologue and cognate variants.	Mol. Gen. Genet.	233(1-2)	10-16	1992	CDC2-2,CDC2-1	cdc2Os-2, CDC2Os-2, CDKA-2, CDKA;2, Orysa;CDKA;2, Rcdc2-2, OsCDKA;2, OsCDKA2, CDKA2, CDKA;1, OsCDKA;1, CDC20S-2, OsCDC20S-2,cdc2Os-1, CDC2Os-1, CDKA-1, CDKA;1, Orysa;CDKA;1, OsCDKA;1, cdc2Os1, Rcdc2-1, OsCDKA1, CDKA1, CDC20S-1, OsCDC20S-1 
21277	15111725	Hashimoto,K., Saito,M., Matsuoka,H., Iida,K. and Iida,H.	Functional Analysis of a Rice Putative Voltage-Dependent Ca(2+) Channel, OsTPC1, Expressed in Yeast Cells Lacking its Homologous Gene CCH1.	Plant Cell Physiol.	45(4)	496-500	2004	TPC1	OsTPC1, Tpc1, OsCC1, OsCL1 pore
21278	15169937	Hashimoto,M., Kisseleva,L., Sawa,S., Furukawa,T., Komatsu,S. and Koshiba,T.	A Novel Rice PR10 Protein, RSOsPR10, Specifically Induced in Roots by Biotic and Abiotic Stresses, Possibly via the Jasmonic Acid Signaling Pathway.	Plant Cell Physiol.	45(5)	550-559	2004	JIOSPR10,RSOSPR10	JIOsPR10, OsPR10, PR10, OsJiPR10, JiPR10, OsPR10c, PR10c,RSOsPR10, RsOsPR10a, OsPR10a, OsPR10alpha, OsPR10, PR10, OsBETV1, BETV1
21279	1995335	Hata,S.	cDNA cloning of a novel cdc2+/CDC28-related protein kinase from rice.	FEBS Lett.	279(1)	149-152	1991	CDKD;1	CDKD;1, Orysa;CDKD;1, R2, OsR2, CAK R2, CDKD1;3 
21280	8193305	Hattori,T., Terada,T. and Hamasuna,S.T.	Sequence and functional analyses of the rice gene homologous to the maize Vp1.	Plant Mol. Biol.	24(5)	805-810	1994	VP1	Vp1* (OSVP1), OsVP1, OsVp1, Vp1, ABI3, OsABI3, OsLFL4, OsVp-1, OSVP1
21281	7599651	Hattori,T., Terada,T. and Hamasuna,S.	Regulation of the Osem gene by abscisic acid and the transcriptional activator VP1: analysis of cis-acting promoter elements required for regulation by abscisic acid and VP1.	Plant J.	7(6)	913-925	1995	VP1,EM	Vp1* (OSVP1), OsVP1, OsVp1, Vp1, ABI3, OsABI3, OsLFL4, OsVp-1, OSVP1,Em*, EMP1, Emp1, EM, Em, OsEm, Osem, OsLEA21, OsEm1, Em1 
21282	11842136	Hazen,S.P., Scott-Craig,J.S. and Walton,J.D.	Cellulose synthase-like genes of rice.	Plant Physiol.	128(2)	336-340	2002	ND1,CSLA8,CSLA10,CSLC4,CSLC5,CSLC6,CSLC8,CSLE3,CSLE4,CSLE5,CSLF5,CSLA2,CSLA4,CSLA5,CSLC3,CSLD2,CSLH2,CSLA6,CSLD3,CSLE1,CSLA7,CSLC9,CSLA1,CSLC1,CSLC7,CSLA9,CSLF1,CSLF2,CSLF4,CSLF3,CSLE2,CSLH1,CSLD1,CSLA3,CSLF7,CSLF6,CSLC2	CSLD4, OsCSLD4, OsCD1, CD1, DNL3, OsDNL3, NRL1, OsNRL1, SPO1, OsSPO1, SPO1/OsCSLD4,OsCslA8,OsCslA10,OsCslC4,OsCslC5,OsCslC6,OsCslC8,OsCslE3,OsCslE4,OsCslE5,OsCslF5,OsCslA2, OsCSLA2,OsCslA4, OsCSLA4 ,OsCslA5, OsCSLA5 ,OsCslC3, OsCSLC3 ,OsCslD2, OsCSLD2 ,OsCslH2, OsCSLH2 ,OsCslA6, OsCSLA6,OsCSLD3,OsCslE1, OsCSLE1 ,OsCslA7, OsCSLA7, OsCesA7, CesA7,OsCslC9, OsCSLC9,OsCslA1, OsCSLA1 ,OsCslC1, OsCSLC1,OsCslC7, OsCSLC7 ,OsCslA9, OsCSLA9, OsCesA9, CesA9,OsCslF1, OsCSLF1 ,OsCslF2, OsCSLF2,OsCslF4, OsCSLF4 ,OsCslF3, OsCSLF3 ,OsCslE2, OsCSLE2 ,OsCslH1, OsCSLH1 ,csld1, OsCSLD1, OsCslD1,OsCslA3, OsCSLA3 ,OsCslF7, OsCSLF7 ,OsCslF6, OsCSLF6, OsCLD3, CLD3,OsCslC2, OsCSLC2 
21283	10624015	He,C., Fong,S.H., Yang,D. and Wang,G.L.	BWMK1, a novel MAP kinase induced by fungal infection and mechanical wounding in rice.	Mol. Plant Microbe Interact.	12(12)	1064-1073	1999	BWMK1	OsBWMK1, MPK12, MAPK1, OsMAPK1, OsMPK12, OsMPK17-1, MPK17-1, OsBWMK1L, OsBWMK1M, OsBWMK1S, OsMAPK17-1, MAPK17-1, MAPK12, OsMAPK12
21284	12100484	Heller-Uszynska,K., Schnippenkoetter,W. and Kilian,A.	Cloning and characterization of rice (Oryza sativa L) telomerase reverse transcriptase, which reveals complex splicing patterns.	Plant J.	31(1)	75-86	2002	TERT	OsTERT
21285	2374721	Hidaka,S., Kadowaki,K., Tsutsumi,K. and Ishikawa,K.	Nucleotide sequence of the rice cytoplasmic aldolase cDNA.	Nucleic Acids Res.	18(13)	3991	1990	ALDC2	GSC 233, AldC-2, OsAldC-2, OsFBA, FBA
21286	15960616	Hidema,J., Teranishi,M., Iwamatsu,Y., Hirouchi,T., Ueda,T., Sato,T., Burr,B., Sutherland,B.M., Yamamoto,K. and Kumagai,T.	Spontaneously occurring mutations in the cyclobutane pyrimidine dimer photolyase gene cause different sensitivities to ultraviolet-B in rice.	Plant J.	43(1)	57-67	2005	CPD	CPD
21288	8605302	Higo,K. and Higo,H.	Cloning and characterization of the rice CatA catalase gene, a homologue of the maize Cat3 gene.	Plant Mol. Biol.	30(3)	505-521	1996	CATA	CATA1, Cat A1*, OSCAT-A, Cat2, CatA1, CAT-A, OsCatA, OsCAT, CAT, catA, OSCATA, OsCATc, OsCATA, OsCAT1A, CAT1, OsCAT1, OsCATC, OsCAT2
21289	11169192	Higuchi,K., Watanabe,S., Takahashi,M., Kawasaki,S., Nakanishi,H., Nishizawa,N.K. and Mori,S.	Nicotianamine synthase gene expression differs in barley and rice under Fe-deficient conditions.	Plant J.	25(2)	159-167	2001	NAS2,NAS1	OsNAS2, OsNAS1,OsNAS1
21290	3666457	Higuchi,W. and Fukazawa,C.	A rice glutelin and a soybean glycinin have evolved from a common ancestral gene.	Gene	55(2-3)	245-253	1987	GLUA1	Glua1*, Glua1, GLUA-1, GluA-1, GluA1, Glu19, OsEnS-16
21291	8066137	Hihara,Y., Umeda,M., Hara,C., Toriyama,K. and Uchimiya,H.	Nucleotide sequence of a rice acidic ribosomal phosphoprotein P0 cDNA.	Plant Physiol.	105(2)	753-754	1994	P0A	YK704, Os60sP0, OsP0A
21292	8704128	Hihara,Y., Hara,C. and Uchimiya,H.	Isolation and characterization of two cDNA clones for mRNAs that are abundantly expressed in immature anthers of rice (Oryza sativa L.).	Plant Mol. Biol.	30(6)	1181-1193	1996	_,LAP6	YY1, OsLTPc2, OsLtpIII.2, LTP45,OsPKS1, PKS1, YY2, OsPKS21, PKS21, OsLAP6/OsPKS1, OsLAP6, OsCHS22, CHS22
21293	9701579	Himelblau,E., Mira,H., Lin,S.J., Culotta,V.C., Penarrubia,L. and Amasino,R.M.	Identification of a functional homolog of the yeast copper homeostasis gene ATX1 from Arabidopsis.	Plant Physiol.	117(4)	1227-1234	1998	CCH	OsATX1, OsCCH, OsaCCH, ATX1, OsHMP14, HMP14
21295		Hirano,H.Y. and Sano,Y.	Molecular characterisation of the waxy locus of rice	Plant Cell Physiol.	32(7)	989-997	1991	WX1	wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx
21296	9718725	Hirano,H.Y., Eiguchi,M. and Sano,Y.	A single base change altered the regulation of the Waxy gene at the posttranscriptional level during the domestication of rice.	Mol. Biol. Evol.	15(8)	978-987	1998	WX1	wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx
21297	1376404	Hirochika,H., Fukuchi,A. and Kikuchi,F.	Retrotransposon families in rice.	Mol. Gen. Genet.	233(1-2)	209-216	1992	TOS1-1,TOS1-2,_,_,TOS3,TOS2,TOS1,TOS4,TOS5	Tos1-1,Tos1-2,,,Tos3, Tos3-1,Tos2, Tos2-1,Tos1*, Tos1, Osr14, Tos4,Tos4,Tos5
21298	8755553	Hirochika,H., Sugimoto,K., Otsuki,Y., Tsugawa,H. and Kanda,M.	Retrotransposons of rice involved in mutations induced by tissue culture.	Proc. Natl. Acad. Sci. U.S.A.	93(15)	7783-7788	1996	TOS14,TOS6,TOS7,TOS8,TOS9,TOS10,TOS11,TOS12,TOS13,TOS15,TOS16,TOS18,TOS20,TOS17	Tos14,Tos6,Tos7,Tos8,Tos9,Tos10,Tos11,Tos12,Tos13,Tos15,Tos16,Tos18,Tos20,Tos17, Osr21, Tos17chr10, Tos17_Chr10, Tos17chr7, Tos17_Chr7
21299	15849298	Hirose,N., Makita,N., Yamaya,T. and Sakakibara,H.	Functional Characterization and Expression Analysis of a Gene, OsENT2, Encoding an Equilibrative Nucleoside Transporter in Rice Suggest a Function in Cytokinin Transport.	Plant Physiol.	138(1)	196-206	2005	ENT2,ENT4,ENT3,ENT1	OsENT2,OsENT4,OsENT3,OsENT1
21300	9522469	Hirose,T., Imaizumi,N., Scofield,G.N., Furbank,R.T. and Ohsugi,R.	cDNA cloning and tissue specific expression of a gene for sucrose transporter from rice (Oryza sativa L.).	Plant Cell Physiol.	38(12)	1389-1396	1997	SUT1	OsSUT1, OsSUT2
21301	11978873	Hirose,T., Takano,M. and Terao,T.	Cell Wall Invertase in Developing Rice Caryopsis: Molecular Cloning of OsCIN1 and Analysis of its Expression in Relation to its Role in Grain Filling.	Plant Cell Physiol.	43(4)	452-459	2002	SUT1,CIN1,INV1	OsSUT1, OsSUT2,OSCIN1, OsCIN1,OSINV1, OsINV1, OsCIN7, OsCIN8
21302	10631249	Ho,S.L., Tong,W.F. and Yu,S.M.	Multiple mode regulation of a cysteine proteinase gene expression in rice.	Plant Physiol.	122(1)	57-66	2000	EP3A	OsEP3A
21303	10611387	Hobo,T., Kowyama,Y. and Hattori,T.	A bZIP factor, TRAB1, interacts with VP1 and mediates abscisic acid-induced transcription.	Proc. Natl. Acad. Sci. U.S.A.	96(26)	15348-15353	1999	TRAB1,VP1	OsbZIP66, OsABF5, Osbzip66, OsTRAB1, bZIP66, ABF5,Vp1* (OSVP1), OsVP1, OsVp1, Vp1, ABI3, OsABI3, OsLFL4, OsVp-1, OSVP1
21304	12445121	Hong,Z., Ueguchi-Tanaka,M., Shimizu-Sato,S., Inukai,Y., Fujioka,S., Shimada,Y., Takatsuto,S., Agetsuma,M., Yoshida,S., Watanabe,Y., Uozu,S., Kitano,H., Ashikari,M. and Matsuoka,M.	Loss-of-function of a rice brassinosteroid biosynthetic enzyme, C-6 oxidase, prevents the organized arrangement and polar elongation of cells in the leaves and stem.	Plant J.	32(4)	495-508	2002	BRD1,D61	brd1, OsDWARF, DWARF, OsBR6ox, BR6ox, CYP85A1, CYP85A4, OsDWF, CYP85A1/OsDWARF, OsBRD1, OsCYP85A1,d61*, dwf42, d61, OsBRI1, OSBRI1, BRI1, Os BRI1, Osbri1, OsBRKq1, BRKq1
21305	11489190	Horie,T., Yoshida,K., Nakayama,H., Yamada,K., Oiki,S. and Shinmyo,A.	Two types of HKT transporters with different properties of Na+ and K+ transport in Oryza sativa	Plant J.	27(2)	129-138	2001	HKT1,HKT2	OsHKT1, OsHKT2;1, HKT2;1, Ni (Nipponbare)-OsHKT1, Po (Pokkali)-HKT1, OsHKT1;1, HKT1;1,OsHKT2, OsHKT2;2
21306	7991697	Hossain,M.A., Huq,E., Hodges,T.K. and E.	Sequence of a cDNA from Oryza sativa (L.) encoding the pyruvate decarboxylase 1 gene.	Plant Physiol.	106(2)	799-800	1994	PDC1	pdc1*, pdc1, pdc4, pdc 1, PDC 1, OsPDC1
21307	7846174	Hossain,M.A., McGee,J.D., Grover,A., Dennis,E.S., Peacock,W.J., Hodges,T.K. and E.S.].	Nucleotide sequence of a rice genomic pyruvate decarboxylase gene that lacks introns: a pseudo-gene?	Plant Physiol.	106(4)	1697-1698	1994	PDC3	pdc3*, pdc3, OsPDC3, OsSTA202
21308	8806407	Hossain,M.A., Huq,E., Grover,A., Dennis,E.S., Peacock,W.J. and Hodges,T.K.	Characterization of pyruvate decarboxylase genes from rice.	Plant Mol. Biol.	31(4)	761-770	1996	PDC1,PDC3,PDC2	pdc1*, pdc1, pdc4, pdc 1, PDC 1, OsPDC1,pdc3*, pdc3, OsPDC3, OsSTA202,pdc2*, pdc2
21309	9630507	Hotta,H., Aoki,N., Matsuda,T. and Adachi,T.	Molecular analysis of a novel protein kinase in maturing rice seed.	Gene	213(1-2)	47-54	1998	SAPK3	OsSAPK3, REK, OsSnRK2.3, SnRK2.3
21310	15684019	Houston,N.L., Fan,C., Xiang,Q.Y., Schulze,J.M., Jung,R. and Boston,R.S.	Phylogenetic analyses identify 10 classes of the protein disulfide isomerase family in plants, including single-domain protein disulfide isomerase-related proteins.	Plant Physiol.	137(2)	762-778	2005	PDIL1-5,APRL3,PDIL5-1,PDIL1-3,PDIL5-3,PDIL5-4,PDIL1-4,PDIL1-2,APRL6,APRL4,QSOXL1,PDIL2-2,PDIL1-1,APRL5,PDIL2-1,PDIL5-2,PDIL2-3,APRL1,APRL2	PDIL1;5, PDIL 1-5, OsPDIL1-5, OsTrx21, Trx21,OsAPRL3,PDIL5;1, OsPDIL5;1, PDIL 5-1, OsPDIL5-1, OsTrx09, Trx09, OsTrx9, Trx9,PDIL1;3, PDIL 1-3, OsPDIL1-3, OsTrx07, Trx07, OsTrx7, Trx7,PDIL5;3, PDIL 5-3, OsPDIL5-3, OsTrx06, Trx06, OsTrx6, Trx6,PDIL5;4, OsPDIL5;4, PDIL 5-4, OsPDIL5-4,PDIL1;4, PDIL 1-4, OsPDIL1-4, OsTrx05, Trx05, OsTrx5, Trx5,PDIL1;2, OsPDIL1;2, PDIL 1-2, OsPDIL1-2, OsTrx13, Trx13,OsAPRL6,OsAPRL4,OsQSOXL1,PDIL2;2, OsPDIL2;2, OsPDIL2-2, OsTrx02, Trx02, OsTrx2, Trx2,OsPDIL1;1, PDIL1;1, PDIL 1-1, PDI, OsPDIL1-1, OsTrx28, Trx28,OsAPRL5,PDIL2;1, OsPDIL2;1, OsPDIL2-1, OsTrx17, Trx17,PDIL5;2, OsPDIL5;2, OsPDIL5-2, OsTrx12, Trx12,PDIL2;3, OsPDIL2;3, PDIL 2-3, OsPDIL2-3, OsTrx27, Trx27,OsAPRL1, OsAPR1, APR1,OsAPRL2
21311	9773271	Hsieh,H.M. and Huang,P.C.	Promoter structure and activity of type 1 rice metallothionein-like gene.	DNA Seq.	9(1)	9-17	1998	MTI1A	MT1a, OsMT1a, OsMT1e, OsMT-I-1a, MT-I-1a, OsMT1e-P, MTa, rgMT, OsMT-1, rgMT-1
21312	7632910	Hsieh,H.M., Liu,W.K. and Huang,P.C.	A novel stress-inducible metallothionein-like gene from rice.	Plant Mol. Biol.	28(3)	381-389	1995	MTI1A	MT1a, OsMT1a, OsMT1e, OsMT-I-1a, MT-I-1a, OsMT1e-P, MTa, rgMT, OsMT-1, rgMT-1
21313	8980501	Hsieh,H.M., Liu,W.K., Chang,A. and Huang,P.C.	RNA expression patterns of a type 2 metallothionein-like gene from rice.	Plant Mol. Biol.	32(3)	525-529	1996	MTI1A,MT2A	MT1a, OsMT1a, OsMT1e, OsMT-I-1a, MT-I-1a, OsMT1e-P, MTa, rgMT, OsMT-1, rgMT-1,OsMT2a, MT2a, met6, Osmet6, OsMT-2, MT-2, rgMT-2, OsMT-I-2a, OsMT2-1, MT-I-2a, MT2-1
21315	8849907	Hu,J., Anderson,B. and Wessler,S.R.	Isolation and characterization of rice R genes: evidence for distinct evolutionary paths in rice and maize.	Genetics	142(3)	1021-1031	1996	PSH1,PS	Rb, Rb*, bhlh165, OsbHLH165, Rb2, OsPSH1, OsRb2,Ra*, bhlh13, OsbHLH013, OsbHLH13, Ra, OSB1, Ra1, OsGL3A, GL3A, OsB2, OsMYC7, MYC7, OsPs, Ps, OsHLH1, HLH1
21317	12645266	Huang,J., Wang,J.F., Zhang,H.S., Cao,Y.J., Lin,C.F., Wang,D. and Yang,J.S.	In silico cloning of glucose-6-phosphate dehydrogenase cDNA from rice (Oryza sativa L.)	Acta Genetica Sinica	29(11)	1012-1016	2002	_	OsG6PDH2, OsG6PDH1, OsG6PDH
21318	14672408	Huang,J., Zhang,H., Wang,J. and Yang,J.	Molecular cloning and characterization of rice 6-phosphogluconate dehydrogenase gene that is up-regulated by salt stress.	Mol. Biol. Rep.	30(4)	223-227	2003	6PGDH1	Os6PGDH1, Os6PGDH, 6PGDH
21319	15354353	Huang,J., Wang,J., Qiu,S. and Zhang,H.	Isolation and characterization of two cDNAs encoding translation initiation factor 1A from rice(Oryza sativa L.).	DNA Seq.	15(1)	39-43	2004	EIF1A1,EIF1A2	OseIF1A-1,OseIF1A-2
21320	16172918	Huang,J., Wang,J. and Zhang,H.	Rice ZFP15 Gene Encoding for a Novel C2H2-type Zinc Finger Protein Lacking DLN box, is Regulated by Spike Development but not by Abiotic Stresses.	Mol. Biol. Rep.	32(3)	177-183	2005	ZFP15	ZFP 15, OsZFP15
21321	1893114	Huang,J.K., Wen,L., Swegle,M., Tran,H.C., Thin,T.H., Naylor,H.M., Muthukrishnan,S. and Reeck,G.R.	Nucleotide sequence of a rice genomic clone that encodes a class I endochitinase.	Plant Mol. Biol.	16(3)	479-480	1991	CHT3	Cht3*, Cht3, Cht-3, CH6, OsChia1c, CHI7, OsCHI11, CHI11, OsPR3, PR3
21322	9063969	Huang,J.W., Chen,J.T., Yu,W.P., Shyur,L.F., Wang,A.Y., Sung,H.Y., Lee,P.D. and Su,J.C.	Complete structures of three rice sucrose synthase isogenes and differential regulation of their expressions.	Biosci. Biotechnol. Biochem.	60(2)	233-239	1996	RSUS2,RSUS1,RSUS3	sus2, RSus2(t), SUS2, SS1, OsScS1, RSs1, RSus2, OsSUS2, RSS1, RSus1, OsSusy2, Susy2, OsRSUS1, RSUS1,sus1, RSus1(t), SUS1, SS2, OsScS2, RSs2, RSus1, SuSy1, OsSUS1, RSS2, RSus2, OsRSUS1,RSus3(t), SUS3, SS3, OsScS3, RSs3, RSus3, OsSUS3, RSS3, OsEnS-111, Susy3, OsSusy3
21323	2263460	Huang,N., Koizumi,N., Reinl,S. and Rodriguez,R.L.	Structural organization and differential expression of rice alpha-amylase genes.	Nucleic Acids Res.	18(23)	7007-7014	1990	AMY1B,AMY3E,AMY1C,AMY1A,AMY3D	Amy1B*(RAmy1B), AMYC, RAmy1B, Amy2, Amy1B, Osamy-c, OSamy-c, OSamy--c ,Amy3D/E*(RAmy3D/E), alpha Amy8, alphaAmy8, AmyII-3, AMY1.4, Amy3E, Amy3D/E*, RAmy3D/E, Amy9, RAmy3E, alphaAmy8-C, AMY3E/AMY1.4, OsAmy3E, OsRamy3E,Amy1A/C*(RAmy1A/C), alpha Amy10, Amy1C, RAmy1A/C, Amy1A/C*, Amy3, RAmy1C, OsAmy1C, alphaAmy10-C,Amy1A/C*(RAmy1A/C), alpha Amy7, AMY1.1, Amy1A, RAmy1A/C, Amy1A/C*, Amy1, Amy1A_C, OsAmy1A, alphaAmy7-C, RAmy1A, AmyI-1, OsAmyI-1, OsRamy1A,Amy3D/E*(RAmy3D/E), alpha Amy3, AmyII-4, AMY1.3, Amy3D, Amy3D/E*, RAmy3D/E, Amy3D_E, Amy8, aAmy3, RAmy3D, OsAmy3D, alphaAmy3, OsRamy3D
21324	2102847	Huang,N., Sutliff,T.D., Litts,J.C. and Rodriguez,R.L.	Classification and characterization of the rice alpha-amylase multigene family.	Plant Mol. Biol.	14(5)	655-668	1990	AMY1B,AMY3A,AMY1C,AMY1A,AMY3C,AMY2A,AMY3B,AMY3D,AMY3E	Amy1B*(RAmy1B), AMYC, RAmy1B, Amy2, Amy1B, Osamy-c, OSamy-c, OSamy--c ,Amy3A/B/C*(RAmy3A/B/C), Amy3A, RAmy3A/B/C, Amy3A/B/C*, AMY1.2, Amy5, RAmy3A, OsEnS-129,Amy1A/C*(RAmy1A/C), alpha Amy10, Amy1C, RAmy1A/C, Amy1A/C*, Amy3, RAmy1C, OsAmy1C, alphaAmy10-C,Amy1A/C*(RAmy1A/C), alpha Amy7, AMY1.1, Amy1A, RAmy1A/C, Amy1A/C*, Amy1, Amy1A_C, OsAmy1A, alphaAmy7-C, RAmy1A, AmyI-1, OsAmyI-1, OsRamy1A,Amy3A/B/C*(RAmy3A/B/C), AmyII-6, AMY1.7, Amy3C, RAmy3A/B/C, Amy3A/B/C*, Amy7, AMY3B, RAmy3C, OsAmy3B,Amy2A*(RAmy2A), AMY1.5, AMYC2, RAmy2A, Amy4, Amy2A,Amy3A/B/C*(RAmy3A/B/C), alpha Amy6, AmyII-5, AMY1.6, Amy1.6, Amy3B, BRAmy3A/B/C, Amy3A/B/C*, Amy6, RAmy3B, alphaAmy6-C, OsRamy3B, OsAmy3C,Amy3D/E*(RAmy3D/E), alpha Amy3, AmyII-4, AMY1.3, Amy3D, Amy3D/E*, RAmy3D/E, Amy3D_E, Amy8, aAmy3, RAmy3D, OsAmy3D, alphaAmy3, OsRamy3D,Amy3D/E*(RAmy3D/E), alpha Amy8, alphaAmy8, AmyII-3, AMY1.4, Amy3E, Amy3D/E*, RAmy3D/E, Amy9, RAmy3E, alphaAmy8-C, AMY3E/AMY1.4, OsAmy3E, OsRamy3E
21325	10691130	Huang,X., Wang,X., Jia,H., Feng,S., Cao,K. and Sun,C.	Isolation and mapping of rFUS6, a rice orthologue of Arabidopsis thaliana FUS6.	DNA Res.	6(6)	375-379	1999		
21326	10480383	Huq,E. and Hodges,T.K.	An anaerobically inducible early (aie) gene family from rice.	Plant Mol. Biol.	40(4)	591-601	1999	_,_,_	aie1a,aie1b,aie2
21327	9008398	Huq,E., Hirayama,L., Hossain,M.A. and Hodges,T.K.	Characterization of a cDNA Encoding a Polyubiquitin Gene in Rice (Accession No. U37687)(PGR97-004)	Plant Physiol.	113(1)	305	1997	RUBQ2	rubq2, rub1, Ubq1, Rubq1, UBQ10 
21328	7480354	Huq,M.E., Hossain,M.A. and Hodges,T.K.	Cloning and sequencing of a cDNA encoding pyruvate decarboxylase 2 gene (Accession No. U27350) from rice (PGR95-072)	Plant Physiol.	109(2)	722	1995	PDC2	pdc2*, pdc2
21329	9106509	Igarashi,Y., Yoshiba,Y., Sanada,Y., Yamaguchi-Shinozaki,K., Wada,K. and Shinozaki,K.	Characterization of the gene for delta1-pyrroline-5-carboxylate synthetase and correlation between the expression of the gene and salt tolerance in Oryza sativa L.	Plant Mol. Biol.	33(5)	857-865	1997	P5CS	OsP5CS, P5CS1, OsP5CS1, OsALDH18B1, ALDH18B1, OsP5CS-1, P5CS-1
21330	10945345	Igarashi,Y., Yoshiba,Y., Takeshita,T., Nomura,S., Otomo,J., Yamaguchi-Shinozaki,K. and Shinozaki,K.	Molecular cloning and characterization of a cDNA encoding proline transporter in rice.	Plant Cell Physiol.	41(6)	750-756	2000	P5CS,PROT	OsP5CS, P5CS1, OsP5CS1, OsALDH18B1, ALDH18B1, OsP5CS-1, P5CS-1,OsProT, ProT, OsProT2, ProT2
21331	14530400	Ilic,K., SanMiguel,P.J. and Bennetzen,J.L.	A complex history of rearrangement in an orthologous region of the maize, sorghum, and rice genomes.	Proc. Natl. Acad. Sci. U.S.A.	100(21)	12265-12270	2003	ADH1,CYCH;1	Adh1, Adh1/2, adh1/adh2, OsADH1,Os;cycH;1, Orasa;CycH1;1, cycH1, CYCH1 
21332	15310079	Imai,R., Ali,A., Pramanik,H.R., Nakaminami,K., Sentoku,N. and Kato,H.	A distinctive class of spermidine synthase is involved in chilling response in rice.	J. Plant Physiol.	161(7)	883-886	2004	SPDS1,SPDS2	OsSPDS1, OsSPDS, SPDS,OsSPDS2, OsSPMS1, SPMS1
21333	9278162	Imaizumi,N., Ku,M.S., Ishihara,K., Samejima,M., Kaneko,S. and Matsuoka,M.	Characterization of the gene for pyruvate,orthophosphate dikinase from rice, a C3 plant, and a comparison of structure and expression between C3 and C4 genes for this protein.	Plant Mol. Biol.	34(5)	701-716	1997	FLO4	FLO4-4, flo4, flo4-2, flo4-3, ppdk, OsPPDK, PPDK1, CPDK1, PPDKB, OsPPDKB, cyOsPPDKB, OsPBDK, PBDK, osppdkb, PPD, cyPPDK, chPPDKB, chOsPPDKB
21334	15829602	Inukai,Y., Sakamoto,T., Ueguchi-Tanaka,M., Shibata,Y., Gomi,K., Umemura,I., Hasegawa,Y., Ashikari,M., Kitano,H. and Matsuoka,M.	Crown rootless1, Which Is Essential for Crown Root Formation in Rice, Is a Target of an AUXIN RESPONSE FACTOR in Auxin Signaling.	Plant Cell	17(5)	1387-1396	2005	CRL1,CRLL1,CRLL2,IAA3,IG1,ARF1,IAA4,RA2	crl1, crl1*, ARL1, ARL1/CRL1, OsLBD3-2, LBD3-2, OsCRL1,OsCrll1, OsLBD3-1, LBD3-1, CRL1L1,OsCrll2, Crll2, CRL1L2,OsIAA3,CRL1L3, CRLL3, OsCrll3, OsIG1, OsLBD1-9, LBD1-9, OsAS2, AS2,OsARF1, arf1, OsARF23, ARF23,OsIAA4, IAA20, OsIAA20,ra2, Osra2, OsCrll4, CRL1L4, CRLL4, OsRA2
21335	11470540	Ishibashi,T., Kimura,S., Furukawa,T., Hatanaka,M., Hashimoto,J. and Sakaguchi,K.	Two types of replication protein A 70 kDa subunit in rice, Oryza sativa: molecular cloning, characterization, and cellular &amp; tissue distribution.	Gene	272(1-2)	335-343	2001	_,RPA1,RPA1A	OsRPA32, RPA32, RPA2A ,OsRPA1, OsRPA70b, RPA70b,OsRPA70a, OsRPA1a, RPA1a
21336	12711392	Ishibashi,T., Kimura,S., Yamamoto,T., Furukawa,T., Takata,K., Uchiyama,Y., Hashimoto,J. and Sakaguchi,K.	Rice UV-damaged DNA binding protein homologues are most abundant in proliferating tissues.	Gene	308	79-87	2003	_,UVDDB1	OsWD40-2, UV-DDB2, OsUV-DDB2 ,  OsDWD10, DWD10,UV-DDB1, OsUV-DDB1, OsUV-DDB, OsDDB1, DDB1
21337	15978034	Ishibashi,T., Koga,A., Yamamoto,T., Uchiyama,Y., Mori,Y., Hashimoto,J., Kimura,S. and Sakaguchi,K.	Two types of replication protein A in seed plants.	FEBS J.	272(13)	3270-3281	2005	RPA1A,_,_,RPA1	OsRPA70a, OsRPA1a, RPA1a,OsRPA14, RPA14, RPA3,OsRPA32, RPA32, RPA2A ,OsRPA1, OsRPA70b, RPA70b
21338	16140596	Ishibashi,T., Isogai,M., Kiyohara,H., Hosaka,M., Chiku,H., Koga,A., Yamamoto,T., Uchiyama,Y., Mori,Y., Hashimoto,J., Ausio,J., Kimura,S. and Sakaguchi,K.	Higher plant RecA-like protein is homologous to RadA.	DNA Repair (Amst.)	5(1)	80-88	2006	RADA	OsRADA, OsRadA, OsLonP2, LONP2
21339	7767602	Ishikawa,A., Tsubouchi,H., Iwasaki,Y. and Asahi,T.	Molecular cloning and characterization of a cDNA for the alpha subunit of a G protein from rice.	Plant Cell Physiol.	36(2)	353-359	1995	D1	d1, GPA1, GA1, OsGA1, RGA1, dwf1, XA7, RGA, D1/RGA1, D89, TGW5, OsTGW5, SRG5, OsSRG5
21340	8665097	Ishikawa,A., Iwasaki,Y. and Asahi,T.	Molecular cloning and characterization of a cDNA for the beta subunit of a G protein from rice.	Plant Cell Physiol.	37(2)	223-228	1996	RGB1	OsWD40-80, RGbeta1, OsRGB1,  OsDWD38, DWD38
21341	16412081	Ishimaru,Y., Suzuki,M., Tsukamoto,T., Suzuki,K., Nakazono,M., Kobayashi,T., Wada,Y., Watanabe,S., Matsuhashi,S., Takahashi,M., Nakanishi,H., Mori,S. and Nishizawa,N.K.	Rice plants take up iron as an Fe3+-phytosiderophore and as Fe2+	Plant J.	45(3)	335-346	2006	ZIP2,_,ZIP6,IRT1,IRT2,ZIP3,FRO2,ZIP5,ZIP1,ZIP4,ZIP7	OsZIP2, OsZIP11, ZIP11 ,OsFRO1,OsZIP6,OsIRT1, ZIP10, OsZIP10, OsZIP12, ZIP12,OsIRT2, OsIRT1, OsZIP15, ZIP15,OsZIP3,OsFRO2, OsFRO1,OsZIP5, OsZIP8, ZIP8, OsZIP9,OsZIP1,OsZIP4,OsZIP7
21342	7766047	Ishiwatari,Y., Honda,C., Kawashima,I., Nakamura,S., Hirano,H., Mori,S., Fujiwara,T., Hayashi,H. and Chino,M.	Thioredoxin h is one of the major proteins in rice phloem sap.	Planta.	195(3)	456-463	1995	TRXH	trxh, Trx-H, OsTRXh1, TRXh1, OsTrxh1, Os1, OsTrx23, Trx23, RPP13-1
21343	15574840	Ishiyama,K., Inoue,E., Tabuchi,M., Yamaya,T. and Takahashi,H.	Biochemical background and compartmentalized functions of cytosolic glutamine synthetase for active ammonium assimilation in rice roots.	Plant Cell Physiol.	45(11)	1640-1647	2004	GLN1;1,GLN1;2	OsGLN1;1, GS1, RGS28, OsGS1;1, GS1;1, OsGS, GS1, OsGS1, GLN1-1, OsGS1-1, GS1-1, GS1.1, OsGS1.1,OsGLN1;2, GSr, RGS8, OsGS1;2, GS1;2, GS1, OsGS1-2, GS1-2, OsGS1.2, GS1.2
21344	1368754	Ito,H., Hiraoka,N., Ohbayashi,A. and Ohashi,Y.	Purification and characterization of rice peroxidases.	Agric. Biol. Chem.	55(10)	2445-2454	1991	_,_,_,_	RP-6,RP-7,RP-I,RP-2 or RP-4, prx13
21346	7659758	Ito,H., Matsui,H., Honma,M. and Ohashi,Y.	Genomic nucleotide sequence of a rice peroxidase gene. (DDBJ 49551)(PGR95-026)	Plant Physiol.	108(4)	1747-1749	1995	POXN	poxN, prx38, prxRPN, RPN, poxN/PRX38, Osprx38, OsPOXN
21347	10773343	Ito,H., Hiraga,S., Tsugawa,H., Matsui,H., Honma,M., Otsuki,Y., Murakami,T. and Ohashi,Y.	Xylem-specific expression of wound-inducible rice peroxidase genes in transgenic plants.	Plant Sci.	155(1)	85-100	2000	POXA,POXN	poxA, prx126, OsPrx126, prxRPA, RPA,poxN, prx38, prxRPN, RPN, poxN/PRX38, Osprx38, OsPOXN
21348	11846882	Ito,M., Sentoku,N., Nishimura,A., Hong,S.K., Sato,Y. and Matsuoka,M.	Position dependent expression of GL2-type homeobox gene, Roc1: significance for protoderm differentiation and radial pattern formation in early rice embryogenesis.	Plant J.	29(4)	497-507	2002	ROC1	Roc1(t), GL2-1, OsHDZ23, OsHDZIP23, HDZ23, HDZIP23
21349	9426242	Ito,Y., Saisho,D., Nakazono,M., Tsutsumi,N. and Hirai,A.	Transcript levels of tandem-arranged alternative oxidase genes in rice are increased by low temperature.	Gene	203(2)	121-129	1997	AOX1B,AOX1A	AOX1b, OsAOX1b,Ao1-1, AOX1a, OsAOX1a, AOX 1a
21350	10095070	Ito,Y., Eiguchi,M. and Kurata,N.	Expression of novel homeobox genes in early embryogenesis in rice.	Biochim. Biophys. Acta	1444(3)	445-450	1999	OSH45	OSH42, OSH44, H45
21351	12034492	Ito,Y., Hirochika,H. and Kurata,N.	Organ-specific alternative transcripts of KNOX family class 2 homeobox genes of rice.	Gene	288(1-2)	41-47	2002	HOS59,KNAT7,HOS58	,HOS66, HB365, OsKNAT7,
21352	15094187	Ito,Y., Chujo,A., Eiguchi,M. and Kurata,N.	Radial axis differentiation in a globular embryo is marked by HAZ1, a PHD-finger homeobox gene of rice.	Gene	331	9-15	2004	HAZ1	OsHAZ1, OsPHD28, PHD28
21353	16081169	Ito,Y., Takaya,K. and Kurata,N.	Expression of SERK family receptor-like protein kinase genes in rice.	Biochim. Biophys. Acta	1730(3)	253-258	2005	SG2,_,SERK1	OsSERK1, SERK1, OsBAK1, BAK1, OsSERK1/OsBAK1, OsBISERK1, BISERK1, OsSerk1, OsBAK1-1, 08SG2/OsBAK1, 08SG2, OsSG2,ORK1, OsRLCK246, RLCK246,OsSERK1, OsSERK2, OsBiSERK1, SERK2, BiSERK1, OsSerk2, OsBAK1-2
21354	11438692	Itoh,H., Ueguchi-Tanaka,M., Sentoku,N., Kitano,H., Matsuoka,M. and Kobayashi,M.	Cloning and functional analysis of two gibberellin 3 beta -hydroxylase genes that are differently expressed during the growth of rice.	Proc. Natl. Acad. Sci. U.S.A.	98(15)	8909-8914	2001	D18,GA3OX1	d18-h  (d18-I, d18h), dwf15, d25, d18, d18-k, d18-AD, d18-dy, OsGA3ox2, ga3ox2, OsGA3OX2, GA3OX2, OsGA3ox-2, GA3ox-2, GA3ox1,OsGA3ox1, GA3ox1, OsGA3OX1
21355	7682174	Iwabuchi,M., Kyozuka,J. and Shimamoto,K.	Processing followed by complete editing of an altered mitochondrial atp6 RNA restores fertility of cytoplasmic male sterile rice.	EMBO J.	12(4)	1437-1446	1993	AATP6,_	A-atp6,atp6, N-atp6, B-ATP6, B-atp6, atp6-1
21356	12451175	Iwai,H., Masaoka,N., Ishii,T. and Satoh,S.	A pectin glucuronyltransferase gene is essential for intercellular attachment in the plant meristem.	Proc. Natl. Acad. Sci. U.S.A.	99(25)	16319-16324	2002	_	OsGUT1, GUT1
21357	12059099	Iwai,T., Kaku,H., Honkura,R., Nakamura,S., Ochiai,H., Sasaki,T. and Ohashi,Y.	Enhanced resistance to seed-transmitted bacterial diseases in transgenic rice plants overproducing an oat cell-wall-bound thionin.	Mol. Plant Microbe Interact.	15(6)	515-521	2002	THI1	OsTHI9, THI9, Osthi1, thi1, Osthi8, thi8, OsTHION9, THION9
21358		Iwamoto,M., Maekawa,M., Saito,A., Higo,H. and Higo,K.	Evolutionary relationship of plant catalase genes inferred from exon-intron structures: isozyme divergence after the separation of monocots and dicots	Theor. Appl. Genet.	97(1-2)	9-19	1998	CATA,CATB,NOE1	CATA1, Cat A1*, OSCAT-A, Cat2, CatA1, CAT-A, OsCatA, OsCAT, CAT, catA, OSCATA, OsCATc, OsCATA, OsCAT1A, CAT1, OsCAT1, OsCATC, OsCAT2,CatB, CAT-B, OsCatB, OsCATB, OsCAT1B, CAT1B, CAT2, OsCAT2,CATC, OsCat, OsCatC, OsCATC, OsNOE1, noe1, catC, OsCATC, CAT3, OsCAT3, LLM9428, OsLLM9428
21359		Iwamoto,M., Nagashima,H., Nagamine,T., Higo,H. and Higo,K.	p-SINE1-like intron of the CatA catalase homologs and phylogenetic relationships among AA-genome Oryza and related species	Theor. Appl. Genet.	98(6-7)	853-861	1999	CATA	CATA1, Cat A1*, OSCAT-A, Cat2, CatA1, CAT-A, OsCatA, OsCAT, CAT, catA, OSCATA, OsCATc, OsCATA, OsCAT1A, CAT1, OsCAT1, OsCATC, OsCAT2
21360	9055819	Iwasaki,T., Saito,Y., Harada,E., Kasai,M., Shoji,K., Miyao,M. and Yamamoto,N.	Cloning of cDNA encoding the rice 22 kDa protein of Photosystem II (PSII-S) and analysis of light-induced expression of the gene.	Gene	185(2)	223-229	1997	PSBS2,ELIP,CP26	PsbS, OsPsbS2,OsELIP,ASCAB9-A, OsCP26, Lhcb5, LHCB5, OsLHCB5
21361	9654145	Iwasaki,T., Matsuki,R., Shoji,K., Sanmiya,K., Miyao,M. and Yamamoto,N.	A novel importin alpha from rice, a component involved in the process of nuclear protein transport.	FEBS Lett.	428(3)	259-262	1998	IMPA1A,IMPA1B,IMPA2	rImpa1a, Impa1a, Osimpa1, Osimpalpha1, OsImpalpha1a, Impalpha1a,OsIMPA1B, IMPalpha1B, OsIMPalpha1B, Imp3, OsImpalpha1b, Impalpha1b,
21362	7757340	Iwasaki,Y., Komano,M., Ishikawa,A., Sasaki,T. and Asahi,T.	Molecular cloning and characterization of cDNA for a rice protein that contains seven repetitive segments of the Trp-Asp forty-amino-acid repeat (WD-40 repeat).	Plant Cell Physiol.	36(3)	505-510	1995	RACK1	RACK1A, RWD, OsWD40-21, OsRACK1, OsRACK1A
21363	15597740	Iyer,A.S. and McCouch,S.R.	The rice bacterial blight resistance gene xa5 encodes a novel form of disease resistance.	Mol. Plant Microbe Interact.	17(12)	1348-1354	2004	XA5	xa5, xa-5, Xa5, TFIIAy, OsTFIIAgamma5, TFIIAgamma5, OsTFIIAgamma5/Xa5
21364	7919992	Izawa,T., Foster,R., Nakajima,M., Shimamoto,K. and Chua,N.H.	The rice bZIP transcriptional activator RITA-1 is highly expressed during seed development.	Plant Cell	6(9)	1277-1287	1994	RITA1	OsbZIP20, bZIP20, RITA-1, RISBZ3
21365	1376283	Izumi,H., Adachi,T., Fujii,N., Matsuda,T., Nakamura,R., Tanaka,K., Urisu,A. and Kurosawa,Y.	Nucleotide sequence of a cDNA clone encoding a major allergenic protein in rice seeds. Homology of the deduced amino acid sequence with members of alpha-amylase/trypsin inhibitor family.	FEBS Lett.	302(3)	213-216	1992	_	RA17, RAP, RAG1, OsEnS-97
21366	15516498	Jan,A., Yang,G., Nakamura,H., Ichikawa,H., Kitano,H., Matsuoka,M., Matsumoto,H. and Komatsu,S.	Characterization of a xyloglucan endotransglucosylase gene that is up-regulated by gibberellin in rice.	Plant Physiol.	136(3)	3670-3681	2004	XTH17	OsXTH17, OsXTH8, XTH8
21367	12177461	Jang,I.C., Choi,W.B., Lee,K.H., Song,S.I., Nahm,B.H. and Kim,J.K.	High-Level and Ubiquitous Expression of the Rice Cytochrome c Gene OsCc1 and Its Promoter Activity in Transgenic Plants Provides a Useful Promoter for Transgenesis of Monocots.	Plant Physiol.	129(4)	1473-1481	2002	CC1	OsCc1, OsCc-1
21368	14750524	Jang,S., Lee,B., Kim,C., Kim,S.-J., Yim,J., Han,J.-J., Lee,S., Kim,S.-R. and An,G.	The OsFOR1 gene encodes a polygalacturonase-inhibiting protein that regulates floral organ number in rice	Plant Mol. Biol.	53(3)	357-369	2003	FOR1	OsFOR1, Osfor1, OsPGIP5, PGIP5
21369	10080707	Jeon,J.S., Chung,Y.Y., Lee,S., Yi,G.H., Oh,B.G. and An,G.	Isolation and characterization of an anther-specific gene, RA8, from rice (Oryza sativa L.).	Plant Mol. Biol.	39(1)	35-44	1999	RA8	OsBURP15, BURP15
21370	10852934	Jeon,J.S., Jang,S., Lee,S., Nam,J., Kim,C., Lee,S.H., Chung,Y.Y., Kim,S.R., Lee,Y.H., Cho,Y.G. and An,G.	leafy hull sterile1 is a homeotic mutation in a rice MADS box gene affecting rice flower development.	Plant Cell	12(6)	871-884	2000	LHS1	OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO, OsLHS1, OsLG3b, LG3b, qLGY3, LGY3, DLN80, OsDLN80, OLR, OsOLR, GW3p6, OsGW3p6, OsMADS1GW3p6, MADS1GW3p6, qLGY3/OsLG3b/GW3p6
21371	15983871	Ji,X., Van den Ende,W., Van Laere,A., Cheng,S. and Bennett,J.	Structure, evolution, and expression of the two invertase gene families of rice.	J. Mol. Evol.	60(5)	615-634	2005	NIN5,CIN1,NIN7,_,CIN7,CIN3,NIN8,CIN5,CIN4,NIN2,NIN6,CIN6,GIF1,INV1,SMS2,CIN9,NIN1,NIN3,NIN4	OsNIN5,OSCIN1, OsCIN1,OsNIN7,OSINV2, OsINV2, OsVIN1, VIN1,OsCIN6, OsCIN7, CIN6, CWIN6, OsCWIN6 ,OSINV4, OsINV4, INV4, OsCIN3,OsNIN8,OsCIN4, OsCIN5, CIN4, CWIN4, OsCWIN4,OsCIN4,OsNIN2, CytINV, OsCytINV,OsNIN6, INV6, OsINV6,OsCIN5, CIN5, OsCIN6,gif1, CIN2, OsCIN2, OsGIF1, WB1, OsWB1, GIF1/OsCIN2,OSINV1, OsINV1, OsCIN7, OsCIN8,INV3, OSINV3, OsINV3, OsVIN2, VIN2, VINV, OsSMS2,OsCIN9,OsNIN1,OsNIN3,OsNIN4
21372	12475618	Jiang,H., Dian,W., Liu,F. and Wu,P.	Isolation and characterization of two fructokinase cDNA clones from rice.	Phytochemistry	62(1)	47-52	2003	FKII,FKI	OsFKII, OsFK1, FK1, FRK-2, OsFRK-2, FRK2, OsFRK2,OsFKI, OsFK2, FK2
21373	15849305	Jiang,H., Wang,S., Dang,L., Wang,S., Chen,H., Wu,Y., Jiang,X. and Wu,P.	A Novel Short-Root Gene Encodes a Glucosamine-6-Phosphate Acetyltransferase Required for Maintaining Normal Root Cell Shape in Rice.	Plant Physiol.	138(1)	232-242	2005	GNA1	OsGNA1
21374	15169941	Jiang,S. and Ramachandran,S.	Identification and Molecular Characterization of Myosin Gene Family in Oryza sativa Genome.	Plant Cell Physiol.	45(5)	590-599	2004	_,_,_,_,_,_,_,_,_,_,_,_,_,_	OSMYOXIH, OsMyoXIH,OSMYOXIC, OsMyoXIC,OSMYOXID, OsMyoXID,OSMYOXIF, OsMyoXIF,OSMYOXIG, OsMyoXIG,OsMyoXIA,OSMYOXI-I, OsMyoXI-I,OSMYOXIJ, OsMyoXIJ,OSMYOVIIIB, OsMyoVIIIB,OSMYOXIL, OsMyoXIL,OSMYOXIK, OsMyoXIK,OSMYOXIB, OsMyoXIB,OsMyoVIIIA, OsMyoVIIIA-1, OsMyoVIIIA-2,OsMyoXIE, OsMyoXIE-1, OsMyoXIE-2, OsMyoXIE-3
21376		Jiang,S.Y., Chen,Q.F. and Fang,X.J.	Identification of differentially Expressed Genes in Photo-period Sensitive Genic Male Sterile Rice by Randomly Amplified cDNAs Using RAPD Primers	Chin. Sci. Bull.	44(4)	348-351	1999	_	RPG43
21377		Jiang,S.Y., Chen,Q.F. and Fang,X.J.	Identifying and mapping cDNA fragments related to rice photoperiod sensitive genic male sterility	Chin. Sci. Bull.	45(6)	536-540	2000	_	RPG43
21378	15952069	Jiang,S.Y., Cai,M. and Ramachandran,S.	The Oryza sativa no pollen (Osnop) gene plays a role in male gametophyte development and most likely encodes a C2-GRAM domain-containing protein.	Plant Mol. Biol.	57(6)	835-853	2005	NOP	OsNOP, OsC2DP53, C2DP53
21379	9517002	Joshee,N., Kisaka,H. and Kitagawa,Y.	Isolation and characterization of a water stress-specific genomic gene, pwsi 18, from rice.	Plant Cell Physiol.	39(1)	64-72	1998	WSI18	OsLEA14, OsLEA14a, OsLEA14b, wsi18, pwsi18, OsWsi18, OsLEA14/WSI18
21380	15047876	Jun,S.H., Han,M.J., Lee,S., Seo,Y.S., Kim,W.T. and An,G.	OsEIN2 is a Positive Component in Ethylene Signaling in Rice.	Plant Cell Physiol.	45(3)	281-289	2004	EIN2	OsEIN2, MHZ7/OsEIN2, OsEIN2/MHZ7, MHZ7 
21381	16141453	Jung,K.H., Han,M.J., Lee,Y.S., Kim,Y.W., Hwang,I., Kim,M.J., Kim,Y.K., Nahm,B.H. and An,G.	Rice undeveloped tapetum1 is a major regulator of early tapetum development.	Plant Cell	17(10)	2705-2722	2005	UDT1	Udt1, bHLH164, OsUDT1, OsbHLH164 
21383	11527396	Jwa,N.S., G., Rakwal,R., Park,C.H. and V.	Molecular cloning and characterization of a novel Jasmonate inducible pathogenesis-related class 10 protein gene, JIOsPR10, from rice (Oryza sativa L.) seedling leaves.	Biochem. Biophys. Res. Commun.	286(5)	973-983	2001	JIOSPR10	JIOsPR10, OsPR10, PR10, OsJiPR10, JiPR10, OsPR10c, PR10c
21384	8978691	Kadowaki,K., Kubo,N., Ozawa,K. and Hirai,A.	Targeting presequence acquisition after mitochondrial gene transfer to the nucleus occurs by duplication of existing targeting signals.	EMBO J.	15(23)	6652-6661	1996	_,RPS11,_,RPS11.P	s11-2,rps11, s11-1,coxVb, COX5b,rps11.p, pseudo-rps11 
21385	9057336	Kaminaka,H., Morita,S., Yokoi,H., Masumura,T. and Tanaka,K.	Molecular cloning and characterization of a cDNA for plastidic copper/zinc-superoxide dismutase in rice (Oryza sativa L.).	Plant Cell Physiol.	38(1)	65-69	1997	SOD4	OsSOD4, OsCSD4, OsCu/Zn-SOD1, Cu/Zn-SOD1, OsCSD2, CSD2, OsSOD4-Cu/Zn, SOD4-Cu/Zn, Cu/ZnSOD3, CuZnSOD3, sodCp, OssodCp, OsCu/ZnSOD3, CuZnSOD2, OsSOD1
21387	10050312	Kaminaka,H., Morita,S., Nakajima,M., Masumura,T. and Tanaka,K.	Gene cloning and expression of cytosolic glutathione reductase in rice (Oryza sativa L.).	Plant Cell Physiol.	39(12)	1269-1280	1998	GR2	OsGR2, RGRC2, OsGR, OsGR3, OsRGRC2
21388	10192910	Kaminaka,H., Morita,S., Tokumoto,M., Yokoyama,H., Masumura,T. and Tanaka,K.	Molecular cloning and characterization of a cDNA for an iron-superoxide dismutase in rice (Oryza sativa L.).	Biosci. Biotechnol. Biochem.	63(2)	302-308	1999	SODB	SodB, Fe-SOD, Fe- SOD, OsFe-SOD, Fe+-SOD, OsFe+-SOD, OsFe-SODa, OsFe-SODb, OsFeSODb, FeSODb, OsFSD1.2, FSD1.2, FeSOD2, OsFSD2, FSD2, OsFSD1, FSD1, ALM1, OsALM1
21390	11118226	Kaminska,M., Deniziak,M., Kerjan,P., Barciszewski,J. and Mirande,M.	A recurrent general RNA binding domain appended to plant methionyl-tRNA synthetase acts as a cis-acting cofactor for aminoacylation.	EMBO J.	19(24)	6908-6917	2000	_	MetRS, MRS
21391	7816019	Kamisugi,Y., Nakayama,S., Nakajima,R., Ohtsubo,H., Ohtsubo,E. and Fukui,K.	Physical mapping of the 5S ribosomal RNA genes on rice chromosome 11.	Mol. Gen. Genet.	245(2)	133-138	1994	R5S1	R5s1*, r5s, R5s1
21392	12974810	Kamiya,N., Itoh,J., Morikami,A., Nagato,Y. and Matsuoka,M.	The SCARECROW gene's role in asymmetric cell divisions in rice plants.	Plant J.	36(1)	45-54	2003	SHR1,SCR	OsSHR1, OsGRAS-38, OsGRAS38, GRAS-38, GRAS38, DLN189, OsDLN189, OsSHR, SHR,OsSCR, OsSCR2, SCR2, OsGRAS-51, OsGRAS51, GRAS-51, GRAS51
21393	14561741	Kamiya,T. and Maeshima,M.	Residues in internal repeats of the rice cation/h+ exchanger are involved in the transport and selection of cations.	J. Biol. Chem.	279(1)	812-819	2004	CAX1A	OsCAX1a, CAX1a, CAX1, OsCAX1, OsNCX2, OsNCX2.1, OsNCX2.2, NCX2, OsVCAX1a
21394	16087344	Kanegae,H., Miyoshi,K., Hirose,T., Tsuchimoto,S., Mori,M., Nagato,Y. and Takano,M.	Expressions of rice sucrose non-fermenting-1 related protein kinase 1 genes are differently regulated during the caryopsis development.	Plant Physiol. Biochem.	43(7)	669-679	2005	OSK1,OSK3,OSK4	osk1, SnRK1A, OsSnRK1A, OsSNRK1a, SnRK1A/OSK1, SnRK1a, OsSnRK1.2, SnRK1.2, OsSnRK1alphaA, SnRK1alphaA,osk3, OsATG1b, ATG1B, OSK5, osk5, OSK35, SnRK1b, OsK35, OsSnRK1.1, SnRK1.1, OsSnRK1alphaB, SnRK1alphaB,osk4, OsK4, OsATG1c, ATG1C, SnRK1B, snrk1b, SnRK1B/OSK24, OSK24, OsK24, OsSNRK1b, OsSnRK1.4, SnRK1.4, OsSnRK1alphaC, SnRK1alphaC
21395	9085264	Kang,H.G. and An,G.	Isolation and characterization of a rice MADS box gene belonging to the AGL2 gene family.	Mol. Cells	7(1)	45-51	1997	MADS5	OsMADS5, FDRMADS2
21396	7579155	Kang,H.G., Noh,Y.S., Chung,Y.Y., Costa,M.A., An,K. and An,G.	Phenotypic alterations of petal and sepal by ectopic expression of a rice MADS box gene in tobacco.	Plant Mol. Biol.	29(1)	1-10	1995	RAG	MADS3, OsMADS3, OsMADS3(t), RMADS222, RAG1, rf3
21397	9339904	Kang,H.G., Jang,S., Chung,J.E., Cho,Y.G. and An,G.	Characterization of two rice MADS box genes that control flowering time.	Mol. Cells	7(4)	559-566	1997	MADS24,MADS7	OsMADS24, MADS8, OsMADS8, OsMADS8/24 ,OsMADS7, OsMADS45, FDRMADS1, RMADS216, AGL6, M79, MADS45, Os MADS7, Os MADS45, OsMADS7/45
21398	7858231	Kang,M.S., Choi,Y.J., Kim,M.C., Lim,C.O., Hwang,I. and Cho,M.J.	Isolation and characterization of two beta-tubulin cDNA clones from rice.	Plant Mol. Biol.	26(6)	1975-1979	1994	TUB4,TUB3	OsTUB4, TUBB4, OSTB-16, R1623, RTUB-1, Ostub16,OsTUB3, TUBB3, RTUB-2
21399	9414571	Kanjo,N. and Inokuchi,H.	Nucleotide sequence of a cDNA clone encoding ferrochelatase from rice (Accession No.AB007120) (PGR97-175)	Plant Physiol.	115(4)	1729-1731	1997		
21401	15159631	Kanno,T., Kasai,K., Ikejiri-Kanno,Y., Wakasa,K. and Tozawa,Y.	In vitro reconstitution of rice anthranilate synthase: distinct functional properties of the alpha subunits OASA1 and OASA2.	Plant Mol. Biol.	54(1)	11-23	2004	ASA2,ASB2,ASA1,TDD1	OASA2 (=ASA2), OsASA2, OASA2, ASalpha2, OsASalpha2, OASA2,OASB2, OsASB2, TRP4, OsTRP4,OASA1 (=ASA1), OsASA1, OASA1, OASA1(D323N), OASA1D,OsTDD1, ASB1, OASB1, OsASbeta1, ASbeta1, TDD1/OASB1
21402	11972021	Kaplinsky,N.J., Braun,D.M., Penterman,J., Goff,S.A. and Freeling,M.	Utility and distribution of conserved noncoding sequences in the grasses.	Proc. Natl. Acad. Sci. U.S.A.	99(9)	6147-6151	2002	_	lg1
21403	12434003	Kasai,K., Usami,S., Yamada,T., Endo,Y., Ochi,K. and Tozawa,Y.	A RelA-SpoT homolog (Cr-RSH) identified in Chlamydomonas reinhardtii generates stringent factor in vivo and localizes to chloroplasts in vitro.	Nucleic Acids Res.	30(22)	4985-4992	2002	RALYASE1	OsRALyase1, RALyase1,  OsFBX17, FBX17
21405	11328648	Kato,A., Fujita,S. and Komeda,Y.	Identification and characterization of the gene encoding the mitochondrial elongation factor G in rice.	DNA Seq.	11(5)	395-404	2000	_	mEF-G
21406	11913775	Kato,A., Fujita,S. and Komeda,Y.	Identification and characterization of two genes encoding the eukaryotic initiation factor 4A in rice.	DNA Seq.	12(5-6)	295-303	2001	EIF4A2,EIF4A1	eIF-4a, EIF4A, OseIF4A, eIF4A2, eIF4A-3, OsRH23,eIF-4a, EIF4A, OseIF4A, eIF4A1, elF-4A, eIF4A-1, OsRH4
21407	11697144	Kato,A., Nishi,R. and Ozaki,M.	Isolation and characterization of two genes encoding ubiquitin fused to a ribosomal protein of 53 amino acids in rice.	DNA Seq.	12(1)	53-58	2001	_,_,_	ZIURP1, Ub-CEP52-1,Ub-CEP52-2,S27a
21408	15078334	Kato,C., Mizutani,T., Tamaki,H., Kumagai,H., Kamiya,T., Hirobe,A., Fujisawa,Y., Kato,H. and Iwasaki,Y.	Characterization of heterotrimeric G protein complexes in rice plasma membrane	Plant J.	38(2)	320-331	2004	RGG1,RGG2,RGB1,D1	OsRGG1,OsRGG2,OsWD40-80, RGbeta1, OsRGB1,  OsDWD38, DWD38,d1, GPA1, GA1, OsGA1, RGA1, dwf1, XA7, RGA, D1/RGA1, D89, TGW5, OsTGW5, SRG5, OsSRG5
21409	8706734	Kato,H. and Minamikawa,T.	Identification and characterization of a rice cysteine endopeptidase that digests glutelin.	Eur. J. Biochem.	239(2)	310-316	1996	REP1,REP2	REP-1, OsREP-1, OsREP1, OsSAG12-1, SAG12-1, OsEnS-21,OsVPE3, VPE3, OsREP-2, REP-2alpha, REP-2beta, OsaLeg2, aLeg2
21410	10394640	Kato,H., Shintani,A. and Minamikawa,T.	The structure and organization of two cysteine endopeptidase genes from rice.	Plant Cell Physiol.	40(4)	462-467	1999		
21412	16028112	Kawabe,A., Matsunaga,S., Nakagawa,K., Kurihara,D., Yoneda,A., Hasezawa,S., Uchiyama,S. and Fukui,K.	Characterization of plant Aurora kinases during mitosis.	Plant Mol. Biol.	58(1)	1-13	2005	_,_	OsAUR1, AUR1,OsAUR2, AUR2
21413	1302636	Kawai,M., Kidou,S., Kato,A. and Uchimiya,H.	Molecular characterization of cDNA encoding for adenylate kinase of rice (Oryza sativa L.).	Plant J.	2(6)	845-854	1992	ADKB,ADKA	Adk-b,Adk-a, OsAdk-a, OsAK3, AK3
21414	10618494	Kawai,M., Pan,L., Reed,J.C. and Uchimiya,H.	Evolutionally conserved plant homologue of the Bax inhibitor-1 (BI-1) gene capable of suppressing Bax-induced cell death in yeast(1).	FEBS Lett.	464(3)	143-147	1999		
21415	8325505	Kawasaki,T., Hayashida,N., Baba,T., Shinozaki,K. and Shimada,H.	The gene encoding a calcium-dependent protein kinase located near the sbe1 gene encoding starch branching enzyme I is specifically expressed in developing rice seeds.	Gene	129(2)	183-189	1993	SPK	CDPK 1, CDPK1, CDPK23, OsCDPK23, OsCPK23, CPK23, OsSPK
21416	8455548	Kawasaki,T., Mizuno,K., Baba,T. and Shimada,H.	Molecular analysis of the gene encoding a rice starch branching enzyme.	Mol. Gen. Genet.	237(1-2)	10-16	1993	SBE1	sbe1, Rbe1. Sbe1, sbe1*(QEI), RBE1, BEI, SBE I, QEI, OsBEI, BE1, OsSBE1, OsSBEI, SBEI
21417	10485927	Kawasaki,T., Henmi,K., Ono,E., Hatakeyama,S., Iwano,M., Satoh,H. and Shimamoto,K.	The small GTP-binding protein rac is a regulator of cell death in plants.	Proc. Natl. Acad. Sci. U.S.A.	96(19)	10922-10926	1999	RAC1,RAC2,RAC3	OsRAC1, OsRac1, Os Rac1, Rac1, Os-Rac1,OsRAC2, OsRac2,OsRac3
21418	2717416	Kay,S.A., Keith,B., Shinozaki,K. and Chua,N.H.	The sequence of the rice phytochrome gene.	Nucleic Acids Res.	17(7)	2865-2866	1989	PHYA	phyA, PHYA* (phyA), PHYA*, Phya, PHY18, phy 18, OsPHYA 
21419	12782297	Kazama,T. and Toriyama,K.	A pentatricopeptide repeat-containing gene that promotes the processing of aberrant atp6 RNA of cytoplasmic male-sterile rice.	FEBS Lett.	544(1-3)	99-102	2003	RF1	Rf1 (Rf-1), rf-1, PPR791, PPR8-1, Rf-1, Rf1, Rf-1A, Rf5, Rf1a, RF5, Rf5(t)*(Rf(t)*), RF1A, PPR6, PLS31, OsPLS31
21420	9490748	Keller,T., Damude,H.G., Werner,D., Doerner,P., Dixon,R.A. and Lamb,C.	A plant homolog of the neutrophil NADPH oxidase gp91phox subunit gene encodes a plasma membrane protein with Ca2+ binding motifs.	Plant Cell	10(2)	255-266	1998	RBOHA	rbohA, OsrbohA, Os rbohA, OsRbohA, OsNox2, Nox2, OsRboh2, Rboh2
21421	1646373	Kemmerer,E.C., Lei,M. and Wu,R.	Isolation and molecular evolutionary analysis of a cytochrome c gene from Oryza sativa (rice)	Mol. Biol. Evol.	8(2)	212-226	1991	CC1	OsCc1, OsCc-1
21422	9484469	Kidou,S. and Ejiri,S.	Isolation, characterization and mRNA expression of four cDNAs encoding translation elongation factor 1A from rice (Oryza sativa L.).	Plant Mol. Biol.	36(1)	137-148	1998	RFA4,RFA3,RFA1,RFA2	rfa4*, REFA4, refa4, eEF-1a, OsEF-1a, OsEF1A, EF1A, eIF-1-alpha,rfa3*, REFA3, refa3, EF1a,rfa1*, REFA1, refa1, OseEF-1A, eEF-1A, Osef1a1,rfa2*, REFA2, refa2, OsEF1alpna, EF1alpna
21423	8405471	Kidou,S., Anai,T., Umeda,M., Aotsuka,S., Tsuge,T., Kato,A. and Uchimiya,H.	Molecular structure of ras-related small GTP-binding protein genes of rice plants and GTPase activities of gene products in Escherichia coli.	FEBS Lett.	332(3)	282-286	1993	_,GF14F	OsRab11D1, OsRab11, Rab11, ric2,GF14f, SR14-3-3, OsGF14f, S94, ric1, 14-3-3f
21424	7678761	Kidou,S., Umeda,M., Kato,A. and Uchimiya,H.	Isolation and characterization of a rice cDNA similar to the bovine brain-specific 14-3-3 protein gene.	Plant Mol. Biol.	21(1)	191-194	1993	GF14F	GF14f, SR14-3-3, OsGF14f, S94, ric1, 14-3-3f
21425	8493114	Kidou,S., Umeda,M., Kato,A. and Uchimiya,H.	Plant cDNA homologue to rat insulinoma gene encoding ribosomal protein S15.	Nucleic Acids Res.	21(8)	2013	1993	_	rig, RPS15, OsRPS15
21426	7703506	Kidou,S., Umeda,M. and Uchimiya,H.	Nucleotide sequence of rice (oryza sativa L.) cDNA homologous to cdc2 gene.	DNA Seq.	5(2)	125-129	1994	CDKB2;1 	Orysa;CDKB2;1, OsCDKB2;1, cdc2Os3, Oscdc20s-3, cdc20s-3, Orysa;CDKB;2, CYCB2.1, CDKB-2, OsCDKB-2
21427	7510136	Kidou,S., Umeda,M., Tsuge,T., Kato,A. and Uchimiya,H.	Isolation and characterization of a rice cDNA similar to the S-phase-specific cyc07 gene.	Plant Mol. Biol.	24(3)	545-547	1994	NAL21	cyc07, T151, OsNAL21, OsRPS3A, RPS3A, RPS3aA, OsRPS3aA
21428	9742959	Kidou,S., Tsukamoto,S., Kobayashi,S. and Ejiri,S.	Isolation and characterization of a rice cDNA encoding the gamma-subunit of translation elongation factor 1B (eEF1Bgamma).	FEBS Lett.	434(3)	382-386	1998	EEF1BG	eEF1Bgamma, EF-1gamma, OsEF1G1, EF1G1
21429	10080717	Kikuchi,H., Hirose,S., Toki,S., Akama,K. and Takaiwa,F.	Molecular characterization of a gene for alanine aminotransferase from rice (Oryza sativa).	Plant Mol. Biol.	39(1)	149-159	1999	ALAAT	alaAT, ALT-1, OsAlaAT1, AlaAT1
21430	10660065	Kikuchi,K., Ueguchi-Tanaka,M., Yoshida,K.T., Nagato,Y., Matsusoka,M. and Hirano,H.Y.	Molecular analysis of the NAC gene family in rice.	Mol. Gen. Genet.	262(6)	1047-1051	2000	NAC6,NAC8,NAC4,NAC7,TIL1,NAC3,NAC5,NAC1	OsNAC6, ONAC048, NAC48, SNAC2, SNAC2/OsNAC6, OsNAC6/ONAC048, OsSNAC2, SNAC-2, OsSNAC-2, OsNAC2,OsNAC8, ONAC074, ONAC74, NAC74, OsNAC8/ONAC074, OsNTL3, NTL3,OsNAC4, NAC68, ONAC068, OnNAC4*, OnNAC4, OsNAC4/ONAC068,OsNAC7, ONAC076, NAC76, OsNAC7/ONAC093, ONAC093, ONAC93, NAC93, DLN167, OsDLN167,NAC2, OsNAC2, ONAC004, ONAC4, ONAC034, ONAC34, ONAC058, ONAC58, OMTN2, Ostil1, OsNAC2/ONAC004, OsORE1.2, DLN113, OsDLN113,OsNAC3, NAC67, ONAC067, OnNAC3*, OsNAC3/ONAC067, DLN180, OsDLN180,OsNAC5, NAC71, ONAC071, ONAC009, ONAC9, ONAC020, ONAC20, OnNAC5*, OnNAC5, OsNAC5/ONAC009,OsNAC1, ONAC027, ONAC27, NAC27, OMTN1, OsNAC1/ONAC027, DLN60, OsDLN60, OsORE1
21431	12520303	Kikuchi,K., Terauchi,K., Wada,M. and Hirano,H.Y.	The plant MITE mPing is mobilized in anther culture.	Nature	421(6919)	167-170	2003	MPING,PING,_,_	mPing,Ping,A,B
21432	3481021	Kikuchi,S., Takaiwa,F. and Oono,K.	Variable copy number DNA sequences in rice.	Mol. Gen. Genet.	210(3)	373-380	1987	RPS7,RPS7,3'RPS12,RPS12	rps7,rps7,3'rps12, 3'-rps12, rps12,rps12
21433	9617819	Kim,C.Y., Gal,S.W., Choe,M.S., Jeong,S.Y., Lee,S.I., Cheong,Y.H., Lee,S.H., Choi,Y.J., Han,C.D., Kang,K.Y. and Cho,M.J.	A new class II rice chitinase, Rcht2, whose induction by fungal elicitor is abolished by protein phosphatase 1 and 2A inhibitor.	Plant Mol. Biol.	37(3)	523-534	1998	CHT8	Cht8, OsChia2a, Cht2, Rcht2, Chia2a, CHIT14, OsCHIT14, OsPR3
21434	7610191	Kim,H.U., Yun,C.H., Cho,W.S., Kang,S.K. and Chung,T.Y.	Nucleotide sequence of rice cDNA that encodes a ubiquitin protein and a 79-amino acid protein.	Plant Physiol.	108(2)	865	1995	_	S27a
21435	1731997	Kim,J.K. and Wu,R.	Nucleotide sequence of a high-pI rice (Oryza sativa) -amylase gene.	Plant Mol. Biol.	18(2)	399-402	1992	AMY1B	Amy1B*(RAmy1B), AMYC, RAmy1B, Amy2, Amy1B, Osamy-c, OSamy-c, OSamy--c 
21436	8219074	Kim,J.K. and Wu,R.	A rice (Oryza sativa L.) cDNA encodes a protein sequence homologous to the eukaryotic ribosomal 5S RNA-binding protein.	Plant Mol. Biol.	23(2)	409-413	1993	RPL5	rpl5, RL5, RPL18p/L5e, RPL18p, RPL5e, OsRPL5, OsRPL5e, OsRPL18p
21437	1375314	Kim,J.K., Cao,J. and Wu,R.	Regulation and interaction of multiple protein factors with the proximal promoter regions of a rice high pI alpha-amylase gene.	Mol. Gen. Genet.	232(3)	383-393	1992	AMY1B	Amy1B*(RAmy1B), AMYC, RAmy1B, Amy2, Amy1B, Osamy-c, OSamy-c, OSamy--c 
21438	14682618	Kim,K.N., Lee,J.S., Han,H., Choi,S.A., Go,S.J. and Yoon,I.S.	Isolation and characterization of a novel rice Ca2+-regulated protein kinase gene involved in responses to diverse signals including cold, light, cytokinins, sugars and salts.	Plant Mol. Biol.	52(6)	1191-1202	2003	CK1	OsCK1, CIPK31, OsCIPK31, Os-CIPK3, OsSnRK3.11, SnRK3.11
21439	11919636	Kim,M.C., Panstruga,R., Elliott,C., Muller,J., Devoto,A., Yoon,H.W., Park,H.C., Cho,M.J. and Schulze-Lefert,P.	Calmodulin interacts with MLO protein to regulate defence against mildew in barley.	Nature	416(6879)	447-451	2002	MLO_	OsMLO2, OsMLO3, OsMlo2, MLO2, Mlo2, Mlo, MLO3
21440	12423882	Kim,W.D., Kobayashi,O., Kaneko,S., Sakakibara,Y., Park,G.G., Kusakabe,I., Tanaka,H. and Kobayashi,H.	alpha-Galactosidase from cultured rice (Oryza sativa L. var. Nipponbare) cells.	Phytochemistry	61(6)	621-630	2002	_	alphaGa1, alpha-Gal I
21441	3360138	Kim,W.T. and Okita,T.W.	Nucleotide and primary sequence of a major rice prolamine.	FEBS Lett.	231(2)	308-310	1988	_	
21442	16666363	Kim,W.T. and Okita,T.W.	Structure, expression, and heterogeneity of the rice seed prolamines	Plant Physiol.	88(3)	649-655	1988	PROL	Prol*, Pro6
21443	10592042	Kim,W.Y., Kim,C.Y., Cheong,N.E., Choi,Y.O., Lee,K.O., Lee,S.H., Park,J.B., Nakano,A., Bahk,J.D., Cho,M.J. and Lee,S.Y.	Characterization of two fungal-elicitor-induced rice cDNAs encoding functional homologues of the rab-specific GDP-dissociation inhibitor.	Planta.	210(1)	143-149	1999	GDI1,GDI2	OsGDI1,OsGDI2, OsGDI3, GDI3
21444	7765038	Kim,Y., Baek,J., Park,H., Choi,Y. and Kim,S.	Isolation and characterization of the cDNA clones encoding class I chitinase in suspension cultures of rice cell	Biosci. Biotechnol. Biochem.	58(6)	1164-1166	1994	CHT1,CHT3	Cht1*(Chi1), Ch16, Cht1, CHT-1, CH16, RC24, OsChia1a, OsChia1, Chi1, Cht1*, Chi-1, Cht-1, Cht1, RCC1, OsCht-1, PR3, OsPR3,Cht3*, Cht3, Cht-3, CH6, OsChia1c, CHI7, OsCHI11, CHI11, OsPR3, PR3
21447		Kim,Y.H., Lee,M.C., Yun,D.W. and Eun,M.Y.	Nucleotide Sequences of cDNAs Encoding Three Types of Metaolothionein(MT)-like Protein (Accession Nos. AF017366, U77284, AF017365, AF009959 and AF001396) from Oryza sativa L. (PGR99-019)	Plant Physiol.	119(2)	805	1999	MTI2B,MT2B,MTI3A,MTI3B,MTI1A	OsMT2c, OsMT-I-2b, MT2c, MT-I-2b, MTc, met5, ricMT, OsMT2,OsMT2b, MT2b, OsMT-I-2c, MT-I-2c, MT2C, MT2BL, OsMT2C, OsMT2BL, MTE, OsMT2b1, OsMT2b2, MT2b1, MT2b2, MTb, met1, OsMTe, OsMT-I-2c, OsB22EL8, MTe, MT-I-2c, B22EL8,OsMT3a, MT3a, OsMT-I-3a, MT-I-3a, MTe, met2, OsMT3, MT3, OsMTI-3a, MTI-3a,MTd, OsMT-I-3b, OsMT3b, MT-I-3b, MT3b,MT1a, OsMT1a, OsMT1e, OsMT-I-1a, MT-I-1a, OsMT1e-P, MTa, rgMT, OsMT-1, rgMT-1
21448	7991693	Kim,Y.M., Kim,J.K. and Hwang,Y.S.	Isolation and characterization of a rice full-length cDNA clone encoding a polyubiquitin.	Plant Physiol.	106(2)	791-792	1994	RUBQ2	rubq2, rub1, Ubq1, Rubq1, UBQ10 
21449	10996242	Kimura,S., Ishibashi,T., Hatanaka,M., Sakakibara,Y., Hashimoto,J. and Sakaguchi,K.	Molecular cloning and characterization of a plant homologue of the origin recognition complex 1 (ORC1).	Plant Sci.	158(1-2)	33-39	2000	ORC1	OsORC1
21450	10798612	Kimura,S., Ueda,T., Hatanaka,M., Takenouchi,M., Hashimoto,J. and Sakaguchi,K.	Plant homologue of flap endonuclease-1: molecular cloning, characterization, and evidence of expression in meristematic tissues.	Plant Mol. Biol.	42(3)	415-427	2000	FEN1	OsFEN1, OsFEN-1a, FEN-1
21451	11917019	Kimura,S., Uchiyama,Y., Kasai,N., Saotome,A., Ueda,T., Ando,T., Ishibashi,T., Namekawa,S., Oshige,M., Furukawa,T., Yamamoto,T., Hashimoto,J. and Sakaguchi,K.	A novel DNA polymerase homologous to Escherichia coli DNA polymerase I from a higher plant, rice (Oryza sativa L.).	Nucleic Acids Res.	30(7)	1585-1592	2002	_	PolI-like, OsPoLP1, PoLP1, OsRpoLp, RpoLp
21452	14527718	Kimura,S., Furukawa,T., Kasai,N., Mori,Y., Kitamoto,H.K., Sugawara,F., Hashimoto,J. and Sakaguchi,K.	Functional characterization of two flap endonuclease-1 homologues in rice	Gene	314	63-71	2003	FEN1B,FEN1	OsFEN-1b,OsFEN1, OsFEN-1a, FEN-1
21453	15150342	Kimura,S., Tahira,Y., Ishibashi,T., Mori,Y., Mori,T., Hashimoto,J. and Sakaguchi,K.	DNA repair in higher plants; photoreactivation is the major DNA repair pathway in non-proliferating cells while excision repair (nucleotide excision repair and base excision repair) is active in proliferating cells.	Nucleic Acids Res.	32(9)	2760-2767	2004	FEN1,CSB,UVDDB1,ORC1,_,CPD,PCNA	OsFEN1, OsFEN-1a, FEN-1,OsCBS, CHR704, OsCHR704,UV-DDB1, OsUV-DDB1, OsUV-DDB, OsDDB1, DDB1,OsORC1,OsRPA32, RPA32, RPA2A ,qUVR-10, OsPHR, PHR, OsCPD,OsPCNA
21454	15541369	Kiribuchi,K., Sugimori,M., Takeda,M., Otani,T., Okada,K., Onodera,H., Ugaki,M., Tanaka,Y., Tomiyama-Akimoto,C., Yamaguchi,T., Minami,E., Shibuya,N., Omori,T., Nishiyama,M., Nojiri,H. and Yamane,H.	RERJ1, a jasmonic acid-responsive gene from rice, encodes a basic helix-loop-helix protein.	Biochem. Biophys. Res. Commun.	325(3)	857-863	2004	BHLH6	OsbHLH006, bHLH006, OsbHLH6, bHLH6, RERJ1, OsRERJ1, bHLH35
21456	15084714	Kobayashi,Y., Yamamoto,S., Minami,H., Kagaya,Y. and Hattori,T.	Differential activation of the rice sucrose nonfermenting1-related protein kinase2 family by hyperosmotic stress and abscisic Acid.	Plant Cell	16(5)	1163-1177	2004	SAPK5,SAPK8,SAPK6,SAPK4,SAPK2,SAPK7,SAPK10,SAPK1,SAPK3,SAPK9	OsSAPK5, OsSnRK2.5, SnRK2.5,OsSAPK8, OsSnRK2.8, SnRK2.8,OsSAPK6, OSRK1, OsSnRK2.6, SnRK2.6,OsSAPK4, OsSnRK2.4, SnRK2.4,OsSAPK2, OsSnRK2.2, SnRK2.2,OsSAPK7, OsSnRK2.7, SnRK2.7,OsSAPK10, OsSnRK2.10, SnRK2.10,OsSAPK1, OsSnRK2.1, SnRK2.1,OsSAPK3, REK, OsSnRK2.3, SnRK2.3,OsSAPK9, OsSnRK2.9, SnRK2.9
21458	9049269	Kodama,H., Akagi,H., Kusumi,K., Fujimura,T. and Iba,K.	Structure, chromosomal location and expression of a rice gene encoding the microsome omega-3 fatty acid desaturase.	Plant Mol. Biol.	33(3)	493-502	1997	FAD3,FADX,FADY	OsFAD3*, OsFAD3,OsFADX*, OsFADX,OsFADY*, OsFADY
21459	7788525	Koga-Ban,Y., Niki,T., Nagamura,Y., Sasaki,T. and Minobe,Y.	cDNA sequences of three kinds of beta-tubulins from rice.	DNA Res.	2(1)	21-26	1995	TUB7,TUB5,TUB4	OsTUB7, TUBB7, pTUB22,OsTUB5, TUBB5, OSTB-50, R2242,OsTUB4, TUBB4, OSTB-16, R1623, RTUB-1, Ostub16
21460		Kojima,S., Hanzawa,S., Hayakawa,T., Hayashi,M. and Yamaya,T.	Nucleotide sequence of a genomic DNA (Accession No. AB037664) and a cDNA (Accession No. AB037595) encoding cytosolic glutamine synthetase in Sasanishiki, a leading cultivar of rice in northern Japan (PGR00-048)	Plant Physiol.	122(4)	1459	2000	GLN1;1	OsGLN1;1, GS1, RGS28, OsGS1;1, GS1;1, OsGS, GS1, OsGS1, GLN1-1, OsGS1-1, GS1-1, GS1.1, OsGS1.1
21461	13130077	Komatsu,K., Maekawa,M., Ujiie,S., Satake,Y., Furutani,I., Okamoto,H., Shimamoto,K. and Kyozuka,J.	LAX and SPA: Major regulators of shoot branching in rice.	Proc. Natl. Acad. Sci. U.S.A.	100(20)	11765-11770	2003	SPA,LAX1	spa,lax, lax(lx), lx, OsbHLH123, bHLH123, OsLAX1, BOS1, OsBOS1
21462	12835399	Komatsu,M., Chujo,A., Nagato,Y., Shimamoto,K. and Kyozuka,J.	FRIZZY PANICLE is required to prevent the formation of axillary meristems and to establish floral meristem identity in rice spikelets.	Development	130(16)	3841-3850	2003	LHS1,FZP	OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO, OsLHS1, OsLG3b, LG3b, qLGY3, LGY3, DLN80, OsDLN80, OLR, OsOLR, GW3p6, OsGW3p6, OsMADS1GW3p6, MADS1GW3p6, qLGY3/OsLG3b/GW3p6,fzp*, fzp, OsBD1, BD1, OsERF#078, OsERF078, OsERF78, ERF78, AP2/EREBP#133, AP2/EREBP133, BFL1, SGDP7, OsSGDP7
21463	12897263	Komatsu,M., Shimamoto,K. and Kyozuka,J.	Two-step regulation and continuous retrotransposition of the rice LINE-type retrotransposon Karma.	Plant Cell	15(8)	1934-1944	2003	KARMA	Karma
21464	14731253	Komori,T., Ohta,S., Murai,N., Takakura,Y., Kuraya,Y., Suzuki,S., Hiei,Y., Imaseki,H. and Nitta,N.	Map-based cloning of a fertility restorer gene, Rf-1, in rice (Oryza sativa L.).	Plant J.	37(3)	315-325	2004	RF1,_,_,_	Rf1 (Rf-1), rf-1, PPR791, PPR8-1, Rf-1, Rf1, Rf-1A, Rf5, Rf1a, RF5, Rf5(t)*(Rf(t)*), RF1A, PPR6, PLS31, OsPLS31,PPR762, PPR4, PPR4-762,PPR683, PPR5, PPR5-683,PPR794, PPR6, PPR6-794, PPR5
21465	2806916	Kondo,H., Emori,Y., Abe,K., Suzuki,K. and Arai,S.	Cloning and sequence analysis of the genomic DNA fragment encoding oryzacystatin.	Gene	81(2)	259-265	1989	OC1	Oc1*, Oc1, OC-I, SPOC-I, OsCP1, Oc, OCI, OsCYS1, OsPR6b, PR6b
21466	1697595	Kondo,H., Abe,K., Nishimura,I., Watanabe,H., Emori,Y. and Arai,S.	Two distinct cystatin species in rice seeds with different specificities against cysteine proteinases. Molecular cloning, expression, and biochemical studies on oryzacystatin-II.	J. Biol. Chem.	265(26)	15832-15837	1990	OC2,OC1	Oc2*, Oc2, OC-II, OC-III, OCII, OsCYS2,Oc1*, Oc1, OC-I, SPOC-I, OsCP1, Oc, OCI, OsCYS1, OsPR6b, PR6b
21467	1993479	Kondo,H., Abe,K., Emori,Y. and Arai,S.	Gene organization of oryzacystatin-II, a new cystatin superfamily member of plant origin, is closely related to that of oryzacystatin-I but different from those of animal cystatins.	FEBS Lett.	278(1)	87-90	1991	OC2,OC1	Oc2*, Oc2, OC-II, OC-III, OCII, OsCYS2,Oc1*, Oc1, OC-I, SPOC-I, OsCP1, Oc, OCI, OsCYS1, OsPR6b, PR6b
21468	12669200	Kong,J., Gong,J.M., Zhang,Z.G., Zhang,J.S. and Chen,S.Y.	A new AOX homologous gene OsIM1 from rice ( Oryza sativa L.) with an alternative splicing mechanism under salt stress.	Theor. Appl. Genet.	107(2)	326-331	2003	IM1	OsIM1, OsIM1a, OsIM2, OsIM, PTOX1
21469	10625676	Kopriva,S., Koprivova,A. and Suss,K.H.	Identification, cloning, and properties of cytosolic D-ribulose-5-phosphate 3-epimerase from higher plants.	J. Biol. Chem.	275(2)	1294-1299	2000	_,_	RPE,
21470	9338963	Kosugi,S. and Ohashi,Y.	PCF1 and PCF2 specifically bind to cis elements in the rice proliferating cell nuclear antigen gene.	Plant Cell	9(9)	1607-1619	1997	PCF1,PCF2	OsPCF1,OsPCF2
21471	12000681	Kosugi,S. and Ohashi,Y.	DNA binding and dimerization specificity and potential targets for the TCP protein family.	Plant J.	30(3)	337-348	2002	PCF8,PCF7,PCF5,PCF3,PCF6	OsPCF8,OsPCF7,OsPCF5,OsPCF3,OsPCF6
21472	12060226	Kosugi,S. and Ohashi,Y.	E2F sites that can interact with E2F proteins cloned from rice are required for meristematic tissue-specific expression of rice and tobacco proliferating cell nuclear antigen promoters.	Plant J.	29(1)	45-59	2002	E2F2,E2F1	Orysa;E2F2, OsE2F2, DLN252, OsDLN252, OsE2Fa-2, E2Fa-2,Orysa;E2F1, OsE2F1, DLN58, OsDLN58, OsE2Fa-1, E2Fa-1
21473	10363365	Kouchi,H., Takane,K., So,R.B., Ladha,J.K. and Reddy,P.M.	Rice ENOD40: isolation and expression analysis in rice and transgenic soybean root nodules.	Plant J.	18(2)	121-129	1999	ENOD40,OBENOD40	OsENOD40,ObENOD40
21474		Koyama,H., Kihara,T., Takita,E. and Hara,T.	Isolation of Two cDNA Clones Encoding NADP-Specific Isocitrate Dehydrogenase from Rice (Accession Nos. AF155333 and AF155334). (PGR99-120)	Plant Physiol.	120(4)	1207	1999		
21475	8921376	Kraev,A., Chumakov,I. and Carafoli,E.	The organization of the human gene NCX1 encoding the sodium-calcium exchanger.	Genomics	37(1)	105-112	1996		
21476	8503935	Krishnan,H.B. and Pueppke,S.G.	Nucleotide sequence of an abundant rice seed globulin: homology with the high molecular weight glutelins of wheat, rye and triticale.	Biochem. Biophys. Res. Commun.	193(1)	460-466	1993	GLB1	glb1(t)*, glb1(t), glb1, alpha-Glb, Glb-1, OsGlb1, Glb1, Glb, OsEnS-77
21477	9520275	Kubis,S.E., Heslop-Harrison,J.S., Desel,C. and Schmidt,T.	The genomic organization of non-LTR retrotransposons (LINEs) from three Beta species and five other angiosperms.	Plant Mol. Biol.	36(6)	821-831	1998	_,_	,
21478	10430921	Kubo,N., Harada,K., Hirai,A. and Kadowaki,K.	A single nuclear transcript encoding mitochondrial RPS14 and SDHB of rice is processed by alternative splicing: common use of the same mitochondrial targeting signal for different proteins.	Proc. Natl. Acad. Sci. U.S.A.	96(16)	9207-9211	1999	LPS1,_	SDH2, SDHB, sdhB, RPS14, rps14, sdh2-1, SDH2-RPS14, OsLPS1, OsSDH2-1 ,rpl5, rpl5-1
21479	10852496	Kubo,N., Jordana,X., Ozawa,K., Zanlungo,S., Harada,K., Sasaki,T. and Kadowaki,K.	Transfer of the mitochondrial rps10 gene to the nucleus in rice: acquisition of the 5' untranslated region followed by gene duplication.	Mol. Gen. Genet.	263(4)	733-739	2000	RPS10	rps10
21480	11418240	Kubo,N., Takano,M., Nishiguchi,M. and Kadowaki,K.	Mitochondrial sequence migrated downstream to a nuclear V-ATPase B gene is transcribed but non-functional.	Gene	271(2)	193-201	2001	_,VHA-B	,OsVHA-B, VHA-B1, OsVHA-B1
21481	2258052	Kumagai,M.H., Shah,M., Terashima,M., Vrkljan,Z., Whitaker,J.R. and Rodriguez,R.L.	Expression and secretion of rice alpha-amylase by Saccharomyces cerevisiae.	Gene	94(2)	209-216	1990	_	
21483	10791026	Kumekawa,N., Ohtsubo,E. and Ohtsubo,H.	Identification and phylogenetic analysis of gypsy-type retrotransposons in the plant kingdom.	Genes Genet. Syst.	74(6)	299-307	1999	RIRE2,RIRE8,RIRE3	RIRE2, Osr26, Rire2, Retrosat2,RIRE8, Osr33, Rire8,RIRE3
21484	9928939	Kumekawa,N., Ohtsubo,H., Horiuchi,T. and Ohtsubo,E.	Identification and characterization of novel retrotransposons of the gypsy type in rice.	Mol. Gen. Genet.	260(6)	593-602	1999	RIRES,RIRE8B,RIRE8A,RIRE8,RIRE3	RIRES,RIRE8B,RIRE8A,RIRE8, Osr33, Rire8,RIRE3
21485	11405631	Kumekawa,N., Ohmido,N., Fukui,K., Ohtsubo,E. and Ohtsubo,H.	A new gypsy-type retrotransposon, RIRE7: preferential insertion into the tandem repeat sequence TrsD in pericentromeric heterochromatin regions of rice chromosomes.	Molecular Genetics & Genomics (Molecular General Genetics up to 2001)	265(3)	480-488	2001	RIRE7	RIRE7, Osr31, Rire7
21486	15215504	Kurusu,T., Sakurai,Y., Miyao,A., Hirochika,H. and Kuchitsu,K.	Identification of a Putative Voltage-Gated Ca(2+)-permeable Channel (OsTPC1) Involved in Ca(2+) Influx and Regulation of Growth and Development in Rice.	Plant Cell Physiol.	45(6)	693-702	2004	TPC1	OsTPC1, Tpc1, OsCC1, OsCL1 pore
21487	12782736	Kusaba,M., Miyahara,K., Iida,S., Fukuoka,H., Takano,T., Sassa,H., Nishimura,M. and Nishio,T.	Low glutelin content1: a dominant mutation that suppresses the glutelin multigene family via RNA silencing in rice.	Plant Cell	15(6)	1455-1467	2003	GLUB5,LGC1,GLUB4	GluB5, GLU2.3 ,Lgc1 (LGC-1), Lgc1, LGC-1, glu1(t)*(Lgc1), glu1(t)*, glu8, Glu1,GluB4, GluB-4, GluB-5, GluB5, GluB-4/5
21488		Kusaka,M., Kurashige,M., Hirai,A. and Tsutsumi,N.	Characterization of two rice genes for nuclear-encoded chloroplast ribosomal protein L12 and phylogenetic analysis of the acquisition of transit peptides and gene duplication	Theor. Appl. Genet.	97(1-2)	110-115	1998	RPL12-1,AL1	rpl12-1,RPL12-2, rpl12-2, CL12, OsRPL12-2, L12/AL1, OsAL1
21489	15654622	Kusano,H., Asano,T., Shimada,H. and Kadowaki,K.	Molecular characterization of ONAC300, a novel NAC gene specifically expressed at early stages in various developing tissues of rice.	Molecular Genetics & Genomics (Molecular General Genetics up to 2001)	272(6)	616-626	2005	ONAC300	ONAC077, NAC77, OsNAC77, NAC300, OsNAC300, ONAC132, NAC132, OsNAC132, DLN250, OsDLN250
21490	1531030	Kusano,T., Aguan,K., Abe,M. and Sugawara,K.	Nucleotide sequence of a rice rab16 homologue gene.	Plant Mol. Biol.	18(1)	127-129	1992	LEA22	OsLEA22, RAB25, OsRab16, Rab16, OsABA45, ABA45
21491	1363521	Kwon,S.T., Kikuchi,S. and Oono,K.	Molecular cloning and characterization of gravity specific cDNA in rice (Oryza sativa L.) suspension callus.	Jpn. J. Genet.	67(4)	335-348	1992	_,ALDC2	GSC 381, OsLEA6,GSC 233, AldC-2, OsAldC-2, OsFBA, FBA
21492	8278540	Kyozuka,J., McElroy,D., Hayakawa,T., Xie,Y., Wu,R. and Shimamoto,K.	Light-regulated and cell-specific expression of tomato rbcS-gusA and rice rbcS-gusA fusion genes in transgenic rice.	Plant Physiol.	102(3)	991-1000	1993	RBCS	rbcS, OsRbcS, RBCS-C, RbcS2, OsRBCS2, RbcS1, OsRbcS2, OsrbcS1
21493	9482818	Kyozuka,J., Konishi,S., Nemoto,K., Izawa,T. and Shimamoto,K.	Down-regulation of RFL, the FLO/LFY homolog of rice, accompanied with panicle branch initiation.	Proc. Natl. Acad. Sci. U.S.A.	95(5)	1979-1982	1998	RFL	RFL, OSL, FL, APO2, APO2/RFL, SSC, SSC/RFL/APO2, OsRFL, OsFL, OsAPO2, OsSSC
21494	10945340	Kyozuka,J., Kobayashi,T., Morita,M. and Shimamoto,K.	Spatially and temporally regulated expression of rice MADS bos genes with similarity to Arabidopsis class A, B, C genes	Plant Cell Physiol.	41(6)	710-718	2000	MADS2,RAP1A,RAP1B,RAG	OsMADS2, RMADS219, NMADS1, PI2, nmads1, DLN33, OsDLN33,OsMADS15, FDRMADS3, RMADS215, MADS15, DEP,MADS14, OsMADS14, FDRMADS6, RMADS211, AGL10,MADS3, OsMADS3, OsMADS3(t), RMADS222, RAG1, rf3
21495	10394942	LaFayette,P.R., Eriksson,K.E. and Dean,J.F.	Characterization and heterologous expression of laccase cDNAs from xylem tissues of yellow-poplar (Liriodendron tulipifera).	Plant Mol. Biol.	40(1)	23-35	1999	LAC4	Oslacc, lacc, OsLAC4, OsLAC17, LAC17
21496	9119407	Lapenta,V., Chiurazzi,P., P., Pizzuti,A., Hanaoka,F. and Brahe,C.	SMT3A, a human homologue of the S. cerevisiae SMT3 gene, maps to chromosome 21qter and defines a novel gene family.	Genomics	40(2)	362-366	1997	SUMO1	smt3, SMT3, OsSUMO1
21497	10480395	Larkin,P.D. and Park,W.D.	Transcript accumulation and utilization of alternate and non-consensus splice sites in rice granule-bound starch synthase are temperature-sensitive and controlled by a single-nucleotide polymorphism.	Plant Mol. Biol.	40(4)	719-727	1999	WX1	wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx
21498	2541432	Lawton,M.A., Yamamoto,R.T., Hanks,S.K. and Lamb,C.J.	Molecular cloning of plant transcripts encoding protein kinase homologs.	Proc. Natl. Acad. Sci. U.S.A.	86(9)	3140-3144	1989	AGC13	G11A, OsAGC13
21499	10717479	Lee,B.H., Won,S.H., Lee,H.S., Miyao,M., Chung,W.I., Kim,I.J. and Jo,J.	Expression of the chloroplast-localized small heat shock protein by oxidative stress in rice.	Gene	245(2)	283-290	2000	HSP26	OsHSP26, Oshsp26, OsHSP26.7, HSP26.7
21500	9375784	Lee,J.H., Chae,H.S., Lee,J.H., Hwang,B., Hahn,K.W., Kang,B.G. and Kim,W.T.	Structure and expression of two cDNAs encoding S-adenosyl-L-methionine synthetase of rice (Oryza sativa L.).	Biochim. Biophys. Acta	1354(1)	13-18	1997	SAMS1,SAMS2	OsSAMS1, OS-SAMS1, OsSAMS, SAM, SAMS,OsSAM2, SAM2, OsSAMS2, OS-SAMS2
21501	10597036	Lee,J.H., Lee,J.W., Chung,Y.Y., Paek,K.H., Shin,J.S., Yun,C.H. and Kim,J.K.	Cloning and characterization of the chloroplast elongation factor EF-Tu cDNA of Oryza sativa L.	Mol. Cells	9(5)	484-490	1999	EFTU	tufA, EF-Tu
21502	16240176	Lee,J.H., Cho,Y.S., Yoon,H.S., Suh,M.C., Moon,J., Lee,I., Weigel,D., Yun,C.H. and Kim,J.K.	Conservation and Divergence of FCA Function between Arabidopsis and Rice.	Plant Mol. Biol.	58(6)	823-838	2005	FCA	OsFCA, OsFCA-1, OsFCA-2, OsFCA-3, OsFCA-4, OsFCA-gamma
21504	10409053	Lee,M.C., Kim,Y.H., Yun,D.W., Ma,B.C., Nahm,B.H. and Eun,M.Y.	Cloning and Sequence Analysis of cDNAs Encoding Lipid-Transfer Proteins (Accession Nos. Y08691, AF017358, AF017359, AF017360, and AF017361) from Rice (PGR 99-061)	Plant Physiol.	120(1)	339	1999	_,LTP1,_	,Ltp1, RLTP1,OsLTP1.18, OsLTP1, nsLTP1, a15, OsLtpI.18, LTPC2, OsLTPC2
21506	11310740	Lee,M.W., Qi,M. and Yang,Y.	A novel jasmonic acid-inducible rice myb gene associates with fungal infection and host cell death.	Mol. Plant Microbe Interact.	14(4)	527-535	2001	GAMYB,_,SH11,MYB1,_,C,CSA2,PR10A,MYB2,_,MYB10,MYB12,GL1D,MYB11,MYB9	OsGAMYB, GAM1, OsGAMyb, Os-MYBGA, Os GAMYB, OsMYBGA, MYBGA, Os2R_MYB15, 2R_MYB15 ,OsMYB4, Osmyb4, OsMyb4, MYB4, OsMYB55, MYB55, OsMyb8, MYB8, OsMYB13b, MYB13b, OsMYB15, MYB15, Os2R_MYB46, 2R_MYB46,OsJAmyb, JAmyb, OsJAMyb, OsMYB21, MYB21, Os2R_MYB91, 2R_MYB91, OgSH11, OsSH11,OsMyb1, OSMYB1, R2R3-MYB, OsDLN141, DLN141, Os2R_MYB55, 2R_MYB55 ,OsMyb4, OSMYB4, MYB4, OsEnS-11, OsGL1C, GL1C, OsMYB13, MYB13, Os2R_MYB11, 2R_MYB11 ,C, Cp, OsC1, Os-C1, C1, OsMyb6, Myb6, OsPL6, PL6, OsGL1E, GL1E, Os2R_MYB63, 2R_MYB63, OsC1PLSr, C1PLSr,OsCSA2, MYB5, OsMyb5, OSMYB5, Os2R_MYB58, 2R_MYB58,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsMyb2, OSMYB2,OsMyb7, Myb7, OsMYB102, MYB102, Os2R_MYB71, 2R_MYB71,OsMyb10, Os2R_MYB82, 2R_MYB82,OsMyb12, Os2R_MYB89, 2R_MYB89 ,OsMyb3, OSMYB3, MYB3, OsGL1D, OsMYB46, MYB46, Kala3, OsKala3, SMG3, OsSMG3, Os2R_MYB39, 2R_MYB39,OsMyb11, Myb11, OsMYB60, MYB60, Os2R_MYB93, 2R_MYB93 ,OsMyb9, OsMyb8, OsMYB110, Myb9, Myb8, MYB110, Os2R_MYB87, 2R_MYB87
21507	11432928	Lee,R.H., Wang,C.H., Huang,L.T. and Chen,S.C.	Leaf senescence in rice plants: cloning and characterization of senescence up-regulated genes.	J. Exp. Bot.	52(358)	1117-1121	2001	AMTR1,_,_,_,BCKDH,MCCA,HPPD,_,BURP16,GABA-T,AGA1,KAT1,SALT,ICL	Osh36, OsH36, H36, OsAMTR1,OsFbox178, Os_F0705,  OsFBX113, FBX113,,Oryzasin,OsBCKDH,OsL55, OsMCCA,OsHPPD, Osl30, l30,OsUXS2, UXS-2, Osl381, l381,OsRD22, RD22, OsBURP16,Osl2, l2, OsGABA-T,Osh69, h69, OsAGA1, OsRS6, RS6,OsI57, I57, OsKAT1, OsACAA1, ACAA1,salT*(sal1), SalT1*, sal1, Sal1, SALT, ML, SalT, OsSalT, OsJRL, JRL, Osl43, OsL43, OsMBL1, MBL1, OsJRL01, JRL01, OsJRL1, JRL1,OsEnS-107, EnS-107, OsI85, I85, OsICL, Osl85, l43, Osl43, OsL85
21508	15604681	Lee,R.H., Lin,M.C. and Chen,S.C.	A novel alkaline alpha-galactosidase gene is involved in rice leaf senescence.	Plant Mol. Biol.	55(2)	281-295	2004	OSH69	Osh69
21509	14701936	Lee,S., Kim,J., Son,J.S., Nam,J., Jeong,D.H., Lee,K., Jang,S., Yoo,J., Lee,J., Lee,D.Y., Kang,H.G. and An,G.	Systematic Reverse Genetic Screening of T-DNA Tagged Genes in Rice for Functional Genomic Analyses: MADS-box Genes as a Test Case.	Plant Cell Physiol.	44(12)	1403-1411	2003	MADS4,MADS24,MADS22,MADS35,MADS18,MADS36,RAP1B,MADS30,LHS1,MADS20,MADS33,MADS56,FST ,CFO1,MADS21,MADS25,MADS31,MADS47,RAP1A,MADS5,PAP2,MADS26,MADS57,MADS23,MFO1,MADS55,MADS13,MADS7,MADS2,MADS50,MADS27,COG1	OsMADS4, PI1, DLN140, OsDLN140,OsMADS24, MADS8, OsMADS8, OsMADS8/24 ,OsMADS22, RMD1, DLN68, OsDLN68,OsMADS35,OsMADS18, MADS2, OsMADS2, MADS28, OsMADS28, FDRMADS7, OsMADS18/28,OsMADS36,MADS14, OsMADS14, FDRMADS6, RMADS211, AGL10,OsMADS30,OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO, OsLHS1, OsLG3b, LG3b, qLGY3, LGY3, DLN80, OsDLN80, OLR, OsOLR, GW3p6, OsGW3p6, OsMADS1GW3p6, MADS1GW3p6, qLGY3/OsLG3b/GW3p6,OsMADS20,OsMADS33,OsMADS56, FDRMADS8, RMADS214,OsMADS29, MADS29, OsFST,OsMADS32, MADS32, OsCFO1, CFO1/OsMADS32, TRI1, OsTRI1 , OsMADS32/CFO, CFO, OsCFO,OsMADS21, RMADS207,OsMADS25,OsMADS31,OsMADS47, OsMDP1, MDP, MDP1,OsMADS15, FDRMADS3, RMADS215, MADS15, DEP,OsMADS5, FDRMADS2,MADS34, OsMADS34, RMADS212/RMADS217/RMADS221, OsPAP2/MADS34, MADS34/PAP2, PAP2/OsMADS34, OsMADS34/PAP2, OsMADS19,OsMADS26, FDRMADS3, RMADS220,OsMADS57, MADS-57,OsMADS23, MADS-23,OsMADS6, MADS6, OsMFO1,OsMADS55, DLN163, OsDLN163,OsMADS13, MAF1, RMADS206,OsMADS7, OsMADS45, FDRMADS1, RMADS216, AGL6, M79, MADS45, Os MADS7, Os MADS45, OsMADS7/45,OsMADS2, RMADS219, NMADS1, PI2, nmads1, DLN33, OsDLN33,OsMADS50, AGL20, SOC1, OsSOC1, RMADS208, OsSOC1/ OsMADS50/DTH3, DTH3, OsDTH3,OsMADS27, MADS-27a, OsSTA66, OsMADS27a,OsMADS17, MADS17, NMADS3, RMADS213, nmads3
21510	11598238	Lee,Y. and Kende,H.	Expression of beta-expansins is correlated with internodal elongation in deepwater rice.	Plant Physiol.	127(2)	645-654	2001	EXPB6,EXPB13,EXPB14,EXPB12,EXPB9,EXPB10,EXPB1B,EXPB4,EXPB2,EXPB8,EXPB11,EXPB7,EXPB3,EXPB1A,EXPB5	OsEXPB6, osaEXPb1.8, EXPb1.8,OsEXPB13, osaEXPb1.4p,OsEXPB14, osaEXPb1.18,,OsEXPB9, osaEXPb1.6,OsEXPB10, osaEXPb1.5,OsEXPB1, EXPB1b, OsaEXPb1.3, Ory s I, EXPB1.1,OsEXPB4, OsaEXPb1.7, EXPb1.7,OsEXPB2, OsaEXPb1.9, EXPb1.9,,OsEXPB11, osaEXPb1.20,OsEXPB7, osaEXPb1.12,OsEXPB3, osaEXPb1.10, EXPb1.10,OsEXPB1, EXPB1a, OsaEXPb1.2, Ory s I, EXPB1.1, Ory s 1,OsEXPB5, osaEXPb1.19
21511	12428004	Lee,Y. and Kende,H.	Expression of alpha-Expansin and Expansin-Like Genes in Deepwater Rice.	Plant Physiol.	130(3)	1396-1405	2002	EXPA3,EXPA4,EXPA13,EXPA21,EXPA2,EXPA23,EXPL2,EXPA18,EXPL1,EXPA1,EXPA14,EXPA19,EXPA12,EXPA7,EXPA11,EXPA24,EXPA25,EXPA9,EXPA17,EXPA10,EXPA8,EXPL3,EXPR1,EXPA6,EXPA26,EXPA5,EXPA20,EXPA22,EXPA16,EXPA15	OsEXP3 (Os-EXP3), EXPA3, OsEXP3, Os-EXP3, OsaEXPa1.18, RiExD, Os-EXPA3, OsEXPA3,OsEXP4 (Os-EXP4), OsEXPA4, OsEXP4, Os-EXP4, OsaEXPa1.22,OsEXPA13, OsEXP13, osaEXPa1.13,OsEXPA21, OsEXP21, osaEXPa1.21,OsEXP2, OsEXP2(Os-EXP2), Os-EXP2, EXPA2, OsEXPA2, OsaEXPa1.23, RiExB, RiExC, Os-EXPA2,OsEXPA23, OsEXP23, osaEXPa1.12,Os-EXPL2, OsEXPL2,OsEXPA18, OsEXP18, osaEXPa1.3,OsEXPLA1, EXPLA1, OsRIP3, RIP3, Os-EXPL1, OsEXPL1,OsEXP1, EXPA1, OsEXPA1, OsaEXPa1.16, RiExA,OsEXPA14, OsEXP14, osaEXPa1.11,OsEXPA19, OsEXP19, osaEXPa1.2,OsEXPA12, OsEXP12, osaEXPa1.15,OsEXPA7, EXP7, OsEXP7, OsaEXPa1.26,OsEXPA11, OsEXP11, osaEXPa1.25,OsEXPA24, OsEXP24, osaEXPa1.10,OsEXPA25, OsEXP25, osaEXPa1.6,OsEXPA9, OsEXP9, osaEXPa1.19,OsEXPA17, OsEXP17, osaEXPa1.31,OsEXPA10, OsEXP10, osaEXPa1.28,,,Os-EXPR1, OsEXPR1,OsEXPA6, OsEXP6, osaEXPa1.24,EXPA26, OsEXP26, osaEXPa1.29,OsEXPA5, OsEXP5, osaEXPa1.20,OsEXPA20, OsEXP20, osaEXPa1.1,OsEXPA22, OsEXP22, osaEXPa1.9,OsEXPA16, OsEXP16, osaEXPa1.27,OsEXPA15, OsEXP15, osaEXPa1.8
21512	11641069	Lee,Y., Choi,D. and Kende,H.	Expansins: ever-expanding numbers and functions.	Curr. Opin. Plant Biol.	4(6)	527-532	2001	EXPA10,EXPA1,EXPA3,EXPA8,EXPA5,EXPB12,EXPB9,EXPB10,EXPB13,EXPB14,EXPA14,EXPA19,EXPA21,EXPA23,EXPB1A,EXPA12,EXPA11,EXPA13,EXPA24,EXPA9,EXPA17,EXPA2,EXPA26,EXPA22,EXPA16,EXPA15,EXPA20,EXPB1B,EXPA25,EXPB4,EXPB11,EXPA6,EXPB7,EXPA18,EXPA7,EXPB6,EXPA4,EXPB3,EXPB2,EXPB5	OsEXPA10, OsEXP10, osaEXPa1.28,OsEXP1, EXPA1, OsEXPA1, OsaEXPa1.16, RiExA,OsEXP3 (Os-EXP3), EXPA3, OsEXP3, Os-EXP3, OsaEXPa1.18, RiExD, Os-EXPA3, OsEXPA3,OsEXPA8, OsEXP8, osaEXPa1.17,OsEXPA5, OsEXP5, osaEXPa1.20,OsEXPB12, OsaEXPb1.17,OsEXPB9, osaEXPb1.6,OsEXPB10, osaEXPb1.5,OsEXPB13, osaEXPb1.4p,OsEXPB14, osaEXPb1.18,OsEXPA14, OsEXP14, osaEXPa1.11,OsEXPA19, OsEXP19, osaEXPa1.2,OsEXPA21, OsEXP21, osaEXPa1.21,OsEXPA23, OsEXP23, osaEXPa1.12,OsEXPB1, EXPB1a, OsaEXPb1.2, Ory s I, EXPB1.1, Ory s 1,OsEXPA12, OsEXP12, osaEXPa1.15,OsEXPA11, OsEXP11, osaEXPa1.25,OsEXPA13, OsEXP13, osaEXPa1.13,OsEXPA24, OsEXP24, osaEXPa1.10,OsEXPA9, OsEXP9, osaEXPa1.19,OsEXPA17, OsEXP17, osaEXPa1.31,OsEXP2, OsEXP2(Os-EXP2), Os-EXP2, EXPA2, OsEXPA2, OsaEXPa1.23, RiExB, RiExC, Os-EXPA2,EXPA26, OsEXP26, osaEXPa1.29,OsEXPA22, OsEXP22, osaEXPa1.9,OsEXPA16, OsEXP16, osaEXPa1.27,OsEXPA15, OsEXP15, osaEXPa1.8,OsEXPA20, OsEXP20, osaEXPa1.1,OsEXPB1, EXPB1b, OsaEXPb1.3, Ory s I, EXPB1.1,OsEXPA25, OsEXP25, osaEXPa1.6,OsEXPB4, OsaEXPb1.7, EXPb1.7,OsEXPB11, osaEXPb1.20,OsEXPA6, OsEXP6, osaEXPa1.24,OsEXPB7, osaEXPb1.12,OsEXPA18, OsEXP18, osaEXPa1.3,OsEXPA7, EXP7, OsEXP7, OsaEXPa1.26,OsEXPB6, osaEXPb1.8, EXPb1.8,OsEXP4 (Os-EXP4), OsEXPA4, OsEXP4, Os-EXP4, OsaEXPa1.22,OsEXPB3, osaEXPb1.10, EXPb1.10,OsEXPB2, OsaEXPb1.9, EXPb1.9,OsEXPB5, osaEXPb1.19
21513	10898978	Lee,Y.R. and Liu,B.	Identification of a phragmoplast-associated kinesin-related protein in higher plants.	Curr. Biol.	10(13)	797-800	2000	_	PAKRP1, OsKRP1, SIP18 
21514		Lei,H., Zhou,B., Han,B. and Hong,G.	A S-locus receptor-like kinase cluster is revealed in a 108kb fragment of rice	Gene			2002		
21515	1716496	Lei,M. and Wu,R.	A novel glycine-rich cell wall protein gene in rice.	Plant Mol. Biol.	16(2)	187-198	1991	_	Osgrp-1
21516	9419382	Leister,D., Kurth,J., Laurie,D.A., Yano,M., Sasaki,T., Devos,K., Graner,A. and Schulze-Lefert,P.	Rapid reorganization of resistance gene homologues in cereal genomes.	Proc. Natl. Acad. Sci. U.S.A.	95(1)	370-375	1998	_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_	r2,r5,r1,r6,r11,r12,r7,r15,r16,r3,r4,r8,r9,r10,r13,r14
21517	15604706	Leonard,R., Kolarich,D., Paschinger,K., Altmann,F. and Wilson,I.	A genetic and structural analysis of the -glycosylation capabilities	Plant Mol. Biol.	55(5)	631-644	2004	FUCTA,GLCNACTI,RCN11	OsFUT11, FUT11, FucTA, OsFucTA, OsFucT, FucT, "alpha1,3-FucT",GlcNAc-TI, OsGlcNAc-TI, GnTI, OsGnTI,Xyl, OsXylT, XylT, RCN11/OsXylT, "beta1,2-XylT"
21520		Li,J., Liang,C.Y., Yang,J.L., Xing,Q.H., Yang,D.E., Deng,Q.Y., Weng,M.L. and Wang,B.	Cloning of the APRT gene from rice and analysis of its association with TGMS	Acta Bot. Sin.	45(11)	1319-1328	2003	APT2	OsAPT2, APRT, OsAPRT
21521	10725557	Li,L., Li,S., Tao,Y. and Kitagawa,Y.	Molecular cloning of a novel water channel from rice: its products expression in Xenopus oocytes and involvement in chilling tolerance.	Plant Sci.	154(1)	43-51	2000	PIP1A	OsPIP1a, OsPIP1;1, PIP1a, RWC-1, PIP1-1, RWC1, OsPIP1-1, PIP1;1, PIP1-5
21523	10978528	Li,W.J., Feng,H., Fan,J.H., Zhang,R.Q., Zhao,N.M. and Liu,J.Y.	Molecular cloning and expression of a phospholipid hydroperoxide glutathione peroxidase homolog in Oryza sativa.	Biochim. Biophys. Acta	1493(1-2)	225-230	2000	PHGPX	OsGpx2, GPX2, OsGPx02, PHGPX, ricPHGPX, riPHGPX 
21524	12687001	Li,X., Qian,Q., Fu,Z., Wang,Y., Xiong,G., Zeng,D., Wang,X., Liu,X., Teng,S., Hiroshi,F., Yuan,M., Luo,D., Han,B. and Li,J.	Control of tillering in rice.	Nature	422(6932)	618-621	2003	MOC1	moc1, OsMOC1, OsGRAS-33, OsGRAS33, GRAS-33, GRAS33, GNP6, OsGNP6
21525	10831839	Li,Y., Nakazono,M., Tsutsumi,N. and Hirai,A.	Molecular and cellular characterizations of a cDNA clone encoding a novel isozyme of aldehyde dehydrogenase from rice.	Gene	249(1-2)	67-74	2000	ALDH2A,ALDH1A	OsALDH2a, ALDH2a, Aldh2a, OsSTA73, OsALDH2B5, ALDH2B5  ,ALDH1a, Aldh1a, OsALDH1a, OsALDH2C4, ALDH2C4 
21526	12953108	Li,Y., Qian,Q., Zhou,Y., Yan,M., Sun,L., Zhang,M., Fu,Z., Wang,Y., Han,B., Pang,X., Chen,M. and Li,J.	BRITTLE CULM1, Which Encodes a COBRA-Like Protein, Affects the Mechanical Properties of Rice Plants	Plant Cell	15(9)	2020-2031	2003	BC1	bc1, bc-1, OsBC1, CWA1, FP1, OsPCS3, PCS3
21527	10651810	Li,Z. and Komatsu,S.	Molecular cloning and characterization of calreticulin, a calcium-binding protein involved in the regeneration of rice cultured suspension cells.	Eur. J. Biochem.	267(3)	737-745	2000	CRO1	OsCRO1, CRT, CRT-1, OsCRT-1, OsCRT1, CRT1
21528		Li,Z.-Y. and Chen,S.-Y.	Inducible expression of translation elongation factor 1A gene in rice seedlings in response to environmental stresses	Acta Bot. Sin.	41	800-806	1999	_,RFA3,RFA1,RFA2,RFA4	REF1A,rfa3*, REFA3, refa3, EF1a,rfa1*, REFA1, refa1, OseEF-1A, eEF-1A, Osef1a1,rfa2*, REFA2, refa2, OsEF1alpna, EF1alpna,rfa4*, REFA4, refa4, eEF-1a, OsEF-1a, OsEF1A, EF1A, eIF-1-alpha
21529		Li,Z.Y. and Chen,S.Y.	Molecular cloning, chromosomal mapping and expression analysis of disease resistance gene homologues in rice (Oryza sativa L.)	Chin. Sci. Bull.	44	1202-1207	1999	_,_,_,_	Osr1A,Osr1B,Osr2,Osr3
21530		Li,Z.Y. and Chen,S.Y.	Differential accumulation of S-adenosylmethionine decarboxylase transcript in rice seedlings in response to salt and drought stresses	Theor. Appl. Genet.	100(5)	782-788	2000	SAMDC	SamDC, AdoMetDC, AdoMetDC1, OsSAMDC1
21531		Li,Z.Y. and Chen,S.Y.	Isolation, characterization and chromosomal location of a novel zinc-finger protein gene that is down-regulated by salt stress	Theor. Appl. Genet.	102(2-3)	363-368	2001	_	OsZFP1, SRZ3
21532	10791831	Li,Z.Y., Chen,S.Y., Zheng,X.W. and Zhu,L.H.	Identification and chromosomal localization of a transcriptionally active retrotransposon of Ty3-gypsy type in rice.	Genome	43(2)	404-408	2000	RIRE9	RIRE9, Osr27, Rire9
21533	12136108	Liang,D., Zhou,H., Zhang,P., Chen,Y.Q., Chen,X., Chen,C.L. and Qu,L.H.	A novel gene organization: intronic snoRNA gene clusters from Oryza sativa.	Nucleic Acids Res.	30(14)	3262-3272	2002	_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_	Z100b,Z100c,Z100d,Z101,Z102,Z103h,Z103b,Z103a,Z103c,Z103d,Z103f,Z103g,Z104a,Z104b,Z105,Z103e,Z106,Z107,Z108,Z109,Z110,Z111,Z112,Z113,Z114a,Z114b,Z100a
21534	12815033	Liang,Y.-K., Wang,Y., Zhang,Y., Li,S.-G., Lu,X.-C., Li,H., Zou,C., Xu,Z.-H. and Bai,S.-N.	OsSET1, a novel SET-domain-containing gene from rice.	J. Exp. Bot.	54(389)	1995-1996	2003	IEZ1	OsiEZ1, OsSET1, SET1, iEZ1, OsEZ1/OsiEZ1, OsEZ1, EZ1, ez1, OsSET15, SDG718, DLN84, OsDLN84
21535	11929961	Lid,S.E., Gruis,D., Jung,R., Lorentzen,J.A., Ananiev,E., Chamberlin,M., Niu,X., Meeley,R., Nichols,S. and Olsen,O.A.	The defective kernel 1 (dek1) gene required for aleurone cell development in the endosperm of maize grains encodes a membrane protein of the calpain gene superfamily.	Proc. Natl. Acad. Sci. U.S.A.	99(8)	5460-5465	2002	ADL1	OsADL1
21536	15951489	Lieberherr,D., Thao,N.P., Nakashima,A., Umemura,K., Kawasaki,T. and Shimamoto,K.	A Sphingolipid Elicitor-Inducible Mitogen-Activated Protein Kinase Is Regulated by the Small GTPase OsRac1 and Heterotrimeric G-Protein in Rice.	Plant Physiol.	138(3)	1644-1652	2005	RAC1,MAPK5A,DSG1	OsRAC1, OsRac1, Os Rac1, Rac1, Os-Rac1,OsMAPK5a,OsMAPK6, MAPK6, OsMPK6, OsSIPK, SIPK, OsMAPK1, MAPK1, MPK1, OsMPK1, MPK6, OsDSG1
21537	12751334	Lin,C., Jiang,L., Zhang,X., Qian,X., Liang,Z. and Yang,J.	Cloning and prokaryotic expression of a cDNA encoding a putative mitochondrial malate dehydrogenase in Oryza sativa	DNA Seq.	14(1)	75-77	2003	MMDH	OsmMDH, mMDH, OsMDH1.2, MDH1.2, OsLdh1, Ldh1
21538	15620222	Lin,C.F., Jiang,R.H., Jiang,L.Z., Qian,X.Y., Attia,K. and Yang,J.S.	Cloning, characterization and prokaryotic expression of cytosolic malate dehydrogenase from Oryza sativa.	DNA Seq.	15(4)	314-318	2004	FLO16	CMDH, OscMDH, cMDH, OsMDH, MDH, OsFLO16, OsMDH10.1, MDH10.1, OsLdh11, Ldh11
21539	15620214	Lin,C.F., Wei,C., Jiang,L.Z., Li,K.G., Qian,X.Y., Attia,K. and Yang,J.S.	Isolation, characterization and expression analysis of a leaf-specific phosphoenolpyruvate carboxylase gene in Oryza sativa.	DNA Seq.	15(4)	269-276	2004	_,PPC2A	,Osppc, OSPPC, Osppc2a, ppc2a
21540	10677431	Lin,C.M., Koh,S., Stacey,G., Yu,S.M., Lin,T.Y. and Tsay,Y.F.	Cloning and functional characterization of a constitutively expressed nitrate transporter gene, OsNRT1, from rice.	Plant Physiol.	122(2)	379-388	2000	NRT1	OsNRT1, OsNRT1;1, OsNRT1.1, OsNRT1.1a, OsNRT1.1b, NRT1.1, NRT1.1a, NRT1.1b, OsNPF8.9, NPF8.9 , OsNRT1.1B
21541	16169685	Lin,T., He,X., Yang,L., Shou,H. and Wu,P.	Identification and characterization of a novel water-deficit-suppressed gene OsARD encoding an aci-reductone-dioxygenase-like protein in rice	Gene	360(1)	27-34	2005	SIP2A,ERF3,ACO1,EIL1,ACS1,SAMS1,ETR2	Sip2A, ARD 2, ARD2, OsARD2, OsARD, IDI1, OsIDI1,AP37, OsAP37, OsERF3, OsERF#075, OsERF075, OsERF75, ERF75, AP2/EREBP#004, AP2/EREBP4, OsBIERF2, BIERF2, DLN23, OsDLN23,OsACO1, ACO,OsEIL1, EIN3, OsEIN3, MHZ6, OsEIL1a, EIL1a, OsEIL1b, EIL1b,ACC1*, OsACS1, Os-ACS1, ACC1, OsACC1,OsSAMS1, OS-SAMS1, OsSAMS, SAM, SAMS,etr2, OsPK1, PK1, ERL1, OsETR2, OsERL1, OS-ETR2, OsERS3
21542	9599133	Lin,T.Y., Wang,J.F., Liu,K.H. and Wang,C.T.	Cloning and sequencing of a rice cDNA encoding translation elongation factor-1 alpha (Accession No. AF030517) (PGR98-058)	Plant Physiol.	116(4)	1604	1998	RFA1	rfa1*, REFA1, refa1, OseEF-1A, eEF-1A, Osef1a1
21543		Lira-Ruan,V., Ross,E.J.H., Sarath,G., Klucas,R.V. and Arredondo-Peter,R.	Mapping and analysis of a hemoglobin gene family from Oryza sativa	Plant Physiol. Biochem.	40(3)	199-202	2002	Hb4,Hb1,Hb3,Hb2	OsHB4, HB4, OsNSHB4, NSHB4, OsPgb1.4, Pgb1.4,HB1, OsHB1, GLB1A, rHb1, ORYsa GLB1a, nsHb1, OsNSHB1, hb1, nsHb, OsPgb1.1, Pgb1.1,HB3, OsNSHB3, NSHB3, OsPgb1.3, Pgb1.3,HB2, OsHB2, OsNSHB2, hb2, GLB1b, ORYsa GLB1b, OsPgb1.2, Pgb1.2
21544	1623185	Litts,J.C., Erdman,M.B., Huang,N., Karrer,E.E., Noueiry,A., Quatrano,R.S. and Rodriguez,R.L.	Nucleotide sequence of the rice (Oryza sativa) Em protein gene (Emp1).	Plant Mol. Biol.	19(2)	335-337	1992	EM	Em*, EMP1, Emp1, EM, Em, OsEm, Osem, OsLEA21, OsEm1, Em1 
21545	16202242	Liu,J.G., Yao,Q.H., Zhang,Z., Peng,R.H., Xiong,A.S., Xu,F. and Zhu,H.	Isolation and characterization of a cDNA encoding two novel heat-shock factor OsHSF6 and OsHSF12 in Oryza Sativa L.	J. Biochem. Mol. Biol.	38(5)	602-608	2005	HSFA2C,HSFB4B	HSfA2c, OsHsfA2c, OsHsf-25, rHsf6, OsHSF6, HSF25, OsHSF25, HSF6, OsHsfA6a, HsfA6a ,HSFB4b, OsHSFB4b, OsHsf-19, OsHSF19, rHsf12, OsHSF12, HSF12, HSF19
21547	9729167	Liu,K.H. and Lin,T.Y.	Cloning of a cDNA encoding a lipid-transfer protein from rice (Accession No. AF051369) (PGR98-085)	Plant Physiol.	117(1)	333	1998	LTP1.15	OsLTP1.15, OsLtp1.15, OsLTPL23, LTPL23
21548	12615950	Liu,L.H., Ludewig,U., Frommer,W.B. and N.	AtDUR3 encodes a new type of high-affinity urea/H+ symporter in Arabidopsis.	Plant Cell	15(3)	790-800	2003	DUR3	OsDUR3 
21549	7858235	Liu,Q., Umeda,M. and Uchimiya,H.	Isolation and expression analysis of two rice genes encoding the major intrinsic protein.	Plant Mol. Biol.	26(6)	2003-2007	1994	TIP1;1,NIP1;1	OsTIP1;1, TIP1-1, rTIP1,OsNIP1;1, NIP1-1, rMIP1, MIP1, OsNIP1.1, NIP1.1
21550	14535884	Liu,W., Xu,Z.H., Luo,D. and Xue,H.W.	Roles of OsCKI1, a rice casein kinase I, in root development and plant hormone sensitivity.	Plant J.	36(2)	189-202	2003	HBD2	OsCKI1, CKI, hbd2, CKI1, LTG1, OsCKI1/LTRPK1, LTRPK1, OsLTRPK1, LSES1, OsLSES1
21551	12561471	Liu,W.D. and Wang,S.P.	Analysis and mapping of homologous sequences of barley disease resistance gene Mlo and maize disease resistance gene Hm1 in rice	Acta Genetica Sinica	29(10)	875-879	2002	RD,MLO_	Rd, DFR, OsDFR, OS-DFR, OsDFR1, DFR1, DFR-1,OsMLO6, OsMLO1, OsMlo1, Mlo, OsMlo-1, Mlo1, MLO6
21552		Liu,Z., Pan,N. and Chen,Z.	Cloning and sequencing of calmodulin cDNA from rice (oryza sativa)	Acta Bot. Sin.	35	363-369	1991		
21553	10528264	Lopez-Dee,Z.P., Wittich,P., M., Rigola,D., I., Gorla,M.S., Kater,M.M. and Colombo,L.	OsMADS13, a novel rice MADS-box gene expressed during ovule development.	Dev Genet.	25(3)	237-244	1999	MADS13	OsMADS13, MAF1, RMADS206
21555	12172034	Lu,C.A., Ho,T.H., Ho,S.L. and Yu,S.M.	Three Novel MYB Proteins with One DNA Binding Repeat Mediate Sugar and Hormone Regulation of alpha-Amylase Gene Expression.	Plant Cell	14(8)	1963-1980	2002	MYBS3,AMY3D,MYBS2,MYBS1	OsMYBS3,Amy3D/E*(RAmy3D/E), alpha Amy3, AmyII-4, AMY1.3, Amy3D, Amy3D/E*, RAmy3D/E, Amy3D_E, Amy8, aAmy3, RAmy3D, OsAmy3D, alphaAmy3, OsRamy3D,OsMYBS2,OsMYBS1, Os-MYBS1, Mybs1
21556	15683393	Lu,Y., Lueders,T., Friedrich,M.W. and Conrad,R.	Detecting active methanogenic populations on rice roots using stable isotope probing.	Environ. Microbiol.	7(3)	326-336	2005		
21557	15685422	Lu,Z., Takano,T. and Liu,S.	Purification and characterization of two ascorbate peroxidases of rice (Oryza sativa L.) expressed in Escherichia coli.	Biotechnol. Lett.	27(1)	63-67	2005	APX2,APX1	OsAPX2, OsAPx02, APXb, OsAPx2, OSAPX2, APx2, cAPX, OsAPX1, APX1,OsAPX1, APXa, OsAPXa, OsAPx01, OsAPx1, OSAPX1, APx1, cAPX, APX2, cAPXa, OscAPXa
21558	2649869	Luan,S. and Bogorad,L.	Nucleotide sequences of two genes encoding the light harvesting chlorophyll a/b binding protein of rice.	Nucleic Acids Res.	17(6)	2357-2358	1989	CAB2R,CAB1R	Oscab2R, CAB-2, OsLhcp, Lhcb1, Lhcb1a, OsLhcb1, OsLhcb1a ,cab1R, LHCP, CAB, OsLhcb1, Lhcb1, Cab1, OsCAB1, Lhcb1b, OsLhcb1b, CAB2R
21559	1392604	Luan,S. and Bogorad,L.	A rice cab gene promoter contains separate cis-acting elements that regulate expression in dicot and monocot plants.	Plant Cell	4(8)	971-981	1992	CAB1R	cab1R, LHCP, CAB, OsLhcb1, Lhcb1, Cab1, OsCAB1, Lhcb1b, OsLhcb1b, CAB2R
21560	11264415	Lukens,L. and Doebley,J.	Molecular evolution of the teosinte branched gene among maize and related grasses.	Mol. Biol. Evol.	18(4)	627-638	2001	FC1	fc1, OsTB1, tb1, OsTB1/FC1, Os TB1, TB1, OsFC1, MP3, OsMP3
21561	16163610	Luo,H., Song,F., Goodman,R.M. and Zheng,Z.	Up-Regulation of OsBIHD1, a Rice Gene Encoding BELL Homeodomain Transcriptional Factor, in Disease Resistance Responses.	Plant Biol.	7(5)	459-468	2005	BIHD1	OsBIHD1
21562	9679062	Luschnig,C., Gaxiola,R.A., Grisafi,P. and Fink,G.R.	EIR1, a root-specific protein involved in auxin transport, is required for gravitropism in Arabidopsis thaliana.	Genes Dev.	12(14)	2175-2187	1998	PIN1B	PIN1A, OsPIN1A, OsPIN1a, REH1, OsPIN1, OsPIN1b, REH1/OsPIN1
21563	16240171	Pramanik,M.H. and Imai,R.	Functional Identification of a Trehalose 6-phosphate Phosphatase Gene that is Involved in Transient Induction of Trehalose Biosynthesis during Chilling Stress in Rice.	Plant Mol. Biol.	58(6)	751-762	2005	TPP1,TPP5,TPP3,TPP8,TPP7,TPP4,TPP6,TPP9	OsTPP1, OsTPS, TPP,OsTPP5,OsTPP3, TPS3, OsTPS3,OsTPP8, OsTPP2,OsTPP7,OsTPP4, OsTPP7, TPP7, OsTPP2, TPP2,OsTPP6, OsTPP5, TPP5,OsTPP9, OsTPP3, TPP3
21564	12582559	M., Lihuang,Z. and Akiyama,T.	Molecular cloning, characterization, expression and chromosomal location of OsGAPDH, a submergence responsive gene in rice ( Oryza sativa L.).	Theor. Appl. Genet.	105(1)	34-42	2002	GAPDH(T)	OsGAPDH(t)
21566	15159629	Ma,H., Xu,S.P., Luo,D., Xu,Z.H. and Xue,H.W.	OsPIPK 1, a rice phosphatidylinositol monophosphate kinase, regulates rice heading by modifying the expression of floral induction genes.	Plant Mol. Biol.	54(2)	295-310	2004	PIPK1	OsPIPK1, PIP5K
21567	9750105	Macknight,R., Lister,C. and Dean,C.	Rice cDNA clones OsGRP1 and OsGRP2 (Accession Nos. AJ002893 and AJ002894, respectively) define two classes of glycine-rich RNA-binding proteins (PGR98-153)	Plant Physiol.	117(4)	1527	1998		
21568	9426621	Magaraggia,F., Solinas,G., Valle,G., Giovinazzo,G. and Coraggio,I.	Maturation and translation mechanisms involved in the expression of a myb gene of rice.	Plant Mol. Biol.	35(6)	1003-1008	1997	_	Osmyb7, myb7, OsMYB38, MYB38, Os2R_MYB28, 2R_MYB28
21569		Mago,R., Nair,S. and Mohan,M.	Resistance gene analogues from rice: cloning, sequencing and mapping	Theor. Appl. Genet.	99(1-2)	50-57	1999	_,_,_,_,_,_,_,_,_,_,_,_,_,_	RGA29,RGA15,RGA2,RGA8,RGA12,RGA16,RGA1,RGA38,RGA40,RGA42,RGA33,RGA59,RGA47,RGA7
21570	14550537	Majumder,A.L., Chatterjee,A., K. and Majee,M.	Diversification and evolution of L-myo-inositol 1-phosphate synthase.	FEBS Lett.	553(1-2)	3-10	2003	INO1	OsINO1, MIPS, IPS, RINO1, OsINO1-1, OsRINO1, OsMIPS1, MIPS1
21571	10527423	Malz,S. and Sauter,M.	Expression of two PIP genes in rapidly growing internodes of rice is not primarily controlled by meristem activity or cell expansion.	Plant Mol. Biol.	40(6)	985-995	1999	PIP2A,PIP1A	OsPIP2a, PIP2-1, PIP2a, PIP2.1, OsPIP2;1, PIP2;1, OsPIP2-1,OsPIP1a, OsPIP1;1, PIP1a, RWC-1, PIP1-1, RWC1, OsPIP1-1, PIP1;1, PIP1-5
21572	15668792	Margis-Pinheiro,M., Zhou,X.R., Zhu,Q.H., Dennis,E.S. and Upadhyaya,N.M.	Isolation and characterization of a Ds-tagged rice (Oryza sativa L.) GA-responsive dwarf mutant defective in an early step of the gibberellin biosynthesis pathway.	Plant Cell Rep.	23(12)	819-833	2005	KS1,KS6,KS4,KS3,KS5,KS7	OsKS1, KS1, KS1A, KSL1, OsKSL1, OsKS1A, OsKS1B, OsKS1C, Ks1, Os KS1, OsTPS26, TPS6, OsTPS6,OsKS6, KS6, KSL6, OsKSL6, KS5, OsKS5, OsTPS9, TPS9, TPS14, OsTPS14,OsKS4, KS4, KSL4, OsKSL4, DTS2, OsDTS2, OsTPS16, TPS16, TPS8, OsTPS8,OsKS3, OSKS3, KS3, KSL3, OsKSL3, OsKS2, KS2, OsTPS25, TPS39, OsTPS39,OsKS5, KS5, KSL5, OsKSL5, KSL5i, OsKSL5i, KSL5j, OsKSL5j, KS6, OsKS6, OsTPS8, TPS45, OsTPS45,OsKS7, KS7, KSL7, OsKSL7, DTC1, OsDTC1, OsKS3, OsDTC1/OsKS7, OsTPS6, TPS6, TPS38, OsTPS38
21575	2139168	Masumura,T., Hibino,T., Kidzu,K., Mitsukawa,N., Tanaka,K. and Fujii,S.	Cloning and characterization of a cDNA encoding a rice 13 kDa prolamin.	Mol. Gen. Genet.	221(1)	1-7	1990	PRO13A.1	RP6, Prol-18, OsEnS-93, pro13a.1, OsPRO13A.1, PROLM25
21576	8865668	Mathews,S. and Sharrock,R.A.	The phytochrome gene family in grasses (Poaceae): a phylogeny and evidence that grasses have a subset of the loci found in dicot angiosperms.	Mol. Biol. Evol.	13(8)	1141-1150	1996	PHYB,LHD3,PHYA	phyB, PHYB1, OsPHYB, OsphyB, OsYHB, YHB, OsPHYB/OsYHB,PHYC, OsPHYC, OsPHYCa, OsPHYCb, OsLHD3,phyA, PHYA* (phyA), PHYA*, Phya, PHY18, phy 18, OsPHYA 
21577	9787463	Matsuki,R., Iwasaki,T., Shoji,K., Jiang,C.J. and Yamamoto,N.	Isolation and characterization of two importin-beta genes from rice.	Plant Cell Physiol.	39(8)	879-884	1998	IMPB2,IMPB1	Importin beta 2,Importin beta 1
21578	1397289	Matsumoto,S., Oizumi,N., Taira,H. and Ejiri,S.	Cloning and sequencing of the cDNA encoding rice elongation factor 1 beta'.	FEBS Lett.	311(1)	46-48	1992	EEF1B'	eEF-1beta', EF-1beta'
21579	8307147	Matsumoto,S., Terui,Y., Xi,S., Taira,H. and Ejiri,S.	Cloning and characterization of the cDNA encoding rice elongation factor 1 beta.	FEBS Lett.	338(1)	103-106	1994	EEF1B',EEF1B	eEF-1beta', EF-1beta',eEF-1beta, EF-1beta
21580		Matsuoka,M.	Classification and characterization of cDNA that encodes the light-harvesting chlorophyll a/b binding protein of photosystem II from rice	Plant Cell Physiol.	31(4)	519-526	1990	CAB1R,LHCB2.1	cab1R, LHCP, CAB, OsLhcb1, Lhcb1, Cab1, OsCAB1, Lhcb1b, OsLhcb1b, CAB2R,LHCB, LHCP II, Lhcb2, OsLhcb2, Lhcb2.1, OsLhcb2.1 
21581		Matsuoka,M., Kano-Murakami,Y., Tanaka,Y., Ozeki,Y. and Yamamoto,N.	Classification and nucleotide sequence of cDNA encoding the small subunit of ribulose-1,5-bisphosphate carboxylase from rice	Plant Cell Physiol.	29(6)	1015-1022	1988	RBCS,RBCS3	rbcS, OsRbcS, RBCS-C, RbcS2, OsRBCS2, RbcS1, OsRbcS2, OsrbcS1,RbcS3, OsRBCS3, OsRbcS3, rbcS 
21583	9747803	Mauch,F., Reimmann,C., Freydl,E., Schaffrath,U. and Dudler,R.	Characterization of the rice pathogen-related protein Rir1a and regulation of the corresponding gene.	Plant Mol. Biol.	38(4)	577-586	1998	RIR1A	Rir1b, Rir1a, OsRALF-28, OsRALF28, RALF-28, RALF28, OsRIR1A, OsRIR1B
21584	11435398	Mayer,K., Murphy,G., Tarchini,R., Wambutt,R., Volckaert,G., Pohl,T., Dusterhoft,A., Stiekema,W., Entian,K.D., Terryn,N., Lemcke,K., Haase,D., Hall,C.R., A.M., Tingey,S.V., Mewes,H.W., Bevan,M.W. and Bancroft,I.	Conservation of microstructure between a sequenced region of the genome of rice and multiple segments of the genome of Arabidopsis thaliana.	Genome Res.	11(7)	1167-1174	2001		
21585	12372141	McCarthy,E.M., Liu,J., Lizhi,G. and McDonald,J.F.	Long terminal repeat retrotransposons of Oryza sativa.	Genome Biol.	3(10)	RESEARCH0053	2002	_,_,_,RIRE9,RIRE7,TOS17,RIRE2,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,RIRE1,RIRE8,_,TOS1,_	Osr15, Tos12 ,Osr36,Osr37,RIRE9, Osr27, Rire9,RIRE7, Osr31, Rire7,Tos17, Osr21, Tos17chr10, Tos17_Chr10, Tos17chr7, Tos17_Chr7,RIRE2, Osr26, Rire2, Retrosat2,Osr1, Tos14, Rire15,Osr3,Osr5,Osr2,Osr6,Osr7,Osr8,Osr9,Osr10,Osr12,Osr16, Tos6,Osr17,Osr18,Osr19,Osr22,Osr25,Osr24,Osr20,Osr28,Osr29,Osr30,Osr32,Osr34,Osr38,Osr39,Osr40,Osr41,Osr42,Osr43,Osr44,Osr35,Osr23,RIRE1, Osr11, Rire1,RIRE8, Osr33, Rire8,Osr4,Tos1*, Tos1, Osr14, Tos4,Osr13, Tos5 
21586	2101689	McElroy,D., Rothenberg,M. and Wu,R.	Structural characterization of a rice actin gene.	Plant Mol. Biol.	14(2)	163-171	1990	ACT1	act1, AC1, RAC1, RAc1, ACT11, OsACT1
21587	2136633	McElroy,D., Zhang,W., Cao,J. and Wu,R.	Isolation of an efficient actin promoter for use in rice transformation.	Plant Cell	2(2)	163-171	1990	ACT1	act1, AC1, RAC1, RAc1, ACT11, OsACT1
21588	1753941	McElroy,D., Blowers,A.D., Jenes,B. and Wu,R.	Construction of expression vectors based on the rice actin 1 (Act1) 5' region for use in monocot transformation.	Mol. Gen. Genet.	231(1)	150-160	1991	ACT1	act1, AC1, RAC1, RAc1, ACT11, OsACT1
21589	14581626	McGee,J.D., Roe,J.L., Sweat,T.A., Wang,X., Guikema,J.A. and Leach,J.E.	Rice phospholipase d isoforms show differential cellular location and gene induction.	Plant Cell Physiol.	44(10)	1013-1026	2003	PLDalpha4,PLDdelta2,PLDalpha5,PLDALPHA3,PLDalpha1	OsPLDalpha4, RPLD3, OsPLDeta2, OsC2DP50, C2DP50,OsPLDdelta2, RPLD5, OsPLDnu1, OsC2DP33, C2DP33,OsPLDalpha5, RPLD4, OsPLDeta3, OsC2DP51, C2DP51,OsPLDalpha3, RPLD2, PLDalpha3, OsPLDeta1, PLD2, OsC2DP52, C2DP52,RPLD1, PLD1, OsPLDalpha1, OsC2DP2, C2DP2
21591		Medina,J. and Quatrano,R.S.	Molecular cloning and sequence analysis of a cDNA encoding a SEC14-like protein from rice (Accession No. U88068) (PGR98-042)	Plant Physiol.	116(3)	1192	1998	SEC14-4	OsSec14-4, Sec14-4
21592	8790293	Meijer,A.H., E.L. and Hoge,J.H.	Novel members of a family of AT hook-containing DNA-binding proteins from rice are identified through their in vitro interaction with consensus target sites of plant and animal homeodomain proteins.	Plant Mol. Biol.	31(3)	607-618	1996	_,_,_	Os-AT2,Os-AT1,Os-PF1, PF1
21593	9076993	Meijer,A.H., Scarpella,E., E.L., Qin,L., Taal,A.J., Rueb,S., Harrington,S.E., McCouch,S.R., Schilperoort,R.A. and Hoge,J.H.	Transcriptional repression by Oshox1, a novel homeodomain leucine zipper protein from rice.	Plant J.	11(2)	263-276	1997	HOX1	Oshox1, OsHox1, OsHDZ38, OsHDZIP38, HDZ38, HDZIP38
21595		Meijer,A.H., R.J., Qin,L. and Hoge,J.H.C.	Osjab1: (Accession No. AF072849), A rice homolog of the human JAB1 transcriptional coactivator (PGR98-149)	Plant Physiol.	117(4)	1526	1998	JAB1	Osjab1, jab1, OsJAB1, CSN5, OsCSN5,OsCSN5A CSN5A, 
21596	10732669	Meijer,A.H., R.J., d'Erfurth,I., Shen,W. and Hoge,J.H.	HD-Zip proteins of families I and II from rice: interactions and functional properties.	Mol. Gen. Genet.	263(1)	12-21	2000	HOX6,HOX7,HOX5,SGD2,HOX4,HOX1	Oshox6, OsHox6, OsHDZ33, OsHDZIP33, HDZ33, HDZIP33,Oshox7, OsHox7, OsHDZ5, OsHDZIP5, HDZ5, HDZIP5,Oshox5, OsHox5, EIP9, OsHDZ25, OsHDZIP25, HDZ25, HDZIP25,  OsHDZ26, OsHDZIP26, HDZ26, HDZIP26,HOX3, Oshox3, OsHox3, OsHDZ1, HDZ1, OsHDZIP1, HDZIP1,Oshox4, OsHox4, OsHDZ31, OsHDZIP31, HDZ31, HDZIP31,Oshox1, OsHox1, OsHDZ38, OsHDZIP38, HDZ38, HDZIP38
21597	8759917	Mekhedov,S.I. and Kende,H.	Submergence enhances expression of a gene encoding 1-aminocyclopropane-1-carboxylate oxidase in deepwater rice.	Plant Cell Physiol.	37(4)	531-537	1996	ACO1	OsACO1, ACO
21598		Membre,N. and Bernier,F.	The rice genome expresses at least six different genes for oxalate oxidase/germin-like proteins (Accession Nos. AF032971, AF032972, AF032973, AF032974, AF032975, and AF032976) (PGR98-021)	Plant Physiol.	116(2)	868	1998	GER6,_,GER4,GER7,GER5,GER3,GER1,GER2	OsGLP8-7, GLP8-7, OsGER6, OsRGLP2, RGLP2, OsCDP8.7, CDP8.7,GER8, OsGLP1-4, GLP1-4, OsGLP1-3, GLP1-3,OsGER4, OsGLP1-2, GLP1-2, OsGLP1-1, GLP1-1, OsCDP1.2, CDP1.2,OsGER7, OsGLP3-7, GLP3-7, OsCDP3.11, CDP3.11,OsGLP1, GLP1, GER1, GLP110, OsGER1, OsGER5, OsGLP8-14, GLP8-14, OsCDP8.14, CDP8.14,OsGLP8-2, GLP8-2, OsGER3, GLP16, OsEnS-117, OsCDP8.2, CDP8.2,OsGLP8-4, GLP8-4, OsGER1, OsGer1, OsCDP8.4, CDP8.4,OsGLP8-3, GLP8-3, OsGER2, OsCDP8.3, CDP8.3
21599		Mi,Z., Wang,S. and Wu,N.	Isolation of osRACD gene encoding a small GTP-binding protein from rice	Chin. Sci. Bull.	47	1673-1679	2002	RAC5	Osrac5, OsRac5, RACD, OsRacD, OsRACD
21600	8720923	Midoh,N. and Iwata,M.	Cloning and characterization of a probenazole-inducible gene for an intracellular pathogenesis-related protein in rice.	Plant Cell Physiol.	37(1)	9-18	1996	PR10A	PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 
21602	8287970	Minakuchi,K., Yabushita,T., Masumura,T., Ichihara,K. and Tanaka,K.	Cloning and sequence analysis of a cDNA encoding rice glutaredoxin.	FEBS Lett.	337(2)	157-160	1994	GRX	grx, OsGRX, OsGRX14, OsGrx9, OsGrxC2;2, GrxC2;2, OsGrxC2.2, GrxC2.2
21603	8424958	Minami,E. and Tanaka,Y.	Nucleotide sequence of the gene for phenylalanine ammonia-lyase of rice and its deduced amino acid sequence.	Biochim. Biophys. Acta	1171(3)	321-322	1993	PAL	OsPAL, OsPAL08, PAL2, GP-28, GP28, PAL08, OsPAL2, OsPAL8, PAL8
21604	2806257	Minami,E., Ozeki,Y., Matsuoka,M., Koizuka,N. and Tanaka,Y.	Structure and some characterization of the gene for phenylalanine ammonia-lyase from rice plants.	Eur. J. Biochem.	185(1)	19-25	1989	PAL1	OsPAL, Pal1*, Pal1, PAL, Pal_1, PalI, PAL2, OsPAL01, PAL01, OSPAL, CP-1, GP-1, OsPAL1, PAL3, OsPAL3
21605	8759920	Minami,E., Kuchitsu,K., He,D.Y., Kouchi,H., Midoh,N., Ohtsuki,Y. and Shibuya,N.	Two novel genes rapidly and transiently activated in suspension-cultured rice cells by treatment with N-acetylchitoheptaose, a biotic elicitor for phytoalexin production.	Plant Cell Physiol.	37(4)	563-567	1996	EL3,EL2	,Orysa; EL2
21606	16172530	Miyashita,N.T., Yoshida,K. and Ishii,T.	DNA variation in the metallothionein genes in wild rice Oryza rufipogon: Relationship between DNA sequence polymorphism, codon bias and gene expression.	Genes Genet. Syst.	80(3)	173-183	2005	MT2A,MTI3A,MTI2B,MT2B	OsMT2a, MT2a, met6, Osmet6, OsMT-2, MT-2, rgMT-2, OsMT-I-2a, OsMT2-1, MT-I-2a, MT2-1,OsMT3a, MT3a, OsMT-I-3a, MT-I-3a, MTe, met2, OsMT3, MT3, OsMTI-3a, MTI-3a,OsMT2c, OsMT-I-2b, MT2c, MT-I-2b, MTc, met5, ricMT, OsMT2,OsMT2b, MT2b, OsMT-I-2c, MT-I-2c, MT2C, MT2BL, OsMT2C, OsMT2BL, MTE, OsMT2b1, OsMT2b2, MT2b1, MT2b2, MTb, met1, OsMTe, OsMT-I-2c, OsB22EL8, MTe, MT-I-2c, B22EL8
21607	14617083	Miyoshi,K., Ito,Y., Serizawa,A. and Kurata,N.	OsHAP3 genes regulate chloroplast biogenesis in rice.	Plant J.	36(4)	532-540	2003	HAP3B,HAP3A,HAP3C	OsHAP3B, OsNF-YB-3, NFYB3, OsNF-YB4, NF-YB4, NFYB4, OsHAP3C, HAP3C,OsHAP3A,OsNF-YB-2, NFYB2, NF-YB2,OsHAP3C, OsNF-YB-4, NFYB4, OsNF-YB3, NF-YB3, NFYB3, OsHAP3B, HAP3B
21608	14711998	Miyoshi,K., Ahn,B.O., Kawakatsu,T., Ito,Y., Itoh,J., Nagato,Y. and Kurata,N.	PLASTOCHRON1, a timekeeper of leaf initiation in rice, encodes cytochrome P450.	Proc. Natl. Acad. Sci. U.S.A.	101(3)	875-880	2004	PLA1	pla1, OsPLA1, plt1, CYP78A11
21609	1478924	Mizuno,K., Kimura,K., Arai,Y., Kawasaki,T., Shimada,H. and Baba,T.	Starch branching enzymes from immature rice seeds.	J. Biochem.	112(5)	643-651	1992	SBE1,SBE4	sbe1, Rbe1. Sbe1, sbe1*(QEI), RBE1, BEI, SBE I, QEI, OsBEI, BE1, OsSBE1, OsSBEI, SBEI,RBE4, OsSBE4, BEIIa, QEIIb, BEIIA, OsBEIIa
21610	8360192	Mizuno,K., Kawasaki,T., Shimada,H., Satoh,H., Kobayashi,E., Okumura,S., Arai,Y. and Baba,T.	Alteration of the structural properties of starch components by the lack of an isoform of starch branching enzyme in rice seeds.	J. Biol. Chem.	268(25)	19084-19091	1993	SBE3,AE	SBEIII*, SBEIII, Sbe3, RBE3, QEIIa, QEIIA, BEIIb, BEIIB, SBEIIb, OsBEIIb, sbe3, SBE III, OsSBEIIb, SBEIIb,ae
21611	14634153	Mizuno,K., Iida,T., Takano,A., Yokoyama,M. and Fujimura,T.	A new 9-lipoxygenase cDNA from developing rice seeds.	Plant Cell Physiol.	44(11)	1168-1175	2003	R9-LOX1	Osr9-LOX1, OsLOX3, LOX3
21612	1326298	Mochizuki,K., Umeda,M., Ohtsubo,H. and Ohtsubo,E.	Characterization of a plant SINE, p-SINE1, in rice genomes.	Jpn. J. Genet.	67(2)	155-166	1992	_,_,_,_,_,_,_	p-SINE1-r3,p-SINE1-r1, p-SINE1-r1* ,p-SINE1-r7,p-SINE1-r2,p-SINE1-r4,p-SINE1-r5,p-SINE1-r6
21613	10394955	Moon,Y.H., Jung,J.Y., Kang,H.G. and An,G.	Identification of a rice APETALA3 homologue by yeast two-hybrid screening.	Plant Mol. Biol.	40(1)	167-177	1999	SPW1,MADS4	SPW1, spw1, MADS16, OsMADS16,OsMADS4, PI1, DLN140, OsDLN140
21614	10444103	Moon,Y.H., Kang,H.G., Jung,J.Y., Jeon,J.S., Sung,S.K. and An,G.	Determination of the motif responsible for interaction between the rice APETALA1/AGAMOUS-LIKE9 family proteins using a yeast two-hybrid system.	Plant Physiol.	120(4)	1193-1204	1999	MFO1,RAP1A,MADS18,RAP1B,COG1	OsMADS6, MADS6, OsMFO1,OsMADS15, FDRMADS3, RMADS215, MADS15, DEP,OsMADS18, MADS2, OsMADS2, MADS28, OsMADS28, FDRMADS7, OsMADS18/28,MADS14, OsMADS14, FDRMADS6, RMADS211, AGL10,OsMADS17, MADS17, NMADS3, RMADS213, nmads3
21615	14572664	Moons,A.	Osgstu3 and osgtu4, encoding tau class glutathione S-transferases, are heavy metal- and hypoxic stress-induced and differentially salt stress-responsive in rice roots.	FEBS Lett.	553(3)	427-432	2003	GSTU3,GSTU4	OsGSTU3, OsGSTU29, GSTU29,OsGSTU4, GST4
21616	14572653	Moons,A.	Ospdr9, which encodes a PDR-type ABC transporter, is induced by heavy metals, hypoxic stress and redox perturbations in rice roots.	FEBS Lett.	553(3)	370-376	2003	PDR9	OsPDR9, ospdr9, OsPDR3, PDR3, OsABCG36/OsPDR9, OsABCG36
21617	9218720	Moons,A., Keyser,A. and Montagu,M.	A group 3 LEA cDNA of rice, responsive to abscisic acid, but not to jasmonic acid, shows variety-specific differences in salt stress response.	Gene	191(2)	197-204	1997	LEA3-1	OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3, OsLEA3A, LEA3A
21618	12060225	Morello,L., Bardini,M., Sala,F. and Breviario,D.	A long leader intron of the Ostub16 rice beta-tubulin gene is required for high-level gene expression and can autonomously promote transcription both in vivo and in vitro.	Plant J.	29(1)	33-44	2002	TUB4	OsTUB4, TUBB4, OSTB-16, R1623, RTUB-1, Ostub16
21619	1581574	Mori,H., Higo,K., Higo,H., Minobe,Y., Matsui,H. and Chiba,S.	Nucleotide and derived amino acid sequence of a catalase cDNA isolated from rice immature seeds.	Plant Mol. Biol.	18(5)	973-976	1992	CATA	CATA1, Cat A1*, OSCAT-A, Cat2, CatA1, CAT-A, OsCatA, OsCAT, CAT, catA, OSCATA, OsCATc, OsCATA, OsCAT1A, CAT1, OsCAT1, OsCATC, OsCAT2
21620	15939553	Mori,Y., Yamamoto,T., Sakaguchi,N., Ishibashi,T., Furukawa,T., Kadota,Y., Kuchitsu,K., Hashimoto,J., Kimura,S. and Sakaguchi,K.	Characterization of the origin recognition complex (ORC) from a higher plant, rice (Oryza sativa L.).	Gene	353(1)	23-30	2005	ORC3,ORC4,ORC5,ORC2	OsORC3,OsORC4,OsORC5,OsORC2
21621	15659629	Moriguchi,K., Suzuki,T., Ito,Y., Yamazaki,Y., Niwa,Y. and Kurata,N.	Functional isolation of novel nuclear proteins showing a variety of subnuclear localizations.	Plant Cell	17(2)	389-403	2005	_,_,_,AHP1,SCL30B,_,NCED1,_	NALP1,OsNMCP1a,,OsAHP1, OsAHL8, AHL8,OsSCL30, Os-SCL30, SCL30, OsSCL30b, Os-SCL30b,OsSAD1, SAD1, OsSUN2, SUN2, OsSUN1, SUN1,OsNCED1, OsCCD4a, CCD4a,OsRH5
21622		Morioka,S., Ueki,J. and Komari,T.	Characterization of two distinctive genomic clones (Accession Nos. AB001919 and AB001920) for phospholipase D from rice (PGR97-076)	Plant Physiol.	114(1)	396	1997	PLDALPHA3,PLDalpha1	OsPLDalpha3, RPLD2, PLDalpha3, OsPLDeta1, PLD2, OsC2DP52, C2DP52,RPLD1, PLD1, OsPLDalpha1, OsC2DP2, C2DP2
21623	8058828	Morita,S., Tasaka,M., Fujisawa,H., Ushimaru,T. and Tsuji,H.	A cDNA clone encoding a rice catalase isozyme.	Plant Physiol.	105(3)	1015-1016	1994	CATB	CatB, CAT-B, OsCatB, OsCATB, OsCAT1B, CAT1B, CAT2, OsCAT2
21625	15792960	Moritoh,S., Miki,D., Akiyama,M., Kawahara,M., Izawa,T., Maki,H. and Shimamoto,K.	RNAi-mediated Silencing of OsGEN-L (OsGEN-like), a New Member of the RAD2/XPG Nuclease Family, Causes Male Sterility by Defect of Microspore Development in Rice.	Plant Cell Physiol.	46(5)	699-715	2005	RAD	rad,rad*, OsRAD, GEN1, OsGEN-L, OsGEN1 
21626	7565598	Moriyama,H., Nitta,T. and Fukuhara,T.	Double-stranded RNA in rice: a novel RNA replicon in plants.	Mol. Gen. Genet.	248(3)	364-369	1995		
21627	15656983	Morsy,M.R., Almutairi,A.M., Gibbons,J., Yun,S.J. and B.G.	The OsLti6 genes encoding low-molecular-weight membrane proteins are differentially expressed in rice cultivars with contrasting sensitivity to low temperature.	Gene	344	171-180	2005	DREB1D,LTI6A,LTI6B	OsDREB1D, CBF4, ERF116, OsERF#116, OsERF116, AP2/EREBP#054, AP2/EREBP54, OsCbf1, OsCBF1,OsLti6a, Lti6a, OsLTI6A, OsRCI2-10,OsLti6b, Lti6b, OsLTI6B, OsRCI2-6
21628	9177027	Muench,D.G., Wu,Y., Zhang,Y., Li,X., Boston,R.S. and Okita,T.W.	Molecular cloning, expression and subcellular localization of a BiP homolog from rice endosperm tissue.	Plant Cell Physiol.	38(4)	404-412	1997	BIP1	OsBiP1, BiP1, BiP, Bip3, OsBiP3, BIP1/OsBIP3, OsMed37_2, Med37_2 
21629	15079051	Mukhopadhyay,A., Vij,S. and Tyagi,A.K.	Overexpression of a zinc-finger protein gene from rice confers tolerance to cold, dehydration, and salt stress in transgenic tobacco.	Proc. Natl. Acad. Sci. U.S.A.	101(16)	6309-6314	2004	SAP1	Osi-SAP1, ISAP1, OsiSAP1, OSISAP1, OsSAP1
21630	2973410	Mundy,J. and Chua,N.H.	Abscisic acid and water-stress induce the expression of a novel rice gene.	EMBO J.	7(8)	2279-2286	1988	RAB16D,RAB16B,RAB16A,RAB16C	rab21, OsLEA26, Rab16D, OsRab16,rab21, OsLEA28, OsRAB16D, OsRab16d, Rab16d, OsRAB16b, XERO1, OsXERO1, OsRD22, RD22,Rab16A, rab21, RAB21, OsRab21, OsRAB21, OsRAB-21, OsRab16A, OsLEA29, rab16A, OsRAB16A,rab21, OsLEA27, rab16C, OsRAB16C, DHD
21631	14634161	Murakami,M., Ashikari,M., Miura,K., Yamashino,T. and Mizuno,T.	The evolutionarily conserved OsPRR quintet: rice pseudo-response regulators implicated in circadian rhythm.	Plant Cell Physiol.	44(11)	1229-1236	2003	HD2,TOC1,PRR73,PRR95,PRR59	Hd2(t), Hd2, qHD2(t), OsPRR37, Os-PRR37, PRR37, Prr4, OsPRR4, DTH7, Os DTH7, OsCCT28, CCT28, Ghd7.1, PRR37/Hd2, EH7-2, EH7-2/Hd2, Hd2/PRR37, PRR37-1a, PRR37-1b, PRR37-1c, PRR37-2a, PRR37- 2, HD7.2,OsTOC1, OsPRR1, Os-PRR1, PRR1, OsRRA21, OsCCT07,OsPRR73, Os-PRR73, Prr3, OsPRR3, OsRRA20, OsCCT11, CCT11,OsPRR95, Os-PRR95, Prr2, OsPRR2, OsCCT33,OsPRR59, Os-PRR59, Prr5, OsPRR5, OsCCT38, CCT38
21632	15725670	Murakami,M., Matsushika,A., Ashikari,M., Yamashino,T. and Mizuno,T.	Circadian-Associated Rice Pseudo Response Regulators (OsPRRs): Insight into the Control of Flowering Time.	Biosci. Biotechnol. Biochem.	69(2)	410-414	2005	HD2,PRR73,PRR59,TOC1,PRR95	Hd2(t), Hd2, qHD2(t), OsPRR37, Os-PRR37, PRR37, Prr4, OsPRR4, DTH7, Os DTH7, OsCCT28, CCT28, Ghd7.1, PRR37/Hd2, EH7-2, EH7-2/Hd2, Hd2/PRR37, PRR37-1a, PRR37-1b, PRR37-1c, PRR37-2a, PRR37- 2, HD7.2,OsPRR73, Os-PRR73, Prr3, OsPRR3, OsRRA20, OsCCT11, CCT11,OsPRR59, Os-PRR59, Prr5, OsPRR5, OsCCT38, CCT38,OsTOC1, OsPRR1, Os-PRR1, PRR1, OsRRA21, OsCCT07,OsPRR95, Os-PRR95, Prr2, OsPRR2, OsCCT33
21633	14716315	Nagaki,K., Cheng,Z., Ouyang,S., Talbert,P.B., Kim,M., Jones,K.M., Henikoff,S., Buell,C.R. and Jiang,J.	Sequencing of a rice centromere uncovers active genes.	Nat Genet	36(2)	138-145	2004	CENH3	OsCENH3, CenH3
21634	9501993	Nagasaki,H., Yamamoto,K., Shomura,A., Koga-ban,Y., Takasuga,A., Yano,M., Minobe,Y. and Sasaki,T.	Rice class III chitinase homologues isolated by random cloning of rice cDNAs.	DNA Res.	4(6)	379-385	1997	_,_,_,_,_,RIXI ,_	C00481,C10150,C10923,C10501,C10122,C10701,C10728, OsChib3a, Chib3a, OsPR31, PR31, PR8, OsPR8
21635	12506001	Nagasawa,N., Miyoshi,M., Sano,Y., Satoh,H., Hirano,H., Sakai,H. and Nagato,Y.	SUPERWOMAN1 and DROOPING LEAF genes control floral organ identity in rice.	Development	130(4)	705-718	2003	SPW1,DL	SPW1, spw1, MADS16, OsMADS16,OsDL, dl(lop), lop, dl, dl1, OsDRPq3, DRPq3
21636	14701929	Nahm,M.Y., Kim,S.W., Yun,D., Lee,S.Y., Cho,M.J. and Bahk,J.D.	Molecular and Biochemical Analyses of OsRab7, a Rice Rab7 Homolog.	Plant Cell Physiol.	44(12)	1341-1349	2003	RAB7B3	OsRab7B3, Rab7B3, OsRab7, Rab7
21637	8820608	Nakagawa,H., Ohmiya,K. and Hattori,T.	A rice bZIP protein, designated OSBZ8, is rapidly induced by abscisic acid.	Plant J.	9(2)	217-227	1996	OSBZ8	OsBZ8, OsbZIP05, OsGBF1, GBF1, OsGBF1a, OsGBF1b
21638		Nakai,K., Inagaki,Y., Nagata,H., Miyazaki,C. and Iida,S.	Molecular characterization of the gene for dihydroflavonol 4-reductase of Japonica rice varieties	Plant Biotechnol.	15(4)	221-225	1998	RD	Rd, DFR, OsDFR, OS-DFR, OsDFR1, DFR1, DFR-1
21639	8616263	Nakamura,H., Satoh,W., Hidaka,S., Kagaya,Y., Ejiri,S. and Tsutsumi,K.	Genomic structure of the rice aldolase isozyme C-1 gene and its regulation through a Ca 2+ -mediated protein kinase-phosphatase pathway.	Plant Mol. Biol.	30(2)	381-385	1996	ALDCA,ALDP,ALDC2,ALDC1	AldC-a,Aldo, OsALDO, ALDO, FBAase, OsFBAase, ALDOA, OsALDOA ,GSC 233, AldC-2, OsAldC-2, OsFBA, FBA,AldC-1
21640	7770536	Nakamura,I., Kameya,N., Aoki,T., Tada,T., Norita,E., Kanzaki,H. and Uchimiya,H.	Nucleotide sequence of a rice cDNA encoding a homolog of the eukaryotic ribosomal protein S8.	Plant Physiol.	107(4)	1463-1464	1995	RPS8	S8
21641	9193078	Nakamura,T., Yokota,S., Muramoto,Y., Tsutsui,K., Oguri,Y., Fukui,K. and Takabe,T.	Expression of a betaine aldehyde dehydrogenase gene in rice, a glycinebetaine nonaccumulator, and possible localization of its protein in peroxisomes.	Plant J.	11(5)	1115-1120	1997	BAD1	Badh1, badh1, BAD1, BADH1, OsBADH1, BADH, OsALDH10A5, ALDH10A5 
21642	10095115	Nakamura,T., Yamaguchi,Y. and Sano,H.	Four rice genes encoding cysteine synthase: isolation and differential responses to sulfur, nitrogen and light.	Gene	229(1-2)	155-161	1999	RCS2,RCS4,ASTOL1,RCS3	rcs2,rcs4,RCS1, rcs1, OsOASTL-A2, OASTL-A2, OsASTOL1,rcs3, OsRCS3, OsOASTL-A1, OASTL-A1
21643	12147736	Nakamura,T., Meyer,C. and Sano,H.	Molecular cloning and characterization of plant genes encoding novel peroxisomal molybdoenzymes of the sulphite oxidase family.	J. Exp. Bot.	53(375)	1833-1836	2002	_	OsMCP, MCP, OsSO1, SO1
21644	16669000	Nakamura,Y. and Yamanouchi,H.	Nucleotide sequence of a cDNA encoding starch-branching enzyme, or Q-enzyme I, from rice endosperm	Plant Physiol.	99(3)	1265-1266	1992	SBE3,SBE1,SBE4	SBEIII*, SBEIII, Sbe3, RBE3, QEIIa, QEIIA, BEIIb, BEIIB, SBEIIb, OsBEIIb, sbe3, SBE III, OsSBEIIb, SBEIIb,sbe1, Rbe1. Sbe1, sbe1*(QEI), RBE1, BEI, SBE I, QEI, OsBEI, BE1, OsSBE1, OsSBEI, SBEI,RBE4, OsSBE4, BEIIa, QEIIb, BEIIA, OsBEIIa
21645	8680309	Nakamura,Y., Umemoto,T., Ogata,N., Kuboki,Y., Yano,M. and Sasaki,T.	Starch debranching enzyme (R-enzyme or pullulanase) from developing rice endosperm: purification, cDNA and chromosomal localization of the gene.	Planta.	199(2)	209-218	1996	PUL	OsPUL, SDBE, OsPUL3, RE
21646	16027975	Nakamura,Y., Francisco,P.B.,Jr., Hosaka,Y., Sato,A., Sawada,T., Kubo,A. and Fujita,N.	Essential amino acids of starch synthase IIa differentiate amylopectin structure and starch quality between japonica and indica rice varieties.	Plant Mol. Biol.	58(2)	213-227	2005	ALK	alk, SSII-3, OsSSIIa, OsSSII-3, SSIIa, SSS2A, OsSSIIaChr6, SS2a
21647	8666249	Nakase,M., Hotta,H., Adachi,T., Aoki,N., Nakamura,R., Masumura,T., Tanaka,K. and Matsuda,T.	Cloning of the rice seed alpha-globulin-encoding gene: sequence similarity of the 5'-flanking region to those of the genes encoding wheat high-molecular-weight glutenin and barley D hordein.	Gene	170(2)	223-226	1996	GLB1	glb1(t)*, glb1(t), glb1, alpha-Glb, Glb-1, OsGlb1, Glb1, Glb, OsEnS-77
21648	8980514	Nakase,M., Yamada,T., Kira,T., Yamaguchi,J., Aoki,N., Nakamura,R., Matsuda,T. and Adachi,T.	The same nuclear proteins bind to the 5'-flanking regions of genes for the rice seed storage protein: 16 kDa albumin, 13 kDa prolamin and type II glutelin.	Plant Mol. Biol.	32(4)	621-630	1996	CYSP13,GLU2,_,PRO13B.14	CysP13, OsCYSP13, CpP13, PG5a, Prol-06, pro13b.11, OsPRO13B.11, PROLM9, OsPROLM9,Glu2*(Gt1), Gt1, Glu2,RA17, RAP, RAG1, OsEnS-97,PG5b, Prol-08, pro13b.14, OsPRO13B.14
21649	9049271	Nakase,M., Aoki,N., Matsuda,T. and Adachi,T.	Characterization of a novel rice bZIP protein which binds to the alpha-globulin promoter.	Plant Mol. Biol.	33(3)	513-522	1997	REB	OsZIP33, RISBZ2, OsbZIP33
21651		Nakazaki,T. and Ikehashi,H.	Genomic sequence and polymorphisms of a rice chitinase gene, Cht4	Breeding Science	48(4)	371-376	1998	CHT4	Cht4(t)*(Chi4), Chi4, Cht4, OsChia2b, Chi-4, CHIT2, OsCHIT2, PR3, OsPR3
21654	12520304	Nakazaki,T., Okumoto,Y., Horibata,A., Yamahira,S., Teraishi,M., Nishida,H., Inoue,H. and Tanisaka,T.	Mobilization of a transposon in the rice genome.	Nature	421(6919)	170-172	2003	SLG,MPING	slg, Rurm1, Urm1, OsSUMO7, SUMO7,mPing
21655	10664124	Nakazono,M., Imamura,T., Tsutsumi,N., Sasaki,T. and Hirai,A.	Characterization of two cDNA clones encoding isozymes of the F(1)F(0)-ATPase inhibitor protein of rice mitochondria.	Planta.	210(2)	188-194	2000	_,_	IF1-1,IF1-2
21656	11027709	Nakazono,M., Tsuji,H., Li,Y., Saisho,D., Arimura,S., Tsutsumi,N. and Hirai,A.	Expression of a gene encoding mitochondrial aldehyde dehydrogenase in rice increases under submerged conditions.	Plant Physiol.	124(2)	587-598	2000	ALDH2A	OsALDH2a, ALDH2a, Aldh2a, OsSTA73, OsALDH2B5, ALDH2B5  
21657	3267237	Nandabalan,K. and Padayatty,J.D.	Putative termination sites for rDNA transcription in rice.	Biochem. Biophys. Res. Commun.	157(1)	68-74	1988	25S rRNA	25S rRNA
21658	2543387	Nandabalan,K. and Padayatty,J.D.	Initiation of transcription of rDNA in rice.	Biochem. Biophys. Res. Commun.	160(3)	1117-1123	1989	18S rRNA	18S  rRNA
21659	8940135	Nantel,A. and Quatrano,R.S.	Characterization of three rice basic/leucine zipper factors, including two inhibitors of EmBP-1 DNA binding activity.	J. Biol. Chem.	271(49)	31296-31305	1996	ZIP2,_,ZIP1,ZIP2A,ZIP1A	OsZIP2, OsZIP11, ZIP11 ,OsZIP-2b,OsZIP1,OsbZIP80, OsZIP-2a,OsbZIP86, bZIP86, OsZIP-1a, ZIP-1a
21660	8049366	Nelson,A.J., Doerner,P.W., Zhu,Q. and Lamb,C.J.	Isolation of a monocot 3-hydroxy-3-methylglutaryl coenzyme A reductase gene that is elicitor-inducible.	Plant Mol. Biol.	25(3)	401-412	1994	HMGRI	HMGR I, OsHMGRI, Hmg1, HMGR1, HMGR 1, OsHMGR1
21661	15280039	Nemoto,T., Cho,E.M., Okada,A., Okada,K., Otomo,K., Kanno,Y., Toyomasu,T., Mitsuhashi,W., Sassa,T., Minami,E., Shibuya,N., Nishiyama,M., Nojiri,H. and Yamane,H.	Stemar-13-ene synthase, a diterpene cyclase involved in the biosynthesis of the phytoalexin oryzalexin S in rice.	FEBS Lett.	571(1-3)	182-186	2004	CPS4,CPS2,KS8	OsCPS4, CYC1, OsCYC1, OsCyc1, cpsl3, OsCPSL3, OsCPSsyn, OsCyc1/OsCPS4, OsTPS15, Os-CPS4, TPS11, OsTPS11,OsCPS2, cps2, OsCPS2ent, CYC2, OsCyc2, OsCYC2, OsCPSL1, cpsl1, OsCyc2/OsCPS2, OsTPS7, Os-CPS2, TPS13, OsTPS13,OsKS8, KS8, KSL8, OsKSL8, DTC2, OsDTC2, OsDTC2/OsKS8, OsTPS32, TPS17, OsTPS17, KSL11, OsKSL11
21662	8148649	Nieto-Sotelo,J., Ichida,A. and Quail,P.H.	PF1: an A-T hook-containing DNA binding protein from rice that interacts with a functionally defined d(AT)-rich element in the oat phytochrome A3 gene promoter.	Plant Cell	6(2)	287-301	1994	_	Os-PF1, PF1
21663	8062823	Ninnemann,O., Jauniaux,J.C. and Frommer,W.B.	Identification of a high affinity NH4+ transporter from plants.	EMBO J.	13(15)	3464-3471	1994	AMT1;1	OsAMT1;1, OsAMT1:1, OsAMT1, AMT1-1, AMT1, OsAMT1p, OsAMT1-1, Osamt1-1, "OsAMT1,1", OsAMT1.1, AMT1.1, FCO12
21664	8388748	Nishi,R., Hashimoto,H., Kidou,S., Uchimiya,H. and Kato,A.	Isolation and characterization of a rice cDNA which encodes a ubiquitin protein and a 52 amino acid extension protein.	Plant Mol. Biol.	22(1)	159-161	1993	_,RUBI3	ZIURP1, Ub-CEP52-1,rubi3, UBQ3
21665	8218399	Nishi,R., Hashimoto,H., Uchimiya,H. and Kato,A.	The primary structure of two proteins from the small ribosomal subunit of rice.	Biochim. Biophys. Acta	1216(1)	113-114	1993	RPS20,RPS21	rps20,rps21
21666	8373808	Nishi,R., Kidou,S., Uchimiya,H. and Kato,A.	Isolation and characterization of a rice cDNA which encodes the eukaryotic initiation factor 4A.	Biochim. Biophys. Acta	1174(3)	293-294	1993	EIF4A1	eIF-4a, EIF4A, OseIF4A, eIF4A1, elF-4A, eIF4A-1, OsRH4
21667	8218398	Nishi,R., Kidou,S., Uchimiya,H. and Kato,A.	The primary structure of two proteins from the large ribosomal subunit of rice.	Biochim. Biophys. Acta	1216(1)	110-112	1993	RPL7A,RPL3A	OsRPL7A,OsRPL3A, ARP1, ARP3
21668	12000455	Nishimura,A., Ito,M., Kamiya,N., Sato,Y. and Matsuoka,M.	OsPNH1 regulates leaf development and maintenance of the shoot apical meristem in rice.	Plant J.	30(2)	189-201	2002	AGO1C,PNH1	OsAGO1c, OsAGO1, AGO1, AGO1c,OsPNH1
21670	7901749	Nishizawa,Y., Kishimoto,N., Saito,A. and Hibi,T.	Sequence variation, differential expression and chromosomal location of rice chitinase genes.	Mol. Gen. Genet.	241(1-2)	1-10	1993	CHT2,CHT3,CHT1	Cht2*, Cht2, RC7, OsChia1b, Chia1b, CHIT17, OsCHIT17,Cht3*, Cht3, Cht-3, CH6, OsChia1c, CHI7, OsCHI11, CHI11, OsPR3, PR3,Cht1*(Chi1), Ch16, Cht1, CHT-1, CH16, RC24, OsChia1a, OsChia1, Chi1, Cht1*, Chi-1, Cht-1, Cht1, RCC1, OsCht-1, PR3, OsPR3
21671	9339541	Noma,K., Nakajima,R., Ohtsubo,H. and Ohtsubo,E.	RIRE1, a retrotransposon from wild rice Oryza australiensis.	Genes Genet. Syst.	72(3)	131-140	1997	RIRE1	RIRE1, Osr11, Rire1
21672	15031413	Nonomura,K., Nakano,M., Fukuda,T., Eiguchi,M., Miyao,A., Hirochika,H. and Kurata,N.	The Novel Gene HOMOLOGOUS PAIRING ABERRATION IN RICE MEIOSIS1 of Rice Encodes a Putative Coiled-Coil Protein Required for Homologous Chromosome Pairing in Meiosis.	Plant Cell	16(4)	1008-1020	2004	PAIR1	Pair1, OsPAIR1
21673	16410547	Nonomura,K., Nakano,M., Eiguchi,M., Suzuki,T. and Kurata,N.	PAIR2 is essential for homologous chromosome synapsis in rice meiosis I.	J. Cell Sci.	119(PT 2)	217-225	2006	PAIR2	Pair2, OsPAIR2, OsASY1
21674	12897248	Nonomura,K.I., Miyoshi,K., Eiguchi,M., Suzuki,T., Miyao,A., Hirochika,H. and Kurata,N.	The MSP1 Gene Is Necessary to Restrict the Number of Cells Entering into Male and Female Sporogenesis and to Initiate Anther Wall Formation in Rice.	Plant Cell	15(8)	1728-1739	2003	MSP1	Msp1, OsMSP1, OsTMS15, TMS15
21675	8722567	Nozue,F., Umeda,M., Nagamura,Y., Minobe,Y. and Uchimiya,H.	Characterization of cDNA encoding for phosphoglucose isomerase of rice (Oryza sativa L.).	DNA Seq.	6(3)	127-135	1996	PGI1,PGI2	Pgi1(Pgia), Pgia, Pgi_1, Pgi1, GPI-A, PHI-A, Pgi-a, PGI-a,Pgi2(Pgib), Pgib, Pgi_2, Pgi2, GPI-B, PGI-B, PHI-B, Pgi-b, PGI-b, SIS, OsSIS, OsPGI2
21676	2370848	O'Neill,S.D., Kumagai,M.H., Majumdar,A., Huang,N., Sutliff,T.D. and Rodriguez,R.L.	The alpha-amylase genes in Oryza sativa: characterization of cDNA clones and mRNA expression during seed germination.	Mol. Gen. Genet.	221(2)	235-244	1990	AMY1A	Amy1A/C*(RAmy1A/C), alpha Amy7, AMY1.1, Amy1A, RAmy1A/C, Amy1A/C*, Amy1, Amy1A_C, OsAmy1A, alphaAmy7-C, RAmy1A, AmyI-1, OsAmyI-1, OsRamy1A
21677	10713441	Ogawa,M., Kusano,T., Katsumi,M. and Sano,H.	Rice gibberellin-insensitive gene homolog, OsGAI, encodes a nuclear-localized protein capable of gene activation at transcriptional level.	Gene	245(1)	21-29	2000	SLR1	slr1-1, slr1, slr, GAI, OsGAI, OsSLR1, Os SLR1, OsRGA1, OsGRAS-18, OsGRAS-18, GRAS-18, GRAS18, SLR-1
21678	15527966	Oguchi,K., Tamura,K. and Takahashi,H.	Characterization of Oryza sativa telomerase reverse transcriptase and possible role of its phosphorylation in the control of telomerase activity.	Gene	342(1)	57-66	2004	TERT	OsTERT
21679	11470506	Oguchi,S., Sassa,H. and Hirano,H.	OsPAA2, a distinct alpha 1 subunit gene for the 20S proteasome in rice (Oryza sativa L.).	Gene	272(1-2)	19-23	2001	_,_	OsPAA1, PAA1,OsPAA2, PAA2
21680	16202241	Oh,S.H., Choi,W.G., Lee,I.T. and Yun,S.J.	Cloning and characterization of a rice cDNA encoding glutamate decarboxylase.	J. Biochem. Mol. Biol.	38(5)	595-601	2005	GAD2,GAD1	OsGAD2,OsGAD1, GDC
21681	10778756	Ohba,H., Steward,N., Kawasaki,S., Berberich,T., Ikeda,Y., Koizumi,N., Kusano,T. and Sano,H.	Diverse response of rice and maize genes encoding homologs of WPK4, an SNF1-related protein kinase from wheat, to light, nutrients, low temperature and cytokinins.	Mol. Gen. Genet.	263(2)	359-366	2000	CBL6,CBL3,CBL5,SOS3,CBL7,CBL2,PK7,PK4,CBL8,CBL1	OsCBL6,OsCBL3,OsCBL5,CBL4, OsCBL4, OsSOS3,OsCBL7,OsCBL2,OsPK7, OsPK07, OsCIPK12, CIPK12, OsSnRK3.6, SnRK3.6,OsCIPK19, OsPK4, OsPK04, Os-CIPK19, CIPK19, OsSnRK3.20, SnRK3.20,OsCBL8,OsCBL1, Os-CBL1
21682	8685273	Ohmori,K., Doyama,N. and Ida,S.	Molecular cloning of a rice leaf ferredoxin cDNA (Accession No. D30763). (PGR 96-025)	Plant Physiol.	111(1)	348	1996	_	Fd1, OsFd1, ADI1, OsADI1
21683	1597177	Ohta,H., Shirano,Y., Tanaka,K., Morita,Y. and Shibata,D.	cDNA cloning of rice lipoxygenase L-2 and characterization using an active enzyme expressed from the cDNA in Escherichia coli.	Eur. J. Biochem.	206(2)	331-336	1992	LOX-L2	OsLOX-L2, LOX1.1, LOX L-2, LOX-2, OsLOX2, LOX2
21684	11487705	Ohta,M., Matsui,K., Hiratsu,K., Shinshi,H. and Ohme-Takagi,M.	Repression domains of class II ERF transcriptional repressors share an essential motif for active repression.	Plant Cell	13(8)	1959-1968	2001	ERF3	AP37, OsAP37, OsERF3, OsERF#075, OsERF075, OsERF75, ERF75, AP2/EREBP#004, AP2/EREBP4, OsBIERF2, BIERF2, DLN23, OsDLN23
21685	11250078	Ohtsu,K., Nakazono,M., Tsutsumi,N. and Hirai,A.	Characterization and expression of the genes for cytochrome c oxidase subunit VIb (COX6b) from rice and Arabidopsis thaliana.	Gene	264(2)	233-239	2001	_,_	OsCOX6b1, COX6b1, OsCOX6b-1, COX6b-1,OsCOX6b2, COX6b2, OsCOX6b-2, COX6b-2
21686	16208489	Ohtsu,K., Hirano,H.Y., Tsutsumi,N., Hirai,A. and Nakazono,M.	Anaconda, a new class of transposon belonging to the Mu superfamily, has diversified by acquiring host genes during rice evolution.	Molecular Genetics & Genomics (Molecular General Genetics up to 2001)	274(6)	606-615	2005	ANACB14	AnacB14
21687	10586517	Ohtsubo,H., Kumekawa,N. and Ohtsubo,E.	RIRE2, a novel gypsy-type retrotransposon from rice.	Genes Genet. Syst.	74(3)	83-91	1999	_,_,_,_,_,RIRE8B,RIRE8A,RIRE3,RIRE2	GAG-POL, orf1,GAG-POL, orf2,orf3, orf3',orf4, orf4',orf5, orf5',RIRE8B,RIRE8A,RIRE3,RIRE2, Osr26, Rire2, Retrosat2
21688	15969500	Ohtsubo,S., Kobayashi,H., Noro,W., Taniguchi,M. and Saitoh,E.	Molecular Cloning and Characterization of Oryzacystatin-III, a Novel Member of Phytocystatin in Rice (Oryza sativa L. japonica).	J. Agric. Food Chem.	53(13)	5218-5224	2005	OC1,OC2	Oc1*, Oc1, OC-I, SPOC-I, OsCP1, Oc, OCI, OsCYS1, OsPR6b, PR6b,Oc2*, Oc2, OC-II, OC-III, OCII, OsCYS2
21689	1377969	Okagaki,R.J.	Nucleotide sequence of a long cDNA from the rice waxy gene.	Plant Mol. Biol.	19(3)	513-516	1992	WX1	wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx
21690	2745459	Okita,T.W., Hwang,Y.S., Hnilo,J., Kim,W.T., Aryan,A.P., Larson,R. and Krishnan,H.B.	Structure and expression of the rice glutelin multigene family.	J. Biol. Chem.	264(21)	12573-12581	1989	GLU3,GLU1,GLU2	Glu3*(Gt3), Gt3, Glu3, ,Glu1(Srp1, Gt2), Srp, Gt2, Glu1,Glu2*(Gt1), Gt1, Glu2
21691	12040100	Okushima,Y., Koizumi,N., Yamaguchi,Y., Kimata,Y., Kohno,K. and Sano,H.	Isolation and Characterization of a Putative Transducer of Endoplasmic Reticulum Stress in Oryza sativa.	Plant Cell Physiol.	43(5)	532-539	2002	IRE1	OsIRE1, OsIre1
21692	12399401	Olsen,K.M. and Purugganan,M.D.	Molecular Evidence on the Origin and Evolution of Glutinous Rice.	Genetics	162(2)	941-950	2002	GR2,WX1	OsGR2, RGRC2, OsGR, OsGR3, OsRGRC2,wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx
21693	16164597	Onai,K. and Ishiura,M.	PHYTOCLOCK 1 encoding a novel GARP protein essential for the Arabidopsis circadian clock.	Genes Cells	10(10)	963-972	2005	PCL1	OsPCL1, OsLUX, LUX, OsLVP2, LVP2
21694	11133985	Onodera,Y., Suzuki,A., Wu,C., Washida,H. and Takaiwa,F.	A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif	J. Biol. Chem.	276(17)	14139-14152	2001	RISBZ1,RITA1,REB,RISBZ4,RISBZ5	OsbZIP58, bZIP58, OsEnS-92, OsSMF1, SMF1, OsRISBZ1, RISBZ1/bZIP58,OsbZIP20, bZIP20, RITA-1, RISBZ3,OsZIP33, RISBZ2, OsbZIP33,OsbZIP15,OsbZIP52, bZIP52
21695	7697296	Ookura,T., Wada,M., Sakakibara,Y., Jeong,K.H., Maruta,I., Kawamura,Y. and Kasamo,K.	Identification and characterization of a family of genes for the plasma membrane H(+)-ATPase of Oryza sativa L.	Plant Cell Physiol.	35(8)	1251-1256	1994	AHA2	OSA2, OsA2, osAHA2, AHA2, OsPMA2
21696	15388982	Otomo,K., Kanno,Y., Motegi,A., Kenmoku,H., Yamane,H., Mitsuhashi,W., Oikawa,H., Toshima,H., Itoh,H., Matsuoka,M., Sassa,T. and Toyomasu,T.	Diterpene cyclases responsible for the biosynthesis of phytoalexins, momilactones a, B, and oryzalexins a-f in rice.	Biosci. Biotechnol. Biochem.	68(9)	2001-2006	2004	KS4,KSL10	OsKS4, KS4, KSL4, OsKSL4, DTS2, OsDTS2, OsTPS16, TPS16, TPS8, OsTPS8,OsKSL10, KS10, OsKS10, OsTPS33, TPS33, TPS21, OsTPS21
21697	15341631	Otomo,K., Kenmoku,H., Oikawa,H., Konig,W.A., Toshima,H., Mitsuhashi,W., Yamane,H., Sassa,T. and Toyomasu,T.	Biological functions of ent- and syn-copalyl diphosphate synthases in rice: key enzymes for the branch point of gibberellin and phytoalexin biosynthesis.	Plant J.	39(6)	886-893	2004	CPS1,CPS4,CPS2	OsCPS1, OsCPS1ent, OsCPS, Os CPS1, OsTPS4, TPS4, TPS29, OsTPS29, OsCPS1-L, OsCPS1-S,OsCPS4, CYC1, OsCYC1, OsCyc1, cpsl3, OsCPSL3, OsCPSsyn, OsCyc1/OsCPS4, OsTPS15, Os-CPS4, TPS11, OsTPS11,OsCPS2, cps2, OsCPS2ent, CYC2, OsCyc2, OsCYC2, OsCPSL1, cpsl1, OsCyc2/OsCPS2, OsTPS7, Os-CPS2, TPS13, OsTPS13
21698	12242506	Panaud,O., Vitte,C., Hivert,J., Muzlak,S., Talag,J., Brar,D. and Sarr,A.	Characterization of transposable elements in the genome of rice (Oryza sativa L.) using Representational Difference Analysis (RDA).	Molecular Genetics & Genomics (Molecular General Genetics up to 2001)	268(1)	113-121	2002	RIRE3,RIRE8,_,_,_,_,_,RIRE2	RIRE3,RIRE8, Osr33, Rire8,Retrosat1,hipa,houba,hopi,dagul,RIRE2, Osr26, Rire2, Retrosat2
21700	12569425	Panstruga,R.	Molecular phylogeny and evolution of the plant-specific seven- transmembrane MLO family	J. Mol. Evol.	56(1)	77-88	2003	MLO_,MLO_,MLO_	OsMLO6, OsMLO1, OsMlo1, Mlo, OsMlo-1, Mlo1, MLO6,OsMLO2, OsMLO3, OsMlo2, MLO2, Mlo2, Mlo, MLO3,OsMLO4, OsMLO1, MLO1
21701	11911477	Park,H.Y., Pan,C.H., So,M.Y., Ah,J.H., Jo,D.H. and Kim,S.I.	Purification, characterization, and cDNA cloning of rice class III chitinase.	Mol. Cells	13(1)	69-76	2002	_	RCB4
21704	15232225	Park,Y.J., Dixit,A., Yoo,J.W. and Bennetzen,J.	Further evidence of microcolinearity between barley and rice genomes at two orthologous regions.	Mol. Cells	17(3)	492-502	2004		
21705	12271140	Paszkowski,U., Kroken,S., Roux,C. and Briggs,S.P.	Rice phosphate transporters include an evolutionarily divergent gene specifically activated in arbuscular mycorrhizal symbiosis.	Proc. Natl. Acad. Sci. U.S.A.	99(20)	13324-13329	2002	PT10,PT1,PT5,PT7,PT2,PT4,PT6,PT11,PT9,PT12,PT13,PT3,PT8	OsPT10, PHT1-10, OsPht1;10,OsPT1, PHT1-1, OsPht1;1, Pht1;1, OsPHT1;1, PHT1;1,OsPT5, OsPht1;5, Pht1;5, PHT1-5,OsPT7, PHT1-7, OsPht1;7,OsPT2, PTH1-2, OsPht1;2, PHT1;2, OsPHT1;2,OsPT4, PHT1-4, OsPht1;4, PHT1-2, PHT1;4, OsPHT1;4,OsPT6, PHT1-6, OsPht1;6, OsLPT6:1, OsLPT1, OsPT6:1, Pht1;6, LPT6:1, LPT1, PT6:1,OsPT11, PHT1-11, OsPht1;11, ORYsa;PHT1;11,OsPT9, PHT1-9, OsPht1;9,OsPT12, PHT1-12, OsPht1;12,OsPT13, PHT1-13, OsPht1;13, ORYsa;PHT1;13,OsPT3, PHT1-3, OsPht1;3, OjPT1, PHT1;3,OsPT8, PHT1-8, OsPht1;8, Pht1;8, PHT1;8, OsPHT1;8
21706	15233790	Peng,R., Yao,Q., Xiong,A., Fan,H., Li,X., Peng,Y., Cheng,Z.M. and Li,Y.	A new rice zinc-finger protein binds to the O2S box of the alpha-amylase gene promoter.	Eur. J. Biochem.	271(14)	2949-2955	2004	_	RAMY
21707	7508918	Peng,Y.L., Shirano,Y., Ohta,H., Hibino,T., Tanaka,K. and Shibata,D.	A novel lipoxygenase from rice. Primary structure and specific expression upon incompatible infection with rice blast fungus.	J. Biol. Chem.	269(5)	3755-3761	1994	_,LOX-RLL	Lox2:Os:1, OsLOX9, LOX9, OsLOX8, LOX8, OsLOX2, LOX2, OsRLL, OsHI-LOX, HI-LOX, RLL2 LOX, RLL2, Lox2osPil, OsLOX2;1, LOX2;1, OsLOX1, OsLOX7, LOX7,OsLOX-RLL
21708	7493934	Peng,Z. and Verma,D.P.	A rice HAL2-like gene encodes a Ca(2+)-sensitive 3'(2'),5'-diphosphonucleoside 3'(2')-phosphohydrolase and complements yeast met22 and Escherichia coli cysQ mutations.	J. Biol. Chem.	270(49)	29105-29110	1995	_	RHL
21709	3026911	Peng,Z.G. and Wu,R.	A simple and rapid nucleotide sequencing strategy and its application in analyzing a rice histone 3 gene.	Gene	45(3)	247-252	1986	_	H3
21710	10080693	Postma-Haarsma,A.D., Verwoert,I.I., Stronk,O.P., Koster,J., Lamers,G.E., Hoge,J.H. and Meijer,A.H.	Characterization of the KNOX class homeobox genes Oskn2 and Oskn3 identified in a collection of cDNA libraries covering the early stages of rice embryogenesis.	Plant Mol. Biol.	39(2)	257-271	1999	OSH15,OSKN2	OSH15, OsH15, OSKN3, Oskn3, HOS3, D6, d6, OSH15/Oskn3, HB253, H15, OsKNOX3, KNOX3,OsKn2, OsH71, HOS9, OSH71, OSH71/Oskn2
21711	12676326	Prasad,K., Kushalappa,K. and Vijayraghavan,U.	Mechanism underlying regulated expression of RFL, a conserved transcription factor, in the developing rice inflorescence.	Mech. Dev.	120(4)	491-502	2003	RFL	RFL, OSL, FL, APO2, APO2/RFL, SSC, SSC/RFL/APO2, OsRFL, OsFL, OsAPO2, OsSSC
21712	1620614	Prestle,J., Schonfelder,M., Adam,G. and Mundry,K.W.	Type 1 ribosome-inactivating proteins depurinate plant 25S rRNA without species specificity.	Nucleic Acids Res.	20(12)	3179-3182	1992	_	
21713	15542489	Prisic,S., Xu,M., Wilderman,P.R. and Peters,R.J.	Rice Contains Two Disparate ent-Copalyl Diphosphate Synthases with Distinct Metabolic Functions.	Plant Physiol.	136(4)	4228-4236	2004	CPS2,CPS1	OsCPS2, cps2, OsCPS2ent, CYC2, OsCyc2, OsCYC2, OsCPSL1, cpsl1, OsCyc2/OsCPS2, OsTPS7, Os-CPS2, TPS13, OsTPS13,OsCPS1, OsCPS1ent, OsCPS, Os CPS1, OsTPS4, TPS4, TPS29, OsTPS29, OsCPS1-L, OsCPS1-S
21714	10341448	Pysh,L.D., Wysocka-Diller,J.W., Camilleri,C., Bouchez,D. and Benfey,P.N.	The GRAS gene family in Arabidopsis: sequence characterization and basic expression analysis of the SCARECROW-LIKE genes.	Plant J.	18(1)	111-119	1999	HAM1	OsSCL1, SCL1, OsHAM1, OsGRAS-9, OsGRAS-9, GRAS-9, GRAS9, OsGRAS8, GRAS8, SCL6-II, OsSCL6-II
21715	15088147	Qi,Y., Yamauchi,Y., Ling,J., Kawano,N., Li,D. and Tanaka,K.	Cloning of a putative monogalactosyldiacylglycerol synthase gene from rice (Oryza sativa L.) plants and its expression in response to submergence and other stresses.	Planta.	219(3)	450-458	2004	MGD2	OsMGD, MGD, OsMGD2, OsMGDG3, MGDG3
21716	15645304	Qi,Y., Kawano,N., Yamauchi,Y., Ling,J., Li,D. and Tanaka,K.	Identification and cloning of a submergence-induced gene OsGGT (glycogenin glucosyltransferase) from rice (Oryza sativa L.) by suppression subtractive hybridization.	Planta.	221(3)	437-445	2005	GGT	OsGGT, OsPGSIP-C1, PGSIP-C1
21718		Qiu,Y., Jing,S., Fu,J., Li,L. and Yu,D.	Cloning and analysis of expression profile of 13 WRKY genes in rice	Chin. Sci. Bull.	49	2159-2168	2004	WRKY9,WRKY27,WRKY34,WRKY98,WRKY50,WRKY102,WRKY78,WRKY15,WRKY60,WRKY53,WRKY104,WRKY67,WRKY66,WRKY11,WRKY20,WRKY87,WRKY69,WRKY47,WRKY45,WRKY46,WRKY54,WRKY84,WRKY82,WRKY43,WRKY72,WRKY75,WRKY94,WRKY3,WRKY30,WRKY48,WRKY77,SGSD3,WRKY26,WRKY32,WRKY39,WRKY56,WRKY22,WRKY68,WRKY71,WRKY95,WRKY74,WRKY41,WRKY24,WRKY6,WRKY2,WRKY76,WRKY64,WRKY97,WRKY4,WRKY89,WRKY88,WRKY65,WRKY57,WRKY7,WRKY13,WRKY61,WRKY16,WRKY28,WRKY70,WRKY90,WRKY5,WRKY83,WRKY23,WRKY33,WRKY19,WRKY81,WRKY42,WRKY86,WRKY10,WRKY18,WRKY29,WRKY85,WRKY96,WRKY99,WRKY1,WRKY40,WRKY49,WRKY58,WRKY51,WRKY8,WRKY73,WRKY62,WRKY55,WRKY107,WRKY25,WRKY35,WRKY31,WRKY12,WRKY14,WRKY37,WRKY52,WRKY80,WRKY79,WRKY21,WRKY17	OsWRKY9,OsWRKY27,OsWRKY34,OsWRKY98,OsWRKY50,OsWRKY102,OsWRKY78,OsWRKY15,OsWRKY60,OsWRKY53, WRKY-53,OsWRKY104, CRPG32, OsCRPG32,OsWRKY67,OsWRKY66,OsWRKY11, Dlf1, OsWRKY11.1, OsWRKY11.2,OsWRKY20,OsWRKY87, OsSUSIBA2-like,OsWRKY69,OsWRKY47,OsWRKY45, OsWRKY45-1, OsWRKY45-2, WRKY45-1, WRKY45-2,OsWRKY46, WRKY91, OsWRKY91,OsWRKY54,OsWRKY84,OsWRKY82,OsWRKY43,OsWRKY72, WRKY-72,OsWRKY75,OsWRKY94,OsWRKY3 ,OsWRKY30,OsWRKY48,OsWRKY77, WRKY-77,OsWRKY36, WRKY36, OsSGSD3,OsWRKY26, OsWRKY59, DLN19, OsDLN19,OsWRKY32,OsWRKY39,OsWRKY56,OsWRKY22,OsWRKY68,OsWRKY71, WRKY-71,OsWRKY95,OsWRKY74,OsWRKY41, WRKY63, OsWRKY63,OsWRKY24,OsWRKY6, WRKY-6, DLN103, OsDLN103,OsWRKY2,OsWRKY76, OsWRKY76.1, OsWRKY76.2, OsWRKY76.3,OsWRKY64,OsWRKY97,OsWRKY4, WRKY122, OsWRKY122,OsWRKY89,OsWRKY88,OsWRKY65,OsWRKY57,OsWRKY7,OsWRKY13,OsWRKY61, OsWRKY103, WRKY103,OsWRKY16,OsWRKY28, DLN170, OsDLN170,OsWRKY70,OsWRKY90,OsWRKY5 ,OsWRKY83,OsWRKY23,OsWRKY33,OsWRKY19,OsWRKY81, OsWRKY33,OsWRKY42, WRKY-42,OsWRKY86, OsaLeg5, Leg5,OsWRKY10,OsWRKY18,OsWRKY29,OsWRKY85,OsWRKY96,OsWRKY99,OsWRKY1, OsWRKY1v2,OsWRKY40,OsWRKY49,OsWRKY58,OsWRKY51,OsWRKY8,OsWRKY73,OsWRKY62, OsWRKY62.1, OsWRKY62.2, XB10, OsWRKY62-1, OsWRKY62-2,OsWRKY55,OsWRKY107,OsWRKY25, OsWRKY44, WRKY44,OsWRKY35,OsWRKY31,OsWRKY12,OsWRKY14,OsWRKY37,OsWRKY52,OsWRKY80,OsWRKY79, WRKY-79,OsWRKY21,OsWRKY17
21719	12972663	Qu,L.J., Chen,J., Liu,M., Pan,N., Okamoto,H., Lin,Z., Li,C., Li,D., Wang,J., Zhu,G., Zhao,X., Chen,X., Gu,H. and Chen,Z.	Molecular cloning and functional analysis of a novel type of Bowman-Birk inhibitor gene family in rice.	Plant Physiol.	133(2)	560-570	2003	_,_,RBBI2-0,RBBI2-3,RBBI3-2,RBBI2-4,RBBI2-2,RBBI3-3,RBBI2-1,RBBI3-1	Oswip1-2,Oswip1-1,RBBI2-0,RBBI2-3,OsRBBI3-2, BBTI3, OsBBTI3,OsRBBI2-4,RBBI2-2,RBBI3-3, OsBBPI, BBPI, IBP1.2, OsIBP1.2, OsBBTI5, BBTI5,RBBI2-1, OsBBTI2, BBTI2,RBBI3-1, OsBBTI4, BBTI4, IBP1.1, RBBTI4, APIP4, OsAPIP4
21720		Qu,L.Q. and Takaiwa,F.	Evaluation of tissue specificity and expression strength of rice seed component gene promoters in transgenic rice	Plant Biotechnol J.	2(2)	113-125	2004	REG2,SBE1,GLU7,OLE18,GLUB4,GLT1,GLB1,CYSP13,GLUB1,CYSR10,FLO4,PRO16.2,AGPS2,ALAAT	REG-2,sbe1, Rbe1. Sbe1, sbe1*(QEI), RBE1, BEI, SBE I, QEI, OsBEI, BE1, OsSBE1, OsSBEI, SBEI,Glu7*(GluB2), Glu7, GluB2, GLUB2, GLUB-2, GluB-2, GluB-7, GLUB7,ole18, OsOLE18,GluB4, GluB-4, GluB-5, GluB5, GluB-4/5,OsGLT1, OsNADH-GOGAT1, NADH-GOGAT1, OsNADH-GOGAT, GOGAT, NADH-GOGAT, OsGOGAT1, GOGAT1, OsGLU1,glb1(t)*, glb1(t), glb1, alpha-Glb, Glb-1, OsGlb1, Glb1, Glb, OsEnS-77,CysP13, OsCYSP13, CpP13, PG5a, Prol-06, pro13b.11, OsPRO13B.11, PROLM9, OsPROLM9,GluB1, GluB1-A, GluB-1a, GluB-1, OsGluB1, GluB-1b, OsGluB-1b, GLUB1B,Prol-01, CysR10, OsCysR10, crP10, pro10.1, Ospro10.1,FLO4-4, flo4, flo4-2, flo4-3, ppdk, OsPPDK, PPDK1, CPDK1, PPDKB, OsPPDKB, cyOsPPDKB, OsPBDK, PBDK, osppdkb, PPD, cyPPDK, chPPDKB, chOsPPDKB,Prol-17, OsEnS-88, pro16.2, OsPRO16.2, PROLM24,OsAGPS2a, AGPS2A, AGPS2B, OsAGPS2, osagps2, APS2, APS2a, APS2b, AGPS2a, APGS2b, OsAGPS2b, AGPP, GAS8, OsAPS2, OsAPS2a, OsAPS2b,alaAT, ALT-1, OsAlaAT1, AlaAT1
21721	8964022	Qun,W. and Rong-Xiang,F.	Structure and expression of a rice hsp 70 cognate gene	Sci. China, C, Life Sciences	39	291-299	1996	_	HSP70, hsp70, OsHSP70 , OsMed37_8, Med37_8 
21723	11347904	Raghuvanshi,S., Kelkar,A., Khurana,J.P. and Tyagi,A.K.	Isolation and molecular characterization of the COP1 gene homolog from rice, Oryza sativa L. subsp. Indica var. Pusa Basmati 1.	DNA Res.	8(2)	73-79	2001	PPS	OsWD40-55, OsCOP1, COP1, YEL, OsYEL, OsPPS, COP1-1, OsCOP1-1,  OsRING347, RING347
21724	12834068	Rahman,S., Nakamura,Y., Li,Z., Clarke,B., Fujita,N., Mukai,Y., Yamamoto,M., Regina,A., Tan,Z., Kawasaki,S. and Morell,M.	The sugary-type isoamylase gene from rice and Aegilops tauschii: characterization and comparison with maize and Arabidopsis	Genome	46(3)	496-506	2003	PHS8	ISA1, OsISA1, ISA, OsISA, PHS8/ISA1, OsPHS8, ISA I, OsISA I, ISAI, OsISAI
21726	12970480	Ramesh,S., Shin,R., Eide,D.J. and Schachtman,D.P.	Differential metal selectivity and gene expression of two zinc transporters from rice	Plant Physiol.	133(1)	126-134	2003	ZIP3,ZIP2,ZIP1	OsZIP3,OsZIP2, OsZIP11, ZIP11 ,OsZIP1
21727	9878846	Reddy,P.M., Kouchi,H. and Ladha,J.K.	Isolation, analysis and expression of homologues of the soybean early nodulin gene GmENOD93 (GmN93) from rice.	Biochim. Biophys. Acta	1443(3)	386-392	1998	ENOD93B,ENOD93A	OsENOD93b,OsENOD93a
21730	2102841	Reece,K.S., McElroy,D. and Wu,R.	Genomic nucleotide sequence of four rice (Oryza sativa) actin genes.	Plant Mol. Biol.	14(4)	621-624	1990	ACT1,_,AC7,_	act1, AC1, RAC1, RAc1, ACT11, OsACT1,RAc3,RAc7, OsAc7,RAc2
21731	8499615	Reimmann,C. and Dudler,R.	Circadian rhythmicity in the expression of a novel light-regulated rice gene.	Plant Mol. Biol.	22(1)	165-170	1993	LIR1	Lir1, OsLIR1, Os-LIR1
21732	8310049	Reimmann,C. and Dudler,R.	cDNA cloning and sequence analysis of a pathogen-induced thaumatin-like protein from rice (Oryza sativa).	Plant Physiol.	101(3)	1113-1114	1993	PR5	OsPR5, Pir2, PR-5, PR5-1
21733	16653172	Reimmann,C., Ringli,C. and Dudler,R.	Complementary DNA cloning and sequencing of a pathogen-induced putative peroxidase from rice.	Plant Physiol.	100(3)	1611-1612	1992	POX22.3	POX22.3, OSPER, OsPOX, POX, Pir3, prx111, POX22, OsPOX1, POX1, OsPOX22.3, OsPR9, PR9
21735	16155566	Ren,Z.H., Gao,J.P., Li,L.G., Cai,X.L., Huang,W., Chao,D.Y., Zhu,M.Z., Wang,Z.Y., Luan,S. and Lin,H.X.	A rice quantitative trait locus for salt tolerance encodes a sodium transporter.	Nat Genet	37(10)	1141-1146	2005	SKC1	OsHKT8, HKT8, Os-HKT1;5, OsHKT1;5, HKT1;5, SKC1, qSKC-1(t), OsSKC1
21736	9232881	Rivoal,J., Thind,S., Pradet,A. and Ricard,B.	Differential induction of pyruvate decarboxylase subunits and transcripts in anoxic rice seedlings.	Plant Physiol.	114(3)	1021-1029	1997	PDC4	pdc4
21737	9858757	Romero,G.O., Simmons,C., Yaneshita,M., Doan,M., Thomas,B.R. and Rodriguez,R.L.	Characterization of rice endo-beta-glucanase genes (Gns2-Gns14) defines a new subgroup within the gene family.	Gene	223(1-2)	311-320	1998	GNS14,GNS4,GNS2,GNS3,GNS8,GNS7,GNS9,GNS10,GNS12,GNS13,GNS6,GNS5,GNS11	Gns14, OsGns14,OsPR2, PR2, Gns4, OsGns4, OsGLN2,Gns2, OsGns2,Gns3, OsGns3,Gns8, OsGns8,Gns7, OsGns7,Gns9, OsGns9, OsPR8a, PR8a, OsBGL12, BGL12, BG12, OsBG12,Gns10, OsGns10,Gns12, OsGns12,Gns13, OsGns13,Gns6, OsGns6, OsPR2, PR2,Gns5, OsGns5,Gns11, OsGns11, OsBGL3, BGL3
21738	10675523	Roosens,N., F., Jacobs,M. and Homble,F.	Characterization of a cDNA encoding a rice mitochondrial voltage-dependent anion channel and its gene expression studied upon plant development and osmotic stress.	Biochim. Biophys. Acta	1463(2)	470-476	2000	VDAC1	OSVDAC1, osvdac1, OsVDAC1
21739	11340194	Rossini,L., Cribb,L., Martin,D.J. and Langdale,J.A.	The maize golden2 gene defines a novel class of transcriptional regulators in plants.	Plant Cell	13(5)	1231-1244	2001	GLK1,GLK2	OsGLK1, OsGlk1, GLK1,OsGLK2, OsGlk2
21740		Rubio,F., Santa-Maria,G.E. and Rodriguez-Navarro,A.	Cloning of Arabidopsis and barley cDNAs encoding HAK potassium transporters in root and shoot cells	Physiol. Plantarum	109(1)	34-43	2000	HAK4	OsHAK4
21741	2103460	S., Hensgens,L.A. and Schilperoort,R.A.	Structure and expression of a light-inducible shoot-specific rice gene.	Plant Mol. Biol.	15(3)	399-406	1990	PSAH	PsaH, GOS5, OsPSAH, OsGOS5
21742	10929125	Saijo,Y., Hata,S., Kyozuka,J., Shimamoto,K. and Izui,K.	Over-expression of a single Ca2+-dependent protein kinase confers both cold and salt/drought tolerance on rice plants.	Plant J.	23(3)	319-327	2000	LEA3-1,SALT,WSI18,RAB16A,RAB16B,CDPK13,CDPK7	OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3, OsLEA3A, LEA3A,salT*(sal1), SalT1*, sal1, Sal1, SALT, ML, SalT, OsSalT, OsJRL, JRL, Osl43, OsL43, OsMBL1, MBL1, OsJRL01, JRL01, OsJRL1, JRL1,OsLEA14, OsLEA14a, OsLEA14b, wsi18, pwsi18, OsWsi18, OsLEA14/WSI18,Rab16A, rab21, RAB21, OsRab21, OsRAB21, OsRAB-21, OsRab16A, OsLEA29, rab16A, OsRAB16A,rab21, OsLEA28, OsRAB16D, OsRab16d, Rab16d, OsRAB16b, XERO1, OsXERO1, OsRD22, RD22,OsCDPK13, OsCPK13, OsCDPK7, CDPK7, OsCPK13-1, OsCPK13-2,OsCDPK7, OsCPK7, CDPK1, OsCDPK11, CDPK12, OsCDPK13
21743	15514070	Saitoh,K., Onishi,K., Mikami,I., Thidar,K. and Sano,Y.	Allelic Diversification at the C (OsC1) Locus of Wild and Cultivated Rice: Nucleotide Changes Associated With Phenotypes	Genetics	168(2)	997-1007	2004	C	C, Cp, OsC1, Os-C1, C1, OsMyb6, Myb6, OsPL6, PL6, OsGL1E, GL1E, Os2R_MYB63, 2R_MYB63, OsC1PLSr, C1PLSr
21744	8843945	Sakakibara,Y., Kobayashi,H. and Kasamo,K.	Isolation and characterization of cDNAs encoding vacuolar H(+)-pyrophosphatase isoforms from rice (Oryza sativa L.).	Plant Mol. Biol.	31(5)	1029-1038	1996	OVP2,_	OsOVP2,OVP1
21745	9931464	Sakakibara,Y., Kasamo,K., Kobayashi,H., Kusakabe,I. and Kawasaki,S.	Identification of the gene structure and promoter region of H+-translocating inorganic pyrophosphatase in rice (Oryza sativa L. ).	Biochim. Biophys. Acta	1444(1)	117-124	1999	_	OVP1
21746	2577497	Sakamoto,A., Ogawa,M., Masumura,T., Shibata,D., Takeba,G., Tanaka,K. and Fujii,S.	Three cDNA sequences coding for glutamine synthetase polypeptides in Oryza sativa L.	Plant Mol. Biol.	13(5)	611-614	1989	GLN1;1,GS2,GLN1;2	OsGLN1;1, GS1, RGS28, OsGS1;1, GS1;1, OsGS, GS1, OsGS1, GLN1-1, OsGS1-1, GS1-1, GS1.1, OsGS1.1,OsGS2, GLN2, OsGLN2, RGS31, OsRGS31,OsGLN1;2, GSr, RGS8, OsGS1;2, GS1;2, GS1, OsGS1-2, GS1-2, OsGS1.2, GS1.2
21747	1623183	Sakamoto,A., Ohsuga,H. and Tanaka,K.	Nucleotide sequences of two cDNA clones encoding different Cu/Zn-superoxide dismutases expressed in developing rice seed (Oryza sativa L.).	Plant Mol. Biol.	19(2)	323-327	1992	SODCC2,SODCC1	Cu/Zn-SOD, Cu/Zn- SOD, OsCu-ZnSOD2, Cu-ZnSOD2, OsSODB, OsSOD3, SodCc2, Os SodCc2, sodB, OsSodB, RSODB, OssodCc1, OsCSD1.1, CSD1.1, OsCDS1, OsSOD3-CU/Zn, SOD3-CU/Zn, CuZnSOD2, Cu/ZnSOD2, OsCu/ZnSOD2, OsCSD1, CSD1, CuZnSOD1, OsCuZnSOD2, OsCSD4, CSD4, OsCSD3, CSD3, Cu/Zn-SOD3,sodCc1, SODCC.1, sodA, RSODA, OsSOD1, OsCSD2, OsSodA, SodCc2, OsSODA1, SODCc1-Cu/Zn, OsCu/Zn-SOD2, Cu/Zn-SOD2, OsCSD1.2, CSD1.2, OsSODCc1-Cu/Zn, SODCc1-Cu/Zn, CuZnSOD1, Cu/ZnSOD1, OsCu/ZnSOD1, OsCSD4, CDS4, CuZnSOD4, OsCuZnSOD1, OsCSD1, CSD1, OsSOD2
21748	1568478	Sakamoto,A., Okumura,T., Ohsuga,H. and Tanaka,K.	Genomic structure of the gene for copper/zinc-superoxide dismutase in rice.	FEBS Lett.	301(2)	185-189	1992	SODCC2	Cu/Zn-SOD, Cu/Zn- SOD, OsCu-ZnSOD2, Cu-ZnSOD2, OsSODB, OsSOD3, SodCc2, Os SodCc2, sodB, OsSodB, RSODB, OssodCc1, OsCSD1.1, CSD1.1, OsCDS1, OsSOD3-CU/Zn, SOD3-CU/Zn, CuZnSOD2, Cu/ZnSOD2, OsCu/ZnSOD2, OsCSD1, CSD1, CuZnSOD1, OsCuZnSOD2, OsCSD4, CSD4, OsCSD3, CSD3, Cu/Zn-SOD3
21749	8290649	Sakamoto,A., Nosaka,Y. and Tanaka,K.	Cloning and sequencing analysis of a complementary DNA for manganese-superoxide dismutase from rice (Oryza sativa L.).	Plant Physiol.	103(4)	1477-1478	1993	SODA1	SodA1, OsSODA1, Mn-SOD, Mn- SOD, OsMSD, MnSOD, OsMnSOD, MnSOD1, OsMnSOD1
21750	7724677	Sakamoto,A., Okumura,T., Kaminaka,H. and Tanaka,K.	Molecular cloning of the gene (SodCc1) that encodes a cytosolic copper/zinc-superoxide dismutase from rice (Oryza sativa L.).	Plant Physiol.	107(2)	651-652	1995	SODCC1	sodCc1, SODCC.1, sodA, RSODA, OsSOD1, OsCSD2, OsSodA, SodCc2, OsSODA1, SODCc1-Cu/Zn, OsCu/Zn-SOD2, Cu/Zn-SOD2, OsCSD1.2, CSD1.2, OsSODCc1-Cu/Zn, SODCc1-Cu/Zn, CuZnSOD1, Cu/ZnSOD1, OsCu/ZnSOD1, OsCSD4, CDS4, CuZnSOD4, OsCuZnSOD1, OsCSD1, CSD1, OsSOD2
21751	7821431	Sakamoto,A., Okumura,T., Kaminaka,H., Sumi,K. and Tanaka,K.	Structure and differential response to abscisic acid of two promoters for the cytosolic copper/zinc-superoxide dismutase genes, SodCc1 and SodCc2, in rice protoplasts.	FEBS Lett.	358(1)	62-66	1995	SODCC2,SODCC1	Cu/Zn-SOD, Cu/Zn- SOD, OsCu-ZnSOD2, Cu-ZnSOD2, OsSODB, OsSOD3, SodCc2, Os SodCc2, sodB, OsSodB, RSODB, OssodCc1, OsCSD1.1, CSD1.1, OsCDS1, OsSOD3-CU/Zn, SOD3-CU/Zn, CuZnSOD2, Cu/ZnSOD2, OsCu/ZnSOD2, OsCSD1, CSD1, CuZnSOD1, OsCuZnSOD2, OsCSD4, CSD4, OsCSD3, CSD3, Cu/Zn-SOD3,sodCc1, SODCC.1, sodA, RSODA, OsSOD1, OsCSD2, OsSodA, SodCc2, OsSODA1, SODCc1-Cu/Zn, OsCu/Zn-SOD2, Cu/Zn-SOD2, OsCSD1.2, CSD1.2, OsSODCc1-Cu/Zn, SODCc1-Cu/Zn, CuZnSOD1, Cu/ZnSOD1, OsCu/ZnSOD1, OsCSD4, CDS4, CuZnSOD4, OsCuZnSOD1, OsCSD1, CSD1, OsSOD2
21752	10487219	Sakamoto,K., Tada,Y., Yokozeki,Y., Akagi,H., Hayashi,N., Fujimura,T. and Ichikawa,N.	Chemical induction of disease resistance in rice is correlated with the expression of a gene encoding a nucleotide binding site and leucine-rich repeats.	Plant Mol. Biol.	40(5)	847-855	1999	RPR1	RPR1*, Rpr1-1, Rpr1, RPM1, OsRPM1, OsRSR1, RSR1
21753	1387558	Sakamoto,M., Shimada,H. and Fujimura,T.	Nucleotide sequence of a cDNA encoding a beta subunit of the mitochondrial ATPase from rice (Oryza sativa).	Plant Mol. Biol.	20(1)	171-174	1992	_	RMtATPb, atpB, AtpB 
21755	11244129	Sakamoto,T., Kobayashi,M., Itoh,H., Tagiri,A., Kayano,T., Tanaka,H., Iwahori,S. and Matsuoka,M.	Expression of a gibberellin 2-oxidase gene around the shoot apex is related to phase transition in rice.	Plant Physiol.	125(3)	1508-1516	2001	GA2OX1	OsGA2ox1, ga2ox-1, OsGA2ox-1, ga2ox, ga2ox 1, GA2ox1
21756	12362332	Salekdeh,G.H., Siopongco,J., Wade,L.J., Ghareyazie,B. and Bennett,J.	Proteomic analysis of rice leaves during drought stress and recovery.	Proteomics	2(9)	1131-1145	2002	RCA,_,RNS4	OsRcaII, rca, rcaII, OsRcaI, RCAI, ME137, OsRCA1, RCA, RCAalpha, OsRCAalpha, OsRCAbeta,IRL,OsRNS4, OsRRP, RNaseDIS
21757	11437252	Sami-Subbu,R., Choi,S.B., Wu,Y., Wang,C. and Okita,T.W.	Identification of a cytoskeleton-associated 120 kDa RNA-binding protein in developing rice seeds.	Plant Mol. Biol.	46(1)	79-88	2001	_,TSN	,Rp120, OsTSN
21758	9061016	Sanmiya,K., Iwasaki,T., Matsuoka,M., Miyao,M. and Yamamoto,N.	Cloning of a cDNA that encodes farnesyl diphosphate synthase and the blue-light-induced expression of the corresponding gene in the leaves of rice plants.	Biochim. Biophys. Acta	1350(3)	240-246	1997	FPPS1	OsFPPS1, FPPS, OsFPS
21759	10353221	Sanmiya,K., Ueno,O., Matsuoka,M. and Yamamoto,N.	Localization of farnesyl diphosphate synthase in chloroplasts.	Plant Cell Physiol.	40(3)	348-354	1999	FPPS2,FPPS1	OsFPPS2, OsFPS2, FPS2,OsFPPS1, FPPS, OsFPS
21760	1715972	Sano,H. and Youssefian,S.	A novel ras-related rgp1 gene encoding a GTP-binding protein has reduced expression in 5-azacytidine-induced dwarf rice.	Mol. Gen. Genet.	228(1-2)	227-232	1991	RGP1	rgp1, OsRab11E2
21761	12795701	Santi,L., Wang,Y., Stile,M.R., Berendzen,K., Wanke,D., Roig,C., Pozzi,C., Muller,K., Muller,J., Rohde,W. and Salamini,F.	The GA octodinucleotide repeat binding factor BBR participates in the transcriptional regulation of the homeobox gene Bkn3.	Plant J.	34(6)	813-826	2003	_,_,_,_	OsGBP1, GBP1,OsGBP3, GBP3,OsGBP2, GBP2,OsBBR, BBR, OsGBP4, GBP4
21763	11961544	Sasaki,A., Ashikari,M., Ueguchi-Tanaka,M., Itoh,H., Nishimura,A., Swapan,D., Ishiyama,K., Saito,T., Kobayashi,M., Khush,G.S., Kitano,H. and Matsuoka,M.	Green revolution: A mutant gibberellin-synthesis gene in rice.	Nature	416(6882)	701-702	2002	SD1	sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2, OsPHQ1, OsPHq1, PHq1
21764	7987417	Sasaki,T., Song,J., Koga-Ban,Y., Matsui,E., Fang,F., Higo,H., Nagasaki,H., Hori,M., Miya,M. and Murayama-Kayano,E.	Toward cataloguing all rice genes: large-scale sequencing of randomly chosen rice cDNAs from a callus cDNA library.	Plant J.	6(4)	615-624	1994	PDC1,ACR5,_,_,GF14F,ENOD93B,RPL19,ANT,UBL40-4,_,SPDS1,_,ADH1,_,GF14B,_,TRXH,_,UBL40-2,_,RPS5,_,P2C,_,GSTU2,_,RRJ2,GSTU9,HMGB1,_,_,_,GLN1;1,GDH1,Hb2,_,ASN,GSTU1,HSP60-3B,ACP,_,IAA10,LC4,GF14C,CCR10,GID2,CALB,_,_,_,_,EFTU,_,_,_,_,_,_,GRP6,RGP2,_,ISC23,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,RPL3A,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,PGI1,RLCK268,_,_,_,_,CALA,_,_,MT2A,GMPS1,_,_,_,RPS24,RPL17,RPL2,RPL5,RPL31,RFA2,CC1,_,_,UBL40-1,_,_,ALDC1,_,CPD2B,_,VALRS1,_,_,_,_,_,_,TUBA3,HMGB707,_,GAPC1,XTH11,6PGDH2,CYP20-2,ALDC2,OLE18,AGC17,NUO,EEF1B,RPS25,_,ORYA,GSTF5,BGL14X,CRO1,DUF568.8,ARPK,GS2,HMGB710,PK5,PK1,PK3,RPS6E,RPS6A,RPL18A,RPL23A,RPL23E,RPS28 ,RPS3AC,UBQ5,AKR2,SODCC2,P1,P2A,PDIL1-1,GRP162,GSTU11,_,PGK4,PGK2,_,Hb1,_,_,_,_,PHO1,RAB7B3,PCNA,APX7,MED37_1,SODCC1,GAPC2,CTHSP70-1,MT2B,UGP1,GLT1,RAN2,RACK1,_,_,LTP1.15,EIF4A1,_,GRP3,TPI,LRT2,_,_,_	pdc1*, pdc1, pdc4, pdc 1, PDC 1, OsPDC1,OsACR5,RPL12, RPL10, OsRPL12, OsRPL10,RAc2,GF14f, SR14-3-3, OsGF14f, S94, ric1, 14-3-3f,OsENOD93b,RPL19.3, OsRPL19.3, OsRPL19, RPL19e, OsRPL19e,ant, ricANC1, ANC1,UbL40-4, OsUbL40-4,,OsSPDS1, OsSPDS, SPDS,,Adh1, Adh1/2, adh1/adh2, OsADH1,,GF14b, OsGF14b, 14-3-3b,,trxh, Trx-H, OsTRXh1, TRXh1, OsTrxh1, Os1, OsTrx23, Trx23, RPP13-1,,UbL40-2, OsUbL40-2,,RPS5A, OsRPS5, OsRPS5A,OsARFA1f, ARFA1f,OsP2C,OsARFA1d, ARFA1d,OsGSTU2, ParC,OsARFA1a, ARFA1a,OsRRJ2,OsGSTU9,OsHMGB1, OsMNB1B, MNB1B,OsEno2, Eno2,OsOMT26, ROMT-15, ROMT15, COA20, OsCCoAOMT, CCoAOMT,OsSAHH, SAHH,OsGLN1;1, GS1, RGS28, OsGS1;1, GS1;1, OsGS, GS1, OsGS1, GLN1-1, OsGS1-1, GS1-1, GS1.1, OsGS1.1,OsGDH1,HB2, OsHB2, OsNSHB2, hb2, GLB1b, ORYsa GLB1b, OsPgb1.2, Pgb1.2,OsLP, PR-5, 14b,OsASN2, OsAS, OsAS2, AS2,OsGSTU1,OsHSP60-3B,,OsAKR5, AKR5,OsIAA10, OsIAA5, DLN71, OsDLN71,OsLC4,GF14c, OsGF14c, 14-3-3c,OsCCR10, CCR10,gid2, GF14e, OsGF14e, OsGID2, 14-3-3e,CALb*, Cal2, CAM1-2, CAM, CaM-1, OsCam1-2, OsCaM1-2,OsCPn60beta2, OsCPn60b2,OsPBE1,,BIP108,tufA, EF-Tu,,,,,Fd, OsFd4, Fd4,OsCycC_1, CycC_1,OsGRP6, GRRBP7,rgp2, OsRab11B1,OsRab1C1,OsISC23,Nhp2,,,H3R-21,htpB,,,,OsDPK2, stk,,,,,,OsPBB1, PUP1,SUP44,,,,PRP-22,,,,,,OsRPL3A, ARP1, ARP3,rpL32_8.1,,,,,,,,,,,,,,OsFbox067, OsFbox67, Os_F0477,  OsFBX38, FBX38,,,,,,,,surf-3,Ubi1,,,,OsDjA4, YDJ1,,,AGL2,,,,,,,,Osj3g2BTF3, BTF3b, Os03g2BTF3,Pgi1(Pgia), Pgia, Pgi_1, Pgi1, GPI-A, PHI-A, Pgi-a, PGI-a,OsRLCK268,,,OsRab1B2, OsRas1,RPS13, RPS13a, OsRPS13, OsRPS13a,CALa*, Cal1, CaM-2, CAM2, CAM, OsCaM2, OsCam2, OsCaM1, CaM1,eIF-5A-2,,OsMT2a, MT2a, met6, Osmet6, OsMT-2, MT-2, rgMT-2, OsMT-I-2a, OsMT2-1, MT-I-2a, MT2-1,OsGMPS1,RPS4, RPS19, OsRPS4, OsRPS19 ,RPS23, OsRPS23,rig, RPS15, OsRPS15,OsRPS24,RPL22, OsRPL17, OsRPL22,rpl2, rpl8, RPL8, OsRPL2, OsRPL8,rpl5, RL5, RPL18p/L5e, RPL18p, RPL5e, OsRPL5, OsRPL5e, OsRPL18p,OsRPL31,rfa2*, REFA2, refa2, OsEF1alpna, EF1alpna,OsCc1, OsCc-1,,,UbL40-1, OsUbL40-1,,Sec23c,AldC-1,OsCSP2, CPS2,OsSCP10, SCP10,Rad6, OsRad6, Dhr6, OsUBC9, UBC9,OsValRS1, ValRS1,Osj3g1BTF3, BTF3a, Os03g1BTF3,OsPABPC1, PABPC1,Ub-CEP52-2,mt rpl13, mt RPL13,S27a,H4, OsH4,OsTubA3, TubA3, OS-TubA1, TubA1,OsHMGB706,,OsGapC1, OsGapC3,OsXTH11, XTR2, OsXTR2, Meri-5,Os6PGDH2,OsCYP20-2, OsCYP-11, OsNuCYP20-2,GSC 233, AldC-2, OsAldC-2, OsFBA, FBA,ole18, OsOLE18,OsAGC17,OsNUO,eEF-1beta, EF-1beta,RPS25, RPS25a, OsRPS25, OsRPS25a ,RPS17, OsRPS17,ocp*, ocp, OsOCP, OsORYA,OsGSTF5, OsGST F5,OsBGL14X,OsCRO1, CRT, CRT-1, OsCRT-1, OsCRT1, CRT1,OsDUF568.8,ArPK, OsArPK,OsGS2, GLN2, OsGLN2, RGS31, OsRGS31,OsHMGB710, OsNFD101, NFD101,OsPK5, OsPK10, PK10,OsPK1,OsPK3, OsPK5, PK5,OsRPS6e,RPS6, RPS6a, OsRPS6A, OsRPS6, OsRPS6a,OsRPL18A,OsRPL23, OsRPL23A, RPL23,OsRPL23e, OsRPL23B, RPL23B,OsRPS28, OsRPS28e, RPS28e,RPS3a, Os RPS3a, RPS3aC, OsRPS3aC,RPS27a, OsUBQ5, OsRPS27a,OsAKR2, AKR4C14, OsAKR4-2, AKR4-2,Cu/Zn-SOD, Cu/Zn- SOD, OsCu-ZnSOD2, Cu-ZnSOD2, OsSODB, OsSOD3, SodCc2, Os SodCc2, sodB, OsSodB, RSODB, OssodCc1, OsCSD1.1, CSD1.1, OsCDS1, OsSOD3-CU/Zn, SOD3-CU/Zn, CuZnSOD2, Cu/ZnSOD2, OsCu/ZnSOD2, OsCSD1, CSD1, CuZnSOD1, OsCuZnSOD2, OsCSD4, CSD4, OsCSD3, CSD3, Cu/Zn-SOD3,OsP1,OsP2A,OsPDIL1;1, PDIL1;1, PDIL 1-1, PDI, OsPDIL1-1, OsTrx28, Trx28,OsGRP162,OsGSTU11,,PGK, OsPGK4,OsPGK2, OsPGK2a, OsPGK2b, OsPGK2c, PKP ,OsEE1, OsENO1, ENO1, OsEno7, Eno7, OsEno4, Eno4,HB1, OsHB1, GLB1A, rHb1, ORYsa GLB1a, nsHb1, OsNSHB1, hb1, nsHb, OsPgb1.1, Pgb1.1,OsMed36_2, Med36_2 ,OsPOP1, POP1,RMtATPb, atpB, AtpB ,HSP70, hsp70, OsHSP70 , OsMed37_8, Med37_8 ,Pho1, OsPho1, OsPHOL, PHOL, OsPHOI, PHOI,OsRab7B3, Rab7B3, OsRab7, Rab7,OsPCNA,OsAPx7, OsAPx07, OSAPX7, APx7, sAPX,OsMed37_1, Med37_1, OsHSP70, OsHSP70.1, HSP70.1,sodCc1, SODCC.1, sodA, RSODA, OsSOD1, OsCSD2, OsSodA, SodCc2, OsSODA1, SODCc1-Cu/Zn, OsCu/Zn-SOD2, Cu/Zn-SOD2, OsCSD1.2, CSD1.2, OsSODCc1-Cu/Zn, SODCc1-Cu/Zn, CuZnSOD1, Cu/ZnSOD1, OsCu/ZnSOD1, OsCSD4, CDS4, CuZnSOD4, OsCuZnSOD1, OsCSD1, CSD1, OsSOD2,GAPDH, OsGAPDH, OsGapC2,OsctHSP70-1, ctHSP70-1, OsMed37_6, Med37_6, OsHSP70.6, HSP70.6,OsMT2b, MT2b, OsMT-I-2c, MT-I-2c, MT2C, MT2BL, OsMT2C, OsMT2BL, MTE, OsMT2b1, OsMT2b2, MT2b1, MT2b2, MTb, met1, OsMTe, OsMT-I-2c, OsB22EL8, MTe, MT-I-2c, B22EL8,Ugp1, OsUgp1, UGP2, UGP3,OsGLT1, OsNADH-GOGAT1, NADH-GOGAT1, OsNADH-GOGAT, GOGAT, NADH-GOGAT, OsGOGAT1, GOGAT1, OsGLU1,OsRAN2,RACK1A, RWD, OsWD40-21, OsRACK1, OsRACK1A,OsLTP1.8, OsLtpI.8,OsLTP1.12, OsLtpI.12,OsLTP1.15, OsLtp1.15, OsLTPL23, LTPL23,eIF-4a, EIF4A, OseIF4A, eIF4A1, elF-4A, eIF4A-1, OsRH4,OsRH2, RH2, eIF4A-3,OsGRP3, RTP, RBP-152 ,tpi*, tips, TI, OsTPI1, TPI1, OsTPI1.1, OsTPI1.2 ,CYC2, cyc2*, cyc2, OsCYP2, Cyp2, OsCYP19-2, CYP19-2, OsCYP-2, OsCyp2-P, OsCyp2, OsCYP19-1, LRT2/OsCYP2, lrt2*, lrt2, Ppcti ,OsLTP1.18, OsLTP1, nsLTP1, a15, OsLtpI.18, LTPC2, OsLTPC2,Dhr6, OsUBC5b, OsUBC16, UBC16,OsHsp90, HSP90
21767	12447438	Sasaki,T., Matsumoto,T., Yamamoto,K., Sakata,K., Baba,T., Katayose,Y., Wu,J., Niimura,Y., Cheng,Z., Nagamura,Y., Antonio,B.A., Kanamori,H., Hosokawa,S., Masukawa,M., Arikawa,K., Chiden,Y., Hayashi,M., Okamoto,M., Ando,T., Aoki,H., Arita,K., Hamada,M., Harada,C., Hijishita,S., Honda,M., Ichikawa,Y., Idonuma,A., Iijima,M., Ikeda,M., Ikeno,M., Ito,S., Ito,T., Ito,Y., Ito,Y., Iwabuchi,A., Kamiya,K., Karasawa,W., Katagiri,S., Kikuta,A., Kobayashi,N., Kono,I., Machita,K., Maehara,T., Mizuno,H., Mizubayashi,T., Mukai,Y., Nagasaki,H., Nakashima,M., Nakama,Y., Nakamichi,Y., Nakamura,M., Namiki,N., Negishi,M., Ohta,I., Ono,N., Saji,S., Sakai,K., Shibata,M., Shimokawa,T., Shomura,A., Song,J., Takazaki,Y., Terasawa,K., Tsuji,K., Waki,K., Yamagata,H., Yamane,H., Yoshiki,S., Yoshihara,R., Yukawa,K., Zhong,H., Iwama,H., Endo,T., Ito,H., Hahn,J.H., Kim,H.I., Eun,M.Y., Yano,M., Jiang,J. and Gojobori,T.	The genome sequence and structure of rice chromosome 1.	Nature	420(6913)	312-316	2002		
21768	10854779	Sassa,H., Oguchi,S., Inoue,T. and Hirano,H.	Primary structural features of the 20S proteasome subunits of rice (Oryza sativa).	Gene	250(1-2)	61-66	2000	_,_,_,_,_,_,_,_,_,TT1,_,_,_,_	OsPAC1,OsPAD1,OsPBG1,OsPBA1,OsPBC1,OsPBD1,OsPAF1,OsPAA1, PAA1,OsPAE1, PAE1,OsPAB1, PAB1, OsTT1,OsPBE1,OsPBB1, PUP1,OsPAG1, OsPSA7,OsPBF1
21769		Sato,H., Suzuki,Y., Sakai,M. and Imbe,T.	Molecular Characterization of Wx-mq, a Novel Mutant Gene for Low-amylose Content in Endosperm of Rice (Oryza sativa L.)	Breeding Science	52(2)	131-135	2002	WX1	wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx
21770	9869405	Sato,Y., Sentoku,N., Nagato,Y. and Matsuoka,M.	Isolation and characterization of a rice homebox gene, OSH15.	Plant Mol. Biol.	38(6)	983-998	1998	OSH15	OSH15, OsH15, OSKN3, Oskn3, HOS3, D6, d6, OSH15/Oskn3, HB253, H15, OsKNOX3, KNOX3
21771	7742859	Sauter,M., Mekhedov,S.L. and Kende,H.	Gibberellin promotes histone H1 kinase activity and the expression of cdc2 and cyclin genes during the induction of rapid growth in deepwater rice internodes.	Plant J.	7(4)	623-632	1995	CDC2-1,CYCB2;2,CYCB2;1,CDC2-2	cdc2Os-1, CDC2Os-1, CDKA-1, CDKA;1, Orysa;CDKA;1, OsCDKA;1, cdc2Os1, Rcdc2-1, OsCDKA1, CDKA1, CDC20S-1, OsCDC20S-1 ,cycB2;2 (=cycOs2), cycB2;2, cycOs2, CycB2;2, CycOs2, CYCB2-2, CYCOS2, CycB2-Os2, CYCB2, CycB2;os;2, OsCycB2;2, Orysa;CycB2;2, OsCYCOS2, Os;cycB2;2, CYCB2.2, OsCYCB2.2,cycB2;1 (=cycOs1), cycB2;1, cycOs1, CycB2;1, CycOs1, CYCB2-1, CYCOS1, CycB2-Os1, CYCB2, CycB2;os;1, Orysa;CycB2;1, CycB2;os;1, OsCycB2;1,cdc2Os-2, CDC2Os-2, CDKA-2, CDKA;2, Orysa;CDKA;2, Rcdc2-2, OsCDKA;2, OsCDKA2, CDKA2, CDKA;1, OsCDKA;1, CDC20S-2, OsCDC20S-2
21772	12432025	Sauter,M., Rzewuski,G., Marwedel,T. and Lorbiecke,R.	The novel ethylene-regulated gene OsUsp1 from rice encodes a member of a plant protein family related to prokaryotic universal stress proteins.	J. Exp. Bot.	53(379)	2325-2331	2002	USP1,ADH1,PDC2	OsUsp1, OsUSP31, USP31,Adh1, Adh1/2, adh1/adh2, OsADH1,pdc2*, pdc2
21773	15557090	Sauter,M., Cornell,K.A., Beszteri,S. and Rzewuski,G.	Functional Analysis of Methylthioribose Kinase Genes in Plants.	Plant Physiol.	136(4)	4061-4071	2004	_,MTK1	OsMTK2,OsMTK, OsMTK1, MTK
21774	16297065	Sauter,M., Lorbiecke,R., Ouyang,B., Pochapsky,T.C. and Rzewuski,G.	The immediate-early ethylene response gene OsARD1 encodes an acireductone dioxygenase involved in recycling of the ethylene precursor S-adenosylmethionine.	Plant J.	44(5)	718-729	2005	SIP2,SIP2A	Sip2, OsARD1, ARD1, OsIDI1, IDI1, OsIDI1L/OsARD1,Sip2A, ARD 2, ARD2, OsARD2, OsARD, IDI1, OsIDI1
21775	10323860	Sawa,S., Watanabe,K., Goto,K., Liu,Y.G., Shibata,D., Kanaya,E., Morita,E.H. and Okada,K.	FILAMENTOUS FLOWER, a meristem and organ identity gene of Arabidopsis, encodes a protein with a zinc finger and HMG-related domains.	Genes Dev.	13(9)	1079-1088	1999	SH1,YAB1	YAB2, OsYAB2, OsSh1, Sh1, OsFIL2, OsSH1, Osh1,OsYAB1, FIL1, osFIL1
21776		Sawada,K. and Iwata,M.	Isolation of blast fungal cerebroside elicitor-responsive genes in rice plants	J. Gen. Plant Pathol.	68	128-133	2002	SBP,_,BRD1	Os SBP, OsSBP,Os GPT,OsBrd1, Brd1
21777		Sawada,K., Tokuda,L. and Shinmyo,A.	Characterization of the Rice Blast Fungal Elicitor-Responsive Gene OsSBP Encoding a Homolog to the Mammalian Selenium-binding Proteins	Plant Biotechnol.	20(2)	177-181	2003	SBP	Os SBP, OsSBP
21778	15118317	Sawada,K., Hasegawa,M., Tokuda,L., Kameyama,J., Kodama,O., Kohchi,T., Yoshida,K. and Shinmyo,A.	Enhanced resistance to blast fungus and bacterial blight in transgenic rice constitutively expressing OsSBP, a rice homologue of mammalian selenium-binding proteins.	Biosci. Biotechnol. Biochem.	68(4)	873-880	2004	SBP	Os SBP, OsSBP
21779	10998053	Schaffrath,U., Zabbai,F. and Dudler,R.	Characterization of RCI-1, a chloroplastic rice lipoxygenase whose synthesis is induced by chemical plant resistance activators.	Eur. J. Biochem.	267(19)	5935-5942	2000	LOX-L2,LOX-RCI1,_,LOX11	OsLOX-L2, LOX1.1, LOX L-2, LOX-2, OsLOX2, LOX2,OsLOX-RCI1,Lox2:Os:1, OsLOX9, LOX9, OsLOX8, LOX8, OsLOX2, LOX2, OsRLL, OsHI-LOX, HI-LOX, RLL2 LOX, RLL2, Lox2osPil, OsLOX2;1, LOX2;1, OsLOX1, OsLOX7, LOX7,OsLOX11, OsRCI-1, RCI-1, OsBphi262, OsLOX12, OsLOX2.2, LOX2.2, LOX2.1, OsLOX2.1, OsLOX14, LOX14
21781	9225866	Schultz,T.F. and Quatrano,R.S.	Characterization and expression of a rice RAD23 gene.	Plant Mol. Biol.	34(3)	557-562	1997	RAD23	OsRAD23
21783	10488233	Sentoku,N., Sato,Y., Kurata,N., Ito,Y., Kitano,H. and Matsuoka,M.	Regional expression of the rice KN1-type homeobox gene family during embryo, shoot, and flower development.	Plant Cell	11(9)	1651-1663	1999	OSH1,OSH6,OSH15,OSH43,OSH3,OSH10,OSKN2	OSKN1, Oskn1, OsKN1, OSH1/Oskn1, HB75,OsH6, HOS16,OSH15, OsH15, OSKN3, Oskn3, HOS3, D6, d6, OSH15/Oskn3, HB253, H15, OsKNOX3, KNOX3,OsH43, H43,OsH3, H3, HOS13,OsH10, H10, HB412,OsKn2, OsH71, HOS9, OSH71, OSH71/Oskn2
21784	15682279	Sentoku,N., Kato,H., Kitano,H. and Imai,R.	OsMADS22, an STMADS11-like MADS-box gene of rice, is expressed in non-vegetative tissues and its ectopic expression induces spikelet meristem indeterminacy.	Molecular Genetics & Genomics (Molecular General Genetics up to 2001)	273(1)	1-9	2005	MADS22	OsMADS22, RMD1, DLN68, OsDLN68
21785	7766894	Seo,H.S., Kim,H.Y., Jeong,J.Y., Lee,S.Y., Cho,M.J. and Bahk,J.D.	Molecular cloning and characterization of RGA1 encoding a G protein alpha subunit from rice (Oryza sativa L. IR-36).	Plant Mol. Biol.	27(6)	1119-1131	1995	D1	d1, GPA1, GA1, OsGA1, RGA1, dwf1, XA7, RGA, D1/RGA1, D89, TGW5, OsTGW5, SRG5, OsSRG5
21786	15292215	Serrato,A.J., Perez-Ruiz,J.M., Spinola,M.C. and Cejudo,F.J.	A novel NADPH thioredoxin reductase, localized in the chloroplast, which deficiency causes hypersensitivity to abiotic stress in Arabidopsis thaliana.	J. Biol. Chem.	279(42)	43821-43827	2004	NTRC	OsNTRC, NtrC, OsGRL15
21787	9099854	Sha,S., Yabushita,T., Minakuchi,K., Masumura,T. and Tanaka,K.	Structure of the rice glutaredoxin (thioltransferase) gene.	Gene	188(1)	23-28	1997	GRX	grx, OsGRX, OsGRX14, OsGrx9, OsGrxC2;2, GrxC2;2, OsGrxC2.2, GrxC2.2
21788	15215503	Sharma,A., Isogai,M., Yamamoto,T., Sakaguchi,K., Hashimoto,J. and Komatsu,S.	A Novel Interaction between Calreticulin and Ubiquitin-Like Nuclear Protein in Rice.	Plant Cell Physiol.	45(6)	684-692	2004	CRO1,CRTINTP	OsCRO1, CRT, CRT-1, OsCRT-1, OsCRT1, CRT1,OsCRTintP, ANIP1, OsANIP1
21789	7568110	Shcherban,T.Y., Shi,J., Durachko,D.M., Guiltinan,M.J., McQueen-Mason,S.J., Shieh,M. and Cosgrove,D.J.	Molecular cloning and sequence analysis of expansins--a highly conserved, multigene family of proteins that mediate cell wall extension in plants.	Proc. Natl. Acad. Sci. U.S.A.	92(20)	9245-9249	1995	EXPA1,EXPA2,EXPA3	OsEXP1, EXPA1, OsEXPA1, OsaEXPa1.16, RiExA,OsEXP2, OsEXP2(Os-EXP2), Os-EXP2, EXPA2, OsEXPA2, OsaEXPa1.23, RiExB, RiExC, Os-EXPA2,OsEXP3 (Os-EXP3), EXPA3, OsEXP3, Os-EXP3, OsaEXPa1.18, RiExD, Os-EXPA3, OsEXPA3
21790	14640074	Shen,G.-a., Pang,Y.-z., Lin,C.-f., Wei,C., Qian,X.-y., Jiang,L.-z., Du,X.-l., Li,K.-g., ATTia,K. and Yang,J.-s.	Cloning and characterization of a novel Hsp100/Clp gene (osClpD) from Oryza sativa	DNA Seq.	14(4)	285-293	2003	ERD1	CLPD1, ClpD1, OsERD1, OSClpD, osClpD, OsClpD1, OsClpD1.1, OsClpD1.2, OsClpD1.3, OsClpD1.4 
21791	2016064	Shimada,H. and Tada,Y.	Rapid isolation of a rice waxy sequence: a simple PCR method for the analysis of recombinant plasmids from intact Escherichia coli cells.	Gene	98(2)	243-248	1991		
21792	15356321	Shimada,H., Koizumi,M., Kuroki,K., Mochizuki,M., Fujimoto,H., Ohta,H., Masuda,T. and Takamiya,K.	ARC3, a Chloroplast Division Factor, is a Chimera of Prokaryotic FtsZ and Part of Eukaryotic Phosphatidylinositol-4-phosphate 5-kinase.	Plant Cell Physiol.	45(8)	960-967	2004	ARC3	OsARC3
21795	16051676	Shimizu,H., Sato,K., Berberich,T., Miyazaki,A., Ozaki,R., Imai,R. and Kusano,T.	LIP19, a Basic Region Leucine Zipper Protein, is a Fos-like Molecular Switch in the Cold Signaling of Rice Plants.	Plant Cell Physiol.	46(10)	1623-1634	2005	OBF1,LIP19	OsOBF1, OsbZIP87,Lip19, lip19, OsLIP9, OsbZIP38, bZIP38
21796	7716235	Shintani,A., Yamauchi,D. and Minamikawa,T.	Nucleotide sequence of cDNA for a putative cysteine protease from rice seeds.	Plant Physiol.	107(3)	1025	1995	_	OsCP1, CP1
21797	10571178	Shirasu,K., Lahaye,T., Tan,M.W., Zhou,F., Azevedo,C. and Schulze-Lefert,P.	A novel class of eukaryotic zinc-binding proteins is required for disease resistance signaling in barley and development in C. elegans.	Cell	99(4)	355-366	1999		
21798	9678973	Shoji,K., Iwasaki,T., Matsuki,R., Miyao,M. and Yamamoto,N.	Cloning of a cDNA encoding an importin-alpha and down-regulation of the gene by light in rice leaves.	Gene	212(2)	279-286	1998	IMPA1A,IMPA1B	rImpa1a, Impa1a, Osimpa1, Osimpalpha1, OsImpalpha1a, Impalpha1a,OsIMPA1B, IMPalpha1B, OsIMPalpha1B, Imp3, OsImpalpha1b, Impalpha1b
21799	1731968	Shorrosh,B.S., Wen,L., Zen,K.C., Huang,J.K., Pan,J.S., Hermodson,M.A., Tanaka,K., Muthukrishnan,S. and Reeck,G.R.	A novel cereal storage protein: molecular genetics of the 19 kDa globulin of rice.	Plant Mol. Biol.	18(1)	151-154	1992	GLB1	glb1(t)*, glb1(t), glb1, alpha-Glb, Glb-1, OsGlb1, Glb1, Glb, OsEnS-77
21800	2251127	Shyur,L.F. and Chen,C.S.	Nucleotide sequence of two rice prolamin cDNAs.	Nucleic Acids Res.	18(22)	6683	1990	_,PRO13B.3	,Prol-22, pro13b.3, OsPRO13B.3, PROLM22
21801	1391776	Shyur,L.F., Wen,T.N. and Chen,C.S.	cDNA cloning and gene expression of the major prolamins of rice.	Plant Mol. Biol.	20(2)	323-326	1992	PRO13A.2	Prol-19, OsEnS-94, RM1, OsRM1, pro13a.2, OsPRO13A.2, PROLM26
21804	1731976	Simmons,C.R., Litts,J.C., Huang,N. and Rodriguez,R.L.	Structure of a rice beta-glucanase gene regulated by ethylene, cytokinin, wounding, salicylic acid and fungal elicitors.	Plant Mol. Biol.	18(1)	33-45	1992	GNS1	OsPR2, PR2, Gns1, OsGNS1, OsEGL1
21805	12856948	Simmons,C.R., Fridlender,M., Navarro,P.A. and Yalpani,N.	A maize defense-inducible gene is a major facilitator superfamily member related to bacterial multidrug resistance efflux antiporters.	Plant Mol. Biol.	52(2)	433-446	2003	ZIFL2,ZIFL10	OsZIFL2, Os-mfs1, mfs1,OsZIFL10, Os-mfs2, mfs2
21806	14638937	Singla-Pareek,S.L., Reddy,M.K. and Sopory,S.K.	Genetic engineering of the glyoxalase pathway in tobacco leads to enhanced salinity tolerance	Proc. Natl. Acad. Sci. U.S.A.	100(25)	14672-14677	2003	GLYII-3	OsGLYII3, GLYII3, gly II, OsGLYII-3
21807	16429261	Sivamani,E. and Qu,R.	Expression enhancement of a rice polyubiquitin gene promoter.	Plant Mol. Biol.	60(2)	225-239	2006	RUBI3	rubi3, UBQ3
21808	11752383	Skinner,D.J., Baker,S.C., Meister,R.J., Broadhvest,J., Schneitz,K. and Gasser,C.S.	The Arabidopsis HUELLENLOS gene, which is essential for normal ovule development, encodes a mitochondrial ribosomal protein.	Plant Cell	13(12)	2719-2730	2001	_	HLL
21809	16244905	Skinner,J.S., J., Szucs,P., Marquez-Cedillo,L., Filichkin,T., Amundsen,K., Stockinger,E.J., Thomashow,M.F., Chen,T.H. and Hayes,P.M.	Structural, Functional, and Phylogenetic Characterization of a Large CBF Gene Family in Barley.	Plant Mol. Biol.	59(4)	533-551	2005	DREB1F,DREB1E,DREB1D,DREB1B	OsERF#027, OsERF027, OsERF27, ERF27, AP2/EREBP#081, AP2/EREBP81, OsDREB1F,OsDREB1E, OsERF030, OsERF#030, OsERF30, ERF30, AP2/EREBP#160, AP2/EREBP160, OsDREB1-1,OsDREB1D, CBF4, ERF116, OsERF#116, OsERF116, AP2/EREBP#054, AP2/EREBP54, OsCbf1, OsCBF1,OsDREB1B, ERF31, OsERF031, OsERF#031, OsERF31, AP2/EREBP#169, AP2/EREBP169, OsDREB1b, OsDREB1C, OsCBF1, CBF1
21810	8049375	Smith,M.A., Stobart,A.K., Shewry,P.R. and Napier,J.A.	Tobacco cytochrome b5: cDNA isolation, expression analysis and in vitro protein targeting.	Plant Mol. Biol.	25(3)	527-537	1994	CYB5-4	OsCYB5-4
21811	9159957	Solinas,G., Pandolfo,D., Valle,G. and Coraggio,I.	The electronic Plant Gene Register.	Plant Physiol.	114(1)	395-396	1997	PLDALPHA3,PLDalpha1	OsPLDalpha3, RPLD2, PLDalpha3, OsPLDeta1, PLD2, OsC2DP52, C2DP52,RPLD1, PLD1, OsPLDalpha1, OsC2DP2, C2DP2
21812	9235602	Solinas,G., Valle,G., Pandolfi,D. and Coraggio,I.	The electronic Plant Gene Register.	Plant Physiol.	114(2)	747-749	1997	_	OsMYB4, Osmyb4, OsMyb4, MYB4, OsMYB55, MYB55, OsMyb8, MYB8, OsMYB13b, MYB13b, OsMYB15, MYB15, Os2R_MYB46, 2R_MYB46
21813		Song,F. and Goodman,R.M.	Molecular cloning and characterization of a rice phosphoinositide-specific phospholipase C gene, OsPI-PLC1, that is activated in systemic acquired resistance	Physiol. Mol. Plant Pathol.	61(1)	31-40	2002	PIPLC1	OsPI-PLC1, PI-PLC1, OsPLC1, PLC1, OsC2DP69, C2DP69
21814	9039500	Song,J., Yamamoto,K., Shomura,A., Yano,M., Minobe,Y. and Sasaki,T.	Characterization and mapping of cDNA encoding aspartate aminotransferase in rice, Oryza sativa L.	DNA Res.	3(5)	303-310	1996	GOT1,GOT2	Got1, Aat1, OsAAT, GOT-A,Got2, Aat2
21815	9679197	Song,J., Yamamoto,K., Shomura,A., Itadani,H., Zhong,H.S., Yano,M. and Sasaki,T.	Isolation and mapping of a family of putative zinc-finger protein cDNAs from rice.	DNA Res.	5(2)	95-101	1998	CO3,BBX9,BBX7,_,_,STO,RNG1	OsB, OsCO3, OsBBX27, OsCO3/OsB, OsCCT31, CO3, BBX27, CCT31,OsP, OsBBX9, OsCCT12, CCT12,OsN, OsBBX7, OsCCT08, OsCCT8, OsDTH2, CCT08, CCT8, DTH2,OsBBX22, BBX22,OsBBX16, OsDBB3a, BBX16, DBB3a,OsBBX11, OsSTO, BBX11, BBX24, OsBBX24,OsBBX4, BBX4, OsSTH, STH, OsRNG1
21816	14729919	Song,J.T., Lu,H. and Greenberg,J.T.	Divergent Roles in Arabidopsis thaliana Development and Defense of Two Homologous Genes, ABERRANT GROWTH AND DEATH2 and AGD2-LIKE DEFENSE RESPONSE PROTEIN1, Encoding Novel Aminotransferases.	Plant Cell	16(2)	353-366	2004	AGD2,_	OsAGD2, OsLC3, LC3,OsALD1, ALD1
21817	11826307	Song,W., Solimeo,H., Rupert,R.A., Yadav,N.S. and Zhu,Q.	Functional dissection of a Rice Dr1/DrAp1 transcriptional repression complex.	Plant Cell	14(1)	181-195	2002	DR1,DRAP1	OsDr1,OsDrAp1, DrAp1
21818	8525370	Song,W.-Y., Wang,G.-L., Chen,L.-L., Kim,H.-S., Pi,L.-Y., Holsten,T., Wang,G.B., Zhai,W.-X., Zhu,L.-H., Fauquet,C. and Ronald,P.	A receptor kinase-like protein encoded by the rice disease resistance gene, Xa21.	Science	270(5243)	1804-1806	1995	XA21	Xa21*, Xa21, OsXA21
21820	9286106	Song,W.Y., Pi,L.Y., Wang,G.L., Gardner,J., Holsten,T. and Ronald,P.C.	Evolution of the rice Xa21 disease resistance gene family.	Plant Cell	9(8)	1279-1287	1997	XA21	Xa21*, Xa21, OsXA21
21821	15069639	Soranzo,N., M., Mizzi,L., G. and Frova,C.	Organisation and structural evolution of the rice glutathione S-transferase gene family.	Molecular Genetics & Genomics (Molecular General Genetics up to 2001)	271(5)	511-521	2004	GSTU19,GSTU11,GSTU37,GSTZ2,GSTU36,GSTU24,GSTF1,GSTU10,GSTU20,EF1G2,GSTT1,GSTF16,GSTU28,GSTU4,GSTU31,GSTT2,GSTU14,GSTF12,GSTU9,DHAR2,GSTF14,GSTF15,GSTU27,GSTU8,GSTU21,GSTU33,GSTF4,GSTF2,GSTF8,GSTF7,GSTF9,GSTF13,GSTZ3,GSTU6,GSTU7,GSTU16,GSTU40,GSTU18,GSTU2,GSTU12,GSTU38,GSTU32,GSTU26,GSTU25,GSTU3,GSTZ1,GSTU22,GSTU30,GSTF3,GSTU35,GSTU23,GSTF11,GSTU39,GSTF10,GSTU13,GSTU34,GSTU17,EEF1BG,RPP31,GSTF5,GSTU15,GSTU5,DHAR1,GSTU1	OsGSTU19, GSTU6, OsGSTU6, OsGSTU6.1, GSTU6.1,OsGSTU11,OsGSTU37,OsGSTZ2, GSTZ-2,OsGSTU36,OsGSTU24,OsGSTF1, RGSI,OsGSTU10,OsGSTU20,OsEF1G2,OsGSTT1,OsGSTF16,OsGSTU28,OsGSTU4, GST4,OsGSTU31,,OsGSTU14,OsGSTF12, OsEnS-7,OsGSTU9,OsDHAR2,OsGSTF14, GST14,OsGSTF15,OsGSTU27,OsGSTU8, OsGST35, GST35,OsGSTU21,OsGSTU33,OsGSTF4,OsGSTF2, RGSTII,OsGSTF8,OsGSTF7,OsGSTF9,OsGSTF13,OsGSTZ3,OsGSTU6,OsGSTU7,OsGSTU16,OsGSTU40,OsGSTU18, OsGSTU7, GSTU7,OsGSTU2, ParC,OsGSTU12, OsGSTU6.2, GSTU6.2,OsGSTU38,OsGSTU32,OsGSTU26,OsGSTU25,OsGSTU3, OsGSTU29, GSTU29,OsGSTZ1, GSTZ-1,OsGSTU22,OsGSTU30,OsGSTF3, gstf3,OsGSTU35,OsGSTU23,OsGSTF11, OsGST4,OsGSTU39,OsGSTF10,OsGSTU13,OsGSTU34,OsGSTU17, OsGST23, GST23 ,eEF1Bgamma, EF-1gamma, OsEF1G1, EF1G1,OsRPP31, OsGSTF6, GSTF6,OsGSTF5, OsGST F5,OsGSTU15,OsGSTU5,OsDHAR1, DHAR, cytDHAR, OscytDHAR, OsDHAR,OsGSTU1
21822	12077303	Spielmeyer,W., Ellis,M.H. and Chandler,P.M.	Semidwarf (sd-1), &quot;green revolution&quot; rice, contains a defective gibberellin 20-oxidase gene.	Proc. Natl. Acad. Sci. U.S.A.	99(13)	9043-9048	2002	SD1	sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2, OsPHQ1, OsPHq1, PHq1
21823	10608658	Stahl,U., Lee,M., Sjoedahl,S., Acher,D., Cellini,F., Ek,B., Iannacone,R., MacKenzie,D.A., Semeraro,L., Tramontano,E. and Stymne,S.	Plant low-molecular-weight phospholipase A2S (PLA2s) are structurally related to the animal secretory PLA2s and are present as a family of isoforms in rice (Oryza sativa).	Plant Mol. Biol.	41(4)	481-490	1999	_,_	PLA2-II,PLA2-I
21824	12610225	Suenaga,A., Moriya,K., Sonoda,Y., Ikeda,A., N., Hayakawa,T., Yamaguchi,J. and Yamaya,T.	Constitutive Expression of a Novel-Type Ammonium Transporter OsAMT2 in Rice Plants.	Plant Cell Physiol.	44(2)	206-211	2003	AMT2;3,AMT3;2,AMT3;1,AMT4;1,AMT2;2,AMT3;3,AMT2;1	OsAMT2;3, AMT2;3, OsAMT2.3,AMT3;2, OsAMT3;2, OsAMT3.2,OsAMT3;1, AMT3-1, OsAMT3.1, OsAMT2;2,OsAMT4, OsAMT4;1, AMT4-1,OsAMT2;2, AMT2;2, OsAMT2.2,OsAMT3;3, AMT3;3, OsAMT3.3,OsAMT2;1, AMT2-1, OsAMT2.1, AMT2.1
21825	12092832	Sugimori,M., Kiribuchi,K., Akimoto,C., Yamaguchi,T., Minami,E., Shibuya,N., Sobajima,H., Cho,E.M., Kobashi,N., Nojiri,H., Omori,T., Nishiyama,M. and Yamane,H.	Cloning and characterization of cDNAs for the jasmonic acid-responsive Genes RRJ1 and RRJ2 in suspension-cultured rice cells.	Biosci. Biotechnol. Biochem.	66(5)	1140-1142	2002	RRJ2,RRJ1,PDC3,PDC2	OsRRJ2,OsRRJ1,pdc3*, pdc3, OsPDC3, OsSTA202,pdc2*, pdc2
21826	15653795	Sugiyama,K., Hayakawa,T., Kudo,T., Ito,T. and Yamaya,T.	Interaction of N-Acetylglutamate Kinase with a PII-Like Protein in Rice.	Plant Cell Physiol.	45(12)	1768-1778	2004	_,_,_	OsNAGK1, NAGK1,OsNAGK2, NAGK2,OsGlnB
21827	12953112	Sun,C., Palmqvist,S., Olsson,H., Boren,M., Ahlandsberg,S. and Jansson,C.	A Novel WRKY Transcription Factor, SUSIBA2, Participates in Sugar Signaling in Barley by Binding to the Sugar-Responsive Elements of the iso1 Promoter.	Plant Cell	15(9)	2076-2092	2003	WRKY87	OsWRKY87, OsSUSIBA2-like
21828	14756760	Sun,X., Cao,Y., Yang,Z., Xu,C., Li,X., Wang,S. and Zhang,Q.	Xa26, a gene conferring resistance to Xanthomonas oryzae pv. oryzae in rice, encodes an LRR receptor kinase-like protein.	Plant J.	37(4)	517-527	2004	XA3,MRKd,MRKa,MRKc	Xa-3, Xa3 (Xa4b, Xa6, Xa9, Xa w), Xa3, Xaw, Xa6, Xa9, Xa4-b, XA26, Xa26(t), Xa26(t)*, Xa26, RKb, MRKb, MRKB, TRKb, Xa3/Xa26,MRKd, RKd, TRKd,MRKa, RKa, TRKa,MRKc, RKc, TRKc
21829	1714318	Sutliff,T.D., Huang,N., Litts,J.C. and Rodriguez,R.L.	Characterization of an alpha-amylase multigene cluster in rice.	Plant Mol. Biol.	16(4)	579-591	1991	AMY3C,AMY3B,AMY3A	Amy3A/B/C*(RAmy3A/B/C), AmyII-6, AMY1.7, Amy3C, RAmy3A/B/C, Amy3A/B/C*, Amy7, AMY3B, RAmy3C, OsAmy3B,Amy3A/B/C*(RAmy3A/B/C), alpha Amy6, AmyII-5, AMY1.6, Amy1.6, Amy3B, BRAmy3A/B/C, Amy3A/B/C*, Amy6, RAmy3B, alphaAmy6-C, OsRamy3B, OsAmy3C,Amy3A/B/C*(RAmy3A/B/C), Amy3A, RAmy3A/B/C, Amy3A/B/C*, AMY1.2, Amy5, RAmy3A, OsEnS-129
21830	2566167	Suzuka,I., Daidoji,H., Matsuoka,M., Kadowaki,K., Takasaki,Y., Nakane,P.K. and Moriuchi,T.	Gene for proliferating-cell nuclear antigen (DNA polymerase delta auxiliary protein) is present in both mammalian and higher plant genomes.	Proc. Natl. Acad. Sci. U.S.A.	86(9)	3189-3193	1989	PCNA	OsPCNA
21831	1671766	Suzuka,I., Hata,S., Matsuoka,M., Kosugi,S. and Hashimoto,J.	Highly conserved structure of proliferating cell nuclear antigen (DNA polymerase delta auxiliary protein) gene in plants.	Eur. J. Biochem.	195(2)	571-575	1991	PCNA	OsPCNA
21833	9370307	Suzuki,A., Suzuki,T., Tanabe,F., Toki,S., Washida,H., Wu,C.Y. and Takaiwa,F.	Cloning and expression of five myb-related genes from rice seed.	Gene	198(1-2)	393-398	1997	MYB1,_,CSA2,MYB2,GL1D	OsMyb1, OSMYB1, R2R3-MYB, OsDLN141, DLN141, Os2R_MYB55, 2R_MYB55 ,OsMyb4, OSMYB4, MYB4, OsEnS-11, OsGL1C, GL1C, OsMYB13, MYB13, Os2R_MYB11, 2R_MYB11 ,OsCSA2, MYB5, OsMyb5, OSMYB5, Os2R_MYB58, 2R_MYB58,OsMyb2, OSMYB2,OsMyb3, OSMYB3, MYB3, OsGL1D, OsMYB46, MYB46, Kala3, OsKala3, SMG3, OsSMG3, Os2R_MYB39, 2R_MYB39
21834	12815035	Suzuki,K., Suzuki,Y. and Kitamura,S.	Cloning and expression of a UDP-glucuronic acid decarboxylase gene in rice.	J. Exp. Bot.	54(389)	1997-1999	2003	_,_	UXS, UXS-3, OsUXS3,UXS-4, OsUXS4
21835	15488465	Suzuki,K., Watanabe,K., Masumura,T. and Kitamura,S.	Characterization of soluble and putative membrane-bound UDP-glucuronic acid decarboxylase (OsUXS) isoforms in rice.	Arch. Biochem. Biophys.	431(2)	169-177	2004	_,_,_,_,_,_	UXS, UXS-3, OsUXS3,UXS-4, OsUXS4,OsUXS1, UXS-1,OsUXS5, UXS-5,OsUXS6, UXS-6,OsUXS2, UXS-2, Osl381, l381
21836	11444698	Swidzinski,J.A., Zaplachinski,S.T., Chuong,S.D., Wong,J.F. and Muench,D.G.	Molecular characterization and expression analysis of a highly conserved rice mago nashil homolog.	Genome	44(3)	394-400	2001	_	mago, OsMAGO2, MAGO2 
21837	15918879	Tabuchi,M., Sugiyama,K., Ishiyama,K., Inoue,E., Sato,T., Takahashi,H. and Yamaya,T.	Severe reduction in growth rate and grain filling of rice mutants lacking OsGS1;1, a cytosolic glutamine synthetase1;1.	Plant J.	42(5)	641-651	2005	GLN1;2,GLN1;1,GLN1;3	OsGLN1;2, GSr, RGS8, OsGS1;2, GS1;2, GS1, OsGS1-2, GS1-2, OsGS1.2, GS1.2,OsGLN1;1, GS1, RGS28, OsGS1;1, GS1;1, OsGS, GS1, OsGS1, GLN1-1, OsGS1-1, GS1-1, GS1.1, OsGS1.1,OsGLN1;3, OsGS1;3, GS1;3
21839	9988639	Tahir,M., Kanegae,H. and Takano,M.	Phytochrome C (PHYC) gene in rice : Isolation and characterization of a complete coding sequence (Accession No. AB018442) (PGR98-210)	Plant Physiol.	118(4)	1535	1998		
21840	10437831	Takabatake,R., Hata,S., Taniguchi,M., Kouchi,H., Sugiyama,T. and Izui,K.	Isolation and characterization of cDNAs encoding mitochondrial phosphate transporters in soybean, maize, rice, and Arabidopis.	Plant Mol. Biol.	40(3)	479-486	1999		
21841	7948880	Takahashi,R., Joshee,N. and Kitagawa,Y.	Induction of chilling resistance by water stress, and cDNA sequence analysis and expression of water stress-regulated genes in rice.	Plant Mol. Biol.	26(1)	339-352	1994	WSI18,LIP5,WSI76	OsLEA14, OsLEA14a, OsLEA14b, wsi18, pwsi18, OsWsi18, OsLEA14/WSI18,OsLEA24, LEA24, WSI724, OsWSI724, OsLIP5,wsi76, OsLEA24/OsGolS2, OsGolS2/OsLEA24, OsLEA24, OsGolS2, GolS2, LEA24, OsGolS1, GolS1, OsGOLS2, GOLS2
21844	11416158	Takahashi,Y., Shomura,A., Sasaki,T. and Yano,M.	Hd6, a rice quantitative trait locus involved in photoperiod sensitivity, encodes the alpha subunit of protein kinase CK2.	Proc. Natl. Acad. Sci. U.S.A.	98(14)	7922-7927	2001	HD16,HD6	Hd16, EL1, CK1, Hd16/CKI, Hd16/EL1,Hd6(t)*, OSCKA2, OsCKA2, CKA2, OsCKA2-1, CKA2-1, Hd6/CK2alpha, CK2alpha
21845	12028574	Takai,R., Matsuda,N., Nakano,A., Hasegawa,K., Akimoto,C., Shibuya,N. and Minami,E.	EL5, a rice N-acetylchitooligosaccharide elicitor-responsive RING-H2 finger protein, is a ubiquitin ligase which functions in vitro in co-operation with an elicitor-responsive ubiquitin-conjugating enzyme, OsUBC5b.	Plant J.	30(4)	447-455	2002	EL5,UBC5B,UBC5A	EL5.1, EL5.2, EL5.3, EL5.4, EL5.5, EL5.6,  OsRING64, RING64,OsUBC5b, OsUBC15, UBC15,OsUBC5a, OsUBC14, UBC14
21846	1840621	Takaiwa,F. and Oono,K.	Genomic DNA sequences of two new genes for new storage protein glutelin in rice.	Jpn. J. Genet.	66(2)	161-171	1991	GLU6,GLUA3	Glu6*(GluA4), Glu6, GluA4, GluA-4,Glua3*, GLUA-3, GT22, GT3, Glu21, GluA-3, OsEnS-47, EnS-47, GLU3
21847	6087286	Takaiwa,F., Oono,K. and Sugiura,M.	The complete nucleotide sequence of a rice 17S rRNA gene.	Nucleic Acids Res.	12(13)	5441-5448	1984	17S  rRNA	rrn17
21848		Takaiwa,F., Oono,K. and Sugiura,M.	Nucleotide sequence of the 17S-25S spacer region from rice rDNA	Plant Mol. Biol.	4(6)	355-364	1985	17S  rRNA,25S rRNA,5.8S rRNA	rrn17,25S rRNA,5.8S rRNA
21849	3902573	Takaiwa,F., Oono,K., Iida,Y. and Sugiura,M.	The complete nucleotide sequence of a rice 25S.rRNA gene.	Gene	37(1-3)	255-259	1985	_	
21850		Takaiwa,F., Ebinuma,H., Kikuchi,S. and Oono,K.	Nucleotide sequence of a rice glutelin gene	FEBS Lett.	221	43-47	1987	GLUA2	Glua2*, Glua2, GLUA-2, GluA-2, Glu20, GluA2, OsEnS-137
21851		Takaiwa,F., Kikuchi,S. and Oono,K.	A rice glutelin gene family - A major type of glutelin mRNAs can be divided into two classes	Mol. Gen. Genet.	208	15-22	1987	GLU1,GLU2	Glu1(Srp1, Gt2), Srp, Gt2, Glu1,Glu2*(Gt1), Gt1, Glu2
21852	2726459	Takaiwa,F., Kikuchi,S. and Oono,K.	The complete nucleotide sequence of new type cDNA coding for rice storage protein glutelin.	Nucleic Acids Res.	17(8)	3289	1989	GLU4	Glu4*, Glu4, OsGLU4
21853	2103482	Takaiwa,F., Kikuchi,S. and Oono,K.	The complete nucleotide sequence of the intergenic spacer between 25S and 17S rDNAs in rice.	Plant Mol. Biol.	15(6)	933-935	1990	17S  rRNA,25S rRNA	rrn17,25S rRNA
21854	1888896	Takaiwa,F., Oono,K. and Kato,A.	Analysis of the 5' flanking region responsible for the endosperm-specific expression of a rice glutelin chimeric gene in transgenic tobacco.	Plant Mol. Biol.	16(1)	49-58	1991	GLUA2	Glua2*, Glua2, GLUA-2, GluA-2, Glu20, GluA2, OsEnS-137
21855	1680490	Takaiwa,F., Oono,K., Wing,D. and Kato,A.	Sequence of three members and expression of a new major subfamily of glutelin genes from rice.	Plant Mol. Biol.	17(4)	875-885	1991	GLUB1,GLUB3.P,GLU7	GluB1, GluB1-A, GluB-1a, GluB-1, OsGluB1, GluB-1b, OsGluB-1b, GLUB1B,GluB-3.P, GluB-3,Glu7*(GluB2), Glu7, GluB2, GLUB2, GLUB-2, GluB-2, GluB-7, GLUB7
21856	10890535	Takakura,Y., Ito,T., Saito,H., Inoue,T., Komari,T. and Kuwata,S.	Flower-predominant expression of a gene encoding a novel class I chitinase in rice (Oryza sativa L.).	Plant Mol. Biol.	42(6)	883-897	2000	CHIA1;175	OsChia1;175, PC, Cht7, OsChia1d, Chia1d 
21857	9870704	Takano,M., Kajiya-Kanegae,H., Funatsuki,H. and Kikuchi,S.	Rice has two distinct classes of protein kinase genes related to SNF1 of Saccharomyces cerevisiae, which are differently regulated in early seed development.	Mol. Gen. Genet.	260(4)	388-394	1998	OSK3,OSK2,OSK4,OSK1	osk3, OsATG1b, ATG1B, OSK5, osk5, OSK35, SnRK1b, OsK35, OsSnRK1.1, SnRK1.1, OsSnRK1alphaB, SnRK1alphaB,osk2,osk4, OsK4, OsATG1c, ATG1C, SnRK1B, snrk1b, SnRK1B/OSK24, OSK24, OsK24, OsSNRK1b, OsSnRK1.4, SnRK1.4, OsSnRK1alphaC, SnRK1alphaC,osk1, SnRK1A, OsSnRK1A, OsSNRK1a, SnRK1A/OSK1, SnRK1a, OsSnRK1.2, SnRK1.2, OsSnRK1alphaA, SnRK1alphaA
21858	16278346	Takano,M., Inagaki,N., Xie,X., Yuzurihara,N., Hihara,F., Ishizuka,T., Yano,M., Nishimura,M., Miyao,A., Hirochika,H. and Shinomura,T.	Distinct and cooperative functions of phytochromes a, B, and C in the control of deetiolation and flowering in rice.	Plant Cell	17(12)	3311-3325	2005	PHYA,LHD3,PHYB	phyA, PHYA* (phyA), PHYA*, Phya, PHY18, phy 18, OsPHYA ,PHYC, OsPHYC, OsPHYCa, OsPHYCb, OsLHD3,phyB, PHYB1, OsPHYB, OsphyB, OsYHB, YHB, OsPHYB/OsYHB
21859	10503544	Takeda,Y., Hatano,S., Sentoku,N. and Matsuoka,M.	Homologs of animal eyes absent (eya) genes are found in higher plants.	Mol. Gen. Genet.	262(1)	131-138	1999	EYA1	OsEya1, OSEya1, OSEYA1
21861	11950970	Takemoto,Y., Coughlan,S.J., Okita,T.W., Satoh,H., Ogawa,M. and Kumamaru,T.	The rice mutant esp2 greatly accumulates the glutelin precursor and deletes the protein disulfide isomerase.	Plant Physiol.	128(4)	1212-1222	2002	PDIL1-1,BIP1,CNX,ESP2	OsPDIL1;1, PDIL1;1, PDIL 1-1, PDI, OsPDIL1-1, OsTrx28, Trx28,OsBiP1, BiP1, BiP, Bip3, OsBiP3, BIP1/OsBIP3, OsMed37_2, Med37_2 ,OsCNX, OsCNX1, CNX1,esp2(rsp2), rsp2, esp2, PDIL1-1
21862	15345035	Talbert,P.B., Bryson,T.D. and Henikoff,S.	Adaptive evolution of centromere proteins in plants and animals.	J. Biol.	3(4)	18	2004	CENP-C	OsCENP-C
21863	7599652	Tamaoki,M., Tsugawa,H., Minami,E., Kayano,T., Yamamoto,N., Kano-Murakami,Y. and Matsuoka,M.	Alternative RNA products from a rice homeobox gene.	Plant J.	7(6)	927-938	1995	OSH45	OSH42, OSH44, H45
21864	15705958	Tanabe,S., Ashikari,M., Fujioka,S., Takatsuto,S., Yoshida,S., Yano,M., Yoshimura,A., Kitano,H., Matsuoka,M., Fujisawa,Y., Kato,H. and Iwasaki,Y.	A Novel Cytochrome P450 Is Implicated in Brassinosteroid Biosynthesis via the Characterization of a Rice Dwarf Mutant, dwarf11, with Reduced Seed Length.	Plant Cell	17(3)	776-790	2005	D2,DWARF4L,D11	d2, dwf2, CYP90D2, D2/CYP90D2, OsD2, SMG11, OsSMG11, D2/SMG11, OsD2a, OsD2b,OsDWARF4L,d11(d8), dwf10, d8, D11/CYP724B1, d11, CYP724B1, GNS4, OsD11, PMM1, OsPMM1, PMM1/D11, NBG4, OsCPB1, CPB1, CPB1/D11
21865	7610165	Tanaka,K., Ohnishi,S., Kishimoto,N., Kawasaki,T. and Baba,T.	Structure, organization, and chromosomal location of the gene encoding a form of rice soluble starch synthase.	Plant Physiol.	108(2)	677-683	1995	SSI	OsSSI, SSS 1, SSS1, SS1, OsSS1, SSSI, OsSSSI
21866	9150612	Tanaka,Y., Makishima,T., Sasabe,M., Ichinose,Y., Shiraishi,T., Nishimoto,T. and Yamada,T.	dad-1, A putative programmed cell death suppressor gene in rice.	Plant Cell Physiol.	38(3)	379-383	1997	_	dad-1, DAD-1, DAD1
21867	15122023	Tang,J., Xia,H., Cao,M., Zhang,X., Zeng,W., Hu,S., Tong,W., Wang,J., Wang,J., Yu,J., Yang,H. and Zhu,L.	A Comparison of Rice Chloroplast Genomes.	Plant Physiol.	135(1)	412-420	2004	PSAC,NDHE,RPS14,_,RPS18,RPS19,RPOC1,_,PSAB,NDHI,PSBA,_,PSBC,_,RPS11,PSAA,RPS4,RPS7,NDHG,RPL23,RPS3,PSBN,_,_,NDHK,PSBI,PSBE,NDHJ,RPL22,NDHC,RPL36,YCF4,RPL33,CLPP,INFA,_,NDHF,RPS7,_,_,NDHH,PSBF,RPL23,RPL32,RPL2,PSBK,PSBM,RPS3,RPS15,RPS15,RPS2,RPL16,_,PSBD,PSBH,RPS8,RPL14,NDHD,PETE,RPOA,RPL2,PETD,RBCL,PSBB,RPL2,PETA,RPOB	psaC, OsPSAC,ndhE,rps14 ,matK, ORF542 ,rps18,rps19,rpoC1, RPO beta', RPObeta', OsRPOC1,rpoC2,PsaB, psaB, PsAA2, psaA2,ORF178, ndhI,PsbA, psbA, OsPsbA, PSBD1, OsPSBD1, psbD1,rpl2,psbC, cp43, OsPSBC, OsCP43,atpE,rps11,PsaA, psaA, PsAA1, psaA1,rps4 ,rps7,ndhG,rpl23,rps3,psbN,ORF321, ccsA,atpH,psbG, ndhK,psbI,psbE,ORF159, ndhJ,rpl22,ndhC,rpl36,Ycf4, ORF185,rpl33,ORF216, ClpP, clpP,infA,ORF106, accD,ndhF,rps7,atpI,ORF56, ndhH,ORF393, ndhH,psbF,rpl23,rpl32, ORF63,rpl2,psbK,psbM,rps3,rps15,rps15,rps2,rpl16,atpA,psbD, D2, OsPsbD1, OsPsbD2,psbH, psbF ,rps8,rpl14,ndhD, NdhD, NDH4, NADH4,petE, petG,rope, rpoalpha, Rpoalpha, rope, RpoA ,rpl2,petD, OsPETD,rbcL, rbcA, OsrbcL,psbB, OsPSBB,rpl2,petA, Cytf, cytF, Cyt f, OsPETA,rpoB, RpoB, Rpobeta
21870	10715324	Tarchini,R., Biddle,P., Wineland,R., Tingey,S. and Rafalski,A.	The complete sequence of 340 kb of DNA around the rice Adh1-adh2 region reveals interrupted colinearity with maize chromosome 4.	Plant Cell	12(3)	381-391	2000	MERMITE,ADH2,MAR1,ADH1	Mermite,Adh2*, Adh2, OsADH2,Osmar1,Adh1, Adh1/2, adh1/adh2, OsADH1
21871	14513380	Teerawanichpan,P., Chandrasekharan,M.B., Jiang,Y., Narangajavana,J. and Hall,T.C.	Characterization of two rice DNA methyltransferase genes and RNAi-mediated reactivation of a silenced transgene in rice callus.	Planta.	218(3)	337-349	2004	MET1A,MET1B	OsMET1a, OsMET1-1, MET1a, MET1-1, OsMET1, OsDMT702, DMT702,OsMET1b, OsMET1-2, MET1b, MET1
21872	15599508	Teixeira,F.K., Menezes-Benavente,L., Margis,R. and Margis-Pinheiro,M.	Analysis of the molecular evolutionary history of the ascorbate peroxidase gene family: inferences from the rice genome.	J. Mol. Evol.	59(6)	761-770	2004	APX2,APX6,APX4,APX3,APX7,APX8,APX1,APX5	OsAPX2, OsAPx02, APXb, OsAPx2, OSAPX2, APx2, cAPX, OsAPX1, APX1,OsAPx6, OsAPx06, OSAPX6, APx6,OsAPx4, OsAPx04, OSAPX4, APx4, pAPX4,OsAPx3, OsAPx03, OSAPX3, APx3, mAPX,OsAPx7, OsAPx07, OSAPX7, APx7, sAPX,OsAPx8, OsAPx08, OSAPX8, APx8, OsAPX8,OsAPX1, APXa, OsAPXa, OsAPx01, OsAPx1, OSAPX1, APx1, cAPX, APX2, cAPXa, OscAPXa,OsAPx5, OsAPx05, OSAPX5, APx5
21873	7808393	Tenzen,T., Matsuda,Y., Ohtsubo,H. and Ohtsubo,E.	Transposition of Tnr1 in rice genomes to 5'-PuTAPy-3' sites, duplicating the TA sequence.	Mol. Gen. Genet.	245(4)	441-448	1994	TNR1	Tnr1
21874	8541663	Terada,Y., Aoki,H., Tanaka,T., Morikawa,H. and Ida,S.	Cloning and nucleotide sequence of a leaf ferredoxin-nitrite reductase cDNA of rice.	Biosci. Biotechnol. Biochem.	59(11)	2183-2185	1995	PSR1	PSR1, NiR, OsNiR, OsNIR1, NIR1, FD-NiR, OsNiR2
21875	15653803	Teranishi,M., Iwamatsu,Y., Hidema,J. and Kumagai,T.	Ultraviolet-B sensitivities in Japanese lowland rice cultivars: cyclobutane pyrimidine dimer photolyase activity and gene mutation.	Plant Cell Physiol.	45(12)	1848-1856	2004	CPD	qUVR-10, OsPHR, PHR, OsCPD
21876	12068121	Terol,J., Bargues,M., Carrasco,P., Perez-Alonso,M. and Paricio,N.	Molecular characterization and evolution of the protein phosphatase 2A B' regulatory subunit family in plants.	Plant Physiol.	129(2)	808-822	2002	PP2A-B'ETA,PP2A-B'GAMMA,PP2A-B'lambda,PP2A-B'THETA,PP2A-B'KAPPA,PP2A-B'ZETA	OsPP2A-B'eta, OsB'eta,OsPP2A-B'gamma, OsB'gamma,OsPP2A-B'lambda, OsB'lambda,OsPP2A-B'theta, OsB'theta, PP2A-B'theta, OsPP2A-B'theta, OsB'theta,OsPP2A-B'kappa, OsB'kappa, B'kappa-PP2A,OsPP2A-B'zeta, OsB'zeta
21877	9804992	Terui,Y., Tsutsumi,K., Kidou,S., Sawazaki,T., Kuroiwa,Y., Yamaki,M. and Ejiri,S.	A novel variant of translation elongation factor-1beta: isolation and characterization of the rice gene encoding EF-1beta2.	Biochim. Biophys. Acta	1442(2-3)	369-372	1998	EEF1B2	eEF-1beta2, EF-1beta2
21878	11759839	Thakur,J.K., Tyagi,A.K. and Khurana,J.P.	OsIAA1, an Aux/IAA cDNA from rice, and changes in its expression as influenced by auxin and light.	DNA Res.	8(5)	193-203	2001	IAA13	OsIAA13, OsIAA1, OsiIAA1
21879	14527713	Thakur,J.K., Malik,M.R., Bhatt,V., Reddy,M.K., Sopory,S.K., Tyagi,A.K. and Khurana,J.P.	A POLYCOMB group gene of rice (Oryza sativa L. subspecies indica), OsiEZ1, codes for a nuclear-localized protein expressed preferentially in young seedlings and during reproductive development.	Gene	314	1-13	2003	IEZ1	OsiEZ1, OsSET1, SET1, iEZ1, OsEZ1/OsiEZ1, OsEZ1, EZ1, ez1, OsSET15, SDG718, DLN84, OsDLN84
21880	16139905	Thakur,J.K., Jain,M., Tyagi,A.K. and Khurana,J.P.	Exogenous auxin enhances the degradation of a light down-regulated and nuclear-localized OsiIAA1, an Aux/IAA protein from rice, via proteasome.	Biochim. Biophys. Acta	1730(3)	196-205	2005	IAA13	OsIAA13, OsIAA1, OsiIAA1
21881	6092265	Thomas,G. and Padayatty,J.D.	Restriction map &amp; partial sequence of a rice DNA fragment carrying histone genes H2A, H2B &amp; H4.	Indian J. Biochem. Biophys.	21(1)	1-6	1984	_,_,_	H2A,H2B,H4
21882	15258268	Thorlby,G., Fourrier,N. and Warren,G.	The SENSITIVE TO FREEZING2 gene, required for freezing tolerance in Arabidopsis thaliana, encodes a beta-glucosidase.	Plant Cell	16(8)	2192-2203	2004	BGLU36	Os11bglu36, Os11Bglu36, SFR2, sfr2
21883		Tian,X.H., Li,X.P., Zhou,H.L., Zhang,J.S., Gong,Z.Z. and Chen,S.Y.	OsDREB4 genes in rice encode AP2-containing proteins that bind specifically to the dehydration-responsive element	J. Integr. Plant Biol.	47(4)	467-476	2005	DREB1E,ERF38,ERF33	OsDREB1E, OsERF030, OsERF#030, OsERF30, ERF30, AP2/EREBP#160, AP2/EREBP160, OsDREB1-1,OsERF#038, OsERF038, OsERF38, AP2/EREBP#082, AP2/EREBP82, OsDREB4-1,OsERF#033, OsERF033, OsERF33, AP2/EREBP#040, AP2/EREBP40, OsDREB4-2
21885	10467032	To,K.Y., Suen,D.F. and Chen,S.C.	Molecular characterization of ribulose-1,5-bisphosphate carboxylase/oxygenase activase in rice leaves.	Planta.	209(1)	66-76	1999	RCA	OsRcaII, rca, rcaII, OsRcaI, RCAI, ME137, OsRCA1, RCA, RCAalpha, OsRCAalpha, OsRCAbeta
21886	10408441	Tomitani,A., Okada,K., Miyashita,H., Matthijs,H.C., Ohno,T. and Tanaka,A.	Chlorophyll b and phycobilins in the common ancestor of cyanobacteria and chloroplasts.	Nature	400(6740)	159-162	1999	YGL10	CAO, OsCAO, CAO1, OsCAO1, Oslls1, Lls1, DVR, PGL
21887	11038054	Toyofuku,K., Kasahara,M. and Yamaguchi,J.	Characterization and expression of monosaccharide transporters (osMSTs) in rice.	Plant Cell Physiol.	41(8)	940-947	2000	MST1,MST2,MST3	OsMST1, OsSTP1, STP1,OsMST2, OsSTP2, STP2,OsMST3, OsSTP3, STP3
21888	9421493	Tozawa,Y., Tanaka,K., Takahashi,H. and Wakasa,K.	Nuclear encoding of a plastid sigma factor in rice and its tissue- and light-dependent expression.	Nucleic Acids Res.	26(2)	415-419	1998	YGL13	OsSIG1, SIG1, Os-SigA, OsSigA, Os Sig1, SIGA
21889	11500548	Tozawa,Y., Hasegawa,H., Terakawa,T. and Wakasa,K.	Characterization of rice anthranilate synthase alpha-subunit genes OASA1 and OASA2. Tryptophan accumulation in transgenic rice expressing a feedback-insensitive mutant of OASA1.	Plant Physiol.	126(4)	1493-1506	2001	ASA2,ASA1	OASA2 (=ASA2), OsASA2, OASA2, ASalpha2, OsASalpha2, OASA2,OASA1 (=ASA1), OsASA1, OASA1, OASA1(D323N), OASA1D
21890	1581572	Tseng,T.S., Yeh,K.W., Yeh,C.H., Chang,F.C., Chen,Y.M. and Lin,C.Y.	Two rice (Oryza sativa) full-length cDNA clones encoding low-molecular-weight heat-shock proteins.	Plant Mol. Biol.	18(5)	963-965	1992	HSP17.3,HSP16.9A	OsHsp17.3, OsHSP17.3, Oshsp17.3 ,Oshsp16.9A, OsHsp16.9A, HSP16.9A, OsHSP16.9A-CI
21891	1463854	Tsuchiya,T., Toriyama,K., Nasrallah,M.E. and Ejiri,S.	Isolation of genes abundantly expressed in rice anthers at the microspore stage.	Plant Mol. Biol.	20(6)	1189-1193	1992	OSC4,C6	Osc4, OsC4, Osg4B, OsLTPc1, OsLtpIII.1, C4,Osc6, Osg6B, OsG6B, OsLTPG25, OsLTPg25, OsLtpVII.1, Os C6
21892	7858214	Tsuchiya,T., Toriyama,K., Ejiri,S. and Hinata,K.	Molecular characterization of rice genes specifically expressed in the anther tapetum.	Plant Mol. Biol.	26(6)	1737-1746	1994	C6,OSC4	Osc6, Osg6B, OsG6B, OsLTPG25, OsLTPg25, OsLtpVII.1, Os C6,Osc4, OsC4, Osg4B, OsLTPc1, OsLtpIII.1, C4
21893	16367953	Tsugane,K., Maekawa,M., Takagi,K., Takahara,H., Qian,Q., Eun,C.H. and Iida,S.	An active DNA transposon nDart causing leaf variegation and mutable dwarfism and its related elements in rice.	Plant J.	45(1)	46-57	2006	ClpP5,GID1,NDART1-0,NDART1-1,NDART1-3(8),NDART1-3(6),NDART1-3(3-1),NDART1-3(3-2),NDART1-5,NDART1-6,NDART1-7,NDART1-9,NDART1-10,NDART1-11,NDART1-12,NDART(l)1-5,NDART(l)1-21,NDART(l)1-22,NDART(l)1-24,NDART(l)1-23,NDART(l)1-25,NDART(l)1-26,NDART1-101,NDART1-102,NDART1-103,NDART1-104,NDART1-201,ADART1-27,NDART1-2	OsClpP5,gid1, OsGID1, Thl, Os GID1,nDART1-0,nDART1-1,nDART1-3(8),nDART1-3(6),nDART1-3(3-1),nDART1-3(3-2),nDART1-5,nDART1-6,nDART1-7,nDART1-9,nDART1-10,nDART1-11,nDART1-12,nDart(l)1-5,nDart(l)1-21,nDart(l)1-22,nDart(l)1-24,nDart(l)1-23,nDart(l)1-25,nDart(l)1-26,nDart1-101,nDart1-102,nDart1-103,nDart1-104,nDart1-201,aDart1-27,nDART1-2
21894	14976253	Tsunoyama,Y., Ishizaki,Y., Morikawa,K., Kobori,M., Nakahira,Y., Takeba,G., Toyoshima,Y. and Shiina,T.	Blue light-induced transcription of plastid-encoded psbD gene is mediated by a nuclear-encoded transcription initiation factor, AtSig5.	Proc. Natl. Acad. Sci. U.S.A.	101(9)	3304-3309	2004	YGL13,SIG5	OsSIG1, SIG1, Os-SigA, OsSigA, Os Sig1, SIGA,OsSIG5, OsSig5, Os Sig5
21895	8163192	Tsutsumi,K., Kagaya,Y., Hidaka,S., Suzuki,J., Tokairin,Y., Hirai,T., Hu,D.L., Ishikawa,K. and Ejiri,S.	Structural analysis of the chloroplastic and cytoplasmic aldolase-encoding genes implicated the occurrence of multiple loci in rice.	Gene	141(2)	215-220	1994	ALDCA,ALDP	AldC-a,Aldo, OsALDO, ALDO, FBAase, OsFBAase, ALDOA, OsALDOA 
21896	16669102	Tzeng,S.-S., Yeh,K.W., Chen,Y.M. and Lin,C.-Y.	Two Oryza sativa genomic DNA clones 16.9-kilodalton heat shock proteins	Plant Physiol.	99(4)	1723-1725	1992	HSP16.9A,HSP16.9B	Oshsp16.9A, OsHsp16.9A, HSP16.9A, OsHSP16.9A-CI,Oshsp16.9B, OsHsp16.9B, HSP16.9B, OsHsp17.0, OsHSP16.9B-CI, OsHSP17.0, Hsp17.0, OsSHSP2, OsSTA3
21897		Uchimiya,H., Kidou,S., Shimazaki,T., Aotsuka,S., Takamatsu,S., Nishi,R., Hashimoto,H., Matsubayashi,Y., Kidou,N., Umeda,M. and Kato,A.	Random sequencing og cDNA librariesreveals a variety of expressed genes in cultured cells of rice (Oryza sativa L.)	Plant J.	2(6)	1005-1009	1992	CHT1,GF14F,ACP,_,_,_,_,_,_,_,_,_,_,_,_,_,RPL35,RPS21,_,_,_,ANT,RPL3A,AMY1B,RUBI3,CC1,_,_,NDPK1,EIF4D,_,PDC1,ADKA,_,PGK4,_,CALA,RSUS1,ADH1,LPS1,_,GAPC1,GRP3,EIF4A1	Cht1*(Chi1), Ch16, Cht1, CHT-1, CH16, RC24, OsChia1a, OsChia1, Chi1, Cht1*, Chi-1, Cht-1, Cht1, RCC1, OsCht-1, PR3, OsPR3,GF14f, SR14-3-3, OsGF14f, S94, ric1, 14-3-3f,,,,,,,,H2B,H3,,,,,,OsRPL35,rps21,,,,ant, ricANC1, ANC1,OsRPL3A, ARP1, ARP3,Amy1B*(RAmy1B), AMYC, RAmy1B, Amy2, Amy1B, Osamy-c, OSamy-c, OSamy--c ,rubi3, UBQ3,OsCc1, OsCc-1,rig, RPS15, OsRPS15,H4, OsH4,OsNDPK1, NDK, rNDK, NDK1, NDKR, NDK-1,eIF-4d, EIF4D, elF-4D, OseIF5A-2, eIF5A-2, EIF5A2,,pdc1*, pdc1, pdc4, pdc 1, PDC 1, OsPDC1,Adk-a, OsAdk-a, OsAK3, AK3,GOS2, OseIF1, OsGOS2, SUI1, PtfS ,PGK, OsPGK4,OsTCTP, TCTP, OsTCTPa, OsTCTPb, TPH,CALa*, Cal1, CaM-2, CAM2, CAM, OsCaM2, OsCam2, OsCaM1, CaM1,sus1, RSus1(t), SUS1, SS2, OsScS2, RSs2, RSus1, SuSy1, OsSUS1, RSS2, RSus2, OsRSUS1,Adh1, Adh1/2, adh1/adh2, OsADH1,SDH2, SDHB, sdhB, RPS14, rps14, sdh2-1, SDH2-RPS14, OsLPS1, OsSDH2-1 ,osppdka, ppdka,OsGapC1, OsGapC3,OsGRP3, RTP, RBP-152 ,eIF-4a, EIF4A, OseIF4A, eIF4A1, elF-4A, eIF4A-1, OsRH4
21898	12242007	Uchiyama,Y., Hatanaka,M., Kimura,S., Ishibashi,T., Ueda,T., Sakakibara,Y., Matsumoto,T., Furukawa,T., Hashimoto,J. and Sakaguchi,K.	Characterization of DNA polymerase delta from a higher plant, rice (Oryza sativa L.)	Gene	295	19-26	2002	POLD2,POLD1	OsPoldelta2, OspolD2,OsPoldelta1, OspolD1
21899	15206945	Uchiyama,Y., Kimura,S., Yamamoto,T., Ishibashi,T. and Sakaguchi,K.	Plant DNA polymerase lambda, a DNA repair enzyme that functions in plant meristematic and meiotic tissues.	Eur. J. Biochem.	271(13)	2799-2807	2004	FEN1,_	OsFEN1, OsFEN-1a, FEN-1,OsPol lambda
21900	15965242	Ueda,T., Sato,T., Hidema,J., Hirouchi,T., Yamamoto,K., Kumagai,T. and Yano,M.	qUVR-10, a Major Quantitative Trait Locus for Ultraviolet-B Resistance in Rice, Encodes Cyclobutane Pyrimidine Dimer Photolyase.	Genetics	171(4)	1941-1950	2005	CPD	qUVR-10, OsPHR, PHR, OsCPD
21901	7551587	Ueki,J., Morioka,S., Komari,T. and Kumashiro,T.	Purification and characterization of phospholipase D (PLD) from rice (Oryza sativa L.) and cloning of cDNA for PLD from rice and maize (Zea mays L.).	Plant Cell Physiol.	36(5)	903-914	1995	PLDalpha1,PLDALPHA3	RPLD1, PLD1, OsPLDalpha1, OsC2DP2, C2DP2,OsPLDalpha3, RPLD2, PLDalpha3, OsPLDeta1, PLD2, OsC2DP52, C2DP52
21902	10348696	Ullah,H., Robertson,D. and Fites,R.C.	A Gene for Thymidine Kinase in Plants (Accession No. AF066050). (PGR99-048)	Plant Physiol.	119(4)	1567	1999	_	TK
21904	8049371	Umeda,M., Hara,C., Matsubayashi,Y., Li,H.H., Liu,Q., Tadokoro,F., Aotsuka,S. and Uchimiya,H.	Expressed sequence tags from cultured cells of rice (Oryza sativa L.) under stressed conditions: analysis of transcripts of genes engaged in ATP-generating pathways.	Plant Mol. Biol.	25(3)	469-478	1994	ADH1,LPS1,PDC1,TPI,_,PFPB,25S rRNA,PGI1,_,_,_,GAPC1,PK3,_,_,PGK4	Adh1, Adh1/2, adh1/adh2, OsADH1,SDH2, SDHB, sdhB, RPS14, rps14, sdh2-1, SDH2-RPS14, OsLPS1, OsSDH2-1 ,pdc1*, pdc1, pdc4, pdc 1, PDC 1, OsPDC1,tpi*, tips, TI, OsTPI1, TPI1, OsTPI1.1, OsTPI1.2 ,,OsPFPB, OsPFP-B, PFP-B, PFPbeta,25S rRNA,Pgi1(Pgia), Pgia, Pgi_1, Pgi1, GPI-A, PHI-A, Pgi-a, PGI-a,,,,OsGapC1, OsGapC3,OsPK3, OsPK5, PK5,,,PGK, OsPGK4
21905	9230895	Umeda,M., Fujii,N., Manabe,Y. and Uchimiya,H.	Molecular and biochemical characterization of a proteasome subunit from rice and carrot cells.	Mol. Gen. Genet.	255(1)	19-27	1997	_	OsPAF1
21906	9091324	Umeda,M., Manabe,Y. and Uchimiya,H.	Phosphorylation of the C2 subunit of the proteasome in rice (Oryza sativa L.).	FEBS Lett.	403(3)	313-317	1997	_	OsPAF1
21907	10517318	Umeda,M., Iwamoto,N., Umeda-Hara,C., Yamaguchi,M., Hashimoto,J. and Uchimiya,H.	Molecular characterization of mitotic cyclins in rice plants.	Mol. Gen. Genet.	262(2)	230-238	1999	CYCB2;2,CYCA1;1,CYCB2;1	cycB2;2 (=cycOs2), cycB2;2, cycOs2, CycB2;2, CycOs2, CYCB2-2, CYCOS2, CycB2-Os2, CYCB2, CycB2;os;2, OsCycB2;2, Orysa;CycB2;2, OsCYCOS2, Os;cycB2;2, CYCB2.2, OsCYCB2.2,CycA1;1, CycA1;os;1, Orysa;CycA1;1, CYCA2.3, OscycA1;1, CYCA1-1, OsCYCA1-1,cycB2;1 (=cycOs1), cycB2;1, cycOs1, CycB2;1, CycOs1, CYCB2-1, CYCOS1, CycB2-Os1, CYCB2, CycB2;os;1, Orysa;CycB2;1, CycB2;os;1, OsCycB2;1
21908	10648822	Urano,J., Nakagawa,T., Maki,Y., Masumura,T., Tanaka,K., Murata,N. and Ushimaru,T.	Molecular cloning and characterization of a rice dehydroascorbate reductase.	FEBS Lett.	466(1)	107-111	2000	DHAR1	OsDHAR1, DHAR, cytDHAR, OscytDHAR, OsDHAR
21909	11139585	Usui,Y., Nakase,M., Hotta,H., Urisu,A., Aoki,N., Kitajima,K. and Matsuda,T.	A 33-kDa allergen from rice (Oryza sativa L. Japonica). cDNA cloning, expression, and identification as a novel glyoxalase I.	J. Biol. Chem.	276(14)	11376-11381	2001	GLYI-11	OsGLYI11, GLYI11, OsGLYII1.1, OsGLYI11.2, OsGLYI11.3, OsGLYI-11.2, Glb33
21910		Vaidyanathan,R., Kuruvilla,S. and Thomas,G.	Characterization and expression pattern of an abscisic acid and osmotic stress responsive gene from rice.	Plant Sci.	140(1)	21-30	1999	RBLS2,ASR2	ASR1, OsAsr1, OsASR3, ASR3, Asr3, OsRBLS2,OsAsr2, OsASR4, ASR4, OsASR6, ASR6
21911	8666248	Valdez-Alarcon,J.J., Ferrando,M., Salerno,G., Jimenez-Moraila,B. and Herrera-Estrella,L.	Characterization of a rice sucrose-phosphate synthase-encoding gene.	Gene	170(2)	217-222	1996	SPS1	sps1, OsSPS1, SPS
21913	8194762	Vignols,F., Lund,G., Pammi,S., Tremousaygue,D., Grellet,F., Kader,J.C., Puigdomenech,P. and Delseny,M.	Characterization of a rice gene coding for a lipid transfer protein.	Gene	142(2)	265-270	1994	LTP1	Ltp1, RLTP1
21914	9305762	Vignols,F., Wigger,M., Garcia-Garrido,J.M., Grellet,F., Kader,J.C. and Delseny,M.	Rice lipid transfer protein (LTP) genes belong to a complex multigene family and are differentially regulated.	Gene	195(2)	177-186	1997	_,_,_	OsLTP1.17, b1, LTP2, OsLtpI.17,b21,OsLTP1.18, OsLTP1, nsLTP1, a15, OsLtpI.18, LTPC2, OsLTPC2
21915	1379734	Voytas,D.F., Cummings,M.P., Koniczny,A., Ausubel,F.M. and Rodermel,S.R.	copia-like retrotransposons are ubiquitous among plants.	Proc. Natl. Acad. Sci. U.S.A.	89(15)	7124-7128	1992	_	
21916	12369618	Waller,F., Furuya,M. and Nick,P.	OsARF1, an auxin response factor from rice, is auxin-regulated and classifies as a primary auxin responsive gene.	Plant Mol. Biol.	50(3)	415-425	2002	ARF1,ARF16	OsARF1, arf1, OsARF23, ARF23,OsARF16, OsARF2, OsARF1
21917	14612572	Wang,A., Xia,Q., Xie,W., Datla,R. and Selvaraj,G.	The classical Ubisch bodies carry a sporophytically produced structural protein (RAFTIN) that is essential for pollen development.	Proc. Natl. Acad. Sci. U.S.A.	100(24)	14487-14492	2003	RAFTIN1	OsRAFTIN1, BURP13, OsBURP13, Os RAFTIN1
21918	1534703	Wang,A.Y., Yu,W.P., Juang,R.H., Huang,J.W., Sung,H.Y. and Su,J.C.	Presence of three rice sucrose synthase genes as revealed by cloning and sequencing of cDNA.	Plant Mol. Biol.	18(6)	1191-1194	1992	RSUS2,RSUS1,RSUS3	sus2, RSus2(t), SUS2, SS1, OsScS1, RSs1, RSus2, OsSUS2, RSS1, RSus1, OsSusy2, Susy2, OsRSUS1, RSUS1,sus1, RSus1(t), SUS1, SS2, OsScS2, RSs2, RSus1, SuSy1, OsSUS1, RSS2, RSus2, OsRSUS1,RSus3(t), SUS3, SS3, OsScS3, RSs3, RSus3, OsSUS3, RSS3, OsEnS-111, Susy3, OsSusy3
21919		Wang,C.S., Shastri,K., Wen,L., Huang,J.K., Sonthayanon,B., Muthukrishnan,S. and Reeck,G.R.	Heterogeneity in cDNA clones encoding rice glutelin	FEBS Lett.	222	135-138	1987	GLUA2	Glua2*, Glua2, GLUA-2, GluA-2, Glu20, GluA2, OsEnS-137
21920	14513364	Wang,G.D., Tian,P.F., Cheng,Z.K., Wu,G., Jiang,J.M., Li,D.B., Li,Q. and He,Z.H.	Genomic characterization of Rim2 / Hipa elements reveals a CACTA-like transposon superfamily with unique features in the rice genome.	Molecular Genetics & Genomics (Molecular General Genetics up to 2001)	270(3)	234-242	2003	_,RIM2-228,RIM2-248,RIM2-553,_,_,_,RIM2-M54,RIM2-M55,RIM2-M56,RIM2-M57,RIM2-M58,RIM2-M59,RIM2-M60,RIM2-M61,RIM2-M62,RIM2-M63,RIM2-M1,RIM2-M2,RIM2-M3,RIM2-M4,RIM2-M5,RIM2-M6,RIM2-M7,RIM2-M8,RIM2-M9,RIM2-M10,RIM2-M11,RIM2-M12,RIM2-M13,RIM2-M14,RIM2-M15,RIM2-M16,RIM2-M17,RIM2-M18,RIM2-M19,RIM2-M20,RIM2-M21,RIM2-M22,RIM2-M23,RIM2-M24,RIM2-M25,RIM2-M26,RIM2-M27,RIM2-M28,RIM2-M29,RIM2-M30,RIM2-M31,RIM2-M32,RIM2-M33,RIM2-M34,RIM2-M35,RIM2-M36,RIM2-M37,RIM2-M38,RIM2-M39,RIM2-M40,RIM2-M41,RIM2-M42,RIM2-M43,RIM2-M44,RIM2-M45,RIM2-M46,RIM2-M47,RIM2-M48,RIM2-M49,RIM2-M50,RIM2-M51,RIM2-M52,RIM2-M64,RIM2-M65,RIM2-M66,RIM2-M67,RIM2-M68,RIM2-M69,RIM2-M70,RIM2-M71,RIM2-M72,RIM2-M73,RIM2-M74,RIM2-M75,RIM2-M76,RIM2-M77,RIM2-M78,RIM2-M79,RIM2-M80,RIM2-M81,RIM2-M82,RIM2-M83,RIM2-M84,RIM2-M85,RIM2-M86,RIM2-M87,RIM2-M88,RIM2-M89,RIM2-M90,RIM2-M91,RIM2-M92,RIM2-M93,RIM2-M94,RIM2-M95,RIM2-M96,RIM2-M97,RIM2-M98,RIM2-M99,RIM2-M100,RIM2-M101,RIM2-M102,RIM2-M103,RIM2-M104,RIM2-M105,RIM2-M106,RIM2-M107,RIM2-M108,RIM2-M109,RIM2-M110,RIM2-M111,RIM2-M112,RIM2-M113,RIM2-M114,RIM2-M115,RIM2-M116,RIM2-M117,RIM2-M118,RIM2-M119,RIM2-M120,RIM2-M121,RIM2-M122,RIM2-M123,RIM2-M124,RIM2-M125,RIM2-M126,RIM2-M127,RIM2-M128,RIM2-M129,RIM2-M130,RIM2-M131,RIM2-M132,RIM2-M133,RIM2-M134,RIM2-M135,RIM2-M136,RIM2-M137,RIM2-M138,RIM2-M139,RIM2-M140,RIM2-M141,RIM2-M142,RIM2-M143,RIM2-M144,RIM2-M145,RIM2-M146,RIM2-M147,RIM2-M148,RIM2-M149,RIM2-M150,RIM2-M151,RIM2-M152,RIM2-M153,RIM2-M154,RIM2-M155,RIM2-M156,RIM2-M157,RIM2-M158,RIM2-M159,RIM2-M160,RIM2-M161,RIM2-M162,RIM2-M163,RIM2-M164,RIM2-M165,RIM2-M171,RIM2-M172,RIM2-M173,RIM2-M193,RIM2-M194,RIM2-M199,RIM2-M200,RIM2-M201,RIM2-M202,RIM2-M203,RIM2-M215,RIM2-M216,RIM2-M217,RIM2-M218,RIM2-M229,RIM2-M230,RIM2-M231,RIM2-M232,RIM2-M166,RIM2-M167,RIM2-M168,RIM2-M169,RIM2-M170,RIM2-M174,RIM2-M175,RIM2-M176,RIM2-M177,RIM2-M178,RIM2-M179,RIM2-M180,RIM2-M181,RIM2-M182,RIM2-M183,RIM2-M184,RIM2-M185,RIM2-M186,RIM2-M187,RIM2-M188,RIM2-M189,RIM2-M190,RIM2-M191,RIM2-M192,RIM2-M195,RIM2-M196,RIM2-M197,RIM2-M198,RIM2-M204,RIM2-M205,RIM2-M206,RIM2-M207,RIM2-M208,RIM2-M209,RIM2-M210,RIM2-M211,RIM2-M212,RIM2-M213,RIM2-M214,RIM2-M219,RIM2-M220,RIM2-M221,RIM2-M222,RIM2-M223,RIM2-M224,RIM2-M225,RIM2-M226,RIM2-M227,RIM2-M228,RIM2-M233,RIM2-M234,RIM2-M235,RIM2-M236,RIM2-M237,RIM2-M238,RIM2-M239,RIM2-M240,RIM2-M241,RIM2-M242,RIM2-M243,RIM2-M244,RIM2-M245,RIM2-M246,RIM2-M247,RIM2-M248,RIM2-M249,RIM2-M250,RIM2-M251,RIM2-M252,RIM2-M253,RIM2-M254,RIM2-M255,RIM2-M256,RIM2-M257,RIM2-M258,RIM2-M259,RIM2-M260,RIM2-M261,RIM2-M262,RIM2-M263,RIM2-M264,RIM2-M265,RIM2-M266,RIM2-M267,RIM2-M268,RIM2-M269,RIM2-M270,RIM2-M271,RIM2-M272,RIM2-M273,RIM2-M274,RIM2-M275,RIM2-M276,RIM2-M277,RIM2-M278,RIM2-M279,RIM2-M280,RIM2-M281,RIM2-M282,RIM2-M283,RIM2-M284,RIM2-M285,RIM2-M286,RIM2-M287,RIM2-M288,RIM2-M289,RIM2-M290,RIM2-M291,RIM2-M292,RIM2-M293,RIM2-M294,RIM2-M295,RIM2-M296,RIM2-M297,RIM2-M298,RIM2-M299,RIM2-M300,RIM2-M301,RIM2-M302,RIM2-M303,RIM2-M304,RIM2-M305,RIM2-M306,RIM2-M307,RIM2-M308,RIM2-M309,RIM2-M310,RIM2-M311,RIM2-M312,RIM2-M313,RIM2-M314,RIM2-M315,RIM2-M316,RIM2-M317,RIM2-M318,RIM2-M319,RIM2-M320,RIM2-M321,RIM2-M322,RIM2-M323,RIM2-M324,RIM2-M325,RIM2-M326,RIM2-M327,RIM2-M328,RIM2-M329,RIM2-M330,RIM2-M331,RIM2-M332,RIM2-M333,RIM2-M334,RIM2-M335,RIM2-M336,RIM2-M337,RIM2-M338,RIM2-M339,RIM2-M340,RIM2-M341,RIM2-M343,RIM2-M342,RIM2-M344,RIM2-M53	,Rim2-228,Rim2-248,Rim2-553,,,HRGP,Rim2-M54,Rim2-M55,Rim2-M56,Rim2-M57,Rim2-M58,Rim2-M59,Rim2-M60,Rim2-M61,Rim2-M62,Rim2-M63,Rim2-M1,Rim2-M2,Rim2-M3,Rim2-M4,Rim2-M5,Rim2-M6,Rim2-M7,Rim2-M8,Rim2-M9,Rim2-M10,Rim2-M11,Rim2-M12,Rim2-M13,Rim2-M14,Rim2-M15,Rim2-M16,Rim2-M17,Rim2-M18,Rim2-M19,Rim2-M20,Rim2-M21,Rim2-M22,Rim2-M23,Rim2-M24,Rim2-M25,Rim2-M26,Rim2-M27,Rim2-M28,Rim2-M29,Rim2-M30,Rim2-M31,Rim2-M32,Rim2-M33,Rim2-M34,Rim2-M35,Rim2-M36,Rim2-M37,Rim2-M38,Rim2-M39,Rim2-M40,Rim2-M41,Rim2-M42,Rim2-M43,Rim2-M44,Rim2-M45,Rim2-M46,Rim2-M47,Rim2-M48,Rim2-M49,Rim2-M50,Rim2-M51,Rim2-M52,Rim2-M64,Rim2-M65,Rim2-M66,Rim2-M67,Rim2-M68,Rim2-M69,Rim2-M70,Rim2-M71,Rim2-M72,Rim2-M73,Rim2-M74,Rim2-M75,Rim2-M76,Rim2-M77,Rim2-M78,Rim2-M79,Rim2-M80,Rim2-M81,Rim2-M82,Rim2-M83,Rim2-M84,Rim2-M85,Rim2-M86,Rim2-M87,Rim2-M88,Rim2-M89,Rim2-M90,Rim2-M91,Rim2-M92,Rim2-M93,Rim2-M94,Rim2-M95,Rim2-M96,Rim2-M97,Rim2-M98,Rim2-M99,Rim2-M100,Rim2-M101,Rim2-M102,Rim2-M103,Rim2-M104,Rim2-M105,Rim2-M106,Rim2-M107,Rim2-M108,Rim2-M109,Rim2-M110,Rim2-M111,Rim2-M112,Rim2-M113,Rim2-M114,Rim2-M115,Rim2-M116,Rim2-M117,Rim2-M118,Rim2-M119,Rim2-M120,Rim2-M121,Rim2-M122,Rim2-M123,Rim2-M124,Rim2-M125,Rim2-M126,Rim2-M127,Rim2-M128,Rim2-M129,Rim2-M130,Rim2-M131,Rim2-M132,Rim2-M133,Rim2-M134,Rim2-M135,Rim2-M136,Rim2-M137,Rim2-M138,Rim2-M139,Rim2-M140,Rim2-M141,Rim2-M142,Rim2-M143,Rim2-M144,Rim2-M145,Rim2-M146,Rim2-M147,Rim2-M148,Rim2-M149,Rim2-M150,Rim2-M151,Rim2-M152,Rim2-M153,Rim2-M154,Rim2-M155,Rim2-M156,Rim2-M157,Rim2-M158,Rim2-M159,Rim2-M160,Rim2-M161,Rim2-M162,Rim2-M163,Rim2-M164,Rim2-M165,Rim2-M171,Rim2-M172,Rim2-M173,Rim2-M193,Rim2-M194,Rim2-M199,Rim2-M200,Rim2-M201,Rim2-M202,Rim2-M203,Rim2-M215,Rim2-M216,Rim2-M217,Rim2-M218,Rim2-M229,Rim2-M230,Rim2-M231,Rim2-M232,Rim2-M166,Rim2-M167,Rim2-M168,Rim2-M169,Rim2-M170,Rim2-M174,Rim2-M175,Rim2-M176,Rim2-M177,Rim2-M178,Rim2-M179,Rim2-M180,Rim2-M181,Rim2-M182,Rim2-M183,Rim2-M184,Rim2-M185,Rim2-M186,Rim2-M187,Rim2-M188,Rim2-M189,Rim2-M190,Rim2-M191,Rim2-M192,Rim2-M195,Rim2-M196,Rim2-M197,Rim2-M198,Rim2-M204,Rim2-M205,Rim2-M206,Rim2-M207,Rim2-M208,Rim2-M209,Rim2-M210,Rim2-M211,Rim2-M212,Rim2-M213,Rim2-M214,Rim2-M219,Rim2-M220,Rim2-M221,Rim2-M222,Rim2-M223,Rim2-M224,Rim2-M225,Rim2-M226,Rim2-M227,Rim2-M228,Rim2-M233,Rim2-M234,Rim2-M235,Rim2-M236,Rim2-M237,Rim2-M238,Rim2-M239,Rim2-M240,Rim2-M241,Rim2-M242,Rim2-M243,Rim2-M244,Rim2-M245,Rim2-M246,Rim2-M247,Rim2-M248,Rim2-M249,Rim2-M250,Rim2-M251,Rim2-M252,Rim2-M253,Rim2-M254,Rim2-M255,Rim2-M256,Rim2-M257,Rim2-M258,Rim2-M259,Rim2-M260,Rim2-M261,Rim2-M262,Rim2-M263,Rim2-M264,Rim2-M265,Rim2-M266,Rim2-M267,Rim2-M268,Rim2-M269,Rim2-M270,Rim2-M271,Rim2-M272,Rim2-M273,Rim2-M274,Rim2-M275,Rim2-M276,Rim2-M277,Rim2-M278,Rim2-M279,Rim2-M280,Rim2-M281,Rim2-M282,Rim2-M283,Rim2-M284,Rim2-M285,Rim2-M286,Rim2-M287,Rim2-M288,Rim2-M289,Rim2-M290,Rim2-M291,Rim2-M292,Rim2-M293,Rim2-M294,Rim2-M295,Rim2-M296,Rim2-M297,Rim2-M298,Rim2-M299,Rim2-M300,Rim2-M301,Rim2-M302,Rim2-M303,Rim2-M304,Rim2-M305,Rim2-M306,Rim2-M307,Rim2-M308,Rim2-M309,Rim2-M310,Rim2-M311,Rim2-M312,Rim2-M313,Rim2-M314,Rim2-M315,Rim2-M316,Rim2-M317,Rim2-M318,Rim2-M319,Rim2-M320,Rim2-M321,Rim2-M322,Rim2-M323,Rim2-M324,Rim2-M325,Rim2-M326,Rim2-M327,Rim2-M328,Rim2-M329,Rim2-M330,Rim2-M331,Rim2-M332,Rim2-M333,Rim2-M334,Rim2-M335,Rim2-M336,Rim2-M337,Rim2-M338,Rim2-M339,Rim2-M340,Rim2-M341,Rim2-M343,Rim2-M342,Rim2-M344,Rim2-M53
21921	10936527	Wang,J., Jiang,J. and Oard,J.H.	Structure, expression and promoter activity of two polyubiquitin genes from rice (Oryza sativa L.).	Plant Sci.	156(2)	201-211	2000	RUBQ2	rubq2
21922	16406238	Wang,J., Ming,F., Pittman,J., Han,Y., Hu,J., Guo,B. and Shen,D.	Characterization of a rice (Oryza sativa L.) gene encoding a temperature-dependent chloroplast omega-3 fatty acid desaturase.	Biochem. Biophys. Res. Commun.	340(4)	1209-1216	2006	FAD8	OsFAD8, Osfad8
21923	15915636	Wang,L., Pei,Z., Tian,Y. and He,C.	OsLSD1, a rice zinc finger protein, regulates programmed cell death and callus differentiation.	Mol. Plant Microbe Interact.	18(5)	375-384	2005	LSD1	OsLSD1, OsLOL1, OsLSD1.1, LSD1.1
21924	1386537	Wang,M.B., Boulter,D. and Gatehouse,J.A.	A complete sequence of the rice sucrose synthase-1 (RSs1) gene.	Plant Mol. Biol.	19(5)	881-885	1992	RSUS2	sus2, RSus2(t), SUS2, SS1, OsScS1, RSs1, RSus2, OsSUS2, RSS1, RSus1, OsSusy2, Susy2, OsRSUS1, RSUS1
21927	14693376	Wang,R., Hong,G. and Han,B.	Transcript abundance of rml1, encoding a putative GT1-like factor in rice, is up-regulated by Magnaporthe grisea and down-regulated by light.	Gene	324	105-115	2004	RML1	rml1, OsRML1, OsMSL21, MSL21
21929	9154986	Wang,S., Zhang,Q., Maughan,P.J. and M.A.	Copia-like retrotransposons in rice: sequence heterogeneity, species distribution and chromosomal locations.	Plant Mol. Biol.	33(6)	1051-1058	1997	_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_	Rrt1,Rrt2,Rrt3,Rrt4,Rrt5,Rrt6,Rrt7,Rrt8,Rrt9,Rrt10,Rrt11,Rrt12,Rrt13,Rrt14,Rrt15,Rrt16,Rrt17,Rrt18,Rrt19,Rrt20,Rrt21,Rrt22A,Rrt22B,Rrt22C,Rrt23
21932	12920519	Wang,Y.J., Zhang,Z.G., He,X.J., Zhou,H.L., Wen,Y.X., Dai,J.X., Zhang,J.S. and Chen,S.Y.	A rice transcription factor OsbHLH1 is involved in cold stress response.	Theor. Appl. Genet.	107(8)	1402-1409	2003	BHLH1	OsbHLH1, bHLH1, OsbHLH062, bHLH062, bHLH62 
21933	10417726	Wang,Z.X., Yano,M., Yamanouchi,U., Iwamoto,M., Monna,L., Hayasaka,H., Katayose,Y. and Sasaki,T.	The Pib gene for rice blast resistance belongs to the nucleotide binding and leucine-rich repeat class of plant disease resistance genes.	Plant J.	19(1)	55-64	1999	PIB,PIBH8,PIB2	Pi b(Pi s), Pis, Pib, Pi-s, Pi-hy,Pib-H8, PibH8, OsPibH8,Pib2
21934	11725950	Wang,Z.X., Yamanouchi,U., Katayose,Y., Sasaki,T. and Yano,M.	Expression of the Pib rice-blast-resistance gene family is up-regulated by environmental conditions favouring infection and by chemical signals that trigger secondary plant defences.	Plant Mol. Biol.	47(5)	653-661	2001	PIB,PIBH8,_,_	Pi b(Pi s), Pis, Pib, Pi-s, Pi-hy,Pib-H8, PibH8, OsPibH8,HPibH8-1,HPibH8-2
21935	2216792	Wang,Z.Y., Wu,Z.L., Xing,Y.Y., Zheng,F.G., Guo,X.L., Zhang,W.G. and Hong,M.M.	Nucleotide sequence of rice waxy gene.	Nucleic Acids Res.	18(19)	5898	1990	WX1	wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx
21936		Wang,Z.Y., Zheng,F.Q., Gao,J.P., Wang,X.Q., Wu,M., Zhang,J.L. and Hong,M.M.	Identification of two transposon-like elements in rice Wx gene	Sci. China, Ser. B, Chem. Life Sci. Earth Sci.	37	437-447	1994	WX1	wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx
21937		Wasaki,J., Omura,M., Osaki,M., Ito,H., Matsui,H., Shinano,T. and Tadano,T.	Structure of a cDNA for an acid phosphatase from phosphate-deficient lupin (Lupinus albus L.) roots	Soil Sci. Plant Nutr.	45	439-449	1999		
21938	1627776	Washio,K. and Ishikawa,K.	Structure and expression during the germination of rice seeds of the gene for a carboxypeptidase.	Plant Mol. Biol.	19(4)	631-640	1992	CPD3	cbp3, R-CPD3, OsSCP6, SCP6
21939	8161571	Washio,K. and Ishikawa,K.	Cloning and sequencing of the gene for type I carboxypeptidase in rice.	Biochim. Biophys. Acta	1199(3)	311-314	1994	CPD1	cbp1, R-CPD1, CBP I, CBP1, OsSCP65, SCP65
21940	7972496	Washio,K. and Ishikawa,K.	Organ-specific and hormone-dependent expression of genes for serine carboxypeptidases during development and following germination of rice grains.	Plant Physiol.	105(4)	1275-1280	1994	CPD3,CPD3L,CPD1	cbp3, R-CPD3, OsSCP6, SCP6,R-CPD3L, cbp31, OsSCP39, SCP39,cbp1, R-CPD1, CBP I, CBP1, OsSCP65, SCP65
21941	10490396	Washio,K.	cDNAs encoding Dof-proteins that are present in germinated aleurone cells (Accession Nos. AB028129, AB028130, AB028131, AB028132, and AB028133). (PGR99-107)	Plant Physiol.	120(4)	1205-1207	1999	RPBF,RDD1,DOF4,DOF1,DOF5	OsDof3, OsDOF3, OsEnS-34, OsDof10, Dof10, OsDof-10, OsDOF1, DOF1, DOF3, OsRPBF, OsDOF7,OsDof2, OsDof9, Dof9, OsDof-9, DLN64, OsDLN64, OsDof8, Dof8,OsDof4, OsDof8, Dof8, OsDof-8, DOF8, OsDof10, Dof10,OsDof1,OsDof5, OsDof6, Dof6, OsDof-6, DOF6
21942	12012245	Watanabe,A. and Hirai,A.	Two uncoupling protein genes of rice ( Oryza sativa L.): molecular study reveals the defects in the pre-mRNA processing for the heat-generating proteins of the subtropical cereal.	Planta.	215(1)	90-100	2002	_,UCP1,AOX1A	OsUCP2,OsUCP1,Ao1-1, AOX1a, OsAOX1a, AOX 1a
21943	1885617	Watanabe,H., Abe,K., Emori,Y., Hosoyama,H. and Arai,S.	Molecular cloning and gibberellin-induced expression of multiple cysteine proteinases of rice seeds (oryzains).	J. Biol. Chem.	266(25)	16897-16902	1991	ORYC,ORYB,ORYA	OsORYC,OsRD21, RD21, OsORYB,ocp*, ocp, OsOCP, OsORYA
21945	16413588	Watanabe,K., Suzuki,K. and Kitamura,S.	Characterization of a GDP-d-mannose 3'',5''-epimerase from rice.	Phytochemistry	67(4)	338-346	2006	GME	GME
21946	9171081	Weihe,A., Hedtke,B. and Borner,T.	Cloning and characterization of a cDNA encoding a bacteriophage-type RNA polymerase from the higher plant Chenopodium album.	Nucleic Acids Res.	25(12)	2319-2325	1997	RPOTP	OsRpo Tp, OsRpoTp, NEP, RpoTp, rpoTP2
21947	12177502	Wen,J.Q., Oono,K. and Imai,R.	Two Novel Mitogen-Activated Protein Signaling Components, OsMEK1 and OsMAP1, Are Involved in a Moderate Low-Temperature Signaling Pathway in Rice.	Plant Physiol.	129(4)	1880-1891	2002	MKK6,MSRMK2,LIP19,MAP3,MAPK4	OsMKK6, OsMEK1, MEK1, OsMAPKK6, MAPKK6, OsMPKK6, MPKK6, OsMAP1, MAP1,OsMSRMK2, OsMAPK5, OsMAP1, OsMPK3, OsBIMK1, OsMAPK2, MPK5, BIMK1, MAPK2, MAPK5, MPK3, OsMPK5, OsMAPK3, OsMAPK5b, MAPK3,Lip19, lip19, OsLIP9, OsbZIP38, bZIP38,OsMAPK33, OsMPK14, OsMAPK2, OsMAP3, OsMAPK14, OsMPK3, MAPK33, MPK14, MAPK2, MAPK14, MPK3, OsMAPK3, MAPK3,OsMAPK4, OsMAP2, OsMSRMK3, OsMPK4, OsMPK7, MAP2, MSRMK3, MPK4, MPK7, MAPK7, OsMAPK7
21948	2587279	Wen,L., Huang,J.K., Johnson,B.H. and Reeck,G.R.	Nucleotide sequence of a cDNA that encodes a rice glutelin.	Nucleic Acids Res.	17(22)	9490	1989	GLUB1	GluB1, GluB1-A, GluB-1a, GluB-1, OsGluB1, GluB-1b, OsGluB-1b, GLUB1B
21949	8310050	Wen,T.N., Shyur,L.F., Su,J.C. and Chen,C.S.	Nucleotide sequence of a rice (Oryza sativa) prolamin storage protein gene, RP6.	Plant Physiol.	101(3)	1115-1116	1993	PRO13A.1	RP6, Prol-18, OsEnS-93, pro13a.1, OsPRO13A.1, PROLM25
21950	15299118	Wilderman,P.R., Xu,M., Jin,Y., Coates,R.M. and Peters,R.J.	Identification of syn-pimara-7,15-diene synthase reveals functional clustering of terpene synthases involved in rice phytoalexin/allelochemical biosynthesis.	Plant Physiol.	135(4)	2098-2105	2004	KS4	OsKS4, KS4, KSL4, OsKSL4, DTS2, OsDTS2, OsTPS16, TPS16, TPS8, OsTPS8
21951	2535550	Wilkins,T.A. and Raikhel,N.V.	Expression of rice lectin is governed by two temporally and spatially regulated mRNAs in developing embryos.	Plant Cell	1(5)	541-549	1989	_	
21953	11779837	Wright,D.A. and Voytas,D.F.	Athila4 of Arabidopsis and Calypso of soybean define a lineage of endogenous plant retroviruses.	Genome Res.	12(1)	122-131	2002	_,_	,Gag-Pol
21957	15037733	Wu,J., Yamagata,H., Hayashi-Tsugane,M., Hijishita,S., Fujisawa,M., Shibata,M., Ito,Y., Nakamura,M., Sakaguchi,M., Yoshihara,R., Kobayashi,H., Ito,K., Karasawa,W., Yamamoto,M., Saji,S., Katagiri,S., Kanamori,H., Namiki,N., Katayose,Y., Matsumoto,T. and Sasaki,T.?	Composition and structure of the centromeric region of rice chromosome 8.	Plant Cell	16(4)	967-976	2004		
21958	12909345	Wu,Q., Zhang,W., Pwee,K.-H. and Kumar,P.P.	Cloning and characterization of rice HMGB1 gene	Gene	312	103-109	2003	HMGB1	OsHMGB1, OsMNB1B, MNB1B
21959	12590928	Wu,Q., Zhang,W., Pwee,K.H. and Kumar,P.P.	Rice HMGB1 protein recognizes DNA structures and bends DNA efficiently.	Arch. Biochem. Biophys.	411(1)	105-111	2003	HMGB1	OsHMGB1, OsMNB1B, MNB1B
21960	2726464	Wu,S.C., Vegh,Z., Wang,X.M., Tan,C.C. and Dudits,D.	The nucleotide sequences of two rice histone H3 genes.	Nucleic Acids Res.	17(8)	3297	1989	_,_	H3R-21,H3R-11
21962	10470849	Xiao,C., Xin,H., Dong,A., Sun,C. and Cao,K.	A novel calmodulin-like protein gene in rice which has an unusual prolonged C-terminal sequence carrying a putative prenylation site.	DNA Res.	6(3)	179-181	1999	CAM61	CaM61, OsCaM61, OsCML1, OsCML1d
21963		Xiao,F.H. and Xue,G.P.	Analysis of the promoter activity of late embryogenesis abundant protein genes in barley seedlings under conditions of water deficit	Plant Cell Rep.	20(7)	667-673	2001	WSI18,RAB16B	OsLEA14, OsLEA14a, OsLEA14b, wsi18, pwsi18, OsWsi18, OsLEA14/WSI18,rab21, OsLEA28, OsRAB16D, OsRab16d, Rab16d, OsRAB16b, XERO1, OsXERO1, OsRD22, RD22
21964	3412915	Xie,Y. and Wu,R.	Nucleotide sequence of a ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit gene (rbcS) in rice.	Nucleic Acids Res.	16(15)	7749	1988	RBCS	rbcS, OsRbcS, RBCS-C, RbcS2, OsRBCS2, RbcS1, OsRbcS2, OsrbcS1
21965	2562760	Xie,Y. and Wu,R.	Rice alcohol dehydrogenase genes: anaerobic induction, organ specific expression and characterization of cDNA clones.	Plant Mol. Biol.	13(1)	53-68	1989	ADH1,ADH2	Adh1, Adh1/2, adh1/adh2, OsADH1,Adh2*, Adh2, OsADH2
21966	2332167	Xie,Y. and Wu,R.	Molecular analysis of an alcohol dehydrogenase-encoding genomic clone (adh2) from rice.	Gene	87(2)	185-191	1990	ADH2	Adh2*, Adh2, OsADH2
21968	12615946	Xiong,L. and Yang,Y.	Disease Resistance and Abiotic Stress Tolerance in Rice Are Inversely Modulated by an Abscisic Acid-Inducible Mitogen-Activated Protein Kinase.	Plant Cell	15(3)	745-759	2003	MSRMK2,PR10A	OsMSRMK2, OsMAPK5, OsMAP1, OsMPK3, OsBIMK1, OsMAPK2, MPK5, BIMK1, MAPK2, MAPK5, MPK3, OsMPK5, OsMAPK3, OsMAPK5b, MAPK3,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 
21970	7590339	Xu,H., Theerakulpisut,P., Goulding,N., Suphioglu,C., Singh,M.B. and Bhalla,P.L.	Cloning, expression and immunological characterization of Ory s 1, the major allergen of rice pollen.	Gene	164(2)	255-259	1995	EXPB1A	OsEXPB1, EXPB1a, OsaEXPb1.2, Ory s I, EXPB1.1, Ory s 1
21971	15255861	Xu,M., Hillwig,M.L., Prisic,S., Coates,R.M. and Peters,R.J.	Functional identification of rice syn-copalyl diphosphate synthase and its role in initiating biosynthesis of diterpenoid phytoalexin/allelopathic natural products.	Plant J.	39(3)	309-318	2004	CPS4	OsCPS4, CYC1, OsCYC1, OsCyc1, cpsl3, OsCPSL3, OsCPSsyn, OsCyc1/OsCPS4, OsTPS15, Os-CPS4, TPS11, OsTPS11
21972	8278510	Xu,Y. and Hall,T.C.	Cytosolic triosephosphate isomerase is a single gene in rice.	Plant Physiol.	101(2)	683-687	1993	TPI	tpi*, tips, TI, OsTPI1, TPI1, OsTPI1.1, OsTPI1.2 
21973	8108523	Xu,Y., Harris-Haller,L.W., McCollum,J.C., Hardin,S.H. and Hall,T.C.	Nuclear gene encoding cytosolic triosephosphate isomerase from rice (Oryza sativa L.).	Plant Physiol.	102(2)	697	1993	TPI	tpi*, tips, TI, OsTPI1, TPI1, OsTPI1.1, OsTPI1.2 
21974	7888615	Xu,Y., Buchholz,W.G., DeRose,R.T. and Hall,T.C.	Characterization of a rice gene family encoding root-specific proteins.	Plant Mol. Biol.	27(2)	237-248	1995	_,_	RCc3, OsHyPRP01, HyP/GRP01, OsHyPRP1, HyP/GRP1, OsRcc3, HyPRP1,RCc2, RCg2, OsHyPRP13, HyP/GRP13, HyPRP13, OsRCg2, OsHyPRP35, HyPRP35
21975	8605293	Xu,Y., Zhu,Q., Panbangred,W., Shirasu,K. and Lamb,C.	Regulation, expression and function of a new basic chitinase gene in rice (Oryza sativa L.).	Plant Mol. Biol.	30(3)	387-401	1996	CHT1	Cht1*(Chi1), Ch16, Cht1, CHT-1, CH16, RC24, OsChia1a, OsChia1, Chi1, Cht1*, Chi-1, Cht-1, Cht1, RCC1, OsCht-1, PR3, OsPR3
21976		Xue,Y., Tang,D., Zhang,Y. and Li,W.	Isolation of candidate R disease resistance genes from rice	Chin. Sci. Bull.	43	497-500	1998	_,_,_,_,_	Osh359-1,Osh359-3, Osh359-5,Os8558-3, Os8558-8,Os8558-12,Osh359-2
21977	1368338	Yamagata,H., Nomura,T., Arai,S., Tanaka,K. and Iwasaki,T.	Nucleotide sequence of a cDNA that encodes a rice prolamin.	Biosci. Biotechnol. Biochem.	56(3)	537	1992	PRO13B.2	Prol-21, pro13b.2, OsPRO13B.2, PROLM20
21978	11055401	Yamagata,H., Uesugi,M., Saka,K., Iwasaki,T. and Aizono,Y.	Molecular cloning and characterization of a cDNA and a gene for subtilisin-like serine proteases from rice (Oryza sativa L.) and Arabidopsis thaliana.	Biosci. Biotechnol. Biochem.	64(9)	1947-1957	2000	RSP1	OsRSP1, OsSub5, SUB5, OsSub6, SUB6
21979	12162569	Yamaguchi,T., Nakayama,K., Hayashi,T., Tanaka,Y. and Koike,S.	Molecular Cloning and Characterization of a Novel beta-1,3-glucanase Gene from Rice	Biosci. Biotechnol. Biochem.	66(6)	1403-1406	2002	G1	Osg1, g1
21980	14729915	Yamaguchi,T., Nagasawa,N., Kawasaki,S., Matsuoka,M., Nagato,Y. and Hirano,H.Y.	The YABBY Gene DROOPING LEAF Regulates Carpel Specification and Midrib Development in Oryza sativa.	Plant Cell	16(2)	500-509	2004	DL	OsDL, dl(lop), lop, dl, dl1, OsDRPq3, DRPq3
21981	15215597	Yamaguchi,T., Nakayama,K., Hayashi,T., Yazaki,J., Kishimoto,N., Kikuchi,S. and Koike,S.	cDNA Microarray Analysis of Rice Anther Genes under Chilling Stress at the Microsporogenesis Stage Revealed Two Genes with DNA Transposon Castaway in the 5'-Flanking Region.	Biosci. Biotechnol. Biochem.	68(6)	1315-1323	2004	OPR1,_,_,ACX2,P0C,GLN1;1,_,_,EF1G,APX1,_,_,_,OC1,_,_,RPS7,RPL18,VSR4,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,RPL7,SAMDC,_,MTI3A,ALDH11A3,RPL2,_,RPS4,_,XDH1,_,CIPK01,SK1,HMGRIII,LCD2,RPS8,OSH1,RCS3,SBP,PH1,BEL,RPL18A,HMGB710,RSUS2,_,_,_,CCC1,_,ACBP1,HXK7,FER2,SAP8,ATG8C,_,BETACA1,OPR4,GRX6,MS2,SALT,DOF4,AMY3D,_,LTI6B,AP37 ,KAT1,GER2,NAC6,RADC1	OsOPR1, OsOPR2, OsOPR11, OsOPR06-6, OPDAR1, OsOPR, OPDAR,OSINV2, OsINV2, OsVIN1, VIN1,SUI1,OsACX2,OsP0C,OsGLN1;1, GS1, RGS28, OsGS1;1, GS1;1, OsGS, GS1, OsGS1, GLN1-1, OsGS1-1, GS1-1, GS1.1, OsGS1.1,OsWD40-97,SAMDC1, SAMDC, OsSAMDC4,,OsAPX1, APXa, OsAPXa, OsAPx01, OsAPx1, OSAPX1, APx1, cAPX, APX2, cAPXa, OscAPXa,OsARP, OsCTP,OsRBX1b, RBX1b,  OsRING441, RING441,OsWD40-125,Oc1*, Oc1, OC-I, SPOC-I, OsCP1, Oc, OCI, OsCYS1, OsPR6b, PR6b,OsAP1,C10501,rps7,rpl18,OsVSR4,,,,,,NFR,,,,,,,,,,,,,,Ubi1,rpl7,SamDC, AdoMetDC, AdoMetDC1, OsSAMDC1,prx86, PRX86, OsPRX86,OsMT3a, MT3a, OsMT-I-3a, MT-I-3a, MTe, met2, OsMT3, MT3, OsMTI-3a, MTI-3a,OsALDH11A3, GAPN,rpl2, rpl8, RPL8, OsRPL2, OsRPL8,rig, RPS15, OsRPS15,rps4, RPS4a ,OsSAHH, SAHH,OsXDH1, OsSAC3, SAC3,,OsCIPK01, CIPK1, OsCIPK1, OsSnRK3.3, SnRK3.3,OsSK1,HMGR III, OsHMGRIII, Hmg3, HMGR3, HMGR 3, OsHMGR3, HMGR2, OsHMGR2, OsOMT,OsLCD2, OsCS1, CS1,rps8,OSKN1, Oskn1, OsKN1, OSH1/Oskn1, HB75,rcs3, OsRCS3, OsOASTL-A1, OASTL-A1,Os SBP, OsSBP,SCL1, OsSCL1, OsGRAS-3, OsGRAS3, GRAS-3, GRAS3, OsPH1,  ph1, CIGR, OsCIGR,bel, bel-a(8077S), bel-b(=bsl, Norin8m), CYP81A6, OsCYP81A6, OsCYP81Q32, CYP81Q32, OsCYP71U8, CYP71U8,rpl18a, RPL18a, OsRPL18a,OsHMGB710, OsNFD101, NFD101,sus2, RSus2(t), SUS2, SS1, OsScS1, RSs1, RSus2, OsSUS2, RSS1, RSus1, OsSusy2, Susy2, OsRSUS1, RSUS1,GOS2, OseIF1, OsGOS2, SUI1, PtfS ,,VLN2, OsVLN2, Os VLN2,Os CCC1, OsCCC1, OsLAT9 ,OsAAE3, AAE3, OsOCS, OCS, 4CL,OsACBP1,OsHXK7, OsHXK8,OsFER2, OsFer2,Osi-SAP8, OsiSAP8, OsSAP8, OsSAP1, SAP1,OsATG8c,WZF1, OsWZF1, DLN99, OsDLN99, OsZFP1, ZFP1,OsCA, CA, OsbetaCA1, betaCA1, CA1,OsOPR4, OsOPR10, OsOPR06-3, OsOPR7,OsGRX6, OsGrx_I1, Grx_I1,OsMS2, OsDPW, DPW, DPW1, OsDPW1, OsFAR2, FAR2,salT*(sal1), SalT1*, sal1, Sal1, SALT, ML, SalT, OsSalT, OsJRL, JRL, Osl43, OsL43, OsMBL1, MBL1, OsJRL01, JRL01, OsJRL1, JRL1,OsDof4, OsDof8, Dof8, OsDof-8, DOF8, OsDof10, Dof10,Amy3D/E*(RAmy3D/E), alpha Amy3, AmyII-4, AMY1.3, Amy3D, Amy3D/E*, RAmy3D/E, Amy3D_E, Amy8, aAmy3, RAmy3D, OsAmy3D, alphaAmy3, OsRamy3D,OsLTP1.17, b1, LTP2, OsLtpI.17,OsLti6b, Lti6b, OsLTI6B, OsRCI2-6,OsAP37,OsI57, I57, OsKAT1, OsACAA1, ACAA1,OsGLP8-3, GLP8-3, OsGER2, OsCDP8.3, CDP8.3,OsNAC6, ONAC048, NAC48, SNAC2, SNAC2/OsNAC6, OsNAC6/ONAC048, OsSNAC2, SNAC-2, OsSNAC-2, OsNAC2,OsAP25, Radc1, OsRADC1, AP25
21982	14733924	Yamamoto,T., Mori,Y., Ishibashi,T., Uchiyama,Y., Sakaguchi,N., Furukawa,T., Hashimoto,J., Kimura,S. and Sakaguchi,K.	Characterization of Rad6 from a higher plant, rice (Oryza sativa L.) and its interaction with Sgt1, a subunit of the SCF ubiquitin ligase complex.	Biochem. Biophys. Res. Commun.	314(2)	434-439	2004	SGT1,_	OsSgt1, OsSGT1, Os SGT1,Rad6, OsRad6, Dhr6, OsUBC9, UBC9
21983	12032317	Yamanouchi,U., Yano,M., Lin,H., Ashikari,M. and Yamada,K.	A rice spotted leaf gene, Spl7, encodes a heat stress transcription factor protein.	Proc. Natl. Acad. Sci. U.S.A.	99(11)	7530-7535	2002	SPL7	spl7, HSFA4D, HSF10, HSF15, OsHSF15, SP17, OsHsf-15, rHsf10, OsHsfA4d, HSfA4d, lrd13, HSF1
21984	10517861	Yan,B., Ma,Z.G., Song,L.R., Wang,L.X., Zhao,Y.C. and Huang,X.Q.	Sequence of a resistance gene homologue from Oryza officinals wall (Acc. No. AJ246006). (PGR99-152)	Plant Physiol.	121(2)	686	1999		
21985	12471446	Yan,L., Echenique,V., Busso,C., SanMiguel,P., Ramakrishna,W., Bennetzen,J.L., Harrington,S. and Dubcovsky,J.	Cereal genes similar to Snf2 define a new subfamily that includes human and mouse genes.	Molecular Genetics & Genomics (Molecular General Genetics up to 2001)	268(4)	488-499	2002	CHR711	Snf2P, OsSnf2P, OsCHR711
21986		Yanagawa,Y., Ueda,T., Yamamoto,K., Sasaki,T., Tanaka,K., Hashimoto,J., Sato,T. and Nakagawa,H.	Cloning and sequencing of cDNA from Oryza sativa encoding a homolog to non-ATPase subunit, MBP1, of 26S proteasome in Arabidopsis thaliana	Plant Biotechnol.	15(3)	147-150	1998	S5A	OsS5a, S5a, OsRpn10, Rpn10, OsvWA9, vWA9
21987	11572990	Yang,D., Wu,L., Hwang,Y.S., Chen,L. and Huang,N.	Expression of the REB transcriptional activator in rice grains improves the yield of recombinant proteins whose genes are controlled by a Reb-responsive promoter.	Proc. Natl. Acad. Sci. U.S.A.	98(20)	11438-11443	2001	REB	OsZIP33, RISBZ2, OsbZIP33
21988	15061077	Yang,G. and Komatsu,S.	Molecular cloning and characterization of a novel brassinolide enhanced gene OsBLE1 in Oryza sativa seedlings.	Plant Physiol. Biochem.	42(1)	1-6	2004	_	OsBLE1 
21989	11713671	Yang,G., Dong,J., Chandrasekharan,M.B. and Hall,T.C.	Kiddo, a new transposable element family closely associated with rice genes.	Molecular Genetics & Genomics (Molecular General Genetics up to 2001)	266(3)	417-424	2001	KIDDO,RUBQ2	Kiddo,rubq2, rub1, Ubq1, Rubq1, UBQ10 
21990	13677471	Yang,G., Matsuoka,M., Iwasaki,Y. and Komatsu,S.	A novel brassinolide-enhanced gene identified by cDNA microarray is involved in the growth of rice.	Plant Mol. Biol.	52(4)	843-854	2003	BLE2	OsBLE2
21991		Yang,G., Shen,S., Yang,S. and Komatsu,S.	OsCDPK13, a calcium-dependent protein kinase gene from rice, is induced in response to cold and gibberellin	Plant Physiol. Biochem.	41(4)	369-374	2003	CDPK7	OsCDPK7, OsCPK7, CDPK1, OsCDPK11, CDPK12, OsCDPK13
21992	15805485	Yang,G., Lee,Y.H., Jiang,Y., Shi,X., Kertbundit,S. and Hall,T.C.	A Two-Edged Role for the Transposable Element Kiddo in the rice ubiquitin2 Promoter	Plant Cell	17(5)	1559-1568	2005	KIDDO,MDM1,RUBQ2	Kiddo,MDM1,rubq2, rub1, Ubq1, Rubq1, UBQ10 
21993	10557360	Yang,H., Matsubayashi,Y., Nakamura,K. and Sakagami,Y.	Oryza sativa PSK gene encodes a precursor of phytosulfokine-alpha, a sulfated peptide growth factor found in plants.	Proc. Natl. Acad. Sci. U.S.A.	96(23)	13560-13565	1999	PSK	OsPSK, PSK-alpha, PSK-beta
21994	11198424	Yang,H., Matsubayashi,Y., Hanai,H., Nakamura,K. and Sakagami,Y.	Molecular cloning and characterization of OsPSK, a gene encoding a precursor for phytosulfokine-alpha, required for rice cell proliferation.	Plant Mol. Biol.	44(5)	635-647	2000	PSK	OsPSK, PSK-alpha, PSK-beta
21995	12369615	Yang,H.J., Shen,H., Chen,L., Xing,Y.Y., Wang,Z.Y., Zhang,J.L. and Hong,M.M.	The OsEBP-89 gene of rice encodes a putative EREBP transcription factor and is temporally expressed in developing endosperm and intercalary meristem.	Plant Mol. Biol.	50(3)	379-391	2002	EBP-89	OsEBP-89, ebp-89, OsERF#060, OsERF060, OsERF60, ERF60, AP2/EREBP#027, AP2/EREBP27, OsEBP89, DLN76, OsDLN76
21996	12091716	Yang,J.Y., Chung,M.C., Tu,C.Y. and Leu,W.M.	OSTF1: A HD-GL2 Family Homeobox Gene is Developmentally Regulated During Early Embryogenesis in Rice.	Plant Cell Physiol.	43(6)	628-638	2002	TF1	OSTF1(t), OsTF1, OsHDZ3, OsHDZIP3, HDZ3, HDZIP3
21998	8260630	Yano,A., Shimazaki,T., Kato,A., Umeda,M. and Uchimiya,H.	Molecular cloning and nucleotide sequence cDNA encoding nucleoside diphosphate kinase of rice (Oryza sativa L.).	Plant Mol. Biol.	23(5)	1087-1090	1993	NDPK1	OsNDPK1, NDK, rNDK, NDK1, NDKR, NDK-1
21999	11148291	Yano,M., Katayose,Y., Ashikari,M., Yamanouchi,U., Monna,L., Fuse,T., Baba,T., Yamamoto,K., Umehara,Y., Nagamura,Y. and Sasaki,T.	Hd1, a major photoperiod sensitivity quantitative trait locus in rice, is closely related to the Arabidopsis flowering time gene CONSTANS.	Plant Cell	12(12)	2473-2483	2000	SE1	Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, OsHd1,  Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21
22001		Yau,C.P., Zhuang,C.X. and Zee,S.Y.	Isolation of a Full Length cDNA Encoding a CER1 Homolog in Rice (Accession No. AF143746). (PGR99-104)	Plant Physiol.	120(3)	935	1999	_	OS-CER1, CER1
22002		Yau,C.P., Zhuang,C.X. and Zee,S.Y.	Molecular Cloning of a Full Length cDNA Encoding Aldehyde Dehydrogenase-Like Protein in Rice (Accession No : AF148877). (PGR99-112)	Plant Physiol.	120(4)	1206	1999	ALDH3E1	OS-ALDH, OsALDH3E1
22003	14754915	Yau,C.P., Wang,L., Yu,M., Zee,S.Y. and Yip,W.K.	Differential expression of three genes encoding an ethylene receptor in rice during development, and in response to indole-3-acetic acid and silver ions.	J. Exp. Bot.	55(397)	547-556	2004	ETR3,ERS2,ERS1,ETR2,ETR4	OsETR3, OsERS4, OS-ETR3, OsETR3a, OsETR3b, PK2, OsPK2, OsETR2;1, ETR2;1,OS-ERS2, OsERS2, OsERS2a, OsERS2b, OsERS2c,OS-ERS1, OsERS1, OsERS1a, OsERS1b, OSERS,etr2, OsPK1, PK1, ERL1, OsETR2, OsERL1, OS-ETR2, OsERS3,PK3, OsPK3, OsETR4, OS-ETR4
22004	15078336	Ye,R., Yao,Q.H., Xu,Z.H. and Xue,H.W.	Development of an efficient method for the isolation of factors involved in gene transcription during rice embryo development.	Plant J.	38(2)	348-357	2004	EIL1,_,NAC91,NBR1,_,_,_,_,_,_,ERF72,_,_,_,_,_,_,_,_,WRKY37,C3H50,ERF68,CBSCBS4,ERF61,GRF6,2R_MYB23,HSFA9,XB15,GRF5,WRI1-1,MYB19 ,GS2,_,_,HOX5	OsEIL1, EIN3, OsEIN3, MHZ6, OsEIL1a, EIL1a, OsEIL1b, EIL1b,,ONAC091, ONAC91, OsSOG1, SOG1,OsNBR1,,,,,,,OsEREBP, OsERF#072, OsERF072, OsERF72, AP2/EREBP#064, AP2/EREBP64, BIERF1, OsBIERF1, OsEBP2,,,OsFbox304, Os_F0494,  OsFBX192, FBX192,,,,,OsbHLH090,OsWRKY37,OsC3H50, OsTZF6, OsCCCH-Zn-6, DLN188, OsDLN188,OsERF#068, OsERF068, OsERF68, AP2/EREBP#003, AP2/EREBP3, ERF2,OsCBSCBS4, OsCBSCBS4a, OsCBSCBS4b, OsCBSCBS4c, OsCBSCBS4d, OsCBSCBS4e, CBSCBSCBD2, OsCBSCBSCBD2,OsERF#061, OsERF061, OsERF61, AP2/EREBP#093, AP2/EREBP93,OsGRF6,Os2R_MYB23,HSfA9, OsHsfA9, OsHsf-09, rHsf8, HSF09, OsHSF9, HSF9, HSF8, OsHsfA8, HsfA8 ,XB15, OsPP2C35, PP2C35, OsPP59, SIP35 ,OsGRF5,AP2/EREBP131, AP2/EREBP#131, OsWRI1-1, OsWRI1a, WRI1a,R2R3-MYB, OsMYB19, Os2R_MYB16, 2R_MYB16 ,OsGRF4, GRF4, GS2/OsGRF4, PT2, GLW2, GS2/GL2, LGS1, OsLGS1,Ose705,PAKRP1, OsKRP1, SIP18 ,Oshox5, OsHox5, EIP9, OsHDZ25, OsHDZIP25, HDZ25, HDZIP25,  OsHDZ26, OsHDZIP26, HDZ26, HDZIP26
22005	16006597	Yi,K., Wu,Z., Zhou,J., Du,L., Guo,L., Wu,Y. and Wu,P.	OsPTF1, A Novel Transcription Factor Involved in Tolerance to Phosphate Starvation in Rice.	Plant Physiol.	138(4)	2087-2096	2005	PTF1	OsPTF1, OsbHLH096, bHLH96
22006	9311985	Yin,Y., Zhu,Q., Dai,S., Lamb,C. and Beachy,R.N.	RF2a, a bZIP transcriptional activator of the phloem-specific rice tungro bacilliform virus promoter, functions in vascular development.	EMBO J.	16(17)	5247-5259	1997	RF2A	RF2a, OsbZIP75
22007	9491803	Yokoi,M., Ito,M., Izumi,M., Miyazawa,H., Nakai,H. and Hanaoka,F.	Molecular cloning of the cDNA for the catalytic subunit of plant DNA polymerase alpha and its cell-cycle dependent expression.	Genes Cells	2(11)	695-709	1997	POLA	OSPOLA, Ospolalpha, OsDNAP, DNAP
22008	8589938	Yoshiba,Y., Yamaguchi-Shinozaki,K., Shinozaki,K. and Harada,Y.	Characterization of a cDNA clone encoding 23 kDa polypeptide of the oxygen-evolving complex of photosystem II in rice.	Plant Cell Physiol.	36(8)	1677-1682	1995	_	
22009	9880347	Yoshida,K.T., Wada,T., Koyama,H., Mizobuchi-Fukuoka,R. and Naito,S.	Temporal and spatial patterns of accumulation of the transcript of Myo-inositol-1-phosphate synthase and phytin-containing particles during seed development in rice.	Plant Physiol.	119(1)	65-72	1999	INO1	OsINO1, MIPS, IPS, RINO1, OsINO1-1, OsRINO1, OsMIPS1, MIPS1
22010	11975732	Yoshida,K.T., Fujiwara,T. and Naito,S.	The synergistic effects of sugar and abscisic acid on myo-inositol-1-phosphate synthase expression.	Physiol. Plantarum	114(4)	581-587	2002	INO1	OsINO1, MIPS, IPS, RINO1, OsINO1-1, OsRINO1, OsMIPS1, MIPS1
22011	14634157	Yoshikawa,M., Yang,G., Kawaguchi,K. and Komatsu,S.	Expression Analyses of beta-tubulin Isotype Genes in Rice.	Plant Cell Physiol.	44(11)	1202-1207	2003	TUB6,TUB2,TUB7,TUB5,TUB8,TUB1,TUB3,TUB4	OsTUB6, TUBB6,OsTUB2, TUBB2,OsTUB7, TUBB7, pTUB22,OsTUB5, TUBB5, OSTB-50, R2242,OsTUB8, TUBB8,OsTUB1, TUBB1, OSTB-34,OsTUB3, TUBB3, RTUB-2,OsTUB4, TUBB4, OSTB-16, R1623, RTUB-1, Ostub16
22012	9465073	Yoshimura,S., Yamanouchi,U., Katayose,Y., Toki,S., Wang,Z.X., Kono,I., Kurata,N., Yano,M., Iwata,N. and Sasaki,T.	Expression of Xa1, a bacterial blight-resistance gene in rice, is induced by bacterial inoculation.	Proc. Natl. Acad. Sci. U.S.A.	95(4)	1663-1668	1998	XA1	Xa1(Xe), Xe, Xa1, Xa-1
22013	8455556	Youssefian,S., Nakamura,M. and Sano,H.	Molecular characterization of rgp2, a gene encoding a small GTP-binding protein from rice.	Mol. Gen. Genet.	237(1-2)	187-192	1993	RGP1,RGP2	rgp1, OsRab11E2,rgp2, OsRab11B1
22014	10811811	Yu,E.Y., Kim,S.E., Kim,J.H., Ko,J.H., Cho,M.H. and Chung,I.K.	Sequence-specific DNA recognition by the Myb-like domain of plant telomeric protein RTBP1.	J. Biol. Chem.	275(31)	24208-24214	2000	RTBP1	rtbp1, TBP1, OsTBP1
22015	11233258	Yu,F.T., Zhang,A.M., Chen,S.Y. and Zhang,F.S.	Differential accumulation of the new high-affinity phosphate transporter candidated gene fragment in rice roots in response to phosphorus deficiency stress	Acta Genetica Sinica	28(2)	144-151	2001	PT3	OsPT3, PHT1-3, OsPht1;3, OjPT1, PHT1;3
22016	9461411	Yu,L.H., Umeda,M., Liu,J.Y., Zhao,N.M. and Uchimiya,H.	A novel MT gene of rice plants is strongly expressed in the node portion of the stem.	Gene	206(1)	29-35	1998	MTI2B	OsMT2c, OsMT-I-2b, MT2c, MT-I-2b, MTc, met5, ricMT, OsMT2
22018	11247601	Yu,S., Lei,H., Chang,W., Soll,D. and Hong,G.	Protein phosphatase 2A: identification in Oryza sativa of the gene encoding the regulatory A subunit.	Plant Mol. Biol.	45(1)	107-112	2001	PP2A-A	PP2A-A, RPA1
22019	1531032	Yu,W.P., Wang,A.Y., Juang,R.H., Sung,H.Y. and Su,J.C.	Isolation and sequences of rice sucrose synthase cDNA and genomic DNA.	Plant Mol. Biol.	18(1)	139-142	1992	RSUS1	sus1, RSus1(t), SUS1, SS2, OsScS2, RSs2, RSus1, SuSy1, OsSUS1, RSS2, RSus2, OsRSUS1
22020	12207219	Yuan,Q., Hill,J., Hsiao,J., Moffat,K., Ouyang,S., Cheng,Z., Jiang,J. and Buell,C.R.	Genome sequencing of a 239-kb region of rice chromosome 10L reveals a high frequency of gene duplication and a large chloroplast DNA insertion.	Molecular Genetics & Genomics (Molecular General Genetics up to 2001)	267(6)	713-720	2002	GSTU23,GSTU24,GSTU28,_,_,_,GSTU26,GSTU14,GSTU9,GSTU3,_,GSTU20,_,_,_,_,_,_,_,_,_,_,_,_,GSTU2,GSTU18,GSTU25,GSTU27,_,GSTU22,GSTU8,GSTU4,GSTU13,GSTU30,GSTU19,GSTU15,GSTU12	OsGSTU23,OsGSTU24,OsGSTU28,GST,GST.p,GST.p,OsGSTU26,OsGSTU14,OsGSTU9,OsGSTU3, OsGSTU29, GSTU29,GST,OsGSTU20,rpoC2,atpF,RPS2,atpH,rps14,,psaA,rps4,ndhJ,atpA,ndhC,,OsGSTU2, ParC,OsGSTU18, OsGSTU7, GSTU7,OsGSTU25,OsGSTU27,atpI,OsGSTU22,OsGSTU8, OsGST35, GST35,OsGSTU4, GST4,OsGSTU13,OsGSTU30,OsGSTU19, GSTU6, OsGSTU6, OsGSTU6.1, GSTU6.1,OsGSTU15,OsGSTU12, OsGSTU6.2, GSTU6.2
22021		Yuan,Z., Qian,X., Liu,J., Liu,J., Qian,M., Yang,J. and Liu,J.	Cloning and characterization of two cDNAs encoding rice MADS box protein	Prog. Nat. Sci.	10	357-363	2000	MADS2,COG1	OsMADS2, RMADS219, NMADS1, PI2, nmads1, DLN33, OsDLN33,OsMADS17, MADS17, NMADS3, RMADS213, nmads3
22022	8389618	Zarembinski,T.I. and Theologis,A.	Anaerobiosis and plant growth hormones induce two genes encoding 1-aminocyclopropane-1-carboxylate synthase in rice (Oryza sativa L.).	Mol. Biol. Cell	4(4)	363-373	1993	ACS2,ACS4,ACS3,ACS1,ACS5	OsACS2, Os-ACS2,OsACS4, OS-ACS4,ACC3*, ACC3, OsACS3, OS-ACS3, OsACC3,ACC1*, OsACS1, Os-ACS1, ACC1, OsACC1,OsACS5, OS-ACS5, OsBphi008a
22023	15377756	Zeng,L.R., Qu,S., Bordeos,A., Yang,C., Baraoidan,M., Yan,H., Xie,Q., Nahm,B.H., Leung,H. and Wang,G.L.	Spotted leaf11, a Negative Regulator of Plant Cell Death and Defense, Encodes a U-Box/Armadillo Repeat Protein Endowed with E3 Ubiquitin Ligase Activity.	Plant Cell	16(10)	2795-2808	2004	SPL11	spl11, spl11*, OsPUB11, PUB11,  OsPUB11/SPL11, PUB11/SPL11
22024		Zhang,J.-S., Xie,C., Li,Z.-Y. and Chen,S.Y.	Expression of plasma membrane H+ -ATPase gene in response to salt stress in a rice salt-tolerant mutant and its original variety	Theor. Appl. Genet.	99(6)	1006-1011	1999	AHA3	OSA3, OsA3, osAHA3, AHA3, PAM3
22025	12160464	Zhang,L., Liu,B.-F., Liang,S., Jones,R.L. and Lu,Y.-T.	Molecular and biochemical characterization of a calcium/calmodulin-binding protein kinase from rice.	Biochem. J.	368(Pt 1)	145-157	2002	CRK1	OsCRK1, OsCBK, CBK
22027	14730075	Zhang,M.Y., Bourbouloux,A., Cagnac,O., Srikanth,C.V., Rentsch,D., Bachhawat,A.K. and Delrot,S.	A Novel Family of Transporters Mediating the Transport of Glutathione Derivatives in Plants.	Plant Physiol.	134(1)	482-491	2004	_	OsOPT3, OsGT1
22029	16255173	Zhang,T., Wang,Q., Chen,X., Tian,C., Wang,X., Xing,T., Li,Y. and Wang,Y.	Cloning and biochemical properties of CDPK gene OsCDPK14 from rice	J. Plant Physiol.	162(10)	1149-1159	2005	CDPK24	OsCDPK24, OsCPK24, OsCDPK14, CPK24
22030	1347144	Zhao,X. and Kochert,G.	Characterization and genetic mapping of a short, highly repeated, interspersed DNA sequence from rice (Oryza sativa L.).	Mol. Gen. Genet.	231(3)	353-359	1992		
22031	2235510	Zhao,Y., Kung,S.D. and Dube,S.K.	Nucleotide sequence of rice 4-coumarate:CoA ligase gene, 4-CL.1.	Nucleic Acids Res.	18(20)	6144	1990	4CL1	Os4CL1, 4-CL, 4-CL. 1
22032	8142020	Zhou,X.J. and Fan,Y.L.	5'-flanking region responsible for endosperm-specific expression of rice prolamine chimeric gene in transgenic tobacco.	Sci. China, Ser. B, Chem. Life Sci. Earth Sci.	36(11)	1307-1314	1993	PRO13B.14	PG5b, Prol-08, pro13b.14, OsPRO13B.14
22033	8877110	Zhou,Z., Zhu,Z., Chen,R., Liu,C. and Li,X.	High level expression of oryzacystatin in Escherichia coli.	Chin. J. Biotechnol.	12(1)	17-24	1996	OC1	Oc1*, Oc1, OC-I, SPOC-I, OsCP1, Oc, OCI, OsCYS1, OsPR6b, PR6b
22035	15948847	Zhu,Q. and Ge,S.	Phylogenetic relationships among A-genome species of the genus Oryza revealed by intron sequences of four nuclear genes.	New Phytol.	167(1)	249-265	2005	ADH1	Adh1, Adh1/2, adh1/adh2, OsADH1
22036	8534851	Zhu,Q., Dabi,T., Beeche,A., Yamamoto,R., Lawton,M.A. and Lamb,C.	Cloning and properties of a rice gene encoding phenylalanine ammonia-lyase.	Plant Mol. Biol.	29(3)	535-550	1995	PAL1	OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6
22037	11971135	Zhu,Q., Ordiz,M.I., Dabi,T., Beachy,R.N. and Lamb,C.	Rice TATA Binding Protein Interacts Functionally with Transcription Factor IIB and the RF2a bZIP Transcriptional Activator in an Enhanced Plant in Vitro Transcription System.	Plant Cell	14(4)	795-803	2002	_,PAL1,TBP2	OsTFIIB,OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6,OsTBP2
22039	16299167	Zhu,S., Gao,F., Cao,X., Chen,M., Ye,G., Wei,C. and Li,Y.	The Rice Dwarf Virus P2 Protein Interacts with ent-Kaurene Oxidases in Vivo, Leading to Reduced Biosynthesis of Gibberellins and Rice Dwarf Symptoms.	Plant Physiol.	139(4)	1935-1945	2005	KO5,KO1,D35,KO4	OsKO5, OSKOL5, KOS2, OsKOS2, CYP701A9, OsCYP701A9, OsKO1, KO1,OsKO1, OSKO1, OSKOL1, OsKOS4, CYP701A7,d35, d35(t), dwf30, OsKOL2, KOL2, KO2, OsKO2, OSKO2, KO, CYP701A, CYP701A6, Os KO2, OsKOL2/CYP701A,OsKO4, OsKOL4, KOS1, CYP701A8, OsCYP701A8, OsKO2, CYP701A8/OsKOL4
22040	12947109	Zhu,Y., Cai,X.L., Wang,Z.Y. and Hong,M.M.	An interaction between a MYC protein and an EREBP protein is involved in transcriptional regulation of the rice Wx gene.	J. Biol. Chem.	278(48)	47803-47811	2003	WX1,EBP-89,BP-5	wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx,OsEBP-89, ebp-89, OsERF#060, OsERF060, OsERF60, ERF60, AP2/EREBP#027, AP2/EREBP27, OsEBP89, DLN76, OsDLN76,OsBP-5, OsBP5, BP5
22042	10447467	Zhuang,C.X., Yau,C.P. and Zee,S.Y.	The Electronic Plant Gene Register.	Plant Physiol.	120(2)	633-635	1999	DFR2 	OsTKPR1, TKPR1, OsDFR2, OS-DFR2, OsDFR2A, DFR2A, OsCCRL1, CCRL1
22044	16109971	Rice Chromosome 3 Sequencing Consortium	Sequence, annotation, and analysis of synteny between rice chromosome 3 and diverged grass species.	Genome Res.	15(9)	1284-1291	2005		
22047	16120687	Abiko,T., Obara,M., Ushioda,A., Hayakawa,T., Hodges,M. and Yamaya,T.	Localization of NAD-isocitrate dehydrogenase and glutamate dehydrogenase in rice roots: candidates for providing carbon skeletons to NADH-glutamate synthase.	Plant Cell Physiol.	46(10)	1724-1734	2005	GDH1,GDH3,IDHC,GDH2,IDHA	OsGDH1,OsGDH3,OsIDHc;2, IDHc;2,OsGDH2,OsIDHa, ICDHc
22051		Akiyama,T. and Pillai,M.A.	Molecular cloning, characterization and in vitro expression of a novel endo-1,3-beta-glucanase up-regulated by ABA and drought stress in rice (Oryza sativa L.)	Plant Sci.	161(6)	1089-1098	2001	GLN1	OsGLN1
22055		Aoki,H., Kumada,H.O., Masumura,T., Tanaka,K. and Ida,S.	Cloning and nucleotide sequence of a cDNA encoding rice embryo ferredoxin-NADP+ oxidoreductase	Plant Physiol.	112	1399	1996	_	
22058		Binmei,L., Jiping,T., Jinde,W., Zengliang,Y., Ying,Z., Leya,Z., Dehong,S., Can,C., Mei,S. and Yuejin,W.	Moleculer Biological Identification of Rice(Japonica) Dominant Semi-dwarf Mutatant	Mol. Plant Breed.(Chinese)	2(3)	326-330	2004		
22062		Che,F.S., Entani,T., Marumoto,T., Taniguchi,M., Takayama,S. and Isogai,A.	Identification of novel genes differentially expressed in compatible and incompatible interactions between rice and Pseudomonas avenae	Plant Sci.	162(3)	449-458	2002	_,IAI2,IAI1	CAI1,OsIAI2,OsIAI1, OsECT1, ECT1
22066		Chen,P.W. and Chen,L.J.	A rice embryo-specific cDNA (Accession No. U57641) encoding a late embryogenesis abundant group 3 protein (PGR96-049)	Plant Physiol.	111	1353	1996		
22068		Chen,X.H., Liu,Q.Q., Wu,H.K., Wang,Z.Y. and Gu,M.H.	cDNA Cloning and Sequence Analysis of Rice Sbe1 and Sbe3 Genes	Zhongguo Shuidao Kexue	17	109-112	2003	SBE3,SBE1	SBEIII*, SBEIII, Sbe3, RBE3, QEIIa, QEIIA, BEIIb, BEIIB, SBEIIb, OsBEIIb, sbe3, SBE III, OsSBEIIb, SBEIIb,sbe1, Rbe1. Sbe1, sbe1*(QEI), RBE1, BEI, SBE I, QEI, OsBEI, BE1, OsSBE1, OsSBEI, SBEI
22070	15759120	Cho,J.I., Lee,S.K., Ko,S., Kim,H.K., Jun,S.H., Lee,Y.H., Bhoo,S.H., Lee,K.W., An,G., Hahn,T.R. and Jeon,J.S.	Molecular cloning and expression analysis of the cell-wall invertase gene family in rice (Oryza sativa L.).	Plant Cell Rep.	24(4)	225-236	2005	CIN6,CIN5,INV1,CIN3,CIN8.P,CIN7,GIF1,CIN1	OsCIN5, CIN5, OsCIN6,OsCIN4, OsCIN5, CIN4, CWIN4, OsCWIN4,OSINV1, OsINV1, OsCIN7, OsCIN8,OSINV4, OsINV4, INV4, OsCIN3,OsCIN8, OsCIN8.P, CIN8,OsCIN6, OsCIN7, CIN6, CWIN6, OsCWIN6 ,gif1, CIN2, OsCIN2, OsGIF1, WB1, OsWB1, GIF1/OsCIN2,OSCIN1, OsCIN1
22071	16552590	Cho,J.I., Ryoo,N., Ko,S., Lee,S.K., Lee,J., Jung,K.H., Lee,Y.H., Bhoo,S.H., Winderickx,J., An,G., Hahn,T.R. and Jeon,J.S.	Structure, expression, and functional analysis of the hexokinase gene family in rice (Oryza sativa L.).	Planta.	224(3)	598-611	2006	HXK6,HXK4,HXK8,HXK3,HXK10,HXK9,HXK2,HXK1,HXK5,HXK7	OsHXK6,OsHXK4,OsHXK8,OsHXK3,OsHXK10,OsHXK9,OsHXK2,OsHXK1,OsHXK5,OsHXK7, OsHXK8
22072	16192280	Choi,M.S., Kim,M.C., Yoo,J.H., Moon,B.C., Koo,S.C., Park,B.O., Lee,J.H., Koo,Y.D., Han,H.J., Lee,S.Y., Chung,W.S., Lim,C.O. and Cho,M.J.	Isolation of a Calmodulin-binding Transcription Factor from Rice (Oryza sativa L.).	J. Biol. Chem.	280(49)	40820-40831	2005	CAMTA3,CAMTAPL,CAMTA6,CAMTA,CBT,SCT1,CAMTA4	OsCAMTA3, SCT2, OsSCT2, OsCAMTA2, CAMTA2,OsCAMTAPL,OsCAMTA6, OsCAMTA3, CAMTA3,OsCAMTA, qSCT1, OsCAMTA4, CAMTA4,OsCBT, DLN185, OsDLN185, OsCAMTA5, CAMTA5,OsSCT1, OsCAMTA1, CAMTA1,OsCAMTA4, OsCAMTA6, CAMTA6
22074	16648463	Chu,Z., Yuan,M., Yao,J., Ge,X., Yuan,B., Xu,C., Li,X., Fu,B., Li,Z., Bennetzen,J.L., Zhang,Q. and Wang,S.	Promoter mutations of an essential gene for pollen development result in disease resistance in rice.	Genes Dev.	20(10)	1250-1255	2006	XA13	xa13, Xa13, Os8N3, Os-8N3, 8N3, OsSWEET11, SWEET11, OsSWEET11/Xa13, Xa13/Os8N3/SWEET11, Os8N3/Xa13, OsSWEET11/Os8N3, OsSWEET11a, SWEET11a
22075		Chung,Y.-Y., Kim,S.-R., Kang,H.-G., Noh,Y.-S., Park,M.C. and An,G.	Characterization of two rice MADS box genes homologous to GLOBOSA	Plant Sci.	109	45-56	1995	MADS4,MADS2	OsMADS4, PI1, DLN140, OsDLN140,OsMADS2, RMADS219, NMADS1, PI2, nmads1, DLN33, OsDLN33
22078		Cooper,B., Hutchison,D., Park,S., Guimil,S., Luginbuhl,P., Goff,S. and Glazebrook,J.	Identification of rice proteins linked to the cyclin mediated regulation of the cell cycle	Plant Mol. Biol.			2003		
22081		Doyama,N., Kajiwara,H. and Ida,S.	Cloning and expression of a ferredoxin gene in rice roots in response to nitrate and ammonium	Plant Sci.	137(1)	53-62	1998	_	Fd, OsFd4, Fd4
22082	16753815	Du,X., Qian,X., Wang,D. and Yang,J.	Alternative splicing and expression analysis of OsFCA (FCA in Oryza sativa L.), a gene homologous to FCA in Arabidopsis.	DNA Seq.	17(1)	31-40	2006	FCA	OsFCA, OsFCA-1, OsFCA-2, OsFCA-3, OsFCA-4, OsFCA-gamma
22083	16827922	Duan,K., Li,L., Hu,P., Xu,S.P., Xu,Z.H. and Xue,H.W.	A brassinolide-suppressed rice MADS-box transcription factor, OsMDP1, has a negative regulatory role in BR signaling.	Plant J.	47(4)	519-531	2006	XTH2,HBD2,MADS47,XTH9	OsXTH2, XTR1, OsXTR1,OsCKI1, CKI, hbd2, CKI1, LTG1, OsCKI1/LTRPK1, LTRPK1, OsLTRPK1, LSES1, OsLSES1,OsMADS47, OsMDP1, MDP, MDP1,OsXTH9, OsXET9, XTH1, OsXTH1
22084	16453132	Fan,C., Xing,Y., Mao,H., Lu,T., Han,B., Xu,C., Li,X. and Zhang,Q.	GS3, a major QTL for grain length and weight and minor QTL for grain width and thickness in rice, encodes a putative transmembrane protein.	Theor. Appl. Genet.	112(6)	1164-1171	2006	LK3	lk3(t), lk3(t)*, SG3, GS3, SG3-GS3, OsGW3, OsGS3, RGG3/GS3/Mi/OsGGC1, RGG3, Mi, OsGGC1, GGC1, OsSYL3, SYL3, TT2, OsTT2
22086	16733757	Fujisawa,M., Yamagata,H., Kamiya,K., Nakamura,M., Saji,S., Kanamori,H., Wu,J., Matsumoto,T. and Sasaki,T.	Sequence comparison of distal and proximal ribosomal DNA arrays in rice (Oryza sativa L.) chromosome 9S and analysis of their flanking regions.	Theor. Appl. Genet.	113(3)	419-428	2006	25S rRNA,18S rRNA,5.8S rRNA	25S rRNA,18S rRNA,5.8S rRNA
22087	16762031	Fukayama,H., Tamai,T., Taniguchi,Y., Sullivan,S., Miyao,M. and Nimmo,H.G.	Characterization and functional analysis of phosphoenolpyruvate carboxylase kinase genes in rice.	Plant J.	47(2)	258-268	2006	PPCK3,PPCK2,PPCK1	OsPPCK3,OsPPCK2, OsPPCK2L, OsPPCK2S,OsPPCK1
22090	16905871	Furukawa,T., Sakaguchi,N. and Shimada,H.	Two OsGASR genes, rice GAST homologue genes that are abundant in proliferating tissues, show different expression patterns in developing panicles.	Genes Genet. Syst.	81(3)	171-180	2006	_,_	OsGASR2, GASR2,OsGASR1, GASR1
22093	11935018	Goff,S.A., Ricke,D., Lan,T.H., Presting,G., Wang,R., Dunn,M., Glazebrook,J., Sessions,A., Oeller,P., Varma,H., Hadley,D., Hutchison,D., Martin,C., Katagiri,F., Lange,B.M., Moughamer,T., Xia,Y., Budworth,P., Zhong,J., Miguel,T., Paszkowski,U., Zhang,S., Colbert,M., Sun,W.L., Chen,L., Cooper,B., Park,S., Wood,T.C., Mao,L., Quail,P., Wing,R., Dean,R., Yu,Y., Zharkikh,A., Shen,R., Sahasrabudhe,S., Thomas,A., Cannings,R., Gutin,A., Pruss,D., Reid,J., Tavtigian,S., Mitchell,J., Eldredge,G., Scholl,T., Miller,R.M., Bhatnagar,S., Adey,N., Rubano,T., Tusneem,N., Robinson,R., Feldhaus,J., Macalma,T., Oliphant,A. and Briggs,S.	A draft sequence of the rice genome (Oryza sativa L. ssp. japonica).	Science	296(5565)	92-100	2002		
22095		Gu,Z., Wang,J., Huang,J. and Zhang,H.	Cloning and characterization of a novel rice gene family encoding putative dual-specificity protein kinases, involved in plant responses to abiotic and biotic stresses	Plant Sci.	169(3)	470-477	2005	_,_,_,_	OsDPK1, DPK1, MKKK32, OsMKKK32, MAPKKK32,OsDPK4,OsDPK3,OsDPK2, stk
22096		Guo,Y.L. and Ge,S.	Molecular phylogeny of Oryzeae (Poaceae) based on DNA sequences from chloroplast, mitochondrial, and nuclear genomes	Am. J. Bot.	92(9)	1548-1558	2005	D1,_,_,ADH2,NAD1	d1, GPA1, GA1, OsGA1, RGA1, dwf1, XA7, RGA, D1/RGA1, D89, TGW5, OsTGW5, SRG5, OsSRG5,trnL(AAC), trnL,matK, ORF542 ,Adh2*, Adh2, OsADH2,nad1, Osnad1, nadI, nadIB
22097	11459218	Ha,S.H., Lee,S.W., Kim,Y.M. and Hwang,Y.S.	Molecular characterization of Hmg2 gene encoding a 3-hydroxy-methylglutaryl-CoA reductase in rice.	Mol. Cells	11(3)	295-302	2001	HMGRI,HMGRIII,HMGRII	HMGR I, OsHMGRI, Hmg1, HMGR1, HMGR 1, OsHMGR1,HMGR III, OsHMGRIII, Hmg3, HMGR3, HMGR 3, OsHMGR3, HMGR2, OsHMGR2, OsOMT,HMGR II, OsHMGRII, Hmg2, HMGR2, HMGR 2, OsHMGR2, OsHMGR2, HMGR1, OsHMGR1
22099		Hamby,R.K. and Zimmer,E.A.	Ribosomal RNA sequences for inferring phylogeny within the grass family (Poaceae)	Plant Syst. Evol.	160	29-37	1988	_	
22100		Han,Y., Jiang,J., Liu,H., Ma,Q., Xu,W., Xu,Y., Xu,Z. and Chong,K.	Overexpression of OsSIN, encoding a novel small protein, causes short internodes in Oryza sativa	Plant Sci.	169(3)	487-495	2005	SLR1,_,RAA1	slr1-1, slr1, slr, GAI, OsGAI, OsSLR1, Os SLR1, OsRGA1, OsGRAS-18, OsGRAS-18, GRAS-18, GRAS18, SLR-1,OsSIN,OsRAA1, OsFPFL1, FPFL1
22101	8883395	Hashimoto,J., Tanaka,H., Yamamoto,K. and Sasaki,T.	A cDNA clone encoding a C-type cyclin from rice	Plant Physiol.	112	862	1996	_	OsCycC_1, CycC_1
22104	16606701	He,G., Luo,X., Tian,F., Li,K., Zhu,Z., Su,W., Qian,X., Fu,Y., Wang,X., Sun,C. and Yang,J.	Haplotype variation in structure and expression of a gene cluster associated with a quantitative trait locus for improved yield in rice.	Genome Res.	16(5)	618-626	2006	LRK4,LRK1,LRK2,LRK8,LRK7,LRK3,LRK6,LRK5	OsLRK4, OsPSKR6, PSKR6,OsLRK1, OsPSKR9, PSKR9,OsLRK2, OsPSKR8, PSKR8,OsLRK8, OsPSKR1, PSKR1,OsLRK7, OsPSKR3, PSKR3,OsLRK3, OsPSKR7, PSKR7,OsLRK6, OsPSKR4, PSKR4,OsLRK5, OsPSKR5, PSKR5
22105		Higo,H., Kishimoto,N., Saito,A. and Higo,K.	Molecular cloning and characterization of a cDNA encoding a small GTP-binding protein related to mammalian ADP-ribosylation factor from rice	Plant Sci.	100(1)	41-49	1994	_	ARF, ARF1, OsARFA1b, ARFA1b
22108	16760221	Hirose,F., Shinomura,T., Tanabata,T., Shimada,H. and Takano,M.	Involvement of Rice Cryptochromes in De-etiolation Responses and Flowering.	Plant Cell Physiol.	47(7)	915-925	2006	CRY1B,AOS1,CRY2,CRY1A	OsCRY1b, OsCRY2, CRY1b, CRY1, OsCCT1b, CCT1b,OsAOS, OsAOS1, CYP74A1, OsAOS2, AOS2,OsCRY2,OsCRY1a, OsCRY1, CRY1a, CRY2, OsCCT1a, CCT1a
22112	16722339	Hou,F.Y., Huang,J., Lu,J.F., Wang,Z.F. and Zhang,H.S.	Isolation and expression analysis of plastidic glucose-6-phosphate dehydrogenase gene from rice (Oryza sativa L.).	Acta Genetica Sinica	33(5)	441-448	2006	_	OsG6PDH3, OsG6PDH2
22114	15968510	Hu,H., Xiong,L. and Yang,Y.	Rice SERK1 gene positively regulates somatic embryogenesis of cultured cell and host defense response against fungal infection.	Planta.	222(1)	107-117	2005	SG2,SERK1	OsSERK1, SERK1, OsBAK1, BAK1, OsSERK1/OsBAK1, OsBISERK1, BISERK1, OsSerk1, OsBAK1-1, 08SG2/OsBAK1, 08SG2, OsSG2,OsSERK1, OsSERK2, OsBiSERK1, SERK2, BiSERK1, OsSerk2, OsBAK1-2
22115	16924117	Hu,H., Dai,M., Yao,J., Xiao,B., Li,X., Zhang,Q. and Xiong,L.	Overexpressing a NAM, ATAF, and CUC (NAC) transcription factor enhances drought resistance and salt tolerance in rice	Proc. Natl. Acad. Sci. U.S.A.	103(35)	12987-12992	2006	ONAC2,ERD1	SNAC1, snac1, OsNAC9, ONAC002, ONAC2, ONAC033, ONAC33, ONAC043, ONAC43, ONAC044, ONAC44, OsNAC19, NAC19, SNAC1/ONAC002, OsSNAC1, OsNAC9, OsNAC1,CLPD1, ClpD1, OsERD1, OSClpD, osClpD, OsClpD1, OsClpD1.1, OsClpD1.2, OsClpD1.3, OsClpD1.4 
22116	16800383	Hu,T.Z., Wang,W.P., Cao,K.M., Xia,M. and Wang,X.P.	Isolation and characterization of OsGSTL1 promoter from rice.	Acta Genetica Sinica	33(6)	525-531	2006	GSTL1	OsGSTL1, GST1
22117		Hu,X., Song,F. and Zheng,Z.	Molecular characterization and expression analysis of a rice protein phosphatase 2C gene, OsBIPP2C1, and overexpression in transgenic tobacco conferred enhanced disease resistance and abiotic tolerance	Physiol. Plantarum	127(2)	225-236	2006	BIPP2C1,OSKAPP	OsBIPP2C1, OsPP45, PP45,OsKAPP, OsPP94, DLN179, OsDLN179
22118		Huang,J., Cao,Y., Zhang,H. and Yang,J.	Cloning and sequence analysis of a novel C2H2 zinc finger cDNA from rice	J. Nanjing Agri. Univ.	25(2)	114-116	2002		
22130	12644668	Jasinski,M., Ducos,E., Martinoia,E. and Boutry,M.	The ATP-binding cassette transporters: structure, function, and gene family comparison between rice and Arabidopsis.	Plant Physiol.	131(3)	1169-1177	2003	MRP2,MRP7,MRP10,MRP12,PDR3,PDR7,PDR15,PDR5,PDR13,PDR4,_,PDR14.P,MRP3,MRP11,MRP5,PDR12,MRP8,MRP6,MDR4,MDR5,MDR9,MDR8,MDR11,MDR3,MDR15,MDR16,MDR14,PDR6,PDR2,MRP9,MDR12,MRP4,MDR10,MDR17,PDR11,PDR10,PDR8,PDR1,MDR1,MDR6,MDR13,PDR9,MRP1,MDR7	OsABCC2, OsMRP2,OsABCC7, OsMRP7,OsABCC10, OsMRP10,OsABCC12, OsMRP12,OsABCG48, OsPDR3,OsABCG39, OsPDR7,OsABCG38, OsPDR15,ABCG43, OsABCG43, ABCG43/PDR5, OsPDR5,OsPDR13,OsPDR4,PMP2,OsPDR14, PDR14, pdr14,OsABCC3, ABCC3, OsMRP3,OsABCC11, ABCC11, OsMRP11, OsABCC8,OsABCC5, OsMRP5, AB3C_Ath ,OsABCG42, ABCG42, OsPDR12, OsABCG42_1, OsABCG42_2,OsABCC8, OsMRP8a, OsMRP8a, OsMRP8,OsABCC6, OsMRP6,OsABCB1, ABCB1, OsPGP1, OsMDR4,OsABCB3, ABCB3, OsPGP3, OsMDR5, OsISC34,OsABCB4, ABCB4, OsPGP4, OsMDR9, OsISC30,OsABCB6, ABCB6, OsPGP6, OsMDR8, OsISC31,OsABCB11, ABCB11, OsPGP11, OsMDR11, OsABCB11_1, OsABCB11_2,OsABCB17, ABCB17, OsPGP17, OsMDR3, OsABCB17_1,OsABCB20, ABCB20, OsPGP20, OsMDR15,OsABCB21, ABCB21, OsPGP21, OsMDR16,OsABCB22, ABCB22, OsPGP22, OsMDR14,OsPDR6, OsABCG31, OsABCG31_1,ABCG41, OsABCG41, OsPDR2, OsABCG41_1, OsABCG41_2,OsABCC9, ABCC9, OsMRP9, OsABCC14, ABCC14 ,OsABCB16, ABCB16, OsPGP16, OsMDR12,OsABCC4, ABCC4, OsMRP4,OsABCB8, ABCB8, OsPGP8, OsMDR10, OsISC29,OsABCB7, ABCB7, OsPGP7, OsMDR17,OsABCG35, OsPDR11, OsPDR2,OsABCG34, OsPDR10, OsPDR1,OsPDR8, PDR4, P0410E03.16, OsABCG37, OsPDR4,OsABCG45, OsPDR1, FCO1, OsPDR1.2, OsPDR1.3, OsPDR1.1,OsABCB15, ABCB15, OsPGP15, OsMDR1, OsMDR2, MDR2, OsSTA125,OsABCB2, ABCB2, OsPGP2, OsMDR6, OsABCB2_1, OsABCB2_2,OsABCB14, ABCB14, OsPGP14, OsMDR13, OsABCB14_1, OsABCB14_2,OsPDR9, ospdr9, OsPDR3, PDR3, OsABCG36/OsPDR9, OsABCG36,OsABCC1, ABCC1, OsABCC1-1, OsABCC1-2, OsMRP1,MDR4, OsABCB5, ABCB5, OsPGP5, OsMDR7, OsISC28, MRP4, OsMRP4, OsABCB11, ABCB11, MR7, OsMR7
22131	16359716	Jiang,J.F., Han,Y., Xing,L.J., Xu,Y.Y., Xu,Z.H. and Chong,K.	Cloning and expression of a novel cDNA encoding a mannose-specific jacalin-related lectin from Oryza sativa.	Toxicon	47(1)	133-139	2006	JAC1	OsJAC1, DIR54, OsDIR54, OsjDIR54, OsJRL29, JRL29
22133	16829581	Kaku,H., Nishizawa,Y., Ishii-Minami,N., Akimoto-Tomiyama,C., Dohmae,N., Takio,K., Minami,E. and Shibuya,N.	Plant cells recognize chitin fragments for defense signaling through a plasma membrane receptor.	Proc. Natl. Acad. Sci. U.S.A.	103(29)	11086-11091	2006	CEBIP	CEBiP, Os-LYP1, LYP1, OsCEBiP
22134		Kaminaka,H., Morita,S., Masumura,T. and Tanaka,K.	The electronic plant gene register.	Plant Physiol.	118(1)	329-331	1998	MDH12.1	OsMDH12.1, OsLdh12, Ldh12
22135	10557255	Kaminaka,H., Yokoi,H., Nosaka,Y., Sakamoto,A., Morita,S., Masumura,T. and Tanaka,K.	Cloning and characterization of manganese-superoxide dismutase gene from rice (accession No. AB026725)	Plant Physiol.	121(3)	1054-1055	1999	SODA1	SodA1, OsSODA1, Mn-SOD, Mn- SOD, OsMSD, MnSOD, OsMnSOD, MnSOD1, OsMnSOD1
22140		Kanjo,N. and Inokuchi,H.	Nucleotide sequence of a cDNA clone encoding thymidylate synthase from rice (Accession No. AB023402)	Plant Physiol.	120	634	1999	_	thyA
22142	16861806	Kanno,Y., Otomo,K., Kenmoku,H., Mitsuhashi,W., Yamane,H., Oikawa,H., Toshima,H., Matsuoka,M., Sassa,T. and Toyomasu,T.	Characterization of a rice gene family encoding type-a diterpene cyclases.	Biosci. Biotechnol. Biochem.	70(7)	1702-1710	2006	CPS4,KS1,KS4,CPS1,KS3,KSL10,KS6,KS5,KS8,KSL11,CPS2,KS7	OsCPS4, CYC1, OsCYC1, OsCyc1, cpsl3, OsCPSL3, OsCPSsyn, OsCyc1/OsCPS4, OsTPS15, Os-CPS4, TPS11, OsTPS11,OsKS1, KS1, KS1A, KSL1, OsKSL1, OsKS1A, OsKS1B, OsKS1C, Ks1, Os KS1, OsTPS26, TPS6, OsTPS6,OsKS4, KS4, KSL4, OsKSL4, DTS2, OsDTS2, OsTPS16, TPS16, TPS8, OsTPS8,OsCPS1, OsCPS1ent, OsCPS, Os CPS1, OsTPS4, TPS4, TPS29, OsTPS29, OsCPS1-L, OsCPS1-S,OsKS3, OSKS3, KS3, KSL3, OsKSL3, OsKS2, KS2, OsTPS25, TPS39, OsTPS39,OsKSL10, KS10, OsKS10, OsTPS33, TPS33, TPS21, OsTPS21,OsKS6, KS6, KSL6, OsKSL6, KS5, OsKS5, OsTPS9, TPS9, TPS14, OsTPS14,OsKS5, KS5, KSL5, OsKSL5, KSL5i, OsKSL5i, KSL5j, OsKSL5j, KS6, OsKS6, OsTPS8, TPS45, OsTPS45,OsKS8, KS8, KSL8, OsKSL8, DTC2, OsDTC2, OsDTC2/OsKS8, OsTPS32, TPS17, OsTPS17, KSL11, OsKSL11,OsKSL11, KS11, OsKS11,OsCPS2, cps2, OsCPS2ent, CYC2, OsCyc2, OsCYC2, OsCPSL1, cpsl1, OsCyc2/OsCPS2, OsTPS7, Os-CPS2, TPS13, OsTPS13,OsKS7, KS7, KSL7, OsKSL7, DTC1, OsDTC1, OsKS3, OsDTC1/OsKS7, OsTPS6, TPS6, TPS38, OsTPS38
22143	15891897	Kasai,K., Kanno,T., Akita,M., Ikejiri-Kanno,Y., Wakasa,K. and Tozawa,Y.	Identification of three shikimate kinase genes in rice: characterization of their differential expression during panicle development and of the enzymatic activities of the encoded proteins.	Planta.	222(3)	438-447	2005	SK1,SK2,SK3	OsSK1,OsSK2,OsSK3
22145		Kavakli,H.I., Wu,Y. and Okita,T.W.	DNA Sequence of a Near-Full Length cDNA Encoding the ADPglucose Pyrophosphorylase Large Subunit from Rice (Oryza sativa L) Endosperm (Accession No: U66041)(PGR96-116)	Plant Physiol.	112	1399	1996	AGPL2	OsAGPL2, osagpl2, APL2, OsAPL2, AGPiso, sh2, Sh2, GIF2, GAS1 
22146	16461585	Kawakatsu,T., Itoh,J., Miyoshi,K., Kurata,N., Alvarez,N., Veit,B. and Nagato,Y.	PLASTOCHRON2 regulates leaf initiation and maturation in rice.	Plant Cell	18(3)	612-625	2006	PLA1,PLA2	pla1, OsPLA1, plt1, CYP78A11,pla2, pla2(pla2-1, pla2-2), plt2, LHD2, OsLHD2
22147	16412485	Kim,B.G., Lee,Y., Hur,H.G., Lim,Y. and Ahn,J.H.	Flavonoid 3'-O-methyltransferase from rice: cDNA cloning, characterization and functional expression.	Phytochemistry	67(4)	387-394	2006	ROMT9	COMT, OsCOMT, ROMT-9, OsCOMT1, OsCAldOMT1, CAldOMT1, OsOMT, OsCOMT15, COMT15
22160		Lee,J.R., Lee,K.O., Park,J.H., Yoo,J.Y., Kang,J.S., Jeon,H.S., Kim,S.Y., Lee,Y.M., Kim,S.T., Lim,C.O., Bahk,J.D., Cho,M.J. and Lee,S.Y.	Molecular and functional characterization of a PEX14 cDNA from rice	Plant Sci.	166(1)	123-130	2004	PEX14	OsPex14, OsPex14p, OsPEX14
22164	16527928	Li,C., Zhou,A. and Sang,T.	Rice domestication by reducing shattering.	Science	311(5769)	1936-1939	2006	SH4	sh4, SH4, SHAT2, SHA1, qSH4, QSH4, OsSh4, Sh4, Osh4, OsMSL23, MSL23
22165	16842786	Li,D.F., Li,J., Ma,L., Zhang,L. and Lu,Y.T.	Calmodulin isoform-specific activation of a rice calmodulin-binding kinase conferred by only three amino-acids of OsCaM61.	FEBS Lett.	580(18)	4325-4331	2006	CALA,CRK1,CAM61	CALa*, Cal1, CaM-2, CAM2, CAM, OsCaM2, OsCam2, OsCaM1, CaM1,OsCRK1, OsCBK, CBK,CaM61, OsCaM61, OsCML1, OsCML1d
22166	16377757	Li,J., Zhu,S., Song,X., Shen,Y., Chen,H., Yu,J., Yi,K., Liu,Y., Karplus,V.J., Wu,P. and Deng,X.W.	A Rice Glutamate Receptor-Like Gene Is Critical for the Division and Survival of Individual Cells in the Root Apical Meristem	Plant Cell	18(2)	340-349	2006	GLR3.1	OsGLR3.2, GLR3.2, OsGLR3.1, OsGLR4.1, GLR4.1
22167	16753820	Li,K., Yang,J., Liu,J., Du,X., Wei,C., Su,W., He,G., Zhang,Q., Hong,F. and Qian,X.	Cloning, characterization and tissue-specific expression of a cDNA encoding a novel EMBRYONIC FLOWER 2 gene (OsEMF2) in Oryza sativa.	DNA Seq.	17(1)	74-78	2006	EMF2A	OsEMF2a, OsEMF2, EMF2, ZOS4-02, OsZOS4-02
22168		Li,T., Takano,T., Matsumura,H. and Takeda,G.	Molecular cloning of rice lactate dehydrogenase cDNA	Japan. J. Breed.	43	129-133	1993	LDH	OsLDH, OsMDH2.1, MDH2.1, OsLdh3, Ldh3
22173		Liu,J.M., Chen,S.N., Yan,B., Huang,X.Q. and Yang,M.Z.	Cloning and Sequencing of a Part-Length cDNA Coding for Glycerol-3-Phosphate Acyltransferase from Rice	Yunnan Zhiwu Yanjiu	20(3)	339-342	1998	_	GPAT, OsGPAT
22178		Lorbiecke,R. and Sauter,M.	Comparative analysis of PSK peptide growth factor precursor homologs	Plant Sci.	163(2)	321-332	2002	PSK3,PSK,PSK4,PSK2,PSK5	OsPSK3, GREP2, OMT9, OsPSK5, PSK5,OsPSK, PSK-alpha, PSK-beta,OsPSK4, Psk4,OsPSK2,OsPSK5
22179	16649109	Lou,Y., Ma,H., Lin,W.H., Chu,Z.Q., Mueller-Roeber,B., Xu,Z.H. and Xue,H.W.	The Highly Charged Region of Plant beta-type Phosphatidylinositol 4-kinase is Involved in Membrane Targeting and Phospholipid Binding.	Plant Mol. Biol.	60(5)	729-746	2006	_	OsPI4K1, OsPI4K2
22180	16820865	Lu,Q., Xu,Z.K. and Song,R.T.	OsFY, a homolog of AtFY, encodes a protein that can interact with OsFCA-gamma in rice (Oryza sativa L.).	Acta Biochim. Biophys. Sin. (Shanghai)	38(7)	492-499	2006	FCA,_	OsFCA, OsFCA-1, OsFCA-2, OsFCA-3, OsFCA-4, OsFCA-gamma,OsWD40-32, OsFY, FY,  OsDWD32, DWD32
22181		Ma,H., Zhu,X.P., Lou,X.M., Chen,L. and Zhang,J.	Construction and transient expression of a chimeric gene consisting of 5' upstream region of Wx gene and coding region of GUS gene in Rice developing seeds	Yi Chuan Xue Bao	22	353-360	1995	WX1	wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx
22182	16572174	Ma,J.F., Tamai,K., Yamaji,N., Mitani,N., Konishi,S., Katsuhara,M., Ishiguro,M., Murata,Y. and Yano,M.	A silicon transporter in rice.	Nature	440(7084)	688-691	2006	LSI1	lsi1, NIP2-1, OsNIP2;1, NIP2;1, OsLsi1, lsi(t), OsNIP2.1/OsLsi1/OsSIIT1, OsNIP2.1, NIP2.1
22185	16450172	Mahalakshmi,S., Christopher,G.S.B., Reddy,T.P., Rao,K.V. and Reddy,V.D.	Isolation of a cDNA clone (PcSrp) encoding serine-rich-protein from Porteresia coarctata T. and its expression in yeast and finger millet (Eleusine coracana L.) affording salt tolerance.	Planta.	224(2)	347-359	2006	_	PcSrp, Srp
22187	2518836	Masumura,T., Kidzu,K., Sugiyama,Y., Mitsukawa,N., Hibino,T., Tanaka,K. and Fujii,S.	Nucleotide sequence of a cDNA encoding a major rice glutelin	Plant Mol. Biol.	12(6)	723-725	1989	GLUB4	GluB4, GluB-4, GluB-5, GluB5, GluB-4/5
22189	16100779	International Rice Genome Sequencing Project	The map-based sequence of the rice genome.	Nature	436(7052)	793-800	2005		
22192		Medina,J. and Quatrano,R.S.	Characterization of a rice cDNA (Accession No. L76377) encoding an Osmotin-like protein (PGR96-058)	Plant Physiol.	111	1354	1996	_	OsLP, PR-5, 14b
22195	16753816	Meng,X.B., Zhao,W.S., Lin,R.M., Wang,M. and Peng,Y.L.	Molecular cloning and characterization of a rice blast-inducible RING-H2 type zinc finger gene.	DNA Seq.	17(1)	41-48	2006	_	OsRING-1,  OsRING341, RING341
22196		Midoh,N.	The probenazole-inducible rice PBZ1 promoter is regulated by salicylic acid in transgenic tobacco	Sci. Reports Meiji Seika Kaisha	36	42-54	1997	PR10A	PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 
22198	16623884	Mizuno,H., Wu,J., Kanamori,H., Fujisawa,M., Namiki,N., Saji,S., Katagiri,S., Katayose,Y., Sasaki,T. and Matsumoto,T.	Sequencing and characterization of telomere and subtelomere regions on rice chromosomes 1S, 2S, 2L, 6L, 7S, 7L and 8S.	Plant J.	46(2)	206-217	2006		
22201		Morita,S., Kaminaka,H., Yokoi,H., Masumura,T. and Tanaka,K.	Cloning and characterization of cytosolic ascorbate peroxidase cDNA from rice (PGR97-012)	Plant Physiol.	113	306	1997	APX2,APX1	OsAPX2, OsAPx02, APXb, OsAPx2, OSAPX2, APx2, cAPX, OsAPX1, APX1,OsAPX1, APXa, OsAPXa, OsAPx01, OsAPx1, OSAPX1, APx1, cAPX, APX2, cAPXa, OscAPXa
22203	16256063	Morrone,D., Jin,Y., Xu,M., Choi,S.Y., Coates,R.M. and Peters,R.J.	An unexpected diterpene cyclase from rice: functional identification of a stemodene synthase.	Arch. Biochem. Biophys.	448(1-2)	133-140	2006	KSL11	OsKSL11, KS11, OsKS11
22204	16939657	Mukherjee,K., Choudhury,A.R., Gupta,B., Gupta,S. and Sengupta,D.N.	An ABRE-binding factor, OSBZ8, is highly expressed in salt tolerant cultivars than in salt sensitive cultivars of indica rice.	BMC Plant Biol	6	18	2006	OSBZ8	OsBZ8, OsbZIP05, OsGBF1, GBF1, OsGBF1a, OsGBF1b
22206	16394586	Nagano,H., Onishi,K., Ogasawara,M., Horiuchi,Y. and Sano,Y.	Genealogy of the &quot;Green Revolution&quot; gene in rice.	Genes Genet. Syst.	80(5)	351-356	2005	SD1	sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2, OsPHQ1, OsPHq1, PHq1
22207	16284419	Nagasaki,H., Matsuoka,M. and Sato,Y.	Members of TALE and WUS subfamilies of homeodomain proteins with potentially important functions in development form dimers within each subfamily in rice.	Genes Genet. Syst.	80(4)	261-267	2005	NAL2,TAB1,_,NAL3,OSH15	nal2, nal3, cul2, OsWOX3A, WOX3A, Os NS, NS, OsNS, OsWOX3, OsNS1/OsNS2, OsPRS,Os WUS, WUS, OsWOX1, WOX1, OsWUS, OsTAB, TAB1/WUS, MOC3, MOC3/OsWUS, SRT1, MOC3/TAB1/SRT1, DC1, OsDC1, DAP1, OsDAP1,BEL1, OsBEL, BEL,nal3(nal2), nal2, nal3, cul3, OsWOX3A, WOX3A, WOX3, OsWOX3, OsNS, OsNS1/OsNS2, OsPRS,OSH15, OsH15, OSKN3, Oskn3, HOS3, D6, d6, OSH15/Oskn3, HB253, H15, OsKNOX3, KNOX3
22209	16249326	Nakamura,A., Fukuda,A., Sakai,S. and Tanaka,Y.	Molecular cloning, functional expression and subcellular localization of two putative vacuolar voltage-gated chloride channels in rice (Oryza sativa L.).	Plant Cell Physiol.	47(1)	32-42	2006	CLC2,CLC-1	CBSCLC3, OsCBSCLC3, OsCBSCLC3a, OsCBSCLC3b, OsCLC1, OsCLC-1, OsCLC2, OsCLC-2, CLC-2, OsCLC3, CLC3,OsCLC-1
22211		Nakayashiki,T. and Inokuchi,H.	Nuceotide sequence of a cDNA clone encoding glutamyl-tRNA reductase from rice (accession No. AB011416) (PGR 98-080)	Plant Physiol.	117	332	1998	HEMA	HEMA1, OsHEMA, GluTR, OsHEMA1, hemA
22215	17028208	Nanjo,Y., Oka,H., Ikarashi,N., Kaneko,K., Kitajima,A., Mitsui,T., Munoz,F.J., Rodriguez-Lopez,M., Baroja-Fernandez,E. and Pozueta-Romero,J.	Rice Plastidial N-Glycosylated Nucleotide Pyrophosphatase/Phosphodiesterase Is Transported from the ER-Golgi to the Chloroplast through the Secretory Pathway.	Plant Cell	18(10)	2582-2592	2006	NPP1	OsNPP1, OsPAP27b, PAP27B
22216		Nishizawa,Y. and Hibi,T.	Rice chitinase gene: cDNA cloning and stress-induced expression.	Plant Sci.	76	211-218	1991	CHT1	Cht1*(Chi1), Ch16, Cht1, CHT-1, CH16, RC24, OsChia1a, OsChia1, Chi1, Cht1*, Chi-1, Cht-1, Cht1, RCC1, OsCht-1, PR3, OsPR3
22220	16501255	Ohara,K., Yamamoto,K., Hamamoto,M., Sasaki,K. and Yazaki,K.	Functional Characterization of OsPPT1, Which Encodes p-Hydroxybenzoate Polyprenyltransferase Involved in Ubiquinone Biosynthesis in Oryza sativa.	Plant Cell Physiol.	47(5)	581-590	2006	_,_,_,HGGT	OsPPT1a,OsPPT1b,OsPPT1c,OsHGGT, OsHST, HST
22223	16381971	Ohyanagi,H., Tanaka,T., Sakai,H., Shigemoto,Y., Yamaguchi,K., Habara,T., Fujii,Y., Antonio,B.A., Nagamura,Y., Imanishi,T., Ikeo,K., Itoh,T., Gojobori,T. and Sasaki,T.	The Rice Annotation Project Database (RAP-DB): hub for Oryza sativa ssp. japonica genome information.	Nucleic Acids Res.	34(Database issue)	D741-D744	2006		
22225	12121993	Ominato,K., Akita,H., Suzuki,A., Kijima,F., Yoshino,T., Yoshino,M., Chiba,Y., Onouchi,H. and Naito,S.	Identification of a short highly conserved amino acid sequence as the functional region required for posttranscriptional autoregulation of the cystathionine gamma-synthase gene in Arabidopsis.	J. Biol. Chem.	277(39)	36380-36386	2002		
22230	10759541	Park,S. and Thornburg,R.W.	Characterization of a cDNA encoding UMP synthase from rice (Accession Nos. AF210322, AF210323, AF210324, and AF210325) (PGR00-043)	Plant Physiol.	122(4)	1458	2000	_,_	UMPS1,UMPS2
22232	16891402	Perez-Ruiz,J.M., Spinola,M.C., Kirchsteiger,K., Moreno,J., Sahrawy,M. and Cejudo,F.J.	Rice NTRC Is a High-Efficiency Redox System for Chloroplast Protection against Oxidative Damage.	Plant Cell	18(9)	2356-2368	2006	CDSP32,NTRC,_,TRXX,_	CDSP32,OsNTRC, NtrC, OsGRL15,CDSP32,Trx x, OsTrx x, OsTrx16, Trx16,BAS1, OsTPX, Os2-Cys PrxA, 2-Cys PrxA, Os2-CysPrxA, 2-CysPrxA, 2CYSPRXA, OsPRX2, PRX2
22233	16963705	Piegu,B., Guyot,R., Picault,N., Roulin,A., Saniyal,A., Kim,H., Collura,K., Brar,D.S., Jackson,S., Wing,R.A. and Panaud,O.	Doubling genome size without polyploidization: Dynamics of retrotransposition-driven genomic expansions in Oryza australiensis, a wild relative of rice.	Genome Res.	16(10)	1262-1269	2006	RIRE1,KANGOUROU,DINGO,WALLABI	RIRE1, Osr11, Rire1,Kangourou,Dingo,Wallabi
22235		Qi,Y.H., Yamauchi,Y., Ling,J.Q., Kawano,N., Li,D. and Tanaka,K.	The submergence-induced gene OsCTP in rice (Oryza sativa L.) is similar to Escherichia coli cation transport protein ChaC	Plant Sci.	168(1)	15-22	2005	_	OsARP, OsCTP
22236	16980130	Qiu,S.-P., Huang,J., Pan,L.-J., Wang,M.-M. and Zhang,H.-S.	Salt Induces Expression of RH3.2A, Encoding an H3.2-type Histone H3 Protein in Rice (Oryza sativa L.).	Acta Genetica Sinica	33(9)	833-840	2006	_	RH3.2A
22237	16387888	Qu,S., Liu,G., Zhou,B., Bellizzi,M., Zeng,L., Dai,L., Han,B. and Wang,G.L.	The broad-spectrum blast resistance gene pi9 encodes a nucleotide-binding site-leucine-rich repeat protein and is a member of a multigene family in rice.	Genetics	172(3)	1901-1914	2006	PI5-2,PI9,PI3	Pi3, Pi5, Pi-3(t), Pi-3, Pi3(t), Pi5(t), Pi5-2, Pii,  RMg22, RMg21,Pi9(t), Pi9(t)*, Pi9, Pi-9(t),Pi3, Pi5, Pi-3(t), Pi-3, Pi3(t), Pi5(t), Pi5-1, Pii,  RMg22, RMg21
22242		Reddy,P.M.S. and Padayatty,J.D.	5S-rRNA genes in rice embryos	Plant Mol. Biol.	9	443-451	1987	R5S1,_,_	R5s1*, r5s, R5s1,,
22243		Reddy,P.M.S. and Padayatty,J.D.	Effects of 5' flanking sequences and changes in the 5' internal control region on the transcription of rice Gly-tRNA-GCC gene	Plant Mol. Biol.	11(5)	575-583	1988	_	trnG(GCC), trnG
22245	16805736	Rook,F., Corke,F., Baier,M., Holman,R., May,A.G. and Bevan,M.W.	Impaired sucrose induction1 encodes a conserved plant-specific protein that couples carbohydrate availability to gene expression and plant growth	Plant J.	46	1045-1058	2006	_	OsISI1
22249		Sakaguchi,N., Furukawa,T., Shimada,H., Hashimoto,J., Sakaguchi,K. and Umeda,M.	Isolation and characterization of a rice cDNA encoding B1-type cyclin-dependent kinase	Plant Biotechnol.	23(2)	211-214	2006	CDKB;1	CDKB;1, Orysa;CDKB;1, CDKB1;1, Orysa;CDKB1;1, OsCDKB1.1, CDKB1.1, OsCDKB1;1
22250		Sakamoto,M., Satozawa,T., Kishimoto,N., Higo,K., Shimada,H. and Fujimura,T.	Structure and RFLP mapping of a rice sucrose phosphate synthase (SPS) gene that is specifically expressed in the source organ	Plant Sci.	112(2)	207-217	1995	SPS1	sps1, OsSPS1, SPS
22251	16730655	Saotome,A., Kimura,S., Mori,Y., Uchiyama,Y., Morohashi,K. and Sakaguchi,K.	Characterization of four RecQ homologues from rice (Oryza sativa L. cv. Nipponbare).	Biochem. Biophys. Res. Commun.	345(4)	1283-1291	2006	-,-	OsRecQ1,OsRecQ2
22255	16496151	Sato,K., Mase,K., Nakano,Y., Nishikubo,N., Sugita,R., Tsuboi,Y., Kajita,S., Zhou,J., Kitano,H. and Katayama,Y.	3-Deoxy-D-arabino-heptulosonate 7-phosphate synthase is regulated for the accumulation of polysaccharide-linked hydroxycinnamoyl esters in rice (Oryza sativa L.) internode cell walls.	Plant Cell Rep.	25(7)	676-688	2006	DNRL1,_	OsDAHP1, DAHP1, DAHPS, OsDAHPS2, DAHPS2, OsDNRL1,OsDAHPS1, DAHPS1
22258		Senthilkumar,P., Parani,M., Lakshmi,M., Jithesh,M.N. and Parida,A.	Histone H3 gene from Porteresia coarctata (Accession No. AF109910) (PGR99-023)	Plant Physiol.	119(2)	806	1999	_	OsH3
22261	16228246	Sharma,T.R., Madhav,M.S., Singh,B.K., Shanker,P., Jana,T.K., Dalal,V., Pandit,A., Singh,A., Gaikwad,K., Upreti,H.C. and Singh,N.K.	High-resolution mapping, cloning and molecular characterization of the Pi-kh gene of rice, which confers resistance to Magnaporthe grisea.	Molecular Genetics & Genomics (Molecular General Genetics up to 2001)	274(6)	569-578	2005	PIK,PIKH	Pik, RMg8, Pi-k, Pik-2, Pik-1, Pik1, Pik2, Pik-H4, Pikp-1, Pikh-1, Pik1-H4, Pikh-2, Pik2-H4,Pi-kh, Pi k-h, Pi54, Pi54rh, Pi-k(h), Pik-h, Pikh
22266	16624618	Shrestha,R., Kim,S.C., Dyer,J.M., Dixon,R.A. and Chapman,K.D.	Plant fatty acid (ethanol) amide hydrolases.	Biochim. Biophys. Acta	1761(3)	324-334	2006	_	FAAH
22267		Sikka,V.K., Choi,S.-B., Kavakli,I.H., Sakulsingharoj,C., Gupta,S., Ito,H. and Okita,T.W.	Subcellular compartmentation and allosteric regulation of the rice endosperm ADPglucose pyrophosphorylase	Plant Sci.	161(3)	461-468	2001	AGPL2	OsAGPL2, osagpl2, APL2, OsAPL2, AGPiso, sh2, Sh2, GIF2, GAS1 
22268	16755461	Song,D., Chen,J., Song,F. and Zheng,Z.	A novel rice MAPK gene, OsBIMK2, is involved in disease-resistance responses.	Plant Biol.	8(5)	587-596	2006	WJUMK1,BWMK1,MSRMK2,MAPK4,_	OsMPK20-4, MPK20-4, OsWJUMK, OsWJUMK1, WJUMK, MAPK8, OsMPK8, MPK8, OsMAPK20-4, MAPK20-4, OsMPKG1, MPKG1,OsBWMK1, MPK12, MAPK1, OsMAPK1, OsMPK12, OsMPK17-1, MPK17-1, OsBWMK1L, OsBWMK1M, OsBWMK1S, OsMAPK17-1, MAPK17-1, MAPK12, OsMAPK12,OsMSRMK2, OsMAPK5, OsMAP1, OsMPK3, OsBIMK1, OsMAPK2, MPK5, BIMK1, MAPK2, MAPK5, MPK3, OsMPK5, OsMAPK3, OsMAPK5b, MAPK3,OsMAPK4, OsMAP2, OsMSRMK3, OsMPK4, OsMPK7, MAP2, MSRMK3, MPK4, MPK7, MAPK7, OsMAPK7,OsMPK13, OsMAPK2, OsBIMK2, BIMK2, MPK13, MAPK2, OsMAPK17-2, MAPK17-2
22269	16786279	Su,W., Lin,C., Wu,J., Li,K., He,G., Qian,X., Wei,C. and Yang,J.	Molecular Cloning and Expression of a cDNA Encoding Lon Protease from rice (Oryza sativa).	Biotechnol. Lett.	28(12)	923-927	2006	_	OsLon1, LON1, OsLonP4, LONP4, LON2 
22270	16640604	Su,Y., Kwon,C.S., Bezhani,S., Huvermann,B., Chen,C., Peragine,A., Kennedy,J.F. and Wagner,D.	The N-terminal ATPase AT-hook-containing region of the Arabidopsis chromatin-remodeling protein SPLAYED is sufficient for biological activity.	Plant J.	46(4)	685-699	2006	BRM,SYD,_	OsCHR707, CHR707, OsBRM, OsBrd11, Brd11,OsCHR720, OsSYD, CHR720,OsCHR719
22274	16461382	Sun,X., Cao,Y. and Wang,S.	Point Mutations with Positive Selection Were a Major Force during the Evolution of a Receptor-Kinase Resistance Gene Family of Rice	Plant Physiol.	140(3)	998-1008	2006	MRKd,MRKc,MRKa,TRKE,TRKF,TRKG,TRKH,TRKI,TRKJ,XA3	MRKd, RKd, TRKd,MRKc, RKc, TRKc,MRKa, RKa, TRKa,TRKe, Rke, NRKe, 9RKe ,TRKf,TRKg,TRKh,TRKi,TRKj,Xa-3, Xa3 (Xa4b, Xa6, Xa9, Xa w), Xa3, Xaw, Xa6, Xa9, Xa4-b, XA26, Xa26(t), Xa26(t)*, Xa26, RKb, MRKb, MRKB, TRKb, Xa3/Xa26
22275		Suzuka,I., Koga-Ban,Y., Sasaki,T., Minobe,Y. and Hashimoto,J.	Identification of cDNA clones for rice homologs of the human immunodeficiency virus-1 Tat binding protein and subunit 4 of human 26S protease (proteasome)	Plant Sci.	103(1)	33-40	1994	TBP2,SPL43	TBPOs-2, OsTBP2, OsRpt2a, Rpt2a, OsRPT2a,TBP1, TBPOs-1, OsTBP1, OsRpt5a, Rpt5a, OsRPT5A, OsSPL43
22276	16399804	Sweeney,M.T., Thomson,M.J., Pfeil,B.E. and McCouch,S.	Caught red-handed: rc encodes a basic helix-loop-helix protein conditioning red pericarp in rice.	Plant Cell	18	283-294	2006	RC	Rc, OsbHLH017, OsbHLH17, SD7-1, qSD7-1/qPC7, OsGL3C, GL3C
22279		Takahashi,S., Hirose,T., Imaizumi,N. and Ohsugi,R.	Cloning of a cDNA encoding cytosolic fructose-1,6-bisphosphatase from rice (Oryza sativa L.) (Accession No. AB007193) (PGR 98-084)	Plant Physiol.	117	332-333	1998		
22280		Takahashi,S., Hirose,T., Imaizumi,N. and Ohsugi,R.	Cloning of a cDNA encoding plastidic fructose-1,6-bisphosphatase from rice (Oryza sativa L.) (Accession No. AB007194) (PGR 98-083)	Plant Physiol.	117	332	1998	_	OsCFR
22288		To,K.Y., Suen,D.F., Cheng,M.C., Chen,L.F.O. and Chen,S.C.G.	Cloning and sequencing of a rice cDNA (Accession No. U74321) encoding rubisco activase (PGR97-011)	Plant Physiol.	113	306	1997	RCA	OsRcaII, rca, rcaII, OsRcaI, RCAI, ME137, OsRCA1, RCA, RCAalpha, OsRCAalpha, OsRCAbeta
22293	16193045	Ueguchi-Tanaka,M., Ashikari,M., Nakajima,M., Itoh,H., Katoh,E., Kobayashi,M., Chow,T., Hsing,Y.C., Kitano,H., Yamaguchi,I. and Matsuoka,M.	GIBBERELLIN INSENSITIVE DWARF1 encodes a soluble receptor for gibberellin.	Nature	437(7059)	693-698	2005	GID1	gid1, OsGID1, Thl, Os GID1
22294		Ueno,M., Kihara,J., Honda,Y., Isota,J. and Arase,S.	DNA fragmentation in Sekiguchi lesion mutants of rice infected with Magnaporthe grisea	J. Gen. Plant Pathol.	70(6)	321-328	2004	_,SL,TYDC	MAO,OsSL, sl (spl1), sl*, sl, spl1, CYP71P1, Os CYP71P1, T5H, OsT5H, CYP71A1, OsCYP71A1, OsLLM1, LLM1, LLM1/OsSL, ELL1, OsELL1, ELL1/SL, OsT5H1,TyDC, OsTyDC, OsTYDC, TDC, OsTDC3, TDC3, OsTDC1
22296	10577163	Vigneswaran,A. and Wurtzel,E.T.	A Rice cDNA Encoding Phytoene Desaturase (Accession No. AF049356) (PGR99-131)	Plant Physiol.	121(1)	312	1999	PDA	PDS1, PDS, OsPDS, Pds, OsPDA
22297	16220344	Wang,F., Wang,H., Liu,B. and Wang,J.	Cloning and characterization of a novel splicing isoform of the iron-superoxide dismutase gene in rice (Oryza sativa L.).	Plant Cell Rep.	24(12)	734-742	2006	SODB	SodB, Fe-SOD, Fe- SOD, OsFe-SOD, Fe+-SOD, OsFe+-SOD, OsFe-SODa, OsFe-SODb, OsFeSODb, FeSODb, OsFSD1.2, FSD1.2, FeSOD2, OsFSD2, FSD2, OsFSD1, FSD1, ALM1, OsALM1
22299	16432735	Wang,H.W., Zhang,J.S., Gai,J.Y. and Chen,S.Y.	Cloning and comparative analysis of the gene encoding diacylglycerol acyltransferase from wild type and cultivated soybean.	Theor. Appl. Genet.	112(6)	1086-1097	2006	DGAT1-1	OsDGAT, DGAT, OsDGAT1-1
22301		Wang,Q., Chen,J., Wang,X., Sun,J. and Sha,W.	Molecular cloning and expression analysis of the rice triose phosphate/phosphate translocator gene	Plant Sci.	162(5)	785-790	2002	TPT1	OsTPT1, TPT, tpt
22303		Wang,X.B., Xia,M., Chen,Q., Wu,Z. and Wu,P.	Identification of a new small GTP-binding protein gene OsRab5a, genomic organization, and expression pattern analysis during nitrate supply and early nutrient starvation in rice (Oryza sativa L.) root	Plant Sci.	163(2)	273-280	2002	GLUP4	glup4(esp8), esp8, glup4, OsRab5B2, Rab5a, OsRab5a, GPA1/Rab5a, GPA, GLUP4/Rab5, GLUP4/Rab5a, GPA1, OsGPA1
22304		Wang,X.J., Jiang,F.D., Gang,L.X. and Zhen,Z.	Isolation and characterization of rice EPSP synthase and its chromosome location	Sci. Sin., Ser. B, Chem. Biol. Agric. Med. Earth Sci.	44		2001		
22305	16489123	Wang,Z., Zou,Y., Li,X., Zhang,Q., Chen,L., Wu,H., Su,D., Chen,Y., Guo,J., Luo,D., Long,Y., Zhong,Y. and Liu,Y.G.	Cytoplasmic Male Sterility of Rice with Boro II Cytoplasm Is Caused by a Cytotoxic Peptide and Is Restored by Two Related PPR Motif Genes via Distinct Modes of mRNA Silencing.	Plant Cell	18(3)	676-687	2006	ATP6,RF1B,RF1,_,AATP6	atp6, OsPOX1, prx3, POX1,RF1b, Rf-1B, PPR7,Rf1 (Rf-1), rf-1, PPR791, PPR8-1, Rf-1, Rf1, Rf-1A, Rf5, Rf1a, RF5, Rf5(t)*(Rf(t)*), RF1A, PPR6, PLS31, OsPLS31,atp6, N-atp6, B-ATP6, B-atp6, atp6-1,A-atp6
22309		Watanabe,K., Higuchi,T., Sakai,T. and Yamaya,T.	The electronic Plant Gene Register.	Plant Physiol.	111(1)	347-348	1996	ASN	OsASN2, OsAS, OsAS2, AS2
22311	16636480	Wei,J.Y., Li,A.M., Li,Y., Wang,J., Liu,X.B., Liu,L.S. and Xu,Z.F.	Cloning and Characterization of an RNase-Related Protein Gene Preferentially Expressed in Rice Stems.	Biosci. Biotechnol. Biochem.	70(4)	1041-1045	2006	RNS4	OsRNS4, OsRRP, RNaseDIS
22312	10594126	Womack,J.S., Randall,J. and Kemp,J.D.	Oryzacystatin-I has a signal peptide (Accession No. AF164378) (PGR99-175)	Plant Physiol.	121(4)	1383	1999		
22313	9841365	Wu,J., Cramer,C. and Hatzios,K.K.	Isolation of a full-length cDNA encoding the second glutathione S-transferase from rice (Accession No. AF062403) (PGR98-136)	Plant Physiol.	118(1)	329	1998	GSTF2	OsGSTF2, RGSTII
22314		Wu,J., Cramer,C. and Hatzios,K.K.	Nucleotide sequence of a cDNA encoding glutathione S-transferase from rice (Oryza sativa) (accession no. AJ002380). (PGR98-120)	Plant Physiol.	117(3)	1126-1126	1998		
22317		Xiang,T., Wang,L. and Pang,J.	Cloning and characterization of a full-length cab gene encoding the light-harvesting chlorophyll a/b-binding protein in rice(Oryza sativa L.)	Zuo Wu Xue Bao	31(9)	1227-1232	2005	DYE1	cab, cab-n8, Lhca4, OsLhca4
22320		Xu,B., Xing,Y., Wang,Z., Zhang,J., Zhu,S. and Hong,M.	Cloning, characterization of cDNA encoding rice aldehyde dehydrogenase, and analysis of its expression in male-sterile lines	Chih Wu Sheng Li Hsueh Pao	26(3)	206-212	2000		
22321	16900200	Xu,K., Xu,X., Fukao,T., Canlas,P., Maghirang-Rodriguez,R., Heuer,S., Ismail,A.M., Bailey-Serres,J., Ronald,P.C. and Mackill,D.J.	Sub1A is an ethylene-response-factor-like gene that confers submergence tolerance to rice	Nature	442(7103)	705-708	2006	SUB1B,SUB1C,SUB1A,ADH1	Sub1B, OsSUB1B, OsERF#063, OsERF063, ERF063, OsERF63, ERF63, AP2/EREBP#166, AP2/EREBP166,Sub1C, OsSUB1C, OsERF#073, OsERF073, ERF073, OsERF73, ERF73, AP2/EREBP#122, AP2/EREBP122, SUB1B,Sub1A, Sub1A-1, Sub1A-2, OsSUB1A,Adh1, Adh1/2, adh1/adh2, OsADH1
22327	16326928	Yamaguchi,T., Lee,D.Y., Miyao,A., Hirochika,H., An,G. and Hirano,H.Y.	Functional diversification of the two C-class MADS box genes OSMADS3 and OSMADS58 in Oryza sativa.	Plant Cell	18	15-28	2006	RAG,MADS58	MADS3, OsMADS3, OsMADS3(t), RMADS222, RAG1, rf3,OsMADS58
22328	16717423	Yamasaki,T., Deguchi,M., Fujimoto,T., Masumura,T., Uno,T., Kanamaru,K. and Yamagata,H.	Rice Bifunctional alpha-Amylase/Subtilisin Inhibitor: Cloning and Characterization of the Recombinant Inhibitor Expressed in Escherichia coli	Biosci. Biotechnol. Biochem.	70(5)	1200-1209	2006	_	RASI, OsEnS-69
22333		Yang,Q.Z., Yang,P.W., Wang,Q., Liu,J.M., Yan,B., Li,J.R. and Huang,X.Q.	Cloning and Sequencing of Disease Resistance Gene Analogues in Rice (Oryza sativa L.)	Zhongguo Shuidao Kexue	15(4)	241-247	2001	RLCK284,_,_,_,_,_,_,WAK105,_,_,_,_,_,_,_,WAK85,SIK2,SDRLK52,SDRLK21,_,_,_,_,DRUS2,MTD2,8TAK2,_	OsRLCK284, YK12, PTK16, OsPTK16, STK, OsSTK,YR5,YR14, YR18, YR26,YR12,YR19,YR36,YR35,OsWAK105, YK3,YK19,YK13,YK15,YK20,YK25,YK26,YK30,OsWAK85, YK10,OsSIK2, YK14, SDRLK-SIK2, OsSDRLK-SIK2,YK18, SDRLK-52, OsSDRLK-52, OsSDRLK52,YK28, SDRLK-21, OsSDRLK-21, OsSDRLK21,YK35,YR2, YR6, YR9, YR10, YR21, YR23,YR48,YR1, YR7, YR11, YR20, YR22, YR24,YK1, OsCrRLK1L5, CrRLK1L5, OsDRUS2, OsMRLK3, MRLK3, FLR2, OsFLR2,OsMTD2, YK11, OsCrRLK1L11, CrRLK1L11, OsMRLK29, MRLK29, FLR6, OsFLR6,Os8Tak2, YK21, OsRLCK12, RLCK12, RLK20, OsRLK20,YR16, YR29, rNBS42
22335		Yau,C.P. and Yip,W.K.	Nucleotide sequence of a full-length cDNA encoding an ethylene receptor from rice (Accession No. AF013979) (PGR97-134)	Plant Physiol.	115	315	1997	ERS1	OS-ERS1, OsERS1, OsERS1a, OsERS1b, OSERS
22337	16133310	Yoshida,K. and Miyashita,N.T.	Nucleotide polymorphism in the Adh2 region of the wild rice Oryza rufipogon.	Theor. Appl. Genet.	111(6)	1215-1228	2005	ADH1,ADH2	Adh1, Adh1/2, adh1/adh2, OsADH1,Adh2*, Adh2, OsADH2
22343	16443696	Zhang,K., Qian,Q., Huang,Z., Wang,Y., Li,M., Hong,L., Zeng,D., Gu,M., Chu,C. and Cheng,Z.	GOLD HULL AND INTERNODE2 Encodes a Primarily Multifunctional Cinnamyl-Alcohol Dehydrogenase in Rice	Plant Physiol.	140(3)	972-983	2006	GH2	gh2, CAD2, CAD, OsCAD2, OsGH2 
22344	16525890	Zhang,L., Tao,J., Wang,S., Chong,K. and Wang,T.	The Rice OsRad21-4, an Orthologue of Yeast Rec8 Protein, is Required for Efficient Meiosis.	Plant Mol. Biol.	60(4)	533-554	2006	RAD21-2,RAD21,RAD21-3,RAD21-4	OsRad21-2,OsRad21, OsRAD21-1, REC8,OsRad21-3,OsRad21-4, REC8, OsREC8, OsRAD21-4
22345		Zhang,M., Xu,S. and Liang,C.	Identification of a rice cDNA encoding the acyl-CoA-binding protein (ACBP)	Chih Wu Sheng Li Hsueh Pao	25	327-331	1999	ACBP	ACBP
22346		Zhang,S., Hu,W., Wang,L., Lin,C., Cong,B., Sun,C. and Luo,D.	TFL1/CEN-like genes control intercalary meristem activity and phase transition in rice	Plant Sci.	168(6)	1393-1408	2005	RCN1	Rcn1, FDR2, Fdr2, RCN1/FDR2, OsRCN1
22347	16753814	Zhou,G.A., Jiang,Y., Yang,Q., Wang,J.F., Huang,J. and Zhang,H.S.	Isolation and characterization of a new Na+/H+ antiporter gene OsNHA1 from rice (Oryza sativa L.).	DNA Seq.	17(1)	24-30	2006	SOS1	OsSOS1, OsNHA1, NHA1, SOS1/NHX7, NHX7, OsNHX7
22350	16399803	Zhu,Y., Nomura,T., Xu,Y., Zhang,Y., Peng,Y., Mao,B., Hanada,A., Zhou,H., Wang,R., Li,P., Zhu,X., Mander,L.N., Kamiya,Y., Yamaguchi,S. and He,Z.	ELONGATED UPPERMOST INTERNODE Encodes a Cytochrome P450 Monooxygenase That Epoxidizes Gibberellins in a Novel Deactivation Reaction in Rice.	Plant Cell	18(2)	442-456	2006	EUI1	eui1, GA16,17ox, CYP714D1, EUI, CYP714D1/EUI, OsEUI, LG5, OsLG5
22351		Zhu,Z.P.	A cDNA sequence of 10 kDa prolamin from long grain rice (Oryza sativa L. subsp.indica) (EMBLX84649) (PGR95-033)	Plant Physiol.	108(1)	1748-1748	1995	CYSR10	Prol-01, CysR10, OsCysR10, crP10, pro10.1, Ospro10.1
22363	17090310	DeMarco,R., Venancio,T.M. and Verjovski-Almeida,S.	SmTRC1, a novel Schistosoma mansoni DNA transposon, discloses new families of animal and fungi transposons belonging to the CACTA superfamilyy	BMC Evol. Biol.	6	89	2006		
22364	17289016	Jiang,S.Y., Cai,M. and Ramachandran,S.	ORYZA SATIVA MYOSIN XI B controls pollen development by photoperiod-sensitive protein localizations 	Dev. Biol.	304(2)	579-592	2007	_	OSMYOXIB, OsMyoXIB
22365	17076258	Hu,X., Song,F. and Zheng,Z.	Molecular cloning and expression analysis of rice OsTVLP1, encoding a protein with similarity to TGF-beta receptor interacting proteins and vacuolar assembly Vam6p/Vps39p proteins	DNA Seq.	17(2)	152-158	2006	_	OsTVLP1
22366	17312944	Gupta,S., Ciungu,A., Jameson,N. and Lal,S.K.	Alternative splicing expression of U1 snRNP 70K gene is evolutionary conserved between different plant species	DNA Seq.	17(4)	254-261	2006	_	U1-70K
22368		Mertens,J.A. and Skory,C.D.	Isolation and characterization of a second glucoamylase gene without a starch binding domain from Rhizopus oryzae	Enzyme Microb. Technol.	40(4)	874-880	2007		
22370	17210932	Rice Annotation Project	Curated Genome Annotation of Oryza sativa ssp. Japonica and Comparative Genome Analysis with Arabidopsis thaliana	Genome Res.	17(2)	175-183	2007		
22371	16000456	Rakeman,J.L., Bui,U., Lafe,K., Chen,Y.C., Honeycutt,R.J. and Cookson,B.T.	Multilocus DNA sequence comparisons rapidly identify pathogenic molds	J. Clin. Microbiol.	43(7)	3324-3333	2005		
22372	15781441	Kobayashi,T., Suzuki,M., Inoue,H., Itai,R.N., Takahashi,M., Nakanishi,H., Mori,S. and Nishizawa,N.K.	Expression of iron-acquisition-related genes in iron-deficient rice is co-ordinately induced by partially conserved iron-deficiency-responsive elements	J. Exp. Bot.	56	1305-1316	2005	IRT2,DMAS1,FDH,_,YSL15,MTN,SAMS1,DEP,NAS2,IDI4,IDI2,SAMS2,NAS1,MTI4A,APT1,MTK1,NAAT1,SIP2	OsIRT2, OsIRT1, OsZIP15, ZIP15,OsDMAS1, OsAKR5, AKR5,OsFDH, FDH 1, FDH1, OsFDH1,OsRPI, RPI,OsYSL15, OsYs7,OsMTN,OsSAMS1, OS-SAMS1, OsSAMS, SAM, SAMS,OsDEP,OsNAS2, OsNAS1,OsIDI4,OsIDI2,OsSAM2, SAM2, OsSAMS2, OS-SAMS2,OsNAS1,OsMT1a, OsMT1a1, OsMT1a2, OsMT-I-4a, OsIDS1, OsMT1b, MT1b,OsAPT1, APRT,OsMTK, OsMTK1, MTK,OsNAAT1,Sip2, OsARD1, ARD1, OsIDI1, IDI1, OsIDI1L/OsARD1
22379	17216491	Lucyshyn,D., Busch,B.L., Abolmaali,S., Steiner,B., Chandler,E., Sanjarian,F., Mousavi,A., Nicholson,P., Buerstmayr,H. and Adam,G.	Cloning and characterization of the ribosomal protein L3 (RPL3) gene family from Triticum aestivum 	Molecular Genetics & Genomics (Molecular General Genetics up to 2001)	277(5)	507-517	2007	RPL3A,RPL3B	OsRPL3A, ARP1, ARP3,OsRPL3B, RPL3, OsRPL3
22380	17324757	Liou,G.-Y., Chen,S.-R., Wei,Y.-H., Lee,F.-L., Fu,H.-M., Yuan,G.-F. and Stalpers,J.A.	Polyphasic approach to the taxonomy of the Rhizopus stolonifer group 	Mycol. Res.	111(PT 2)	196-203	2007		
22381	17417637	Song,X.J., Huang,W., Shi,M., Zhu,M.Z. and Lin,H.X.	A QTL for rice grain width and weight encodes a novel RING-type E3 ubiquitin ligase	Nat Genet	39(5)	623-630	2007	GW2	OsGW2, OsRING429, RING429, GNL44, OsGNL44
22387	17141283	Xu,M., Wilderman,P.R., Morrone,D., Xu,J., Roy,A., Margis-Pinheiro,M., Upadhyaya,N.M., Coates,R.M. and Peters,R.J.	Functional characterization of the rice kaurene synthase-like gene family	Phytochemistry	68(3)	312-326	2007	KS3,KS5,KS4,KS7,KSL10,KSL11,KS2,KS6,KS8,KS1	OsKS3, OSKS3, KS3, KSL3, OsKSL3, OsKS2, KS2, OsTPS25, TPS39, OsTPS39,OsKS5, KS5, KSL5, OsKSL5, KSL5i, OsKSL5i, KSL5j, OsKSL5j, KS6, OsKS6, OsTPS8, TPS45, OsTPS45,OsKS4, KS4, KSL4, OsKSL4, DTS2, OsDTS2, OsTPS16, TPS16, TPS8, OsTPS8,OsKS7, KS7, KSL7, OsKSL7, DTC1, OsDTC1, OsKS3, OsDTC1/OsKS7, OsTPS6, TPS6, TPS38, OsTPS38,OsKSL10, KS10, OsKS10, OsTPS33, TPS33, TPS21, OsTPS21,OsKSL11, KS11, OsKS11,OsKS2, KSL2, OsKSL2, OsTPS27, TPS27, TPS2, OsTPS2,OsKS6, KS6, KSL6, OsKSL6, KS5, OsKS5, OsTPS9, TPS9, TPS14, OsTPS14,OsKS8, KS8, KSL8, OsKSL8, DTC2, OsDTC2, OsDTC2/OsKS8, OsTPS32, TPS17, OsTPS17, KSL11, OsKSL11,OsKS1, KS1, KS1A, KSL1, OsKSL1, OsKS1A, OsKS1B, OsKS1C, Ks1, Os KS1, OsTPS26, TPS6, OsTPS6
22396	17144896	Lee,D.Y., Lee,J., Moon,S., Park,S.Y. and An,G.	The rice heterochronic gene SUPERNUMERARY BRACT regulates the transition from spikelet meristem to floral meristem 	Plant J.	49(1)	64-78	2007	SNB	AP2/EREBP#073, AP2/EREBP73, AP2-3, OsAP2-3, SSH1, OsSSH1, OsSNB, DLN181, DLN181a, DLN181b, OsDLN181, OsDLN181a, OsDLN181b, SUI4, OsSUI4, SUI4/SNB
22397	17217421	Qian,W., Yu,C., Qin,H., Liu,X., Zhang,A., Johansen,I.E. and Wang,D.	Molecular and functional analysis of phosphomannomutase (PMM) from higher plants and genetic evidence for the involvement of PMM in ascorbic acid biosynthesis in Arabidopsis and Nicotiana benthamiana	Plant J.	49(3)	399-413	2007	_	OsPMM
22398	17355435	Colmenero-Flores,J.M., Martinez,G., Gamba,G., Vazquez,N., Iglesias,D.J., Brumos,J. and Talon,M.	Identification and functional characterization of cation-chloride cotransporters in plants	Plant J.	50(2)	278-292	2007	_,CCC1	Os CCC2, OsCCC2, OsLAT8,Os CCC1, OsCCC1, OsLAT9 
22400	17142477	Martinez-Atienza,J., Jiang,X., Garciadeblas,B., Mendoza,I., Zhu,J.K., Pardo,J.M. and Quintero,F.J.	Conservation of the Salt Overly Sensitive Pathway in Rice 	Plant Physiol.	143(2)	1001-1012	2007	SOS1,SOS2,SOS3	OsSOS1, OsNHA1, NHA1, SOS1/NHX7, NHX7, OsNHX7,CIPK24, OsCIPK24, OsSOS2, OsSnRK3.22, SnRK3.22,CBL4, OsCBL4, OsSOS3
22402	17219210	Rakshit,S., Rakshit,A., Matsumura,H., Takahashi,Y., Hasegawa,Y., Ito,A., Ishii,T., Miyashita,N.T. and Terauchi,R.	Large-scale DNA polymorphism study of Oryza sativa and O. rufipogon reveals the origin and divergence of Asian rice	Theor. Appl. Genet.	114(4)	731-743	2007		
22403	17287810	Kurakawa,T., Ueda,N., Maekawa,M., Kobayashi,K., Kojima,M., Nagato,Y., Sakakibara,H., and Kyozuka,J.	Direct control of shoot meristem activity by a cytokinin-activating enzyme.	Nature	445(7128)	652-655	2007	LOG1	OsLOG1, LOG, Log, log, OsLOG
22503	15685364	Li,Y., Li,W. and Jin,Y.X.	Computational identification of novel family members of microRNA genes in Arabidopsis thaliana and Oryza sativa 	Acta Biochim. Biophys. Sin. (Shanghai)	37 (2)	75-87	2005	MIR166B,MIR160E,miR159B,MIR164F,MIR166N,MIR169B,MIR169C,MIR169D,MIR169J,MIR169K,MIR169M,MIR171I,MIR160F,miR159C,miR159D,MIR319B,MIR171D,MIR319A,MIR171F,miR159E,miR159F,MIR166L,MIR171E,MIR172C,MIR171C,MIR169F,MIR156G,MIR171B,MIR162B,MIR156L,MIR164D,MIR164E,MIR172A,MIR168A,MIR164C,MIR167F,MIR166H,MIR167G,MIR167I,MIR167J,MIR159A,MIR172D,MIR166M,MIR172B,MIR166G,MIR156K	miR166b, osa-miR166bosa-miR166b-3p osa-miR166b-5p, OsmiR166b,miR160e, osa-miR160e, osa-MIR160eosa-miR160e-5p,OsmiR159b, osa-MIR159b,miR164f, osa-miR164f,miR166n, osa-miR166n, osa-MIR166n, miR166j, osa-miR166j, osa-MIR166j, osa-miR166j-3p, osa-miR166j-5p,miR169b, osa-miR169b, osa-MIR169b,miR169c, osa-miR169c, osa-MIR169c,miR169d, osa-miR169d, osa-MIR169d,miR169j, osa-miR169j, osa-MIR169j,miR169k, osa-miR169k, osa-MIR169k,miR169m, osa-miR169m, osa-MIR169m,miR171i, osa-miR171iosa-miR171i-3p osa-miR171i-5p,miR160f, osa-miR160f, osa-MIR160f, osa-miR160f-3p osa-miR160f-5p,OsmiR159c, osa-MIR159c,OsmiR159d, osa-MIR159d,OsmiR319b, Osa-miR319b,miR171d, osa-miR171dosa-miR171d-3p osa-miR171d-5p,OsmiR319a, Osa-miR319a, osa-MIR319aosa-miR319a osa-miR319a-3p osa-miR319a-3p.2-3p,miR171f, osa-miR171f, osa-miR171f-3p osa-miR171f-5p,OsmiR159e, osa-MIR159e,OsmiR159f, osa-MIR159f,miR166l, osa-miR166losa-miR166l-3p osa-miR166l-5p,miR171e, osa-miR171e, osa-miR171e-3p, osa-miR171e-5p,OsmiR172c, miR172c, osa-MIR172c, Osa-miR172c ,miR171c, osa-miR171cosa-miR171c-3p osa-miR171c-5p,miR169f, osa-miR169f, osa-MIR169f, osa-miR169f.2,miR156g, OsmiR156g, osmiR156g, osa-miR156g, osa-MIR156gosa-miR156g-3p osa-miR156g-5p,miR171b, osa-miR171b,miR162b, osa-miR162b, osa-MIR162b ,miR156l, OsmiR156l, osmiR156l, osa-miR156l, osa-MIR156l, osa-miR156l-3p, osa-miR156l-5p,miR164d, osa-miR164d,miR164e, osa-MIR164e,OsmiR172a, miR172a, osa-MIR172a, Osa-miR172a ,miR168a, osa-miR168a, osa-MIR168a osa-miR168a-3p osa-miR168a-5p, OsMIR168a,miR164c, osa-miR164c,miR167f, osa-miR167f, osa-miRNA167f ,miR166h, osa-miR166hosa-miR166h-3p osa-miR166h-5p,miR167g, osa-miR167g, osa-miRNA167g ,miR167i, osa-miR167iosa-miR167i-3p osa-miR167i-5p,miR167j, osa-miR167j, osa-MIR167j,miR159a, osa-miR159a, osa-MIR159a, OsmiR159a, OsmiR159a.2, miR159a.2, OsmiR159a.1, miR159a.1, osa-miR159a.1, osa-miR159a.2,OsmiR172d, miR172d, osa-MIR172d osa-miR172d osa-miR172d-3p osa-miR172d-5p, Osa-miR172d,miR166m, osa-miR166m,OsmiR172b, miR172b, osa-MIR172b, Osa-miR172b ,miR166g, osa-miR166gosa-miR166g-3p osa-miR166g-5p,miR156k, OsmiR156k, osmiR156k, osa-miR156k, osa-MIR156k
22505	1368748	Murakami,K., Ishida,Y., Masaki,A., Tatsumi,H., Murakami,S., Nakano,E., Motai,H., Kawabe,H. and Arimura,H.	Isolation and characterization of the alkaline protease gene of Asp ergillus oryzae	Agric. Biol. Chem.	55(11)	2807-2811	1991		
22507	9726865	Christensen,T., Hynes,M.J. and Davis,M.A.	The Role of the areA Regulatory Gene of Aspergillus oryzae in Nitrogen Metabolism	Appl. Environ. Microbiol.	64(9)	3232-3237	1998		
22508	11526009	Kumeda,Y. and Asao,T.	Heteroduplex Panel Analysis, a Novel Method for Genetic Identification of Aspergillus Section Flavi Strains	Appl. Environ. Microbiol.	67(9)	4084-4090	2001		
22509	16597938	Ohtaki,S., Maeda,H., Takahashi,T., Yamagata,Y., Hasegawa,F., Gomi,K., Nakajima,T. and Abe,K.	Novel Hydrophobic Surface Binding Protein, HsbA, Produced by Aspergillus oryzae	Appl. Environ. Microbiol.	72(4)	2407-2413	2006		
22510	16391082	Tominaga,M., Lee,Y.H., Hayashi,R., Suzuki,Y., Yamada,O., Sakamoto,K., Gotoh,K. and Akita,O.	Molecular Analysis of an Inactive Aflatoxin Biosynthesis Gene Cluster in Aspergillus oryzae RIB Strains	Appl. Environ. Microbiol.	72(1)	484-490	2006		
22511	8597544	Lee,B.R., Kitamoto,K., Yamada,O. and Kumagai,C.	Cloning, characterization and overproduction of nuclease S1 gene (nucS) from Aspergillus oryzae	Appl. Microbiol. Biotechnol.	44(3-4)	425-431	1995		
22512	16673111	Lee,Y.H., Tominaga,M., Hayashi,R., Sakamoto,K., Yamada,O. and Akita,O.	Aspergillus oryzae strains with a large deletion of the aflatoxin biosynthetic homologous gene cluster differentiated by chromosomal breakage	Appl. Microbiol. Biotechnol.	72(2)	339-345	2006		
22514	16804680	Ibrahim,A.S., Skory,C.D. and Merten,J.A.	Plasmids for expression of heterologous proteins in Rhizopus oryzae 	Arch. Microbiol.	186(1)	41-50	2006		
22516	16380079	Higuchi,Y., Nakahama,T., Shoji,J.Y., Arioka,M. and Kitamoto,K.	Visualization of the endocytic pathway in the filamentous fungus Aspergillus oryzae using an EGFP-fused plasma membrane protein	Biochem. Biophys. Res. Commun.	340(3)	784-791	2006		
22518	16857172	Tatsumi,A., Kikuma,T., Arioka,M. and Kitamoto,K.	Aovps24, a homologue of VPS24, is required for vacuolar formation which could maintain proper growth and development in the filamentous fungus Aspergillus oryzae	Biochem. Biophys. Res. Commun.	347(4)	970-978	2006		
22523	16428831	Takahashi,T., Masuda,T. and Koyama,Y.	Identification and analysis of Ku70 and Ku80 homologs in the koji molds Aspergillus sojae and Aspergillus oryzae | Enhanced gene targeting frequency in ku70 and ku80 disruption mutants of Aspergillus sojae and Aspergillus oryzae	Biosci. Biotechnol. Biochem.	70(1)	135-143	2006		
22524	7763981	Gomi,K., Arikawa,K., Kamiya,N., Kitamoto,K. and Kumagai,C.	Cloning and nucleotide sequence of the acid protease-encoding gene (pepA) from Aspergillus oryzae	Biosci. Biotechnol. Biochem.	57(7)	1095-1100	1993		
22528	12951506	Abe,A., Sone,T., Sujaya,I.N., Saito,K., Oda,Y., Asano,K. and Tomita,F.	rDNA ITS Sequence of Rhizopus oryzae: Its Application to Classification and Identification of Lactic Acid Producers	Biosci. Biotechnol. Biochem.	67(8)	1725-1731	2003		
22532	16880596	Mabashi,Y., Kikuma,T., Maruyama,J., Arioka,M. and Kitamoto,K.	Development of a Versatile Expression Plasmid Construction System for Aspergillus oryzae and Its Application to Visualization of Mitochondria	Biosci. Biotechnol. Biochem.	70(8)	1882-1889	2006		
22533	17031057	Abe,A., Oda,Y., Asano,K. and Sone,T.	The Molecular Phylogeny of the Genus Rhizopus Based on rDNA Sequences	Biosci. Biotechnol. Biochem.	70(10)	2387-2393	2006		
22534	16495665	Akao,T., Yamaguchi,M., Yahara,A., Yushiuchi,K., Fujita,H., Yamada,O., Akita,O., Ohmachi,T., Asada,Y. and Yoshida,T.	Cloning and Expression of 1,2-alpha-Mannosidase Gene (fmanIB) fromFilamentous Fungus Aspergillus oryzae: in Vivo Visualization of the FmanIBp-GFP Fusion Protein	Biosci. Biotechnol. Biochem.	70(2)	471-479	2006		
22536	16699570	Hynes,S.S., Chaudhry,O., Providenti,M. and Smith,M.L.	Development of AFLP-derived, functionally specific markers for environmental persistence studies of fungal strains 	Can. J. Microbiol.	52(5)	451-461	2006		
22537	2688930	de Ruiter-Jacobs,Y.M., Broekhuijsen,M., Unkles,S.E., Campbell,E.I., Kinghorn,J.R., Contreras,R., Pouwels,P.H., van den Hondel,C.A.	A gene transfer system based on the homologous pyrG gene and efficient expression of bacterial genes in Aspergillus oryzae	Curr. Genet.	16(3)	159-163	1989		
22538	1913876	Ozeki,K., Kitamoto,K., Gomi,K., Kumagai,C., Tamura,G. and Hara,S.	Cloning and nucleotide sequence of the genomic ribonuclease T2 gene (rntB) from Aspergillus oryzae	Curr. Genet.	19(5)	367-373	1991		
22539	8252646	Morton,B.R. and Clegg,M.T.	A chloroplast DNA mutational hotspot and gene conversion in a noncoding region near rbcL in the grass family (Poaceae)	Curr. Genet.	24(4),	357-365	1993	RBCL,RPL23.P,_	rbcL, rbcA, OsrbcL,rpl23.p,psaI, ORF36
22540	7788722	Nakazono,M., Itadani,H., Wakasugi,T., Tsutsumi,N., Sugiura,M. and Hirai,A.	The rps3-rpl16-nad3-rps12 gene cluster in rice mitochondrial DNA is transcribed from alternative promoters.	Curr. Genet.	27(1)	184-189	1995	RPS12,NAD3,RPL16,RPS3	rps12,nad3,rpl16, pseudo-rpl16,rps3
22546	8988367	Hanzawa,M., Anai,T., Umeda,M. and Uchimiya,H.	Novel DNA probes capable of discriminating indica and japonica rice cultivars	DNA Seq.	6	303-306	1996		
22547		Sugiura,M., Baev,A.A., Dzhumagaliev,E.B., Lyubomirskaya,N.V., Mizrokhi,L.Y., Il'in,Y.V., Itadani,H., Wakasugi,T., Sugita,M., Sugiura,M., Nakazono,M., Hirai,A., Nakazono,M., Itadani,H., Wakasugi,T., Tsutsumi,N., Sugiura,M., Hirai,A.	Structure of long and short copies of the mobile dispersed gene MDG3 of Drosophila melanogaster	Dokl. Akad. Nauk. SSSR	282	1483-1486	1985		
22550	16896216	Kikuma,T., Ohneda,M., Arioka,M. and Kitamoto,K.	Functional Analysis of the ATG8 Homologue Aoatg8 and Role of Autophagy in Differentiation and Germination in Aspergillus oryzae	Eukaryotic Cell	5(8)	1328-1336	2006		
22551	16467481	Shoji,J., Arioka,M. and Kitamoto,K.	Vacuolar Membrane Dynamics in the Filamentous Fungus Aspergillus oryzae	Eukaryotic Cell	5(2)	411-421	2006		
22557	17116242	Jain,M., Tyagi,A.K. and Khurana,J.P.	Overexpression of putative topoisomerase 6 genes from rice confers stress tolerance in transgenic Arabidopsis plants	FEBS J.	273(23)	5245-5260	2006	TOP6A1,TOP6A3,TOP6B,TOP6A2	OsTOP6A1, OsSPO11-1, OsSPO11A, SPO11-1,OsTOP6A3, OsSPO11-3, OsSPO11C,OsTOP6B, OsSPO11-6B,OsTOP6A2, OsSpo11-2, OsSPO11-2, OsSPO11B, SPO11-2
22561	15327973	Wei,D., Li,M., Zhang,X., Ren,Y. and Xing,L.	Identification and characterization of a novel delta12-fatty acid desaturase gene from Rhizopus arrhizus 	FEBS Lett.	573 (1-3)	45-50	2004		
22563	17233721	Kihara,J., Moriwaki,A., Tanaka,N., Ueno,M. and Arase,S.	Characterization of BLR1 gene encoding a putative blue-light regulator in the phytopathogenic fungus Bipolaris oryzae	FEMS Microbiol. Lett.	266(1)	110-118	2007		
22564	8359678	Kitamoto,N., Kimura,T., Kito,Y., Ohmiya,K. and Tsukagoshi,N.	Structural features of a polygalacturonase gene cloned from Aspergillus oryzae KBN616	FEMS Microbiol. Lett.	111(1)	37-42	1993		
22565	16553861	Moriwaki,A., Kubo,E., Arase,S. and Kihara,J.	Disruption of SRM1, a mitogen-activated protein kinase gene, affects sensitivity to osmotic and ultraviolet stressors in the phytopathogenic fungus Bipolaris oryzae	FEMS Microbiol. Lett.	257(2)	253-261	2006		
22566	16842350	Salah,R.B., Mosbah,H., Fendri,A., Gargouri,A., Gargouri,Y. and Mejdoub,H.	Biochemical and molecular characterization of a lipase produced by Rhizopus oryzae 	FEMS Microbiol. Lett.	260(2)	241-248	2006		
22567	16531081	Montiel,M.D., Lee,H.A. and Archer,D.B.	Evidence of RIP (repeat-induced point mutation) in transposase sequences of Aspergillus oryzae 	Fungal Genet. Biol.	43(6)	439-445	2006		
22569	7557464	Friedberg,D., Peleg,Y., Monsonego,A., Maissi,S., Battat,E., Rokem,J.S. and Goldberg,I.	The fumR gene encoding fumarase in the filamentous fungus Rhizopus oryzae: cloning, structure and expression	Gene	163(1)	139-144	1995		
22571	11404008	Voigt,K. and Woestemeyer,J.	Phylogeny and origin of 82 zygomycetes from all 54 genera of the Mucorales and Mortierellales based on combined analysis of actin and translation elongation factor EF-1alpha genes.	Gene	270(1-2)	113-120	2001		
22572	15094197	Zhou,G., Wang,J., Zhang,Y., Zhong,C., Ni,J., Wang,L., Guo,J., Zhang,K., Yu,L. and Zhao,S.	Cloning, expression and subcellular localization of HN1 and HN1L genes, as well as characterization of their orthologs, defining an evolutionarily conserved gene family 	Gene	331	115-123	2004	_	HN1L
22573	15556301	Masood,M.S., Nishikawa,T., Fukuoka,S., Njenga,P.K., Tsudzuki,T. and Kadowaki,K.	The complete nucleotide sequence of wild rice (Oryza nivara) chloroplast genome: first genome wide comparative sequence analysis of wild and cultivated rice	Gene	340(1)	133-139	2004	RBCL,_,RPS8,RPS7,YCF3,_,RPOA,_,RPS14,_,RPOC1,16S  rRNA,PSAC,_,PSBA,_,RPS18,_,RPS11,_,RPL2,_,RPS4,_,PSBI,_,_,_,_,_,_,_,_,_,_,PSBN,RPL36,_,_,_,_,RPS3,_,_,_,_,_,_,_,_,_,_,_,_,_,23S  rRNA,_,_,_,_,_,_,_,23S  rRNA,_,_,16S  rRNA,_,_,_,_,_,_,_,_,_,RPL23,_,PSBK,_,_,_,_,CLPP,RPS7,_,NDHJ,NDHB,_,YCF4,RPL22,PSBL,PSBF,PSBE,_,_,INFA,_,RPL33,_,NDHC,_,NDHF,_,NDHE,NDHG,NDHK,NDHI,NDHH,_,4.5S  rRNA,5S  rRNA,5S  rRNA,4.5S  rRNA,_,PSBM,_,_,PSBZ,_,RPL23,RPS19,_,_,PETE,_,NDHB,RPS15,_,PSBH,RPS12,PETD,PETB,_,RPS16,NDHA,ATPF,RPS2,_,RPL14,_,PETA,NDHD,_,RPL2,PSBB,PSBC,RPOC2,RPS19,_,_,RPL32,_,_,_,_,_,RPS15,3'RPS12,_,RPL16,PSAB,RPOB,PSBD,PSAA	rbcL, rbcA, OsrbcL,ORF40, psbJ,rps8,rps7,ORF170, ycf3, IRF170, ycf3-1, ycf3-2,trnS(GCU), trnS, trnS-GCU,rope, rpoalpha, Rpoalpha, rope, RpoA ,trnQ(UUG), trnQ, trnQ-UUG,rps14 ,trnS(UGA), trnS, trnS-UGA,rpoC1, RPO beta', RPObeta', OsRPOC1,rrn16,psaC, OsPSAC,trnfM(CAU), trnfM, trnfM-CAU,PsbA, psbA, OsPsbA, PSBD1, OsPSBD1, psbD1,trnT(GGU), trnT, trnT-GGU,rps18,trnG(UCC), trnG, trnG-UCC,rps11,trnY(GUA), trnY, tmY-GUA,rpl2,trnD(GUC), trnD, trnD-GUC,rps4 ,trnI(CAU), trnI, trnI-CAU,psbI,trnC, trnC(GCA), trnC-GCA,ORF137,trnR(UCU), trnR, trnR-UCU,ORF72,trnS(GGA), trnS, trnS-GGA,trnT(UGU), trnT, trnT-UGU,trnM, trnM(CAU), trnM-CAU,ORF85,trnW(CCA), trnW, trnW-CCA,trnP(UGG), trnP, trnP-UGG,psbN, PsbN,rpl36,trnH(GUG), trnH, trnH-GUG,ORF23,trnK(UUU), trnK, trnK-UUU,trnV, trnV(UAC), trnV-UAC,rps3,trnF(GAA), trnF, trnF-GAA,ORF249,orf34,orf46,ORF109,orf39,ORF28,ORF109,trnV, trnV(GAC), trnV-GAC,trnI(GAU), trnI, trnI-GAU,ORF63,trnA(UGC), trnA, trnA-UGC,ORF133,rrn23,trnR(ACG), trnR, trnR-ACG,trnN(GUU), trnN, trnN-GUU,orf39,trnL(UAG), trnL, trnL-UAG,ORF133, ycf68,trnN(GUU), trnN, trnN-GUU,trnR(ACG), trnR, trnR-ACG,rrn23,trnI(GAU), trnI, trnI-GAU,ORF85,rrn16,trnV, trnV(GAC), trnV-GAC,ORF249,trnL(CAA), trnL, trnL-CAA,ORF28,orf48,orf34,orf46,ORF91,trnL(CAA), trnL, trnL-CAA, L-CAA,rpl23,ORF85,psbK,ORF63,ORF70,ORF29, petN,ORF72,ORF216, ClpP, clpP,rps7,ORF230, cemA,ORF159, ndhJ,ndhB,psaI, ORF36,Ycf4, ORF185,rpl22,psbL,psbF,psbE,ORF31, petL,rpl20,infA,atpH,rpl33,ORF133, ycf68,ndhC,ORF56, ndhH,ndhF,ORF321, ccsA,ndhE,ndhG,psbG, ndhK,ORF178, ndhI,ORF393, ndhH,ORF82,rrn4.5,rrn5,rrn5,rrn4.5,ORF64,psbM,trnH(GUG), trnH, trnH-GUG,trnI(CAU), trnI, trnI-CAU,psbZ, lhbA, ORF62,ORF82,rpl23,rps19,trnA(UGC), trnA, trnA-UGC,orf64,petE, petG,atpI,ndhB, NDH2, NADH2,rps15,matK, ORF542 ,psbH, psbF ,rps12,petD, OsPETD,petB, OsPETB,trnL(UAA), trnL, trnL-UAA,rps16,ndhA,atpF, OsatpF,rps2,atpA,rpl14,atpE,petA, Cytf, cytF, Cyt f, OsPETA,ndhD, NdhD, NDH4, NADH4,ORF137,rpl2,psbB, OsPSBB,psbC, cp43, OsPSBC, OsCP43,rpoC2, RPO beta", RPObeta",rps19,ORF44, psaJ,ORF35, psbT,rpl32, ORF63,trnG(GCC), trnG, trnG-GCC, trnG-UCC,trnG(GCC).p, trnG.p,trnT(GGU).p, trnT.p,trnE(UUC), trnE, trnE-UUC,ORF23,rps15,3'rps12, 3'-rps12, rps12,atpB, AtpB, atpcf1, ATPbeta,rpl16,PsaB, psaB, PsAA2, psaA2,rpoB, RpoB, Rpobeta,psbD, D2, OsPsbD1, OsPsbD2,PsaA, psaA, PsAA1, psaA1
22577	16172529	Xu,J.-H., Osawa,I., Tsuchimoto,S., Ohtsubo,E. and Ohtsubo,H.	Two new SINE elements, p-SINE2 and p-SINE3, from rice	Genes Genet. Syst.	80(3)	161-171	2005	_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_	p-SINE2-r24,p-SINE2-r2001,p-SINE2-r2002,p-SINE2-r2003,p-SINE2-r2004,p-SINE2-r2005,p-SINE2-r2006,p-SINE2-r2007,p-SINE2-r2009,p-SINE2-r2010,p-SINE2-r2012,p-SINE2-r2013,p-SINE2-r2014,p-SINE2-r2015,p-SINE2-r2016,p-SINE2-r2017,p-SINE2-r2018,p-SINE3-r3001,p-SINE3-r3002,p-SINE3-r3003,p-SINE3-r3004,p-SINE3-r3005,p-SINE3-r3006,p-SINE3-r3007,p-SINE3-r3008,p-SINE3-r3009,p-SINE3-r3010,p-SINE3-r3011,p-SINE3-r3012,p-SINE3-r3013,p-SINE3-r3014,p-SINE3-r3015,p-SINE3-r3016A,p-SINE3-r3016B,p-SINE3-r3017,p-SINE3-r3018,p-SINE3-r3019,p-SINE3-r3020,p-SINE3-r3021,p-SINE3-r3022,p-SINE3-r3023,p-SINE3-r3024
22583	10925785	Han,C., Frank,M.J., Ohtsubo,H., Ohtsubo,E.	New transposable elements identified as insertions in rice transposon Tnr1	Genes Genet. Syst.	75(2)	69-77	2000	TNR1,TNR4,TNR5,TNR11,TNR12,TNR13,_	Tnr1,Tnr4,Tnr5,Tnr11,Tnr12,Tnr13,RIRE9
22584	12441643	Cheng,C., Tsuchimoto,S., Ohtsubo,H. and Ohtsubo,E.	Evolutionary relationships among rice species with AA genome based on SINE insertion analysis	Genes Genet. Syst.	77(5)	323-334	2002	_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_	p-SINE1-r217,p-SINE1-r601,p-SINE1-r605,p-SINE1-r606,p-SINE1-r607,p-SINE1-r701,p-SINE1-r702,p-SINE1-r703,p-SINE1-r705,p-SINE1-r706,p-SINE1-r707,p-SINE1-r708,p-SINE1-r709,p-SINE1-r801,p-SINE1-r803,p-SINE1-r804,p-SINE1-r806,p-SINE1-r807,p-SINE1-r808,p-SINE1-r901,p-SINE1-r902,p-SINE1-r903,p-SINE1-r904,p-SINE1-r905,p-SINE1-r906,p-SINE1-r907,p-SINE1-r908,p-SINE1-r29,p-SINE1-r32,p-SINE1-r46,p-SINE1-r509,p-SINE1-r63,p-SINE1-r68,p-SINE1-r70,p-SINE1-r72,p-SINE1-r69,p-SINE1-r34,p-SINE1-r55,p-SINE1-r1, p-SINE1-r1* ,p-SINE1-r502
22585	16172525	Xu,J.-H., Kurata,N., Akimoto,M., Ohtsubo,H. and Ohtsubo,E.	Identification and characterization of Australian wild rice strains of Oryza meridionalis and Oryza rufipogon by SINE insertion polymorphism	Genes Genet. Syst.	80(2)	129-134	2005	_,_	p-SINE1-r461,p-SINE1-r502
22587	16547098	Olsen,K.M., Caicedo,A.L., Polato,N., McClung,A., McCouch,S.R. and Purugganan,M.D.	Selection under Domestication: Evidence for a Sweep in the Rice Waxy Genomic Region 	Genetics	173(2)	975-983	2006	WX1	wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx
22590	16430983	Chang,P.-K., Ehrlich,K.C. and Hua,S.-S.T.	Cladal relatedness among Aspergillus oryzae isolates and Aspergillus flavus S and L morphotype isolates 	Int. J. Food Microbiol.	108(2)	172-177	2006		
22592	16310740	Suzuki,T., Tran,L.H., Yogo,M., Idota,O., Kitamoto,N., Kawai,K. and Takamizawa,K.	Cloning and Expression of NAD+-Dependent L-Arabinitol 4-Dehydrogenase Gene (ladA) of Aspergillus oryzae 	J. Biosci. Bioeng.	100(4)	472-474	2005		
22593	17189178	Feng,B., Morita,M., Imanaka,H., Imamura,K. and Nakanishi,K.	Identification of Genes from Aspergillus oryzae That Are Preferentially Expressed in Membrane-Surface Liquid Culture 	J. Biosci. Bioeng.	102(5)	470-473	2006		
22594	16233536	Ito,T., Yokoyama,E., Sato,H., Ujita,M., Funaguma,T., Furukawa,K. and Hara,A.	Xylosidases Associated with the Cell Surface of Penicillium herquei IFO 4674	J. Biosci. Bioeng.	96(4)	354-359	2003		
22595	16233653	Tran,H.L., Kitamoto,N., Kawai,K., Takamizawa,K. and Suzuki,T.	 Cloning and Expression of a NAD+-Dependent Xylitol Dehydrogenase Gene (xdhA) of Aspergillus oryzae	J. Biosci. Bioeng.	97(6)	419-422	2004		
22596	16129506	Koseki,T., Miwa,Y., Akao,T., Akita,O. and Hashizume,K.	An Aspergillus oryzae acetyl xylan esterase: Molecular cloning and characteristics of recombinant enzyme expressed in Pichia pastoris	J. Biotechnol.	121(3)	381-389	2006		
22598	16455881	Schwarz,P., Bretagne,S., Gantier,J.C., Garcia-Hermoso,D., Lortholary,O., Dromer,F. and Dannaoui,E.	Molecular identification of zygomycetes from culture and experimentally infected tissues 	J. Clin. Microbiol.	44(2)	340-349	2006		
22599		Nakase,T., Takematsu,A. and Yamada,Y.	Molecular approaches to the taxonomy of ballistosporous yeasts based on the analysis of the partial nucleotide sequences of 18S ribosomal ribonucleic acids	J. Gen. Appl. Microbiol.	39(2)	107-134	1993		
22600		Liu,D., Gong,W., Bai,Y., Luo J. and Zhu,Y.	OsHT, a Rice Gene Encoding for a Plasma-Membrane Localized HistidineTransporter	J. Integr. Plant Biol.	47(1)	92-99	2005	HT	OsHT, OsLHT1, LHT1
22602	17086451	Watkins,R.F., Gray,M.W., Lang,B.F., Burger,G.	The Frequency of Eubacterium-to-Eukaryote Lateral Gene Transfers Shows Significant Cross-Taxa Variation Within Amoebozoa 	J. Mol. Evol.	63(6)	801-814	2006		
22607	1910873	Ohtsubo,H., Umeda,M. and Ohtsubo,E.	Organization of DNA sequences highly repeated in tandem in rice genomes	Jpn. J. Genet.	66(3)	241-254	1991		
22609	16385126	Lee,C.-Z., Liou,G.-Y. and Yuan,G.-F.	Comparison of the aflR gene sequences of strains in Aspergillus section Flavi 	Microbiology (Reading, Engl.)	152 (PT 1)	161-170	2006		
22610	10028288	Matsuoka,Y. and Tsunewaki,K.	Evolutionary dynamics of Ty1-copia group retrotransposons in grass shown by reverse transcriptase domain analysis	Mol. Biol. Evol.	16(2)	208-217	1999	_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_	Ros1,Ros2,Ros3,Ros4,Ros5,Ros6,Ros7,Ros8,Ros10,Ros11,Ros9,Ros13,Ros12,Ros14,Ros15,Ros16,Ros17,Ros18,Ros19,Ros20,Ros21,Ros22,Ros23
22611	12519908	Cheng,C., Motohashi,R., Tsuchimoto,S., Fukuta,Y., Ohtsubo,H. and Ohtsubo,E.	Polyphyletic Origin of Cultivated Rice: Based on the Interspersion Pattern of SINEs	Mol. Biol. Evol.	20(1)	67-75	2003	_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_	p-SINE1-r69,p-SINE1-r25,p-SINE1-r216,p-SINE1-r29,p-SINE1-r32,p-SINE1-r58,p-SINE1-r46,p-SINE1-r50,p-SINE1-r504,p-SINE1-r505,p-SINE1-r509,p-SINE1-r52,p-SINE1-r54,p-SINE1-r56,p-SINE1-r59,p-SINE1-r63,p-SINE1-r68,p-SINE1-r34,p-SINE1-r70,p-SINE1-r72,p-SINE1-r64,p-SINE1-r66,p-SINE1-r65,p-SINE1-r2,p-SINE1-r210,p-SINE1-r30,p-SINE1-r51,p-SINE1-r53,p-SINE1-r57,p-SINE1-r62,p-SINE1-r215,p-SINE1-r506,p-SINE1-r507,p-SINE1-r6,p-SINE1-r55,p-SINE1-r60,p-SINE1-r61,p-SINE1-r501,p-SINE1-r503,p-SINE1-r1, p-SINE1-r1* ,p-SINE1-r502
22614	16382184	Niu,W.N., Li,Z.P. and Tan,T.	Secretion of pro- and mature Rhizopus arrhizus lipases by Pichia pastoris and properties of the proteins 	Mol Biotechnol	32 (1)	73-81	2006		
22617	2770692	Hiratsuka,J., Shimada,H., Whittier,R., Ishibashi,T., Sakamoto,M., Mori,M., Kondo,C., Honji,Y., Sun,C.R. and Meng,B.Y.	The complete sequence of the rice (Oryza sativa) chloroplast genome: intermolecular recombination between distinct tRNA genes accounts for a major plastid DNA inversion during the evolution of cereals	Mol. Gen. Genet.	217(2-3)	185-194	1989	PSAA,_,RPS14,_,PSBA,_,RPOC1,_,_,CLPP,PSAB,_,RPS18,_,PSBC,5S  rRNA,RPOC2,_,RPS4,5S  rRNA,23S  rRNA,_,_,_,RPS7,NDHC,_,NDHK,_,_,_,_,_,NDHB,_,_,_,_,_,_,NDHI,PSBI,_,NDHH,_,_,PSBL,_,_,_,PSBE,_,RPL33,_,_,INFA,16S  rRNA,RPL36,_,NDHF,_,_,_,_,_,_,PSAC,_,RPS16,_,RPS2,RPS3,PSBH,RPS11,PSBD,3'RPS12,_,PETE,NDHB,RPL23,_,RPS7,_,PSBN,_,_,4.5S  rRNA,RPL22,_,_,YCF4,_,NDHG,_,_,_,_,_,_,16S  rRNA,_,_,RPL32,4.5S  rRNA,23S  rRNA,_,_,RPS19,_,_,_,_,PSBM,RPL23,PSBF,_,_,_,_,NDHJ,RPS15,RPS15,_,_,_,_,_,_,PSBK,_,YCF3,PSBB,RPS12,PETD,NDHA,ATPF,_,RPL16,PETA,NDHD,RPL2,RPS8,RPL14,_,NDHE,RPL2,PETB,RPOA,_,_,_,RBCL,_,_,_,_,PSBZ,_,_,_,RPOB,_	PsaA, psaA, PsAA1, psaA1,trnI.p,rps14 ,ORF133,PsbA, psbA, OsPsbA, PSBD1, OsPSBD1, psbD1,ORF321, ccsA,rpoC1, RPO beta', RPObeta', OsRPOC1,trnI(CAU), trnI, trnI-CAU,trnL(UAA), trnL, trnL-UAA,ORF216, ClpP, clpP,PsaB, psaB, PsAA2, psaA2,trnI(GAU), trnI, trnI-GAU,rps18,trnV, trnV(GAC), trnV-GAC,psbC, cp43, OsPSBC, OsCP43,rrn5,rpoC2, RPO beta", RPObeta",trnI(GAU), trnI, trnI-GAU,rps4 ,rrn5,rrn23,trnR(ACG), trnR, trnR-ACG,trnG(GCC), trnG, trnG-GCC, trnG-UCC,trnL(CAA), trnL, trnL-CAA,rps7,ndhC,ORF31, petL,psbG, ndhK,ORF42,trnL(UAG), trnL, trnL-UAG,trnH(GUG), trnH, trnH-GUG,rpl20,ORF137,ndhB,ORF133, ycf68,ORF72,ORF63,ORF28,ORF137,ORF85,ORF178, ndhI,psbI,ORF63,ORF393, ndhH,ORF82,ORF133, ycf68,psbL,trnS(UGA), trnS, trnS-UGA,ORF91,trnQ(UUG), trnQ, trnQ-UUG,psbE,ORF82,rpl33,ORF23,ORF249,infA,rrn16,rpl36,ORF40, psbJ,ndhF,ORF100,trnN(GUU), trnN, trnN-GUU,trnS(GCU), trnS, trnS-GCU,trnG(GCC).p, trnG.p,trnT(UGU), trnT, trnT-UGU,ORF28,psaC, OsPSAC,trnA(UGC), trnA, trnA-UGC,rps16,trnK(UUU), trnK, trnK-UUU,rps2,rps3,psbH, psbF ,rps11,psbD, D2, OsPsbD1, OsPsbD2,3'rps12, 3'-rps12, rps12,atpI,petE, petG,ndhB, NDH2, NADH2,rpl23,ORF106, accD,rps7,ORF85,psbN, PsbN,ORF29, petN,ORF70,rrn4.5,rpl22,trnR(UCU), trnR, trnR-UCU,psaI, ORF36,Ycf4, ORF185,ORF35, psbT,ndhG,atpH,trnV, trnV(GAC), trnV-GAC,trnA(UGC), trnA, trnA-UGC,ORF56, ndhH,ORF72,trnR(ACG), trnR, trnR-ACG,rrn16,ORF249,trnH(GUG), trnH, trnH-GUG,rpl32, ORF63,rrn4.5,rrn23,ORF230, cemA,trnS(GGA), trnS, trnS-GGA,rps19,ORF85,trnY(GUA), trnY, tmY-GUA,trnI(CAU), trnI, trnI-CAU,ORF23,psbM,rpl23,psbF,ORF44, psaJ,trnG(UCC), trnG, trnG-UCC,trnT(GGU), trnT, trnT-GGU,trnfM(CAU), trnfM, trnfM-CAU,ORF159, ndhJ,rps15,rps15,trnD(GUC), trnD, trnD-GUC,trnP(UGG), trnP, trnP-UGG,trnT(GGU).p, trnT.p,trnN(GUU), trnN, trnN-GUU,trnL(CAA), trnL, trnL-CAA, L-CAA,trnM, trnM(CAU), trnM-CAU,psbK,trnW(CCA), trnW, trnW-CCA,ORF170, ycf3, IRF170, ycf3-1, ycf3-2,psbB, OsPSBB,rps12,petD, OsPETD,ndhA,atpF, OsatpF,trnV, trnV(UAC), trnV-UAC,rpl16,petA, Cytf, cytF, Cyt f, OsPETA,ndhD, NdhD, NDH4, NADH4,rpl2,rps8,rpl14,trnC, trnC(GCA), trnC-GCA,ndhE,rpl2,petB, OsPETB,rope, rpoalpha, Rpoalpha, rope, RpoA ,atpA,atpE,atpB, AtpB, atpcf1, ATPbeta,rbcL, rbcA, OsrbcL,ORF109,trnE(UUC), trnE, trnE-UUC,ORF64,ORF64,psbZ, lhbA, ORF62,ORF109,rps19,matK, ORF542 ,rpoB, RpoB, Rpobeta,trnF(GAA), trnF, trnF-GAA
22621	7808394	Ohtsubo,H. and Ohtsubo,E.	Involvement of transposition in dispersion of tandem repeat sequences (TrsA) in rice genomes	Mol. Gen. Genet.	245(4)	449-455	1994		
22622	8628213	Motohashi,R., Ohtsubo,H. and Ohtsubo,E.	Identification of Tnr3, a Suppressor-Mutator/Enhancer-like transposable element from rice	Mol. Gen. Genet.	250(2)	148-152	1996	TRN3	Tnr3
22625	10071212	Noma,K., Ohtsubo,E. and Ohtsubo,H.	Non-LTR retrotransposons (LINEs) as ubiquitous components of plant genomes	Mol. Gen. Genet.	261(1)	71-79	1999	_,_,_,_,_,_,_,_,_,_,_,_,_,_	RILN1,RILN2,RILN4,RILN3,RILN5,RILN6,RILN7,RILN8,RILN9,RILN10,RILN11,RILN12,RILN13,RILN14
22626	11212914	Carrillo,C., Chapdelaine,Y. and Bonen,L.	Variation in sequence and RNA editing within core domains of mitochondrial group II introns among plants	Mol. Gen. Genet.	264(5)	595-603	2001	NAD1,NAD7	nad1, Osnad1, nadI, nadIB,nad7
22627	16470383	Takahashi,T., Masuda,T. and Koyama,Y.	Enhanced gene targeting frequency in ku70 and ku80 disruption mutants of Aspergillus sojae and Aspergillus oryzae	Molecular Genetics & Genomics (Molecular General Genetics up to 2001)	275(5)	460-470	2006		
22629	12471441	Notsu,Y., Masood,S., Nishikawa,T., Kubo,N., Akiduki,G., Nakazono,M., Hirai,A. and Kadowaki,K.	The complete sequence of the rice (Oryza sativa L.) mitochondrial genome: frequent DNA sequence acquisition and loss during the evolution of flowering plants	Molecular Genetics & Genomics (Molecular General Genetics up to 2001)	268(4)	434-445	2002	_,NAD7,_,NAD1,_,_,5S  rRNA,_,_,_,_,_,_,_,_,_,RPL16,RPS12,RPS3,18S  rRNA,NAD4L,_,26S  rRNA,_,RPS7,_,_,RPS19,_,RPS11.P,_,_,_,RPS13,_,_,_,_,_,_,_,RPS7,_,_,_,_,_,_,_,RPS1,_,_,_,_,_,_,NAD9,_,_,RPL2,_,_,GSLm,_,_,RPS2,_,_,_,CCMC,ORFX,NAD5,NAD2,NAD6,RPS4,_,_,_,_,NAD4	cox2, coxII,nad7,trnP(TGG), trnP,nad1, Osnad1, nadI, nadIB,trnS(GCT), trnS,trnM(CAT), trnM,rrn5,trnH(GTG), trnH,trnS(TGA), trnS,trnM(CAT), trnM,trnW(CCA), trnW,trnP(TGG), trnP,trnQ(TTG), trnQ,trnI(CAT), trnI,trnD(GTC), trnD,trnK(TTT), trnK,rpl16, pseudo-rpl16,rps12,rps3,rrn18,nad4L,trnY(GTA), trnY,rrn26,trnR(TCT), trnR,rps7,orf490,orf224, orf224a, orf224b,rps19,orf160, orf160b ,rps11.p, pseudo-rps11 ,trnV.p, pseudo-trnV, trnV,trnfM(CAT), trnfM,trnI, pseudo-trnI,rps13,orf176, orf173 ,trnE(TTC), trnE,trnC(GCA), trnC,trnS(GGA), trnS,trnF(GAA), trnF,orf162, orf162-1,orf152a, orf152b,rps7,orf258, orf317,orf181,orf183,orf288, LD-orf310,orf153,orf152b, orf152b-1, orf152,orf187, orf187-1,rps1, rps1a, rps1b, rps1-1,orf284, orf284-1,orf165, orf165-1,rps14, rps14.p, pseudo-rps14,rpl5, rpl5-1,orf173, orf173-1, orf173b,ccmB,nad9, nad9-1, CI-27kD, CI-27KD,orf25, atp4,orf194,rpl2,orf161,mat-r, mat-r-1,orf241, OsGSLm, OsGSLmt, GSLmt,ccmFc, ccmFc-1,orfB, atp8 ,rps2, orf483 ,ccmFn, ccmFn-1,atp9, RMtATP9, aatp9,atp1, atp1-1, ATP1,ccmC, orf240,orfX,nad5, OsNAD5,nad2, OsNAD2,nad6,rps4,cob, cob-1, cob-like, cyt c,coxI, COX1, cox1-1, cox1,cox3, coxIII, cox3a, cox3b, cox3c,atp6, N-atp6, B-ATP6, B-atp6, atp6-1,nad4, nadIV
22633	16463049	Bao,W., Zhang,W., Yang,Q., Zhang,Y., Han,B., Gu,M., Xue,Y. and Cheng,Z.	Diversity of centromeric repeats in two closely related wild rice species, Oryza officinalis and Oryza rhizomatis 	Molecular Genetics & Genomics (Molecular General Genetics up to 2001)	275 (5)	421-430	2006		
22634	2785629	Wirsel,S., Wirsel,S., Lachmund,A., Wildhardt,G., Ruttkowski,E.	Three alpha amylase genes of aspergillus oryzae exhibit identical intron-exon organisation	Mol. Microbiol.	3(1)	3-14	1989		
22635	16781873	Frealle,E., Noel,C., Nolard,N., Symoens,F., Felipe,M.S., Dei-Cas,E., Camus,D., Viscogliosi,E. and Delhaes,L.	Manganese superoxide dismutase based phylogeny of pathogenic fungi 	Mol. Phylogenet. Evol.	41(1)	28-39	2006		
22638	16941905	Zellerhoff,N., Jarosch,B., Groenewald,J.Z., Crous,P.W. and Schaffrath,U.	Nonhost resistance of barley is successfully manifested against Magnaporthe grisea and a closely related Pennisetum-infecting lineage but is overcome by Magnaporthe oryzae 	Mol. Plant Microbe Interact.	19 (9)	1014-1022	2006		
22639	17015001	Tuckwell,D., Lavens,S.E. and Birch,M.	Two families of extracellular phospholipase C genes are present in aspergilli 	Mycol. Res.	110 (PT 10)	1140-1151	2006		
22640	16378718	Cai,L., Jeewon,R. and Hyde,K.D.	Phylogenetic investigations of Sordariaceae based on multiple gene sequences and morphology 	Mycol. Res.	110 (PT 2)	137-150	2006		
22641		Ogawa,Y., Tokumasu,S. and Tubaki,K.	An original habitat of tempeh molds	Mycoscience	45	271-276	2004		
22645	12520302	Jiang,N., Bao,Z., Zhang,X., Hirochika,H., Eddy,S.R., McCouch,S.R. and Wessler,S.R.	An active DNA transposon family in rice 	Nature	421 (6919)	163-167	2003	PONG,PING,_,_,MPING	Pong,Ping,A,B,mPing
22648	6093039	Kao,T., Moon,E. and Wu,R.	Cytochrome oxidase subunit II gene of rice has an insertion sequence within the intron	Nucleic Acids Res.	12(19)	7305-7315	1984	_	COII, coxII
22653	1708498	Shimada,H. and Sugiura,M.	 Fine structural features of the chloroplast genome: comparison of the sequenced chloroplast genomes 	Nucleic Acids Res.	19(5)	983-995	1991	_,NDHE,PSBA,NDHB,NDHA,NDHJ,RPL16,PSBF,PSAA,PSBE,RPS4,CLPP,PETB,NDHC,_,NDHF,RPL2,4.5S  rRNA,RPOC1,23S  rRNA,_,5S  rRNA,RPS8,4.5S  rRNA,_,NDHI,RPOB,NDHH,RPS11,16S  rRNA,_,23S  rRNA,PSAC,NDHG,16S  rRNA,RPL36,PSBK,PSBI,RPL33,RPS19,PSBL,PSBN,PSBM,_,_,_,_,_,_,_,_,_,_,_,_,NDHB,RPS15,RPS15,_,_,_,_,_,_,_,_,RPS16,PETD,RPS2,RPS3,PSBH,RPS14,PSAB,RPS18,PETA,PSBD,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,RPL23,_,_,_,_,_,_,_,_,_,_,RPS7,_,_,_,_,_,_,INFA,_,RPS7,_,_,_,_,RPL22,_,_,_,_,_,_,5S  rRNA,_,_,RPL23,_,_,_,PSBC,RPL14,YCF3,RPOA,RBCL,NDHD,3'RPS12,_,RPL32,_,_,_,_,RPS12,ATPF,PSBB,_,RPOC2,RPL2,_	atpB, AtpB, atpcf1, ATPbeta,ndhE,PsbA, psbA, OsPsbA, PSBD1, OsPSBD1, psbD1,ndhB,ndhA,ORF159, ndhJ,rpl16,psbF,PsaA, psaA, PsAA1, psaA1,psbE,rps4 ,ORF216, ClpP, clpP,petB, OsPETB,ndhC,atpA,ndhF,rpl2,rrn4.5,rpoC1, RPO beta', RPObeta', OsRPOC1,rrn23,trnK(UUU), trnK, trnK-UUU,rrn5,rps8,rrn4.5,trnL(UAA), trnL, trnL-UAA,ORF178, ndhI,rpoB, RpoB, Rpobeta,ORF393, ndhH,rps11,rrn16,trnV, trnV(UAC), trnV-UAC,rrn23,psaC, OsPSAC,ndhG,rrn16,rpl36,psbK,psbI,rpl33,rps19,psbL,psbN, PsbN,psbM,psb(J),petG,psaJ,trnS(GCU), trnS, trnS-GCU,trnQ(UUG), trnQ, trnQ-UUG,trnS(UGA), trnS, trnS-UGA,trnfM(CAU), trnfM, trnfM-CAU,trnT(GGU), trnT, trnT-GGU,trnY(GUA), trnY, tmY-GUA,trnG(UCC), trnG, trnG-UCC,trnD(GUC), trnD, trnD-GUC,trnH(GUG), trnH, trnH-GUG,ndhB, NDH2, NADH2,rps15,rps15,trnC, trnC(GCA), trnC-GCA,trnR(UCU), trnR, trnR-UCU,trnS(GGA), trnS, trnS-GGA,trnT(UGU), trnT, trnT-UGU,trnM, trnM(CAU), trnM-CAU,ORF82,trnW(CCA), trnW, trnW-CCA,trnP(UGG), trnP, trnP-UGG,rps16,petD, OsPETD,rps2,rps3,psbH, psbF ,rps14 ,PsaB, psaB, PsAA2, psaA2,rps18,petA, Cytf, cytF, Cyt f, OsPETA,psbD, D2, OsPsbD1, OsPsbD2,ORF100,ORF109,trnV, trnV(GAC), trnV-GAC,trnI(GAU), trnI, trnI-GAU,trnA(UGC), trnA, trnA-UGC,ORF133,trnR(ACG), trnR, trnR-ACG,trnN(GUU), trnN, trnN-GUU,trnL(UAG), trnL, trnL-UAG,trnN(GUU), trnN, trnN-GUU,trnR(ACG), trnR, trnR-ACG,trnI(GAU), trnI, trnI-GAU,trnA(UGC), trnA, trnA-UGC,trnV, trnV(GAC), trnV-GAC,ORF249,ORF28,trnL(CAA), trnL, trnL-CAA,trnG(GCC), trnG, trnG-GCC, trnG-UCC,trnE(UUC), trnE, trnE-UUC,rpl23,trnH(GUG), trnH, trnH-GUG,ORF28,ORF63,ORF109,ORF64,ORF23,ORF91,ORF29, petN,ORF72,ORF106, accD,rps7,ORF42,ORF249,psaI, ORF36,ORF85,ORF31, petL,rpl20,infA,atpH,rps7,ORF133, ycf68,ORF85,ORF56, ndhH,ORF321, ccsA,rpl22,ORF63,ORF72,ORF82,ORF133, ycf68,ORF85,trnI(CAU), trnI, trnI-CAU,rrn5,ORF64,trnL(CAA), trnL, trnL-CAA, L-CAA,rpl23,trnI(CAU), trnI, trnI-CAU,atpI,matK, ORF542 ,psbC, cp43, OsPSBC, OsCP43,rpl14,ORF170, ycf3, IRF170, ycf3-1, ycf3-2,rope, rpoalpha, Rpoalpha, rope, RpoA ,rbcL, rbcA, OsrbcL,ndhD, NdhD, NDH4, NADH4,3'rps12, 3'-rps12, rps12,ORF35, psbT,rpl32, ORF63,ORF70,ORF230, cemA,ORF23,ORF137,rps12,atpF, OsatpF,psbB, OsPSBB,atpE,rpoC2, RPO beta", RPObeta",rpl2,trnF(GAA), trnF, trnF-GAA
22656	16808934	Yang,G., Nakamura,H., Ichikawa,H., Kitano,H. and Komatsu,S.	OsBLE3, a brassinolide-enhanced gene, is involved in the growth of rice	Phytochemistry	67(14)	1442-1454	2006	BRD1,BLE3,D61	brd1, OsDWARF, DWARF, OsBR6ox, BR6ox, CYP85A1, CYP85A4, OsDWF, CYP85A1/OsDWARF, OsBRD1, OsCYP85A1,OsBLE3,d61*, dwf42, d61, OsBRI1, OSBRI1, BRI1, Os BRI1, Osbri1, OsBRKq1, BRKq1
22657	15279994	Passardi,F., Longet,D., Penel,C. and Dunand,C.	The class III peroxidase multigenic family in rice and its evolution in land plants	Phytochemistry	65(13)	1879-1893	2004	_,_,_,ATP6,POX5.1,POX22.3,_,PRX16,_,_,POX1,PRX11,PRX65,PRX132,PRX117,PRX128,PRX72,_,_,_,POX3006,POX8.1,POXN,PRX22,POXGX9,POXA,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,AM1,PRX58,PRX134,PRX88,_,PRX77,_,_,_,_,PRX30,PRX39,PRX45,PRX40,PRX55,PRX135,PRX89,PRX5,PRX17,PRX102,PRX32,PRX115,PRX87,PRX81,PRX24,PRX82,PRX20,PRX37,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_	prx83,prx41, OsPrx41, OsPOX8.1, POX8.1, OsPOD2, POD2,prx15,atp6, OsPOX1, prx3, POX1,POX5.1, prx113, POX5,POX22.3, OSPER, OsPOX, POX, Pir3, prx111, POX22, OsPOX1, POX1, OsPOX22.3, OsPR9, PR9,prx60, POX-1,prx16, OsPRX16, OsPOD1, POD1,prx109, POX-2,prx95, OsPRX95,Pox1(Px,Pe), PRX74, Px, Pe, Pox1, prx74,OsPOD, prx11, Osprx11, OsPRX11,prx65, OsPRX65,prx132, prx133, OsPRX132, OsPRX133,prx117, OsPRX117, OsPRX47, PRX47,prx128, OsPRX128, POD128, OsPOD128,prx72, OsPrx72,prx86, PRX86, OsPRX86,prx71, Osprx71,prx105, OsPRX105,POX3006, prx114, Osprx114, PO-C1, POC-1, POC1, OsPOC1, Prx14, OsPrx14, POD3006, OsPOD3006,POX8.1, prx110, POX8,poxN, prx38, prxRPN, RPN, poxN/PRX38, Osprx38, OsPOXN,prx22, OsPRX22, OsPOD,POXgX9, OsPOXgX9, prx112, OsPrx112,poxA, prx126, OsPrx126, prxRPA, RPA,prx4,prx2,prx7,prx6,prx8,prx10,prx1,prx9,prx14,prx18,prx19,prx21,prx26,prx25,prx29,prx31,prx36,prx35,prx42,prx44,prx49,prx50,prx51,prx52,prx56,prx57,prx67,prx70,prx73,prx76,prx79,prx80,prx84,prx85,prx91,prx92,prx93,prx100, prx101,prx103,prx104,prx107,prx108,prx116,prx118,prx119,prx120,prx121,prx122,prx123,prx124,prx127,prx129,prx137,prx138,prx66,RP-2 or RP-4, prx13,prx90,prx75,prx64,prx34, OsPrx34,prx43, OsPRX43,prx46, POD1, OSPOD1,OsAM1, prx53, OsPRX53,prx58, OsPRX58,prx134, OsPRX134, POD134, OsPOD134,prx88, OsPRX88,prx61, OsPRX61,prx77, OsPRX77,prx33,prx63, OsPRX63,prx98, Osprx98, POD1, OsPOD1,prx54,prx30, OsPrx30,prx39, OsPRX39, OsPRX-A2, PRX-A2, POD39, OsPOD39,prx45, OsPRX45, OsPRX2,prx40,Os PRX40, POD40, OsPOD40,prx55, OsPRX55,Pox, prx135, OsPRX1, OsPRX4,prx89, OsPRX89,prx5, OsPRX5, OsPRX9,prx17, OsPRX17, OsPRX72,prx102, OsPRX102,prx32, OsPRX32, OsPER64, PER64,prx115, OsPRX115,prx87, OsPRX87, POD87, OsPOD87,prx81, OsPRX81,prx24, Osprx24,prx82, OsPRX82,prx20, OsPRX20,prx37, OsPRX37, POD37, OsPOD37,prx69,prx97, Osprx97,prx59, OsPRX59,prx78, PRX78, OsPRX78,prx62, OsPRX62,prx12, PRX12, OsPRX12,prx27, PRX27, OsPRX27 ,prx125, PRX125, OsPRX125 ,prx130, OsPRX2,prx68,prx23,prx28,prx47,prx48,prx94,prx96,prx99,prx106,prx136,prx131
22664		Nakamura,H., Satoh,W., Hidaka,S., Kagaya,Y., Ejiri,S. and Tsutsumi,K	Genomic structure of the rice aldolase isozyme C-1 gene and its regulation through a Ca-mediated protein kinase-phosphatase pathway	Plant Mol. Biol.	30	381-385	1996		
22669		Vitha,S., Froehlich,J.E., Koksharova,O., Pyke,K.A., Van Erp,H., Osteryoung,K.W., Vitha,S., Koksharova,O., van Erp,H., Froehlich,J.E., Osteryoung,K.W.	ARC6 Is a J-Domain Plastid Division Protein and an Evolutionary Descendant of the Cyanobacterial Cell Division Protein Ftn2 	Plant Cell	15 (8)	1918-1933	2003		
22681		Shikanai,T., Yang,Z.-Q. and Yamada,Y.	Properties of the circular plasmid-like DNA B1 from mitochondria of cytoplasmic male-sterile rice	Plant Cell Physiol.	28(7)	1243-1251	1987		
22682	7545979	Itadani,H., Wakasugi,T., Sugita,M., Sugiura,M., Nakazono,M. and Hirai,A.	Nucleotide sequence of a 28-kbp portion of rice mitochondrial DNA: the existence of many sequences that correspond to parts of mitochondrial genes in intergenic regions 	Plant Cell Physiol.	35(8)	1239-1244	1994	_,RPS2	trnfM(CAT), trnfM,rps2, orf483 
22683	8528607	Nishiwaki,S., Nakazono,M., Tsutsumi,N. and Hirai,A.	Structure of a gene for subunit 9 of NADH dehydrogenase(nad9) in rice mitochondria and RNA editing of its transcript	Plant Cell Physiol.	36(6)	1135-1138	1995	NAD9	nad9, nad9-1, CI-27kD, CI-27KD
22726	15604740	Fujimoto,S., Matsunaga,S., Yonemura,M., Uchiyama,S., Azuma,T. and Fukui,K.	Identification of a novel plant MAR DNA binding protein localized on chromosomal surfaces	Plant Mol. Biol.	56(2)	225-239	2004	_,AHL1	OsAHL2, AHL2,OsAHL1, OsAHL14, AHL14
22736		Dela Paz,M.A.G., Goodwin,P.H., Raymundo,A.K., Ardales,E.Y. and Vera Cruz,C.M.	Phylogenetic analysis based on ITS sequences and conditions affecting the type of conidial germination of Bipolaris oryzae 	Plant Pathol.	55 (6)	756-765	2006		
22741	15047897	Zhang,Z.L., Xie,Z., Zou,X., Casaretto,J., Ho,T.H. and Shen,Q.J.	A Rice WRKY Gene Encodes a Transcriptional Repressor of the Gibberellin Signaling Pathway in Aleurone Cells 	Plant Physiol.	134 (4)	1500-1513	2004	WRKY75,WRKY22,WRKY3,WRKY15,WRKY23,WRKY27,WRKY24,WRKY74,WRKY13,WRKY31,WRKY71,WRKY7,WRKY35,WRKY48,WRKY64,WRKY12,WRKY54,WRKY37,WRKY50,WRKY40,WRKY11,WRKY43,WRKY57,WRKY47,WRKY16,WRKY51,WRKY45,WRKY42,WRKY29,WRKY52,WRKY70,WRKY69,WRKY26,WRKY6,WRKY10,SGSD3,WRKY1,WRKY56,WRKY21,WRKY38,WRKY2,WRKY76,WRKY62,WRKY46,WRKY58,WRKY25,WRKY77,WRKY28,WRKY55,WRKY60,WRKY65,WRKY9,WRKY61,WRKY53,WRKY68,WRKY17,WRKY33,WRKY67,WRKY18,WRKY41,WRKY20,WRKY39,WRKY34,WRKY72,WRKY5,WRKY8,WRKY66,WRKY4,WRKY32,WRKY14,WRKY19,WRKY30,WRKY49,WRKY73	OsWRKY75,OsWRKY22,OsWRKY3 ,OsWRKY15,OsWRKY23,OsWRKY27,OsWRKY24,OsWRKY74,OsWRKY13,OsWRKY31,OsWRKY71, WRKY-71,OsWRKY7,OsWRKY35,OsWRKY48,OsWRKY64,OsWRKY12,OsWRKY54,OsWRKY37,OsWRKY50,OsWRKY40,OsWRKY11, Dlf1, OsWRKY11.1, OsWRKY11.2,OsWRKY43,OsWRKY57,OsWRKY47,OsWRKY16,OsWRKY51,OsWRKY45, OsWRKY45-1, OsWRKY45-2, WRKY45-1, WRKY45-2,OsWRKY42, WRKY-42,OsWRKY29,OsWRKY52,OsWRKY70,OsWRKY69,OsWRKY26, OsWRKY59, DLN19, OsDLN19,OsWRKY6, WRKY-6, DLN103, OsDLN103,OsWRKY10,OsWRKY36, WRKY36, OsSGSD3,OsWRKY1, OsWRKY1v2,OsWRKY56,OsWRKY21,OsWRKY38,OsWRKY2,OsWRKY76, OsWRKY76.1, OsWRKY76.2, OsWRKY76.3,OsWRKY62, OsWRKY62.1, OsWRKY62.2, XB10, OsWRKY62-1, OsWRKY62-2,OsWRKY46, WRKY91, OsWRKY91,OsWRKY58,OsWRKY25, OsWRKY44, WRKY44,OsWRKY77, WRKY-77,OsWRKY28, DLN170, OsDLN170,OsWRKY55,OsWRKY60,OsWRKY65,OsWRKY9,OsWRKY61, OsWRKY103, WRKY103,OsWRKY53, WRKY-53,OsWRKY68,OsWRKY17,OsWRKY33,OsWRKY67,OsWRKY18,OsWRKY41, WRKY63, OsWRKY63,OsWRKY20,OsWRKY39,OsWRKY34,OsWRKY72, WRKY-72,OsWRKY5 ,OsWRKY8,OsWRKY66,OsWRKY4, WRKY122, OsWRKY122,OsWRKY32,OsWRKY14,OsWRKY19,OsWRKY30,OsWRKY49,OsWRKY73
22743	15618416	Xie Z, Zhang ZL, Zou X, Huang J, Ruas P, Thompson D, Shen QJ.	Annotations and Functional Analyses of the Rice WRKY Gene Superfamily Reveal Positive and Negative Regulators of Abscisic Acid Signaling in Aleurone Cells 	Plant Physiol.	137 (1)	176-189	2005	WRKY51,WRKY67,WRKY46,WRKY27,WRKY16,WRKY75,WRKY39,WRKY70,WRKY45,WRKY52,WRKY19,SGSD3,WRKY29,WRKY47,WRKY1,WRKY69,WRKY57,WRKY61,WRKY8,WRKY102,WRKY21,WRKY62,WRKY11,WRKY38,WRKY4,WRKY56,WRKY10,WRKY5,WRKY24,WRKY34,WRKY35,WRKY41,WRKY28,WRKY33,WRKY23,WRKY32,WRKY64,WRKY50,WRKY3,WRKY72,WRKY58,WRKY17,WRKY49,WRKY2,WRKY55,WRKY60,WRKY48,WRKY71,WRKY31,WRKY26,WRKY53,WRKY14,WRKY77,WRKY13,WRKY65,WRKY30,WRKY68,WRKY40,WRKY18,WRKY20,WRKY12,WRKY43,WRKY37,WRKY54,WRKY9,WRKY76,WRKY73,WRKY42,WRKY66,WRKY74,WRKY25,WRKY90,WRKY15,WRKY6,WRKY22,WRKY87,WRKY7	OsWRKY51,OsWRKY67,OsWRKY46, WRKY91, OsWRKY91,OsWRKY27,OsWRKY16,OsWRKY75,OsWRKY39,OsWRKY70,OsWRKY45, OsWRKY45-1, OsWRKY45-2, WRKY45-1, WRKY45-2,OsWRKY52,OsWRKY19,OsWRKY36, WRKY36, OsSGSD3,OsWRKY29,OsWRKY47,OsWRKY1, OsWRKY1v2,OsWRKY69,OsWRKY57,OsWRKY61, OsWRKY103, WRKY103,OsWRKY8,OsWRKY102,OsWRKY21,OsWRKY62, OsWRKY62.1, OsWRKY62.2, XB10, OsWRKY62-1, OsWRKY62-2,OsWRKY11, Dlf1, OsWRKY11.1, OsWRKY11.2,OsWRKY38,OsWRKY4, WRKY122, OsWRKY122,OsWRKY56,OsWRKY10,OsWRKY5 ,OsWRKY24,OsWRKY34,OsWRKY35,OsWRKY41, WRKY63, OsWRKY63,OsWRKY28, DLN170, OsDLN170,OsWRKY33,OsWRKY23,OsWRKY32,OsWRKY64,OsWRKY50,OsWRKY3 ,OsWRKY72, WRKY-72,OsWRKY58,OsWRKY17,OsWRKY49,OsWRKY2,OsWRKY55,OsWRKY60,OsWRKY48,OsWRKY71, WRKY-71,OsWRKY31,OsWRKY26, OsWRKY59, DLN19, OsDLN19,OsWRKY53, WRKY-53,OsWRKY14,OsWRKY77, WRKY-77,OsWRKY13,OsWRKY65,OsWRKY30,OsWRKY68,OsWRKY40,OsWRKY18,OsWRKY20,OsWRKY12,OsWRKY43,OsWRKY37,OsWRKY54,OsWRKY9,OsWRKY76, OsWRKY76.1, OsWRKY76.2, OsWRKY76.3,OsWRKY73,OsWRKY42, WRKY-42,OsWRKY66,OsWRKY74,OsWRKY25, OsWRKY44, WRKY44,OsWRKY90,OsWRKY15,OsWRKY6, WRKY-6, DLN103, OsDLN103,OsWRKY22,OsWRKY87, OsSUSIBA2-like,OsWRKY7
22744	16169968	Bogs,J., Downey,M.O., Harvey,J.S., Ashton,A.R., Tanner,G.J. and Robinson,S.P.	Proanthocyanidin synthesis and expression of genes encoding leucoanthocyanidin reductase and anthocyanidin reductase in developing grape berries and grapevine leaves	Plant Physiol.	139(2)	652-663	2005	LAR	OsLAR
22747	16384910	Tian,X., Zheng,J., Hu,S. and Yu,J.	The Rice Mitochondrial Genomes and Their Variations 	Plant Physiol.	140(2)	401-410	2006	_,26S  rRNA,NAD3,5S  rRNA,_,RPS11.P,_,_,_,_,_,RPS13,_,_,_,_,_,_,_,_,_,_,RPS2,_,_,_,RPS19,_,RPS12,_,_,_,CCMC,ORFX,RPS4,_,_,_,_,RPS7,_,_,_,_,_,_,_,_,_,NAD4L,_,_,_,_,RPL16,_,_,_,_,_,_,_,_,_,_,_,5S  rRNA,_,_,_,_,_,_,_,26S  rRNA,_,_,_,RPS1,_,_,NAD7,NAD5,NAD6,NAD1,NAD2,18S  rRNA,GSLm,_,_,_,_,_,_,NAD4	trnE(UUC), trnE, trnE-UUC,rrn26,nad3,rrn5,trnH(GTG), trnH,rps11.p, pseudo-rps11 ,trnW(CCA), trnW,rrn18,trnI(CAT), trnI,orf288, LD-orf310,trnW(CCA), trnW,rps13,rps14, rps14.p, pseudo-rps14,trnS(GGA), trnS,orf162, orf162-1,orf194,orf153,rps14, rps14.p, pseudo-rps14,orf173, orf173-1, orf173b,mat-r, mat-r-1,orf187, orf187-1,ccmFc, ccmFc-1,rps2, orf483 ,trnL(AAC), trnL,trnQ(TTG), trnQ,trnS(TGA), trnS,rps19,orf176, orf173 ,rps12,orf181,trnF(GAA), trnF,trnQ(TTG), trnQ,ccmC, orf240,orfX,rps4,cox2, coxII,orf25, atp4,orf152a, orf152b,orf490,rps7,trnM(CAT), trnM,ccmB,trnM(CAT), trnM,trnD(GTC), trnD,trnM(CAT), trnM,orf183,trnK(TTT), trnK,trnP(TGG), trnP,orf224, orf224a, orf224b,nad4L,orf284, orf284-1,orf165, orf165-1,orf160, orf160b ,nad9, nad9-2,rpl16, pseudo-rpl16,trnP(TGG), trnP,orf161,trnC(GCA), trnC,orf162, orf162-2,trnH(GTG), trnH,trnP(TGG), trnP,orf152b, orf152b-1, orf152,trnY(GTA), trnY,trnP(TGG), trnP,trnE(TTC), trnE,atp9, RMtATP9, aatp9,rrn5,rpl5, rpl5-1,trnS(GCT), trnS,trnC(GCA), trnC,trnfM(CAT), trnfM,trnY(GTA), trnY,atp1, atp1-2,trnR(TCT), trnR,rrn26,trnI, pseudo-trnI,trnS(GGA), trnS,trnN(GTT), trnN,rps1, rps1a, rps1b, rps1-1,trnE(TTC), trnE,trnF(GAA), trnF,nad7,nad5, OsNAD5,nad6,nad1, Osnad1, nadI, nadIB,nad2, OsNAD2,rrn18,orf241, OsGSLm, OsGSLmt, GSLmt,ccmFn, ccmFn-1,coxI, COX1, cox1-1, cox1,cox3, coxIII, cox3a, cox3b, cox3c,orfB, atp8 ,cob, cob-1, cob-like, cyt c,atp6, N-atp6, B-ATP6, B-atp6, atp6-1,nad4, nadIV
22748	17012407	Chu,H., Qian,Q., Liang,W., Yin,C., Tan,H., Yao,X., Yuan,Z., Yang,J., Huang,H., Luo,D., Ma,H. and Zhang,D.	The FLORAL ORGAN NUMBER4 Gene Encoding a Putative Ortholog of Arabidopsis CLAVATA3 Regulates Apical Meristem Size in Rice 	Plant Physiol.	142 (3)	1039-1052	2006	FON1,FON2,_,_,_,_,_,_,_,_,_,_,_,_	OsFON1, fon1, OsRLCK219, RLCK219,fon2, OsFON2, FON4, OsFON4, FON2/FON4, TG1,Os_CLE24, OsCLE24, CLE24,Os_CLE15, OsCLE15, CLE15,Os_CLE51, OsCLE51, CLE51,Os_CLE46, OsCLE46, CLE46,Os_CLE44, OsCLE44, CLE44,Os_CLE49, OsCLE49, CLE49,Os_CLE45, OsCLE45, CLE45,Os_CLE43, OsCLE43, CLE43,Os_CLE42, OsCLE42, CLE42,Os_CLE47, OsCLE47, CLE47,Os_CLE50, OsCLE50, CLE50,Os_CLE48, OsCLE48, CLE48
22752		Vitte,C., Chaparro,C., Quesneville,H. and Panaud,O.	Spip and Squiq, two novel rice non-autonomous LTR retro-element families related to RIRE3 and RIRE8 	Plant Sci.	172 (1)	8-19	2007	SPIP,SQUIQ	Spip,Squiq
22755	12430018	van den Brule,S. and Smart,C.C.	The plant PDR family of ABC transporters 	Planta.	216 (1)	95-106	2002	PDR9,PDR10,PDR11,PDR8	OsPDR9, ospdr9, OsPDR3, PDR3, OsABCG36/OsPDR9, OsABCG36,OsABCG34, OsPDR10, OsPDR1,OsABCG35, OsPDR11, OsPDR2,OsPDR8, PDR4, P0410E03.16, OsABCG37, OsPDR4
22756	15452707	Tobias,C.M. and Chow,E.K.	Structure of the cinnamyl-alcohol dehydrogenase gene family in rice and promoter activity of a member associated with lignification 	Planta.	220 (5)	678-688	2005	GH2,FC1,CAD6,CAD4,CAD5,CAD8A,CAD9,CAD8B,CAD1,CAD8D,CAD3,CAD8C	gh2, CAD2, CAD, OsCAD2, OsGH2 ,OsCAD7, fc1, CAD7,OsCAD6,OsCAD4,OsCAD5,OsCAD8A,OsCAD9,OsCAD8B,OsCAD1,OsCAD8D,OsCAD3,OsCAD8C, CAD8c
22762	16896793	Yang, Q., Liang, C., Zhuang, W., Li, J., Deng, H., Deng, Q. and Wang, B.	Characterization and identification of the candidate gene of rice thermo-sensitive genic male sterile gene tms5 by mapping 	Planta.	225 (2)	321-330	2007	TMS5	tms5, NAC18, ONAC023, ONAC23, NAC23, TMS5/ONAC023, OsEnS-30
22764	15210936	Schneider,C., Will,C.L., Brosius,J., Frilander,M.J. and Luhrmann,R.	Identification of an evolutionarily divergent U11 small nuclear ribonucleoprotein particle in Drosophila 	Proc. Natl. Acad. Sci. U.S.A.	101 (26)	9584-9589	2004	_	
22768	8710903	Bureau,T.E., Ronald,P.C. and Wessler,S.R.	A computer-based systematic survey reveals the predominance of small inverted-repeat elements in wild-type rice genes	Proc. Natl. Acad. Sci. U.S.A.	93(16)	8524-8529	1996	GAIJIN-OS1,GAIJIN-OS2,GAIJIN-OS3,GAIJIN-OS4,DITTO-OS1,DITTO-OS2,WANDERER-OS1,WANDERER-OS2,WANDERER-OS3,WANDERER-OS4,WANDERER-OS5,WANDERER-OL1,EXPLORER-OS1,EXPLORER-OS2,EXPLORER-OS3,CASTAWAY-OS1,CASTAWAY-OS2	Gaijin-Os1,Gaijin-Os2,Gaijin-Os3,Gaijin-Os4,Ditto-Os1,Ditto-Os2,Wanderer-Os1,Wanderer-Os2,Wanderer-Os3,Wanderer-Os4,Wanderer-Os5,Wanderer-Ol1,Explorer-Os1,Explorer-Os2,Explorer-Os3,Castaway-Os1,Castaway-Os2
22773	15016992	Yan,L., Loukoianov,A., Blechl,A., Tranquilli,G., Ramakrishna,W., SanMiguel,P., Bennetzen,J.L., Echenique,V. and Dubcovsky,J.	The wheat VRN2 gene is a flowering repressor down-regulated by vernalization	Science	303 (5664)	1640-1644	2004	-,CMF11	OsI,OsCCT35, CCT35, OsCMF11, OsH, DLN240, OsDLN240
22775	15965650	Yang,T.J., Yu,Y., Chang,S.B., de Jong,H., Oh,C.S., Ahn,S.N., Fang,E. and Wing,R.A.	Toward closing rice telomere gaps: mapping and sequence characterization of rice subtelomere regions 	Theor. Appl. Genet.	111 (3)	467-478	2005		
22782		Motohashi,R., Mochizuki,K., Ohtsubo,H. and Ohtsubo,E.	Structures and distribution of p-SINE1 members in rice genomes	Theor. Appl. Genet.	95(3)	359-368	1997	_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_	p-SINE1-r21,p-SINE1-r22,p-SINE1-r23,p-SINE1-r24,p-SINE1-r26,p-SINE1-r27,p-SINE1-r28,p-SINE1-r31,p-SINE1-r33,p-SINE1-r35,p-SINE1-r36,p-SINE1-r100,p-SINE1-r101,p-SINE1-r102,p-SINE1-r103,p-SINE1-r104,p-SINE1-r105,p-SINE1-r106,p-SINE1-r107,p-SINE1-r108,p-SINE1-r109,p-SINE1-r111,p-SINE1-r112,p-SINE1-r38,p-SINE1-r2,p-SINE1-r4,p-SINE1-r5,p-SINE1-r6,p-SINE1-r3,p-SINE1-r25,p-SINE1-r1, p-SINE1-r1* ,p-SINE1-r30,p-SINE1-r34,p-SINE1-r7,p-SINE1-r29,p-SINE1-r32
22783		Chen,J., Chen,J., Chen,J., Tang,W.H., Hong,M.M., Wang,Z.Y.	OsBP-73, a rice gene, encodes a nove	Thesis (University of Edinburgh, Dept. of Computer Science)			2002		
22784		Peng,L.T., Peng,L.T., Wang,J., Zhang,J.L., Peng,L.T.	 The functional analysis of gamma-glutamylcysteine synthetase gene in Oryza sativa	Thesis (University of Edinburgh, Dept. of Computer Science)		Institute	2003		
22786	16520319	Lu,Y.H., Ma,L.X. and Jiang,S.J.	[A universal high-throughput novel method of constructing the vectors]	Yi Chuan	28 (2)	212-218	2006		
22801	8939818	Aragon-Alcaide,L.F., Miller,T., Schwarzacher,T., Reader,S.and Moore,G.	A cereal centromeric sequence	Chromosoma	105(5)	261-268	1996		
22802	2693947	Tatsumi,H., Ogawa,Y., Murakami,S., Ishida,Y., Murakami,K., Masaki,A., Kawabe,H., Arimura,H., Nakano,E. and Motai,H.	A full length cDNA clone for the alkaline protease from Aspergillus oryzae: structural analysis and expression in Saccharomyces cerevisiae.,	Mol. Gen. Genet.	219(1-2)	33-38	1989		
22803	12872996	Park,K.C., Jeong,C.S., Song,M.T. and Kim,N.S.	A new MITE family, Pangrangja, in Gramineae species	Mol. Cells	15 (3)	373-380	2003	PANGRANGIA	Pangrangia
22805	16233720	Matsumura,K., Hisada,H., Obata,H., Hata,Y., Kawato,A., Abe,Y. and Akita,O.	A Novel Amine Oxidase-Encoding Gene from Aspergillus oryzae	J. Biosci. Bioeng.	98(5)	359-365	2004		
22807		Komori,T. and Nitta,N.	A simple method to control the seed purity of japonica hybrid rice varieties using PCR-based markers	Plant Breeding	123(6)	549-553	2004	RF1,_,[CMS-BO]	Rf1 (Rf-1), rf-1, PPR791, PPR8-1, Rf-1, Rf1, Rf-1A, Rf5, Rf1a, RF5, Rf5(t)*(Rf(t)*), RF1A, PPR6, PLS31, OsPLS31,atp6, N-atp6, B-ATP6, B-atp6, atp6-1,[cms-bo]
22808	15056900	Jin,F.J., Maruyama,J., Juvvadi,P.R., Arioka,M. and Kitamoto,K.	Adenine Auxotrophic Mutants of Aspergillus oryzae: Development of a Novel Transformation System with Triple Auxotrophic Hosts	Biosci. Biotechnol. Biochem.	68(3)	656-662	2004		
22809	1495393	Tang,C.M., Cohen,J. and Holden,D.W.	An Aspergillus fumigatus alkaline protease mutant constructed by gene disruption is deficient in extracellular elastase activity	Mol. Microbiol.	6(12)	1663-1671	1992		
22818	16040802	Lee,H.R., Zhang,W., Langdon,T., Jin,W., Yan,H., Cheng,Z. and Jiang,J.	Chromatin immunoprecipitation cloning reveals rapid evolutionary patterns of centromeric DNA in Oryza species	Proc. Natl. Acad. Sci. U.S.A.	102 (33)	11793-11798	2005	CENH3	OsCENH3, CenH3
22821	15757176	Yoshida,S., Suzuki,F., Tsukiboshi,T. and Shinohara,H.	Cloning and characterization of a gene rpg1 encoding polygalacturonase of Rhizopus oryzae	Mycol. Res.	108(PT 12)	1407-1414	2004		
22824	16306700	Watanabe,M., Sumida,N., Yanai,K. and Murakami,T.	Cloning and Characterization of Saponin Hydrolases from Aspergillus oryzae and Eupenicillium brefeldianum	Biosci. Biotechnol. Biochem.	69(11)	2178-2185	2005		
22825	15502348	Kaya,M., Matsumura,M., Higashida,K., Hata,Y.,  Kawato,A., Abe,Y., Akita,O., Takaya,N. and Shoun, H.	Cloning and Enhanced Expression of the Cytochrome P450nor Gene (nicA; CYP55A5) Encoding Nitric Oxide Reductase from Aspergillus oryzae	Biosci. Biotechnol. Biochem.	68(10)	2040-2049	2004		
22826	16233832	Hisada,H., Hata,Y., Kawato,A., Abe,Y. and Akita,O.	Cloning and Expression Analysis of Two Catalase Genes from Aspergillus oryzae	J. Biosci. Bioeng.	99(6)	562-568	2005		
22828	15158278	Fu,Y., Lee,H., Collins,M., Tsai,H.F., Spellberg,B., Edwards,J.E.Jr, Kwon-Chung,K.J. and Ibrahim,A.S.	Cloning and functional characterization of the Rhizopus oryzae high affinity iron permease (rFTR1) gene	FEMS Microbiol. Lett.	235 (1)	169-176	2004		
22829	7584030	Ashikawa,I., Kurata,N., Nagamura,Y. and Minobe,Y.	Cloning and mapping of telomere-associated sequences from rice	DNA Res.	1	67-76	1994		
22830		Tada,S., Iimura,Y., Gomi,K., Takahashi,K., Hara,S. and Yoshizawa,K.	Cloning and nucleotide sequence of the genomic Taka-amylase A gene of Aspergillus oryzae	Agric. Biol. Chem.	53(3)	593-599	1989		
22831	12596854	Kato,Y., Kato,Y., Furukawa,K. and Hara,S.	Cloning and Nucleotide Sequence of the Glutamate Decarboxylase-encoding Gene gadA from Aspergillus oryzae	Biosci. Biotechnol. Biochem.	66(12)	2600-2605	2002		
22832	12723619	Matsuo,I., Kim,S., Yamamoto,Y., Ajisaka,K., Maruyama,J., Nakajima,H. and Kitamoto,K.	Cloning and Overexpression of beta-N-Acetylglucosaminidase Encoding Gene nagA from Aspergillus oryzae and Enzyme-catalyzed Synthesis of Human Milk Oligosaccharid	Biosci. Biotechnol. Biochem.	67(3)	646-650	2003		
22835	9765593	Beer,H.D., McCarthy,J.E., Bornscheuer,U.T. and Schmid,R.D.	Cloning, expression, characterization and role of the leader sequence of a lipase from Rhizopus oryzae	Biochim. Biophys. Acta	1399 (2-3)	173-180	1998		
22836	14716498	Kihara,J., Moriwaki,A., Ueno,M., Tokunaga,T., Arase,S., Honda,Y.	Cloning, functional analysis and expression of a scytalone dehydratase gene (SCD1) involved in melanin biosynthesis of the phytopathogenic fungus Bipolaris oryzae	Curr. Genet.	45(4)	197-204	2004		
22837	15138697	Kihara,J., Moriwaki,A., Matsuo,N., Arase,S., Honda,Y.	Cloning, functional characterization, and near-ultraviolet radiation-enhanced expression of a photolyase gene (PHR1) from the phytopathogenic fungus Bipolaris oryzae	Curr. Genet.	46(1)	37-46	2004		
22838	12869764	The Rice Full-Length cDNA Consortium	Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice	Science	301(5631)	376-379	2003	EXPA31	OsEXPA31
22839	15689432	Seif,E., Leigh,J., Liu,Y., Roewer,I., Forget,L. and Lang,B.F.	Comparative mitochondrial genomics in zygomycetes: bacteria-like RNase P RNAs, mobile elements and a close source of the group I intron invasion in angiosperms	Nucleic Acids Res.	33 (2)	734-744	2005		
22840		Toda,T., Mghalu,J.M., Pryatomojo,A. and Hyakumachi,M.	Comparison of sequences for the internal transcribed spacer region in Rhizoctonia solani AG 1-ID and other subgroups of AG 1	J. Gen. Plant Pathol.	70(5)	270-272	2004		
22842	15587062	Bills,G.F., Platas,G. and Gams,W.	Conspecificity of the cerulenin and helvolic acid producing 'Cephalosporium caerulens', and the hypocrealean fungus Sarocladium oryzae	Mycol. Res.	108 (PT 11)	1291-1300	2004		
22844	15845386	Seshime,Y., Juvvadi,P.R., Fujii,I. and Kitamoto,K.	Discovery of a novel superfamily of type III polyketide synthases in Aspergillus oryzae	Biochem. Biophys. Res. Commun.	331(1)	253-260	2005		
22845	15302836	Mizutani,O., Nojima,A., Yamamoto,M., Furukawa,K., Fujioka,T., Yamagata,Y., Abe,K. and Nakajima,T.	Disordered Cell Integrity Signaling Caused by Disruption of the kexB Gene in Aspergillus oryzae	Eukaryotic Cell	3(4)	1036-1048	2004		
22851		Shirasawa,K., Kishitani,S. and Nishio,T.	Dot-Blot Analysis for Identification of japonica Rice Cultivars and Genotyping of Recombinant Inbred Lines.	Breeding Science	55(2)	187-192	2005		
22852	15716045	Kobayashi,S., Noro,Y., Nagano,H., Yoshida,K.T., Takano-Shimizu,T., Kishima,Y. and Sano,Y.	Evidence for an evolutionary force that prevents epigenetic silencing between tail-to-tail rice genes with a short spacer	Gene	346	231-240	2005	EPSPS,RPS20	EPSPs, OsEPSPS,rps20
22855		Hihara,Y., Shoda,K., Liu,Q., Hara,C., Umeda,M., Toriyama,K. and Uchiyama,H.	Expressed sequence tags in developing anthers of rice (Oryza sativa L.)	Plant Biotechnol.	14(1)	71-75	1997	OC1,_,CHS,_,TID1,_,LRT2,_,_,_,_,_,_,_,_,_,BGAL7,_,_,EIF1A2,_,RPL7,_,_,_,_,_,RFA1,RPL19,_,RSUS2,CYB5-4,HSP58.7,EIF4A1,GSK6,RPS5,_,HMGB710,TIP1;1,_,RPL26,H2B.3,P0A,P1,P2C,_,_,GRP3,SODA1,RSUS1,BIP1,SCE2,NIP1;1,RACK1B,C6,PSBO,PSBB,_	Oc1*, Oc1, OC-I, SPOC-I, OsCP1, Oc, OCI, OsCYS1, OsPR6b, PR6b,,CHS*, Oschs, chs, chas, OsCHS, OsCHS1, CHS1, OsPKS26, PKS26, OsCHS24, CHS24, OsCHS27, CHS27,,OsTID1, TubA2, SRS5, OS-TubA2, OsTubA2, OsSRS5, ,,CYC2, cyc2*, cyc2, OsCYP2, Cyp2, OsCYP19-2, CYP19-2, OsCYP-2, OsCyp2-P, OsCyp2, OsCYP19-1, LRT2/OsCYP2, lrt2*, lrt2, Ppcti ,,,,,,,,,,OsBgal7, OsBGal7, CARSR12,,,OseIF1A-2,OsRab11D1, OsRab11, Rab11, ric2,rpl7,,,,,,rfa1*, REFA1, refa1, OseEF-1A, eEF-1A, Osef1a1,RPL19.3, OsRPL19.3, OsRPL19, RPL19e, OsRPL19e,Dhr6, OsUBC5b, OsUBC16, UBC16,sus2, RSus2(t), SUS2, SS1, OsScS1, RSs1, RSus2, OsSUS2, RSS1, RSus1, OsSusy2, Susy2, OsRSUS1, RSUS1,OsCYB5-4,OsHsp58.7, OsHSP58.7, OsISC25, ISC25,eIF-4a, EIF4A, OseIF4A, eIF4A1, elF-4A, eIF4A-1, OsRH4,OsSK13/OsGSK6, OsSK13, OsGSK6, SK13,RPS5A, OsRPS5, OsRPS5A,DHFR, OsDFR3, DFR3,OsHMGB710, OsNFD101, NFD101,OsTIP1;1, TIP1-1, rTIP1,OsH3,RPL24b, OsRPL26, OsRPL24b,OsH2B.3,YK704, Os60sP0, OsP0A,OsP1,OsP2C,,,OsGRP3, RTP, RBP-152 ,SodA1, OsSODA1, Mn-SOD, Mn- SOD, OsMSD, MnSOD, OsMnSOD, MnSOD1, OsMnSOD1,sus1, RSus1(t), SUS1, SS2, OsScS2, RSs2, RSus1, SuSy1, OsSUS1, RSS2, RSus2, OsRSUS1,OsBiP1, BiP1, BiP, Bip3, OsBiP3, BIP1/OsBIP3, OsMed37_2, Med37_2 ,OsSce2, Sce2, OsUBC2, UBC2, OsSCE1a, SCE1a, OsSCE1a.1, OsSCE1a.2,OsNIP1;1, NIP1-1, rMIP1, MIP1, OsNIP1.1, NIP1.1,OsWD40-122, WD40-122, OsRACK1B,Osc6, Osg6B, OsG6B, OsLTPG25, OsLTPg25, OsLtpVII.1, Os C6,PsbO, psbO, OsPSBO,psbB, OsPSBB,OsCKA2-2, CKA2-2
22856	14717841	Kihara,J., Moriwaki,A., Ito,M., Arase,S. and Honda,Y.	Expression of THR1, a 1,3,8-trihydroxynaphthalene reductase gene involved in melanin biosynthesis in the phytopathogenic fungus Bipolaris oryzae, is enhanced by near-ultraviolet radiation	Pigment Cell Res.	17	15-23	2004		
22858	15466528	Akazawa,S., Karino,T., Yoshida,N., Katsuragi,T. and Tani,Y.	Functional Analysis of Fructosyl-Amino Acid Oxidases of Aspergillus oryzae	Appl. Environ. Microbiol.	70(10)	5882-5890	2004		
22859	1339327	Hata,Y., Kitamoto,K., Gomi,K., Kumagai,C. and Tamura,G.	Functional elements of the promoter region of the Aspergillus oryzae glaA gene encoding glucoamylase	Curr. Genet.	22(2)	85-91	1992		
22860		Fei,X.W., Deng,X.D., Wang,Y.S., Liu,L.S. and Xu,Z.F.	Genetic Analysis and molecular characterization of the GTP binding protein alpha-subunit gene from rice dwarf mutatant dwarf 69	Acta scientiarum naturalium, Universitatis Sunyatseni (Zhongshan Da Xue Xue Bao Zi Ran Ke Xue Ban)	43 (1)	70-74	2004	D1	d1, GPA1, GA1, OsGA1, RGA1, dwf1, XA7, RGA, D1/RGA1, D89, TGW5, OsTGW5, SRG5, OsSRG5
22861	15278242	Saito,K., Saito,A., Ohnishi,M. and Oda,Y.	Genetic diversity in Rhizopus oryzae strains as revealed by the sequence of lactate dehydrogenase genes	Arch. Microbiol.	182(1)	30-36	2004		
22862	15978416	Nagao,K., Ota,T., Tanikawa,A., Takae,Y., Mori,T., Udagawa,S. and Nishikawa,T.	Genetic identification and detection of human pathogenic Rhizopus species, a major mucormycosis agent, by multiplex PCR based on internal transcribed spacer region of rRNA gene	J. Dermatol. Sci.	39 (1)	23-31	2005		
22863	16372010	Machida,M. et al.	Genome sequencing and analysis of Aspergillus oryzae	Nature	438(7071)	1157-1161	2005		
22865	9872797	Watson,A.J., Fuller,L.J., Jeenes,D.J. and Archer,D.B.	Homologues of aflatoxin biosynthesis genes and sequence of aflR in Aspergillus oryzae and Aspergillus sojae	Appl. Environ. Microbiol.	65(1)	307-310	1999		
22869	15336395	Moriwaki,A., Kihara,J., Kobayashi,T., Tokunaga,T., Arase,S. and Honda,Y.	Insertional mutagenesis and characterization of a polyketide synthase gene (PKS1) required for melanin biosynthesis in Bipolaris oryzae	FEMS Microbiol. Lett.	238(1)	1-8	2004		
22875	15388959	Ishida,H., Hata,Y., Kawato,A., Abe,Y. and Kashiwagi,Y.	Isolation of a Novel Promoter for Efficient Protein Production in Aspergillus oryzae	Biosci. Biotechnol. Biochem.	68(9)	1849-1857	2004		
22880	12092808	Ishida,H., Moritani,T., Hata,Y., Kawato,A., Suginami,K., Abe,Y.and Imayasu,S.	Molecular Cloning and Overexpression of fleA Gene Encoding a Fucose-specific Lectin of Aspergillus oryzae	Biosci. Biotechnol. Biochem.	66(5)	1002-1008	2002		
22881	11999400	Kimura,T., Suzuki,H., Furuhashi,H., Aburatani,T., Morimoto,K., Sakka,K. and Ohmiya,K.	Molecular Cloning, Characterization, and Expression Analysis of the xynF3 Gene from Aspergillus oryzae	Biosci. Biotechnol. Biochem.	66(2)	285-292	2002		
22882	11210150	Kimura,T., Suzuki,H., Furuhashi,H., Aburatani,T., Morimoto,K., Karita,S., Sakka,K. and Ohmiya,K.	Molecular Cloning, Overexpression, and Purification of a Major Xylanase from Aspergillus oryzae	Biosci. Biotechnol. Biochem.	64(12)	2734-2738	2000		
22883	15555943	Masuo,N., Ito,K., Yoshimune,K., Hoshino,M., Matsushima,K., Koyama,Y. and Moriguchi,M.	Molecular cloning, overexpression, and purification of Micrococcus luteus K-3-type glutaminase from Aspergillus oryzae RIB40	Protein Expr. Purif.	38 (2)	272-278	2004		
22885	15951485	Huang,C.Y., Gruenheit,N., Ahmadinejad,N., Timmis,J.N. and Martin,W.	Mutational decay and age of chloroplast and mitochondrial genomes transferred recently to angiosperm nuclear chromosomes.	Plant Physiol.	138(3)	1723-1733	2005		
22886	15710378	Sayari,A., Frikha,F., Miled,N., Mtibaa,H., Ben Ali,Y., Verger,R. and Gargouri,Y.	N-terminal peptide of Rhizopus oryzae lipase is important for its catalytic properties	FEBS Lett.	579 (5)	976-982	2005		
22890	2552410	Kadowaki,K., Suzuki,T., Kazama,S., Oh-fuchi,T. and Sakamoto,W.	Nucleotide sequence of the cytochrome oxidase subunit I gene from rice mitochondria	Nucleic Acids Res.	17(18)	7519	1989	_	coxI, COX1, cox1-1, cox1
22891	2138730	Kadowaki,K.I., Kazama,S. and Suzuki,T.	Nucleotide sequence of the F1-ATPase alpha subunit gene from rice mitochondria.	Nucleic Acids Res.	18(5)	1302	1990	_	atpA, RMtATPa 
22892	15802503	Couch,B.C., Fudal,I., Lebrun,M.H., Tharreau,D., Valent,B., van Kim,P., Notteghem,J.L. and Kohn,L.M.	Origins of host-specific populations of the blast pathogen Magnaporthe oryzae in crop domestication with subsequent expansion of pandemic clones on rice and weeds of rice	Genetics	170 (2)	613-630	2005		
22897	15650813	Nishikawa,T., Vaughan,D.A. and Kadowaki,K.	Phylogenetic analysis of Oryza species, based on simple sequence repeats and their flanking nucleotide sequences from the mitochondrial and chloroplast genomes	Theor. Appl. Genet.	110(4)	696-705	2005		
22899	15046309	Haugland,R.A., Varma,M., Wymer,L.J. and Vesper,S.J.	Quantitative PCR analysis of selected Aspergillus, Penicillium and Paecilomyces species	Syst. Appl. Microbiol	27 (2)	198-210	2004		
22900	15488154	Kunii,M., Kanda,M., Nagano,H., Uyeda,I., Kishima,Y. and Sano,Y.	Reconstruction of putative DNA virus from endogenous rice tungro bacilliform virus-like sequences in the rice genome: implications for integration and evolution	BMC Genomics.	5	80	2004		
22904	8752869	Ito, Y., Nakazono, M., Kadowaki, K., Tsutsumi, N .and Hirai, A.	RNA editing of transcripts of the gene for apocytochrome b (cob) in rice mitochondria	Genes Genet. Syst.	71(2)	85-89	1996	_	cob, cob-1, cob-like, cyt c
22905	2326174	Kaleikau,E.K., Andre,C.P., Doshi,B. and Walbot,V.	Sequence of the rice mitochondrial gene for apocytochrome b	Nucleic Acids Res.	18(2)	372	1990	_	cob, cob-1, cob-like, cyt c
22907	15616142	Nagaki,K., Neumann,P., Zhang,D., Ouyang,S., Buell,C.R., Cheng,Z. and Jiang,J.	Structure, divergence, and distribution of the CRR centromeric retrotransposon family in rice	Mol. Biol. Evol.	22 (4)	845-855	2005		
22908	12702266	Scorzetti,G., Fell,J.W., Fonseca,A. and Statzell-Tallman,A.	Systematics of basidiomycetous yeasts: a comparison of large subunit D1/D2 and internal transcribed spacer rDNA regions	FEMS Yeast Res.	2 (4)	495-517	2002		
22913	1718614	Suzuki,T., Kazama,S., Hirai,A., Akihama,T. and Kadowaki,K.	The rice mitochondrial nad3 gene has an extended reading frame at its 5' end: nucleotide sequence analysis of rice trnS, nad3, and rps12 genes	Curr. Genet.	20 (4)	331-337	1991	NAD3,_,RPS12,_	nad3,trnS(GCT), trnS,rps12,coxI, COX1, cox1-1, cox1
22920		James,D. and Schmidt, A.-M.	Use of an intron region of a chloroplast tRNA gene (trnL) as a target for PCR identification of specific food crops including sources of potential allergens	Food Res. Intern.	37(4)	395-402	2004	_	trnL(UAA), trnL, trnL-UAA
22921	16094432	Mian,M.A., Saha,M.C., Hopkins,A.A. and Wang,Z.Y.	Use of tall fescue EST-SSR markers in phylogenetic analysis of cool-season forage grasses	Genome	48 (4)	637-647	2005		
22922	16774645	Albar,L., Bangratz-Reyser,M., Hebrard,E., Ndjiondjop,M.N., Jones,M. and Ghesquiere,A.	Mutations in the eIF(iso)4G translation initiation factor confer high resistance of rice to Rice yellow mottle virus.	Plant J.	47(3)	417-426	2006	RYMV1	Rymv1, eIF(iso)4G, OsRYMV1, OseIF(iso)4G, eIFiso4G
22923	16926158	Bashir,K., Inoue,H., Nagasaka,S., Takahashi,M., Nakanishi,H., Mori,S. and Nishizawa,N.K.	Cloning and characterization of deoxymugineic Acid synthase genes from graminaceous plants.	J. Biol. Chem.	281(43)	32395-32402	2006	DMAS1	OsDMAS1, OsAKR5, AKR5
22924	16436304	Cao,Y., Song,F., Goodman,R.M. and Zheng,Z.	Molecular characterization of four rice genes encoding ethylene-responsive transcriptional factors and their expressions in response to biotic and abiotic stress.	J. Plant Physiol.	163(11)	1167-1178	2006	ERF72,ERF3	OsEREBP, OsERF#072, OsERF072, OsERF72, AP2/EREBP#064, AP2/EREBP64, BIERF1, OsBIERF1, OsEBP2,AP37, OsAP37, OsERF3, OsERF#075, OsERF075, OsERF75, ERF75, AP2/EREBP#004, AP2/EREBP4, OsBIERF2, BIERF2, DLN23, OsDLN23
22925	16977424	Chae,M.J., Lee,J.S., Nam,M.H., Cho,K., Hong,J.Y., Yi,S.A., Suh,S.C. and Yoon,I.S.	A rice dehydration-inducible SNF1-related protein kinase 2 phosphorylates an abscisic acid responsive element-binding factor and associates with ABA signaling.	Plant Mol. Biol.	63(2)	151-169	2007	ABI5,SAPK6	OsABI5, OsbZIP10, OsABF1, OREB1, OsABI5-1, OsABI5-2, OsOREB1, OREB1 ,OsSAPK6, OSRK1, OsSnRK2.6, SnRK2.6
22926	0	Chang,P.-F.L., Jinn,T.-L., Huang,W.-K., Chen,Y., Chang,H.-M. and Wang,C.-W.	Induction of a cDNA clone from rice encoding a class II small heat shock protein by heat stress, mechanical injury, and salicylic acid	Plant Sci.	172(1)	64-75	2007	HSP18.0,HSP17.7,HSP16.9A,HSP16.9B,HSP16.9C,HSP17.9A,HSP18.0-CII,HSP17.3	OsHSP18.0-CI, HSP18.0-CI, OsHsp18.0, OsHSP18.0, Oshsp18.0, OsSHSP1, SHSP1, OsMSR3, MSR3, OsHSP20, HSP20, OsHSP18.6, HSP18.6,OsHsp17.7, OsHSP17.4-CI, OsHSP17.7, Oshsp17.7,Oshsp16.9A, OsHsp16.9A, HSP16.9A, OsHSP16.9A-CI,Oshsp16.9B, OsHsp16.9B, HSP16.9B, OsHsp17.0, OsHSP16.9B-CI, OsHSP17.0, Hsp17.0, OsSHSP2, OsSTA3,Oshsp16.9C, OsHsp16.9C, HSP16.9C, OsHSP16.9C-CI, Oshsp 16.9C,Oshsp17.9A, OsHsp17.9A, OsHSP17.9A-CI, Oshsp17.9,OsHSP18.0-CII, Oshsp18.0-CII, OsHSP18.0, OsHSP18.2,OsHsp17.3, OsHSP17.3, Oshsp17.3 
22927	17400897	Chen,R., Zhao,X., Shao,Z., Wei,Z., Wang,Y., Zhu,L., Zhao,J. and Sun,M.	Rice UDP-Glucose Pyrophosphorylase1 Is Essential for Pollen Callose Deposition and Its Cosuppression Results in a New Type of Thermosensitive Genic Male Sterility	Plant Cell	19(3)	847-861	2007	UGP2,UGP1	Ugp2, OsUgp2,Ugp1, OsUgp1, UGP2, UGP3
22928	0	Chen,R., Zhao,X., Shao,Z., Zhu,L. and He,G.	Multiple isoforms of UDP-glucose pyrophosphorylase in rice	Physiol. Plantarum	129(4)	725-736	2007	UGP1,UGP2	Ugp1, OsUgp1, UGP2, UGP3,Ugp2, OsUgp2
22930	17388894	Duan,G.L., Zhou,Y., Tong,Y.P., Mukhopadhyay,R., Rosen,B.P. and Zhu,Y.G.	A CDC25 homologue from rice functions as an arsenate reductase.	New Phytol.	174(2)	311-321	2007	ACR2.2,ACR2.1	CDC25.2, OsACR2.2, OsStr21, STR21,CDC25.1, OsACR2.1, OsStr20, STR20
22932	17163879	Furukawa,T., Maekawa,M., Oki,T., Suda,I., Iida,S., Shimada,H., Takamure,I. and Kadowaki,K.I.	The Rc and Rd genes are involved in proanthocyanidin synthesis in rice pericarp.	Plant J.	49(1)	91-102	2007	RC,RD	Rc, OsbHLH017, OsbHLH17, SD7-1, qSD7-1/qPC7, OsGL3C, GL3C,Rd, DFR, OsDFR, OS-DFR, OsDFR1, DFR1, DFR-1
22934	16990291	Han,M.J., Jung,K.H., Yi,G., Lee,D.Y. and An,G.	Rice Immature Pollen 1 (RIP1) is a Regulator of Late Pollen Development.	Plant Cell Physiol.	47(11)	1457-1472	2006	_	OsWD40-193, RIP1
22936	16720649	Hayakawa,T., Kudo,T., Ito,T., Takahashi,N. and Yamaya,T.	ACT domain repeat protein 7, ACR7, interacts with a chaperone HSP18.0-CII in rice nuclei.	Plant Cell Physiol.	47(7)	891-904	2006	ACR1,ACR6,ACR7,ACR9,ACR8,ACR5	OsACR1,OsACR6,OsACR7,OsACR9,OsACR8,OsACR5
22937	17293362	Hirose,N., Makita,N., Kojima,M., Kamada-Nobusada,T. and Sakakibara,H.	Overexpression of a type-a response regulator alters rice morphology and cytokinin metabolism.	Plant Cell Physiol.	48(3)	523-539	2007	CKX5,RR3,RR8,CKX11,GA2OX3,RR13,GN1A,CKX4,RR12,RR4,PRL5,RR1,RR6,RR5,TMK,RR11,RR7,WRKY71,RR10,RR2	OsCKX5, ckx5,OSRR3, OsRR3, rr3, Rra7, OsRRA7,rr8, OsRR8, Rra13, OsRR15, RR15, OsRRA13,OsCKX11,OsGA2ox3, ga2ox 3, OsGA2ox-3, GA2ox3, GA2ox-3, GA2ox4,OsRR13, Rra12, OsRR12, OsRRA12, RR12,Gn1a, OsCKX2, CKX2, ckx2, Gn1a/OsCKX2, Os CKX2, CKX2/Gn1a,OsCKX4, ckx4, OsSCRM, OsSCRM2, SCRM, SCRM2,OsRR12, Rra11, OsRR8, RR8, OsRRA11,rr4, OsRR4, Rra3, OsRRA3,OsGA20ox4, ga20ox4, GA20ox2, Prl5, Prl5/GA20ox4, OsPrl5,rr1, OsRR1, Rra9, OsRRA9,OsRR6, rr6, Rra6, OsRRA6,rr5, OsRR5, Rra4, OsRRA4,OsTMK,OsRR11, Rra8, OsRRA8, RR8,rr7, OsRR7, Rra5, OsRRA5,OsWRKY71, WRKY-71,OsRR10, Rra2, OsRRA2, RR2,rr2, Osrr2, OsRR2, Rra10, OsRRA10
22939	16919402	Ito,Y. and Kurata,N.	Identification and characterization of cytokinin-signalling gene families in rice.	Gene	382	57-65	2006	RR4,HK5,RR21,HK4,RR7,RR25,AHP2,RR26,AHP1,RR12,CKT1,HK2,RR9,DLC1,CRL4,RR23,HST1,RR8,RR11,RR13,EF1,HK3,RR5,RR6,RR1,RR3,RR10,RR2	rr4, OsRR4, Rra3, OsRRA3,OHK3, HK, OsHK5, Crl3, Ohk3, OsHK2,OsRR21, Rrb1, Orr1, OsRR19, RR19, OsRRB1, ORR1,OHK4, HK, OsHK4, Crl1b, Ohk4,rr7, OsRR7, Rra5, OsRRA5,OsRR25, Rrb3, Orr5, OsORR5, OsRR21, OsRRB3,OHP2, HPt, OsAHP2 Hpt3, Ohp2, OsHP1, HP1, OsHpt3, OsHP01,OsRR26, Rrb6, Orr6, OsRR16, RR16, OsRRB6,OHP1, HPt, OsAHP1, Hpt2, Ohp1, OsHP2, HP2, OsHpt2, OsHPt2, OsHP02,OsRR12, Rra11, OsRR8, RR8, OsRRA11,OHK5, HK, OsHK6, HK6, Crl1a, Ohk5, OsHK1, OsCKT1 ,OHK1, HK, OsHK2, Ohk1,OsRR9, Rra1, OsRRA1, OsRR10, RR10,RR24, OsRR24, Rrb2, Orr4, OsRR17, RR17, OsRRB2, OsRR24/LEPTO1, OsLEPTO1, LEPTO1, OsDLC1,CHARK, S/T kinase, OsCRL4, OsHKL1, OsCDP,OsRR23, Rrb5, Orr3, OsRR18, RR18, OsRRB5,RR22, OsRR22, Rrb4, Orr2, OsRR20, OsRRB4, OsHST1,rr8, OsRR8, Rra13, OsRR15, RR15, OsRRA13,OsRR11, Rra8, OsRRA8, RR8,OsRR13, Rra12, OsRR12, OsRRA12, RR12,Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,OHK2, HK, OsHK3, Ohk, Crl2, Ohk2, OsHK3b, OsHK03,rr5, OsRR5, Rra4, OsRRA4,OsRR6, rr6, Rra6, OsRRA6,rr1, OsRR1, Rra9, OsRRA9,OSRR3, OsRR3, rr3, Rra7, OsRRA7,OsRR10, Rra2, OsRRA2, RR2,rr2, Osrr2, OsRR2, Rra10, OsRRA10
22941	16906405	Janni,M., M., Roberti,S., Capodicasa,C. and D'Ovidio,R.	Characterization of expressed Pgip genes in rice and wheat reveals similar extent of sequence variation to dicot PGIPs and identifies an active PGIP lacking an entire LRR repeat.	Theor. Appl. Genet.	113(7)	1233-1245	2006	PGIP3,PGIP4,PGIP1,PGIP2	Ospgip3, pgip3, OsPGIP3,Ospgip4, pgip4, OsPGIP4,Ospgip1, pgip1, OsPGIP1,Ospgip2, pgip2, OsPGIP2
22943	17376611	Kang,S.G., Jeong,H.K., Lee,E. and Natarajan,S.	Characterization of a lipoate-protein ligase A gene of rice (Oryza sativa L.).	Gene	393(1-2)	53-61	2007		
22944	17218330	Katou,S., Kuroda,K., Seo,S., Yanagawa,Y., Tsuge,T., Yamazaki,M., Miyao,A., Hirochika,H. and Ohashi,Y.	A Calmodulin-Binding Mitogen-Activated Protein Kinase Phosphatase is Induced by Wounding and Regulates the Activities of Stress-Related Mitogen-Activated Protein Kinases in Rice.	Plant Cell Physiol.	48(2)	332-344	2007	_,MPK6,MPK3,GSN1,_,_,_	OsIBR5, IBR5, OsPP85,OsMPK6,OsMPK3,MKP1, OsMKP1, osmkp1, LARGE8, GLA1, OsGLA1,OsPHS1a, OsPP3,OsDsPTP1, OsPP6,OsPHS1b, OsPP4, OsSTA14
22945	0	Kim,J.H., Yang,D.H., Kim,J.S., Baek,M.H., Park,Y.M., Wi,S.G., Cho,J.Y. and Chung,B.Y.	Cloning, characterization, and expression of two cDNA clones for a rice ferulate-5-hydroxylase gene, a cytochrome P450-dependent monooxygenase	J. Plant Biol.	49(3)	200-204	2006	_,F5HL2	OsF5HL, F5HL, CYP84A7 ,OsF5HL2, CYP84A6, OsCYP84A6, OsF5H1, F5H1, OsCYP71AB10, CYP71AB10
22946	17148693	Kubota,Y., Miyao,A., Hirochika,H., Tozawa,Y., Yasuda,H., Tsunoyama,Y., Niwa,Y., Imamura,S., Shirai,M. and Asayama,M.	Two Novel Nuclear Genes, OsSIG5 and OsSIG6, Encoding Potential Plastid Sigma Factors of RNA Polymerase in Rice: Tissue-Specific and Light-Responsive Gene Expression.	Plant Cell Physiol.	48(1)	186-192	2007	SIG5,SIG6,SIG3	OsSIG5, OsSig5, Os Sig5,OsSIG6, OsSig6,OsSIG3
22949	0	Lin,R., Zhao,W., Meng,X., Wang,M. and Peng,Y.	Rice gene OsNAC19 encodes a novel NAC-domain transcription factor and responds to infection by Magnaporthe grisea	Plant Sci.	172(1)	120-130	2007	ONAC2,NAC5,NAC3,NAC4	SNAC1, snac1, OsNAC9, ONAC002, ONAC2, ONAC033, ONAC33, ONAC043, ONAC43, ONAC044, ONAC44, OsNAC19, NAC19, SNAC1/ONAC002, OsSNAC1, OsNAC9, OsNAC1,OsNAC5, NAC71, ONAC071, ONAC009, ONAC9, ONAC020, ONAC20, OnNAC5*, OnNAC5, OsNAC5/ONAC009,OsNAC3, NAC67, ONAC067, OnNAC3*, OsNAC3/ONAC067, DLN180, OsDLN180,OsNAC4, NAC68, ONAC068, OnNAC4*, OnNAC4, OsNAC4/ONAC068
22950	17216230	Lin,Z., Griffith,M.E., Li,X., Zhu,Z., Tan,L., Fu,Y., Zhang,W., Wang,X., Xie,D. and Sun,C.	Origin of seed shattering in rice (Oryza sativa L.).	Planta.	226(1)	11-20	2007	SH4	sh4, SH4, SHAT2, SHA1, qSH4, QSH4, OsSh4, Sh4, Osh4, OsMSL23, MSL23
22953	17364810	Mahmood,T., Hyder,M.Z. and Naqvi,S.M.S.	Cloning and sequence analysis of germin-like protein gene 2 promoter from Oryza sativa L. ssp. indica	DNA Seq.	18(1)	26-32	2007	GER6	OsGLP8-7, GLP8-7, OsGER6, OsRGLP2, RGLP2, OsCDP8.7, CDP8.7
22955	17022177	Mei,C., Qi,M., Sheng,G. and Yang,Y.	Inducible overexpression of a rice allene oxide synthase gene increases the endogenous jasmonic acid level, PR gene expression, and host resistance to fungal infection.	Mol. Plant Microbe Interact.	19(10)	1127-1137	2006	PR10A,AOS2	PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsAOS2, CYP74A2, OsAOS, OsAOS1
22956	17327258	Mimida,N., Kitamoto,H., Osakabe,K., Nakashima,M., Ito,Y., Heyer,W.D., Toki,S. and Ichikawa,H.	Two Alternatively Spliced Transcripts Generated from OsMUS81, a Rice Homolog of Yeast MUS81, Are Up-Regulated by DNA-Damaging Treatments.	Plant Cell Physiol.	48(4)	648-654	2007	RAD54,_	OsRAD54, OsRad54, CHR733, OsCHR733,OsMUS81, OsMUS81alpha, OsMUS81beta, ERCC4
22958	0	Niu,Y., Chen,K., Wang,J., Liu,X., Qin,H., Zhang,A. and Wang,D.	Molecular and Functional Characterization of Sphingosine-1-Phosphate Lyase Homolog from Higher Plants	J. Integr. Plant Biol.	49(3)	323-335	2007	_	OsSPL, OsSPL1
22961	16956633	Peters,R.J.	Uncovering the complex metabolic network underlying diterpenoid phytoalexin biosynthesis in rice and other cereal crop plants.	Phytochemistry	67(21)	2307-2317	2006	KS4,KSL10,KS8,KS7,KS1	OsKS4, KS4, KSL4, OsKSL4, DTS2, OsDTS2, OsTPS16, TPS16, TPS8, OsTPS8,OsKSL10, KS10, OsKS10, OsTPS33, TPS33, TPS21, OsTPS21,OsKS8, KS8, KSL8, OsKSL8, DTC2, OsDTC2, OsDTC2/OsKS8, OsTPS32, TPS17, OsTPS17, KSL11, OsKSL11,OsKS7, KS7, KSL7, OsKSL7, DTC1, OsDTC1, OsKS3, OsDTC1/OsKS7, OsTPS6, TPS6, TPS38, OsTPS38,OsKS1, KS1, KS1A, KSL1, OsKSL1, OsKS1A, OsKS1B, OsKS1C, Ks1, Os KS1, OsTPS26, TPS6, OsTPS6
22965	17205969	Saika,H., Okamoto,M., Miyoshi,K., Kushiro,T., Shinoda,S., Jikumaru,Y., Fujimoto,M., Arikawa,T., Takahashi,H., Ando,M., Arimura,S., Miyao,A., Hirochika,H., Kamiya,Y., Tsutsumi,N., Nambara,E. and Nakazono,M.	Ethylene Promotes Submergence-Induced Expression of OsABA8ox1, a Gene that Encodes ABA 8'-Hydroxylase in Rice.	Plant Cell Physiol.	48(2)	287-298	2007	ABA1,ABA8OX2,NCED2,ABA8OX3,ABA8OX1,NCED3	OsABA1, Zep1, OsAba1, Aba2, OsAba2, OsZep1, Zep, OsZep, Aba1, OsABA2, Osaba1, OsZEP-1, OsZEP, OSZEP1, ZEP1, ZEP,OsABA8OX2, OsABA8ox2, CYP707A6, OsCYP707A6, OsAba-ox2, OsABA8ox2, OsABA8OH2, ABA8OH2, ABA8'-OH2, OsABA8'ox2, ABA8'ox2, OsABAX2, ABAX2, OsABA8'OH2, ABA8'OH2,OSNCED2, OsNCED2, OsNCED5, NCED5,OsABA8OX3, OsABA8ox3, CYP707A7, OsCYP707A7, OsAba-ox3, OsABA8ox3, OsABA8'ox3, ABA8'ox3, OsABAX3, ABAX3, OsABA8'OH3, ABA8'OH3,OsABA8OX1, CYP707A5, OsCYP707A5, ABA8ox1, OsABA8ox1, OsABA8'OH1, ABA8'OH1 ,OSNCED3, OsNCED-3, OsNCED3, OsNCED3a, NCED3a, OsNCED4, NCED4, OsNECD2, OsNCED2b, NCED2b 
22966	16369540	Sakamoto,T., Morinaka,Y., Ohnishi,T., Sunohara,H., Fujioka,S., Ueguchi-Tanaka,M., Mizutani,M., Sakata,K., Takatsuto,S., Yoshida,S., Tanaka,H., Kitano,H. and Matsuoka,M.	Erect leaves caused by brassinosteroid deficiency increase biomass production and grain yield in rice.	Nat. Biotechnol.	24(1)	105-109	2005	DWARF4,DWARF4L,D11,BRD1,CPD1	OsDWARF4, osdwarf4, OsDWF4, DWF4, CYP90B2, OsCYP90B2, D4, OsD4,OsDWARF4L,d11(d8), dwf10, d8, D11/CYP724B1, d11, CYP724B1, GNS4, OsD11, PMM1, OsPMM1, PMM1/D11, NBG4, OsCPB1, CPB1, CPB1/D11,brd1, OsDWARF, DWARF, OsBR6ox, BR6ox, CYP85A1, CYP85A4, OsDWF, CYP85A1/OsDWARF, OsBRD1, OsCYP85A1,OsCPD1, CYP90A3, CYP90A3/OsCPD1, CPD, OsCPD2, CPD2
22967	17216479	Shi,Z., Wang,J., Wan,X., Shen,G., Wang,X. and Zhang,J.	Over-expression of rice OsAGO7 gene induces upward curling of the leaf blade that enhanced erect-leaf habit.	Planta.	226(1)	99-108	2007	SHL4	shl4, sh4, OsAGO7, SHO2, AGO7, SHL4/SHO2
22969	17082902	Su,W., Ma,H., Liu,C., Wu,J. and Yang,J.	Identification and characterization of two rice autophagy associated genes, OsAtg8 and OsAtg4.	Mol. Biol. Rep.	33(4)	273-278	2006	ATG8,ATG4	Atg8, OsAtg8, APG8, OsATG8a, Atg8a,Atg4, OsAtg4, APG4, Atg4b, OsATG4b 
22970	17056620	Suzaki,T., Toriba,T., Fujimoto,M., Tsutsumi,N., Kitano,H. and Hirano,H.Y.	Conservation and Diversification of Meristem Maintenance Mechanism in Oryza sativa: Function of the FLORAL ORGAN NUMBER2 Gene.	Plant Cell Physiol.	47(12)	1591-1602	2006	FON2,FON1	fon2, OsFON2, FON4, OsFON4, FON2/FON4, TG1,OsFON1, fon1, OsRLCK219, RLCK219
22973	16971692	Ueda,M., Fujimoto,M., Arimura,S., Tsutsumi,N. and Kadowaki,K.	Evidence for Transit Peptide Acquisition through Duplication and Subsequent Frameshift Mutation of a Preexisting Protein Gene in Rice.	Mol. Biol. Evol.	23(12)	2405-2412	2006	_,_,_,_	mt rpl13, mt RPL13,ppr564, PPR564,orf160, ORF160,cp rpl13, cp RPL13, WLP1, RPL13
22975	17172358	Wang,Y.S., Pi,L.Y., Chen,X., Chakrabarty,P.K., Jiang,J., A.L., Liu,G.Z., Li,L., Benny,U., Oard,J., Ronald,P.C. and Song,W.Y.	Rice XA21 Binding Protein 3 Is a Ubiquitin Ligase Required for Full Xa21-Mediated Disease Resistance	Plant Cell	18(12)	3635-3646	2006	XB3,_,_,_,_,XBOS36,_,XA21	Xb3,  OsRING223, RING223,XBOS32,  OsRING345, RING345,XBOS34,  OsRING270, RING270,XBOS35,  OsRING350, RING350,XBOS31, OsRFPHC-7,  OsRING222, RING222,OsXBOS36,  OsRING3, RING3,XBOS33,  OsRING346, RING346,Xa21*, Xa21, OsXA21
22976	16896530	Wu,C., Zhou,S., Zhang,Q., Zhao,W. and Peng,Y.	Molecular cloning and differential expression of an gamma-aminobutyrate transaminase gene, OsGABA-T, in rice (Oryza sativa) leaves infected with blast fungus.	J. Plant Res.	119(6)	663-669	2006	_,GABA-T	OsGABA-T, GABA-T,Osl2, l2, OsGABA-T
22977	16932879	Xiang,Y., Cao,Y., Xu,C., Li,X. and Wang,S.	Xa3, conferring resistance for rice bacterial blight and encoding a receptor kinase-like protein, is the same as Xa26.	Theor. Appl. Genet.	113(7)	1347-1355	2006	XA3	Xa-3, Xa3 (Xa4b, Xa6, Xa9, Xa w), Xa3, Xaw, Xa6, Xa9, Xa4-b, XA26, Xa26(t), Xa26(t)*, Xa26, RKb, MRKb, MRKB, TRKb, Xa3/Xa26
22979	0	Yang,D.H., Chung,B.Y., Kim,J.S., Kim,J.H., Yun,P.Y., Lee,Y.K., Lim,Y.P. and Lee,M.C.	cDNA Cloning and Sequence Analysis of the Rice Cinnamate-4-Hydroxylase Gene, a Cytochrome P450-Dependent Monooxygenase Involved in the General Phenylpropanoid Pathway	J. Plant Biol.	48(3)	311-318	2005	_,C4H2	OsLTP1.18, OsLTP1, nsLTP1, a15, OsLtpI.18, LTPC2, OsLTPC2,OsC4H, OsC4HL, C4H, OsC4H2
22980	17022939	Yang,S.-H. and Choi,D.	Characterization of genes encoding ABA 8'-hydroxylase in ethylene-induced stem growth of deepwater rice (Oryza sativa L.)	Biochem. Biophys. Res. Commun.	350(3)	685-690	2006	ABA8OX1,ABA8OX2	OsABA8OX1, CYP707A5, OsCYP707A5, ABA8ox1, OsABA8ox1, OsABA8'OH1, ABA8'OH1 ,OsABA8OX2, OsABA8ox2, CYP707A6, OsCYP707A6, OsAba-ox2, OsABA8ox2, OsABA8OH2, ABA8OH2, ABA8'-OH2, OsABA8'ox2, ABA8'ox2, OsABAX2, ABAX2, OsABA8'OH2, ABA8'OH2
22981	17056618	Yoshida,K. and Komae,K.	A Rice Family 9 Glycoside Hydrolase Isozyme with Broad Substrate Specificity for Hemicelluloses in Type II Cell Walls.	Plant Cell Physiol.	47(11)	1541-1554	2006	CEL9A	OsCel9A, OsGH9C3, GH9C3, OsGLU5, Cel9A 
22982	17056619	Yoshida,K., Imaizumi,N., Kaneko,S., Kawagoe,Y., Tagiri,A., Tanaka,H., Nishitani,K. and Komae,K.	Carbohydrate-Binding Module of a Rice Endo-{beta}-1,4-glycanase, OsCel9A, Expressed in Auxin-Induced Lateral Root Primordia, is Post-Translationally Truncated.	Plant Cell Physiol.	47(11)	1555-1571	2006	CEL9D,CEL9A	OsCel9D, Cel9D, OsGLU1, OsGH9A1, GH9A1,OsCel9A, OsGH9C3, GH9C3, OsGLU5, Cel9A 
22983	16915519	Zhang,H., Li,J., Yoo,J.H., Yoo,S.C., Cho,S.H., Koh,H.J., Seo,H.S. and Paek,N.C.	Rice Chlorina-1 and Chlorina-9 encode ChlD and ChlI subunits of Mg-chelatase, a key enzyme for chlorophyll synthesis and chloroplast development.	Plant Mol. Biol.	62(3)	325-337	2006	CHL1,CHL9	chl1, chl1(ch1), ch1,chl9
22984	17073304	Zhou,B., Qu,S., Liu,G., Dolan,M., Sakai,H., Lu,G., Bellizzi,M. and Wang,G.L.	The eight amino-acid differences within three leucine-rich repeats between Pi2 and Piz-t resistance proteins determine the resistance specificity to Magnaporthe grisea.	Mol. Plant Microbe Interact.	19(11)	1216-1228	2006	PI9,PIZ5,PIZ,PIZT	Pi9(t), Pi9(t)*, Pi9, Pi-9(t),Piz-5, Pi-z5, Piz5, Pi-2(t), Pi-2, Pi2,Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2,Piz-t, Pi-zt, Pi-z(t), Pi2/Pizt, Pizt, Pi9, OsPiz-t
22985	16463105	Zhou,H.L., He,S.J., Cao,Y.R., Chen,T., Du,B.X., Chu,C.C., Zhang,J.S. and Chen,S.Y.	OsGLU1, a putative membrane-bound endo-1,4-beta-D-glucanase from rice, affects plant internode elongation.	Plant Mol. Biol.	60(1)	137-151	2006	CEL9D,GLU	OsCel9D, Cel9D, OsGLU1, OsGH9A1, GH9A1,OsGLU
30000		H. KUROSITA, J-I. ITOH and Y. NAGATO	FLATTENED SHOOT MERISTEM is required for shoot meristem maintenance in rice.	RGN	22	52-53	2005	FSM	fsm
30001		M. ABE, J-I. ITOH and Y. NAGATO	wavy leaf 1 causes depressed growth of above- and under-ground organs in rice.	RGN	22	50-51	2005	WAF1	OsWAF1, waf1, waf1-1, waf1-2, HEN1, OsHEN1
30020	10527416	Hwang YS, Thomas BR, Rodriguez RL.	Differential expression of rice alpha-amylase genes during seedling development under anoxia.	Plant Mol. Biol.	40(6)	911-920	1999	AMY1A,AMY3D,AMY1B,AMY2A,AMY3C,AMY3B,AMY1C,AMY3A,AMY3E	Amy1A/C*(RAmy1A/C), alpha Amy7, AMY1.1, Amy1A, RAmy1A/C, Amy1A/C*, Amy1, Amy1A_C, OsAmy1A, alphaAmy7-C, RAmy1A, AmyI-1, OsAmyI-1, OsRamy1A,Amy3D/E*(RAmy3D/E), alpha Amy3, AmyII-4, AMY1.3, Amy3D, Amy3D/E*, RAmy3D/E, Amy3D_E, Amy8, aAmy3, RAmy3D, OsAmy3D, alphaAmy3, OsRamy3D,Amy1B*(RAmy1B), AMYC, RAmy1B, Amy2, Amy1B, Osamy-c, OSamy-c, OSamy--c ,Amy2A*(RAmy2A), AMY1.5, AMYC2, RAmy2A, Amy4, Amy2A,Amy3A/B/C*(RAmy3A/B/C), AmyII-6, AMY1.7, Amy3C, RAmy3A/B/C, Amy3A/B/C*, Amy7, AMY3B, RAmy3C, OsAmy3B,Amy3A/B/C*(RAmy3A/B/C), alpha Amy6, AmyII-5, AMY1.6, Amy1.6, Amy3B, BRAmy3A/B/C, Amy3A/B/C*, Amy6, RAmy3B, alphaAmy6-C, OsRamy3B, OsAmy3C,Amy1A/C*(RAmy1A/C), alpha Amy10, Amy1C, RAmy1A/C, Amy1A/C*, Amy3, RAmy1C, OsAmy1C, alphaAmy10-C,Amy3A/B/C*(RAmy3A/B/C), Amy3A, RAmy3A/B/C, Amy3A/B/C*, AMY1.2, Amy5, RAmy3A, OsEnS-129,Amy3D/E*(RAmy3D/E), alpha Amy8, alphaAmy8, AmyII-3, AMY1.4, Amy3E, Amy3D/E*, RAmy3D/E, Amy9, RAmy3E, alphaAmy8-C, AMY3E/AMY1.4, OsAmy3E, OsRamy3E
30023		A. YOSHIMURA, N. TAKANO-KAI and C. ANNO	Linkage mapping of genes for short panicle and awn in rice.	RGN	21	17-19	2004	AN6,SP2(T)	An6, An6(t), An6*,sp2(t), sp2
30025		A. Yoshimura and Y. Nagato	A. Report of the Committee on Gene Symbolization, Nomenclature and Linkage Groups.	RGN	22	6-8	2005	EF1,APD1,DBS1,OVC,CRL1,PLA2	Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,apd1, apd1*,dbs1,Ovc, Ovc(t),crl1, crl1*, ARL1, ARL1/CRL1, OsLBD3-2, LBD3-2, OsCRL1,pla2, pla2(pla2-1, pla2-2), plt2, LHD2, OsLHD2
30027	9869417	Kumpatla SP, Hall TC.	Longevity of 5-azacytidine-mediated gene expression and re-establishment of silencing in transgenic rice.	Plant Mol. Biol.	38(6)	1113-1122	1998	BAR	bar
30028	16927205	Pan,G., Zhang,X., Liu,K., Zhang,J., Wu,X., Zhu,J. and Tu,J.	Map-based cloning of a novel rice cytochrome P450 gene CYP81A6 that confers resistance to two different classes of herbicides.	Plant Mol. Biol.	61(6)	933-943	2006	BEL	bel, bel-a(8077S), bel-b(=bsl, Norin8m), CYP81A6, OsCYP81A6, OsCYP81Q32, CYP81Q32, OsCYP71U8, CYP71U8
30029	15907692	Jung YH, Lee JH, Agrawal GK, Rakwal R, Kim JA, Shim JK, Lee SK, Jeon JS, Koh HJ, Lee YH, Iwahashi H, Jwa NS.	The rice (Oryza sativa) blast lesion mimic mutant, blm, may confer resistance to blast pathogens by triggering multiple defense-associated signaling pathways.	Plant Physiol. Biochem.	43(4)	397-406	2005	BLM	blm (=bl2)
30030		Sun L, Su C, Wang C, Zhai H, Wan J.	Mapping of a Major Resistance Gene to the Brown Planthopper in the Rice Cultivar Rathu Heenati	Breeding Science	55(4)	391-396	2005	BPH17	Bph17
30031	16240104	Jena KK, Jeung JU, Lee JH, Choi HC, Brar DS.	High-resolution mapping of a new brown planthopper (BPH) resistance gene, Bph18(t), and marker-assisted selection for BPH resistance in rice (Oryza sativa L.).	Theor. Appl. Genet.	112(2)	288-297	2006	BPH9	Bph9, BPH9/26, Bph26(t), BPH26, Bph18(t), BPH18
30032	16395578	Chen JW, Wang L, Pang XF, Pan QH.	Genetic analysis and fine mapping of a rice brown planthopper (Nilaparvata lugens Stal) resistance gene bph19(t).	Molecular Genetics & Genomics (Molecular General Genetics up to 2001)	275(4)	321-329	2006	BPH19	bph19(t)
30033	15994910	Hong Z, Ueguchi-Tanaka M, Fujioka S, Takatsuto S, Yoshida S, Hasegawa Y, Ashikari M, Kitano H, Matsuoka M.	The Rice brassinosteroid-deficient dwarf2 mutant, defective in the rice homolog of Arabidopsis DIMINUTO/DWARF1, is rescued by the endogenously accumulated alternative bioactive brassinosteroid, dolichosterone.	Plant Cell	17(8)	2243-2254	2005	BRD2	brd2, OsBRD2, Dim/dwf1, Dim, dwf1, OsDWF1, DWF1, LTBSG1, OsLTBSG1, LHDD10, OsLHDD10, OsD-LDH3, D-LDH3
30034		LIU Qiu-hua,LU Zuo-mei	Molecular mapping for bentazon suscptible lethality gene in rice cultiva Nonglin 8m	J. Nanjing Agri. Univ.	27(4)	17-19,	2004	BEL	bel, bel-a(8077S), bel-b(=bsl, Norin8m), CYP81A6, OsCYP81A6, OsCYP81Q32, CYP81Q32, OsCYP71U8, CYP71U8
30037	9880342	Lorbiecke R, Sauter M.	Adventitious root growth and cell-cycle induction in deepwater rice	Plant Physiol.	119(1)	21-30	1999	CDC2-2,CYCA1;3,CDC2-1,CYCB2;1,CYCB2;2	cdc2Os-2, CDC2Os-2, CDKA-2, CDKA;2, Orysa;CDKA;2, Rcdc2-2, OsCDKA;2, OsCDKA2, CDKA2, CDKA;1, OsCDKA;1, CDC20S-2, OsCDC20S-2,cycA1;3, CycA1;3, CYCA1-3,cdc2Os-1, CDC2Os-1, CDKA-1, CDKA;1, Orysa;CDKA;1, OsCDKA;1, cdc2Os1, Rcdc2-1, OsCDKA1, CDKA1, CDC20S-1, OsCDC20S-1 ,cycB2;1 (=cycOs1), cycB2;1, cycOs1, CycB2;1, CycOs1, CYCB2-1, CYCOS1, CycB2-Os1, CYCB2, CycB2;os;1, Orysa;CycB2;1, CycB2;os;1, OsCycB2;1,cycB2;2 (=cycOs2), cycB2;2, cycOs2, CycB2;2, CycOs2, CYCB2-2, CYCOS2, CycB2-Os2, CYCB2, CycB2;os;2, OsCycB2;2, Orysa;CycB2;2, OsCYCOS2, Os;cycB2;2, CYCB2.2, OsCYCB2.2
30038	12913143	Takahashi A, Kawasaki T, Wong HL, Suharsono U, Hirano H, Shimamoto K.	Hyperphosphorylation of a mitochondrial protein, prohibitin, is induced by calyculin A in a rice lesion-mimic mutant cdr1.	Plant Physiol.	132(4)	1861-1869	2003	CDR1,PHB1	cdr1, cdr1*,OsPHB1
30044	15159627	Day RB, Tanabe S, Koshioka M, Mitsui T, Itoh H, Ueguchi-Tanaka M, Matsuoka M, Kaku H, Shibuya N, Minami E.	Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.	Plant Mol. Biol.	54(2)	261-272	2004	CIGR1,CIGR2	OsCIGR1, OsGRAS-34, OsGRAS34, GRAS-34, GRAS34,OsCIGR2, OsGRAS-36, OsGRAS36, GRAS-36, GRAS36
30049	16574854	Keegstra K, Walton J.	Plant science. Beta-glucans--brewer's bane, dietician's delight.	Science	311(5769)	1872-1873	2006	CSLF	Csl,OsCslF
30054		Maekawa M, Takamure I, Ahmed N, Kyozuka J.	Bunketsu-waito, One of the Tillering Dwarfs, is Controlled by a Single Recessive Gene in Rice (Oryza sativa L.)	Breeding Science	55(2)	193-196	2005	D5,D4,D3	d5, dwf5,d4, dwf4,d3, dwf3, D3/OsMAX2, Os_F0760, SOL1, OsORE9, ORE9, MAX2, OsRFPH2-10, RFPH2-10, OsD3,  OsFBL27, FBL27
30058	16714407	Morinaka Y, Sakamoto T, Inukai Y, Agetsuma M, Kitano H, Ashikari M, Matsuoka M.	Morphological alteration caused by brassinosteroid insensitivity increases the biomass and grain production of rice.	Plant Physiol.	141(3)	924-931	2006	D61	d61*, dwf42, d61, OsBRI1, OSBRI1, BRI1, Os BRI1, Osbri1, OsBRKq1, BRKq1
30061	16040652	Komorisono M, Ueguchi-Tanaka M, Aichi I, Hasegawa Y, Ashikari M, Kitano H, Matsuoka M, Sazuka T.	Analysis of the rice mutant dwarf and gladius leaf 1. Aberrant katanin-mediated microtubule organization causes up-regulation of gibberellin biosynthetic genes independently of gibberellin signaling.	Plant Physiol.	138(4)	1982-1993	2005	DGL1	dgl1, dgl1-1, dgl1-2, dgl1-3
30063		Khun LH, Motomura K, Murayama S, Adaniya S, Nose A.	Trisomic Analysis of a Lateness Gene ef2 in Rice, Oryza sativa L.	Breeding Science	55(1)	35-39	2005	EF2	ef2 (=lf-1), ef2(t) (lf1), lf1, ef2
30064		Khun LH, Motomura K, Murayama S, Adaniya S, Nose A.	Linkage Analysis of a Lateness Gene ef4 in Rice, Oryza sativa L.	Breeding Science	55(2)	231-235	2005	EF4	ef4, ef4(t)
30065		Khun LH,Hiraiwa M, Sato S, Motomura K, Murayama S, Adaniya S, Nose A, Ishimine Y.	Location of New Gene for Late Heading in Rice, Oryza sativa L. Using Interchange Homozygotes	Breeding Science	54(3)	259-263	2004	EF5	ef5, ef5*
30067	15010620	Lertpiriyapong K, Sung ZR.	The elongation defective1 mutant of Arabidopsis is impaired in the gene encoding a serine-rich secreted protein.	Plant Mol. Biol.	53(4)	581-595	2003	ELD1	eld1-1, KOB1
30068		Kondou H, Ooka H, Yamada H, Satoh K, Kikuchi S, Takahara Y, Yamamoto K.	Microarray Analysis of Gene Expression at Initial Stages of Rice Seed Development	Breeding Science	56(3)	235-242	2006	ENL	enl
30069	15338279	Xu YH, Zhu YY, Zhou HC, Li Q, Sun ZX, Liu YG, Lin HX, He ZH.	Identification of a 98-kb DNA segment containing the rice Eui gene controlling uppermost internode elongation, and construction of a TAC transgene sublibrary.	Molecular Genetics & Genomics (Molecular General Genetics up to 2001)	272(2)	149-155	2004	EUI1	eui1, GA16,17ox, CYP714D1, EUI, CYP714D1/EUI, OsEUI, LG5, OsLG5
30070	16463101	Ma H, Zhang S, Ji L, Zhu H, Yang S, Fang X, Yang R.	Fine mapping and in silico isolation of the EUI1 gene controlling upper internode elongation in rice.	Plant Mol. Biol.	60(1)	87-94	2006	EUI1	eui1, GA16,17ox, CYP714D1, EUI, CYP714D1/EUI, OsEUI, LG5, OsLG5
30071		M. KUSABA, S. IIDA, R. MORITA and N. NISHIMURA	Mapping of the EARLY YELLOWING 1 gene, EYE1 in rice.	RGN	21	9-10	2004	EYE1	eye1
30072	15928962	Wang GW, He YQ, Xu CG, Zhang Q.	Identification and confirmation of three neutral alleles conferring wide compatibility in inter-subspecific hybrids of rice (Oryza sativa L.) using near-isogenic lines.	Theor. Appl. Genet.	111(4)	702-710	2005	F6,S5,F5	f6, f6-Du, S5, S5-08,S5,f5, f5-Du, Sb, S24
30073	16317572	Wang GW, He YQ, Xu CG, Zhang Q.	Fine mapping of f5-Du, a gene conferring wide-compatibility for pollen fertility in inter-subspecific hybrids of rice (Oryza sativa L.).	Theor. Appl. Genet.	112(2)	382-387	2006	F5	f5, f5-Du, Sb, S24
30074	15941402	Kang HG, Park S, Matsuoka M, An G.	White-core endosperm floury endosperm-4 in rice is generated by knockout mutations in the C-type pyruvate orthophosphate dikinase gene (OsPPDKB).	Plant J.	42(6)	901-911	2005	FLO1,FLO4	flo1, flo1-1, o,FLO4-4, flo4, flo4-2, flo4-3, ppdk, OsPPDK, PPDK1, CPDK1, PPDKB, OsPPDKB, cyOsPPDKB, OsPBDK, PBDK, osppdkb, PPD, cyPPDK, chPPDKB, chOsPPDKB
30080	10394940	Washida H, Wu CY, Suzuki A, Yamanouchi U, Akihama T, Harada K, Takaiwa F.	Identification of cis-regulatory elements required for endosperm expression of the rice storage protein glutelin gene GluB-1.	Plant Mol. Biol.	40(1)	1-12	1999	GLUB1	GluB1, GluB1-A, GluB-1a, GluB-1, OsGluB1, GluB-1b, OsGluB-1b, GLUB1B
30081	12602898	Nishizawa Y, Saruta M, Nakazono K, Nishio Z, Soma M, Yoshida T, Nakajima E, Hibi T.	Characterization of transgenic rice plants over-expressing the stress-inducible beta-glucanase gene Gns1.	Plant Mol. Biol.	51(1)	143-152	2003	GNS1	OsPR2, PR2, Gns1, OsGNS1, OsEGL1
30082	16770601	Tian F, Zhu Z, Zhang B, Tan L, Fu Y, Wang X, Sun CQ.	Fine mapping of a quantitative trait locus for grain number per panicle from wild rice (Oryza rufipogon Griff.).	Theor. Appl. Genet.	113(4)	619-629	2006	GPA7	gpa7
30086	16835766	Fujita D, Doi K, Yoshimura A, Yasui H.	Molecular mapping of a novel gene, Grh5, conferring resistance to green rice leafhopper (Nephotettix cincticeps Uhler) in rice, Oryza sativa L.	Theor. Appl. Genet.	113(4)	567-573	2006	GRH5	Grh5
30087	15618434	Tsukamoto S, Morita S, Hirano E, Yokoi H, Masumura T, Tanaka K.	A novel cis-element that is responsive to oxidative stress regulates three antioxidant defense genes in rice.	Plant Physiol.	137(1)	317-327	2005	GRX,SODCC1,TRXH	grx, OsGRX, OsGRX14, OsGrx9, OsGrxC2;2, GrxC2;2, OsGrxC2.2, GrxC2.2,sodCc1, SODCC.1, sodA, RSODA, OsSOD1, OsCSD2, OsSodA, SodCc2, OsSODA1, SODCc1-Cu/Zn, OsCu/Zn-SOD2, Cu/Zn-SOD2, OsCSD1.2, CSD1.2, OsSODCc1-Cu/Zn, SODCc1-Cu/Zn, CuZnSOD1, Cu/ZnSOD1, OsCu/ZnSOD1, OsCSD4, CDS4, CuZnSOD4, OsCuZnSOD1, OsCSD1, CSD1, OsSOD2,trxh, Trx-H, OsTRXh1, TRXh1, OsTrxh1, Os1, OsTrx23, Trx23, RPP13-1
30088	10949377	Hoshida H, Tanaka Y, Hibino T, Hayashi Y, Tanaka A, Takabe T, Takabe T.	Enhanced tolerance to salt stress in transgenic rice that overexpresses chloroplast glutamine synthetase.	Plant Mol. Biol.	43(1)	103-111	2000	GS2	OsGS2, GLN2, OsGLN2, RGS31, OsRGS31
30092	17092317	Zou J, Zhang S, Zhang W, Li G, Chen Z, Zhai W, Zhao X, Pan X, Xie Q, Zhu L.	The rice HIGH-TILLERING DWARF1 encoding an ortholog of Arabidopsis MAX3 is required for negative regulation of the outgrowth of axillary buds.	Plant J.	48(5)	687-696	2006	D17,CCD8A,D3	d17(t), dwf14, d17, htd1, OsCCD7, CCD7, D17/HTD1, HTD1, OsHTD1, OsD17,OsCCD8a, OsCCD8c, CCD8a, CCD8c,d3, dwf3, D3/OsMAX2, Os_F0760, SOL1, OsORE9, ORE9, MAX2, OsRFPH2-10, RFPH2-10, OsD3,  OsFBL27, FBL27
30093		S. Fukuoka, M.C.V. Newingham, M. Ishtiaq, T. nagamine, M. Kawase and K. Okuno	Identification and mapping of two new loci for hybrid breakdown in cultivated rice.	RGN	22	29-31	2005	HWG2,HWG1	hwg2(t),hwg1(t)
30101	16623909	Furutani I, Sukegawa S, Kyozuka J.	Genome-wide analysis of spatial and temporal gene expression in rice panicle development.	Plant J.	46(3)	503-511	2006	LAX1,MOC1	lax, lax(lx), lx, OsbHLH123, bHLH123, OsLAX1, BOS1, OsBOS1,moc1, OsMOC1, OsGRAS-33, OsGRAS33, GRAS-33, GRAS33, GNP6, OsGNP6
30102	16525838	Maeng JY, Won YJ, Piao R, Cho YI, Jiang W, Chin JH, Koh HJ.	Molecular mapping of a gene 'ld(t)' controlling cleistogamy in rice.	Theor. Appl. Genet.	112(8)	1429-1433	2006	LD(T)	ld(t)
30105	15940509	Andaya CB, Tai TH.	Fine mapping of the rice low phytic acid (Lpa1) locus.	Theor. Appl. Genet.	111(3)	489-495	2005	LPA1	Lpa1, OsLpa1, OsLpa1.1, OsLpa1.2, OsLpa1.3, Oslpa1, OsLpa1-3.1, OsLpa1-3.2, OsLpa1-3.3
30109	15448199	Ma JF, Mitani N, Nagao S, Konishi S, Tamai K, Iwashita T, Yano M.	Characterization of the silicon uptake system and molecular mapping of the silicon transporter gene in rice.	Plant Physiol.	136(2)	3284-3289	2004	LSI1	lsi1, NIP2-1, OsNIP2;1, NIP2;1, OsLsi1, lsi(t), OsNIP2.1/OsLsi1/OsSIIT1, OsNIP2.1, NIP2.1
30112		E. FRAKER, J. LI and S.R. MCCOUCH	SSR Mapping of Minute, a Major Gene for Grain Size, on Rice Chromosome 3	RGN	21	21-24	2004	MI	Mii, Mi1
30113	11713677	Akagi H, Yokozeki Y, Inagaki A, Mori K, Fujimura T.	Micron, a microsatellite-targeting transposable element in the rice genome.	Molecular Genetics & Genomics (Molecular General Genetics up to 2001)	266(3)	471-480	2001	MICRON	Micron
30116	8879237	Nakazono M, Nishiwaki S, Tsutsumi N, Hirai A.	A chloroplast-derived sequence is utilized as a source of promoter sequences for the gene for subunit 9 of NADH dehydrogenase (nad9) in rice mitochondria.	Molecular Genetics & Genomics (Molecular General Genetics up to 2001)	252(4)	371-378	1996	NAD9	nad9, nad9-1, CI-27kD, CI-27KD
30117	9952442	Higuchi K, Suzuki K, Nakanishi H, Yamaguchi H, Nishizawa NK, Mori S.	Cloning of nicotianamine synthase genes, novel genes involved in the biosynthesis of phytosiderophores.	Plant Physiol.	119(2)	471-480	1999	NAS3,NAS4,NAS5,NAS6,NAS2,NAS1	OsNAS3,OsNAS4,OsNAS5,OsNAS6,OsNAS2, OsNAS1,OsNAS1
30125	15220467	Wong HL, Sakamoto T, Kawasaki T, Umemura K, Shimamoto K.	Down-regulation of metallothionein, a reactive oxygen scavenger, by the small GTPase OsRac1 in rice.	Plant Physiol.	135(3)	1447-1456	2004	MT2A,RAC1,MTI1A,MT2B,MTI3B,MTI3A,MTII1A,MTI4A,MTI2B,MTI4C	OsMT2a, MT2a, met6, Osmet6, OsMT-2, MT-2, rgMT-2, OsMT-I-2a, OsMT2-1, MT-I-2a, MT2-1,OsRAC1, OsRac1, Os Rac1, Rac1, Os-Rac1,MT1a, OsMT1a, OsMT1e, OsMT-I-1a, MT-I-1a, OsMT1e-P, MTa, rgMT, OsMT-1, rgMT-1,OsMT2b, MT2b, OsMT-I-2c, MT-I-2c, MT2C, MT2BL, OsMT2C, OsMT2BL, MTE, OsMT2b1, OsMT2b2, MT2b1, MT2b2, MTb, met1, OsMTe, OsMT-I-2c, OsB22EL8, MTe, MT-I-2c, B22EL8,MTd, OsMT-I-3b, OsMT3b, MT-I-3b, MT3b,OsMT3a, MT3a, OsMT-I-3a, MT-I-3a, MTe, met2, OsMT3, MT3, OsMTI-3a, MTI-3a,OsMT4, OsMT-II-1a, MT4, MT-II-1a,OsMT1a, OsMT1a1, OsMT1a2, OsMT-I-4a, OsIDS1, OsMT1b, MT1b,OsMT2c, OsMT-I-2b, MT2c, MT-I-2b, MTc, met5, ricMT, OsMT2,MT-1-4b, OsMT1d, MT1d, OsMT-I-4c, MT1c, OsMT1c
30128		Yamada T, Tozawa Y, Hasegawa H, Terakawa T, Ohkawa Y, Wakasa K.	Use of a feedback-insensitive  subunit of anthranilate synthase as a selectable marker for transformation of rice and potato	Molecular Breeding	14(4)	363-373	2004	ASA1	OASA1 (=ASA1), OsASA1, OASA1, OASA1(D323N), OASA1D
30130		A. Horigome, K. Ikeda, M. Ito, Y. Yamaguchi and Y. Nagato	OPEN BEAKgene regulates floral morphogenesis in rice.	RGN	22	39-41	2005	SL1	sl1(t), sl1, stl1, opb, OPB1, ps, PS, OPB, DLN2, OsDLN2, OsJAG, JAG, OsJAG.1, OsJAG.2, ZOS1-02, OsZOS1-02
30132	16798873	Yang B, Sugio A, White FF.	Os8N3 is a host disease-susceptibility gene for bacterial blight of rice.	Proc. Natl. Acad. Sci. U.S.A.	103(27)	10503-10508	2006	XA13	xa13, Xa13, Os8N3, Os-8N3, 8N3, OsSWEET11, SWEET11, OsSWEET11/Xa13, Xa13/Os8N3/SWEET11, Os8N3/Xa13, OsSWEET11/Os8N3, OsSWEET11a, SWEET11a
30133	16623902	de la Torre F, De Santis L, Suarez MF, Crespillo R, Canovas FM.	Identification and functional analysis of a prokaryotic-type aspartate aminotransferase: implications for plant amino acid metabolism.	Plant J.	46(3)	414-425	2006	AAT	OsAAT
30135	9037160	Zarembinski TI, Theologis A.	Expression characteristics of OS-ACS1 and OS-ACS2, two members of the 1-aminocyclopropane-1-carboxylate synthase gene family in rice (Oryza sativa L. cv. Habiganj Aman II) during partial submergence.	Plant Mol. Biol.	33(1)	71-77	1997	ACS2,ACS1	OsACS2, Os-ACS2,ACC1*, OsACS1, Os-ACS1, ACC1, OsACC1
30137	12011339	Zhou Z, de Almeida Engler J, Rouan D, Michiels F, Van Montagu M, Van Der Straeten D.	Tissue localization of a submergence-induced 1-aminocyclopropane-1-carboxylic acid synthase in rice.	Plant Physiol.	129(1)	72-84	2002	ACS5	OsACS5, OS-ACS5, OsBphi008a
30138	17059407	Zhuang X, Jiang J, Li J, Ma Q, Xu Y, Xue Y, Xu Z, Chong K.	Over-expression of OsAGAP, an ARF-GAP, interferes with auxin influx, vesicle trafficking and root development.	Plant J.	48(4)	581-591	2006	AGAP	OsAGAP, OsC2DP13, C2DP13
30139		Osakabe K, Endo M, Kawai K, Nishizawa Y, Ono K, Abe K, Ishikawa Y, Nakamura H, Ichikawa H, Nishimura S, Shimizu T, Toki S.	The Mutant Form of Acetolactate Synthase Genomic DNA from Rice is an Efficient Selectable Marker for Genetic Transformation	Molecular Breeding	16(4)	313-320	2005	ALS	OsALS, AHAS, OsALS1, ALS1
30140	8052231	Tanida I, Kim JK, Wu R.	Functional dissection of a rice high-pI alpha-amylase gene promoter.	Molecular Genetics & Genomics (Molecular General Genetics up to 2001)	244(2)	127-134	1994	AMY1B	Amy1B*(RAmy1B), AMYC, RAmy1B, Amy2, Amy1B, Osamy-c, OSamy-c, OSamy--c 
30141	16514560	Zhou CJ, Li J, Zou JC, Liang FS, Ye CJ, Jin DM, Weng ML, Wang B.	Cloning and characterization of a second form of the rice adenine phosphoribosyl transferase gene (OsAPT2) and its association with TGMS.	Plant Mol. Biol.	60(3)	365-376	2006	APT2	OsAPT2, APRT, OsAPRT
30143	16850192	Xu,R., Song,F. and Zheng,Z.	OsBISAMT1, a gene encoding S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase, is differentially expressed in rice defense responses.	Mol. Biol. Rep.	33(3)	223-231	2006	BISAMT1	OsBISAMT1
30146	16407447	Nakamura A, Fujioka S, Sunohara H, Kamiya N, Hong Z, Inukai Y, Miura K, Takatsuto S, Yoshida S, Ueguchi-Tanaka M, Hasegawa Y, Kitano H, Matsuoka M.	The role of OsBRI1 and its homologous genes, OsBRL1 and OsBRL3, in rice.	Plant Physiol.	140(2)	580-590	2006	D61,BRL3,BRL1	d61*, dwf42, d61, OsBRI1, OSBRI1, BRI1, Os BRI1, Osbri1, OsBRKq1, BRKq1,OsBRL3,OsBRL1
30147		Ganesh Kumar Agrawal, Shigeru Tamogami, Hitoshi Iwahashi, Vishwanath Prasad Agrawal, Randeep Rakwal.	Transient regulation of jasmonic acid-inducible rice MAP kinase gene (OsBWMK1) by diverse biotic and abiotic stresses.	Plant Physiol. Biochem.	41(4)	355-361	2003	BWMK1	OsBWMK1, MPK12, MAPK1, OsMAPK1, OsMPK12, OsMPK17-1, MPK17-1, OsBWMK1L, OsBWMK1M, OsBWMK1S, OsMAPK17-1, MAPK17-1, MAPK12, OsMAPK12
30148		Morita R, Kusaba M, Yamaguchi H, Amano E, Miyao A, Hirochika Hi, Nishimura M.	Characterization of Chlorophyllide a Oxygenase (CAO) in Rice	Breeding Science	55(3)	361-364	2005	CAO2	OsCAO2, OsCAO, CAO
30149	15952067	Lee S, Kim JH, Yoo ES, Lee CH, Hirochika H, An G.	Differential regulation of chlorophyll a oxygenase genes in rice.	Plant Mol. Biol.	57(6)	805-818	2005	YGL10,CAO2	CAO, OsCAO, CAO1, OsCAO1, Oslls1, Lls1, DVR, PGL,OsCAO2, OsCAO, CAO
30151	15980189	Hwang YS, Bethke PC, Cheong YH, Chang HS, Zhu T, Jones RL.	A gibberellin-regulated calcineurin B in rice localizes to the tonoplast and is implicated in vacuole function.	Plant Physiol.	138(3)	1347-1358	2005	CBL9,CBL3,CBL5,CBL2,CBL8,CBL7,CBL10,CBL6,CBL1,SOS3	OsCBL9,OsCBL3,OsCBL5,OsCBL2,OsCBL8,OsCBL7,OsCBL10,OsCBL6,OsCBL1, Os-CBL1,CBL4, OsCBL4, OsSOS3
30154	12956525	Akimoto-Tomiyama C, Sakata K, Yazaki J, Nakamura K, Fujii F, Shimbo K, Yamamoto K, Sasaki T, Kishimoto N, Kikuchi S, Shibuya N, Minami E.	Rice gene expression in response to N-acetylchitooligosaccharide elicitor: comprehensive analysis by DNA microarray with randomly selected ESTs.	Plant Mol. Biol.	52(3)	537-551	2003	CDPK11,CDPK1,CDPK7	OsCDPK11, OsCPK11, CPK11,OsCDPK1, OsCPK1, CPK1,OsCDPK7, OsCPK7, CDPK1, OsCDPK11, CDPK12, OsCDPK13
30157	15604699	Abbasi F, Onodera H, Toki S, Tanaka H, Komatsu S.	OsCDPK13, a calcium-dependent protein kinase gene from rice, is induced by cold and gibberellin in rice leaf sheath.	Plant Mol. Biol.	55(4)	541-552	2004	CDPK13	OsCDPK13, OsCPK13, OsCDPK7, CDPK7, OsCPK13-1, OsCPK13-2
30158	12970476	Tanaka K, Murata K, Yamazaki M, Onosato K, Miyao A, Hirochika H.	Three distinct rice cellulose synthase catalytic subunit genes required for cellulose synthesis in the secondary wall.	Plant Physiol.	133(1)	73-83	2003	CESA5,BC7,CESA8,CESA10,CESA1,CESA6,CESA2,BC6,CESA3,CESA7	OsCesA5, OsCESA5, OS_CESA05,OsCesA4, OsCESA4, CESA4, OS_CESA04, BC11, bc7t, Bc7(t), bc-7, OsCesA 4, CesA4, FC17/CESA4, FC17, OsFC17,OsCesA8, OsCESA8, OS_CESA08, CesA8,OsCesA10, OsCESA10,OsCesA1, OsCesA-1, OsCESA1, OS_CESA01, CesA1,OsCesA6, OsCESA6, OS_CESA06,OsCesA2, OsCESA2, OS_CESA02,Bc6*, Bc6, OsCesA9, CESA9, OsCESA9, OS_CESA09, OsCesA 9, CesA9, BC88, SDBC1, OsSDBC1,OsCesA3, OsCESA3, OS_CESA03,OsCesA7, OsCESA7, OS_CESA07, OsCesA 7, CesA7
30164	16574868	Burton RA, Wilson SM, Hrmova M, Harvey AJ, Shirley NJ, Medhurst A, Stone BA, Newbigin EJ, Bacic A, Fincher GB.	Cellulose synthase-like CslF genes mediate the synthesis of cell wall (1,3;1,4)-beta-D-glucans.	Science	311(5769)	1940-1942	2006	CSLF	Csl,OsCslF
30166	14500792	Washio K.	Functional dissections between GAMYB and Dof transcription factors suggest a role for protein-protein associations in the gibberellin-mediated expression of the RAmy1A gene in the rice aleurone.	Plant Physiol.	133(2)	850-863	2003	AMY1A,RPBF	Amy1A/C*(RAmy1A/C), alpha Amy7, AMY1.1, Amy1A, RAmy1A/C, Amy1A/C*, Amy1, Amy1A_C, OsAmy1A, alphaAmy7-C, RAmy1A, AmyI-1, OsAmyI-1, OsRamy1A,OsDof3, OsDOF3, OsEnS-34, OsDof10, Dof10, OsDof-10, OsDOF1, DOF1, DOF3, OsRPBF, OsDOF7
30167	16778011	Kong Z, Li M, Yang W, Xu W, Xue Y.	A novel nuclear-localized CCCH-type zinc finger protein, OsDOS, is involved in delaying leaf senescence in rice.	Plant Physiol.	141(4)	1376-1388	2006	DOS	OsDOS, OsC3H2, C3H2, OsTZF2, OsCCCH-Zn-4
30168	16514565	Wang,G., Ding,X., Yuan,M., Qiu,D., Li,X., Xu,C. and Wang,S.	Dual function of rice OsDR8 gene in disease resistance and thiamine accumulation.	Plant Mol. Biol.	60(3)	437-449	2006	PAL1,PR1B,PR10A,POX22.3,PR5,DR8,PR4,PR1A	OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1, OsPR1a, PR1a,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,POX22.3, OSPER, OsPOX, POX, Pir3, prx111, POX22, OsPOX1, POX1, OsPOX22.3, OsPR9, PR9,OsPR5, Pir2, PR-5, PR5-1,OsDR8, OsXNP, FOXRED1,OsPR4, OsPR4a, PR4a, OsPR-4,OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1, OsPR1b, PR1alpha, OsPR1alpha
30169		Fujimoto M, Arimura S, Nakazono M, Tsutsumi N.	A Rice Dynamin-like Protein, OsDRP3A, Is Involved in Mitochondrial Fission	Breeding Science	54(4)	367-372	2004	DRP3A,DRP3B	OsDRP3A,OsDRP3B
30172	16786297	Mao,C., Wang,S., Jia,Q. and Wu,P.	OsEIL1, a rice homolog of the Arabidopsis EIN3 regulates the ethylene response as a positive component.	Plant Mol. Biol.	61(1-2)	141-152	2006	EIL1A,EIL1,EIL4,EIL5,EIL6,EIL3,EIL2	EIL1, OsEIL1, EIL1a, OsEIL1a, MHZ6/OsEIL1, MHZ6, OsMHZ6,OsEIL1, EIN3, OsEIN3, MHZ6, OsEIL1a, EIL1a, OsEIL1b, EIL1b,OsEIL4,OsEIL5,OsEIL6,OsEIL3,OsEIL2
30183	16361526	Zhou M, Xu H, Wei X, Ye Z, Wei L, Gong W, Wang Y, Zhu Z.	Identification of a glyphosate-resistant mutant of rice 5-enolpyruvylshikimate 3-phosphate synthase using a directed evolution strategy.	Plant Physiol.	140(1)	184-195	2006	EPSPS	OsEPSPS
30185	15480789	Yang L, Zheng B, Mao C, Qi X, Liu F, Wu P.	Analysis of transcripts that are differentially expressed in three sectors of the rice root system under water deficit.	Molecular Genetics & Genomics (Molecular General Genetics up to 2001)	272(4)	433-442.	2004	SIP2A,EXPA2	Sip2A, ARD 2, ARD2, OsARD2, OsARD, IDI1, OsIDI1,OsEXP2, OsEXP2(Os-EXP2), Os-EXP2, EXPA2, OsEXPA2, OsaEXPa1.23, RiExB, RiExC, Os-EXPA2
30195	15604710	Oikawa T, Koshioka M, Kojima K, Yoshida H, Kawata M.	A role of OsGA20ox1 , encoding an isoform of gibberellin 20-oxidase, for regulation of plant stature in rice.	Plant Mol. Biol.	55(5)	687-700	2004	SD1,GNP1	sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2, OsPHQ1, OsPHq1, PHq1,GA20OX1, OsGA20ox1, 20ox1, GA20ox-1, ga20ox1, Os20ox, C20OX2, OsGA20ox2, OsGA20ox-1, GA20ox1, OsGNP1
30197	16915516	Jan A, Kitano H, Matsumoto H, Komatsu S.	The rice OsGAE1 is a novel gibberellin-regulated gene and involved in rice growth.	Plant Mol. Biol.	62(3)	439-452	2006	GAE1	OsGAE1
30198	16792694	Tsuji H, Aya K, Ueguchi-Tanaka M, Shimada Y, Nakazono M, Watanabe R, Nishizawa NK, Gomi K, Shimada A, Kitano H, Ashikari M, Matsuoka M.	GAMYB controls different sets of genes and is differentially regulated by microRNA in aleurone cells and anthers.	Plant J.	47(3)	427-444	2006	GAMYB,GAMYBL1,GAMYBL2	OsGAMYB, GAM1, OsGAMyb, Os-MYBGA, Os GAMYB, OsMYBGA, MYBGA, Os2R_MYB15, 2R_MYB15 ,OsGAMYBL1, OsMYB80, MYB80, Os2R_MYB66, 2R_MYB66,OsGAMYBL2, Os2R_MYB40, 2R_MYB40
30201	10712532	van der Knaap E, Kim JH, Kende H.	A novel gibberellin-induced gene from rice and its potential regulatory role in stem growth.	Plant Physiol.	122(3)	695-704	2000	GRF1	OsGRF1
30202	16741739	Andaya VC, Tai TH.	Fine mapping of the qCTS12 locus, a major QTL for seedling cold tolerance in rice.	Theor. Appl. Genet.	113(3)	467-475	2006	qCTS12,GSTZ2,GSTZ1	qCTS12,OsGSTZ2, GSTZ-2,OsGSTZ1, GSTZ-1
30204	8628242	Sato Y, Tamaoki M, Murakami T, Yamamoto N, Kano-Murakami Y, Matsuoka M.	Abnormal cell divisions in leaf primordia caused by the expression of the rice homeobox gene OSH1 lead to altered morphology of leaves in transgenic tobacco.	Molecular Genetics & Genomics (Molecular General Genetics up to 2001)	251(1)	13-22	1996	OSH1	OSKN1, Oskn1, OsKN1, OSH1/Oskn1, HB75
30208	12428000	Scarpella E, Boot KJ, Rueb S, Meijer AH.	The procambium specification gene Oshox1 promotes polar auxin transport capacity and reduces its sensitivity toward inhibition.	Plant Physiol.	130(3)	1349-1360	2002	HOX1	Oshox1, OsHox1, OsHDZ38, OsHDZIP38, HDZ38, HDZIP38
30214	15803416	Guan JC, Jinn TL, Yeh CH, Feng SP, Chen YM, Lin CY.	Characterization of the genomic structures and selective expression profiles of nine class I small heat shock protein genes clustered on two chromosomes in rice (Oryza sativa L.).	Plant Mol. Biol.	56(5)	795-809	2004	HSP16.9A,HSP16.9B,HSP18.0,HSP16.9D,HSP17.9B,HSP16.9C,HSP17.9A,HSP,HSP17.7,HSP17.3,HSP80.2	Oshsp16.9A, OsHsp16.9A, HSP16.9A, OsHSP16.9A-CI,Oshsp16.9B, OsHsp16.9B, HSP16.9B, OsHsp17.0, OsHSP16.9B-CI, OsHSP17.0, Hsp17.0, OsSHSP2, OsSTA3,OsHSP18.0-CI, HSP18.0-CI, OsHsp18.0, OsHSP18.0, Oshsp18.0, OsSHSP1, SHSP1, OsMSR3, MSR3, OsHSP20, HSP20, OsHSP18.6, HSP18.6,Oshsp16.9D,Oshsp17.9B., OsHsp17.9B,Oshsp16.9C, OsHsp16.9C, HSP16.9C, OsHSP16.9C-CI, Oshsp 16.9C,Oshsp17.9A, OsHsp17.9A, OsHSP17.9A-CI, Oshsp17.9,Oshsp,OsHsp17.7, OsHSP17.4-CI, OsHSP17.7, Oshsp17.7,OsHsp17.3, OsHSP17.3, Oshsp17.3 ,OsHsp80.2, OsHSP80.2
30215	12650620	Agarwal M, Sahi C, Katiyar-Agarwal S, Agarwal S, Young T, Gallie DR, Sharma VM, Ganesan K, Grover A.	Molecular characterization of rice hsp101: complementation of yeast hsp104 mutation by disaggregation of protein granules and differential expression in indica and japonica rice types.	Plant Mol. Biol.	51(4)	543-553	2003	HSP101	Oshsp101, OsHSP101, ClpB-cyt, OsClpB-cyt, ClpB-C/Hsp100, OsClpB-C
30225	16500989	Ghosh Dastidar K, Maitra S, Goswami L, Roy D, Das KP, Majumder AL.	An insight into the molecular basis of salt tolerance of L-myo-inositol 1-P synthase (PcINO1) from Porteresia coarctata (Roxb.) Tateoka, a halophytic wild rice.	Plant Physiol.	140(4)	1279-1296	2006	INO1	OsINO1, MIPS, IPS, RINO1, OsINO1-1, OsRINO1, OsMIPS1, MIPS1
30226	16861569	Sakamoto T, Sakakibara H, Kojima M, Yamamoto Y, Nagasaki H, Inukai Y, Sato Y, Matsuoka M.	Ectopic expression of KNOTTED1-like homeobox protein induces expression of cytokinin biosynthesis genes in rice.	Plant Physiol.	142(1)	54-62	2006	IPT7,IPT1,IPT6,IPT2,IPT8,IPT5,IPT3,IPT4	OsIPT7,OsIPT1,OsIPT6, OsIPT6.p,OsIPT2,OsIPT8,OsIPT5,OsIPT3,OsIPT4
30234	15618430	Kubo A, Rahman S, Utsumi Y, Li Z, Mukai Y, Yamamoto M, Ugaki M, Harada K, Satoh H, Konik-Rose C, Morell M, Nakamura Y.	Complementation of sugary-1 phenotype in rice endosperm with the wheat isoamylase1 gene supports a direct role for isoamylase1 in amylopectin biosynthesis.	Plant Physiol.	137(1)	43-56	2005	PHS8,ISA2,ISA3	ISA1, OsISA1, ISA, OsISA, PHS8/ISA1, OsPHS8, ISA I, OsISA I, ISAI, OsISAI,OsISA2, ISA II, OsISA II,OsISA3
30242	10364408	van der Knaap E, Song WY, Ruan DL, Sauter M, Ronald PC, Kende H.	Expression of a gibberellin-induced leucine-rich repeat receptor-like protein kinase in deepwater rice and its interaction with kinase-associated protein phosphatase.	Plant Physiol.	120(2)	559-570	1999	TMK,OSKAPP	OsTMK,OsKAPP, OsPP94, DLN179, OsDLN179
30243	15604716	Kuijt SJ, Lamers GE, Rueb S, Scarpella E, Ouwerkerk PB, Spaink HP, Meijer AH.	Different subcellular localization and trafficking properties of KNOX class 1 homeodomain proteins from rice.	Plant Mol. Biol.	55(6)	781-796	2004	OSH15,OSKN2,OSH1	OSH15, OsH15, OSKN3, Oskn3, HOS3, D6, d6, OSH15/Oskn3, HB253, H15, OsKNOX3, KNOX3,OsKn2, OsH71, HOS9, OSH71, OSH71/Oskn2,OSKN1, Oskn1, OsKN1, OSH1/Oskn1, HB75
30245	11908517	Postma-Haarsma AD, Rueb S, Scarpella E, den Besten W, Hoge JH, Meijer AH.	Developmental regulation and downstream effects of the knox class homeobox genes Oskn2 and Oskn3 from rice.	Plant Mol. Biol.	48(4)	423-441	2002	OSKN2,OSH15	OsKn2, OsH71, HOS9, OSH71, OSH71/Oskn2,OSH15, OsH15, OSKN3, Oskn3, HOS3, D6, d6, OSH15/Oskn3, HB253, H15, OsKNOX3, KNOX3
30255	11197326	Lim J, Moon YH, An G, Jang SK.	Two rice MADS domain proteins interact with OsMADS1.	Plant Mol. Biol.	44(4)	513-527	2000	RAP1B,LHS1,RAP1A	MADS14, OsMADS14, FDRMADS6, RMADS211, AGL10,OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO, OsLHS1, OsLG3b, LG3b, qLGY3, LGY3, DLN80, OsDLN80, OLR, OsOLR, GW3p6, OsGW3p6, OsMADS1GW3p6, MADS1GW3p6, qLGY3/OsLG3b/GW3p6,OsMADS15, FDRMADS3, RMADS215, MADS15, DEP
30256	16217607	Agrawal GK, Abe K, Yamazaki M, Miyao A, Hirochika H.	Conservation of the E-function for floral organ identity in rice revealed by the analysis of tissue culture-induced loss-of-function mutants of the OsMADS1 gene.	Plant Mol. Biol.	59(1)	125-135	2005	MADS5,LHS1	OsMADS5, FDRMADS2,OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO, OsLHS1, OsLG3b, LG3b, qLGY3, LGY3, DLN80, OsDLN80, OLR, OsOLR, GW3p6, OsGW3p6, OsMADS1GW3p6, MADS1GW3p6, qLGY3/OsLG3b/GW3p6
30262	14558657	Xiao H, Wang Y, Liu D, Wang W, Li X, Zhao X, Xu J, Zhai W, Zhu L.	Functional analysis of the rice AP3 homologue OsMADS16 by RNA interference.	Plant Mol. Biol.	52(5)	957-966	2003	MADS4	OsMADS4, PI1, DLN140, OsDLN140
30272	16927200	Lu XC, Gong HQ, Huang ML, Bai SL, He YB, Mao X, Geng Z, Li SG, Wei L, Yuwen JS, Xu ZH, Bai SN.	Molecular analysis of early rice stamen development using organ-specific gene expression profiling.	Plant Mol. Biol.	61(6)	845-861	2006	MADS7	OsMADS7, OsMADS45, FDRMADS1, RMADS216, AGL6, M79, MADS45, Os MADS7, Os MADS45, OsMADS7/45
30275	16861571	Xie K, Wu C, Xiong L.	Genomic organization, differential expression, and interaction of SQUAMOSA promoter-binding-like transcription factors and microRNA156 in rice.	Plant Physiol.	142(1)	280-293	2006	WFP,SPL19,SPL11,SPL4,SPL6,SPL1,SPL17,SPL18,SPL5,LCRN1,MIR156B,SPL,SPL2,MIR156A,MIR156F,MIR156D,MIR156J,MIR156E,MIR156I,MIR156C,MIR156G,MIR156L,SDT,MIR156K,SST,SPL9,SPL15,GW8,LG1,SPL7,SPL12,GLW7 	OsSPL14, SPL14, IPA1, WFP/IPA1, OsSPL14/WFP/IPA1, OsIPA1,  IPA1/OsSPL14,OsSPL19,OsSPL11,OsSPL4,OsSPL6, DLN106, DLN106a, DLN106b, OsDLN106, OsDLN106a, OsDLN106b,OsSPL1, DLN8, OsDLN8, DLN8a, DLN8b, OsDLN8a, OsDLN8b,OsSPL17,OsSPL18,OsSPL5,OsSPL3, SPL3, OsLCRN1,miR156b, OsmiR156b, osmiR156b, osa-miR156b, osa-MIR156b, miR156b*osa-miR156b-3p osa-miR156b-5p,OsSPL,OsSPL2,miR156a, OsmiR156a, osmiR156a, osa-miR156a, osa-MIR156a,miR156f, osmiR156f, OsmiR156f, osa-miR156f, osa-MIR156fosa-miR156f-3p osa-miR156f-5p,miR156d, OsmiR156d, osmiR156d, osa-miR156d, osa-MIR156d,miR156j, OsmiR156j, osmiR156j, osa-miR156j, osa-MIR156josa-miR156j-3p osa-miR156j-5p,miR156e, OsmiR156e, osmiR156e, osa-miR156e, osa-MIR156e,miR156i, OsmiR156i, osmiR156i, osa-miR156i, osa-MIR156i,miR156c, OsmiR156c, osmiR156c, osa-miR156c,osa-MIR156c, miR156c*osa-miR156c-3p osa-miR156c-5p,miR156g, OsmiR156g, osmiR156g, osa-miR156g, osa-MIR156gosa-miR156g-3p osa-miR156g-5p,miR156l, OsmiR156l, osmiR156l, osa-miR156l, osa-MIR156l, osa-miR156l-3p, osa-miR156l-5p,miR156h, OsmiR156h, osmiR156h, osa-miR156h, osa-MIR156hosa-miR156h-3p osa-miR156h-5p,miR156k, OsmiR156k, osmiR156k, osa-miR156k, osa-MIR156k,OsSPL10, SPL10, OsSST, SST/OsSPL10,OsSPL9,OsSPL15, DLN215, OsDLN215,SPL16, OsSPL16, SLP1, OsSLP1, qGW8, OsGW8,SPL8, OsSPL8, OsLG1,OsSPL7,OsSPL12, DLN176, OsDLN176,OsSPL13, SPL13, OsGLW7
30277	12436254	Asakura N, Nakamura C, Ishii T, Kasai Y, Yoshida S.	A transcriptionally active maize MuDR-like transposable element in rice and its relatives.	Molecular Genetics & Genomics (Molecular General Genetics up to 2001)	268(3)	321-330	2002	MU10-1,MU91665,MU03578,MU03854,MU4-2,MU74283,MU79843,MU90882,MU	OsMu10-1,OsMu91665,OsMu03578,OsMu03854,OsMu4-2,OsMu74283,OsMu79843,OsMu90882,OsMu element
30286		K. Hibara and Y. Nagato	Petunia NO APICAL MERISTEM ortholog, OsNAM, is expressed in the embryonic SAM and organ Boundary in rice.	RGN	22	83-85	2005	CUC3,NAM	OsCUC3, ONAC107, NAC107, DLN214, OsDLN214,OsNAM, OMTN5, ONAC092, ONAC92, NAC92, CUC2, OsNAM/CUC2, DLN165, OsDLN165, OsCUC1, CUC1, OsNAM/ OMTN5, OsNAM1, NAM1
30287		Araki R, Hasegawa H.	Expression of Rice (Oryza sativa L.) Genes Involved in High-Affinity Nitrate Transport during the Period of Nitrate Induction	Breeding Science	56(3)	295-302	2006	NRT2.2,NRT2.4,HTNE,NAR2.2,NRT2.1,NAR2.1	OsNRT2.2, OsNRT2.1,OsNRT2.4,NRT2.3, OsNRT2.3, OsNRT2;1, OsNRT2.3a, OsNRT2.3b, OsNRT2;3a, OsNRT2.5 ,OsNAR2.2, OsNRT3.1B,OsNRT2.1, OsNRT2.2,OsNAR2.1, OsNRT3.1A
30305		Ganesh Kumar Agrawal, Randeep Rakwal, Nam-Soo Jwa, Vishwanath Prasad Agrawal.	Oryza sativa proteinase inhibitor gene, OsPIN, whose mRNA specifically accumulates in a compatible hostblast pathogen interaction.	Plant Physiol. Biochem.	40(2)	175-182	2002	PIN	OsPIN
30311	11867229	Ganesh Kumar Agrawala, Randeep Rakwalb, Nam-Soo Jwac,Vishwanath Prasad Agrawal	Effects of signaling molecules, protein phosphatase inhibitors and blast pathogen (Magnaporthe grisea) on the mRNA level of a rice (Oryza sativa L.) phospholipid hydroperoxide glutathione peroxidase(OsPHGPX) gene in seedling leaves	Gene	283(1-2)	227-236	2002	PHGPX	OsGpx2, GPX2, OsGPx02, PHGPX, ricPHGPX, riPHGPX 
30317	12805623	Sanchez R, Cejudo FJ.	Identification and expression analysis of a gene encoding a bacterial-type phosphoenolpyruvate carboxylase from Arabidopsis and rice.	Plant Physiol.	132(2)	949-957	2003	PPC,PEPC1,PPC2,PPPCB	Osppc-b,PEPC-1, Osppc1, ppc1,Osppc3, Osppc2, ppc3,ppc2,Osppc-b, OsSTA1, ppc-b, STA1, BTPC, OsBTPC
30321		Randeep Rakwal, Ganesh Kumar Agrawal, Masami Yonekura.	Light-dependent induction of OsPR10 in rice (Oryza sativa L.) seedlings by the global stress signaling molecule jasmonic acid and protein phosphatase 2A inhibitors.	Plant Sci.	161(3)	469-479	2001	PR10A	PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 
30323		Ganesh Kumar Agrawal, Randeep Rakwal, Nam-Soo Jwa, Vishwanath Prasad Agrawal.	Signalling molecules and blast pathogen attack activates rice OsPR1a and OsPR1b genes: A model illustrating components participating during defence/stress response.	Plant Physiol. Biochem.	39(2)	1095-1103	2001	PR1A,PR1,PR1B	OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1, OsPR1b, PR1alpha, OsPR1alpha,OsPR1,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1, OsPR1a, PR1a
30324	11097833	Agrawal GK, Rakwal R, Jwa NS.	Rice (Oryza sativa L.) OsPR1b gene is phytohormonally regulated in close interaction with light signals.	Biochem. Biophys. Res. Commun.	278	290-298	2000	PR1B	OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1, OsPR1a, PR1a
30334	16172097	Miki D, Itoh R, Shimamoto K.	RNA silencing of single and multiple members in a gene family of rice.	Plant Physiol.	138(4)	1903-1913	2005	RAC3,PDA,RAC5,RAC1,RAC2,RAC7,RAC4,RAC6	OsRac3,PDS1, PDS, OsPDS, Pds, OsPDA,Osrac5, OsRac5, RACD, OsRacD, OsRACD,OsRAC1, OsRac1, Os Rac1, Rac1, Os-Rac1,OsRAC2, OsRac2,OSRAC7, OsRac7, ROP5, OsRop5,OsRAC4, OsRac4, ROP4, OsRop4,OsRacB, RacB, OsRac6
30336	16531052	Jung YH, Agrawal GK, Rakwal R, Kim JA, Lee MO, Choi PG, Kim YJ, Kim MJ, Shibato J, Kim SH, Iwahashi H, Jwa NS.	Functional characterization of OsRacB GTPase--a potentially negative regulator of basal disease resistance in rice.	Plant Physiol. Biochem.	44(1)	68-77	2006	RAC6,RAC1	OsRacB, RacB, OsRac6,OsRAC1, OsRac1, Os Rac1, Rac1, Os-Rac1
30343	17052323	Shimada A, Ueguchi-Tanaka M, Sakamoto T, Fujioka S, Takatsuto S, Yoshida S, Sazuka T, Ashikari M, Matsuoka M.	The rice SPINDLY gene functions as a negative regulator of gibberellin signaling by controlling the suppressive function of the DELLA protein, SLR1, and modulating brassinosteroid synthesis.	Plant J.	48(3)	390-402	2006	SLR1,SPY	slr1-1, slr1, slr, GAI, OsGAI, OsSLR1, Os SLR1, OsRGA1, OsGRAS-18, OsGRAS-18, GRAS-18, GRAS18, SLR-1,OsSPY
30344	10982424	Matsukura C, Saitoh T, Hirose T, Ohsugi R, Perata P, Yamaguchi J.	Sugar uptake and transport in rice embryo. Expression of companion cell-specific sucrose transporter (OsSUT1) induced by sugar and light.	Plant Physiol.	124(1)	85-94	2000	SUT1	OsSUT1, OsSUT2
30347	10889249	Jeon JS, Lee S, Jung KH, Jun SH, Kim C, An G.	Tissue-preferential expression of a rice alpha-tubulin gene, OsTubA1, mediated by the first intron.	Plant Physiol.	123(3)	1005-1014	2000	TUBA1	OsTubA1, TubA1, OS-TubA3, TubA3
30348	16286450	Zhang S, Chen C, Li L, Meng L, Singh J, Jiang N, Deng XW, He ZH, Lemaux PG.	Evolutionary expansion, gene structure, and expression of the rice wall-associated kinase gene family.	Plant Physiol.	139(3)	1107-1124	2005	WAK61,WAK105,WAK5,WAK18,WAK10,WAK50,WAK73,WAK96/97,WAK111,WAK122,WAK9,WAK81,WAK55,WAK128,DEES1,WAK59,WAK125,WAK66,WAK74,WAK46,WAK112,WAK62,WAK95,WAK71,WAK70,WAK103,WAK104,WAK108,WAK109/110,WAK113,WAK114,WAK117,WAK120,WAK124,WAK,WAK107,WAK121,WAK116,WAK118,WAK119,WAK126,WAK127,WAK115,WAK129,WAK17,WAK1,WAK2,WAK3,WAK6,WAK7/8,WAK19,WAK21,WAK23,WAK24,WAK28,WAK33,WAK30/31,WAK43,WAK49,WAK48,WAK51,WAK53,WAK63,WAK64,WAK65,WAK84,WAK88,WAK89A,WAK123,WAK26,WAK37,WAK39,WAK42,WAK56,WAK87,WAK94,WAK12,WAK16,WAK15,WAK4,WAK72,WAK82,WAK98,WAK93,WAK100,WAK102,WAK36,WAK77,WAK20,WAK99,WAK101,WAK35,WAK89B,WAK76,WAK34,WAK60,WAK40,WAK13,WAK22,WAK44,WAK41,WAK27,WAK52,WAK54,WAK67,WAK68,WAK69,WAK75,WAK78,WAK79,WAK80,WAK83,WAK86,WAK57/58,WAK25,WAK85,WAK38,WAK29,WAK47,WAK32,WAK45,WAK11,WAK90,WAK14,WAK92	OsWAK61, OsRLCK195, RLCK195,OsWAK105, YK3,OsWAK5,OsWAK18,OsWAK10,OsWAK50,OsWAK73,OsWAK96/97, OsWAK96, OsWAK97,OsWAK111,OsWAK122,OsWAK9,OsWAK81, OsRLCK273, RLCK273,OsWAK55,OsWAK128,WAK91, OsWAK91, OsDEES1,OsWAK59,OsWAK125, OsRLCK368, RLCK368, OsWAK-RLP,OsWAK66, OsRLCK224, RLCK224,OsWAK74,OsWAK46, OsWAK2-L, WAK2-L, OsWAK2L, WAK2L,OsWAK112, OsWAK112d ,OsWAK62, GOS9,OsWAK95,OsWAK71, OsRLCK229, RLCK229,OsWAK70, OsRLCK230, RLCK230,OsWAK103,OsWAK104,OsWAK108,OsWAK109/110, OsWAK109, OsWAK110,OsWAK113,OsWAK114,OsWAK117,OsWAK120,OsWAK124,OsWAK,OsWAK107, OsWAK106, WAK106,OsWAK121,OsWAK116, OsRLCK332, RLCK332,OsWAK118, OsRLCK333, RLCK333,OsWAK119, OsRLCK335, RLCK335,OsWAK126, OsRLCK374, RLCK374,OsWAK127,OsWAK115,OsWAK129, OsRLCK375, RLCK375, OsWAK129b,OsWAK17,OsWAK1, WAK-1,OsWAK2,OsWAK3,OsWAK6,OsWAK7/8, OsWAK7, OsWAK8,OsWAK19,OsWAK21,OsWAK23,OsWAK24,OsWAK28,OsWAK33,OsWAK30, OsWAK30/OsWAK31, OsWAK31,OsWAK43,OsWAK49,OsWAK48,OsWAK51,OsWAK53, OsWAK53a,OsWAK63,OsWAK64,OsWAK65,OsWAK84,OsWAK88,OsWAK89a,OsWAK123,OsWAK26,OsWAK37,OsWAK39,OsWAK42,OsWAK56,OsWAK87,OsWAK94,OsWAK12, OsRLCK75, RLCK75,OsWAK16, OsRLCK77, RLCK77,OsWAK15, OsRLCK76, RLCK76,OsWAK4, OsRLCK32, RLCK32,OsWAK72, OsRLCK228, RLCK228,OsWAK82, OsRLCK274, RLCK274,OsWAK98, OsRLCK287, RLCK287,OsWAK93, OsRLCK286, RLCK286,OsWAK100, OsRLCK291, RLCK291,OsWAK102, OsRLCK293, RLCK293,OsWAK36, OsRLCK140, RLCK140,OsWAK77, OsRLCK252, RLCK252,OsWAK20,OsWAK99,OsWAK101, OsRLCK292, RLCK292,OsWAK35,OsWAK89b,OsWAK76,OsWAK34,OsWAK60,OsWAK40,OsWAK13,OsWAK22,OsWAK44, OsRLCK142, RLCK142,OsWAK41,OsWAK27, OsRLCK114, RLCK114,OsWAK52,OsWAK54,OsWAK67,OsWAK68, OsRLCK225, RLCK225,OsWAK69, OsRLCK231, RLCK231,OsWAK75,OsWAK78,OsWAK79,OsWAK80,OsWAK83,OsWAK86,OsWAK57/58, OsWAK57, OsWAK58,OsWAK25,OsWAK85, YK10,OsWAK38,OsWAK29,OsWAK47, OsRLCK147, RLCK147,OsWAK32,OsWAK45, OsRLCK143, RLCK143,OsWAK11,OsWAK90,OsWAK14,OsWAK92, OsDEES1-L4
30350	16623886	Xie Z, Zhang ZL, Zou X, Yang G, Komatsu S, Shen QJ.	Interactions of two abscisic-acid induced WRKY genes in repressing gibberellin signaling in aleurone cells.	Plant J.	46(2)	231-242	2006	WRKY51,WRKY71	OsWRKY51,OsWRKY71, WRKY-71
30353	10712549	Uozu S, Tanaka-Ueguchi M, Kitano H, Hattori K, Matsuoka M.	Characterization of XET-related genes of rice.	Plant Physiol.	122(3)	853-859	2000	XTH3,XTH11,XTH23,XTH2	OsXTH3, XTR4, OsXTR4,OsXTH11, XTR2, OsXTR2, Meri-5,OsXTH23, XTR3, OsXTR3,OsXTH2, XTR1, OsXTR1
30357	15604733	Jang S, Hur J, Kim SJ, Han MJ, Kim SR, An G.	Ectopic expression of OsYAB1 causes extra stamens and carpels in rice.	Plant Mol. Biol.	56(1)	133-143	2004	YAB1,SH1,YAB5,YAB3	OsYAB1, FIL1, osFIL1,YAB2, OsYAB2, OsSh1, Sh1, OsFIL2, OsSH1, Osh1,OsYABBY5, OsYAB3, YAB3, Os YABBY5, TOB1, OsTPB1,OsYAB3, OsYAB4, TOB3
30367		Ebron L A, Fukuta Y, Imbe T, Kato H, Yanoria JMT, Tsunematsu H, Khush GS, Yokoo M.	Estimation of Genes in Blast Resistance in Elite Indica-type Rice (Oryza sativa L.) Varieties-bred at the International Rice Research Institute	Breeding Science	54(4)	381-387	2004	PITA,PI20,PIK	Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30, Trx30,Pi20, Pi20(t),Pik, RMg8, Pi-k, Pik-2, Pik-1, Pik1, Pik2, Pik-H4, Pikp-1, Pikh-1, Pik1-H4, Pikh-2, Pik2-H4
30369	12111554	Liu G, Lu G, Zeng L, Wang GL.	Two broad-spectrum blast resistance genes, Pi9( t) and Pi2( t), are physically linked on rice chromosome 6.	Molecular Genetics & Genomics (Molecular General Genetics up to 2001)	267(4)	472-480	2002	PI9,PIZ	Pi9(t), Pi9(t)*, Pi9, Pi-9(t),Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2
30371	15856160	Wu JL, Fan YY, Li DB, Zheng KL, Leung H, Zhuang JY.	Genetic control of rice blast resistance in the durably resistant cultivar Gumei 2 against multiple isolates.	Theor. Appl. Genet.	111(1)	50-56	2005	PI25,PIB,PI26	Pi25, Pi25(t),Pi b(Pi s), Pis, Pib, Pi-s, Pi-hy,Pi26(t), Pi26
30372	16151856	Liu XQ, Wang L, Chen S, Lin F, Pan QH.	Genetic and physical mapping of Pi36(t), a novel rice blast resistance gene located on rice chromosome 8.	Molecular Genetics & Genomics (Molecular General Genetics up to 2001)	274(4)	394-401	2005	PI11,PIGD1,PI29,PI33,PI36	Pi11(t)*(Pi zh), Pi11(t)*, Pizh, Pi-zh, Pi-zh*, Pi-zh(t), Pi-11(t), Pi-11, Pi11,Pi-GD-1(t), PiGD1, PiGD-1(t),Pi-29(t), Pi29(t),Pi33(t), RMg70, Pi-33(t), Pi-33, Pi33,Pi36(t), Pi36
30373	16189658	Chen S, Wang L, Que Z, Pan R, Pan Q.	Genetic and physical mapping of Pi37(t), a new gene conferring resistance to rice blast in the famous cultivar St. No. 1.	Theor. Appl. Genet.	111(8)	1563-1570	2005	PIF,PI37	Pi f, PIF, Pif, RMg3, Pi-f,Pi37(t), Pi37
30374	12756540	Jeon JS, Chen D, Yi GH, Wang GL, Ronald PC.	Genetic and physical mapping of Pi5(t), a locus associated with broad-spectrum resistance to rice blast.	Molecular Genetics & Genomics (Molecular General Genetics up to 2001)	269(2)	280-289	2003	PI5-2,PI3	Pi3, Pi5, Pi-3(t), Pi-3, Pi3(t), Pi5(t), Pi5-2, Pii,  RMg22, RMg21,Pi3, Pi5, Pi-3(t), Pi-3, Pi3(t), Pi5(t), Pi5-1, Pii,  RMg22, RMg21
30376	12172799	Chauhan RS, Farman ML, Zhang HB, Leong SA.	Genetic and physical mapping of a rice blast resistance locus, Pi-CO39(t), that corresponds to the avirulence gene AVR1-CO39 of Magnaporthe grisea.	Molecular Genetics & Genomics (Molecular General Genetics up to 2001)	267(5)	603-612	2002	PICO39	PiCO39(t), Pi-CO39, Pi-CO39(t), pi-CO39(t)
30377		X. W. Chen, S. G. Li, J. C. Xu, W. X. Zhai, Z. Z. Ling, B. T. Ma, Y. P. Wang, W. M. Wang, G. Cao, Y. Q. Ma, J. J. Shang, X. F. Zhao, K. D. Zhou, L. H. Zhu	Identification of Two Blast Resistance Genes in a Rice Variety, Digu	J. Phytopathology	152(2)	77-85	2004	PID2,PID1	Pi-d2, Pi-d(t)2, PiD2(t), Pid2, PI-D2, Pi-d2(t), SDRLK-PID2, OsSDRLK-PID2,Pi-d1, Pi-d(t), Pi-d(t)1, PiD1(t), Pid1, Pid1(t)
30378	16709195	Chen X, Shang J, Chen D, Lei C, Zou Y, Zhai W, Liu G, Xu J, Ling Z, Cao G, Ma B, Wang Y, Zhao X, Li S, Zhu L.	A B-lectin receptor kinase gene conferring rice blast resistance.	Plant J.	46(5)	794-804	2006	PID1,PID2	Pi-d1, Pi-d(t), Pi-d(t)1, PiD1(t), Pid1, Pid1(t),Pi-d2, Pi-d(t)2, PiD2(t), Pid2, PI-D2, Pi-d2(t), SDRLK-PID2, OsSDRLK-PID2
30383		C.L. Lei, D.Y. Huang, W. Li, J.L. Wang, Z.L. Liu, X.T. Wang, K. Shi, Z.J. Cheng, X. Zhsng, Z.Z. Ling and J.M. Wan	Molecular mapping of a blast resistance gene in an indica rice cultivar Yanxian No.1.	RGN	22	76-77	2005	PIX,PIY1,PIY2	Pi-x(t), Pi-x1,Pi-y1(t), Pi-y(t), Piy1(t),Pi-y2, Pi-y2(t), Pi-y1(t), Piy2(t), Pi-y(t)
30384		Fjellstrom R, McClung AM, Shank AR	SSR Markers Closely Linked to the Pi-z Locus are Useful for Selection of Blast Resistance in a Broad Array of Rice Germplasm	Molecular Breeding	17(2)	149-157	2006	PIZT,PIZ	Piz-t, Pi-zt, Pi-z(t), Pi2/Pizt, Pizt, Pi9, OsPiz-t,Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2
30385	16791691	Hayashi K, Yoshida H, Ashikawa I.	Development of PCR-based allele-specific and InDel marker sets for nine rice blast resistance genes.	Theor. Appl. Genet.	113(2)	251-260	2006	PIZ,PITA,PIB,PIZT,PIKM,PIKP,PIT,PIK	Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2,Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30, Trx30,Pi b(Pi s), Pis, Pib, Pi-s, Pi-hy,Piz-t, Pi-zt, Pi-z(t), Pi2/Pizt, Pizt, Pi9, OsPiz-t,Pik-m, Pi-m, Pi-km, Pikm, Pi m, Pikm1-TS, Pikm2-TS, Pi-km1, Pi-km2,Pik-p, Pi-kp, Pikp, Pikp-1, Pikp-2,Pit, Pit(K59), Pit(Npb), Pi-t, PitNpb, PitK59, Pit1, OsPit1,Pik, RMg8, Pi-k, Pik-2, Pik-1, Pik1, Pik2, Pik-H4, Pikp-1, Pikh-1, Pik1-H4, Pikh-2, Pik2-H4
30387		T. Kawakatsu and Y. Nagato	PLASTOCHRON3 gene regulates leaf initiation rate and terminstion of vegetative phase.	RGN	22	36-38	2005	GO	go, go1, pla3, PLA3, PLA3/GO, OsLBD3-7, LBD3-7
30388	15912317	Lu Q, Li XH, Guo D, Xu CG, Zhang Q.	Localization of pms3, a gene for photoperiod-sensitive genic male sterility, to a 28.4-kb DNA fragment.	Molecular Genetics & Genomics (Molecular General Genetics up to 2001)	273(6)	507-511	2005	PMS3	pms3, LDMAR
30392	16091467	Nishimura A, Ashikari M, Lin S, Takashi T, Angeles ER, Yamamoto T, Matsuoka M.	Isolation of a rice regeneration quantitative trait loci gene and its application to transformation systems.	Proc. Natl. Acad. Sci. U.S.A.	102(33)	11940-11944	2005	PSR1	PSR1, NiR, OsNiR, OsNIR1, NIR1, FD-NiR, OsNiR2
30393		W.C. Li, L. Jiang, S.D. Huang, L.L. Liu, H.Q. Zhai and J.M. Wan	Fine mapping of a pollen semi-sterility gene in rice (Oryza sativa L.).	RGN	22	23-25	2005	PSS1	pss1, OsPSS1
30394		Takeuchi Y, Hayasaka H, Chiba B, Tanaka I, Shimano T, Yamagishi M, Nagano K, Sasaki T, Yano M.	Mapping Quantitative Trait Loci Controlling Cool-temperature Tolerance at Booting Stage in Temperate Japonica Rice	Breeding Science	51(3)	191-197	2001	qHD-3-1,qHD-3-2,qHD-6,qCL-1,qCL-7,qCT-1,qCT-11,qCT-7	qHD-3-1,qHD-3-1(t)(qHD-3),qHD-3-2,qHD-3-2(t)(hd3),qHD-6,qHD-6(t)(hd6),qCL-1,qCL-7,qCT-1,qCT-11,qCT-7
30400		Fujino K, Sekiguchi H.	Identification of QTLs Conferring Genetic Variation for Heading Date among Rice Varieties at the Northern-limit of Rice Cultivation	Breeding Science	55(2)	141-146	2005	-	qDTH (qDTH-1, qDTH-7)
30401	15940510	Fujino K, Sekiguchi H.	Mapping of QTLs conferring extremely early heading in rice (Oryza sativa L.).	Theor. Appl. Genet.	111(2)	393-398	2005	qDTH-7-1,qDTH-7-2	qDTH-7-1,qDTH-7-1(t)(dth7.1),qDTH-7-2,qDTH-7-2(t)(dth7.1)
30402	16791702	Zhang Y, Luo L, Xu C, Zhang Q, Xing Y.	Quantitative trait loci for panicle size, heading date and plant height co-segregating in trait-performance derived near-isogenic lines of rice (Oryza sativa).	Theor. Appl. Genet.	113(2)	361-368	2006	qHd,qGpp,qPh,-	qHd,qGpp,qPh,qSpp:
30407	16418858	Taguchi-Shiobara F, Yamamoto T, Yano M, Oka S.	Mapping QTLs that control the performance of rice tissue culture and evaluation of derived near-isogenic lines.	Theor. Appl. Genet.	112(5)	968-976	2006	qIC,qIw,qSc,qSv	qIc,qIw,qSc,qSv
30409		Takehisa H, Ueda T, Fukuta Y, Obara M, Abe T, Yano M, Yamaya T, Kameya T, Higashitani A, Sato T.	Epistatic Interaction of QTLs Controlling Leaf Bronzing in Rice (Oryza sativa L.) Grown in a Saline Paddy Field	Breeding Science	56(3)	287-293	2006	qLb-3, qLb-11	qLb-3, qLb-11
30410		Yamasaki M, Yoshimura A, Yasui H.	Genetic basis of ovicidal response to whitebacked planthopper (Sogatella furcifera Horvath) in rice (Oryza sativa L.)	Molecular Breeding	12(2)	133-143	2003	qOVA1-3,qOVA5-1,qOVA4	qOVA1-3,qOVA-1-3(t),qOVA5-1,qOVA-5-1(t),qOVA4,qOVA5-2,qOVA6 (?)
30411	16331475	Mei HW, Xu JL, Li ZK, Yu XQ, Guo LB, Wang YP, Ying CS, Luo LJ.	QTLs influencing panicle size detected in two reciprocal introgressive line (IL) populations in rice (Oryza sativa L.).	Theor. Appl. Genet.	112(4)	648-656	2006	qSBN,qPBNm,qSNP	qSBN,qPBNm,qSNP
30413		Dai L, Lin X, Ye C, Ise K, Saito K, Kato A, Xu F, Yu T, Zhang D.	Identification of Quantitative Trait Loci Controlling Cold Tolerance at the Reproductive Stage in Yunnan Landrace of Rice, Kunmingxiaobaigu	Breeding Science	54(3)	253-258	2004	qRCT3,qRCT6a,qRCT6b,qRCT7	qRCT3,qRCT6a,qRCT6b,qRCT7
30417		Sato H, Ideta O, Ando I, Kunihiro Y, Hirabayashi H, Iwano M, Miyasaka A, Nemoto H, Imbe T.	Mapping QTLs for Sheath Blight Resistance in the Rice Line WSS2	Breeding Science	54(3)	265-271	2004	qSB (qSB-3,qSB-12)	qSB (qSB-3,qSB-12)
30420	16845479	Zhang X, Zhou S, Fu Y, Su Z, Wang X, Sun C.	Identification of a drought tolerant introgression line derived from Dongxiang common wild rice (O. rufipogon Griff.).	Plant Mol. Biol.	62(1-2)	247-259	2006	qSDT12-2,qSDT2-1	qSDT12-2,qSDT2-1
30422	16614172	Konishi S, Izawa T, Lin SY, Ebana K, Fukuta Y, Sasaki T, Yano M.	An SNP caused loss of seed shattering during rice domestication.	Science	312(5778)	11392-1396	2006	QSH1,qSH11,qSH12,qSH2,qSH5	qSH1, qsh1, qSH-1, RIL1, OsRIL1 ,qSH11,qSH12,qSH2,qSH5
30430		Y. Hattori, M. Ashikari, H. Kitano and M. Matsuoka	Detection QTLs for deepwater rice ability.	RGN	22	71-72	2005	-	qTIL-4, qTIL-7, qTIL-12, qNEI-12
30436	10809440	Hu J, Reddy VS, Wessler SR.	The rice R gene family: two distinct subfamilies containing several miniature inverted-repeat transposable elements.	Plant Mol. Biol.	42(5)	667-678	2000	RA1,RB2,PSH1	Ra1,Rb2,Rb, Rb*, bhlh165, OsbHLH165, Rb2, OsPSH1, OsRb2
30438	10798615	Toyofuku K, Loreti E, Vernieri P, Alpi A, Perata P, Yamaguchi J.	Glucose modulates the abscisic acid-inducible Rab16A gene in cereal embryos.	Plant Mol. Biol.	42(3)	451-460	2000	RAB16A	Rab16A, rab21, RAB21, OsRab21, OsRAB21, OsRAB-21, OsRab16A, OsLEA29, rab16A, OsRAB16A
30439		Saika H, Matsumura H, Takano T, Tsutsumi N, Nakazono M.	A Point Mutation of Adh1 Gene is Involved in the Repression of Coleoptile Elongation under Submergence in Rice	Breeding Science	56(1)	69-74	2006	RAD	rad,rad*, OsRAD, GEN1, OsGEN-L, OsGEN1 
30445	9765537	Gesch RW, Boote KJ, Vu JC, Hartwell Allen Jr L , Bowes G.	Changes in growth CO2 result in rapid adjustments of ribulose-1, 5-bisphosphate Carboxylase/Oxygenase small subunit gene expression in expanding and mature leaves of rice	Plant Physiol.	118(2)	521-529	1998	RBCS,_	rbcS, OsRbcS, RBCS-C, RbcS2, OsRBCS2, RbcS1, OsRbcS2, OsrbcS1,rbcL
30446	11094984	Nomura M, Katayama K, Nishimura A, Ishida Y, Ohta S, Komari T, Miyao-Tokutomi M, Tajima S, Matsuoka M.	The promoter of rbcS in a C3 plant (rice) directs organ-specific, light-dependent expression in a C4 plant (maize), but does not confer bundle sheath cell-specific expression.	Plant Mol. Biol.	44(1)	99-106	2000	_	rbcS
30448	15057557	Liu XQ, Xu X, Tan YP, Li SQ, Hu J, Huang JY, Yang DC, Li YS, Zhu YG.	Inheritance and molecular mapping of two fertility-restoring loci for Honglian gametophytic cytoplasmic male sterility in rice (Oryza sativaL.).	Molecular Genetics & Genomics (Molecular General Genetics up to 2001)	271(5)	586-594	2004	RF1,RF6	Rf1 (Rf-1), rf-1, PPR791, PPR8-1, Rf-1, Rf1, Rf-1A, Rf5, Rf1a, RF5, Rf5(t)*(Rf(t)*), RF1A, PPR6, PLS31, OsPLS31,Rf6(t),Rf6(t)*, Rf5, Rf6
30450	16798940	Yamamoto MP, Onodera Y, Touno SM, Takaiwa F.	Synergism between RPBF Dof and RISBZ1 bZIP activators in the regulation of rice seed expression genes.	Plant Physiol.	141(4)	1694-1707	2006	RPBF,RISBZ1	OsDof3, OsDOF3, OsEnS-34, OsDof10, Dof10, OsDof-10, OsDOF1, DOF1, DOF3, OsRPBF, OsDOF7,OsbZIP58, bZIP58, OsEnS-92, OsSMF1, SMF1, OsRISBZ1, RISBZ1/bZIP58
30451	15947907	Fujii S, Toriyama K.	Molecular mapping of the fertility restorer gene for ms-CW-type cytoplasmic male sterility of rice.	Theor. Appl. Genet.	111(4)	696-701	2005	RMS	RFcw, RFCW, RfcwARf17
30455	16889974	Liu D, Zhang X, Cheng Y, Takano T, Liu S.	rHsp90 gene expression in response to several environmental stresses in rice (Oryza sativa L.).	Plant Physiol. Biochem.	44(5-6)	380-386	2006	HSP90	OsHsp90, rHSP90, OsHSP90, GRP94, OsGRP94
30457	10949374	Schaffrath U, Mauch F, Freydl E, Schweizer P, Dudler R.	Constitutive expression of the defense-related Rir1b gene in transgenic rice plants confers enhanced resistance to the rice blast fungus Magnaporthe grisea.	Plant Mol. Biol.	43(1)	59-66	2000	RIR1A	Rir1b, Rir1a, OsRALF-28, OsRALF28, RALF-28, RALF28, OsRIR1A, OsRIR1B
30459	16603668	Ueda M, Arimura S, Yamamoto MP, Takaiwa F, Tsutsumi N, Kadowaki K.	Promoter shuffling at a nuclear gene for mitochondrial RPL27. Involvement of interchromosome and subsequent intrachromosome recombinations.	Plant Physiol.	141(2)	702-710	2006	SPT16,S28,RPL27-1,S27,RPL27-2,_	Osspt16,S28(t), rpl27-3, rpl27, mtRPL27a,rpl27-1, rpl27, mtRPL27b, S27, S27(t), S27(t)*,S27(t), S27(t)*,rpl27-2, rpl27, mtRPL27a, S27, S27(t), S27(t)*,
30460	2381420	Shimada H, Fukuta M, Ishikawa M, Sugiura M.	Rice chloroplast RNA polymerase genes: the absence of an intron in rpoC1 and the presence of an extra sequence in rpoC2.	Molecular Genetics & Genomics (Molecular General Genetics up to 2001)	221(3)	395-402	1990	RPOC1,RPOC2	rpoC1, RPO beta', RPObeta', OsRPOC1,rpoC2, RPO beta", RPObeta"
30463	9645425	Handa H, Kubo N, Kadowaki K.	Genes for the ribosomal S4 protein encoded in higher plant mitochondria are transcribed, edited, and translated.	Molecular Genetics & Genomics (Molecular General Genetics up to 2001)	258(3)	199-207	1998	RPS4	rps4
30464	16897470	Luo H, Lee JY, Hu Q, Nelson-Vasilchik K, Eitas TK, Lickwar C, Kausch AP, Chandlee JM, Hodges TK.	RTS, a rice anther-specific gene is required for male fertility and its promoter sequence directs tissue-specific gene expression in different plant species.	Plant Mol. Biol.	62(3)	397-408	2006	RTS	RTS, RTS2
30467	11999843	Price AH, Townend J, Jones MP, Audebert A, Courtois B.	Mapping QTLs associated with drought avoidance in upland rice grown in the Philippines and West Africa.	Plant Mol. Biol.	48(5-6)	683-695	2002	RWCA,RWCW,W7LD,W7LR,W8RWC	RWCA,RWCW,W7LD,W7LR,W8RWC
30469		F. Y. Hu, P. Xu, X. N. Deng, J. W. Zhou, J. Li and D.Y. Tao	Molecular mapping of a new pollen killer gene S29(t) on chromosome 2 in Oryza glaberrima.	RGN	21	31-33	2004	S29	S29(t)
30470		D.T. Li, S.S. Zhu, L. Jiang and J.M. Wan	Mapping for a new locus causing hybrid sterility in a China landrace (Oryza sativa L.).	RGN	22	20-22	2005	S32N,S5,S32	S32n(t)(=qSS5),S5-3, S5-4,S32-kn , S32-ti ,S32-n,S32(t)(=qSS2) 
30472		G. Ren, P. Xu, X. Deng, J. Zhou, F. Hu, J. Li, F. Li, Z. Zhang and D. Tao	A new gamete eliminator from Oryza glaberrima.	RGN	22	45-47	2005	S33	S33(t)
30473		Z. Zhang, P. Xu, F. Hu, J. Zhou, J.Li, X. Deng, G. Ren, F. Li and D. Tao	A new sterile gene from Oryza glaberrima on chromosome 3.	RGN	22	26-28	2005	S34	S34(t) 
30474	16788798	Singh SP, Sundaram RM, Biradar SK, Ahmed MI, Viraktamath BC, Siddiq EA.	Identification of simple sequence repeat markers for utilizing wide-compatibility genes in inter-subspecific hybrids in rice (Oryza sativa L.).	Theor. Appl. Genet.	113(3)	509-517	2006	S5,S8	S5-3, S5-4,
30476	16177904	Qiu SQ, Liu K, Jiang JX, Song X, Xu CG, Li XH, Zhang Q.	Delimitation of the rice wide compatibility gene S5 ( n ) to a 40-kb DNA fragment.	Theor. Appl. Genet.	111(6)	1080-1086	2005	S5-N	S5-n
30477	16133303	Ji Q, Lu J, Chao Q, Gu M, Xu M.	Delimiting a rice wide-compatibility gene S5n to a 50 kb region.	Theor. Appl. Genet.	111(8)	1495-1503	2005	S5-N	S5-n
30482	14526120	Satoh H, Nishi A, Yamashita K, Takemoto Y, Tanaka Y, Hosaka Y, Sakurai A, Fujita N, Nakamura Y.	Starch-branching enzyme I-deficient mutation specifically affects the structure and properties of starch in rice endosperm.	Plant Physiol.	133(3)	1111-1121	2003	SBE1	sbe1, Rbe1. Sbe1, sbe1*(QEI), RBE1, BEI, SBE I, QEI, OsBEI, BE1, OsSBE1, OsSBEI, SBEI
30483		Murai M, Komazaki T, Sato S.	Effects of sd1 and Ur1 (Undulate rachis -1) on Lodging Resistance and Related Traits in Rice	Breeding Science	54(4)	333-340	2004	SD1	sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2, OsPHQ1, OsPHq1, PHq1
30487	10323229	Teraishi M, Okumoto Y, Hirochika H, Horibata A, Yamagata H, Tanisaka T.	Identification of mutable slender glume gene in rice (Oryza sativa L.).	Molecular Genetics & Genomics (Molecular General Genetics up to 2001)	261(1)	487-494	1999	SLG	slg, Rurm1, Urm1, OsSUMO7, SUMO7
30490	12650614	Yap MN, Lee RH, Huang YJ, Liao CJ, Chen SC.	Molecular characterization of a novel senescence-associated gene SPA15 induced during leaf senescence in sweet potato.	Plant Mol. Biol.	51(4)	471-481	2003	SPA15	SPA15
30491		Miyata M, Komori T, Yamamoto T, Ueda T, Yano M, Nitta N.	Fine Scale and Physical Mapping of Spk(t) Controlling Spreading Stub in Rice	Breeding Science	55(2)	237-239	2005	SPK	Spk(t), Spk(t)*), Spk, OsTAC1, TAC1, qTAC9 
30492	15258851	Liu G, Wang L, Zhou Z, Leung H, Wang GL, He C.	Physical mapping of a rice lesion mimic gene, Spl1 , to a 70-kb segment of rice chromosome 12.	Molecular Genetics & Genomics (Molecular General Genetics up to 2001)	272(2)	108-115	2004	SPL1	Spl1, spl1(sl,bl2), sl, bl2, spl1
30493	12395200	Zeng L, Yin Z, Chen J, Leung H, Wang GL.	Fine genetic mapping and physical delimitation of the lesion mimic gene Spl11 to a 160-kb DNA segment of the rice genome.	Molecular Genetics & Genomics (Molecular General Genetics up to 2001)	268(2)	253-261	2002	SPL11	spl11, spl11*, OsPUB11, PUB11,  OsPUB11/SPL11, PUB11/SPL11
30494	15888683	Jantasuriyarat C, Gowda M, Haller K, Hatfield J, Lu G, Stahlberg E, Zhou B, Li H, Kim H, Yu Y, Dean RA, Wing RA, Soderlund C, Wang GL.	Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction.	Plant Physiol.	138(1)	105-115	2005	SPL11	spl11, spl11*, OsPUB11, PUB11,  OsPUB11/SPL11, PUB11/SPL11
30497	11027714	Chavez-Barcenas AT, Valdez-Alarcon JJ, Martinez-Trujillo M, Chen L, Xoconostle-Cazares B, Lucas WJ, Herrera-Estrella L.	Tissue-specific and developmental pattern of expression of the rice sps1 gene.	Plant Physiol.	124(2)	641-654	2000	SPS1	sps1, OsSPS1, SPS
30498		S.G. Yao and M. Ichii	Genetic interaction between srt5 and srt6, two short-root mutations in rice (Oryza sativa L.).	RGN	21	10-13	2004	SRT5,SRT6	srt5,srt6
30500		Yu W, Wang C, Ikehashi H, Wan J.	Mapping of a Novel Gene for Semi-sterility in Rice (Oryza sativa L.)	Breeding Science	55(1)	15-20	2005	SS1	ss-1(t)
30501		Sunohara H, Miura K, Wu X, Saeda T, Mizuno S, Ashikari M, Matsuoka M, Kitano H.	Effects of Ssil Gene Controlling dm-type Internode Elongation Pattern on Lodging Resistance and Panicle Characters in Rice	Breeding Science	56(3)	261-268	2006	SSI1	Ssi1, Ssi1(Dm1)*, Dm1, Ssi1
30503	10852491	Xu K, Xu X, Ronald PC, Mackill DJ.	A high-resolution linkage map of the vicinity of the rice submergence tolerance locus Sub1.	Molecular Genetics & Genomics (Molecular General Genetics up to 2001)	263(4)	681-389	2000	SUB1	Sub1, Sub1(Sub1A,Sub1B,Sub1C), Sub1A, Sub1B, Sub1C, Sub1
30504	16816135	Fukao T, Xu K, Ronald PC, Bailey-Serres J.	A variable cluster of ethylene response factor-like genes regulates metabolic and developmental acclimation responses to submergence in rice.	Plant Cell	18(8)	2021-2034	2006	SUB1B,SUB1,SUB1A,SUB1C	Sub1B, OsSUB1B, OsERF#063, OsERF063, ERF063, OsERF63, ERF63, AP2/EREBP#166, AP2/EREBP166,Sub1, Sub1(Sub1A,Sub1B,Sub1C), Sub1A, Sub1B, Sub1C, Sub1,Sub1A, Sub1A-1, Sub1A-2, OsSUB1A,Sub1C, OsSUB1C, OsERF#073, OsERF073, ERF073, OsERF73, ERF73, AP2/EREBP#122, AP2/EREBP122, SUB1B
30506		C.Y. Yu, X.J. Wei, L.M. Chen, L. Jiang, H.Q. Zhai and J.M. Wan	Identification of a dominant suppressor of photoperiod-sensitive gene using indica/japonica backcrossed progenies in rice (Oryza sativa L.).	RGN	22	54-57	2005	SUPS6	Su-PS-6(t)
30507		Takahashi S, Ishimaru K, Yazaki J, Fujii F, Shimbo K, Yamamoto K, Sakata K, Sasaki T, Kishimoto N, Kikuchi S.	Microarray Analysis of Sink-Source Transition in Rice Leaf Sheaths	Breeding Science	55(2)	153-162	2005	RSUS2,RSUS1	sus2, RSus2(t), SUS2, SS1, OsScS1, RSs1, RSus2, OsSUS2, RSS1, RSus1, OsSusy2, Susy2, OsRSUS1, RSUS1,sus1, RSus1(t), SUS1, SS2, OsScS2, RSs2, RSus1, SuSy1, OsSUS1, RSS2, RSus2, OsRSUS1
30510		E. Yamamoto, M. Ashikari, T. Suzuka, A. Miyao, H. Hirochika, H. Kitano and M. Matsuoka	Characterization and mapping of tillering dwarf rice 1, tdr1.	RGN	22	42-44	2005	TDR1	tdr1
30511		Y. Hasegawa, E. Yamamoto, M. Ashikari, T. Sazuka, A. Miyao, H. Hirochika, H. Kitano and M. Matsuoka	Characterization and mapping of tillering dwarf rice 2, tdr2.	RGN	22	48-49	2005	TDR2	tdr2
30512	14576284	Ishimaru K.	Identification of a locus increasing rice yield and physiological analysis of its function.	Plant Physiol.	133(3)	1083-1090	2003	TGW6	tgw6, OsSTRL7, STRL7, OsSSL4, SSL4
30513	16133314	Lee DS, Chen LJ, Suh HS.	Genetic characterization and fine mapping of a novel thermo-sensitive genic male-sterile gene tms6 in rice (Oryza sativa L.).	Theor. Appl. Genet.	111(7)	1271-1277	2005	TMS6	tms6
30514	1685658	Umeda M, Ohtsubo H, Ohtsubo E.	Diversification of the rice Waxy gene by insertion of mobile DNA elements into introns	Jpn. J. Genet.	66(5)	569-586	1991	TNR1	Tnr1
30516	11361345	Yamazaki M, Tsugawa H, Miyao A, Yano M, Wu J, Yamamoto S, Matsumoto T, Sasaki T, Hirochika H.	The rice retrotransposon Tos17 prefers low-copy-number sequences as integration targets.	Molecular Genetics & Genomics (Molecular General Genetics up to 2001)	265(2)	336-344	2001	TOS17	Tos17, Osr21, Tos17chr10, Tos17_Chr10, Tos17chr7, Tos17_Chr7
30517	16821043	Cheng C, Daigen M, Hirochika H.	Epigenetic regulation of the rice retrotransposon Tos17.	Molecular Genetics & Genomics (Molecular General Genetics up to 2001)	276(4)	378-390	2006	TOS17	Tos17, Osr21, Tos17chr10, Tos17_Chr10, Tos17chr7, Tos17_Chr7
30521		K. Asano, K. Miura, Y. Hasegawa, H. Hirochika, M. Ashikari, H. Kitano, M. Matsuoka and Y. R. Lin	Mapping of the TINY RICE 1 gene, TR1.	RGN	21	19-21	2004	TR1	tr1
30523		Y. Hattori, M. Kaneko, M. Ashikari, M. Matsuoka and K. Hattori	Mapping of the TEMPERATURE SENSITIVE gene, TS.	RGN	22	68-70	2005	TS	
30525		Masayuki Murai,Tomoaki Komazaki,Shigetoshi Sato	Effects of sd1 and Url1(Undulate rachis -1) on Lodging Resisitance and Related Traits in Rice	Breeding Science	54(4)	333-340	2004	UR1	Ur1
30526		Murai M, Nakamura K, Saito M, Nagayama A, Ise K.	Yield-increasing Effect of a Major Gene, Ur1 (Undulate rachis-1) on Different Genetic Backgrounds in Rice	Breeding Science	55(3)	279-285	2005	UR1	Ur1
30530	11244118	Isshiki M, Yamamoto Y, Satoh H, Shimamoto K.	Nonsense-mediated decay of mutant waxy mRNA in rice.	Plant Physiol.	125(3)	1388-1395	2001	WX1	wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx
30532	14730444	Chu Z, Ouyang Y, Zhang J, Yang H, Wang S.	Genome-wide analysis of defense-responsive genes in bacterial blight resistance of rice mediated by the recessive R gene xa13.	Molecular Genetics & Genomics (Molecular General Genetics up to 2001)	271(1)	111-120	2004	XA13	xa13, Xa13, Os8N3, Os-8N3, 8N3, OsSWEET11, SWEET11, OsSWEET11/Xa13, Xa13/Os8N3/SWEET11, Os8N3/Xa13, OsSWEET11/Os8N3, OsSWEET11a, SWEET11a
30533	16328230	Chu Z, Fu B, Yang H, Xu C, Li Z, Sanchez A, Park YJ, Bennetzen JL, Zhang Q, Wang S.	Targeting xa13, a recessive gene for bacterial blight resistance in rice.	Theor. Appl. Genet.	112(3)	455-461	2006	XA13	xa13, Xa13, Os8N3, Os-8N3, 8N3, OsSWEET11, SWEET11, OsSWEET11/Xa13, Xa13/Os8N3/SWEET11, Os8N3/Xa13, OsSWEET11/Os8N3, OsSWEET11a, SWEET11a
30534		He Q, Li D, Zhu Y, Tan M, Zhang D, Lin X.	Fine Mapping of Xa2, a Bacterial Blight Resistance Gene in Rice	Molecular Breeding	17(1)	1-6	2006	XA2	Xa2
30535	11370857	Wang W, Zhai W, Luo M, Jiang G, Chen X, Li X, Wing RA, Zhu L.	Chromosome landing at the bacterial blight resistance gene Xa4 locus using a deep coverage rice BAC library.	Molecular Genetics & Genomics (Molecular General Genetics up to 2001)	265(1)	118-125	2001	XA4	Xa4, Xa4(Xa4a), Xa-4, Xa4-a, WAK, wak, xa4
30536	16614777	Jiang GH, Xia ZH, Zhou YL, Wan J, Li DY, Chen RS, Zhai WX, Zhu LH.	Testifying the rice bacterial blight resistance gene xa5 by genetic complementation and further analyzing xa5 (Xa5) in comparison with its homolog TFIIAgamma1.	Molecular Genetics & Genomics (Molecular General Genetics up to 2001)	275(4)	354-366	2006	XA5	xa5, xa-5, Xa5, TFIIAy, OsTFIIAgamma5, TFIIAgamma5, OsTFIIAgamma5/Xa5
30537	14988479	Yokoyama R, Rose JK, Nishitani K.	A surprising diversity and abundance of xyloglucan endotransglucosylase/hydrolases in rice. Classification and expression analysis.	Plant Physiol.	134(3)	1088-1099	2004	XTH21,XTH29,XTH8,XTH2,XTH12,XTH13,XTH14,XTH18,XTH22,XTH24,XTH25,XTH26,XTH3,XTH4,XTH5,XTH6,XTH7,XTH20,XTH27,XTH19,XTH28,XTH11,XTH17,XTH10,XTH16,XTH23,XTH15,XTH1,XTH9	OsXTH21,OsXTH29,OsXTH8, OsSTA207,OsXTH2, XTR1, OsXTR1,OsXTH12,OsXTH13,OsXTH14,OsXTH18,OsXTH22,OsXTH24,OsXTH25,OsXTH26,OsXTH3, XTR4, OsXTR4,OsXTH4,OsXTH5,OsXTH6,OsXTH7,OsXTH20, XET32,OsXTH27, XTH,OsXTH19,OsXTH28,OsXTH11, XTR2, OsXTR2, Meri-5,OsXTH17, OsXTH8, XTH8,OsXTH10,OsXTH16,OsXTH23, XTR3, OsXTR3,OsXTH15, DEFL9, OsDEFL9,OsXTH1,OsXTH9, OsXET9, XTH1, OsXTH1
30538		Uchimiya H , Fujii S, Huang J, Fushimi T, Nishioka M,  Kim KM, Kawai Yamada M, Kurusu T, Kuchitsu K, Tagawa M.	Transgenic rice plants conferring increased tolerance to rice blast and multiple environmental stresses	Molecular Breeding	9(1)	25-31	2002	YK1	YK1
30539	15863611	Hayashi M, Takahashi H, Tamura K, Huang J, Yu LH, Kawai-Yamada M, Tezuka T, Uchimiya H.	Enhanced dihydroflavonol-4-reductase activity and NAD homeostasis leading to cell death tolerance in transgenic rice.	Proc. Natl. Acad. Sci. U.S.A.	102(19)	7020-7025	2005	YK1	YK1
30540	16528562	Ryu,H.S., Han,M., Lee,S.K., Cho,J.I., Ryoo,N., Heu,S., Lee,Y.H., Bhoo,S.H., Wang,G.L., Hahn,T.R. and Jeon,J.S.	A comprehensive expression analysis of the WRKY gene superfamily in rice plants during defense response.	Plant Cell Rep.	25(8)	836-847	2006	WRKY39,WRKY51,WRKY2,WRKY19,WRKY52,WRKY9,WRKY60,WRKY41,WRKY53,WRKY96,WRKY31,WRKY38,WRKY29,PHB1,WRKY69,WRKY94,WRKY30,WRKY43,WRKY1,WRKY68,WRKY65,WRKY46,WRKY72,WRKY33,WRKY21,WRKY34,WRKY23,WRKY37,WRKY11,WRKY40,WRKY20,WRKY54,WRKY4,WRKY5,WRKY28,WRKY64,SGSD3,WRKY77,WRKY24,WRKY27,WRKY10,WRKY66,WRKY26,WRKY49,WRKY3,WRKY76,WRKY90,WRKY32,WRKY45,WRKY15,WRKY35,WRKY67,WRKY14,WRKY75,WRKY17,WRKY58,WRKY8,WRKY22,WRKY57,WRKY55,WRKY16,WRKY25,WRKY7,WRKY50,WRKY42,WRKY48,WRKY61,WRKY70,WRKY73,WRKY18,WRKY12,WRKY56,WRKY81,WRKY74,WRKY6,WRKY87,WRKY47,WRKY102,WRKY13,WRKY62,WRKY89	OsWRKY39,OsWRKY51,OsWRKY2,OsWRKY19,OsWRKY52,OsWRKY9,OsWRKY60,OsWRKY41, WRKY63, OsWRKY63,OsWRKY53, WRKY-53,OsWRKY96,OsWRKY31,OsWRKY38,OsWRKY29,OsPHB1,OsWRKY69,OsWRKY94,OsWRKY30,OsWRKY43,OsWRKY1, OsWRKY1v2,OsWRKY68,OsWRKY65,OsWRKY46, WRKY91, OsWRKY91,OsWRKY72, WRKY-72,OsWRKY33,OsWRKY21,OsWRKY34,OsWRKY23,OsWRKY37,OsWRKY11, Dlf1, OsWRKY11.1, OsWRKY11.2,OsWRKY40,OsWRKY20,OsWRKY54,OsWRKY4, WRKY122, OsWRKY122,OsWRKY5 ,OsWRKY28, DLN170, OsDLN170,OsWRKY64,OsWRKY36, WRKY36, OsSGSD3,OsWRKY77, WRKY-77,OsWRKY24,OsWRKY27,OsWRKY10,OsWRKY66,OsWRKY26, OsWRKY59, DLN19, OsDLN19,OsWRKY49,OsWRKY3 ,OsWRKY76, OsWRKY76.1, OsWRKY76.2, OsWRKY76.3,OsWRKY90,OsWRKY32,OsWRKY45, OsWRKY45-1, OsWRKY45-2, WRKY45-1, WRKY45-2,OsWRKY15,OsWRKY35,OsWRKY67,OsWRKY14,OsWRKY75,OsWRKY17,OsWRKY58,OsWRKY8,OsWRKY22,OsWRKY57,OsWRKY55,OsWRKY16,OsWRKY25, OsWRKY44, WRKY44,OsWRKY7,OsWRKY50,OsWRKY42, WRKY-42,OsWRKY48,OsWRKY61, OsWRKY103, WRKY103,OsWRKY70,OsWRKY73,OsWRKY18,OsWRKY12,OsWRKY56,OsWRKY81, OsWRKY33,OsWRKY74,OsWRKY6, WRKY-6, DLN103, OsDLN103,OsWRKY87, OsSUSIBA2-like,OsWRKY47,OsWRKY102,OsWRKY13,OsWRKY62, OsWRKY62.1, OsWRKY62.2, XB10, OsWRKY62-1, OsWRKY62-2,OsWRKY89
30541	12081375	Guiderdoni E, Cordero MJ, Vignols F, Garcia-Garrido JM, Lescot M, Tharreau D, Meynard D, Ferri	Inducibility by pathogen attack and developmental regulation of the rice Ltp1 gene.	Plant Mol. Biol.	49(6)	683-699	2002	LTP1	Ltp1
30543	16085936	Xu M, Zhu L, Shou H, Wu P.	A PIN1 family gene, OsPIN1, involved in auxin-dependent adventitious root emergence and tillering in rice.	Plant Cell Physiol.	46(10)	1674-81	2005	PIN10B,PIN1C,LRA1,PIN10A,PIN1A,PIN1B	PIN3B, OsPIN3b, OsPIN10b,PIN1B, OsPIN1B, OsPIN1b, OsPIN1c,OsPIN2, PIN2, OsLRA1, WAR1, OsWAR1,PIN3A, OsPIN3a, OsPIN3t, OsPIN10a, OsPIN3,PIN1C, OsPIN1C, OsPIN1c, OsPIN1a,PIN1A, OsPIN1A, OsPIN1a, REH1, OsPIN1, OsPIN1b, REH1/OsPIN1
30550	17446351	Tamaki S, Matsuo S, Wong HL, Yokoi S, Shimamoto K.	Hd3a Protein Is a Mobile Flowering Signal in Rice	Science	316(5827)	1033 - 1036	2007	HD3A	Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a 
30551	11598221	Nishi A, Nakamura Y, Tanaka N, Satoh H	Biochemical and genetic analysis of the effects of amylose-extender mutation in rice endosperm	Plant Physiol.	127(2)	459-72	2001	SSI,SBE4,SBE1,AE,SBE3	OsSSI, SSS 1, SSS1, SS1, OsSS1, SSSI, OsSSSI,RBE4, OsSBE4, BEIIa, QEIIb, BEIIA, OsBEIIa,sbe1, Rbe1. Sbe1, sbe1*(QEI), RBE1, BEI, SBE I, QEI, OsBEI, BE1, OsSBE1, OsSBEI, SBEI,ae,SBEIII*, SBEIII, Sbe3, RBE3, QEIIa, QEIIA, BEIIb, BEIIB, SBEIIb, OsBEIIb, sbe3, SBE III, OsSBEIIb, SBEIIb
30552	17297616	Ryoo N, Yu C, Park CS, Baik MY, Park IM, Cho MH, Bhoo SH, An G, Hahn TR, Jeon JS.	Knockout of a starch synthase gene OsSSIIIa/Flo5 causes white-core floury endosperm in rice (Oryza sativa L.).	Plant Cell Rep.	26(7)	1083-95	2007	ALK,SSIIIB,SSIIB,SSIVA,SSIVB,SSIIC,SSI,FLO5	alk, SSII-3, OsSSIIa, OsSSII-3, SSIIa, SSS2A, OsSSIIaChr6, SS2a,OsSSIIIb. SSIII-1, SSIIIa,OsSSIIb, OsSSII-2, SSII-2, SS2, OsSSSIIb, SS2b,OsSSIVa, SSIV-1, OsSSIV-1,OsSSIVb, SSIV-2, OsSSIV-2, SSIVb, SSIV-2, SSIV2, OsSSIV2,OsSSIIc, SSII-1, SSII1 ,OsSSI, SSS 1, SSS1, SS1, OsSS1, SSSI, OsSSSI,OsSSIIIa, SSIII-2, OsSSIII-2, OsSS3A, SS3A, SS3a, OsSSSIIIa, SSIIIa, Flo5
30553	15232694	Hirose T, Terao T.	A comprehensive expression analysis of the starch synthase gene family in rice (Oryza sativa L.).	Planta.	220(1)	9-16	2004	ALK,SSIIIB,WX1,SSIVA,SSIVB,SSIIB,SSIIC,GBSSII,FLO5,SSI	alk, SSII-3, OsSSIIa, OsSSII-3, SSIIa, SSS2A, OsSSIIaChr6, SS2a,OsSSIIIb. SSIII-1, SSIIIa,wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx,OsSSIVa, SSIV-1, OsSSIV-1,OsSSIVb, SSIV-2, OsSSIV-2, SSIVb, SSIV-2, SSIV2, OsSSIV2,OsSSIIb, OsSSII-2, SSII-2, SS2, OsSSSIIb, SS2b,OsSSIIc, SSII-1, SSII1 ,GBSS2, OsGBSSII, OsGBSS2,OsSSIIIa, SSIII-2, OsSSIII-2, OsSS3A, SS3A, SS3a, OsSSSIIIa, SSIIIa, Flo5,OsSSI, SSS 1, SSS1, SS1, OsSS1, SSSI, OsSSSI
30560	17804793	Nagasaki H, Itoh J, Hayashi K, Hibara K, Satoh-Nagasawa N, Nosaka M, Mukouhata M, Ashikari M, Kitano H, Matsuoka M, Nagato Y, Sato Y.	The small interfering RNA production pathway is required for shoot meristem initiation in rice.	Proc. Natl. Acad. Sci. U.S.A.	104(37)	14867-71	2007	HOX9,miR166,SHL2,SHL1,PR4,LF1,SHL4,SHO1,SHO2	Oshox9, OsHox9, OsHB2, HB2, OSHB2, OsHDZ37, OsHDZIP37, HDZ37, HDZIP37,miR166,shl2, SHL2, sh2, OsRDR6, RDR6,shl1, sh1,OsPR4, OsPR4a, PR4a, OsPR-4,HOX10, Oshox10, OsHox10, OsHB1, HB1, OSHB1, LF1/OsHB1, OsLF1, OsHDZ9, OsHDZIP9, HDZ9, HDZIP9,shl4, sh4, OsAGO7, SHO2, AGO7, SHL4/SHO2,sho1, DCL4, OsDCL4, Os DCL4, Dcl4 ,sho2
30561		S. Hortensteiner	Chlorophyll degradation during senescence	Annu. Rev. Plant Biol.	57	55-77	2006	SGR	sgr(t), sgr, OsSGR, OsSgr, SGR1, OsSGR1
30562	17204643	Armstead I, Donnison I, Aubry S, Harper J, Hortensteiner S, James C, Mani J, Moffet M, Ougham H, Roberts L, Thomas A, Weeden N, Thomas H, King I.	Cross-species identification of Mendel's I locus.	Science	315	73	2007	SGR	sgr(t), sgr, OsSGR, OsSgr, SGR1, OsSGR1
30563	17513504	Park SY, Yu JW, Park JS, Li J, Yoo SC, Lee NY, Lee SK, Jeong SW, Seo HS, Koh HJ, Jeon JS, Park YI, Paek NC.	The senescence-induced staygreen protein regulates chlorophyll degradation .	Plant Cell	19(5)	649-1664	2007	SGR	sgr(t), sgr, OsSGR, OsSgr, SGR1, OsSGR1
30564	17714430	Jiang H, Li M, Liang N, Yan H, Wei Y, Xu X, Liu J, Xu Z, Chen F, Wu G.	Molecular cloning and function analysis of the stay green gene in rice.	Plant J.	52(2)	197-209	2007	SGR	sgr(t), sgr, OsSGR, OsSgr, SGR1, OsSGR1
30565	17709752	Sato Y, Morita R, Nishimura M, Yamaguchi H, Kusaba M.	Mendel's green cotyledon gene encodes a positive regulator of the chlorophyll-degrading pathway.	Proc. Natl. Acad. Sci. U.S.A.	104	14169	2007	CHL,SGR,NYC1	OsCHL,sgr(t), sgr, OsSGR, OsSgr, SGR1, OsSGR1,nyc1, OsNYC1
30566	17675402	Nonomura K, Morohoshi A, Nakano M, Eiguchi M, Miyao A, Hirochika H, Kurata N.	A germ cell specific gene of the ARGONAUTE family is essential for the progression of premeiotic mitosis and meiosis during sporogenesis in rice.	Plant Cell	19(8)	2583-94	2007	MEL1	mel1, OsMEL1, MEAL1, OsMEAL1, OsAGO5c 
30567	17999151	Agalou,A., Purwantomo,S., Overnas,E., Johannesson,H., Zhu,X., Estiati,A., de Kam,R.J., Engstrom,P., Slamet-Loedin,I.H., Zhu,Z., Wang,M., Xiong,L., Meijer,A.H. and Ouwerkerk,P.B.	A genome-wide survey of HD-Zip genes in rice and analysis of drought-responsive family members	Plant Mol. Biol.	66(1-2)	87-103	2008	HOX8,HOX24,HOX22,HOX20,HOX12,HOX17,HOX7,HOX28,HOX27,HOX11,HOX25,HOX6,HOX15,HOX23,HOX26,HB4,LF1,HOX16,HOX4,SGD2,HOX33,HOX9,HOX1,HOX29,HOX21,HOX5,HOX30,HOX31,HOX14,HOX18,HOX2,HOX13,HOX19	Oshox8, OsHDZ35, OsHDZIP35, HDZ35, HDZIP35,Oshox24, OsHox24, OsSLI1, OsHDZ6, OsHDZIP6, HDZ6, HDZIP6,Oshox22, OsHox22, OsHDZ14, OsHDZIP14, HDZ14, HDZIP14,Oshox20, OsHox20, OsHDZ28, OsHDZIP28, HDZ28, HDZIP28,Oshox12, OsHox12,Oshox17, OsHox17, OsHDZ15, OsHDZIP15, HDZ15, HDZIP15,Oshox7, OsHox7, OsHDZ5, OsHDZIP5, HDZ5, HDZIP5,Oshox28, OsHox28, OsHDZ18, OsHDZIP18, HDZ18, HDZIP18,Oshox27, OsHox27, OsHDZ27, OsHDZIP27, HDZ27, HDZIP27,Oshox11, OsHox11, OsHDZ30, OsHDZIP30, HDZ30, HDZIP30,Oshox25, OsHox25, OsHDZ29, OsHDZIP29, HDZ29, HDZIP29,Oshox6, OsHox6, OsHDZ33, OsHDZIP33, HDZ33, HDZIP33,Oshox15, OsHox15, OsHDZ34, OsHDZIP34, HDZ34, HDZIP34,Oshox23, OsHox23, OsHDZ36, OsHDZIP36, HDZ36, HDZIP36,Oshox26, OsHDZ4, OsHDZIP4, HDZ4, HDZIP4,OSHB4, OsHox32, HOX32, OsHB4, Oshox32, PHB3, OsHDZ13, OsHDZIP13, HDZ13, HDZIP13,HOX10, Oshox10, OsHox10, OsHB1, HB1, OSHB1, LF1/OsHB1, OsLF1, OsHDZ9, OsHDZIP9, HDZ9, HDZIP9,Oshox16, OsHox16, OsHDZ8, OsHDZIP8, HDZ8, HDZIP8,Oshox4, OsHox4, OsHDZ31, OsHDZIP31, HDZ31, HDZIP31,HOX3, Oshox3, OsHox3, OsHDZ1, HDZ1, OsHDZIP1, HDZIP1,Oshox33, OsHox33, OSHB3, HB3, SIP22, OsSIP22, OsHDZ40, OsHDZIP40, HDZ40, HDZIP40,Oshox9, OsHox9, OsHB2, HB2, OSHB2, OsHDZ37, OsHDZIP37, HDZ37, HDZIP37,Oshox1, OsHox1, OsHDZ38, OsHDZIP38, HDZ38, HDZIP38,Oshox29, OsHox29, OSHB5, HB5,Oshox21, OsHox21, OsHDZ10, OsHDZIP10, HDZ10, HDZIP10,Oshox5, OsHox5, EIP9, OsHDZ25, OsHDZIP25, HDZ25, HDZIP25,  OsHDZ26, OsHDZIP26, HDZ26, HDZIP26,Oshox30,Oshox31,Oshox14, OsHox14,Oshox18, OsHox18, OsHDZ21, OsHDZIP21, HDZ21, HDZIP21,Oshox2, OsHox2, OsHDZ19, OsHDZIP19, HDZ19, HDZIP19,Oshox13, OsHox13, OsHDZ11, OsHDZIP11, HDZ11, HDZIP11,Oshox19, OsHox19, OsHDZ12, OsHDZIP12, HDZ12, HDZIP12
30568	7915966	Akagi,H., Sakamoto,M., Shinjyo,C., Shimada,H. and Fujimura,T.	A unique sequence located downstream from the rice mitochondrial atp6 may cause male sterility	Curr. Genet.	25(1)	52-58	1994	RF1,_,_	Rf1 (Rf-1), rf-1, PPR791, PPR8-1, Rf-1, Rf1, Rf-1A, Rf5, Rf1a, RF5, Rf5(t)*(Rf(t)*), RF1A, PPR6, PLS31, OsPLS31,ORF79, orf79,atp6, N-atp6, B-ATP6, B-atp6, atp6-1
30569	8595659	Akagi,H., Shimada,H. and Fujimura,T.	High-frequency inter-parental recombination between mitochondrial genomes of rice cybrids	Curr. Genet.	29(1)	58-65	1995	_,_,NAD5	atp6, N-atp6, B-ATP6, B-atp6, atp6-1,ORF79, orf79,nad5, OsNAD5
30570	12527425	Al Bitar,F., Roosens,N., Smeyers,M., Vauterin,M., Van Boxtel,J., Jacobs,M. and Homble,F.	Sequence analysis, transcriptional and posttranscriptional regulation of the rice vdac family	Biochim. Biophys. Acta	1625(1)	43-51	2003	VDAC1,_,_,_	OSVDAC1, osvdac1, OsVDAC1,OSVDAC3, osvdac3, OsVDAC3, VDAC3,OSVDAC4, osvdac4, OsVDAC4, VDAC4,OSVDAC2, osvdac2, OsVDAC2, VDAC2
30571	0	Attasart,P. and Sonthayanon,B.	Partial sequence of chloroplast 23S ribosomal RNA from indica rice	J. Sci. Soc. Thailand	22	89-94	1996	23S  rRNA	rrn23
30572	18197419	Bao,Y.M., Wang,J.F., Huang,J. and Zhang,H.S.	Cloning and characterization of three genes encoding Qb-SNARE proteins in rice	Mol. Genet. Genomics	279(3)	291-301	2008	NPSN11,NPSN12,NPSN13	OsNPSN11, OryzaNPSN11,OsNPSN12, OryzaNPSN12,OsNPSN13, OryzaNPSN13
30573	17380428	Bao,Y.M., Wang,J.F., Huang,J. and Zhang,H.S.	Molecular cloning and characterization of a novel SNAP25-type protein gene OsSNAP32 in rice (Oryza sativa L.)	Mol. Biol. Rep.	35(2)	145-152	2008	SNAP32	OsSNAP32
30574	17898986	Boisnard,A., Albar,L., Thiemele,D., Rondeau,M. and Ghesquiere,A.	Evaluation of genes from eIF4E and eIF4G multigenic families as potential candidates for partial resistance QTLs to Rice yellow mottle virus in rice	Theor. Appl. Genet.	116(1)	53-62	2007	EIF4G,EIF4E	,eIF(iso)4E
30575	18491070	Bourgis,F., Guyot,R., Gherbi,H., Tailliez,E., Amabile,I., Salse,J., Lorieux,M., Delseny,M. and Ghesquiere,A.	Characterization of the major fragance gene from an aromatic japonica rice and analysis of its diversity in Asian cultivated rice	Theor. Appl. Genet.	117(3)	353-368	2008	SK2(T)(SCL, FGR)	sk2(t)(scl, fgr), fgr, scl, BAD2, BADH2, sk2, OsBADH2, Badh2, badh2, Os2AP, BADH-2, OsALDH10A8, ALDH10A8 
30576	0	Chaban,C.	Phytochrome response in rice coleoptile - just a matter of auxin?	Thesis  Department of Botany, University of Freiburg, Freiburg, Germany			2002		
30577	18397370	Chaikam,V. and Karlson,D.	Functional characterization of two cold shock domain proteins from Oryza sativa	Plant Cell Environ.	31(7)	995-1006	2008	CSP1,_	OsCSP1,OsCSP2, CPS2
30578	0	Chantarangsee,M., Tanthanuch,W., Fujimura,T., Fry,S.C. and Ketudat Cairns,J.	Molecular characterization of beta-galactosidases from germinating rice (Oryza sativa)	Plant Sci.	173(2)	118-134	2007	BGAL1,BGAL2,BGAL3,BGAL4,BGAL9,BGAL10,BGAL11,BGAL12,BGAL13,BGAL15,BGAL8,BGAL7,BGAL14,BGAL6,BGAL5	OsBgal1, beta-gal, OsBGal1,OsBgal2, OsBGal2,OsBgal3, OsBGal3,OsBgal4, OsBGal4,OsBgal9, OsBGal9,OsBgal10, OsBGal10,OsBgal11, OsBGal11,OsBgal12, OsBGal12,OsBgal13, OsBGal13,OsBgal15, OsBGal15,OsBgal8, OsBGal8,OsBgal7, OsBGal7, CARSR12,OsBgal14, OsBGal14, OsEnS-135, OsMEG2, MEG2,OsBgal6, OsBGal6,OsBgal5, OsBGal5, RMP1 
30580	0	Chen,J.		Thesis  Department of Biological Sciences, University of Cambridge, Cambridge, United Kingdom			2002		
30581	18182423	Cheung,M.Y., Zeng,N.Y., Tong,S.W., Li,F.W., Zhao,K.J., Zhang,Q., Sun,S.S. and Lam,H.M.	Expression of a RING-HC protein from rice improves resistance to Pseudomonas syringae pv. tomato DC3000 in transgenic Arabidopsis thaliana	J. Exp. Bot.	58(15-16)	4147-4159	2007	LE	OsRHC1, RHC1, OsLE, TT3.1, OsTT3.1,  OsRING133, RING133, DGS1, OsDGS1
30582	18596114	Cheung,M.Y., Zeng,N.Y., Tong,S.W., Wing-Yen Li,F., Zhao,K.J., Zhang,Q., Sai-Ming Sun,S. and Lam,H.M.	Expression of a RING-HC protein from rice improves resistance to Pseudomonas syringae pv. tomato DC3000 in transgenic Arabidopsis thaliana	J. Exp. Bot.	59(10)	2903	2008	LE	OsRHC1, RHC1, OsLE, TT3.1, OsTT3.1,  OsRING133, RING133, DGS1, OsDGS1
30583	17383991	Chhun,T., Uno,Y., Taketa,S., Azuma,T., Ichii,M., Okamoto,T. and Tsurumi,S.	Saturated humidity accelerates lateral root development in rice (Oryza sativa L.) seedlings by increasing phloem-based auxin transport	J. Exp. Bot.	58(7)	1695-1704	2007	RAU2,RAU1,RAU3,RAU4	OsLAX2, OsRAU2, OsAUX3, LAX2, AUX3 ,OsLAX1, OsRAU1, OsAUX1, LAX1, AUX1,OsLAX3, OsRAU3, OsAUX2, LAX3, AUX2, OsAUX3, AUX3, ARF2,OsLAX4, OsRAU4, OsAUX4, LAX4, AUX4
30584	1392595	Christopher,D.A., Kim,M. and Mullet,J.E.	A novel light-regulated promoter is conserved in cereal and dicot chloroplasts	Plant Cell	4(7)	785-798	1992	PSBC,PSBD	psbC, cp43, OsPSBC, OsCP43,psbD, D2, OsPsbD1, OsPsbD2
30585	18175928	Chujo,T., Kato,T., Yamada,K., Takai,R., Akimoto-Tomiyama,C., Minami,E., Nagamura,Y., Shibuya,N., Yasuda,M., Nakashita,H., Umemura,K., Okada,A., Okada,K., Nojiri,H. and Yamane,H.	Characterization of an elicitor-induced rice WRKY gene, OsWRKY71	Biosci. Biotechnol. Biochem.	72(1)	240-245	2008	WRKY71,_,_,_,_,_,_,_,RIXI ,_	OsWRKY71, WRKY-71,C10122,,,,prx66,RCB4,OsLP, PR-5, 14b,C10701,POD2, OsPOD2, PRX13, OSPRX13
30586	17532485	Chujo,T., Takai,R., Akimoto-Tomiyama,C., Ando,S., Minami,E., Nagamura,Y., Kaku,H., Shibuya,N., Yasuda,M., Nakashita,H., Umemura,K., Okada,A., Okada,K., Nojiri,H. and Yamane,H.	Involvement of the elicitor-induced gene OsWRKY53 in the expression of defense-related genes in rice	Biochim. Biophys. Acta	1769(7-8)	497-505	2007	WRKY53	OsWRKY53, WRKY-53
30588	3057446	Cote,J.C. and Wu,R.	Sequence of the chloroplast psbF gene encoding the Photosystem II 10 kDa phosphoprotein from Oryza sativa L	Nucleic Acids Res.	16(21)	10384	1988	PSBH	psbH, psbF 
30589	2922301	Cote,J.C. and Wu,R.	Sequence of the chloroplast rps14 gene encoding the chloroplast ribosomal protein S14 from rice	Nucleic Acids Res.	17(4)	1780	1989	RPS14	rps14 
30590	0	Cote,J.-C., Wu,N.-H. and Wu,R.	Nucleotide sequence of the rice chloroplast apocytochrome b6 gene (petB)	Plant Mol. Biol.	11	873-874	1988	PETB	petB, OsPETB
30591	17555605	Ding,J., Araki,H., Wang,Q., Zhang,P., Yang,S., Chen,J.Q. and Tian,D.	Highly asymmetric rice genomes	BMC Genomics	8(1)	154	2007	_,PI304,IDH,TPI,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,PITA,PI37,_,_,_,_,_,_,_,_,_,_,_,_,_,ASA1,_,PI64,_,PISH	,OsPi304,OsIDH,tpi*, tips, TI, OsTPI1, TPI1, OsTPI1.1, OsTPI1.2 ,OsIFCC035751,OsIFCC043050,OsIFCC023444,OsIFCC026523,OsIFCC019895,OsIFSC046156,OsIFCC040819,,,OsIFSC047991,,,,OsIFCC009208,OsIFCC035754,Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30, Trx30,Pi37(t), Pi37,,,,,,,,,,,OsIFCC045542,OsIFCC035229,,OASA1 (=ASA1), OsASA1, OASA1, OASA1(D323N), OASA1D,,Pi64,,Pi sh, Pish, Pi-sh, Pish(t)
30592	18192436	Ding,X., Cao,Y., Huang,L., Zhao,J., Xu,C., Li,X. and Wang,S.	Activation of the Indole-3-Acetic Acid-Amido Synthetase GH3-8 Suppresses Expansin Expression and Promotes Salicylate- and Jasmonate-Independent Basal Immunity in Rice	Plant Cell	20(1)	228-240	2008	GH3-8	OsGH3-8, OsMGH3, OsGH3.8, GH3.8, OsGH3-2
30593	0	Ding,Z.-J., Wang,T., Chong,K. and Bai,S.-N.	Isolation and characterization of OsDMC1, the rice homologue of the yeast DMC1 gene essential for meiosis	Sex. Plant Reprod.	13	285-288	2001	DMC1A	OsDMC1A, OsDmc1A, Dmc1A, DMC1, OsDMC1, RiLIM15A, OsRad51
30594	0	Doyle,J.A., Donoghue,M.J. and Zimmer,E.A.	Integration of morphological and ribosomal RNA data on the origin of angiosperms	Ann. Mo. Bot. Gard.	81(3)	419-450	1994	28S rRNA,18S rRNA	28S rRNA,18S rRNA
30595	18293011	Fujino,K., Matsuda,Y., Ozawa,K., Nishimura,T., Koshiba,T., Fraaije,M.W. and Sekiguchi,H.	NARROW LEAF 7 controls leaf shape mediated by auxin in rice	Mol. Genet. Genomics	279(5)	499-507	2008	YUCCA2,YUCCA9,YUCCA10,YUCCA13,YUCCA14,YUCCA12,YUCCA11,YUCCA4,YUCCA7,YUCCA5,YUCCA6,YUCCA3,COW1,YUCCA1	OsYUCCA2, OsYUC2, YUC2,OsYUCCA9, OsYUC9, YUC9,OsYUCCA10, OsYUC10,OsYUCCA13, OsYUC13,OsYUCCA14, OsYUC14,OsYUCCA12, OsYUC12, YUC12,OsYUCCA11, OsYUC11, YUC11,OsYUCCA4, OsYUC4, YUC4, YUCCA6, OsYUCCA6,OsYUCCA7, OsYUC7, OsYUC5, YUC5, YUC7,OsYUCCA5, OsYUC5, YUC5,OsYUCCA6, OsYUC6, YUC6,OsYUCCA3, OsYUC3, YUC3,OsCOW1, oscow1, OsYUC8, YUC8, NAL7, OsNAL7, OsYUCCA8, YUCCA8, FMO, OsFMO(t), REIN7, YUC8/REIN7,OsYUCCA1, OsYUC1, YUC1
30596	18719107	Fujino,K., Sekiguchi,H., Matsuda,Y., Sugimoto,K., Ono,K. and Yano,M.	Molecular identification of a major quantitative trait locus, qLTG3-1, controlling low temperature germinability in rice	Proc. Natl. Acad. Sci. U.S.A.	105(34)	12623-12628	2008	HYPRP5	qLTG-3-1(t), qLTG3-1, OsHyPRP05, OsHyPRP5, HyP/GRP05, HyP/GRP5
30597	0	Fukuda,T., Osaki,M., Shinano,T. and Wasaki,J.	Cloning and characterization of two secreted acid phosphatases from rice calli	In Horst,W.J., Schenk,M.K. and etc. (Eds.); PLANT NUTRITION - FOOD SECURITY AND SUSTAINABILITY OF AGRO-SYSMS THROUGH BASIC AND APPLIED RESEARCH  Kluwer Academic Publishers, The Netherlands		34-35	2001		
30598	0	Furukawa,T., Kimura,S., Ishibashi,T., Hashimoto,J. and Sakaguchi,K.	A plant homologue of 36 kDa subunit of replication factor C: molecular cloning and characterization	Plant Sci.	161(1)	99-106	2001	RFC3	OsRFC3
30599	0	Gao,Z., Zeng,D., Cui,X., Zhou,Y., Yan,M., Huang,D., Li,J. and Qian,Q.	Map-based cloning of the ALK gene, which controls the gelatinization temperature of rice	Sci. China, C, Life Sciences	46	661-668	2003	ALK	alk, SSII-3, OsSSIIa, OsSSII-3, SSIIa, SSS2A, OsSSIIaChr6, SS2a
30600	18365248	Ge,L.F., Chao,D.Y., Shi,M., Zhu,M.Z., Gao,J.P. and Lin,H.X.	Overexpression of the trehalose-6-phosphate phosphatase gene OsTPP1 confers stress tolerance in rice and results in the activation of stress responsive genes	Planta.	228(1)	191-201	2008	TPP1	OsTPP1, OsTPS, TPP
30601	21665625	Ge,S., Li,A., Lu,B.-R., Zhang,S.-Z. and Hong,D.-Y.	A phylogeny of the rice tribe Oryzeae (Poaceae) based on matK sequence data	Am. J. Bot.	89(12)	1967-1972	2002	_	matK, ORF542 
30603	18395997	Gu,Z., Ma,B., Jiang,Y., Chen,Z., Su,X. and Zhang,H.	Expression analysis of the calcineurin B-like gene family in rice (Oryza sativa L.) under environmental stresses	Gene	415(1-2)	1-12	2008	CBL6,CBL5,CBL3,CBL8,SOS3,CBL7,CBL2,CBL10,CBL1,CBL9	OsCBL6,OsCBL5,OsCBL3,OsCBL8,CBL4, OsCBL4, OsSOS3,OsCBL7,OsCBL2,OsCBL10,OsCBL1, Os-CBL1,OsCBL9
30604	0	Hayakawa,T., Sakai,T., Ishiyama,K., Hirose,N., Nakajima,H., Takezawa,M., Naito,K., Hino-Nakayama,M., Akagawa,T., Goto,S. and Yamaya,T.	Organization and structure of ferredoxin-dependent glutamate synthase gene and intracellular localization of the enzyme protein in rice plants	Plant Biotechnol.	20(1)	43-55	2003	GLT1,ABC1	OsGLT1, OsNADH-GOGAT1, NADH-GOGAT1, OsNADH-GOGAT, GOGAT, NADH-GOGAT, OsGOGAT1, GOGAT1, OsGLU1,OsABC1, SPL32, OsSPL32, OsGLU, OsFd-GOGAT, Fd-GOGAT, ABC1/ OsFd-GOGAT 
30605		Hirabayashi,S., Matsushita,Y., Sato,M., Oh-i,R., Kasahara,M., Abe,H. and Nyunoya,H.	Two Proton Pump Interactors Identified from a Direct Phosphorylation Screening of a Rice cDNA Library by Using a Recombinant BRI1 Receptor Kinase	Plant Biotechnol.	21(1)	35-45	2004	D61,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,BZIP59,BIP122,BIP120,BIP133,BIP127,_,C3H13 ,_,BIP123,_,YSS2,_	d61*, dwf42, d61, OsBRI1, OSBRI1, BRI1, Os BRI1, Osbri1, OsBRKq1, BRKq1,BIP115, OsRH18,BIP124,BIP112,BIP107,BIP135,BIP109,BIP117,BIP119,BIP121,BIP128,BIP103,BIP130,BIP116,BIP111,BIP126,BIP113,BIP104,BIP102,BIP101,BIP106,BIP108,BIP131,BIP129,OsbZIP59, BIP125,OsFKBP58, FKBP58, OsFKBP53a, FKBP53a, OsBIP122,OsBIP120, qCTS-9, TAF2, OsTAF2,OsBIP133, OsMYB87, MYB87 ,OsBIP127, TRBF2, OsTRBF2, Os2R_MYB99, 2R_MYB99,OsBIP110, BIP110, OsUBP7-4, UBP7-4, OsUBP28, UBP28,OsC3H13, BIP105, DLN42, DLN42a, DLN42b, OsDLN42, OsDLN42a, OsDLN42b,BIP134, OsBIP134,OsBIP123, RPL24a, OsRPL24a, RPL24B, OsRPL24B,BIP132,OsNDPK2, NDPK2, BIP114,BIP118
30606	12764611	Hirouchi,T., Nakajima,S., Najrana,T., Tanaka,M., Matsunaga,T., Hidema,J., Teranishi,M., Fujino,T., Kumagai,T. and Yamamoto,K.	A gene for a Class II DNA photolyase from Oryza sativa: cloning of the cDNA by dilution-amplification	Mol. Genet. Genomics	269(4)	508-516	2003	CPD	qUVR-10, OsPHR, PHR, OsCPD
30607	0	Hou,F.-Y., Huang,J., Yu,S.-L. and Zhang,H.-S.	The 6-phosphogluconate Dehydrogenase Genes Are Responsive to Abiotic Stresses in Rice	J. Integr. Plant Biol.	49(5)	655-663	2007	_,_,6PGDH2,6PGDH1	OsG6PDH3, OsG6PDH2,OsG6PDH2, OsG6PDH1, OsG6PDH,Os6PGDH2,Os6PGDH1, Os6PGDH, 6PGDH
30608	8589847	Howland,D.E. and Hewitt,G.M.	Phylogeny of the Coleoptera based on mitochondrial cytochrome oxidase I sequence data	Insect Mol. Biol.	4(3)	203-215	1995		
30609	8552712	Hsing,Y.-I.C., Tsao,C.W., Hsieh,J.-S., Chen,Z.-Y., Shu,T.-F. and Chow,T.-Y.	A Rice Early Embryogenesis-specific Enolase cDNA (Accession No. U09450) (PGR95-084)	Plant Physiol.	109(3)	1125	1995	_	OsEE1, OsENO1, ENO1, OsEno7, Eno7, OsEno4, Eno4
30610	18622033	Huang,C.L., Hwang,S.Y., Chiang,Y.C. and Lin,T.P.	Molecular Evolution of Pi-ta Gene Resistance to Rice Blast in Wild Rice (Oryza rufipogon)	Genetics	179(3)	1527-1538	2008	PITA	Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30, Trx30
30611	0	Huang,H.J.		Thesis  Department of Biology, National Cheng-Kung University, Tainan, Taiwan			2001		
30612	0	Huang,J., Wang,M., Jiang,Y., Wang,Q., Huang,X. and Zhang,H.	Stress repressive expression of rice SRZ1 and characterization of plant SRZ gene family	Plant Sci.	174(2)	227-235	2008	_,LS1,LMGC1,STL1	OsZFP1, SRZ3,OsSRZ1, SRZ1, OsLS1,SRZ3, OsSRZ3, OsLMGC1, RZF1, OsRZF1,SRZ4, OsSRZ4, OsSTL1
30613	18588956	Huang,J., Wang,M.M., Jiang,Y., Bao,Y.M., Huang,X., Sun,H., Xu,D.Q., Lan,H.X. and Zhang,H.S.	Expression analysis of rice A20/AN1-type zinc finger genes and characterization of ZFP177 that contributes to temperature stress tolerance	Gene	420(2)	135-144	2008	ZFP157,ZFP173,ZFP176,ZFP181,ZFP177	,,,,OsSAP9, SAP9, ZFP33
30614	17434609	Huang,J., Yang,X., Wang,M.M., Tang,H.J., Ding,L.Y., Shen,Y. and Zhang,H.S.	A novel rice C2H2-type zinc finger protein lacking DLN-box/EAR-motif plays a role in salt tolerance	Biochim. Biophys. Acta	1769(4)	220-227	2007	ZFP182,ZFP182	OsZFP182,  ZOS3-21, OsZOS3-21, ZOS3, OsZOS3,ZFP182/ZOS3-21, ZOS3-21
30615	18054244	Huang,Y.W., Tsay,W.S., Chen,C.C., Lin,C.W. and Huang,H.J.	Increased expression of the rice C-type cyclin-dependent protein kinase gene, Orysa;CDKC;1, in response to salt stress	Plant Physiol. Biochem.	46(1)	71-81	2008	CDKC;2,CDC2-1,CDKC;1,CDKB2;1 	CDKC;2, Orysa;CDKC;2, Orysa;CDKC;1, CDKC;1, OsCDKC1, OsCDKC;1,cdc2Os-1, CDC2Os-1, CDKA-1, CDKA;1, Orysa;CDKA;1, OsCDKA;1, cdc2Os1, Rcdc2-1, OsCDKA1, CDKA1, CDC20S-1, OsCDC20S-1 ,CDKC;1, Orysa;CDKC;1, Orysa;CDKC;2, CDKC;2, OsCDKC;2, OsCDKC2,Orysa;CDKB2;1, OsCDKB2;1, cdc2Os3, Oscdc20s-3, cdc20s-3, Orysa;CDKB;2, CYCB2.1, CDKB-2, OsCDKB-2
30616	17415667	Hur,Y.J., Lee,H.G., Jeon,E.J., Lee,Y.Y., Nam,M.H., Yi,G., Eun,M.Y., Nam,J., Lee,J.H. and Kim,D.H.	A phosphate starvation-induced acid phosphatase from Oryza sativa: phosphate regulation and transgenic expression	Biotechnol. Lett.	29(5)	829-835	2007	_	OsACP1, ACP1
30617	17666027	Ikeda,K., Ito,M., Nagasawa,N., Kyozuka,J. and Nagato,Y.	Rice ABERRANT PANICLE ORGANIZATION 1, encoding an F-box protein, regulates meristem fate	Plant J.	51(6)	1030-1040	2007	APO1	apo1(t), apo1, SCM2, SCM2/APO1, OsFbox321, Os_F0393, Pbl6/APO1, Pbl6, OsPbl6,  OsFBX202, FBX202
30618	0	Ito,H., Kimizuka,F., Ohbayashi,A., Matsui,H., Honma,M., Shinmyo,A., Ohashi,Y., Rodriguez,R.L. and Caplan,A.B.	Molecular cloning and characterization of two complementary DNAs encoding putative peroxidases from rice (Oryza sativa L.) shoots	Plant Cell Rep.	13(7)	361-366	1994	POXA,POXN	poxA, prx126, OsPrx126, prxRPA, RPA,poxN, prx38, prxRPN, RPN, poxN/PRX38, Osprx38, OsPOXN
30619	17531407	Josefsen,L., Bohn,L., Sorensen,M.B. and Rasmussen,S.K.	Characterization of a multifunctional inositol phosphate kinase from rice and barley belonging to the ATP-grasp superfamily	Gene	397(1-2)	114-25	2007	IPK	OsIpk
30620	0	Jwa,N.-S., Park,S.-G., Park,C.-H., Kim,S.-O., Ahn,I.-P., Park,S.-Y., Yoon,C.-H. and Lee,Y.-H.	Cloning and expression of a rice cDNA encoding a Lls1 homolog of maize	Plant Pathol. J.	16(3)	151-155	2000	YGL10,BLM	CAO, OsCAO, CAO1, OsCAO1, Oslls1, Lls1, DVR, PGL,blm (=bl2)
30621	2139209	Kaleikau,E.K., Andre,C.P. and Walbot,V.	Sequence of the F0-atpase proteolipid (atp9) gene from rice mitochondria	Nucleic Acids Res.	18(2)	370	1990	_	atp9, RMtATP9, aatp9
30622	2158075	Kaleikau,E.K., Andre,C.P. and Walbot,V.	Sequence of the rice mitochondrial gene for cytochrome oxidase subunit 3	Nucleic Acids Res.	18(2)	371	1990	_	cox3, coxIII, cox3a, cox3b, cox3c
30623	1282087	Kaleikau,E.K., Andre,C.P. and Walbot,V.	Structure and expression of the rice mitochondrial apocytochrome b gene (cob-1) and pseudogene (cob-2)	Curr. Genet.	22(6)	463-470	1992	_,_	cob-2,cob, cob-1, cob-like, cyt c
30624	17376611	Kang,S.G., Jeong,H.K., Lee,E. and Natarajan,S.	Characterization of a lipoate-protein ligase A gene of rice (Oryza sativa L.)	Gene	393(1-2)	53-61	2007	_	OsLPLA
30625	18205020	Kanneganti,V. and Gupta,A.K.	Overexpression of OsiSAP8, a member of stress associated protein (SAP) gene family of rice confers tolerance to salt, drought and cold stress in transgenic tobacco and rice	Plant Mol. Biol.	66(5)	445-462	2008	SAP8	Osi-SAP8, OsiSAP8, OsSAP8, OsSAP1, SAP1
30626	1588598	Karlovsky,P. and Fartmann,B.	Genetic code and phylogenetic origin of oomycetous mitochondria	J. Mol. Evol.	34(3)	254-258	1992	_	cox3, coxIII, cox3a, cox3b, cox3c
30627	8675024	Katayama,M., Sakai,Y., Okamoto,S., Ihara,F., Nihira,T. and Yamada,Y.	Gene organization in the ada-rplL region of Streptomyces virginiae	Gene	171(1)	135-136	1996		
30628	0	Kathiresan,A., Khush,G.S. and Bennett,J.	Two rice DMC1 genes are differentially expressed during meiosis and during haploid and diploid mitosis	Sex. Plant Reprod.	14	257-267	2002	DMC1B,DMC1A	OsDMC1B, OsDmc1B, Dmc1B, RiLIM15B ,OsDMC1A, OsDmc1A, Dmc1A, DMC1, OsDMC1, RiLIM15A, OsRad51
30629	0	Kato,A., Shimazaki,T., Nishi,R. and Uchimiya,H.	Isolation and characterization of a rice cDNA homologous to the Xenopus maternal G10 protein gene	Thesis  Nagoya City University Medical School			1992		
30630	0	Kim,Y.-K., Cha,Y.-K., Jun,H.-Y., Kim,J.-D., Choi,J.-S., Kim,H.-R. and Han,I.-S.	Nucleotide Sequence of a cDNA (OstubG2) (Accession No. AF036957) Encoding a gamma-Tubulin in the Rice Plant (PGR99-186)	Plant Physiol.	121(4)	1383	1999		
30631	17991631	Kinoshita,A., Nakamura,Y., Sasaki,E., Kyozuka,J., Fukuda,H. and Sawa,S.	Gain-of-Function Phenotypes of Chemically Synthetic CLAVATA3/ESR-Related (CLE) Peptides in Arabidopsis thaliana and Oryza sativa	Plant Cell Physiol.	48(12)	1821-1825	2007	_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,CLE402	OsCLE501, CLE501,OsCLE502, CLE502,OsCLE506, CLE506,OsCLE504, CLE504,OsCLE505, CLE505,OsCLE206, CLE206,OsCLE508, CLE508,OsCLE104, CLE104,OsCLE503, CLE503,OsCLE101, CLE101,OsCLE301, CLE301,FOS1, OsCLE202, CLE202,OsCLE403, CLE403,OsCLE204, CLE204,OsCLE303, CLE303,OsCLE302, CLE302,OsCLE603, CLE603,OsCLE103, CLE103,OsCLE404, CLE404,OsCLE201, CLE201,OsCLE205, CLE205,OsCLE102, CLE102,OsCLE507, CLE507,OsCLE306, CLE306,OsCLE305, CLE305,OsCLE304, CLE304,OsCLE801, CLE801,OsCLE401, CLE401,OsCLE203, CLE203,OsCLE601, CLE601,OsCLE602, CLE602,OsCLE509, CLE509,OsCLE701, CLE701,FCP1,OsFCP1,  FCP1/Os CLE402, Os CLE402, OsCLE402
30632	0	Kitaura,K., Nakazaki,T., Yoshimichi,F. and Ikehashi,H.	Polymorphism and linked markers of S-type thioredoxin-like genes in rice(Oriza sativa L.)	Breeding Science	48(Suppl. 2)	113	1998	STRN1	S-trn1(t)*, Strn-l(t)*, Strn, S-trn-l
30633	8806415	Kubo,N., Ozawa,K., Hino,T. and Kadowaki,K.	A ribosomal protein L2 gene is transcribed, spliced, and edited at one site in rice mitochondria	Plant Mol. Biol.	31(4)	853-862	1996	RPL2,RPS19	rpl2,rps19
30634	0	Kumamaru,T., Uemura,U., Takemoto,Y., Ogawa,M. and Satoh,H.	High-resolution mapping of glup3 gene accumulating high amount of glutelin precursor	RGN	19	62-63	2002	GLUP3	glup3(esp7), esp7, glup3, OsVPE1, VPE1, OsaLeg3
30635	17416733	Kusaba,M., Ito,H., Morita,R., Iida,S., Sato,Y., Fujimoto,M., Kawasaki,S., Tanaka,R., Hirochika,H., Nishimura,M. and Tanaka,A.	Rice NON-YELLOW COLORING1 is involved in light-harvesting complex II and grana degradation during leaf senescence	Plant Cell	19(4)	1362-1375	2007	NOL,NYC1,PLS4	nol, NOL1, OsNOL, OsNOL1,nyc1, OsNYC1,OsPLS4
30636	17852346	Lee,D.H. and Kang,S.G.	Characterization of phosphatidylinositol-glycan biosynthesis protein class F gene in rice	DNA Seq.	19(3)	282-290	2008	_	PIGF, PIG-F, OsPIG-F
30637	16792693	Lee,J.R., Jang,H.H., Park,J.H., Jung,J.H., Lee,S.S., Park,S.K., Chi,Y.H., Moon,J.C., Lee,Y.M., Kim,S.Y., Kim,J.Y., Yun,D.J., Cho,M.J., Lee,K.O. and Lee,S.Y.	Cloning of two splice variants of the rice PTS1 receptor, OsPex5pL and OsPex5pS, and their functional characterization using pex5-deficient yeast and Arabidopsis	Plant J.	47(3)	457-466	2006	PEX5,PEX7,PEX14	OsPEX5, OsPex5pL, OsPex5pS, OsPex5L, OsPex5S, OsPex5p,OsPex7, OsPex7p,OsPex14, OsPex14p, OsPEX14
30638	18162592	Li,F., Vallabhaneni,R. and Wurtzel,E.T.	PSY3, a New Member of the Phytoene Synthase Gene Family Conserved in the Poaceae and Regulator of Abiotic Stress-Induced Root Carotenogenesis	Plant Physiol.	146(3)	1333-1345	2008	PSY1,PSY3,PSY2	OsPSY1 ,OsPSY, PSY, OsPSY3,OsPSY2
30639	0	Li,G., Zhan,S. and Cao,K.	Rice Lipid Transfer Protein Gene	Thesis  Biochemistry, Fudan University			1995		
30640	0	Li,J.C., Guo,J.B., Xu,W.Z. and Ma,M.	RNA Interference-mediated Silencing of Phytochelatin Synthase Gene Reduce Cadmium Accumulation in Rice Seeds	J. Integr. Plant Biol.	49(7)	1032-1037	2007	PCS1	OsPCS1, OsPCS2, PCS2, OsPCS15, PCS15
30641	17947408	Lin,F., Chen,S., Que,Z., Wang,L., Liu,X. and Pan,Q.	The Blast Resistance Gene Pi37 Encodes a Nucleotide Binding Site-Leucine-Rich Repeat Protein and Is a Member of a Resistance Gene Cluster on Rice Chromosome 1	Genetics	177(3)	1871-1880	2007	PIZT,PI36,PI9,PI37,PIB,PIZ	Piz-t, Pi-zt, Pi-z(t), Pi2/Pizt, Pizt, Pi9, OsPiz-t,Pi36(t), Pi36,Pi9(t), Pi9(t)*, Pi9, Pi-9(t),Pi37(t), Pi37,Pi b(Pi s), Pis, Pib, Pi-s, Pi-hy,Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2
30642	0	Lin,R., Zhao,W., Meng,X. and Peng,Y.L.	Molecular cloning and characterization of a rice gene encoding AP2/EREBP-type transcription factor and its expression in response to infection with blast fungus and abiotic stresses	Physiol. Mol. Plant Pathol.	70(1-3)	60-68	2007	ERF72	OsEREBP, OsERF#072, OsERF072, OsERF72, AP2/EREBP#064, AP2/EREBP64, BIERF1, OsBIERF1, OsEBP2
30644	1617739	Liu,A.W., Narayanan,K.K., Andre,C.P., Kaleikau,E.K. and Walbot,V.	Co-transcription of orf25 and coxIII in rice mitochondria	Curr. Genet.	21(6)	507-513	1992	_,_	cox3, coxIII, cox3a, cox3b, cox3c,orf25, atp4
30645	17905898	Liu,B., Chen,Z., Song,X., Liu,C., Cui,X., Zhao,X., Fang,J., Xu,W., Zhang,H., Wang,X., Chu,C., Deng,X., Xue,Y. and Cao,X.	Oryza sativa Dicer-like4 Reveals a Key Role for Small Interfering RNA Silencing in Plant Development	Plant Cell	19(9)	2705-2718	2007	SHO1,TAS3	sho1, DCL4, OsDCL4, Os DCL4, Dcl4 ,TAS3
30646	18037265	Liu,F., Xu,W., Tan,L., Xue,Y., Sun,C. and Su,Z.	Case study for identification of potentially indel-caused alternative expression isoforms in the rice subspecies japonica and indica by integrative genome analysis	Genomics	91(2)	186-194	2008	_	prx90
30648	16919842	Liu,X., Bai,X., Wang,X. and Chu,C.	OsWRKY71, a rice transcription factor, is involved in rice defense response	J. Plant Physiol.	164(8)	969-979	2007	PR1B,WRKY71	OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1, OsPR1a, PR1a,OsWRKY71, WRKY-71
30649	17507669	Liu,X., Lin,F., Wang,L. and Pan,Q.	The in silico map-based cloning of pi36, a rice coiled-coil nucleotide-binding site leucine-rich repeat gene that confers race-specific resistance to the blast fungus	Genetics	176(4)	2541-2549	2007	PI36	Pi36(t), Pi36
30650	17999149	Li,X., Tan,L., Huang,H., Zhu,Z., Li,C., Hu,S. and Sun,C.	Construction of a bacterial artificial chromosome (BAC) library of common wild rice (Oryza rufipogon Griff.) for map-based cloning of genes selected during the domestication of rice	Biotechnol. Lett.	30(3)	555-561	2008	SH4,_,_,_	sh4, SH4, SHAT2, SHA1, qSH4, QSH4, OsSh4, Sh4, Osh4, OsMSL23, MSL23,Rf,LGH1,SP
30651	16766658	Londo,J.P., Chiang,Y.C., Hung,K.H., Chiang,T.Y. and Schaal,B.A.	Phylogeography of Asian wild rice, Oryza rufipogon, reveals multiple independent domestications of cultivated rice, Oryza sativa	Proc. Natl. Acad. Sci. U.S.A.	103(25)	9578-9583	2006	SAMS1,_,_	OsSAMS1, OS-SAMS1, OsSAMS, SAM, SAMS,,Vatp, OsSTA154
30652	17625566	Ma,J.F., Yamaji,N., Mitani,N., Tamai,K., Konishi,S., Fujiwara,T., Katsuhara,M. and Yano,M.	An efflux transporter of silicon in rice	Nature	448(7150)	209-212	2007	LSI2,LSI1	Lsi2, SIET1, OsLsi2, OsSIET1,lsi1, NIP2-1, OsNIP2;1, NIP2;1, OsLsi1, lsi(t), OsNIP2.1/OsLsi1/OsSIIT1, OsNIP2.1, NIP2.1
30654	15653800	Mashiguchi,K., Yamaguchi,I. and Suzuki,Y.	Isolation and identification of glycosylphosphatidylinositol-anchored arabinogalactan proteins and novel beta-glucosyl Yariv-reactive proteins from seeds of rice (Oryza sativa)	Plant Cell Physiol.	45(12)	1817-1829	2004	_,_,AGP14,AGP19,AGP1,ENODL1	OsAGPEP3,OsLLA1, OsLTPG6, OsLTPg6, OsLTPL1, LLA1, LTPG6, LTPg6, LTPL1,OsAGP14, OsAGPEP2,OsAGP19, OsAGPEP1,OsAGP1,OsENODL1, OsELA1, ELA1
30655	17947413	Mather,K.A., Caicedo,A.L., Polato,N.R., Olsen,K.M., McCouch,S. and Purugganan,M.D.	The Extent of Linkage Disequilibrium in Rice (Oryza sativa L.)	Genetics	177(4)	2223-2232	2007	WRKY21	OsWRKY21
30657	0	Meng,X.-B., Zhao,W.-S., Lin,R.-M., Wang,M. and Peng,Y.-L.	Identification of a novel rice bZIP-type transcription factor gene, OsbZIP1 involved in response to infection of Magnaporthe grisea	Plant Mol. Biol.	23(3)	301a-301m	2005	BZIP28	OsbZIP28, OsbZIP1, OsNIF1, OsTGA3, TGA3, OsTGA3/OsbZIP08
30658	18305920	Mikami,I., Uwatoko,N., Ikeda,Y., Yamaguchi,J., Hirano,H.Y., Suzuki,Y. and Sano,Y.	Allelic diversification at the wx locus in landraces of Asian rice	Theor. Appl. Genet.	116(7)	979-989	2008	WX1	wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx
30659	8790446	Miyata,S., Kanazawa,A., Tsutsumi,N., Sano,Y. and Hirai,A.	Mitochondrial plasmid-like DNAs of the B1 family in the genus Oryza: sequence heterogeneity and evolution	Jpn. J. Genet.	70(6)	675-685	1995	_,_,_	M1,M2,M3
30660	3240862	Moon,E. and Wu,R.	Organization and nucleotide sequence of genes at both junctions between the two inverted repeats and the large single-copy region in the rice chloroplast genome	Gene	70(1)	1-12	1988	RPL23,_,RPS19,RPL2,_,_,RPL22,RPL23,_,RPL2,PSBA,_	rpl23,trnI(CAU), trnI, trnI-CAU,rps19,rpl2,trnH(GUG), trnH, trnH-GUG,trnI(CAU), trnI, trnI-CAU,rpl22,rpl23,trnH(GUG), trnH, trnH-GUG,rpl2,PsbA, psbA, OsPsbA, PSBD1, OsPSBD1, psbD1,rps19
30661	3029686	Moon,E., Kao,T.H. and Wu,R.	Rice chloroplast DNA molecules are heterogeneous as revealed by DNA sequences of a cluster of genes	Nucleic Acids Res.	15(2)	611-630	1987	RBCL	rbcL, rbcA, OsrbcL
30662	2954029	Moon,E., Kao,T.H. and Wu,R.	Sequence of the chloroplast-encoded atpB-atpE-trnM gene clusters from rice	Nucleic Acids Res.	15(10)	4358-4359	1987	_,_,_,_,_,_	atpE,atpE.p,atpB.p,atpB.p,atpE.p,atpB, AtpB, atpcf1, ATPbeta
30663	0	Moon,E.P., Lee,K.W., Lee,J.S., Choi,Y.D. and Kim,H.J.	Isolation and Characterization of cDNAs for Ribulose Bisphosphate Carboxylase Multigene Family in Rice (Oryza)	Mol. Cells	1	287-294	1991	RBCS	rbcS, OsRbcS, RBCS-C, RbcS2, OsRBCS2, RbcS1, OsRbcS2, OsrbcS1
30664	17675406	Nakagawa,Y., Hanaoka,H., Kobayashi,M., Miyoshi,K., Miwa,K. and Fujiwara,T.	Cell-Type Specificity of the Expression of Os BOR1, a Rice Efflux Boron Transporter Gene, Is Regulated in Response to Boron Availability for Efficient Boron Uptake and Xylem Loading	Plant Cell	19(8)	2624-2635	2007	BOR4,BOR2,BOR1,BOR3	OsBOR4,OsBOR2,OsBOR1,OsBOR3
30665	0	Nakazaki,T., Misawa,T., Horibata,A., Yamahira,S., Okumoto,Y., Yamagata,H. and Tanisaka,T.	Insertion-polymorphism of transposable-element-like fragment within the region spanning the mutable slender-glume gene slg	Breeding Research	3	116	2001	SRT,SLG	Srt,slg, Rurm1, Urm1, OsSUMO7, SUMO7
30666	0	Nakazaki,T., Tomimoto,Y., Ikehashi,H., Kowyama,Y., Yano,M., Yamamoto,K. and Sasaki,T.	A novel chitinase in rice (Oryza sativa L.) detected from husk proteins and its gene locus	Breeding Science	47(4)	363-369	1997	CHT4	Cht4(t)*(Chi4), Chi4, Cht4, OsChia2b, Chi-4, CHIT2, OsCHIT2, PR3, OsPR3
30667	8437578	Nakazono,M. and Hirai,A.	Identification of the entire set of transferred chloroplast DNA sequences in the mitochondrial genome of rice	Mol. Gen. Genet.	236(2-3)	341-346	1993	RPOB,RPOC1,RPOC2,RBCL,NDHK,_,_,_,_,_,RPL23,_,RPL14,RPS4,_,_,NDHG,_,_,_,RPS19,_,_,NDHJ,_,_,_,CLPP.P,_,_,RPL2,RPL23.P,RPS19.P,_,_,RPOB,_,_,_,_,_,RPL14.P,NDHE,NDHG,RPS4,RPOC2.P,_,_,PETB,_,_,RPOC1,_,_,CLPP,NDHE,RPL2,_,_,_,_,RPOB.P,_,_,_,_,_	rpoB, RpoB, Rpobeta,rpoC1,rpoC2, RPO beta", RPObeta",rbcL, rbcA, OsrbcL,ndhK,trnM,atpE,atpH,trnR(TCT), trnR,trnI(CAU), trnI, trnI-CAU,rpl23,ORF85,rpl14,rps4 ,trnV, trnV(UAC), trnV-UAC,trnR(UCU), trnR, trnR-UCU,ndhG,trnS(GGA), trnS, trnS-GGA,trnV, trnV(GAC), trnV-GAC,trnN(GUU), trnN, trnN-GUU,rps19,trnI, pseudo-trnI,trnH(GUG), trnH, trnH-GUG,ORF159, ndhJ,trnP(UGG), trnP, trnP-UGG,trnC, trnC(GCA), trnC-GCA,trnM, trnM(CAU), trnM-CAU,ClpP, ClpP.p,trnW(CCA), trnW, trnW-CCA,ORF85,rpl2,rpl23.p,rps19, rps19.p,atpB,rbcL,rpoB,trnL,atpH, atpH.p,atpA, atpA.p,petB, petB.p,trnV(GAC), trnV,rpl14, rpl14.p,ndhE,ndhG,rps4,rpoC2.p, rpoC2,ORF159,trnF(GAA), trnF, trnF-GAA,petB, OsPETB,trnL(UAA), trnL, trnL-UAA,atpA,rpoC1, RPO beta', RPObeta', OsRPOC1,atpE,atpB, AtpB, atpcf1, ATPbeta,ORF216, ClpP, clpP,ndhE,rpl2,trnH(GTG), trnH,trnW(CCA), trnW,trnP(TGG), trnP,ndhK,rpoB.p,trnN(GTT), trnN,trnV.p, pseudo-trnV, trnV,trnC(GCA), trnC,trnS(GGA), trnS,trnF(GAA), trnF
30668	8625419	Nakazono,M., Ishikawa,M., Yoshida,K.T., Tsutsumi,N. and Hirai,A.	Multiple initiation sites for transcription of a gene for subunit 1 of F1-ATPase (atp1) in rice mitochondria	Curr. Genet.	29(5)	417-422	1996	ATP	ATP*(atp1), ATPX, atp1
30669	8625418	Nakazono,M., Ito,Y., Tsutsumi,N. and Hirai,A.	The gene for a subunit of an ABC-type heme transporter is transcribed together with the gene for subunit 6 of NADH dehydrogenase in rice mitochondria	Curr. Genet.	29(5)	412-416	1996	NAD6,_,CCMC	nad6,trnI, pseudo-trnI,ccmC, orf240
30670	7509206	Nakazono,M., Kanno,A., Tsutsumi,N. and Hirai,A.	Palindromic repeated sequences (PRSs) in the mitochondrial genome of rice: evidence for their insertion after divergence of the genus Oryza from the other Gramineae	Plant Mol. Biol.	24(2)	273-281	1994	RPS3,_	rps3,trnN(GTT), trnN
30671	0	Nakazono,M., Tsutsumi,N. and Hirai,A.	The CRTA motif is present in the promoters of mitochondrial genes of rice	Plant Sci.	105	227-234	1995	_,RPS12,RPL16,RPS2,NAD3,26S  rRNA,RPS3,18S  rRNA,_	trnfM(CAT), trnfM,rps12,rpl16, pseudo-rpl16,rps2, orf483 ,nad3,rrn26,rps3,rrn18,atp9, RMtATP9, aatp9
30672	7599319	Nakazono,M., Tsutsumi,N., Sugiura,M. and Hirai,A.	A small repeated sequence contains the transcription initiation sites for both trnfM and rrn26 in rice mitochondria	Plant Mol. Biol.	28(2)	343-346	1995	_,26S  rRNA	trnfM(CAT), trnfM,rrn26
30673	16987950	Nardmann,J. and Werr,W.	The shoot stem cell niche in angiosperms: expression patterns of WUS orthologues in rice and maize imply major modifications in the course of mono- and dicot evolution	Mol. Biol. Evol.	23(12)	2492-2504	2006	QHB,FON1,WOX5,WOX4,WOX9,WOX10,TAB1,WOX8,NAL2,WOX9C	OsQHB, OsWOX9, WOX9, WOX5, Os WOX5, OsWOX5, QHB/OsWOX9,OsFON1, fon1, OsRLCK219, RLCK219,OsWOX2, Os WOX2, WOX2, OsWOX5, OsWOX2L, WOX2L,OsWOX4, Os WOX4,OsWOX9, DWL1,OsWOX10, Os WOX10, OsWOX11/12, OsWOX11,Os WUS, WUS, OsWOX1, WOX1, OsWUS, OsTAB, TAB1/WUS, MOC3, MOC3/OsWUS, SRT1, MOC3/TAB1/SRT1, DC1, OsDC1, DAP1, OsDAP1,OsWOX8, Os WOX8, OsWOX13, WOX13, OsWOX9B,nal2, nal3, cul2, OsWOX3A, WOX3A, Os NS, NS, OsNS, OsWOX3, OsNS1/OsNS2, OsPRS,OsWOX9C, DWL2, OsDWL2, DWL2/WOX9C
30674	17768306	Nardmann,J., Zimmermann,R., Durantini,D., Kranz,E. and Werr,W.	WOX Gene Phylogeny in Poaceae: A Comparative Approach Addressing Leaf and Embryo Development	Mol. Biol. Evol.	24(11)	2474-2484	2007	WOX4,WOX10,WOX9,WOX8,GL1,QHB,WOX5,NAL2,WOX9C	OsWOX4, Os WOX4,OsWOX10, Os WOX10, OsWOX11/12, OsWOX11,OsWOX9, DWL1,OsWOX8, Os WOX8, OsWOX13, WOX13, OsWOX9B,gl1, NUDA/GL-1, NUDA/GL1, NUDA, GL-1, OsWOX3B, OsWOX2, OsWOX3, Os WOX3, WOX3B, WOX2, WOX3, LSY1, OsLSY1, DEP, OsDEP,OsQHB, OsWOX9, WOX9, WOX5, Os WOX5, OsWOX5, QHB/OsWOX9,OsWOX2, Os WOX2, WOX2, OsWOX5, OsWOX2L, WOX2L,nal2, nal3, cul2, OsWOX3A, WOX3A, Os NS, NS, OsNS, OsWOX3, OsNS1/OsNS2, OsPRS,OsWOX9C, DWL2, OsDWL2, DWL2/WOX9C
30675	0	Nishizawa,Y. and Hirai,A.	Nucleotide sequence and expression of the gene for the large subunit of rice ribulose 1, 5-bisphosphate carboxylase	Jpn. J. Genet.	62	389-395	1987	RBCL	rbcL, rbcA, OsrbcL
30676	2534354	Nishizawa,Y. and Hirai,A.	The nucleotide sequences and expression of genes for the beta and epsilon subunits of ATP synthase from rice (Oryza sativa L.)	Jpn. J. Genet.	64(3)	223-229	1989	_,_	atpB, AtpB, atpcf1, ATPbeta,atpE
30677	18193402	Nonoue,Y., Fujino,K., Hirayama,Y., Yamanouchi,U., Lin,S.Y. and Yano,M.	Detection of quantitative trait loci controlling extremely early heading in rice	Theor. Appl. Genet.	116(5)	715-722	2008	HD5,HD4,SE1	Hd5(t)*, Hd5, qHD5, HAP3H, OsHAP3H, NF-YB, CBF-A, DTH8 , qHD5(t)*, Ghd8, Ghd8/DTH8, Lhd1, NF-YB11, OsNF-YB11, NFYB11, LH8, DTH8/Ghd8, RH8, DTH8/Ghd8/LHD1, CAR8, DTH8/Ghd8/ OsHAP3H, EF8, OsEF8,Hd4(t), qHD4(t), qHD4,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, OsHd1,  Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21
30678	0	Nugroho,S. and Jefferson,R.A.	The identification of rice O. sativa GSK-3 related protein kinase gene family using the yeast S. cerevisiae meiotic regulatory gene RIMM11 as probe	Ann Bogor	7	39-55	2001		
30679	18308732	Ogo,Y., Kobayashi,T., Nakanishi Itai,R., Nakanishi,H., Kakei,Y., Takahashi,M., Toki,S., Mori,S. and Nishizawa,N.K.	A Novel NAC Transcription Factor, IDEF2, That Recognizes the Iron Deficiency-responsive Element 2 Regulates the Genes Involved in Iron Homeostasis in Plants	J. Biol. Chem.	283(19)	13407-13417	2008	NAC36	ONAC036, ONAC36, ONAC038, ONAC38, IDEF2, OsIDEF2
30680	17634747	Okada,A., Shimizu,T., Okada,K., Kuzuyama,T., Koga,J., Shibuya,N., Nojiri,H. and Yamane,H.	Elicitor induced activation of the methylerythritol phosphate pathway toward phytoalexins biosynthesis in rice	Plant Mol. Biol.	65(1-2)	177-187	2007	CPS4,CPS2,HDS,LAS1,DXS1,DXS3,KS7,GRY340,MCS,CMS,DXR,DXS2	OsCPS4, CYC1, OsCYC1, OsCyc1, cpsl3, OsCPSL3, OsCPSsyn, OsCyc1/OsCPS4, OsTPS15, Os-CPS4, TPS11, OsTPS11,OsCPS2, cps2, OsCPS2ent, CYC2, OsCyc2, OsCYC2, OsCPSL1, cpsl1, OsCyc2/OsCPS2, OsTPS7, Os-CPS2, TPS13, OsTPS13,OsHDS, OsIspG, IspG,HDR, OsHDR, OsIspH, IspH, OsHDR1, HDR1, OsLAS1, LAS1/OsHMBPP, OsHMBPP, HMBPP, OsIspH1, IspH1, YGL3, OsYGL3,CLA1, OsDXS1, dxs1, OsDXS, DXS, OsTKL1, TKL1,OsDXS, OsDXS3, dxs3, DXS2, OsDXS2,OsKS7, KS7, KSL7, OsKSL7, DTC1, OsDTC1, OsKS3, OsDTC1/OsKS7, OsTPS6, TPS6, TPS38, OsTPS38,OsCMK, CMK, OsIspE, IspE, OsGRY340, AL4, OsAL4,OsMCS, IspF, OsIspF, OsMDS, MDS,OsCMS, OsIspD, IspD, OsMCT, MCT,OsDXR, OsIspC, IspC,OsDXS2, dxs2
30681	17893735	Onishi,K., Takagi,K., Kontani,M., Tanaka,T. and Sano,Y.	Different patterns of genealogical relationships found in the two major QTLs causing reduction of seed shattering during rice domestication	Genome	50(8)	757-766	2007	qSH3,QSH1,SH4	,qSH1, qsh1, qSH-1, RIL1, OsRIL1 ,sh4, SH4, SHAT2, SHA1, qSH4, QSH4, OsSh4, Sh4, Osh4, OsMSL23, MSL23
30682	0	Park,S. and Thornburg,R.W.	Characterization of UMP kinase cDNAs from rice (Accession Nos. AF187062 and AF187063) (PGR 99-174)	Plant Physiol.	121(4)	1383	1999		
30683	17913295	Peng,L.T., Shi,Z.Y., Li,L., Shen,G.Z. and Zhang,J.L.	Overexpression of transcription factor OsLFL1 delays flowering time in Oryza sativa	J. Plant Physiol.	165(8)	876-885	2008	LFL1,LFL2	OsLFL1, OsSTA29, STA29,OsLFL2, OsLFL3, LFL3
30684	0	Peng,L.T.	The functional analysis of gamma-glutamylcysteine synthetase gene in Oryza sativa	Thesis  Institute of Plant Physiology and Ecology, SIBS, CAS, Shanghai, China			2003		
30685	18562767	Qi,J., Qian,Q., Bu,Q., Li,S., Chen,Q., Sun,J., Liang,W., Zhou,Y., Chu,C., Li,X., Ren,F., Palme,K., Zhao,B., Chen,J., Chen,M. and Li,C.	Mutation of the Rice NARROW LEAF1 Gene, Which Encodes a Novel Protein, Affects Vein Patterning and Polar Auxin Transport	Plant Physiol.	147(4)	1947-1959	2008	NAL1	nal1, cul1, GPS, SPIKE, SPIKE/LSCHL4/NAL1/GPS, SPIKE/NAL1, LSCHL4, OsNAL1
30686	17506327	Qiu,D., Xiao,J., Ding,X., Xiong,M., Cai,M., Cao,Y., Li,X., Xu,C. and Wang,S.	OsWRKY13 mediates rice disease resistance by regulating defense-related genes in salicylate- and jasmonate-dependent signaling	Mol. Plant Microbe Interact.	20(5)	492-499	2007	ICS1,PR1A,PR10A,EDS1,NH1,PAL1,WRKY13,PAD4,AOS2,CHS,_	OsICS1, OsICS, ICS,OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1, OsPR1b, PR1alpha, OsPR1alpha,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsEDS1,OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2, DLN5, OsDLN5,  OsBTBA1, BTBA1,OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6,OsWRKY13,OsPAD4,OsAOS2, CYP74A2, OsAOS, OsAOS1,CHS*, Oschs, chs, chas, OsCHS, OsCHS1, CHS1, OsPKS26, PKS26, OsCHS24, CHS24, OsCHS27, CHS27,Lox2:Os:1, OsLOX9, LOX9, OsLOX8, LOX8, OsLOX2, LOX2, OsRLL, OsHI-LOX, HI-LOX, RLL2 LOX, RLL2, Lox2osPil, OsLOX2;1, LOX2;1, OsLOX1, OsLOX7, LOX7
30688	18467323	Qu,L.Q., Xing,Y.P., Liu,W.X., Xu,X.P. and Song,Y.R.	Expression pattern and activity of six glutelin gene promoters in transgenic rice	J. Exp. Bot.	59(9)	2417-2424	2008	GLUB3.P,GLUA3,GLUB4,GLUC,GLUA1,GLUA2	GluB-3.P, GluB-3,Glua3*, GLUA-3, GT22, GT3, Glu21, GluA-3, OsEnS-47, EnS-47, GLU3,GluB4, GluB-4, GluB-5, GluB5, GluB-4/5,GluC, OsEnS-36, EnS-36, GLU2.2, GluC-1, OsGluC-1,Glua1*, Glua1, GLUA-1, GluA-1, GluA1, Glu19, OsEnS-16,Glua2*, Glua2, GLUA-2, GluA-2, Glu20, GluA2, OsEnS-137
30689	0	Raghuvanshi,S., Dhingra,A., Grover,M., Kelkar,A., Bansal,K.C., Sharma,A.K., Khurana,J.P., Maheshwari,S.C. and Tyagi,A.K.	Regulation of gene expression and transformation in plastids of rice	(in) GENERAL MEETING OF THE INTERNATIONAL PROGRAM ON RICE BIOTECHNOLOGY: 319; Phuket, Thailand 		319	1999		
30690	0	Rajguru,S.N., Burgos,N.R., Shivrain,V.K. and Stewart,J.M.	Mutations in the red rice ALS gene associated with resistance to imazethapyr	Weed Sci.	53(5)	567-577	2005	ALS	OsALS, AHAS, OsALS1, ALS1
30691	17339651	Rzewuski,G., Cornell,K.A., Rooney,L., Burstenbinder,K., Wirtz,M., Hell,R. and Sauter,M.	OsMTN encodes a 5'-methylthioadenosine nucleosidase that is up-regulated during submergence-induced ethylene synthesis in rice (Oryza sativa L.)	J. Exp. Bot.	58(6)	1505-1514	2007	MTN,_,SIP2	OsMTN,OsSAHH, SAHH,Sip2, OsARD1, ARD1, OsIDI1, IDI1, OsIDI1L/OsARD1
30692	18583359	Sakane,I., Kamataki,C., Takizawa,Y., Nakashima,M., Toki,S., Ichikawa,H., Ikawa,S., Shibata,T. and Kurumizaka,H.	Filament formation and robust strand exchange activities of the rice DMC1A and DMC1B proteins	Nucleic Acids Res.	36(13)	4266-4276	2008	DMC1B,DMC1A	OsDMC1B, OsDmc1B, Dmc1B, RiLIM15B ,OsDMC1A, OsDmc1A, Dmc1A, DMC1, OsDMC1, RiLIM15A, OsRad51
30693	0	Scheffler,B.E., Reddy,A., Hoffmann,I. and Wienand,U.	Chalcone synthase cDNA from Rice (Oryza sativa)	Plant Physiol.	109	722-722	1995	CHS	CHS*, Oschs, chs, chas, OsCHS, OsCHS1, CHS1, OsPKS26, PKS26, OsCHS24, CHS24, OsCHS27, CHS27
30694	2791032	Shikanai,T., Yang,Z.Q. and Yamada,Y.	Nucleotide sequence and molecular characterization of plasmid-like DNAs from mitochondria of cytoplasmic male-sterile rice	Curr. Genet.	15(5)	349-354	1989		
30695	0	Shimazu,J., Matsukura,C., Senda,M., Ishikawa,R., Akada,S., Harada,T., Tabata,S. and Niizeki,M.	Characterization of a DMC1 homologue, RiLIM15, in meiotic panicles, mitotic cultured cells, and mature leaves of rice (Oryza sativa L.)	Theor. Appl. Genet.	102(8)	1159-1163	2001	LIM15	RiLIM15*, RiLIM15
30696	18604208	Shomura,A., Izawa,T., Ebana,K., Ebitani,T., Kanegae,H., Konishi,S. and Yano,M.	Deletion in a gene associated with grain size increased yields during rice domestication	Nat Genet	40(8)	1023-1028	2008	GW5	qSW5/GW5, GSE5, OsGSE5, OsGW5, qSW5
30697	0	Sikka,V.K., Choi,S.-B., Kavakli,I.H., Gupta,S., Ito,H. and Okita,T.W.	Subcellular compartmentation and allosteric regulation of the rice endosperm ADP-glucose pyrophosphorylase	Plant Sci.	161(3)	461-468	2001	AGPS1	OsAGPS1, APS1, OsAPS1, AGPsma
30699	17520342	Song,D., Li,G., Song,F. and Zheng,Z.	Molecular characterization and expression analysis of OsBISERK1, a gene encoding a leucine-rich repeat receptor-like kinase, during disease resistance responses in rice	Mol. Biol. Rep.	35(2)	275-283	2008	SG2,TMS10,_,SERK1	OsSERK1, SERK1, OsBAK1, BAK1, OsSERK1/OsBAK1, OsBISERK1, BISERK1, OsSerk1, OsBAK1-1, 08SG2/OsBAK1, 08SG2, OsSG2,OsSERK4, OsSERL9, OsSERK2, OsBAK1-5, OsTMS10, SERK4, SERL9, SERK2, BAK1-5, OsBAK1, BAK1,OsSERK3, OsSERL6, OsBI-SERK1, BI-SERK1, OsBAK1-3,OsSERK1, OsSERK2, OsBiSERK1, SERK2, BiSERK1, OsSerk2, OsBAK1-2
30700	17727616	Sugimoto,H., Kusumi,K., Noguchi,K., Yano,M., Yoshimura,A. and Iba,K.	The rice nuclear gene, VIRESCENT 2, is essential for chloroplast development and encodes a novel type of guanylate kinase targeted to plastids and mitochondria	Plant J.	52(3)	512-527	2007	V2,GK1	v2, mGmk, GMK, Gmk, pt/mtGK, pt/mt GK, OsV2, OsGMK,cGK, OsGK1
30701	18666953	Sun,A.J., Xu,H.L., Gong,W.K., Zhai,H.L., Meng,K., Wang,Y.Q., Wei,X.L., Xiao,G.F. and Zhu,Z.	Cloning and Expression Analysis of Rice Sucrose Transporter Genes OsSUT2M and OsSUT5Z	J. Integr. Plant Biol.	50(1)	62-75	2008		
30703	0	Sun,T. and Yin,L.	Profiling of microarray data for iron deficiency in rice root	Bioinformatics	2(3)	1-5	2004		
30704	18676878	Suzaki,T., Yoshida,A. and Hirano,H.	Functional Diversification of CLAVATA3-Related CLE Proteins in Meristem Maintenance in Rice	Plant Cell	20	2049-58	2008	_,CLE402,FON2,FON1	FCP2,FCP1,OsFCP1,  FCP1/Os CLE402, Os CLE402, OsCLE402,fon2, OsFON2, FON4, OsFON4, FON2/FON4, TG1,OsFON1, fon1, OsRLCK219, RLCK219
30705	16972867	Suzuki,M., Takahashi,M., Tsukamoto,T., Watanabe,S., Matsuhashi,S., Yazaki,J., Kishimoto,N., Kikuchi,S., Nakanishi,H., Mori,S. and Nishizawa,N.K.	Biosynthesis and secretion of mugineic acid family phytosiderophores in zinc-deficient barley	Plant J.	48(1)	85-97	2006	MTK1,IDI4,SIP2A,FDH,NAS1,SAMS2,MTN,APT1,DEP,YSL15,NAAT1	OsMTK, OsMTK1, MTK,OsIDI4,Sip2A, ARD 2, ARD2, OsARD2, OsARD, IDI1, OsIDI1,OsFDH, FDH 1, FDH1, OsFDH1,OsNAS1,OsSAM2, SAM2, OsSAMS2, OS-SAMS2,OsMTN,OsAPT1, APRT,OsDEP,OsYSL15, OsYs7,OsNAAT1
30706	17696613	Sweeney,M.T., Thomson,M.J., Cho,Y.G., Park,Y.J., Williamson,S.H., Bustamante,C.D. and McCouch,S.R.	Global dissemination of a single mutation conferring white pericarp in rice	PLoS Genet.	3 (8)	E133	2007	RC	Rc, OsbHLH017, OsbHLH17, SD7-1, qSD7-1/qPC7, OsGL3C, GL3C
30707	17350935	Tabuchi,M., Abiko,T. and Yamaya,T.	Assimilation of ammonium ions and reutilization of nitrogen in rice (Oryza sativa L.)	J. Exp. Bot.	58(9)	2319-2327	2007	GLN1;1,GLT2,GLN1;3,GLN1;2,GLT1	OsGLN1;1, GS1, RGS28, OsGS1;1, GS1;1, OsGS, GS1, OsGS1, GLN1-1, OsGS1-1, GS1-1, GS1.1, OsGS1.1,OsGLT2, OsNADH-GOGAT2, NADH-GOGAT2, OsGOGAT2, GOGAT2, OsGLU2, GLU2,OsGLN1;3, OsGS1;3, GS1;3,OsGLN1;2, GSr, RGS8, OsGS1;2, GS1;2, GS1, OsGS1-2, GS1-2, OsGS1.2, GS1.2,OsGLT1, OsNADH-GOGAT1, NADH-GOGAT1, OsNADH-GOGAT, GOGAT, NADH-GOGAT, OsGOGAT1, GOGAT1, OsGLU1
30708	0	Tada,Y.	PCR-amplified resistance gene analogs link to resistance loci in rice	Breeding Science	49(3)	267-273	1999	_,_,_,_,_,_,_,_,_,_	AT320-101,A320-111,T320-11,A320-4,A320-103,AT320-1,AT320-110,A320-114,T580-9,A1.1-4
30709	0	Takei,N., Nakazaki,T., Tsuchiya,T., Kowyama,Y. and Ikehashi,H.	Isolation of a pistil-specific chitinase gene in rice(Oryza sativa L.).(in Japanese)	Breeding Science	48	281	1998		
30710	0	Tang,S.J., Hou,Y.M. and Liu,L.S.	Studies on repeated DNA sequence of wide compatibility rice	(in) Yuan,L.P. (Ed.); CURRENT STATUS OF TWO LINE HYBRID RICE RESEARCH: 280-285; Agricultural Press, China 		280-285	1992		
30712	18664295	Tanthanuch,W., Chantarangsee,M., Maneesan,J. and Ketudat Cairns,J.R.	Genomic and expression analysis of glycosyl hydrolase family 35 genes from rice (Oryza sativa L.)	BMC Plant Biol	8(1)	84	2008	BGAL13,BGAL2,BGAL9,BGAL10,BGAL11,BGAL12,BGAL8,BGAL3,BGAL7,BGAL4,BGAL15,BGAL14,BGAL6,BGAL5,BGAL1	OsBgal13, OsBGal13,OsBgal2, OsBGal2,OsBgal9, OsBGal9,OsBgal10, OsBGal10,OsBgal11, OsBGal11,OsBgal12, OsBGal12,OsBgal8, OsBGal8,OsBgal3, OsBGal3,OsBgal7, OsBGal7, CARSR12,OsBgal4, OsBGal4,OsBgal15, OsBGal15,OsBgal14, OsBGal14, OsEnS-135, OsMEG2, MEG2,OsBgal6, OsBGal6,OsBgal5, OsBGal5, RMP1 ,OsBgal1, beta-gal, OsBGal1
30713	17449652	Terada,R., Johzuka-Hisatomi,Y., Saitoh,M., Asao,H. and Iida,S.	Gene targeting by homologous recombination as a biotechnological tool for rice functional genomics	Plant Physiol.	144(2)	846-856	2007	ADH2,ADH3	Adh2*, Adh2, OsADH2,Adh3, adh2(t)*
30714	16188032	Rice Chromosomes 11 and 12 Sequencing Consortia	The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications	BMC Biol.	3	20	2005		
30715	18193457	Thirumurugan,T., Ito,Y., Kubo,T., Serizawa,A. and Kurata,N.	Identification, characterization and interaction of HAP family genes in rice	Mol. Genet. Genomics	279(3)	279-289	2008	HD5,HAP2I,HAP5G,HAP2B,HAP2E,HAP3G,HAP5D,HAP2F,DRAP1,HAP2A,HAP3I,HAP3J,HAP5A,HAP5B,HAP5E,HAP5F,HAP5C,HAP2J,HAP2D,HAP2C,HAP3D,HAP3K,HAP2H,HAP3F,LEC1,HAP2G,HAP3B,HAP3C,DRAP2,HAP3A	Hd5(t)*, Hd5, qHD5, HAP3H, OsHAP3H, NF-YB, CBF-A, DTH8 , qHD5(t)*, Ghd8, Ghd8/DTH8, Lhd1, NF-YB11, OsNF-YB11, NFYB11, LH8, DTH8/Ghd8, RH8, DTH8/Ghd8/LHD1, CAR8, DTH8/Ghd8/ OsHAP3H, EF8, OsEF8,OsHAP2I, NF-YA, CBF-B, NF-YA8, OsNF-YA8, OsEnS-136, NFYA8,OsHAP5G, NF-YC, CBF-C, OsNF-YC3, Os-NF-YC3, NF-YC3, NFYC3,OsHAP2B, NF-YA, CBF-B, NF-YA9, OsNF-YA9, NFYA9,OsHAP2E, NF-YA, CBF-B, NF-YA2, OsNF-YA2, NFYA2,OsHAP3G, NF-YB, CBF-A, OsNF-YB6, NF-YB6, NFYB6,OsHAP5D, NF-YC, CBF-C, OsNF-YC6, Os-NF-YC6, NF-YC6, NFYC6,OsHAP2F, NF-YA, CBF-B, NF-YA10, OsNF-YA10, NFYA10,OsDrAp1, DrAp1,OsHAP2A, NF-YA, CBF-B, NF-YA7, OsNF-YA7, NFYA7,OsHAP3I, NF-YB, CBF-A, NF-YB8, OsNF-YB8, NFYB8,OsHAP3J, NF-YB, CBF-A, OsNF-YB5, NF-YB5, NF-YB5,OsHAP5A, NF-YC, CBF-C, OsNF-YC1, Os-NF-YC1, NF-YC1, NFYC1 , OsNF-YC4-2, NF-YC4-2,OsHAP5B, NF-YC, CBF-C, OsNF-YC4, Os-NF-YC4, NF-YC4, NFYC4, OsNF-YC4-3, NF-YC4-3,OsHAP5E, NF-YC, CBF-C, OsNF-YC7, Os-NF-YC7, NF-YC7, NFYC7,OsHAP5F, NF-YC, CBF-C, OsNF-YC5, Os-NF-YC5, NF-YC5, NFYC5,OsHAP5C, NF-YC, CBF-C, OsNF-YC2, Os-NF-YC2, NF-YC2, NFYC2, OsNF-YC4-1, NF-YC4-1,OsHAP2J, NF-YA, CBF-B, NF-YA5, OsNF-YA5, NFYA5,OsHAP2D, NF-YA, CBF-B, NF-YA4, OsNF-YA4, NFYA4,OsHAP2C, NF-YA, CBF-B, NF-YA1, OsNF-YA1, NFYA1,OsHAP3D, OsEnS-83, OsNF-YB9, NF-YB9, NFYB9, OsLEC1A, LEC1A,OsHAP3K/OsNF-YB1, OsHAP3K, OsNF-YB1, NF-YB1, nf-yb1, OsLEC1, OsNF-YB-1, NFYB1, OsEnS-41,OsHAP2H, NF-YA, CBF-B, NF-YA3, OsNF-YA3, NFYA3,OsHAP3F, NF-YB, CBF-A, NF-YB10, OsNF-YB10, NFYB10,OsHAP3E, HAP3E, OsLEC1/OsHAP3E, OsLEC1, LEC1, OsNF-YB7, NF-YB7, NFYB7, L1L ,OsHAP2G, NF-YA, CBF-B, NF-YA6, OsNF-YA6, NFYA6,OsHAP3B, OsNF-YB-3, NFYB3, OsNF-YB4, NF-YB4, NFYB4, OsHAP3C, HAP3C,OsHAP3C, OsNF-YB-4, NFYB4, OsNF-YB3, NF-YB3, NFYB3, OsHAP3B, HAP3B,OsDrAp2, DrAp2, OsHAPL1, HAPL1, DLN150, OsDLN150,OsHAP3A,OsNF-YB-2, NFYB2, NF-YB2
30716	17938177	Tozawa,Y., Nozawa,A., Kanno,T., Narisawa,T., Masuda,S., Kasai,K. and Nanamiya,H.	Calcium-activated (p)ppGpp synthetase in chloroplasts of land plants	J. Biol. Chem.	282(49)	35536-45	2007	CRSH1,CRSH2,CRSH3	OsCRSH1,OsCRSH2,OsCRSH3
30717	18247046	Uchiyama,Y., Suzuki,Y. and Sakaguchi,K.	Characterization of plant XRCC1 and its interaction with proliferating cell nuclear antigen	Planta.	227(6)	1233-1241	2008	FEN1,_	OsFEN1, OsFEN-1a, FEN-1,OsXRCC1
30718	17644730	Ueguchi-Tanaka,M., Nakajima,M., Katoh,E., Ohmiya,H., Asano,K., Saji,S., Hongyu,X., Ashikari,M., Kitano,H., Yamaguchi,I. and Matsuoka,M.	Molecular interactions of a soluble gibberellin receptor, GID1, with a rice DELLA protein, SLR1, and gibberellin	Plant Cell	19(7)	2140-2155	2007	GID1,SLR1	gid1, OsGID1, Thl, Os GID1,slr1-1, slr1, slr, GAI, OsGAI, OsSLR1, Os SLR1, OsRGA1, OsGRAS-18, OsGRAS-18, GRAS-18, GRAS18, SLR-1
30719	18185911	Wang,R., Shen,W., Liu,L., Jiang,L., Liu,Y., Su,N. and Wan,J.	A novel lipoxygenase gene from developing rice seeds confers dual position specificity and responds to wounding and insect attack	Plant Mol. Biol.	66(4)	401-414	2008	LOX1	OsLOX1, OsLOX5
30720	0	Wang,S. and Xiao,X.	Isolation and linkage mapping of disease-resistance-like sequences from various rice cultivars, containing different recognition specificities	Plant Breeding	121	203-209	2002	_,_,_,_,_,_	YR1, YR7, YR11, YR20, YR22, YR24,YR2, YR6, YR9, YR10, YR21, YR23,YR48,Osh359-2,,
30721	18506478	Wang,Y., Xiao,Y., Zhang,Y., Chai,C., Wei,G., Wei,X., Xu,H., Wang,M., Ouwerkerk,P.B. and Zhu,Z.	Molecular cloning, functional characterization and expression analysis of a novel monosaccharide transporter gene OsMST6 from rice (Oryza sativa L.)	Planta.	228(4)	525-535	2008	MST6,MST2,MST5,MST1,MST8,MST4,MST3	OsMST6, STP6, OsSTP6,OsMST2, OsSTP2, STP2,OsMST5, OsSTP5, STP5,OsMST1, OsSTP1, STP1,OsMST8, OSMST8, OsSTP8, STP8,OsMST4, OsSTP4, STP4,OsMST3, OsSTP3, STP3
30722	17874189	Wang,Y., Xu,H., Wei,X., Chai,C., Xiao,Y., Zhang,Y., Chen,B., Xiao,G., Ouwerkerk,P.B., Wang,M. and Zhu,Z.	Molecular cloning and expression analysis of a monosaccharide transporter gene OsMST4 from rice (Oryza sativa L.)	Plant Mol. Biol.	65(4)	439-451	2007	MST3,MST2,MST8,MST5,MST4,MST1,MST6	OsMST3, OsSTP3, STP3,OsMST2, OsSTP2, STP2,OsMST8, OSMST8, OsSTP8, STP8,OsMST5, OsSTP5, STP5,OsMST4, OsSTP4, STP4,OsMST1, OsSTP1, STP1,OsMST6, STP6, OsSTP6
30723	0	Wu,J., Cramer,C.L. and Hatzios,K.K.	Nucleotide sequence of a cDNA encoding the second glutathione S-transferase from rice (Oryza sativa) (accession No. AJ002381)	Plant Physiol.	117	1126-1126	1998		
30724	2884170	Wu,N., Cote,J.C. and Wu,R.	Nucleotide sequence of the rice cytochrome f gene and the presence of sequence variation near this gene	Gene	50(1-3)	271-278	1986	PETA	petA, Cytf, cytF, Cyt f, OsPETA
30725	0	Wu,N.-H., Cote,J.-C. and Wu,R.	Structure of the chloroplast psbA gene encoding the Q-B protein from Oryza sativa L	Dev Genet.	8	339-350	1987	PSBA	PsbA, psbA, OsPsbA, PSBD1, OsPSBD1, psbD1
30726	17535821	Wu,Z., Zhang,X., He,B., Diao,L., Sheng,S., Wang,J., Guo,X., Su,N., Wang,L., Jiang,L., Wang,C., Zhai,H. and Wan,J.	A chlorophyll-deficient rice mutant with impaired chlorophyllide esterification in chlorophyll biosynthesis	Plant Physiol.	145(1)	29-40	2007	YGL1,CAB1R,CAB2R	OsYGL1, CHLG, Ygl1, CS, OsCHLG,cab1R, LHCP, CAB, OsLhcb1, Lhcb1, Cab1, OsCAB1, Lhcb1b, OsLhcb1b, CAB2R,Oscab2R, CAB-2, OsLhcp, Lhcb1, Lhcb1a, OsLhcb1, OsLhcb1a 
30727	0	Xiang,T.	Cloning and characterization of a full-length cDNA encoding the RuBPCase small subunit(rbcS) in rice(Oryza sativa L.)	J. Zhejiang Univ. Sci.	32(3)	314-319	2005	RBCS3	RbcS3, OsRBCS3, OsRbcS3, rbcS 
30728	17426956	Xiao,B., Huang,Y., Tang,N. and Xiong,L.	Over-expression of a LEA gene in rice improves drought resistance under the field conditions	Theor. Appl. Genet.	115(1)	35-46	2007	LEA3-1	OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3, OsLEA3A, LEA3A
30729	0	Xiao,C.	Sequencing of the cDNA encoding the 16 kDA proteolipid subunit of vacuolar H+-ATPase from rice and homology searching	Thesis  Biochemistry, Fudan University			1995		
30730	0	Xie,Y., Cai,Y., Peng,Z. and Wu,R.	Cloning and structure analysis of histone H3 gene and small subunit gene of 1,5-biphosphoric acid ribulose carboxylase rubisco of rice	Sci. China B	35(No.2)	148-160	1987	_	H3
30731	18325341	Xu,D.Q., Huang,J., Guo,S.Q., Yang,X., Bao,Y.M., Tang,H.J. and Zhang,H.S.	Overexpression of a TFIIIA-type zinc finger protein gene ZFP252 enhances drought and salt tolerance in rice (Oryza sativa L.)	FEBS Lett.	582	1037-1043	2008	LEA3-1,ZFP252,PROT,P5CS,DREB1A	OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3, OsLEA3A, LEA3A,RZF71, DLN263, OsDLN263,OsProT, ProT, OsProT2, ProT2,OsP5CS, P5CS1, OsP5CS1, OsALDH18B1, ALDH18B1, OsP5CS-1, P5CS-1,OsDREB1A, Os DREB1A, CBF3, OsCBF3, OsDREB1A/OsCBF3, ERF24, OsERF24, OsERF024, OsERF#024, AP2/EREBP#114, AP2/EREBP114, OsDREBL
30732	18454147	Xue,W., Xing,Y., Weng,X., Zhao,Y., Tang,W., Wang,L., Zhou,H., Yu,S., Xu,C., Li,X. and Zhang,Q.	Natural variation in Ghd7 is an important regulator of heading date and yield potential in rice	Nat Genet	40(6)	761-767	2008	GHD7	Ghd2, Ghd7, OsGhd7, OsCCT26, OsCMF8, OsI, Ghd7/Hd4, Hd4, EH7-1/Hd4, Ghd7-0a, EH7-1, EH7/Ghd7, EH7, OsEH7, GLW7.1, OsGLW7.1
30733	0	Xu,Z., Yamaguchi,I., Chen,J., Wan,J., Jiang,H. and Gao,X.	Cloning and Expression Analysis Of NADPH Oxidoreductase-Like Gene from Rice	Rice Science			2006		
30734	18487352	Yamada,T., Matsuda,F., Kasai,K., Fukuoka,S., Kitamura,K., Tozawa,Y., Miyagawa,H. and Wakasa,K.	Mutation of a rice gene encoding a phenylalanine biosynthetic enzyme results in accumulation of phenylalanine and tryptophan	Plant Cell	20(5)	1316-1329	2008	MTR1	Mtr1, PDT, ADT, ADT1/MTR1, OsADT1, OsMTR1
30735	18515498	Yamaji,N., Mitatni,N. and Ma,J.F.	A transporter regulating silicon distribution in rice shoots	Plant Cell	20(5)	1381-1389	2008	LSI6,LSI1,LSI2	Lsi6, OsNIP2;2, NIP2-2, OsLsi6, OsNIP2.2/OsLsi6, OsNIP2.2, NIP2.2,lsi1, NIP2-1, OsNIP2;1, NIP2;1, OsLsi1, lsi(t), OsNIP2.1/OsLsi1/OsSIIT1, OsNIP2.1, NIP2.1,Lsi2, SIET1, OsLsi2, OsSIET1
30736	17895582	Yamamoto,A., Hirouchi,T., Mori,T., Teranishi,M., Hidema,J., Morioka,H., Kumagai,T. and Yamamoto,K.	Biochemical and biological properties of DNA photolyases derived from utraviolet-sensitive rice cultivars	Genes Genet. Syst.	82(4)	311-319	2007	CPD	qUVR-10, OsPHR, PHR, OsCPD
30737	17578919	Yang,G., Zhang,F., Hancock,C.N. and Wessler,S.R.	Transposition of the rice miniature inverted repeat transposable element mPing in Arabidopsis thaliana	Proc. Natl. Acad. Sci. U.S.A.	104(26)	10962-10967	2007	MPING,PING,PONG	mPing,Ping,Pong
30738	0	Yang,H.J.		Thesis  Department of Biological Sciences, University of Cambridge, Cambridge, United Kingdom			2001		
30739	17932646	Yang,S., Gu,T., Pan,C., Feng,Z., Ding,J., Hang,Y., Chen,J.Q. and Tian,D.	Genetic variation of NBS-LRR class resistance genes in rice lines	Theor. Appl. Genet.	116(2)	165-177	2008	_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,PIB	,,,,,,PIC22,,,,,,,,,,,,,,,Pi b(Pi s), Pis, Pib, Pi-s, Pi-hy
30740	17716996	Yara,A., Yaeno,T., Hasegawa,M., Seto,H., Montillet,J.L., Kusumi,K., Seo,S. and Iba,K.	Disease resistance against Magnaporthe grisea is enhanced in transgenic rice with suppression of omega-3 fatty acid desaturases	Plant Cell Physiol.	48(9)	1263-1274	2007	MSRMK2,FAD8,PR10A,PR1B,FAD7,FAD3,SH11	OsMSRMK2, OsMAPK5, OsMAP1, OsMPK3, OsBIMK1, OsMAPK2, MPK5, BIMK1, MAPK2, MAPK5, MPK3, OsMPK5, OsMAPK3, OsMAPK5b, MAPK3,OsFAD8, Osfad8,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1, OsPR1a, PR1a,OsFAD7,OsFAD3,OsJAmyb, JAmyb, OsJAMyb, OsMYB21, MYB21, Os2R_MYB91, 2R_MYB91, OgSH11, OsSH11
30741	17541629	Yuan,B., Shen,X., Li,X., Xu,C. and Wang,S.	Mitogen-activated protein kinase OsMPK6 negatively regulates rice disease resistance to bacterial pathogens	Planta.	226(4)	953-960	2007	PR10A,WRKY12,NH1,PR5,CHT1,PAL1,MPK6	PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsWRKY12,OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2, DLN5, OsDLN5,  OsBTBA1, BTBA1,OsPR5, Pir2, PR-5, PR5-1,Cht1*(Chi1), Ch16, Cht1, CHT-1, CH16, RC24, OsChia1a, OsChia1, Chi1, Cht1*, Chi-1, Cht-1, Cht1, RCC1, OsCht-1, PR3, OsPR3,OsPAL, Pal1*, Pal1, PAL, Pal_1, PalI, PAL2, OsPAL01, PAL01, OSPAL, CP-1, GP-1, OsPAL1, PAL3, OsPAL3,OsMPK6, OsDR6, DR6, OsMPK4, MPK4, OsMAPK4, MAPK4
30742	18258694	Yuan,J., Chen,D., Ren,Y., Zhang,X. and Zhao,J.	Characteristic and Expression Analysis of a Metallothionein Gene, OsMT2b, Down-Regulated by Cytokinin Suggests Functions in Root Development and Seed Embryo Germination of Rice	Plant Physiol.	146(4)	1637-1650	2008	MT2B	OsMT2b, MT2b, OsMT-I-2c, MT-I-2c, MT2C, MT2BL, OsMT2C, OsMT2BL, MTE, OsMT2b1, OsMT2b2, MT2b1, MT2b2, MTb, met1, OsMTe, OsMT-I-2c, OsB22EL8, MTe, MT-I-2c, B22EL8
30743	15685292	Yu,J., Wang,J., Lin,W., Li,S., Li,H., Zhou,J., Ni,P., Dong,W., Hu,S., Zeng,C., Zhang,J., Zhang,Y., Li,R., Xu,Z., Li,S., Li,X., Zheng,H., Cong,L., Lin,L., Yin,J., Geng,J., Li,G., Shi,J., Liu,J., Lv,H., Li,J., Wang,J., Deng,Y., Ran,L., Shi,X., Wang,X., Wu,Q., Li,C., Ren,X., Wang,J., Wang,X., Li,D., Liu,D., Zhang,X., Ji,Z., Zhao,W., Sun,Y., Zhang,Z., Bao,J., Han,Y., Dong,L., Ji,J., Chen,P., Wu,S., Liu,J., Xiao,Y., Bu,D., Tan,J., Yang,L., Ye,C., Zhang,J., Xu,J., Zhou,Y., Yu,Y., Zhang,B., Zhuang,S., Wei,H., Liu,B., Lei,M., Yu,H., Li,Y., Xu,H., Wei,S., He,X., Fang,L., Zhang,Z., Zhang,Y., Huang,X., Su,Z., Tong,W., Li,J., Tong,Z., Li,S., Ye,J., Wang,L., Fang,L., Lei,T., Chen,C., Chen,H., Xu,Z., Li,H., Huang,H., Zhang,F., Xu,H., Li,N., Zhao,C., Li,S., Dong,L., Huang,Y., Li,L., Xi,Y., Qi,Q., Li,W., Zhang,B., Hu,W., Zhang,Y., Tian,X., Jiao,Y., Liang,X., Jin,J., Gao,L., Zheng,W., Hao,B., Liu,S., Wang,W., Yuan,L., Cao,M., McDermott,J., Samudrala,R., Wang,J., Wong,G.K. and Yang,H.	The Genomes of Oryza sativa: A History of Duplications	PLos Biol.	3 (2)	E38	2005		
30744	12602862	Yu,R.M.K., Zhou,Y., Xu,Z.-F., Chye,M.L. and Kong,R.Y.C.	Two genes encoding protein phosphatase 2A catalytic subunits are differentially expressed in rice	Plant Mol. Biol.	51(3)	295-311	2003	PP2A-3,PP2A-1	OsPP2A-3, PP2A3, OsPP20,OsPP2A-1, PP2A1, OsPP88
30745	8790296	Zeltz,P., Kadowaki,K., Kubo,N., Maier,R.M., Hirai,A. and Kossel,H.	A promiscuous chloroplast DNA fragment is transcribed in plant mitochondria but the encoded RNA is not edited	Plant Mol. Biol.	31(3)	647-656	1996	RPOB,RPOB	rpoB, RpoB, Rpobeta,rpoB
30746	0	Zhang,J.-S., Gu,J., Liu,F.-H. and Chen,S.-Y.	A gene encoding a truncated large subunit of Rubisco is transcribed and salt-inducible in rice	Theor. Appl. Genet.	91	361-366	1995	RBCL	rbcL, rbcA, OsrbcL
30747	17182895	Zhang,L.B. and Ge,S.	Multilocus analysis of nucleotide variation and speciation in Oryza officinalis and its close relatives	Mol. Biol. Evol.	24(3)	769-783	2007	ADH1,SSIIC,CPD1,CPS1,D1,GBSSII,TFIIAGAMMA1,KS1,WX1,LHS1	Adh1, Adh1/2, adh1/adh2, OsADH1,OsSSIIc, SSII-1, SSII1 ,cbp1, R-CPD1, CBP I, CBP1, OsSCP65, SCP65,OsCPS1, OsCPS1ent, OsCPS, Os CPS1, OsTPS4, TPS4, TPS29, OsTPS29, OsCPS1-L, OsCPS1-S,d1, GPA1, GA1, OsGA1, RGA1, dwf1, XA7, RGA, D1/RGA1, D89, TGW5, OsTGW5, SRG5, OsSRG5,GBSS2, OsGBSSII, OsGBSS2,OsTFIIAgamma1, OsTFIIAc-1, TFIIAc-1, TFIIAgamma-1,OsKS1, KS1, KS1A, KSL1, OsKSL1, OsKS1A, OsKS1B, OsKS1C, Ks1, Os KS1, OsTPS26, TPS6, OsTPS6,wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx,OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO, OsLHS1, OsLG3b, LG3b, qLGY3, LGY3, DLN80, OsDLN80, OLR, OsOLR, GW3p6, OsGW3p6, OsMADS1GW3p6, MADS1GW3p6, qLGY3/OsLG3b/GW3p6
30748	17534720	Zhang,S., Gu,Y.Q., Singh,J., Coleman-Derr,D., Brar,D.S., Jiang,N. and Lemaux,P.G.	New insights into Oryza genome evolution: high gene colinearity and differential retrotransposon amplification	Plant Mol. Biol.	64(5)	589-600	2007	DREB1B,ERF133,DREB1A	OsDREB1B, ERF31, OsERF031, OsERF#031, OsERF31, AP2/EREBP#169, AP2/EREBP169, OsDREB1b, OsDREB1C, OsCBF1, CBF1,OsERF#133, OsERF133, AP2/EREBP#065, AP2/EREBP65, OsDREB1H, DREB1H, OsDREB1m, DREB1m,OsDREB1A, Os DREB1A, CBF3, OsCBF3, OsDREB1A/OsCBF3, ERF24, OsERF24, OsERF024, OsERF#024, AP2/EREBP#114, AP2/EREBP114, OsDREBL
30749	0	Zhang,X.		Thesis  National Center for Gene Research			1999		
30751	18162595	Zhao,N., Ferrer,J.L., Ross,J., Guan,J., Yang,Y., Pichersky,E., Noel,J.P. and Chen,F.	Structural, Biochemical and Phylogenetic Analyses Suggest that Indole-3-acetic Acid Methyltransferase Is An Evolutionarily Ancient Member of the SABATH Family	Plant Physiol.	146(2)	455-467	2008	IAMT1	OsIAMT1, OsSABATH4
30752	17249423	Zhou,B., Dolan,M., Sakai,H. and Wang,G.L.	The genomic dynamics and evolutionary mechanism of the Pi2/9 locus in rice	Mol. Plant Microbe Interact.	20(1)	63-71	2007	_,_,_,_,_,_,_,_,_,_,_,_,SOBIR1	NIP,Nbs5-Pi9, Nbs4-Pi2,Nbs2-Pi9, Pi9, Nbs2-Pi2, Nbs2-NPB,Nbs3-Pi9,Nbs6-Pi9,Nbs7-75, Nbs7-Pi2, Nbs5-NPB,Nbs9-75, Nbs9-Pi2, Nbs7-NPB,Nbs5-Pi2, Nbs3-NPB,Nbs6-Pi2, Nbs4-NPB,Nbs8-75, Nbs8-Pi2, Nbs6-NPB,Nbs4-Pi9, Nbs3-Pi2,Nbs1-Pi9, Nbs1-Pi2, Nbs1-NPB,PK, OsSOBIR1
30753	0	Zhou,Z., Zhu,Z., Liu,C., Zhang,H., Xiao,G. and Li,X.	Construction of a rice immature seeds cDNA library and molecular cloning of the oryzacystatin cDNA	Sci. China, C, Life Sciences	39(3)	320-328	1996	OC1	Oc1*, Oc1, OC-I, SPOC-I, OsCP1, Oc, OCI, OsCYS1, OsPR6b, PR6b
30754	17218640	Zhu,Q., Zheng,X., Luo,J., Gaut,B.S. and Ge,S.	Multilocus analysis of nucleotide variation of Oryza sativa and its wild relatives: severe bottleneck during domestication of rice	Mol. Biol. Evol.	24(3)	875-888	2007	SSIIC,CPD1,LHS1,WX1,KS1,TFIIAGAMMA1,ADH1,GBSSII,GL1-6,CATA	OsSSIIc, SSII-1, SSII1 ,cbp1, R-CPD1, CBP I, CBP1, OsSCP65, SCP65,OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO, OsLHS1, OsLG3b, LG3b, qLGY3, LGY3, DLN80, OsDLN80, OLR, OsOLR, GW3p6, OsGW3p6, OsMADS1GW3p6, MADS1GW3p6, qLGY3/OsLG3b/GW3p6,wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx,OsKS1, KS1, KS1A, KSL1, OsKSL1, OsKS1A, OsKS1B, OsKS1C, Ks1, Os KS1, OsTPS26, TPS6, OsTPS6,OsTFIIAgamma1, OsTFIIAc-1, TFIIAc-1, TFIIAgamma-1,Adh1, Adh1/2, adh1/adh2, OsADH1,GBSS2, OsGBSSII, OsGBSS2,Os0053, OsGL1-6,CATA1, Cat A1*, OSCAT-A, Cat2, CatA1, CAT-A, OsCatA, OsCAT, CAT, catA, OSCATA, OsCATc, OsCATA, OsCAT1A, CAT1, OsCAT1, OsCATC, OsCAT2
30755	0	Zhu,T., Song,F. and Zheng,Z.	Molecular Characterization of the Rice Pathogenesis-related Protein, OsPR-4b, and Its Antifungal Activity Against Rhizoctonia solani	J. Phytopathology	154(6)	378-384	2006	PR4B	OsPR4b, OsPR-4b
30756	0	Zhu,Y.	A new Myc-protein	Thesis  Department of Genetics, Shanghai Institute of Plant Physiology, Shanghai, China			2002		
30757	0	Zong,H., Jiang,Y. and Cao,K.	Isolation and Characterization of a rice QM gene, tumor suppressor or development regulator	Thesis  Biochemistry, Fudan University			1996		
30758	17604002	Zou,M., Guan,Y., Ren,H., Zhang,F. and Chen,F.	Characterization of alternative splicing products of bZIP transcription factors OsABI5	Biochem. Biophys. Res. Commun.	360(2)	307-313	2007	ABI5,VP1	OsABI5, OsbZIP10, OsABF1, OREB1, OsABI5-1, OsABI5-2, OsOREB1, OREB1 ,Vp1* (OSVP1), OsVP1, OsVp1, Vp1, ABI3, OsABI3, OsLFL4, OsVp-1, OSVP1
30759	18315873	Zou,X.H., Zhang,F.M., Zhang,J.G., Zang,L.L., Tang,L., Wang,J., Sang,T. and Ge,S.	Analysis of 142 genes resolves the rapid diversification of the rice genus	Genome Biol.	9 (3)	R49	2008		
30760	17022630	Jung YH, Rakwal R, Agrawal GK, Shibato J, Kim JA, Lee MO, Choi PK, Jung SH, Kim SH, Koh HJ, Yonekura M, Iwahashi H, Jwa NS.	Differential expression of defense/stress-related marker proteins in leaves of a unique rice blast lesion mimic mutant (blm).	J Proteome Res.	5(10)	2586-98	2006		
30761	15659436	Ishikawa S, Maekawa M, Arite T, Onishi K, Takamure I, Kyozuka J.	Suppression of Tiller Bud Activity in Tillering Dwarf Mutants of Rice	Plant Cell Physiol.	46(1)	79-86	2005	D10,D14,D3,D27,D17	d10(d15,d16), d16, d15, dwf9, d10, OsCCD8b, OsCCD8, CCD8, OsD10,d14(d10), dwf13, d10, d14, D88, HTD2, OsHTD2, OsD14, qPPB3, D88/D14, HTD4,d3, dwf3, D3/OsMAX2, Os_F0760, SOL1, OsORE9, ORE9, MAX2, OsRFPH2-10, RFPH2-10, OsD3,  OsFBL27, FBL27,d27(d t), dt, dwf23, d27, OsD27,d17(t), dwf14, d17, htd1, OsCCD7, CCD7, D17/HTD1, HTD1, OsHTD1, OsD17
30762		Khun LH, Sato S	Identification of few lateness genes in rice.	Breeding Research	4(Suppl. 2)	368	2002		
30764	16010732	Zhuang X, Xu Y, Chong K, Lan L, Xue Y, Xu Z.	OsAGAP, an ARF-GAP from rice, regulates root development mediated by auxin in Arabidopsis.	Plant Cell Environ.	28(2)	147-56	2005	AGAP	OsAGAP, OsC2DP13, C2DP13
30765		L.L. LIU, L. ZHAO, Q. LI, L. JIANG, C.M. WANG, W.W. ZHANG, S.J. LIU, L.M. CHEN, H.Q. ZHAI and J.M. WAN	Molecular cloning and expression of a novel glutamate decarboxylase gene in rice 	RGN	21	39-41	2004		
30767	17369428	Dai M, Zhao Y, Ma Q, Hu Y, Hedden P, Zhang Q, Zhou DX.	The rice YABBY1 gene is involved in the feedback regulation of gibberellin metabolism.	Plant Physiol.	144(1)	121-33	2007	D18,SD1,YAB1	d18-h  (d18-I, d18h), dwf15, d25, d18, d18-k, d18-AD, d18-dy, OsGA3ox2, ga3ox2, OsGA3OX2, GA3OX2, OsGA3ox-2, GA3ox-2, GA3ox1,sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2, OsPHQ1, OsPHq1, PHq1,OsYAB1, FIL1, osFIL1
30768	15759867	Zhao XQ, Liang GH, Zhou JS, Yan CJ, Cao XY, Gu MH.	Molecular mapping of two semidwarf genes in an indica rice variety Aitaiyin3 (Oryza sativa L.)]	Yi Chuan Xue Bao	32(2)	189-96	2005		
30769	11209709	Li X, Gu MH, Liang GH, Xu JF, Chen ZX, Yang HS.	[Chromosome location of a semidwarf gene sd-t in indica rice (O. sativa L.)]	Yi Chuan Xue Bao	28(1)	33-40	2001		
30770	17579813	Zeng D, Yan M, Wang Y, Liu X, Qian Q, Li J.	Du1, encoding a novel Prp1 protein, regulates starch biosynthesis through affecting the splicing of Wxb pre-mRNAs in rice (Oryza sativa L.).	Plant Mol. Biol.	65(4)	501-9	2007	DU1,WX1,_	du1,wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx,Du1L
30800	16289628	Ciaffi M, Paolacci AR, D'Aloisio E, Tanzarella OA, Porceddu E.	Cloning and characterization of wheat PDI (protein disulfide isomerase) homoeologous genes and promoter sequences.	Gene	366(2)	209-18	2006		
30801	16364243	Long L, Lin X, Zhai J, Kou H, Yang W, Liu B.	Heritable alteration in DNA methylation pattern occurred specifically at mobile elements in rice plants following hydrostatic pressurization.	Biochem. Biophys. Res. Commun.	340(2)	369-76	2006		
30802	16369532	Li L, Wang X, Stolc V, Li X, Zhang D, Su N, Tongprasit W, Li S, Cheng Z, Wang J, Deng XW.	Genome-wide transcription analyses in rice using tiling microarrays.	Nat Genet	38(1)	124-9	2006		
30803	16380417	Kawasaki T, Koita H, Nakatsubo T, Hasegawa K, Wakabayashi K, Takahashi H, Umemura K, Umezawa T, Shimamoto K.	Cinnamoyl-CoA reductase, a key enzyme in lignin biosynthesis, is an effector of small GTPase Rac in defense signaling in rice.	Proc. Natl. Acad. Sci. U.S.A.	103(1)	230-5	2006	CCR1,RAC1	OsCCR1,OsRAC1, OsRac1, Os Rac1, Rac1, Os-Rac1
30804	16381819	Ma J, Bennetzen JL.	Recombination, rearrangement, reshuffling, and divergence in a centromeric region of rice.	Proc. Natl. Acad. Sci. U.S.A.	103(2)	383-8	2006		
30805	16407940	Lowe DC.	Global change: a green source of surprise.	Nature	439(7073)	148-9	2006		
30806	16467140	Chapman BA, Bowers JE, Feltus FA, Paterson AH.	Buffering of crucial functions by paleologous duplicated genes may contribute cyclicality to angiosperm genome duplication.	Proc. Natl. Acad. Sci. U.S.A.	103(8)	2730-5	2006		
30807	16473138	Zhang L, Tamura K, Shin-ya K, Takahashi H.	The telomerase inhibitor telomestatin induces telomere shortening and cell death in Arabidopsis.	Biochim. Biophys. Acta	1763(1)	39-44	2006	TERT	OsTERT
30808	16483690	Morokuma, M.	Ethanolic fermentation and anoxia tolerance in four rice cultivars.	J. Plant Physiol.	164, no. 2	168	2007		
30809	16488558	Terol J, Domingo C, Talon M.	The GH3 family in plants: genome wide analysis in rice and evolutionary history based on EST analysis.	Gene	371(2)	279-90	2006		
30810	16500726	Stewart, J.M.	Alteration of oxidative and carbohydrate metabolism under abiotic stress in two rice (Oryza sativa L.) genotypes contrasting in chilling tolerance.	J. Plant Physiol.	164, no. 2	157	2007		
30811	16537502	Gill, B.S.	Gene evolution at the ends of wheat chromosomes.	Proc. Natl. Acad. Sci. U.S.A.	103, no. 11	4162	2006		
30812	16554820	Gilbert MJ, Thornton CR, Wakley GE, Talbot NJ.	A P-type ATPase required for rice blast disease and induction of host resistance.	Nature	440(7083)	535-9	2006		
30813	16632598	Wang BB, Brendel V.	Genomewide comparative analysis of alternative splicing in plants.	Proc. Natl. Acad. Sci. U.S.A.	103(18)	7175-80	2006		
30814	16644142	Shi X, Wang X, Li Z, Zhu Q, Tang W, Ge S, Luo J.	Nucleotide substitution pattern in rice paralogues: implication for negative correlation between the synonymous substitution rate and codon usage bias.	Gene	376(2)	199-206	2006		
30815	16645096	Veneault-Fourrey C, Barooah M, Egan M, Wakley G, Talbot NJ.	Autophagic fungal cell death is necessary for infection by the rice blast fungus.	Science	312(5773)	580-3	2006		
30816	16690022	Jain M, Nijhawan A, Tyagi AK, Khurana JP.	Validation of housekeeping genes as internal control for studying gene expression in rice by quantitative real-time PCR.	Biochem. Biophys. Res. Commun.	345(2)	646-51	2006	18S  rRNA,RUBQ2,RFA4,UBQ5,TUB4,GAPC2,EEF1A,25S rRNA,ACT1,UBC,EIF4A2	,rubq2, rub1, Ubq1, Rubq1, UBQ10 ,rfa4*, REFA4, refa4, eEF-1a, OsEF-1a, OsEF1A, EF1A, eIF-1-alpha,RPS27a, OsUBQ5, OsRPS27a,OsTUB4, TUBB4, OSTB-16, R1623, RTUB-1, Ostub16,GAPDH, OsGAPDH, OsGapC2,eEF-1alpha,25S rRNA,act1, AC1, RAC1, RAc1, ACT11, OsACT1,UBC, OsUBC32, UBC32,eIF-4a, EIF4A, OseIF4A, eIF4A2, eIF4A-3, OsRH23
30817	16702555	Li ZK, Arif M, Zhong DB, Fu BY, Xu JL, Domingo-Rey J, Ali J, Vijayakumar CH, Yu SB, Khush GS.	Complex genetic networks underlying the defensive system of rice (Oryza sativa L.) to Xanthomonas oryzae pv. oryzae.	Proc. Natl. Acad. Sci. U.S.A.	103(21)	7994-9	2006		
30818	16753273	Iwamoto M, Higo K.	Accumulation of sense-antisense transcripts of the rice catalase gene CatB under dark conditions requires signals from shoots.	Gene	377()	186-94	2006	CATB	CatB, CAT-B, OsCatB, OsCATB, OsCAT1B, CAT1B, CAT2, OsCAT2
30819	16763049	Yadav, N.S.	Identification of bifunctional delta12/omega3 fatty acid desaturases for improving the ratio of omega3 to omega6 fatty acids in microbes and plants.	Proc. Natl. Acad. Sci. U.S.A.	103, no. 25	9446	2006		
30820	16769152	Jin, S.	Molecular cloning and characterization of an arginine decarboxylase gene up-regulated by chilling stress in rice seedlings.	J. Plant Physiol.	164, no. 5	645	2007	ADC1	OsADC1, ARGDC, ADC, OsAdc1
30821	16809532	Ort, Donald R.	Food for thought: lower-than-expected crop yield stimulation with rising CO2 concentrations.	Science	312, no. 5782	1918	2006		
30822	16822623	Frankel N, Carrari F, Hasson E, Iusem ND.	Evolutionary history of the Asr gene family.	Gene	378	74-83	2006	ASR5,ASR6,ASR2,ASR4,RBLS2,ASR3	OsASR5, Asr5, Asr1, OsASR1, OsASR2, ASR2,Asr6,OsAsr2, OsASR4, ASR4, OsASR6, ASR6,Asr4, OsASR6, OsASR2, Asr2, OsASR1, ASR1,ASR1, OsAsr1, OsASR3, ASR3, Asr3, OsRBLS2,Asr3, OsASR5, OsASR1, Asr1
30823	16831523	Leseberg CH, Li A, Kang H, Duvall M, Mao L.	Genome-wide analysis of the MADS-box gene family in Populus trichocarpa.	Gene	378	84-94	2006		
30824	16843620	Krupa A, Anamika , Srinivasan N.	Genome-wide comparative analyses of domain organisation of repertoires of protein kinases of Arabidopsis thaliana and Oryza sativa.	Gene	380(1)	1-13	2006		
30825	16857943	Erkel C, Kube M, Reinhardt R, Liesack W.	Genome of Rice Cluster I archaea--the key methane producers in the rice rhizosphere.	Science	313(5785)	370-2	2006		
30826	16873616	Normile D.	Agricultural research. Consortium aims to supercharge rice photosynthesis.	Science	313(5786)	423	2006		
30827	16876912	Duff, S.M.G	Phylogenetic and expression analysis of sucrose phosphate synthase isozymes in plants.	J. Plant Physiol.	164	923	2007		
30828	16893175	Smagghe BJ, Kundu S, Hoy JA, Halder P, Weiland TR, Savage A, Venugopal A, Goodman M, Premer S, Hargrove MS.	Role of phenylalanine B10 in plant nonsymbiotic hemoglobins.	Biochemistry	45(32)	9735-45	2006		
30829	16900186	Sasaki T.	Plant breeding: rice in deep water.	Nature	442(7103)	635-6	2006		
30830	16901582	Yasuda, Y.	Effect of low temperature on ethanolic fermentation in rice seedlings.	J. Plant Physiol.	164	1013	2007		
30832	16990520	Vogel G.	Genetically modified crops. Tracing the transatlantic spread of GM rice.	Science	313(5794)	1714	2006		
30833	16996700	Lin J, Chen ZZ, Tian B, Hua YJ.	Evolutionary pathways of an ancient gene recX.	Gene	387(1-2)	15-20	2007		
30834	17000027	Cho, S.H.	Expression of rice acyl-CoA oxidase isoenzymes in response to wounding.	J. Plant Physiol.	164, no. 5	665	2007	ACX2,ACX1,ACX3	OsACX2,OsACX1 ,OsACX3, OsACOX3, ACOX3
30835	17027118	Chong, K.	Transgenic rice plants ectopically expressing AtBAK1 are semi-dwarfed and hypersensitive to 24-epibrassinolide.	J. Plant Physiol.	164, no. 5	655	2007		
30836	17052766	Washio K, Morikawa M.	Common mechanisms regulating expression of rice aleurone genes that contribute to the primary response for gibberellin.	Biochim. Biophys. Acta	1759(10)	478-90	2006	GAMYB,RPBF	OsGAMYB, GAM1, OsGAMyb, Os-MYBGA, Os GAMYB, OsMYBGA, MYBGA, Os2R_MYB15, 2R_MYB15 ,OsDof3, OsDOF3, OsEnS-34, OsDof10, Dof10, OsDof-10, OsDOF1, DOF1, DOF3, OsRPBF, OsDOF7
30837	17077941	Chen, L.	Photosynthetic and biochemical activities in flag leaves of a newly developed superhigh-yield hybrid rice (Oryza sativa) and its parents during the reproductive stage.	Journal of plant research.	120	209	2007		
30838	17139419	Narangajavana, Jarunya 	Development of genotype-independent regeneration system for transformation of rice (Oryza sativa ssp. indica).	Journal of plant research.	120	237	2007		
30839	17182003	Akutsu N, Iijima K, Hinata T, Tauchi H.	Characterization of the plant homolog of Nijmegen breakage syndrome 1: Involvement in DNA repair and recombination.	Biochem. Biophys. Res. Commun.	353(2)	394-8	2007	NBS1	OsNbs1
30840	17187943	Dong H, Deng Y, Chen J, Wang S, Peng S, Dai C, Fang Y, Shao J, Lou Y, Li D.	An exploration of 3'-end processing signals and their tissue distribution in Oryza sativa.	Gene	389	107-13	2006		
30841	17210233	Sakai H, Tanaka T, Itoh T.	Birth and death of genes promoted by transposable elements in Oryza sativa.	Gene	392	59-63	2006		
30842	17213316	Chen, Xingcan	Plants and people from the Early Neolithic to Shang periods in North China.	Proc. Natl. Acad. Sci. U.S.A.	104	1087	2007		
30843	17215059	Kao, C.H.	The participation of hydrogen peroxide in methyl jasmonate-induced NH(4)(+) accumulation in rice leaves.	J. Plant Physiol.	9	1469	2007		
30844	17250976	Numata K, Okada Y, Saito R, Kiyosawa H, Kanai A, Tomita M.	Comparative analysis of cis-encoded antisense RNAs in eukaryotes.	Gene	392	134-41	2006		
30845	17254555	Zhao B, Liang R, Ge L, Li W, Lin H, Ruan K, Jin Y, Xiao H.	Identification of drought-induced microRNAs in rice.	Biochem. Biophys. Res. Commun.	354	585-90	2007	MIR169g	MIR-169g, osa-MIR169g
30846	17306416	Zheng, J.	Heredity, physiology and mapping of a chlorophyll content gene of rice (Oryza sativa L.).	J. Plant Physiol.	165	324	2008	GC	Gc
30847	17350139	Dubery, I.A.	Expression of mitochondrial tatC in Nicotiana tabacum is responsive to benzothiadiazole and salicylic acid.	J. Plant Physiol.	164	1231	2007	TATC	OsTATC, OsTatC, TatC
30848	17404686	Peng, Youliang 	Induced expression of oryzain alpha gene encoding a cysteine proteinase under stress conditions.	Journal of plant research.	120	465	2007	ORYA	ocp*, ocp, OsOCP, OsORYA
30849	17446357	Pennisi E	Plant science. Long-sought plant flowering signal unmasked, again.	Science	316	350-1	2007		
30850	17446396	Cui H,Levesque MP,Vernoux T,Jung JW,Paquette AJ,Gallagher KL,Wang JY,Blilou I,Scheres B,Benfey PN	An evolutionarily conserved mechanism delimiting SHR movement defines a single layer of endodermis in plants.	Science	316	421-5	2007	SCR,SHR1,SHR2,SCR1	OsSCR, OsSCR2, SCR2, OsGRAS-51, OsGRAS51, GRAS-51, GRAS51,OsSHR1, OsGRAS-38, OsGRAS38, GRAS-38, GRAS38, DLN189, OsDLN189, OsSHR, SHR,OsSHR2, OsGRAS-15, OsGRAS15, GRAS-15, GRAS15,OsSCR1, OsSCR, OsGRAS-41, OsGRAS41, GRAS-41, GRAS41
30851	17449639	Ishimaru Y,Kim S,Tsukamoto T,Oki H,Kobayashi T,Watanabe S,Matsuhashi S,Takahashi M,Nakanishi H,Mori S,Nishizawa NK	Mutational reconstructed ferric chelate reductase confers enhanced tolerance in rice to iron deficiency in calcareous soil.	Proc. Natl. Acad. Sci. U.S.A.	104	7373-8.	2007		
30852	17456599	Xu M,Wilderman PR,Peters RJ	Following evolution's lead to a single residue switch for diterpene synthase product outcome.	Proc. Natl. Acad. Sci. U.S.A.	104	7397-401	2007		
30853	17459330	Zulfugarov IS,Ham OK,Mishra SR,Kim JY,Nath K,Koo HY,Kim HS,Moon YH,An G,Lee CH	Dependence of reaction center-type energy-dependent quenching on photosystem II antenna size.	Biochim. Biophys. Acta	1767	773-80	2007		
30854	17460040	Guerinot ML	It's elementary: enhancing Fe3+ reduction improves rice yields.	Proc. Natl. Acad. Sci. U.S.A.	104	7311	2007		
30855	17460628	Ledford H	Elusive flowering signal pruned of mystery at last.	Nature	446	956-7	2007		
30856	17460688	Matsuoka M,Ashikari M	A quantitative trait locus regulating rice grain width.	Nat Genet	39	583-4	2007		
30857	17483453	Naylor RL,Battisti DS,Vimont DJ,Falcon WP,Burke MB	Assessing risks of climate variability and climate change for Indonesian rice agriculture.	Proc. Natl. Acad. Sci. U.S.A.	104	7752-7	2007		
30858	17498837	Ino, T.	UV-induced momilactone B accumulation in rice rhizosphere.	J. Plant Physiol.	9	1548	2007		
30859	17499610	Nagasaka R,Chotimarkorn C,Shafiqul IM,Hori M,Ozaki H,Ushio H	Anti-inflammatory effects of hydroxycinnamic acid derivatives.	Biochem. Biophys. Res. Commun.	358	615-9	2007		
30860	17512990	Ng DW,Wang T,Chandrasekharan MB,Aramayo R,Kertbundit S,Hall TC	Plant SET domain-containing proteins: structure, function and regulation.	Biochim. Biophys. Acta	1769	316-29	2007		
30861	17521606	Liu T,Gu JY,Xu CJ,Gao Y,An CC	Overproduction of OsSLRL2 alters the development of transgenic Arabidopsis plants.	Biochem. Biophys. Res. Commun.	358	983-9	2007	SLR1,SLRL2,SLRL1	slr1-1, slr1, slr, GAI, OsGAI, OsSLR1, Os SLR1, OsRGA1, OsGRAS-18, OsGRAS-18, GRAS-18, GRAS18, SLR-1,OsSLRL2, OsGRAS-30, OsGRAS30, GRAS-30, GRAS30,OsSLRL1, OsGAI, OsSLRL, OsGRAS-1, OsGRAS1, GAI, SLRL, GRAS-1, GRAS1
30862	17540516	Garrocho-Villegas V,Gopalasubramaniam SK,Arredondo-Peter R	Plant hemoglobins: what we know six decades after their discovery.	Gene	398	78-85	2007	Hb1	HB1, OsHB1, GLB1A, rHb1, ORYsa GLB1a, nsHb1, OsNSHB1, hb1, nsHb, OsPgb1.1, Pgb1.1
30863	17558543	Okamoto, Takashi 	Identification of the major protein components of rice egg cells.	Journal of plant research.	120	575	2007		
30864	17563377	Sugio A,Yang B,Zhu T,White FF	Two type III effector genes of Xanthomonas oryzae pv. oryzae control the induction of the host genes OsTFIIAgamma1 and OsTFX1 during bacterial blight of rice.	Proc. Natl. Acad. Sci. U.S.A.	104	10720-5	2007	XA5,TFX1,TFIIAGAMMA1,XA13	xa5, xa-5, Xa5, TFIIAy, OsTFIIAgamma5, TFIIAgamma5, OsTFIIAgamma5/Xa5,OsbZIP73, bZIP73, OsTFX1,OsTFIIAgamma1, OsTFIIAc-1, TFIIAc-1, TFIIAgamma-1,xa13, Xa13, Os8N3, Os-8N3, 8N3, OsSWEET11, SWEET11, OsSWEET11/Xa13, Xa13/Os8N3/SWEET11, Os8N3/Xa13, OsSWEET11/Os8N3, OsSWEET11a, SWEET11a
30865	17566602	Chong, K.	Over-expression of OsUGE-1 altered raffinose level and tolerance to abiotic stress but not morphology in Arabidopsis.	J. Plant Physiol.	164	1384	2007	UGE1	OsUGE-1
30866	17568562	Lee JR,Park SC,Kim MH,Jung JH,Shin MR,Lee DH,Cheon MG,Park Y,Hahm KS,Lee SY	Antifungal activity of rice Pex5p, a receptor for peroxisomal matrix proteins.	Biochem. Biophys. Res. Commun.	359	941-6	2007	PEX5	OsPEX5, OsPex5pL, OsPex5pS, OsPex5L, OsPex5S, OsPex5p
30867	17573530	Nochi T,Takagi H,Yuki Y,Yang L,Masumura T,Mejima M,Nakanishi U,Matsumura A,Uozumi A,Hiroi T,Morita S,Tanaka K,Takaiwa F,Kiyono H	Rice-based mucosal vaccine as a global strategy for cold-chain- and needle-free vaccination.	Proc. Natl. Acad. Sci. U.S.A.	104	10986-91	2007	GLUB1	GluB1, GluB1-A, GluB-1a, GluB-1, OsGluB1, GluB-1b, OsGluB-1b, GLUB1B
30868	17586462	Koo SC,Yoon HW,Kim CY,Moon BC,Cheong YH,Han HJ,Lee SM,Kang KY,Kim MC,Lee SY,Chung WS,Cho MJ	Alternative splicing of the OsBWMK1 gene generates three transcript variants showing differential subcellular localizations.	Biochem. Biophys. Res. Commun.	360	188-93	2007	BWMK1	OsBWMK1, MPK12, MAPK1, OsMAPK1, OsMPK12, OsMPK17-1, MPK17-1, OsBWMK1L, OsBWMK1M, OsBWMK1S, OsMAPK17-1, MAPK17-1, MAPK12, OsMAPK12
30869	17592727	Peng LT,Shi ZY,Li L,Shen GZ,Zhang JL	Ectopic expression of OsLFL1 in rice represses Ehd1 by binding on its promoter.	Biochem. Biophys. Res. Commun.	360	251-6	2007	EF1,LFL1,LFL2	Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,OsLFL1, OsSTA29, STA29,OsLFL2, OsLFL3, LFL3
30870	17595297	Salvi S,Sponza G,Morgante M,Tomes D,Niu X,Fengler KA,Meeley R,Ananiev EV,Svitashev S,Bruggemann E,Li B,Hainey CF,Radovic S,Zaina G,Rafalski JA,Tingey SV,Miao GH,Phillips RL,Tuberosa R	Conserved noncoding genomic sequences associated with a flowering-time quantitative trait locus in maize.	Proc. Natl. Acad. Sci. U.S.A.	104	11376-81	2007		
30871	17599908	Peres A,Churchman ML,Hariharan S,Himanen K,Verkest A,Vandepoele K,Magyar Z,Hatzfeld Y,Van Der Schueren E,Beemster GT,Frankard V,Larkin JC,Inze D,De Veylder L	Novel plant-specific cyclin-dependent kinase inhibitors induced by biotic and abiotic stresses.	J. Biol. Chem.	282	25588-96	2007	EL2,CDKA1;1,CYCD5;3	Orysa; EL2,CDKA1;1,CycD5;3, CYCD5-3, Orysa;CycD5;3, Orysa;CYCD5;3, OsCYCD5;3
30872	17600089	Egan MJ,Wang ZY,Jones MA,Smirnoff N,Talbot NJ	Generation of reactive oxygen species by fungal NADPH oxidases is required for rice blast disease.	Proc. Natl. Acad. Sci. U.S.A.	104	11772-7	2007		
30873	17615239	Liu R,Vitte C,Ma J,Mahama AA,Dhliwayo T,Lee M,Bennetzen JL	A GeneTrek analysis of the maize genome.	Proc. Natl. Acad. Sci. U.S.A.	104	11844-9	2007		
30874	17616579	Rice, Charles M.	Cellular cofactors affecting hepatitis C virus infection and replication.	Proc. Natl. Acad. Sci. U.S.A.	104	12884	2007		
30875	17629420	Mukhopadhyay P,Basak S,Ghosh TC	Nature of selective constraints on synonymous codon usage of rice differs in GC-poor and GC-rich genes.	Gene	400	71-81	2007		
30876	17629421	Yang Z,Wang X,Gu S,Hu Z,Xu H,Xu C	Comparative study of SBP-box gene family in Arabidopsis and rice.	Gene	407	1-11	2008		
30877	17631271	Takahashi-Ando N,Inaba M,Ohsato S,Igawa T,Usami R,Kimura M	Identification of multiple highly similar XIP-type xylanase inhibitor genes in hexaploid wheat.	Biochem. Biophys. Res. Commun.	360	880-4	2007		
30878	17681400	Panda, S.K.	Chromium-mediated oxidative stress and ultrastructural changes in root cells of developing rice seedlings.	J. Plant Physiol.	9	1419	2007		
30879	17686457	Scortecci KC,Lima AF,Carvalho FM,Silva UB,Agnez-Lima LF,Batistuzzo de Medeiros SR	A characterization of a MutM/Fpg ortholog in sugarcane--A monocot plant.	Biochem. Biophys. Res. Commun.	361	1054-60	2007	MUTM2,MUTM1	MutM2, Fpg,MutM1, Fpg
30880	17689888	Riese M,Hohmann S,Saedler H,Munster T,Huijser P	Comparative analysis of the SBP-box gene families in P. patens and seed plants.	Gene	401	28-37	2007		
30881	17698298	Han Y,Sun FJ,Rosales-Mendoza S,Korban SS	Three orthologs in rice, Arabidopsis, and Populus encoding starch branching enzymes (SBEs) are different from other SBE gene families in plants.	Gene	401	123-30	2007		
30882	17699623	Bai MY,Zhang LY,Gampala SS,Zhu SW,Song WY,Chong K,Wang ZY	Functions of OsBZR1 and 14-3-3 proteins in brassinosteroid signaling in rice.	Proc. Natl. Acad. Sci. U.S.A.	104	13839-44	2007	BZR3,GF14C,BZR1,BZR2,BZR4	OsBZR3, OsBES1-5, BES1-5,GF14c, OsGF14c, 14-3-3c,OsBZR1, Os BZR1, OsBES1-6, BES1-6,OsBZR2, OsBES1-2, BES1-2,OsBZR4, OsBES1-4, BES1-4
30883	17721507	Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruy?re C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro F, Anthouard V, Vico V, Del Fabbro C, Alaux M, Di Gaspero G, Dumas V, Felice N, Paillard S, Juman I, Moroldo M, Scalabrin S, Canaguier A, Le Clainche I, Malacrida G, Durand E, Pesole G, Laucou V, Chatelet P, Merdinoglu D, Delledonne M, Pezzotti M, Lecharny A, Scarpelli C, Artiguenave F, P? ME, Valle G, Morgante M, Caboche M, Adam-Blondon AF, Weissenbach J, Qu?tier F, Wincker P; French-Italian Public Consortium for Grapevine Genome Characterization.	The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.	Nature	449	463-7	2007		
30884	17728010	Itoh, K.	Suppression and promotion of growth by ethylene in rice seedlings depends on ambient humidity.	J. Plant Physiol.	164	1683	2007		
30885	17826739	Seong ES,Guo J,Kim YH,Cho JH,Lim CK,Hyun Hur J,Wang MH	Regulations of marker genes involved in biotic and abiotic stress by overexpression of the AtNDPK2 gene in rice.	Biochem. Biophys. Res. Commun.	363	126-32	2007	APX1,SODCC2,APX2,SODCC1,NH1,PR4	OsAPX1, APXa, OsAPXa, OsAPx01, OsAPx1, OSAPX1, APx1, cAPX, APX2, cAPXa, OscAPXa,Cu/Zn-SOD, Cu/Zn- SOD, OsCu-ZnSOD2, Cu-ZnSOD2, OsSODB, OsSOD3, SodCc2, Os SodCc2, sodB, OsSodB, RSODB, OssodCc1, OsCSD1.1, CSD1.1, OsCDS1, OsSOD3-CU/Zn, SOD3-CU/Zn, CuZnSOD2, Cu/ZnSOD2, OsCu/ZnSOD2, OsCSD1, CSD1, CuZnSOD1, OsCuZnSOD2, OsCSD4, CSD4, OsCSD3, CSD3, Cu/Zn-SOD3,OsAPX2, OsAPx02, APXb, OsAPx2, OSAPX2, APx2, cAPX, OsAPX1, APX1,sodCc1, SODCC.1, sodA, RSODA, OsSOD1, OsCSD2, OsSodA, SodCc2, OsSODA1, SODCc1-Cu/Zn, OsCu/Zn-SOD2, Cu/Zn-SOD2, OsCSD1.2, CSD1.2, OsSODCc1-Cu/Zn, SODCc1-Cu/Zn, CuZnSOD1, Cu/ZnSOD1, OsCu/ZnSOD1, OsCSD4, CDS4, CuZnSOD4, OsCuZnSOD1, OsCSD1, CSD1, OsSOD2,OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2, DLN5, OsDLN5,  OsBTBA1, BTBA1,OsPR4, OsPR4a, PR4a, OsPR-4
30886	17872948	Shimura K,Okada A,Okada K,Jikumaru Y,Ko KW,Toyomasu T,Sassa T,Hasegawa M,Kodama O,Shibuya N,Koga J,Nojiri H,Yamane H	Identification of a biosynthetic gene cluster in rice for momilactones.	J. Biol. Chem.	282	34013-8	2007	MAS,CYP99A2,KS4,CYP99A3	OsMAS, MAS1, OsMAS1, OsMAS/SDR110C-MS1, SDR110C-MS1, OsSDR110C-MS1, OsMS1, MS1,OsCYP99A2,OsKS4, KS4, KSL4, OsKSL4, DTS2, OsDTS2, OsTPS16, TPS16, TPS8, OsTPS8,OsCYP99A3
30887	17881564	Karaba A,Dixit S,Greco R,Aharoni A,Trijatmiko KR,Marsch-Martinez N,Krishnan A,Nataraja KN,Udayakumar M,Pereira A	Improvement of water use efficiency in rice by expression of HARDY, an Arabidopsis drought and salt tolerance gene.	Proc. Natl. Acad. Sci. U.S.A.	104	15270-5	2007		
30888	17897620	Ochiai N,Tokai T,Nishiuchi T,Takahashi-Ando N,Fujimura M,Kimura M	Involvement of the osmosensor histidine kinase and osmotic stress-activated protein kinases in the regulation of secondary metabolism in Fusarium graminearum.	Biochem. Biophys. Res. Commun.	363	639-44	2007		
30889	17898767	Zong Y,Chen Z,Innes JB,Chen C,Wang Z,Wang H	Fire and flood management of coastal swamp enabled first rice paddy cultivation in east China.	Nature	449	459-62	2007		
30890	17904519	Ichida H,Maeda K,Ichise H,Matsuyama T,Abe T,Yoneyama K,Koba T	In silico restriction landmark genome scanning analysis of Xanthomonas oryzae pathovar oryzae MAFF 311018.	Biochem. Biophys. Res. Commun.	363	852-6	2007		
30891	17922660	Yao Y,Du Y,Jiang L,Liu JY	Interaction between ACC synthase 1 and 14-3-3 proteins in rice: a new insight.	Biochemistry (Mosc)	72	1003-7	2007		
30892	17923480	Garvey GS,McCormick SP,Rayment I	Structural and functional characterization of the TRI101 trichothecene 3-O-acetyltransferase from Fusarium sporotrichioides and Fusarium graminearum: kinetic insights to combating Fusarium head blight.	J. Biol. Chem.	283	1660-9	2008		
30893	17923667	Zhang Q	Strategies for developing Green Super Rice.	Proc. Natl. Acad. Sci. U.S.A.	104	16402-9	2007		
30894	17932040	Katsuyama Y,Matsuzawa M,Funa N,Horinouchi S	In vitro synthesis of curcuminoids by type III polyketide synthase from Oryza sativa.	J. Biol. Chem.	282	37702-9	2007		
30895	17950698	Hernandez Torres J,Maldonado MA,Chomilier J	Tandem duplications of a degenerated GTP-binding domain at the origin of GTPase receptors Toc159 and thylakoidal SRP.	Biochem. Biophys. Res. Commun.	364	325-31	2007		
30896	17961759	Nemoto T,Okada A,Okada K,Shibuya N,Toyomasu T,Nojiri H,Yamane H	Promoter analysis of the rice stemar-13-ene synthase gene OsDTC2, which is involved in the biosynthesis of the phytoalexin oryzalexin S.	Biochim. Biophys. Acta	1769	678-83	2007	KS8	OsKS8, KS8, KSL8, OsKSL8, DTC2, OsDTC2, OsDTC2/OsKS8, OsTPS32, TPS17, OsTPS17, KSL11, OsKSL11
30897	17961936	Suzuki M,Tanaka K,Kuwano M,Yoshida KT	Expression pattern of inositol phosphate-related enzymes in rice (Oryza sativa L.): implications for the phytic acid biosynthetic pathway.	Gene	405	55-64	2007	ITPK1,_,ITPK5,ITPK4,DSM3,_,_,INO1,ITPK6,ITPK3,_,INO2	OsITPK1, OsITP5/6K-1, ITP5/6K-1, OsITL2,OsIPK1, IPK1,OsITPK5, OsITP5/6K-5, OsITL3,OsITPK4, OsITP5/6K-4, ITP5/6K-4,OsITPK2, ITPK2, OsDSM3, OsITP5/6K-2, OsITL1,OsIMP-2, IMP-2,OsIPK2, IPK2, IP6K,OsINO1, MIPS, IPS, RINO1, OsINO1-1, OsRINO1, OsMIPS1, MIPS1,OsITPK6, OsITP5/6K-6, ITP5/6K-6,OsITPK3, OsITP5/6K-3, ITP5/6K-3, OsIPK1,OsIMP-1, IMP-1, OsIMP, IMP,OsINO2, RINO2, OsINO1-2
30898	17988639	Yang L,Kajiura H,Suzuki K,Hirose S,Fujiyama K,Takaiwa F	Generation of a transgenic rice seed-based edible vaccine against house dust mite allergy.	Biochem. Biophys. Res. Commun.	365	334-9	2008	GLUB1	GluB1, GluB1-A, GluB-1a, GluB-1, OsGluB1, GluB-1b, OsGluB-1b, GLUB1B
30899	18024592	Nelson EJ,Chowdhury A,Harris JB,Begum YA,Chowdhury F,Khan AI,Larocque RC,Bishop AL,Ryan ET,Camilli A,Qadri F,Calderwood SB	Complexity of rice-water stool from patients with Vibrio cholerae plays a role in the transmission of infectious diarrhea.	Proc. Natl. Acad. Sci. U.S.A.	104	19091-6	2007		
30900	18025467	Kobayashi T,Ogo Y,Itai RN,Nakanishi H,Takahashi M,Mori S,Nishizawa NK	The transcription factor IDEF1 regulates the response to and tolerance of iron deficiency in plants.	Proc. Natl. Acad. Sci. U.S.A.	104	19150-5	2007	IRT1,ABI3,NAS2,IRO2	OsIRT1, ZIP10, OsZIP10, OsZIP12, ZIP12,OsLFL2, LFL2, OsIDEF1, IDEF1, OsABI3,OsNAS2, OsNAS1,OsIRO2, OsbHLH056, bHLH056, bHLH56, OsbHLH56
30901	18042708	Zhou F,Pu Y,Wei T,Liu H,Deng W,Wei C,Ding B,Omura T,Li Y	The P2 capsid protein of the nonenveloped rice dwarf phytoreovirus induces membrane fusion in insect host cells.	Proc. Natl. Acad. Sci. U.S.A.	104	19547-52	2007		
30902	18042724	Miya A,Albert P,Shinya T,Desaki Y,Ichimura K,Shirasu K,Narusaka Y,Kawakami N,Kaku H,Shibuya N	CERK1, a LysM receptor kinase, is essential for chitin elicitor signaling in Arabidopsis.	Proc. Natl. Acad. Sci. U.S.A.	104	19613-8	2007	CEBIP	CEBiP, Os-LYP1, LYP1, OsCEBiP
30903	18079367	Rensing SA, Lang D, Zimmer AD, Terry A, Salamov A, Shapiro H, Nishiyama T, Perroud PF, Lindquist EA, Kamisugi Y, Tanahashi T, Sakakibara K, Fujita T, Oishi K, Shin-I T, Kuroki Y, Toyoda A, Suzuki Y, Hashimoto S, Yamaguchi K, Sugano S, Kohara Y, Fujiyama A, Anterola A, Aoki S, Ashton N, Barbazuk WB, Barker E, Bennetzen JL, Blankenship R, Cho SH, Dutcher SK, Estelle M, Fawcett JA, Gundlach H, Hanada K, Heyl A, Hicks KA, Hughes J, Lohr M, Mayer K, Melkozernov A, Murata T, Nelson DR, Pils B, Prigge M, Reiss B, Renner T, Rombauts S, Rushton PJ, Sanderfoot A, Schween G, Shiu SH, Stueber K, Theodoulou FL, Tu H, Van de Peer Y, Verrier PJ, Waters E, Wood A, Yang L, Cove D, Cuming AC, Hasebe M, Lucas S, Mishler BD, Reski R, Grigoriev IV, Quatrano RS, Boore JL.	The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.	Science	319	64-9	2008		
30904	18154307	Sawano M,Yamamoto H,Ogasahara K,Kidokoro S,Katoh S,Ohnuma T,Katoh E,Yokoyama S,Yutani K	Thermodynamic basis for the stabilities of three CutA1s from Pyrococcus horikoshii,Thermus thermophilus, and Oryza sativa, with unusually high denaturation temperatures.	Biochemistry	47	721-30	2008	CUTA1	OsCutA1
30905	18155857	Liu Q,Zhu H	Molecular evolution of the MLO gene family in Oryza sativa and their functional divergence.	Gene	409	1-10	2008	MLO_,MLO_,MLO_,MLO_,MLO_,MLO_,MLO_,MLO_,MLO_,MLO_,MLO_,MLO_	OsMLO2, OsMLO3, OsMlo2, MLO2, Mlo2, Mlo, MLO3,OsMLO4, OsMLO1, MLO1,OsMLO7, MLO7,OsMLO4, MLO4,OsMLO5, MLO5,OsMLO8, MLO8,OsMLO9, MLO9,OsMLO10, MLO10,OsMLO12, MLO12,OsMLO11, MLO11,OsMLO5, OsMLO2,OsMLO6, OsMLO1, OsMlo1, Mlo, OsMlo-1, Mlo1, MLO6
30906	18287029	Tsai J,Lee JT,Wang W,Zhang J,Cho H,Mamo S,Bremer R,Gillette S,Kong J,Haass NK,Sproesser K,Li L,Smalley KS,Fong D,Zhu YL,Marimuthu A,Nguyen H,Lam B,Liu J,Cheung I,Rice J,Suzuki Y,Luu C,Settachatgul C,Shellooe R,Cantwell J,Kim SH,Schlessinger J,Zhang KY,West BL,Powell B,Habets G,Zhang C,Ibrahim PN,Hirth P,Artis DR,Herlyn M,Bollag G	Discovery of a selective inhibitor of oncogenic B-Raf kinase with potent antimelanoma activity.	Proc. Natl. Acad. Sci. U.S.A.	105	3041	2008		
30907	18291601	Xu Z,Ramakrishna W	Retrotransposon insertion polymorphisms in six rice genes and their evolutionary history.	Gene	412	50-8	2008		
30908	18291602	Nayidu NK,Wang L,Xie W,Zhang C,Fan C,Lian X,Zhang Q,Xiong L	Comprehensive sequence and expression profile analysis of PEX11 gene family in rice.	Gene	412	59-70	2008	PEX11-2,PEX11-4,PEX11-5,PEX11-3,PEX11-1	OsPEX11-2, OsPEX11-5,OsPEX11-4,OsPEX11-5,OsPEX11-3, OsPEX11 ,OsPEX11-1, OsPEX11
30909	18303117	Batista R,Saibo N,Lourenco T,Oliveira MM	Microarray analyses reveal that plant mutagenesis may induce more transcriptomic changes than transgene insertion.	Proc. Natl. Acad. Sci. U.S.A.	105	3640-5	2008		
30910	18305171	Rao NN,Prasad K,Kumar PR,Vijayraghavan U	Distinct regulatory role for RFL, the rice LFY homolog, in determining flowering time and plant architecture.	Proc. Natl. Acad. Sci. U.S.A.	105	3646-51	2008	RFL,MADS50	RFL, OSL, FL, APO2, APO2/RFL, SSC, SSC/RFL/APO2, OsRFL, OsFL, OsAPO2, OsSSC,OsMADS50, AGL20, SOC1, OsSOC1, RMADS208, OsSOC1/ OsMADS50/DTH3, DTH3, OsDTH3
30911	18353984	Lu C,Jeong DH,Kulkarni K,Pillay M,Nobuta K,German R,Thatcher SR,Maher C,Zhang L,Ware D,Liu B,Cao X,Meyers BC,Green PJ	Genome-wide analysis for discovery of rice microRNAs reveals natural antisense microRNAs (nat-miRNAs).	Proc. Natl. Acad. Sci. U.S.A.	105	4951-6	2008	MIR1432,MIR1427,MIR810B,DCL1	miR1432, osa-miR1432, osa-miR1432-5p, osa-MIR1432,miR1427, osa-miR1427, osa-MIR1427,miR810b, osa-miR810b, osa-MIR810b, Osa-miR810b.2, miR810-3p, osa-miR810b.1, osa-miR810b.2,Dcl1, OsDCL1, osDCL1, Os-DCL1, OsDCL1a, DCL1a
30912	18362346	Gilbert M,Xiao X,Pfeiffer DU,Epprecht M,Boles S,Czarnecki C,Chaitaweesub P,Kalpravidh W,Minh PQ,Otte MJ,Martin V,Slingenbergh J	Mapping H5N1 highly pathogenic avian influenza risk in Southeast Asia.	Proc. Natl. Acad. Sci. U.S.A.	105	4769-74	2008		
30913	16208503	Steele KA, Price AH, Shashidhar HE, Witcombe JR.	Marker-assisted selection to introgress rice QTLs controlling root traits into an Indian upland rice variety.	Theor. Appl. Genet.	112(2)	208-21	2006		
30914	16311724	Kota R, Spielmeyer W, McIntosh RA, Lagudah ES.	Fine genetic mapping fails to dissociate durable stem rust resistance gene Sr2 from pseudo-black chaff in common wheat (Triticum aestivum L.).	Theor. Appl. Genet.	112(3)	492-9	2006		
30915	16331476	Tian F, Li DJ, Fu Q, Zhu ZF, Fu YC, Wang XK, Sun CQ.	Construction of introgression lines carrying wild rice (Oryza rufipogon Griff.) segments in cultivated rice (Oryza sativa L.) background and characterization of introgressed segments associated with yield-related traits.	Theor. Appl. Genet.	112(3)	570-80	2006		
30916	16365756	Kao FI, Cheng YY, Chow TY, Chen HH, Liu SM, Cheng CH, Chung MC.	An integrated map of Oryza sativa L. chromosome 5.	Theor. Appl. Genet.	112(5)	891-902	2006		
30917	16395568	Bethel CM, Sciara EB, Estill JC, Bowers JE, Hanna W, Paterson AH.	A framework linkage map of bermudagrass (Cynodon dactylon x transvaalensis) based on single-dose restriction fragments.	Theor. Appl. Genet.	112(4)	727-37	2006		
30918	16432737	Yoon DB, Kang KH, Kim HJ, Ju HG, Kwon SJ, Suh JP, Jeong OY, Ahn SN.	Mapping quantitative trait loci for yield components and morphological traits in an advanced backcross population between Oryza grandiglumis and the O. sativa japonica cultivar Hwaseongbyeo.	Theor. Appl. Genet.	112(6)	1052-62	2006		
30919	16432738	Valarik M, Linkiewicz AM, Dubcovsky J.	A microcolinearity study at the earliness per se gene Eps-A(m)1 region reveals an ancient duplication that preceded the wheat-rice divergence.	Theor. Appl. Genet.	112(5)	945-57	2006	NDK3	Ndk3
30920	16456656	Lu HJ, Fellers JP, Friesen TL, Meinhardt SW, Faris JD.	Genomic analysis and marker development for the Tsn1 locus in wheat using bin-mapped ESTs and flanking BAC contigs.	Theor. Appl. Genet.	112(6)	1132-42	2006		
30921	16463157	Calderini O, Chang SB, de Jong H, Busti A, Paolocci F, Arcioni S, de Vries SC, Abma-Henkens MH, Lankhorst RM, Donnison IS, Pupilli F.	Molecular cytogenetics and DNA sequence analysis of an apomixis-linked BAC in Paspalum simplex reveal a non pericentromere location and partial microcolinearity with rice.	Theor. Appl. Genet.	112(6)	1179-91	2006		
30922	16477428	Wan XY, Wan JM, Jiang L, Wang JK, Zhai HQ, Weng JF, Wang HL, Lei CL, Wang JL, Zhang X, Cheng ZJ, Guo XP.	QTL analysis for rice grain length and fine mapping of an identified QTL with stable and major effects.	Theor. Appl. Genet.	112(7)	1258-70	2006	qGL-3a,qGL-3(t) (gl3)	qGL-3a,qGL-3(t) (gl3)
30923	16496119	Ueda A, Kathiresan A, Bennett J, Takabe T.	Comparative transcriptome analyses of barley and rice under salt stress.	Theor. Appl. Genet.	112(7)	1286-94	2006		
30924	16501940	Pozzi, C.	Candidate genes for barley mutants involved in plant architecture: an in silico approach.	Theor. Appl. Genet.	112, no. 6	1073	2006	FZP	fzp*, fzp, OsBD1, BD1, OsERF#078, OsERF078, OsERF78, ERF78, AP2/EREBP#133, AP2/EREBP133, BFL1, SGDP7, OsSGDP7
30925	16505997	Upadhyaya NM, Zhu QH, Zhou XR, Eamens AL, Hoque MS, Ramm K, Shivakkumar R, Smith KF, Pan ST, Li S, Peng K, Kim SJ, Dennis ES.	Dissociation (Ds) constructs, mapped Ds launch pads and a transiently-expressed transposase system suitable for localized insertional mutagenesis in rice.	Theor. Appl. Genet.	112(7)	1326-41	2006		
30926	16783595	Shirasawa K, Shiokai S, Yamaguchi M, Kishitani S, Nishio T.	Dot-blot-SNP analysis for practical plant breeding and cultivar identification in rice.	Theor. Appl. Genet.	113(1)	147-55	2006		
30927	16791687	Dong ZY, Wang YM, Zhang ZJ, Shen Y, Lin XY, Ou XF, Han FP, Liu B.	Extent and pattern of DNA methylation alteration in rice lines derived from introgressive hybridization of rice and Zizania latifolia Griseb.	Theor. Appl. Genet.	113(2)	196-205	2006		
30928	16832648	Deng Y, Zhu X, Shen Y, He Z.	Genetic characterization and fine mapping of the blast resistance locus Pigm(t) tightly linked to Pi2 and Pi9 in a broad-spectrum resistant Chinese variety.	Theor. Appl. Genet.	113(4)	705-13	2006	PIZ,PI9,PIGM,PI26	Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2,Pi9(t), Pi9(t)*, Pi9, Pi-9(t),Pigm(t), Pi-gm(t), Pigm,Pi26(t), Pi26
30929	16838138	Nguyen TT, Koizumi S, La TN, Zenbayashi KS, Ashizawa T, Yasuda N, Imazaki I, Miyasaka A.	Pi35(t), a new gene conferring partial resistance to leaf blast in the rice cultivar Hokkai 188.	Theor. Appl. Genet.	113(4)	697-704	2006	PI35,PISH,PI27	Pi35(t),Pi sh, Pish, Pi-sh, Pish(t),Pi27, Pi27(t), Pi-27(t)
30930	16847662	Brown PJ, Klein PE, Bortiri E, Acharya CB, Rooney WL, Kresovich S.	Inheritance of inflorescence architecture in sorghum.	Theor. Appl. Genet.	113(5)	931-42	2006		
30931	16850313	Bao JS, Corke H, Sun M.	Nucleotide diversity in starch synthase IIa and validation of single nucleotide polymorphisms in relation to starch gelatinization temperature and other physicochemical properties in rice (Oryza sativa L.).	Theor. Appl. Genet.	113(7)	1171-83	2006	ALK,WX1,SBE3	alk, SSII-3, OsSSIIa, OsSSII-3, SSIIa, SSS2A, OsSSIIaChr6, SS2a,wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx,SBEIII*, SBEIII, Sbe3, RBE3, QEIIa, QEIIA, BEIIb, BEIIB, SBEIIb, OsBEIIb, sbe3, SBE III, OsSBEIIb, SBEIIb
30932	16850315	Xie X, Song MH, Jin F, Ahn SN, Suh JP, Hwang HG, McCouch SR.	Fine mapping of a grain weight quantitative trait locus on rice chromosome 8 using near-isogenic lines derived from a cross between Oryza sativa and Oryza rufipogon.	Theor. Appl. Genet.	113(5)	885-94	2006		
30933	16874488	MacMillan K, Emrich K, Piepho HP, Mullins CE, Price AH.	Assessing the importance of genotype x environment interaction for root traits in rice using a mapping population. I: a soil-filled box screen.	Theor. Appl. Genet.	113(6)	977-86	2006		
30934	16896706	Brueggeman R, Drader T, Kleinhofs A.	The barley serine/threonine kinase gene Rpg1 providing resistance to stem rust belongs to a gene family with five other members encoding kinase domains.	Theor. Appl. Genet.	113(6)	1147-58	2006		
30935	16896711	Bossolini E, Krattinger SG, Keller B.	Development of simple sequence repeat markers specific for the Lr34 resistance region of wheat using sequence information from rice and Aegilops tauschii.	Theor. Appl. Genet.	113(6)	1049-62	2006		
30936	16896715	MacMillan K, Emrich K, Piepho HP, Mullins CE, Price AH.	Assessing the importance of genotype x environment interaction for root traits in rice using a mapping population II: conventional QTL analysis.	Theor. Appl. Genet.	113(5)	953-64	2006		
30937	16964521	Bao JS, Corke H, Sun M.	Microsatellites, single nucleotide polymorphisms and a sequence tagged site in starch-synthesizing genes in relation to starch physicochemical properties in nonwaxy rice (Oryza sativa L.).	Theor. Appl. Genet.	113(7)	1185-96	2006	WX1,SBE1,SSI,SBE3	wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx,sbe1, Rbe1. Sbe1, sbe1*(QEI), RBE1, BEI, SBE I, QEI, OsBEI, BE1, OsSBE1, OsSBEI, SBEI,OsSSI, SSS 1, SSS1, SS1, OsSS1, SSSI, OsSSSI,SBEIII*, SBEIII, Sbe3, RBE3, QEIIa, QEIIA, BEIIb, BEIIB, SBEIIb, OsBEIIb, sbe3, SBE III, OsSBEIIb, SBEIIb
30938	17136372	Thomson MJ, Septiningsih EM, Suwardjo F, Santoso TJ, Silitonga TS, McCouch SR.	Genetic diversity analysis of traditional and improved Indonesian rice (Oryza sativa L.) germplasm using microsatellite markers.	Theor. Appl. Genet.	114(3)	559-68	2007		
30939	17146664	Li D, Chen L, Jiang L, Zhu S, Zhao Z, Liu S, Su N, Zhai H, Ikehashi H, Wan J.	Fine mapping of S32(t), a new gene causing hybrid embryo sac sterility in a Chinese landrace rice (Oryza sativa L.).	Theor. Appl. Genet.	114(3)	515-24	2007	S31,S32	S31-gi,S31-un,S31-n,S31(t),S32-kn , S32-ti ,S32-n,S32(t)(=qSS2) 
30940	17177062	Sano, Yoshio 	Genetic variations in rice in vitro cultures at the EPSPs-RPS20 region.	Theor. Appl. Genet.	114	705	2007		
30941	17219208	Graner, Andreas 	A 1,000-loci transcript map of the barley genome: new anchoring points for integrative grass genomics.	Theor. Appl. Genet.	114	823	2007		
30942	17219209	Liu QL, Xu XH, Ren XL, Fu HW, Wu DX, Shu QY.	Generation and characterization of low phytic acid germplasm in rice (Oryza sativa L.).	Theor. Appl. Genet.	114	803-14	2007	_,LPA1	OsMIK, LPA,Lpa1, OsLpa1, OsLpa1.1, OsLpa1.2, OsLpa1.3, Oslpa1, OsLpa1-3.1, OsLpa1-3.2, OsLpa1-3.3
30943	17279367	Li W, Jiang L, Zhou S, Wang C, Liu L, Chen L, Ikehashi H, Wan J.	Fine mapping of pss1, a pollen semi-sterile gene in rice (Oryza sativa L.).	Theor. Appl. Genet.	114(5)	939-46	2007	PSS1	pss1, OsPSS1
30944	17287976	Jing W, Zhang W, Jiang L, Chen L, Zhai H, Wan J.	Two novel loci for pollen sterility in hybrids between the weedy strain Ludao and the Japonica variety Akihikari of rice (Oryza sativa L.).	Theor. Appl. Genet.	114	915-925	2007	S33,S34,S33	S33(t),S34(t) ,
30945	17356864	Hayashi, Takeshi 	Bayesian association mapping of multiple quantitative trait loci and its application to the analysis of genetic variation among Oryza sativa L. germplasms.	Theor. Appl. Genet.	114	1437	2007		
30946	17375281	Komatsuda, T. 	Analysis of the barley chromosome 2 region containing the six-rowed spike gene vrs1 reveals a breakdown of rice-barley micro collinearity by a transposition.	Theor. Appl. Genet.	114	1357	2007		
30947	17406851	Uga Y, Nonoue Y, Liang ZW, Lin HX, Yamamoto S, Yamanouchi U, Yano M.	Accumulation of additive effects generates a strong photoperiod sensitivity in the extremely late-heading rice cultivar 'Nona Bokra'.	Theor. Appl. Genet.	114	1457-66	2007	HD6,qHD13,HD5,HD2,HD9,SE1,HD3A,HD4,HD9	Hd6(t)*, OSCKA2, OsCKA2, CKA2, OsCKA2-1, CKA2-1, Hd6/CK2alpha, CK2alpha,Hd13,Hd5(t)*, Hd5, qHD5, HAP3H, OsHAP3H, NF-YB, CBF-A, DTH8 , qHD5(t)*, Ghd8, Ghd8/DTH8, Lhd1, NF-YB11, OsNF-YB11, NFYB11, LH8, DTH8/Ghd8, RH8, DTH8/Ghd8/LHD1, CAR8, DTH8/Ghd8/ OsHAP3H, EF8, OsEF8,Hd2(t), Hd2, qHD2(t), OsPRR37, Os-PRR37, PRR37, Prr4, OsPRR4, DTH7, Os DTH7, OsCCT28, CCT28, Ghd7.1, PRR37/Hd2, EH7-2, EH7-2/Hd2, Hd2/PRR37, PRR37-1a, PRR37-1b, PRR37-1c, PRR37-2a, PRR37- 2, HD7.2,Hd9, qHd9,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, OsHd1,  Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,Hd4(t), qHD4(t), qHD4,Hd9(t), qHD9(t)
30948	17479243	Wang J,Wan X,Li H,Pfeiffer WH,Crouch J,Wan J	Application of identified QTL-marker associations in rice quality improvement through a design-breeding approach.	Theor. Appl. Genet.	115	87-100	2007		
30949	17486310	Matsubara K,Ando T,Mizubayashi T,Ito S,Yano M	Identification and linkage mapping of complementary recessive genes causing hybrid breakdown in an intraspecific rice cross.	Theor. Appl. Genet.	115	179-86	2007	HBD3,HBD2	hbd3,OsCKI1, CKI, hbd2, CKI1, LTG1, OsCKI1/LTRPK1, LTRPK1, OsLTRPK1, LSES1, OsLSES1
30950	17487470	Yamamoto E,Takashi T,Morinaka Y,Lin S,Kitano H,Matsuoka M,Ashikari M	Interaction of two recessive genes, hbd2 and hbd3, induces hybrid breakdown in rice.	Theor. Appl. Genet.	115	187-94	2007	HBD3,HBD2	hbd3,OsCKI1, CKI, hbd2, CKI1, LTG1, OsCKI1/LTRPK1, LTRPK1, OsLTRPK1, LSES1, OsLSES1
30951	17492423	Hori Y,Fujimoto R,Sato Y,Nishio T	A novel wx mutation caused by insertion of a retrotransposon-like sequence in a glutinous cultivar of rice (Oryza sativa).	Theor. Appl. Genet.	115	217-24	2007	WX1	wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx
30952	17522835	Lohithaswa HC,Feltus FA,Singh HP,Bacon CD,Bailey CD,Paterson AH	Leveraging the rice genome sequence for monocot comparative and translational genomics.	Theor. Appl. Genet.	115	237-43	2007		
30953	17534593	Saski C,Lee SB,Fjellheim S,Guda C,Jansen RK,Luo H,Tomkins J,Rognli OA,Daniell H,Clarke JL	Complete chloroplast genome sequences of Hordeum vulgare, Sorghum bicolor and Agrostis stolonifera, and comparative analyses with other grass genomes.	Theor. Appl. Genet.	115	571-90	2007		
30954	17534594	Gao YM,Zhu J	Mapping QTLs with digenic epistasis under multiple environments and predicting heterosis based on QTL effects.	Theor. Appl. Genet.	115	325-33	2007		
30955	17551710	Wang J,Raman H,Zhou M,Ryan PR,Delhaize E,Hebb DM,Coombes N,Mendham N	High-resolution mapping of the Alp locus and identification of a candidate gene HvMATE controlling aluminium tolerance in barley (Hordeum vulgare L.).	Theor. Appl. Genet.	115	265-76	2007		
30956	17571251	Schnurbusch T,Collins NC,Eastwood RF,Sutton T,Jefferies SP,Langridge P	Fine mapping and targeted SNP survey using rice-wheat gene colinearity in the region of the Bo1 boron toxicity tolerance locus of bread wheat.	Theor. Appl. Genet.	115	451-61	2007		
30957	17585380	Park DS,Lee SK,Lee JH,Song MY,Song SY,Kwak DY,Yeo US,Jeon NS,Park SK,Yi G,Song YC,Nam MH,Ku YC,Jeon JS	The identification of candidate rice genes that confer resistance to the brown planthopper (Nilaparvata lugens) through representational difference analysis.	Theor. Appl. Genet.	115	537-47	2007	BPH1	Bph1
30958	17593343	Wang LQ,Liu WJ,Xu Y,He YQ,Luo LJ,Xing YZ,Xu CG,Zhang Q	Genetic basis of 17 traits and viscosity parameters characterizing the eating and cooking quality of rice grain.	Theor. Appl. Genet.	115	463-76	2007	ALK,WX1	alk, SSII-3, OsSSIIa, OsSSII-3, SSIIa, SSS2A, OsSSIIaChr6, SS2a,wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx
30959	17619853	Srinivasachary,Dida MM,Gale MD,Devos KM	Comparative analyses reveal high levels of conserved colinearity between the finger millet and rice genomes.	Theor. Appl. Genet.	115	489-99	2007		
30960	17622509	Yuan QH,Shi L,Wang F,Cao B,Qian Q,Lei XM,Liao YL,Liu WG,Cheng L,Jia SR	Investigation of rice transgene flow in compass sectors by using male sterile line as a pollen detector.	Theor. Appl. Genet.	115	549-60	2007	BAR	bar
30961	17657469	Cao Y,Duan L,Li H,Sun X,Zhao Y,Xu C,Li X,Wang S	Functional analysis of Xa3/Xa26 family members in rice resistance to Xanthomonas oryzae pv. oryzae.	Theor. Appl. Genet.	115	887-95	2007	MRKa,MRKd,MRKc,XA3	MRKa, RKa, TRKa,MRKd, RKd, TRKd,MRKc, RKc, TRKc,Xa-3, Xa3 (Xa4b, Xa6, Xa9, Xa w), Xa3, Xaw, Xa6, Xa9, Xa4-b, XA26, Xa26(t), Xa26(t)*, Xa26, RKb, MRKb, MRKB, TRKb, Xa3/Xa26
30962	17657470	Neeraja CN,Maghirang-Rodriguez R,Pamplona A,Heuer S,Collard BC,Septiningsih EM,Vergara G,Sanchez D,Xu K,Ismail AM,Mackill DJ	A marker-assisted backcross approach for developing submergence-tolerant rice cultivars.	Theor. Appl. Genet.	115	767-76	2007	SUB1	Sub1, Sub1(Sub1A,Sub1B,Sub1C), Sub1A, Sub1B, Sub1C, Sub1
30963	17657471	Kuroki M,Saito K,Matsuba S,Yokogami N,Shimizu H,Ando I,Sato Y	A quantitative trait locus for cold tolerance at the booting stage on rice chromosome 8.	Theor. Appl. Genet.	115	593-600	2007	qCTB8	qCTB8
30964	17823787	Shirasawa K,Maeda H,Monna L,Kishitani S,Nishio T	The number of genes having different alleles between rice cultivars estimated by SNP analysis.	Theor. Appl. Genet.	115	1067-74	2007		
30965	17846741	Wang H,Zhang H,Gao F,Li J,Li Z	Comparison of gene expression between upland and lowland rice cultivars under water stress using cDNA microarray.	Theor. Appl. Genet.	115	1109-26	2007		
30966	17851647	Yan CJ,Zhou JH,Yan S,Chen F,Yeboah M,Tang SZ,Liang GH,Gu MH	Identification and characterization of a major QTL responsible for erect panicle trait in japonica rice (Oryza sativa L.).	Theor. Appl. Genet.	115	1093-1100	2007	qPE9-2,DEP1	qPE9-2,OsDEP1, EP, qPE9-1, DN1, DEP1/DN1/qPE9-1, qNGR9, qDEP1, RGG4/DEP1/DN1/qPE9-1/OsGGC3, RGG4, OsDN1, OsGGC3, GGC3
30967	17909744	Jeung JU,Kim BR,Cho YC,Han SS,Moon HP,Lee YT,Jena KK	A novel gene, Pi40(t), linked to the DNA markers derived from NBS-LRR motifs confers broad spectrum of blast resistance in rice.	Theor. Appl. Genet.	115	1163-77	2007	PIZT,PI40,PIZ5,PI9,PIZ	Piz-t, Pi-zt, Pi-z(t), Pi2/Pizt, Pizt, Pi9, OsPiz-t,Pi40(t), Pi40, pi40, Pi-40(t), Pi-40,Piz-5, Pi-z5, Piz5, Pi-2(t), Pi-2, Pi2,Pi9(t), Pi9(t)*, Pi9, Pi-9(t),Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2
30968	17924090	Gu K,Sangha JS,Li Y,Yin Z	High-resolution genetic mapping of bacterial blight resistance gene Xa10.	Theor. Appl. Genet.	116	155-63	2008	XA10	Xa10, Xa-10
30969	17952400	Leonard JM,Watson CJ,Carter AH,Hansen JL,Zemetra RS,Santra DK,Campbell KG,Riera-Lizarazu O	Identification of a candidate gene for the wheat endopeptidase Ep-D1 locus and two other STS markers linked to the eyespot resistance gene Pch1.	Theor. Appl. Genet.	116	261-70	2008		
30970	17989953	Zheng X,Wu JG,Lou XY,Xu HM,Shi CH	The QTL analysis on maternal and endosperm genome and their environmental interactions for characters of cooking quality in rice (Oryza sativa L.).	Theor. Appl. Genet.	116	335-342	2008		
30971	18060657	Nishimura H,Ahmed N,Tsugane K,Iida S,Maekawa M	Distribution and mapping of an active autonomous aDart element responsible for mobilizing nonautonomous nDart1 transposons in cultivated rice varieties.	Theor. Appl. Genet.	116	395-405	2008	ADART,NDART1,ClpP5	aDart,nDart, nDART1, nDART,OsClpP5
30972	18074114	Spielmeyer W,Singh RP,McFadden H,Wellings CR,Huerta-Espino J,Kong X,Appels R,Lagudah ES	Fine scale genetic and physical mapping using interstitial deletion mutants of Lr34 /Yr18: a disease resistance locus effective against multiple pathogens in wheat.	Theor. Appl. Genet.	116	481-90	2008		
30973	18075727	Zhao CJ,Wang AR,Shi YJ,Wang LQ,Liu WD,Wang ZH,Lu GD	Identification of defense-related genes in rice responding to challenge by Rhizoctonia solani.	Theor. Appl. Genet.	116	501-16	2008	PR1B	OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1, OsPR1a, PR1a
30974	18092146	Xie X,Jin F,Song MH,Suh JP,Hwang HG,Kim YG,McCouch SR,Ahn SN	Fine mapping of a yield-enhancing QTL cluster associated with transgressive variation in an Oryza sativa x O. rufipogon cross.	Theor. Appl. Genet.	116	613-22	2008		
30975	18092148	Perugini LD,Murphy JP,Marshall D,Brown-Guedira G	Pm37, a new broadly effective powdery mildew resistance gene from Triticum timopheevii.	Theor. Appl. Genet.	116	417-25	2008		
30976	18097643	Madoka Y,Kashiwagi T,Hirotsu N,Ishimaru K	Indian rice "Kasalath" contains genes that improve traits of Japanese premium rice "Koshihikari".	Theor. Appl. Genet.	116	603-12	2008		
30977	18214422	Chung MC,Lee YI,Cheng YY,Chou YJ,Lu CF	Chromosomal polymorphism of ribosomal genes in the genus Oryza.	Theor. Appl. Genet.	116	745-53	2008		
30978	18219477	Xing YZ,Tang WJ,Xue WY,Xu CG,Zhang Q	Fine mapping of a major quantitative trait loci, qSSP7, controlling the number of spikelets per panicle as a single Mendelian factor in rice.	Theor. Appl. Genet.	116	789-96	2008	qSPP7	qSPP7
30979	18236025	Prigge V,Maurer HP,Mackill DJ,Melchinger AE,Frisch M	Comparison of the observed with the simulated distributions of the parental genome contribution in two marker-assisted backcross programs in rice.	Theor. Appl. Genet.	116	739-44	2008		
30980	18274726	Ando T,Yamamoto T,Shimizu T,Ma XF,Shomura A,Takeuchi Y,Lin SY,Yano M	Genetic dissection and pyramiding of quantitative traits for panicle architecture by using chromosomal segment substitution lines in rice.	Theor. Appl. Genet.	116	881-90	2008	qPBN6,qSBN1	qPBN6,qSBN1
30981		Virmani, S.S.	Development and use of a two-gene marker-aided selection system for fertility restorer genes in rice.	Euphytica	153	35	2007	RF3,RF4	Rf3* (R2, Rf2), Rf2, R2, Rf3, Rf-3,Rf4* (R1, Rf1), R1, Rf1, RfWA1, Rf4
30982		Li, P.	Introduction of the PPF1 gene into rice (Oryza sativa L.) results in delayed leaf senescence.	Euphytica	153	257	2007		
30983		Ahmadi, N. 	Genetic diversity of the two cultivated rice species (O. sativa &amp; O. glaberrima) in Maritime Guinea. Evidence for interspecific recombination.	Euphytica	154	127	2007		
30984		Torrizo, Lina	Golden rice: introgression, breeding, and field evaluation.	Euphytica	154	271	2007		
30985		Graham, Robin D.	Quantitative trait loci for phytate in rice grain and their relationship with grain micronutrient content.	Euphytica	154	289	2007		
30986		Ahn, Sang-Nag	Through the genetic bottleneck: O. rufipogon as a source of trait-enhancing alleles for O. sativa.	Euphytica	154	317	2007		
30987		Sano, Yoshio 	Evolutionary significances of cryptic variation in the reaction norm of photoperiod sensitivity of rice (Oryza sativa L.).	Euphytica	155	153	2007	S E1	s e1
30988		Palchamy, Kadirvel	Development of a DNA marker for distinguishing CMS lines from fertile lines in rice (Oryza sativa L.).	Euphytica	156	129	2007		
30989		van Eeuwijk, Fred A. 	QTL-based analysis of genotype-by-environment interaction for grain yield of rice in stress and non-stress environments.	Euphytica	156	213	2007		
30990		Zhang, Guiquan 	Construction and characterization of 3-S Lines, an alternative population for mapping studies in rice (Oryza sativa L.).	Euphytica	156	237	2007		
30991		Suh, Hak Soo 	Use of herbicide-resistant genic male sterility in hybrid rice seed production.	Euphytica	156	297	2007	BAR	bar
30992		Zhang, Guoping 	Genetic analysis of genotype x iron nutrition interaction on coleoptile elongation rate in rice (Oryza sativa L.).	Euphytica	156	311	2007		
30993		Jia, Yulin	Molecular characterization of the recombinant inbred line population derived from a japonica-indica rice cross.	Euphytica	159	73	2008		
30994		Yang, Xian-Ci 	Fixation of hybrid vigor in rice: opportunities and challenges.	Euphytica	160	287	2008		
30995		Virmani, Sant S. 	Comparative genetic analysis and molecular mapping of fertility restoration genes for WA, Dissi, and Gambiaca cytoplasmic male sterility systems in rice.	Euphytica	160	305	2008	RF3,RF4	Rf3* (R2, Rf2), Rf2, R2, Rf3, Rf-3,Rf4* (R1, Rf1), R1, Rf1, RfWA1, Rf4
30996		Schrevens, Eddie 	Dealing with sources of variability in the data-analysis of phenotyping experiments with transgenic rice.	Euphytica	160	325	2008		
30997		Eizenga, G. C. 	Molecular diversity and genome-wide linkage disequilibrium patterns in a worldwide collection of Oryza sativa and its wild relatives.	Euphytica	160	339	2008		
30998		Shashidhar, H. E. 	Identification of near-isogenic lines: an innovative approach, validated for root and shoot morphological characters in a mapping population of rice (Oryza sativa L.).	Euphytica	160	357	2008		
30999		Zhang, Gui-Quan 	Characterization of donor genome contents of backcross progenies detected by SSR markers in rice.	Euphytica	160	369	2008		
31000		Wan, Jianmin 	Genetic analysis of a novel dominant rice dwarf mutant 986083D.	Euphytica	160	379	2008	D53,DX	D53(D K3), DK3, Dwf34, SMXL6/7/8, OsD53,Dx
31001		Sanchez, I. 	Geographical patterns of phenotypic diversity in Oryza sativa landraces of Cote d'Ivoire.	Euphytica	160	389	2008		
31002		Singh, Kuldeep 	Development of high yielding IR64 x Oryza rufipogon (Griff.) introgression lines and identification of introgressed alien chromosome segments using SSR markers.	Euphytica	160	401	2008		
31003		Yamagishi, Junko 	Identification of QTLs controlling rice drought tolerance at seedling stage in hydroponic culture.	Euphytica	160	423	2008		
31004		Oard, James H. 	Development and application of allele-specific PCR assays for imazethapyr resistance in rice (Oryza sativa).	Euphytica	160	431	2008	ALS	OsALS, AHAS, OsALS1, ALS1
31005	17143630	Jiang L, Zhang W, Xia Z, Jiang G, Qian Q, Li A, Cheng Z, Zhu L, Mao L, Zhai W.	A paracentric inversion suppresses genetic recombination at the FON3 locus with breakpoints corresponding to sequence gaps on rice chromosome 11L.	Mol. Genet. Genomics	277	263-72	2007	FON3	FON3
31006	17180359	Moreno-Risueno MA, Martz M, Vicente-Carbajosa J, Carbonero P.	The family of DOF transcription factors: from green unicellular algae to vascular plants.	Mol. Genet. Genomics	277	379-90	2007		
31007	17237941	Grover A, Aishwarya V, Sharma PC.	Biased distribution of microsatellite motifs in the rice genome.	Mol. Genet. Genomics	277	469-80	2007		
31008	17593393	Zimmer A,Lang D,Richardt S,Frank W,Reski R,Rensing SA	Dating the early evolution of plants: detection and molecular clock analyses of orthologs.	Mol. Genet. Genomics	278	393-402	2007		
31009	17576597	Liu X,Yang Q,Lin F,Hua L,Wang C,Wang L,Pan Q	Identification and fine mapping of Pi39(t), a major gene conferring the broad-spectrum resistance to Magnaporthe oryzae.	Mol. Genet. Genomics	278	403-10	2007	PITA,PI39	Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30, Trx30,Pi39(t), Pi39
31010	17579886	Venu RC,Jia Y,Gowda M,Jia MH,Jantasuriyarat C,Stahlberg E,Li H,Rhineheart A,Boddhireddy P,Singh P,Rutger N,Kudrna D,Wing R,Nelson JC,Wang GL	RL-SAGE and microarray analysis of the rice transcriptome after Rhizoctonia solani infection.	Mol. Genet. Genomics	278	421-31	2007		
31011	17636330	Ray S,Agarwal P,Arora R,Kapoor S,Tyagi AK	Expression analysis of calcium-dependent protein kinase gene family during reproductive development and abiotic stress conditions in rice (Oryza sativa L. ssp. indica).	Mol. Genet. Genomics	278	493-505	2007	CDPK21,CDPK10,CDPK20,CDPK11,SPK,CDPK9,CDPK15,CDPK17,CDPK25,CDPK22,CDPK2,CDPK27,CDPK3,CDPK29,CDPK26,CDPK14,CDPK13,CDPK19,CDPK16,CDPK1,CDPK8,ESL4,CDPK5,CDPK28,CDPK31,CDPK4,CDPK6,CDPK24,CDPK30,CDPK7,CDPK18	OsCDPK21, OsCPK21, CPK21, CPK-21,OsCDPK10, OsCPK10, CPK10,OsCDPK20, OsCPK20, CPK20,OsCDPK11, OsCPK11, CPK11,CDPK 1, CDPK1, CDPK23, OsCDPK23, OsCPK23, CPK23, OsSPK,OsCDPK9, OsCPK9, CPK9,OsCDPK15, OsCPK15,OsCDPK17, OsCPK17, CPK17, OsCPK17.1, OsCPK17.2, OsCPK17.3, OsCPK17.4, OsCPK17.5,OsCDPK25, OsCPK25, CPK25,OsCDPK22, OsCPK22, CPK22,OsCDPK2, OsCPK2, CPK2,OsCDPK27, OsCPK27, CPK27,OsCDPK3, OsCPK3, CPK3,OsCDPK29, OsCPK29,OsCDPK26, OsCPK26, CPK26,OsCDPK14, OsCPK14, CPK14,OsCDPK13, OsCPK13, OsCDPK7, CDPK7, OsCPK13-1, OsCPK13-2,OsCDPK19, OsCPK19, OsCDPK2, CPK2, CDPK2,OsCDPK16, OsCPK16, CPK16,OsCDPK1, OsCPK1, CPK1,OsCDPK8, OsCPK8,CDPK12, OsCDPK12, OsCPK12, CPK12, OsESL4,OsCDPK5, OsCPK5, CPK5,OsCDPK28, OsCPK28, CPK28,OsCDPK31, OsCPK31, CPK31,OsCDPK4, OsCPK4, CPK4, CDPK1,OsCDPK6, OsCPK6, CPK6,OsCDPK24, OsCPK24, OsCDPK14, CPK24,OsCDPK30, OsCPK30, CPK30,OsCDPK7, OsCPK7, CDPK1, OsCDPK11, CDPK12, OsCDPK13,OsCDPK18, OsCPK18, CDPK5, OsCDPK5, CPK18
31012	17680272	Das SK,Pathak RR,Choudhury D,Raghuram N	Genomewide computational analysis of nitrate response elements in rice and Arabidopsis.	Mol. Genet. Genomics	278	519-25	2007		
31013	17665216	Fu BY,Xiong JH,Zhu LH,Zhao XQ,Xu HX,Gao YM,Li YS,Xu JL,Li ZK	Identification of functional candidate genes for drought tolerance in rice.	Mol. Genet. Genomics	278	599-609	2007		
31014	17805575	Sasaki K,Yuichi O,Hiraga S,Gotoh Y,Seo S,Mitsuhara I,Ito H,Matsui H,Ohashi Y	Characterization of two rice peroxidase promoters that respond to blast fungus-infection.	Mol. Genet. Genomics	278	709-22	2007		
31015	18000683	Sharma A,Presting GG	Centromeric retrotransposon lineages predate the maize/rice divergence and differ in abundance and activity.	Mol. Genet. Genomics	279	133-47	2008		
31016	17952471	Suzuki T,Eiguchi M,Kumamaru T,Satoh H,Matsusaka H,Moriguchi K,Nagato Y,Kurata N	MNU-induced mutant pools and high performance TILLING enable finding of any gene  mutation in rice.	Mol. Genet. Genomics	279	213-23	2008		
31017	16289622	Rao RS, Muralikrishna G.	Water soluble feruloyl arabinoxylans from rice and ragi: changes upon malting and their consequence on antioxidant activity.	Phytochemistry	67(1)	91-9	2006		
31018	16516937	Zeleny R, Leonard R, Dorfner G, Dalik T, Kolarich D, Altmann F.	Molecular cloning and characterization of a plant alpha1,3/4-fucosidase based on sequence tags from almond fucosidase I.	Phytochemistry	67(7)	641-8	2006		
31019	16777157	Horvath G, Wessjohann L, Bigirimana J, Jansen M, Guisez Y, Caubergs R, Horemans N.	Differential distribution of tocopherols and tocotrienols in photosynthetic and non-photosynthetic tissues.	Phytochemistry	67(12)	1185-95	2006		
31020	17466346	Ahn YO,Zheng M,Bevan DR,Esen A,Shiu SH,Benson J,Peng HP,Miller JT,Cheng CL,Poulton JE,Shih MC	Functional genomic analysis of Arabidopsis thaliana glycoside hydrolase family 35.	Phytochemistry	68	1510-20	2007		
31021	17499824	Fujitani Y,Horiuchi T,Ito K,Sugimoto M	Serine racemases from barley, Hordeum vulgare L., and other plant species represent a distinct eukaryotic group: gene cloning and recombinant protein characterization.	Phytochemistry	68	1530-6	2007		
31022	17524436	Cheng AX,Xiang CY,Li JX,Yang CQ,Hu WL,Wang LJ,Lou YG,Chen XY	The rice (E)-beta-caryophyllene synthase (OsTPS3) accounts for the major inducible volatile sesquiterpenes.	Phytochemistry	68	1632-41	2007	TPS13,FPPS1,TPS3	OsTPS13,OsFPPS1, FPPS, OsFPS,OsTPS3
31023	17512025	Iino M,Nomura T,Tamaki Y,Yamada Y,Yoneyama K,Takeuchi Y,Mori M,Asami T,Nakano T,Yokota T	Progesterone: its occurrence in plants and involvement in plant growth.	Phytochemistry	68	1664-73	2007	SBP,MSBP1,MSBP2	OsSBP, OsCYB5-9, CYB5-9,OsMSBP1, OsCYB5-12, CYB5-12,OsMSBP2, OsMSBP1, OsCYB5-13, CYB5-13
31024	17532018	Yamazoe S,Hasegawa K,Shigemori H	Growth inhibitory indole acetic acid polyacetylenic ester from Japanese ivy (Hedera rhombea Bean).	Phytochemistry	68	1706-11	2007		
31025	17475294	Huege J,Sulpice R,Gibon Y,Lisec J,Koehl K,Kopka J	GC-EI-TOF-MS analysis of in vivo carbon-partitioning into soluble metabolite pools of higher plants by monitoring isotope dilution after 13CO2 labelling.	Phytochemistry	68	2258-72	2007		
31026	17512026	Matsuda F,Wakasa K,Miyagawa H	Metabolic flux analysis in plants using dynamic labeling technique: application to tryptophan biosynthesis in cultured rice cells.	Phytochemistry	68	2290-301	2007		
31027	17628621	Kai K,Wakasa K,Miyagawa H	Metabolism of indole-3-acetic acid in rice: identification and characterization of N-beta-D-glucopyranosyl indole-3-acetic acid and its conjugates.	Phytochemistry	68	2512-22	2007		
31028	18022655	Shi F,Takasaki H,Komatsu S	Quantitative analysis of auxin-regulated proteins from basal part of leaf sheaths in rice by two-dimensional difference gel electrophoresis.	Phytochemistry	69	637-46	2008		
31029	17950386	Lin YZ,Chen HY,Kao R,Chang SP,Chang SJ,Lai EM	Proteomic analysis of rice defense response induced by probenazole.	Phytochemistry	69	715-28	2008	PAL,_,PAL1,_,GSTU17,ROMT9,_,PAL1,_	OsPAL, OsPAL08, PAL2, GP-28, GP28, PAL08, OsPAL2, OsPAL8, PAL8,OsPAL02, PAL02, OsPAL5, PAL5, OsPAL2. PAL2, OsPAL1,OsPAL, Pal1*, Pal1, PAL, Pal_1, PalI, PAL2, OsPAL01, PAL01, OSPAL, CP-1, GP-1, OsPAL1, PAL3, OsPAL3,OsPAL04, PAL04, PAL, OsPAL7, PAL7,OsGSTU17, OsGST23, GST23 ,COMT, OsCOMT, ROMT-9, OsCOMT1, OsCAldOMT1, CAldOMT1, OsOMT, OsCOMT15, COMT15,OsPAL05, PAL05, OsPAL3, PAL5, PAL3, OsPAL2;3, PAL2;3, OsPAL2-1, PAL2-1,OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6,OsPAL07, OsPAL, PAL07, OsPAL6, PAL6, PAL1, OsPAL7, PAL7
31030	18045629	Shimizu T,Jikumaru Y,Okada A,Okada K,Koga J,Umemura K,Minami E,Shibuya N,Hasegawa M,Kodama O,Nojiri H,Yamane H	Effects of a bile acid elicitor, cholic acid, on the biosynthesis of diterpenoid  phytoalexins in suspension-cultured rice cells.	Phytochemistry	69	973-81	2008	KS4,CPS4,KS7,CPS2	OsKS4, KS4, KSL4, OsKSL4, DTS2, OsDTS2, OsTPS16, TPS16, TPS8, OsTPS8,OsCPS4, CYC1, OsCYC1, OsCyc1, cpsl3, OsCPSL3, OsCPSsyn, OsCyc1/OsCPS4, OsTPS15, Os-CPS4, TPS11, OsTPS11,OsKS7, KS7, KSL7, OsKSL7, DTC1, OsDTC1, OsKS3, OsDTC1/OsKS7, OsTPS6, TPS6, TPS38, OsTPS38,OsCPS2, cps2, OsCPS2ent, CYC2, OsCyc2, OsCYC2, OsCPSL1, cpsl1, OsCyc2/OsCPS2, OsTPS7, Os-CPS2, TPS13, OsTPS13
31031	18191969	Kato A,Kato N,Miyauchi S,Minoshima Y,Adachi I,Ikeda K,Asano N,Watson AA,Nash RJ	Iminosugars from Baphia nitida Lodd.	Phytochemistry	69	1261-5	2008		
31032	16275658	Szeverenyi I, Ramamoorthy R, Teo ZW, Luan HF, Ma ZG, Ramachandran S.	Large-scale systematic study on stability of the Ds element and timing of transposition in rice.	Plant Cell Physiol.	47(1)	84-95	2006	BAR	bar
31033	16275657	Kamiya T, Akahori T, Ashikari M, Maeshima M.	Expression of the vacuolar Ca2+/H+ exchanger, OsCAX1a, in rice: cell and age specificity of expression, and enhancement by Ca2+.	Plant Cell Physiol.	47(1)	96-106	2006	CAX1A	OsCAX1a, CAX1a, CAX1, OsCAX1, OsNCX2, OsNCX2.1, OsNCX2.2, NCX2, OsVCAX1a
31034	16284406	Ito Y, Katsura K, Maruyama K, Taji T, Kobayashi M, Seki M, Shinozaki K, Yamaguchi-Shinozaki K.	Functional analysis of rice DREB1/CBF-type transcription factors involved in cold-responsive gene expression in transgenic rice.	Plant Cell Physiol.	47(1)	141-53	2006	DREB1B,DREB1A	OsDREB1B, ERF31, OsERF031, OsERF#031, OsERF31, AP2/EREBP#169, AP2/EREBP169, OsDREB1b, OsDREB1C, OsCBF1, CBF1,OsDREB1A, Os DREB1A, CBF3, OsCBF3, OsDREB1A/OsCBF3, ERF24, OsERF24, OsERF024, OsERF#024, AP2/EREBP#114, AP2/EREBP114, OsDREBL
31035	16299003	Chen CW, Yang YW, Lur HS, Tsai YG, Chang MC.	A novel function of abscisic acid in the regulation of rice (Oryza sativa L.) root growth and development.	Plant Cell Physiol.	47(1)	1-13	2006		
31036	16306061	Luo A, Qian Q, Yin H, Liu X, Yin C, Lan Y, Tang J, Tang Z, Cao S, Wang X, Xia K, Fu X, Luo D, Chu C.	EUI1, encoding a putative cytochrome P450 monooxygenase, regulates internode elongation by modulating gibberellin responses in rice.	Plant Cell Physiol.	47(2)	181-91	2006	EUI1	eui1, GA16,17ox, CYP714D1, EUI, CYP714D1/EUI, OsEUI, LG5, OsLG5
31037	16352697	Jan A, Nakamura H, Handa H, Ichikawa H, Matsumoto H, Komatsu S.	Gibberellin regulates mitochondrial pyruvate dehydrogenase activity in rice.	Plant Cell Physiol.	47(2)	244-53	2006	PDK1,PDK2	OsPDK1,OsPDK2
31038	16614094	Yasuda H, Hayashi Y, Jomori T, Takaiwa F.	The correlation between expression and localization of a foreign gene product in rice endosperm.	Plant Cell Physiol.	47(6)	756-63	2006	CHT1	Cht1*(Chi1), Ch16, Cht1, CHT-1, CH16, RC24, OsChia1a, OsChia1, Chi1, Cht1*, Chi-1, Cht-1, Cht1, RCC1, OsCht-1, PR3, OsPR3
31039	16774928	Tsuji H, Saika H, Tsutsumi N, Hirai A, Nakazono M.	Dynamic and reversible changes in histone H3-Lys4 methylation and H3 acetylation occurring at submergence-inducible genes in rice.	Plant Cell Physiol.	47(7)	995-1003	2006	PDC1,ADH1	pdc1*, pdc1, pdc4, pdc 1, PDC 1, OsPDC1,Adh1, Adh1/2, adh1/adh2, OsADH1
31040	16816407	Kojo K, Yaeno T, Kusumi K, Matsumura H, Fujisawa S, Terauchi R, Iba K.	Regulatory mechanisms of ROI generation are affected by rice spl mutations.	Plant Cell Physiol.	47(8)	1035-44	2006	SPL7,SPL11,SPL2	spl7, HSFA4D, HSF10, HSF15, OsHSF15, SP17, OsHsf-15, rHsf10, OsHsfA4d, HSfA4d, lrd13, HSF1,spl11, spl11*, OsPUB11, PUB11,  OsPUB11/SPL11, PUB11/SPL11,spl2(bl3), spl2, bl3
31041	17132630	Murakami M, Tago Y, Yamashino T, Mizuno T.	Comparative Overviews of Clock-Associated Genes of Arabidopsis thaliana and Oryza sativa.	Plant Cell Physiol.	48(1)	110-21	2007	PRR73,HD2,FKF1,TOC1,CCA1,PRR95,PCL1,GI,PRR59,ZTL2,ZTL1	OsPRR73, Os-PRR73, Prr3, OsPRR3, OsRRA20, OsCCT11, CCT11,Hd2(t), Hd2, qHD2(t), OsPRR37, Os-PRR37, PRR37, Prr4, OsPRR4, DTH7, Os DTH7, OsCCT28, CCT28, Ghd7.1, PRR37/Hd2, EH7-2, EH7-2/Hd2, Hd2/PRR37, PRR37-1a, PRR37-1b, PRR37-1c, PRR37-2a, PRR37- 2, HD7.2,OsFbox609, Os_F0370, OsFKF1,  OsFBO10, FBO10,OsTOC1, OsPRR1, Os-PRR1, PRR1, OsRRA21, OsCCT07,OsCCA1, OsLHY, LHY, LHY-like_chr.8, COC1, DLN203, OsDLN203, LEM1, OsLEM1, Nhd1, OsNhd1,OsPRR95, Os-PRR95, Prr2, OsPRR2, OsCCT33,OsPCL1, OsLUX, LUX, OsLVP2, LVP2,OsGI, Gi, Os-GI,OsPRR59, Os-PRR59, Prr5, OsPRR5, OsCCT38, CCT38,OsZTL2, OsFbox325, Os_F0374, ZTL1 ,  OsFBO9, FBO9,OsZTL1, OsFbox066, OsFbox66, Os_F0484, OsLKP2, LKP2,  OsFBO8, FBO8
31042	17468126	Jiang PL,Wang CS,Hsu CM,Jauh GY,Tzen JT	Stable oil bodies sheltered by a unique oleosin in lily pollen.	Plant Cell Physiol.	48	812-21	2007		
31043	17517758	Iwai T,Seo S,Mitsuhara I,Ohashi Y	Probenazole-induced accumulation of salicylic acid confers resistance to Magnaporthe grisea in adult rice plants.	Plant Cell Physiol.	48	915-24	2007		
31044	17567639	Fouquaert E,Hanton SL,Brandizzi F,Peumans WJ,Van Damme EJ	Localization and topogenesis studies of cytoplasmic and vacuolar homologs of the  Galanthus nivalis agglutinin.	Plant Cell Physiol.	48	1010-21	2007		
31045	17566055	Sugiura M,Georgescu MN,Takahashi M	A nitrite transporter associated with nitrite uptake by higher plant chloroplasts.	Plant Cell Physiol.	48	1022-35	2007		
31046	17597080	Chang CC,Huang PS,Lin HR,Lu CH	Transactivation of protein expression by rice HSP101 in planta and using Hsp101 as a selection marker for transformation.	Plant Cell Physiol.	48	1098-107	2007	HSP101	Oshsp101, OsHSP101, ClpB-cyt, OsClpB-cyt, ClpB-C/Hsp100, OsClpB-C
31047	17609219	Imamura T,Kusano H,Kajigaya Y,Ichikawa M,Shimada H	A rice dihydrosphingosine C4 hydroxylase (DSH1) gene, which is abundantly expressed in the stigmas, vascular cells and apical meristem, may be involved in  fertility.	Plant Cell Physiol.	48	1108-20	2007	DSH2,DSH3,DSH5,DSH4,DSH1	DSH2,DSH3,DSH5,DSH4,OsDSH1
31048	17634180	Koizumi K,Ookawa T,Satoh H,Hirasawa T	A wilty mutant of rice has impaired hydraulic conductance.	Plant Cell Physiol.	48	1219-28	2007		
31049	17693452	Oliver SN,Dennis ES,Dolferus R	ABA regulates apoplastic sugar transport and is a potential signal for cold-induced pollen sterility in rice.	Plant Cell Physiol.	48	1319-30	2007	ABA8OX2,NCED3,MST7,MST8,ABA8OX3,ABA1,ABA8OX1,NCED2,NCED1,CIN3	OsABA8OX2, OsABA8ox2, CYP707A6, OsCYP707A6, OsAba-ox2, OsABA8ox2, OsABA8OH2, ABA8OH2, ABA8'-OH2, OsABA8'ox2, ABA8'ox2, OsABAX2, ABAX2, OsABA8'OH2, ABA8'OH2,OSNCED3, OsNCED-3, OsNCED3, OsNCED3a, NCED3a, OsNCED4, NCED4, OsNECD2, OsNCED2b, NCED2b ,OsMST7, OSMST7, OsSTP7, STP7,OsMST8, OSMST8, OsSTP8, STP8,OsABA8OX3, OsABA8ox3, CYP707A7, OsCYP707A7, OsAba-ox3, OsABA8ox3, OsABA8'ox3, ABA8'ox3, OsABAX3, ABAX3, OsABA8'OH3, ABA8'OH3,OsABA1, Zep1, OsAba1, Aba2, OsAba2, OsZep1, Zep, OsZep, Aba1, OsABA2, Osaba1, OsZEP-1, OsZEP, OSZEP1, ZEP1, ZEP,OsABA8OX1, CYP707A5, OsCYP707A5, ABA8ox1, OsABA8ox1, OsABA8'OH1, ABA8'OH1 ,OSNCED2, OsNCED2, OsNCED5, NCED5,OSNCED1, OsNCED-1, OsNCED3, OsNced3, NCED3, OsNCED9, NCED9,OSINV4, OsINV4, INV4, OsCIN3
31050	17804480	Makino A,Sage RF	Temperature response of photosynthesis in transgenic rice transformed with 'sense' or 'antisense' rbcS.	Plant Cell Physiol.	48	1472-83	2007	RBCS	rbcS, OsRbcS, RBCS-C, RbcS2, OsRBCS2, RbcS1, OsRbcS2, OsrbcS1
31051	18003669	Reid R	Identification of boron transporter genes likely to be responsible for tolerance  to boron toxicity in wheat and barley.	Plant Cell Physiol.	48	1673-8	2007		
31052	17981875	Nozawa A,Nanamiya H,Miyata T,Linka N,Endo Y,Weber AP,Tozawa Y	A cell-free translation and proteoliposome reconstitution system for functional analysis of plant solute transporters.	Plant Cell Physiol.	48	1815-20	2007		
31053	18037673	Ishida K,Yamashino T,Yokoyama A,Mizuno T	Three type-B response regulators, ARR1, ARR10 and ARR12, play essential but redundant roles in cytokinin signal transduction throughout the life cycle of Arabidopsis thaliana.	Plant Cell Physiol.	49	47-57	2008		
31054	18296724	Abe M,Fujiwara M,Kurotani K,Yokoi S,Shimamoto K	Identification of dynamin as an interactor of rice GIGANTEA by tandem affinity purification (TAP).	Plant Cell Physiol.	49	420-32	2008	SE1,GI	Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, OsHd1,  Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,OsGI, Gi, Os-GI
31055	18252732	Suzuki K,Nagasuga K,Okada M	The chilling injury induced by high root temperature in the leaves of rice seedlings.	Plant Cell Physiol.	49	433-42	2008		
31056	18037610	Sakurai J,Ahamed A,Murai M,Maeshima M,Uemura M	Tissue and cell-specific localization of rice aquaporins and their water transport activities.	Plant Cell Physiol.	49	30-9	2008	TIP2;2,TIP2;1,PIP2;5,PIP2A,PIP2;3,TIP1;1	OsTIP2;2, TIP2-2,OsTIP2;1, TIP2-1, TIP2,OsPIP2;5, PIP2-5,OsPIP2a, PIP2-1, PIP2a, PIP2.1, OsPIP2;1, PIP2;1, OsPIP2-1,OsPIP2;3, PIP2-3, OsPIP2-2,OsTIP1;1, TIP1-1, rTIP1
31057	16944204	Sarhan, Fathey 	Putative fasciclin-like arabinogalactan-proteins (FLA) in wheat (Triticum aestivum) and rice (Oryza sativa): identification and bioinformatic analyses [electronic resource].	Molecular Genetics & Genomics (Molecular General Genetics up to 2001)	276(5)	478-494	2006		
31058	17103227	Francki, Michael G. 	Arabidopsis-rice-wheat gene orthologues for Na transport and transcript analysis in wheat-L. elongatum aneuploids under salt stress.	Molecular Genetics & Genomics (Molecular General Genetics up to 2001)	277	199-212	2007	NHX1	OsNHX1, OcNHX1, OgNHX1, OrNHX1, OpNHX1, ObNHX1
31059	17216490	Toriba,T., Harada,K., Takamura,A., Nakamura,H., Ichikawa,H., Suzaki,T. and Hirano,H.	Molecular characterization the YABBY gene family in Oryza sativa and expression analysis of OsYABBY1.	Molecular Genetics & Genomics (Molecular General Genetics up to 2001)	277	457-468	2007	YAB7,YAB6,YAB1,YAB3,YAB4,YAB5,SH1	OsYAB7,OsYAB6, OsYAB5,OsYAB1, FIL1, osFIL1,OsYAB3, OsYAB4, TOB3,OsYAB4, OsYAB7, TOB2, ,OsYABBY5, OsYAB3, YAB3, Os YABBY5, TOB1, OsTPB1,YAB2, OsYAB2, OsSh1, Sh1, OsFIL2, OsSH1, Osh1
31060	17404758	He, Chaozu 	The rice OsLOL2 gene encodes a zinc finger protein involved in rice growth and disease resistance.	Molecular Genetics & Genomics (Molecular General Genetics up to 2001)	278	85-94	2007	LOL2,PR1B,KS1	OsLOL2, OsLSD5, OsLOL5, LOL5,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1, OsPR1a, PR1a,OsKS1, KS1, KS1A, KSL1, OsKSL1, OsKS1A, OsKS1B, OsKS1C, Ks1, Os KS1, OsTPS26, TPS6, OsTPS6
31061	17169384	Komatsu, S.	A proteomics approach for identifying osmotic-stress-related proteins in rice [electronic resource].	Phytochemistry	68(4)	426-437	2007		
31062	17078983	Edwards, R.	Carboxylesterase activities toward pesticide esters in crops and weeds [electronic resource].	Phytochemistry	67(23)	2561-2567	2006		
31063	17379698	Makino, Amane	Increased Rubisco Content in Transgenic Rice Transformed with the 'Sense' rbcS Gene.	Plant Cell Physiol.	48(4)	626-637	2007	RBCL,RBCS1,RBCS5,RBCS4,RBCS3,RBCS	rbcL, rbcA, OsrbcL,RbcS1, OsRBCS1, OsRbcS1,RbcS5, OsRBCS5, OsRbcS5, RbcS3, OsRbcS3,RbcS, RbcS4, OsRBCS4, OsRbcS4,RbcS3, OsRBCS3, OsRbcS3, rbcS ,rbcS, OsRbcS, RBCS-C, RbcS2, OsRBCS2, RbcS1, OsRbcS2, OsrbcS1
31064	17412736	Iino, Moritoshi	Identification of the Gravitropism-Related Rice Gene LAZY1 and Elucidation of LAZY1-Dependent and -Independent Gravity Signaling Pathways.	Plant Cell Physiol.	48(5)	678-688	2007	LA1	OsLa1
31065	16990289	An, Gynheung	Identification of Active Transposon dTok, a Member of the hAT Family, in Rice.	Plant Cell Physiol.	47(11)	1473-1483	2006	FON1,MP2,DTOK0	OsFON1, fon1, OsRLCK219, RLCK219,mp2,dTok0
31066	16339852	Isshiki M, Tsumoto A, Shimamoto K.	The serine/arginine-rich protein family in rice plays important roles in constitutive and alternative splicing of pre-mRNA.	Plant Cell	18(1)	146-58	2006	SRP20,RSp29,SRP33B,SCL26,RSZP23,SRP33B,RSZP36,SRP32,SCL26,SC35C,SCL30B,SRP33A,RSZP37B,SC35B,RSZP39,RSZP21A,RSZP37A,SCL30A,RSP29,SC35A,RSP33,RSZP21B,SCL25	Os-SR40, OsSR40, SR40, OsSRp20, Os-SRp20, SF2, OsSF2,RSp29,Os-SR33, OsSR33, SR33, OsSRp33b, Os-SRp33b,SCL26,Os-RSZ23, OsRSZ23, Os-RSZp23, OsRSZp23, RSZp23,SRp33b,Os-RS2Z36, OsRS2Z36, Os-RSZ36, OsRSZ36, RSZ36,Os-SR32, OsSR32, SR32, OsSRp32, Os-SRp32,Os-SCL26, OsSCL26,Os-SC25, OsSC25, Os-SC35c, OsSC35c,OsSCL30, Os-SCL30, SCL30, OsSCL30b, Os-SCL30b,Os-SR33a, OsSR33a, SR33a, OsSRp33a, Os-SRp33a, OsSR34, SR34,Os-RS2Z38, OsRS2Z38, Os-RSZ37b, OsRSZ37b,OsSC32, Os-SC32, SC32, OsSC35b, Os-SC35b,Os-RS2Z39, OsRS2Z39, Os-RSZ39, OsRSZ39,Os-RSZ21a, OsRSZ21a, Os-RSZp21a, OsRSZp21a, RSZp21a,Os-RS2Z37, OsRS2Z37, RS2Z37, Os-RSZ37a, OsRSZ37a,Os-SCL30a, OsSCL30a, SCL30a,OsRS29, Os-RS29, OsRSp29, Os-RSp29, RSp29,Os-SC34, OsSC34, SC34, Os-SC35a, OsSC35a,OsRS33, Os-RS33, OsRSp33, Os-RSp33, RS33, RS33.2,Os-RSZ21, OsRSZ21, RSZ21, Os-RSZp21b, OsRSZp21b, RSZp21b,Os-SCL25, OsSCL25
31067	16452510	Hartweck LM, Olszewski NE.	Rice GIBBERELLIN INSENSITIVE DWARF1 is a gibberellin receptor that illuminates and raises questions about GA signaling.	Plant Cell	18(2)	278-82	2006	GID1	gid1, OsGID1, Thl, Os GID1
31068	16399802	Bortiri E, Chuck G, Vollbrecht E, Rocheford T, Martienssen R, Hake S.	ramosa2 encodes a LATERAL ORGAN BOUNDARY domain protein that determines the fate of stem cells in branch meristems of maize.	Plant Cell	18(3)	574-85	2006	RA2	ra2, Osra2, OsCrll4, CRL1L4, CRLL4, OsRA2
31069	16829590	Wang W, Zheng H, Fan C, Li J, Shi J, Cai Z, Zhang G, Liu D, Zhang J, Vang S, Lu Z, Wong GK, Long M, Wang J.	High rate of chimeric gene origination by retroposition in plant genomes.	Plant Cell	18(8)	1791-802	2006		
31070	16877494	Yan H, Ito H, Nobuta K, Ouyang S, Jin W, Tian S, Lu C, Venu RC, Wang GL, Green PJ, Wing RA, Buell CR, Meyers BC, Jiang J.	Genomic and genetic characterization of rice Cen3 reveals extensive transcription and evolutionary implications of a complex centromere.	Plant Cell	18(9)	2123-33	2006	CENH3	OsCENH3, CenH3
31071	16935986	Mulvenna JP, Mylne JS, Bharathi R, Burton RA, Shirley NJ, Fincher GB, Anderson MA, Craik DJ.	Discovery of cyclotide-like protein sequences in graminaceous crop plants: ancestral precursors of circular proteins?	Plant Cell	18(9)	2134-44	2006		
31072	16905658	Chen PW, Chiang CM, Tseng TH, Yu SM.	Interaction between rice MYBGA and the gibberellin response element controls tissue-specific sugar sensitivity of alpha-amylase genes.	Plant Cell	18(9)	2326-40	2006	AMY3E,AMY3D	Amy3D/E*(RAmy3D/E), alpha Amy8, alphaAmy8, AmyII-3, AMY1.4, Amy3E, Amy3D/E*, RAmy3D/E, Amy9, RAmy3E, alphaAmy8-C, AMY3E/AMY1.4, OsAmy3E, OsRamy3E,Amy3D/E*(RAmy3D/E), alpha Amy3, AmyII-4, AMY1.3, Amy3D, Amy3D/E*, RAmy3D/E, Amy3D_E, Amy8, aAmy3, RAmy3D, OsAmy3D, alphaAmy3, OsRamy3D
31073	17041148	Yang G, Weil CF, Wessler SR.	A rice Tc1/mariner-like element transposes in yeast.	Plant Cell	18(10)	2469-78	2006	MAR5	Osmar5
31074	17056708	Park G, Xue C, Zhao X, Kim Y, Orbach M, Xu JR.	Multiple upstream signals converge on the adaptor protein Mst50 in Magnaporthe grisea.	Plant Cell	18(10)	2822-35	2006		
31075	17056706	Oide S, Moeder W, Krasnoff S, Gibson D, Haas H, Yoshioka K, Turgeon BG.	NPS6, encoding a nonribosomal peptide synthetase involved in siderophore-mediated iron metabolism, is a conserved virulence determinant of plant pathogenic ascomycetes.	Plant Cell	18(10)	2836-53	2006		
31076	17098810	Kim DW, Lee SH, Choi SB, Won SK, Heo YK, Cho M, Park YI, Cho HT.	Functional conservation of a root hair cell-specific cis-element in angiosperms with different root hair distribution patterns.	Plant Cell	18(11)	2958-70	2006		
31077	17138695	Li N, Zhang DS, Liu HS, Yin CS, Li XX, Liang WQ, Yuan Z, Xu B, Chu HW, Wang J, Wen TQ, Huang H, Luo D, Ma H, Zhang DB.	The rice tapetum degeneration retardation gene is required for tapetum degradation and anther development.	Plant Cell	18(11)	2999-3014	2006	C6,CP1,TDR	Osc6, Osg6B, OsG6B, OsLTPG25, OsLTPg25, OsLtpVII.1, Os C6,OsCP1, Os CP1,tdr, OsbHLH005, bHLH005, OsbHLH5, bhlh5, TDR1, OsTDR, OsTDR1, OsMYC5, MYC5
31078	17138699	Jung KH, Han MJ, Lee DY, Lee YS, Schreiber L, Franke R, Faust A, Yephremov A, Saedler H, Kim YW, Hwang I, An G.	Wax-deficient anther1 is involved in cuticle and wax production in rice anther walls and is required for pollen development.	Plant Cell	18(11)	3015-32	2006	WDA1	OsWDA1, Wda1, wda1, OS-CER1, OsGL1-5
31079	17114350	Maruyama-Nakashita A, Nakamura Y, Tohge T, Saito K, Takahashi H.	Arabidopsis SLIM1 is a central transcriptional regulator of plant sulfur response and metabolism.	Plant Cell	18(11)	3235-51	2006		
31080	17209124	Lam SK, Siu CL, Hillmer S, Jang S, An G, Robinson DG, Jiang L.	Rice SCAMP1 Defines Clathrin-Coated, trans-Golgi-Located Tubular-Vesicular Structures as an Early Endosome in Tobacco BY-2 Cells.	Plant Cell	19	296-319	2007	SCAMP1	Scamp1, OsSCAMP1
31081	17586655	Shitsukawa N,Tahira C,Kassai K,Hirabayashi C,Shimizu T,Takumi S,Mochida K,Kawaura K,Ogihara Y,Murai K	Genetic and epigenetic alteration among three homoeologous genes of a class E MADS box gene in hexaploid wheat.	Plant Cell	19	1723-37	2007	MADS7,LHS1	OsMADS7, OsMADS45, FDRMADS1, RMADS216, AGL6, M79, MADS45, Os MADS7, Os MADS45, OsMADS7/45,OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO, OsLHS1, OsLG3b, LG3b, qLGY3, LGY3, DLN80, OsDLN80, OLR, OsOLR, GW3p6, OsGW3p6, OsMADS1GW3p6, MADS1GW3p6, qLGY3/OsLG3b/GW3p6
31082	17586654	Hong JP,Byun MY,Koo DH,An K,Bang JW,Chung IK,An G,Kim WT	Suppression of RICE TELOMERE BINDING PROTEIN 1 results in severe and gradual developmental defects accompanied by genome instability in rice.	Plant Cell	19	1770-81	2007	RTBP1	rtbp1, TBP1, OsTBP1
31083	17586658	Xiang Y,Huang X,Wang T,Zhang Y,Liu Q,Hussey PJ,Ren H	ACTIN BINDING PROTEIN 29 from Lilium pollen plays an important role in dynamic actin remodeling.	Plant Cell	19	1930-46	2007		
31084	17601827	Shimono M,Sugano S,Nakayama A,Jiang CJ,Ono K,Toki S,Takatsuji H	Rice WRKY45 plays a crucial role in benzothiadiazole-inducible blast resistance.	Plant Cell	19	2064-76	2007	PR1B,CYP709C9,WRKY45,SGT,PR10A,GSTU4,NH1,LOX11,WRKY62,WRKY76,PR1A,WRKY19	OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1, OsPR1a, PR1a,OsCYP709C9,OsWRKY45, OsWRKY45-1, OsWRKY45-2, WRKY45-1, WRKY45-2,OsSGT, UGT74H3, OsUGT74H3,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsGSTU4, GST4,OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2, DLN5, OsDLN5,  OsBTBA1, BTBA1,OsLOX11, OsRCI-1, RCI-1, OsBphi262, OsLOX12, OsLOX2.2, LOX2.2, LOX2.1, OsLOX2.1, OsLOX14, LOX14,OsWRKY62, OsWRKY62.1, OsWRKY62.2, XB10, OsWRKY62-1, OsWRKY62-2,OsWRKY76, OsWRKY76.1, OsWRKY76.2, OsWRKY76.3,OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1, OsPR1b, PR1alpha, OsPR1alpha,OsWRKY19
31085	17720868	Gingerich DJ,Hanada K,Shiu SH,Vierstra RD	Large-scale, lineage-specific expansion of a bric-a-brac/tramtrack/broad complex  ubiquitin-ligase gene family in rice.	Plant Cell	19	2329-48	2007		
31086	17766403	Lu CA,Lin CC,Lee KW,Chen JL,Huang LF,Ho SL,Liu HJ,Hsing YI,Yu SM	The SnRK1A protein kinase plays a key role in sugar signaling during germination  and seedling growth of rice.	Plant Cell	19	2484-99	2007	MYBS1,OSK1,OSK4,AMY3D	OsMYBS1, Os-MYBS1, Mybs1,osk1, SnRK1A, OsSnRK1A, OsSNRK1a, SnRK1A/OSK1, SnRK1a, OsSnRK1.2, SnRK1.2, OsSnRK1alphaA, SnRK1alphaA,osk4, OsK4, OsATG1c, ATG1C, SnRK1B, snrk1b, SnRK1B/OSK24, OSK24, OsK24, OsSNRK1b, OsSnRK1.4, SnRK1.4, OsSnRK1alphaC, SnRK1alphaC,Amy3D/E*(RAmy3D/E), alpha Amy3, AmyII-4, AMY1.3, Amy3D, Amy3D/E*, RAmy3D/E, Amy3D_E, Amy8, aAmy3, RAmy3D, OsAmy3D, alphaAmy3, OsRamy3D
31087	17704215	Skamnioti P,Gurr SJ	Magnaporthe grisea cutinase2 mediates appressorium differentiation and host penetration and is required for full virulence.	Plant Cell	19	2674-89	2007		
31088	17890377	Takahashi A,Agrawal GK,Yamazaki M,Onosato K,Miyao A,Kawasaki T,Shimamoto K,Hirochika H	Rice Pti1a negatively regulates RAR1-dependent defense responses.	Plant Cell	19	2940-51	2007	RLCK33,PISH,RAR1,PI19,RLCK178	OsPti1b, Pti1b, OsRLCK33,Pi sh, Pish, Pi-sh, Pish(t),Os RAR1, OsRAR1,Pi19(t), Pi14, Pi19,OsPti1a, Pti1a, OsRLCK178
31089	17965272	Hayama R,Agashe B,Luley E,King R,Coupland G	A circadian rhythm set by dusk determines the expression of FT homologs and the short-day photoperiodic flowering response in Pharbitis.	Plant Cell	19	2988-3000	2007	HD3A	Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a 
31090	17965273	Hirano K,Nakajima M,Asano K,Nishiyama T,Sakakibara H,Kojima M,Katoh E,Xiang H,Tanahashi T,Hasebe M,Banks JA,Ashikari M,Kitano H,Ueguchi-Tanaka M,Matsuoka M	The GID1-mediated gibberellin perception mechanism is conserved in the Lycophyte  Selaginella moellendorffii but not in the Bryophyte Physcomitrella patens.	Plant Cell	19	3058-79	2007	GID2,GID1	gid2, GF14e, OsGF14e, OsGID2, 14-3-3e,gid1, OsGID1, Thl, Os GID1
31091	18083909	Chhun T,Aya K,Asano K,Yamamoto E,Morinaka Y,Watanabe M,Kitano H,Ashikari M,Matsuoka M,Ueguchi-Tanaka M	Gibberellin regulates pollen viability and pollen tube growth in rice.	Plant Cell	19	3876-88	2007	KS1,GID1,KAO,SLR1,D35,GAMYB,GID2,CPS1	OsKS1, KS1, KS1A, KSL1, OsKSL1, OsKS1A, OsKS1B, OsKS1C, Ks1, Os KS1, OsTPS26, TPS6, OsTPS6,gid1, OsGID1, Thl, Os GID1,OsKAO, kao, CYP88A5, OSKAO, Os KAO, RPE1, KO1,slr1-1, slr1, slr, GAI, OsGAI, OsSLR1, Os SLR1, OsRGA1, OsGRAS-18, OsGRAS-18, GRAS-18, GRAS18, SLR-1,d35, d35(t), dwf30, OsKOL2, KOL2, KO2, OsKO2, OSKO2, KO, CYP701A, CYP701A6, Os KO2, OsKOL2/CYP701A,OsGAMYB, GAM1, OsGAMyb, Os-MYBGA, Os GAMYB, OsMYBGA, MYBGA, Os2R_MYB15, 2R_MYB15 ,gid2, GF14e, OsGF14e, OsGID2, 14-3-3e,OsCPS1, OsCPS1ent, OsCPS, Os CPS1, OsTPS4, TPS4, TPS29, OsTPS29, OsCPS1-L, OsCPS1-S
31092	18156215	Wong HL,Pinontoan R,Hayashi K,Tabata R,Yaeno T,Hasegawa K,Kojima C,Yoshioka H,Iba K,Kawasaki T,Shimamoto K	Regulation of rice NADPH oxidase by binding of Rac GTPase to its N-terminal extension.	Plant Cell	19	4022-34	2007	RAC2,RAC3,RAC4,RAC5,RAC6,RAC7,RBOHG,RBOHC,RBOHF,RBOHI,RBOHH,RBOHA,RBOHD,RAC1,RBOHE,RBOHB	OsRAC2, OsRac2, Os Rac2,OsRAC3, OsRac3, Os Rac3,OsRAC4, OsRac4, Os Rac4,OsRAC5, OsRac5, Os Rac5,OsRAC6, OsRac6, Os Rac6,OsRAC7, OsRac7, Os Rac7,rbohG, OsrbohG, Os rbohG, OsRbohG, OsNox7, Nox7, OsrbohB, OsRBOHB, RBOHB, OsRboh7, Rboh7,rbohC, OsrbohC, Os rbohC, OsRbohC, OsNox5, Nox5, OsrbohD, OsRboh5, RBOHA, OsRboh5, Rboh5,RbohF, rbohF, OsrbohF, Os rbohF, OsNox6, Nox6, OsrbohE, rbohE, OsRboh6, Rboh6,OsrbohI, Os rbohI, rbohI, OsRbohI, OsRbohF, OsNOX8, NOX8, OsRboh8, Rboh8,rbohH, OsrbohH, Os rbohH, OsNox9, Nox9, OsRboh9, Rboh9, Os-RbohH, RbohH ,rbohA, OsrbohA, Os rbohA, OsRbohA, OsNox2, Nox2, OsRboh2, Rboh2,rbohD, OsrbohD, Os rbohD, OsRbohD, OsNox4, OsRboh4, Rboh4,OsRAC1, OsRac1, Os Rac1, Rac1, Os-Rac1,rbohE, OsrbohE, Os rbohE, OsRbohE, OsNox3, Nox3, OsRboh3, Rboh3,rbohB, OsrbohB, Os rbohB, OsRbohB, OsNox1, Nox1, Os-RbohB, RbohB, OsRboh1, Rboh1
31093	18156216	Thao NP,Chen L,Nakashima A,Hara S,Umemura K,Takahashi A,Shirasu K,Kawasaki T,Shimamoto K	RAR1 and HSP90 form a complex with Rac/Rop GTPase and function in innate-immune responses in rice.	Plant Cell	19	4035-45	2007	HSP70,RAC1,HSP90	OsHSP70, OsEnS-45, EnS-45,OsRAC1, OsRac1, Os Rac1, Rac1, Os-Rac1,OsHsp90, rHSP90, OsHSP90, GRP94, OsGRP94
31094	17918309	Eckardt NA	GA perception and signal transduction: molecular interactions of the GA receptor  GID1 with GA and the DELLA protein SLR1 in rice.	Plant Cell	19	2095-7	2007	GID1,SLR1	gid1, OsGID1, Thl, Os GID1,slr1-1, slr1, slr, GAI, OsGAI, OsSLR1, Os SLR1, OsRGA1, OsGRAS-18, OsGRAS-18, GRAS-18, GRAS18, SLR-1
31095	18223036	Lee JH,Terzaghi W,Gusmaroli G,Charron JB,Yoon HJ,Chen H,He YJ,Xiong Y,Deng XW	Characterization of Arabidopsis and Rice DWD Proteins and Their Roles as Substrate Receptors for CUL4-RING E3 Ubiquitin Ligases.	Plant Cell	20	152-67	2008		
31096	18263775	Li X,Wang X,He K,Ma Y,Su N,He H,Stolc V,Tongprasit W,Jin W,Jiang J,Terzaghi W,Li S,Deng XW	High-Resolution Mapping of Epigenetic Modifications of the Rice Genome Uncovers Interplay between DNA Methylation, Histone Methylation, and Gene Expression.	Plant Cell	20	259-76	2008		
31097	18178768	Salse J,Bolot S,Throude M,Jouffe V,Piegu B,Quraishi UM,Calcagno T,Cooke R,Delseny M,Feuillet C	Identification and Characterization of Shared Duplications between Rice and Wheat Provide New Insight into Grass Genome Evolution.	Plant Cell	20	11-24	2008		
31098	17220363	Chen FC, Wang SS, Chaw SM, Huang YT, Chuang TJ.	PGAA, a Plant Genome Annotation Pipeline for Rice Gene and Alternatively Spliced Variant Identification with Cross-species EST Conservation from Seven Plant Species.	Plant Physiol.	143	1086-95	2007		
31099	17172291	Dardick C, Chen J, Richter T, Ouyang S, Ronald P.	The Rice Kinase Database. A Phylogenomic Database for the Rice Kinome.	Plant Physiol.	143	579-86	2006		
31100	17189339	Kleffmann T, von Zychlinski A, Russenberger D, Hirsch-Hoffmann M, Gehrig P, Gruissem W, Baginsky S.	Proteome Dynamics during Plastid Differentiation in Rice (Oryza sativa L.).	Plant Physiol.	143	912-23	2006		
31101	17449648	McSteen P,Malcomber S,Skirpan A,Lunde C,Wu X,Kellogg E,Hake S	barren inflorescence2 Encodes a co-ortholog of the PINOID serine/threonine kinase and is required for organogenesis during inflorescence and vegetative development in maize.	Plant Physiol.	144	1000-11	2007	BIF2	bif2, Osbif2, OsBIF2, OsPID, PID, OsAGC25, AGC25
31102	17535819	Xiang Y,Huang Y,Xiong L	Characterization of stress-responsive CIPK genes in rice for stress tolerance improvement.	Plant Physiol.	144	1416-28	2007	CIPK01,CIPK13,SOS2,CIPK28,CIPK25,CIPK22,CIPK29,CIPK21,CIPK27,CIPK26,CIPK05,CIPK17,CIPK16,CIPK14,CIPK15,CIPK18,CIPK11,CIPK10,CIPK06,CIPK07,CIPK20,PK4,CIPK30,CIPK23,CIPK09,CIPK08,PK7,CIPK04,CIPK03,CIPK02	OsCIPK01, CIPK1, OsCIPK1, OsSnRK3.3, SnRK3.3,OsCIPK13, OsSnRK3.1, SnRK3.1,CIPK24, OsCIPK24, OsSOS2, OsSnRK3.22, SnRK3.22,OsCIPK28, OsSnRK3.18, SnRK3.18,OsCIPK25, OsSnRK3.21, SnRK3.21,OsCIPK22, OsSnRK3.17, SnRK3.17,OsCIPK29, OsSnRK3.25, SnRK3.25,OsCIPK21, OsSnRK3.24, SnRK3.24,OsCIPK27, OsSnRK3.30, SnRK3.30,OsCIPK26, OsSnRK3.8, SnRK3.8,OsCIPK05, CIPK5, OsCIPK5, OsSTA7, OsSnRK3.2, SnRK3.2,OsCIPK17, OsSnRK3.14, SnRK3.14,OsCIPK16, OsSnRK3.29, SnRK3.29,OsCIPK14, OsSnRK3.33, SnRK3.33,OsCIPK15, OsSnRK3.31, SnRK3.31,OsCIPK18, OsSnRK3.16, SnRK3.16,OsCIPK11, OsMSURPK2, MSURPK2, OsSnRK3.7, SnRK3.7,OsCIPK10, OsSnRK3.12, SnRK3.12,OsCIPK06, CIPK6, OsCIPK6, OsSnRK3.28, SnRK3.28,OsCIPK07, CIPK7, OsCIPK7, OsSnRK3.13, SnRK3.13,OsCIPK20, OsSnRK3.15, SnRK3.15,OsCIPK19, OsPK4, OsPK04, Os-CIPK19, CIPK19, OsSnRK3.20, SnRK3.20,OsCIPK30, OsSnRK3.5, SnRK3.5,OsCIPK23, Os-CIPK23, OsSnRK3.23, SnRK3.23,OsCIPK09, CIPK9, OsCIPK9, OsSnRK3.10, SnRK3.10,OsCIPK08, CIPK8, OsCIPK8, OsSnRK3.4, SnRK3.4,OsPK7, OsPK07, OsCIPK12, CIPK12, OsSnRK3.6, SnRK3.6,OsCIPK04, CIPK4, OsCIPK4, OsSnRK3.35, SnRK3.35,OsCIPK03, CIPK3, OsCIPK3, OsSnRK3.27, SnRK3.27,OsCIPK02, CIPK2, OsCIPK2, OsSnRK3.26, SnRK3.26
31103	17468215	Huang L,Sun Q,Qin F,Li C,Zhao Y,Zhou DX	Down-regulation of a SILENT INFORMATION REGULATOR2-related histone deacetylase gene, OsSRT1, induces DNA fragmentation and cell death in rice.	Plant Physiol.	144	1508-19	2007	CHIB1,_,_,_,HSR203J,SAG12,JIOSPR10,SRT701,SRT1	Oschib1, chib1, PR-8, PR8, OsPR8, OsPR8b, PR8b,OsSAG13,osSRT702, OsSRT2,HSR201,OsHSR203J,OsSAG12,JIOsPR10, OsPR10, PR10, OsJiPR10, JiPR10, OsPR10c, PR10c,osSRT701, OsSIRT701, OsSRT1, SRT1, OS-SIR2,srt1*, srt1
31104	17496110	Ner-Gaon H,Leviatan N,Rubin E,Fluhr R	Comparative cross-species alternative splicing in plants.	Plant Physiol.	144	1632-41	2007		
31105	17556508	Shultz RW,Tatineni VM,Hanley-Bowdoin L,Thompson WF	Genome-wide analysis of the core DNA replication machinery in the higher plants Arabidopsis and rice.	Plant Physiol.	144	1697-714	2007	MCM7,MCM6,ORC2,CDC45-2,ORC1,ORC3,CDC45-1,ORC4,POLA2,POLA3,POLA4,POLD3,POLD4,RNASEH2,PSF1,PSF2,PSF3,MCM5,CDC6,MCM10,MCM9,NOC3,MCM8,MCM2,MCM4,MCM3,ORC5,ORC6,POLA	OsMCM7,OsMCM6,OsORC2,OsCDC45, CDC45,OsORC1,OsORC3,CDC45, OsCDC45, CDC45A,OsORC4,POLA2,POLA3,POLA4,POLD3,POLD4,RNASEH2,PSF1,OsPSF2, OsGINS, GINS,OsPSF3,OsMCM5,OsCDC6,OsMCM10,OsMCM9,NOC3,OsMCM8,OsMCM2,OsMCM4,OsMCM3,OsORC5,OsORC6,OSPOLA, Ospolalpha, OsDNAP, DNAP
31106	17556504	Li M,Xu W,Yang W,Kong Z,Xue Y	Genome-wide gene expression profiling reveals conserved and novel molecular functions of the stigma in rice.	Plant Physiol.	144	1797-812	2007		
31107	17586689	Obata T,Kitamoto HK,Nakamura A,Fukuda A,Tanaka Y	Rice shaker potassium channel OsKAT1 confers tolerance to salinity stress on yeast and rice cells.	Plant Physiol.	144	1978-85	2007	AKT1,AKT2,KAT1,KAT3,KAT2	OsAKT1, Os-AKT1,OsAKT2, ZMK2, OsZMK2, OsK3.1, K3.1,OsKAT1, OsKAT3,OsKAT3, OsKAT1, KAT1,OsKAT2
31108	17586688	Fujita N,Yoshida M,Kondo T,Saito K,Utsumi Y,Tokunaga T,Nishi A,Satoh H,Park JH,Jane JL,Miyao A,Hirochika H,Nakamura Y	Characterization of SSIIIa-deficient mutants of rice: the function of SSIIIa and  pleiotropic effects by SSIIIa deficiency in the rice endosperm.	Plant Physiol.	144	2009-23	2007	SSIIIB,SSI,WX1,FLO5	OsSSIIIb. SSIII-1, SSIIIa,OsSSI, SSS 1, SSS1, SS1, OsSS1, SSSI, OsSSSI,wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx,OsSSIIIa, SSIII-2, OsSSIII-2, OsSS3A, SS3A, SS3a, OsSSSIIIa, SSIIIa, Flo5
31109	17468223	Hecht V,Knowles CL,Vander Schoor JK,Liew LC,Jones SE,Lambert MJ,Weller JL	Pea LATE BLOOMER1 is a GIGANTEA ortholog with roles in photoperiodic flowering, deetiolation, and transcriptional regulation of circadian clock gene homologs.	Plant Physiol.	144	648-61	2007		
31110	17468221	Horst I,Welham T,Kelly S,Kaneko T,Sato S,Tabata S,Parniske M,Wang TL	TILLING mutants of Lotus japonicus reveal that nitrogen assimilation and fixation can occur in the absence of nodule-enhanced sucrose synthase.	Plant Physiol.	144	806-20	2007		
31111	17932303	Thole V,Worland B,Snape JW,Vain P	The pCLEAN dual binary vector system for Agrobacterium-mediated plant transformation.	Plant Physiol.	145	1211-9	2007		
31112	17951464	Campbell MA,Zhu W,Jiang N,Lin H,Ouyang S,Childs KL,Haas BJ,Hamilton JP,Buell CR	Identification and characterization of lineage-specific genes within the Poaceae.	Plant Physiol.	145	1311-22	2007		
31113	17932309	Sindhu A,Langewisch T,Olek A,Multani DS,McCann MC,Vermerris W,Carpita NC,Johal G	Maize Brittle stalk2 encodes a COBRA-like protein expressed in early organ development but required for tissue flexibility at maturity.	Plant Physiol.	145	1444-59	2007	BC1	bc1, bc-1, OsBC1, CWA1, FP1, OsPCS3, PCS3
31114	17951465	Kim SL,Lee S,Kim HJ,Nam HG,An G	OsMADS51 is a short-day flowering promoter that functions upstream of Ehd1, OsMADS14, and Hd3a.	Plant Physiol.	145	1484-94	2007	SE1,RAP1B,EF1,GI,HD3A,MADS51	Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, OsHd1,  Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,MADS14, OsMADS14, FDRMADS6, RMADS211, AGL10,Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,OsGI, Gi, Os-GI,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,OsMADS51, OsMADS65, MADS65, qHd1, DLN36, OsDLN36
31115	17951462	Menges M,Pavesi G,Morandini P,Bogre L,Murray JA	Genomic organization and evolutionary conservation of plant D-type cyclins.	Plant Physiol.	145	1558-76	2007	CYCD5;2,CYCD2;3,CYCD1;2,CYCD3;1,CYCD1;3,CYCD4;2,CYCD6;1,CYCD5;3,CYCD7,CYCD3,CYCD1;1,CYCD4;1,CYCD5;1,CYCD2;1,CYCD2;2,CYCD7;1	CycD5;2, CycD5;os;2, Orysa;CycD5;2, Orysa;CYCD5;2, OsCYCD5;1, CYCD5;1,CycD2;3, CycD2;os;3, Orysa;CycD2;3, Orysa;CYCD2;3, OsCYCD2;3,CycD1;2, CycD1;os;2, Orysa;CycD1;2, Orysa;CYCD1;2, OsCYCD1;1, CYCD1;1,CycD3;1, CycD3;os;1, Orysa;CycD3;1, Orysa;CYCD3;1, CycD3-1, OsCycD3-1, OsCYCD3;2, CYCD3;2,CycD1;3, CycD1;os;3, Orysa;CycD1;3, Orysa;CYCD1;3, OsCYCD1;2, CYCD1;2,CycD4;2, CycD4;os;2, Orysa;CycD4;2, Orysa;CYCD4;2, OsCYCD4;2,CycD6;1, CycD6;os;1, Orysa;CycD6;1, Orysa;CYCD6;1, OsCYCD6;1,CycD5;3, CYCD5-3, Orysa;CycD5;3, Orysa;CYCD5;3, OsCYCD5;3,CYCD7,CYCD3,CycD1;1, CycD1;os;1, Orysa;CycD1;1, Orysa;CYCD1;1, OsCYCD2;1, CYCD2;1,CycD2;1, CYCD2-1, Orysa;CycD2;1, OsCYCD2;1, Orysa;CycD4;1, CycD4;1, CYCD4-1, Orysa;CYCD4;1, cycD, OsCYCD4;1,,CycD5;1, CycD5;os;1, Orysa;CycD5;1, Orysa;CYCD5;1, OsCYCD5;2, CycD5;2,CycD2;1, CYCD2-1, OsCYCD2-1, Orysa;CycD2;1, Orysa;CYCD2;1, Orysa;CycD2;2, OsCYCD2;2, CYCD2;2,CycD2;2, CycD2;os;2, Orysa;CycD2;2, Orysa;CYCD2;2, CyclinD3;1, OsCYCD2;1, OsCYCD3;1, CYCD3;1,CycD7;1, CycD7;os;1, Orysa;CycD7;1, OsCYCD3, CYCD3, OsCYCD7;1
31116	17965173	Chen C,Gao M,Liu J,Zhu H	Fungal symbiosis in rice requires an ortholog of a legume common symbiosis gene encoding a Ca2+/calmodulin-dependent protein kinase.	Plant Physiol.	145	1619-28	2007	DMI3	OsDMI3, OsCCaMK1, OsCCaMK, OsCCAMK, CCAMK
31117	17951455	Cheng L,Wang F,Shou H,Huang F,Zheng L,He F,Li J,Zhao FJ,Ueno D,Ma JF,Wu P	Mutation in nicotianamine aminotransferase stimulated the Fe(II) acquisition system and led to iron accumulation in rice.	Plant Physiol.	145	1647-57	2007		
31118	17704235	Oh CS,Beer SV	AtHIPM, an ortholog of the apple HrpN-interacting protein, is a negative regulator of plant growth and mediates the growth-enhancing effect of HrpN in Arabidopsis.	Plant Physiol.	145	426-36	2007	HIPM	OsHIPM
31119	17827266	Lee S,Kim YY,Lee Y,An G	Rice P1B-type heavy-metal ATPase, OsHMA9, is a metal efflux protein.	Plant Physiol.	145	831-42	2007	_,HMA8,HMA6,HMA4,HMA5,HMA9	OsHMA4, HMA4,OsHMA6, osHMA8, HMA6, OsHMP20, HMP20,OsHMA5, osHMA6, HMA5, OsHMP11, HMP11,OsHMA7, osHMA4, HMA7, OsHMP12, HMP12,OsHMA8, osHMA5, HMA8, OsHMP27, HMP27,OsHMA9 ,oshma9-1, oshma9-2, HMA9, OsHMP33, HMP33
31120	17905867	Ma JF,Yamaji N,Tamai K,Mitani N	Genotypic difference in silicon uptake and expression of silicon transporter genes in rice.	Plant Physiol.	145	919-24	2007	LSI2,LSI1	Lsi2, SIET1, OsLsi2, OsSIET1,lsi1, NIP2-1, OsNIP2;1, NIP2;1, OsLsi1, lsi(t), OsNIP2.1/OsLsi1/OsSIIT1, OsNIP2.1, NIP2.1
31121	17993541	Qu S,Desai A,Wing R,Sundaresan V	A versatile transposon-based activation tag vector system for functional genomics in cereals and other monocot plants.	Plant Physiol.	146	189-99	2008		
31122	17981989	Ahn IP	Glufosinate ammonium-induced pathogen inhibition and defense responses culminate  in disease protection in bar-transgenic rice.	Plant Physiol.	146	213-27	2008		
31123	17993543	Danilevskaya ON,Meng X,Hou Z,Ananiev EV,Simmons CR	A genomic and expression compendium of the expanded PEBP gene family from maize.	Plant Physiol.	146	250-64	2008		
31124	18065552	Nijhawan A,Jain M,Tyagi AK,Khurana JP	Genomic survey and gene expression analysis of the basic leucine zipper transcription factor family in rice.	Plant Physiol.	146	333-50	2008	OSBZ8,BZIP18,BZIP39,BZIP46,BZIP13,ABI5,BZIP31,BZIP50,BZIP51,BZIP12,BZIP89,BZIP53,BZIP74,OBF1,BZIP69,BZIP22,BZIP37,BZIP42,TFX1,BZIP85,BZIP45,RF2A,LG2,BZIP61,BZIP82,RISBZ1,BZIP27,BZIP23,O3,_,ZIP2A,BZIP65,BZIP88,RISBZ4,BZIP6,BZIP21,BZIP26,BZIP25,BZIP29,RF2B,BZIP32,BZIP35,BZIP36,BZIP40,BZIP43,BZIP44,BZIP7,BZIP55,RITA1,BZIP56,BZIP54,BZIP48,BZIP14,BZIP47,BZIP19,BZIP83,BZIP17,BZIP64,BZIP49,ZIP1A,BZIP34,BZIP8,RSG,BZIP57,BZIP67,REB,BZIP2,BZIP16,BZIP41,BZIP4,BZIP59,BZIP81,BZIP79,BZIP68,BZIP71,LIP19,BZIP1,RISBZ5,BZIP9,BZIP24,BZIP77,BZIP76,BZIP78,BZIP70,BZIP63,BZIP3,BZIP62,TRAB1,BZIP72,BZIP28	OsBZ8, OsbZIP05, OsGBF1, GBF1, OsGBF1a, OsGBF1b,OsbZIP18,OsbZIP39, bZIP39, DLN138, OsDLN138,ABL1, bZIP46, OsABL1, OsbZIP46, OsAREB8, OsABF2, ABF2, OsABF3, ABF3, OsbZIP46CA1, OsZIP46, ZIP46, OsbZIP46/OsABF2,OsbZIP13,OsABI5, OsbZIP10, OsABF1, OREB1, OsABI5-1, OsABI5-2, OsOREB1, OREB1 ,OsbZIP31,OsbZIP60, bZIP50, OsbZIP50, OsbZIP74, bZIP74, OsbZIP50-S,OsbZIP51,OsbZIP12, OsABF1, ABF1, OsOSE2, OSE2, OsbZIP12/OsABF1,OsbZIP89,OsbZIP53, APIP5 ,OsbZIP74, OsTGA10, TGA10 ,OsOBF1, OsbZIP87,OsbZIP69, OsFD4, FD4,OsbZIP22, OsbZIP43, bZIP43,OsTGAP1, TGAP1, OsbZIP37,OsbZIP42, OsABF7, ABF7, HBF1, DLN149, OsDLN149,OsbZIP73, bZIP73, OsTFX1,OsbZIP85,OsbZIP45,RF2a, OsbZIP75,OsLG2, OsbZIP11, BZIP11,OsbZIP61,OsbZIP82,OsbZIP58, bZIP58, OsEnS-92, OsSMF1, SMF1, OsRISBZ1, RISBZ1/bZIP58,OsbZIP27,OsbZIP23, OsAREB1, OsABF2, Osbzip23, OsAREB2, OsZIP23, ZIP23,OsbZIP60, bZIP60,OsZIP-2b,OsbZIP80, OsZIP-2a,OsbZIP65,OsbZIP88,OsbZIP15,OsbZIP06, OsbZIP6,OsbZIP21,OsbZIP26,OsbZIP25,OsbZIP29,RF2b, OsbZIP30,OsbZIP32,OsbZIP35,OsbZIP36,OsbZIP40,OsbZIP43,OsbZIP44,OsbZIP07, OsbZIP7,OsbZIP55, OsFD2,OsbZIP20, bZIP20, RITA-1, RISBZ3,OsbZIP56, OsFD5,OsbZIP54, OsFD6,OsbZIP48, OsHY5, HY5,OsbZIP14,OsbZIP47,OsbZIP19,OsbZIP83, TGAL11, OsTGAL11, OsTGA2, TGA2,OsbZIP17, OsTGA4, TGA4,OsbZIP64, OsTGA4, TGA4,OsbZIP49, OsbZIP50, bZIP50,OsbZIP86, bZIP86, OsZIP-1a, ZIP-1a,OsbZIP34,OsbZIP08, OsbZIP8, OsTGA2, TGA2, OsTGA2/OsbZIP28,OsbZIP84, BZIP84,OsbZIP57,OsbZIP67,OsZIP33, RISBZ2, OsbZIP33,OsbZIP02, OsbZIP2, OsSTA8,OsbZIP16, OsSTA51,OsbZIP41, TGA1 ,OsbZIP04, OsbZIP4,OsbZIP59, BIP125,OsbZIP81, OsbZIP81.1, OsbZIP81.2,OsbZIP79,OsbZIP68,OsbZIP71, DLN221, OsDLN221, DLN222, OsDLN222,Lip19, lip19, OsLIP9, OsbZIP38, bZIP38,OsbZIP01, bZIP01, OsbZIP1, OsRE1, RE1,OsbZIP52, bZIP52,OsbZIP09, OsbZIP9, OsABF6, ABF6, HBF2,OsbZIP24, OsFD3, FD3, bZIP24/OsFD3,OsbZIP77, OsFD1, FD1,OsbZIP76, DLN229, OsDLN229,OsbZIP78, CRPG135, OsCRPG135,OsbZIP70,OsbZIP63, rTGA2.1, OsrTGA2.1, OsbZIP20, bZIP20,OsbZIP03, OsbZIP3, OsHBP1b, HBP1b, OsTGA5, TGA5, OsTGA5/OsbZIP3,OsbZIP62, OsABF8, OsEEL, EEL,OsbZIP66, OsABF5, Osbzip66, OsTRAB1, bZIP66, ABF5,OsbZIP72, OsAREB2, OsABF4, ABF4, Osbzip72, OsABI5, ABI5,OsbZIP28, OsbZIP1, OsNIF1, OsTGA3, TGA3, OsTGA3/OsbZIP08
31125	18156295	Kerk D,Templeton G,Moorhead GB	Evolutionary radiation pattern of novel protein phosphatases revealed by analysis of protein data from the completely sequenced genomes of humans, green algae, and higher plants.	Plant Physiol.	146	351-67	2008		
31126	18032588	Kronmiller BA,Wise RP	TEnest: automated chronological annotation and visualization of nested plant transposable elements.	Plant Physiol.	146	45-59	2008		
31127	18083797	Yang JL,Li YY,Zhang YJ,Zhang SS,Wu YR,Wu P,Zheng SJ	Cell wall polysaccharides are specifically involved in the exclusion of aluminum  from the rice root apex.	Plant Physiol.	146	602-11	2008		
31128	16403737	Kurata N, Yamazaki Y.	Oryzabase. An integrated biological and genome information database for rice.	Plant Physiol.	140(1)	39789	2006		
31129	16361516	Wang X, Xu Y, Han Y, Bao S, Du J, Yuan M, Xu Z, Chong K.	Overexpression of RAN1 in rice and Arabidopsis alters primordial meristem, mitotic progress, and sensitivity to auxin.	Plant Physiol.	140(1)	91-101	2006		
31130	16407444	Nakano T, Suzuki K, Fujimura T, Shinshi H.	Genome-wide analysis of the ERF gene family in Arabidopsis and rice.	Plant Physiol.	140(2)	411-32	2006	ERF101,ERF134,ERF62,FZP,ERF71,ERF91,RPH1,DREB2A,ERF68,ERF92,ERF93,ERF13,ERF69,ERF16,ERF106,ERF23,ERF77,ERF45,ERF120,ERF128,ERF135,ERF138,ERF84,ERF89,ERF113,ERF122,ERF125,ERF126,ERF129,ERF80,ERF85,ERF86,ERF90,ERF94,ERF97,ERF18,ERF53,ERF95,ERF72,ERF19,ERF21,ERF36,ERF37,ERF39,ERF43,ERF46,ERF49,ERF54,ERF55,ERF56,ERF137,ERF136,ERF22,ERF65,ERF139,ERF108,ERF114,DREB1D,ERF123,ERF8,ERF132,ERF20,ERF76,ERF74,ERF7,ERF119,ERF121,ERF96,ERF59,ERF15,ERF1,ERF17,ERF131,ERF47,ERF11,ERF111,ERF127,ERF109,ERF32,ERF87,ERF110,ERF41,ERF66,MFS1,ERF51,ERF112,ERF117,NDL1,ERF67,ERF61,ERF57,ERF58,ERF50,ERF81,ERF82,ERF83,ERF88,ERF4,ERF5,ERF6,ERF10,ERF9,ERF14,ERF98,ERF107,ERF100,ERF118,ERF38,ERF34,ERF64,ERF12,ERF33,ERF3,ERF99,ERF124,ERF35,ERF103,ERF2,EBP-89,ERF42,ERF115,ERF44,ERF28,ERF133,SUB1B,DREB1F,DREB1G,ERF102,ERF48,DREB1C,DREB1A,ERF3,DREB1E,EREBP1,DREB1B,SUB1C,ERF105,ERF104	OsERF#101, OsERF101, OsDERF6, DERF6, AP2/EREBP#089, AP2/EREBP89, OsRap2.6, Rap2.6, ERF113, OsERF113, OsERF101/OsRAP2.6,OsERF#134, OsERF134, AP2/EREBP#011, AP2/EREBP11, DLN46, OsDLN46,OsERF#062, OsERF062, OsERF62, AP2/EREBP#125, AP2/EREBP125, AP2-125, OsLG3, LG3, OsLG3/OsAP2-125, OsAP2-125, WAP1, OsWAP1, OsSTAP1, STAP1, ERF1, OsERF1,fzp*, fzp, OsBD1, BD1, OsERF#078, OsERF078, OsERF78, ERF78, AP2/EREBP#133, AP2/EREBP133, BFL1, SGDP7, OsSGDP7,OsERF#071, OsERF071, OsERF71, AP2/EREBP#124, AP2/EREBP124, OsERF15,OsERF#091, OsERF091, OsERF91, AP59, OsAP59, AP2/EREBP#147, AP2/EREBP147, OsBIERF3, BIERF3,OsERF#052, OsERF052, OsERF52, ERF52, AP2/EREBP#053, AP2/EREBP53, OsRPH1, STG5, OsSTG5,OsDREB2A, OsDREB2a, ERF40, OsERF#040, OsERF040, OsERF40, AP2/EREBP#167, AP2/EREBP167,OsERF#068, OsERF068, OsERF68, AP2/EREBP#003, AP2/EREBP3, ERF2,OsERF#092, OsERF092, OsERF92, ERF922, OsERF922, AP2/EREBP#078, AP2/EREBP78,OsERF1, ERF1, OsERF#093, OsERF093, OsERF93, AP2/EREBP#168, AP2/EREBP168,OsERF#013, OsERF013, OsERF13, AP2/EREBP#143, AP2/EREBP143,OsERF#069, OsERF069, OsERF69, AP2/EREBP#028, AP2/EREBP28, DLN77, OsDLN77, HINGE5, OsHINGE5,OsERF#016, OsERF016, OsERF16, AP2/EREBP#055, AP2/EREBP55,DERF7, OsDERF7, OsERF#106, OsERF106, AP2/EREBP#111, AP2/EREBP111, OsERF106MZ, ERF106MZ,OsERF#023, OsERF023, OsERF23, AP2/EREBP#144, AP2/EREBP144,OsAP2-39, AP2-39, OsERF#077, OsERF077, OsERF77, AP2/EREBP#149, AP2/EREBP149, DLN121, OsDLN121,OsERF#045, OsERF045, OsERF45, AP2/EREBP#119, AP2/EREBP119,OsERF#120, OsERF120, AP2/EREBP#105, AP2/EREBP105,OsERF#128, OsERF128, AP2/EREBP#034, AP2/EREBP34,OsERF#135, OsERF135,OsERF#138, OsERF138, AP2/EREBP#108, AP2/EREBP108,OsERF#084, OsERF084, OsERF84, OsDERF10, DERF10, AP2/EREBP#097, AP2/EREBP97,OsERF#089, OsERF089, OsERF89, AP2/EREBP#154, AP2/EREBP154,OsERF#113, OsERF113, AP2/EREBP#058, AP2/EREBP58,OsERF#122, OsERF122, AP2/EREBP#056, AP2/EREBP56,OsERF#125, OsERF125, AP2/EREBP#016, AP2/EREBP16,OsERF#126, OsERF126,OsERF#129, OsERF129, AP2/EREBP#045, AP2/EREBP45,OsERF#080, OsERF080, OsERF80, AP2/EREBP#069, AP2/EREBP69,OsERF#085, OsERF085, OsERF85, AP2/EREBP#151, AP2/EREBP151, AP2/EREBP#062, AP2/EREBP62,DERF2, OsDERF2, OsERF#086, OsERF086, OsERF86, AP2/EREBP#074, AP2/EREBP74, OsERF1,OsERF#090, OsERF090, OsERF90, AP2/EREBP#071, AP2/EREBP71,OsERF#094, OsERF094, OsERF94, AP2/EREBP#039, AP2/EREBP39,OsERF#097, OsERF097, OsERF97, AP2/EREBP#038, AP2/EREBP38,OsERF#018, OsERF018, OsERF18, AP2/EREBP#115, AP2/EREBP115,OsERF#053, OsERF053, OsERF53, AP2/EREBP#134, AP2/EREBP134,OsERF#095, OsERF095, OsERF95, AP2/EREBP#020, AP2/EREBP20, OsSta2, Sta2 ,OsEREBP, OsERF#072, OsERF072, OsERF72, AP2/EREBP#064, AP2/EREBP64, BIERF1, OsBIERF1, OsEBP2,OsERF#019, OsERF019, OsERF19, AP2/EREBP#157, AP2/EREBP157,OsERF#021, OsERF021, OsERF21, AP2/EREBP#140, AP2/EREBP140,OsERF#036, OsERF036, OsERF36, AP2/EREBP#007, AP2/EREBP7,OsERF#037, OsERF037, OsERF37, AP2/EREBP#041, AP2/EREBP41,OsERF#039, OsERF039, OsERF39, AP2/EREBP#002, AP2/EREBP2,OsERF#043, OsERF043, OsERF43, AP2/EREBP#095, AP2/EREBP95,OsERF#046, OsERF046, OsERF46,OsERF#049, OsERF049, OsERF49, AP2/EREBP#132, AP2/EREBP132,OsERF#054, OsERF054, OsERF54, AP2/EREBP#162, AP2/EREBP162,OsERF#055, OsERF055, OsERF55, AP2/EREBP#146, AP2/EREBP146,OsERF#056, OsERF056, OsERF56, AP2/EREBP#164, AP2/EREBP164,OsERF#137, OsERF137, AP2/EREBP136, AP2/EREBP#136,OsERF#136, OsERF136, AP2/EREBP#106, AP2/EREBP106, AP2-106,OsERF#022, OsERF022, OsERF22, AP2/EREBP#087, AP2/EREBP87,OsERF#065, OsERF065, OsERF65, AP2/EREBP#107, AP2/EREBP107,OsERF#139, OsERF139,OsAP2, OsERF#108, OsERF108, AP2/EREBP#001, AP2/EREBP1, RD2,OsERF#114, OsERF114,OsDREB1D, CBF4, ERF116, OsERF#116, OsERF116, AP2/EREBP#054, AP2/EREBP54, OsCbf1, OsCBF1,OsERF#123, OsERF123, AP2/EREBP#066, AP2/EREBP66,OsERF#008, OsERF008, OsERF8, AP2/EREBP#128, AP2/EREBP128, DLN123, OsDLN123,OsERF#132, OsERF132, AP2/EREBP#010, AP2/EREBP10, DLN41, OsDLN41,OsERF#020, OsERF020, OsERF20, AP2/EREBP#126, AP2/EREBP126, OsDREB1G,OsERF#076, OsERF076, OsERF76, AP2/EREBP#046, AP2/EREBP46, DLN126, OsDLN126,OsERF#074, OsERF074, OsERF74, AP2/EREBP#051, AP2/EREBP51, DLN152, OsDLN152,OsERF#007, OsERF007, OsERF7, AP2/EREBP#142, AP2/EREBP142, DLN158, OsDLN158,OsERF#119, OsERF119, AP2/EREBP#104, AP2/EREBP104, DLN161, OsDLN161,OsERF#121, OsERF121, AP2/EREBP#061, AP2/EREBP61, DLN174, OsDLN174,DERF12, OsDERF12, OsERF#096, OsERF096, OsERF96, AP2/EREBP#116, AP2/EREBP116, OsAP2, OsAP2.1, OsAP2.2, OsERF36,OsERF#059, OsERF059, OsERF59, EBL1, AP2/EREBP#006, AP2/EREBP6,OsERF#015, OsERF015, OsERF15, AP2/EREBP#102, AP2/EREBP102,Os06ERF, OsWR2, WR2, OsERF#001, OsERF001, OsERF1, AP2/EREBP#057, AP2/EREBP57, RD1, OsSHN, SHN,OsERF#017, OsERF017, OsERF17, AP2/EREBP#091, AP2/EREBP91,OsERF#131, OsERF131, AP2/EREBP#094, AP2/EREBP94, SERF1, OsSERF1,OsERF#047, OsERF047, OsERF47, AP2/EREBP#121, AP2/EREBP121,OsERF#011, OsERF011, OsERF11, OsDERF9, DERF9, AP2/EREBP#083, AP2/EREBP83, DLN69, OsDLN69, ERF17_Ath,OsERF#111, OsERF111, SKL4, OsSKL4, SKL4-1, SKL4-2, SKL4-1Nipponbare, SKL4-2C9285,OsWR3, WR3, OsERF#127, OsERF127, AP2/EREBP#023, AP2/EREBP23, OsERF3, ERF3,OsERF#109, OsERF109, AP2/EREBP#063, AP2/EREBP63, DLN223, OsDLN223,OsERF#032, OsERF032, OsERF32, AP2/EREBP#021, AP2/EREBP21, OsDREB2B,OsERF#087, OsERF087, OsERF87, AP2/EREBP#067, AP2/EREBP67,OsERF#110, OsERF110, AP2/EREBP#008, AP2/EREBP8, SKL2, OsSKL2, SKL2-1, SKL2-2, SKL2-1Nipponbare, SKL2-2C9285,OsERF#041, OsERF041, OsERF41, AP2/EREBP#025, AP2/EREBP25, OsDREB2E,OsERF#066, OsERF066, OsERF66, AP2/EREBP#030, AP2/EREBP30, EREBP30,ERF130, OsERF#130, OsERF130, AP2/EREBP#165, AP2/EREBP165, DLN151, OsDLN151,OsERF#051, OsERF051, OsERF51, DERF11, OsDERF11, AP2/EREBP#156, AP2/EREBP156, RAP2-13, OsRAP2-13,OsERF#112, OsERF112, AP2/EREBP#009, AP2/EREBP9, SKL3, OsSKL3, SKL3-1, SKL3-2, SKL3-3, SKL3-1C9285, SKL3-2Nipponbare, SKL3-3C9285,OsERF#117, OsERF117, AP2/EREBP#150, AP2/EREBP150, OsABI4, ABI4,ERF79, OsERF#079, OsERF079, OsERF79, AP2/EREBP#017, AP2/EREBP17, OsNDL1, DSP, OsDSP,OsERF#067, OsERF067, OsERF67, AP2/EREBP#076, AP2/EREBP76,OsERF#061, OsERF061, OsERF61, AP2/EREBP#093, AP2/EREBP93,OsERF#057, OsERF057, OsERF57, AP2/EREBP#145, AP2/EREBP145, OsERF1, ERF1,OsERF#058, OsERF058, OsERF58, AP2/EREBP#032, AP2/EREBP32, OsERF77, ERF77,OsERF#050, OsERF050, OsERF50, AP2/EREBP#113, AP2/EREBP113, OsDREB6, OsERF60, ERF60,OsERF#081, OsERF081, OsERF81, AP2/EREBP#014, AP2/EREBP14,OsERF#082, OsERF082, OsERF82, AP2/EREBP#035, AP2/EREBP35,OsERF#083, OsERF083, OsERF83, AP2/EREBP#163, AP2/EREBP163,OsERF#088, OsERF088, OsERF88, AP2/EREBP#024, AP2/EREBP24, OsAP23,OsERF#004, OsERF004, OsERF4, AP2/EREBP#159, AP2/EREBP159,OsERF#005, OsERF005, OsERF5, AP2/EREBP#072, AP2/EREBP72,OsERF#006, OsERF006, OsERF6, AP2/EREBP#075, AP2/EREBP75,OsERF#010, OsERF010, OsERF10,OsERF#009, OsERF009, OsERF9, AP2/EREBP#135, AP2/EREBP135,OsERF#014, OsERF014, OsERF14, AP2/EREBP#103, AP2/EREBP103,OsERF#098, OsERF098, OsERF98, AP2/EREBP#120, AP2/EREBP120,OsERF#107, OsERF107, AP2/EREBP#015, AP2/EREBP15,OsERF#100, OsERF100, AP2/EREBP#036, AP2/EREBP36,OsERF#118, OsERF118, AP2/EREBP#117, AP2/EREBP117,OsERF#038, OsERF038, OsERF38, AP2/EREBP#082, AP2/EREBP82, OsDREB4-1,OsERF#034, OsERF034, OsERF34, AP2/EREBP#042, AP2/EREBP42,OsERF#064, OsERF064, OsERF64, AP2/EREBP#029, AP2/EREBP29, OsBIERF4, BIERF4,OsERF#012, OsERF012, OsERF12, OsDERF1, DERF1, AP2/EREBP#070, AP2/EREBP70,OsERF#033, OsERF033, OsERF33, AP2/EREBP#040, AP2/EREBP40, OsDREB4-2,Os02ERF, OsSHN1, OsWR1, WR1, OsERF#003, OsERF003, OsERF3, AP2/EREBP#012, AP2/EREBP12,OsERF#099, OsERF099, OsERF99, AP2/EREBP#080, AP2/EREBP80, OsEREBP2, EREBP2,DERF8, OsDERF8, OsERF#124, OsERF124, AP2/EREBP#158, AP2/EREBP158,OsERF#035, OsERF035, OsERF35, AP2/EREBP#148, AP2/EREBP148, OsAP211, ARAG1, OsARAG1,DERF5, OsDERF5, OsERF#103, OsERF103, AP2/EREBP#130, AP2/EREBP130, OsERF109,OsWR4, WR4, OsERF#002, OsERF002, ERF002, OsERF2, AP2/EREBP#100, AP2/EREBP100,OsEBP-89, ebp-89, OsERF#060, OsERF060, OsERF60, ERF60, AP2/EREBP#027, AP2/EREBP27, OsEBP89, DLN76, OsDLN76,OsERF#042, OsERF042, OsERF42, AP2/EREBP#048, AP2/EREBP48, OsDREB2B, DREB2B, OsDREB2B2, OsDREB2A, DREB2A,OsERF#115, OsERF115, AP2/EREBP#110, AP2/EREBP110, OsEnS-123,OsERF#044, OsERF044, OsERF44, AP2/EREBP#112, AP2/EREBP112, OsDREB2C, DREB2C, OsEnS-124,OsERF#028, OsERF028, OsERF28, OsERF#029, OsERF029, OsERF29, ERF29, DERF4, OsDERF4, AP2/EREBP#161, AP2/EREBP161, OsDREB1J, OsDREB1I, OsDREB1G,OsERF#133, OsERF133, AP2/EREBP#065, AP2/EREBP65, OsDREB1H, DREB1H, OsDREB1m, DREB1m,Sub1B, OsSUB1B, OsERF#063, OsERF063, ERF063, OsERF63, ERF63, AP2/EREBP#166, AP2/EREBP166,OsERF#027, OsERF027, OsERF27, ERF27, AP2/EREBP#081, AP2/EREBP81, OsDREB1F,OsDREB1G, OsERF025, OsERF#025, OsERF25, ERF25, AP2/EREBP#138, AP2/EREBP138, OsDREB1I,OsERF#102, OsERF102, AP2/EREBP#123, AP2/EREBP123, OsEATB, EATB,OsERF#048, OsERF048, OsERF48, AP2/EREBP#170, AP2/EREBP170, OsDRAP1, DRAP1, OsERF48/OsDRAP1,OsDREB1C, CBF1, ERF26, OsERF026, OsERF#026, OsERF26, AP2/EREBP#098, AP2/EREBP98, OsCBF2, CBF2,OsDREB1A, Os DREB1A, CBF3, OsCBF3, OsDREB1A/OsCBF3, ERF24, OsERF24, OsERF024, OsERF#024, AP2/EREBP#114, AP2/EREBP114, OsDREBL,AP37, OsAP37, OsERF3, OsERF#075, OsERF075, OsERF75, ERF75, AP2/EREBP#004, AP2/EREBP4, OsBIERF2, BIERF2, DLN23, OsDLN23,OsDREB1E, OsERF030, OsERF#030, OsERF30, ERF30, AP2/EREBP#160, AP2/EREBP160, OsDREB1-1,OsEREBP1, OsERF#070, OsERF070, OsERF70, ERF70, AP2/EREBP#084, AP2/EREBP84,OsDREB1B, ERF31, OsERF031, OsERF#031, OsERF31, AP2/EREBP#169, AP2/EREBP169, OsDREB1b, OsDREB1C, OsCBF1, CBF1,Sub1C, OsSUB1C, OsERF#073, OsERF073, ERF073, OsERF73, ERF73, AP2/EREBP#122, AP2/EREBP122, SUB1B,OsERF#105, OsERF105, AP2/EREBP#050, AP2/EREBP50,DERF3, OsDERF3, OsERF#104, OsERF104, AP2/EREBP#152, AP2/EREBP152, RAP2, OsRAP2
31131	16384900	Bethke PC, Hwang YS, Zhu T, Jones RL.	Global patterns of gene expression in the aleurone of wild-type and dwarf1 mutant rice.	Plant Physiol.	140(2)	484-98	2006	D1	d1, GPA1, GA1, OsGA1, RGA1, dwf1, XA7, RGA, D1/RGA1, D89, TGW5, OsTGW5, SRG5, OsSRG5
31132	16384895	Fujiwara M, Umemura K, Kawasaki T, Shimamoto K.	Proteomics of Rac GTPase signaling reveals its predominant role in elicitor-induced defense response of cultured rice cells.	Plant Physiol.	140(2)	734-45	2006	PHB,CPN60,RAC1	prohibitin,chaperonin 60,OsRAC1, OsRac1, Os Rac1, Rac1, Os-Rac1
31133	16443699	Fujita N, Yoshida M, Asakura N, Ohdan T, Miyao A, Hirochika H, Nakamura Y.	Function and characterization of starch synthase I using mutants in rice.	Plant Physiol.	140(3)	1070-84	2006	SSIIIB,SSI,FLO5,ALK	OsSSIIIb. SSIII-1, SSIIIa,OsSSI, SSS 1, SSS1, SS1, OsSS1, SSSI, OsSSSI,OsSSIIIa, SSIII-2, OsSSIII-2, OsSS3A, SS3A, SS3a, OsSSSIIIa, SSIIIa, Flo5,alk, SSII-3, OsSSIIa, OsSSII-3, SSIIa, SSS2A, OsSSIIaChr6, SS2a
31134	16524980	Klimmek F, Sjdin A, Noutsos C, Leister D, Jansson S.	Abundantly and rarely expressed Lhc protein genes exhibit distinct regulation patterns in plants.	Plant Physiol.	140(3)	793-804	2006		
31135	16415213	Gualtieri G, Conner JA, Morishige DT, Moore LD, Mullet JE, Ozias-Akins P.	A segment of the apospory-specific genomic region is highly microsyntenic not only between the apomicts Pennisetum squamulatum and buffelgrass, but also with a rice chromosome 11 centromeric-proximal genomic region.	Plant Physiol.	140(3)	963-71	2006		
31136	16461379	Ytterberg AJ, Peltier JB, van Wijk KJ.	Protein profiling of plastoglobules in chloroplasts and chromoplasts. A surprising site for differential accumulation of metabolic enzymes.	Plant Physiol.	140(3)	984-97	2006		
31137	16607027	Grennan AK.	Abiotic stress in rice. An "omic" approach.	Plant Physiol.	140(4)	1139-41	2006		
31138	16607028	Mukherjee K, BEglin TR.	MEKHLA, a novel domain with similarity to PAS domains, is fused to plant homeodomain-leucine zipper III proteins.	Plant Physiol.	140(4)	1142-50	2006		
31139	16607031	Feltus FA, Singh HP, Lohithaswa HC, Schulze SR, Silva TD, Paterson AH.	A comparative genomics strategy for targeted discovery of single-nucleotide polymorphisms and conserved-noncoding sequences in orphan crops.	Plant Physiol.	140(4)	1183-91	2006		
31140	16500991	Charng YY, Liu HC, Liu NY, Hsu FC, Ko SS.	Arabidopsis Hsa32, a novel heat shock protein, is essential for acquired thermotolerance during long recovery after acclimation.	Plant Physiol.	140(4)	1297-305	2006	HSA32	Hsa32, OsPPS1 
31141	16461384	Koga J, Kubota H, Gomi S, Umemura K, Ohnishi M, Kono T.	Cholic acid, a bile acid elicitor of hypersensitive cell death, pathogenesis-related protein synthesis, and phytoalexin accumulation in rice.	Plant Physiol.	140(4)	1475-83	2006		
31142	16531481	Chehab EW, Raman G, Walley JW, Perea JV, Banu G, Theg S, Dehesh K.	Rice HYDROPEROXIDE LYASES with unique expression patterns generate distinct aldehyde signatures in Arabidopsis.	Plant Physiol.	141(1)	121-34	2006	AOS3,HPL3,AOS4	OsAOS3, HPL2, OsHPL2, OsAOS3/OsHPL2,OsHPL3, CYP74B2, OsCYP74B2,OsAOS4, CYP74A4, OsHPL1, HPL1
31143	16684934	McNally KL, Bruskiewich R, Mackill D, Buell CR, Leach JE, Leung H.	Sequencing multiple and diverse rice varieties. Connecting whole-genome variation with phenotypes.	Plant Physiol.	141(1)	26-31	2006		
31144	16531478	Sauret-GEto S, Botella-Pav} P, Flores-Prez U, Martez-Garc} JF, San Romn C, Len P, Boronat A, Rodruez-Concepcin M.	Plastid cues posttranscriptionally regulate the accumulation of key enzymes of the methylerythritol phosphate pathway in Arabidopsis.	Plant Physiol.	141(1)	75-84	2006		
31145	16760495	Grennan AK.	Gibberellin metabolism enzymes in rice.	Plant Physiol.	141(2)	524-6	2006		
31146	16632592	Drakakaki G, Marcel S, Arcalis E, Altmann F, Gonzalez-Melendi P, Fischer R, Christou P, Stoger E.	The intracellular fate of a recombinant protein is tissue dependent.	Plant Physiol.	141(2)	578-86	2006		
31147	16679424	Bari R, Datt Pant B, Stitt M, Scheible WR.	PHO2, microRNA399, and PHR1 define a phosphate-signaling pathway in plants.	Plant Physiol.	141(3)	988-99	2006	MIR399J,LTN1,MIR399F,MIR399D,MIR399A	OsmiR399j, osa-miR399j, osa-MIR399j, Os-miR399j, miR399j,LTN1, OsPHO2, PHO2.1, PHO2.2, PHO2, OsUBC35, UBC35,OsmiR399f, osa-miR399f, osa-MIR399f, Os-miR399f,OsmiR399d, osa-miR399d, osa-MIR399d, Os-miR399d, miR399d,OsmiR399a, osa-miR399a, osa-MIR399a, Os-miR399a, miR399a
31148	16896230	Li X, Duan X, Jiang H, Sun Y, Tang Y, Yuan Z, Guo J, Liang W, Chen L, Yin J, Ma H, Wang J, Zhang D.	Genome-wide analysis of basic/helix-loop-helix transcription factor family in rice and Arabidopsis.	Plant Physiol.	141(4)	1167-84	2006	BHLH6,_,_,PIL12,PIL13,BHLH7,PSH1,ICE2,PIL11,ILI1,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,BHLH116,_,_,_,_,_,_,_,PIL16,_,_,LGS1,BHLH53,BHLH142,ILI3,BHLH77,PA,RAI1,BHLH60,_,BHLH34,BHLH57,BHLH80,BHLH58,_,BHLH14,FIT,BHLH1,BHLH38,PIL14, BHLH120,PTF1,BHLH97,BHLH143,RHL1,RC,BHLH31,BHLH101,BHLH48,B2,BHLH26,_,GN8.1,BHLH148,BHLH32,BHLH083,NSP1,BHLH67,BHLH68,EAT1,SGI1,_,_,_,_,_,BHLH27,BHLH117,_,_,_,_,_,_,_,_,_,_,BHLH55,BHLH61,DPF,TDR,AN1,BHLH127,BHLH081,BHLH59,BHLH133,BHLH63,BHLH51,_,BHLH144,PS,BHLH98,BHLH54,IRO2,SD6,BHLH44,BHLH9,BLR1,BHLH2,_,LAX1,BHLH10,_,UDT1	OsbHLH006, bHLH006, OsbHLH6, bHLH6, RERJ1, OsRERJ1, bHLH35,OsbHLH004,OsbHLH155,OsPIL12, OsbHLH103, bHLH103,OsPIL1, OsPIL13, OsbHLH152, bHLH152, PIF7, OsPIF7, OsPIF4, PIF4, OsPIF1,OsbHLH007, bHLH007,Rb, Rb*, bhlh165, OsbHLH165, Rb2, OsPSH1, OsRb2,OsbHLH001, bHLH001, OsbHLH1, bHLH1, OsICE2,OsPIL11, OsbHLH102, bHLH102, PIF4, OsPIF4,OsbHLH154, bHLH154, OsILI1,OsbHLH011,OsbHLH022,OsbHLH023,OsbHLH018,OsbHLH019,OsbHLH021,OsbHLH028,OsbHLH029,OsbHLH030,OsbHLH036,OsbHLH039,OsbHLH041,OsbHLH043,OsbHLH045,OsbHLH046,OsbHLH049,OsbHLH050,OsbHLH052,OsbHLH070,OsbHLH072,OsbHLH074,OsbHLH075,OsbHLH076,OsbHLH078,OsbHLH084,OsbHLH087,OsbHLH066,OsbHLH118,OsbHLH121,OsbHLH122,OsbHLH124,OsbHLH135,OsbHLH136,OsbHLH137,OsbHLH140,OsbHLH145,OsbHLH150,OsbHLH151,OsbHLH094, bHLH094, bHLH94,OsbHLH082,OsbHLH100,OsbHLH114,OsbHLH099,OsbHLH159,OsbHLH161,OsbHLH167,OsbHLH088,  OsFBO13, FBO13,OsbHLH090,OsbHLH086, TA1,OsbHLH033, bHLH033, bHLH33, OsZFP, ZFP ,OsbHLH042, bHLH042,OsbHLH162, bHLH162,OsbHLH146, bHLH146, OsZOU-2, OsZOU2, ZOU-2, ZOU2,OsbHLH113, bHLH113,OsbHLH071, bHLH071, bHLH71,OsbHLH037, bHLH037,OsbHLH109, bHLH109,OsbHLH024,OsbHLH085, DLN227, OsDLN227,OsbHLH091, bHLH091,OsbHLH095, bHLH095,OsbHLH139, bHLH139, OsSACL3B, SACL3B,OsbHLH116, bHLH116,OsbHLH092,OsbHLH064,OsbHLH110,OsbHLH163, bHLH163, OsHLH61, HLH61,OsbHLH147, bHLH147,OsbHLH158. bHLH158,OsbHLH020, bHLH020, bHLH20,APG, OsPIL16, OsbHLH106,OsbHLH105,OsbHLH008, bHLH008, OsMYL2, MYL2, DLN6, OsDLN6, OsMYC1, MYC1,OsbHLH107, bHLH107,OsbHLH053, bHLH053, bHLH53, OsSPCH2, SPCH2,OsbHLH142, bHLH142, TIP2, OsTIP2, TIP2/TDR/bHLH142,OsILI3, OsbHLH153, bHLH153, OsBUL2, BUL2,OsbHLH077, bHLH077, bHLH77, OsNRP1, NRP1,OsbHLH015, OsbHLH15, bHLH15, OsGL3B, GL3B, OsMYC6, MYC6, OsPa, Pa, OsHLH2, HLH2,OsRAI1, OsbHLH003, bHLH003, bHLH3,OsbHLH060, bHLH060, bHLH60, OsPRI1, PRI1, OsbHLH115, bHLH115,OsbHLH073, OsbHLH73, bHLH073,OsbHLH034, bHLH034,OsbHLH057, bHLH057, OsbHLH57, bHLH57, OsPRI4, PRI4,OsbHLH080, bHLH080, OsBCL1, BCL1,OsbHLH058, bHLH058, bHLH58, OsPRI2, PRI2,OsbHLH012, bHLH012, bHLH12, OsRb, Rb, Rb1, OsRb1,OsbHLH014, bHLH014, bHLH14, BEAR1, OsBEAR1,OsbHLH156, OsFIT/OsbHLH156, OsFIT, bHLH156, OsIROP1, IROP1,OsbHLH1, bHLH1, OsbHLH062, bHLH062, bHLH62 ,OsbHLH038, bHLH038, OsbHLH38,OsPIL14, OsbHLH104, bHLH104, OsPIF14, PIF14, OsPIF14alpha, OsPIF14beta,OsbHLH120, bHLH120,OsPTF1, OsbHLH096, bHLH96,OsbHLH097, bHLH097, OsbHLH097,OsbHLH143, OsbHLH130, bHLH130,OsbHLH115, bHLH115, OsRHL1,Rc, OsbHLH017, OsbHLH17, SD7-1, qSD7-1/qPC7, OsGL3C, GL3C,OsbHLH031, bHLH031, bHLH31, BIM2, OsBIM2,OsbHLH101, bHLH101, OsPIF1, PIF1,OsbHLH048, bHLH048, bHLH48,OsbHLH016, Kala4, OsKala4, OSB2, OsB2,OsbHLH026, bHLH026, bHLH26,OsbHLH138, bHLH138, OsPIF4, PIF4, OsSACL2, SACL2,OsFBH1, OsbHLH112, DLN213, OsDLN213, Gn8.1, OsGn8.1,OsbHLH148, bHLH148,OsbHLH032, bHLH032, OsbHLH32, bHLH32, OsBIM1, BIM1,OsbHLH083, bHLH083, CRPG311, OsCRPG311,OsbHLH069, bHLH069, bHLH69, OsbHLH69, OsNSP1,OsbHLH067, bHLH067, bHLH67, OsbHLH67,OsbHLH068, bHLH068, bHLH68, OsbHLH68,OsEAT1, OsbHLH141, EAT1/DTD1, bHLH141, DTD1, DTD, DLN120, OsDLN120,OsbHLH111, bHLH111, HBP1, OsHBP1, OsSGI1,OsbHLH149, bHLH149, DLN30, OsDLN30, OsMYC4, MYC4,OsbHLH166, bHLH166,OsbHLH047, bHLH047,OsbHLH040, bHLH40,OsbHLH134, bHLH134, DLN100, OsDLN100,OsbHLH027, OsbHLH27, bHLH027, bHLH27,OsbHLH117, bHLH117,OsbHLH125, bHLH125, OsRSL1, RSL1 ,OsbHLH126, bHLH126, OsRSL2, RSL2,OsbHLH089, bHLH089, bHLH89,OsbHLH128, bHLH128, OsRSL6, RSL6, DLN190, OsDLN190,OsbHLH157, bHLH157,OsbHLH129, bHLH129, OsRSL4, RSL4, DLN79, OsDLN79,OsLF, LF, OsbHLH119,OsbHLH160, bHLH160, SIP19, OsSIP19,OsbHLH130, bHLH130, OsRSL9, RSL9, DLN264, OsDLN264,OsbHLH132, bHLH132, OsRSL7, RSL7,OsbHLH055, bHLH055, bHLH55, OsMUTE, MUTE,OsbHLH061, OsbHLH61, bHLH061, bHLH61,OsbHLH025, bHLH025, bHLH25,tdr, OsbHLH005, bHLH005, OsbHLH5, bhlh5, TDR1, OsTDR, OsTDR1, OsMYC5, MYC5,An-1, OsbHLH093, RAE1, An-1/RAE1, RAE1/An-1, OsRAE1, OsAn-1, OgRAE1,OsbHLH127, bHLH127, OsRSL3, RSL3,OsbHLH081, bHLH081, OsBC1, BC1,OsbHLH059, bHLH059, OsbHLH59, bHLH59, OsPRI3, PRI3,OsbHLH133, bHLH133, OsRSL8, RSL8,OsIRO3, IRO3, OsbHLH063, bHLH063, bHLH63,OsbHLH051, bHLH051, bHLH51, OsFAMA, FAMA,OsbHLH035, bHLH035, OsbHLH35, bHLH35, bHLH107,OsbHLH144, OsEnS-65, bHLH144, EnS-65, OsZOU-1, OsZOU1, ZOU-1, ZOU1,Ra*, bhlh13, OsbHLH013, OsbHLH13, Ra, OSB1, Ra1, OsGL3A, GL3A, OsB2, OsMYC7, MYC7, OsPs, Ps, OsHLH1, HLH1,OsbHLH098, bHLH098, bHLH98, OsbHLH98,OsbHLH054, bHLH054, bHLH54, OsSPCH1, SPCH1, SPCH,OsIRO2, OsbHLH056, bHLH056, bHLH56, OsbHLH56,OsbHLH108, OsbHLH108/SPT, bHLH108, SPT, OsSPT, OsSD6,OsbHLH044, bHLH044, bHLH44, OsbHLH96, bHLH96, bHLH096,OsbHLH009, bHLH009, OsMYC2, MYC2,OsbHLH079, OsbHLH79, bHLH079, bHLH79, OsBLR1, OsBCL2, BCL2,OsbHLH002, bHLH002, OsbHLH2, bHLH2, OsICE1, ICE1, OsbHLH002/OsICE1,OsbHLH131, bHLH131, OsRSL5, RSL5, DLN93, OsDLN93,lax, lax(lx), lx, OsbHLH123, bHLH123, OsLAX1, BOS1, OsBOS1,OsICE1, ICE1, OsbHLH010, bHLH010, OsMYL1, MYL1, bHLH116, OsMYC3, MYC3 ,OsbHLH065, OsbHLH65,Udt1, bHLH164, OsUDT1, OsbHLH164 
31149	16861570	Travella S, Klimm TE, Keller B.	RNA interference-based gene silencing as an efficient tool for functional genomics in hexaploid bread wheat.	Plant Physiol.	142(1)	6-20	2006		
31150	16844829	Arrighi JF, Barre A, Ben Amor B, Bersoult A, Soriano LC, Mirabella R, de Carvalho-Niebel F, Journet EP, Ghardi M, Huguet T, Geurts R, DariEJ, RougP, Gough C.	The Medicago truncatula lysine motif-receptor-like kinase gene family includes NFP and new nodule-expressed genes.	Plant Physiol.	142(1)	265-79	2006		
31151	16891544	Pareek A, Singh A, Kumar M, Kushwaha HR, Lynn AM, Singla-Pareek SL.	Whole-genome analysis of Oryza sativa reveals similar architecture of two-component signaling machinery with Arabidopsis.	Plant Physiol.	142(2)	380-97	2006	PRR73,ERS2,RR25,HST1,RR8,RR27,_,PHYA,RR4,ETR3,RR10,LHD3,RR3,RR33,RR23,PHP1,PRR95,PHP2,AHP1,_,DLC1,_,HD2,HK2,RR21,RR29,AHP2,PHP3,RR12,ERS1,HK1,PHYB,RR6,RR11,HK3,_,CKT1,RR13,RR5,ETR4,RR9,PRR59,TOC1,RR2,RR26,RR1,ETR2,RR7,HK4,HK5,RR28	OsPRR73, Os-PRR73, Prr3, OsPRR3, OsRRA20, OsCCT11, CCT11,OS-ERS2, OsERS2, OsERS2a, OsERS2b, OsERS2c,OsRR25, Rrb3, Orr5, OsORR5, OsRR21, OsRRB3,RR22, OsRR22, Rrb4, Orr2, OsRR20, OsRRB4, OsHST1,rr8, OsRR8, Rra13, OsRR15, RR15, OsRRA13,OsRR27, Rra16, OsPRR5, OsRRA16,OsRR41, RR41, Rra14, OsRR14, RR14, OsRRA14, OsEnS-54,phyA, PHYA* (phyA), PHYA*, Phya, PHY18, phy 18, OsPHYA ,rr4, OsRR4, Rra3, OsRRA3,OsETR3, OsERS4, OS-ETR3, OsETR3a, OsETR3b, PK2, OsPK2, OsETR2;1, ETR2;1,OsRR10, Rra2, OsRRA2, RR2,PHYC, OsPHYC, OsPHYCa, OsPHYCb, OsLHD3,OSRR3, OsRR3, rr3, Rra7, OsRRA7,OsRR33, Rra19, OsRRA19,OsRR23, Rrb5, Orr3, OsRR18, RR18, OsRRB5,OsPHP1, Hpt1, OsHP3, sHP3, OsHpt1,OsPRR95, Os-PRR95, Prr2, OsPRR2, OsCCT33,OsPHP2, Hpt4, OsHP5, HP5, OsHpt4, OsHP05,OHP1, HPt, OsAHP1, Hpt2, Ohp1, OsHP2, HP2, OsHpt2, OsHPt2, OsHP02,OsRR42, Rra15, OsRR13, OsRRA15,RR24, OsRR24, Rrb2, Orr4, OsRR17, RR17, OsRRB2, OsRR24/LEPTO1, OsLEPTO1, LEPTO1, OsDLC1,OsPRR10, Rra18, OsRRA18,Hd2(t), Hd2, qHD2(t), OsPRR37, Os-PRR37, PRR37, Prr4, OsPRR4, DTH7, Os DTH7, OsCCT28, CCT28, Ghd7.1, PRR37/Hd2, EH7-2, EH7-2/Hd2, Hd2/PRR37, PRR37-1a, PRR37-1b, PRR37-1c, PRR37-2a, PRR37- 2, HD7.2,OHK1, HK, OsHK2, Ohk1,OsRR21, Rrb1, Orr1, OsRR19, RR19, OsRRB1, ORR1,OsRR29, Rrb7, OsPRR4, OsRRB7,OHP2, HPt, OsAHP2 Hpt3, Ohp2, OsHP1, HP1, OsHpt3, OsHP01,OsPHP3, Hpt5, OsHP4, HP4, OsHpt5, OsHpt5a, OsHpt5b, OsHpt5c,OsRR12, Rra11, OsRR8, RR8, OsRRA11,OS-ERS1, OsERS1, OsERS1a, OsERS1b, OSERS,OsHK1, OHK1, MHZ1/OsHK1, MHZ1, OsMHZ1,phyB, PHYB1, OsPHYB, OsphyB, OsYHB, YHB, OsPHYB/OsYHB,OsRR6, rr6, Rra6, OsRRA6,OsRR11, Rra8, OsRRA8, RR8,OHK2, HK, OsHK3, Ohk, Crl2, Ohk2, OsHK3b, OsHK03,OsPRR12, Rra17, OsRRA17, OsEnS-61,OHK5, HK, OsHK6, HK6, Crl1a, Ohk5, OsHK1, OsCKT1 ,OsRR13, Rra12, OsRR12, OsRRA12, RR12,rr5, OsRR5, Rra4, OsRRA4,PK3, OsPK3, OsETR4, OS-ETR4,OsRR9, Rra1, OsRRA1, OsRR10, RR10,OsPRR59, Os-PRR59, Prr5, OsPRR5, OsCCT38, CCT38,OsTOC1, OsPRR1, Os-PRR1, PRR1, OsRRA21, OsCCT07,rr2, Osrr2, OsRR2, Rra10, OsRRA10,OsRR26, Rrb6, Orr6, OsRR16, RR16, OsRRB6,rr1, OsRR1, Rra9, OsRRA9,etr2, OsPK1, PK1, ERL1, OsETR2, OsERL1, OS-ETR2, OsERS3,rr7, OsRR7, Rra5, OsRRA5,OHK4, HK, OsHK4, Crl1b, Ohk4,OHK3, HK, OsHK5, Crl3, Ohk3, OsHK2,OsRR28, Rra22, OsPRR3, OsRRA22
31152	16905665	Pujar A, Jaiswal P, Kellogg EA, Ilic K, Vincent L, Avraham S, Stevens P, Zapata F, Reiser L, Rhee SY, Sachs MM, Schaeffer M, Stein L, Ware D, McCouch S.	Whole-plant growth stage ontology for angiosperms and its application in plant biology.	Plant Physiol.	142(2)	414-28	2006		
31153	16920874	Xu P, Zhang Y, Kang L, Roossinck MJ, Mysore KS.	Computational estimation and experimental verification of off-target silencing during posttranscriptional gene silencing in plants.	Plant Physiol.	142(2)	429-40	2006		
31154	16920880	Cao D, Cheng H, Wu W, Soo HM, Peng J.	Gibberellin mobilizes distinct DELLA-dependent transcriptomes to regulate seed germination and floral development in Arabidopsis.	Plant Physiol.	142(2)	509-25	2006	SLR1	slr1-1, slr1, slr, GAI, OsGAI, OsSLR1, Os SLR1, OsRGA1, OsGRAS-18, OsGRAS-18, GRAS-18, GRAS18, SLR-1
31155	16905666	Wissuwa M, Ismail AM, Yanagihara S.	Effects of zinc deficiency on rice growth and genetic factors contributing to tolerance.	Plant Physiol.	142(2)	731-41	2006		
31156	17012406	Barro RM, Peres A, Droual AM, De Veylder L, Nguyen le SL, De Wolf J, Mironov V, Peerbolte R, Beemster GT, InzD, Broekaert WF, Frankard V.	The cyclin-dependent kinase inhibitor Orysa;KRP1 plays an important role in seed development of rice.	Plant Physiol.	142(3)	1053-64	2006	KRP2,KRP3,KRP5,KRP4,KRP1	OsKRP2, OsiICK2, Orysa;KRP2, OrysaICK2, Orysa;ICK2,OsiICK3, Orysa;KRP3, OrysaICK3, Orysa;ICK3,OsiICK5, Orysa;KRP5, OrysaICK5, Orysa;ICK5, OsKRP5, OsICK5, ICK5 ,OsiICK6, Orysa;KRP4, OrysaICK6, Orysa;ICK6, OsKRP4, OsICK6, ICK6,OsiICK1, Orysa;KRP1, OrysaICK1, Orysa;ICK1, CDKI, OsICK1, ICK1, OsKRP1
31157	16998090	Jang CS, Kamps TL, Skinner DN, Schulze SR, Vencill WK, Paterson AH.	Functional classification, genomic organization, putatively cis-acting regulatory elements, and relationship to quantitative trait loci, of sorghum genes with rhizome-enriched expression.	Plant Physiol.	142(3)	1148-59	2006		
31158	17012402	Iwai T, Miyasaka A, Seo S, Ohashi Y.	Contribution of ethylene biosynthesis for resistance to blast fungus infection in young rice plants.	Plant Physiol.	142(3)	1202-15	2006	ACS2,ACS4,ACO7,PII,ACS3,ACS5,ACS1,ACO1,PII2,ACO2,ACO5,ACO3,ACO4,SSG6	OsACS2, Os-ACS2,OsACS4, OS-ACS4,OsACO7,Pi i, Pii, Pi-i, Pii(t),ACC3*, ACC3, OsACS3, OS-ACS3, OsACC3,OsACS5, OS-ACS5, OsBphi008a,ACC1*, OsACS1, Os-ACS1, ACC1, OsACC1,OsACO1, ACO,Pi i2, Pii2, Pii2(t),OsACO2, OsACO1,OsACO5, 2-ODD14, Os2-ODD14, 2ODD14, Os2ODD14,OsACO3, ACO2, OsACO2,OsACO4,OsACS6, ACS6
31159	16980566	Yang X, Tuskan GA, Cheng MZ.	Divergence of the Dof gene families in poplar, Arabidopsis, and rice suggests multiple modes of gene evolution after duplication.	Plant Physiol.	142(3)	820-30	2006		
31160	16998087	Lease KA, Walker JC.	The Arabidopsis unannotated secreted peptide database, a resource for plant peptidomics.	Plant Physiol.	142(3)	831-8	2006		
31161	16980567	Miao Y, Yan PK, Kim H, Hwang I, Jiang L.	Localization of green fluorescent protein fusions with the seven Arabidopsis vacuolar sorting receptors to prevacuolar compartments in tobacco BY-2 cells.	Plant Physiol.	142(3)	945-62	2006		
31162	17041027	Shen W, Hanley-Bowdoin L.	Geminivirus infection up-regulates the expression of two Arabidopsis protein kinases related to yeast SNF1- and mammalian AMPK-activating kinases.	Plant Physiol.	142(4)	1642-55	2006		
31163	17071645	Huang S, Spielmeyer W, Lagudah ES, James RA, Platten JD, Dennis ES, Munns R.	A sodium transporter (HKT7) is a candidate for Nax1, a gene for salt tolerance in durum wheat.	Plant Physiol.	142(4)	1718-27	2006	HKT7	OsHKT7, OsHKT1;4, HKT1;4
31164	17098858	Brady SM, Song S, Dhugga KS, Rafalski JA, Benfey PN.	Combining Expression and Comparative Evolutionary Analysis. The COBRA Gene Family.	Plant Physiol.	143(1)	172-87	2007		
31165	17098851	Murcha MW, Elhafez D, Lister R, Tonti-Filippini J, Baumgartner M, Philippar K, Carrie C, Mokranjac D, Soll J, Whelan J.	Characterization of the preprotein and amino Acid transporter gene family in Arabidopsis.	Plant Physiol.	143(1)	199-212	2007		
31166	17098850	Nikolic M, Nikolic N, Liang Y, Kirkby EA, Rmheld V.	Germanium-68 as an adequate tracer for silicon transport in plants. Characterization of silicon uptake in different crop species.	Plant Physiol.	143(1)	495-503	2007		
31168	17259261	Cao, XiaoFeng	SDG714, a Histone H3K9 Methyltransferase, Is Involved in Tos17 DNA Methylation and Transposition in Rice.	Plant Cell	19(1)	9-22	2007	SDG714	OsSDG714, OsSET5, OsSUVH4
31169	17322409	Valent, Barbara	Roles for Rice Membrane Dynamics and Plasmodesmata during Biotrophic Invasion by the Blast Fungus.	Plant Cell	19(2)	706-724	2007		
31171	16384901	Sopory, S.K.	Transgenic Tobacco Overexpressing Glyoxalase Pathway Enzymes Grow and Set Viable Seeds in Zinc-Spiked Soils.	Plant Physiol.	140(2)	613-623	2006		
31172	17142475	Rhee, Seung Y.	The Plant Structure Ontology, a Unified Vocabulary of Anatomy and Morphology of a Flowering Plant.	Plant Physiol.	143(2)	587-599	2007		
31173	17259288	Kim CM, Park SH, Je BI, Park SH, Park SJ, Piao HL, Eun MY, Dolan L, Han CD	OsCSLD1, a Cellulose Synthase-Like D1 Gene, Is Required for Root Hair Morphogenesis in Rice.	Plant Physiol.	143(3)	1220-230	2007	CSLD1	csld1, OsCSLD1, OsCslD1
31174	17220362	Cosgrove, Daniel J.	Recent Proliferation and Translocation of Pollen Group 1 Allergen Genes in the Maize Genome.	Plant Physiol.	143(3)	1269-1281	2007		
31175	17259286	Ma, Jian Feng	Spatial Distribution and Temporal Variation of the Rice Silicon Transporter Lsi1.	Plant Physiol.	143(3)	1306-1313	2007	LSI1	lsi1, NIP2-1, OsNIP2;1, NIP2;1, OsLsi1, lsi(t), OsNIP2.1/OsLsi1/OsSIIT1, OsNIP2.1, NIP2.1
31176	17220367	Yamamoto Y, Kamiya N, Morinaka Y, Matsuoka M, Sazuka T.	Auxin Biosynthesis by the YUCCA Genes in Rice.	Plant Physiol.	143(3)	1362-1371	2007	YUCCA7,YUCCA1,YUCCA5,YUCCA4,YUCCA6,YUCCA2,YUCCA3	OsYUCCA7, OsYUC7, OsYUC5, YUC5, YUC7,OsYUCCA1, OsYUC1, YUC1,OsYUCCA5, OsYUC5, YUC5,OsYUCCA4, OsYUC4, YUC4, YUCCA6, OsYUCCA6,OsYUCCA6, OsYUC6, YUC6,OsYUCCA2, OsYUC2, YUC2,OsYUCCA3, OsYUC3, YUC3
31177	17293439	Jain M, Nijhawan A, Arora R, Agarwal P, Ray S, Sharma P, Kapoor S, Tyagi AK, Khurana JP.	F-Box Proteins in Rice. Genome-Wide Analysis, Classification, Temporal and Spatial Gene Expression during Panicle and Seed Development, and Regulation by Light and Abiotic Stress.	Plant Physiol.	143(4)	1467-1483	2007	_,_,_,_,_,_,_,_,_,_,FBOX316,_,_,_,_,_,EP3,_,_,_,_,TLP2,LC4,TLP3,FBOX349,_,_,_,_,_,TLP8,_,_,_,_,_,_,_,_,_,_,_,ZTL1,_,_,_,FBOX291,_,_,_,_,_,_,_,FBOX206,_,D3,_,FBOX394,_,_,_,FBOX33,_,_,_,_,_,COI1B,_,BRT1,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,FBOX314,COI1,FBOX130,FBOX58,FBOX2,TLP9,TLP10,TLP6,FBOX516,TLP1,WCR1,_,_,_,_,_,_,_,_,_,_,_,_,ZTL2,_,_,SAF,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,FKF1,FBOX72,_,TLP5,APO1,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,TIR1,TLP7,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,TLP11,TLP12,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,TLP13,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,TLP14,_,_,_,_,_,_,_,_,_,_,_,FBOX11,_,FBOX396,_,_,FBOX6,_,_,_	OsFbox182, Os_F0223, F-box118,  OsFBX118, FBX118,OsFbox592, Os_F0128, Fbox-4,  OsFBX417, FBX417,OsFbox007, OsFbox7, Os_F0351,OsKMD1, OsFbox074, OsFbox74, Os_F0323,  OsFBK4, FBK4,OsFbox581, Os_F0649,OsWD40-110, OsFbox233, Os_F0069,  OsFBW1, FBW1,Os_F0794, OsFBDUF48, FBDUF48, PEG3,  OsFBDUF48, FBDUF48,OsFbox003, OsFbox3, Os_F0209, OsFBX3,  OsFBX3, FBX3,OsFbox490, Os_F0091,OsFbox004, OsFbox4, Os_F0387,  OsFBDUF1, FBDUF1,OsFbox316, Fbox316, Os_F0624, OsEBF1, EBF1,  OsFBL30, FBL30,OsFbox012, OsFbox12, Os_F0539, OsFBX8,Os_F0720, FBL55, OsFBL55, OsAFB3, AFB3,  OsFBL55, FBL55,IBF1, OsFBX310, FBX310,  OsFBX310, FBX310,OsFbox625, Os_F0458,OsFbox008, OsFbox8, Os_F0329,  OsFBDUF3, FBDUF3,EP3/LP, LP, OsLP, OsFbox076, OsFbox76, Os_F0106, OsEP3,  OsFBK5, FBK5,OsFbox009, OsFbox9, Os_F0616,  OsFBDUF4, FBDUF4,OsFbox552, Os_F0216,  OsFBL52, FBL52,OsFbox017, OsFbox17, Os_F0392,  OsFBX14, FBX14,OsFbox472, Fbox472, Os_F0599, OsFBX313, FBX313,  OsFBX313, FBX313,OsTLP12, OsTLP2, OsFbox039, OsFbox39, Os_F0683,  OsFBT2, FBT2,OsFbox053, OsFbox53, Os_F0309, OsLC4,  OsFBX32, FBX32,OsTLP5, TLP5, OsTLP3, OsFbox050, OsFbox50, Os_F0396,  OsFBT3, FBT3,OsFbox349, Os_F0252, OsFBA2, FBA2,  OsFBA2, FBA2,OsFbox018, OsFbox18, Os_F0259,  OsFBX15, FBX15,OsFbox557, Fbox557, Os_F0256,  OsFBX389, FBX389,OsFbox020, OsFbox20, Os_F0674,  OsFBX16, FBX16,OsFbox640, Fbox640, Os_F0395, OsFBX438, FBX438,  OsFBX438, FBX438,OsFbox021, OsFbox21, Os_F0117,OsTLP1, OsTLP1a, OsTLP1b, OsTLP1c, OsTLP8, OsFbox259, Os_F0415,  OsFBT7, FBT7,OsFbox022, OsFbox22, Os_F0366,  OsFBD2, FBD2,OsFbox045, OsFbox45, Os_F0307,  OsFBX27, FBX27,OsFbox024, OsFbox24, Os_F0087,OsFbox502, Os_F0060,OsRALyase, OsFbox090, OsFbox90, Os_F0337,  OsFBO11, FBO11,OsFbox481, Os_F0362, FBX322, OsFBX322,  OsFBX322, FBX322,OsKMD3, OsFbox096, OsFbox96, Os_F0169,  OsFBK8, FBK8,OsFbox412, Fbox412, Os_F0356,  OsFBX266, FBX266,MAIF1, OsFbox104, Os_F0528,  OsFBDUF13, FBDUF13,OsFbox141, Os_F0122, OsFBX86, FBX86,OsDRF1, OsFbox209, Os_F0001,  OsFBX133, FBX133,OsZTL1, OsFbox066, OsFbox66, Os_F0484, OsLKP2, LKP2,  OsFBO8, FBO8,OsFbox304, Os_F0494,  OsFBX192, FBX192,OsFbox456, Fbox456, Os_F0543,  OsFBX296, FBX296,OsFbox594, Os_F0295, Fbox-1,  OsFBX419, FBX419,OsFbox291, Os_F0516,  OsFBX185, FBX185,OsFBX270, OsKIX_5, OsFbox419, Os_F0547, OsEnS-118,  OsFBX270, FBX270,OsFbox232, Os_F0576, Ctb1, OsCtb1,  OsFBK15, FBK15,OsFBX283, OsKIX_6, OsFbox434, Os_F0157,  OsFBX283, FBX283,OsFbox509, Os_F0258, OsADF, ADF,  OsFBX345, FBX345,OsFBX289, OsKIX_7, OsFbox442, Os_F0407, OsEnS-121,  OsFBX289, FBX289,OsFbox183, Fbox183, Os_F0203, F-box119,  OsFBX119, FBX119,OsWD40-184, OsFbox571, Os_F0380,  OsFBW2, FBW2,OsAFB2, ABF2, OsAFB2-1, OsAFB2-2, OsFbox206, Os_F0492, OsTIR1, TIR1,  OsFBL16, FBL16,OsFbox591, Os_F0435, Fbox-5,  OsFBX416, FBX416,d3, dwf3, D3/OsMAX2, Os_F0760, SOL1, OsORE9, ORE9, MAX2, OsRFPH2-10, RFPH2-10, OsD3,  OsFBL27, FBL27,OsKMD4, OsFbox596, Os_F0436,  OsFBK25, FBK25,OsFbox394, Os_F0722,  OsFBX255, FBX255,OsFBX234, OsFbox369, Os_F0191,  OsFBX234, FBX234,OsFbox341, Fbox341, Os_F0215,  OsFBL34, FBL34,OsFbox013, OsFbox13, Os_F0590, OsFBX10,  OsFBX10, FBX10,OsFbox033, OsFbox33, Fbox33, Os_F0114, OsFBK1, FBK1 ,  OsFBK1, FBK1,OsFbox015, OsFbox15, Os_F0481, OsFBX12,  OsFBX12, FBX12,OsFbox005, OsFbox5, Os_F0747, OsFBX4,  OsFBX4, FBX4,OsFbox016, OsFbox16, Os_F0471, OsFBX13,  OsFBX13, FBX13,OsFbox230, Os_F0308,  OsFBX150, FBX150,OsFbox026, OsFbox26, Os_F0242,  OsFBX18, FBX18,OsCOI1b, COI1b, OsCOI1H, COI1H, OsFbox260, Fbox260, Os_F0646,  OsFBL23, FBL23, OsCOl-1, COl-1,OsFbox027, OsFbox27, Os_F0595,  OsFBL1, FBL1,OsFbox189, Os_F0133,  OsFBX125, FBX125, OsBRT1,OsFbox028, OsFbox28, Os_F0158,  OsFBL2, FBL2,OsFbox032, OsFbox32, Os_F0271,  OsFBX21, FBX21,OsFbox040, OsFbox40, Os_F0476,  OsFBX26, FBX26,OsFbox031, OsFbox31, Os_F0326,  OsFBX20, FBX20,OsFbox030, OsFbox30, Os_F0577,  OsFBX19, FBX19,OsFbox035, OsFbox35, Os_F0556,  OsFBX22, FBX22,OsFbox036, OsFbox36, Os_F0051,  OsFBX23, FBX23,OsFbox037, OsFbox37, Os_F0332,  OsFBX24, FBX24,OsFbox038, OsFbox38, Os_F0519,OsFbox041, OsFbox41, Os_F0730,OsFbox042, OsFbox42, Os_F0608,OsFbox043, OsFbox43, Os_F0563,  OsFBDUF8, FBDUF8,OsFbox044, OsFbox44, Os_F0491,  OsFBL3, FBL3,OsFbox046, OsFbox46, Os_F0609,  OsFBX28, FBX28,OsFbox047, OsFbox47, Os_F0754,  OsFBX29, FBX29,OsFbox048, OsFbox48, Os_F0202,  OsFBX30, FBX30,OsFbox049, OsFbox49, Os_F0364,  OsFBL5, FBL5,OsFbox051, OsFbox51, Os_F0330,  OsFBX31, FBX31,OsFbox054, OsFbox54, Os_F0420,OsFbox055, OsFbox55, Os_F0463,  OsFBDUF10, FBDUF10,OsFbox056, OsFbox56, Os_F0469,  OsFBX33, FBX33,OsFbox057, OsFbox57, Os_F0570,  OsFBDUF11, FBDUF11,OsFbox059, OsFbox59, Os_F0692,  OsFBL6, FBL6,OsFbox060, OsFbox60, Os_F0125,  OsFBK2, FBK2,OsFbox061, OsFbox61, Os_F0473,  OsFBDUF12, FBDUF12,OsFbox062, OsFbox62, Os_F0282,  OsFBX34, FBX34,OsFbox063, OsFbox63, Os_F0090,  OsFBX35, FBX35,OsFbox064, OsFbox64, Os_F0285,  OsFBX36, FBX36,OsFbox065, OsFbox65, Os_F0311,  OsFBX37, FBX37,OsFbox068, OsFbox68, Os_F0346,  OsFBLD1, FBLD1,OsFbox069, OsFbox69, Os_F0227,  OsFBD6, FBD6,OsFbox070, OsFbox70, Os_F0151,  OsFBX39, FBX39,OsFbox071, OsFbox71, Os_F0306,  OsFBA1, FBA1,JMJ711, OsFbox149, Os_F0347, DLN88, OsDLN88,  OsFBO14, FBO14,OsFbox073, OsFbox73, Os_F0359,  OsFBK3, FBK3,OsFbox075, OsFbox75, Os_F0514,  OsFBX40, FBX40,OsFbox077, OsFbox77, Os_F0558,OsFbox078, OsFbox78, Os_F0445,OsFbox079, OsFbox79, Os_F0641,  OsFBX43, FBX43,OsKMD2, KMD2, OsFbox314, Fbox314, Os_F0507, OsFBK16, FBK16,OsCOI1a, OsCOI1, Os_F0728, COI1a, F0728,  OsFBL4, FBL4,OsFBK12, OsFbox130, Os_F0642,  OsFBK12, FBK12,OsFbox058, OsFbox58, Os_F0591, DLN37, OsDLN37, CHR707, OsCHR707,  OsFBO7, FBO7,OsFbox002, OsFbox2, OsH2B.6, H2B.6,OsTLP10, TLP10, OsTLP10a, OsTLP10b, OsTLP9, OsFbox267, Os_F0560,  OsFBT9, FBT9,OsTLP11, TLP11, OsTLP10, OsFbox278, Os_F0631,  OsFBT10, FBT10,OsTLP14, TLP14, OsTLP6, OsFbox139, Os_F0681,  OsFBT5, FBT5,OsFbx352, OsFbox516, Fbx352, Fbox516, Os_F0046,  OsFBX352, FBX352,OsTLP9, TLP9, OsTLP9a, OsTLP9b, OsTLP9c, OsTLP1, OsFbox034, OsFbox34, Os_F0675,  OsFBT1, FBT1,OsFbox052, OsFbox52, Os_F0755, OsWCR1,  OsFBO2, FBO2,OsFbox080, OsFbox80, Os_F0533,  OsFBX44, FBX44,OsFbox081, OsFbox81, Os_F0375,  OsFBX45, FBX45,OsFbox082, OsFbox82, Os_F0509,  OsFBX46, FBX46,OsFbox083, OsFbox83, Os_F0360,  OsFBX47, FBX47,OsFbox084, OsFbox84, Os_F0452,  OsFBK6, FBK6,OsFbox086, OsFbox86, Os_F0482,  OsFBX48, FBX48,OsFbox087, OsFbox87, Os_F0536,  OsFBL8, FBL8,OsFbox088, OsFbox88, Os_F0475,  OsFBX49, FBX49,OsFbox091, OsFbox91, Os_F0517,  OsFBK7, FBK7,OsFbox092, OsFbox92, Os_F0704,  OsFBX51, FBX51,OsFbox093, OsFbox93, Os_F0270,  OsFBD7, FBD7,OsFbox094, OsFbox94, Os_F0336,  OsFBL9, FBL9,OsZTL2, OsFbox325, Os_F0374, ZTL1 ,  OsFBO9, FBO9,OsFbox023, OsFbox23, Os_F0211, OsSTA20,  OsFBD3, FBD3,OsFbox095, OsFbox95, Os_F0274, OsSTA64,  OsFBX52, FBX52,SaF, OsFbox019, OsFbox19, Os_F0070,  OsFBD1, FBD1,OsFbox097, OsFbox97, Os_F0402,  OsFBX53, FBX53,OsFbox098, OsFbox98, Os_F0174,  OsFBK9, FBK9,OsFbox099, OsFbox99, Os_F0180,  OsFBX466, FBX466,OsFbox101, Os_F0678,OsFbox102, Os_F0177,  OsFBO12, FBO12,OsFbox103, Os_F0039,  OsFBX57, FBX57,OsFbox105, Os_F0549,  OsFBX58, FBX58,OsFbox106, Os_F0496,  OsFBD8, FBD8,OsFbox108, Os_F0236,  OsFBX60, FBX60,OsFbox110, Os_F0551,  OsFBX61, FBX61,OsFbox109, Os_F0628,  OsFBK10, FBK10,OsFbox111, Os_F0005,  OsFBX62, FBX62,OsFbox112, Os_F0657,OsFbox113, Os_F0234,  OsFBX63, FBX63,OsFbox114, Os_F0103,  OsFBX64, FBX64,OsFbox115, Os_F0639,  OsFBX65, FBX65,OsFbox116, Os_F0291,  OsFBX66, FBX66,OsFbox120, Os_F0441,  OsFBX70, FBX70,OsFbox121, Os_F0352,OsFbox122, Os_F0288,  OsFBX72, FBX72,OsFbox123, Os_F0289,  OsFBX73, FBX73,OsFbox124, Os_F0262,  OsFBX74, FBX74,OsFbox128, Os_F0506,  OsFBL10, FBL10,OsFbox127, Os_F0532,  OsFBX76, FBX76,OsFbox131, Os_F0292,  OsFBX77, FBX77,OsFbox135, Os_F0341,  OsFBX81, FBX81,OsFbox137, Os_F0544,  OsFBX82, FBX82,OsFbox136, Os_F0187,OsFbox134, Os_F0443,  OsFBX80, FBX80,OsFbox133, Os_F0449,  OsFBX79, FBX79,OsFbox132, Os_F0228,  OsFBX78, FBX78,OsFbox138, Os_F0340,  OsFBX83, FBX83,OsFbox140, Os_F0065,OsFbox142, Os_F0023,  OsFBX87, FBX87,OsFbox100,  OsFBX55, FBX55,OsFbox067, OsFbox67, Os_F0477,  OsFBX38, FBX38,OsFbox143, Os_F0129,  OsFBX88, FBX88,OsFbox152, Os_F0251,  OsFBX95, FBX95,OsFbox154, Os_F0130,  OsFBDUF15, FBDUF15,OsFbox158, Os_F0008,  OsFBX98, FBX98,OsFbox159, Os_F0006,  OsFBX99, FBX99,OsFbox160, Os_F0017,OsFbox144, Os_F0237,  OsFBX89, FBX89,OsFbox145, Os_F0026,  OsFBX90, FBX90,OsFbox146, Os_F0179,  OsFBX91, FBX91,OsFbox147, Os_F0266,  OsFBX92, FBX92,OsFbox148, Os_F0426,  OsFBX93, FBX93,OsFbox150, Os_F0123,  OsFBX94, FBX94,OsFbox151, Os_F0222,  OsFBK13, FBK13,OsFbox155, Os_F0503,  OsFBX96, FBX96,OsFbox234, Os_F0170,  OsFBL20, FBL20,OsFbox157, Os_F0188,  OsFBX97, FBX97,OsFbox161, Os_F0076,  OsFBX101, FBX101,OsFbox162, Os_F0012,OsFbox163, Os_F0009,  OsFBX103, FBX103,OsFbox089, OsFbox89, Os_F0377,  OsFBX50, FBX50,OsFbox118, Os_F0460,  OsFBX68, FBX68,  OsFBX69, FBX69,OsFbox119, Os_F0693,OsFbox125, Os_F0403,  OsFBX75, FBX75,OsFbox164, Os_F0040,  OsFBX104, FBX104,OsFbox167, Os_F0244,OsFbox168, Os_F0132,  OsFBO16, FBO16,OsFbox169, Os_F0378,  OsFBDUF16, FBDUF16,OsFbox170, Os_F0296,  OsFBDUF17, FBDUF17,OsFbox171, Os_F0153,  OsFBX108, FBX108,OsFbox172, Os_F0303,  OsFBX109, FBX109,OsFbox173, Os_F0094,  OsFBX110, FBX110,OsFbox174, Os_F0714,  OsFBX111, FBX111,OsFbox609, Os_F0370, OsFKF1,  OsFBO10, FBO10,OsFbox072, OsFbox72, Fbox72, Os_F0508, OsEBF2, EBF2,  OsFBL7, FBL7,OsFbox117, Os_F0679,  OsFBX67, FBX67,OsTLP8, LP8, OsTLP8a, OsTLP8b, OsTLP8c, OsTLP8d, OsTLP5, OsFbox107, Os_F0446,  OsFBT4, FBT4,apo1(t), apo1, SCM2, SCM2/APO1, OsFbox321, Os_F0393, Pbl6/APO1, Pbl6, OsPbl6,  OsFBX202, FBX202,OsFbox175, Os_F0633,  OsFBX112, FBX112,OsFbox177, Os_F0120,  OsFBDUF19, FBDUF19,OsFbox179, Os_F0161,  OsFBX114, FBX114,OsFbox180, Os_F0342,OsFbox181, Os_F0655,  OsFBX117, FBX117,OsFbox184, Os_F0197,  OsFBX120, FBX120,OsFbox185, Os_F0197,  OsFBX121, FBX121,OsFbox186, Os_F0322,OsFbox187, Os_F0245,  OsFBX123, FBX123,OsFbox188, Os_F0182,  OsFBX124, FBX124,OsFbox190, Os_F0204,  OsFBD9, FBD9,OsFbox192, Os_F0688,  OsFBX126, FBX126,OsFbox193, Os_F0515,OsFbox237, Os_F0241,  OsFBX153, FBX153,OsFbox196, Os_F0324,  OsFBL13, FBL13,OsFbox195, Os_F0144,  OsFBL12, FBL12,OsFbox197, Os_F0620,  OsFBX127, FBX127,OsFbox198, Os_F0644,  OsFBDUF20, FBDUF20,OsFbox199, Os_F0630,  OsFBX128, FBX128,OsFbox200, Os_F0645,  OsFBDUF21, FBDUF21,OsFbox201, Os_F0552,  OsFBX129, FBX129,OsFbox203, Os_F0600,  OsFBK14, FBK14,OsFbox204, Os_F0139,  OsFBX130, FBX130,OsFbox205, Os_F0044,  OsFBX131, FBX131,OsFbox207, Os_F0611,  OsFBLD2, FBLD2,OsFbox208, Os_F0775,  OsFBX132, FBX132,OsFbox211, Os_F0331,  OsFBX135, FBX135,OsFbox212, Os_F0238,  OsFBL17, FBL17,OsFbox213, Os_F0422,  OsFBX136, FBX136,OsFbox214, Os_F0430,  OsFBX137, FBX137,OsFbox215, Os_F0110,  OsFBX138, FBX138,OsFbox216, Os_F0328,  OsFBX139, FBX139,OsFbox218, Os_F0597,  OsFBDUF22, FBDUF22,OsFbox219, Os_F0485,  OsFBX141, FBX141,OsFbox220, Os_F0518,  OsFBX142, FBX142,OsFbox221, Os_F0036,  OsFBX143, FBX143,OsFbox224, Os_F0093,OsFbox225, Os_F0540,  OsFBX146, FBX146,OsFbox226, Os_F0022,  OsFBX147, FBX147,OsFbox227, Os_F0286,  OsFBL19, FBL19,OsFbox228, Os_F0553,  OsFBX148, FBX148,OsFbox229, Os_F0493,  OsFBX149, FBX149,OsFbox231, Os_F0565,  OsFBX151, FBX151,OsFbox235, Os_F0248,  OsFBX152, FBX152,OsFbox238, Os_F0385,  OsFBX154, FBX154,OsFbox242, Os_F0706,  OsFBX156, FBX156,OsFbox241, Os_F0593,  OsFBX155, FBX155,OsFbox244, Os_F0497,  OsFBDUF23, FBDUF23,OsFbox245, Os_F0037,  OsFBX157, FBX157,OsFbox246, Os_F0004,  OsFBX158, FBX158,OsFbox247, Os_F0660,  OsFBX159, FBX159,OsFbox249, Os_F0030,  OsFBX160, FBX160,OsFbox250, Os_F0011,  OsFBX161, FBX161,OsFbox251, Os_F0085,  OsFBX162, FBX162,OsFbox252, Os_F0066,  OsFBX163, FBX163,OsFbox253, Os_F0052,  OsFBX164, FBX164,OsFbox254, Os_F0290,  OsFBDUF24, FBDUF24,OsFbox255, Os_F0067,  OsFBX165, FBX165,OsFbox256, Os_F0111,OsFbox257, Os_F0400,  OsFBX167, FBX167,OsFbox258, Os_F0658,  OsFBL22, FBL22,OsFbox261, Os_F0604,  OsFBL24, FBL24,OsFbox263, Os_F0721,OsFbox264, Os_F0554,OsFbox265, Os_F0584,  OsFBX168, FBX168,OsFbox266, Os_F0434,  OsFBX169, FBX169,OsFbox268, Os_F0080,  OsFBX170, FBX170,OsFbox269, Os_F0444,  OsFBL25, FBL25,OsFbox270, Os_F0454,  OsFBX171, FBX171,OsFbox271, Os_F0666,OsFbox272, Os_F0626,OsFbox273, Os_F0573,OsFbox274, Os_F0450,  OsFBX172, FBX172,OsFbox275, Os_F0483,  OsFBX173, FBX173,OsFbox276, Os_F0412,  OsFBX174, FBX174,OsFbox176, Os_F0077,  OsFBDUF18, FBDUF18,OsFbox222, Os_F0047,  OsFBX144, FBX144,OsFbox223, Os_F0055,  OsFBX145, FBX145,OsFbox277, Os_F0150,  OsFBX175, FBX175,OsFbox279, Os_F0100,  OsFBX176, FBX176,OsFbox280, Os_F0260,  OsFBX177, FBX177,OsFbox283, Os_F0368,  OsFBL26, FBL26,OsFbox284, Os_F0301,  OsFBX179, FBX179,OsFbox285, Os_F0166,  OsFBX180, FBX180,OsFbox286, Os_F0619,  OsFBX181, FBX181,OsFbox287, Os_F0750,  OsFBX182, FBX182,OsFbox288, Os_F0622,  OsFBX183, FBX183,OsFbox289, Os_F0510,  OsFBO18, FBO18,OsFbox191, Os_F0109,  OsFBD10, FBD10,OsTIR1, OsFbox248, Fbox248, Os_F071, AFB,  OsFBL21, FBL21,OsTLP3, TLP3, OsTLP7, OsFbox240, Os_F0401,  OsFBT6, FBT6,OsFbox290, Os_F0343,  OsFBX184, FBX184,OsFbox292, Os_F0618,  OsFBDUF30, FBDUF30,OsFbox293, Os_F0585,  OsFBX186, FBX186,OsFbox294, Os_F0333,OsFbox295, Os_F0299,  OsFBDUF32, FBDUF32,OsFbox296, Os_F0612,OsFbox297, Os_F0442,  OsFBX187, FBX187,OsFbox298, Os_F0486,  OsFBL28, FBL28,OsFbox299, Os_F0015,  OsFBX188, FBX188,OsFbox300, Os_F0003,OsFbox301, Os_F0013,  OsFBX190, FBX190,OsFbox303, Os_F0405,OsFbox305, Os_F0041,  OsFBX193, FBX193,OsFbox306, Os_F0305,  OsFBX194, FBX194,OsFbox307, Os_F0034,  OsFBX195, FBX195,OsFbox308, Os_F0081,  OsFBX196, FBX196,OsFbox309, Os_F0312,  OsFBD11, FBD11,OsFbox310, Os_F0057,  OsFBD12, FBD12,OsFbox311, Os_F0115,  OsFBX197, FBX197,OsFbox313, Os_F0104,  OsFBX198, FBX198,OsFbox354, Os_F0275,  OsFBX226, FBX226,OsFbox315, Os_F0369,OsFbox317, Os_F0038,OsFbox318, Os_F0416,  OsFBX201, FBX201,OsFbox319, Os_F0429,  OsFBK17, FBK17,OsFbox320, Os_F0613,  OsFBDUF34, FBDUF34,OsFbox322, Os_F0520,  OsFBX203, FBX203,OsFbox323, Os_F0105,  OsFBX204, FBX204,OsFbox324, Os_F0220,  OsFBX205, FBX205,OsFbox326, Os_F0327,  OsFBDUF35, FBDUF35,OsFbox327, Os_F0126,  OsFBX206, FBX206,OsFbox328, Os_F0254,  OsFBX207, FBX207,OsFbox329, Os_F0529,  OsFBX208, FBX208,OsFbox330, Os_F0521,  OsFBD13, FBD13,OsFbox331, Os_F0273,  OsFBL32, FBL32,OsFbox332, Os_F0267,  OsFBX209, FBX209,OsFbox333, Os_F0159,  OsFBL33, FBL33,OsFbox334, Os_F0361,OsFbox335, Os_F0487,  OsFBX211, FBX211,OsFbox336, Os_F0293,  OsFBX212, FBX212,OsFbox337, Os_F0302,  OsFBX213, FBX213,OsFbox338, Os_F0537,  OsFBX214, FBX214,OsFbox339, Os_F0636,  OsFBX215, FBX215,OsFbox340, Os_F0124,  OsFBK18, FBK18,OsFbox343, Os_F0141,  OsFBX216, FBX216,OsFbox342, Os_F0418,  OsFBL35, FBL35,OsFbox344, Os_F0183,  OsFBLD3, FBLD3,OsFbox345, Os_F0495,  OsFBX217, FBX217,OsFbox346, Os_F0078,OsFbox347, Os_F0072,  OsFBX220, FBX220,OsFbox348, Os_F0035,  OsFBX221, FBX221,OsFbox350, Os_F0212,  OsFBX222, FBX222,OsFbox351, Os_F0298,  OsFBX223, FBX223,OsFbox352, Os_F0525,  OsFBX224, FBX224,OsFbox353, Os_F0501,  OsFBX225, FBX225,OsFbox355, Os_F0349,  OsFBX227, FBX227,OsFbox356, Os_F0118,  OsFBX229, FBX229,OsFbox357, Os_F0033,  OsFBX230, FBX230,OsFbox358, Os_F0098,  OsFBLD4, FBLD4,OsFbox359, Os_F0431,  OsFBX231, FBX231,OsFbox360, Os_F0235,  OsFBX232, FBX232,OsFbox361, Os_F0171,  OsFBX233, FBX233,OsFbox362, Os_F0439,  OsFBL36, FBL36,OsFbox363, Os_F0353,  OsFBLD5, FBLD5,OsFbox364, Os_F0107,  OsFBLD6, FBLD6,OsFbox365, Os_F0205,  OsFBL37, FBL37,OsFbox366, Os_F0784,  OsFBLD7, FBLD7,OsFbox367, Os_F0432,  OsFBLD8, FBLD8,OsFbox368, Os_F0425,  OsFBDUF36, FBDUF36,OsFbox370, Os_F0625,  OsFBDUF37, FBDUF37,OsFbox371, Os_F0357,  OsFBX235, FBX235,OsFbox372, Os_F0371,OsFbox377, Os_F0465,OsFbox378, Os_F0217,  OsFBX241, FBX241,OsFbox379, Os_F0261,  OsFBX242, FBX242,OsFbox373, Os_F0163,  OsFBL38, FBL38,OsFbox375, Os_F0062,  OsFBX237, FBX237,OsFbox376, Os_F0063,  OsFBX238, FBX238,OsFbox380, Os_F0423,  OsFBX243, FBX243,OsFbox384, Os_F0579,  OsFBX247, FBX247,OsFbox381, Os_F0656,OsFbox382, Os_F0731,  OsFBX245, FBX245,OsFbox383, Os_F0702,  OsFBX246, FBX246,OsFbox385, Os_F0148,  OsFBX248, FBX248,OsFbox386, Os_F0523,  OsFBX249, FBX249,OsFbox387, Os_F0534,  OsFBX250, FBX250,OsFbox388, Os_F0605,  OsFBX251, FBX251,OsFbox374, Os_F0598,OsFbox302, Os_F0143,  OsFBL29, FBL29,  OsFBX191, FBX191,OsFbox389, Os_F0673,  OsFBX252, FBX252,OsFbox391, Os_F0082,  OsFBX253, FBX253,OsFbox392, Os_F0313,  OsFBL39, FBL39,OsFbox393, Os_F0462,  OsFBX254, FBX254,OsFbox395, Os_F0032,OsFbox397, Os_F0108,  OsFBX258, FBX258,OsFbox400, Os_F0541,  OsFBK19, FBK19,OsFbox408, Os_F0490,  OsFBX262, FBX262,OsTLP7, TLP7, OsTLP11, OsFbox398, Os_F0421,  OsFBT11, FBT11,OsTLP2, OsTLP2a, OsTLP2b, OsTLP12, OsFbox402, Os_F0479,  OsFBT12, FBT12,OsFbox401, Os_F0042,  OsFBDUF39, FBDUF39,OsFbox403, Os_F0338,  OsFBX260, FBX260,OsFbox404, Os_F0566,  OsFBDUF40, FBDUF40,OsFbox405, Os_F0623,  OsFBDUF41, FBDUF41,OsFbox406, Os_F0075,  OsFBL40, FBL40,OsFbox407, Os_F0406,  OsFBX261, FBX261,OsFbox409, Os_F0265,  OsFBX263, FBX263,OsFbox410, Os_F0192,  OsFBX264, FBX264,OsFbox411, Os_F0280,  OsFBX265, FBX265,OsFbox413, Os_F0321,  OsFBL41, FBL41,OsFbox414, Os_F0654,  OsFBX267, FBX267,OsFbox415, Os_F0498,OsFbox416, Os_F0464,  OsFBL42, FBL42,OsFbox417, Os_F0682,  OsFBL43, FBL43,OsFbox418, Os_F0453,  OsFBX269, FBX269,OsFbox420, Os_F0206,  OsFBX271, FBX271,OsFbox421, Os_F0249,  OsFBX272, FBX272,OsFbox423, Os_F0386,  OsFBX274, FBX274,OsFbox422, Os_F0246,  OsFBX273, FBX273,OsFbox424, Os_F0348,  OsFBL44, FBL44,OsFbox425, Os_F0168,  OsFBX275, FBX275,OsFbox426, Os_F0184,  OsFBX276, FBX276,OsFbox427, Os_F0221,  OsFBX277, FBX277,OsFbox428, Os_F0440,  OsFBX278, FBX278,OsFbox429, Os_F0367,OsFbox430, Os_F0456,  OsFBX280, FBX280,OsFbox431, Os_F0614,  OsFBX281, FBX281,OsFbox432, Os_F0694,  OsFBL45, FBL45,OsFbox433, Os_F0239,  OsFBX282, FBX282,OsFbox435, Os_F0317,  OsFBO20, FBO20,OsFbox436, Os_F0146,OsFbox437, Os_F0277,  OsFBL46, FBL46,OsFbox438, Os_F0427,  OsFBL47, FBL47,OsFbox439, Os_F0320,OsFbox440, Os_F0542,  OsFBDUF44, FBDUF44,OsFbox441, Os_F0010,  OsFBX288, FBX288,OsFbox444, Os_F0648,  OsFBX291, FBX291,OsFbox447, Os_F0225,  OsFBX293, FBX293,OsFbox446, Os_F0095,  OsFBX292, FBX292,OsFbox448, Os_F0428,  OsFBDUF46, FBDUF46,OsFbox449, Os_F0345,  OsFBL48, FBL48,OsFbox450, Os_F0185,  OsFBX294, FBX294,OsFbox452, Os_F0193,  OsFBL50, FBL50,OsFbox451, Os_F0189,  OsFBL49, FBL49,OsFbox453, Os_F0339,  OsFBD14, FBD14,OsFbox454, Os_F0207,  OsFBL51, FBL51,OsFbox455, Os_F0173,  OsFBX295, FBX295,OsFbox457, Os_F0575,  OsFBX297, FBX297,OsFbox458, Os_F0530,  OsFBX298, FBX298,OsFbox459, Os_F0074,  OsFBX299, FBX299,OsFbox460, Os_F0200,  OsFBX300, FBX300,OsFbox461, Os_F0025,  OsFBX301, FBX301,OsFbox462, Os_F0019,  OsFBX302, FBX302,OsFbox463, Os_F0230,  OsFBX303, FBX303,OsFbox464, Os_F0048,  OsFBX304, FBX304,OsFbox465, Os_F0016,OsFbox466, Os_F0587,  OsFBX306, FBX306,OsFbox467, Os_F0397,  OsFBX307, FBX307,OsFbox468, Os_F0398,  OsFBX308, FBX308,OsFbox469, Os_F0272,  OsFBX309, FBX309,OsFbox470, Os_F0504,  OsFBX311, FBX311,OsFbox471, Os_F0538,  OsFBX312, FBX312,OsFbox473, Os_F0455,  OsFBX314, FBX314,OsFbox474, Os_F0632,  OsFBX315, FBX315,OsFbox475, Os_F0634,  OsFBX316, FBX316,OsFbox476, Os_F0457,  OsFBX317, FBX317,OsFbox477, Os_F0147,  OsFBX318, FBX318,OsFbox478, Os_F0354,  OsFBX319, FBX319,OsFbox479, Os_F0399,  OsFBX320, FBX320,OsFbox480, Os_F0388,OsFbox482, Os_F0167,  OsFBX323, FBX323,OsFbox483, Os_F0233,  OsFBX324, FBX324,OsFbox484, Os_F0373,  OsFBX325, FBX325,OsFbox491, Os_F0580,  OsFBX330, FBX330,OsFbox485, Os_F0149,  OsFBX326, FBX326,OsFbox486, Os_F0355,  OsFBX328, FBX328,OsFbox487, Os_F0548,  OsFBLD9, FBLD9,OsFbox494, Os_F0637,  OsFBX333, FBX333,OsFbox495, Os_F0522,  OsFBX334, FBX334,OsFbox488, Os_F0562,  OsFBX329, FBX329,OsFbox489, Os_F0053,  OsFBA3, FBA3,OsFbox492, Os_F0175,  OsFBX331, FBX331,OsFbox493, Os_F0049,  OsFBX332, FBX332,OsFbox496, Os_F0287,OsFbox497, Os_F0433,  OsFBX336, FBX336,OsFbox498, Os_F0145,  OsFBX337, FBX337,OsFbox499, Os_F0020,  OsFBX338, FBX338,OsFbox500, Os_F0186,  OsFBX339, FBX339,OsFbox399, Os_F0281,  OsFBX259, FBX259,OsFbox501, Os_F0050,  OsFBX340, FBX340,OsFbox503, Os_F0101,  OsFBK20, FBK20,OsFbox504, Os_F0474,  OsFBX341, FBX341,OsFbox505, Os_F0638,  OsFBX342, FBX342,OsFbox507, Os_F0071,  OsFBX343, FBX343,OsFbox508, Os_F0127,  OsFBX344, FBX344,OsFbox510, Os_F0210,  OsFBX346, FBX346,OsFbox511, Os_F0112,  OsFBX347, FBX347,OsFbox512, Os_F0102,  OsFBX348, FBX348,OsFbox513, Os_F0131,  OsFBX349, FBX349,OsFbox514, Os_F0140,  OsFBX350, FBX350,OsFbox515, Os_F0086,  OsFBX351, FBX351,OsFbox517, Os_F0054,  OsFBX353, FBX353,OsFbox518, Os_F0218,  OsFBX354, FBX354,OsFbox520, Os_F0588,  OsFBX356, FBX356,OsFbox521, Os_F0526,  OsFBX357, FBX357,OsFbox522, Os_F0408,  OsFBX358, FBX358,OsFbox523, Os_F0629,  OsFBX359, FBX359,OsFbox524, Os_F0561,  OsFBX360, FBX360,OsFbox525, Os_F0176,  OsFBX361, FBX361,OsFbox526, Os_F0056,  OsFBX362, FBX362,OsFbox527, Os_F0059,  OsFBX363, FBX363,OsFbox528, Os_F0224,  OsFBO5, FBO5,OsFbox534, Os_F0527,  OsFBX370, FBX370,OsFbox531, Os_F0024,  OsFBX367, FBX367,OsFbox532, Os_F0058,  OsFBX368, FBX368,OsFbox533, Os_F0350,  OsFBX369, FBX369,OsFbox535, Os_F0208,  OsFBX371, FBX371,OsFbox536, Os_F0201,  OsFBX372, FBX372,OsFbox537, Os_F0165,  OsFBX373, FBX373,OsFbox538, Os_F0470,OsFbox539, Os_F0316,  OsFBX375, FBX375,OsFbox540, Os_F0468,  OsFBX376, FBX376,OsFbox541, Os_F0409,  OsFBX377, FBX377,OsFbox543, Os_F0162,  OsFBX379, FBX379,OsFbox544, Os_F0652,  OsFBX380, FBX380,OsFbox545, Os_F0535,  OsFBX381, FBX381,OsFbox546, Os_F0513,  OsFBX382, FBX382,OsFbox547, Os_F0119,  OsFBK21, FBK21,OsFbox548, Os_F0160,  OsFBX383, FBX383,OsFbox549, Os_F0255,  OsFBK22, FBK22,OsFbox550, Os_F0263,  OsFBX384, FBX384,OsFbox551, Os_F0073,  OsFBX385, FBX385,OsFbox554, Os_F0677,  OsFBX386, FBX386,OsFbox555, Os_F0152,  OsFBX387, FBX387,OsFbox556, Os_F0154,  OsFBX388, FBX388,OsFbox558, Os_F0376,  OsFBX390, FBX390,OsFbox559, Os_F0572,  OsFBDUF49, FBDUF49,OsFbox560, Os_F0582,  OsFBX391, FBX391,OsFbox561, Os_F0014,  OsFBX392, FBX392,OsFbox564, Os_F0113,  OsFBX394, FBX394,OsFbox562, Os_F0002,OsFbox565, Os_F0027,  OsFBX395, FBX395,OsFbox566, Os_F0279,  OsFBK24, FBK24,OsFbox568, Os_F0335,  OsFBX396, FBX396,OsFbox570, Os_F0219,  OsFBX397, FBX397,OsFbox572, Os_F0135,  OsFBX398, FBX398,OsFbox577, Os_F0135,OsFbox578, Os_F0136,  OsFBL53, FBL53,OsFbox579, Os_F0334,OsFbox580, Os_F0096,  OsFBX405, FBX405,OsFbox582, Os_F0511,  OsFBX407, FBX407,OsFbox583, Os_F0363,  OsFBX408, FBX408,OsFbox584, Os_F0231,  OsFBX409, FBX409,OsFbox585, Os_F0294,  OsFBX410, FBX410,OsFbox587, Os_F0097,  OsFBX412, FBX412,OsFbox595, Os_F0194,  OsFBL54, FBL54,OsFbox597, Os_F0447,  OsFBX420, FBX420,OsFbox519,  OsFBX355, FBX355,OsFbox600, Os_F0472,  OsFBO4, FBO4,OsFbox602, Os_F0512,  OsFBX421, FBX421,OsFbox604, Os_F0232,  OsFBX422, FBX422,OsFbox588, Os_F0365, Fbox-10,  OsFBX413, FBX413,OsFbox605, Os_F0437,  OsFBL57, FBL57,OsFbox606, Os_F0155,  OsFBX423, FBX423,OsFbox607, Os_F0045,  OsFBX424, FBX424,OsFbox608, Os_F0043,  OsFBX425, FBX425,OsFbox616, Os_F0314,  OsFBDUF54, FBDUF54,OsFbox617, Os_F0505,  OsFBDUF55, FBDUF55,OsFbox621, Os_F0621,  OsFBDUF59, FBDUF59,OsFbox622, Os_F0499,  OsFBDUF60, FBDUF60,OsFbox623, Os_F0502,  OsFBDUF61, FBDUF61,OsFbox630, Os_F0318,  OsFBX430, FBX430,OsFbox641, Os_F0319,  OsFBO23, FBO23,OsFbox530, Fbox530, Os_F0198, OsFBX365, FBX365, PEG2,  OsFBX365, FBX365,OsFbox573,OsFbox574,OsFbox575,OsFbox576,OsFbox603, Os_F0489,  OsFBL56, FBL56,OsFbox626,  OsFBDUF64, FBDUF64,JMJ710, OsFbox611, Os_F0574,  OsFBO15, FBO15,OsFbox610, Os_F0557,  OsFBDUF50, FBDUF50,OsFbox612, Os_F0268,  OsFBDUF51, FBDUF51,OsFbox613, Os_F0243,  OsFBDUF52, FBDUF52,OsFbox614, Os_F0381,  OsFBDUF53, FBDUF53,OsFbox615, Os_F0099,  OsFBX426, FBX426,OsFbox618, Os_F0583,  OsFBDUF56, FBDUF56,OsFbox620, Os_F0358,  OsFBDUF58, FBDUF58,OsFbox624, Os_F0226,  OsFBDUF62, FBDUF62,OsFbox627, Os_F0089,  OsFBX427, FBX427,OsFbox628, Os_F0028,OsFbox629, Os_F0564,  OsFBX429, FBX429,OsFbox631, Os_F0064,  OsFBX431, FBX431,OsFbox632, Os_F0391,  OsFBX432, FBX432,OsTLP6, TLP6, OsTLP13, OsFbox569, Os_F0461,  OsFBT13, FBT13,OsFbox633, Os_F0413,  OsFBX433, FBX433,OsFbox634, Os_F0372,  OsFBX434, FBX434,OsFbox635, Os_F0310,  OsFBL58, FBL58,OsFbox648, Os_F0414,OsFbox638, Os_F0021,  OsFBX436, FBX436,OsFbox639, Os_F0382,  OsFBX437, FBX437,OsFbox642, Os_F0213,  OsFBO24, FBO24,OsFbox643,  OsFBX481, FBX481,OsFbox644, Os_F0725,  OsFBX439, FBX439,OsFbox646, Os_F0134,  OsFBX440, FBX440,OsFbox647, Os_F0466,  OsFBX441, FBX441,OsFbox649, Os_F0410,  OsFBX443, FBX443,OsFbox650, Os_F0568,  OsFBX444, FBX444,OsFbox651, Os_F0018,  OsFBA4, FBA4,OsFbox652, Os_F0284,  OsFBX445, FBX445,OsFbox553, Os_F0250,  OsFBK23, FBK23,OsFbox654, Os_F0092,  OsFBX447, FBX447,OsFbox655, Os_F0116,  OsFBD15, FBD15,OsFbox657, Os_F0500,  OsFBL59, FBL59,OsFbox658, Os_F0589,  OsFBL60, FBL60,OsFbox659, Os_F0424,  OsFBX449, FBX449,OsFbox660, Os_F0569,  OsFBX450, FBX450,OsFbox661, Os_F0665,  OsFBL61, FBL61,OsFbox662, Os_F0567,  OsFBX451, FBX451,OsFbox663, Os_F0276,  OsFBX452, FBX452,OsFbox664, Os_F0592,  OsFBX453, FBX453,OsFbox665, Os_F0555,  OsFBX454, FBX454,OsFbox666, Os_F0411,  OsFBX455, FBX455,OsFbox667, Os_F0594,  OsFBD16, FBD16,OsFbox668, Os_F0389,OsFbox669, Os_F0383,  OsFBX456, FBX456,OsFbox670, Os_F0419,  OsFBDUF66, FBDUF66,OsFbox671, Os_F0524,  OsFBX457, FBX457,OsFbox673, Os_F0735,  OsFBX460, FBX460,OsFbox674, Os_F0164,  OsFBX462, FBX462,OsFbox676, Os_F0269,  OsFBX463, FBX463,OsFbox677, Os_F0195,  OsFBX464, FBX464,OsFbox678, Os_F0417,Os_F0653,  OsFBDUF5, FBDUF5,Os_F0699,  OsFBX84, FBX84,Os_F0798,Os_F0607,  OsFBL14, FBL14,Os_F0756,  OsFBO17, FBO17,Os_F0796,  OsFBO3, FBO3,Os_F0659,  OsFBDUF26, FBDUF26,Os_F0687,  OsFBL15, FBL15,,  OsFBX219, FBX219,,  OsFBX240, FBX240,Os_F0669,Os_F0733,  OsFBDUF42, FBDUF42,Os_F0671,  OsFBDUF43, FBDUF43,Os_F0451,  OsFBX286, FBX286,Os_F0695,  OsFBDUF45, FBDUF45,,  OsFBX366, FBX366,Os_F0138,  OsFBX59, FBX59,OsFbox656,  OsFBX448, FBX448,Os_F0780, OsFBX9,  OsFBX9, FBX9,Os_F0785, OsEnS-103,  OsFBX228, FBX228,,OsFbox653, Os_F0172,OsFbox506, Os_F0596,  OsFBO22, FBO22,OsFbox593, Os_F0278, Fbox-3,  OsFBX418, FBX418,OsFbox590, Os_F0068, Fbox-6,OsFbox589, Os_F0137, Fbox-8,  OsFBX414, FBX414,OsFbox586, Os_F0088, Fbox-13,  OsFBX411, FBX411,Os_F0247,  OsFBO6, FBO6,OsFbox675, Os_F0744,OsMADS69, MADS69,Os_F0344, OsFBL31, FBL31,OsTLP4, TLP4, OsTLP14, OsFbox645, Os_F0315,  OsFBT14, FBT14,OsFbox129, Os_F0178,  OsFBK11, FBK11,OsFbox210,  OsFBX134, FBX134,Os_F0732,OsFbox619, Os_F0190, OsSTA265,  OsFBDUF57, FBDUF57,OsFbox001, OsFbox1, Os_F0615, OsFBX1,  OsFBX1, FBX1,Os_F0739, OsFBX2,  OsFBX2, FBX2,OsFbox010, OsFbox10, Os_F0156, OsFBX6,  OsFBX6, FBX6,OsFbox014, OsFbox14, Os_F0467, OsFBX11,  OsFBX11, FBX11,OsFbox178, Os_F0705,  OsFBX113, FBX113,OsFbox025, OsFbox25, Os_F0325,  OsFBD5, FBD5,Os_F0698,  OsFBX461, FBX461,OsFbox011, OsFbox11, Os_F0196, OsFBX7, FBX7,  OsFBX7, FBX7,OsFbox529, Os_F0667, OsEnS-132,  OsFBX364, FBX364,OsFbox396, Os_F0578, OsMsr9, Msr9,  OsFBX257, FBX257,OsFbox217, Os_F0121, MOF, OsMOF,  OsFBX140, FBX140,OsFbox542, Os_F0480, OsSTA237,  OsFBX378, FBX378,OsFbox006, OsFbox6, Os_F0083, OsFBX5, OsSTA12,  OsFBX5, FBX5,OsFbox443, Os_F0084, OsSTA212,  OsFBX290, FBX290,OsFbox672, Os_F0707,  OsFBX458, FBX458,  OsFBX459, FBX459,OsFbox165, Os_F0229, OsFbox166, Os_F0438,  OsFBX105, FBX105,  OsFBX106, FBX106
31178	17293435	Chong, Kang	Overexpression of an R1R2R3 MYB Gene, OsMYB3R-2, Increases Tolerance to Freezing, Drought, and Salt Stress in Transgenic Arabidopsis.	Plant Physiol.	143(4)	1739-1751	2007	MYB3R2,MYB3R1	OsMYB3R-2, OsMYB3R2, OsMSL07, MSL07, MSL7, DLN28, OsDLN28,OsMYB3R-1, OsMYB3R1, Os2R_MYB95, 2R_MYB95
31179	17322341	Reid, James B.	Characterization of Two Brassinosteroid C-6 Oxidase Genes in Pea.	Plant Physiol.	143(4)	1894-1904	2007		
31180	17337526	Liu, Yongsheng	An Unusual Posttranscriptional Processing in Two Betaine Aldehyde Dehydrogenase Loci of Cereal Crops Directed by Short, Direct Repeats in Response to Stress Conditions.	Plant Physiol.	143(4)	1929-1942	2007		
31181	17351055	Shewry, Peter R.	A Novel Bioinformatics Approach Identifies Candidate Genes for the Synthesis and Feruloylation of Arabinoxylan.	Plant Physiol.	144(1)	43-53	2007		
31182	17369434	Perata, Pierdomenico	Transcript Profiling of the Anoxic Rice Coleoptile.	Plant Physiol.	144(1)	218-231	2007	EXPB12,EXPA7,WX1	OsEXPB12, OsaEXPb1.17,OsEXPA7, EXP7, OsEXP7, OsaEXPa1.26,wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx
31183	17384160	Yamaguchi, Takeshi	Comprehensive Expression Profiling of Rice Grain Filling-Related Genes under High Temperature Using DNA Microarray.	Plant Physiol.	144(1)	258-277	2007	AMY3E,SBE4,GPT1,PRO13B.2,AGPS1,WX1,AGPS2,SBE3,AMY1A,HSP26,FLO4,HSP22A,HSFB2C,AMY4A,SBE1,RSUS2,AMY3D,BT1-1,PDIL1-1	Amy3D/E*(RAmy3D/E), alpha Amy8, alphaAmy8, AmyII-3, AMY1.4, Amy3E, Amy3D/E*, RAmy3D/E, Amy9, RAmy3E, alphaAmy8-C, AMY3E/AMY1.4, OsAmy3E, OsRamy3E,RBE4, OsSBE4, BEIIa, QEIIb, BEIIA, OsBEIIa,OsGPT1, OsGPT2, GPT2,Prol-21, pro13b.2, OsPRO13B.2, PROLM20,OsAGPS1, APS1, OsAPS1, AGPsma,wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx,OsAGPS2a, AGPS2A, AGPS2B, OsAGPS2, osagps2, APS2, APS2a, APS2b, AGPS2a, APGS2b, OsAGPS2b, AGPP, GAS8, OsAPS2, OsAPS2a, OsAPS2b,SBEIII*, SBEIII, Sbe3, RBE3, QEIIa, QEIIA, BEIIb, BEIIB, SBEIIb, OsBEIIb, sbe3, SBE III, OsSBEIIb, SBEIIb,Amy1A/C*(RAmy1A/C), alpha Amy7, AMY1.1, Amy1A, RAmy1A/C, Amy1A/C*, Amy1, Amy1A_C, OsAmy1A, alphaAmy7-C, RAmy1A, AmyI-1, OsAmyI-1, OsRamy1A,OsHSP26, Oshsp26, OsHSP26.7, HSP26.7,FLO4-4, flo4, flo4-2, flo4-3, ppdk, OsPPDK, PPDK1, CPDK1, PPDKB, OsPPDKB, cyOsPPDKB, OsPBDK, PBDK, osppdkb, PPD, cyPPDK, chPPDKB, chOsPPDKB,hsp20, HSP22a, OsHSP22a, HSP23.2, OsHSP23.2,HSfB2c, OsHsfB2c, OsHsf-24, HSF24, OsHSF24 ,OsSTA30, Amy4A, OsAMY4A,sbe1, Rbe1. Sbe1, sbe1*(QEI), RBE1, BEI, SBE I, QEI, OsBEI, BE1, OsSBE1, OsSBEI, SBEI,sus2, RSus2(t), SUS2, SS1, OsScS1, RSs1, RSus2, OsSUS2, RSS1, RSus1, OsSusy2, Susy2, OsRSUS1, RSUS1,Amy3D/E*(RAmy3D/E), alpha Amy3, AmyII-4, AMY1.3, Amy3D, Amy3D/E*, RAmy3D/E, Amy3D_E, Amy8, aAmy3, RAmy3D, OsAmy3D, alphaAmy3, OsRamy3D,OsBT1-1, OsEnS-29, OsBT1, OsBt1, BT1, Bt1, OsBt1-1, shr3, OsBT1-2, BT1-2,OsPDIL1;1, PDIL1;1, PDIL 1-1, PDI, OsPDIL1-1, OsTrx28, Trx28
31184	17351053	Zhou, Dao-Xiu	A WUSCHEL-LIKE HOMEOBOX Gene Represses a YABBY Gene Expression Required for Rice Leaf Development.	Plant Physiol.	144(1)	380-390	2007	WOX4,SH1,YAB5,WOX6,YAB6,WOX8,QHB,WOX10,YAB1,GL1,NAL3,WOX5,DWT1,YAB3,NAL2,YAB4,TAB1,WOX11	OsWOX4, Os WOX4,YAB2, OsYAB2, OsSh1, Sh1, OsFIL2, OsSH1, Osh1,OsYABBY5, OsYAB3, YAB3, Os YABBY5, TOB1, OsTPB1,OsWOX6, Os WOX6, OsWOX12B, WOX12B,OsYAB6, OsYAB5,OsWOX8, Os WOX8, OsWOX13, WOX13, OsWOX9B,OsQHB, OsWOX9, WOX9, WOX5, Os WOX5, OsWOX5, QHB/OsWOX9,OsWOX10, Os WOX10, OsWOX11/12, OsWOX11,OsYAB1, FIL1, osFIL1,gl1, NUDA/GL-1, NUDA/GL1, NUDA, GL-1, OsWOX3B, OsWOX2, OsWOX3, Os WOX3, WOX3B, WOX2, WOX3, LSY1, OsLSY1, DEP, OsDEP,nal3(nal2), nal2, nal3, cul3, OsWOX3A, WOX3A, WOX3, OsWOX3, OsNS, OsNS1/OsNS2, OsPRS,OsWOX2, Os WOX2, WOX2, OsWOX5, OsWOX2L, WOX2L,OsWOX7, Os WOX7, WOX7, OsWOX9A, DWT1/WOX9A, OsDWT1, WOX9A,OsYAB3, OsYAB4, TOB3,nal2, nal3, cul2, OsWOX3A, WOX3A, Os NS, NS, OsNS, OsWOX3, OsNS1/OsNS2, OsPRS,OsYAB4, OsYAB7, TOB2, ,Os WUS, WUS, OsWOX1, WOX1, OsWUS, OsTAB, TAB1/WUS, MOC3, MOC3/OsWUS, SRT1, MOC3/TAB1/SRT1, DC1, OsDC1, DAP1, OsDAP1,OsWOX11, Os WOX11, OsWOX12A
31185	17351054	Wang, Guo-Liang	Magnaporthe grisea Infection Triggers RNA Variation and Antisense Transcript Expression in Rice.	Plant Physiol.	144(1)	524-533	2007		
31186	18281415	Wobus, Ulrich	Barley Grain Maturation and Germination: Metabolic Pathway and Regulatory Network Commonalities and Differences Highlighted by New MapMan/PageMan Profiling Tools.	Plant Physiol.	146(4)	1738-1758	2008		
31187	18245456	He, Guangcun	Herbivore-Induced Callose Deposition on the Sieve Plates of Rice: An Important Mechanism for Host Resistance.	Plant Physiol.	146(4)	1810-1820	2008	BPH15,BPH14,AMY3D	RLCK134, OsRLCK134, OsLecRK1, LecRK1, SDRLK-LecRK1, OsSDRLK-LecRK1, OslecRK, lecRK, Bph15, OsBph15, Bph15 (Qbp2), Qbp2, qBPH-4,Bph14 (Qbp1), Bph14, Qbp1, qBPH-3,Amy3D/E*(RAmy3D/E), alpha Amy3, AmyII-4, AMY1.3, Amy3D, Amy3D/E*, RAmy3D/E, Amy3D_E, Amy8, aAmy3, RAmy3D, OsAmy3D, alphaAmy3, OsRamy3D
31188	18088314	Roulin A, Piegu B, Wing RA, Panaud O.	Evidence of multiple horizontal transfers of the long terminal repeat retrotransposon RIRE1 within the genus Oryza.	Plant J.	53(6)	950-9	2008	RIRE1	RIRE1, Osr11, Rire1
31189	12481052	Jiang N, Jordan IK, Wessler SR.	Dasheng and RIRE2. A nonautonomous long terminal repeat element and its putative autonomous partner in the rice genome.	Plant Physiol.	130(4)	1697-705	2002	RIRE2,DASHENG	RIRE2, Osr26, Rire2, Retrosat2,Dasheng
31191	12897975	Wang R, Hong GF, Han B.	Characterization of the copy number of RIRE10 retrotransposon and transcriptional activity of its LTR in rice genome	Sheng Wu Hua Xue Yu Sheng Wu Wu Li Xue Bao (Shanghai).	35(8)	768-73	2003	RIRE10	RIRE10
31192	15695435	Asano T, Tanaka N, Yang G, Hayashi N, Komatsu S.	Genome-wide identification of the rice calcium-dependent protein kinase and its closely related kinase gene families: comprehensive analysis of the CDPKs gene family in rice.	Plant Cell Physiol.	46(2)	356-66	2005	DMI3,CDPK24,CDPK19,CDPK8,CDPK21,CRK2,CRK3,CRK4,CRK5,_,_,CRK1,CDPK13,CDPK5,CDPK10,CDPK27,CDPK7,CDPK11,CDPK14,CDPK2,ESL4,SPK,CDPK9,CDPK17,CDPK28,CDPK15,CDPK3,CDPK29,CDPK25,CDPK22,CDPK30,CDPK20,CDPK26,CDPK31,CDPK16,CDPK1,CDPK6,CDPK4,CDPK18	OsDMI3, OsCCaMK1, OsCCaMK, OsCCAMK, CCAMK,OsCDPK24, OsCPK24, OsCDPK14, CPK24,OsCDPK19, OsCPK19, OsCDPK2, CPK2, CDPK2,OsCDPK8, OsCPK8,OsCDPK21, OsCPK21, CPK21, CPK-21,OsCRK2,OsCRK3,OsCRK4,OsCRK5,OsPEPRK1,OsPEPRK2,OsCRK1, OsCBK, CBK,OsCDPK13, OsCPK13, OsCDPK7, CDPK7, OsCPK13-1, OsCPK13-2,OsCDPK5, OsCPK5, CPK5,OsCDPK10, OsCPK10, CPK10,OsCDPK27, OsCPK27, CPK27,OsCDPK7, OsCPK7, CDPK1, OsCDPK11, CDPK12, OsCDPK13,OsCDPK11, OsCPK11, CPK11,OsCDPK14, OsCPK14, CPK14,OsCDPK2, OsCPK2, CPK2,CDPK12, OsCDPK12, OsCPK12, CPK12, OsESL4,CDPK 1, CDPK1, CDPK23, OsCDPK23, OsCPK23, CPK23, OsSPK,OsCDPK9, OsCPK9, CPK9,OsCDPK17, OsCPK17, CPK17, OsCPK17.1, OsCPK17.2, OsCPK17.3, OsCPK17.4, OsCPK17.5,OsCDPK28, OsCPK28, CPK28,OsCDPK15, OsCPK15,OsCDPK3, OsCPK3, CPK3,OsCDPK29, OsCPK29,OsCDPK25, OsCPK25, CPK25,OsCDPK22, OsCPK22, CPK22,OsCDPK30, OsCPK30, CPK30,OsCDPK20, OsCPK20, CPK20,OsCDPK26, OsCPK26, CPK26,OsCDPK31, OsCPK31, CPK31,OsCDPK16, OsCPK16, CPK16,OsCDPK1, OsCPK1, CPK1,OsCDPK6, OsCPK6, CPK6,OsCDPK4, OsCPK4, CPK4, CDPK1,OsCDPK18, OsCPK18, CDPK5, OsCDPK5, CPK18
31193	12096107	Bughio,N., Yamaguchi,H., Nishizawa,N.K., Nakanishi,H. and Mori,S.	Cloning an iron-regulated metal transporter from rice	J. Exp. Bot.	53(374)	1677-1682	2002	IRT1	OsIRT1, ZIP10, OsZIP10, OsZIP12, ZIP12
31194	18678896	Chen,J., Ding,J., Ouyang,Y., Du,H., Yang,J., Cheng,K., Zhao,J., Qiu,S., Zhang,X., Yao,J., Liu,K., Wang,L., Xu,C., Li,X., Xue,Y., Xia,M., Ji,Q., Lu,J., Xu,M. and Zhang,Q.	A triallelic system of S5 is a major regulator of the reproductive barrier and compatibility of indica-japonica hybrids in rice	Proc. Natl. Acad. Sci. U.S.A.	105(32)	11436-11441	2008	S5	S5-3, S5-4
31195	18599581	Chen,S., Yang,Y., Shi,W., Ji,Q., He,F., Zhang,Z., Cheng,Z., Liu,X. and Xu,M.	Badh2, encoding betaine aldehyde dehydrogenase, inhibits the biosynthesis of 2-acetyl-1-pyrroline, a major component in rice fragrance	Plant Cell	20(7)	1850-1861	2008	SK2(T)(SCL, FGR)	sk2(t)(scl, fgr), fgr, scl, BAD2, BADH2, sk2, OsBADH2, Badh2, badh2, Os2AP, BADH-2, OsALDH10A8, ALDH10A8 
31197	18586507	Garrocho-Villegas,V., Bustos-Rivera,G., Gough,J., Vinogradov,S.N. and Arredondo-Peter,R.	Expression and in silico structural analysis of a rice (Oryza sativa) hemoglobin 5	Plant Physiol. Biochem.	46(10)	855-859	2008	Hb5	OsHB5, HB5, OsPgb1.5, Pgb1.5
31198	18831738	Guo,X., Gui,Y., Wang,Y., Zhu,Q.H., Helliwell,C. and Fan,L.	Selection and mutation on microRNA target sequences during rice evolution	BMC Genomics.	9(1)	454	2008	MIR820A,MIR408,miR535,MIR397A,MIR390	miR820a, osa-miR820a, osa-MIR820a, OsmiR820a,miR408, osa-MIR408osa-miR408 osa-miR408-3p osa-miR408-5p, OsMIR408 ,OsmiR535, osa-MIR535osa-miR535 osa-miR535-3p osa-miR535-5p,miR397a, osa-miR397a, osa-MIR397a, OsmiR397a,OsmiR390, miR390, osa-MIR390osa-miR390, osa-miR390-3p, osa-miR390-5p
31199	18755256	Huang,J., Wang,M.M., Bao,Y.M., Sun,S.J., Pan,L.J. and Zhang,H.S.	SRWD: A novel WD40 protein subfamily regulated by salt stress in rice (Oryza sativa L.)	Gene	424(1-2)	71-79	2008	SRWD5,SRWD1,SRWD4,SRWD3,SRWD2	OsSRWD5, OsWD40-73,  OsDWD55, DWD55,SRWD1, OsWD40-162,  OsDWD57, DWD57,SRWD4, OsWD40-160,  OsDWD56, DWD56,SRWD3, OsWD40-126,  OsDWD54, DWD54,SRWD2, OsWD40-52
31200	18566795	Kim,S.I., Andaya,C.B., Goyal,S.S. and Tai,T.H.	The rice OsLpa1 gene encodes a novel protein involved in phytic acid metabolism	Theor. Appl. Genet.	117(5)	769-779	2008	LPA1	Lpa1, OsLpa1, OsLpa1.1, OsLpa1.2, OsLpa1.3, Oslpa1, OsLpa1-3.1, OsLpa1-3.2, OsLpa1-3.3
31201	18723891	Koide,Y., Ikenaga,M., Sawamura,N., Nishimoto,D., Matsubara,K., Onishi,K., Kanazawa,A. and Sano,Y.	The evolution of sex-independent transmission ratio distortion involving multiple allelic interactions at a single locus in rice	Genetics	180(1)	409-420	2008	S6	
31202	18619847	Kumar,K., Rao,K.P., Sharma,P. and Sinha,A.K.	Differential regulation of rice mitogen activated protein kinase kinase (MKK) by abiotic stress	Plant Physiol. Biochem.	46(10)	891-897	2008	MKK10-1,MKK3,MKK5,MKK6,MKK10-2,SMG1,MKK10-3,MKK1	OsMKK10-1, MPKK10.1 ,OsMKK3, OsMAPKK3, MAPKK3, OsMEK8a, MEK8a, OsMEK3, MEK3,OsMKK5, BUD1, OsBUD1,OsMKK6, OsMEK1, MEK1, OsMAPKK6, MAPKK6, OsMPKK6, MPKK6, OsMAP1, MAP1,OsMKK10-2, MKK10-2D, OsMPKK10-2, MPKK10-2, OsMKK10.2, MKK10.2, OsMPKK10-2D, MPKK10-2D, MPKK10.2, OsMAPKK10-2, MAPKK10-2, OsMEK3. MEK3,OsMKK4, MKK4, OsMKK4/SMG1, OsMAPKK4, MAPKK4, OsMEK4, MEK4, OsSMG1, SMG1/OsMEK6, OsMEK6, MEK6, OsSTS, STS,MPKK10.3,OsMKK1, OsMEK2, MEK2, OsMAPKK1, MAPKK1, OsMAP2K2, MAP2K2
31203	18820696	Lin,H.-X., Jin,J., Huang,W., Gao,J.-P., Yang,J., Shi,M., Zhu,M.-Z. and Luo,D.	Genetic control of rice plant architecture domestication	Nat Genet	40(11)	1365-69	2008	PROG1	OsPROG1, ZOS7-02, OsZOS7-02
31204	14645394	Li,Y., Ohtsu,K., Nemoto,K., Tsutsumi,N., Hirai,A. and Nakazono,M.	The rice pyruvate decarboxylase 3 gene, which lacks introns, is transcribed in mature pollen	J. Exp. Bot.	55(394)	145-146	2004	PDC3	pdc3*, pdc3, OsPDC3, OsSTA202
31205	18718933	Moon,S., Giglione,C., Lee,D.Y., An,S., Jeong,D.H., Meinnel,T. and An,G.	Rice peptide deformylase PDF1B is crucial for development of chloroplasts	Plant Cell Physiol.	49(10)	1536-1546	2008	PDF1B2,PDF1A,PDF1B	OsPDF1B2, OsPDF1B2.p,OsPDF1A,OsPDF1B
31206	18421420	Niu,X., Chen,Q. and Wang,X.	OsITL1 gene encoding an inositol 1,3,4-trisphosphate 5/6-kinase is a negative regulator of osmotic stress signaling	Biotechnol. Lett.	30(9)	1687-1692	2008	ITPK1,ITPK5,DSM3	OsITPK1, OsITP5/6K-1, ITP5/6K-1, OsITL2,OsITPK5, OsITP5/6K-5, OsITL3,OsITPK2, ITPK2, OsDSM3, OsITP5/6K-2, OsITL1
31207	18695945	Rajanikant,C., Melzer,M., Rao,B.J. and Sainis,J.K.	Homologous recombination properties of OsRad51, a recombinase from rice	Plant Mol. Biol.	68(4-5)	479-491	2008	COLD11,RAD51A2	OsRAD51A1, RAD51A1, OsCOLD11,OsRad51A2, OsRAD51
31208	18621947	Satoh,H., Shibahara,K., Tokunaga,T., Nishi,A., Tasaki,M., Hwang,S.K., Okita,T.W., Kaneko,N., Fujita,N., Yoshida,M., Hosaka,Y., Sato,A., Utsumi,Y., Ohdan,T. and Nakamura,Y.	Mutation of the Plastidial {alpha}-Glucan Phosphorylase Gene in Rice Affects the Synthesis and Structure of Starch in the Endosperm	Plant Cell	20(7)	1833-1849	2008	SBE4,SBE1,PHO2,ALK,PHO1,SBE3,FLO5,SSI	RBE4, OsSBE4, BEIIa, QEIIb, BEIIA, OsBEIIa,sbe1, Rbe1. Sbe1, sbe1*(QEI), RBE1, BEI, SBE I, QEI, OsBEI, BE1, OsSBE1, OsSBEI, SBEI,Pho2, OsPho2, OsPHOH, PHOH,alk, SSII-3, OsSSIIa, OsSSII-3, SSIIa, SSS2A, OsSSIIaChr6, SS2a,Pho1, OsPho1, OsPHOL, PHOL, OsPHOI, PHOI,SBEIII*, SBEIII, Sbe3, RBE3, QEIIa, QEIIA, BEIIb, BEIIB, SBEIIb, OsBEIIb, sbe3, SBE III, OsSBEIIb, SBEIIb,OsSSIIIa, SSIII-2, OsSSIII-2, OsSS3A, SS3A, SS3a, OsSSSIIIa, SSIIIa, Flo5,OsSSI, SSS 1, SSS1, SS1, OsSS1, SSSI, OsSSSI
31209	18643954	Sengupta,S., Patra,B., Ray,S. and Majumder,A.L.	Inositol methyl tranferase from a halophytic wild rice, Porteresia coarctata Roxb. (Tateoka): regulation of pinitol synthesis under abiotic stress	Plant Cell Environ.	31(10)	1442-1459	2008	_,INO1	PcIMT1,OsINO1, MIPS, IPS, RINO1, OsINO1-1, OsRINO1, OsMIPS1, MIPS1
31210	18820699	Tan,L., Li,X., Liu,F., Sun,X., Li,C., Zhu,Z., Fu,Y., Cai,H., Wang,X., Xie,D. and Sun,C.	Control of a key transition from prostrate to erect growth in rice domestication	Nat Genet	40(11)	1360-1364	2008	PROG1	OsPROG1, ZOS7-02, OsZOS7-02
31211	15020633	Watanabe,H., Saigusa,M., Hase,S., Hayakawa,T. and Satoh,S.	Cloning of a cDNA encoding an ETR2-like protein (Os-ERL1) from deep water rice (Oryza sativa L.) and increase in its mRNA level by submergence, ethylene, and gibberellin treatments	J. Exp. Bot.	55(399)	1145-1148	2004	ETR2	etr2, OsPK1, PK1, ERL1, OsETR2, OsERL1, OS-ETR2, OsERS3
31212	18326788	Welsch,R., Wust,F., Bar,C., Al-Babili,S. and Beyer,P.	A third phytoene synthase is devoted to abiotic stress-induced abscisic acid formation in rice and defines functional diversification of phytoene synthase genes	Plant Physiol.	147(1)	367-380	2008	ABA1,PSY1,PSY3,NCED2,PSY2,NCED3,NCED1	OsABA1, Zep1, OsAba1, Aba2, OsAba2, OsZep1, Zep, OsZep, Aba1, OsABA2, Osaba1, OsZEP-1, OsZEP, OSZEP1, ZEP1, ZEP,OsPSY1 ,OsPSY, PSY, OsPSY3,OSNCED2, OsNCED2, OsNCED5, NCED5,OsPSY2,OSNCED3, OsNCED-3, OsNCED3, OsNCED3a, NCED3a, OsNCED4, NCED4, OsNECD2, OsNCED2b, NCED2b ,OSNCED1, OsNCED-1, OsNCED3, OsNced3, NCED3, OsNCED9, NCED9
31213	18725639	Wu,C., You,C., Li,C., Long,T., Chen,G., Byrne,M.E. and Zhang,Q.	RID1, encoding a Cys2/His2-type zinc finger transcription factor, acts as a master switch from vegetative to floral development in rice	Proc. Natl. Acad. Sci. U.S.A.	105(35)	12915-12920	2008	EHD2/RID1	Ehd2, RID1, OsID1, ID1, OsId1, OsID, Ehd2/RID1/OsId1, RID1/OsID1/Ehd2
31214	18679055	Zhang,W., Chen,J., Zhang,H. and Song,F.	Overexpression of a rice diacylglycerol kinase gene OsBIDK1 enhances disease resistance in transgenic tobacco	Mol. Cells	26(3)	258-264	2008	BIDK1	OsBIDK1, OsDGK1, DGK1
31215	18687877	Zhu,Q.H., Spriggs,A., Matthew,L., Fan,L., Kennedy,G., Gubler,F. and Helliwell,C.	A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains	Genome Res.	18(9)	1456-1465	2008	MIR1846D,MIR1847,MIR1849,MIR1851,MIR1852,MIR1853,MIR1854,MIR1855,MIR1856,MIR1857,MIR1858A,MIR1858B,MIR1859,MIR1861A,MIR1861B,MIR1861F,MIR1861I,MIR1861L,MIR1861C,MIR1861D,MIR1861E,MIR1861K,MIR1861M,MIR1861G,MIR1861H,MIR1861J,MIR1861N,MIR1862A,MIR1862B,MIR1862C,MIR1862E,MIR1864,MIR1865,MIR1868,MIR1869,MIR1870,MIR1872,MIR1875,MIR1876,MIR1878,MIR1880,MIR1881,MIR1883A,MIR1883B,MIR806I_AS,MIR806J_AS,MIR812G,MIR812H,MIR812I,MIR812J,MIR1428B,MIR1428C,MIR1423,MIR1867,MIR1860,MIR1846B,MIR1873,MIR1871,MIR812F,MIR1848,MIR1866,TAS3A1,MIR1846A,MIR1877,miR1874,MIR1882A,TAS3B1,MIR1882B,MIR531B,TAS3B2,MIR1882C,MIR1882D,MIR1882F,MIR1882G,MIR1882H,MIR1846C,MIR1428E,MIR1862D,MIR529B,MIR1879,MIR1428D,MIR1863,MIR1882E,MIR1850	miR1846d, osa-miR1846d, osa-MIR1846dosa-miR1846d-3p osa-miR1846d-5p,miR1847, osa-miR1847, osa-MIR1847,miR1849, osa-miR1849, osa-MIR1849,miR1851, osa-miR1851, osa-MIR1851,miR1852, osa-miR1852, osa-MIR1852,miR1853, osa-miR1853, osa-MIR1853osa-miR1853-3p,miR1854, osa-miR1854, osa-MIR1854,miR1855, osa-miR1855, osa-MIR1855,miR1856, osa-miR1856, osa-MIR1856,miR1857, osa-miR1857, osa-MIR1857osa-miR1857-3p osa-miR1857-5p,miR1858a, osa-miR1858a, osa-MIR1858a,miR1858b, osa-miR1858b, osa-MIR1858b,miR1859, osa-miR1859, osa-MIR1859 ,miR1861a, osa-miR1861a, osa-MIR1861a,miR1861b, osa-miR1861b, osa-MIR1861b,miR1861f, osa-miR1861f, osa-MIR1861f,miR1861i, osa-miR1861i, osa-MIR1861i,miR1861l, osa-miR1861l, osa-MIR1861l,miR1861c, osa-miR1861c, osa-MIR1861c,miR1861d, osa-miR1861d, osa-MIR1861d,miR1861e, osa-miR1861e, osa-MIR1861e,miR1861k, osa-miR1861k, osa-MIR1861k,miR1861m, osa-miR1861m, osa-MIR1861m,miR1861g, osa-miR1861g, osa-MIR1861g,miR1861h, osa-miR1861h, osa-MIR1861h,miR1861j, osa-miR1861j, osa-MIR1861j,miR1861n, osa-miR1861n, osa-MIR1861n,miR1862a, osa-miR1862a, osa-MIR1862a,miR1862b, osa-miR1862b, osa-MIR1862b,miR1862c, osa-miR1862c, osa-MIR1862c,miR1862e, osa-miR1862e, osa-MIR1862e,miR1864, osa-miR1864, osa-MIR1864,miR1865, osa-miR1865, osa-MIR1865osa-miR1865-3p osa-miR1865-5p,miR1868, osa-miR1868, osa-MIR1868,miR1869, osa-miR1869, osa-MIR1869,miR1870, osa-miR1870, osa-MIR1870osa-miR1870-3p osa-miR1870-5p,miR1872, osa-miR1872, osa-MIR1872,miR1875, osa-miR1875, osa-MIR1875,miR1876, osa-miR1876, osa-MIR1876,miR1878, osa-miR1878, osa-MIR1878,miR1880, osa-miR1880, osa-MIR1880,miR1881, osa-miR1881, osa-MIR1881,miR1883a, osa-miR1883a, osa-MIR1883a,miR1883b, osa-miR1883b, osa-MIR1883b,miR806i_as, osa-MIR806i_as,miR806j_as, osa-MIR806j_as,miR812g, osa-miR812g, osa-MIR812g,miR812h, osa-miR812h, osa-MIR812h,miR812i, osa-miR812i, osa-MIR812i,miR812j, osa-miR812j, osa-MIR812j,miR1428b, osa-miR1428b, osa-MIR1428b,miR1428c, osa-miR1428c, osa-MIR1428c,miR1423, osa-miR1423, osa-MIR1423, miR1423bosa-miR1423-5p,miR1867, osa-miR1867, osa-MIR1867,miR1860, osa-miR1860, osa-MIR1860osa-miR1860-3p osa-miR1860-5p,miR1846b, osa-miR1846b, osa-MIR1846bosa-miR1846b-5p,miR1873, osa-miR1873, osa-MIR1873,miR1871, osa-miR1871, osa-MIR1871,miR812f, osa-miR812f, osa-MIR812f,miR1848, osa-miR1848, osa-MIR1848,miR1866, osa-miR1866, osa-MIR1866, Osa-miR1866-5p, Osa-miR1866-3p,TAS3a1, OsTAS3a1, OsTAS3a, TAS3a,miR1846a, osa-miR1846a, osa-MIR1846aosa-miR1846a-5p,miR1877, osa-miR1877, osa-MIR1877,OsmiR1874, osa-MIR1874osa-miR1874 osa-miR1874-3p,miR1882a, osa-miR1882a, osa-MIR1882a,TAS3b1, OsTAS3b1, OsTAS3a, TAS3a, OsTAS3b, TAS3b,miR1882b, osa-miR1882b, osa-MIR1882b,miR531b, osa-MIR531b,OsTAS3b2, TAS3b2, OsTAS3c, TAS3c,miR1882c, osa-miR1882c, osa-MIR1882c,miR1882d, osa-miR1882d, osa-MIR1882d,miR1882f, osa-miR1882f, osa-MIR1882f,miR1882g, osa-miR1882g, osa-MIR1882g,miR1882h, osa-miR1882h, osa-MIR1882h,miR1846c, osa-miR1846c, osa-MIR1846c,OsmiR1428e, miR1428e, osa-miR1428e, osa-MIR1428e, miR1428e_3posa-miR1428e-3p,miR1862d, osa-miR1862d, osa-MIR1862d,miR529b, Osa-miR529b, OsmiR529b,miR1879, osa-miR1879, osa-MIR1879,miR1428d, osa-miR1428d, osa-MIR1428d,miR1863, osa-miR1863, osa-MIR1863, osa-MIR1863a, osa-miR1863a,miR1882e, osa-miR1882e, osa-MIR1882e, osa-miR1882e-5p,miR1850, osa-miR1850, osa-MIR1850, osa-miR1850.1, osa-miR1850.2, osa-miR1850.3
31216	18757558	Azimzadeh,J., Nacry,P., Christodoulidou,A., Drevensek,S., Camilleri,C., Amiour,N., Parcy,F., Pastuglia,M. and Bouchez,D.	Arabidopsis TONNEAU1 Proteins Are Essential for Preprophase Band Formation and Interact with Centrin	Plant Cell	20(8)	2146-2159	2008		
31217		Masao Iwamoto, Hiromi Higo1 and Kenichi Higo	Differential diurnal expression of rice catalase genes: the 5-flanking region of CatA is not sufficient for circadian control	Plant Sci.	151	39-46	2000	NOE1,CATA	CATC, OsCat, OsCatC, OsCATC, OsNOE1, noe1, catC, OsCATC, CAT3, OsCAT3, LLM9428, OsLLM9428,CATA1, Cat A1*, OSCAT-A, Cat2, CatA1, CAT-A, OsCatA, OsCAT, CAT, catA, OSCATA, OsCATc, OsCATA, OsCAT1A, CAT1, OsCAT1, OsCATC, OsCAT2
31218	8900187	Sheu JJ, Yu TS, Tong WF, Yu SM.	Carbohydrate starvation stimulates differential expression of rice alpha-amylase genes that is modulated through complicated transcriptional and posttranscriptional processes.	J. Biol. Chem.	271(43)	26998-7004	1996	AMY3D,AMY1B,AMY2A,AMY1C,AMY3B,AMY3C,AMY3A,AMY1A,AMY3E	Amy3D/E*(RAmy3D/E), alpha Amy3, AmyII-4, AMY1.3, Amy3D, Amy3D/E*, RAmy3D/E, Amy3D_E, Amy8, aAmy3, RAmy3D, OsAmy3D, alphaAmy3, OsRamy3D,Amy1B*(RAmy1B), AMYC, RAmy1B, Amy2, Amy1B, Osamy-c, OSamy-c, OSamy--c ,Amy2A*(RAmy2A), AMY1.5, AMYC2, RAmy2A, Amy4, Amy2A,Amy1A/C*(RAmy1A/C), alpha Amy10, Amy1C, RAmy1A/C, Amy1A/C*, Amy3, RAmy1C, OsAmy1C, alphaAmy10-C,Amy3A/B/C*(RAmy3A/B/C), alpha Amy6, AmyII-5, AMY1.6, Amy1.6, Amy3B, BRAmy3A/B/C, Amy3A/B/C*, Amy6, RAmy3B, alphaAmy6-C, OsRamy3B, OsAmy3C,Amy3A/B/C*(RAmy3A/B/C), AmyII-6, AMY1.7, Amy3C, RAmy3A/B/C, Amy3A/B/C*, Amy7, AMY3B, RAmy3C, OsAmy3B,Amy3A/B/C*(RAmy3A/B/C), Amy3A, RAmy3A/B/C, Amy3A/B/C*, AMY1.2, Amy5, RAmy3A, OsEnS-129,Amy1A/C*(RAmy1A/C), alpha Amy7, AMY1.1, Amy1A, RAmy1A/C, Amy1A/C*, Amy1, Amy1A_C, OsAmy1A, alphaAmy7-C, RAmy1A, AmyI-1, OsAmyI-1, OsRamy1A,Amy3D/E*(RAmy3D/E), alpha Amy8, alphaAmy8, AmyII-3, AMY1.4, Amy3E, Amy3D/E*, RAmy3D/E, Amy9, RAmy3E, alphaAmy8-C, AMY3E/AMY1.4, OsAmy3E, OsRamy3E
31219	11333304	Mizuno K, Kobayashi E, Tachibana M, Kawasaki T, Fujimura T, Funane K, Kobayashi M, Baba T.	Characterization of an isoform of rice starch branching enzyme, RBE4, in developing seeds.	Plant Cell Physiol.	42(4)	349-57	2001	SBE4	RBE4, OsSBE4, BEIIa, QEIIb, BEIIA, OsBEIIa
31300	18073142	Rice KL,Kees UR,Greene WK	Transcriptional regulation of FHL1 by TLX1/HOX11 is dosage, cell-type and promoter context-dependent.	Biochem. Biophys. Res. Commun.	367	707-13	2008		
31301	18245346	Zhao T,Gu T,Rice HC,McAdams KL,Roark KM,Lawson K,Gauthier SA,Reagan KL,Hewes RS	A Drosophila gain-of-function screen for candidate genes involved in steroid-dependent neuroendocrine cell remodeling.	Genetics	178	883-901	2008		
31302	18388201	Rice LM,Montabana EA,Agard DA	The lattice as allosteric effector: structural studies of alphabeta- and gamma-tubulin clarify the role of GTP in microtubule assembly.	Proc. Natl. Acad. Sci. U.S.A.	105	5378-83	2008		
31303	18392778	Dugas DV,Bartel B	Sucrose induction of Arabidopsis miR398 represses two Cu/Zn superoxide dismutases.	Plant Mol. Biol.	67	403-17	2008		
31304	18398005	Sidhu GK,Rustgi S,Shafqat MN,von Wettstein D,Gill KS	Fine structure mapping of a gene-rich region of wheat carrying Ph1, a suppressor  of crossing over between homoeologous chromosomes.	Proc. Natl. Acad. Sci. U.S.A.	105	5815-20	2008		
31305	18401574	Ochiai K,Uemura S,Shimizu A,Okumoto Y,Matoh T	Boron toxicity in rice (Oryza sativa L.). I. Quantitative trait locus (QTL) analysis of tolerance to boron toxicity.	Theor. Appl. Genet.	117	125-33	2008		
31306	18409027	Fujino K,Sekiguchi H	Site specific cytosine methylation in rice nonautonomous transposable element nDart.	Plant Mol. Biol.	67	511-8	2008	NDART1	nDart, nDART1, nDART
31307	18410482	Wang C,Washida H,Crofts AJ,Hamada S,Katsube-Tanaka T,Kim D,Choi SB,Modi M,Singh S,Okita TW	The cytoplasmic-localized, cytoskeletal-associated RNA binding protein OsTudor-SN: evidence for an essential role in storage protein RNA transport and localization.	Plant J.	55	443-54	2008		
31308	18420595	Uddin MI,Qi Y,Yamada S,Shibuya I,Deng XP,Kwak SS,Kaminaka H,Tanaka K	Overexpression of a new rice vacuolar antiporter regulating protein OsARP improves salt tolerance in tobacco.	Plant Cell Physiol.	49	880-90	2008	_	OsARP, OsCTP
31309	18430767	Hanashiro I,Itoh K,Kuratomi Y,Yamazaki M,Igarashi T,Matsugasako J,Takeda Y	Granule-bound starch synthase I is responsible for biosynthesis of extra-long unit chains of amylopectin in rice.	Plant Cell Physiol.	49	925-33	2008		
31310	18432238	Yang CG,Yi C,Duguid EM,Sullivan CT,Jian X,Rice PA,He C	Crystal structures of DNA/RNA repair enzymes AlkB and ABH2 bound to dsDNA.	Nature	452	961-5	2008		
31311	18433437	Li C,Dubcovsky J	Wheat FT protein regulates VRN1 transcription through interactions with FDL2.	Plant J.	55	543-54	2008		
31312	18438440	Zhang Y,Mao JX,Yang K,Li YF,Zhang J,Huang YX,Shen FC,Zhang CD	Characterization and mapping of a male-sterility mutant, tapetum desquamation (t), in rice.	Genome	51	368-74	2008		
31313	18438637	Srinivas G,Satish K,Murali Mohan S,Nagaraja Reddy R,Madhusudhana R,Balakrishna D,Venkatesh Bhat B,Howarth CJ,Seetharama N	Development of genic-microsatellite markers for sorghum staygreen QTL using a comparative genomic approach with rice.	Theor. Appl. Genet.	117	283-96	2008		
31314	18438730	Baek JM,Han P,Iandolino A,Cook DR	Characterization and comparison of intron structure and alternative splicing between Medicago truncatula, Populus trichocarpa, Arabidopsis and rice.	Plant Mol. Biol.	67	499-510	2008		
31315	18451033	Garg RP,Qian XL,Alemany LB,Moran S,Parry RJ	Investigations of valanimycin biosynthesis: elucidation of the role of seryl-tRNA.	Proc. Natl. Acad. Sci. U.S.A.	105	6543-7	2008		
31316	18451263	Fouquaert E,Peumans WJ,Smith DF,Proost P,Savvides SN,Van Damme EJ	The "old" Euonymus europaeus agglutinin represents a novel family of ubiquitous plant proteins.	Plant Physiol.	147	1316-24	2008		
31317	18470484	Wang Q,Guan Y,Wu Y,Chen H,Chen F,Chu C	Overexpression of a rice OsDREB1F gene increases salt, drought, and low temperature tolerance in both Arabidopsis and rice.	Plant Mol. Biol.	67	589-602	2008	DREB1F	OsERF#027, OsERF027, OsERF27, ERF27, AP2/EREBP#081, AP2/EREBP81, OsDREB1F
31318	18470504	Coram TE,Settles ML,Wang M,Chen X	Surveying expression level polymorphism and single-feature polymorphism in near-isogenic wheat lines differing for the Yr5 stripe rust resistance locus.	Theor. Appl. Genet.	117	401-11	2008		
31319	18477473	Byun MY,Hong JP,Kim WT	Identification and characterization of three telomere repeat-binding factors in rice.	Biochem. Biophys. Res. Commun.	372	85-90	2008	BIP127,TRBF1,TRBF3	OsBIP127, TRBF2, OsTRBF2, Os2R_MYB99, 2R_MYB99,OsTRBF1,OsTRBF3
31320	18480059	Houston SI,McManus KJ,Adams MM,Sims JK,Carpenter PB,Hendzel MJ,Rice JC	Catalytic function of the PR-Set7 histone H4 lysine 20 monomethyltransferase is essential for mitotic entry and genomic stability.	J. Biol. Chem.	283	19478-88	2008		
31321	18481185	Laspina NV,Vega T,Seijo JG,Gonzalez AM,Martelotto LG,Stein J,Podio M,Ortiz JP,Echenique VC,Quarin CL,Pessino SC	Gene expression analysis at the onset of aposporous apomixis in Paspalum notatum.	Plant Mol. Biol.	67	615-28	2008		
31322	18491141	Nuruzzaman M,Gupta M,Zhang C,Wang L,Xie W,Xiong L,Zhang Q,Lian X	Sequence and expression analysis of the thioredoxin protein gene family in rice.	Mol. Genet. Genomics	280	139-51	2008	WP2,TRXH5,TRXX,PDIL2-2,TRX29,PDIL2-3,PITA,PDIL5-3,PDIL1-5,PDIL2-1,TRXH8,TRX19,TRX1,PDIL5-2,PDIL1-2,PDIL1-4,TRXH4,PDIL1-3,TRX26,TRX22,TRX4,TRX11,TRX3,TRX15,PDIL1-1,PDIL5-1,TRX14,TRX20,TRX8,TRXH	TRXZ, OsPAP10, PAP10, OsPAP10/OsTRXz, OsTRXz, TRXz, OsTrx25, Trx25,OsTRXh5, OsTrx24, Trx24, Os4, OsTrxh4,Trx x, OsTrx x, OsTrx16, Trx16,PDIL2;2, OsPDIL2;2, OsPDIL2-2, OsTrx02, Trx02, OsTrx2, Trx2,OsTRX m5, Ostrxm5, OsTRXM5, TRXM5, OsTrxm, OsTrx29, Trx29,PDIL2;3, OsPDIL2;3, PDIL 2-3, OsPDIL2-3, OsTrx27, Trx27,Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30, Trx30,PDIL5;3, PDIL 5-3, OsPDIL5-3, OsTrx06, Trx06, OsTrx6, Trx6,PDIL1;5, PDIL 1-5, OsPDIL1-5, OsTrx21, Trx21,PDIL2;1, OsPDIL2;1, OsPDIL2-1, OsTrx17, Trx17,OsTRXh8, OsTrx18, Trx18, Os5, OsTrxh5,OsTrx19, Trx19,OsTRXh7, TRXh7, OsTrx1, Trx1, OsTrx01, Trx01,PDIL5;2, OsPDIL5;2, OsPDIL5-2, OsTrx12, Trx12,PDIL1;2, OsPDIL1;2, PDIL 1-2, OsPDIL1-2, OsTrx13, Trx13,PDIL1;4, PDIL 1-4, OsPDIL1-4, OsTrx05, Trx05, OsTrx5, Trx5,OsTRXh4, OsTrx10, Trx10, Os3, OsTrxh3,PDIL1;3, PDIL 1-3, OsPDIL1-3, OsTrx07, Trx07, OsTrx7, Trx7,OsTRXh3, TRXH3, OsTrx26, Trx26, antiSTR1, OsTDX, TDX,OsTrx22, Trx22,OsTrx04, Trx04, OsTrx4, Trx4,OsTrx11, Trx11,OsTRXh10, TRXh10, OsTRX2, TRX2, TRXF, OsTRXF, OsTrx03, Trx03, OsTrx3, Trx3,OsTrx15, Trx15,OsPDIL1;1, PDIL1;1, PDIL 1-1, PDI, OsPDIL1-1, OsTrx28, Trx28,PDIL5;1, OsPDIL5;1, PDIL 5-1, OsPDIL5-1, OsTrx09, Trx09, OsTrx9, Trx9,OsTRX m2, TRX m2, OsTRXM2, TRXM2, OsTrx14, Trx14,OsTRXh9, TRXH9, OsTrx20, Trx20,OsTRXM1, TRXM1, OsTrx08, Trx08, OsTrx8, Trx8,trxh, Trx-H, OsTRXh1, TRXh1, OsTrxh1, Os1, OsTrx23, Trx23, RPP13-1
31323	18492871	Wang JW,Schwab R,Czech B,Mica E,Weigel D	Dual effects of miR156-targeted SPL genes and CYP78A5/KLUH on plastochron length  and organ size in Arabidopsis thaliana.	Plant Cell	20	1231-43	2008		
31324	18493037	Chen CL,Chen CJ,Vallon O,Huang ZP,Zhou H,Qu LH	Genomewide analysis of box C/D and box H/ACA snoRNAs in Chlamydomonas reinhardtii reveals an extensive organization into intronic gene clusters.	Genetics	179	21-30	2008		
31325	18493049	Shen Y,Liu Y,Liu L,Liang C,Li QQ	Unique features of nuclear mRNA poly(A) signals and alternative polyadenylation in Chlamydomonas reinhardtii.	Genetics	179	167-76	2008		
31326	18495384	Guo AY,Zhu QH,Gu X,Ge S,Yang J,Luo J	Genome-wide identification and evolutionary analysis of the plant specific SBP-box transcription factor family.	Gene	418	1-8	2008		
31327	18496756	Liu H,Zhang H,Yang Y,Li G,Yang Y,Wang X,Basnayake BM,Li D,Song F	Functional analysis reveals pleiotropic effects of rice RING-H2 finger protein gene OsBIRF1 on regulation of growth and defense responses against abiotic and biotic stresses.	Plant Mol. Biol.	68	17-30	2008	BIRF1	OsBIRF1,  OsRING50, RING50
31328	18506581	Aleman L,Kitamura J,Abdel-mageed H,Lee J,Sun Y,Nakajima M,Ueguchi-Tanaka M,Matsuoka M,Allen RD	Functional analysis of cotton orthologs of GA signal transduction factors GID1 and SLR1.	Plant Mol. Biol.	68	1-16	2008	SLR1	slr1-1, slr1, slr, GAI, OsGAI, OsSLR1, Os SLR1, OsRGA1, OsGRAS-18, OsGRAS-18, GRAS-18, GRAS18, SLR-1
31329	18508761	Liu Y,Matthews KS,Bondos SE	Multiple intrinsically disordered sequences alter DNA binding by the homeodomain  of the Drosophila hox protein ultrabithorax.	J. Biol. Chem.	283	20874-87	2008		
31330	18508959	Conner JA,Goel S,Gunawan G,Cordonnier-Pratt MM,Johnson VE,Liang C,Wang H,Pratt LH,Mullet JE,Debarry J,Yang L,Bennetzen JL,Klein PE,Ozias-Akins P	Sequence analysis of bacterial artificial chromosome clones from the apospory-specific genomic region of Pennisetum and Cenchrus.	Plant Physiol.	147	1396-411	2008		
31331	18511458	Tokunaga T,Miyata Y,Fujikawa Y,Esaka M	RNAi-mediated knockdown of the XIP-type endoxylanase inhibitor gene, OsXIP, has no effect on grain development and germination in rice.	Plant Cell Physiol.	49	1122-7	2008	_	OsXIP, XIP
31332	18516584	Barret P,Brinkmann M,Beckert M	A major locus expressed in the male gametophyte with incomplete penetrance is responsible for in situ gynogenesis in maize.	Theor. Appl. Genet.	117	581-94	2008		
31333	18522800	Saito T,Abe D,Sekiya K	Sakuranetin induces adipogenesis of 3T3-L1 cells through enhanced expression of PPARgamma2.	Biochem. Biophys. Res. Commun.	372	835-9	2008		
31334	18522943	Brazier-Hicks M,Evans KM,Cunningham OD,Hodgson DR,Steel PG,Edwards R	Catabolism of glutathione conjugates in Arabidopsis thaliana. Role in metabolic reactivation of the herbicide safener fenclorim.	J. Biol. Chem.	283	21102-12	2008		
31335	18535011	Ishizaki K,Chiyoda S,Yamato KT,Kohchi T	Agrobacterium-mediated transformation of the haploid liverwort Marchantia polymorpha L., an emerging model for plant biology.	Plant Cell Physiol.	49	1084-91	2008		
31336	18539606	Banuelos MA,Haro R,Fraile-Escanciano A,Rodriguez-Navarro A	Effects of polylinker uATGs on the function of grass HKT1 transporters expressed  in yeast cells.	Plant Cell Physiol.	49	1128-32	2008		
31337	18547394	Pata MO,Wu BX,Bielawski J,Xiong TC,Hannun YA,Ng CK	Molecular cloning and characterization of OsCDase, a ceramidase enzyme from rice.	Plant J.	55	1000-9	2008	CDASE	OsCDase
31338	18553067	Lehmensiek A,Sutherland MW,McNamara RB	The use of high resolution melting (HRM) to map single nucleotide polymorphism markers linked to a covered smut resistance gene in barley.	Theor. Appl. Genet.	117	721-8	2008		
31339	18553105	Park DS,Song MY,Park SK,Lee SK,Lee JH,Song SY,Eun MY,Hahn TR,Sohn JK,Yi G,Nam MH,Jeon JS	Molecular tagging of the Bph1 locus for resistance to brown planthopper (Nilaparvata lugens Stal) through representational difference analysis.	Mol. Genet. Genomics	280	163-72	2008	BPH1,LOX11,_,_	Bph1,OsLOX11, OsRCI-1, RCI-1, OsBphi262, OsLOX12, OsLOX2.2, LOX2.2, LOX2.1, OsLOX2.1, OsLOX14, LOX14,OsBphi262,OsBphi237
31340	18564381	Chen H,Samadder PP,Tanaka Y,Ohira T,Okuizumi H,Yamaoka N,Miyao A,Hirochika H,Ohira T,Tsuchimoto S,Ohtsubo H,Nishiguchi M	OsRecQ1, a QDE-3 homologue in rice, is required for RNA silencing induced by particle bombardment for inverted repeat DNA, but not for double-stranded RNA.	Plant J.	56	274-86	2008	-	OsRecQ1
31341	18567825	Itoh J,Hibara K,Sato Y,Nagato Y	Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.	Plant Physiol.	147	1960-75	2008	HB4,LF1,HOX9,HOX33,HOX29	OSHB4, OsHox32, HOX32, OsHB4, Oshox32, PHB3, OsHDZ13, OsHDZIP13, HDZ13, HDZIP13,HOX10, Oshox10, OsHox10, OsHB1, HB1, OSHB1, LF1/OsHB1, OsLF1, OsHDZ9, OsHDZIP9, HDZ9, HDZIP9,Oshox9, OsHox9, OsHB2, HB2, OSHB2, OsHDZ37, OsHDZIP37, HDZ37, HDZIP37,Oshox33, OsHox33, OSHB3, HB3, SIP22, OsSIP22, OsHDZ40, OsHDZIP40, HDZ40, HDZIP40,Oshox29, OsHox29, OSHB5, HB5
31342	18571878	Liu H,Wang X,Zhang H,Yang Y,Ge X,Song F	A rice serine carboxypeptidase-like gene OsBISCPL1 is involved in regulation of defense responses against biotic and oxidative stress.	Gene	420	57-65	2008		
31343	18579782	de Meaux J,Hu JY,Tartler U,Goebel U	Structurally different alleles of the ath-MIR824 microRNA precursor are maintained at high frequency in Arabidopsis thaliana.	Proc. Natl. Acad. Sci. U.S.A.	105	8994-9	2008		
31344	18586868	Vega-Sanchez ME,Zeng L,Chen S,Leung H,Wang GL	SPIN1, a K homology domain protein negatively regulated and ubiquitinated by the  E3 ubiquitin ligase SPL11, is involved in flowering time control in rice.	Plant Cell	20	1456-69	2008	SE1,SPIN1,HD3A,SPL11	Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, OsHd1,  Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,Spin1, OsSPIN1, OsKH16, KH16,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,spl11, spl11*, OsPUB11, PUB11,  OsPUB11/SPL11, PUB11/SPL11
31345	18587653	Kim NS,Kim TG,Kim OH,Ko EM,Jang YS,Jung ES,Kwon TH,Yang MS	Improvement of recombinant hGM-CSF production by suppression of cysteine proteinase gene expression using RNA interference in a transgenic rice culture.	Plant Mol. Biol.	68	263-75	2008		
31346	18593744	Ohmori Y,Abiko M,Horibata A,Hirano HY	A transposon, Ping, is integrated into intron 4 of the DROOPING LEAF gene of rice, weakly reducing its expression and causing a mild drooping leaf phenotype.	Plant Cell Physiol.	49	1176-84	2008	DL	OsDL, dl(lop), lop, dl, dl1, OsDRPq3, DRPq3
31347	18596062	Itoh J,Sato Y,Nagato Y	The SHOOT ORGANIZATION2 gene coordinates leaf domain development along the central-marginal axis in rice.	Plant Cell Physiol.	49	1226-36	2008		
31348	18614707	Alkhalfioui F,Renard M,Frendo P,Keichinger C,Meyer Y,Gelhaye E,Hirasawa M,Knaff DB,Ritzenthaler C,Montrichard F	A novel type of thioredoxin dedicated to symbiosis in legumes.	Plant Physiol.	148	424-35	2008		
31349	18615082	Niu F,Silver PG,Daley TM,Cheng X,Majer EL	Preseismic velocity changes observed from active source monitoring at the Parkfield SAFOD drill site.	Nature	454	204-8	2008		
31350	18626020	Ma JF,Yamaji N,Mitani N,Xu XY,Su YH,McGrath SP,Zhao FJ	Transporters of arsenite in rice and their role in arsenic accumulation in rice grain.	Proc. Natl. Acad. Sci. U.S.A.	105	9931-5	2008	LSI2,LSI1	Lsi2, SIET1, OsLsi2, OsSIET1,lsi1, NIP2-1, OsNIP2;1, NIP2;1, OsLsi1, lsi(t), OsNIP2.1/OsLsi1/OsSIIT1, OsNIP2.1, NIP2.1
31351	18626624	Kofler R,Bartos J,Gong L,Stift G,Suchankova P,Simkova H,Berenyi M,Burg K,Dolezel J,Lelley T	Development of microsatellite markers specific for the short arm of rye (Secale cereale L.) chromosome 1.	Theor. Appl. Genet.	117	915-26	2008		
31352	18632585	Baani M,Liesack W	Two isozymes of particulate methane monooxygenase with different methane oxidation kinetics are found in Methylocystis sp. strain SC2.	Proc. Natl. Acad. Sci. U.S.A.	105	10203-8	2008		
31353	18632665	Zhai P,Stanworth C,Liu S,Silberg JJ	The human escort protein Hep binds to the ATPase domain of mitochondrial hsp70 and regulates ATP hydrolysis.	J. Biol. Chem.	283	26098-106	2008		
31354	18633717	Kim NS,Kim TG,Jang YS,Shin YJ,Kwon TH,Yang MS	Amylase gene silencing by RNA interference improves recombinant hGM-CSF production in rice suspension culture.	Plant Mol. Biol.	68	369-77	2008		
31355	18657232	Goepfert S,Vidoudez C,Tellgren-Roth C,Delessert S,Hiltunen JK,Poirier Y	Peroxisomal Delta(3),Delta(2)-enoyl CoA isomerases and evolution of cytosolic paralogues in embryophytes.	Plant J.	56	728-42	2008		
31356	18670134	Tsuchimoto S,Hirao Y,Ohtsubo E,Ohtsubo H	New SINE families from rice, OsSN, with poly(A) at the 3' ends.	Genes Genet. Syst.	83	227-36	2008	_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_	OsSN1-1,OsSN1-2,OsSN1-6,OsSN1-10,OsSN1-12,OsSN1-13,OsSN1-25,OsSN1-27,OsSN1-37,OsSN1-51,OsSN1-61,OsSN2-1,OsSN2-2,OsSN2-7,OsSN2-12,OsSN2-14,OsSN2-30,OsSN2-50,OsSN2-8,OsSN3-1,OsSN3-30,OsSN3-42,OsSN3-59,OsSN3-69,OsSN3-76,OsSN3-80,OsSN3-89,OsSN3-81
31357	18670140	Fujioka T,Kaneko F,Kazama T,Suwabe K,Suzuki G,Makino A,Mae T,Endo M,Kawagishi-Kobayashi M,Watanabe M	Identification of small RNAs in late developmental stage of rice anthers.	Genes Genet. Syst.	83	281-4	2008		
31359	17570562	Perales L, Pe?arrubia L, Cornejo MJ.	Induction of a polyubiquitin gene promoter by dehydration stresses in transformed rice cells.	J. Plant Physiol.	165(2)	159-71	2008		
31360	17765359	Kim TH, Park JH, Kim MC, Cho SH.	Cutin monomer induces expression of the rice OsLTP5 lipid transfer protein gene.	J. Plant Physiol.	165(3)	345-9	2008	LTP5	OsLTP5
31362	18210155	Takasaki H, Mahmood T, Matsuoka M, Matsumoto H, Komatsu S.	Identification and characterization of a gibberellin-regulated protein, which is ASR5, in the basal region of rice leaf sheaths.	Mol. Genet. Genomics	279(4)	359-70	2008	ASR5	OsASR5, Asr5, Asr1, OsASR1, OsASR2, ASR2
31363	18219493	Nigam N, Singh A, Sahi C, Chandramouli A, Grover A.	SUMO-conjugating enzyme (Sce) and FK506-binding protein (FKBP) encoding rice (Oryza sativa L.) genes: genome-wide analysis, expression studies and evidence for their involvement in abiotic stress response.	Mol. Genet. Genomics	279(4)	371-83	2008	SCE2,FKBP20-1A,_	OsSce2, Sce2, OsUBC2, UBC2, OsSCE1a, SCE1a, OsSCE1a.1, OsSCE1a.2,OsFKBP20-1a, OsFKBP20,OsSce1, OsUBC1, UBC1, OsSCE1b, SCE1b, OsSCE1b.1, OsSCE1b.2
31364	18320227	Lu J, Sivamani E, Azhakanandam K, Samadder P, Li X, Qu R.	Gene expression enhancement mediated by the 5' UTR intron of the rice rubi3 gene varied remarkably among tissues in transgenic rice plants.	Mol. Genet. Genomics	279(6)	563-72	2008		
31365	18308761	Fujii S, Toriyama K.	DCW11, down-regulated gene 11 in CW-type cytoplasmic male sterile rice, encoding mitochondrial protein phosphatase 2c is relPlant Cell Physiol.ated to cytoplasmic male sterility.	Plant Cell Physiol.	49(4)	633-40	2008	AOX1A,DCW11	Ao1-1, AOX1a, OsAOX1a, AOX 1a,DCW11, OsPP2C13, PP2C13, OsPP22
31366	18319396	Rose AB, Elfersi T, Parra G, Korf I.	Promoter-proximal introns in Arabidopsis thaliana are enriched in dispersed signals that elevate gene expression.	Plant Cell	20(3)	543-51	2008		
31367	18182026	Woo MO, Ham TH, Ji HS, Choi MS, Jiang W, Chu SH, Piao R, Chin JH, Kim JA, Park BS, Seo HS, Jwa NS, McCouch S, Koh HJ.	Inactivation of the UGPase1 gene causes genic male sterility and endosperm chalkiness in rice (Oryza sativa L.).	Plant J.	54(2)	190-204	2008		
31368	18208517	Lee M, Huang T, Toro-Ramos T, Fraga M, Last RL, Jander G.	Reduced activity of Arabidopsis thaliana HMT2, a methionine biosynthetic enzyme, increases seed methionine content.	Plant J.	54(2)	310-20	2008		
31369	18248596	Zhao X, de Palma J, Oane R, Gamuyao R, Luo M, Chaudhury A, Herv? P, Xue Q, Bennett J.	OsTDL1A binds to the LRR domain of rice receptor kinase MSP1, and is required to limit sporocyte numbers.	Plant J.	54(3)	375-87	2008	MIL2,_,MSP1	OsTDL1A, TDL1A, OsMIL2, OsTDL1A/MIL2, OsTDL1a ,OsTDL1B, TDL1B,Msp1, OsMSP1, OsTMS15, TMS15
31370	18298667	Hochholdinger F, Wen TJ, Zimmermann R, Chimot-Marolle P, da Costa e Silva O, Bruce W, Lamkey KR, Wienand U, Schnable PS.	The maize (Zea mays L.) roothairless 3 gene encodes a putative GPI-anchored, monocot-specific, COBRA-like protein that significantly affects grain yield.	Plant J.	54(5)	888-98	2008	BC1L1,BC1L8	OsBC1L1, OsPCS13, PCS13,OsBC1L8, PCS12, OsPCS12
31371	18049796	Dai M, Hu Y, Ma Q, Zhao Y, Zhou DX.	Functional analysis of rice HOMEOBOX4 (Oshox4) gene reveals a negative function in gibberellin responses.	Plant Mol. Biol.	66(3)	289-301	2008	HOX4	Oshox4, OsHox4, OsHDZ31, OsHDZIP31, HDZ31, HDZIP31
31372	18034312	Inoue H, Takahashi M, Kobayashi T, Suzuki M, Nakanishi H, Mori S, Nishizawa NK.	Identification and localisation of the rice nicotianamine aminotransferase gene OsNAAT1 expression suggests the site of phytosiderophore synthesis in rice.	Plant Mol. Biol.	66(1-2)	193-203	2008	NAAT2,NAAT5,NAAT6,NAAT4,DMAS1,NAAT3,NAAT1	OsNAAT2,OsNAAT5,OsNAAT6,OsNAAT4, OsNAAT1 ,OsDMAS1, OsAKR5, AKR5,OsNAAT3,OsNAAT1
31373	18180880	Li A, Zhang Y, Wu X, Tang W, Wu R, Dai Z, Liu G, Zhang H, Wu C, Chen G, Pan X.	DH1, a LOB domain-like protein required for glume formation in rice.	Plant Mol. Biol.	66(5)	491-502	2008	DH1	OsDH1, OsLBD2-1, LBD2-1, OsLOB16, LOB16
31374	18231866	Furukawa T, Imamura T, Kitamoto HK, Shimada H.	Rice exonuclease-1 homologue, OsEXO1, that interacts with DNA polymerase lambda and RPA subunit proteins, is involved in cell proliferation.	Plant Mol. Biol.	66(5)	519-31	2008	_	OsEXO1, OsExo1, EXO1
31375	18236009	Zou M, Guan Y, Ren H, Zhang F, Chen F.	A bZIP trA bZIP transcription factor, OsABI5, is involved in rice fertility and stress tolerance.	Plant Mol. Biol.	66(6)	675-83	2008	ABI5	OsABI5, OsbZIP10, OsABF1, OREB1, OsABI5-1, OsABI5-2, OsOREB1, OREB1 
31376	18273684	Hu H, You J, Fang Y, Zhu X, Qi Z, Xiong L.	Characterization of transcription factor gene SNAC2 conferring cold and salt tolerance in rice.	Plant Mol. Biol.	67(1-2)	169-81	2008	NAC6,ERD1	OsNAC6, ONAC048, NAC48, SNAC2, SNAC2/OsNAC6, OsNAC6/ONAC048, OsSNAC2, SNAC-2, OsSNAC-2, OsNAC2,CLPD1, ClpD1, OsERD1, OSClpD, osClpD, OsClpD1, OsClpD1.1, OsClpD1.2, OsClpD1.3, OsClpD1.4 
31377	18354041	Lee S, Woo YM, Ryu SI, Shin YD, Kim WT, Park KY, Lee IJ, An G.	Further characterization of a rice AGL12 group MADS-box gene, OsMADS26.	Plant Physiol.	147(1)	156-68	2008		
31378	18274724	Liu G, Zhang Z, Zhu H, Zhao F, Ding X, Zeng R, Li W, Zhang G.	Detection of QTLs with additive effects and additive-by-environment interaction effects on panicle number in rice (Oryza sativa L.) with single-segment substitution lines.	Theor. Appl. Genet.	116(7)	923-31.	2008		
31379	18335199	Jiang W, Chu SH, Piao R, Chin JH, Jin YM, Lee J, Qiao Y, Han L, Piao Z, Koh HJ.	Fine mapping and candidate gene analysis of hwh1 and hwh2, a set of complementary genes controlling hybrid breakdown in rice.	Theor. Appl. Genet.	116	1117	2008	HWH2,HWH1	OsHWH2, AZT5, OsAZT5,hwh1
31380	16254725	Chen ZX, Wu JG, Ding WN, Chen HM, Wu P, Shi CH.	Morphogenesis and molecular basis on naked seed rice, a novel homeotic mutation of OsMADS1 regulating transcript level of AP3 homologue in rice.	Planta.	223(5)	882-90	2006	LHS1	OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO, OsLHS1, OsLG3b, LG3b, qLGY3, LGY3, DLN80, OsDLN80, OLR, OsOLR, GW3p6, OsGW3p6, OsMADS1GW3p6, MADS1GW3p6, qLGY3/OsLG3b/GW3p6
31381		C. C. Su , J. Wan , H. Q. Zhai, C. M. Wang , L. H. Sun , H. Yasui and A. Yoshimura	A new locus for resistance to brown planthopper identified in the indica rice variety DV85.	Plant Breeding	124	93-95	2005	qBPH11	Qbph11
31383	18313797	Hu,Y., Zhao,L., Chong,K. and Wang,T.	Overexpression of OsERF1, a novel rice ERF gene, up-regulates ethylene-responsive genes expression besides affects growth and development in Arabidopsis	J. Plant Physiol.	165(16)	1717-1725	2008	ERF93	OsERF1, ERF1, OsERF#093, OsERF093, OsERF93, AP2/EREBP#168, AP2/EREBP168
31384	18820696	Jin,J., Huang,W., Gao,J.P., Yang,J., Shi,M., Zhu,M.Z., Luo,D. and Lin,H.X.	Genetic control of rice plant architecture under domestication	Nat Genet	40(11)	1365-1369	2008	PROG1	OsPROG1, ZOS7-02, OsZOS7-02
31386	18726583	Kim,S.I., Andaya,C.B., Newman,J.W., Goyal,S.S. and Tai,T.H.	Isolation and characterization of a low phytic acid rice mutant reveals a mutation in the rice orthologue of maize MIK	Theor. Appl. Genet.	117(8)	1291-1301	2008	_	OsMIK, LPA
31387	0	Long,Y., Zhao,L., Niu,B., Su,J., Wu,H., Chen,Y., Zhang,Q., Guo,J., Zhuang,C., Mei,M., Xia,J., Wang,L., Wu,H.B. and Liu,Y.-G.	Hybrid male sterility in rice controlled by interaction between divergent alleles of two adjacent genes	Proc. Natl. Acad. Sci. U.S.A.			2008		
31388	18726584	Matsubara,K., Kono,I., Hori,K., Nonoue,Y., Ono,N., Shomura,A., Mizubayashi,T., Yamamoto,S., Yamanouchi,U., Shirasawa,K., Nishio,T. and Yano,M.	Novel QTLs for photoperiodic flowering revealed by using reciprocal backcross inbred lines from crosses between japonica rice cultivars	Theor. Appl. Genet.	117(6)	935-945	2008	SE1,HD6,HD16,HD3B,E3,EF1	Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, OsHd1,  Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,Hd6(t)*, OSCKA2, OsCKA2, CKA2, OsCKA2-1, CKA2-1, Hd6/CK2alpha, CK2alpha,Hd16, EL1, CK1, Hd16/CKI, Hd16/EL1,Hd17, EF7, Ef7, OsELF3-1, ELF3-1, OsELF3, ELF3, ELF3_chr.6, OsELF3.1, ELF3.1, OsELF3a, ELF3a,,Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 
31391	17112320	Tang,T., Lu,J., Huang,J., He,J., McCouch,S.R., Shen,Y., Kai,Z., Purugganan,M.D., Shi,S. and Wu,C.-I.	Genomic Variation in Rice: Genesis of Highly Polymorphic Linkage Blocks during Domestication	PLoS Genet. 2 (11), e199  REMARK Publication Status: Online-Only	2(11)		2006	GI,PITA,_,RVDE1,SBE1,BTBZ1,SPL7,HKT1,_,_,MSP1,_,_,QSH1,CCA1,CCP1,_,_,_,_	OsGI, Gi, Os-GI,Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30, Trx30,,OsRVDE1, OsVDE, VDE,sbe1, Rbe1. Sbe1, sbe1*(QEI), RBE1, BEI, SBE I, QEI, OsBEI, BE1, OsSBE1, OsSBEI, SBEI,OsBTBZ1,spl7, HSFA4D, HSF10, HSF15, OsHSF15, SP17, OsHsf-15, rHsf10, OsHsfA4d, HSfA4d, lrd13, HSF1,OsHKT1, OsHKT2;1, HKT2;1, Ni (Nipponbare)-OsHKT1, Po (Pokkali)-HKT1, OsHKT1;1, HKT1;1,,,Msp1, OsMSP1, OsTMS15, TMS15,,,qSH1, qsh1, qSH-1, RIL1, OsRIL1 ,OsCCA1, OsLHY, LHY, LHY-like_chr.8, COC1, DLN203, OsDLN203, LEM1, OsLEM1, Nhd1, OsNhd1,DFO1, EMF1, OsDFO1, OsEMF1, OsCCP1,,,OsFbox553, Os_F0250,  OsFBK23, FBK23,Xa21, OsXA21, OsXA21-C11, XA21-C11
31392	0	Tang,X., Wu,H., Jia,M., Yu,X. and He,Y.	Isolation and expressional analysis of cDNA encoding a dsRNA binding protein homolog OsRBP of rice	Zhi Wu Sheng Li Yu Fen Zi Sheng Wu Xue Xue Bao	28(1)	41-45	2002	DRB1-3	OsRBP, OsDRB1b, DRB1b, OsDRB1-3
31393	18820698	Wang,E., Wang,J., Zhu,X., Hao,W., Wang,L., Li,Q., Zhang,L., He,W., Lu,B., Lin,H., Ma,H., Zhang,G. and He,Z.	Control of rice grain-filling and yield by a gene with a potential signature of domestication	Nat Genet	40(11)	1370-1374	2008	GIF1	gif1, CIN2, OsCIN2, OsGIF1, WB1, OsWB1, GIF1/OsCIN2
31394	18281124	Yamauchi,T., Moritoh,S., Johzuka-Hisatomi,Y., Ono,A., Terada,R., Nakamura,I. and Iida,S.	Alternative splicing of the rice OsMET1 genes encoding maintenance DNA methyltransferase	J. Plant Physiol.	165(17)	1774-82	2008	MET1B,MET1A	OsMET1b, OsMET1-2, MET1b, MET1,OsMET1a, OsMET1-1, MET1a, MET1-1, OsMET1, OsDMT702, DMT702
31395	0	Yang,H.J.		Thesis  Department of Biological Sciences, University of Cambridge, Cambridge, United Kingdom			2001		
31396	18594992	Yan,S., Yan,C.J., Zeng,X.H., Yang,Y.C., Fang,Y.W., Tian,C.Y., Sun,Y.W., Cheng,Z.K. and Gu,M.H.	ROLLED LEAF 9, encoding a GARP protein, regulates the leaf abaxial cell fate in rice	Plant Mol. Biol.	68(3)	239-250	2008	RL7,RL8,RL9	rl7,rl8,rl9, SLL1/RL9, SLL1, OsSLL1, OsADD1, ADD1, KANADI1, AH2, OsAH2, CL1, OsCL1
31397	18712516	Zhou,H.F., Zheng,X.M., Wei,R.X., Second,G., Vaughan,D.A. and Ge,S.	Contrasting population genetic structure and gene flow between Oryza rufipogon and Oryza nivara	Theor. Appl. Genet.	117(7)	1181-1189	2008	LHS1	OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO, OsLHS1, OsLG3b, LG3b, qLGY3, LGY3, DLN80, OsDLN80, OLR, OsOLR, GW3p6, OsGW3p6, OsMADS1GW3p6, MADS1GW3p6, qLGY3/OsLG3b/GW3p6
31398	19098269	Ammiraju,J.S., Lu,F., Sanyal,A., Yu,Y., Song,X., Jiang,N., Pontaroli,A.C., Rambo,T., Currie,J., Collura,K., Talag,J., Fan,C., Goicoechea,J.L., Zuccolo,A., Chen,J., Bennetzen,J.L., Chen,M., Jackson,S. and Wing,R.A.	Dynamic Evolution of Oryza Genomes Is Revealed by Comparative Genomic Analysis of a Genus-Wide Vertical Data Set	Plant Cell	20(12)	3191-3209	2008	_,_,_,_,_,_,_,_,_,_,_,_,_,_,ADH2,_,PRX132,_,_,ADH1,_,_,_,_,_,_,_,_,_	RZ53,Os_F0257, Fbox-2,NifS,OsPI4K1, OsPI4K2,,,,OsFbox592, Os_F0128, Fbox-4,  OsFBX417, FBX417,,,,,,,Adh2*, Adh2, OsADH2,Adh3, OsAdh3, ADH2, OsADH2,prx132, prx133, OsPRX132, OsPRX133,OsFbox591, Os_F0435, Fbox-5,  OsFBX416, FBX416,OsFbox594, Os_F0295, Fbox-1,  OsFBX419, FBX419,Adh1, Adh1/2, adh1/adh2, OsADH1,OsFbox593, Os_F0278, Fbox-3,  OsFBX418, FBX418,OsFbox590, Os_F0068, Fbox-6,Os_F0761, Fbox-7,OsFbox589, Os_F0137, Fbox-8,  OsFBX414, FBX414,OsFbox588, Os_F0365, Fbox-10,  OsFBX413, FBX413,Os_F0690, Fbox-12-pseuso,OsFbox586, Os_F0088, Fbox-13,  OsFBX411, FBX411,Fbox-14,Fbox-9-pseudo, Os_F0394,  OsFBX497, FBX497
31399	18573188	Cao,Y., Yang,Y., Zhang,H., Li,D., Zheng,Z. and Song,F.	Overexpression of a rice defense-related F-box protein gene OsDRF1 in tobacco improves disease resistance through potentiation of defense gene expression	Physiol Plant	134(3)	440-452	2008	_	OsDRF1, OsFbox209, Os_F0001,  OsFBX133, FBX133
31400	19027836	Cheng,X., Liu,G., Ye,G., Wang,H., Shen,X., Wu,K., Xie,J. and Altosaar,I.	Screening and cloning of antimicrobial DNA sequences using a vital staining method	Gene	430(1-2)	132-139	2009	LEA3-1,TOND1,GER3,RAB16B,DHN1,LEA16,_,PRPL3	OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3, OsLEA3A, LEA3A,OsTOND1, OsPR5a, PR5a,OsGLP8-2, GLP8-2, OsGER3, GLP16, OsEnS-117, OsCDP8.2, CDP8.2,rab21, OsLEA28, OsRAB16D, OsRab16d, Rab16d, OsRAB16b, XERO1, OsXERO1, OsRD22, RD22,LIP9, OsLIP9, lip9, DHN1, DIP1, OsDip1, OsLEA23, OsDhn1, COR410, OsLEA23/DIP1, DIP1/OsLEA23,OsLEA16,prx33,OsPRPL3
31401	0	Chen,P., Wang,C., Li,K., Chang,J., Wang,Y., Yang,G., Shewry,P.R. and He,G.	Cloning, expression and characterization of novel avenin-like genes in wheat and related species	J. Cereal Sci.	48(3)	734-740	2008	_	
31402	18824474	Fukao,T., Harris,T. and Bailey-Serres,J.	Evolutionary analysis of the Sub1 gene cluster that confers submergence tolerance to domesticated rice	Ann. Bot.	103(2)	143-150	2009	ERF68,SUB1C,SUB1B,SUB1A	OsERF#068, OsERF068, OsERF68, AP2/EREBP#003, AP2/EREBP3, ERF2,Sub1C, OsSUB1C, OsERF#073, OsERF073, ERF073, OsERF73, ERF73, AP2/EREBP#122, AP2/EREBP122, SUB1B,Sub1B, OsSUB1B, OsERF#063, OsERF063, ERF063, OsERF63, ERF63, AP2/EREBP#166, AP2/EREBP166,Sub1A, Sub1A-1, Sub1A-2, OsSUB1A
31403	18808453	Hayashi,K. and Yoshida,H.	Refunctionalization of the ancient rice blast disease resistance gene Pit by the recruitment of a retrotransposon as a promoter	Plant J.	57(3)	413-25	2009	PIT	Pit, Pit(K59), Pit(Npb), Pi-t, PitNpb, PitK59, Pit1, OsPit1
31404	0	Shapter,F.M., Eggler,P., Lee,L.S. and Henry,R.J.	Variation in Granule Bound Starch Synthase I (GBSSI) loci amongst Australian wild cereal relatives (Poaceae)	J. Cereal Sci.	49(1)	4-11	2009	WX1	wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx
31405	19168991	Teranishi,C., Yoshida,K. and Miyashita,N.T.	DNA polymorphism in the SUPERWOMAN1 (SPW1) locus of the wild rice Oryza rufipogon and its related species	Genes Genet. Syst.	83(5)	403-415	2008	SPW1	SPW1, spw1, MADS16, OsMADS16
31407	19825617	Wang,Z., Xing,S., Birkenbihl,R.P. and Zachgo,S.	Conserved Functions of Arabidopsis and Rice CC-Type Glutaredoxins in Flower Development and Pathogen Response	Mol Plant	2	323-35	2009	GRX13,GRX8	OsGRX13, OsROXY1,OsGRX8, OsROXY1, OsROXY2
31408	0	Wu,J., Mizuno,H., Sasaki,T. and Matsumoto,T.	Comparative Analysis of Rice Genome Sequence to Understand the Molecular Basis of Genome Evolution	Rice 1, 119-126  REMARK Publication_Status: Available-Online			2008	ADH1,SD1	Adh1, Adh1/2, adh1/adh2, OsADH1,sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2, OsPHQ1, OsPHq1, PHq1
31409	19074278	Yano,K., Yoshida,S., Muller,J., Singh,S., Banba,M., Vickers,K., Markmann,K., White,C., Schuller,B., Sato,S., Asamizu,E., Tabata,S., Murooka,Y., Perry,J., Wang,T.L., Kawaguchi,M., Imaizumi-Anraku,H., Hayashi,M. and Parniske,M.	From the Cover: CYCLOPS, a mediator of symbiotic intracellular accommodation	Proc. Natl. Acad. Sci. U.S.A.	105(51)	20540-20545	2008	IPD3	OsIPD3, Osipd3, CYCLOPS, IPD3/CYCLOPS, OsCYCLOPS
31410	18980655	Yoshii,M., Shimizu,T., Yamazaki,M., Higashi,T., Miyao,A., Hirochika,H. and Omura,T.	Disruption of a novel gene for a NAC-domain protein in rice confers resistance to Rice dwarf virus	Plant J.	57(4)	615-25	2009	RIM1	ONAC054, ONAC54, NAC54, ONAC054alpha, ONAC054beta
31411	18952859	Yuan,Z., Gao,S., Xue,D.W., Luo,D., Li,L.T., Ding,S.Y., Yao,X., Wilson,Z.A., Qian,Q. and Zhang,D.B.	RETARDED PALEA1 (REP1) Controls Palea Development and Floral Zygomorphy in Rice	Plant Physiol.	149(1)	235-244	2009	REP1,FC1,TIG1	OsTCP24, REP1, TCP24, SDP1, SDP1/REP1, OsTb2, Tb2 ,fc1, OsTB1, tb1, OsTB1/FC1, Os TB1, TB1, OsFC1, MP3, OsMP3,OsTCP22, OsTCP15, TCP22, TCP15, OsTIG1
31412	19033526	Yu,Y., Tang,T., Qian,Q., Wang,Y., Yan,M., Zeng,D., Han,B., Wu,C.I., Shi,S. and Li,J.	Independent Losses of Function in a Polyphenol Oxidase in Rice: Differentiation in Grain Discoloration between Subspecies and the Role of Positive Selection under Domestication	Plant Cell	20(11)	2946-2959	2008	BHC	Ph=Bhc(Po), Bhc, Po, Ph, Bh3, PPO, Phr1, BH1
31413	18939965	Zhou,Y., Li,S., Qian,Q., Zeng,D., Zhang,M., Guo,L., Liu,X., Zhang,B., Deng,L., Liu,X., Luo,G., Wang,X. and Li,J.	BC10, A DUF266-Containing and Golgi-Located Type II Membrane Protein, Is Required for Cell Wall Biosynthesis in Rice (Oryza sativa L.)	Plant J.	57(3)	446-62	2008	BC10	BC10, bc10, FC116, FC116/BC10, Osbc10, Osfc116
31414		Ichitani K, Fukuta Y, Taura S, Sato M	Chromosomal location of Hwc2, one of the complementary hybrid weakness genes, in rice	Plant Breeding	120	523-525	2001	HWC2	Hwc2(L2b),L-2-b, Lr2, Hwc-2, L2b, Hwc2
31415		Sato et al.	Gene symbols for gametic effect, sterility and weakness.	RGN	4	46-51	1987	HWC2,HWC1	Hwc2(L2b),L-2-b, Lr2, Hwc-2, L2b, Hwc2,Hwc1(L2a),L-2-a, Lr1, Hwc-1, L2a
31416	17375279	Ichitani K, Namigoshi K, Sato M, Taura S, Aoki M, Matsumoto Y, Saitou T, Marubashi W, Kuboyama T.	Fine mapping and allelic dosage effect of Hwc1, a complementary hybrid weakness gene in rice.	Theor. Appl. Genet.	114(8)	1407-15	2007	HWC1	Hwc1(L2a),L-2-a, Lr1, Hwc-1, L2a
31417		Nino-Liu, D.O., P.C. Ronald and A.J. Bogdanove	Pathogen profile Xanthomonas oryzae pathovars: model pathogens of a model crop.	Mol. Plant Pathol.	7(5)	303-324	2006	XA12,XA14,XA2,XA24,XA8,XA29,XA25,XA11,XA7,XA23,XA4,XA27,XA5,XA10,XA21,XA13,XA1,XA3	Xa12(Xa kg), Xakg, Xa12,Xa14,Xa2,xa24(t)*, xa24,xa8,Xa29,Xa25(t), Xa25*, Xa25, Xa-25(t),Xa11(Xa pt), Xa11, Xapt,Xa7,Xa23(t)*, Xa23(t), Xa23, Xa23-Ni ,Xa4, Xa4(Xa4a), Xa-4, Xa4-a, WAK, wak, xa4,Xa27(t), Xa27(t)*, Xa27,xa5, xa-5, Xa5, TFIIAy, OsTFIIAgamma5, TFIIAgamma5, OsTFIIAgamma5/Xa5,Xa10, Xa-10,Xa21*, Xa21, OsXA21,xa13, Xa13, Os8N3, Os-8N3, 8N3, OsSWEET11, SWEET11, OsSWEET11/Xa13, Xa13/Os8N3/SWEET11, Os8N3/Xa13, OsSWEET11/Os8N3, OsSWEET11a, SWEET11a,Xa1(Xe), Xe, Xa1, Xa-1,Xa-3, Xa3 (Xa4b, Xa6, Xa9, Xa w), Xa3, Xaw, Xa6, Xa9, Xa4-b, XA26, Xa26(t), Xa26(t)*, Xa26, RKb, MRKb, MRKB, TRKb, Xa3/Xa26
31418	18943128	Lee, K. S., Rasabandith, S., Angeles, E.R. and Khush, G. S.	Inheritance of resistance to bacterial blight in 21 cultivars of rice.	Phytopathology	93	147-152	2003	XA28	xa28
31419	15473325	Tan, G., Ren, X., Weng, Q. M., Shi, Z. Y., Zhu, L. L. and He, G. C.	Mapping of a resistance gene to bacterial blight in rice line introgrssed from Oryza officinalis.	Acta Genetica Sinica	31(7)	714-729	2004	XA29	Xa29
31420		Jin, X., C. Wang, Q. Yang, Q. Jiang, Y. Fan, G. Liu and K. Zhao	Breeding of near-isogenic line CBB30 and molecular mapping of Xa30(t), a new resistance gene to bacterial blight in rice.	Sci. Agric. Sin.	40	1094-1100	2007	XA30	Xa30(t)
31421		Singh, K., Y. Vikal, R. Mahajan, K.K. Cheema, D. Bhatia, R. Sharma, J.S. Lore and T.S. Bharaj	Three novel bacterial blight resistance genes identified, mapped and transfer to cultivated rice O. sativa L.	In: The 2nd International Conference on Bacterial Blight of Rice, Nanjing, China		82-84	2007	XA31,XA32	Xa31,Xa32
31422	16936841	Nakazaki T, Tsukiyama T, Okumoto Y, Kageyama D, Naito K, Inouye K, Tanisaka T.	Distribution, structure, organ-specific expression, and phylogenic analysis of the pathogenesis-related protein-3 chitinase gene family in rice (Oryza sativa L.).	Genome	49(6)	619-30	2006	CHT9,CHT6,CHT10,CHT11,CHT5,CHT8,CHIA1;175,RCH10	Cht9, OsCht9, Cht1, OsChi19A, Chi19A,Cht6,Cht10,Cht11, PR3, OsCHT11,Cht5, OsChia4a, OsChitIVa, Chia4a, ChitIVa, CHIT3, OsCHIT3,Cht8, OsChia2a, Cht2, Rcht2, Chia2a, CHIT14, OsCHIT14, OsPR3,OsChia1;175, PC, Cht7, OsChia1d, Chia1d ,RCH10*, Cht13, Cht12, Rcht2
31423	17273822	Mori M, Tomita C, Sugimoto K, Hasegawa M, Hayashi N, Dubouzet JG, Ochiai H, Sekimoto H, Hirochika H, Kikuchi S.	Isolation and molecular characterization of a Spotted leaf 18 mutant by modified activation-tagging in rice.	Plant Mol. Biol.	63(6)	847-60	2007	SPL50,SPL18	OsSPL50,Spl18, OsAT1, AT1
31424	17507777	Takagi K, Ishikawa N, Maekawa M, Tsugane K, Iida S.	Transposon display for active DNA transposons in rice.	Genes Genet. Syst.	82(2)	109-22	2007	ADART,NDART1	aDart,nDart, nDART1, nDART
31425	17619151	Woo YM, Park HJ, Su'udi M, Yang JI, Park JJ, Back K, Park YM, An G	Constitutively wilted 1, a member of the rice YUCCA gene family, is required for maintaining water homeostasis and an appropriate root to shoot ratio.	Plant Mol. Biol.	65(1-2)	125-36	2007	COW1	OsCOW1, oscow1, OsYUC8, YUC8, NAL7, OsNAL7, OsYUCCA8, YUCCA8, FMO, OsFMO(t), REIN7, YUC8/REIN7
31426	17721709	Xue Y, Jiang L, Su N, Wang JK, Deng P, Ma JF, Zhai HQ, Wan JM.	The genetic basic and fine-mapping of a stable quantitative-trait loci for aluminium tolerance in rice.	Planta.	227(1)	255-62	2007	ALT9	Alt-9,qPRE-9
31427	18357468	Wu C, Bordeos A, Madamba MR, Baraoidan M, Ramos M, Wang GL, Leach JE, Leung H.	Rice lesion mimic mutants with enhanced resistance to diseases.	Mol. Genet. Genomics	279(6)	605-19	2008	SPL25,SPL26,SPL27,SPL20,SPL17,SPL21,SPL23,SPL19,SPL22,SPL24	spl25,Spl26,Spl27,spl20,spl17,spl21,spl23,spl19,spl22,Spl24
31428	18596034	Koszelak-Rosenblum M, Krol AC, Simmons DM, Goulah CC, Wroblewski L, Malkowski MG.	His-311 and Arg-559 are key residues involved in fatty acid oxygenation in pathogen-inducible oxygenase.	J. Biol. Chem.	283(36)	24962-71	2008	COX-1,COX-2	COX-1,COX-2
31429	18663450	Ueda S, Horino T, Arii K, Morita T, Takao T, Hashimoto K.	Magnetic resonance imaging of palindromic rheumatism.	Rheumatol Int.	29(1)	87-9	2008	CHT11	Cht11, PR3, OsCHT11
31430	15905328	Guimil S, Chang HS, Zhu T, Sesma A, Osbourn A, Roux C, Ioannidis V, Oakeley EJ, Docquier M, Descombes P, Briggs SP, Paszkowski U.	Comparative transcriptomics of rice reveals an ancient pattern of response to microbial colonization.	Proc. Natl. Acad. Sci. U.S.A.	102(22)	8066-70	2005	AM14,AM24,AM26,AM29,AM39,AM20,AM42,AM31,AM10,AM15,AM11,AM1,AM2,AM3,GRAS16,AM25,BAD1,AM34	OsAM14, OsARK1, ARK1,AM24,AM26,AM29,  OsRING405, RING405,AM39,AM20,AM42,AM31,AM10,OsAM15,AM11,OsAM1, prx53, OsPRX53,OsAM2, OsPI8-1a, PI8-1a,OsAM3, OsLysMe2, LysMe2,AM18, OsAM1, OsGRAS-16, OsGRAS16, GRAS-16, PsiOsGRAS4, , PsiGRAS4  ,AM25, OsNIP1;4, NIP1-4, OsNIP1.4, NIP1.4,Badh1, badh1, BAD1, BADH1, OsBADH1, BADH, OsALDH10A5, ALDH10A5 ,AM34
31431	17129318	Bradbury LM, Fitzgerald TL, Henry RJ, Jin Q, Waters DL.	The gene for fragrance in rice.	Plant Biotechnol J.	3(3)	363-70	2005	SK2(T)(SCL, FGR),BAD1	sk2(t)(scl, fgr), fgr, scl, BAD2, BADH2, sk2, OsBADH2, Badh2, badh2, Os2AP, BADH-2, OsALDH10A8, ALDH10A8 ,Badh1, badh1, BAD1, BADH1, OsBADH1, BADH, OsALDH10A5, ALDH10A5 
31432	18340459	Yang J, Yunying C, Zhang H, Liu L, Zhang J.	Involvement of polyamines in the post-anthesis development of inferior and superior spikelets in rice.	Planta.	228(1)	137-49	2008	SAMDC	SamDC, AdoMetDC, AdoMetDC1, OsSAMDC1
31433	18509653	Roychoudhury A, Basu S, Sarkar SN, Sengupta DN.	Comparative physiological and molecular responses of a common aromatic indica rice cultivar to high salinity with non-aromatic indica rice cultivars	Plant Cell Rep.	27(8)	1395-410.	2008	SAMDC	SamDC, AdoMetDC, AdoMetDC1, OsSAMDC1
31434	18704694	Bradbury LM, Gillies SA, Brushett DJ, Waters DL, Henry RJ.	Inactivation of an aminoaldehyde dehydrogenase is responsible for fragrance in rice.	Plant Mol. Biol.	68(4-5)	439-49.	2008	SK2(T)(SCL, FGR),BAD1	sk2(t)(scl, fgr), fgr, scl, BAD2, BADH2, sk2, OsBADH2, Badh2, badh2, Os2AP, BADH-2, OsALDH10A8, ALDH10A8 ,Badh1, badh1, BAD1, BADH1, OsBADH1, BADH, OsALDH10A5, ALDH10A5 
31436	18852152	Banba M, Gutjahr C, Miyao A, Hirochika H, Paszkowski U, Kouchi H, Imaizumi-Anraku H.	Divergence of evolutionary ways among common sym genes: CASTOR and CCaMK show functional conservation between two symbiosis systems and constitute the root of a common signaling pathway.	Plant Cell Physiol.	49(11)	1659-71.	2008	POLLUX,CASTOR,DMI3	OsPOLLUX, Os-POLLUX, DMI1, OsDMI1,Os-CASTOR,OsDMI3, OsCCaMK1, OsCCaMK, OsCCAMK, CCAMK
31437	18978069	Chen C, Fan C, Gao M, Zhu H.	Antiquity and function of CASTOR and POLLUX, the twin ion channel-encoding genes key to the evolution of root symbioses in plants.	Plant Physiol.	149(1)	306-17.	2009	POLLUX,CASTOR	OsPOLLUX, Os-POLLUX, DMI1, OsDMI1,Os-CASTOR
31438	19033192	Long Y, Zhao L, Niu B, Su J, Wu H, Chen Y, Zhang Q, Guo J, Zhuang C, Mei M, Xia J, Wang L, Wu H, Liu YG.	Hybrid male sterility in rice controlled by interaction between divergent alleles of two adjacent genes.	Proc. Natl. Acad. Sci. U.S.A.	105(48)	18871-6.	2008	SA,SAF,SAM	Sa*, S-a, Hst16,SaF, OsFbox019, OsFbox19, Os_F0070,  OsFBD1, FBD1,SaM 
31439	19033527	Gutjahr C, Banba M, Croset V, An K, Miyao A, An G, Hirochika H, Imaizumi-Anraku H, Paszkowski U.	Arbuscular mycorrhiza-specific signaling in rice transcends the common symbiosis signaling pathway.	Plant Cell	20(11)	2989-3005.	2008	PT11,AM2,AM14,AM1,AM15,AM26,POLLUX,AM29,DMI3,AM31,AM39,AM42,CASTOR,NUP85,NUP133,AM34,AM25,AM20,AM24,BAD1,SYMRK,GRAS16,AM11,AM3,AM10	OsPT11, PHT1-11, OsPht1;11, ORYsa;PHT1;11,OsAM2, OsPI8-1a, PI8-1a,OsAM14, OsARK1, ARK1,OsAM1, prx53, OsPRX53,OsAM15,AM26,OsPOLLUX, Os-POLLUX, DMI1, OsDMI1,AM29,  OsRING405, RING405,OsDMI3, OsCCaMK1, OsCCaMK, OsCCAMK, CCAMK,AM31,AM39,AM42,Os-CASTOR,NUP85,NUP133,AM34,AM25, OsNIP1;4, NIP1-4, OsNIP1.4, NIP1.4,AM20,AM24,Badh1, badh1, BAD1, BADH1, OsBADH1, BADH, OsALDH10A5, ALDH10A5 ,OsSYMRK,AM18, OsAM1, OsGRAS-16, OsGRAS16, GRAS-16, PsiOsGRAS4, , PsiGRAS4  ,AM11,OsAM3, OsLysMe2, LysMe2,AM10
31441	17893721	Luo Z, Yang Z, Zhong B, Li Y, Xie R, Zhao F, Ling Y, He G.	Genetic analysis and fine mapping of a dynamic rolled leaf gene, RL10(t), in rice (Oryza sativa L.).	Genome	50(9)	811-7.	2007	RL10	rl10
31442	19011003	Manosalva PM, Davidson RM, Liu B, Zhu X, Hulbert SH, Leung H, Leach JE.	A germin-like protein gene family functions as a complex quantitative trait locus conferring broad-spectrum disease resistance in rice.	Plant Physiol.	149(1)	286-96.	2009	GLP12-2,GER2,GLP12-4,GLP12-1,GLP12-3,GER1,GLP8-10,GLP8-6,GLP8-5,GLP8-8,GLP8-9,GLP8-11,GLP8-12,GER3,GER6,GLP8-1	OsGLP12-2, OsCDP12.2, CDP12.2,OsGLP8-3, GLP8-3, OsGER2, OsCDP8.3, CDP8.3,OsGLP12-4, OsCDP12.4, CDP12.4,OsGLP12-1, OsCDP12.1, CDP12.1,OsGLP12-3, OsCDP12.3, CDP12.3,OsGLP8-4, GLP8-4, OsGER1, OsGer1, OsCDP8.4, CDP8.4,OsGLP8-10, OsRGLP2, RGLP2, OsCDP8.10, CDP8.10,OsGLP8-6, OsCDP8.6, CDP8.6,OsGLP8-5, OsCDP8.5, CDP8.5,OsGLP8-8, OsCDP8.8, CDP8.8,OsGLP8-9, OsCDP8.9, CDP8.9,OsGLP8-11, RGLP1, OsRGLP1, OsCDP8.11, CDP8.11,OsGLP8-12, OsCDP8.12, CDP8.12,OsGLP8-2, GLP8-2, OsGER3, GLP16, OsEnS-117, OsCDP8.2, CDP8.2,OsGLP8-7, GLP8-7, OsGER6, OsRGLP2, RGLP2, OsCDP8.7, CDP8.7,OsGLP8-1, OsCDP8.1, CDP8.1
31443	19104064	Dai S, Wei X, Alfonso AA, Pei L, Duque UG, Zhang Z, Babb GM, Beachy RN.	Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease.	Proc. Natl. Acad. Sci. U.S.A.	105(52)	21012-6.	2008	RF2B,RF2A	RF2b, OsbZIP30,RF2a, OsbZIP75
31444		Yan Changjie , Yan Song , Zhang Zhengqiu, Liang Guohua , Lu Jufei and Gu Minghong 	Genetic analysis and gene fine mapping for a rice novel mutant (rl9(t)) with rolling leaf character.	Chin. Sci. Bull.	51	63-69	2006	RL9,RL7,RL8	rl9, SLL1/RL9, SLL1, OsSLL1, OsADD1, ADD1, KANADI1, AH2, OsAH2, CL1, OsCL1,rl7,rl8
31445		L. Bazrkar, A. J. Ali , N. A. Babaeian, A. A. Ebadi, M. Allahgholipour, K. Kazemitabar and G. Nematzadeh	Tagging of four fertility restorer loci for wild abortive?cytoplasmic male sterility system in rice ( Oryza sativa L.) using microsatellite markers.	Euphytica	164	669-677	2008	RF7	RF7
31446	17086445	Fujii S, Komatsu S, Toriyama K.	Retrograde regulation of nuclear gene expression in CW-CMS of rice.	Plant Mol. Biol.	63(3)	405-17.	2007	AOX1A,[CMS-CW],RMS,AOX1B,AOX1C	Ao1-1, AOX1a, OsAOX1a, AOX 1a,[cms-CW],RFcw, RFCW, RfcwARf17,AOX1b, OsAOX1b,OsAOX1c
31447	18301900	He X, Miyasaka SC, Fitch MM, Moore PH, Zhu YJ.	Agrobacterium tumefaciens-mediated transformation of taro (Colocasia esculenta (L.) Schott) with a rice chitinase gene for improved tolerance to a fungal pathogen Sclerotium rolfsii.	Plant Cell Rep.	27(5)	903-9.	2008	CHT11	Cht11, PR3, OsCHT11
31450	17333504	Nozoye T, Inoue H, Takahashi M, Ishimaru Y, Nakanishi H, Mori S, Nishizawa NK.	The expression of iron homeostasis-related genes during rice germination.	Plant Mol. Biol.	64(1-2)	35-47.	2007	DMAS1,NAAT1	OsDMAS1, OsAKR5, AKR5,OsNAAT1
31451	17406793	Lee SK, Hwang SK, Han M, Eom JS, Kang HG, Han Y, Choi SB, Cho MH, Bhoo SH, An G, Hahn TR, Okita TW, Jeon JS.	Identification of the ADP-glucose pyrophosphorylase isoforms essential for starch synthesis in the leaf and seed endosperm of rice (Oryza sativa L.).	Plant Mol. Biol.	65(4)	531-46.	2007	AGPL3,AGPL4,AGPS1,AGPS2,AGPL2,AGPL1	OsAGPL3, APL3, OsAPL3, AGPlar, OsAGPL1, AGPL1,OsAGPL4, APL4, OsAPL4, OsSTA193,OsAGPS1, APS1, OsAPS1, AGPsma,OsAGPS2a, AGPS2A, AGPS2B, OsAGPS2, osagps2, APS2, APS2a, APS2b, AGPS2a, APGS2b, OsAGPS2b, AGPP, GAS8, OsAPS2, OsAPS2a, OsAPS2b,OsAGPL2, osagpl2, APL2, OsAPL2, AGPiso, sh2, Sh2, GIF2, GAS1 ,OsAGPL1, OsAPL1, APL1, OsAGPL3, AGPL3, OsAGPSL3, AGPSL3
31452	17468002	Narayanan NN, Vasconcelos MW, Grusak MA.	Expression profiling of Oryza sativa metal homeostasis genes in different rice cultivars using a cDNA macroarray.	Plant Physiol. Biochem.	45(5)	277-86.	2007	ZIP5,YSL7,FRO2,ZIP6,NAAT,ZIP3,YSL19,ZIP1,YSL5,LCD1,YSL12,IRT1,YSL17,NRAMP7,YSL8,ZIP7,YSL13,YSL18,YSL6,YSL16,NRAMP2,FER1,FRO1,FDH,NRAMP6,NRAMP1,NAS2,PDR9,NRAMP4,FER2,YSL2,NAS1,ZIP2	OsZIP5, OsZIP8, ZIP8, OsZIP9,OsYSL7, OsYs4,OsFRO2, OsFRO1,OsZIP6,OsNAAT,OsZIP3,OsYSL19,OsZIP1,OsYSL5, OsYs9 ,NRAMP5, OsNRAMP5, OsNramp5, OsLCD1,OsYSL12, OsYs11 ,OsIRT1, ZIP10, OsZIP10, OsZIP12, ZIP12,OsYSL17, OsYs18 ,OsNRAMP7,OsYSL8, OsYs3 ,OsZIP7,OsYSL13, OsYs12 ,OsYSL18, OsYs2 ,OsYSL6, OsYs8 ,OsYSL16, Os-YSL16, OsYs14 ,OsNramp2, OsNRAMP2,OsFER1, OsFer1 ,OsFRO1,OsFDH, FDH 1, FDH1, OsFDH1,OsNRAMP6, Nramp6, l-NRAMP6, s-NRAMP6, OsNramp6.8, OsNramp1,OsNramp1, OsNRAMP1, OsNramp6,OsNAS2, OsNAS1,OsPDR9, ospdr9, OsPDR3, PDR3, OsABCG36/OsPDR9, OsABCG36,OsNRAMP4, Nrat1, Nramp6, OsNRAT1, NRAT1, FCO5,OsFER2, OsFer2,OsYSL2, Os-YSL2, OsYs6 ,OsNAS1,OsZIP2, OsZIP11, ZIP11 
31453	18160413	Yang JH, Seo HH, Han SJ, Yoon EK, Yang MS, Lee WS.	Phytohormone abscisic acid control RNA-dependent RNA polymerase 6 gene expression and post-transcriptional gene silencing in rice cells.	Nucleic Acids Res.	36(4)	1220-6.	2007	SHL2,RDR3	shl2, SHL2, sh2, OsRDR6, RDR6,OsRDR3, OsRDR3a
31454	18217708	Hirose S, Kawahigashi H, Tagiri A, Ohkawa Y.	Herbicide-induced anthocyanin accumulation in transgenic rice by expression of rice OSB2 under the control of rice CYP72A21 promoter.	J. Agric. Food Chem.	56(4)	1259-63.	2008	ANS	ANS, OsANS1, ANS1, LDOX, LDOX1, OsLDOX, OsLDOX1
31455	18224446	Suzuki M, Tsukamoto T, Inoue H, Watanabe S, Matsuhashi S, Takahashi M, Nakanishi H, Mori S, Nishizawa NK.	Deoxymugineic acid increases Zn translocation in Zn-deficient rice plants.	Plant Mol. Biol.	66(6)	609-17.	2008	NAAT1,DMAS1	OsNAAT1,OsDMAS1, OsAKR5, AKR5
31456	18700826	Quilis J, Penas G, Messeguer J, Brugidou C, San Segundo B.	 The Arabidopsis AtNPR1 inversely modulates defense responses against fungal, bacterial, or viral pathogens while conferring hypersensitivity to abiotic stresses in transgenic rice.	Mol. Plant Microbe Interact.	21(9)	1215-31.	2008	PR10A,RDR1	PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsRDR1
31457	18726614	Shih CH, Chu H, Tang LK, Sakamoto W, Maekawa M, Chu IK, Wang M, Lo C.	 Functional characterization of key structural genes in rice flavonoid biosynthesis.	Planta.	228(6)	1043-54.	2008	CHS,F3'H,ANS,RD,F3H1,CHI3,PS,B2	CHS*, Oschs, chs, chas, OsCHS, OsCHS1, CHS1, OsPKS26, PKS26, OsCHS24, CHS24, OsCHS27, CHS27,OsF3'H, OsCYP75B3, CYP75B3, OsF3'H10, F3'H10, OsCYP71P3, CYP71P3,ANS, OsANS1, ANS1, LDOX, LDOX1, OsLDOX, OsLDOX1,Rd, DFR, OsDFR, OS-DFR, OsDFR1, DFR1, DFR-1,OsF3H-1, F3H-1, OsF3H1, OsF3H, F3H, OsF3H3, F3H3,gh1, GH1, OsGH1, OsCHI, Cfi, CHI, OsCHI3,Ra*, bhlh13, OsbHLH013, OsbHLH13, Ra, OSB1, Ra1, OsGL3A, GL3A, OsB2, OsMYC7, MYC7, OsPs, Ps, OsHLH1, HLH1,OsbHLH016, Kala4, OsKala4, OSB2, OsB2
31458	18761634	Chen C, Ane JM, Zhu H.	OsIPD3, an ortholog of the Medicago truncatula DMI3 interacting protein IPD3, is required for mycorrhizal symbiosis in rice.	New Phytol.	80(2)	311-5.	2008	IPD3	OsIPD3, Osipd3, CYCLOPS, IPD3/CYCLOPS, OsCYCLOPS
31459	18826656	Kapoor M, Arora R, Lama T, Nijhawan A, Khurana JP, Tyagi AK, Kapoor S.	Genome-wide identification, organization and phylogenetic analysis of Dicer-like, Argonaute and RNA-dependent RNA Polymerase gene families and their expression analysis during reproductive development and stress in rice.	BMC Genomics.	9	451	2008	RDR1,DCL1A,AGO1B,DCL1B,AGO3,DCL1C,DCL2B,RDR4,AGO16,AGO11,AGO12,AGO15,AGO13,DCL3B,AGO17,DCL3A,RDR3,DCL2A,RDR2,AGO1C,AGO18,AGO1D,AGO4A,AGO4B,AGO1A,AGO14,AGO2,SHL4	OsRDR1,OsDCL1a,OsAGO1b, AGO1b, AGO1-2 ,OsDCL1b,OsAGO3,OsDCL1c,OsDCL2b,OsRDR4, OsRDR3b,OsAGO16, OsAGO6, ZP1,OsAGO11,OsAGO12,OsAGO15,OsAGO13,OsDCL3b,OsAGO17,OsDCL3a,OsRDR3, OsRDR3a,OsDCL2a, OsDCL2, DCL2,OsRDR2,OsAGO1c, OsAGO1, AGO1, AGO1c,OsAGO18,OsAGO1d, AGO1d,OsAGO4a, AGO4-2,OsAGO4b, AGO4-1 ,OsAGO1a, AGO1a, AGO10, AGO1-1 ,OsAGO14,OsAGO2,shl4, sh4, OsAGO7, SHO2, AGO7, SHL4/SHO2
31460	18830621	Moons A.	Transcriptional profiling of the PDR gene family in rice roots in response to plant growth regulators, redox perturbations and weak organic acid stresses.	Planta.	229(1)	53-71.	2008	PDR20,PDR8,PDR9,PDR6	OsPDR20,OsPDR8, PDR4, P0410E03.16, OsABCG37, OsPDR4,OsPDR9, ospdr9, OsPDR3, PDR3, OsABCG36/OsPDR9, OsABCG36,OsPDR6, OsABCG31, OsABCG31_1
31461	19017626	Kuramata M, Masuya S, Takahashi Y, Kitagawa E, Inoue C, Ishikawa S, Youssefian S, Kusano T.	 Novel cysteine-rich peptides from Digitaria ciliaris and Oryza sativa enhance tolerance to cadmium by limiting its cellular accumulation.	Plant Cell Physiol.	50(1)	106-17.	2009	CDT4,CDT2,CDT5,CDT3,CDT1	OsCDT4,OsCDT2,OsCDT5,OsCDT3,OsCDT1, OsCCX2, CCX2, OsNCX8, NCX8
31462	19049971	Inoue H, Kobayashi T, Nozoye T, Takahashi M, Kakei Y, Suzuki K, Nakazono M, Nakanishi H, Mori S, Nishizawa NK.	Rice OsYSL15 is an iron-regulated iron(III)-deoxymugineic acid transporter expressed in the roots and is essential for iron uptake in early growth of the seedlings.	J. Biol. Chem.	284(6)	3470-9.	2009	YSL15	OsYSL15, OsYs7
31463	19052152	Shin JH, Kim SR, An G.	Rice aldehyde dehydrogenase7 is needed for seed maturation and viability.	Plant Physiol.	149(2)	905-15.	2009	ALDH7	OsALDH7, osaldh7, LDH, ALDH7B7, OsALDH7B6, ALDH7B6, OsAnt1, Ant1
31464	19099599	Wan L, Li D, Zhang D, Liu X, Fu WJ, Zhu L, Deng M, Sun F, Qian M.	Conservation and implications of eukaryote transcriptional regulatory regions across multiple species.	BMC Genomics.	9	623	2008	ALYL1	OsALYL1
31466	16263903	Ishimaru Y, Suzuki M, Kobayashi T, Takahashi M, Nakanishi H, Mori S, Nishizawa NK.	OsZIP4, a novel zinc-regulated zinc transporter in rice.	J. Exp. Bot.	56(422)	3207-14.	2005	ZIP6,ZIP3,ZIP7,ZIP1,ZIP4,ZIP5	OsZIP6,OsZIP3,OsZIP7,OsZIP1,OsZIP4,OsZIP5, OsZIP8, ZIP8, OsZIP9
31467	17630290	Ishimaru Y, Masuda H, Suzuki M, Bashir K, Takahashi M, Nakanishi H, Mori S, Nishizawa NK.	Overexpression of the OsZIP4 zinc transporter confers disarrangement of zinc distribution in rice plants.	J. Exp. Bot.	58(11)	2909-15.	2007	ZIP4	OsZIP4
31468	18038191	Yang X, Huang J, Jiang Y, Zhang HS.	Cloning and functional identification of two members of the ZIP (Zrt, Irt-like protein) gene family in rice (Oryza sativa L.).	Mol. Biol. Rep.	36(2)	281-7.	2009	ZIP7,ZIP5	OsZIP7,OsZIP5, OsZIP8, ZIP8, OsZIP9
31469	18071708	Jain M, Tyagi AK, Khurana JP.	Constitutive expression of a meiotic recombination protein gene homolog, OsTOP6A1, from rice confers abiotic stress tolerance in transgenic Arabidopsis plants.	Plant Cell Rep.	27(4)	767-78.	2008	TOP6A1,TOP6B,TOP6A2,TOP6A3	OsTOP6A1, OsSPO11-1, OsSPO11A, SPO11-1,OsTOP6B, OsSPO11-6B,OsTOP6A2, OsSpo11-2, OsSPO11-2, OsSPO11B, SPO11-2,OsTOP6A3, OsSPO11-3, OsSPO11C
31470	18707797	Li GW, Peng YH, Yu X, Zhang MH, Cai WM, Sun WN, Su WA.	Transport functions and expression analysis of vacuolar membrane aquaporins in response to various stresses in rice.	J. Plant Physiol.	165(18)	1879-88.	2008	TIP1;2,TIP3;1,TIP5;1,TIP3;2,TIP4;2,TIP2;1,TIP4;3,TIP4;1,TIP2;2,TIP1;1	OsTIP1;2, TIP1-2, TIP1.2, TIP1,OsTIP3;1, TIP3-1, TIP3.1, TIP3, OsEnS-139,OsTIP5;1,OsTIP3;2, TIP3-2, OsEnS-70,OsTIP4;2, TIP4.2, TIP4-2,OsTIP2;1, TIP2-1, TIP2,OsTIP4;3, TIP4.3, TIP4-3,OsTIP4;1, TIP4-1,OsTIP2;2, TIP2-2,OsTIP1;1, TIP1-1, rTIP1
31471	19458265	Fujii S, Toriyama K.	Suppressed expression of RETROGRADE-REGULATED MALE STERILITY restores pollen fertility in cytoplasmic male sterile rice plants.	Proc. Natl. Acad. Sci. U.S.A.	106(23)	9513-18	2009	RMS	RFcw, RFCW, RfcwARf17
31472	18940787	Ashikawa,I., Hayashi,N., Yamane,H., Kanamori,H., Wu,J., Matsumoto,T., Ono,K. and Yano,M.	Two adjacent nucleotide-binding site-leucine-rich repeat class genes are required to confer Pikm-specific rice blast resistance	Genetics	180(4)	2267-2276	2008	PIK,PIKM	Pik, RMg8, Pi-k, Pik-2, Pik-1, Pik1, Pik2, Pik-H4, Pikp-1, Pikh-1, Pik1-H4, Pikh-2, Pik2-H4,Pik-m, Pi-m, Pi-km, Pikm, Pi m, Pikm1-TS, Pikm2-TS, Pi-km1, Pi-km2
31473	19298266	Hagiwara,W.E., Uwatoko,N., Sasaki,A., Matsubara,K., Nagano,H., Onishi,K. and Sano,Y.	Diversification in flowering time due to tandem FT-like gene duplication, generating novel Mendelian factors in wild and cultivated rice	Mol. Ecol.	18(7)	1537-49	2009	HD3A,RFT1	Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,FT-L 3, OsFTL3, FTL3, FT-L3, RFT, OsRFT1
31475	19244140	Huang,C.F., Yamaji,N., Mitani,N., Yano,M., Nagamura,Y. and Ma,J.F.	A Bacterial-Type ABC Transporter Is Involved in Aluminum Tolerance in Rice	Plant Cell	21(2)	655-667	2009	STAR2,STAR1	OsSTAR2, OsSATR2,OsENA2, OsABCI12, ENA2, ABCI12, OsSTAR1, OsSATR1
31476	19071208	Huang,J., Zhang,K., Shen,Y., Huang,Z., Li,M., Tang,D., Gu,M. and Cheng,Z.	Identification of a high frequency transposon induced by tissue culture, nDaiZ, a member of the hAT family in rice	Genomics	93(3)	274-281	2009	GH2,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_	gh2, CAD2, CAD, OsCAD2, OsGH2 ,nDaiZ9,nDaiZ1,nDaiZ2,nDaiZ3,nDaiZ4,nDaiZ5,nDaiZ6,nDaiZ7,nDaiZ8,nDaiZ10,nDaiZ11,nDaiZ12,nDaiZ13,nDaiZ14,nDaiZ15,nDaiZ16,DaiZ1,DaiZ4,DaiZ6,DaiZ7,DaiZ10
31477	19305410	Huang,X., Qian,Q., Liu,Z., Sun,H., He,S., Luo,D., Xia,G., Chu,C., Li,J. and Fu,X.	Natural variation at the DEP1 locus enhances grain yield in rice	Nat Genet	41(4)	494-497	2009	DEP1	OsDEP1, EP, qPE9-1, DN1, DEP1/DN1/qPE9-1, qNGR9, qDEP1, RGG4/DEP1/DN1/qPE9-1/OsGGC3, RGG4, OsDN1, OsGGC3, GGC3
31478	19228340	Kawakatsu,T., Taramino,G., Itoh,J., Allen,J., Sato,Y., Hong,S.-K., Yule,R., Nagasawa,N., Kojima,M., Kusaba,M., Sakakibara,H., Sakai,H. and Nagato,Y.	PLASTOCHRON3/GOLIATH encodes a glutamate carboxypeptidase required for proper development in rice	Plant J.	58i6j	1028-1040	2009	GO,PLA2,PLA1	go, go1, pla3, PLA3, PLA3/GO, OsLBD3-7, LBD3-7,pla2, pla2(pla2-1, pla2-2), plt2, LHD2, OsLHD2,pla1, OsPLA1, plt1, CYP78A11
31479	19181864	Lai,K.W., Yau,C.P., Tse,Y.C., Jiang,L. and Yip,W.K.	Heterologous expression analyses of rice OsCAS in Arabidopsis and in yeast provide evidence for its roles in cyanide detoxification rather than in cysteine synthesis in vivo	J. Exp. Bot.	60(3)	993-1008	2009	CAS	OsCAS, OAS-TL
31480	19164767	Lu,F., Ammiraju,J.S., Sanyal,A., Zhang,S., Song,R., Chen,J., Li,G., Sui,Y., Song,X., Cheng,Z., de Oliveira,A.C., Bennetzen,J.L., Jackson,S.A., Wing,R.A. and Chen,M.	Comparative sequence analysis of MONOCULM1-orthologous regions in 14 Oryza genomes	Proc. Natl. Acad. Sci. U.S.A.	106(6)	2071-2076	2009	MOC1	moc1, OsMOC1, OsGRAS-33, OsGRAS33, GRAS-33, GRAS33, GNP6, OsGNP6
31481	0	Ren,Y. and Zhao,J.	Functional analysis of the rice metallothionein gene OsMT2b promoter in transgenic Arabidopsis plants and rice germinated embryos	Plant Sci.	176(4)	528-538	2009	MT2B	OsMT2b, MT2b, OsMT-I-2c, MT-I-2c, MT2C, MT2BL, OsMT2C, OsMT2BL, MTE, OsMT2b1, OsMT2b2, MT2b1, MT2b2, MTb, met1, OsMTe, OsMT-I-2c, OsB22EL8, MTe, MT-I-2c, B22EL8
31482	0	Udomchalothorn,T., Maneeprasobsuk,S., Bangyeekhun,E., Boon-Long,P. and Chadchawan,S.	The role of the bifunctional enzyme, fructose-6-phosphate-2-kinase/fructose-2,6- bisphosphatase, in carbon partitioning during salt stress and salt tolerance in Rice (Oryza sativa L.)	Plant Sci.	176(3)	334-341	2009	F2KP1,F2KP2	OsF2KP1,OsF2KP2
31485	14645724	Rabbani MA, Maruyama K, Abe H, Khan MA, Katsura K, Ito Y, Yoshiwara K, Seki M, Shinozaki K, Yamaguchi-Shinozaki K.	Monitoring expression profiles of rice genes under cold, drought, and high-salinity stresses and abscisic acid application using cDNA microarray and RNA gel-blot analyses.	Plant Physiol.	133(4)	1755-67	2003	RBLS2,LIP19	ASR1, OsAsr1, OsASR3, ASR3, Asr3, OsRBLS2,Lip19, lip19, OsLIP9, OsbZIP38, bZIP38
31486	18435825	Kazama T, Nakamura T, Watanabe M, Sugita M, Toriyama K.	Suppression mechanism of mitochondrial ORF79 accumulation by Rf1 protein in BT-type cytoplasmic male sterile rice.	Plant J.	55(4):	619-28	2008	ATP6	atp6, OsPOX1, prx3, POX1
31487	2151651	Yamaguchi-Shinozaki K, Mundy J, Chua NH.	Four tightly linked rab genes are differentially expressed in rice.	Plant Mol. Biol.	14(1)	29-39	1990	RAB16C,RAB16D,RAB16B,RAB16A	rab21, OsLEA27, rab16C, OsRAB16C, DHD,rab21, OsLEA26, Rab16D, OsRab16,rab21, OsLEA28, OsRAB16D, OsRab16d, Rab16d, OsRAB16b, XERO1, OsXERO1, OsRD22, RD22,Rab16A, rab21, RAB21, OsRab21, OsRAB21, OsRAB-21, OsRab16A, OsLEA29, rab16A, OsRAB16A
31488		Yoshiyuki Yamagata, Kazuyuki Doi, Hideshi Yasui and Atsushi Yoshimura	Identification of Mutants for Abnormal Pollen Development in Rice	Breeding Science	.57(4)	 331-337	2007	GPS4,GPS5,GPS7,GPS6,GPS8,GPS9,SPS1,SPS10,SPS11,SPS2,SPS12,SPS3,SPS4,SPS5,SPS6,GPS11,GPS2,SPS8,SPS9,SPS7,GPS1,GPS12,GPS3,GPS10	gps4,gps5,gps7,gps6,gps8,gps9,sps1,sps10,sps11,sps2,sps12,sps3,sps4,sps5,sps6,gps11,gps2,sps8,sps9,sps7,gps1,gps12,gps3,gps10
31489		Y. Yamagata, K. Doi, H. Yasui and A. Yoshimur	Linkage analysis of SPS6, SPS9 and SPS12, the sporophytic rice genes acting in pollen development.	RGN	24	14	2008	SPS6,SPS12,SPS9	sps6,sps12,sps9
31490	16668800	Bostock RM, Quatrano RS.	Regulation of Em Gene Expression in Rice : Interaction between Osmotic Stress and Abscisic Acid.	Plant Physiol.	98(4)	1356-1363	1992	EM	Em*, EMP1, Emp1, EM, Em, OsEm, Osem, OsLEA21, OsEm1, Em1 
31491	8819309	Sun JL, Nakagawa H, Karita S, Ohmiya K, Hattori T.	Rice embryo globulins: amino-terminal amino acid sequences, cDNA cloning and expression.	Plant Cell Physiol.	37(5)	612-20.	1996	REG1,REG2	,REG-2
31492	16152656	Komatsu S, Abbasi F, Kobori E, Fujisawa Y, Kato H, Iwasaki Y.	Proteomic analysis of rice embryo: an approach for investigating Galpha protein-regulated proteins.	Proteomics	5(15)	3932-41	2005	REG2	REG-2
31493	2137613	Mundy J, Yamaguchi-Shinozaki K, Chua NH.	Nuclear proteins bind conserved elements in the abscisic acid-responsive promoter of a rice rab gene.	Proc. Natl. Acad. Sci. U.S.A.	87(4)	1406-10	1990	RAB16B,RAB16C,RAB16D,RAB16A	rab21, OsLEA28, OsRAB16D, OsRab16d, Rab16d, OsRAB16b, XERO1, OsXERO1, OsRD22, RD22,rab21, OsLEA27, rab16C, OsRAB16C, DHD,rab21, OsLEA26, Rab16D, OsRab16,Rab16A, rab21, RAB21, OsRab21, OsRAB21, OsRAB-21, OsRab16A, OsLEA29, rab16A, OsRAB16A
31495	10767423	Tsuji H, Nakazono M, Saisho D, Tsutsumi N, Hirai A.	Transcript levels of the nuclear-encoded respiratory genes in rice decrease by oxygen deprivation: evidence for involvement of calcium in expression of the alternative oxidase 1a gene.	FEBS Lett.	471(2-3)	201-4.	2000	AOX1A	Ao1-1, AOX1a, OsAOX1a, AOX 1a
31496	12036102	Saika H, Ohtsu K, Hamanaka S, Nakazono M, Tsutsumi N, Hirai A.	AOX1c, a novel rice gene for alternative oxidase; comparison with rice AOX1a and AOX1b.	Genes Genet. Syst.	77(1)	31-8.	2002	AOX1A,AOX1B,AOX1C	Ao1-1, AOX1a, OsAOX1a, AOX 1a,AOX1b, OsAOX1b,OsAOX1c
31497	11971906	Masiero S, Imbriano C, Ravasio F, Favaro R, Pelucchi N, Gorla MS, Mantovani R, Colombo L, Kater MM.	Ternary complex formation between MADS-box transcription factors and the histone fold protein NF-YB.	J. Biol. Chem.	277(29)	26429-35.	2002	HAP3K	OsHAP3K/OsNF-YB1, OsHAP3K, OsNF-YB1, NF-YB1, nf-yb1, OsLEC1, OsNF-YB-1, NFYB1, OsEnS-41
31500	19249065	Gogami,Y., Ito,K., Kamitani,Y., Matsushima,Y. and Oikawa,T.	Occurrence of D-serine in rice and characterization of rice serine racemase	Phytochemistry	70(3)	380-387	2009	_	SerR
31501	19215594	He,C., Lin,Z., McElroy,D. and Wu,R.	Identification of a rice actin2 gene regulatory region for high-level expression of transgenes in monocots	Plant Biotechnol J.	7(3)	227-239	2009	ACT2	OsACT2, Act2
31502	19207212	Horigome,A., Nagasawa,N., Ikeda,K., Ito,M., Itoh,J.I. and Nagato,Y.	Rice OPEN BEAK is a negative regulator of class 1 knox genes and a positive regulator of class B floral homeotic gene	Plant J.	58	724-36	2009	SL1	sl1(t), sl1, stl1, opb, OPB1, ps, PS, OPB, DLN2, OsDLN2, OsJAG, JAG, OsJAG.1, OsJAG.2, ZOS1-02, OsZOS1-02
31504	18943978	Jia,Y., Wang,Z., Fjellstrom,R.G., Moldenhauer,K.A., Azam,M.A., Correll,J., Lee,F.N., Xia,Y. and Rutger,J.N.	Rice Pi-ta gene Confers Resistance to the Major Pathotypes of the Rice Blast Fungus in the United States	Phytopathology	94(3)	296-301	2004	PITA	Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30, Trx30
31505	19153255	Lee,S.K., Song,M.Y., Seo,Y.S., Kim,H.K., Ko,S., Cao,P.J., Suh,J.P., Yi,G., Roh,J.H., Lee,S., An,G., Hahn,T.R., Wang,G.L., Ronald,P. and Jeon,J.S.	Rice Pi5-Mediated Resistance to Magnaporthe oryzae Requires the Presence of Two Coiled-Coil-Nucleotide-Binding-Leucine-Rich Repeat Genes	Genetics	181(4)	1627-1638	2009	PI5-2,PI37,PI3	Pi3, Pi5, Pi-3(t), Pi-3, Pi3(t), Pi5(t), Pi5-2, Pii,  RMg22, RMg21,Pi37(t), Pi37,Pi3, Pi5, Pi-3(t), Pi-3, Pi3(t), Pi5(t), Pi5-1, Pii,  RMg22, RMg21
31506	19167778	Sahu,B.B. and Shaw,B.P.	Salt-inducible isoform of plasma membrane H+ATPase gene in rice remains constitutively expressed in natural halophyte, Suaeda maritima	J. Plant Physiol.	166(10)	1077-1089	2009	AHA3	OSA3, OsA3, osAHA3, AHA3, PAM3
31508	19000005	Wang,X., Jia,Y., Shu,Q.Y. and Wu,D.	Haplotype diversity at the Pi-ta locus in cultivated rice and its wild relatives	Phytopathology	98(12)	1305-1311	2008	PITA	Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30, Trx30
31509	19240804	Xiao,W., Liu,H., Li,Y., Li,X., Xu,C., Long,M. and Wang,S.	A rice gene of de novo origin negatively regulates pathogen-induced defense response	PLoS One	4 (2)	E4603	2009	PAL1,DR10,AOS2,WRKY13,CHT1,PAD4,PR1A,ICS1,CHS	OsPAL, Pal1*, Pal1, PAL, Pal_1, PalI, PAL2, OsPAL01, PAL01, OSPAL, CP-1, GP-1, OsPAL1, PAL3, OsPAL3,OsDR10,OsAOS2, CYP74A2, OsAOS, OsAOS1,OsWRKY13,Cht1*(Chi1), Ch16, Cht1, CHT-1, CH16, RC24, OsChia1a, OsChia1, Chi1, Cht1*, Chi-1, Cht-1, Cht1, RCC1, OsCht-1, PR3, OsPR3,OsPAD4,OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1, OsPR1b, PR1alpha, OsPR1alpha,OsICS1, OsICS, ICS,CHS*, Oschs, chs, chas, OsCHS, OsCHS1, CHS1, OsPKS26, PKS26, OsCHS24, CHS24, OsCHS27, CHS27
31510	19297585	Yoo,S.C., Cho,S.H., Sugimoto,H., Li,J., Kusumi,K., Koh,H.J., Iba,K. and Paek,N.C.	Rice Virescent3 and Stripe1 Encoding the Large and Small Subunits of Ribonucleotide Reductase Are Required for Chloroplast Biogenesis during Early Leaf Development	Plant Physiol.	150(1)	388-401	2009	RNRL2,RNRS2,ST1,V3	,,st1(ws1), ws1, st1, OsST1, RNRS1, OsRNRS1, rnrs1, RNRS, SDL/RNRS1, SDL, OsSDL, NSL2, OsNSL2,v3, RNRL1, rnrl1, RNR1, RNRL, Osv3, OsRNRL1, OsRNR1, OsRNRL
31511	19290563	Zhang,Y., Wang,J., Zhang,X., Chen,J.Q., Tian,D. and Yang,S.	Genetic signature of rice domestication shown by a variety of genes	J. Mol. Evol.	68(4)	393-402	2009	_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,PIB,SH4	,,,,,,,,PIC22,,Vatp, OsSTA154,,,,,,,,,Pi b(Pi s), Pis, Pib, Pi-s, Pi-hy,sh4, SH4, SHAT2, SHA1, qSH4, QSH4, OsSh4, Sh4, Osh4, OsMSL23, MSL23
31512	19484258	Kim EH,Suh SC,Park BS,Shin KS,Kweon SJ,Han EJ,Park SH,Kim YS,Kim JK	Chloroplast-targeted expression of synthetic cry1Ac in transgenic rice as an alternative strategy for increased pest protection.	Planta.	230	397-405	2009		
31513	19482918	Jabnoune M,Espeout S,Mieulet D,Fizames C,Verdeil JL,Conejero G,Rodriguez-Navarro A,Sentenac H,Guiderdoni E,Abdelly C,Very AA	Diversity in expression patterns and functional properties in the rice HKT transporter family.	Plant Physiol.	150	1955-71	2009	HKT6,HKT4,HKT1	OsHKT6, OsHKT1;3, HKT1;3, OsHKT1;3_FL, OsHKT1;3_V1, OsHKT1;3_V2, OsHKT1;3_V3, OsHKT1;3_V4, OsHKT1;3_V5,OsHKT4, OsHKT1;1, HKT1;1, OsHKT2, RNC4, OsHKT1;1-FL, OsHKT1;1-V1, OsHKT1;1-V2, OsHKT1;1-V3, OsHKT1;1-V4, OsHKT1;1-V5, OsHKT1;1-V6, OsHKT1;1-V7, OsHKT1;1-V8,OsHKT1, OsHKT2;1, HKT2;1, Ni (Nipponbare)-OsHKT1, Po (Pokkali)-HKT1, OsHKT1;1, HKT1;1
31514	19480680	Kim SH,Bhat PR,Cui X,Walia H,Xu J,Wanamaker S,Ismail AM,Wilson C,Close TJ	Detection and validation of single feature polymorphisms using RNA expression data from a rice genome array.	BMC Plant Biol	9	65	2009	SKC1	OsHKT8, HKT8, Os-HKT1;5, OsHKT1;5, HKT1;5, SKC1, qSKC-1(t), OsSKC1
31515	19476655	Wang H,Chai Y,Chu X,Zhao Y,Wu Y,Zhao J,Ngezahayo F,Xu C,Liu B	Molecular characterization of a rice mutator-phenotype derived from an incompatible cross-pollination reveals transgenerational mobilization of multiple transposable elements and extensive epigenetic instability.	BMC Plant Biol	9	63	2009		
31516	19474214	Huang S,Taylor NL,Whelan J,Millar AH	Refining the definition of plant mitochondrial presequences through analysis of sorting signals, N-terminal modifications, and cleavage motifs.	Plant Physiol.	150	1272-85	2009		
31517	19473328	Kawakatsu T,Yamamoto MP,Touno SM,Yasuda H,Takaiwa F	Compensation and interaction between RISBZ1 and RPBF during grain filling in rice.	Plant J.	59	908-20	2009	RISBZ1,RPBF	OsbZIP58, bZIP58, OsEnS-92, OsSMF1, SMF1, OsRISBZ1, RISBZ1/bZIP58,OsDof3, OsDOF3, OsEnS-34, OsDof10, Dof10, OsDof-10, OsDOF1, DOF1, DOF3, OsRPBF, OsDOF7
31518	19472976	Kim ST,Wang Y,Kang SY,Kim SG,Rakwal R,Kim YC,Kang KY	Developing rice embryo proteomics reveals essential role for embryonic proteins in regulation of seed germination.	J Proteome Res.	8	3598-605	2009		
31519	19470656	Clark SM,Di Leo R,Van Cauwenberghe OR,Mullen RT,Shelp BJ	Subcellular localization and expression of multiple tomato gamma-aminobutyrate transaminases that utilize both pyruvate and glyoxylate.	J. Exp. Bot.	60	3255-67	2009		
31520	19470589	Lin H,Wang R,Qian Q,Yan M,Meng X,Fu Z,Yan C,Jiang B,Su Z,Li J,Wang Y	DWARF27, an iron-containing protein required for the biosynthesis of strigolactones, regulates rice tiller bud outgrowth.	Plant Cell	21	1512-25	2009	D27	d27(d t), dt, dwf23, d27, OsD27
31521	19468840	Aoyama T,Kobayashi T,Takahashi M,Nagasaka S,Usuda K,Kakei Y,Ishimaru Y,Nakanishi H,Mori S,Nishizawa NK	OsYSL18 is a rice iron(III)-deoxymugineic acid transporter specifically expressed in reproductive organs and phloem of lamina joints.	Plant Mol. Biol.	70	681-92	2009	YSL11,YSL10,YSL14,YSL7,YSL5,YSL12,YSL4,YSL17,YSL8,YSL3,YSL13,YSL16,YSL9,YSL6,YSL1,YSL2,YSL15,YSL18	OsYSL11,OsYSL10,OsYSL14, OsYs5,OsYSL7, OsYs4,OsYSL5, OsYs9 ,OsYSL12, OsYs11 ,OsYSL4, OsYs17 ,OsYSL17, OsYs18 ,OsYSL8, OsYs3 ,OsYSL3, OsYs16 ,OsYSL13, OsYs12 ,OsYSL16, Os-YSL16, OsYs14 ,OsYSL9, OsYs13 ,OsYSL6, OsYs8 ,OsYSL1, OsYs1,OsYSL2, Os-YSL2, OsYs6 ,OsYSL15, OsYs7,OsYSL18, OsYs2 
31522	19468748	Peng H,Zhang Q,Li Y,Lei C,Zhai Y,Sun X,Sun D,Sun Y,Lu T	A putative leucine-rich repeat receptor kinase, OsBRR1, is involved in rice blast resistance.	Planta.	230	377-85	2009	BRR1	OsBRR1
31523	19466605	Koo SC,Choi MS,Chun HJ,Shin DB,Park BS,Kim YH,Park HM,Seo HS,Song JT,Kang KY,Yun DJ,Chung WS,Cho MJ,Kim MC	The calmodulin-binding transcription factor OsCBT suppresses defense responses to pathogens in rice.	Mol. Cells	27	563-70	2009		
31524	19465440	Kuwano M,Takaiwa F,Yoshida KT	Differential effects of a transgene to confer low phytic acid in caryopses located at different positions in rice panicles.	Plant Cell Physiol.	50	1387-92	2009		
31525	19457861	Guy JE,Stahl U,Lindqvist Y	Crystal structure of a class XIB phospholipase A2 (PLA2): rice (oryza sativa) isoform-2 pla2 and an octanoate complex.	J. Biol. Chem.	284	19371-9	2009		
31526	19454733	Aya K,Ueguchi-Tanaka M,Kondo M,Hamada K,Yano K,Nishimura M,Matsuoka M	Gibberellin modulates anther development in rice via the transcriptional regulation of GAMYB.	Plant Cell	21	1453-72	2009	GID2,GAMYB,GID1,KAR,CYP703A3	gid2, GF14e, OsGF14e, OsGID2, 14-3-3e,OsGAMYB, GAM1, OsGAMyb, Os-MYBGA, Os GAMYB, OsMYBGA, MYBGA, Os2R_MYB15, 2R_MYB15 ,gid1, OsGID1, Thl, Os GID1,,OsCYP703A3
31527	19453459	Kim SR,Yang JI,Moon S,Ryu CH,An K,Kim KM,Yim J,An G	Rice OGR1 encodes a pentatricopeptide repeat-DYW protein and is essential for RNA editing in mitochondria.	Plant J.	59	738-49	2009	OGR1	ogr1
31528	19453457	Chung PJ,Kim YS,Jeong JS,Park SH,Nahm BH,Kim JK	The histone deacetylase OsHDAC1 epigenetically regulates the OsNAC6 gene that controls seedling root growth in rice.	Plant J.	59	764-76	2009	HDAC1,NAC6	OsHDAC1, HDA702, OsHDA702, HDA1, OsHDA1, HDT702, OsHDT702,OsNAC6, ONAC048, NAC48, SNAC2, SNAC2/OsNAC6, OsNAC6/ONAC048, OsSNAC2, SNAC-2, OsSNAC-2, OsNAC2
31529	19453447	Morita R,Sato Y,Masuda Y,Nishimura M,Kusaba M	Defect in non-yellow coloring 3, an alpha/beta hydrolase-fold family protein, causes a stay-green phenotype during leaf senescence in rice.	Plant J.	59	940-952	2009	NOL,NHL3,NYC1,NYC3,NHL1,NHL2	nol, NOL1, OsNOL, OsNOL1,,nyc1, OsNYC1,nyc3, OsNYC3, PPH,,
31530	19453444	Xiao H,Tang J,Li Y,Wang W,Li X,Jin L,Xie R,Luo H,Zhao X,Meng Z,He G,Zhu L	STAMENLESS 1, encoding a single C2H2 zinc finger protein, regulates floral organ  identity in rice.	Plant J.	59	789-801	2009	SL1	sl1(t), sl1, stl1, opb, OPB1, ps, PS, OPB, DLN2, OsDLN2, OsJAG, JAG, OsJAG.1, OsJAG.2, ZOS1-02, OsZOS1-02
31531	19449811	Sookwong P,Murata K,Nakagawa K,Shibata A,Kimura T,Yamaguchi M,Kojima Y,Miyazawa T	Cross-fertilization for enhancing tocotrienol biosynthesis in rice plants and QTL analysis of their F2 progenies.	J. Agric. Food Chem.	57	4620-5	2009		
31532	19448729	Lee D,Lupotto E,Powell W	G-string slippage turns white rice red.	Genome	52	490-3	2009		
31533	19447378	Ma L,Yang C,Zeng D,Cai J,Li X,Ji Z,Xia Y,Qian Q,Bao J	Mapping QTLs for heading synchrony in a doubled haploid population of rice in two environments.	J Genet Genomics	36	297-304	2009		
31534	19439571	Kang K,Kim YS,Park S,Back K	Senescence-induced serotonin biosynthesis and its role in delaying senescence in  rice leaves.	Plant Physiol.	150	1380-93	2009	TDC1,TDC2	OsTDC, TDC, TDC2, OsTDC1, OsTDC4,OsTDC2, OsTDC3
31535	19434509	Akama K,Kanetou J,Shimosaki S,Kawakami K,Tsuchikura S,Takaiwa F	Seed-specific expression of truncated OsGAD2 produces GABA-enriched rice grains that influence a decrease in blood pressure in spontaneously hypertensive rats.	Transgenic Res	18(6)	865-76	2009		
31536	19430792	Qiu X,Xie W,Lian X,Zhang Q	Molecular analyses of the rice glutamate dehydrogenase gene family and their response to nitrogen and phosphorous deprivation.	Plant Cell Rep.	28	1115-26	2009		
31537	19429605	Oh SJ,Kim YS,Kwon CW,Park HK,Jeong JS,Kim JK	Overexpression of the transcription factor AP37 in rice improves grain yield under drought conditions.	Plant Physiol.	150	1368-1379	2009	ERF3,ERF91	AP37, OsAP37, OsERF3, OsERF#075, OsERF075, OsERF75, ERF75, AP2/EREBP#004, AP2/EREBP4, OsBIERF2, BIERF2, DLN23, OsDLN23,OsERF#091, OsERF091, OsERF91, AP59, OsAP59, AP2/EREBP#147, AP2/EREBP147, OsBIERF3, BIERF3
31538	19423186	Hong CY,Chao YY,Yang MY,Cho SC,Huei Kao C	Na(+) but not Cl(-) or osmotic stress is involved in NaCl-induced expression of Glutathione reductase in roots of rice seedlings.	J. Plant Physiol.	166(15)	1598-1606	2009		
31539	19420799	Oki K,Inaba N,Kitano H,Takahashi S,Fujisawa Y,Kato H,Iwasaki Y	Study of novel d1 alleles, defective mutants of the alpha subunit of heterotrimeric G-protein in rice.	Genes Genet. Syst.	84	35-42	2009		
31540	19417056	Wuriyanghan H,Zhang B,Cao WH,Ma B,Lei G,Liu YF,Wei W,Wu HJ,Chen LJ,Chen HW,Cao YR,He SJ,Zhang WK,Wang XJ,Chen SY,Zhang JS	The ethylene receptor ETR2 delays floral transition and affects starch accumulation in rice.	Plant Cell	21	1473-94	2009	ETR3,ETR2,ETR4	OsETR3, OsERS4, OS-ETR3, OsETR3a, OsETR3b, PK2, OsPK2, OsETR2;1, ETR2;1,etr2, OsPK1, PK1, ERL1, OsETR2, OsERL1, OS-ETR2, OsERS3,PK3, OsPK3, OsETR4, OS-ETR4
31541	19415325	Guo X,Wu Y,Wang Y,Chen Y,Chu C	OsMSRA4.1 and OsMSRB1.1, two rice plastidial methionine sulfoxide reductases, are involved in abiotic stress responses.	Planta.	230	227-38	2009	MSRA4,MSRB1	OsMSRA4, OsMSRA4.1, MSRA4.1,OsMSRB1, OsMSRB1.1, OsMSRB1.2, MSRB1.1
31542	19415284	Wu R,Guo WL,Wang XR,Wang XL,Zhuang TT,Clarke JL,Liu B	Unintended consequence of plant transformation: biolistic transformation caused transpositional activation of an endogenous retrotransposon Tos17 in rice ssp. japonica cv. Matsumae.	Plant Cell Rep.	28	1043-51	2009		
31543	19411659	Brazier-Hicks M,Evans KM,Gershater MC,Puschmann H,Steel PG,Edwards R	The C-glycosylation of flavonoids in cereals.	J. Biol. Chem.	284	17926-34	2009	_	OsCGT, CGT
31544	19410335	Fujino K,Matsuda Y,Sekiguchi H	Transcriptional activity of rice autonomous transposable element Dart.	J. Plant Physiol.	166	1537-43	2009	DART01,DART02,DART28,_	Dart01,Dart02,Dart28,
31545	19410334	Magneschi L,Kudahettige RL,Alpi A,Perata P	Expansin gene expression and anoxic coleoptile elongation in rice cultivars.	J. Plant Physiol.	166	1576-80	2009	EXPA7,EXPA2,EXPA1,EXPA4	OsEXPA7, EXP7, OsEXP7, OsaEXPa1.26,OsEXP2, OsEXP2(Os-EXP2), Os-EXP2, EXPA2, OsEXPA2, OsaEXPa1.23, RiExB, RiExC, Os-EXPA2,OsEXP1, EXPA1, OsEXPA1, OsaEXPa1.16, RiExA,OsEXP4 (Os-EXP4), OsEXPA4, OsEXP4, Os-EXP4, OsaEXPa1.22
31546	19409457	Chen J,Ouyang Y,Wang L,Xie W,Zhang Q	Aspartic proteases gene family in rice: Gene structure and expression, predicted  protein features and phylogenetic relation.	Gene	442	108-18	2009		
31547	19407986	Wang J,Nakazaki T,Chen S,Chen W,Saito H,Tsukiyama T,Okumoto Y,Xu Z,Tanisaka T	Identification and characterization of the erect-pose panicle gene EP conferring  high grain yield in rice (Oryza sativa L.).	Theor. Appl. Genet.	119	85-91	2009	DEP1	OsDEP1, EP, qPE9-1, DN1, DEP1/DN1/qPE9-1, qNGR9, qDEP1, RGG4/DEP1/DN1/qPE9-1/OsGGC3, RGG4, OsDN1, OsGGC3, GGC3
31548	19407983	Saito H,Yuan Q,Okumoto Y,Doi K,Yoshimura A,Inoue H,Teraishi M,Tsukiyama T,Tanisaka T	Multiple alleles at Early flowering 1 locus making variation in the basic vegetative growth period in rice (Oryza sativa L.).	Theor. Appl. Genet.	119	315-23	2009	EF1	Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 
31549	19401410	Tang T,Xie H,Wang Y,Lu B,Liang J	The effect of sucrose and abscisic acid interaction on sucrose synthase and its relationship to grain filling of rice (Oryza sativa L.).	J. Exp. Bot.	60	2641-52	2009		
31550	19401269	Teerawanichpan P,Krittanai P,Chauvatcharin N,Narangajavana J	Purification and characterization of rice DNA methyltransferase.	Plant Physiol. Biochem.	47	671-80	2009	MET1A,MET1B	OsMET1a, OsMET1-1, MET1a, MET1-1, OsMET1, OsDMT702, DMT702,OsMET1b, OsMET1-2, MET1b, MET1
31551	19396402	Tsugama D,Liu S,Takano T	Stage- and tissue-specific expression of rice OsIsu1 gene encoding a scaffold protein for mitochondrial iron-sulfur-cluster biogenesis.	Biotechnol. Lett.	31	1305-10	2009		
31552	19395386	Senadheera P,Singh RK,Maathuis FJ	Differentially expressed membrane transporters in rice roots may contribute to cultivar dependent salt tolerance.	J. Exp. Bot.	60	2553-63	2009		
31553	19393612	Chen Q,Zhang B,Hicks LM,Wang S,Jez JM	A liquid chromatography-tandem mass spectrometry-based assay for indole-3-acetic  acid-amido synthetase.	Anal Biochem	390	149-54	2009		
31554	19392701	Yuan W,Li X,Chang Y,Wen R,Chen G,Zhang Q,Wu C	Mutation of the rice gene PAIR3 results in lack of bivalent formation in meiosis.	Plant J.	59	303-15	2009	PAIR3	
31555	19390838	Zhao J,Fu J,Li X,Xu C,Wang S	Dissection of the factors affecting development-controlled and race-specific disease resistance conferred by leucine-rich repeat receptor kinase-type R genes  in rice.	Theor. Appl. Genet.	119	231-9	2009		
31556	19390828	Koo SC,Choi MS,Chun HJ,Park HC,Kang CH,Shim SI,Chung JI,Cheong YH,Lee SY,Yun DJ,Chung WS,Cho MJ,Kim MC	Identification and characterization of alternative promoters of the rice MAP kinase gene OsBWMK1.	Mol. Cells	27	467-73	2009	BWMK1	OsBWMK1, MPK12, MAPK1, OsMAPK1, OsMPK12, OsMPK17-1, MPK17-1, OsBWMK1L, OsBWMK1M, OsBWMK1S, OsMAPK17-1, MAPK17-1, MAPK12, OsMAPK12
31557	19390827	Kwon SJ,Park KC,Son JH,Bureau T,Park CH,Kim NS	Sequence diversity of a domesticated transposase gene, MUG1, in Oryza species.	Mol. Cells	27	459-65	2009		
31558	19390826	Kim SJ,Lee SC,Hong SK,An K,An G,Kim SR	Ectopic expression of a cold-responsive OsAsr1 cDNA gives enhanced cold tolerance in transgenic rice plants.	Mol. Cells	27	449-58	2009		
31559	19386809	Ikeda-Kawakatsu K,Yasuno N,Oikawa T,Iida S,Nagato Y,Maekawa M,Kyozuka J	Expression level of ABERRANT PANICLE ORGANIZATION1 determines rice inflorescence  form through control of cell proliferation in the meristem.	Plant Physiol.	150	736-47	2009	APO1,NDART1-0	apo1(t), apo1, SCM2, SCM2/APO1, OsFbox321, Os_F0393, Pbl6/APO1, Pbl6, OsPbl6,  OsFBX202, FBX202,nDART1-0
31560	19381642	Hu X,Zhang H,Li G,Yang Y,Zheng Z,Song F	Ectopic expression of a rice protein phosphatase 2C gene OsBIPP2C2 in tobacco improves disease resistance.	Plant Cell Rep.	28	985-95	2009	ERF64,PP2C34,ERF91	OsERF#064, OsERF064, OsERF64, AP2/EREBP#029, AP2/EREBP29, OsBIERF4, BIERF4,OsPP2C34, OsPP55, OsBIPP2C2, OsBIPP2C2a, OsBIPP2C2b, OsBIPP2C2c,OsERF#091, OsERF091, OsERF91, AP59, OsAP59, AP2/EREBP#147, AP2/EREBP147, OsBIERF3, BIERF3
31561	19380351	Sawada T,Francisco PB Jr,Aihara S,Utsumi Y,Yoshida M,Oyama Y,Tsuzuki M,Satoh H,Nakamura Y	Chlorella starch branching enzyme II (BEII) can complement the function of BEIIb  in rice endosperm.	Plant Cell Physiol.	50	1062-74	2009		
31562	19376836	Lee S,Chiecko JC,Kim SA,Walker EL,Lee Y,Guerinot ML,An G	Disruption of OsYSL15 leads to iron inefficiency in rice plants.	Plant Physiol.	150	786-800	2009	YSL15	OsYSL15, OsYs7
31563	19373444	Morita R,Kusaba M,Iida S,Nishio T,Nishimura M	Development of PCR markers to detect the glb1 and Lgc1 mutations for the production of low easy-to-digest protein rice varieties.	Theor. Appl. Genet.	119	125-30	2009		
31564	19372371	Wei G,Tao Y,Liu G,Chen C,Luo R,Xia H,Gan Q,Zeng H,Lu Z,Han Y,Li X,Song G,Zhai H,Peng Y,Li D,Xu H,Wei X,Cao M,Deng H,Xin Y,Fu X,Yuan L,Yu J,Zhu Z,Zhu L	A transcriptomic analysis of superhybrid rice LYP9 and its parents.	Proc. Natl. Acad. Sci. U.S.A.	106	7695-701	2009		
31565	19370321	Xu XH,Zhao HJ,Liu QL,Frank T,Engel KH,An G,Shu QY	Mutations of the multi-drug resistance-associated protein ABC transporter gene 5  result in reduction of phytic acid in rice seeds.	Theor. Appl. Genet.	119	75-83	2009	MRP13	OsABCC13, OsMRP13, OsMRP5
31566	19370320	Xie W,Chen Y,Zhou G,Wang L,Zhang C,Zhang J,Xiao J,Zhu T,Zhang Q	Single feature polymorphisms between two rice cultivars detected using a median polish method.	Theor. Appl. Genet.	119	151-64	2009		
31567	19369275	Kojima M,Kamada-Nobusada T,Komatsu H,Takei K,Kuroha T,Mizutani M,Ashikari M,Ueguchi-Tanaka M,Matsuoka M,Suzuki K,Sakakibara H	Highly sensitive and high-throughput analysis of plant hormones using MS-probe modification and liquid chromatography-tandem mass spectrometry: an application for hormone profiling in Oryza sativa.	Plant Cell Physiol.	50	1201-14	2009		
31568	19369274	Darwish E,Testerink C,Khalil M,El-Shihy O,Munnik T	Phospholipid signaling responses in salt-stressed rice leaves.	Plant Cell Physiol.	50	986-97	2009		
31569	19363683	Ding X,Hou X,Xie K,Xiong L	Genome-wide identification of BURP domain-containing genes in rice reveals a gene family with diverse structures and responses to abiotic stresses.	Planta.	230	149-63	2009	_,_,_,_,_,BURP5,BURP7,_,_,_,_,_,_,RA8,_,BURP16,RAFTIN1	OsBURP01, OsBURP1,OsBURP02, OsBURP2,OsBURP04, OsBURP4,OsBURP06, OsBURP6,RD22, OsBURP03, OsBURP3,OsBURP05, OsBURP5,OsBURP07, OsBURP7,OsBURP08, OsBURP8,OsBURP09, OsBURP9,OsBURP10,OsBURP11,OsBURP12,OsBURP14,OsBURP15, BURP15,OsBURP17,OsRD22, RD22, OsBURP16,OsRAFTIN1, BURP13, OsBURP13, Os RAFTIN1
31570	19363620	Krishnamurthy P,Ranathunge K,Franke R,Prakash HS,Schreiber L,Mathew MK	The role of root apoplastic transport barriers in salt tolerance of rice (Oryza sativa L.).	Planta.	230	119-34	2009		
31571	19357984	Rai M,He C,Wu R	Comparative functional analysis of three abiotic stress-inducible promoters in transgenic rice.	Transgenic Res	18	787-99	2009		
31572	19357089	Mosquera G,Giraldo MC,Khang CH,Coughlan S,Valent B	Interaction transcriptome analysis identifies Magnaporthe oryzae BAS1-4 as Biotrophy-associated secreted proteins in rice blast disease.	Plant Cell	21	1273-90	2009		
31573	19353748	Wang C,Zhang Q,Shou HX	Identification and expression analysis of OsHsfs in rice.	J Zhejiang Univ Sci B	10	291-300	2009	HSFA2D,SPL7,HSFB2C,HSFB1,HSFC2A,HSFA2B,HSFC2B,HSFA2E,HSFA2C,HSFA4A,HSFA5,HSFA6,HSFB2A,HSFB4B,HSFB4C,HSFB4D,HSFC1A,HSFA1,HSFA9,HSFB4A,HSFC1B,HSFA2A,HSFB2B,HSFA7,HSFA3	HSfA2d, OsHsfA2d, OsHsf-08, rHsf7, HSF08, OsHSF8, HSF8, HSF7, OsHSF7, OsHSFA2dI, OsHSFA2dII, OsHSFA2dIII, OsHsfA6b, HsfA6b, OsHsf2d, Hsf2d,spl7, HSFA4D, HSF10, HSF15, OsHSF15, SP17, OsHsf-15, rHsf10, OsHsfA4d, HSfA4d, lrd13, HSF1,HSfB2c, OsHsfB2c, OsHsf-24, HSF24, OsHSF24 ,HSfB1, OsHsfB1, OsHsf-23, HSF23, OsHsf23, OsHSF23, TBF1 ,HSfC2a, OsHsfC2a, OsHsf-05, HSF05, OsHSF5, HSF5,HSfA2b, OsHsfA2b, OsHsf-18, rHsf5, HS1, HSF18, OsHSF18, HSF5, OsHSF5,HSfC2b, OsHsfC2b, OsHsf-16, HSF16, OsHSF16,HSfA2e, OsHsfA2e, OsHsf-12, OsHSF12, HSF12, OsHsfA2a, HsfA2a,HSfA2c, OsHsfA2c, OsHsf-25, rHsf6, OsHSF6, HSF25, OsHSF25, HSF6, OsHsfA6a, HsfA6a ,OsHsfA4a, OsHsf-04, HSFA4B, HSF04, OsHSF4, HSF4, HSF9, OsHsfA4b, OsHSF9,HSfA5, OsHsfA5, OsHsf-06, HSF06, OsHSF6, HSF6,HSfA6, OsHsfA6, OsHsf-17, HSF17, OsHSF17, HSFA6A, OsHsfA2f, HsfA2f, OsHsfA7b, HsfA7b,HSfB2a, OsHsfB2a, OsHsf-14, rHsf1, HSF1, HSF14, OsHSF14,HSFB4b, OsHSFB4b, OsHsf-19, OsHSF19, rHsf12, OsHSF12, HSF12, HSF19,HSfB4c, OsHsfB4c, OsHsf-22, HSF22, OsHSF22,OsHsfB4d, HSfB4d, OsHsf-10, HSF10, OsHSF10,HSfC1a, OsHsfC1a, OsHsf-02, OsHSF2, HSF2, rHsf13, HSF02, HSF13,OsHsfA1, HsfA1, OsHSF13, HSF13, OsHsf-13, HSF3, rHsf3, OsHsfA1a,HSfA9, OsHsfA9, OsHsf-09, rHsf8, HSF09, OsHSF9, HSF9, HSF8, OsHsfA8, HsfA8 ,HSfB4a, OsHsfB4a, OsHsf-20, HSF20, OsHSF20,OsHsfC1b, HsfC1b, HSF03, OsHsf-03, OsHSF3, HSF3, HSF11,  rHsf11,HSfA2a, OsHsfA2a, OsHsf-11, rHsf4, OsHSF11, HSF11, HSF4, RHSP2, OsHsfA2a-1, OsHsfA2a-2, OsHsfA2a-3, OsHsfA2a-4, OsHsfA2a-5, OsHsfA2a-6, OsHsfA2e, HsfA2e ,HSfB2b, OsHsfB2b, OsHsf-21, rHsf2, HSF2, HSF21, OsHSF21, OsHSF7,OsHsfA7, OsHsf-01, HSFA6B, HSF01, OsHSF1, HSF1, OsEnS-9, OsHsfA7a, HsfA7a ,HSfA3, OsHsfA3, OsHsf-07, HSF07, OsHSF7, HSF7, DLN57, OsDLN57
31574	19346465	Oikawa T,Kyozuka J	Two-Step Regulation of LAX PANICLE1 Protein Accumulation in Axillary Meristem Formation in Rice.	Plant Cell	21	1095-108	2009	LAX1	lax, lax(lx), lx, OsbHLH123, bHLH123, OsLAX1, BOS1, OsBOS1
31575	19339508	Huang CF,Yamaji N,Nishimura M,Tajima S,Ma JF	A rice mutant sensitive to Al toxicity is defective in the specification of root  outer cell layers.	Plant Cell Physiol.	50	976-85	2009		
31576	19339499	Hou X,Xie K,Yao J,Qi Z,Xiong L	A homolog of human ski-interacting protein in rice positively regulates cell viability and stress tolerance.	Proc. Natl. Acad. Sci. U.S.A.	106	6410-5	2009	_,_,SKIPB,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,SKIPA,_,SIP31,SIP25,SIP33,FLO6,SIP2,HOX33,CYP18-2,SIP13 ,SIP5,SIP14,_,_,_,XB15,_	OsSWAP70B, SWAP70B, SIP21,SIP1, EIP5,OsSKIPb,SIP9,SIP8,SIP10,SIP15,SIP16,SIP17,  OsBTBN25, BTBN25,SIP23,  OsRING169, RING169,SIP26,SIP27,SIP28,SIP29,SIP30,OsHUB1, HUB1, SIP20,  OsRING377, RING377,PAKRP1, OsKRP1, SIP18 ,SIP34,SIP7,SIP24 ,OsSKIPa, OsSKIP, SKIP,OsbHLH160, bHLH160, SIP19, OsSIP19,OsSIP31,OsSIP25, OsTMF, TMF,OsSIP33, RIP2, OsRIP2,  OsRING76, RING76,OsSIP4, SIP4, OsFLO6, OsSFq3, SFq3,OsSIP2, OsFIP, FIP, OsFIP37, FIP37,Oshox33, OsHox33, OSHB3, HB3, SIP22, OsSIP22, OsHDZ40, OsHDZIP40, HDZ40, HDZIP40,OsCYP18-2, OsCYP-23, OsCYP18-2a, OsCYP18-2b, OsCYP18-2c, SIP12 ,OsRFPHC-10, RFPHC-10, OsSIP13 ,  OsRING413, RING413,OsARID3, ARID3, OsSIP5 ,OsSIP14, RIP1, OsRIP1,  OsRING77, RING77,SIP32,SIP6 ,SPIN6, Spin6, SIP11 ,XB15, OsPP2C35, PP2C35, OsPP59, SIP35 ,SIP3
31577	19337737	Qiu D,Mao J,Yang X,Zeng H	Expression of an elicitor-encoding gene from Magnaporthe grisea enhances resistance against blast disease in transgenic rice.	Plant Cell Rep.	28	925-33	2009		
31578	19337211	Wang L,Yin H,Qian Q,Yang J,Huang C,Hu X,Luo D	NECK LEAF 1, a GATA type transcription factor, modulates organogenesis by regulating the expression of multiple regulatory genes during reproductive development in rice.	Cell Res	19	598-611	2009	PLA1,NL1	pla1, OsPLA1, plt1, CYP78A11,nl1, OsGATA15, GATA15, OsNL1
31580	19327164	Alinsug MV,Yu CW,Wu K	Phylogenetic analysis, subcellular localization, and expression patterns of RPD3/HDA1 family histone deacetylases in plants.	BMC Plant Biol	9	37	2009		
31581	19326953	Jiang L,Yang L,Zhang H,Guo J,Mazzara M,Van den Eede G,Zhang D	International collaborative study of the endogenous reference gene, sucrose phosphate synthase (SPS), used for qualitative and quantitative analysis of genetically modified rice.	J. Agric. Food Chem.	57	3525-32	2009		
31582	19326262	Han Y,Zhang W,Zhang B,Zhang S,Wang W,Ming F	One novel mitochondrial citrate synthase from Oryza sativa L. can enhance aluminum tolerance in transgenic tobacco.	Mol Biotechnol	42	299-305	2009	CS1	OsCS1
31583	19324458	Zhou J,Li F,Wang JL,Ma Y,Chong K,Xu YY	Basic helix-loop-helix transcription factor from wild rice (OrbHLH2) improves tolerance to salt- and osmotic stress in Arabidopsis.	J. Plant Physiol.	166	1296-306	2009		
31584	19322663	Islam MA,Du H,Ning J,Ye H,Xiong L	Characterization of Glossy1-homologous genes in rice involved in leaf wax accumulation and drought resistance.	Plant Mol. Biol.	70	443-56	2009	_,_,_,GL1-11,GL1-2,WSL2,_,WDA1,LTR1,_,GL1-6	OsGL1-9,OsGL1-10,OsGL1-8, GL1-8,OsGL1-11,OsGL1-2, WAX2, OsWAX2,OsGL1-1, WSL2,OsGL1-7, CER2, CER1, OsCER1, OsCER2,OsWDA1, Wda1, wda1, OS-CER1, OsGL1-5,OsCER1, CER1, OsGL1-4, GL1-4, Os CER1, OsLTR1,OsGL1-3,Os0053, OsGL1-6
31585	19318375	Yuan M,Chu Z,Li X,Xu C,Wang S	Pathogen-induced expressional loss of function is the key factor in race-specific bacterial resistance conferred by a recessive R gene xa13 in rice.	Plant Cell Physiol.	50	947-55	2009	XA13	xa13, Xa13, Os8N3, Os-8N3, 8N3, OsSWEET11, SWEET11, OsSWEET11/Xa13, Xa13/Os8N3/SWEET11, Os8N3/Xa13, OsSWEET11/Os8N3, OsSWEET11a, SWEET11a
31586	19306686	Hu LW,Cui da Y,Zang AP,Neill S,Cai WM	Auxin-regulated OsRGP1 and OsSuS are involved in gravitropic bending of rice shoot bases.	Fen Zi Xi Bao Sheng Wu Xue Bao	42	27-34	2009		
31587	19304997	Greenup A,Peacock WJ,Dennis ES,Trevaskis B	The molecular biology of seasonal flowering-responses in Arabidopsis and the cereals.	Ann Bot (Lond)	103	1165-72	2009		
31588	19304938	Zhang GH,Xu Q,Zhu XD,Qian Q,Xue HW	SHALLOT-LIKE1 is a KANADI transcription factor that modulates rice leaf rolling by regulating leaf abaxial cell development.	Plant Cell	21	719-35	2009	SAG12-2,4CL4,_,RL9,_	CP, OsSAG12-2,Os4CL4,OsLTPd8, OsLtpV.4, PI,rl9, SLL1/RL9, SLL1, OsSLL1, OsADD1, ADD1, KANADI1, AH2, OsAH2, CL1, OsCL1,OsPAL04, PAL04, PAL, OsPAL7, PAL7
31589	19302973	Li J,Xie Y,Dai A,Liu L,Li Z	Root and shoot traits responses to phosphorus deficiency and QTL analysis at seedling stage using introgression lines of rice.	J Genet Genomics	36	173-83	2009		
31590	19302972	Yang Z,Gao Q,Sun C,Li W,Gu S,Xu C	Molecular evolution and functional divergence of HAK potassium transporter gene family in rice (Oryza sativa L.).	J Genet Genomics	36	161-72	2009	HAK22,HAK19,HAK20,HAK11,HAK10,HAK13,HAK4,HAK16,HAK17,HAK6,HAK2,HAK3,HAK5,LCS,HAK18,HAK23,HAK24,HAK26,HAK8,HAK9,HAK12,HAK14,HAK15,HAK25,HAK27,HAK7,HAK21	OsHAK22,OsHAK19,OsHAK20,OsHAK11,OsHAK10,OsHAK13,OsHAK4,OsHAK16,OsHAK17, FCO3, FCO4,OsHAK6, OsSTA42,OsHAK2,OsHAK3,OsHAK5, FCO13, OsFCO13,OsHAK1, HAK1,OsHAK18,OsHAK23,OsHAK24,OsHAK26,OsHAK8,OsHAK9,OsHAK12,OsHAK14,OsHAK15,OsHAK25,OsHAK27,OsHAK7,OsHAK21
31591	19293370	Jung B,Florchinger M,Kunz HH,Traub M,Wartenberg R,Jeblick W,Neuhaus HE,Mohlmann T	Uridine-ribohydrolase is a key regulator in the uridine degradation pathway of Arabidopsis.	Plant Cell	21	876-91	2009		
31592	19288292	Zhang X,Li D,Zhang H,Wang X,Zheng Z,Song F	Molecular characterization of rice OsBIANK1, encoding a plasma membrane-anchored  ankyrin repeat protein, and its inducible expression in defense responses.	Mol. Biol. Rep.	37(2)	653-60	2010		
31593	19286937	Yamaguchi T,Kuroda M,Yamakawa H,Ashizawa T,Hirayae K,Kurimoto L,Shinya T,Shibuya N	Suppression of a phospholipase D gene, OsPLDbeta1, activates defense responses and increases disease resistance in rice.	Plant Physiol.	150	308-19	2009	PLDbeta1	OsPLDbeta1, OsC2DP79, C2DP79
31594	19285007	Park HY,Kang IS,Han JS,Lee CH,An G,Moon YH	OsDEG10 encoding a small RNA-binding protein is involved in abiotic stress signaling.	Biochem. Biophys. Res. Commun.	380	597-602	2009		
31595	19279197	Ma Q,Dai X,Xu Y,Guo J,Liu Y,Chen N,Xiao J,Zhang D,Xu Z,Zhang X,Chong K	Enhanced tolerance to chilling stress in OsMYB3R-2 transgenic rice is mediated by alteration in cell cycle and ectopic expression of stress genes.	Plant Physiol.	150	244-56	2009	KN,CYCB2;2,CDC20.1,MYB3R2,CAL1,CYCB1;1,CYCB2;1	OsKN, OsSYP111, SYP111,cycB2;2 (=cycOs2), cycB2;2, cycOs2, CycB2;2, CycOs2, CYCB2-2, CYCOS2, CycB2-Os2, CYCB2, CycB2;os;2, OsCycB2;2, Orysa;CycB2;2, OsCYCOS2, Os;cycB2;2, CYCB2.2, OsCYCB2.2,OsWD40-51, OsCDC20.1, WD40-51, CDC20.1, CDC20.2, OsCDC20.2,  OsCDC20-3, CDC20-3, OsCDC20A, CDC20A,OsMYB3R-2, OsMYB3R2, OsMSL07, MSL07, MSL7, DLN28, OsDLN28,OsCPT1, CPT1, DEFL7, OsDEFL7, OsDf-07, Df-07, OsPR12, PR12, DEF7, OsDEF7, OsAFP1, AFP1, OsPDF2.2, PDF2.2,CycB1;1, CycB1;os;1, Orysa;CycB1;1, OsCycB1;1, CyclaZm, CYCIaZm, OsCYCIaZm, OsCYCB1;4,cycB2;1 (=cycOs1), cycB2;1, cycOs1, CycB2;1, CycOs1, CYCB2-1, CYCOS1, CycB2-Os1, CYCB2, CycB2;os;1, Orysa;CycB2;1, CycB2;os;1, OsCycB2;1
31596	19277876	Ouyang Y,Chen J,Xie W,Wang L,Zhang Q	Comprehensive sequence and expression profile analysis of Hsp20 gene family in rice.	Plant Mol. Biol.	70	341-57	2009		
31597	19270400	Toyomasu T,Kagahara T,Hirose Y,Usui M,Abe S,Okada K,Koga J,Mitsuhashi W,Yamane H	Cloning and characterization of cDNAs encoding ent-copalyl diphosphate synthases  in wheat: insight into the evolution of rice phytoalexin biosynthetic genes.	Biosci. Biotechnol. Biochem.	73	772-5	2009		
31598	19267902	Barakat A,Bagniewska-Zadworna A,Choi A,Plakkat U,DiLoreto DS,Yellanki P,Carlson JE	The cinnamyl alcohol dehydrogenase gene family in Populus: phylogeny, organization, and expression.	BMC Plant Biol	9	26	2009		
31599	19266175	Liu T,Mao D,Zhang S,Xu C,Xing Y	Fine mapping SPP1, a QTL controlling the number of spikelets per panicle, to a BAC clone in rice (Oryza sativa).	Theor. Appl. Genet.	118	1509-17	2009		
31600	19266169	Song Y,You J,Xiong L	Characterization of OsIAA1 gene, a member of rice Aux/IAA family involved in auxin and brassinosteroid hormone responses and plant morphogenesis.	Plant Mol. Biol.	70	297-309	2009	ARF1,IAA9,IAA1	OsARF1, arf1, OsARF23, ARF23,OsIAA9, OsIAA2,OsIAA1, OsIAA4
31601	19264754	Xu H,Zhang J,Zeng J,Jiang L,Liu E,Peng C,He Z,Peng X	Inducible antisense suppression of glycolate oxidase reveals its strong regulation over photosynthesis in rice.	J. Exp. Bot.	60	1799-809	2009	GLO2,GLO3,GLO4,GLO5,GLO6,GLO1	GLO2, OsGLO2,GLO3, OsGLO3,GLO5, OsGLO5, OsGLO4, ,GLO4, OsGLO4, OsGLO5,GLO6, OsGLO6, OsGOX6, GOX6,GLO1, OsGLO1
31602	19263224	Ye S,Wang L,Xie W,Wan B,Li X,Lin Y	Expression profile of calcium-dependent protein kinase (CDPKs) genes during the whole lifespan and under phytohormone treatment conditions in rice (Oryza sativa  L. ssp. indica).	Plant Mol. Biol.	70	311-25	2009	CDPK1,CDPK6,CDPK15,CDPK29,CDPK8,CDPK19,CDPK16,CDPK26,CDPK22,CDPK10,CDPK17,CDPK24,CDPK21,CDPK25,CDPK13,CDPK11,CDPK30,CDPK28,CDPK2,CDPK27,CDPK3,CDPK20,CDPK7,CDPK9,CDPK31,CDPK5,CDPK14,CDPK18,SPK,CDPK4,ESL4	OsCDPK1, OsCPK1, CPK1,OsCDPK6, OsCPK6, CPK6,OsCDPK15, OsCPK15,OsCDPK29, OsCPK29,OsCDPK8, OsCPK8,OsCDPK19, OsCPK19, OsCDPK2, CPK2, CDPK2,OsCDPK16, OsCPK16, CPK16,OsCDPK26, OsCPK26, CPK26,OsCDPK22, OsCPK22, CPK22,OsCDPK10, OsCPK10, CPK10,OsCDPK17, OsCPK17, CPK17, OsCPK17.1, OsCPK17.2, OsCPK17.3, OsCPK17.4, OsCPK17.5,OsCDPK24, OsCPK24, OsCDPK14, CPK24,OsCDPK21, OsCPK21, CPK21, CPK-21,OsCDPK25, OsCPK25, CPK25,OsCDPK13, OsCPK13, OsCDPK7, CDPK7, OsCPK13-1, OsCPK13-2,OsCDPK11, OsCPK11, CPK11,OsCDPK30, OsCPK30, CPK30,OsCDPK28, OsCPK28, CPK28,OsCDPK2, OsCPK2, CPK2,OsCDPK27, OsCPK27, CPK27,OsCDPK3, OsCPK3, CPK3,OsCDPK20, OsCPK20, CPK20,OsCDPK7, OsCPK7, CDPK1, OsCDPK11, CDPK12, OsCDPK13,OsCDPK9, OsCPK9, CPK9,OsCDPK31, OsCPK31, CPK31,OsCDPK5, OsCPK5, CPK5,OsCDPK14, OsCPK14, CPK14,OsCDPK18, OsCPK18, CDPK5, OsCDPK5, CPK18,CDPK 1, CDPK1, CDPK23, OsCDPK23, OsCPK23, CPK23, OsSPK,OsCDPK4, OsCPK4, CPK4, CDPK1,CDPK12, OsCDPK12, OsCPK12, CPK12, OsESL4
31603	19259642	Zhou Y,Cai H,Xiao J,Li X,Zhang Q,Lian X	Over-expression of aspartate aminotransferase genes in rice resulted in altered nitrogen metabolism and increased amino acid content in seeds.	Theor. Appl. Genet.	118	1381-90	2009		
31604	19258439	Zhao Y,Hu Y,Dai M,Huang L,Zhou DX	The WUSCHEL-related homeobox gene WOX11 is required to activate shoot-borne crown root development in rice.	Plant Cell	21	736-48	2009	WOX11,RR2	OsWOX11, Os WOX11, OsWOX12A,rr2, Osrr2, OsRR2, Rra10, OsRRA10
31605	19252083	Yi M,Chi MH,Khang CH,Park SY,Kang S,Valent B,Lee YH	The ER chaperone LHS1 is involved in asexual development and rice infection by the blast fungus Magnaporthe oryzae.	Plant Cell	21	681-95	2009		
31606	19251430	Li QF,Zhang GY,Dong ZW,Yu HX,Gu MH,Sun SS,Liu QQ	Characterization of expression of the OsPUL gene encoding a pullulanase-type debranching enzyme during seed development and germination in rice.	Plant Physiol. Biochem.	47	351-8	2009		
31607	19250836	Lin CW,Lin CY,Chang CC,Lee RH,Tsai TM,Chen PY,Chi WC,Huang HJ	Early signalling pathways in rice roots under vanadate stress.	Plant Physiol. Biochem.	47	369-76	2009		
31608	19247688	Takaiwa F,Hirose S,Takagi H,Yang L,Wakasa Y	Deposition of a recombinant peptide in ER-derived protein bodies by retention with cysteine-rich prolamins in transgenic rice seed.	Planta.	229	1147-58	2009		
31609	19246394	Takahashi Y,Teshima KM,Yokoi S,Innan H,Shimamoto K	Variations in Hd1 proteins, Hd3a promoters, and Ehd1 expression levels contribute to diversity of flowering time in cultivated rice.	Proc. Natl. Acad. Sci. U.S.A.	106	4555-60	2009	EF1,MADS51,GI,SE1,HD3A	Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,OsMADS51, OsMADS65, MADS65, qHd1, DLN36, OsDLN36,OsGI, Gi, Os-GI,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, OsHd1,  Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a 
31610	19242671	Takai T,Ohsumi A,San-oh Y,Laza MR,Kondo M,Yamamoto T,Yano M	Detection of a quantitative trait locus controlling carbon isotope discrimination and its contribution to stomatal conductance in japonica rice.	Theor. Appl. Genet.	118	1401-10	2009		
31611	19234674	Peremarti A,Bassie L,Christou P,Capell T	Spermine facilitates recovery from drought but does not confer drought tolerance  in transgenic rice plants expressing Datura stramonium S-adenosylmethionine decarboxylase.	Plant Mol. Biol.	70	253-64	2009		
31612	19234555	Wang WY,Ding HF,Li GX,Jiang MS,Li RF,Liu X,Zhang Y,Yao FY	Delimitation of the PSH1(t) gene for rice purple leaf sheath to a 23.5 kb DNA fragment.	Genome	52	268-74	2009		
31613	19233441	Seto Y,Hamada S,Matsuura H,Matsushige M,Satou C,Takahashi K,Masuta C,Ito H,Matsui H,Nabeta K	Purification and cDNA cloning of a wound inducible glucosyltransferase active toward 12-hydroxy jasmonic acid.	Phytochemistry	70	370-9	2009	SGT	OsSGT, UGT74H3, OsUGT74H3
31614	19232772	Kato-Noguchi H,Kobayashi K	Jasmonic acid, protein phosphatase inhibitor, metals and UV-irradiation increased momilactone A and B concentrations in the moss Hypnum plumaeforme.	J. Plant Physiol.	166	1118-22	2009		
31615	19232310	Chen T,Zhang Y,Zhao L,Zhu Z,Lin J,Zhang S,Wang C	Fine mapping and candidate gene analysis of a green-revertible albino gene gra(t) in rice.	J Genet Genomics	36	117-23	2009		
31616	19232050	Zhang N,Wang X,Chen J	Role of OsHAL3 protein, a putative 4'-phosphopantothenoylcysteine decarboxylase in rice.	Biochemistry (Mosc)	74(1)	61-67	2009	_	OsHAL3, HAL3
31617	19229638	Yang Z,Wu Y,Li Y,Ling HQ,Chu C	OsMT1a, a type 1 metallothionein, plays the pivotal role in zinc homeostasis and  drought tolerance in rice.	Plant Mol. Biol.	70	219-29	2009		
31618	19229294	Kaneda T,Taga Y,Takai R,Iwano M,Matsui H,Takayama S,Isogai A,Che FS	The transcription factor OsNAC4 is a key positive regulator of plant hypersensitive cell death.	EMBO J.	28	926-36	2009	IREN,HSP90,NAC4	,OsHsp90, rHSP90, OsHSP90, GRP94, OsGRP94,OsNAC4, NAC68, ONAC068, OnNAC4*, OnNAC4, OsNAC4/ONAC068
31619	19225807	Yokotani N,Ichikawa T,Kondou Y,Matsui M,Hirochika H,Iwabuchi M,Oda K	Tolerance to various environmental stresses conferred by the salt-responsive rice gene ONAC063 in transgenic Arabidopsis.	Planta.	229	1065-75	2009	NAC63	ONAC063, ONAC63
31620	19224952	Fujii S,Yamada M,Toriyama K	Cytoplasmic male sterility-related protein kinase, OsNek3, is regulated downstream of mitochondrial protein phosphatase 2C, DCW11.	Plant Cell Physiol.	50	828-37	2009	AOX1A,PLIM2C,PLIM2A,DCW11,_,_,_,_,_,_	Ao1-1, AOX1a, OsAOX1a, AOX 1a,OsPLIM2c, PLIM2c,OsPLIM2a, PLIM2a,DCW11, OsPP2C13, PP2C13, OsPP22,OsNek3, OsSTA192,OsNek2,OsNek6,OsNek1,OsNek4,OsNek5
31621	19224195	Xu Y,This D,Pausch RC,Vonhof WM,Coburn JR,Comstock JP,McCouch SR	Leaf-level water use efficiency determined by carbon isotope discrimination in rice seedlings: genetic variation associated with population structure and QTL mapping.	Theor. Appl. Genet.	118	1065-81	2009		
31622	19220793	Tong H,Jin Y,Liu W,Li F,Fang J,Yin Y,Qian Q,Zhu L,Chu C	DWARF AND LOW-TILLERING, a new member of the GRAS family, plays positive roles in brassinosteroid signaling in rice.	Plant J.	58	803-16	2009	D2,BZR1,BRD1,D11,DLT,CPD1	d2, dwf2, CYP90D2, D2/CYP90D2, OsD2, SMG11, OsSMG11, D2/SMG11, OsD2a, OsD2b,OsBZR1, Os BZR1, OsBES1-6, BES1-6,brd1, OsDWARF, DWARF, OsBR6ox, BR6ox, CYP85A1, CYP85A4, OsDWF, CYP85A1/OsDWARF, OsBRD1, OsCYP85A1,d11(d8), dwf10, d8, D11/CYP724B1, d11, CYP724B1, GNS4, OsD11, PMM1, OsPMM1, PMM1/D11, NBG4, OsCPB1, CPB1, CPB1/D11,dlt, OsGRAS32, OsDLT, OsDLT1, DTL1, OsGRAS-32, OsGRAS32, GRAS-32, GRAS32, SMOS2/DLT, SMOS2, OsSMOS2, OsGS6, GS6,OsCPD1, CYP90A3, CYP90A3/OsCPD1, CPD, OsCPD2, CPD2
31623	19219608	Tougou M,Yamagishi N,Furutani N,Kaku K,Shimizu T,Takahata Y,Sakai J,Kanematsu S,Hidaka S	The application of the mutated acetolactate synthase gene from rice as the selectable marker gene in the production of transgenic soybeans.	Plant Cell Rep.	28	769-76	2009		
31624	19214808	Kumari S,Singh P,Singla-Pareek SL,Pareek A	Heterologous expression of a salinity and developmentally regulated rice cyclophilin gene (OsCyp2) in E. coli and S. cerevisiae confers tolerance towards  multiple abiotic stresses.	Mol Biotechnol	42	195-204	2009		
31625	19214435	Shin JH,Yoshimoto K,Ohsumi Y,Jeon JS,An G	OsATG10b, an autophagosome component, is needed for cell survival against oxidative stresses in rice.	Mol. Cells	27	67-74	2009		
31626	19211695	Kim EH,Kim YS,Park SH,Koo YJ,Choi YD,Chung YY,Lee IJ,Kim JK	Methyl jasmonate reduces grain yield by mediating stress signals to alter spikelet development in rice.	Plant Physiol.	149	1751-60	2009		
31627	19208695	Zhu G,Ye N,Zhang J	Glucose-induced delay of seed germination in rice is mediated by the suppression  of ABA catabolism rather than an enhancement of ABA biosynthesis.	Plant Cell Physiol.	50	644-51	2009	NCED2,ABA8OX3,NCED3,ABA8OX2,NCED2,NCED1,NCED1	OsNCED2, OsNced2, OsCCD4b, CCD4b, OsCCD4c, CCD4c,OsABA8OX3, OsABA8ox3, CYP707A7, OsCYP707A7, OsAba-ox3, OsABA8ox3, OsABA8'ox3, ABA8'ox3, OsABAX3, ABAX3, OsABA8'OH3, ABA8'OH3,OSNCED3, OsNCED-3, OsNCED3, OsNCED3a, NCED3a, OsNCED4, NCED4, OsNECD2, OsNCED2b, NCED2b ,OsABA8OX2, OsABA8ox2, CYP707A6, OsCYP707A6, OsAba-ox2, OsABA8ox2, OsABA8OH2, ABA8OH2, ABA8'-OH2, OsABA8'ox2, ABA8'ox2, OsABAX2, ABAX2, OsABA8'OH2, ABA8'OH2,OSNCED2, OsNCED2, OsNCED5, NCED5,OSNCED1, OsNCED-1, OsNCED3, OsNced3, NCED3, OsNCED9, NCED9,OsNCED1, OsCCD4a, CCD4a
31628	19205894	Li H,Yang J,Wang Y,Chen Z,Tu S,Feng L,Zhu Y,Li Y	Expression of a novel OSPGYRP (rice proline-, glycine- and tyrosine-rich protein) gene, which is involved in vesicle trafficking, enhanced cold tolerance in E. coli.	Biotechnol. Lett.	31	905-10	2009	PGYRP	OSPGYRP
31629	19199048	Zhang ZL,Shin M,Zou X,Huang J,Ho TH,Shen QJ	A negative regulator encoded by a rice WRKY gene represses both abscisic acid and gibberellins signaling in aleurone cells.	Plant Mol. Biol.	70	139-51	2009		
31630	19198875	Li D,Yang C,Li X,Gan Q,Zhao X,Zhu L	Functional characterization of rice OsDof12.	Planta.	229	1159-69	2009		
31631	19192388	Liu JG,Qin QL,Zhang Z,Peng RH,Xiong AS,Chen JM,Yao QH	OsHSF7 gene in rice, Oryza sativa L., encodes a transcription factor that functions as a high temperature receptive and responsive factor.	BMB Rep	42	16-21	2009	HSFA2D,HSFA4A,HSFA2B	HSfA2d, OsHsfA2d, OsHsf-08, rHsf7, HSF08, OsHSF8, HSF8, HSF7, OsHSF7, OsHSFA2dI, OsHSFA2dII, OsHSFA2dIII, OsHsfA6b, HsfA6b, OsHsf2d, Hsf2d,OsHsfA4a, OsHsf-04, HSFA4B, HSF04, OsHSF4, HSF4, HSF9, OsHsfA4b, OsHSF9,HSfA2b, OsHsfA2b, OsHsf-18, rHsf5, HS1, HSF18, OsHSF18, HSF5, OsHSF5
31632	19190097	Fujita N,Toyosawa Y,Utsumi Y,Higuchi T,Hanashiro I,Ikegami A,Akuzawa S,Yoshida M,Mori A,Inomata K,Itoh R,Miyao A,Hirochika H,Satoh H,Nakamura Y	Characterization of pullulanase (PUL)-deficient mutants of rice (Oryza sativa L.) and the function of PUL on starch biosynthesis in the developing rice endosperm.	J. Exp. Bot.	60	1009-23	2009	PUL	OsPUL, SDBE, OsPUL3, RE
31633	19187041	Picault N,Chaparro C,Piegu B,Stenger W,Formey D,Llauro C,Descombin J,Sabot F,Lasserre E,Meynard D,Guiderdoni E,Panaud O	Identification of an active LTR retrotransposon in rice.	Plant J.	58	754-65	2009	TOS19,TOS17	Tos19, Lullaby,Tos17, Osr21, Tos17chr10, Tos17_Chr10, Tos17chr7, Tos17_Chr7
31634	19184094	Riemann M,Bouyer D,Hisada A,Muller A,Yatou O,Weiler EW,Takano M,Furuya M,Nick P	Phytochrome A requires jasmonate for photodestruction.	Planta.	229	1035-45	2009		
31635	19183860	Chapman NH,Burt C,Nicholson P	The identification of candidate genes associated with Pch2 eyespot resistance in  wheat using cDNA-AFLP.	Theor. Appl. Genet.	118	1045-57	2009		
31636	19183299	Lee S,An G	Over-expression of OsIRT1 leads to increased iron and zinc accumulations in rice.	Plant Cell Environ.	32	408-16	2009		
31637	19181865	Slewinski TL,Meeley R,Braun DM	Sucrose transporter1 functions in phloem loading in maize leaves.	J. Exp. Bot.	60	881-92	2009		
31638	19179350	Purwestri YA,Ogaki Y,Tamaki S,Tsuji H,Shimamoto K	The 14-3-3 protein GF14c acts as a negative regulator of flowering in rice by interacting with the florigen Hd3a.	Plant Cell Physiol.	50	429-38	2009	HD3A,GF14G,GF14C,GF14A,GF14D,GF14H,GF14F,GID2,GF14B	Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,GF14g, OsGF14g, 14-3-3g,GF14c, OsGF14c, 14-3-3c,GF14a, OsGF14a, WIN2, 14-3-3a,GF14d, OsGF14d, Os14-3-3, 14-3-3d,GF14h, OsGF14h, 14-3-3h,GF14f, SR14-3-3, OsGF14f, S94, ric1, 14-3-3f,gid2, GF14e, OsGF14e, OsGID2, 14-3-3e,GF14b, OsGF14b, 14-3-3b
31639	19179349	Srinivasan T,Kumar KR,Kirti PB	Constitutive expression of a trypsin protease inhibitor confers multiple stress tolerance in transgenic tobacco.	Plant Cell Physiol.	50	541-53	2009		
31640	19175766	Orashakova S,Lange M,Lange S,Wege S,Becker A	The CRABS CLAW ortholog from California poppy (Eschscholzia californica, Papaveraceae), EcCRC, is involved in floral meristem termination, gynoecium differentiation and ovule initiation.	Plant J.	58	682-93	2009		
31641	19161943	Wang B,Sang Y,Song J,Gao XQ,Zhang X	Expression of a rice OsARGOS gene in Arabidopsis promotes cell division and expansion and increases organ size.	J Genet Genomics	36	31-40	2009	_	OsARGOS 
31642	19161601	De Vleesschauwer D,Chernin L,Hofte MM	Differential effectiveness of Serratia plymuthica IC1270-induced systemic resistance against hemibiotrophic and necrotrophic leaf pathogens in rice.	BMC Plant Biol	9	9	2009		
31643	19157639	Wang A,Tang J,Li D,Chen C,Zhao X,Zhu L	Isolation and functional analysis of LiYAB1, a YABBY family gene, from lily (Lilium longiflorum).	J. Plant Physiol.	166	988-95	2009		
31644	19154618	Kashiwagi T,Shindoh K,Hirotsu N,Ishimaru K	Evidence for separate translocation pathways in determining cadmium accumulation  in grain and aerial plant parts in rice.	BMC Plant Biol	9	8	2009		
31645	19154227	Wang Y,Zhu S,Liu S,Jiang L,Chen L,Ren Y,Han X,Liu F,Ji S,Liu X,Wan J	The vacuolar processing enzyme OsVPE1 is required for efficient glutelin processing in rice.	Plant J.	58	606-17	2009	GLUP3	glup3(esp7), esp7, glup3, OsVPE1, VPE1, OsaLeg3
31646	19154200	Li S,Qian Q,Fu Z,Zeng D,Meng X,Kyozuka J,Maekawa M,Zhu X,Zhang J,Li J,Wang Y	Short panicle1 encodes a putative PTR family transporter and determines rice panicle size.	Plant J.	58	592-605	2009	SP1	sp, SP, OsNPF4.1, NPF4.1, OsSP1
31647	19153709	Yang Q,Lin F,Wang L,Pan Q	Identification and mapping of Pi41, a major gene conferring resistance to rice blast in the Oryza sativa subsp. indica reference cultivar, 93-11.	Theor. Appl. Genet.	118	1027-34	2009	PI41,PI24	Pi41(t), Pi41,Pi24, Pi24(t)
31648	19153708	Zhang Y,Luo L,Liu T,Xu C,Xing Y	Four rice QTL controlling number of spikelets per panicle expressed the characteristics of single Mendelian gene in near isogenic backgrounds.	Theor. Appl. Genet.	118	1035-44	2009		
31649	19152316	Ko S,Yu EY,Shin J,Yoo HH,Tanaka T,Kim WT,Cho HS,Lee W,Chung IK	Solution structure of the DNA binding domain of rice telomere binding protein RTBP1.	Biochemistry	48	827-38	2009		
31650	19060383	Ko KW,Lin F,Katsumata T,Sugai Y,Miyazaki S,Kawaide H,Okada K,Nojiri H,Yamane H	Functional identification of a rice ent-kaurene oxidase, OsKO2, using the Pichia  pastoris expression system.	Biosci. Biotechnol. Biochem.	72	3285-8	2008		
31651	19055717	Lacombe S,Nagasaki H,Santi C,Duval D,Piegu B,Bangratz M,Breitler JC,Guiderdoni E,Brugidou C,Hirsch J,Cao X,Brice C,Panaud O,Karlowski WM,Sato Y,Echeverria M	Identification of precursor transcripts for 6 novel miRNAs expands the diversity  on the genomic organisation and expression of miRNA genes in rice.	BMC Plant Biol	8	123	2008	MIR1428E,MIR159A,MIR1425,miR1874,miR827,miR1428.1,MIR1428D,MIR2055	OsmiR1428e, miR1428e, osa-miR1428e, osa-MIR1428e, miR1428e_3posa-miR1428e-3p,miR159a, osa-miR159a, osa-MIR159a, OsmiR159a, OsmiR159a.2, miR159a.2, OsmiR159a.1, miR159a.1, osa-miR159a.1, osa-miR159a.2,OsmiR1425, miR1425, osa-miR1425, osa-MIR1425, osa-miR1425-3p, osa-miR1425-5p,OsmiR1874, osa-MIR1874osa-miR1874 osa-miR1874-3p,miR827a, OsmiR827a, miR827, osa-miR827, osa-MIR827, OsMiR827, miR827b, osa-miR827b, osa-MIR827b,OsmiR1428.1, osa-miR1428.1,miR1428d, osa-miR1428d, osa-MIR1428d,miR2055, OsmiR2055, osa-miR2055, osa-MIR2055
31652	19017488	Phean-o-pas S,Limpaseni T,Buaboocha T	Structure and expression analysis of the OsCam1-1 calmodulin gene from Oryza sativa L.	BMB Rep	41	771-7	2008		
31653	19014580	Kubo N,Fujimoto M,Arimura S,Hirai M,Tsutsumi N	Transfer of rice mitochondrial ribosomal protein L6 gene to the nucleus: acquisition of the 5'-untranslated region via a transposable element.	BMC Evol. Biol.	8	314	2008	_,_	OsRpl6-2, Rpl6-2,OsRpl6-1
31654	19011360	Shin SY,Kim IS,Kim YH,Park HM,Lee JY,Kang HG,Yoon HS	Scavenging reactive oxygen species by rice dehydroascorbate reductase alleviates  oxidative stresses in Escherichia coli.	Mol. Cells	26	616-20	2008		
31655	18953406	Wang L,Xu Y,Zhang C,Ma Q,Joo SH,Kim SK,Xu Z,Chong K	OsLIC, a Novel CCCH-Type Zinc Finger Protein with Transcription Activation, Mediates Rice Architecture via Brassinosteroids Signaling.	PLoS One	3	e3521	2008	D2, LIC,D61	d2, dwf2, CYP90D2, D2/CYP90D2, OsD2, SMG11, OsSMG11, D2/SMG11, OsD2a, OsD2b,OsC3H46, C3H46, OsLIC, OsFLA6, FLA6,d61*, dwf42, d61, OsBRI1, OSBRI1, BRI1, Os BRI1, Osbri1, OsBRKq1, BRKq1
31656	18946700	Liu D,Lu Z,Mao Z,Liu S	Enhanced thermotolerance of E. coli by expressed OsHsp90 from rice (Oryza sativa  L.).	Curr Microbiol	58	129-33	2009		
31657	18840300	Niu X,Tang W,Huang W,Ren G,Wang Q,Luo D,Xiao Y,Yang S,Wang F,Lu BR,Gao F,Lu T,Liu Y	RNAi-directed downregulation of OsBADH2 results in aroma (2-acetyl-1-pyrroline) production in rice (Oryza sativa L.).	BMC Plant Biol	8	100	2008	BAD1,SK2(T)(SCL, FGR)	Badh1, badh1, BAD1, BADH1, OsBADH1, BADH, OsALDH10A5, ALDH10A5 ,sk2(t)(scl, fgr), fgr, scl, BAD2, BADH2, sk2, OsBADH2, Badh2, badh2, Os2AP, BADH-2, OsALDH10A8, ALDH10A8 
31658	18811733	Lee SK,Jeon JS,Bornke F,Voll L,Cho JI,Goh CH,Jeong SW,Park YI,Kim SJ,Choi SB,Miyao A,Hirochika H,An G,Cho MH,Bhoo SH,Sonnewald U,Hahn TR	Loss of cytosolic fructose-1,6-bisphosphatase limits photosynthetic sucrose synthesis and causes severe growth retardations in rice (Oryza sativa).	Plant Cell Environ.	31	1851-63	2008		
31659	18804072	Yang W,Kong Z,Omo-Ikerodah E,Xu W,Li Q,Xue Y	Calcineurin B-like interacting protein kinase OsCIPK23 functions in pollination and drought stress responses in rice (Oryza sativa L.).	J Genet Genomics	35	531-43, S1-2	2008		
31660	18796165	Li D,Yang C,Li X,Ji G,Zhu L	Sense and antisense OsDof12 transcripts in rice.	BMC Mol Biol	9	80	2008	DOF12OS,RDD4	OsDof12os, Dof12os,OsDof12, Dof12, OsDof-12, OsCDF1, OsCDF1/OsDOF12, OsDOF12, CDF1, DOF12, OsDof11, Dof11
31661	18779926	Chen JQ,Meng XP,Zhang Y,Xia M,Wang XP	Over-expression of OsDREB genes lead to enhanced drought tolerance in rice.	Biotechnol. Lett.	30	2191-8	2008	ERF28,ERF42	OsERF#028, OsERF028, OsERF28, OsERF#029, OsERF029, OsERF29, ERF29, DERF4, OsDERF4, AP2/EREBP#161, AP2/EREBP161, OsDREB1J, OsDREB1I, OsDREB1G,OsERF#042, OsERF042, OsERF42, AP2/EREBP#048, AP2/EREBP48, OsDREB2B, DREB2B, OsDREB2B2, OsDREB2A, DREB2A
31662	18779180	Hu JT,Zhang J,Li YY,Fu CY,Zheng J,Chen JB,Hu Y,Li SG	[Genetic analysis and mapping of a rice white midrib mutant Oswm2]	Yi Chuan	30	1201-6	2008		
31663	18779157	Wang L,Cai H,Bai X,Li LW,Li Y,Zhu YM	[Cultivation of transgenic rice plants with OsCDPK7 gene and its salt tolerance]	Yi Chuan	30	1051-5	2008		
31664	18765925	Oda T,Hashimoto H,Kuwabara N,Hayashi K,Kojima C,Kawasaki T,Shimamoto K,Sato M,Shimizu T	Crystallographic characterization of the N-terminal domain of a plant NADPH oxidase.	Acta Crystallogr Sect F Struct Biol Cryst Commun	64	867-9	2008		
31665	18755073	Cho JH,Kim HB,Kim HS,Choi SB	Identification and characterization of a rice MCM2 homologue required for DNA replication.	BMB Rep	41	581-6	2008		
31666	18721784	Zheng B,Yang L,Mao C,Huang Y,Wu P	Comparison of QTLs for rice seedling morphology under different water supply conditions.	J Genet Genomics	35	473-84	2008		
31667	18713381	Wang YQ,Wei XL,Xu HL,Chai CL,Meng K,Zhai HL,Sun AJ,Peng YG,Wu B,Xiao GF,Zhu Z	Cell-wall invertases from rice are differentially expressed in Caryopsis during the grain filling stage.	J. Integr. Plant Biol.	50	466-74	2008		
31668	18713378	Cai C,Wang JY,Zhu YG,Shen QR,Li B,Tong YP,Li ZS	Gene structure and expression of the high-affinity nitrate transport system in rice roots.	J. Integr. Plant Biol.	50	443-51	2008		
31669	18676379	Mitani N,Yamaji N,Ma JF	Identification of maize silicon influx transporters.	Plant Cell Physiol.	50	5-12	2009		
31670	18668337	Giani S,Altana A,Campanoni P,Morello L,Breviario D	In trangenic rice, alpha- and beta-tubulin regulatory sequences control GUS amount and distribution through intron mediated enhancement and intron dependent  spatial expression.	Transgenic Res	18	151-62	2009		
31671	18666953	Sun AJ,Xu HL,Gong WK,Zhai HL,Meng K,Wang YQ,Wei XL,Xiao GF,Zhu Z	Cloning and expression analysis of rice sucrose transporter genes OsSUT2M and OsSUT5Z.	J. Integr. Plant Biol.	50	62-75	2008	SUT2,SUT5	OsSUT2(t), SUT2M, OsSUT2, OsSUT2M, OsSUT5,OsSUT5(t), OsSUT5Z, OsSUT5
31672	18603363	Jalloh MA,Chen J,Zhen F,Zhang G	Effect of different N fertilizer forms on antioxidant capacity and grain yield of rice growing under Cd stress.	J Hazard Mater	162	1081-5	2009		
31673	18594887	Kumari S,Sabharwal VP,Kushwaha HR,Sopory SK,Singla-Pareek SL,Pareek A	Transcriptome map for seedling stage specific salinity stress response indicates  a specific set of genes as candidate for saline tolerance in Oryza sativa L.	Funct Integr Genomics	9	109-23	2009		
31674	18593528	Chang-Qing Z,Shunsaku N,Shenkui L,Tetsuo T	Characterization of two plasma membrane protein 3 genes (PutPMP3) from the alkali grass, Puccinellia tenuiflora, and functional comparison of the rice homologues,  OsLti6a/b from rice.	BMB Rep	41	448-54	2008		
31675	18589810	Yang K,Fu Y,Zhang Y,Yan Y,Zhao Z,Fang R,Sun Z,Chen X	[Analysis of rice OsPLD3 and OsPLD4 genes and promoters]	Sheng Wu Gong Cheng Xue Bao	24	368-75	2008		
31676	18544156	Bienert GP,Thorsen M,Schussler MD,Nilsson HR,Wagner A,Tamas MJ,Jahn TP	A subgroup of plant aquaporins facilitate the bi-directional diffusion of As(OH)3 and Sb(OH)3 across membranes.	BMC Biol.	6	26	2008	NIP3;2,LSI6,LSI1	OsNIP3;2, NIP3-2, OsNIP3.2, NIP3.2,Lsi6, OsNIP2;2, NIP2-2, OsLsi6, OsNIP2.2/OsLsi6, OsNIP2.2, NIP2.2,lsi1, NIP2-1, OsNIP2;1, NIP2;1, OsLsi1, lsi(t), OsNIP2.1/OsLsi1/OsSIIT1, OsNIP2.1, NIP2.1
31677	18433929	Lee DG,Ahsan N,Lee SH,Lee JJ,Bahk JD,Kang KY,Lee BH	Chilling stress-induced proteomic changes in rice roots.	J. Plant Physiol.	166	1-11	2009		
31678	18422887	Li M,Singh R,Bazanova N,Milligan AS,Shirley N,Langridge P,Lopato S	Spatial and temporal expression of endosperm transfer cell-specific promoters in  transgenic rice and barley.	Plant Biotechnol J.	6	465-76	2008		
31679	18323646	Mizuno R,Itoh Y,Nishizawa Y,Kezuka Y,Suzuki K,Nonaka T,Watanabe T	Purification and characterization of a rice class I chitinase, OsChia1b, produced in Esherichia coli.	Biosci. Biotechnol. Biochem.	72	893-5	2008		
31680	18315698	Shobbar ZS,Oane R,Gamuyao R,De Palma J,Malboobi MA,Karimzadeh G,Javaran MJ,Bennett J	Abscisic acid regulates gene expression in cortical fiber cells and silica cells  of rice shoots.	New Phytol.	178	68-79	2008	LEA3-1,WSI18,BC7,EM,BC6,TRAB1,BZIP9,BZIP42,BZIP62,BZIP72,BZIP23,CESA7,ABI5,BZIP46,VP1	OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3, OsLEA3A, LEA3A,OsLEA14, OsLEA14a, OsLEA14b, wsi18, pwsi18, OsWsi18, OsLEA14/WSI18,OsCesA4, OsCESA4, CESA4, OS_CESA04, BC11, bc7t, Bc7(t), bc-7, OsCesA 4, CesA4, FC17/CESA4, FC17, OsFC17,Em*, EMP1, Emp1, EM, Em, OsEm, Osem, OsLEA21, OsEm1, Em1 ,Bc6*, Bc6, OsCesA9, CESA9, OsCESA9, OS_CESA09, OsCesA 9, CesA9, BC88, SDBC1, OsSDBC1,OsbZIP66, OsABF5, Osbzip66, OsTRAB1, bZIP66, ABF5,OsbZIP09, OsbZIP9, OsABF6, ABF6, HBF2,OsbZIP42, OsABF7, ABF7, HBF1, DLN149, OsDLN149,OsbZIP62, OsABF8, OsEEL, EEL,OsbZIP72, OsAREB2, OsABF4, ABF4, Osbzip72, OsABI5, ABI5,OsbZIP23, OsAREB1, OsABF2, Osbzip23, OsAREB2, OsZIP23, ZIP23,OsCesA7, OsCESA7, OS_CESA07, OsCesA 7, CesA7,OsABI5, OsbZIP10, OsABF1, OREB1, OsABI5-1, OsABI5-2, OsOREB1, OREB1 ,ABL1, bZIP46, OsABL1, OsbZIP46, OsAREB8, OsABF2, ABF2, OsABF3, ABF3, OsbZIP46CA1, OsZIP46, ZIP46, OsbZIP46/OsABF2,Vp1* (OSVP1), OsVP1, OsVp1, Vp1, ABI3, OsABI3, OsLFL4, OsVp-1, OSVP1
31681	18304453	Lee YJ,Kim JH,Kim BG,Lim Y,Ahn JH	Characterization of flavone synthase I from rice.	BMB Rep	41	68-71	2008		
31682	18283411	Komatsu S,Jan A,Koga Y	Characterization of a histidine- and alanine-rich protein showing interaction with calreticulin in rice.	Amino Acids	36	137-46	2009	HARP	OsHARP
31683	18282189	Kudo T,Kawai A,Yamaya T,Hayakawa T	Cellular distribution of ACT domain repeat protein 9, a nuclear localizing protein, in rice (Oryza sativa).	Physiol Plant	133	167-79	2008		
31684	18266905	Riemann M,Riemann M,Takano M	Rice JASMONATE RESISTANT 1 is involved in phytochrome and jasmonate signalling.	Plant Cell Environ.	31	783-92	2008		
31685	18257679	Wang Y,Gao M,Li Q,Wang L,Wang J,Jeon JS,Qu N,Zhang Y,He Z	OsRAR1 and OsSGT1 physically interact and function in rice basal disease resistance.	Mol. Plant Microbe Interact.	21	294-303	2008	SGT1,RAR1	OsSgt1, OsSGT1, Os SGT1,Os RAR1, OsRAR1
31686	18256497	Hayashi Y,Toyomasu T,Hirose Y,Onodera Y,Mitsuhashi W,Yamane H,Sassa T,Dairi T	Comparison of the enzymatic properties of ent-copalyl diphosphate synthases in the biosynthesis of phytoalexins and gibberellins in rice.	Biosci. Biotechnol. Biochem.	72	523-30	2008		
31687	18246316	Li A,Chen L,Ren H,Wang X,Zhang H,Huang RF	Analysis of the essential DNA region for OsEBP-89 promoter in response to methyl  jasmonic acid.	Sci. China, C, Life Sciences	51	280-5	2008		
31688	18223202	Komiya R,Ikegami A,Tamaki S,Yokoi S,Shimamoto K	Hd3a and RFT1 are essential for flowering in rice.	Development	135	767-74	2008	RFT1,RAP1B,HD3A,RAP1A	FT-L 3, OsFTL3, FTL3, FT-L3, RFT, OsRFT1,MADS14, OsMADS14, FDRMADS6, RMADS211, AGL10,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,OsMADS15, FDRMADS3, RMADS215, MADS15, DEP
31689	18214526	Mitani N,Yamaji N,Ma JF	Characterization of substrate specificity of a rice silicon transporter, Lsi1.	Pflugers Arch	456	679-86	2008	LSI1,NIP1;1,ASA,LSI6	lsi1, NIP2-1, OsNIP2;1, NIP2;1, OsLsi1, lsi(t), OsNIP2.1/OsLsi1/OsSIIT1, OsNIP2.1, NIP2.1,OsNIP1;1, NIP1-1, rMIP1, MIP1, OsNIP1.1, NIP1.1,OsNIP3;1, NIP3;1, NIP3-1, OsNIP3.1, NIP3.1, OsASA,Lsi6, OsNIP2;2, NIP2-2, OsLsi6, OsNIP2.2/OsLsi6, OsNIP2.2, NIP2.2
31690	18211919	Mizuno R,Fukamizo T,Sugiyama S,Nishizawa Y,Kezuka Y,Nonaka T,Suzuki K,Watanabe T	Role of the loop structure of the catalytic domain in rice class I chitinase.	J. Biochem.	143	487-95	2008		
31691	18183401	Roychoudhury A,Gupta B,Sengupta DN	Trans-acting factor designated OSBZ8 interacts with both typical abscisic acid responsive elements as well as abscisic acid responsive element-like sequences in the vegetative tissues of indica rice cultivars.	Plant Cell Rep.	27	779-94	2008		
31692	18071364	Zhang J,Peng Y,Guo Z	Constitutive expression of pathogen-inducible OsWRKY31 enhances disease resistance and affects root growth and auxin response in transgenic rice plants.	Cell Res	18	508-21	2008		
31693	18071256	Sobajima H,Tani T,Chujo T,Okada K,Suzuki K,Mori S,Minami E,Nishiyama M,Nojiri H,Yamane H	Identification of a jasmonic acid-responsive region in the promoter of the rice 12-oxophytodienoic acid reductase 1 gene OsOPR1.	Biosci. Biotechnol. Biochem.	71	3110-5	2007	OPR1	OsOPR1, OsOPR2, OsOPR11, OsOPR06-6, OPDAR1, OsOPR, OPDAR
31694	18057047	Fan J,Niu X,Wang Y,Ren G,Zhuo T,Yang Y,Lu BR,Liu Y	Short, direct repeats (SDRs)-mediated post-transcriptional processing of a transcription factor gene OsVP1 in rice (Oryza sativa).	J. Exp. Bot.	58	3811-7	2007		
31695	18052121	Frank T,Meuleye BS,Miller A,Shu QY,Engel KH	Metabolite profiling of two low phytic acid (lpa) rice mutants.	J. Agric. Food Chem.	55	11011-9	2007		
31696	18037139	Yan C,Yan S,Zeng X,Zhang Z,Gu M	Fine mapping and isolation of Bc7(t), allelic to OsCesA4.	J Genet Genomics	34	1019-27	2007	BC7	OsCesA4, OsCESA4, CESA4, OS_CESA04, BC11, bc7t, Bc7(t), bc-7, OsCesA 4, CesA4, FC17/CESA4, FC17, OsFC17
31697	17986178	Cai M,Qiu D,Yuan T,Ding X,Li H,Duan L,Xu C,Li X,Wang S	Identification of novel pathogen-responsive cis-elements and their binding proteins in the promoter of OsWRKY13, a gene regulating rice disease resistance.	Plant Cell Environ.	31	86-96	2008		
31698	17960050	Liu SM,Wang ZY,Cai XL	[Preliminary screening of target genes of rice transcription factor OsBP-73]	Zhi Wu Sheng Li Yu Fen Zi Sheng Wu Xue Xue Bao	33	456-62	2007		
31699	17916638	Hong CY,Hsu YT,Tsai YC,Kao CH	Expression of ASCORBATE PEROXIDASE 8 in roots of rice (Oryza sativa L.) seedlings in response to NaCl.	J. Exp. Bot.	58	3273-83	2007	APX1,APX8,APX2,APX4,APX7,APX6,APX3,APX5	OsAPX1, APXa, OsAPXa, OsAPx01, OsAPx1, OSAPX1, APx1, cAPX, APX2, cAPXa, OscAPXa,OsAPx8, OsAPx08, OSAPX8, APx8, OsAPX8,OsAPX2, OsAPx02, APXb, OsAPx2, OSAPX2, APx2, cAPX, OsAPX1, APX1,OsAPx4, OsAPx04, OSAPX4, APx4, pAPX4,OsAPx7, OsAPx07, OSAPX7, APx7, sAPX,OsAPx6, OsAPx06, OSAPX6, APx6,OsAPx3, OsAPx03, OSAPX3, APx3, mAPX,OsAPx5, OsAPx05, OSAPX5, APx5
31700	17914176	Heine GF,Malik V,Dias AP,Grotewold E	Expression and molecular characterization of ZmMYB-IF35 and related R2R3-MYB transcription factors.	Mol Biotechnol	37	155-64	2007		
31701	17888111	Mao C,Ding W,Wu Y,Yu J,He X,Shou H,Wu P	Overexpression of a NAC-domain protein promotes shoot branching in rice.	New Phytol.	176	288-98	2007	TIL1	NAC2, OsNAC2, ONAC004, ONAC4, ONAC034, ONAC34, ONAC058, ONAC58, OMTN2, Ostil1, OsNAC2/ONAC004, OsORE1.2, DLN113, OsDLN113
31702	17806099	Katsuyama Y,Funa N,Horinouchi S	Precursor-directed biosynthesis of stilbene methyl ethers in Escherichia coli.	Biotechnol J	2	1286-93	2007		
31703	17764519	Yoshida H,Itoh J,Ohmori S,Miyoshi K,Horigome A,Uchida E,Kimizu M,Matsumura Y,Kusaba M,Satoh H,Nagato Y	superwoman1-cleistogamy, a hopeful allele for gene containment in GM rice.	Plant Biotechnol J.	5	835-46	2007		
31704	17728297	Scofield GN,Hirose T,Aoki N,Furbank RT	Involvement of the sucrose transporter, OsSUT1, in the long-distance pathway for  assimilate transport in rice.	J. Exp. Bot.	58	3155-69	2007	SUT5,SUT1,SUT3,SUT4,SUT2	OsSUT5(t), OsSUT5Z, OsSUT5,OsSUT1, OsSUT2,OsSUT3(t), OsSUT3, SUC3, OsSUT2,OsSUT4(t), OsSUT4,OsSUT2(t), SUT2M, OsSUT2, OsSUT2M, OsSUT5
31705	17683575	Boden SA,Shadiac N,Tucker EJ,Langridge P,Able JA	Expression and functional analysis of TaASY1 during meiosis of bread wheat (Triticum aestivum).	BMC Mol Biol	8	65	2007		
31706	17676337	Liu HL,Xu YY,Xu ZH,Chong K	A rice YABBY gene, OsYABBY4, preferentially expresses in developing vascular tissue.	Dev Genes Evol	217	629-37	2007		
31707	17674779	Wu LJ,Zhang Z,Peng RH,Xiong AS,Liu JG,Fu XY,Gao F,Yao QH	[Cloning and bioinformatic analysis of the cDNA encoding a novel heat-shock factor OsHSF13 in Oryza sative L]	Fen Zi Xi Bao Sheng Wu Xue Bao	40	251-7	2007		
31708	17669266	Cho HY,Lee HJ,Kong KH	A phi class glutathione S-transferase from Oryza sativa (OsGSTF5): molecular cloning, expression and biochemical characteristics.	J. Biochem. Mol. Biol.	40	511-6	2007	GSTF5	OsGSTF5, OsGST F5
31709	17571267	Lu Z,Liu D,Liu S	Two rice cytosolic ascorbate peroxidases differentially improve salt tolerance in transgenic Arabidopsis.	Plant Cell Rep.	26	1909-17	2007		
31710	17562689	Akama K,Takaiwa F	C-terminal extension of rice glutamate decarboxylase (OsGAD2) functions as an autoinhibitory domain and overexpression of a truncated mutant results in the accumulation of extremely high levels of GABA in plant cells.	J. Exp. Bot.	58	2699-707	2007		
31711	17562293	Wang Z,Wang F,Duan R,Liu JY	Purification and physicochemical characterization of a recombinant phospholipid hydroperoxide glutathione peroxidase from Oryza sativa.	J. Biochem. Mol. Biol.	40	412-8	2007		
31712	17562286	Yao Y,Du Y,Jiang L,Liu JY	Molecular analysis and expression patterns of the 14-3-3 gene family from Oryza sativa.	J. Biochem. Mol. Biol.	40	349-57	2007	GF14F,GF14G,GF14D,GF14A,GF14H,GF14C,GID2,GF14B	GF14f, SR14-3-3, OsGF14f, S94, ric1, 14-3-3f,GF14g, OsGF14g, 14-3-3g,GF14d, OsGF14d, Os14-3-3, 14-3-3d,GF14a, OsGF14a, WIN2, 14-3-3a,GF14h, OsGF14h, 14-3-3h,GF14c, OsGF14c, 14-3-3c,gid2, GF14e, OsGF14e, OsGID2, 14-3-3e,GF14b, OsGF14b, 14-3-3b
31713	17556805	Xu QJ,Cui CR	[Genetic transformation of OSISAP1 gene to onion (Allium cepa L.) mediated by amicroprojectile bombardment]	Zhi Wu Sheng Li Yu Fen Zi Sheng Wu Xue Xue Bao	33	188-96	2007		
31714	17556768	Yin C,Gan L,Ng D,Zhou X,Xia K	Decreased panicle-derived indole-3-acetic acid reduces gibberellin A1 level in the uppermost internode, causing panicle enclosure in male sterile rice Zhenshan  97A.	J. Exp. Bot.	58	2441-9	2007		
31715	17545250	Saio T,Kumeta H,Ogura K,Yokochi M,Asayama M,Katoh S,Katoh E,Teshima K,Inagaki F	The cooperative role of OsCnfU-1A domain I and domain II in the iron sulphur cluster transfer process as revealed by NMR.	J. Biochem.	142	113-21	2007		
31716	17541409	Horie T,Costa A,Kim TH,Han MJ,Horie R,Leung HY,Miyao A,Hirochika H,An G,Schroeder JI	Rice OsHKT2;1 transporter mediates large Na+ influx component into K+-starved roots for growth.	EMBO J.	26	3003-14	2007	HKT1	OsHKT1, OsHKT2;1, HKT2;1, Ni (Nipponbare)-OsHKT1, Po (Pokkali)-HKT1, OsHKT1;1, HKT1;1
31717	17536181	Verma D,Singla-Pareek SL,Rajagopal D,Reddy MK,Sopory SK	Functional validation of a novel isoform of Na+/H+ antiporter from Pennisetum glaucum for enhancing salinity tolerance in rice.	J Biosci	32	621-8	2007		
31718	17516027	Fu XY,Zhang Z,Peng RH,Xiong AS,Liu JG,Wu LJ,Gao F,Zhu H,Guo ZK,Yao QH	Isolation and characterization of a novel cDNA encoding ERF/AP2-type transcription factor OsAP25 from Oryza sativa L.	Biotechnol. Lett.	29	1293-9	2007		
31719	17486123	Chen SY,Wang ZY,Cai XL	OsRRM, a Spen-like rice gene expressed specifically in the endosperm.	Cell Res	17	713-21	2007	_	OsRRM
31720	17485859	Nakamura Y,Kato T,Yamashino T,Murakami M,Mizuno T	Characterization of a set of phytochrome-interacting factor-like bHLH proteins in Oryza sativa.	Biosci. Biotechnol. Biochem.	71	1183-91	2007	PIL14,PIL16,TOC1,PIL12,PIL13,PIL15,PIL11	OsPIL14, OsbHLH104, bHLH104, OsPIF14, PIF14, OsPIF14alpha, OsPIF14beta,APG, OsPIL16, OsbHLH106,OsTOC1, OsPRR1, Os-PRR1, PRR1, OsRRA21, OsCCT07,OsPIL12, OsbHLH103, bHLH103,OsPIL1, OsPIL13, OsbHLH152, bHLH152, PIF7, OsPIF7, OsPIF4, PIF4, OsPIF1,OsPIL15, OsbHLH105, PIF3, OsPIF3,OsPIL11, OsbHLH102, bHLH102, PIF4, OsPIF4
31721	17470145	Jiang J,Li J,Xu Y,Han Y,Bai Y,Zhou G,Lou Y,Xu Z,Chong K	RNAi knockdown of Oryza sativa root meander curling gene led to altered root development and coiling which were mediated by jasmonic acid signalling in rice.	Plant Cell Environ.	30	690-9	2007	OPR1,RSOSPR10,RMC	OsOPR1, OsOPR2, OsOPR11, OsOPR06-6, OPDAR1, OsOPR, OPDAR,RSOsPR10, RsOsPR10a, OsPR10a, OsPR10alpha, OsPR10, PR10, OsBETV1, BETV1,OsRMC, OsRLK, OsDUF26, DUF26, OsCBMIP, CBMIP, NCS, OsNCS, OsCRK5, CRK5
31722	17464219	You MK,Oh SI,Ok SH,Cho SK,Shin HY,Jeung JU,Shin JS	Identification of putative MAPK kinases in Oryza minuta and O. sativa responsive  to biotic stresses.	Mol. Cells	23	108-14	2007		
31723	17464198	Hwang du H,Kim ST,Kim SG,Kang KY	Comprehensive analysis of the expression of twenty-seven beta-1, 3-glucanase genes in rice (Oryza sativa L.).	Mol. Cells	23	207-14	2007		
31724	17464192	Lee JR,Jung JH,Kang JS,Kim JC,Jung IJ,Seok MS,Kim JH,Kim WY,Kim MG,Kim JY,Lim CO,Lee KO,Lee SY	Molecular and functional characterization of monocot-specific Pex5p splicing variants, using OsPex5pL and OsPex5pS from rice (Oryza sativa).	Mol. Cells	23	161-9	2007		
31725	17452999	Liu HY,Yu X,Cui DY,Sun MH,Sun WN,Tang ZC,Kwak SS,Su WA	The role of water channel proteins and nitric oxide signaling in rice seed germination.	Cell Res	17	638-49	2007		
31726	17447911	Jouannic S,Collin M,Vidal B,Verdeil JL,Tregear JW	A class I KNOX gene from the palm species Elaeis guineensis (Arecaceae) is associated with meristem function and a distinct mode of leaf dissection.	New Phytol.	174	551-68	2007		
31727	17431550	Kumeta H,Ogura K,Asayama M,Katoh S,Katoh E,Teshima K,Inagaki F	The NMR structure of the domain II of a chloroplastic NifU-like protein OsNifU1A.	J Biomol NMR	38	161-4	2007		
31728	17253710	Kawahigashi H,Hirose S,Iwai T,Ohashi Y,Sakamoto W,Maekawa M,Ohkawa Y	Chemically induced expression of rice OSB2 under the control of the OsPR1.1 promoter confers increased anthocyanin accumulation in transgenic rice.	J. Agric. Food Chem.	55	1241-7	2007		
31729	17219102	Kim SH,Kim JY,Kim SJ,An KS,An G,Kim SR	Isolation of cold stress-responsive genes in the reproductive organs, and characterization of the OsLti6b gene from rice (Oryza sativa L.).	Plant Cell Rep.	26	1097-110	2007	LTI6B	OsLti6b, Lti6b, OsLTI6B, OsRCI2-6
31730	17172048	Chen C,Xiao H,Zhang W,Wang A,Xia Z,Li X,Zhai W,Cheng Z,Zhu L	Adapting rice anther culture to gene transformation and RNA interference.	Sci. China, C, Life Sciences	49	414-28	2006		
31731	17172047	Ming F,Lu Q,Wang W,Zhang S,Guo B,Shen D	Cloning, expression and function of phosphate transporter encoded gene in Oryza sativa L.	Sci. China, C, Life Sciences	49	409-13	2006	PT6	OsPT6, PHT1-6, OsPht1;6, OsLPT6:1, OsLPT1, OsPT6:1, Pht1;6, LPT6:1, LPT1, PT6:1
31732	17091197	Hu TZ,Cao KM,Xia M,Wang XP	Functional characterization of a putative nitrate transporter gene promoter from  rice.	Acta Biochim. Biophys. Sin. (Shanghai)	38	795-802	2006		
31733	17080612	Tanaka N,Matsuoka M,Kitano H,Asano T,Kaku H,Komatsu S	gid1, a gibberellin-insensitive dwarf mutant, shows altered regulation of probenazole-inducible protein (PBZ1) in response to cold stress and pathogen attack.	Plant Cell Environ.	29	619-31	2006	TPI,OLP1,CPS4,CDPK1,GID1,SPK,CPS2,CDPK24,CDPK7,CPS1,PR10B,PR10A	tpi*, tips, TI, OsTPI1, TPI1, OsTPI1.1, OsTPI1.2 ,PR5, OsOLP1,OsCPS4, CYC1, OsCYC1, OsCyc1, cpsl3, OsCPSL3, OsCPSsyn, OsCyc1/OsCPS4, OsTPS15, Os-CPS4, TPS11, OsTPS11,OsCDPK1, OsCPK1, CPK1,gid1, OsGID1, Thl, Os GID1,CDPK 1, CDPK1, CDPK23, OsCDPK23, OsCPK23, CPK23, OsSPK,OsCPS2, cps2, OsCPS2ent, CYC2, OsCyc2, OsCYC2, OsCPSL1, cpsl1, OsCyc2/OsCPS2, OsTPS7, Os-CPS2, TPS13, OsTPS13,OsCDPK24, OsCPK24, OsCDPK14, CPK24,OsCDPK7, OsCPK7, CDPK1, OsCDPK11, CDPK12, OsCDPK13,OsCPS1, OsCPS1ent, OsCPS, Os CPS1, OsTPS4, TPS4, TPS29, OsTPS29, OsCPS1-L, OsCPS1-S,RPR10b, PR-10b, PR10b, PBZ1, PBZ-1, OsPBZc, OsPR10b, BetV, OsBetV,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 
31734	17016673	Yu S,Zhang X,Guan Q,Takano T,Liu S	Expression of a carbonic anhydrase gene is induced by environmental stresses in rice (Oryza sativa L.).	Biotechnol. Lett.	29	89-94	2007		
31735	16957091	Sasaki C,Varum KM,Itoh Y,Tamoi M,Fukamizo T	Rice chitinases: sugar recognition specificities of the individual subsites.	Glycobiology	16	1242-50	2006		
31736	16875320	Ning J,Yuan B,Xie KB,Hu HH,Wu CQ,Xiong LZ	Isolation and identification of SA and JA inducible protein kinase gene OsSJMK1 in rice.	Acta genetica Sinica	33	625-33	2006		
31737	16807830	Werner T,Kollmer I,Bartrina I,Holst K,Schmulling T	New insights into the biology of cytokinin degradation.	Plant Biol (Stuttg)	8	371-81	2006		
31738	16807829	Nick P	Noise yields order--auxin, actin, and polar patterning.	Plant Biol (Stuttg)	8	360-70	2006		
31739	16775631	Yu X,Peng YH,Zhang MH,Shao YJ,Su WA,Tang ZC	Water relations and an expression analysis of plasma membrane intrinsic proteins  in sensitive and tolerant rice during chilling and recovery.	Cell Res	16	599-608	2006	PIP1A,PIP2;8,PIP2;2,PIP2;5,PIP2;4,PIP2;3,PIP2;6,PIP1;3,PIP2;7,PIP1;2,PIP2A	OsPIP1a, OsPIP1;1, PIP1a, RWC-1, PIP1-1, RWC1, OsPIP1-1, PIP1;1, PIP1-5,OsPIP2;8, PIP2.8, PIP2-8, OsPIP2-7,OsPIP2;2, PIP2-2, OsPIP2-3,OsPIP2;5, PIP2-5,OsPIP2;4, PIP2.4, PIP2-4, OsPIP2-4,OsPIP2;3, PIP2-3, OsPIP2-2,OsPIP2;6, PIP2-6, OsPIP2-6, PIP2-5, OsPIP2-5,OsPIP1;3. PIP1.3, PIP1-3, RWC3, RWC-3, OsPIP1-3,OsPIP2;7, PIP2.7, PIP2-7, OsPIP2-6, OsPIP-3A, PIP-3A,OsPIP1;2, PIP1-2, OsPIP1-2,OsPIP2a, PIP2-1, PIP2a, PIP2.1, OsPIP2;1, PIP2;1, OsPIP2-1
31740	16773042	Lian HL,Yu X,Lane D,Sun WN,Tang ZC,Su WA	Upland rice and lowland rice exhibited different PIP expression under water deficit and ABA treatment.	Cell Res	16	651-60	2006	PIP1A,PIP2;4,PIP2;8,PIP2;6,PIP2;2,PIP2A,PIP1;3,PIP2;5,PIP2;3,PIP1;2,PIP2;7	OsPIP1a, OsPIP1;1, PIP1a, RWC-1, PIP1-1, RWC1, OsPIP1-1, PIP1;1, PIP1-5,OsPIP2;4, PIP2.4, PIP2-4, OsPIP2-4,OsPIP2;8, PIP2.8, PIP2-8, OsPIP2-7,OsPIP2;6, PIP2-6, OsPIP2-6, PIP2-5, OsPIP2-5,OsPIP2;2, PIP2-2, OsPIP2-3,OsPIP2a, PIP2-1, PIP2a, PIP2.1, OsPIP2;1, PIP2;1, OsPIP2-1,OsPIP1;3. PIP1.3, PIP1-3, RWC3, RWC-3, OsPIP1-3,OsPIP2;5, PIP2-5,OsPIP2;3, PIP2-3, OsPIP2-2,OsPIP1;2, PIP1-2, OsPIP1-2,OsPIP2;7, PIP2.7, PIP2-7, OsPIP2-6, OsPIP-3A, PIP-3A
31741	16761097	Luo M,Gu SH,Zhao SH,Zhang F,Wu NH	Rice GTPase OsRacB: potential accessory factor in plant salt-stress signaling.	Acta Biochim. Biophys. Sin. (Shanghai)	38	393-402	2006		
31742	16730464	Mamun EA,Alfred S,Cantrill LC,Overall RL,Sutton BG	Effects of chilling on male gametophyte development in rice.	Cell Biol Int	30	583-91	2006	CIN3,MST8	OSINV4, OsINV4, INV4, OsCIN3,OsMST8, OSMST8, OsSTP8, STP8
31743	16704112	Shen S,Wang Z,Shan X,Wang H,Li L,Lin X,Long L,Weng K,Liu B,Zou G	Alterations in DNA methylation and genome structure in two rice mutant lines induced by high pressure.	Sci. China, C, Life Sciences	49	97-104	2006		
31744	16699542	Ma H,Lou Y,Lin WH,Xue HW	MORN motifs in plant PIPKs are involved in the regulation of subcellular localization and phospholipid binding.	Cell Res	16	466-78	2006		
31745	16689935	Rajanikant C,Kumbhakar M,Pal H,Rao BJ,Sainis JK	DNA strand exchange activity of rice recombinase OsDmc1 monitored by fluorescence resonance energy transfer and the role of ATP hydrolysis.	FEBS J.	273	1497-506	2006		
31746	16639503	Guglielminetti L,Morita A,Yamaguchi J,Loreti E,Perata P,Alpi A	Differential expression of two fructokinases in Oryza sativa seedlings grown under aerobic and anaerobic conditions.	J. Plant Res.	119	351-6	2006	FKI,FKII	OsFKI, OsFK2, FK2,OsFKII, OsFK1, FK1, FRK-2, OsFRK-2, FRK2, OsFRK2
31747	16556979	Yamaguchi T,Hayashi T,Nakayama K,Koike S	Expression analysis of genes for callose synthases and Rho-type small GTP-binding proteins that are related to callose synthesis in rice anther.	Biosci. Biotechnol. Biochem.	70	639-45	2006	GSLm,RAC4,GSL7,RAC2,GSL4,RAC3,GSL6,RAC7,GSL10,RAC6,GSL5,RAC5,GSL9,GSL8,GSL1,GSL3,GSL2,RAC1	orf241, OsGSLm, OsGSLmt, GSLmt,OsRAC4, OsRac4, ROP4, OsRop4,OsGSL7,OsRAC2, OsRac2,OsGSL4, CalS7, OsCalS7,OsRac3,OsGSL6, CalS3, OsCalS3,OSRAC7, OsRac7, ROP5, OsRop5,OsGSL10, CalS3-2, OsCalS3-2,OsRacB, RacB, OsRac6,OsGSL5, OsSTA170, CalS5, OsCalS5,Osrac5, OsRac5, RACD, OsRacD, OsRACD,OsGSL9, CalS7-2, OsCalS7-2,OsGSL8, OsGSC, GSC, CRR1, OsCRR1, CalS9, OsCalS9,OsGSL1, CalS10, OsCalS10,OsGSL3, CalS12, OsCalS12,OsGSL2, CalS12-2, OsCalS12-2,OsRAC1, OsRac1, Os Rac1, Rac1, Os-Rac1
31748	16548068	Dai S,Li L,Chen T,Chong K,Xue Y,Wang T	Proteomic analyses of Oryza sativa mature pollen reveal novel proteins associated with pollen germination and tube growth.	Proteomics	6	2504-29	2006		
31749	16541126	Guo L,Wang ZY,Lin H,Cui WE,Chen J,Liu M,Chen ZL,Qu LJ,Gu H	Expression and functional analysis of the rice plasma-membrane intrinsic protein  gene family.	Cell Res	16	277-86	2006	PIP2;2,PIP2;4,PIP1A,PIP2;6,PIP1;3,PIP2A,PIP1;2,PIP2;7,PIP2;3	OsPIP2;2, PIP2-2, OsPIP2-3,OsPIP2;4, PIP2.4, PIP2-4, OsPIP2-4,OsPIP1a, OsPIP1;1, PIP1a, RWC-1, PIP1-1, RWC1, OsPIP1-1, PIP1;1, PIP1-5,OsPIP2;6, PIP2-6, OsPIP2-6, PIP2-5, OsPIP2-5,OsPIP1;3. PIP1.3, PIP1-3, RWC3, RWC-3, OsPIP1-3,OsPIP2a, PIP2-1, PIP2a, PIP2.1, OsPIP2;1, PIP2;1, OsPIP2-1,OsPIP1;2, PIP1-2, OsPIP1-2,OsPIP2;7, PIP2.7, PIP2-7, OsPIP2-6, OsPIP-3A, PIP-3A,OsPIP2;3, PIP2-3, OsPIP2-2
31750	16477129	Jia QJ,Qi XP,Wu P	[A preliminary analysis of the function of the OsRab5a gene in rice (Oryza sativa L.)]	Zhi Wu Sheng Li Yu Fen Zi Sheng Wu Xue Xue Bao	32	37-44	2006		
31751	16472405	Jain M,Tyagi AK,Khurana JP	Molecular characterization and differential expression of cytokinin-responsive type-A response regulators in rice (Oryza sativa).	BMC Plant Biol	6	1	2006	RR8,RR3,RR6,RR5,RR4,RR7,RR10,RR9,RR2,RR1	rr8, OsRR8, Rra13, OsRR15, RR15, OsRRA13,OSRR3, OsRR3, rr3, Rra7, OsRRA7,OsRR6, rr6, Rra6, OsRRA6,rr5, OsRR5, Rra4, OsRRA4,rr4, OsRR4, Rra3, OsRRA3,rr7, OsRR7, Rra5, OsRRA5,OsRR10, Rra2, OsRRA2, RR2,OsRR9, Rra1, OsRRA1, OsRR10, RR10,rr2, Osrr2, OsRR2, Rra10, OsRRA10,rr1, OsRR1, Rra9, OsRRA9
31752	16452316	Takashima S,Abe T,Yoshida S,Kawahigashi H,Saito T,Tsuji S,Tsujimoto M	Analysis of sialyltransferase-like proteins from Oryza sativa.	J. Biochem.	139	279-87	2006	STLP1,STLP3,STLP2	OsSTLP1,OsSTLP3,OsSTLP2
31753	16428324	Ishibashi T,Kimura S,Sakaguchi K	A higher plant has three different types of RPA heterotrimeric complex.	J. Biochem.	139	99-104	2006	RPA1A,RPA1	OsRPA70a, OsRPA1a, RPA1a,OsRPA1, OsRPA70b, RPA70b
31754	16397782	Park JI,Hakozaki H,Endo M,Takada Y,Ito H,Uchida M,Okabe T,Watanabe M	Molecular characterization of mature pollen-specific genes encoding novel small cysteine-rich proteins in rice (Oryza sativa L.).	Plant Cell Rep.	25	466-74	2006		
31755	16290186	Yang Y,Yu X,Wu P	Comparison and evolution analysis of two rice subspecies LATERAL ORGAN BOUNDARIES domain gene family and their evolutionary characterization from Arabidopsis.	Mol. Phylogenet. Evol.	39	248-62	2006		
31756	16263700	Imin N,Kerim T,Weinman JJ,Rolfe BG	Low temperature treatment at the young microspore stage induces protein changes in rice anthers.	Mol Cell Proteomics	5	274-92	2006	C6,_,_,_,_,GDCH,MDHAR4,_,_,_,_,_,_,CRO1,RCS3	Osc6, Osg6B, OsG6B, OsLTPG25, OsLTPg25, OsLtpVII.1, Os C6,,,,OsOMT26, ROMT-15, ROMT15, COA20, OsCCoAOMT, CCoAOMT,OsGDCH,OsMDAR4, MDAR4, OsMDHAR4,OsLTP1.1, T42, OsLtp1.1, LTP1.1,,OsCIA,OsPBF1,coxVb, COX5b,,OsCRO1, CRT, CRT-1, OsCRT-1, OsCRT1, CRT1,rcs3, OsRCS3, OsOASTL-A1, OASTL-A1
31757	16200395	Jain M,Kaur N,Garg R,Thakur JK,Tyagi AK,Khurana JP	Structure and expression analysis of early auxin-responsive Aux/IAA gene family in rice (Oryza sativa).	Funct Integr Genomics	6	47-59	2006	IAA11,IAA22,IAA25,IAA7,IAA18,IAA9,IAA15,IAA19,IAA3,IAA20,IAA21,IAA12,IAA31,IAA4,IAA17,IAA1,IAA10,IAA6,IAA16,IAA5,IAA2,IAA8,IAA24,IAA14,IAA13,IAA23,IAA29,IAA28,IAA30,IAA26,IAA27	OsIAA11,OsIAA22,OsIAA25,OsIAA7, DLN51, OsDLN51,OsIAA18,OsIAA9, OsIAA2,OsIAA15,OsIAA19,OsIAA3,OsIAA20,OsIAA21,OsIAA12,OsIAA3, IAA3, OsIAA31, OsIAA30, IAA30,OsIAA4, IAA20, OsIAA20,OsIAA17, OsIAA17q5, IAA17q5,OsIAA1, OsIAA4,OsIAA10, OsIAA5, DLN71, OsDLN71,OsIAA6,OsIAA16, DLN134, OsDLN134,OsIAA5,OsIAA2,OsIAA8,OsIAA24,OsIAA14, AUX/IAA14, OsAUX/IAA14 ,OsIAA13, OsIAA1, OsiIAA1,OsIAA23,OsIAA29, OsEnS-141,OsIAA28,OsIAA30,OsIAA26,OsIAA27
31760	16200411	Laura Morello, Mauro Bardini, Mauro Cricr?, Francesco Sala and Diego Breviario	Functional analysis of DNA sequences controlling the expression of the rice OsCDPK2 gene	Planta.	 223, no. 3	479-91	2006	CDPK19	OsCDPK19, OsCPK19, OsCDPK2, CPK2, CDPK2
31763		Mi-Jeong Jeong, Seong-Kon Lee, Beom-Gi Kim, Tack-Ryoun Kwon, Woo-Suk Cho, Young-Taik Park, Jin-Ohk Lee, Hawk-Bin Kwon, Myong-Ok Byun and Soo-Chul Park	A rice (Oryza sativa L.) MAP kinase gene, OsMAPK44, is involved in response to abiotic stresses [electronic resource].	Plant cell, tissue and organ culture.	 85, no. 2	151-160	2006		
31766		Baozhen Li, Weijie Xin, Shubin Sun, Qirong Shen and Guohua Xu	Physiological and Molecular Responses of Nitrogen-starved Rice Plants to Re-supply of Different Nitrogen Sources [electronic resource].	Plant and soil.	 287 (1-2)	145-159	2006		
31767		Tomoaki Sakamoto and Makoto Matsuoka	Characterization of CONSTITUTIVE PHOTOMORPHOGENESIS AND DWARFISM Homologs in Rice (Oryza sativa L.) [electronic resource].	Journal of plant growth regulation.	 25, no. 3	245	2006	CPD2,CPD1	OsCPD2, CYP90A4, CYP90A4/OsCPD2,OsCPD1, CYP90A3, CYP90A3/OsCPD1, CPD, OsCPD2, CPD2
31769		Lifeng Zhao, Shengbao Xu, Tuanyao Chai and Tai Wang 	OsAP2-1, an AP2-like gene from Oryza sativa, is required for flower development and male fertility [electronic resource].	Sexual Plant Reproduction	 19i4j	197-206	2006		
31770	17309686	Yuexing Yuan, Sihui Zhong, Qun Li, Zengrong Zhu, Yonggen Lou, Linyou Wang, Jianjun Wang, Muyang Wang, Qiaoli Li, Donglei Yang  and Zuhua He 	 Functional analysis of rice NPR1-like genes reveals that OsNPR1/NH1 is the rice orthologue conferring disease resistance with enhanced herbivore susceptibility.	Plant Biotechnol J.	5	313-324	2007	NH1,NH3,NPR4,BOP1,NH2	OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2, DLN5, OsDLN5,  OsBTBA1, BTBA1,OsNPR3, OsNH3, NPR3, OsNPR3.1, OsNPR3.2, OsNPR3.3 ,  OsBTBA4, BTBA4, OsNPR4, NPR4,OsNPR4,OsNPR5, NPR5, NH4, OsNH4, OsBOP1,  OsBTBA3, BTBA3,OsNH2, OsNPR2, NPR2, OsNPR2/NH2, DLN21, OsDLN21, PR2, OsNPR1, NPR1,  OsBTBA2, BTBA2, OsNPR3, NPR3
31771	17111096	Jie Chen, Weidong Zhang, Fengming Song and Zhong Zheng	 Phospholipase C/diacylglycerol kinase-mediated signalling is required for benzothiadiazole-induced oxidative burst and hypersensitive cell death in rice suspension-cultured cells.	Protoplasma.	230	13-21	2007		
31775		Jin Kong, Zhong Li, Yan-Ping Tan, Cui-Xiang Wan, Shao-Qing Li, Ying-Guo Zhu	 Different gene expression patterns of sucrose-starch metabolism during pollen maturation in cytoplasmic male-sterile and male-fertile lines of rice.	Physiologia plantarum.	130	136-147	2007		
31776	17541632	Liu W,Fu Y,Hu G,Si H,Zhu L,Wu C,Sun Z	Identification and fine mapping of a thermo-sensitive chlorophyll deficient mutant in rice (Oryza sativa L.).	Planta.	226	785-95	2007		
31778		Y. Chen and D.-Q. Xu	 Changes in leaf photosynthesis of transgenic rice with silenced OsBP-73 gene.	Photosynthetica.	45	419-425	2007		
31781		Yibing Hu, Kang Chong and Tai Wang	OsRAF is an ethylene responsive and root abundant factor gene of rice.	Plant growth regulation.	54	55-61	2008		
31782	17624547	Sung Han Park, Chul Min Kim, Byoung Il Je, Su Hyun Park, Soon Ju Park, Hai Long Piao, Yuan-hu Xuan, Mi Sook Choe, Kouji Satoh, Shoshi Kikuchi, Kon Ho Lee, Young Soon Cha, Byung Ohg Ahn, Hyeon So Ji, Doh Won Yun, Myung Chul Lee, Seok-cheol Suh, Moo Young Eun and Chang-deok Han	A Ds-insertion mutant of OSH6 (Oryza sativa Homeobox 6) exhibits outgrowth of vestigial leaf-like structures, bracts, in rice.	Planta.	227	1-12	2007		
31784	17938955	Tani T,Sobajima H,Okada K,Chujo T,Arimura S,Tsutsumi N,Nishimura M,Seto H,Nojiri H,Yamane H	 Identification of the OsOPR7 gene encoding 12-oxophytodienoate reductase involved in the biosynthesis of jasmonic acid in rice.	Planta.	227	517-26	2008	OPR2,OPR6,OPR5,OG1,OPR1,OPR8,OPR4,OPR9,OPR10,OPR3	OsOPR2, OsOPR06-5,OsOPR6, OsOPR4, OsOPR06-1,OsOPR5, OsOPR6, OsOPR06-2, OPR4,OsOPR7, OPR7, OsOPR13, OsOPR3, OsOPR5, OsOPR9, OsOPR08-1,  OPR13, OPR3, OPR5, OPR9, OPR08-1, OsOPR8, OPR8,OsOPR1, OsOPR2, OsOPR11, OsOPR06-6, OPDAR1, OsOPR, OPDAR,OsOPR8, OsOPR7, OsOPR02-1,OsOPR4, OsOPR10, OsOPR06-3, OsOPR7,OsOPR9, OsOPR01-2, OPR2,OsOPR10, OsOPR12, OsOPR01-1,OsOPR3, OsOPR06-4
31785		Yukihiro Ito and Nori Kurata	Disruption of KNOX gene suppression in leaf by introducing its cDNA in rice	Plant Sci.	174(3)	357-365	2008		
31786		YanWen Feng, , Setsuko Komatsu, Toshiko Furukawa, Tomokazu Koshiba and Yoshihisa Kohno	Proteome analysis of proteins responsive to ambient and elevated ozone in rice seedlings	Agriculture, ecosystems & environment.	125	255-265	2008		
31787	18066586	Lee MO,Cho K,Kim SH,Jeong SH,Kim JA,Jung YH,Shim J,Shibato J,Rakwal R,Tamogami S,Kubo A,Agrawal GK,Jwa NS	Novel rice OsSIPK is a multiple stress responsive MAPK family member showing rhythmic expression at mRNA level.	Planta.	227	981-90	2008		
31788		Zhengge Zhu and Ray Wu	Regeneration of transgenic rice plants using high salt for selection without the need for antibiotics or herbicides	Plant Sci.	174(5)	519-523	2008		
31790		W. R. Chen, Y. Feng and Y. E. Chao 	Genomic analysis and expression pattern of OsZIP1, OsZIP3, and OsZIP4 in two rice (Oryza sativa L.) genotypes with different zinc efficiency	Russian Journal of Plant Physiology	55i3j	400-409	2008		
31791		Guillaume Rzewuski and Margret Sauter	Ethylene biosynthesis and signaling in rice	Plant Sci.	175(1-2)	32-42	2008		
31793		Wei Li, Cailin Lei, Zhijun Cheng, Yulin Jia, Dongyi Huang, Jiulin Wang, Jiankang Wang, Xin Zhang, Ning Su, Xiuping Guo, Huqu Zhaiand Jianmin Wan	Identification of SSR markers for a broad-spectrum blast resistance gene Pi20(t) for marker-assisted breeding	Molecular Breeding	22	141-149	2008	PI20	Pi20, Pi20(t)
31794		Shanyue Zhou, Wensheng Zhao, Hui Li, Zejian Guo and You-Liang Peng	Characterization of a Novel RING Finger Gene OsRFP1, which is Induced by Ethylene, Salicylic Acid and Blast Fungus Infection in Rice.	J. Phytopathology	156	396-402	2008	RFP1	OsRZFP34, OsRFP1, RZFP34, UCIP18, OsUCIP18,  OsRING160, RING160
31795		Hu, T. Zh. 	OsLEA3, a late embryogenesis abundant protein gene from rice, confers tolerance to water deficit and salt stress to transgenic rice	Russian Journal of Plant Physiology	55(4)	530-537	2008		
31796	18510577	Ashok K. Shrawat, Rebecka T. Carroll, Mary DePauw, Gregory J. Taylor and Allen G. Good	Genetic engineering of improved nitrogen use efficiency in rice by the tissue-specific expression of alanine aminotransferase.	Plant Biotechnol J.	6	722-732	2008	ALDH7	OsALDH7, osaldh7, LDH, ALDH7B7, OsALDH7B6, ALDH7B6, OsAnt1, Ant1
31797	18425430	Tingting Ning, Tingting Xie, Qingchuan Qiu, Wei Yang, Shunquan Zhou, Limei Zhou, Congyi Zheng, Yingguo Zhu and Daichang Yang 	Oral administration of recombinant human granulocyte-macrophage colony stimulating factor expressed in rice endosperm can increase leukocytes in mice.	Biotechnology letters.	30	1679-86	2008		
31798	18563580	Hyoun-Mi Seo, Yunhui Jung, Songyi Song, Yunhye Kim, Tackmin Kwon, Doh-Hoon Kim, Soon-Jae Jeung, Young-Byung Yi, Gihwan Yi, Min-Hee Nam and Jaesung Nam 	Increased expression of OsPT1, a high-affinity phosphate transporter, enhances phosphate acquisition in rice.	Biotechnology letters.	30	1833-8	2008		
31799	18686304	Sun Tae Kim, Sun Young Kang, Yiming Wang, Sang Gon Kim, Du Hyeon Hwang and Kyu Young Kang	Analysis of embryonic proteome modulation by GA and ABA from germinating rice seeds.	Proteomics	8	3577-87	2008		
31800		Scott, Robert C.	Imazethapyr Use with and without Clomazone for Weed Control in Furrow-Irrigated, Imidazolinone-Tolerant Rice.	Weed technology.	22	217-221	2008		
31801		Fu-Qiao Xua, Xiao-Rong Lia and Yong-Ling Ruan	RNAi-mediated suppression of hexokinase gene OsHXK10 in rice leads to non-dehiscent anther and reduction of pollen germination.	Plant Sci.	175(5)	674-684	2008		
31802		Hai-Jun Zhao, Qing-Long Liu, Xue-Liang Ren, Dian-Xing Wu and Qing-Yao Shu	Gene identification and allele-specific marker development for two allelic low phytic acid mutations in rice (Oryza sativa L.).	Molecular Breeding	22	603-612	2008		
31804	18437520	Xianquan Bai, Qiuyun Wang and Chengcai Chu	Excision of a selective marker in transgenic rice using a novel Cre/loxP system controlled by a floral specific promoter.	Transgenic Res	17	1035-43	2008		
31805		Bing Song Zheng, Ling Yang, Chuan Zao Mao, You Jun Huang and Ping Wu	Mapping QTLs for morphological traits under two water supply conditions at the young seedling stage in rice.	Plant Sci.	175(6)	767-776	2008		
31806		G. H. Zhu, J. J. Zhang, J. S. Chen and X. X. Peng	Characterization of a rice metallothionein type 3 gene with different expression profiles under various nitrogen forms.	Biologia plantarum.	52(4)	668-673	2008		
31807		Li-Hong Wang, Gui-Lan Duan, Paul N. Williams and Yong-Guan Zhu	Influences of phosphorus starvation on OsACR2.1 expression and arsenic metabolism in rice seedlings.	Plant and soil.	313(1-2)	129-139	2008		
31808	18545264	Yang XC, Hwa CM.	Genetic and physiological characterization of the OsCem mutant in rice: formation of connected embryos with multiple plumules or multiple radicles.	Heredity	101	239-46.	2008		
31809		Yuping Qiu and Diqiu Yu	Over-expression of the stress-induced OsWRKY45 enhances disease resistance and drought tolerance in Arabidopsis.	Environmental and experimental botany.	65	35-47	2008		
31810		Weihua Qiao, Shouhua Xiao, Liang Yu and Liu-Min Fan	Expression of a rice gene OsNOA1 re-establishes nitric oxide synthesis and stress-related gene expression for salt tolerance in Arabidopsis nitric oxide-associated 1 mutant Atnoa1.	Environmental and experimental botany.	65	90-98	2008		
31811	17111113	Zhu QH, Dennis ES, Upadhyaya NM.	Compact shoot and leafy head 1, a mutation affects leaf initiation and developmental transition in rice (Oryza sativa L).	Plant Cell Rep.	26(4)	421-7	2007	CSL1	csl1
31812	19103426	Jiang L, Guo L, Jiang H, Zeng D, Hu J, Wu L, Liu J, Gao Z, Qian Q.	Genetic analysis and fine-mapping of a dwarfing with withered leaf-tip mutant in rice.	J Genet Genomics	35(12)	715-21	2008	DWL1	
31813	19422603	Heuer S,Lu X,Chin JH,Tanaka JP,Kanamori H,Matsumoto T,De Leon T,Ulat VJ,Ismail AM,Yano M,Wissuwa M	Comparative sequence analyses of the major quantitative trait locus phosphorus uptake 1 (Pup1) reveal a complex genetic structure.	Plant Biotechnol J.	7	456-71	2009	PSTOL1,_,_,_,_,_,_,PUPK20-2	Pstol1, OsPSTOL1, OsPSTOL, PSTOL, Pstol1/OsPupK46-2, OsPupK46-2, Pup1, PHO,OsPupK04-1,OsPupK01,OsPupK53,OsPupK67,OsPupK05-1,OsPupK29-1,OsPupK20-2, PupK20-2, DIR55, OsDIR55, OsjDIR55
31814	19405033	Wei Z,Hu W,Lin Q,Cheng X,Tong M,Zhu L,Chen R,He G	Understanding rice plant resistance to the Brown Planthopper (Nilaparvata lugens): a proteomic approach.	Proteomics	9	2798-808	2009		
31815	19210638	Iwamoto M,Higo K,Takano M	Circadian clock- and phytochrome-regulated Dof-like gene, Rdd1, is associated with grain size in rice.	Plant Cell Environ.	32	592-603	2009	RPBF,RDD3,RDD2,RDD1,RDD4	OsDof3, OsDOF3, OsEnS-34, OsDof10, Dof10, OsDof-10, OsDOF1, DOF1, DOF3, OsRPBF, OsDOF7,OsDof26, Dof26, OsDof-26, OsDof27, Dof27,OsDof23, Dof23, OsDof-23, OsDof1, OsCDF3, CDF3, OsDof24, Dof24,OsDof2, OsDof9, Dof9, OsDof-9, DLN64, OsDLN64, OsDof8, Dof8,OsDof12, Dof12, OsDof-12, OsCDF1, OsCDF1/OsDOF12, OsDOF12, CDF1, DOF12, OsDof11, Dof11
31816	19203276	Suh JP,Roh JH,Cho YC,Han SS,Kim YG,Jena KK	The pi40 gene for durable resistance to rice blast and molecular analysis of pi40-advanced backcross breeding lines.	Phytopathology	99	243-50	2009	PI9,PI40	Pi9(t), Pi9(t)*, Pi9, Pi-9(t),Pi40(t), Pi40, pi40, Pi-40(t), Pi-40
31817	19161350	Tian D,Yin Z	Constitutive heterologous expression of avrXa27 in rice containing the R gene Xa27 confers enhanced resistance to compatible Xanthomonas oryzae strains.	Mol. Plant Pathol.	10	29-39	2009		
31818	19159310	Lysoe E,Bone KR,Klemsdal SS	Real-time quantitative expression studies of the zearalenone biosynthetic gene cluster in Fusarium graminearum.	Phytopathology	99	176-84	2009		
31819	19001425	Ismail AM,Ella ES,Vergara GV,Mackill DJ	Mechanisms associated with tolerance to flooding during germination and early seedling growth in rice (Oryza sativa).	Ann. Bot.	103	197-209	2009		
31820	18974101	Septiningsih EM,Pamplona AM,Sanchez DL,Neeraja CN,Vergara GV,Heuer S,Ismail AM,Mackill DJ	Development of submergence-tolerant rice cultivars: the Sub1 locus and beyond.	Ann. Bot.	103	151-60	2009		
31821	18930897	Zhang XQ,Zou JS,Zhu HT,Li XY,Zeng RZ	[Genetic analysis and gene mapping of an early flowering and multi-ovary mutant in rice (Oryza sativa L.).]	Yi Chuan	30	1349-55	2008		
31822	18850055	Yao C,Ge L,Li W,Zhao B,Li C,Ruan K,Lin H,Jin Y	Expression and characterization of rice putative PAUSED gene.	Acta Biochim. Biophys. Sin. (Shanghai)	40	893-900	2008	PSD	OsPSD
31823	18831036	Suzuki R,Shindo H,Tase A,Kikuchi Y,Shimizu M,Yamazaki T	Solution structures and DNA binding properties of the N-terminal SAP domains of SUMO E3 ligases from Saccharomyces cerevisiae and Oryza sativa.	Proteins	75	336-47	2009	SIZ1	OsSIZ1, OsSIZ1.1, OsSIZ1.2, OsSIZ1.3, DLN131, OsDLN131, OsPHD23, PHD23
31824	18827181	Ueguchi-Tanaka M,Hirano K,Hasegawa Y,Kitano H,Matsuoka M	Release of the repressive activity of rice DELLA protein SLR1 by gibberellin does not require SLR1 degradation in the gid2 mutant.	Plant Cell	20	2437-46	2008	SLR1	slr1-1, slr1, slr, GAI, OsGAI, OsSLR1, Os SLR1, OsRGA1, OsGRAS-18, OsGRAS-18, GRAS-18, GRAS18, SLR-1
31825	18817453	Park CJ,Peng Y,Chen X,Dardick C,Ruan D,Bart R,Canlas PE,Ronald PC	Rice XB15, a protein phosphatase 2C, negatively regulates cell death and XA21-mediated innate immunity.	PLos Biol.	6	e231	2008	XB15,XA21	XB15, OsPP2C35, PP2C35, OsPP59, SIP35 ,Xa21*, Xa21, OsXA21
31826	18755262	Norton GJ,Aitkenhead MJ,Khowaja FS,Whalley WR,Price AH	A bioinformatic and transcriptomic approach to identifying positional candidate genes without fine mapping: an example using rice root-growth QTLs.	Genomics	92	344-52	2008	_,_,CCR15,CSLE2,_,_,_,_,_	OsDegp3, DEGP3, OsDeg9.1,UGT705A3, OsUGT705A3,OsCCR15, OsDFR8, DFR8,OsCslE2, OsCSLE2 ,,Vatp, OsSTA154,OMT8,,
31827	18723578	Nakashima A,Chen L,Thao NP,Fujiwara M,Wong HL,Kuwano M,Umemura K,Shirasu K,Kawasaki T,Shimamoto K	RACK1 functions in rice innate immunity by interacting with the Rac1 immune complex.	Plant Cell	20	2265-79	2008	PR10A,RACK1,RACK1B,RBOHB,SGT1,RAR1,RAC1	PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,RACK1A, RWD, OsWD40-21, OsRACK1, OsRACK1A,OsWD40-122, WD40-122, OsRACK1B,rbohB, OsrbohB, Os rbohB, OsRbohB, OsNox1, Nox1, Os-RbohB, RbohB, OsRboh1, Rboh1,OsSgt1, OsSGT1, Os SGT1,Os RAR1, OsRAR1,OsRAC1, OsRac1, Os Rac1, Rac1, Os-Rac1
31828	18713442	Zhu SQ,Zhao H,Liang JS,Ji BH,Jiao DM	Relationships between phosphatidylglycerol molecular species of thylakoid membrane lipids and sensitivities to chilling-induced photoinhibition in rice.	J. Integr. Plant Biol.	50	194-202	2008		
31829	18713364	Xu JD,Zhang QF,Zhang T,Zhang HY,Xu PZ,Wang XD,Wu XJ	Phenotypic characterization, genetic analysis and gene-mapping for a brittle mutant in rice.	J. Integr. Plant Biol.	50	319-28	2008		
31830	18618285	Jha S,Tank HG,Prasad BD,Chattoo BB	Expression of Dm-AMP1 in rice confers resistance to Magnaporthe oryzae and Rhizoctonia solani.	Transgenic Res	18	59-69	2009		
31831	18558385	Lu WH,Wang XZ,Zheng Q,Guan SH,Xin P,Sun YQ	Diversity and stability study on rice mutants induced in space environment.	Genomics Proteomics Bioinformatics	6	51-60	2008		
31832	18487614	Kimpara T,Aohara T,Soga K,Wakabayashi K,Hoson T,Tsumuraya Y,Kotake T	Beta-1,3:1,4-glucan synthase activity in rice seedlings under water.	Ann. Bot.	102	221-6	2008		
31833	18464639	Qiu L,Wang HB,Xiong J,Fang CX,Wu WX,He HB,Lin WX	[Regulation effect of exogenous salicylic acid on weed suppression and molecular  physiological characteristics of allelopathic rice]	Ying Yong Sheng Tai Xue Bao	19	330-6	2008		
31834	18461470	Wang X,Wang H,Li Y,Cao K,Ge X	A rice lipid transfer protein binds to plasma membrane proteinaceous sites.	Mol. Biol. Rep.	36	745-50	2009		
31835	18449577	Luo Q,Han WW,Zhou YH,Yao Y,Li ZS	The 3D structure of the defense-related rice protein Pir7b predicted by homology  modeling and ligand binding studies.	J Mol Model	14	559-69	2008		
31836	18430022	Jain M,Tyagi AK,Khurana JP	Genome-wide identification, classification, evolutionary expansion and expression analyses of homeobox genes in rice.	FEBS J.	275	2845-61	2008	OSH1,OSH3,OSKN2,KNAT7,OSH43,OSH15,HOS58,OSH6,OSH45,HOS59	OSKN1, Oskn1, OsKN1, OSH1/Oskn1, HB75,OsH3, H3, HOS13,OsKn2, OsH71, HOS9, OSH71, OSH71/Oskn2,HOS66, HB365, OsKNAT7,OsH43, H43,OSH15, OsH15, OSKN3, Oskn3, HOS3, D6, d6, OSH15/Oskn3, HB253, H15, OsKNOX3, KNOX3,,OsH6, HOS16,OSH42, OSH44, H45,
31837	18426477	Diedhiou CJ,Popova OV,Dietz KJ,Golldack D	The SUI-homologous translation initiation factor eIF-1 is involved in regulation  of ion homeostasis in rice.	Plant Biol (Stuttg)	10	298-309	2008		
31838	18407058	Guo J,Wu J,Ji Q,Wang C,Luo L,Yuan Y,Wang Y,Wang J	Genome-wide analysis of heat shock transcription factor families in rice and Arabidopsis.	J Genet Genomics	35	105-18	2008		
31839	18366162	Morrone D,Xu M,Fulton DB,Determan MK,Peters RJ	Increasing complexity of a diterpene synthase reaction with a single residue switch.	J Am Chem Soc	130	5400-1	2008		
31840	18349506	Zhao XH,Yang JX,Gao J,Zhou Q,Kuai BK	Analysis of probenazole-responsiveness of rice RPR1 upstream fragments.	Zhi Wu Sheng Li Yu Fen Zi Sheng Wu Xue Xue Bao	33	524-30	2007		
31841	18338860	Kim ST,Kim SG,Kang YH,Wang Y,Kim JY,Yi N,Kim JK,Rakwal R,Koh HJ,Kang KY	Proteomics analysis of rice lesion mimic mutant (spl1) reveals tightly localized  probenazole-induced protein (PBZ1) in cells undergoing programmed cell death.	J Proteome Res.	7	1750-60	2008		
31842	18315879	Ventelon-Debout M,Tranchant-Dubreuil C,Nguyen TT,Bangratz M,Sire C,Delseny M,Brugidou C	Rice yellow mottle virus stress responsive genes from susceptible and tolerant rice genotypes.	BMC Plant Biol	8	26	2008		
31843	18251929	Mattana M,Vannini C,Espen L,Bracale M,Genga A,Marsoni M,Iriti M,Bonazza V,Romagnoli F,Baldoni E,Coraggio I,Locatelli F	The rice Mybleu transcription factor increases tolerance to oxygen deprivation in Arabidopsis plants.	Physiol Plant	131	106-21	2007		
31844	18221561	Wang D,Guo Y,Wu C,Yang G,Li Y,Zheng C	Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice.	BMC Genomics.	9	44	2008	C3H15,C3H44,DOS,C3H45,C3H41,C3H16,C3H28,C3H65,C3H24,C3H21,C3H3,C3H34,C3H17,C3H40,C3H32,C3H7,C3H27,C3H14,C3H50,C3H13 ,C3H12,C3H37,EHD4, LIC,C3H33,C3H11,C3H10,C3H1,C3H19,C3H18,C3H25,C3H26,C3H30,C3H36,C3H39,C3H42,C3H43,C3H48,C3H49,C3H5,C3H51,C3H53,C3H55,C3H56,C3H57,C3H58,C3H59,C3H62,C3H63,C3H66,C3H6,C3H9,C3H8,C3H47,C3H67,C3H22,C3H29,C3H35,C3H60 ,C3H38  ,C3H54,C3H31,C3H4,C3H23	OsC3H15, OsRFPHC-3,  OsRING268, RING268,OsC3H44, OsKH21, KH21,OsDOS, OsC3H2, C3H2, OsTZF2, OsCCCH-Zn-4,OsC3H45, OsCPSF30-L4, CPSF30-L4,OsC3H41, MKRN, OsRING387, RING387, OsCPSF30-L3, CPSF30-L3,OsC3H16,OsC3H28, DLN112, DLN112a, DLN112b, OsDLN112, OsDLN112a, OsDLN112b,OsC3H65, DLN256, OsDLN256,OsC3H24, OsTZF3, TZF3, OsCCCH-Zn-8, CCCH-Zn-8,OsC3H21,OsC3H3,OsC3H34, DLN132, OsDLN132,OsC3H17, OsWD40-49 ,OsC3H40, UCIP14, OsUCIP14,OsC3H32,OsC3H7, DLN12, OsDLN12, OsCPSF30-L2, CPSF30-L2,OsC3H27,OsC3H14, OsKH9, KH9,OsC3H50, OsTZF6, OsCCCH-Zn-6, DLN188, OsDLN188,OsC3H13, BIP105, DLN42, DLN42a, DLN42b, OsDLN42, OsDLN42a, OsDLN42b,OsC3H12, OsZFP12, ZFP12,OsC3H37, OsTZF7, OsCCCH-Zn-1,OsC3H20, C3H20, Ehd4, DLN73, DLN73a, DLN73b, OsDLN73, OsDLN73a, OsDLN73b,OsC3H46, C3H46, OsLIC, OsFLA6, FLA6,OsC3H33, OsTZF5, TZF5, OsCCCH-Zn-5, CCCH-Zn-5,OsC3H11, DLN25, OsDLN25,OsC3H10, OsTZF8, OsCCCH-Zn-2, OsEnS-12,OsC3H1, OsEnS-1,OsC3H19,OsC3H18,OsC3H25,OsC3H26,OsC3H30,OsC3H36,OsC3H39,OsC3H42,OsC3H43,OsC3H48,OsC3H49,OsC3H5,OsC3H51,OsC3H53,OsC3H55,OsC3H56,OsC3H57,OsC3H58,OsC3H59,OsC3H62,OsC3H63,OsC3H66,OsC3H6,OsC3H9,OsC3H8,OsC3H47, OsCCCH-Zn-10,OsC3H67, OsTZF4, OsCCCH-Zn-7,OsC3H22,OsC3H29, OsCCCH-Zn-9,OsC3H35, OsTZF1, OsCCCH-Zn-3,OsC3H60, U2AF35a, U2AF35A, OsU2AF35a,OsC3H38, U2AF35B, OsU2AF35b,OsC3H54,OsC3H31, OsKH17, KH17,OsC3H4, OsCPSF30-L1, CPSF30-L1,OsC3H23
31845	18208628	Tong JP,Liu XJ,Zhang SY,Li SQ,Peng XJ,Yang J,Zhu YG	Identification, genetic characterization, GA response and molecular mapping of Sdt97: a dominant mutant gene conferring semi-dwarfism in rice (Oryza sativa L.).	Genet. Res.	89	221-30	2007	_	Sdt97 
31846	18089549	Tanaka T,Antonio BA,Kikuchi S,Matsumoto T,Nagamura Y,Numa H,Sakai H,Wu J,Itoh T,Sasaki T,Aono R,Fujii Y,Habara T,Harada E,Kanno M,Kawahara Y,Kawashima H,Kubooka H,Matsuya A,Nakaoka H,Saichi N,Sanbonmatsu R,Sato Y,Shinso Y,Suzuki M,Takeda J,Tanino M,Todokoro F,Yamaguchi K,Yamamoto N,Yamasaki C,Imanishi T,Okido T,Tada M,Ikeo K,Tateno Y,Gojobori T,Lin YC,Wei FJ,Hsing YI,Zhao Q,Han B,Kramer MR,McCombie RW,Lonsdale D,O'Donovan CC,Whitfield EJ,Apweiler R,Koyanagi KO,Khurana JP,Raghuvanshi S,Singh NK,Tyagi AK,Haberer G,Fujisawa M,Hosokawa S,Ito Y,Ikawa H,Shibata M,Yamamoto M,Bruskiewich RM,Hoen DR,Bureau TE,Namiki N,Ohyanagi H,Sakai Y,Nobushima S,Sakata K,Barrero RA,Sato Y,Souvorov A,Smith-White B,Tatusova T,An S,An G,OOta S,Fuks G,Fuks G,Messing J,Christie KR,Lieberherr D,Kim H,Zuccolo A,Wing RA,Nobuta K,Green PJ,Lu C,Meyers BC,Chaparro C,Piegu B,Panaud O,Echeverria M	The Rice Annotation Project Database (RAP-DB): 2008 update.	Nucleic Acids Res.	36	D1028-33	2008		
31847	18070109	Liu Q	Identification of rice TUBBY-like genes and their evolution.	FEBS J.	275	163-71	2008		
31848	17988855	Sang T,Ge S	Genetics and phylogenetics of rice domestication.	Curr Opin Genet Dev	17	533-8	2007		
31849	17907810	Caicedo AL,Williamson SH,Hernandez RD,Boyko A,Fledel-Alon A,York TL,Polato NR,Olsen KM,Nielsen R,McCouch SR,Bustamante CD,Purugganan MD	Genome-wide patterns of nucleotide polymorphism in domesticated rice.	PLoS Genet.	3	1745-56	2007		
31850	17891549	Kuraparthy V,Sood S,Gill BS	Genomic targeting and mapping of tiller inhibition gene (tin3) of wheat using ESTs and synteny with rice.	Funct Integr Genomics	8	33-42	2008		
31851	17650514	Fourquin C,Vinauger-Douard M,Chambrier P,Berne-Dedieu A,Scutt CP	Functional conservation between CRABS CLAW orthologues from widely diverged angiosperms.	Ann. Bot.	100	651-7	2007		
31852	17623303	Kang SG,Matin MN,Bae H,Natarajan S	Proteome analysis and characterization of phenotypes of lesion mimic mutant spotted leaf 6 in rice.	Proteomics	7	2447-58	2007		
31853	17622268	Kato H,Tezuka K,Feng YY,Kawamoto T,Takahashi H,Mori K,Akagi H	Structural diversity and evolution of the Rf-1 locus in the genus Oryza.	Heredity	99	516-24	2007	RF1,RF1B,RF1E,RF1C,RF1D,RF1F	Rf1 (Rf-1), rf-1, PPR791, PPR8-1, Rf-1, Rf1, Rf-1A, Rf5, Rf1a, RF5, Rf5(t)*(Rf(t)*), RF1A, PPR6, PLS31, OsPLS31,RF1b, Rf-1B, PPR7,Rf-1E,Rf-1C,Rf-1D,Rf-1F
31854	17608495	Akiyama H,Sasaki N,Sakata K,Ohmori K,Toyota A,Kikuchi Y,Watanabe T,Furui S,Kitta K,Maitani T	Indicated detection of two unapproved transgenic rice lines contaminating vermicelli products.	J. Agric. Food Chem.	55	5942-7	2007		
31855	17601611	Zhang Q,Xu J,Li Y,Xu P,Zhang H,Wu X	Morphological, anatomical and genetic analysis for a rice mutant with abnormal hull.	J Genet Genomics	34	519-26	2007		
31856	17587382	Ballini E,Berruyer R,Morel JB,Lebrun MH,Notteghem JL,Tharreau D	Modern elite rice varieties of the 'Green Revolution' have retained a large introgression from wild rice around the Pi33 rice blast resistance locus.	New Phytol.	175	340-50	2007	PI33	Pi33(t), RMg70, Pi-33(t), Pi-33, Pi33
31857	17561926	Wu J,Yu L,Li L,Hu J,Zhou J,Zhou X	Oral immunization with transgenic rice seeds expressing VP2 protein of infectious bursal disease virus induces protective immune responses in chickens.	Plant Biotechnol J.	5	570-8	2007		
31858	17548332	Guo SQ,Huang J,Jiang Y,Zhang HS	[Cloning and characterization of RZF71 encoding a C2H2-type zinc finger protein from rice]	Yi Chuan	29	607-13	2007	ZFP252	RZF71, DLN263, OsDLN263
31859	17472566	Ueguchi-Tanaka M,Nakajima M,Motoyuki A,Matsuoka M	Gibberellin receptor and its role in gibberellin signaling in plants.	Annu. Rev. Plant Biol.	58	183-98	2007		
31860	17469777	Jiang L,Xu J,Wei X,Wang S,Tang J,Zhai H,Wan J	The inheritance of early heading in the rice variety USSR5.	J Genet Genomics	34	46-55	2007	EF1,HD4,ISE1	Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,Hd4(t), qHD4(t), qHD4,iSe1, i-Se-1
31861	17468779	Li P,Wang Y,Qian Q,Fu Z,Wang M,Zeng D,Li B,Wang X,Li J	LAZY1 controls rice shoot gravitropism through regulating polar auxin transport.	Cell Res	17	402-10	2007	LA1	OsLa1
31862	17237471	Yasuno N,Yasui Y,Takamure I,Kato K	Genetic interaction between 2 tillering genes, reduced culm number 1 (rcn1) and tillering dwarf gene d3, in rice.	J. Hered.	98	169-72	2007		
31863	17226056	Zhang H,Li S,Yi P,Wan C,Chen Z,Zhu Y	A Honglian CMS line of rice displays aberrant F0 of F0F1-ATPase.	Plant Cell Rep.	26	1065-71	2007		
31864	17208508	Perata P,Voesenek LA	Submergence tolerance in rice requires Sub1A, an ethylene-response-factor-like gene.	Trends Plant Sci.	12	43-6	2007		
31865	17138543	Chen YH,Zhao S,Liu J,Yan QQ,Xiao GY	[Genetic analysis and SSR marker of tolerance to submergence in rice]	Yi Chuan	28	1562-6	2006		
31866	17136305	Liu JG,Zhang Z,Qin QL,Peng RH,Xiong AS,Chen JM,Xu F,Zhu H,Yao QH	Isolated and characterization of a cDNA encoding ethylene-responsive element binding protein (EREBP)/AP2-type protein, RCBF2, in Oryza sativa L.	Biotechnol. Lett.	29	165-73	2007		
31867	17103003	Tobias DJ,Manoharan M,Pritsch C,Dahleen LS	Co-bombardment, integration and expression of rice chitinase and thaumatin-like protein genes in barley (Hordeum vulgare cv. Conlon).	Plant Cell Rep.	26	631-9	2007		
31868	17075175	Wang Y,Wang YF,Zhang DB	[Identification of the rice (Oryza sativa L.) mutant msp1-4 and expression analysis of its UDT1 and GAMYB genes]	Zhi Wu Sheng Li Yu Fen Zi Sheng Wu Xue Xue Bao	32	527-34	2006		
31869	17056172	Nakai H,Ito T,Hayashi M,Kamiya K,Yamamoto T,Matsubara K,Kim YM,Jintanart W,Okuyama M,Mori H,Chiba S,Sano Y,Kimura A	Multiple forms of alpha-glucosidase in rice seeds (Oryza sativa L., var Nipponbare).	Biochimie	89	49-62	2007	ONG2,ONG4,ONG1	ONG3, ONG2-I, ONG2-II,,ong1-3, ong1-4, OsGH, GH
31870	17035185	Tang D,Guo LB,Zeng DL,Zhang GH,Cheng ZK,Qian Q	[Genetic analysis of two extremely segregation distorted populations in rice (Oryza sativa L.)]	Yi Chuan	28	1259-64	2006		
31871	17002881	Zhou G,Xu Y,Li J,Yang L,Liu JY	Molecular analyses of the metallothionein gene family in rice (Oryza sativa L.).	J. Biochem. Mol. Biol.	39	595-606	2006	MTII1A,MTI3B,MTI4A,MTI4B,MTI3A,MT2A,MT2B,MTI4C,MTI1A,MTI1B	OsMT4, OsMT-II-1a, MT4, MT-II-1a,MTd, OsMT-I-3b, OsMT3b, MT-I-3b, MT3b,OsMT1a, OsMT1a1, OsMT1a2, OsMT-I-4a, OsIDS1, OsMT1b, MT1b,OsMT1c, MT1c, OsMT-I-4b, MT-I-4b, OsMT1f, MT1f, MT1Lc, OsMT1Lc ,OsMT3a, MT3a, OsMT-I-3a, MT-I-3a, MTe, met2, OsMT3, MT3, OsMTI-3a, MTI-3a,OsMT2a, MT2a, met6, Osmet6, OsMT-2, MT-2, rgMT-2, OsMT-I-2a, OsMT2-1, MT-I-2a, MT2-1,OsMT2b, MT2b, OsMT-I-2c, MT-I-2c, MT2C, MT2BL, OsMT2C, OsMT2BL, MTE, OsMT2b1, OsMT2b2, MT2b1, MT2b2, MTb, met1, OsMTe, OsMT-I-2c, OsB22EL8, MTe, MT-I-2c, B22EL8,MT-1-4b, OsMT1d, MT1d, OsMT-I-4c, MT1c, OsMT1c,MT1a, OsMT1a, OsMT1e, OsMT-I-1a, MT-I-1a, OsMT1e-P, MTa, rgMT, OsMT-1, rgMT-1,OsMT1b, MT1b, OsMT-I-1b, OsMTI-1b, MT-I-1b, MTI-1b, MT1La, OsMT1La, OsMT1
31872	16939006	Sun LH,Wang CM,Su CC,Liu YQ,Zhai HQ,Wan JM	Mapping and marker-assisted selection of a brown planthopper resistance gene bph2 in rice (Oryza sativa L.).	Acta genetica Sinica	33	717-23	2006		
31873	16912923	Jin S,Cheng Y,Guan Q,Liu D,Takano T,Liu S	A metallothionein-like protein of rice (rgMT) functions in E. coli and its gene expression is induced by abiotic stresses.	Biotechnol. Lett.	28	1749-53	2006		
31874	16670901	Rasmussen TB,Donaldson IA	Investigation of the endosperm-specific sucrose synthase promoter from rice using transient expression of reporter genes in guar seed tissue.	Plant Cell Rep.	25	1035-42	2006		
31875	16553215	Su CC,Zhai HQ,Wang CM,Sun LH,Wan JM	SSR mapping of brown planthopper resistance gene Bph9 in Kaharamana, an Indica rice (Oryza sativa L.).	Acta genetica Sinica	33	262-8	2006		
31876	16540337	Pagliano C,Raviolo M,Dalla Vecchia F,Gabbrielli R,Gonnelli C,Rascio N,Barbato R,La Rocca N	Evidence for PSII donor-side damage and photoinhibition induced by cadmium treatment on rice (Oryza sativa L.).	J Photochem Photobiol B	84	70-8	2006		
31877	16511358	Moon S,Jung KH,Lee DE,Lee DY,Lee J,An K,Kang HG,An G	The rice FON1 gene controls vegetative and reproductive development by regulating shoot apical meristem size.	Mol. Cells	21	147-52	2006		
31879	17335506	Morel, J.-B.	Early and specific gene expression triggered by rice resistance gene Pi33 in response to infection by ACE1 avirulent blast fungus.	New Phytol.	174	159	2007	PI33	Pi33(t), RMg70, Pi-33(t), Pi-33, Pi33
31880		R. Nandakumar , S. Babu, K. Kalpana, T. Raguchander, P. Balasubramanian and R. Samiyappan	 Agrobacterium-mediated transformation of indica rice with chitinase gene for enhanced sheath blight resistance.	Biologia plantarum.	51(1)	142-148	2007		
31881	17221232	Yuemin Huang, Benze Xiao and Lizhong Xiong	 Characterization of a stress responsive proteinase inhibitor gene with positive effect in improving drought resistance in rice.	Planta.	226	73-85	2007	OCPI1	OsCPI1, CPI1
31883		H. Q. Feng, H. Y. Li, G. M. Zhou, H. G. Liang, J. G. Duan, D. J. Zhi, X. Li and J. Ma 	 Influence of irradiation on cyanide-resistant respiration and AOX1 multi-gene family expression during greening of etiolated rice seedlings.	Photosynthetica.	45	272-279	2007		
31884	17549514	Z. G. Zhao, L. Jiang, W. W. Zhang, C. Y. Yu, S. S. Zhu, K. Xie, H. Tian, L. L. Liu, H. Ikehashi and J. M. Wan	 Fine mapping of S31, a gene responsible for hybrid embryo-sac abortion in rice (Oryza sativa L.).	Planta.	226	1087-96	2007		
31885	18943579	K. Zenbayashi-Sawata, S. Fukuoka, S. Katagiri, M. Fujisawa, T. Matsumoto, T. Ashizawa and S. Koizumi	 Genetic and Physical Mapping of the Partial Resistance Gene, Pi34, to Blast in Rice.	Phytopathology	97	598-602	2007	PIQ6,PI34	Piq6(t),Pi34, RMg71, Pi24(t)
31886		Yellari Amarawathi, Rakesh Singh, Ashok K. Singh, Vijai P. Singh, Trilochan Mohapatra, Tilak R. Sharma and Nagendra K. Singh	Mapping of quantitative trait loci for basmati quality traits in rice (Oryza sativa L.)	Molecular Breeding	21	49-65	2008		
31887		Duncan A. Vaughan, Bao-Rong Lu and Norihiko Tomooka	 The evolving story of rice evolution.	Plant Sci.	174(4)	394-408	2008		
31888		Tatsuro Hirose, Graham N. Scofield and Tomio Terao	An expression analysis profile for the entire sucrose synthase gene family in rice	Plant Sci.	174(5)	534-543	2008		
31889		Xiangjin Wei a, Ling Jiang a, Junfeng Xu a, Wenwei Zhang a, Guangwen Lu a, Yongsheng Zhang a and Jianmin Wan	Genetic analyses of heading date of Japonica rice cultivars from Northeast China	Field Crops Research	107	147-154	2008	EF1,SE1,E1	Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, OsHd1,  Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,E1 (=m Ef1+), mEf1+, Hd4(t), m Ef1-a, m Ef1-b
31890	18317774	Xianran Li, Feng Tian, Haiyan Huang, Lubin Tan, Zuofeng Zhu, Songnian Hu and Chuanqing Sun	Construction of the physical map of the gpa7 locus reveals that a large segment was deleted during rice domestication	Plant Cell Rep.	27	1087-92	2008	GPA7	gpa7
31891		Yipei Wei1, Fangyin Yao, Changxiang Zhu, Mingsong Jiang, Guangxian Li, Yunzhi Song and Fujiang Wen	Breeding of transgenic rice restorer line for multiple resistance against bacterial blight, striped stem borer and herbicide	Euphytica	163	177-184	2008		
31892		Weiwei Shi, Yi Yang, Saihua Chen and Mingliang Xu 	Discovery of a new fragrance allele and the development of functional markers for the breeding of fragrant rice varieties.	Molecular Breeding	22	185-192	2008		
31893		Timothy Liam Fitzgerald, Daniel Lex Ean Waters and Robert James Henry	The effect of salt on betaine aldehyde dehydrogenase transcript levels and 2-acetyl-1-pyrroline concentration in fragrant and non-fragrant rice (Oryza sativa).	Plant Sci.	175(4)	539-546	2008		
31894		Ping Chen, Ling Jianga Chuanyuan Yu, Wenwei Zhang, Jiankang Wang and Jianmin Wan	The Identification and Mapping of a Tiller Angle QTL on Rice Chromosome 9.	Crop Sci.	48	1799-1806	2008		
31895	18560761	Yamaji, N. 	Functions and transport of silicon in plants.	Cellular and molecular life sciences CMLS.	65	3049	2008		
31896		Sarah K. Moore and Vibha Srivastava	A bacterial haloalkane dehalogenase (dhlA) gene as conditional negative selection marker for rice callus cells.	In vitro cellular & developmental biology. Plant.	44	468-473	2008		
31897	16033806	Sakurai J, Ishikawa F, Yamaguchi T, Uemura M, Maeshima M	Identification of 33 rice aquaporin genes and analysis of their expression and function	Plant Cell Physiol.	46(9)	1568-77	2005	PIP2;2,PIP1;2,PIP2;8,NIP1;1,PIP2;5,LSI1,PIP1;3,PIP2A,SIP1;1,PIP1A,NIP4;1,PIP2;7,PIP2;4,NIP3;3,AM25,PIP2;6,NIP3;2,NIP1;3,PIP2;3,SIP1;2,ASA,NIP1;2,LSI6	OsPIP2;2, PIP2-2, OsPIP2-3,OsPIP1;2, PIP1-2, OsPIP1-2,OsPIP2;8, PIP2.8, PIP2-8, OsPIP2-7,OsNIP1;1, NIP1-1, rMIP1, MIP1, OsNIP1.1, NIP1.1,OsPIP2;5, PIP2-5,lsi1, NIP2-1, OsNIP2;1, NIP2;1, OsLsi1, lsi(t), OsNIP2.1/OsLsi1/OsSIIT1, OsNIP2.1, NIP2.1,OsPIP1;3. PIP1.3, PIP1-3, RWC3, RWC-3, OsPIP1-3,OsPIP2a, PIP2-1, PIP2a, PIP2.1, OsPIP2;1, PIP2;1, OsPIP2-1,OsSIP1;1, SIP1-1, OsSIP1, SIP1,OsPIP1a, OsPIP1;1, PIP1a, RWC-1, PIP1-1, RWC1, OsPIP1-1, PIP1;1, PIP1-5,OsNIP4;1, NIP4-1, OsNIP4.1, NIP4.1,OsPIP2;7, PIP2.7, PIP2-7, OsPIP2-6, OsPIP-3A, PIP-3A,OsPIP2;4, PIP2.4, PIP2-4, OsPIP2-4,OsNIP3;3, NIP3-3, OsNIP3.3, NIP3.3,AM25, OsNIP1;4, NIP1-4, OsNIP1.4, NIP1.4,OsPIP2;6, PIP2-6, OsPIP2-6, PIP2-5, OsPIP2-5,OsNIP3;2, NIP3-2, OsNIP3.2, NIP3.2,OsNIP1;3, NIP1-3, OsNIP1.3, NIP1.3,OsPIP2;3, PIP2-3, OsPIP2-2,OsSIP1;2, OsSTA98, OsSIP2, SIP2,OsNIP3;1, NIP3;1, NIP3-1, OsNIP3.1, NIP3.1, OsASA,OsNIP1;2, NIP1-2, OsNIP1.2, NIP1.2,Lsi6, OsNIP2;2, NIP2-2, OsLsi6, OsNIP2.2/OsLsi6, OsNIP2.2, NIP2.2
31898	19020855	Zhou L, Chen L, Jiang L, Zhang W, Liu L, Liu X, Zhao Z, Liu S, Zhang L, Wang J, Wan J.	Fine mapping of the grain chalkiness QTL qPGWC-7 in rice (Oryza sativa L.)	Theor. Appl. Genet.	118	581-590	2009		
31899	19760367	Liu L, Ma X, Liu S, Zhu C, Jiang L, Wang Y, Shen Y, Ren Y, Dong H, Chen L, Liu X, Zhao Z, Zhai H, Wan J.	Identification and characterization of a novel Waxy allele from a Yunnan rice landrace.	Plant Mol. Biol.	71	609-26	2009	WX1	wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx
31900		Zhu Susong,Jiang Ling,Wang Chunming,Zhai Huqu,Li Danting,Wan Jianmin,Jiang Ling	The Origin of Weedy Rice Ludao in China Deduced by Genome Wide Analysis of Its Hybrid Sterility Genes	Breeding Science	55(4)	409-414 	2005	S10,S30 	,S30(t)
31901		Zhao Z.G., C. M. Wang, L. Jiang, S. S. Zhu, H. Ikehashi, J. Wan	 Identification of a new hybrid sterility gene in rice (Oryza sativa L.). 	Euphytica	151	 331-337	2006	S31	S31-gi,S31-un,S31-n,S31(t)
31903	16117852	Wang YH, Liu SJ, Ji SL, Zhang WW, Wang CM, Jiang L, Wan JM.	Fine mapping and marker-assisted selection (MAS) of a low glutelin content gene in rice.	Cell Res	15(8)	622-30	2005	LGC2	
31904		Kinae, T., Hong, S.-K., Nagato, Y.	APICAL DISPLACEMENT 1 gene regulates apical-basal pattern formation in rice embryo.	Plant Sci.	168(5)	1345-1351	2005	APD1	apd1, apd1*
31905		T. KINA, M. MATSUOKA and Y. NAGATO	apical displacement 1 affects the shoot position and the number of radicles in rice embryo.	RGN	16	27-30	1999	APD1	apd1, apd1*
31906	16183700	Takashi Sazuka, Ikuko Aichi, Takayuki Kawai, Naoki Matsuo, Hidemi Kitano and Makoto Matsuoka	The Rice Mutant dwarf bamboo shoot 1: A Leaky Mutant of the NACK-type Kinesin-like Gene Can Initiate Organ Primordia but not Organ Development	Plant Cell Physiol.	46(12)	1934-1943	2005	DBS1	dbs1
31907		A. Yoshimura and Y. Nagato	A. Report of the committee on Gene Symbolizatiion, Nomenclature and Linkage Groups	RGN	24	7-9	2008	S30 ,S34,S33,PSS1,S32,LGC2,S31	S30(t),S34(t) ,,pss1, OsPSS1,S32-kn , S32-ti ,S32-n,S32(t)(=qSS2) ,,S31-gi,S31-un,S31-n,S31(t)
31908		Tsutomu Kuboyama, Toshiya Saito, Takashi Matsumoto, Jianzhong Wu, Hiroyuki Kanamori, Satoru Taura, Muneharu Sato, Wataru Marubashi and Katsuyuki Ichitani	Fine Mapping of HWC2, a Complementary Hybrid Weakness Gene, and Haplotype Analysis Around the Locus in Rice	RICE	2	93-103	2009	HWC2	Hwc2(L2b),L-2-b, Lr2, Hwc-2, L2b, Hwc2
31909	19693083	Hattori Y, Nagai K, Furukawa S, Song XJ, Kawano R, Sakakibara H, Wu J, Matsumoto T, Yoshimura A, Kitano H, Matsuoka M, Mori H, Ashikari M.	The ethylene response factors SNORKEL1 and SNORKEL2 allow rice to adapt to deep water.	Nature	460(7258)	1026-30	2009	SNK2,SNK1	SK2, OsSK2, OsSNK2,SK1, OsSK1, OsSNK1, SK1C9285
31910	16147864	Huang, Ji; Wang, Jian Fei; Wang, Qi Hong; Zhang, Hong Sheng	Identification of a rice zinc finger protein whose expression is transiently induced by drought, cold but not by salinity and abscisic acid	DNA Seq.	16	130-136	2005	ZFP245	OsZFP245, DLN192, OsDLN192, ZOS7-08, OsZOS7-08
31911	19135985	Zheng X,Chen B,Lu G,Han B	Overexpression of a NAC transcription factor enhances rice drought and salt tolerance.	Biochem. Biophys. Res. Commun.	379	985-9	2009	LEA3-1,PM1,NAC45	OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3, OsLEA3A, LEA3A,AWPM-19, PM19, OsPM1, OsPM-1, OsPM19L1, PM19L1, OsAWPM-19, OsPM19,ONAC045, ONAC45, DLN243, OsDLN243, OsNAM, NAM
31912	19135278	Zou J,Liu A,Chen X,Zhou X,Gao G,Wang W,Zhang X	Expression analysis of nine rice heat shock protein genes under abiotic stresses  and ABA treatment.	J. Plant Physiol.	166	851-61	2009	HSP17.7,HSP58.7,HSP24.1,HSP16.9B,HSP90,HSP71.1,HSP80.2,HSP50.2,HSP23.7,HSP26,HSP74.8	OsHsp17.7, OsHSP17.4-CI, OsHSP17.7, Oshsp17.7,OsHsp58.7, OsHSP58.7, OsISC25, ISC25,OsHsp24.1, OsHSP24.1,Oshsp16.9B, OsHsp16.9B, HSP16.9B, OsHsp17.0, OsHSP16.9B-CI, OsHSP17.0, Hsp17.0, OsSHSP2, OsSTA3,OsHsp90, rHSP90, OsHSP90, GRP94, OsGRP94,OsHsp71.1, OsHSP71.1, OsMED37_3, MED37_3 ,OsHsp80.2, OsHSP80.2,OsHsp50.2, OsHSP50.2,OsHsp23.7, OsHSP23.7,OsHSP26, Oshsp26, OsHSP26.7, HSP26.7,OsHsp74.8, OsHSP74.8
31913	19132872	Domingo C,Andres F,Tharreau D,Iglesias DJ,Talon M	Constitutive expression of OsGH3.1 reduces auxin content and enhances defense response and resistance to a fungal pathogen in rice.	Mol. Plant Microbe Interact.	22	201-10	2009	LC1	OsGH3-1, GH3-1, OsGH3.1,GH3.1, OsLC1
31914	19123010	Shimatani Z,Takagi K,Eun CH,Maekawa M,Takahara H,Hoshino A,Qian Q,Terada R,Johzuka-Hisatomi Y,Iida S,Tsugane K	Characterization of autonomous Dart1 transposons belonging to the hAT superfamily in rice.	Mol. Genet. Genomics	281	329-44	2009	ADART1-27,NDART1-0,DART1-27	aDart1-27,nDART1-0,Dart1-27
31915	19123004	Cai H,Zhou Y,Xiao J,Li X,Zhang Q,Lian X	Overexpressed glutamine synthetase gene modifies nitrogen metabolism and abiotic  stress responses in rice.	Plant Cell Rep.	28	527-37	2009		
31916	19118651	Tian L,Zhang L,Zhang J,Song Y,Guo Y	Differential proteomic analysis of soluble extracellular proteins reveals the cysteine protease and cystatin involved in suspension-cultured cell proliferation in rice.	Biochim. Biophys. Acta	1794	459-67	2009		
31917	19116760	Li X,Yang Y,Yao J,Chen G,Li X,Zhang Q,Wu C	FLEXIBLE CULM 1 encoding a cinnamyl-alcohol dehydrogenase controls culm mechanical strength in rice.	Plant Mol. Biol.	69	685-97	2009	FC1	OsCAD7, fc1, CAD7
31918	19116133	Cho K,Agrawal GK,Jwa NS,Kubo A,Rakwal R	Rice OsSIPK and its orthologs: a "central master switch" for stress responses.	Biochem. Biophys. Res. Commun.	379	649-53	2009		
31919	19103168	Ke Y,Han G,He H,Li J	Differential regulation of proteins and phosphoproteins in rice under drought stress.	Biochem. Biophys. Res. Commun.	379	133-8	2009	GER5	OsGLP1, GLP1, GER1, GLP110, OsGER1, OsGER5, OsGLP8-14, GLP8-14, OsCDP8.14, CDP8.14
31920	19098326	Matsumoto T,Lian HL,Su WA,Tanaka D,Liu C,Iwasaki I,Kitagawa Y	Role of the aquaporin PIP1 subfamily in the chilling tolerance of rice.	Plant Cell Physiol.	50	216-29	2009	PIP1A,PIP2;2,PIP2;8,PIP2;5,PIP2;6,PIP1;2,PIP2;4,PIP2;7,PIP2A,PIP2;3,PIP1;3	OsPIP1a, OsPIP1;1, PIP1a, RWC-1, PIP1-1, RWC1, OsPIP1-1, PIP1;1, PIP1-5,OsPIP2;2, PIP2-2, OsPIP2-3,OsPIP2;8, PIP2.8, PIP2-8, OsPIP2-7,OsPIP2;5, PIP2-5,OsPIP2;6, PIP2-6, OsPIP2-6, PIP2-5, OsPIP2-5,OsPIP1;2, PIP1-2, OsPIP1-2,OsPIP2;4, PIP2.4, PIP2-4, OsPIP2-4,OsPIP2;7, PIP2.7, PIP2-7, OsPIP2-6, OsPIP-3A, PIP-3A,OsPIP2a, PIP2-1, PIP2a, PIP2.1, OsPIP2;1, PIP2;1, OsPIP2-1,OsPIP2;3, PIP2-3, OsPIP2-2,OsPIP1;3. PIP1.3, PIP1-3, RWC3, RWC-3, OsPIP1-3
31921	19089317	Goh CH,Jang S,Jung S,Kim HS,Kang HG,Park YI,Bae HJ,Lee CH,An G	Rice phot1a mutation reduces plant growth by affecting photosynthetic responses to light during early seedling growth.	Plant Mol. Biol.	69	605-19	2009		
31922	19086295	Cheung MY,Zeng NY,Tong SW,Li WY,Xue Y,Zhao KJ,Wang C,Zhang Q,Fu Y,Sun Z,Sun SS,Lam HM	Constitutive expression of a rice GTPase-activating protein induces defense responses.	New Phytol.	179	530-45	2008	PR10A,_,YCHF1,PR1B,C2DP16	PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,GRP, Osgrp-2, OsGRP-2, GRCWP, OsGRP2, GRP2,OsYchF1, YchF1, OsPM8ATP ,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1, OsPR1a, PR1a,OsGAP1, GAP1, OsC2DP16
31923	19054337	Tang LK,Chu H,Yip WK,Yeung EC,Lo C	An anther-specific dihydroflavonol 4-reductase-like gene (DRL1) is essential for  male fertility in Arabidopsis.	New Phytol.	181	576-87	2009		
31924	19048288	Lu G,Gao C,Zheng X,Han B	Identification of OsbZIP72 as a positive regulator of ABA response and drought tolerance in rice.	Planta.	229	605-15	2009	BZIP72	OsbZIP72, OsAREB2, OsABF4, ABF4, Osbzip72, OsABI5, ABI5
31925	19047499	Chang C,Hu Y,Sun S,Zhu Y,Ma G,Xu G	Proton pump OsA8 is linked to phosphorus uptake and translocation in rice.	J. Exp. Bot.	60	557-65	2009	AHA8,PT6	OSA8, OsA8, A8, osAHA8, AHA8, Os-HA1, OsHA1,OsPT6, PHT1-6, OsPht1;6, OsLPT6:1, OsLPT1, OsPT6:1, Pht1;6, LPT6:1, LPT1, PT6:1
31926	19039666	Li H,Zhou SY,Zhao WS,Su SC,Peng YL	A novel wall-associated receptor-like protein kinase gene, OsWAK1, plays important roles in rice blast disease resistance.	Plant Mol. Biol.	69	337-46	2009	_	OsWAK1, WAK1
31927	19036832	Zhang L,Tian LH,Zhao JF,Song Y,Zhang CJ,Guo Y	Identification of an apoplastic protein involved in the initial phase of salt stress response in rice root by two-dimensional electrophoresis.	Plant Physiol.	149	916-28	2009	RMC,RAB16A,DREB2A	OsRMC, OsRLK, OsDUF26, DUF26, OsCBMIP, CBMIP, NCS, OsNCS, OsCRK5, CRK5,Rab16A, rab21, RAB21, OsRab21, OsRAB21, OsRAB-21, OsRab16A, OsLEA29, rab16A, OsRAB16A,OsDREB2A, OsDREB2a, ERF40, OsERF#040, OsERF040, OsERF40, AP2/EREBP#167, AP2/EREBP167
31928	19011004	Yokosho K,Yamaji N,Ueno D,Mitani N,Ma JF	OsFRDL1 is a citrate transporter required for efficient translocation of iron in  rice.	Plant Physiol.	149	297-305	2009	_,_,FRDL1,FRDL4	OsFRDL2,OsFRDL3,OsFRDL1,OsFRDL4, MATE
31929	19010999	Cho JI,Ryoo N,Eom JS,Lee DW,Kim HB,Jeong SW,Lee YH,Kwon YK,Cho MH,Bhoo SH,Hahn TR,Park YI,Hwang I,Sheen J,Jeon JS	Role of the rice hexokinases OsHXK5 and OsHXK6 as glucose sensors.	Plant Physiol.	149	745-59	2009	HXK6,HXK5	OsHXK6,OsHXK5
31930	19000161	Wang C,Ying S,Huang H,Li K,Wu P,Shou H	Involvement of OsSPX1 in phosphate homeostasis in rice.	Plant J.	57	895-904	2009	PAP10,MIR399J,MIR399D,LTN1,PT6,IPS1,PI1,SQD2.2,SPX1,PT8,PI1,PT2	OsPAP10,OsmiR399j, osa-miR399j, osa-MIR399j, Os-miR399j, miR399j,OsmiR399d, osa-miR399d, osa-MIR399d, Os-miR399d, miR399d,LTN1, OsPHO2, PHO2.1, PHO2.2, PHO2, OsUBC35, UBC35,OsPT6, PHT1-6, OsPht1;6, OsLPT6:1, OsLPT1, OsPT6:1, Pht1;6, LPT6:1, LPT1, PT6:1,OsIPS1,Pi1, Pi-1, Pi1-5C, Pi1-6C,OsSQD2, SQD2, OsSQD2.2,OsSPX1,OsPT8, PHT1-8, OsPht1;8, Pht1;8, PHT1;8, OsPHT1;8,OsIPS2, IPS2, OsPI1,OsPT2, PTH1-2, OsPht1;2, PHT1;2, OsPHT1;2
31931	18988636	Li GW,Zhang MH,Cai WM,Sun WN,Su WA	Characterization of OsPIP2;7, a water channel protein in rice.	Plant Cell Physiol.	49	1851-8	2008		
31932	18986259	Takai R,Isogai A,Takayama S,Che FS	Analysis of flagellin perception mediated by flg22 receptor OsFLS2 in rice.	Mol. Plant Microbe Interact.	21	1635-42	2008	NAC4,FLS2	OsNAC4, NAC68, ONAC068, OnNAC4*, OnNAC4, OsNAC4/ONAC068,Os-FLS2, OsFLS2, OsCLV2f, CLV2f
31933	18980953	Kawakatsu T,Yamamoto MP,Hirose S,Yano M,Takaiwa F	Characterization of a new rice glutelin gene GluD-1 expressed in the starchy endosperm.	J. Exp. Bot.	59	4233-45	2008	GLUD1	GluD1, GluD-1, OsGluD-1, OsEnS-33, EnS-33, GluD
31934	18980660	Wang L,Wang Z,Xu Y,Joo SH,Kim SK,Xue Z,Xu Z,Wang Z,Chong K	OsGSR1 is involved in crosstalk between gibberellins and brassinosteroids in rice.	Plant J.	57	498-510	2009	BRD1,_,D61,_,SLR1,GW6,GNP1,_	brd1, OsDWARF, DWARF, OsBR6ox, BR6ox, CYP85A1, CYP85A4, OsDWF, CYP85A1/OsDWARF, OsBRD1, OsCYP85A1,DWF1, DIM/DWF1, DIM,d61*, dwf42, d61, OsBRI1, OSBRI1, BRI1, Os BRI1, Osbri1, OsBRKq1, BRKq1,OsGASR2, GASR2,slr1-1, slr1, slr, GAI, OsGAI, OsSLR1, Os SLR1, OsRGA1, OsGRAS-18, OsGRAS-18, GRAS-18, GRAS18, SLR-1,OsGSR1, GSR1, OsGASR7, GASR7, OsGW6, OsGASR7/GW6,GA20OX1, OsGA20ox1, 20ox1, GA20ox-1, ga20ox1, Os20ox, C20OX2, OsGA20ox2, OsGA20ox-1, GA20ox1, OsGNP1,OsGASR1, GASR1
31935	18980647	Ai P,Sun S,Zhao J,Fan X,Xin W,Guo Q,Yu L,Shen Q,Wu P,Miller AJ,Xu G	Two rice phosphate transporters, OsPht1;2 and OsPht1;6, have different functions  and kinetic properties in uptake and translocation.	Plant J.	57	798-809	2009	PT6,PT2	OsPT6, PHT1-6, OsPht1;6, OsLPT6:1, OsLPT1, OsPT6:1, Pht1;6, LPT6:1, LPT1, PT6:1,OsPT2, PTH1-2, OsPht1;2, PHT1;2, OsPHT1;2
31936	18956194	Itabashi E,Kazama T,Toriyama K	Characterization of cytoplasmic male sterility of rice with Lead Rice cytoplasm in comparison with that with Chinsurah Boro II cytoplasm.	Plant Cell Rep.	28	233-9	2009		
31937	18952157	Singh A,Sahi C,Grover A	Chymotrypsin protease inhibitor gene family in rice: Genomic organization and evidence for the presence of a bidirectional promoter shared between two chymotrypsin protease inhibitor genes.	Gene	428	9-19	2009	OCPI2,OCPI1	OsSRO1a, SRO1a, CPI2, OsCPI2, OCPI1,OsCPI1, CPI1
31938	18931143	Xiang Y,Tang N,Du H,Ye H,Xiong L	Characterization of OsbZIP23 as a key player of the basic leucine zipper transcription factor family for conferring abscisic acid sensitivity and salinity and drought tolerance in rice.	Plant Physiol.	148	1938-52	2008	_,BZIP23	OsABA45, ABA45, OsGDP, GDP, OsASR, ASR,OsbZIP23, OsAREB1, OsABF2, Osbzip23, OsAREB2, OsZIP23, ZIP23
31939	18854333	Jang YH,Lee JH,Kim JK	Abscisic acid does not disrupt either the Arabidopsis FCA-FY interaction or its rice counterpart in vitro.	Plant Cell Physiol.	49	1898-901	2008		
31940	18826431	Boden SA,Langridge P,Spangenberg G,Able JA	TaASY1 promotes homologous chromosome interactions and is affected by deletion of Ph1.	Plant J.	57	487-97	2009		
31941	18826428	Umemura K,Satou J,Iwata M,Uozumi N,Koga J,Kawano T,Koshiba T,Anzai H,Mitomi M	Contribution of salicylic acid glucosyltransferase, OsSGT1, to chemically induced disease resistance in rice plants.	Plant J.	57	463-72	2009		
31943	18813955	Ning J,Liu S,Hu H,Xiong L	Systematic analysis of NPK1-like genes in rice reveals a stress-inducible gene cluster co-localized with a quantitative trait locus of drought resistance.	Mol. Genet. Genomics	280	535-46	2008		
31944	18810384	Peng HF,Zhang ZF,Wu B,Chen XH,Zhang GQ,Zhang ZM,Wan BH,Lu YP	Molecular mapping of two reverse photoperiod-sensitive genic male sterility genes (rpms1 and rpms2) in rice (Oryza sativa L.).	Theor. Appl. Genet.	118	77-83	2008		
31945	18790997	Matsubara K,Yamanouchi U,Wang ZX,Minobe Y,Izawa T,Yano M	Ehd2, a rice ortholog of the maize INDETERMINATE1 gene, promotes flowering by up-regulating Ehd1.	Plant Physiol.	148	1425-35	2008	EHD2/RID1	Ehd2, RID1, OsID1, ID1, OsId1, OsID, Ehd2/RID1/OsId1, RID1/OsID1/Ehd2
31946	18778405	Sato Y,Morita R,Katsuma S,Nishimura M,Tanaka A,Kusaba M	Two short-chain dehydrogenase/reductases, NON-YELLOW COLORING 1 and NYC1-LIKE, are required for chlorophyll b and light-harvesting complex II degradation during senescence in rice.	Plant J.	57	120-31	2009	NYC1,NOL	nyc1, OsNYC1,nol, NOL1, OsNOL, OsNOL1
31947	18777179	Gao S,Zhang H,Tian Y,Li F,Zhang Z,Lu X,Chen X,Huang R	Expression of TERF1 in rice regulates expression of stress-responsive genes and enhances tolerance to drought and high-salinity.	Plant Cell Rep.	27	1787-95	2008		
31948	18774969	Park SJ,Kim SL,Lee S,Je BI,Piao HL,Park SH,Kim CM,Ryu CH,Park SH,Xuan YH,Colasanti J,An G,Han CD	Rice Indeterminate 1 (OsId1) is necessary for the expression of Ehd1 (Early heading date 1) regardless of photoperiod.	Plant J.	56	1018-29	2008	MADS51,GI,EHD2/RID1,HD3A,MADS50,RFT1,EF1	OsMADS51, OsMADS65, MADS65, qHd1, DLN36, OsDLN36,OsGI, Gi, Os-GI,Ehd2, RID1, OsID1, ID1, OsId1, OsID, Ehd2/RID1/OsId1, RID1/OsID1/Ehd2,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,OsMADS50, AGL20, SOC1, OsSOC1, RMADS208, OsSOC1/ OsMADS50/DTH3, DTH3, OsDTH3,FT-L 3, OsFTL3, FTL3, FT-L3, RFT, OsRFT1,Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 
31949	18765808	Sun Q,Zhou DX	Rice jmjC domain-containing gene JMJ706 encodes H3K9 demethylase required for floral organ development.	Proc. Natl. Acad. Sci. U.S.A.	105	13679-84	2008	_,SE14,_,_,_,_,_,_,_,_,_,MADS24,JMJ718,JMJ706,JMJ707,MADS47,_,_,JMJ719,JMJ702,JMJ715,JMJ705,DH1	JMJ708,JMJ701, Os JMJ701, Se14,JMJ704,JMJ716,  OsRING427, RING427,JMJ720,  OsRING445, RING445,JMJ714,JMJ713,JMJ712,JMJ717,JMJ709,JMJ711, OsFbox149, Os_F0347, DLN88, OsDLN88,  OsFBO14, FBO14,OsMADS24, MADS8, OsMADS8, OsMADS8/24 ,OsJMJ718,OsJMJ706,OsJMJ707, DLN65, OsDLN65,OsMADS47, OsMDP1, MDP, MDP1,JMJ710, OsFbox611, Os_F0574,  OsFBO15, FBO15,JMJ703,OsJMJ719,OsJMJ702, DLN257, OsDLN257,OsJMJ715,OsJMJ705,OsDH1, OsLBD2-1, LBD2-1, OsLOB16, LOB16
31950	18762904	Li S,Tan Y,Wang K,Wan C,Zhu Y	Gametophytically alloplasmic CMS line of rice (Oryza sativa L.) with variant orfH79 haplotype corresponds to specific fertility restorer.	Theor. Appl. Genet.	117	1389-97	2008		
31951	18758744	Xu X,Chen H,Fujimura T,Kawasaki S	Fine mapping of a strong QTL of field resistance against rice blast, Pikahei-1(t), from upland rice Kahei, utilizing a novel resistance evaluation system in the greenhouse.	Theor. Appl. Genet.	117	997-1008	2008	PI63	Pi63, Pikahei-1(t), RGA3, RGA1-NB
31952	18723667	Chi YH,Moon JC,Park JH,Kim HS,Zulfugarov IS,Fanata WI,Jang HH,Lee JR,Lee YM,Kim ST,Chung YY,Lim CO,Kim JY,Yun DJ,Lee CH,Lee KO,Lee SY	Abnormal chloroplast development and growth inhibition in rice thioredoxin m knock-down plants.	Plant Physiol.	148	808-17	2008	TRX29,TRX14	OsTRX m5, Ostrxm5, OsTRXM5, TRXM5, OsTrxm, OsTrx29, Trx29,OsTRX m2, TRX m2, OsTRXM2, TRXM2, OsTrx14, Trx14
31953	18701670	Han Y,Cao H,Jiang J,Xu Y,Du J,Wang X,Yuan M,Wang Z,Xu Z,Chong K	Rice ROOT ARCHITECTURE ASSOCIATED1 binds the proteasome subunit RPT4 and is degraded in a D-box and proteasome-dependent manner.	Plant Physiol.	148	843-55	2008		
31954	18701522	Konishi S,Ebana K,Izawa T	Inference of the japonica rice domestication process from the distribution of six functional nucleotide polymorphisms of domestication-related genes in various landraces and modern cultivars.	Plant Cell Physiol.	49	1283-93	2008	WX1,GW5,RC,QSH1,RD	wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx,qSW5/GW5, GSE5, OsGSE5, OsGW5, qSW5,Rc, OsbHLH017, OsbHLH17, SD7-1, qSD7-1/qPC7, OsGL3C, GL3C,qSH1, qsh1, qSH-1, RIL1, OsRIL1 ,Rd, DFR, OsDFR, OS-DFR, OsDFR1, DFR1, DFR-1
31955	18689882	Wan X,Weng J,Zhai H,Wang J,Lei C,Liu X,Guo T,Jiang L,Su N,Wan J	Quantitative trait loci (QTL) analysis for rice grain width and fine mapping of an identified QTL allele gw-5 in a recombination hotspot region on chromosome 5.	Genetics	179	2239-52	2008		
31956	18656444	Kim BK,Fujioka S,Takatsuto S,Tsujimoto M,Choe S	Castasterone is a likely end product of brassinosteroid biosynthetic pathway in rice.	Biochem. Biophys. Res. Commun.	374	614-9	2008	BRD1	brd1, OsDWARF, DWARF, OsBR6ox, BR6ox, CYP85A1, CYP85A4, OsDWF, CYP85A1/OsDWARF, OsBRD1, OsCYP85A1
31957	18643988	Miki D,Shimamoto K	De novo DNA methylation induced by siRNA targeted to endogenous transcribed sequences is gene-specific and OsMet1-independent in rice.	Plant J.	56	539-49	2008		
31958	18641966	Shimizu A,Kato K,Komatsu A,Motomura K,Ikehashi H	Genetic analysis of root elongation induced by phosphorus deficiency in rice (Oryza sativa L.): fine QTL mapping and multivariate analysis of related traits.	Theor. Appl. Genet.	117	987-96	2008		
31959	18614714	Pedas P,Ytting CK,Fuglsang AT,Jahn TP,Schjoerring JK,Husted S	Manganese efficiency in barley: identification and characterization of the metal  ion transporter HvIRT1.	Plant Physiol.	148	455-66	2008		
31960	18575836	Kashiwagi T,Togawa E,Hirotsu N,Ishimaru K	Improvement of lodging resistance with QTLs for stem diameter in rice (Oryza sativa L.).	Theor. Appl. Genet.	117	749-57	2008		
31961	18574592	Yu D,Ranathunge K,Huang H,Pei Z,Franke R,Schreiber L,He C	Wax Crystal-Sparse Leaf1 encodes a beta-ketoacyl CoA synthase involved in biosynthesis of cuticular waxes on rice leaf.	Planta.	228	675-85	2008	WSL1	OsWSL1, FAE', OsFAE1', OsCER6, CER6, OsKCS17, KCS17
31962	18557835	Whiteman SA,Nuhse TS,Ashford DA,Sanders D,Maathuis FJ	A proteomic and phosphoproteomic analysis of Oryza sativa plasma membrane and vacuolar membrane.	Plant J.	56	146-56	2008		
31963	18516586	Brooks SA,Yan W,Jackson AK,Deren CW	A natural mutation in rc reverts white-rice-pericarp to red and results in a new, dominant, wild-type allele: Rc-g.	Theor. Appl. Genet.	117	575-80	2008	RC	Rc, OsbHLH017, OsbHLH17, SD7-1, qSD7-1/qPC7, OsGL3C, GL3C
31964	18449564	Kim SK,Yun CH,Lee JH,Jang YH,Park HY,Kim JK	OsCO3, a CONSTANS-LIKE gene, controls flowering by negatively regulating the expression of FT-like genes under SD conditions in rice.	Planta.	228	355-65	2008	CO3	OsB, OsCO3, OsBBX27, OsCO3/OsB, OsCCT31, CO3, BBX27, CCT31
31965	18442365	Diedhiou CJ,Popova OV,Dietz KJ,Golldack D	The SNF1-type serine-threonine protein kinase SAPK4 regulates stress-responsive gene expression in rice.	BMC Plant Biol	8	49	2008		
31966	18441339	Li D,Liu H,Zhang H,Wang X,Song F	OsBIRH1, a DEAD-box RNA helicase with functions in modulating defence responses against pathogen infection and oxidative stress.	J. Exp. Bot.	59	2133-46	2008	_	OsRH50, OsBIRH1
31967	18413994	Kim JH,Lee YJ,Kim BG,Lim Y,Ahn JH	Flavanone 3beta-hydroxylases from rice: key enzymes for favonol and anthocyanin biosynthesis.	Mol. Cells	25	312-6	2008	F3H2,F3H3,F3H1	OsF3H-2, F3H-2, OsF3H2, FNS1, OsFNS1, OsSAH4, SAH4, OsF3H8, F3H8,OsF3H-3, F3H-3, OsF3H3, OsF3H4, F3H4,OsF3H-1, F3H-1, OsF3H1, OsF3H, F3H, OsF3H3, F3H3
31968	18392854	Mizuno H,Wu J,Katayose Y,Kanamori H,Sasaki T,Matsumoto T	Characterization of chromosome ends on the basis of the structure of TrsA subtelomeric repeats in rice (Oryza sativa L.).	Mol. Genet. Genomics	280	19-24	2008		
31969	18356966	Zuo L,Li S,Chu M,Wang S,Deng Q,Ding L,Zhang J,Wen Y,Zheng A,Li P	Phenotypic characterization, genetic analysis, and molecular mapping of a new mutant gene for male sterility in rice.	Genome	51	303-8	2008	VR1	
31970	18356944	Liu LL,Yan XY,Jiang L,Zhang WW,Wang MQ,Zhou SR,Shen Y,Shen YY,Liu SJ,Chen LM,Wang JK,Wan JM	Identification of stably expressed quantitative trait loci for cooked rice elongation in non-Basmati varieties.	Genome	51	104-12	2008		
31971	18321185	Jia Y,Martin R	Identification of a new locus, Ptr(t), required for rice blast resistance gene Pi-ta-mediated resistance.	Mol. Plant Microbe Interact.	21	396-403	2008	PITA,PTR	Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30, Trx30,Ptr, OsPtr, Ptr(t)
31972	18317796	Jia L,Zhang B,Mao C,Li J,Wu Y,Wu P,Wu Z	OsCYT-INV1 for alkaline/neutral invertase is involved in root cell development and reproductivity in rice (Oryza sativa L.).	Planta.	228	51-9	2008	CYT-INV1	OsCYT-INV1
31973	18295371	Jiang AL,Cheng Y,Li J,Zhang W	A zinc-dependent nuclear endonuclease is responsible for DNA laddering during salt-induced programmed cell death in root tip cells of rice.	J. Plant Physiol.	165	1134-41	2008	_,_	OsNuc37,OsCyt20
31974	18193274	Hwang SH,Lee IA,Yie SW,Hwang DJ	Identification of an OsPR10a promoter region responsive to salicylic acid.	Planta.	227	1141-50	2008	PR10A	PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 
31975	18073417	Kashkush K,Khasdan V	Large-scale survey of cytosine methylation of retrotransposons and the impact of  readout transcription from long terminal repeats on expression of adjacent rice genes.	Genetics	177	1975-85	2007		
31977	18064488	Yokotani N,Ichikawa T,Kondou Y,Matsui M,Hirochika H,Iwabuchi M,Oda K	Expression of rice heat stress transcription factor OsHsfA2e enhances tolerance to environmental stresses in transgenic Arabidopsis.	Planta.	227	957-67	2008		
31978	18022281	Wang J,Shi ZY,Wan XS,Shen GZ,Zhang JL	The expression pattern of a rice proteinase inhibitor gene OsPI8-1 implies its role in plant development.	J. Plant Physiol.	165	1519-29	2008	AM2	OsAM2, OsPI8-1a, PI8-1a
31979	17960484	Wang H,Hao J,Chen X,Hao Z,Wang X,Lou Y,Peng Y,Guo Z	Overexpression of rice WRKY89 enhances ultraviolet B tolerance and disease resistance in rice plants.	Plant Mol. Biol.	65	799-815	2007	WRKY104	OsWRKY104, CRPG32, OsCRPG32
31980	17960419	Ishimaru K,Togawa E,Ookawa T,Kashiwagi T,Madoka Y,Hirotsu N	New target for rice lodging resistance and its effect in a typhoon.	Planta.	227	601-9	2008		
31981	17943312	Lee YJ,Kim BG,Chong Y,Lim Y,Ahn JH	Cation dependent O-methyltransferases from rice.	Planta.	227	641-7	2008	_,_,_	ROMT-16, ROMT16, COA1, CCoAOMT-1, OsROMT-16, OsROMT16, OsCOA1, OsCCoAOMT-1,OsOMT26, ROMT-15, ROMT15, COA20, OsCCoAOMT, CCoAOMT,ROMT-17, ROMT17, CCoAOMT1
31983	17908158	Yu B,Lin Z,Li H,Li X,Li J,Wang Y,Zhang X,Zhu Z,Zhai W,Wang X,Xie D,Sun C	TAC1, a major quantitative trait locus controlling tiller angle in rice.	Plant J.	52	891-8	2007	SPK	Spk(t), Spk(t)*), Spk, OsTAC1, TAC1, qTAC9 
31984	17895583	Morita R,Kusaba M,Iida S,Nishio T,Nishimura M	Knockout of glutelin genes which form a tandem array with a high level of homology in rice by gamma irradiation.	Genes Genet. Syst.	82	321-7	2007		
31985	17893719	Liu X,Wang S,Wang Y,Wei S	Genetic analysis and molecular mapping of a nuclear recessive male sterility gene, ms91(t), in rice.	Genome	50	796-801	2007		
31986	17884044	Wang S,Zhu QH,Guo X,Gui Y,Bao J,Helliwell C,Fan L	Molecular evolution and selection of a gene encoding two tandem microRNAs in rice.	FEBS Lett.	581	4789-93	2007	MIR156E,MIR156L,MIR156G,MIR156D,MIR156J,SDT,MIR156I,MIR156B,MIR156C,MIR156F,MIR156K	miR156e, OsmiR156e, osmiR156e, osa-miR156e, osa-MIR156e,miR156l, OsmiR156l, osmiR156l, osa-miR156l, osa-MIR156l, osa-miR156l-3p, osa-miR156l-5p,miR156g, OsmiR156g, osmiR156g, osa-miR156g, osa-MIR156gosa-miR156g-3p osa-miR156g-5p,miR156d, OsmiR156d, osmiR156d, osa-miR156d, osa-MIR156d,miR156j, OsmiR156j, osmiR156j, osa-miR156j, osa-MIR156josa-miR156j-3p osa-miR156j-5p,miR156h, OsmiR156h, osmiR156h, osa-miR156h, osa-MIR156hosa-miR156h-3p osa-miR156h-5p,miR156i, OsmiR156i, osmiR156i, osa-miR156i, osa-MIR156i,miR156b, OsmiR156b, osmiR156b, osa-miR156b, osa-MIR156b, miR156b*osa-miR156b-3p osa-miR156b-5p,miR156c, OsmiR156c, osmiR156c, osa-miR156c,osa-MIR156c, miR156c*osa-miR156c-3p osa-miR156c-5p,miR156f, osmiR156f, OsmiR156f, osa-miR156f, osa-MIR156fosa-miR156f-3p osa-miR156f-5p,miR156k, OsmiR156k, osmiR156k, osa-miR156k, osa-MIR156k
31987	17870591	Arumugam TU,Davies E,Morita EH,Abe S	Sequence, expression and tissue localization of a gene encoding a makorin RING zinc-finger protein in germinating rice (Oryza sativa L. ssp. Japonica) seeds.	Plant Physiol. Biochem.	45	767-80	2007		
31988	17764506	Ammiraju JS,Zuccolo A,Yu Y,Song X,Piegu B,Chevalier F,Walling JG,Ma J,Talag J,Brar DS,SanMiguel PJ,Jiang N,Jackson SA,Panaud O,Wing RA	Evolutionary dynamics of an ancient retrotransposon family provides insights into evolution of genome size in the genus Oryza.	Plant J.	52	342-51	2007	GRAN1,GRAN2,GRAN3,GRAN4,WALLABI,RIRE2	Gran1,Gran2,Gran3,Gran4,Wallabi,RIRE2, Osr26, Rire2, Retrosat2
31989	17710555	Bashir K,Nagasaka S,Itai RN,Kobayashi T,Takahashi M,Nakanishi H,Mori S,Nishizawa NK	Expression and enzyme activity of glutathione reductase is upregulated by Fe-deficiency in graminaceous plants.	Plant Mol. Biol.	65	277-84	2007	GR2,GR1,GR3	OsGR2, RGRC2, OsGR, OsGR3, OsRGRC2,OsGR1, OsGR2,OsGR3
31990	17690841	Koh S,Lee SC,Kim MK,Koh JH,Lee S,An G,Choe S,Kim SR	T-DNA tagged knockout mutation of rice OsGSK1, an orthologue of Arabidopsis BIN2, with enhanced tolerance to various abiotic stresses.	Plant Mol. Biol.	65	453-66	2007	DHN1,SKETHA,LIP5,_,SKGAMMA,EXPA4,SALT,GSK1,XTH23	LIP9, OsLIP9, lip9, DHN1, DIP1, OsDip1, OsLEA23, OsDhn1, COR410, OsLEA23/DIP1, DIP1/OsLEA23,GSK4, Os GSK4, OsGSK4, OsSKetha, OsSKETHA, OsSK24/OsGSK8, OsSK24, OsGSK8, SK24, GSK8,OsLEA24, LEA24, WSI724, OsWSI724, OsLIP5,OsSKgamma, SKgamma, OsSK11/ OsGSK2, OsSK11, OsGSK2, SK11, GSK2, OsSK12, SK12,OsSKgamma, SKgamma, OsSK11/ OsGSK2, OsSK11, OsGSK2, SK11, GSK2, OsSK12, SK12,OsEXP4 (Os-EXP4), OsEXPA4, OsEXP4, Os-EXP4, OsaEXPa1.22,salT*(sal1), SalT1*, sal1, Sal1, SALT, ML, SalT, OsSalT, OsJRL, JRL, Osl43, OsL43, OsMBL1, MBL1, OsJRL01, JRL01, OsJRL1, JRL1,Os GSK1, OsGSK1, OsSK21/OsGSK1, OsSK21, SK21,OsXTH23, XTR3, OsXTR3
31991	17651366	Tozawa Y,Teraishi M,Sasaki T,Sonoike K,Nishiyama Y,Itaya M,Miyao A,Hirochika H	The plastid sigma factor SIG1 maintains photosystem I activity via regulated expression of the psaA operon in rice chloroplasts.	Plant J.	52	124-32	2007	YGL13,PSAA,PSAB	OsSIG1, SIG1, Os-SigA, OsSigA, Os Sig1, SIGA,PsaA, psaA, PsAA1, psaA1,PsaB, psaB, PsAA2, psaA2
31992	17594063	Lee J,Park JJ,Kim SL,Yim J,An G	Mutations in the rice liguleless gene result in a complete loss of the auricle, ligule, and laminar joint.	Plant Mol. Biol.	65	487-99	2007	LG1,LG2	SPL8, OsSPL8, OsLG1,OsLG2, OsbZIP11, BZIP11
31993	17562186	Deng ZY,Wang T	OsDMC1 is required for homologous pairing in Oryza sativa.	Plant Mol. Biol.	65	31-42	2007	DMC1A,DMC1B	OsDMC1A, OsDmc1A, Dmc1A, DMC1, OsDMC1, RiLIM15A, OsRad51,OsDMC1B, OsDmc1B, Dmc1B, RiLIM15B 
31994	17559517	Ogo Y,Itai RN,Nakanishi H,Kobayashi T,Takahashi M,Mori S,Nishizawa NK	The rice bHLH protein OsIRO2 is an essential regulator of the genes involved in Fe uptake under Fe-deficient conditions.	Plant J.	51	366-77	2007	IRO2	OsIRO2, OsbHLH056, bHLH056, bHLH56, OsbHLH56
31995	17559513	Koiwai H,Tagiri A,Katoh S,Katoh E,Ichikawa H,Minami E,Nishizawa Y	RING-H2 type ubiquitin ligase EL5 is involved in root development through the maintenance of cell viability in rice.	Plant J.	51	92-104	2007	EL5	EL5.1, EL5.2, EL5.3, EL5.4, EL5.5, EL5.6,  OsRING64, RING64
31996	17549515	Liu K,Wang L,Xu Y,Chen N,Ma Q,Li F,Chong K	Overexpression of OsCOIN, a putative cold inducible zinc finger protein, increased tolerance to chilling, salt and drought, and enhanced proline level in  rice.	Planta.	226	1007-16	2007	P5CS,NCA1A	OsP5CS, P5CS1, OsP5CS1, OsALDH18B1, ALDH18B1, OsP5CS-1, P5CS-1,OsCOIN, COIN, OsNCA1a, NCA1a,  OsRING1, RING1
31998	17522954	Takeuchi R,Kimura S,Saotome A,Sakaguchi K	Biochemical properties of a plastidial DNA polymerase of rice.	Plant Mol. Biol.	64	601-11	2007		
31999	17522952	Hua H,Lu Q,Cai M,Xu C,Zhou DX,Li X,Zhang Q	Analysis of rice genes induced by striped stemborer (Chilo suppressalis) attack identified a promoter fragment highly specifically responsive to insect feeding.	Plant Mol. Biol.	65	519-30	2007		
32000	17502899	Smith PH,Hadfield J,Hart NJ,Koebner RM,Boyd LA	STS markers for the wheat yellow rust resistance gene Yr5 suggest a NBS-LRR-type  resistance gene cluster.	Genome	50	259-65	2007		
32001	17245561	Liu S,Cheng Y,Zhang X,Guan Q,Nishiuchi S,Hase K,Takano T	Expression of an NADP-malic enzyme gene in rice (Oryza sativa. L) is induced by environmental stresses; over-expression of the gene in Arabidopsis confers salt and osmotic stress tolerance.	Plant Mol. Biol.	64	49-58	2007	NADP-ME2	OscytME1, OsNADP-ME2-3, NADP-ME2-3
32003	17115300	Wang HJ,Wan AR,Hsu CM,Lee KW,Yu SM,Jauh GY	Transcriptomic adaptations in rice suspension cells under sucrose starvation.	Plant Mol. Biol.	63	441-63	2007		
32004	17036080	Liu S,Tinker NA,Mather DE	Exact word matches in rice pseudomolecules.	Genome	49	1047-51	2006		
32005	17036076	Luo H,Li Y,Yang Z,Zhong B,Xie R,Ren M,Luo D,He G	Fine mapping of a pistilloid-stamen (PS) gene on the short arm of chromosome 1 in rice.	Genome	49	1016-22	2006	SL1	sl1(t), sl1, stl1, opb, OPB1, ps, PS, OPB, DLN2, OsDLN2, OsJAG, JAG, OsJAG.1, OsJAG.2, ZOS1-02, OsZOS1-02
32006	17032619	Ushimaru T,Nakagawa T,Fujioka Y,Daicho K,Naito M,Yamauchi Y,Nonaka H,Amako K,Yamawaki K,Murata N	Transgenic Arabidopsis plants expressing the rice dehydroascorbate reductase gene are resistant to salt stress.	J. Plant Physiol.	163	1179-84	2006		
32007	16959252	Luo YC,Zhou H,Li Y,Chen JY,Yang JH,Chen YQ,Qu LH	Rice embryogenic calli express a unique set of microRNAs, suggesting regulatory roles of microRNAs in plant post-embryogenic development.	FEBS Lett.	580	5111-6	2006	MIR583C,MIR397B,MIR159A,MIR156B,MIR156C,MIR528,MIR156G	miR583c, osa-miR583c, osa-MIR583c,miR397b, osa-miR397b, osa-MIR397b, miR397b*, OsmiR397b, Os-MIR397b,miR159a, osa-miR159a, osa-MIR159a, OsmiR159a, OsmiR159a.2, miR159a.2, OsmiR159a.1, miR159a.1, osa-miR159a.1, osa-miR159a.2,miR156b, OsmiR156b, osmiR156b, osa-miR156b, osa-MIR156b, miR156b*osa-miR156b-3p osa-miR156b-5p,miR156c, OsmiR156c, osmiR156c, osa-miR156c,osa-MIR156c, miR156c*osa-miR156c-3p osa-miR156c-5p,miR528, Osa-miR528, OsmiR528, OsMIR528, osa-MIR528, miR528*, osa-miR528, osa-miR528-5p, MIR528-T1, MIR528-T2,miR156g, OsmiR156g, osmiR156g, osa-miR156g, osa-MIR156gosa-miR156g-3p osa-miR156g-5p
32008	16805731	Zhang YC,Gong SF,Li QH,Sang Y,Yang HQ	Functional and signaling mechanism analysis of rice CRYPTOCHROME 1.	Plant J.	46	971-83	2006	PPS,CRY1B,CRY1A	OsWD40-55, OsCOP1, COP1, YEL, OsYEL, OsPPS, COP1-1, OsCOP1-1,  OsRING347, RING347,OsCRY1b, OsCRY2, CRY1b, CRY1, OsCCT1b, CCT1b,OsCRY1a, OsCRY1, CRY1a, CRY2, OsCCT1a, CCT1a
32009	16766513	Chen F,Li Q,Sun L,He Z	The rice 14-3-3 gene family and its involvement in responses to biotic and abiotic stress.	DNA Res.	13	53-63	2006	GF14D,GF14H,GF14G,GF14B,GID2,GF14A,GF14F	GF14d, OsGF14d, Os14-3-3, 14-3-3d,GF14h, OsGF14h, 14-3-3h,GF14g, OsGF14g, 14-3-3g,GF14b, OsGF14b, 14-3-3b,gid2, GF14e, OsGF14e, OsGID2, 14-3-3e,GF14a, OsGF14a, WIN2, 14-3-3a,GF14f, SR14-3-3, OsGF14f, S94, ric1, 14-3-3f
32010	16755133	Kwon SJ,Lee JK,Hong SW,Park YJ,McNally KL,Kim NS	Genetic diversity and phylogenetic relationship in AA Oryza species as revealed by Rim2/Hipa CACTA transposon display.	Genes Genet. Syst.	81	93-101	2006		
32011	16713279	Lee H,Auh CK,Kim D,Lee TK,Lee S	Exogenous cytokinin treatment maintains cyclin homeostasis in rice seedlings that show changes of cyclin expression when the photoperiod is rapidly changed.	Plant Physiol. Biochem.	44	248-52	2006		
32012	16623891	Nakamura A,Umemura I,Gomi K,Hasegawa Y,Kitano H,Sazuka T,Matsuoka M	Production and characterization of auxin-insensitive rice by overexpression of a  mutagenized rice IAA protein.	Plant J.	46	297-306	2006	IAA31,IAA9,IAA13,IAA10,ARF1,IAA1	OsIAA3, IAA3, OsIAA31, OsIAA30, IAA30,OsIAA9, OsIAA2,OsIAA13, OsIAA1, OsiIAA1,OsIAA10, OsIAA5, DLN71, OsDLN71,OsARF1, arf1, OsARF23, ARF23,OsIAA1, OsIAA4
32013	16604111	Subramanian S,Bonen L	Rapid evolution in sequence and length of the nuclear-located gene for mitochondrial L2 ribosomal protein in cereals.	Genome	49	275-81	2006		
32014	16582442	Ji HS,Chu SH,Jiang W,Cho YI,Hahn JH,Eun MY,McCouch SR,Koh HJ	Characterization and mapping of a shattering mutant in rice that corresponds to a block of domestication genes.	Genetics	173	995-1005	2006	SH-H	sh-h, OsSH-H, OsCPL1, CPL1
32015	16397796	Teixeira FK,Menezes-Benavente L,Galvao VC,Margis R,Margis-Pinheiro M	Rice ascorbate peroxidase gene family encodes functionally diverse isoforms localized in different subcellular compartments.	Planta.	224	300-14	2006	APX7,APX6,APX2,APX5,APX3,APX8,APX4,APX1	OsAPx7, OsAPx07, OSAPX7, APx7, sAPX,OsAPx6, OsAPx06, OSAPX6, APx6,OsAPX2, OsAPx02, APXb, OsAPx2, OSAPX2, APx2, cAPX, OsAPX1, APX1,OsAPx5, OsAPx05, OSAPX5, APx5,OsAPx3, OsAPx03, OSAPX3, APx3, mAPX,OsAPx8, OsAPx08, OSAPX8, APx8, OsAPX8,OsAPx4, OsAPx04, OSAPX4, APx4, pAPX4,OsAPX1, APXa, OsAPXa, OsAPx01, OsAPx1, OSAPX1, APx1, cAPX, APX2, cAPXa, OscAPXa
32016	16362329	Toyota K,Tamura M,Ohdan T,Nakamura Y	Expression profiling of starch metabolism-related plastidic translocator genes in rice.	Planta.	223	248-57	2006	PGLCT,PPT2,TPT1,MT,BT1-1,BT1-2,PPT4,GPT2-3,NTT2,NTT1,BT1-3,GPT1,TPT2,GPT2-2,GPT2-1,PPT1,PPT3	OsPGLCT, OspGlcT1, pGlcT1,OsPPT2,OsTPT1, TPT, tpt,OsMT, OsMEX1, MEX1,OsBT1-1, OsEnS-29, OsBT1, OsBt1, BT1, Bt1, OsBt1-1, shr3, OsBT1-2, BT1-2,OsBT1-2,OsPPT4,OsGPT2-3,OsNTT2,OsNTT1,OsBT1-3, SLA,OsGPT1, OsGPT2, GPT2,OsTPT2,OsGPT2-2,OsGPT2-1,OsPPT1,OsPPT3
32017	16272412	Gu XY,Kianian SF,Foley ME	Dormancy genes from weedy rice respond divergently to seed development environments.	Genetics	172	1199-211	2006		
32023	17086397	Seiji Murayama and Hirokazu Handa	Genes for alkaline/neutral invertase in rice: alkaline/neutral invertases are located in plant mitochondria and also in plastids.	Planta.	225	1193-1203	2007		
32024		Qiu-lin Qin, Jin-ge Liu, Zhen Zhang, Ri-he Peng, Ai-sheng Xiong, Quan-hong Yao  and Jian-min Chen 	Isolation, optimization, and functional analysis of the cDNA encoding transcription factor OsDREB1B in Oryza Sativa L.	Molecular Breeding	19	329-340	2007		
32025	17185738	Fatima Alkhalfioui, Michelle Renard and Fran?oise Montrichard	Unique properties of NADP-thioredoxin reductase C in legumes.	J. Exp. Bot.	58	969-78	2007		
32026		Jerome Bernier, Arvind Kumar, Venuprasad Ramaiah, Dean Spaner and Gary Atlin	A Large-Effect QTL for Grain Yield under Reproductive-Stage Drought Stress in Upland Rice 	Crop Sci.	 47, no. 2	507-518	2007		
32027	17364223	Yeon Jong Koo, Myeong Ae Kim, Eun Hye Kim, Jong Tae Song, Choonkyun Jung, Joon-Kwan Moon, Jeong-Han Kim, Hak Soo Seo, Sang Ik Song, Ju-Kon Kim, Jong Seob Lee, Jong-Joo Cheong and Yang Do Choi 	Overexpression of salicylic acid carboxyl methyltransferase reduces salicylic acid-mediated pathogen resistance in Arabidopsis thaliana.	Plant Mol. Biol.	64	1-15	2007		
32032	17389586	Agnes Lendvai, Aladar Pettko-Szandtner, Eva Csord?s-Toth, Pal Miskolczi, Gabor V. Horvath, Janos Gyorgyey and Denes Dudits	Dicot and monocot plants differ in retinoblastoma-related protein subfamilies.	J. Exp. Bot.	58	1663-75	2007	PIS1,RB1	Orysa;Rb2, RBR2, OsRBR1, RBR1, OsPIS1, RB2, OsRB2, RB1, OsRB1,Orysa;Rb1, OsRBR1, RBR1, OsRBR2, RBR2
32035		Virgilio C. Andaya and Thomas H. Tai	Fine mapping of the qCTS4 locus associated with seedling cold tolerance in rice (Oryza sativa L.).	Molecular Breeding	20	349-358	2007		
32037	17875553	Kimura, Atsuo	Function-unknown Glycoside Hydrolase Family 31 Proteins, mRNAs of which were Expressed in Rice Ripening and Germinating Stages, are a-Glucosidase and a-Xylosidase.	J. Biochem.	142	491-500	2007		
32049	18263782	Zhou J, Jiao F, Wu Z, Li Y, Wang X, He X, Zhong W, Wu P.	OsPHR2 Is Involved in Phosphate-Starvation Signaling and Excessive Phosphate Accumulation in Shoots of Plants.	Plant Physiol.	146(4)	1673-86.	2008	LTN1,PHR2,PAP10,PHR1	LTN1, OsPHO2, PHO2.1, PHO2.2, PHO2, OsUBC35, UBC35,OsPHR2, Os-PHR2,OsPAP10,OsPHR1
32050	18208525	Jun Fang, Chenglin Chai, Qian Qian, Chunlai Li, Jiuyou Tang, Lei Sun, Zejun Huang, Xiaoli Guo, Changhui Sun, Min Liu, Yan Zhang, Qingtao Lu, Yiqin Wang, Congming Lu, Bin Han, Fan Chen, Zhukuan Cheng, and Chengcai Chu	Mutations of genes in synthesis of the carotenoid precursors of ABA lead to pre-harvest sprouting and photo-oxidation in rice	Plant J.	54	177-189	2008	PHS3	OsCRTISO, MHZ5, MHZ5/CRTISO, CRTISO
32055	18266919	Atsushi Ishihara, Yumi Hashimoto, Chihiro Tanaka, Joseph G. Dubouzet, Takahito Nakao, Fumio Matsuda, Takaaki Nishioka, Hisashi Miyagawa and Kyo Wakasa 	The tryptophan pathway is involved in the defense responses of rice against pathogenic infection via serotonin production	Plant J.	54	481-495	2008		
32062	18680302	Wu, Mei-Li	Biosynthetic Mechanism of 2-Acetyl-1-pyrroline and Its Relationship with delta 1-Pyrroline-5-carboxylic Acid and Methylglyoxal in Aromatic Rice (Oryza sativa L.) Callus.	J. Agric. Food Chem.	56	7399-404	2008		
32063	18663452	Rajasekaran Sripriya, Vengoji Raghupathy and Karuppannan Veluthambi	Generation of selectable marker-free sheath blight resistant transgenic rice plants by efficient co-transformation of a cointegrate vector T-DNA and a binary vector T-DNA in one Agrobacterium tumefaciens strain.	Plant Cell Rep.	27	1635-44	2008		
32064	18679687	Gemma Pasquali, Stefano Biricolti, Franca Locatelli, Elena Baldoni and Monica Mattana	Osmyb4 expression improves adaptive responses to drought and cold stress in transgenic apples.	Plant Cell Rep.	27	1677-86	2008		
32066		Jing Li, Peng Xu, Xianneng Deng, Jiawu Zhou, Fengyi Hu, Jianmin Wan   and Dayun Tao	Identification of four genes for stable hybrid sterility and an epistatic QTL from a cross between Oryza sativa and Oryza glaberrima.	Euphytica	164	699-708	2008		
32067		Y. Xue , S. Q. Zhang, Q. H. Yao, R. H. Peng, A. S. Xiong, X. Li, W. M. Zhu, Y. Y. Zhu and D. S. Zha	Identification of quantitative trait loci for seed storability in rice (Oryza sativa L.).	Euphytica	164	739-744	2008		
32068		Yohei Koide, Mitsunobu Ikenaga, Yuhei Shinya, Kazuki Matsubara, Yoshio Sano	Two loosely linked genes controlling the female specificity for cross-incompatibility in rice.	Euphytica	164	753-760	2008	CIF1,CIF2,CIM,SUCIF	Cinf(t)*(Lcr), cinf(t), Cif, Lcr, Cinf,,cinm*, CINM, cim, cinm,SuCinf*, SUCINF, Su-Cif, Su Cinf
32069		Fan Na Kong, Jia Yu Wang, Ji Cheng Zou, Li Xue Shi, Min De Jin, Zheng Jin Xu  and Bin Wang	Molecular tagging and mapping of the erect panicle gene in rice	Molecular Breeding	19	297-304	2007	DEP1	OsDEP1, EP, qPE9-1, DN1, DEP1/DN1/qPE9-1, qNGR9, qDEP1, RGG4/DEP1/DN1/qPE9-1/OsGGC3, RGG4, OsDN1, OsGGC3, GGC3
32070		R. Naga Amrutha, P. Nataraj Sekhar, Rajeev K. Varshney and P.B. Kavi Kishor	Genome-wide analysis and identification of genes related to potassium transporter families in rice (Oryza sativa L.)	Plant Sci.	172(4)	708-721	2007	HAK21,HAK22,HAK7,HAK19,HAK20,HAK11,HAK10,HAK5,HAK6,HAK24,LCS,HAK9,HAK17,HAK18,HAK23,HAK16,HAK26,HAK2,HAK12,HAK13,HAK14,HAK15,HAK25,HAK8,HAK3,HAK4	OsHAK21,OsHAK22,OsHAK7,OsHAK19,OsHAK20,OsHAK11,OsHAK10,OsHAK5, FCO13, OsFCO13,OsHAK6, OsSTA42,OsHAK24,OsHAK1, HAK1,OsHAK9,OsHAK17, FCO3, FCO4,OsHAK18,OsHAK23,OsHAK16,OsHAK26,OsHAK2,OsHAK12,OsHAK13,OsHAK14,OsHAK15,OsHAK25,OsHAK8,OsHAK3,OsHAK4
32071	17876344	Li G, Lin F, Xue HW.	Genome-wide analysis of the phospholipase D family in Oryza sativa and functional characterization of PLD beta 1 in seed germination.	Cell Res	17(10)	881-94.	2007	NYC3,PLDkappa,PLDalpha1,PLDalpha6,PLDalpha4,PLDdelta3,NOL,PLDalpha5,PLDalpha8,PLDzeta1,PLDzeta2,PLDALPHA3,PLDbeta2,PLDdelta1,PLDbeta1,PLDalpha2,PLDvarphi,NHL2,NHL1,NHL3,PLDdelta2,HAK27,PLDalpha7	nyc3, OsNYC3, PPH,OsPLDkappa, OsC2DP12, C2DP12,RPLD1, PLD1, OsPLDalpha1, OsC2DP2, C2DP2,OsPLDalpha6, OsPLDeta1, OsPLDmu, OsC2DP31, C2DP31,OsPLDalpha4, RPLD3, OsPLDeta2, OsC2DP50, C2DP50,OsPLDdelta3, OsPLDnu2, OsC2DP61, C2DP61,nol, NOL1, OsNOL, OsNOL1,OsPLDalpha5, RPLD4, OsPLDeta3, OsC2DP51, C2DP51,OsPLDalpha8, OsPLDlambda, OsC2DP74, C2DP74,OsPLDzeta1, OsPLDrho1 ,OsPLDzeta2, OsPLDrho2,OsPLDalpha3, RPLD2, PLDalpha3, OsPLDeta1, PLD2, OsC2DP52, C2DP52,OsPLDbeta2, OsSTA86, OsC2DP27, C2DP27,OsPLDdelta1, OsPLDdelta, OsSTA233, OsC2DP77, C2DP77,OsPLDbeta1, OsC2DP79, C2DP79,OsPLDalpha2, OsC2DP43, C2DP43,OsPLDvarphi, spPLD, OsspPLD,,,,OsPLDdelta2, RPLD5, OsPLDnu1, OsC2DP33, C2DP33,OsHAK27,OsPLDalpha7, OsPLDtheta
32072		Jirapong Jairin , Kittiphong Phengrat, Sanguan Teangdeerith, Apichart Vanavichit and Theerayut Toojinda	Mapping of a broad-spectrum brown planthopper resistance gene, Bph3, on rice chromosome 6	Molecular Breeding	19	35-44	2007	BPH3	Bph3
32073	19767453	Kitajima A, Asatsuma S, Okada H, Hamada Y, Kaneko K, Nanjo Y, Kawagoe Y, Toyooka K, Matsuoka K, Takeuchi M, Nakano A, Mitsui T.	The rice alpha-amylase glycoprotein is targeted from the Golgi apparatus through the secretory pathway to the plastids.	Plant Cell	21(9)	2844-58.	2009	AMY3B,AMY3E,AMY3C,AMY3D,AMY1A	Amy3A/B/C*(RAmy3A/B/C), alpha Amy6, AmyII-5, AMY1.6, Amy1.6, Amy3B, BRAmy3A/B/C, Amy3A/B/C*, Amy6, RAmy3B, alphaAmy6-C, OsRamy3B, OsAmy3C,Amy3D/E*(RAmy3D/E), alpha Amy8, alphaAmy8, AmyII-3, AMY1.4, Amy3E, Amy3D/E*, RAmy3D/E, Amy9, RAmy3E, alphaAmy8-C, AMY3E/AMY1.4, OsAmy3E, OsRamy3E,Amy3A/B/C*(RAmy3A/B/C), AmyII-6, AMY1.7, Amy3C, RAmy3A/B/C, Amy3A/B/C*, Amy7, AMY3B, RAmy3C, OsAmy3B,Amy3D/E*(RAmy3D/E), alpha Amy3, AmyII-4, AMY1.3, Amy3D, Amy3D/E*, RAmy3D/E, Amy3D_E, Amy8, aAmy3, RAmy3D, OsAmy3D, alphaAmy3, OsRamy3D,Amy1A/C*(RAmy1A/C), alpha Amy7, AMY1.1, Amy1A, RAmy1A/C, Amy1A/C*, Amy1, Amy1A_C, OsAmy1A, alphaAmy7-C, RAmy1A, AmyI-1, OsAmyI-1, OsRamy1A
32074	14745172	Nanjo Y, Asatsuma S, Itoh K, Hori H, Mitsui T.	Proteomic identification of alpha-amylase isoforms encoded by RAmy3B/3C from germinating rice seeds.	Biosci. Biotechnol. Biochem.	68(1)	112-8.	2004	AMY3C,AMY3B	Amy3A/B/C*(RAmy3A/B/C), AmyII-6, AMY1.7, Amy3C, RAmy3A/B/C, Amy3A/B/C*, Amy7, AMY3B, RAmy3C, OsAmy3B,Amy3A/B/C*(RAmy3A/B/C), alpha Amy6, AmyII-5, AMY1.6, Amy1.6, Amy3B, BRAmy3A/B/C, Amy3A/B/C*, Amy6, RAmy3B, alphaAmy6-C, OsRamy3B, OsAmy3C
32075		Mitsui T, Itoh K.	The alpha-amylase multigene family.	Trends Plant Sci.	2(7)	255-261	1997	AMY3D,AMY3E	Amy3D/E*(RAmy3D/E), alpha Amy3, AmyII-4, AMY1.3, Amy3D, Amy3D/E*, RAmy3D/E, Amy3D_E, Amy8, aAmy3, RAmy3D, OsAmy3D, alphaAmy3, OsRamy3D,Amy3D/E*(RAmy3D/E), alpha Amy8, alphaAmy8, AmyII-3, AMY1.4, Amy3E, Amy3D/E*, RAmy3D/E, Amy9, RAmy3E, alphaAmy8-C, AMY3E/AMY1.4, OsAmy3E, OsRamy3E
32076	0	Bao,Y. and Ge,S.	Origin and phylogeny of Oryza species with the CD genome based on multiple-gene sequence data	Plant Syst. Evol.	249(1-2)	55-66	2004	_,_,ADH2,D1,_,ADH1	trnF(GAA), trnF, trnF-GAA,matK, ORF542 ,Adh2*, Adh2, OsADH2,d1, GPA1, GA1, OsGA1, RGA1, dwf1, XA7, RGA, D1/RGA1, D89, TGW5, OsTGW5, SRG5, OsSRG5,trnL(UAA), trnL, trnL-UAA,Adh1, Adh1/2, adh1/adh2, OsADH1
32078	0	Buder,G., Grossmann,C., Hundsdoerfer,A.K. and Klass,K.D.	A contribution to the phylogeny of the Ciidae and its relationships with other cucujoid and tenebrionoid beetles (Coleoptera: Cucujiformia)	Arthropod Syst Phylogeny	66(2)	165-190	2008		
32083	19651988	Huang,X.Y., Chao,D.Y., Gao,J.P., Zhu,M.Z., Shi,M. and Lin,H.X.	A previously unknown zinc finger protein, DST, regulates drought and salt tolerance in rice via stomatal aperture control	Genes Dev.	23(15)	1805-1817	2009	DST	OsDST, DLN102, OsDLN102, HST1, OsHST1
32085	19607808	Koo,S.C., Moon,B.C., Kim,J.K., Kim,C.Y., Sung,S.J., Kim,M.C., Cho,M.J. and Cheong,Y.H.	OsBWMK1 mediates SA-dependent defense responses by activating the transcription factor OsWRKY33	Biochem. Biophys. Res. Commun.	387(2)	365-370	2009	WRKY81,BWMK1	OsWRKY81, OsWRKY33,OsBWMK1, MPK12, MAPK1, OsMAPK1, OsMPK12, OsMPK17-1, MPK17-1, OsBWMK1L, OsBWMK1M, OsBWMK1S, OsMAPK17-1, MAPK17-1, MAPK12, OsMAPK12
32087	19825585	Luo,J.-J., Hao,W., Jin,J., Gao,J.-P. and Lin,H.-X.	Fine Mapping of Spr3, a Locus for Spreading Panicle from African Cultivated Rice (Oryza glaberrima Steud.)	Mol Plant	1(5)	830-838	2008	SPR3	Spr3(t), Spr3
32088	15016817	Majee,M., Maitra,S., Dastidar,K.G., Pattnaik,S., Chatterjee,A., Hait,N.C., Das,K.P. and Majumder,A.L.	A novel salt-tolerant L-myo-inositol-1-phosphate synthase from Porteresia coarctata (Roxb.) Tateoka, a halophytic wild rice: molecular cloning, bacterial overexpression, characterization, and functional introgression into tobacco-conferring salt tolerance phenotype	J. Biol. Chem.	279(27)	28539-28552	2004	_,INO1	PINO1, INO1,OsINO1, MIPS, IPS, RINO1, OsINO1-1, OsRINO1, OsMIPS1, MIPS1
32091	0	Rangan,L., Rout,A., Sudarshan,M. and Gregorio,G.	Molecular cloning, expression and mapping of the translational initiation factor eIF1 gene in Oryza sativa	Funct. Plant Biol.	36(5)	442-452	2009	_	GOS2, OseIF1, OsGOS2, SUI1, PtfS 
32092	19018609	Sungkaew,S., Stapleton,C.M., Salamin,N. and Hodkinson,T.R.	Non-monophyly of the woody bamboos (Bambuseae; Poaceae): a multi-gene region phylogenetic analysis of Bambusoideae s.s	J. Plant Res.	122(1)	95-108	2009	_,RPS16	matK, ORF542 ,rps16
32093	19543273	Sun,S.Y., Chao,D.Y., Li,X.M., Shi,M., Gao,J.P., Zhu,M.Z., Yang,H.Q., Luan,S. and Lin,H.X.	OsHAL3 mediates a new pathway in the light-regulated growth of rice	Nat. Cell Biol.	11(7)	845-851	2009	_,HIP1	OsHAL3, HAL3,OsHIP1, HAF1, OsHAF1,  OsRING275, RING275
32094	19506305	Takano-Kai,N., Jiang,H., Kubo,T., Sweeney,M., Matsumoto,T., Kanamori,H., Padhukasahasram,B., Bustamante,C., Yoshimura,A., Doi,K. and McCouch,S.	Evolutionary history of GS3, a gene conferring grain length in rice	Genetics	182(4)	1323-34	2009	LK3	lk3(t), lk3(t)*, SG3, GS3, SG3-GS3, OsGW3, OsGS3, RGG3/GS3/Mi/OsGGC1, RGG3, Mi, OsGGC1, GGC1, OsSYL3, SYL3, TT2, OsTT2
32096	19470578	Wang,K., Tang,D., Wang,M., Lu,J., Yu,H., Liu,J., Qian,B., Gong,Z., Wang,X., Chen,J., Gu,M. and Cheng,Z.	MER3 is required for normal meiotic crossover formation, but not for presynaptic alignment in rice	J. Cell Sci.	122(PT 12)	2055-2063	2009	RMC1	MER3, mer3, OsMER3, RCK, OsRCK, Os-MER3
32098	19556706	Yoshida,K. and Miyashita,N.T.	DNA polymorphism in the blast disease resistance gene Pita of the wild rice Oryza rufipogon and its related species	Genes Genet. Syst.	84(2)	121-136	2009	PITA	Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30, Trx30
32099	14504241	Matsubara K, Khin-Thidar, Sano Y.	A gene block causing cross-incompatibility hidden in wild and cultivated rice.	Genetics	165(1)	343-52.	2003	CIF1,CIM,SUCIF	Cinf(t)*(Lcr), cinf(t), Cif, Lcr, Cinf,cinm*, CINM, cim, cinm,SuCinf*, SUCINF, Su-Cif, Su Cinf
32100		Hidetaka Nishida, Hiromo Inoue, Yutaka Okumoto, Takatoshi Tanisaka	A Novel Gene ef1-h Conferring an Extremely Long Basic Vegetative Growth Period in Rice	Crop Sci.	42	348-354	2002		
32101	16539615	Li C, Zhou A, Sang T.	Genetic analysis of rice domestication syndrome with the wild annual species, Oryza nivara.	New Phytol.	170(1)	185-93.	2006	SH4,qSH8,qSH3	sh4, SH4, SHAT2, SHA1, qSH4, QSH4, OsSh4, Sh4, Osh4, OsMSL23, MSL23,sh8,
32102	19493335	Yang B,Jiang Y,Rahman MH,Deyholos MK,Kav NN	Identification and expression analysis of WRKY transcription factor genes in canola (Brassica napus L.) in response to fungal pathogens and hormone treatments.	BMC Plant Biol	9	68	2009		
32103	19495721	Yuan Q,Saito H,Okumoto Y,Inoue H,Nishida H,Tsukiyama T,Teraishi M,Tanisaka T	Identification of a novel gene ef7 conferring an extremely long basic vegetative  growth phase in rice.	Theor. Appl. Genet.	119(4)	675-84	2009	HD3B	Hd17, EF7, Ef7, OsELF3-1, ELF3-1, OsELF3, ELF3, ELF3_chr.6, OsELF3.1, ELF3.1, OsELF3a, ELF3a
32104	19502382	Fujiwara M,Hamada S,Hiratsuka M,Fukao Y,Kawasaki T,Shimamoto K	Proteome analysis of detergent-resistant membranes (DRMs) associated with OsRac1-mediated innate immunity in rice.	Plant Cell Physiol.	50(7)	1191-200	2009		
32105	19506306	Shang J,Tao Y,Chen X,Zou Y,Lei C,Wang J,Li X,Zhao X,Zhang M,Lu Z,Xu J,Cheng Z,Wan J,Zhu L	Identification of a new rice blast resistance gene, Pid3, by genomewide comparison of paired nucleotide-binding site--leucine-rich repeat genes and their pseudogene alleles between the two sequenced rice genomes.	Genetics	182(4)	1303-11	2009	PID3	Pi-d3, Pid3, Pi25, Pid3-I1, qBRM6.2
32106	19508361	Hao W,Zhu MZ,Gao JP,Sun SY,Lin HX	Identification of quantitative trait loci for rice quality in a population of chromosome segment substitution lines.	J. Integr. Plant Biol.	51(5)	500-12	2009		
32107	19515790	Leasure CD,Tong H,Yuen G,Hou X,Sun X,He ZH	ROOT UV-B SENSITIVE2 acts with ROOT UV-B SENSITIVE1 in a root ultraviolet B-sensing pathway.	Plant Physiol.	150(4)	1902-15	2009		
32108	19519802	Yamauchi T,Johzuka-Hisatomi Y,Fukada-Tanaka S,Terada R,Nakamura I,Iida S	Homologous recombination-mediated knock-in targeting of the MET1a gene for a maintenance DNA methyltransferase reproducibly reveals dosage-dependent spatiotemporal gene expression in rice.	Plant J.	60(2)	386-96	2009	MET1A	OsMET1a, OsMET1-1, MET1a, MET1-1, OsMET1, OsDMT702, DMT702
32109	19521518	Luan W,Chen H,Fu Y,Si H,Peng W,Song S,Liu W,Hu G,Sun Z,Xie D,Sun C	The effect of the crosstalk between photoperiod and temperature on the heading-date in rice.	PLoS One	4(6)	e5891	2009		
32110	19523506	Ma K,Xiao J,Li X,Zhang Q,Lian X	Sequence and expression analysis of the C3HC4-type RING finger gene family in rice.	Gene	444	33-45	2009		
32111	19529831	Xiao BZ,Chen X,Xiang CB,Tang N,Zhang QF,Xiong LZ	Evaluation of seven function-known candidate genes for their effects on improving drought resistance of transgenic rice under field conditions.	Mol Plant	2(1)	73-83	2009		
32112	19534828	Qiu D,Xiao J,Xie W,Cheng H,Li X,Wang S	Exploring transcriptional signalling mediated by OsWRKY13, a potential regulator  of multiple physiological processes in rice.	BMC Plant Biol	9	74	2009		
32113	19541604	Miura K,Agetsuma M,Kitano H,Yoshimura A,Matsuoka M,Jacobsen SE,Ashikari M	A metastable DWARF1 epigenetic mutant affecting plant stature in rice.	Proc. Natl. Acad. Sci. U.S.A.	106(27)	11218-23	2009		
32114	19542179	Arite T,Umehara M,Ishikawa S,Hanada A,Maekawa M,Yamaguchi S,Kyozuka J	d14, a strigolactone-insensitive mutant of rice, shows an accelerated outgrowth of tillers.	Plant Cell Physiol.	50(8)	1416-24	2009	D14	d14(d10), dwf13, d10, d14, D88, HTD2, OsHTD2, OsD14, qPPB3, D88/D14, HTD4
32115	19542298	Li RY,Ago Y,Liu WJ,Mitani N,Feldmann J,McGrath SP,Ma JF,Zhao FJ	The rice aquaporin Lsi1 mediates uptake of methylated arsenic species.	Plant Physiol.	150(4)	2071-80	2009	LSI2,LSI1	Lsi2, SIET1, OsLsi2, OsSIET1,lsi1, NIP2-1, OsNIP2;1, NIP2;1, OsLsi1, lsi(t), OsNIP2.1/OsLsi1/OsSIIT1, OsNIP2.1, NIP2.1
32116	19546322	Zhou Y,Zhu J,Li Z,Yi C,Liu J,Zhang H,Tang S,Gu M,Liang G	Deletion in a quantitative trait gene qPE9-1 associated with panicle erectness improves plant architecture during rice domestication.	Genetics	183(1)	315-24	2009	DEP1	OsDEP1, EP, qPE9-1, DN1, DEP1/DN1/qPE9-1, qNGR9, qDEP1, RGG4/DEP1/DN1/qPE9-1/OsGGC3, RGG4, OsDN1, OsGGC3, GGC3
32117	19556707	Ishikawa M,Ohmori Y,Tanaka W,Hirabayashi C,Murai K,Ogihara Y,Yamaguchi T,Hirano HY	The spatial expression patterns of DROOPING LEAF orthologs suggest a conserved function in grasses.	Genes Genet. Syst.	84	137-46	2009		
32118	19556711	Ishikawa R,Shinomura T,Takano M,Shimamoto K	Phytochrome dependent quantitative control of Hd3a transcription is the basis of  the night break effect in rice flowering.	Genes Genet. Syst.	84	179-84	2009		
32119	19561057	Jang YH,Park HY,Kim SK,Lee JH,Suh MC,Chung YS,Paek KH,Kim JK	Survey of rice proteins interacting with OsFCA and OsFY proteins which are homologous to the Arabidopsis flowering time proteins, FCA and FY.	Plant Cell Physiol.	50(8)	1479-92	2009		
32120	19561334	Frey N,Klotz J,Nick P	Dynamic bridges--a calponin-domain kinesin from rice links actin filaments and microtubules in both cycling and non-cycling cells.	Plant Cell Physiol.	50(8)	1493-506	2009		
32121	19566645	Wang Z,Hu H,Huang H,Duan K,Wu Z,Wu P	Regulation of OsSPX1 and OsSPX3 on expression of OsSPX domain genes and Pi-starvation signaling in rice.	J. Integr. Plant Biol.	51(7)	663-74	2009	LTN1,SPX3,SPX2,SPX6,SPX4,SPX5,MIR399D,MIR399J,IPS1,SPX1	LTN1, OsPHO2, PHO2.1, PHO2.2, PHO2, OsUBC35, UBC35,OsSPX3,OsSPX2,OsSPX6,OsSPX4, Os-SPX4,OsSPX5,OsmiR399d, osa-miR399d, osa-MIR399d, Os-miR399d, miR399d,OsmiR399j, osa-miR399j, osa-MIR399j, Os-miR399j, miR399j,OsIPS1,OsSPX1
32122	19567376	Yasuda H,Hirose S,Kawakatsu T,Wakasa Y,Takaiwa F	Overexpression of BiP has inhibitory effects on the accumulation of seed storage  proteins in endosperm cells of rice.	Plant Cell Physiol.	50(8)	1532-43	2009	PDIL1-1,BIP1	OsPDIL1;1, PDIL1;1, PDIL 1-1, PDI, OsPDIL1-1, OsTrx28, Trx28,OsBiP1, BiP1, BiP, Bip3, OsBiP3, BIP1/OsBIP3, OsMed37_2, Med37_2 
32123	19570592	Akiyama T,Jin S,Yoshida M,Hoshino T,Opassiri R,Ketudat Cairns JR	Expression of an endo-(1,3;1,4)-beta-glucanase in response to wounding, methyl jasmonate, abscisic acid and ethephon in rice seedlings.	J. Plant Physiol.	166(16)	1814-25	2009	GLN1,GNS1,GNS4,G1,_	OsGLN1,OsPR2, PR2, Gns1, OsGNS1, OsEGL1,OsPR2, PR2, Gns4, OsGns4, OsGLN2,Osg1, g1,OsEGL2
32124	19574435	Mitani N,Chiba Y,Yamaji N,Ma JF	Identification and characterization of maize and barley Lsi2-like silicon efflux  transporters reveals a distinct silicon uptake system from that in rice.	Plant Cell	21(7)	2133-42	2009		
32125	19587102	Seshadri S,Akiyama T,Opassiri R,Kuaprasert B,Cairns JK	Structural and enzymatic characterization of Os3BGlu6, a rice beta-glucosidase hydrolyzing hydrophobic glycosides and (1->3)- and (1->2)-linked disaccharides.	Plant Physiol.	151(1)	47-58	2009	BGLU6,BGLU7	Os3bglu6, Os3BGlu6, 3BGlu6,Os3bglu7, Os3BGlu7, 3BGLU7, BGlu7, BGlu1, bglu1
32126	19588119	Shan JX,Zhu MZ,Shi M,Gao JP,Lin HX	Fine mapping and candidate gene analysis of spd6, responsible for small panicle and dwarfness in wild rice (Oryza rufipogon Griff.).	Theor. Appl. Genet.	119(5)	827-36	2009	SPD6	OsSPD6, spd6, OrSPD6
32127	19593540	Yan HB,Pan XX,Jiang HW,Wu GJ	Comparison of the starch synthesis genes between maize and rice: copies, chromosome location and expression divergence.	Theor. Appl. Genet.	119(5)	815-25	2009		
32128	19603144	Gao Z,Qian Q,Liu X,Yan M,Feng Q,Dong G,Liu J,Han B	Dwarf 88, a novel putative esterase gene affecting architecture of rice plant.	Plant Mol. Biol.	71(3)	265-76	2009	_,KAI2,D14,D10,D27,D3,D17,OSH1,_,_	OsCDAP1, GID1L2,D14L, OsD14L, OsKAI2,d14(d10), dwf13, d10, d14, D88, HTD2, OsHTD2, OsD14, qPPB3, D88/D14, HTD4,d10(d15,d16), d16, d15, dwf9, d10, OsCCD8b, OsCCD8, CCD8, OsD10,d27(d t), dt, dwf23, d27, OsD27,d3, dwf3, D3/OsMAX2, Os_F0760, SOL1, OsORE9, ORE9, MAX2, OsRFPH2-10, RFPH2-10, OsD3,  OsFBL27, FBL27,d17(t), dwf14, d17, htd1, OsCCD7, CCD7, D17/HTD1, HTD1, OsHTD1, OsD17,OSKN1, Oskn1, OsKN1, OSH1/Oskn1, HB75,OsCDAP2,OsCDAP3
32129	19604382	Ngezahayo F,Xu C,Wang H,Jiang L,Pang J,Liu B	Tissue culture-induced transpositional activity of mPing is correlated with cytosine methylation in rice.	BMC Plant Biol	9	91	2009		
32130	19605414	Nakamura A,Fujioka S,Takatsuto S,Tsujimoto M,Kitano H,Yoshida S,Asami T,Nakano T	Involvement of C-22-hydroxylated brassinosteroids in auxin-induced lamina joint bending in rice.	Plant Cell Physiol.	50(9)	1627-35	2009	D61,BRD1,D11,D2,DWARF4,BRD2	d61*, dwf42, d61, OsBRI1, OSBRI1, BRI1, Os BRI1, Osbri1, OsBRKq1, BRKq1,brd1, OsDWARF, DWARF, OsBR6ox, BR6ox, CYP85A1, CYP85A4, OsDWF, CYP85A1/OsDWARF, OsBRD1, OsCYP85A1,d11(d8), dwf10, d8, D11/CYP724B1, d11, CYP724B1, GNS4, OsD11, PMM1, OsPMM1, PMM1/D11, NBG4, OsCPB1, CPB1, CPB1/D11,d2, dwf2, CYP90D2, D2/CYP90D2, OsD2, SMG11, OsSMG11, D2/SMG11, OsD2a, OsD2b,OsDWARF4, osdwarf4, OsDWF4, DWF4, CYP90B2, OsCYP90B2, D4, OsD4,brd2, OsBRD2, Dim/dwf1, Dim, dwf1, OsDWF1, DWF1, LTBSG1, OsLTBSG1, LHDD10, OsLHDD10, OsD-LDH3, D-LDH3
32131	19609685	Huang J,Zhao X,Yu H,Ouyang Y,Wang L,Zhang Q	The ankyrin repeat gene family in rice: genome-wide identification, classification and expression profiling.	Plant Mol. Biol.	71(3)	207-26	2009		
32132	19618278	Ye H,Du H,Tang N,Li X,Xiong L	Identification and expression profiling analysis of TIFY family genes involved in stress and phytohormone responses in rice.	Plant Mol. Biol.	71(3)	291-305	2009	TIFY11C,TIFY11G,TIFY6B,TIFY11D,TIFY11E,TIFY11F,TIFY6A,TIFY8,TIFY10B,GATA20,TIFY9,EG2,GATA17,GATA18 ,GATA19,TIFY10C,TIFY11A,TIFY11B,TIFY10A,TIFY5	OsJAZ2, JAZ2, OsJAZ 11, OsJAZ11, Os-JAZ11, JAZ11, OsTIFY11c, OsJAZ1, JAZ1,OsJAZ 15, OsJAZ15, OsTIFY11g,OsJAZ8, JAZ8, OsJAZ 4, OsJAZ4, JAZ4, OsTIFY6b, OsJAZ4-2, JAZ4-2. OsJAZ3, JAZ3,OsTIFY11d, OsJAZ1, JAZ1, OsJAZ 12, OsJAZ12, JAZ12,OsJAZ 13, OsJAZ13,JAZ13, OsTIFY11e, OsJAZ13a, OsJAZ13b, OsJAZ13c, OsJAZ13d,OsJAZ 14, OsJAZ14, JAZ14, OsTIFY11f,OsJAZ9, OsJAZ 3, OsJAZ3, JAZ9, JAZ3, OsTIFY6a,OsJAZ12, OsTIFY8, OsSTA75,OsJAZ6, OsJAZ 7, OsJAZ7, OsTIFY10B, JAZ6, JAZ7,OsTIFY2b, TIFY2B, OsCCT24, CCT24, OsGATA20,OsJAZ11, OsJAZ5, OsTIFY9, JAZ11, JAZ5, JAZ11/TIFY9 ,OsTIFY3, OsJAZ10, OsJAZ 1, OsJAZ1, JAZ1, EG2/OsJAZ1, EG2, JAZ1/EG2,OsTIFY2a, TIFY2a, OsCCT04, OsCCT4, CCT04, CCT4, OsGATA17, OsGATA17a, OsGATA17b,OsTIFY1A, TIFY1A, OsCCT13, OsGATA18, OsGATA18a, OsGATA18b,OsTIFY1b, TIFY1B, OsCCT15, CCT15, OsGATA19, OsGATA19a, OsGATA19b,OsJAZ7, JAZ7, OsJAZ 8, OsJAZ8, Os-JAZ8, JAZ8, OsTIFY10c, OsTIFY10c/OsJAZ8,OsJAZ3, JAZ3, OsJAZ 9, OsJAZ9, Os-JAZ9, JAZ9, OsTIFY11a, OsJAZ6, JAZ6,OsJAZ4, JAZ4, OsJAZ 10, OsJAZ10, JAZ10, OsTIFY11b,OsJAZ5, JAZ5, JAZ6, OsJAZ6, OsTIFY10A,OsJAZ 2, OsJAZ2, JAZ2, OsTIFY5, OsSTA188, OsJAZ5, JAZ5
32133	19619287	Winters A,Heywood S,Farrar K,Donnison I,Thomas A,Webb KJ	Identification of an extensive gene cluster among a family of PPOs in Trifolium pratense L. (red clover) using a large insert BAC library.	BMC Plant Biol	9	94	2009		
32134	19622530	Yun MS,Kawagoe Y	Amyloplast division progresses simultaneously at multiple sites in the endosperm  of rice.	Plant Cell Physiol.	50(9)	1617-26	2009		
32135	19635799	Okada A,Okada K,Miyamoto K,Koga J,Shibuya N,Nojiri H,Yamane H	OsTGAP1, a bZIP transcription factor, coordinately regulates the inductive production of diterpenoid phytoalexins in rice.	J. Biol. Chem.	284(39)	26510-8	2009	KS4,KS7,CPS4,MAS,CYP99A2,CYP99A3,BZIP37,DXS3	OsKS4, KS4, KSL4, OsKSL4, DTS2, OsDTS2, OsTPS16, TPS16, TPS8, OsTPS8,OsKS7, KS7, KSL7, OsKSL7, DTC1, OsDTC1, OsKS3, OsDTC1/OsKS7, OsTPS6, TPS6, TPS38, OsTPS38,OsCPS4, CYC1, OsCYC1, OsCyc1, cpsl3, OsCPSL3, OsCPSsyn, OsCyc1/OsCPS4, OsTPS15, Os-CPS4, TPS11, OsTPS11,OsMAS, MAS1, OsMAS1, OsMAS/SDR110C-MS1, SDR110C-MS1, OsSDR110C-MS1, OsMS1, MS1,OsCYP99A2,OsCYP99A3,OsTGAP1, TGAP1, OsbZIP37,OsDXS, OsDXS3, dxs3, DXS2, OsDXS2
32136	19648232	Tanaka A,Nakagawa H,Tomita C,Shimatani Z,Ohtake M,Nomura T,Jiang CJ,Dubouzet JG,Kikuchi S,Sekimoto H,Yokota T,Asami T,Kamakura T,Mori M	BRASSINOSTEROID UPREGULATED1, encoding a helix-loop-helix protein, is a novel gene involved in brassinosteroid signaling and controls bending of the lamina joint in rice.	Plant Physiol.	151(2)	669-80	2009	D61,BU1,BRD1,D1	d61*, dwf42, d61, OsBRI1, OSBRI1, BRI1, Os BRI1, Osbri1, OsBRKq1, BRKq1,ILI4, OsILI4 , OsBU1, BU1/ILI4, OsbHLH172, bHLH172,brd1, OsDWARF, DWARF, OsBR6ox, BR6ox, CYP85A1, CYP85A4, OsDWF, CYP85A1/OsDWARF, OsBRD1, OsCYP85A1,d1, GPA1, GA1, OsGA1, RGA1, dwf1, XA7, RGA, D1/RGA1, D89, TGW5, OsTGW5, SRG5, OsSRG5
32137	19649188	Oki K,Kitagawa K,Fujisawa Y,Kato H,Iwasaki Y	Function of alpha subunit of heterotrimeric G protein in brassinosteroid response of rice plants.	Plant Signal Behav	4(2)	126-8	2009		
32138	19653105	Yokotani N,Ichikawa T,Kondou Y,Maeda S,Iwabuchi M,Mori M,Hirochika H,Matsui M,Oda K	Overexpression of a rice gene encoding a small C2 domain protein OsSMCP1 increases tolerance to abiotic and biotic stresses in transgenic Arabidopsis.	Plant Mol. Biol.	71(4-5)	391-402	2009	SMCP1	OsSMCP1, OsC2DP58, C2DP58
32139	19656341	Zhou G,Qi J,Ren N,Cheng J,Erb M,Mao B,Lou Y	Silencing OsHI-LOX makes rice more susceptible to chewing herbivores, but enhances resistance to a phloem feeder.	Plant J.	60(4)	638-48	2009	_,LOX11	Lox2:Os:1, OsLOX9, LOX9, OsLOX8, LOX8, OsLOX2, LOX2, OsRLL, OsHI-LOX, HI-LOX, RLL2 LOX, RLL2, Lox2osPil, OsLOX2;1, LOX2;1, OsLOX1, OsLOX7, LOX7,OsLOX11, OsRCI-1, RCI-1, OsBphi262, OsLOX12, OsLOX2.2, LOX2.2, LOX2.1, OsLOX2.1, OsLOX14, LOX14
32140	19656904	Steffens B,Sauter M	Heterotrimeric G protein signaling is required for epidermal cell death in rice.	Plant Physiol.	151(2)	732-40	2009		
32141	19664599	Hu Y,Qin F,Huang L,Sun Q,Li C,Zhao Y,Zhou DX	Rice histone deacetylase genes display specific expression patterns and developmental functions.	Biochem. Biophys. Res. Commun.	388	266-71	2009	HDAC1,HDAC2,HDAC3	OsHDAC1, HDA702, OsHDA702, HDA1, OsHDA1, HDT702, OsHDT702,OsHDAC2, HDA710, OsHDA710 ,OsHDAC3, HDA703, OsHDA703
32142	19666483	Onda Y,Kumamaru T,Kawagoe Y	ER membrane-localized oxidoreductase Ero1 is required for disulfide bond formation in the rice endosperm.	Proc. Natl. Acad. Sci. U.S.A.	106(33)	14156-61	2009		
32143	19669727	Rahman ML,Jiang W,Chu SH,Qiao Y,Ham TH,Woo MO,Lee J,Khanam MS,Chin JH,Jeung JU,Brar DS,Jena KK,Koh HJ	High-resolution mapping of two rice brown planthopper resistance genes, Bph20(t)  and Bph21(t), originating from Oryza minuta.	Theor. Appl. Genet.	119(7)	1237-46	2009	BPH21,BPH20	Bph21(t),Bph20(t)
32144	19675157	Andres F,Galbraith DW,Talon M,Domingo C	Analysis of PHOTOPERIOD SENSITIVITY5 sheds light on the role of phytochromes in photoperiodic flowering in rice.	Plant Physiol.	151(2)	681-90	2009		
32145	19682283	Sazuka T,Kamiya N,Nishimura T,Ohmae K,Sato Y,Imamura K,Nagato Y,Koshiba T,Nagamura Y,Ashikari M,Kitano H,Matsuoka M	A rice tryptophan deficient dwarf mutant, tdd1, contains a reduced level of indole acetic acid and develops abnormal flowers and organless embryos.	Plant J.	60(2)	227-41	2009	TDD1,YUCCA1	OsTDD1, ASB1, OASB1, OsASbeta1, ASbeta1, TDD1/OASB1,OsYUCCA1, OsYUC1, YUC1
32146	19684243	Mugford ST,Qi X,Bakht S,Hill L,Wegel E,Hughes RK,Papadopoulou K,Melton R,Philo M,Sainsbury F,Lomonossoff GP,Roy AD,Goss RJ,Osbourn A	A serine carboxypeptidase-like acyltransferase is required for synthesis of antimicrobial compounds and disease resistance in oats.	Plant Cell	21(8)	2473-84	2009		
32147	19686374	Shi Y,Zhao S,Yao J	Premature tapetum degeneration: a major cause of abortive pollen development in photoperiod sensitive genic male sterility in rice.	J. Integr. Plant Biol.	51(8)	774-81	2009		
32148	19688299	Dai X,You C,Wang L,Chen G,Zhang Q,Wu C	Molecular characterization, expression pattern, and function analysis of the OsBC1L family in rice.	Plant Mol. Biol.	71(4-5)	469-81	2009	BC1L2,BC1L7,BC1L4,BC1L5,BC1L9,BC1L8,BC1L3,BC1L1,BC1L6	OsBC1L2, OsPCS4, PCS4,OsBC1L7, OsPCS6, PCS6,OsBC1L4, OsPCS7, PCS7,OsBC1L5, OsPCS11, PCS11,OsBC1L9, OsPCS2, PCS2,OsBC1L8, PCS12, OsPCS12,OsBC1L3, OsPCS14, PCS14,OsBC1L1, OsPCS13, PCS13,OsBC1L6, OsPCS8, PCS8
32149	19690613	Rohila JS,Chen M,Chen S,Chen J,Cerny RL,Dardick C,Canlas P,Fujii H,Gribskov M,Kanrar S,Knoflicek L,Stevenson B,Xie M,Xu X,Zheng X,Zhu JK,Ronald P,Fromm ME	Protein-protein interactions of tandem affinity purified protein kinases from rice.	PLoS One	4(8)	e6685	2009		
32150	19696351	Fukuoka S,Saka N,Koga H,Ono K,Shimizu T,Ebana K,Hayashi N,Takahashi A,Hirochika H,Okuno K,Yano M	Loss of function of a proline-containing protein confers durable disease resistance in rice.	Science	325	998-1001	2009	PI21	pi21, rMg40, OsHMP26, HMP26, OsHIPP5, HIPP5, OsaHIP05, HIP05 
32151	19697141	Zhang B,Deng L,Qian Q,Xiong G,Zeng D,Li R,Guo L,Li J,Zhou Y	A missense mutation in the transmembrane domain of CESA4 affects protein abundance in the plasma membrane and results in abnormal cell wall biosynthesis in rice.	Plant Mol. Biol.	71(4-5)	509-24	2009	BC7	OsCesA4, OsCESA4, CESA4, OS_CESA04, BC11, bc7t, Bc7(t), bc-7, OsCesA 4, CesA4, FC17/CESA4, FC17, OsFC17
32152	19700558	Tao Z,Liu H,Qiu D,Zhou Y,Li X,Xu C,Wang S	A pair of allelic WRKY genes play opposite roles in rice-bacteria interactions.	Plant Physiol.	151(2)	936-48	2009	AOS2,PR1B,WRKY45,PAL1,ICS1,WRKY13,NH1,PAD4,_,PR1A	OsAOS2, CYP74A2, OsAOS, OsAOS1,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1, OsPR1a, PR1a,OsWRKY45, OsWRKY45-1, OsWRKY45-2, WRKY45-1, WRKY45-2,OsPAL, Pal1*, Pal1, PAL, Pal_1, PalI, PAL2, OsPAL01, PAL01, OSPAL, CP-1, GP-1, OsPAL1, PAL3, OsPAL3,OsICS1, OsICS, ICS,OsWRKY13,OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2, DLN5, OsDLN5,  OsBTBA1, BTBA1,OsPAD4,Lox2:Os:1, OsLOX9, LOX9, OsLOX8, LOX8, OsLOX2, LOX2, OsRLL, OsHI-LOX, HI-LOX, RLL2 LOX, RLL2, Lox2osPil, OsLOX2;1, LOX2;1, OsLOX1, OsLOX7, LOX7,OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1, OsPR1b, PR1alpha, OsPR1alpha
32153	19700562	Kant S,Bi YM,Zhu T,Rothstein SJ	SAUR39, a small auxin-up RNA gene, acts as a negative regulator of auxin synthesis and transport in rice.	Plant Physiol.	151(2)	691-701	2009	SAUR39	OsSAUR39
32154	19701685	Qin Y,Ye H,Tang N,Xiong L	Systematic identification of X1-homologous genes reveals a family involved in stress responses in rice.	Plant Mol. Biol.	71(4-5)	483-96	2009		
32155	19702667	Gao D,Gill N,Kim HR,Walling JG,Zhang W,Fan C,Yu Y,Ma J,SanMiguel P,Jiang N,Cheng Z,Wing RA,Jiang J,Jackson SA	A lineage-specific centromere retrotransposon in Oryza brachyantha.	Plant J.	60(5)	820-31	2009	FRETRO2,FRETRO1,FRETRO3,FRETRO4,FRETRO5,RIRE2	FRetro2,FRetro1,FRetro3,FRetro4,FRetro5,RIRE2, Osr26, Rire2, Retrosat2
32156	19702669	Wu J,Fujisawa M,Tian Z,Yamagata H,Kamiya K,Shibata M,Hosokawa S,Ito Y,Hamada M,Katagiri S,Kurita K,Yamamoto M,Kikuta A,Machita K,Karasawa W,Kanamori H,Namiki N,Mizuno H,Ma J,Sasaki T,Matsumoto T	Comparative analysis of complete orthologous centromeres from two subspecies of rice reveals rapid variation of centromere organization and structure.	Plant J.	60(5)	805-19	2009		
32157	19706531	Kovach MJ,Calingacion MN,Fitzgerald MA,McCouch SR	The origin and evolution of fragrance in rice (Oryza sativa L.).	Proc. Natl. Acad. Sci. U.S.A.	106(34)	14444-9	2009	SK2(T)(SCL, FGR)	sk2(t)(scl, fgr), fgr, scl, BAD2, BADH2, sk2, OsBADH2, Badh2, badh2, Os2AP, BADH-2, OsALDH10A8, ALDH10A8 
32158	19706555	Takano M,Inagaki N,Xie X,Kiyota S,Baba-Kasai A,Tanabata T,Shinomura T	Phytochromes are the sole photoreceptors for perceiving red/far-red light in rice.	Proc. Natl. Acad. Sci. U.S.A.	106(34)	14705-10	2009	SE5,PHYB,LHD3,PHYA,RBCS,LHCB2.1	Se5, OsHO1, OsHO-1, OsHY1, HO-1, HO1, OsSE5, YGL2, YGL2/HO1,phyB, PHYB1, OsPHYB, OsphyB, OsYHB, YHB, OsPHYB/OsYHB,PHYC, OsPHYC, OsPHYCa, OsPHYCb, OsLHD3,phyA, PHYA* (phyA), PHYA*, Phya, PHY18, phy 18, OsPHYA ,rbcS, OsRbcS, RBCS-C, RbcS2, OsRBCS2, RbcS1, OsRbcS2, OsrbcS1,LHCB, LHCP II, Lhcb2, OsLhcb2, Lhcb2.1, OsLhcb2.1 
32159	19711051	Shan XH,Ou XF,Liu ZL,Dong YZ,Lin XY,Li XW,Liu B	Transpositional activation of mPing in an asymmetric nuclear somatic cell hybrid  of rice and Zizania latifolia was accompanied by massive element loss.	Theor. Appl. Genet.	119(7)	1325-33	2009		
32160	19714920	Guo Y,Song Y	Differential proteomic analysis of apoplastic proteins during initial phase of salt stress in rice.	Plant Signal Behav	4(2)	121-2	2009		
32161	19717618	Wang F,Zhu D,Huang X,Li S,Gong Y,Yao Q,Fu X,Fan LM,Deng XW	Biochemical insights on degradation of Arabidopsis DELLA proteins gained from a cell-free assay system.	Plant Cell	21(8)	2378-90	2009		
32162	19720627	Suzuki Y,Nakabayashi K,Yoshizawa R,Mae T,Makino A	Differences in expression of the RBCS multigene family and rubisco protein content in various rice plant tissues at different growth stages.	Plant Cell Physiol.	50(10)	1851-5	2009		
32163	19723240	Ma L,Bao J,Guo L,Zeng D,Li X,Ji Z,Xia Y,Yang C,Qian Q	Quantitative trait Loci for panicle layer uniformity identified in doubled haploid lines of rice in two environments.	J. Integr. Plant Biol.	51(9)	818-24	2009		
32164	19723241	Liu WY,Wang MM,Huang J,Tang HJ,Lan HX,Zhang HS	The OsDHODH1 gene is involved in salt and drought tolerance in rice.	J. Integr. Plant Biol.	51(9)	825-33	2009	DHODH1	OsDHODH1, OsDHPD, DHPD
32165	19723247	Hu SP,Zhou Y,Zhang L,Zhu XD,Li L,Luo LJ,Liu GL,Zhou QM	Correlation and quantitative trait loci analyses of total chlorophyll content and photosynthetic rate of rice (Oryza sativa) under water stress and well-watered conditions.	J. Integr. Plant Biol.	51(9)	879-88	2009		
32166	19723322	Itoh N,Toda H,Matsuda M,Negishi T,Taniguchi T,Ohsawa N	Involvement of S-adenosylmethionine-dependent halide/thiol methyltransferase (HTMT) in methyl halide emissions from agricultural plants: isolation and characterization of an HTMT-coding gene from Raphanus sativus (daikon radish).	BMC Plant Biol	9	116	2009		
32167	19727653	Xu JH,Messing J	Amplification of prolamin storage protein genes in different subfamilies of the Poaceae.	Theor. Appl. Genet.	119(8)	1397-412	2009		
32168	19729221	Taheri P,Tarighi S	Riboflavin induces resistance in rice against Rhizoctonia solani via jasmonate-mediated priming of phenylpropanoid pathway.	J. Plant Physiol.	167(3)	201-8	2010		
32169	20131478	Sanan-Mishra N,Kumar V,Sopory SK,Mukherjee SK	Cloning and validation of novel miRNA from basmati rice indicates cross talk between abiotic and biotic stresses.	Mol. Genet. Genomics	282(5)	463-474	2009		
32170	19734433	Yamaji N,Ma JF	A transporter at the node responsible for intervascular transfer of silicon in rice.	Plant Cell	21(9)	2878-83	2009	LSI6	Lsi6, OsNIP2;2, NIP2-2, OsLsi6, OsNIP2.2/OsLsi6, OsNIP2.2, NIP2.2
32171	19737364	Kobayashi T,Itai RN,Ogo Y,Kakei Y,Nakanishi H,Takahashi M,Nishizawa NK	The rice transcription factor IDEF1 is essential for the early response to iron deficiency, and induces vegetative expression of late embryogenesis abundant genes.	Plant J.	60(6)	948-61	2009	NAS3,YSL15,NAS2,ABI3,NAS1,IRT1,DMAS1,YSL2,IRO2	OsNAS3,OsYSL15, OsYs7,OsNAS2, OsNAS1,OsLFL2, LFL2, OsIDEF1, IDEF1, OsABI3,OsNAS1,OsIRT1, ZIP10, OsZIP10, OsZIP12, ZIP12,OsDMAS1, OsAKR5, AKR5,OsYSL2, Os-YSL2, OsYs6 ,OsIRO2, OsbHLH056, bHLH056, bHLH56, OsbHLH56
32172	19745569	Sunohara H,Kawai T,Shimizu-Sato S,Sato Y,Sato K,Kitano H	A dominant mutation of TWISTED DWARF 1 encoding an alpha-tubulin protein causes severe dwarfism and right helical growth in rice.	Genes Genet. Syst.	84	209-18	2009	TID1	OsTID1, TubA2, SRS5, OS-TubA2, OsTubA2, OsSRS5, 
32173	19749151	Reinheimer R,Kellogg EA	Evolution of AGL6-like MADS box genes in grasses (Poaceae): ovule expression is ancient and palea expression is new.	Plant Cell	21(9)	2591-605	2009	MFO1,COG1	OsMADS6, MADS6, OsMFO1,OsMADS17, MADS17, NMADS3, RMADS213, nmads3
32174	19751706	Huang J,Sun SJ,Xu DQ,Yang X,Bao YM,Wang ZF,Tang HJ,Zhang H	Increased tolerance of rice to cold, drought and oxidative stresses mediated by the overexpression of a gene that encodes the zinc finger protein ZFP245.	Biochem. Biophys. Res. Commun.	389	556-61	2009	P5CS,ZFP245	OsP5CS, P5CS1, OsP5CS1, OsALDH18B1, ALDH18B1, OsP5CS-1, P5CS-1,OsZFP245, DLN192, OsDLN192, ZOS7-08, OsZOS7-08
32175	19756471	Piao R,Jiang W,Ham TH,Choi MS,Qiao Y,Chu SH,Park JH,Woo MO,Jin Z,An G,Lee J,Koh HJ	Map-based cloning of the ERECT PANICLE 3 gene in rice.	Theor. Appl. Genet.	119(8)	1497-506	2009	EP3	EP3/LP, LP, OsLP, OsFbox076, OsFbox76, Os_F0106, OsEP3,  OsFBK5, FBK5
32176	19763843	Liu Q,Zhang Q,Burton RA,Shirley NJ,Atwell BJ	Expression of vacuolar H(+)-pyrophosphatase (OVP3) is under control of an anoxia-inducible promoter in rice.	Plant Mol. Biol.	72(1-2)	47-60	2010	OVP3	OsOVP3
32177	19765235	Li M,Xiong G,Li R,Cui J,Tang D,Zhang B,Pauly M,Cheng Z,Zhou Y	Rice cellulose synthase-like D4 is essential for normal cell-wall biosynthesis and plant growth.	Plant J.	60(6)	1055-69	2009	ND1,CSLD2,CSLD5,CSLD3	CSLD4, OsCSLD4, OsCD1, CD1, DNL3, OsDNL3, NRL1, OsNRL1, SPO1, OsSPO1, SPO1/OsCSLD4,OsCSLD2,OsCSLD5,OsCSLD3
32178	19768557	Gollan PJ,Bhave M	Genome-wide analysis of genes encoding FK506-binding proteins in rice.	Plant Mol. Biol.	72(1-2)	1-16	2010		
32179	19772648	Berri S,Abbruscato P,Faivre-Rampant O,Brasileiro AC,Fumasoni I,Satoh K,Kikuchi S,Mizzi L,Morandini P,Pe ME,Piffanelli P	Characterization of WRKY co-regulatory networks in rice and Arabidopsis.	BMC Plant Biol	9	120	2009	WRKY4,WRKY34,WRKY17,WRKY37,WRKY28,WRKY40,WRKY62,WRKY106,WRKY69,WRKY117,WRKY112,WRKY118,WRKY71,WRKY121,WRKY25,WRKY107,WRKY41,WRKY116,WRKY21,WRKY111,WRKY19,WRKY46,SGSD3,WRKY8,WRKY74,WRKY26,WRKY32,WRKY14,WRKY90,WRKY35,WRKY73,WRKY1,WRKY15,WRKY13,WRKY55,WRKY45,WRKY94,WRKY23,WRKY70,WRKY2,WRKY27,WRKY72,WRKY104,WRKY10,WRKY42,WRKY119,WRKY114,WRKY57,WRKY75,WRKY11,WRKY51,WRKY30,WRKY76,WRKY16,WRKY58,WRKY29,WRKY52,WRKY3,WRKY80,WRKY24,WRKY56,WRKY31,WRKY82,WRKY39,WRKY65,WRKY60,WRKY96,WRKY95,WRKY20,WRKY54,WRKY81,WRKY105,WRKY115,WRKY9,WRKY22,WRKY67,WRKY6,WRKY108,WRKY66,WRKY53,WRKY79,WRKY109,WRKY64,WRKY113,WRKY50,WRKY7,WRKY87,WRKY89,WRKY49,WRKY84,WRKY61,WRKY47,WRKY77,WRKY102,WRKY48,WRKY5,WRKY68,WRKY18,WRKY88,WRKY43,WRKY12,WRKY110	OsWRKY4, WRKY122, OsWRKY122,OsWRKY34,OsWRKY17,OsWRKY37,OsWRKY28, DLN170, OsDLN170,OsWRKY40,OsWRKY62, OsWRKY62.1, OsWRKY62.2, XB10, OsWRKY62-1, OsWRKY62-2,OsWRKY106,OsWRKY69,OsWRKY117, DLN205, OsDLN205,OsWRKY112,OsWRKY118,OsWRKY71, WRKY-71,OsWRKY121,OsWRKY25, OsWRKY44, WRKY44,OsWRKY107,OsWRKY41, WRKY63, OsWRKY63,OsWRKY116,OsWRKY21,OsWRKY111,OsWRKY19,OsWRKY46, WRKY91, OsWRKY91,OsWRKY36, WRKY36, OsSGSD3,OsWRKY8,OsWRKY74,OsWRKY26, OsWRKY59, DLN19, OsDLN19,OsWRKY32,OsWRKY14,OsWRKY90,OsWRKY35,OsWRKY73,OsWRKY1, OsWRKY1v2,OsWRKY15,OsWRKY13,OsWRKY55,OsWRKY45, OsWRKY45-1, OsWRKY45-2, WRKY45-1, WRKY45-2,OsWRKY94,OsWRKY23,OsWRKY70,OsWRKY2,OsWRKY27,OsWRKY72, WRKY-72,OsWRKY104, CRPG32, OsCRPG32,OsWRKY10,OsWRKY42, WRKY-42,OsWRKY119,OsWRKY114,OsWRKY57,OsWRKY75,OsWRKY11, Dlf1, OsWRKY11.1, OsWRKY11.2,OsWRKY51,OsWRKY30,OsWRKY76, OsWRKY76.1, OsWRKY76.2, OsWRKY76.3,OsWRKY16,OsWRKY58,OsWRKY29,OsWRKY52,OsWRKY3 ,OsWRKY80,OsWRKY24,OsWRKY56,OsWRKY31,OsWRKY82,OsWRKY39,OsWRKY65,OsWRKY60,OsWRKY96,OsWRKY95,OsWRKY20,OsWRKY54,OsWRKY81, OsWRKY33,OsWRKY105,OsWRKY115,OsWRKY9,OsWRKY22,OsWRKY67,OsWRKY6, WRKY-6, DLN103, OsDLN103,OsWRKY108,OsWRKY66,OsWRKY53, WRKY-53,OsWRKY79, WRKY-79,OsWRKY109,OsWRKY64,OsWRKY113,OsWRKY50,OsWRKY7,OsWRKY87, OsSUSIBA2-like,OsWRKY89,OsWRKY49,OsWRKY84,OsWRKY61, OsWRKY103, WRKY103,OsWRKY47,OsWRKY77, WRKY-77,OsWRKY102,OsWRKY48,OsWRKY5 ,OsWRKY68,OsWRKY18,OsWRKY88,OsWRKY43,OsWRKY12,OsWRKY110
32180	19776160	Zhang SW,Li CH,Cao J,Zhang YC,Zhang SQ,Xia YF,Sun DY,Sun Y	Altered architecture and enhanced drought tolerance in rice via the down-regulation of indole-3-acetic acid by TLD1/OsGH3.13 activation.	Plant Physiol.	151(4)	1889-901	2009	TLD1	OsGH3-13, GH3-13, TLD1/OsGH3.13, TLD1, OsGH3.13, TLD2
32181	19778402	Wei XJ,Jiang L,Xu JF,Liu X,Liu SJ,Zhai HQ,Wan JM	The distribution of japonica rice cultivars in the lower region of the Yangtze River valley is determined by its photoperiod-sensitivity and heading date genotypes.	J. Integr. Plant Biol.	51(10)	922-32	2009		
32182	19778404	Zhao FY,Liu W,Zhang SY	Different responses of plant growth and antioxidant system to the combination of  cadmium and heat stress in transgenic and non-transgenic rice.	J. Integr. Plant Biol.	51(10)	942-50	2009		
32183	19798512	Hiraga S,Sasaki K,Hibi T,Yoshida H,Uchida E,Kosugi S,Kato T,Mie T,Ito H,Katou S,Seo S,Matsui H,Ohashi Y,Mitsuhara I	Involvement of two rice ETHYLENE INSENSITIVE3-LIKE genes in wound signaling.	Mol. Genet. Genomics	282(5)	517-29	2009	EIL4,EIL5,EIL6,EIL3,EIL2,EIL1	OsEIL4,OsEIL5,OsEIL6,OsEIL3,OsEIL2,OsEIL1, EIN3, OsEIN3, MHZ6, OsEIL1a, EIL1a, OsEIL1b, EIL1b
32184	19807881	Ji H,Kim SR,Kim YH,Kim H,Eun MY,Jin ID,Cha YS,Yun DW,Ahn BO,Lee MC,Lee GS,Yoon UH,Lee JS,Lee YH,Suh SC,Jiang W,Yang JI,Jin P,McCouch SR,An G,Koh HJ	Inactivation of the CTD phosphatase-like gene OsCPL1 enhances the development of  the abscission layer and seed shattering in rice.	Plant J.	61(1)	96-106	2010	SH-H	sh-h, OsSH-H, OsCPL1, CPL1
32185	19808806	Nakamura H,Muramatsu M,Hakata M,Ueno O,Nagamura Y,Hirochika H,Takano M,Ichikawa H	Ectopic overexpression of the transcription factor OsGLK1 induces chloroplast development in non-green rice cells.	Plant Cell Physiol.	50(11)	1933-49	2009	GLK1,RBCS4,SIG6,_,SIG2B,SIG5,YGL13,RPOTP,GLK2	OsGLK1, OsGlk1, GLK1,RbcS, RbcS4, OsRBCS4, OsRbcS4,OsSIG6, OsSig6,GADPH, OsGAPDHB, GAPDHB, OsGAPB, GAPB,OsSIG2B,OsSIG5, OsSig5, Os Sig5,OsSIG1, SIG1, Os-SigA, OsSigA, Os Sig1, SIGA,OsRpo Tp, OsRpoTp, NEP, RpoTp, rpoTP2,OsGLK2, OsGlk2
32186	19808807	Endo M,Tsuchiya T,Hamada K,Kawamura S,Yano K,Ohshima M,Higashitani A,Watanabe M,Kawagishi-Kobayashi M	High temperatures cause male sterility in rice plants with transcriptional alterations during pollen development.	Plant Cell Physiol.	50(11)	1911-22	2009		
32187	19812064	Aohara T,Kotake T,Kaneko Y,Takatsuji H,Tsumuraya Y,Kawasaki S	Rice BRITTLE CULM 5 (BRITTLE NODE) is involved in secondary cell wall formation in the sclerenchyma tissue of nodes.	Plant Cell Physiol.	50(11)	1886-97	2009	BC5	bc5, bn, bc-5
32188	19812186	Chang Y,Gong L,Yuan W,Li X,Chen G,Li X,Zhang Q,Wu C	Replication protein A (RPA1a) is required for meiotic and somatic DNA repair but  is dispensable for DNA replication and homologous recombination in rice.	Plant Physiol.	151(4)	2162-73	2009	RPA1A	OsRPA70a, OsRPA1a, RPA1a
32189	19816106	Matsuda T,Kuramata M,Takahashi Y,Kitagawa E,Youssefian S,Kusano T	A novel plant cysteine-rich peptide family conferring cadmium tolerance to yeast  and plants.	Plant Signal Behav	4(5)	419-21	2009	CDT1	OsCDT1, OsCCX2, CCX2, OsNCX8, NCX8
32190	19816108	Cho K,Agrawal GK,Jwa NS,Shibato J,Torres NL,Kubo A,Rakwal R	Rice OsSIPK: a central component of ozone-triggered physiological responses.	Plant Signal Behav	4(5)	448-50	2009		
32191	19816111	Tong H,Chu C	Roles of DLT in fine modulation on brassinosteroid response in rice.	Plant Signal Behav	4(5)	438-9	2009		
32192	19816140	Miwa H,Tamaki T,Fukuda H,Sawa S	Evolution of CLE signaling: origins of the CLV1 and SOL2/CRN receptor diversity.	Plant Signal Behav	4(6)	477-81	2009		
32193	19820190	Ohmori S,Kimizu M,Sugita M,Miyao A,Hirochika H,Uchida E,Nagato Y,Yoshida H	MOSAIC FLORAL ORGANS1, an AGL6-like MADS box gene, regulates floral organ identity and meristem fate in rice.	Plant Cell	21(10)	3008-25	2009	MFO1,COG1	OsMADS6, MADS6, OsMFO1,OsMADS17, MADS17, NMADS3, RMADS213, nmads3
32194	19820307	Chung PJ,Kim JK	Epigenetic interaction of OsHDAC1 with the OsNAC6 gene promoter regulates rice root growth.	Plant Signal Behav	4(7)	675-7	2009	NAC6,HDAC1	OsNAC6, ONAC048, NAC48, SNAC2, SNAC2/OsNAC6, OsNAC6/ONAC048, OsSNAC2, SNAC-2, OsSNAC-2, OsNAC2,OsHDAC1, HDA702, OsHDA702, HDA1, OsHDA1, HDT702, OsHDT702
32195	19820313	Goh CH	Phototropins and chloroplast activity in plant blue light signaling.	Plant Signal Behav	4(8)	693-5	2009		
32196	19820319	Kim YS,Kim JK	Rice transcription factor AP37 involved in grain yield increase under drought stress.	Plant Signal Behav	4(8)	735-6	2009		
32197	19820348	Taga Y,Takai R,Kaneda T,Matsui H,Isogai A,Che FS	Role of OsHSP90 and IREN, Ca2+ dependent nuclease, in plant hypersensitive cell death induced by transcription factor OsNAC4.	Plant Signal Behav	4(8)	740-2	2009	NAC4,IREN,HSP90	OsNAC4, NAC68, ONAC068, OnNAC4*, OnNAC4, OsNAC4/ONAC068,,OsHsp90, rHSP90, OsHSP90, GRP94, OsGRP94
32198	19822337	Takashima S,Seino J,Nakano T,Fujiyama K,Tsujimoto M,Ishida N,Hashimoto Y	Analysis of CMP-sialic acid transporter-like proteins in plants.	Phytochemistry	70(17-18)	1973-81	2009		
32199	19822730	Lee S,Costanzo S,Jia Y,Olsen KM,Caicedo AL	Evolutionary dynamics of the genomic region around the blast resistance gene Pi-ta in AA genome oryza species.	Genetics	183(4)	1315-25	2009	PITA	Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30, Trx30
32200	19822732	Ducrocq S,Giauffret C,Madur D,Combes V,Dumas F,Jouanne S,Coubriche D,Jamin P,Moreau L,Charcosset A	Fine mapping and haplotype structure analysis of a major flowering time quantitative trait locus on maize chromosome 10.	Genetics	183(4)	1555-63	2009		
32201	19823935	Gu XY,Liu T,Feng J,Suttle JC,Gibbons J	The qSD12 underlying gene promotes abscisic acid accumulation in early developing seeds to induce primary dormancy in rice.	Plant Mol. Biol.	73(1-2)	97-104	2010		
32202	19825616	Chibani K,Wingsle G,Jacquot JP,Gelhaye E,Rouhier N	Comparative genomic study of the thioredoxin family in photosynthetic organisms with emphasis on Populus trichocarpa.	Mol Plant	2(2)	308-22	2009		
32203	19825651	Luo M,Platten D,Chaudhury A,Peacock WJ,Dennis ES	Expression, imprinting, and evolution of rice homologs of the polycomb group genes.	Mol Plant	2(4)	711-23	2009	EMF2A,IEZ1,CLF,FIE1,FIE2,EMF2B	OsEMF2a, OsEMF2, EMF2, ZOS4-02, OsZOS4-02,OsiEZ1, OsSET1, SET1, iEZ1, OsEZ1/OsiEZ1, OsEZ1, EZ1, ez1, OsSET15, SDG718, DLN84, OsDLN84,OsSET24, SDG711, EZ1, OsCLF, OsSDG711,OsFIE1, OsWD40-154, OsEnS-116, OsFIE1/OsWD40-154, WD40-154 ,OsFIE2, FIE, OsWD40-153,  OsDWD46, DWD46,OsEMF2b, EMF2b, GW9, OsGW9, GW9/OsEMF2b 
32204	19825657	Wang JR,Hu H,Wang GH,Li J,Chen JY,Wu P	Expression of PIN genes in rice (Oryza sativa L.): tissue specificity and regulation by hormones.	Mol Plant	2(4)	823-31	2009	PIN9,PIN4,PIN5B,PIN1C,PIN5A,PIN10B,PIN1A,PIN1D,PIN5C,LRA1,PIN1B,PIN10A,PIN8	OsPIN9,OsPIN4,PIN5C, OsPIN5c, OsPIN5b, PIN4,PIN1B, OsPIN1B, OsPIN1b, OsPIN1c,OsPIN5a, OsPIN6,PIN3B, OsPIN3b, OsPIN10b,PIN1C, OsPIN1C, OsPIN1c, OsPIN1a,OsPIN1D, OsPIN1d,PIN5B, OsPIN5b, OsPIN5c,OsPIN2, PIN2, OsLRA1, WAR1, OsWAR1,PIN1A, OsPIN1A, OsPIN1a, REH1, OsPIN1, OsPIN1b, REH1/OsPIN1,PIN3A, OsPIN3a, OsPIN3t, OsPIN10a, OsPIN3,OsPIN8
32205	19825675	Caffall KH,Pattathil S,Phillips SE,Hahn MG,Mohnen D	Arabidopsis thaliana T-DNA mutants implicate GAUT genes in the biosynthesis of pectin and xylan in cell walls and seed testa.	Mol Plant	2(5)	1000-14	2009		
32206	19825680	Ishimaru Y,Bashir K,Fujimoto M,An G,Itai RN,Tsutsumi N,Nakanishi H,Nishizawa NK	Rice-specific mitochondrial iron-regulated gene (MIR) plays an important role in  iron homeostasis.	Mol Plant	2(5)	1059-66	2009	MIR	OsMIR
32207	19825834	Swaminathan S,Morrone D,Wang Q,Fulton DB,Peters RJ	CYP76M7 is an ent-cassadiene C11alpha-hydroxylase defining a second multifunctional diterpenoid biosynthetic gene cluster in rice.	Plant Cell	21(10)	3315-25	2009	KS4,KS8,CYP76M10,CYP71Z3,CYP76M6,CYP76C2,CPS4,CYP71B13,CYP76M13,CYP76L1,CYP71W1,CYP76M1,CYP71Z5,CYP76M2,CYP76M9,CYP76M8,CYP76M5,CYP76M14,CYP71Z6,CYP99A2,CYP71Z2,CYP99A3,CYP76M7,CYP71Z1,CYP71Z8,KSL10,KS1,CPS2,KS7,KSL11,CYP71Z4,D35,KS6,KS5,CYP71Z7	OsKS4, KS4, KSL4, OsKSL4, DTS2, OsDTS2, OsTPS16, TPS16, TPS8, OsTPS8,OsKS8, KS8, KSL8, OsKSL8, DTC2, OsDTC2, OsDTC2/OsKS8, OsTPS32, TPS17, OsTPS17, KSL11, OsKSL11,OsCYP76M10, OsCYP76-10, CYP76-10, OsCYP71T9, CYP71T9,Oscyp71Z3,OsCYP76M6, OsCYP76-5, CYP76-5, OsCYP71T5, CYP71T5,CYP76C2,OsCPS4, CYC1, OsCYC1, OsCyc1, cpsl3, OsCPSL3, OsCPSsyn, OsCyc1/OsCPS4, OsTPS15, Os-CPS4, TPS11, OsTPS11,CYP71B13,CYP76M13,OsCYP76L1, OsCYP76-12, CYP76-12, OsCYP71E4, CYP71E4,OsCYP71W1, OsCYP71W2, CYP71W2,OsCYP76M1, OsCYP76-9, CYP76-9, OsCYP71T8, CYP71T8,Oscyp71Z5, OsCYP71Z4, CYP71Z4,OsCYP76M2, OsCYP76-11, CYP76-11,CYP76M9, OsCYP76-7, CYP76-7, OsCYP71T7, CYP71T7,OsCYP76M8, OsCYP76-3, CYP76-3,OsCYP76M5, OsCYP76-2, CYP76-2, OsCYP71T4, CYP71T4,OsCYP76M14, OsCYP76-1, CYP76-1,Oscyp71Z6, OsCYP71Z5, CYP71Z5,OsCYP99A2,Oscyp71Z2,OsCYP99A3,OsCYP76M7, CYP76M10, OsCYP76M10, OsCYP76-4, CYP76-4,Oscyp71Z1, OsCYP71Z7, CYP71Z7,Oscyp71Z8, OsCYP71Z3, CYP71Z3,OsKSL10, KS10, OsKS10, OsTPS33, TPS33, TPS21, OsTPS21,OsKS1, KS1, KS1A, KSL1, OsKSL1, OsKS1A, OsKS1B, OsKS1C, Ks1, Os KS1, OsTPS26, TPS6, OsTPS6,OsCPS2, cps2, OsCPS2ent, CYC2, OsCyc2, OsCYC2, OsCPSL1, cpsl1, OsCyc2/OsCPS2, OsTPS7, Os-CPS2, TPS13, OsTPS13,OsKS7, KS7, KSL7, OsKSL7, DTC1, OsDTC1, OsKS3, OsDTC1/OsKS7, OsTPS6, TPS6, TPS38, OsTPS38,OsKSL11, KS11, OsKS11,Oscyp71Z4, OsCYP71Z2, CYP71Z2,d35, d35(t), dwf30, OsKOL2, KOL2, KO2, OsKO2, OSKO2, KO, CYP701A, CYP701A6, Os KO2, OsKOL2/CYP701A,OsKS6, KS6, KSL6, OsKSL6, KS5, OsKS5, OsTPS9, TPS9, TPS14, OsTPS14,OsKS5, KS5, KSL5, OsKSL5, KSL5i, OsKSL5i, KSL5j, OsKSL5j, KS6, OsKS6, OsTPS8, TPS45, OsTPS45,Oscyp71Z7, OsCYP71Z6, CYP71Z6
32208	19938377	Cho JI,Ryoo N,Hahn TR,Jeon JS	Evidence for a role of hexokinases as conserved glucose sensors in both monocot and dicot plant species.	Plant Signal Behav	4(9)	908-910	2009		
32209	19826229	Sanz A,Llamas A,Ullrich CI	Distinctive phytotoxic effects of Cd and Ni on membrane functionality.	Plant Signal Behav	4(10)	980-2	2009		
32210	19826775	Zhou Y,Cao Y,Huang Y,Xie W,Xu C,Li X,Wang S	Multiple gene loci affecting genetic background-controlled disease resistance conferred by R gene Xa3/Xa26 in rice.	Theor. Appl. Genet.	120(1)	127-38	2009		
32211	20514239	Kant S,Rothstein S	Auxin-responsive SAUR39 gene modulates auxin level in rice.	Plant Signal Behav	4(12)	1174-1175	2009	SAUR39	OsSAUR39
32212	20514236	Senadheera P,Maathuis FJ	Differentially regulated kinases and phosphatases in roots may contribute to inter-cultivar difference in rice salinity tolerance.	Plant Signal Behav	4(12)	1163-1165	2009		
32213	19830390	Gothandam KM,Nalini E,Karthikeyan S,Shin JS	OsPRP3, a flower specific proline-rich protein of rice, determines extracellular  matrix structure of floral organs and its overexpression confers cold-tolerance.	Plant Mol. Biol.	72(1-2)	125-35	2010	PRP3	OsPRP3
32214	19833360	Violante-Mota F,Tellechea E,Moran JF,Sarath G,Arredondo-Peter R	Analysis of peroxidase activity of rice (Oryza sativa) recombinant hemoglobin 1:  Implications for in vivo function of hexacoordinate non-symbiotic hemoglobins in  plants.	Phytochemistry	71(1)	21-26	2010		
32215	19837870	Kuroha T,Tokunaga H,Kojima M,Ueda N,Ishida T,Nagawa S,Fukuda H,Sugimoto K,Sakakibara H	Functional analyses of LONELY GUY cytokinin-activating enzymes reveal the importance of the direct activation pathway in Arabidopsis.	Plant Cell	21(10)	3152-69	2009	LOGL10,LOG1,LOGL7,LOGL2,LOGL4,LOGL5,LOGL3,LOGL1,LOGL8,LOGL9,LABA1	LOGL10,OsLOG1, LOG, Log, log, OsLOG,LOGL7,LOGL2,LOGL4,OsLOGL5,OsLOGL3,OsLOGL1,LOGL8,LOGL9,LOGL6, OsLOGL6, An-2
32216	19841886	Venuprasad R,Dalid CO,Del Valle M,Zhao D,Espiritu M,Sta Cruz MT,Amante M,Kumar A,Atlin GN	Identification and characterization of large-effect quantitative trait loci for grain yield under lowland drought stress in rice using bulk-segregant analysis.	Theor. Appl. Genet.	120(1)	177-90	2009		
32217	19843335	Fauteux F,Stromvik MV	Seed storage protein gene promoters contain conserved DNA motifs in Brassicaceae, Fabaceae and Poaceae.	BMC Plant Biol	9	126	2009		
32218	19847104	Ghanashyam C,Jain M	Role of auxin-responsive genes in biotic stress responses.	Plant Signal Behav	4(9)	846-8	2009	SAUR39,SAUR21,SAUR30,SAUR53,SAUR58,SAUR28,SAUR33,SAUR25,SAUR10,SAUR38,SAUR5,SAUR19,SAUR22,SAUR20,SAUR12,SAUR57,SAUR2	OsSAUR39,OsSAUR21,OsSAUR30,OsSAUR53,OsSAUR58,OsSAUR28,OsSAUR33,OsSAUR25,OsSAUR10,OsSAUR38, OsSAURq9, SAURq9,OsSAUR5,OsSAUR19,OsSAUR22,OsSAUR20,OsSAUR12,OsSAUR57,OsSAUR2
32219	19847266	Naito K,Zhang F,Tsukiyama T,Saito H,Hancock CN,Richardson AO,Okumoto Y,Tanisaka T,Wessler SR	Unexpected consequences of a sudden and massive transposon amplification on rice  gene expression.	Nature	461	1130-4	2009		
32220	19851874	Fujino K,Matsuda Y	Genome-wide analysis of genes targeted by qLTG3-1 controlling low-temperature germinability in rice.	Plant Mol. Biol.	72(1-2)	137-52	2010		
32221	19853963	Lee K,Bae DW,Kim SH,Han HJ,Liu X,Park HC,Lim CO,Lee SY,Chung WS	Comparative proteomic analysis of the short-term responses of rice roots and leaves to cadmium.	J. Plant Physiol.	167(3)	161-8	2010		
32222	19856189	Petit J,Bourgeois E,Stenger W,Bes M,Droc G,Meynard D,Courtois B,Ghesquiere A,Sabot F,Panaud O,Guiderdoni E	Diversity of the Ty-1 copia retrotransposon Tos17 in rice (Oryza sativa L.) and the AA genome of the Oryza genus.	Mol. Genet. Genomics	282(6)	633-52	2009		
32223	19864426	Oda T,Hashimoto H,Kuwabara N,Akashi S,Hayashi K,Kojima C,Wong HL,Kawasaki T,Shimamoto K,Sato M,Shimizu T	Structure of the N-terminal regulatory domain of a plant NADPH oxidase and its functional implications.	J. Biol. Chem.	285(2)	1435-45	2010		
32224	20514227	Fernandes J,Tavares S,Amancio S	Identification and expression of cytokinin signaling and meristem identity genes  in sulfur deficient grapevine (Vitis vinifera L.).	Plant Signal Behav	4(12)	1128-1135	2009		
32225	19880795	Yamaji N,Huang CF,Nagao S,Yano M,Sato Y,Nagamura Y,Ma JF	A zinc finger transcription factor ART1 regulates multiple genes implicated in aluminum tolerance in rice.	Plant Cell	21(10)	3339-49	2009	STAR1,ZOS12-02,STAR2,CDT3,EXPA10	OsENA2, OsABCI12, ENA2, ABCI12, OsSTAR1, OsSATR1,OsART1, STAR3, OsZOS12-02, ART1,OsSTAR2, OsSATR2,OsCDT3,OsEXPA10, OsEXP10, osaEXPa1.28
32226	19885651	Fu Z,Yan J,Zheng Y,Warburton ML,Crouch JH,Li JS	Nucleotide diversity and molecular evolution of the PSY1 gene in Zea mays compared to some other grass species.	Theor. Appl. Genet.	120(4)	709-20	2010	PSY1	OsPSY1 
32227	19888555	Li T,Gong C,Wang T	RA68 is required for postmeiotic pollen development in Oryza sativa.	Plant Mol. Biol.	72(3)	265-77	2010	RA68	OsRA68
32228	19889878	Yao X,Horie T,Xue S,Leung HY,Katsuhara M,Brodsky DE,Wu Y,Schroeder JI	Differential sodium and potassium transport selectivities of the rice OsHKT2;1 and OsHKT2;2 transporters in plant cells.	Plant Physiol.	152(1)	341-55	2010		
32229	19890663	Chaudhary N,Nijhawan A,Khurana JP,Khurana P	Carotenoid biosynthesis genes in rice: structural analysis, genome-wide expression profiling and phylogenetic analysis.	Mol. Genet. Genomics	283(1)	13-33	2010		
32230	19891703	Lacombe S,Bangratz M,Vignols F,Brugidou C	The rice yellow mottle virus P1 protein exhibits dual functions to suppress and activate gene silencing.	Plant J.	61(3)	371-82	2010		
32231	19891707	Gomi K,Satoh M,Ozawa R,Shinonaga Y,Sanada S,Sasaki K,Matsumura M,Ohashi Y,Kanno H,Akimitsu K,Takabayashi J	Role of hydroperoxide lyase in white-backed planthopper (Sogatella furcifera Horvath)-induced resistance to bacterial blight in rice, Oryza sativa L.	Plant J.	61(1)	46-57	2010		
32232	19892983	Lee SW,Han SW,Sririyanum M,Park CJ,Seo YS,Ronald PC	A type I-secreted, sulfated peptide triggers XA21-mediated innate immunity.	Science	326	850-3	2009		
32233	19898814	Chi XF,Lou XY,Shu QY	Combining DNA pooling with selective recombinant genotyping for increased efficiency in fine mapping.	Theor. Appl. Genet.	120(4)	775-83	2010		
32234	19898828	Li Q,Yang X,Bai G,Warburton ML,Mahuku G,Gore M,Dai J,Li J,Yan J	Cloning and characterization of a putative GS3 ortholog involved in maize kernel  development.	Theor. Appl. Genet.	120(4)	753-63	2010	LK3	lk3(t), lk3(t)*, SG3, GS3, SG3-GS3, OsGW3, OsGS3, RGG3/GS3/Mi/OsGGC1, RGG3, Mi, OsGGC1, GGC1, OsSYL3, SYL3, TT2, OsTT2
32235	19901325	Yoshida A,Suzaki T,Tanaka W,Hirano HY	The homeotic gene long sterile lemma (G1) specifies sterile lemma identity in the rice spikelet.	Proc. Natl. Acad. Sci. U.S.A.	106(47)	20103-8	2009	G1L3,G1L7,G1L2,G1L4,G1L8,G1L9,BLS1,G1,G1L1,G1L5	OsG1L3,OsG1L7,OsG1L2,OsG1L4,OsG1L8,OsG1L9,OsBLS1, OsG1L6, G1L6, TH1, OsTH1, TH1/BSG1/BLS1/AFD1, BSG1, OsBSG1, AFD1, OsAFD1, BH1, OsBH1,g1 (lng), lng, g1, ELE, Os ELE, OsG1, G1/ELE, LSL2, OsLSL2,OsG1L1,OsG1L5, TAW1, OsTAW1
32236	19903225	Zhu SQ,Zhao H,Zhou R,Ji BH,Dan XY	Substrate selectivity of glycerol-3-phosphate acyl transferase in rice.	J. Integr. Plant Biol.	51(11)	1040-9	2009		
32237	19903869	Wu L,Zhang Q,Zhou H,Ni F,Wu X,Qi Y	Rice MicroRNA effector complexes and targets.	Plant Cell	21(11)	3421-35	2009	AGO1D,MIR2863A,AGO1B,MIR2865,MIR2866,MIR2867,MIR2868,MIR2869,MIR2870,MIR2863B,MIR2905,MIR2872,MIR2873,MIR2874,MIR2875,MIR2876,MIR2877,MIR2879,MIR2880,MIR2871A,MIR2878,MIR1863B,MIR2864,MIR396G,MIR396H,AGO1A,AGO1C	OsAGO1d, AGO1d,miR2863a, osa-miR2863a, osa-MIR2863a,OsAGO1b, AGO1b, AGO1-2 ,miR2865, osa-miR2865, osa-MIR2865,miR2866, osa-miR2866, osa-MIR2866,miR2867, osa-miR2867, osa-MIR2867osa-miR2867-3p osa-miR2867-5p,miR2868, osa-miR2868, osa-MIR2868,miR2869, osa-miR2869, osa-MIR2869,miR2870, osa-miR2870, osa-MIR2870,miR2863b, osa-miR2863b, osa-MIR2863b,miR2905, osa-miR2905, osa-MIR2905,miR2872, osa-miR2872, osa-MIR2872,miR2873, osa-miR2873, osa-MIR2873, osa-MIR2873a,miR2874, osa-miR2874, osa-MIR2874,miR2875, osa-miR2875, osa-MIR2875,miR2876, osa-miR2876, osa-MIR2876, osa-miR2876.1, osa-miR2876.2,miR2877, osa-miR2877, osa-MIR2877,miR2879, osa-miR2879, osa-MIR2879,miR2880, osa-miR2880, osa-MIR2880,miR2871a, osa-miR2871a, osa-MIR2871a, MIR2871a-5posa-miR2871a-3p osa-miR2871a-5p,miR2878, osa-miR2878, osa-MIR2878, osa-miR2878-5p, osa-miR2878-3posa-miR2878-3p osa-miR2878-5p,miR1863b, osa-miR1863b, osa-MIR1863b, osa-miR1863b.2, MIR1863b.2-3p,miR2864, osa-miR2864, osa-MIR2864, osa-miR2864.1, osa-miR2864.2,miR396g, osa-miR396g, osa-MIR396g,miR396h, osa-miR396h, osa-MIR396h,OsAGO1a, AGO1a, AGO10, AGO1-1 ,OsAGO1c, OsAGO1, AGO1, AGO1c
32238	19903871	Strader LC,Beisner ER,Bartel B	Silver ions increase auxin efflux independently of effects on ethylene response.	Plant Cell	21(11)	3585-90	2009		
32239	19910532	Romer P,Recht S,Lahaye T	A single plant resistance gene promoter engineered to recognize multiple TAL effectors from disparate pathogens.	Proc. Natl. Acad. Sci. U.S.A.	106(48)	20526-31	2009		
32240	19923234	Hong JP,Byun MY,An K,Yang SJ,An G,Kim WT	OsKu70 is associated with developmental growth and genome stability in rice.	Plant Physiol.	152(1)	374-87	2010	KU70,KU80	OsKu70, Ku70,OsKu80, Ku80
32241	19924544	Huang S,Taylor NL,Narsai R,Eubel H,Whelan J,Millar AH	Functional and composition differences between mitochondrial complex II in Arabidopsis and rice are correlated with the complex genetic history of the enzyme.	Plant Mol. Biol.	72(3)	331-42	2010	_,SDH3,SDH1,SDH4,SDH5,SDH6,SDH7,SDH2-2,LPS1	sdh3, SDH3,,sdh1, FP, sdh1-1,,,,,sdh2-2, OsSDH2-2 ,SDH2, SDHB, sdhB, RPS14, rps14, sdh2-1, SDH2-RPS14, OsLPS1, OsSDH2-1 
32242	19926801	Zimmermann R,Sakai H,Hochholdinger F	The Gibberellic Acid Stimulated-Like gene family in maize and its role in lateral root development.	Plant Physiol.	152(1)	356-65	2010		
32243	19930558	Gupta AB,Sankararamakrishnan R	Genome-wide analysis of major intrinsic proteins in the tree plant Populus trichocarpa: characterization of XIP subfamily of aquaporins from evolutionary perspective.	BMC Plant Biol	9	134	2009		
32244	19933265	Kumamaru T,Uemura Y,Inoue Y,Takemoto Y,Uddin Siddiqui S,Ogawa M,Hara-Nishimura I,Satoh H	Vacuolar Processing Enzyme plays an Essential Role in the Crystalline Structure of Glutelin in Rice Seed.	Plant Cell Physiol.	51(1)	38-46	2010		
32245	19933266	Urayama S,Moriyama H,Aoki N,Nakazawa Y,Okada R,Kiyota E,Miki D,Shimamoto K,Fukuhara T	Knock-down of OsDCL2 in Rice Negatively Affects Maintenance of the Endogenous dsRNA Virus, Oryza sativa Endornavirus.	Plant Cell Physiol.	51(1)	58-67	2010	RDR1,RDR5,RDR4,RDR3,RDR2,DCL3A,DCL2A	OsRDR1,OsRDR5,OsRDR4, OsRDR3b,OsRDR3, OsRDR3a,OsRDR2,OsDCL3a,OsDCL2a, OsDCL2, DCL2
32246	19933267	Kobayashi K,Maekawa M,Miyao A,Hirochika H,Kyozuka J	PANICLE PHYTOMER2 (PAP2), encoding a SEPALLATA subfamily MADS-box protein, positively controls spikelet meristem identity in rice.	Plant Cell Physiol.	51(1)	47-57	2010	PAP2	MADS34, OsMADS34, RMADS212/RMADS217/RMADS221, OsPAP2/MADS34, MADS34/PAP2, PAP2/OsMADS34, OsMADS34/PAP2, OsMADS19
32247	19933874	Zhu K,Tang D,Yan C,Chi Z,Yu H,Chen J,Liang J,Gu M,Cheng Z	ERECT PANICAL2 Encodes a Novel Protein That Regulates Panicle Erectness in Indica Rice.	Genetics	184(2)	343-50.	2010	DEP2,EP2	,ep2, EP2/DEP2/SRS1, SRS1/DEP2, DEP2, SRS1, OsSRS1, CL7(t), OsRELA, RELA
32248	19938377	Cho JI,Ryoo N,Hahn TR,Jeon JS	Evidence for a role of hexokinases as conserved glucose sensors in both monocot and dicot plant species.	Plant Signal Behav	4(9)	908-10	2009		
32249	19949766	Liu T,Shao D,Kovi MR,Xing Y	Mapping and validation of quantitative trait loci for spikelets per panicle and 1,000-grain weight in rice (Oryza sativa L.).	Theor. Appl. Genet.	120(5)	933-42	2010		
32250	19949767	Maas LF,McClung A,McCouch S	Dissection of a QTL reveals an adaptive, interacting gene complex associated with transgressive variation for flowering time in rice.	Theor. Appl. Genet.	120(5)	895-908	2010	SE1,HD3A,MADS50,YL1,EMF1	Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, OsHd1,  Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,OsMADS50, AGL20, SOC1, OsSOC1, RMADS208, OsSOC1/ OsMADS50/DTH3, DTH3, OsDTH3,MTC, OsMTC, YGL8, OsYGL8, OsCRD1, CRD1, OsCRD, CRD, YL-1, PNZIP, OsPNZIP,OsEMF1
32251	19953291	Kusumi K,Hirotsuka S,Shimada H,Chono Y,Matsuda O,Iba K	Contribution of chloroplast biogenesis to carbon-nitrogen balance during early leaf development in rice.	J. Plant Res.	short communication		2009		
32252	19957018	Lim SD,Yim WC,Moon JC,Kim DS,Lee BM,Jang CS	A gene family encoding RING finger proteins in rice: their expansion, expression  diversity, and co-expressed genes.	Plant Mol. Biol.	72(4-5)	369-80	2010		
32253	19965875	Sun Y,Reinders A,Lafleur KR,Mori T,Ward JM	Transport Activity of Rice Sucrose Transporters OsSUT1 and OsSUT5.	Plant Cell Physiol.	51(1)	114-122	2010	SUT1,SUT4,SUT3,SUT2,SUT5	OsSUT1, OsSUT2,OsSUT4(t), OsSUT4,OsSUT3(t), OsSUT3, SUC3, OsSUT2,OsSUT2(t), SUT2M, OsSUT2, OsSUT2M, OsSUT5,OsSUT5(t), OsSUT5Z, OsSUT5
32254	19965963	Liu X,Williams CE,Nemacheck JA,Wang H,Subramanyam S,Zheng C,Chen MS	Reactive Oxygen Species Are Involved in Plant Defense against a Gall Midge.	Plant Physiol.	152(2)	985-9	2010		
32255	19969519	Cohu CM,Abdel-Ghany SE,Gogolin Reynolds KA,Onofrio AM,Bodecker JR,Kimbrel JA,Niyogi KK,Pilon M	Copper delivery by the copper chaperone for chloroplast and cytosolic copper/zinc-superoxide dismutases: regulation and unexpected phenotypes in an Arabidopsis mutant.	Mol Plant	2(6)	1336-50	2009		
32256	20003164	Cui R,Han J,Zhao S,Su K,Wu F,Du X,Xu Q,Chong K,Theissen G,Meng Z	Functional conservation and diversification of class E floral homeotic genes in rice (Oryza sativa).	Plant J.	61(5)	767-81	2010	LHS1,MADS24,MADS7,MADS5	OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO, OsLHS1, OsLG3b, LG3b, qLGY3, LGY3, DLN80, OsDLN80, OLR, OsOLR, GW3p6, OsGW3p6, OsMADS1GW3p6, MADS1GW3p6, qLGY3/OsLG3b/GW3p6,OsMADS24, MADS8, OsMADS8, OsMADS8/24 ,OsMADS7, OsMADS45, FDRMADS1, RMADS216, AGL6, M79, MADS45, Os MADS7, Os MADS45, OsMADS7/45,OsMADS5, FDRMADS2
32257	20007444	Ning J,Li X,Hicks LM,Xiong L	A Raf-like MAPKKK gene DSM1 mediates drought resistance through ROS scavenging in rice.	Plant Physiol.	152(2)	876-90	2010	POX8.1,POX22.3,DRP5A,_,DSM1	POX8.1, prx110, POX8,POX22.3, OSPER, OsPOX, POX, Pir3, prx111, POX22, OsPOX1, POX1, OsPOX22.3, OsPR9, PR9,OsDRP5A,,OsDSM1, OsMAPKKK6, MAPKKK6
32258	20007447	Ogiso E,Takahashi Y,Sasaki T,Yano M,Izawa T	The role of casein kinase II in flowering time regulation has diversified during evolution.	Plant Physiol.	152(2)	808-20	2010	TOC1,SE1,CCA1, CK2ALPHA3,HD6,_,_	OsTOC1, OsPRR1, Os-PRR1, PRR1, OsRRA21, OsCCT07,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, OsHd1,  Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,OsCCA1, OsLHY, LHY, LHY-like_chr.8, COC1, DLN203, OsDLN203, LEM1, OsLEM1, Nhd1, OsNhd1,OsCK2alpha3, CK2alpha3, OsCKA2-3, CKA2-3,Hd6(t)*, OSCKA2, OsCKA2, CKA2, OsCKA2-1, CKA2-1, Hd6/CK2alpha, CK2alpha,OsCKA2-2, CKA2-2,OsCKA2-4, CKA2-4
32259	20008096	Charron JB,He H,Elling AA,Deng XW	Dynamic Landscapes of Four Histone Modifications during Deetiolation in Arabidopsis.	Plant Cell	21(12)	3732-48	2009		
32260	20009022	Zhang LY,Bai MY,Wu J,Zhu JY,Wang H,Zhang Z,Wang W,Sun Y,Zhao J,Sun X,Yang H,Xu Y,Kim SH,Fujioka S,Lin WH,Chong K,Lu T,Wang ZY	Antagonistic HLH/bHLH Transcription Factors Mediate Brassinosteroid Regulation of Cell Elongation and Plant Development in Rice and Arabidopsis.	Plant Cell	21(12)	3767-80	2009	IBH1,ILI5,ILI6,ILI3,BU1,ILI1,ILI7,ILI2	Os IBH1, OsIBH1, OsbHLH175, bHLH175,ILI5, OsILI5, PGL2, OsPGL2, Os170, OsBUL1, BUL1, ILI5/PGL2, OsbHLH170, bHLH170,ILI6, OsILI6, PGL1, OsPGL1,OsILI3, OsbHLH153, bHLH153, OsBUL2, BUL2,ILI4, OsILI4 , OsBU1, BU1/ILI4, OsbHLH172, bHLH172,OsbHLH154, bHLH154, OsILI1,OsILI7, OsbHLH173, bHLH173,OsILI2, OsbHLH186, bHLH186, ATAC2/ILI2, ATAC2, OsATAC2
32261	20009505	Shimizu H,Shinomura T,Yamamoto KT	Similarities and differences between phytochrome-mediated growth inhibition of coleoptiles and seminal roots in rice seedlings.	Plant Signal Behav	5(2)	134-5	2010		
32262	20012261	Peng HF,Chen XH,Lu YP,Peng YF,Wan BH,Chen ND,Wu B,Xin SP,Zhang GQ	Fine mapping of a gene for non-pollen type thermosensitive genic male sterility in rice (Oryza sativa L.).	Theor. Appl. Genet.	120(5)	1013-20	2010		
32263	20012263	Suh JP,Jeung JU,Lee JI,Choi YH,Yea JD,Virk PS,Mackill DJ,Jena KK	Identification and analysis of QTLs controlling cold tolerance at the reproductive stage and validation of effective QTLs in cold-tolerant genotypes of rice (Oryza sativa L.).	Theor. Appl. Genet.	120(5)	985-95	2010		
32264	20015061	Yoshii M,Yamazaki M,Rakwal R,Kishi-Kaboshi M,Miyao A,Hirochika H	The NAC transcription factor RIM1 of rice is a new regulator of jasmonate signaling.	Plant J.	61(5)	804-15	2010	AOS2,OG1,RIM1	OsAOS2, CYP74A2, OsAOS, OsAOS1,OsOPR7, OPR7, OsOPR13, OsOPR3, OsOPR5, OsOPR9, OsOPR08-1,  OPR13, OPR3, OPR5, OPR9, OPR08-1, OsOPR8, OPR8,ONAC054, ONAC54, NAC54, ONAC054alpha, ONAC054beta
32265	20017947	Zhu QH,Upadhyaya NM,Gubler F,Helliwell CA	Over-expression of miR172 causes loss of spikelet determinacy and floral organ abnormalities in rice (Oryza sativa).	BMC Plant Biol	9	149	2009	MIR172C,MIR172D,SNB,MIR172B,MIR172A	OsmiR172c, miR172c, osa-MIR172c, Osa-miR172c ,OsmiR172d, miR172d, osa-MIR172d osa-miR172d osa-miR172d-3p osa-miR172d-5p, Osa-miR172d,AP2/EREBP#073, AP2/EREBP73, AP2-3, OsAP2-3, SSH1, OsSSH1, OsSNB, DLN181, DLN181a, DLN181b, OsDLN181, OsDLN181a, OsDLN181b, SUI4, OsSUI4, SUI4/SNB,OsmiR172b, miR172b, osa-MIR172b, Osa-miR172b ,OsmiR172a, miR172a, osa-MIR172a, Osa-miR172a 
32266	20018598	Takenaka M	MEF9, an E subclass PPR protein, is required for an RNA editing event in the nad7 transcript in mitochondria of Arabidopsis thaliana.	Plant Physiol.	152(2)	939-47	2010	MEF9	
32267	20018603	You MK,Shin HY,Kim YJ,Ok SH,Cho SK,Jeung JU,Yoo SD,Kim JK,Shin JS	Novel bifunctional nucleases, OmBBD and AtBBD1, are involved in ABA-mediated callose deposition in Arabidopsis.	Plant Physiol.	152(2)	1015-29	2010	_,_	OmBBD,OsBBD1
32268	20018701	Du B,Zhang W,Liu B,Hu J,Wei Z,Shi Z,He R,Zhu L,Chen R,Han B,He G	Identification and characterization of Bph14, a gene conferring resistance to brown planthopper in rice.	Proc. Natl. Acad. Sci. U.S.A.	106(52)	22163-22168	2009	BPH14	Bph14 (Qbp1), Bph14, Qbp1, qBPH-3
32269	20021558	Duan ZQ,Bai L,Zhao ZG,Zhang GP,Cheng FM,Jiang LX,Chen KM	Drought-stimulated activity of plasma membrane nicotinamide adenine dinucleotide  phosphate oxidase and its catalytic properties in rice.	J. Integr. Plant Biol.	51(12)	1104-15	2009		
32270	20023399	Kobayashi T,Nakanishi H,Nishizawa NK	Dual regulation of iron deficiency response mediated by the transcription factor  IDEF1.	Plant Signal Behav	5(2)	157-9	2010		
32271	20023405	Meng Y,Chen D,Ma X,Mao C,Cao J,Wu P,Chen M	Mechanisms of microRNA-mediated auxin signaling inferred from the rice mutant osaxr.	Plant Signal Behav	5(3)	252-4	2010		
32272	20028842	Shim D,Hwang JU,Lee J,Lee S,Choi Y,An G,Martinoia E,Lee Y	Orthologs of the Class A4 Heat Shock Transcription Factor HsfA4a Confer Cadmium Tolerance in Wheat and Rice.	Plant Cell	21(12)	4031-43	2009		
32273	20032208	Shinya T,Osada T,Desaki Y,Hatamoto M,Yamanaka Y,Hirano H,Takai R,Che FS,Kaku H,Shibuya N	Characterization of receptor proteins using affinity cross-linking with biotinylated ligands.	Plant Cell Physiol.	51(2)	262-70	2010		
32274	20035315	Chin JH,Lu X,Haefele SM,Gamuyao R,Ismail A,Wissuwa M,Heuer S	Development and application of gene-based markers for the major rice QTL Phosphorus uptake 1.	Theor. Appl. Genet.	120(6)	1073-86	2010		
32275	20037474	Xu Y,Cao H,Chong K	APC-targeted RAA1 degradation mediates the cell cycle and root development in plants.	Plant Signal Behav	5(3).	218-23	2010		
32276	20039013	Tezuka K,Miyadate H,Katou K,Kodama I,Matsumoto S,Kawamoto T,Masaki S,Satoh H,Yamaguchi M,Sakurai K,Takahashi H,Satoh-Nagasawa N,Watanabe A,Fujimura T,Akagi H	A single recessive gene controls cadmium translocation in the cadmium hyperaccumulating rice cultivar Cho-Ko-Koku.	Theor. Appl. Genet.	120(6)	1175-82	2010		
32277	20039179	Fang Y,Xie K,Hou X,Hu H,Xiong L	Systematic analysis of GT factor family of rice reveals a novel subfamily involved in stress responses.	Mol. Genet. Genomics	283(2)	157-69	2010	MSL40,MSL37,MSL13	OsMSL40, DLN253, OsDLN253, OsGTgamma-3, GTgamma-3,OsMSL37, DLN247, OsDLN247, OsGTgamma-2, GTgamma-2,OsMSL13, DLN59, OsDLN59, OsGTgamma-1, GTgamma-1
32278	20039193	Amir Hossain M,Lee Y,Cho JI,Ahn CH,Lee SK,Jeon JS,Kang H,Lee CH,An G,Park PB	The bZIP transcription factor OsABF1 is an ABA responsive element binding factor  that enhances abiotic stress signaling in rice.	Plant Mol. Biol.	72(4-5)	557-66	2010	_,BZIP12,NAC6,LEA3-1	OsABA45, ABA45, OsGDP, GDP, OsASR, ASR,OsbZIP12, OsABF1, ABF1, OsOSE2, OSE2, OsbZIP12/OsABF1,OsNAC6, ONAC048, NAC48, SNAC2, SNAC2/OsNAC6, OsNAC6/ONAC048, OsSNAC2, SNAC-2, OsSNAC-2, OsNAC2,OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3, OsLEA3A, LEA3A
32279	20040584	Izawa Y,Takayanagi Y,Inaba N,Abe Y,Minami M,Fujisawa Y,Kato H,Ohki S,Kitano H,Iwasaki Y	Function and Expression Pattern of the {alpha} Subunit of the Heterotrimeric G Protein in Rice.	Plant Cell Physiol.	51(2)	271-81	2010		
32280	20049613	Matsukura S,Mizoi J,Yoshida T,Todaka D,Ito Y,Maruyama K,Shinozaki K,Yamaguchi-Shinozaki K	Comprehensive analysis of rice DREB2-type genes that encode transcription factors involved in the expression of abiotic stress-responsive genes.	Mol. Genet. Genomics	283(2)	185-96	2010	ERF117,ERF44,ERF41,ERF42,DREB2A	OsERF#117, OsERF117, AP2/EREBP#150, AP2/EREBP150, OsABI4, ABI4,OsERF#044, OsERF044, OsERF44, AP2/EREBP#112, AP2/EREBP112, OsDREB2C, DREB2C, OsEnS-124,OsERF#041, OsERF041, OsERF41, AP2/EREBP#025, AP2/EREBP25, OsDREB2E,OsERF#042, OsERF042, OsERF42, AP2/EREBP#048, AP2/EREBP48, OsDREB2B, DREB2B, OsDREB2B2, OsDREB2A, DREB2A,OsDREB2A, OsDREB2a, ERF40, OsERF#040, OsERF040, OsERF40, AP2/EREBP#167, AP2/EREBP167
32281	20062964	Fujita D,Ebron LA,Araki E,Kato H,Khush GS,Sheehy JE,Lafarge T,Fukuta Y,Kobayashi N	Fine mapping of a gene for low-tiller number, Ltn, in japonica rice (Oryza sativa L.) variety Aikawa 1.	Theor. Appl. Genet.	120(6)	1233-40	2010		
32282	20064202	Gutierrez AG,Carabali JS,Giraldo OX,Martinez CP,Correa F,Prado G,Tohme J,Lorieux M	Identification of a Rice Stripe Necrosis Virus resistance locus and yield component QTLs using Oryza sativa x O. glaberrima introgression lines.	BMC Plant Biol	10	6	2010		
32283	20072620	Liu F,Xu W,Wei Q,Zhang Z,Xing Z,Tan L,Di C,Yao D,Wang C,Tan Y,Yan H,Ling Y,Sun C,Xue Y,Su Z	Gene expression profiles deciphering rice phenotypic variation between Nipponbare (Japonica) and 93-11 (Indica) during oxidative stress.	PLoS One	5(1)	e8632	2010		
32284	11448732	Takai R, Hasegawa K, Kaku H, Shibuya N, Minami E.	Isolation and analysis of expression mechanisms of a rice gene, EL5, which shows structural similarity to ATL family from Arabidopsis, in response to N-acetylchitooligosaccharide elicitor.	Plant Sci.	160(4)	577-583	2001	RRF1,EL5	,EL5.1, EL5.2, EL5.3, EL5.4, EL5.5, EL5.6,  OsRING64, RING64
32285		Liu H., Chen Y., Li G., Lin X.-Q., Qin R.	Analyses of karyotypes and comparative physical locations of the resistance gene, Xa-5, between Oryza sativa and Oryza officinalis	African Journal of Biotechnology	8(21)	5673-5678	2009		
32286		Hao Z.N., Wang J., Wang L.P., Tao R.X.	Influences of the disease resistance conferred by the individual transgenes, Pi-d2, Pi-d3 and Xa21, on the transgenic rice plants in yield and grain quality	African Journal of Biotechnology	8(19)	4845-4848	2009	PID2,PID3	Pi-d2, Pi-d(t)2, PiD2(t), Pid2, PI-D2, Pi-d2(t), SDRLK-PID2, OsSDRLK-PID2,Pi-d3, Pid3, Pi25, Pid3-I1, qBRM6.2
32287		Kuriakose B., Ganesan V., Thomas G., Viswanathan A., Anand N.	Random amplification of genomic ends (RAGE) as an efficient method for isolation and cloning of promoters and uncloned genomic regions	African Journal of Biotechnology	8(19)	4765-4773	2009		
32288		Naqvi S.M.S., Raza S.Q., Hyder M.Z., Ozalp C.V., Oktem H.A., Yucel M.	Sub-cellular distribution of two salt-induced peptides in roots of Oryza sativa L. var Nonabokra	African Journal of Biotechnology	8(18)	4613-4617	2009		
32289		Niranjan Reddy B.P., Bhavna R., Kotasthane A.S.	Saturation mapping of QTL region determining resistance specificity to bacterial leaf blight pathogen in rice with molecular markers, ESTs and genes on sequences in silico	African Journal of Biotechnology	8(17)	4058-4065	2009		
32290		Chen G., Pourkheirandish M., Sameri M., Wang N., Nair S., Shi Y., Li C., Nevo E., Komatsuda T.	Genetic targeting of candidate genes for drought sensitive gene eibi1 of wild barley (Hordeum spontaneum)	Breeding Science	59(5)	637-644	2009		
32291		Win K.T., Kubo T., Miyazaki Y., Doi K., Yamagata Y., Yoshimura A.	Identification of two loci causing F<sub>1</sub> pollen sterility in inter- and intraspecific crosses of rice	Breeding Science	59(4)	411-418	2009	S36,S25	,S25(t), S25(t)*
32292		Karki S., Tsukiyama T., Okumoto Y., Rizal G., Naito K., Teraishi M., Nakazaki T., Tanisaka T.	Analysis of distribution and proliferation of mPing family transposons in a wild rice (Oryza rufipogon Griff.)	Breeding Science	59(3)	297-307	2009		
32293		Takehisa H., Yasuda M., Fukuta Y., Kobayashi N., Hayashi N., Nakashita H., Abe T., Sato T.	Genetic analysis of resistance genes in an Indica-type rice (Oryza sativa L.), Kasalath, using DNA markers	Breeding Science	59(3)	253-260	2009		
32294		Kawasaki A., Imai K., Ushiki J., Ishii T., Ishikawa R.	Molecular constitution of weedy rice (Oryza sativa L.) found in Okayama prefecture, Japan	Breeding Science	59(3)	229-236	2009		
32295		Katayama H., Mori M., Kawamura Y., Tanaka T., Mori M., Hasegawa H.	Production and characterization of transgenic rice plants carrying a high-affinity nitrate transporter gene (OsNRT2.1)	Breeding Science	59(3)	237-243	2009	NRT2.1	OsNRT2.1, OsNRT2.2
32296		Hori K., Yamamoto T., Ebana K., Takeuchi Y., Yano M.	A novel quantitative trait locus, qCL1, involved in semi-dwarfism derived from Japanese rice cultivar Nipponbare	Breeding Science	59(3)	285-295	2009		
32297		Yuo T., Toyota M., Ichii M., Taketa S.	Molecular cloning of a root hairless gene rth1 in rice	Breeding Science	59(1)	13-20	2009	_,RTH1	OsAPYL,OsAPY, RTH1, OsAPY3, APY3
32298		Dufey I., Hakizimana P., Draye X., Lutts S., Bertin P.	QTL mapping for biomass and physiological parameters linked to resistance mechanisms to ferrous iron toxicity in rice	Euphytica	167(3)	143-160	2009		
32299		Yan C.-J., Yan S., Yang Y.-C., Zeng X.-H., Fang Y.-W., Zeng S.-Y., Tian C.-Y., Sun Y.-W., Tang S.-Z., Gu M.-H.	Development of gene-tagged markers for quantitative trait loci underlying rice yield components	Euphytica	169(2)	215-226	2009		
32300		Liu W., Zeng J., Jiang G., He Y.	QTLs identification of crude fat content in brown rice and its genetic basis analysis using DH and two backcross populations	Euphytica	169(2)	197-205	2009		
32301		Bernier J., Kumar A., Venuprasad R., Spaner D., Verulkar S., Mandal N.P., Sinha P.K., Peeraju P., Dongre P.R., Mahto R.N., Atlin G.	Characterization of the effect of a QTL for drought resistance in rice, qtl12.1, over a range of environments in the Philippines and eastern India	Euphytica	166(2)	207-217	2009		
32302		Subashri M., Robin S., Vinod K.K., Rajeswari S., Mohanasundaram K., Raveendran T.S.	Trait identification and QTL validation for reproductive stage drought resistance in rice using selective genotyping of near flowering RILs	Euphytica	166(2)	291-305	2009		
32303		Norton G.J., Price A.H.	Mapping of quantitative trait loci for seminal root morphology and gravitropic response in rice	Euphytica	166(2)	229-237	2009		
32304		Xue D., Chen M., Zhang G.	Mapping of QTLs associated with cadmium tolerance and accumulation during seedling stage in rice (Oryza sativa L.)	Euphytica	165(3)	587-596	2009		
32305		Baruah A.R., Ishigo-Oka N., Adachi M., Oguma Y., Tokizono Y., Onishi K., Sano Y.	Cold tolerance at the early growth stage in wild and cultivated rice	Euphytica	165(3)	459-470	2009		
32306		Wu S.-J., Zhong H., Zhou Y., Zuo H., Zhou L.-H., Zhu J.-Y., Ji C.-Q., Gu S.-L., Gu M.-H., Liang G.-H.	Identification of QTLs for the resistance to rice stripe virus in the indica rice variety Dular	Euphytica	165(3)	557-565	2009		
32307		Kashiwagi T., Hirotsu N., Ujiie K., Ishimaru K.	Lodging resistance locus prl5 improves physical strength of the lower plant part under different conditions of fertilization in rice (Oryza sativa L.)	Field Crops Research	115(1)	107-115	2010		
32308		Tomita M.	Introgression of Green Revolution sd1 gene into isogenic genome of rice super cultivar Koshihikari to create novel semidwarf cultivar 'Hikarishinseiki' (Koshihikari-sd1)	Field Crops Research	114(2)	173-181	2009		
32309		Kato Y., Nemoto K., Yamagishi J.	QTL analysis of panicle morphology response to irrigation regime in aerobic rice culture	Field Crops Research	114(2)	295-303	2009		
32310		Cairns J.E., Audebert A., Mullins C.E., Price A.H.	Mapping quantitative trait loci associated with root growth in upland rice (Oryza sativa L.) exposed to soil water-deficit in fields with contrasting soil properties	Field Crops Research	114(1)	108-118	2009		
32311		Cairns J.E., Namuco O.S., R.Torres, Simborio F.A., Courtois B., Aquino G.A., Johnson D.E.	Investigating early vigour in upland rice (Oryza sativa L.): Part II. Identification of QTLs controlling early vigour under greenhouse and field conditions	Field Crops Research	113(3)	207-217	2009		
32312		Yi M., Nwe K.T., Vanavichit A., Chai-arree W., Toojinda T.	Marker assisted backcross breeding to improve cooking quality traits in Myanmar rice cultivar Manawthukha	Field Crops Research	113(2)	178-186	2009		
32313		Singh S., Mackill D.J., Ismail A.M.	Responses of SUB1 rice introgression lines to submergence in the field: Yield and grain quality	Field Crops Research	113(1)	12-23	2009		
32314		Jairin J., Teangdeerith S., Leelagud P., Kothcharerk J., Sansen K., Yi M., Vanavichit A., Toojinda T.	Development of rice introgression lines with brown planthopper resistance and KDML105 grain quality characteristics through marker-assisted selection	Field Crops Research	110(3)	263-271	2009		
32315		Bernier J., Serraj R., Kumar A., Venuprasad R., Impa S., R.P. V.G., Oane R., Spaner D., Atlin G.	The large-effect drought-resistance QTL qtl12.1 increases water uptake in upland rice	Field Crops Research	110(2)	139-146	2009		
32316		Hwang S.-G., Chen H.-C., Huang W.-Y., Chu Y.-C., Shii C.-T., Cheng W.-H.	Ectopic expression of rice OsNCED3 in Arabidopsis increases ABA level and alters leaf morphology	Plant Sci.	178(1)	12-22	2010		
32317		Stein R.J., Ricachenevsky F.K., Fett J.P.	Differential regulation of the two rice ferritin genes (OsFER1 and OsFER2)	Plant Sci.	177(6)	563-569	2009		
32318		Yoon S., Park J., Ryu M., Yoon I.S., Kim K.-N.	Calcineurin B-like proteins in rice can bind with calcium ion and associate with the Arabidopsis CIPK family members	Plant Sci.	177(6)	577-583	2009	CBL5,CBL3,CBL1	OsCBL5,OsCBL3,OsCBL1, Os-CBL1
32319		Costanzo S., Jia Y.	Alternatively spliced transcripts of Pi-ta blast resistance gene in Oryza sativa	Plant Sci.	177(5)	468-478	2009	PITA	Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30, Trx30
32320		Chaudhary N., Khurana P.	Vitamin E biosynthesis genes in rice: Molecular characterization, expression profiling and comparative phylogenetic analysis	Plant Sci.	177(5)	479-491	2009		
32321		Kuriakose B., Arun V., Gnanamanickam S.S., Thomas G.	Tissue-specific expression in transgenic rice and Arabidopsis thaliana plants of GUS gene driven by the 50 regulatory sequences of an anther specific rice gene YY2	Plant Sci.	177(5)	390-397	2009	LAP6	OsPKS1, PKS1, YY2, OsPKS21, PKS21, OsLAP6/OsPKS1, OsLAP6, OsCHS22, CHS22
32322		Fukayama H., Fukuda T., Masumoto C., Taniguchi Y., Sakai H., Cheng W., Hasegawa T., Miyao M.	Rice plant response to long term CO<sub>2</sub> enrichment: Gene expression profiling	Plant Sci.	177(3)	203-210	2009		
32323		Ariyaratne M., Takamure I., Kato K.	Shoot branching control by reduced culm number 4 in rice (Oryza sativa L.)	Plant Sci.	176(6)	744-748	2009		
32324		Yao S.-G., Kodama R., Wang H., Ichii M., Taketa S., Yoshida H.	Analysis of the rice SHORT-ROOT5 gene revealed functional diversification of plant neutral/alkaline invertase family	Plant Sci.	176(5)	627-634	2009		
32325		Jain M.	Genome-wide identification of novel internal control genes for normalization of gene expression during various stages of development in rice	Plant Sci.	176(5)	702-706	2009		
32326		Hu W., Hu G., Han B.	Genome-wide survey and expression profiling of heat shock proteins and heat shock factors revealed overlapped and stress specific response under abiotic stresses in rice	Plant Sci.	176(4)	583-590	2009		
32328		Mohapatra P.K., Sarkar R.K., Kuanar S.R.	Starch synthesizing enzymes and sink strength of grains of contrasting rice cultivars	Plant Sci.	176(2)	256-263	2009		
32329		LI B.-z., MERRICK M., LI S.-m., LI H.-y., ZHU S.-w., SHI W.-m., SU Y.-h.	Molecular Basis and Regulation of Ammonium Transporter in Rice	Rice Science	16(4)	314-322	2009	AMT3;1,AMT4;1,AMT2;2,AMT5;2,AMT1;1,AMT5;1,AMT1;3,AMT3;3,AMT2;3,AMT2;1,AMT1;2,AMT3;2	OsAMT3;1, AMT3-1, OsAMT3.1, OsAMT2;2,OsAMT4, OsAMT4;1, AMT4-1,OsAMT2;2, AMT2;2, OsAMT2.2,OsAMT5.2, OsAMT5;2,OsAMT1;1, OsAMT1:1, OsAMT1, AMT1-1, AMT1, OsAMT1p, OsAMT1-1, Osamt1-1, "OsAMT1,1", OsAMT1.1, AMT1.1, FCO12,OsAMT5.1, OsAMT5;1,OsAMT1;3, AMT1-3, Osamt1-2, "OsAMT1,2", OsAMT1;2, OsAMT1.3, AMT1.2,OsAMT3;3, AMT3;3, OsAMT3.3,OsAMT2;3, AMT2;3, OsAMT2.3,OsAMT2;1, AMT2-1, OsAMT2.1, AMT2.1,OsAMT1;2, AMT1-2, Osamt1-3, "OsAMT1,3", OsAMT1;3, OsAMT1.3, OsAMT1.2, AMT1.2,AMT3;2, OsAMT3;2, OsAMT3.2
32330		WANG X.-g., JI Z.-j., CAI J., MA L.-y., LI X.-m., YANG C.-d.	Construction of Near Isogenic Lines for Pericarp Color and Evaluation on Their Near isogenicity in Rice	Rice Science	16(4)	261-266	2009		
32331		CHA-UM S., SUPAIBULWATTANA K., KIRDMANEE C.	Comparative Effects of Salt Stress and Extreme pH Stress Combined on Glycinebetaine Accumulation, Photosynthetic Abilities and Growth Characters of Two Rice Genotypes	Rice Science	16(4)	274-282	2009		
32332		FANG L.-k., SANG X.-c., YANG Z.-l., LIN Y.-h., WAN N., HE G.-h.	Genetic Analysis and Gene Mapping of a Rice Tiller Angle Mutant tac2	Rice Science	16(4)	323-326	2009		
32333		XIAO Y.-l., YU C.-y., LEI J.-g., LI M.-z., JIANG L., WAN J.-m.	Genetic Mechanism of Dominant Earliness in Kefeng A, a New Rice Cytoplasmic Male Sterile Line	Rice Science	16(4)	267-273	2009		
32334		WANG Z.-f., WANG J.-f., WANG F.-h., BAO Y.-m., WU Y.-y., ZHANG H.-s.	Genetic Control of Germination Ability under Cold Stress in Rice	Rice Science	16(3)	173-180	2009		
32335		WU K., RAO Y.-c., HU J., ZHU G.-l., ZHANG G.-h., HU X.-m., GUO L.-b., WANG Y.-h., QIAN Q., ZENG D.-l.	Characterization and Fine Mapping of Non-panicle Mutant (nop) in Rice	Rice Science	16(3)	165-172	2009		
32336		WEI K.-s., CHENG F.-m., ZHANG Q.-f., LIU K.-g.	Temperature Stress at Grain Filling Stage Mediates Expression of Three Isoform Genes Encoding Starch Branching Enzymes in Rice Endosperm	Rice Science	16(3)	187-193	2009		
32337		KONG Y., WANG Z., CHEN J., PAN X.-t., LIU D.-t., ZHANG E.-j.	Effects of Ethephon on Aerenchyma Formation in Rice Roots	Rice Science	16(3)	210-216	2009		
32338		Chen S., Cai S.-g., Chen X., Zhang G.-p.	Genotypic Differences in Growth and Physiological Responses to Transplanting and Direct Seeding Cultivation in Rice	Rice Science	16(2)	143-150	2009		
32339		Wang D., Sun S.-x., Gao F.-y., Lu X.-j., Li Z.-h., Ren G.-j.	Mapping a Rice Glabrous Gene Using Simple Sequence Repeat Markers	Rice Science	16(2)	93-98	2009		
32340		Liu Q.-h., Zhou X.-b., Yang L.-q., Li T.	Effects of Chalkiness on Cooking, Eating and Nutritional Qualities of Rice in Two indica Varieties	Rice Science	16(2)	161-164	2009		
32341		Chen T., Zhang Y.-d., Zhao L., Zhu Z., Lin J., Zhang S.-b., Wang C.-l.	A Cleaved Amplified Polymorphic Sequence Marker to Detect Variation in Wx Locus Conditioning Translucent Endosperm in Rice	Rice Science	16(2)	106-110	2009		
32342		GE C.-l., WANG Z.-g., WAN D.-z., DING Y., WANG Y.-l., SHANG Q., LUO S.-s.	Proteomic Study for Responses to Cadmium Stress in Rice Seedlings	Rice Science	16(1)	33-44	2009		
32343		LI J.-b., XIA M.-y., WAN B.-l., DU X.-s., ZHA Z.-p., YU D.-z., QI H.-x.	Genetic Analysis and Mapping of TWH Gene in Rice Twisted Hull Mutant	Rice Science	16(1)	79-82	2009		
32344		LIU W.-q., FAN Y.-y., CHEN J., SHI Y.-f., WU J.-l.	Avoidance of Linkage Drag Between Blast Resistance Gene and the QTL Conditioning Spikelet Fertility Based on Genotype Selection Against Heading Date in Rice	Rice Science	16(1)	21-26	2009		
32345		IKEHASHI H.	Why are There Indica Type and Japonica Type in Rice? - History of the Studies and a View for Origin of Two Types	Rice Science	16(1)	1-13	2009		
32346		LI D.-h., LIU H., YANG Y.-l., ZHEN P.-p., LIANG J.-s.	Down-Regulated Expression of RACK1 Gene by RNA Interference Enhances Drought Tolerance in Rice	Rice Science	16(1)	14-20	2009		
32347		JIANG J., ZHUANG J.-y., FAN Y.-y., SHEN B.	Mapping of QTLs for Leaf Malondialdehyde Content Associated with Stress Tolerance in Rice	Rice Science	16(1)	72-74	2009		
32348		ZHANG J.-z., LIU X., LI C., XIAO K., DONG Y.-j.	Genetic Analysis and Molecular Mapping of Light-Sensitive Red-Root Mutant in Rice	Rice Science	16(1)	27-32	2009		
32349		LI Y., XU P.-z., ZHANG H.-y., FU S.-h., YANG J., ZHANG R.-q., WU X.-j.	Characterization and Genetic Analysis of a Novel Mutant mst of Rice Defective in Flower Development	Rice Science	16(1)	75-78	2009		
32350	19010998	Huang S, Taylor NL, Narsai R, Eubel H, Whelan J, Millar AH.	Experimental analysis of the rice mitochondrial proteome, its biogenesis, and heterogeneity.	Plant Physiol.	149(2)	719-734	2009		
32353	15950602	Ikeda K, Nagasawa N, Nagato Y.	ABERRANT PANICLE ORGANIZATION 1 temporally regulates meristem identity in rice.	Dev. Biol.	282(2)	349-60.	2005	APO1	apo1(t), apo1, SCM2, SCM2/APO1, OsFbox321, Os_F0393, Pbl6/APO1, Pbl6, OsPbl6,  OsFBX202, FBX202
32354		Ganesh Kumar Agrawal, Nam-Soo Jwa, Shyam Kumar Agrawal, Shigeru Tamogami, Hitoshi Iwahashi, Randeep Rakwal	Cloning of novel rice allene oxide cyclase (OsAOC): mRNA expression and comparative analysis with allene oxide synthase (OsAOS) gene provides insight into the transcriptional regulation of octadecanoid pathway biosynthetic genes in rice	Plant Sci.	164(6)	979-992	2003	AOC,AOS1	OsAOC, AOC1, OsAOC1, HB, CPM2, OsAOC4, AOC4,OsAOS, OsAOS1, CYP74A1, OsAOS2, AOS2
32355	16452146	Thomson MJ, Edwards JD, Septiningsih EM, Harrington SE, McCouch SR.	Substitution mapping of dth1.1, a flowering-time quantitative trait locus (QTL) associated with transgressive variation in rice, reveals multiple sub-QTL.	Genetics	172(4)	2501-2514	2006	YL1	MTC, OsMTC, YGL8, OsYGL8, OsCRD1, CRD1, OsCRD, CRD, YL-1, PNZIP, OsPNZIP
32356	17166135	Tadege M, Sheldon CC, Helliwell CA, Upadhyaya NM, Dennis ES, Peacock WJ.	Reciprocal control of flowering time by OsSOC1 in transgenic Arabidopsis and by FLC in transgenic rice.	Plant Biotechnol J.	1(5)	361-9	2003	MADS50	OsMADS50, AGL20, SOC1, OsSOC1, RMADS208, OsSOC1/ OsMADS50/DTH3, DTH3, OsDTH3
32357	17185171	Xia JC, Wang YP, Ma BT, Yin ZQ, Hao M, Kong DW, Li SG	Ultrastructure and Gene Mapping of the Albino Mutant al12 in Rice (Oryza sativa L.)	Acta Genetica Sinica	33(12)	1112-1119	2006	AL12	al12
32358	20228626	Asano,K., Miyao,A., Hirochika,H., Kitano,H., Matsuoka,M. and Ashikari,M.	SSD1, which encodes a plant-specific novel protein, controls plant elongation by regulating cell division in rice	Proc. Jpn. Acad., Ser. B, Phys. Biol. Sci.	86(3)	265-273	2010	_	SSD1
32359	20188068	Banerjee,J. and Maiti,M.K.	Functional role of rice germin-like protein1 in regulation of plant height and disease resistance	Biochem. Biophys. Res. Commun.	394(1)	178-183	2010	GER5	OsGLP1, GLP1, GER1, GLP110, OsGER1, OsGER5, OsGLP8-14, GLP8-14, OsCDP8.14, CDP8.14
32361	20062805	Chen,S., Yao,H., Han,J., Liu,C., Song,J., Shi,L., Zhu,Y., Ma,X., Gao,T., Pang,X., Luo,K., Li,Y., Li,X., Jia,X., Lin,Y. and Leon,C.	Validation of the ITS2 region as a novel DNA barcode for identifying medicinal plant species	PLoS ONE	5 (1)	E8613	2010		
32362	19714315	Choi,M.S., Kim,Y.H., Park,H.M., Seo,B.Y., Jung,J.K., Kim,S.T., Kim,M.C., Shin,D.B., Yun,H.T., Choi,I.S., Kim,C.K. and Lee,J.Y.	Expression of BrD1, a plant defensin from Brassica rapa, confers resistance against brown planthopper (Nilaparvata lugens) in transgenic rices	Mol. Cells	28(2)	131-137	2009		
32363	0	Costanzo,S. and Jia,Y.	Sequence variation at the rice blast resistance gene Pi-km locus: Implications for the development of allele specific markers	Plant Sci.	178(6)	523-530	2010	PIKM,PIK	Pik-m, Pi-m, Pi-km, Pikm, Pi m, Pikm1-TS, Pikm2-TS, Pi-km1, Pi-km2,Pik, RMg8, Pi-k, Pik-2, Pik-1, Pik1, Pik2, Pik-H4, Pikp-1, Pikh-1, Pik1-H4, Pikh-2, Pik2-H4
32367	19674331	Gross,B.L., Skare,K.J. and Olsen,K.M.	Novel Phr1 mutations and the evolution of phenol reaction variation in US weedy rice (Oryza sativa)	New Phytol.	184(4)	842-850	2009	BHC	Ph=Bhc(Po), Bhc, Po, Ph, Bh3, PPO, Phr1, BH1
32368	19564155	Gu,X., Wages,C.J., Davis,K.E., Guyett,P.J. and Bar-Peled,M.	Enzymatic characterization and comparison of various poaceae UDP-GlcA 4-epimerase isoforms	J. Biochem.	146(4)	527-534	2009	_,_,_,UGLCAE2,_	OsUGlcAE1,OsUGlcAE3,OsUGlcAE4,OsUGlcAE2, OsUGA4E, UGA4E,OsUGlcAE5, UGlcAE5, OsSTA172
32370	19741004	Hirsch,C.D., Wu,Y., Yan,H. and Jiang,J.	Lineage-specific adaptive evolution of the centromeric protein CENH3 in diploid and allotetraploid Oryza species	Mol. Biol. Evol.	26(12)	2877-2885	2009	CENH3	OsCENH3, CenH3
32372	20003305	Jacquemin,J., Laudie,M. and Cooke,R.	A recent duplication revisited: phylogenetic analysis reveals an ancestral duplication highly-conserved throughout the Oryza genus and beyond	BMC Plant Biol	9	146	2009	CHC1,_,_,_,_,_,_,ZIFL10,_,_,_,_,_,_,ZIFL5,_,LACS7,LACS2	OsCHC1,,,,,,OsARAF3,OsZIFL10, Os-mfs2, mfs2,,,,,,RPL9, OsRPL9,OsZIFL5, OsTOM2, TOM2,,OsLACS7,OsLACS2, OsLACS6, LACS6
32374	15821864	Kant,C.R., Rao,B.J. and Sainis,J.K.	DNA binding and pairing activity of OsDmc1, a recombinase from rice	Plant Mol. Biol.	57(1)	1-11	2005	DMC1B,DMC1A	OsDMC1B, OsDmc1B, Dmc1B, RiLIM15B ,OsDMC1A, OsDmc1A, Dmc1A, DMC1, OsDMC1, RiLIM15A, OsRad51
32375	0	Komori,T., Miyata,M., Yamamoto,T., Nitta,N., Hiei,Y., Yano,M., Ueki,J. and Komari,T.	Isolation and functional analysis of the gene controlling the stub-spreading trait in rice (Oryza sativa L.)	Plant Breeding	128(6)	568-575	2009	SPK	Spk(t), Spk(t)*), Spk, OsTAC1, TAC1, qTAC9 
32377	0	Kushwaha,H., Gupta,N., Singh,V.K., Kumar,A. and Yadav,D.	In silico analysis of PCR amplified DOF (DNA binding with one finger) transcription factor domain and cloned genes from cereals and millets	Online J Bioinform	9(2)	130-143	2008		
32378	19958136	Lee,J.H., Muhsin,M., Atienza,G.A., Kwak,D.Y., Kim,S.M., De Leon,T.B., Angeles,E.R., Coloquio,E., Kondoh,H., Satoh,K., Cabunagan,R.C., Cabauatan,P.Q., Kikuchi,S., Leung,H. and Choi,I.R.	Single nucleotide polymorphisms in a gene for translation initiation factor (eIF4G) of rice (Oryza sativa) associated with resistance to Rice tungro spherical virus	Mol. Plant Microbe Interact.	23(1)	29-38	2010	_	eIF4Gtsv1, tsv1, eIF4G
32379	16215849	Li,K.G., Yang,J.S., Attia,K., Su,W., He,G.M. and Qian,X.Y.	Cloning and characterization of OsORC2, a new member of rice origin recognition complex	Biotechnol. Lett.	27(18)	1355-1359	2005	ORC2	OsORC2
32381	18726469	Liu,G., Yan,C., Zhai,W., He,P., Yang,J., Li,X. and Zhu,L.	Amplification, analysis and chromosome mapping of novel homeobox-containing and homeobox-flanking sequences in rice	Sci. China, C, Life Sciences	42(2)	162-170	1999	OSH10,KNAT7,OSH15,OSH1	OsH10, H10, HB412,HOS66, HB365, OsKNAT7,OSH15, OsH15, OSKN3, Oskn3, HOS3, D6, d6, OSH15/Oskn3, HB253, H15, OsKNOX3, KNOX3,OSKN1, Oskn1, OsKN1, OSH1/Oskn1, HB75
32382	15960615	Liu,H., Wang,S., Yu,X., Yu,J., He,X., Zhang,S., Shou,H. and Wu,P.	ARL1, a LOB-domain protein required for adventitious root formation in rice	Plant J.	43(1)	47-56	2005	CRL1	crl1, crl1*, ARL1, ARL1/CRL1, OsLBD3-2, LBD3-2, OsCRL1
32384	18758715	Liu,Z., Wang,J., Wang,Q., Huang,X., Xu,W., Zhu,L., He,P. and Fang,R.	Structure, expression pattern and chromosomal localization of the rice Osgrp-2 gene	Sci. China, C, Life Sciences	46(6)	584-594	2003	_	GRP, Osgrp-2, OsGRP-2, GRCWP, OsGRP2, GRP2
32386	18726210	Meng,Z., Liu,G., Xu,Z., Tang,G., Wang,N., Chen,R. and Zhu,L.	Structural and functional analysis of a MADS box containing genomic DNA sequence cloned from rice	Sci. China, C, Life Sciences	41(6)	561-568	1998	_	RgMADS1
32387	0	Pedro,P.M.	The impact of habitat fragmentation on a forest-exclusive species of Sabethes mosquito.	PhD Thesis  University of Leeds			2004		
32389	0	Rho,H.S., Heo,J.B., Bang,W.Y., Hwang,S.M., Nahm,M.Y., Kwon,H.J., Kim,S.W., Lee,B.H. and Bahk,J.D.	The role of OsPRA1 in vacuolar trafficking by OsRab GTPases in plant system	Plant Sci.	177(5)	411-417	2009	_,_,_,_,_,RAB7B3,GLUP4	OsRab11D1, OsRab11, Rab11, ric2,OsPRA1,OsRab1C3, OsRab1,OsRab2A1, OsRab2,OsRab5A1, OsRab5b, Rab5b,OsRab7B3, Rab7B3, OsRab7, Rab7,glup4(esp8), esp8, glup4, OsRab5B2, Rab5a, OsRab5a, GPA1/Rab5a, GPA, GLUP4/Rab5, GLUP4/Rab5a, GPA1, OsGPA1
32390	20220098	Sugimoto,K., Takeuchi,Y., Ebana,K., Miyao,A., Hirochika,H., Hara,N., Ishiyama,K., Kobayashi,M., Ban,Y., Hattori,T. and Yano,M.	Molecular cloning of Sdr4, a regulator involved in seed dormancy and domestication of rice	Proc. Natl. Acad. Sci. U.S.A.	107(13)	5792-5797	2010	SDR4,_,_,_,EXPB3,PIP2;2,PIP1;3,VP1,GNP1	Sdr4, OsSdr4, OsSdr4-n, OsSdr4-k, OsSdr4L, Sdr4L ,OsDOG1L-1,OsDOG1L-3,OsDOG1L-2, DOG1L-2,OsEXPB3, osaEXPb1.10, EXPb1.10,OsPIP2;2, PIP2-2, OsPIP2-3,OsPIP1;3. PIP1.3, PIP1-3, RWC3, RWC-3, OsPIP1-3,Vp1* (OSVP1), OsVP1, OsVp1, Vp1, ABI3, OsABI3, OsLFL4, OsVp-1, OSVP1,GA20OX1, OsGA20ox1, 20ox1, GA20ox-1, ga20ox1, Os20ox, C20OX2, OsGA20ox2, OsGA20ox-1, GA20ox1, OsGNP1
32391	19834537	Suzaki,T., Ohneda,M., Toriba,T., Yoshida,A. and Hirano,H.Y.	FON2 SPARE1 Redundantly Regulates Floral Meristem Maintenance with FLORAL ORGAN NUMBER2 in Rice	PLoS Genet.	5 (10)	E1000693	2009	FON2,_,FON1	fon2, OsFON2, FON4, OsFON4, FON2/FON4, TG1,FOS1, OsCLE202, CLE202,OsFON1, fon1, OsRLCK219, RLCK219
32392	19683587	Tang,L., Zou,X.H., Achoundong,G., Potgieter,C., Second,G., Zhang,D.Y. and Ge,S.	Phylogeny and biogeography of the rice tribe (Oryzeae): evidence from combined analysis of 20 chloroplast fragments	Mol. Phylogenet. Evol.	54(1)	266-277	2010	ATPF,_,_,_,_,RPS19,RPL33,_,_,CLPP,_,NDHF,_,_,NDHC,_,RPS16,RPS3,_,_,_,PETB,NDHA,YCF3,RPOB	atpF, OsatpF,trnS(UGA), trnS, trnS-UGA,trnfM(CAU), trnfM, trnfM-CAU,trnG(UCC), trnG, trnG-UCC,trnV, trnV(UAC), trnV-UAC,rps19,rpl33,rpl20,trnC, trnC(GCA), trnC-GCA,ORF216, ClpP, clpP,trnQ(UUG), trnQ, trnQ-UUG,ndhF,trnD(GUC), trnD, trnD-GUC,trnT(GGU), trnT, trnT-GGU,ndhC,trnL(UAA), trnL, trnL-UAA,rps16,rps3,atpI,matK, ORF542 ,atpB, AtpB, atpcf1, ATPbeta,petB, OsPETB,ndhA,ORF170, ycf3, IRF170, ycf3-1, ycf3-2,rpoB, RpoB, Rpobeta
32393	19781006	Thilmony,R., Guttman,M., Thomson,J.G. and Blechl,A.E.	The LP2 leucine-rich repeat receptor kinase gene promoter directs organ-specific, light-responsive expression in transgenic rice	Plant Biotechnol. J.	7(9)	867-882	2009	LP2	OsLP2
32394	20018713	Tian,Z., Qian,Q., Liu,Q., Yan,M., Liu,X., Yan,C., Liu,G., Gao,Z., Tang,S., Zeng,D., Wang,Y., Yu,J., Gu,M. and Li,J.	Allelic diversities in rice starch biosynthesis lead to a diverse array of rice eating and cooking qualities	Proc. Natl. Acad. Sci. U.S.A.	106(51)	21760-5	2009	FLO5,SSI,ALK,SBE3,SBE4,SSIVA,SSIIIB,SSIVB,SSIIC,SSIIB,GBSSII,AGPS1,AGPL3,WX1,PHS8,SBE1,ISA3,AGPL2,PUL,ISA2	OsSSIIIa, SSIII-2, OsSSIII-2, OsSS3A, SS3A, SS3a, OsSSSIIIa, SSIIIa, Flo5,OsSSI, SSS 1, SSS1, SS1, OsSS1, SSSI, OsSSSI,alk, SSII-3, OsSSIIa, OsSSII-3, SSIIa, SSS2A, OsSSIIaChr6, SS2a,SBEIII*, SBEIII, Sbe3, RBE3, QEIIa, QEIIA, BEIIb, BEIIB, SBEIIb, OsBEIIb, sbe3, SBE III, OsSBEIIb, SBEIIb,RBE4, OsSBE4, BEIIa, QEIIb, BEIIA, OsBEIIa,OsSSIVa, SSIV-1, OsSSIV-1,OsSSIIIb. SSIII-1, SSIIIa,OsSSIVb, SSIV-2, OsSSIV-2, SSIVb, SSIV-2, SSIV2, OsSSIV2,OsSSIIc, SSII-1, SSII1 ,OsSSIIb, OsSSII-2, SSII-2, SS2, OsSSSIIb, SS2b,GBSS2, OsGBSSII, OsGBSS2,OsAGPS1, APS1, OsAPS1, AGPsma,OsAGPL3, APL3, OsAPL3, AGPlar, OsAGPL1, AGPL1,wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx,ISA1, OsISA1, ISA, OsISA, PHS8/ISA1, OsPHS8, ISA I, OsISA I, ISAI, OsISAI,sbe1, Rbe1. Sbe1, sbe1*(QEI), RBE1, BEI, SBE I, QEI, OsBEI, BE1, OsSBE1, OsSBEI, SBEI,OsISA3,OsAGPL2, osagpl2, APL2, OsAPL2, AGPiso, sh2, Sh2, GIF2, GAS1 ,OsPUL, SDBE, OsPUL3, RE,OsISA2, ISA II, OsISA II
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32398	20080642	Yamagata,Y., Yamamoto,E., Aya,K., Win,K.T., Doi,K., Sobrizal, Ito,T., Kanamori,H., Wu,J., Matsumoto,T., Matsuoka,M., Ashikari,M. and Yoshimura,A.	Mitochondrial gene in the nuclear genome induces reproductive barrier in rice	Proc. Natl. Acad. Sci. U.S.A.	107(4)	1494-1499	2010	S27,S28,RPL27-2,RPL27-1	S27(t), S27(t)*,S28(t), rpl27-3, rpl27, mtRPL27a,rpl27-2, rpl27, mtRPL27a, S27, S27(t), S27(t)*,rpl27-1, rpl27, mtRPL27b, S27, S27(t), S27(t)*
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32406	0	M.N. Shrivastava, Arvind Kumar, Sandeep Bhandarkar,B.C. Shukla and K.C. Agrawal	A new gene for resistance in rice to Asian rice gall midge@(Orseolia oryzae Wood Mason) biotype 1 population at Raipur, India	Euphytica	130	143-145	2003	GM9	Gm9, Gm9(t)
32407		K. Renganayaki, Allan K. Fritz, S. Sadasivam, Sujata Pammi, Sandra E. Harrington, Susan R. McCouch, S. Mohan Kumar and Avutu Sam Reddy	Mapping and Progress toward Map-Based Cloning of Brown Planthopper Biotype-4@Resistance Gene Ingrogressed from Oryza officinalis into Cultivated Rice, O. sativa	Crop Sci.	42	2112-2117	2002	BPH13	Bph13(t)
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32409	20305120	Hui Zhang, Wanqi Liang, Xijia Yang, Xue Luo, Ning Jiang, Hong Ma, and Dabing Zhang.	Carbon Starved Anther Encodes a MYB Domain Protein That Regulates Sugar Partitioning Required for Rice Pollen Development.	Plant Cell	22	672-689	2010	MST8,CSA	OsMST8, OSMST8, OsSTP8, STP8,csa, OsCSA
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32470		Maekawa-M, Tsugane-K, Iida-S.	Chromosomal location of an autonomous element for transposition of nDart, a DNA trasnposon in rice	Breeding Research	vol. 6 (Suppl.2)	63	2004	NDART1	nDart, nDART1, nDART
32471	11470159	Washio K.	Identification of Dof proteins with implication in the gibberellin-regulated expression of a peptidase gene following the germination of rice grains.	Biochim. Biophys. Acta	1520(1)	54-62.	2001	RPBF,RDD1,DOF4,DOF1,DOF5	OsDof3, OsDOF3, OsEnS-34, OsDof10, Dof10, OsDof-10, OsDOF1, DOF1, DOF3, OsRPBF, OsDOF7,OsDof2, OsDof9, Dof9, OsDof-9, DLN64, OsDLN64, OsDof8, Dof8,OsDof4, OsDof8, Dof8, OsDof-8, DOF8, OsDof10, Dof10,OsDof1,OsDof5, OsDof6, Dof6, OsDof-6, DOF6
32472	12877745	Lijavetzky D, Carbonero P, Vicente-Carbajosa J.	Genome-wide comparative phylogenetic analysis of the rice and Arabidopsis Dof gene families.	BMC Evol. Biol.	3	17.	2003	DOF5,DOF24,DOF7,DOF14,DOF11,DOF13,DOF16,DOF19,DOF20,DOF29,DOF21,DOF25,DOF27,DOF28,DOF30,RDD2,SP3,RDD4,DOF18,RPBF,DOF2,RDD1,DOF4,_,DOF22,_,DOF3,DOF17,_,RDD3	OsDof5, OsDof6, Dof6, OsDof-6, DOF6,OsDof24, Dof24, OsDof-24, OsDof25, Dof25,OsDof7, Dof7, OsDof-7, OsDOF11, DOF11, OsDof9, Dof9,OsDof14, Dof14, OsDof-14, OsDof12, Dof12,OsDof11, Dof11, OsDof-11, OsDof13, Dof13,OsDof13, Dof13, OsDof-13, OsDof14, Dof14,OsDof16, Dof16, OsDof-16,OsDof19, Dof19, OsDof-19 ,OsDof20, Dof20, OsDof-20, OsDof21, Dof21,OsDof29, Dof29, OsDof-29, OsDof20, Dof20, CRPG562, OsCRPG562,OsDof21, Dof21, OsDof-21, OsCDF2, CDF2, OsDof22, Dof22,OsDof25, Dof25, OsDof-25, OsDof26, Dof26,OsDof27, Dof27, OsDof-27, OsDof28, Dof28,OsDof28, Dof28, OsDof-28, OsDof29, Dof29,OsDof30, Dof30, OsDof-30 ,OsDof23, Dof23, OsDof-23, OsDof1, OsCDF3, CDF3, OsDof24, Dof24,OsDof15, Dof15, OsDof-15, DOF15,OsDof12, Dof12, OsDof-12, OsCDF1, OsCDF1/OsDOF12, OsDOF12, CDF1, DOF12, OsDof11, Dof11,OsDof18, Dof18, OsDof-18, DLN119, OsDLN119, OsDof17, Dof17,OsDof3, OsDOF3, OsEnS-34, OsDof10, Dof10, OsDof-10, OsDOF1, DOF1, DOF3, OsRPBF, OsDOF7,OsDof, OsDof2, Dof2, OsDof-2,OsDof2, OsDof9, Dof9, OsDof-9, DLN64, OsDLN64, OsDof8, Dof8,OsDof4, OsDof8, Dof8, OsDof-8, DOF8, OsDof10, Dof10,OsDof1, Dof1, OsDof-1, OsDof6, Dof6,OsDof22, Dof22, OsDof-22, OsDof23, Dof23,OsDof4, Dof4, OsDof-4, Dof-4, OsDof3, Dof3,OsDof3, Dof3, OsDof-3, OsDof1,OsDof17, Dof17, OsDof-17, OsDof18, Dof18,OsDof5, Dof5, OsDof-5, OsDof4, Dof4,OsDof26, Dof26, OsDof-26, OsDof27, Dof27
32473	20057139	Konishi T, Miyazaki Y, Yamakawa S, Iwai H, Satoh S, Ishii T.	Purification and biochemical characterization of recombinant riceUDP-arabinopyranose mutase generated in insect cells.	Biosci. Biotechnol. Biochem.	74(1)	191-4.	2010	UAM1,UAM2,UAM3	OsUAM1, RGP-1, Osgls1,OsUAM2,OsUAM3
32474	17182701	Konishi T, Takeda T, Miyazaki Y, Ohnishi-Kameyama M, Hayashi T, O'Neill MA, Ishii T.	A plant mutase that interconverts UDP-arabinofuranose and UDP-arabinopyranose.	Glycobiology	17(3)	345-54.	2007	UAM3,UAM1,UAM2	OsUAM3,OsUAM1, RGP-1, Osgls1,OsUAM2
32475	16537113	Louis-Philippe Hamel, Marie-Claude Nicole, Somrudee Sritubtim,Marie-JoseLe Morency, Margaret Ellis, Juergen Ehlting,Nathalie Beaudoin Brad Barbazuk, Dan Klessig, Justin Lee,Greg Martin, John Mundy, Yuko Ohashi, Dierk Scheel, Jen Sheen,Tim Xing, Shuqun Zhang, Armand Seguin and Brian E. Ellis	Ancient signals: comparative genomics of plant MAPK and MAPKK gene families	Trends Plant Sci.	11	192-8	2006	MKK3,MKK10-2,MKK5,SMG1,MKK6,MKK10-1,MKK1	OsMKK3, OsMAPKK3, MAPKK3, OsMEK8a, MEK8a, OsMEK3, MEK3,OsMKK10-2, MKK10-2D, OsMPKK10-2, MPKK10-2, OsMKK10.2, MKK10.2, OsMPKK10-2D, MPKK10-2D, MPKK10.2, OsMAPKK10-2, MAPKK10-2, OsMEK3. MEK3,OsMKK5, BUD1, OsBUD1,OsMKK4, MKK4, OsMKK4/SMG1, OsMAPKK4, MAPKK4, OsMEK4, MEK4, OsSMG1, SMG1/OsMEK6, OsMEK6, MEK6, OsSTS, STS,OsMKK6, OsMEK1, MEK1, OsMAPKK6, MAPKK6, OsMPKK6, MPKK6, OsMAP1, MAP1,OsMKK10-1, MPKK10.1 ,OsMKK1, OsMEK2, MEK2, OsMAPKK1, MAPKK1, OsMAP2K2, MAP2K2
32476		Khun LH., Miyaji S., Motomura K., Murayama S., Adaniya S., Nose A	Trisomic analysis of new gene for late heading in rice, Oryza sativa L.	Euphytica	151	235-241	2006	EF6	ef6
32477		M. Gowda, S.Roy-Barman and B.B.Chattoo	Molecular mapping of a novel blast resistance gene Pi38 in rice using SSLP and AFLP markers	Plant Breeding	125	596-599	2006	PI38	Pi38, Pi-38
32478		Deen, R., K. Ramesh, S.K. Gautam, Y.K. Rao, V.J. Lakshmi, B.C. Viraktamath,D.S. Brar and T. Ram	Identification of new gene for BPH resistance introgressed O. rufipogon.	RGN	25	70-71	2010	BPH23,BPH24	Bph23(t),Bph24(t)
32479		Ram, T., R. Deen, S.K. Gautam, K. Ramesh, Y.K. Rao and D.S. Brar	Identification of new genes for brown planthopper resistance in rice introgressed from O. glaberrima and O. minuta.	RGN	25	67-68	2010		
32482	19819927	Scafaro A.P., Haynes P.A., Atwell B.J.	Physiological and molecular changes in Oryza meridionalis Ng., a heat-tolerant species of wild rice	Journal of Experimental Botany	61	191-202	2010		
32485	19858118	Jagadish S.V.K., Muthurajan R., Oane R., Wheeler T.R., Heuer S., Bennett J., Craufurd P.Q.	Physiological and proteomic approaches to address heat tolerance during anthesis in rice (Oryza sativa L.)	Journal of Experimental Botany	61	143-156	2010		
32489	19921249	Guo J., Wang F., Song J., Sun W., Zhang X.S.	The expression of Orysa;CycB1;1 is essential for endosperm formation and causes embryo enlargement in rice	Planta.	231	293-303	2010	CYCB1;1	CycB1;1, CycB1;os;1, Orysa;CycB1;1, OsCycB1;1, CyclaZm, CYCIaZm, OsCYCIaZm, OsCYCB1;4
32494	19933315	Mizutani M., Naganuma T., Tsutsumi K.-I., Saitoh Y.	The syncytium-specific expression of the Orysa;KRP3 CDK inhibitor: Implication of its involvement in the cell cycle control in the rice (Oryza sativa L.) syncytial endosperm	Journal of Experimental Botany	61	791-798	2010	CYCB2;2,KRP3,CYCD2;1,CYCA1;1,CDC2-2,KRP5,CDKB2;1 ,KRP4,KRP1,CDC2-1,KRP6	cycB2;2 (=cycOs2), cycB2;2, cycOs2, CycB2;2, CycOs2, CYCB2-2, CYCOS2, CycB2-Os2, CYCB2, CycB2;os;2, OsCycB2;2, Orysa;CycB2;2, OsCYCOS2, Os;cycB2;2, CYCB2.2, OsCYCB2.2,OsiICK3, Orysa;KRP3, OrysaICK3, Orysa;ICK3,CycD2;1, CYCD2-1, OsCYCD2-1, Orysa;CycD2;1, Orysa;CYCD2;1, Orysa;CycD2;2, OsCYCD2;2, CYCD2;2,CycA1;1, CycA1;os;1, Orysa;CycA1;1, CYCA2.3, OscycA1;1, CYCA1-1, OsCYCA1-1,cdc2Os-2, CDC2Os-2, CDKA-2, CDKA;2, Orysa;CDKA;2, Rcdc2-2, OsCDKA;2, OsCDKA2, CDKA2, CDKA;1, OsCDKA;1, CDC20S-2, OsCDC20S-2,OsiICK5, Orysa;KRP5, OrysaICK5, Orysa;ICK5, OsKRP5, OsICK5, ICK5 ,Orysa;CDKB2;1, OsCDKB2;1, cdc2Os3, Oscdc20s-3, cdc20s-3, Orysa;CDKB;2, CYCB2.1, CDKB-2, OsCDKB-2,OsiICK6, Orysa;KRP4, OrysaICK6, Orysa;ICK6, OsKRP4, OsICK6, ICK6,OsiICK1, Orysa;KRP1, OrysaICK1, Orysa;ICK1, CDKI, OsICK1, ICK1, OsKRP1,cdc2Os-1, CDC2Os-1, CDKA-1, CDKA;1, Orysa;CDKA;1, OsCDKA;1, cdc2Os1, Rcdc2-1, OsCDKA1, CDKA1, CDC20S-1, OsCDC20S-1 ,OsiICK4, Orysa;KRP6, OrysaICK4, Orysa;ICK4, OsKRP6, OsKRP5
32495	19939835	Haro R., Banuelos M.A., Rodriguez-Navarro A.	High-affinity sodium uptake in land plants	Plant Cell Physiol.	51	68-79	2010		
32502	20018899	Zang A., Xu X., Neill S., Cai W.	Overexpression of OsRAN2 in rice and Arabidopsis renders transgenic plants hypersensitive to salinity and osmotic stress	Journal of Experimental Botany	61	777-789	2010	RAN2	OsRAN2
32503	20022921	Mao X., Zhang H., Tian S., Chang X., Jing R.	TaSnRK2.4, an SNF1-type serine/threonine protein kinase of wheat (Triticum aestivum L.), confers enhanced multistress tolerance in Arabidopsis	Journal of Experimental Botany	61	683-696	2010		
32504	20022924	Ishikawa S., Abe T., Kuramata M., Yamaguchi M., Ando T., Yamamoto T., Yano M.	A major quantitative trait locus for increasing cadmium-specific concentration in rice grain is located on the short arm of chromosome 7	Journal of Experimental Botany	61	923-934	2010		
32509	20080824	Wang J,Gao X,Li L,Shi X,Zhang J,Shi Z	Overexpression of Osta-siR2141 caused abnormal polarity establishment and retarded growth in rice.	J. Exp. Bot.	61	1885-95	2010		
32510	20081045	Secco D,Baumann A,Poirier Y	Characterization of the rice PHO1 gene family reveals a key role for OsPHO1;2 in phosphate homeostasis and the evolution of a distinct clade in dicotyledons.	Plant Physiol.	152	1693-704	2010	PHO1;1 CIS-NAT,PHO1;3 CIS-NAT,PHO1;2 CIS-NAT,PHO1;2,PHO1;3,PHO1;1	OsPHO1;1 cis-NAT,OsPHO1;3 cis-NAT,OsPHO1;2 cis-NAT, cis-NAT PHO1;2, cisNATpho1.2, cis-NATpho1.2,OsPHO1;2, PHO1.2, OsPHO1.2, PHO1,OsPHO1;3, OsPHT1,OsPHO1;1
32511	20097791	Mustroph A,Lee SC,Oosumi T,Zanetti ME,Yang H,Ma K,Yaghoubi-Masihi A,Fukao T,Bailey-Serres J	Cross-kingdom comparison of transcriptomic adjustments to low-oxygen stress highlights conserved and plant-specific responses.	Plant Physiol.	152	1484-500	2010		
32512	20100339	Yun K.-Y., Park M.R., Mohanty B., Herath V., Xu F., Mauleon R., Wijaya E., Bajic V.B., Bruskiewich R., de los Reyes B.G.	Transcriptional regulatory network triggered by oxidative signals configures the early response mechanisms of japonica rice to chilling stress	BMC Plant Biol		16	2010		
32513	20107022	Jung KH,Seo YS,Walia H,Cao P,Fukao T,Canlas PE,Amonpant F,Bailey-Serres J,Ronald PC	The submergence tolerance regulator Sub1A mediates stress-responsive expression of AP2/ERF transcription factors.	Plant Physiol.	152	1674-92	2010	DREB1A,FZP,SUB1C,DREB1C,EBP-89,EREBP1,SUB1B,DREB1B,ERF3	OsDREB1A, Os DREB1A, CBF3, OsCBF3, OsDREB1A/OsCBF3, ERF24, OsERF24, OsERF024, OsERF#024, AP2/EREBP#114, AP2/EREBP114, OsDREBL,fzp*, fzp, OsBD1, BD1, OsERF#078, OsERF078, OsERF78, ERF78, AP2/EREBP#133, AP2/EREBP133, BFL1, SGDP7, OsSGDP7,Sub1C, OsSUB1C, OsERF#073, OsERF073, ERF073, OsERF73, ERF73, AP2/EREBP#122, AP2/EREBP122, SUB1B,OsDREB1C, CBF1, ERF26, OsERF026, OsERF#026, OsERF26, AP2/EREBP#098, AP2/EREBP98, OsCBF2, CBF2,OsEBP-89, ebp-89, OsERF#060, OsERF060, OsERF60, ERF60, AP2/EREBP#027, AP2/EREBP27, OsEBP89, DLN76, OsDLN76,OsEREBP1, OsERF#070, OsERF070, OsERF70, ERF70, AP2/EREBP#084, AP2/EREBP84,Sub1B, OsSUB1B, OsERF#063, OsERF063, ERF063, OsERF63, ERF63, AP2/EREBP#166, AP2/EREBP166,OsDREB1B, ERF31, OsERF031, OsERF#031, OsERF31, AP2/EREBP#169, AP2/EREBP169, OsDREB1b, OsDREB1C, OsCBF1, CBF1,AP37, OsAP37, OsERF3, OsERF#075, OsERF075, OsERF75, ERF75, AP2/EREBP#004, AP2/EREBP4, OsBIERF2, BIERF2, DLN23, OsDLN23
32514	20109239	Jain M., Ghanashyam C., Bhattacharjee A.	Comprehensive expression analysis suggests overlapping and specific roles of rice glutathione S-transferase genes during development and stress responses	BMC Genomics	11	73	2010	GSTU36,GSTU45,GSTF1,EF1G2,GSTF2,GSTF12,GSTU28,GSTU9,GSTU14,GSTU20,DHAR2,GSTU32,GSTU31,GSTU22,GSTF3,GSTU25,RPP31,GSTU27,GSTU8,GSTU49,EEF1BG,GSTU19,GSTF14,GSTU2,GSTU42,GSTU47,GSTU18,GSTU12,GSTU35,GSTU52,GSTZ2,GSTU51,GSTU39,GSTZ1,GSTU26,GSTU3,GSTU23,GSTU30,GSTF4,GSTF7,GSTF8,GSTF9,GSTF13,GSTF16,GSTF15,GSTF17,GSTT1,GSTU16,GSTU24,GSTU21,GSTU44,GSTU6,GSTU7,GSTU1,GSTU5,GSTU10,GSTF10,GSTF11,DHAR1,GSTU38,GSTU33,GSTU40,GSTU41,GSTU46,GSTU43,GSTU48,GSTZ3,TCHQD1,GSTZ4,GSTU13,GSTU4,GSTU37,GSTU50,GSTU17,GSTF5,GSTU34,GSTU15,GSTU11	OsGSTU36,OsGSTU45,OsGSTF1, RGSI,OsEF1G2,OsGSTF2, RGSTII,OsGSTF12, OsEnS-7,OsGSTU28,OsGSTU9,OsGSTU14,OsGSTU20,OsDHAR2,OsGSTU32,OsGSTU31,OsGSTU22,OsGSTF3, gstf3,OsGSTU25,OsRPP31, OsGSTF6, GSTF6,OsGSTU27,OsGSTU8, OsGST35, GST35,OsGSTU49,eEF1Bgamma, EF-1gamma, OsEF1G1, EF1G1,OsGSTU19, GSTU6, OsGSTU6, OsGSTU6.1, GSTU6.1,OsGSTF14, GST14,OsGSTU2, ParC,OsGSTU42,OsGSTU47,OsGSTU18, OsGSTU7, GSTU7,OsGSTU12, OsGSTU6.2, GSTU6.2,OsGSTU35,OsGSTU52,OsGSTZ2, GSTZ-2,OsGSTU51,OsGSTU39,OsGSTZ1, GSTZ-1,OsGSTU26,OsGSTU3, OsGSTU29, GSTU29,OsGSTU23,OsGSTU30,OsGSTF4,OsGSTF7,OsGSTF8,OsGSTF9,OsGSTF13,OsGSTF16,OsGSTF15,OsGSTF17,OsGSTT1,OsGSTU16,OsGSTU24,OsGSTU21,OsGSTU44,OsGSTU6,OsGSTU7,OsGSTU1,OsGSTU5,OsGSTU10,OsGSTF10,OsGSTF11, OsGST4,OsDHAR1, DHAR, cytDHAR, OscytDHAR, OsDHAR,OsGSTU38,OsGSTU33,OsGSTU40,OsGSTU41,OsGSTU46,OsGSTU43,OsGSTU48,OsGSTZ3,OsTCHQD1,OsGSTZ4,OsGSTU13,OsGSTU4, GST4,OsGSTU37,OsGSTU50,OsGSTU17, OsGST23, GST23 ,OsGSTF5, OsGST F5,OsGSTU34,OsGSTU15,OsGSTU11
32515	20122142	Zhou Y.-L., Xu M.-R., Zhao M.-F., Xie X.-W., Zhu L.-H., Fu B.-Y., Li Z.-K.	Genome-wide gene responses in a transgenic rice line carrying the maize resistance gene Rxo1 to the rice bacterial streak pathogen, Xanthomonas oryzae pv. oryzicola	BMC Genomics	11	78	2010		
32516	20130099	Su CF,Wang YC,Hsieh TH,Lu CA,Tseng TH,Yu SM	A novel MYBS3-dependent pathway confers cold tolerance in rice.	Plant Physiol.	153	145-58	2010	MDR7,WRKY77,AMY3D,DREB1B,TPP1,DREB1A,TPP2,MYBS3	MDR4, OsABCB5, ABCB5, OsPGP5, OsMDR7, OsISC28, MRP4, OsMRP4, OsABCB11, ABCB11, MR7, OsMR7,OsWRKY77, WRKY-77,Amy3D/E*(RAmy3D/E), alpha Amy3, AmyII-4, AMY1.3, Amy3D, Amy3D/E*, RAmy3D/E, Amy3D_E, Amy8, aAmy3, RAmy3D, OsAmy3D, alphaAmy3, OsRamy3D,OsDREB1B, ERF31, OsERF031, OsERF#031, OsERF31, AP2/EREBP#169, AP2/EREBP169, OsDREB1b, OsDREB1C, OsCBF1, CBF1,OsTPP1, OsTPS, TPP,OsDREB1A, Os DREB1A, CBF3, OsCBF3, OsDREB1A/OsCBF3, ERF24, OsERF24, OsERF024, OsERF#024, AP2/EREBP#114, AP2/EREBP114, OsDREBL,OsTPP2,OsMYBS3
32517	20130100	De Vleesschauwer D,Yang Y,Cruz CV,Hofte M	Abscisic acid-induced resistance against the brown spot pathogen Cochliobolus miyabeanus in rice involves MAP kinase-mediated repression of ethylene signaling.	Plant Physiol.	152	2036-52	2010		
32518	20135324	Gao P,Bai X,Yang L,Lv D,Li Y,Cai H,Ji W,Guo D,Zhu Y	Over-expression of osa-MIR396c decreases salt and alkali stress tolerance.	Planta.	231	991-1001	2010		
32519	20141629	Singh A., Singh U., Mittal D., Grover A.	Genome-wide analysis of rice ClpB/HSP100, ClpC and ClpD genes	BMC Genomics	11	95.	2010	ERD1,CLPC1,HSP101,CLPC2,CLPC4,FLO24,CLPD2,CLPC3,CLPB-M	CLPD1, ClpD1, OsERD1, OSClpD, osClpD, OsClpD1, OsClpD1.1, OsClpD1.2, OsClpD1.3, OsClpD1.4 ,ClpC1,Oshsp101, OsHSP101, ClpB-cyt, OsClpB-cyt, ClpB-C/Hsp100, OsClpB-C,ClpC2,ClpC4,ClpB-c, OsClpB-c, OsFLO24, HSP101, OsHSP101,ClpD2, OsClpD2 ,ClpC3, OsCLPC3,ClpB-m, OsClpB-m
32520	20167122	Sakai H., Itoh T.	Massive gene losses in Asian cultivated rice unveiled by comparative genome analysis	BMC Genomics	11	121.	2010		
32521	20193092	Das S., Sen S., Chakraborty A., Chakraborti P., Maiti M.K., Basu A., Basu D., Sen S.K.	An unedited 1.1 kb mitochondrial orfB gene transcript in the wild abortive cytoplasmic male sterility (WA-CMS) system of Oryza sativa L. subsp. indica.	BMC Plant Biol	10	39-	2010	_,_,_,_	atp9, RMtATP9, aatp9,atp6, N-atp6, B-ATP6, B-atp6, atp6-1,atpA, RMtATPa ,orfB, atp8 
32522	20213122	Ray S,Patra B,Das-Chatterjee A,Ganguli A,Majumder AL	Identification and organization of chloroplastic and cytosolic L-myo-inositol 1-phosphate synthase coding gene(s) in Oryza sativa: comparison with the wild halophytic rice, Porteresia coarctata.	Planta.	231	1211-27	2010	INO2,INO1	OsINO2, RINO2, OsINO1-2,OsINO1, MIPS, IPS, RINO1, OsINO1-1, OsRINO1, OsMIPS1, MIPS1
32523	20214804	Tam P.P., Barrette-Ng I.H., Simon D.M., Tam M.W., Ang A.L., Muench D.G.	The Puf family of RNA-binding proteins in plants: phylogeny, structural modeling, activity and subcellular localization.	BMC Plant Biol	10	44	2010		
32524	20222994	Bernard V., Brunaud V., Lecharny A.	TC-motifs at the TATA-box expected position in plant genes: A novel class of motifs involved in the transcription regulation	BMC Genomics	11	166	2010		
32525	20231330	Kim JY,Kim WY,Kwak KJ,Oh SH,Han YS,Kang H	Glycine-rich RNA-binding proteins are functionally conserved in Arabidopsis thaliana and Oryza sativa during cold adaptation process.	J. Exp. Bot.	61	2317-25	2010	GRP3,GRP1,GRP2,GRP4,GRP5,GRP6	OsGRP3, RTP, RBP-152 ,OsGRP1,OsGRP2,OsGRP4,OsGRP5,OsGRP6, GRRBP7
32526	20298594	Romeuf I., Tessier D., Dardevet M., Branlard G., Charmet G., Ravel C.	WDBTF: An integrated database resource for studying wheat transcription factor families	BMC Genomics	11	185	2010		
32527	20335401	Jeong JS,Kim YS,Baek KH,Jung H,Ha SH,Do Choi Y,Kim M,Reuzeau C,Kim JK	Root-specific expression of OsNAC10 improves drought tolerance and grain yield in rice under field drought conditions.	Plant Physiol.	153	185-97	2010	NAC122	OsNAC10, NAC10, ONAC122, NAC122, OsSNAC10, SNAC10
32528	20346185	Fujii S., Kazama T., Yamada M., Toriyama K.	Discovery of global genomic re-organization based on comparison of two newly sequenced rice mitochondrial genomes with cytoplasmic male sterility-related genes	BMC Genomics	11	209	2010	RPS2,_,_,_,_,RPS1,_,_,_,_	rps2, rps2a, rps2b,ORF79, orf79,rpl5, rpl5-1,orf152b, orf152b-1, orf152,orf224, orf224a, orf224b,rps1, rps1a, rps1b, rps1-1,atp6, N-atp6, B-ATP6, B-atp6, atp6-1,cox3, coxIII, cox3a, cox3b, cox3c,orf288, LD-orf310,atp1, atp1-1, ATP1
32529	20353606	Narsai R,Ivanova A,Ng S,Whelan J	Defining reference genes in Oryza sativa using organ, development, biotic and abiotic transcriptome datasets.	BMC Plant Biol	10	56	2010		
32530	20357136	Hinz M,Wilson IW,Yang J,Buerstenbinder K,Llewellyn D,Dennis ES,Sauter M,Dolferus R	Arabidopsis RAP2.2: an ethylene response transcription factor that is important for hypoxia survival.	Plant Physiol.	153	757-72	2010		
32531	20357140	Kurusu T,Hamada J,Nokajima H,Kitagawa Y,Kiyoduka M,Takahashi A,Hanamata S,Ohno R,Hayashi T,Okada K,Koga J,Hirochika H,Yamane H,Kuchitsu K	Regulation of microbe-associated molecular pattern-induced hypersensitive cell death, phytoalexin production, and defense gene expression by calcineurin B-like protein-interacting protein kinases, OsCIPK14/15, in rice cultured cells.	Plant Physiol.	153	678-92	2010	KS4,CIPK14,CHT1,CPS2,CPS4,CBL2,PR10A,CBL5,SOS3,CBL3,CBL6,KS7,CIPK15	OsKS4, KS4, KSL4, OsKSL4, DTS2, OsDTS2, OsTPS16, TPS16, TPS8, OsTPS8,OsCIPK14, OsSnRK3.33, SnRK3.33,Cht1*(Chi1), Ch16, Cht1, CHT-1, CH16, RC24, OsChia1a, OsChia1, Chi1, Cht1*, Chi-1, Cht-1, Cht1, RCC1, OsCht-1, PR3, OsPR3,OsCPS2, cps2, OsCPS2ent, CYC2, OsCyc2, OsCYC2, OsCPSL1, cpsl1, OsCyc2/OsCPS2, OsTPS7, Os-CPS2, TPS13, OsTPS13,OsCPS4, CYC1, OsCYC1, OsCyc1, cpsl3, OsCPSL3, OsCPSsyn, OsCyc1/OsCPS4, OsTPS15, Os-CPS4, TPS11, OsTPS11,OsCBL2,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsCBL5,CBL4, OsCBL4, OsSOS3,OsCBL3,OsCBL6,OsKS7, KS7, KSL7, OsKSL7, DTC1, OsDTC1, OsKS3, OsDTC1/OsKS7, OsTPS6, TPS6, TPS38, OsTPS38,OsCIPK15, OsSnRK3.31, SnRK3.31
32532	20395452	Gao X,Liang W,Yin C,Ji S,Wang H,Su X,Guo C,Kong H,Xue H,Zhang D	The SEPALLATA-like gene OsMADS34 is required for rice inflorescence and spikelet development.	Plant Physiol.	153	728-40	2010		
32533	20421194	Ohara K,Sasaki K,Yazaki K	Two solanesyl diphosphate synthases with different subcellular localizations and their respective physiological roles in Oryza sativa.	J. Exp. Bot.	61(10)	2683-92.	2010	GGPPS2,GGPPS1,FPPS3,FPPS2,SPS2,FPPS1,SPS1	OsGGPPS2, OsGRP, GRP, OsGGPPS1, GGPPS1,OsGGPPS1,OsFPPS3, OsFPS5, FPS5,OsFPPS2, OsFPS2, FPS2,OsSPS2,OsFPPS1, FPPS, OsFPS,OsSPS1
32534	20423940	Ma H,Zhao J	Genome-wide identification, classification, and expression analysis of the arabinogalactan protein gene family in rice (Oryza sativa L.).	J. Exp. Bot.	61(10)	2647-68	2010	ENODL1,_,ENODL6,_,AGP9,AGP20,FLA6,FLA3,FLA5,AGP10,FLA23,AGP22,AGP21,AGP18,AGP11,AGP14,FLA11,AGP25,AGP27,FLA4,AGP13,FLA12,FLA13,AGP1,FLA21,FLA26,FLA22,FLA16,AGP23,AGP15,FLA14,_,AGP6,AGP5,AGP2,AGP4,FLA2,FLA27,AGP29,AGP7,AGP3,FLA8,AGP17,AGP24,FLA18,FLA17,AGP8,AGP12,AGP19,FLA20,ENODL18,FLA15,AGP16,_,_,_,_,FLA7,FLA19,AGP31,AGP26,AGP28,FLA10,FLA1,FLA9,_,FLA24,AGP30,FLA25	OsENODL1, OsELA1, ELA1,OsLLA1, OsLTPG6, OsLTPg6, OsLTPL1, LLA1, LTPG6, LTPg6, LTPL1,OsENODL6, OsELA2, ELA2, OsEnS-24,OsLLA2, OsLTPG27, LLA2, LTPG27,OsAGP9,OsAGP20,OsFLA6,OsFLA3,OsFLA5,OsAGP10,OsFLA23,OsAGP22,OsAGP21,OsAGP18,OsAGP11,OsAGP14, OsAGPEP2,OsFLA11,OsAGP25,OsAGP27,OsFLA4,OsAGP13,OsFLA12,OsFLA13,OsAGP1,OsFLA21,OsFLA26,OsFLA22,OsFLA16,OsAGP23,OsAGP15,OsFLA14,OsLLA8, LLA8, OsHyPRP27, HyPRP27,OsAGP6,OsAGP5,OsAGP2,OsAGP4,OsFLA2,OsFLA27,OsAGP29,OsAGP7,OsAGP3,OsFLA8,OsAGP17,OsAGP24,OsFLA18,OsFLA17,OsAGP8,OsAGP12,OsAGP19, OsAGPEP1,OsFLA20,OsENODL18, OsELA3, ELA3, EN20, OsEN20,OsFLA15,OsAGP16,OsLLA4, LLA4, OsHyPRP20, HyPRP20,OsLLA3, LLA3, OsHyPRP15, HyPRP15,OsLLA7, OsLTPG21, OsLTPg21, LLA7, LTPG21, LTPg21, OsHyPRP25, HyPRP25,OsLLA5, LLA5, OsHyPRP21, HyPRP21,OsFLA7,OsFLA19,OsAGP31, OsGP1, GP1,OsAGP26,OsAGP28,OsFLA10,OsFLA1,OsFLA9,OsLLA6, OsLTPG14, OsLTPg14, LLA6, LTPG14, LTPg14,OsFLA24,OsAGP30, DLN50, OsDLN50,OsFLA25
32535	20441221	Emami K,Morris NJ,Cockell SJ,Golebiowska G,Shu QY,Gatehouse AM	Changes in protein expression profiles between a low phytic acid rice ( Oryza sativa L. Ssp. japonica) line and its parental line: a proteomic and bioinformatic approach.	J. Agric. Food Chem.	58	6912-22	2010		
32536	20472577	Quinet M,Ndayiragije A,Lefevre I,Lambillotte B,Dupont-Gillain CC,Lutts S	Putrescine differently influences the effect of salt stress on polyamine metabolism and ethylene synthesis in rice cultivars differing in salt resistance.	J. Exp. Bot.	61(10)	2719-33	2010	PAOA,_,ODCB,ADC2,ADC1,ODCA,PAOB	PAOa, OsPAO2, PAO2, OsPAOa,DAO,ODCb, OsODC3, ODC3, OsODC1, ODC1,ADCa, OsAdc2, OsADC2,OsADC1, ARGDC, ADC, OsAdc1,ODCa, OsODC1, ODC1 ,PAOb, OsPAOb, OsPAO6, OsPAO2, PAO6, PAO2
32537	20472752	Carretero-Paulet L,Galstyan A,Roig-Villanova I,Martinez-Garcia JF,Bilbao-Castro JR,Robertson DL	Genome-wide classification and evolutionary analysis of the bHLH family of transcription factors in Arabidopsis, poplar, rice, moss, and algae.	Plant Physiol.	153(3)	1398-412	2010		
32538	20484022	Wang P,Gao J,Wan C,Zhang F,Xu Z,Huang X,Sun X,Deng X	Divinyl chlorophyll(ide) a can be converted to monovinyl chlorophyll(ide) a by a divinyl reductase in rice.	Plant Physiol.	153(3)	994-1003	2010	DVR	OsDVR
32539	20487558	Zhao X,Huang J,Yu H,Wang L,Xie W	Genomic survey, characterization and expression profile analysis of the peptide transporter family in rice (Oryza sativa L.).	BMC Plant Biol	10	92	2010		
32540	20507633	Wei LQ,Xu WY,Deng ZY,Su Z,Xue Y,Wang T	Genome-scale analysis and comparison of gene expression profiles in developing and germinated pollen in Oryza sativa.	BMC Genomics	11	338	2010		
32542		Telebanco-Yanoria M.J., Koide Y., Fukuta Y., Imbe T., Tsunematsu H., Kato H., Ebron L.A., Nguyen T.M.N., Kobayashi N.	A set of near-isogenic lines of Indica-type rice variety CO 39 as differential varieties for blast resistance	Molecular Breeding		1-17	2010	PI1	Pi1, Pi-1, Pi1-5C, Pi1-6C
32544		Devi T.A., Sarla N., Siddiq E.A., Sirdeshmukh R.	Activity and expression of adenosine diphosphate glucose pyrophosphorylase in developing rice grains: Varietal differences and implications on grain filling	Plant Science	178	123-129	2010		
32545		Faivre-Rampant O., Bruschi G., Abbruscato P., Cavigiolo S., Picco A.M., Borgo L., Lupotto E., Piffanelli P.	Assessment of genetic diversity in Italian rice germplasm related to agronomic traits and blast resistance (Magnaportheoryzae)	Molecular Breeding		1-14	2010		
32546		Piao Z., Li M., Li P., Zhang J., Zhu C., Wang H., Luo Z., Lee J., Yang R.	Bayesian dissection for genetic architecture of traits associated with nitrogen utilization efficiency in rice	African Journal of Biotechnology	8	6834-6839	2009		
32547	20385545	Larre C., Penninck S., Bouchet B., Lollier V., Tranquet O., Denery-Papini S., Guillon F., Rogniaux H.	Brachypodium distachyon grain: Identification and subcellular localization of storage proteins	Journal of Experimental Botany	61	1771-1783	2010		
32548		Wei X., Liu L., Xu J., Jiang L., Zhang W., Wang J., Zhai H., Wan J.	Breeding strategies for optimum heading date using genotypic information in rice	Molecular Breeding	25(2)	287-298	2010		
32549		Negrao S., Palaniappan J., Maroco J., Lourenco T., Mackill D., Oliveira M.M.	Bridging sd1 molecular knowledge with recent breeding strategies for the improvement of traditional rice varieties - A Japonica case-study	African Journal of Biotechnology	9	2192-2200	2010		
32550	20305271	Nakamura Y., Utsumi Y., Sawada T., Aihara S., Utsumi C., Yoshida M., Kitamura S.	Characterization of the reactions of starch branching enzymes from rice endosperm	Plant Cell Physiol.	51	776-794	2010		
32553		Liu T., Zhang Y., Xue W., Xu C., Li X., Xing Y.	Comparison of quantitative trait loci for 1,000-grain weight and spikelets per panicle across three connected rice populations	Euphytica	175	383-394	2010		
32554		Rafique M.Z., Zia M., Rashid H., Chaudhary M.F., Chaudhry Z.	Comparison of transgenic plant production for bacterial blight resistance in Pakistani local rice (Oryza sativa L.) cultivars	African Journal of Biotechnology	9	1892-1904	2010		
32555		Zhu T., Wang W., Wong H.-L., Yang X., Wang K., Cui Z.	Construction of gateway-compatible yeast two-hybrid vectors for high throughput analysis of protein interaction	African Journal of Biotechnology	9	1392-1396	2010		
32556	20145904	Hori K., Sugimoto K., Nonoue Y., Ono N., Matsubara K., Yamanouchi U., Abe A., Takeuchi Y., Yano M.	Detection of quantitative trait loci controlling pre-harvest sprouting resistance by using backcrossed populations of japonica rice cultivars	Theor. Appl. Genet.	120	1547-57	2010	HYPRP5	qLTG-3-1(t), qLTG3-1, OsHyPRP05, OsHyPRP5, HyP/GRP05, HyP/GRP5
32558		Chen M.-H., Fjellstrom R.G., Christensen E.F., Bergman C.J.	Development of three allele-specific codominant rice Waxy gene PCR markers suitable for marker-assisted selection of amylose content and paste viscosity	Molecular Breeding	26(3)	513-523	2010		
32559	20012086	Piston F., Uauy C., Fu L., Langston J., Labavitch J., Dubcovsky J.	Down-regulation of four putative arabinoxylan feruloyl transferase genes from family PF02458 reduces ester-linked ferulate content in rice cell walls	Planta.	231	677-691	2010	AT7,AT8,AT9,AT10	OsAT7, OsAt7,OsAT8, OsAt8,OsAT9, OsAt9,OsAT10, OsAt10
32560		Wang Y., Zha X., Zhang S., Qian X., Dong X., Sun F., Yang J.	Down-regulation of the OsPDCD5 gene induced photoperiod-sensitive male sterility in rice	Plant Science	178	221-228	2010		
32562		Hakim M.A., Juraimi A.S., Begum M., Hanafi M.M., Ismail M.R., Selamat A.	Effect of salt stress on germination and early seedling growth of rice (Oryza sativa L.)	African Journal of Biotechnology	9	1911-1918	2010		
32563		Hu H., You J., Fang Y., Zhu X., Qi Z., Xiong L.	Erratum to Characterization of transcription factor gene SNAC2 conferring cold and salt tolerance in rice (Plant Mol Biol, (2008), 67, (169-181), 10.1007/s11103-008-9309-5)	Plant Mol. Biol.	72	567-568	2010		
32564		Chin J.H., Lu X., Haefele S.M., Gamuyao R., Ismail A., Wissuwa M., Heuer S.	Erratum to Development and application of gene-based markers for the major rice QTL Phosphorus uptake 1 (Theor Appl Genet, 10.1007/s00122-009-1235-7)	Theor. Appl. Genet.	120	1087-1088	2010		
32565		Ishimoto M., Rahman S.M., Hanafy M.S., Khalafalla M.M., El-Shemy H.A., Nakamoto Y., Kita Y., Takanashi K., Matsuda F., Murano Y., Funabashi T., Miyagawa H., Wakasa K.	Evaluation of amino acid content and nutritional quality of transgenic soybean seeds with high-level tryptophan accumulation	Molecular Breeding	25(2)	313-326	2010		
32566		Sikdar Md.S.I., Kim J.-S.	Expression of a natural fusion gene for uracil phosphoribosyltransferase and uridine kinase from rice shows growth retardation by 5-fluorouridine or 5-fluorouracil in Escherichia coli	African Journal of Biotechnology	9	1295-1303	2010		
32567	20512559	Zhou L., Zeng Y., Zheng W., Tang B., Yang S., Zhang H., Li J., Li Z.	Fine mapping a QTL qCTB7 for cold tolerance at the booting stage on rice chromosome 7 using a near-isogenic line	Theor. Appl. Genet.	121	895-905	2010		
32568	19946705	Wang Y., Zhong Z.Z., Zhao Z.G., Jiang L., Bian X.F., Zhang W.W., Liu L.L., Ikehashi H., Wan J.M.	Fine mapping of a gene causing hybrid pollen sterility between Yunnan weedy rice and cultivated rice (Oryza sativa L.) and phylogenetic analysis of Yunnan weedy rice	Planta.	231	559-570	2010		
32569		Zhu J., Zhou Y., Liu Y., Wang Z., Tang Z., Yi C., Tang S., Gu M., Liang G.	Fine mapping of a major QTL controlling panicle number in rice	Molecular Breeding		1-10	2010		
32570		Chi X.-F., Zhou X.-S., Shu Q.-Y.	Fine mapping of a xantha mutation in rice (Oryza sativa L.)	Euphytica	172	215-220	2010		
32571		Uga Y., Okuno K., Yano M.	Fine mapping of Sta1, a quantitative trait locus determining stele transversal area, on rice chromosome 9	Molecular Breeding	26(3)	533-538	2010		
32572		Obara M., Tamura W., Ebitani T., Yano M., Sato T., Yamaya T.	Fine-mapping of qRL6.1, a major QTL for root length of rice seedlings grown under a wide range of NH<sub>4</sub><sup>+</sup> concentrations in hydroponic conditions	Theor. Appl. Genet.	121	535-547	2010		
32573		Kongprakhon P., Cuesta-Marcos A., Hayes P.M., Hongtrakul V., Sirithunya P., Toojinda T., Sangduen N.	Four QTL in Rice associated with broad spectrum resistance to blast isolates from Rice and Barley	J. Phytopathol.	158	125-131	2010		
32574		Sikdar Md.S.I., Kim J.-S.	Functional analysis of a gene encoding threonine synthase from rice	African Journal of Biotechnology	9	1122-1129	2010		
32575		Bal E.B.B., Bay S.	Genetic analysis of Turkish rice varieties (Oryza sativa L.) using seed storage proteins and RAPD markers	European Food Research and Technology	230	609-617	2010		
32576	20155410	Ingvardsen C.R., Xing Y., Frei U.K., Lubberstedt T.	Genetic and physical fine mapping of Scmv2, a potyvirus resistance gene in maize	Theor. Appl. Genet.	120	1621-34	2010		
32577		Kumar P., Pathania S., Katoch P., Sharma T.R., Plaha P., Rathour R.	Genetic and physical mapping of blast resistance gene Pi-42(t) on the short arm of rice chromosome 12	Molecular Breeding	25(2)	217-228	2010	PI42	Pi42(t), Pi-42(t)
32578		Zhou J., Xu P., Deng X., Li J., Hu F., Ren G., Zhang Z., Luan Y., Deng W., Zhao Z., Jiang L., Wan J., Tao D.	Genetic dissection of a chromosomal region conferring hybrid sterility using multi-donors from Oryza glaberrima	Euphytica	175	395-407	2010		
32579	20364375	Jin L., Lu Y., Xiao P., Sun M., Corke H., Bao J.	Genetic diversity and population structure of a diverse set of rice germplasm for association mapping	Theor. Appl. Genet.	121	475-87	2010		
32580		Ngangkham U., Parida S.K., De S., Anand Raj Kumar K., Singh A.K., Singh N.K., Mohapatra T.	Genic markers for wild abortive (WA) cytoplasm based male sterility and its fertility restoration in rice	Molecular Breeding	26(2)	275-292	2010	NAD1,_,_,_,_,_,_,18S  rRNA,_,RF1,RF1B,_,_,_,_,_,_,RPS3,_,_,NAD4,_	nad1, Osnad1, nadI, nadIB,Rf4, Rf-4, PPR782a, PPR9, PPR3,cob, cob-1, cob-like, cyt c,PPR458, PPR7, PPR4,PPR8,atp9, RMtATP9, aatp9,PPR13,rrn18,PPR11,Rf1 (Rf-1), rf-1, PPR791, PPR8-1, Rf-1, Rf1, Rf-1A, Rf5, Rf1a, RF5, Rf5(t)*(Rf(t)*), RF1A, PPR6, PLS31, OsPLS31,RF1b, Rf-1B, PPR7,PPR454, PPR10, PPR2,PPR794, PPR6, PPR6-794, PPR5,PPR1,PPR9,PPR10,PPR12,rps3,coxI, COX1, cox1-1, cox1,cox3, coxIII, cox3a, cox3b, cox3c,nad4, nadIV,atp6, N-atp6, B-ATP6, B-atp6, atp6-1
32581	20383562	Umate P., Tuteja R., Tuteja N.	Genome-wide analysis of helicase gene family from rice and Arabidopsis: a comparison with yeast and human	Plant Mol. Biol.	73(4-5)	449-465	2010		
32582		Iwata H., Ebana K., Uga Y., Hayashi T., Jannink J.-L.	Genome-wide association study of grain shape variation among Oryza sativa L. germplasms based on elliptic Fourier analysis	Molecular Breeding	25(2)	203-215	2010		
32583	20194922	Yu L., Jiang J., Zhang C., Jiang L., Ye N., Lu Y., Yang G., Liu E., Peng C., He Z., Peng X.	Glyoxylate rather than ascorbate is an efficient precursor for oxalate biosynthesis in rice	Journal of Experimental Botany	61	1625-1634	2010		
32584	20155303	Hu J., Zhu L., Zeng D., Gao Z., Guo L., Fang Y., Zhang G., Dong G., Yan M., Liu J., Qian Q.	Identification and characterization of NARROW ANDROLLED LEAF 1, a novel gene regulating leaf morphology and plant architecture in rice	Plant Mol. Biol.	73(3)	283-92	2010	ND1	CSLD4, OsCSLD4, OsCD1, CD1, DNL3, OsDNL3, NRL1, OsNRL1, SPO1, OsSPO1, SPO1/OsCSLD4
32585		Miyashita Y., Takasugi T., Ito Y.	Identification and expression analysis of PIN genes in rice	Plant Science	178	424-428	2010	PIN8,PIN5B,PIN1A,PIN9,PIN5C,PIN10A,PIN1B,LRA1,PIN5A,PIN10B,PIN1C,PIN1D	OsPIN8,PIN5C, OsPIN5c, OsPIN5b, PIN4,PIN1C, OsPIN1C, OsPIN1c, OsPIN1a,OsPIN9,PIN5B, OsPIN5b, OsPIN5c,PIN3A, OsPIN3a, OsPIN3t, OsPIN10a, OsPIN3,PIN1A, OsPIN1A, OsPIN1a, REH1, OsPIN1, OsPIN1b, REH1/OsPIN1,OsPIN2, PIN2, OsLRA1, WAR1, OsWAR1,OsPIN5a, OsPIN6,PIN3B, OsPIN3b, OsPIN10b,PIN1B, OsPIN1B, OsPIN1b, OsPIN1c,OsPIN1D, OsPIN1d
32586		Qiu B., Zhou W., Xue D., Zeng F., Ali S., Zhang G.	Identification of Cr-tolerant lines in a rice (Oryza sativa) DH population	Euphytica	174	199-207	2010		
32587		Parihar A., Pathak A.R., Parihar P.	Identification of RAPD marker for the White Backed Plant Hopper (WBPH) resistant gene in rice	African Journal of Biotechnology	9	1423-1426	2010		
32588		Wang Y., Zhang G., Du J., Liu B., Wang M.	Influence of transgenic hybrid rice expressing a fused gene derived from cry1Ab and cry1Ac on primary insect pests and rice yield	Crop Protection	29	128-133	2010		
32589	20217123	Crofts A.J., Crofts N., Whitelegge J.P., Okita T.W.	Isolation and identification of cytoskeleton-associated prolamine mRNA binding proteins from developing rice seeds	Planta.	231	1261-1276	2010	GL11	OsGL11, RBPA, OsRBPA, RBP-A, OsRBP-A
32590	20424856	Sato K., Suzuki R., Nishikubo N., Takenouchi S., Ito S., Nakano Y., Nakaba S., Sano Y., Funada R., Kajita S., Kitano H., Katayama Y.	Isolation of a novel cell wall architecture mutant of rice with defective Arabidopsis COBL4 ortholog BC1 required for regulated deposition of secondary cell wall components	Planta.	232	257-270	2010		
32591		Saito K., Hayano-Saito Y., Kuroki M., Sato Y.	Map-based cloning of the rice cold tolerance gene Ctb1	Plant Science	179	97-102	2010		
32592		Chen L., Zhao Z., Liu X., Liu L., Jiang L., Liu S., Zhang W., Wang Y., Liu Y., Wan J.	Marker-assisted breeding of a photoperiod-sensitive male sterile japonica rice with high cross-compatibility with indica rice	Molecular Breeding		1-12	2010		
32593		Basavaraj S.H., Singh V.K., Singh A., Singh A., Singh A., Anand D., Yadav S., Ellur R.K., Singh D., Gopala Krishnan S., Nagarajan M., Mohapatra T., Prabhu K.V., Singh A.K.	Marker-assisted improvement of bacterial blight resistance in parental lines of Pusa RH10, a superfine grain aromatic rice hybrid	Molecular Breeding	26(2)	293-305	2010		
32594	20164144	Frei M., Tanaka J.P., Chen C.P., Wissuwa M.	Mechanisms of ozone tolerance in rice: Characterization of two QTLs affecting leaf bronzing by gene expression profiling and biochemical analyses	Journal of Experimental Botany	61	1405-1417	2010		
32595	20091293	Jordan D.R., Mace E.S., Henzell R.G., Klein P.E., Klein R.R.	Molecular mapping and candidate gene identification of the Rf2 gene for pollen fertility restoration in sorghum [Sorghum bicolor (L.) Moench]	Theor. Appl. Genet.	120	1279-87	2010		
32596		Koppel R., Zimmerli F., Breitenmoser A.	Multiplex real-time PCR for the simultaneous detection and quantification of DNA from three transgenic rice species and construction and application of an artificial oligonucleotide as reference molecule	European Food Research and Technology	230	731-736	2010		
32597		Ye H., Foley M.E., Gu X.-Y.	New seed dormancy loci detected from weedy rice-derived advanced populations with major QTL alleles removed from the background	Plant Science	179	612-619	2010		
32598		Tacconi G., Baldassarre V., Lanzanova C., Faivre-Rampant O., Cavigiolo S., Urso S., Lupotto E., Vale G.	Polymorphism analysis of genomic regions associated with broad-spectrum effective blast resistance genes for marker development in rice	Molecular Breeding	26(4)	595-617	2010	PI9,PIZ,PI1	Pi9(t), Pi9(t)*, Pi9, Pi-9(t),Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2,Pi1, Pi-1, Pi1-5C, Pi1-6C
32599		Shivrain V.K., Burgos N.R., Sales M.A., Kuk Y.I.	Polymorphisms in the ALS gene of weedy rice (Oryza sativa L.) accessions with differential tolerance to imazethapyr	Crop Protection	29	336-341	2010		
32600		Kim S.-G., Lee S., Ryu J., Park C.-M.	Probing protein structural requirements for activation of membrane-bound NAC transcription factors in Arabidopsis and rice	Plant Science	178	239-244	2010		
32601		Roy R., Chakraborty S., Sharma G.D.	Proline, catalase and root traits as indices of drought resistance in bold grained rice (Oryza sativa) genotypes	African Journal of Biotechnology	8	6521-6528	2009		
32602		Wen F.-p., Zhang Z.-h., Bai T., Xu Q., Pan Y.-h.	Proteomics reveals the effects of gibberellic acid (GA<sub>3</sub>) on salt-stressed rice (Oryza sativa L.) shoots	Plant Science	178	170-175	2010		
32603	20473653	Ye G., Liang S., Wan J.	QTL mapping of protein content in rice using single chromosome segment substitution lines	Theor. Appl. Genet.	121	741-50	2010		
32604		Angaji S.A., Septiningsih E.M., Mackill D.J., Ismail A.M.	QTLs associated with tolerance of flooding during germination in rice (Oryza sativa L.)	Euphytica	172	159-168	2010		
32605		Laza M.R.C., Kondo M., Ideta O., Barlaan E., Imbe T.	Quantitative trait loci for stomatal density and size in lowland rice	Euphytica	172	149-158	2010		
32606	20369251	Hirano K., Kotake T., Kamihara K., Tsuna K., Aohara T., Kaneko Y., Takatsuji H., Tsumuraya Y., Kawasaki S.	Rice BRITTLE CULM 3 (BC3) encodes a classical dynamin OsDRP2B essential for proper secondary cell wall synthesis	Planta.	232	95-108	2010	BC3	bc3, bc-3, OsDRP2B, DRP2B
32607	20512651	Uchiumi T., Okamoto T.	Rice fruit development is associated with an increased IAA content in pollinated ovaries	Planta.	232	579-92	2010		
32608		Liu G., Mei H., Liu H., Yu X., Zou G., Luo L.	Sensitivities of rice grain yield and other panicle characters to late-stage drought stress revealed by phenotypic correlation and QTL analysis	Molecular Breeding	25(4)	603-613	2010		
32610		Singh A., Singh P.K., Singh R., Pandit A., Mahato A.K., Gupta D.K., Tyagi K., Singh A.K., Singh N.K., Sharma T.R.	SNP haplotypes of the BADH1 gene and their association with aroma in rice (Oryza sativa L.)	Molecular Breeding	26(2)	325-338	2010		
32611		Liu J., Liang D., Song Y., Xiong L.	Systematic identification and expression analysis of BREVIS RADIX-like homologous genes in rice	Plant Science	178	183-191	2010	BRXL1,BRXL2,BRXL3,BRXL4,BRXL5.P,BRXL5	OsBRXL1,OsBRXL2,OsBRXL3,OsBRXL4,OsBRXL5.P, OsBRXL5,OsBRXL5
32612	20396901	Liu S., Jia J., Gao Y., Zhang B., Han Y.	The AtTudor2, a protein with SN-Tudor domains, is involved in control of seed germination in Arabidopsis	Planta.	232	197-207	2010		
32613		Asante M.D., Kovach M.J., Huang L., Harrington S., Dartey P.K., Akromah R., Semon M., McCouch S.	The genetic origin of fragrance in NERICA1	Molecular Breeding	26(3)	419-424	2010		
32614		Gangadhara, Kumar P.R., Prakash V.	The structure functional catalytic activity of rice bran lipase in the presence of selenium and lithium	European Food Research and Technology	230	551-557	2010		
32615		Singh A., Singh U., Mittal D., Grover A.	Transcript expression and regulatory characteristics of a rice glycosyltransferase OsGT61-1 gene	Plant Science	179	114-122	2010		
32616		Chen S.-Y., Lin Y.-T., Lin C.-W., Chen W.-Y., Yang C.H., Ku H.-M.	Transferability of rice SSR markers to bamboo	Euphytica	175	23-33	2010		
32617		Li X., Cao K., Wang C., Sun Z.-W., Yan L.	Variation of photosynthetic tolerance of rice cultivars (Oryza sativa L.) to chilling temperature in the light	African Journal of Biotechnology	9	1325-1337	2010		
32618		Ikuo Ando, Hiroyuki Sato, Noriaki Aoki, Yasuhiro Suzuki, Hideyuki Hirabayashi, Makoto Kuroki, Hiroyuki Shimizu, Tsuyu Ando and Yoshinobu Takeuchi	Genetic analysis of the low-amylose characteristics of rice cultivars Oborozuki and Hokkai-PL9	Breeding Science	60	187-194	2010	qAC9.3,WX1	,wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx
32619		Xiao, W.a , Yang, Q.b , Wang, H.a , Guo, T.a , Liu, Y.a , Zhu, X.b , Chen, Z.	Identification and fine mapping of a resistance gene to Magnaporthe oryzae in a space-induced rice mutant	Molecular Breeding	Article in press	1-10	2010	PI46	Pi46(t)
32620	18944325	Chuntai Wang, Mingpu Tan, Xin Xu, Guosong Wen, Duanpin Zhang, and Xinghua Lin	Localizing the Bacterial Blight Resistance Gene, Xa22(t), to a 100-Kilobase Bacterial Artificial Chromosome	Phytopathology	93(10)	258-1262	2003	XA22	Xa22, Xa22*, RXa20, Xa(t), Xa22(t)
32621		Xin Xu, N. Hayashi, C. T. Wang, H. Kato, T. Fujimura and S. Kawasaki	Efficient authentic fine mapping of the rice blast resistance gene Pik-h in the Pik cluster, using new Pik-h -differentiating isolates	Molecular Breeding	22(2)	289-299	2008	PIKH	Pi-kh, Pi k-h, Pi54, Pi54rh, Pi-k(h), Pik-h, Pikh
32622	21048083	Mizuta Y, Harushima Y, Kurata N.	Rice pollen hybrid incompatibility caused by reciprocal gene loss of duplicated genes.	Proc. Natl. Acad. Sci. U.S.A.	107(47)	20417-22	2010	DPL1,DPL2	,
32623		F. Lin , Y. Liu , L. Wang , X. Liu ,  and Q. Pan	A high-resolution map of the rice blast resistance gene Pi15 constructed by sequence-ready markers	Plant Breeding	126	287-290	2007	PI15	Pi15(t), Pi15, RMg34.
32624		PAN Qing-Hua, HU Zhen-Di, Tanisaka TAKATOSHI, WANG Ling	Fine Mapping of the Blast Resistance Gene Pi15, Linked to Pii, on Rice Chromosome 9	Acta Bot. Sin.	45(7)	871-877	2003	PI5-2,PI3,PI15,PII2,PII	Pi3, Pi5, Pi-3(t), Pi-3, Pi3(t), Pi5(t), Pi5-2, Pii,  RMg22, RMg21,Pi3, Pi5, Pi-3(t), Pi-3, Pi3(t), Pi5(t), Pi5-1, Pii,  RMg22, RMg21,Pi15(t), Pi15, RMg34.,Pi i2, Pii2, Pii2(t),Pi i, Pii, Pi-i, Pii(t)
32625		Robert Fjellstrom, Concetta A. Conaway-Bormans, Anna M. McClung, Marco A. Marchetti, A. obert Shank and William D. Park	Development of DNA Markers Suitable for Marker Assisted Selection of Three Pi Genes Conferring esistance to Multiple Pyricularia grisea Pathotypes	Crop Sci.	44	1790-1798	2004	PIK,PIKS,PITA,PIB,PIKH,PITQ5	Pik, RMg8, Pi-k, Pik-2, Pik-1, Pik1, Pik2, Pik-H4, Pikp-1, Pikh-1, Pik1-H4, Pikh-2, Pik2-H4,Pi-ks, Pi-s, Pik-s, Piks,Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30, Trx30,Pi b(Pi s), Pis, Pib, Pi-s, Pi-hy,Pi-kh, Pi k-h, Pi54, Pi54rh, Pi-k(h), Pik-h, Pikh,Pitq5*, Pi-tq5, Pi-tq5, Pitq-5, Pitq5
32626	20872166	Iwamoto M, Takano M.	Phytochrome-regulated EBL1 contributes to ACO1 upregulation in rice.	Biotechnol. Lett.	33(1)	173-178	2010	ACS2,EIN2,ERF59,ACS3,ACS4,SSG6,ACO1,ACS5,ACS1	OsACS2, Os-ACS2,OsEIN2, MHZ7/OsEIN2, OsEIN2/MHZ7, MHZ7 ,OsERF#059, OsERF059, OsERF59, EBL1, AP2/EREBP#006, AP2/EREBP6,ACC3*, ACC3, OsACS3, OS-ACS3, OsACC3,OsACS4, OS-ACS4,OsACS6, ACS6,OsACO1, ACO,OsACS5, OS-ACS5, OsBphi008a,ACC1*, OsACS1, Os-ACS1, ACC1, OsACC1
32627	20419467	Lee S,Jeong HJ,Kim SA,Lee J,Guerinot ML,An G	OsZIP5 is a plasma membrane zinc transporter in rice.	Plant Mol. Biol.	73(4-5)	507-17	2010		
32628	20478970	Liang J,Zhao L,Challis R,Leyser O	Strigolactone regulation of shoot branching in chrysanthemum (Dendranthema grandiflorum).	J. Exp. Bot.	61(11)	3069-78	2010		
32629	20498060	Xie W,Feng Q,Yu H,Huang X,Zhao Q,Xing Y,Yu S,Han B,Zhang Q	Parent-independent genotyping for constructing an ultrahigh-density linkage map based on population sequencing.	Proc. Natl. Acad. Sci. U.S.A.	107(23)	10578-83	2010		
32630	20530196	Park M,Yim HK,Park HG,Lim J,Kim SH,Hwang YS	Interference with oxidative phosphorylation enhances anoxic expression of rice alpha-amylase genes through abolishing sugar regulation.	J. Exp. Bot.	61(12)	3235-44	2010		
32631	20542917	Zhang M,Wu YH,Lee MK,Liu YH,Rong Y,Santos TS,Wu C,Xie F,Nelson RL,Zhang HB	Numbers of genes in the NBS and RLK families vary by more than four-fold within a plant species and are regulated by multiple factors.	Nucleic Acids Res.	38(19)	6513-25	2010		
32632	20543848	Itoh H,Nonoue Y,Yano M,Izawa T	A pair of floral regulators sets critical day length for Hd3a florigen expression in rice.	Nat Genet	42(7)	635-8	2010	GHD7,GI,HD3A	Ghd2, Ghd7, OsGhd7, OsCCT26, OsCMF8, OsI, Ghd7/Hd4, Hd4, EH7-1/Hd4, Ghd7-0a, EH7-1, EH7/Ghd7, EH7, OsEH7, GLW7.1, OsGLW7.1,OsGI, Gi, Os-GI,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a 
32633	20559817	Wiebe K,Harris NS,Faris JD,Clarke JM,Knox RE,Taylor GJ,Pozniak CJ	Targeted mapping of Cdu1, a major locus regulating grain cadmium concentration in durum wheat (Triticum turgidum L. var durum).	Theor. Appl. Genet.	121(6)	1047-58	2010		
32634	20563548	Liu WX,Liu HL,Chai ZJ,Xu XP,Song YR,Qu LQ	Evaluation of seed storage-protein gene 5' untranslated regions in enhancing gene expression in transgenic rice seed.	Theor. Appl. Genet.	121(7)	1267-74	2010	ACT2	OsACT2, Act2
32635	20565843	Liu Q,Zhang C,Yang Y,Hu X	Genome-wide and molecular evolution analyses of the phospholipase D gene family in Poplar and Grape.	BMC Plant Biol	10	117	2010		
32636	20570296	Wakuta S,Hamada S,Ito H,Matsuura H,Nabeta K,Matsui H	Identification of a beta-glucosidase hydrolyzing tuberonic acid glucoside in rice (Oryza sativa L.).	Phytochemistry	71(11-12)	1280-8	2010	BGLU13	OsTAGG1, TAGG1, Os4BGlu13, 4BGlu13
32637	20576316	Hossain MA,Cho JI,Han M,Ahn CH,Jeon JS,An G,Park PB	The ABRE-binding bZIP transcription factor OsABF2 is a positive regulator of abiotic stress and ABA signaling in rice.	J. Plant Physiol.	167(17)	1512-20	2010	BZIP46	ABL1, bZIP46, OsABL1, OsbZIP46, OsAREB8, OsABF2, ABF2, OsABF3, ABF3, OsbZIP46CA1, OsZIP46, ZIP46, OsbZIP46/OsABF2
32638	20580124	Sperotto RA,Boff T,Duarte GL,Santos LS,Grusak MA,Fett JP	Identification of putative target genes to manipulate Fe and Zn concentrations in rice grains.	J. Plant Physiol.	167(17)	1500-6	2010		
32639	20589366	Hayashi K,Yasuda N,Fujita Y,Koizumi S,Yoshida H	Identification of the blast resistance gene Pit in rice cultivars using functional markers.	Theor. Appl. Genet.	121(7)	1357-67	2010	PIT	Pit, Pit(K59), Pit(Npb), Pi-t, PitNpb, PitK59, Pit1, OsPit1
32640	20591144	Sharma S,Sreenivasulu N,Harshavardhan VT,Seiler C,Sharma S,Khalil ZN,Akhunov E,Sehgal SK,Roder MS	Delineating the structural, functional and evolutionary relationships of sucrose  phosphate synthase gene family II in wheat and related grasses.	BMC Plant Biol	10	134	2010		
32641	20602115	Pandit A,Rai V,Bal S,Sinha S,Kumar V,Chauhan M,Gautam RK,Singh R,Sharma PC,Singh AK,Gaikwad K,Sharma TR,Mohapatra T,Singh NK	Combining QTL mapping and transcriptome profiling of bulked RILs for identification of functional polymorphism for salt tolerance genes in rice (Oryza sativa L.).	Mol. Genet. Genomics	284(2)	121-36	2010		
32642	20607290	Fujino K,Wu J,Sekiguchi H,Ito T,Izawa T,Matsumoto T	Multiple introgression events surrounding the Hd1 flowering-time gene in cultivated rice, Oryza sativa L.	Mol. Genet. Genomics	284(2)	137-46	2010	SE1	Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, OsHd1,  Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21
32643	20610409	Momose M,Abe Y,Ozeki Y	Miniature Inverted-repeat Transposable Elements of Stowaway are Active in Potato.	Genetics	186(1)	59-66	2010		
32644	20610705	Zhang D,Liang W,Yin C,Zong J,Gu F,Zhang D	OsC6, encoding a lipid transfer protein, is required for postmeiotic anther development in rice.	Plant Physiol.	154(1)	149-62	2010	_,TDR,LTP2,OSC4,_,C6	YY1, OsLTPc2, OsLtpIII.2, LTP45,tdr, OsbHLH005, bHLH005, OsbHLH5, bhlh5, TDR1, OsTDR, OsTDR1, OsMYC5, MYC5,nsLTP2, OsnsLTP2, OsLTP2.3, Ltp2, OsLTP2, RLTP2, OsLtpII.3,Osc4, OsC4, Osg4B, OsLTPc1, OsLtpIII.1, C4,OsLTP1.18, OsLTP1, nsLTP1, a15, OsLtpI.18, LTPC2, OsLTPC2,Osc6, Osg6B, OsG6B, OsLTPG25, OsLTPg25, OsLtpVII.1, Os C6
32645	20626650	Hurwitz BL,Kudrna D,Yu Y,Sebastian A,Zuccolo A,Jackson SA,Ware D,Wing RA,Stein L	Rice structural variation: a comparative analysis of structural variation between rice and three of its closest relatives in the genus Oryza.	Plant J.	63(6)	990-1003	2010		
32646	20627947	Satoh-Cruz M,Crofts AJ,Takemoto-Kuno Y,Sugino A,Washida H,Crofts N,Okita TW,Ogawa M,Satoh H,Kumamaru T	Protein Disulfide Isomerase Like 1-1 Participates in the Maturation of Proglutelin Within the Endoplasmic Reticulum in Rice Endosperm.	Plant Cell Physiol.	51(9)	1581-1593	2010	PDIL1-1	OsPDIL1;1, PDIL1;1, PDIL 1-1, PDI, OsPDIL1-1, OsTrx28, Trx28
32647	20630103	Hu R,Qi G,Kong Y,Kong D,Gao Q,Zhou G	Comprehensive analysis of NAC domain transcription factor gene family in Populus  trichocarpa.	BMC Plant Biol	10	145	2010		
32648	20632034	Takasaki H,Maruyama K,Kidokoro S,Ito Y,Fujita Y,Shinozaki K,Yamaguchi-Shinozaki K,Nakashima K	The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice.	Mol. Genet. Genomics	284(3)	173-83	2010	LEA3-1,NAC5,ONAC2,NAC6	OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3, OsLEA3A, LEA3A,OsNAC5, NAC71, ONAC071, ONAC009, ONAC9, ONAC020, ONAC20, OnNAC5*, OnNAC5, OsNAC5/ONAC009,SNAC1, snac1, OsNAC9, ONAC002, ONAC2, ONAC033, ONAC33, ONAC043, ONAC43, ONAC044, ONAC44, OsNAC19, NAC19, SNAC1/ONAC002, OsSNAC1, OsNAC9, OsNAC1,OsNAC6, ONAC048, NAC48, SNAC2, SNAC2/OsNAC6, OsNAC6/ONAC048, OsSNAC2, SNAC-2, OsSNAC-2, OsNAC2
32649	20639576	Chen Q,Westfall CS,Hicks LM,Wang S,Jez JM	Kinetic basis for the conjugation of auxin by a GH3 family indole acetic acid-amido synthetase.	J. Biol. Chem.	285(39)	29780-6	2010		
32650	20643810	Guan JC,Yeh CH,Lin YP,Ke YT,Chen MT,You JW,Liu YH,Lu CA,Wu SJ,Lin CY	A 9 bp cis-element in the promoters of class I small heat shock protein genes on  chromosome 3 in rice mediates L-azetidine-2-carboxylic acid and heat shock responses.	J. Exp. Bot.	61(15)	4249-61	2010		
32651	20647377	Du Y,Chu H,Chu IK,Lo C	CYP93G2 is a flavanone 2-hydroxylase required for C-glycosylflavone biosynthesis  in rice.	Plant Physiol.	154(1)	324-33	2010	CYP93G2,_	OsCYP93G2, OsF2H, F2H, OsCYP71S1, CYP71S1,OsCGT, CGT
32652	20650543	Sasayama D,Azuma T,Itoh K	Involvement of cell wall-bound phenolic acids in decrease in cell wall susceptibility to expansins during the cessation of rapid growth in internodes of floating rice.	J. Plant Physiol.	168(2)	121-7	2010		
32653	20652530	Singh N,Dang TT,Vergara GV,Pandey DM,Sanchez D,Neeraja CN,Septiningsih EM,Mendioro M,Tecson-Mendoza EM,Ismail AM,Mackill DJ,Heuer S	Molecular marker survey and expression analyses of the rice submergence-tolerance gene SUB1A.	Theor. Appl. Genet.	121(8)	1441-53	2010		
32654	20663087	Xiong G,Li R,Qian Q,Song X,Liu X,Yu Y,Zeng D,Wan J,Li J,Zhou Y	The rice dynamin-related protein DRP2B mediates membrane trafficking and thereby  plays a critical role in secondary cell wall cellulose biosynthesis.	Plant J.	64(1)	56-70	2010	BC3	bc3, bc-3, OsDRP2B, DRP2B
32655	20663089	Shen X,Yuan B,Liu H,Li X,Xu C,Wang S	Opposite functions of a rice mitogen-activated protein kinase in the process of resistance against Xanthomonas oryzae.	Plant J.	64(1)	86-99	2010	PR1A,CHT1,NH1,PR1B,_,PR10A,MPK6,PAL1,AOS2	OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1, OsPR1b, PR1alpha, OsPR1alpha,Cht1*(Chi1), Ch16, Cht1, CHT-1, CH16, RC24, OsChia1a, OsChia1, Chi1, Cht1*, Chi-1, Cht-1, Cht1, RCC1, OsCht-1, PR3, OsPR3,OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2, DLN5, OsDLN5,  OsBTBA1, BTBA1,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1, OsPR1a, PR1a,Lox2:Os:1, OsLOX9, LOX9, OsLOX8, LOX8, OsLOX2, LOX2, OsRLL, OsHI-LOX, HI-LOX, RLL2 LOX, RLL2, Lox2osPil, OsLOX2;1, LOX2;1, OsLOX1, OsLOX7, LOX7,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsMPK6, OsDR6, DR6, OsMPK4, MPK4, OsMAPK4, MAPK4,OsPAL, Pal1*, Pal1, PAL, Pal_1, PalI, PAL2, OsPAL01, PAL01, OSPAL, CP-1, GP-1, OsPAL1, PAL3, OsPAL3,OsAOS2, CYP74A2, OsAOS, OsAOS1
32656	20663584	Zhang A,Lu Q,Yin Y,Ding S,Wen X,Lu C	Comparative proteomic analysis provides new insights into the regulation of carbon metabolism during leaf senescence of rice grown under field conditions.	J. Plant Physiol.	167(16)	1380-9	2010		
32657	20680611	Qiu Y,Guo J,Jing S,Zhu L,He G	High-resolution mapping of the brown planthopper resistance gene Bph6 in rice and characterizing its resistance in the 9311 and Nipponbare near isogenic backgrounds.	Theor. Appl. Genet.	121(8)	1601-11	2010	BPH6	Bph6, OsBPH6
32658	20685968	Yun MS,Kawagoe Y	Septum Formation in Amyloplasts Produces Compound Granules in the Rice Endosperm  and is Regulated by Plastid Division Proteins.	Plant Cell Physiol.	51(9)	1469-1479	2010		
32659	20693412	Shen C,Wang S,Bai Y,Wu Y,Zhang S,Chen M,Guilfoyle TJ,Wu P,Qi Y	Functional analysis of the structural domain of ARF proteins in rice (Oryza sativa L.).	J. Exp. Bot.	61(14)	3971-81	2010	ARF7A,ARF1,ARF6A,ARF8,ARF17,ARF22,ARF6B,ARF2,ARF7B,MP,ARF16,ARF7,ARF10,ARF16	OsARF7a, OsARF19, ARF19, OsARF7,OsARF1, arf1, OsARF23, ARF23,OsARF6a, OsARF6, ARF6,OsARF8, OsARF12, ARF12,OsARF17,OsARF22,OsARF6b, OsARF25, ARF25,OsARF2, OsARF4, ARF4,OsARF7b, OsARF21, DLN216, OsDLN216,OsMP, OsARF5, OsARF11, DLN125, OsDLN125, OsMP/OsARF11,OsARF16,OsARF7,OsARF10,OsARF16, OsARF2, OsARF1
32660	20695529	Allison JR,Moll GP,van Gunsteren WF	Investigation of stability and disulfide bond shuffling of lipid transfer proteins by molecular dynamics simulation.	Biochemistry	49(32)	6916-27	2010		
32661	20699001	Zheng L,Ying Y,Wang L,Wang F,Whelan J,Shou H	Identification of a novel iron regulated basic helix-loop-helix protein involved  in Fe homeostasis in Oryza sativa.	BMC Plant Biol	10	166	2010	BHLH63	OsIRO3, IRO3, OsbHLH063, bHLH063, bHLH63
32662	20700573	Saito H,Okumoto Y,Yoshitake Y,Inoue H,Yuan Q,Teraishi M,Tsukiyama T,Nishida H,Tanisaka T	Complete loss of photoperiodic response in the rice mutant line X61 is caused by  deficiency of phytochrome chromophore biosynthesis gene.	Theor. Appl. Genet.	122(1)	109-18	2010	SE1,E1,SE13	Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, OsHd1,  Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,E1 (=m Ef1+), mEf1+, Hd4(t), m Ef1-a, m Ef1-b,Se13, OsHY2, OsGUN3, GUN3, PS13
32663	20707904	Takahashi A,Hayashi N,Miyao A,Hirochika H	Unique features of the rice blast resistance Pish locus revealed by large scale retrotransposon-tagging.	BMC Plant Biol	10	175	2010	PIT,PI37,PISH,PI35	Pit, Pit(K59), Pit(Npb), Pi-t, PitNpb, PitK59, Pit1, OsPit1,Pi37(t), Pi37,Pi sh, Pish, Pi-sh, Pish(t),Pi35(t)
32665	20714705	Tan Y,Li S,Xie H,Duan S,Wang T,Zhu Y	Genetical and molecular analysis reveals a cooperating relationship between cytoplasmic male sterility- and fertility restoration-related genes in Oryza species.	Theor. Appl. Genet.	122(1)	9-19	2010		
32666	20716699	Hirano K,Asano K,Tsuji H,Kawamura M,Mori H,Kitano H,Ueguchi-Tanaka M,Matsuoka M	Characterization of the Molecular Mechanism Underlying Gibberellin Perception Complex Formation in Rice.	Plant Cell	22(8)	2680-96	2010		
32667	20720170	Taylor NL,Howell KA,Heazlewood JL,Tan TY,Narsai R,Huang S,Whelan J,Millar AH	Analysis of the rice mitochondrial carrier family reveals anaerobic accumulation  of a basic amino acid carrier involved in arginine metabolism during seed germination.	Plant Physiol.	154(2)	691-704	2010		
32668	20727618	Kato-Noguchi H,Yasuda Y,Sasaki R	Soluble sugar availability of aerobically germinated barley, oat and rice coleoptiles in anoxia.	J. Plant Physiol.	167(18)	1571-6	2010		
32669	20728960	Roychoudhury A,Basu S,Sengupta DN	Amelioration of salinity stress by exogenously applied spermidine or spermine in  three varieties of indica rice differing in their level of salt tolerance.	J. Plant Physiol.	168(4)	317-28	2011		
32670	20729483	Zhou L,Liu Y,Liu Z,Kong D,Duan M,Luo L	Genome-wide identification and analysis of drought-responsive microRNAs in Oryza  sativa.	J. Exp. Bot.	61(15)	4157-68	2010		
32671	20730544	Wally O,Punja ZK	Enhanced disease resistance in transgenic carrot (Daucus carota L.) plants over-expressing a rice cationic peroxidase.	Planta.	232(5)	1229-39	2010		
32672	20732878	Bedon F,Bomal C,Caron S,Levasseur C,Boyle B,Mansfield SD,Schmidt A,Gershenzon J,Grima-Pettenati J,Seguin A,Mackay J	Subgroup 4 R2R3-MYBs in conifer trees: gene family expansion and contribution to  the isoprenoid- and flavonoid-oriented responses.	J. Exp. Bot.	61(14)	3847-64	2010		
32673	20734061	Kim SI,Tai TH	Genetic analysis of two OsLpa1-like genes in Arabidopsis reveals that only one is required for wild-type seed phytic acid levels.	Planta.	232(5)	1241-50	2010		
32674	20737168	Arango J,Wust F,Beyer P,Welsch R	Characterization of phytoene synthases from cassava and their involvement in abiotic stress-mediated responses.	Planta.	232(5)	1251-62	2010		
32675	20737264	Yan CJ,Tian ZX,Fang YW,Yang YC,Li J,Zeng SY,Gu SL,Xu CW,Tang SZ,Gu MH	Genetic analysis of starch paste viscosity parameters in glutinous rice (Oryza sativa L.).	Theor. Appl. Genet.	122(1)	63-76	2011	SBE3,FLO5,AGPL2,SSIIIB,WX1,SSIVA,SSIVB,AGPL3,PUL,SSIIC,SSI,SSIIB,SBE4,SBE1,ISA3,PHS8,GBSSII,ISA2,AGPS1,ALK	SBEIII*, SBEIII, Sbe3, RBE3, QEIIa, QEIIA, BEIIb, BEIIB, SBEIIb, OsBEIIb, sbe3, SBE III, OsSBEIIb, SBEIIb,OsSSIIIa, SSIII-2, OsSSIII-2, OsSS3A, SS3A, SS3a, OsSSSIIIa, SSIIIa, Flo5,OsAGPL2, osagpl2, APL2, OsAPL2, AGPiso, sh2, Sh2, GIF2, GAS1 ,OsSSIIIb. SSIII-1, SSIIIa,wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx,OsSSIVa, SSIV-1, OsSSIV-1,OsSSIVb, SSIV-2, OsSSIV-2, SSIVb, SSIV-2, SSIV2, OsSSIV2,OsAGPL3, APL3, OsAPL3, AGPlar, OsAGPL1, AGPL1,OsPUL, SDBE, OsPUL3, RE,OsSSIIc, SSII-1, SSII1 ,OsSSI, SSS 1, SSS1, SS1, OsSS1, SSSI, OsSSSI,OsSSIIb, OsSSII-2, SSII-2, SS2, OsSSSIIb, SS2b,RBE4, OsSBE4, BEIIa, QEIIb, BEIIA, OsBEIIa,sbe1, Rbe1. Sbe1, sbe1*(QEI), RBE1, BEI, SBE I, QEI, OsBEI, BE1, OsSBE1, OsSBEI, SBEI,OsISA3,ISA1, OsISA1, ISA, OsISA, PHS8/ISA1, OsPHS8, ISA I, OsISA I, ISAI, OsISAI,GBSS2, OsGBSSII, OsGBSS2,OsISA2, ISA II, OsISA II,OsAGPS1, APS1, OsAPS1, AGPsma,alk, SSII-3, OsSSIIa, OsSSII-3, SSIIa, SSS2A, OsSSIIaChr6, SS2a
32676	20796287	Wang N,Wang H,Wang H,Zhang D,Wu Y,Ou X,Liu S,Dong Z,Liu B	Transpositional reactivation of the Dart transposon family in rice lines derived  from introgressive hybridization with Zizania latifolia.	BMC Plant Biol	10	190	2010		
32677	20805329	Abe M,Yoshikawa T,Nosaka M,Sakakibara H,Sato Y,Nagato Y,Itoh JI	WAVY LEAF 1, an Ortholog of Arabidopsis HEN1, Regulates Shoot Development by Maintaining microRNA and trans-acting siRNA Accumulation in Rice.	Plant Physiol.	154(3)	1335-46	2010	SHO2,SHO1,WAF1	sho2,sho1, DCL4, OsDCL4, Os DCL4, Dcl4 ,OsWAF1, waf1, waf1-1, waf1-2, HEN1, OsHEN1
32678	20807214	Hayashi N,Inoue H,Kato T,Funao T,Shirota M,Shimizu T,Kanamori H,Yamane H,Hayano-Saito Y,Matsumoto T,Yano M,Takatsuji H	Durable panicle blast-resistance gene Pb1 encodes an atypical CC-NBS-LRR protein  and was generated by acquiring a promoter through local genome duplication.	Plant J.	64(3)	498-510	2010	PB1	Pb1, Pbst, RMG58.
32679	20822502	Yokoyama R,Uwagaki Y,Sasaki H,Harada T,Hiwatashi Y,Hasebe M,Nishitani K	Biological implications of the occurrence of 32 members of XTH (xyloglucan endotransglucosylase/hydrolase) family of proteins in the bryophyte Physcomitrella patens.	Plant J.	64(4)	645-56	2010		
32680	20822505	Zhang J,Nallamilli BR,Mujahid H,Peng Z	OsMADS6 plays an essential role in endosperm nutrient accumulation and is subject to epigenetic regulation in rice (Oryza sativa).	Plant J.	64(4)	604-17	2010	AGPL1,AGPS1,GH3-8,AGPS2,MFO1,AGPL2	OsAGPL1, OsAPL1, APL1, OsAGPL3, AGPL3, OsAGPSL3, AGPSL3,OsAGPS1, APS1, OsAPS1, AGPsma,OsGH3-8, OsMGH3, OsGH3.8, GH3.8, OsGH3-2,OsAGPS2a, AGPS2A, AGPS2B, OsAGPS2, osagps2, APS2, APS2a, APS2b, AGPS2a, APGS2b, OsAGPS2b, AGPP, GAS8, OsAPS2, OsAPS2a, OsAPS2b,OsMADS6, MADS6, OsMFO1,OsAGPL2, osagpl2, APL2, OsAPL2, AGPiso, sh2, Sh2, GIF2, GAS1 
32681	20823253	Ueno D,Yamaji N,Kono I,Huang CF,Ando T,Yano M,Ma JF	Gene limiting cadmium accumulation in rice.	Proc. Natl. Acad. Sci. U.S.A.	107(38)	16500-5	2010	GCC7	HMA3, OsHMA3, OsHMA3a, OsHMA3n, osHMA3, OsHMP34, HMP34
32682	20830488	Takagi K,Maekawa M,Tsugane K,Iida S	Transposition and target preferences of an active nonautonomous DNA transposon nDart1 and its relatives belonging to the hAT superfamily in rice.	Mol. Genet. Genomics	284(5)	343-55	2010	NDART1-0,ADART,NDART1	nDART1-0,aDart,nDart, nDART1, nDART
32683	20830595	Li W,Wu J,Weng S,Zhang Y,Zhang D,Shi C	Identification and characterization of dwarf 62, a loss-of-function mutation in DLT/OsGRAS-32 affecting gibberellin metabolism in rice.	Planta.	232(6)	1383-96	2010		
32684	20838758	Su Z,Hao C,Wang L,Dong Y,Zhang X	Identification and development of a functional marker of TaGW2 associated with grain weight in bread wheat (Triticum aestivum L.).	Theor. Appl. Genet.	122(1)	211-23	2010		
32685	20603282	Hirose T., Zhang Z., Miyao A., Hirochika H., Ohsugi R., Terao T.	Disruption of a gene for rice sucrose transporter, OsSUT1, impairs pollen function but pollen maturation is unaffected.	Journal of Experimental Botany	61(13)	3639-3646	2010	SUT1,SUT3	OsSUT1, OsSUT2,OsSUT3(t), OsSUT3, SUC3, OsSUT2
32686	20498338	Zhao X.Q., Mitani N., Yamaji N., Shen R.F., Ma J.F.	Involvement of silicon influx transporter OsNIP2;1 in selenite uptake in rice.	Plant Physiol.	153(4)	1871-1877	2010	LSI1	lsi1, NIP2-1, OsNIP2;1, NIP2;1, OsLsi1, lsi(t), OsNIP2.1/OsLsi1/OsSIIT1, OsNIP2.1, NIP2.1
32687	20566706	Wei X., Xu J., Guo H., Jiang L., Chen S., Yu C., Zhou Z., Hu P., Zhai H., Wan J.	DTH8 suppresses flowering in rice, influencing plant height and yield potential simultaneously.	Plant Physiol.	153(4)	1747-1758	2010	HD5,HD3A,EF1	Hd5(t)*, Hd5, qHD5, HAP3H, OsHAP3H, NF-YB, CBF-A, DTH8 , qHD5(t)*, Ghd8, Ghd8/DTH8, Lhd1, NF-YB11, OsNF-YB11, NFYB11, LH8, DTH8/Ghd8, RH8, DTH8/Ghd8/LHD1, CAR8, DTH8/Ghd8/ OsHAP3H, EF8, OsEF8,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 
32688	20487382	Ammiraju J.S.S., Fan C., Yu Y., Song X., Cranston K.A., Pontaroli A.C., Lu F., Sanyal A., Jiang N., Rambo T., Currie J., Collura K., Talag J., Bennetzen J.L., Chen M., Jackson S., Wing R.A.	Spatio-temporal patterns of genome evolution in allotetraploid species of the genus Oryza.	Plant Journal	63(3)	430-442	2010	ADH1	Adh1, Adh1/2, adh1/adh2, OsADH1
32689	20498340	Huang C.-F., Yamaji N., Ma J.F.	Knockout of a bacterial-type ATP-binding cassette transporter gene, AtSTAR1, results in increased aluminum sensitivity in Arabidopsis.	Plant Physiol.	153(4)	1669-1677	2010		
32690	20581256	Schnurbusch T., Hayes J., Hrmova M., Baumann U., Ramesh S.A., Tyerman S.D., Langridge P., Sutton T.	Boron toxicity tolerance in barley through reduced expression of the multifunctional aquaporin HvNIP2;1.	Plant Physiol.	153(4)	1706-1715	2010		
32692	20525005	Kishi-Kaboshi M., Okada K., Kurimoto L., Murakami S., Umezawa T., Shibuya N., Yamane H., Miyao A., Takatsuji H., Takahashi A., Hirochika H.	A rice fungal MAMP-responsive MAPK cascade regulates metabolic flow to antimicrobial metabolite synthesis.	Plant Journal	63(4)	599-612	2010	MPK6,MSRMK2,DSG1,MKK5,BZIP37,SMG1	OsMPK6, OsDR6, DR6, OsMPK4, MPK4, OsMAPK4, MAPK4,OsMSRMK2, OsMAPK5, OsMAP1, OsMPK3, OsBIMK1, OsMAPK2, MPK5, BIMK1, MAPK2, MAPK5, MPK3, OsMPK5, OsMAPK3, OsMAPK5b, MAPK3,OsMAPK6, MAPK6, OsMPK6, OsSIPK, SIPK, OsMAPK1, MAPK1, MPK1, OsMPK1, MPK6, OsDSG1,OsMKK5, BUD1, OsBUD1,OsTGAP1, TGAP1, OsbZIP37,OsMKK4, MKK4, OsMKK4/SMG1, OsMAPKK4, MAPKK4, OsMEK4, MEK4, OsSMG1, SMG1/OsMEK6, OsMEK6, MEK6, OsSTS, STS
32693	20487381	Yan H., Kikuchi S., Neumann P., Zhang W., Wu Y., Chen F., Jiang J.	Genome-wide mapping of cytosine methylation revealed dynamic DNA methylation patterns associated with genes and centromeres in rice.	Plant Journal	63(3)	353-365	2010		
32694	20460361	Sun S.-J., Guo S.-Q., Yang X., Bao Y.-M., Tang H.-J., Sun H., Huang J., Zhang H.-S.	Functional analysis of a novel Cys2/His2-type zinc finger protein involved in salt tolerance in rice.	Journal of Experimental Botany	61(10)	2807-2818	2010	LEA3-1,PROT,P5CS,ZFP179,DREB2A	OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3, OsLEA3A, LEA3A,OsProT, ProT, OsProT2, ProT2,OsP5CS, P5CS1, OsP5CS1, OsALDH18B1, ALDH18B1, OsP5CS-1, P5CS-1,OsZFP179, DLN27, OsDLN27,OsDREB2A, OsDREB2a, ERF40, OsERF#040, OsERF040, OsERF40, AP2/EREBP#167, AP2/EREBP167
32695	20607362	Huang C.-K., Yu S.-M., Lu C.-A.	A rice DEAD-box protein, OsRH36, can complement an Arabidopsis atrh36 mutant, but cannot functionally replace its yeast homolog Dbp8p.	Plant Mol. Biol.	74(1)	119-128	2010	_	OsRH36
32696	20443024	Wu C., Fu Y., Hu G., Si H., Cheng S., Liu W.	Isolation and characterization of a rice mutant with narrow and rolled leaves.	Planta.	232(2)	313-324	2010		
32697	20439547	Liu L., Zhou Y., Szczerba M.W., Li X., Lin Y.	Identification and application of a rice senescence-associated promoter.	Plant Physiol.	153(3)	1239-1249	2010		
32699	20443025	Abiko T., Wakayama M., Kawakami A., Obara M., Kisaka H., Miwa T., Aoki N., Ohsugi R.	Changes in nitrogen assimilation, metabolism, and growth in transgenic rice plants expressing a fungal NADP(H)-dependent glutamate dehydrogenase (gdhA).	Planta.	232(2)	299-311	2010		
32700		Li M.-M., Xu L., Ren J.-F., Cao G.-L., Yu L.-Q., He H.-H., Han L.-Z., Koh H.-J.	Identification of quantitative trait loci for grain traits in japonica rice.	Agricultural Sciences in China	9(7)	929-936	2010		
32701	20409004	Lee Y.-S., Jeong D.-H., Lee D.-Y., Yi J., Ryu C.-H., Kim S.L., Jeong H.J., Choi S.C., Jin P., Yang J., Cho L.-H., Choi H., An G.	OsCOL4 is a constitutive flowering repressor upstream of Ehd1 and downstream of OsphyB.	Plant Journal	63(1)	18-30	2010	EF1,COL4,PHYB	Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,OsCOL4, OsD, OsBBX5, OsCOL4/OsD, OsCCT06, BBX5, CCT06,phyB, PHYB1, OsPHYB, OsphyB, OsYHB, YHB, OsPHYB/OsYHB
32702	20574667	Zhang Z., Li F., Li D., Zhang H., Huang R.	Expression of ethylene response factor JERF1 in rice improves tolerance to drought.	Planta.	232(3)	765-774	2010		
32703	20567981	Yi N., Kim Y.S., Jeong M.-H., Oh S.-J., Jeong J.S., Park S.-H., Jung H., Choi Y.D., Kim J.-K.	Functional analysis of six drought-inducible promoters in transgenic rice plants throughout all stages of plant growth.	Planta.	232(3)	743-754	2010		
32704		Abbasi F.M., Shah A.H., Masood R., Mujadad R., Nawaz F., Sajid M., Afzal M., Majid A., Akhtar N., Bukhari I.	Production and molecular characterization of wide cross derivatives in rice.	African Journal of Biotechnology	9(25)	3732-3735	2010		
32705	20549230	Ilg A., Yu Q., Schaub P., Beyer P., Al-Babili S.	Overexpression of the rice carotenoid cleavage dioxygenase 1 gene in Golden Rice endosperm suggests apocarotenoids as substrates in planta.	Planta.	232(3)	691-699	2010		
32706		Kumar A., Kumar S., Kumar R., Kumar V., Prasad L., Kumar N., Singh D.	Identification of blast resistance expression in rice genotypes using molecular markers (RAPD & SCAR).	African Journal of Biotechnology	9(24)	3501-3509	2010		
32707		Naveed S.A., Babar M., Arif A., Zafar Y., Sabar M., Ali I., Chragh M., Arif M.	Detection of bacterial blight resistant gene xa5 using linked marker approaches.	African Journal of Biotechnology	9(24)	3549-3554	2010		
32708		Wu J.-R., Fan F.-J., Du J.-H., Fan Y.-Y., Zhuang J.-Y.	Dissection of QTLs for Hull Silicon Content on the Short Arm of Rice Chromosome 6.	Rice Science	17(2)	99-104	2010		
32709		Wang Z.-F., Wang J.-F., Bao Y.-M., Wu Y.-Y., Su X., Zhang H.-S.	Inheritance of Rice Seed Germination Ability under Salt Stress.	Rice Science	17(2)	105-110	2010		
32710		Huang X., Jin Z.-X., Li X.-G., Liu H.-L., Xu M.-L., Zhang F.-Z., Zhang Z.-C.	Effects of Grain Protein Content Selection on Protein Content and Key Enzyme Activity Involved in Nitrogen Metabolism in Progenies Derived from a Rice Cross.	Rice Science	17(2)	156-160	2010		
32711		Wang H.-Z., Zhang L.-H., Ma J., Li X.-Y., Li Y., Zhang R.-P., Wang R.-Q.	Effects of Water Stress on Reactive Oxygen Species Generation and Protection System in Rice During Grain-Filling Stage.	Agricultural Sciences in China	9(5)	633-641	2010		
32712		MA H.-l., ZHOU H.-l., ZHANG H.-y., ZHAO J.	Cloning and Expression Analysis of an AP2/ERF Gene and Its Responses to Phytohormones and Abiotic Stresses in Rice.	Rice Science	17(1)	1-9	2010		
32713		XIA Z.-h., HAN F., GAO L.-f., YUAN Q.-h., ZHAI W.-x., LIU D., LUO Y.-h.	Application of Functional Markers to Identify Genes for Bacterial Blight Resistance in Oryza rufipogon.	Rice Science	17(1)	73-76	2010		
32714		CHEN D.-x., CHEN X.-w., MA B.-t., WANG Y.-p., ZHU L.-h., LI S.-g.	Genetic Transformation of Rice with Pi-d2 Gene Enhances Resistance to Rice Blast Fungus Magnaporthe oryzae.	Rice Science	17(1)	19-27	2010	PID2	Pi-d2, Pi-d(t)2, PiD2(t), Pid2, PI-D2, Pi-d2(t), SDRLK-PID2, OsSDRLK-PID2
32715		SONG Y., AI C.-r., JING S.-j., YU D.-q.	Research Progress on Functional Analysis of Rice WRKY Genes.	Rice Science	17(1)	60-72	2010		
32716		MA B.-j., GU Z.-m., TANG H.-j., CHEN X.-f., LIU F., ZHANG H.-s.	Preliminary Study on Function of Calcineurin B-Like Protein Gene OsCBL8 in Rice.	Rice Science	17(1)	10-18	2010		
32717		GUO Y., CHENG B.-s., HONG D.-l.	Construction of SSR Linkage Map and Analysis of QTLs for Rolled Leaf in Japonica Rice.	Rice Science	17(1)	28-34	2010		
32718		Himabindu K., Suneetha K., Sama V.S.A.K., Bentur J.S.	A new rice gall midge resistance gene in the breeding line CR57-MR1523, mapping with flanking markers and development of NILs.	Euphytica	174(2)	179-187	2010		
32719	20363869	Park SH, Yi N, Kim YS, Jeong MH, Bang SW, Choi YD, Kim JK.	Analysis of five novel putative constitutive gene promoters in transgenic rice plants.	J. Exp. Bot.	61(9)	2459-67.	2010	APX2	OsAPX2, OsAPx02, APXb, OsAPx2, OSAPX2, APx2, cAPX, OsAPX1, APX1
32720	19061530	Cheema KK, NK Grewal, Y Vikal, A Das, R Sharma, JS Lore, D Bhatia, R Mahajan, V Gupta and Kuldeep Singh	A novel bacterial blight resistance gene from Oryza nivara mapped to 38 Kbp region on chromosome 4L and transferred to O. sativa L.	Genetics Research	90	397-407	2008	XA38	Xa38
32721	21410466	Masayuki Murai, Hironori Nagano, Kazumitsu Onishi, Atsushi Ogino, Naofumi Ichikawa, Hari Bahadur Kc and Yoshio Sano	Differentiation in wild-type allele of the sd1 locus concerning culm length between indica and japonica subspecies of Oryza sativa (rice)	Hereditas	148(1)	1-7	2011	SD1	sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2, OsPHQ1, OsPHq1, PHq1
32722	21212298	Yusaku Uga; Kazutoshi Okuno; Masahiro Yano	Dro1, a major QTL involved in deep rooting of rice under upland field conditions	Journal of Experimental Botany			2011	DRO1	Dro1, OsDRO1, OsSPR1, SPR1, DRO1/OsNGR3, OsNGR3, NGR3
32723		Yusaku Uga; Kazutoshi Okuno; Masahiro Yano	Fine mapping of Sta1, a quantitative trait locus determining stele transversal area, on rice chromosome 9	Molecular Breeding	26(3)	533-538	2010	STA1	Sta1
32724		Shukun Jiang, Xijuan Zhang, Jiayu Wang, Wenfu Chen, Zhengjin Xu	Fine mapping of the quantitative trait locus qFLL9 controlling flag leaf length in rice	Euphytica	176	341-347	2010	qFLL9	qFLL9
32726		Asanori Yara, Cong Nguyen Phi, Masaya Matsumura, Atsushi Yoshimura and Hideshi Yasui	Development of near-isogenic lines for BPH25(t) and BPH26(t), which confer resistance to the brown planthopper, Nilaparvata lugens (St?l.) in indica riceeADR52f	Breeding Science	60	639-647	2010	BPH9,BPH25	Bph9, BPH9/26, Bph26(t), BPH26, Bph18(t), BPH18,Bph25(t)
32727	15659435	Itoh J, Nonomura K, Ikeda K, Yamaki S, Inukai Y, Yamagishi H, Kitano H, Nagato Y.	Rice plant development: from zygote to spikelet.	Plant Cell Physiol.	46(1)	23-47.	2005		
32728	20198467	Thiemele, D., Boisnard, A., Ndjiondjop, M.-N., Cheron, S., Sere, Y., Ake, S., Ghesquiere, A., Albar, L.	Identification of a second major resistance gene to Rice yellow mottle virus, RYMV2, in the African cultivated rice species, O. glaberrima	Theor. Appl. Genet.	121 (1)	169-179	2010	RYMV2	OsCPR5-1, CPR5-1, OsRYMV2, OsCPR5.1, CPR5.1
32729	20495564	Miura K, Ikeda M, Matsubara A, Song XJ, Ito M, Asano K, Matsuoka M, Kitano H, Ashikari M.	OsSPL14 promotes panicle branching and higher grain productivity in rice 	Nat Genet	42(6)	545-9	2010	WFP	OsSPL14, SPL14, IPA1, WFP/IPA1, OsSPL14/WFP/IPA1, OsIPA1,  IPA1/OsSPL14
32730		Yuka Kitomi, Atsushi Ogawa, Hidemi Kitano and Yoshiaki Inukai	CRL4 regulates crown root formation through auxin transport in rice	Plant Root		19-28	2008	CRL4,_	OsGNOM1, GNOM1, CRL4/GNOM1, CRL2/CRL3,
32731		Y. KITOMI, H. KITANO and Y. INUKAI	Mapping of the CROWN ROOTLESS3 gene, CRL3, in rice	RGN	24	31-33	2008	CRL3	crl3
32732		Y. Yamamoto, Y. Inukai, H. Kitano, T. Sazuka and M. Matsuoka	Characterization and mapping of the CROWN ROOTLESS2 gene, CRL2, in rice	RGN	25	25-26	2010	CRL2	crl2*, crl2
32733	18997409	Vu NT, Shimada H, Kakuta Y, Nakashima T, Ida H, Omori T, Nishi A, Satoh H, Kimura M.	Biochemical and Crystallographic Characterization of the Starch Branching Enzyme I (BEI) from Oryza sativa L.	Biosci. Biotechnol. Biochem.	72(11)	2858-2866	2008	SBE1	sbe1, Rbe1. Sbe1, sbe1*(QEI), RBE1, BEI, SBE I, QEI, OsBEI, BE1, OsSBE1, OsSBEI, SBEI
32734	20570652	Kato Y,Konishi M,Shigyo M,Yoneyama T,Yanagisawa S	Characterization of plant eukaryotic translation initiation factor 6 (eIF6) genes: The essential role in embryogenesis and their differential expression in Arabidopsis and rice.	Biochem. Biophys. Res. Commun.	397(4)	673-8	2010	EIF6;2	Os-eIF6;2, eIF6;2, OseIF6.2, eIF6.2
32735	20576097	Peng X,Wang K,Hu C,Zhu Y,Wang T,Yang J,Tong J,Li S,Zhu Y	The mitochondrial gene orfH79 plays a critical role in impairing both male gametophyte development and root growth in CMS-Honglian rice.	BMC Plant Biol	10	125	2010	_	orfH79, ORFH79
32736	20626916	Li Q,Li L,Yang X,Warburton ML,Bai G,Dai J,Li J,Yan J	Relationship, evolutionary fate and function of two maize co-orthologs of rice GW2 associated with kernel size and weight.	BMC Plant Biol	10	143	2010	GW2	OsGW2, OsRING429, RING429, GNL44, OsGNL44
32737	20631318	Cao FQ,Werner AK,Dahncke K,Romeis T,Liu LH,Witte CP	Identification and characterization of proteins involved in rice urea and arginine catabolism.	Plant Physiol.	154(1)	98-108	2010	NGLF,_,_,_,_	OsARG, ARG, Nglf, Nglf-1, OsAGM, AGM,,UreD, OsUreD,UreF, OsUreF,UreG, OsUreG
32738	20639575	Nakagawa M,Ueyama M,Tsuruta H,Uno T,Kanamaru K,Mikami B,Yamagata H	Functional analysis of the cucumisin propeptide as a potent inhibitor of its mature enzyme.	J. Biol. Chem.	285(39j	29797-807	2010		
32739	20652591	Byers E,Rueger J,Bonen L	Impact of genomic environment on mitochondrial rps7 mRNA features in grasses.	Mol. Genet. Genomics	284(3)	207-16	2010		
32740	20653414	Hebrard E,Poulicard N,Gerard C,Traore O,Albar L,Fargette D,Bessin Y,Vignols F	Direct interaction between the Rice yellow mottle virus VPg and the central domain of the rice eIF(iso)4G1 factor correlates with rice susceptibility and RYMV virulence.	Mol. Plant Microbe Interact.	23i11j	1506-13	2010		
32741	20719766	Yokota K,Soyano T,Kouchi H,Hayashi M	Function of GRAS Proteins in Root Nodule Symbiosis is Retained in Homologs of a Non-Legume, Rice.	Plant Cell Physiol.	51(9)	1436-1442	2010	NSP2,NSP1	Os NSP2, OsNSP2, OsGRAS-13, OsGRAS13, GRAS-13, GRAS13, OsGRAS12, GRAS12,Os NSP1, OsNSP1, OsGRAS-14, OsGRAS14, GRAS-14, GRAS14
32742	20739304	Matsui H,Yamazaki M,Kishi-Kaboshi M,Takahashi A,Hirochika H	AGC Kinase OsOxi1 Positively Regulates Basal Resistance through Suppression of OsPti1a-Mediated Negative Regulation.	Plant Cell Physiol.	51(10)	1731-1744	2010	OXI1,RLCK33,RLCK178	OsOxi1, OsAGC10, AGC10,OsPti1b, Pti1b, OsRLCK33,OsPti1a, Pti1a, OsRLCK178
32743	20825165	Kuntothom T,Raab M,Tvaroska I,Fort S,Penthaisong S,Canada FJ,Calle L,Jimenez-Barbero J,Ketudat Cairns JR,Hrmova M	Binding of beta-D-glucosides and beta-D-mannosides by rice and barley beta-D-glycosidases with distinct substrate specificities.	Biochemistry	49(40)	8779-8793	2010		
32744	20478969	Chen J., Wang P., Mi H.-L., Chen G.-Y., Xu D.-Q.	Reversible association of ribulose-1, 5-bisphosphate carboxylase/oxygenase activase with the thylakoid membrane depends upon the ATP level and pH in rice without heat stress	J. Exp. Bot.	61(11)	2939-2950	2010		
32745	20566563	Frey N., Klotz J., Nick P.	A kinesin with calponin-homology domain is involved in premitotic nuclear migration	J. Exp. Bot.	61(12)	3423-3437	2010		
32746	20444225	Zhang M., Zhang B., Qian Q., Yu Y., Li R., Zhang J., Liu X., Zeng D., Li J., Zhou Y.	Brittle Culm 12, a dual-targeting kinesin-4 protein, controls cell-cycle progression and wall properties in rice	Plant J.	63(2)	312-328	2010	BC12	bc12, gdd, GDD1, BC12/GDD1, OsGDD1, OsBC12/GDD1, OsBC12, LGW, OsLGW
32747	20593223	Park J.-J., Jin P., Yoon J., Yang J.-I., Jeong H.J., Ranathunge K., Schreiber L., Franke R., Lee I.-J., An G.	Mutation in Wilted Dwarf and Lethal 1 (WDL1) causes abnormal cuticle formation and rapid water loss in rice	Plant Mol. Biol.	74(1)	91-103	2010	GELP112	OsGELP112, WDL1
32748	20600702	Nuruzzaman M., Manimekalai R., Sharoni A.M., Satoh K., Kondoh H., Ooka H., Kikuchi S.	Genome-wide analysis of NAC transcription factor family in rice.	Gene	465(1-2)	30-44	2010		
32749		Ouyang J., Cai Z., Xia K., Wang Y., Duan J., Zhang M.	Identification and analysis of eight peptide transporter homologs in rice.	Plant Sci.	179(4)	374-382	2010	PTR7,PTR8,RBLS5,PTR1,PTR2,PTR6,PTR5,PTR4	OsPTR7, OsNPF8.1, NPF8.1, OsNPF8.10, NPF8.10,OsPTR8, OsNPF8.5, NPF8.5 ,PTR3, OsPTR3, PTR3-A, OsPTR3-A, OsNPF5.5, NPF5.5, OsRBLS5,OsPTR1, OsNPF8.2, NPF8.2 ,OsPTR2, OsNPF2.2, NPF2.2,OsPTR6, OsNRT1;2, NRT1;2, OsNPF7.3, NPF7.3 ,OsPTR5, OsNPF7.4, NPF7.4 ,OsPTR4, OsNPF7.1, NPF7.1 
32750		Tang P., Zhang Y., Sun X., Tian D., Yang S., Ding J.	Disease resistance signature of the leucine-rich repeat receptor-like kinase genes in four plant species.	Plant Sci.	179(4)	399-406	2010		
32751		Opassiri R., Maneesan J., Akiyama T., Pomthong B., Jin S., Kimura A., Cairns J.R.K.	Rice Os4BGlu12 is a wound-induced ??-glucosidase that hydrolyzes cell wall-??-glucan-derived oligosaccharides and glycosides.	Plant Sci.	179(3)	273-280	2010		
32752	20581303	Je B.I., Piao H.L., Park S.J., Park S.H., Kim C.M., Xuan Y.H., Park S.H., Huang J., Do Choi Y., An G., Wong H.L., Fujioka S., Kim M.-C., Shimamoto K., Han C.-D.	RAV-Like1 maintains brassinosteroid homeostasis via the coordinated activation of BRI1 and biosynthetic genes in rice.	Plant Cell	22(6)	1777-1791	2010	D61,RAVL1,D11,D2,BRD1,BZR1	d61*, dwf42, d61, OsBRI1, OSBRI1, BRI1, Os BRI1, Osbri1, OsBRKq1, BRKq1,RAVL, OsRAVL1, OsNGA3, NGA3,d11(d8), dwf10, d8, D11/CYP724B1, d11, CYP724B1, GNS4, OsD11, PMM1, OsPMM1, PMM1/D11, NBG4, OsCPB1, CPB1, CPB1/D11,d2, dwf2, CYP90D2, D2/CYP90D2, OsD2, SMG11, OsSMG11, D2/SMG11, OsD2a, OsD2b,brd1, OsDWARF, DWARF, OsBR6ox, BR6ox, CYP85A1, CYP85A4, OsDWF, CYP85A1/OsDWARF, OsBRD1, OsCYP85A1,OsBZR1, Os BZR1, OsBES1-6, BES1-6
32753	20852032	Du H,Wang N,Cui F,Li X,Xiao J,Xiong L	Characterization of the beta-carotene hydroxylase gene DSM2 conferring drought and oxidative stress resistance by increasing xanthophylls and abscisic acid synthesis in rice.	Plant Physiol.	154(3)	1304-18	2010	HYD2,_,DSM2	OsBCH3, BCH3, OsHYD2, OsBCH2, BCH2,OsBCH2, BCH2, OsHYD1, HYD1,OsDSM2, OsBCH1, BCH1, OsHYD3, HYD3
32754	20862512	Takayanagi S,Takagi Y,Araki R,Hasegawa H	High-affinity nitrate uptake by rice (Oryza sativa) coleoptiles.	J. Plant Res.	124	305-9	2011	NAR2.1,NAR2.2,HTNE,NRT2.1,NRT2.4,NRT2.2	OsNAR2.1, OsNRT3.1A,OsNAR2.2, OsNRT3.1B,NRT2.3, OsNRT2.3, OsNRT2;1, OsNRT2.3a, OsNRT2.3b, OsNRT2;3a, OsNRT2.5 ,OsNRT2.1, OsNRT2.2,OsNRT2.4,OsNRT2.2, OsNRT2.1
32755	20872132	Liu Y,Zhu XY,Zhang S,Bernardo M,Edwards J,Galbraith DW,Leach J,Zhang G,Liu B,Leung H	Dissecting quantitative resistance against blast disease using heterogeneous inbred family lines in rice.	Theor. Appl. Genet.	122(2)	341-53	2011		
32756	20872210	Mao D,Yu H,Liu T,Yang G,Xing Y	Two complementary recessive genes in duplicated segments control etiolation in rice.	Theor. Appl. Genet.	122(2)	373-83	2011		
32757	20878142	Win KT,Yamagata Y,Miyazaki Y,Doi K,Yasui H,Yoshimura A	Independent evolution of a new allele of F1 pollen sterility gene S27 encoding mitochondrial ribosomal protein L27 in Oryza nivara.	Theor. Appl. Genet.	122(2)	385-94	2011	S27,RPL27-1,RPL27-2	S27(t), S27(t)*,rpl27-1, rpl27, mtRPL27b, S27, S27(t), S27(t)*,rpl27-2, rpl27, mtRPL27a, S27, S27(t), S27(t)*
32758	20938764	Xu J,Wang B,Wu Y,Du P,Wang J,Wang M,Yi C,Gu M,Liang G	Fine mapping and candidate gene analysis of ptgms2-1, the photoperiod-thermo-sensitive genic male sterile gene in rice (Oryza sativa L.).	Theor. Appl. Genet.	122(2)	365-72	2011		
32759	20940062	Bisht NK,Abbruzzetti S,Uppal S,Bruno S,Spyrakis F,Mozzarelli A,Viappiani C,Kundu S	Ligand migration and hexacoordination in type 1 non-symbiotic rice hemoglobin.	Biochim. Biophys. Acta			2011		
32760	20974950	Mao H,Sun S,Yao J,Wang C,Yu S,Xu C,Li X,Zhang Q	Linking differential domain functions of the GS3 protein to natural variation of  grain size in rice.	Proc. Natl. Acad. Sci. U.S.A.	107(45)	19579-84	2010	LK3	lk3(t), lk3(t)*, SG3, GS3, SG3-GS3, OsGW3, OsGS3, RGG3/GS3/Mi/OsGGC1, RGG3, Mi, OsGGC1, GGC1, OsSYL3, SYL3, TT2, OsTT2
32761	21041675	Morita H,Wanibuchi K,Nii H,Kato R,Sugio S,Abe I	Structural basis for the one-pot formation of the diarylheptanoid scaffold by curcuminoid synthase from Oryza sativa.	Proc. Natl. Acad. Sci. U.S.A.	107(46)	19778-83	2010		
32762	21046066	Juwattanasomran R,Somta P,Chankaew S,Shimizu T,Wongpornchai S,Kaga A,Srinives P	A SNP in GmBADH2 gene associates with fragrance in vegetable soybean variety "Kaori" and SNAP marker development for the fragrance.	Theor. Appl. Genet.	122(3)	533-41	2011		
32764	21107518	Wang C,Chen S,Yu S	Functional markers developed from multiple loci in GS3 for fine marker-assisted selection of grain length in rice.	Theor. Appl. Genet.	122(5)	905-13	2011		
32765	21132425	Babu R,Jiang CJ,Xu X,Kottapalli KR,Takatsuji H,Miyao A,Hirochika H,Kawasaki S	Isolation, fine mapping and expression profiling of a lesion mimic genotype, spl  ( NF4050-8 ) that confers blast resistance in rice.	Theor. Appl. Genet.	122(4)	831-54	2011		
32766	21140255	Wu X,Zuo S,Chen Z,Zhang Y,Zhu J,Ma N,Tang J,Chu C,Pan X	Fine mapping of qSTV11 ( TQ ), a major gene conferring resistance to rice stripe  disease.	Theor. Appl. Genet.	122(5)	915-23	2011		
32767	21153625	Yuan B,Zhai C,Wang W,Zeng X,Xu X,Hu H,Lin F,Wang L,Pan Q	The Pik-p resistance to Magnaporthe oryzae in rice is mediated by a pair of closely linked CC-NBS-LRR genes.	Theor. Appl. Genet.	122(5)	1017-28	2010	PIK,PIKP	Pik, RMg8, Pi-k, Pik-2, Pik-1, Pik1, Pik2, Pik-H4, Pikp-1, Pikh-1, Pik1-H4, Pikh-2, Pik2-H4,Pik-p, Pi-kp, Pikp, Pikp-1, Pikp-2
32768	21156329	Rae AL,Casu RE,Perroux JM,Jackson MA,Grof CP	A soluble acid invertase is directed to the vacuole by a signal anchor mechanism.	J. Plant Physiol.	168(9)	983-9	2010		
32769	21156806	Nozoye T,Nagasaka S,Kobayashi T,Takahashi M,Sato Y,Sato Y,Uozumi N,Nakanishi H,Nishizawa NK	Phytosiderophore efflux transporters are crucial for iron acquisition in graminaceous plants.	J. Biol. Chem.	286(7)	5446-54	2011	NAAT2,YSL1,YSL10,NAAT3,ENA1,ZIFL5,NAAT4,NAAT5,YSL3,DMAS1,TOM1,NAAT1,YSL2,YSL6,YSL5,YSL4	OsNAAT2,OsYSL1, OsYs1,OsYSL10,OsNAAT3,OsENA1,OsZIFL5, OsTOM2, TOM2,OsNAAT4, OsNAAT1 ,OsNAAT5,OsYSL3, OsYs16 ,OsDMAS1, OsAKR5, AKR5,OsTOM1, ZIFL4, OsZIFL4 ,OsNAAT1,OsYSL2, Os-YSL2, OsYs6 ,OsYSL6, OsYs8 ,OsYSL5, OsYs9 ,OsYSL4, OsYs17 
32770	21161500	Shao Y,Jin L,Zhang G,Lu Y,Shen Y,Bao J	Association mapping of grain color, phenolic content, flavonoid content and antioxidant capacity in dehulled rice.	Theor. Appl. Genet.	122(5)	1005-16	2011		
32771	21169347	Sharoni AM,Nuruzzaman M,Satoh K,Shimizu T,Kondoh H,Sasaya T,Choi IR,Omura T,Kikuchi S	Gene Structures, Classification and Expression Models of the AP2/EREBP Transcription Factor Family in Rice.	Plant Cell Physiol.	52(2)	344-60	2011		
32772	21172955	Du H,Liang Y,Pei K,Ma K	UV Radiation-Responsive Proteins in Rice Leaves: A Proteomic Analysis.	Plant Cell Physiol.	52(2)	306-16	2011	TSA	OsTSA, pOsTSA, TSbeta, TSA1, OsTSA1
32773	21205035	Kang K,Park S,Natsagdorj U,Kim YS,Back K	Methanol is an endogenous elicitor molecule for the synthesis of tryptophan and tryptophan-derived secondary metabolites upon senescence of detached rice leaves.	Plant J.	66(2)	247-57	2011		
32774	21205822	Im CH,Hwang SM,Son YS,Heo JB,Bang WY,Swasticka IN,Shiina T,Bahk JD	Nuclear/nucleolar GTPase 2 proteins as a subfamily of YlqF/YawG GTPases function  in pre-60S ribosomal subunit maturation of mono- and di-cotyledonous plants.	J. Biol. Chem.	286(10)	8620-32	2011	_,_,_,_,EBP-89	OsNug2,OsRPL10Ac1, OsL10a,,OsSTK1,OsEBP-89, ebp-89, OsERF#060, OsERF060, OsERF60, ERF60, AP2/EREBP#027, AP2/EREBP27, OsEBP89, DLN76, OsDLN76
32775	21209101	Yu Q,Ghisla S,Hirschberg J,Mann V,Beyer P	Plant carotene cis-trans isomerase CRTISO: a new member of the FADred-dependent flavoproteins catalyzing non-redox reactions.	J. Biol. Chem.	286(10)	8666-76	2011		
32776	21216027	Chou TS,Chao YY,Huang WD,Hong CY,Kao CH	Effect of magnesium deficiency on antioxidant status and cadmium toxicity in rice seedlings.	J. Plant Physiol.	168(10)	1021-30	2011	ZIP3,IRT1	OsZIP3,OsIRT1, ZIP10, OsZIP10, OsZIP12, ZIP12
32777	21219509	Sabot F,Picault N,Elbaidouri M,Llauro C,Chaparro C,Piegu B,Roulin A,Guiderdoni E,Delabastide M,McCombie R,Panaud O	Transpositional landscape of rice genome revealed by Paired-End Mapping of high-throughput resequencing data.	Plant J.	66(2)	241-6	2011		
32778	21220310	Jiang N,Ferguson AA,Slotkin RK,Lisch D	Pack-Mutator-like transposable elements (Pack-MULEs) induce directional modification of genes through biased insertion and DNA acquisition.	Proc. Natl. Acad. Sci. U.S.A.	108(4)	1537-42	2011		
32779	21220762	Dionisio G,Madsen CK,Holm PB,Welinder KG,Jorgensen M,Stoger E,Arcalis E,Brinch-Pedersen H	Cloning and Characterization of Purple Acid Phosphatase Phytases from Wheat (Triticum aestivum L.), Barley (Hordeum vulgare L.), Maize (Zea maize L.) and Rice (Oryza sativa L.).	Plant Physiol.	156(3)	1087-1100	2011	PAP15	OsPAP15, OsPAPhy_b, PAPhy_b, OsPHY1
32780	21223397	Wakasa Y,Yasuda H,Oono Y,Kawakatsu T,Hirose S,Takahashi H,Hayashi S,Yang L,Takaiwa F	Expression of ER quality control-related genes in response to changes in BiP1 levels in developing rice endosperm.	Plant J.	65(5)	675-89	2010	PDIL1-1,O3,PDIL1-4,PDIL2-3,FES1C,GLUD1,BIP5,HSR203J,BIP3,BIP2,_,_,GLUA1,ERDJ3B,GLUB1A,CRT2,GLU7,CNX,BIP1,GLUA2,GLUB1,GLB1,GLUB4,GLUC	OsPDIL1;1, PDIL1;1, PDIL 1-1, PDI, OsPDIL1-1, OsTrx28, Trx28,OsbZIP60, bZIP60,PDIL1;4, PDIL 1-4, OsPDIL1-4, OsTrx05, Trx05, OsTrx5, Trx5,PDIL2;3, OsPDIL2;3, PDIL 2-3, OsPDIL2-3, OsTrx27, Trx27,NEF, OsFes1C, Fes1C,GluD1, GluD-1, OsGluD-1, OsEnS-33, EnS-33, GluD,OsBiP5, OsBiP, BiP, BiP5, OsMed37_7, Med37_7,Hsr203j, OsHsr203j,OsBiP3, BiP3,OsBiP2, Bip2,Stt3a, STT3,OsDER2, DER2,Glua1*, Glua1, GLUA-1, GluA-1, GluA1, Glu19, OsEnS-16,OsDjB6, OsERdj3B, ERdj3B,GluB, GluB-1a, OsGluB-1a, GluB-1b, GluB1, OsGluB1,CRT, OsCRT, CRT-2, OsCRT-2, OsCRT2,Glu7*(GluB2), Glu7, GluB2, GLUB2, GLUB-2, GluB-2, GluB-7, GLUB7,OsCNX, OsCNX1, CNX1,OsBiP1, BiP1, BiP, Bip3, OsBiP3, BIP1/OsBIP3, OsMed37_2, Med37_2 ,Glua2*, Glua2, GLUA-2, GluA-2, Glu20, GluA2, OsEnS-137,GluB1, GluB1-A, GluB-1a, GluB-1, OsGluB1, GluB-1b, OsGluB-1b, GLUB1B,glb1(t)*, glb1(t), glb1, alpha-Glb, Glb-1, OsGlb1, Glb1, Glb, OsEnS-77,GluB4, GluB-4, GluB-5, GluB5, GluB-4/5,GluC, OsEnS-36, EnS-36, GLU2.2, GluC-1, OsGluC-1
32781	21224427	Isayenkov S,Isner JC,Maathuis FJ	Rice Two-Pore K+ Channels Are Expressed in Different Types of Vacuoles.	Plant Cell	23(2j	756-68	2011	TPKB,TPKA	TPKb, OsTPKb,TPKa, OsTPKa, OsTpka, TPK1a, OsTPK1a
32782	21229229	Ebana K,Shibaya T,Wu J,Matsubara K,Kanamori H,Yamane H,Yamanouchi U,Mizubayashi T,Kono I,Shomura A,Ito S,Ando T,Hori K,Matsumoto T,Yano M	Uncovering of major genetic factors generating naturally occurring variation in heading date among Asian rice cultivars.	Theor. Appl. Genet.	122(6)	1199-210	2011	HD5,GHD7,SE1,HD9,HD7,HD9,HD6,RFT1,HD2,HD3A,HD16	Hd5(t)*, Hd5, qHD5, HAP3H, OsHAP3H, NF-YB, CBF-A, DTH8 , qHD5(t)*, Ghd8, Ghd8/DTH8, Lhd1, NF-YB11, OsNF-YB11, NFYB11, LH8, DTH8/Ghd8, RH8, DTH8/Ghd8/LHD1, CAR8, DTH8/Ghd8/ OsHAP3H, EF8, OsEF8,Ghd2, Ghd7, OsGhd7, OsCCT26, OsCMF8, OsI, Ghd7/Hd4, Hd4, EH7-1/Hd4, Ghd7-0a, EH7-1, EH7/Ghd7, EH7, OsEH7, GLW7.1, OsGLW7.1,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, OsHd1,  Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,Hd9, qHd9,Hd7(t), qHD7(t),Hd9(t), qHD9(t),Hd6(t)*, OSCKA2, OsCKA2, CKA2, OsCKA2-1, CKA2-1, Hd6/CK2alpha, CK2alpha,FT-L 3, OsFTL3, FTL3, FT-L3, RFT, OsRFT1,Hd2(t), Hd2, qHD2(t), OsPRR37, Os-PRR37, PRR37, Prr4, OsPRR4, DTH7, Os DTH7, OsCCT28, CCT28, Ghd7.1, PRR37/Hd2, EH7-2, EH7-2/Hd2, Hd2/PRR37, PRR37-1a, PRR37-1b, PRR37-1c, PRR37-2a, PRR37- 2, HD7.2,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,Hd16, EL1, CK1, Hd16/CKI, Hd16/EL1
32783	21239643	Fukao T,Yeung E,Bailey-Serres J	The Submergence Tolerance Regulator SUB1A Mediates Crosstalk between Submergence  and Drought Tolerance in Rice.	Plant Cell	23(1)	412-27	2011	LEA3-1,DREB1E,DREB1A,SODA1,APX1,NOE1,DHN1,CATB,APX2,SUB1A,ERF91,SUB1C,CATA,ERF3,SALT,RAB16A,SUB1B	OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3, OsLEA3A, LEA3A,OsDREB1E, OsERF030, OsERF#030, OsERF30, ERF30, AP2/EREBP#160, AP2/EREBP160, OsDREB1-1,OsDREB1A, Os DREB1A, CBF3, OsCBF3, OsDREB1A/OsCBF3, ERF24, OsERF24, OsERF024, OsERF#024, AP2/EREBP#114, AP2/EREBP114, OsDREBL,SodA1, OsSODA1, Mn-SOD, Mn- SOD, OsMSD, MnSOD, OsMnSOD, MnSOD1, OsMnSOD1,OsAPX1, APXa, OsAPXa, OsAPx01, OsAPx1, OSAPX1, APx1, cAPX, APX2, cAPXa, OscAPXa,CATC, OsCat, OsCatC, OsCATC, OsNOE1, noe1, catC, OsCATC, CAT3, OsCAT3, LLM9428, OsLLM9428,LIP9, OsLIP9, lip9, DHN1, DIP1, OsDip1, OsLEA23, OsDhn1, COR410, OsLEA23/DIP1, DIP1/OsLEA23,CatB, CAT-B, OsCatB, OsCATB, OsCAT1B, CAT1B, CAT2, OsCAT2,OsAPX2, OsAPx02, APXb, OsAPx2, OSAPX2, APx2, cAPX, OsAPX1, APX1,Sub1A, Sub1A-1, Sub1A-2, OsSUB1A,OsERF#091, OsERF091, OsERF91, AP59, OsAP59, AP2/EREBP#147, AP2/EREBP147, OsBIERF3, BIERF3,Sub1C, OsSUB1C, OsERF#073, OsERF073, ERF073, OsERF73, ERF73, AP2/EREBP#122, AP2/EREBP122, SUB1B,CATA1, Cat A1*, OSCAT-A, Cat2, CatA1, CAT-A, OsCatA, OsCAT, CAT, catA, OSCATA, OsCATc, OsCATA, OsCAT1A, CAT1, OsCAT1, OsCATC, OsCAT2,AP37, OsAP37, OsERF3, OsERF#075, OsERF075, OsERF75, ERF75, AP2/EREBP#004, AP2/EREBP4, OsBIERF2, BIERF2, DLN23, OsDLN23,salT*(sal1), SalT1*, sal1, Sal1, SALT, ML, SalT, OsSalT, OsJRL, JRL, Osl43, OsL43, OsMBL1, MBL1, OsJRL01, JRL01, OsJRL1, JRL1,Rab16A, rab21, RAB21, OsRab21, OsRAB21, OsRAB-21, OsRab16A, OsLEA29, rab16A, OsRAB16A,Sub1B, OsSUB1B, OsERF#063, OsERF063, ERF063, OsERF63, ERF63, AP2/EREBP#166, AP2/EREBP166
32784	21241786	Geng S,Zhao Y,Tang L,Zhang R,Sun M,Guo H,Kong X,Li A,Mao L	Molecular evolution of two duplicated CDPK genes CPK7 and CPK12 in grass species: A case study in wheat (Triticum aestivum L.).	Gene	475(2)	94-103	2011		
32785	21246257	Turoczy Z,Kis P,Torok K,Cserhati M,Lendvai A,Dudits D,Horvath GV	Overproduction of a rice aldo-keto reductase increases oxidative and heat stress  tolerance by malondialdehyde and methylglyoxal detoxification.	Plant Mol. Biol.	75(4-5)	399-412	2011	AKR3,ARK1,AKR2	OsAKR3, OsALR1, ALR1, OsAKR4-3, AKR4-3,OsARK1, OsAKR4-1, AKR4-1,OsAKR2, AKR4C14, OsAKR4-2, AKR4-2
32786	21251103	Ishikawa R,Ohnishi T,Kinoshita Y,Eiguchi M,Kurata N,Kinoshita T	Rice interspecies hybrids show precocious or delayed developmental transitions in the endosperm without change to the rate of syncytial nuclear division.	Plant J.	65(5)	798-806	2010		
32787	21251104	Yan Y,Zhang Y,Yang K,Sun Z,Fu Y,Chen X,Fang R	Small RNAs from MITE-derived stem-loop precursors regulate abscisic acid signaling and abiotic stress responses in rice.	Plant J.	65(5)	820-8	2010		
32788	21251105	Cai Y,Jia T,Lam SK,Ding Y,Gao C,San MW,Pimpl P,Jiang L	Multiple cytosolic and transmembrane determinants are required for the trafficking of SCAMP1 via an ER-Golgi-TGN-PM pathway.	Plant J.	65(6)	882-96	2010	SCAMP1	Scamp1, OsSCAMP1
32789	21251107	Takahashi M,Teranishi M,Ishida H,Kawasaki J,Takeuchi A,Yamaya T,Watanabe M,Makino A,Hidema J	Cyclobutane pyrimidine dimer (CPD) photolyase repairs ultraviolet-B-induced CPDs  in rice chloroplast and mitochondrial DNA.	Plant J.	66(3)	433-42	2011		
32790	21251109	Okuyama Y,Kanzaki H,Abe A,Yoshida K,Tamiru M,Saitoh H,Fujibe T,Matsumura H,Shenton M,Galam DC,Undan J,Ito A,Sone T,Terauchi R	A multi-faceted genomics approach allows the isolation of rice Pia-blast resistance gene consisting of two adjacent NBS-LRR protein genes.	Plant J.	66(3)	467-79	2011		
32791	21255162	Kusano M,Tabuchi M,Fukushima A,Funayama K,Diaz C,Kobayashi M,Hayashi N,Tsuchiya YN,Takahashi H,Kamata A,Yamaya T,Saito K	Metabolomics data reveal a crucial role of cytosolic glutamine synthetase 1;1 in  coordinating metabolic balance in rice.	Plant J.	66(3)	456-66	2011	GLN1;2,GDH2,GDH1,GLT2,GLT1,GLN1;1,ABC1,GLN1;3,GS2	OsGLN1;2, GSr, RGS8, OsGS1;2, GS1;2, GS1, OsGS1-2, GS1-2, OsGS1.2, GS1.2,OsGDH2,OsGDH1,OsGLT2, OsNADH-GOGAT2, NADH-GOGAT2, OsGOGAT2, GOGAT2, OsGLU2, GLU2,OsGLT1, OsNADH-GOGAT1, NADH-GOGAT1, OsNADH-GOGAT, GOGAT, NADH-GOGAT, OsGOGAT1, GOGAT1, OsGLU1,OsGLN1;1, GS1, RGS28, OsGS1;1, GS1;1, OsGS, GS1, OsGS1, GLN1-1, OsGS1-1, GS1-1, GS1.1, OsGS1.1,OsABC1, SPL32, OsSPL32, OsGLU, OsFd-GOGAT, Fd-GOGAT, ABC1/ OsFd-GOGAT ,OsGLN1;3, OsGS1;3, GS1;3,OsGS2, GLN2, OsGLN2, RGS31, OsRGS31
32792	21263038	Zhu B,Si L,Wang Z,Zhu J,Shangguan Y,Lu D,Zhou Y,Fan D,Li C,Lin H,Qian Q,Sang T,Zhou B,Minobe Y,Han B	Genetic Control of a Transition from Black to Straw-white Seed Hull in Rice Domestication.	Plant Physiol.	155i3)	1301-11	2011	BH4	Bh4, OsBH4, OsATL14, ATL14
32793	21264494	Dai X,You C,Chen G,Li X,Zhang Q,Wu C	OsBC1L4 encodes a COBRA-like protein that affects cellulose synthesis in rice.	Plant Mol. Biol.	75(4-5)	333-45	2011	BC6,BC1L4,CESA7,CESA8,CESA3,CESA1	Bc6*, Bc6, OsCesA9, CESA9, OsCESA9, OS_CESA09, OsCesA 9, CesA9, BC88, SDBC1, OsSDBC1,OsBC1L4,OsCesA7, OsCESA7, OS_CESA07, OsCesA 7, CesA7,OsCesA8, OsCESA8, OS_CESA08, CesA8,OsCesA3, OsCESA3, OS_CESA03,OsCesA1, OsCesA-1, OsCESA1, OS_CESA01, CesA1
32794	21266659	Wang X,Tang H,Paterson AH	Seventy Million Years of Concerted Evolution of a Homoeologous Chromosome Pair, in Parallel, in Major Poaceae Lineages.	Plant Cell	23(1)	27-37	2011		
32795	21274511	Chen S,Liu X,Zeng L,Ouyang D,Yang J,Zhu X	Genetic analysis and molecular mapping of a novel recessive gene xa34(t) for resistance against Xanthomonas oryzae pv. oryzae.	Theor. Appl. Genet.	122(7)	1331-8	2011	XA34	xa34(t)
32796	21278127	Onda Y,Nagamine A,Sakurai M,Kumamaru T,Ogawa M,Kawagoe Y	Distinct Roles of Protein Disulfide Isomerase and P5 Sulfhydryl Oxidoreductases in Multiple Pathways for Oxidation of Structurally Diverse Storage Proteins in Rice.	Plant Cell	23(1)	210-23	2011	CYSP13,GLB1,PDIL1-1,_,CYSR10,PDIL2-3,PDIL1-4,ERO1,_	CysP13, OsCYSP13, CpP13, PG5a, Prol-06, pro13b.11, OsPRO13B.11, PROLM9, OsPROLM9,glb1(t)*, glb1(t), glb1, alpha-Glb, Glb-1, OsGlb1, Glb1, Glb, OsEnS-77,OsPDIL1;1, PDIL1;1, PDIL 1-1, PDI, OsPDIL1-1, OsTrx28, Trx28,BiP,Prol-01, CysR10, OsCysR10, crP10, pro10.1, Ospro10.1,PDIL2;3, OsPDIL2;3, PDIL 2-3, OsPDIL2-3, OsTrx27, Trx27,PDIL1;4, PDIL 1-4, OsPDIL1-4, OsTrx05, Trx05, OsTrx5, Trx5,OsERO1, Ero1,RA17, RAP, RAG1, OsEnS-97
32797	21282525	Zhou S,Wang Y,Li W,Zhao Z,Ren Y,Wang Y,Gu S,Lin Q,Wang D,Jiang L,Su N,Zhang X,Liu L,Cheng Z,Lei C,Wang J,Guo X,Wu F,Ikehashi H,Wang H,Wan J	Pollen Semi-Sterility1 Encodes a Kinesin-1-Like Protein Important for Male Meiosis, Anther Dehiscence, and Fertility in Rice.	Plant Cell	23(1)	111-29	2011	PSS1	pss1, OsPSS1
32798	21284756	Matsubara K,Yamanouchi U,Nonoue Y,Sugimoto K,Wang ZX,Minobe Y,Yano M	Ehd3, encoding a PHD finger-containing protein, is a critical promoter of rice flowering.	Plant J.	66(4)	603-12	2011	EHD3	Ehd3, OsPHD36, PHD36
32799	21293909	Kang M,Fokar M,Abdelmageed H,Allen RD	Arabidopsis SAP5 functions as a positive regulator of stress responses and exhibits E3 ubiquitin ligase activity.	Plant Mol. Biol.	75(4-5)	451-66	2011		
32800	21297036	Hu L,Liang W,Yin C,Cui X,Zong J,Wang X,Hu J,Zhang D	Rice MADS3 Regulates ROS Homeostasis during Late Anther Development.	Plant Cell	23(2)	515-33	2011	MTI4C,RAG	MT-1-4b, OsMT1d, MT1d, OsMT-I-4c, MT1c, OsMT1c,MADS3, OsMADS3, OsMADS3(t), RMADS222, RAG1, rf3
32801	21307283	Zhang Z,Zhang Y,Tan H,Wang Y,Li G,Liang W,Yuan Z,Hu J,Ren H,Zhang D	RICE MORPHOLOGY DETERMINANT Encodes the Type II Formin FH5 and Regulates Rice Morphogenesis.	Plant Cell	23(2)	681-700	2011	BUI1	BUI1, FH5, FH5/BUI1, RMD, OsRMD, OsFH5, FH5/RMD 
32802	21307285	Yang W,Ren S,Zhang X,Gao M,Ye S,Qi Y,Zheng Y,Wang J,Zeng L,Li Q,Huang S,He Z	BENT UPPERMOST INTERNODE1 Encodes the Class II Formin FH5 Crucial for Actin Organization and Rice Development.	Plant Cell	23(2)	661-80	2011	BUI1	BUI1, FH5, FH5/BUI1, RMD, OsRMD, OsFH5, FH5/RMD 
32803	21309865	Ito Y,Kimura F,Hirakata K,Tsuda K,Takasugi T,Eiguchi M,Nakagawa K,Kurata N	Fatty acid elongase is required for shoot development in rice.	Plant J.	66(4)	680-8	2011	OSH1,ONI1	OSKN1, Oskn1, OsKN1, OSH1/Oskn1, HB75,OsONI1, FDH, OsCUT4, CUT4, OsKCS7, KCS7
32804	21309868	Zhiming Y,Bo K,Xiaowei H,Shaolei L,Youhuang B,Wona D,Ming C,Hyung-Taeg C,Ping W	Root hair-specific EXPANSINs modulate root hair elongation in rice.	Plant J.	66(5)	725-34	2011	RHL1,EXPA12,EXPA15,EXPA11,EXPA13,EXPA17,EXPB5,EXPA30,EXPA22,RTH1	RHL1, OsRHL1,OsEXPA12, OsEXP12, osaEXPa1.15,OsEXPA15, OsEXP15, osaEXPa1.8,OsEXPA11, OsEXP11, osaEXPa1.25,OsEXPA13, OsEXP13, osaEXPa1.13,OsEXPA17, OsEXP17, osaEXPa1.31,OsEXPB5, osaEXPb1.19,OsEXPA30,OsEXPA22, OsEXP22, osaEXPa1.9,OsAPY, RTH1, OsAPY3, APY3
32805	21309870	Meyer T,Holscher C,Schwoppe C,von Schaewen A	Alternative targeting of Arabidopsis plastidic glucose 6-phosphate dehydogenase 1 (G6PD1) involves cysteine-dependent interaction with G6PD4 in the cytosol.	Plant J.	66(5)	745-58	2011		
32806	21316795	Liu Y,Xu Y,Xiao J,Ma Q,Li D,Xue Z,Chong K	OsDOG, a gibberellin-induced A20/AN1 zinc-finger protein, negatively regulates gibberellin-mediated cell elongation in rice.	J. Plant Physiol.	168(10)	1098-105	2011	EUI1,SAP11,GA2OX1,GA2OX3	eui1, GA16,17ox, CYP714D1, EUI, CYP714D1/EUI, OsEUI, LG5, OsLG5,OsDOG, OsSAP11, DOG,OsGA2ox1, ga2ox-1, OsGA2ox-1, ga2ox, ga2ox 1, GA2ox1,OsGA2ox3, ga2ox 3, OsGA2ox-3, GA2ox3, GA2ox-3, GA2ox4
32808	21318369	Mall TK,Dweikat I,Sato SJ,Neresian N,Xu K,Ge Z,Wang D,Elthon T,Clemente T	Expression of the rice CDPK-7 in sorghum: molecular and phenotypic analyses.	Plant Mol. Biol.	75(4-5)	467-79	2011		
32809	21318372	Qiao Y,Piao R,Shi J,Lee SI,Jiang W,Kim BK,Lee J,Han L,Ma W,Koh HJ	Fine mapping and candidate gene analysis of dense and erect panicle 3, DEP3, which confers high grain yield in rice (Oryza sativa L.).	Theor. Appl. Genet.	122(7)	1439-49	2011	DEP3	dep3, OspPLAIIIdelta, pPLAIIIdelta
32810	21325138	Li J,Jiang J,Qian Q,Xu Y,Zhang C,Xiao J,Du C,Luo W,Zou G,Chen M,Huang Y,Feng Y,Cheng Z,Yuan M,Chong K	Mutation of Rice BC12/GDD1, Which Encodes a Kinesin-Like Protein That Binds to a  GA Biosynthesis Gene Promoter, Leads to Dwarfism with Impaired Cell Elongation.	Plant Cell	23(2)	628-40	2011	BC12	bc12, gdd, GDD1, BC12/GDD1, OsGDD1, OsBC12/GDD1, OsBC12, LGW, OsLGW
32811	21327937	Wang SS,Wang CS,Tseng TH,Hou YL,Chen KY	High-resolution genetic mapping and candidate gene identification of the SLP1 locus that controls glume development in rice.	Theor. Appl. Genet.	122(8)	1489-96	2011	GW8	SPL16, OsSPL16, SLP1, OsSLP1, qGW8, OsGW8
32812	21331630	Ogo Y,Itai RN,Kobayashi T,Aung MS,Nakanishi H,Nishizawa NK	OsIRO2 is responsible for iron utilization in rice and improves growth and yield  in calcareous soil.	Plant Mol. Biol.	75(6)	593-605	2011		
32813	20926385	Zhang M., Lu S., Li G., Mao Z., Yu X., Sun W., Tang Z., Long M., Su W.	Identification of a residue in helix 2 of rice plasma membrane intrinsic proteins that influences water permeability.	J. Biol. Chem.	285(53)	41982-92	2010		
32814	21178306	Ishikawa R., Thanh P.T., Nimura N., Htun T.M., Yamasaki M., Ishii T.	Allelic interaction at seed-shattering loci in the genetic backgrounds of wild and cultivated rice species.	Genes Genet. Syst.	85(4)	265-271	2010		
32815	21217807	Liu X., Wan X., Ma X., Wan J.	Dissecting the genetic basis for the effect of rice chalkiness, amylose content, protein content, and rapid viscosity analyzer profile characteristics on the eating quality of cooked rice using the chromosome segment substitution line population across eight environments.	Genome	54(1)	64-80	2010		
32816	21037241	Kawakatsu T., Takaiwa F.	Differences in transcriptional regulatory mechanisms functioning for free lysine content and seed storage protein accumulation in rice grain.	Plant Cell Physiol.	51(12)	1964-1974	2010	LKR/SDH,_,RISBZ1,RPBF	OsLKR/SDH, OsLKR, OsSDH,OsLKR/SDH, OsLKR, OsSDH,OsbZIP58, bZIP58, OsEnS-92, OsSMF1, SMF1, OsRISBZ1, RISBZ1/bZIP58,OsDof3, OsDOF3, OsEnS-34, OsDof10, Dof10, OsDof-10, OsDOF1, DOF1, DOF3, OsRPBF, OsDOF7
32817	20938801	Duan Y., Diao Z., Liu H., Cai M., Wang F., Lan T., Wu W.	Molecular cloning and functional characterization of OsJAG gene based on a complete-deletion mutant in rice (Oryza sativa L.).	Plant Mol. Biol.	74(6)	605-615	2010	SL1	sl1(t), sl1, stl1, opb, OPB1, ps, PS, OPB, DLN2, OsDLN2, OsJAG, JAG, OsJAG.1, OsJAG.2, ZOS1-02, OsZOS1-02
32818	21062870	Fujita M., Horiuchi Y., Ueda Y., Mizuta Y., Kubo T., Yano K., Yamaki S., Tsuda K., Nagata T., Niihama M., Kato H., Kikuchi S., Hamada K., Mochizuki T., Ishimizu T., Iwai H., Tsutsumi N., Kurata N.	Rice expression atlas in reproductive development.	Plant Cell Physiol.	51(12)	2060-2081	2010	CSLD5,CSLA1,CSLD3,SAUR9	OsCSLD5,OsCslA1, OsCSLA1 ,OsCSLD3,OsSAUR9, SAUR50
32819	20941508	Shen J., Xie K., Xiong L.	Global expression profiling of rice microRNAs by one-tube stem-loop reverse transcription quantitative PCR revealed important roles of microRNAs in abiotic stress responses.	Mol. Genet. Genomics	284(6)	477-488	2010		
32820	20949308	You C., Dai X., Li X., Wang L., Chen G., Xiao J., Wu C.	Molecular characterization, expression pattern, and functional analysis of the OsIRL gene family encoding intracellular Ras-group-related LRR proteins in rice.	Plant Mol. Biol.	74(6)	617-629	2010	_,_,_,_,_,_,_,PI55-1	OsIRL8,OsIRL7,OsIRL6 ,OsIRL2,OsIRL1,OsIRL5,OsIRL3, IRL3,pi55-1, pi55(t), OsIRL4
32821	21097897	Shih M.-D., Huang L.-T., Wei F.-J., Wu M.-T., Hoekstra F.A., Hsing Y.-I.C.	OsLEA1a, a new Em-like protein of cereal plants.	Plant Cell Physiol.	51(12)	2132-2144	2010	LEA20	OsLEA20, OsLEA1, OsLEA1a
32822	21051443	Matsui H., Miyao A., Takahashi A., Hirochika H.	Pdk1 kinase regulates basal disease resistance through the OsOxi1-OsPti1a phosphorylation cascade in rice.	Plant Cell Physiol.	51(12)	2082-2091	2010	PDK1,OXI1,RLCK178	OsPdk1, Pdk1, OsAGC3, AGC3,OsOxi1, OsAGC10, AGC10,OsPti1a, Pti1a, OsRLCK178
32823		Ye C., Fukai S., Godwin I.D., Koh H., Reinke R., Zhou Y., Lambrides C., Jiang W., Snell P., Redona E.	A QTL controlling low temperature induced spikelet sterility at booting stage in rice.	Euphytica	176(3)	291-301	2010		
32824		Jiang S., Zhang X., Wang J., Chen W., Xu Z.	Fine mapping of the quantitative trait locus qFLL9 controlling flag leaf length in rice.	Euphytica	176(3)	341-347	2010		
32825	20971065	Banerjee J., Das N., Dey P., Maiti M.K.	Transgenically expressed rice germin-like protein1 in tobacco causes hyper-accumulation of H2O2 and reinforcement of the cell wall components.	Biochem. Biophys. Res. Commun.	402(4)	637-643	2010		
32826	20876569	Cheung M.-Y., Xue Y., Zhou L., Li M.-W., Sun S.S.-M., Lam H.-M.	An ancient P-loop GTPase in rice is regulated by a higher plant-specific regulatory protein.	J. Biol. Chem.	285(48)	37359-69	2010	C2DP16,YCHF1	OsGAP1, GAP1, OsC2DP16,OsYchF1, YchF1, OsPM8ATP 
32827	21107422	Chen L.-Q., Hou B.-H., Lalonde S., Takanaga H., Hartung M.L., Qu X.-Q., Guo W.-J., Kim J.-G., Underwood W., Chaudhuri B., Chermak D., Antony G., White F.F., Somerville S.C., Mudgett M.B., Frommer W.B.	Sugar transporters for intercellular exchange and nutrition of pathogens.	Nature	468(7323)	527-532	2010	SWEET3A,XA41,SWEET15,SWEET3B,SWEET7C,SWEET12,SWEET4,SWEET1A,SWEET5,SWEET13,SWEET7D,SWEET16,SWEET7E,SWEET7B,SWEET1B,SWEET2A,SWEET6A,SWEET2B,SWEET6B	OsSWEET3a, SWEET3a,OsSWEET14, SWEET14, Os11N3, Os-11N3, 11N3, Xa41(t), xa41, Os11N3/SWEET14, OsSWEET14/Os11N3,OsSWEET15,OsSWEET3b, SWEET3b,OsSWEET7c, SWEET7c,OsSWEET12,OsSWEET4,OsSWEET1a, SWEET1a,OsSWEET5,OsSWEET13, Xa25(t), Xa25, OsMtN3, Xa25/SWEET13, OsSWEET13/XA25,OsSWEET7d, SWEET7d,OsSWEET16,OsSWEET7e, SWEET7e,OsSWEET7b, SWEET7b,OsSWEET1b, SWEET1b,OsSWEET2a, SWEET2a,OsSWEET6a, SWEET6a,OsSWEET2b, SWEET2b,OsSWEET6b, SWEET6b
32828		Shim J., Panaud O., Vitte C., Mendioro M.S., Brar D.S.	RDA derived Oryza minuta-specific clones to probe genomic conservation across Oryza and introgression into rice (O. sativa L.).	Euphytica	176(2)	269-279	2010		
32829	20888318	Seok H.-Y., Park H.-Y., Park J.-I., Lee Y.-M., Lee S.-Y., An G., Moon Y.-H.	Rice ternary MADS protein complexes containing class B MADS heterodimer.	Biochem. Biophys. Res. Commun.	401(4)	598-604	2010		
32830	20937890	Xia J., Yamaji N., Kasai T., Ma J.F.	Plasma membrane-localized transporter for aluminum in rice.	Proc. Natl. Acad. Sci. U.S.A.	107(43)	18381-5	2010	NRAMP4,ZOS12-02	OsNRAMP4, Nrat1, Nramp6, OsNRAT1, NRAT1, FCO5,OsART1, STAR3, OsZOS12-02, ART1
32831	20878348	Park G.-G., Park J.-J., Yoon J., Yu S.-N., An G.	A RING finger E3 ligase gene, Oryza sativa Delayed Seed Germination 1 (OsDSG1), controls seed germination and stress responses in rice.	Plant Mol. Biol.	74(4)	467-478	2010	DSG1	OsDSG1,  OsRING408, RING408
32832	20849820	Tanaka K., Umeki N., Mitsui T., Fujimoto Z., Maruta S.	Crystallographic analysis reveals a unique conformation of the ADP-bound novel rice kinesin K16.	Biochemical and Biophysical Research Communications	401(2)	251-256	2010		
32833	20713616	Fu F.-F., Xue H.-W.	Coexpression analysis identifies rice starch regulator1, a rice AP2/EREBP family transcription factor, as a novel rice starch biosynthesis regulator.	Plant Physiol.	154(2)	927-938	2010	RSR1,PUL	AP2/EREBP#090, AP2/EREBP90, OsTOE1, TOE1, qHD5, AP2-1, AP2/EREBP/RSR1, OsRSR1, DLN130, DLN130a, DLN130b, OsDLN130, OsDLN130a, OsDLN130b,OsPUL, SDBE, OsPUL3, RE
32836	20962882	Iwata N., Fujino K.	Genetic effects of major QTLs controlling lowtemperature germinability in different genetic backgrounds in rice (Oryza sativa L.).	Genome	53(10)	763-768	2010		
32837		Shen X., Yuan B., Liu H., Li X., Xu C., Wang S.	Opposite functions of a rice mitogen-activated protein kinase during the process of resistance against Xanthomonas oryzae.	Plant J.	64(1)	86-99	2010		
32838	21070404	Shimizu T., Nakano T., Takamizawa D., Desaki Y., Ishii-Minami N., Nishizawa Y., Minami E., Okada K., Yamane H., Kaku H., Shibuya N.	Two LysM receptor molecules, CEBiP and OsCERK1, cooperatively regulate chitin elicitor signaling in rice.	Plant J.	64(2)	204-214	2010	LYK4,_,RLCK330,KS4,LYK1,LYK2,LYK3,RLCK276,LYK6,LYK5,CEBIP,CERK1	OsLysM-RLK1, LysM-RLK1, OsLYK4, OsNFR5/OsRLK2, OsNFR5, NFR5, OsRLK2, RLK2,OsLysM-RLK4, LysM-RLK4, OsRLK3,OsLysM-RLK8, LysM-RLK8, OsRLCK330,OsKS4, KS4, KSL4, OsKSL4, DTS2, OsDTS2, OsTPS16, TPS16, TPS8, OsTPS8,OsLysM-RLK3, LysM-RLK3, OsLYK,OsLysM-RLK5, LysM-RLK5, OsLYK2,OsLysM-RLK6, LysM-RLK6, OsLYK3,OsLysM-RLK10, LysM-RLK10, OsRLCK276, OsCERK2/OsRLK10, OsCERK2, OsRLK10, CERK2, RLK10,OsLysM-RLK7, LysM-RLK7, OsLYK6,OsLysM-RLK2, LysM-RLK2, OsLYK5, OsNFR5, NFR5, OsMYR1/OsLYK2, OsMYR1, OsLYK2, MYR1, LYK2, NFR5/MYR1,CEBiP, Os-LYP1, LYP1, OsCEBiP,OsCERK1, OsLysM-RLK9, Os-CERK1, Os-LysM-RLK9, OsLysMRLK9, OsCERK1/OsLYK9, OsLYK9, LYK9
32839	21115813	Wilson R.A., Gibson R.P., Quispe C.F., Littlechild J.A., Talbot N.J.	An NADPH-dependent genetic switch regulates plant infection by the rice blast fungus.	Proc. Natl. Acad. Sci. U.S.A.	107(50)	21902-7	2010		
32840	20940349	Kawakatsu T., Hirose S., Yasuda H., Takaiwa F.	Reducing rice seed storage protein accumulation leads to changes in nutrient quality and storage organelle formation.	Plant Physiol.	154(4)	1842-1854	2010		
32841	20959420	Tang X., Zhang Z.-Y., Zhang W.-J., Zhao X.-M., Li X., Zhang D., Liu Q.-Q., Tang W.-H.	Global gene profiling of laser-captured pollen mother cells indicates molecular pathways and gene subfamilies involved in rice meiosis.	Plant Physiol.	154(4)	1855-1870	2010	ZEP1,GA2OX5,TOP6A1,GA2OX6,GA2OX8,KAO,GNP1,D35,PAIR3,GAMYBL2,EUI1,GAMYBL1,SLRL1,GA2OX3,GA2OX2,SDS,SPY,MEL1,GID1,COLD11,RPA1A,CPS1,GA20OX3,PRL5,HD16,SLRL2,KS1,GA2OX1,RAD21-4,D18,GA3OX1,SD1	OsZEP1,OsGA2ox5, 2-ODD32, Os2-ODD32, 2ODD32, Os2ODD32,OsTOP6A1, OsSPO11-1, OsSPO11A, SPO11-1,OsGA2ox6,OsGA2ox8,OsKAO, kao, CYP88A5, OSKAO, Os KAO, RPE1, KO1,GA20OX1, OsGA20ox1, 20ox1, GA20ox-1, ga20ox1, Os20ox, C20OX2, OsGA20ox2, OsGA20ox-1, GA20ox1, OsGNP1,d35, d35(t), dwf30, OsKOL2, KOL2, KO2, OsKO2, OSKO2, KO, CYP701A, CYP701A6, Os KO2, OsKOL2/CYP701A,,OsGAMYBL2, Os2R_MYB40, 2R_MYB40,eui1, GA16,17ox, CYP714D1, EUI, CYP714D1/EUI, OsEUI, LG5, OsLG5,OsGAMYBL1, OsMYB80, MYB80, Os2R_MYB66, 2R_MYB66,OsSLRL1, OsGAI, OsSLRL, OsGRAS-1, OsGRAS1, GAI, SLRL, GRAS-1, GRAS1,OsGA2ox3, ga2ox 3, OsGA2ox-3, GA2ox3, GA2ox-3, GA2ox4,OsGA2ox2, ga2ox 2, OsGA2ox-2,OsSDS, Orysa;SDS,OsSPY,mel1, OsMEL1, MEAL1, OsMEAL1, OsAGO5c ,gid1, OsGID1, Thl, Os GID1,OsRAD51A1, RAD51A1, OsCOLD11,OsRPA70a, OsRPA1a, RPA1a,OsCPS1, OsCPS1ent, OsCPS, Os CPS1, OsTPS4, TPS4, TPS29, OsTPS29, OsCPS1-L, OsCPS1-S,OsGA20ox3, ga20ox3,OsGA20ox4, ga20ox4, GA20ox2, Prl5, Prl5/GA20ox4, OsPrl5,Hd16, EL1, CK1, Hd16/CKI, Hd16/EL1,OsSLRL2, OsGRAS-30, OsGRAS30, GRAS-30, GRAS30,OsKS1, KS1, KS1A, KSL1, OsKSL1, OsKS1A, OsKS1B, OsKS1C, Ks1, Os KS1, OsTPS26, TPS6, OsTPS6,OsGA2ox1, ga2ox-1, OsGA2ox-1, ga2ox, ga2ox 1, GA2ox1,OsRad21-4, REC8, OsREC8, OsRAD21-4,d18-h  (d18-I, d18h), dwf15, d25, d18, d18-k, d18-AD, d18-dy, OsGA3ox2, ga3ox2, OsGA3OX2, GA3OX2, OsGA3ox-2, GA3ox-2, GA3ox1,OsGA3ox1, GA3ox1, OsGA3OX1,sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2, OsPHQ1, OsPHq1, PHq1
32842	21105928	Wang Y., Ren Y., Liu X., Jiang L., Chen L., Han X., Jin M., Liu S., Liu F., Lv J., Zhou K., Su N., Bao Y., Wan J.	OsRab5a regulates endomembrane organization and storage protein trafficking in rice endosperm cells.	Plant J.	64(5)	812-824	2010	GLUP4,GLUP3	glup4(esp8), esp8, glup4, OsRab5B2, Rab5a, OsRab5a, GPA1/Rab5a, GPA, GLUP4/Rab5, GLUP4/Rab5a, GPA1, OsGPA1,glup3(esp7), esp7, glup3, OsVPE1, VPE1, OsaLeg3
32843	20924648	Sugano S., Jiang C.-J., Miyazawa S.-I., Masumoto C., Yazawa K., Hayashi N., Shimono M., Nakayama A., Miyao M., Takatsuji H.	Role of OsNPR1 in rice defense program as revealed by genome-wide expression analysis.	Plant Mol. Biol.	74(6)	549-562	2010	NH1	OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2, DLN5, OsDLN5,  OsBTBA1, BTBA1
32844	21062869	Lin S.-I., Santi C., Jobet E., Lacut E., El Kholti N., Karlowski W.M., Verdeil J.-L., Breitler J.C., Perin C., Ko S.-S., Guiderdoni E., Chiou T.-J., Echeverria M.	Complex regulation of two target genes encoding SPX-MFS proteins by rice miR827 in response to phosphate starvation.	Plant Cell Physiol.	51(12)	2119-2131	2010	SPX-MFS2 ,miR827,SPX-MFS1,NLA1	OsSPX-MFS2,miR827a, OsmiR827a, miR827, osa-miR827, osa-MIR827, OsMiR827, miR827b, osa-miR827b, osa-MIR827b,OsSPX-MFS1,OsRFPHC-13, OsNLA, NLA, OsNLA1, OsNLA1.1, OsNLA1.2, OsNLA1.3,  OsRING269, RING269
32845	21041976	Konishi S., Sasakuma T., Sasanuma T.	Identification of novel Mlo family members in wheatand their genetic characterization.	Genes Genet. Syst.	85(3)	167-175	2010		
32846	21098734	Antony G., Zhou J., Huang S., Li T., Liu B., White F., Yang B.	Rice xa13 recessive resistance to bacterial blight is defeated by induction of the disease susceptibility gene Os-11N3.	Plant Cell	22(11)	3864-3876	2010	XA41,XA13	OsSWEET14, SWEET14, Os11N3, Os-11N3, 11N3, Xa41(t), xa41, Os11N3/SWEET14, OsSWEET14/Os11N3,xa13, Xa13, Os8N3, Os-8N3, 8N3, OsSWEET11, SWEET11, OsSWEET11/Xa13, Xa13/Os8N3/SWEET11, Os8N3/Xa13, OsSWEET11/Os8N3, OsSWEET11a, SWEET11a
32847	21098733	Yamamoto Y., Hirai T., Yamamoto E., Kawamura M., Sato T., Kitano H., Matsuoka M., Ueguchi-Tanakaa M.	A rice gid1 suppressor mutant reveals that gibberellin is not always required for interaction between its receptor, GID1, and DELLA proteins.	Plant Cell	22(11)	3589-3602	2010		
32852	20889913	She K.-C., Kusano H., Koizumi K., Yamakawa H., Hakata M., Imamura T., Fukuda M., Naito N., Tsurumaki Y., Yaeshima M., Tsuge T., Matsumoto K., Kudoh M., Itoh E., Kikuchi S., Kishimoto N., Yazaki J., Ando T., Yano M., Aoyama T., Sasaki T., Satoh H., Shimad H.	A novel factor FLOURY ENDOSPERM2 is involved in regulation of rice grain size and starch quality.	Plant Cell	22(10)	3280-3294	2010	FLO2,_,_	flo2, flo3(t), Osflo2, Osflo3(t), Osflo-2, flo-2, FLO2-1, FLO2-2,FLL2,FLL1
32853	21070413	Kishimoto K., Kouzai Y., Kaku H., Shibuya N., Minami E., Nishizawa Y.	Perception of the chitin oligosaccharides contributes to disease resistance to blast fungus Magnaporthe oryzae in rice.	Plant J.	64(2)	343-354	2010	XA21,CEBIP	Xa21*, Xa21, OsXA21,CEBiP, Os-LYP1, LYP1, OsCEBiP
32855	20884799	Barta A., Kalyna M., Reddy A.S.N.	Implementing a rational and consistent nomenclature for serine/arginine-rich protein splicing factors (SR proteins) in plants.	Plant Cell	22(9)	2926-2929	2010	RSZP39,SCL57,RSZP21B,SRP33B,SCL30A,RSP33,SCL26,RSZP21A,SCL25,SC35B,RSZP37A,RSZP37B,SC35C,RSZP36,SC35A,SCL30B,SRP20,RSZP23,SRP33A,SCL28,SRP32,RSP29	Os-RS2Z39, OsRS2Z39, Os-RSZ39, OsRSZ39,Os-SCL57, OsSCL57,Os-RSZ21, OsRSZ21, RSZ21, Os-RSZp21b, OsRSZp21b, RSZp21b,Os-SR33, OsSR33, SR33, OsSRp33b, Os-SRp33b,Os-SCL30a, OsSCL30a, SCL30a,OsRS33, Os-RS33, OsRSp33, Os-RSp33, RS33, RS33.2,Os-SCL26, OsSCL26,Os-RSZ21a, OsRSZ21a, Os-RSZp21a, OsRSZp21a, RSZp21a,Os-SCL25, OsSCL25,OsSC32, Os-SC32, SC32, OsSC35b, Os-SC35b,Os-RS2Z37, OsRS2Z37, RS2Z37, Os-RSZ37a, OsRSZ37a,Os-RS2Z38, OsRS2Z38, Os-RSZ37b, OsRSZ37b,Os-SC25, OsSC25, Os-SC35c, OsSC35c,Os-RS2Z36, OsRS2Z36, Os-RSZ36, OsRSZ36, RSZ36,Os-SC34, OsSC34, SC34, Os-SC35a, OsSC35a,OsSCL30, Os-SCL30, SCL30, OsSCL30b, Os-SCL30b,Os-SR40, OsSR40, SR40, OsSRp20, Os-SRp20, SF2, OsSF2,Os-RSZ23, OsRSZ23, Os-RSZp23, OsRSZp23, RSZp23,Os-SR33a, OsSR33a, SR33a, OsSRp33a, Os-SRp33a, OsSR34, SR34,Os-SCL28, OsSCL28,Os-SR32, OsSR32, SR32, OsSRp32, Os-SRp32,OsRS29, Os-RS29, OsRSp29, Os-RSp29, RSp29
32856	20950890	Fan W., Cui W., Li X., Chen S., Liu G., Shen S.	Proteomics analysis of rice seedling responses to ovine saliva.	J. Plant Physiol.	168(5)	500-509	2011		
32857		Fukayama H., Sugino M., Fukuda T., Masumoto C., Taniguchi Y., Okada M., Sameshima R., Hatanaka T., Misoo S., Hasegawa T., Miyao M.	Gene expression profiling of rice grown in free air CO2 enrichment (FACE) and elevated soil temperature.	Field Crops Research	121(1)	195-199	2011		
32858	20889230	Dubois V., Moritz T., Garcia-Martinez J.L.	Comparison of the role of gibberellins and ethylene in response to submergence of two lowland rice cultivars, Senia and Bomba.	J. Plant Physiol.	168(3)	233-241	2011		
32859	21056641	Han F., hu B.	Evolutionary analysis of three gibberellin oxidase genesin rice, Arabidopsis, and soybean.	Gene	473(1)	23-35	2011		
32860	21265890	Itabashi E., Iwata N., Fujii S., Kazama T., Toriyama K.	The fertility restorer gene, Rf2, for Lead Rice-type cytoplasmic male sterility of rice encodes a mitochondrial glycine-rich protein.	Plant J.	65(3)	359-367	2011	RF2	Rf2 (Rfx), Rfx, Rf2
32861	21115808	Skot L., Sanderson R., Thomas A., Skot K., Thorogood D., Latypova G., Asp T., Armstead I.	Allelic variation in the perennial ryegrass FLOWERING LOCUS T Gene is associated with changes in flowering time across a range of populations.	Plant Physiol.	155(2)	1013-1022	2011		
32862	21265893	Krattinger S.G., Lagudah E.S., Wicker T., Risk J.M., Ashton A.R., Selter L.L., Matsumoto T., Keller B.	Lr34 multi-pathogen resistance ABC transporter: Molecular analysis of homoeologous and orthologous genes in hexaploid wheat and other grass species.	Plant J.	65(3)	392-403	2011		
32863	21288266	Rouached H., Stefanovic A., Secco D., Bulak Arpat A., Gout E., Bligny R., Poirier Y.	Uncoupling phosphate deficiency from its major effects on growth and transcriptome via PHO1 expression in Arabidopsis.	Plant J.	65(4)	557-570	2011		
32864		Suh J.-P., Yang S.-J., Jeung J.-U., Pamplona A., Kim J.-J., Lee J.-H., Hong H.-C., Yang C.-I., Kim Y.-G., Jena K.K.	Development of elite breeding lines conferring Bph18 gene-derived resistance to brown planthopper (BPH) by marker-assisted selection and genome-wide background analysis in japonica rice (Oryza sativa L.).	Field Crops Research	120(2)	215-222	2011		
32865		Ohsumi A., Takai T., Ida M., Yamamoto T., Arai-Sanoh Y., Yano M., Ando T., Kondo M.	Evaluation of yield performance in rice near-isogenic lines with increased spikelet number.	Field Crops Research	120(1)	68-75	2011		
32866	20960223	Fujino K., Sekiguchi H.	Origins of functional nucleotide polymorphisms in a major quantitative trait locus, qLTG3-1, controlling low-temperature germinability in rice.	Plant Mol. Biol.	75(1-2)	1-10	2011	HYPRP5	qLTG-3-1(t), qLTG3-1, OsHyPRP05, OsHyPRP5, HyP/GRP05, HyP/GRP5
32867	21175891	Ohmori Y., Toriba T., Nakamura H., Ichikawa H., Hirano H.-Y.	Temporal and spatial regulation of DROOPING LEAF gene expression that promotes midrib formation in rice.	Plant J.	65(1)	77-86	2011	DL	OsDL, dl(lop), lop, dl, dl1, OsDRPq3, DRPq3
32868	21136139	Asano T., Hakata M., Nakamura H., Aoki N., Komatsu S., Ichikawa H., Hirochika H., Ohsugi R.	Functional characterisation of OsCPK21, a calcium-dependent protein kinase that confers salt tolerance in rice.	Plant Mol. Biol.	75(1)	179-191	2011	P5CS,NHX1,NAC6,CDPK21,CDPK13,RAB16A,BZIP23,SOS1,LEA3-1	OsP5CS, P5CS1, OsP5CS1, OsALDH18B1, ALDH18B1, OsP5CS-1, P5CS-1,OsNHX1, OcNHX1, OgNHX1, OrNHX1, OpNHX1, ObNHX1,OsNAC6, ONAC048, NAC48, SNAC2, SNAC2/OsNAC6, OsNAC6/ONAC048, OsSNAC2, SNAC-2, OsSNAC-2, OsNAC2,OsCDPK21, OsCPK21, CPK21, CPK-21,OsCDPK13, OsCPK13, OsCDPK7, CDPK7, OsCPK13-1, OsCPK13-2,Rab16A, rab21, RAB21, OsRab21, OsRAB21, OsRAB-21, OsRab16A, OsLEA29, rab16A, OsRAB16A,OsbZIP23, OsAREB1, OsABF2, Osbzip23, OsAREB2, OsZIP23, ZIP23,OsSOS1, OsNHA1, NHA1, SOS1/NHX7, NHX7, OsNHX7,OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3, OsLEA3A, LEA3A
32869	21055780	Hong J.Y., Chae M.J., Lee I.S., Lee Y.N., Nam M.H., Kim D.Y., Byun M.O., Yoon I.S.	Phosphorylation-mediated regulation of a rice ABA responsive element binding factor.	Phytochemistry	72(1)	27-36	2011	ABI5	OsABI5, OsbZIP10, OsABF1, OREB1, OsABI5-1, OsABI5-2, OsOREB1, OREB1 
32870	21112065	Ishihara A., Nakao T., Mashimo Y., Murai M., Ichimaru N., Tanaka C., Nakajima H., Wakasa K., Miyagawa H.	Probing the role of tryptophan-derived secondary metabolism in defense responses against Bipolaris oryzae infection in rice leaves by a suicide substrate of tryptophan decarboxylase.	Phytochemistry	72(1)	7-13	2011		
32871	21075959	Seo S., Mitsuhara I., Feng J., Iwai T., Hasegawa M., Ohashi Y.	Cyanide, a coproduct of plant hormone ethylene biosynthesis, contributes to the resistance of rice to blast fungus.	Plant Physiol.	155(1)	502-514	2011		
32872	21175892	Wang Q., Hillwig M.L., Peters R.J.	CYP99A3: Functional identification of a diterpene oxidase from the momilactone biosynthetic gene cluster in rice.	Plant J.	65(1)	87-95	2011		
32873	21071600	Fu J., Liu H., Li Y., Yu H., Li X., Xiao J., Wang S.	Manipulating broad-spectrum disease resistance by suppressing pathogen-induced auxin accumulation in rice.	Plant Physiol.	155(1)	589-602	2011	GH3-2	OsGH3-2, OsGH3.2, GH3.2
32874	21161331	Chai C., Fang J., Liu Y., Tong H., Gong Y., Wang Y., Liu M., Wang Y., Qian Q., Cheng Z., Chu C.	ZEBRA2, encoding a carotenoid isomerase, is involved in photoprotection in rice.	Plant Mol. Biol.	75(3)	211-221	2011		
32875	21223385	Park J.-J., Yi J., Yoon J., Cho L.-H., Ping J., Jeong H.J., Cho S.K., Kim W.T., An G.	OsPUB15, an E3 ubiquitin ligase, functions to reduce cellular oxidative stress during seedling establishment.	Plant J.	65(2)	194-205	2011	PUB15	OsPUB15
32876		Qin X., Liu Y., Mao S., Li T., Wu H., Chu C., Wang Y.	Genetic transformation of lipid transfer protein encoding gene in Phalaenopsis amabilis to enhance cold resistance.	Euphytica	177(1)	33-43	2011		
32877	0	Ashikawa,I., Wu,J., Matsumoto,T. and Ishikawa,R.	Haplotype diversity and molecular evolution of the rice Pikm locus for blast resistance	J. Gen. Plant Pathol.	76(1)	37-42	2010	PIKM	Pik-m, Pi-m, Pi-km, Pikm, Pi m, Pikm1-TS, Pikm2-TS, Pi-km1, Pi-km2
32878	20580815	Chang,K.D., Fang,S.A., Chang,F.C. and Chung,M.C.	Chromosomal conservation and sequence diversity of ribosomal RNA genes of two distant Oryza species	Genomics	96(3)	181-190	2010	18S  rRNA,26S  rRNA	,
32879	0	Chen,J., Wan,J., Jiang,H., Gao,X., Wang,P., Xi,J. and Xu,Z.	Cloning and Expression Analysis of OsNADPH1 Gene from Rice in Drought Stress Response	Rice Science	13	149-154	2006	_	OsNADPH1, NADPH1
32880	20202129	Cho,J.I., Burla,B., Lee,D.W., Ryoo,N., Hong,S.K., Kim,H.B., Eom,J.S., Choi,S.B., Cho,M.H., Bhoo,S.H., Hahn,T.R., Ekkehard Neuhaus,H., Martinoia,E. and Jeon,J.S.	Expression analysis and functional characterization of the monosaccharide transporters, OsTMTs, involving vacuolar sugar transport in rice (Oryza sativa)	New Phytol.	186i3j	657-68	2010	TMT2,TMT1	OsTMT2, AZT1, OsAZT1,OsTMT1, OsAZT4, AZT4
32881	20229250	Dai,L., Wu,J., Li,X., Wang,X., Liu,X., Jantasuriyarat,C., Kudrna,D., Yu,Y., Wing,R.A., Han,B., Zhou,B. and Wang,G.L.	Genomic structure and evolution of the Pi2/9 locus in wild rice species	Theor. Appl. Genet.	121(2)	295-309	2010	PI9,PIZ,PIZT	Pi9(t), Pi9(t)*, Pi9, Pi-9(t),Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2,Piz-t, Pi-zt, Pi-z(t), Pi2/Pizt, Pizt, Pi9, OsPiz-t
32882	19932463	Feng,Q., Huang,T., Zhao,Q., Zhu,J., Lin,Z. and Han,B.	Analysis of collinear regions of Oryza AA and CC genomes	J Genet Genomics	36(11)	667-677	2009		
32883	20963607	Fukuda,A., Nakamura,A., Hara,N., Toki,S. and Tanaka,Y.	Molecular and functional analyses of rice NHX-type Na+/H+ antiporter genes	Planta	233(1)	175-188	2011	NHX3,GPA6,NHX4,NHX2,NHX1	OsNHX3, OsNHX2, NHX2,OsNHX5, NHX5, OsGPA6,OsNHX4,OsNHX2,OsNHX1, OcNHX1, OgNHX1, OrNHX1, OpNHX1, ObNHX1
32884	15032821	Fukuda,A., Okada,Y., Suzui,N., Fujiwara,T., Yoneyama,T. and Hayashi,H.	Cloning and characterization of the gene for a phloem-specific glutathione S-transferase from rice leaves	Physiol. Plantarum	120(4)	595-602	2004	RPP31	OsRPP31, OsGSTF6, GSTF6
32885	21249365	Gao,D., He,B., Zhou,Y. and Sun,L.	Genetic and molecular analysis of a purple sheath somaclonal mutant in japonica rice	Plant Cell Rep.	30(5)	901-11	2011	C	C, Cp, OsC1, Os-C1, C1, OsMyb6, Myb6, OsPL6, PL6, OsGL1E, GL1E, Os2R_MYB63, 2R_MYB63, OsC1PLSr, C1PLSr
32886	0	Gao,F., Chen,J.-M., Xiong,A.-S., Peng,R.-H., Liu,J.-G., Cai,B. and Yao,Q.-H.	Isolation and characterization of a novel AP2/EREBP-type transcription factor OsAP211 in Oryza sativa	Biol. Plant.	53(4)	643-649	2009	ERF35	OsERF#035, OsERF035, OsERF35, AP2/EREBP#148, AP2/EREBP148, OsAP211, ARAG1, OsARAG1
32887	8811865	Groom,Q.J., Torres,M.A., Fordham-Skelton,A.P., Hammond-Kosack,K.E., Robinson,N.J. and Jones,J.D.G.	rbohA, a rice homologue of the mammalian gp91phox respiratory burst oxidase gene	Plant J.	10(3)	515-22	1996	RBOHA	rbohA, OsrbohA, Os rbohA, OsRbohA, OsNox2, Nox2, OsRboh2, Rboh2
32888	20584133	Gross,B.L., Reagon,M., Hsu,S.C., Caicedo,A.L., Jia,Y. and Olsen,K.M.	Seeing red: the origin of grain pigmentation in US weedy rice	Mol. Ecol.	19(16)	3380-3393	2010	RC	Rc, OsbHLH017, OsbHLH17, SD7-1, qSD7-1/qPC7, OsGL3C, GL3C
32889	21121088	Gross,B.L., Steffen,F.T. and Olsen,K.M.	The molecular basis of white pericarps in African domesticated rice: novel mutations at the Rc gene	J. Evol. Biol.	23(12)	2747-2753	2010	RC	Rc, OsbHLH017, OsbHLH17, SD7-1, qSD7-1/qPC7, OsGL3C, GL3C
32890	20227044	Hong,L., Qian,Q., Zhu,K., Tang,D., Huang,Z., Gao,L., Li,M., Gu,M. and Cheng,Z.	ELE restrains empty glumes from developing into lemmas	J Genet Genomics	37(2)	101-115	2010	G1	g1 (lng), lng, g1, ELE, Os ELE, OsG1, G1/ELE, LSL2, OsLSL2
32891	21035096	Hui,L., Lu,L., Heng,Y., Qin,R., Xing,Y. and Jin,W.	Expression of CENH3 alleles in synthesized allopolyploid Oryza species	J Genet Genomics	37(10)	703-711	2010	CENH3	OsCENH3, CenH3
32893	20495565	Jiao,Y., Wang,Y., Xue,D., Wang,J., Yan,M., Liu,G., Dong,G., Zeng,D., Lu,Z., Zhu,X., Qian,Q. and Li,J.	Regulation of OsSPL14 by OsmiR156 defines ideal plant architecture in rice	Nat Genet	42(6)	541-544	2010	WFP	OsSPL14, SPL14, IPA1, WFP/IPA1, OsSPL14/WFP/IPA1, OsIPA1,  IPA1/OsSPL14
32894	23572921	Kanneganti,V. and Gupta,A.K.	Isolation and Expression analysis of OsPME1, encoding for a putative Pectin Methyl Esterase from Oryza sativa (subsp. indica)	Physiol. Mol. Plant Pathol.	15(2)	123-131	2009	PME1	OsPME11, PME11, OsPME1
32895	18818927	Kou,Y., Qiu,D., Wang,L., Li,X. and Wang,S.	Molecular analyses of the rice tubby-like protein gene family and their response to bacterial infection	Plant Cell Rep.	28(1)	113-121	2009	TLP4,TLP13,TLP6,TLP11,TLP1,TLP9,TLP7,TLP14,TLP10,TLP2,TLP5,TLP3,TLP8,TLP12	OsTLP13, TLP13, OsTLP4,OsTLP6, TLP6, OsTLP13, OsFbox569, Os_F0461,  OsFBT13, FBT13,OsTLP14, TLP14, OsTLP6, OsFbox139, Os_F0681,  OsFBT5, FBT5,OsTLP7, TLP7, OsTLP11, OsFbox398, Os_F0421,  OsFBT11, FBT11,OsTLP9, TLP9, OsTLP9a, OsTLP9b, OsTLP9c, OsTLP1, OsFbox034, OsFbox34, Os_F0675,  OsFBT1, FBT1,OsTLP10, TLP10, OsTLP10a, OsTLP10b, OsTLP9, OsFbox267, Os_F0560,  OsFBT9, FBT9,OsTLP3, TLP3, OsTLP7, OsFbox240, Os_F0401,  OsFBT6, FBT6,OsTLP4, TLP4, OsTLP14, OsFbox645, Os_F0315,  OsFBT14, FBT14,OsTLP11, TLP11, OsTLP10, OsFbox278, Os_F0631,  OsFBT10, FBT10,OsTLP12, OsTLP2, OsFbox039, OsFbox39, Os_F0683,  OsFBT2, FBT2,OsTLP8, LP8, OsTLP8a, OsTLP8b, OsTLP8c, OsTLP8d, OsTLP5, OsFbox107, Os_F0446,  OsFBT4, FBT4,OsTLP5, TLP5, OsTLP3, OsFbox050, OsFbox50, Os_F0396,  OsFBT3, FBT3,OsTLP1, OsTLP1a, OsTLP1b, OsTLP1c, OsTLP8, OsFbox259, Os_F0415,  OsFBT7, FBT7,OsTLP2, OsTLP2a, OsTLP2b, OsTLP12, OsFbox402, Os_F0479,  OsFBT12, FBT12
32896	20450965	Kumagai,M., Wang,L. and Ueda,S.	Genetic diversity and evolutionary relationships in genus Oryza revealed by using highly variable regions of chloroplast DNA	Gene	462(1-2)	44-51	2010	_,_,NDHC,_,_,_,_	trnF(GAA), trnF, trnF-GAA,trnG(GCC), trnG, trnG-GCC, trnG-UCC,ndhC,ORF133,matK, ORF542 ,trnV, trnV(UAC), trnV-UAC,trnL(UAA), trnL, trnL-UAA
32897	0	Larkin,P.D. and Park,W.D.	Association of waxy gene single nucleotide polymorphisms with starch characteristics in rice (Oryza sativa L.)	Molecular Breeding	12	335-339	2003	WX1	wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx
32898	20202171	Li,J., Pandeya,D., Nath,K., Zulfugarov,I.S., Yoo,S.C., Zhang,H., Yoo,J.H., Cho,S.H., Koh,H.J., Kim,D.S., Seo,H.S., Kang,B.C., Lee,C.H. and Paek,N.C.	ZEBRA-NECROSIS, a thylakoid-bound protein, is critical for the photoprotection of developing chloroplasts during early leaf development	Plant J.	62(4)	713-25	2010	_,_	OsZNL,ZN, OsZN
32899	0	Liu,N.-Y., Ko,S.-S., Yeh,K.-C. and Charng,Y.-Y.	Isolation and characterization of tomato Hsa32 encoding a novel heat-shock protein	Plant Sci.	170(5)	976-985	2006	HSA32	Hsa32, OsPPS1 
32900	0	Liu,X., Wang,L., Liu,X., Liu,X., Wang,D., Wang,C., Lin,F. and Pan,Q.	The molecular evolution of the rice blast resistance gene Pi36	Int. J. Plant Sci.	171(3)	235-243	2010	PI36	Pi36(t), Pi36
32901	17891605	Li,W., Jiang,G., Zeng,D. and Jin,Y.	Identification of six new box C/D snoRNA gene clusters from rice	IUBMB Life	59(10)	664-674	2007	_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_	snoR191,snoR182,snoR184,snoR183,snoR54,snoR72,snoR69Y,snoR64Ya,snoR64Yb,snoR13Y,snoR180,snoR181,snoR185,snoR186,snoR187,snoR188,snoR189,snoR190
32902	20713469	Luo,S., Peng,J., Li,K., Wang,M. and Kuang,H.	Contrasting evolutionary patterns of the Rp1 resistance gene family in different species of poaceae	Mol. Biol. Evol.	28(1)	313-325	2011	PI37	Pi37(t), Pi37
32903	20182746	MacIntosh,G.C., Hillwig,M.S., Meyer,A. and Flagel,L.	RNase T2 genes from rice and the evolution of secretory ribonucleases in plants	Mol. Genet. Genomics	283(4)	381-396	2010	RNS5,RNS2,RNS7,RNS1,RNS6,RNS4,RNS8,RNS3	OsRNS5,OsRNS2,OsRNS7,OsRNS1,OsRNS6,OsRNS4, OsRRP, RNaseDIS,OsRNS8,OsRNS3, OsRNasePD2, RNasePD2
32904	21253568	Nonomura,K., Eiguchi,M., Nakano,M., Takashima,K., Komeda,N., Fukuchi,S., Miyazaki,S., Miyao,A., Hirochika,H. and Kurata,N.	A Novel RNA-Recognition-Motif Protein Is Required for Premeiotic G(1)/S-Phase Transition in Rice (Oryza sativa L.)	PLoS Genet.	7 (1)	E1001265	2011	MEL2	OsMEL2,  OsRING430, RING430
32905	20195612	Ohta,H., Ogino,A., Kasai,M., Sano,Y. and Kanazawa,A.	Fertility restoration by Ifr1 in rice with BT-type cytoplasmic male sterility is associated with a reduced level, but not processing, of atp6-orf79 co-transcribed RNA	Plant Cell Rep.	29(4)	359-369	2010	IFR,_,RF1B,RF1,_	Ifr, Rf16, Ifr1,ORF79, orf79,RF1b, Rf-1B, PPR7,Rf1 (Rf-1), rf-1, PPR791, PPR8-1, Rf-1, Rf1, Rf-1A, Rf5, Rf1a, RF5, Rf5(t)*(Rf(t)*), RF1A, PPR6, PLS31, OsPLS31,atp6, N-atp6, B-ATP6, B-atp6, atp6-1
32906	0	Park,J.-H., Chung,E.-S., Shin,S.-H., Jeon,E.-H., Kim,M.-J., Lee,H.-Y., Jeung,J.-U., Hyung,N.-I., Lee,J.-H. and Chung,Y.-S.	Enhanced fungal resistance in Arabidopsis expressing wild rice PR-3 (OgChitIVa) encoding chitinase class IV	Plant Biotechnol Rep	3(2)	147-155	2009	CHT5	Cht5, OsChia4a, OsChitIVa, Chia4a, ChitIVa, CHIT3, OsCHIT3
32907	17303063	Peng,R.H., Xiong,A.S., Liu,J.G., Xu,F., Bin,C., Zhu,H. and Yao,Q.H.	Adenosine added on the primer 5' end improved TA cloning efficiency of polymerase chain reaction products	Anal. Biochem	363(1)	163-165	2007	DREB1B	OsDREB1B, ERF31, OsERF031, OsERF#031, OsERF31, AP2/EREBP#169, AP2/EREBP169, OsDREB1b, OsDREB1C, OsCBF1, CBF1
32909	0	Rawat,N., Sinha,D.K., Rajendrakumar,P., Shrivastava,P., Neeraja,C.N., Sundaram,R.M., Nair,S. and Bentur,J.S.	Role of pathogenesis-related genes in rice-gall midge interactions	Curr. Sci.	99(10)	1361-1368	2010	_,RSOSPR10,PR1A	OsPR2, PR2, OsGlu1, Glu1,RSOsPR10, RsOsPR10a, OsPR10a, OsPR10alpha, OsPR10, PR10, OsBETV1, BETV1,OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1, OsPR1b, PR1alpha, OsPR1alpha
32910	17157544	Reddy,A.M., Reddy,V.S., Scheffler,B.E., Wienand,U. and Reddy,A.R.	Novel transgenic rice overexpressing anthocyanidin synthase accumulates a mixture of flavonoids leading to an increased antioxidant potential	Metab. Eng.	9(1)	95-111	2007	ANS	ANS, OsANS1, ANS1, LDOX, LDOX1, OsLDOX, OsLDOX1
32911	0	Reddy,P.M.S. and Padayatty,J.D.	Effects of 5' flanking sequences and changes in the 5' internal control region on the transcription of rice tRNA Gly GCC gene	Plant Mol. Biol. 11 (5), 575-583  REMARK DOI: 10.1007/BF00017457			1988		
32912	0	Reimmann,C., Mauch,F., Dudler,R. and Hofmann,C.	Characteriztaion of a rice gene induced by Pseudomonas syringae pv. syringae: requirement for the bacterial lemA gene function	Physiol. Mol. Plant Pathol.	46(1)	71-81	1995	PIR7A,PIR7B	Pir7a,Pir7b
32913	20522726	Sanyal,A., Ammiraju,J.S., Lu,F., Yu,Y., Rambo,T., Currie,J., Kollura,K., Kim,H.R., Chen,J., Ma,J., San Miguel,P., Mingsheng,C., Wing,R.A. and Jackson,S.A.	Orthologous Comparisons of the Hd1 Region across Genera Reveal Hd1 Gene Lability within Diploid Oryza Species and Disruptions to Microsynteny in Sorghum	Mol. Biol. Evol.	27(11)	2487-2506	2010	_,SE1,_,_,_,_,_,_,_,SERL2,CLF	Nhp2,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, OsHd1,  Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,OsbHLH086, TA1,kanadaptin,,AdIT,SEPK1,NAA, OsATL4 ,Lip,OsSERL2, SERK1, OsBAK1-7, BAK1-7,OsSET24, SDG711, EZ1, OsCLF, OsSDG711
32914	0	Shirasawa,K., Takeuchi,Y., Ebitani,T. and Suzuki,Y.	Identification of gene for rice (Oryza sativa) seed lipoxygenase-3 involved in the generation of stale flavor and development of SNP markers for the lipoxygenase-3 deficiency	Breeding Science	58	169-176	2008	LOX3	Lox3*, lox3(t), LOX-3, Lox3, OsLOX4, LOX4
32915	20584132	Thurber,C.S., Reagon,M., Gross,B.L., Olsen,K.M., Jia,Y. and Caicedo,A.L.	Molecular evolution of shattering loci in U.S. weedy rice	Mol. Ecol.	19(16)	3271-3284	2010	SH4,QSH1	sh4, SH4, SHAT2, SHA1, qSH4, QSH4, OsSh4, Sh4, Osh4, OsMSL23, MSL23,qSH1, qsh1, qSH-1, RIL1, OsRIL1 
32916	20416079	Wang,E., Xun,X., Zhang,L., Zhang,H., Lin,L., Wang,Q., Li,Q., Ge,S., Lu,B.R., Wang,W. and He,Z.	Duplication and independent selection of cell-wall invertase genes GIF1 and OsCIN1 during rice evolution and domestication	BMC Evol. Biol.	10	108	2010	GIF1,CIN1	gif1, CIN2, OsCIN2, OsGIF1, WB1, OsWB1, GIF1/OsCIN2,OSCIN1, OsCIN1
32917	20429951	Wang,Y., Shen,D., Bo,S., Chen,H., Zheng,J., Zhu,Q.H., Cai,D., Helliwell,C. and Fan,L.	Sequence variation and selection of small RNAs in domesticated rice	BMC Evol. Biol.	10	119	2010	MIR166K,MIR395A,MIR164A,MIR395B,MIR164D,MIR164E,MIR440,MIR395I,MIR395J,MIR395K,MIR443,MIR1867,_,_,MIR396F,LHR,_,MIR164C,MIR166L,MIR166H,TAS3A2,TAS3A1,TAS3B1,TAS3B2,MIR399D,MIR399I,MIR1318,MIR166C,MIR1862D,MIR166A,MIR166D,MIR166F,MIR166E,MIR166I,MIR166M,MIR1432,MIR166G,MIR166B,MIR399A,MIR166N,MIR390	miR166k, osa-miR166kosa-miR166k-3p osa-miR166k-5p,OsmiR395a, miR395a, osa-MIR395a,miR164a, osa-miR164a,OsmiR395b, miR395b, osa-MIR395b,miR164d, osa-miR164d,miR164e, osa-MIR164e,miR440, osa-MIR440,OsmiR395i, miR395i, osa-MIR395i,OsmiR395j, miR395j, osa-MIR395j,OsmiR395k, miR395k, osa-MIR395k,miR443, osa-MIR443,miR1867, osa-miR1867, osa-MIR1867,,,miR396f, osa-miR396f, osa-MIR396fosa-miR396f-3p osa-miR396f-5p,OsLHR,,miR164c, osa-miR164c,miR166l, osa-miR166losa-miR166l-3p osa-miR166l-5p,miR166h, osa-miR166hosa-miR166h-3p osa-miR166h-5p,OsTAS3a2, TAS3a2, OsTAS3e, TAS3e,TAS3a1, OsTAS3a1, OsTAS3a, TAS3a,TAS3b1, OsTAS3b1, OsTAS3a, TAS3a, OsTAS3b, TAS3b,OsTAS3b2, TAS3b2, OsTAS3c, TAS3c,OsmiR399d, osa-miR399d, osa-MIR399d, Os-miR399d, miR399d,OsmiR399i, osa-MIR399i, miR399i,miR1318, osa-miR1318, osa-MIR1318,miR166c, osa-miR166cosa-miR166c-3p osa-miR166c-5p,miR1862d, osa-miR1862d, osa-MIR1862d,miR166a, osa-miR166aosa-miR166a-3p osa-miR166a-5p,miR166d, osa-miR166dosa-miR166d-3p osa-miR166d-5p,miR166f, osa-miR166f,miR166e, osa-miR166eosa-miR166e-3p osa-miR166e-5p,miR166i, osa-miR166iosa-miR166i-3p,miR166m, osa-miR166m,miR1432, osa-miR1432, osa-miR1432-5p, osa-MIR1432,miR166g, osa-miR166gosa-miR166g-3p osa-miR166g-5p,miR166b, osa-miR166bosa-miR166b-3p osa-miR166b-5p, OsmiR166b,OsmiR399a, osa-miR399a, osa-MIR399a, Os-miR399a, miR399a,miR166n, osa-miR166n, osa-MIR166n, miR166j, osa-miR166j, osa-MIR166j, osa-miR166j-3p, osa-miR166j-5p,OsmiR390, miR390, osa-MIR390osa-miR390, osa-miR390-3p, osa-miR390-5p
32919	0	Wu,C.-X., Su,S.-C. and Peng,Y.-L.	Molecular cloning and differential expression of an aldehyde dehydrogenase gene in rice leaves in response to infection by blast fungus	Biologia	62(5)	523-528	2007	ALDH7	OsALDH7, osaldh7, LDH, ALDH7B7, OsALDH7B6, ALDH7B6, OsAnt1, Ant1
32920	20585576	Xu,Y., Deng,M., Peng,J., Hu,Z., Bao,L., Wang,J. and Zheng,Z.L.	OsPIE1, the rice ortholog of Arabidopsis PHOTOPERIOD-INDEPENDENT EARLY FLOWERING1, is essential for embryo development	PLoS One	5 (6)	E11299	2010		
32921	0	Yoon,U.H. and Kim,Y.H.	Structural analysis of expressed sequence tags in immature seed of Oryza sativa L.	Journal of Plant Biotechnology (Korean)	36	130-136	2009		
32922	20852017	Yuan,M., Chu,Z., Li,X., Xu,C. and Wang,S.	The Bacterial Pathogen Xanthomonas oryzae Overcomes Rice Defenses by Regulating Host Copper Redistribution	Plant Cell	22(9)	3164-3176	2010	ZIP4,XA13,IRT1,HMA9,COPT2,COPT4,COPT3,COPT1,COPT6,COPT7,COPT5	OsZIP4,xa13, Xa13, Os8N3, Os-8N3, 8N3, OsSWEET11, SWEET11, OsSWEET11/Xa13, Xa13/Os8N3/SWEET11, Os8N3/Xa13, OsSWEET11/Os8N3, OsSWEET11a, SWEET11a,OsIRT1, ZIP10, OsZIP10, OsZIP12, ZIP12,OsHMA9 ,oshma9-1, oshma9-2, HMA9, OsHMP33, HMP33,COPT2, OsCOPT2,COPT4, OsCOPT4,COPT3, OsCOPT3,OsCOPT1,COPT6, OsCOPT6,OsCOPT7,OsCOPT5
32923	20653085	Zheng,X.M. and Ge,S.	Ecological divergence in the presence of gene flow in two closely related Oryza species (Oryza rufipogon and O. nivara)	Mol. Ecol.	19(12)	2439-2454	2010	HD3A,KS1,SSIIC,WX1,LHS1	Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,OsKS1, KS1, KS1A, KSL1, OsKSL1, OsKS1A, OsKS1B, OsKS1C, Ks1, Os KS1, OsTPS26, TPS6, OsTPS6,OsSSIIc, SSII-1, SSII1 ,wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx,OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO, OsLHS1, OsLG3b, LG3b, qLGY3, LGY3, DLN80, OsDLN80, OLR, OsOLR, GW3p6, OsGW3p6, OsMADS1GW3p6, MADS1GW3p6, qLGY3/OsLG3b/GW3p6
32925		N. Tanaka, J-I. Itoh and Y. Nagato	Rice PETER PAN SYNDROME gene regulates juvenile-adult phase transition.	RGN	24	16-17	2008	PPS	OsWD40-55, OsCOP1, COP1, YEL, OsYEL, OsPPS, COP1-1, OsCOP1-1,  OsRING347, RING347
32926		Pupilli-F, Labombarda-P, Caceres-M-E, Quarin-C-L, Arcioni-S	The chromosome segment related to apomixis in Paspalum simplex is homoeologous to the telomeric region of the long arm of rice chromosome 12	Molecular Breeding	8	53-61	2001	APO	apo
32927		Zhou J, Xu Y, Xu P, Deng X, Hu F, Li J, Ren G, Tao D	Introgression and mapping of erect panicle gene from Oryza glaberrma in to Oryza Sativa.	RGN	24	18-21	2008	EP2(t)	Ep2(t)
32928	16514016	Briggs GC, Mouchel CF, Hardtke CS.	Characterization of the plant-specific BREVIS RADIX gene family reveals limited genetic redundancy despite high sequence conservation.	Plant Physiol.	140(4)	1306-16.	2006	BRXL5.P,BRXL4,BRXL3,BRXL2,BRXL1	OsBRXL5.P, OsBRXL5,OsBRXL4,OsBRXL3,OsBRXL2,OsBRXL1
32929		K. TAMURA1, Y. FUKUTA2, M. HIRAE3, S. OYA4, I. ASHIKAWA3 and T. YAGI3	RFLP mapping of a new resistance gene for green rice leafhopper in Kanto PL10	RGN	21	62-63	2004	GRH6	Grh6
32930		D. FUJITA, K. DOI, A. YOSHIMURA and H. YASUI	Introgression of a resistance gene for green rice leafhopper from Oryza nivara into cultivated rice, Oryza sativa L.	RGN	21	64-65	2004	GRH6	Grh6
32931	16673940	Reyna NS, Yang Y.	Molecular analysis of the rice MAP kinase gene family in relation to Magnaporthe grisea infection.	Mol. Plant Microbe Interact.	19(5)	530-40.	2006		
32932		Tasaki, M., Y. Tanaka, Y. Ie,ira. T. Kumamaru, Y. nakamura, K. Ohtsubo and H. Satoh.	Mapping of flo3 gene in rice seed.	Breeding Research	vol.6(Suppl.2)	266	2004	FLO3	flo3
32933		Kei Matsushita, Nobuko Yasuda, Thinlay, Shinzo Koizumi, Taketo Ashizawa, Yoshihiro Sunohara, Shuichi Iida, Osamu Ideta, Hideo Maeda and Yoshikatsu Fujita	A novel blast resistance locus in a rice (Oryza sativa L.) cultivar, Chumroo, of Bhutan	Euphytica	180	273-280	2011	PI46	Pi46(t)
32934	17334827	Okuzaki A, Shimizu T, Kaku K, Kawai K, Toriyama K.	A novel mutated acetolactate synthase gene conferring specific resistance to pyrimidinyl carboxy herbicides in rice.	Plant Mol. Biol.	64(1-2)	219-24	2007	ALS	OsALS, AHAS, OsALS1, ALS1
32935		MIAO Li-li , WANG Chun-lian, ZHENG Chong-ke, CHE Jin-ying, GAO Ying, WEN Yi-chang, LI Gui-quan, ZHAO Kai-jun	Molecular Mapping of a New Gene for Resistance to Rice Bacterial Blight.	Sci. Agric. Sin. 	43(15)	3051-3058	2010	XA34,XA36	xa34(t),
32936		GUO Si-bin1, ZHANG Duan-pin, LIN Xing-hua	Identification and Mapping of a Novel Bacterial Blight Resistance Gene Xa35(t)@Originated from Oryza minuta.	Sci. Agric. Sin. 	43(13)	2611-2618	2010	XA35	
32937		Ginny Antony	Molecular Basis of avrXa7 Mediated virulence in bacterical blight of rice	Dissertation, Kansan State University			2010	XA37	
32938	16473545	Kazan K.	Negative regulation of defence and stress genes by EAR-motif-containing repressors.	Trends Plant Sci.	11(3)	109-12.	2006	ERF3	AP37, OsAP37, OsERF3, OsERF#075, OsERF075, OsERF75, ERF75, AP2/EREBP#004, AP2/EREBP4, OsBIERF2, BIERF2, DLN23, OsDLN23
32939	21119645	Ookawa T, Hobo T, Yano M, Murata K, Ando T, Miura H, Asano K, Ochiai Y, Ikeda M, Nishitani R, Ebitani T, Ozaki H, Angeles ER, Hirasawa T, Matsuoka M	New approach for rice improvement using a pleiotropic QTL gene for lodging resistance and yield.	Nat Commun.	1	132.	2010	APO1,SCM1	apo1(t), apo1, SCM2, SCM2/APO1, OsFbox321, Os_F0393, Pbl6/APO1, Pbl6, OsPbl6,  OsFBX202, FBX202,
32940	20163552	Zhao FJ, Ago Y, Mitani N, Li RY, Su YH, Yamaji N, McGrath SP, Ma JF.	The role of the rice aquaporin Lsi1 in arsenite efflux from roots.	New Phytol.	186(2)	392-9.	2010	LSI1	lsi1, NIP2-1, OsNIP2;1, NIP2;1, OsLsi1, lsi(t), OsNIP2.1/OsLsi1/OsSIIT1, OsNIP2.1, NIP2.1
32941	15111712	Shuichi Yanagisawa	Dof Domain Proteins: Plant-Specific Transcription Factors Associated with Diverse Phenomena Unique to Plants	Plant Cell Physiol.	45(4)	386-391	2004	RPBF	OsDof3, OsDOF3, OsEnS-34, OsDof10, Dof10, OsDof-10, OsDOF1, DOF1, DOF3, OsRPBF, OsDOF7
32942	12475498	Shuichi Yanagisawa	The Dof family of plant transcription factors	Trends Plant Sci.	7(12)	555-560	2002	RPBF,RDD1,DOF1,DOF5,DOF4	OsDof3, OsDOF3, OsEnS-34, OsDof10, Dof10, OsDof-10, OsDOF1, DOF1, DOF3, OsRPBF, OsDOF7,OsDof2, OsDof9, Dof9, OsDof-9, DLN64, OsDLN64, OsDof8, Dof8,OsDof1,OsDof5, OsDof6, Dof6, OsDof-6, DOF6,OsDof4, OsDof8, Dof8, OsDof-8, DOF8, OsDof10, Dof10
32943	15316287	Tian C, Wan P, Sun S, Li J, Chen M.	Genome-wide analysis of the GRAS gene family in rice and Arabidopsis.	Plant Mol. Biol.	54	519-532	2004	GRAS57,DLT,GRAS49,GRAS56,GRAS28,WG3,GRAS48,CIGR2,GRAS4,GRAS7,GRAS31,GRAS29,HAM1,GRAS44,SLR1,GRAS27,GRAS24,GRAS20,GRAS37,PH1,GRAS43,NSP1,SHR2,SCR,GRAS25,SLRL2,SCR1,SLRL1,NSP2,GRAS17,SHR1,HAM3,GRAS53,GRAS45,GRAS39,CIGR1,GRAS11,GRAS46,GRAS50,HAM2,GRAS6,GRAS10,GRAS40,GRAS42,GRAS16,GRAS52,GRAS55,GRAS35,GRAS26,GRAS23,GRAS12,GRAS47,GRAS22,MOC1,GRAS54,GRAS5,GRAS2	OsGRAS-57, OsGRAS57, GRAS-57,dlt, OsGRAS32, OsDLT, OsDLT1, DTL1, OsGRAS-32, OsGRAS32, GRAS-32, GRAS32, SMOS2/DLT, SMOS2, OsSMOS2, OsGS6, GS6,OsGRAS-49, OsGRAS49, GRAS-49, OsGRAS47, GRAS47,OsGRAS-56, OsGRAS56, GRAS-56, DLN259, OsDLN259, OsGRAS53, GRAS53,OsGRAS-28, OsGRAS28, GRAS-28, OsGRAS25, GRAS25 ,OsSCRL, SCRL, Os-SCL7, OsSCL7, SCL7, OsGRAS-19, OsGRAS19, GRAS-19, GRAS19, OsGRAS18, GRAS18 ,OsGRAS-48, OsGRAS48, GRAS-48,OsCIGR2, OsGRAS-36, OsGRAS36, GRAS-36, GRAS36,OsGRAS-4, OsGRAS4, GRAS-4,OsGRAS-7, OsGRAS7, GRAS-7,OsGRAS-31, OsGRAS31, GRAS-31, OsGRAS28, GRAS28, SCL6-I, OsSCL6-I,OsGRAS-29, OsGRAS29, GRAS-29, OsGRAS26, GRAS26 ,OsSCL1, SCL1, OsHAM1, OsGRAS-9, OsGRAS-9, GRAS-9, GRAS9, OsGRAS8, GRAS8, SCL6-II, OsSCL6-II,OsGRAS-44, OsGRAS44, GRAS-44,slr1-1, slr1, slr, GAI, OsGAI, OsSLR1, Os SLR1, OsRGA1, OsGRAS-18, OsGRAS-18, GRAS-18, GRAS18, SLR-1,OsGRAS-27, OsGRAS27, GRAS-27, OsGRAS24, GRAS24 ,OsGRAS-24, OsGRAS24, GRAS-24,OsGRAS-20, OsGRAS20, GRAS-20, OsGRAS19, GRAS19 ,OsGRAS-37, OsGRAS37, GRAS-37, OsGRAS35, GRAS35 ,SCL1, OsSCL1, OsGRAS-3, OsGRAS3, GRAS-3, GRAS3, OsPH1,  ph1, CIGR, OsCIGR,OsGRAS-43, OsGRAS43, GRAS-43, OsGRAS39, GRAS39 ,Os NSP1, OsNSP1, OsGRAS-14, OsGRAS14, GRAS-14, GRAS14,OsSHR2, OsGRAS-15, OsGRAS15, GRAS-15, GRAS15,OsSCR, OsSCR2, SCR2, OsGRAS-51, OsGRAS51, GRAS-51, GRAS51,OsGRAS-25, OsGRAS25, GRAS-25,OsSLRL2, OsGRAS-30, OsGRAS30, GRAS-30, GRAS30,OsSCR1, OsSCR, OsGRAS-41, OsGRAS41, GRAS-41, GRAS41,OsSLRL1, OsGAI, OsSLRL, OsGRAS-1, OsGRAS1, GAI, SLRL, GRAS-1, GRAS1,Os NSP2, OsNSP2, OsGRAS-13, OsGRAS13, GRAS-13, GRAS13, OsGRAS12, GRAS12,OsSCL14, SCL14, OsGRAS-17, OsGRAS17, GRAS-17, DLN96, OsDLN96, OsGRAS15, GRAS15 ,OsSHR1, OsGRAS-38, OsGRAS38, GRAS-38, GRAS38, DLN189, OsDLN189, OsSHR, SHR,OsHAM3, OsGRAS-21, OsGRAS21, GRAS-21, GRAS21, OsGRAS20, GRAS20 ,OsGRAS-53, OsGRAS53, GRAS-53,OsGRAS-45, OsGRAS45, GRAS-45, DLN246, OsDLN246, OsGRAS41, GRAS41 ,OsGRAS-39, OsGRAS39, GRAS-39,OsCIGR1, OsGRAS-34, OsGRAS34, GRAS-34, GRAS34,OsGRAS-11, OsGRAS11, GRAS-11,OsGRAS44, OsGRAS-44, GRAS-44, GRAS44, OsGRAS-46, OsGRAS46, GRAS-46,OsGRAS-50, OsGRAS50, GRAS-50,OsHAM2, OsGRAS-8, OsGRAS8, GRAS-8, GRAS8,OsGRAS-6, OsGRAS6, GRAS-6, OsGRAS5, GRAS5 ,OsGRAS-10, OsGRAS10, GRAS-10,OsGRAS-40, OsGRAS40, GRAS-40,OsGRAS-42, OsGRAS42, GRAS-42, PsiOsGRAS8, PsiGRAS8 ,AM18, OsAM1, OsGRAS-16, OsGRAS16, GRAS-16, PsiOsGRAS4, , PsiGRAS4  ,OsGRAS-52, OsGRAS52, GRAS-52,OsGRAS-55, OsGRAS55, GRAS-55, PsiOsGRAS10, PsiGRAS10,OsGRAS-35, OsGRAS35, GRAS-35, OsGRAS32, GRAS32 ,OsGRAS-26, OsGRAS26, GRAS-26, DLN137, OsDLN137, OsGRAS23, GRAS23 ,OsGRAS23, OsGRAS-23, GRAS-23, OsGRAS22, GRAS22 ,OsGRAS-12, OsGRAS12, GRAS-12, OsGRAS11, GRAS11 ,OsGRAS-47, OsGRAS47, GRAS-47, HINGE4, OsHINGE4,OsGRAS-22, OsGRAS22, GRAS-22,moc1, OsMOC1, OsGRAS-33, OsGRAS33, GRAS-33, GRAS33, GNP6, OsGNP6,OsGRAS-54, OsGRAS54, GRAS-54,OsGRAS-5, OsGRAS5, GRAS-5,OsGRAS-2, OsGRAS2, GRAS-2
32944	17655651	Arite T, Iwata H, Ohshima K, Maekawa M, Nakajima M, Kojima M, Sakakibara H, Kyozuka J.	DWARF10, an RMS1/MAX4/DAD1 ortholog, controls lateral bud outgrowth in rice.	Plant J.	51(6)	1019-1029	2007	D3,CCD8A,D14,D10,FC1,D17	d3, dwf3, D3/OsMAX2, Os_F0760, SOL1, OsORE9, ORE9, MAX2, OsRFPH2-10, RFPH2-10, OsD3,  OsFBL27, FBL27,OsCCD8a, OsCCD8c, CCD8a, CCD8c,d14(d10), dwf13, d10, d14, D88, HTD2, OsHTD2, OsD14, qPPB3, D88/D14, HTD4,d10(d15,d16), d16, d15, dwf9, d10, OsCCD8b, OsCCD8, CCD8, OsD10,fc1, OsTB1, tb1, OsTB1/FC1, Os TB1, TB1, OsFC1, MP3, OsMP3,d17(t), dwf14, d17, htd1, OsCCD7, CCD7, D17/HTD1, HTD1, OsHTD1, OsD17
32945	19825016	Qiao Y, Jiang W, Lee J, Park B, Choi MS, Piao R, Woo MO, Roh JH, Han L, Paek NC, Seo HS, Koh HJ.	SPL28 encodes a clathrin-associated adaptor protein complex 1, medium subunit micro 1 (AP1M1) and is responsible for spotted leaf and early senescence in rice (Oryza sativa).	New Phytol.	185(1)	258-74.	2010	SPL28	OsSPL28, PSL50, OsPSL50, AP1M1, OsAP1M1
32946	16809061	Platten JD, Cotsaftis O, Berthomieu P, Bohnert H, Davenport RJ, Fairbairn DJ, Horie T, Leigh RA, Lin HX, Luan S, Maser P, Pantoja O, Rodriguez-Navarro A, Schachtman DP, Schroeder JI, Sentenac H, Uozumi N, Very AA, Zhu JK, Dennis ES, Tester M.	Nomenclature for HKT transporters, key determinants of plant salinity tolerance.	Trends Plant Sci.	11(8)	372-4.	2006	HKT1,HKT4,HKT7,HKT5,SKC1,HKT6,HKT3,HKT2,HKT9	OsHKT1, OsHKT2;1, HKT2;1, Ni (Nipponbare)-OsHKT1, Po (Pokkali)-HKT1, OsHKT1;1, HKT1;1,OsHKT4, OsHKT1;1, HKT1;1, OsHKT2, RNC4, OsHKT1;1-FL, OsHKT1;1-V1, OsHKT1;1-V2, OsHKT1;1-V3, OsHKT1;1-V4, OsHKT1;1-V5, OsHKT1;1-V6, OsHKT1;1-V7, OsHKT1;1-V8,OsHKT7, OsHKT1;4, HKT1;4,OsHKT5, OsHKT1;2,OsHKT8, HKT8, Os-HKT1;5, OsHKT1;5, HKT1;5, SKC1, qSKC-1(t), OsSKC1,OsHKT6, OsHKT1;3, HKT1;3, OsHKT1;3_FL, OsHKT1;3_V1, OsHKT1;3_V2, OsHKT1;3_V3, OsHKT1;3_V4, OsHKT1;3_V5,OsHKT3, OsHKT2;3, HKT2;3,OsHKT2, OsHKT2;2,OsHKT9, OsHKT2;4, HKT2;4
32949	21637817	An,X.J., Deng,Z.Y. and Wang,T.	OsSpo11-4, a Rice Homologue of the Archaeal TopVIA Protein, Mediates Double-Strand DNA Cleavage and Interacts with OsTopVIB	PLoS One	6 (5)	e20327	2011	TOP6A3,TOP6B,TOP6A2,SPO11-5,SPO11-4,TOP6A1	OsTOP6A3, OsSPO11-3, OsSPO11C,OsTOP6B, OsSPO11-6B,OsTOP6A2, OsSpo11-2, OsSPO11-2, OsSPO11B, SPO11-2,OsSPO11-5, OsSPO11-5C, SPO11-1A, SPO11-1B, SPO11-1C, SPO11-1D, OsUBP13, UBP13, OsUBP35, UBP35,OsSPO11-4, OsSPO11D,OsTOP6A1, OsSPO11-1, OsSPO11A, SPO11-1
32950	21646530	Asano,K., Yamasaki,M., Takuno,S., Miura,K., Katagiri,S., Ito,T., Doi,K., Wu,J., Ebana,K., Matsumoto,T., Innan,H., Kitano,H., Ashikari,M. and Matsuoka,M.	Artificial selection for a green revolution gene during japonica rice domestication	Proc. Natl. Acad. Sci. U.S.A.	108(27)	11034-9	2011	SD1	sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2, OsPHQ1, OsPHq1, PHq1
32951	21602323	Chin,J.H., Gamuyao,R., Dalid,C., Bustamam,M., Prasetiyono,J., Moeljopawiro,S., Wissuwa,M. and Heuer,S.	Developing rice with high yield under phosphorus deficiency:Pup1 sequence to application	Plant Physiol.	156i3j	1202-16	2011		
32952	20924028	Cotsaftis,O., Plett,D., Johnson,A.A., Walia,H., Wilson,C., Ismail,A.M., Close,T.J., Tester,M. and Baumann,U.	Root-specific transcript profiling of contrasting rice genotypes in response to salinity stress	Mol Plant	4(1)	25-41	2011	SKC1,HKT2,TIP2;1,HKT1	OsHKT8, HKT8, Os-HKT1;5, OsHKT1;5, HKT1;5, SKC1, qSKC-1(t), OsSKC1,OsHKT2, OsHKT2;2,OsTIP2;1, TIP2-1, TIP2,OsHKT1, OsHKT2;1, HKT2;1, Ni (Nipponbare)-OsHKT1, Po (Pokkali)-HKT1, OsHKT1;1, HKT1;1
32953	16617180	Gross,J., Cho,W.K., Lezhneva,L., Falk,J., Krupinska,K., Shinozaki,K., Seki,M., Herrmann,R.G. and Meurer,J.	A plant locus essential for phylloquinone (vitamin K1) biosynthesis originated from a fusion of four eubacterial genes	J. Biol. Chem.	281(25)	17189-17196	2006	_	PHYLLO
32954	0	Huang,J., Cao,Y., Zhang,H. and Yang,J.	Molecular cloning and sequence analysis of a novel C2H2 zinc finger cDNA from rice	J. Nanjing Agri. Univ.iNanjing Nongye Daxue Xuebaoj	25(2)	110-112	2002	ZFP179	OsZFP179, DLN27, OsDLN27
32955	21515697	Li,H., Yuan,Z., Vizcay-Barrena,G., Yang,C., Liang,W., Zong,J., Wilson,Z.A. and Zhang,D.	PERSISTENT TAPETAL CELL1 Encodes a PHD-Finger Protein That Is Required for Tapetal Cell Death and Pollen Development in Rice	Plant Physiol.	156(2)	615-630	2011	PTC1	OsMS1, tms9-1, OsPTC1, MS1, TMS9-1, OsTMS9-1
32956	21221134	Li,W., Zhong,S., Li,G., Li,Q., Mao,B., Deng,Y., Zhang,H., Zeng,L., Song,F. and He,Z.	Rice RING protein OsBBI1 with E3 ligase activity confers broad-spectrum resistance against Magnaporthe oryzae by modifying the cell wall defence	Cell Res.			2011	_	OsBBI1,  OsRING242, RING242
32957	21400109	Li,Z.M., Zheng,X.M. and Ge,S.	Genetic diversity and domestication history of African rice (Oryza glaberrima) as inferred from multiple gene sequences	Theor. Appl. Genet.	123(1)	21-31	2011	ADH1,_,CPD1,KS1,RL17,TFIIAGAMMA1,_,SSIIC,LHS1,WX1,GBSSII,D1,GL1-6	Adh1, Adh1/2, adh1/adh2, OsADH1,NP122,cbp1, R-CPD1, CBP I, CBP1, OsSCP65, SCP65,OsKS1, KS1, KS1A, KSL1, OsKSL1, OsKS1A, OsKS1B, OsKS1C, Ks1, Os KS1, OsTPS26, TPS6, OsTPS6,NP39, OsSNF7.2, SNF7.2, OsRL17,OsTFIIAgamma1, OsTFIIAc-1, TFIIAc-1, TFIIAgamma-1,NP1977, OsVDAC8, VDAC8, Os1977,OsSSIIc, SSII-1, SSII1 ,OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO, OsLHS1, OsLG3b, LG3b, qLGY3, LGY3, DLN80, OsDLN80, OLR, OsOLR, GW3p6, OsGW3p6, OsMADS1GW3p6, MADS1GW3p6, qLGY3/OsLG3b/GW3p6,wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx,GBSS2, OsGBSSII, OsGBSS2,d1, GPA1, GA1, OsGA1, RGA1, dwf1, XA7, RGA, D1/RGA1, D89, TGW5, OsTGW5, SRG5, OsSRG5,Os0053, OsGL1-6
32958	20194759	Masumoto,C., Miyazawa,S., Ohkawa,H., Fukuda,T., Taniguchi,Y., Murayama,S., Kusano,M., Saito,K., Fukayama,H. and Miyao,M.	Phosphoenolpyruvate carboxylase intrinsically located in the chloroplast of rice plays a crucial role in ammonium assimilation	Proc. Natl. Acad. Sci. U.S.A.	107(11)	5226-5231	2010	PPC2A,PPC4,PPC2,PPPCB,PEPC1,PPC2B	Osppc, OSPPC, Osppc2a, ppc2a,PEPC-2, Osppc4, ppc4,Osppc3, Osppc2, ppc3,ppc2,Osppc-b, OsSTA1, ppc-b, STA1, BTPC, OsBTPC,PEPC-1, Osppc1, ppc1,Osppc2b, ppc2b
32960	20840506	Miyadate,H., Adachi,S., Hiraizumi,A., Tezuka,K., Nakazawa,N., Kawamoto,T., Katou,K., Kodama,I., Sakurai,K., Takahashi,H., Satoh-Nagasawa,N., Watanabe,A., Fujimura,T. and Akagi,H.	OsHMA3, a P1B-type of ATPase affects root-to-shoot cadmium translocation in rice by mediating efflux into vacuoles	New Phytol.	189(1)	190-199	2011	ZIP8,GCC7	OsZIP8, OsZIP1, ZIP1, OsZIP13, ZIP13,HMA3, OsHMA3, OsHMA3a, OsHMA3n, osHMA3, OsHMP34, HMP34
32961	21388416	Nocito,F.F., Lancilli,C., Dendena,B., Lucchini,G. and Sacchi,G.A.	Cadmium retention in rice roots is influenced by cadmium availability, chelation and translocation	Plant Cell Environ.	34(6)	994-1008	2011	HMA2,PCS5,GCC7,PCS1	OsHMA2, osHMA2, OsHMA2v ,OsPCS, PCS, OsPCS2, PCS2, OsPCS2a, PCS2a, OsPCS2b, PCS2b, OsPCS1, PCS1, OsPCS1a, OsPCS1b, OsPCS1c, OsPCS1full, OsPCS5,HMA3, OsHMA3, OsHMA3a, OsHMA3n, osHMA3, OsHMP34, HMP34,OsPCS1, OsPCS2, PCS2, OsPCS15, PCS15
32962	20796245	Nock,C.J., Waters,D.L., Edwards,M.A., Bowen,S.G., Rice,N., Cordeiro,G.M. and Henry,R.J.	Chloroplast genome sequences from total DNA for plant identification	Plant Biotechnol J.	9(3)	328-333	2011	RPS18,_,PSAC,RPS7,RPS14,CLPP,RPOC1,NDHB,RPOB,RPL33,RPS4,RPS19,PSAB,NDHE,RPS11,RPL23,PSBI,_,PSBN,_,RPL16,PSBH,PSBD,NDHK,NDHI,NDHC,NDHH,RPL22,NDHG,PSBF,RPL36,PSBE,_,INFA,_,NDHF,RPS7,_,_,PSBM,YCF4,_,PSBL,NDHJ,RPL23,_,RPL32,PSBK,RPS15,RPS15,RPS2,PETD,ATPF,RPS3,PSAA,PETA,PSBC,RPS8,PSBA,RPOA,_,RPL2,PSBB,NDHA,_,_,NDHD,RBCL,RPS19,16S  rRNA,4.5S  rRNA,5S  rRNA,5S  rRNA,4.5S  rRNA	rps18,psbN,psaC, OsPSAC,rps7,rps14 ,ORF216, ClpP, clpP,rpoC1, RPO beta', RPObeta', OsRPOC1,ndhB,rpoB, RpoB, Rpobeta,rpl33,rps4 ,rps19,PsaB, psaB, PsAA2, psaA2,ndhE,rps11,rpl23,psbI,ORF321, ccsA,psbN,matK, ORF542 ,rpl16,psbH, psbF ,psbD, D2, OsPsbD1, OsPsbD2,psbG, ndhK,ORF178, ndhI,ndhC,ORF393, ndhH,rpl22,ndhG,psbF,rpl36,psbE,rpl2,infA,rpoC2,ndhF,rps7,atpH,ORF56, ndhH,psbM,Ycf4, ORF185,ORF106, accD,psbL,ORF159, ndhJ,rpl23,ORF230, cemA,rpl32, ORF63,psbK,rps15,rps15,rps2,petD, OsPETD,atpF, OsatpF,rps3,PsaA, psaA, PsAA1, psaA1,petA, Cytf, cytF, Cyt f, OsPETA,psbC, cp43, OsPSBC, OsCP43,rps8,PsbA, psbA, OsPsbA, PSBD1, OsPSBD1, psbD1,rope, rpoalpha, Rpoalpha, rope, RpoA ,atpI,rpl2,psbB, OsPSBB,ndhA,atpA,atpE,ndhD, NdhD, NDH4, NADH4,rbcL, rbcA, OsrbcL,rps19,rrn16,rrn4.5,rrn5,rrn5,rrn4.5
32964	16887895	Ogo,Y., Itai,R.N., Nakanishi,H., Inoue,H., Kobayashi,T., Suzuki,M., Takahashi,M., Mori,S. and Nishizawa,N.K.	Isolation and characterization of IRO2, a novel iron-regulated bHLH transcription factor in graminaceous plants	J. Exp. Bot.	57(11)	2867-2878	2006	IRT1,NAS1,NAS3,IRO2,APT1,FDH	OsIRT1, ZIP10, OsZIP10, OsZIP12, ZIP12,OsNAS1,OsNAS3,OsIRO2, OsbHLH056, bHLH056, bHLH56, OsbHLH56,OsAPT1, APRT,OsFDH, FDH 1, FDH1, OsFDH1
32966	21494675	Sun,M.M., Abdula,S.E., Lee,H.J., Cho,Y.C., Han,L.Z., Koh,H.J. and Cho,Y.G.	Molecular aspect of good eating quality formation in japonica rice	PLoS One	6 (4)	e18385	2011	WX1,SBE3,ALK,SBE1,SSI	wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx,SBEIII*, SBEIII, Sbe3, RBE3, QEIIa, QEIIA, BEIIb, BEIIB, SBEIIb, OsBEIIb, sbe3, SBE III, OsSBEIIb, SBEIIb,alk, SSII-3, OsSSIIa, OsSSII-3, SSIIa, SSS2A, OsSSIIaChr6, SS2a,sbe1, Rbe1. Sbe1, sbe1*(QEI), RBE1, BEI, SBE I, QEI, OsBEI, BE1, OsSBE1, OsSBEI, SBEI,OsSSI, SSS 1, SSS1, SS1, OsSS1, SSSI, OsSSSI
32969	12897262	Vitha,S., Froehlich,J.E., Koksharova,O., Pyke,K.A., van Erp,H. and Osteryoung,K.W.	ARC6 is a J-domain plastid division protein and an evolutionary descendant of the cyanobacterial cell division protein Ftn2	Plant Cell	15(8)	1918-1933	2003	_	ARC6
32970	20465413	Wu,T., Guo,A., Zhao,Y., Wang,X., Wang,Y., Zhao,D., Li,X., Ren,H. and Dong,H.	Ectopic expression of the rice lumazine synthase gene contributes to defense responses in transgenic tobacco	Phytopathology	100(6)	573-581	2010	_	OsLS
32971	18987217	Yilmaz,A., Nishiyama,M.Y. Jr., Fuentes,B.G., Souza,G.M., Janies,D., Gray,J. and Grotewold,E.	GRASSIUS: a platform for comparative regulatory genomics across the grasses	Plant Physiol.	149(1)	171-180	2009	DOF5,_,SPL4,_,WRKY26,DLN231,2R_MYB73 ,SGSD3,_,_,_,_,_,_,_,_,_,_,DOS,WRKY121,_,ERF33,_,DLN17,E2F1,_,LIP19,BHLH60,SAP16,RAI1,DPF,WRKY19,WRKY67,TIFY6A,BBX6,BZIP42,DRAP1,2R_MYB2 ,BHLH31,BSRD1,C3H32,ZFP182,BHLH44,BHLH148,HMGB707,_,RNG1,PLT2,BHLH083,LFS,ERF50,BRD2,WRKY69,BZIP63,_,_,_,EIL2,HSFB1,BHLH59,WRKY87,ZFP15,ICE2,BHLH1,_,WRKY51,WRKY47,BHLH98,WRKY72,ARID1,EHD3,WRKY10,WRKY11	OsDof5, OsDof6, Dof6, OsDof-6, DOF6,,OsSPL4,R2R3-MYB,OsWRKY26, OsWRKY59, DLN19, OsDLN19,R2R3-MYB, OsDLN231, OsMYB108, MYB108, OsMYB31, MYB31, Os2R_MYB86, Os2R_MYB86, 2R_MYB86 ,R2R3-MYB, Os2R_MYB73 ,OsWRKY36, WRKY36, OsSGSD3,,,,OsbHLH090,OsbHLH086, TA1,OsbHLH066,OsbHLH085, DLN227, OsDLN227,OsbHLH020, bHLH020, bHLH20,OsbHLH091, bHLH091,OsbHLH064,OsDOS, OsC3H2, C3H2, OsTZF2, OsCCCH-Zn-4,OsWRKY121,OsbHLH047, bHLH047,OsERF#033, OsERF033, OsERF33, AP2/EREBP#040, AP2/EREBP40, OsDREB4-2,OsbHLH109, bHLH109,OsDLN17,Orysa;E2F1, OsE2F1, DLN58, OsDLN58, OsE2Fa-1, E2Fa-1,OsBBX13, BBX13, OsRIP1, RIP1,Lip19, lip19, OsLIP9, OsbZIP38, bZIP38,OsbHLH060, bHLH060, bHLH60, OsPRI1, PRI1, OsbHLH115, bHLH115,OsSAP16, ZOS7-05, OsZOS7-05,OsRAI1, OsbHLH003, bHLH003, bHLH3,OsbHLH025, bHLH025, bHLH25,OsWRKY19,OsWRKY67,OsJAZ9, OsJAZ 3, OsJAZ3, JAZ9, JAZ3, OsTIFY6a,OsBBX6,OsbZIP42, OsABF7, ABF7, HBF1, DLN149, OsDLN149,OsDrAp1, DrAp1,Os2R_MYB2,OsbHLH031, bHLH031, bHLH31, BIM2, OsBIM2,ZFP36, OsZFP36, OsBSRD1, Bsr-d1, BSR-D1, DLN91, OsDLN91,OsC3H32,OsZFP182,  ZOS3-21, OsZOS3-21, ZOS3, OsZOS3,OsbHLH044, bHLH044, bHLH44, OsbHLH96, bHLH96, bHLH096,OsbHLH148, bHLH148,OsHMGB707,R2R3-MYB, OsMYB55/61-L,  MYB55/61-L,  OsMYB55,  OsMYB61-L, MYB55,  MYB61-L, OsMYB61L, MYB61L, OsMYB61b, MYB61b, Os2R_MYB53, 2R_MYB53, OsMYB2P-1, MYB2P-1,OsBBX4, BBX4, OsSTH, STH, OsRNG1,OsPLT2, AP2/EREBP#060, AP2/EREBP60, HL6, OsHL6,OsbHLH083, bHLH083, CRPG311, OsCRPG311,AP2/EREBP#109, AP2/EREBP109, OsAP2/EREBP109, OsLFS,OsERF#050, OsERF050, OsERF50, AP2/EREBP#113, AP2/EREBP113, OsDREB6, OsERF60, ERF60,OsBrd2, Brd2,OsWRKY69,OsbZIP63, rTGA2.1, OsrTGA2.1, OsbZIP20, bZIP20,Edf ,OsbHLH125, bHLH125, OsRSL1, RSL1 ,OsbHLH089, bHLH089, bHLH89,OsEIL2,HSfB1, OsHsfB1, OsHsf-23, HSF23, OsHsf23, OsHSF23, TBF1 ,OsbHLH059, bHLH059, OsbHLH59, bHLH59, OsPRI3, PRI3,OsWRKY87, OsSUSIBA2-like,ZFP 15, OsZFP15,OsbHLH001, bHLH001, OsbHLH1, bHLH1, OsICE2,OsbHLH1, bHLH1, OsbHLH062, bHLH062, bHLH62 ,WZF1, OsWZF1, DLN99, OsDLN99, OsZFP1, ZFP1,OsWRKY51,OsWRKY47,OsbHLH098, bHLH098, bHLH98, OsbHLH98,OsWRKY72, WRKY-72,OsARID1,Ehd3, OsPHD36, PHD36,OsWRKY10,OsWRKY11, Dlf1, OsWRKY11.1, OsWRKY11.2
32972	21510855	Yuan,M., Li,X., Xiao,J. and Wang,S.	Molecular and functional analyses of COPT/Ctr-type copper transporter-like gene family in rice	BMC Plant Biol	11(1)	69	2011	COPT5,COPT2,COPT3,COPT4,COPT6,COPT7,COPT1	OsCOPT5,COPT2, OsCOPT2,COPT3, OsCOPT3,COPT4, OsCOPT4,COPT6, OsCOPT6,OsCOPT7,OsCOPT1
32973	21118257	Zhai,C., Lin,F., Dong,Z., He,X., Yuan,B., Zeng,X., Wang,L. and Pan,Q.	The isolation and characterization of Pik, a rice blast resistance gene which emerged after rice domestication	New Phytol.	189(1)	321-334	2011	PIK	Pik, RMg8, Pi-k, Pik-2, Pik-1, Pik1, Pik2, Pik-H4, Pikp-1, Pikh-1, Pik1-H4, Pikh-2, Pik2-H4
32974	21556707	Li H. , Chen Z. , Hu M. , Wang Z. , Hua H. , Yin C. , Zeng H.	Different effects of night versus day high temperature on rice quality and accumulation profiling of rice grain proteins during grain filling.	Plant Cell Rep.	30(9)	1641-59	2011		
32975	21396108	Potnis N. , Krasileva K. , Chow V. , Almeida N.F. , Patil P.B. , Ryan R.P. , Sharlach M. , Behlau F. , Dow J.M. , Momol M. , White F.F. , Preston J.F. , Vinatzer B.A. , Koebnik R. , Setubal J.C. , Norman D.J. , Staskawicz B.J. , Jones J.B.	Comparative genomics reveals diversity among xanthomonads infecting tomato and pepper.	BMC Genomics	12	146	2011		
32976	21708230	Li K. , Xu C. , Zhang J.	Proteome profile of maize (Zea Mays L.) leaf tissue at the flowering stage after long-term adjustment to rice black-streaked dwarf virus infection.	Gene	485(2)	106-13	2011		
32977	21655270	Angel R. , Matthies D. , Conrad R.	Activation of methanogenesis in arid biological soil crusts despite the presence of oxygen.	PLoS One	6(5)	e20453	2011		
32978	21683881	Okamura M. , Aoki N. , Hirose T. , Yonekura M. , Ohto C. , Ohsugi R.	Tissue specificity and diurnal change in gene expression of the sucrose phosphate synthase gene family in rice.	Plant Sci.	181(2)	159-66	2011		
32979	21335436	Kajala K. , Covshoff S. , Karki S. , Woodfield H. , Tolley B.J. , Dionora M.J. , Mogul R.T. , Mabilangan A.E. , Danila F.R. , Hibberd J.M. , Quick W.P.	Strategies for engineering a two-celled C4 photosynthetic pathway into rice.	J. Exp. Bot.	62(9)	3001-10	2011		
32980	21127026	Ueno D. , Koyama E. , Yamaji N. , Ma J.F.	Physiological, genetic, and molecular characterization of a high-Cd-accumulating rice cultivar, Jarjan.	J. Exp. Bot.	62(7)	2265-72	2011	GCC7	HMA3, OsHMA3, OsHMA3a, OsHMA3n, osHMA3, OsHMP34, HMP34
32981	21153026	Hu T. , He S. , Yang G. , Zeng H. , Wang G. , Chen Z. , Huang X.	Isolation and characterization of a rice glutathione S-transferase gene promoter regulated by herbicides and hormones.	Plant Cell Rep.	30(4)	539-49	2011	GSTU4,RPP31,GSTU3,GSTL1,GSTL2	OsGSTU4, GST4,OsRPP31, OsGSTF6, GSTF6,OsGSTU3, OsGSTU29, GSTU29,OsGSTL1, GST1,OsGSTL2, GSTZ5, OsGSTZ5
32982	21539752	Lackner G. , Moebius N. , Partida-Martinez LP. , Boland S. , Hertweck C.	Evolution of an endofungal Lifestyle: Deductions from the Burkholderia rhizoxinica Genome.	BMC Genomics	12	210	2011		
32983	21478444	Rautengarten C. , Ebert B. , Herter T. , Petzold C.J. , Ishii T. , Mukhopadhyay A. , Usadel B. , Scheller H.V.	The interconversion of UDP-arabinopyranose and UDP-arabinofuranose is indispensable for plant development in Arabidopsis.	Plant Cell	23(4)	1373-90	2011		
32984	21538101	Ganguly M. , Roychoudhury A. , Sarkar S.N. , Sengupta D.N. , Datta S.K. , Datta K.	Inducibility of three salinity/abscisic acid-regulated promoters in transgenic rice with gusA reporter gene.	Plant Cell Rep.	30(9)	1617-25	2011		
32985	21495624	Sturms R. , DiSpirito A.A. , Hargrove M.S.	Plant and cyanobacterial hemoglobins reduce nitrite to nitric oxide under anoxic conditions.	Biochemistry	50(19)	3873- 8	2011		
32986	21063744	Kurusu T. , Hamada H. , Sugiyama Y. , Yagala T. , Kadota Y. , Furuichi T. , Hayashi T. , Umemura K. , Komatsu S. , Miyao A. , Hirochika H. , Kuchitsu K.	Negative feedback regulation of microbe-associated molecular pattern-induced cytosolic Ca2+ transients by protein phosphorylation.	J. Plant Res.	124(3)	415-24	2011		
32987	21414773	Zeng G. , Yu Z. , Chen Y. , Zhang J. , Li H. , Yu M. , Zhao M.	Response of compost maturity and microbial community composition to pentachlorophenol (PCP)-contaminated soil during composting.	Bioresource technology	102(10)	5905-11	2011		
32988	21625436	Yang Q. , He H. , Li H. , Tian H. , Zhang J. , Zhai L. , Chen J. , Wu H. , Yi G. , He Z.H. , Peng X.	NOA1 Functions in a Temperature-Dependent Manner to Regulate Chlorophyll Biosynthesis and Rubisco Formation in Rice.	PLoS One	6(5)	e20015	2011	FGL,_,PORA,NOA1,_,RBCL	fgl(fl), fl, fgl, OsFGL, OsPorB, PoPA, PORA, porA, OsPORA, PORB, OsPORB,OsRALyase, OsFbox090, OsFbox90, Os_F0337,  OsFBO11, FBO11,OsPorA, OsPORA,OsNOA1,OsPuf4,rbcL, rbcA, OsrbcL
32989	21585388	Wathugala D.L. , Richards S.A. , Knight H. , Knight M.R.	OsSFR6 is a functional rice orthologue of SENSITIVE TO FREEZING-6 and can act as a regulator of COR gene expression, osmotic stress and freezing tolerance in Arabidopsis.	New Phytol.	191(4)	984-95	2011	SFR6	OsMed16_1, Med16_1, OsSFR6, OsMED16, MED16
32990	21516334	Lu S. , Friesen T.L. , Faris J.D.	Molecular characterization and genomic mapping of the pathogenesis-related protein 1 (PR-1) gene family in hexaploid wheat (Triticum aestivum L.).	Mol. Genet. Genomics	285(6)	485-503	2011		
32991	21332845	Seo J.S. , Joo J. , Kim M.J. , Kim Y.K. , Nahm B.H. , Song S.I. , Cheong J.J. , Lee J.S. , Kim J.K. , Choi Y.D.	OsbHLH148, a basic helix-loop-helix protein, interacts with OsJAZ proteins in a jasmonate signaling pathway leading to drought tolerance in rice.	Plant J.	65(6)	907-21	2011	TIFY11A,ERF101,BHLH148,TIFY11C,TIFY11B,COI1,TIFY11D,TIFY10A,TIFY9,ERF91,_,TIFY10C,DREB1A,DREB1B,TIFY8,DREB1E,DREB1G,DREB1C,USPA,TIFY10B,TIFY6A,EG2,TIFY6B	OsJAZ3, JAZ3, OsJAZ 9, OsJAZ9, Os-JAZ9, JAZ9, OsTIFY11a, OsJAZ6, JAZ6,OsERF#101, OsERF101, OsDERF6, DERF6, AP2/EREBP#089, AP2/EREBP89, OsRap2.6, Rap2.6, ERF113, OsERF113, OsERF101/OsRAP2.6,OsbHLH148, bHLH148,OsJAZ2, JAZ2, OsJAZ 11, OsJAZ11, Os-JAZ11, JAZ11, OsTIFY11c, OsJAZ1, JAZ1,OsJAZ4, JAZ4, OsJAZ 10, OsJAZ10, JAZ10, OsTIFY11b,OsCOI1a, OsCOI1, Os_F0728, COI1a, F0728,  OsFBL4, FBL4,OsTIFY11d, OsJAZ1, JAZ1, OsJAZ 12, OsJAZ12, JAZ12,OsJAZ5, JAZ5, JAZ6, OsJAZ6, OsTIFY10A,OsJAZ11, OsJAZ5, OsTIFY9, JAZ11, JAZ5, JAZ11/TIFY9 ,OsERF#091, OsERF091, OsERF91, AP59, OsAP59, AP2/EREBP#147, AP2/EREBP147, OsBIERF3, BIERF3,OsbHLH1,OsJAZ7, JAZ7, OsJAZ 8, OsJAZ8, Os-JAZ8, JAZ8, OsTIFY10c, OsTIFY10c/OsJAZ8,OsDREB1A, Os DREB1A, CBF3, OsCBF3, OsDREB1A/OsCBF3, ERF24, OsERF24, OsERF024, OsERF#024, AP2/EREBP#114, AP2/EREBP114, OsDREBL,OsDREB1B, ERF31, OsERF031, OsERF#031, OsERF31, AP2/EREBP#169, AP2/EREBP169, OsDREB1b, OsDREB1C, OsCBF1, CBF1,OsJAZ12, OsTIFY8, OsSTA75,OsDREB1E, OsERF030, OsERF#030, OsERF30, ERF30, AP2/EREBP#160, AP2/EREBP160, OsDREB1-1,OsDREB1G, OsERF025, OsERF#025, OsERF25, ERF25, AP2/EREBP#138, AP2/EREBP138, OsDREB1I,OsDREB1C, CBF1, ERF26, OsERF026, OsERF#026, OsERF26, AP2/EREBP#098, AP2/EREBP98, OsCBF2, CBF2,UspA, OsUspA, OsUSP23, USP23,OsJAZ6, OsJAZ 7, OsJAZ7, OsTIFY10B, JAZ6, JAZ7,OsJAZ9, OsJAZ 3, OsJAZ3, JAZ9, JAZ3, OsTIFY6a,OsTIFY3, OsJAZ10, OsJAZ 1, OsJAZ1, JAZ1, EG2/OsJAZ1, EG2, JAZ1/EG2,OsJAZ8, JAZ8, OsJAZ 4, OsJAZ4, JAZ4, OsTIFY6b, OsJAZ4-2, JAZ4-2. OsJAZ3, JAZ3
32992	21249367	Li W. , Zhou F. , Liu B. , Feng D. , He Y. , Qi K. , Wang H. , Wang J.	Comparative characterization, expression pattern and function analysis of the 12-oxo-phytodienoic acid reductase gene family in rice.	Plant Cell Rep.	30(6)	981-95	2011	OPR1,OPR3,OPR13,OPR12,OPR6,OPR10,OPR9,OPR5,OPR11,OPR4,OPR2,OPR8	OsOPR1, OsOPR2, OsOPR11, OsOPR06-6, OPDAR1, OsOPR, OPDAR,OsOPR3, OsOPR06-4,OsOPR13, OsOPR04-3,OsOPR12, OsOPR04-2,OsOPR6, OsOPR4, OsOPR06-1,OsOPR10, OsOPR12, OsOPR01-1,OsOPR9, OsOPR01-2, OPR2,OsOPR5, OsOPR6, OsOPR06-2, OPR4,OsOPR11, OsOPR04-1,OsOPR4, OsOPR10, OsOPR06-3, OsOPR7,OsOPR2, OsOPR06-5,OsOPR8, OsOPR7, OsOPR02-1
32993	20955180	Dubouzet J.G. , Maeda S. , Sugano S. , Ohtake M. , Hayashi N. , Ichikawa T. , Kondou Y. , Kuroda H. , Horii Y. , Matsui M. , Oda K. , Hirochika H. , Takatsuji H. , Mori M.	Screening for resistance against Pseudomonas syringae in rice-FOX Arabidopsis lines identified a putative receptor-like cytoplasmic kinase gene that confers resistance to major bacterial and fungal pathogens in Arabidopsis and rice.	Plant Biotechnol J.	9(4)	466-85	2011	BSR1	OsRLCK278, RLCK278, PTK15, OsPTK15
32994	21390234	Yu H. , Xie W. , Wang J. , Xing Y. , Xu C. , Li X. , Xiao J. , Zhang Q.	Gains in QTL detection using an ultra-high density SNP map based on population sequencing relative to traditional RFLP/SSR markers.	PLoS One	6(3)	e17595	2011		
32995	21444646	Li H. , Liang W. , Yin C. , Zhu L. , Zhang D.	Genetic interaction of OsMADS3, DROOPING LEAF, and OsMADS13 in specifying rice floral organ identities and meristem determinacy.	Plant Physiol.	156(1)	263-74	2011	DL,MADS13	OsDL, dl(lop), lop, dl, dl1, OsDRPq3, DRPq3,OsMADS13, MAF1, RMADS206
32996	21679437	Mallikarjuna Swamy BP. , Vikram P. , Dixit S. , Ahmed H.U. , Kumar A.	Meta-analysis of grain yield QTL identified during agricultural drought in grasses showed consensus.	BMC Genomics	12	319	2011		
32997	21571948	Izawa T. , Mihara M. , Suzuki Y. , Gupta M. , Itoh H. , Nagano A.J. , Motoyama R. , Sawada Y. , Yano M. , Hirai M.Y. , Makino A. , Nagamura Y.	Os-GIGANTEA Confers Robust Diurnal Rhythms on the Global Transcriptome of Rice in the Field.	Plant Cell	23(5)	1741-55	2011	SE1,HD3A,HD2,PRR59,PRR73,TOC1,GI,LHY,PRR95,SE5	Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, OsHd1,  Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,Hd2(t), Hd2, qHD2(t), OsPRR37, Os-PRR37, PRR37, Prr4, OsPRR4, DTH7, Os DTH7, OsCCT28, CCT28, Ghd7.1, PRR37/Hd2, EH7-2, EH7-2/Hd2, Hd2/PRR37, PRR37-1a, PRR37-1b, PRR37-1c, PRR37-2a, PRR37- 2, HD7.2,OsPRR59, Os-PRR59, Prr5, OsPRR5, OsCCT38, CCT38,OsPRR73, Os-PRR73, Prr3, OsPRR3, OsRRA20, OsCCT11, CCT11,OsTOC1, OsPRR1, Os-PRR1, PRR1, OsRRA21, OsCCT07,OsGI, Gi, Os-GI,LHY, Os-LHY, OsLHY,OsPRR95, Os-PRR95, Prr2, OsPRR2, OsCCT33,Se5, OsHO1, OsHO-1, OsHY1, HO-1, HO1, OsSE5, YGL2, YGL2/HO1
32998	21443693	Du H. , Ouyang Y. , Zhang C. , Zhang Q.	Complex evolution of S5, a major reproductive barrier regulator, in the cultivated rice Oryza sativa and its wild relatives.	New Phytol.	191(1)	275-87	2011	S5	S5-3, S5-4
32999	21687735	Ku L. , Wei X. , Zhang S. , Zhang J. , Guo S. , Chen Y.	Cloning and Characterization of a Putative TAC1 Ortholog Associated with Leaf Angle in Maize (Zea mays L.).	PLoS One	6(6)	e20621	2011	SPK	Spk(t), Spk(t)*), Spk, OsTAC1, TAC1, qTAC9 
33000	21715673	Wu Z. , Ren H. , McGrath S.P. , Wu P. , Zhao F.J.	Investigating the Contribution of the Phosphate Transport Pathway to Arsenic Accumulation in Rice.	Plant Physiol.	157(1)	498-508	2011	PT8,PHR2,PHF1	OsPT8, PHT1-8, OsPht1;8, Pht1;8, PHT1;8, OsPHT1;8,OsPHR2, Os-PHR2,OsPHF1, OsWD40-137, OsSEC12
33001	21497711	Huang J. , Che S. , Jin L. , Qin F. , Wang G. , Ma N.	The physiological mechanism of a drooping leaf2 mutation in rice.	Plant Sci.	180(6)	757-65	2011		
33002	21683590	Huang Y.C. , Chen Y.F. , Chen C.Y. , Chen W.L. , Ciou Y.P. , Liu W.H. , Yang C.H.	Production of ferulic acid from lignocellulolytic agricultural biomass by Thermobifida fusca thermostable esterase produced in Yarrowia lipolytica transformant.	Bioresource technology	102(17)	8117-22	2011		
33003	21459770	Zhu G. , Ye N. , Yang J. , Peng X. , Zhang J.	Regulation of expression of starch synthesis genes by ethylene and ABA in relation to the development of rice inferior and superior spikelets.	J. Exp. Bot.	62(11)	3907-16	2011		
33004	21625508	Li G. , Zhou X. , Kong L. , Wang Y. , Zhang H. , Zhu H. , Mitchell T.K. , Dean R.A. , Xu J.R.	MoSfl1 Is Important for Virulence and Heat Tolerance in Magnaporthe oryzae.	PLoS One	6(5)	e19951	2011		
33005	21710178	Fujino K. , Sekiguchi H.	Transposition behavior of nonautonomous a hAT superfamily transposon nDart in rice (Oryza sativa L.).	Mol. Genet. Genomics	286(2)	135-42	2011		
33006	21128943	Meng W. , Su Y.C. , Saunders R.M. , Chye M.L.	The rice acyl-CoA-binding protein gene family: phylogeny, expression and functional analysis.	New Phytol.	189(4)	1170-84	2011	ACBP2,ACBP1,ACBP5,ACBP4,ACBP3,ACBP6	OsACBP2,OsACBP1,OsACBP5,OsACBP4,OsACBP3,OsACBP6
33008	20955181	Luan W. , Liu Y. , Zhang F. , Song Y. , Wang Z. , Peng Y. , Sun Z.	OsCD1 encodes a putative member of the cellulose synthase-like D sub-family and is essential for rice plant architecture and growth.	Plant Biotechnol J.	9(4)	513-24	2011	CSLD1,ND1	csld1, OsCSLD1, OsCslD1,CSLD4, OsCSLD4, OsCD1, CD1, DNL3, OsDNL3, NRL1, OsNRL1, SPO1, OsSPO1, SPO1/OsCSLD4
33009	21624033	Kurai T. , Wakayama M. , Abiko T. , Yanagisawa S. , Aoki N. , Ohsugi R.	Introduction of the ZmDof1 gene into rice enhances carbon and nitrogen assimilation under low-nitrogen conditions.	Plant Biotechnol J.	9(8)	826-37	2011		
33010	21698458	Li H.W. , Zang B.S. , Deng X.W. , Wang X.P.	Overexpression of the trehalose-6-phosphate synthase gene OsTPS1 enhances abiotic stress tolerance in rice.	Planta.	234(5)	1007-1018	2011	TPP1,WSI18,CRP,LEA14,HSP70,TPS1,TRE1,TPP2,ELIP,RAB16C,DHN6	OsTPP1, OsTPS, TPP,OsLEA14, OsLEA14a, OsLEA14b, wsi18, pwsi18, OsWsi18, OsLEA14/WSI18,OsFTL14, FTL14,Lea14A, OsLEA5, OsEnS-2,OsHSP70, OsEnS-45, EnS-45,OsTPS1,OsTRE, OsTRE1, TRE,OsTPP2,OsELIP,rab21, OsLEA27, rab16C, OsRAB16C, DHD,OsLEA25, LEA25, OsEnS-143, OsRAB21, RAB21, Rab17, OsRab17
33011	21082325	Zhao Z.G. , Zhu S.S. , Zhang Y.H. , Bian X.F. , Wang Y. , Jiang L. , Liu X. , Chen L.M. , Liu S.J. , Zhang W.W. , Ikehashi H. , Wan J.M.	Molecular analysis of an additional case of hybrid sterility in rice (Oryza sativa L.).	Planta.	233(3)	485-94	2011	F5,S24	f5, f5-Du, Sb, S24,S24(t), S24(t)*, Sb, F5-Du
33012	21543899	Engstrom E.M.	Phylogenetic analysis of GRAS proteins from moss, lycophyte and vascular plant lineages reveals that GRAS genes arose and underwent substantial diversification in the ancestral lineage common to bryophytes and vascular plants	Plant Signal Behav	6(6)	850-4	2011		
33013	21594748	Okrent R.A. , Wildermuth M.C.	Evolutionary history of the GH3 family of acyl adenylases in rosids.	Plant Mol. Biol.	76(6)	489-505	2011		
33014	21492454	Venu R. , Sreerekha M. , Nobuta K. , Bel? A. , Ning Y. , An G. , Meyers B.C. , Wang G.L.	Deep sequencing reveals the complex and coordinated transcriptional regulation of genes related to grain quality in rice cultivars.	BMC Genomics	12	190	2011		
33015	21615569	Wang M. , Tang D. , Wang K. , Shen Y. , Qin B. , Miao C. , Li M. , Cheng Z.	OsSGO1 maintains synaptonemal complex stabilization in addition to protecting centromeric cohesion during rice meiosis.	Plant J.	67(4)	583-94	2011	SGO2,SGO1,RAD21-4,PAIR2,RMC1,ZEP1,CENH3,AM1	OsSGO2,OsSGO1,OsRad21-4, REC8, OsREC8, OsRAD21-4,Pair2, OsPAIR2, OsASY1,MER3, mer3, OsMER3, RCK, OsRCK, Os-MER3,OsZEP1,OsCENH3, CenH3,OsAM1, SWI1, Osam1
33016	21457373	Zhang Y. , Zhang B. , Yan D. , Dong W. , Yang W. , Li Q. , Zeng L. , Wang J. , Wang L. , Hicks L.M. , He Z.	Two Arabidopsis cytochrome P450 monooxygenases, CYP714A1 and CYP714A2, function redundantly in plant development through gibberellin deactivation.	Plant J.	67(2)	342-53	2011		
33017	21459832	Xue G.P. , Way H.M. , Richardson T. , Drenth J. , Joyce P.A. , McIntyre C.L.	Overexpression of TaNAC69 Leads to Enhanced Transcript Levels of Stress Up-Regulated Genes and Dehydration Tolerance in Bread Wheat.	Mol Plant	4(4)	697-712	2011		
33018	21619871	Wakuta S. , Suzuki E. , Saburi W. , Matsuura H. , Nabeta K. , Imai R. , Matsui H.	OsJAR1 and OsJAR2 are jasmonyl-l-isoleucine synthases involved in wound- and pathogen-induced jasmonic acid signalling.	Biochem. Biophys. Res. Commun. 	409(4)	634-9	2011	JAR3,JAR1,JAR2	OsJAR3, OsGH3.12, GH3.12, OsGH3-12, GH3-12,OsJAR1, OsGH3.5, GH3.5, OsGH3-5, GH3-5,OsJAR2, OsGH3.3, GH3.3, OsGH3-3, JAR2/GH3-3, GH3-3, OsGH3.3/OsJAR2
33019	21418352	Tang J. , Zhu X. , Wang Y. , Liu L. , Xu B. , Li F. , Fang J. , Chu C.	Semi-dominant mutations in the CC-NB-LRR-type R gene, NLS1, lead to constitutive activation of defense responses in rice.	Plant J.	66(6)	996-1007	2011	NLS1,PR5,PR10A,PR1B,PR1A	OsNLS1,OsPR5, Pir2, PR-5, PR5-1,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1, OsPR1a, PR1a,OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1, OsPR1b, PR1alpha, OsPR1alpha
33020	21406116	Wang D. , Pan Y. , Zhao X. , Zhu L. , Fu B. , Li Z.	Genome-wide temporal-spatial gene expression profiling of drought responsiveness in rice.	BMC Genomics	12	149	2011		
33021	21546455	Yang X. , Yang Y.N. , Xue L.J. , Zou M.J. , Liu J.Y. , Chen F. , Xue H.W.	Rice ABI5-Like1 Regulates Abscisic Acid and Auxin Responses by Affecting the Expression of ABRE-Containing Genes.	Plant Physiol.	156(3)	1397-409	2011	BZIP46	ABL1, bZIP46, OsABL1, OsbZIP46, OsAREB8, OsABF2, ABF2, OsABF3, ABF3, OsbZIP46CA1, OsZIP46, ZIP46, OsbZIP46/OsABF2
33022	21424397	Costanzo S. , Jackson A.K. , Brooks S.A.	High-resolution mapping of Rsn1, a locus controlling sensitivity of rice to a necrosis-inducing phytotoxin from Rhizoctonia solani AG1-IA.	Theor. Appl. Genet.	123(1)	33-41	2011	RSN1	Rsn1
33023	21512773	Li M. , Sun P. , Zhou H. , Chen S. , Yu S.	Identification of quantitative trait loci associated with germination using chromosome segment substitution lines of rice (Oryza sativa L.).	Theor. Appl. Genet.	123(3)	411-20	2011		
33024	21409497	Kuwano M. , Masumura T. , Yoshida K.T.	A novel endosperm transfer cell-containing region-specific gene and its promoter in rice.	Plant Mol. Biol.	76(12)	47-56	2011		
33025	21683874	Ito Y. , Thirumurugan T. , Serizawa A. , Hiratsu K. , Ohme-Takagi M. , Kurata N.	Aberrant vegetative and reproductive development by overexpression and lethality by silencing of OsHAP3E in rice.	Plant Sci.	181(2)	105-10	2011	LEC1	OsHAP3E, HAP3E, OsLEC1/OsHAP3E, OsLEC1, LEC1, OsNF-YB7, NF-YB7, NFYB7, L1L 
33026	21640170	Song J. , Guo B. , Song F. , Peng H. , Yao Y. , Zhang Y. , Sun Q. , Ni Z.	Genome-wide identification of gibberellins metabolic enzyme genes and expression profiling analysis during seed germination in maize.	Gene	482(12)	34-42	2011		
33027	21203887	Sato Y. , Masuta Y. , Saito K. , Murayama S. , Ozawa K.	Enhanced chilling tolerance at the booting stage in rice by transgenic overexpression of the ascorbate peroxidase gene, OsAPXa.	Plant Cell Rep.	30(3)	399-406	2011		
33028	21565907	Endo-Higashi N. , Izawa T.	Flowering Time Genes Heading date 1 and Early heading date 1 Together Control Panicle Development in Rice.	Plant Cell Physiol.	52(6)	1083-94	2011	EF1,SE1,RFT1	Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, OsHd1,  Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,FT-L 3, OsFTL3, FTL3, FT-L3, RFT, OsRFT1
33029	21208999	Yuan T. , Li X. , Xiao J. , Wang S.	Characterization of Xanthomonas oryzae-responsive cis-acting element in the promoter of rice race-specific susceptibility gene Xa13.	Mol Plant	4(2)	300-9	2011	XA13	xa13, Xa13, Os8N3, Os-8N3, 8N3, OsSWEET11, SWEET11, OsSWEET11/Xa13, Xa13/Os8N3/SWEET11, Os8N3/Xa13, OsSWEET11/Os8N3, OsSWEET11a, SWEET11a
33030	21681490	Ding X. , Li X. , Xiong L.	Evaluation of near-isogenic lines for drought resistance QTL and fine mapping of a locus affecting flag leaf width, spikelet number, and root volume in rice.	Theor. Appl. Genet.	123(5)	815-26	2011		
33031	21551159	Yun M.S. , Umemoto T. , Kawagoe Y.	Rice debranching enzyme isoamylase3 facilitates starch metabolism and affects plastid morphogenesis.	Plant Cell Physiol.	52(6)	1068-82	2011	SSIVB,ISA3,PHS8,_,FTSZ1,ARC5	OsSSIVb, SSIV-2, OsSSIV-2, SSIVb, SSIV-2, SSIV2, OsSSIV2,OsISA3,ISA1, OsISA1, ISA, OsISA, PHS8/ISA1, OsPHS8, ISA I, OsISA I, ISAI, OsISAI,FtsZ2-1,FtsZ1, FtsZ, OsFtsZ1, OsFtsZ,OsARC5, Os ARC5, OsDRP5B, DRP5B
33032	21613379	Cao H. , Guo S. , Xu Y. , Jiang K. , Jones A.M. , Chong K.	Reduced expression of a gene encoding a Golgi localized monosaccharide transporter (OsGMST1) confers hypersensitivity to salt in rice (Oryza sativa).	J. Exp. Bot.		-	2011	GMST1	OsGMST1, OspGlcT2, pGlcT2
33033	21576467	Danna C.H. , Millet Y.A. , Koller T. , Han S.W. , Bent A.F. , Ronald P.C. , Ausubel F.M.	The Arabidopsis flagellin receptor FLS2 mediates the perception of Xanthomonas Ax21 secreted peptides.	Proc. Natl. Acad. Sci. U.S.A.	108(22)	9286-91	2011		
33034	21543724	Ochiai K. , Shimizu A. , Okumoto Y. , Fujiwara T. , Matoh T.	Suppression of a NAC-Like Transcription Factor Gene Improves Boron-Toxicity Tolerance in Rice.	Plant Physiol.	156(3)	1457-63	2011	BET1	BET1, ONAC081, ONAC81, NAC81
33035	21534973	Giri J. , Vij S. , Dansana P.K. , Tyagi A.K.	Rice A20/AN1 zinc-finger containing stress-associated proteins (SAP1/11) and a receptor-like cytoplasmic kinase (OsRLCK253) interact via A20 zinc-finger and confer abiotic stress tolerance in transgenic Arabidopsis plants.	New Phytol.	191(3)	721-32	2011		
33036	21383162	Zhang B. , Liu X. , Qian Q. , Liu L. , Dong G. , Xiong G. , Zeng D. , Zhou Y.	Golgi nucleotide sugar transporter modulates cell wall biosynthesis and plant growth in rice.	Proc. Natl. Acad. Sci. U.S.A.	108(12)	5110-5	2011	BC14	OsBC14, OsNST1, NST1
33037	21371040	Maathuis F.J.	Vacuolar two-pore K(+) channels act as vacuolar osmosensors.	New Phytol.	191(1)	84-91	2011		
33038	21646530	Asano K. , Yamasaki M. , Takuno S. , Miura K. , Katagiri S. , Ito T. , Doi K. , Wu J. , Ebana K. , Matsumoto T. , Innan H. , Kitano H. , Ashikari M. , Matsuoka M.	From the Cover: Artificial selection for a green revolution gene during japonica rice domestication.	Proc. Natl. Acad. Sci. U.S.A.	108(27)	11034-9	2011	SD1	sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2, OsPHQ1, OsPHq1, PHq1
33039	21322560	Chuang H.H. , Chen P.T. , Wang W.N. , Chen Y.T. , Shaw J.F.	Functional proteomic analysis of rice bran esterases/lipases and characterization of a novel recombinant esterase.	J. Agric. Food Chem. 	59(5)	2019-25	2011		
33040	21711449	Gao Z. , Zeng D. , Cheng F. , Tian Z. , Guo L. , Su Y. , Yan M. , Jiang H. , Dong G. , Huang Y. , Han B. , Li J. , Qian Q.	ALK, The Key Gene for Gelatinization Temperature, is a Modifier Gene for Gel Consistency in Rice (Oryza sativa L.).	J. Integr. Plant Biol.	53(9)	756-65	2011		
33041	21473768	Xing H. , Pudake R.N. , Guo G. , Xing G. , Hu Z. , Zhang Y. , Sun Q. , Ni Z.	Genome-wide identification and expression profiling of auxin response factor (ARF) gene family in maize.	BMC Genomics	12	178	2011		
33042	21562335	Ishikawa C. , Hatanaka T. , Misoo S. , Miyake C. , Fukayama H.	Functional incorporation of sorghum small subunit increases the catalytic turnover rate of rubisco in transgenic rice.	Plant Physiol.	156(3)	1603-11	2011		
33043	21511810	Qin B.X. , Tang D. , Huang J. , Li M. , Wu X.R. , Lu L.L. , Wang K.J. , Yu H.X. , Chen J.M. , Gu M.H. , Cheng Z.K.	Rice OsGL1-1 Is Involved in Leaf Cuticular Wax and Cuticle Membrane.	Mol Plant	4(6)	985-995	2011	WSL2	OsGL1-1, WSL2
33044	21715672	Nahar K. , Kyndt T. , de Vleesschauwer D. , Hofte M.M. , Gheysen G.	The jasmonate pathway is a key player in systemically induced defense against root knot nematodes in rice.	Plant Physiol.	157(1)	305-16	2011		
33045	21697258	Takahashi R. , Ishimaru Y. , Senoura T. , Shimo H. , Ishikawa S. , Arao T. , Nakanishi H. , Nishizawa N.K.	The OsNRAMP1 iron transporter is involved in Cd accumulation in rice.	J. Exp. Bot.		-	2011	LCD1,NRAMP2,NRAMP4,NRAMP3,NRAMP7,NRAMP6,NRAMP1	NRAMP5, OsNRAMP5, OsNramp5, OsLCD1,OsNramp2, OsNRAMP2,OsNRAMP4, Nrat1, Nramp6, OsNRAT1, NRAT1, FCO5,OsNramp3, OsNRAMP3,OsNRAMP7,OsNRAMP6, Nramp6, l-NRAMP6, s-NRAMP6, OsNramp6.8, OsNramp1,OsNramp1, OsNRAMP1, OsNramp6
33046	21534595	Nie Z.J. , Hang B.J. , Cai S. , Xie X.T. , He J. , Li S.P.	Degradation of Cyhalofop-butyl (CyB) by Pseudomonas azotoformans Strain QDZ-1 and Cloning of a Novel Gene Encoding CyB-Hydrolyzing Esterase.	J. Agric. Food Chem. 	59(11)	6040-6	2011		
33047	21502188	Ji X. , Dong B. , Shiran B. , Talbot M.J. , Edlington J.E. , Hughes T. , White R.G. , Gubler F. , Dolferus R.	Control of abscisic Acid catabolism and abscisic Acid homeostasis is important for reproductive stage stress tolerance in cereals.	Plant Physiol.	156(2)	647-62	2011	CIN3,ABA8OX1,ABA1,C6,NCED2,ABA8OX3,NCED3,NCED1,ABA8OX2	OSINV4, OsINV4, INV4, OsCIN3,OsABA8OX1, CYP707A5, OsCYP707A5, ABA8ox1, OsABA8ox1, OsABA8'OH1, ABA8'OH1 ,OsABA1, Zep1, OsAba1, Aba2, OsAba2, OsZep1, Zep, OsZep, Aba1, OsABA2, Osaba1, OsZEP-1, OsZEP, OSZEP1, ZEP1, ZEP,Osc6, Osg6B, OsG6B, OsLTPG25, OsLTPg25, OsLtpVII.1, Os C6,OSNCED2, OsNCED2, OsNCED5, NCED5,OsABA8OX3, OsABA8ox3, CYP707A7, OsCYP707A7, OsAba-ox3, OsABA8ox3, OsABA8'ox3, ABA8'ox3, OsABAX3, ABAX3, OsABA8'OH3, ABA8'OH3,OSNCED3, OsNCED-3, OsNCED3, OsNCED3a, NCED3a, OsNCED4, NCED4, OsNECD2, OsNCED2b, NCED2b ,OSNCED1, OsNCED-1, OsNCED3, OsNced3, NCED3, OsNCED9, NCED9,OsABA8OX2, OsABA8ox2, CYP707A6, OsCYP707A6, OsAba-ox2, OsABA8ox2, OsABA8OH2, ABA8OH2, ABA8'-OH2, OsABA8'ox2, ABA8'ox2, OsABAX2, ABAX2, OsABA8'OH2, ABA8'OH2
33049	21502185	Jia H. , Ren H. , Gu M. , Zhao J. , Sun S. , Zhang X. , Chen J. , Wu P. , Xu G.	The Phosphate Transporter Gene OsPht1;8 Is Involved in Phosphate Homeostasis in Rice.	Plant Physiol.	156(3)	1164-75	2011	PT8	OsPT8, PHT1-8, OsPht1;8, Pht1;8, PHT1;8, OsPHT1;8
33050	21148627	Yan W.H. , Wang P. , Chen H.X. , Zhou H.J. , Li Q.P. , Wang C.R. , Ding Z.H. , Zhang Y.S. , Yu S.B. , Xing Y.Z. , Zhang Q.F.	A major QTL, Ghd8, plays pleiotropic roles in regulating grain productivity, plant height, and heading date in rice.	Mol Plant	4(2)	319-30	2011		
33051	21585570	Utsunomiya Y. , Samejima C. , Takayanagi Y. , Izawa Y. , Yoshida T. , Sawada Y. , Fujisawa Y. , Kato H. , Iwasaki Y.	Suppression of the rice heterotrimeric G?protein beta-subunit gene, RGB1, causes dwarfism and browning of internodes and lamina joint regions.	Plant J.	67(5))	907-16	2011	RGB1,D1	OsWD40-80, RGbeta1, OsRGB1,  OsDWD38, DWD38,d1, GPA1, GA1, OsGA1, RGA1, dwf1, XA7, RGA, D1/RGA1, D89, TGW5, OsTGW5, SRG5, OsSRG5
33052	21458419	Kim J.H. , Jung I.J. , Kim D.Y. , Fanata W.I. , Son B.H. , Yoo J.Y. , Harmoko R. , Ko K.S. , Moon J.C. , Jang H.H. , Kim W.Y. , Kim J.Y. , Lim C.O. , Lee S.Y. , Lee K.O.	Proteomic identification of an embryo-specific 1Cys-Prx promoter and analysis of its activity in transgenic rice.	Biochem. Biophys. Res. Commun. 	408(1)	78-83	2011		
33053	21631728	Du C. , Xu Y. , Wang Y. , Chong K.	ARF-GAP Stimulates the Transport of AUX1 Endosome, Which Relies on Actin Cytoskeletal Organization in Rice Root Development.	J. Integr. Plant Biol.	53(9)	698-709	2011	AGAP	OsAGAP, OsC2DP13, C2DP13
33055	21544623	Azria D. , Bhalla P.L.	Agrobacterium-mediated transformation of Australian rice varieties and promoter analysis of major pollen allergen gene, Ory s 1.	Plant Cell Rep.	30(9)	1673-81	2011		
33056	21499841	Gao T. , Wu Y. , Zhang Y. , Liu L. , Ning Y. , Wang D. , Tong H. , Chen S. , Chu C. , Xie Q.	OsSDIR1 overexpression greatly improves drought tolerance in transgenic rice.	Plant Mol. Biol.	76(12)	145-56	2011	_	OsSDIR1, SDIR1,  OsRING198, RING198
33057	21487048	Hu J. , Zhou J. , Peng X. , Xu H. , Liu C. , Du B. , Yuan H. , Zhu L. , He G.	The bphi008a gene interacts with the ethylene pathway and transcriptionally regulates MAPK genes in the response of rice to brown planthopper feeding.	Plant Physiol.	156(2)	856-72	2011	MSRMK2,_,_,ERF86,BWMK1,BZIP50,_,MPK17	OsMSRMK2, OsMAPK5, OsMAP1, OsMPK3, OsBIMK1, OsMAPK2, MPK5, BIMK1, MAPK2, MAPK5, MPK3, OsMPK5, OsMAPK3, OsMAPK5b, MAPK3,OsMPK13, OsMAPK2, OsBIMK2, BIMK2, MPK13, MAPK2, OsMAPK17-2, MAPK17-2,SDRP,DERF2, OsDERF2, OsERF#086, OsERF086, OsERF86, AP2/EREBP#074, AP2/EREBP74, OsERF1,OsBWMK1, MPK12, MAPK1, OsMAPK1, OsMPK12, OsMPK17-1, MPK17-1, OsBWMK1L, OsBWMK1M, OsBWMK1S, OsMAPK17-1, MAPK17-1, MAPK12, OsMAPK12,OsbZIP60, bZIP50, OsbZIP50, OsbZIP74, bZIP74, OsbZIP50-S,bphi008a, BpHi008A, OsRALF-22, OsRALF22, RALF-22, RALF22,OsMPK17, OsMPK21-1, MPK21-1
33058	21673515	Takanashi H. , Ohnishi T. , Mogi M. , Hirata Y. , Tsutsumi N.	DCL2 is highly expressed in the egg cell in both rice and Arabidopsis.	Plant Signal Behav	6(4)	604-6	2011		
33059	21637806	Shao J. , Zhang Y. , Yu J. , Guo L. , Ding Y.	Isolation of Thylakoid Membrane Complexes from Rice by a New Double-Strips BN/SDS-PAGE and Bioinformatics Prediction of Stromal Ridge Subunits Interaction.	PLoS One	6(5)	e20342	2011		
33060	21375689	Jiang H. , Chen Y. , Li M. , Xu X. , Wu G.	Overexpression of SGR results in oxidative stress and lesion-mimic cell death in rice seedlings.	J. Integr. Plant Biol.	53(5)	375-87	2011		
33061	21402917	Schmelz E.A. , Kaplan F. , Huffaker A. , Dafoe N.J. , Vaughan M.M. , Ni X. , Rocca J.R. , Alborn H.T. , Teal P.E.	Identity, regulation, and activity of inducible diterpenoid phytoalexins in maize.	Proc. Natl. Acad. Sci. U.S.A.	108(13)	5455-60	2011		
33062	21591772	Jeong J.W. , Nam P.W. , Lee S.J. , Lee K.G.	Antioxidant activities of korean rice wine concentrates.	J. Agric. Food Chem. 	59(13)	7039-44	2011		
33063	21605340	Cheng Z.J. , Mao B.G. , Gao S.W. , Zhang L. , Wang J.L. , Lei C.L. , Zhang X. , Wu F.Q. , Guo X.P. , Wan J.	Fine Mapping of?qPAA8, a Gene Controlling Panicle Apical Development in Rice.	J. Integr. Plant Biol.	53(9)	710-8	2011		
33064	21543885	Takasugi T. , Ito Y.	Altered expression of auxin-related genes in the fatty acid elongase mutant oni1 of rice.	Plant Signal Behav	6(6)	887-8	2011		
33065	21302323	Li X. , Xiong H. , Yang K. , Peng D. , Li W. , Yin Y. , Liu J.	Effects of rice dreg protein and its hydrolysate on growth performance and small intestine morphology of early-weaned rats.	J. Sci. Food Agric.	91(4)	687-93	2011		
33066	21385395	Tian Z. , Yu Y. , Lin F. , Yu Y. , Sanmiguel P.J. , Wing R.A. , McCouch S.R. , Ma J. , Jackson S.A.	Exceptional lability of a genomic complex in rice and its close relatives revealed by interspecific and intraspecific comparison and population analysis.	BMC Genomics	12	142	2011		
33067	21447055	Li M. , Tang D. , Wang K. , Wu X. , Lu L. , Yu H. , Gu M. , Yan C. , Cheng Z.	Mutations in the F-box gene LARGER PANICLE improve the panicle architecture and enhance the grain yield in rice.	Plant Biotechnol J.	9(9)	1002-1013	2011	EP3	EP3/LP, LP, OsLP, OsFbox076, OsFbox76, Os_F0106, OsEP3,  OsFBK5, FBK5
33068	21418356	Sakamoto T. , Kawabe A. , Tokida-Segawa A. , Shimizu B. , Takatsuto S. , Shimada Y. , Fujioka S. , Mizutani M.	Rice CYP734As function as multisubstrate and multifunctional enzymes in brassinosteroid catabolism.	Plant J.	67(1)	1-12	2011	CYP734A5,CYP734A2,CYP734A4,CYP734A6	,OsCYP734A2,OsCYP734A4,OsCYP734A6 
33069	21719639	Ning Y. , Jantasuriyarat C. , Zhao Q. , Zhang H. , Chen S. , Liu J. , Liu L. , Tang S. , Park C.H. , Wang X. , Liu X. , Dai L. , Xie Q. , Wang G.L.	The SINA E3 ligase OsDIS1 Negatively Regulates Drought Response in Rice.	Plant Physiol.	157(1)	242-55	2011	_,BIRF1,DIS1	OsNek6,OsBIRF1,  OsRING50, RING50,OsDIS1, RIP5, OsRIP5,  OsRING80, RING80
33070	21635585	Wu J. , Du H. , Liao X. , Zhao Y. , Li L. , Yang L.	Tn5 Transposase-assisted Transformation of Indica Rice.	Plant J.	68(1)	186-200	2011		
33071	21436381	Utsumi Y. , Utsumi C. , Sawada T. , Fujita N. , Nakamura Y.	Functional diversity of isoamylase oligomers: the ISA1 homo-oligomer is essential for amylopectin biosynthesis in rice endosperm.	Plant Physiol.	156(1)	61-77	2011	ISA2,PHS8	OsISA2, ISA II, OsISA II,ISA1, OsISA1, ISA, OsISA, PHS8/ISA1, OsPHS8, ISA I, OsISA I, ISAI, OsISAI
33072	21483860	Bi F.C. , Zhang Q.F. , Liu Z. , Fang C. , Li J. , Su J.B. , Greenberg J.T. , Wang H.B. , Yao N.	A conserved cysteine motif is critical for rice ceramide kinase activity and function.	PLoS One	6(3)	e18079	2011	_	OsCERK
33073	21512732	Ishikawa R. , Aoki M. , Kurotani K. , Yokoi S. , Shinomura T. , Takano M. , Shimamoto K.	Phytochrome B regulates Heading date 1 (Hd1)-mediated expression of rice florigen Hd3a and critical day length in rice.	Mol. Genet. Genomics	285(6)	461-70	2011	PHYB,SE1,HD3A	phyB, PHYB1, OsPHYB, OsphyB, OsYHB, YHB, OsPHYB/OsYHB,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, OsHd1,  Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a 
33074	21324061	Gan Q. , Bai H. , Zhao X. , Tao Y. , Zeng H. , Han Y. , Song W. , Zhu L. , Liu G.	Transcriptional characteristics of Xa21-mediated defense responses in rice.	J. Integr. Plant Biol.	53(4)	300-11	2011		
33075	21547461	Zhang C.Q. , Xu Y. , Lu Y. , Yu H.X. , Gu M.H. , Liu Q.Q.	The WRKY transcription factor OsWRKY78 regulates stem elongation and seed development in rice.	Planta.	234(3)	541-54	2011		
33076	21575088	Chakravorty D. , Trusov Y. , Zhang W. , Acharya B.R. , Sheahan M.B. , McCurdy D.W. , Assmann S.M. , Botella J.R.	An atypical heterotrimeric G-protein gamma-subunit is involved in guard cell K(+) -channel regulation and morphological development in Arabidopsis thaliana.	Plant J.	67(5)	840-51@	2011		
33077	21655219	Zha W. , Peng X. , Chen R. , Du B. , Zhu L. , He G.	Knockdown of Midgut Genes by dsRNA-Transgenic Plant-Mediated RNA Interference in the Hemipteran Insect Nilaparvata lugens.	PLoS One	6(5)	e20504	2011		
33078	21384112	Zhang Y.X. , Wang Q. , Jiang L. , Liu L.L. , Wang B.X. , Shen Y.Y. , Cheng X.N. , Wan J.M.	Fine mapping of qSTV11(KAS), a major QTL for rice stripe disease resistance.	Theor. Appl. Genet.	122(8)	1591-604	2011		
33079	21443626	Feller A. , Machemer K. , Braun E.L. , Grotewold E.	Evolutionary and comparative analysis of MYB and bHLH plant transcription factors.	Plant J.	66(1)	94-116	2011		
33080	21501172	Inagaki Y.S. , Etherington G. , Geisler K. , Field B. , Dokarry M. , Ikeda K. , Mutsukado Y. , Dicks J. , Osbourn A.	Investigation of the potential for triterpene synthesis in rice through genome mining and metabolic engineering.	New Phytol.	191(2)	432-48	2011	_,_,_,_,_,_,CYP51G1,CYP51G4,CYP51H1,CYP51H2,CYP51H3,CYP51H4,CYP51H7,CYP51H8,CYP51H9,_,_,_,_,CYP51H5,_,OSC4,SDF5,CYP51G3	OsOSC1,OsOSC9,OsOSC10,OsOSC12,OsOSC2, CAS1,OsOSC8,OsCYP51G1,OsCYP51G4,OsCYP51H1,OsCYP51H2,OsCYP51H3,OsCYP51H4,OsCYP51H7,OsCYP51H8,OsCYP51H9,OsOSC3,OsOSC5,OsOSC6,OsIAS, OsOSC11, IAS, OSC11,OsCYP51H5,OsOSC7, OSC7, OsPS, PS, OsOSC7/OsPS, OsOSC7i, OsOSC7j ,OsOSC4,OsCYP51H6, CYP51H6, P-450 51H6,OsCYP51G3
33081	21673510	Toriba T. , Ohmori Y. , Hirano H.Y.	Common and distinct mechanisms underlying the establishment of adaxial and abaxial polarity in stamen and leaf development.	Plant Signal Behav	6(3)	430-3	2011		
33082	21546791	Kang K. , Park S. , Kim Y.S. , Back K.	Methanol elicits the biosynthesis of 4-coumaroylserotonin and feruloylserotonin in rice seedlings.	Plant Signal Behav	6(6)	881-3	2011		
33083	21369877	Kong X.Q. , Gao X.H. , Sun W. , An J. , Zhao Y.X. , Zhang H.	Cloning and functional characterization of a cation-chloride cotransporter gene OsCCC1.	Plant Mol. Biol.	75(6)	567-78	2011	CCC1	Os CCC1, OsCCC1, OsLAT9 
33084	21705640	Tanaka N. , Itoh H. , Sentoku N. , Kojima M. , Sakakibara H. , Izawa T. , Itoh J.I. , Nagato Y.	The COP1 Ortholog PPS Regulates the Juvenile-Adult and Vegetative-Reproductive Phase Changes in Rice.	Plant Cell	23(6)	2143-54	2011	PPS	OsWD40-55, OsCOP1, COP1, YEL, OsYEL, OsPPS, COP1-1, OsCOP1-1,  OsRING347, RING347
33085	21683877	Ushijima T. , Matsusaka H. , Jikuya H. , Ogawa M. , Satoh H. , Kumamaru T.	Genetic analysis of cysteine-poor prolamin polypeptides reduced in the endosperm of the rice esp1 mutant.	Plant Sci.	181(2)	125-31	2011		
33086	21543727	Saika H. , Oikawa A. , Matsuda F. , Onodera H. , Saito K. , Toki S.	Application of gene targeting to designed mutation breeding of high-tryptophan rice.	Plant Physiol.	156(3)	1269-77	2011	ASA2	OASA2 (=ASA2), OsASA2, OASA2, ASalpha2, OsASalpha2, OASA2
33087	21448719	Song S.Y. , Chen Y. , Chen J. , Dai X.Y. , Zhang W.H.	Physiological mechanisms underlying OsNAC5-dependent tolerance of rice plants to abiotic stress.	Planta.	234(2)	331-45	2011		
33088	21209026	Kotake T. , Aohara T. , Hirano K. , Sato A. , Kaneko Y. , Tsumuraya Y. , Takatsuji H. , Kawasaki S.	Rice Brittle culm 6 encodes a dominant-negative form of CesA protein that perturbs cellulose synthesis in secondary cell walls.	J. Exp. Bot.	62(6)	2053-62	2011	CESA8,CESA3,CESA2,CESA1,CESA6,CSLC1,CESA5,CSLE1,BC6,CSLA1,CSLF1,CSLH1	OsCesA8, OsCESA8, OS_CESA08, CesA8,OsCesA3, OsCESA3, OS_CESA03,OsCesA2, OsCESA2, OS_CESA02,OsCesA1, OsCesA-1, OsCESA1, OS_CESA01, CesA1,OsCesA6, OsCESA6, OS_CESA06,OsCslC1, OsCSLC1,OsCesA5, OsCESA5, OS_CESA05,OsCslE1, OsCSLE1 ,Bc6*, Bc6, OsCesA9, CESA9, OsCESA9, OS_CESA09, OsCesA 9, CesA9, BC88, SDBC1, OsSDBC1,OsCslA1, OsCSLA1 ,OsCslF1, OsCSLF1 ,OsCslH1, OsCSLH1 
33089	21408199	Sun X. , Wang G.L.	Genome-wide identification, characterization and phylogenetic analysis of the rice LRR-kinases.	PLoS One	6(3)	e16079	2011	MSP1,HAIKU2,FON1,RLCK222,SYMRK,BRL1,RLCK24,PEPR1,SERL2,MRLK48,PSKR1,MRLK38,_,_,SGN3A,_,_,SERL5,_,FLS2,XA3,D61,RLCK204,SG2	Msp1, OsMSP1, OsTMS15, TMS15,OsHAIKU2, OsRLK7, RLK7, OsMEG1, MEG1,OsFON1, fon1, OsRLCK219, RLCK219,OsRLCK222,OsSYMRK,OsBRL1,OsRLCK24,OsPEPR1,OsSERL2, SERK1, OsBAK1-7, BAK1-7,OsMRLK48,OsPSKR1, OsPSKR10, PSKR10,OsMRLK38,,,OsSGN3a, SGN3a,,Xa21, OsXA21, OsXA21-C11, XA21-C11,OsSERL5, OsBAK1-4, OsSERK1, BAK1-4, SERK1,,Os-FLS2, OsFLS2, OsCLV2f, CLV2f,Xa-3, Xa3 (Xa4b, Xa6, Xa9, Xa w), Xa3, Xaw, Xa6, Xa9, Xa4-b, XA26, Xa26(t), Xa26(t)*, Xa26, RKb, MRKb, MRKB, TRKb, Xa3/Xa26,d61*, dwf42, d61, OsBRI1, OSBRI1, BRI1, Os BRI1, Osbri1, OsBRKq1, BRKq1,OsRLCK204, OsER1, ER1,OsSERK1, SERK1, OsBAK1, BAK1, OsSERK1/OsBAK1, OsBISERK1, BISERK1, OsSerk1, OsBAK1-1, 08SG2/OsBAK1, 08SG2, OsSG2
33090	21215616	Lou L. , Wu B. , Wang L. , Luo L. , Xu X. , Hou J. , Xun B. , Hu B. , Chen Y.	Sorption and ecotoxicity of pentachlorophenol polluted sediment amended with rice-straw derived biochar.	Bioresource technology	102(5)	4036-41	2011		
33091	21602276	Ishimaru Y. , Kakei Y. , Shimo H. , Bashir K. , Sato Y. , Sato Y. , Uozumi N. , Nakanishi H. , Nishizawa N.K.	A rice phenolic efflux transporter is essential for solubilizing precipitated apoplasmic iron in the plant stele.	J. Biol. Chem.	286(28)	24649-55	2011	PEZ2,PEZ1	OsPEZ2, OsMATE15, MATE15,OsPEZ1, OsMATE14, MATE14
33092	21426477	Lee S. , Persson D.P. , Hansen T.H. , Husted S. , Schjoerring J.K. , Kim Y.S. , Jeon U.S. , Kim Y.K. , Kakei Y. , Masuda H. , Nishizawa N.K. , An G.	Bio-available zinc in rice seeds is increased by activation tagging of nicotianamine synthase.	Plant Biotechnol J.	9(8)	865-73	2011		
33093	21481033	Kitomi Y. , Ito H. , Hobo T. , Aya K. , Kitano H. , Inukai Y.	The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.	Plant J.	67(3)	472-84	2011	RR2,PLT8,RR1,CRL1	rr2, Osrr2, OsRR2, Rra10, OsRRA10,OsPLT8, CRL5, OsCRL5, AP2/EREBP141, AP2/EREBP#141 ,rr1, OsRR1, Rra9, OsRRA9,crl1, crl1*, ARL1, ARL1/CRL1, OsLBD3-2, LBD3-2, OsCRL1
33094	21606318	Shao T. , Tang D. , Wang K. , Wang M. , Che L. , Qin B. , Yu H. , Li M. , Gu M. , Cheng Z.	OsREC8 Is Essential for Chromatid Cohesion and Metaphase I Monopolar Orientation in Rice Meiosis.	Plant Physiol.	156(3)	1386-96	2011	RAD21-4	OsRad21-4, REC8, OsREC8, OsRAD21-4
33095	21521743	Nagamine A. , Matsusaka H. , Ushijima T. , Kawagoe Y. , Ogawa M. , Okita T.W. , Kumamaru T.	A Role for the Cysteine-Rich 10 kDa Prolamin in Protein Body I Formation in Rice.	Plant Cell Physiol.	52(6)	1003-16	2011	CYSP13,_,_,CYSR10	CysP13, OsCYSP13, CpP13, PG5a, Prol-06, pro13b.11, OsPRO13B.11, PROLM9, OsPROLM9,CysR14,CysR16,Prol-01, CysR10, OsCysR10, crP10, pro10.1, Ospro10.1
33096	21205187	Shen P. , Wang R. , Jing W. , Zhang W.	Rice phospholipase Dalpha is involved in salt tolerance by the mediation of H(+)-ATPase activity and transcription.	J. Integr. Plant Biol.	53(4)	289-99	2011		
33097	21645201	Kharabian-Masouleh A. , Waters D.L. , Reinke R.F. , Henry R.J.	Discovery of polymorphisms in starch-related genes in rice germplasm by amplification of pooled DNA and deeply parallel sequencing	Plant Biotechnol J.	9(9)	1074-1085	2011		
33098	21410288	Wakasa Y. , Tamakoshi C. , Ohno T. , Hirose S. , Goto T. , Nagaoka S. , Takaiwa F.	The hypocholesterolemic activity of transgenic rice seed accumulating lactostatin, a bioactive peptide derived from bovine milk beta-lactoglobulin.	J. Agric. Food Chem. 	59(8)	3845-50	2011		
33099	21527628	Zhang L. , Xiao S. , Li W. , Feng W. , Li J. , Wu Z. , Gao X. , Liu F. , Shao M.	Overexpression of a Harpin-encoding gene hrf1 in rice enhances drought tolerance.	J. Exp. Bot.	62(12)	4229-38	2011		
33100	21490163	Moore K.L. , Schr?der M. , Wu Z. , Martin B.G. , Hawes C.R. , McGrath S.P. , Hawkesford M.J. , Feng Ma J. , Zhao F.J. , Grovenor C.R.	High-resolution secondary ion mass spectrometry reveals the contrasting subcellular distribution of arsenic and silicon in rice roots.	Plant Physiol.	156(2)	913-24	2011	LSI2	Lsi2, SIET1, OsLsi2, OsSIET1
33101	21501886	Yang Y. , Yu C.L. , Wang X.M. , Yan C.Q. , Cheng Y. , Chen J.P.	Inoculation with Xanthomonas oryzae pv. oryzae induces thylakoid membrane association of Rubisco activase in Oryza meyeriana.	J. Plant Physiol.	168(14)	1701-4	2011		
33102	21596949	Zou L.P. , Sun X.H. , Zhang Z.G. , Liu P. , Wu J.X. , Tian C.J. , Qiu J.L. , Lu T.G.	Leaf Rolling Controlled by the Homeodomain Leucine Zipper Class IV Gene Roc5 in Rice.	Plant Physiol.	156(3)	1589-602	2011	OUL1,NRFG2	ROC5, Roc5(t), Roc5, GL2-5, OsROC5, CLF1, OsCLF1, OsOUL1, OsHDZ7, OsHDZIP7, HDZ7, HDZIP7,PFL, OsNRFG2
33103	21274561	Shaw D.J. , Gray J.C.	Visualisation of stromules in transgenic wheat expressing a plastid-targeted yellow fluorescent protein.	Planta.	233(5)	961-70	2011		
33104	21638061	Ying S. , Zhang D.F. , Li H.Y. , Liu Y.H. , Shi Y.S. , Song Y.C. , Wang T.Y. , Li Y.	Cloning and characterization of a maize SnRK2 protein kinase gene confers enhanced salt tolerance in transgenic Arabidopsis.	Plant Cell Rep.	30(9)	1683-99	2011		
33105	21518249	Guo T. , Liu X. , Wan X. , Weng J. , Liu S. , Liu X. , Chen M. , Li J. , Su N. , Wu F. , Cheng Z. , Guo X. , Lei C. , Wang J. , Jiang L. , Wan J.	Identification of a Stable Quantitative Trait Locus for Percentage Grains with White Chalkiness in Rice (Oryza sativa).	J. Integr. Plant Biol.	53(8)	598-607	2011		
33106	21540434	Gallavotti A. , Malcomber S. , Gaines C. , Stanfield S. , Whipple C. , Kellogg E. , Schmidt R.J.	BARREN STALK FASTIGIATE1 Is an AT-Hook Protein Required for the Formation of Maize Ears.	Plant Cell	23(5)	1756-71	2011		
33107	21443632	Nelson D. , Werck-Reichhart D.	A P450-centric view of plant evolution.	Plant J.	66(1)	194-211	2011		
33108	21493745	Shen Y. , Wang J. , Ding Y. , Lo S.W. , Gouzerh G. , Neuhaus J.M. , Jiang L.	The Rice RMR1 Associates with a Distinct Prevacuolar Compartment for the Protein Storage Vacuole Pathway.	Mol Plant	4(5)	854-68	2011	_,_	OsRMR2,  OsRING252, RING252,OsRMR3, OsRMR1, RMR1,  OsRING73, RING73
33109	21294842	Liang F. , Xin X. , Hu Z. , Xu J. , Wei G. , Qian X. , Yang J. , He H. , Luo X.	Genetic analysis and fine mapping of a novel semidominant dwarfing gene LB4D in rice.	J. Integr. Plant Biol.	53(4)	312-23	2011		
33110	20978084	Wang X.F. , He F.F. , Ma X.X. , Mao C.Z. , Hodgman C. , Lu C.G. , Wu P.	OsCAND1 is required for crown root emergence in rice.	Mol Plant	4(2)	289-99	2011	CAND1	OsCAND1
33111	21502187	Tsutsui T. , Yamaji N. , Feng Ma J.	Identification of a Cis-Acting Element of ART1, a C2H2-Type Zinc-Finger Transcription Factor for Aluminum Tolerance in Rice.	Plant Physiol.	156(2)	925-31	2011	STAR1,STAR2,ZOS12-02	OsENA2, OsABCI12, ENA2, ABCI12, OsSTAR1, OsSATR1,OsSTAR2, OsSATR2,OsART1, STAR3, OsZOS12-02, ART1
33112	21573806	Wang S.J. , Ho C.H. , Chen H.W.	Rice develop wavy seminal roots in response to light stimulus.	Plant Cell Rep.	30(9)	1747-58	2011		
33113	21467577	Li X. , Gao X. , Wei Y. , Deng L. , Ouyang Y. , Chen G. , Li X. , Zhang Q. , Wu C.	Rice APOPTOSIS INHIBITOR5 coupled with two DEAD-box adenosine 5'-triphosphate-dependent RNA helicases regulates tapetum degeneration.	Plant Cell	23(4)	1416-34	2011	API5,CP1,AIP1,AIP2	API5, Os API5, OsAPI5,OsCP1, Os CP1,AIP1, Os AIP1, OsAIP1, OsRH56, OsBAT1, UAP56, OsUAP56, OsBAT1/UAP56,AIP2, Os AIP2, OsAIP2, OsRH15
33114	20882959	Shimazu S. , Inui H. , Ohkawa H.	Phytomonitoring and phytoremediation of agrochemicals and related compounds based on recombinant cytochrome P450s and aryl hydrocarbon receptors (AhRs).	J. Agric. Food Chem. 	59(7)	2870-5	2011		
33115	21689368	Gray B.N. , Bougri O. , Carlson A.R. , Meissner J. , Pan S. , Parker M.H. , Zhang D. , Samoylov V. , Ekborg N.A. , Michael Raab R.	Global and grain-specific accumulation of glycoside hydrolase family 10 xylanases in transgenic maize (Zea mays).	Plant Biotechnol J.	9(9)	1100-8	2011		
33116	21178395	Kumar K. , Rao K.P. , Biswas D.K. , Sinha A.K.	Rice WNK1 is regulated by abiotic stress and involved in internal circadian rhythm.	Plant Signal Behav	6(3)	316-20	2011	WNK8,WNK7,WNK2,WNK9,WNK3,WNK4,WNK6,WNK5,WNK1	OsWNK8, STE20/MAPK3, STE20, MAPK3, OsSTE20, OsMAPK3,OsWNK7,OsWNK2,OsWNK9,OsWNK3,OsWNK4,OsWNK6,OsWNK5,OsWNK1
33117	21411180	Liu Y. , He J. , Jiang L. , Wu H. , Xiao Y. , Liu Y. , Li G. , Du Y. , Liu C. , Wan J.	Nitric oxide production is associated with response to brown planthopper infestation in rice.	J. Plant Physiol.	168(8)	739-45	2011	LEA3-1,_,_	OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3, OsLEA3A, LEA3A,OsNOA1,OsNR
33118	21637999	Kovi M.R. , Zhang Y. , Yu S. , Yang G. , Yan W. , Xing Y.	Candidacy of a chitin-inducible gibberellin-responsive gene for a major locus affecting plant height in rice that is closely linked to Green Revolution gene sd1.	Theor. Appl. Genet.	123(5)	705-14	2011	PH1	SCL1, OsSCL1, OsGRAS-3, OsGRAS3, GRAS-3, GRAS3, OsPH1,  ph1, CIGR, OsCIGR
33119	21220781	Feng H. , Yan M. , Fan X. , Li B. , Shen Q. , Miller A.J. , Xu G.	Spatial expression and regulation of rice high-affinity nitrate transporters by nitrogen and carbon status.	J. Exp. Bot.	62(7)	2319-32	2011	NRT2.4,NRT2.2,HTNE,NAR2.1,NAR2.2,NRT2.1	OsNRT2.4,OsNRT2.2, OsNRT2.1,NRT2.3, OsNRT2.3, OsNRT2;1, OsNRT2.3a, OsNRT2.3b, OsNRT2;3a, OsNRT2.5 ,OsNAR2.1, OsNRT3.1A,OsNAR2.2, OsNRT3.1B,OsNRT2.1, OsNRT2.2
33120	21416255	Guan H. , Zheng Z. , Grey P.H. , Li Y. , Oppenheimer D.G.	Conservation and divergence of plant LHP1 protein sequences and expression patterns in angiosperms and gymnosperms.	Mol. Genet. Genomics	285(5)	357-73	2011	LHP1	OsLHP1
33121	21598083	Zang B. , Li H. , Li W. , Deng X.W. , Wang X.	Analysis of trehalose-6-phosphate synthase (TPS) gene family suggests the formation of TPS complexes in rice.	Plant Mol. Biol.	76(6)	507-22	2011	TPS8,TPS2,TPS3,TPS4,TPS5,TPS6,TPS7,TPS9,TPS10,TPS11,TPS1	OsTPS8, OsTPS1, TPS1,OsTPS2,OsTPS3,OsTPS4,OsTPS5,OsTPS6,OsTPS7,OsTPS9,OsTPS10,OsTPS11,OsTPS1
33122	21384360	Li C. , Cao X. , Gu Z. , Wen H.	A preliminary study of the protease activities in germinating brown rice (Oryza sativa L.).	J. Sci. Food Agric.	91(5)	915-20	2011		
33123	21586431	Mitani-Ueno N. , Yamaji N. , Zhao F.J. , Ma J.F.	The aromatic/arginine selectivity filter of NIP aquaporins plays a critical role in substrate selectivity for silicon, boron, and arsenic.	J. Exp. Bot.	62(12)	4391-8	2011		
33124	21698394	Su Y. , Rao Y. , Hu S. , Yang Y. , Gao Z. , Zhang G. , Liu J. , Hu J. , Yan M. , Dong G. , Zhu L. , Guo L. , Qian Q. , Zeng D.	Map-based cloning proves qGC-6, a major QTL for gel consistency of japonica/indica cross, responds by Waxy in rice (Oryza sativa L.).	Theor. Appl. Genet.	123(5)	859-67	2011		
33125	21364321	Kishimoto K. , Kouzai Y. , Kaku H. , Shibuya N. , Minami E. , Nishizawa Y.	Enhancement of MAMP signaling by chimeric receptors improves disease resistance in plants.	Plant Signal Behav	6(3)	449-51	2011		
33126	21398647	Ye N. , Zhu G. , Liu Y. , Li Y. , Zhang J.	ABA controls H?O? accumulation through the induction of OsCATB in rice leaves under water stress.	Plant Cell Physiol.	52(4)	689-98	2011		
33127	21497713	Bae H. , Kim S.K. , Cho S.K. , Kang B.G. , Kim W.T.	Overexpression of OsRDCP1, a rice RING domain-containing E3 ubiquitin ligase, increased tolerance to drought stress in rice (Oryza sativa L.).	Plant Sci.	180(6)	775-82	2011	RDCP3,RDCP4,PUB15,RDCP2,DSG1,RDCP1	OsRDCP3,  OsRING166, RING166,OsRDCP4,  OsRING165, RING165,OsPUB15,OsRDCP2,  OsRING319, RING319,OsDSG1,  OsRING408, RING408,OsRDCP1,  OsRING320, RING320, OsREIW1, REIW1
33128	21610181	Horie T. , Brodsky D.E. , Costa A. , Kaneko T. , Lo Schiavo F. , Katsuhara M. , Schroeder J.I.	K+ Transport by the OsHKT2;4 Transporter from Rice with Atypical Na+ Transport Properties and Competition in Permeation of K+ over Mg2+ and Ca2+ Ions.	Plant Physiol.	156(3)	1493-507	2011	HKT1,HKT3,HKT9	OsHKT1, OsHKT2;1, HKT2;1, Ni (Nipponbare)-OsHKT1, Po (Pokkali)-HKT1, OsHKT1;1, HKT1;1,OsHKT3, OsHKT2;3, HKT2;3,OsHKT9, OsHKT2;4, HKT2;4
33130	21418523	Lu B. , Xie K. , Yang C. , Zhang L. , Wu T. , Liu X. , Jiang L. , Wan J.	Genetic analysis of two weak dormancy mutants derived from strong seed dormancy wild type rice N22 (Oryza sativa).	J. Integr. Plant Biol.	53(5)	338-46	2011		
33131	21039565	Steffens B. , Geske T. , Sauter M.	Aerenchyma formation in the rice stem and its promotion by H2O2.	New Phytol.	190(2)	369-78	2011		
33132	21637772	Griffiths J. , Barrero J.M. , Taylor J. , Helliwell C.A. , Gubler F.	ALTERED MERISTEM PROGRAM 1 Is involved in Development of Seed Dormancy in Arabidopsis.	PLoS One	6(5)	e20408	2011		
33133	21717189	Fukumoto T. , Kano A. , Ohtani K. , Yamasaki-Kokudo Y. , Kim B.G. , Hosotani K. , Saito M. , Shirakawa C. , Tajima S. , Izumori K. , Ohara T. , Shigematsu Y. , Tanaka K. , Ishida Y. , Nishizawa Y. , Tada Y. , Ichimura K. , Gomi K. , Akimitsu K.	Rare sugar D: -allose suppresses gibberellin signaling through hexokinase-dependent pathway in Oryza sativa L.	Planta.	234(6)	1083-1095	2011		
33134	21705388	Li X. , Bai H. , Wang X. , Li L. , Cao Y. , Wei J. , Liu Y. , Liu L. , Gong X. , Wu L. , Liu S. , Liu G.	Identification and validation of rice reference proteins for western blotting.	J. Exp. Bot.	62(14)	4763-72	2011		
33135	21628471	Hirai H. , Takai R. , Iwano M. , Nakai M. , Kondo M. , Takayama S. , Isogai A. , Che F.S.	Glycosylation regulates the specific induction of rice immune responses by Acidovorax avenae flagellin.	J. Biol. Chem.	286(29)	25519-30	2011		
33136	21447996	Fu J. , Yu H. , Li X. , Xiao J. , Wang S.	Rice GH3 gene family: Regulators of growth and development.	Plant Signal Behav	6(4)	570-4	2011		
33137	21624978	He J.H. , Shahid M.Q. , Li Y.J. , Guo H.B. , Cheng X.A. , Liu X.D. , Lu Y.G.	Allelic interaction of F1 pollen sterility loci and abnormal chromosome behaviour caused pollen sterility in intersubspecific autotetraploid rice hybrids.	J. Exp. Bot.	62(13)	4433-45	2011	SB	Sb*, S-b, Hst17, S24, F5-Du
33138	21705642	Shi J. , Tan H. , Yu X.H. , Liu Y. , Liang W. , Ranathunge K. , Franke R.B. , Schreiber L. , Wang Y. , Kai G. , Shanklin J. , Ma H. , Zhang D.	Defective Pollen Wall Is Required for Anther and Microspore Development in Rice and Encodes a Fatty Acyl Carrier Protein Reductase.	Plant Cell	23(6)	2225-46	2011	DEX1,NEF1,MS2,LTR1,RAFTIN1,WDA1,CYP704B2	Os DEX1, OsDEX1,Os NEF1, OsNEF1,OsMS2, OsDPW, DPW, DPW1, OsDPW1, OsFAR2, FAR2,OsCER1, CER1, OsGL1-4, GL1-4, Os CER1, OsLTR1,OsRAFTIN1, BURP13, OsBURP13, Os RAFTIN1,OsWDA1, Wda1, wda1, OS-CER1, OsGL1-5,OsCYP704B2
33139		Yoshimura, A., Nagayama, H., Sobrizal, Kurakazu, T., Sanchez, P. L., Doi, K., Yamagata, Y., et al.	Introgression lines of rice (Oryza sativa L.) carrying a donor genome from the wild species, O. glumaepatula Steud. and O. meridionalis Ng.	Breeding Science	60(5)	597-603	2010		
33140		Katsuyuki Ichitani, Satoru Taura,Takahiro Tezuka,Yuuya Okiyama,Tsutomu Kuboyama,	Chromosomal Location of HWA1 and HWA2,Complementary Hybrid Weakness Genes in Rice,	RICE	4(2)	29-38	2011	HWA2,HWA1	Hwa2(L1b), L-1-b(Lb), L1b, Hwa2,Hwa1(L1a), L-1-a(La), L1a, Hwa1
33141	17257172	Shima S, Matsui H, Tahara S, Imai R.	Biochemical characterization of rice trehalose-6-phosphate phosphatases supports distinctive functions of these plant enzymes.	FEBS J.	274(5)	1192-201.	2007	SALT,TPP5,TPP7,TPP4,TPP3,TPP6,TPP1,TPP8,MKK6,TPP9,TPP2	salT*(sal1), SalT1*, sal1, Sal1, SALT, ML, SalT, OsSalT, OsJRL, JRL, Osl43, OsL43, OsMBL1, MBL1, OsJRL01, JRL01, OsJRL1, JRL1,OsTPP5,OsTPP7,OsTPP4, OsTPP7, TPP7, OsTPP2, TPP2,OsTPP3, TPS3, OsTPS3,OsTPP6, OsTPP5, TPP5,OsTPP1, OsTPS, TPP,OsTPP8, OsTPP2,OsMKK6, OsMEK1, MEK1, OsMAPKK6, MAPKK6, OsMPKK6, MPKK6, OsMAP1, MAP1,OsTPP9, OsTPP3, TPP3,OsTPP2
33142		Wei, C.a , Xie, P.a , Chen, Y.b , Yu, H.b , Su, Y.c , Gu, M.a , Yan, C	Anatomical and chemical characteristics of culm of rice brittle mutant bc(t).	Funct. Plant Biol.	38(3)	227-235	2011		
33143	21602323	Chin,J.H., Gamuyao,R., Dalid,C., Bustamam,M., Prasetiyono,J., Moeljopawiro,S., Wissuwa,M. and Heuer,S.	Developing Rice with High Yield under Phosphorus Deficiency: Pup1 Sequence to Application	Plant Physiol.	156(3)	1202-1216	2011	_,_,_,_,_,PUPK20-2,PSTOL1,_	OsPupK04-1,OsPupK01,OsPupK53,OsPupK67,OsPupK05-1,OsPupK20-2, PupK20-2, DIR55, OsDIR55, OsjDIR55,Pstol1, OsPSTOL1, OsPSTOL, PSTOL, Pstol1/OsPupK46-2, OsPupK46-2, Pup1, PHO,OsPupK29-1
33144	21763541	Fang,S.A., Eu,T.I. and Chung,M.C.	Isolation and characterization of genome-specific markers in Oryza species with the BB genome	Plant Sci.	181(3)	300-308	2011		
33145	15032821	Fukuda,A., Okada,Y., Suzui,N., Fujiwara,T., Yoneyama,T. and Hayashi,H.	Cloning and characterization of the gene for a phloem-specific glutathione S-transferase from rice leaves	Physiol. Plantarum			2003		
33146	8811865	Groom,Q.J., Torres,M.A., Fordham-Skelton,A.P., Hammond-Kosack,K.E., Robinson,N.J. and Jones,J.D.G.	rbohA, a rice homologue of the mammalian gp91phox respiratory burst oxidase gene	Plant J.					
33147	0	Suzuki,Y., Takeuchi,Y. and Shirasawa,K.	Identification of a seed phospholipase D null allele in rice (Oryza sativa L.) and development of SNP markers for phospholipase D deficiency	Crop Sci.			2011	PLDalpha1	RPLD1, PLD1, OsPLDalpha1, OsC2DP2, C2DP2
33148	21674010	Xie,X., Molina,J., Hernandez,R., Reynolds,A., Boyko,A.R., Bustamante,C.D. and Purugganan,M.D.	Levels and Patterns of Nucleotide Variation in Domestication QTL Regions on Rice Chromosome 3 Suggest Lineage-Specific Selection	PLoS ONE	6 (6)	E20670	2011		
33149	10805599	Chae HS, Cho YG, Park MY, Lee MC, Eun MY, Kang BG, Kim WT	Hormonal cross-talk between auxin and ethylene differentially regulates@the expression of two members of the 1-aminocyclopropane-1-carboxylate oxidase gene family in rice (Oryza sativa L.).	Plant Cell Physiol	41	354-362	2000	ACO3,ACO2	OsACO3, ACO2, OsACO2,OsACO2, OsACO1
33150	20502443	Li F, Liu W, Tang J, Chen J, Tong H, Hu B, Li C, Fang J, Chen M,Chu C	Rice DENSE AND ERECT PANICLE 2 is essential@for determining panicle outgrowth and elongation.	Cell Res	20	838-849	2010	DEP2	
33151	21447056	Okumura K., Hirasawa M., Yang L., Suzuki K., Mori A., Ohmachi Y., Takaiwa F., Hiroi T., Takada K., Ohtomo T., Hirose S., Kaminuma O., Takai T., Noda Y., Ogawa H., Umezu-Goto M.	Prevention of allergic asthma by vaccination with transgenic rice seed expressing mite allergen: induction of allergen-specific oral tolerance without bystander suppression.	Plant biotechnology journal	9(9)	982-90	2011		
33152	21278385	Umezu N., Kondo K., Hanzawa N., Mitsui T., Maruta S., Yamada M.D.	Biochemical characterization of the novel rice kinesin K23 and its kinetic study using fluorescence resonance energy transfer between an intrinsic tryptophan residue and a fluorescent ATP analogue.	Journal of biochemistry	149(5)	539-50	2011		
33153	21718517	Zhang B., Ke Y., Zhang W., Yang Q., He H., Wang Y., Zhou J., Chen X.	Phosphoproteins regulated by heat stress in rice leaves.	Proteome science	9	37	2011		
33154	21486466	Helmy M., Ishihama Y., Tomita M.	OryzaPG-DB: rice proteome database based on shotgun proteogenomics.	BMC Plant Biology	11	63	2011		
33155	21435050	Kariya A., Shimizu S., Aida M., Hanano K., Zhao L., Tasaka M., Takeda S., Matsui M.	CUP-SHAPED COTYLEDON1 transcription factor activates the expression of LSH4 and LSH3, two members of the ALOG gene family, in shoot organ boundary cells.	The Plant journal : for cell and molecular biology	66(6)	1066-77	2011		
33156	21610725	Takanashi H., Ishimaru Y., Bashir K., Fujimoto M., Shimo H., An G., Nagasaka S., Nishizawa N.K., Nakanishi H., Tsutsumi N.	The rice mitochondrial iron transporter is essential for plant growth	Nature Communications	2	322	2011	IRT2,YSL2,YSL15,FPN1,VIT1,NRAMP1,FRO2,MIT,IRT1	OsIRT2, OsIRT1, OsZIP15, ZIP15,OsYSL2, Os-YSL2, OsYs6 ,OsYSL15, OsYs7,OsFPN1,OsVIT2, OsVIT1, VIT2, ,OsNramp1, OsNRAMP1, OsNramp6,OsFRO2, OsFRO1,OsMIT,OsIRT1, ZIP10, OsZIP10, OsZIP12, ZIP12
33157	21146515	Yamaki S., Nonomura K., Kurata N., Nagato Y.	Ovule is a lateral organ finally differentiated from the terminating floral meristem in rice.	Developmental biology	351(1)	208-16	2011		
33158	21683874	Kurata N., Thirumurugan T., Ohme-Takagi M., Hiratsu K., Serizawa A., Ito Y.	Aberrant vegetative and reproductive development by overexpression and lethality by silencing of OsHAP3E in rice	Plant Science	181	105-110	2011		
33159	21186175	Yokoyama K., Horiuchi Y., Abe R., Tsuchida H., Shimizu A., Fujii T., Watanabe M., Mochizuki T., Yamamoto N., Kikuchi S., Sano K., Hongo K., Kurata N., Fujita M., Hamada K., Suwabe K., Yano K., Oki N., Nagayama T., Matsuoka M.	OryzaExpress: An integrated database of gene expression networks and omics annotations in rice	Plant and Cell Physiology	52	220-229	2011		
33160	21309865	Kimura F., Hirakata K., Ito Y., Tsuda K., Kurata N., Takasugi T., Nakagawa K., Eiguchi M.	Fatty acid elongase is required for shoot development in rice	Plant Journal	66	680-688	2011		
33161	20400938	Dai C., Hong-Wei Xue	Rice early flowering1, a CKI, phosphorylates DELLA protein SLR1 to negatively regulate gibberellin signalling.	The EMBO journal	29(11)	1916-27	2010	SLR1,HD16	slr1-1, slr1, slr, GAI, OsGAI, OsSLR1, Os SLR1, OsRGA1, OsGRAS-18, OsGRAS-18, GRAS-18, GRAS18, SLR-1,Hd16, EL1, CK1, Hd16/CKI, Hd16/EL1
33162	18173378	Yamaguchi S.	Gibberellin metabolism and its regulation.	Annual Review of Plant Biology	59	225-51	2008	PRL5,GA3OX1,SD1,GA2OX5,D18,D35,GA2OX6,EUI1,KAO,GA2OX2,GA2OX1,CPS1,GA20OX3,GA2OX3,KS1,GNP1	OsGA20ox4, ga20ox4, GA20ox2, Prl5, Prl5/GA20ox4, OsPrl5,OsGA3ox1, GA3ox1, OsGA3OX1,sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2, OsPHQ1, OsPHq1, PHq1,OsGA2ox5, 2-ODD32, Os2-ODD32, 2ODD32, Os2ODD32,d18-h  (d18-I, d18h), dwf15, d25, d18, d18-k, d18-AD, d18-dy, OsGA3ox2, ga3ox2, OsGA3OX2, GA3OX2, OsGA3ox-2, GA3ox-2, GA3ox1,d35, d35(t), dwf30, OsKOL2, KOL2, KO2, OsKO2, OSKO2, KO, CYP701A, CYP701A6, Os KO2, OsKOL2/CYP701A,OsGA2ox6,eui1, GA16,17ox, CYP714D1, EUI, CYP714D1/EUI, OsEUI, LG5, OsLG5,OsKAO, kao, CYP88A5, OSKAO, Os KAO, RPE1, KO1,OsGA2ox2, ga2ox 2, OsGA2ox-2,OsGA2ox1, ga2ox-1, OsGA2ox-1, ga2ox, ga2ox 1, GA2ox1,OsCPS1, OsCPS1ent, OsCPS, Os CPS1, OsTPS4, TPS4, TPS29, OsTPS29, OsCPS1-L, OsCPS1-S,OsGA20ox3, ga20ox3,OsGA2ox3, ga2ox 3, OsGA2ox-3, GA2ox3, GA2ox-3, GA2ox4,OsKS1, KS1, KS1A, KSL1, OsKSL1, OsKS1A, OsKS1B, OsKS1C, Ks1, Os KS1, OsTPS26, TPS6, OsTPS6,GA20OX1, OsGA20ox1, 20ox1, GA20ox-1, ga20ox1, Os20ox, C20OX2, OsGA20ox2, OsGA20ox-1, GA20ox1, OsGNP1
33163	12736788	Sakai M., Saito T., Kobayashi M., Tanaka H., Matsuoka M., Sakamoto T.	Expression of novel rice gibberellin 2-oxidase gene is under homeostatic regulation by biologically active gibberellins.	Journal of plant research	116(2)	161-4	2003	GA2OX1,GA2OX3	OsGA2ox1, ga2ox-1, OsGA2ox-1, ga2ox, ga2ox 1, GA2ox1,OsGA2ox3, ga2ox 3, OsGA2ox-3, GA2ox3, GA2ox-3, GA2ox4
33164	15821147	Lee DJ, Zeevaart JA.	Molecular cloning of GA 2-oxidase3 from spinach and its ectopic expression in Nicotiana sylvestris.	Plant physiology	138(1)	243-54	2005	GA2OX6,GA2OX1,GA2OX5	OsGA2ox6,OsGA2ox1, ga2ox-1, OsGA2ox-1, ga2ox, ga2ox 1, GA2ox1,OsGA2ox5, 2-ODD32, Os2-ODD32, 2ODD32, Os2ODD32
33165	18952778	Lo SF, Yang SY, Chen KT, Hsing YI, Zeevaart JA, Chen LJ, Yu SM.	A novel class of gibberellin 2-oxidases control semidwarfism, tillering, and root development in rice.	The Plant Cell	20(10)	2603-18	2008	GA2OX1,GA2OX8,GA2OX10,GA2OX9,GA2OX7,GA2OX5,GA2OX6	OsGA2ox1, ga2ox-1, OsGA2ox-1, ga2ox, ga2ox 1, GA2ox1,OsGA2ox8,OsGA2ox10,OsGA2ox9, GA2ox7, 2-ODD35, Os2-ODD35, 2ODD35, Os2ODD35,OsGA2ox7,OsGA2ox5, 2-ODD32, Os2-ODD32, 2ODD32, Os2ODD32,OsGA2ox6
33166		Toyomatsu T Kawaide H Sekimoto H von Numers C Phillips AL et a	Cloning and characterization of a cDNA encoding gibberellin 20-oxidase from rice (Oryza sativa) seedlings.	Physiol. Plantarum.	99	111-18	1997	GNP1	GA20OX1, OsGA20ox1, 20ox1, GA20ox-1, ga20ox1, Os20ox, C20OX2, OsGA20ox2, OsGA20ox-1, GA20ox1, OsGNP1
33167	18718932	Hirano K., Aya K., Hobo T., Sakakibara H., Kojima M., Rosalyn Angeles Shim, Hasegawa Y., Miyako Ueguchi-Tanaka, Matsuoka M.	Comprehensive transcriptome analysis of phytohormone biosynthesis and signaling genes in microspore/pollen and tapetum of rice.	Plant & cell physiology	49(10)	1429-50	2008	SLRL1,FK1,YUCCA2,YUCCA1,YUCCA6,DET2;1,YUCCA3,FK2,SLRL2,YUCCA5,YUCCA7,DET2;2,YUCCA4	OsSLRL1, OsGAI, OsSLRL, OsGRAS-1, OsGRAS1, GAI, SLRL, GRAS-1, GRAS1,OsFK1,OsYUCCA2, OsYUC2, YUC2,OsYUCCA1, OsYUC1, YUC1,OsYUCCA6, OsYUC6, YUC6,OsDET2;1,OsYUCCA3, OsYUC3, YUC3,OsFK2,OsSLRL2, OsGRAS-30, OsGRAS30, GRAS-30, GRAS30,OsYUCCA5, OsYUC5, YUC5,OsYUCCA7, OsYUC7, OsYUC5, YUC5, YUC7,OsDET2;2,OsYUCCA4, OsYUC4, YUC4, YUCCA6, OsYUCCA6
33168	20625906	Yu H., Wang M., Tang D., Wang K., Chen F., Gong Z., Gu M., Cheng Z.	OsSPO11-1 is essential for both homologous chromosome pairing and crossover formation in rice.	Chromosoma	119(6)	625-36	2010	ZEP1,TOP6A1	OsZEP1,OsTOP6A1, OsSPO11-1, OsSPO11A, SPO11-1
33169	19417775	Chang L., Ma H., Hong-Wei Xue	Functional conservation of the meiotic genes SDS and RCK in male meiosis in the monocot rice.	Cell research	19(6)	768-82	2009	SDS,RMC1	OsSDS, Orysa;SDS,MER3, mer3, OsMER3, RCK, OsRCK, Os-MER3
33170	19458115	Frank F White, Yang B.	Host and pathogen factors controlling the rice-Xanthomonas oryzae interaction.	Plant physiology	150(4)	1677-86	2009	XA13	xa13, Xa13, Os8N3, Os-8N3, 8N3, OsSWEET11, SWEET11, OsSWEET11/Xa13, Xa13/Os8N3/SWEET11, Os8N3/Xa13, OsSWEET11/Os8N3, OsSWEET11a, SWEET11a
33171	20699274	Li T., Huang S., Wen Zhi Jiang, Wright D., Martin H Spalding, Donald P Weeks, Yang B.	TAL nucleases (TALNs): hybrid proteins composed of TAL effectors and FokI DNA-cleavage domain.	Nucleic acids research	39(1)	359-72	2011	XA41	OsSWEET14, SWEET14, Os11N3, Os-11N3, 11N3, Xa41(t), xa41, Os11N3/SWEET14, OsSWEET14/Os11N3
33172	16707243	Jain M., Akhilesh K Tyagi, Jitendra P Khurana	Genome-wide analysis, evolutionary expansion, and expression of early auxin-responsive SAUR gene family in rice (Oryza sativa).	Genomics	88(3)	360-71	2006	SAUR1,SAUR39,SAUR13,SAUR11,SAUR14,SAUR18,SAUR15,SAUR17,SAUR16,SAUR21,SAUR26,SAUR30,SAUR31,SAUR36,SAUR4,SAUR40,SAUR41,SAUR43,SAUR47,SAUR50,SAUR51,SAUR53,SAUR54,SAUR55,SAUR58,SAUR34,SAUR52,SAUR44,SAUR48,SAUR49,SAUR9,SAUR32,SAUR3,SAUR7,SAUR24,SAUR10,SAUR33,SAUR28,SAUR5,SAUR38,SAUR56,SAUR6,SAUR37,SAUR46,SAUR25,SAUR27,SAUR29,SAUR42,SAUR8,SAUR19,SAUR45,SAUR22,SAUR20,SAUR12,SAUR57,SAUR23,SAUR2,SAUR35	OsSAUR1,OsSAUR39,OsSAUR13,OsSAUR11,OsSAUR14,OsSAUR18,OsSAUR15,OsSAUR17,OsSAUR16,OsSAUR21,OsSAUR26,OsSAUR30,OsSAUR31,OsSAUR36,OsSAUR4,OsSAUR40,OsSAUR41,OsSAUR43,OsSAUR47,OsSAUR50,OsSAUR51,OsSAUR53,OsSAUR54,OsSAUR55,OsSAUR58,OsSAUR34,OsSAUR52,OsSAUR44,OsSAUR48,OsSAUR49,OsSAUR9, SAUR50,OsSAUR32,OsSAUR3, OsSAUR72,OsSAUR7,OsSAUR24,OsSAUR10,OsSAUR33,OsSAUR28,OsSAUR5,OsSAUR38, OsSAURq9, SAURq9,OsSAUR56,OsSAUR6,OsSAUR37, SAUR76, OsSAUR76,OsSAUR46, SAUR36, OsSAUR36,OsSAUR25,OsSAUR27,OsSAUR29,OsSAUR42,OsSAUR8,OsSAUR19,OsSAUR45,OsSAUR22,OsSAUR20,OsSAUR12,OsSAUR57,OsSAUR23,OsSAUR2,OsSAUR35
33173	19490115	Jain M., Jitendra P Khurana	Transcript profiling reveals diverse roles of auxin-responsive genes during reproductive development and abiotic stress in rice.	The FEBS journal	276(11)	3148-62	2009	IAA10,SAUR22,IAA24,SAUR34,SAUR11,SAUR48,SAUR18,SAUR49,IAA19,SAUR29,SAUR56,SAUR39,SAUR33,SAUR57,SAUR25,SAUR3,SAUR24,SAUR28,SAUR10,SAUR2,SAUR5,SAUR38,SAUR12,SAUR42,SAUR9,SAUR23,SAUR15,SAUR21,SAUR30,SAUR31,SAUR41,SAUR51,SAUR53,SAUR54,SAUR58,SAUR55,SAUR20,SAUR8,SAUR19	OsIAA10, OsIAA5, DLN71, OsDLN71,OsSAUR22,OsIAA24,OsSAUR34,OsSAUR11,OsSAUR48,OsSAUR18,OsSAUR49,OsIAA19,OsSAUR29,OsSAUR56,OsSAUR39,OsSAUR33,OsSAUR57,OsSAUR25,OsSAUR3, OsSAUR72,OsSAUR24,OsSAUR28,OsSAUR10,OsSAUR2,OsSAUR5,OsSAUR38, OsSAURq9, SAURq9,OsSAUR12,OsSAUR42,OsSAUR9, SAUR50,OsSAUR23,OsSAUR15,OsSAUR21,OsSAUR30,OsSAUR31,OsSAUR41,OsSAUR51,OsSAUR53,OsSAUR54,OsSAUR58,OsSAUR55,OsSAUR20,OsSAUR8,OsSAUR19
33174	11904292	Min Chul Kim, Sang Hyoung Lee, Jong Kyong Kim, Hyun Jin Chun, Man Soo Choi, Woo Sik Chung, Byeong Cheol Moon, Chang Ho Kang, Chan Young Park, Jae Hyuk Yoo, Yun Hwan Kang, Seong Cheol Koo, Yoon Duck Koo, Jae Cheol Jung, Sun Tae Kim, Paul Schulze-Lefert, Sang Yeol Lee, Moo Je Cho	Mlo, a modulator of plant defense and cell death, is a novel calmodulin-binding protein. Isolation and characterization of a rice Mlo homologue.	The Journal of biological chemistry	277(22)	19304-14	2002		
33175	12437305	Elliott C., Zhou F., Spielmeyer W., Panstruga R., Paul Schulze-Lefert	Functional conservation of wheat and rice Mlo orthologs in defense modulation to the powdery mildew fungus.	Molecular plant-microbe interactions : MPMI	15(10)	1069-77	2002		
33176	15352871	Elliott C., Judith Muller, Miklis M., Riyaz A Bhat, Paul Schulze-Lefert, Panstruga R.	Conserved extracellular cysteine residues and cytoplasmic loop-loop interplay are required for functionality of the heptahelical MLO protein.	The Biochemical journal	385(Pt 1)	243-54	2005		
33177	21457711	He X., Hou X., Shen Y., Huang Z.	TaSRG, a wheat transcription factor, significantly affects salt tolerance in transgenic rice and Arabidopsis.	FEBS letters	585(8)	1231-7	2011		
33178	0	Asano,K., Takashi,T., Miura,K., Qian,Q., Kitano,H., Matsuoka,M. and Ashikari,M.	Genetic and molecular analysis of utility of sd1 alleles in rice breeding	Breed. Sci.	57	53-58	2007	SD1	sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2, OsPHQ1, OsPHq1, PHq1
33179	21771914	Eom,J.S., Cho,J.I., Reinders,A., Lee,S.W., Yoo,Y., Tuan,P.Q., Choi,S.B., Bang,G., Park,Y.I., Cho,M.H., Bhoo,S.H., An,G., Hahn,T.R., Ward,J.M. and Jeon,J.S.	Impaired Function of the Tonoplast-Localized Sucrose Transporter in Rice, OsSUT2, Limits the Transport of Vacuolar Reserve Sucrose and Affects Plant Growth	Plant Physiol.	157(1)	109-119	2011	SUT2	OsSUT2(t), SUT2M, OsSUT2, OsSUT2M, OsSUT5
33180	0	Feng,J.X., Cao,L., Li,J., Duan,C.J., Luo,X.M., Le,N., Wei,H.H., Liang,S.J., Chu,C.C., Pan,Q.H. and Tang,J.L.	Involvement of OsNPR1/NH1 in rice basal resistance to blast fungus Magnaporthe oryzae	Eur. J. Plant Pathol.	131(2)	221-235	2011	NH1	OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2, DLN5, OsDLN5,  OsBTBA1, BTBA1
33181	21981410	Kusumi,K., Sakata,C., Nakamura,T., Kawasaki,S., Yoshimura,A. and Iba,K.	A novel plastid protein NUS1 is essential for build-up of the genetic system for early chloroplast development under cold stress condition	Plant J.	68(6)	1039-50	2011	V1	v1, NUS1,OsV1, OsNUS1
33182	21896764	La,H., Ding,B., Mishra,G.P., Zhou,B., Yang,H., Bellizzi Mdel,R., Chen,S., Meyers,B.C., Peng,Z., Zhu,J.K. and Wang,G.L.	A 5-methylcytosine DNA glycosylase/lyase demethylates the retrotransposon Tos17 and promotes its transposition in rice	Proc. Natl. Acad. Sci. U.S.A.	108(37)	15498-15503	2011	TA2,TOS17,DNG704,DNG701,DNG703	ROS1A, ROS1a, DME1, OsROS1A, OsROS1, ROS1, mOsROS1, ROS1A/DNG702, DNG702, OsDNG702,Tos17, Osr21, Tos17chr10, Tos17_Chr10, Tos17chr7, Tos17_Chr7,OsROS1D, ROS1D, ROS1d, ROS1D/DNG704, OsDNG704,ROS1C, ROS1c, Os ROS1C, DME2, OsDNG701, ROS1C/DNG701,OsDNG703
33183	21753115	Qi,W., Sun,F., Wang,Q., Chen,M., Huang,Y., Feng,Y.Q., Luo,X. and Yang,J.	Rice Ethylene-Response AP2/ERF Factor OsEATB Restricts Internode Elongation by Down-Regulating a Gibberellin Biosynthetic Gene	Plant Physiol.	157(1)	216-228	2011	ERF3,ERF91,ERF72,ERF64,ERF71,ERF102	AP37, OsAP37, OsERF3, OsERF#075, OsERF075, OsERF75, ERF75, AP2/EREBP#004, AP2/EREBP4, OsBIERF2, BIERF2, DLN23, OsDLN23,OsERF#091, OsERF091, OsERF91, AP59, OsAP59, AP2/EREBP#147, AP2/EREBP147, OsBIERF3, BIERF3,OsEREBP, OsERF#072, OsERF072, OsERF72, AP2/EREBP#064, AP2/EREBP64, BIERF1, OsBIERF1, OsEBP2,OsERF#064, OsERF064, OsERF64, AP2/EREBP#029, AP2/EREBP29, OsBIERF4, BIERF4,OsERF#071, OsERF071, OsERF71, AP2/EREBP#124, AP2/EREBP124, OsERF15,OsERF#102, OsERF102, AP2/EREBP#123, AP2/EREBP123, OsEATB, EATB
33184	21771866	Wang,C.W., Chen,W.C., Lin,L.J., Lee,C.T., Tseng,T.H. and Leu,W.M.	OIP30, a RuvB-Like DNA Helicase 2, is a Potential Substrate for the Pollen-Predominant OsCPK25/26 in Rice	Plant Cell Physiol.	52(9)	1641-1656	2011	_,CDPK26,CDPK2,CDPK25,CDPK1	OIP30,OsCDPK26, OsCPK26, CPK26,OsCDPK2, OsCPK2, CPK2,OsCDPK25, OsCPK25, CPK25,OsCDPK1, OsCPK1, CPK1
33185	21908441	Zhong,R., Lee,C., McCarthy,R.L., Reeves,C.K., Jones,E.G. and Ye,Z.H.	Transcriptional activation of secondary wall biosynthesis by rice and maize NAC and MYB transcription factors	Plant Cell Physiol.			2011	NAC18,NAC82,MYB46,NAC90,NAC31,NAC29,NAC56,_	ONAC018, ONAC18, OsSWN4,OsSWN6, ONAC082, ONAC82,OsMYB46, OsMYB122, MYB122, Os2R_MYB96, 2R_MYB96 ,OsSWN7, SWN7, ONAC090, ONAC90, VND6, VND4/5/6, OsVND6, OsVND4/5/6, DLN155, OsDLN155,ONAC031, ONAC31, OsSWN3,ONAC029, ONAC29, OsSWN2, OsSWN2L, OsSWN2S, OsNST1/2, SWN2, SWN2L, SWN2S, NST1/2, DLN201, OsDLN201,ONAC056, ONAC56, OsSWN5, SWN5,ONAC007, ONAC7, OsSND1, SND1, OsSWN1, SWN1, DLN157, OsDLN157
33188	21626211	Hanada K., Hase T., Toyoda T., Shinozaki K., Okamoto M.	Origin and evolution of genes related to ABA metabolism and its signaling pathways	Journal of plant research	124	455-465	2011		
33189	21495624	Sturms R., Dispirito A.A., Hargrove M.S.	Plant and cyanobacterial hemoglobins reduce nitrite to nitric oxide under anoxic conditions	Biochemistry	50	3873-3878	2011		
33194	21478444	Rautengarten C., Ebert B., Herter T., Petzold C.J., Ishii T., Mukhopadhyay A., Usadel B., Scheller H.V.	The interconversion of UDP-arabinopyranose and UDP-arabinofuranose is indispensable for plant development in Arabidopsis	Plant Cell	23	1373-1390	2011		
33196		Ni D., Zhang S., Chen S., Xu Y., Li L., Li H., Wang Z., Cai X., Li Z., Yang J.	Improving cooking and eating quality of Xieyou57, an elite indica hybrid rice, by marker-assisted selection of the Wx locus	Euphytica	179	355-362	2011		
33202	21317339	Hu B., Zhu C., Li F., Tang J., Wang Y., Lin A., Liu L., Che R., Chu C.	Leaf tip necrosis1 plays a pivotal role in the regulation of multiple phosphate starvation responses in rice	Plant physiology	156	1101-1105	2011	IRT1,PAP10,MIR399J,LTN1,MIR399F	OsIRT1, ZIP10, OsZIP10, OsZIP12, ZIP12,OsPAP10,OsmiR399j, osa-miR399j, osa-MIR399j, Os-miR399j, miR399j,LTN1, OsPHO2, PHO2.1, PHO2.2, PHO2, OsUBC35, UBC35,OsmiR399f, osa-miR399f, osa-MIR399f, Os-miR399f
33203	21540434	Gallavotti A., Malcomber S., Gaines C., Stanfield S., Whipple C., Kellogg E., Schmidta R.J.	BARREN STALK FASTIGIATE1 is an at-hook protein required for the formation of maize ears	Plant Cell	23	1756-1771	2011		
33206	21384112	Zhang Y.X., Wang Q., Jiang L., Liu L.L., Wang B.X., Shen Y.Y., Cheng X.N., Wan J.	Fine mapping of qSTV11KAS, a major QTL for rice stripe disease resistance	Theoretical and Applied Genetics	122	1591-1604	2011		
33207	21558309	Kobayashi Y., Motose H., Iwamoto K., Fukuda H.	Expression and genome-wide analysis of the xylogen-type gene family	Plant and Cell Physiology	52	1095-1106	2011		
33210		Rajpurohit D., Kumar R., Kumar M., Paul P., Awasthi A., Osman Basha P., Puri A., Jhang T., Singh K., Dhaliwal H.S.	Pyramiding of two bacterial blight resistance and a semidwarfing gene in Type 3 Basmati using marker-assisted selection	Euphytica	178	111-126	2011	XA13,SD1,SK2(T)(SCL, FGR),XA21	xa13, Xa13, Os8N3, Os-8N3, 8N3, OsSWEET11, SWEET11, OsSWEET11/Xa13, Xa13/Os8N3/SWEET11, Os8N3/Xa13, OsSWEET11/Os8N3, OsSWEET11a, SWEET11a,sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2, OsPHQ1, OsPHq1, PHq1,sk2(t)(scl, fgr), fgr, scl, BAD2, BADH2, sk2, OsBADH2, Badh2, badh2, Os2AP, BADH-2, OsALDH10A8, ALDH10A8 ,Xa21*, Xa21, OsXA21
33216	21516334	Lu S., Friesen T.L., Faris J.D.	Molecular characterization and genomic mapping of the pathogenesis-related protein 1 (PR-1) gene family in hexaploid wheat (Triticum aestivum L.)	Molecular Genetics and Genomics	285	485-503	2011		
33218	21398647	Ye N., Zhu G., Liu Y., Li Y., Zhang J.	ABA controls H2O2 accumulation through the induction of OsCATB in rice leaves under water stress	Plant and Cell Physiology	52	689-698	2011		
33222	21502188	Ji X., Dong B., Shiran B., Talbot M.J., Edlington J.E., Hughes T., White R.G., Gubler F., Dolferus R.	Control of abscisic acid catabolism and abscisic acid homeostasis is important for reproductive stage stress tolerance in cereals	Plant physiology	156	550-563	2011		
33226		Ignacimuthu S., Raveendar S.	Agrobacterium mediated transformation of indica rice (Oryza sativa L.) for insect resistance	Euphytica	179	277-286	2011		
33231	21456578	Wulff R.P., Lundqvist J., Rutsdottir G., Hansson A., Stenbaek A., Elmlund D., Elmlund H., Jensen P.E., Hansson M.	The activity of barley NADPH-dependent thioredoxin reductase C is independent of the oligomeric state of the protein: Tetrameric structure determined by cryo-electron microscopy	Biochemistry	50	3713-3723	2011		
33235		MORITA Y., KYOZUKA J.	Identification of rice PIN homologs	RGN	21	87-88	2004	PIN1A,PIN1D,PIN1B,LRA1,PIN1C,PIN6A,PIN6B	PIN1C, OsPIN1C, OsPIN1c, OsPIN1a,OsPIN1D, OsPIN1d,PIN1A, OsPIN1A, OsPIN1a, REH1, OsPIN1, OsPIN1b, REH1/OsPIN1,OsPIN2, PIN2, OsLRA1, WAR1, OsWAR1,PIN1B, OsPIN1B, OsPIN1b, OsPIN1c,OsPIN6A, OsPIN6a,OsPIN6B, OsPIN6b
33236	12203890	Ganesh Kumar Agrawal, Rakwal R., Yonekura M., Kubo A., Saji H.	Proteome analysis of differentially displayed proteins as a tool for investigating ozone stress in rice (Oryza sativa L.) seedlings.	Proteomics	2(8)	947-59	2002	APX4,APX3,APX7,APX6,APX1,APX2,APX5,APX8	OsAPx4, OsAPx04, OSAPX4, APx4, pAPX4,OsAPx3, OsAPx03, OSAPX3, APx3, mAPX,OsAPx7, OsAPx07, OSAPX7, APx7, sAPX,OsAPx6, OsAPx06, OSAPX6, APx6,OsAPX1, APXa, OsAPXa, OsAPx01, OsAPx1, OSAPX1, APx1, cAPX, APX2, cAPXa, OscAPXa,OsAPX2, OsAPx02, APXb, OsAPx2, OSAPX2, APx2, cAPX, OsAPX1, APX1,OsAPx5, OsAPx05, OSAPX5, APx5,OsAPx8, OsAPx08, OSAPX8, APx8, OsAPX8
33237	11181723	Y Sato, T Murakami, H Funatsuki, S Matsuba, H Saruyama, M Tanida	Heat shock-mediated APX gene expression and protection against chilling injury in rice seedlings.	Journal of Experimental Botany	52(354)	145-51	2001	APX1,APX6,APX4,APX3,APX7,APX2,APX8,APX5	OsAPX1, APXa, OsAPXa, OsAPx01, OsAPx1, OSAPX1, APx1, cAPX, APX2, cAPXa, OscAPXa,OsAPx6, OsAPx06, OSAPX6, APx6,OsAPx4, OsAPx04, OSAPX4, APx4, pAPX4,OsAPx3, OsAPx03, OSAPX3, APx3, mAPX,OsAPx7, OsAPx07, OSAPX7, APx7, sAPX,OsAPX2, OsAPx02, APXb, OsAPx2, OSAPX2, APx2, cAPX, OsAPX1, APX1,OsAPx8, OsAPx08, OSAPX8, APx8, OsAPX8,OsAPx5, OsAPx05, OSAPX5, APx5
33238	14644501	Ganesh Kumar Agrawal, Nam Soo Jwa, Iwahashi H., Rakwal R.	Importance of ascorbate peroxidases OsAPX1 and OsAPX2 in the rice pathogen response pathways and growth and reproduction revealed by their transcriptional profiling.	Gene	322	93-103	2003	APX8,APX3,APX1,APX6,APX4,APX7,APX5,APX2	OsAPx8, OsAPx08, OSAPX8, APx8, OsAPX8,OsAPx3, OsAPx03, OSAPX3, APx3, mAPX,OsAPX1, APXa, OsAPXa, OsAPx01, OsAPx1, OSAPX1, APx1, cAPX, APX2, cAPXa, OscAPXa,OsAPx6, OsAPx06, OSAPX6, APx6,OsAPx4, OsAPx04, OSAPX4, APx4, pAPX4,OsAPx7, OsAPx07, OSAPX7, APx7, sAPX,OsAPx5, OsAPx05, OSAPX5, APx5,OsAPX2, OsAPx02, APXb, OsAPx2, OSAPX2, APx2, cAPX, OsAPX1, APX1
33239	15832681	Yu-Chang Tsai, Chwan-Yang Hong, Li-Fei Liu, Ching Huei Kao	Expression of ascorbate peroxidase and glutathione reductase in roots of rice seedlings in response to NaCl and H2O2.	Journal of plant physiology	162(3)	291-9	2005	APX1,GR2	OsAPX1, APXa, OsAPXa, OsAPx01, OsAPx1, OSAPX1, APx1, cAPX, APX2, cAPXa, OscAPXa,OsGR2, RGRC2, OsGR, OsGR3, OsRGRC2
33240	11855722	Dong A., Xin H., Yu Y., Sun C., Cao K., Wen-Hui Shen	The subcellular localization of an unusual rice calmodulin isoform, OsCaM61, depends on its prenylation status.	Plant Molecular Biology	48(3)	203-10	2002	CAM61	CaM61, OsCaM61, OsCML1, OsCML1d
33241		Angeles-E-R, Khush-G-S	Genetic analysis of resistance to green leafhopper, Nephotettix virescens (Distant), in three varieties of rice	Plant Breeding	119	446-448	2000	GLH10,GLH11	glh10t, glh10(t), glh10,Glh11t, Glh11(t), Glh11 
33242		Barman,S.R., Gowda,M., Venu,R.C., Chattoo,B.B.	Identification of a major blast resistance gene in the rice cultivar 'Tetep'	Plant Breeding	123	300-302	2004	PITP	Pi-tp(t), Pitp(t), Pi-tp
33243		Tabien,R.E., Li-Z, Paterson,A.H., Marchetti,M.A., Stansel,J.W., Pinson,S.R.M.	Mapping of four major rice blast resistance genes from 'Lemont'and 'Teqing' and evaluation of their combinatorial effect for field resistance	Theoretical and Applied Genetics	101	1215-1225	2000	PILM2,PIB,PITQ6,PITQ5,PIQ1	Pi-lm2, Pilm2, Pi lm2, Pib2,Pi b(Pi s), Pis, Pib, Pi-s, Pi-hy,Pi-tq6, Pitq6,Pitq5*, Pi-tq5, Pi-tq5, Pitq-5, Pitq5,Piq1*, Pitq1*, Pitq1, Pi-tq1, Pitq-1
33244	20404146	Beuchat J., Li S., Ragni L., Shindo C., Michael H Kohn, Christian S Hardtke	A hyperactive quantitative trait locus allele of Arabidopsis BRX contributes to natural variation in root growth vigor.	Proceedings of the National Academy of Sciences of the United States of America	107(18)	8475-80	2010	BRXL5.P,BRXL4,BRXL1,BRXL2,BRXL3	OsBRXL5.P, OsBRXL5,OsBRXL4,OsBRXL1,OsBRXL2,OsBRXL3
33245	16043430	Kamiya T., Akahori T., Maeshima M.	Expression profile of the genes for rice cation/H+ exchanger family and functional analysis in yeast.	Plant & cell physiology	46(10)	1735-40	2005	CAX1C,CAX2,CAX1A,CAX3,CAX1B	OsCAX1c, CAX1c, CAX4, OsNCX5, OsNCX5.1, OsNCX5.2, NCX5,OsCAX2, CAX5, OsNCX7, OsNCX7.1, OsNCX7.2, NCX7, OsVCX2, OsOSCA1.2, OSCA1.2,OsCAX1a, CAX1a, CAX1, OsCAX1, OsNCX2, OsNCX2.1, OsNCX2.2, NCX2, OsVCAX1a,OsCAX3, CAX6, OsNCX9, OsNCX9.1, OsNCX9.2, NCX9,OsCAX1b, CAX1b, CAX3, OsNCX10, NCX10
33246	12753582	Lee J., Das A., Yamaguchi M., Hashimoto J., Tsutsumi N., Uchimiya H., Umeda M.	Cell cycle function of a rice B2-type cyclin interacting with a B-type cyclin-dependent kinase.	The Plant journal : for cell and molecular biology	34(4)	417-25	2003	CYCB2;2,CYCA1;1,CDKB2;1 ,CYCB2;1	cycB2;2 (=cycOs2), cycB2;2, cycOs2, CycB2;2, CycOs2, CYCB2-2, CYCOS2, CycB2-Os2, CYCB2, CycB2;os;2, OsCycB2;2, Orysa;CycB2;2, OsCYCOS2, Os;cycB2;2, CYCB2.2, OsCYCB2.2,CycA1;1, CycA1;os;1, Orysa;CycA1;1, CYCA2.3, OscycA1;1, CYCA1-1, OsCYCA1-1,Orysa;CDKB2;1, OsCDKB2;1, cdc2Os3, Oscdc20s-3, cdc20s-3, Orysa;CDKB;2, CYCB2.1, CDKB-2, OsCDKB-2,cycB2;1 (=cycOs1), cycB2;1, cycOs1, CycB2;1, CycOs1, CYCB2-1, CYCOS1, CycB2-Os1, CYCB2, CycB2;os;1, Orysa;CycB2;1, CycB2;os;1, OsCycB2;1
33247	11029700	M Yamaguchi, T Fabian, M Sauter, R P Bhalerao, J Schrader, G Sandberg, M Umeda, H Uchimiya	Activation of CDK-activating kinase is dependent on interaction with H-type cyclins in plants.	The Plant journal : for cell and molecular biology	24(1)	11-20	2000	CDKD;1,CYCH;1	CDKD;1, Orysa;CDKD;1, R2, OsR2, CAK R2, CDKD1;3 ,Os;cycH;1, Orasa;CycH1;1, cycH1, CYCH1 
33248		Yao S.G., Sonoda Y., Tsutsui T., Nakamura H., Ichikawa H., Ikeda A., Yamaguchi J.	Promoter analysis of OsAMt1 ; 2 and OsAMT1 ; 3 implies their distinct roles of nitrogen utilization in rice	Breeding Science	58	201-207	2008	AMT1;3	OsAMT1;3, AMT1-3, Osamt1-2, "OsAMT1,2", OsAMT1;2, OsAMT1.3, AMT1.2
33249	12803618	Kumar A., N. Silim S., Okamoto M., Y. Siddiqi M., D. M. Glass A.	Differential expression of three members of the AMT1 gene family encoding putative high-affinity NH4+ transporters in roots of Oryza sativa subspecies indica.	Plant, cell & environment	26(6)	907-914	2003	AMT1;1	OsAMT1;1, OsAMT1:1, OsAMT1, AMT1-1, AMT1, OsAMT1p, OsAMT1-1, Osamt1-1, "OsAMT1,1", OsAMT1.1, AMT1.1, FCO12
33250	16028114	Md Monowar Karim Khan, Jan A., Karibe H., Komatsu S.	Identification of phosphoproteins regulated by gibberellin in rice leaf sheath.	Plant Molecular Biology	58(1)	27-40	2005	GAPC	OsGapC3, OGapC3, OsGAPDH1, GAPDH1, OsGapC1
33251	16146529	Prasad K., Parameswaran S., Vijayraghavan U.	OsMADS1, a rice MADS-box factor, controls differentiation of specific cell types in the lemma and palea and is an early-acting regulator of inner floral organs.	The Plant journal : for cell and molecular biology	43(6)	915-28	2005	MADS4,RAG,LHS1,GH3-8,SPW1	OsMADS4, PI1, DLN140, OsDLN140,MADS3, OsMADS3, OsMADS3(t), RMADS222, RAG1, rf3,OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO, OsLHS1, OsLG3b, LG3b, qLGY3, LGY3, DLN80, OsDLN80, OLR, OsOLR, GW3p6, OsGW3p6, OsMADS1GW3p6, MADS1GW3p6, qLGY3/OsLG3b/GW3p6,OsGH3-8, OsMGH3, OsGH3.8, GH3.8, OsGH3-2,SPW1, spw1, MADS16, OsMADS16
33252	15629062	Zhang Y., Wang L.	The WRKY transcription factor superfamily: its origin in eukaryotes and expansion in plants.	BMC evolutionary biology	5	1	2005	WRKY34,WRKY45,WRKY40,WRKY23,WRKY110,WRKY31,WRKY89,WRKY49,WRKY106,WRKY114,WRKY117,WRKY62,WRKY118,WRKY13,WRKY43,WRKY66,WRKY107,WRKY65,WRKY5,WRKY72,WRKY109,WRKY69,WRKY116,WRKY53,WRKY111,WRKY42,WRKY37,WRKY71,WRKY94,WRKY102,WRKY73,WRKY27,WRKY58,WRKY15,WRKY14,WRKY104,WRKY75,WRKY32,WRKY52,WRKY74,WRKY55,WRKY80,WRKY9,WRKY68,WRKY20,WRKY95,WRKY54,WRKY82,WRKY105,WRKY115,WRKY12,WRKY2,WRKY21,WRKY26,WRKY29,WRKY112,WRKY46,WRKY16,WRKY11,WRKY25,WRKY35,WRKY64,WRKY28,WRKY39,WRKY57,WRKY24,WRKY17,WRKY8,WRKY10,WRKY19,WRKY60,WRKY3,WRKY96,WRKY30,WRKY90,WRKY108,WRKY70,WRKY67,WRKY87,WRKY4,WRKY113,WRKY79,WRKY77,WRKY6,WRKY51,WRKY61,WRKY84,WRKY22,WRKY7,WRKY1,WRKY50,WRKY48,WRKY47,WRKY76,WRKY18,WRKY88	OsWRKY34,OsWRKY45, OsWRKY45-1, OsWRKY45-2, WRKY45-1, WRKY45-2,OsWRKY40,OsWRKY23,OsWRKY110,OsWRKY31,OsWRKY89,OsWRKY49,OsWRKY106,OsWRKY114,OsWRKY117, DLN205, OsDLN205,OsWRKY62, OsWRKY62.1, OsWRKY62.2, XB10, OsWRKY62-1, OsWRKY62-2,OsWRKY118,OsWRKY13,OsWRKY43,OsWRKY66,OsWRKY107,OsWRKY65,OsWRKY5 ,OsWRKY72, WRKY-72,OsWRKY109,OsWRKY69,OsWRKY116,OsWRKY53, WRKY-53,OsWRKY111,OsWRKY42, WRKY-42,OsWRKY37,OsWRKY71, WRKY-71,OsWRKY94,OsWRKY102,OsWRKY73,OsWRKY27,OsWRKY58,OsWRKY15,OsWRKY14,OsWRKY104, CRPG32, OsCRPG32,OsWRKY75,OsWRKY32,OsWRKY52,OsWRKY74,OsWRKY55,OsWRKY80,OsWRKY9,OsWRKY68,OsWRKY20,OsWRKY95,OsWRKY54,OsWRKY82,OsWRKY105,OsWRKY115,OsWRKY12,OsWRKY2,OsWRKY21,OsWRKY26, OsWRKY59, DLN19, OsDLN19,OsWRKY29,OsWRKY112,OsWRKY46, WRKY91, OsWRKY91,OsWRKY16,OsWRKY11, Dlf1, OsWRKY11.1, OsWRKY11.2,OsWRKY25, OsWRKY44, WRKY44,OsWRKY35,OsWRKY64,OsWRKY28, DLN170, OsDLN170,OsWRKY39,OsWRKY57,OsWRKY24,OsWRKY17,OsWRKY8,OsWRKY10,OsWRKY19,OsWRKY60,OsWRKY3 ,OsWRKY96,OsWRKY30,OsWRKY90,OsWRKY108,OsWRKY70,OsWRKY67,OsWRKY87, OsSUSIBA2-like,OsWRKY4, WRKY122, OsWRKY122,OsWRKY113,OsWRKY79, WRKY-79,OsWRKY77, WRKY-77,OsWRKY6, WRKY-6, DLN103, OsDLN103,OsWRKY51,OsWRKY61, OsWRKY103, WRKY103,OsWRKY84,OsWRKY22,OsWRKY7,OsWRKY1, OsWRKY1v2,OsWRKY50,OsWRKY48,OsWRKY47,OsWRKY76, OsWRKY76.1, OsWRKY76.2, OsWRKY76.3,OsWRKY18,OsWRKY88
33253	16106749	Kun-Lu Wu, Ze-Jian Guo, Hai-Hua Wang, Li J.	The WRKY family of transcription factors in rice and Arabidopsis and their origins.	DNA research : an international journal for rapid publication of reports on genes and genomes	12(1)	9-26	2005	WRKY69,WRKY34,WRKY66,WRKY109,WRKY62,WRKY40,WRKY72,WRKY89,WRKY1,WRKY123,WRKY67,WRKY121,WRKY31,WRKY9,WRKY49,WRKY5,WRKY45,WRKY35,WRKY41,WRKY116,WRKY23,WRKY16,WRKY13,WRKY37,WRKY94,WRKY73,WRKY27,WRKY15,WRKY96,WRKY55,WRKY104,WRKY75,WRKY74,WRKY32,WRKY52,WRKY114,SGSD3,WRKY108,WRKY17,WRKY76,WRKY20,WRKY95,WRKY112,WRKY82,WRKY107,WRKY115,WRKY28,WRKY119,WRKY21,WRKY2,WRKY8,WRKY26,WRKY29,WRKY11,WRKY24,WRKY57,WRKY47,WRKY19,WRKY65,WRKY22,WRKY60,WRKY12,WRKY30,WRKY54,WRKY124,WRKY14,WRKY3,WRKY97,WRKY70,WRKY25,WRKY64,WRKY39,WRKY4,WRKY79,WRKY113,WRKY6,WRKY71,WRKY84,WRKY51,WRKY7,WRKY42,WRKY61,WRKY102,WRKY50,WRKY90,WRKY80,WRKY48,WRKY77,WRKY87,WRKY111,WRKY10,WRKY68,WRKY53,WRKY46,WRKY88,WRKY43,WRKY120	OsWRKY69,OsWRKY34,OsWRKY66,OsWRKY109,OsWRKY62, OsWRKY62.1, OsWRKY62.2, XB10, OsWRKY62-1, OsWRKY62-2,OsWRKY40,OsWRKY72, WRKY-72,OsWRKY89,OsWRKY1, OsWRKY1v2,OsWRKY123, DLN183, OsDLN183,OsWRKY67,OsWRKY121,OsWRKY31,OsWRKY9,OsWRKY49,OsWRKY5 ,OsWRKY45, OsWRKY45-1, OsWRKY45-2, WRKY45-1, WRKY45-2,OsWRKY35,OsWRKY41, WRKY63, OsWRKY63,OsWRKY116,OsWRKY23,OsWRKY16,OsWRKY13,OsWRKY37,OsWRKY94,OsWRKY73,OsWRKY27,OsWRKY15,OsWRKY96,OsWRKY55,OsWRKY104, CRPG32, OsCRPG32,OsWRKY75,OsWRKY74,OsWRKY32,OsWRKY52,OsWRKY114,OsWRKY36, WRKY36, OsSGSD3,OsWRKY108,OsWRKY17,OsWRKY76, OsWRKY76.1, OsWRKY76.2, OsWRKY76.3,OsWRKY20,OsWRKY95,OsWRKY112,OsWRKY82,OsWRKY107,OsWRKY115,OsWRKY28, DLN170, OsDLN170,OsWRKY119,OsWRKY21,OsWRKY2,OsWRKY8,OsWRKY26, OsWRKY59, DLN19, OsDLN19,OsWRKY29,OsWRKY11, Dlf1, OsWRKY11.1, OsWRKY11.2,OsWRKY24,OsWRKY57,OsWRKY47,OsWRKY19,OsWRKY65,OsWRKY22,OsWRKY60,OsWRKY12,OsWRKY30,OsWRKY54,OsWRKY124,OsWRKY14,OsWRKY3 ,OsWRKY97,OsWRKY70,OsWRKY25, OsWRKY44, WRKY44,OsWRKY64,OsWRKY39,OsWRKY4, WRKY122, OsWRKY122,OsWRKY79, WRKY-79,OsWRKY113,OsWRKY6, WRKY-6, DLN103, OsDLN103,OsWRKY71, WRKY-71,OsWRKY84,OsWRKY51,OsWRKY7,OsWRKY42, WRKY-42,OsWRKY61, OsWRKY103, WRKY103,OsWRKY102,OsWRKY50,OsWRKY90,OsWRKY80,OsWRKY48,OsWRKY77, WRKY-77,OsWRKY87, OsSUSIBA2-like,OsWRKY111,OsWRKY10,OsWRKY68,OsWRKY53, WRKY-53,OsWRKY46, WRKY91, OsWRKY91,OsWRKY88,OsWRKY43,OsWRKY120
33254		Christian A. Ross Yue Liu Qingxi J. Shen	The WRKY Gene Family in Rice (Oryza sativa)	Journal of integrative plant biology	49(6)	827-842	2007	WRKY19,WRKY34,WRKY125,WRKY37,WRKY23,WRKY40,WRKY72,WRKY123,WRKY69,WRKY121,WRKY45,WRKY107,WRKY71,WRKY8,WRKY49,WRKY5,WRKY31,WRKY35,WRKY1,WRKY116,WRKY13,WRKY70,WRKY62,WRKY111,WRKY57,WRKY53,WRKY55,WRKY77,WRKY94,WRKY51,WRKY102,WRKY104,WRKY73,WRKY22,WRKY27,WRKY90,WRKY58,WRKY14,WRKY15,WRKY42,WRKY75,WRKY74,WRKY114,WRKY32,SGSD3,WRKY52,WRKY80,WRKY48,WRKY113,WRKY65,WRKY68,WRKY41,WRKY20,WRKY95,WRKY82,WRKY54,WRKY81,WRKY115,WRKY9,WRKY96,WRKY24,WRKY2,WRKY28,WRKY21,WRKY29,WRKY10,WRKY16,WRKY112,WRKY60,WRKY3,WRKY4,WRKY39,WRKY124,WRKY64,WRKY97,WRKY66,WRKY108,WRKY67,WRKY87,WRKY89,WRKY25,WRKY79,WRKY17,WRKY6,WRKY84,WRKY61,WRKY109,WRKY7,WRKY47,WRKY50,WRKY11,WRKY26,WRKY76,WRKY30,WRKY46,WRKY88,WRKY43,WRKY12	OsWRKY19,OsWRKY34,OsWRKY125,OsWRKY37,OsWRKY23,OsWRKY40,OsWRKY72, WRKY-72,OsWRKY123, DLN183, OsDLN183,OsWRKY69,OsWRKY121,OsWRKY45, OsWRKY45-1, OsWRKY45-2, WRKY45-1, WRKY45-2,OsWRKY107,OsWRKY71, WRKY-71,OsWRKY8,OsWRKY49,OsWRKY5 ,OsWRKY31,OsWRKY35,OsWRKY1, OsWRKY1v2,OsWRKY116,OsWRKY13,OsWRKY70,OsWRKY62, OsWRKY62.1, OsWRKY62.2, XB10, OsWRKY62-1, OsWRKY62-2,OsWRKY111,OsWRKY57,OsWRKY53, WRKY-53,OsWRKY55,OsWRKY77, WRKY-77,OsWRKY94,OsWRKY51,OsWRKY102,OsWRKY104, CRPG32, OsCRPG32,OsWRKY73,OsWRKY22,OsWRKY27,OsWRKY90,OsWRKY58,OsWRKY14,OsWRKY15,OsWRKY42, WRKY-42,OsWRKY75,OsWRKY74,OsWRKY114,OsWRKY32,OsWRKY36, WRKY36, OsSGSD3,OsWRKY52,OsWRKY80,OsWRKY48,OsWRKY113,OsWRKY65,OsWRKY68,OsWRKY41, WRKY63, OsWRKY63,OsWRKY20,OsWRKY95,OsWRKY82,OsWRKY54,OsWRKY81, OsWRKY33,OsWRKY115,OsWRKY9,OsWRKY96,OsWRKY24,OsWRKY2,OsWRKY28, DLN170, OsDLN170,OsWRKY21,OsWRKY29,OsWRKY10,OsWRKY16,OsWRKY112,OsWRKY60,OsWRKY3 ,OsWRKY4, WRKY122, OsWRKY122,OsWRKY39,OsWRKY124,OsWRKY64,OsWRKY97,OsWRKY66,OsWRKY108,OsWRKY67,OsWRKY87, OsSUSIBA2-like,OsWRKY89,OsWRKY25, OsWRKY44, WRKY44,OsWRKY79, WRKY-79,OsWRKY17,OsWRKY6, WRKY-6, DLN103, OsDLN103,OsWRKY84,OsWRKY61, OsWRKY103, WRKY103,OsWRKY109,OsWRKY7,OsWRKY47,OsWRKY50,OsWRKY11, Dlf1, OsWRKY11.1, OsWRKY11.2,OsWRKY26, OsWRKY59, DLN19, OsDLN19,OsWRKY76, OsWRKY76.1, OsWRKY76.2, OsWRKY76.3,OsWRKY30,OsWRKY46, WRKY91, OsWRKY91,OsWRKY88,OsWRKY43,OsWRKY12
33255		Obara M., Takeda T., Hayakawa T., Yamaya T.	Mapping quantitative trait loci controlling root length in rice seedlings grown with low or sufficient NH+4 supply using backcross recombinant lines derived from a cross between Oryza sativa L. and Oryza glaberrima Steud	Soil Science and Plant Nutrition	57	80-92	2011	AMT1;3,GS2,AMT2;3,GLN1;3,AMT1;2,GDH2,AMT1;1,GLT2,AMT2;2,GLT1,GLN1;2,GDH3,GDH1,AMT3;1,GLN1;1,GOT1,AMT2;1,AMT3;3,AMT3;2,ABC1,ASN,ASN1	OsAMT1;3, AMT1-3, Osamt1-2, "OsAMT1,2", OsAMT1;2, OsAMT1.3, AMT1.2,OsGS2, GLN2, OsGLN2, RGS31, OsRGS31,OsAMT2;3, AMT2;3, OsAMT2.3,OsGLN1;3, OsGS1;3, GS1;3,OsAMT1;2, AMT1-2, Osamt1-3, "OsAMT1,3", OsAMT1;3, OsAMT1.3, OsAMT1.2, AMT1.2,OsGDH2,OsAMT1;1, OsAMT1:1, OsAMT1, AMT1-1, AMT1, OsAMT1p, OsAMT1-1, Osamt1-1, "OsAMT1,1", OsAMT1.1, AMT1.1, FCO12,OsGLT2, OsNADH-GOGAT2, NADH-GOGAT2, OsGOGAT2, GOGAT2, OsGLU2, GLU2,OsAMT2;2, AMT2;2, OsAMT2.2,OsGLT1, OsNADH-GOGAT1, NADH-GOGAT1, OsNADH-GOGAT, GOGAT, NADH-GOGAT, OsGOGAT1, GOGAT1, OsGLU1,OsGLN1;2, GSr, RGS8, OsGS1;2, GS1;2, GS1, OsGS1-2, GS1-2, OsGS1.2, GS1.2,OsGDH3,OsGDH1,OsAMT3;1, AMT3-1, OsAMT3.1, OsAMT2;2,OsGLN1;1, GS1, RGS28, OsGS1;1, GS1;1, OsGS, GS1, OsGS1, GLN1-1, OsGS1-1, GS1-1, GS1.1, OsGS1.1,Got1, Aat1, OsAAT, GOT-A,OsAMT2;1, AMT2-1, OsAMT2.1, AMT2.1,OsAMT3;3, AMT3;3, OsAMT3.3,AMT3;2, OsAMT3;2, OsAMT3.2,OsABC1, SPL32, OsSPL32, OsGLU, OsFd-GOGAT, Fd-GOGAT, ABC1/ OsFd-GOGAT ,OsASN2, OsAS, OsAS2, AS2,OsASN1, OsAS1, AS1
33256	21322560	Chuang H.H., Chen P.T., Wang W.N., Chen Y.T., Shaw J.F.	Functional proteomic analysis of rice bran esterases/lipases and characterization of a novel recombinant esterase	Journal of agricultural and food chemistry	59	2019-2025	2011		
33258	21318489	Ouyang S.Q., He S.J., Liu P., Zhang W.K., Zhang J.S., Chen S.Y.	The role of tocopherol cyclase in salt stress tolerance of rice (Oryza sativa)	Science China Life Sciences	54	181-188	2011	VTE1	OsVTE1
33259	21269485	Singh U., Deb D., Singh A., Grover A.	Glycine-rich RNA binding protein of Oryza sativa inhibits growth of M15 E. coli cells	BMC research notes	4	-	2011	_,_	OsGR-RBP4,OsFKBP20
33260	21528404	Mallikarjuna G., Mallikarjuna K., Reddy M.K., Kaul T.	Expression of OsDREB2A transcription factor confers enhanced dehydration and salt stress tolerance in rice (Oryza sativa L.)	Biotechnology letters	33	1689-1697	2011	DREB2A,_	OsDREB2A, OsDREB2a, ERF40, OsERF#040, OsERF040, OsERF40, AP2/EREBP#167, AP2/EREBP167,DREB2B
33261	21213008	Mustafiz A., Singh A.K., Pareek A., Sopory S.K., Singla-Pareek S.L.	Genome-wide analysis of rice and Arabidopsis identifies two glyoxalase genes that are highly expressed in abiotic stresses	Functional and Integrative Genomics	11	293-305	2011	GLYII-2,GLYI1,GLYI6,GLYI3,GLYI5,GLYI7,GLYI-11,GLYI2,GLYI9,GLYI10,GLYII-1,GLYII-3,GLYI8,GLYI4	OsGLYII2, GLYII2, OsGLYII-2,OsGLYI1,OsGLYI6, OsGLYI6.1, OsGLYI6.2, OsGLYI6.3, OsGLYI6.4, OsGLYI6.5,OsGLYI3,OsGLYI5,OsGLYI7, OsGLYI7.1, OsGLYI7.2,OsGLYI11, GLYI11, OsGLYII1.1, OsGLYI11.2, OsGLYI11.3, OsGLYI-11.2, Glb33,OsGLYI2,OsGLYI9, OsGLYI9.1, OsGLYI9.2,OsGLYI10, OsEnS-113,OsGLYII1, GLYII1, OsETHE1, ETHE1, OsGLYII-1,OsGLYII3, GLYII3, gly II, OsGLYII-3,OsGLYI8, OsGLYI-8, GLYI-8,OsGLYI4
33262		NegrBo S., Almadanim C., Pires I., McNally K.L., Oliveira M.M.	Use of EcoTILLING to identify natural allelic variants of rice candidate genes involved in salinity tolerance	Plant Genetic Resources: Characterisation and Utilisation	9	300-304	2011		
33263		Negi D.S., Kumar A., Sharma R.K., Shukla N., Negi N., Tamta M.L., Bansal Y., Prasert P.-g., Cairns J.R.K.	Structure confirmation of rare conjugate glycosides from Glycosmis arborea (Roxb.) with the action of -glucosidases	Research Journal of Phytochemistry	5	32-40	2011		
33264		Hu Y., Chang C., Xu G., Wang T.	Light restored root growth of Arabidopsis with constitutive ethylene response	Acta Physiologiae Plantarum	33	667-674	2011	ERF93	OsERF1, ERF1, OsERF#093, OsERF093, OsERF93, AP2/EREBP#168, AP2/EREBP168
33265		Bihani P., Char B., Bhargava S.	Transgenic expression of sorghum DREB2 in rice improves tolerance and yield under water limitation	Journal of Agricultural Science	149	95-101	2011		
33266	21481190	Al Atalah B., Fouquaert E., Vanderschaeghe D., Proost P., Balzarini J., Smith D.F., RougH P., Lasanajak Y., Callewaert N., Van Damme E.J.M.	Expression analysis of the nucleocytoplasmic lectin 'Orysata' from rice in Pichia pastoris	FEBS Journal	278	2064-2079	2011		
33267	21494323	Qian D., Jiang L., Lu L., Wei C., Li Y.	Biochemical and structural properties of cyanases from Arabidopsis thaliana and Oryza sativa	PLoS One	6	-	2011	CYN	OsCYN
33268		Kakeda K., Ishihara N., Izumi Y., Sato K., Taketa S.	Expression and functional analysis of the barley Nud gene using transgenic rice	Breeding Science	61	35-42	2011	ERF3,ERF1	Os02ERF, OsSHN1, OsWR1, WR1, OsERF#003, OsERF003, OsERF3, AP2/EREBP#012, AP2/EREBP12,Os06ERF, OsWR2, WR2, OsERF#001, OsERF001, OsERF1, AP2/EREBP#057, AP2/EREBP57, RD1, OsSHN, SHN
33269	21251109	Okuyama Y., Kanzaki H., Abe A., Yoshida K., Tamiru M., Saitoh H., Fujibe T., Matsumura H., Shenton M., Galam D.C., Undan J., Ito A., Sone T., Terauchi R.	A multifaceted genomics approach allows the isolation of the rice Pia-blast resistance gene consisting of two adjacent NBS-LRR protein genes	Plant Journal	66	467-479	2011	RGA4,_,PIA,_,_,_,_,_,_,_,_,_,_,RGA5,_	Os11gRGA4, OsRGA4, Pias-1,Os11gRGA12,Pi a, Pia, Pi-a, Pia-1, Pia-2,Os11gRGA3,SasPKA1, PKA1,Os11gRGA1,Os11gRGAC,Os11gRGA2,Os11gRGA6,Os11gRGA7,Os11gRGA10,Os11gRGA9,Os11gRGA8,Os11gRGA5, OsRGA5, RGA5-A, RGA5-B, Pi5, Pias-2,Os11gRGA11
33271	21670506	Oda K., Otani M., Uraguchi S., Akihiro T., Fujiwara T.	Rice ABCG43 is Cd inducible and confers Cd tolerance on yeast	Bioscience, Biotechnology and Biochemistry	75	1211-1213	2011	IRT2,PDR5,GCC7	OsIRT2, OsIRT1, OsZIP15, ZIP15,ABCG43, OsABCG43, ABCG43/PDR5, OsPDR5,HMA3, OsHMA3, OsHMA3a, OsHMA3n, osHMA3, OsHMP34, HMP34
33272	21558459	Yang R., Tang Q., Wang H., Zhang X., Pan G., Wang H., Tu J.	Analyses of two rice (Oryza sativa) cyclin-dependent kinase inhibitors and effects of transgenic expression of OsiICK6 on plant growth and development	Annals of botany	107	1087-1101	2011		
33273	21521631	Sansenya S., Opassiri R., Kuaprasert B., Chen C.J., Ketudat Cairns J.R.	The crystal structure of rice (Oryza sativa L.) Os4BGlu12, an oligosaccharide and tuberonic acid glucoside-hydrolyzing -glucosidase with significant thioglucohydrolase activity	Archives of biochemistry and biophysics	510	62-72	2011		
33274		Zhang F.T., Wang P.R., Sun C.H., Wang B., Li X.L., Zhu J.Q., Gao X.L., Deng X.J.	Fine mapping and candidate gene analysis of the dwarf gene d162(t) in rice (Oryza sativa L.)	Genes and Genomics	33	25-30	2011		
33275	21221128	Che L., Tang D., Wang K., Wang M., Zhu K., Yu H., Gu M., Cheng Z.	OsAM1 is required for leptotene-zygotene transition in rice	Cell research	21	654-665	2011		
33276	21205187	Shen P., Wang R., Jing W., Zhang W.	Rice Phospholipase D is Involved in Salt Tolerance by the Mediation of H+-ATPase Activity and Transcription	Journal of integrative plant biology	53	289-299	2011	PLDalpha2,PLDalpha1,_,_,_,PLDalpha4,PLDALPHA3,PLDbeta1,PLDalpha5	OsPLDalpha2, OsC2DP43, C2DP43,RPLD1, PLD1, OsPLDalpha1, OsC2DP2, C2DP2,OsVHA-A,OSA1,OSA2,OsPLDalpha4, RPLD3, OsPLDeta2, OsC2DP50, C2DP50,OsPLDalpha3, RPLD2, PLDalpha3, OsPLDeta1, PLD2, OsC2DP52, C2DP52,OsPLDbeta1, OsC2DP79, C2DP79,OsPLDalpha5, RPLD4, OsPLDeta3, OsC2DP51, C2DP51
33277	21324151	Ruan S.L., Ma H.S., Wang S.H., Fu Y.P., Xin Y., Liu W.Z., Wang F., Tong J.X., Wang S.Z., Chen H.Z.	Proteomic identification of OsCYP2, a rice cyclophilin that confers salt tolerance in rice (Oryza sativa L.) seedlings when overexpressed	BMC Plant Biology	11	-	2011	NOE1,SODCC2,LRT2,_,SODA1,APX7,SODB,APX3,APX1	CATC, OsCat, OsCatC, OsCATC, OsNOE1, noe1, catC, OsCATC, CAT3, OsCAT3, LLM9428, OsLLM9428,Cu/Zn-SOD, Cu/Zn- SOD, OsCu-ZnSOD2, Cu-ZnSOD2, OsSODB, OsSOD3, SodCc2, Os SodCc2, sodB, OsSodB, RSODB, OssodCc1, OsCSD1.1, CSD1.1, OsCDS1, OsSOD3-CU/Zn, SOD3-CU/Zn, CuZnSOD2, Cu/ZnSOD2, OsCu/ZnSOD2, OsCSD1, CSD1, CuZnSOD1, OsCuZnSOD2, OsCSD4, CSD4, OsCSD3, CSD3, Cu/Zn-SOD3,CYC2, cyc2*, cyc2, OsCYP2, Cyp2, OsCYP19-2, CYP19-2, OsCYP-2, OsCyp2-P, OsCyp2, OsCYP19-1, LRT2/OsCYP2, lrt2*, lrt2, Ppcti ,OsCatC, CatC, OsCAT, OsCAT1, CAT1,SodA1, OsSODA1, Mn-SOD, Mn- SOD, OsMSD, MnSOD, OsMnSOD, MnSOD1, OsMnSOD1,OsAPx7, OsAPx07, OSAPX7, APx7, sAPX,SodB, Fe-SOD, Fe- SOD, OsFe-SOD, Fe+-SOD, OsFe+-SOD, OsFe-SODa, OsFe-SODb, OsFeSODb, FeSODb, OsFSD1.2, FSD1.2, FeSOD2, OsFSD2, FSD2, OsFSD1, FSD1, ALM1, OsALM1,OsAPx3, OsAPx03, OSAPX3, APx3, mAPX,OsAPX1, APXa, OsAPXa, OsAPx01, OsAPx1, OSAPX1, APx1, cAPX, APX2, cAPXa, OscAPXa
33278	21899054	Hu T.Z., He S., Huang X.Y., Deng L., Wang G.X.	Cloning, molecular characterization and heterologous expression of a glutathione S-transferase gene in rice	Russian Journal of Bioorganic Chemistry	37	344-350	2011	GSTL2,GSTL3,GSTL1	OsGSTL2, GSTZ5, OsGSTZ5,OsGSTL3,OsGSTL1, GST1
33279	21360613	Xiang H., Takeuchi H., Tsunoda Y., Nakajima M., Murata K., Ueguchi-Tanaka M., Kidokoro S.I., Kezuka Y., Nonaka T., Matsuoka M., Katoh E.	Thermodynamic characterization of OsGID1-gibberellin binding using calorimetry and docking simulations	Journal of Molecular Recognition	24	275-282	2011	GID1	gid1, OsGID1, Thl, Os GID1
33280	21595879	Campos-Soriano L., GRmez-Ariza J., Bonfante P., San Segundo B.	A rice calcium-dependent protein kinase is expressed in cortical root cells during the presymbiotic phase of the arbuscular mycorrhizal symbiosis	BMC Plant Biology	11	-	2011	CDPK18,CDPK4	OsCDPK18, OsCPK18, CDPK5, OsCDPK5, CPK18,OsCDPK4, OsCPK4, CPK4, CDPK1
33281		Park S.H., Yun D.W., Lee G.S., Yoon, Ung-Han, Ji H.S., Ahn B.O., Park S.C., Kim Y.H., Kim Y.K., Kim C.K.	Molecular and genetic characterization of osh6 (Oryza sativa homeobox 6) using dissociation (Ds) insertion mutant rice	African Journal of Biotechnology	10	1802-1811	2011	OSH6,RPBF,OSH15	OsH6, HOS16,OsDof3, OsDOF3, OsEnS-34, OsDof10, Dof10, OsDof-10, OsDOF1, DOF1, DOF3, OsRPBF, OsDOF7,OSH15, OsH15, OSKN3, Oskn3, HOS3, D6, d6, OSH15/Oskn3, HB253, H15, OsKNOX3, KNOX3
33284		Chen X.F., Gu Z.M., Liu F., Ma B.J., Zhang H.S.	Molecular Analysis of Rice CIPKs Involved in Both Biotic and Abiotic Stress Responses	Rice Science	18	1-9	2011		
33285		Lee D.G., Park K.W., An J.Y., Sohn Y.G., Ha J.K., Kim H.Y., Bae D.W., Lee K.H., Kang N.J., Lee B.H., Kang K.Y., Lee J.J.	Proteomics analysis of salt-induced leaf proteins in two rice germplasms with different salt sensitivity [ProtHomique des protHines foliaires induites par le sel chez deux variHtHs de riz esensibilitHvariable au sel.]	Canadian Journal of Plant Science	91	337-349	2011		
33286		Zhou Y., Niu X., Liu Y.	Cloning and genetic transformation of rice OsGPCR gene	Chinese Journal of Applied and Environmental Biology	17	7-11	2011	_	OsGPCR
33287		Yin X.M., Rocha P.S.C.F., Wang M.L., Zhu Y.X., Li L.Y., Song S.F., Xia X.	Rice Gene OsDSR-1 Promotes Lateral Root Development in Arabidopsis Under High-Potassium Conditions	Journal of Plant Biology	54	180-189	2011	_	OsDSR-1, DSR-1
33289	20978084	Wang X.F., He F.F., Ma X.X., Mao C.Z., Hodgman C., Lu C.G., Wu P.	OsCAND1 is required for crown root emergence in rice	Molecular plant	4	289-299	2011		
33291		Wang B., Zhu C., Liu X., Wang W., Ding H., Jiang M., Li G., Liu W., Yao F.	Fine Mapping of qHD4-1, a QTL Controlling the Heading Date, to a 20.7-kb DNA Fragment in Rice (Oryza sativa L.)	Plant Molecular Biology Reporter	29	702-713	2011		
33292	21221698	Kumar S., Asif M.H., Chakrabarty D., Tripathi R.D., Trivedi P.K.	Differential expression and alternative splicing of rice sulphate transporter family members regulate sulphur status during plant growth, development and stress conditions	Functional and Integrative Genomics	11	259-273	2011	SULTR5;1,SULTR1;3,SULTR3;5,LPA,SULTR2;1,SULTR3;1,SULTR3;6,SULTR5;2,SULTR2;2,SULTR1;1,SULTR1;2,SULTR3;2,SULTR4;1,SULTR3;4	OsSultr5;1, OsSul5;1, OsMOT1;2, MOT1;2,OsSultr1;3, OsSul1;3,OsSultr3;5, OsSul3;5,OsSultr3;3, OsSul3;3, SULTR3;3 ,OsSultr2;1, OsSul2;1, OsaSULTR2, SULTR2,OsSultr3;1, OsSul3;1,OsSultr3;6, OsSul3;6, OsSULTR3;6 ,OsSultr5;2, OsSul5;2, Os-MOT1;1, OsMOT1;1, MOT1;1, qGMo8, MOT1,OsSultr2;2, OsSul2;2, OsaSULTR2;1, SULTR2;1, OsSULTR2;1,OsSultr1;1, OsSul1;1, Sul1;1, OsSultr1;1(a), OsSultr1;1(b),OsSultr1;2, OsSul1;2,OsSultr3;2, OsSul3;2,OsSultr4;1, OsSul4;1, OsSultr4;1(a), OsSultr4;1(b), OsSultr4;1(c), OsSultr4;1(d),OsSultr3;4, OsSul3;4, OsaSULTR3;4, SPDT, OsSPDT
33293	21359958	Xu G.Y., Rocha P.S.C.F., Wang M.L., Xu M.L., Cui Y.C., Li L.Y., Zhu Y.X., Xia X.	A novel rice calmodulin-like gene, OsMSR2, enhances drought and salt tolerance and increases ABA sensitivity in Arabidopsis	Planta	234	47-59	2011	CAM1-1,CALA,_,CML23,CML19,CML31	OsCaM1, OsCam1-1, OsCaM1-1, CAM3, Cam1-1, OsCAM1.1, CAM1.1,CALa*, Cal1, CaM-2, CAM2, CAM, OsCaM2, OsCam2, OsCaM1, CaM1,OsCaM3, OsCam3, CaM3,OsCML23,OsCML19,OsCML31, OsMSR2, MSR2
33294	21676173	Sun A., Dai Y., Zhang X., Li C., Meng K., Xu H., Wei X., Xiao G., Ouwerkerk P.B., Wang M., Zhu Z.	A Transgenic Study on Affecting Potato Tuber Yield by Expressing the Rice Sucrose Transporter Genes OsSUT5Z and OsSUT2M	Journal of integrative plant biology	53	586-595	2011	SUT5,SUT2	OsSUT5(t), OsSUT5Z, OsSUT5,OsSUT2(t), SUT2M, OsSUT2, OsSUT2M, OsSUT5
33296		Redillas M.C.F.R., Strasser R.J., Jeong J.S., Kim Y.S., Kim J.K.	The use of JIP test to evaluate drought-tolerance of transgenic rice overexpressing OsNAC10	Plant Biotechnology Reports	5	169-175	2011	NAC122	OsNAC10, NAC10, ONAC122, NAC122, OsSNAC10, SNAC10
33297	21673515	Takanashi H., Ohnishi T., Mogi M., Hirata Y., Tsutsumi N.	DCL2 is highly expressed in the egg cell in both rice and Arabidopsis	Plant Signaling and Behavior	6	604-606	2011		
33298		Wang H., Makeen K., Yan Y., Cao Y., Sun S., Xu G.	OsSIZ1 Regulates the Vegetative Growth and Reproductive Development in Rice	Plant Molecular Biology Reporter	29	411-417	2011	SIZ1,SIZ2	OsSIZ1, OsSIZ1.1, OsSIZ1.2, OsSIZ1.3, DLN131, OsDLN131, OsPHD23, PHD23,OsSIZ2
33299	21760907	Li C., Huang L., Xu C., Zhao Y., Zhou D.X.	Altered levels of histone deacetylase OsHDT1 affect differential gene expression patterns in hybrid rice	PLoS One	6	-	2011		
33300		Zhang Y.X., Liu J.G., Chai T.Y., Jin L.	Advances in the uptake and translocation of silicon in plants	Progress in Biochemistry and Biophysics	38	400-407	2011	LSI1,LSI6,LSI2	lsi1, NIP2-1, OsNIP2;1, NIP2;1, OsLsi1, lsi(t), OsNIP2.1/OsLsi1/OsSIIT1, OsNIP2.1, NIP2.1,Lsi6, OsNIP2;2, NIP2-2, OsLsi6, OsNIP2.2/OsLsi6, OsNIP2.2, NIP2.2,Lsi2, SIET1, OsLsi2, OsSIET1
33301		Peng X.X., Tang X.K., Zhou P.L., Hu Y.J., Deng X.B., He Y., Wang H.H.	Isolation and Expression Patterns of Rice WRKY82 Transcription Factor Gene Responsive to Both Biotic and Abiotic Stresses	Agricultural Sciences in China	10	893-901	2011		
33302	21220781	Feng H., Yan M., Fan X., Li B., Shen Q., Miller A.J., Xu G.	Spatial expression and regulation of rice high-affinity nitrate transporters by nitrogen and carbon status	Journal of Experimental Botany	62	2319-2332	2011		
33304	21178395	Kumar K., Rao K.P., Biswas D.K., Sinha A.K.	Rice WNK1 is regulated by abiotic stress and involved in internal circadian rhythm	Plant Signaling and Behavior	6	316-320	2011		
33306	21148627	Yan W.H., Wang P., Chen H.X., Zhou H.J., Li Q.P., Wang C.R., Ding Z.H., Zhang Y.S., Yu S.B., Xing Y.Z., Zhang Q.F.	A major QTL, Ghd8, plays pleiotropic roles in regulating grain productivity, plant height, and heading date in rice	Molecular plant	4	319-330	2011	HD5	Hd5(t)*, Hd5, qHD5, HAP3H, OsHAP3H, NF-YB, CBF-A, DTH8 , qHD5(t)*, Ghd8, Ghd8/DTH8, Lhd1, NF-YB11, OsNF-YB11, NFYB11, LH8, DTH8/Ghd8, RH8, DTH8/Ghd8/LHD1, CAR8, DTH8/Ghd8/ OsHAP3H, EF8, OsEF8
33307	21296585	Gimeno-Gilles C., Gervais M.L., Planchet E., Satour P., Limami A.M., Lelievre E.	A stress-associated protein containing A20/AN1 zing-finger domains expressed in Medicago truncatula seeds	Plant Physiology and Biochemistry	49	303-310	2011		
33308		Bhatti K.H., Ahmed N.U.D., Shah A., Iqbal M., Iqbal T., Jiahe W.	Transgenic tobacco with rice zinc-finger gene OsLOL2 exhibits an enhanced resistance against bacterial-wilt	Australasian Plant Pathology	40	133-140	2011	_,LOL2,_	OsLSD1,OsLOL2, OsLSD5, OsLOL5, LOL5,OsLOL1, OsSTA289, OsLSD1
33309		Kanneganti V., Gupta A.K.	RNAi mediated silencing of a wall associated kinase, OsiWAK1 in Oryza sativa results in impaired root development and sterility due to anther indehiscence	Physiology and Molecular Biology of Plants	17	65-77	2011	_,WAK1,WAK2	OsiWAK1, WAK1,OsWAK1, WAK-1,OsWAK2
33311	21451255	Lee S.K., Kim B.G., Kwon T.R., Jeong M.J., Park S.R., Lee J.W., Byun M.O., Kwon H.B., Matthews B.F., Hong C.B., Park S.C.	Overexpression of the mitogen-activated protein kinase gene OsMAPK33 enhances sensitivity to salt stress in rice (Oryza sativa L.)	Journal of biosciences	36	139-151	2011	_,_,MAP3,_	OsMAPK44,Oswjumk1,OsMAPK33, OsMPK14, OsMAPK2, OsMAP3, OsMAPK14, OsMPK3, MAPK33, MPK14, MAPK2, MAPK14, MPK3, OsMAPK3, MAPK3,OsMPK13, OsMAPK2, OsBIMK2, BIMK2, MPK13, MAPK2, OsMAPK17-2, MAPK17-2
33312		Liu Y., Xu J., Ding Y., Wang Q., Li G., Wang S.	Auxin inhibits the outgrowth of tiller buds in rice (Oryza sativa L.) by downregulating OsIPT expression and cytokinin biosynthesis in nodes	Australian Journal of Crop Science	5	169-174	2011		
33313	21127026	Ueno D., Koyama E., Yamaji N., Ma J.F.	Physiological, genetic, and molecular characterization of a high-Cd-accumulating rice cultivar, Jarjan	Journal of Experimental Botany	62	2265-2272	2011		
33314	21266036	Ricachenevsky F.K., Sperotto R.A., Menguer P.K., Sperb E.R., Lopes K.L., Fett J.P.	ZINC-INDUCED FACILITATOR-LIKE family in plants: Lineage-specific expansion in monocotyledons and conserved genomic and expression features among rice (Oryza sativa) paralogs	BMC Plant Biology	11	-	2011	TOM1,ZIFL2,ZIFL11,ZIFL13,ZIFL10,ZIFL5,ZIFL12,IRO2,ZIFL7,ZIFL1,ZIFL3,ZIFL8,ZIFL6,ZIFL9	OsTOM1, ZIFL4, OsZIFL4 ,OsZIFL2, Os-mfs1, mfs1,OsZIFL11,OsZIFL13,OsZIFL10, Os-mfs2, mfs2,OsZIFL5, OsTOM2, TOM2,OsZIFL12, OsVMT, VMT, OsVMT/OsZIFL12,OsIRO2, OsbHLH056, bHLH056, bHLH56, OsbHLH56,OsZIFL7, OsTOM3, TOM3,OsZIFL1,OsZIFL3,OsZIFL8,OsZIFL6,OsZIFL9
33315	15879704	Sang-Choon Lee, Mi-Yeon Lee, Soo-Jin Kim, Sung-Hoon Jun, An G., Seong-Ryong Kim	Characterization of an abiotic stress-inducible dehydrin gene, OsDhn1, in rice (Oryza sativa L.).	Molecules and cells	19(2)	212-8	2005	DHN1	LIP9, OsLIP9, lip9, DHN1, DIP1, OsDip1, OsLEA23, OsDhn1, COR410, OsLEA23/DIP1, DIP1/OsLEA23
33316	16267395	Jun-Hye Shin, Dong-Hoon Jeong, Min Chul Park, An G.	Characterization and transcriptional expression of the alpha-expansin gene family in rice.	Mol. Cells	20(2)	210-8	2005	EXPA1,EXPA2,EXPA3,EXPA28,EXPA7,EXPA29,EXPA4	OsEXP1, EXPA1, OsEXPA1, OsaEXPa1.16, RiExA,OsEXP2, OsEXP2(Os-EXP2), Os-EXP2, EXPA2, OsEXPA2, OsaEXPa1.23, RiExB, RiExC, Os-EXPA2,OsEXP3 (Os-EXP3), EXPA3, OsEXP3, Os-EXP3, OsaEXPa1.18, RiExD, Os-EXPA3, OsEXPA3,,OsEXPA7, EXP7, OsEXP7, OsaEXPa1.26,OsEXPA29,OsEXP4 (Os-EXP4), OsEXPA4, OsEXP4, Os-EXP4, OsaEXPa1.22
33317	15604683	Kende H., Bradford K., Brummell D., Hyung-Taeg Cho, Cosgrove D., Fleming A., Gehring C., Lee Y., Simon McQueen-Mason, Rose J., Laurentius A C J Voesenek	Nomenclature for members of the expansin superfamily of genes and proteins.	Plant Mol. Biol.	55(3)	311-4	2004	EXPA1,EXPA7,EXPA4,EXPA2	OsEXP1, EXPA1, OsEXPA1, OsaEXPa1.16, RiExA,OsEXPA7, EXP7, OsEXP7, OsaEXPa1.26,OsEXP4 (Os-EXP4), OsEXPA4, OsEXP4, Os-EXP4, OsaEXPa1.22,OsEXP2, OsEXP2(Os-EXP2), Os-EXP2, EXPA2, OsEXPA2, OsaEXPa1.23, RiExB, RiExC, Os-EXPA2
33318	21868603	Kubo T, Yoshimura A, Kurata N.	Hybrid male sterility in rice is due to epistatic interactions with a pollen killer locus.	Genetics.		1083-92.	2011	EFS,S24	,S24(t), S24(t)*, Sb, F5-Du
33319	21749035	Cao,Y., Wu,G., Wu,Y., Nie,S., Zhang,L. and Lu,C.	Characterization of the transgenic rice event TT51-1 and construction of a reference plasmid	J. Agric. Food Chem.	59(16)	8550-8559	2011		
33320	22077667	Gutjahr,C., Radovanovic,D., Geoffroy,J., Zhang,Q., Siegler,H., Chiapello,M., Casieri,L., An,K., An,G., Guiderdoni,E., Kumar Chellian,S., Sundaresan,V., Harrison,M.J. and Paszkowski,U.	The half-size ABC transporters STR1 and 2 are indispensable for mycorrhizal arbuscule formation in rice	Plant J.			2011	D17,_,D10,ABCG21,TRX26	d17(t), dwf14, d17, htd1, OsCCD7, CCD7, D17/HTD1, HTD1, OsHTD1, OsD17,STR2,d10(d15,d16), d16, d15, dwf9, d10, OsCCD8b, OsCCD8, CCD8, OsD10,OsABCG21, STR1, OsSTR1,OsTRXh3, TRXH3, OsTrx26, Trx26, antiSTR1, OsTDX, TDX
33321	16541127	Liu,X.P., Liu,X.Y., Zhang,J., Xia,Z.L., Liu,X., Qin,H.J. and Wang,D.W.	Molecular and functional characterization of sulfiredoxin homologs from higher plants	Cell Res.	16(3)	287-296	2006	_	OsSrx
33322	22019783	Li,Y., Fan,C., Xing,Y., Jiang,Y., Luo,L., Sun,L., Shao,D., Xu,C., Li,X., Xiao,J., He,Y. and Zhang,Q.	Natural variation in GS5 plays an important role in regulating grain size and yield in rice	Nat. Genet.	43(12)	1266-1269	2011	GW5,GS5	qSW5/GW5, GSE5, OsGSE5, OsGW5, qSW5,OsSCP26, SCP26, OsGS5
33323	22080596	Peng,J., Yu,J., Wang,H., Guo,Y., Li,G., Bai,G. and Chen,R.	Regulation of Compound Leaf Development in Medicago truncatula by Fused Compound Leaf1, a Class M KNOX Gene	Plant Cell			2011	_,_	FCL2,FCL1
33324	20082138	Peremarti,A., Bassie,L., Zhu,C., Christou,P. and Capell,T.	Molecular characterization of the Arginine decarboxylase gene family in rice	Transgenic Res.	19(5)	785-797	2010	ADC2,ADC1	ADCa, OsAdc2, OsADC2,OsADC1, ARGDC, ADC, OsAdc1
33325	21854475	Reagon,M., Thurber,C.S., Olsen,K.M., Jia,Y. and Caicedo,A.L.	The long and the short of it: SD1 polymorphism and the evolution of growth trait divergence in U.S. weedy rice	Mol. Ecol.			2011	SD1	sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2, OsPHQ1, OsPHq1, PHq1
33326	21969384	Sasaki,A., Yamaji,N., Xia,J. and Ma,J.F.	OsYSL6 Is Involved in the Detoxification of Excess Manganese in Rice	Plant Physiol.	157(4)	1832-1840	2011	YSL6	OsYSL6, OsYs8 
33327	21963665	Tabuchi,H., Zhang,Y., Hattori,S., Omae,M., Shimizu-Sato,S., Oikawa,T., Qian,Q., Nishimura,M., Kitano,H., Xie,H., Fang,X., Yoshida,H., Kyozuka,J., Chen,F. and Sato,Y.	LAX PANICLE2 of Rice Encodes a Novel Nuclear Protein and Regulates the Formation of Axillary Meristems	Plant Cell	23(9)	3276-3287	2011	MOC1,LAX2,LAX1	moc1, OsMOC1, OsGRAS-33, OsGRAS33, GRAS-33, GRAS33, GNP6, OsGNP6,OsLAX2, Gnp4/LAX2, Gnp4,lax, lax(lx), lx, OsbHLH123, bHLH123, OsLAX1, BOS1, OsBOS1
33328	21615687	Wei,R.X. and Ge,S.	Evolutionary history and complementary selective relaxation of the duplicated PI genes in grasses	J Integr Plant Biol	53(8)	682-693	2011	MADS4,MADS2	OsMADS4, PI1, DLN140, OsDLN140,OsMADS2, RMADS219, NMADS1, PI2, nmads1, DLN33, OsDLN33
33329	19015668	Weng,J., Gu,S., Wan,X., Gao,H., Guo,T., Su,N., Lei,C., Zhang,X., Cheng,Z., Guo,X., Wang,J., Jiang,L., Zhai,H. and Wan,J.	Isolation and initial characterization of GW5, a major QTL associated with rice grain width and weight	Cell Res.	18(12)	1199-1209	2008	GW5,_	qSW5/GW5, GSE5, OsGSE5, OsGW5, qSW5,GW5, OsGW5, qSW5
33330	0	Yau,C.P., Zhuang,C.X., Zee,S.Y. and Yip,W.K.	Expression of a microsporocyte-specific gene encoding dihydroflavonol 4-reductase-like protein is developmentally regulated during early microsporogenesis in rice	Sex. Plant Reprod.	18(2)	65-74	2005	RD,_,DFR3,_,_,_,ALDH3E1,_,CCR20,SRT701,NP1 ,MSP,DFR2 ,WDA1,_	Rd, DFR, OsDFR, OS-DFR, OsDFR1, DFR1, DFR-1,OS-CAD,OS-DFR3, OsDFR3, OsDFR7, DFR7,OS-QR,OS-NUC,OS-PYDK, Ospdhk, PDHK, PDK, OsPDK, Ospdhk2, pdhk2 OsHRK1, HRK1,OS-ALDH, OsALDH3E1,OS-RP2, LTPL2, OsLTPL2,OS-CCR, OsCCR, CCR, OsCCR20, OsCCR14, CCR14 ,osSRT701, OsSIRT701, OsSRT1, SRT1, OS-SIR2,OS-ACE, OsNP1, OsTMS18, TMS18,OsSub42, SUB42, OsSP2, OS-MSP, OsMSP,OsTKPR1, TKPR1, OsDFR2, OS-DFR2, OsDFR2A, DFR2A, OsCCRL1, CCRL1,OsWDA1, Wda1, wda1, OS-CER1, OsGL1-5,OS-RNAH, OsRH29
33331	0	Yu,J. and Ao,G.	Isolation and sequencing of a sulfur-rich 10 kDa prolamin gene from rice seeds	Nong Ye Sheng Wu Ji Shu Xue Bao	1(1)	38-42	1993		
33332	22085497	Zhang,H., Cao,Y., Zhao,J., Li,X., Xiao,J. and Wang,S.	A pair of orthologs of a leucine-rich repeat receptor kinase-like disease resistance gene family regulates rice response to raised temperature	BMC Plant Biol.	11	160	2011	TRKE	TRKe, Rke, NRKe, 9RKe 
33333	21726399	Shimono M., Koga H., Akagi A., Hayashi N., Goto S., Sawada M., Kurihara T., Matsushita A., Sugano S., Jiang C.J., Kaku H., Inoue H., Takatsuji H.	Rice WRKY45 plays important roles in fungal and bacterial disease resistance.	Mol. Plant Pathol.	13(1)	83-94	2012	WRKY45	OsWRKY45, OsWRKY45-1, OsWRKY45-2, WRKY45-1, WRKY45-2
33334	22500165	Ichitani K., Takemoto Y., Iiyama K., Taura S., Sato M.	Chromosomal Location of HCA1 and HCA2, Hybrid Chlorosis Genes in Rice	Int J Plant Genomics			2012	HCA2,HCA1	hca2,hca1
33335	22209874	Nakagawa H., Tanaka A., Tanabata T., Ohtake M., Fujioka S., Nakamura H., Ichikawa H., Mori M.	SHORT GRAIN 1 Decreases Organ Elongation and Brassinosteroid Response in Rice.	Plant Physiol.			2011	_,_,SG1	SGL1,,OsSG1, Sg1
33336		Hu T, Qv X, Xiao G ,Haung X	Enhanced tolerance to herbicide of rice plants by over-expression of a glutathione S-transferance	Mol Breeding	24	409-418	2009	GSTL1	OsGSTL1, GST1
33337	19640724	Yang X, Sun W, Liu JP, Liu YJ, Zeng QY.	Biochemical and physiological characterization of a tau class glutathione transferase from rice (Oryza sativa).	Plant Physiol Biochem.	47(11-12)	1061-8.	2009	GSTU17	OsGSTU17, OsGST23, GST23 
33338		Jingrui Wu, Carole L. Cramer, Kriton K. Hatzios	Characterization of two cDNAs encoding glutathione S-transferases in rice and induction of their transcripts by the herbicide safener fenclorim	Physiologia Plantarum	105(1)	02-108	1999	GSTF1,GSTF2	OsGSTF1, RGSI,OsGSTF2, RGSTII
33339		J. Rebouillat & A. Dievart & J. L. Verdeil & J. Escoute &G. Giese & J. C. Breitler & P. Gantet & S. Espeout &E. Guiderdoni & C. Perin	Molecular Genetics of Rice Root Development	Rice (N Y)	2	15-34	2009		
33340		Chhun T, Takeda S, Tsurumi S, Ichii M.	The effects of auxin on lateral root initiation and root gravitropism in a lateral rootless@mutant Lrt1 of rice (Oryza sativa L.).	Plant Growth Regul	39	61-70.	2003		
33341	14623941	Chhun T, Takeda S, Tsurumi S, Ichii M.	Interaction between two auxin-resistant mutants and their ffects on lateral root formation in rice (Oryza sativa L.).	J Exp Bot	54	2701-8.	2003		
33342		Debi RB, Mushika J, Takeda S, Miyao A, Hirochika H, Ichii M.	Isolation and characterization of a short lateral root utant in rice(Oryza sativa L.).	Plant Sci	165	895-903.	2003		
33343		Suzuki N, Takeda S, Ichii M.	Morphological and physiological characteristics of a root-hairless mutant in rice (Oryza sativa L.).	Plant Soil	255	9-17.	2003		
33345		Gaufichon L., Michele Reisdorf-Cren, Steven J. Rothstein, Chardon F., Suzuki A.	Biological functions of asparagine synthetase in plants.	Plant Science	179	141-153	2010	ASN1,ASN	OsASN1, OsAS1, AS1,OsASN2, OsAS, OsAS2, AS2
33346	10965944	Nakano K., Suzuki T., Hayakawa T., Yamaya T.	Organ and Cellular Localization of Asparagine Synthetase in Rice Plants.	Plant Cell Physiol.	41(7)	874	2000	ASN	OsASN2, OsAS, OsAS2, AS2
33347	21171885	Huang H., Huang L., Feng G., Wang S., Wang Y., Liu J., Jiang N., Yan W., Xu L., Sun P., Li Z., Pan S., Liu X., Xiao Y., Liu E., Dai L., Wang G.L.	Molecular mapping of the new blast resistance genes Pi47 and Pi48 in the durably resistant local rice cultivar Xiangzi 3150.	Phytopathology	101(5)	620-6	2011	PI47,PI48,PI43,PIZY,PI1,PIZ	Pi47, Pi47(t),Pi48, Pi48(t),Pi43, Pi43(t), Pi-43(t),Pi-zy, Pi-zy(t),Pi1, Pi-1, Pi1-5C, Pi1-6C,Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2
33348	22128137	Bentolila,S. and Stefanov,S.	A reevaluation of rice mitochondrial evolution based on the complete sequence of male-fertile and male-sterile mitochondrial genomes	Plant Physiol.	158(2)	996-1017	2012	_,RPS19,_,26S  rRNA,_,_,_,_,5S  rRNA,_,_,_,_,_,_,RPS7,_,_,_,_,_,_,_,_,_,_,RPS13,NAD4L,_,_,_,_,_,_,_,_,_,_,_,_,_,CCMC,_,_,_,_,_,_,_,_,_,_,_,RPS1,_,_,NAD9,RPL2,_,_,_,_,RPL16,NAD3,RPS12,_,_,_,_,RPS2,GSLm,_,_,_,_,_,RPS3,_,NAD5,NAD7,ORFX,NAD6,NAD2,NAD1,RPS4,_,_,NAD4,_,_	orf173c,rps19,orf164,rrn26,orf221,orf187, orf187-2,orf160b,orf313,rrn5,rrn18,trnI(CAT), trnI,trnD(GTC), trnD,trnN(GTT), trnN,trnK(TTT), trnK,orf25, atp4,rps7,orf490,trnM(CAT), trnM,orf161b,orf389,orf165b,trnH(GTG), trnH,trnP(TGG), trnP,trnW(CCA), trnW,orf153,rpl5, rpl5-1,rps13,nad4L,orf356,orf347,atp1, atp1-1, ATP1,orf579,orf1054,orf154,orf160,orf165, orf165-1,mat-r, mat-r-1,trnY(GTA), trnY,orf152a, orf152b,trnfM(CAT), trnfM,orf162, orf162-1,ccmC, orf240,nad3,trnQ,orf161c,trnV.p, pseudo-trnV, trnV,trnE(TTC), trnE,trnS(GGA), trnS,trnF(GAA), trnF,orf258, orf317,orf181,orf183,orf152b, orf152b-1, orf152,rps1, rps1a, rps1b, rps1-1,orf284, orf284-1,orf173, orf173-1, orf173b,nad9, nad9-1, CI-27kD, CI-27KD,rpl2,orf161,trnS(TGA), trnS,trnC(GCA), trnC,trnR(TCT), trnR,rpl16, pseudo-rpl16,nad3,rps12,orf224, orf224a, orf224b,orf176, orf173 ,ccmFc, ccmFc-1,coxI, COX1, cox1-1, cox1,rps2, orf483 ,orf241, OsGSLm, OsGSLmt, GSLmt,cox2, coxII,orfB, atp8 ,ccmFn, ccmFn-1,ccmB,orf160, orf160b ,rps3,atp9, RMtATP9, aatp9,nad5, OsNAD5,nad7,orfX,nad6,nad2, OsNAD2,nad1, Osnad1, nadI, nadIB,rps4,cob, cob-1, cob-like, cyt c,atp6, N-atp6, B-ATP6, B-atp6, atp6-1,nad4, nadIV,orf126,orf86d
33349	21621742	Chen,J., Shi,Y., Liu,W., Chai,R., Fu,Y., Zhuang,J. and Wu,J.	A Pid3 allele from rice cultivar Gumei2 confers resistance to Magnaporthe oryzae	J Genet Genomics	38(5)	209-216	2011	PID3	Pi-d3, Pid3, Pi25, Pid3-I1, qBRM6.2
33350	0	Fan,L., Gui,Y., Zheng,Y., Wang,Y., Cai,D. and You,X.	Ancient DNA sequences of rice from the Low Yangtze reveal significant genotypic divergence	Chin. Sci. Bull.			2012	KRP4	OsiICK6, Orysa;KRP4, OrysaICK6, Orysa;ICK6, OsKRP4, OsICK6, ICK6
33351	21954164	Gu,X.Y., Foley,M.E., Horvath,D.P., Anderson,J.V., Feng,J., Zhang,L., Mowry,C.R., Ye,H., Suttle,J.C., Kadowaki,K.I. and Chen,Z.	Association Between Seed Dormancy and Pericarp Color Is Controlled by a Pleiotropic Gene That Regulates Abscisic Acid and Flavonoid Synthesis in Weedy Red Rice	Genetics	189(4)	1515-1524	2011	RC	Rc, OsbHLH017, OsbHLH17, SD7-1, qSD7-1/qPC7, OsGL3C, GL3C
33352	22151303	Jiang,Y., Bao,L., Jeong,S.Y., Kim,S.K., Xu,C., Li,X. and Zhang,Q.	XIAO is involved in the control of organ size by contributing to the regulation of signaling and homeostasis of brassinosteroids and cell cycling in rice	Plant J.			2011	XIAO,MADS47,KRP1,CYCB2;1,CYCB1;1, LIC,MCM3,BU1	OsXIAO, OsCLV2e, CLV2e,OsMADS47, OsMDP1, MDP, MDP1,OsiICK1, Orysa;KRP1, OrysaICK1, Orysa;ICK1, CDKI, OsICK1, ICK1, OsKRP1,cycB2;1 (=cycOs1), cycB2;1, cycOs1, CycB2;1, CycOs1, CYCB2-1, CYCOS1, CycB2-Os1, CYCB2, CycB2;os;1, Orysa;CycB2;1, CycB2;os;1, OsCycB2;1,CycB1;1, CycB1;os;1, Orysa;CycB1;1, OsCycB1;1, CyclaZm, CYCIaZm, OsCYCIaZm, OsCYCB1;4,OsC3H46, C3H46, OsLIC, OsFLA6, FLA6,OsMCM3,ILI4, OsILI4 , OsBU1, BU1/ILI4, OsbHLH172, bHLH172
33353	21813465	Kwantes,M., Liebsch,D. and Verelst,W.	How MIKC* MADS-Box Genes Originated and Evidence for Their Conserved Function Throughout the Evolution of Vascular Plant Gametophytes	Mol. Biol. Evol.			2011	MADS63,MADS62,MADS68	OsMADS63,OsMADS62,OsMADS68
33354	22209962	Ling,L.Z.	Sequence variations and selection analysis of microRNA target genes involved in rice flower development	Gene			2011		
33355	0	Ramkumar,G., Biswal,A.K., Mohan,K.M., Sakthivel,K., Sivaranjani,A.K.P., Neeraja,C.N., Ram,T., Balachandran,S.M., Sundaram,R.M., Prasad,M.S., Rani,N.S., Viraktamath,B.C. and Madhav,M.S.	Identification of novel alleles of rice blast resistance genes Pik h and Pita through allele mining	Int Rice Res Notes	35	1-6	2010	PITA,PIKH	Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30, Trx30,Pi-kh, Pi k-h, Pi54, Pi54rh, Pi-k(h), Pik-h, Pikh
33356	21807436	Tang,Y., Li,M., Chen,Y., Wu,P., Wu,G. and Jiang,H.	Knockdown of OsPAO and OsRCCR1 cause different plant death phenotypes in rice	J. Plant Physiol.	168(16)	1952-1959	2011	EAS1 ,RCCR3,RCCR2,RCCR1	OsPAO, PAO, OsACD1, ACD1, OsEAS1, RCD2, OsRCD2,OsRCCR3,OsRCCR2, OsRCCR1, RCCR1,OsRCCR1, OsRCCR, RCCR
33357	0	Wu,G., Wu,Y., Nie,S., Zhang,L., Xiao,L., Cao,Y. and Lu,C.	Real-time PCR method for detection of the transgenic rice event TT51-1	Food Chem	119(1)	417-422	2010		
33358	22188563	Ye,J.W., Gong,Z.Y., Chen,C.G., Mi,H.L. and Chen,G.Y.	A Mutation of OSOTP 51 Leads to Impairment of PSI Complex Assembly and Serious Photo-damage in Rice	J Integr Plant Biol			2011	YCF3,SSA1	ORF170, ycf3, IRF170, ycf3-1, ycf3-2,OSOTP 51, OSOTP51, OTP51, OsOTP51, OsSSA1
33359	21880027	Yokosho,K., Yamaji,N. and Ma,J.F.	An Al-inducible MATE gene is involved in external detoxification of Al in rice	Plant J.	68(6)	1061-1069	2011	FRDL4,ZOS12-02	OsFRDL4, MATE,OsART1, STAR3, OsZOS12-02, ART1
33360	0	H.I. Oka	Report of study-tour to India for collection of rice, 1957				1957		
33361	0	H.I. Oka	Report of study-tour to Thailand for investigation of rice (1958)				1958		
33362	0	Tadao C. Katayama	Report on the rice collection trip to the Philippines and New Guinea (1961)				1961		
33363	0	H.I. Oka	Report of trip for investigation of rice in Latin American countries (1961)				1961		
33364	0	H.I. Oka, W.T. Chang	Joint report of collection trip to Mindanao, Philippines (1963)				1963		
33365	0	T. Tateoka, Juan V.  Pancho	Report on exploration for wild species of Oryza in the Philippines (1963)				1963		
33366	0	H.I. Oka, W.T. Chang	Observations of wild and cultivated rice species in Africa  --Report of trip from Sierra Leone to Tchad, 1963--				1963		
33367	0	Tadao C. Katayama	Report on the rice collection trip to Borneo and Java (1963)				1963		
33368	0	T. Tateoka	Report of explorations in East Africa and Madagascar (1964)				1964		
33369	0	H.I. Oka, H. Morishima, Y. Sano, T. Koizumi	Observation of rice species and accompanying savanna plants on the southern fringe of Sahara desert. Report of study-tour in West Africa, 1977				1977		
33370	0	H.I. Oka	An observation of wild rice species in Tropical Australia.  Report of trip, 1978				1978		
33371	0	H. Morishima, Y. Sano, H.I. Oka	Observations on wild and cultivated rices and companion weeds in the hilly areas of Nepal, India and Thailand.  Report of study-tour in Tropical Asia, 1979				1979		
33372	0	H. Morishima, Y. Shimamoto, Y. Sano, Y.I. Sato	Observations on wild and cultivated rices in Thailand for ecological-genetic study  --Report of study-tour in 1983--				1983		
33373	0	G. Second, A. Ghesquiere	Collection and observation of wild rice (Oryza) species in Western India.  Report of survey from October 1st to 28th, 1984				1984		
33374	0	H. Morishima, Y. Shimamoto, Y. Sano, Y.I. Sato	Trip to Indonesia and Thailand for the ecological genetic study in rice          --Report of study-tour in 1985/86--				1985/86		
33375	0	H. Morishima, Y. Shimamoto, T. Sato, H. Yamagishi, Y.I. Sato	Observations of wild and cultivated rices in Bhutan, Bangladesh and Thailand  --Report of study-tour in 1989/90--				1989/90		
33376	0	H. Morishima, Paulo S. Martins	Investigations of plant genetic resources in the Amazon basin with the emphasis on the genus Oryza --Report of 1992/93 Amazon Project--				1992/93		
33377	0	Y.I. Sato, K. Ando, S. Chitrakon, H. Morishima, T. Sato, Y. Shimamoto, H. Yamagishi,	Ecological-genetic studies on wild and cultivated rice in Tropical Asia (1994)				1994		
33381	0	Oka & Chang	Evolution		418-430	15	1961		
33384	0	Akihama and Watabe	The Alteration of Cultivated Rice in Thailand and Cambodia	Tonan Ajia Kenkyu (The southeast Studies)	8	337-346	1970		
33385	0		Ann. Rep. NIG 24 : 66-67,				1974		
33386	0		Ann. Rep. NIG 27 : 102-103,				1977		
33387	0		Ann. Rep. NIG 27 : 97 (Oka) & 101-102 (Sano),29 : 97-98 (Sano)				1977,1979		
33388	0		Can. J. Genet. Cytol. 10 : 527-535				1968		
33389	0	Akihama T., Toshimitsu K	Geographical distribution of morphological variation on wild rices in central and southern India.	Preliminary report Tottori University s Scientific Survey	Vol. 1 	48-59	1972		
33390	0	Hiko-Ichi Oka		Jpn. J. Genet. 	28 : 227-232 ,29 : 18-25, 53-67, 101-108 ,205-214		1953,1954		
33391	0	Hiko-Ichi Oka	Studies on Tetraploid Rice Rice VI. Fertility variation and segregation ratios for several characters in tetraploid hybrids of rice, Oryza saliva, L.	Cytologia	20	258-266	1955		
33392	0	G. Second	Field notes on a collection of wild rice species in Australia, May 1987.				1987		
33393	0	A. Borgel  et G. Second	Prospection des varietes traditionnelles et des especes sauvages de riz au Tchad et Cameroun. 1977.				1977		
33394	0	K. Miezan et G. Second	Prospection des varietes traditionnelles et des especes sauvages de riz en Tanzanie, 1979.				1979		
33395	24764503	Rice WRKY Working Group	Nomenclature report on rice WRKYs. -Conflict regarding gene names and its solution	Rice (N Y)	5	3	2012	WRKY23,WRKY35,WRKY45,WRKY66,WRKY53,WRKY25,WRKY84,WRKY69,WRKY85,WRKY55,WRKY74,WRKY109,WRKY124,WRKY7,WRKY82,WRKY112,WRKY90,WRKY14,WRKY86,WRKY5,WRKY104,WRKY108,WRKY34,SGSD3,WRKY61,WRKY37,WRKY114,WRKY75,WRKY81,WRKY99,WRKY18,WRKY19,WRKY10,WRKY49,WRKY73,WRKY40,WRKY71,WRKY70,WRKY62,WRKY123,WRKY32,WRKY3,WRKY88,WRKY117,WRKY6,WRKY94,WRKY56,WRKY54,WRKY46,WRKY83,WRKY106,WRKY9,WRKY31,WRKY51,WRKY67,WRKY98,WRKY79,WRKY97,WRKY64,WRKY27,WRKY110,WRKY78,WRKY8,WRKY29,WRKY26,WRKY16,WRKY65,WRKY60,WRKY50,WRKY39,WRKY121,WRKY95,WRKY119,WRKY13,WRKY4,WRKY120,WRKY52,WRKY1,WRKY105,WRKY30,WRKY72,WRKY115,WRKY58,WRKY87,WRKY89,WRKY15,WRKY24,WRKY38,WRKY43,WRKY21,WRKY118,WRKY11,WRKY107,WRKY116,WRKY42,WRKY76,WRKY96,WRKY111,WRKY113,WRKY12,WRKY17,WRKY102,WRKY2,WRKY68,WRKY125,WRKY57,WRKY41,WRKY33,WRKY28,WRKY47,WRKY77,WRKY80,WRKY20,WRKY48,WRKY22	OsWRKY23,OsWRKY35,OsWRKY45, OsWRKY45-1, OsWRKY45-2, WRKY45-1, WRKY45-2,OsWRKY66,OsWRKY53, WRKY-53,OsWRKY25, OsWRKY44, WRKY44,OsWRKY84,OsWRKY69,OsWRKY85,OsWRKY55,OsWRKY74,OsWRKY109,OsWRKY124,OsWRKY7,OsWRKY82,OsWRKY112,OsWRKY90,OsWRKY14,OsWRKY86, OsaLeg5, Leg5,OsWRKY5 ,OsWRKY104, CRPG32, OsCRPG32,OsWRKY108,OsWRKY34,OsWRKY36, WRKY36, OsSGSD3,OsWRKY61, OsWRKY103, WRKY103,OsWRKY37,OsWRKY114,OsWRKY75,OsWRKY81, OsWRKY33,OsWRKY99,OsWRKY18,OsWRKY19,OsWRKY10,OsWRKY49,OsWRKY73,OsWRKY40,OsWRKY71, WRKY-71,OsWRKY70,OsWRKY62, OsWRKY62.1, OsWRKY62.2, XB10, OsWRKY62-1, OsWRKY62-2,OsWRKY123, DLN183, OsDLN183,OsWRKY32,OsWRKY3 ,OsWRKY88,OsWRKY117, DLN205, OsDLN205,OsWRKY6, WRKY-6, DLN103, OsDLN103,OsWRKY94,OsWRKY56,OsWRKY54,OsWRKY46, WRKY91, OsWRKY91,OsWRKY83,OsWRKY106,OsWRKY9,OsWRKY31,OsWRKY51,OsWRKY67,OsWRKY98,OsWRKY79, WRKY-79,OsWRKY97,OsWRKY64,OsWRKY27,OsWRKY110,OsWRKY78,OsWRKY8,OsWRKY29,OsWRKY26, OsWRKY59, DLN19, OsDLN19,OsWRKY16,OsWRKY65,OsWRKY60,OsWRKY50,OsWRKY39,OsWRKY121,OsWRKY95,OsWRKY119,OsWRKY13,OsWRKY4, WRKY122, OsWRKY122,OsWRKY120,OsWRKY52,OsWRKY1, OsWRKY1v2,OsWRKY105,OsWRKY30,OsWRKY72, WRKY-72,OsWRKY115,OsWRKY58,OsWRKY87, OsSUSIBA2-like,OsWRKY89,OsWRKY15,OsWRKY24,OsWRKY38,OsWRKY43,OsWRKY21,OsWRKY118,OsWRKY11, Dlf1, OsWRKY11.1, OsWRKY11.2,OsWRKY107,OsWRKY116,OsWRKY42, WRKY-42,OsWRKY76, OsWRKY76.1, OsWRKY76.2, OsWRKY76.3,OsWRKY96,OsWRKY111,OsWRKY113,OsWRKY12,OsWRKY17,OsWRKY102,OsWRKY2,OsWRKY68,OsWRKY125,OsWRKY57,OsWRKY41, WRKY63, OsWRKY63,OsWRKY33,OsWRKY28, DLN170, OsDLN170,OsWRKY47,OsWRKY77, WRKY-77,OsWRKY80,OsWRKY20,OsWRKY48,OsWRKY22
33396	20955181	Luan W., Liu Y., Zhang F., Song Y., Wang Z., Peng Y., Sun Z.	OsCD1 encodes a putative member of the cellulose synthase-like D sub-family and is essential for rice plant architecture and growth	Plant Biotechnol. J.	9	513-524	2011		
33398	21249367	Li W., Zhou F., Liu B., Feng D., He Y., Qi K., Wang H., Wang J.	Comparative characterization, expression pattern and function analysis of the 12-oxo-phytodienoic acid reductase gene family in rice	Plant Cell Rep.	30	981-995	2011		
33399	21625436	Yang Q., He H., Li H., Tian H., Zhang J., Zhai L., Chen J., Wu H., Yi G., He Z.H., Peng X.	NOA1 functions in a temperature-dependent manner to regulate chlorophyll biosynthesis and rubisco formation in rice	PLoS ONE	6(5)	e20015	2011		
33400	21309868	Yu Z., Kang B., He X., Lv S., Bai Y., Ding W., Chen M., Cho H.T., Wu P.	Root hair-specific expansins modulate root hair elongation in rice	Plant Journal	66	725-734	2011		
33401	21497713	Bae H., Kim S.K., Cho S.K., Kang B.G., Kim W.T.	Overexpression of OsRDCP1, a rice RING domain-containing E3 ubiquitin ligase, increased tolerance to drought stress in rice (Oryza sativa L.)	Plant Science	180	775-782	2011		
33403	21153026	Hu T., He S., Yang G., Zeng H., Wang G., Chen Z., Huang X.	Isolation and characterization of a rice glutathione S-transferase gene promoter regulated by herbicides and hormones	Plant Cell Rep.	30	539-549	2011		
33404	21332845	Seo J.S., Joo J., Kim M.J., Kim Y.K., Nahm B.H., Song S.I., Cheong J.J., Lee J.S., Kim J.K., Choi Y.D.	OsbHLH148, a basic helix-loop-helix protein, interacts with OsJAZ proteins in a jasmonate signaling pathway leading to drought tolerance in rice	Plant Journal	65	907-921	2011		
33405	21255162	Kusano M., Tabuchi M., Fukushima A., Funayama K., Diaz C., Kobayashi M., Hayashi N., Tsuchiya Y.N., Takahashi H., Kamata A., Yamaya T., Saito K.	Metabolomics data reveal a crucial role of cytosolic glutamine synthetase 1;1 in coordinating metabolic balance in rice	Plant Journal	66	456-466	2011		
33406	21796433	Ono Y., Kim D.W., Watanabe K., Sasaki A., Niitsu M., Berberich T., Kusano T., Takahashi Y.	Constitutively and highly expressed Oryza sativa polyamine oxidases localize in peroxisomes and catalyze polyamine back conversion.	Amino Acids	42(2-3)	867-76	2012	PAO3,PAO7,PAO1,PAOA,PAO4,PAOB,PAO5	OsPAO3, OsAO3, AO3,OsPAO7, OsPAO3, PAO3,OsPAO1, OsAO4, AO4,PAOa, OsPAO2, PAO2, OsPAOa,OsPAO4, OsAO1, AO1,PAOb, OsPAOb, OsPAO6, OsPAO2, PAO6, PAO2,OsPAO5, OsAO2, AO2
33408	21737944	Okada K.	The biosynthesis of isoprenoids and the mechanisms regulating it in plants.	Biosci. Biotechnol. Biochem.	75(7)	1219-25	2011	CYP76M6,CYP71Z7,CYP76M5,_,CYP76M8,DXS3,BZIP37,CYP71Z6,CYP76M7	OsCYP76M6, OsCYP76-5, CYP76-5, OsCYP71T5, CYP71T5,Oscyp71Z7, OsCYP71Z6, CYP71Z6,OsCYP76M5, OsCYP76-2, CYP76-2, OsCYP71T4, CYP71T4,OsMASL,OsCYP76M8, OsCYP76-3, CYP76-3,OsDXS, OsDXS3, dxs3, DXS2, OsDXS2,OsTGAP1, TGAP1, OsbZIP37,Oscyp71Z6, OsCYP71Z5, CYP71Z5,OsCYP76M7, CYP76M10, OsCYP76M10, OsCYP76-4, CYP76-4
33409	21805151	Zhang Y., Xiao W., Luo L., Pang J., Rong W., He C.	Downregulation of ospk1, a cytosolic Pyruvate kinase, by T-DNA insertion causes dwarfism and panicle enclosure in rice.	Planta	235(1)	25-38	2012	_,_,PK1,PEPC1,PPC4,ALAAT,NADP-ME1	ALT-2, OsGGAT, GGAT,PEPCK, OsPEPCK,OsPK1,PEPC-1, Osppc1, ppc1,PEPC-2, Osppc4, ppc4,alaAT, ALT-1, OsAlaAT1, AlaAT1,NADP-ME, ME6, OschlME, chlME, XcrMal1
33410	21807632	Li P., Xue H.	Structural characterization and expression pattern analysis of the rice PLT gene family.	Acta Biochim. Biophys. Sin. (Shanghai)	43(9)	688-97	2011	PLT5,PLT8,PLT10,PLT2,PLT7,PLT6,PLT4,PLT3,PLT1,PLT9	OsPLT5, AP2/EREBP5, AP2/EREBP#005, BBM3, OsBBM3, BBM1, OsBBM1,OsPLT8, CRL5, OsCRL5, AP2/EREBP141, AP2/EREBP#141 ,OsPLT10, AP2/EREBP26, AP2/EREBP#026 ,OsPLT2, AP2/EREBP#060, AP2/EREBP60, HL6, OsHL6,OsPLT7, AP2/EREBP#088, AP2/EREBP88,OsPLT6, AP2/EREBP#118, AP2/EREBP118, BBM1, OsBBM1, OsBBML1, BBML1, OsASGR-BBML1, ASGR-BBML1,OsPLT4, AP2/EREBP#037, AP2/EREBP37, BBM4, OsBBM4,OsPLT3, AP2/EREBP#018, AP2/EREBP18, BBM2, OsBBM2,OsPLT1, AP2/EREBP#044, AP2/EREBP44, AINTEGUMENTA, OsAINTEGUMENTA,OsPLT9, AP2/EREBP#137, AP2/EREBP137, OsANT
33411	21821426	Guretzki S., Papenbrock J.	Characterization of the sulfurtransferase family from Oryza sativa L.	Plant Physiol. Biochem.	49(9)	1064-70	2011	STR12,STR19,HAC4,HAC1;2,STR2,STR9,STR16,STR24,STR22,ACR2.1,STR1,STR3,STR4,STR10,STR13,STR14,STR15,STR17,STR18,STR23,STR7,ACR2.2,HAC1;1 ,STR11	OsStr12, Str12, TROL, Os-TROL, OsTROL,OsStr19, OsPP126,OsStr8, STR8, OsHAC4,OsStr6, STR6, OsRhST, RLD, OsHAC1;2,OsStr2,OsStr9,OsStr16,OsStr24,OsStr22,CDC25.1, OsACR2.1, OsStr20, STR20,OsStr1,OsStr3,OsStr4,OsStr10,OsStr13,OsStr14,OsStr15,OsStr17,OsStr18,OsStr23,OsStr7,CDC25.2, OsACR2.2, OsStr21, STR21,OsStr5, STR5, OsHAC1;1,OsStr11, OsCAS, Cas
33412	21760907	Li C., Huang L., Xu C., Zhao Y., Zhou D.X.	Altered levels of histone deacetylase OsHDT1 affect differential gene expression patterns in hybrid rice.	PLoS ONE	6(7)	e21789	2011	EF1,HDT2,RFT1,SE1,HDT701,HD3A,GI,GHD7	Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,OsHDT2,FT-L 3, OsFTL3, FTL3, FT-L3, RFT, OsRFT1,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, OsHd1,  Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,OsHDT1, HDT701, OsHDT701, ZOS5-12, OsZOS5-12, HDT1,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,OsGI, Gi, Os-GI,Ghd2, Ghd7, OsGhd7, OsCCT26, OsCMF8, OsI, Ghd7/Hd4, Hd4, EH7-1/Hd4, Ghd7-0a, EH7-1, EH7/Ghd7, EH7, OsEH7, GLW7.1, OsGLW7.1
33413	21796369	Mulangi V., Phuntumart V., Aouida M., Ramotar D., Morris P.	Functional analysis of OsPUT1, a rice polyamine uptake transporter.	Planta	235(1)	1-11	2012	PUT1	OsPUT1, PUT, OsLAT1 
33414	21777365	Chen Y., Fan X., Song W., Zhang Y., Xu G.	Over-expression of OsPIN2 leads to increased tiller numbers, angle and shorter plant height through suppression of OsLazy1.	Plant Biotechnol. J.	10(2)	139-49	2012	SPK,LA1,PIN1C,LRA1	Spk(t), Spk(t)*), Spk, OsTAC1, TAC1, qTAC9 ,OsLa1,PIN1B, OsPIN1B, OsPIN1b, OsPIN1c,OsPIN2, PIN2, OsLRA1, WAR1, OsWAR1
33415	21734114	Higuchi-Takeuchi M., Ichikawa T., Kondou Y., Matsui K., Hasegawa Y., Kawashima M., Sonoike K., Mori M., Hirochika H., Matsui M.	Functional analysis of two isoforms of leaf-type Ferredoxin-NADP(+)-oxidoreductase in rice using the heterologous expression system of Arabidopsis.	Plant Physiol.	157(1)	96-108	2011	CP29,_,PSBO,CP26,PSAE,PSAH,CAB1R,CAB2R,PSAF,PSBP,PSAK,_,_,RCA,_,PSAN,PSB28,_,PSAL,LHCB3,LHCA3,PSAD,PSBS2,CP24,_,LFNR1,LHCA2,_,PSBR,ELL,_,C3H38  ,_,PSBY,PSAG,PSBX,LHCB1.1,PSBW	OsCP29, LHCB4, Lhcb4, OsLHCB4,,PsbO, psbO, OsPSBO,ASCAB9-A, OsCP26, Lhcb5, LHCB5, OsLHCB5,PsaE, OsPsaE,PsaH, GOS5, OsPSAH, OsGOS5,cab1R, LHCP, CAB, OsLhcb1, Lhcb1, Cab1, OsCAB1, Lhcb1b, OsLhcb1b, CAB2R,Oscab2R, CAB-2, OsLhcp, Lhcb1, Lhcb1a, OsLhcb1, OsLhcb1a ,Usaf, OsPS1-F, PS1-F, OsPS1, PS1,PsbP, OsPsbP, psbP,PsaK, OsPSAK,OsLFNR2, LFNR2, FNR, LFNR1, Os-LFNR1, OsLFNR1, PetH-1,,OsRcaII, rca, rcaII, OsRcaI, RCAI, ME137, OsRCA1, RCA, RCAalpha, OsRCAalpha, OsRCAbeta,,PsaN,Psb28, OsPSB28,OsNIA2, NIA2, OsNR2, NR2, OsNR3, NR3, OsNR1.2, NR1.2,PsaL, OsPSAL,Lhcb3, OsLhcb3,OsLhca3, Lhca3,PsaD, OsPsaD,PsbS, OsPsbS2,Lhcb6, OsCP24, OsLhcb6,chlH,OsLFNR1, LFNR2, Os-LFNR2, OsLFNR2, FNR, PetH-2,lhcA, Lhca2, OsLhca2,OsNR1, NR1, nia1, OsNIA1, NIA1, OsNIA2, NIA2,PsbR, OsPsbR1, PsbR1, OsPSBR,chlI, OsChlI, ChlI, CHLI, OsCHLI, OsCHLI/ELL, OsELL,Fd1, OsFd1, ADI1, OsADI1,OsC3H38, U2AF35B, OsU2AF35b,,PsbY, OsPSBY,PsaG, OsPSAG,PsbX,Lhcb1.1 OsLhcb1.1, lhcB,PsbW, OsPSBW
33416	21804028	Kasajima I., Ebana K., Yamamoto T., Takahara K., Yano M., Kawai-Yamada M., Uchimiya H.	Molecular distinction in genetic regulation of nonphotochemical quenching in rice.	Proc. Natl. Acad. Sci. U.S.A.	108(33)	13835-40	2011	PSBS2,PSBS1	PsbS, OsPsbS2,OsPsbS1, PsbS1, psbS, OsPSBS
33417	21756975	Kang C.H., Moon B.C., Park H.C., Koo S.C., Jeon J.M., Cheong Y.H., Chung W.S., Lim C.O., Kim J.Y., Yoon B.D., Lee S.Y., Kim C.Y.	Rice OsERG3 encodes an unusual small C2-domain protein containing a Ca(2+)-binding module but lacking phospholipid-binding properties.	Biochim. Biophys. Acta	1810(12)	1317-22	2011	RPP17,RPP16	Rpp17, FIERG1, OsERG1, OsERG1a, OsERG1b, OsC2DP8, C2DP8,Rpp16(t), ERG3, OsERG3, OsC2DP36, C2DP36
33418	21804566	Taoka K., Ohki I., Tsuji H., Furuita K., Hayashi K., Yanase T., Yamaguchi M., Nakashima C., Purwestri Y.A., Tamaki S., Ogaki Y., Shimada C., Nakagawa A., Kojima C., Shimamoto K.	14-3-3 proteins act as intracellular receptors for rice Hd3a florigen.	Nature	476(7360)	332-5	2011	HD3A,_,GF14F,GF14G,GF14C,KAN1,GF14B,BZIP77,GF14D,GF14A,GF14H,RAP1A	Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,OsBIP116b,GF14f, SR14-3-3, OsGF14f, S94, ric1, 14-3-3f,GF14g, OsGF14g, 14-3-3g,GF14c, OsGF14c, 14-3-3c,OsKAN1, OsKAN2, KAN2,GF14b, OsGF14b, 14-3-3b,OsbZIP77, OsFD1, FD1,GF14d, OsGF14d, Os14-3-3, 14-3-3d,GF14a, OsGF14a, WIN2, 14-3-3a,GF14h, OsGF14h, 14-3-3h,OsMADS15, FDRMADS3, RMADS215, MADS15, DEP
33419	21631533	Bonifacio A., Martins M.O., Ribeiro C.W., Fontenele A.V., Carvalho F.E., Margis-Pinheiro M., Silveira J.A.	Role of peroxidases in the compensation of cytosolic ascorbate peroxidase knockdown in rice plants under abiotic stress.	Plant Cell Environ.	34(10)	1705-22	2011	GPX3,APX3,APX4,PHGPX,APX8,APX7,APX2,GPX4,GPX5,APX1	OsGpx3, GPX3, OsGPx03,OsAPx3, OsAPx03, OSAPX3, APx3, mAPX,OsAPx4, OsAPx04, OSAPX4, APx4, pAPX4,OsGpx2, GPX2, OsGPx02, PHGPX, ricPHGPX, riPHGPX ,OsAPx8, OsAPx08, OSAPX8, APx8, OsAPX8,OsAPx7, OsAPx07, OSAPX7, APx7, sAPX,OsAPX2, OsAPx02, APXb, OsAPx2, OSAPX2, APx2, cAPX, OsAPX1, APX1,OsGpx4, GPX4, OsGPx04, OsGPX4,OsGpx5, GPX5, OsGPx05,OsAPX1, APXa, OsAPXa, OsAPx01, OsAPx1, OSAPX1, APx1, cAPX, APX2, cAPXa, OscAPXa
33420	21753117	Chen J., Liu Y., Ni J., Wang Y., Bai Y., Shi J., Gan J., Wu Z., Wu P.	OsPHF1 regulates the plasma membrane localization of low- and high-affinity inorganic phosphate transporters and determines inorganic phosphate uptake and translocation in rice.	Plant Physiol.	157(1)	269-78	2011	PHR2,PT8,PT2,IPS1,PHF1,PHF1L,SQD2.2	OsPHR2, Os-PHR2,OsPT8, PHT1-8, OsPht1;8, Pht1;8, PHT1;8, OsPHT1;8,OsPT2, PTH1-2, OsPht1;2, PHT1;2, OsPHT1;2,OsIPS1,OsPHF1, OsWD40-137, OsSEC12,OsPHF1L, OsWD40-94 ,OsSQD2, SQD2, OsSQD2.2
33421	21795261	Xia K., Liu T., Ouyang J., Wang R., Fan T., Zhang M.	Genome-wide identification, classification, and expression analysis of autophagy-associated gene homologues in rice (Oryza sativa L.).	DNA Res.	18(5)	363-77	2011	ATG7,ATG5,ATG8C,ATG8,OSK3,OSK4,ATG4,ATG1A,ATG6A,ATG6B,ATG6C,ATG8I,ATG9A,ATG9B,ATG13A,ATG13B,ATG16,ATG8D,ATG10A,ATG10B,ATG4A,ATG8E,ATG3B,ATG3A,ATG12,ATG18B,ATG18E,ATG18A,ATG18D,ATG18F,ATG8F,ATG8B,ATG18C	OsATG7, Atg7,OsATG5, Atg5,OsATG8c,Atg8, OsAtg8, APG8, OsATG8a, Atg8a,osk3, OsATG1b, ATG1B, OSK5, osk5, OSK35, SnRK1b, OsK35, OsSnRK1.1, SnRK1.1, OsSnRK1alphaB, SnRK1alphaB,osk4, OsK4, OsATG1c, ATG1C, SnRK1B, snrk1b, SnRK1B/OSK24, OSK24, OsK24, OsSNRK1b, OsSnRK1.4, SnRK1.4, OsSnRK1alphaC, SnRK1alphaC,Atg4, OsAtg4, APG4, Atg4b, OsATG4b ,OsATG1a,OsATG6a,OsATG6b, OsATG6c,OsATG6c, OsATG6b,OsATG8i,OsATG9a,OsATG9b,OsATG13a,OsATG13b,OsATG16,OsATG8d, Atg8e,OsATG10a, Atg10a,OsATG10b, Atg10b,OsATG4a, Atg4a,OsATG8e, OsATG8d, Atg8d,OsATG3b, Atg3b,OsATG3a, Atg3a,OsATG12, Atg12,OsATG18b, OsWD40-3 ,OsATG18e, OsWD40-27 ,OsATG18a, OsWD40-56 ,OsATG18d, OsWD40-114 ,OsATG18f, OsWD40-118 ,OsATG8f,OsATG8b, Atg8b,OsATG18c, OsWD40-30 
33422	18980645	Kondou Y., Higuchi M., Takahashi S., Sakurai T., Ichikawa T., Kuroda H., Yoshizumi T., Tsumoto Y., Horii Y., Kawashima M., Hasegawa Y., Kuriyama T., Matsui K., Kusano M., Albinsky D., Takahashi H., Nakamura Y., Suzuki M., Sakakibara H., Kojima M., Akiyama K., Kurotani A., Seki M., Fujita M., Enju A., Yokotani N., Saitou T., Ashidate K., Fujimoto N., Ishikawa Y., Mori Y., Nanba R., Takata K., Uno K., Sugano S., Natsuki J., Joseph Gogo Dubouzet, Maeda S., Ohtake M., Mori M., Oda K., Takatsuji H., Hirochika H., Matsui M.	Systematic approaches to using the FOX hunting system to identify useful rice genes.	Plant J.	57(5)	883-94	2009		
33423	19762423	Komiya R., Yokoi S., Shimamoto K.	A gene network for long-day flowering activates RFT1 encoding a mobile flowering signal in rice.	Development	136(20)	3443-50	2009	HD3A,RFT1,SE1,RAP1B,GHD7,PHYB,RAP1A,MADS50	Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,FT-L 3, OsFTL3, FTL3, FT-L3, RFT, OsRFT1,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, OsHd1,  Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,MADS14, OsMADS14, FDRMADS6, RMADS211, AGL10,Ghd2, Ghd7, OsGhd7, OsCCT26, OsCMF8, OsI, Ghd7/Hd4, Hd4, EH7-1/Hd4, Ghd7-0a, EH7-1, EH7/Ghd7, EH7, OsEH7, GLW7.1, OsGLW7.1,phyB, PHYB1, OsPHYB, OsphyB, OsYHB, YHB, OsPHYB/OsYHB,OsMADS15, FDRMADS3, RMADS215, MADS15, DEP,OsMADS50, AGL20, SOC1, OsSOC1, RMADS208, OsSOC1/ OsMADS50/DTH3, DTH3, OsDTH3
33424	21853042	Ahmad A., Dong Y., Cao X.	Characterization of the PRMT gene family in rice reveals conservation of arginine methylation.	PLoS ONE	6(8)	e22664	2011	PRMT3,PRMT5,PRMT6A,PRMT6B,PRMT7,PRMT10,PRMT1,PRMT4	OsPRMT3,OsPRMT5,OsPRMT6a,OsPRMT6b,OsPRMT7,OsPRMT710,OsPRMT1,OsPRMT4
33425	21830109	Wang P., Zhou G., Yu H., Yu S.	Fine mapping a major QTL for flag leaf size and yield-related traits in rice.	Theor. Appl. Genet.	123(8)	1319-30	2011	FTL1	FTL, FT-L1, OsFTL1, FTL1
33426	21883553	Asano T., Hayashi N., Kobayashi M., Aoki N., Miyao A., Mitsuhara I., Ichikawa H., Komatsu S., Hirochika H., Kikuchi S., Ohsugi R.	A rice calcium-dependent protein kinase OsCPK12 oppositely modulates salt-stress tolerance and blast disease resistance.	Plant J.	69	26-36	2012	APX2,RBOHI,ESL4,APX8,SALT	OsAPX2, OsAPx02, APXb, OsAPx2, OSAPX2, APx2, cAPX, OsAPX1, APX1,OsrbohI, Os rbohI, rbohI, OsRbohI, OsRbohF, OsNOX8, NOX8, OsRboh8, Rboh8,CDPK12, OsCDPK12, OsCPK12, CPK12, OsESL4,OsAPx8, OsAPx08, OSAPX8, APx8, OsAPX8,salT*(sal1), SalT1*, sal1, Sal1, SALT, ML, SalT, OsSalT, OsJRL, JRL, Osl43, OsL43, OsMBL1, MBL1, OsJRL01, JRL01, OsJRL1, JRL1
33427	21729241	Mittal D., Enoki Y., Lavania D., Singh A., Sakurai H., Grover A.	Binding affinities and interactions among different heat shock element types and heat shock factors in rice (Oryza sativa L.).	FEBS J.	278(17)	3076-85	2011	HSFB2C,HSF26,HSFA6,HSFC2A,HSFA2E,HSFA2D,HSFA7,HSFA1,HSFB4D,HSFC1A,HSFB4A,HSFA2B,HSFA2C,HSFB2A,HSFC2B,HSFB1,HSFA4A,HSFA5,HSFA9,HSFB2B,HSFC1B,SPL7,HSFB4B,HSFA3,HSFA2A	HSfB2c, OsHsfB2c, OsHsf-24, HSF24, OsHSF24 ,OsHsf26,HSfA6, OsHsfA6, OsHsf-17, HSF17, OsHSF17, HSFA6A, OsHsfA2f, HsfA2f, OsHsfA7b, HsfA7b,HSfC2a, OsHsfC2a, OsHsf-05, HSF05, OsHSF5, HSF5,HSfA2e, OsHsfA2e, OsHsf-12, OsHSF12, HSF12, OsHsfA2a, HsfA2a,HSfA2d, OsHsfA2d, OsHsf-08, rHsf7, HSF08, OsHSF8, HSF8, HSF7, OsHSF7, OsHSFA2dI, OsHSFA2dII, OsHSFA2dIII, OsHsfA6b, HsfA6b, OsHsf2d, Hsf2d,OsHsfA7, OsHsf-01, HSFA6B, HSF01, OsHSF1, HSF1, OsEnS-9, OsHsfA7a, HsfA7a ,OsHsfA1, HsfA1, OsHSF13, HSF13, OsHsf-13, HSF3, rHsf3, OsHsfA1a,OsHsfB4d, HSfB4d, OsHsf-10, HSF10, OsHSF10,HSfC1a, OsHsfC1a, OsHsf-02, OsHSF2, HSF2, rHsf13, HSF02, HSF13,HSfB4a, OsHsfB4a, OsHsf-20, HSF20, OsHSF20,HSfA2b, OsHsfA2b, OsHsf-18, rHsf5, HS1, HSF18, OsHSF18, HSF5, OsHSF5,HSfA2c, OsHsfA2c, OsHsf-25, rHsf6, OsHSF6, HSF25, OsHSF25, HSF6, OsHsfA6a, HsfA6a ,HSfB2a, OsHsfB2a, OsHsf-14, rHsf1, HSF1, HSF14, OsHSF14,HSfC2b, OsHsfC2b, OsHsf-16, HSF16, OsHSF16,HSfB1, OsHsfB1, OsHsf-23, HSF23, OsHsf23, OsHSF23, TBF1 ,OsHsfA4a, OsHsf-04, HSFA4B, HSF04, OsHSF4, HSF4, HSF9, OsHsfA4b, OsHSF9,HSfA5, OsHsfA5, OsHsf-06, HSF06, OsHSF6, HSF6,HSfA9, OsHsfA9, OsHsf-09, rHsf8, HSF09, OsHSF9, HSF9, HSF8, OsHsfA8, HsfA8 ,HSfB2b, OsHsfB2b, OsHsf-21, rHsf2, HSF2, HSF21, OsHSF21, OsHSF7,OsHsfC1b, HsfC1b, HSF03, OsHsf-03, OsHSF3, HSF3, HSF11,  rHsf11,spl7, HSFA4D, HSF10, HSF15, OsHSF15, SP17, OsHsf-15, rHsf10, OsHsfA4d, HSfA4d, lrd13, HSF1,HSFB4b, OsHSFB4b, OsHsf-19, OsHSF19, rHsf12, OsHSF12, HSF12, HSF19,HSfA3, OsHsfA3, OsHsf-07, HSF07, OsHSF7, HSF7, DLN57, OsDLN57,HSfA2a, OsHsfA2a, OsHsf-11, rHsf4, OsHSF11, HSF11, HSF4, RHSP2, OsHsfA2a-1, OsHsfA2a-2, OsHsfA2a-3, OsHsfA2a-4, OsHsfA2a-5, OsHsfA2a-6, OsHsfA2e, HsfA2e 
33428	21831212	Lu J., Ju H., Zhou G., Zhu C., Erb M., Wang X., Wang P., Lou Y.	An EAR-motif-containing ERF transcription factor affects herbivore-induced signaling, defense and resistance in rice.	Plant J.	68(4)	583-96	2011	_,ERF3	Lox2:Os:1, OsLOX9, LOX9, OsLOX8, LOX8, OsLOX2, LOX2, OsRLL, OsHI-LOX, HI-LOX, RLL2 LOX, RLL2, Lox2osPil, OsLOX2;1, LOX2;1, OsLOX1, OsLOX7, LOX7,AP37, OsAP37, OsERF3, OsERF#075, OsERF075, OsERF75, ERF75, AP2/EREBP#004, AP2/EREBP4, OsBIERF2, BIERF2, DLN23, OsDLN23
33429	21807887	Gui J., Shen J., Li L.	Functional characterization of evolutionarily divergent 4-coumarate:coenzyme a ligases in rice.	Plant Physiol.	157(2)	574-86	2011	4CL1,4CL3,4CL4,4CL5,4CL2	Os4CL1, 4-CL, 4-CL. 1,Os4CL3, Os4CL2, Os4CL, 4CL2, 4CL,Os4CL4,Os4CL5, 4CL3, Os4CL3,Os4CL2
33430	21824632	Konishi T., Aohara T., Igasaki T., Hayashi N., Miyazaki Y., Takahashi A., Hirochika H., Iwai H., Satoh S., Ishii T.	Down-regulation of UDP-arabinopyranose mutase reduces the proportion of arabinofuranose present in rice cell walls.	Phytochemistry	72(16)	1962-8	2011	UAM1,UAM2,UAM3	OsUAM1, RGP-1, Osgls1,OsUAM2,OsUAM3
33431	21736653	Jun N., Gaohang W., Zhenxing Z., Huanhuan Z., Yunrong W., Ping W.	Osiaa23-mediated auxin signaling defines postembryonic maintenance of QC in rice.	Plant J.	68(3)	433-42	2011	IAA28,IAA29,IAA25,IAA27,IAA30,IAA26,IAA20,IAA23,CRL1	OsIAA28,OsIAA29, OsEnS-141,OsIAA25,OsIAA27,OsIAA30,OsIAA26,OsIAA20,OsIAA23,crl1, crl1*, ARL1, ARL1/CRL1, OsLBD3-2, LBD3-2, OsCRL1
33432	21822061	Song X., Zhang B., Zhou Y.	Golgi-localized UDP-glucose transporter is required for cell wall integrity in rice.	Plant Signal Behav	6(8)	1097-100	2011	BC14	OsBC14, OsNST1, NST1
33433	21136294	Tian Y., Zhang H., Pan X., Chen X., Zhang Z., Lu X., Huang R.	Overexpression of ethylene response factor TERF2 confers cold tolerance in rice seedlings.	Transgenic Res.	20(4)	857-66	2011	CDPK13,TRXH,BHLH10,SODCC2,LTI6B,LTI6A,FER1	OsCDPK13, OsCPK13, OsCDPK7, CDPK7, OsCPK13-1, OsCPK13-2,trxh, Trx-H, OsTRXh1, TRXh1, OsTrxh1, Os1, OsTrx23, Trx23, RPP13-1,OsICE1, ICE1, OsbHLH010, bHLH010, OsMYL1, MYL1, bHLH116, OsMYC3, MYC3 ,Cu/Zn-SOD, Cu/Zn- SOD, OsCu-ZnSOD2, Cu-ZnSOD2, OsSODB, OsSOD3, SodCc2, Os SodCc2, sodB, OsSodB, RSODB, OssodCc1, OsCSD1.1, CSD1.1, OsCDS1, OsSOD3-CU/Zn, SOD3-CU/Zn, CuZnSOD2, Cu/ZnSOD2, OsCu/ZnSOD2, OsCSD1, CSD1, CuZnSOD1, OsCuZnSOD2, OsCSD4, CSD4, OsCSD3, CSD3, Cu/Zn-SOD3,OsLti6b, Lti6b, OsLTI6B, OsRCI2-6,OsLti6a, Lti6a, OsLTI6A, OsRCI2-10,OsFER1, OsFer1 
33434	21943343	Wang W., Liu Z., Guo Z., Song G., Cheng Q., Jiang D., Zhu Y., Yang D.	Comparative transcriptomes profiling of photoperiod-sensitive male sterile rice Nongken 58S during the male sterility transition between short-day and long-day.	BMC Genomics	12	462	2011	HD2,EPR1,SE1,CCA1,DOF2,GI,TOC1	Hd2(t), Hd2, qHD2(t), OsPRR37, Os-PRR37, PRR37, Prr4, OsPRR4, DTH7, Os DTH7, OsCCT28, CCT28, Ghd7.1, PRR37/Hd2, EH7-2, EH7-2/Hd2, Hd2/PRR37, PRR37-1a, PRR37-1b, PRR37-1c, PRR37-2a, PRR37- 2, HD7.2,OsEPR1, OsLHY, LHY,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, OsHd1,  Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,OsCCA1, OsLHY, LHY, LHY-like_chr.8, COC1, DLN203, OsDLN203, LEM1, OsLEM1, Nhd1, OsNhd1,OsDof, OsDof2, Dof2, OsDof-2,OsGI, Gi, Os-GI,OsTOC1, OsPRR1, Os-PRR1, PRR1, OsRRA21, OsCCT07
33435	21955397	Wang N., Xiao B., Xiong L.	Identification of a cluster of PR4-like genes involved in stress responses in rice.	J. Plant Physiol.	168(18)	2212-24	2011	PR4E,PR4D,PR4,PR4C,PR4B	OsPR4e,OsPR4d,OsPR4, OsPR4a, PR4a, OsPR-4,OsPR4c,OsPR4b, OsPR-4b
33436	21897044	Kihara A., Saburi W., Wakuta S., Kim M.H., Hamada S., Ito H., Imai R., Matsui H.	Physiological and biochemical characterization of three Nucleoside diphosphate kinase isozymes from rice (Oryza sativa L.).	Biosci. Biotechnol. Biochem.	75(9)	1740-5	2011	NDPK3,NDPK1,YSS2	OsNDPK3,OsNDPK1, NDK, rNDK, NDK1, NDKR, NDK-1,OsNDPK2, NDPK2, BIP114
33437	22102032	Kuaprasert B., Silprasit K., Horata N., Khunrae P., Wongpanya R., Boonyalai N., Vanavichit A., Choowongkomon K.	Purification, crystallization and preliminary X-ray analysis of recombinant betaine aldehyde dehydrogenase 2 (OsBADH2), a protein involved in jasmine aroma, from Thai fragrant rice (Oryza sativa L.).	Acta Crystallogr. Sect. F Struct. Biol. Cryst. Commun.	67(Pt 10)	1221-3	2011	SK2(T)(SCL, FGR)	sk2(t)(scl, fgr), fgr, scl, BAD2, BADH2, sk2, OsBADH2, Badh2, badh2, Os2AP, BADH-2, OsALDH10A8, ALDH10A8 
33438	21914651	Zhu Z.X., Liu Y., Liu S.J., Mao C.Z., Wu Y.R., Wu P.	A Gain-of-Function Mutation in OsIAA11 Affects lateral root Development in Rice.	Mol Plant	5(1)	154-61	2011	IAA11,PIN10A,IAA31,IAA12,PIN1B	OsIAA11,PIN3A, OsPIN3a, OsPIN3t, OsPIN10a, OsPIN3,OsIAA3, IAA3, OsIAA31, OsIAA30, IAA30,OsIAA12,PIN1A, OsPIN1A, OsPIN1a, REH1, OsPIN1, OsPIN1b, REH1/OsPIN1
33439	21679014	Yu Y., Streubel J., Balzergue S., Champion A., Boch J., Koebnik R., Feng J., Verdier V., Szurek B.	Colonization of rice leaf blades by an African strain of Xanthomonas oryzae pv. oryzae depends on a new TAL effector that induces the rice nodulin-3 Os11N3 gene.	Mol. Plant Microbe Interact.	24(9)	1102-13	2011	XA41	OsSWEET14, SWEET14, Os11N3, Os-11N3, 11N3, Xa41(t), xa41, Os11N3/SWEET14, OsSWEET14/Os11N3
33440	21908855	Chinpongpanich A., Wutipraditkul N., Thairat S., Buaboocha T.	Biophysical characterization of calmodulin and calmodulin-like proteins from rice, Oryza sativa L.	Acta Biochim. Biophys. Sin. (Shanghai)	43(11)	867-76	2011	_,CML5,CAM1-1,CML8,CML9,CML13,CALA,CML11,CML3,CML4,CAM61	OsCaM3, OsCam3, CaM3,OsCML5,OsCaM1, OsCam1-1, OsCaM1-1, CAM3, Cam1-1, OsCAM1.1, CAM1.1,OsCML8,OsCML9,OsCML13,CALa*, Cal1, CaM-2, CAM2, CAM, OsCaM2, OsCam2, OsCaM1, CaM1,OsCML11,OsCML3, OsSTA271, OsCML3m, OsCML3s,OsCML4,CaM61, OsCaM61, OsCML1, OsCML1d
33441	21928114	Zhu L., Hu J., Zhu K., Fang Y., Gao Z., He Y., Zhang G., Guo L., Zeng D., Dong G., Yan M., Liu J., Qian Q.	Identification and characterization of SHORTENED UPPERMOST INTERNODE 1, a gene negatively regulating uppermost internode elongation in rice.	Plant Mol. Biol.	77(4-5)	475-87	2011	SUI1	OsSUI1, OsPSS-1, PSS-1, OsPSS1, PSS1
33442	21927949	Su'udi M., Cha J.Y., Jung M.H., Ermawati N., Han C.D., Kim M.G., Woo Y.M., Son D.	Potential role of the rice OsCCS52A gene in endoreduplication.	Planta	235(2)	387-97	2012	CDC16,TAD1	OsCDC16,TAD1, OsCCS52A, TE, OsWD40-61, TAD1/TE, CCS52A1 ,  OsCCS52A1/TE/TAD1, CCS52A1/TE/TAD1, OsCDH1A, CDH1A
33443	21954461	Wu R., Li S., He S., Wassmann F., Yu C., Qin G., Schreiber L., Qu L.J., Gu H.	cfl1, a WW domain protein, regulates cuticle development by modulating the function of HDG1, a class IV homeodomain transcription factor, in rice and Arabidopsis.	Plant Cell	23(9)	3392-411	2011	CFL1	OsCFL1
33444	21966459	Wan L., Zhang J., Zhang H., Zhang Z., Quan R., Zhou S., Huang R.	Transcriptional activation of OsDERF1 in OsERF3 and OsAP2-39 negatively modulates ethylene synthesis and drought tolerance in rice.	PLoS ONE	6(9)	e25216	2011	ERF84,ERF96,ERF51,ERF77,ERF86,ERF11,ERF104,ERF12,ERF28,ERF101,ERF3,ERF103,ERF106,ERF124	OsERF#084, OsERF084, OsERF84, OsDERF10, DERF10, AP2/EREBP#097, AP2/EREBP97,DERF12, OsDERF12, OsERF#096, OsERF096, OsERF96, AP2/EREBP#116, AP2/EREBP116, OsAP2, OsAP2.1, OsAP2.2, OsERF36,OsERF#051, OsERF051, OsERF51, DERF11, OsDERF11, AP2/EREBP#156, AP2/EREBP156, RAP2-13, OsRAP2-13,OsAP2-39, AP2-39, OsERF#077, OsERF077, OsERF77, AP2/EREBP#149, AP2/EREBP149, DLN121, OsDLN121,DERF2, OsDERF2, OsERF#086, OsERF086, OsERF86, AP2/EREBP#074, AP2/EREBP74, OsERF1,OsERF#011, OsERF011, OsERF11, OsDERF9, DERF9, AP2/EREBP#083, AP2/EREBP83, DLN69, OsDLN69, ERF17_Ath,DERF3, OsDERF3, OsERF#104, OsERF104, AP2/EREBP#152, AP2/EREBP152, RAP2, OsRAP2,OsERF#012, OsERF012, OsERF12, OsDERF1, DERF1, AP2/EREBP#070, AP2/EREBP70,OsERF#028, OsERF028, OsERF28, OsERF#029, OsERF029, OsERF29, ERF29, DERF4, OsDERF4, AP2/EREBP#161, AP2/EREBP161, OsDREB1J, OsDREB1I, OsDREB1G,OsERF#101, OsERF101, OsDERF6, DERF6, AP2/EREBP#089, AP2/EREBP89, OsRap2.6, Rap2.6, ERF113, OsERF113, OsERF101/OsRAP2.6,AP37, OsAP37, OsERF3, OsERF#075, OsERF075, OsERF75, ERF75, AP2/EREBP#004, AP2/EREBP4, OsBIERF2, BIERF2, DLN23, OsDLN23,DERF5, OsDERF5, OsERF#103, OsERF103, AP2/EREBP#130, AP2/EREBP130, OsERF109,DERF7, OsDERF7, OsERF#106, OsERF106, AP2/EREBP#111, AP2/EREBP111, OsERF106MZ, ERF106MZ,DERF8, OsDERF8, OsERF#124, OsERF124, AP2/EREBP#158, AP2/EREBP158
33445	21965541	Xuan Y.H., Piao H.L., Je B.I., Park S.J., Park S.H., Huang J., Zhang J.B., Peterson T., Han C.D.	Transposon Ac/Ds-induced chromosomal rearrangements at the rice OsRLG5 locus.	Nucleic Acids Res.	39(22)	e149	2011	_	OsRLG5
33446	21834856	Chang J.C., Liao Y.C., Yang C.C., Wang A.Y.	The purine-rich DNA-binding protein OsPuralpha participates in the regulation of the rice sucrose synthase 1 gene expression.	Physiol Plant	143(3)	219-34	2011	PURAPLHA,RSUS1	OsPuraplha,sus1, RSus1(t), SUS1, SS2, OsScS2, RSs2, RSus1, SuSy1, OsSUS1, RSS2, RSus2, OsRSUS1
33447	21912859	Hirano K., Aya K., Kondo M., Okuno A., Morinaka Y., Matsuoka M.	OsCAD2 is the major CAD gene responsible for monolignol biosynthesis in rice culm.	Plant Cell Rep.	31(1)	91-101	2012	COMTL1,NOMT,GH2,CAD4,CAD5,CAD8A,CAD9,CAD8B,CAD1,COMTL5,CAD8D,CAD3,COMTL4,COMTL6,CAD8C,FC1,COMTL2,CAD6,ROMT9	OsCOMTL1, OsCOMT27, COMT27,OsNOMT, COMTL3, OsCOMTL3, OsCOMT29, COMT29,gh2, CAD2, CAD, OsCAD2, OsGH2 ,OsCAD4,OsCAD5,OsCAD8A,OsCAD9,OsCAD8B,OsCAD1,OsCOMTL5, OsCOMT4, COMT4,OsCAD8D,OsCAD3,OsCOMTL4, COMT2, OsCOMT2,OsCOMTL6, OsCOMT5, COMT5,OsCAD8C, CAD8c,OsCAD7, fc1, CAD7,OsCOMTL2, OsCOMT3, COMT3,OsCAD6,COMT, OsCOMT, ROMT-9, OsCOMT1, OsCAldOMT1, CAldOMT1, OsOMT, OsCOMT15, COMT15
33448	21941532	Shinozuka H., Cogan N.O., Spangenberg G.C., Forster J.W.	Comparative Genomics in Perennial Ryegrass (Lolium perenne L.): Identification and Characterisation of an Orthologue for the Rice Plant Architecture-Controlling Gene OsABCG5.	Int J Plant Genomics	2011	291563	2011	ABCG3,ABCG6,ABCG5	OsABCG3,OsABCG6,OsABCG5
33449	21892614	Yuan L., Yang S., Liu B., Zhang M., Wu K.	Molecular characterization of a rice metal tolerance protein, OsMTP1.	Plant Cell Rep.	31(1)	67-79	2012	MTP1	OsMTP1
33450	20838584	Mahmoud W Yaish, Ashraf El-Kereamy, Zhu T., Perrin H Beatty, Allen G Good, Yong-Mei Bi, Steven J Rothstein	The APETALA-2-like transcription factor OsAP2-39 controls key interactions between abscisic acid and gibberellin in rice.	PLoS Genet.	6(9)	e1001098	2010	NCED3,ABA1,ERF77,NCED1,EUI1	OSNCED3, OsNCED-3, OsNCED3, OsNCED3a, NCED3a, OsNCED4, NCED4, OsNECD2, OsNCED2b, NCED2b ,OsABA1, Zep1, OsAba1, Aba2, OsAba2, OsZep1, Zep, OsZep, Aba1, OsABA2, Osaba1, OsZEP-1, OsZEP, OSZEP1, ZEP1, ZEP,OsAP2-39, AP2-39, OsERF#077, OsERF077, OsERF77, AP2/EREBP#149, AP2/EREBP149, DLN121, OsDLN121,OSNCED1, OsNCED-1, OsNCED3, OsNced3, NCED3, OsNCED9, NCED9,eui1, GA16,17ox, CYP714D1, EUI, CYP714D1/EUI, OsEUI, LG5, OsLG5
33451	21961694	Zhang Y., Su J., Duan S., Ao Y., Dai J., Liu J., Wang P., Li Y., Liu B., Feng D., Wang J., Wang H.	A highly efficient rice green tissue protoplast system for transient gene expression and studying light/chloroplast-related processes.	Plant Methods	7(1)	30	2011	CAB1R,CAB2R,TRX29,TRX14,GLK1,_,_,RBCS4,_	cab1R, LHCP, CAB, OsLhcb1, Lhcb1, Cab1, OsCAB1, Lhcb1b, OsLhcb1b, CAB2R,Oscab2R, CAB-2, OsLhcp, Lhcb1, Lhcb1a, OsLhcb1, OsLhcb1a ,OsTRX m5, Ostrxm5, OsTRXM5, TRXM5, OsTrxm, OsTrx29, Trx29,OsTRX m2, TRX m2, OsTRXM2, TRXM2, OsTrx14, Trx14,OsGLK1, OsGlk1, GLK1,GADPH, OsGAPDHB, GAPDHB, OsGAPB, GAPB,OsRpl6-2, Rpl6-2,RbcS, RbcS4, OsRBCS4, OsRbcS4,BAS1, OsTPX, Os2-Cys PrxA, 2-Cys PrxA, Os2-CysPrxA, 2-CysPrxA, 2CYSPRXA, OsPRX2, PRX2
33452	21976713	Zhang J.W., Xu L., Wu Y.R., Chen X.A., Liu Y., Zhu S.H., Ding W.N., Wu P., Yi K.K.	OsGLU3, a Putative Membrane-Bound endo-1,4-beta-glucanase, Is Required for Root Cell Elongation and Division in Rice (Oryza sativa L.).	Mol Plant	5(1)	176-86	2012	_	OsGLU3, OsGH9A2, GLU3, GH9A2
33454	21972902	Deng M., Bian H., Xie Y., Kim Y., Wang W., Lin E., Zeng Z., Guo F., Pan J., Han N., Wang J., Qian Q., Zhu M.	Bcl-2 suppresses hydrogen peroxide-induced programmed cell death via OsVPE2 and OsVPE3, but not via OsVPE1 and OsVPE4, in rice.	FEBS J.	278(24)	4797-810	2011	GLUP3,VPE4,VPE2,REP2	glup3(esp7), esp7, glup3, OsVPE1, VPE1, OsaLeg3,OsVPE4, OsaLeg4, Leg4,OsVPE2, OsaLeg1, OsLeg1, Leg1,OsVPE3, VPE3, OsREP-2, REP-2alpha, REP-2beta, OsaLeg2, aLeg2
33455	22038138	Yoo J.H., Park J.H., Cho S.H., Yoo S.C., Li J., Zhang H., Kim K.S., Koh H.J., Paek N.C.	The rice bright green leaf (bgl) locus encodes OsRopGEF10, which activates the development of small cuticular papillae on leaf surfaces.	Plant Mol. Biol.	77(6)	631-41	2011	BGL,RAC1	bgl, OsRopGEF10, Os RopGEF10, RopGEF10, OsGEF21, GEF21, SPD25, OsSPD25,OsRAC1, OsRac1, Os Rac1, Rac1, Os-Rac1
33456	15118338	Kasai K., Makiko Kawagishi-Kobayashi, Teraishi M., Ito Y., Ochi K., Wakasa K., Tozawa Y.	Differential expression of three plastidial sigma factors, OsSIG1, OsSIG2A, and OsSIG2B, during leaf development in rice.	Biosci. Biotechnol. Biochem.	68(4)	973-7	2004	YGL13,SIG2A,SIG2B	OsSIG1, SIG1, Os-SigA, OsSigA, Os Sig1, SIGA,OsSIG2A, OsSig2A,OsSIG2B
33457	22020099	Heo J.B., Yi Y.B., Bahk J.D.	Rice GDP dissociation inhibitor 3 inhibits OsMAPK2 activity through physical interaction.	Biochem. Biophys. Res. Commun.	414(4)	814-9	2011	GDI3,GAP1,_,MSRMK2	OsGDI3, OsGDI2, GDI2,OsGAP1,OsRab11D1, OsRab11, Rab11, ric2,OsMSRMK2, OsMAPK5, OsMAP1, OsMPK3, OsBIMK1, OsMAPK2, MPK5, BIMK1, MAPK2, MAPK5, MPK3, OsMPK5, OsMAPK3, OsMAPK5b, MAPK3
33458	22027003	Kim H.B., Oh C.J., Park Y.C., Lee Y., Choe S., An C.S., Choi S.B.	Comprehensive analysis of AHL homologous genes encoding AT-hook motif nuclear localized protein in rice.	BMB Rep	44(10)	680-5	2011	AHL1,AHL16,PTC2,AHL5,AHP1,AHL9,DP1,AHL10,AHL12,AHL13,AHL19,AHL15,AHL2,AHL18,AHL20,AHL17,AHL3,_,AHL6,AHL7	OsAHL1, OsAHL14, AHL14,OsAHL16,OsPTC2, OsAHL4, AHL4,OsAHL5,OsAHP1, OsAHL8, AHL8,OsAHL9,dp1, pa, DP1/PAL1, PAL1, OsDP1, OsAHL11, AHL11,OsAHL10,OsAHL12,OsAHL13,OsAHL19,OsAHL15, AHL,OsAHL2,OsAHL18,OsAHL20,OsAHL17, AHL,OsAHL3,OsAHL1, AHL1,OsAHL6,OsAHL7
33459	22020753	Gao X., Chen Z., Zhang J., Li X., Chen G., Li X., Wu C.	OsLIS-L1 encoding a lissencephaly type-1-like protein with WD40 repeats is required for plant height and male gametophyte formation in rice.	Planta	235(4)	713-27	2012	ASP1	OsLIS-L1, OsWD40-155, ASP1, TPR2, OsTPR2, OsREL2, REL2, OsTPL3, TPL3, OsTPL2, TPL2, ASP-LSL
33460	21113669	Huang Z., Gan Z., He Y., Li Y., Liu X., Mu H.	Functional analysis of a rice late pollen-abundant UDP-glucose pyrophosphorylase (OsUgp2) promoter.	Mol. Biol. Rep.	38(7)	4291-302	2011	UGP2	Ugp2, OsUgp2
33461	22003982	Lee D.Y., An G.	Two AP2 family genes, SUPERNUMERARY BRACT (SNB) and OsINDETERMINATE SPIKELET 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice.	Plant J.	69(3)	445-61	2012	DL,FZP,MIR172C,MIR172D,MIR172B,IDS1,SNB,MIR172A	OsDL, dl(lop), lop, dl, dl1, OsDRPq3, DRPq3,fzp*, fzp, OsBD1, BD1, OsERF#078, OsERF078, OsERF78, ERF78, AP2/EREBP#133, AP2/EREBP133, BFL1, SGDP7, OsSGDP7,OsmiR172c, miR172c, osa-MIR172c, Osa-miR172c ,OsmiR172d, miR172d, osa-MIR172d osa-miR172d osa-miR172d-3p osa-miR172d-5p, Osa-miR172d,OsmiR172b, miR172b, osa-MIR172b, Osa-miR172b ,OsIDS1, AP2/EREBP#033, AP2/EREBP33, AP2-33/IDS1, AP2-33, AP2-2, DLN104, OsDLN104,AP2/EREBP#073, AP2/EREBP73, AP2-3, OsAP2-3, SSH1, OsSSH1, OsSNB, DLN181, DLN181a, DLN181b, OsDLN181, OsDLN181a, OsDLN181b, SUI4, OsSUI4, SUI4/SNB,OsmiR172a, miR172a, osa-MIR172a, Osa-miR172a 
33462	22039214	Liu W., Kohlen W., Lillo A., Op den Camp R., Ivanov S., Hartog M., Limpens E., Jamil M., Smaczniak C., Kaufmann K., Yang W.C., Hooiveld G.J., Charnikhova T., Bouwmeester H.J., Bisseling T., Geurts R.	Strigolactone Biosynthesis in Medicago truncatula and Rice Requires the Symbiotic GRAS-Type Transcription Factors nsp1 and NSP2.	Plant Cell	23(10)	3853-65	2011	NSP1,D27,NSP2	Os NSP1, OsNSP1, OsGRAS-14, OsGRAS14, GRAS-14, GRAS14,d27(d t), dt, dwf23, d27, OsD27,Os NSP2, OsNSP2, OsGRAS-13, OsGRAS13, GRAS-13, GRAS13, OsGRAS12, GRAS12
33463	21979082	Wutipraditkul N., Boonkomrat S., Buaboocha T.	Cloning and characterization of catalases from rice, Oryza sativa L.	Biosci. Biotechnol. Biochem.	75(10)	1900-6	2011	NOE1,CATA,CATB	CATC, OsCat, OsCatC, OsCATC, OsNOE1, noe1, catC, OsCATC, CAT3, OsCAT3, LLM9428, OsLLM9428,CATA1, Cat A1*, OSCAT-A, Cat2, CatA1, CAT-A, OsCatA, OsCAT, CAT, catA, OSCATA, OsCATc, OsCATA, OsCAT1A, CAT1, OsCAT1, OsCATC, OsCAT2,CatB, CAT-B, OsCatB, OsCATB, OsCAT1B, CAT1B, CAT2, OsCAT2
33464	21984902	Ma H., Zhao H., Liu Z., Zhao J.	The phytocyanin gene family in rice (Oryza sativa L.): genome-wide identification, classification and transcriptional analysis.	PLoS ONE	6(10)	e25184	2011	UCL1,UCL2,UCL3,UCL5,UCL9,UCL14,UCL21,ENODL15,ENODL23,UCL6,UCL4,UCL10,UCL11,UCL15,UCL16,UCL17,UCL18,UCL19,UCL13,UCL12,UCL20,UCL22,UCL25,UCL26,ENODL9,ENODL3,ENODL4,ENODL1,ENODL2,ENODL5,ENODL6,ENODL7,ENODL8,ENODL10,ENODL11,ENODL12,ENODL13,ENODL19,ENODL20,ENODL21,ENODL22,ENODL24,UCL24,UCL27,UCL28,UCL29,UCL30,UCL31,UCL32,UCL34,_,_,_,UCL7,UCL8,UCL23,ENODL16,ENODL14,UCL33,UCL35,NRFG3,ENODL18	OsUCL1,OsUCL2,OsUCL3,OsUCL5,OsUCL9,OsUCL14,OsUCL21,OsENODL15,OsENODL23,OsUCL6,OsUCL4,OsUCL10,OsUCL11,OsUCL15,OsUCL16,OsUCL17,OsUCL18,OsUCL19,OsUCL13,OsUCL12,OsUCL20,OsUCL22,OsUCL25,OsUCL26,OsENODL9,OsENODL3,OsENODL4,OsENODL1, OsELA1, ELA1,OsENODL2,OsENODL5,OsENODL6, OsELA2, ELA2, OsEnS-24,OsENODL7,OsENODL8,OsENODL10,OsENODL11,OsENODL12,OsENODL13,OsENODL19,OsENODL20,OsENODL21,OsENODL22,OsENODL24,OsUCL24,OsUCL27,OsUCL28,OsUCL29,OsUCL30,OsUCL31,OsUCL32,OsUCL34,OsSCL1,OsSCL2,OsSCL3,OsUCL7,OsUCL8,OsUCL23,OsENODL16,OsENODL14,OsUCL33,OsUCL35,OsENODL17, ENODL17, OsNRFG3,OsENODL18, OsELA3, ELA3, EN20, OsEN20
33465	22010949	Wang W.H., K?hler B., Cao F.Q., Liu G.W., Gong Y.Y., Sheng S., Song Q.C., Cheng X.Y., Garnett T., Okamoto M., Qin R., Mueller-Roeber B., Tester M., Liu L.H.	Rice DUR3 mediates high-affinity urea transport and plays an effective role in improvement of urea acquisition and utilization when expressed in Arabidopsis.	New Phytol.	193(2)	432-44	2012	AMT1;3,DUR3,NGLF,_	OsAMT1;3, AMT1-3, Osamt1-2, "OsAMT1,2", OsAMT1;2, OsAMT1.3, AMT1.2,OsDUR3 ,OsARG, ARG, Nglf, Nglf-1, OsAGM, AGM,
33466	22042862	Lee I., Seo Y.S., Coltrane D., Hwang S., Oh T., Marcotte E.M., Ronald P.C.	Genetic dissection of the biotic stress response using a genome-scale gene network for rice.	Proc. Natl. Acad. Sci. U.S.A.	108(45)	18548-53	2011	_,_,XA21,ROX2	ROX1,ROX3,Xa21*, Xa21, OsXA21,OsROX2, OsNSUN3, NSUN3
33467	21904112	Shimada T., Ogawa Y., Shimada T., Hara-Nishimura I.	A non-destructive screenable marker, OsFAST, for identifying transgenic rice seeds.	Plant Signal Behav	6(10)	1454-6	2011	OLE4	OsOLE4, Os-OLE4
33468	22038091	Du H., Liu L., You L., Yang M., He Y., Li X., Xiong L.	Characterization of an inositol 1,3,4-trisphosphate 5/6-kinase gene that is essential for drought and salt stress responses in rice.	Plant Mol. Biol.	77(6)	547-63	2011	ITPK5,ITPK6,ITPK3,ITPK4,DSM3,ITPK1	OsITPK5, OsITP5/6K-5, OsITL3,OsITPK6, OsITP5/6K-6, ITP5/6K-6,OsITPK3, OsITP5/6K-3, ITP5/6K-3, OsIPK1,OsITPK4, OsITP5/6K-4, ITP5/6K-4,OsITPK2, ITPK2, OsDSM3, OsITP5/6K-2, OsITL1,OsITPK1, OsITP5/6K-1, ITP5/6K-1, OsITL2
33469	21973088	Qi Y., Wang S., Shen C., Zhang S., Chen Y., Xu Y., Liu Y., Wu Y., Jiang D.	OsARF12, a transcription activator on auxin response gene, regulates root elongation and affects iron accumulation in rice (Oryza sativa).	New Phytol.	193(1)	109-20	2012	MIR167D,ARF6B,ARF8	miR167d, osa-miRNA167d, osa-miR167d, osa-miR167d-3p, osa-miR167d-5p,OsARF6b, OsARF25, ARF25,OsARF8, OsARF12, ARF12
33470	22016342	Yadav S.R., Khanday I., Majhi B.B., Veluthambi K., Vijayraghavan U.	Auxin-Responsive OsMGH3, a Common Downstream Target of OsMADS1 and OsMADS6, Controls Rice Floret Fertility.	Plant Cell Physiol.	52(12)	2123-35	2011	GH3-8,LHS1,MFO1	OsGH3-8, OsMGH3, OsGH3.8, GH3.8, OsGH3-2,OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO, OsLHS1, OsLG3b, LG3b, qLGY3, LGY3, DLN80, OsDLN80, OLR, OsOLR, GW3p6, OsGW3p6, OsMADS1GW3p6, MADS1GW3p6, qLGY3/OsLG3b/GW3p6,OsMADS6, MADS6, OsMFO1
33471	22010108	Zhang C.J., Zhao B.C., Ge W.N., Zhang Y.F., Song Y., Sun D.Y., Guo Y.	An Apoplastic H-Type Thioredoxin Is Involved in the Stress Response through Regulation of the Apoplastic Reactive Oxygen Species in Rice.	Plant Physiol.	157(4)	1884-99	2011	ONAC2,TRXH,BZIP23,TRX3,TRXH4,TRXH8,TRX20,TRXH5,SOS1,PITA,DREB1B,EM,TRAB1,TRX1,TRX26,TRXH2	SNAC1, snac1, OsNAC9, ONAC002, ONAC2, ONAC033, ONAC33, ONAC043, ONAC43, ONAC044, ONAC44, OsNAC19, NAC19, SNAC1/ONAC002, OsSNAC1, OsNAC9, OsNAC1,trxh, Trx-H, OsTRXh1, TRXh1, OsTrxh1, Os1, OsTrx23, Trx23, RPP13-1,OsbZIP23, OsAREB1, OsABF2, Osbzip23, OsAREB2, OsZIP23, ZIP23,OsTRXh10, TRXh10, OsTRX2, TRX2, TRXF, OsTRXF, OsTrx03, Trx03, OsTrx3, Trx3,OsTRXh4, OsTrx10, Trx10, Os3, OsTrxh3,OsTRXh8, OsTrx18, Trx18, Os5, OsTrxh5,OsTRXh9, TRXH9, OsTrx20, Trx20,OsTRXh5, OsTrx24, Trx24, Os4, OsTrxh4,OsSOS1, OsNHA1, NHA1, SOS1/NHX7, NHX7, OsNHX7,Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30, Trx30,OsDREB1B, ERF31, OsERF031, OsERF#031, OsERF31, AP2/EREBP#169, AP2/EREBP169, OsDREB1b, OsDREB1C, OsCBF1, CBF1,Em*, EMP1, Emp1, EM, Em, OsEm, Osem, OsLEA21, OsEm1, Em1 ,OsbZIP66, OsABF5, Osbzip66, OsTRAB1, bZIP66, ABF5,OsTRXh7, TRXh7, OsTrx1, Trx1, OsTrx01, Trx01,OsTRXh3, TRXH3, OsTrx26, Trx26, antiSTR1, OsTDX, TDX,OsTRXh2, Os2, OsTrxh2
33472	22035218	Huang C.F., Yamaji N., Chen Z., Ma J.F.	A tonoplast-localized half-size ABC transporter is required for internal detoxification of aluminum in rice.	Plant J.	69(5)	857-67	2012	NRAMP4,ZOS12-02,ALS1	OsNRAMP4, Nrat1, Nramp6, OsNRAT1, NRAT1, FCO5,OsART1, STAR3, OsZOS12-02, ART1,OsALS1, OsABCB25, ABCB25
33473	22041789	Kim S.K., You Y.N., Park J.C., Joung Y., Kim B.G., Ahn J.C., Cho H.S.	The rice thylakoid lumenal cyclophilin OsCYP20-2 confers enhanced environmental stress tolerance in tobacco and Arabidopsis.	Plant Cell Rep.	31(2)	417-26	2012	CYP20-2	OsCYP20-2, OsCYP-11, OsNuCYP20-2
33474	21770770	Peng D.H., Qiu D.W., Ruan L.F., Zhou C.F., Sun M.	Protein elicitor PemG1 from Magnaporthe grisea induces systemic acquired resistance (SAR) in plants.	Mol. Plant Microbe Interact.	24(10)	1239-46	2011	NH1,EDS1,_,PR1A,PR10A,PAL1,AOS2	OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2, DLN5, OsDLN5,  OsBTBA1, BTBA1,OsEDS1,Lox2:Os:1, OsLOX9, LOX9, OsLOX8, LOX8, OsLOX2, LOX2, OsRLL, OsHI-LOX, HI-LOX, RLL2 LOX, RLL2, Lox2osPil, OsLOX2;1, LOX2;1, OsLOX1, OsLOX7, LOX7,OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1, OsPR1b, PR1alpha, OsPR1alpha,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6,OsAOS2, CYP74A2, OsAOS, OsAOS1
33475	22000657	Zhuang X., Fiesselmann A., Zhao N., Chen H., Frey M., Chen F.	Biosynthesis and emission of insect herbivory-induced volatile indole in rice.	Phytochemistry	73(1)	15-22	2012	TSA,_,IGL	OsTSA, pOsTSA, TSbeta, TSA1, OsTSA1,,OsIGL, OsIgl
33476	22123026	Ishikawa S., Suzui N., Ito-Tanabata S., Ishii S., Igura M., Abe T., Kuramata M., Kawachi N., Fujimaki S.	Real-time imaging and analysis of differences in cadmium dynamics in rice cultivars (Oryza sativa) using positron-emitting 107Cd tracer.	BMC Plant Biol.	11(1)	172	2011	GCC7	HMA3, OsHMA3, OsHMA3a, OsHMA3n, osHMA3, OsHMP34, HMP34
33477	22101802	Narawongsanont R., Kabinpong S., Auiyawong B., Tantitadapitak C.	Cloning and Characterization of AKR4C14, a Rice Aldo-keto reductase, from Thai Jasmine Rice.	Protein J.	31(1)	35-42.	2012	ARK1,AKR2	OsARK1, OsAKR4-1, AKR4-1,OsAKR2, AKR4C14, OsAKR4-2, AKR4-2
33478	22140509	Ramamoorthy R., Jiang S.Y., Ramachandran S.	Oryza sativa Cytochrome P450 Family Member OsCYP96B4 Reduces plant height in a Transcript Dosage Dependent Manner.	PLoS ONE	6(11)	e28069	2011	SD37	OsCYP96B4, CYP96B4, CYP96B4/SD37, OsDSS1, DSS1, CFL2, OsCFL2, CFL2/OsCYP96B4, BSHT1, OsBSHT1, BSHT1/OsCYP96B4, DDT1, OsDDT1
33479	22080728	Sturms R., Dispirito A.A., Fulton D.B., Hargrove M.S.	Hydroxylamine reduction to ammonium by plant and cyanobacterial hemoglobins.	Biochemistry	50(50)	10829-35	2011	Hb1	HB1, OsHB1, GLB1A, rHb1, ORYsa GLB1a, nsHb1, OsNSHB1, hb1, nsHb, OsPgb1.1, Pgb1.1
33480	22084314	Takahashi H., Kawakatsu T., Wakasa Y., Hayashi S., Takaiwa F.	A Rice Transmembrane bZIP Transcription Factor, OsbZIP39, Regulates the Endoplasmic Reticulum Stress Response.	Plant Cell Physiol.	53	144-153	2011	BZIP50,O3,BZIP39	OsbZIP60, bZIP50, OsbZIP50, OsbZIP74, bZIP74, OsbZIP50-S,OsbZIP60, bZIP60,OsbZIP39, bZIP39, DLN138, OsDLN138
33481	22058019	Park H.S., Ryu H.Y., Kim B.H., Kim S.Y., Yoon I.S., Nam K.H.	A subset of OsSERK genes, including OsBAK1, affects normal growth and leaf development of rice.	Mol. Cells	32(6)	561-9	2011	SERK1,_,SERL3,TMS10,SERL1,DOCS1,SERL8,SERL2,_,SG2	OsSERK1, OsSERK2, OsBiSERK1, SERK2, BiSERK1, OsSerk2, OsBAK1-2,OsBiSERK1,OsSERL3,OsSERK4, OsSERL9, OsSERK2, OsBAK1-5, OsTMS10, SERK4, SERL9, SERK2, BAK1-5, OsBAK1, BAK1,OsSERL1, OsBAK1-8, BAK1-8,OsSERL4, OsBAK1-9, Docs1, OsDOCS1,OsSERL8, OsBAK1-6, BAK1-6, TMS10L,OsSERL2, SERK1, OsBAK1-7, BAK1-7,OsSERK3, OsSERL6, OsBI-SERK1, BI-SERK1, OsBAK1-3,OsSERK1, SERK1, OsBAK1, BAK1, OsSERK1/OsBAK1, OsBISERK1, BISERK1, OsSerk1, OsBAK1-1, 08SG2/OsBAK1, 08SG2, OsSG2
33482	22123790	Satoh-Nagasawa N., Mori M., Nakazawa N., Kawamoto T., Nagato Y., Sakurai K., Takahashi H., Watanabe A., Akagi H.	Mutations in rice (Oryza sativa) heavy metal ATPase 2 (OsHMA2) restrict the translocation of Zn and Cd.	Plant Cell Physiol.	53(1)	213-24	2012	HMA2	OsHMA2, osHMA2, OsHMA2v 
33483	22142475	Jiang L., Qian D., Zheng H., Meng L.Y., Chen J., Le W.J., Zhou T., Zhou Y.J., Wei C.H., Li Y.	RNA-dependent RNA polymerase 6 of rice (Oryza sativa) plays role in host defense against negative-strand RNA virus, Rice stripe virus.	Virus Res.	163(2)	512-9	2012	RDR1,SHL2,RDR4,RDR3,RDR2	OsRDR1,shl2, SHL2, sh2, OsRDR6, RDR6,OsRDR4, OsRDR3b,OsRDR3, OsRDR3a,OsRDR2
33484	22050533	Hayashi S., Wakasa Y., Takahashi H., Kawakatsu T., Takaiwa F.	Signal transduction by IRE1-mediated splicing of bZIP50 and other stress sensors in the endoplasmic reticulum stress response of rice.	Plant J.	69	946-956	2012	PDIL1-1,BIP1,ERO1,BIP4,FES1C,BZIP50,IRE1,_,BIP3,BIP2,CNX,O3,BIP5,BZIP39,ERDJ3B,SAR1D	OsPDIL1;1, PDIL1;1, PDIL 1-1, PDI, OsPDIL1-1, OsTrx28, Trx28,OsBiP1, BiP1, BiP, Bip3, OsBiP3, BIP1/OsBIP3, OsMed37_2, Med37_2 ,OsERO1, Ero1,OsBiP4, BiP4, OsMed37_5, Med37_5, BiP2,NEF, OsFes1C, Fes1C,OsbZIP60, bZIP50, OsbZIP50, OsbZIP74, bZIP74, OsbZIP50-S,OsIRE1, OsIre1,,OsBiP3, BiP3,OsBiP2, Bip2,OsCNX, OsCNX1, CNX1,OsbZIP60, bZIP60,OsBiP5, OsBiP, BiP, BiP5, OsMed37_7, Med37_7,OsbZIP39, bZIP39, DLN138, OsDLN138,OsDjB6, OsERdj3B, ERdj3B,OsSAR1, SAR1, OsARL1c, ARL1c, OsSar1d, Sar1d
33485	22147560	Singh A., Mittal D., Lavania D., Agarwal M., Mishra R.C., Grover A.	OsHsfA2c and OsHsfB4b are involved in the transcriptional regulation of cytoplasmic OsClpB (Hsp100) gene in rice (Oryza sativa L.).	Cell Stress Chaperones	17(2)	243-54.	2011	HSP101,FLO24,CLPB-M	Oshsp101, OsHSP101, ClpB-cyt, OsClpB-cyt, ClpB-C/Hsp100, OsClpB-C,ClpB-c, OsClpB-c, OsFLO24, HSP101, OsHSP101,ClpB-m, OsClpB-m
33486	22057936	Hu T., Zeng H., He S., Wu Y., Wang G., Huang X.	Molecular Analysis of OsLEA4 and Its Contributions to Improve E. coli Viability.	Appl. Biochem. Biotechnol.	166(1)	222-33	2012	LEA2	OsLEA2, OsLEA4, LEA4
33487	22127413	He S., Tan L., Hu Z., Chen G., Wang G., Hu T.	Molecular characterization and functional analysis by heterologous expression in E. coli under diverse abiotic stresses for OsLEA5, the atypical hydrophobic LEA protein from Oryza sativa L.	Mol. Genet. Genomics	287(1)	39-54	2012	LEA8	OsLEA8, OsLEA8a, OsLEA8b, OsLEA5, LEA5
33488	22207574	Ning J., Zhang B., Wang N., Zhou Y., Xiong L.	Increased leaf angle1, a Raf-like MAPKKK that interacts with a nuclear protein family, regulates mechanical tissue formation in the Lamina joint of rice.	Plant Cell	23(12)	4334-47	2012	IIP2,IIP6,IIP4,IIP5,IIP3,ILA1,ILA1	IIP2,IIP6,IIP4,IIP5,OsIIP3,IIP1,OsILA1, OsACTPK4, ACTPK4, OsMAPKKK43, MAPKKK43
33489	22130861	Wang Y., Wan L., Zhang L., Zhang Z., Zhang H., Quan R., Zhou S., Huang R.	An ethylene response factor OsWR1 responsive to drought stress transcriptionally activates wax synthesis related genes and increases wax production in rice.	Plant Mol. Biol.	78(3)	275-88	2012	ERF2,ERF3,ERF127,ERF1	OsWR4, WR4, OsERF#002, OsERF002, ERF002, OsERF2, AP2/EREBP#100, AP2/EREBP100,Os02ERF, OsSHN1, OsWR1, WR1, OsERF#003, OsERF003, OsERF3, AP2/EREBP#012, AP2/EREBP12,OsWR3, WR3, OsERF#127, OsERF127, AP2/EREBP#023, AP2/EREBP23, OsERF3, ERF3,Os06ERF, OsWR2, WR2, OsERF#001, OsERF001, OsERF1, AP2/EREBP#057, AP2/EREBP57, RD1, OsSHN, SHN
33490	22150097	Xue Z., Duan L., Liu D., Guo J., Ge S., Dicks J., ?M?ille P., Osbourn A., Qi X.	Divergent evolution of oxidosqualene cyclases in plants.	New Phytol.	193(4)	1022-38	2012	_,_,_,_	OsOSC2, CAS1,OsOSC8,OsOSC7, OSC7, OsPS, PS, OsOSC7/OsPS, OsOSC7i, OsOSC7j ,OsIAS, OsOSC11, IAS, OSC11
33491	22146717	Seto Y., Hamada S., Ito H., Masuta C., Matsui H., Nabeta K., Matsuura H.	Tobacco salicylic acid glucosyltransferase is active toward tuberonic acid (12-hydroxyjasmonic acid) and is induced by mechanical wounding stress.	Biosci. Biotechnol. Biochem.	75(12)	2316-20	2011	SGT	OsSGT, UGT74H3, OsUGT74H3
33492	22160725	Uraguchi S., Kamiya T., Sakamoto T., Kasai K., Sato Y., Nagamura Y., Yoshida A., Kyozuka J., Ishikawa S., Fujiwara T.	Low-affinity cation transporter (OsLCT1) regulates cadmium transport into rice grains.	Proc. Natl. Acad. Sci. U.S.A.	108(52)	20959-64	2011	LCT1	OsLCT1
33493	22189955	Liu C., Wu Y., Wang X.	bZIP transcription factor OsbZIP52/RISBZ5: a potential negative regulator of cold and drought stress response in rice.	Planta	235(6)	1157-69	2012	LEA3-1,_,LEA22,BGAL1,TPP1,RISBZ5	OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3, OsLEA3A, LEA3A,gp1,OsLEA22, RAB25, OsRab16, Rab16, OsABA45, ABA45,OsBgal1, beta-gal, OsBGal1,OsTPP1, OsTPS, TPP,OsbZIP52, bZIP52
33494	22212404	Campos-Soriano L., Garc?a-Mart?nez J., Segundo B.S.	The arbuscular mycorrhizal symbiosis promotes the systemic induction of regulatory defence-related genes in rice leaves and confers resistance to pathogen infection.	Mol. Plant Pathol.	13(6)	579-92	2012	NH1,AOC,CML4,ERF108,MPK6,CBP,PR10A,PR1A,CAM,ERF72,_,REM1.5,MPK7,SH11	OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2, DLN5, OsDLN5,  OsBTBA1, BTBA1,OsAOC, AOC1, OsAOC1, HB, CPM2, OsAOC4, AOC4,OsCML4,OsAP2, OsERF#108, OsERF108, AP2/EREBP#001, AP2/EREBP1, RD2,OsMPK6, OsDR6, DR6, OsMPK4, MPK4, OsMAPK4, MAPK4,OsCBP,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1, OsPR1b, PR1alpha, OsPR1alpha,OsCaM,OsEREBP, OsERF#072, OsERF072, OsERF72, AP2/EREBP#064, AP2/EREBP64, BIERF1, OsBIERF1, OsEBP2,OsDUF26, CRRSP, OsCRRSP55, CRRSP55,OsREM1.5,OsMPK7, OsMAPK44, MAPK44, OsMAPK20-5, MAPK20-5,OsJAmyb, JAmyb, OsJAMyb, OsMYB21, MYB21, Os2R_MYB91, 2R_MYB91, OgSH11, OsSH11
33495	22196946	Chou T.S., Chao Y.Y., Kao C.H.	Involvement of hydrogen peroxide in heat shock- and cadmium-induced expression of ascorbate peroxidase and glutathione reductase in leaves of rice seedlings.	J. Plant Physiol.	169(5)	478-86	2012	APX2,APX4,APX1,GR2,GR1,APX3,APX6,APX7,APX8,GR3,APX5	OsAPX2, OsAPx02, APXb, OsAPx2, OSAPX2, APx2, cAPX, OsAPX1, APX1,OsAPx4, OsAPx04, OSAPX4, APx4, pAPX4,OsAPX1, APXa, OsAPXa, OsAPx01, OsAPx1, OSAPX1, APx1, cAPX, APX2, cAPXa, OscAPXa,OsGR2, RGRC2, OsGR, OsGR3, OsRGRC2,OsGR1, OsGR2,OsAPx3, OsAPx03, OSAPX3, APx3, mAPX,OsAPx6, OsAPx06, OSAPX6, APx6,OsAPx7, OsAPx07, OSAPX7, APx7, sAPX,OsAPx8, OsAPx08, OSAPX8, APx8, OsAPX8,OsGR3,OsAPx5, OsAPx05, OSAPX5, APx5
33496	22199238	Lu S.J., Yang Z.T., Sun L., Sun L., Song Z.T., Liu J.X.	Conservation of IRE1-Regulated bZIP74 mRNA Unconventional Splicing in Rice (Oryza sativa L.) Involved in ER Stress Responses.	Mol Plant	5(2)	504-14	2012	BZIP50,IRE1,BIP5	OsbZIP60, bZIP50, OsbZIP50, OsbZIP74, bZIP74, OsbZIP50-S,OsIRE1, OsIre1,OsBiP5, OsBiP, BiP, BiP5, OsMed37_7, Med37_7
33498	22201023	Hur Y.J., Yi Y.B., Lee J.H., Chung Y.S., Jung H.W., Yun D.J., Kim K.M., Park D.S., Kim D.H.	Molecular cloning and characterization of OsUPS, a U-box containing E3 ligase gene that respond to phosphate starvation in rice (Oryza sativa).	Mol. Biol. Rep.	39(5)	5883-8	2012	UPS	OsUPS, OsPUB41, PUB41, CMPG1, OsCMPG1
33499	22284711	Han B., Xu S., Xie Y.J., Huang J.J., Wang L.J., Yang Z., Zhang C.H., Sun Y., Shen W.B., Xie G.S.	ZmHO-1, a maize haem oxygenase-1 gene, plays a role in determining lateral root development.	Plant Sci.	184	63-74	2012	SE5	Se5, OsHO1, OsHO-1, OsHY1, HO-1, HO1, OsSE5, YGL2, YGL2/HO1
33500	22228185	Lee S., Kim Y.S., Jeon U.S., Kim Y.K., Schjoerring J.K., An G.	Activation of Rice nicotianamine synthase 2 (OsNAS2) enhances iron availability for biofortification.	Mol. Cells	33(3)	269-75	2012	IRT1,YSL15,IRT2,YSL2,NAS2	OsIRT1, ZIP10, OsZIP10, OsZIP12, ZIP12,OsYSL15, OsYs7,OsIRT2, OsIRT1, OsZIP15, ZIP15,OsYSL2, Os-YSL2, OsYs6 ,OsNAS2, OsNAS1
33501	22350999	Endo M., Shimizu T., Toki S.	Selection of transgenic rice plants using a herbicide tolerant form of the acetolactate synthase gene.	Methods Mol. Biol.	847	59-66	2012	ALS	OsALS, AHAS, OsALS1, ALS1
33503	22274888	Gao D.	Identification of an active Mutator-like element (MULE) in rice (Oryza sativa).	Mol. Genet. Genomics	287(3)	261-71	2012	_,_,_,_,_,_,_,_	Os3378-1,Os3378-2,Os3378-3,Os3378-4,,,,
33504	22264357	Kurusu T., Nishikawa D., Yamazaki Y., Gotoh M., Nakano M., Hamada H., Yamanaka T., Iida K., Nakagawa Y., Saji H., Shinozaki K., Iida H., Kuchitsu K.	Plasma membrane protein OsMCA1 is involved in regulation of hypo-osmotic shock-induced Ca2+ influx and modulates generation of reactive oxygen species in cultured rice cells.	BMC Plant Biol.	12	11	2012	DMT1	OsMCA1, MCA1, OsDMT1, OsDMT1/OsMCA1
33505	22228180	Lee S., Ryoo N., Jeon J.S., Guerinot M.L., An G.	Activation of rice Yellow Stripe1-Like 16 (OsYSL16) enhances iron efficiency.	Mol. Cells	33(2)	117-26	2012	YSL9,YSL16,YSL15,YSL2	OsYSL9, OsYs13 ,OsYSL16, Os-YSL16, OsYs14 ,OsYSL15, OsYs7,OsYSL2, Os-YSL2, OsYs6 
33506	22246661	Solt?sz A., V?g?jfalvi A., Rizza F., Kerepesi I., Galiba G., Cattivelli L., Coraggio I., Crosatti C.	The rice Osmyb4 gene enhances tolerance to frost and improves germination under unfavourable conditions in transgenic barley plants.	J. Appl. Genet.	53	133-143	2012	_	OsMYB4, Osmyb4, OsMyb4, MYB4, OsMYB55, MYB55, OsMyb8, MYB8, OsMYB13b, MYB13b, OsMYB15, MYB15, Os2R_MYB46, 2R_MYB46
33507	22247270	Wang Q., Hillwig M.L., Wu Y., Peters R.J.	CYP701A8: a rice ent-kaurene oxidase paralog diverted to more specialized diterpenoid metabolism.	Plant Physiol.	158(3)	1418-25	2012	KO1,KO4,D35,KO5	OsKO1, OSKO1, OSKOL1, OsKOS4, CYP701A7,OsKO4, OsKOL4, KOS1, CYP701A8, OsCYP701A8, OsKO2, CYP701A8/OsKOL4,d35, d35(t), dwf30, OsKOL2, KOL2, KO2, OsKO2, OSKO2, KO, CYP701A, CYP701A6, Os KO2, OsKOL2/CYP701A,OsKO5, OSKOL5, KOS2, OsKOS2, CYP701A9, OsCYP701A9, OsKO1, KO1
33508	22218675	Liu B., Fan J., Zhang Y., Mu P., Wang P., Su J., Lai H., Li S., Feng D., Wang J., Wang H.	OsPFA-DSP1, a rice protein tyrosine phosphatase, negatively regulates drought stress responses in transgenic tobacco and rice plants.	Plant Cell Rep.	31	1021-1032	2012	_,_,GSN1,_,_	OsPFA-DSP3,OsPFA-DSP1, OsPP105,MKP1, OsMKP1, osmkp1, LARGE8, GLA1, OsGLA1,OsPFA-DSP4, OsSTA281,OsPFA-DSP2, OsPP39
33509	22285622	Kim I.A., Kim B.G., Kim M., Ahn J.H.	Characterization of hydroxycinnamoyltransferase from rice and its application for biological synthesis of hydroxycinnamoyl glycerols.	Phytochemistry	76	25-31	2012	HCT1,HCT4,HCT3,HCT2	OsHCT1,OsHCT4,OsHCT3, Os-PHT1, OsPHT1, PHT1,OsHCT2, HCT
33510	22253868	Xia K., Wang R., Ou X., Fang Z., Tian C., Duan J., Wang Y., Zhang M.	OsTIR1 and OsAFB2 downregulation via OsmiR393 overexpression leads to more tillers, early flowering and less tolerance to salt and drought in rice.	PLoS ONE	7(1)	e30039	2012	GIF3,MIR393,TIR1,FBOX206,MRS2-4	OsGIF3, OsGIF1, GIF1, MKB3,OsmiR393, osa-MIR393, osa-MIR393a, OsmiR393a, miR393a ,OsTIR1, OsFbox248, Fbox248, Os_F071, AFB,  OsFBL21, FBL21,OsAFB2, ABF2, OsAFB2-1, OsAFB2-2, OsFbox206, Os_F0492, OsTIR1, TIR1,  OsFBL16, FBL16,OsMGT6, OsMRS2-4
33511	22248237	Shingu Y., Tokai T., Agawa Y., Toyota K., Ahamed S., Kawagishi-Kobayashi M., Komatsu A., Mikawa T., Yamamoto M.T., Wakasa K., Shibata T., Kusano K.	The double-stranded break-forming activity of plant SPO11s and a novel rice SPO11 revealed by a Drosophila bioassay.	BMC Mol. Biol.	13	1	2012	SPO11-4,TOP6A1,TOP6A3,TOP6A2	OsSPO11-4, OsSPO11D,OsTOP6A1, OsSPO11-1, OsSPO11A, SPO11-1,OsTOP6A3, OsSPO11-3, OsSPO11C,OsTOP6A2, OsSpo11-2, OsSPO11-2, OsSPO11B, SPO11-2
33513	22226678	Zhou S., Sawicki A., Willows R.D., Luo M.	C-terminal residues of oryza sativa GUN4 are required for the activation of the ChlH subunit of magnesium chelatase in chlorophyll synthesis.	FEBS Lett.	586(3)	205-10	2012	YGL98,GUN4,CHLH,ELL	OsChlD, ChlD, CHLD, OsCHLD, Ygl7, YGL3, OsvWA12, vWA12,OsGUN4,OsChlH, ChlH, OsCHLH,chlI, OsChlI, ChlI, CHLI, OsCHLI, OsCHLI/ELL, OsELL
33514	22286138	Tanaka W., Toriba T., Ohmori Y., Yoshida A., Kawai A., Mayama-Tsuchida T., Ichikawa H., Mitsuda N., Ohme-Takagi M., Hirano H.Y.	The YABBY gene TONGARI-BOUSHI1 is involved in lateral organ development and maintenance of meristem organization in the rice spikelet.	Plant Cell	24(1)	80-95	2012	YAB5	OsYABBY5, OsYAB3, YAB3, Os YABBY5, TOB1, OsTPB1
33515	22286805	Hong L., Qian Q., Tang D., Wang K., Li M., Cheng Z.	A mutation in the rice chalcone isomerase gene causes the golden hull and internode 1 phenotype.	Planta	236(1)	141-51	2012	CHI3	gh1, GH1, OsGH1, OsCHI, Cfi, CHI, OsCHI3
33516	22341501	Sansenya S., Maneesan J., Cairns J.R.	Exchanging a single amino acid residue generates or weakens a +2 cellooligosaccharide binding subsite in rice beta-glucosidases.	Carbohydr. Res.	351	130-3	2012	BGLU7,BGLU6,BGLU12	Os3bglu7, Os3BGlu7, 3BGLU7, BGlu7, BGlu1, bglu1,Os3bglu6, Os3BGlu6, 3BGlu6,Os4bglu12, Os4BGlu12, 4BGlu12, OsTAGG2, TAGG2
33517	22368778	Ishimaru Y., Takahashi R., Bashir K., Shimo H., Senoura T., Sugimoto K., Ono K., Yano M., Ishikawa S., Arao T., Nakanishi H., Nishizawa N.K.	Characterizing the role of rice NRAMP5 in Manganese, Iron and Cadmium Transport.	Sci Rep	2	286	2012	LCD1,ZIP3,YSL15,YSL2	NRAMP5, OsNRAMP5, OsNramp5, OsLCD1,OsZIP3,OsYSL15, OsYs7,OsYSL2, Os-YSL2, OsYs6 
33518	22262313	Chen Y.H., Chao Y.Y., Hsu Y.Y., Hong C.Y., Kao C.H.	Heme oxygenase is involved in nitric oxide- and auxin-induced lateral root formation in rice.	Plant Cell Rep.	31	1085-1091	2012	SE5	Se5, OsHO1, OsHO-1, OsHY1, HO-1, HO1, OsSE5, YGL2, YGL2/HO1
33519	22247560	Yang Y., Ishino S., Yamagami T., Kumamaru T., Satoh H., Ishino Y.	The OsGEN-L protein from Oryza sativa possesses Holliday junction resolvase activity as well as 5'-flap endonuclease activity.	J. Biochem.	151(3)	317-27	2012	RAD,PCNA	rad,rad*, OsRAD, GEN1, OsGEN-L, OsGEN1 ,OsPCNA
33520	22448275	Liu J., Zhou J., Xing D.	Phosphatidylinositol 3-Kinase Plays a Vital Role in Regulation of Rice Seed Vigor via Altering NADPH Oxidase Activity.	PLoS ONE	7(3)	e33817	2012	_,_,_,_,_,_,_,_,_,_	Os rboh6,PI3K,Os rboh1,Os rboh2,Os rboh3,Os rboh4,Os rboh5,Os rboh7,Os rboh8,Os rboh9
33521	22308482	Ding J., Lu Q., Ouyang Y., Mao H., Zhang P., Yao J., Xu C., Li X., Xiao J., Zhang Q.	A long noncoding RNA regulates photoperiod-sensitive male sterility, an essential component of hybrid rice.	Proc. Natl. Acad. Sci. U.S.A.	109(7)	2654-9	2012	PMS3	pms3, LDMAR
33522	22278768	Distelfeld A., Pearce S.P., Avni R., Scherer B., Uauy C., Piston F., Slade A., Zhao R., Dubcovsky J.	Divergent functions of orthologous NAC transcription factors in wheat and rice.	Plant Mol. Biol.	78(4-5)	515-24	2012	NAC10	ONAC010, ONAC10, OsSTA199, OsNAC3, NAC3
33523	22247252	Hu J., Wang K., Huang W., Liu G., Gao Y., Wang J., Huang Q., Ji Y., Qin X., Wan L., Zhu R., Li S., Yang D., Zhu Y.	The rice pentatricopeptide repeat protein Rf5 restores fertility in Hong-Lian cytoplasmic male-sterile lines via a complex with the glycine-rich protein GRP162.	Plant Cell	24(1)	109-22	2012	_,_,_,GRP162,RF1	PPR794, PPR6, PPR6-794, PPR5,atp6-orfH79,PPR683, PPR5, PPR5-683,OsGRP162,Rf1 (Rf-1), rf-1, PPR791, PPR8-1, Rf-1, Rf1, Rf-1A, Rf5, Rf1a, RF5, Rf5(t)*(Rf(t)*), RF1A, PPR6, PLS31, OsPLS31
33524	22195590	Awasthi A., Paul P., Kumar S., Verma S.K., Prasad R., Dhaliwal H.S.	Abnormal endosperm development causes female sterility in rice insertional mutant OsAPC6.	Plant Sci.	183	167-74	2012	APC6	OsAPC6
33525	22367534	De Pino V., Marino Busjle C., Moreno S.	Oligomerization of the reversibly glycosylated polypeptide: its role during rice plant development and in the regulation of self-glycosylation.	Protoplasma	250(1)	111-9	2013	_,_	OsRGP1, C1RGP,OsRGP2, C2RGP
33526	22301130	Tang N., Zhang H., Li X., Xiao J., Xiong L.	Constitutive Activation of Transcription Factor OsbZIP46 Improves drought tolerance in Rice.	Plant Physiol.	158(4)	1755-68	2012	SAPK10,SAPK7,SAPK1,SAPK2,SAPK3,SAPK5,SAPK6,SAPK8,SAPK4,SAPK9,RAB16A,BZIP23,BZIP46	OsSAPK10, OsSnRK2.10, SnRK2.10,OsSAPK7, OsSnRK2.7, SnRK2.7,OsSAPK1, OsSnRK2.1, SnRK2.1,OsSAPK2, OsSnRK2.2, SnRK2.2,OsSAPK3, REK, OsSnRK2.3, SnRK2.3,OsSAPK5, OsSnRK2.5, SnRK2.5,OsSAPK6, OSRK1, OsSnRK2.6, SnRK2.6,OsSAPK8, OsSnRK2.8, SnRK2.8,OsSAPK4, OsSnRK2.4, SnRK2.4,OsSAPK9, OsSnRK2.9, SnRK2.9,Rab16A, rab21, RAB21, OsRab21, OsRAB21, OsRAB-21, OsRab16A, OsLEA29, rab16A, OsRAB16A,OsbZIP23, OsAREB1, OsABF2, Osbzip23, OsAREB2, OsZIP23, ZIP23,ABL1, bZIP46, OsABL1, OsbZIP46, OsAREB8, OsABF2, ABF2, OsABF3, ABF3, OsbZIP46CA1, OsZIP46, ZIP46, OsbZIP46/OsABF2
33527	22362377	Lu L., Zhou F., Zhou Y., Fan X., Ye S., Wang L., Chen H., Lin Y.	Expression profile analysis of the polygalacturonase-inhibiting protein genes in rice and their responses to phytohormones and fungal infection.	Plant Cell Rep.	31(7)	1173-87.	2012	FOR1,PGIP7,PGIP6,PGIP1,PGIP2,PGIP3,PGIP4	OsFOR1, Osfor1, OsPGIP5, PGIP5,Ospgip7, pgip7, OsPGIP7,Ospgip6, pgip6, OsPGIP6,Ospgip1, pgip1, OsPGIP1,Ospgip2, pgip2, OsPGIP2,Ospgip3, pgip3, OsPGIP3,Ospgip4, pgip4, OsPGIP4
33528	22302312	Singh A.K., Kumar R., Pareek A., Sopory S.K., Singla-Pareek SL.	Overexpression of Rice CBS Domain Containing Protein Improves Salinity, Oxidative, and Heavy Metal Tolerance in Transgenic Tobacco.	Mol. Biotechnol.	52(3)	205-16	2012	CBSX4	OsCBSX4, OsCBSX4a, OsCBSX4b, OsCBSX4c, OsCBSX4d, OsCBSX4e, OsCBSX4f
33529	22367482	Paul P., Awasthi A., Rai A.K., Gupta S.K., Prasad R., Sharma T.R., Dhaliwal H.S.	Reduced tillering in Basmati rice T-DNA insertional mutant OsTEF1 associates with differential expression of stress related genes and transcription factors.	Funct. Integr. Genomics	12(2)	291-304	2012	_	OsTEF1
33530	22370743	Marla S.S., Singh V.K.	LOX genes in blast fungus (Magnaporthe grisea) resistance in rice.	Funct. Integr. Genomics	12(2)	265-75	2012	LOX8,R9-LOX1,_,LOX12,LOX10,LOX11,LOX3,LOX1,SPH,LOX1,LOX2,LOX7	OsLOX8, OsLOX9, LOX9, OsLOX2;3, LOX2;3, OsLOX2, OsLOX1, CM-LOX8,Osr9-LOX1, OsLOX3, LOX3,Lox2:Os:1, OsLOX9, LOX9, OsLOX8, LOX8, OsLOX2, LOX2, OsRLL, OsHI-LOX, HI-LOX, RLL2 LOX, RLL2, Lox2osPil, OsLOX2;1, LOX2;1, OsLOX1, OsLOX7, LOX7,OsLOX12,OsLOX10, OsLOX3, LOX3,OsLOX11, OsRCI-1, RCI-1, OsBphi262, OsLOX12, OsLOX2.2, LOX2.2, LOX2.1, OsLOX2.1, OsLOX14, LOX14,Lox3*, lox3(t), LOX-3, Lox3, OsLOX4, LOX4,OsLOX1, OsLOX5,OsLOX6, LOX6, LOX5, OsLOX5,OsLOX1, OsLOX5, OsLOX2, LOX2,OsLOX2, OsLOX6, LOX6,OsLOX7, LOX6, OsLOX6
33531	22435142	Soren K.R., Ali K., Tyagi A.	Cloning and characterization of a gene encoding novel zinc finger protein transcription factor induced under water deficit stress from rice (Oryza sativa) cv. N-22.	Indian J. Biochem. Biophys.	49(1)	36-41	2012	_	OsZnI
33532	22367483	Thalapati S., Batchu A.K., Neelamraju S., Ramanan R.	Os11Gsk gene from a wild rice, Oryza rufipogon improves yield in rice.	Funct. Integr. Genomics	12(2)	277-89	2012		
33533	22321692	Zou J., Liu C., Liu A., Zou D., Chen X.	Overexpression of OsHsp17.0 and OsHsp23.7 enhances drought and salt tolerance in rice.	J. Plant Physiol.	169(6)	628-35	2012	HSP23.7,HSP16.9B	OsHsp23.7, OsHSP23.7,Oshsp16.9B, OsHsp16.9B, HSP16.9B, OsHsp17.0, OsHSP16.9B-CI, OsHSP17.0, Hsp17.0, OsSHSP2, OsSTA3
33534	10769179	C Curie, J M Alonso, M Le Jean, J R Ecker, J F Briat	Involvement of NRAMP1 from Arabidopsis thaliana in iron transport.	Biochem. J.	347 Pt 3	749-55	2000	NRAMP1,NRAMP2,NRAMP3	OsNramp1, OsNRAMP1, OsNramp6,OsNramp2, OsNRAMP2,OsNramp3, OsNRAMP3
33535	16359387	Kobayashi Y., Murata M., Minami H., Yamamoto S., Kagaya Y., Hobo T., Yamamoto A., Hattori T.	Abscisic acid-activated SNRK2 protein kinases function in the gene-regulation pathway of ABA signal transduction by phosphorylating ABA response element-binding factors.	Plant J.	44(6)	939-49	2005	SAPK8,SAPK10,TRAB1,SAPK9	OsSAPK8, OsSnRK2.8, SnRK2.8,OsSAPK10, OsSnRK2.10, SnRK2.10,OsbZIP66, OsABF5, Osbzip66, OsTRAB1, bZIP66, ABF5,OsSAPK9, OsSnRK2.9, SnRK2.9
33536	22332708	Pu C.X., Ma Y., Wang J., Zhang Y.C., Jiao X.W., Hu Y.H., Wang L.L., Zhu Z.G., Sun D., Sun Y.	Crinkly4 receptor-like kinase is required to maintain the interlocking of the palea and lemma, and fertility in rice, by promoting epidermal cell differentiation.	Plant J.	70(6)	940-53	2012	SL1,CRR1,CRR2,CCR3,CRR4,MIS2,MFO1	sl1(t), sl1, stl1, opb, OPB1, ps, PS, OPB, DLN2, OsDLN2, OsJAG, JAG, OsJAG.1, OsJAG.2, ZOS1-02, OsZOS1-02,OsCRR1,OsCRR2,OsCRR3,OsCRR4,OsCR4, CR4, OsMIS2,OsMADS6, MADS6, OsMFO1
33537	22195592	Sato H., Yoshida K., Mitsuda N., Ohme-Takagi M., Takamizo T.	Male-sterile and cleistogamous phenotypes in tall fescue induced by chimeric repressors of SUPERWOMAN1 and OsMADS58.	Plant Sci.	183	183-9	2012	SPW1,RAG,MADS58	SPW1, spw1, MADS16, OsMADS16,MADS3, OsMADS3, OsMADS3(t), RMADS222, RAG1, rf3,OsMADS58
33539	22353606	Chern M., Bai W., Sze-To WH., Canlas P.E., Bartley L.E., Ronald P.C.	A rice transient assay system identifies a novel domain in NRR required for interaction with NH1/OsNPR1 and inhibition of NH1-mediated transcriptional activation.	Plant Methods	8(1)	6	2012	NH1,RH3,RH1,RH2,NRR	OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2, DLN5, OsDLN5,  OsBTBA1, BTBA1,OsRH3,OsRH1,OsRH2,OsNRR, OsNRR1, NRR1
33540	22319054	Hong L., Tang D., Zhu K., Wang K., Li M., Cheng Z.	Somatic and reproductive cell development in rice anther is regulated by a putative glutaredoxin.	Plant Cell	24(2)	577-88	2012	BZIP41,MEL2,AM1,MIL1 ,TOP6A1,SDS,PAIR1,RAD21-4,RMC1,MEL1,ZEP1	OsbZIP41, TGA1 ,OsMEL2,  OsRING430, RING430,OsAM1, SWI1, Osam1,MIL1, mil1,OsTOP6A1, OsSPO11-1, OsSPO11A, SPO11-1,OsSDS, Orysa;SDS,Pair1, OsPAIR1,OsRad21-4, REC8, OsREC8, OsRAD21-4,MER3, mer3, OsMER3, RCK, OsRCK, Os-MER3,mel1, OsMEL1, MEAL1, OsMEAL1, OsAGO5c ,OsZEP1
33541	22301384	Yang A., Dai X., Zhang W.H.	A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice.	J. Exp. Bot.	63	2541-2556	2012	LEA3-1,_,RAB16A,2R_MYB36 ,MYB3R2,MYBS3,DREB2A	OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3, OsLEA3A, LEA3A,OsMYB4, Osmyb4, OsMyb4, MYB4, OsMYB55, MYB55, OsMyb8, MYB8, OsMYB13b, MYB13b, OsMYB15, MYB15, Os2R_MYB46, 2R_MYB46,Rab16A, rab21, RAB21, OsRab21, OsRAB21, OsRAB-21, OsRab16A, OsLEA29, rab16A, OsRAB16A,OsMYB2, MYB2, Os2R_MYB36 ,OsMYB3R-2, OsMYB3R2, OsMSL07, MSL07, MSL7, DLN28, OsDLN28,OsMYBS3,OsDREB2A, OsDREB2a, ERF40, OsERF#040, OsERF040, OsERF40, AP2/EREBP#167, AP2/EREBP167
33542	22451723	Zhang W., Zhou X., Wen C.K.	Modulation of ethylene responses by OsRTH1 overexpression reveals the biological significance of ethylene in rice seedling growth and development.	J. Exp. Bot.	63(11)	4151-64	2012	_,_,_	OsRTH2, RTH2,OsRTH3, RTH3,OsRTH1, RTH1
33543	22466020	Sharma R., Agarwal P., Ray S., Deveshwar P., Sharma P., Sharma N., Nijhawan A., Jain M., Singh A.K., Singh V.P., Khurana J.P., Tyagi A.K., Kapoor S.	Expression dynamics of metabolic and regulatory components across stages of panicle and seed development in indica rice.	Funct. Integr. Genomics	12(2)	229-48	2012	RTS,MORE1I,MSP,AGO3	RTS, RTS2,XYH, OsMORE1i,OsSub42, SUB42, OsSP2, OS-MSP, OsMSP,OsAGO3
33544	22380881	Moritoh S., Eun C.H., Ono A., Asao H., Okano Y., Yamaguchi K., Shimatani Z., Koizumi A., Terada R.	Targeted disruption of an orthologue of DOMAINS REARRANGED METHYLASE2, OsDRM2, impairs the growth of rice plants by abnormal DNA methylation.	Plant J.	71(1)	85-98	2012	DRM1B,DRM2,DRM1A	OsDRM1b,OsDRM2, osdrm2, DRM2-1,OsDRM1a
33545	22428987	Wu H.C., Luo D.L., Vignols F., Jinn T.L.	Heat shock-induced biphasic Ca(2+) signature and OsCaM1-1 nuclear localization mediate downstream signalling in acquisition of thermotolerance in rice (Oryza sativa L.).	Plant Cell Environ.	35	1543-1557	2012	HSP18.0,HSP17.4-CI,HSP16.9A,_,CALB,HSP80.2,CALA,HSP16.9C,HSP17.9A,HSP18.0-CII,HSP18.0-CIII,HSP17.7,CAM1-1,CAM1-3	OsHSP18.0-CI, HSP18.0-CI, OsHsp18.0, OsHSP18.0, Oshsp18.0, OsSHSP1, SHSP1, OsMSR3, MSR3, OsHSP20, HSP20, OsHSP18.6, HSP18.6,OsHSP17.4-CI,Oshsp16.9A, OsHsp16.9A, HSP16.9A, OsHSP16.9A-CI,OsCaM3, OsCam3, CaM3,CALb*, Cal2, CAM1-2, CAM, CaM-1, OsCam1-2, OsCaM1-2,OsHsp80.2, OsHSP80.2,CALa*, Cal1, CaM-2, CAM2, CAM, OsCaM2, OsCam2, OsCaM1, CaM1,Oshsp16.9C, OsHsp16.9C, HSP16.9C, OsHSP16.9C-CI, Oshsp 16.9C,Oshsp17.9A, OsHsp17.9A, OsHSP17.9A-CI, Oshsp17.9,OsHSP18.0-CII, Oshsp18.0-CII, OsHSP18.0, OsHSP18.2,OsHSP18.0-CIII,OsHsp17.7, OsHSP17.4-CI, OsHSP17.7, Oshsp17.7,OsCaM1, OsCam1-1, OsCaM1-1, CAM3, Cam1-1, OsCAM1.1, CAM1.1,OsCam1-3, OsCaM1-3, CAM1
33546	22434193	Xu C., Wang Y., Yu Y., Duan J., Liao Z., Xiong G., Meng X., Liu G., Qian Q., Li J.	Degradation of MONOCULM 1 by APC/C(TAD1) regulates rice tillering.	Nat Commun	3	750	2012	MOC1,_,TAD1	moc1, OsMOC1, OsGRAS-33, OsGRAS33, GRAS-33, GRAS33, GNP6, OsGNP6,OsAPC10,TAD1, OsCCS52A, TE, OsWD40-61, TAD1/TE, CCS52A1 ,  OsCCS52A1/TE/TAD1, CCS52A1/TE/TAD1, OsCDH1A, CDH1A
33547	22408075	Hofmann N.R.	SHAT1, A New Player in Seed Shattering of Rice.	Plant Cell	24(3)	839	2012	SHAT1	OsSHAT1, AP2/EREBP#043, AP2/EREBP43, AP2-5, DLN124, OsDLN124, ObSHAT1, OgSHAT1, OrSHAT1 
33548	22442415	Liu D., Chen X., Liu J., Ye J., Guo Z.	The rice ERF transcription factor OsERF922 negatively regulates resistance to Magnaporthe oryzae and salt tolerance.	J. Exp. Bot.	63	3899-3912	2012	NCED1,NCED3,ERF92	OSNCED1, OsNCED-1, OsNCED3, OsNced3, NCED3, OsNCED9, NCED9,OSNCED3, OsNCED-3, OsNCED3, OsNCED3a, NCED3a, OsNCED4, NCED4, OsNECD2, OsNCED2b, NCED2b ,OsERF#092, OsERF092, OsERF92, ERF922, OsERF922, AP2/EREBP#078, AP2/EREBP78
33549	22248149	Xie G., Kato H., Imai R.	Biochemical identification of the OsMKK6-OsMPK3 signalling pathway for chilling stress tolerance in rice1.	Biochem. J.	443(1)	95-102	2012	MPK6,BWMK1,_,MPK20-1,MPK16,MPK17,MKK6,MAP3,WJUMK1,MSRMK2,DSG1	OsMPK6, OsDR6, DR6, OsMPK4, MPK4, OsMAPK4, MAPK4,OsBWMK1, MPK12, MAPK1, OsMAPK1, OsMPK12, OsMPK17-1, MPK17-1, OsBWMK1L, OsBWMK1M, OsBWMK1S, OsMAPK17-1, MAPK17-1, MAPK12, OsMAPK12,OsMPK20-3, MPK20-3, OsMAPK11, MAPK11,OsMPK20-1, OsMAPK10, MAPK10,OsMPK16, OsMPK15, MPK15, OsMAPK16, MAPK16,OsMPK17, OsMPK21-1, MPK21-1,OsMKK6, OsMEK1, MEK1, OsMAPKK6, MAPKK6, OsMPKK6, MPKK6, OsMAP1, MAP1,OsMAPK33, OsMPK14, OsMAPK2, OsMAP3, OsMAPK14, OsMPK3, MAPK33, MPK14, MAPK2, MAPK14, MPK3, OsMAPK3, MAPK3,OsMPK20-4, MPK20-4, OsWJUMK, OsWJUMK1, WJUMK, MAPK8, OsMPK8, MPK8, OsMAPK20-4, MAPK20-4, OsMPKG1, MPKG1,OsMSRMK2, OsMAPK5, OsMAP1, OsMPK3, OsBIMK1, OsMAPK2, MPK5, BIMK1, MAPK2, MAPK5, MPK3, OsMPK5, OsMAPK3, OsMAPK5b, MAPK3,OsMAPK6, MAPK6, OsMPK6, OsSIPK, SIPK, OsMAPK1, MAPK1, MPK1, OsMPK1, MPK6, OsDSG1
33550	22422982	Alder A., Jamil M., Marzorati M., Bruno M., Vermathen M., Bigler P., Ghisla S., Bouwmeester H., Beyer P., Al-Babili S.	The path from beta-carotene to carlactone, a strigolactone-like plant hormone.	Science	335(6074)	1348-51	2012	D27,D10	d27(d t), dt, dwf23, d27, OsD27,d10(d15,d16), d16, d15, dwf9, d10, OsCCD8b, OsCCD8, CCD8, OsD10
33551	22445891	Phanchaisri B., Samsang N., Yu L., Singkarat S., Anuntalabhochai S.	Expression of OsSPY and 14-3-3 genes involved in plant height variations of ion-beam-induced KDML 105 rice mutants.	Mutat. Res.	734(1-2)	56-61	2012	GF14F,SLR1,SPY,KO4,RSG	GF14f, SR14-3-3, OsGF14f, S94, ric1, 14-3-3f,slr1-1, slr1, slr, GAI, OsGAI, OsSLR1, Os SLR1, OsRGA1, OsGRAS-18, OsGRAS-18, GRAS-18, GRAS18, SLR-1,OsSPY,OsKO4, OsKOL4, KOS1, CYP701A8, OsCYP701A8, OsKO2, CYP701A8/OsKOL4,OsbZIP84, BZIP84
33552	22493492	Shimizu T., Lin F., Hasegawa M., Okada K., Nojiri H., Yamane H.	Purification and identification of naringenin 7-O-methyltransferase, a key enzyme in the biosynthesis of the flavonoid phytoalexin sakuranetin in rice.	J. Biol. Chem.	287(23)	19315-25	2012	NOMT,ROMT9	OsNOMT, COMTL3, OsCOMTL3, OsCOMT29, COMT29,COMT, OsCOMT, ROMT-9, OsCOMT1, OsCAldOMT1, CAldOMT1, OsOMT, OsCOMT15, COMT15
33553	22486829	Cai Y., Zhuang X., Wang J., Wang H., Lam S.K., Gao C., Wang X., Jiang L.	Vacuolar degradation of two integral plasma membrane proteins, AtLRR84A and OsSCAMP1, is cargo ubiquitination-independent and prevacuolar compartment-mediated in plant cells.	Traffic	13(7)	1023-40	2012	SCAMP1	Scamp1, OsSCAMP1
33554	22507309	Ji J., Tang D., Wang K., Wang M., Che L., Li M., Cheng Z.	The role of OsCOM1 in homologous chromosome synapsis and recombination in rice meiosis.	Plant J.	72(1)	18-30	2012	PAIR2,AM1,COM1,RMC1,RAD21-4,PAIR3,TOP6A1,ZEP1	Pair2, OsPAIR2, OsASY1,OsAM1, SWI1, Osam1,OsCOM1,MER3, mer3, OsMER3, RCK, OsRCK, Os-MER3,OsRad21-4, REC8, OsREC8, OsRAD21-4,,OsTOP6A1, OsSPO11-1, OsSPO11A, SPO11-1,OsZEP1
33555	22505428	Miyazono K.I., Koura T., Kubota K., Yoshida T., Fujita Y., Yamaguchi-Shinozaki K., Tanokura M.	Purification, crystallization and preliminary X-ray analysis of OsAREB8 from rice, a member of the AREB/ABF family of bZIP transcription factors, in complex with its cognate DNA.	Acta Crystallogr. Sect. F Struct. Biol. Cryst. Commun.	68(Pt 4)	491-4	2012	BZIP46	ABL1, bZIP46, OsABL1, OsbZIP46, OsAREB8, OsABF2, ABF2, OsABF3, ABF3, OsbZIP46CA1, OsZIP46, ZIP46, OsbZIP46/OsABF2
33556	22465006	Chattopadhyay T., Bhattacharyya S., Das A.K., Maiti M.K.	A structurally novel hemopexin fold protein of rice plays role in chlorophyll degradation.	Biochem. Biophys. Res. Commun.	420(4)	862-8	2012	HFP	OsHFP
33557	22427359	Gustafson M., Farrugia A.	Albumin from rice: Why and wherefore?	Proc. Natl. Acad. Sci. U.S.A.	109(14)	E775	2012		
33558	22429805	Ouyang Y., Huang X., Lu Z., Yao J.	Genomic survey, expression profile and co-expression network analysis of OsWD40 family in rice.	BMC Genomics	13(1)	100	2012	_,ASP1,TAD1,FIE2,SRWD1,SRWD2,SRWD4,PHF1,_,SRWD3,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,WD40-128,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,RLCK316,_,_,_,RLCK318,_,_,WD40-194,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,SRWD5,KRN2,EHD5,WD40-171,WD40-109,SERL7,RACK1B,WD40-198,GORI,MSI1,WD40-77,ATG18D,WD40-167,PUB72,DRW1,ATG18F,WD40-169,WD40-156,SLG2,WD40-45,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,CBE1,WD40-58,CCS52B,PUB71,WD40-24,TTG1A,SCD1,FVE,ATG18A,CDC20.1,WD40-69,SEH1,WD40-14,WD40-12,C3H17,ATG18C,ATG18B,WD40-66,_,FIE1,ATG18E,RACK1,PPS,RGB1,CYP71,WD40-190,PHF1L	OsWD40-174, WD40-174,OsLIS-L1, OsWD40-155, ASP1, TPR2, OsTPR2, OsREL2, REL2, OsTPL3, TPL3, OsTPL2, TPL2, ASP-LSL,TAD1, OsCCS52A, TE, OsWD40-61, TAD1/TE, CCS52A1 ,  OsCCS52A1/TE/TAD1, CCS52A1/TE/TAD1, OsCDH1A, CDH1A,OsFIE2, FIE, OsWD40-153,  OsDWD46, DWD46,SRWD1, OsWD40-162,  OsDWD57, DWD57,SRWD2, OsWD40-52,SRWD4, OsWD40-160,  OsDWD56, DWD56,OsPHF1, OsWD40-137, OsSEC12,OsWD40-158,SRWD3, OsWD40-126,  OsDWD54, DWD54,OsWD40-76,  OsDWD66, DWD66,OsWD40-82,  OsDWD19, DWD19,OsWD40-87,OsWD40-88,OsWD40-91,  OsDWD24, DWD24,OsWD40-98,OsWD40-99,OsWD40-100,OsWD40-104,OsWD40-105,OsWD40-107,OsWD40-111,  OsDWD43, DWD43,OsWD40-112,OsWD40-113,  OsDWD34, DWD34,OsWD40-117,OsWD40-124,OsWD40-127,OsWD40-128,  OsDWD18, DWD18, OsEDC4, EDC4,OsWD40-129,OsWD40-130,OsWD40-131,OsWD40-132,OsWD40-133,  OsDWD71, DWD71,OsWD40-134,OsWD40-135,  OsDWD48, DWD48,OsWD40-139,OsWD40-140,  OsDWD37, DWD37,OsWD40-141,  OsDWD40, DWD40,OsWD40-142,  OsDWD11, DWD11,OsWD40-143,OsWD40-145,OsWD40-146,  OsDWD14, DWD14,OsWD40-147,  OsDWD44, DWD44,OsWD40-136,OsWD40-148,OsWD40-149,  OsDWD30, DWD30,OsWD40-150,OsWD40-151,OsWD40-152,OsWD40-157,OsWD40-163,OsWD40-165,OsWD40-168,OsWD40-170,  OsDWD16, DWD16,OsWD40-172,OsWD40-175,  OsDWD20, DWD20,OsWD40-176,  OsDWD25, DWD25,OsWD40-177,OsWD40-180,OsWD40-181,OsWD40-182,  OsDWD45, DWD45,OsWD40-187,OsWD40-189,  OsDWD21, DWD21,OsWD40-110, OsFbox233, Os_F0069,  OsFBW1, FBW1,OsWD40-123, OsSPA1,  OsDWD76, DWD76,OsWD40-186, OsRLCK316,  OsDWD70, DWD70,OsWD40-179, OsKTN80a,  OsDWD9, DWD9,OsWD40-125,OsWD40-184, OsFbox571, Os_F0380,  OsFBW2, FBW2,OsWD40-188, OsRLCK318,OsWD40-191,OsWD40-192,OsWD40-194,  OsDWD12, DWD12, OsWDR48,OsWD40-195,OsWD40-197,OsWD40-193, RIP1,OsWD40-199,OsWD40-200,  OsDWD50, DWD50,OsWD40-4,OsWD40-74,  OsDWD39, DWD39,OsWD40-78,  OsDWD73, DWD73,OsWD40-84,OsWD40-85,OsWD40-92,OsWD40-93,OsWD40-95,OsWD40-96,OsWD40-101,OsWD40-102,  OsDWD33, DWD33,OsWD40-108,  OsDWD61, DWD61,OsWD40-183, OsSTA251,OsWD40-185, OsSTA253,OsWD40-196, OsSTA276,OsWD40-173, WD40-173, OsMed4_1, Med4_1 ,  OsDWD4, DWD4,OsWD40-116, OseIF3i, eIF3i, EIF3I,  OsDWD52, DWD52,OsWD40-115,OsWD40-119,  OsDWD17, DWD17,OsWD40-120,OsWD40-121,  OsDWD15, DWD15,OsWD40-35,OsWD40-36,OsWD40-37,OsWD40-38,OsWD40-39,  OsDWD3, DWD3,OsWD40-86, WD40-86, OsWDR5a, WDR5a, OsWDR5, WDR5,  OsDWD41, DWD41,OsWD40-90, WD40-90,OsWD40-144, WD40-144, OsWDR5b, WDR5b,  OsDWD28, DWD28,OsWD40-83, WD40-83, OsCDT2, CDT2,  OsDWD58, DWD58,OsWD40-75,OsWD40-41,OsWD40-42,  OsDWD51, DWD51,OsWD40-43,  OsDWD7, DWD7,OsWD40-44,OsSRWD5, OsWD40-73,  OsDWD55, DWD55,OsWD40-106, WD40-106, OsKRN2,OsWD40-161, WD40-161, Ehd5, OsEhd5,OsWD40-171,  OsDWD63, DWD63, OsDWD1, DWD1,OsWD40-109, OsCDC20, CDC20, CDC20.1, OsCDC20.1,  OsCDC20-2, CDC20-2, OsCDC20B, CDC20B,OsWD40-138, OsSERL7,  OsDWD29, DWD29,OsWD40-122, WD40-122, OsRACK1B,OsWD40-198,OsWD40-89, WD40-89, OsGORI, OsABT, ABT,OsWD40-79, OsMSI1, WD40-79,  OsDWD1, DWD1,OsWD40-77,OsATG18d, OsWD40-114 ,OsWD40-167, CDC20.3, OsCDC20.3,  OsCDC20-1, CDC20-1,OsWD40-178, OsPUB72,  OsDWD6, DWD6,  OsPUB72, PUB72,OsWD40-166, WD40-166, OsDRW1,  OsDWD47, DWD47,OsATG18f, OsWD40-118 ,OsWD40-169,  OsDWD59, DWD59, HSLG2, OsHSLG2,OsWD40-156,OsWD40-40, WD40-40, OsDWD60, DWD60, OsSLG2,OsWD40-45, OsSGW5, SGW5,OsWD40-46,  OsDWD27, DWD27,OsWD40-5,  OsDWD13, DWD13,OsWD40-7,  OsDWD35, DWD35,OsWD40-8,OsWD40-10,OsWD40-11,  OsDWD22, DWD22,OsWD40-13,  OsDWD62, DWD62,OsWD40-15,  OsDWD64, DWD64,OsWD40-20,  OsDWD67, DWD67,OsWD40-22,OsWD40-25,OsWD40-28,OsWD40-29,OsWD40-31,OsWD40-53,  OsDWD23, DWD23,OsWD40-54,OsWD40-57,  OsDWD65, DWD65,OsWD40-59,OsWD40-60,  OsDWD69, DWD69,OsWD40-62,OsWD40-63,OsWD40-64,  OsDWD49, DWD49,OsWD40-65,OsWD40-67,OsWD40-68,OsWD40-70,  OsDWD2, DWD2,OsWD40-71,OsWD40-72,OsWD40-103,OsWD40-26, OsKTN80c,  OsDWD8, DWD8,OsWD40-34, OsRUP,  OsDWD72, DWD72,OsWD40-97,OsWD40-2, UV-DDB2, OsUV-DDB2 ,  OsDWD10, DWD10,OsWD40-48, OsSTA70,OsWD40-47,OsWD40-32, OsFY, FY,  OsDWD32, DWD32,OsWD40-81, OsLST8, LST8,  OsDWD26, DWD26,OsWD40-18, WD40-18, LUG, DLN14, OsDLN14,OsWD40-1, WD40-1, OsWD40, WD40,  OsDWD68, DWD68,OsWD40-17, OsLUGL, LUGL, KKX, OsKKX,OsWD40-6, OsCBE1,OsWD40-58,OsWD40-33, WD40-33, OsCCS52B,  OsCCS52B, CCS52B, OsCDH1B, CDH1B,OsWD40-9, OsPUB71,  OsPUB71, PUB71,OsWD40-24, OsSPA3/4,  OsDWD75, DWD75,OsWD40-50, WD40-50, OsTTG1A, OsTTG1, TTG1 ,OsWD40-16, WD40-16, OsSCD1,  OsDWD31, DWD31,OsWD40-23, WD40-23, OsFVE,  OsDWD5, DWD5,OsATG18a, OsWD40-56 ,OsWD40-51, OsCDC20.1, WD40-51, CDC20.1, CDC20.2, OsCDC20.2,  OsCDC20-3, CDC20-3, OsCDC20A, CDC20A,OsWD40-69, OsBrd6, Brd6,OsWD40-19, WD40-19, OsSEH1,OsWD40-14, OsDWD36, DWD36,OsWD40-12, TPR1, OsTPR1,OsC3H17, OsWD40-49 ,OsATG18c, OsWD40-30 ,OsATG18b, OsWD40-3 ,OsWD40-66, TPR3, OsTPR3, TPR1, OsTRP1, OsTPR3, OsTPL2, TPL2, OsTPL, TPL,OsWD40-159, Cen8.t00757, OseIF3i, eIF3i, EIF3I,  OsDWD53, DWD53,OsFIE1, OsWD40-154, OsEnS-116, OsFIE1/OsWD40-154, WD40-154 ,OsATG18e, OsWD40-27 ,RACK1A, RWD, OsWD40-21, OsRACK1, OsRACK1A,OsWD40-55, OsCOP1, COP1, YEL, OsYEL, OsPPS, COP1-1, OsCOP1-1,  OsRING347, RING347,OsWD40-80, RGbeta1, OsRGB1,  OsDWD38, DWD38,OsCYP71, OsWD40-164, OsCYP-22, OsCYP71a, OsCYP71b,OsWD40-190,OsPHF1L, OsWD40-94 
33559	22395576	Dai X., Wang Y., Yang A., Zhang W.H.	OsMYB2P-1, a R2R3 MYB transcription factor, is involved in regulation of phosphate-starvation responses and root architecture in rice.	Plant Physiol.	159(1)	169-83	2012	PT8,PAP10,PT2,_,MIR399J,_,PT6,PT10,IPS1,SPX1,MIR399A	OsPT8, PHT1-8, OsPht1;8, Pht1;8, PHT1;8, OsPHT1;8,OsPAP10,OsPT2, PTH1-2, OsPht1;2, PHT1;2, OsPHT1;2,OsSQD,OsmiR399j, osa-miR399j, osa-MIR399j, Os-miR399j, miR399j,OsMYB2P-1,OsPT6, PHT1-6, OsPht1;6, OsLPT6:1, OsLPT1, OsPT6:1, Pht1;6, LPT6:1, LPT1, PT6:1,OsPT10, PHT1-10, OsPht1;10,OsIPS1,OsSPX1,OsmiR399a, osa-miR399a, osa-MIR399a, Os-miR399a, miR399a
33560	22383541	Tsai Y.C., Weir N.R., Hill K., Zhang W., Kim H.J., Shiu S.H., Schaller G.E., Kieber J.J.	Characterization of genes involved in cytokinin signaling and metabolism from rice.	Plant Physiol.	158(4)	1666-84	2012	RR21,HST1,DLC1,RR26,RR4,RR25,HD2,IPT9,PRR95,IPT8,EF1,CKX9,AHP1,CKX5,RR10,RR9,CKX4,CYP735A4,CKX1,IPT1,RR27,HK4,RR29,CRL4,RR31,RR5,AHP2,_,PHP1,RR33,_,_,_,_,RR11,LOGL2,LOGL4,RR23,LOGL7,IPT7,LOGL3,LOGL5,GN1A,RR8,LOGL1,PHP3,PHP2,_,CKT1,LOGL8,TOC1,RR1,RR13,LOGL9,IPT6,RR7,PRR73,RR6,RR12,_,HK5,IPT2,HK3,CKX7,IPT10,RR2,LABA1,CKX8,CKX6,CKX11,PRR59,IPT4,IPT5,LOG1,LOGL10,RR3,CKX10,IPT3,RR28,CKX3	OsRR21, Rrb1, Orr1, OsRR19, RR19, OsRRB1, ORR1,RR22, OsRR22, Rrb4, Orr2, OsRR20, OsRRB4, OsHST1,RR24, OsRR24, Rrb2, Orr4, OsRR17, RR17, OsRRB2, OsRR24/LEPTO1, OsLEPTO1, LEPTO1, OsDLC1,OsRR26, Rrb6, Orr6, OsRR16, RR16, OsRRB6,rr4, OsRR4, Rra3, OsRRA3,OsRR25, Rrb3, Orr5, OsORR5, OsRR21, OsRRB3,Hd2(t), Hd2, qHD2(t), OsPRR37, Os-PRR37, PRR37, Prr4, OsPRR4, DTH7, Os DTH7, OsCCT28, CCT28, Ghd7.1, PRR37/Hd2, EH7-2, EH7-2/Hd2, Hd2/PRR37, PRR37-1a, PRR37-1b, PRR37-1c, PRR37-2a, PRR37- 2, HD7.2,OsIPT9, OsIPT5, IPT5,OsPRR95, Os-PRR95, Prr2, OsPRR2, OsCCT33,OsIPT8,Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,OsCKX9,OHP1, HPt, OsAHP1, Hpt2, Ohp1, OsHP2, HP2, OsHpt2, OsHPt2, OsHP02,OsCKX5, ckx5,OsRR10, Rra2, OsRRA2, RR2,OsRR9, Rra1, OsRRA1, OsRR10, RR10,OsCKX4, ckx4, OsSCRM, OsSCRM2, SCRM, SCRM2,OsCYP735A4,OsCKX1,OsIPT1,OsRR27, Rra16, OsPRR5, OsRRA16,OHK4, HK, OsHK4, Crl1b, Ohk4,OsRR29, Rrb7, OsPRR4, OsRRB7,CHARK, S/T kinase, OsCRL4, OsHKL1, OsCDP,OsRR31,rr5, OsRR5, Rra4, OsRRA4,OHP2, HPt, OsAHP2 Hpt3, Ohp2, OsHP1, HP1, OsHpt3, OsHP01,OsRR32,OsPHP1, Hpt1, OsHP3, sHP3, OsHpt1,OsRR33, Rra19, OsRRA19,OsRR42, Rra15, OsRR13, OsRRA15,OsPRR10, Rra18, OsRRA18,OsPRR11,CYP735A3,OsRR11, Rra8, OsRRA8, RR8,LOGL2,LOGL4,OsRR23, Rrb5, Orr3, OsRR18, RR18, OsRRB5,LOGL7,OsIPT7,OsLOGL3,OsLOGL5,Gn1a, OsCKX2, CKX2, ckx2, Gn1a/OsCKX2, Os CKX2, CKX2/Gn1a,rr8, OsRR8, Rra13, OsRR15, RR15, OsRRA13,OsLOGL1,OsPHP3, Hpt5, OsHP4, HP4, OsHpt5, OsHpt5a, OsHpt5b, OsHpt5c,OsPHP2, Hpt4, OsHP5, HP5, OsHpt4, OsHP05,OsRR41, RR41, Rra14, OsRR14, RR14, OsRRA14, OsEnS-54,OHK5, HK, OsHK6, HK6, Crl1a, Ohk5, OsHK1, OsCKT1 ,LOGL8,OsTOC1, OsPRR1, Os-PRR1, PRR1, OsRRA21, OsCCT07,rr1, OsRR1, Rra9, OsRRA9,OsRR13, Rra12, OsRR12, OsRRA12, RR12,LOGL9,OsIPT6, OsIPT6.p,rr7, OsRR7, Rra5, OsRRA5,OsPRR73, Os-PRR73, Prr3, OsPRR3, OsRRA20, OsCCT11, CCT11,OsRR6, rr6, Rra6, OsRRA6,OsRR12, Rra11, OsRR8, RR8, OsRRA11,OsPRR12, Rra17, OsRRA17, OsEnS-61,OHK3, HK, OsHK5, Crl3, Ohk3, OsHK2,OsIPT2,OHK2, HK, OsHK3, Ohk, Crl2, Ohk2, OsHK3b, OsHK03,OsCKX7,OsIPT10,rr2, Osrr2, OsRR2, Rra10, OsRRA10,LOGL6, OsLOGL6, An-2,OsCKX8,OsCKX6,OsCKX11,OsPRR59, Os-PRR59, Prr5, OsPRR5, OsCCT38, CCT38,OsIPT4,OsIPT5,OsLOG1, LOG, Log, log, OsLOG,LOGL10,OSRR3, OsRR3, rr3, Rra7, OsRRA7,OsCKX10,OsIPT3,OsRR28, Rra22, OsPRR3, OsRRA22,OsCKX3, ckx3
33561	22451926	Hu Y., Liu D., Zhong X., Zhang C., Zhang Q., Zhou D.X.	CHD3 protein recognizes and regulates methylated histone H3 lysines 4 and 27 over a subset of targets in the rice genome.	Proc. Natl. Acad. Sci. U.S.A.	109(15)	5773-8	2012	RFS,DLN39,_,DLN32,PKL,CHR705	rfs, cul7, OsRFS, OsCHR729, CHR729, CHR4, OsCHR4, CRL6, OsCRL, OsCHR4/CHR729, PKR1, OsPHD32, PHD32,CHR744, OsCHR744, OsDLN39,CHR723, OsCHR723,CHR703, OsDLN32, OsCHR703,CHR702, chr702, OsCHR702,chr705, OsCHR705
33562	22437844	Kim S.H., Oikawa T., Kyozuka J., Wong H.L., Umemura K., Kishi-Kaboshi M., Takahashi A., Kawano Y., Kawasaki T., Shimamoto K.	The bHLH Rac Immunity1 (RAI1) Is Activated by OsRac1 via OsMAPK3 and OsMAPK6 in Rice Immunity.	Plant Cell Physiol.	53(4)	740-54	2012	CERK1,_,DSG1,_,RAI1,ICE2,WRKY19,SMG1,TDR,BHLH2,RAC1,PAL1,MSRMK2,BHLH6	OsCERK1, OsLysM-RLK9, Os-CERK1, Os-LysM-RLK9, OsLysMRLK9, OsCERK1/OsLYK9, OsLYK9, LYK9,OsbHLH004,OsMAPK6, MAPK6, OsMPK6, OsSIPK, SIPK, OsMAPK1, MAPK1, MPK1, OsMPK1, MPK6, OsDSG1,OsbHLH155,OsRAI1, OsbHLH003, bHLH003, bHLH3,OsbHLH001, bHLH001, OsbHLH1, bHLH1, OsICE2,OsWRKY19,OsMKK4, MKK4, OsMKK4/SMG1, OsMAPKK4, MAPKK4, OsMEK4, MEK4, OsSMG1, SMG1/OsMEK6, OsMEK6, MEK6, OsSTS, STS,tdr, OsbHLH005, bHLH005, OsbHLH5, bhlh5, TDR1, OsTDR, OsTDR1, OsMYC5, MYC5,OsbHLH002, bHLH002, OsbHLH2, bHLH2, OsICE1, ICE1, OsbHLH002/OsICE1,OsRAC1, OsRac1, Os Rac1, Rac1, Os-Rac1,OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6,OsMSRMK2, OsMAPK5, OsMAP1, OsMPK3, OsBIMK1, OsMAPK2, MPK5, BIMK1, MAPK2, MAPK5, MPK3, OsMPK5, OsMAPK3, OsMAPK5b, MAPK3,OsbHLH006, bHLH006, OsbHLH6, bHLH6, RERJ1, OsRERJ1, bHLH35
33563	22499210	Zhang C.J., Guo Y.	OsTRXh1 regulates the redox state of the apoplast and influences stress responses in rice.	Plant Signal Behav	7(3)	440-2	2012	TRXH	trxh, Trx-H, OsTRXh1, TRXh1, OsTrxh1, Os1, OsTrx23, Trx23, RPP13-1
33564	17284581	G Eric Schaller, Doi K., Hwang I., Joseph J Kieber, Jitendra P Khurana, Kurata N., Mizuno T., Pareek A., Shin-Han Shiu, Wu P., Wing Kin Yip	Nomenclature for two-component signaling elements of rice.	Plant Physiol.	143(2)	555-7	2007	EF1,RR25,RR21,HST1,HK1,RR27,AHP1,RR29,DLC1,RR31,RR26,_,RR33,_,_,_,RR23,HK2,HK5,ETR4,HK4,ERS2,PHP1,PHP3,PHP2,ETR3,CKT1,ERS1,ETR2,_,_,HK3,AHP2,RR28	Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,OsRR25, Rrb3, Orr5, OsORR5, OsRR21, OsRRB3,OsRR21, Rrb1, Orr1, OsRR19, RR19, OsRRB1, ORR1,RR22, OsRR22, Rrb4, Orr2, OsRR20, OsRRB4, OsHST1,OsHK1, OHK1, MHZ1/OsHK1, MHZ1, OsMHZ1,OsRR27, Rra16, OsPRR5, OsRRA16,OHP1, HPt, OsAHP1, Hpt2, Ohp1, OsHP2, HP2, OsHpt2, OsHPt2, OsHP02,OsRR29, Rrb7, OsPRR4, OsRRB7,RR24, OsRR24, Rrb2, Orr4, OsRR17, RR17, OsRRB2, OsRR24/LEPTO1, OsLEPTO1, LEPTO1, OsDLC1,OsRR31,OsRR26, Rrb6, Orr6, OsRR16, RR16, OsRRB6,OsRR32,OsRR33, Rra19, OsRRA19,OsRR42, Rra15, OsRR13, OsRRA15,OsPRR10, Rra18, OsRRA18,OsPRR11,OsRR23, Rrb5, Orr3, OsRR18, RR18, OsRRB5,OHK1, HK, OsHK2, Ohk1,OHK3, HK, OsHK5, Crl3, Ohk3, OsHK2,PK3, OsPK3, OsETR4, OS-ETR4,OHK4, HK, OsHK4, Crl1b, Ohk4,OS-ERS2, OsERS2, OsERS2a, OsERS2b, OsERS2c,OsPHP1, Hpt1, OsHP3, sHP3, OsHpt1,OsPHP3, Hpt5, OsHP4, HP4, OsHpt5, OsHpt5a, OsHpt5b, OsHpt5c,OsPHP2, Hpt4, OsHP5, HP5, OsHpt4, OsHP05,OsETR3, OsERS4, OS-ETR3, OsETR3a, OsETR3b, PK2, OsPK2, OsETR2;1, ETR2;1,OHK5, HK, OsHK6, HK6, Crl1a, Ohk5, OsHK1, OsCKT1 ,OS-ERS1, OsERS1, OsERS1a, OsERS1b, OSERS,etr2, OsPK1, PK1, ERL1, OsETR2, OsERL1, OS-ETR2, OsERS3,OsRR41, RR41, Rra14, OsRR14, RR14, OsRRA14, OsEnS-54,OsPRR12, Rra17, OsRRA17, OsEnS-61,OHK2, HK, OsHK3, Ohk, Crl2, Ohk2, OsHK3b, OsHK03,OHP2, HPt, OsAHP2 Hpt3, Ohp2, OsHP1, HP1, OsHpt3, OsHP01,OsRR28, Rra22, OsPRR3, OsRRA22
33565	21757254	Li W., Han Y., Tao F., Chong K.	Knockdown of SAMS genes encoding S-adenosyl-l-methionine synthetases causes methylation alterations of DNAs and histones and leads to late flowering in rice.	J. Plant Physiol.	168(15)	1837-43	2011	RFT1,HD3A,_,SAMS2,SAMS1	FT-L 3, OsFTL3, FTL3, FT-L3, RFT, OsRFT1,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,OsSAMS3, OsSAMS1, SAMS3, SAMS1, SAM2, SAM1,OsSAM2, SAM2, OsSAMS2, OS-SAMS2,OsSAMS1, OS-SAMS1, OsSAMS, SAM, SAMS
33566	21828106	Takeuchi K., Gyohda A., Tominaga M., Kawakatsu M., Hatakeyama A., Ishii N., Shimaya K., Nishimura T., Riemann M., Nick P., Hashimoto M., Komano T., Endo A., Okamoto T., Jikumaru Y., Kamiya Y., Terakawa T., Koshiba T.	RSOsPR10 expression in response to environmental stresses is regulated antagonistically by jasmonate/ethylene and salicylic acid signaling pathways in rice roots.	Plant Cell Physiol.	52(9)	1686-96	2011	ERF93,RSOSPR10	OsERF1, ERF1, OsERF#093, OsERF093, OsERF93, AP2/EREBP#168, AP2/EREBP168,RSOsPR10, RsOsPR10a, OsPR10a, OsPR10alpha, OsPR10, PR10, OsBETV1, BETV1
33567	21823826	Xu Z., Rafi S., Ramakrishna W.	Polymorphisms and evolutionary history of retrotransposon insertions in rice promoters.	Genome	54(8)	629-38	2011		
33568	21757998	Isayenkov S., Isner J.C., Maathuis F.J.	Membrane localisation diversity of TPK channels and their physiological role.	Plant Signal Behav	6(8)	1201-4	2011	TPKC,TPKB,TPKA	TPKc, OsTPKc,TPKb, OsTPKb,TPKa, OsTPKa, OsTpka, TPK1a, OsTPK1a
33569	21854687	Wang Q., Qi W., Wang Y., Sun F., Qian X., Luo X., Yang J.	Isolation and identification of an AP2/ERF factor that binds an allelic cis-element of rice gene LRK6.	Genet Res (Camb)	93(5)	319-32	2011	LRK6,PDCD5,ERF3	OsLRK6, OsPSKR4, PSKR4,OsPDCD5,AP37, OsAP37, OsERF3, OsERF#075, OsERF075, OsERF75, ERF75, AP2/EREBP#004, AP2/EREBP4, OsBIERF2, BIERF2, DLN23, OsDLN23
33570	0	L. HOU X., WU P., C. JIAO F., J. JIA Q., M. CHEN H., YU J., W. SONG X., K. YI K.	Regulation of the expression of OsIPS1 and OsIPS2 in rice via systemic and local Pi signalling and hormones	Plant, Cell and Environment	28	353-364	2005	IPS1,PI1,PI1	OsIPS1,Pi1, Pi-1, Pi1-5C, Pi1-6C,OsIPS2, IPS2, OsPI1
33571	0	Wasaki J., Yonetani R., Shinano T., Kai M., Osaki M.	Expression of the OsPI1 gene, cloned from rice roots using cDNA microarray, rapidly responds to phosphorus status	New Phytologist	158	239-248	2003	PI1,PI1	OsIPS2, IPS2, OsPI1,Pi1, Pi-1, Pi1-5C, Pi1-6C
33572	0	Chaudhuri,R.K., Datta,A. and Mitra,A.	Rice (Oryza sative ssp. indica) MboI restriction DNA-fragment has nuclear binding capacity	Gene					
33575	0	Huang,H.J.		Thesis  Department of Biology, National Cheng-Kung University, Tainan, Taiwan			2001		
33576	0	Malz,S.		Thesis  Department of General Botany, University of Hamburg, Hamburg, GERMANY			1998		
33577	0	Qu,L.J., Zhang,Y., Liu,M., Gu,H. and Chen,Z.	Characterization and regulation of a rice MADS-box gene	Chin. Sci. Bull.					
33578	0	Shi,J., Cao,Y., Fan,X., Li,M., Wang,Y. and Ming,F.	A rice microsomal delta-12 fatty acid desaturase can enhance resistance to cold stress in yeast and Oryza sativa	Mol. Breed.	29(3)	743-757	2012	FAD2-1	OsFAD2, OsFAD2-1, OsaFAD2-1
33581	0	Zhang,X.		Thesis  National Center for Gene Research			1999		
33582	18315545	Duan K., Yi K., Dang L., Huang H., Wu W., WU P.	Characterization of a sub-family of Arabidopsis genes with the SPX domain reveals their diverse functions in plant tolerance to phosphorus starvation.	Plant J.	54(6)	965-75	2008	SPX1	OsSPX1
33583	19420327	Chien-Yu Huang, Chun-I Chung, Yao-Cheng Lin, Yue-Ie Caroline Hsing, Anthony H C Huang	Oil bodies and oleosins in Physcomitrella possess characteristics representative of early trends in evolution.	Plant Physiol.	150(3)	1192-203	2009	OLE4,OLE1,OLE2,OLE3,OLE5,OLE6	OsOLE4, Os-OLE4,OsOLE1, Os-OLE1,OsOLE2, Os-OLE2,OsOLE3, Os-OLE3,OsOLE5, Os-OLE5,OsOLE6, Os-OLE6
33584	0	Nakanishi H., Ogawa I., Ishimaru Y., Mori S., Nishizawa N.	Iron deficiency enhances cadmium uptake and translocation mediated by the Fe^<2+> transporters OsIRT1 and OsIRT2 in rice	Soil Sci. Plant Nutr.	52(4)	464 469	2006	IRT1,ZIP1,IRT2	OsIRT1, ZIP10, OsZIP10, OsZIP12, ZIP12,OsZIP1,OsIRT2, OsIRT1, OsZIP15, ZIP15
33585	22106097	Aihong L., Wang Y., Tang J., Xue P., Li C., Liu L., Hu B., Yang F., Loake G.J., Chu C.	Nitric Oxide and protein S-nitrosylation Are Integral to Hydrogen Peroxide Induced Leaf Cell Death in Rice.	Plant Physiol.	158(1)	451-64	2012	_,_,NOE1,GSNOR1	OsNIA1, OsNia1, NIA1, Nia1, OsNR, NR, OsNR2, NR2, NIA2,OsNIA2,CATC, OsCat, OsCatC, OsCATC, OsNOE1, noe1, catC, OsCATC, CAT3, OsCAT3, LLM9428, OsLLM9428,OsGSNOR, GSNOR, OsGSNOR1
33586	22057934	Godbole A., Mitra R., Dubey A.K., Reddy P.S., Mathew M.K.	Bacterial expression, purification and characterization of a rice voltage-dependent, anion-selective channel isoform, OsVDAC4.	J. Membr. Biol.	244(2)	67-80	2011	_	OsVDAC4, OsVDAC5, VDAC5
33587	22067990	Ning Y., Xie Q., Wang G.L.	OsDIS1-mediated stress response pathway in rice.	Plant Signal Behav	6(11)	1684-6.	2011	DIS1,_,SKIPA	OsDIS1, RIP5, OsRIP5,  OsRING80, RING80,OsNek6,OsSKIPa, OsSKIP, SKIP
33588	22120082	Wang F.J., Zhu C.	[Heterologous expression of a rice syntaxin-related protein KNOLLE gene (OsKNOLLE) in yeast and its functional analysis in the role of abiotic stress].	Yi Chuan	33(11)	1251-7	2011	KN	OsKN, OsSYP111, SYP111
33589	17886359	Fr??d??ric Vigneault, Lachance D., Cloutier M., Pelletier G., Levasseur C., Armand S??guin	Members of the plant NIMA-related kinases are involved in organ development and vascularization in poplar, Arabidopsis and rice.	Plant J.	51(4)	575-88	2007	_,_,_,_,_,_	OsNek3, OsSTA192,OsNek6,OsNek1,OsNek2,OsNek4,OsNek5
33590	14675437	Vannini C., Locatelli F., Bracale M., Magnani E., Marsoni M., Osnato M., Mattana M., Baldoni E., Coraggio I.	Overexpression of the rice Osmyb4 gene increases chilling and freezing tolerance of Arabidopsis thaliana plants.	Plant J.	37(1)	115-27	2004	_	OsMYB4, Osmyb4, OsMyb4, MYB4, OsMYB55, MYB55, OsMyb8, MYB8, OsMYB13b, MYB13b, OsMYB15, MYB15, Os2R_MYB46, 2R_MYB46
33591	19017109	Iordachescu M., Imai R.	Trehalose biosynthesis in response to abiotic stresses.	J Integr Plant Biol	50(10)	1223-9	2008	TPP2,TPP1	OsTPP2,OsTPP1, OsTPS, TPP
33592	7766875	A Yano, M Umeda, H Uchimiya	Expression of functional proteins of cDNA encoding rice nucleoside diphosphate kinase (NDK) in Escherichia coli and organ-related alteration of NDK activities during rice seed germination (Oryza sativa L.).	Plant Mol. Biol.	27(5)	1053-8	1995	NDPK1	OsNDPK1, NDK, rNDK, NDK1, NDKR, NDK-1
33593	15890279	Jen-Yen Huang, Chang T., Chia-Yu Chang, Chun-Jung Chen	Crystal structure of Nucleoside diphosphate kinase required for coleoptile elongation in rice (Oryza sativa L.).	J. Struct. Biol.	150(3)	309-18	2005	NDPK1	OsNDPK1, NDK, rNDK, NDK1, NDKR, NDK-1
33594	10677437	L Pan, M Kawai, A Yano, H Uchimiya	Nucleoside diphosphate kinase required for coleoptile elongation in rice.	Plant Physiol.	122(2)	447-52	2000	NDPK1	OsNDPK1, NDK, rNDK, NDK1, NDKR, NDK-1
33595	0	Li X.H., Lu Q., Wang F., Xu C.G., Zhang Q.	Separation of the two-locus inheritance of photoperiod sensitive genic male sterility in rice and precise mapping the pms3 locus.	Euphytica	119(3)	343-348	2001		
33596	18923393	Bowler,C., Allen,A.E., Badger,J.H., Grimwood,J., Jabbari,K., Kuo,A., Maheswari,U., Martens,C., Maumus,F., Otillar,R.P., Rayko,E., Salamov,A., Vandepoele,K., Beszteri,B., Gruber,A., Heijde,M., Katinka,M., Mock,T., Valentin,K., Verret,F., Berges,J.A., Brownlee,C., Cadoret,J.P., Chiovitti,A., Choi,C.J., Coesel,S., De Martino,A., Detter,J.C., Durkin,C., Falciatore,A., Fournet,J., Haruta,M., Huysman,M.J., Jenkins,B.D., Jiroutova,K., Jorgensen,R.E., Joubert,Y., Kaplan,A., Kroger,N., Kroth,P.G., La Roche,J., Lindquist,E., Lommer,M., Martin-Jezequel,V., Lopez,P.J., Lucas,S., Mangogna,M., McGinnis,K., Medlin,L.K., Montsant,A., Oudot-Le Secq,M.P., Napoli,C., Obornik,M., Parker,M.S., Petit,J.L., Porcel,B.M., Poulsen,N., Robison,M., Rychlewski,L., Rynearson,T.A., Schmutz,J., Shapiro,H., Siaut,M., Stanley,M., Sussman,M.R., Taylor,A.R., Vardi,A., von Dassow,P., Vyverman,W., Willis,A., Wyrwicz,L.S., Rokhsar,D.S., Weissenbach,J., Armbrust,E.V., Green,B.R., Van de Peer,Y. and Grigoriev,I.V.	The Phaeodactylum genome reveals the evolutionary history of diatom genomes	Nature	456(7219)	239-244	2008		
33597	0	Chaudhuri,R.K., Mitra,A., Prasad,M. and Chaudhuri,I.	Possible existence of transposon footprints in a rice genomic DNA	Nucleus (Calcutta)	39	24-28	1996		
33598	12172016	Cheng,Z., Dong,F., Langdon,T., Ouyang,S., Buell,C.R., Gu,M., Blattner,F.R. and Jiang,J.	Functional rice centromeres are marked by a satellite repeat and a centromere-specific retrotransposon	Plant Cell	14(8)	1691-1704	2002	_	CRR
33599	0	Chen,X., Temnykh,S., Xu,Y., Cho,Y.G. and McCouch,S.R.	Development of a microsatellite framework map providing genome-wide coverage in rice (Oryza sativa L.)	Theor. Appl. Genet.	95	553-567	1997		
33601	1844878	Claes,B., Smalle,J., Dekeyser,R., Van Montagu,M. and Caplan,A.	Organ-dependent regulation of a plant promoter isolated from rice by 'promoter-trapping' in tobacco	Plant J.	1(1)	15-26	1991		
33602	8315657	Cordesse,F., Cooke,R., Tremousaygue,D., Grellet,F. and Delseny,M.	Fine structure and evolution of the rDNA intergenic spacer in rice and other cereals	J. Mol. Evol.	36(4)	369-379	1993		
33603	11710957	Davierwala,A.P., Ramakrishna,W., Chowdari,V., Ranjekar,P.K. and Gupta,V.S.	Potential of (GATA)n microsatellites from rice for inter- and intra-specific variability studies	BMC Evol. Biol.	1	7	2001		
33605	22158700	Deng,H., Liu,H., Li,X., Xiao,J. and Wang,S.	A CCCH-Type Zinc Finger Nucleic Acid-Binding Protein Quantitatively Confers Resistance against Rice Bacterial Blight Disease	Plant Physiol.	158(2)	876-889	2012	C3H12	OsC3H12, OsZFP12, ZFP12
33606	9653153	Dong,F., Miller,J.T., Jackson,S.A., Wang,G.L., Ronald,P.C. and Jiang,J.	Rice (Oryza sativa) centromeric regions consist of complex DNA	Proc. Natl. Acad. Sci. U.S.A.	95(14)	8135-8140	1998		
33607	1782676	Fukuchi,M., Shikanai,T., Kossykh,V.G. and Yamada,Y.	Analysis of nuclear sequences homologous to the B4 plasmid-like DNA of rice mitochondria; evidence for sequence transfer from mitochondria to nuclei	Curr. Genet.	20(6)	487-494	1991		
33608	7719922	Fukuoka,S., Inoue,T., Miyao,A., Monna,L., Zhong,H.S., Sasaki,T. and Minobe,Y.	Mapping of sequence-tagged sites in rice by single strand conformation polymorphism	DNA Res.	1(6)	271-277	1994		
33609	18754079	Gutha,L.R. and Reddy,A.R.	Rice DREB1B promoter shows distinct stress-specific responses, and the overexpression of cDNA in tobacco confers improved abiotic and biotic stress tolerance	Plant Mol. Biol.	68(6)	533-555	2008	DREB1B	OsDREB1B, ERF31, OsERF031, OsERF#031, OsERF31, AP2/EREBP#169, AP2/EREBP169, OsDREB1b, OsDREB1C, OsCBF1, CBF1
33610	0	Heang,D. and Sassa,H.	Antagonistic Actions of HLH/bHLH Proteins Are Involved in Grain Length and Weight in Rice	PLoS ONE 7, e31325  REMARK Publication Status: Online-Only	7(2)	e31325	2012		
33611	22014207	Huang,C.F., Yamaji,N., Ono,K. and Ma,J.F.	A leucine-rich repeat receptor-like kinase gene is involved in the specification of outer cell layers in rice roots	Plant J.	69(4)	565-576	2012	DOCS1,EXPA12,OUL1,ROC4	OsSERL4, OsBAK1-9, Docs1, OsDOCS1,OsEXPA12, OsEXP12, osaEXPa1.15,ROC5, Roc5(t), Roc5, GL2-5, OsROC5, CLF1, OsCLF1, OsOUL1, OsHDZ7, OsHDZIP7, HDZ7, HDZIP7,Roc4(t), Roc4, GL2-4, OsROC4, OsGL2-4, OsHDZ16, OsHDZIP16, HDZ16, HDZIP16
33612	0	Hung,T. and Chen,S.	Two telomere-associated sequences from rice (Oryza sativa L.)	Theor. Appli. Gen.			1995		
33613	10589837	Iwamoto,M., Nagashima,H., Nagamine,T., Higo,H. and Higo,K.	A tourist element in the 5'-flanking region of the catalase gene CatA reveals evolutionary relationships among Oryza species with various genome types	Mol. Gen. Genet.	262(3)	493-500	1999	_,CATA	Tourist-OsaCatA,CATA1, Cat A1*, OSCAT-A, Cat2, CatA1, CAT-A, OsCatA, OsCAT, CAT, catA, OSCATA, OsCATc, OsCATA, OsCAT1A, CAT1, OsCAT1, OsCATC, OsCAT2
33615	12234680	Jiang,G., Chen,X., Li,W., Jin,Y. and Wang,D.	Identification and characterization of a novel U14 small nucleolar RNA gene cluster in Oryza sativa	Gene	294(1-2)	187	2002	_,_	U14.1,U14.2
33616	2263449	Kim,S.Y. and Wu,R.	Multiple protein factors bind to a rice glutelin promoter region	Nucleic Acids Res.	18(23)	6845-6852	1990	_,GLUA1	,Glua1*, Glua1, GLUA-1, GluA-1, GluA1, Glu19, OsEnS-16
33617	0	Kumar,S.P., Dalal,V., Singh,N.K. and Sharma,T.R.	Cloning and in silico Mapping of Resistance Gene Analogues Isolated from Rice Lines Containing Known Genes for Blast Resistance	J. Phytopathol.	155(5)	273-280	2007		
33618	17522955	Liu,X., Lu,T., Yu,S., Li,Y., Huang,Y., Huang,T., Zhang,L., Zhu,J., Zhao,Q., Fan,D., Mu,J., Shangguan,Y., Feng,Q., Guan,J., Ying,K., Zhang,Y., Lin,Z., Sun,Z., Qian,Q., Lu,Y. and Han,B.	A collection of 10,096 indica rice full-length cDNAs reveals highly expressed sequence divergence between Oryza sativa indica and japonica subspecies	Plant Mol. Biol.	65(4)	403-415	2007		
33619	22422941	Luo,S., Zhang,Y., Hu,Q., Chen,J., Li,K., Lu,C., Liu,H., Wang,W. and Kuang,H.	Dynamic Nucleotide-Binding-Site and Leucine-Rich-Repeat- encoding Genes in the Grass Family	Plant Physiol.	159(1)	197-210	2012	PI5-2,PI3,PITA,PIKM,PIKP,PI36,PIA,PI37,PIT,PID3,PIK,PI9,PIZT,PIZ,PIB	Pi3, Pi5, Pi-3(t), Pi-3, Pi3(t), Pi5(t), Pi5-2, Pii,  RMg22, RMg21,Pi3, Pi5, Pi-3(t), Pi-3, Pi3(t), Pi5(t), Pi5-1, Pii,  RMg22, RMg21,Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30, Trx30,Pik-m, Pi-m, Pi-km, Pikm, Pi m, Pikm1-TS, Pikm2-TS, Pi-km1, Pi-km2,Pik-p, Pi-kp, Pikp, Pikp-1, Pikp-2,Pi36(t), Pi36,Pi a, Pia, Pi-a, Pia-1, Pia-2,Pi37(t), Pi37,Pit, Pit(K59), Pit(Npb), Pi-t, PitNpb, PitK59, Pit1, OsPit1,Pi-d3, Pid3, Pi25, Pid3-I1, qBRM6.2,Pik, RMg8, Pi-k, Pik-2, Pik-1, Pik1, Pik2, Pik-H4, Pikp-1, Pikh-1, Pik1-H4, Pikh-2, Pik2-H4,Pi9(t), Pi9(t)*, Pi9, Pi-9(t),Piz-t, Pi-zt, Pi-z(t), Pi2/Pizt, Pizt, Pi9, OsPiz-t,Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2,Pi b(Pi s), Pis, Pib, Pi-s, Pi-hy
33620	7902724	Mao,L. and Zhu,L.	Molecular study on null allolic RFLPs among rice varieties	I Chuan Hsueh Pao	20(4)	324-333	1993		
33621	20964753	Mather,K.A., Molina,J., Flowers,J.M., Rubinstein,S., Rauh,B.L., Lawton-Rauh,A., Caicedo,A.L., McNally,K.L. and Purugganan,M.D.	Migration, isolation and hybridization in island crop populations: the case of Madagascar rice	Mol. Ecol.	19(22)	4892-4905	2010		
33622	7774793	Mawal,Y., Lagu,M., Moon,E., Chang,S., Chung,M.C., Wu,H.K., Gupta,V., Ranjekar,P. and Wu,R.	BamHI and HindIII repetitive DNA families in the rice genome	Genome	38(2)	191-200	1995		
33623	0	McIntyre,C.L., Winberg,B., Houchins,K., Appels,R. and Baum,B.R.	Relationships between Oryza species based on 5S DNA sequences	Plant Syst. Evol.  In press REMARK (sites)	183	249-264	1992	R5S1	R5s1*, r5s, R5s1
33624	9832537	Miller,J.T., Dong,F., Jackson,S.A., Song,J. and Jiang,J.	Retrotransposon-related DNA sequences in the centromeres of grass chromosomes	Genetics	150(4)	1615-1623	1998		
33625	10380800	Moriyama,H., Horiuchi,H., Nitta,T. and Fukuhara,T.	Unusual inheritance of evolutionarily-related double-stranded RNAs in interspecific hybrid between rice plants Oryza sativa and Oryza rufipogon	Plant Mol. Biol.	39(6)	1127-1136	1999		
33626	10071204	Nonomura,K.I. and Kurata,N.	Organization of the 1.9-kb repeat unit RCE1 in the centromeric region of rice chromosomes	Mol. Gen. Genet.	261(1)	1-10	1999		
33627	0	Ogasawara,H. and Takahashi,S.	Identification of 'Menkoina' from Important Rice Cultivars in Akita Prefecture by STS-PCR Method	Bulletin of the Akita Reseach Insutitute of Food and Brewing	5	48-54	2003		
33628	8914521	Panaud,O., Chen,X. and McCouch,S.R.	Development of microsatellite markers and characterization of simple sequence length polymorphism (SSLP) in rice (Oryza sativa L.)	Mol. Gen. Genet.	252(5)	597-607	1996		
33629	12845436	Park,K.C., Kim,N.H., Cho,Y.S., Kang,K.H., Lee,J.K. and Kim,N.S.	Genetic variations of AA genome Oryza species measured by MITE-AFLP	Theor. Appl. Genet.	107(2)	203-209	2003		
33630	12893965	Park,K.C., Lee,J.K., Kim,N.H., Shin,Y.B., Lee,J.H. and Kim,N.S.	Genetic variation in Oryza species detected by MITE-AFLP	Genes Genet. Syst.	78(3)	235-243	2003	PANGRANGIA	Pangrangia
33631	8682306	Qu,F., Zhai,W., Chen,H., Zhu,L.H. and Morris,T.J.	Cloning, characterization and transient expression of the gene encoding a rice U3 small nuclear RNA	Gene	172(2)	217-220	1996	_	U3
33632	19903220	Qu,S., Jeon,J.S., Ouwerkerk,P.B., Bellizzi,M., Leach,J., Ronald,P. and Wang,G.L.	Construction and application of efficient Ac-Ds transposon tagging vectors in rice	J Integr Plant Biol	51(11)	982-992	2009		
33633	12454082	Ramakrishna,W., Dubcovsky,J., Park,Y.J., Busso,C., Emberton,J., SanMiguel,P. and Bennetzen,J.L.	Different types and rates of genome evolution detected by comparative sequence analysis of orthologous segments from four cereal genomes	Genetics	162(3)	1389-1400	2002		
33634	20550656	Reagon,M., Thurber,C.S., Gross,B.L., Olsen,K.M., Jia,Y. and Caicedo,A.L.	Genomic patterns of nucleotide diversity in divergent populations of U.S. weedy rice	BMC Evol. Biol.	10	180	2010		
33636	0	Shashikanth,M., Snehalatharani,A., Mubarak begum,S. and Ulaganathan,K.	Genome-wide computational analysis of snRNA genes of Oryza sativa (indica and japonica)	(in) ADVANCES IN BIOINFORMATICS AND COMPUTATIONAL BIOLOGY: 277-286; Imperial College Press, 57 Shelton Street, Covent Garden, London, UK 			2006	_,_,_	,,
33638	3401945	Shikanai,T. and Yamada,Y.	Properties of the circular plasmid-like DNA, B4, from mitochondria of cytoplasmic male-sterile rice	Curr. Genet.	13(5)	441-443	1988		
33639	9669326	Song,W.Y., Pi,L.Y., Bureau,T.E. and Ronald,P.C.	Identification and characterization of 14 transposon-like elements in the noncoding regions of members of the Xa21 family of disease resistance genes in rice	Mol. Gen. Genet.	258(5)	449-456	1998	XA21	Xa21*, Xa21, OsXA21
33640	0	Su,C., Xie,J., Wang,X. and Peng,Y.	Integrated structure and event-specific real-time detection of transgenic cry1Ac/SCK rice Kefeng 6	Eur. Food Res. Technol.	232(2)	351-359	2011		
33641	22430843	Su,N., Hu,M.L., Wu,D.X., Wu,F.Q., Fei,G.L., Lan,Y., Chen,X.L., Shu,X.L., Zhang,X., Guo,X.P., Cheng,Z.J., Lei,C.L., Qi,C.K., Jiang,L., Wang,H. and Wan,J.M.	Disruption of a rice PPR protein causes a seedling-specific albino phenotype and its utilization to enhance seed purity in hybrid rice production	Plant Physiol.	159(1)	227-38	2012	_	YSA
33642	9681012	Suoniemi,A., Tanskanen,J. and Schulman,A.H.	Gypsy-like retrotransposons are widespread in the plant kingdom	Plant J.	13(5)	699-705	1998	_	r-Os1
33643	11483586	Temnykh,S., DeClerck,G., Lukashova,A., Lipovich,L., Cartinhour,S. and McCouch,S.	Computational and experimental analysis of microsatellites in rice (Oryza sativa L.): frequency, length variation, transposon associations, and genetic marker potential	Genome Res.	11(8)	1441-1452	2001		
33644	0	Temnykh,S., Park,W.D., Ayres,N., Cartinhour,S., Hauck,N., Lipovich,L., Cho,Y.G., Ishii,T. and McCouch,S.R.	Mapping and genome organization of microsatellite sequences in rice (Oryza sativa L.)	Theor. Appl. Genet.	100	697-712	2000		
33645	7665075	Tseng,T.C., Tsai,T.H., Lue,M.Y. and Lee,H.T.	Identification of sucrose-regulated genes in cultured rice cells using mRNA differential display	Gene	161(2)	179-182	1995	_,_,_,_,_,SALT	SI1,SR3,SI2,SR1,SR4,salT*(sal1), SalT1*, sal1, Sal1, SALT, ML, SalT, OsSalT, OsJRL, JRL, Osl43, OsL43, OsMBL1, MBL1, OsJRL01, JRL01, OsJRL1, JRL1
33647	0	Wang,R.R.C., Li,X. and Chatterton,N.J.	Loss of heterozygosity and accelerated genotype fixation in rice hybrids	Genome	42	789-796	1999		
33648	0	Wang,R.R.C., Li,X., Larson,S.R. and Chatterton,N.J.	Mapping of Eight RAPD Markers Affected by Loss of Heterozygosity in Rice	Rice Biotechnol. Q.	40	16-17	1999		
33649	0	Wang,S., Liu,K. and Zhang,Q.	Segmental duplications are common in rice genome	Acta Bot. Sin.	42(11)	1150-1155	2000		
33650	10732686	Wang,S., Wang,J., Jiang,J. and Zhang,Q.	Mapping of centromeric regions on the molecular linkage map of rice (Oryza sativa L.) using centromere-associated sequences	Mol. Gen. Genet.	263(1)	165-172	2000		
33651	0	Wang,W.X., Zhu,T.H., Lai,F.X. and Fu,Q.	Event-specific qualitative and quantitative detection of transgenic rice Kefeng-6 by characterization of the transgene flanking sequence	Eur. Food Res. Technol.	232	297-305	2011		
33652	16769698	Wang,X., Zhao,X., Zhu,J. and Wu,W.	Genome-wide investigation of intron length polymorphisms and their potential as molecular markers in rice (Oryza sativa L.)	DNA Res.	12(6)	417-427	2005		
33653	0	Williams,M.N.V., Pande,N., Nair,S., Mohan,M. and Bennett,J.	Restriction fragment length polymorphism analysis of polymerase chain reaction products amplified from mapped loci of rice (Oryza sativa L.) genomic DNA	Theor Appl Genet 82 (4), 489-498  REMARK DOI: 10.1007/BF00588604			1991		
33654	0	Wu,T. and Wu,R.	A novel repetitive DNA sequence in the genus Oryza	Theor. Appl. Genet.	84	136-144	1992		
33655	0	Wu,T. and Wu,R.	Isolation and characterization of a telomere like sequence in rice	Rice Genetics Newsletter	10	125-129	1993		
33656	3627973	Wu,T.Y. and Wu,R.	A new rice repetitive DNA shows sequence homology to both 5S RNA and tRNA	Nucleic Acids Res.	15(15)	5913-5923	1987		
33657	0	Xiang,T., Yang,J., Yang,Q., Zhu,Q., Li,L., Ni,D., Wang,X. and Huang,D.	Molecular biological effect of 60Co gamma-ray irradiation on rice genome DNA	Shengwu Huaxue Yu Shengwu Wuli Jinzhan	29	754-759	2002		
33658	20423466	Yamamoto,T., Nagasaki,H., Yonemaru,J., Ebana,K., Nakajima,M., Shibaya,T. and Yano,M.	Fine definition of the pedigree haplotypes of closely related rice cultivars by means of genome-wide discovery of single-nucleotide polymorphisms	BMC Genomics	11	267	2010		
33659	20829346	Yu,G., Olsen,K.M. and Schaal,B.A.	Molecular Evolution of the Endosperm Starch Synthesis Pathway Genes in Rice (Oryza sativa L.) and Its Wild Ancestor, O. rufipogon L	Mol. Biol. Evol.	28(1)	659-671	2011	ALK,AGPS2,PHS8,WX1,AGPL2,SBE3	alk, SSII-3, OsSSIIa, OsSSII-3, SSIIa, SSS2A, OsSSIIaChr6, SS2a,OsAGPS2a, AGPS2A, AGPS2B, OsAGPS2, osagps2, APS2, APS2a, APS2b, AGPS2a, APGS2b, OsAGPS2b, AGPP, GAS8, OsAPS2, OsAPS2a, OsAPS2b,ISA1, OsISA1, ISA, OsISA, PHS8/ISA1, OsPHS8, ISA I, OsISA I, ISAI, OsISAI,wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx,OsAGPL2, osagpl2, APL2, OsAPL2, AGPiso, sh2, Sh2, GIF2, GAS1 ,SBEIII*, SBEIII, Sbe3, RBE3, QEIIa, QEIIA, BEIIb, BEIIB, SBEIIb, OsBEIIb, sbe3, SBE III, OsSBEIIb, SBEIIb
33660	1339378	Yu,S.M., Tzou,W.S., Lo,W.S., Kuo,Y.H., Lee,H.T. and Wu,R.	Regulation of alpha-amylase-encoding gene expression in germinating seeds and cultured cells of rice	Gene	122(2)	247-253	1992	AMY1A,AMY3C,AMY1C,AMY3B,AMY3E	Amy1A/C*(RAmy1A/C), alpha Amy7, AMY1.1, Amy1A, RAmy1A/C, Amy1A/C*, Amy1, Amy1A_C, OsAmy1A, alphaAmy7-C, RAmy1A, AmyI-1, OsAmyI-1, OsRamy1A,Amy3A/B/C*(RAmy3A/B/C), AmyII-6, AMY1.7, Amy3C, RAmy3A/B/C, Amy3A/B/C*, Amy7, AMY3B, RAmy3C, OsAmy3B,Amy1A/C*(RAmy1A/C), alpha Amy10, Amy1C, RAmy1A/C, Amy1A/C*, Amy3, RAmy1C, OsAmy1C, alphaAmy10-C,Amy3A/B/C*(RAmy3A/B/C), alpha Amy6, AmyII-5, AMY1.6, Amy1.6, Amy3B, BRAmy3A/B/C, Amy3A/B/C*, Amy6, RAmy3B, alphaAmy6-C, OsRamy3B, OsAmy3C,Amy3D/E*(RAmy3D/E), alpha Amy8, alphaAmy8, AmyII-3, AMY1.4, Amy3E, Amy3D/E*, RAmy3D/E, Amy9, RAmy3E, alphaAmy8-C, AMY3E/AMY1.4, OsAmy3E, OsRamy3E
33661	0	Zhou,M.-B., Lu,J.-J., Zhong,H., Liu,X.-M. and Tang,D.-Q.	Distribution and diversity of PIF-like transposable elements in the Bambusoideae subfamily	Plant Sci.	179(3)	257-266	2010		
33662	14503923	Zhu,Q.H., Hoque,M.S., Dennis,E.S. and Upadhyaya,N.M.	Ds tagging of BRANCHED FLORETLESS 1 (BFL1) that mediates the transition from spikelet to floret meristem in rice (Oryza sativa L)	BMC Plant Biol.	3	6	2003	FZP,_	fzp*, fzp, OsBD1, BD1, OsERF#078, OsERF078, OsERF78, ERF78, AP2/EREBP#133, AP2/EREBP133, BFL1, SGDP7, OsSGDP7,BFL1
33663	18438436	Zhu,X.Y., Cai,D.T. and Ding,Y.	Molecular and cytological characterization of 5S rDNA in Oryza species: genomic organization and phylogenetic implications	Genome	51(5)	332-340	2008	R5S1	R5s1*, r5s, R5s1
33664	0	HE Wen-ai, HUANG Da-hui, LI Rong-ba	Identification of a Resistance Gene bls1 to Bacterial Leaf Streak in Wild Rice Oryza rufipogon Griff.	Journal of Integrative Agriculture	11	962-969	2012	BLS1	bls1
33665	21084222	Horie T., Sugawara M., Okada T., Taira K., Kaothien-Nakayama P., Katsuhara M., Shinmyo A., Nakayama H.	Rice sodium-insensitive potassium transporter, OsHAK5, confers increased salt tolerance in tobacco BY2 cells.	J. Biosci. Bioeng.	111(3)	346-56	2011	HAK17,HAK6,HAK8,HAK9,HAK13,HAK14,HAK15,HAK12,HAK4,HAK3,HAK10,HAK11,LCS,HAK2,HAK16,HAK7,HAK5	OsHAK17, FCO3, FCO4,OsHAK6, OsSTA42,OsHAK8,OsHAK9,OsHAK13,OsHAK14,OsHAK15,OsHAK12,OsHAK4,OsHAK3,OsHAK10,OsHAK11,OsHAK1, HAK1,OsHAK2,OsHAK16,OsHAK7,OsHAK5, FCO13, OsFCO13
33666	22399582	Matsubara K., Ogiso-Tanaka E., Hori K., Ebana K., Ando T., Yano M.	Natural Variation in Hd17, a Homolog of Arabidopsis ELF3 That is Involved in Rice Photoperiodic Flowering.	Plant Cell Physiol.	53(4)	709-16	2012	HD3B	Hd17, EF7, Ef7, OsELF3-1, ELF3-1, OsELF3, ELF3, ELF3_chr.6, OsELF3.1, ELF3.1, OsELF3a, ELF3a
33667	22422935	Saito H., Ogiso-Tanaka E., Okumoto Y., Yoshitake Y., Izumi H., Yokoo T., Matsubara K., Hori K., Yano M., Inoue H., Tanisaka T.	Ef7 Encodes an ELF3-like Protein and Promotes Rice Flowering by Negatively Regulating the Floral Repressor Gene Ghd7 under Both Short- and Long-Day Conditions.	Plant Cell Physiol.	53(4)	717-28	2012	GHD7,SE1,HD3B	Ghd2, Ghd7, OsGhd7, OsCCT26, OsCMF8, OsI, Ghd7/Hd4, Hd4, EH7-1/Hd4, Ghd7-0a, EH7-1, EH7/Ghd7, EH7, OsEH7, GLW7.1, OsGLW7.1,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, OsHd1,  Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,Hd17, EF7, Ef7, OsELF3-1, ELF3-1, OsELF3, ELF3, ELF3_chr.6, OsELF3.1, ELF3.1, OsELF3a, ELF3a
33668	21373980	Zeng X., Yang X., Zhao Z., Lin F., Wang L., Pan Q.	Characterization and fine mapping of the rice blast resistance gene Pia.	Sci China Life Sci	54(4)	372-8	2011	PIA	Pi a, Pia, Pi-a, Pia-1, Pia-2
33669	21726398	Delteil A., Blein M., Faivre-Rampant O., Guellim A., Estevan J., Hirsch J., Bevitori R., Michel C., Morel J.B.	Building a mutant resource for the study of disease resistance in rice reveals the pivotal role of several genes involved in defence.	Mol. Plant Pathol.	13(1)	72-82	2012		
33670	18932023	Sakaguchi J, Fukuda H.	Cell differentiation in the longitudinal veins and formation of commissural veins in rice (Oryza sativa) and maize (Zea mays).	J Plant Res.	121(6)	593-602	2008		
33671	22914168	Gamuyao R., Chin J.H., Pariasca-Tanaka J., Pesaresi P., Catausan S., Dalid C., Slamet-Loedin I., Tecson-Mendoza EM., Wissuwa M., Heuer S.	The protein kinase PSTOL1 from traditional rice confers tolerance of phosphorus deficiency.	Nature	488(7412)	535-9	2012	_,PUPK20-2,_,PSTOL1,_	OsPupK04-1,OsPupK20-2, PupK20-2, DIR55, OsDIR55, OsjDIR55,OsPupK05-1,Pstol1, OsPSTOL1, OsPSTOL, PSTOL, Pstol1/OsPupK46-2, OsPupK46-2, Pup1, PHO,OsPupK29-1
33672	22875749	Shen H., Liu C., Zhang Y., Meng X., Zhou X., Chu C., Wang X.	OsWRKY30 is activated by MAP kinases to confer drought tolerance in rice.	Plant Mol. Biol.	80(3)	241-53	2012	WRKY30	OsWRKY30
33673	22903031	Yeh Y.F., Chang S.C., Kuo H.W., Tong C.G., Yu S.M., Ho T.H.	A metagenomic approach for the identification and cloning of an endoglucanase from rice straw compost.	Gene	519(2)	360-6	2013		
33675	11922106	Y Sato, A Nishimura, M Ito, M Ashikari, H Y Hirano, M Matsuoka	Auxin response factor family in rice.	Genes Genet. Syst.	76(6)	373-80	2001	MP,ETT1,ARF7A,ARF8,ETT2,ARF6B,ARF6A,RST1,ARF16,ARF2,ARF7B	OsMP, OsARF5, OsARF11, DLN125, OsDLN125, OsMP/OsARF11,OsARF15, ARF15, OsETT1, ARF3b, OsARF3b, OsARF3-1, ARF3-1, OsARF3, ARF3, DLN154, OsDLN154,OsARF7a, OsARF19, ARF19, OsARF7,OsARF8, OsARF12, ARF12,OsARF2, ARF2, OsETT2, ARF3a, OsARF3a, DLN16, OsDLN16, ARF3,OsARF6b, OsARF25, ARF25,OsARF6a, OsARF6, ARF6,OsARF10, ARF10, OsARF18, ARF18, OsRST1, GLR1, OsGLR1,OsARF16, OsARF2, OsARF1,OsARF2, OsARF4, ARF4,OsARF7b, OsARF21, DLN216, OsDLN216
33676	17408882	Wang D., Pei K., Fu Y., Sun Z., Li S., Liu H., Tang K., Han B., Tao Y.	Genome-wide analysis of the auxin response factors (ARF) gene family in rice (Oryza sativa).	Gene	394(1-2)	13-24	2007	ARF6A,ARF8,ARF17,ARF20,ARF24,ARF13,ARF7A,ARF8,ARF5,ARF14,RST1,ARF9,ETT2,ARF3,ARF6B,MP,ARF1,ARF2,ETT1,ARF7,ARF22,ARF7B,ARF16,ARF10,ARF16	OsARF6a, OsARF6, ARF6,OsARF8, OsARF12, ARF12,OsARF17,OsARF20,OsARF24,OsARF13, OsARF12, ARF12,OsARF7a, OsARF19, ARF19, OsARF7,OsARF8,OsARF5,OsARF14, OsETT4, ETT4, DLN153, OsDLN153, OsARF3la, ARF3la,OsARF10, ARF10, OsARF18, ARF18, OsRST1, GLR1, OsGLR1,OsARF9,OsARF2, ARF2, OsETT2, ARF3a, OsARF3a, DLN16, OsDLN16, ARF3,OsARF3, ETT3, Os ETT3, OsETT3, DLN20, OsDLN20, ARF4, OsARF3lb, ARF3lb,OsARF6b, OsARF25, ARF25,OsMP, OsARF5, OsARF11, DLN125, OsDLN125, OsMP/OsARF11,OsARF1, arf1, OsARF23, ARF23,OsARF2, OsARF4, ARF4,OsARF15, ARF15, OsETT1, ARF3b, OsARF3b, OsARF3-1, ARF3-1, OsARF3, ARF3, DLN154, OsDLN154,OsARF7,OsARF22,OsARF7b, OsARF21, DLN216, OsDLN216,OsARF16,OsARF10,OsARF16, OsARF2, OsARF1
33677	19193962	Kotb A Attia, Amr F Abdelkhalik, Megahed H Ammar, Wei C., Yang J., David A Lightfoot, Wagih M El-Sayed, Hany A El-Shemy	Antisense phenotypes reveal a functional expression of OsARF1, an auxin response factor, in transgenic rice.	Curr Issues Mol Biol	11 Suppl 1	i29-34	2009	ARF1	OsARF1, arf1, OsARF23, ARF23
33678	21087465	Jun Cheul Ahn, Dae-Won Kim, Young Nim You, Min Sook Seok, Jeong Mee Park, Hwang H., Beom-Gi Kim, Luan S., Hong-Seog Park, Hye Sun Cho	Classification of rice (Oryza sativa L. Japonica nipponbare) immunophilins (FKBPs, CYPs) and expression patterns under water stress.	BMC Plant Biol.	10	253	2010	CYP20-2,FKBP20-1B,LRT2,CYP59B,CYP23,CYP21-1,FKBP16-1,FKBP20-1A,FKBP17-1,TIG,CYP18-2,CYP18-4,CYP19-3,CYP22,CYP26-2,CYP28,CYP37,CYP38,CYP40A,CYP40B,CYP57,CYP59A,CYP63,CYP65,CYP71,CYP20-3,FKBP59,FKBP12,FKBP13 ,FKBP15-1,FKBP15-2,FKBP16-2,FKBP16-3,FKBP16-4,FKBP17-2,FKBP18,FKBP19,FKBP42B,FKBP20-2,FKBP42A,FKBP53,BIP122,FKBP44,FKBP75,FKBP73,FKBP46,FKBP57,FKBP72,CYP95,CYP20-1,CYP17,CYP18-1,CYP21-4,CYP19-4,FKBP62A,FKBP62B	OsCYP20-2, OsCYP-11, OsNuCYP20-2,OsFKBP20-1b,CYC2, cyc2*, cyc2, OsCYP2, Cyp2, OsCYP19-2, CYP19-2, OsCYP-2, OsCyp2-P, OsCyp2, OsCYP19-1, LRT2/OsCYP2, lrt2*, lrt2, Ppcti ,OsCYP59b, OsCYP-15, OsCYP59-2,OsCYP23, OsCYP-28, OsCYP23a, OsCYP23b, OsCYP23c,OsCYP21-1, OsCYP-24,OsFKBP16-1,OsFKBP20-1a, OsFKBP20,OsFKBP17-1,OsTIG,OsCYP18-2, OsCYP-23, OsCYP18-2a, OsCYP18-2b, OsCYP18-2c, SIP12 ,OsCYP18-4, OsCYP-26, OsCYP18-3,OsCYP19-3, Cyp1, OsCYP-25, OsCYP19-2a, OsCYP19-2b,OsCYP22, OsCYP-10,OsCYP26-2, OsCYP-1, OsCYP26-1,OsCYP28, OsCYP-21, OsCYP28a, OsCYP28b, OsCYP28c, OsCYP28d,OsCYP37, OsCYP37a, OsCYP37b,OsCYP38, OsCYP38a, OsCYP38b,OsCYP40a, OsCYP-13, OsCYP40-1a, OsCYP40-1b,OsCYP40b, OsCYP-8, OsCYP40-2,OsCYP57, OsCYP-3, OsCYP57a, OsCYP57b,OsCYP59a, OsCYP-14, OsCYP59-1,OsCYP63, OsCYP-18,OsCYP65, OsCYP-9,OsCYP71, OsWD40-164, OsCYP-22, OsCYP71a, OsCYP71b,OsCYP20-3, OsCYP-5,OsFKBP59, OsFKBP15-3, FKBP15-3 ,OsFKBP12,OsFKBP13,OsFKBP15-1,OsFKBP15-2,OsFKBP16-2,OsFKBP16-3,OsFKBP16-4,OsFKBP17-2,OsFKBP18,OsFKBP19,OsFKBP42b, OsFKBP42a, FKBP42a ,OsFKBP20-2,OsFKBP42a, OsFKBP42b, FKBP42b ,OsFKBP53, OsFKBP53b, FKBP53b, OsFKBP43, FKBP43 ,OsFKBP58, FKBP58, OsFKBP53a, FKBP53a, OsBIP122,OsFKBP44, OsFKBP53b, FKBP53b ,OsFKBP62c, FKBP62c, OsFKBP75,OsFKBP73, OsFKBP65a, FKBP65a ,OsFKBP46, OsFKBP65c, FKBP65c,OsFKBP57, OsFKBP65b, FKBP65b,OsFKBP72,OsCYP95, OsCYP-6, OsCYP95a, OsCYP95b,OsCYP20-1, OsCYP-17, OsCYP20-1a, OsCYP20-1b,OsCYP17, OsCYP-4,OsCYP18-1, OsCYP-12,OsCYP21-4, OsCYP-19, OsCYP21-2a, OsCYP21-2b, OsCYP21-2c,OsCYP19-4, OsCYP-16, OsCYP19-3, OsCYP19-4.1, OsCYP19-4.2, OsCYP19-4.3, OsCYP19-4.4, OsCYP19-4.5, OsCYP19-4.6, OsCYP19-4.7, OsCYP19-4.8,OsFKBP62a, FKBP62a, OsFKBP64, FKBP64,OsFKBP62b, OsFKBP65, FKBP62b, FKBP65
33681	21904112	Shimada T.L., Ogawa Y., Shimada T., Hara-Nishimura I.	A non-destructive screenable marker, OsFAST, for identifying transgenic rice seeds	Plant Signaling and Behavior	6	1454-1456	2011		
33682	22548273	Takahashi R., Ishimaru Y., Shimo H., Ogo Y., Senoura T., Nishizawa N.K., Nakanishi H.	The OsHMA2 transporter is involved in root-to-shoot translocation of Zn and Cd in rice.	Plant Cell Environ.	35(11)	1948-57	2012	SUT1,HMA2	OsSUT1, OsSUT2,OsHMA2, osHMA2, OsHMA2v 
33683	21108023	Ardie S.W., Nishiuchi S., Liu S., Takano T.	Ectopic expression of the K+ channel beta subunits from Puccinellia tenuiflora (KPutB1) and rice (KOB1) alters K+ homeostasis of yeast and Arabidopsis.	Mol. Biotechnol.	48(1)	76-86	2011	AKT1,KOB1	OsAKT1, Os-AKT1,OsKOB1, OsAKR3, AKR3
33684	21670506	Oda K., Otani M., Uraguchi S., Akihiro T., Fujiwara T.	Rice ABCG43 is Cd inducible and confers Cd tolerance on yeast.	Biosci. Biotechnol. Biochem.	75(6)	1211-3	2011		
33687	0	Hirose T., Mizutani R., Mitsui T., Terao T.	A chemically inducible gene expression system and its application to inducible gene suppression in rice	Plant Prod. Sci.	15	73-78	2012	SPS1	sps1, OsSPS1, SPS
33688	22528669	Takahashi S., Kimura S., Kaya H., Iizuka A., Wong H.L., Shimamoto K., Kuchitsu K.	Reactive oxygen species production and activation mechanism of the rice NADPH oxidase OsRbohB.	J. Biochem.	152(1)	37-43	2012	RBOHB	rbohB, OsrbohB, Os rbohB, OsRbohB, OsNox1, Nox1, Os-RbohB, RbohB, OsRboh1, Rboh1
33689	22526427	Nuruzzaman M., Sharoni A.M., Satoh K., Moumeni A., Venuprasad R., Serraj R., Kumar A., Leung H., Attia K., Kikuchi S.	Comprehensive gene expression analysis of the NAC gene family under normal growth conditions, hormone treatment, and drought stress conditions in rice using near-isogenic lines (NILs) generated from crossing Aday Selection (drought tolerant) and IR64.	Mol. Genet. Genomics	287(5)	389-410	2012	NAC96,TMS5,NAC3,NAC24	NAC94, ONAC096, ONAC96, NAC4, OsNAC4, OsNAC94,tms5, NAC18, ONAC023, ONAC23, NAC23, TMS5/ONAC023, OsEnS-30,OsNAC3, NAC67, ONAC067, OnNAC3*, OsNAC3/ONAC067, DLN180, OsDLN180,NAC94, ONAC024, ONAC24, OsNAC024, NAC024
33690	22644443	Kakei Y., Ishimaru Y., Kobayashi T., Yamakawa T., Nakanishi H., Nishizawa N.K.	OsYSL16 plays a role in the allocation of iron.	Plant Mol. Biol.	79(6)	583-94	2012	YSL18,YSL16,YSL15,YSL2	OsYSL18, OsYs2 ,OsYSL16, Os-YSL16, OsYs14 ,OsYSL15, OsYs7,OsYSL2, Os-YSL2, OsYs6 
33691	22626555	Shindo H., Suzuki R., Tsuchiya W., Taichi M., Nishiuchi Y., Yamazaki T.	PHD finger of the SUMO ligase Siz/PIAS family in rice reveals specific binding for methylated histone H3 at lysine 4 and arginine 2.	FEBS Lett.	586(13)	1783-9	2012	SIZ1	OsSIZ1, OsSIZ1.1, OsSIZ1.2, OsSIZ1.3, DLN131, OsDLN131, OsPHD23, PHD23
33692	22751305	Kurusu T., Iida H., Kuchitsu K.	Roles of a putative mechanosensitive plasma membrane Ca ( 2+) -permeable channel OsMCA1 in generation of reactive oxygen species and hypo-osmotic signaling in rice.	Plant Signal Behav	7(7)	1-3	2012	DMT1	OsMCA1, MCA1, OsDMT1, OsDMT1/OsMCA1
33693	22732245	Chen Z.C., Yamaji N., Motoyama R., Nagamura Y., Ma J.F.	Up-Regulation of a Magnesium Transporter Gene OsMGT1 Is Required for Conferring Aluminum Tolerance in Rice.	Plant Physiol.	159(4)	1624-33	2012	ZOS12-02,MRS2-2	OsART1, STAR3, OsZOS12-02, ART1,OsMGT1, OsMRS2-2, MGT1
33694	22751306	Ishimaru Y., Bashir K., Nakanishi H., Nishizawa N.K.	OsNRAMP5, a major player for constitutive iron and manganese uptake in rice.	Plant Signal Behav	7(7)	1-4	2012	LCD1	NRAMP5, OsNRAMP5, OsNramp5, OsLCD1
33695	22681566	Izawa T.	Physiological significance of the plant circadian clock in natural field conditions.	Plant Cell Environ.	35(10)	1729-41	2012	LHY,GI,TOC1	LHY, Os-LHY, OsLHY,OsGI, Gi, Os-GI,OsTOC1, OsPRR1, Os-PRR1, PRR1, OsRRA21, OsCCT07
33696	22683629	Nuruzzaman M., Sharoni A.M., Satoh K., Al-Shammari T., Shimizu T., Sasaya T., Omura T., Kikuchi S.	The thioredoxin gene family in rice: Genome-wide identification and expression profiling under different biotic and abiotic treatments.	Biochem. Biophys. Res. Commun.	423(2)	417-23	2012		
33697	22764280	Hirose F., Inagaki N., Hanada A., Yamaguchi S., Kamiya Y., Miyao A., Hirochika H., Takano M.	Cryptochrome and Phytochrome Cooperatively but Independently Reduce Active Gibberellin Content in Rice Seedlings under Light Irradiation.	Plant Cell Physiol.	53(9)	1570-82	2012	GA2OX8,GA2OX10,GA20OX3,GA3OX1,CRY1B,GID1,PRL5,GA2OX6,GA2OX7,GA2OX5,GA2OX2,GA2OX1,CRY2,GID2,GA2OX9,GA2OX3,GNP1,SLR1,CRY1A,SD1,SBI	OsGA2ox8,OsGA2ox10,OsGA20ox3, ga20ox3,OsGA3ox1, GA3ox1, OsGA3OX1,OsCRY1b, OsCRY2, CRY1b, CRY1, OsCCT1b, CCT1b,gid1, OsGID1, Thl, Os GID1,OsGA20ox4, ga20ox4, GA20ox2, Prl5, Prl5/GA20ox4, OsPrl5,OsGA2ox6,OsGA2ox7,OsGA2ox5, 2-ODD32, Os2-ODD32, 2ODD32, Os2ODD32,OsGA2ox2, ga2ox 2, OsGA2ox-2,OsGA2ox1, ga2ox-1, OsGA2ox-1, ga2ox, ga2ox 1, GA2ox1,OsCRY2,gid2, GF14e, OsGF14e, OsGID2, 14-3-3e,OsGA2ox9, GA2ox7, 2-ODD35, Os2-ODD35, 2ODD35, Os2ODD35,OsGA2ox3, ga2ox 3, OsGA2ox-3, GA2ox3, GA2ox-3, GA2ox4,GA20OX1, OsGA20ox1, 20ox1, GA20ox-1, ga20ox1, Os20ox, C20OX2, OsGA20ox2, OsGA20ox-1, GA20ox1, OsGNP1,slr1-1, slr1, slr, GAI, OsGAI, OsSLR1, Os SLR1, OsRGA1, OsGRAS-18, OsGRAS-18, GRAS-18, GRAS18, SLR-1,OsCRY1a, OsCRY1, CRY1a, CRY2, OsCCT1a, CCT1a,sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2, OsPHQ1, OsPHq1, PHq1,GA2OX4, OsGA2ox4, ga2ox 4, OsGA2ox-4, OsSBI
33698	22824965	Wakasa Y., Hayashi S., Takaiwa F.	Expression of OsBiP4 and OsBiP5 is highly correlated with the endoplasmic reticulum stress response in rice.	Planta	236(5)	1519-27	2012	BZIP50,BIP3,IRE1,BIP2,BIP4,BIP5,BIP1	OsbZIP60, bZIP50, OsbZIP50, OsbZIP74, bZIP74, OsbZIP50-S,OsBiP3, BiP3,OsIRE1, OsIre1,OsBiP2, Bip2,OsBiP4, BiP4, OsMed37_5, Med37_5, BiP2,OsBiP5, OsBiP, BiP, BiP5, OsMed37_7, Med37_7,OsBiP1, BiP1, BiP, Bip3, OsBiP3, BIP1/OsBIP3, OsMed37_2, Med37_2 
33699	22843988	Umezu N., Umeki N., Mitsui T., Kondo K., Maruta S.	Rice kinesin O12 is identical to kinesin OsKCH1.	J. Biochem.	152(2)	207-8	2012	_	OsKCH1, KCH1, OsKCH, KCH, O12
33702	0	Vu H.T.T., Manangkil O.E., Mori N., Yoshida S., Nakamura C.	Induction and repression of gene expression mediating ethylene biosynthesis and sodium/proton exchange in rice seedlings under submergence stress	Biotechnology and Biotechnological Equipment	26	2945-2951	2012	ACS3,ACO5,NHX1,ACO7,ACO4,NHX4,ACO2,GPA6,ACO3,ACS4,ACS5,ACO1,ACS2,ACS1	ACC3*, ACC3, OsACS3, OS-ACS3, OsACC3,OsACO5, 2-ODD14, Os2-ODD14, 2ODD14, Os2ODD14,OsNHX1, OcNHX1, OgNHX1, OrNHX1, OpNHX1, ObNHX1,OsACO7,OsACO4,OsNHX4,OsACO2, OsACO1,OsNHX5, NHX5, OsGPA6,OsACO3, ACO2, OsACO2,OsACS4, OS-ACS4,OsACS5, OS-ACS5, OsBphi008a,OsACO1, ACO,OsACS2, Os-ACS2,ACC1*, OsACS1, Os-ACS1, ACC1, OsACC1
33706	0	Teramura H., Enomoto Y., Aoki H., Sasaki T., Shimada H.	A long 5 UTR of the rice OsMac1 mRNA enabling the sufficient translation of the downstream ORF	Plant Biotechnology	29	43-49	2012	MAC1	OsMac1, Mac1
33707	22891159	Shinya T., Motoyama N., Ikeda A., Wada M., Kamiya K., Hayafune M., Kaku H., Naoto S.	Functional characterization of CEBiP and CERK1 homologs in Arabidopsis and rice reveals the presence of different chitin receptor systems in plants.	Plant Cell Physiol.	53(10)	1696-706	2012	CEBIP,CERK1	CEBiP, Os-LYP1, LYP1, OsCEBiP,OsCERK1, OsLysM-RLK9, Os-CERK1, Os-LysM-RLK9, OsLysMRLK9, OsCERK1/OsLYK9, OsLYK9, LYK9
33708	22915302	Higo H., Tahir M., Takashima K., Miura A., Watanabe K., Tagiri A., Ugaki M., Ishikawa R., Eiguchi M., Kurata N., Sasaki T., Richards E., Takano M., Kishimoto N., Kakutani T., Habu Y.	DDM1 (Decrease in DNA Methylation) genes in rice (Oryza sativa).	Mol. Genet. Genomics	287(10)	785-92	2012	DDM1A,DDM1B	OsDDM1a, DDM1a, DLN225, OsDLN225, CHR746, OsCHR746,OsDDM1b, DDM1b, DDM1, DLN98, OsDLN98, CHR741, OsCHR741
33709	22824965	Wakasa Y., Hayashi S., Takaiwa F.	Expression of OsBiP4 and OsBiP5 is highly correlated with the endoplasmic reticulum stress response in rice	Planta	236(5)	1519-27	2012		
33711	21429786	Miura K., Ashikari M., Matsuoka M.	The role of QTLs in the breeding of high-yielding rice.	Trends Plant Sci.	16(6)	319-26	2011	HD5,GHD7,APO1,GW5	Hd5(t)*, Hd5, qHD5, HAP3H, OsHAP3H, NF-YB, CBF-A, DTH8 , qHD5(t)*, Ghd8, Ghd8/DTH8, Lhd1, NF-YB11, OsNF-YB11, NFYB11, LH8, DTH8/Ghd8, RH8, DTH8/Ghd8/LHD1, CAR8, DTH8/Ghd8/ OsHAP3H, EF8, OsEF8,Ghd2, Ghd7, OsGhd7, OsCCT26, OsCMF8, OsI, Ghd7/Hd4, Hd4, EH7-1/Hd4, Ghd7-0a, EH7-1, EH7/Ghd7, EH7, OsEH7, GLW7.1, OsGLW7.1,apo1(t), apo1, SCM2, SCM2/APO1, OsFbox321, Os_F0393, Pbl6/APO1, Pbl6, OsPbl6,  OsFBX202, FBX202,qSW5/GW5, GSE5, OsGSE5, OsGW5, qSW5
33713	20934370	Hattori Y., Nagai K., Ashikari M.	Rice growth adapting to deepwater	Curr. Opin. Plant Biol.	14	100-105	2011		
33714	21429786	Miura K., Ashikari M., Matsuoka M.	The role of QTLs in the breeding of high-yielding rice	Trends Plant Sci.	16	319-326	2011		
33715	21873330	Ishida S., Morita K., Kishine M., Takabayashi A., Murakami R., Takeda S., Shimamoto K., Sato F., Endo T.	Allocation of absorbed light energy in PSII to thermal dissipations in the presence or absence of PsbS subunits of rice.	Plant Cell Physiol.	52(10)	1822-31	2011		
33716	21914655	Yoshida H., Nagato Y.	Flower development in rice.	J. Exp. Bot.	62(14)	4719-30	2011		
33717	21910771	Ikeda-Kawakatsu K., Maekawa M., Izawa T., Itoh J.I., Nagato Y.	ABERRANT PANICLE ORGANIZATION 2/RFL, the rice ortholog of Arabidopsis LEAFY, suppresses the transition from inflorescence meristem to floral meristem through interaction with APO1.	Plant J.	69(1)	168-80	2012	APO1,RFL	apo1(t), apo1, SCM2, SCM2/APO1, OsFbox321, Os_F0393, Pbl6/APO1, Pbl6, OsPbl6,  OsFBX202, FBX202,RFL, OSL, FL, APO2, APO2/RFL, SSC, SSC/RFL/APO2, OsRFL, OsFL, OsAPO2, OsSSC
33718	21947007	Navarro C., Abelenda J.A., Cruz-Or? E., Cu?llar CA., Tamaki S., Silva J., Shimamoto K., Prat S.	Control of flowering and storage organ formation in potato by FLOWERING LOCUS T.	Nature	478(7367)	119-22	2011	HD3A	Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a 
33719	22301968	Tanaka N., Itoh J., Nagato Y.	Role of rice PPS in late vegetative and reproductive growth.	Plant Signal Behav	7(1)	50-2	2012		
33720	22476293	Mimura M., Nagato Y., Itoh J.I.	Rice PLASTOCHRON genes regulate leaf maturation downstream of the gibberellin signal transduction pathway.	Planta	235(5)	1081-9	2012	SD1,PLA2,GA2OX3,PLA1,SLR1	sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2, OsPHQ1, OsPHq1, PHq1,pla2, pla2(pla2-1, pla2-2), plt2, LHD2, OsLHD2,OsGA2ox3, ga2ox 3, OsGA2ox-3, GA2ox3, GA2ox-3, GA2ox4,pla1, OsPLA1, plt1, CYP78A11,slr1-1, slr1, slr, GAI, OsGAI, OsSLR1, Os SLR1, OsRGA1, OsGRAS-18, OsGRAS-18, GRAS-18, GRAS18, SLR-1
33721	22429711	Hirano K., Kouketu E., Katoh H., Aya K., Ueguchi-Tanaka M., Matsuoka M.	The Suppressive Function of the Rice DELLA Protein SLR1 is Dependent on its Transcriptional Activation Activity.	Plant J.	71(3)	443-53	2012	GID1,GID2,SLR1	gid1, OsGID1, Thl, Os GID1,gid2, GF14e, OsGF14e, OsGID2, 14-3-3e,slr1-1, slr1, slr, GAI, OsGAI, OsSLR1, Os SLR1, OsRGA1, OsGRAS-18, OsGRAS-18, GRAS-18, GRAS18, SLR-1
33722	22419825	Yano K., Takashi T., Nagamatsu S., Kojima M., Sakakibara H., Kitano H., Matsuoka M., Aya K.	Efficacy of Microarray Profiling Data Combined with QTL Mapping for the Identification of a QTL Gene Controlling the Initial Growth Rate in Rice.	Plant Cell Physiol.	53(4)	729-39	2012		
33723	21952207	Takahashi Y., Shimamoto K.	Heading date 1 (Hd1), an ortholog of Arabidopsis CONSTANS, is a possible target of human selectionduring domestication to diversify floweringtimes of cultivated rice	Genes and Genetic Systems	86	175-182	2011	HD3A,SE1	Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, OsHd1,  Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21
33724	22574770	Sato-Izawa K., Nakaba S., Tamura K., Yamagishi Y., Nakano Y., Nishikubo N., Kawai S., Kajita S., Ashikari M., Funada R., Katayama Y., Kitano H.	DWARF50 (d50), a rice (Oryza sativa L.) gene encoding inositol polyphosphate 5-phosphatase, is required for proper development of intercalary meristem.	Plant Cell Environ.	35(11)	2031-44	2012	D12	d12(d50), dwf11, d50, d12, d32, F71, DMT9
33727	22476293	Mimura M., Nagato Y., Itoh J.I.	Rice PLASTOCHRON genes regulate leaf maturation downstream of the gibberellin signal transduction pathway	Planta	235	1081-1089	2012		
33728	24764503	Shen Q.J., Yu D., Jeon J.S., Piffanelli P., Abbruscato P., Guo Z.J., Zhang Y., Itoh T., Lee S.S., Buell C.R., Nagato Y., McCouch S., Yano M., Wang G.-l., Jena K.K., Xiong L., Meyers B., Jaiswal P., Yamazaki Y.	Nomenclature report on rice WRKYs - conflict regarding gene names and its solution	Rice (N Y)	5	3	2012		
33730	22889403	Itoh J.I., Hibara K.I., Kojima M., Sakakibara H., Nagato Y.	Rice DECUSSATE controls phyllotaxy by affecting the cytokinin signaling pathway.	Plant J.	72	869-881	2012	RR6,_,RR5,OSH1	OsRR6, rr6, Rra6, OsRRA6,DEC,rr5, OsRR5, Rra4, OsRRA4,OSKN1, Oskn1, OsKN1, OSH1/Oskn1, HB75
33732	0	Inukai Y., Sakamoto T., Morinaka Y., Miwa M., Kojima M., Tanimoto E., Yamamoto H., Sato K., Katayama Y., Matsuoka M., Kitano H.	ROOT GROWTH INHIBITING, a Rice Endo-1,4--d-Glucanase, Regulates Cell Wall Loosening and is Essential for Root Elongation	J. Plant Growth Regul.	31	373-381	2012		
33733	21338950	Sun C., Liu L., Tang J., Lin A., Zhang F., Fang J., Zhang G., Chu C.	RLIN1, encoding a putative coproporphyrinogen III oxidase, is involved in lesion initiation in rice	Journal of Genetics and Genomics	38	29-37	2011	RLIN1	CPO, CPOX, LLM1, HEMF, OsRLIN1, OsCPO, OsCPOX, OsLLM1, OsHEMF
33734	21793954	Manosalva P.M., Bruce M., Leach J.E.	Rice 14-3-3 protein (GF14e) negatively affects cell death and disease resistance.	Plant J.	68(5)	777-87	2011	GID2,POX3006,POX22.3	gid2, GF14e, OsGF14e, OsGID2, 14-3-3e,POX3006, prx114, Osprx114, PO-C1, POC-1, POC1, OsPOC1, Prx14, OsPrx14, POD3006, OsPOD3006,POX22.3, OSPER, OsPOX, POX, Pir3, prx111, POX22, OsPOX1, POX1, OsPOX22.3, OsPR9, PR9
33735	22369597	Lorieux M., Blein M., Lozano J., Bouniol M., Droc G., Di?vart A., P?rin C., Mieulet D., Lanau N., B?s M., Rouvi?re C., Gay C., Piffanelli P., Larmande P., Michel C., Barnola I., Biderre-Petit C., Sallaud C., Perez P., Bourgis F., Ghesqui?re A., Gantet P., Tohme J., Morel J.B., Guiderdoni E.	In-depth molecular and phenotypic characterization in a rice insertion line library facilitates gene identification through reverse and forward genetics approaches.	Plant Biotechnol. J.	10(5)	555-68	2012		
33737	0	Sun F., Qi W., Qian X., Wang Q., Yang M., Dong X., Yang J.	Investigating the Role of OsPDCD5, a Homolog of the Mammalian PDCD5, in Programmed Cell Death by Inducible Expression in Rice	Plant Molecular Biology Reporter	30	87-98	2012	_,PDCD5,HSP16.9C	OsBI-1, OsBI1, BI1,OsPDCD5,Oshsp16.9C, OsHsp16.9C, HSP16.9C, OsHSP16.9C-CI, Oshsp 16.9C
33738	22388489	Vega-Sanchez ME, Verhertbruggen Y, Christensen U, Chen X, Sharma V, Varanasi P, Jobling SA, Talbot M, White RG, Joo M, Singh S, Auer M, Scheller HV, Ronald PC.	Loss of Cellulose Synthase-Like F6 Function Affects Mixed-Linkage Glucan Deposition, Cell Wall Mechanical Properties, and Defense Responses in Vegetative Tissues of Rice	Plant Physiol.	159	56-69	2012	CSLF6	OsCslF6, OsCSLF6, OsCLD3, CLD3
33739	0	Ma J.Y., Chen S.L., Zhang J.H., Dong Y.J., Teng S.	Identification and Genetic Mapping of a lesion mimic Mutant in Rice	Rice Science	19	1-7	2012		
33740	0	Wang X. S., Zhu H. B., Jin G. L., Liu H. L., Wu W. R., Zhu J.	Genome-scale identification and analysis of LEA genes in rice (Oryza sativa L.)	Plant Science	172	414-420	2007	LEA18,LIP5,RAB16D,RAB16C,RAB16B,WSI18,RAB16A,LEA3-1,LEA16,LEA11,LEA34,LEA13,LEA1,LEA15,LEA6,LEA10,LEA31,LEA4,LEA2,LEA12,LEA7,LEA32,LEA9,LEA33,LEA14,LEA3,LEA17,EM,DHN1,LEA8,DHN6,LEA20,LEA30,LEA22	OsLEA18,OsLEA24, LEA24, WSI724, OsWSI724, OsLIP5,rab21, OsLEA26, Rab16D, OsRab16,rab21, OsLEA27, rab16C, OsRAB16C, DHD,rab21, OsLEA28, OsRAB16D, OsRab16d, Rab16d, OsRAB16b, XERO1, OsXERO1, OsRD22, RD22,OsLEA14, OsLEA14a, OsLEA14b, wsi18, pwsi18, OsWsi18, OsLEA14/WSI18,Rab16A, rab21, RAB21, OsRab21, OsRAB21, OsRAB-21, OsRab16A, OsLEA29, rab16A, OsRAB16A,OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3, OsLEA3A, LEA3A,OsLEA16,OsLEA11,OsLEA34,OsLEA13,OsLEA1, OsLEA2, LEA2,OsLEA15,OsLEA6,OsLEA10,OsLEA31,OsLEA4,OsLEA2, OsLEA4, LEA4,OsLEA12,OsLEA7, OsLEA7a, OsLEA7b, OsLEA7c,OsLEA32, OsEnS-55,OsLEA9, OsLEA5, LEA5,OsLEA33, D34, OsEnS-85,Lea14A, OsLEA5, OsEnS-2,OsLEA3, OsEnS-84,OsLEA17, OsLEA3-2, LEA3-2, LEA1,Em*, EMP1, Emp1, EM, Em, OsEm, Osem, OsLEA21, OsEm1, Em1 ,LIP9, OsLIP9, lip9, DHN1, DIP1, OsDip1, OsLEA23, OsDhn1, COR410, OsLEA23/DIP1, DIP1/OsLEA23,OsLEA8, OsLEA8a, OsLEA8b, OsLEA5, LEA5,OsLEA25, LEA25, OsEnS-143, OsRAB21, RAB21, Rab17, OsRab17,OsLEA20, OsLEA1, OsLEA1a,OsLEA30, OsEnS-43,OsLEA22, RAB25, OsRab16, Rab16, OsABA45, ABA45
33741	8650152	C R Anderson, E O Jensen, D J LLewellyn, E S Dennis, W J Peacock	A new hemoglobin gene from soybean: a role for hemoglobin in all plants.	Proc. Natl. Acad. Sci. U.S.A.	93(12)	5682-7	1996	Hb1	HB1, OsHB1, GLB1A, rHb1, ORYsa GLB1a, nsHb1, OsNSHB1, hb1, nsHb, OsPgb1.1, Pgb1.1
33742	22142166	Yamaguchi K., Imai K., Akamatsu A., Mihashi M., Hayashi N., Shimamoto K., Kawasaki T.	SWAP70 functions as a Rac/Rop guanine nucleotide-exchange factor in rice.	Plant J.	70(3)	389-97	2012	RAC1,_,RAC2,RAC4,_,_,RAC5,RAC3,RAC6,RAC7	OsRAC1, OsRac1, Os Rac1, Rac1, Os-Rac1,PBZ1,OsRAC2, OsRac2,OsRAC4, OsRac4, ROP4, OsRop4,OsSWAP70A, SWAP70A,OsSWAP70B, SWAP70B, SIP21,Osrac5, OsRac5, RACD, OsRacD, OsRACD,OsRac3,OsRacB, RacB, OsRac6,OSRAC7, OsRac7, ROP5, OsRop5
33743	18931976	Degenkolbe T., Phuc Thi Do, Zuther E., Repsilber D., Walther D., Dirk K Hincha, Karin I K?hl	Expression profiling of rice cultivars differing in their tolerance to long-term drought stress.	Plant Mol. Biol.	69(1-2)	133-53	2009	_	gp1
33744	20091079	Kumar M., P Osman Basha, Puri A., Rajpurohit D., Gursharn Singh Randhawa, Tilak Raj Sharma, Harcharan Singh Dhaliwal	A candidate gene OsAPC6 of anaphase-promoting complex of rice identified through T-DNA insertion.	Funct. Integr. Genomics	10(3)	349-58	2010	APC6	OsAPC6
33745	0	Hong C.Y., Chao Y.Y., Yang M.Y., Cheng S.Y., Cho S.C., Huei Kao C.	NaCl-induced expression of glutathione reductase in roots of rice (Oryza sativa L.) seedlings is mediated through hydrogen peroxide but not abscisic acid	Plant Soil	320	103-115	2009	APX8,GR1,GR2,GR3,RAB16A	OsAPx8, OsAPx08, OSAPX8, APx8, OsAPX8,OsGR1, OsGR2,OsGR2, RGRC2, OsGR, OsGR3, OsRGRC2,OsGR3,Rab16A, rab21, RAB21, OsRab21, OsRAB21, OsRAB-21, OsRab16A, OsLEA29, rab16A, OsRAB16A
33746	0	Morita S, Kaminaka H, Masumura T, Tanaka K	Induction of Rice Cytosolic Ascorbate Peroxidase mRNA by Oxidative Stress; the Involvement of Hydrogen Peroxide in Oxidative Stress Signalling	Plant Cell Physiol.	40(4)	417-422	1999	APX1	OsAPX1, APXa, OsAPXa, OsAPx01, OsAPx1, OSAPX1, APx1, cAPX, APX2, cAPXa, OscAPXa
33747	12559953	Jung-A Kim, Ganesh K Agrawal, Rakwal R., Keon Seon Han, Kyung-Nam Kim, Choong-Hyo Yun, Heu S., Sook-Young Park, Yong-Hwan Lee, Nam-Soo Jwa	Molecular cloning and mRNA expression analysis of a novel rice (Oryzasativa L.) MAPK kinase kinase, OsEDR1, an ortholog of Arabidopsis AtEDR1, reveal its role in defense/stress signalling pathways and development.	Biochem. Biophys. Res. Commun.	300(4)	868-76	2003	ACDR1	OsEDR1, OsACDR1, EDR1, OsMAPKKK1, MAPKKK1, SPL3, OsSPL3
33748	19904499	Jung-A Kim, Cho K., Singh R., Young-Ho Jung, Seung-Hee Jeong, So-Hee Kim, Jae-Eun Lee, Yoon-Seong Cho, Ganesh K Agrawal, Rakwal R., Tamogami S., Kersten B., Jong-Seong Jeon, An G., Nam-Soo Jwa	Rice OsACDR1 (Oryza sativa accelerated cell death and resistance 1) is a potential positive regulator of fungal disease resistance.	Mol. Cells	28(5)	431-9	2009	ACDR1	OsEDR1, OsACDR1, EDR1, OsMAPKKK1, MAPKKK1, SPL3, OsSPL3
33749	15749763	Kawagoe Y., Suzuki K., Tasaki M., Yasuda H., Akagi K., Katoh E., Naoko K Nishizawa, Ogawa M., Takaiwa F.	The critical role of disulfide bond formation in protein sorting in the endosperm of rice.	Plant Cell	17(4)	1141-53	2005	PRO13A.2,GLB1	Prol-19, OsEnS-94, RM1, OsRM1, pro13a.2, OsPRO13A.2, PROLM26,glb1(t)*, glb1(t), glb1, alpha-Glb, Glb-1, OsGlb1, Glb1, Glb, OsEnS-77
33750	11272832	H Nakashita, K Yoshioka, M Takayama, R Kuga, N Midoh, R Usami, K Horikoshi, K Yoneyama, I Yamaguchi	Characterization of PBZ1, a probenazole-inducible gene, in suspension-cultured rice cells.	Biosci. Biotechnol. Biochem.	65(1)	205-8	2001	PR10A	PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 
33751	19129653	Uchiyama R., Aoki K., Sugimoto H., Taka N., Katayama T., Itonori S., Sugita M., Fang-Sik Che, Kumagai H., Yamamoto K.	Phosphocholine-containing glycosyl inositol-phosphoceramides from Trichoderma viride induce defense responses in cultured rice cells.	Biosci. Biotechnol. Biochem.	73(1)	74-8	2009	PR10A	PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 
33752	19966496	Yasuda M., Isawa T., Shinozaki S., Minamisawa K., Nakashita H.	Effects of colonization of a bacterial endophyte, Azospirillum sp. B510, on disease resistance in rice.	Biosci. Biotechnol. Biochem.	73(12)	2595-9	2009	PR4,PR10A,PR1B,WRKY45,PR1A	OsPR4, OsPR4a, PR4a, OsPR-4,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1, OsPR1a, PR1a,OsWRKY45, OsWRKY45-1, OsWRKY45-2, WRKY45-1, WRKY45-2,OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1, OsPR1b, PR1alpha, OsPR1alpha
33753	12744513	Tanaka N., Fang-Sik Che, Watanabe N., Fujiwara S., Takayama S., Isogai A.	Flagellin from an incompatible strain of Acidovorax avenae mediates H2O2 generation accompanying hypersensitive cell death and expression of PAL, Cht-1, and PBZ1, but not of Lox in rice.	Mol. Plant Microbe Interact.	16(5)	422-8	2003	PAL1,CHT1,PR10A	OsPAL, Pal1*, Pal1, PAL, Pal_1, PalI, PAL2, OsPAL01, PAL01, OSPAL, CP-1, GP-1, OsPAL1, PAL3, OsPAL3,Cht1*(Chi1), Ch16, Cht1, CHT-1, CH16, RC24, OsChia1a, OsChia1, Chi1, Cht1*, Chi-1, Cht-1, Cht1, RCC1, OsCht-1, PR3, OsPR3,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 
33754	11437261	J D McGee, J E Hamer, T K Hodges	Characterization of a PR-10 pathogenesis-related gene family induced in rice during infection with Magnaporthe grisea.	Mol. Plant Microbe Interact.	14(7)	877-86	2001	PR10B,PR10A,PR10C	RPR10b, PR-10b, PR10b, PBZ1, PBZ-1, OsPBZc, OsPR10b, BetV, OsBetV,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,RPR10c, PR-10c, PR10c
33755	16673937	Lucie Mich??, Battistoni F., Gemmer S., Belghazi M., Barbara Reinhold-Hurek	Upregulation of jasmonate-inducible defense proteins and differential colonization of roots of Oryza sativa cultivars with the endophyte Azoarcus sp.	Mol. Plant Microbe Interact.	19(5)	502-11	2006	PR10A	PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 
33756	22215597	Anders N., Wilkinson M.D., Lovegrove A., Freeman J., Tryfona T., Pellny T.K., Weimar T., Mortimer J.C., Stott K., Baker J.M., Defoin-Platel M., Shewry P.R., Dupree P., Mitchell R.A.	Glycosyl transferases in family 61 mediate arabinofuranosyl transfer onto xylan in grasses.	Proc. Natl. Acad. Sci. U.S.A.	109(3)	989-93	2012	XAT2,XAT3	OsXAT2,OsXAT3
33757	22711282	Mulangi V., Chibucos M.C., Phuntumart V., Morris P.F.	Kinetic and phylogenetic analysis of plant polyamine uptake transporters.	Planta	236(4)	1261-73	2012	PUT1,PUT3,PUT2	OsPUT1, PUT, OsLAT1 ,OsPUT3, OsPUT3.1, OsPAR1, OsLAT5 ,OsPUT2, OsLAT7 
33758	21505434	Ogawa D., Abe K., Miyao A., Kojima M., Sakakibara H., Mizutani M., Morita H., Toda Y., Hobo T., Sato Y., Hattori T., Hirochika H., Takeda S.	RSS1 regulates the cell cycle and maintains meristematic activity under stress conditions in rice.	Nat Commun	2	278	2011	RSS1	
33759	23041461	Ogawa D., Morita H., Hattori T., Takeda S.	Molecular characterization of the rice protein RSS1 required for meristematic activity under stressful conditions.	Plant Physiol. Biochem.	61C	54-60	2012	RSS1	
33760	22984070	Yang J., Zhao X., Cheng K., Du H., Ouyang Y., Chen J., Qiu S., Huang J., Jiang Y., Jiang L., Ding J., Wang J., Xu C., Li X., Zhang Q.	A killer-protector system regulates both hybrid sterility and segregation distortion in rice.	Science	337(6100)	1336-40	2012	_,S5,HSR203J,BZIP50,CP1	OsBI-1, OsBI1, BI1,S5-3, S5-4,Hsr203j, OsHsr203j,OsbZIP60, bZIP50, OsbZIP50, OsbZIP74, bZIP74, OsbZIP50-S,OsCP1, Os CP1
33761	17763868	Kang S., Kang K., Lee K., Back K.	Characterization of rice tryptophan decarboxylases and their direct involvement in serotonin biosynthesis in transgenic rice.	Planta	227(1)	263-72	2007	TDC2,TYDC,TDC1	OsTDC2, OsTDC3,TyDC, OsTyDC, OsTYDC, TDC, OsTDC3, TDC3, OsTDC1,OsTDC, TDC, TDC2, OsTDC1, OsTDC4
33762	20978800	Young Soon Kim, Park S., Kang K., Lee K., Back K.	Tyramine accumulation in rice cells caused a dwarf phenotype via reduced cell division.	Planta	233(2)	251-60	2011		
33763	16371241	Hartung F., Puchta H.	The RecQ gene family in plants.	J. Plant Physiol.	163(3)	287-96	2006	-	OsRecQ1
33764	20086189	Li H., Pinot F., Sauveplane V., Dani?Nle Werck-Reichhart, Diehl P., Schreiber L., Franke R., Zhang P., Chen L., Gao Y., Liang W., Zhang D.	Cytochrome P450 family member cyp704B2 catalyzes the {omega}-hydroxylation of fatty acids and is required for anther cutin biosynthesis and pollen exine formation in rice.	Plant Cell	22(1)	173-90	2010	CYP704B2	OsCYP704B2
33765	12692345	Griffiths S., Roy P Dunford, Coupland G., David A Laurie	The evolution of CONSTANS-like gene families in barley, rice, and Arabidopsis.	Plant Physiol.	131(4)	1855-67	2003	-,-,-,-,-,-,BBX7,BBX9,CO3,CMF11,BBX12,BBX3,BBX25,BBX20,SE1,COL4	OsK,OsM,OsO,OsI,OsJ,OsL,OsN, OsBBX7, OsCCT08, OsCCT8, OsDTH2, CCT08, CCT8, DTH2,OsP, OsBBX9, OsCCT12, CCT12,OsB, OsCO3, OsBBX27, OsCO3/OsB, OsCCT31, CO3, BBX27, CCT31,OsCCT35, CCT35, OsCMF11, OsH, DLN240, OsDLN240,OsBBX12, OsC, OsCCT16, CCT16,OsBBX3, OsF, OsCCT05, CCT05,OsBBX25, OsG, OsCCT29, CCT29,OsBBX20, OsE, OsCCT23, CCT23,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, OsHd1,  Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,OsCOL4, OsD, OsBBX5, OsCOL4/OsD, OsCCT06, BBX5, CCT06
33766	19400948	Hemant R Kushwaha, Anil K Singh, Sudhir K Sopory, Sneh L Singla-Pareek, Pareek A.	Genome wide expression analysis of CBS domain containing proteins in Arabidopsis thaliana (L.) Heynh and Oryza sativa L. reveals their developmental and stress regulation.	BMC Genomics	10	200	2009	CBSCLC2,CBSCLC9,CBSCLC6,CBSX5,CBSCLC5,CBSCBS5,CBSCLC4,CBSX6,CBSCLC7,CBSX12,CBSX11,CBSX7,CBSCBS2,CBSX10,CBSCBS3,CBSDUF2,CBSCLC8,CBSPPR1,CBSX3,CBSDUFCH1,CBSX8,CBSCBSPB1,CBSX2,CBSX9,CBSCLC10,CBSIMPDH1,DPS1,CBSSIS1,CBSCBSPB4,CBSX4,CBSDUF3,CBSCBSPB2,CBSCBSPB3,CBSCBS4,CBSX1,CBSCLC1,CLC2	OsCBSCLC2, OsCLC2, CLC2,OsCBSCLC9, OsCBSCLC9a, OsCBSCLC9b,OsCBSCLC6, OsCBSCLC6a, OsCBSCLC6b, OsCLC6, CLC6,OsCBSX5,OsCBSCLC5, OsCLC5, CLC5,OsCBSCBS5, CBSX7, OsCBSX7,OsCBSCLC4, OsCLC4, CLC4,OsCBSX6,OsCBSCLC7, OsCLC7, CLC7,OsCBSX12,OsCBSX11,OsCBSX7, OsCBSX7a, OsCBSX7b, OsCBSCBS1, CBSCBS1,OsCBSCBS2,OsCBSX10, CBSCBS4, OsCBSCBS4,OsCBSCBS3,OsCBSDUF2,OsCBSCLC8,OsCBSPPR1,OsCBSX3, OsCBSX3a, OsCBSX3b, OsCBSX3c, OsCBSX3d, OsCBSX3e,OsCBSDUFCH1, OsCBSDUFCH1a, OsCBSDUFCH1b,OsCBSX8, CBSCBSCBD1, OsCBSCBSCBD1,OsCBSCBSPB1,OsCBSX2,OsCBSX9,OsCBSCLC10, OsCBSCLC10a, OsCBSCLC10b,OsCBSIMPDH1, OsCBSIMPDH1a, OsCBSIMPDH1b, IMPDH, OsIMPDH,OsCBSDUF1, OsCBSDUF1a, OsCBSDUF1b, CBSDUF1, CBSDUF1a, CBSDUF1b,OsCBSSIS1,OsCBSCBSPB4,OsCBSX4, OsCBSX4a, OsCBSX4b, OsCBSX4c, OsCBSX4d, OsCBSX4e, OsCBSX4f,OsCBSDUF3, OsSTA88,OsCBSCBSPB2,OsCBSCBSPB3,OsCBSCBS4, OsCBSCBS4a, OsCBSCBS4b, OsCBSCBS4c, OsCBSCBS4d, OsCBSCBS4e, CBSCBSCBD2, OsCBSCBSCBD2,OsCBSX1, Cen8.t00941,OsCBSCLC1, OsCLC1, CLC1,CBSCLC3, OsCBSCLC3, OsCBSCLC3a, OsCBSCLC3b, OsCLC1, OsCLC-1, OsCLC2, OsCLC-2, CLC-2, OsCLC3, CLC3
33767	20128882	Shou-Qiang Ouyang, Yun-Feng Liu, Liu P., Lei G., Si-Jie He, Ma B., Wan-Ke Zhang, Jin-Song Zhang, Shou-Yi Chen	Receptor-like kinase OsSIK1 improves drought and salt stress tolerance in rice (Oryza sativa) plants.	Plant J.	62(2)	316-29	2010	SIK1	OsSIK1, OsER2, ER2, OsERL, ERL
33768	0	Mackill D.J., Bonman J.B.	Inheritance of Blast Resistance in Near-lsogenic Lines of Rice	Phytopathology	82(7)	746-749	1992		
33769	0	Kinoshita T., Inukai T., Toriyama K.	IV. Reports from coordinators 1) Gene symbols for blast resistance newly revised	RGN	11	16-17	1994	PITA,PI3,PI5-2,PI11,PIZ,PIZ5,PI1	Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30, Trx30,Pi3, Pi5, Pi-3(t), Pi-3, Pi3(t), Pi5(t), Pi5-1, Pii,  RMg22, RMg21,Pi3, Pi5, Pi-3(t), Pi-3, Pi3(t), Pi5(t), Pi5-2, Pii,  RMg22, RMg21,Pi11(t)*(Pi zh), Pi11(t)*, Pizh, Pi-zh, Pi-zh*, Pi-zh(t), Pi-11(t), Pi-11, Pi11,Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2,Piz-5, Pi-z5, Piz5, Pi-2(t), Pi-2, Pi2,Pi1, Pi-1, Pi1-5C, Pi1-6C
33770	11361341	Wang Z., Taramino G., Yang D., Liu G., Tingey S.V., Miao G.H., Wang G.L.	Rice ESTs with disease-resistance gene- or defense-response gene-like sequences mapped to regions containing major resistance genes or QTLs.	Mol. Genet. Genomics	265(2)	302-10	2001	PIA	Pi a, Pia, Pi-a, Pia-1, Pia-2
33771	18838789	Kishine M., Nakamura S., Matsukura U., Ohtsubo K.	Cultivar identification of Korean rice based on DNA markers for blast resistance.	Biosci. Biotechnol. Biochem.	72(10)	2767-9	2008	PIB	Pi b(Pi s), Pis, Pib, Pi-s, Pi-hy
33772	18943771	Zhu M., Wang L., Pan Q.	Identification and characterization of a new blast resistance gene located on rice chromosome 1 through linkage and differential analyses.	Phytopathology	94(5)	515-9	2004	PI25,PI27,PID2,PISH,PIT	Pi25(t), Pi-25(t), RMg62,Pi27, Pi27(t), Pi-27(t),Pi-d2, Pi-d(t)2, PiD2(t), Pid2, PI-D2, Pi-d2(t), SDRLK-PID2, OsSDRLK-PID2,Pi sh, Pish, Pi-sh, Pish(t),Pit, Pit(K59), Pit(Npb), Pi-t, PitNpb, PitK59, Pit1, OsPit1
33773	16404154	Kim H.K., Lee S.K., Cho J.I., Lee S., An G., Jwa N.S., Kim B.R., Cho Y.C., Han S.S., Bhoo S.H., Lee Y.H., Hong Y.K., Yi G., Park D.S., Hahn T.R., Jeon J.S.	Characterization of rice mutants with enhanced susceptibility to rice blast.	Mol. Cells	20(3)	385-91	2005	PIB	Pi b(Pi s), Pis, Pib, Pi-s, Pi-hy
33774	12168952	Sirithunya P., Tragoonrung S., Vanavichit A., Pa-In N., Vongsaprom C., Toojinda T.	Quantitative trait loci associated with leaf and neck blast resistance in recombinant inbred line population of rice (Oryza sativa).	DNA Res.	9(3)	79-88	2002	PI22	Pi22, Pi-22, Pi 22
33775	20478538	Kawano Y., Akamatsu A., Hayashi K., Housen Y., Okuda J., Yao A., Nakashima A., Takahashi H., Yoshida H., Wong H.L., Kawasaki T., Shimamoto K.	Activation of a Rac GTPase by the NLR family disease resistance protein Pit plays a critical role in rice innate immunity.	Cell Host Microbe	7(5)	362-75	2010	PIT	Pit, Pit(K59), Pit(Npb), Pi-t, PitNpb, PitK59, Pit1, OsPit1
33776	19271956	Li W., Wang B., Wu J., Lu G., Hu Y., Zhang X., Zhang Z., Zhao Q., Feng Q., Zhang H., Wang Z., Wang G., Han B., Wang Z., Zhou B.	The Magnaporthe oryzae avirulence gene AvrPiz-t encodes a predicted secreted protein that triggers the immunity in rice mediated by the blast resistance gene Piz-t.	Mol. Plant Microbe Interact.	22(4)	411-20	2009	PIZT	Piz-t, Pi-zt, Pi-z(t), Pi2/Pizt, Pizt, Pi9, OsPiz-t
33777	18533827	Ballini E., Morel J.B., Droc G., Price A., Courtois B., Notteghem J.L., Tharreau D.	A genome-wide meta-analysis of rice blast resistance genes and quantitative trait loci provides new insights into partial and complete resistance.	Mol. Plant Microbe Interact.	21(7)	859-68	2008	PIY2,PIK,PITP,PI21,PI27,PI5-2,PI24,PIZT,PI33,PI9,PIB,PI44,IPI,IPI3,PIX,PIKUR1,PI21,PI25,PI15,PI23,PIF,PIIS1,PI22,PIKUR2,PISE1,PI36,PB1,PI6,PIKM,PID2,PISH,PIGM,PIT,PI11,PI7,PI8,PI26,PI10,PI20,PI24,PI25,PI27,PI39,PI12,PIQ1,PITA,PI26,PIY1,PITQ5,PITQ6,PI13,PIZ,PI12,PI13,PI14,PI14,PI16,PI17,PI18,PI28,PI29,PI30,PI31,PI32,PI38,PIG,PI25,PI35,PI62,PII2,PIKS,PID1,PICO39,PIA,PI3,PI1,PIM,PIKP,PIKH,PI37,PI34	Pi-y2, Pi-y2(t), Pi-y1(t), Piy2(t), Pi-y(t),Pik, RMg8, Pi-k, Pik-2, Pik-1, Pik1, Pik2, Pik-H4, Pikp-1, Pikh-1, Pik1-H4, Pikh-2, Pik2-H4,Pi-tp(t), Pitp(t), Pi-tp,pi21, rMg40, OsHMP26, HMP26, OsHIPP5, HIPP5, OsaHIP05, HIP05 ,Pi27, Pi27(t), Pi-27(t),Pi3, Pi5, Pi-3(t), Pi-3, Pi3(t), Pi5(t), Pi5-2, Pii,  RMg22, RMg21,Pi24, Pi24(t),Piz-t, Pi-zt, Pi-z(t), Pi2/Pizt, Pizt, Pi9, OsPiz-t,Pi33(t), RMg70, Pi-33(t), Pi-33, Pi33,Pi9(t), Pi9(t)*, Pi9, Pi-9(t),Pi b(Pi s), Pis, Pib, Pi-s, Pi-hy,Pi44(t)*, Pi44(t), Pi44, Pi-44(t),IPi(t)*, IPi. Rmg56,IPi3(t)*, IPi3, Rmg57,Pi-x(t), Pi-x1,Pi kur1*, PIKUR1, Pikur1*, Pikur1, RMg9, Pi-kur 1, Pi-kur1,Pi21(t)*, Pi21, RMg41, Pi-21(t), Pi21(t),Pi25(t), Pi-25(t), RMg62,Pi15(t), Pi15, RMg34.,Pi23(t)*, Pi23(t), Pi23, RMg43, Pi-23(t),Pi f, PIF, Pif, RMg3, Pi-f,Pi is1(Rb4), Rb4, Rb-4, Piis1, Pi-is-1,Pi22(t)*, Pi22, RMg42, pi22(t), Pi-22(t),Pi kur2*, PIKUR2, Pikur2, Pikur2*, RMg10, Pi-kur 2, Pi-kur2,Pi se1(Rb1), Rb1, Pise1, RMg11, Pi-se, Pi-se-1, Pise-1, Rb-1,Pi36(t), Pi36,Pb1, Pbst, RMG58.,Pi6(t)*, Pi6, Pi-6(t), pi6(t),Pik-m, Pi-m, Pi-km, Pikm, Pi m, Pikm1-TS, Pikm2-TS, Pi-km1, Pi-km2,Pi-d2, Pi-d(t)2, PiD2(t), Pid2, PI-D2, Pi-d2(t), SDRLK-PID2, OsSDRLK-PID2,Pi sh, Pish, Pi-sh, Pish(t),Pigm(t), Pi-gm(t), Pigm,Pit, Pit(K59), Pit(Npb), Pi-t, PitNpb, PitK59, Pit1, OsPit1,Pi11(t)*(Pi zh), Pi11(t)*, Pizh, Pi-zh, Pi-zh*, Pi-zh(t), Pi-11(t), Pi-11, Pi11,Pi7, Pi-7(t), Pi7(t),Pi8, Pi-8,Pi26(t), Pi26,Pi10(t)*, Pi10, Pi-10t, Pi-10, Pi-10(t),Pi20, Pi20(t),Pi24(t), Pi-24(t), Pi-24, Pi24,Pi25(t), Pi-25(t),Pi27(t), Pi-27(t),Pi39(t), Pi39,Pi12(t), Pi12(t)*, Pi12, Pi-12(t),Piq1*, Pitq1*, Pitq1, Pi-tq1, Pitq-1,Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30, Trx30,Pi26(t), Pi-26(t),Pi-y1(t), Pi-y(t), Piy1(t),Pitq5*, Pi-tq5, Pi-tq5, Pitq-5, Pitq5,Pi-tq6, Pitq6,Pi13(t), Pi13(t)*, Pi13,Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2,Pi12(t), Pi12(t)*, Pi12, Pi-12(t) ,Pi13(t), Pi13(t)*, Pi13, Pi-13(t)*,Pi14(t), Pi14(t)*, Pi14,Pi14(t), Pi14(t)*, Pi14,Pi16(t), Pi16, Pi-16(t),Pi17(t), Pi17, Pi-17(t),Pi18(t)*, Pi18(t), Pi18, Pi-18(t), Pi-18,Pi28(t), Pi-28(t),Pi-29(t), Pi29(t),Pi-30(t), Pi30(t),Pi-31(t), Pi31(t)*, Pi31(t),Pi-32(t), Pi32(t)*, Pi32(t),Pi38, Pi-38,Pi-g(t),Pi25, Pi25(t),Pi35(t),Pi62(t)*(=Pita?), Pi62(t)*, Pi62, Pi62(t), Pi-62(t),Pi i2, Pii2, Pii2(t),Pi-ks, Pi-s, Pik-s, Piks,Pi-d1, Pi-d(t), Pi-d(t)1, PiD1(t), Pid1, Pid1(t),PiCO39(t), Pi-CO39, Pi-CO39(t), pi-CO39(t),Pi a, Pia, Pi-a, Pia-1, Pia-2,Pi3, Pi5, Pi-3(t), Pi-3, Pi3(t), Pi5(t), Pi5-1, Pii,  RMg22, RMg21,Pi1, Pi-1, Pi1-5C, Pi1-6C,Pi-m, Pik-m(Pi m), Pik-m, Pi m, Pi-km,Pik-p, Pi-kp, Pikp, Pikp-1, Pikp-2,Pi-kh, Pi k-h, Pi54, Pi54rh, Pi-k(h), Pik-h, Pikh,Pi37(t), Pi37,Pi34, RMg71, Pi24(t)
33778	18944889	Hayashi N., Ando I., Imbe T.	Identification of a new resistance gene to a chinese blast fungus isolate in the Japanese rice cultivar aichi asahi.	Phytopathology	88(8)	822-7	1998	PITA,PI19	Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30, Trx30,Pi19(t), Pi14, Pi19
33779	19594308	Wang L., Xu X., Lin F., Pan Q.	Characterization of rice blast resistance genes in the Pik cluster and fine mapping of the Pik-p locus.	Phytopathology	99(8)	900-5	2009	PIK	Pik, RMg8, Pi-k, Pik-2, Pik-1, Pik1, Pik2, Pik-H4, Pikp-1, Pikh-1, Pik1-H4, Pikh-2, Pik2-H4
33780	15716503	Wisser R.J., Sun Q., Hulbert S.H., Kresovich S., Nelson R.J.	Identification and characterization of regions of the rice genome associated with broad-spectrum, quantitative disease resistance.	Genetics	169(4)	2277-93	2005		
33781	18944075	Jia Y., Bryan G.T., Farrall L., Valent B.	Natural Variation at the Pi-ta Rice Blast Resistance Locus.	Phytopathology	93(11)	1452-9	2003	PITA,PI6	Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30, Trx30,Pi6(t)*, Pi6, Pi-6(t), pi6(t)
33782	22355686	Nakao M., Nakamura R., Kita K., Inukai R., Ishikawa A.	Non-host resistance to penetration and hyphal growth of Magnaporthe oryzae in Arabidopsis.	Sci Rep	1	171	2011	PI21	pi21, rMg40, OsHMP26, HMP26, OsHIPP5, HIPP5, OsaHIP05, HIP05 
33783	15319478	B?hnert HU., Fudal I., Dioh W., Tharreau D., Notteghem J.L., Lebrun M.H.	A putative polyketide synthase/peptide synthetase from Magnaporthe grisea signals pathogen attack to resistant rice.	Plant Cell	16(9)	2499-513	2004	PI33	Pi33(t), RMg70, Pi-33(t), Pi-33, Pi33
33786	18433432	Collemare J., Pianfetti M., Houlle A.E., Morin D., Camborde L., Gagey M.J., Barbisan C., Fudal I., Lebrun M.H., B?hnert HU.	Magnaporthe grisea avirulence gene ACE1 belongs to an infection-specific gene cluster involved in secondary metabolism.	New Phytol.	179(1)	196-208	2008	PI33	Pi33(t), RMg70, Pi-33(t), Pi-33, Pi33
33787	17115220	Chen Q.H., Wang Y.C., Li A.N., Zhang Z.G., Zheng X.B.	Molecular mapping of two cultivar-specific avirulence genes in the rice blast fungus Magnaporthe grisea.	Mol. Genet. Genomics	277(2)	139-48	2007	PIT	Pit, Pit(K59), Pit(Npb), Pi-t, PitNpb, PitK59, Pit1, OsPit1
33789	12582534	Tabien E., Li Z., Paterson H., Marchetti A., Stansel W., Pinson M.	Mapping QTLs for field resistance to the rice blast pathogen and evaluating their individual and combined utility in improved varieties.	Theor. Appl. Genet.	105(2-3)	313-324	2002	PILM2,PIQ1,PITQ5,PITQ6	Pi-lm2, Pilm2, Pi lm2, Pib2,Piq1*, Pitq1*, Pitq1, Pi-tq1, Pitq-1,Pitq5*, Pi-tq5, Pi-tq5, Pitq-5, Pitq5,Pi-tq6, Pitq6
33790	17333252	Stoimenova M., Igamberdiev A.U., Gupta K.J., Hill R.D.	Nitrite-driven anaerobic ATP synthesis in barley and rice root mitochondria.	Planta	226(2)	465-74	2007		
33791	15141293	Yi G., Lee S.K., Hong Y.K., Cho Y.C., Nam M.H., Kim S.C., Han S.S., Wang G.L., Hahn T.R., Ronald P.C., Jeon J.S.	Use of Pi5(t) markers in marker-assisted selection to screen for cultivars with resistance to Magnaporthe grisea.	Theor. Appl. Genet.	109(5)	978-85	2004	PI5-2,PI3,PII	Pi3, Pi5, Pi-3(t), Pi-3, Pi3(t), Pi5(t), Pi5-2, Pii,  RMg22, RMg21,Pi3, Pi5, Pi-3(t), Pi-3, Pi3(t), Pi5(t), Pi5-1, Pii,  RMg22, RMg21,Pi i, Pii, Pi-i, Pii(t)
33793	15497407	Liu B., Zhang S., Zhu X., Yang Q., Wu S., Mei M., Mauleon R., Leach J., Mew T., Leung H.	Candidate defense genes as predictors of quantitative blast resistance in rice.	Mol. Plant Microbe Interact.	17(10)	1146-52	2004	PIGD2,PIGD3,PIGD1	Pi-GD-2(t), PiGD-2(t),Pi-GD-3(t), PiGD-3(t),Pi-GD-1(t), PiGD1, PiGD-1(t)
33794	18510771	Edwards J.D., Janda J., Sweeney M.T., Gaikwad A.B., Liu B., Leung H., Galbraith D.W.	Development and evaluation of a high-throughput, low-cost genotyping platform based on oligonucleotide microarrays in rice.	Plant Methods	4	13	2008		
33795	18943979	Campbell M.A., Chen D., Ronald P.C.	Development of Co-Dominant Amplified Polymorphic Sequence Markers in Rice that Flank the Magnaporthe grisea Resistance Gene Pi7(t) in Recombinant Inbred Line 29.	Phytopathology	94(3)	302-7	2004	PIK,PI7,PI44,PI1	Pik, RMg8, Pi-k, Pik-2, Pik-1, Pik1, Pik2, Pik-H4, Pikp-1, Pikh-1, Pik1-H4, Pikh-2, Pik2-H4,Pi7, Pi-7(t), Pi7(t),Pi44(t)*, Pi44(t), Pi44, Pi-44(t),Pi1, Pi-1, Pi1-5C, Pi1-6C
33796	16353550	Tosa Y., Osue J., Eto Y., Oh H.S., Nakayashiki H., Mayama S., Leong S.A.	Evolution of an avirulence gene, AVR1-CO39, concomitant with the evolution and differentiation of Magnaporthe oryzae.	Mol. Plant Microbe Interact.	18(11)	1148-60	2005	PICO39	PiCO39(t), Pi-CO39, Pi-CO39(t), pi-CO39(t)
33798	23025618	Ai,B., Wang,Z.S. and Ge,S.	Genome size is not correlated with effective population size in the oryza species	Evolution	66(10)	3302-3310	2012	_,CPD1,TFIIAGAMMA1,ADH1,LHS1,WX1	NP70,cbp1, R-CPD1, CBP I, CBP1, OsSCP65, SCP65,OsTFIIAgamma1, OsTFIIAc-1, TFIIAc-1, TFIIAgamma-1,Adh1, Adh1/2, adh1/adh2, OsADH1,OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO, OsLHS1, OsLG3b, LG3b, qLGY3, LGY3, DLN80, OsDLN80, OLR, OsOLR, GW3p6, OsGW3p6, OsMADS1GW3p6, MADS1GW3p6, qLGY3/OsLG3b/GW3p6,wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx
33799	22115274	Aliscioni,S., Bell,H.L., Besnard,G., Christin,P.A., Columbus,J.T., Duvall,M.R., Edwards,E.J., Giussani,L., Hasenstab-Lehman,K., Hilu,K.W., Hodkinson,T.R., Ingram,A.L., Kellog,E.A., Mashayekhi,S., Morrone,O., Osborne,C.P., Salamin,N., Schaefer,H., Spriggs,E., Smith,S.A. and Zuloaga,F.	New grass phylogeny resolves deep evolutionary relationships and discovers C4 origins	New Phytol.	193(2)	304-312	2012	_,NDHF,_,RBCL	trnK(TTT), trnK,ndhF,matK, ORF542 ,rbcL, rbcA, OsrbcL
33800	18973681	Argout,X., Fouet,O., Wincker,P., Gramacho,K., Legavre,T., Sabau,X., Risterucci,A.M., Da Silva,C., Cascardo,J., Allegre,M., Kuhn,D., Verica,J., Courtois,B., Loor,G., Babin,R., Sounigo,O., Ducamp,M., Guiltinan,M.J., Ruiz,M., Alemanno,L., Machado,R., Phillips,W., Schnell,R., Gilmour,M., Rosenquist,E., Butler,D., Maximova,S. and Lanaud,C.	Towards the understanding of the cocoa transcriptome: Production and analysis of an exhaustive dataset of ESTs of Theobroma cacao L. generated from various tissues and under various conditions	BMC Genomics	9	512	2008	ALDH5F1,ALDH2B2	OsALDH5F1, SSADH,OsALDH2B2
33801	0	Bouchenak-Khelladi,Y., Verboom,G.A., Hodkinson,T.R., Salamin,N., Francois,O., van der Bank,M., Chonghaile,G.N. and Savolainen,V.	The origins and diversification of C4 grasses and savanna- adapted ungulates	Glob Chang Biol	15(10)	2397 2417	2009	_,_	trnF(GAA), trnF, trnF-GAA,trnL(UAA), trnL, trnL-UAA
33802	22943852	Chattopadhyay,T., Roy,S. and Maiti,M.K.	Spatio-temporal regulation of the OsHFP gene promoter establishes the involvement of this protein in rice anther development	Biochem. Biophys. Res. Commun.	426(2)	280-285	2012	HFP	OsHFP
33803	0	Cheng,Y.Y., Fang,S.A., Lin,Y.C. and Chung,M.C.	A repetitive sequence specific to Oryza species with BB genome and abundant in Oryza punctata Kotschy ex Steud	Bot Stud	48	263-271	2007		
33804	0	Cheng,Z., Tang,K., Yan,H., Fu,J., Ying,F. and Huang,X.	Analysis of differentially expressed genes in Oryza meyeriana in response to infection by Xanthomonas oryzae pv. oryzae	Plant Breed.	129(4)	393-399	2010		
33805	0	Chun,J.B., Ha,B.K., Jang,D.S., Song,M., Lee,K.J., Kim,J.B., Kim,S.H., Kang,S.Y., Lee,G.J., Seo,Y.W. and Kim,D.S.	Identification of mutations in OASA1 gene from gamma-irradiated rice mutant population	Plant Breed.	131	267-281	2012	ASA1	OASA1 (=ASA1), OsASA1, OASA1, OASA1(D323N), OASA1D
33806	22808069	Cotsaftis,O., Plett,D., Shirley,N., Tester,M. and Hrmova,M.	A Two-Staged Model of Na(+) Exclusion in Rice Explained by 3D Modeling of HKT Transporters and Alternative Splicing	PLoS ONE	7 (7)	E39865	2012	SKC1,HKT7	OsHKT8, HKT8, Os-HKT1;5, OsHKT1;5, HKT1;5, SKC1, qSKC-1(t), OsSKC1,OsHKT7, OsHKT1;4, HKT1;4
33807	22500940	Dong,H., Zhang,L., Zheng,K., Yao,H., Chen,J., Yu,F., Yu,X., Mao,B., Zhao,D., Yao,J. and Li,D.	A Gaijin-like miniature inverted repeat transposable element is mobilized in rice during cell differentiation	BMC Genomics	13(1)	135	2012	MGING,_,MRLP1,MPING,_,_,_,_,DITTO-OS1,DITTO-OS2,EXPLORER-OS1,EXPLORER-OS2,GAIJIN-OS1,GAIJIN-OS2,GAIJIN-OS3,GAIJIN-OS4,WANDERER-OS1,WANDERER-OS2,WANDERER-OS3,WANDERER-OS4,WANDERER-OS5,WANDERER-OL1,EXPLORER-OS3,CASTAWAY-OS1,CASTAWAY-OS2	mGing,Gaijin,PLRRP, OsMRLP1,mPing,Gaijin,Gaijin,Gaijin,Gaijin,Ditto-Os1,Ditto-Os2,Explorer-Os1,Explorer-Os2,Gaijin-Os1,Gaijin-Os2,Gaijin-Os3,Gaijin-Os4,Wanderer-Os1,Wanderer-Os2,Wanderer-Os3,Wanderer-Os4,Wanderer-Os5,Wanderer-Ol1,Explorer-Os3,Castaway-Os1,Castaway-Os2
33808	0	Dong,R., Wang,X., Yan,C. and Chen,J.	The function of rice OsBBR1 in resistance to rice bacterial blight disease	Zhejiang Nong Ye Xue Bao	23(6)	1140-1146	2011	_	OsRP1L1, RP1L1, OsBBR1, BBR1, rNBS33
33809	22228816	Dutt,M., Ananthakrishnan,G., Jaromin,M.K., Brlansky,R.H. and Grosser,J.W.	Evaluation of four phloem-specific promoters in vegetative tissues of transgenic citrus plants	Tree Physiol.	32(1)	83-93	2012	RSUS2	sus2, RSus2(t), SUS2, SS1, OsScS1, RSs1, RSus2, OsSUS2, RSS1, RSus1, OsSusy2, Susy2, OsRSUS1, RSUS1
33810	22359654	Gao,D., Chen,J., Chen,M., Meyers,B.C. and Jackson,S.	A Highly Conserved, Small LTR Retrotransposon that Preferentially Targets Genes in Grass Genomes	PLoS ONE	7 (2)	E32010	2012	FRETRO64,FRETRO129,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_	FRetro64,FRetro129, SMART,osa-smRNA87,osa-smRNA1629,osa-smRNA11575,osa-smRNA15336,osa-smRNA26529,osa-smRNA27409,osa-smRNA28265,osa-smRNA41835,osa-smRNA55476,osa-smRNA60213,osa-smRNA73491,osa-smRNA83486 ,osa-smRNA95248 ,osac11smRNA288 ,osa-smRNA96292 ,osac1-smRNA38,osa-smRNA109754,osa-smRNA117590,osac1-smRNA25,osa-smRNA129401,osa-smRNA131555
33811	20457876	Garavito,A., Guyot,R., Lozano,J., Gavory,F., Samain,S., Panaud,O., Tohme,J., Ghesquiere,A. and Lorieux,M.	A genetic model for the female sterility barrier between Asian and African cultivated rice species	Genetics	185(4)	1425-1440	2010		
33812	22363621	Heang,D. and Sassa,H.	Antagonistic actions of HLH/bHLH proteins are involved in grain length and weight in rice	PLoS ONE	7 (2)	E31325	2012	ILI6,PIL16	ILI6, OsILI6, PGL1, OsPGL1,APG, OsPIL16, OsbHLH106
33813	21562713	Honma,Y., Yoshida,Y., Terachi,T., Toriyama,K., Mikami,T. and Kubo,T.	Polymorphic minisatellites in the mitochondrial DNAs of Oryza and Brassica	Curr. Genet.	57(4)	261-270	2011		
33814	22643901	Hua,L., Wu,J., Chen,C., Wu,W., He,X., Lin,F., Wang,L., Ashikawa,I., Matsumoto,T., Wang,L. and Pan,Q.	The isolation of Pi1, an allele at the Pik locus which confers broad spectrum resistance to rice blast	Theor. Appl. Genet.	125(5)	1047-55	2012	PIK,PI1	Pik, RMg8, Pi-k, Pik-2, Pik-1, Pik1, Pik2, Pik-H4, Pikp-1, Pikh-1, Pik1-H4, Pikh-2, Pik2-H4,Pi1, Pi-1, Pi1-5C, Pi1-6C
33815	22268451	Huang,C.L., Hung,C.Y., Chiang,Y.C., Hwang,C.C., Hsu,T.W., Huang,C.C., Hung,K.H., Tsai,K.C., Wang,K.H., Osada,N., Schaal,B.A. and Chiang,T.Y.	Footprints of natural and artificial selection for photoperiod pathway genes in Oryza	Plant J.	70(5)	769-782	2012	HD3A,SE1,EF1,PHYB	Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, OsHd1,  Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,phyB, PHYB1, OsPHYB, OsphyB, OsYHB, YHB, OsPHYB/OsYHB
33816	18408163	Kalendar,R., Tanskanen,J., Chang,W., Antonius,K., Sela,H., Peleg,O. and Schulman,A.H.	Cassandra retrotransposons carry independently transcribed 5S RNA	Proc. Natl. Acad. Sci. U.S.A.	105(15)	5833-5838	2008	CASSANDRA,_	Cassandra,
33817	17546083	Kawakami,S., Ebana,K., Nishikawa,T., Sato,Y., Vaughan,D.A. and Kadowaki,K.	Genetic variation in the chloroplast genome suggests multiple domestication of cultivated Asian rice (Oryza sativa L.)	Genome	50(2)	180-187	2007	_	ORF100
33818	7672603	Kiefer-Meyer,M.C., Reddy,A.S. and Delseny,M.	Characterization of a dispersed repetitive DNA sequence associated with the CCDD genome of wild rice	Genome	38(4)	681-688	1995		
33819	8851805	Kiefer-Meyer,M.C., Reddy,A.S. and Delseny,M.	Complex arrangement of dispersed repeated DNA sequences in Oryza officinalis	Genome	39(1)	183-190	1996		
33820	22859673	Kou,Y., Chang,Y., Li,X., Xiao,J. and Wang,S.	The rice RAD51C gene is required for the meiosis of both female and male gametocytes and the DNA repair of somatic cells	J. Exp. Bot.	63(14)	5323-5335	2012	RAD51C	OsRAD51C, OsRad51C, RAD51C-1, RAD51C-2, RAD51C-3
33821	22666315	Lu,L., Yan,W., Xue,W., Shao,D. and Xing,Y.	Evolution and association analysis of ghd7 in rice	PLoS ONE	7 (5)	E34021	2012	EF1,GHD7	Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,Ghd2, Ghd7, OsGhd7, OsCCT26, OsCMF8, OsI, Ghd7/Hd4, Hd4, EH7-1/Hd4, Ghd7-0a, EH7-1, EH7/Ghd7, EH7, OsEH7, GLW7.1, OsGLW7.1
33822	19672692	Luo,Y., Lv,G.L., Wu,W.T., Chen,S.N. and Cheng,Z.Q.	Analysis of genome expression in the response of Oryza granulata to Xanthomonas oryzae pv oryzae	Mol. Biol. Rep.	37(2)	875-892	2010		
33823	18687674	Lu,T., Yu,S., Fan,D., Mu,J., Shangguan,Y., Wang,Z., Minobe,Y., Lin,Z. and Han,B.	Collection and comparative analysis of 1888 full-length cDNAs from wild rice Oryza rufipogon Griff. W1943	DNA Res.	15(5)	285-295	2008		
33824	8251186	Mochizuki,K., Ohtsubo,H., Hirano,H., Sano,Y. and Ohtsubo,E.	Classification and relationships of rice strains with AA genome by identification of transposable elements at nine loci	Jpn. J. Genet.	68(3)	205-217	1993	_,_,_,_,_,_,_,_,_	p-SINE1-r1, p-SINE1-r1* ,p-SINE1-r2,p-SINE1-r3,p-SINE1-r4,p-SINE1-r5,p-SINE1-r6,p-SINE1-r7,Ret1,Tnr2
33825	3185503	Moon,E., Kao,T.H. and Wu,R.	Rice mitochondrial genome contains a rearranged chloroplast gene cluster	Mol. Gen. Genet.	213(2-3)	247-253	1988	_,_,_,RPL2,_,_,_,_,_,RBCL,_	trnM,atpE,trnM, trnM(CAU), trnM-CAU,rpl2,atpB,rbcL,trnV, trnV(UAC), trnV-UAC,atpE,atpB, AtpB, atpcf1, ATPbeta,rbcL, rbcA, OsrbcL,trnV.p, pseudo-trnV, trnV
33827	7916734	Reddy,A.S., Kiefer-Meyer,M.C. and Delseny,M.	Characterization of new variants of a satellite DNA from Oryza officinalis, specific for the CC genome of wild rice	Genome	36(4)	750-761	1993		
33828	0	Saha,P.S., Nandagopal,K., Ghosh,B. and Jha,S.	Molecular characterization of aromatic Oryza sativa L. cultivars from West Bengal, India	Nucleus (Calcutta)	55(2)	83-88	2012	SK2(T)(SCL, FGR)	sk2(t)(scl, fgr), fgr, scl, BAD2, BADH2, sk2, OsBADH2, Badh2, badh2, Os2AP, BADH-2, OsALDH10A8, ALDH10A8 
33829	22891238	Sang,X., Li,Y., Luo,Z., Ren,D., Fang,L., Wang,N., Zhao,F., Ling,Y., Yang,Z., Liu,Y. and He,G.	CHIMERIC FLORAL ORGANS 1, Encoding a Monocot-specific MADS-box Protein, Regulates Floral Organ Identity in Rice	Plant Physiol.	160(2)	788-807	2012	DL,CFO1	OsDL, dl(lop), lop, dl, dl1, OsDRPq3, DRPq3,OsMADS32, MADS32, OsCFO1, CFO1/OsMADS32, TRI1, OsTRI1 , OsMADS32/CFO, CFO, OsCFO
33830	22589467	Sasaki,A., Yamaji,N., Yokosho,K. and Ma,J.F.	Nramp5 is a major transporter responsible for manganese and cadmium uptake in rice	Plant Cell	24(5)	2155-2167	2012	LCD1,IRT1	NRAMP5, OsNRAMP5, OsNramp5, OsLCD1,OsIRT1, ZIP10, OsZIP10, OsZIP12, ZIP12
33831	0	Spalinskas,R., Van den Bulcke,M., Van den Eede,G. and Milcamps,A.	LT-RADE: an efficient user-friendly genome walking method applied to the molecular characterization of the insertion site of genetically modified maize MON810 and rice LLRICE62	Food Anal Methods	6	705-713	2012		
33832	22792078	Wang,K., Wang,M., Tang,D., Shen,Y., Miao,C., Hu,Q., Lu,T. and Cheng,Z.	The Role of Rice HEI10 in the Formation of Meiotic Crossovers	PLoS Genet.	8 (7)	E1002809	2012	RMC1,HEI10,PAIR3,ZEP1,RAD21-4	MER3, mer3, OsMER3, RCK, OsRCK, Os-MER3,HEI10A, HEI10B, OsHEI10,  OsRING434, RING434,,OsZEP1,OsRad21-4, REC8, OsREC8, OsRAD21-4
33833	0	Waters,D.L.E., Nock,C.J., Rice,N., Ishikawa,R. and Henry,R.J.	Chloroplast genome sequence confirms distinctness of Australian and Asian wild rice	Ecol Evol	2(1)	211-217	2012		
33834	22900499	Wu,K., Xu,T., Guo,C., Zhang,X. and Yang,S.	Heterogeneous evolutionary rates of Pi2/9 homologs in rice	BMC Genet.	13(1)	73	2012	PIZT,_,_,_,_,_	Piz-t, Pi-zt, Pi-z(t), Pi2/Pizt, Pizt, Pi9, OsPiz-t,,,,,Nbs1-Pi9, Nbs1-Pi2, Nbs1-NPB
33835	17660692	Xu,J.H., Cheng,C., Tsuchimoto,S., Ohtsubo,H. and Ohtsubo,E.	Phylogenetic analysis of Oryza rufipogon strains and their relations to Oryza sativa strains by insertion polymorphism of rice SINEs	Genes Genet. Syst.	82(3)	217-229	2007	_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_	p-SINE1-r1, p-SINE1-r1* ,p-SINE1-r2,p-SINE1-r401,p-SINE1-r402,p-SINE1-r403,p-SINE1-r404,p-SINE1-r405,p-SINE1-r406,p-SINE1-r411,p-SINE1-r412,p-SINE1-r413,p-SINE1-r414,p-SINE1-r421,p-SINE1-r422,p-SINE1-r423,p-SINE1-r431,p-SINE1-r432,p-SINE1-r433,p-SINE1-r441,p-SINE1-r442,p-SINE1-r443,p-SINE1-r444,p-SINE1-r445,p-SINE1-r446,p-SINE1-r447,p-SINE1-r448,p-SINE1-r449,p-SINE1-r450,p-SINE1-r451,p-SINE1-r452,p-SINE1-r69,p-SINE1-r34,p-SINE1-r58,p-SINE1-r210,p-SINE1-r30,p-SINE1-r51,p-SINE1-r53,p-SINE1-r54,p-SINE1-r56,p-SINE1-r57,p-SINE1-r62,p-SINE1-r215,p-SINE1-r502,p-SINE1-r505,p-SINE1-r506,p-SINE1-r507,p-SINE1-r510,p-SINE1-r55,p-SINE1-r59,p-SINE1-r60,p-SINE1-r61,p-SINE1-r501,p-SINE1-r503
33836	12561229	Yang,J.B., Wang,X.F., Zhao,C.S., Xiang,T.H. and Li,L.	[Cloning and sequencing of fragments associated with cytoplasm male sterility of rice]	Yi Chuan Xue Bao	29(9)	808-813	2002		
33837	22937009	Yang,R., Sun,C., Bai,J., Luo,Z., Shi,B., Zhang,J., Yan,W. and Piao,Z.	A Putative Gene sbe3-rs for Resistant Starch Mutated from SBE3 for Starch Branching Enzyme in Rice (Oryza sativa L.)	PLoS ONE	7 (8)	E43026	2012	SBE3	SBEIII*, SBEIII, Sbe3, RBE3, QEIIa, QEIIA, BEIIb, BEIIB, SBEIIb, OsBEIIb, sbe3, SBE III, OsSBEIIb, SBEIIb
33838	22136599	Yoshida,A., Ohmori,Y., Kitano,H., Taguchi-Shiobara,F. and Hirano,H.Y.	Aberrant spikelet and panicle1, encoding a TOPLESS-related transcriptional co-repressor, is involved in the regulation of meristem fate in rice	Plant J.	70(2)	327-339	2012	ASP1	OsLIS-L1, OsWD40-155, ASP1, TPR2, OsTPR2, OsREL2, REL2, OsTPL3, TPL3, OsTPL2, TPL2, ASP-LSL
33840	22870184	Zhang,T., Hu,S., Zhang,G., Pan,L., Zhang,X., Al-Mssallem,I.S. and Yu,J.	The Organelle Genomes of Hassawi Rice (Oryza sativa L.) and Its Hybrid in Saudi Arabia: Genome Variation, Rearrangement, and Origins	PLoS ONE	7 (7)	E42041	2012	PSAC,_,RPS18,_,RPS4,PSBA,_,RPS14,_,RPOC1,NDHF,RPS11,RPS7,RPOC2,_,RPOB,NDHB,_,_,_,16S  rRNA,_,_,_,_,PSBI,_,_,_,_,_,_,NDHJ,_,_,_,_,_,CLPP,PSBN,INFA,RPL36,_,_,_,_,RPS3,PSBH,YCF3,PSBD,_,_,NDHC,_,_,_,_,_,23S  rRNA,_,_,_,_,_,NDHE,RPS12,_,_,23S  rRNA,_,_,16S  rRNA,_,_,_,RPL23,4.5S  rRNA,PSBZ,PSBK,RPS7,YCF4,RPL22,PSBL,PSBF,PSBE,_,_,_,RPL33,RPS19,RPL32,NDHG,NDHK,PSBM,NDHI,NDHH,5S  rRNA,5S  rRNA,4.5S  rRNA,_,_,RPL23,RPS19,_,PETE,_,NDHB,RPS15,RPS15,PSAB,RPL2,RPS12,PETD,PETB,_,RPS16,NDHA,ATPF,RPS2,RPL16,PETA,_,NDHD,RPL2,RPS8,RPL14,PSAA,_,_,_,_,_,_,5S  rRNA,_,_,_,_,_,_,_,RPS7,_,_,_,_,_,RPS13,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,26S  rRNA,_,_,_,_,_,_,_,_,_,_,_,PSBB,RPOA,CCMC,RBCL,PSBC,NAD2,_,_,_,_,_,_,_,26S  rRNA,_,_,_,_,_,_,_,_,RPS1,_,_,NAD9,_,_,_,_,_,_,_,_,RPL16,NAD3,RPS12,_,_,RPS19,_,_,_,3'RPS12,GSLm,_,_,_,RPS2,_,_,RPL2,RPS3,_,_,NAD7,ORFX,NAD6,RPS4,_,NAD1,NAD4,NAD5,NAD4L	psaC, OsPSAC,cox1-2,rps18,orf162, orf162-2,rps4 ,PsbA, psbA, OsPsbA, PSBD1, OsPSBD1, psbD1,atpH,rps14 ,ORF133, ycf68,rpoC1, RPO beta', RPObeta', OsRPOC1,ndhF,rps11,rps7,rpoC2, RPO beta", RPObeta",ORF40, psbJ,rpoB, RpoB, Rpobeta,ndhB,trnS(GCU), trnS, trnS-GCU,trnQ(UUG), trnQ, trnQ-UUG,trnS(UGA), trnS, trnS-UGA,rrn16,trnfM(CAU), trnfM, trnfM-CAU,trnT(GGU), trnT, trnT-GGU,trnY(GUA), trnY, tmY-GUA,trnD(GUC), trnD, trnD-GUC,psbI,trnI(CAU), trnI, trnI-CAU,ORF29, petN,trnC, trnC(GCA), trnC-GCA,ORF106, accD,trnR(UCU), trnR, trnR-UCU,trnS(GGA), trnS, trnS-GGA,ORF159, ndhJ,trnT(UGU), trnT, trnT-UGU,trnM, trnM(CAU), trnM-CAU,psaI, ORF36,trnW(CCA), trnW, trnW-CCA,trnP(UGG), trnP, trnP-UGG,ORF216, ClpP, clpP,psbN, PsbN,infA,rpl36,trnH(GUG), trnH, trnH-GUG,matK, ORF542 ,trnK(UUU), trnK, trnK-UUU,trnV, trnV(UAC), trnV-UAC,rps3,psbH, psbF ,ORF170, ycf3, IRF170, ycf3-1, ycf3-2,psbD, D2, OsPsbD1, OsPsbD2,trnF(GAA), trnF, trnF-GAA,ORF133, ycf68,ndhC,trnV, trnV(GAC), trnV-GAC,trnI(GAU), trnI, trnI-GAU,trnA(UGC), trnA, trnA-UGC,orf42,ORF230, cemA,rrn23,trnR(ACG), trnR, trnR-ACG,trnN(GUU), trnN, trnN-GUU,ORF56, ndhH,ORF321, ccsA,trnL(UAG), trnL, trnL-UAG,ndhE,rps12,trnN(GUU), trnN, trnN-GUU,trnR(ACG), trnR, trnR-ACG,rrn23,orf42,trnI(GAU), trnI, trnI-GAU,rrn16,trnV, trnV(GAC), trnV-GAC,trnL(CAA), trnL, trnL-CAA,trnL(CAA), trnL, trnL-CAA, L-CAA,rpl23,rrn4.5,psbZ, lhbA, ORF62,psbK,rps7,Ycf4, ORF185,rpl22,psbL,psbF,psbE,ORF31, petL,ORF44, psaJ,rpl20,rpl33,rps19,rpl32, ORF63,ndhG,psbG, ndhK,psbM,ORF178, ndhI,ORF393, ndhH,rrn5,rrn5,rrn4.5,trnH(GUG), trnH, trnH-GUG,trnI(CAU), trnI, trnI-CAU,rpl23,rps19,trnA(UGC), trnA, trnA-UGC,petE, petG,atpI,ndhB, NDH2, NADH2,rps15,rps15,PsaB, psaB, PsAA2, psaA2,rpl2,rps12,petD, OsPETD,petB, OsPETB,trnL(UAA), trnL, trnL-UAA,rps16,ndhA,atpF, OsatpF,rps2,rpl16,petA, Cytf, cytF, Cyt f, OsPETA,atpA,ndhD, NdhD, NDH4, NADH4,rpl2,rps8,rpl14,PsaA, psaA, PsAA1, psaA1,atpE,trnG(GCC), trnG, trnG-GCC, trnG-UCC,trnS(GCT), trnS,trnC(GCA), trnC,trnM(CAT), trnM,orf187, orf187-2,rrn5,rrn18,trnQ(TTG), trnQ,trnI(CAT), trnI,trnD(GTC), trnD,trnN(GTT), trnN,trnK(TTT), trnK,trnP(TGG), trnP,rps7,trnM(CAT), trnM,trnH(GTG), trnH,trnP(TGG), trnP,trnW(CCA), trnW,orf153,rps13,atp1, atp1-1, ATP1,mat-r, mat-r-1,orf165, orf165-1,cob,mat-r-2,ccmFn-2,rps1-2,ccmFc-2,trnS(GCT), trnS,trnC(GCA), trnC,orf165-2,orf284-2,rpl5-2,trnY(GTA), trnY,trnF(GAA), trnF,rrn26,trnE(TTC), trnE,orf490,orf187-3,atp6-2,trnfM(CAT), trnfM,nad9, nad9-2,orf173, orf173-2,orf152b-2,orf187-4,rrn5,rrn18,psbB, OsPSBB,rope, rpoalpha, Rpoalpha, rope, RpoA ,ccmC, orf240,rbcL, rbcA, OsrbcL,psbC, cp43, OsPSBC, OsCP43,nad2, OsNAD2,nad3,rpl5, rpl5-1,trnS(GGA), trnS,atp1, atp1-2,trnE(TTC), trnE,trnY(GTA), trnY,orf25, atp4,rrn26,orf162, orf162-1,trnS(GGA), trnS,trnF(GAA), trnF,orf152a, orf152b,orf181,orf183,orf152b, orf152b-1, orf152,orf187, orf187-1,rps1, rps1a, rps1b, rps1-1,orf284, orf284-1,orf173, orf173-1, orf173b,nad9, nad9-1, CI-27kD, CI-27KD,orf161,trnS(TGA), trnS,trnC(GCA), trnC,trnR(TCT), trnR,ORF35, psbT,trnE(UUC), trnE, trnE-UUC,ycf15.p,ycf15.p,rpl16, pseudo-rpl16,nad3,rps12,orf224, orf224a, orf224b,orf176, orf173 ,rps19,ccmB,atpB, AtpB, atpcf1, ATPbeta,ccmFc, ccmFc-1,3'rps12, 3'-rps12, rps12,orf241, OsGSLm, OsGSLmt, GSLmt,coxI, COX1, cox1-1, cox1,cox2, coxII,orfB, atp8 ,rps2, orf483 ,ccmFn, ccmFn-1,orf160, orf160b ,rpl2,rps3,atp9, RMtATP9, aatp9,atp6, N-atp6, B-ATP6, B-atp6, atp6-1,nad7,orfX,nad6,rps4,cob, cob-1, cob-like, cyt c,nad1, Osnad1, nadI, nadIB,nad4, nadIV,nad5, OsNAD5,nad4L
33841	0	Zhang,W.H., Deng,H.F., Chen,L.B., He,Q., Shu,F., Chen,J.L. and Yuan,L.P.	Study of indica-japonica character of non-AA wild rice chloroplast DNA	J. Agric. Sci. Technol.	9	93-97	2007	_	ORF100
33842	22408071	Zhou,Y., Lu,D.F., Li,C.Y., Luo,J.H., Zhu,B., Zhu,J.J., Shangguan,Y.Y., Wang,Z.X., Sang,T., Zhou,B. and Han,B.	Genetic Control of Seed Shattering in Rice by the APETALA2 Transcription Factor SHATTERING ABORTION1	Plant Cell	24(3)	1034-1048	2012	SHAT1,QSH1,SH4	OsSHAT1, AP2/EREBP#043, AP2/EREBP43, AP2-5, DLN124, OsDLN124, ObSHAT1, OgSHAT1, OrSHAT1 ,qSH1, qsh1, qSH-1, RIL1, OsRIL1 ,sh4, SH4, SHAT2, SHA1, qSH4, QSH4, OsSh4, Sh4, Osh4, OsMSL23, MSL23
33843	8651913	R Rakwal, M Hasegawa, O Kodama	A methyltransferase for synthesis of the flavanone phytoalexin sakuranetin in rice leaves.	Biochem. Biophys. Res. Commun.	222(3)	732-5	1996	NOMT	OsNOMT, COMTL3, OsCOMTL3, OsCOMT29, COMT29
33844	10814825	Rakwal R., Agrawal G.K., Yonekura M., Kodama O.	naringenin 7-O-methyltransferase involved in the biosynthesis of the flavanone phytoalexin sakuranetin from rice (Oryza sativa L.).	Plant Sci.	155(2)	213-221	2000	NOMT	OsNOMT, COMTL3, OsCOMTL3, OsCOMT29, COMT29
33845	19811687	Xu Z., Zhang D., Hu J., Zhou X., Ye X., Kristen L Reichel, Nathan R Stewart, Ryan D Syrenne, Yang X., Gao P., Shi W., Doeppke C., Robert W Sykes, Jason N Burris, Joseph J Bozell, Max Zong-Ming Cheng, Douglas G Hayes, Labbe N., Davis M., C Neal Stewart, Joshua S Yuan	Comparative genome analysis of lignin biosynthesis gene families across the plant kingdom.	BMC Bioinformatics	10 Suppl 11	S3	2009	COMTL6,NOMT,COMTL1,COMTL4,COMTL5,COMTL2	OsCOMTL6, OsCOMT5, COMT5,OsNOMT, COMTL3, OsCOMTL3, OsCOMT29, COMT29,OsCOMTL1, OsCOMT27, COMT27,OsCOMTL4, COMT2, OsCOMT2,OsCOMTL5, OsCOMT4, COMT4,OsCOMTL2, OsCOMT3, COMT3
33846	0	Lopez-Gerena J.	Mapping QTL controlling durable resistance to rice blast in the cultivar Oryzica Llanos 5	Ph.D. Thesis. Kansas State Univ.		-	2006		
33847	0	Yanagihara S., Fukuta, Noda T., Wissuwa M., Kumashiro T.	Genetic improvement of rice varieties for Africa under new research collaboration between JIRCAS and Africa Rice Center	Second Africa Rice Congress proceedings		651-656	2010		
33848	0	Zhuang J.Y., Ma W.B., Wu J.L., Chai R.Y., Lu J., Fan Y.Y., Jin M.Z., Leung H., Zheng K.L.	Mapping of leaf and neck blast resistance genes with resistance gene analog, RAPD and RFLP in rice	Euphytica	128	363-370	2002	PI24,PI25	Pi24, Pi24(t),Pi25, Pi25(t)
33849	0	Fujii, Hayano-Saito Y., Sugiura N., Hayashi N., Izawa T., Iwasaki M.	Quantitative evaluation of protective effect of Pb1 gene, conferring field resistance to rice panicle blast, using near-isogenic lines	Breeding Research	7	75-85	2005		
33850	0	Telebanco-Yanoria M.J., Koide Y., Fukuta Y., Imbe T., Kato H., Tsunematsu H., Kobayashi N.	Development of near-isogenic lines of Japonica-type rice variety Lijiangxintuanheigu as differentials for blast resistance	Breed. Sci.	60	629-638	2010	PI5-2,PI3	Pi3, Pi5, Pi-3(t), Pi-3, Pi3(t), Pi5(t), Pi5-2, Pii,  RMg22, RMg21,Pi3, Pi5, Pi-3(t), Pi-3, Pi3(t), Pi5(t), Pi5-1, Pii,  RMg22, RMg21
33851	0	Ebitani T., Hayashi N., Omoteno M., Ozaki H., Yano M., Morikawa M., Fukuta Y.	Characterization of Pi13, a blast resistance gene that maps to chromosome 6 in indica rice (Oryza sativa L. variety, Kasalath)	Breed. Sci.	61	251-259	2011	PI13	Pi13(t), Pi13(t)*, Pi13, Pi-13(t)*
33852	0	Correa-Victoria F.J., Tharreau D., Martinez C., Vales M., Escobar F., Prado G., Aricapa G.	Gene Combinations for Durable Rice Blast. Resistance in Colombia	CIAT poster		-	2007	PI33	Pi33(t), RMg70, Pi-33(t), Pi-33, Pi33
33853	0	Koide Y., Kobayashi N., Xu D., Fukuta Y.	Resistance Genes and Selection DNA Markers for Blast Disease in Rice (Oryza sativa L.)	JARQ	43	255-280	2009	PI21,PISH,PIZT,PI37,PIK,PI12,PI5-2,PI21,PI8,PI67,PIZ5,PIIS1,PI6,PIIS2,PI11,PI10,PI7,PI20,PI15,PI23,PITP,PI24,PIQ1,PITA,PILM2,PISE2,PISE3,PITQ5,PITQ6,PI22,PI13,PI12,PIZ,PI13,PI14,PI14,PI16,PI17,PI18,PI19,PI24,PI25,PI25,PI28,PI29,PI30,PI31,PIF,PIG,PIGD1,PIGD3,PI27,PI40,PI27,PI34,PI35,PI39,PI39,PI44,PI62,PI157,PIGD2,PII2,PIKS,PIKUR1,PIY1,PIKUR2,PIY2,PI26,PID1,PII,PIGM,PICO39,PI36,PIA,PI33,PID2,PI3,PI9,PI1,PIKM,PIB,PIKP,PIT,PIKH,PI26,PI38,PISE1,PI32	pi21, rMg40, OsHMP26, HMP26, OsHIPP5, HIPP5, OsaHIP05, HIP05 ,Pi sh, Pish, Pi-sh, Pish(t),Piz-t, Pi-zt, Pi-z(t), Pi2/Pizt, Pizt, Pi9, OsPiz-t,Pi37(t), Pi37,Pik, RMg8, Pi-k, Pik-2, Pik-1, Pik1, Pik2, Pik-H4, Pikp-1, Pikh-1, Pik1-H4, Pikh-2, Pik2-H4,Pi12(t), Pi12(t)*, Pi12, Pi-12(t),Pi3, Pi5, Pi-3(t), Pi-3, Pi3(t), Pi5(t), Pi5-2, Pii,  RMg22, RMg21,Pi21(t)*, Pi21, RMg41, Pi-21(t), Pi21(t),Pi8, Pi-8,Pi67(t)*, Pi67, Pi67(t),Piz-5, Pi-z5, Piz5, Pi-2(t), Pi-2, Pi2,Pi is1(Rb4), Rb4, Rb-4, Piis1, Pi-is-1,Pi6(t)*, Pi6, Pi-6(t), pi6(t),Pi is2(Rb5), Rb5, Piis2, Pi-is-2, Rb-5,Pi11(t)*(Pi zh), Pi11(t)*, Pizh, Pi-zh, Pi-zh*, Pi-zh(t), Pi-11(t), Pi-11, Pi11,Pi10(t)*, Pi10, Pi-10t, Pi-10, Pi-10(t),Pi7, Pi-7(t), Pi7(t),Pi20, Pi20(t),Pi15(t), Pi15, RMg34.,Pi23(t)*, Pi23(t), Pi23, RMg43, Pi-23(t),Pi-tp(t), Pitp(t), Pi-tp,Pi24(t), Pi-24(t), Pi-24, Pi24,Piq1*, Pitq1*, Pitq1, Pi-tq1, Pitq-1,Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30, Trx30,Pi-lm2, Pilm2, Pi lm2, Pib2,Pi se2(Rb2), Rb2, Pise2, Pi-se-2, Rb-2,Pi se3(Rb3), Rb3, Pise3, Pi-se-3, Rb-3,Pitq5*, Pi-tq5, Pi-tq5, Pitq-5, Pitq5,Pi-tq6, Pitq6,Pi22(t)*, Pi22, RMg42, pi22(t), Pi-22(t),Pi13(t), Pi13(t)*, Pi13,Pi12(t), Pi12(t)*, Pi12, Pi-12(t) ,Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2,Pi13(t), Pi13(t)*, Pi13, Pi-13(t)*,Pi14(t), Pi14(t)*, Pi14,Pi14(t), Pi14(t)*, Pi14,Pi16(t), Pi16, Pi-16(t),Pi17(t), Pi17, Pi-17(t),Pi18(t)*, Pi18(t), Pi18, Pi-18(t), Pi-18,Pi19(t), Pi14, Pi19,Pi24, Pi24(t),Pi25(t), Pi-25(t),Pi25, Pi25(t),Pi28(t), Pi-28(t),Pi-29(t), Pi29(t),Pi-30(t), Pi30(t),Pi-31(t), Pi31(t)*, Pi31(t),Pi f, PIF, Pif, RMg3, Pi-f,Pi-g(t),Pi-GD-1(t), PiGD1, PiGD-1(t),Pi-GD-3(t), PiGD-3(t),Pi27(t), Pi-27(t),Pi40(t), Pi40, pi40, Pi-40(t), Pi-40,Pi27, Pi27(t), Pi-27(t),Pi34, RMg71, Pi24(t),Pi35(t),Pi39(t), Pi39,Pi39(t), Pi39,Pi44(t)*, Pi44(t), Pi44, Pi-44(t),Pi62(t)*(=Pita?), Pi62(t)*, Pi62, Pi62(t), Pi-62(t),Pi157*, Pi157(t)*, Pi-157, Pi157,Pi-GD-2(t), PiGD-2(t),Pi i2, Pii2, Pii2(t),Pi-ks, Pi-s, Pik-s, Piks,Pi kur1*, PIKUR1, Pikur1*, Pikur1, RMg9, Pi-kur 1, Pi-kur1,Pi-y1(t), Pi-y(t), Piy1(t),Pi kur2*, PIKUR2, Pikur2, Pikur2*, RMg10, Pi-kur 2, Pi-kur2,Pi-y2, Pi-y2(t), Pi-y1(t), Piy2(t), Pi-y(t),Pi26(t), Pi26,Pi-d1, Pi-d(t), Pi-d(t)1, PiD1(t), Pid1, Pid1(t),Pi i, Pii, Pi-i, Pii(t),Pigm(t), Pi-gm(t), Pigm,PiCO39(t), Pi-CO39, Pi-CO39(t), pi-CO39(t),Pi36(t), Pi36,Pi a, Pia, Pi-a, Pia-1, Pia-2,Pi33(t), RMg70, Pi-33(t), Pi-33, Pi33,Pi-d2, Pi-d(t)2, PiD2(t), Pid2, PI-D2, Pi-d2(t), SDRLK-PID2, OsSDRLK-PID2,Pi3, Pi5, Pi-3(t), Pi-3, Pi3(t), Pi5(t), Pi5-1, Pii,  RMg22, RMg21,Pi9(t), Pi9(t)*, Pi9, Pi-9(t),Pi1, Pi-1, Pi1-5C, Pi1-6C,Pik-m, Pi-m, Pi-km, Pikm, Pi m, Pikm1-TS, Pikm2-TS, Pi-km1, Pi-km2,Pi b(Pi s), Pis, Pib, Pi-s, Pi-hy,Pik-p, Pi-kp, Pikp, Pikp-1, Pikp-2,Pit, Pit(K59), Pit(Npb), Pi-t, PitNpb, PitK59, Pit1, OsPit1,Pi-kh, Pi k-h, Pi54, Pi54rh, Pi-k(h), Pik-h, Pikh,Pi26(t), Pi-26(t),Pi38, Pi-38,Pi se1(Rb1), Rb1, Pise1, RMg11, Pi-se, Pi-se-1, Pise-1, Rb-1,Pi-32(t), Pi32(t)*, Pi32(t)
33854	0	Kiyosawa S.	Inheritance of resistance of rice varieties to a Philippine fungus strain of Pyricularia oryzae	Japan. J. Breeding	19	61-73	1969	PIK,PIKS,PIM,PIKM	Pik, RMg8, Pi-k, Pik-2, Pik-1, Pik1, Pik2, Pik-H4, Pikp-1, Pikh-1, Pik1-H4, Pikh-2, Pik2-H4,Pi-ks, Pi-s, Pik-s, Piks,Pi-m, Pik-m(Pi m), Pik-m, Pi m, Pi-km,Pik-m, Pi-m, Pi-km, Pikm, Pi m, Pikm1-TS, Pikm2-TS, Pi-km1, Pi-km2
33855	0	Utami D.W., Ambarwati A.D., Apriana A., Sisharmini A., Hanarida I., Tharreau D., Santosa D.	Resistance Spectrum of Double Haploid Lines Derived from IR64 and Wild Rice Species, Oryza rufipogon Contained the Blast Resistance QTL (Pir)	Jurnal AgroBiogen	3	1-8	2007	PIR7,PIR4	Pir7,Pir4
33856	0	Jena K.K., Suh J.P., Jeung J.U., Cho Y.C., Roh J.H., Han S.S., Kim Y.G., Brar D.S.	Molecular Breeding for Durable Blast Disease Resistance in Rice	5th International Crop Science Congress proceedings		1-4	2008	PI40	Pi40(t), Pi40, pi40, Pi-40(t), Pi-40
33857	0	Li L.Y., Wang L., Jing J.X., Li Z.Q., Lin F., Huang L.F., Pan Q.H.	The Pikm gene, conferring stable resistance to isolates of Magnaporthe oryzae, was finely mapped in a crossover-cold region on rice chromosome 11	Mol Breeding	20	179-188	2007	PIK	Pik, RMg8, Pi-k, Pik-2, Pik-1, Pik1, Pik2, Pik-H4, Pikp-1, Pikh-1, Pik1-H4, Pikh-2, Pik2-H4
33859	0	Cho Y.C., Kwon S.W., Suh J.P., Kim J.J., Lee J.H., Roh J.H., Oh M.K., Kim M.K., Ahn S.N., Koh H.J., Yang S.J., Kim Y.G.	QTLs Identification and Confirmation of Field Resistance to Leaf Blast in Temperate japonica Rice (Oryza sativa L.)	J. Crop Sci. Biotech.	11	269-276	2008	PIQ1,PIZT,PI44	Piq1*, Pitq1*, Pitq1, Pi-tq1, Pitq-1,Piz-t, Pi-zt, Pi-z(t), Pi2/Pizt, Pizt, Pi9, OsPiz-t,Pi44(t)*, Pi44(t), Pi44, Pi-44(t)
33860	0	Jia Y., Moldenhauer K.	Development of Monogenic and Digenic Rice Lines for Blast Resistance Genes Pi-ta, Pi-kh/Pi-ks	Journal of Plant Registrations,	4	163-166	2010	PIK,PIKS,PIKH	Pik, RMg8, Pi-k, Pik-2, Pik-1, Pik1, Pik2, Pik-H4, Pikp-1, Pikh-1, Pik1-H4, Pikh-2, Pik2-H4,Pi-ks, Pi-s, Pik-s, Piks,Pi-kh, Pi k-h, Pi54, Pi54rh, Pi-k(h), Pik-h, Pikh
33861	0	Babujee L., Gnanamanickam S.S.	Molecular tools for characterization of rice blast pathogen (Magnaporthe grisea) population and molecular marker-assisted breeding for disease resistance	Curr. Sci.	78	248-257	2000	PI5-2,PI3	Pi3, Pi5, Pi-3(t), Pi-3, Pi3(t), Pi5(t), Pi5-2, Pii,  RMg22, RMg21,Pi3, Pi5, Pi-3(t), Pi-3, Pi3(t), Pi5(t), Pi5-1, Pii,  RMg22, RMg21
33862	0	Koide Y., Telebanco-Yanoria M.J., Pena F.D., Fukuta Y., Kobayashi N.	Characterization of Rice Blast Isolates by the Differential System and their Application for Mapping a Resistance Gene, Pi19(t)	J Phytopathol	159	85-93	2011	PI1,PI19	Pi1, Pi-1, Pi1-5C, Pi1-6C,Pi19(t), Pi14, Pi19
33863	0	Luo C.X., Hanamura H., Sezaki H., Kusaba M., Yaegashi H.	Relationship between avirulence genes of the same family in rice blast fungus Magnaporthe grisea	J. Gen. Plant Pathol.	68	300-306	2002	PIZT,PIZ	Piz-t, Pi-zt, Pi-z(t), Pi2/Pizt, Pizt, Pi9, OsPiz-t,Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2
33864	0	Mahender A., Swain D.M., Gitishree D., Subudhi H.N., Rao G.J.N.	Molecular analysis of native Manipur rice accessions for resistance against blast	Afr. J. Biotechnol.	11	1321-1329	2012	PI40,PIZT,PIZ	Pi40(t), Pi40, pi40, Pi-40(t), Pi-40,Piz-t, Pi-zt, Pi-z(t), Pi2/Pizt, Pizt, Pi9, OsPiz-t,Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2
33865	0	Zhou J.H., Wang J.L., Xu J.C., Klei C.L., Ling Z.Z.	Identification and mapping of a rice blast resistance gene Pi-g(t) in the cultivar Guangchangzhan	Plant Pathol.	53	191-196	2004	PIG,PIB,PI25,PITQ5,PI16	Pi-g(t),Pi b(Pi s), Pis, Pib, Pi-s, Pi-hy,Pi25(t), Pi-25(t),Pitq5*, Pi-tq5, Pi-tq5, Pitq-5, Pitq5,Pi16(t), Pi16, Pi-16(t)
33866	0	Yokoo M., Kiyosawa S.	Inheritance of blast resistance of the rice variety, Toride 1, selected from the cross Norin 8 x TKM.1	Japan. J. Breed.	20	129-132	1970	PIZT,PIZ	Piz-t, Pi-zt, Pi-z(t), Pi2/Pizt, Pizt, Pi9, OsPiz-t,Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2
33867	0	Jia Y., Lee F.N., McClung A.	Determination of Resistance Spectra of the Pi-ta and Pi-k Genes to U.S. Races of Magnaporthe oryzae Causing Rice Blast in a Recombinant Inbred Line Population	Plant Dis.	93	639-644	2009	PIKH,PIK,PITA,PI39	Pi-kh, Pi k-h, Pi54, Pi54rh, Pi-k(h), Pik-h, Pikh,Pik, RMg8, Pi-k, Pik-2, Pik-1, Pik1, Pik2, Pik-H4, Pikp-1, Pikh-1, Pik1-H4, Pikh-2, Pik2-H4,Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30, Trx30,Pi39(t), Pi39
33868	0	Narayanan N.N., Baisakh N., Oliva N.P., Vera Cruz C.M., Gnanamanickam S.S., Datta K., Datta S.K.	Molecular breeding: marker-assisted selection combined with biolistic transformation for blast and bacterial blight resistance in Indica rice (cv. CO39)	Molecular Breeding	14	61-71	2004	PIZ5	Piz-5, Pi-z5, Piz5, Pi-2(t), Pi-2, Pi2
33869	0	Berruyer R., Adreit H., Milazzo J., Tharreau D., Dioh W., B?hnert H.U., Zhu L., Price A., Notteghem J.L.	Characterization of Pi33, a resistance gene in rice interacting with Magnaporthe grisea avirulence gene ACE1	IRRN	27	11-12	2002	PI33	Pi33(t), RMg70, Pi-33(t), Pi-33, Pi33
33870	0	Utami D.W., Moeljopawiro S., Aswidinnoor H., Setiawan A., Hanarida D.I.	Gen Pengendali Sifat Ketahanan Penyakit Blas (Pyricularia grisea Sacc.) pada Spesies Padi Liar Oryza rufipogon Griff. dan Padi Budi Daya IR64	Jurnal AgroBiogen	1	1-6	2005	PIR9-2,PIR2-3,PIR12-2,PIRF2-1	Pir9-2, Pir9-2(t),Pir2-3, Pir2-3(t),Pir12-2, Pir12-2(t),Pirf2-1, Pirf2-1(t)
33871	0	Namai T., Ohba A., Sugahara S., Togashi J.	True resistance genes harbored by rice cultivars on pathogenic variation of rice blast fungus re-isolated from panicles of resistance rice cultivars	Ann. Phytopathol. Soc. Jpn.	65	67-75	1999	PIZT,PIZ	Piz-t, Pi-zt, Pi-z(t), Pi2/Pizt, Pizt, Pi9, OsPiz-t,Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2
33872	0	Xiao W., Yang Q., Wang H., Duan J., Guo T., Liu Y., Zhu X., Chen Z.	Identification and fine mapping of a major R gene to Magnaporthe oryzae in a broad-spectrum resistant germplasm in rice	Mol Breeding (Published online)	28	303-312	2011	PIZ,PI40,PI9,PI51	Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2,Pi40(t), Pi40, pi40, Pi-40(t), Pi-40,Pi9(t), Pi9(t)*, Pi9, Pi-9(t),Pi51(t)
33873	0	Ahn S.N., Kim Y.K., Hong H.C., Han S.S., Kwon S.J., Choi H.C., Moon H.P., McCouch S.R.	Molecular mapping of a new gene for resistance to rice blast (Pyricularia grisea Sacc.)	Euphytica	116	17-22	2000	PI22,PI21,PI18	Pi22(t)*, Pi22, RMg42, pi22(t), Pi-22(t),Pi21(t)*, Pi21, RMg41, Pi-21(t), Pi21(t),Pi18(t)*, Pi18(t), Pi18, Pi-18(t), Pi-18
33874	0	Kiyosawa S.	Inheritance of blast-resistance in some Chinese rice varieties and their derivatives	Japan. J. Breeding	18	193-205	1968	PIK,PIM,PIA,PIKM	Pik, RMg8, Pi-k, Pik-2, Pik-1, Pik1, Pik2, Pik-H4, Pikp-1, Pikh-1, Pik1-H4, Pikh-2, Pik2-H4,Pi-m, Pik-m(Pi m), Pik-m, Pi m, Pi-km,Pi a, Pia, Pi-a, Pia-1, Pia-2,Pik-m, Pi-m, Pi-km, Pikm, Pi m, Pikm1-TS, Pikm2-TS, Pi-km1, Pi-km2
33875	0	Wen S., Gao B.	Introgressing Blast Resistant Gene Pi-9(t) into Elite Rice Restorer Luhui17 by Marker-Assisted Selection	Rice Genomics and Genetics	2	31-36	2011	PI9	Pi9(t), Pi9(t)*, Pi9, Pi-9(t)
33877	0	Rathour R., Chopra M., Sharma T.R.	Development and validation of microsatellite markers linked to the rice blast resistance gene Pi-z of Fukunishiki and Zenith	Euphytica	163	275-282	2008	PIZT,PIZ	Piz-t, Pi-zt, Pi-z(t), Pi2/Pizt, Pizt, Pi9, OsPiz-t,Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2
33878	0	Lee S., Wamishe Y., Jia Y., Liu G., Jia M.H.	Identification of two major resistance genes against race IE-1k of Magnaporthe oryzae in the indica rice cultivar Zhe733	Mol Breeding	24	127-134	2009	PI1,PI43,PI42	Pi1, Pi-1, Pi1-5C, Pi1-6C,Pi43, Pi43(t), Pi-43(t),Pi42(t), Pi-42(t), Pi42
33879	0	Zenbayashi-Sawata K., Ashizawa T.	Mapping of the Pi34 conferring partial resistance to rice blast on the physical map	The phytopathological Society of Japan	70	193-194	2004	PI34	Pi34, RMg71, Pi24(t)
33880	20879839	Zheng Y., Zheng W., Lin F., Zhang Y., Yi Y., Wang B., Lu G., Wang Z., Wu W.	AVR1-CO39 Is a Predominant Locus Governing the Broad Avirulence of Magnaporthe oryzae 2539 on Cultivated Rice (Oryza sativa L.)	MPMI	24	13-17	2011	PICO39	PiCO39(t), Pi-CO39, Pi-CO39(t), pi-CO39(t)
33881	0	Ysuda N., Zenbayashi K., Fujita K.	Identification of an avirulence gene in Magnaporthe oryzae which controls avirulence to the resistance rice cultivar 'Hokkai188'	The phytopathological Society of Japan	74	191-191	2008	PI35	Pi35(t)
33882	18943271	Chen H., Wang S., Zhang Q.	New gene for bacterial blight resistance in rice located on chromosome 12 identified from Minghui 63, an elite restorer line	Phytopathology	92(7)	750-754	2002	SWEET13	OsSWEET13, Xa25(t), Xa25, OsMtN3, Xa25/SWEET13, OsSWEET13/XA25
33883	0	Sabouri H., Sabouri A., Jafarzadeh M.R., Mollashahi M.	Detection of QTLs controlling field blast resistance in rice (Oryza sative L.)	Plant Omics Journal	4	1-5	2011		
33884	0	Jia Y., Wang Z., Singh P.	Development of Dominant Rice Blast Pi-ta Resistance Gene Markers	Crop Sci.	42	2145-2149	2002	PITA	Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30, Trx30
33885	0	Kim D.M., Ju H.G., Ahn S.N.	Fine mapping of quantitative trait loci conferring blast field resistance in an advanced backcross population between Japonica cultivars in rice	3rd International Rice Congress proceedings		57-57	2010		
33886	0	Zhou B., Wang G.L.	Functional and Evolutionary Analysis of the Pi2/9 Locus in Rice	Advances in Genetics, Genomics and Control of Rice Blast		127-135	2009	PIGM,PI40,PIZ,PI9	Pigm(t), Pi-gm(t), Pigm,Pi40(t), Pi40, pi40, Pi-40(t), Pi-40,Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2,Pi9(t), Pi9(t)*, Pi9, Pi-9(t)
33887	0	Loan L.C., Du P.V., Li Z.	Identification of genes conffering resistance to some Philippine and Vietnamese races of blast	Omonrice	11	49-62	2003		
33889	0	Koga H., Kobayashi T.	Early infection process of Pyricularia oryzae Cav. in rice leaves of compatible and incompatible combinations	Ann. Phytopath. Soc. Japan	48	506-513	1982	PIZT,PIZ	Piz-t, Pi-zt, Pi-z(t), Pi2/Pizt, Pizt, Pi9, OsPiz-t,Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2
33890	0	Yokoo M., Kikuchi F., Fujimaki H., Nagai K.	Breeding of blast resistance lines (BL1 to 7) from Indica-Japonica crosses of rice	Japan. J. Breed.	28	359-385	1978	PIB	Pi b(Pi s), Pis, Pib, Pi-s, Pi-hy
33891	0	Kiyosawa S., Orimoto Y., Iida S.	Relationship between frequencies of resistance gene in the host and corresponding virulence gene in the pathogen in rice blast disease	Japan. J. Breeding	34	322-334	1984	PITA	Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30, Trx30
33892	0	Kiyosawa S., Murty V.V.S.	The inheritance of blast-resistance in indian rice variety, HR-22	Japan. J. Breeding	19	269-276	1969	PIKH,PIK,PIKS	Pi-kh, Pi k-h, Pi54, Pi54rh, Pi-k(h), Pik-h, Pikh,Pik, RMg8, Pi-k, Pik-2, Pik-1, Pik1, Pik2, Pik-H4, Pikp-1, Pikh-1, Pik1-H4, Pikh-2, Pik2-H4,Pi-ks, Pi-s, Pik-s, Piks
33893	0	Kiyosawa S.	Gene Analysis of Blast Resistance in Exotic Varieties of Rice	JARQ	6	8-15	1971	PIK,PIKH,PIKS	Pik, RMg8, Pi-k, Pik-2, Pik-1, Pik1, Pik2, Pik-H4, Pikp-1, Pikh-1, Pik1-H4, Pikh-2, Pik2-H4,Pi-kh, Pi k-h, Pi54, Pi54rh, Pi-k(h), Pik-h, Pikh,Pi-ks, Pi-s, Pik-s, Piks
33894	0	Zhao K., Wright M., Kimball J., Eizenga G., McClung A., Kovach M., Tyagi W., Ali M.L., Tung C.W., Reynolds A., Bustamante C.D., McCouch S.R.	Genomic Diversity and Introgression in O. sativa Reveal the Impact of Domestication and Breeding on the Rice Genome	PLoS ONE	5	e10780-e10780	2010		
33895	0	Utami D.W., Moeljopawiro S., Hanarida I., Tharreau D.	Fine mapping of rice blast QTL from Oryza rufipogon and IR64 by SNP markers	Sabrao Journal of Breeding and Genetics	40	105-115	2008	PIR7,PIR4	Pir7,Pir4
33896	0	Narayanan N.N., Baisakh N., Vera Cruz C.M., Gnanamanickam S.S., Datta K., Datta S.K.	Molecular Breeding for the Development of Blast and Bacterial Blight Resistance in Rice cv. IR50	Crop Sci.	42	2072-2079	2002	PIZ5	Piz-5, Pi-z5, Piz5, Pi-2(t), Pi-2, Pi2
33897	0	Akhtar S., Bhat M.A., Wani S.A., Bhat K.A., Chalkoo, Mir M.R., Wani S.A.	Marker assisted selection in rice	Journal of Phytology	2	66-81	2010	PI42	Pi42(t), Pi-42(t)
33899	0	Jiang H., Feng Y., Bao L., Li X., Gao G., Zhang Q., Xiao J., Xu C., He Y.	Improving blast resistance of Jin 23B and its hybrid rice by marker-assisted gene pyramiding	Mol Breeding (Published online)	30	1679-1688	2012	PI1	Pi1, Pi-1, Pi1-5C, Pi1-6C
33900	0	Jichen X., Jiulin W., Zhongzhuan L., Lihuang Z.	Analysis of rice blast resistance genes by QTL mapping	Chinese Science Bulletin	49	337-342	2004		
33902	0	Yasuda N., Noguchi M.T., Fujita Y.	Induced Rice Resistance to Blast Varies as a Function of Magnaporthe grisea Avirulence Genes	Plant Dis.	92	1144-1149	2008		
33903	0	Kiyosawa S.	Inheritance of blast-resistance in West Pakistani rice variety, Pusur	Japan. J. Breeding	19	121-128	1969	PIK,PIKP	Pik, RMg8, Pi-k, Pik-2, Pik-1, Pik1, Pik2, Pik-H4, Pikp-1, Pikh-1, Pik1-H4, Pikh-2, Pik2-H4,Pik-p, Pi-kp, Pikp, Pikp-1, Pikp-2
33904	0	Zenbayashi-Sawata K., Ashizawa T., Koizumi S.	Identification of the avirulence gene AVR-Pi34 in Magnaporthe grisea associated with the partial resistance gene Pi34 to rice blast	The phytopathological Society of Japan	71	196-196	2004	PI34	Pi34, RMg71, Pi24(t)
33906	0	Telebanco-Yanoria M.J., Imbe T., Kato H., Tsunematsu H., Ebron L.A., Vera Cruz C.M., Kobayashi N., Fukuta Y.	A Set of Standard Differential Blast Isolates (Magnaporthe grisea (Hebert) Barr.) from the Philippines for Rice (Oryza sativa L.) Resistance	JARQ	42	23-34	2008		
33907	0	Marchetti M.A., Lai X., Bollich C.N.	Inheritance of resistance to Pyricularia oryzae in rice cultivars grown in the United States	Phytopathology	77	799-804	1987	PIKH,PIKS	Pi-kh, Pi k-h, Pi54, Pi54rh, Pi-k(h), Pik-h, Pikh,Pi-ks, Pi-s, Pik-s, Piks
33908	0	Kiyosawa S., Yasuda H., Shintani I., Koide H., Morimoto T.	Blast nursery tests for field resistance of rice varieties with different genotypes for true resistance to blast	Ann. Phytopath. Soc. Japan	43	517-523	1977	PIZ	Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2
33909	0	RoyChowdhury M., Jia Y., Jackson A., Jia M.H., Fjellstrom R., Cartwright R.D.	Analysis of rice blast resistance gene Pi-z in rice germplasm using pathogenicity assays and DNA markers	Euphytica	184	35-46	2012	PIZ	Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2
33910	0	Hanamura H., Sezaki H., Yasuda N., Fujita Y., Kusaba M., Yaegashi H.	Genetic analysis of avirulence genes in blast fungus to rice blast resistance genes Piz and Piz-t	Jpn. J. Phytopathol.	67	181-181	2001	PIZT,PIZ	Piz-t, Pi-zt, Pi-z(t), Pi2/Pizt, Pizt, Pi9, OsPiz-t,Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2
33911	0	Liu Y., Zhu X.Y., Zhang S., Leach J., Liu B., Leung H.	NBS-LRR gene clusters contributing to durable resistance to Magnaporthe oryzae in rice variety SHZ-2	6th International Rice Genetics Symposium		110-110	2009	PI56	Pi56, qBR9.1, Pi56(t)
33912	0	Saka N., Terashima T., Kudo S., Kato T., Sugiura K., Endo I., Shirota M., Inoue M., Otake T.	A New High Field Resistant Variety Mine-haruka for Rice Blast	Res.Bull.Aichi Agric.Res.Ctr.	39	95-109	2007	PI39	Pi39(t), Pi39
33913	0	Pan Q., Wang L., Tanisaka T., Ikehashi H.	Allelism of rice blast resistance genes in two chinese rice cultivars, and identification of two new resistance genes	Plant Pathol.	47	165-170	1998	PIK,PI15,PII	Pik, RMg8, Pi-k, Pik-2, Pik-1, Pik1, Pik2, Pik-H4, Pikp-1, Pikh-1, Pik1-H4, Pikh-2, Pik2-H4,Pi15(t), Pi15, RMg34.,Pi i, Pii, Pi-i, Pii(t)
33914	0	Saka N., Fukuoka S., Terashima T., Kudo S., Shirota M., Ando I., Sugiura K., Sato H., Maeda H., Endo I., Kato H., Inoue M.	Breeding of A New Rice Variety Chubu 125 with High Field Resistance for Blast and Excellent Eating Quality	Res.Bull.Aichi Agric.Res.Ctr.	42	171-183	2010		
33915	0	Mithrasena Y.J.P.K., Wijesundera W.S.S., Wijesundera R.L.C., Wimalasiri D.C., Priyanthi R.P.N.	Pathogenic and Genetic Diversity of Magneporthe oryzae Populations from Sri Lanka	Rice Science	19	241-246	2012	PITA,PIKH,PIZ5,PIT,PISH,PI9	Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30, Trx30,Pi-kh, Pi k-h, Pi54, Pi54rh, Pi-k(h), Pik-h, Pikh,Piz-5, Pi-z5, Piz5, Pi-2(t), Pi-2, Pi2,Pit, Pit(K59), Pit(Npb), Pi-t, PitNpb, PitK59, Pit1, OsPit1,Pi sh, Pish, Pi-sh, Pish(t),Pi9(t), Pi9(t)*, Pi9, Pi-9(t)
33916	0	Yokoo M.	Introduction of Piz-t and Pib Genes for Blast Disease Resistance from Indica Varieties and their Utilization for Genetic Researches in Rice	JARQ	39	239-245	2005	PIZT,PIZ,PIB	Piz-t, Pi-zt, Pi-z(t), Pi2/Pizt, Pizt, Pi9, OsPiz-t,Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2,Pi b(Pi s), Pis, Pib, Pi-s, Pi-hy
33917	0	Yokoo M., Fujimaki H.	Tight linkage of blast-resistance with maturity observed in different Indica varieties of rice	Japan. J. Breed.	21	35-39	1971	PIZT	Piz-t, Pi-zt, Pi-z(t), Pi2/Pizt, Pizt, Pi9, OsPiz-t
33918	0	Zenbayashi-Sawata K., Katagiri K., Fujisawa M., Matsumoto T., Fukuoka S.	Physical mapping of the partial resistance gene Pi34 to rice blast and annotation analysis of the candidate genes	The phytopathological Society of Japan	72	223-223	2006	PI34	Pi34, RMg71, Pi24(t)
33919	0	Normile D.	New Strategy Promises Lasting Resistance to a Rice Plague	Science	325	925-925	2009		
33920	0	Cho Y.C., Jeung J.U., Park H.J., Yang C.I., Choi Y.H., Choi I.B., Won Y.J., Yang S.J., Kim Y.G.	Haplotype Diversity and Durability of Resistance Genes to Blast in Korean Japonica Rice Varieties	J. Crop Sci. Biotech.	11	205-214	2008		
33921	0	Hashimoto N., Daigen M., Hayashi K., Ashikawa I., Takahara Y., Yamamoto K.	Use of DNA markers closely linked to a blast resistance gene, Piz, in rice (Oryza sativa L.) breeding	Breeding Research	7	143-146	2005	PIZ	Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2
33922	0	Amante-Bordeos A., Sitch L.A., Nelson R., Dalmacio R.D., Oliva N.P., Aswidinnoor H., Leung H.	Transfer of bacterial blight and blast resistance from the tetraploid wild rice Oryza minuta to cultivated rice, Oryza sativa	Theor. Appl. Genet.	84	345-354	1992	PI9	Pi9(t), Pi9(t)*, Pi9, Pi-9(t)
33923	0	Wang Z., Jia Y., Rutger J.N., Xia Y.	Rapid survey for presence of a blast resistance gene Pi-ta in rice cultivars using the dominant DNA markers derived from portions of the Pi-ta gene	Plant Breeding	126	36-42	2007	PITA	Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30, Trx30
33924	0	Pan Q.H., Wang L., Ikehashi H., Yamagata H., Tanisaka T.	Identification of two new genes conferring resistance to rice blast in the Chinese native cultivar 'Maowangu'	Plant Breeditig	117	27-31	1998	PI14,PI13	Pi14(t), Pi14(t)*, Pi14,Pi13(t), Pi13(t)*, Pi13
33925	0	Kiyosawa S., Yasuda H., Shintani I.	Field test for field resistance of rice varieties with different genotypes for true resistance to blast	Ann. Phytopath. Soc. Japan	43	508-516	1977	PIZ	Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2
33926	0	Xu C., Li Z., Xu S.	Joint Mapping of Quantitative Trait Loci for Multiple Binary Characters	Genetics	169	1045-1059	2005	PITQ6,PITQ5,PILM2	Pi-tq6, Pitq6,Pitq5*, Pi-tq5, Pi-tq5, Pitq-5, Pitq5,Pi-lm2, Pilm2, Pi lm2, Pib2
33927	0	Shi X., Wang J., Bao Y., Li P., Xie L., Huang J., Zhang H.	Identification of the quantitative trait loci in Japonica rice landrace Heikezijing responsible for broad-spectrum resitance to rice blast	Phytopathology	100	822-829	2010		
33928	0	Zenbayashi K., Ashizawa T., Koizumi S.	Mapping of the Pi24(t) conferring partial resistance to rice blast in the rice cultivar Chubu 32	The phytopathological Society of Japan	68	178-178	2002	PI34	Pi34, RMg71, Pi24(t)
33929	0	Wang Z.H.	Marker-assisted selection molecular mapping and cloning of the rice blast resistance genes	Chinese Bulletin of Life Sciences	17	183-188	2005		
33930	0	Rahim H.A., Bhuiyan M.A.R., Lim L.S., Sabu K.K., Saad A., Azhar M., Wickneswari R.	Identification of quantitative trait loci for blast resistance in BC2F3 and BC2F5 advanced backcross families of rice	Genetics and Molecular Research	11	3277-3289	2012	PIR2-3,PIRF2-1	Pir2-3, Pir2-3(t),Pirf2-1, Pirf2-1(t)
33931	0	Kito H., Zenbayashi-Sawata K., Koizumi S., Nakajima T.	Responses of a near isogenic line with the field resistance gene Pi34 to rice blast	The phytopathological Society of Japan	74	191-192	2008	PI34	Pi34, RMg71, Pi24(t)
33932	0	Kobayashi N., Telebanco-Yanoria M.J., Tsunematsu H., Kato H., Imbe T., Fukuta Y.	Development of New Sets of International Standard Differential Varieties for Blast Resistance in Rice (Oryza sativa L.)	JARQ	41	31-37	2007	PIZT,PIZ,PIZ5	Piz-t, Pi-zt, Pi-z(t), Pi2/Pizt, Pizt, Pi9, OsPiz-t,Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2,Piz-5, Pi-z5, Piz5, Pi-2(t), Pi-2, Pi2
33935	0	Cho Y.C., Kwon S.W., Choi I.S., Lee S.K., Jeon J.S., Oh M.K., Roh J.H., Hwang H.G., Yang S.J., Kim Y.G.	Identification of Major Blast Resistance Genes in Korean Rice Varieties (Oryza sativa L.) Using Molecular Markers	J. Crop Sci. Biotech.	10	265-276	2007	PIK,PIA,PI3,PITA,PI5-2,PIT,PIZ,PIZ5,PII,PIB	Pik, RMg8, Pi-k, Pik-2, Pik-1, Pik1, Pik2, Pik-H4, Pikp-1, Pikh-1, Pik1-H4, Pikh-2, Pik2-H4,Pi a, Pia, Pi-a, Pia-1, Pia-2,Pi3, Pi5, Pi-3(t), Pi-3, Pi3(t), Pi5(t), Pi5-1, Pii,  RMg22, RMg21,Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30, Trx30,Pi3, Pi5, Pi-3(t), Pi-3, Pi3(t), Pi5(t), Pi5-2, Pii,  RMg22, RMg21,Pit, Pit(K59), Pit(Npb), Pi-t, PitNpb, PitK59, Pit1, OsPit1,Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2,Piz-5, Pi-z5, Piz5, Pi-2(t), Pi-2, Pi2,Pi i, Pii, Pi-i, Pii(t),Pi b(Pi s), Pis, Pib, Pi-s, Pi-hy
33936	0	Kito H., Zenbayashi-Sawata K., Koizumi S., Nakajima T.	Control Effects of the Field Resistance Gene on Infection with Rice Blast Disease	Ann, Rept. Plant Prot. North Japan	60	25-29	2009	PI34	Pi34, RMg71, Pi24(t)
33937	0	Fukuta Y.	Blast Research Network for Stable Rice Production under Unfavorable Environment Condition	5th International Crop Science Congress proceedings		-	2008		
33938	0	Yoshida K., Saitoh H., Fujisawa S., Kanzaki H., Matsumura H., Yoshida K., Tosa Y., Chuma I., Takano Y., Win J., Kamoun S., Terauchi R.	Association Genetics Reveals Three Novel Avirulence Genes from the Rice Blast Fungal Pathogen Magnaporthe oryzae	Plant Cell	21	1573-1591	2009	PIKP	Pik-p, Pi-kp, Pikp, Pikp-1, Pikp-2
33939	0	Utami D.W., Barnita K., Yuriah S., Hanarida I.	Nucleotide Base Variation of Blast Disease Resistance Gene Pi33 in Rice Selected Broad Genetic Background	J. Biosci.	18	123-128	2011	PIR4,PIR7,PI33	Pir4,Pir7,Pi33(t), RMg70, Pi-33(t), Pi-33, Pi33
33940	0	Sharma T.R., Rai A.K., Gupta S.K., Vijayan J., Devanna B.N., Ray S.	Rice Blast Management Through Host-Plant Resistance: Retrospect and Prospects	Agric Res	1	37-52	2012	PI5-2,PI38,PI44,PIKS,PI18,PI21,PI20,PI31,PI47,PI48,PI32,PI34,PI39,PI62,PI41,PI42,PI6,PI157,PI12,PIKM,PIG,PILM2,PITQ6,PIGD2,PIGD3,PIGM,PIGD1,PICO39,PITA,PIK,PIZ,PB1,PI3,PI16,PI22,PITQ5,PI,PIKG,MPI,PIZH,PI8,PI10,PI26,PI40,PI19,PI17,PI26,PI28,PI27,PI29,PIIS1,PI15,PI13,PI39,PII2,PIF,PIKUR2,PISE1,PID1,PIKP,PIKUR1,PITP,PIY2,PI27,PI33,PI67,PI14,PIIS2,PII,PI36,PIY1,PI21,PID2,PIT,PI37,PI1,PISH,PI9,PI12,PIQ1,PIKH,PI23,PI35,PBR*	Pi3, Pi5, Pi-3(t), Pi-3, Pi3(t), Pi5(t), Pi5-2, Pii,  RMg22, RMg21,Pi38, Pi-38,Pi44(t)*, Pi44(t), Pi44, Pi-44(t),Pi-ks, Pi-s, Pik-s, Piks,Pi18(t)*, Pi18(t), Pi18, Pi-18(t), Pi-18,Pi21(t)*, Pi21, RMg41, Pi-21(t), Pi21(t),Pi20, Pi20(t),Pi-31(t), Pi31(t)*, Pi31(t),Pi47, Pi47(t),Pi48, Pi48(t),Pi-32(t), Pi32(t)*, Pi32(t),Pi34, RMg71, Pi24(t),Pi39(t), Pi39,Pi62(t)*(=Pita?), Pi62(t)*, Pi62, Pi62(t), Pi-62(t),Pi41(t), Pi41,Pi42(t), Pi-42(t),Pi6(t)*, Pi6, Pi-6(t), pi6(t),Pi157*, Pi157(t)*, Pi-157, Pi157,Pi12(t), Pi12(t)*, Pi12, Pi-12(t) ,Pik-m, Pi-m, Pi-km, Pikm, Pi m, Pikm1-TS, Pikm2-TS, Pi-km1, Pi-km2,Pi-g(t),Pi-lm2, Pilm2, Pi lm2, Pib2,Pi-tq6, Pitq6,Pi-GD-2(t), PiGD-2(t),Pi-GD-3(t), PiGD-3(t),Pigm(t), Pi-gm(t), Pigm,Pi-GD-1(t), PiGD1, PiGD-1(t),PiCO39(t), Pi-CO39, Pi-CO39(t), pi-CO39(t),Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30, Trx30,Pik, RMg8, Pi-k, Pik-2, Pik-1, Pik1, Pik2, Pik-H4, Pikp-1, Pikh-1, Pik1-H4, Pikh-2, Pik2-H4,Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2,Pb1, Pbst, RMG58.,Pi3, Pi5, Pi-3(t), Pi-3, Pi3(t), Pi5(t), Pi5-1, Pii,  RMg22, RMg21,Pi16(t), Pi16, Pi-16(t),Pi22(t)*, Pi22, RMg42, pi22(t), Pi-22(t),Pitq5*, Pi-tq5, Pi-tq5, Pitq-5, Pitq5,Pi(t)*, Pi(t),Pikg, Pik-g,MPi z(Rb6), Rb6, MPiz,Pizh,Pi8, Pi-8,Pi10(t)*, Pi10, Pi-10t, Pi-10, Pi-10(t),Pi26(t), Pi26,Pi40(t), Pi40, pi40, Pi-40(t), Pi-40,Pi19(t), Pi14, Pi19,Pi17(t), Pi17, Pi-17(t),Pi26(t), Pi-26(t),Pi28(t), Pi-28(t),Pi27(t), Pi-27(t),Pi-29(t), Pi29(t),Pi is1(Rb4), Rb4, Rb-4, Piis1, Pi-is-1,Pi15(t), Pi15, RMg34.,Pi13(t), Pi13(t)*, Pi13,Pi39(t), Pi39,Pi i2, Pii2, Pii2(t),Pi f, PIF, Pif, RMg3, Pi-f,Pi kur2*, PIKUR2, Pikur2, Pikur2*, RMg10, Pi-kur 2, Pi-kur2,Pi se1(Rb1), Rb1, Pise1, RMg11, Pi-se, Pi-se-1, Pise-1, Rb-1,Pi-d1, Pi-d(t), Pi-d(t)1, PiD1(t), Pid1, Pid1(t),Pik-p, Pi-kp, Pikp, Pikp-1, Pikp-2,Pi kur1*, PIKUR1, Pikur1*, Pikur1, RMg9, Pi-kur 1, Pi-kur1,Pi-tp(t), Pitp(t), Pi-tp,Pi-y2, Pi-y2(t), Pi-y1(t), Piy2(t), Pi-y(t),Pi27, Pi27(t), Pi-27(t),Pi33(t), RMg70, Pi-33(t), Pi-33, Pi33,Pi67(t)*, Pi67, Pi67(t),Pi14(t), Pi14(t)*, Pi14,Pi is2(Rb5), Rb5, Piis2, Pi-is-2, Rb-5,Pi i, Pii, Pi-i, Pii(t),Pi36(t), Pi36,Pi-y1(t), Pi-y(t), Piy1(t),pi21, rMg40, OsHMP26, HMP26, OsHIPP5, HIPP5, OsaHIP05, HIP05 ,Pi-d2, Pi-d(t)2, PiD2(t), Pid2, PI-D2, Pi-d2(t), SDRLK-PID2, OsSDRLK-PID2,Pit, Pit(K59), Pit(Npb), Pi-t, PitNpb, PitK59, Pit1, OsPit1,Pi37(t), Pi37,Pi1, Pi-1, Pi1-5C, Pi1-6C,Pi sh, Pish, Pi-sh, Pish(t),Pi9(t), Pi9(t)*, Pi9, Pi-9(t),Pi12(t), Pi12(t)*, Pi12, Pi-12(t),Piq1*, Pitq1*, Pitq1, Pi-tq1, Pitq-1,Pi-kh, Pi k-h, Pi54, Pi54rh, Pi-k(h), Pik-h, Pikh,Pi23(t)*, Pi23(t), Pi23, RMg43, Pi-23(t),Pi35(t),PBR*
33941	0	Tsunematsu H., Yanoria M.J.T., Ebron L.A., Hayashi N., Ando I., Kato H., Imbe T., Khush G.S.	Development of monogenic lines of rice for blast resistance	Breed. Sci.	50	229-234	2000	PI19	Pi19(t), Pi14, Pi19
33942	0	Jena K.K.	The species of the genus Oryza and transfer of useful genes from wild species into cultivated rice, O. sativa	Breed. Sci.	60	518-523	2010		
33943	0	Kiyosawa S.	Studieis on inheritance of resistance of rice varieties to blast 3. Inheritance of resistance of a rice variety Pi No.1 to the blast fungus	Japan. J. Breeding	16	243-250	1996	PITA	Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30, Trx30
33944	0	Odjo T., Ahohuendo B.C., Onasanya A., Akator K., S?r?	Analysis of Magnaporthe oryzae population structure in Benin	Afr J Agric Res	6	6183-6188	2011	PI1	Pi1, Pi-1, Pi1-5C, Pi1-6C
33945	0	Hua L., Wu J., Chen C., Wu W., He X., Lin F., Wang Li., Ashikawa I., Matsumoto T., Wang L., Pan Q.	The isolation of Pi1, an allele at the Pik locus which confers broad spectrum resistance to rice blast	Theor Appl Genet (Published online)	125	1047-1055	2012	PI1,PIK	Pi1, Pi-1, Pi1-5C, Pi1-6C,Pik, RMg8, Pi-k, Pik-2, Pik-1, Pik1, Pik2, Pik-H4, Pikp-1, Pikh-1, Pik1-H4, Pikh-2, Pik2-H4
33946	0	Deng Y., Zhu X., Xu J., Chen H., He Z.	Map-Based Cloning and Breeding Application of a Broad-Spectrum Resistance Gene Pigm to Rice Blast	Advances in Genetics, Genomics and Control of Rice Blast Disease		161-171	2009	PIGM	Pigm(t), Pi-gm(t), Pigm
33947	0	Pan Q.H., Wang L., Tanisaka T.	A new blast resistance gene identified in the Indian native rice cultivar Aus373 through allelism and linkage tests	Plant Pathol.	48	288-293	1999	PI16	Pi16(t), Pi16, Pi-16(t)
33949	0	Namai T., Fukushima R., Ishibashi Y., Ohba A., Togashi J.	Variation in pathogenicity of incompatible races of rice blast fungus, Pyricularia oryzae Cavara on panicles of newly developed rice cvs. Haenuki and Domannnaka	Ann. Phytopathol. Soc. Jpn.	63	37-43	1997	PIZ	Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2
33951	0	Utami D.W., Moeljopawiro S., Aswidinnoor H., Setiawan A., Guhardja E.	QTL analysis of blast resistance trait in interspecific population between IR64 and Oryza rufipogon	Jurnal Bioteknologi Pertanian	10	7-14	2005	PIR9-2,PIR2-3,PIR12-2,PIRF2-1	Pir9-2, Pir9-2(t),Pir2-3, Pir2-3(t),Pir12-2, Pir12-2(t),Pirf2-1, Pirf2-1(t)
33952	0	Zenbayshi-Sawata K., Ashizawa T., Koizumi S.	Mapping of the Pi24(t) conferring partial resistance to rice blast using large number of F3 population	The phytopathological Society of Japan	69	234-234		PI34	Pi34, RMg71, Pi24(t)
33954	0	Silue D., Notteghem J.L., Tharreau D.	Evidence of a gene-for-gene relationship in the Oryza sativa-Magnaporthe grisea pathosystem	Phytopathology	82	577-580	1992		
33956	0	Ahn S.N., Kim Y.K., Hong H.C., Han S.S., Choi H.C., Moon H.P., McCouch S.R.	Molecular mapping of genes for resistance to a Korean isolates of rice blast	8th SABRAO Congress and Annual Meeting of Korean Breed. Soc. Proceedings		435-436	1997	PI18	Pi18(t)*, Pi18(t), Pi18, Pi-18(t), Pi-18
33957	0	Lopez-Gerena J., Tohme J., Correa-Victoria F.J., Martinez C.P., Hulbert S., Zeigler R.	Mapping QTL's and candidate genes associated with durable resistance to rice blast	CIAT poster			2007		
33959	0	Huang D.Y.	Characterization and Mapping of Rice Blast Resistance Genes	PhD thesis Chinese Academy of Agricultural Sciences			2005	PIY2,PIX,PIY1	Pi-y2, Pi-y2(t), Pi-y1(t), Piy2(t), Pi-y(t),Pi-x(t), Pi-x1,Pi-y1(t), Pi-y(t), Piy1(t)
33960	21781278	Li Y., Xia Q., Kou H., Wang D., Lin X., Wu Y., Xu C., Xing S., Liu B.	Induced Pib Expression and Resistance to Magnaporthe grisea are Compromised by Cytosine Demethylation at Critical Promoter Regions in Rice.	J Integr Plant Biol	53(10)	814-823	2011	PIB	Pi b(Pi s), Pis, Pib, Pi-s, Pi-hy
33961	22058403	Gupta S.K., Rai A.K., Kanwar S.S., Chand D., Singh N.K., Sharma T.R.	The single functional blast resistance gene Pi54 activates a complex defence mechanism in rice.	J. Exp. Bot.	63(2)	757-72	2012	_,PITA,PIZ,_,POXN,LAC11,LOX11,WRKY102,RPBF,PI36,PIKH,PIZT,PI21	OsPAL02, PAL02, OsPAL5, PAL5, OsPAL2. PAL2, OsPAL1,Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30, Trx30,Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2,,poxN, prx38, prxRPN, RPN, poxN/PRX38, Osprx38, OsPOXN,Lac, OsLAC11, LAC10, OsLAC10,OsLOX11, OsRCI-1, RCI-1, OsBphi262, OsLOX12, OsLOX2.2, LOX2.2, LOX2.1, OsLOX2.1, OsLOX14, LOX14,OsWRKY102,OsDof3, OsDOF3, OsEnS-34, OsDof10, Dof10, OsDof-10, OsDOF1, DOF1, DOF3, OsRPBF, OsDOF7,Pi36(t), Pi36,Pi-kh, Pi k-h, Pi54, Pi54rh, Pi-k(h), Pik-h, Pikh,Piz-t, Pi-zt, Pi-z(t), Pi2/Pizt, Pizt, Pi9, OsPiz-t,pi21, rMg40, OsHMP26, HMP26, OsHIPP5, HIPP5, OsaHIP05, HIP05 
33962	22270148	Zhu X., Chen S., Yang J., Zhou S., Zeng L., Han J., Su J., Wang L., Pan Q.	The identification of Pi50(t), a new member of the rice blast resistance Pi2/Pi9 multigene family.	Theor. Appl. Genet.	124(7)	1295-304	2012	PI50,PIZ,PI9,PI40,PIGM	Pi50(t),Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2,Pi9(t), Pi9(t)*, Pi9, Pi-9(t),Pi40(t), Pi40, pi40, Pi-40(t), Pi-40,Pigm(t), Pi-gm(t), Pigm
33963	22415685	He X., Liu X., Wang L., Wang L., Lin F., Cheng Y., Chen Z., Liao Y., Pan Q.	Identification of the novel recessive gene pi55(t) conferring resistance to Magnaporthe oryzae.	Sci China Life Sci	55(2)	141-9	2012	PI55-1,PI55-2	pi55-1, pi55(t), OsIRL4,pi55-2, pi55(t)
33964	22916136	Gupta S.K., Rai A.K., Kanwar S.S., Sharma T.R.	Comparative analysis of zinc finger proteins involved in plant disease resistance.	PLoS ONE	7(8)	e42578	2012	PIK,PIB	Pik, RMg8, Pi-k, Pik-2, Pik-1, Pik1, Pik2, Pik-H4, Pikp-1, Pikh-1, Pik1-H4, Pikh-2, Pik2-H4,Pi b(Pi s), Pis, Pib, Pi-s, Pi-hy
33965	21809091	Mao B., Cheng Z., Lei C., Xu F., Gao S., Ren Y., Wang J., Zhang X., Wang J., Wu F., Guo X., Liu X., Wu C., Wang H., Wan J.	Wax crystal-sparse leaf2, a rice homologue of WAX2/GL1, is involved in synthesis of leaf cuticular wax.	Planta	235(1)	39-52	2011	WSL1,WSL2,_,LACS1,KCR1	OsWSL1, FAE', OsFAE1', OsCER6, CER6, OsKCS17, KCS17,OsGL1-1, WSL2,FATB1, OsFATB1,OsLACS1,OsKCR1, OsWSL3, WSL3
33966	21717056	Guo L., Li M., Wang W., Wang L., Hao G., Guo C., Chen L.	Over-expression in the nucleotide-binding site-leucine rich repeat gene DEPG1 increases susceptibility to bacterial leaf streak disease in transgenic rice plants.	Mol. Biol. Rep.	39(4)	3491-504	2012	PI37	Pi37(t), Pi37
33967	0	Saka N., Terashima T., Kudo S., Kato T., Sugiura K., Endo I., Shirota M., Inoue M., Otake T.	A New High Field Resistant Variety Mine-haruka for Rice Blast	Res.Bull.Aichi Agric.Res.Ctr.	39	95-109	2007		
33968	0	Saka N., Fukuoka S., Terashima T., Kudo S., Shirota M., Ando I., Sugiura K., Sato H., Maeda H., Endo I., Kato H., Inoue M.	Breeding of A New Rice Variety Chubu 125 with High Field Resistance for Blast and Excellent Eating Quality	Res.Bull.Aichi Agric.Res.Ctr.	42	171-183	2010		
33969	0	Kiyosawa S.	Inheritance of resistance of the rice variety Pi No.4 to blast	Japan. J. Breeding	17	165-172	1967	PITA	Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30, Trx30
33970	0	Kiyosawa S., Ling Z.	Genetic studies on rice blast relationships	In: Major fungal diseases of rice recent advances. S. Sreenivasaprasad and R. Johnson (eds.), Kluwer Academic Publishers, The Netherlands.		145-162	2001	PI13,PI13,PI14,PI11,PI14	Pi13(t), Pi13(t)*, Pi13,Pi13(t), Pi13(t)*, Pi13, Pi-13(t)*,Pi14(t), Pi14(t)*, Pi14,Pi-11(t)*,Pi14(t), Pi14(t)*, Pi14
33971	0	Zhou H.P., Zhan X.D., Cai R.Y., Cheng S.H., Cao L.Y.	Breeding of Rice Restorer Lines Carrying Blast Resistance Gene Pi25 by MarkerQAssisted Selection	Chinese Journal of Rice Science	22	590-596	2008		
33972	0	Li D., Xu M.H., Yao C.X., Long S.Q.	SSR identification of rice blast resistance gene Pi-d(t) in the core germplasm of Yunnan indigenous rice varieties.	Southwest China Journal of Agricultural Sciences	21	1583-1586	2008		
33973	0	Madhav M.S., Plaha P., Singh N.K., Sharma T.R.	Molecular Characterization of a Genomic Fragment Containing Pi-kh Gene from the Genomic Library of Indica Rice Line Tetep	Journal of Phytopathology	157	322-324	2009	PIKH	Pi-kh, Pi k-h, Pi54, Pi54rh, Pi-k(h), Pik-h, Pikh
33974	0	Lee S., Wamishe Y., Jia Y., Liu G., Jia M.H.	Mapping Two Major Resistance Genes In An Indica Cultivar Zhe733 To The Race IE-1k Of Magnaporthe oryzae	In: Plant & Animal Genomes XVII Conference		-	2009	PI43,PI42	Pi43, Pi43(t), Pi-43(t),Pi42(t), Pi-42(t), Pi42
33975	0	Collemare J., Abdou R., Gagey M.J., Song Z., Bakeer W., Cox R., Ballini E., Tharreau D., Lebrun M.H.	Fungal secondary metabolites as effectors of pathogenicity: role in the complex interplay between rice and Magnaporthe grisea.	In: Proc. EUROPEAN CONFERENCE ON FUNGAL GENETICS 10th		-	2010	PI33	Pi33(t), RMg70, Pi-33(t), Pi-33, Pi33
33976	0	Chauhan R., Durfee T., Holt J., Blattner F., Leong S.	Exceptional haplotype divergence at a rice blast resisance locus, Pi-CO39(t) flanked by clusters of serpin genes	In: Abstr. Plant & Animal Genomes XI Conference		-	2003		
33977	0	Huang L.	Mapping of Broad-spectrum and Durable Blast Resistance Genes in Rice Cultivar Xiangzi3150	Thesis, Hunan Agricultural University, China		-	2010	PI47,PI48	Pi47, Pi47(t),Pi48, Pi48(t)
33978	0	Chen X.W., Xu J., Li S., Li X., Zhu L.	Towards cloning a blast resistance gene Pi-d2(t) in rice Digu.	In: Proc. General Meeting Rice Blast in China, Kunming.		1-1	2001	PID2	Pi-d2, Pi-d(t)2, PiD2(t), Pid2, PI-D2, Pi-d2(t), SDRLK-PID2, OsSDRLK-PID2
33979	0	Wu J., Zhuang J., Fan Y., Li D., Leung H.	Effectiveness of a resistance gene from Gumei 2 against leaf and neck blastunder field conditions in China	RGN	16	90-91	1999	PI24,PI25	Pi24, Pi24(t),Pi25, Pi25(t)
33980	0	Kiyosawa S.	Gene analysis for blast-resistance.	Oryza (Cuttack)	18	196-203	1981		
33982	0	Curley J., Sim S.C., Jung G., Leong S., Warke S., Barker R.E.	QTL mapping of gray leaf spot resistance in ryegrass, and synteny-based comparison with rce blast resistance genes in rice	In: Molecular breeding of rorage and Turf. Hopkins A. et al. (eds.), Kluwer Academic Publishers, The Netherlands.	11	37-46	2004		
33983	0	Hsieh S.C., Lin M.H., Liang H.L.	Genetic analysis in rice. VIII. Inheritance of resistance to races 4, 22,and 25 of Pyricularia oryzae.	Bot. Bull. Acad. Sin.	8	255-260	1967	PI22	Pi22, Pi-22, Pi 22
33984	0	Chen D.X., Chen X.W., Lei C.L., Ma B.T., Wan Y.P., Li S.G.	Rice Blast Resistance of Transgenic Rice Plants with Pi-d2 Gene	Rice Science	17	179-184	2010	PID2	Pi-d2, Pi-d(t)2, PiD2(t), Pid2, PI-D2, Pi-d2(t), SDRLK-PID2, OsSDRLK-PID2
33986	0	Rao Z.M., Wu J.L., Zhuang J.Y., Cha R.Y., Fan Y.Y., Leung H., Zhengh K.L.	Genetic dissection of blast resistances at different growth stages in rice (Oryza sativa L.)	RGN	19	92-93	2002		
33987	0	Toriyama K., Yunoki T., Shinoda H.	Breeding rice varieties for resistance to blast. II. Inheritance of high field resistance of Chugoku 31.	Japan J. Breed	18 (suppl.1)	145-146	1968		
33989	0	Zhuang J., Wu J., Chai R., Fan Y., Jin M., Leung H., Zheng K.	DNA markers based gene mapping for leaf and neck blast resistance and verification of gene effects in rice.	In: Abstr. General Meeting Int. Program Rice Biotechnol. Phuket, Thailand.		297-297	1999		
33990	0	Sharma T.R., Rai A.K., Gupta S.K., Singh N.K.	Broad-spectrum blast resistance gene Pi-kh cloned from rice line Tetep designated as Pi54.	J. Plant Biochem. Biotechnol.	19	87-89	2010	PIK,PIKH	Pik, RMg8, Pi-k, Pik-2, Pik-1, Pik1, Pik2, Pik-H4, Pikp-1, Pikh-1, Pik1-H4, Pikh-2, Pik2-H4,Pi-kh, Pi k-h, Pi54, Pi54rh, Pi-k(h), Pik-h, Pikh
33991	0	Lee S., Costanzo S., Lee S., Dai Y., Correll J., Roy-Chodhury M., Cartwright R., Lee F.	An update of genetic studies of disease resistance genes and their utilizations for rice protection	In: Proc. Rice Technical Working Group Meeting		-	2010	PI43,PI42	Pi43, Pi43(t), Pi-43(t),Pi42(t), Pi-42(t), Pi42
33992	0	Yaegashi H., Asaga K., Yamada M.	Presumed genotypes for true resistance of recommended rice varieties to rice blast.	Bull. Tohoku Natl. Agric. Exp. Stn.	68	1-19	1983		
33993	0	Kim D.M., Ju H.G., Kang J.W., Han S.S., Ahn S.N.	A new rice variety 'Hwaweon 4' with durable resistance to rice blast.	Korean Journal of Breeding Science	43	620-624	2011		
33995	0	RoyChowdhury M., Jia Y., Cartwright R.D.	Analysis of rice blast resistance genes in the national small grains collection (NSGC)	Ph.D. Thesis, University of Arkansas, USA		-	2011	PIX	Pi-x(t), Pi-x1
33996	0	Zhuang J.Y., Wu J.L., Chai R.Y., Fan Y.Y., Jin M.Z., Leung H., Zheng K.L.	Rapid identification of resistance gene analogs linked to two blast resistance genes in rice	RGN	15	125-127	1998	PI25,PI24	Pi25, Pi25(t),Pi24, Pi24(t)
33997	0	McCouch S.R., Nelson R.J., Tohme J., Zeigler R.S.	Mapping of Blast Resistance Genes in Rice	In: Rice Blast Disease. Zeigler et al. (eds.), IRRI, Manila, Philippines		167-186	1994	PIIS1	Pi is1(Rb4), Rb4, Rb-4, Piis1, Pi-is-1
33998	0	Chen J.	Fine Mapping and Map-based Cloning of a Blast-resistance Gene Pi-y43(t) from Japonica Rice Yunyin	Thesis, Fujian Agriculture and Forestry University, China		-	2011	PIB,PIB2	Pi b(Pi s), Pis, Pib, Pi-s, Pi-hy,Pib2
33999	0	RoyChowdhury M.	Characterization of Rice Blast Resistance Gene Pi-z(t) in Rice Germplasms using DNA markers and Pathogenicity Assays	In: 87th SDAPS Meeting, Orlando, Florida, USA		-	2010		
34000	0	Khush G.S.	Breeding rice for multiple disease and insect resistancce	In: Rice inprovement in China and other Asian countries IRRI & CAAS		219-238	1980	PI22	Pi22, Pi-22, Pi 22
34001	0	Phaitreejit k., Srikaew E., Jantasuriyarat C., Sriwongchai T., Kate-ngam S.	Screening Thai landrace rice for blast resistance gene Pi9, Pi36, Pigm(t) using DNA markers	Thai J. Genet.	4	52-62	2011	PIGM	Pigm(t), Pi-gm(t), Pigm
34002	0	He Z., Deng Y., Xu J., Chen H., Zhu X.	Functional and Evolutionary Analysis of the Broad Spectrum Resistance Locus Pigm(t) to Rice Blast Magnorpathe oryzae	In: Abstr. The 4th International Rice Blast Conference		-	2007	PIGM	Pigm(t), Pi-gm(t), Pigm
34003	0	Yang J.Y., Chen S., Zeng L.X., Li Y.L., Chen Z., Li C.Y., Zhu X.Y.	Race Specificity of Major Rice Blast Resistance Genes to Magnaporthe grisea Isolates Collected from indica Rice in Guangdong, China	Rice Science	15	311-318	2008		
34004	0	Liu, Liu B., Zhu X., Jan L., Hei L.	Fine mapping and molecular marker development for Pi46 (t), a new NBS-LRR gene conferring broad-spectrum resistance to M. oryzae in rice.	In preparation		-			
34005	0	Fukuta Y., Yanoria M.J.T., Tsunematsu H., Imbe T., Kato H., Ebron L.A., Khush G.V.	Development of international standard differential set for blast resistance in rice (Oryza sativa L.)	4th International Crop Science Congress proceedings		-	2004		
34006	0	Kato H., Imb,e T., Tsunematsu H., Fukuta Y.	Developing rice blast differential lines and wvaluating partial resistance for the breeding of durable rice varieties in the tropics	In: IRRI Limited Proceedings No.10: Blessings from nature and science for the future. Manila, Philippines.		31-44	2004	PI19	Pi19(t), Pi14, Pi19
34008	0	Li S.G., Ma Y.Q., Wang Y.P., Wang W.M., Zhou K.D., Zhu L.H.	Genetic analysis and mapping of blast resistance gene in indica rice cultivar Digu.	Progress in Natural Science	10	44-46	2000	PID1	Pi-d1, Pi-d(t), Pi-d(t)1, PiD1(t), Pid1, Pid1(t)
34009	0	Yu Z.H.	Molecular mapping of rice (Oryza sativa L.) genes via linkage to restriction fragment length polymorphism (RFLP) markers.	PhD Thesis, Cornell University, USA		-	1991		
34010	0	Kinoshita T.	Standardizationn of gene symbols and linkage maps in rice	Rice Genetics. IRRI, Manila, Philippines.		215-228	1986	PIIS1	Pi is1(Rb4), Rb4, Rb-4, Piis1, Pi-is-1
34011	0	RoyChowdhury M., Jia Y., Jia M., Fjellstrom R., Cartwright R.D.	Identification of rice blast resistant gene Pi-z(t) in NSGC using DNA markers and pathogenicity assays	In: Abstr. 5th International Rice Blast Conference, Little Rock, Arkansas, USA		-	2010	PIZ	Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2
34012	0	Lu J., Qianm H.R., Zhuang J.T., Lin H.X., Zheng K.L.	Identification of a RAPD marker linked to a blast resitance gene in Oryza sativa	Chinese Rice Research Newsletter	2	2-3	1994	PI11	Pi-11(t)*
34013	0	Lei C.L., Zhang G.M., Cheng Z.J., Ma J.T., Wang J.L., Xin A.H., Chen P., Xiao J.L., Zhang X., Liu Y.X., Guo X.P., Wang J., Zhai H.Q., Wan J.M.	Pathogenic Races and Virulence Gene Structure of Magnaporthe oryzae Population and Rice Breeding Strategy for Blast Resistance in Heilongjiang Province	Acta Agronomica Sinica	37	18-27	2011		
34014	0	Sharma T.R., Shankar P., Singh B.K., Jana T.K., Madhav M.S., Gaikwad K., Singh N.K., Plaha P., Rather R.	Molecular mapping of rice blast resistance gene Pi-kh in the rice variety Tetep.	J. Plant Biochem. Biotechnol.	14	127-133	2005	PIKH	Pi-kh, Pi k-h, Pi54, Pi54rh, Pi-k(h), Pik-h, Pikh
34017	0	Kiyosawa S.	Methods for tests and gene analyses of blast resistance of rice varieties.	Oryza (Cuttack)	13	1-32	1976	PIB	Pi b(Pi s), Pis, Pib, Pi-s, Pi-hy
34018	0	Wu J.L., Chai R.Y., Fan Y.Y., Li D.B., Zheng K.L., Leung H., Zhuang J.Y.	Clustering of Major Genes Conferring Blast Resistance in a Durable Resistance Rice Cultivar Gumei 2	Rice Science	11	161-164	2004	PI26	Pi26(t), Pi26
34019	0	Jia Y., Wang X., Costanzo S., Lee S.	Understanding the co-evolution of the rice blast resistance gene PI-TA and Magnaporthe oryzae avirulence gene AVR-PITA	In: Advances in Genetics, Genomics and Control of Rice Blast Disease. Wang G.L., Valent B. (eds.), Springer Science+Business Media B.V.		137-148	2009		
34020	0	Wood M.	Improving Rice, A Staple Crop Worldwide	Agricultural Research Magazine	58	4-7	2010	PI43,PI42	Pi43, Pi43(t), Pi-43(t),Pi42(t), Pi-42(t), Pi42
34021	0	Yang Q., Saito K., Yang P., Wang Q., Sunohara Y., Zheng F., Ye C., Kato A.	Molecular mapping of a new blast resistance gene Pi25(t) possessed in a Japonica rice cultivar, Oryza sativa L. cv. Yunxi 2.	In: Proc. General Meeting Rice Blast in China, Kunming.		49-55	2001	PI25	Pi25(t), Pi-25(t), RMg62
34023	0	Fukuta Y., Yanoria M.J., Mercado-Escueta D., Ebron L.A., Fujita Y., Araki E., Khush G.S.	Quantitative trait loci (QTL) reaction to rice blast isolates from Japan and the Philippines.	In: Proc. The 3rd International Rice Blast Conference		113-121	2004		
34024	0	Chen D.H., Nelson R.J., Wang G.L., Inukai T., Mackill D.J., Ronald P.C.	Characterization of blast resistance in the durably resistant rice cultivar Moroberekan	In: Advances in rice blast research. D. Tharreau et al. (eds.), Kluwer Academic Publishers, The Netherlands.		17-27	2000	PI7,PI44	Pi7, Pi-7(t), Pi7(t),Pi44(t)*, Pi44(t), Pi44, Pi-44(t)
34025	0	Silue D., Tharreau D., Notteghem J.L.	Genetic control of Magnaporthe grisea avirulence to rice cultivar Pi-No4 and K1.	In: Abstr. 6th International Congress of Plant Pathology, Montreal, Canada		159-159	1993		
34026	0	Saka N.	Marker-assisted pyramiding of field resistance genes Pb1, pi21 and Pi39 in rice.	In: 5th International Rice Genetics Symposium		-	2006	PI39	Pi39(t), Pi39
34028	0	Fukuoka S., Okuno K., Kawase M.	Patent application title: rice blast susceptibility gene pi21, resistance gene pi21 and uses thereof	US patent		-	2009	PI21	pi21, rMg40, OsHMP26, HMP26, OsHIPP5, HIPP5, OsaHIP05, HIP05 
34030	0	Inukai T., Nelson R.J., Zeigler R.S., Sarkarung S., Mackill D.J., Bonman J.M., Takamure I., Konoshita T.	Genetic analysis of blast resistance in tropical rice cultivars using near-isogenic lines	Rice Genetics III. IRRI, Manila, Philippines.		447-450	1996		
34031	0	Pan Q., Tanisaka T., Okumoto Y., Yamagata H.	Gene analysis for the blast resistance of a Yunnan local variety, Maowanggu.	Japan. J. Breed.	43 (Suppl. 2)	101-101	1993	PI13,PI14	Pi13(t), Pi13(t)*, Pi13,Pi14(t), Pi14(t)*, Pi14
34033	0	Kinoshita T.	B. Report of the Committee on Gene Symbolization, Nomenclature and Linkage Groups II. Report from coordinator: Linkage mapping using mutant genes in rice	RGN	15	13-74	1998	PI1	Pi1, Pi-1, Pi1-5C, Pi1-6C
34034	0	Zhuang J.Y., Chai R.Y., Ma W.B., Lu J., Jin M.Z., Zeng K.L.	Genetic analysis of the blast resistance at vegetative and reproductive stages in rice	RGN	14	62-63	1997	PI24,PI25	Pi24, Pi24(t),Pi25, Pi25(t)
34035	0	Yang A.	Identification and Fine Mapping of Blast Resistance Genes in Rice Cultivar 9311	Thesis, Chinese Academy of Agricultural Sciences, China		-	2010		
34036	0	Kiyosawa S.	The inheritance of blast resistance transferred from some indica varieties in rice.	Bull. Nat. Inst. Agr. Sci	23	69-96	1972		
34037	0	Ise K.	Reexamination of linkage relationships between blast resistance genes Pii and Piz using near-isogenic lines (NILs) of rice.	IRRN	17	8-9	1993		
34038	0	Lee E.J., Cho S.Y.	Variation in races of rice blast disease and varietal resistance in Korea	Paper presented at the Focus on Irrigated Rice. Seoul, Korea.		27-31	1990	PI18	Pi18(t)*, Pi18(t), Pi18, Pi-18(t), Pi-18
34039	0	Lei C., Wang J., Mao S., Zhu L., Ling Z.	Study on allelism between blast resistance gene Pi-zhitj in indica variety Zhaiyeqing 8iZYQSj and known blast resistance gene	Rice Science	5	2-3	1997	PI11	Pi11(t)*(Pi zh), Pi11(t)*, Pizh, Pi-zh, Pi-zh*, Pi-zh(t), Pi-11(t), Pi-11, Pi11
34040	0	Araki E., Yanoria M.J.T., Ebron L.A., Mercado-Escueta D., Takai T., Fukuta Y.	Mapping of a rice blast resistance gene Pish.	Breeding Research	5 (Suppl. 2)	333-333	2003	PISH	Pi sh, Pish, Pi-sh, Pish(t)
34041	0	Fukuta Y.	The Pish blast resistance gene of rice (Oryza sativa L.) is located on the long arm of chromosome 1	JIRCAS Working Report Research Highlights		-	2004	PISH	Pi sh, Pish, Pi-sh, Pish(t)
34042	0	Zenbayashi-Sawata K., Ashizawa T., Koizumi S.	Pi34-AVRPi34: a new gene-for-gene interaction for partial resistance in rice to blast caused by Magnaporthe grisea	Journal of General Plant Pathology	71	395-401	2005	PI34	Pi34, RMg71, Pi24(t)
34044	0	Liu X.Q., Li Y.Y., Wang L.Y., Liu X.Q., Wang C.T., Wang L., Pan Q.H.	The effect of the rice blast resistance gene Pi36 on the expression of disease resistance-related genes	Chinese Science Bulletin	55	1881-1888	2010	PI36	Pi36(t), Pi36
34045	0	Ou S.H.	Part III. FUNGUS DISEASE FOLIAGE DISEASE 1. Blast	Rice Disease Second Edition. Commonwealth Mycological Institute UK		109-200	1985	PI22	Pi22, Pi-22, Pi 22
34046	0	Li X., Mao X., Xing D., Wnag X.	Research progress in rice blast resistance genes	Molecular Plant Breeding	1	725-730	2003		
34047	0	Huang H., Huang L., Feng G., Wang S., Wang Y., Liu J., Jiang N., Yan W., Xu L., Sun P., Li Z., Pan S., Liu X., Xiao Y., Liu E., Dai L., Wang G.	Identification of Two Major Resistance Genes to Rice Blast in the Durably Resistant Rice Cultivar Xiangzi 3150	In: Abstr. Plant Genomics in China X		-	2009		
34048	0	Ling Z., Wang J., Pan Q., Li M., Huang Q., Qiu Z.	Classification for blast resistance of some Japonica type varieties from Yunnan province	Scientia Agricultura Sinica	23	5-11	1990	PIB	Pi b(Pi s), Pis, Pib, Pi-s, Pi-hy
34050	0	Jena K.K., Jeung J.U., Kim B.R., Han S.S., Suh J.P., Cho Y.C., Roh J.H., Kim Y.G., Brar D.S.	A New Gene, Pi40 Confers Broad-Spectrum Blast Disease Resistance And Useful In Marker-Assisted Selection (MAS) For Blast Resistance In Rice	In: Abstr. Plant & Animal Genomes XVI Conference		-	2008	PI40	Pi40(t), Pi40, pi40, Pi-40(t), Pi-40
34051	0	Zhang J.W., Tan Y.L., Hong R.K., Fan J.H., Luo Q., Zeng Q.C.	Genetic Analysis and Gene Mapping of Rice Blast Resistance in japonica Variety Ziyu 44	Chinese Journal of Rice Science	23	31-35	2009	PIZY	Pi-zy, Pi-zy(t)
34052	0	Kim D.M., Ju H.G., Yang P., Han S.S., Roh J.H., Ahn S.N.	Mapping and race specific reaction of the resistance gene Pi45(t) in rice.	Korean Journal of Breeding Science	43	42-49	2011		
34053	0	Chen H.Q., Chen Z.X., Ni S., Zuo S.M., Pan X.B., Zhu X.D.	Pyramiding Three Genes with Resistance to Blast by MarkerQAssisted Selection to Improve Rice Blast Resistance of Jin 23B	Chinese Journal of Rice Science	22	23-27	2008		
34054	0	Cho Y.C., Choi M.K., Baek J.P., Suh J.P., Hong H.C., Kim Y.G., Koizumi S., Jena K.K., Choi H.C., Hwang H.G.	Resistant genes and their effects to rice blast in isogenic lines of genetic background of Chucheongbyeo and Suweon345	RGN	20	101-104	2003	PITQ5,PI44	Pitq5*, Pi-tq5, Pi-tq5, Pitq-5, Pitq5,Pi44(t)*, Pi44(t), Pi44, Pi-44(t)
34056	0	Virmani S.S.	Disease and Insect Resistance in Hybrid Rice	In: Monographs on Theoretical and Applied Genetics 22: Heterosis and Hybrid Rice Breeding. Virmani S.S. IRRI, Springer-Verlag, Berlin Heidelberg, Germany		111-118	1994		
34057	0	Wamishe Y., Jia Y., Jia M., Liu G.	Identification of novel blast resisitance genes in rice cultivar ZHE733	In: Proc. Rice Technical Working Group Meeting		-	2006		
34058	0	Chen D., Zeigler R.S., Ahn S.W., Nelson R.J.	Phenotypic characterization of the rice blast resistance gene Pi2(t).	Plant Dis.	80	52-56	1996	PIZ	Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2
34059	0	Hsieh S.C., Chien C.C.	Recent status of rice breeding for blast resistance in Taiwan with special regard to races of the blast fungus.	Symposium on Rice Disease and their Control by Growing Resistant Varieties and Other Measures. Tokyo; Agriculture, Forestry and Fisheries Research Council.		68-81	1967	PI22	Pi22, Pi-22, Pi 22
34060	0	Kiyosawa S.	Establishment of differential varieties for pathogenicity test of rice blast fungus	RGN	1	95-96	1984	PIK,PIKS,PIKM,PIKP	Pik, RMg8, Pi-k, Pik-2, Pik-1, Pik1, Pik2, Pik-H4, Pikp-1, Pikh-1, Pik1-H4, Pikh-2, Pik2-H4,Pi-ks, Pi-s, Pik-s, Piks,Pik-m, Pi-m, Pi-km, Pikm, Pi m, Pikm1-TS, Pikm2-TS, Pi-km1, Pi-km2,Pik-p, Pi-kp, Pikp, Pikp-1, Pikp-2
34061	0	Koide Y., Kobayashi N., Xu D., Fukuta Y.	Blast resistance genes and their selection markers in rice (Oryza sativa L.).	In: Development and characterization of blast resistance using differential varieties in rice. JIRCAS Working Report No. 63. JIRCAS, Tsukuba, Japan.		95-122	2009		
34062	0	Sharma T.R., Jana T.K., Shankar P., Singh B.K., Plaha P., Gaikwad K., Singh N.K.	Development of molecular makers for blast-resistance genes in Oryza sativa.	In: Abstr. The second international congress on plant physiology, New Delhi		484-484	2003		
34064	0	Terashima T., Fukuoka S., Saka N., Kudo S.	Mapping of a blast field resistance gene Pi39(t) of elite rice strain Chubu 111.	Plant Breeding	127	485-489	2008	PI39	Pi39(t), Pi39
34065	0	Jia Y., Correll J.C., Lee F.N., Eizenga G.C., Yang Y., Gealy D.R., Valent B., Zhu Q.	Understanding molecular interaction mechanisms of the Pi-ta rice resistance genes and the rice blast pathogen.	Phytopathology	91 (Suppl. 6)	44-44	2001	PITA	Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30, Trx30
34066	10887695	J L Wang, C L Lei, W R Jiang, Z Z Ling	[Genetic studies of blast resistance of indica variety Zhefu 802].	Yi Chuan Xue Bao	27(3)	235-9	2000		
34067	11055122	X H Tan, X W Chen, S G Li, S G Liu, L H Zhu	[Gene analysis of blast resistance in an indica variety Digu].	Yi Chuan Xue Bao	27(8)	701-5	2000	PID1	Pi-d1, Pi-d(t), Pi-d(t)1, PiD1(t), Pid1, Pid1(t)
34068	11059273	S G Li, Y P Wang, H Y Li, K D Zhou, L H Zhu	[Utilization of a microsatellite marker to identify rice blast resistance gene in two segregating populations].	Sheng Wu Gong Cheng Xue Bao	16(3)	324-7	2000	PID1	Pi-d1, Pi-d(t), Pi-d(t)1, PiD1(t), Pid1, Pid1(t)
34069	12561228	Jian-Fei Wang, Xin-Jian He, Hong-Sheng Zhang, Zhi-Yi Chen	[Genetic analysis of blast resistance in japonica rice landrace heikezijing from Taihu region].	Yi Chuan Xue Bao	29(9)	803-7	2002		
34070	15973995	Xue-Wei Chen, Shi-Gui Li, Yu-Qing Ma, Han-Yun Li, Kai-Da Zhou, Li-Huang Zhu	[Marker-assisted selection and pyramiding for three blast resistance genes, Pi-d(t)1, Pi-b, Pi-ta2, in rice].	Sheng Wu Gong Cheng Xue Bao	20(5)	708-14	2004	PID1	Pi-d1, Pi-d(t), Pi-d(t)1, PiD1(t), Pid1, Pid1(t)
34071	17572362	S P Kumar, V Dalai, N K Singh, T R Sharma	Comparative analysis of the 100 kb region containing the Pi-k(h) locus between indica and japonica rice lines.	Genomics, proteomics & bioinformatics	5(1)	35-44	2007	PIKH	Pi-kh, Pi k-h, Pi54, Pi54rh, Pi-k(h), Pik-h, Pikh
34072	18271255	Shu-Li Wang, Li-Yun Li, Jun-Jun Shang, Wang J., Guo-Zhen Liu	[Expression and autophosphorylation analysis of Xa21 and Pi-D2 protein kinases in Saccharomyces cerevisiae].	Wei Sheng Wu Xue Bao	47(6)	1009-12	2007	PID2	Pi-d2, Pi-d(t)2, PiD2(t), Pid2, PI-D2, Pi-d2(t), SDRLK-PID2, OsSDRLK-PID2
34073	18332008	Zhou M., Shi-Hu Yang, Lan Y., Yu-Kuan Jin, Jian-Min Wan	[Initial functional analysis of the promoter region and coding region of Pib gene in transgenic rice].	Yi Chuan	30(3)	367-72	2008	PIB	Pi b(Pi s), Pis, Pib, Pi-s, Pi-hy
34074	18349514	Ming-Zhi Yang, Zai-Quan Cheng, Shan-Na Chen, Qian J., Ling-Ling Xu, Xing-Qi Huang	A rice blast-resistance genetic resource from wild rice in Yunnan, China.	Zhi Wu Sheng Li Yu Fen Zi Sheng Wu Xue Xue Bao	33(6)	589-95	2007		
34075	18443412	Soon-Wook Kwon, Young-Chan Cho, Yeon-Gyu Kim, Jung-Pil Suh, Ji-Ung Jeung, Jae-Hwan Roh, Sang-Kyu Lee, Jong-Seong Jeon, Sae-Jun Yang, Young-Tae Lee	Development of near-isogenic Japonica rice lines with enhanced resistance to Magnaporthe grisea.	Mol. Cells	25(3)	407-16	2008	PI5-2,PIA,PI3,PITA,PIB,PII	Pi3, Pi5, Pi-3(t), Pi-3, Pi3(t), Pi5(t), Pi5-2, Pii,  RMg22, RMg21,Pi a, Pia, Pi-a, Pia-1, Pia-2,Pi3, Pi5, Pi-3(t), Pi-3, Pi3(t), Pi5(t), Pi5-1, Pii,  RMg22, RMg21,Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30, Trx30,Pi b(Pi s), Pis, Pib, Pi-s, Pi-hy,Pi i, Pii, Pi-i, Pii(t)
34076	22196797	Liu X.Q., Zhang D., Zhang X.M., Wang C.T., Liu X.Q., Tan Y.P., Wu Y.H.	Study on the interaction between methyl jasmonate and the coiled-coil domain of rice blast resistance protein Pi36 by spectroscopic methods.	Spectrochim Acta A Mol Biomol Spectrosc	88	72-6	2012	PI36	Pi36(t), Pi36
34077	22592658	Das A., Soubam D., Singh P.K., Thakur S., Singh N.K., Sharma T.R.	A novel blast resistance gene, Pi54rh cloned from wild species of rice, Oryza rhizomatis confers broad spectrum resistance to Magnaporthe oryzae.	Funct. Integr. Genomics	12(2)	215-28	2012	PIKH	Pi-kh, Pi k-h, Pi54, Pi54rh, Pi-k(h), Pik-h, Pikh
34078	22667447	Roychowdhury M., Jia Y., Jia M.H., Fjellstrom R., Cartwright R.D.	Identification of the rice blast resistance gene Pib in the National Small Grains Collection.	Phytopathology	102(7)	700-6	2012	PIB	Pi b(Pi s), Pis, Pib, Pi-s, Pi-hy
34079	22779744	Wang Y., Wang D., Deng X., Liu J., Sun P., Liu Y., Huang H., Jiang N., Kang H., Ning Y., Wang Z., Xiao Y., LIU X., Liu E., Dai L., Wang G.L.	Molecular Mapping of the Blast Resistance Genes Pi2-1 and Pi51(t) in the Durably Resistant Rice 'Tianjingyeshengdao'.	Phytopathology	102(8)	779-86	2012	PI51,PIZ	Pi51(t),Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2
34080	0	Rani M.G., Adilakshmi D.	Genetic analysis of blast resistance in rice with simple sequence repeats (SSR)	Journal of Crop Improvement	25	232-238	2011		
34081	0	Fukuoka S., Okuno K., Kawase M.	Patent application title: Rice blast-susceptible gene Pi21 and resistance gene pi2, and utilization thereof, Publication number: 2011-160806	Japanese patent		-	2011		
34082	0	Fukuda Y., Araki E., Tsunematsu H., Kato H., Imbe T., Yanoria M.J., Ebron L.A., Khush G.G.	Development of new international standard differential variety series to integrate blast resistance of rice (Oryza sativa L.)	JIRCAS Research Highlights	11	-	2003		
34083	0	Lopez J., Tohme J., Correa F., Martinez C., Hulbert S., Zeigler R., Gallego G., Escobar F., Prado G., Aricapa G.	Identification of molecular markers associated with the durable blast resistance genes in the commercial rice cultivar Oryzica Llanos 5	CIAT OUTPUT 2. Chatracterizing rice pest and the genetics of resistance		123-126	2005		
34085	0	Inukai T., Nelson R.J.	Mapping for blast resistance gene Pi-3 derived from rice cultivar Pai-kan-tao.	The Crop Science Society of Japan, Hokkaido danwakai kaihou	35	54-55	1994	PI5-2,PI3	Pi3, Pi5, Pi-3(t), Pi-3, Pi3(t), Pi5(t), Pi5-2, Pii,  RMg22, RMg21,Pi3, Pi5, Pi-3(t), Pi-3, Pi3(t), Pi5(t), Pi5-1, Pii,  RMg22, RMg21
34086	0	Utami D.W., Moeljopawiroa S., Aswidinnoor H., Setiawan A., Hanarida I.	Blast resistance genes in wild rice Oryza rufipogon and rice cultivar IR641	Indonesian Journal of Agriculture	1	71-76	2008	PIR12-2,PIR2-3,PIR9-2,PIRF2-1	Pir12-2, Pir12-2(t),Pir2-3, Pir2-3(t),Pir9-2, Pir9-2(t),Pirf2-1, Pirf2-1(t)
34087	22976392	Jerwin R Undan, Tamiru M., Abe A., Yoshida K., Kosugi S., Takagi H., Yoshida K., Kanzaki H., Saitoh H., Fekih R., Sharma S., Undan J., Yano M., Terauchi R.	Mutation in OsLMS, a gene encoding a protein with two double-stranded RNA binding motifs, causes lesion mimic phenotype and early senescence in rice (Oryza sativa L.).	Genes Genet. Syst.	87(3)	169-79	2012	-,-,LMS	OsCPL1, CPL1,OsCPL2, CPL2,OsLMS
34088	15101094	Qiu-Min Han, Jiang H., Qi X., YU J., WU P.	A CHASE domain containing protein kinase OsCRL4, represents a new AtCRE1-like gene family in rice.	J. Zhejiang Univ. Sci.	5(6)	629-33	2004	HK3,HK5,HK4,CKT1	OHK2, HK, OsHK3, Ohk, Crl2, Ohk2, OsHK3b, OsHK03,OHK3, HK, OsHK5, Crl3, Ohk3, OsHK2,OHK4, HK, OsHK4, Crl1b, Ohk4,OHK5, HK, OsHK6, HK6, Crl1a, Ohk5, OsHK1, OsCKT1 
34089	17408920	Du L., Jiao F., Chu J., Jin G., Chen M., WU P.	The two-component signal system in rice (Oryza sativa L.): a genome-wide study of cytokinin signal perception and transduction.	Genomics	89(6)	697-707	2007	PHP2,RR27,AHP1,RR29,RR13,RR12,AHP2,HST1,RR23,RR26,RR25,PHP1,RR28,DLC1,CRL4,RR21,PHP3,CKT1,RR8	OsPHP2, Hpt4, OsHP5, HP5, OsHpt4, OsHP05,OsRR27, Rra16, OsPRR5, OsRRA16,OHP1, HPt, OsAHP1, Hpt2, Ohp1, OsHP2, HP2, OsHpt2, OsHPt2, OsHP02,OsRR29, Rrb7, OsPRR4, OsRRB7,OsRR13, Rra12, OsRR12, OsRRA12, RR12,OsRR12, Rra11, OsRR8, RR8, OsRRA11,OHP2, HPt, OsAHP2 Hpt3, Ohp2, OsHP1, HP1, OsHpt3, OsHP01,RR22, OsRR22, Rrb4, Orr2, OsRR20, OsRRB4, OsHST1,OsRR23, Rrb5, Orr3, OsRR18, RR18, OsRRB5,OsRR26, Rrb6, Orr6, OsRR16, RR16, OsRRB6,OsRR25, Rrb3, Orr5, OsORR5, OsRR21, OsRRB3,OsPHP1, Hpt1, OsHP3, sHP3, OsHpt1,OsRR28, Rra22, OsPRR3, OsRRA22,RR24, OsRR24, Rrb2, Orr4, OsRR17, RR17, OsRRB2, OsRR24/LEPTO1, OsLEPTO1, LEPTO1, OsDLC1,CHARK, S/T kinase, OsCRL4, OsHKL1, OsCDP,OsRR21, Rrb1, Orr1, OsRR19, RR19, OsRRB1, ORR1,OsPHP3, Hpt5, OsHP4, HP4, OsHpt5, OsHpt5a, OsHpt5b, OsHpt5c,OHK5, HK, OsHK6, HK6, Crl1a, Ohk5, OsHK1, OsCKT1 ,rr8, OsRR8, Rra13, OsRR15, RR15, OsRRA13
34090	21357645	Xie X.Z., Xue Y.J., Zhou J.J., Zhang B., Chang H., Takano M.	Phytochromes regulate SA and JA signaling pathways in rice and are required for developmentally controlled resistance to Magnaporthe grisea.	Mol Plant	4(4)	688-96	2011	CHS,PAD4,NH1,ICS1,_,PAL1,AOS2,PAL1,PR1A,EDS1,PR1B	CHS*, Oschs, chs, chas, OsCHS, OsCHS1, CHS1, OsPKS26, PKS26, OsCHS24, CHS24, OsCHS27, CHS27,OsPAD4,OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2, DLN5, OsDLN5,  OsBTBA1, BTBA1,OsICS1, OsICS, ICS,Lox2:Os:1, OsLOX9, LOX9, OsLOX8, LOX8, OsLOX2, LOX2, OsRLL, OsHI-LOX, HI-LOX, RLL2 LOX, RLL2, Lox2osPil, OsLOX2;1, LOX2;1, OsLOX1, OsLOX7, LOX7,OsPAL, Pal1*, Pal1, PAL, Pal_1, PalI, PAL2, OsPAL01, PAL01, OSPAL, CP-1, GP-1, OsPAL1, PAL3, OsPAL3,OsAOS2, CYP74A2, OsAOS, OsAOS1,OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6,OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1, OsPR1b, PR1alpha, OsPR1alpha,OsEDS1,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1, OsPR1a, PR1a
34091	17263873	Boonburapong B., Buaboocha T.	Genome-wide identification and analyses of the rice calmodulin and related potential calcium sensor proteins.	BMC Plant Biol.	7	4	2007	CALA,CML5,_,CML24,CAM1-1,CML3,CML32,CML12,CML13,CML17,CML18,CML19,CML21,CML11,CML14,CML2,CML15,CML22,CML23,CML25,CML26,CML27,CML20,CML29,CML30,CML6,CML8,CML9,CML7,CALB,CML31,CML10,CML16,CML28,CML4,CAM1-3,CAM61	CALa*, Cal1, CaM-2, CAM2, CAM, OsCaM2, OsCam2, OsCaM1, CaM1,OsCML5,OsCaM3, OsCam3, CaM3,OsCML24,OsCaM1, OsCam1-1, OsCaM1-1, CAM3, Cam1-1, OsCAM1.1, CAM1.1,OsCML3, OsSTA271, OsCML3m, OsCML3s,OsCML32,OsCML12,OsCML13,OsCML17,OsCML18,OsCML19,OsCML21,OsCML11,OsCML14,OsCML2,OsCML15,OsCML22,OsCML23,OsCML25,OsCML26,OsCML27,OsCML20,OsCML29,OsCML30,OsCML6,OsCML8,OsCML9,OsCML7, OsSTKC,CALb*, Cal2, CAM1-2, CAM, CaM-1, OsCam1-2, OsCaM1-2,OsCML31, OsMSR2, MSR2,OsCML10,OsCML16,OsCML28,OsCML4,OsCam1-3, OsCaM1-3, CAM1,CaM61, OsCaM61, OsCML1, OsCML1d
34092	22807623	Rashid M., Guangyuan H., Guangxiao Y., Hussain J., Xu Y.	AP2/ERF Transcription Factor in Rice: Genome-Wide Canvas and Syntenic Relationships between Monocots and Eudicots.	Evol. Bioinform. Online	8	321-355	2012	WRI4,PLT4,NGR5,PLT6,DREB1A,PLT2,ERF62,ERF92,ERF106,PLT8,FZP,PLT10,ERF140,AP2/EREBP47,ERF13,ERF16,AP2/EREBP79,AP2/EREBP139,AP2/EREBP86,AP2/EREBP92,AP2/EREBP31,AP2/EREBP101,AP2/EREBP68,AP2/EREBP153,ERF138,ERF84,ERF89,ERF113,ERF120,ERF122,ERF125,ERF128,ERF129,ERF80,ERF85,ERF86,ERF90,PLT7,ERF94,ERF97,PLT9,ERF18,ERF19,ERF95,AP2/EREBP59,ERF72,ERF21,ERF23,ERF36,ERF37,ERF39,ERF43,ERF45,ERF49,ERF54,ERF55,ERF56,ERF136,ERF22,ERF123,ERF108,DREB1D,ERF71,ERF134,ERF132,ERF96,ERF8,ERF20,ERF76,ERF74,ERF119,ERF121,WRI3,ERF59,ERF32,ERF57,ERF1,ERF17,RPH1,MFS1,ERF141,ERF47,ERF109,ERF93,EREBP1,WRI1-2,ERF66,ERF77,AP2/EREBP22,AP2/EREBP85,AP2/EREBP77,AP2/EREBP127,DREB2A,AP2/EREBP129,ERF69,ERF127,AP2/EREBP96,ERF87,ERF41,ERF110,ERF48,ERF51,NDL1,LFS,ERF68,ERF112,ERF67,WRI1-1,SNB,ERF117,ERF58,ERF81,ERF82,ERF83,ERF88,ERF4,ERF5,ERF6,ERF9,ERF14,ERF15,ERF98,ERF107,ERF100,ERF118,ERF38,ERF53,ERF34,ERF64,ERF12,ERF105,ERF7,ERF33,ERF65,DREB1E,ERF124,PLT1,ERF3,ERF99,ERF131,DREB1C,ERF11,ERF133,ERF104,ERF91,ERF35,ERF103,ERF2,EBP-89,RSR1,ERF115,ERF44,SUB1C,ERF50,ERF28,ERF61,SUB1B,ERF102,DREB1F,DREB1G,ERF3,ERF42,ERF101,DREB1B,IDS1,SHAT1,ERF137,PLT5,PLT3	AP2/EREBP99, AP2/EREBP#099, OsWRI4,OsPLT4, AP2/EREBP#037, AP2/EREBP37, BBM4, OsBBM4,ERF142, OsERF#142, OsERF142, AP2/EREBP#049, AP2/EREBP49, SMOS1, OsSMOS1, SHB, OsAP2-EREBP-049, RLA1, RLA1/SMOS1, OsERF142/SMOS1, OsNGR5, GR5, OsGR5,OsPLT6, AP2/EREBP#118, AP2/EREBP118, BBM1, OsBBM1, OsBBML1, BBML1, OsASGR-BBML1, ASGR-BBML1,OsDREB1A, Os DREB1A, CBF3, OsCBF3, OsDREB1A/OsCBF3, ERF24, OsERF24, OsERF024, OsERF#024, AP2/EREBP#114, AP2/EREBP114, OsDREBL,OsPLT2, AP2/EREBP#060, AP2/EREBP60, HL6, OsHL6,OsERF#062, OsERF062, OsERF62, AP2/EREBP#125, AP2/EREBP125, AP2-125, OsLG3, LG3, OsLG3/OsAP2-125, OsAP2-125, WAP1, OsWAP1, OsSTAP1, STAP1, ERF1, OsERF1,OsERF#092, OsERF092, OsERF92, ERF922, OsERF922, AP2/EREBP#078, AP2/EREBP78,DERF7, OsDERF7, OsERF#106, OsERF106, AP2/EREBP#111, AP2/EREBP111, OsERF106MZ, ERF106MZ,OsPLT8, CRL5, OsCRL5, AP2/EREBP141, AP2/EREBP#141 ,fzp*, fzp, OsBD1, BD1, OsERF#078, OsERF078, OsERF78, ERF78, AP2/EREBP#133, AP2/EREBP133, BFL1, SGDP7, OsSGDP7,OsPLT10, AP2/EREBP26, AP2/EREBP#026 ,OsERF#140, OsERF140, AP2/EREBP#013, AP2/EREBP13,AP2/EREBP#047,OsERF#013, OsERF013, OsERF13, AP2/EREBP#143, AP2/EREBP143,OsERF#016, OsERF016, OsERF16, AP2/EREBP#055, AP2/EREBP55,AP2/EREBP#079,AP2/EREBP#139,AP2/EREBP#086,AP2/EREBP#092,AP2/EREBP#031,AP2/EREBP#101,AP2/EREBP#068,AP2/EREBP#153,OsERF#138, OsERF138, AP2/EREBP#108, AP2/EREBP108,OsERF#084, OsERF084, OsERF84, OsDERF10, DERF10, AP2/EREBP#097, AP2/EREBP97,OsERF#089, OsERF089, OsERF89, AP2/EREBP#154, AP2/EREBP154,OsERF#113, OsERF113, AP2/EREBP#058, AP2/EREBP58,OsERF#120, OsERF120, AP2/EREBP#105, AP2/EREBP105,OsERF#122, OsERF122, AP2/EREBP#056, AP2/EREBP56,OsERF#125, OsERF125, AP2/EREBP#016, AP2/EREBP16,OsERF#128, OsERF128, AP2/EREBP#034, AP2/EREBP34,OsERF#129, OsERF129, AP2/EREBP#045, AP2/EREBP45,OsERF#080, OsERF080, OsERF80, AP2/EREBP#069, AP2/EREBP69,OsERF#085, OsERF085, OsERF85, AP2/EREBP#151, AP2/EREBP151, AP2/EREBP#062, AP2/EREBP62,DERF2, OsDERF2, OsERF#086, OsERF086, OsERF86, AP2/EREBP#074, AP2/EREBP74, OsERF1,OsERF#090, OsERF090, OsERF90, AP2/EREBP#071, AP2/EREBP71,OsPLT7, AP2/EREBP#088, AP2/EREBP88,OsERF#094, OsERF094, OsERF94, AP2/EREBP#039, AP2/EREBP39,OsERF#097, OsERF097, OsERF97, AP2/EREBP#038, AP2/EREBP38,OsPLT9, AP2/EREBP#137, AP2/EREBP137, OsANT,OsERF#018, OsERF018, OsERF18, AP2/EREBP#115, AP2/EREBP115,OsERF#019, OsERF019, OsERF19, AP2/EREBP#157, AP2/EREBP157,OsERF#095, OsERF095, OsERF95, AP2/EREBP#020, AP2/EREBP20, OsSta2, Sta2 ,AP2/EREBP#059, AP2-4,OsEREBP, OsERF#072, OsERF072, OsERF72, AP2/EREBP#064, AP2/EREBP64, BIERF1, OsBIERF1, OsEBP2,OsERF#021, OsERF021, OsERF21, AP2/EREBP#140, AP2/EREBP140,OsERF#023, OsERF023, OsERF23, AP2/EREBP#144, AP2/EREBP144,OsERF#036, OsERF036, OsERF36, AP2/EREBP#007, AP2/EREBP7,OsERF#037, OsERF037, OsERF37, AP2/EREBP#041, AP2/EREBP41,OsERF#039, OsERF039, OsERF39, AP2/EREBP#002, AP2/EREBP2,OsERF#043, OsERF043, OsERF43, AP2/EREBP#095, AP2/EREBP95,OsERF#045, OsERF045, OsERF45, AP2/EREBP#119, AP2/EREBP119,OsERF#049, OsERF049, OsERF49, AP2/EREBP#132, AP2/EREBP132,OsERF#054, OsERF054, OsERF54, AP2/EREBP#162, AP2/EREBP162,OsERF#055, OsERF055, OsERF55, AP2/EREBP#146, AP2/EREBP146,OsERF#056, OsERF056, OsERF56, AP2/EREBP#164, AP2/EREBP164,OsERF#136, OsERF136, AP2/EREBP#106, AP2/EREBP106, AP2-106,OsERF#022, OsERF022, OsERF22, AP2/EREBP#087, AP2/EREBP87,OsERF#123, OsERF123, AP2/EREBP#066, AP2/EREBP66,OsAP2, OsERF#108, OsERF108, AP2/EREBP#001, AP2/EREBP1, RD2,OsDREB1D, CBF4, ERF116, OsERF#116, OsERF116, AP2/EREBP#054, AP2/EREBP54, OsCbf1, OsCBF1,OsERF#071, OsERF071, OsERF71, AP2/EREBP#124, AP2/EREBP124, OsERF15,OsERF#134, OsERF134, AP2/EREBP#011, AP2/EREBP11, DLN46, OsDLN46,OsERF#132, OsERF132, AP2/EREBP#010, AP2/EREBP10, DLN41, OsDLN41,DERF12, OsDERF12, OsERF#096, OsERF096, OsERF96, AP2/EREBP#116, AP2/EREBP116, OsAP2, OsAP2.1, OsAP2.2, OsERF36,OsERF#008, OsERF008, OsERF8, AP2/EREBP#128, AP2/EREBP128, DLN123, OsDLN123,OsERF#020, OsERF020, OsERF20, AP2/EREBP#126, AP2/EREBP126, OsDREB1G,OsERF#076, OsERF076, OsERF76, AP2/EREBP#046, AP2/EREBP46, DLN126, OsDLN126,OsERF#074, OsERF074, OsERF74, AP2/EREBP#051, AP2/EREBP51, DLN152, OsDLN152,OsERF#119, OsERF119, AP2/EREBP#104, AP2/EREBP104, DLN161, OsDLN161,OsERF#121, OsERF121, AP2/EREBP#061, AP2/EREBP61, DLN174, OsDLN174,AP2/EREBP52, AP2/EREBP#052, ERF52, OsWRI3,OsERF#059, OsERF059, OsERF59, EBL1, AP2/EREBP#006, AP2/EREBP6,OsERF#032, OsERF032, OsERF32, AP2/EREBP#021, AP2/EREBP21, OsDREB2B,OsERF#057, OsERF057, OsERF57, AP2/EREBP#145, AP2/EREBP145, OsERF1, ERF1,Os06ERF, OsWR2, WR2, OsERF#001, OsERF001, OsERF1, AP2/EREBP#057, AP2/EREBP57, RD1, OsSHN, SHN,OsERF#017, OsERF017, OsERF17, AP2/EREBP#091, AP2/EREBP91,OsERF#052, OsERF052, OsERF52, ERF52, AP2/EREBP#053, AP2/EREBP53, OsRPH1, STG5, OsSTG5,ERF130, OsERF#130, OsERF130, AP2/EREBP#165, AP2/EREBP165, DLN151, OsDLN151,OsERF#141, OsERF141, AP2/EREBP#019, AP2/EREBP19,OsERF#047, OsERF047, OsERF47, AP2/EREBP#121, AP2/EREBP121,OsERF#109, OsERF109, AP2/EREBP#063, AP2/EREBP63, DLN223, OsDLN223,OsERF1, ERF1, OsERF#093, OsERF093, OsERF93, AP2/EREBP#168, AP2/EREBP168,OsEREBP1, OsERF#070, OsERF070, OsERF70, ERF70, AP2/EREBP#084, AP2/EREBP84,AP2/EREBP155, AP2/EREBP#155, OsWRI1-2, OsWRI1b, WRI1b,OsERF#066, OsERF066, OsERF66, AP2/EREBP#030, AP2/EREBP30, EREBP30,OsAP2-39, AP2-39, OsERF#077, OsERF077, OsERF77, AP2/EREBP#149, AP2/EREBP149, DLN121, OsDLN121,AP2/EREBP#022,AP2/EREBP#085, DRD1, OsDRD1, CHR730, OsCHR730,AP2/EREBP#077, OsRAV1, RAV1, OsRAV8, RAV8,AP2/EREBP#127, OsRAV11, RAV11, OsRAV1, RAV1,OsDREB2A, OsDREB2a, ERF40, OsERF#040, OsERF040, OsERF40, AP2/EREBP#167, AP2/EREBP167,AP2/EREBP#129, OsRAV2, RAV2, OsRAV9/OsTEM1, OsRAV9/OsTEM1, OsRAV9, OsTEM1, RAV9, TEM1,OsERF#069, OsERF069, OsERF69, AP2/EREBP#028, AP2/EREBP28, DLN77, OsDLN77, HINGE5, OsHINGE5,OsWR3, WR3, OsERF#127, OsERF127, AP2/EREBP#023, AP2/EREBP23, OsERF3, ERF3,AP2/EREBP#096, OsRAV12, RAV12, OsEREBP96, EREBP96,OsERF#087, OsERF087, OsERF87, AP2/EREBP#067, AP2/EREBP67,OsERF#041, OsERF041, OsERF41, AP2/EREBP#025, AP2/EREBP25, OsDREB2E,OsERF#110, OsERF110, AP2/EREBP#008, AP2/EREBP8, SKL2, OsSKL2, SKL2-1, SKL2-2, SKL2-1Nipponbare, SKL2-2C9285,OsERF#048, OsERF048, OsERF48, AP2/EREBP#170, AP2/EREBP170, OsDRAP1, DRAP1, OsERF48/OsDRAP1,OsERF#051, OsERF051, OsERF51, DERF11, OsDERF11, AP2/EREBP#156, AP2/EREBP156, RAP2-13, OsRAP2-13,ERF79, OsERF#079, OsERF079, OsERF79, AP2/EREBP#017, AP2/EREBP17, OsNDL1, DSP, OsDSP,AP2/EREBP#109, AP2/EREBP109, OsAP2/EREBP109, OsLFS,OsERF#068, OsERF068, OsERF68, AP2/EREBP#003, AP2/EREBP3, ERF2,OsERF#112, OsERF112, AP2/EREBP#009, AP2/EREBP9, SKL3, OsSKL3, SKL3-1, SKL3-2, SKL3-3, SKL3-1C9285, SKL3-2Nipponbare, SKL3-3C9285,OsERF#067, OsERF067, OsERF67, AP2/EREBP#076, AP2/EREBP76,AP2/EREBP131, AP2/EREBP#131, OsWRI1-1, OsWRI1a, WRI1a,AP2/EREBP#073, AP2/EREBP73, AP2-3, OsAP2-3, SSH1, OsSSH1, OsSNB, DLN181, DLN181a, DLN181b, OsDLN181, OsDLN181a, OsDLN181b, SUI4, OsSUI4, SUI4/SNB,OsERF#117, OsERF117, AP2/EREBP#150, AP2/EREBP150, OsABI4, ABI4,OsERF#058, OsERF058, OsERF58, AP2/EREBP#032, AP2/EREBP32, OsERF77, ERF77,OsERF#081, OsERF081, OsERF81, AP2/EREBP#014, AP2/EREBP14,OsERF#082, OsERF082, OsERF82, AP2/EREBP#035, AP2/EREBP35,OsERF#083, OsERF083, OsERF83, AP2/EREBP#163, AP2/EREBP163,OsERF#088, OsERF088, OsERF88, AP2/EREBP#024, AP2/EREBP24, OsAP23,OsERF#004, OsERF004, OsERF4, AP2/EREBP#159, AP2/EREBP159,OsERF#005, OsERF005, OsERF5, AP2/EREBP#072, AP2/EREBP72,OsERF#006, OsERF006, OsERF6, AP2/EREBP#075, AP2/EREBP75,OsERF#009, OsERF009, OsERF9, AP2/EREBP#135, AP2/EREBP135,OsERF#014, OsERF014, OsERF14, AP2/EREBP#103, AP2/EREBP103,OsERF#015, OsERF015, OsERF15, AP2/EREBP#102, AP2/EREBP102,OsERF#098, OsERF098, OsERF98, AP2/EREBP#120, AP2/EREBP120,OsERF#107, OsERF107, AP2/EREBP#015, AP2/EREBP15,OsERF#100, OsERF100, AP2/EREBP#036, AP2/EREBP36,OsERF#118, OsERF118, AP2/EREBP#117, AP2/EREBP117,OsERF#038, OsERF038, OsERF38, AP2/EREBP#082, AP2/EREBP82, OsDREB4-1,OsERF#053, OsERF053, OsERF53, AP2/EREBP#134, AP2/EREBP134,OsERF#034, OsERF034, OsERF34, AP2/EREBP#042, AP2/EREBP42,OsERF#064, OsERF064, OsERF64, AP2/EREBP#029, AP2/EREBP29, OsBIERF4, BIERF4,OsERF#012, OsERF012, OsERF12, OsDERF1, DERF1, AP2/EREBP#070, AP2/EREBP70,OsERF#105, OsERF105, AP2/EREBP#050, AP2/EREBP50,OsERF#007, OsERF007, OsERF7, AP2/EREBP#142, AP2/EREBP142, DLN158, OsDLN158,OsERF#033, OsERF033, OsERF33, AP2/EREBP#040, AP2/EREBP40, OsDREB4-2,OsERF#065, OsERF065, OsERF65, AP2/EREBP#107, AP2/EREBP107,OsDREB1E, OsERF030, OsERF#030, OsERF30, ERF30, AP2/EREBP#160, AP2/EREBP160, OsDREB1-1,DERF8, OsDERF8, OsERF#124, OsERF124, AP2/EREBP#158, AP2/EREBP158,OsPLT1, AP2/EREBP#044, AP2/EREBP44, AINTEGUMENTA, OsAINTEGUMENTA,Os02ERF, OsSHN1, OsWR1, WR1, OsERF#003, OsERF003, OsERF3, AP2/EREBP#012, AP2/EREBP12,OsERF#099, OsERF099, OsERF99, AP2/EREBP#080, AP2/EREBP80, OsEREBP2, EREBP2,OsERF#131, OsERF131, AP2/EREBP#094, AP2/EREBP94, SERF1, OsSERF1,OsDREB1C, CBF1, ERF26, OsERF026, OsERF#026, OsERF26, AP2/EREBP#098, AP2/EREBP98, OsCBF2, CBF2,OsERF#011, OsERF011, OsERF11, OsDERF9, DERF9, AP2/EREBP#083, AP2/EREBP83, DLN69, OsDLN69, ERF17_Ath,OsERF#133, OsERF133, AP2/EREBP#065, AP2/EREBP65, OsDREB1H, DREB1H, OsDREB1m, DREB1m,DERF3, OsDERF3, OsERF#104, OsERF104, AP2/EREBP#152, AP2/EREBP152, RAP2, OsRAP2,OsERF#091, OsERF091, OsERF91, AP59, OsAP59, AP2/EREBP#147, AP2/EREBP147, OsBIERF3, BIERF3,OsERF#035, OsERF035, OsERF35, AP2/EREBP#148, AP2/EREBP148, OsAP211, ARAG1, OsARAG1,DERF5, OsDERF5, OsERF#103, OsERF103, AP2/EREBP#130, AP2/EREBP130, OsERF109,OsWR4, WR4, OsERF#002, OsERF002, ERF002, OsERF2, AP2/EREBP#100, AP2/EREBP100,OsEBP-89, ebp-89, OsERF#060, OsERF060, OsERF60, ERF60, AP2/EREBP#027, AP2/EREBP27, OsEBP89, DLN76, OsDLN76,AP2/EREBP#090, AP2/EREBP90, OsTOE1, TOE1, qHD5, AP2-1, AP2/EREBP/RSR1, OsRSR1, DLN130, DLN130a, DLN130b, OsDLN130, OsDLN130a, OsDLN130b,OsERF#115, OsERF115, AP2/EREBP#110, AP2/EREBP110, OsEnS-123,OsERF#044, OsERF044, OsERF44, AP2/EREBP#112, AP2/EREBP112, OsDREB2C, DREB2C, OsEnS-124,Sub1C, OsSUB1C, OsERF#073, OsERF073, ERF073, OsERF73, ERF73, AP2/EREBP#122, AP2/EREBP122, SUB1B,OsERF#050, OsERF050, OsERF50, AP2/EREBP#113, AP2/EREBP113, OsDREB6, OsERF60, ERF60,OsERF#028, OsERF028, OsERF28, OsERF#029, OsERF029, OsERF29, ERF29, DERF4, OsDERF4, AP2/EREBP#161, AP2/EREBP161, OsDREB1J, OsDREB1I, OsDREB1G,OsERF#061, OsERF061, OsERF61, AP2/EREBP#093, AP2/EREBP93,Sub1B, OsSUB1B, OsERF#063, OsERF063, ERF063, OsERF63, ERF63, AP2/EREBP#166, AP2/EREBP166,OsERF#102, OsERF102, AP2/EREBP#123, AP2/EREBP123, OsEATB, EATB,OsERF#027, OsERF027, OsERF27, ERF27, AP2/EREBP#081, AP2/EREBP81, OsDREB1F,OsDREB1G, OsERF025, OsERF#025, OsERF25, ERF25, AP2/EREBP#138, AP2/EREBP138, OsDREB1I,AP37, OsAP37, OsERF3, OsERF#075, OsERF075, OsERF75, ERF75, AP2/EREBP#004, AP2/EREBP4, OsBIERF2, BIERF2, DLN23, OsDLN23,OsERF#042, OsERF042, OsERF42, AP2/EREBP#048, AP2/EREBP48, OsDREB2B, DREB2B, OsDREB2B2, OsDREB2A, DREB2A,OsERF#101, OsERF101, OsDERF6, DERF6, AP2/EREBP#089, AP2/EREBP89, OsRap2.6, Rap2.6, ERF113, OsERF113, OsERF101/OsRAP2.6,OsDREB1B, ERF31, OsERF031, OsERF#031, OsERF31, AP2/EREBP#169, AP2/EREBP169, OsDREB1b, OsDREB1C, OsCBF1, CBF1,OsIDS1, AP2/EREBP#033, AP2/EREBP33, AP2-33/IDS1, AP2-33, AP2-2, DLN104, OsDLN104,OsSHAT1, AP2/EREBP#043, AP2/EREBP43, AP2-5, DLN124, OsDLN124, ObSHAT1, OgSHAT1, OrSHAT1 ,OsERF#137, OsERF137, AP2/EREBP136, AP2/EREBP#136,OsPLT5, AP2/EREBP5, AP2/EREBP#005, BBM3, OsBBM3, BBM1, OsBBM1,OsPLT3, AP2/EREBP#018, AP2/EREBP18, BBM2, OsBBM2
34093	22215967	Hu L., Liu S.	Genome-wide identification and phylogenetic analysis of the ERF gene family in cucumbers.	Genet. Mol. Biol.	34(4)	624-33	2011	NGR5,ERF140,ERF144,ERF145,ERF143,ERF141	ERF142, OsERF#142, OsERF142, AP2/EREBP#049, AP2/EREBP49, SMOS1, OsSMOS1, SHB, OsAP2-EREBP-049, RLA1, RLA1/SMOS1, OsERF142/SMOS1, OsNGR5, GR5, OsGR5,OsERF#140, OsERF140, AP2/EREBP#013, AP2/EREBP13,OsERF#144, OsERF144,OsERF#145, OsERF145,OsERF#143, OsERF143,OsERF#141, OsERF141, AP2/EREBP#019, AP2/EREBP19
34094	18936491	Fukao T., Julia Bailey-Serres	submergence tolerance conferred by Sub1A is mediated by SLR1 and SLRL1 restriction of gibberellin responses in rice.	Proc. Natl. Acad. Sci. U.S.A.	105(43)	16814-9	2008	SUB1C,SUB1B,SLRL1,SLR1,SUB1A	Sub1C, OsSUB1C, OsERF#073, OsERF073, ERF073, OsERF73, ERF73, AP2/EREBP#122, AP2/EREBP122, SUB1B,Sub1B, OsSUB1B, OsERF#063, OsERF063, ERF063, OsERF63, ERF63, AP2/EREBP#166, AP2/EREBP166,OsSLRL1, OsGAI, OsSLRL, OsGRAS-1, OsGRAS1, GAI, SLRL, GRAS-1, GRAS1,slr1-1, slr1, slr, GAI, OsGAI, OsSLR1, Os SLR1, OsRGA1, OsGRAS-18, OsGRAS-18, GRAS-18, GRAS18, SLR-1,Sub1A, Sub1A-1, Sub1A-2, OsSUB1A
34095	17303594	Morita Y., KYOZUKA J.	Characterization of OsPID, the rice ortholog of PINOID, and its possible involvement in the control of polar auxin transport.	Plant Cell Physiol.	48(3)	540-9	2007	BIF2,AGC1	bif2, Osbif2, OsBIF2, OsPID, PID, OsAGC25, AGC25,OsPIDL, PIDL, OsAGC1
34096	12684786	Kato H., Sutoh K., Minamikawa T.	Identification, cDNA cloning and possible roles of seed-specific rice asparaginyl endopeptidase, REP-2.	Planta	217(4)	676-85	2003	REP1,REP2	REP-1, OsREP-1, OsREP1, OsSAG12-1, SAG12-1, OsEnS-21,OsVPE3, VPE3, OsREP-2, REP-2alpha, REP-2beta, OsaLeg2, aLeg2
34097	22408071	Zhou Y., Lu D., Li C., Luo J., Zhu B.F., Zhu J., Shangguan Y., Wang Z., Sang T., Zhou B., Han B.	Genetic Control of Seed SHATTERING in Rice by the APETALA2 transcription factor SHATTERING ABORTION1.	Plant Cell	24(3)	1034-48	2012	SHAT1	OsSHAT1, AP2/EREBP#043, AP2/EREBP43, AP2-5, DLN124, OsDLN124, ObSHAT1, OgSHAT1, OrSHAT1 
34098	16262715	Itoh H., Shimada A., Miyako Ueguchi-Tanaka, Kamiya N., Hasegawa Y., Ashikari M., Matsuoka M.	Overexpression of a GRAS protein lacking the DELLA domain confers altered gibberellin responses in rice.	Plant J.	44(4)	669-79	2005	SLR1,SLRL2,SLRL1	slr1-1, slr1, slr, GAI, OsGAI, OsSLR1, Os SLR1, OsRGA1, OsGRAS-18, OsGRAS-18, GRAS-18, GRAS18, SLR-1,OsSLRL2, OsGRAS-30, OsGRAS30, GRAS-30, GRAS30,OsSLRL1, OsGAI, OsSLRL, OsGRAS-1, OsGRAS1, GAI, SLRL, GRAS-1, GRAS1
34099	19665023	Xie G., Kato H., Sasaki K., Imai R.	A cold-induced thioredoxin h of rice, OsTrx23, negatively regulates kinase activities of OsMPK3 and OsMPK6 in vitro.	FEBS Lett.	583(17)	2734-8	2009	MSRMK2,TRX1,TRXH4,TRX15,TRXH8,TRX20,MPK6,TRXH5,TRX26,TRXH,PITA	OsMSRMK2, OsMAPK5, OsMAP1, OsMPK3, OsBIMK1, OsMAPK2, MPK5, BIMK1, MAPK2, MAPK5, MPK3, OsMPK5, OsMAPK3, OsMAPK5b, MAPK3,OsTRXh7, TRXh7, OsTrx1, Trx1, OsTrx01, Trx01,OsTRXh4, OsTrx10, Trx10, Os3, OsTrxh3,OsTrx15, Trx15,OsTRXh8, OsTrx18, Trx18, Os5, OsTrxh5,OsTRXh9, TRXH9, OsTrx20, Trx20,OsMPK6, OsDR6, DR6, OsMPK4, MPK4, OsMAPK4, MAPK4,OsTRXh5, OsTrx24, Trx24, Os4, OsTrxh4,OsTRXh3, TRXH3, OsTrx26, Trx26, antiSTR1, OsTDX, TDX,trxh, Trx-H, OsTRXh1, TRXh1, OsTrxh1, Os1, OsTrx23, Trx23, RPP13-1,Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30, Trx30
34100	17449649	Xue-Cheng Zhang, Wu X., Findley S., Wan J., Libault M., Henry T Nguyen, Steven B Cannon, Stacey G.	Molecular evolution of lysin motif-type receptor-like kinases in plants.	Plant Physiol.	144(2)	623-36	2007	LYK5,LYK2,LYK1,LYK3,LYK6,LYK4	OsLysM-RLK2, LysM-RLK2, OsLYK5, OsNFR5, NFR5, OsMYR1/OsLYK2, OsMYR1, OsLYK2, MYR1, LYK2, NFR5/MYR1,OsLysM-RLK5, LysM-RLK5, OsLYK2,OsLysM-RLK3, LysM-RLK3, OsLYK,OsLysM-RLK6, LysM-RLK6, OsLYK3,OsLysM-RLK7, LysM-RLK7, OsLYK6,OsLysM-RLK1, LysM-RLK1, OsLYK4, OsNFR5/OsRLK2, OsNFR5, NFR5, OsRLK2, RLK2
34103	22576235	Myint K.M., Arikit S., Wanchana S., Yoshihashi T., Choowongkomon K., Vanavichit A.	A PCR-based marker for a locus conferring the aroma in Myanmar rice (Oryza sativa L.).	Theor. Appl. Genet.			2012	SK2(T)(SCL, FGR)	sk2(t)(scl, fgr), fgr, scl, BAD2, BADH2, sk2, OsBADH2, Badh2, badh2, Os2AP, BADH-2, OsALDH10A8, ALDH10A8 
34104	22570445	Kobayashi K., Yasuno N., Sato Y., Yoda M., Yamazaki R., Kimizu M., Yoshida H., Nagamura Y., Kyozuka J.	inflorescence meristem Identity in Rice Is Specified by Overlapping Functions of Three AP1/FUL-Like MADS Box Genes and PAP2, a SEPALLATA MADS Box Gene.	Plant Cell	24(5)	1848-59	2012	HD3A,MADS18,PAP2,RAP1B,RAP1A	Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,OsMADS18, MADS2, OsMADS2, MADS28, OsMADS28, FDRMADS7, OsMADS18/28,MADS34, OsMADS34, RMADS212/RMADS217/RMADS221, OsPAP2/MADS34, MADS34/PAP2, PAP2/OsMADS34, OsMADS34/PAP2, OsMADS19,MADS14, OsMADS14, FDRMADS6, RMADS211, AGL10,OsMADS15, FDRMADS3, RMADS215, MADS15, DEP
34105	22641204	Olsen K.M.	One gene's shattering effects.	Nat. Genet.	44(6)	616-7	2012	SH1	YAB2, OsYAB2, OsSh1, Sh1, OsFIL2, OsSH1, Osh1
34106	22558386	Ye M., Luo S.M., Xie J.F., Li Y.F., Xu T., Liu Y., Song Y.Y., Zhu-Salzman K., Zeng R.S.	silencing COI1 in rice increases susceptibility to chewing insects and impairs inducible defense.	PLoS ONE	7(4)	e36214	2012	COI1	OsCOI1a, OsCOI1, Os_F0728, COI1a, F0728,  OsFBL4, FBL4
34107	22685166	Tong H., Liu L., Jin Y., Du L., Yin Y., Qian Q., Zhu L., Chu C.	DWARF AND LOW-TILLERING Acts as a Direct Downstream Target of a GSK3/SHAGGY-like kinase to Mediate Brassinosteroid Responses in Rice.	Plant Cell	24(6)	2562-77	2012	BRD1,BZR1,SKETHA,DLT,GSK1,BIN2,D11,D2,D61	brd1, OsDWARF, DWARF, OsBR6ox, BR6ox, CYP85A1, CYP85A4, OsDWF, CYP85A1/OsDWARF, OsBRD1, OsCYP85A1,OsBZR1, Os BZR1, OsBES1-6, BES1-6,GSK4, Os GSK4, OsGSK4, OsSKetha, OsSKETHA, OsSK24/OsGSK8, OsSK24, OsGSK8, SK24, GSK8,dlt, OsGRAS32, OsDLT, OsDLT1, DTL1, OsGRAS-32, OsGRAS32, GRAS-32, GRAS32, SMOS2/DLT, SMOS2, OsSMOS2, OsGS6, GS6,Os GSK1, OsGSK1, OsSK21/OsGSK1, OsSK21, SK21,GSK2, Os GSK2, OsGSK2, Os BIN2, OsBIN2, BIN2/GSK2, OsSK22/OsGSK7, OsSK22, OsGSK7, SK22, GSK7, OsSK22/GSK2 ,d11(d8), dwf10, d8, D11/CYP724B1, d11, CYP724B1, GNS4, OsD11, PMM1, OsPMM1, PMM1/D11, NBG4, OsCPB1, CPB1, CPB1/D11,d2, dwf2, CYP90D2, D2/CYP90D2, OsD2, SMG11, OsSMG11, D2/SMG11, OsD2a, OsD2b,d61*, dwf42, d61, OsBRI1, OSBRI1, BRI1, Os BRI1, Osbri1, OsBRKq1, BRKq1
34109	22644768	Zhao C., Xu J., Chen Y., Mao C., Zhang S., Bai Y., Jiang D., Wu P.	Molecular cloning and characterization of OsCHR4, a rice chromatin-remodeling factor required for early chloroplast development in adaxial mesophyll.	Planta	236(4)	1165-76	2012	RFS	rfs, cul7, OsRFS, OsCHR729, CHR729, CHR4, OsCHR4, CRL6, OsCRL, OsCHR4/CHR729, PKR1, OsPHD32, PHD32
34110	22525239	Li Y., Feng D., Zhang D., Su J., Zhang Y., Li Z., Mu P., Liu B., Wang H., Wang J.	Rice MAPK phosphatase IBR5 negatively regulates drought stress tolerance in transgenic Nicotiana tabacum.	Plant Sci.	188-189	10-8	2012	_	OsIBR5, IBR5, OsPP85
34112	22649273	Sun S., Gu M., Cao Y., Huang X., Zhang X., Ai P., Zhao J., Fan X., Xu G.	A Constitutive Expressed Phosphate Transporter, OsPht1;1, Modulates Phosphate Uptake and Translocation in Phosphate-Replete Rice.	Plant Physiol.	159(4)	1571-81	2012	PT1,LTN1,PHR2	OsPT1, PHT1-1, OsPht1;1, Pht1;1, OsPHT1;1, PHT1;1,LTN1, OsPHO2, PHO2.1, PHO2.2, PHO2, OsUBC35, UBC35,OsPHR2, Os-PHR2
34113	22653607	Yan J.J., Zhang Y.B., Ding Y.	Binding mechanism between Hsp90 and Sgt1 explored by homology modeling and molecular dynamics simulations in rice.	J Mol Model	18(10)	4665-73	2012	HSP90,SGT1	OsHsp90, rHSP90, OsHSP90, GRP94, OsGRP94,OsSgt1, OsSGT1, Os SGT1
34114	22551250	Akkinepalli H., Ereful N., Liu Y., Malabanan K., Howells R., Stamati K., Powell W., Leung H., Greenland A., Mackay I., Lee D.	Snapshots of gene expression in rice: limitations for allelic expression imbalance determination.	Genome	55(5)	400-6	2012		
34115	22551450	Redillas M.C., Jeong J.S., Kim Y.S., Jung H., Bang S.W., Choi Y.D., Ha S.H., Reuzeau C., Kim J.K.	The overexpression of OsNAC9 alters the root architecture of rice plants enhancing drought resistance and grain yield under field conditions.	Plant Biotechnol. J.	10(7)	792-805	2012	ONAC2	SNAC1, snac1, OsNAC9, ONAC002, ONAC2, ONAC033, ONAC33, ONAC043, ONAC43, ONAC044, ONAC44, OsNAC19, NAC19, SNAC1/ONAC002, OsSNAC1, OsNAC9, OsNAC1
34117	22644442	Kumar R., Mustafiz A., Sahoo K.K., Sharma V., Samanta S., Sopory S.K., Pareek A., Singla-Pareek SL.	Functional screening of cDNA library from a salt tolerant rice genotype Pokkali identifies mannose-1-phosphate guanyl transferase gene (OsMPG1) as a key member of salinity stress response.	Plant Mol. Biol.	79(6)	555-68	2012	MPG2,MPG4,MPG3,MPG1	OsMPG2,OsMPG4, OsVTC1-8, VTC1-8,OsMPG3, OsVTC1-3, VTC1-3,OsMPG1, OsVTC1-1, VTC1-1
34119	22623516	Waters M.T., Brewer P.B., Bussell J.D., Smith S.M., Beveridge C.A.	The Arabidopsis Ortholog of Rice DWARF27 Acts Upstream of MAX1 in the Control of Plant Development by Strigolactones.	Plant Physiol.	159(3)	1073-85	2012		
34120	22583826	Bao Y.M., Sun S.J., Li M., Li L., Cao W.L., Luo J., Tang H.J., Huang J., Wang Z.F., Wang J.F., Zhang H.S.	Overexpression of the Qc-SNARE gene OsSYP71 enhances tolerance to oxidative stress and resistance to rice blast in rice (Oryza sativa L.).	Gene	504(2)	238-44	2012	_,_,_,_,_,_,_,_,_,_,_,SYP71	OsSYP72,OsBET11,OsBET12,OsSYP51,OsSYP52,OsSYP61,OsSYP62,OsUSE11,OsUSE12,OsSFT11,OsSFT12,OsSYP71
34121	22655071	Wang H., Wu Z., Han J., Zheng W., Yang C.	Comparison of ion balance and nitrogen metabolism in old and young leaves of alkali-stressed rice plants.	PLoS ONE	7(5)	e37817	2012	NRT1,HKT4,GLN1;1,SOS2,AMT2;2,AMT3;3,AMT1;3,HAK10,HTNE,AMT2;1,AMT2;3,GDH2,AMT3;1,PTR6,HKT6,ASN,NHX3,GS2,AMT1;2,LCS,PSR1,AKT1,_,HAK7,HAK16,HAK4,AMT3;2,SOS3,SOS1,GDH3,GDH1,HKT1,GLT2,GLN1;3,NHX1,AMT1;1,GLT1,GLN1;2,SKC1,ABC1	OsNRT1, OsNRT1;1, OsNRT1.1, OsNRT1.1a, OsNRT1.1b, NRT1.1, NRT1.1a, NRT1.1b, OsNPF8.9, NPF8.9 , OsNRT1.1B,OsHKT4, OsHKT1;1, HKT1;1, OsHKT2, RNC4, OsHKT1;1-FL, OsHKT1;1-V1, OsHKT1;1-V2, OsHKT1;1-V3, OsHKT1;1-V4, OsHKT1;1-V5, OsHKT1;1-V6, OsHKT1;1-V7, OsHKT1;1-V8,OsGLN1;1, GS1, RGS28, OsGS1;1, GS1;1, OsGS, GS1, OsGS1, GLN1-1, OsGS1-1, GS1-1, GS1.1, OsGS1.1,CIPK24, OsCIPK24, OsSOS2, OsSnRK3.22, SnRK3.22,OsAMT2;2, AMT2;2, OsAMT2.2,OsAMT3;3, AMT3;3, OsAMT3.3,OsAMT1;3, AMT1-3, Osamt1-2, "OsAMT1,2", OsAMT1;2, OsAMT1.3, AMT1.2,OsHAK10,NRT2.3, OsNRT2.3, OsNRT2;1, OsNRT2.3a, OsNRT2.3b, OsNRT2;3a, OsNRT2.5 ,OsAMT2;1, AMT2-1, OsAMT2.1, AMT2.1,OsAMT2;3, AMT2;3, OsAMT2.3,OsGDH2,OsAMT3;1, AMT3-1, OsAMT3.1, OsAMT2;2,OsPTR6, OsNRT1;2, NRT1;2, OsNPF7.3, NPF7.3 ,OsHKT6, OsHKT1;3, HKT1;3, OsHKT1;3_FL, OsHKT1;3_V1, OsHKT1;3_V2, OsHKT1;3_V3, OsHKT1;3_V4, OsHKT1;3_V5,OsASN2, OsAS, OsAS2, AS2,OsNHX3, OsNHX2, NHX2,OsGS2, GLN2, OsGLN2, RGS31, OsRGS31,OsAMT1;2, AMT1-2, Osamt1-3, "OsAMT1,3", OsAMT1;3, OsAMT1.3, OsAMT1.2, AMT1.2,OsHAK1, HAK1,PSR1, NiR, OsNiR, OsNIR1, NIR1, FD-NiR, OsNiR2,OsAKT1, Os-AKT1,OsNR1, NR1, nia1, OsNIA1, NIA1, OsNIA2, NIA2,OsHAK7,OsHAK16,OsHAK4,AMT3;2, OsAMT3;2, OsAMT3.2,CBL4, OsCBL4, OsSOS3,OsSOS1, OsNHA1, NHA1, SOS1/NHX7, NHX7, OsNHX7,OsGDH3,OsGDH1,OsHKT1, OsHKT2;1, HKT2;1, Ni (Nipponbare)-OsHKT1, Po (Pokkali)-HKT1, OsHKT1;1, HKT1;1,OsGLT2, OsNADH-GOGAT2, NADH-GOGAT2, OsGOGAT2, GOGAT2, OsGLU2, GLU2,OsGLN1;3, OsGS1;3, GS1;3,OsNHX1, OcNHX1, OgNHX1, OrNHX1, OpNHX1, ObNHX1,OsAMT1;1, OsAMT1:1, OsAMT1, AMT1-1, AMT1, OsAMT1p, OsAMT1-1, Osamt1-1, "OsAMT1,1", OsAMT1.1, AMT1.1, FCO12,OsGLT1, OsNADH-GOGAT1, NADH-GOGAT1, OsNADH-GOGAT, GOGAT, NADH-GOGAT, OsGOGAT1, GOGAT1, OsGLU1,OsGLN1;2, GSr, RGS8, OsGS1;2, GS1;2, GS1, OsGS1-2, GS1-2, OsGS1.2, GS1.2,OsHKT8, HKT8, Os-HKT1;5, OsHKT1;5, HKT1;5, SKC1, qSKC-1(t), OsSKC1,OsABC1, SPL32, OsSPL32, OsGLU, OsFd-GOGAT, Fd-GOGAT, ABC1/ OsFd-GOGAT 
34122	22642989	Choi J., Lee J., Kim K., Cho M., Ryu H., An G., Hwang I.	Functional Identification of OsHk6 as a Homotypic cytokinin receptor in Rice with Preferential Affinity for iP.	Plant Cell Physiol.	53(7)	1334-43	2012	CKT1,HK5,HK3,HK4	OHK5, HK, OsHK6, HK6, Crl1a, Ohk5, OsHK1, OsCKT1 ,OHK3, HK, OsHK5, Crl3, Ohk3, OsHK2,OHK2, HK, OsHK3, Ohk, Crl2, Ohk2, OsHK3b, OsHK03,OHK4, HK, OsHK4, Crl1b, Ohk4
34123	22519706	Tong X., Qi J., Zhu X., Mao B., Zeng L., Wang B., Li Q., Zhou G., Xu X., Lou Y., He Z.	The rice hydroperoxide lyase OsHPL3 functions in defense responses by modulating the oxylipin pathway.	Plant J.	71(5)	763-75	2012	HPL3	OsHPL3, CYP74B2, OsCYP74B2
34124	22531935	Gaur V.S., Singh U.S., Gupta A.K., Kumar A.	Influence of different nitrogen inputs on the members of ammonium transporter and glutamine synthetase genes in two rice genotypes having differential responsiveness to nitrogen.	Mol. Biol. Rep.	39(8)	8035-44	2012	AMT2;1,AMT1;2,AMT3;1,AMT1;1,AMT3;2,AMT2;2,GLN1;1,AMT2;3,GLN1;2,AMT1;3	OsAMT2;1, AMT2-1, OsAMT2.1, AMT2.1,OsAMT1;2, AMT1-2, Osamt1-3, "OsAMT1,3", OsAMT1;3, OsAMT1.3, OsAMT1.2, AMT1.2,OsAMT3;1, AMT3-1, OsAMT3.1, OsAMT2;2,OsAMT1;1, OsAMT1:1, OsAMT1, AMT1-1, AMT1, OsAMT1p, OsAMT1-1, Osamt1-1, "OsAMT1,1", OsAMT1.1, AMT1.1, FCO12,AMT3;2, OsAMT3;2, OsAMT3.2,OsAMT2;2, AMT2;2, OsAMT2.2,OsGLN1;1, GS1, RGS28, OsGS1;1, GS1;1, OsGS, GS1, OsGS1, GLN1-1, OsGS1-1, GS1-1, GS1.1, OsGS1.1,OsAMT2;3, AMT2;3, OsAMT2.3,OsGLN1;2, GSr, RGS8, OsGS1;2, GS1;2, GS1, OsGS1-2, GS1-2, OsGS1.2, GS1.2,OsAMT1;3, AMT1-3, Osamt1-2, "OsAMT1,2", OsAMT1;2, OsAMT1.3, AMT1.2
34125	22581231	Lin Z., Li X., Shannon L.M., Yeh C.T., Wang M.L., Bai G., Peng Z., Li J., Trick H.N., Clemente T.E., Doebley J., Schnable P.S., Tuinstra M.R., Tesso T.T., White F., Yu J.	Parallel domestication of the Shattering1 genes in cereals.	Nat. Genet.	44(6)	720-4	2012	SH1	YAB2, OsYAB2, OsSh1, Sh1, OsFIL2, OsSH1, Osh1
34126	22794914	Chen H., Chen W., Zhou J., He H., Chen L., Chen H., Deng X.W.	Basic leucine zipper transcription factor OsbZIP16 positively regulates drought resistance in rice.	Plant Sci.	193-194	8-17	2012	BZIP16	OsbZIP16, OsSTA51
34127	22572927	Zhang C., Zhang F., Zhou J., Fan Z., Chen F., Ma H., Xie X.	Overexpression of a phytochrome-regulated tandem zinc finger protein gene, OsTZF1, confers hypersensitivity to ABA and hyposensitivity to red light and far-red light in rice seedlings.	Plant Cell Rep.	31(7)	1333-43	2012	C3H35	OsC3H35, OsTZF1, OsCCCH-Zn-3
34128	22582989	Abu-Zaitoon YM., Bennett K., Normanly J., Nonhebel H.M.	A large increase in IAA during development of rice grains correlates with the expression of tryptophan aminotransferase OsTAR1 and a grain-specific YUCCA.	Physiol Plant	146(4)	487-99	2012	YUCCA11,TYDC,YUCCA9,TDC1,YUCCA12,TDC2,YUCCA3,YUCCA14,TAR1,FIB	OsYUCCA11, OsYUC11, YUC11,TyDC, OsTyDC, OsTYDC, TDC, OsTDC3, TDC3, OsTDC1,OsYUCCA9, OsYUC9, YUC9,OsTDC, TDC, TDC2, OsTDC1, OsTDC4,OsYUCCA12, OsYUC12, YUC12,OsTDC2, OsTDC3,OsYUCCA3, OsYUC3, YUC3,OsYUCCA14, OsYUC14,OsTAR1, FBL,fib, OsFIB, OsTAR2, TAR2, TSG1, OsTSG1, OsTAA1, TAA1
34129	22643902	Yang Z., Bai Z., Li X., Wang P., Wu Q., Yang L., Li L., Li X.	SNP identification and allelic-specific PCR markers development for TaGW2, a gene linked to wheat kernel weight.	Theor. Appl. Genet.	125(5)	1057-68	2012	GW2	OsGW2, OsRING429, RING429, GNL44, OsGNL44
34130	22529386	Yang D.L., Yao J., Mei C.S., Tong X.H., Zeng L.J., Li Q., Xiao L.T., Sun T.P., Li J., Deng X.W., Lee C.M., Thomashow M.F., Yang Y., He Z., He S.Y.	Plant hormone jasmonate prioritizes defense over growth by interfering with gibberellin signaling cascade.	Proc. Natl. Acad. Sci. U.S.A.	109(19)	E1192-200	2012	SLR1,EUI1,COI1,COI1B	slr1-1, slr1, slr, GAI, OsGAI, OsSLR1, Os SLR1, OsRGA1, OsGRAS-18, OsGRAS-18, GRAS-18, GRAS18, SLR-1,eui1, GA16,17ox, CYP714D1, EUI, CYP714D1/EUI, OsEUI, LG5, OsLG5,OsCOI1a, OsCOI1, Os_F0728, COI1a, F0728,  OsFBL4, FBL4,OsCOI1b, COI1b, OsCOI1H, COI1H, OsFbox260, Fbox260, Os_F0646,  OsFBL23, FBL23, OsCOl-1, COl-1
34131	22608525	Kitomi Y., Inahashi H., Takehisa H., Sato Y., Inukai Y.	OsIAA13-mediated auxin signaling is involved in lateral root initiation in rice.	Plant Sci.	190	116-22	2012	IAA13	OsIAA13, OsIAA1, OsiIAA1
34132	22592958	Shen W.J., Ruan X.L., Li X.S., Zhao Q., Li H.P.	RNA silencing suppressor Pns11 of rice gall dwarf virus induces virus-like symptoms in transgenic rice.	Arch. Virol.	157(8)	1531-9	2012	MIR167D,MIR167E,MIR167F,MIR167C,ARF8,MIR162B,MIR167B,MIR168A,MIR167A,MIR167G,MIR167H,MIR167I,MIR167J	miR167d, osa-miRNA167d, osa-miR167d, osa-miR167d-3p, osa-miR167d-5p,miR167e, osa-miR167e, osa-miRNA167e osa-miR167e-3p osa-miR167e-5p,miR167f, osa-miR167f, osa-miRNA167f ,miR167c, osa-miR167cosa-miR167c-3p osa-miR167c-5p,OsARF8, OsARF12, ARF12,miR162b, osa-miR162b, osa-MIR162b ,miR167b, osa-miR167b,miR168a, osa-miR168a, osa-MIR168a osa-miR168a-3p osa-miR168a-5p, OsMIR168a,miR167a, osa-miR167aosa-miR167a-3p osa-miR167a-5p, OsmiR167a,miR167g, osa-miR167g, osa-miRNA167g ,miR167h, osa-miR167h, osa-MIR167hosa-miR167h-3p osa-miR167h-5p,miR167i, osa-miR167iosa-miR167i-3p osa-miR167i-5p,miR167j, osa-miR167j, osa-MIR167j
34133	22569963	Luo D., Niu X., Yu J., Yan J., Gou X., Lu B.R., Liu Y.	Rice choline monooxygenase (OsCMO) protein functions in enhancing glycine betaine biosynthesis in transgenic tobacco but does not accumulate in rice (Oryza sativa L. ssp. japonica).	Plant Cell Rep.	31(9)	1625-35	2012	_	OsCMO
34135	22731699	Zhang Y., Xu Y.H., Yi H.Y., Gong J.M.	Vacuolar membrane transporters OsVIT1 and OsVIT2 modulate iron translocation between flag leaves and seeds in rice.	Plant J.	72(3)	400-10.	2012	VIT1,VIT1;2	OsVIT2, OsVIT1, VIT2, ,OsVIT1;2, OsVIT1
34136	22694163	Li R., Afsheen S., Xin Z., Han X., Lou Y.	OsNPR1 negatively regulates herbivore-induced JA and ethylene signaling and plant resistance to a chewing herbivore in rice.	Physiol Plant	147(3)	340-51	2012	NH1	OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2, DLN5, OsDLN5,  OsBTBA1, BTBA1
34138	22745421	von Caemmerer S., Quick W.P., Furbank R.T.	The development of C? rice: current progress and future challenges.	Science	336(6089)	1671-2	2012		
34139	22717673	Park Y.H., Choi C., Park E.M., Kim H.S., Park H.J., Bae S.C., Ahn I., Kim M.G., Park S.R., Hwang D.J.	Over-expression of Rice leucine-rich repeat protein results in activation of defense response, thereby enhancing resistance to bacterial soft rot in Chinese cabbage.	Plant Cell Rep.	31(10)	1845-50	2012	_	OsLRP, OsLRR1, LRR1
34141	22665444	Wu B., Zhang B., Dai Y., Zhang L., Shang-Guan K., Peng Y., Zhou Y., Zhu Z.	Brittle culm15 encodes a membrane-associated chitinase-like protein required for cellulose biosynthesis in rice.	Plant Physiol.	159(4)	1440-52	2012	CESA7,BC6,BC1,BC12,BC14,BC3,CESA6,BC15,BC10,CESA1,CESA5,BC7,CESA2,CESA3,CESA8	OsCesA7, OsCESA7, OS_CESA07, OsCesA 7, CesA7,Bc6*, Bc6, OsCesA9, CESA9, OsCESA9, OS_CESA09, OsCesA 9, CesA9, BC88, SDBC1, OsSDBC1,bc1, bc-1, OsBC1, CWA1, FP1, OsPCS3, PCS3,bc12, gdd, GDD1, BC12/GDD1, OsGDD1, OsBC12/GDD1, OsBC12, LGW, OsLGW,OsBC14, OsNST1, NST1,bc3, bc-3, OsDRP2B, DRP2B,OsCesA6, OsCESA6, OS_CESA06,OsCTL1, CHIT13, OsCHIT13,BC10, bc10, FC116, FC116/BC10, Osbc10, Osfc116,OsCesA1, OsCesA-1, OsCESA1, OS_CESA01, CesA1,OsCesA5, OsCESA5, OS_CESA05,OsCesA4, OsCESA4, CESA4, OS_CESA04, BC11, bc7t, Bc7(t), bc-7, OsCesA 4, CesA4, FC17/CESA4, FC17, OsFC17,OsCesA2, OsCESA2, OS_CESA02,OsCesA3, OsCESA3, OS_CESA03,OsCesA8, OsCESA8, OS_CESA08, CesA8
34142	22751314	Yen Hsu Y., Chao Y.Y., Huei Kao C.	Biliverdin-promoted lateral root formation is mediated through heme oxygenase in rice.	Plant Signal Behav	7(7)	885-7	2012	SE5	Se5, OsHO1, OsHO-1, OsHY1, HO-1, HO1, OsSE5, YGL2, YGL2/HO1
34143	22723425	Dagdas Y.F., Yoshino K., Dagdas G., Ryder L.S., Bielska E., Steinberg G., Talbot N.J.	Septin-mediated plant cell invasion by the rice blast fungus, Magnaporthe oryzae.	Science	336(6088)	1590-5	2012		
34145	22686276	Ribeiro C.W., Carvalho F.E., Rosa S.B., Alves-Ferreira M., Andrade C.M., Ribeiro-Alves M., Silveira J.A., Margis R., Margis-Pinheiro M.	Modulation of genes related to specific metabolic pathways in response to cytosolic ascorbate peroxidase knockdown in rice plants.	Plant Biol (Stuttg)	14(6)	944-55	2012	APX2,APX1	OsAPX2, OsAPx02, APXb, OsAPx2, OSAPX2, APx2, cAPX, OsAPX1, APX1,OsAPX1, APXa, OsAPXa, OsAPx01, OsAPx1, OSAPX1, APx1, cAPX, APX2, cAPXa, OscAPXa
34146	22735448	Park C.J., Ronald P.C.	Cleavage and nuclear localization of the rice XA21 immune receptor.	Nat Commun	3	920	2012	WRKY62,XA21	OsWRKY62, OsWRKY62.1, OsWRKY62.2, XB10, OsWRKY62-1, OsWRKY62-2,Xa21*, Xa21, OsXA21
34147	22729225	Wang S., Wu K., Yuan Q., Liu X., Liu Z., Lin X., Zeng R., Zhu H., Dong G., Qian Q., Zhang G., Fu X.	Control of grain size, shape and quality by OsSPL16 in rice.	Nat. Genet.	44(8)	950-4	2012	LK3,GW8	lk3(t), lk3(t)*, SG3, GS3, SG3-GS3, OsGW3, OsGS3, RGG3/GS3/Mi/OsGGC1, RGG3, Mi, OsGGC1, GGC1, OsSYL3, SYL3, TT2, OsTT2,SPL16, OsSPL16, SLP1, OsSLP1, qGW8, OsGW8
34148	22705026	Jung C.G., Lim S.D., Hwang S.G., Jang C.S.	Molecular characterization and concerted evolution of two genes encoding RING-C2 type proteins in rice.	Gene	505(1)	9-18	2012	_,_	OsRINGC2-2,  OsRING307, RING307,OsRINGC2-1, RINGC2-1
34149	22688271	Xu J., Li M., Chen L., Wu G., Li H.	Rapid generation of rice mutants via the dominant negative suppression of the mismatch repair protein OsPMS1.	Theor. Appl. Genet.	125(5)	975-86	2012	_,MLH1	OsPMS1, OsPMS2,OsMLH1
34150	22688121	Mahanty S., Kaul T., Pandey P., Reddy R.A., Mallikarjuna G., Reddy C.S., Sopory S.K., Reddy M.K.	Biochemical and molecular analyses of copper-zinc superoxide dismutase from a C(4) plant Pennisetum glaucum reveals an adaptive role in response to oxidative stress.	Gene	505(2)	309-17	2012	SOD2,SOD4,SODCC1,SODCC2	OsSOD2, OsSOD2-Cu/Zn, SOD2-Cu/Zn, OsCSD3, CSD3, CuZnSOD3, OsCSD2, CSD2, Cu/Zn-SOD2,OsSOD4, OsCSD4, OsCu/Zn-SOD1, Cu/Zn-SOD1, OsCSD2, CSD2, OsSOD4-Cu/Zn, SOD4-Cu/Zn, Cu/ZnSOD3, CuZnSOD3, sodCp, OssodCp, OsCu/ZnSOD3, CuZnSOD2, OsSOD1,sodCc1, SODCC.1, sodA, RSODA, OsSOD1, OsCSD2, OsSodA, SodCc2, OsSODA1, SODCc1-Cu/Zn, OsCu/Zn-SOD2, Cu/Zn-SOD2, OsCSD1.2, CSD1.2, OsSODCc1-Cu/Zn, SODCc1-Cu/Zn, CuZnSOD1, Cu/ZnSOD1, OsCu/ZnSOD1, OsCSD4, CDS4, CuZnSOD4, OsCuZnSOD1, OsCSD1, CSD1, OsSOD2,Cu/Zn-SOD, Cu/Zn- SOD, OsCu-ZnSOD2, Cu-ZnSOD2, OsSODB, OsSOD3, SodCc2, Os SodCc2, sodB, OsSodB, RSODB, OssodCc1, OsCSD1.1, CSD1.1, OsCDS1, OsSOD3-CU/Zn, SOD3-CU/Zn, CuZnSOD2, Cu/ZnSOD2, OsCu/ZnSOD2, OsCSD1, CSD1, CuZnSOD1, OsCuZnSOD2, OsCSD4, CSD4, OsCSD3, CSD3, Cu/Zn-SOD3
34151	22849582	Shen Y., Zhang W., Liu X., Chen L., Liu S., Zheng L., Li J., Chen Y., Wu T., Yu Y., Zhong Z., Jiang L., Wan J.	Identification of two stably expressed QTLs for fat content in rice (Oryza sativa).	Genome	55(8)	585-90	2012		
34152	22803610	Wang C., Huang W., Ying Y., Li S., Secco D., Tyerman S., Whelan J., Shou H.	Functional characterization of the rice SPX-MFS family reveals a key role of OsSPX-mfs1 in controlling phosphate homeostasis in leaves.	New Phytol.	196(1)	139-48	2012	SPX-MFS3,SPX-MFS4,miR827,SPX-MFS2 ,SPX-MFS1,PHR2	OsSPX-MFS3,OsSPX-MFS4,miR827a, OsmiR827a, miR827, osa-miR827, osa-MIR827, OsMiR827, miR827b, osa-miR827b, osa-MIR827b,OsSPX-MFS2,OsSPX-MFS1,OsPHR2, Os-PHR2
34153	22856514	Kesawat M.S., Das B.K., Bhaganagare G.R., Manorama	Genome-wide identification, evolutionary and expression analyses of putative Fe-S biogenesis genes in rice (Oryza sativa).	Genome	55(8)	571-83	2012	MDR10,ISC42,ISC8,ISC5,ISC22,ISC6,ABCI3_1,ABCI4,ABCI5,ABCA2,MDR5,MDR9,MDR8,ABCB9,ISC1,ISC26,ISC2,ISC3,ISC4,ISC44,ISC35,ISC37,ISC12,ISC39,ISC11,ISC13,ISC14,ISC15,ISC19,ISC20,ISC21,ISC9,ISC38,ISC41,ISC7,ISC36,ISC43,ISC10,ISC23,ABCB23,HSP58.7,ISC24,MDR7,ISC40	OsABCB8, ABCB8, OsPGP8, OsMDR10, OsISC29,OsISC42,OsISC8,OsISC5,OsISC22,OsISC6,OsABCI3_1, OsABCI3_2, OsISC17,OsABCI4, OsISC18,OsABCI5, OsISC16,OsABCA2, OsISC27,OsABCB3, ABCB3, OsPGP3, OsMDR5, OsISC34,OsABCB4, ABCB4, OsPGP4, OsMDR9, OsISC30,OsABCB6, ABCB6, OsPGP6, OsMDR8, OsISC31,OsABCB9, OsPGP9, OsISC33,OsISC1,OsDjC80, OsISC26,OsISC2,OsISC3,OsISC4,OsISC44,OsISC35,OsISC37,OsISC12,OsISC39,OsISC11,OsISC13,OsISC14,OsISC15,OsISC19,OsISC20,OsISC21,OsISC9,OsISC38,OsISC41,OsISC7,OsISC36,OsISC43,OsISC10,OsISC23,OsABCB23, OsISC32, OsATM3, ATM3,OsHsp58.7, OsHSP58.7, OsISC25, ISC25,OsISC24, HSP70, OsHSP70,MDR4, OsABCB5, ABCB5, OsPGP5, OsMDR7, OsISC28, MRP4, OsMRP4, OsABCB11, ABCB11, MR7, OsMR7,OsISC40
34155	22773748	Hong Y.F., Ho T.H., Wu C.F., Ho S.L., Yeh R.H., Lu C.A., Chen P.W., Yu L.C., Chao A., Yu S.M.	Convergent Starvation Signals and Hormone Crosstalk in Regulating Nutrient Mobilization upon Germination in Cereals.	Plant Cell	24(7)	2857-73	2012	GAMYB,MYBS1	OsGAMYB, GAM1, OsGAMyb, Os-MYBGA, Os GAMYB, OsMYBGA, MYBGA, Os2R_MYB15, 2R_MYB15 ,OsMYBS1, Os-MYBS1, Mybs1
34156	22785493	Pitakrattananukool S., Kawakatsu T., Anuntalabhochai S., Takaiwa F.	Overexpression of <i>OsRab7B3</i>, a Small GTP-Binding Protein Gene, Enhances leaf senescence in Transgenic Rice.	Biosci. Biotechnol. Biochem.	76(7)	1296-302	2012	_,_,_,_,RGP1,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,RGP2,_,_,_,_,_,_,_,_,RAB8A2,_,RAB7A1,RAB7A2,GLUP4,RAB11C1,RAB11A2,RAB2A2,RAB7B1,RAB7B2,RAB7B3,_	OsRab11G2,OsRab18A1,OsRab18B1,OsRab11E1,rgp1, OsRab11E2,OsRab11F2,OsRab11G1,OsRab1A2,OsRab1B1,OsRab5C1,OsRab5D1,OsRab8A1,OsRab8A5, OsRab8a,OsRab8B1,OsRab11A1,OsRab11B2,OsRab11C2,OsRab11D2,OsRab11D3,OsRab1C1,OsRab1C3, OsRab1,OsRab2A1, OsRab2,OsRab8A3,OsRab11C3,rgp2, OsRab11B1,OsRab18B2, Q10RT8,OsRab2B1,OsRab11F1, OsPRA2, PRA2, OsPra2 ,OsRab6A1, Rab6A1,OsRab1B2, OsRas1,OsRab5B1, Rab5c, OsRab5c ,OsRab5A2, Rab5A2,OsRab5A1, OsRab5b, Rab5b,OsRab8A2,OsRab6B2, Rab6B2, OsRab6a, Rab6a,OsRab7A1,OsRab7A2,glup4(esp8), esp8, glup4, OsRab5B2, Rab5a, OsRab5a, GPA1/Rab5a, GPA, GLUP4/Rab5, GLUP4/Rab5a, GPA1, OsGPA1,OsRab11C1,OsRab11A2, Rab11A2, RABA2a, OsRABA2a,OsRab2A2, Rab2B,OsRab7B1, Rab7B1, OsRab7,OsRab7B2,OsRab7B3, Rab7B3, OsRab7, Rab7,OsRab11D1, OsRab11, Rab11, ric2
34157	22859682	Song S., Dai X., Zhang W.H.	A rice F-box gene, OsFbx352, is involved in glucose-delayed seed germination in rice.	J. Exp. Bot.	63(15)	5559-68	2012	NCED1,ABA8OX3,NCED2,FBOX516,ABA8OX2	OSNCED1, OsNCED-1, OsNCED3, OsNced3, NCED3, OsNCED9, NCED9,OsABA8OX3, OsABA8ox3, CYP707A7, OsCYP707A7, OsAba-ox3, OsABA8ox3, OsABA8'ox3, ABA8'ox3, OsABAX3, ABAX3, OsABA8'OH3, ABA8'OH3,OsNCED2, OsNced2, OsCCD4b, CCD4b, OsCCD4c, CCD4c,OsFbx352, OsFbox516, Fbx352, Fbox516, Os_F0046,  OsFBX352, FBX352,OsABA8OX2, OsABA8ox2, CYP707A6, OsCYP707A6, OsAba-ox2, OsABA8ox2, OsABA8OH2, ABA8OH2, ABA8'-OH2, OsABA8'ox2, ABA8'ox2, OsABAX2, ABAX2, OsABA8'OH2, ABA8'OH2
34158	22805094	Tian J., Wang C., Zhang Q., He X., Whelan J., Shou H.	Overexpression of OsPAP10a, A Root-Associated acid phosphatase, Increased Extracellular Organic Phosphorus Utilization in Rice.	J Integr Plant Biol	54(9)	631-9	2012	PHR2,PAP10B,PAP10D,PAP26,PAP10C,PAP10A	OsPHR2, Os-PHR2,OsPAP10b,OsPAP10d,OsPAP26,OsPAP10c,OsPAP10a, PAP10, OsPAP2, PAP2
34159	22790320	Paul P., Awasthi A., Kumar S., Verma S.K., Prasad R., Dhaliwal H.S.	Development of multiple embryos in polyembryonic insertional mutant OsPE of rice.	Plant Cell Rep.	31(10)	1779-87	2012	_	OsPE
34160	22786887	Singh R., Lee M.O., Lee J.E., Choi J.H., Park J.H., Yoo R.H., Cho J.I., Jeon J.S., Rakwal R., Agrawal G.K., Moon J.S., Jwa N.S.	Rice MAPK interactome analysis using yeast two-hybrid system.	Plant Physiol.	160(1)	477-87	2012		
34161	22780875	Kumar G., Kushwaha H.R., Panjabi-Sabharwal V., Kumari S., Joshi R., Karan R., Mittal S., Singla-Pareek SL., Pareek A.	Clustered metallothionein genes are co-regulated in rice and ectopic expression of OsMT1e-P confers multiple abiotic stress tolerance in tobacco via ROS scavenging.	BMC Plant Biol.	12(1)	107	2012	MT2D,MT1F,MTI4B,MTI3A,MTII1A,MTI2B,MTI1B,MTI4C,MT2B,MT1G,MT2A,MTI4A,MTI1A	OsMT2d,OsMT1f, OsMT1c, MT1f, MT1c, MT1Lb, OsMT1Lb ,OsMT1c, MT1c, OsMT-I-4b, MT-I-4b, OsMT1f, MT1f, MT1Lc, OsMT1Lc ,OsMT3a, MT3a, OsMT-I-3a, MT-I-3a, MTe, met2, OsMT3, MT3, OsMTI-3a, MTI-3a,OsMT4, OsMT-II-1a, MT4, MT-II-1a,OsMT2c, OsMT-I-2b, MT2c, MT-I-2b, MTc, met5, ricMT, OsMT2,OsMT1b, MT1b, OsMT-I-1b, OsMTI-1b, MT-I-1b, MTI-1b, MT1La, OsMT1La, OsMT1,MT-1-4b, OsMT1d, MT1d, OsMT-I-4c, MT1c, OsMT1c,OsMT2b, MT2b, OsMT-I-2c, MT-I-2c, MT2C, MT2BL, OsMT2C, OsMT2BL, MTE, OsMT2b1, OsMT2b2, MT2b1, MT2b2, MTb, met1, OsMTe, OsMT-I-2c, OsB22EL8, MTe, MT-I-2c, B22EL8,OsMT1g, MT1g, MT1Le, OsMT1Le ,OsMT2a, MT2a, met6, Osmet6, OsMT-2, MT-2, rgMT-2, OsMT-I-2a, OsMT2-1, MT-I-2a, MT2-1,OsMT1a, OsMT1a1, OsMT1a2, OsMT-I-4a, OsIDS1, OsMT1b, MT1b,MT1a, OsMT1a, OsMT1e, OsMT-I-1a, MT-I-1a, OsMT1e-P, MTa, rgMT, OsMT-1, rgMT-1
34162	22534193	Jiamsomboon K., Treesuwan W., Boonyalai N.	Dissecting substrate specificity of two rice BADH isoforms: Enzyme kinetics, docking and molecular dynamics simulation studies.	Biochimie	94(8)	1773-83	2012	SK2(T)(SCL, FGR),BAD1	sk2(t)(scl, fgr), fgr, scl, BAD2, BADH2, sk2, OsBADH2, Badh2, badh2, Os2AP, BADH-2, OsALDH10A8, ALDH10A8 ,Badh1, badh1, BAD1, BADH1, OsBADH1, BADH, OsALDH10A5, ALDH10A5 
34163	22807445	Reinders A., Sun Y., Karvonen K.L., Ward J.M.	Identification of amino acids important for substrate specificity in sucrose transporters using gene shuffling.	J. Biol. Chem.	287(36)	30296-304	2012	SUT1	OsSUT1, OsSUT2
34164	22793791	Chepyshko H., Lai C.P., Huang L.M., Liu J.H., Shaw J.F.	Multifunctionality and diversity of GDSL esterase/lipase gene family in rice (Oryza sativa L. japonica) genome: new insights from bioinformatics analysis.	BMC Genomics	13	309	2012	GELP35,GELP115,GELP42,GELP52,GELP75,GELP82,GELP89,GELP96,GELP112,GELP64,GELP70,GELP71,GELP72,GELP73,GELP74,GELP76,GELP79,GELP80,GELP83,GELP28,GELP1,GELP2,GELP3,GELP4,GELP5,GELP6,GELP78,GELP81,GELP103,GELP77,GELP45,GELP7,GELP8,GELP9,GELP10,GELP11,GELP14,GELP15,GELP16,GELP13,GELP17,GELP18,GELP19,GELP20,GELP21,GELP22,GELP23,GELP24,GELP25,GELP26,GELP27,GELP29,GELP30,GELP31,GELP32,GELP33,GELP36,GELP37,GELP40,GELP38,GELP39,GELP41,GELP43,GELP44,GELP46,GELP47,GELP51,GELP53,GELP54,GELP55,GELP56,GELP57,GELP58,GELP60,GELP63,GELP65,GELP61,GELP66,GELP67,GELP68,GELP69,GELP84,GELP85,GELP86,GELP87,GELP88,GELP90,GELP91,GELP93,GELP94,GELP95,GELP97,GELP98,GELP99,GELP100,GELP101,GELP102,GELP105,GELP106,GELP108,GELP109,GELP107,GELP111,GELP113,GELP114,GELP59,GELP12,GELP92,GELP48,GELP62,RMS2,GELP110,GELP49,GELP50,GELP104	OsGELP35,OsGELP115,OsGELP42,OsGELP52,OsGELP75, OsGELP75a, OsGELP75b, OsGELP75c,OsGELP82,OsGELP89,OsGELP96, OsGELP96a, OsGELP96b,OsGELP112, WDL1,OsGELP64, OsGELP64a, OsGELP64b, MHZ11, OsMHZ11,OsGELP70,OsGELP71,OsGELP72,OsGELP73,OsGELP74,OsGELP76,OsGELP79,OsGELP80,OsGELP83, OsGELP83a, OsGELP83b,OsGELP28,OsGELP1, OsEST1,OsGELP2, OsGELP2a, OsGELP2b,OsGELP3, OsGELP3a, OsGELP3b,OsGELP4,OsGELP5, OsGELP5a, OsGELP5b,OsGELP6,OsGELP78, OsEnS-82, EnS-82, OsGLIP2, GLIP2,OsGELP81,OsGELP103,OsGELP77, OsGELP77a, OsGELP77b,OsGELP45, OsGELP45a, OsGELP45b,OsGELP7,OsGELP8,OsGELP9,OsGELP10,OsGELP11,OsGELP14,OsGELP15, OsGELP15a, OsGELP15b, OsGELP15c,OsGELP16, OsGELP16a, OsGELP16b,OsGELP13,OsGELP17,OsGELP18, OsGELP18a, OsGELP18b,OsGELP19,OsGELP20, OsGELP20a, OsGELP20b, OsGELP20c,OsGELP21, OsGELP21a, OsGELP21b, OsGELP21c,OsGELP22,OsGELP23,OsGELP24,OsGELP25,OsGELP26,OsGELP27,OsGELP29,OsGELP30,OsGELP31,OsGELP32,OsGELP33, OsGELP33a, OsGELP33b, OsGELP33c,OsGELP36,OsGELP37,OsGELP40,OsGELP38,OsGELP39,OsGELP41,OsGELP43,OsGELP44, OsGELP44a, OsGELP44b,OsGELP46, OsGELP46a, OsGELP46b,OsGELP47,OsGELP51,OsGELP53,OsGELP54,OsGELP55, OsGELP55a, OsGELP55b,OsGELP56,OsGELP57,OsGELP58, OsGELP58a, OsGELP58b, OsGELP58c, OsGELP58d,OsGELP60,OsGELP63,OsGELP65,OsGELP61,OsGELP66,OsGELP67, OsGELP67a, OsGELP67b,OsGELP68,OsGELP69,OsGELP84,OsGELP85,OsGELP86,OsGELP87,OsGELP88,OsGELP90,OsGELP91,OsGELP93,OsGELP94, OsGELP94a, OsGELP94b,OsGELP95,OsGELP97, OsGELP97a, OsGELP97b,OsGELP98, OsGELP98a, OsGELP98b,OsGELP99,OsGELP100, OsGELP100a, OsGELP100b,OsGELP101,OsGELP102,OsGELP105,OsGELP106,OsGELP108,OsGELP109,OsGELP107,OsGELP111,OsGELP113,OsGELP114, OsGELP114a, OsGELP114b,OsGELP59, RMP7,OsGELP12, OsGELP12a, OsGELP12b, OsGELP12c,OsGELP92, OsGELP92a, OsGELP92b, OsGELP92c, AChE,OsGELP48,OsGELP62, OsGELP62a, OsGELP62b, OsGELP62c, DARX1, OsDARX1,OsGELP34, GELP34, OsRMS2,OsGELP110,OsGELP49, HTA1, OsHTA1,OsGELP50, OsGELP50a, OsGELP50b,OsGELP104
34165	22846038	Bian H., Xie Y., Guo F., Han N., Ma S., Zeng Z., Wang J., Yang Y., Zhu M.	Distinctive expression patterns and roles of the miRNA393/TIR1 homolog module in regulating flag leaf inclination and primary and crown root growth in rice (Oryza sativa).	New Phytol.	196(1)	149-61.	2012	MIR393B,FBOX206,IAA1,TIR1,MIR393	OsmiR393b, miR393b, osa-MIR393bosa-miR393b osa-miR393b-3p osa-miR393b-5p,OsAFB2, ABF2, OsAFB2-1, OsAFB2-2, OsFbox206, Os_F0492, OsTIR1, TIR1,  OsFBL16, FBL16,OsIAA1, OsIAA4,OsTIR1, OsFbox248, Fbox248, Os_F071, AFB,  OsFBL21, FBL21,OsmiR393, osa-MIR393, osa-MIR393a, OsmiR393a, miR393a 
34166	22778444	Chodavarapu R.K., Feng S., Ding B., Simon S.A., Lopez D., Jia Y., Wang G.L., Meyers B.C., Jacobsen S.E., Pellegrini M.	Transcriptome and methylome interactions in rice hybrids.	Proc. Natl. Acad. Sci. U.S.A.	109(30)	12040-5	2012		
34167	22755510	Wang L., Ying Y., Narsai R., Ye L., Zheng L., Tian J., Whelan J., Shou H.	Identification of OsbHLH133 as a regulator of iron distribution between roots and shoots in Oryza sativa.	Plant Cell Environ.	36(1)	224-36.	2012	IRT2,_,IRT1,ENA1,YSL15,MTN,APT1,MTK1,IDI4,DEP,MIR,NAS2,VIT1;2,BHLH63,NAS3,FRDL1,YSL2,NAAT1,SAMS2,TOM1,NRAMP1,BHLH133,IRO2,DMAS1,NAS1,STAR1	OsIRT2, OsIRT1, OsZIP15, ZIP15,OsRPI, RPI,OsIRT1, ZIP10, OsZIP10, OsZIP12, ZIP12,OsENA1,OsYSL15, OsYs7,OsMTN,OsAPT1, APRT,OsMTK, OsMTK1, MTK,OsIDI4,OsDEP,OsMIR,OsNAS2, OsNAS1,OsVIT1;2, OsVIT1,OsIRO3, IRO3, OsbHLH063, bHLH063, bHLH63,OsNAS3,OsFRDL1,OsYSL2, Os-YSL2, OsYs6 ,OsNAAT1,OsSAM2, SAM2, OsSAMS2, OS-SAMS2,OsTOM1, ZIFL4, OsZIFL4 ,OsNramp1, OsNRAMP1, OsNramp6,OsbHLH133, bHLH133, OsRSL8, RSL8,OsIRO2, OsbHLH056, bHLH056, bHLH56, OsbHLH56,OsDMAS1, OsAKR5, AKR5,OsNAS1,OsENA2, OsABCI12, ENA2, ABCI12, OsSTAR1, OsSATR1
34169	21059694	Yong-Sheng Yan, Xiao-Ying Chen, Yang K., Zong-Xiu Sun, Ya-Ping Fu, Yu-Man Zhang, Rong-Xiang Fang	Overexpression of an F-box protein gene reduces abiotic stress tolerance and promotes root growth in rice.	Mol Plant	4(1)	190-7	2011	_	MAIF1, OsFbox104, Os_F0528,  OsFBDUF13, FBDUF13
34170	21825104	Fukuda M., Satoh-Cruz M., Wen L., Crofts A.J., Sugino A., Washida H., Okita T.W., Ogawa M., Kawagoe Y., Maeshima M., Kumamaru T.	The small GTPase Rab5a is essential for intracellular transport of proglutelin from the Golgi apparatus to the protein storage vacuole and endosomal membrane organization in developing rice endosperm.	Plant Physiol.	157(2)	632-44	2011	GLUP4,VSR3,ESP2,BIP1	glup4(esp8), esp8, glup4, OsRab5B2, Rab5a, OsRab5a, GPA1/Rab5a, GPA, GLUP4/Rab5, GLUP4/Rab5a, GPA1, OsGPA1,VSR3, OsVSR3, OsVSR5, VSR5,esp2(rsp2), rsp2, esp2, PDIL1-1,OsBiP1, BiP1, BiP, Bip3, OsBiP3, BIP1/OsBIP3, OsMed37_2, Med37_2 
34171	14657402	Matsumoto N., Hirano T., Iwasaki T., Yamamoto N.	Functional analysis and intracellular localization of rice cryptochromes.	Plant Physiol.	133(4)	1494-503	2003	CRY1A,CRY1B	OsCRY1a, OsCRY1, CRY1a, CRY2, OsCCT1a, CCT1a,OsCRY1b, OsCRY2, CRY1b, CRY1, OsCCT1b, CCT1b
34172	0	Inoue H., Mizuno D., Takahashi M., Nakanishi H., Mori S., Nishizawa N.K	A Rice FRD3-Like (OsFRDL1) Gene Is Expressed in the Cells Involved in Long-Distance Transport	Soil Sci. Plant Nutr.	50(7)	1133-1140	2004	FRDL1,_,_	OsFRDL1,OsFRDL2,OsFRDL3
34173	19825552	Peng Y., Laura E Bartley, Chen X., Dardick C., Chern M., Ruan R., Patrick E Canlas, Pamela C Ronald	OsWRKY62 is a negative regulator of basal and Xa21-mediated defense against Xanthomonas oryzae pv. oryzae in rice.	Mol Plant	1(3)	446-58	2008	WRKY62,XA21	OsWRKY62, OsWRKY62.1, OsWRKY62.2, XB10, OsWRKY62-1, OsWRKY62-2,Xa21*, Xa21, OsXA21
34174	20385831	Chen X., Chern M., Patrick E Canlas, Ruan D., Jiang C., Pamela C Ronald	An ATPase promotes autophosphorylation of the pattern recognition receptor XA21 and inhibits XA21-mediated immunity.	Proc. Natl. Acad. Sci. U.S.A.	107(17)	8029-34	2010	XA21,XB24	Xa21*, Xa21, OsXA21,XB24
34175	20590657	Chang-Jin Park, Sang-Wook Han, Chen X., Pamela C Ronald	Elucidation of Xa21-mediated innate immunity.	Cell. Microbiol.	12(8)	1017-25	2010	WRKY62,XB24,XB3,XB15,XA21	OsWRKY62, OsWRKY62.1, OsWRKY62.2, XB10, OsWRKY62-1, OsWRKY62-2,XB24,Xb3,  OsRING223, RING223,XB15, OsPP2C35, PP2C35, OsPP59, SIP35 ,Xa21*, Xa21, OsXA21
34176	20174657	Chang-Jin Park, Bart R., Chern M., Patrick E Canlas, Bai W., Pamela C Ronald	Overexpression of the endoplasmic reticulum chaperone BiP3 regulates XA21-mediated innate immunity in rice.	PLoS ONE	5(2)	e9262	2010	D61,XA21,BIP1	d61*, dwf42, d61, OsBRI1, OSBRI1, BRI1, Os BRI1, Osbri1, OsBRKq1, BRKq1,Xa21*, Xa21, OsXA21,OsBiP1, BiP1, BiP, Bip3, OsBiP3, BIP1/OsBIP3, OsMed37_2, Med37_2 
34177	20149131	Liu F., Wang Z., Ren H., Shen C., Li Y., Hong-Qing Ling, Wu C., Lian X., WU P.	OsSPX1 suppresses the function of OsPHR2 in the regulation of expression of OsPT2 and phosphate homeostasis in shoots of rice.	Plant J.	62(3)	508-17	2010	PT2,SPX1,PHR2,LTN1	OsPT2, PTH1-2, OsPht1;2, PHT1;2, OsPHT1;2,OsSPX1,OsPHR2, Os-PHR2,LTN1, OsPHO2, PHO2.1, PHO2.2, PHO2, OsUBC35, UBC35
34178	22897567	Duan Y., Li S., Chen Z., Zheng L., Diao Z., Zhou Y., Lan T., Guan H., Pan R., Xue Y., Wu W.	Dwarf and Deformed Flower 1, encoding an F-box protein, is critical for vegetative and floral development in rice (Oryza sativa L.).	Plant J.	72(5)	829-42	2012	DDF1,RAN2,EXPA2,_,MADS4,SPW1,DL,XTH11,RFL	OsDDF1,OsRAN2,OsEXP2, OsEXP2(Os-EXP2), Os-EXP2, EXPA2, OsEXPA2, OsaEXPa1.23, RiExB, RiExC, Os-EXPA2,H4,OsMADS4, PI1, DLN140, OsDLN140,SPW1, spw1, MADS16, OsMADS16,OsDL, dl(lop), lop, dl, dl1, OsDRPq3, DRPq3,OsXTH11, XTR2, OsXTR2, Meri-5,RFL, OSL, FL, APO2, APO2/RFL, SSC, SSC/RFL/APO2, OsRFL, OsFL, OsAPO2, OsSSC
34179	22874758	Yu Q., Beyer P.	Reaction specificities of the epsilon-ionone-forming lycopene cyclase from rice (Oryza sativa) elucidated in vitro.	FEBS Lett.	586(19)	3415-20	2012	LYCE,LCYB	OsLCYe, OsLCYepsilon, LCYepsilon, epsilon-LCY, OsLYCE,OsLCYbeta, OsLYCb, OsLCY, beta-OsLCY, beta-LCY
34180	22872757	Liu B., Li J.F., Ao Y., Qu J., Li Z., Su J., Zhang Y., Liu J., Feng D., Qi K., He Y., Wang J., Wang H.B.	Lysin Motif-Containing Proteins LYP4 and LYP6 Play Dual Roles in Peptidoglycan and Chitin Perception in Rice Innate Immunity.	Plant Cell	24(8)	3406-19	2012	_,_,_,_,LYP6,CERK1,CEBIP	LYP2, Os-LYP2,LYP3, Os-LYP3,LYP5, Os-LYP5,LYP4, Os-LYP4, OsLYP4,Os-LYP6, OsLYP6,OsCERK1, OsLysM-RLK9, Os-CERK1, Os-LysM-RLK9, OsLysMRLK9, OsCERK1/OsLYK9, OsLYK9, LYK9,CEBiP, Os-LYP1, LYP1, OsCEBiP
34181	22882529	Zhang Q., Li J., Zhang W., Yan S., Wang R., Zhao J., Li Y., Qi Z., Sun Z., Zhu Z.	The putative auxin efflux carrier OsPIN3t is involved in the drought stress response and drought tolerance.	Plant J.	72(5)	805-16	2012	PIN10A,PIN1B,LRA1	PIN3A, OsPIN3a, OsPIN3t, OsPIN10a, OsPIN3,PIN1A, OsPIN1A, OsPIN1a, REH1, OsPIN1, OsPIN1b, REH1/OsPIN1,OsPIN2, PIN2, OsLRA1, WAR1, OsWAR1
34182	22913536	Shen C., Wang S., Zhang S., Xu Y., Qian Q., Qi Y., Jiang D.A.	osarf16, a transcription factor, is required for auxin and phosphate starvation response in rice (Oryza sativa L.).	Plant Cell Environ.	36(3)	607-20	2013	PHR2,ARF16	OsPHR2, Os-PHR2,OsARF16
34183	22878205	Momma M., Fujimoto Z.	Interdomain Disulfide Bridge in the Rice Granule Bound Starch Synthase I Catalytic Domain as Elucidated by X-Ray Structure Analysis.	Biosci. Biotechnol. Biochem.	76(8)	1591-5	2012	WX1	wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx
34184	22904148	Steffens B., Kovalev A., Gorb S.N., Sauter M.	Emerging Roots Alter Epidermal Cell Fate through Mechanical and Reactive Oxygen Species Signaling.	Plant Cell	24(8)	3296-306	2012	CRL1,MT2B	crl1, crl1*, ARL1, ARL1/CRL1, OsLBD3-2, LBD3-2, OsCRL1,OsMT2b, MT2b, OsMT-I-2c, MT-I-2c, MT2C, MT2BL, OsMT2C, OsMT2BL, MTE, OsMT2b1, OsMT2b2, MT2b1, MT2b2, MTb, met1, OsMTe, OsMT-I-2c, OsB22EL8, MTe, MT-I-2c, B22EL8
34185	22888153	Zhao S.Q., Xiang J.J., Xue H.W.	Studies on the Rice Leaf INCLINATION1 (LC1), an IAA-amido Synthetase, Reveal the Effects of Auxin in Leaf Inclination Control.	Mol Plant	6(1)	174-87	2013	LC1	OsGH3-1, GH3-1, OsGH3.1,GH3.1, OsLC1
34186	22889013	Zhang H., Zhai J., Mo J., Li D., Song F.	Overexpression of Rice Sphingosine-1-Phoshpate Lyase Gene OsSPL1 in Transgenic Tobacco Reduces Salt and oxidative stress Tolerance.	J Integr Plant Biol	54(9)	652-62	2012	SPL1	OsSPL1
34187	22912900	Zhao J., Huang X., Ouyang X., Chen W., Du A., Zhu L., Wang S., Deng X.W., Li S.	OsELF3-1, an Ortholog of Arabidopsis EARLY FLOWERING 3, Regulates Rice Circadian Rhythm and Photoperiodic Flowering.	PLoS ONE	7(8)	e43705	2012	HD2,_,PRR95,PRR59,CCA1,GHD7,HD3B,PRR73,TOC1	Hd2(t), Hd2, qHD2(t), OsPRR37, Os-PRR37, PRR37, Prr4, OsPRR4, DTH7, Os DTH7, OsCCT28, CCT28, Ghd7.1, PRR37/Hd2, EH7-2, EH7-2/Hd2, Hd2/PRR37, PRR37-1a, PRR37-1b, PRR37-1c, PRR37-2a, PRR37- 2, HD7.2,OsELF3-2, OsEF3,OsPRR95, Os-PRR95, Prr2, OsPRR2, OsCCT33,OsPRR59, Os-PRR59, Prr5, OsPRR5, OsCCT38, CCT38,OsCCA1, OsLHY, LHY, LHY-like_chr.8, COC1, DLN203, OsDLN203, LEM1, OsLEM1, Nhd1, OsNhd1,Ghd2, Ghd7, OsGhd7, OsCCT26, OsCMF8, OsI, Ghd7/Hd4, Hd4, EH7-1/Hd4, Ghd7-0a, EH7-1, EH7/Ghd7, EH7, OsEH7, GLW7.1, OsGLW7.1,Hd17, EF7, Ef7, OsELF3-1, ELF3-1, OsELF3, ELF3, ELF3_chr.6, OsELF3.1, ELF3.1, OsELF3a, ELF3a,OsPRR73, Os-PRR73, Prr3, OsPRR3, OsRRA20, OsCCT11, CCT11,OsTOC1, OsPRR1, Os-PRR1, PRR1, OsRRA21, OsCCT07
34188	22892321	Sun C., Fang J., Zhao T., Xu B., Zhang F., Liu L., Tang J., Zhang G., Deng X., Chen F., Qian Q., Cao X., Chu C.	The histone methyltransferase SDG724 Mediates H3K36me2/3 Deposition at MADS50 and RFT1 and Promotes Flowering in Rice.	Plant Cell	24(8)	3235-47	2012	HD3A,SDG736,SDG708,SDG725,MADS51,MADS50,LVP1,EHD2/RID1,RFT1,GHD7,GI,SE1,SE5	Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,SDG736, OsSET9,SDG708,OsSDG725, OsSET8, ASHH2,OsMADS51, OsMADS65, MADS65, qHd1, DLN36, OsDLN36,OsMADS50, AGL20, SOC1, OsSOC1, RMADS208, OsSOC1/ OsMADS50/DTH3, DTH3, OsDTH3,SDG724, OsSDG724, OsLVP1, OsSET34,Ehd2, RID1, OsID1, ID1, OsId1, OsID, Ehd2/RID1/OsId1, RID1/OsID1/Ehd2,FT-L 3, OsFTL3, FTL3, FT-L3, RFT, OsRFT1,Ghd2, Ghd7, OsGhd7, OsCCT26, OsCMF8, OsI, Ghd7/Hd4, Hd4, EH7-1/Hd4, Ghd7-0a, EH7-1, EH7/Ghd7, EH7, OsEH7, GLW7.1, OsGLW7.1,OsGI, Gi, Os-GI,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, OsHd1,  Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,Se5, OsHO1, OsHO-1, OsHY1, HO-1, HO1, OsSE5, YGL2, YGL2/HO1
34189	22894565	LIU X., Luo M., Zhang W., ZHAO J., Zhang J., Wu K., Tian L., Duan J.	Histone acetyltransferases in rice (Oryza sativa L.): phylogenetic analysis, subcellular localization and expression.	BMC Plant Biol.	12(1)	145	2012	HAG704,HAC701,HAM701,HAC703,HAF701,HAG702,HAC704,HAG703	OsHAG704,OsHAC701, OsKIX_1, OsHAC5,OsHAM701, OsMOF, MOF,OsHAC703, OsKIX_2, OsHAC1,OsHAF701, OsBrd7, Brd7,OsHAG702, GCN5, OsGCN5, OsBrd10, Brd10,OsHAC704, OsKIX_4, OsHAC12 ,OsHAG703, OsELP3, ELP3
34190	22888152	Yang Y., Peng Q., Chen G.X., Li X.H., Wu C.Y.	OsELF3 is Involved in Circadian Clock Regulation for Promoting Flowering under Long-Day Conditions in Rice.	Mol Plant	6(1)	202-15	2013	GI,PRR73,RFT1,TOC1,PRR95,ZTL1,HD3A,GHD7,CCA1,PRR59,HD3B,PHYB,SE1,HD2	OsGI, Gi, Os-GI,OsPRR73, Os-PRR73, Prr3, OsPRR3, OsRRA20, OsCCT11, CCT11,FT-L 3, OsFTL3, FTL3, FT-L3, RFT, OsRFT1,OsTOC1, OsPRR1, Os-PRR1, PRR1, OsRRA21, OsCCT07,OsPRR95, Os-PRR95, Prr2, OsPRR2, OsCCT33,OsZTL1, OsFbox066, OsFbox66, Os_F0484, OsLKP2, LKP2,  OsFBO8, FBO8,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,Ghd2, Ghd7, OsGhd7, OsCCT26, OsCMF8, OsI, Ghd7/Hd4, Hd4, EH7-1/Hd4, Ghd7-0a, EH7-1, EH7/Ghd7, EH7, OsEH7, GLW7.1, OsGLW7.1,OsCCA1, OsLHY, LHY, LHY-like_chr.8, COC1, DLN203, OsDLN203, LEM1, OsLEM1, Nhd1, OsNhd1,OsPRR59, Os-PRR59, Prr5, OsPRR5, OsCCT38, CCT38,Hd17, EF7, Ef7, OsELF3-1, ELF3-1, OsELF3, ELF3, ELF3_chr.6, OsELF3.1, ELF3.1, OsELF3a, ELF3a,phyB, PHYB1, OsPHYB, OsphyB, OsYHB, YHB, OsPHYB/OsYHB,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, OsHd1,  Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,Hd2(t), Hd2, qHD2(t), OsPRR37, Os-PRR37, PRR37, Prr4, OsPRR4, DTH7, Os DTH7, OsCCT28, CCT28, Ghd7.1, PRR37/Hd2, EH7-2, EH7-2/Hd2, Hd2/PRR37, PRR37-1a, PRR37-1b, PRR37-1c, PRR37-2a, PRR37- 2, HD7.2
34191	22882555	Ma X., Cheng Z., Qin R., Qiu Y., Heng Y., Yang H., Ren Y., Wang X., Bi J., Ma X., Zhang X., Wang J., Lei C., Guo X., Wang J., Wu F., Jiang L., Wang H., Wan J.	OsARG encodes an arginase that plays critical roles in panicle development and grain production in rice.	Plant J.	73(2)	190-200	2013	NGLF	OsARG, ARG, Nglf, Nglf-1, OsAGM, AGM
34192	22885936	Wang N., Huang H.J., Ren S.T., Li J.J., Sun Y., Sun D.Y., Zhang S.Q.	The rice wall-associated receptor-like kinase gene OsDEES1 plays a role in female gametophyte development.	Plant Physiol.	160(2)	696-707	2012	WAK92,DEES1	OsWAK92, OsDEES1-L4,WAK91, OsWAK91, OsDEES1
34193	0	Salgotra R.K., Gupta B.B., Millwood R.J., Balasubramaniam M., Stewart Jr.	Introgression of bacterial leaf blight resistance and aroma genes using functional marker-assisted selection in rice (Oryza sativa L.)	Euphytica	187(3)	313-323	2012	XA5,XA13,XA21,SK2(T)(SCL, FGR)	xa5, xa-5, Xa5, TFIIAy, OsTFIIAgamma5, TFIIAgamma5, OsTFIIAgamma5/Xa5,xa13, Xa13, Os8N3, Os-8N3, 8N3, OsSWEET11, SWEET11, OsSWEET11/Xa13, Xa13/Os8N3/SWEET11, Os8N3/Xa13, OsSWEET11/Os8N3, OsSWEET11a, SWEET11a,Xa21*, Xa21, OsXA21,sk2(t)(scl, fgr), fgr, scl, BAD2, BADH2, sk2, OsBADH2, Badh2, badh2, Os2AP, BADH-2, OsALDH10A8, ALDH10A8 
34195	0	Wang Z., Wang F., Zhou R., Wang J., Zhang H.	Identification of quantitative trait loci for cold tolerance during the germination and seedling stages in rice (Oryza sativa L.)	Euphytica	181	405-413	2011		
34197	22038433	Qiu Y., Guo J., Jing S., Zhu L., He G.	Development and characterization of japonica rice lines carrying the brown planthopper-resistance genes BPH12 and BPH6	Theoretical and Applied Genetics	124(3)	485-94	2012		
34198	0	Zhao J., Li J., Xu P., Zhou J., Hu F., Deng X., Deng W., Tao D.	A new gene controlling hybrid sterility between Oryza sativa and Oryza longistaminata	Euphytica	187	339-44	2012	S44	S44(t)
34199	22548231	Gao Q., Yang Z., Zhou Y., Yin Z., Qiu J., Liang G., Xu C.	Characterization of an Abc1 kinase family gene OsABC1-2 conferring enhanced tolerance to dark-induced stress in rice	Gene	498	155-163	2012	_	OsABC1-2, OsAbc1-2
34201	21901547	Silva J., Scheffler B., Sanabria Y., de Guzman C., Galam D., Farmer A., Woodward J., May G., Oard J.	Identification of candidate genes in rice for resistance to sheath blight disease by whole genome sequencing	Theoretical and Applied Genetics	124	63-74	2012		
34203	0	Nelson J.C., Oard J.H., Groth D., Utomo H.S., Jia Y., Liu G., Moldenhauer K.A.K., Correa-Victoria F.J., Fjellstrom R.G., Scheffler B., Prado G.A.	Sheath-blight resistance QTLS in japonica rice germplasm	Euphytica	184	23-34	2012		
34204	0	Cai H.Y., Diao S., He Y.G., Zhang L.P., Liu S.J., Zhu Y.G., Zhang Z.H.	Genetic and physical mapping of qHY-8, a pleiotropic QTL for heading date and yield-related traits in rice	Euphytica	184	109-118	2012	HD5	Hd5(t)*, Hd5, qHD5, HAP3H, OsHAP3H, NF-YB, CBF-A, DTH8 , qHD5(t)*, Ghd8, Ghd8/DTH8, Lhd1, NF-YB11, OsNF-YB11, NFYB11, LH8, DTH8/Ghd8, RH8, DTH8/Ghd8/LHD1, CAR8, DTH8/Ghd8/ OsHAP3H, EF8, OsEF8
34205	21143719	Zhang Q., Wang C., Tian J., Li K., Shou H.	Identification of rice purple acid phosphatases related to posphate starvation signalling	Plant Biol.	13	7-15	2011	PAP7,PAP9A,PAP21A,PAP21C,PAP27C,PAP10D,PAP3C,PAP1B,PAP1A,PAP23,PAP27A,PAP26,PAP3B,PAP21B,PAP3A,PAP18,PAP20A,PAP20B,PAP15,PAP10B,PAP9B,PAP1C,PAP10C,NPP1,SPX1,PAP1D,PAP10A,PHR2	OsPAP7,OsPAP9a,OsPAP21a,OsPAP21c,OsPAP27c,OsPAP10d,OsPAP3c,OsPAP1b, NPP2, OsNPP2,OsPAP1a, NPP3, OsNPP3,OsPAP23,OsPAP27a, NPP6, OsNPP6,OsPAP26,OsPAP3b,OsPAP21b,OsPAP3a,OsPAP18,OsPAP20a,OsPAP20b,OsPAP15, OsPAPhy_b, PAPhy_b, OsPHY1,OsPAP10b,OsPAP9b,OsPAP1c, NPP4, OsNPP4,OsPAP10c,OsNPP1, OsPAP27b, PAP27B,OsSPX1,OsPAP1d, NPP5, OsNPP5,OsPAP10a, PAP10, OsPAP2, PAP2,OsPHR2, Os-PHR2
34206	0	Yang X., Yu Y., Jiang L., Lin X., Zhang C., Ou X., Osabe K., Liu B.	Changes in DNA methylation and transgenerational mobilization of a transposable element (mPing) by the topoisomerase II inhibitor, etoposide, in rice	BMC Plant Biol.	12	48-	2012	_,_,_,_,_	Osr42,Osr2,Osr23,Osr35,Osr36
34207	0	Chen R., Qiu J., Jiang Y., Dong J., Xu Z., Gao X.	Isolation of a novel MYB transcription factor OsMyb1R from rice and analysis of the response of this gene to abiotic stresses	Afr. J. Biotechnol.	11	3731-3737	2012	MYB1R	OsMyb1R, OsMYB1R, LHY-like_chr.2
34208	0	Liu Y., Gu D., Ding Y., Wang Q., Li G., Wang S.	The relationship between nitrogen, auxin and cytokinin in the growth regulation of rice (Oryza sativa L.) tiller buds	Aust J Crop Sci	5	1019-1026	2011	IPT6,IPT5,IPT8,IPT1,IPT2,IPT4,IPT7,IPT3	OsIPT6, OsIPT6.p,OsIPT5,OsIPT8,OsIPT1,OsIPT2,OsIPT4,OsIPT7,OsIPT3
34209	0	Jiang Y., Dong J., Chen R., Gao X., Xu Z.	Isolation of a novel PP2C gene from rice and its response to abiotic stresses	Afr. J. Biotechnol.	10	7143-7154	2011	PP2C1	OsPP2C1, OsSIPP2C1, SIPP2C1, OsPP2C68, PP2C68, OsPP108
34212	0	Dong J., Jiang Y., Chen R., Xu Z., Gao X.	Isolation of a novel xyloglucan endotransglucosylase (OsXET9) gene from rice and analysis of the response of this gene to abiotic stresses	Afr. J. Biotechnol.	10	17424-17434	2011	XTH9	OsXTH9, OsXET9, XTH1, OsXTH1
34213	0	Rana R.M., Dong S., Ali Z., Khan A.I., Zhang H.S.	Identification and characterization of the Bcl-2- associated athanogene (BAG) protein family in rice	Afr. J. Biotechnol.	11	88-99	2012	BAG1,BAG2,BAG5,BAG3,BAG4,BAG6	OsBAG1,OsBAG2,OsBAG5,OsBAG3,OsBAG4, EIP1, OsEIP1,OsBAG6
34215	0	Sperandio M.V.L., Santos L.A., Bucher C.A., Fernandes M.S., de Souza S.R.	Isoforms of plasma membrane H+-ATPase in rice root and shoot are differentially induced by starvation and resupply of NO3- or NH4+	Plant Science	180	251-258	2011	AMT1;3,AHA10,AMT1;1,AHA6,NRT2.2,AHA9,AMT1;2,AHA4,AHA5,AHA8,AHA2,AHA3,LMPA,AHA1,NRT2.1	OsAMT1;3, AMT1-3, Osamt1-2, "OsAMT1,2", OsAMT1;2, OsAMT1.3, AMT1.2,OSA10, OsA10, osAHA10, AHA10,OsAMT1;1, OsAMT1:1, OsAMT1, AMT1-1, AMT1, OsAMT1p, OsAMT1-1, Osamt1-1, "OsAMT1,1", OsAMT1.1, AMT1.1, FCO12,OSA6, OsA6, osAHA6, AHA6,OsNRT2.2, OsNRT2.1,OSA9, OsA9, osAHA9, AHA9,OsAMT1;2, AMT1-2, Osamt1-3, "OsAMT1,3", OsAMT1;3, OsAMT1.3, OsAMT1.2, AMT1.2,OSA4, OsA4, osAHA4, AHA4,OSA5, OsA5, osAHA5, AHA5,OSA8, OsA8, A8, osAHA8, AHA8, Os-HA1, OsHA1,OSA2, OsA2, osAHA2, AHA2, OsPMA2,OSA3, OsA3, osAHA3, AHA3, PAM3,OSA7, OsA7, osAHA7, AHA7, PAA-Hwa, OsLMPA,OSA1, OsA1, osAHA1, AHA1,OsNRT2.1, OsNRT2.2
34218	0	Sung S.H., Kim B.G., Chong Y., Ahn J.H.	Characterization of Phenylpropanoid O-Methyltransferase from Rice: Molecular Basis for the Different Reactivity Toward Different Substrates	Journal of Plant Biology	54	314-320	2011	_,_,_	ROMT-27, ROMT27,ROMT-17, ROMT17, CCoAOMT1,OsOMT26, ROMT-15, ROMT15, COA20, OsCCoAOMT, CCoAOMT
34219	21221128	Che L., Tang D., Wang K., Wang M., Zhu K., Yu H., Gu M., Cheng Z.	OsAM1 is required for leptotene-zygotene transition in rice.	Cell Res.	21(4)	654-65	2011	PAIR2,RAD21-4,ZEP1,RMC1,AM1	Pair2, OsPAIR2, OsASY1,OsRad21-4, REC8, OsREC8, OsRAD21-4,OsZEP1,MER3, mer3, OsMER3, RCK, OsRCK, Os-MER3,OsAM1, SWI1, Osam1
34220	19204280	Wojciech P Pawlowski, Chung-Ju Rachel Wang, Inna N Golubovskaya, Jessica M Szymaniak, Shi L., Hamant O., Zhu T., Harper L., William F Sheridan, W Zacheus Cande	Maize AMEIOTIC1 is essential for multiple early meiotic processes and likely required for the initiation of meiosis.	Proc. Natl. Acad. Sci. U.S.A.	106(9)	3603-8	2009	AM1	OsAM1, SWI1, Osam1
34221	19558410	Zhu Y., Tingjun D.I., Xu G., Chen X., Zeng H., Yan F., Shen Q.	Adaptation of plasma membrane H(+)-ATPase of rice roots to low pH as related to ammonium nutrition.	Plant Cell Environ.	32(10)	1428-40	2009	AHA10,AHA6,AHA9,AHA4,AHA5,AHA8,AHA2,AHA3,AHA1,LMPA	OSA10, OsA10, osAHA10, AHA10,OSA6, OsA6, osAHA6, AHA6,OSA9, OsA9, osAHA9, AHA9,OSA4, OsA4, osAHA4, AHA4,OSA5, OsA5, osAHA5, AHA5,OSA8, OsA8, A8, osAHA8, AHA8, Os-HA1, OsHA1,OSA2, OsA2, osAHA2, AHA2, OsPMA2,OSA3, OsA3, osAHA3, AHA3, PAM3,OSA1, OsA1, osAHA1, AHA1,OSA7, OsA7, osAHA7, AHA7, PAA-Hwa, OsLMPA
34222	23460029	Yonekura M., Aoki N., Hirose T., Onai K., Ishiura M., Okamura M., Ohsugi R., Ohto C.	The promoter activities of sucrose phosphate synthase genes in rice, OsSPS1 and OsSPS11, are controlled by light and circadian clock, but not by sucrose.	Front Plant Sci	4	31	2013	SPS11,SPS1	sps11, OsSPS11, OsSPS5, SPS5,sps1, OsSPS1, SPS
34223	15247374	C Kate Castleden, Aoki N., Vanessa J Gillespie, Elspeth A MacRae, W Paul Quick, Buchner P., Christine H Foyer, Robert T Furbank, John E Lunn	Evolution and function of the sucrose-phosphate synthase gene families in wheat and other grasses.	Plant Physiol.	135(3)	1753-64	2004	SPS2,SPS8,SPS6,SPS1,SPS11	OsSPS2,OsSPS8, OsSPS4, SPS4,OsSPS6,sps1, OsSPS1, SPS,sps11, OsSPS11, OsSPS5, SPS5
34224	0	Kotb ATTIA, Ke-Gui LI, Chun W.E.I., Guang-Ming HE, Wei S.U., Jin-Shui YANG	Overexpression of the OsPDCD5 Gene Induces Programmed Cell Death in Rice	J Integr Plant Biol	47(9)	1115-1122	2005	PDCD5	OsPDCD5
34225	23296688	Jan A., Maruyama K., Todaka D., Kidokoro S., Abo M., Yoshimura E., Shinozaki K., Nakashima K., Kazuko Yamaguchi-Shinozaki	OsTZF1, a CCCH-tandem zinc finger protein, confers delayed senescence and stress tolerance in rice by regulating stress-related genes.	Plant Physiol.	161(3)	1202-16	2013	AOS2,_,SL,FPN1,SNRK1BETA3,C3H35,BURP16,OPT7,GNS1,NRAMP1,ICL,MTI4B,FER1	OsAOS2, CYP74A2, OsAOS, OsAOS1,OsARP, OsCTP,OsSL, sl (spl1), sl*, sl, spl1, CYP71P1, Os CYP71P1, T5H, OsT5H, CYP71A1, OsCYP71A1, OsLLM1, LLM1, LLM1/OsSL, ELL1, OsELL1, ELL1/SL, OsT5H1,OsFPN1,akin-b, akin-beta, OsSnRK1beta3, SnRK1beta3,OsC3H35, OsTZF1, OsCCCH-Zn-3,OsRD22, RD22, OsBURP16,OPT, OsOPT7,OsPR2, PR2, Gns1, OsGNS1, OsEGL1,OsNramp1, OsNRAMP1, OsNramp6,OsEnS-107, EnS-107, OsI85, I85, OsICL, Osl85, l43, Osl43, OsL85,OsMT1c, MT1c, OsMT-I-4b, MT-I-4b, OsMT1f, MT1f, MT1Lc, OsMT1Lc ,OsFER1, OsFer1 
34226	20150424	Fujiwara T., Maisonneuve S., Isshiki M., Mizutani M., Chen L., Hann Ling Wong, Kawasaki T., Shimamoto K.	Sekiguchi lesion gene encodes a cytochrome P450 monooxygenase that catalyzes conversion of tryptamine to serotonin in rice.	J. Biol. Chem.	285(15)	11308-13	2010	SL	OsSL, sl (spl1), sl*, sl, spl1, CYP71P1, Os CYP71P1, T5H, OsT5H, CYP71A1, OsCYP71A1, OsLLM1, LLM1, LLM1/OsSL, ELL1, OsELL1, ELL1/SL, OsT5H1
34227	21915334	Johnson A.A., Kyriacou B., Callahan D.L., Carruthers L., Stangoulis J., Lombi E., Tester M.	Constitutive overexpression of the OsNAS gene family reveals single-gene strategies for effective iron- and zinc-biofortification of rice endosperm.	PLoS ONE	6(9)	e24476	2011	NAS2,NAS3,NAS1	OsNAS2, OsNAS1,OsNAS3,OsNAS1
34228	17339225	Faure S, Higgins J, Turner A, Laurie DA.	The FLOWERING LOCUS T-like gene family in barley (Hordeum vulgare).	Genetics	176(1)	599-609	2007	RFT1,FTL10,HD3A,FTL4,FTL11,FTL12,FTL13,FTL1,FTL6,FTL7,FTL5,FTL8	FT-L 3, OsFTL3, FTL3, FT-L3, RFT, OsRFT1,OsFTL10,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,OsFT, osFT, FT-L 4, OsFTL4, FT-L4, FT-1, OsFT-1,OsFTL11,OsFTL12, FT-L11,OsFTL13,FTL, FT-L1, OsFTL1, FTL1,FT-L 6, OsFTL6, FT-L6,FT-L 7, OsFTL7,FT-L 5, OsFTL5, FT-L5,FT-L 8, OsFTL8
34229	10583960	Y Kobayashi, H Kaya, K Goto, M Iwabuchi, T Araki	A pair of related genes with antagonistic roles in mediating flowering signals.	Science	286(5446)	1960-2	1999	FTL4	OsFT, osFT, FT-L 4, OsFTL4, FT-L4, FT-1, OsFT-1
34230	22953761	Zhang F., Huang L., Wang W., Zhao X., Zhu L., Fu B., Li Z.	Genome-wide gene expression profiling of introgressed indica rice alleles associated with seedling cold tolerance improvement in a japonica rice background.	BMC Genomics	13(1)	461	2012	DREB1F,DREB1A,_,DREB1C,SIR2B,DREB1B,ERF3,WAK112	OsERF#027, OsERF027, OsERF27, ERF27, AP2/EREBP#081, AP2/EREBP81, OsDREB1F,OsDREB1A, Os DREB1A, CBF3, OsCBF3, OsDREB1A/OsCBF3, ERF24, OsERF24, OsERF024, OsERF#024, AP2/EREBP#114, AP2/EREBP114, OsDREBL,OsFAD7,OsDREB1C, CBF1, ERF26, OsERF026, OsERF#026, OsERF26, AP2/EREBP#098, AP2/EREBP98, OsCBF2, CBF2,Sir2, OsSIR2b, OsSir2b, OsSRT2, SRT2, DLN255, OsDLN255, OsSRT702, SRT702,OsDREB1B, ERF31, OsERF031, OsERF#031, OsERF31, AP2/EREBP#169, AP2/EREBP169, OsDREB1b, OsDREB1C, OsCBF1, CBF1,AP37, OsAP37, OsERF3, OsERF#075, OsERF075, OsERF75, ERF75, AP2/EREBP#004, AP2/EREBP4, OsBIERF2, BIERF2, DLN23, OsDLN23,OsWAK112, OsWAK112d 
34231	22446319	Starnes J.H., Thornbury D.W., Novikova O.S., Rehmeyer C.J., Farman M.L.	Telomere-targeted retrotransposons in the rice blast fungus magnaporthe oryzae: Agents of Telomere instability	Genetics	191	389-406	2012		
34233	0	Yang C., Zhao N., Xu C., Liu B., Shi D.	Regulation of ion homeostasis in rice subjected to salt and alkali stresses	Aust J Crop Sci	6	724-731	2012	SOS1,HAK10,AKT1,NHX3,HKT6,SOS2,NHX1,HAK7,HKT4,HKT1,HAK16,SKC1,SOS3	OsSOS1, OsNHA1, NHA1, SOS1/NHX7, NHX7, OsNHX7,OsHAK10,OsAKT1, Os-AKT1,OsNHX3, OsNHX2, NHX2,OsHKT6, OsHKT1;3, HKT1;3, OsHKT1;3_FL, OsHKT1;3_V1, OsHKT1;3_V2, OsHKT1;3_V3, OsHKT1;3_V4, OsHKT1;3_V5,CIPK24, OsCIPK24, OsSOS2, OsSnRK3.22, SnRK3.22,OsNHX1, OcNHX1, OgNHX1, OrNHX1, OpNHX1, ObNHX1,OsHAK7,OsHKT4, OsHKT1;1, HKT1;1, OsHKT2, RNC4, OsHKT1;1-FL, OsHKT1;1-V1, OsHKT1;1-V2, OsHKT1;1-V3, OsHKT1;1-V4, OsHKT1;1-V5, OsHKT1;1-V6, OsHKT1;1-V7, OsHKT1;1-V8,OsHKT1, OsHKT2;1, HKT2;1, Ni (Nipponbare)-OsHKT1, Po (Pokkali)-HKT1, OsHKT1;1, HKT1;1,OsHAK16,OsHKT8, HKT8, Os-HKT1;5, OsHKT1;5, HKT1;5, SKC1, qSKC-1(t), OsSKC1,CBL4, OsCBL4, OsSOS3
34235	0	Wu Q., Hou M.M., Li L.Y., Liu L.J., Hou Y.X., Liu G.Z.	Induction of pathogenesis-related proteins in rice bacterial blight resistant gene Xa21-mediated interactions with Xanthomonas oryzae pv. oryzae	Journal of Plant Pathology	93	455-459	2011	PR10A,PR1B,XA21,PR1A	PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1, OsPR1a, PR1a,Xa21*, Xa21, OsXA21,OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1, OsPR1b, PR1alpha, OsPR1alpha
34236	0	Liu C.H., Chao Y.Y., Kao C.H.	Abscisic acid is an inducer of hydrogen peroxide production in leaves of rice seedlings grown under potassium deficiency	Botanical Studies	53	229-237	2012	RAB16A	Rab16A, rab21, RAB21, OsRab21, OsRAB21, OsRAB-21, OsRab16A, OsLEA29, rab16A, OsRAB16A
34238	0	Cai J., Chen L., Qu H., Lian J., Liu W., Hu Y., Xu G.	Alteration of nutrient allocation and transporter genes expression in rice under N, P, K, and Mg deficiencies	Acta Physiologiae Plantarum	34	939-946	2012	SUT1,SUT4,_,SUT3,SUT5,MRS2-1,SUT2,LCS	OsSUT1, OsSUT2,OsSUT4(t), OsSUT4,OsMHX, OsMHX2, MHX2, OsNCX14, OsNCX14.1, OsNCX14.2, NCX14, OsMHX1, MHX1,OsSUT3(t), OsSUT3, SUC3, OsSUT2,OsSUT5(t), OsSUT5Z, OsSUT5,OsMGT, OsMRS2-1,OsSUT2(t), SUT2M, OsSUT2, OsSUT2M, OsSUT5,OsHAK1, HAK1
34239	0	Chen C., Niu X., Liu Y.	Cloning, expression and RNAi vector transformation of a zinc finger protein gene OsWIP6 from rice	Chinese Journal of Applied and Environmental Biology	18	200-205	2012	_	OsWIP6
34240	0	Sun X.Q., Wang B., Xiao Y.H., Wan C.M., Deng X.J., Wang P.R.	Genetic Analysis and Fine Mapping of Gene ygl98 for yellow-green leaf of Rice	Acta Agronomica Sinica	37	991-997	2011	YGL98	OsChlD, ChlD, CHLD, OsCHLD, Ygl7, YGL3, OsvWA12, vWA12
34242	0	Ren H., Song T., Wu T., Sun L., Liu Y., Yang F., Chen Z., Dong H.	Effects of a biocontrol bacterium on growth and defence of transgenic rice plants expressing a bacterial type-III effector	Ann. Microbiol.	56	281-287	2006	ARF1,MSRMK2,EXPA1	OsARF1, arf1, OsARF23, ARF23,OsMSRMK2, OsMAPK5, OsMAP1, OsMPK3, OsBIMK1, OsMAPK2, MPK5, BIMK1, MAPK2, MAPK5, MPK3, OsMPK5, OsMAPK3, OsMAPK5b, MAPK3,OsEXP1, EXPA1, OsEXPA1, OsaEXPa1.16, RiExA
34244	0	Bao J., Lu Y., Yang F., Zhang G., Shao Y., Corke H., Sun M.	Nucleotide polymorphisms in OsAGP genes and their possible association with grain weight of rice	J. Cereal Sci.	55	312-317	2012		
34245	0	Saeng-ngam S., Takpirom W., Buaboocha T., Chadchawan S.	The role of the OsCam1-1 salt stress sensor in ABA accumulation and salt tolerance in rice	Journal of Plant Biology	55	198-208	2012	NCED1,AAO,CAM1-1	OSNCED1, OsNCED-1, OsNCED3, OsNced3, NCED3, OsNCED9, NCED9,OsAAO, OsAAO1, AAO1,OsCaM1, OsCam1-1, OsCaM1-1, CAM3, Cam1-1, OsCAM1.1, CAM1.1
34250	22470057	Fukayama H., Ueguchi C., Nishikawa K., Katoh N., Ishikawa C., Masumoto C., Hatanaka T., Misoo S.	Overexpression of Rubisco activase decreases the photosynthetic co2 assimilation rate by reducing rubisco content in rice leaves	Plant and Cell Physiology	53	976-986	2012		
34251	22419106	Shao T., Qian Q., Tang D., Chen J., Li M., Cheng Z., Luo Q.	A novel gene ibf1 is required for the inhibition of brown pigment deposition in rice hull furrows	Theoretical and Applied Genetics	125	381-390	2012	_	IBF1, OsFBX310, FBX310,  OsFBX310, FBX310
34252	22414443	Nakamura Y., Ono M., Utsumi C., Steup M.	Functional interaction between plastidial starch phosphorylase and starch branching enzymes from rice during the synthesis of branched maltodextrins	Plant and Cell Physiology	53	869-878	2012		
34255	22433461	Li Y., Ren B., Yang X., Xu G., Shen Q., Guo S.	Chloroplast downsizing under nitrate nutrition restrained mesophyll conductance and photosynthesis in rice (Oryza sativa L.) under drought conditions	Plant and Cell Physiology	53	892-900	2012		
34258	22327484	Ozawa K., Wakasa Y., Ogo Y., Matsuo K., Kawahigashi H., Takaiwa F.	Development of an efficient agrobacterium-mediated gene targeting system for rice and analysis of rice knockouts lacking granule-bound starch synthase (Waxy) and beta1,2-xylosyltransferase	Plant and Cell Physiology	53	755-761	2012	RCN11,WX1	Xyl, OsXylT, XylT, RCN11/OsXylT, "beta1,2-XylT",wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx
34260	22514089	Eun C.H., Takagi K., Park K.I., Maekawa M., Iida S., Tsugane K.	Activation and epigenetic regulation of DNA transposon nDart1 in rice	Plant and Cell Physiology	53	857-868	2012	ADART1-27,NDART1-6,DART1-38,NDART1-3(6),NDART1-0,NDART1-1,NDART1-2,NDART1-3(3-1),NDART1-3(3-2),NDART1-3(8),NDART1-5,NDART1-7,NDART1-9,NDART1-10,NDART1-11,NDART1-12,DART1-1,DART1-2,DART1-13,DART1-16,DART1-19,DART1-27,DART1-28,DART1-34	aDart1-27,nDART1-6,Dart1-38,nDART1-3(6),nDART1-0,nDART1-1,nDART1-2,nDART1-3(3-1),nDART1-3(3-2),nDART1-3(8),nDART1-5,nDART1-7,nDART1-9,nDART1-10,nDART1-11,nDART1-12,Dart1-1,Dart1-2,Dart1-13,Dart1-16,Dart1-19,Dart1-27,Dart1-28,Dart1-34
34261	22199373	Park Y.I., Do K.H., Kim I.S., Park H.H.	Structural and functional studies of casein kinase i-like protein from rice	Plant and Cell Physiology	53	304-311	2012	_	CKI
34262	22408076	Yin L.L., Xue H.W.	The MADS29 transcription factor regulates the degradation of the nucellus and the nucellar projection during rice seed development	Plant Cell	24	1049-1065	2012	_,FST 	,OsMADS29, MADS29, OsFST
34263	22492233	Musembi Mutuku J., Nose A.	Changes in the contents of metabolites and enzyme activities in rice plants responding to rhizoctonia solani Kuhn infection: Activation of glycolysis and connection to phenylpropanoid pathway	Plant and Cell Physiology	53	1017-1032	2012		
34269	22395576	Dai X., Wang Y., Yang A., Zhang W.H.	OsMYB2P-1, an R2R3 MYB transcription factor, is involved in the regulation of phosphate-starvation responses and root architecture in rice	Plant Physiol.	159	169-183	2012		
34272	22499210	Zhang C.J., Guo Y.	OsTRXh1 regulates the redox state of the apoplast and influences stress responses in rice	Plant Signaling and Behavior	7	440-2	2012		
34273	0	Wang H., Wu Z., Zhou Y., Han J., Shi D.	Effects of salt stress on ion balance and nitrogen metabolism in rice	Plant, Soil and Environment	58	62-67	2012		
34274	0	Siao W., Chen J.Y., Hsiao H.H., Chung P., Wang S.J.	Characterization of OsSUT2 expression and regulation in germinating embryos of rice seeds	Rice (N Y)	4(2)	39-49	2011		
34275	0	Bhasin H., Bhatia D., Raghuvanshi S., Lore J.S., Sahi G.K., Kaur B., Vikal Y., Singh K.	New PCR-based sequence-tagged site marker for bacterial blight resistance gene Xa38 of rice	Molecular Breeding	30	607-611	2012	XA38	Xa38
34277	22655071	Wang H., Wu Z., Han J., Zheng W., Yang C.	Comparison of Ion balance and nitrogen metabolism in old and young leaves of Alkali-stressed rice plants	PLoS ONE	7	e37817	2012		
34278	0	Takekawa Y., Nakamura T.	Rice OsHOL1 and OsHOL2 proteins have S-adenosyl-L-methionine-dependent methyltransferase activities toward iodide ions	Plant Biotechnology	29	103-108	2012	_,_	OsHOL2,OsHOL1
34279	22393712	Li Y., Chen Y., Wu J., He C.	Expression and functional analysis of OsRboh gene family in rice immune response	Shengwu Gongcheng Xuebao/Chinese Journal of Biotechnology	27	1574-1585	2011	RBOHG,RBOHI,RBOHB,RBOHD,RBOHC,RBOHA,RBOHE	rbohG, OsrbohG, Os rbohG, OsRbohG, OsNox7, Nox7, OsrbohB, OsRBOHB, RBOHB, OsRboh7, Rboh7,OsrbohI, Os rbohI, rbohI, OsRbohI, OsRbohF, OsNOX8, NOX8, OsRboh8, Rboh8,rbohB, OsrbohB, Os rbohB, OsRbohB, OsNox1, Nox1, Os-RbohB, RbohB, OsRboh1, Rboh1,rbohD, OsrbohD, Os rbohD, OsRbohD, OsNox4, OsRboh4, Rboh4,rbohC, OsrbohC, Os rbohC, OsRbohC, OsNox5, Nox5, OsrbohD, OsRboh5, RBOHA, OsRboh5, Rboh5,rbohA, OsrbohA, Os rbohA, OsRbohA, OsNox2, Nox2, OsRboh2, Rboh2,rbohE, OsrbohE, Os rbohE, OsRbohE, OsNox3, Nox3, OsRboh3, Rboh3
34281	22751314	Hsu Y.Y., Chao Y.Y., Kao C.H.	Biliverdin-promoted lateral root formation is mediated through heme oxygenase in rice	Plant Signaling and Behavior	7(7)	885-7	2012		
34282	20404569	Wu P., Xu J.	Does OsPHR2, central Pi-signaling regulator, regulate some unknown factors crucial for plant growth?	Plant Signaling and Behavior	5	712-714	2010	PT2,SPX3,PHR2,SPX1	OsPT2, PTH1-2, OsPht1;2, PHT1;2, OsPHT1;2,OsSPX3,OsPHR2, Os-PHR2,OsSPX1
34284	0	Noguera D., Barot S., Laossi K.R., Cardoso J., Lavelle P., Cruz de Carvalho M.H.	Biochar but not earthworms enhances rice growth through increased protein turnover	Soil Biology and Biochemistry	52	13-20	2012	_,_,_,_,SUB20,MSP,RBCS	OsCatB,OsAP1,Oryzasin,OsCP1, CP1,OsSP1, SP1, OsSub20,OsSub42, SUB42, OsSP2, OS-MSP, OsMSP,rbcS, OsRbcS, RBCS-C, RbcS2, OsRBCS2, RbcS1, OsRbcS2, OsrbcS1
34287	0	Wang H., Ahan J., Wu Z., Shi D., Liu B., Yang C.	Alteration of nitrogen metabolism in rice variety 'Nipponbare' induced by alkali stress	Plant Soil	355	131-147	2012	AMT1;2,GLN1;1,AMT1;1,GDH3,HTNE,PRODH,NRT1,_,AMT2;2,AMT2;3,AMT3;1,P5CS,GS2,ABC1,GDH1,AMT2;1,AMT1;3,GLN1;3,AMT3;2,AMT3;3,ASN,GLT1,PTR6,GLN1;2	OsAMT1;2, AMT1-2, Osamt1-3, "OsAMT1,3", OsAMT1;3, OsAMT1.3, OsAMT1.2, AMT1.2,OsGLN1;1, GS1, RGS28, OsGS1;1, GS1;1, OsGS, GS1, OsGS1, GLN1-1, OsGS1-1, GS1-1, GS1.1, OsGS1.1,OsAMT1;1, OsAMT1:1, OsAMT1, AMT1-1, AMT1, OsAMT1p, OsAMT1-1, Osamt1-1, "OsAMT1,1", OsAMT1.1, AMT1.1, FCO12,OsGDH3,NRT2.3, OsNRT2.3, OsNRT2;1, OsNRT2.3a, OsNRT2.3b, OsNRT2;3a, OsNRT2.5 ,OsProDH, OsPDH, PDH,OsNRT1, OsNRT1;1, OsNRT1.1, OsNRT1.1a, OsNRT1.1b, NRT1.1, NRT1.1a, NRT1.1b, OsNPF8.9, NPF8.9 , OsNRT1.1B,OsNR1, NR1, nia1, OsNIA1, NIA1, OsNIA2, NIA2,OsAMT2;2, AMT2;2, OsAMT2.2,OsAMT2;3, AMT2;3, OsAMT2.3,OsAMT3;1, AMT3-1, OsAMT3.1, OsAMT2;2,OsP5CS, P5CS1, OsP5CS1, OsALDH18B1, ALDH18B1, OsP5CS-1, P5CS-1,OsGS2, GLN2, OsGLN2, RGS31, OsRGS31,OsABC1, SPL32, OsSPL32, OsGLU, OsFd-GOGAT, Fd-GOGAT, ABC1/ OsFd-GOGAT ,OsGDH1,OsAMT2;1, AMT2-1, OsAMT2.1, AMT2.1,OsAMT1;3, AMT1-3, Osamt1-2, "OsAMT1,2", OsAMT1;2, OsAMT1.3, AMT1.2,OsGLN1;3, OsGS1;3, GS1;3,AMT3;2, OsAMT3;2, OsAMT3.2,OsAMT3;3, AMT3;3, OsAMT3.3,OsASN2, OsAS, OsAS2, AS2,OsGLT1, OsNADH-GOGAT1, NADH-GOGAT1, OsNADH-GOGAT, GOGAT, NADH-GOGAT, OsGOGAT1, GOGAT1, OsGLU1,OsPTR6, OsNRT1;2, NRT1;2, OsNPF7.3, NPF7.3 ,OsGLN1;2, GSr, RGS8, OsGS1;2, GS1;2, GS1, OsGS1-2, GS1-2, OsGS1.2, GS1.2
34288	19419967	Nagatoshi Y., Nakamura T.	Arabidopsis HARMLESS TO OZONE LAYER protein methylates a glucosinolate breakdown product and functions in resistance to Pseudomonas syringae pv. maculicola.	J. Biol. Chem.	284(29)	19301-9	2009	_,_	OsHOL1,OsHOL2
34295	0	Luo X.D., Dai L.F., Cao J.F., Jian S.R., Chen Y.L., Hu B.L., Xie J.K.	Identification and molecular cytology analysis of cold tolerance introgression lines derived from Oryza sativa L. mating with O. rufipogon Griff.	Euphytica	187	461-9	2012		
34297	22836167	Kim D.S., Lee K.J., Yim W.C., Kim J.B., Ha B.K., Kim S.H., Kang S.Y.	Transcriptional network analysis of the tryptophan-accumulating rice mutant during grain filling	Molecular Genetics and Genomics	287(9)	699-709.	2012	ASA2,ASA1	OASA2 (=ASA2), OsASA2, OASA2, ASalpha2, OsASalpha2, OASA2,OASA1 (=ASA1), OsASA1, OASA1, OASA1(D323N), OASA1D
34301	0	Zhang W., Zhang L., Qiao L., Wu J., Zhao G., Jing R., Lv W., Jia J.	Cloning and haplotype analysis of TaSTE, which is associated with plant height in bread wheat (Triticum aestivum L.)	Molecular Breeding	31	47-56	2012	_	OsSTE1, OsDWF7
34309	0	Lee H., Ko Y.J., Cha J.Y., Park S.R., Ahn I., Hwang D.J.	The C-terminal region of OsWRKY30 is sufficient to confer enhanced resistance to pathogen and activate the expression of defense-related genes	Plant Biotechnol Rep	7	221-30	2013	PR10A,WRKY30	PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsWRKY30
34311	22942769	Law Y.S., Gudimella R., Song B.K., Ratnam W., Harikrishna J.A.	Molecular characterization and comparative sequence analysis of defense-related gene, Oryza rufipogon receptor-like protein kinase 1	Int J Mol Sci	13	9343-9362	2012	_,_	OsRPK1, OsJNipponRPK1, OsI219RPK1, OsI9311RPK1,OsJ_RLL1
34312	0	Sun L.J., Zhang Q., Tie-Gang L.U., Sun Y.	Screen of receptor-like kinase OsWAK50 intracellular interacting proteins by yeast two-hybrid system	Progress in Biochemistry and Biophysics	39	438-447	2012	WAK53,WAK50,_,SWI3C,SK4	OsWAK53, OsWAK53a,OsWAK50,OsSWIB,OsSWI3C, OsCHB705, CHB705, OsSWI3C1, SWI3C1,OsSK4, OsSKL1
34313	23053954	Jun L., Xiaoming W.	Genome-wide identification, classification and expression analysis of genes encoding putative fasciclin-like arabinogalactan proteins in Chinese cabbage (Brassica rapa L.).	Mol. Biol. Rep.	39(12)	10541-55	2012	AGP9,AGP17,AGP28,FLA15,FLA8,_,AGP10,AGP12,AGP15,AGP18,AGP2,AGP4,AGP5,AGP6,AGP13,AGP8,AGP11,AGP25,AGP20,AGP21,AGP3,_,AGP16,_,AGP22,AGP23,AGP24,AGP27,AGP26,_,FLA1,FLA4,FLA3,FLA5,FLA11,FLA6,FLA9,FLA7,FLA12,FLA14,FLA13,FLA16,FLA17,FLA18,FLA24,FLA20,FLA21,FLA23,FLA25,FLA27,FLA26,AGP14,AGP19,_,AGP1,AGP29,AGP7,FLA2,AGP30,_,FLA19,FLA10,_,AGP31,_,ENODL1,ENODL18,FLA22,ENODL6	OsAGP9,OsAGP17,OsAGP28,OsFLA15,OsFLA8,OsLLA2, OsLTPG27, LLA2, LTPG27,OsAGP10,OsAGP12,OsAGP15,OsAGP18,OsAGP2,OsAGP4,OsAGP5,OsAGP6,OsAGP13,OsAGP8,OsAGP11,OsAGP25,OsAGP20,OsAGP21,OsAGP3,OsLLA4, LLA4, OsHyPRP20, HyPRP20,OsAGP16,OsLLA5, LLA5, OsHyPRP21, HyPRP21,OsAGP22,OsAGP23,OsAGP24,OsAGP27,OsAGP26,OsLLA6, OsLTPG14, OsLTPg14, LLA6, LTPG14, LTPg14,OsFLA1,OsFLA4,OsFLA3,OsFLA5,OsFLA11,OsFLA6,OsFLA9,OsFLA7,OsFLA12,OsFLA14,OsFLA13,OsFLA16,OsFLA17,OsFLA18,OsFLA24,OsFLA20,OsFLA21,OsFLA23,OsFLA25,OsFLA27,OsFLA26,OsAGP14, OsAGPEP2,OsAGP19, OsAGPEP1,OsLLA1, OsLTPG6, OsLTPg6, OsLTPL1, LLA1, LTPG6, LTPg6, LTPL1,OsAGP1,OsAGP29,OsAGP7,OsFLA2,OsAGP30, DLN50, OsDLN50,OsLLA3, LLA3, OsHyPRP15, HyPRP15,OsFLA19,OsFLA10,OsLLA7, OsLTPG21, OsLTPg21, LLA7, LTPG21, LTPg21, OsHyPRP25, HyPRP25,OsAGP31, OsGP1, GP1,OsLLA8, LLA8, OsHyPRP27, HyPRP27,OsENODL1, OsELA1, ELA1,OsENODL18, OsELA3, ELA3, EN20, OsEN20,OsFLA22,OsENODL6, OsELA2, ELA2, OsEnS-24
34314	17448255	Montanini B., Blaudez D., Jeandroz S., Sanders D., Chalot M.	Phylogenetic and functional analysis of the Cation Diffusion Facilitator (CDF) family: improved signature and prediction of substrate specificity.	BMC Genomics	8	107	2007	MTP1	OsMTP1
34315	16230331	Jae Bok Heo, Hee Sun Rho, Se Won Kim, Sung Min Hwang, Hyun Jin Kwon, Min Yeop Nahm, Woo Young Bang, Jeong Dong Bahk	OsGAP1 functions as a positive regulator of OsRab11-mediated TGN to PM or vacuole trafficking.	Plant Cell Physiol.	46(12)	2005-18	2005	_,GAP1,GDI3,_	OsRab8A5, OsRab8a,OsGAP1,OsGDI3, OsGDI2, GDI2,OsRab11D1, OsRab11, Rab11, ric2
34316	16415208	Gu Y., Li S., Elizabeth M Lord, Yang Z.	Members of a novel class of Arabidopsis Rho guanine nucleotide exchange factors control Rho GTPase-dependent polar growth.	Plant Cell	18(2)	366-81	2006	ROPGEF4,ROPGEF7,ROPGEF1,ROPGEF11/12,ROPGEF2,ROPGEF3,ROPGEF6,ROPGEF8,ROPGEF9,ROPGEF5,BGL	Os RopGEF4, OsRopGEF4, RopGEF4,Os RopGEF7, OsRopGEF7, RopGEF7, OsRacGEF2, RacGEF2, OsRacGEF1, RacGEF1, OsGEF20, GEF20,Os RopGEF1, OsRopGEF1, RopGEF1, OsRacGEF7, RacGEF7, OsGEF22, GEF22,Os RopGEF11, OsRopGEF11, RopGEF11, Os RopGEF12, OsRopGEF12, RopGEF12, OsRopGEF11/12, OsGEF25, GEF25,Os RopGEF2, OsRopGEF2, RopGEF2, OsSTA159, OsGEF29, GEF29,Os RopGEF3, OsRopGEF3, RopGEF3, OsGEF26, GEF26,Os RopGEF6, OsRopGEF6, RopGEF6, OsGEF28, GEF28,Os RopGEF8, OsRopGEF8, RopGEF8, OsGEF27, GEF27,Os RopGEF9, OsRopGEF9, RopGEF9, OsGEF24, GEF24,OsRacGEF1, RacGEF1, OsRopGEF5, Os RopGEF5, RopGEF5, OsRopGEF7B, RopGEF7B, OsGEF19, GEF19,bgl, OsRopGEF10, Os RopGEF10, RopGEF10, OsGEF21, GEF21, SPD25, OsSPD25
34317	11673635	K Ishimaru, T Hirose, N Aoki, S Takahashi, K Ono, S Yamamoto, J Wu, S Saji, T Baba, M Ugaki, T Matsumoto, R Ohsugi	Antisense expression of a rice sucrose transporter OsSUT1 in rice (Oryza sativa L.).	Plant Cell Physiol.	42(10)	1181-5	2001	SUT1	OsSUT1, OsSUT2
34318	17138625	Graham N Scofield, Aoki N., Hirose T., Takano M., Colin L D Jenkins, Robert T Furbank	The role of the sucrose transporter, OsSUT1, in germination and early seedling growth and development of rice plants.	J. Exp. Bot.	58(3)	483-95	2007	SUT1	OsSUT1, OsSUT2
34319	17587305	Nakashima K., Lam-Son P Tran, Dong Van Nguyen, Fujita M., Maruyama K., Todaka D., Ito Y., Hayashi N., Shinozaki K., Kazuko Yamaguchi-Shinozaki	Functional analysis of a NAC-type transcription factor OsNAC6 involved in abiotic and biotic stress-responsive gene expression in rice.	Plant J.	51(4)	617-30	2007	NAC6	OsNAC6, ONAC048, NAC48, SNAC2, SNAC2/OsNAC6, OsNAC6/ONAC048, OsSNAC2, SNAC-2, OsSNAC-2, OsNAC2
34320	16172526	Ohnishi T., Sugahara S., Yamada T., Kikuchi K., Yoshiba Y., Hiro-Yuki Hirano, Tsutsumi N.	OsNAC6, a member of the NAC gene family, is induced by various stresses in rice.	Genes Genet. Syst.	80(2)	135-9	2005	NAC6	OsNAC6, ONAC048, NAC48, SNAC2, SNAC2/OsNAC6, OsNAC6/ONAC048, OsSNAC2, SNAC-2, OsSNAC-2, OsNAC2
34321	15029955	Ooka H., Satoh K., Doi K., Nagata T., Otomo Y., Murakami K., Matsubara K., Osato N., Kawai J., Carninci P., Hayashizaki Y., Suzuki K., Kojima K., Takahara Y., Yamamoto K., Kikuchi S.	Comprehensive analysis of NAC family genes in Oryza sativa and Arabidopsis thaliana.	DNA Res.	10(6)	239-47	2003	ONAC2,Y37,NAC60,NAC73,NAC4,NAC75,NAC65,NAC32,NAC28,_,_,NAC18,NAC19,NAC41,NAC47,NAC49,NAC36,NAC42,NAC37,NAC21,NAC13,_,NAC70,NAC29,NAC26,NAC8,NAC10,_,NAC14,NAC66,NAC40,NAC25,NAC12,NAC63,NAC55,NAC31,NAC6,NAC15,NAC59,NAC72,NAC62,NAC22,NAC5,NAC3,NAC45,NAC61,NAC17,NAC1,NAC24,_,TIL1,NAC6,CUC1,TMS5	SNAC1, snac1, OsNAC9, ONAC002, ONAC2, ONAC033, ONAC33, ONAC043, ONAC43, ONAC044, ONAC44, OsNAC19, NAC19, SNAC1/ONAC002, OsSNAC1, OsNAC9, OsNAC1,NAC11, ONAC011, ONAC11, OMTN4, OsY37, OsY37N, OsY37I, OsNAC1, DLN172, OsDLN172, OsNAC092, NAC092, OsNAC92, NAC92,ONAC060, ONAC60, OMTN3, OsNAC60, DLN265, OsDLN265,ONAC073, ONAC73, OsSND2, SND2,OsNAC4, NAC68, ONAC068, OnNAC4*, OnNAC4, OsNAC4/ONAC068,ONAC075, ONAC75,ONAC065, ONAC65,ONAC032, ONAC32, ONAC056, ONAC56,ONAC028, ONAC28,ONAC005, ONAC5, ONAC035, ONAC35, ONAC046, ONAC46, ONAC052, ONAC52,ONAC001, ONAC1,ONAC018, ONAC18, OsSWN4,ONAC019, ONAC19,ONAC041, ONAC41, ONAC050, ONAC50,ONAC047, ONAC47,ONAC049, ONAC49, ONAC053, ONAC53, NAC53, ONAC057, ONAC57, NAC57,ONAC036, ONAC36, ONAC038, ONAC38, IDEF2, OsIDEF2,OsNAC42, ONAC042, ONAC42, ONAC051, ONAC51, OsNTL4, NTL4,ONAC037, ONAC37, OsNTL2, NTL2,ONAC021, ONAC21, DLN220, OsDLN220,ONAC013, ONAC13, ONAC064, ONA064, DLN53, OsDLN53,ONAC003, ONAC3, ONAC016, ONAC16, SNAC3, OsSND3, SND3, OsNAC006, NAC006, ONAC066,ONAC070, ONAC70, OsNTL6, NTL6, OsNAC78,ONAC029, ONAC29, OsSWN2, OsSWN2L, OsSWN2S, OsNST1/2, SWN2, SWN2L, SWN2S, NST1/2, DLN201, OsDLN201,ONAC026, ONAC26, OsEnS-8, DLN11, OsDLN11,OsNAC8, ONAC074, ONAC74, NAC74, OsNAC8/ONAC074, OsNTL3, NTL3,ONAC010, ONAC10, OsSTA199, OsNAC3, NAC3,ONAC008, ONAC8, NAC8,ONAC014, ONAC14, OsNAC14, NAC14, OsNAC68, NAC68,ONAC066, ONAC66,ONAC040, ONAC40, ONAC054, ONAC54, OsNTL5, NTL5, UCIP17, OsUCIP17,ONAC025, ONAC25, OsEnS-144, OsNAC025, NAC025,ONAC012, ONAC12,ONAC063, ONAC63,ONAC055, ONAC55, CRPG64, OsCRPG64,ONAC031, ONAC31, OsSWN3,ONAC006, ONAC6, DLN95, OsDLN95,OsNAC15, ONAC015, ONAC15, ONAC069, ONAC69,ONAC059, ONAC59,ONAC072, ONAC72, DLN228, OsDLN228,ONAC062, ONAC62, OsSND2, SND2,ONAC022, ONAC22,OsNAC5, NAC71, ONAC071, ONAC009, ONAC9, ONAC020, ONAC20, OnNAC5*, OnNAC5, OsNAC5/ONAC009,OsNAC3, NAC67, ONAC067, OnNAC3*, OsNAC3/ONAC067, DLN180, OsDLN180,ONAC045, ONAC45, DLN243, OsDLN243, OsNAM, NAM,ONAC061, ONAC61,ONAC017, ONAC17, ONAC030, ONAC30, OsNAC111,OsNAC1, ONAC027, ONAC27, NAC27, OMTN1, OsNAC1/ONAC027, DLN60, OsDLN60, OsORE1,NAC94, ONAC024, ONAC24, OsNAC024, NAC024,ONAC007, ONAC7, OsSND1, SND1, OsSWN1, SWN1, DLN157, OsDLN157,NAC2, OsNAC2, ONAC004, ONAC4, ONAC034, ONAC34, ONAC058, ONAC58, OMTN2, Ostil1, OsNAC2/ONAC004, OsORE1.2, DLN113, OsDLN113,OsNAC6, ONAC048, NAC48, SNAC2, SNAC2/OsNAC6, OsNAC6/ONAC048, OsSNAC2, SNAC-2, OsSNAC-2, OsNAC2,ONAC039, ONAC39, NAC39, OsCUC1, DLN86, OsDLN86,tms5, NAC18, ONAC023, ONAC23, NAC23, TMS5/ONAC023, OsEnS-30
34322	19897605	Marcelo C Pomeranz, Hah C., Pei-Chi Lin, Shin Gene Kang, John J Finer, Perry J Blackshear, Jyan-Chyun Jang	The Arabidopsis tandem zinc finger protein AtTZF1 traffics between the nucleus and cytoplasmic foci and binds both DNA and RNA.	Plant Physiol.	152(1)	151-65	2010	DOS,C3H37,C3H67,C3H35,C3H50,C3H24,C3H33,C3H10	OsDOS, OsC3H2, C3H2, OsTZF2, OsCCCH-Zn-4,OsC3H37, OsTZF7, OsCCCH-Zn-1,OsC3H67, OsTZF4, OsCCCH-Zn-7,OsC3H35, OsTZF1, OsCCCH-Zn-3,OsC3H50, OsTZF6, OsCCCH-Zn-6, DLN188, OsDLN188,OsC3H24, OsTZF3, TZF3, OsCCCH-Zn-8, CCCH-Zn-8,OsC3H33, OsTZF5, TZF5, OsCCCH-Zn-5, CCCH-Zn-5,OsC3H10, OsTZF8, OsCCCH-Zn-2, OsEnS-12
34323	19712067	Zhou L., Ming-Yan Cheung, Zhang Q., Cai-Lin Lei, Shi-Hong Zhang, Samuel Sai-Ming Sun, Hon-Ming Lam	A novel simple extracellular leucine-rich repeat (eLRR) domain protein from rice (OsLRR1) enters the endosomal pathway and interacts with the hypersensitive-induced reaction protein 1 (OsHIR1).	Plant Cell Environ.	32(12)	1804-20	2009	_,HIR1,SG2	OsLRP, OsLRR1, LRR1,OsHIR1, OsHSI1,OsSERK1, SERK1, OsBAK1, BAK1, OsSERK1/OsBAK1, OsBISERK1, BISERK1, OsSerk1, OsBAK1-1, 08SG2/OsBAK1, 08SG2, OsSG2
34324	0	Dhaliwal H.S., Das A, Singh A, Gupta V.K.	Isolation of insertional mutants in indica rice using Ds transposable element of maize.	Rice Genet Newslett	18	98-99	2001	_	OsPE
34325	19816724	Puri A., P Osman Basha, Kumar M., Rajpurohit D., Gursharn S Randhawa, Shahryar F Kianian, Rishi A., Harcharan S Dhaliwal	The polyembryo gene (OsPE) in rice.	Funct. Integr. Genomics	10(3)	359-66	2010	_	OsPE
34326	20178989	Yu Q., Schaub P., Ghisla S., Salim Al-Babili, Anja Krieger-Liszkay, Beyer P.	The Lycopene cyclase CrtY from Pantoea ananatis (formerly Erwinia uredovora) catalyzes an FADred-dependent non-redox reaction.	J. Biol. Chem.	285(16)	12109-20	2010	LCYB	OsLCYbeta, OsLYCb, OsLCY, beta-OsLCY, beta-LCY
34327	22207384	Li S.P., Duan Y.L., Chen Z.W., Guan H.Z., Wang C.L., Zheng L.L., Zhou Y.C., Wu W.R.	[Genetic analysis and gene mapping of ddf1, a pleiotropic gene involving in both vegetable and reproductive growth in rice].	Yi Chuan	33(12)	1374-9	2011	DDF1	OsDDF1
34328	0	Chang P, Huang C, Chang F, Tseng T, Lin W, Lin C	Isolation and characterization of the third gene encoding a 16.9 kDa class I low-molecular-mass heat shock protein, Oshsp 16.9 C, in rice.	Botanical Bulletin of Academia Sinica	42(2)	85-92	2001	HSP16.9C	Oshsp16.9C, OsHsp16.9C, HSP16.9C, OsHSP16.9C-CI, Oshsp 16.9C
34329	17428833	Y H Duan, Y L Zhang, L T Ye, X R Fan, G H Xu, Q R Shen	Responses of rice cultivars with different nitrogen use efficiency to partial nitrate nutrition.	Ann. Bot.	99(6)	1153-60	2007	AMT1;1,AMT1;2,AMT1;3	OsAMT1;1, OsAMT1:1, OsAMT1, AMT1-1, AMT1, OsAMT1p, OsAMT1-1, Osamt1-1, "OsAMT1,1", OsAMT1.1, AMT1.1, FCO12,OsAMT1;2, AMT1-2, Osamt1-3, "OsAMT1,3", OsAMT1;3, OsAMT1.3, OsAMT1.2, AMT1.2,OsAMT1;3, AMT1-3, Osamt1-2, "OsAMT1,2", OsAMT1;2, OsAMT1.3, AMT1.2
34330	23184051	Miah G., Rafii M.Y., R .Ismail M., B. Puteh A., A. Rahim H., Asfaliza R., A. Latif M.	Blast resistance in rice: a review of conventional breeding to molecular approaches	Mol. Biol. Rep.	40(3)	2369-88	2013	PI38,PI5-2,PI34,PIZT,PI44,PI18,PIKS,IPI,IPI3,PI21,PI31,PI20,PI19,PI32,PI62,PI39,PI6,PI157,PI12,PIA,PICO39,PB1,PIKM,PIKP,PITQ6,PIG,PILM2,PIGD2,PIGD3,PI24,PI25,PI35,PIKH,PIK,PI24,PI21,PIKUR1,PITA,PI3,PIT,PITQ5,PI,PIKG,MPI,PIZH,PI40,PI8,PI26,PI10,PIIS1,PID1,PI13,PI16,PI23,PI17,PI26,PI28,PI29,PI15,PI27,PI39,PIF,PII2,PISE1,PIKUR2,PIZ5,PID2,PITP,PIY2,PI14,PI27,PI33,PIGD1,PIIS2,PIGM,PII,PI36,PIY1,PI37,PI22,PI1,PBR*,PISH,PIZ,PIB,PI9,PI12,PIQ1,PI13,PI14,PI67,PI7	Pi38, Pi-38,Pi3, Pi5, Pi-3(t), Pi-3, Pi3(t), Pi5(t), Pi5-2, Pii,  RMg22, RMg21,Pi34, RMg71, Pi24(t),Piz-t, Pi-zt, Pi-z(t), Pi2/Pizt, Pizt, Pi9, OsPiz-t,Pi44(t)*, Pi44(t), Pi44, Pi-44(t),Pi18(t)*, Pi18(t), Pi18, Pi-18(t), Pi-18,Pi-ks, Pi-s, Pik-s, Piks,IPi(t)*, IPi. Rmg56,IPi3(t)*, IPi3, Rmg57,Pi21(t)*, Pi21, RMg41, Pi-21(t), Pi21(t),Pi-31(t), Pi31(t)*, Pi31(t),Pi20, Pi20(t),Pi19(t), Pi14, Pi19,Pi-32(t), Pi32(t)*, Pi32(t),Pi62(t)*(=Pita?), Pi62(t)*, Pi62, Pi62(t), Pi-62(t),Pi39(t), Pi39,Pi6(t)*, Pi6, Pi-6(t), pi6(t),Pi157*, Pi157(t)*, Pi-157, Pi157,Pi12(t), Pi12(t)*, Pi12, Pi-12(t) ,Pi a, Pia, Pi-a, Pia-1, Pia-2,PiCO39(t), Pi-CO39, Pi-CO39(t), pi-CO39(t),Pb1, Pbst, RMG58.,Pik-m, Pi-m, Pi-km, Pikm, Pi m, Pikm1-TS, Pikm2-TS, Pi-km1, Pi-km2,Pik-p, Pi-kp, Pikp, Pikp-1, Pikp-2,Pi-tq6, Pitq6,Pi-g(t),Pi-lm2, Pilm2, Pi lm2, Pib2,Pi-GD-2(t), PiGD-2(t),Pi-GD-3(t), PiGD-3(t),Pi24(t), Pi-24(t), Pi-24, Pi24,Pi25, Pi25(t),Pi35(t),Pi-kh, Pi k-h, Pi54, Pi54rh, Pi-k(h), Pik-h, Pikh,Pik, RMg8, Pi-k, Pik-2, Pik-1, Pik1, Pik2, Pik-H4, Pikp-1, Pikh-1, Pik1-H4, Pikh-2, Pik2-H4,Pi24, Pi24(t),pi21, rMg40, OsHMP26, HMP26, OsHIPP5, HIPP5, OsaHIP05, HIP05 ,Pi kur1*, PIKUR1, Pikur1*, Pikur1, RMg9, Pi-kur 1, Pi-kur1,Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30, Trx30,Pi3, Pi5, Pi-3(t), Pi-3, Pi3(t), Pi5(t), Pi5-1, Pii,  RMg22, RMg21,Pit, Pit(K59), Pit(Npb), Pi-t, PitNpb, PitK59, Pit1, OsPit1,Pitq5*, Pi-tq5, Pi-tq5, Pitq-5, Pitq5,Pi(t)*, Pi(t),Pikg, Pik-g,MPi z(Rb6), Rb6, MPiz,Pizh,Pi40(t), Pi40, pi40, Pi-40(t), Pi-40,Pi8, Pi-8,Pi26(t), Pi26,Pi10(t)*, Pi10, Pi-10t, Pi-10, Pi-10(t),Pi is1(Rb4), Rb4, Rb-4, Piis1, Pi-is-1,Pi-d1, Pi-d(t), Pi-d(t)1, PiD1(t), Pid1, Pid1(t),Pi13(t), Pi13(t)*, Pi13,Pi16(t), Pi16, Pi-16(t),Pi23(t)*, Pi23(t), Pi23, RMg43, Pi-23(t),Pi17(t), Pi17, Pi-17(t),Pi26(t), Pi-26(t),Pi28(t), Pi-28(t),Pi-29(t), Pi29(t),Pi15(t), Pi15, RMg34.,Pi27(t), Pi-27(t),Pi39(t), Pi39,Pi f, PIF, Pif, RMg3, Pi-f,Pi i2, Pii2, Pii2(t),Pi se1(Rb1), Rb1, Pise1, RMg11, Pi-se, Pi-se-1, Pise-1, Rb-1,Pi kur2*, PIKUR2, Pikur2, Pikur2*, RMg10, Pi-kur 2, Pi-kur2,Piz-5, Pi-z5, Piz5, Pi-2(t), Pi-2, Pi2,Pi-d2, Pi-d(t)2, PiD2(t), Pid2, PI-D2, Pi-d2(t), SDRLK-PID2, OsSDRLK-PID2,Pi-tp(t), Pitp(t), Pi-tp,Pi-y2, Pi-y2(t), Pi-y1(t), Piy2(t), Pi-y(t),Pi14(t), Pi14(t)*, Pi14,Pi27, Pi27(t), Pi-27(t),Pi33(t), RMg70, Pi-33(t), Pi-33, Pi33,Pi-GD-1(t), PiGD1, PiGD-1(t),Pi is2(Rb5), Rb5, Piis2, Pi-is-2, Rb-5,Pigm(t), Pi-gm(t), Pigm,Pi i, Pii, Pi-i, Pii(t),Pi36(t), Pi36,Pi-y1(t), Pi-y(t), Piy1(t),Pi37(t), Pi37,Pi22(t)*, Pi22, RMg42, pi22(t), Pi-22(t),Pi1, Pi-1, Pi1-5C, Pi1-6C,PBR*,Pi sh, Pish, Pi-sh, Pish(t),Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2,Pi b(Pi s), Pis, Pib, Pi-s, Pi-hy,Pi9(t), Pi9(t)*, Pi9, Pi-9(t),Pi12(t), Pi12(t)*, Pi12, Pi-12(t),Piq1*, Pitq1*, Pitq1, Pi-tq1, Pitq-1,Pi13(t), Pi13(t)*, Pi13, Pi-13(t)*,Pi14(t), Pi14(t)*, Pi14,Pi67(t)*, Pi67, Pi67(t),Pi7, Pi-7(t), Pi7(t)
34331	16908506	Wakasa K., Hasegawa H., Nemoto H., Matsuda F., Miyazawa H., Tozawa Y., Morino K., Komatsu A., Yamada T., Terakawa T., Miyagawa H.	High-level tryptophan accumulation in seeds of transgenic rice and its limited effects on agronomic traits and seed metabolite profile.	J. Exp. Bot.	57(12)	3069-78	2006	ASA1,ASA2	OASA1 (=ASA1), OsASA1, OASA1, OASA1(D323N), OASA1D,OASA2 (=ASA2), OsASA2, OASA2, ASalpha2, OsASalpha2, OASA2
34332	0	Poornejad N., Karimi K., Behzad T.	Improvement of saccharification and ethanol production from rice straw by NMMO and [BMIM][OAc] pretreatments	Ind Crops Prod	41	408-413	2013		
34333	23053415	Park S., Kim Y.S., Rupasinghe S.G., Schuler M.A., Back K.	Rice P450 reductases differentially affect P450-mediated metabolism in bacterial expression systems.	Bioprocess Biosyst Eng	36(3)	325-31	2013	_,_,_	OsCPR1, CPR1,OsCPR2,OsCPR3
34334	23082824	Wang H., Zhang M., Guo R., Shi D., Liu B., Lin X., Yang C.	Effects of salt stress on ion balance and nitrogen metabolism of old and young leaves in rice (Oryza sativa L.).	BMC Plant Biol.	12	194	2012	GDH2,HKT4,HAK10,GS2,HAK16,ABC1,PTR6,SOS1,SKC1	OsGDH2,OsHKT4, OsHKT1;1, HKT1;1, OsHKT2, RNC4, OsHKT1;1-FL, OsHKT1;1-V1, OsHKT1;1-V2, OsHKT1;1-V3, OsHKT1;1-V4, OsHKT1;1-V5, OsHKT1;1-V6, OsHKT1;1-V7, OsHKT1;1-V8,OsHAK10,OsGS2, GLN2, OsGLN2, RGS31, OsRGS31,OsHAK16,OsABC1, SPL32, OsSPL32, OsGLU, OsFd-GOGAT, Fd-GOGAT, ABC1/ OsFd-GOGAT ,OsPTR6, OsNRT1;2, NRT1;2, OsNPF7.3, NPF7.3 ,OsSOS1, OsNHA1, NHA1, SOS1/NHX7, NHX7, OsNHX7,OsHKT8, HKT8, Os-HKT1;5, OsHKT1;5, HKT1;5, SKC1, qSKC-1(t), OsSKC1
34335	17301500	Ren H., Gu G., Long J., Yin Q., Wu T., Song T., Zhang S., Chen Z., Dong H.	Combinative effects of a bacterial type-III effector and a biocontrol bacterium on rice growth and disease resistance.	J. Biosci.	31(5)	617-27	2006	MSRMK2,ARF1,_,EXPA1	OsMSRMK2, OsMAPK5, OsMAP1, OsMPK3, OsBIMK1, OsMAPK2, MPK5, BIMK1, MAPK2, MAPK5, MPK3, OsMPK5, OsMAPK3, OsMAPK5b, MAPK3,OsARF1, arf1, OsARF23, ARF23,OsLP, PR-5, 14b,OsEXP1, EXPA1, OsEXPA1, OsaEXPa1.16, RiExA
34337	21422823	Campos-Soriano L., Segundo B.S.	New insights into the signaling pathways controlling defense gene expression in rice roots during the arbuscular mycorrhizal symbiosis.	Plant Signal Behav	6(4)	553-7	2011		
34342	21595879	Campos-Soriano L., G?mez-Ariza J., Bonfante P., San Segundo B.	A rice calcium-dependent protein kinase is expressed in cortical root cells during the presymbiotic phase of the arbuscular mycorrhizal symbiosis.	BMC Plant Biol.	11	90	2011		
34344	21621743	Yi X., Zhang Z., Zeng S., Tian C., Peng J., Li M., Lu Y., Meng Q., Gu M., Yan C.	Introgression of qPE9-1 allele, conferring the panicle erectness, leads to the decrease of grain yield per plant in japonica rice (Oryza sativa L.).	J Genet Genomics	38(5)	217-23	2011		
34345	21531900	Morey C., Mookherjee S., Rajasekaran G., Bansal M.	DNA free energy-based promoter prediction and comparative analysis of Arabidopsis and rice genomes.	Plant Physiol.	156(3)	1300-15	2011		
34346	20951807	Kim N.S., Yu H.Y., Chung N.D., Shin Y.J., Kwon T.H., Yang M.S.	Production of functional recombinant bovine trypsin in transgenic rice cell suspension cultures.	Protein Expr. Purif.	76(1)	121-6	2011		
34347	21530375	Wen X., Deng Q., Guo J., Yang S.	Ultra-sensitive determination of cadmium in rice and water by UV-vis spectrophotometry after single drop microextraction.	Spectrochim Acta A Mol Biomol Spectrosc	79(3)	508-12	2011		
34348	21763543	Hwang S.H., Yie S.W., Hwang D.J.	Heterologous expression of OsWRKY6 gene in Arabidopsis activates the expression of defense related genes and enhances resistance to pathogens.	Plant Sci.	181(3)	316-23	2011	_,WRKY6	OsPR1, OsPR1a, PR1a, PR1, OsPR1b, PR1b,OsWRKY6, WRKY-6, DLN103, OsDLN103
34349	21281270	Kim S.I., Andaya V.C., Tai T.H.	Cold sensitivity in rice (Oryza sativa L.) is strongly correlated with a naturally occurring I99V mutation in the multifunctional glutathione transferase isoenzyme GSTZ2.	Biochem. J.	435(2)	373-80	2011		
34350	21575196	Gu H., Zhu P., Jiao Y., Meng Y., Chen M.	PRIN: a predicted rice interactome network.	BMC Bioinformatics	12(1)	161	2011		
34351	21491156	Chen Y.H., Kao C.H.	Calcium is involved in nitric oxide- and auxin-induced lateral root formation in rice.	Protoplasma	249(1)	187-95	2012		
34356	21482531	Chen H.X., Zhou C.B., Xing Y.Z.	[A new rice dwarf1 mutant caused by a frame-shift mutation].	Yi Chuan	33(4)	397-403	2011		
34359	21113680	Gaur V.S., Singh U.S., Kumar A.	Transcriptional profiling and in silico analysis of Dof transcription factor gene family for understanding their regulation during seed development of rice Oryza sativa L.	Mol. Biol. Rep.	38(4)	2827-48	2011		
34362	21726383	DU Z., Xiao D., Wu J., Jia D., Yuan Z., Liu Y., Hu L., Han Z., Wei T., Lin Q., Wu Z., Xie L.	p2 of Rice stripe virus (RSV) interacts with OsSGS3 and is a silencing suppressor.	Mol. Plant Pathol.	12(8)	808-14	2011	TSP	OsSGS3, SGS3, OsSGS3a, SGS3a, OsTSP
34363	21533902	Ma J., Song Y., Wu B., Jiang M., Li K., Zhu C., Wen F.	Production of transgenic rice new germplasm with strong resistance against two isolations of Rice stripe virus by RNA interference.	Transgenic Res.	20(6)	1367-77	2011		
34365	21595523	Zhang G., Cheng Z., Zhang X., Guo X., Su N., Jiang L., Mao L., Wan J.	Double repression of soluble starch synthase genes SSIIa and SSIIIa in rice (Oryza sativa L.) uncovers interactive effects on the physicochemical properties of starch.	Genome	54(6)	448-59	2011		
34371	21678052	Gaur V.S., Singh U.S., Gupta A.K., Kumar A.	Understanding the differential nitrogen sensing mechanism in rice genotypes through expression analysis of high and low affinity ammonium transporter genes.	Mol. Biol. Rep.	39(3)	2233-41	2011		
34377	21360198	Kwon S.W., Cho Y.C., Lee J.H., Suh J.P., Kim J.J., Kim M.K., Choi I.S., Hwang H.G., Koh H.J., Kim Y.G.	Identification of quantitative trait loci associated with rice eating quality traits using a population of recombinant inbred lines derived from a cross between two temperate japonica cultivars.	Mol. Cells	31(5)	437-45	2011		
34382	21696979	Lidon F.C., Ramalho J.C.	Impact of UV-B irradiation on photosynthetic performance and chloroplast membrane components in Oryza sativa L.	J. Photochem. Photobiol. B, Biol.	104(3)	457-66	2011		
34385	21562821	Tran N.A., Daygon V.D., Resurreccion A.P., Cuevas R.P., Corpuz H.M., Fitzgerald M.A.	A single nucleotide polymorphism in the Waxy gene explains a significant component of gel consistency.	Theor. Appl. Genet.	123(4)	519-25	2011	WX1	wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx
34388	21688166	Chen Y., Tian J.C., Wang W., Fang Q., Akhtar Z.R., Peng Y.F., Cui H., Guo Y.Y., Song Q.S., Ye G.Y.	Bt rice expressing Cry1Ab does not stimulate an outbreak of its non-target herbivore, Nilaparvata lugens.	Transgenic Res.	21(2)	279-91	2011		
34398	21489969	Parlanti S., Kudahettige N.P., Lombardi L., Mensuali-Sodi A., Alpi A., Perata P., Pucciariello C.	Distinct mechanisms for aerenchyma formation in leaf sheaths of rice genotypes displaying a quiescence or escape strategy for flooding tolerance.	Ann. Bot.	107(8)	1335-43	2011	ACO1,SUB1A,APX1	OsACO1, ACO,Sub1A, Sub1A-1, Sub1A-2, OsSUB1A,OsAPX1, APXa, OsAPXa, OsAPx01, OsAPx1, OSAPX1, APx1, cAPX, APX2, cAPXa, OscAPXa
34400	21385389	Ding Z., Wang C., Chen S., Yu S.	Diversity and selective sweep in the OsAMT1;1 genomic region of rice.	BMC Evol. Biol.	11	61	2011	AMT1;1	OsAMT1;1, OsAMT1:1, OsAMT1, AMT1-1, AMT1, OsAMT1p, OsAMT1-1, Osamt1-1, "OsAMT1,1", OsAMT1.1, AMT1.1, FCO12
34402	21421424	Bonnecarr?re V., Borsani O., D?az P., Capdevielle F., Blanco P., Monza J.	Response to photoxidative stress induced by cold in japonica rice is genotype dependent.	Plant Sci.	180(5)	726-32	2011		
34406	21684871	Chen J., Luo W.X., Li M., Luo Q.	[Chromosome recombination in rice meiosis].	Yi Chuan	33(6)	648-53	2011		
34408	21414017	Ranathunge K., Lin J., Steudle E., Schreiber L.	Stagnant deoxygenated growth enhances root suberization and lignifications, but differentially affects water and NaCl permeabilities in rice (Oryza sativa L.) roots.	Plant Cell Environ.	34(8)	1223-40	2011		
34409	21533176	Seo Y.S., Chern M., Bartley L.E., Han M., Jung K.H., Lee I., Walia H., Richter T., Xu X., Cao P., Bai W., Ramanan R., Amonpant F., Arul L., Canlas P.E., Ruan R., Park C.J., Chen X., Hwang S., Jeon J.S., Ronald P.C.	Towards establishment of a rice stress response interactome.	PLoS Genet.	7(4)	e1002020	2011		
34412	21296585	Gimeno-Gilles C., Gervais M.L., Planchet E., Satour P., Limami A.M., Lelievre E.	A stress-associated protein containing A20/AN1 zing-finger domains expressed in Medicago truncatula seeds.	Plant Physiol. Biochem.	49(3)	303-10	2011	SAP8	Osi-SAP8, OsiSAP8, OsSAP8, OsSAP1, SAP1
34415	21493662	Noguchi J., Chaen K., Vu N.T., Akasaka T., Shimada H., Nakashima T., Nishi A., Satoh H., Omori T., Kakuta Y., Kimura M.	Crystal structure of the branching enzyme I (BEI) from Oryza sativa L with implications for catalysis and substrate binding.	Glycobiology	21(8)	1108-16	2011		
34417	21468744	Somyong S., Munkvold J.D., Tanaka J., Benscher D., Sorrells M.E.	Comparative genetic analysis of a wheat seed dormancy QTL with rice and Brachypodium identifies candidate genes for ABA perception and calcium signaling.	Funct. Integr. Genomics	11(3)	479-90	2011		
34418	21553108	Zhang Z., Wang H., Wang X., Bi Y.	Nitric oxide enhances aluminum tolerance by affecting cell wall polysaccharides in rice roots.	Plant Cell Rep.	30(9)	1701-11	2011		
34420	21549224	Zhao X.L., Shi Z.Y., Peng L.T., Shen G.Z., Zhang J.L.	An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15.	N Biotechnol	28(6)	788-97	2011	SE1,GI,_,PIL15,PIL12,TOC1,PIL13,PIL14,PIL11,_,PIL16	Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, OsHd1,  Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,OsGI, Gi, Os-GI,OsHFR, OsbHLH101,OsPIL15, OsbHLH105, PIF3, OsPIF3,OsPIL12, OsbHLH103, bHLH103,OsTOC1, OsPRR1, Os-PRR1, PRR1, OsRRA21, OsCCT07,OsPIL1, OsPIL13, OsbHLH152, bHLH152, PIF7, OsPIF7, OsPIF4, PIF4, OsPIF1,OsPIL14, OsbHLH104, bHLH104, OsPIF14, PIF14, OsPIF14alpha, OsPIF14beta,OsPIL11, OsbHLH102, bHLH102, PIF4, OsPIF4,OsLF, LF, OsbHLH119,APG, OsPIL16, OsbHLH106
34425	21451255	Lee S.K., Kim B.G., Kwon T.R., Jeong M.J., Park S.R., Lee J.W., Byun M.O., Kwon H.B., Matthews B.F., Hong C.B., Park S.C.	Overexpression of the mitogen-activated protein kinase gene OsMAPK33 enhances sensitivity to salt stress in rice (Oryza sativa L.).	J. Biosci.	36(1)	139-51	2011		
34426	21486304	Yan M., Fan X., Feng H., Miller A.J., Shen Q., Xu G.	Rice OsNAR2.1 interacts with OsNRT2.1, OsNRT2.2 and OsNRT2.3a nitrate transporters to provide uptake over high and low concentration ranges.	Plant Cell Environ.	34(8)	1360-72	2011	NRT2.2,NRT2.1,NAR2.1,NAR2.2,HTNE	OsNRT2.2, OsNRT2.1,OsNRT2.1, OsNRT2.2,OsNAR2.1, OsNRT3.1A,OsNAR2.2, OsNRT3.1B,NRT2.3, OsNRT2.3, OsNRT2;1, OsNRT2.3a, OsNRT2.3b, OsNRT2;3a, OsNRT2.5 
34430	21731454	Xu S., Hu B., He Z., Ma F., Feng J., Shen W., Yang J.	Enhancement of Salinity Tolerance during Rice Seed Germination by Presoaking with Hemoglobin.	Int J Mol Sci	12(4)	2488-501	2011	CATA,SODCC1,SODA1,APX1	CATA1, Cat A1*, OSCAT-A, Cat2, CatA1, CAT-A, OsCatA, OsCAT, CAT, catA, OSCATA, OsCATc, OsCATA, OsCAT1A, CAT1, OsCAT1, OsCATC, OsCAT2,sodCc1, SODCC.1, sodA, RSODA, OsSOD1, OsCSD2, OsSodA, SodCc2, OsSODA1, SODCc1-Cu/Zn, OsCu/Zn-SOD2, Cu/Zn-SOD2, OsCSD1.2, CSD1.2, OsSODCc1-Cu/Zn, SODCc1-Cu/Zn, CuZnSOD1, Cu/ZnSOD1, OsCu/ZnSOD1, OsCSD4, CDS4, CuZnSOD4, OsCuZnSOD1, OsCSD1, CSD1, OsSOD2,SodA1, OsSODA1, Mn-SOD, Mn- SOD, OsMSD, MnSOD, OsMnSOD, MnSOD1, OsMnSOD1,OsAPX1, APXa, OsAPXa, OsAPx01, OsAPx1, OSAPX1, APx1, cAPX, APX2, cAPXa, OscAPXa
34434	21633891	Zhang Y.M., Zheng Y.M., Xiao N., Wang L.N., Zhang Y., Fang R.X., Chen X.Y.	Functional analysis of the HS185 regulatory element in the rice HSP70 promoter.	Mol. Biol. Rep.	39(2)	1649-57	2011		
34436	21509472	Liang Y.S., Zhang Q.J., Wang S.Q., Cao L.Y., Gao Z.Q., Li P., Cheng S.H.	Microsatellite Analysis of Homozygosity Progression of Heterozygous Genotypes Segregating in the Rice Subspecies Cross Pei'ai64s/Nipponbare.	Biochem. Genet.	49(9-10)	611-24	2011		
34438	21534978	Zhou G., Wang X., Yan F., Wang X., Li R., Cheng J., Lou Y.	Genome-wide transcriptional changes and defence-related chemical profiling of rice in response to infestation by the rice striped stem borer Chilo suppressalis.	Physiol Plant	143(1)	21-40	2011		
34439	21741836	Fukui K., Ito S., Ueno K., Yamaguchi S., Kyozuka J., Asami T.	New branching inhibitors and their potential as strigolactone mimics in rice.	Bioorg. Med. Chem. Lett.	21(16)	4905-8	2011		
34442	21521631	Sansenya S., Opassiri R., Kuaprasert B., Chen C.J., Cairns J.R.	The crystal structure of rice (Oryza sativa L.) Os4BGlu12, an oligosaccharide and tuberonic acid glucoside-hydrolyzing beta-glucosidase with significant thioglucohydrolase activity.	Arch. Biochem. Biophys.	510(1)	62-72	2011	BGLU10,BGLU12,BGLU7,BGLU6,BGLU26,BGLU37,BGLU30,BGLU28,BGLU8,BGLU24,BGLU27,BGLU29,BGLU9,BGLU35,BGLU13,BGLU11,BGLU31	Os4bglu10, Os4BGlu10,Os4bglu12, Os4BGlu12, 4BGlu12, OsTAGG2, TAGG2,Os3bglu7, Os3BGlu7, 3BGLU7, BGlu7, BGlu1, bglu1,Os3bglu6, Os3BGlu6, 3BGlu6,Os7bglu26, Os7BGlu26,Os11bglu37, OsBGlu37 ,Os9bglu30, OsBGlu30, bglu 2, bglu2, BGlu2,Os8bglu28, OsBGlu28,Os3bglu8, Os3BGlu8 ,Os6bglu24, Os6BGlu24, 6BGlu24,Os8bglu27, OsBGlu27,Os9bglu29, OsBGlu29, OsBGLU29,Os4bglu9, Os4BGlu9,Os11bglu35, OsBGlu35 ,OsTAGG1, TAGG1, Os4BGlu13, 4BGlu13,Os4bglu11, Os4BGlu11,Os9bglu31, Os9BGlu31 
34443	21554757	Fassetti F., Leone O., Palopoli L., Rombo S.E., Saiardi A.	IP6K gene identification in plant genomes by tag searching.	BMC Proc	5 Suppl 2	S1	2011	_	OsIPK2, IPK2, IP6K
34447	21423286	Fu J.D., Yan Y.F., Kim M.Y., Lee S.H., Lee B.W.	Population-specific quantitative trait loci mapping for functional stay-green trait in rice (Oryza sativa L.).	Genome	54(3)	235-43	2011		
34449	21417378	Hanashiro I., Higuchi T., Aihara S., Nakamura Y., Fujita N.	Structures of starches from rice mutants deficient in the starch synthase isozyme SSI or SSIIIa.	Biomacromolecules	12(5)	1621-8	2011		
34451	21505761	Li T., Zhang M., Qu Y., Ren Z., Zhang J., Guo Y., Heong K.L., Villareal B., Zhong Y., Ma E.	Population genetic structure and phylogeographical pattern of rice grasshopper, Oxya hyla intricata, across Southeast Asia.	Genetica	139(4)	511-24	2011		
34456	20821243	Ray S., Dansana P.K., Giri J., Deveshwar P., Arora R., Agarwal P., Khurana J.P., Kapoor S., Tyagi A.K.	Modulation of transcription factor and metabolic pathway genes in response to water-deficit stress in rice.	Funct. Integr. Genomics	11(1)	157-78	2011		
34475	21247905	Xu L., Henke M., Zhu J., Kurth W., Buck-Sorlin G.	A functional-structural model of rice linking quantitative genetic information with morphological development and physiological processes.	Ann. Bot.	107(5)	817-28	2011		
34479	21677384	Singh V.K., Upadhyay P., Sinha P., Mall A.K., Jaiswal S.K., Singh A., Ellur R.K., Biradar S., Sundaram R.M., Singh S., Ahmed I., Mishra B., Singh A.K., Kole C.	Determination of genetic relationships among elite thermosensitive genic male sterile lines (TGMS) of rice (Oryza sativa L.) employing morphological and simple sequence repeat (SSR) markers.	J. Genet.	90(1)	11-9	2011		
34483	21594293	Cao S., Xu W., Luo Y., He X., Yuan Y., Ran W., Liang L., Huang K.	Metabonomics study of transgenic Bacillus thuringiensis rice (T2A-1) meal in a 90-day dietary toxicity study in rats.	Mol Biosyst	7(7)	2304-10	2011		
34485	21528404	Mallikarjuna G., Mallikarjuna K., Reddy M.K., Kaul T.	Expression of OsDREB2A transcription factor confers enhanced dehydration and salt stress tolerance in rice (Oryza sativa L.).	Biotechnol. Lett.	33(8)	1689-97	2011	DREB2A	OsDREB2A, OsDREB2a, ERF40, OsERF#040, OsERF040, OsERF40, AP2/EREBP#167, AP2/EREBP167
34490	21416328	Yang X., Huang J., Wu Y., Wang J., Wang P., Wang X., Huete A.R.	Estimating biophysical parameters of rice with remote sensing data using support vector machines.	Sci China Life Sci	54(3)	272-81	2011		
34494	21459764	Miyao M., Masumoto C., Miyazawa S., Fukayama H.	Lessons from engineering a single-cell C(4) photosynthetic pathway into rice.	J. Exp. Bot.	62(9)	3021-9	2011		
34495	21444336	Mondrag?n-Palomino M., Trontin C.	High time for a roll call: gene duplication and phylogenetic relationships of TCP-like genes in monocots.	Ann. Bot.	107(9)	1533-44	2011	FC1,_,_,_,_,_,_,PCF7,PCF1,TIG1,PCF3,REP1,PCF5,PCF8,_,TCP18,TCP9,TCP5,TCP19,TCP21,PCF2,TCP7,PCF6	fc1, OsTB1, tb1, OsTB1/FC1, Os TB1, TB1, OsFC1, MP3, OsMP3,OsTCP10, OsSTA77, TCP10, STA77,OsTCP17, TCP17,OsTCP25, TCP25,OsTCP20, TCP20,OsTCP28, TCP28,OsTCP27, TCP27,OsPCF7,OsPCF1,OsTCP22, OsTCP15, TCP22, TCP15, OsTIG1,OsPCF3,OsTCP24, REP1, TCP24, SDP1, SDP1/REP1, OsTb2, Tb2 ,OsPCF5,OsPCF8,OsTCP6, TCP6,OsTCP18,OsTCP9, OsTCP5, TCP5,OsTCP5,OsTCP19,OsTCP21,OsPCF2,OsTCP7, CHE,OsPCF6
34511	21399992	Jiang W., Lee J., Jin Y.M., Qiao Y., Piao R., Jang S.M., Woo M.O., Kwon S.W., Liu X., Pan H.Y., Du X., Koh H.J.	Identification of QTLs for seed germination capability after various storage periods using two RIL populations in rice.	Mol. Cells	31(4)	385-92	2011		
34513	21763534	Cho K., Han Y., Woo J.C., Baudisch B., Kl?sgen RB., Oh S., Han J., Han O.	Cellular localization of dual positional specific maize lipoxygenase-1 in transgenic rice and calcium-mediated membrane association.	Plant Sci.	181(3)	242-8	2011		
34515	21477784	Hayashi-Tsugane M., Maekawa M., Qian Q., Kobayashi H., Iida S., Tsugane K.	A rice mutant displaying a heterochronically elongated internode carries a 100 kb deletion.	J Genet Genomics	38(3)	123-8	2011		
34516	21634036	Zhou Y.F., Zhang X.Y., Xue Q.Z.	Fine mapping and candidate gene prediction of the photoperiod and thermo-sensitive genic male sterile gene pms1(t) in rice.	J Zhejiang Univ Sci B	12(6)	436-47	2011	PMS1	pms1*(Pms1,pgms,ms1P), pms1*, Pms1, ms1-P, pms1(t)*, pms1(t)
34517	21132544	Muthurajan R., Shobbar Z.S., Jagadish S.V., Bruskiewich R., Ismail A., Leung H., Bennett J.	Physiological and proteomic responses of rice peduncles to drought stress.	Mol. Biotechnol.	48(2)	173-82	2011		
34524	21410711	Chen C.P., Frei M., Wissuwa M.	The OzT8 locus in rice protects leaf carbon assimilation rate and photosynthetic capacity under ozone stress.	Plant Cell Environ.	34(7)	1141-9	2011		
34526	21456058	Moon H.I., Lee J.H., Lee Y.C., Kim S.K.	Inhibitory Effects of Isolated Compounds from Black Coloured Rice Bran on the Complement Classical Pathway.	Phytother Res	25(9)	1418-20	2011		
34529	21295625	Bharathi Y., Vijaya Kumar S., Pasalu I.C., Balachandran S.M., Reddy V.D., Rao K.V.	Pyramided rice lines harbouring Allium sativum (asal) and Galanthus nivalis (gna) lectin genes impart enhanced resistance against major sap-sucking pests.	J. Biotechnol.	152(3)	63-71	2011		
34533	21423767	Guyot R., Garavito A., Gavory F., Samain S., Tohme J., Ghesqui?re A., Lorieux M.	Patterns of sequence divergence and evolution of the S orthologous regions between Asian and African cultivated rice species.	PLoS ONE	6(3)	e17726	2011		
34535	21631950	Tao D., Xu P., Zhou J., Deng X., Li J., Deng W., Yang J., Yang G., Li Q., Hu F.	Cytoplasm affects grain weight and filled-grain ratio in indica rice.	BMC Genet.	12	53	2011		
34536	21551283	Ikeda S., Okubo T., Takeda N., Banba M., Sasaki K., Imaizumi-Anraku H., Fujihara S., Ohwaki Y., Ohshima K., Fukuta Y., Eda S., Mitsui H., Hattori M., Sato T., Shinano T., Minamisawa K.	The genotype of the calcium/calmodulin-dependent protein kinase gene (CCaMK) determines bacterial community diversity in rice roots under paddy and upland field conditions.	Appl. Environ. Microbiol.	77(13)	4399-405	2011	DMI3	OsDMI3, OsCCaMK1, OsCCaMK, OsCCAMK, CCAMK
34537	21453428	Ham J.H., Melanson R.A., Rush M.C.	Burkholderia glumae: next major pathogen of rice?	Mol. Plant Pathol.	12(4)	329-39	2011		
34541	21175644	Pan J., Cui K., Wei D., Huang J., Xiang J., Nie L.	Relationships of non-structural carbohydrates accumulation and translocation with yield formation in rice recombinant inbred lines under two nitrogen levels.	Physiol Plant	141(4)	321-31	2011		
34551	21780582	Liu H.J., Chen L.G., Zhu P.P., Sheng J., Zhang Y.F., Zheng J.C.	[Effect of hyacinth mulching on rice (Oryza sativa L.) uptake and utilization of nitrogen].	Huan Jing Ke Xue	32(5)	1292-8	2011		
34554	21061188	Swapna L., Khurana R., Kumar S.V., Tyagi A.K., Rao K.V.	Pollen-specific expression of Oryza sativa indica pollen allergen gene (OSIPA) promoter in rice and Arabidopsis transgenic systems.	Mol. Biotechnol.	48(1)	49-59	2011		
34555	21163697	Shinozaki Y., Kitamoto H.K.	Ethanol production from ensiled rice straw and whole-crop silage by the simultaneous enzymatic saccharification and fermentation process.	J. Biosci. Bioeng.	111(3)	320-5	2011		
34560	21323642	Morrone D., Hillwig M.L., Mead M.E., Lowry L., Fulton D.B., Peters R.J.	Evident and latent plasticity across the rice diterpene synthase family with potential implications for the evolution of diterpenoid metabolism in the cereals.	Biochem. J.	435(3)	589-95	2011		
34568	21460234	Yang X., Tan S.H., Teh Y.J., Yuan Y.A.	Structural implications into dsRNA binding and RNA silencing suppression by NS3 protein of Rice Hoja Blanca Tenuivirus.	RNA	17(5)	903-11	2011		
34572	21556691	Su C.F., Kuo I.C., Chen P.W., Huang C.H., Seow S.V., Chua K.Y., Yu S.M.	Characterization of an immunomodulatory Der p 2-FIP-fve fusion protein produced in transformed rice suspension cell culture.	Transgenic Res.	21(1)	177-92	2012		
34574	21448341	Yoshida T., Kimura E., Koike S., Nojima J., Futai E., Sasagawa N., Watanabe Y., Ishiura S.	Transgenic rice expressing amyloid beta-peptide for oral immunization.	Int. J. Biol. Sci.	7(3)	301-7	2011		
34577	21451246	Khattri A., Nandy S., Srivastava V.	Heat-inducible Cre-lox system for marker excision in transgenic rice.	J. Biosci.	36(1)	37-42	2011		
34582	21210840	Kang K., Kong K., Park S., Natsagdorj U., Kim Y.S., Back K.	Molecular cloning of a plant N-acetylserotonin methyltransferase and its expression characteristics in rice.	J. Pineal Res.	50(3)	304-9	2011		
34584	21494323	Qian D., Jiang L., Lu L., Wei C., Li Y.	Biochemical and structural properties of cyanases from Arabidopsis thaliana and Oryza sativa.	PLoS ONE	6(3)	e18300	2011		
34585	21520392	Kong C.H., Chen X.H., Hu F., Zhang S.Z.	Breeding of commercially acceptable allelopathic rice cultivars in China.	Pest Manag. Sci.	67(9)	1100-6	2011		
34587	21677691	Ishii S., Ohno H., Tsuboi M., Otsuka S., Senoo K.	Identification and isolation of active N(2)O reducers in rice paddy soil.	ISME J	5(12)	1936-45	2011		
34601	21113019	Li T., Li H., Zhang Y.X., Liu J.Y.	Identification and analysis of seven H?O?-responsive miRNAs and 32 new miRNAs in the seedlings of rice (Oryza sativa L. ssp. indica).	Nucleic Acids Res.	39(7)	2821-33	2011	MIR812M,MIR812N,MIR1862G,MIR3981,MIR2873B,MIR3982	miR812m, osa-miR812m, osa-MIR812m,miR812n, osa-miR812n, osa-MIR812nosa-miR812n-3p osa-miR812n-5p,miR1862g, osa-miR1862g, osa-MIR1862g,miR3981, osa-miR3981, osa-MIR3981osa-miR3981-3p osa-miR3981-5p,miR2873b, osa-miR2873b, osa-MIR2873b,miR3982, osa-miR3982, osa-MIR3982osa-miR3982-3p osa-miR3982-5p
34603	21499832	Han M.J., Jung K.H., Yi G., An G.	Rice Importin beta1 gene affects pollen tube elongation.	Mol. Cells	31(6)	523-30	2011	IMPB1,IMPBETA1	Importin beta 1,OsImpbeta1, OsImp beta 1
34611	21416320	Wu J., Wang C., Du Z., Cai L., Hu M., Wu Z., Li Y., Xie L.	Identification of Pns12 as the second silencing suppressor of Rice gall dwarf virus.	Sci China Life Sci	54(3)	201-8	2011		
34612	21703279	Jingbo X., Silan Z., Feng S., Huijuan X., Xuehai H., Xiaohui N., Zhi L.	Using the concept of pseudo amino acid composition to predict resistance gene against Xanthomonas oryzae pv. oryzae in rice: an approach from chaos games representation.	J. Theor. Biol.	284(1)	16-23	2011		
34616	21213008	Mustafiz A., Singh A.K., Pareek A., Sopory S.K., Singla-Pareek SL.	Genome-wide analysis of rice and Arabidopsis identifies two glyoxalase genes that are highly expressed in abiotic stresses.	Funct. Integr. Genomics	11(2)	293-305	2011		
34627	21533550	Cho J.I., Kim H.B., Kim C.Y., Hahn T.R., Jeon J.S.	Identification and characterization of the duplicate rice sucrose synthase genes OsSUS5 and OsSUS7 which are associated with the plasma membrane.	Mol. Cells	31(6)	553-61	2011	RSUS6,RSUS5,RSUS7,RSUS4,RSUS2,RSUS3,RSUS1	SUS6, SS6, OsScS6, RSs6, RSus6, OsSUS6,SUS5, SS5, OsScS5, RSs5, RSus5, OsSUS5,SUS7, SS7, OsScS7, RSs7, RSus7, OsSUS7,SUS4, SS4, OsScS4, RSs4, RSus4, OsSUS4,sus2, RSus2(t), SUS2, SS1, OsScS1, RSs1, RSus2, OsSUS2, RSS1, RSus1, OsSusy2, Susy2, OsRSUS1, RSUS1,RSus3(t), SUS3, SS3, OsScS3, RSs3, RSus3, OsSUS3, RSS3, OsEnS-111, Susy3, OsSusy3,sus1, RSus1(t), SUS1, SS2, OsScS2, RSs2, RSus1, SuSy1, OsSUS1, RSS2, RSus2, OsRSUS1
34633	21370396	Song X., Wang Z., Qiang S.	Agronomic performance of F1, F2 and F3 hybrids between weedy rice and transgenic glufosinate-resistant rice.	Pest Manag. Sci.	67(8)	921-31	2011		
34634	21481190	Al Atalah B., Fouquaert E., Vanderschaeghe D., Proost P., Balzarini J., Smith D.F., Roug? P., Lasanajak Y., Callewaert N., Van Damme EJ.	Expression analysis of the nucleocytoplasmic lectin 'Orysata' from rice in Pichia?pastoris.	FEBS J.	278(12)	2064-79	2011		
34637	21686154	Sinha D.K., Lakshmi M., Anuradha G., Rahman S.J., Siddiq E.A., Bentur J.S., Nair S.	Serine proteases-like genes in the asian rice gall midge show differential expression in compatible and incompatible interactions with rice.	Int J Mol Sci	12(5)	2842-52	2011		
34640	21526825	Ito R., Mori K., Hashimoto I., Nakano C., Sato T., Hoshino T.	Triterpene cyclases from Oryza sativa L.: cycloartenol, parkeol and achilleol B synthases.	Org. Lett.	13(10)	2678-81	2011		
34643	21633982	Tanaka J., Nakamura S., Tsuruma K., Shimazawa M., Shimoda H., Hara H.	Purple Rice (Oryza sativa L.) Extract and its Constituents Inhibit VEGF-induced Angiogenesis.	Phytother Res	26(2)	214-22	2012		
34644	21763536	Karthikeyan A., Pandian S.K., Ramesh M.	Agrobacterium-mediated transformation of leaf base derived callus tissues of popular indica rice (Oryza sativa L. sub sp. indica cv. ADT 43).	Plant Sci.	181(3)	258-68	2011		
34647	21607616	Ding C., You J., Wang S., Liu Z., Li G., Wang Q., Ding Y.	A proteomic approach to analyze nitrogen- and cytokinin-responsive proteins in rice roots.	Mol. Biol. Rep.	39(2)	1617-26	2012		
34658	21388921	Naeimi S., Kocsub? S., Antal Z., Okhovvat S.M., Javan-Nikkhah M., V?gv?lgyi C., Kredics L.	Strain-specific SCAR markers for the detection of Trichoderma harzianum AS12-2, a biological control agent against Rhizoctonia solani, the causal agent of rice sheath blight.	Acta. Biol. Hung.	62(1)	73-84	2011		
34661	21504892	Muyle A., Serres-Giardi L., Ressayre A., Escobar J., Gl?min S.	GC-Biased Gene Conversion and Selection Affect GC Content in the Oryza Genus (rice).	Mol. Biol. Evol.	28(9)	2695-706	2011		
34663	21677387	Shen B., Yu W.D., Du J.H., Fan Y.Y., Wu J.R., Zhuang J.Y.	Validation and dissection of quantitative trait loci for leaf traits in interval RM4923-RM402 on the short arm of rice chromosome 6.	J. Genet.	90(1)	39-44	2011		
34668	21558459	Yang R., Tang Q., Wang H., Zhang X., Pan G., Wang H., Tu J.	Analyses of two rice (Oryza sativa) cyclin-dependent kinase inhibitors and effects of transgenic expression of OsiICK6 on plant growth and development.	Ann. Bot.	107(7)	1087-101	2011	CYCB2;2,KRP6,KRP3,KRP2,CYCA2;1,KRP5,CDKB2;1 ,CYCD4;1,KRP4,KRP1,CDC2-1	cycB2;2 (=cycOs2), cycB2;2, cycOs2, CycB2;2, CycOs2, CYCB2-2, CYCOS2, CycB2-Os2, CYCB2, CycB2;os;2, OsCycB2;2, Orysa;CycB2;2, OsCYCOS2, Os;cycB2;2, CYCB2.2, OsCYCB2.2,OsiICK4, Orysa;KRP6, OrysaICK4, Orysa;ICK4, OsKRP6, OsKRP5,OsiICK3, Orysa;KRP3, OrysaICK3, Orysa;ICK3,OsKRP2, OsiICK2, Orysa;KRP2, OrysaICK2, Orysa;ICK2,CycA2;1, CycA2;os;1, Orysa;CycA2;1, OsCYCA2;1, CYCA2.2,OsiICK5, Orysa;KRP5, OrysaICK5, Orysa;ICK5, OsKRP5, OsICK5, ICK5 ,Orysa;CDKB2;1, OsCDKB2;1, cdc2Os3, Oscdc20s-3, cdc20s-3, Orysa;CDKB;2, CYCB2.1, CDKB-2, OsCDKB-2,CycD2;1, CYCD2-1, Orysa;CycD2;1, OsCYCD2;1, Orysa;CycD4;1, CycD4;1, CYCD4-1, Orysa;CYCD4;1, cycD, OsCYCD4;1,,OsiICK6, Orysa;KRP4, OrysaICK6, Orysa;ICK6, OsKRP4, OsICK6, ICK6,OsiICK1, Orysa;KRP1, OrysaICK1, Orysa;ICK1, CDKI, OsICK1, ICK1, OsKRP1,cdc2Os-1, CDC2Os-1, CDKA-1, CDKA;1, Orysa;CDKA;1, OsCDKA;1, cdc2Os1, Rcdc2-1, OsCDKA1, CDKA1, CDC20S-1, OsCDC20S-1 
34671	21512221	Koide T., Ohnishi Y., Horinouchi S.	Characterization of recombinant beta-amylases from Oryza sativa.	Biosci. Biotechnol. Biochem.	75(4)	793-6	2011	BAMY1,BMY2,BMY6,BMY1,BMY4,BMY7,BMY10 ,_,BAMY4,BAMY2	OsSTA246, STA246, OsBamy1, Bamy1, BAM2, OsBAM2, OsBmy9, Bmy9, BMY5, OsBMY5,OsBMY2, OsBmy6, Bmy6,OsBMY6, BAM3, OsBAM3,OsBMY1 ,OsBmy4, Bmy4,OsSTA201, OsBmy7, Bmy7,OsBMY10, OsBES1-3, BES1-3,,OsBamy4, Bamy4,OsBamy2, Bamy2, OsBmy3, Bmy3, OsBMY4, BMY4
34681	21214879	Brauer E.K., Rochon A., Bi Y.M., Bozzo G.G., Rothstein S.J., Shelp B.J.	Reappraisal of nitrogen use efficiency in rice overexpressing glutamine synthetase1.	Physiol Plant	141(4)	361-72	2011		
34693	21474375	Watanabe M., Ichinose K., Sasano K., Ozaki Y., Tsuiki T., Hidaka H., Kanemoto S.	Effect of enzymatic treatment on sedimentation and flocculation abilities of solid particles in rice washing drainage and its relationship with protein profiles.	J. Biosci. Bioeng.	112(1)	67-70	2011		
34696	21385782	Torres Acosta JA., Fowke L.C., Wang H.	Analyses of phylogeny, evolution, conserved sequences and genome-wide expression of the ICK/KRP family of plant CDK inhibitors.	Ann. Bot.	107(7)	1141-57	2011	KRP7,KRP3,KRP2,KRP6,KRP5,KRP1,KRP4	Orysa;KRP7,OsiICK3, Orysa;KRP3, OrysaICK3, Orysa;ICK3,OsKRP2, OsiICK2, Orysa;KRP2, OrysaICK2, Orysa;ICK2,OsiICK4, Orysa;KRP6, OrysaICK4, Orysa;ICK4, OsKRP6, OsKRP5,OsiICK5, Orysa;KRP5, OrysaICK5, Orysa;ICK5, OsKRP5, OsICK5, ICK5 ,OsiICK1, Orysa;KRP1, OrysaICK1, Orysa;ICK1, CDKI, OsICK1, ICK1, OsKRP1,OsiICK6, Orysa;KRP4, OrysaICK6, Orysa;ICK6, OsKRP4, OsICK6, ICK6
34700	21554676	Deveshwar P., Bovill W.D., Sharma R., Able J.A., Kapoor S.	Analysis of anther transcriptomes to identify genes contributing to meiosis and male gametophyte development in rice.	BMC Plant Biol.	11	78	2011	PAIR2,PAIR3,SDS,DMC1A,RAD21-4,RMC1,PAIR1,MEL1	Pair2, OsPAIR2, OsASY1,,OsSDS, Orysa;SDS,OsDMC1A, OsDmc1A, Dmc1A, DMC1, OsDMC1, RiLIM15A, OsRad51,OsRad21-4, REC8, OsREC8, OsRAD21-4,MER3, mer3, OsMER3, RCK, OsRCK, Os-MER3,Pair1, OsPAIR1,mel1, OsMEL1, MEAL1, OsMEAL1, OsAGO5c 
34704	21394874	Yang Z., Chen H., Tang W., Hua H., Lin Y.	Development and characterisation of transgenic rice expressing two Bacillus thuringiensis genes.	Pest Manag. Sci.	67(4)	414-22	2011		
34706	21688039	Iqbal M.M., Nazir F., Ali S., Asif M.A., Zafar Y., Iqbal J., Ali G.M.	Over Expression of Rice chitinase Gene in Transgenic Peanut (Arachis hypogaea L.) Improves Resistance Against Leaf Spot.	Mol. Biotechnol.	50(2)	129-36	2012		
34712	21368906	Liu F., Conrad R.	Chemolithotrophic acetogenic H2/CO2 utilization in Italian rice field soil.	ISME J	5(9)	1526-39	2011		
34715	21741417	Sakamoto T., Hasunuma T., Hori Y., Yamada R., Kondo A.	Direct ethanol production from hemicellulosic materials of rice straw by use of an engineered yeast strain codisplaying three types of hemicellulolytic enzymes on the surface of xylose-utilizing Saccharomyces cerevisiae cells.	J. Biotechnol.	158(4)	203-10	2012		
34719	21701860	Takan J.P., Chipili J., Muthumeenakshi S., Talbot N.J., Manyasa E.O., Bandyopadhyay R., Sere Y., Nutsugah S.K., Talhinhas P., Hossain M., Brown A.E., Sreenivasaprasad S.	Magnaporthe oryzae Populations Adapted to Finger Millet and Rice Exhibit Distinctive Patterns of Genetic Diversity, Sexuality and Host Interaction.	Mol. Biotechnol.	50(2)	145-58	2012		
34720	21281657	Umate P.	Oxysterol binding proteins (OSBPs) and their encoding genes in Arabidopsis and rice.	Steroids	76(5)	524-9	2011		
34723	21565701	Koharudin L.M., Viscomi A.R., Montanini B., Kershaw M.J., Talbot N.J., Ottonello S., Gronenborn A.M.	Structure-function analysis of a CVNH-LysM lectin expressed during plant infection by the rice blast fungus Magnaporthe oryzae.	Structure	19(5)	662-74	2011		
34724	21040387	Shimizu T., Nakazono-Nagaoka E., Uehara-Ichiki T., Sasaya T., Omura T.	Targeting specific genes for RNA interference is crucial to the development of strong resistance to rice stripe virus.	Plant Biotechnol. J.	9(4)	503-12	2011		
34725	21525786	Chen C.J., Liu Q., Zhang Y.C., Qu L.H., Chen Y.Q., Gautheret D.	Genome-wide discovery and analysis of microRNAs and other small RNAs from rice embryogenic callus.	RNA Biol	8(3)	538-47	2011	MIR1863B,MIR5161,MIR5160,MIR5155,MIR2871A,MIR5145,MIR5146,MIR5148A,MIR5148B,MIR5148C,MIR5149,MIR5151,MIR5154,MIR5156,MIR5157A,MIR5157B,MIR5158,MIR5162,MIR5153,MIR5144	miR1863b, osa-miR1863b, osa-MIR1863b, osa-miR1863b.2, MIR1863b.2-3p,miR5161, osa-miR5161, osa-MIR5161, MIR5161-3p,miR5160, osa-miR5160, osa-MIR5160, MIR5160-3p,miR5155, osa-miR5155, osa-MIR5155, MIR5155-5p,miR2871a, osa-miR2871a, osa-MIR2871a, MIR2871a-5posa-miR2871a-3p osa-miR2871a-5p,miR5145, osa-miR5145, osa-MIR5145, MIR5145-5p,miR5146, osa-miR5146, osa-MIR5146, MIR5146-3p,miR5148a, osa-miR5148a, osa-MIR5148a, MIR5148a-3p,miR5148b, osa-miR5148b, osa-MIR5148b, MIR5148b-3p,miR5148c, osa-miR5148c, osa-MIR5148c, MIR5148c-3p,miR5149, osa-miR5149, osa-MIR5149, MIR5149-3p,miR5151, osa-miR5151, osa-MIR5151, MIR5151-5p,miR5154, osa-miR5154, osa-MIR5154, MIR5154-3p,miR5156, osa-miR5156, osa-MIR5156, MIR5156-5p,miR5157a, osa-miR5157a, osa-MIR5157a, MIR5157a-5p, MIR5157a-3p,miR5157b, osa-miR5157b, osa-MIR5157b, MIR5157b-5p, MIR5157b-3p,miR5158, osa-miR5158, osa-MIR5158, MIR5158-3p,miR5162, osa-miR5162, osa-MIR5162, MIR5162-5p,miR5153, osa-miR5153, osa-MIR5153, MIR5153-3p,miR5144, osa-miR5144, osa-MIR5144, MIR5144-5p, MIR5144-3posa-miR5144-3p osa-miR5144-5p
34739	21725029	Tao Z., Kou Y., Liu H., Li X., Xiao J., Wang S.	OsWRKY45 alleles play different roles in abscisic acid signalling and salt stress tolerance but similar roles in drought and cold tolerance in rice.	J. Exp. Bot.	62(14)	4863-74	2011	ABI5,NCED3,WRKY45,RAB16A,_,DREB1A,RAB16D,NCED2,DREB1B,ONAC2	OsABI5, OsbZIP10, OsABF1, OREB1, OsABI5-1, OsABI5-2, OsOREB1, OREB1 ,OSNCED3, OsNCED-3, OsNCED3, OsNCED3a, NCED3a, OsNCED4, NCED4, OsNECD2, OsNCED2b, NCED2b ,OsWRKY45, OsWRKY45-1, OsWRKY45-2, WRKY45-1, WRKY45-2,Rab16A, rab21, RAB21, OsRab21, OsRAB21, OsRAB-21, OsRab16A, OsLEA29, rab16A, OsRAB16A,RD22, OsBURP03, OsBURP3,OsDREB1A, Os DREB1A, CBF3, OsCBF3, OsDREB1A/OsCBF3, ERF24, OsERF24, OsERF024, OsERF#024, AP2/EREBP#114, AP2/EREBP114, OsDREBL,rab21, OsLEA26, Rab16D, OsRab16,OsNCED2, OsNced2, OsCCD4b, CCD4b, OsCCD4c, CCD4c,OsDREB1B, ERF31, OsERF031, OsERF#031, OsERF31, AP2/EREBP#169, AP2/EREBP169, OsDREB1b, OsDREB1C, OsCBF1, CBF1,SNAC1, snac1, OsNAC9, ONAC002, ONAC2, ONAC033, ONAC33, ONAC043, ONAC43, ONAC044, ONAC44, OsNAC19, NAC19, SNAC1/ONAC002, OsSNAC1, OsNAC9, OsNAC1
34741	21922807	Shi S.W., Li Y.E., Wan Y.F., Qin X.B., Gao Q.Z.	[Observation for CH4 and N2O emissions under different rates of nitrogen and phosphate fertilization in double rice fields].	Huan Jing Ke Xue	32(7)	1899-907	2011		
34743	21725856	Ray S., Kapoor S., Tyagi A.K.	Analysis of transcriptional and upstream regulatory sequence activity of two environmental stress-inducible genes, NBS-Str1 and BLEC-Str8, of rice.	Transgenic Res.	21(2)	351-66	2012	NBS-STR1,BLEC-STR8	NBS-Str1, OsNBS-Str1,BLEC-Str8, OsBLEC-Str8
34744	21750695	Redman R.S., Kim Y.O., Woodward C.J., Greer C., Espino L., Doty S.L., Rodriguez R.J.	Increased fitness of rice plants to abiotic stress via habitat adapted symbiosis: a strategy for mitigating impacts of climate change.	PLoS ONE	6(7)	e14823	2011		
34745	21802967	Wang J., Hou Q., Dong L., Liu Y., Liu C.	QM/MM studies on the glycosylation mechanism of rice BGlu1 beta-glucosidase.	J. Mol. Graph. Model.	30	148-52	2011		
34759	21869469	Bai X.F., Luo L.J., Yan W.H., Kovi M.R., Xing Y.Z.	Quantitative trait loci for rice yield-related traits using recombinant inbred lines derived from two diverse cultivars.	J. Genet.	90(2)	209-15	2011		
34765	21933130	Abe Y., Matsusita K., Komatu S., Iwasaki Y.	Identification of Heterotrimeric G Protein alpha and beta Subunits in Rice.	Protein Pept. Lett.	19(3)	277-81	2012		
34766	21887580	Sharma R., Tan F., Jung K.H., Sharma M.K., Peng Z., Ronald P.C.	Transcriptional dynamics during cell wall removal and regeneration reveals key genes involved in cell wall development in rice.	Plant Mol. Biol.	77(4-5)	391-406	2011		
34771	21949821	Ji X., Qian D., Wei C., Ye G., Zhang Z., Wu Z., Xie L., Li Y.	Movement protein Pns6 of rice dwarf phytoreovirus has both ATPase and RNA binding activities.	PLoS ONE	6(9)	e24986	2011		
34775	21930802	Li H.J., Li X.H., Xiao J.H., Wing R.A., Wang S.P.	Ortholog Alleles at Xa3/Xa26 Locus Confer Conserved Race-Specific Resistance against Xanthomonas oryzae in Rice.	Mol Plant	5(1)	281-90	2012	TRKE,MRKc,TRKH,_,MRKa,TRKG,MRKd,TRKF,TRKI,TRKJ,XA3	TRKe, Rke, NRKe, 9RKe ,MRKc, RKc, TRKc,TRKh,RKb2,MRKa, RKa, TRKa,TRKg,MRKd, RKd, TRKd,TRKf,TRKi,TRKj,Xa-3, Xa3 (Xa4b, Xa6, Xa9, Xa w), Xa3, Xaw, Xa6, Xa9, Xa4-b, XA26, Xa26(t), Xa26(t)*, Xa26, RKb, MRKb, MRKB, TRKb, Xa3/Xa26
34777	21977025	Himi E., Maekawa M., Noda K.	Differential expression of three flavanone 3-hydroxylase genes in grains and coleoptiles of wheat.	Int J Plant Genomics	2011	369460	2011	ANS,F3H1,2ODD15	ANS, OsANS1, ANS1, LDOX, LDOX1, OsLDOX, OsLDOX1,OsF3H-1, F3H-1, OsF3H1, OsF3H, F3H, OsF3H3, F3H3,FLS, OsFLS, 2-ODD15, Os2-ODD15, Os2ODD15, OsFLS1, FLS1
34779	21912860	Choi M.S., Woo M.O., Koh E.B., Lee J., Ham T.H., Seo H.S., Koh H.J.	Teosinte Branched 1 modulates tillering in rice plants.	Plant Cell Rep.	31(1)	57-65	2012		
34780	21926092	Manavalan L.P., Chen X., Clarke J., Salmeron J., Nguyen H.T.	RNAi-mediated disruption of squalene synthase improves drought tolerance and yield in rice.	J. Exp. Bot.	63(1)	163-75	2012		
34783	21078052	Wakasa Y., Zhao H., Hirose S., Yamauchi D., Yamada Y., Yang L., Ohinata K., Yoshikawa M., Takaiwa F.	Antihypertensive activity of transgenic rice seed containing an 18-repeat novokinin peptide localized in the nucleolus of endosperm cells.	Plant Biotechnol. J.	9(7)	729-35	2011		
34784	21641919	Shang X.Y., Li J.J., Liu M.T., Li S., Liu Y., Wang Y.F., Huang X., Jin Z.L.	Cytotoxic steroids from Monascus purpureus-fermented rice.	Steroids	76(10-11)	1185-9	2011		
34786	21912852	Li W.J., Dai L.L., Chai Z.J., Yin Z.J., Qu L.Q.	Evaluation of seed storage protein gene 3'-untranslated regions in enhancing gene expression in transgenic rice seed.	Transgenic Res.	21(3)	545-53	2012		
34787	21926094	Zhang H., Li H., Yuan L., Wang Z., Yang J., Zhang J.	Post-anthesis alternate wetting and moderate soil drying enhances activities of key enzymes in sucrose-to-starch conversion in inferior spikelets of rice.	J. Exp. Bot.	63(1)	215-27	2012		
34788	21114612	Mito T., Seki M., Shinozaki K., Ohme-Takagi M., Matsui K.	Generation of chimeric repressors that confer salt tolerance in Arabidopsis and rice.	Plant Biotechnol. J.	9(7)	736-46	2011		
34792	21911595	Iwamoto M., Kiyota S., Hanada A., Yamaguchi S., Takano M.	The multiple contributions of phytochromes to the control of internode elongation in rice.	Plant Physiol.	157(3)	1187-95	2011		
34794	21978604	Ray M., Mishra P., Das P., Sabat S.C.	Expression and purification of soluble bio-active rice plant Catalase-A from recombinant Escherichia coli.	J. Biotechnol.	157(1)	12-9	2012		
34795	21847023	Yuka K., Kitano H., Yoshiaki I.	Molecular mechanism of crown root initiation and the different mechanisms between crown root and radicle in rice.	Plant Signal Behav	6(9)	1270-8	2011		
34803	22021418	Mathur S., Vyas S., Kapoor S., Tyagi A.K.	The Mediator Complex in Plants: Structure, Phylogeny, and Expression Profiling of Representative Genes in a Dicot (Arabidopsis) and a Monocot (Rice) during Reproduction and Abiotic Stress.	Plant Physiol.	157(4)	1609-27	2011		
34804	22078375	Cui M., Zhang W., Zhang Q., Xu Z., Zhu Z., Duan F., Wu R.	Induced over-expression of the transcription factor OsDREB2A improves drought tolerance in rice.	Plant Physiol. Biochem.	49(12)	1384-91	2011		
34805	21978282	Semsang N., Kawaree R., Cutler R.W., Chundet R., Yu L.D., Anuntalabhochai S.	Improved antioxidant activity of BKOS Thai jasmine rice.	Nat. Prod. Res.	26(12)	1145-51	2012		
34806	21996937	Bhattacharyya J., Chowdhury A.H., Ray S., Jha J.K., Das S., Gayen S., Chakraborty A., Mitra J., Maiti M.K., Basu A., Sen S.K.	Native polyubiquitin promoter of rice provides increased constitutive expression in stable transgenic rice plants.	Plant Cell Rep.	31(2)	271-9	2012	SLR1,_	slr1-1, slr1, slr, GAI, OsGAI, OsSLR1, Os SLR1, OsRGA1, OsGRAS-18, OsGRAS-18, GRAS-18, GRAS18, SLR-1,Ubi1
34810	21984727	Qi J., Zhou G., Yang L., Erb M., Lu Y., Sun X., Cheng J., Lou Y.	The Chloroplast-Localized Phospholipases D alpha4 and alpha5 Regulate Herbivore-Induced Direct and Indirect Defenses in Rice.	Plant Physiol.	157(4)	1987-99	2011	ACS2,PLDeta2,PLDalpha4,PLDalpha5,_,PLDalpha6,HPL3,PLDalpha2,PLDALPHA3,PLDalpha1,MSRMK2,DSG1	OsACS2, Os-ACS2,OsPLDeta2,OsPLDalpha4, RPLD3, OsPLDeta2, OsC2DP50, C2DP50,OsPLDalpha5, RPLD4, OsPLDeta3, OsC2DP51, C2DP51,Lox2:Os:1, OsLOX9, LOX9, OsLOX8, LOX8, OsLOX2, LOX2, OsRLL, OsHI-LOX, HI-LOX, RLL2 LOX, RLL2, Lox2osPil, OsLOX2;1, LOX2;1, OsLOX1, OsLOX7, LOX7,OsPLDalpha6, OsPLDeta1, OsPLDmu, OsC2DP31, C2DP31,OsHPL3, CYP74B2, OsCYP74B2,OsPLDalpha2, OsC2DP43, C2DP43,OsPLDalpha3, RPLD2, PLDalpha3, OsPLDeta1, PLD2, OsC2DP52, C2DP52,RPLD1, PLD1, OsPLDalpha1, OsC2DP2, C2DP2,OsMSRMK2, OsMAPK5, OsMAP1, OsMPK3, OsBIMK1, OsMAPK2, MPK5, BIMK1, MAPK2, MAPK5, MPK3, OsMPK5, OsMAPK3, OsMAPK5b, MAPK3,OsMAPK6, MAPK6, OsMPK6, OsSIPK, SIPK, OsMAPK1, MAPK1, MPK1, OsMPK1, MPK6, OsDSG1
34815	22086537	Ma B., Gao L., Zhang H., Cui J., Shen Z.	Aluminum-induced oxidative stress and changes in antioxidant defenses in the roots of rice varieties differing in Al tolerance.	Plant Cell Rep.	31(4)	687-96	2012		
34819	22092531	Endo M., Nakayama S., Umeda-Hara C., Ohtsuki N., Saika H., Umeda M., Toki S.	CDKB2 is involved in mitosis and DNA damage response in rice.	Plant J.	69(6)	967-77	2012		
34821	22065257	Chi W.C., Fu S.F., Huang T.L., Chen Y.A., Chen C.C., Huang H.J.	Identification of transcriptome profiles and signaling pathways for the allelochemical juglone in rice roots.	Plant Mol. Biol.	77(6)	591-607	2011		
34829	22113591	Shirasawa S., Endo T., Nakagomi K., Yamaguchi M., Nishio T.	Delimitation of a QTL region controlling cold tolerance at booting stage of a cultivar, 'Lijiangxintuanheigu', in rice, Oryza sativa L.	Theor. Appl. Genet.	124(5)	937-46	2012		
34832	21737747	Chen G., Komatsuda T., Ma J.F., Nawrath C., Pourkheirandish M., Tagiri A., Hu Y.G., Sameri M., Li X., Zhao X., Liu Y., Li C., Ma X., Wang A., Nair S., Wang N., Miyao A., Sakuma S., Yamaji N., Zheng X., Nevo E.	An ATP-binding cassette subfamily G full transporter is essential for the retention of leaf water in both wild barley and rice.	Proc. Natl. Acad. Sci. U.S.A.	108(30)	12354-9	2011	PDR6	OsPDR6, OsABCG31, OsABCG31_1
34834	21593600	Kagale S., Marimuthu T., Kagale J., Thayumanavan B., Samiyappan R.	Induction of systemic resistance in rice by leaf extracts of Zizyphus jujuba and Ipomoea carnea against Rhizoctonia solani.	Plant Signal Behav	6(7)	919-23	2011		
34836	21792744	Chauhan H., Khurana N., Agarwal P., Khurana P.	Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress.	Mol. Genet. Genomics	286(2)	171-87	2011	SPL7,HSFB4C,HSFA2E,HSFA1,HSFA5,HSFB2A,HSFB4A,HSFB4D,HSFB2B,HSFA4A,HSFB1,HSFA2B,HSFB4B,HSFC2B,HSFA2C,HSFA3,HSFB2C,HSFA7,HSFA6,HSFA9,HSFC1A,HSFC1B,HSFC2A,HSFA2D,HSFA2A	spl7, HSFA4D, HSF10, HSF15, OsHSF15, SP17, OsHsf-15, rHsf10, OsHsfA4d, HSfA4d, lrd13, HSF1,HSfB4c, OsHsfB4c, OsHsf-22, HSF22, OsHSF22,HSfA2e, OsHsfA2e, OsHsf-12, OsHSF12, HSF12, OsHsfA2a, HsfA2a,OsHsfA1, HsfA1, OsHSF13, HSF13, OsHsf-13, HSF3, rHsf3, OsHsfA1a,HSfA5, OsHsfA5, OsHsf-06, HSF06, OsHSF6, HSF6,HSfB2a, OsHsfB2a, OsHsf-14, rHsf1, HSF1, HSF14, OsHSF14,HSfB4a, OsHsfB4a, OsHsf-20, HSF20, OsHSF20,OsHsfB4d, HSfB4d, OsHsf-10, HSF10, OsHSF10,HSfB2b, OsHsfB2b, OsHsf-21, rHsf2, HSF2, HSF21, OsHSF21, OsHSF7,OsHsfA4a, OsHsf-04, HSFA4B, HSF04, OsHSF4, HSF4, HSF9, OsHsfA4b, OsHSF9,HSfB1, OsHsfB1, OsHsf-23, HSF23, OsHsf23, OsHSF23, TBF1 ,HSfA2b, OsHsfA2b, OsHsf-18, rHsf5, HS1, HSF18, OsHSF18, HSF5, OsHSF5,HSFB4b, OsHSFB4b, OsHsf-19, OsHSF19, rHsf12, OsHSF12, HSF12, HSF19,HSfC2b, OsHsfC2b, OsHsf-16, HSF16, OsHSF16,HSfA2c, OsHsfA2c, OsHsf-25, rHsf6, OsHSF6, HSF25, OsHSF25, HSF6, OsHsfA6a, HsfA6a ,HSfA3, OsHsfA3, OsHsf-07, HSF07, OsHSF7, HSF7, DLN57, OsDLN57,HSfB2c, OsHsfB2c, OsHsf-24, HSF24, OsHSF24 ,OsHsfA7, OsHsf-01, HSFA6B, HSF01, OsHSF1, HSF1, OsEnS-9, OsHsfA7a, HsfA7a ,HSfA6, OsHsfA6, OsHsf-17, HSF17, OsHSF17, HSFA6A, OsHsfA2f, HsfA2f, OsHsfA7b, HsfA7b,HSfA9, OsHsfA9, OsHsf-09, rHsf8, HSF09, OsHSF9, HSF9, HSF8, OsHsfA8, HsfA8 ,HSfC1a, OsHsfC1a, OsHsf-02, OsHSF2, HSF2, rHsf13, HSF02, HSF13,OsHsfC1b, HsfC1b, HSF03, OsHsf-03, OsHSF3, HSF3, HSF11,  rHsf11,HSfC2a, OsHsfC2a, OsHsf-05, HSF05, OsHSF5, HSF5,HSfA2d, OsHsfA2d, OsHsf-08, rHsf7, HSF08, OsHSF8, HSF8, HSF7, OsHSF7, OsHSFA2dI, OsHSFA2dII, OsHSFA2dIII, OsHsfA6b, HsfA6b, OsHsf2d, Hsf2d,HSfA2a, OsHsfA2a, OsHsf-11, rHsf4, OsHSF11, HSF11, HSF4, RHSP2, OsHsfA2a-1, OsHsfA2a-2, OsHsfA2a-3, OsHsfA2a-4, OsHsfA2a-5, OsHsfA2a-6, OsHsfA2e, HsfA2e 
34839	21726237	Liu Q., Yuan M., Zhou Y., Li X., Xiao J., Wang S.	A paralog of the MtN3/saliva family recessively confers race-specific resistance to Xanthomonas oryzae in rice.	Plant Cell Environ.	34(11)	1958-69	2011	SWEET13	OsSWEET13, Xa25(t), Xa25, OsMtN3, Xa25/SWEET13, OsSWEET13/XA25
34846	21300551	Hao Z., Wang L., He Y., Liang J., Tao R.	Expression of defense genes and activities of antioxidant enzymes in rice resistance to rice stripe virus and small brown planthopper.	Plant Physiol. Biochem.	49(7)	744-51	2011		
34849	21352959	Wani S.H., Sanghera G.S., Gosal S.S.	An efficient and reproducible method for regeneration of whole plants from mature seeds of a high yielding Indica rice (Oryza sativa L.) variety PAU 201.	N Biotechnol	28(4)	418-22	2011		
34853	21805338	Yan S., Zou G., Li S., Wang H., Liu H., Zhai G., Guo P., Song H., Yan C., Tao Y.	seed size is determined by the combinations of the genes controlling different seed characteristics in rice.	Theor. Appl. Genet.	123(7)	1173-81	2011		
34857	21800099	Sato K., Kawamura A., Obara T., Kawai S., Kajita S., Kitano H., Katayama Y.	Isolation of rice dwarf mutants with ectopic deposition of phenolic components including lignin in parenchyma cell walls of internodes.	Plant Cell Rep.	30(12)	2195-205	2011		
34858	21806801	Coudert Y., B?s M., Le T.V., Pr? M., Guiderdoni E., Gantet P.	Transcript profiling of crown rootless1 mutant stem base reveals new elements associated with crown root development in rice.	BMC Genomics	12	387	2011	IAA11,_,PRR95,_,_,_,_,SAUR9,HOX21,GTE4,_,TLP4,CRL1,SAUR12,MADS51,IAA24,IAA14,SERL5	OsIAA11,ZOS8-11,OsPRR95, Os-PRR95, Prr2, OsPRR2, OsCCT33,GIL1,MAP,BTBN18,  OsBTBN18, BTBN18,FSM, FAS1,OsSAUR9, SAUR50,Oshox21, OsHox21, OsHDZ10, OsHDZIP10, HDZ10, HDZIP10,OsGTE4, OsBrd4b, Brd4b,SAD2,OsTLP13, TLP13, OsTLP4,crl1, crl1*, ARL1, ARL1/CRL1, OsLBD3-2, LBD3-2, OsCRL1,OsSAUR12,OsMADS51, OsMADS65, MADS65, qHd1, DLN36, OsDLN36,OsIAA24,OsIAA14, AUX/IAA14, OsAUX/IAA14 ,OsSERL5, OsBAK1-4, OsSERK1, BAK1-4, SERK1
34862	21777252	Ptashnyk M., Roose T., Jones D.L., Kirk G.J.	Enhanced zinc uptake by rice through phytosiderophore secretion: a modelling study.	Plant Cell Environ.	34(12)	2038-46	2011		
34864	21788375	Takahashi H., Saika H., Matsumura H., Nagamura Y., Tsutsumi N., Nishizawa N.K., Nakazono M.	Cell division and cell elongation in the coleoptile of rice alcohol dehydrogenase 1-deficient mutant are reduced under complete submergence.	Ann. Bot.	108(2)	253-61	2011	CYCB2;2,_,EXPB17,_,EXPB11,CDKB2;1 ,CYCB2;1,EXPA1,ADH1	cycB2;2 (=cycOs2), cycB2;2, cycOs2, CycB2;2, CycOs2, CYCB2-2, CYCOS2, CycB2-Os2, CYCB2, CycB2;os;2, OsCycB2;2, Orysa;CycB2;2, OsCYCOS2, Os;cycB2;2, CYCB2.2, OsCYCB2.2,,OsEXPB17,,OsEXPB11, osaEXPb1.20,Orysa;CDKB2;1, OsCDKB2;1, cdc2Os3, Oscdc20s-3, cdc20s-3, Orysa;CDKB;2, CYCB2.1, CDKB-2, OsCDKB-2,cycB2;1 (=cycOs1), cycB2;1, cycOs1, CycB2;1, CycOs1, CYCB2-1, CYCOS1, CycB2-Os1, CYCB2, CycB2;os;1, Orysa;CycB2;1, CycB2;os;1, OsCycB2;1,OsEXP1, EXPA1, OsEXPA1, OsaEXPa1.16, RiExA,Adh1, Adh1/2, adh1/adh2, OsADH1
34865	21844309	Hancock C.N., Zhang F., Floyd K., Richardson A.O., Lafayette P., Tucker D., Wessler S.R., Parrott W.A.	The rice miniature inverted repeat transposable element mPing is an effective insertional mutagen in soybean.	Plant Physiol.	157(2)	552-62	2011		
34869	21778827	Yadav D.K., Tuteja N.	Rice G-protein coupled receptor (GPCR): in silico analysis and transcription regulation under abiotic stress.	Plant Signal Behav	6(8)	1079-86	2011	_	OsGPCR, GPCR
34872	21832284	Liu F., Chang X.J., Ye Y., Xie W.B., Wu P., Lian X.M.	Comprehensive sequence and whole-life-cycle expression profile analysis of the phosphate transporter gene family in rice.	Mol Plant	4(6)	1105-22	2011	PT1,PT8,PT2,PT19,PT3,PT22,PT9,PT12,PT14,PT21,PT4,PT5,PT6,PT13,PT10,PT18,PT11,PT24,PT16,PT15,PT20,PT23,PT25,PT7,PT26,PT17	OsPT1, PHT1-1, OsPht1;1, Pht1;1, OsPHT1;1, PHT1;1,OsPT8, PHT1-8, OsPht1;8, Pht1;8, PHT1;8, OsPHT1;8,OsPT2, PTH1-2, OsPht1;2, PHT1;2, OsPHT1;2,OsPT19,OsPT3, PHT1-3, OsPht1;3, OjPT1, PHT1;3,OsPT22, OsPHT4;3, PHT4;3,OsPT9, PHT1-9, OsPht1;9,OsPT12, PHT1-12, OsPht1;12,OsPT14, OsPHT2;1, PHT2;1,OsPT21,OsPT4, PHT1-4, OsPht1;4, PHT1-2, PHT1;4, OsPHT1;4,OsPT5, OsPht1;5, Pht1;5, PHT1-5,OsPT6, PHT1-6, OsPht1;6, OsLPT6:1, OsLPT1, OsPT6:1, Pht1;6, LPT6:1, LPT1, PT6:1,OsPT13, PHT1-13, OsPht1;13, ORYsa;PHT1;13,OsPT10, PHT1-10, OsPht1;10,OsPT18, OsMPT3;2, MPT3;2,OsPT11, PHT1-11, OsPht1;11, ORYsa;PHT1;11,OsPT24, OsPHT4;4, PHT4;4,OsPT16,OsPT15,OsSTA235, OsPT20,OsPT23,OsPT25,OsPT7, PHT1-7, OsPht1;7,OsPT26,OsPT17, OsMPT3;1, MPT3;1
34874	21856794	Fan C., Walling J.G., Zhang J., Hirsch C.D., Jiang J., Wing R.A.	Conservation and purifying selection of transcribed genes located in a rice centromere.	Plant Cell	23(8)	2821-30	2011	_,_,_,_,_,_,_,_,_,_,_,CBSX1,MRPL15,CENH3	Cen8.t00793,Cen8.t00849,Cen8.t01003, OsPABPC2, PABPC2,Cen8.t00802,Cen8.t00849,Cen8.t01009,OsWD40-159, Cen8.t00757, OseIF3i, eIF3i, EIF3I,  OsDWD53, DWD53,Cen8.t00808,Cen8.t00960,Cen8.t01152,Cen8.t01153,OsCBSX1, Cen8.t00941,Cen8.t00833, OsMRPL15,OsCENH3, CenH3
34875	21810995	Dreni L., Pilatone A., Yun D., Erreni S., Pajoro A., Caporali E., Zhang D., Kater M.M.	Functional analysis of all AGAMOUS subfamily members in rice reveals their roles in reproductive organ identity determination and meristem determinacy.	Plant Cell	23(8)	2850-63	2011	MADS21,MADS58,RAG,MADS13	OsMADS21, RMADS207,OsMADS58,MADS3, OsMADS3, OsMADS3(t), RMADS222, RAG1, rf3,OsMADS13, MAF1, RMADS206
34878	21880076	Kobayashi T., Itai R.N., Aung M.S., Senoura T., Nakanishi H., Nishizawa N.K.	The rice transcription factor IDEF1 directly binds to iron and other divalent metals for sensing cellular iron status.	Plant J.	69(1)	81-91	2012	ABI3	OsLFL2, LFL2, OsIDEF1, IDEF1, OsABI3
34880	21880933	Osugi A., Itoh H., Ikeda-Kawakatsu K., Takano M., Izawa T.	Molecular dissection of the roles of phytochrome in photoperiodic flowering in rice.	Plant Physiol.	157(3)	1128-37	2011	LHD3,EF1,PHYA,HD3A,GHD7,PHYB,RFT1	PHYC, OsPHYC, OsPHYCa, OsPHYCb, OsLHD3,Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,phyA, PHYA* (phyA), PHYA*, Phya, PHY18, phy 18, OsPHYA ,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,Ghd2, Ghd7, OsGhd7, OsCCT26, OsCMF8, OsI, Ghd7/Hd4, Hd4, EH7-1/Hd4, Ghd7-0a, EH7-1, EH7/Ghd7, EH7, OsEH7, GLW7.1, OsGLW7.1,phyB, PHYB1, OsPHYB, OsphyB, OsYHB, YHB, OsPHYB/OsYHB,FT-L 3, OsFTL3, FTL3, FT-L3, RFT, OsRFT1
34882	21914668	Lestari P., Lee G., Ham T.H., Reflinur, Woo M.O., Piao R., Jiang W., Chu S.H., Lee J., Koh H.J.	Single nucleotide polymorphisms and haplotype diversity in rice sucrose synthase 3.	J. Hered.	102(6)	735-46			
34883	21924254	Jin Y., Luo Q., Tong H., Wang A., Cheng Z., Tang J., Li D., Zhao X., Li X., Wan J., Jiao Y., Chu C., Zhu L.	An AT-hook gene is required for palea formation and floral organ number control in rice.	Dev. Biol.	359(2)	277-88	2011	DP1,REP1	dp1, pa, DP1/PAL1, PAL1, OsDP1, OsAHL11, AHL11,OsTCP24, REP1, TCP24, SDP1, SDP1/REP1, OsTb2, Tb2 
34884	21298364	Salunkhe A.S., Poornima R., Prince K.S., Kanagaraj P., Sheeba J.A., Amudha K., Suji K.K., Senthil A., Babu R.C.	Fine mapping QTL for drought resistance traits in rice (Oryza sativa L.) using bulk segregant analysis.	Mol. Biotechnol.	49(1)	90-5	2011		
34890	21951138	Ogawa S., Suzuki Y., Yoshizawa R., Kanno K., Makino A.	Effect of individual suppression of RBCS multigene family on Rubisco contents in rice leaves.	Plant Cell Environ.	35(3)	546-53	2012		
34892	22057998	Liu B., Li J.Q., Liu X.D., Shahid M.Q., Shi L.G., Lu Y.G.	Identification of neutral genes at pollen sterility loci Sd and Se of cultivated rice (Oryza sativa) with wild rice (O. rufipogon) origin.	Genet. Mol. Res.	10(4)	3435-45	2011		
34895	21973320	Song X., Li P., Zhai J., Zhou M., Ma L., Liu B., Jeong D.H., Nakano M., Cao S., Liu C., Chu C., Wang X.J., Green P.J., Meyers B.C., Cao X.	Roles of DCL4 and DCL3b in rice phased small RNA biogenesis.	Plant J.	69(3)	462-74	2012	DCL1,SHO1,DCL3B,DCL3A	Dcl1, OsDCL1, osDCL1, Os-DCL1, OsDCL1a, DCL1a,sho1, DCL4, OsDCL4, Os DCL4, Dcl4 ,OsDCL3b,OsDCL3a
34900	22038450	Jiang S.Y., Bhalla R., Ramamoorthy R., Luan H.F., Venkatesh P.N., Cai M., Ramachandran S.	Over-expression of OSRIP18 increases drought and salt tolerance in transgenic rice plants.	Transgenic Res.	21(4)	785-95	2012	RIP18	OSRIP18, RA39, OsRA39, OSjRIP7.2, RIP7.2
34901	21984008	Kim K.H., Alam I., Kim Y.G., Sharmin S.A., Lee K.W., Lee S.H., Lee B.H.	Overexpression of a chloroplast-localized small heat shock protein OsHSP26 confers enhanced tolerance against oxidative and heat stresses in tall fescue.	Biotechnol. Lett.	34(2)	371-7	2012		
34902	21988523	Ben Saad R., Fabre D., Mieulet D., Meynard D., Dingkuhn M., Al-Doss A., Guiderdoni E., Hassairi A.	Expression of the Aeluropus littoralis AlSAP gene in rice confers broad tolerance to abiotic stresses through maintenance of photosynthesis.	Plant Cell Environ.	35(3)	626-43	2012	DREB1A,HKT1,SODCC1,P5CS,APX1,PROT,SOS1,DREB1B	OsDREB1A, Os DREB1A, CBF3, OsCBF3, OsDREB1A/OsCBF3, ERF24, OsERF24, OsERF024, OsERF#024, AP2/EREBP#114, AP2/EREBP114, OsDREBL,OsHKT1, OsHKT2;1, HKT2;1, Ni (Nipponbare)-OsHKT1, Po (Pokkali)-HKT1, OsHKT1;1, HKT1;1,sodCc1, SODCC.1, sodA, RSODA, OsSOD1, OsCSD2, OsSodA, SodCc2, OsSODA1, SODCc1-Cu/Zn, OsCu/Zn-SOD2, Cu/Zn-SOD2, OsCSD1.2, CSD1.2, OsSODCc1-Cu/Zn, SODCc1-Cu/Zn, CuZnSOD1, Cu/ZnSOD1, OsCu/ZnSOD1, OsCSD4, CDS4, CuZnSOD4, OsCuZnSOD1, OsCSD1, CSD1, OsSOD2,OsP5CS, P5CS1, OsP5CS1, OsALDH18B1, ALDH18B1, OsP5CS-1, P5CS-1,OsAPX1, APXa, OsAPXa, OsAPx01, OsAPx1, OSAPX1, APx1, cAPX, APX2, cAPXa, OscAPXa,OsProT, ProT, OsProT2, ProT2,OsSOS1, OsNHA1, NHA1, SOS1/NHX7, NHX7, OsNHX7,OsDREB1B, ERF31, OsERF031, OsERF#031, OsERF31, AP2/EREBP#169, AP2/EREBP169, OsDREB1b, OsDREB1C, OsCBF1, CBF1
34903	21921696	Bashir K., Ishimaru Y., Nishizawa N.K.	Identification and characterization of the major mitochondrial Fe transporter in rice.	Plant Signal Behav	6(10)	1591-3	2011		
34907	22099517	Tsuda H.	Generation of poly-beta-hydroxybutyrate from externally provided acetate in rice root.	Plant Physiol. Biochem.	50(1)	35-43	2012		
34909	21232645	Liu Y.T., Luo Z.Y., Long C.N., Wang H.D., Long M.N., Hu Z.	Cellulase production in a new mutant strain of Penicillium decumbens ML-017 by solid state fermentation with rice bran.	N Biotechnol	28(6)	733-7	2011		
34910	22024734	Sultana S., Khew C.Y., Morshed M.M., Namasivayam P., Napis S., Ho C.L.	Overexpression of monodehydroascorbate reductase from a mangrove plant (AeMDHAR) confers salt tolerance on rice.	J. Plant Physiol.	169(3)	311-8	2012		
34911	22111585	Yi J., Kim S.R., Lee D.Y., Moon S., Lee Y.S., Jung K.H., Hwang I., An G.	The rice gene, DEFECTIVE TAPETUM AND MEIOCYTES 1 (DTM1), is required for early tapetum development and meiosis.	Plant J.	70(2)	256-70	2012	MEL1,UDT1,G1,MSP1,OSC4,C6,DTM1,PAIR1,PSS1,CP1	mel1, OsMEL1, MEAL1, OsMEAL1, OsAGO5c ,Udt1, bHLH164, OsUDT1, OsbHLH164 ,Osg1, g1,Msp1, OsMSP1, OsTMS15, TMS15,Osc4, OsC4, Osg4B, OsLTPc1, OsLtpIII.1, C4,Osc6, Osg6B, OsG6B, OsLTPG25, OsLTPg25, OsLtpVII.1, Os C6,OsDTM1,Pair1, OsPAIR1,pss1, OsPSS1,OsCP1, Os CP1
34912	22080374	Jiang W., Jin Y.M., Lee J., Lee K.I., Piao R., Han L., Shin J.C., Jin R.D., Cao T., Pan H.Y., Du X., Koh H.J.	Quantitative trait loci for cold tolerance of rice recombinant inbred lines in low temperature environments.	Mol. Cells	32(6)	579-87	2011		
34913	22080597	Wu Y., Kikuchi S., Yan H., Zhang W., Rosenbaum H., Iniguez A.L., Jiang J.	Euchromatic Subdomains in Rice Centromeres Are Associated with Genes and Transcription.	Plant Cell	23(11)	4054-64	2011	CENH3	OsCENH3, CenH3
34915	21132530	Cao Y., Lou Y., Han Y., Shi J., Wang Y., Wang W., Ming F.	Al toxicity leads to enhanced cell division and changed photosynthesis in Oryza rufipogon L.	Mol. Biol. Rep.	38(8)	4839-46	2011		
34916	22105913	Marzougui S., Sugimoto K., Yamanouchi U., Shimono M., Hoshino T., Hori K., Kobayashi M., Ishiyama K., Yano M.	Mapping and characterization of seed dormancy QTLs using chromosome segment substitution lines in rice.	Theor. Appl. Genet.	124(5)	893-902	2012		
34918	22048639	Myint K.K., Fujita D., Matsumura M., Sonoda T., Yoshimura A., Yasui H.	Mapping and pyramiding of two major genes for resistance to the brown planthopper (Nilaparvata lugens [St?l]) in the rice cultivar ADR52.	Theor. Appl. Genet.	124(3)	495-504	2012		
34921	22134723	Han S.H., Sakuraba Y., Koh H.J., Paek N.C.	Leaf variegation in the rice zebra2 mutant is caused by photoperiodic accumulation of tetra-cis-lycopene and singlet oxygen.	Mol. Cells	33(1)	87-97	2012		
34922	22110044	Zhang W., Wu Y., Schnable J.C., Zeng Z., Freeling M., Crawford G.E., Jiang J.	High-resolution mapping of open chromatin in the rice genome.	Genome Res.	22(1)	151-62	2012		
34928	22118877	Wakabayashi K., Soga K., Hoson T.	Phenylalanine ammonia-lyase and cell wall peroxidase are cooperatively involved in the extensive formation of ferulate network in cell walls of developing rice shoots.	J. Plant Physiol.	169(3)	262-7	2012	PAL1,POX5.1,POX3006,POXGX9,POX8.1,POX22.3	OsPAL, Pal1*, Pal1, PAL, Pal_1, PalI, PAL2, OsPAL01, PAL01, OSPAL, CP-1, GP-1, OsPAL1, PAL3, OsPAL3,POX5.1, prx113, POX5,POX3006, prx114, Osprx114, PO-C1, POC-1, POC1, OsPOC1, Prx14, OsPrx14, POD3006, OsPOD3006,POXgX9, OsPOXgX9, prx112, OsPrx112,POX8.1, prx110, POX8,POX22.3, OSPER, OsPOX, POX, Pir3, prx111, POX22, OsPOX1, POX1, OsPOX22.3, OsPR9, PR9
34930	21765177	Gao L.L., Xue H.W.	Global Analysis of Expression Profiles of Rice Receptor-Like Kinase Genes.	Mol Plant	5(1)	143-53	2012		
34931	21779386	Ghaffar M.B., Pritchard J., Ford-Lloyd B.	Brown planthopper (N. lugens Stal) feeding behaviour on rice germplasm as an indicator of resistance.	PLoS ONE	6(7)	e22137	2011		
34932	21760901	Ito S., Umehara M., Hanada A., Kitahata N., Hayase H., Yamaguchi S., Asami T.	Effects of triazole derivatives on strigolactone levels and growth retardation in rice.	PLoS ONE	6(7)	e21723	2011		
34933	21744228	Fujino K., Iwata N.	Selection for low-temperature germinability on the short arm of chromosome 3 in rice cultivars adapted to Hokkaido, Japan.	Theor. Appl. Genet.	123(7)	1089-97	2011		
34934	21792631	Zhang H., Zhang C.Q., Sun Z.Z., Yu W., Gu M.H., Liu Q.Q., Li Y.S.	A major locus qS12, located in a duplicated segment of chromosome 12, causes spikelet sterility in an indica-japonica rice hybrid.	Theor. Appl. Genet.	123(7)	1247-56	2011		
34935	21789706	Shibaya T., Nonoue Y., Ono N., Yamanouchi U., Hori K., Yano M.	Genetic interactions involved in the inhibition of heading by heading date QTL, Hd2 in rice under long-day conditions.	Theor. Appl. Genet.	123(7)	1133-43	2011	SE1,HD5,GHD7,HD16,HD2	Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, OsHd1,  Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,Hd5(t)*, Hd5, qHD5, HAP3H, OsHAP3H, NF-YB, CBF-A, DTH8 , qHD5(t)*, Ghd8, Ghd8/DTH8, Lhd1, NF-YB11, OsNF-YB11, NFYB11, LH8, DTH8/Ghd8, RH8, DTH8/Ghd8/LHD1, CAR8, DTH8/Ghd8/ OsHAP3H, EF8, OsEF8,Ghd2, Ghd7, OsGhd7, OsCCT26, OsCMF8, OsI, Ghd7/Hd4, Hd4, EH7-1/Hd4, Ghd7-0a, EH7-1, EH7/Ghd7, EH7, OsEH7, GLW7.1, OsGLW7.1,Hd16, EL1, CK1, Hd16/CKI, Hd16/EL1,Hd2(t), Hd2, qHD2(t), OsPRR37, Os-PRR37, PRR37, Prr4, OsPRR4, DTH7, Os DTH7, OsCCT28, CCT28, Ghd7.1, PRR37/Hd2, EH7-2, EH7-2/Hd2, Hd2/PRR37, PRR37-1a, PRR37-1b, PRR37-1c, PRR37-2a, PRR37- 2, HD7.2
34937	21966570	Lira-Ruan V., Ruiz-Kubli M., Arredondo-Peter R.	Expression of non-symbiotic hemoglobin 1 and 2 genes in rice (Oryza sativa) embryonic organs.	Commun Integr Biol	4(4)	457-8	2011	Hb5,Hb4,Hb3,Hb1,Hb2	OsHB5, HB5, OsPgb1.5, Pgb1.5,OsHB4, HB4, OsNSHB4, NSHB4, OsPgb1.4, Pgb1.4,HB3, OsNSHB3, NSHB3, OsPgb1.3, Pgb1.3,HB1, OsHB1, GLB1A, rHb1, ORYsa GLB1a, nsHb1, OsNSHB1, hb1, nsHb, OsPgb1.1, Pgb1.1,HB2, OsHB2, OsNSHB2, hb2, GLB1b, ORYsa GLB1b, OsPgb1.2, Pgb1.2
34939	21668602	Kudahettige N.P., Pucciariello C., Parlanti S., Alpi A., Perata P.	Regulatory interplay of the Sub1A and CIPK15 pathways in the regulation of alpha-amylase production in flooded rice plants.	Plant Biol (Stuttg)	13(4)	611-9	2011		
34941	21784949	Li H., Liang W., Hu Y., Zhu L., Yin C., Xu J., Dreni L., Kater M.M., Zhang D.	Rice MADS6 interacts with the floral homeotic genes SUPERWOMAN1, MADS3, MADS58, MADS13, and DROOPING LEAF in specifying floral organ identities and meristem fate.	Plant Cell	23(7)	2536-52	2011	MFO1,SPW1,RAG,MADS24,MADS13,DL,MADS58,MADS7	OsMADS6, MADS6, OsMFO1,SPW1, spw1, MADS16, OsMADS16,MADS3, OsMADS3, OsMADS3(t), RMADS222, RAG1, rf3,OsMADS24, MADS8, OsMADS8, OsMADS8/24 ,OsMADS13, MAF1, RMADS206,OsDL, dl(lop), lop, dl, dl1, OsDRPq3, DRPq3,OsMADS58,OsMADS7, OsMADS45, FDRMADS1, RMADS216, AGL6, M79, MADS45, Os MADS7, Os MADS45, OsMADS7/45
34942	21793697	Wang B., Jiang L., Zhang Y., Zhang W., Wang Q., Liu S., Liu Y., Cheng X., Zhai H., Wan J.	Genetic dissection of the resistance to Rice stripe virus present in the indica rice cultivar 'IR24'.	Genome	54(8)	611-9	2011	STVB	Stvb(St2), St2, Stvb, Stv2
34943	21792227	Koide Y., Shinya Y., Ikenaga M., Sawamura N., Matsubara K., Onishi K., Kanazawa A., Sano Y.	Complex genetic nature of sex-independent transmission ratio distortion in Asian rice species: the involvement of unlinked modifiers and sex-specific mechanisms.	Heredity	108(3)	242-7	2012	S6	
34944	21730357	Fujita N., Satoh R., Hayashi A., Kodama M., Itoh R., Aihara S., Nakamura Y.	Starch biosynthesis in rice endosperm requires the presence of either Starch synthase I or IIIa.	J. Exp. Bot.	62(14)	4819-31	2011	FLO5,SSI	OsSSIIIa, SSIII-2, OsSSIII-2, OsSS3A, SS3A, SS3a, OsSSSIIIa, SSIIIa, Flo5,OsSSI, SSS 1, SSS1, SS1, OsSS1, SSSI, OsSSSI
34951	21930100	Zhang B., Tian F., Tan L., Xie D., Sun C.	Characterization of a novel high-tillering dwarf 3 mutant in rice.	J Genet Genomics	38(9)	411-8	2011		
34952	21960163	Shen Y., Zhang Y., Yang C., Lan Y., Liu L., Liu S., Chen Z., Ren G., Wan J.	Mutation of OsALDH7 causes a yellow-colored endosperm associated with accumulation of oryzamutaic acid A in rice.	Planta	235(2)	433-41	2012		
34953	21937483	Kumagai E., Araki T., Hamaoka N., Ueno O.	Ammonia emission from rice leaves in relation to photorespiration and genotypic differences in glutamine synthetase activity.	Ann. Bot.	108(7)	1381-6	2011		
34960	21852757	Feng H., Fan X., Yan M., Liu X., Miller A.J., Xu G.	Multiple roles of nitrate transport accessory protein NAR2 in plants.	Plant Signal Behav	6(9)	1286-9	2011	NRT2.2,NRT2.4,HTNE,NAR2.2,NRT2.1,NAR2.1	OsNRT2.2, OsNRT2.1,OsNRT2.4,NRT2.3, OsNRT2.3, OsNRT2;1, OsNRT2.3a, OsNRT2.3b, OsNRT2;3a, OsNRT2.5 ,OsNAR2.2, OsNRT3.1B,OsNRT2.1, OsNRT2.2,OsNAR2.1, OsNRT3.1A
34961	21971746	Khurana N., Chauhan H., Khurana P.	Expression analysis of a heat-inducible, Myo-inositol-1-phosphate synthase (MIPS) gene from wheat and the alternatively spliced variants of rice and Arabidopsis.	Plant Cell Rep.	31(1)	237-51	2012		
34962	22043312	Lee S., Jia Y., Jia M., Gealy D.R., Olsen K.M., Caicedo A.L.	Molecular evolution of the rice blast resistance gene Pi-ta in invasive weedy rice in the USA.	PLoS ONE	6(10)	e26260	2011	PITA	Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30, Trx30
34965	22078377	Pons R., Cornejo M.J., Sanz A.	Differential salinity-induced variations in the activity of H?-pumps and Na?/H? antiporters that are involved in cytoplasm ion homeostasis as a function of genotype and tolerance level in rice cell lines.	Plant Physiol. Biochem.	49(12)	1399-409	2011		
34969	22038433	Qiu Y., Guo J., Jing S., Zhu L., He G.	Development and characterization of japonica rice lines carrying the brown planthopper-resistance genes BPH12 and BPH6.	Theor. Appl. Genet.	124(3)	485-94	2012	BPH6,BPH12	Bph6, OsBPH6,bph12
34970	21984651	Han X., Wang Y., Liu X., Jiang L., Ren Y., Liu F., Peng C., Li J., Jin X., Wu F., Wang J., Guo X., Zhang X., Cheng Z., Wan J.	The failure to express a protein disulphide isomerase-like protein results in a floury endosperm and an endoplasmic reticulum stress response in rice.	J. Exp. Bot.	63(1)	121-30	2012		
34971	21338466	Jacobs A., Ford K., Kretschmer J., Tester M.	Rice plants expressing the moss sodium pumping ATPase PpENA1 maintain greater biomass production under salt stress.	Plant Biotechnol. J.	9(8)	838-47	2011		
34972	22020279	Gibbs D.J., Lee S.C., Isa N.M., Gramuglia S., Fukao T., Bassel G.W., Correia C.S., Corbineau F., Theodoulou F.L., Bailey-Serres J., Holdsworth M.J.	Homeostatic response to hypoxia is regulated by the N-end rule pathway in plants.	Nature	479(7373)	415-8	2011	SUB1C,SUB1A	Sub1C, OsSUB1C, OsERF#073, OsERF073, ERF073, OsERF73, ERF73, AP2/EREBP#122, AP2/EREBP122, SUB1B,Sub1A, Sub1A-1, Sub1A-2, OsSUB1A
34974	22131052	Zhang C.C., Yuan W.Y., Zhang Q.F.	RPL1, a Gene Involved in Epigenetic Processes Regulates Phenotypic Plasticity in Rice.	Mol Plant	5(2)	482-93	2012	D61,SLR1,RR5,GA2OX1,CPS1,RR6,GNP1,RPL1,GID1	d61*, dwf42, d61, OsBRI1, OSBRI1, BRI1, Os BRI1, Osbri1, OsBRKq1, BRKq1,slr1-1, slr1, slr, GAI, OsGAI, OsSLR1, Os SLR1, OsRGA1, OsGRAS-18, OsGRAS-18, GRAS-18, GRAS18, SLR-1,rr5, OsRR5, Rra4, OsRRA4,OsGA2ox1, ga2ox-1, OsGA2ox-1, ga2ox, ga2ox 1, GA2ox1,OsCPS1, OsCPS1ent, OsCPS, Os CPS1, OsTPS4, TPS4, TPS29, OsTPS29, OsCPS1-L, OsCPS1-S,OsRR6, rr6, Rra6, OsRRA6,GA20OX1, OsGA20ox1, 20ox1, GA20ox-1, ga20ox1, Os20ox, C20OX2, OsGA20ox2, OsGA20ox-1, GA20ox1, OsGNP1,,gid1, OsGID1, Thl, Os GID1
34975	22174619	Yang L., Chen J., Xu T., Qiu W., Zhang Y., Zhang L., Xu F., Liu H.	Rice protein extracted by different methods affects cholesterol metabolism in rats due to its lower digestibility.	Int J Mol Sci	12(11)	7594-608	2011		
34978	22017194	Barding G.A., Fukao T., B?ni S., Bailey-Serres J., Larive C.K.	Differential Metabolic Regulation Governed by the Rice SUB1A Gene during Submergence Stress and Identification of Alanylglycine by (1)H NMR Spectroscopy.	J. Proteome Res.	11(1)	320-30	2012		
34980	21739353	Takakura Y., Oka N., Suzuki J., Tsukamoto H., Ishida Y.	Intercellular Production of Tamavidin 1, a biotin-binding protein from Tamogitake Mushroom, Confers Resistance to the Blast Fungus Magnaporthe oryzae in Transgenic Rice.	Mol. Biotechnol.	51(1)	9-17	2012		
34983	21600393	Luo X., Wu S., Tian F., Xin X., Zha X., Dong X., Fu Y., Wang X., Yang J., Sun C.	Identification of heterotic loci associated with yield-related traits in Chinese common wild rice (Oryza rufipogon Griff.).	Plant Sci.	181(1)	14-22	2011		
34987	21931853	Yang D., Fan T., Zhou H., Ding J., Zhang D.	Biogenic hierarchical TiO?/SiO? derived from rice husk and enhanced photocatalytic properties for dye degradation.	PLoS ONE	6(9)	e24788	2011		
34990	21921697	Ishimaru Y., Bashir K., Nakanishi H., Nishizawa N.K.	The role of rice phenolics efflux transporter in solubilizing apoplasmic iron.	Plant Signal Behav	6(10)	1624-6	2011		
34992	21829379	Li C., Wang Y., Liu L., Hu Y., Zhang F., Mergen S., Wang G., Schl?ppi MR., Chu C.	A rice plastidial nucleotide sugar epimerase is involved in galactolipid biosynthesis and improves photosynthetic efficiency.	PLoS Genet.	7(7)	e1002196	2011	WX1,_,_,UGE3,UGE4,FC24,PHD1,UGE1,UGP1,_,_,_,GPT1,SSI,INV1,SMS2,GPT2,RSUS1,SBE1,AGPL2	wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx,GalK2,GalM4,OsUGE3, OsUGE4,OsUGE4, OsUGE3,OsUGE2, UGE2, OsFC24, BZ1, OsBZ1, OsBP1, BP1,OsPHD1,  LM212-1,OsUGE1, OsUGE-1, UGE-1,Ugp1, OsUgp1, UGP2, UGP3,,GalT,BTI-1,OsGPT1, OsGPT2, GPT2,OsSSI, SSS 1, SSS1, SS1, OsSS1, SSSI, OsSSSI,OSINV1, OsINV1, OsCIN7, OsCIN8,INV3, OSINV3, OsINV3, OsVIN2, VIN2, VINV, OsSMS2,OsGPT2,sus1, RSus1(t), SUS1, SS2, OsScS2, RSs2, RSus1, SuSy1, OsSUS1, RSS2, RSus2, OsRSUS1,sbe1, Rbe1. Sbe1, sbe1*(QEI), RBE1, BEI, SBE I, QEI, OsBEI, BE1, OsSBE1, OsSBEI, SBEI,OsAGPL2, osagpl2, APL2, OsAPL2, AGPiso, sh2, Sh2, GIF2, GAS1 
34995	21769472	Gan Q., Li D., Liu G., Zhu L.	Identification of Potential Antisense Transcripts in Rice Using Conventional Microarray.	Mol. Biotechnol.	51(1)	37-43	2012		
35002	21605341	Huang Q.N., Shi Y.F., Yang Y., Feng B.H., Wei Y.L., Chen J., Baraoidan M., Leung H., Wu J.L.	Characterization and genetic analysis of a light- and temperature-sensitive spotted-leaf mutant in rice.	J Integr Plant Biol	53(8)	671-81	2011	SPL30	spl30(t)
35009	21811828	Xu M., Li L., Fan Y., Wan J., Wang L.	ZmCBF3 overexpression improves tolerance to abiotic stress in transgenic rice (Oryza sativa) without yield penalty.	Plant Cell Rep.	30(10)	1949-57	2011		
35015	21879323	Hwang S.G., Kim D.S., Jang C.S.	Comparative analysis of evolutionary dynamics of genes encoding leucine-rich repeat receptor-like kinase between rice and Arabidopsis.	Genetica	139(8)	1023-32	2011		
35018	21824678	Saito M., Yoshida M.	Expression analysis of the gene family associated with raffinose accumulation in rice seedlings under cold stress.	J. Plant Physiol.	168(18)	2268-71	2011		
35019	21790181	Huff G.S., Doncheva I.S., Brinkley D.W., Angeles-Boza AM., Mukherjee A., Cramer C.J., Roth J.P.	Experimental and computational investigations of oxygen reactivity in a heme and tyrosyl radical-containing fatty acid alpha-(di)oxygenase.	Biochemistry	50(34)	7375-89	2011	PIOX	OsPIOX, RalphaO, alpha-DOX, OsDOX, DOX, alpha-DOX2, Osalpha-DOX2
35022	21829395	Famoso A.N., Zhao K., Clark R.T., Tung C.W., Wright M.H., Bustamante C., Kochian L.V., McCouch S.R.	Genetic architecture of aluminum tolerance in rice (Oryza sativa) determined through genome-wide association analysis and QTL mapping.	PLoS Genet.	7(8)	e1002221	2011	NRAMP4,STAR2,ZOS12-02	OsNRAMP4, Nrat1, Nramp6, OsNRAT1, NRAT1, FCO5,OsSTAR2, OsSATR2,OsART1, STAR3, OsZOS12-02, ART1
35023	21801300	Shin Y.J., Chong Y.J., Yang M.S., Kwon T.H.	Production of recombinant human granulocyte macrophage-colony stimulating factor in rice cell suspension culture with a human-like N-glycan structure.	Plant Biotechnol. J.	9(9)	1109-19	2011		
35024	22133686	Li J., Wang D., Xie Y., Zhang H., Hu G., Li J., Dai A., Liu L., Li Z.	Development of upland rice introgression lines and identification of QTLs for basal root thickness under different water regimes.	J Genet Genomics	38(11)	547-56	2011		
35025	21884550	Park S., Lee K., Kim Y.S., Back K.	Tryptamine 5-hydroxylase-deficient Sekiguchi rice induces synthesis of 5-hydroxytryptophan and N-acetyltryptamine but decreases melatonin biosynthesis during senescence process of detached leaves.	J. Pineal Res.	52(2)	211-6	2012		
35027	21901484	Peng H., Feng Y., Zhu X., Lan X., Tang M., Wang J., Dong H., Chen B.	MoDUO1, a Duo1-like gene, is required for full virulence of the rice blast fungus Magnaporthe oryzae.	Curr. Genet.	57(6)	409-20	2011		
35030	21954158	Wang G., Sun X., Wang G., Wang F., Gao Q., Sun X., Tang Y., Chang C., Lai J., Zhu L., Xu Z., Song R.	Opaque7 encodes an acyl-activating enzyme-like protein that affects storage protein synthesis in maize endosperm.	Genetics	189(4)	1281-95	2011	_	OsAAE3, AAE3, OsOCS, OCS, 4CL
35035	21284800	Peleg Z., Reguera M., Tumimbang E., Walia H., Blumwald E.	Cytokinin-mediated source/sink modifications improve drought tolerance and increase grain yield in rice under water-stress.	Plant Biotechnol. J.	9(7)	747-58	2011		
35051	21984925	Malone B.M., Tan F., Bridges S.M., Peng Z.	Comparison of four ChIP-Seq analytical algorithms using rice endosperm H3K27 trimethylation profiling data.	PLoS ONE	6(9)	e25260	2011		
35056	21274659	Akbudak M.A., Srivastava V.	Improved FLP recombinase, FLPe, efficiently removes marker gene from transgene locus developed by Cre-lox mediated site-specific gene integration in rice.	Mol. Biotechnol.	49(1)	82-9	2011		
35059	21848656	Yamori W., Sakata N., Suzuki Y., Shikanai T., Makino A.	Cyclic electron flow around photosystem I via chloroplast NAD(P)H dehydrogenase (NDH) complex performs a significant physiological role during photosynthesis and plant growth at low temperature in rice.	Plant J.	68(6)	966-76	2011	CRR6	OsCRR6
35060	22039121	Wakasa Y., Hirano K., Urisu A., Matsuda T., Takaiwa F.	Generation of transgenic rice lines with reduced contents of multiple potential allergens using a null mutant in combination with an RNA silencing method.	Plant Cell Physiol.	52(12)	2190-9	2011		
35065	22016430	Campo S., Peris-Peris C., Montesinos L., Pe?as G., Messeguer J., San Segundo B.	Expression of the maize ZmGF14-6 gene in rice confers tolerance to drought stress while enhancing susceptibility to pathogen infection.	J. Exp. Bot.	63(2)	983-99	2012		
35071	22089543	Keong B.P., Harikrishna J.A.	Genome Characterization of a Breeding Line Derived from a Cross Between Oryza sativa and Oryza rufipogon.	Biochem. Genet.	50(1-2)	135-45	2012		
35073	22107880	Duan G., Kamiya T., Ishikawa S., Arao T., Fujiwara T.	Expressing ScACR3 in Rice Enhanced Arsenite Efflux and Reduced Arsenic Accumulation in rice grains.	Plant Cell Physiol.	53(1)	154-63	2012		
35074	21951842	Wen B.Q., Xing M.Q., Zhang H., Dai C., Xue H.W.	Rice homeobox transcription factor HOX1a positively regulates gibberellin responses by directly suppressing EL1.	J Integr Plant Biol	53(11)	869-78	2011		
35075	22084198	Dash S., Van Hemert J., Hong L., Wise R.P., Dickerson J.A.	PLEXdb: gene expression resources for plants and plant pathogens.	Nucleic Acids Res.	40(Database issue)	D1194-201	2012		
35082	22076247	Kwon J.Y., Lee K.H., Cheon S.H., Ryu H.N., Kim S.J., Kim D.I.	Adsorptive loss of secreted recombinant proteins in transgenic rice cell suspension cultures.	Plant Cell Rep.	31(3)	551-60	2012		
35089	22055918	Suzuki K., Yang L., Takaiwa F.	Transgenic rice accumulating modified cedar pollen allergen Cry j 2 derivatives.	J. Biosci. Bioeng.	113(2)	249-51	2012		
35091	22108719	Shigemitsu T., Ozaki S., Saito Y., Kuroda M., Morita S., Satoh S., Masumura T.	Production of human growth hormone in transgenic rice seeds: co-introduction of RNA interference cassette for suppressing the gene expression of endogenous storage proteins.	Plant Cell Rep.	31(3)	539-49	2012		
35092	22000797	Jo Y., Hyun T.K.	Genome-wide identification of antioxidant component biosynthetic enzymes: comprehensive analysis of ascorbic acid and tocochromanols biosynthetic genes in rice.	Comput Biol Chem	35(5)	261-8	2011		
35094	21922808	Zhang Q.W., Du C.X., Li X.W., Li G.C., Wang M.	[Nitrogen uptake rate and use efficiency by rice under different levels of the controlled-release N fertilizers (CRF) in the Nansi Lake basin].	Huan Jing Ke Xue	32(7)	1908-15	2011		
35097	21751161	Ashkani S., Rafii M.Y., Sariah M., Siti Nor Akmar A., Rusli I., Abdul Rahim H., Latif M.A.	Analysis of simple sequence repeat markers linked with blast disease resistance genes in a segregating population of rice (Oryza sativa).	Genet. Mol. Res.	10(3)	1345-55	2011		
35099	21791436	Butardo V.M., Fitzgerald M.A., Bird A.R., Gidley M.J., Flanagan B.M., Larroque O., Resurreccion A.P., Laidlaw H.K., Jobling S.A., Morell M.K., Rahman S.	Impact of down-regulation of starch branching enzyme IIb in rice by artificial microRNA- and hairpin RNA-mediated RNA silencing.	J. Exp. Bot.	62(14)	4927-41	2011	SBE3	SBEIII*, SBEIII, Sbe3, RBE3, QEIIa, QEIIA, BEIIb, BEIIB, SBEIIb, OsBEIIb, sbe3, SBE III, OsSBEIIb, SBEIIb
35101	21803813	Suzuki K., Ohmori Y., Ratel E.	High root temperature blocks both linear and cyclic electron transport in the dark during chilling of the leaves of rice seedlings.	Plant Cell Physiol.	52(9)	1697-707	2011		
35104	21726058	Xie J.K., Kong X.L., Chen J., Hu B.L., Wen P., Zhuang J.Y., Bao J.S.	Mapping of quantitative trait loci for fiber and lignin contents from an interspecific cross Oryza sativa~Oryza rufipogon.	J Zhejiang Univ Sci B	12(7)	518-26	2011		
35106	21835275	Chernov V.M., Chernova O.A., Medvedeva E.S., Mouzykantov A.A., Ponomareva A.A., Shaymardanova G.F., Gorshkov O.V., Trushin M.V.	Unadapted and adapted to starvation Acholeplasma laidlawii cells induce different responses of Oryza sativa, as determined by proteome analysis.	J Proteomics	74(12)	2920-36	2011		
35112	21850595	Suzuki G., Wada H., Goto H., Nakano A., Oba H., Deno T., Rahman S., Mukai Y.	Transgenic rice plants harboring the grain hardness-locus region of Aegilops tauschii.	Plant Cell Rep.	30(12)	2293-301	2011		
35114	21859960	Zhang Y.M., Yan Y.S., Wang L.N., Yang K., Xiao N., Liu Y.F., Fu Y.P., Sun Z.X., Fang R.X., Chen X.Y.	A Novel Rice Gene, NRR Responds to Macronutrient Deficiency and Regulates Root Growth.	Mol Plant	5(1)	63-72	2012	NRR	OsNRR, NRRa, NRRb, OsCCT18, OsCMF6,  CCT18, CMF6, CRCT, OsCRCT
35115	21807692	Kato Y., Okami M.	Root morphology, hydraulic conductivity and plant water relations of high-yielding rice grown under aerobic conditions.	Ann. Bot.	108(3)	575-83	2011		
35118	21883233	Jamil M., Rodenburg J., Charnikhova T., Bouwmeester H.J.	Pre-attachment Striga hermonthica resistance of New Rice for Africa (NERICA) cultivars based on low strigolactone production.	New Phytol.	192(4)	964-75	2011		
35126	21894467	Uga Y., Hanzawa E., Nagai S., Sasaki K., Yano M., Sato T.	Identification of qSOR1, a major rice QTL involved in soil-surface rooting in paddy fields.	Theor. Appl. Genet.	124(1)	75-86	2012		
35133	21848845	Yang X.Y., Yang J.L., Zhou Y., Pi?eros MA., Kochian L.V., Li G.X., Zheng S.J.	A de novo synthesis citrate transporter, Vigna umbellata multidrug and toxic compound extrusion, implicates in Al-activated citrate efflux in rice bean (Vigna umbellata) root apex.	Plant Cell Environ.	34(12)	2138-48	2011		
35142	22028913	Li S., Xiong R., Wang X., Zhou Y.	Five proteins of Laodelphax striatellus are potentially involved in the interactions between rice stripe virus and vector.	PLoS ONE	6(10)	e26585	2011		
35144	22072914	Hsuan H.M., Salleh B., Zakaria L.	Molecular Identification of Fusarium Species in Gibberella fujikuroi Species Complex from Rice, Sugarcane and Maize from Peninsular Malaysia.	Int J Mol Sci	12(10)	6722-32	2011		
35145	22153234	Kiyota S., Xie X., Takano M.	phytochromes A and C cooperatively regulate early and transient gene expression after red-light irradiation in rice seedlings.	Plant Physiol. Biochem.	51	10-7	2012		
35147	22021420	Phung T.H., Jung H.I., Park J.H., Kim J.G., Back K., Jung S.	Porphyrin Biosynthesis Control under Water Stress: Sustained Porphyrin Status Correlates with drought tolerance in Transgenic Rice.	Plant Physiol.	157(4)	1746-64	2011		
35150	21985968	Wu Y., Hillwig M.L., Wang Q., Peters R.J.	Parsing a multifunctional biosynthetic gene cluster from rice: Biochemical characterization of CYP71Z6 & 7.	FEBS Lett.	585(21)	3446-51	2011	CYP71Z6,CYP71Z7	Oscyp71Z6, OsCYP71Z5, CYP71Z5,Oscyp71Z7, OsCYP71Z6, CYP71Z6
35153	21980143	Jiao B.B., Wang J.J., Zhu X.D., Zeng L.J., Li Q., He Z.H.	A Novel Protein RLS1 with NB-ARM Domains Is Involved in Chloroplast Degradation during leaf senescence in Rice.	Mol Plant	5(1)	205-17	2012	LRD43	RLS1, OsRLS1, OsLRD43, NOE2, OsNOE2
35161	21912213	Wang S.J., Kang C.H., Chen H.W.	Effect of the interaction between light and touch stimuli on inducing curling seminal roots in rice seedlings.	Plant Signal Behav	6(10)	1434-5	2011		
35164	22071266	Kim H., Hwang H., Hong J.W., Lee Y.N., Ahn I.P., Yoon I.S., Yoo S.D., Lee S., Lee S.C., Kim B.G.	A rice orthologue of the ABA receptor, OsPYL/RCAR5, is a positive regulator of the ABA signal transduction pathway in seed germination and early seedling growth.	J. Exp. Bot.	63(2)	1013-24	2012	LEA3-1,PYL/RCAR4,DHN1,PP2C30,ABI5,PP2C9,PYL/RCAR13,PP2C49,PYL/RCAR13,PYL/RCAR7,PYL/RCAR10,PYL/RCAR9,PYL/RCAR8,PYL/RCAR7,PYL/RCAR2,PYL/RCAR5,SAPK2,PYL/RCAR3,PYL/RCAR11,RAB16A,PYL/RCAR6	OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3, OsLEA3A, LEA3A,OsPYL/RCAR4, PYL4, OsPYL4, OsPYL6, PYL6,LIP9, OsLIP9, lip9, DHN1, DIP1, OsDip1, OsLEA23, OsDhn1, COR410, OsLEA23/DIP1, DIP1/OsLEA23,OsPP2C30, OsPP48, PP48,OsABI5, OsbZIP10, OsABF1, OREB1, OsABI5-1, OsABI5-2, OsOREB1, OREB1 ,OsPP15, PP15, OsPP2C09, PP2C09, OsPP2C9, OsPP2C3,OsEnS-89, OsPYL/RCAR13, OsPYL13, PYL13,OsPP2C49, OsPP76, PP76,OsPYL/RCAR1, PYL1, OsPYL1, OsPYL4, PYL4,OsPYL/RCAR7, OsPYL7, PYL7, OsPYL12,OsPYL/RCAR10, PYL10, OsPYL10, OsPYL1, PYL1, R10, OsPYL/R10,OsPYL/RCAR9, PYL9, OsPYL9, OsPYL2, PYL2,OsPYL/RCAR8, PYL8, OsPYL8, OsPYL9, PYL9, CAPIP1,OsPYL/RCAR7, PYL7, OsPYL7, OsPYL8, PYL8, OsEnS-90, RCAR1, OsRCAR1,OsPYL/RCAR2, PYL2, OsPYL2, OsPYL3, PYL3,OsPYL/RCAR5, PYL5, OsPYL5, OsPYL11, PYL11,OsSAPK2, OsSnRK2.2, SnRK2.2,OsPYL/RCAR3, PYL3, OsPYL3, OsPYL10, PYL10, OsRCAR1, RCAR1 ,OsPYL/RCAR11, OsPYL12, PYL12, OsPYL11, PYL11,Rab16A, rab21, RAB21, OsRab21, OsRAB21, OsRAB-21, OsRab16A, OsLEA29, rab16A, OsRAB16A,OsPYL/RCAR6, PYL6, OsPYL6, OsPYL5, PYL5
35165	22113535	Marazzi G., Cacciotti L., Pelliccia F., Iaia L., Volterrani M., Caminiti G., Sposato B., Massaro R., Grieco F., Rosano G.	Long-term effects of nutraceuticals (berberine, red yeast rice, policosanol) in elderly hypercholesterolemic patients.	Adv Ther	28(12)	1105-13	2011		
35167	22132208	Mukhopadhyay P., Reddy M.K., Singla-Pareek SL., Sopory S.K.	Transcriptional Downregulation of Rice rpL32 Gene under Abiotic Stress Is Associated with Removal of Transcription Factors within the Promoter Region.	PLoS ONE	6(11)	e28058	2011	_,_,_,_	rpL32_9.2,rpL32_8.1,rpL32_9.1,rpL32_9.3, RPL32, OsrpL32_9.3, OsRPL32
35168	22044963	Kouzai Y., Mochizuki S., Saito A., Ando A., Minami E., Nishizawa Y.	Expression of a bacterial chitosanase in rice plants improves disease resistance to the rice blast fungus Magnaporthe oryzae.	Plant Cell Rep.	31(4)	629-36	2012		
35174	22134721	Park H.M., Choi M.S., Kwak D.Y., Lee B.C., Lee J.H., Kim M.K., Kim Y.G., Shin D.B., Park S.K., Kim Y.H.	Suppression of NS3 and MP is important for the stable inheritance of RNAi-mediated Rice Stripe Virus (RSV) resistance obtained by targeting the fully complementary RSV-CP gene.	Mol. Cells	33(1)	43-51	2012		
35175	22067109	Takahashi R., Ishimaru Y., Nakanishi H., Nishizawa N.K.	Role of the iron transporter OsNRAMP1 in cadmium uptake and accumulation in rice.	Plant Signal Behav	6(11)		2011	IRT1,IRT2,NRAMP1	OsIRT1, ZIP10, OsZIP10, OsZIP12, ZIP12,OsIRT2, OsIRT1, OsZIP15, ZIP15,OsNramp1, OsNRAMP1, OsNramp6
35179	22173308	Xu X., Han Y., Wu G., Cai W., Yuan B., Wang H., Liu F., Wang M., Hua H.	Field evaluation of effects of transgenic cry1Ab/cry1Ac, cry1C and cry2A rice on Cnaphalocrocis medinalis and its arthropod predators.	Sci China Life Sci	54(11)	1019-28	2011		
35184	22124893	Rupwate S.D., Rajasekharan R.	C2 domain is responsible for targeting rice phosphoinositide specific phospholipase C.	Plant Mol. Biol.	78(3)	247-58	2012		
35185	22081040	Asp T., Byrne S., Gundlach H., Bruggmann R., Mayer K.F., Andersen J.R., Xu M., Greve M., Lenk I., L?bberstedt T.	Comparative sequence analysis of VRN1 alleles of Lolium perenne with the co-linear regions in barley, wheat, and rice.	Mol. Genet. Genomics	286(5-6)	433-47	2011		
35187	22086333	Phan H.A., Li S.F., Parish R.W.	MYB80, a regulator of tapetal and pollen development, is functionally conserved in crops.	Plant Mol. Biol.	78(1-2)	171-83	2012		
35193	22008150	Vikram P., Swamy B.M., Dixit S., Ahmed H.U., Teresa Sta Cruz M., Singh A.K., Kumar A.	qDTY1.1, a major QTL for rice grain yield under reproductive-stage drought stress with a consistent effect in multiple elite genetic backgrounds.	BMC Genet.	12	89	2011		
35195	22174442	Greenway H., Kulichikhin K.Y., Cawthray G.R., Colmer T.D.	pH regulation in anoxic rice coleoptiles at pH 3.5: biochemical pHstats and net H+ influx in the absence and presence of NOFormula.	J. Exp. Bot.	63(5)	1969-83	2012		
35197	22138855	Liu J., Zhang F., Zhou J., Chen F., Wang B., Xie X.	Phytochrome B control of total leaf area and stomatal density affects drought tolerance in rice.	Plant Mol. Biol.	78(3)	289-300	2012		
35198	22145600	Zhu L., Gu M., Meng X., Cheung S.C., Yu H., Huang J., Sun Y., Shi Y., Liu Q.	High-amylose rice improves indices of animal health in normal and diabetic rats.	Plant Biotechnol. J.	10(3)	353-62	2012		
35199	22209166	Zhang C., Yin Y., Zhang A., Lu Q., Wen X., Zhu Z., Zhang L., Lu C.	Comparative proteomic study reveals dynamic proteome changes between superhybrid rice LYP9 and its parents at different developmental stages.	J. Plant Physiol.	169(4)	387-98	2012		
35201	22132759	Ferse I., Langlitz M., Kleigrewe K., Rzeppa S., Lenczyk M., Harrer H., Cramer B., Humpf H.U.	Isolation and structure elucidation of two new cytotoxic metabolites from red yeast rice.	Nat. Prod. Res.	26(20)	1914-21	2012		
35202	22200664	Ye N., Zhu G., Liu Y., Zhang A., Li Y., Liu R., Shi L., Jia L., Zhang J.	Ascorbic acid and reactive oxygen species are involved in the inhibition of seed germination by abscisic acid in rice seeds.	J. Exp. Bot.	63(5)	1809-22	2012		
35203	22196402	Tian L., Tan L., Liu F., Cai H., Sun C.	Identification of quantitative trait loci associated with salt tolerance at seedling stage from Oryza rufipogon.	J Genet Genomics	38(12)	593-601	2011		
35207	22203474	Li X., Sun L., Tan L., Liu F., Zhu Z., Fu Y., Sun X., Sun X., Xie D., Sun C.	TH1, a DUF640 domain-like gene controls lemma and palea development in rice.	Plant Mol. Biol.	78(4-5)	351-9	2012	BLS1	OsBLS1, OsG1L6, G1L6, TH1, OsTH1, TH1/BSG1/BLS1/AFD1, BSG1, OsBSG1, AFD1, OsAFD1, BH1, OsBH1
35208	22164211	Zhang P., Li J., Li X., Liu X., Zhao X., Lu Y.	Population structure and genetic diversity in a rice core collection (Oryza sativa L.) investigated with SSR markers.	PLoS ONE	6(12)	e27565	2011		
35209	22188265	Kyndt T., Nahar K., Haegeman A., De Vleesschauwer D., H?fte M., Gheysen G.	Comparing systemic defence-related gene expression changes upon migratory and sedentary nematode attack in rice.	Plant Biol (Stuttg)	14 Suppl 1	73-82	2012		
35213	22268146	Niessen M., Krause K., Horst I., Staebler N., Klaus S., Gaertner S., Kebeish R., Araujo W.L., Fernie A.R., Peterhansel C.	Two alanine aminotranferases link mitochondrial glycolate oxidation to the major photorespiratory pathway in Arabidopsis and rice.	J. Exp. Bot.	63(7)	2705-16	2012		
35215	22261864	Zhou Y., Yuan Y., Yuan F., Wang M., Zhong H., Gu M., Liang G.	RNAi-directed down-regulation of RSV results in increased resistance in rice (Oryza sativa L.).	Biotechnol. Lett.	34(5)	965-72	2012		
35220	22270358	Hamada H., Kurusu T., Okuma E., Nokajima H., Kiyoduka M., Koyano T., Sugiyama Y., Okada K., Koga J., Saji H., Miyao A., Hirochika H., Yamane H., Murata Y., Kuchitsu K.	Regulation of a Proteinaceous Elicitor-induced Ca2+ Influx and Production of Phytoalexins by a Putative Voltage-gated Cation Channel, OsTPC1, in Cultured Rice Cells.	J. Biol. Chem.	287(13)	9931-9	2012		
35221	22267486	Mentlak T.A., Kombrink A., Shinya T., Ryder L.S., Otomo I., Saitoh H., Terauchi R., Nishizawa Y., Shibuya N., Thomma B.P., Talbot N.J.	Effector-mediated suppression of chitin-triggered immunity by magnaporthe oryzae is necessary for rice blast disease.	Plant Cell	24(1)	322-35	2012	CEBIP	CEBiP, Os-LYP1, LYP1, OsCEBiP
35224	22168839	Washida H., Sugino A., Doroshenk K.A., Satoh-Cruz M., Nagamine A., Katsube-Tanaka T., Ogawa M., Kumamaru T., Satoh H., Okita T.W.	RNA targeting to a specific ER sub-domain is required for efficient transport and packaging of alpha-globulins to the protein storage vacuole in developing rice endosperm.	Plant J.	70(3)	471-9	2012		
35228	22306743	Zhang Q., Zhang W., Lin C., Xu X., Shen Z.	Expression of an Acidothermus cellulolyticus endoglucanase in transgenic rice seeds.	Protein Expr. Purif.	82(2)	279-83	2012		
35229	22500165	Ichitani K., Takemoto Y., Iiyama K., Taura S., Sato M.	Chromosomal Location of HCA1 and HCA2, Hybrid Chlorosis Genes in Rice.	Int J Plant Genomics	2012	649081	2012		
35231	22136623	Sui P., Jin J., Ye S., Mu C., Gao J., Feng H., Shen W.H., Yu Y., Dong A.	H3K36 methylation is critical for brassinosteroid-regulated plant growth and development in rice.	Plant J.	70(2)	340-7	2012	D61,BU1,D11,SDG725	d61*, dwf42, d61, OsBRI1, OSBRI1, BRI1, Os BRI1, Osbri1, OsBRKq1, BRKq1,ILI4, OsILI4 , OsBU1, BU1/ILI4, OsbHLH172, bHLH172,d11(d8), dwf10, d8, D11/CYP724B1, d11, CYP724B1, GNS4, OsD11, PMM1, OsPMM1, PMM1/D11, NBG4, OsCPB1, CPB1, CPB1/D11,OsSDG725, OsSET8, ASHH2
35233	22489119	Yao Y., Cheng X.Z., Wang L.X., Wang S.H., Ren G.	Major Phenolic Compounds, Antioxidant Capacity and Antidiabetic Potential of Rice Bean (Vigna umbellata L.) in China.	Int J Mol Sci	13(3)	2707-16	2012		
35235	22236520	Wang Y.D., Wang X., Wong Y.S.	Proteomics analysis reveals multiple regulatory mechanisms in response to selenium in rice.	J Proteomics	75(6)	1849-66	2012		
35237	22218673	Li C., Wei J., Lin Y., Chen H.	Gene silencing using the recessive rice bacterial blight resistance gene xa13 as a new paradigm in plant breeding.	Plant Cell Rep.	31(5)	851-62	2012		
35239	22215564	Cao S., He X., Xu W., Luo Y., Yuan Y., Liu P., Cao B., Shi H., Huang K.	Safety assessment of transgenic Bacillus thuringiensis rice T1c-19 in Sprague-Dawley rats from metabonomics and bacterial profile perspectives.	IUBMB Life	64(3)	242-50	2012		
35241	22313362	Xin Z., Yu Z., Erb M., Turlings T.C., Wang B., Qi J., Liu S., Lou Y.	The broad-leaf herbicide 2,4-dichlorophenoxyacetic acid turns rice into a living trap for a major insect pest and a parasitic wasp.	New Phytol.	194(2)	498-510	2012		
35247	22350764	Mosa K.A., Kumar K., Chhikara S., McDermott J., Liu Z., Musante C., White J.C., Dhankher O.P.	Members of rice plasma membrane intrinsic proteins subfamily are involved in arsenite permeability and tolerance in plants.	Transgenic Res.	21(6)	1265-77	2012	PIP2;7,PIP2;4,PIP2;6	OsPIP2;7, PIP2.7, PIP2-7, OsPIP2-6, OsPIP-3A, PIP-3A,OsPIP2;4, PIP2.4, PIP2-4, OsPIP2-4,OsPIP2;6, PIP2-6, OsPIP2-6, PIP2-5, OsPIP2-5
35248	22312119	Swamy B.P., Kaladhar K., Shobha Rani N., Prasad G.S., Viraktamath B.C., Reddy G.A., Sarla N.	QTL Analysis for Grain Quality Traits in 2 BC2F2 Populations Derived from Crosses between Oryza sativa cv Swarna and 2 Accessions of O. nivara.	J. Hered.	103(3)	442-52	2012		
35250	22382063	Wu B., Han Z.M., Li Z.X., Xing Y.Z.	[Discovery of QTLs increasing yield related traits in common wild rice].	Yi Chuan	34(2)	215-22	2012		
35257	22325886	Cho K., Kim Y.C., Woo J.C., Rakwal R., Agrawal G.K., Yoeun S., Han O.	Transgenic expression of dual positional maize lipoxygenase-1 leads to the regulation of defense-related signaling molecules and activation of the antioxidative enzyme system in rice.	Plant Sci.	185-186	238-45	2012		
35265	22403030	Peng H., Chun J., Ai T.B., Tong Y.A., Zhang R., Zhao M.M., Chen F., Wang S.H.	MicroRNA profiles and their control of male gametophyte development in rice.	Plant Mol. Biol.	80(1)	85-102	2012		
35267	22443148	Busconi M., Rossi D., Lorenzoni C., Baldi G., Fogher C.	Spread of herbicide-resistant weedy rice (red rice, Oryza sativa L.) after 5?years of Clearfield rice cultivation in Italy.	Plant Biol (Stuttg)	14	751-759	2012		
35268	22443363	Abbruscato P., Nepusz T., Mizzi L., Del Corvo M., Morandini P., Fumasoni I., Michel C., Paccanaro A., Guiderdoni E., Schaffrath U., Morel J.B., Piffanelli P., Faivre-Rampant O.	OsWRKY22, a monocot WRKY gene, plays a role in the resistance response to blast.	Mol. Plant Pathol.	13(8)	828-41	2012		
35269	22445751	Yadavalli V., Neelam S., Rao A.S., Reddy A.R., Subramanyam R.	Differential degradation of photosystem I subunits under iron deficiency in rice.	J. Plant Physiol.	169(8)	753-9	2012		
35271	22487175	Todoroki Y., Naiki K., Muramatsu T., Ohnishi T., Ueno K., Mizutani M., Hirai N.	A conformationally restricted uniconazole analogue as a specific inhibitor of rice ent-kaurene oxidase, CYP701A6.	Bioorg. Med. Chem. Lett.	22(9)	3240-3	2012		
35274	22499179	Utsunomiya Y., Samejima C., Fujisawa Y., Kato H., Iwasaki Y.	Rice transgenic plants with suppressed expression of the beta subunit of the heterotrimeric G protein.	Plant Signal Behav	7(4)	443-6	2012		
35276	22345644	Kavitha P.G., Miller A.J., Mathew M.K., Maathuis F.J.	Rice cultivars with differing salt tolerance contain similar cation channels in their root cells.	J. Exp. Bot.	63(8)	3289-96	2012		
35279	22385556	Datta K., Baisakh N., Ganguly M., Krishnan S., Yamaguchi Shinozaki K., Datta S.K.	Overexpression of Arabidopsis and Rice stress genes' inducible transcription factor confers drought and salinity tolerance to rice.	Plant Biotechnol. J.	10(5)	579-86	2012		
35283	22156226	Miyao A., Nakagome M., Ohnuma T., Yamagata H., Kanamori H., Katayose Y., Takahashi A., Matsumoto T., Hirochika H.	Molecular spectrum of somaclonal variation in regenerated rice revealed by whole-genome sequencing.	Plant Cell Physiol.	53(1)	256-64	2012		
35284	22199373	Park Y.I., Do K.H., Kim I.S., Park H.H.	Structural and functional studies of casein kinase I-like protein from rice.	Plant Cell Physiol.	53(2)	304-11	2012		
35290	22112460	Onda Y., Kawagoe Y.	Oxidative protein folding: selective pressure for prolamin evolution in rice.	Plant Signal Behav	6(12)	1966-72	2011		
35291	21959793	Wongpanya R., Boonyalai N., Thammachuchourat N., Horata N., Arikit S., Myint K.M., Vanavichit A., Choowongkomon K.	Biochemical and enzymatic study of rice BADH wild-type and mutants: an insight into fragrance in rice.	Protein J.	30(8)	529-38	2011		
35293	22194018	Mishra P., Bhoomika K., Dubey R.S.	Differential responses of antioxidative defense system to prolonged salinity stress in salt-tolerant and salt-sensitive Indica rice (Oryza sativa L.) seedlings.	Protoplasma	250(1)	3-19	2013		
35295	22458437	Tuyen le Q., Liu Y., Jiang L., Wang B., Wang Q., Hanh T.T., Wan J.	Identification of quantitative trait loci associated with small brown planthopper (Laodelphax striatellus Fall?n) resistance in rice (Oryza sativa L.).	Hereditas	149(1)	16-23	2012		
35298	22189605	Sujatha K., Natarajkumar P., Laha G.S., Mishra B., Rao K.S., Viraktamath B.C., Kirti P.B., Hari Y., Balachandran S.M., Rajendrakumar P., Ram T., Hajira S.K., Madhav M.S., Neeraja C.N., Sundaram R.M.	Inheritance of bacterial blight resistance in the rice cultivar Ajaya and high-resolution mapping of a major QTL associated with resistance.	Genet Res (Camb)	93(6)	397-408	2011		
35299	22137606	Ji K., Wang Y., Sun W., Lou Q., Mei H., Shen S., Chen H.	Drought-responsive mechanisms in rice genotypes with contrasting drought tolerance during reproductive stage.	J. Plant Physiol.	169(4)	336-44	2012		
35302	22101345	Itoh H., Izawa T.	A study of phytohormone biosynthetic gene expression using a circadian clock-related mutant in rice.	Plant Signal Behav	6(12)	1932-6	2011		
35304	22150231	Xu M., Galhano R., Wiemann P., Bueno E., Tiernan M., Wu W., Chung I.M., Gershenzon J., Tudzynski B., Sesma A., Peters R.J.	Genetic evidence for natural product-mediated plant-plant allelopathy in rice (Oryza sativa).	New Phytol.	193(3)	570-5	2012		
35306	22161313	Sun H., Huang X., Xu X., Lan H., Huang J., Zhang H.S.	ENAC1, a NAC Transcription Factor, is an Early and Transient Response Regulator Induced by Abiotic Stress in Rice (Oryza sativa L.).	Mol. Biotechnol.	52(2)	101-10	2012		
35307	22187088	Hou M., Xu W., Bai H., Liu Y., Li L., Liu L., Liu B., Liu G.	Characteristic expression of rice pathogenesis-related proteins in rice leaves during interactions with Xanthomonas oryzae pv. oryzae.	Plant Cell Rep.	31(5)	895-904	2012		
35315	22359609	Liu C., Li J., Gao J., Shen Z., Lu B.R., Lin C.	A built-in mechanism to mitigate the spread of insect-resistance and herbicide-tolerance transgenes into weedy rice populations.	PLoS ONE	7(2)	e31625	2012		
35318	22368182	Wang H.W., Hwang S.G., Karuppanapandian T., Liu A., Kim W., Jang C.S.	Insight into the Molecular Evolution of Non-Specific Lipid Transfer Proteins via Comparative Analysis Between Rice and Sorghum.	DNA Res.	19(2)	179-94	2012	LTP1,_,_,_,_,_,_,_,_,_,_,_,_,_,_,PTD1,_,_,_,_,LTP1.15	Ltp1, RLTP1,OsLTP1.20, OsLtpI.20, LTP1.20, OsLTPL14, LTPL14,OsLTP1.1, T42, OsLtp1.1, LTP1.1,OsLTP1.13, OsLtpI.13,OsLTP1.12, OsLtpI.12,OsLTPd6, OsLtpV.2,OsLTP1.8, OsLtpI.8,OsLTP1.6, OsLtpI.6,OsLTP1.7, OsLtpI.7,OsLTP1.4, OsLtpI.4,OsLTPd5, LTPd5,OsLTP1.9, OsLtpI.9,OsLTP1.14, OsLtpI.14,OsLTP1.16, OsLtpI.16,OsLTP1.17, b1, LTP2, OsLtpI.17,OsLTP1.2, OsLtpI.2, OsPTD1, Psd1,OsLTP1.3, OsLtpI.3,OsLTP1.18, OsLTP1, nsLTP1, a15, OsLtpI.18, LTPC2, OsLTPC2,OsLTPd8, OsLtpV.4, PI,OsLTP1.19, OsLtpI.19,OsLTP1.15, OsLtp1.15, OsLTPL23, LTPL23
35322	22268496	Xu C., Cheng Z., Yu W.	Construction of rice mini-chromosomes by Telomere-mediated chromosomal truncation.	Plant J.	70(6)	1070-9	2012		
35323	22266099	Miyamoto K., Shimizu T., Lin F., Sainsbury F., Thuenemann E., Lomonossoff G., Nojiri H., Yamane H., Okada K.	Identification of an E-box motif responsible for the expression of jasmonic acid-induced chitinase gene OsChia4a in rice.	J. Plant Physiol.	169(6)	621-7	2012		
35325	22457828	Li J., Chu H., Zhang Y., Mou T., Wu C., Zhang Q., Xu J.	The Rice HGW gene Encodes a Ubiquitin-Associated (UBA) Domain Protein That Regulates heading date and grain weight.	PLoS ONE	7(3)	e34231	2012	HGW	OsHGW
35326	22218926	Ji Q., Zhang M., Lu J., Wang H., Lin B., Liu Q., Chao Q., Zhang Y., Liu C., Gu M., Xu M.	Molecular basis underlying the S5-dependent reproductive isolation and compatibility of indica/japonica rice hybrids.	Plant Physiol.	158(3)	1319-28	2012		
35327	22239707	Badawi A.M., Fahmy A.A., Mohamed K.A., Noor El-Din MR., Riad M.G.	Enhancement of ethanol production by simultaneous saccharification and fermentation (SSF) of rice straw using ethoxylated span 20.	Prep. Biochem. Biotechnol.	42(1)	44-59	2012		
35329	22118621	Siahpoosh M.R., Sanchez D.H., Schlereth A., Scofield G.N., Furbank R.T., van Dongen JT., Kopka J.	Modification of OsSUT1 gene expression modulates the salt response of rice Oryza sativa cv. Taipei 309.	Plant Sci.	182	101-11	2012		
35330	22284568	Baisakh N., Ramanarao M.V., Rajasekaran K., Subudhi P., Janda J., Galbraith D., Vanier C., Pereira A.	Enhanced salt stress tolerance of rice plants expressing a vacuolar H(+) -ATPase subunit c1 (SaVHAc1) gene from the halophyte grass Spartina alterniflora L?isel.	Plant Biotechnol. J.	10(4)	453-464	2012		
35332	22448240	He M., Kershaw M.J., Soanes D.M., Xia Y., Talbot N.J.	Infection-Associated Nuclear Degeneration in the Rice Blast Fungus Magnaporthe oryzae Requires Non-Selective Macro-Autophagy.	PLoS ONE	7(3)	e33270	2012		
35339	22378952	Yang L., Hirose S., Suzuki K., Hiroi T., Takaiwa F.	Expression of hypoallergenic Der f 2 derivatives with altered intramolecular disulphide bonds induces the formation of novel ER-derived protein bodies in transgenic rice seeds.	J. Exp. Bot.	63(8)	2947-59	2012		
35343	22353574	De Vleesschauwer D., Van Buyten E., Satoh K., Balidion J., Mauleon R., Choi I.R., Vera-Cruz C., Kikuchi S., H?fte M.	Brassinosteroids antagonize gibberellin- and salicylate-mediated root immunity in rice.	Plant Physiol.	158(4)	1833-46	2012		
35346	22321318	Suzuki Y., Fujimori T., Kanno K., Sasaki A., Ohashi Y., Makino A.	Metabolome analysis of photosynthesis and the related primary metabolites in the leaves of transgenic rice plants with increased or decreased Rubisco content.	Plant Cell Environ.	35(8)	1369-79	2012		
35348	22317787	Nounjan N., Nghia P.T., Theerakulpisut P.	Exogenous proline and trehalose promote recovery of rice seedlings from salt-stress and differentially modulate antioxidant enzymes and expression of related genes.	J. Plant Physiol.	169(6)	596-604	2012		
35354	22382682	Kim I.S., Kim Y.S., Yoon H.S.	Rice ASR1 protein with reactive oxygen species scavenging and chaperone-like activities enhances acquired tolerance to abiotic stresses in Saccharomyces cerevisiae.	Mol. Cells	33(3)	285-93	2012		
35355	22326950	Sivagami G., Karthikkumar V., Balasubramanian T., Nalini N.	The modulatory influence of p-methoxycinnamic acid, an active rice bran phenolic acid, against 1,2-dimethylhydrazine-induced lipid peroxidation, antioxidant status and aberrant crypt foci in rat colon carcinogenesis.	Chem. Biol. Interact.	196(1-2)	11-22	2012		
35356	22348505	Saito Y., Shigemitsu T., Yamasaki R., Sasou A., Goto F., Kishida K., Kuroda M., Tanaka K., Morita S., Satoh S., Masumura T.	Formation mechanism of the internal structure of type?I protein bodies in rice endosperm: relationship between the localization of prolamin species and the expression of individual genes.	Plant J.	70(6)	1043-55	2012	PRO13B.19,PRO13B.20,PRO13B.22,PRO13A.2,PRO13B.6,PRO13B.21,PRO10.2,PRO13B.12,PRO13B.15,PRO13B.16,PRO13B.17,CYSP13,PRO13B.9,PRO10.3,PRO13A.6,PRO16.1,PRO13A.5,PRO13B.7,PRO10.4,CYSR10,PRO13B.13,PRO13B.3,PRO13B.10,PRO13B.4,PRO13B.1,PRO13B.5,PRO13B.8,PRO13B.14,PRO13B.18,PRO13B.2,PRO13A.4,PRO13A.1,PRO13A.3,PRO16.2	OsEnS-76, pro13b.19, OsPRO13B.19,pro13b.20, OsPRO13B.20,Prol-15, pro13b.22, OsPRO13B.22,Prol-19, OsEnS-94, RM1, OsRM1, pro13a.2, OsPRO13A.2, PROLM26,pro13b.6, OsPRO13B.6, Prol-07,Prol-14, pro13b.21, OsPRO13B.21, PROLM17,OsEnS-56, pro10.2, OsPRO10.2,pro13b.12, OsPRO13B.12,pro13b.15, OsPRO13B.15, PROLM11,Prol-10, pro13b.16, OsPRO13B.16, PROLM12,Prol-11, pro13b.17, OsPRO13B.17, PROLM13,CysP13, OsCYSP13, CpP13, PG5a, Prol-06, pro13b.11, OsPRO13B.11, PROLM9, OsPROLM9,Prol-05, pro13b.9, OsPRO13B.9,Prol-02, pro10.3, OsPRO10.3,Prol-26, pro13a.6, OsPRO13A.6,Prol-16, OsEnS-87, EnS-87, pro16.1, OsPRO16.1,pro13a.5, OsPRO13A.5,pro13b.7, OsPRO13B.7,Prol-23, pro10.4, SSA5, OsPRO10.4,Prol-01, CysR10, OsCysR10, crP10, pro10.1, Ospro10.1,pro13b.13, OsPRO13b.13,Prol-22, pro13b.3, OsPRO13B.3, PROLM22,pro13b.10, OsPRO13B.10,pro13b.4, OsPRO13B.4,Prol-20, pro13b.1, OsPRO13B.1, PROLM19 ,Prol-03, pro13b.5, OsPRO13B.5,Prol-04, pro13b.8, OsPRO13B.8, PROLM4,PG5b, Prol-08, pro13b.14, OsPRO13B.14,Prol-12, pro13b.18, OsPRO13B.18,Prol-21, pro13b.2, OsPRO13B.2, PROLM20,Prol-25, Prol-28, Prol-29, Prol-30, pro13a.4, OsPRO13A.4, PROLM28,RP6, Prol-18, OsEnS-93, pro13a.1, OsPRO13A.1, PROLM25,Prol-24, pro13a.3, OsPRO13A.3,Prol-17, OsEnS-88, pro16.2, OsPRO16.2, PROLM24
35357	22361948	Dixit S., Swamy B.P., Vikram P., Ahmed H.U., Sta Cruz MT., Amante M., Atri D., Leung H., Kumar A.	Fine mapping of QTLs for rice grain yield under drought reveals sub-QTLs conferring a response to variable drought severities.	Theor. Appl. Genet.	125(1)	155-69	2012		
35359	22340849	Christensen A.R., Malcomber S.T.	Duplication and diversification of the LEAFY HULL STERILE1 and Oryza sativa MADS5 SEPALLATA lineages in graminoid Poales.	Evodevo	3	4	2012	LHS1,PAP2,MADS5	OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO, OsLHS1, OsLG3b, LG3b, qLGY3, LGY3, DLN80, OsDLN80, OLR, OsOLR, GW3p6, OsGW3p6, OsMADS1GW3p6, MADS1GW3p6, qLGY3/OsLG3b/GW3p6,MADS34, OsMADS34, RMADS212/RMADS217/RMADS221, OsPAP2/MADS34, MADS34/PAP2, PAP2/OsMADS34, OsMADS34/PAP2, OsMADS19,OsMADS5, FDRMADS2
35360	22378946	Liu H.L., Yin Z.J., Xiao L., Xu Y.N., Qu L.Q.	Identification and evaluation of omega-3 fatty acid desaturase genes for hyperfortifying alpha-linolenic acid in transgenic rice seed.	J. Exp. Bot.	63(8)	3279-87	2012		
35364	22413771	S H., Oo A., P H., Eh M.	The photoprotective protein PsbS exerts control over CO(2) assimilation rate in fluctuating light in rice.	Plant J.	71(3)	402-12	2012		
35365	22438302	Madan P., Jagadish S.V., Craufurd P.Q., Fitzgerald M., Lafarge T., Wheeler T.R.	Effect of elevated CO2 and high temperature on seed-set and grain quality of rice.	J. Exp. Bot.	63(10)	3843-52	2012		
35366	22443269	Song X., Wang D., Ma L., Chen Z., Li P., Cui X., Liu C., Cao S., Chu C., Tao Y., Cao X.	Rice RNA-dependent RNA polymerase 6 acts in small RNA biogenesis and spikelet development.	Plant J.	71(3)	378-89	2012	SHL2,ETT1,ETT2,SHO1	shl2, SHL2, sh2, OsRDR6, RDR6,OsARF15, ARF15, OsETT1, ARF3b, OsARF3b, OsARF3-1, ARF3-1, OsARF3, ARF3, DLN154, OsDLN154,OsARF2, ARF2, OsETT2, ARF3a, OsARF3a, DLN16, OsDLN16, ARF3,sho1, DCL4, OsDCL4, Os DCL4, Dcl4 
35368	22492233	Mutuku J.M., Nose A.	Changes in the Contents of Metabolites and Enzyme Activities in Rice Plants Responding to Rhizoctonia solani Kuhn Infection: Activation of Glycolysis and Connection to Phenylpropanoid Pathway.	Plant Cell Physiol.	53(6)	1017-32	2012	PFPB,PFPA3,PFK6	OsPFPB, OsPFP-B, PFP-B, PFPbeta,OsPFPA3, OsPFP1a3, PFP1a3, PFP-ALPHA, OsPFP-ALPHA,OsPFK06, PFK06
35372	22434153	Turan S., Tripathy B.C.	Salt and genotype impact on antioxidative enzymes and lipid peroxidation in two rice cultivars during de-etiolation.	Protoplasma	250(1)	209-22	2013		
35373	22414443	Nakamura Y., Ono M., Utsumi C., Steup M.	Functional Interaction between Plastidial Starch Phosphorylase and Starch Branching Enzymes from Rice during the Synthesis of Branched Maltodextrins.	Plant Cell Physiol.	53(5)	869-78	2012	SBE1,PHO1,SBE4,SBE3	sbe1, Rbe1. Sbe1, sbe1*(QEI), RBE1, BEI, SBE I, QEI, OsBEI, BE1, OsSBE1, OsSBEI, SBEI,Pho1, OsPho1, OsPHOL, PHOL, OsPHOI, PHOI,RBE4, OsSBE4, BEIIa, QEIIb, BEIIA, OsBEIIa,SBEIII*, SBEIII, Sbe3, RBE3, QEIIa, QEIIA, BEIIb, BEIIB, SBEIIb, OsBEIIb, sbe3, SBE III, OsSBEIIb, SBEIIb
35375	22447493	Rawat N., Chiruvuri Naga N., Raman Meenakshi S., Nair S., Bentur J.S.	A novel mechanism of gall midge resistance in the rice variety Kavya revealed by microarray analysis.	Funct. Integr. Genomics	12(2)	249-64	2012		
35376	22409537	Thangasamy S., Chen P.W., Lai M.H., Chen J., Jauh G.Y.	Rice LGD1 containing RNA binding activity affects growth and development through alternative promoters.	Plant J.	71(2)	288-302	2012	LGD1	
35380	22408076	Yin L.L., Xue H.W.	The MADS29 Transcription Factor Regulates the Degradation of the Nucellus and the nucellar projection during Rice Seed Development.	Plant Cell	24(3)	1049-65	2012		
35381	22393242	Shen Y., Tang D., Wang K., Wang M., Huang J., Luo W., Luo Q., Hong L., Li M., Cheng Z.	ZIP4 in homologous chromosome synapsis and crossover formation in rice meiosis.	J. Cell. Sci.	125(Pt 11)	2581-91	2012	ZIP4,ZEP1,RMC1	OsZIP4, SPO22, OsSPO22,OsZEP1,MER3, mer3, OsMER3, RCK, OsRCK, Os-MER3
35391	22183295	Baruch O., Kashkush K.	Analysis of copy-number variation, insertional polymorphism, and methylation status of the tiniest class I (TRIM) and class II (MITE) transposable element families in various rice strains.	Plant Cell Rep.	31(5)	885-93	2012		
35392	22139140	Huang W., Hu J., Yu C., Huang Q., Wan L., Wang L., Qin X., Ji Y., Zhu R., Li S., Zhu Y.	Two non-allelic nuclear genes restore fertility in a gametophytic pattern and enhance abiotic stress tolerance in the hybrid rice plant.	Theor. Appl. Genet.	124(5)	799-807	2012	_	Rf6
35393	22179305	Chen M., Luo J., Shao G., Wei X., Tang S., Sheng Z., Song J., Hu P.	Fine mapping of a major QTL for flag leaf width in rice, qFLW4, which might be caused by alternative splicing of NAL1.	Plant Cell Rep.	31(5)	863-72	2012	NAL1	nal1, cul1, GPS, SPIKE, SPIKE/LSCHL4/NAL1/GPS, SPIKE/NAL1, LSCHL4, OsNAL1
35394	22194889	Usuki S., Tsai Y.Y., Morikawa K., Nonaka S., Okuhara Y., Kise M., Yu R.K.	IGF-1 induction by acylated steryl beta-glucosides found in a pre-germinated brown rice diet reduces oxidative stress in streptozotocin-induced diabetes.	PLoS ONE	6(12)	e28693	2011		
35400	22207572	Tsuda K., Ito Y., Sato Y., Kurata N.	Positive autoregulation of a KNOX gene is essential for shoot apical meristem maintenance in rice.	Plant Cell	23(12)	4368-81	2011	OSKN2,OSH6,OSH43,OSH15,OSH1	OsKn2, OsH71, HOS9, OSH71, OSH71/Oskn2,OsH6, HOS16,OsH43, H43,OSH15, OsH15, OSKN3, Oskn3, HOS3, D6, d6, OSH15/Oskn3, HB253, H15, OsKNOX3, KNOX3,OSKN1, Oskn1, OsKN1, OSH1/Oskn1, HB75
35406	22213809	Kovalchuk N., Smith J., Bazanova N., Pyvovarenko T., Singh R., Shirley N., Ismagul A., Johnson A., Milligan A.S., Hrmova M., Langridge P., Lopato S.	Characterization of the wheat gene encoding a grain-specific lipid transfer protein TdPR61, and promoter activity in wheat, barley and rice.	J. Exp. Bot.	63(5)	2025-40	2012		
35410	22212906	Park S.H., Bang S.W., Jeong J.S., Jung H., Redillas M.C., Kim H.I., Lee K.H., Kim Y.S., Kim J.K.	Analysis of the APX, PGD1 and R1G1B constitutive gene promoters in various organs over three homozygous generations of transgenic rice plants.	Planta	235(6)	1397-408	2012		
35412	22351029	Wakasa Y., Takaiwa F.	Use of a callus-specific selection system to develop transgenic rice seed accumulating a high level of recombinant protein.	Methods Mol. Biol.	847	467-79	2012		
35416	22291889	Li X., Yan W., Agrama H., Jia L., Jackson A., Moldenhauer K., Yeater K., McClung A., Wu D.	Unraveling the complex trait of harvest index with association mapping in rice (Oryza sativa L.).	PLoS ONE	7(1)	e29350	2012		
35418	22306876	Zhang F.T., Fang J., Sun C.H., Li R.B., Luo X.D., Xie J.K., Deng X.J., Chu C.C.	[Characterisation of a rice dwarf and twist leaf 1 (dtl1) mutant and fine mapping of dtl1 gene].	Yi Chuan	34(1)	79-86	2012		
35419	22271747	Xie K., Shen J., Hou X., Yao J., Li X., Xiao J., Xiong L.	Gradual increase of miR156 regulates temporal expression changes of numerous genes during leaf development in rice.	Plant Physiol.	158(3)	1382-94	2012	LCRN1,GLW7 ,SPL12,SPL17,WFP	OsSPL3, SPL3, OsLCRN1,OsSPL13, SPL13, OsGLW7,OsSPL12, DLN176, OsDLN176,OsSPL17,OsSPL14, SPL14, IPA1, WFP/IPA1, OsSPL14/WFP/IPA1, OsIPA1,  IPA1/OsSPL14
35420	22257489	Yang X., Li Y., Ren B., Ding L., Gao C., Shen Q., Guo S.	Drought-induced root aerenchyma formation restricts water uptake in rice seedlings supplied with nitrate.	Plant Cell Physiol.	53(3)	495-504	2012		
35422	22306354	Thounaojam T.C., Panda P., Mazumdar P., Kumar D., Sharma G.D., Sahoo L., Panda S.K.	Excess copper induced oxidative stress and response of antioxidants in rice.	Plant Physiol. Biochem.	53	33-9	2012		
35429	22324885	Scafaro A.P., Yamori W., Carmo-Silva AE., Salvucci M.E., Von Caemmerer S., Atwell B.J.	Rubisco activity is associated with photosynthetic thermotolerance in a wild rice (Oryza meridionalis).	Physiol Plant	146(1)	99-109	2012		
35433	22458969	Sun Y., Lin Z., Reinders A., Ward J.M.	Functionally Important Amino Acids in Rice sucrose transporter OsSUT1.	Biochemistry	51(15)	3284-91	2012	SUT1	OsSUT1, OsSUT2
35434	22481119	Abe A., Takagi H., Fujibe T., Aya K., Kojima M., Sakakibara H., Uemura A., Matsuoka M., Terauchi R.	OsGA20ox1, a candidate gene for a major QTL controlling seedling vigor in rice.	Theor. Appl. Genet.	125(4)	647-57	2012		
35435	22489666	Yamane K., Mitsuya S., Taniguchi M., Miyake H.	Salt-induced chloroplast protrusion is the process of exclusion of ribulose-1,5-bisphosphate carboxylase/oxygenase from chloroplasts into cytoplasm in leaves of rice.	Plant Cell Environ.	35(9)	1663-71	2012		
35436	22420996	Cho S.C., Chao Y.Y., Kao C.H.	Calcium deficiency increases Cd toxicity and Ca is required for heat-shock induced Cd tolerance in rice seedlings.	J. Plant Physiol.	169(9)	892-8	2012		
35439	22434195	Lin Q., Wang D., Dong H., Gu S., Cheng Z., Gong J., Qin R., Jiang L., Li G., Wang J.L., Wu F., Guo X., Zhang X., Lei C., Wang H., Wan J.	Rice APC/C(TE) controls tillering by mediating the degradation of MONOCULM 1.	Nat Commun	3	752	2012	TAD1,CCS52B,MOC1	TAD1, OsCCS52A, TE, OsWD40-61, TAD1/TE, CCS52A1 ,  OsCCS52A1/TE/TAD1, CCS52A1/TE/TAD1, OsCDH1A, CDH1A,OsWD40-33, WD40-33, OsCCS52B,  OsCCS52B, CCS52B, OsCDH1B, CDH1B,moc1, OsMOC1, OsGRAS-33, OsGRAS33, GRAS-33, GRAS33, GNP6, OsGNP6
35441	22396244	Singh S.B., Sharma R., Singh N.	Persistence of pyrazosulfuron in rice-field and laboratory soil under Indian tropical conditions.	Pest Manag. Sci.	68(6)	828-33	2012		
35444	22452575	Huynh V.B., Repellin A., Zuily-Fodil Y., Pham-Thi AT.	Aluminum stress response in rice: effects on membrane lipid composition and expression of lipid biosynthesis genes.	Physiol Plant	146(3)	272-84	2012		
35446	22325870	Lee J.H., Park S.H., Ahn J.H.	Functional conservation and diversification between rice OsMADS22/OsMADS55 and Arabidopsis SVP proteins.	Plant Sci.	185-186	97-104	2012		
35449	22470057	Fukayama H., Ueguchi C., Nishikawa K., Katoh N., Ishikawa C., Masumoto C., Hatanaka T., Misoo S.	Overexpression of Rubisco Activase Decreases the Photosynthetic CO2 Assimilation Rate by Reducing Rubisco Content in Rice Leaves.	Plant Cell Physiol.	53(6)	976-86	2012	RBCS3,RBCS5,RBCS1,RBCL,RCA,RBCS,RBCS4	RbcS3, OsRBCS3, OsRbcS3, rbcS ,RbcS5, OsRBCS5, OsRbcS5, RbcS3, OsRbcS3,RbcS1, OsRBCS1, OsRbcS1,rbcL, rbcA, OsrbcL,OsRcaII, rca, rcaII, OsRcaI, RCAI, ME137, OsRCA1, RCA, RCAalpha, OsRCAalpha, OsRCAbeta,rbcS, OsRbcS, RBCS-C, RbcS2, OsRBCS2, RbcS1, OsRbcS2, OsrbcS1,RbcS, RbcS4, OsRBCS4, OsRbcS4
35451	22499169	Ganguly M., Datta K., Roychoudhury A., Gayen D., Sengupta D.N., Datta S.K.	Overexpression of Rab16A gene in indica rice variety for generating enhanced salt tolerance.	Plant Signal Behav	7(4)	502-9	2012		
35455	22238157	Pengthaisong S., Withers S.G., Kuaprasert B., Svasti J., Cairns J.R.	The role of the oligosaccharide binding cleft of rice BGlu1 in hydrolysis of cellooligosaccharides and in their synthesis by rice BGlu1 glycosynthase.	Protein Sci.	21(3)	362-72	2012		
35457	22456953	Miyamoto K., Shimizu T., Mochizuki S., Nishizawa Y., Minami E., Nojiri H., Yamane H., Okada K.	Stress-induced expression of the transcription factor RERJ1 is tightly regulated in response to jasmonic acid accumulation in rice.	Protoplasma	250(1)	241-9	2013	BHLH6	OsbHLH006, bHLH006, OsbHLH6, bHLH6, RERJ1, OsRERJ1, bHLH35
35458	22389198	Itoh M., Nishibori N., Sagara T., Horie Y., Motojima A., Morita K.	Extract of Fermented Brown Rice Induces Apoptosis of Human Colorectal Tumor Cells by Activating Mitochondrial Pathway.	Phytother Res	26(11)	1661-6	2012		
35464	22136218	Moumeni A., Satoh K., Kondoh H., Asano T., Hosaka A., Venuprasad R., Serraj R., Kumar A., Leung H., Kikuchi S.	Comparative analysis of root transcriptome profiles of two pairs of drought-tolerant and susceptible rice near-isogenic lines under different drought stress.	BMC Plant Biol.	11	174	2011		
35465	22157085	Chen L.Q., Qu X.Q., Hou B.H., Sosso D., Osorio S., Fernie A.R., Frommer W.B.	Sucrose efflux mediated by SWEET proteins as a key step for phloem transport.	Science	335(6065)	207-11	2012	XA41,XA13	OsSWEET14, SWEET14, Os11N3, Os-11N3, 11N3, Xa41(t), xa41, Os11N3/SWEET14, OsSWEET14/Os11N3,xa13, Xa13, Os8N3, Os-8N3, 8N3, OsSWEET11, SWEET11, OsSWEET11/Xa13, Xa13/Os8N3/SWEET11, Os8N3/Xa13, OsSWEET11/Os8N3, OsSWEET11a, SWEET11a
35475	22271304	Chang Y., Zhao C., Zhu Z., Wu Z., Zhou J., Zhao Y., Lu X., Xu G.	Metabolic profiling based on LC/MS to evaluate unintended effects of transgenic rice with cry1Ac and sck genes.	Plant Mol. Biol.	78(4-5)	477-87	2012		
35476	22363605	Yoshimura Y., Zaima N., Moriyama T., Kawamura Y.	Different localization patterns of anthocyanin species in the pericarp of black rice revealed by imaging mass spectrometry.	PLoS ONE	7(2)	e31285	2012		
35477	22289080	Byeon Y., Park S., Kim Y.S., Park D.H., Lee S., Back K.	Light-regulated melatonin biosynthesis in rice during the senescence process in detached leaves.	J. Pineal Res.	53(1)	107-11	2012		
35478	22257308	Subramoni S., Pandey A., Vishnupriya M.R., Patel H.K., Sonti R.V.	The ColRS system of Xanthomonas oryzae pv. oryzae is required for virulence and growth in iron-limiting conditions.	Mol. Plant Pathol.	13(7)	690-703	2012		
35481	22384086	Guo W., Zou L.F., Li Y.R., Cui Y.P., Ji Z.Y., Cai L.L., Zou H.S., Hutchins W.C., Yang C.H., Chen G.Y.	Fructose-bisphophate aldolase exhibits functional roles between carbon metabolism and the hrp system in rice pathogen Xanthomonas oryzae pv. oryzicola.	PLoS ONE	7(2)	e31855	2012		
35487	22252123	Bai Y.Y., Yan R.H., Ye G.Y., Huang F., Wangila D.S., Wang J.J., Cheng J.A.	Field response of aboveground non-target arthropod community to transgenic Bt-Cry1Ab rice plant residues in postharvest seasons.	Transgenic Res.	21(5)	1023-32	2012		
35489	22468358	Randhawa G.J., Singh M.	Multiplex, construct-specific, and real-time PCR-based analytical methods for Bt rice with cry1Ac gene.	J AOAC Int	95(1)	186-94			
35494	22361804	Farr? G., Sudhakar D., Naqvi S., Sandmann G., Christou P., Capell T., Zhu C.	Transgenic rice grains expressing a heterologous rho-hydroxyphenylpyruvate dioxygenase shift tocopherol synthesis from the gamma to the alpha isoform without increasing absolute tocopherol levels.	Transgenic Res.	21(5)	1093-7	2012		
35499	22446601	Liu F., Zhao Y.Y., Zheng J.G.	High-level expression of modified gene encoding human adiponectin in transgenic rice.	Biol. Res.	44(4)	369-375	2011		
35503	22195579	Bocco R., Lorieux M., Seck P.A., Futakuchi K., Manneh B., Baimey H., Ndjiondjop M.N.	Agro-morphological characterization of a population of introgression lines derived from crosses between IR 64 (Oryza sativa indica) and TOG 5681 (Oryza glaberrima) for drought tolerance.	Plant Sci.	183	65-76	2012		
35507	22334645	Ito S., Song Y.H., Josephson-Day AR., Miller R.J., Breton G., Olmstead R.G., Imaizumi T.	FLOWERING BHLH transcriptional activators control expression of the photoperiodic flowering regulator CONSTANS in Arabidopsis.	Proc. Natl. Acad. Sci. U.S.A.	109(9)	3582-7	2012	GN8.1	OsFBH1, OsbHLH112, DLN213, OsDLN213, Gn8.1, OsGn8.1
35512	22418094	Pengthaisong S., Chen C.F., Withers S.G., Kuaprasert B., Ketudat Cairns JR.	Rice BGlu1 glycosynthase and wild type transglycosylation activities distinguished by cyclophellitol inhibition.	Carbohydr. Res.	352	51-9	2012		
35514	22305189	Que S., Li K., Chen M., Wang Y., Yang Q., Zhang W., Zhang B., Xiong B., He H.	PhosphoRice: a meta-predictor of rice-specific phosphorylation sites.	Plant Methods	8	5	2012		
35516	22417733	Frei M., Wissuwa M., Pariasca-Tanaka J., Chen C.P., S?dekum KH., Kohno Y.	Leaf ascorbic acid level - Is it really important for ozone tolerance in rice?	Plant Physiol. Biochem.	59	63-70	2012	_	OsGME1, GME1
35520	22349461	Zhou H., Liu Q., Li J., Jiang D., Zhou L., Wu P., Lu S., Li F., Zhu L., Liu Z., Chen L., Liu Y.G., Zhuang C.	Photoperiod- and thermo-sensitive genic male sterility in rice are caused by a point mutation in a novel noncoding RNA that produces a small RNA.	Cell Res.	22(4)	649-60	2012	_	P/TMS12-1, osa-smR5864w, osa-smR5864m
35524	22382062	Wang X.F., Chen X.Y., Zhang X.M., Zhou Y., Zhang H.C., Miao Q.M., Fang J., Xu J.F.	[Molecular characteristics and specific PCR detection of transgenic rice containing Cry1Ab].	Yi Chuan	34(2)	208-14	2012		
35526	22470056	Lv M.Z., Chao D.Y., Shan J.X., Zhu M.Z., Shi M., Gao J.P., Lin H.X.	Rice carotenoid beta-ring hydroxylase CYP97A4 is Involved in Lutein Biosynthesis.	Plant Cell Physiol.	53(6)	987-1002	2012	CYP97C2,CYP97B4,CYP97A4	OsCYP97C2,CYP97B4, CYP97B4a,CYP97A4, OsCYP97A4
35528	22462395	Nam M.H., Huh S.M., Kim K.M., Park W.J., Seo J.B., Cho K., Kim D.Y., Kim B.G., Yoon I.S.	Comparative proteomic analysis of early salt stress-responsive proteins in roots of SnRK2 transgenic rice.	Proteome Sci	10(1)	25	2012		
35529	22494411	Dalal V.K., Tripathy B.C.	Modulation of chlorophyll biosynthesis by water stress in rice seedlings during chloroplast biogenesis.	Plant Cell Environ.	35(9)	1685-703	2012		
35536	22448681	Ono A., Yamaguchi K., Fukada-Tanaka S., Terada R., Mitsui T., Iida S.	A null mutation of ROS1a for DNA demethylation in rice is not transmittable to progeny.	Plant J.	71(4)	564-74	2012	DNG701,DNG704,DML3B,ROS1B,DML3A,TA2	ROS1C, ROS1c, Os ROS1C, DME2, OsDNG701, ROS1C/DNG701,OsROS1D, ROS1D, ROS1d, ROS1D/DNG704, OsDNG704,DML3b, OsDML3b,OsROS1B,DML3a, OsDML3a,ROS1A, ROS1a, DME1, OsROS1A, OsROS1, ROS1, mOsROS1, ROS1A/DNG702, DNG702, OsDNG702
35538	22414560	Krom N., Ramakrishna W.	Retrotransposon insertions in rice gene pairs associated with reduced conservation of gene pairs in grass genomes.	Genomics	99(5)	308-14	2012		
35539	22388917	Ye R., Zhou F., Lin Y.	Two novel positive cis-regulatory elements involved in green tissue-specific promoter activity in rice (Oryza sativa L ssp.).	Plant Cell Rep.	31(7)	1159-72	2012	DX1	OsDX1
35541	22419106	Shao T., Qian Q., Tang D., Chen J., Li M., Cheng Z., Luo Q.	A novel gene IBF1 is required for the inhibition of brown pigment deposition in rice hull furrows.	Theor. Appl. Genet.	125(2)	381-90	2012		
35551	22458212	Gonz?lez A., Labr?n N., Alvarez R.M., Jayaro Y., Gamboa C., Reyes E., Barrientos V.	Mechanisms of Oryza sativa (Poaceae) resistance to Tagosodes orizicolus (Homoptera: Delphacidae) under greenhouse condition in Venezuela.	Rev. Biol. Trop.	60(1)	105-17	2012		
35552	22446930	Fukuoka S., Mizobuchi R., Saka N., Ivan S., Matsumoto T., Okuno K., Yano M.	A multiple gene complex on rice chromosome 4 is involved in durable resistance to rice blast.	Theor. Appl. Genet.	125(3)	551-9	2012		
35558	22146734	Kajikawa M., Fujibe T., Uraguchi S., Miwa K., Fujiwara T.	Expression of the Arabidopsis borate efflux transporter gene, AtBOR4, in rice affects the xylem loading of boron and tolerance to excess boron.	Biosci. Biotechnol. Biochem.	75(12)	2421-3	2011		
35568	22403871	Verma D., Joshi R., Shukla A., Kumar P.	Protocol for in vitro somatic embryogenesis and regeneration of rice (Oryza sativa L.).	Indian J. Exp. Biol.	49(12)	958-63	2011		
35571	22147755	Ying J.Z., Shan J.X., Gao J.P., Zhu M.Z., Shi M., Lin H.X.	Identification of Quantitative Trait Loci for Lipid Metabolism in Rice Seeds.	Mol Plant	5(4)	865-75	2012		
35572	22198727	Suji K.K., Biji K.R., Poornima R., Prince K.S., Amudha K., Kavitha S., Mankar S., Babu R.C.	Mapping QTLs for plant Phenology and Production Traits Using Indica Rice (Oryza sativa L.) Lines Adapted to Rainfed Environment.	Mol. Biotechnol.	52(2)	151-60	2012		
35575	22180466	Kusano M., Fukushima A., Fujita N., Okazaki Y., Kobayashi M., Oitome N.F., Ebana K., Saito K.	Deciphering starch quality of rice kernels using metabolite profiling and pedigree network analysis.	Mol Plant	5(2)	442-51	2012		
35577	22157756	Fenyk S., Campillo Ade S., Pohl E., Hussey P.J., Cann M.J.	A nucleotide phosphatase activity in the nucleotide binding domain of an orphan resistance protein from rice.	J. Biol. Chem.	287(6)	4023-32	2012		
35581	22212819	Shimizu T., Nakazono-Nagaoka E., Akita F., Wei T., Sasaya T., Omura T., Uehara-Ichiki T.	Hairpin RNA derived from the gene for Pns9, a viroplasm matrix protein of Rice gall dwarf virus, confers strong resistance to virus infection in transgenic rice plants.	J. Biotechnol.	157(3)	421-7	2012		
35583	22189496	Knief C., Delmotte N., Chaffron S., Stark M., Innerebner G., Wassmann R., von Mering C., Vorholt J.A.	Metaproteogenomic analysis of microbial communities in the phyllosphere and rhizosphere of rice.	ISME J	6(7)	1378-90	2012		
35585	22351022	Charng Y.C.	A one-time inducible transposon to create knockout mutants in rice.	Methods Mol. Biol.	847	369-77	2012		
35589	22389767	Fung W.T., Subramaniam G., Lee J., Loh H.M., Leung P.H.	Assessment of Extracts from Red Yeast Rice for Herb-Drug Interaction by in-vitro and in-vivo assays.	Sci Rep	2	298	2012		
35591	22348048	Meng Y., Shao C.	Large-scale identification of mirtrons in Arabidopsis and rice.	PLoS ONE	7(2)	e31163	2012		
35592	22313783	Imai T., Ohashi Y., Mitsuhara I., Seo S., Toshima H., Hasegawa M.	Identification of a degradation intermediate of the momilactone A rice phytoalexin by the rice blast fungus.	Biosci. Biotechnol. Biochem.	76(2)	414-6	2012		
35599	22215681	Wang Q., Hillwig M.L., Okada K., Yamazaki K., Wu Y., Swaminathan S., Yamane H., Peters R.J.	Characterization of CYP76M5-8 indicates metabolic plasticity within a plant biosynthetic gene cluster.	J. Biol. Chem.	287(9)	6159-68	2012	CYP76M4P,CYP76M10,CYP76M11P,CYP76M6,CYP76M13,CYP76L1,CYP76M1,CYP76M2,CYP76M5,CYP76M9,CYP76M14,CYP76M7	CYP76M4p,OsCYP76M10, OsCYP76-10, CYP76-10, OsCYP71T9, CYP71T9,CYP76M11p,OsCYP76M6, OsCYP76-5, CYP76-5, OsCYP71T5, CYP71T5,CYP76M13,OsCYP76L1, OsCYP76-12, CYP76-12, OsCYP71E4, CYP71E4,OsCYP76M1, OsCYP76-9, CYP76-9, OsCYP71T8, CYP71T8,OsCYP76M2, OsCYP76-11, CYP76-11,OsCYP76M5, OsCYP76-2, CYP76-2, OsCYP71T4, CYP71T4,CYP76M9, OsCYP76-7, CYP76-7, OsCYP71T7, CYP71T7,OsCYP76M14, OsCYP76-1, CYP76-1,OsCYP76M7, CYP76M10, OsCYP76M10, OsCYP76-4, CYP76-4
35600	22232242	Franco I., Castillo E., P?rez MD., Calvo M., S?nchez L.	Effects of hydrostatic high pressure on the structure and antibacterial activity of recombinant human lactoferrin from transgenic rice.	Biosci. Biotechnol. Biochem.	76(1)	53-9	2012		
35602	22363522	Singh A., Baranwal V., Shankar A., Kanwar P., Ranjan R., Yadav S., Pandey A., Kapoor S., Pandey G.K.	Rice Phospholipase A superfamily: organization, phylogenetic and expression analysis during abiotic stresses and development.	PLoS ONE	7(2)	e30947	2012		
35603	22347394	Xu H., Gao Y., Wang J.	Transcriptomic analysis of rice (Oryza sativa) developing embryos using the RNA-Seq technique.	PLoS ONE	7(2)	e30646	2012		
35606	22293194	Yang Z., Lu Q., Wen X., Chen F., Lu C.	Functional analysis of the rice rubisco activase promoter in transgenic Arabidopsis.	Biochem. Biophys. Res. Commun.	418(3)	565-70	2012		
35607	22229385	Matsuda F., Okazaki Y., Oikawa A., Kusano M., Nakabayashi R., Kikuchi J., Yonemaru J.I., Ebana K., Yano M., Saito K.	Dissection of genotype-phenotype associations in rice grains using metabolome quantitative trait loci analysis.	Plant J.	70(4)	624-36	2012		
35609	22267009	Abe A., Kosugi S., Yoshida K., Natsume S., Takagi H., Kanzaki H., Matsumura H., Yoshida K., Mitsuoka C., Tamiru M., Innan H., Cano L., Kamoun S., Terauchi R.	Genome sequencing reveals agronomically important loci in rice using MutMap.	Nat. Biotechnol.	30(2)	174-8	2012		
35611	22427867	Jia L., Yan W., Zhu C., Agrama H.A., Jackson A., Yeater K., Li X., Huang B., Hu B., McClung A., Wu D.	Allelic analysis of sheath blight resistance with association mapping in rice.	PLoS ONE	7(3)	e32703	2012		
35612	22383984	Li S., Wang S., Deng Q., Zheng A., Zhu J., Liu H., Wang L., Gao F., Zou T., Huang B., Cao X., Xu L., Yu C., Ai P., Li P.	Identification of genome-wide variations among three elite restorer lines for hybrid-rice.	PLoS ONE	7(2)	e30952	2012		
35613	22367872	Guiderdoni E., Gantet P.	Ac-Ds solutions for rice insertion mutagenesis.	Methods Mol. Biol.	859	177-87	2012		
35614	22232252	Kondo M., Yoshida Y., Miyata C., Fujiwara S., Nakajima Y., Hirai H., Takayama S., Isogai A., Che F.S.	Genetic organization of the hrp gene cluster in Acidovorax avenae strain N1141 and a novel effector protein that elicits immune responses in rice (Oryza sativa L.).	Biosci. Biotechnol. Biochem.	76(1)	129-38	2012		
35616	22291881	Qu Z., Li L., Luo J., Wang P., Yu S., Mou T., Zheng X., Hu Z.	QTL mapping of combining ability and heterosis of agronomic traits in rice backcross recombinant inbred lines and hybrid crosses.	PLoS ONE	7(1)	e28463	2012		
35617	22235904	Buschart A., Sachs S., Chen X., Herglotz J., Krause A., Reinhold-Hurek B.	Flagella mediate endophytic competence rather than act as MAMPS in rice-Azoarcus sp. strain BH72 interactions.	Mol. Plant Microbe Interact.	25(2)	191-9	2012		
35619	22297847	Kanjanaphachoat P., Wei B.Y., Lo S.F., Wang I.W., Wang C.S., Yu S.M., Yen M.L., Chiu S.H., Lai C.C., Chen L.J.	Serotonin accumulation in transgenic rice by over-expressing tryptophan decarboxlyase results in a dark brown phenotype and stunted growth.	Plant Mol. Biol.	78(6)	525-43	2012		
35621	22332867	Castillo E., P?rez MD., Franco I., Calvo M., S?nchez L.	Kinetic and thermodynamic parameters for heat denaturation of human recombinant lactoferrin from rice (1) (1) This article is part of a Special Issue entitled Lactoferrin and has undergone the Journal's usual peer review process.	Biochem. Cell Biol.	90(3)	389-96	2012		
35623	22329407	Fang L., Zhao F., Cong Y., Sang X., Du Q., Wang D., Li Y., Ling Y., Yang Z., He G.	Rolling-leaf14 is a 2OG-Fe (II) oxygenase family protein that modulates rice leaf rolling by affecting secondary cell wall formation in leaves.	Plant Biotechnol. J.	10(5)	524-32	2012	RL14	2-ODD24, Os2-ODD24, 2ODD24, Os2ODD24, OsRL14
35633	22383627	Sano N., Permana H., Kumada R., Shinozaki Y., Tanabata T., Yamada T., Hirasawa T., Kanekatsu M.	Proteomic Analysis of Embryonic Proteins Synthesized from Long-Lived mRNAs During Germination of Rice Seeds.	Plant Cell Physiol.	53(4)	687-98	2012		
35635	22382064	Liu C.H., Li X.Y., Zhang J.H., Lin D.Z., Dong Y.J.	[Characteristics and molecular mapping of a novel chlorophyll-deficient yellow-leaf mutant in rice].	Yi Chuan	34(2)	223-9	2012		
35636	22353560	Ye J.W., Gong Z.Y., Chen C.G., Mi H.L., Chen G.Y.	A mutation of OSOTP 51 leads to impairment of photosystem I complex assembly and serious photo-damage in rice.	J Integr Plant Biol	54(2)	87-98	2012		
35637	22350178	Liu G., Zhu H., Zhang G., Li L., Ye G.	Dynamic analysis of QTLs on tiller number in rice (Oryza sativa L.) with single segment substitution lines.	Theor. Appl. Genet.	125(1)	143-53	2012		
35648	22217248	Kim K., Choi D., Kim S.M., Kwak D.Y., Choi J., Lee S., Lee B.C., Hwang D., Hwang I.	A systems approach for identifying resistance factors to Rice stripe virus.	Mol. Plant Microbe Interact.	25(4)	534-45	2012		
35650	22403009	Bryant R., Proctor A., Hawkridge M., Jackson A., Yeater K., Counce P., Yan W., McClung A., Fjellstrom R.	Genetic variation and association mapping of silica concentration in rice hulls using a germplasm collection.	Genetica	139(11-12)	1383-98	2012		
35652	22325874	Chang I.F., Hsu J.L., Hsu P.H., Sheng W.A., Lai S.J., Lee C., Chen C.W., Hsu J.C., Wang S.Y., Wang L.Y., Chen C.C.	Comparative phosphoproteomic analysis of microsomal fractions of Arabidopsis thaliana and Oryza sativa subjected to high salinity.	Plant Sci.	185-186	131-42	2012		
35658	22738867	Hao Z., Wang L., Huang F., Tao R.	Expression of defense genes and antioxidant defense responses in rice resistance to neck blast at the preliminary heading stage and full heading stage.	Plant Physiol. Biochem.	57	222-30	2012		
35659	22530609	Oomen R.J., Benito B., Sentenac H., Rodr?guez-Navarro A., Tal?n M., V?ry AA., Domingo C.	HKT2;2/1, a K(+) -permeable transporter identified in a salt-tolerant rice cultivar through surveys of natural genetic polymorphism.	Plant J.	71(5)	750-62	2012		
35663	22698746	Zhang G.H., Wang H., Wang X.D., Feng M., Li H.M., Li S.Y.	[Isolation of the promoter region of HAK gene from Aeluropus littoralis and functional analysis in rice].	Yi Chuan	34(6)	742-8	2012		
35668	22607456	Grand X., Espinoza R., Michel C., Cros S., Chalvon V., Jacobs J., Morel J.B.	Identification of positive and negative regulators of disease resistance to rice blast fungus using constitutive gene expression patterns.	Plant Biotechnol. J.	10(7)	840-50	2012		
35669	22662107	Zhang L., Yu S., Zuo K., Luo L., Tang K.	Identification of gene modules associated with drought response in rice by network-based analysis.	PLoS ONE	7(5)	e33748	2012		
35670	22649533	Ziska L.H., Gealy D.R., Tomecek M.B., Jackson A.K., Black H.L.	Recent and projected increases in atmospheric CO2 concentration can enhance gene flow between wild and genetically altered rice (Oryza sativa).	PLoS ONE	7(5)	e37522	2012		
35673	22698753	Shah K., Nahakpam S.	Heat exposure alters the expression of SOD, POD, APX and CAT isozymes and mitigates low cadmium toxicity in seedlings of sensitive and tolerant rice cultivars.	Plant Physiol. Biochem.	57	106-13	2012		
35675	22754356	Cheng A., Ismail I., Osman M., Hashim H.	Simple and rapid molecular techniques for identification of amylose levels in rice varieties.	Int J Mol Sci	13(5)	6156-66	2012		
35676	22566008	Kaup R.M., Khayyal M.T., Verspohl E.J.	Antidiabetic Effects of a Standardized Egyptian Rice Bran Extract.	Phytother Res	27(2)	264-71	2012		
35679	22585409	Liu Q.	Novel miRNAs in the control of arsenite levels in rice.	Funct. Integr. Genomics	12(4)	649-58	2012	MIR6245	miR6245, osa-miR6245, osa-MIR6245
35684	22617629	Shrestha S., Brueck H., Asch F.	Chlorophyll index, photochemical reflectance index and chlorophyll fluorescence measurements of rice leaves supplied with different N levels.	J. Photochem. Photobiol. B, Biol.	113	7-13	2012		
35688	22593226	Vonholdt B.M., Takuno S., Gaut B.S.	Recent Retrotransposon Insertions Are Methylated and Phylogenetically Clustered in Japonica Rice (Oryza sativa spp. japonica).	Mol. Biol. Evol.	29(10)	3193-203	2012		
35689	22761959	Karan R., Deleon T., Biradar H., Subudhi P.K.	Salt stress induced variation in DNA methylation pattern and its influence on gene expression in contrasting rice genotypes.	PLoS ONE	7(6)	e40203	2012		
35690	22709342	Niroula R.K., Pucciariello C., Ho V.T., Novi G., Fukao T., Perata P.	SUB1A-dependent and -independent mechanisms are involved in the flooding tolerance of wild rice species.	Plant J.	72(2)	282-93	2012	SUB1C,SUB1A	Sub1C, OsSUB1C, OsERF#073, OsERF073, ERF073, OsERF73, ERF73, AP2/EREBP#122, AP2/EREBP122, SUB1B,Sub1A, Sub1A-1, Sub1A-2, OsSUB1A
35698	22711693	Ahamed A., Murai-Hatano M., Ishikawa-Sakurai J., Hayashi H., Kawamura Y., Uemura M.	Cold-Stress-Induced Acclimation in Rice is Mediated by Root-Specific Aquaporins.	Plant Cell Physiol.	53(8)	1445-56	2012		
35709	22843026	Wakasa Y., Ozawa K., Takaiwa F.	Agrobacterium-mediated co-transformation of rice using two selectable marker genes derived from rice genome components.	Plant Cell Rep.	31(11)	2075-84	2012		
35712	22856683	Park S., Lee D.E., Jang H., Byeon Y., Kim Y.S., Back K.	Melatonin-rich transgenic rice plants exhibit resistance to herbicide-induced oxidative stress.	J. Pineal Res.	54(3)	258-63	2013		
35713	22747776	Hummel A.W., Doyle E.L., Bogdanove A.J.	Addition of transcription activator-like effector binding sites to a pathogen strain-specific rice bacterial blight resistance gene makes it effective against additional strains and against bacterial leaf streak.	New Phytol.	195(4)	883-93	2012		
35714	22864386	Qiu X., Gong R., Tan Y., Yu S.	Mapping and characterization of the major quantitative trait locus qSS7 associated with increased length and decreased width of rice seeds.	Theor. Appl. Genet.	125(8)	1717-26	2012		
35716	22848789	Masuda H., Ishimaru Y., Aung M.S., Kobayashi T., Kakei Y., Takahashi M., Higuchi K., Nakanishi H., Nishizawa N.K.	Iron biofortification in rice by the introduction of multiple genes involved in iron nutrition.	Sci Rep	2	543	2012	SUT1,YSL2,GLUB1,GLB1	OsSUT1, OsSUT2,OsYSL2, Os-YSL2, OsYs6 ,GluB1, GluB1-A, GluB-1a, GluB-1, OsGluB1, GluB-1b, OsGluB-1b, GLUB1B,glb1(t)*, glb1(t), glb1, alpha-Glb, Glb-1, OsGlb1, Glb1, Glb, OsEnS-77
35717	22805093	Kanzaki H., Yoshida K., Saitoh H., Fujisaki K., Hirabuchi A., Allaux L., Fournier E., Tharreau D., Terauchi R.	Arms race co-evolution of Magnaporthe oryzae AVR-Pik and rice Pik genes driven by their physical interactions.	Plant J.			2012		
35720	22772587	Shao G., Wei X., Chen M., Tang S., Luo J., Jiao G., Xie L., Hu P.	Allelic variation for a candidate gene for GS7, responsible for grain shape in rice.	Theor. Appl. Genet.	125(6)	1303-12	2012	GS7	
35726	22811617	Liu Z., Li Y., Zhao J., Chen X., Jian G., Peng Y., Qi F.	Differentially expressed genes distributed over chromosomes and implicated in certain biological processes for site insertion genetically modified rice kemingdao.	Int. J. Biol. Sci.	8(7)	953-63	2012		
35729	22919301	Chen S., Zheng X., Wang D., Chen L., Xu C., Zhang X.	Effect of Long-Term Paddy-Upland Yearly Rotations on Rice (Oryza sativa) Yield, Soil Properties, and Bacteria Community Diversity.	ScientificWorldJournal	2012	279641	2012		
35730	22912788	Jia Y., Jia M.H., Wang X., Liu G.	Indica and japonica crosses resulting in linkage block and recombination suppression on rice chromosome 12.	PLoS ONE	7(8)	e43066	2012		
35735	22912843	Zhang T., Zhao X., Wang W., Pan Y., Huang L., Liu X., Zong Y., Zhu L., Yang D., Fu B.	Comparative transcriptome profiling of chilling stress responsiveness in two contrasting rice genotypes.	PLoS ONE	7(8)	e43274	2012		
35740	22919327	Gil de Los Santos D., Gil Turnes C., Rochedo Concei??o F.	Bioremediation of Parboiled Rice Effluent Supplemented with Biodiesel-Derived Glycerol Using Pichia pastoris X-33.	ScientificWorldJournal	2012	492925	2012		
35743	22911586	Proc?pio AR., Proc?pio RE., Pizzirani-Kleiner AA., Melo I.S.	Diversity of propanil-degrading bacteria isolated from rice rhizosphere and their potential for plant growth promotion.	Genet. Mol. Res.	11(3)	2021-34	2012		
35745	22687573	Wu J., Yu H., Dai H., Mei W., Huang X., Zhu S., Peng M.	Metabolite profiles of rice cultivars containing bacterial blight-resistant genes are distinctive from susceptible rice.	Acta Biochim. Biophys. Sin. (Shanghai)	44(8)	650-9	2012		
35747	22905132	Yang H.L., Liu Y.J., Wang C.L., Zeng Q.Y.	Molecular Evolution of Trehalose-6-phosphate synthase (TPS) Gene Family in Populus, Arabidopsis and Rice.	PLoS ONE	7(8)	e42438	2012		
35748	22870386	Kharabian-Masouleh A., Waters D.L., Reinke R.F., Ward R., Henry R.J.	SNP in starch biosynthesis genes associated with nutritional and functional properties of rice.	Sci Rep	2	557	2012		
35752	22562145	Luan J., Wang F., Li Y., Zhang B., Zhang J.	Mapping quantitative trait loci conferring resistance to rice black-streaked virus in maize (Zea mays L.).	Theor. Appl. Genet.	125(4)	781-91	2012		
35755	22616023	Schmidt R., Schippers J.H., Welker A., Mieulet D., Guiderdoni E., Mueller-Roeber B.	Transcription factor OsHsfC1b regulates salt tolerance and development in Oryza sativa ssp. japonica.	AoB Plants	2012	pls011	2012	HSFC1A,HSFC1B	HSfC1a, OsHsfC1a, OsHsf-02, OsHSF2, HSF2, rHsf13, HSF02, HSF13,OsHsfC1b, HsfC1b, HSF03, OsHsf-03, OsHSF3, HSF3, HSF11,  rHsf11
35757	22509807	Gong C.Y., Li Q., Yu H.T., Wang Z., Wang T.	Proteomics insight into the biological safety of transgenic modification of rice as compared with conventional genetic breeding and spontaneous genotypic variation.	J. Proteome Res.	11(5)	3019-29	2012		
35758	22659522	Liu J., Li W., Ning Y., Shirsekar G., Wang X., Dai L., Wang Z., Liu W., Wang G.L.	The U-box E3 ligase SPL11/PUB13 Is a Convergence Point of Defense and Flowering Signaling in Plants.	Plant Physiol.	160(1)	28-37	2012	HD3A,SPIN1,_,SE1,RAC1,_,SPL11	Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,Spin1, OsSPIN1, OsKH16, KH16,SPIN6, Spin6, SIP11 ,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, OsHd1,  Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,OsRAC1, OsRac1, Os Rac1, Rac1, Os-Rac1,RBS1, Rbs1,spl11, spl11*, OsPUB11, PUB11,  OsPUB11/SPL11, PUB11/SPL11
35759	22566494	Park S.H., Chung P.J., Juntawong P., Bailey-Serres J., Kim Y.S., Jung H., Bang S.W., Kim Y.K., Do Choi Y., Kim J.K.	Posttranscriptional Control of Photosynthetic mRNA Decay under Stress Conditions Requires 3' and 5' Untranslated Regions and Correlates with Differential Polysome Association in Rice.	Plant Physiol.	159(3)	1111-24	2012	F2KP2,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,CABE,PHO1,PKPBETA2,LHCB3,UCL35,UCL4,_,ENODL4,ENODL12,_,TCD9,_,YGDL1,_,ATASE3,_,PFPB,_,PSAN,SSIIB,CBSSIS1,YGL6 ,PSAK,PSBX,PFK6,PPGM,CP26,PSAD,PSAA,RBCS3,RCA,PSBY,CP24,FKII,CIN5,CAB1R,GBSSII,_,RBCS,ABC1	OsF2KP2,PsbP,PsbP,,,,,,,,,,,,,,,,,CabE, OsCabE, OsLhcb7, Lhcb7,Pho1, OsPho1, OsPHOL, PHOL, OsPHOI, PHOI,OsPKpb2, PKpb2, OsPKpbeta2, PKpbeta2, OsPK9, PK9,Lhcb3, OsLhcb3,OsUCL35,OsUCL4,OsTK, TK,OsENODL4,OsENODL12,,OsCPn60alpha3, OsCPn60a3,OsEno5, Eno5,OsAld-Y, Ald-Y, YGDL-1 ,PsbP,Atase3, OsATASE3,,OsPFPB, OsPFP-B, PFP-B, PFPbeta,FNR, PetH, OsFNR,psaN, OspsaN, PN, OsPN,OsSSIIb, OsSSII-2, SSII-2, SS2, OsSSSIIb, SS2b,OsCBSSIS1,CSP41b, LGL1,PsaK, OsPSAK,PsbX,OsPFK06, PFK06,OspPGM, pPGM ,ASCAB9-A, OsCP26, Lhcb5, LHCB5, OsLHCB5,PsaD, OsPsaD,PsaA,RbcS3, OsRBCS3, OsRbcS3, rbcS ,OsRcaII, rca, rcaII, OsRcaI, RCAI, ME137, OsRCA1, RCA, RCAalpha, OsRCAalpha, OsRCAbeta,PsbY, OsPSBY,Lhcb6, OsCP24, OsLhcb6,OsFKII, OsFK1, FK1, FRK-2, OsFRK-2, FRK2, OsFRK2,OsCIN4, OsCIN5, CIN4, CWIN4, OsCWIN4,cab1R, LHCP, CAB, OsLhcb1, Lhcb1, Cab1, OsCAB1, Lhcb1b, OsLhcb1b, CAB2R,GBSS2, OsGBSSII, OsGBSS2,OsLFNR2, LFNR2, FNR, LFNR1, Os-LFNR1, OsLFNR1, PetH-1,rbcS, OsRbcS, RBCS-C, RbcS2, OsRBCS2, RbcS1, OsRbcS2, OsrbcS1,OsABC1, SPL32, OsSPL32, OsGLU, OsFd-GOGAT, Fd-GOGAT, ABC1/ OsFd-GOGAT 
35767	22522577	Chen Y.A., Chi W.C., Huang T.L., Lin C.Y., Quynh Nguyeh TT., Hsiung Y.C., Chia L.C., Huang H.J.	Mercury-induced biochemical and proteomic changes in rice roots.	Plant Physiol. Biochem.	55	23-32	2012		
35769	22705591	Bahuguna R.N., Joshi R., Shukla A., Pandey M., Kumar J.	Thiamine primed defense provides reliable alternative to systemic fungicide carbendazim against sheath blight disease in rice (Oryza sativa L.).	Plant Physiol. Biochem.	57	159-67	2012		
35776	22570626	Zhang C., Xu Y., Guo S., Zhu J., Huan Q., Liu H., Wang L., Luo G., Wang X., Chong K.	Dynamics of brassinosteroid response modulated by negative regulator LIC in rice.	PLoS Genet.	8(4)	e1002686	2012	BZR1,SKETHA, LIC,GSK1,IBH1,ILI1	OsBZR1, Os BZR1, OsBES1-6, BES1-6,GSK4, Os GSK4, OsGSK4, OsSKetha, OsSKETHA, OsSK24/OsGSK8, OsSK24, OsGSK8, SK24, GSK8,OsC3H46, C3H46, OsLIC, OsFLA6, FLA6,Os GSK1, OsGSK1, OsSK21/OsGSK1, OsSK21, SK21,Os IBH1, OsIBH1, OsbHLH175, bHLH175,OsbHLH154, bHLH154, OsILI1
35777	22606331	Liu Z., Zhao J., Li Y., Zhang W., Jian G., Peng Y., Qi F.	Non-uniform distribution pattern for differentially expressed genes of transgenic rice Huahui 1 at different developmental stages and environments.	PLoS ONE	7(5)	e37078	2012		
35779	22609438	Matsumura H., Mizohata E., Ishida H., Kogami A., Ueno T., Makino A., Inoue T., Yokota A., Mae T., Kai Y.	Crystal structure of rice rubisco and implications for activation induced by positive effectors NADPH and 6-phosphogluconate.	J. Mol. Biol.	422(1)	75-86	2012		
35787	22715111	Xiang J.J., Zhang G.H., Qian Q., Xue H.W.	SEMI-ROLLED LEAF1 Encodes a Putative Glycosylphosphatidylinositol-Anchored Protein and Modulates Rice leaf rolling by Regulating the Formation of Bulliform Cells.	Plant Physiol.	159(4)	1488-500	2012	VHA-A2,_,GLUP6,VSR7,_,_,_,_,_,VHA-B,VHA-C,TIP4;2,SRL1,VHA-D,CHALK5	OsVHA-A2, VHAA2,,glup6(t), Glup6(t), Glup6, OsVPS9A, VPS9a, GPA2/VPS9a, GPA2, GLUP6/GEF,OsVSR7,SKD1,,,,OVP1,OsVHA-B, VHA-B1, OsVHA-B1,OsVHA-C,OsTIP4;2, TIP4.2, TIP4-2,OsSRL1, CLD1/SRL1, CLD1, OsCLD1, OsSPARK9, SPARK9,OsVHA-D,Chalk5, OsChalk5
35788	22751322	Yadav D.K., Islam S.M., Tuteja N.	Rice heterotrimeric G-protein Gamma subunits (RGG1 and RGG2) are differentially regulated under abiotic stress.	Plant Signal Behav	7(7)	733-40	2012	RGG1,RGG2	OsRGG1,OsRGG2
35790	22670578	Zhang L., Zhao Y.L., Gao L.F., Zhao G.Y., Zhou R.H., Zhang B.S., Jia J.Z.	TaCKX6-D1, the ortholog of rice OsCKX2, is associated with grain weight in hexaploid wheat.	New Phytol.	195(3)	574-84	2012		
35791	22751999	Kwon T., Lee J.H., Park S.K., Hwang U.H., Cho J.H., Kwak D.Y., Youn Y.N., Yeo U.S., Song Y.C., Nam J., Kang H.W., Nam M.H., Park D.S.	Fine mapping and identification of candidate rice genes associated with qSTV11 ( SG ), a major QTL for rice stripe disease resistance.	Theor. Appl. Genet.	125(5)	1033-46	2012		
35794	22805217	Tan C., Weng X.Y., Yan W.H., Bai X.F., Xing Y.Z.	[Ghd7, a pleiotropic gene controlling flag leaf area in rice].	Yi Chuan	34(7)	901-6	2012		
35796	22701725	Liu Y., Zhou T., Crowley D., Li L., Liu D., Zheng J., Yu X., Pan G., Hussain Q., Zhang X., Zheng J.	Decline in Topsoil Microbial Quotient, Fungal Abundance and C Utilization Efficiency of Rice Paddies under Heavy Metal Pollution across South China.	PLoS ONE	7(6)	e38858	2012		
35800	22685088	Kuwagata T., Ishikawa-Sakurai J., Hayashi H., Nagasuga K., Fukushi K., Ahamed A., Takasugi K., Katsuhara M., Murai-Hatano M.	Influence of low air-humidity and low root-temperature on water-uptake, growth and aquaporin expressions in rice plants.	Plant Cell Physiol.	53(8)	1418-31	2012		
35807	22672582	Bai H., Lan J.P., Gan Q., Wang X.Y., Hou M.M., Cao Y.H., Li L.Y., Liu L.J., Hao Y.J., Yin C.C., Wu L., Zhu L.H., Liu G.Z.	Identification and expression analysis of components involved in rice Xa21-mediated disease resistance signalling.	Plant Biol (Stuttg)	14(6)	914-22	2012		
35810	22660631	Sun J., Liu D., Wang J.Y., Ma D.R., Tang L., Gao H., Xu Z.J., Chen W.F.	The contribution of intersubspecific hybridization to the breeding of super-high-yielding japonica rice in northeast China.	Theor. Appl. Genet.	125(6)	1149-57	2012		
35811	22734689	Goel A., Gaur V.S., Arora S., Gupta S., Kumar A.	In silico analysis of expression data for identification of genes involved in spatial accumulation of calcium in developing seeds of rice.	OMICS	16(7-8)	402-13	2012		
35813	22693960	Zhang H., Ni L., Liu Y., Wang Y., Zhang A., Tan M., Jiang M.	The C(2) H(2) -type Zinc Finger Protein ZFP182 is Involved in Abscisic Acid-Induced Antioxidant Defense in Rice(F).	J Integr Plant Biol	54(7)	500-10	2012		
35817	22829719	Reddy V.S., Kumar Y.N., Raghavendra A., Sowjenya G., Kumar S., Ramyasree G., Reddy G.R.	In silico model of DSF synthase RpfF protein from Xanthomonas oryzae pv. Oryzae: a novel target for bacterial blight of rice disease.	Bioinformation	8(11)	504-7	2012		
35819	22676236	Arenhart R.A., DE Lima JC., Pedron M., Carvalho F.E., DA Silveira JA., Rosa S.B., Caverzan A., Andrade C.M., Sch?nemann M., Margis R., Margis-Pinheiro M.	Involvement of ASR genes in aluminium tolerance mechanisms in rice.	Plant Cell Environ.	36(1)	52-67	2013	ASR5,RBLS2	OsASR5, Asr5, Asr1, OsASR1, OsASR2, ASR2,ASR1, OsAsr1, OsASR3, ASR3, Asr3, OsRBLS2
35820	22686401	Nandy S., Srivastava V.	Marker-free site-specific gene integration in rice based on the use of two recombination systems.	Plant Biotechnol. J.	10(8)	904-12	2012		
35821	22678666	Wang Z., Cheng J., Chen Z., Huang J., Bao Y., Wang J., Zhang H.	Identification of QTLs with main, epistatic and QTL X environment interaction effects for salt tolerance in rice seedlings under different salinity conditions.	Theor. Appl. Genet.	125(4)	807-15	2012		
35826	22835979	Ying J.Z., Gao J.P., Shan J.X., Zhu M.Z., Shi M., Lin H.X.	Dissecting the Genetic Basis of Extremely Large grain shape in Rice Cultivar 'JZ1560'.	J Genet Genomics	39(7)	325-33	2012		
35827	22747551	Toda T., Fujii S., Noguchi K., Kazama T., Toriyama K.	Rice MPR25 encodes a pentatricopeptide repeat protein and is essential for RNA editing of nad5 transcripts in mitochondria.	Plant J.	72(3)	450-60	2012	NDB3,NDC1,NDB1,AOX1C,NDA1,NDA,MPR25,AOX1A	OsNDB3,OsNDC1,OsNDB1,OsAOX1c,OsNDA1,OsNDA, NDB3, OsNDB3, OsNDB2, NDB2,OsMPR25,Ao1-1, AOX1a, OsAOX1a, AOX 1a
35828	22773759	Sassi A., Mieulet D., Khan I., Moreau B., Gaillard I., Sentenac H., Very A.A.	The rice monovalent cation transporter OsHKT2;4: revisited ionic selectivity.	Plant Physiol.	160(1)	498-510	2012		
35838	22892331	Chen D.H., Chyan C.L., Jiang P.L., Chen C.S., Tzen J.T.	The same oleosin isoforms are present in oil bodies of rice embryo and aleurone layer while caleosin exists only in those of the embryo.	Plant Physiol. Biochem.	60C	18-24	2012		
35839	22730086	Liu C.W., Hsu Y.K., Cheng Y.H., Yen H.C., Wu Y.P., Wang C.S., Lai C.C.	Proteomic analysis of salt-responsive ubiquitin-related proteins in rice roots.	Rapid Commun. Mass Spectrom.	26(15)	1649-60	2012		
35840	22884095	Peng Y., Zhang Y., Lv J., Zhang J., Li P., Shi X., Wang Y., Zhang H., He Z., Teng S.	Characterization and Fine Mapping of a Novel Rice Albino Mutant low temperature albino 1.	J Genet Genomics	39(8)	385-96	2012		
35842	22882653	Yang L., Hirose S., Takahashi H., Kawakatsu T., Takaiwa F.	Recombinant protein yield in rice seed is enhanced by specific suppression of endogenous seed proteins at the same deposit site.	Plant Biotechnol. J.	10(9)	1035-45	2012		
35843	22869603	Shi B., Ni L., Zhang A., Cao J., Zhang H., Qin T., Tan M., Zhang J., Jiang M.	OsDMI3 Is a Novel Component of Abscisic Acid Signaling in the Induction of Antioxidant Defense in Leaves of Rice.	Mol Plant	5(6)	1359-74	2012	DMI3	OsDMI3, OsCCaMK1, OsCCaMK, OsCCAMK, CCAMK
35844	22906634	Yang L., Chen J.H., Xu T., Zhou A.S., Yang H.K.	Rice protein improves oxidative stress by regulating glutathione metabolism and attenuating oxidative damage to lipids and proteins in rats.	Life Sci.	91(11-12)	389-94	2012		
35845	22876968	Marathi B., Guleria S., Mohapatra T., Parsad R., Mariappan N., Kurungara V.K., Atwal S.S., Prabhu K.V., Singh N.K., Singh A.K.	QTL analysis of novel genomic regions associated with yield and yield related traits in new plant type based recombinant inbred lines of rice (Oryza sativa L.).	BMC Plant Biol.	12(1)	137	2012		
35847	22903596	Tien Y.C., Chuankhayan P., Huang Y.C., Chen C.D., Alikhajeh J., Chang S.L., Chen C.J.	Crystal structures of rice (Oryza sativa) glyceraldehyde-3-phosphate dehydrogenase complexes with NAD and sulfate suggest involvement of Phe37 in NAD binding for catalysis.	Plant Mol. Biol.	80(4-5)	389-403	2012		
35848	22917912	Yang D.W., Lu L.B., Chen C.P., Zeng M.J., Zheng X.H., Ye N., Liu C.D., Ye X.F.	[Morphological characteristics and gene mapping of a palea degradation(PD2) mutant in rice].	Yi Chuan	34(8)	1064-72	2012		
35854	22794919	Crofts N., Abe K., Aihara S., Itoh R., Nakamura Y., Itoh K., Fujita N.	Lack of starch synthase IIIa and high expression of granule-bound starch synthase I synergistically increase the apparent amylose content in rice endosperm.	Plant Sci.	193-194	62-9	2012		
35855	22585748	Edwards J.M., Roberts T.H., Atwell B.J.	Quantifying ATP turnover in anoxic coleoptiles of rice (Oryza sativa) demonstrates preferential allocation of energy to protein synthesis.	J. Exp. Bot.	63(12)	4389-402	2012		
35858	22798060	Peng X., Hu Y., Tang X., Zhou P., Deng X., Wang H., Guo Z.	Constitutive expression of rice WRKY30 gene increases the endogenous jasmonic acid accumulation, PR gene expression and resistance to fungal pathogens in rice.	Planta	236(5)	1485-98	2012		
35859	22811433	Suzuki Y., Makino A.	Availability of Rubisco Small Subunit Up-Regulates the Transcript Levels of Large Subunit for Stoichiometric Assembly of Its Holoenzyme in Rice.	Plant Physiol.	160(1)	533-40	2012		
35862	22827940	Sahoo R.K., Gill S.S., Tuteja N.	pea DNA helicase 45 promotes salinity stress tolerance in IR64 rice with improved yield.	Plant Signal Behav	7(8)	1042-6	2012		
35863	22829206	Xu S., Wang L., Zhang B., Han B., Xie Y., Yang J., Zhong W., Chen H., Wang R., Wang N., Cui W., Shen W.	RNAi knockdown of rice SE5 gene is sensitive to the herbicide methyl viologen by the down-regulation of antioxidant defense.	Plant Mol. Biol.	80(2)	219-35	2012		
35864	22846333	Sakamoto T., Ohnishi T., Fujioka S., Watanabe B., Mizutani M.	Rice CYP90D2 and CYP90D3 catalyze C-23 hydroxylation of brassinosteroids in vitro.	Plant Physiol. Biochem.	58C	220-226	2012		
35865	22848448	Guan Q., Takano T., Liu S.	Genetic Transformation and Analysis of Rice OsAPx2 Gene in Medicago sativa.	PLoS ONE	7(7)	e41233	2012	APX2	OsAPX2, OsAPx02, APXb, OsAPx2, OSAPX2, APx2, cAPX, OsAPX1, APX1
35867	22771800	Chaen K., Noguchi J., Omori T., Kakuta Y., Kimura M.	Crystal structure of the rice branching enzyme I (BEI) in complex with maltopentaose.	Biochem. Biophys. Res. Commun.	424(3)	508-11	2012		
35868	22646149	Huang P., Molina J., Flowers J.M., Rubinstein S., Jackson S.A., Purugganan M.D., Schaal B.A.	Phylogeography of Asian wild rice, Oryza rufipogon: a genome-wide view.	Mol. Ecol.	21(18)	4593-604	2012		
35871	22570632	Fernandez J., Wright J.D., Hartline D., Quispe C.F., Madayiputhiya N., Wilson R.A.	Principles of carbon catabolite repression in the rice blast fungus: Tps1, Nmr1-3, and a MATE-family pump regulate glucose metabolism during infection.	PLoS Genet.	8(5)	e1002673	2012		
35881	22614271	Ma J., Guan S.C., Zhang Z., Wang P.W.	Single- and double-SSR primer combined analyses in rice.	Genet. Mol. Res.	11(2)	1032-8	2012		
35883	22659434	Yang Z.M., Xie X.F., Huang X.B., Wang F.Q., Tong Z.J., Duan Y.L., Lan T., Wu W.R.	[Mapping of Sanming dominant genic male sterility gene in rice].	Yi Chuan	34(5)	615-20	2012		
35885	22610311	Rey A.A., Hocher A., Kwan A.H., Sunde M.	Backbone and sidechain (1)H, (13)C and (15)N chemical shift assignments of the hydrophobin MPG1 from the rice blast fungus Magnaporthe oryzae.	Biomol NMR Assign	7(1)	109-12	2013		
35886	22696296	Wang C.J., Nan G.L., Kelliher T., Timofejeva L., Vernoud V., Golubovskaya I.N., Harper L., Egger R., Walbot V., Cande W.Z.	Maize multiple archesporial cells 1 (MAC1), an ortholog of rice TDL1A, modulates cell proliferation and identity in early anther development.	Development	139(14)	2594-603	2012		
35889	22713349	Sani I.M., Iqbal S., Chan K.W., Ismail M.	Effect of Acid and Base Catalyzed Hydrolysis on the Yield of Phenolics and Antioxidant Activity of Extracts from Germinated Brown Rice (GBR).	Molecules	17(6)	7584-94	2012		
35891	22815975	Yang X., Wang F., Su J., Lu B.R.	Limited Fitness Advantages of Crop-Weed Hybrid Progeny Containing Insect-Resistant Transgenes (Bt/CpTI) in Transgenic Rice Field.	PLoS ONE	7(7)	e41220	2012		
35893	22763462	Zhang G.Y., Liu R.R., Xu G., Zhang P., Li Y., Tang K.X., Liang G.H., Liu Q.Q.	Increased alpha-tocotrienol content in seeds of transgenic rice overexpressing Arabidopsis gamma-tocopherol methyltransferase.	Transgenic Res.	22(1)	89-99	2013		
35895	22786641	Wu S.F., Yao Y., Huang J., Ye G.Y.	Characterization of a beta-adrenergic-like octopamine receptor from the rice stem borer (Chilo suppressalis).	J. Exp. Biol.	215(Pt 15)	2646-52	2012		
35899	22791138	Kov?cs G., S?gi L., Jacon G., Arinaitwe G., Busogoro J.P., Thiry E., Strosse H., Swennen R., Remy S.	Expression of a rice chitinase gene in transgenic banana ('Gros Michel', AAA genome group) confers resistance to black leaf streak disease.	Transgenic Res.	22(1)	117-30	2013		
35904	22624059	Chen M., Zeng H., Qiu D., Guo L., Yang X., Shi H., Zhou T., Zhao J.	Purification and characterization of a novel hypersensitive response-inducing elicitor from Magnaporthe oryzae that triggers defense response in rice.	PLoS ONE	7(5)	e37654	2012	PR10A,EDS1,NH1,PR1A,_,PAL1,AOS2	PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsEDS1,OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2, DLN5, OsDLN5,  OsBTBA1, BTBA1,OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1, OsPR1b, PR1alpha, OsPR1alpha,Lox2:Os:1, OsLOX9, LOX9, OsLOX8, LOX8, OsLOX2, LOX2, OsRLL, OsHI-LOX, HI-LOX, RLL2 LOX, RLL2, Lox2osPil, OsLOX2;1, LOX2;1, OsLOX1, OsLOX7, LOX7,OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6,OsAOS2, CYP74A2, OsAOS, OsAOS1
35907	22738964	Zheng S., Sanada H., Dohi H., Hirai S., Egashira Y.	Suppressive Effect of Modified Arabinoxylan from Rice Bran (MGN-3) on <small>D</small>-Galactosamine-Induced IL-18 Expression and Hepatitis in Rats.	Biosci. Biotechnol. Biochem.	76(5)	942-6	2012		
35910	22558413	Bhadauria V., Banniza S., Vandenberg A., Selvaraj G., Wei Y.	Peroxisomal alanine: glyoxylate aminotransferase AGT1 is indispensable for appressorium function of the rice blast pathogen, Magnaporthe oryzae.	PLoS ONE	7(4)	e36266	2012		
35919	22666467	Ma W., Zhang Z., Peng C., Wang X., Li F., Lin Y.	Exploring the midgut transcriptome and brush border membrane vesicle proteome of the rice stem borer, Chilo suppressalis (Walker).	PLoS ONE	7(5)	e38151	2012		
35924	22570148	Kim S.R., An G.	Bacterial transposons are co-transferred with T-DNA to rice chromosomes during Agrobacterium-mediated transformation.	Mol. Cells	33(6)	583-9	2012		
35926	22514089	Eun C.H., Takagi K., Park K.I., Maekawa M., Iida S., Tsugane K.	Activation and epigenetic regulation of DNA transposon nDart1 in rice.	Plant Cell Physiol.	53(5)	857-68	2012		
35932	22567170	Wang J., Li Y., Han Z., Zhu Y., Xie Z., Wang J., Liu Y., Li X.	Molecular characterization of a ryanodine receptor gene in the rice leaffolder, Cnaphalocrocis medinalis (Guen?e).	PLoS ONE	7(5)	e36623	2012		
35933	22558400	Xu Y., Zhou W., Zhou Y., Wu J., Zhou X.	Transcriptome and comparative gene expression analysis of Sogatella furcifera (Horv?th) in response to southern rice black-streaked dwarf virus.	PLoS ONE	7(4)	e36238	2012		
35934	22526504	Rose M.T., Rose T.J., Pariasca-Tanaka J., Yoshihashi T., Neuweger H., Goesmann A., Frei M., Wissuwa M.	Root metabolic response of rice (Oryza sativa L.) genotypes with contrasting tolerance to zinc deficiency and bicarbonate excess.	Planta	236(4)	959-73	2012		
35937	22721355	Lan Y., Su N., Shen Y., Zhang R., Wu F., Cheng Z., Wang J., Zhang X., Guo X., Lei C., Wang J., Jiang L., Mao L., Wan J.	Identification of novel MiRNAs and MiRNA expression profiling during grain development in indica rice.	BMC Genomics	13(1)	264	2012		
35939	22837707	Chan K.W., Khong N.M., Iqbal S., Ismail M.	Simulated Gastrointestinal pH Condition Improves Antioxidant Properties of Wheat and Rice Flours.	Int J Mol Sci	13(6)	7496-507	2012		
35942	22751304	Tanaka W., Toriba T., Ohomori Y., Hirano H.Y.	Formation of two florets within a single spikelet in the rice TONGARI-BOUSHI1 mutant.	Plant Signal Behav	7(7)	793-5	2012		
35943	22747959	Park S., Byeon Y., Kim Y.S., Back K.	Kinetic analysis of purified recombinant rice N-acetylserotonin methyltransferase and peak melatonin production in etiolated rice shoots.	J. Pineal Res.	54(2)	139-44	2013		
35945	22698279	Tan H., Liang W., Hu J., Zhang D.	MTR1 Encodes a Secretory fasciclin glycoprotein Required for Male Reproductive Development in Rice.	Dev. Cell	22(6)	1127-37	2012	MTR1,C6,CYP704B2,UDT1,RAFTIN1,TDR	OsMTR1,Osc6, Osg6B, OsG6B, OsLTPG25, OsLTPg25, OsLtpVII.1, Os C6,OsCYP704B2,Udt1, bHLH164, OsUDT1, OsbHLH164 ,OsRAFTIN1, BURP13, OsBURP13, Os RAFTIN1,tdr, OsbHLH005, bHLH005, OsbHLH5, bhlh5, TDR1, OsTDR, OsTDR1, OsMYC5, MYC5
35951	22684614	Khurana R., Kapoor S., Tyagi A.K.	Spatial and temporal activity of upstream regulatory regions of rice anther-specific genes in transgenic rice and Arabidopsis.	Transgenic Res.	22(1)	31-46	2013		
35952	22684798	Sarma K., Dehury B., Sahu J., Sarmah R., Sahoo S., Sahu M., Sen P., Modi M.K., Barooah M.	A comparative proteomic approach to analyse structure, function and evolution of rice chitinases: a step towards increasing plant fungal resistance.	J Mol Model	18(11)	4761-80	2012		
35954	22736145	Huy N.X., Kim S.H., Yang M.S., Kim T.G.	Immunogenicity of a neutralizing epitope from porcine epidemic diarrhea virus: M cell targeting ligand fusion protein expressed in transgenic rice calli.	Plant Cell Rep.	31(10)	1933-42	2012		
35957	22761858	Zhang Z., Lu Y., Zhai L., Deng R., Jiang J., Li Y., He Z., Peng X.	Glycolate oxidase Isozymes Are Coordinately Controlled by GLO1 and GLO4 in Rice.	PLoS ONE	7(6)	e39658	2012	GLO2,GLO3,GLO4,GLO5,GLO1,GLO6	GLO2, OsGLO2,GLO3, OsGLO3,GLO5, OsGLO5, OsGLO4, ,GLO4, OsGLO4, OsGLO5,GLO1, OsGLO1,GLO6, OsGLO6, OsGOX6, GOX6
35960	22730241	Li Y., Zhang Z., Nie Y., Zhang L., Wang Z.	Proteomic analysis of salicylic acid induced resistance to magnaporthe oryzae in susceptible and resistant rice.	Proteomics	12(14)	2340-54	2012		
35972	22763092	Vijayakumar K.R., Gowda L.R.	Temporal expression profiling of lipase during germination and rice caryopsis development.	Plant Physiol. Biochem.	57	245-53	2012		
35974	22750992	Singh I., Shah K.	In silico study of interaction between rice proteins enhanced disease susceptibility 1 and phytoalexin deficient 4, the regulators of salicylic acid signalling pathway.	J. Biosci.	37(3)	563-71	2012		
35976	22847900	Yokotani N., Ichikawa T., Kondou Y., Iwabuchi M., Matsui M., Hirochika H., Oda K.	Role of the rice transcription factor JAmyb in abiotic stress response.	J. Plant Res.	126(1)	131-9	2013		
35983	22798058	Yu C., Han F., Zhang J., Birchler J., Peterson T.	A transgenic system for generation of transposon Ac/Ds-induced chromosome rearrangements in rice.	Theor. Appl. Genet.	125(7)	1449-62	2012		
35984	22841976	Hasegawa H., Rahman M.M., Kadohashi K., Takasugi Y., Tate Y., Maki T., Rahman M.A.	Significance of the concentration of chelating ligands on Fe(3+)-solubility, bioavailability, and uptake in rice plant.	Plant Physiol. Biochem.	58C	205-211	2012		
35985	22852874	Berendzen K.W., Weiste C., Wanke D., Kilian J., Harter K., Dr?ge-Laser W.	Bioinformatic cis-element analyses performed in Arabidopsis and rice disclose bZIP- and MYB-related binding sites as potential AuxRE-coupling elements in auxin-mediated transcription.	BMC Plant Biol.	12(1)	125	2012		
35986	22815860	Mittal D., Madhyastha D.A., Grover A.	Genome-Wide Transcriptional Profiles during Temperature and oxidative stress Reveal Coordinated Expression Patterns and Overlapping Regulons in Rice.	PLoS ONE	7(7)	e40899	2012		
35988	22915747	Kusumi K., Hirotsuka S., Kumamaru T., Iba K.	Increased leaf photosynthesis caused by elevated stomatal conductance in a rice mutant deficient in slac1, a guard cell anion channel protein.	J. Exp. Bot.	63(15)	5635-44	2012	_,_,_,_,_,_,_,_,SLAC1,STOMAGEN	SLAC,SLAC,SLAC, OsSLAC,SLAC,HT1,SLAC,SLAC,SLAC,OsSLAC1, OsSLAH1, SLAH1,OsSTOMAGEN, OsEPFL9, EPFL9, OsEPFL10, EPFL10
35989	22900059	Oh Y., Franck W.L., Han S.O., Shows A., Gokce E., Muddiman D.C., Dean R.A.	Polyubiquitin Is Required for Growth, Development and Pathogenicity in the Rice Blast Fungus Magnaporthe oryzae.	PLoS ONE	7(8)	e42868	2012		
35996	22913653	Hong L., Tang D., Shen Y., Hu Q., Wang K., Li M., Lu T., Cheng Z.	MIL2 (MICROSPORELESS2) regulates early cell differentiation in the rice anther.	New Phytol.	196(2)	402-13	2012		
36013	22645600	Doroshenk K.A., Crofts A.J., Morris R.T., Wyrick J.J., Okita T.W.	RiceRBP: A Resource for Experimentally Identified RNA Binding Proteins in Oryza sativa.	Front Plant Sci	3	90	2012		
36020	22610504	Duan Y., Zhai C., Li H., Li J., Mei W., Gui H., Ni D., Song F., Li L., Zhang W., Yang J.	An efficient and high-throughput protocol for Agrobacterium-mediated transformation based on phosphomannose isomerase positive selection in Japonica rice (Oryza sativa L.).	Plant Cell Rep.	31(9)	1611-24	2012		
36021	22640001	Park S., Back K.	Melatonin promotes seminal root elongation and root growth in transgenic rice after germination.	J. Pineal Res.	53(4)	385-9	2012		
36023	22851681	Jiang S., Zhang X., Zhang F., Xu Z., Chen W., Li Y.	Identification and Fine Mapping of qCTH4, a Quantitative Trait Loci Controlling the chlorophyll content from Tillering to Heading in Rice(Oryza sativa L.).	J. Hered.	103(5)	720-6	2012		
36030	22811434	Kudo T., Makita N., Kojima M., Tokunaga H., Sakakibara H.	Cytokinin Activity of cis-Zeatin and Phenotypic Alterations Induced by Over-expression of Putative cis-Zeatin-O-glucosyltransferase in Rice.	Plant Physiol.	160(1)	319-31	2012	CZOGT2,CZOGT1,CZOGT3	OscZOGT2, cZOGT2,OscZOGT1, cZOGT1,OscZOGT3, cZOGT3, UCIP7, OsUCIP7
36032	22768325	Ke L., Liu R., Chu B., Yu X., Sun J., Jones B., Pan G., Cheng X., Wang H., Zhu S., Sun Y.	Cell suspension culture-mediated incorporation of the rice bel gene into transgenic cotton.	PLoS ONE	7(7)	e39974	2012	BEL	bel, bel-a(8077S), bel-b(=bsl, Norin8m), CYP81A6, OsCYP81A6, OsCYP81Q32, CYP81Q32, OsCYP71U8, CYP71U8
36034	22836167	Kim D.S., Lee K.J., Yim W.C., Kim J.B., Ha B.K., Kim S.H., Kang S.Y.	Transcriptional network analysis of the tryptophan-accumulating rice mutant during grain filling.	Mol. Genet. Genomics	287(9)	699-709	2012		
36038	22996677	Rana R.M., Dong S., Tang H., Ahmad F., Zhang H.	Functional analysis of OsHSBP1 and OsHSBP2 revealed their involvement in the heat shock response in rice (Oryza sativa L.).	J. Exp. Bot.	63(16)	6003-16	2012	_,_,CATA,PRX11	OsHSBP2,OsHSBP1,CATA1, Cat A1*, OSCAT-A, Cat2, CatA1, CAT-A, OsCatA, OsCAT, CAT, catA, OSCATA, OsCATc, OsCATA, OsCAT1A, CAT1, OsCAT1, OsCATC, OsCAT2,OsPOD, prx11, Osprx11, OsPRX11
36039	22987115	Huang T.L., Nguyen Q.T., Fu S.F., Lin C.Y., Chen Y.C., Huang H.J.	Transcriptomic changes and signalling pathways induced by arsenic stress in rice roots.	Plant Mol. Biol.	80(6)	587-608	2012		
36042	22971580	Xiao H.X., Lin Q.L., Liu G.Q., Yu F.X.	A comparative study of the characteristics of cross-linked, oxidized and dual-modified rice starches.	Molecules	17(9)	10946-57	2012		
36047	23020599	Hubbart S., Bird S., Lake J.A., Murchie E.H.	Does growth under elevated CO(2) moderate photoacclimation in rice?	Physiol Plant	148(2)	297-306	2013		
36049	22936328	Vaid N., Pandey P.K., Tuteja N.	Genome-wide analysis of Lectin receptor-like kinase family from Arabidopsis and rice.	Plant Mol. Biol.	80(4-5)	365-88	2012		
36051	22984395	Ou X., Zhang Y., Xu C., Lin X., Zang Q., Zhuang T., Jiang L., von Wettstein D., Liu B.	Transgenerational inheritance of modified DNA methylation patterns and enhanced tolerance induced by heavy metal stress in rice (Oryza sativa L.).	PLoS ONE	7(9)	e41143	2012		
36052	22984040	Hvistendahl M., Enserink M.	GM research. Charges fly, confusion reigns over golden rice study in Chinese children.	Science	337(6100)	1281	2012		
36053	23000158	Jeon E.H., Pak J.H., Kim M.J., Kim H.J., Shin S.H., Lee J.H., Kim D.H., Oh J.S., Oh B.J., Jung H.W., Chung Y.S.	Ectopic expression of ubiquitin-conjugating enzyme gene from wild rice, OgUBC1, confers resistance against UV-B radiation and Botrytis infection in Arabidopsis thaliana.	Biochem. Biophys. Res. Commun.	427(2)	309-14	2012		
36055	23240403	Ou Q.H., Zhao X.X., Zhou X.P., Liu G., Li L., Zhang L.	[Research on rice blast, corn and broad bean rust leaves by FTIR spectroscopy].	Guang Pu Xue Yu Guang Pu Fen Xi	32(9)	2389-92	2012		
36057	22967050	Hakata M., Kuroda M., Miyashita T., Yamaguchi T., Kojima M., Sakakibara H., Mitsui T., Yamakawa H.	Suppression of alpha-amylase genes improves quality of rice grain ripened under high temperature.	Plant Biotechnol. J.	10(9)	1110-7	2012		
36058	22994889	Detmann K.C., Ara?jo WL., Martins S.C., Sanglard L.M., Reis J.V., Detmann E., Rodrigues F?., Nunes-Nesi A., Fernie A.R., DaMatta F.M.	Silicon nutrition increases grain yield, which, in turn, exerts a feed-forward stimulation of photosynthetic rates via enhanced mesophyll conductance and alters primary metabolism in rice.	New Phytol.	196(3)	752-62	2012		
36059	22965749	Jang S.J., Wi S.J., Choi Y.J., An G., Park K.Y.	Increased polyamine biosynthesis enhances stress tolerance by preventing the accumulation of reactive oxygen species: T-DNA mutational analysis of Oryza sativa lysine decarboxylase-like protein 1.	Mol. Cells	34(3)	251-62	2012	LOGL9,_	LOGL9,LDC, PAP15, OsPAP15 
36060	23012434	Zheng L., Yamaji N., Yokosho K., Ma J.F.	YSL16 is a phloem-localized transporter of the copper-nicotianamine complex that is responsible for copper distribution in rice.	Plant Cell	24(9)	3767-82	2012	YSL15,HMA9,ZIP4,FER2,IRT1,IRO2,YSL2,COPT1,YSL16,COPT5	OsYSL15, OsYs7,OsHMA9 ,oshma9-1, oshma9-2, HMA9, OsHMP33, HMP33,OsZIP4,OsFER2, OsFer2,OsIRT1, ZIP10, OsZIP10, OsZIP12, ZIP12,OsIRO2, OsbHLH056, bHLH056, bHLH56, OsbHLH56,OsYSL2, Os-YSL2, OsYs6 ,OsCOPT1,OsYSL16, Os-YSL16, OsYs14 ,OsCOPT5
36061	22989945	Hsu Y.Y., Chao Y.Y., Kao C.H.	Methyl jasmonate-induced lateral root formation in rice: the role of heme oxygenase and calcium.	J. Plant Physiol.	170(1)	63-9	2013	SE5,YLC2	Se5, OsHO1, OsHO-1, OsHY1, HO-1, HO1, OsSE5, YGL2, YGL2/HO1,OsHO2, HO2, OsHO-2, HO-2
36062	22970232	Kim Y.J., Yeu S.Y., Park B.S., Koh H.J., Song J.T., Seo H.S.	Protein disulfide isomerase-like protein 1-1 controls endosperm development through regulation of the amount and composition of seed proteins in rice.	PLoS ONE	7(9)	e44493	2012	PDIL1-1,CP1	OsPDIL1;1, PDIL1;1, PDIL 1-1, PDI, OsPDIL1-1, OsTrx28, Trx28,OsCP1, Os CP1
36063	23226082	Hori K., Kataoka T., Miura K., Yamaguchi M., Saka N., Nakahara T., Sunohara Y., Ebana K., Yano M.	Variation in heading date conceals quantitative trait loci for other traits of importance in breeding selection of rice.	Breed. Sci.	62(3)	223-34	2012		
36064	23139871	Zhu Y., Ellstrand N.C., Lu B.R.	Sequence polymorphisms in wild, weedy, and cultivated rice suggest seed-shattering locus sh4 played a minor role in Asian rice domestication.	Ecol Evol	2(9)	2106-13	2012		
36071	22750319	Dutt S., Gaur V.S., Taj G., Kumar A.	Differential induction of two different cystatin genes during pathogenesis of Karnal bunt (Tilletia indica) in wheat under the influence of jasmonic acid.	Gene	506(1)	253-60	2012	OC1,_,_,OC2	Oc1*, Oc1, OC-I, SPOC-I, OsCP1, Oc, OCI, OsCYS1, OsPR6b, PR6b,,,Oc2*, Oc2, OC-II, OC-III, OCII, OsCYS2
36073	22930448	Huang J., Sun S., Xu D., Lan H., Sun H., Wang Z., Bao Y., Wang J., Tang H., Zhang H.	A TFIIIA-type zinc finger protein confers multiple abiotic stress tolerances in transgenic rice (Oryza sativa L.).	Plant Mol. Biol.	80(3)	337-50	2012	LEA3-1,P5CS,DREB1B,DREB1A,_,ZFP182	OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3, OsLEA3A, LEA3A,OsP5CS, P5CS1, OsP5CS1, OsALDH18B1, ALDH18B1, OsP5CS-1, P5CS-1,OsDREB1B, ERF31, OsERF031, OsERF#031, OsERF31, AP2/EREBP#169, AP2/EREBP169, OsDREB1b, OsDREB1C, OsCBF1, CBF1,OsDREB1A, Os DREB1A, CBF3, OsCBF3, OsDREB1A/OsCBF3, ERF24, OsERF24, OsERF024, OsERF#024, AP2/EREBP#114, AP2/EREBP114, OsDREBL,ZIURP1, Ub-CEP52-1,ZFP182/ZOS3-21, ZOS3-21
36074	22899079	Wu H.C., Jinn T.L.	Oscillation regulation of Ca2+ /calmodulin and heat-stress related genes in response to heat stress in rice (Oryza sativa L.).	Plant Signal Behav	7(9)	1056-7	2012		
36075	23007447	Yang M., Qi W., Sun F., Zha X., Chen M., Huang Y., Feng Y.Q., Yang J., Luo X.	Overexpression of rice LRK1 restricts internode elongation by down-regulating OsKO2.	Biotechnol. Lett.	35(1)	121-8	2013		
36079	23226081	Iftekharuddaula K.M., Salam M.A., Newaz M.A., Ahmed H.U., Collard B.C., Septiningsih E.M., Sanchez D.L., Pamplona A.M., Mackill D.J.	Comparison of phenotypic versus marker-assisted background selection for the SUB1 QTL during backcrossing in rice.	Breed. Sci.	62(3)	216-22	2012		
36083	23116667	Chen Z., Pan Y., Wang S., Ding Y., Yang W., Zhu C.	Overexpression of a protein disulfide isomerase-like protein from Methanothermobacter thermoautotrophicum enhances mercury tolerance in transgenic rice.	Plant Sci.	197	10-20	2012		
36084	22989375	Wei X., Qiao W.H., Chen Y.T., Wang R.S., Cao L.R., Zhang W.X., Yuan N.N., Li Z.C., Zeng H.L., Yang Q.W.	Domestication and geographic origin of Oryza sativa in China: insights from multilocus analysis of nucleotide variation of O. sativa and O. rufipogon.	Mol. Ecol.	21(20)	5073-87	2012	EF1,_,_,_,WX1,SE1	Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,ycf6,trnC, trnC(GCA), trnC-GCA,cox3, coxIII, cox3a, cox3b, cox3c,wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, OsHd1,  Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21
36086	22899054	Zhang J., Xu L., Wang F., Deng M., Yi K.	Modulating the root elongation by phosphate/nitrogen starvation in an OsGLU3 dependant way in rice.	Plant Signal Behav	7(9)	1144-5	2012		
36088	22990444	Kurusu T., Hamada H., Koyano T., Kuchitsu K.	Intracellular localization and physiological function of a rice Ca ( 2+) -permeable channel OsTPC1.	Plant Signal Behav	7(11)		2012		
36090	22956125	Yin H., Gao P., Liu C., Yang J., Liu Z., Luo D.	SUI-family genes encode phosphatidylserine synthases and regulate stem development in rice.	Planta	237(1)	15-27	2013	SUI2,SUI1,SUI3,OSH15	OsSUI2, ES5, OsES5,OsSUI1, OsPSS-1, PSS-1, OsPSS1, PSS1,OsSUI3,OSH15, OsH15, OSKN3, Oskn3, HOS3, D6, d6, OSH15/Oskn3, HB253, H15, OsKNOX3, KNOX3
36092	22933119	Duan Y., Xing Z., Diao Z., Xu W., Li S., Du X., Wu G., Wang C., Lan T., Meng Z., Liu H., Wang F., Wu W., Xue Y.	Characterization of OsMADS6-5, a null allele, reveals that OsMADS6 is a critical regulator for early flower development in rice (Oryza sativa L.).	Plant Mol. Biol.	80(4-5)	429-42	2012	COG1,LHS1,MFO1	OsMADS17, MADS17, NMADS3, RMADS213, nmads3,OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO, OsLHS1, OsLG3b, LG3b, qLGY3, LGY3, DLN80, OsDLN80, OLR, OsOLR, GW3p6, OsGW3p6, OsMADS1GW3p6, MADS1GW3p6, qLGY3/OsLG3b/GW3p6,OsMADS6, MADS6, OsMFO1
36093	22985247	Nahar K., Kyndt T., Nzogela Y.B., Gheysen G.	Abscisic acid interacts antagonistically with classical defense pathways in rice-migratory nematode interaction.	New Phytol.	196(3)	901-13	2012		
36097	23001338	Huang D., Qiu Y., Zhang Y., Huang F., Meng J., Wei S., Li R., Chen B.	Fine mapping and characterization of BPH27, a brown planthopper resistance gene from wild rice (Oryza rufipogon Griff.).	Theor. Appl. Genet.	126(1)	219-29	2013	BPH27	Bph27
36101	22899082	Pu C.X., Sun Y.	Rice Crinkly4 receptor-like kinase positively regulates culm elongation and amino acid K532 is not essential for its kinase activity.	Plant Signal Behav	7(9)	1062-4	2012		
36102	22955680	Li Y., Zhang T., Shen Z.W., Xu Y., Li J.Y.	Overexpression of maize anthocyanin regulatory gene Lc affects rice fertility.	Biotechnol. Lett.	35(1)	115-9	2013		
36104	22945626	Lin C., Lin X., Hu L., Yang J., Zhou T., Long L., Xu C., Xing S., Qi B., Dong Y., Liu B.	Dramatic genotypic difference in, and effect of genetic crossing on, tissue culture-induced mobility of retrotransposon Tos17 in rice.	Plant Cell Rep.	31(11)	2057-63	2012		
36105	22996334	Matsuda S., Funabiki A., Furukawa K., Komori N., Koike M., Tokuji Y., Takamure I., Kato K.	Genome-wide analysis and expression profiling of half-size ABC protein subgroup G in rice in response to abiotic stress and phytohormone treatments.	Mol. Genet. Genomics	287(10)	819-35	2012		
36107	23007553	Bang S.W., Park S.H., Jeong J.S., Kim Y.S., Jung H., Ha S.H., Kim J.K.	Characterization of the stress-inducible OsNCED3 promoter in different transgenic rice organs and over three homozygous generations.	Planta	237(1)	211-24	2013	NCED3	OSNCED3, OsNCED-3, OsNCED3, OsNCED3a, NCED3a, OsNCED4, NCED4, OsNECD2, OsNCED2b, NCED2b 
36111	23116677	Mittal D., Madhyastha D.A., Grover A.	Gene expression analysis in response to low and high temperature and oxidative stresses in rice: combination of stresses evokes different transcriptional changes as against stresses applied individually.	Plant Sci.	197	102-13	2012	HSFA2A,HSFA3,HSF26,HSFA6	HSfA2a, OsHsfA2a, OsHsf-11, rHsf4, OsHSF11, HSF11, HSF4, RHSP2, OsHsfA2a-1, OsHsfA2a-2, OsHsfA2a-3, OsHsfA2a-4, OsHsfA2a-5, OsHsfA2a-6, OsHsfA2e, HsfA2e ,HSfA3, OsHsfA3, OsHsf-07, HSF07, OsHSF7, HSF7, DLN57, OsDLN57,OsHsf26,HSfA6, OsHsfA6, OsHsf-17, HSF17, OsHSF17, HSFA6A, OsHsfA2f, HsfA2f, OsHsfA7b, HsfA7b
36112	22927256	Lanka S.K., Ottea J.A., Davis J.A., Hernandez A.B., Stout M.J.	Systemic effects of thiamethoxam and chlorantraniliprole seed treatments on adult Lissorhoptrus oryzophilus (Coleoptera: Curculionidae) in rice.	Pest Manag. Sci.	69(2)	250-6	2013		
36117	22939271	He H., Wang H., Fang C., Wu H., Guo X., Liu C., Lin Z., Lin W.	Barnyard grass stress up regulates the biosynthesis of phenolic compounds in allelopathic rice.	J. Plant Physiol.	169(17)	1747-53	2012		
36118	22868211	Sarhadi E., Bazargani M.M., Sajise A.G., Abdolahi S., Vispo N.A., Arceta M., Nejad G.M., Singh R.K., Salekdeh G.H.	Proteomic analysis of rice anthers under salt stress.	Plant Physiol. Biochem.	58	280-7	2012		
36120	23226080	Bosetti F., Montebelli C., Novembre A.D., Chamma H.P., Pinheiro J.B.	Genetic variation of germination cold tolerance in Japanese rice germplasm.	Breed. Sci.	62(3)	209-15	2012		
36121	22984180	Todaka D., Nakashima K., Maruyama K., Kidokoro S., Osakabe Y., Ito Y., Matsukura S., Fujita Y., Yoshiwara K., Ohme-Takagi M., Kojima M., Sakakibara H., Shinozaki K., Yamaguchi-Shinozaki K.	Rice phytochrome-interacting factor-like protein OsPIL1 functions as a key regulator of internode elongation and induces a morphological response to drought stress.	Proc. Natl. Acad. Sci. U.S.A.	109(39)	15947-52	2012	PIL13,EXPA2,EXPA1,EXPA4,ERF42,NAC6,EXPA6	OsPIL1, OsPIL13, OsbHLH152, bHLH152, PIF7, OsPIF7, OsPIF4, PIF4, OsPIF1,OsEXP2, OsEXP2(Os-EXP2), Os-EXP2, EXPA2, OsEXPA2, OsaEXPa1.23, RiExB, RiExC, Os-EXPA2,OsEXP1, EXPA1, OsEXPA1, OsaEXPa1.16, RiExA,OsEXP4 (Os-EXP4), OsEXPA4, OsEXP4, Os-EXP4, OsaEXPa1.22,OsERF#042, OsERF042, OsERF42, AP2/EREBP#048, AP2/EREBP48, OsDREB2B, DREB2B, OsDREB2B2, OsDREB2A, DREB2A,OsNAC6, ONAC048, NAC48, SNAC2, SNAC2/OsNAC6, OsNAC6/ONAC048, OsSNAC2, SNAC-2, OsSNAC-2, OsNAC2,OsEXPA6, OsEXP6, osaEXPa1.24
36123	22993695	Hayashi S., Wakasa Y., Takaiwa F.	Functional integration between defence and IRE1-mediated ER stress response in rice.	Sci Rep	2	670	2012		
36129	22960246	Luo L., Li W., Miura K., Ashikari M., Kyozuka J.	Control of tiller growth of rice by OsSPL14 and Strigolactones, which work in two independent pathways.	Plant Cell Physiol.	53(10)	1793-801	2012	WFP,OSH1,D10	OsSPL14, SPL14, IPA1, WFP/IPA1, OsSPL14/WFP/IPA1, OsIPA1,  IPA1/OsSPL14,OSKN1, Oskn1, OsKN1, OSH1/Oskn1, HB75,d10(d15,d16), d16, d15, dwf9, d10, OsCCD8b, OsCCD8, CCD8, OsD10
36130	22973062	Wang J., Hu J., Qian Q., Xue H.W.	LC2 and OsVIL2 promote rice flowering by photoperoid-induced epigenetic silencing of OsLF.	Mol Plant	6(2)	514-27	2013	HD3A,MADS50,LC2,MADS56,SE1,CO3,VIL1,VIL3,VIL4,COL4,_	Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,OsMADS50, AGL20, SOC1, OsSOC1, RMADS208, OsSOC1/ OsMADS50/DTH3, DTH3, OsDTH3,OsLC2, OsVIL2, VIL2, OsVIL3,OsMADS56, FDRMADS8, RMADS214,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, OsHd1,  Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,OsB, OsCO3, OsBBX27, OsCO3/OsB, OsCCT31, CO3, BBX27, CCT31,OsVIL1, OsVIL2,OsVIL3, OsVIL4, VIL1,OsVIL4, OsVIL1,OsCOL4, OsD, OsBBX5, OsCOL4/OsD, OsCCT06, BBX5, CCT06,OsLF, LF, OsbHLH119
36131	23013464	Matsushita A., Inoue H., Goto S., Nakayama A., Sugano S., Hayashi N., Takatsuji H.	The nuclear ubiquitin proteasome degradation affects WRKY45 function in the rice defense program.	Plant J.			2012	NH1,GSTU4,_,SPL7,WRKY45,WRKY62	OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2, DLN5, OsDLN5,  OsBTBA1, BTBA1,OsGSTU4, GST4,Lox2:Os:1, OsLOX9, LOX9, OsLOX8, LOX8, OsLOX2, LOX2, OsRLL, OsHI-LOX, HI-LOX, RLL2 LOX, RLL2, Lox2osPil, OsLOX2;1, LOX2;1, OsLOX1, OsLOX7, LOX7,spl7, HSFA4D, HSF10, HSF15, OsHSF15, SP17, OsHsf-15, rHsf10, OsHsfA4d, HSfA4d, lrd13, HSF1,OsWRKY45, OsWRKY45-1, OsWRKY45-2, WRKY45-1, WRKY45-2,OsWRKY62, OsWRKY62.1, OsWRKY62.2, XB10, OsWRKY62-1, OsWRKY62-2
36133	22899052	Macovei A., Vaid N., Tula S., Tuteja N.	A new DEAD-box helicase ATP-binding protein (OsABP) from rice is responsive to abiotic stress.	Plant Signal Behav	7(9)	1138-43	2012	_,_,_,_,_,GRP6,IMPBETA1,_	,,OsFBX234, OsFbox369, Os_F0191,  OsFBX234, FBX234,OsRH26,OsABP, OsRH31,OsGRP6, GRRBP7,OsImpbeta1, OsImp beta 1,OsRH25, RH25
36134	22922198	Cai H., Lu Y., Xie W., Zhu T., Lian X.	Transcriptome response to nitrogen starvation in rice.	J. Biosci.	37(4)	731-47	2012		
36138	23028360	Nosaka M., Itoh J., Nagato Y., Ono A., Ishiwata A., Sato Y.	Role of transposon-derived small RNAs in the interplay between genomes and parasitic DNA in rice.	PLoS Genet.	8(9)	e1002953	2012	MIR820D,MIR820E,MIR820A,MIR820C,DRM2,MIR820B	miR820d, osa-miR820d, osa-MIR820d,miR820e, osa-miR820e, osa-MIR820e,miR820a, osa-miR820a, osa-MIR820a, OsmiR820a,miR820c, osa-miR820c, osa-MIR820c, OsmiR820c,OsDRM2, osdrm2, DRM2-1,miR820b, osa-miR820b, osa-MIR820b, OsmiR820b
36139	23226086	Phan P.D., Kageyama H., Ishikawa R., Ishii T.	Estimation of the outcrossing rate for annual Asian wild rice under field conditions.	Breed. Sci.	62(3)	256-62	2012		
36140	23010196	Mohanty B., Herath V., Wijaya E., Yeo H.C., de Los Reyes BG., Lee D.Y.	Patterns of cis-element enrichment reveal potential regulatory modules involved in the transcriptional regulation of anoxia response of japonica rice.	Gene	511(2)	235-42	2012		
36142	23116672	You J., Hu H., Xiong L.	An Ornithine delta-aminotransferase gene OsOAT confers drought and oxidative stress tolerance in rice.	Plant Sci.	197	59-69	2012	NAC6,OAT	OsNAC6, ONAC048, NAC48, SNAC2, SNAC2/OsNAC6, OsNAC6/ONAC048, OsSNAC2, SNAC-2, OsSNAC-2, OsNAC2,OsOAT, delta-OAT
36143	23037947	Xue D.W., Jiang H., Hu J., Zhang X.Q., Guo L.B., Zeng D.L., Dong G.J., Sun G.C., Qian Q.	Characterization of physiological response and identification of associated genes under heat stress in rice seedlings.	Plant Physiol. Biochem.	61	46-53	2012		
36144	23024799	Duan J., Cai W.	OsLEA3-2, an abiotic stress induced gene of rice plays a key role in salt and drought tolerance.	PLoS ONE	7(9)	e45117	2012	LEA17	OsLEA17, OsLEA3-2, LEA3-2, LEA1
36146	23024213	Ding J., Shen J., Mao H., Xie W., Li X., Zhang Q.	RNA-directed DNA methylation is involved in regulating photoperiod-sensitive male sterility in rice.	Mol Plant	5(6)	1210-6	2012		
36147	22947243	Nadal A., Montero M., Company N., Badosa E., Messeguer J., Montesinos L., Montesinos E., Pla M.	Constitutive expression of transgenes encoding derivatives of the synthetic antimicrobial peptide BP100: impact on rice host plant fitness.	BMC Plant Biol.	12	159	2012		
36151	22960619	Pandey M.K., Rani N.S., Madhav M.S., Sundaram R.M., Varaprasad G.S., Sivaranjani A.K., Bohra A., Kumar G.R., Kumar A.	Different isoforms of starch-synthesizing enzymes controlling amylose and amylopectin content in rice (Oryza sativa L.).	Biotechnol. Adv.	30(6)	1697-706	2012		
36153	22947050	Francis S.E., Ersoy R.A., Ahn J.W., Atwell B.J., Roberts T.H.	Serpins in rice: protein sequence analysis, phylogeny and gene expression during development.	BMC Genomics	13	449	2012	_,_,_,_,_,_,_,_,_,_,_,_,_,_	OsSRP-QKG, OrysaZ12,OsSRP-LGC, OrysaZ1,OsSRP-PLP, OrysaZ9,OsSRP-FRS, OrysaZxb,OsSRP-PTY, OrysaZ10,OsSRP-FAS, OrysaZ6c,OsSRP-FLC, OrysaZ2b,OsSRP-GMS, OrysaZ5,OsSRP-LLS, OrysaZ2a,OsSRP-GAA, OrysaZ6a,OsSRP-GRA, OrysaZ6b,OsSRP-PSG, OrysaZ8,OsSRP-LRS, OsSPN, OrysaZxa,OsSRP-PGY, OrysaZ11
36154	22960759	Kawakatsu T., Tamaoki F.	Reduction of 13 kD prolamins increases recombinant protein yield and recovery rate in rice endosperm.	Plant Signal Behav	7(11)		2012		
36155	22899049	Bhadauria V., Banniza S., Vandenberg A., Selvaraj G., Wei Y.	Alanine: glyoxylate aminotransferase 1 is required for mobilization and utilization of triglycerides during infection process of the rice blast pathogen, Magnaporthe oryzae.	Plant Signal Behav	7(9)	1206-8	2012		
36156	23053539	Zhou K., Ren Y., Lv J., Wang Y., Liu F., Zhou F., Zhao S., Chen S., Peng C., Zhang X., Guo X., Cheng Z., Wang J., Wu F., Jiang L., Wan J.	Young leaf chlorosis 1, a chloroplast-localized gene required for chlorophyll and lutein accumulation during early leaf development in rice.	Planta	237(1)	279-92	2013	PSAA,YLC1,PSBA,V5B,ELL,CHLH,HEMA,YGL98,_,CAB1R,FGL,CAB2R	PsaA, psaA, PsAA1, psaA1,OsV5A, V5A,PsbA, psbA, OsPsbA, PSBD1, OsPSBD1, psbD1,OsV5B,chlI, OsChlI, ChlI, CHLI, OsCHLI, OsCHLI/ELL, OsELL,OsChlH, ChlH, OsCHLH,HEMA1, OsHEMA, GluTR, OsHEMA1, hemA,OsChlD, ChlD, CHLD, OsCHLD, Ygl7, YGL3, OsvWA12, vWA12,,cab1R, LHCP, CAB, OsLhcb1, Lhcb1, Cab1, OsCAB1, Lhcb1b, OsLhcb1b, CAB2R,fgl(fl), fl, fgl, OsFGL, OsPorB, PoPA, PORA, porA, OsPORA, PORB, OsPORB,Oscab2R, CAB-2, OsLhcp, Lhcb1, Lhcb1a, OsLhcb1, OsLhcb1a 
36168	22994911	Wang Y., Bai X., Yan C., Gui Y., Wei X., Zhu Q.H., Guo L., Fan L.	Genomic dissection of small RNAs in wild rice (Oryza rufipogon): lessons for rice domestication.	New Phytol.	196(3)	914-25	2012		
36172	23019369	Zhou G., Chen Y., Yao W., Zhang C., Xie W., Hua J., Xing Y., Xiao J., Zhang Q.	Genetic composition of yield heterosis in an elite rice hybrid.	Proc. Natl. Acad. Sci. U.S.A.	109(39)	15847-52	2012		
36176	22968716	Ding B., Bellizzi Mdel R., Ning Y., Meyers B.C., Wang G.L.	HDT701, a histone H4 deacetylase, negatively regulates plant innate immunity by modulating histone H4 acetylation of defense-related genes in rice.	Plant Cell	24(9)	3783-94	2012	DSG1,SPIN1,FLS2,HDT701,WRKY53,SGT1,WRKY71	OsMAPK6, MAPK6, OsMPK6, OsSIPK, SIPK, OsMAPK1, MAPK1, MPK1, OsMPK1, MPK6, OsDSG1,Spin1, OsSPIN1, OsKH16, KH16,Os-FLS2, OsFLS2, OsCLV2f, CLV2f,OsHDT1, HDT701, OsHDT701, ZOS5-12, OsZOS5-12, HDT1,OsWRKY53, WRKY-53,OsSgt1, OsSGT1, Os SGT1,OsWRKY71, WRKY-71
36179	23029003	Wei Y., Shohag M.J., Yang X.	Biofortification and bioavailability of rice grain zinc as affected by different forms of foliar zinc fertilization.	PLoS ONE	7(9)	e45428	2012		
36186	23079822	Rahim H.A., Bhuiyan M.A., Lim L.S., Sabu K.K., Saad A., Azhar M., Wickneswari R.	Identification of quantitative trait loci for blast resistance in BC?F? and BC?F5 advanced backcross families of rice.	Genet. Mol. Res.	11(3)	3277-89	2012		
36191	22970151	Li W., Shao M., Zhong W., Yang J., Okada K., Yamane H., Zhang L., Wang G., Wang D., Xiao S., Chang S., Qian G., Liu F.	Ectopic expression of Hrf1 enhances bacterial resistance via regulation of diterpene phytoalexins, silicon and reactive oxygen species burst in rice.	PLoS ONE	7(9)	e43914	2012		
36197	23240408	Xin Y., Yang Z.F., Luo H.W., Yao L.M., Zhu P.	[Determination of translocatable matter of rice by near infrared reflectance spectroscopy].	Guang Pu Xue Yu Guang Pu Fen Xi	32(9)	2414-7	2012		
36199	23089365	Jiang J., Tan L., Zhu Z., Fu Y., Liu F., Cai H., Sun C.	Molecular evolution of the TAC1 gene from rice (Oryza sativa L.).	J Genet Genomics	39(10)	551-60	2012		
36200	22972350	Nakamura S., Machida K., Ohtsubo K.	Search for cell-wall-degrading enzymes of world-wide rice grains by PCR and their effects on the palatability of rice.	Biosci. Biotechnol. Biochem.	76(9)	1645-54	2012		
36202	22926745	Pyngrope S., Bhoomika K., Dubey R.S.	Reactive oxygen species, ascorbate-glutathione pool, and enzymes of their metabolism in drought-sensitive and tolerant indica rice (Oryza sativa L.) seedlings subjected to progressing levels of water deficit.	Protoplasma	250(2)	585-600	2013		
36209	22902687	Li S., Liu W., Zhang X., Liu Y., Li N., Li Y.	Roles of the Arabidopsis G protein gamma subunit AGG3 and its rice homologs GS3 and DEP1 in seed and organ size control.	Plant Signal Behav	7(10)	1357-9	2012		
36210	22994594	Li C.R., Liang D.D., Li J., Duan Y.B., Li H., Yang Y.C., Qin R.Y., Li L., Wei P.C., Yang J.B.	Unravelling mitochondrial retrograde regulation in the abiotic stress induction of rice ALTERNATIVE OXIDASE 1 genes.	Plant Cell Environ.	36(4)	775-88	2013	SODA1,AOX1B,SOD4,SODCC1,AOX1C,AOX1A	SodA1, OsSODA1, Mn-SOD, Mn- SOD, OsMSD, MnSOD, OsMnSOD, MnSOD1, OsMnSOD1,AOX1b, OsAOX1b,OsSOD4, OsCSD4, OsCu/Zn-SOD1, Cu/Zn-SOD1, OsCSD2, CSD2, OsSOD4-Cu/Zn, SOD4-Cu/Zn, Cu/ZnSOD3, CuZnSOD3, sodCp, OssodCp, OsCu/ZnSOD3, CuZnSOD2, OsSOD1,sodCc1, SODCC.1, sodA, RSODA, OsSOD1, OsCSD2, OsSodA, SodCc2, OsSODA1, SODCc1-Cu/Zn, OsCu/Zn-SOD2, Cu/Zn-SOD2, OsCSD1.2, CSD1.2, OsSODCc1-Cu/Zn, SODCc1-Cu/Zn, CuZnSOD1, Cu/ZnSOD1, OsCu/ZnSOD1, OsCSD4, CDS4, CuZnSOD4, OsCuZnSOD1, OsCSD1, CSD1, OsSOD2,OsAOX1c,Ao1-1, AOX1a, OsAOX1a, AOX 1a
36211	23175467	Hu J., Cheng M., Gao G., Zhang Q., Xiao J., He Y.	Pyramiding and evaluation of three dominant brown planthopper resistance genes in the elite indica rice 9311 and its hybrids.	Pest Manag. Sci.	69(7)	802-8	2013		
36213	23031077	Helliwell E.E., Wang Q., Yang Y.	Transgenic rice with inducible ethylene production exhibits broad-spectrum disease resistance to the fungal pathogens Magnaporthe oryzae and Rhizoctonia solani.	Plant Biotechnol. J.	11(1)	33-42	2013	PR1B,PR5,ACS2	OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1, OsPR1a, PR1a,OsPR5, Pir2, PR-5, PR5-1,OsACS2, Os-ACS2
36216	23053198	Gautam N., Verma P.K., Verma S., Tripathi R.D., Trivedi P.K., Adhikari B., Chakrabarty D.	Genome-wide identification of rice class I metallothionein gene: tissue expression patterns and induction in response to heavy metal stress.	Funct. Integr. Genomics	12(4)	635-47	2012		
36221	23109182	Zhang S., Haider I., Kohlen W., Jiang L., Bouwmeester H., Meijer A.H., Schluepmann H., Liu C.M., Ouwerkerk P.B.	Function of the HD-Zip I gene Oshox22 in ABA-mediated drought and salt tolerances in rice.	Plant Mol. Biol.	80(6)	571-85	2012		
36222	23202939	Sinha D.K., Nagaraju J., Tomar A., Bentur J.S., Nair S.	Pyrosequencing-Based Transcriptome Analysis of the Asian Rice Gall Midge Reveals Differential Response during Compatible and Incompatible Interaction.	Int J Mol Sci	13(10)	13079-103	2012		
36226	23070303	Singh K.K., Ghosh S.	Regulation of glutamine synthetase isoforms in two differentially drought-tolerant rice (Oryza sativa L.) cultivars under water deficit conditions.	Plant Cell Rep.	32(2)	183-93	2013		
36227	23104764	Yamada S., Kano A., Tamaoki D., Miyamoto A., Shishido H., Miyoshi S., Taniguchi S., Akimitsu K., Gomi K.	Involvement of OsJAZ8 in jasmonate-induced resistance to bacterial blight in rice.	Plant Cell Physiol.	53(12)	2060-72	2012	COI1,COI1B,_,TIFY11G,TIFY6B,TIFY11F,TIFY11C,TIFY11A,TIFY10B,_,TIFY6A,TIFY11B,EG2,TIFY11D,TIFY5,TIFY11E,TIFY9,TIFY10A,TIFY10C	OsCOI1a, OsCOI1, Os_F0728, COI1a, F0728,  OsFBL4, FBL4,OsCOI1b, COI1b, OsCOI1H, COI1H, OsFbox260, Fbox260, Os_F0646,  OsFBL23, FBL23, OsCOl-1, COl-1,OsSkp15,OsJAZ 15, OsJAZ15, OsTIFY11g,OsJAZ8, JAZ8, OsJAZ 4, OsJAZ4, JAZ4, OsTIFY6b, OsJAZ4-2, JAZ4-2. OsJAZ3, JAZ3,OsJAZ 14, OsJAZ14, JAZ14, OsTIFY11f,OsJAZ2, JAZ2, OsJAZ 11, OsJAZ11, Os-JAZ11, JAZ11, OsTIFY11c, OsJAZ1, JAZ1,OsJAZ3, JAZ3, OsJAZ 9, OsJAZ9, Os-JAZ9, JAZ9, OsTIFY11a, OsJAZ6, JAZ6,OsJAZ6, OsJAZ 7, OsJAZ7, OsTIFY10B, JAZ6, JAZ7,OsNINJA1, NINJA1, OsNINJA2, OsNINJA, NINJA,OsJAZ9, OsJAZ 3, OsJAZ3, JAZ9, JAZ3, OsTIFY6a,OsJAZ4, JAZ4, OsJAZ 10, OsJAZ10, JAZ10, OsTIFY11b,OsTIFY3, OsJAZ10, OsJAZ 1, OsJAZ1, JAZ1, EG2/OsJAZ1, EG2, JAZ1/EG2,OsTIFY11d, OsJAZ1, JAZ1, OsJAZ 12, OsJAZ12, JAZ12,OsJAZ 2, OsJAZ2, JAZ2, OsTIFY5, OsSTA188, OsJAZ5, JAZ5,OsJAZ 13, OsJAZ13,JAZ13, OsTIFY11e, OsJAZ13a, OsJAZ13b, OsJAZ13c, OsJAZ13d,OsJAZ11, OsJAZ5, OsTIFY9, JAZ11, JAZ5, JAZ11/TIFY9 ,OsJAZ5, JAZ5, JAZ6, OsJAZ6, OsTIFY10A,OsJAZ7, JAZ7, OsJAZ 8, OsJAZ8, Os-JAZ8, JAZ8, OsTIFY10c, OsTIFY10c/OsJAZ8
36229	23072989	Takahashi R., Bashir K., Ishimaru Y., Nishizawa N.K., Nakanishi H.	The role of heavy-metal ATPases, HMAs, in zinc and cadmium transport in rice.	Plant Signal Behav	7(12)		2012	HMA1,_,HMA8,HMA6,HMA9,HMA4,HMA5,GCC7,HMA2	OsHMA1, osHMA1,OsHMA4, HMA4,OsHMA6, osHMA8, HMA6, OsHMP20, HMP20,OsHMA5, osHMA6, HMA5, OsHMP11, HMP11,OsHMA9 ,oshma9-1, oshma9-2, HMA9, OsHMP33, HMP33,OsHMA7, osHMA4, HMA7, OsHMP12, HMP12,OsHMA8, osHMA5, HMA8, OsHMP27, HMP27,HMA3, OsHMA3, OsHMA3a, OsHMA3n, osHMA3, OsHMP34, HMP34,OsHMA2, osHMA2, OsHMA2v 
36231	23048127	Fujita N., Hanashiro I., Suzuki S., Higuchi T., Toyosawa Y., Utsumi Y., Itoh R., Aihara S., Nakamura Y.	Elongated phytoglycogen chain length in transgenic rice endosperm expressing active starch synthase IIa affects the altered solubility and crystallinity of the storage alpha-glucan.	J. Exp. Bot.	63(16)	5859-72	2012		
36235	23122336	Jin G.H., Gho H.J., Jung K.H.	A systematic view of rice heat shock transcription factor family using phylogenomic analysis.	J. Plant Physiol.	170(3)	321-9	2013		
36236	23093362	Tang Z., Fan X., Li Q., Feng H., Miller A.J., Shen Q., Xu G.	Knockdown of a rice stelar nitrate transporter alters long-distance translocation but not root influx.	Plant Physiol.	160(4)	2052-63	2012	_,NRT2.4,NAR2.1,NRT2.2,HTNE,NRT2.1	OsNIA1, OsNia1, NIA1, Nia1, OsNR, NR, OsNR2, NR2, NIA2,OsNRT2.4,OsNAR2.1, OsNRT3.1A,OsNRT2.2, OsNRT2.1,NRT2.3, OsNRT2.3, OsNRT2;1, OsNRT2.3a, OsNRT2.3b, OsNRT2;3a, OsNRT2.5 ,OsNRT2.1, OsNRT2.2
36240	23061987	Lan A., Huang J., Zhao W., Peng Y., Chen Z., Kang D.	A salicylic acid-induced rice (Oryza sativa L.) transcription factor OsWRKY77 is involved in disease resistance of Arabidopsis thaliana.	Plant Biol (Stuttg)	15(3)	452-61	2013		
36242	23027943	Chiniquy D., Sharma V., Schultink A., Baidoo E.E., Rautengarten C., Cheng K., Carroll A., Ulvskov P., Harholt J., Keasling J.D., Pauly M., Scheller H.V., Ronald P.C.	XAX1 from glycosyltransferase family 61 mediates xylosyltransfer to rice xylan.	Proc. Natl. Acad. Sci. U.S.A.	109(42)	17117-22	2012	XAX1	OsXAX1, OsGT61-1, GT61-1
36243	23086301	Thuc le V., Geelen D., Ky H., Ooi S.E., Napis S.B., Sinniah U.R., Namasivayam P.	Overexpression of the oil palm (Elaeis guineensis Jacq.) TAPETUM DEVELOPMENT1-like Eg707 in rice affects cell division and differentiation and reduces fertility.	Mol. Biol. Rep.	40(2)	1579-90	2013		
36244	23298446	Tomita M.	Combining two semidwarfing genes d60 and sd1 for reduced height in 'Minihikari', a new rice germplasm in the 'Koshihikari' genetic background.	Genet Res (Camb)	94(5)	235-44	2012		
36246	23094910	Jeong J.S., Kim Y.S., Redillas M.C., Jang G., Jung H., Bang S.W., Choi Y.D., Ha S.H., Reuzeau C., Kim J.K.	OsNAC5 overexpression enlarges root diameter in rice plants leading to enhanced drought tolerance and increased grain yield in the field.	Plant Biotechnol. J.	11(1)	101-14	2013	NAC5	OsNAC5, NAC71, ONAC071, ONAC009, ONAC9, ONAC020, ONAC20, OnNAC5*, OnNAC5, OsNAC5/ONAC009
36253	23053072	Kim I.S., Kim Y.S., Yoon H.S.	Expression of salt-induced 2-Cys peroxiredoxin from Oryza sativa increases stress tolerance and fermentation capacity in genetically engineered yeast Saccharomyces cerevisiae.	Appl. Microbiol. Biotechnol.	97(8)	3519-33	2013	_	BAS1, OsTPX, Os2-Cys PrxA, 2-Cys PrxA, Os2-CysPrxA, 2-CysPrxA, 2CYSPRXA, OsPRX2, PRX2
36254	23083684	Chen Y., Li F., Ma Y., Chong K., Xu Y.	Overexpression of OrbHLH001, a putative helix-loop-helix transcription factor, causes increased expression of AKT1 and maintains ionic balance under salt stress in rice.	J. Plant Physiol.	170(1)	93-100	2013		
36255	23108869	Zeng Y., Huang W., Su L., Wu G., Zhuang J., Zhao W., Hua H., Li J., Xiao N., Xiong Y.	Effects of elevated CO? on the nutrient compositions and enzymes activities of Nilaparvata lugens nymphs fed on rice plants.	Sci China Life Sci	55(10)	920-6	2012		
36257	22964359	Anuradha K., Agarwal S., Rao Y.V., Rao K.V., Viraktamath B.C., Sarla N.	Mapping QTLs and candidate genes for iron and zinc concentrations in unpolished rice of Madhukar~Swarna RILs.	Gene	508(2)	233-40	2012	ZIP6,APT1,ZIP7,SIP2A,IRT1,MTP1,ZIP8,YSL4,NAS3,NAS1,YSL1,NRAMP1,NAS2,_	OsZIP6,OsAPT1, APRT,OsZIP7,Sip2A, ARD 2, ARD2, OsARD2, OsARD, IDI1, OsIDI1,OsIRT1, ZIP10, OsZIP10, OsZIP12, ZIP12,OsMTP1,OsZIP8, OsZIP1, ZIP1, OsZIP13, ZIP13,OsYSL4, OsYs17 ,OsNAS3,OsNAS1,OsYSL1, OsYs1,OsNramp1, OsNRAMP1, OsNramp6,OsNAS2, OsNAS1,
36258	23110212	Tsutsui T., Yamaji N., Huang C.F., Motoyama R., Nagamura Y., Ma J.F.	Comparative genome-wide transcriptional analysis of Al-responsive genes reveals novel Al tolerance mechanisms in rice.	PLoS ONE	7(10)	e48197	2012		
36259	23123597	Tanaka J., Nakanishi T., Shimoda H., Nakamura S., Tsuruma K., Shimazawa M., Matsuda H., Yoshikawa M., Hara H.	Purple rice extract and its constituents suppress endoplasmic reticulum stress-induced retinal damage in vitro and in vivo.	Life Sci.	92(1)	17-25	2013		
36260	23073696	Fukao T., Yeung E., Bailey-Serres J.	The submergence tolerance gene SUB1A delays leaf senescence under prolonged darkness through hormonal regulation in rice.	Plant Physiol.	160(4)	1795-807	2012		
36262	23112280	Du H., Wu N., Fu J., Wang S., Li X., Xiao J., Xiong L.	A GH3 family member, OsGH3-2, modulates auxin and abscisic acid levels and differentially affects drought and cold tolerance in rice.	J. Exp. Bot.	63(18)	6467-80	2012	GH3-7,PHS3,JAR3,RAA1,LCYB,GH3-9,GH3-10,TATC,JAR2,GH3-2,SAUR39,GH3-4,LC1,GH3-11,GH3-6,IAA20,PSY3,TLD1,GH3-8,JAR1	OsGH3-7,OsCRTISO, MHZ5, MHZ5/CRTISO, CRTISO,OsJAR3, OsGH3.12, GH3.12, OsGH3-12, GH3-12,OsRAA1, OsFPFL1, FPFL1,OsLCYbeta, OsLYCb, OsLCY, beta-OsLCY, beta-LCY,OsGH3-9,OsGH3-10,OsTATC, OsTatC, TatC,OsJAR2, OsGH3.3, GH3.3, OsGH3-3, JAR2/GH3-3, GH3-3, OsGH3.3/OsJAR2,OsGH3-2, OsGH3.2, GH3.2,OsSAUR39,OsGH3-4, OsGH3.4, GH3.4,OsGH3-1, GH3-1, OsGH3.1,GH3.1, OsLC1,OsGH3-11, OsGH3.11, GH3.11,OsGH3-6, OsGH3.6, GH3.6,OsIAA20,OsPSY, PSY, OsPSY3,OsGH3-13, GH3-13, TLD1/OsGH3.13, TLD1, OsGH3.13, TLD2,OsGH3-8, OsMGH3, OsGH3.8, GH3.8, OsGH3-2,OsJAR1, OsGH3.5, GH3.5, OsGH3-5, GH3-5
36263	23103994	Sun L., Zhang H., Li D., Huang L., Hong Y., Ding X.S., Nelson R.S., Zhou X., Song F.	Functions of rice NAC transcriptional factors, ONAC122 and ONAC131, in defense responses against Magnaporthe grisea.	Plant Mol. Biol.	81(1-2)	41-56	2013	ONAC131,ONAC122	NAC131,NAC122
36267	23076168	Chen Y.H., Chao Y.Y., Hsu Y.Y., Kao C.H.	Heme oxygenase is involved in H(2)O (2)-induced lateral root formation in apocynin-treated rice.	Plant Cell Rep.	32(2)	219-26	2013	SE5	Se5, OsHO1, OsHO-1, OsHY1, HO-1, HO1, OsSE5, YGL2, YGL2/HO1
36269	23059537	Wang C.Y., Shen R.F., Wang C., Wang W.	Root protein profile changes induced by Al exposure in two rice cultivars differing in Al tolerance.	J Proteomics	78	281-93	2013		
36272	23298447	Cheng L.R., Wang J.M., Ye G., Luo C.G., Xu J.L., Li Z.K.	Identification of stably expressed QTL for heading date using reciprocal introgression line and recombinant inbred line populations in rice.	Genet Res (Camb)	94(5)	245-53	2012		
36276	23086269	Kim S.H., Song M., Lee K.J., Hwang S.G., Jang C.S., Kim J.B., Kim S.H., Ha B.K., Kang S.Y., Kim D.S.	Genome-wide transcriptome profiling of ROS scavenging and signal transduction pathways in rice (Oryza sativa L.) in response to different types of ionizing radiation.	Mol. Biol. Rep.	39(12)	11231-48	2012		
36277	23073651	Yang S.Y., Gr?nlund M., Jakobsen I., Grotemeyer M.S., Rentsch D., Miyao A., Hirochika H., Kumar C.S., Sundaresan V., Salamin N., Catausan S., Mattes N., Heuer S., Paszkowski U.	Nonredundant regulation of rice arbuscular mycorrhizal symbiosis by two members of the PHOSPHATE TRANSPORTER1 gene family.	Plant Cell	24(10)	4236-51	2012	PT13,PT11	OsPT13, PHT1-13, OsPht1;13, ORYsa;PHT1;13,OsPT11, PHT1-11, OsPht1;11, ORYsa;PHT1;11
36280	23043988	Wakasa Y., Yasuda H., Takaiwa F.	Secretory type of recombinant Thioredoxin h induces ER stress in endosperm cells of transgenic rice.	J. Plant Physiol.	170(2)	202-10	2013		
36286	22902706	Sharma S., Mustafiz A., Singla-Pareek SL., Shankar Srivastava P., Sopory S.K.	Characterization of stress and methylglyoxal inducible triose phosphate isomerase (OscTPI) from rice.	Plant Signal Behav	7(10)	1337-45	2012	_	OscTPI
36287	23017837	Wang F., Wang Z., Zhu C.	Heteroexpression of the wheat Phytochelatin synthase gene (TaPCS1) in rice enhances cadmium sensitivity.	Acta Biochim. Biophys. Sin. (Shanghai)	44(10)	886-93	2012		
36288	22921008	Li S., Wan C., Hu C., Gao F., Huang Q., Wang K., Wang T., Zhu Y.	Mitochondrial mutation impairs cytoplasmic male sterility rice in response to H?O? stress.	Plant Sci.	195	143-50	2012		
36290	23066780	Wakasa Y., Takagi H., Hirose S., Yang L., Saeki M., Nishimura T., Kaminuma O., Hiroi T., Takaiwa F.	Oral immunotherapy with transgenic rice seed containing destructed Japanese cedar pollen allergens, Cry j 1 and Cry j 2, against Japanese cedar pollinosis.	Plant Biotechnol. J.	11(1)	66-76	2013		
36293	23202932	Imam M.U., Musa S.N., Azmi N.H., Ismail M.	Effects of white rice, brown rice and germinated brown rice on antioxidant status of type 2 diabetic rats.	Int J Mol Sci	13(10)	12952-69	2012		
36295	22902685	Arenhart R.A., Margis R., Margis-Pinheiro M.	The rice ASR5 protein: a putative role in the response to aluminum photosynthesis disturbance.	Plant Signal Behav	7(10)	1263-6	2012		
36296	23054004	Zhang H., Li L., Yu Y., Mo J., Sun L., Liu B., Li D., Song F.	Cloning and characterization of two rice long-chain base kinase genes and their function in disease resistance and cell death.	Mol. Biol. Rep.	40(1)	117-27	2013	_,_	OsLCBK1,OsLCBK2
36297	23090144	Fujino K., Yamanouchi U., Yano M.	Roles of the Hd5 gene controlling heading date for adaptation to the northern limits of rice cultivation.	Theor. Appl. Genet.	126(3)	611-8	2013	HD5,GHD7,SE1	Hd5(t)*, Hd5, qHD5, HAP3H, OsHAP3H, NF-YB, CBF-A, DTH8 , qHD5(t)*, Ghd8, Ghd8/DTH8, Lhd1, NF-YB11, OsNF-YB11, NFYB11, LH8, DTH8/Ghd8, RH8, DTH8/Ghd8/LHD1, CAR8, DTH8/Ghd8/ OsHAP3H, EF8, OsEF8,Ghd2, Ghd7, OsGhd7, OsCCT26, OsCMF8, OsI, Ghd7/Hd4, Hd4, EH7-1/Hd4, Ghd7-0a, EH7-1, EH7/Ghd7, EH7, OsEH7, GLW7.1, OsGLW7.1,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, OsHd1,  Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21
36298	22963226	Dai X., Ding Y., Tan L., Fu Y., Liu F., Zhu Z., Sun X., Sun X., Gu P., Cai H., Sun C.	LHD1, an allele of DTH8/Ghd8, controls late heading date in common wild rice (Oryza rufipogon).	J Integr Plant Biol	54(10)	790-9	2012	HD5	Hd5(t)*, Hd5, qHD5, HAP3H, OsHAP3H, NF-YB, CBF-A, DTH8 , qHD5(t)*, Ghd8, Ghd8/DTH8, Lhd1, NF-YB11, OsNF-YB11, NFYB11, LH8, DTH8/Ghd8, RH8, DTH8/Ghd8/LHD1, CAR8, DTH8/Ghd8/ OsHAP3H, EF8, OsEF8
36299	22947213	Fernandez J., Wilson R.A.	Why no feeding frenzy? Mechanisms of nutrient acquisition and utilization during infection by the rice blast fungus Magnaporthe oryzae.	Mol. Plant Microbe Interact.	25(10)	1286-93	2012		
36300	23043463	Macovei A., Tuteja N.	microRNAs targeting DEAD-box helicases are involved in salinity stress response in rice (Oryza sativa L.).	BMC Plant Biol.	12	183	2012	_,_,_,UCL4,_,MIR164E,CTD2,PRP5,MIR414,NAM,MIR408,TOGR1,_	OsDSHCT,OsDBH,RNAhA,OsUCL4,DDX46,miR164e, osa-MIR164e,OsCTD2, CHR740, OsCHR740, OsCLSY3, CLSY3, OsFEL1, FEL1,OsPRP5, OsRH42, RH42,miR414, osa-MIR414,OsNAM, OMTN5, ONAC092, ONAC92, NAC92, CUC2, OsNAM/CUC2, DLN165, OsDLN165, OsCUC1, CUC1, OsNAM/ OMTN5, OsNAM1, NAM1,miR408, osa-MIR408osa-miR408 osa-miR408-3p osa-miR408-5p, OsMIR408 ,OsTOGR1, DDX47, OsDDX47, OsRH10, RH10,OsABP, OsRH31
36301	23107769	Yang L., Chen J.H., Xu T., Nie M.H., Yang H.K.	Hypocholesterolemic effect of rice protein is due to regulating hepatic cholesterol metabolism in adult rats.	Gene	512(2)	470-6	2013		
36302	23077584	Mao D., Chen C.	Colinearity and similar expression pattern of rice DREB1s reveal their functional conservation in the cold-responsive pathway.	PLoS ONE	7(10)	e47275	2012	DREB1F,ERF28,DREB1G,DREB1D,DREB1E,DREB1C,ERF133,DREB1B,DREB1A	OsERF#027, OsERF027, OsERF27, ERF27, AP2/EREBP#081, AP2/EREBP81, OsDREB1F,OsERF#028, OsERF028, OsERF28, OsERF#029, OsERF029, OsERF29, ERF29, DERF4, OsDERF4, AP2/EREBP#161, AP2/EREBP161, OsDREB1J, OsDREB1I, OsDREB1G,OsDREB1G, OsERF025, OsERF#025, OsERF25, ERF25, AP2/EREBP#138, AP2/EREBP138, OsDREB1I,OsDREB1D, CBF4, ERF116, OsERF#116, OsERF116, AP2/EREBP#054, AP2/EREBP54, OsCbf1, OsCBF1,OsDREB1E, OsERF030, OsERF#030, OsERF30, ERF30, AP2/EREBP#160, AP2/EREBP160, OsDREB1-1,OsDREB1C, CBF1, ERF26, OsERF026, OsERF#026, OsERF26, AP2/EREBP#098, AP2/EREBP98, OsCBF2, CBF2,OsERF#133, OsERF133, AP2/EREBP#065, AP2/EREBP65, OsDREB1H, DREB1H, OsDREB1m, DREB1m,OsDREB1B, ERF31, OsERF031, OsERF#031, OsERF31, AP2/EREBP#169, AP2/EREBP169, OsDREB1b, OsDREB1C, OsCBF1, CBF1,OsDREB1A, Os DREB1A, CBF3, OsCBF3, OsDREB1A/OsCBF3, ERF24, OsERF24, OsERF024, OsERF#024, AP2/EREBP#114, AP2/EREBP114, OsDREBL
36304	23124348	Kim I.S., Kim Y.S., Yoon H.S.	Glutathione reductase from Oryza sativa increases acquired tolerance to abiotic stresses in a genetically modified Saccharomyces cerevisiae strain.	J. Microbiol. Biotechnol.	22(11)	1557-67	2012		
36306	23170937	Sun Y., Ward J.M.	Arg188 in rice sucrose transporter OsSUT1 is crucial for substrate transport.	BMC Biochem.	13	26	2012		
36307	23257077	Rawat N., Himabindu K., Neeraja C.N., Nair S., Bentur J.S.	Suppressive subtraction hybridization reveals that rice gall midge attack elicits plant-pathogen-like responses in rice.	Plant Physiol. Biochem.	63	122-30	2013	RSOSPR10	RSOsPR10, RsOsPR10a, OsPR10a, OsPR10alpha, OsPR10, PR10, OsBETV1, BETV1
36309	23020748	Chang Y., Long T., Wu C.	Effort and contribution of T-DNA Insertion mutant library for rice functional genomics research in China: review and perspective.	J Integr Plant Biol	54(12)	953-66	2012		
36311	23204500	Xie X., Yoneyama K., Kisugi T., Uchida K., Ito S., Akiyama K., Hayashi H., Yokota T., Nomura T., Yoneyama K.	Confirming stereochemical structures of strigolactones produced by rice and tobacco.	Mol Plant	6(1)	153-63	2013		
36315	23129483	Cabanos C., Ekyo A., Amari Y., Kato N., Kuroda M., Nagaoka S., Takaiwa F., Utsumi S., Maruyama N.	High-level production of lactostatin, a hypocholesterolemic peptide, in transgenic rice using soybean A1aB1b as carrier.	Transgenic Res.	22(3)	621-9	2013		
36319	23201414	Suzuki G., Nishiuchi C., Tsuru A., Kako E., Li J., Yamamoto M., Mukai Y.	Cellular localization of mitotic RAD21 with repetitive amino acid motifs in Allium cepa.	Gene	514(2)	75-81	2013	RAD21	OsRad21, OsRAD21-1, REC8
36320	23134977	Chinpongpanich A., Limruengroj K., Phean-o-pas S., Limpaseni T., Buaboocha T.	Expression analysis of calmodulin and calmodulin-like genes from rice, Oryza sativa L.	BMC Res Notes	5	625	2012	CAM1-1,CML5,CML8,CML9,CML13,CML7,CML11,CML3,CML4,CAM61	OsCaM1, OsCam1-1, OsCaM1-1, CAM3, Cam1-1, OsCAM1.1, CAM1.1,OsCML5,OsCML8,OsCML9,OsCML13,OsCML7, OsSTKC,OsCML11,OsCML3, OsSTA271, OsCML3m, OsCML3s,OsCML4,CaM61, OsCaM61, OsCML1, OsCML1d
36326	22940453	Hao Z., Wang L., Huang F., Tao R.	Expression patterns of defense genes in resistance of the panicles exserted from the caulis and from the tillers to neck blast in rice.	Plant Physiol. Biochem.	60	150-6	2012		
36328	23209649	Liu X., Li F., Tang J., Wang W., Zhang F., Wang G., Chu J., Yan C., Wang T., Chu C., Li C.	Activation of the jasmonic acid pathway by depletion of the hydroperoxide lyase OsHPL3 reveals crosstalk between the HPL and AOS branches of the oxylipin pathway in rice.	PLoS ONE	7(11)	e50089	2012		
36330	23017906	Wang D., Yuan S., Yin L., Zhao J., Guo B., Lan J., Li X.	A missense mutation in the transmembrane domain of CESA9 affects cell wall biosynthesis and plant growth in rice.	Plant Sci.	196	117-24	2012		
36331	23192363	Shigemitsu T., Masumura T., Morita S., Satoh S.	Accumulation of rice prolamin-GFP fusion proteins induces ER-derived protein bodies in transgenic rice calli.	Plant Cell Rep.	32(3)	389-99	2013		
36334	23208135	Ou S.J., Wang H.R., Chu C.C.	[Major domestication traits in Asian rice].	Yi Chuan	34(11)	1379-89	2012		
36335	23132948	Ishikawa S., Ishimaru Y., Igura M., Kuramata M., Abe T., Senoura T., Hase Y., Arao T., Nishizawa N.K., Nakanishi H.	Ion-beam irradiation, gene identification, and marker-assisted breeding in the development of low-cadmium rice.	Proc. Natl. Acad. Sci. U.S.A.	109(47)	19166-71	2012	LCD1,NRAMP1	NRAMP5, OsNRAMP5, OsNramp5, OsLCD1,OsNramp1, OsNRAMP1, OsNramp6
36337	23164055	Chen H., Jiang S., Zheng J., Lin Y.	Improving panicle exsertion of rice cytoplasmic male sterile line by combination of artificial microRNA and artificial target mimic.	Plant Biotechnol. J.	11(3)	336-43	2013		
36340	23117720	Krattinger S.G., Jordan D.R., Mace E.S., Raghavan C., Luo M.C., Keller B., Lagudah E.S.	Recent emergence of the wheat Lr34 multi-pathogen resistance: insights from haplotype analysis in wheat, rice, sorghum and Aegilops tauschii.	Theor. Appl. Genet.	126(3)	663-72	2013		
36343	22895058	Shimizu T., Lin F., Hasegawa M., Nojiri H., Yamane H., Okada K.	The potential bioproduction of the pharmaceutical agent sakuranetin, a flavonoid phytoalexin in rice.	Bioengineered	3(6)	352-7			
36349	23185238	Li S.W., Yang H., Liu Y.F., Liao Q.R., Du J., Jin D.C.	Transcriptome and gene expression analysis of the rice leaf folder, Cnaphalocrosis medinalis.	PLoS ONE	7(11)	e47401	2012		
36353	23125910	Singh A., Singh V.K., Singh S.P., Pandian R.T., Ellur R.K., Singh D., Bhowmick P.K., Gopala Krishnan S., Nagarajan M., Vinod K.K., Singh U.D., Prabhu K.V., Sharma T.R., Mohapatra T., Singh A.K.	Molecular breeding for the development of multiple disease resistance in Basmati rice.	AoB Plants	2012	pls029	2012	PIKH	Pi-kh, Pi k-h, Pi54, Pi54rh, Pi-k(h), Pik-h, Pikh
36355	23202047	Pons R., Cornejo M.J., Sanz A.	Is ABA involved in tolerance responses to salinity by affecting cytoplasm ion homeostasis in rice cell lines?	Plant Physiol. Biochem.	62	88-94	2013		
36357	23204406	Park C.H., Chen S., Shirsekar G., Zhou B., Khang C.H., Songkumarn P., Afzal A.J., Ning Y., Wang R., Bellizzi M., Valent B., Wang G.L.	The Magnaporthe oryzae effector AvrPiz-t targets the RING E3 ubiquitin ligase APIP6 to suppress pathogen-associated molecular pattern-triggered immunity in rice.	Plant Cell	24(11)	4748-62	2012	KS4,APIP6,PAL1,NAC4	OsKS4, KS4, KSL4, OsKSL4, DTS2, OsDTS2, OsTPS16, TPS16, TPS8, OsTPS8,OsAPIP6,  OsRING382, RING382, IPI7, OsIPI7,OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6,OsNAC4, NAC68, ONAC068, OnNAC4*, OnNAC4, OsNAC4/ONAC068
36358	23121287	Meng Y., Shao C., Wang H., Ma X., Chen M.	Construction of gene regulatory networks mediated by vegetative and reproductive stage-specific small RNAs in rice (Oryza sativa).	New Phytol.	197(2)	441-53	2013		
36359	23161853	Kwon Y.I., Abe K., Osakabe K., Endo M., Nishizawa-Yokoi A., Saika H., Shimada H., Toki S.	Overexpression of OsRecQl4 and/or OsExo1 enhances DSB-induced homologous recombination in rice.	Plant Cell Physiol.	53(12)	2142-52	2012	_,_	OsRecQl4, RecQl4, OsMed34_1, Med34_1 ,OsEXO1, OsExo1, EXO1
36360	23124325	Wu X., Tang D., Li M., Wang K., Cheng Z.	Loose Plant Architecture1, an INDETERMINATE DOMAIN protein involved in shoot gravitropism, regulates plant architecture in rice.	Plant Physiol.	161(1)	317-29	2013	LPA1	OsIDD14, LPA1, IDD14, OsLPA1, ZOS1-06, OsZOS1-06
36361	23220084	Teranishi M., Nakamura K., Furukawa H., Hidema J.	Identification of a phosphorylation site in cyclobutane pyrimidine dimer photolyase of rice.	Plant Physiol. Biochem.	63	24-9	2013		
36362	23261650	Morettini S., Gian? S., Nick P., Morello L., Breviario D.	Two anti-microtubular drugs for two differential responses: a rice cell line resistant to EPC remains susceptible to oryzalin.	Plant Physiol. Biochem.	63	107-14	2013		
36366	23166615	Zhao H., Ma H., Yu L., Wang X., Zhao J.	Genome-wide survey and expression analysis of amino acid transporter gene family in rice (Oryza sativa L.).	PLoS ONE	7(11)	e49210	2012	CAT11,PROT1,RAU1,_,_,_,_,AAP6,CAT7,AAP11B,AAP10B,_,_,AAP11G,AAP12A,AAP10D,CAT4,_,AAP12B,_,LHT2,LHT9,_,_,BH4,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,PUT2,_,CCC1,_,CAT2,PROT3,LHT8,LHT7,PUT1,PUT3,AAP11A,PROT,AAP7C,AAP10A,AAP7A,AAP3,AAP11D,AAP11E,AAP12C,_,AAP11C,AAP10C,RAU4,RAU3,HT,_,_,_,_,_,_,_,LHT4A,AAP7B,_,_,_,_,RAU2,_,AAP11F	OsCAT11,OsProT1, ProT1 ,OsLAX1, OsRAU1, OsAUX1, LAX1, AUX1,OsBAT1 ,OsATL15, ATL15,OsATL11, OsAux/LAX1, OSLAX1,OsATL17, OsSTA19,OsAAP6, OsAAP1, AAP1,OsCAT7,OsAAP11B, OsAAP15, AAP15,OsAAP10B, OsAAP4, AAP4, OsAAP4a, OsAAP4b, OsAAP4c,OsBAT3,OsCAT9,OsAAP11G, OsAAP19, AAP19,OsAAP12A, OsAAP3, AAP3,OsAAP10D, OsAAP6, AAP6, qPC1,OsCAT4,OsBAT5,OsAAP12B, OsAAP18, AAP18,OsCAT6,OsLHT2,OsLHT9, OsLHT4, LHT4,OsATL3,OsATL16, OsSTA21,Bh4, OsBH4, OsATL14, ATL14,OsGAT1,OsGAT3,OsANT1 ,OsANT3,OsATL7,OsATL12,OsCAT1 ,OsCAT3,OsCAT5,OsCAT8,OsANT4, ANT4, FCO8,OsLAT6,OsBAT2,OsLAT2 ,OsLAT3,NAA, OsATL4 ,OsBAT4,OsCAT10,OsBAT7,OsPUT2, OsLAT7 ,Os CCC2, OsCCC2, OsLAT8,Os CCC1, OsCCC1, OsLAT9 ,OsLAX5, OsAUX5, LAX5, AUX5,OsCAT2,OsProT3, ProT3,OsLHT8, OsLHT3, LHT3,OsLHT7, OsLHT5, LHT5,OsPUT1, PUT, OsLAT1 ,OsPUT3, OsPUT3.1, OsPAR1, OsLAT5 ,OsAAP11A, OsAAP16, AAP16,OsProT, ProT, OsProT2, ProT2,OsAAP7C, OsAAP10, AAP10,OsAAP10A, OsAAP17, AAP17,OsAAP7A, OsAAP13, AAP13,OsAAP3, OsAAP9, AAP9,OsAAP11D, OsAAP12, AAP12,OsAAP11E, OsAAP8, AAP8,OsAAP12C, OsAAP2, AAP2,OsLAT4, LAT4,OsAAP11C, OsAAP11, AAP11,OsAAP10C, OsAAP5, AAP5,OsLAX4, OsRAU4, OsAUX4, LAX4, AUX4,OsLAX3, OsRAU3, OsAUX2, LAX3, AUX2, OsAUX3, AUX3, ARF2,OsHT, OsLHT1, LHT1,OsATL5,OsBAT6,OsATL13,OsATL9,OsATL10,OsATL8,OsATL6,OsLHT4A, OsLHT6, LHT6,OsAAP7B, OsAAP14, AAP14, OsAAP14a, OsAAP14b,  OsMBTB9, MBTB9,OsATL2,OsATL1,OsGAT2,OsANT2 ,OsLAX2, OsRAU2, OsAUX3, LAX2, AUX3 ,OsGAT4,OsAAP11F, OsAAP7, AAP7, FCO7
36378	23010327	Steere A.N., Bobst C.E., Zhang D., Pettit S.C., Kaltashov I.A., Huang N., Mason A.B.	Biochemical and structural characterization of recombinant human serum transferrin from rice (Oryza sativa L.).	J. Inorg. Biochem.	116	37-44	2012		
36379	23265324	Zhao J., Wu C., Yuan S., Yin L., Sun W., Zhao Q., Zhao B., Li X.	Kinase activity of OsBRI1 is essential for brassinosteroids to regulate rice growth and development.	Plant Sci.	199-200	113-20	2013		
36384	23184051	Miah G., Rafii M.Y., Ismail M.R., Puteh A.B., Rahim H.A., Asfaliza R., Latif M.A.	Blast resistance in rice: a review of conventional breeding to molecular approaches.	Mol. Biol. Rep.	40(3)	2369-88	2013		
36387	23013333	Zhao F.Y., Han M.M., Zhang S.Y., Wang K., Zhang C.R., Liu T., Liu W.	Hydrogen peroxide-mediated growth of the root system occurs via auxin signaling modification and variations in the expression of cell-cycle genes in rice seedlings exposed to cadmium stress.	J Integr Plant Biol	54(12)	991-1006	2012		
36388	23132589	Hakata M., Kuroda M., Ohsumi A., Hirose T., Nakamura H., Muramatsu M., Ichikawa H., Yamakawa H.	Overexpression of a rice TIFY gene increases grain size through enhanced accumulation of carbohydrates in the stem.	Biosci. Biotechnol. Biochem.	76(11)	2129-34	2012	TIFY11B	OsJAZ4, JAZ4, OsJAZ 10, OsJAZ10, JAZ10, OsTIFY11b
36389	23262183	Liu C., Fukumoto T., Matsumoto T., Gena P., Frascaria D., Kaneko T., Katsuhara M., Zhong S., Sun X., Zhu Y., Iwasaki I., Ding X., Calamita G., Kitagawa Y.	Aquaporin OsPIP1;1 promotes rice salt resistance and seed germination.	Plant Physiol. Biochem.	63	151-8	2013	PIP1A	OsPIP1a, OsPIP1;1, PIP1a, RWC-1, PIP1-1, RWC1, OsPIP1-1, PIP1;1, PIP1-5
36390	23116435	Negr?o S., Almadanim M.C., Pires I.S., Abreu I.A., Maroco J., Courtois B., Gregorio G.B., McNally K.L., Oliveira M.M.	New allelic variants found in key rice SalT-tolerance genes: an association study.	Plant Biotechnol. J.	11(1)	87-100	2013		
36393	23126685	Chen Y.L., Liang H.L., Ma X.L., Lou S.L., Xie Y.Y., Liu Z.L., Chen L.T., Liu Y.G.	An efficient rice mutagenesis system based on suspension-cultured cells.	J Integr Plant Biol	55(2)	122-30	2013		
36394	23203072	Chen X., Wang X., Jin N., Zhou Y., Huang S., Miao Q., Zhu Q., Xu J.	Endpoint visual detection of three genetically modified rice events by loop-mediated isothermal amplification.	Int J Mol Sci	13(11)	14421-33	2012		
36395	23161858	Nishikawa Y., Yamamoto H., Okegawa Y., Wada S., Sato N., Taira Y., Sugimoto K., Makino A., Shikanai T.	PGR5-dependent cyclic electron transport around PSI contributes to the redox homeostasis in chloroplasts rather than CO(2) fixation and biomass production in rice.	Plant Cell Physiol.	53(12)	2117-26	2012	PGR5,_	OsPGR5,PGRL1
36396	23150632	Zhang L., Cheng Z., Qin R., Qiu Y., Wang J.L., Cui X., Gu L., Zhang X., Guo X., Wang D., Jiang L., Wu C.Y., Wang H., Cao X., Wan J.	Identification and characterization of an epi-allele of FIE1 reveals a regulatory linkage between two epigenetic marks in rice.	Plant Cell	24(11)	4407-21	2012	COG1,SPW1,FIE2,MADS27,CLF,FIE1,IEZ1	OsMADS17, MADS17, NMADS3, RMADS213, nmads3,SPW1, spw1, MADS16, OsMADS16,OsFIE2, FIE, OsWD40-153,  OsDWD46, DWD46,OsMADS27, MADS-27a, OsSTA66, OsMADS27a,OsSET24, SDG711, EZ1, OsCLF, OsSDG711,OsFIE1, OsWD40-154, OsEnS-116, OsFIE1/OsWD40-154, WD40-154 ,OsiEZ1, OsSET1, SET1, iEZ1, OsEZ1/OsiEZ1, OsEZ1, EZ1, ez1, OsSET15, SDG718, DLN84, OsDLN84
36398	23147796	Qi P., Lin Y.S., Song X.J., Shen J.B., Huang W., Shan J.X., Zhu M.Z., Jiang L., Gao J.P., Lin H.X.	The novel quantitative trait locus GL3.1 controls rice grain size and yield by regulating Cyclin-T1;3.	Cell Res.	22(12)	1666-80	2012		
36399	22527842	Yamamoto T., Nakamura A., Iwai H., Ishii T., Ma J.F., Yokoyama R., Nishitani K., Satoh S., Furukawa J.	Effect of silicon deficiency on secondary cell wall synthesis in rice leaf.	J. Plant Res.	125(6)	771-9	2012		
36402	23248202	Igarashi K., Kazama T., Motomura K., Toriyama K.	Whole genomic sequencing of RT98 mitochondria derived from Oryza rufipogon and northern blot analysis to uncover a cytoplasmic male sterility-associated gene.	Plant Cell Physiol.	54(2)	237-43	2013	_	orf113
36403	23228240	Wang Y., Guo H., Li H., Zhang H., Miao X.	Identification of transcription factors potential related to brown planthopper resistance in rice via microarray expression profiling.	BMC Genomics	13	687	2012		
36406	23259405	Lu T., Zhu C., Lu G., Guo Y., Zhou Y., Zhang Z., Zhao Y., Li W., Lu Y., Tang W., Feng Q., Han B.	Strand-specific RNA-seq reveals widespread occurrence of novel cis-natural antisense transcripts in rice.	BMC Genomics	13	721	2012		
36408	23151797	Alvim M.N., Ramos F.T., Oliveira D.C., Isaias R.M., Franca M.G.	Aluminium localization and toxicity symptoms related to root growth inhibition in rice (Oryza sativa L.) seedlings.	J. Biosci.	37(6)	1079-88	2012		
36409	23251532	Yang X., Wu F., Lin X., Du X., Chong K., Gramzow L., Schilling S., Becker A., Thei?en G., Meng Z.	Live and let die - the B(sister) MADS-box gene OsMADS29 controls the degeneration of cells in maternal tissues during seed development of rice (Oryza sativa).	PLoS ONE	7(12)	e51435	2012		
36411	23246835	Sun H., Li Y., Feng S., Zou W., Guo K., Fan C., Si S., Peng L.	Analysis of five rice 4-coumarate:coenzyme A ligase enzyme activity and stress response for potential roles in lignin and flavonoid biosynthesis in rice.	Biochem. Biophys. Res. Commun.	430(3)	1151-6	2013	4CL3,4CL1,4CL4,4CL5,4CL2	Os4CL3, Os4CL2, Os4CL, 4CL2, 4CL,Os4CL1, 4-CL, 4-CL. 1,Os4CL4,Os4CL5, 4CL3, Os4CL3,Os4CL2
36413	23231430	Li Z., Hu Q., Zhou M., Vandenbrink J., Li D., Menchyk N., Reighard S., Norris A., Liu H., Sun D., Luo H.	Heterologous expression of OsSIZ1, a rice SUMO E3 ligase, enhances broad abiotic stress tolerance in transgenic creeping bentgrass.	Plant Biotechnol. J.	11(4)	432-45	2013		
36414	23231455	Fang Z., Xia K., Yang X., Grotemeyer M.S., Meier S., Rentsch D., Xu X., Zhang M.	Altered expression of the PTR/NRT1 homologue OsPTR9 affects nitrogen utilization efficiency, growth and grain yield in rice.	Plant Biotechnol. J.	11(4)	446-58	2013	PTR9	OsPTR9, OsNPF8.20, NPF8.20  
36416	23230509	Wakasa Y., Hayashi S., Ozawa K., Takaiwa F.	Multiple roles of the ER stress sensor IRE1 demonstrated by gene targeting in rice.	Sci Rep	2	944	2012	IRE1,BZIP50	OsIRE1, OsIre1,OsbZIP60, bZIP50, OsbZIP50, OsbZIP74, bZIP74, OsbZIP50-S
36418	23203411	Ashkani S., Rafii M.Y., Rahim H.A., Latif M.A.	Genetic dissection of rice blast resistance by QTL mapping approach using an F(3) population.	Mol. Biol. Rep.	40(3)	2503-15	2013		
36421	23342502	Karasawa M.M., Vencovsky R., Silva C.M., Cardim D.C., Bressan Ede A., Oliveira G.C., Veasey E.A.	Comparison of microsatellites and isozymes in genetic diversity studies of Oryza glumaepatula (Poaceae) populations.	Rev. Biol. Trop.	60(4)	1463-78	2012		
36423	23267064	Yoshida A., Sasao M., Yasuno N., Takagi K., Daimon Y., Chen R., Yamazaki R., Tokunaga H., Kitaguchi Y., Sato Y., Nagamura Y., Ushijima T., Kumamaru T., Iida S., Maekawa M., Kyozuka J.	TAWAWA1, a regulator of rice inflorescence architecture, functions through the suppression of meristem phase transition.	Proc. Natl. Acad. Sci. U.S.A.	110(2)	767-72	2013	MADS47,MADS55,G1L5,MADS22	OsMADS47, OsMDP1, MDP, MDP1,OsMADS55, DLN163, OsDLN163,OsG1L5, TAW1, OsTAW1,OsMADS22, RMD1, DLN68, OsDLN68
36424	23270672	Takei N., Takahashi N., Takayanagi T., Ikeda A., Hashimoto K., Takagi M., Hamada T., Saitoh E., Ochiai A., Tanaka T., Taniguchi M.	Antimicrobial activity and mechanism of action of a novel cationic alpha-helical dodecapeptide, a partial sequence of cyanate lyase from rice.	Peptides	42C	55-62	2012		
36425	23236455	Wang Z., Chen Z., Cheng J., Lai Y., Wang J., Bao Y., Huang J., Zhang H.	QTL analysis of Na+ and K+ concentrations in roots and shoots under different levels of NaCl stress in rice (Oryza sativa L.).	PLoS ONE	7(12)	e51202	2012		
36430	23284907	Zhang J., Lu H., Gu W., Wu N., Zhou K., Hu Y., Xin Y., Wang C.	Early mixed farming of millet and rice 7800 years ago in the Middle Yellow River region, China.	PLoS ONE	7(12)	e52146	2012		
36432	23248203	Kahloul S., HajSalah El Beji I., Boulaflous A., Ferchichi A., Kong H., Mouzeyar S., Bouzidi M.F.	Structural, expression and interaction analysis of rice SKP1-like genes.	DNA Res.	20(1)	67-78	2013		
36435	23262107	Mei D.Y., Zhu Y.J., Fan Y.Y.	[Mapping QTL for rice milling and appearance quality traits in indica rice].	Yi Chuan	34(12)	1591-8	2012		
36436	23215967	Winkel A., Colmer T.D., Ismail A.M., Pedersen O.	Internal aeration of paddy field rice (Oryza sativa) during complete submergence---importance of light and floodwater O2.	New Phytol.	197(4)	1193-203	2013		
36439	23326259	Linh le H., Linh T.H., Xuan T.D., Ham le H., Ismail A.M., Khanh T.D.	Molecular Breeding to Improve salt tolerance of Rice (Oryza sativa L.) in the Red River Delta of Vietnam.	Int J Plant Genomics	2012	949038	2012		
36441	23242918	Kouzai Y., Kaku H., Shibuya N., Minami E., Nishizawa Y.	Expression of the chimeric receptor between the chitin elicitor receptor CEBiP and the receptor-like protein kinase Pi-d2 leads to enhanced responses to the chitin elicitor and disease resistance against Magnaporthe oryzae in rice.	Plant Mol. Biol.	81(3)	287-95	2013		
36443	23205731	Thurber C.S., Jia M.H., Jia Y., Caicedo A.L.	Similar traits, different genes? Examining convergent evolution in related weedy rice populations.	Mol. Ecol.	22(3)	685-98	2013		
36444	23341744	Liu S., Wang F., Gao L.J., Li J.H., Li R.B., Gao H.L., Deng G.F., Yang J.S., Luo X.J.	Genetic analysis and fine mapping of LH1 and LH2, a set of complementary genes controlling late heading in rice (Oryza sativa L.).	Breed. Sci.	62(4)	310-9	2012	HD3A,SE1,LH1,LH2,EF1	Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, OsHd1,  Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,,,Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 
36448	23253602	Zhang Y., Zhang G., Xiao N., Wang L., Fu Y., Sun Z., Fang R., Chen X.	The rice 'nutrition response and root growth' (NRR) gene regulates heading date.	Mol Plant	6(2)	585-8	2013		
36449	23220695	Qin P., Tu B., Wang Y., Deng L., Quilichini T.D., Li T., Wang H., Ma B., Li S.	ABCG15 encodes an ABC transporter protein, and is essential for post-meiotic anther and pollen exine development in rice.	Plant Cell Physiol.	54(1)	138-54	2013	ABCG15	OsABCG15, PDA, PDA1, OsABCG15/PDA1
36451	23285082	Pan X., Zhang Q., Yan W., Jia M., Jackson A., Li X., Jia L., Huang B., Xu P., Correa-Victoria F., Li S.	Development of genetic markers linked to straighthead resistance through fine mapping in rice (Oryza sativa L.).	PLoS ONE	7(12)	e52540	2012		
36452	23083333	Yang J., Lee S., Hang R., Kim S.R., Lee Y.S., Cao X., Amasino R., An G.	OsVIL2 functions with PRC2 to induce flowering by repressing OsLFL1 in rice.	Plant J.	73(4)	566-78	2013	HD3A,LFL1,EF1,VP1,LC2,ABI3,EMF2B,LFL2	Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,OsLFL1, OsSTA29, STA29,Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,Vp1* (OSVP1), OsVP1, OsVp1, Vp1, ABI3, OsABI3, OsLFL4, OsVp-1, OSVP1,OsLC2, OsVIL2, VIL2, OsVIL3,OsLFL2, LFL2, OsIDEF1, IDEF1, OsABI3,OsEMF2b, EMF2b, GW9, OsGW9, GW9/OsEMF2b ,OsLFL2, OsLFL3, LFL3
36453	23220823	Qin C., Li Y., Gan J., Wang W., Zhang H., Liu Y., Wu P.	Osdgl1, a homolog of an oligosaccharyltransferase complex subunit, is involved in N-glycosylation and root development in rice.	Plant Cell Physiol.	54(1)	129-37	2013	_	OsDGL1
36457	23202132	You J., Zong W., Li X., Ning J., Hu H., Li X., Xiao J., Xiong L.	The SNAC1-targeted gene OsSRO1c modulates stomatal closure and oxidative stress tolerance by regulating hydrogen peroxide in rice.	J. Exp. Bot.	64(2)	569-83	2013	BOC1,_,_,_,TWI1,ONAC2	OsSRO1c, SRO1c, OsBOC1,OsSRO1b, SRO1b,OsSRO1d, SRO1d,OsSRO1e, SRO1e,OsSRO1a, SRO1a, OsTWI1, RCD1, OsRCD1,SNAC1, snac1, OsNAC9, ONAC002, ONAC2, ONAC033, ONAC33, ONAC043, ONAC43, ONAC044, ONAC44, OsNAC19, NAC19, SNAC1/ONAC002, OsSNAC1, OsNAC9, OsNAC1
36458	23251677	El-Kereamy A., Bi Y.M., Ranathunge K., Beatty P.H., Good A.G., Rothstein S.J.	The rice R2R3-MYB transcription factor OsMYB55 is involved in the tolerance to high temperature and modulates amino acid metabolism.	PLoS ONE	7(12)	e52030	2012	_,GAD3,PL,GLN1;2	GAT1,OsGAD3,OsMYB55, OsMYB-2, MYB55, MYB-2, OsPL, Os2R_MYB60, 2R_MYB60,OsGLN1;2, GSr, RGS8, OsGS1;2, GS1;2, GS1, OsGS1-2, GS1-2, OsGS1.2, GS1.2
36459	23221779	Trivedi D.K., Gill S.S., Yadav S., Tuteja N.	Genome-wide analysis of glutathione reductase (GR) genes from rice and Arabidopsis.	Plant Signal Behav	8(2)		2012		
36465	23262670	Wadekar H.B., Sahi V.P., Morita E.H., Abe S.	MKRN expression pattern during embryonic and post-embryonic organogenesis in rice (Oryza sativa L. var. Nipponbare).	Planta	237(4)	1083-95	2013		
36467	23341747	Endo T., Yamaguchi M., Kaji R., Nakagomi K., Kataoka T., Yokogami N., Nakamura T., Ishikawa G., Yonemaru J., Nishio T.	Close linkage of a blast resistance gene, Pias(t), with a bacterial leaf blight resistance gene, Xa1-as(t), in a rice cultivar 'Asominori'.	Breed. Sci.	62(4)	334-9	2012		
36468	23376844	Zhang L., Shi J., Jiang D., Stupak J., Ou J., Qiu Q., An N., Li J., Yang D.	Expression and characterization of recombinant Human alpha-antitrypsin in transgenic rice seed.	J. Biotechnol.	164(2)	300-8	2012		
36471	23313793	Yadav D.K., Shukla D., Tuteja N.	Rice heterotrimeric G-protein alpha subunit (RGA1): in silico analysis of the gene and promoter and its upregulation under abiotic stress.	Plant Physiol. Biochem.	63	262-71	2013	D1	d1, GPA1, GA1, OsGA1, RGA1, dwf1, XA7, RGA, D1/RGA1, D89, TGW5, OsTGW5, SRG5, OsSRG5
36475	23210861	Feng B.H., Yang Y., Shi Y.F., Shen H.C., Wang H.M., Huang Q.N., Xu X., L? XG., Wu J.L.	Characterization and Genetic Analysis of a Novel Rice Spotted-leaf Mutant HM47 with Broad-spectrum Resistance to Xanthomonas oryzae pv. oryzae.	J Integr Plant Biol	55(5)	473-83	2013	PAL1,SPLHM47,PR10A,POX22.3,POX3006	OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6,splHM47, HM47, OsPelo, OsPELO, PELO, LML1, OsLML1,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,POX22.3, OSPER, OsPOX, POX, Pir3, prx111, POX22, OsPOX1, POX1, OsPOX22.3, OsPR9, PR9,POX3006, prx114, Osprx114, PO-C1, POC-1, POC1, OsPOC1, Prx14, OsPrx14, POD3006, OsPOD3006
36477	23220350	Shao G., Tang S., Chen M., Wei X., He J., Luo J., Jiao G., Hu Y., Xie L., Hu P.	Haplotype variation at Badh2, the gene determining fragrance in rice.	Genomics	101(2)	157 162	2013		
36479	23300690	Tang X., Han F., Zhao K., Xu Y., Wu X., Wang J., Jiang L., Shi W.	A 90-day dietary toxicity study of genetically modified rice T1C-1 expressing Cry1C protein in Sprague Dawley rats.	PLoS ONE	7(12)	e52507	2012		
36480	23256151	Zhang H., Xu C., He Y., Zong J., Yang X., Si H., Sun Z., Hu J., Liang W., Zhang D.	Mutation in CSA creates a new photoperiod-sensitive genic male sterile line applicable for hybrid rice seed production.	Proc. Natl. Acad. Sci. U.S.A.	110(1)	76-81	2013	MST8,MYB8,CSA2,CSA	OsMST8, OSMST8, OsSTP8, STP8,OsMYB8, OsMYB305, MYB305, Os2R_MYB9, 2R_MYB9 ,OsCSA2, MYB5, OsMyb5, OSMYB5, Os2R_MYB58, 2R_MYB58,csa, OsCSA
36483	23285081	Zhang Z.H., Wang K., Guo L., Zhu Y.J., Fan Y.Y., Cheng S.H., Zhuang J.Y.	Pleiotropism of the photoperiod-insensitive allele of Hd1 on heading date, plant height and yield traits in rice.	PLoS ONE	7(12)	e52538	2012	SE1	Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, OsHd1,  Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21
36490	23233857	Xu Y., Zhou X.	Role of Rice Stripe Virus NSvc4 in Cell-to-Cell Movement and Symptom Development in Nicotiana benthamiana.	Front Plant Sci	3	269	2012		
36498	23135854	Batlang U., Baisakh N., Ambavaram M.M., Pereira A.	Phenotypic and physiological evaluation for drought and salinity stress responses in rice.	Methods Mol. Biol.	956	209-25	2013		
36499	23469243	Huda K.M., Banu M.S., Pathi K.M., Tuteja N.	Reproductive organ and vascular specific promoter of the rice plasma membrane Ca2+ATPase mediates environmental stress responses in plants.	PLoS ONE	8(3)	e57803	2013	ACA11	osACA11, OsACA6, OsACA5, OsPM4ATP8
36500	23457591	Zhou W.W., Liang Q.M., Xu Y., Gurr G.M., Bao Y.Y., Zhou X.P., Zhang C.X., Cheng J., Zhu Z.R.	Genomic insights into the Glutathione S-transferase gene family of two rice planthoppers, Nilaparvata lugens (St?l) and Sogatella furcifera (Horv?th) (Hemiptera: Delphacidae).	PLoS ONE	8(2)	e56604	2013		
36501	23349140	Suzuki Y., Makino A.	Translational downregulation of RBCL is operative in the coordinated expression of Rubisco genes in senescent leaves in rice.	J. Exp. Bot.	64(4)	1145-52	2013		
36503	23637814	Su Z.Z., Mao L.J., Li N., Feng X.X., Yuan Z.L., Wang L.W., Lin F.C., Zhang C.L.	Evidence for Biotrophic Lifestyle and Biocontrol Potential of Dark Septate Endophyte Harpophora oryzae to Rice blast disease.	PLoS ONE	8(4)	e61332	2013	WRKY45	OsWRKY45, OsWRKY45-1, OsWRKY45-2, WRKY45-1, WRKY45-2
36504	23244200	Wang Y.D., Wang X., Ngai S.M., Wong Y.S.	Comparative proteomics analysis of selenium responses in selenium-enriched rice grains.	J. Proteome Res.	12(2)	808-20	2013		
36505	23315878	Jiang H., Zhang J., Wang J., Xia M., Zhu S., Cheng B.	RNA interference-mediated silencing of the starch branching enzyme gene improves amylose content in rice.	Genet. Mol. Res.	12(AOP)		2013		
36506	23385589	Niu N., Liang W., Yang X., Jin W., Wilson Z.A., Hu J., Zhang D.	EAT1 promotes tapetal cell death by regulating aspartic proteases during male reproductive development in rice.	Nat Commun	4	1445	2013	AP37 ,UDT1,TDR,API5,RADC1,_,EAT1,PTC1,GAMYB,MSP1,CP1	OsAP37,Udt1, bHLH164, OsUDT1, OsbHLH164 ,tdr, OsbHLH005, bHLH005, OsbHLH5, bhlh5, TDR1, OsTDR, OsTDR1, OsMYC5, MYC5,API5, Os API5, OsAPI5,OsAP25, Radc1, OsRADC1, AP25,OsAP19,OsEAT1, OsbHLH141, EAT1/DTD1, bHLH141, DTD1, DTD, DLN120, OsDLN120,OsMS1, tms9-1, OsPTC1, MS1, TMS9-1, OsTMS9-1,OsGAMYB, GAM1, OsGAMyb, Os-MYBGA, Os GAMYB, OsMYBGA, MYBGA, Os2R_MYB15, 2R_MYB15 ,Msp1, OsMSP1, OsTMS15, TMS15,OsCP1, Os CP1
36507	23333965	Hirose F., Inagaki N., Takano M.	Differences and similarities in the photoregulation of gibberellin metabolism between rice and dicots.	Plant Signal Behav	8(3)		2013	GA2OX9,PHYB,PHYA,GA2OX7,LHD3,SBI,CRY1B,CRY1A,PRL5,CRY2,GA2OX6,GA2OX5,SD1	OsGA2ox9, GA2ox7, 2-ODD35, Os2-ODD35, 2ODD35, Os2ODD35,phyB, PHYB1, OsPHYB, OsphyB, OsYHB, YHB, OsPHYB/OsYHB,phyA, PHYA* (phyA), PHYA*, Phya, PHY18, phy 18, OsPHYA ,OsGA2ox7,PHYC, OsPHYC, OsPHYCa, OsPHYCb, OsLHD3,GA2OX4, OsGA2ox4, ga2ox 4, OsGA2ox-4, OsSBI,OsCRY1b, OsCRY2, CRY1b, CRY1, OsCCT1b, CCT1b,OsCRY1a, OsCRY1, CRY1a, CRY2, OsCCT1a, CCT1a,OsGA20ox4, ga20ox4, GA20ox2, Prl5, Prl5/GA20ox4, OsPrl5,OsCRY2,OsGA2ox6,OsGA2ox5, 2-ODD32, Os2-ODD32, 2ODD32, Os2ODD32,sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2, OsPHQ1, OsPHq1, PHq1
36508	23322345	Luan J., Liu T., Luo W., Liu W., Peng M., Li W., Dai X., Liang M., Chen L.	Mitochondrial DNA genetic polymorphism in thirteen rice cytoplasmic male sterile lines.	Plant Cell Rep.	32(4)	545-54	2013	RPS2,_,_,RPS1,_,_	rps2, rps2a, rps2b,ORF79, orf79,orf224, orf224a, orf224b,rps1, rps1a, rps1b, rps1-1,atp6, N-atp6, B-ATP6, B-atp6, atp6-1,cox3, coxIII, cox3a, cox3b, cox3c
36510	23577102	Do P.T., Degenkolbe T., Erban A., Heyer A.G., Kopka J., K?hl KI., Hincha D.K., Zuther E.	Dissecting Rice Polyamine Metabolism under Controlled Long-Term Drought Stress.	PLoS ONE	8(4)	e60325	2013		
36511	23638363	Chern M., Bai W., Chen X., Canlas P.E., Ronald P.C.	Reduced expression of Glycolate oxidase leads to enhanced disease resistance in rice.	PeerJ	1	e28	2013		
36518	23555750	Mou S., Liu Z., Guan D., Qiu A., Lai Y., He S.	Functional Analysis and Expressional Characterization of Rice Ankyrin Repeat-Containing Protein, OsPIANK1, in Basal Defense against Magnaporthe oryzae Attack.	PLoS ONE	8(3)	e59699	2013	AOS2,_,PAL1,NH1,WRKY13,PR1B,PR5	OsAOS2, CYP74A2, OsAOS, OsAOS1,OsPIANK1,OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6,OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2, DLN5, OsDLN5,  OsBTBA1, BTBA1,OsWRKY13,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1, OsPR1a, PR1a,OsPR5, Pir2, PR-5, PR5-1
36520	23319637	Magome H., Nomura T., Hanada A., Takeda-Kamiya N., Ohnishi T., Shinma Y., Katsumata T., Kawaide H., Kamiya Y., Yamaguchi S.	CYP714B1 and CYP714B2 encode gibberellin 13-oxidases that reduce gibberellin activity in rice.	Proc. Natl. Acad. Sci. U.S.A.	110(5)	1947-52	2013	CYP714B2,EUI1,CYP714C2,CYP714C1,CYP714C3,CYP714B1	OsCYP714B2,eui1, GA16,17ox, CYP714D1, EUI, CYP714D1/EUI, OsEUI, LG5, OsLG5,CYP714C2,CYP714C1,CYP714C3,  OsRING155, RING155,OsCYP714B1
36525	23415326	Saad A.S., Li X., Li H.P., Huang T., Gao C.S., Guo M.W., Cheng W., Zhao G.Y., Liao Y.C.	A rice stress-responsive NAC gene enhances tolerance of transgenic wheat to drought and salt stresses.	Plant Sci.	203-204	33-40	2013		
36528	23291755	Lang G.H., Kagiya Y., Ohnishi-Kameyama M., Kitta K.	Evaluation of extraction solutions for biochemical analyses of the proteins in rice grains.	Biosci. Biotechnol. Biochem.	77(1)	126-31	2013		
36529	23403394	Huang S., Shingaki-Wells RN., Taylor N.L., Millar A.H.	The rice mitochondria proteome and its response during development and to the environment.	Front Plant Sci	4	16	2013		
36530	23308094	Xie G., Yang B., Xu Z., Li F., Guo K., Zhang M., Wang L., Zou W., Wang Y., Peng L.	Global identification of multiple OsGH9 family members and their involvement in cellulose crystallinity modification in rice.	PLoS ONE	8(1)	e50171	2013	GH9B6,GH9B17,_,GH9B11,GH9B13,GH9C2,GH9C4,GH9B10,GH9B8,GH9B12,GH9B2,GH9B14,GH9B4,GH9B9,GH9B5,GH9B7,GH9B18,GH9A3,GH9C1,GH9B1,CEL9D,_,GH9B16,GH9B3,CESA1,CESA8,CESA3,CEL9A	OsGH9B6,OsGH9B17,OsGLU3, OsGH9A2, GLU3, GH9A2,OsGH9B11,OsGH9B13,OsGH9C2,OsGH9C4,OsGH9B10,OsGH9B8,OsGH9B12,OsGH9B2,OsGH9B14,OsGH9B4,OsGH9B9,OsGH9B5,OsGH9B7,OsGH9B18,OsGH9A3,OsGH9C1, RHC, OsRHC,OsGH9B1,OsCel9D, Cel9D, OsGLU1, OsGH9A1, GH9A1,OsGH9B15, OsGLU14, GH9B15, GLU14,OsGH9B16,OsGH9B3,OsCesA1, OsCesA-1, OsCESA1, OS_CESA01, CesA1,OsCesA8, OsCESA8, OS_CESA08, CesA8,OsCesA3, OsCESA3, OS_CESA03,OsCel9A, OsGH9C3, GH9C3, OsGLU5, Cel9A 
36531	23526955	Zhang X., Han D., Zeng Q., Duan Y., Yuan F., Shi J., Wang Q., Wu J., Huang L., Kang Z.	Fine Mapping of Wheat Stripe Rust Resistance Gene Yr26 Based on Collinearity of Wheat with Brachypodium distachyon and Rice.	PLoS ONE	8(3)	e57885	2013		
36533	23292878	Sharma R., De Vleesschauwer D., Sharma M.K., Ronald P.C.	Recent advances in dissecting stress-regulatory crosstalk in rice.	Mol Plant	6(2)	250-60	2013		
36535	23299421	Liu B., Li J.F., Ao Y., Li Z., Liu J., Feng D., Qi K., He Y., Zeng L., Wang J., Wang H.B.	OsLYP4 and OsLYP6 play critical roles in rice defense signal transduction.	Plant Signal Behav	8(2)		2013	CEBIP,CERK1,_,LYP6	CEBiP, Os-LYP1, LYP1, OsCEBiP,OsCERK1, OsLysM-RLK9, Os-CERK1, Os-LysM-RLK9, OsLysMRLK9, OsCERK1/OsLYK9, OsLYK9, LYK9,LYP4, Os-LYP4, OsLYP4,Os-LYP6, OsLYP6
36536	23220939	Luo Q., Tang D., Wang M., Luo W., Zhang L., Qin B., Shen Y., Wang K., Li Y., Cheng Z.	The Role of Osmsh5 in Crossover Formation during Rice Meiosis.	Mol Plant	6(3)	729-42	2013	ZIP4,PAIR3,PAIR2,AM1,ZEP1,RAD21-4,RMC1,HEI10,MSH5	OsZIP4, SPO22, OsSPO22,,Pair2, OsPAIR2, OsASY1,OsAM1, SWI1, Osam1,OsZEP1,OsRad21-4, REC8, OsREC8, OsRAD21-4,MER3, mer3, OsMER3, RCK, OsRCK, Os-MER3,HEI10A, HEI10B, OsHEI10,  OsRING434, RING434,OsMSH5
36537	23536906	Zhang T., Zhao X., Huang L., Liu X., Zong Y., Zhu L., Yang D., Fu B.	Tissue-specific transcriptomic profiling of Sorghum propinquum using a rice genome array.	PLoS ONE	8(3)	e60202	2013		
36538	23613915	Qin P., Wang Y., Li Y., Ma B., Li S.	Analysis of cytoplasmic effects and fine-mapping of a genic male sterile line in rice.	PLoS ONE	8(4)	e61719	2013		
36539	23383126	Chen H., Kobayashi K., Miyao A., Hirochika H., Yamaoka N., Nishiguchi M.	Both OsRecQ1 and OsRDR1 are required for the production of small RNA in response to DNA-damage in rice.	PLoS ONE	8(1)	e55252	2013		
36540	22927237	Qi Y., Chen L., He X., Jin Q., Zhang X., He Z.	Marker-free, tissue-specific expression of Cry1Ab as a safe transgenic strategy for insect resistance in rice plants.	Pest Manag. Sci.	69(1)	135-41	2013		
36541	23386349	Katsube-Tanaka T.	Capillary electrophoresis of seed storage proteins: the separation and identification of microheterogeneous rice glutelin subunits.	Methods Mol. Biol.	984	253-61	2013		
36549	23349143	Adachi S., Nakae T., Uchida M., Soda K., Takai T., Oi T., Yamamoto T., Ookawa T., Miyake H., Yano M., Hirasawa T.	The mesophyll anatomy enhancing CO2 diffusion is a key trait for improving rice photosynthesis.	J. Exp. Bot.	64(4)	1061-72	2013		
36550	23371950	Ohmori Y., Tanaka W., Kojima M., Sakakibara H., Hirano H.Y.	WUSCHEL-RELATED HOMEOBOX4 is involved in meristem maintenance and is negatively regulated by the CLE gene FCP1 in rice.	Plant Cell	25(1)	229-41	2013	TAB1,QHB,FON2,_,WOX4,OSH1,NAL2,GL1,WOX5,CLE402	Os WUS, WUS, OsWOX1, WOX1, OsWUS, OsTAB, TAB1/WUS, MOC3, MOC3/OsWUS, SRT1, MOC3/TAB1/SRT1, DC1, OsDC1, DAP1, OsDAP1,OsQHB, OsWOX9, WOX9, WOX5, Os WOX5, OsWOX5, QHB/OsWOX9,fon2, OsFON2, FON4, OsFON4, FON2/FON4, TG1,FCP2,OsWOX4, Os WOX4,OSKN1, Oskn1, OsKN1, OSH1/Oskn1, HB75,nal2, nal3, cul2, OsWOX3A, WOX3A, Os NS, NS, OsNS, OsWOX3, OsNS1/OsNS2, OsPRS,gl1, NUDA/GL-1, NUDA/GL1, NUDA, GL-1, OsWOX3B, OsWOX2, OsWOX3, Os WOX3, WOX3B, WOX2, WOX3, LSY1, OsLSY1, DEP, OsDEP,OsWOX2, Os WOX2, WOX2, OsWOX5, OsWOX2L, WOX2L,FCP1,OsFCP1,  FCP1/Os CLE402, Os CLE402, OsCLE402
36552	23292790	Zhou M., Li D., Li Z., Hu Q., Yang C., Zhu L., Luo H.	Constitutive expression of a miR319 gene alters plant development and enhances salt and drought tolerance in transgenic creeping bentgrass.	Plant Physiol.	161(3)	1375-91	2013	_,PCF5,MIR319A,PCF7,PCF8,PCF6	OsTCP14,OsPCF5,OsmiR319a, Osa-miR319a, osa-MIR319aosa-miR319a osa-miR319a-3p osa-miR319a-3p.2-3p,OsPCF7,OsPCF8,OsPCF6
36559	23344857	Wang Q., Li J., Hu L., Zhang T., Zhang G., Lou Y.	OsMPK3 positively regulates the JA signaling pathway and plant resistance to a chewing herbivore in rice.	Plant Cell Rep.	32(7)	1075-84	2013		
36560	23319643	Cui X., Jin P., Cui X., Gu L., Lu Z., Xue Y., Wei L., Qi J., Song X., Luo M., An G., Cao X.	Control of transposon activity by a histone H3K4 demethylase in rice.	Proc. Natl. Acad. Sci. U.S.A.	110(5)	1953-8	2013	KARMA,LINE1,_	Karma,LINE1,JMJ703
36562	23329372	Ho S.L., Huang L.F., Lu C.A., He S.L., Wang C.C., Yu S.P., Chen J., Yu S.M.	Sugar starvation- and GA-inducible calcium-dependent protein kinase 1 feedback regulates GA biosynthesis and activates a 14-3-3 protein to confer drought tolerance in rice seedlings.	Plant Mol. Biol.	81(4-5)	347-61	2013		
36563	23299424	Onda Y., Kawagoe Y.	P5-type sulfhydryl oxidoreductase promotes the sorting of proteins to protein body I in rice endosperm cells.	Plant Signal Behav	8(2)		2013		
36564	23356873	Huang S., Jacoby R.P., Shingaki-Wells RN., Li L., Millar A.H.	Differential induction of mitochondrial machinery by light intensity correlates with changes in respiratory metabolism and photorespiration in rice leaves.	New Phytol.	198(1)	103-15	2013		
36566	23320078	Lee H.Y., Seo J.S., Cho J.H., Jung H., Kim J.K., Lee J.S., Rhee S., Do Choi Y.	Oryza sativa COI homologues restore jasmonate signal transduction in Arabidopsis COI1-1 mutants.	PLoS ONE	8(1)	e52802	2013	COI1,TIFY8,COI1B,TIFY6B,TIFY10B,COI2,TIFY10C,TIFY6A,TIFY11B,TIFY11C,EG2,TIFY9,TIFY11A,TIFY11D,TIFY10A	OsCOI1a, OsCOI1, Os_F0728, COI1a, F0728,  OsFBL4, FBL4,OsJAZ12, OsTIFY8, OsSTA75,OsCOI1b, COI1b, OsCOI1H, COI1H, OsFbox260, Fbox260, Os_F0646,  OsFBL23, FBL23, OsCOl-1, COl-1,OsJAZ8, JAZ8, OsJAZ 4, OsJAZ4, JAZ4, OsTIFY6b, OsJAZ4-2, JAZ4-2. OsJAZ3, JAZ3,OsJAZ6, OsJAZ 7, OsJAZ7, OsTIFY10B, JAZ6, JAZ7,OsCOI2,OsJAZ7, JAZ7, OsJAZ 8, OsJAZ8, Os-JAZ8, JAZ8, OsTIFY10c, OsTIFY10c/OsJAZ8,OsJAZ9, OsJAZ 3, OsJAZ3, JAZ9, JAZ3, OsTIFY6a,OsJAZ4, JAZ4, OsJAZ 10, OsJAZ10, JAZ10, OsTIFY11b,OsJAZ2, JAZ2, OsJAZ 11, OsJAZ11, Os-JAZ11, JAZ11, OsTIFY11c, OsJAZ1, JAZ1,OsTIFY3, OsJAZ10, OsJAZ 1, OsJAZ1, JAZ1, EG2/OsJAZ1, EG2, JAZ1/EG2,OsJAZ11, OsJAZ5, OsTIFY9, JAZ11, JAZ5, JAZ11/TIFY9 ,OsJAZ3, JAZ3, OsJAZ 9, OsJAZ9, Os-JAZ9, JAZ9, OsTIFY11a, OsJAZ6, JAZ6,OsTIFY11d, OsJAZ1, JAZ1, OsJAZ 12, OsJAZ12, JAZ12,OsJAZ5, JAZ5, JAZ6, OsJAZ6, OsTIFY10A
36567	23303719	He Q., Chen L., Xu Y., Yu W.	Identification of centromeric and telomeric DNA-binding proteins in rice.	Proteomics	13(5)	826-32	2013	GEBP3	OsGeBP3, GeBP3
36568	23544090	Wei T., Ou B., Li J., Zhao Y., Guo D., Zhu Y., Chen Z., Gu H., Li C., Qin G., Qu L.J.	Transcriptional Profiling of Rice Early Response to Magnaporthe oryzae Identified OsWRKYs as Important Regulators in Rice Blast Resistance.	PLoS ONE	8(3)	e59720	2013		
36574	23463009	Guo S., Xu Y., Liu H., Mao Z., Zhang C., Ma Y., Zhang Q., Meng Z., Chong K.	The interaction between OsMADS57 and OsTB1 modulates rice tillering via DWARF14.	Nat Commun	4	1566	2013	D14,FC1,MADS57,MIR444A	d14(d10), dwf13, d10, d14, D88, HTD2, OsHTD2, OsD14, qPPB3, D88/D14, HTD4,fc1, OsTB1, tb1, OsTB1/FC1, Os TB1, TB1, OsFC1, MP3, OsMP3,OsMADS57, MADS-57,OsMIR444a, osa-MIR444a, miR444aosa-miR444a osa-miR444a-3p.1 osa-miR444a-3p.2 osa-miR444a-5p
36576	23324168	Tsuji H., Nakamura H., Taoka K., Shimamoto K.	Functional diversification of FD transcription factors in rice, components of florigen activation complexes.	Plant Cell Physiol.	54(3)	385-97	2013	GF14B,BZIP55,HD3A,BZIP69,BZIP24,BZIP77,BZIP56,BZIP54,RAP1A	GF14b, OsGF14b, 14-3-3b,OsbZIP55, OsFD2,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,OsbZIP69, OsFD4, FD4,OsbZIP24, OsFD3, FD3, bZIP24/OsFD3,OsbZIP77, OsFD1, FD1,OsbZIP56, OsFD5,OsbZIP54, OsFD6,OsMADS15, FDRMADS3, RMADS215, MADS15, DEP
36578	23351381	Liu A.L., Zou J., Liu C.F., Zhou X.Y., Zhang X.W., Luo G.Y., Chen X.B.	Over-expression of OsHsfA7 enhanced salt and drought tolerance in transgenic rice.	BMB Rep	46(1)	31-6	2013	HSFA7	OsHsfA7, OsHsf-01, HSFA6B, HSF01, OsHSF1, HSF1, OsEnS-9, OsHsfA7a, HsfA7a 
36579	23453017	Zhao X., Li L.	Comparative analysis of microRNA promoters in Arabidopsis and rice.	Genomics, proteomics & bioinformatics	11(1)	56-60	2013		
36581	23134061	Shi M., Xie Y., Zheng Y., Wang J., Su Y., Yang Q., Huang S.	Oryza sativa actin-interacting protein 1 is required for rice growth by promoting actin turnover.	Plant J.	73(5)	747-60	2013		
36582	23596448	Chiniquy D., Varanasi P., Oh T., Harholt J., Katnelson J., Singh S., Auer M., Simmons B., Adams P.D., Scheller H.V., Ronald P.C.	Three Novel Rice Genes Closely Related to the Arabidopsis IRX9, IRX9L, and IRX14 Genes and Their Roles in Xylan Biosynthesis.	Front Plant Sci	4	83	2013	IRX9,IRX14,_	OsIRX9, OsGT43C/OsIRX9, OsGT43C,OsIRX14, OsGT43J, GT43J, OsGT43J/OsIRX14,OsIRX9L, OsGT43F/OsIRX9L, OsGT43F
36585	23204502	Wang N., Long T., Yao W., Xiong L., Zhang Q., Wu C.	Mutant Resources for the Functional Analysis of the Rice Genome.	Mol Plant	6(3)	596-604	2013		
36590	23290459	Liu Y., Yu L., Tong J., Ding J., Wang R., Lu Y., Xiao L.	tiller number is altered in the ascorbic acid-deficient rice suppressed for L-Galactono-1,4-lactone dehydrogenase.	J. Plant Physiol.	170(4)	389-96	2013		
36592	23299411	Sakai H., Lee S.S., Tanaka T., Numa H., Kim J., Kawahara Y., Wakimoto H., Yang C.C., Iwamoto M., Abe T., Yamada Y., Muto A., Inokuchi H., Ikemura T., Matsumoto T., Sasaki T., Itoh T.	Rice Annotation Project Database (RAP-DB): an integrative and interactive database for rice genomics.	Plant Cell Physiol.	54(2)	e6	2013		
36593	23416494	Kamrul Huda KM., Yadav S., Akhter Banu MS., Trivedi D.K., Tuteja N.	Genome-wide analysis of plant-type II Ca(2+)ATPases gene family from rice and Arabidopsis: potential role in abiotic stresses.	Plant Physiol. Biochem.	65	32-47	2013		
36595	23638098	Singh A., Kanwar P., Pandey A., Tyagi A.K., Sopory S.K., Kapoor S., Pandey G.K.	Comprehensive Genomic Analysis and Expression Profiling of Phospholipase C Gene Family during Abiotic Stresses and Development in Rice.	PLoS ONE	8(4)	e62494	2013	NPC3,PIPLC1,NPC5,PLC2,NPC1,NPC2,PLC3,NPC4,PLC4	OsNPC4, OsNPC3, NPC4,OsPI-PLC1, PI-PLC1, OsPLC1, PLC1, OsC2DP69, C2DP69,OsNPC6, OsNPC5, NPC6,OsPLC2, OsC2DP30, C2DP30,OsNPC1,OsNPC2,OsPLC3, OsC2DP82, C2DP82,OsNPC3, OsNPC4, NPC3,OsPLC4, OsC2DP41, C2DP41
36596	23146214	Sakamoto T., Morinaka Y., Inukai Y., Kitano H., Fujioka S.	Auxin signal transcription factor regulates expression of the brassinosteroid receptor gene in rice.	Plant J.	73(4)	676-88	2013		
36597	23357425	Pang J., Dong M., Li N., Zhao Y., Liu B.	Functional characterization of a rice de novo DNA methyltransferase, OsDRM2, expressed in Escherichia coli and yeast.	Biochem. Biophys. Res. Commun.	432(1)	157-62	2013		
36604	23135845	Gao J.P., Lin H.X.	QTL analysis and map-based cloning of salt tolerance gene in rice.	Methods Mol. Biol.	956	69-82	2013		
36605	23460903	Coskun D., Britto D.T., Jean Y.K., Kabir I., Tolay I., Torun A.A., Kronzucker H.J.	K? efflux and retention in response to NaCl stress do not predict salt tolerance in contrasting genotypes of rice (Oryza sativa L.).	PLoS ONE	8(2)	e57767	2013		
36610	23333982	Verma D., Ansari M.W., Agrawal G.K., Rakwal R., Shukla A., Tuteja N.	In vitro selection and field responses of somaclonal variant plants of rice cv. PR113 for drought tolerance.	Plant Signal Behav	8(4)		2013		
36616	23400829	Liu Y., Liu B., Zhu X., Yang J., Bordeos A., Wang G., Leach J.E., Leung H.	Fine-mapping and molecular marker development for Pi56(t), a NBS-LRR gene conferring broad-spectrum resistance to Magnaporthe oryzae in rice.	Theor. Appl. Genet.	126(4)	985-98	2013	PI56	Pi56, qBR9.1, Pi56(t)
36618	23385369	Fang C., Zhuang Y., Xu T., Li Y., Li Y., Lin W.	Changes in rice allelopathy and rhizosphere microflora by inhibiting rice phenylalanine ammonia-lyase gene expression.	J. Chem. Ecol.	39(2)	204-12	2013	PAL1	OsPAL, Pal1*, Pal1, PAL, Pal_1, PalI, PAL2, OsPAL01, PAL01, OSPAL, CP-1, GP-1, OsPAL1, PAL3, OsPAL3
36619	23289725	Takagi H., Abe A., Yoshida K., Kosugi S., Natsume S., Mitsuoka C., Uemura A., Utsushi H., Tamiru M., Takuno S., Innan H., Cano L.M., Kamoun S., Terauchi R.	QTL-seq: rapid mapping of quantitative trait loci in rice by whole genome resequencing of DNA from two bulked populations.	Plant J.	74(1)	174-83	2013		
36620	23443969	Goswami A., Banerjee R., Raha S.	Drought resistance in rice seedlings conferred by seed priming : Role of the anti-oxidant defense mechanisms.	Protoplasma			2013		
36622	23449645	Khanday I., Yadav S.R., Vijayraghavan U.	Rice LHS1/OsMADS1 Controls Floret Meristem Specification by Coordinated Regulation of Transcription Factors and Hormone Signaling Pathways.	Plant Physiol.	161(4)	1970-83	2013	ETT2,KAN4,KAN1,BLH1,MADS55,ETT1,HB4,PAP2,LHS1	OsARF2, ARF2, OsETT2, ARF3a, OsARF3a, DLN16, OsDLN16, ARF3,OsKAN4,OsKAN1, OsKAN2, KAN2,OsBLH1,OsMADS55, DLN163, OsDLN163,OsARF15, ARF15, OsETT1, ARF3b, OsARF3b, OsARF3-1, ARF3-1, OsARF3, ARF3, DLN154, OsDLN154,OSHB4, OsHox32, HOX32, OsHB4, Oshox32, PHB3, OsHDZ13, OsHDZIP13, HDZ13, HDZIP13,MADS34, OsMADS34, RMADS212/RMADS217/RMADS221, OsPAP2/MADS34, MADS34/PAP2, PAP2/OsMADS34, OsMADS34/PAP2, OsMADS19,OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO, OsLHS1, OsLG3b, LG3b, qLGY3, LGY3, DLN80, OsDLN80, OLR, OsOLR, GW3p6, OsGW3p6, OsMADS1GW3p6, MADS1GW3p6, qLGY3/OsLG3b/GW3p6
36625	23400831	Du H.Y., Shen Y.Z., Huang Z.J.	Function of the wheat TaSIP gene in enhancing drought and salt tolerance in transgenic Arabidopsis and rice.	Plant Mol. Biol.	81(4-5)	417-29	2013		
36626	23424246	Wang L., Song X., Gu L., Li X., Cao S., Chu C., Cui X., Chen X., Cao X.	NOT2 proteins promote polymerase II-dependent transcription and interact with multiple MicroRNA biogenesis factors in Arabidopsis.	Plant Cell	25(2)	715-27	2013	DCL1,_	Dcl1, OsDCL1, osDCL1, Os-DCL1, OsDCL1a, DCL1a,Os-NOT2, OsNOT2
36628	23454292	Nautiyal C.S., Srivastava S., Chauhan P.S., Seem K., Mishra A., Sopory S.K.	Plant growth-promoting bacteria Bacillus amyloliquefaciens NBRISN13 modulates gene expression profile of leaf and rhizosphere community in rice during salt stress.	Plant Physiol. Biochem.	66	1-9	2013		
36631	23379468	Kurniasih B., Greenway H., Colmer T.D.	Tolerance of submerged germinating rice to 50-200?mM NaCl in aerated solution.	Physiol Plant	149(2)	222-33	2013		
36633	23371559	Kudo K., Ohta M., Yang L., Wakasa Y., Takahashi S., Takaiwa F.	ER stress response induced by the production of human IL-7 in rice endosperm cells.	Plant Mol. Biol.	81(4-5)	461-75	2013	IRE1,BZIP50,PDIL2-3,BIP4,BIP5,BZIP39,BIP1,PDIL1-1,O3	OsIRE1, OsIre1,OsbZIP60, bZIP50, OsbZIP50, OsbZIP74, bZIP74, OsbZIP50-S,PDIL2;3, OsPDIL2;3, PDIL 2-3, OsPDIL2-3, OsTrx27, Trx27,OsBiP4, BiP4, OsMed37_5, Med37_5, BiP2,OsBiP5, OsBiP, BiP, BiP5, OsMed37_7, Med37_7,OsbZIP39, bZIP39, DLN138, OsDLN138,OsBiP1, BiP1, BiP, Bip3, OsBiP3, BIP1/OsBIP3, OsMed37_2, Med37_2 ,OsPDIL1;1, PDIL1;1, PDIL 1-1, PDI, OsPDIL1-1, OsTrx28, Trx28,OsbZIP60, bZIP60
36635	23397192	Fukumoto T., Kano A., Ohtani K., Inoue M., Yoshihara A., Izumori K., Tajima S., Shigematsu Y., Tanaka K., Ohkouchi T., Ishida Y., Nishizawa Y., Tada Y., Ichimura K., Gomi K., Yoo S.D., Sheen J., Akimitsu K.	Phosphorylation of D-allose by hexokinase involved in regulation of OsABF1 expression for growth inhibition in Oryza sativa L.	Planta	237(5)	1379-91	2013	NCED2,ABA8OX2,ABI5,WSI18,NCED1,ABA1,NCED3,ABA8OX1,ABA8OX3	OSNCED2, OsNCED2, OsNCED5, NCED5,OsABA8OX2, OsABA8ox2, CYP707A6, OsCYP707A6, OsAba-ox2, OsABA8ox2, OsABA8OH2, ABA8OH2, ABA8'-OH2, OsABA8'ox2, ABA8'ox2, OsABAX2, ABAX2, OsABA8'OH2, ABA8'OH2,OsABI5, OsbZIP10, OsABF1, OREB1, OsABI5-1, OsABI5-2, OsOREB1, OREB1 ,OsLEA14, OsLEA14a, OsLEA14b, wsi18, pwsi18, OsWsi18, OsLEA14/WSI18,OSNCED1, OsNCED-1, OsNCED3, OsNced3, NCED3, OsNCED9, NCED9,OsABA1, Zep1, OsAba1, Aba2, OsAba2, OsZep1, Zep, OsZep, Aba1, OsABA2, Osaba1, OsZEP-1, OsZEP, OSZEP1, ZEP1, ZEP,OSNCED3, OsNCED-3, OsNCED3, OsNCED3a, NCED3a, OsNCED4, NCED4, OsNECD2, OsNCED2b, NCED2b ,OsABA8OX1, CYP707A5, OsCYP707A5, ABA8ox1, OsABA8ox1, OsABA8'OH1, ABA8'OH1 ,OsABA8OX3, OsABA8ox3, CYP707A7, OsCYP707A7, OsAba-ox3, OsABA8ox3, OsABA8'ox3, ABA8'ox3, OsABAX3, ABAX3, OsABA8'OH3, ABA8'OH3
36636	23377188	Shao Y., He Y.	Visible/near infrared spectroscopy and chemometrics for the prediction of trace element (Fe and Zn) levels in rice leaf.	Sensors (Basel)	13(2)	1872-83	2013		
36638	23466746	Lisko K.A., Hubstenberger J.F., Phillips G.C., Belefant-Miller H., McClung A., Lorence A.	Ontogenetic changes in vitamin C in selected rice varieties.	Plant Physiol. Biochem.	66	41-6	2013		
36640	23420033	Ou-Yang F., Luo Q.J., Zhang Y., Richardson C.R., Jiang Y., Rock C.D.	Transposable element-associated microRNA hairpins produce 21-nt sRNAs integrated into typical microRNA pathways in rice.	Funct. Integr. Genomics	13(2)	207-16	2013		
36641	23388640	Wu W., Zheng X.M., Lu G., Zhong Z., Gao H., Chen L., Wu C., Wang H.J., Wang Q., Zhou K., Wang J.L., Wu F., Zhang X., Guo X., Cheng Z., Lei C., Lin Q., Jiang L., Wang H., Ge S., Wan J.	Association of functional nucleotide polymorphisms at DTH2 with the northward expansion of rice cultivation in Asia.	Proc. Natl. Acad. Sci. U.S.A.	110(8)	2775-80	2013	RFT1,DTH2,HD3A,RAP1A,RAP1B	FT-L 3, OsFTL3, FTL3, FT-L3, RFT, OsRFT1,OsBBX19, BBX19, OsM, OsDTH2, qDTH-2, OsCCT22, CCT22,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,OsMADS15, FDRMADS3, RMADS215, MADS15, DEP,MADS14, OsMADS14, FDRMADS6, RMADS211, AGL10
36642	23445750	Platten J.D., Egdane J.A., Ismail A.M.	Salinity tolerance, Na+ exclusion and allele mining of HKT1;5 in Oryza sativa and O. glaberrima: many sources, many genes, one mechanism?	BMC Plant Biol.	13	32	2013	SKC1	OsHKT8, HKT8, Os-HKT1;5, OsHKT1;5, HKT1;5, SKC1, qSKC-1(t), OsSKC1
36643	23391577	Bartley L.E., Peck M.L., Kim S.R., Ebert B., Manisseri C., Chiniquy D.M., Sykes R., Gao L., Rautengarten C., Vega-S?nchez ME., Benke P.I., Canlas P.E., Cao P., Brewer S., Lin F., Smith W.L., Zhang X., Keasling J.D., Jentoff R.E., Foster S.B., Zhou J., Ziebell A., An G., Scheller H.V., Ronald P.C.	Overexpression of a BAHD Acyltransferase, OsAt10, Alters Rice Cell Wall Hydroxycinnamic Acid Content and Saccharification.	Plant Physiol.	161(4)	1615-33	2013	AT11,AT12,AT2,AT3,AT7,AT8,AT9,AT13,AT14,AT15,AT16,AT17,AT18,AT19,AT20,AT10,AT1,AT5,AT6,PMT	OsAT11, OsAt11,OsAT12, OsAt12,OsAT2, OsAt2,OsAT3, OsAt3,OsAT7, OsAt7,OsAT8, OsAt8,OsAT9, OsAt9,OsAT13, OsAt13,OsAT14, OsAt14,OsAT15, OsAt15,OsAT16, OsAt16,OsAT17, OsAt17,OsAT18, OsAt18,OsAT19, OsAt19,OsAT20, OsAt20,OsAT10, OsAt10,OsAT1, OsAt1,OsAT5, OsAt5, OsFMT1, FMT1, OsFMT/AT5, OsFMT, FMT,OsAT6, OsAt6,OsAT4, OsAt4, AT4, OsPMT, OsAT4/PMT, OsAT4/PMT1, OsAT4/OsPMT1, OsPMT1
36644	23421475	Shimajiri Y., Oonishi T., Ozaki K., Kainou K., Akama K.	Genetic manipulation of the gamma-aminobutyric acid (GABA) shunt in rice: overexpression of truncated glutamate decarboxylase (GAD2) and knockdown of gamma-aminobutyric acid transaminase (GABA-T) lead to sustained and high levels of GABA accumulation in rice kernels.	Plant Biotechnol. J.	11(5)	594-604	2013		
36650	23432654	Yamatani H., Sato Y., Masuda Y., Kato Y., Morita R., Fukunaga K., Nagamura Y., Nishimura M., Sakamoto W., Tanaka A., Kusaba M.	NYC4, the rice ortholog of Arabidopsis THF1, is involved in the degradation of chlorophyll - protein complexes during leaf senescence.	Plant J.	74(4)	652-62	2013		
36654	23267004	Liu F., Xu W., Song Q., Tan L., Liu J., Zhu Z., Fu Y., Su Z., Sun C.	Microarray-Assisted Fine-Mapping of Quantitative Trait Loci for cold tolerance in Rice.	Mol Plant	6(3)	757-67	2013	LTT7	OsLTT7
36656	23385446	Nezhad R.M., Shahpiri A., Mirlohi A.	Heterologous expression and metal-binding characterization of a type 1 metallothionein isoform (OsMTI-1b) from rice (Oryza sativa).	Protein J.	32(2)	131-7	2013	MTI1B	OsMT1b, MT1b, OsMT-I-1b, OsMTI-1b, MT-I-1b, MTI-1b, MT1La, OsMT1La, OsMT1
36663	23390608	Ye H., Beighley D.H., Feng J., Gu X.Y.	Genetic and physiological characterization of two clusters of quantitative trait Loci associated with seed dormancy and plant height in rice.	G3 (Bethesda)	3(2)	323-31	2013		
36664	23230849	Zhang J.J., Xue H.W.	OsLEC1/OsHAP3E participates in the determination of meristem identity in both vegetative and reproductive developments of rice.	J Integr Plant Biol	55(3)	232-49	2013	LEC1,OSH1	OsHAP3E, HAP3E, OsLEC1/OsHAP3E, OsLEC1, LEC1, OsNF-YB7, NF-YB7, NFYB7, L1L ,OSKN1, Oskn1, OsKN1, OSH1/Oskn1, HB75
36665	23424248	Challis R.J., Hepworth J., Mouchel C., Waites R., Leyser O.	A Role for MORE AXILLARY GROWTH1 (MAX1) in Evolutionary Diversity in Strigolactone Signaling Upstream of MAX2.	Plant Physiol.	161(4)	1885-902	2013	D14,MAX1D,D27,MAX1B,SLB1,MAX1C,SLB2,D10,D17,CCD8A,D3	d14(d10), dwf13, d10, d14, D88, HTD2, OsHTD2, OsD14, qPPB3, D88/D14, HTD4,OsMAX1D, Os1900/CYP711A5, Os1900, CYP711A5, OsCYP711A5,d27(d t), dt, dwf23, d27, OsD27,OsMAX1b, MAX1b, Os5100/CYP711A6, Os5100, CYP711A6, Os/CYP711A6,OsSLB1, Os900/CYP711A2, Os900, CYP711A2, OsCYP711A2, OsCO, CO,OsMAX1c, MAX1c, Os1500/CYP711A4, Os1500, CYP711A4, OsCYP711A4,CYP711A1, OsCYP711A1, Os1400/CYP711A3, Os1400, CYP711A3, OsCYP711A3, OsMAX1-1400, MAX1-1400,d10(d15,d16), d16, d15, dwf9, d10, OsCCD8b, OsCCD8, CCD8, OsD10,d17(t), dwf14, d17, htd1, OsCCD7, CCD7, D17/HTD1, HTD1, OsHTD1, OsD17,OsCCD8a, OsCCD8c, CCD8a, CCD8c,d3, dwf3, D3/OsMAX2, Os_F0760, SOL1, OsORE9, ORE9, MAX2, OsRFPH2-10, RFPH2-10, OsD3,  OsFBL27, FBL27
36666	23437825	Wang K., Gao F., Ji Y., Liu Y., Dan Z., Yang P., Zhu Y., Li S.	ORFH79 impairs mitochondrial function via interaction with a subunit of electron transport chain complex III in Honglian cytoplasmic male sterile rice.	New Phytol.	198(2)	408-18	2013	CDC2-1,CDC2-2,_,_,_,KRP3,_,_	cdc2Os-1, CDC2Os-1, CDKA-1, CDKA;1, Orysa;CDKA;1, OsCDKA;1, cdc2Os1, Rcdc2-1, OsCDKA1, CDKA1, CDC20S-1, OsCDC20S-1 ,cdc2Os-2, CDC2Os-2, CDKA-2, CDKA;2, Orysa;CDKA;2, Rcdc2-2, OsCDKA;2, OsCDKA2, CDKA2, CDKA;1, OsCDKA;1, CDC20S-2, OsCDC20S-2,orfH79, ORFH79,OsRFPH2-19,  OsRING373, RING373,P61,OsiICK3, Orysa;KRP3, OrysaICK3, Orysa;ICK3,,OsFbox156, Os_F0603,  OsFBL62, FBL62
36667	23400830	Zhang F., Jiang Y.Z., Yu S.B., Ali J., Paterson A.H., Khush G.S., Xu J.L., Gao Y.M., Fu B.Y., Lafitte R., Li Z.K.	Three genetic systems controlling growth, development and productivity of rice (Oryza sativa L.): a reevaluation of the 'Green Revolution'.	Theor. Appl. Genet.	126(4)	1011-24	2013		
36670	23437005	Gao H., Zheng X.M., Fei G., Chen J., Jin M., Ren Y., Wu W., Zhou K., Sheng P., Zhou F., Jiang L., Wang J., Zhang X., Guo X., Wang J.L., Cheng Z., Wu C., Wang H., Wan J.M.	Ehd4 encodes a novel and Oryza-genus-specific regulator of photoperiodic flowering in rice.	PLoS Genet.	9(2)	e1003281	2013	RFT1,EF1,HD3A,EHD4	FT-L 3, OsFTL3, FTL3, FT-L3, RFT, OsRFT1,Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,OsC3H20, C3H20, Ehd4, DLN73, DLN73a, DLN73b, OsDLN73, OsDLN73a, OsDLN73b
36672	23434671	Sangha J.S., Chen Y.H., Kaur J., Khan W., Abduljaleel Z., Alanazi M.S., Mills A., Adalla C.B., Bennett J., Prithiviraj B., Jahn G.C., Leung H.	Proteome Analysis of Rice (Oryza sativa L.) Mutants Reveals Differentially Induced Proteins during Brown Planthopper (Nilaparvata lugens) Infestation.	Int J Mol Sci	14(2)	3921-45	2013		
36674	23456247	Gill S.S., Tajrishi M., Madan M., Tuteja N.	A DESD-box helicase functions in salinity stress tolerance by improving photosynthesis and antioxidant machinery in rice (Oryza sativa L. cv. PB1).	Plant Mol. Biol.	82(1-2)	1-22	2013		
36675	23421602	Zhou Q., Yu Q., Wang Z., Pan Y., Lv W., Zhu L., Chen R., He G.	Knockdown of GDCH gene reveals reactive oxygen species-induced leaf senescence in rice.	Plant Cell Environ.	36(8)	1476-89	2013	WRKY72,GDCH	OsWRKY72, WRKY-72,OsGDCH
36679	23396040	Cheng X., Zhu L., He G.	Towards understanding of molecular interactions between rice and the brown planthopper.	Mol Plant	6(3)	621-34	2013		
36680	23206229	Jiang Y., Chen X., Ding X., Wang Y., Chen Q., Song W.Y.	The XA21 binding protein XB25 is required for maintaining XA21-mediated disease resistance.	Plant J.	73(5)	814-23	2013	_,_,XA21,_	OsBIANK1, BIANK1, XB25,Xbos251, XBOS251 ,Xa21*, Xa21, OsXA21,Xbos252, XBOS252
36681	22992000	Qin X., Liu J.H., Zhao W.S., Chen X.J., Guo Z.J., Peng Y.L.	Gibberellin 20-oxidase gene OsGA20ox3 regulates plant stature and disease development in rice.	Mol. Plant Microbe Interact.	26(2)	227-39	2013		
36682	23327584	Yang L., Tian D., Todd C.D., Luo Y., Hu X.	Comparative proteome analyses reveal that nitric oxide is an important signal molecule in the response of rice to aluminum toxicity.	J. Proteome Res.	12(3)	1316-30	2013		
36683	23456295	Kang C.H., Moon B.C., Park H.C., Koo S.C., Chi Y.H., Cheong Y.H., Yoon B.D., Lee S.Y., Kim C.Y.	Rice small C2-domain proteins are phosphorylated by calcium-dependent protein kinase.	Mol. Cells	35(5)	381-7	2013	RPP16,RPP17,CDPK18	Rpp16(t), ERG3, OsERG3, OsC2DP36, C2DP36,Rpp17, FIERG1, OsERG1, OsERG1a, OsERG1b, OsC2DP8, C2DP8,OsCDPK18, OsCPK18, CDPK5, OsCDPK5, CPK18
36684	23395688	Hu J., Yi R., Zhang H., Ding Y.	Nucleo-cytoplasmic interactions affect RNA editing of cox2, atp6 and atp9 in alloplasmic male-sterile rice (Oryza sativa L.) lines.	Mitochondrion	13(2)	87-95	2013		
36689	23500712	Lin C.Y., Trinh N.N., Lin C.W., Huang H.J.	Transcriptome analysis of phytohormone, transporters and signaling pathways in response to vanadium stress in rice roots.	Plant Physiol. Biochem.	66	98-104	2013		
36690	23423653	Zuo S., Yin Y., Pan C., Chen Z., Zhang Y., Gu S., Zhu L., Pan X.	Fine mapping of qSB-11 (LE) , the QTL that confers partial resistance to rice sheath blight.	Theor. Appl. Genet.	126(5)	1257-72	2013		
36691	23382237	Li S., Zhao B., Yuan D., Duan M., Qian Q., Tang L., Wang B., Liu X., Zhang J., Wang J., Sun J., Liu Z., Feng Y.Q., Yuan L., Li C.	Rice zinc finger protein DST enhances grain production through controlling Gn1a/OsCKX2 expression.	Proc. Natl. Acad. Sci. U.S.A.	110(8)	3167-72	2013	GN1A,DST	Gn1a, OsCKX2, CKX2, ckx2, Gn1a/OsCKX2, Os CKX2, CKX2/Gn1a,OsDST, DLN102, OsDLN102, HST1, OsHST1
36693	23435087	Ishii T., Numaguchi K., Miura K., Yoshida K., Thanh P.T., Htun T.M., Yamasaki M., Komeda N., Matsumoto T., Terauchi R., Ishikawa R., Ashikari M.	OsLG1 regulates a closed panicle trait in domesticated rice.	Nat. Genet.	45(4)	462-5, 465e1-2	2013	QSH1,SPR3,LG1,SH4	qSH1, qsh1, qSH-1, RIL1, OsRIL1 ,Spr3(t), Spr3,SPL8, OsSPL8, OsLG1,sh4, SH4, SHAT2, SHA1, qSH4, QSH4, OsSh4, Sh4, Osh4, OsMSL23, MSL23
36695	23300256	Yun D., Liang W., Dreni L., Yin C., Zhou Z., Kater M.M., Zhang D.	OsMADS16 Genetically Interacts with OsMADS3 and OsMADS58 in Specifying Floral Patterning in Rice.	Mol Plant	6(3)	743-56	2013		
36696	23280541	Morzan U.N., Capece L., Marti M.A., Estrin D.A.	Quaternary structure effects on the hexacoordination equilibrium in rice hemoglobin rHb1: Insights from molecular dynamics simulations.	Proteins	81(5)	863-73	2013		
36698	23448934	Yang Y.L., Wu J.G., Zhou Y.F., Shi C.H.	[Morphological characteristics and gene mapping of a novel bent pedicel branch (bpb1) mutant in rice].	Yi Chuan	35(2)	208-14	2013		
36699	23420309	Zhang H., Zhang J., Quan R., Pan X., Wan L., Huang R.	EAR motif mutation of rice OsERF3 alters the regulation of ethylene biosynthesis and drought tolerance.	Planta	237(6)	1443-51	2013		
36701	23430256	Luang S., Cho J.I., Mahong B., Opassiri R., Akiyama T., Phasai K., Komvongsa J., Sasaki N., Hua Y.L., Matsuba Y., Ozeki Y., Jeon J.S., Cairns J.R.	Rice Os9BGlu31 Is a Transglucosidase with the Capacity to Equilibrate Phenylpropanoid, Flavonoid, and Phytohormone Glycoconjugates.	J. Biol. Chem.	288(14)	10111-23	2013	BGLU31	Os9bglu31, Os9BGlu31 
36703	23602097	Li Y., Liu S., Yu Z., Liu Y., Wu P.	Isolation and characterization of two novel root-specific promoters in rice (Oryza sativa L.).	Plant Sci.	207	37-44	2013		
36704	23470720	Xuan Y.H., Priatama R.A., Kumar V., Han C.D.	Regulatory role of indeterminate domain 10 (IDD10) in ammonium-dependent gene expression in rice roots.	Plant Signal Behav	8(5)		2013		
36705	23521226	Park S., Byeon Y., Back K.	Transcriptional suppression of tryptamine 5-hydroxylase, a terminal serotonin biosynthetic gene, induces melatonin biosynthesis in rice (Oryza sativa L.).	J. Pineal Res.	55(2)	131-7	2013		
36706	23518283	Jacquemin J., Bhatia D., Singh K., Wing R.A.	The International Oryza Map Alignment Project: development of a genus-wide comparative genomics platform to help solve the 9 billion-people question.	Curr. Opin. Plant Biol.	16(2)	147-56	2013		
36707	23641184	Takano-Kai N., Jiang H., Powell A., McCouch S., Takamure I., Furuya N., Doi K., Yoshimura A.	Multiple and independent origins of short seeded alleles of GS3 in rice.	Breed. Sci.	63(1)	77-85	2013		
36708	23523465	Shi Y., Wang Y., Flowers T.J., Gong H.	Silicon decreases chloride transport in rice (Oryza sativa L.) in saline conditions.	J. Plant Physiol.	170(9)	847-53	2013		
36709	23496930	Cantu D., Yang B., Ruan R., Li K., Menzo V., Fu D., Chern M., Ronald P.C., Dubcovsky J.	Comparative analysis of protein-protein interactions in the defense response of rice and wheat.	BMC Genomics	14	166	2013		
36710	23496140	Schmitz A.J., Folsom J.J., Jikamaru Y., Ronald P., Walia H.	SUB1A-mediated submergence tolerance response in rice involves differential regulation of the brassinosteroid pathway.	New Phytol.	198(4)	1060-70	2013		
36712	23347338	Riemann M., Haga K., Shimizu T., Okada K., Ando S., Mochizuki S., Nishizawa Y., Yamanouchi U., Nick P., Yano M., Minami E., Takano M., Yamane H., Iino M.	Identification of rice allene oxide cyclase mutants and the function of jasmonate for defence against Magnaporthe oryzae.	Plant J.	74(2)	226-38	2013	AOC	OsAOC, AOC1, OsAOC1, HB, CPM2, OsAOC4, AOC4
36714	23495675	Roy A., Sahoo D., Tripathy B.C.	Involvement of phytochrome A in suppression of photomorphogenesis in rice seedling grown in red light.	Plant Cell Environ.			2013		
36717	23373859	Sasidharan R., Voesenek L.A.	Lowland rice: high-end submergence tolerance.	New Phytol.	197(4)	1029-31	2013		
36718	23477923	Taoka K., Ohki I., Tsuji H., Kojima C., Shimamoto K.	Structure and function of florigen and the receptor complex.	Trends Plant Sci.	18(5)	287-94	2013	GF14C,HD3A,KAN1,BZIP77,GID2,_,GF14B,GF14F,RAP1A	GF14c, OsGF14c, 14-3-3c,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,OsKAN1, OsKAN2, KAN2,OsbZIP77, OsFD1, FD1,gid2, GF14e, OsGF14e, OsGID2, 14-3-3e,OsBIP116b,GF14b, OsGF14b, 14-3-3b,GF14f, SR14-3-3, OsGF14f, S94, ric1, 14-3-3f,OsMADS15, FDRMADS3, RMADS215, MADS15, DEP
36721	23508257	Philip A., Syamaladevi D.P., Chakravarthi M., Gopinath K., Subramonian N.	5' Regulatory region of Ubiquitin 2 gene from Porteresia coarctata makes efficient promoters for transgene expression in monocots and dicots.	Plant Cell Rep.	32(8)	1199-210	2013	_	
36722	23498959	Yamaguchi K., Yamada K., Ishikawa K., Yoshimura S., Hayashi N., Uchihashi K., Ishihama N., Kishi-Kaboshi M., Takahashi A., Tsuge S., Ochiai H., Tada Y., Shimamoto K., Yoshioka H., Kawasaki T.	A receptor-like cytoplasmic kinase targeted by a plant pathogen effector is directly phosphorylated by the chitin receptor and mediates rice immunity.	Cell Host Microbe	13(3)	347-57	2013	DSG1,SMG1,PR10A,RLCK55,PAL1,CERK1,RLCK185,MSRMK2	OsMAPK6, MAPK6, OsMPK6, OsSIPK, SIPK, OsMAPK1, MAPK1, MPK1, OsMPK1, MPK6, OsDSG1,OsMKK4, MKK4, OsMKK4/SMG1, OsMAPKK4, MAPKK4, OsMEK4, MEK4, OsSMG1, SMG1/OsMEK6, OsMEK6, MEK6, OsSTS, STS,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsRLCK55,OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6,OsCERK1, OsLysM-RLK9, Os-CERK1, Os-LysM-RLK9, OsLysMRLK9, OsCERK1/OsLYK9, OsLYK9, LYK9,OsRLCK185,OsMSRMK2, OsMAPK5, OsMAP1, OsMPK3, OsBIMK1, OsMAPK2, MPK5, BIMK1, MAPK2, MAPK5, MPK3, OsMPK5, OsMAPK3, OsMAPK5b, MAPK3
36723	23234404	Jiang C.J., Shimono M., Sugano S., Kojima M., Liu X., Inoue H., Sakakibara H., Takatsuji H.	Cytokinins act synergistically with salicylic acid to activate defense gene expression in rice.	Mol. Plant Microbe Interact.	26(3)	287-96	2013	NH1,PR10A,WRKY45,PR1B,GN1A,RR6	OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2, DLN5, OsDLN5,  OsBTBA1, BTBA1,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsWRKY45, OsWRKY45-1, OsWRKY45-2, WRKY45-1, WRKY45-2,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1, OsPR1a, PR1a,Gn1a, OsCKX2, CKX2, ckx2, Gn1a/OsCKX2, Os CKX2, CKX2/Gn1a,OsRR6, rr6, Rra6, OsRRA6
36724	23499843	Bae H., Kim W.T.	The N-terminal tetra-peptide (IPDE) short extension of the U-box motif in rice SPL11 E3 is essential for the interaction with E2 and ubiquitin-ligase activity.	Biochem. Biophys. Res. Commun.	433(2)	266-71	2013		
36726	23643394	Latif M.A., Rahman M.M., Ali M.E., Ashkani S., Rafii M.Y.	Inheritance studies of SSR and ISSR molecular markers and phylogenetic relationship of rice genotypes resistant to tungro virus.	C. R. Biol.	336(3)	125-33	2013		
36728	23466806	Puig J., Meynard D., Khong G.N., Pauluzzi G., Guiderdoni E., Gantet P.	Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.	Gene Expr. Patterns	13(5-6)	160-170	2013	MADS25,MADS61,MADS23,MADS27,MADS57	OsMADS25,OsMADS61, MADS-27b,OsMADS23, MADS-23,OsMADS27, MADS-27a, OsSTA66, OsMADS27a,OsMADS57, MADS-57
36730	23279638	Ribot C., C?sari S., Abidi I., Chalvon V., Bournaud C., Vallet J., Lebrun M.H., Morel J.B., Kroj T.	The Magnaporthe oryzae effector AVR1-CO39 is translocated into rice cells independently of a fungal-derived machinery.	Plant J.	74(1)	1-12	2013		
36731	23420902	Ishiwata A., Ozawa M., Nagasaki H., Kato M., Noda Y., Yamaguchi T., Nosaka M., Shimizu-Sato S., Nagasaki A., Maekawa M., Hirano H.Y., Sato Y.	Two WUSCHEL-related homeobox Genes, narrow leaf2 and narrow leaf3, Control leaf width in Rice.	Plant Cell Physiol.	54(5)	779-92	2013	NAL3,PNH1,NAL2	nal3(nal2), nal2, nal3, cul3, OsWOX3A, WOX3A, WOX3, OsWOX3, OsNS, OsNS1/OsNS2, OsPRS,OsPNH1,nal2, nal3, cul2, OsWOX3A, WOX3A, Os NS, NS, OsNS, OsWOX3, OsNS1/OsNS2, OsPRS
36732	23521023	Mazid M.S., Rafii M.Y., Hanafi M.M., Rahim H.A., Latif M.A.	Genetic variation, heritability, divergence and biomass accumulation of rice genotypes resistant to bacterial blight revealed by quantitative traits and ISSR markers.	Physiol Plant	149(3)	432-47	2013		
36733	23519729	Yoshikawa T., Eiguchi M., Hibara K., Ito J., Nagato Y.	Rice SLENDER LEAF 1 gene encodes cellulose synthase-like D4 and is specifically expressed in M-phase cells to regulate cell proliferation.	J. Exp. Bot.	64(7)	2049-61	2013		
36741	23463776	Liu Y.J., Xiu Z.H., Meeley R., Tan B.C.	Empty pericarp5 encodes a pentatricopeptide repeat protein that is required for mitochondrial RNA editing and seed development in maize.	Plant Cell	25(3)	868-83	2013	_	EMP5, Os EMP5, OsEMP5
36742	23462973	Chujo T., Miyamoto K., Shimogawa T., Shimizu T., Otake Y., Yokotani N., Nishizawa Y., Shibuya N., Nojiri H., Yamane H., Minami E., Okada K.	OsWRKY28, a PAMP-responsive transrepressor, negatively regulates innate immune responses in rice against rice blast fungus.	Plant Mol. Biol.	82(1-2)	23-37	2013	WRKY62,WRKY28,WRKY76,WRKY71	OsWRKY62, OsWRKY62.1, OsWRKY62.2, XB10, OsWRKY62-1, OsWRKY62-2,OsWRKY28, DLN170, OsDLN170,OsWRKY76, OsWRKY76.1, OsWRKY76.2, OsWRKY76.3,OsWRKY71, WRKY-71
36743	23456248	Huang J., Kim C.M., Xuan Y.H., Park S.J., Piao H.L., Je B.I., Liu J., Kim T.H., Kim B.K., Han C.D.	OsSNDP1, a Sec14-nodulin domain-containing protein, plays a critical role in root hair elongation in rice.	Plant Mol. Biol.	82(1-2)	39-50	2013	SNDP8,SNDP10,SNDP2,SNDP7,SNDP4,SNDP3,SNDP1,SNDP6,SNDP9,SNDP5	OsSNDP8, OsSec14-9, Sec14-9,OsSNDP10, OsSec14-23, Sec14-23,OsSNDP2, OsSec14-8, Sec14-8,OsSNDP7, OsSec14-20, Sec14-20,OsSNDP4, OsSec14-5, Sec14-5,OsSNDP3, OsSec14-6, Sec14-6,OsSNDP1, OsSec14-24, Sec14-24,OsSNDP6, OsSec14-16, Sec14-16,OsSNDP9, OsSec14-21, Sec14-21,OsSNDP5, OsSec14-2, Sec14-2
36744	23529204	Huang X., Wang J., Du Z., Zhang C., Li L., Xu Z.	Enhanced resistance to stripe rust disease in transgenic wheat expressing the rice chitinase gene RC24.	Transgenic Res.	22(5)	939-47	2013		
36745	23526892	Hu X., Qian Q., Xu T., Zhang Y., Dong G., Gao T., Xie Q., Xue Y.	The U-box E3 ubiquitin ligase TUD1 functions with a heterotrimeric G alpha subunit to regulate Brassinosteroid-mediated growth in rice.	PLoS Genet.	9(3)	e1003391	2013	D61,ELF1,D1	d61*, dwf42, d61, OsBRI1, OSBRI1, BRI1, Os BRI1, Osbri1, OsBRKq1, BRKq1,OsPUB31, PUB31, OsPUB75, PUB75, TUD1, OsTUD1, DSG1,  OsPUB75, PUB75,d1, GPA1, GA1, OsGA1, RGA1, dwf1, XA7, RGA, D1/RGA1, D89, TGW5, OsTGW5, SRG5, OsSRG5
36747	23505380	Nallamilli B.R., Zhang J., Mujahid H., Malone B.M., Bridges S.M., Peng Z.	Polycomb group gene OsFIE2 regulates rice (Oryza sativa) seed development and grain filling via a mechanism distinct from Arabidopsis.	PLoS Genet.	9(3)	e1003322	2013	FIE1,EMF2B,FIE2,IEZ1,CLF	OsFIE1, OsWD40-154, OsEnS-116, OsFIE1/OsWD40-154, WD40-154 ,OsEMF2b, EMF2b, GW9, OsGW9, GW9/OsEMF2b ,OsFIE2, FIE, OsWD40-153,  OsDWD46, DWD46,OsiEZ1, OsSET1, SET1, iEZ1, OsEZ1/OsiEZ1, OsEZ1, EZ1, ez1, OsSET15, SDG718, DLN84, OsDLN84,OsSET24, SDG711, EZ1, OsCLF, OsSDG711
36748	23480486	Zhou J., Wang F., Deng P., Jing W., Zhang W.	Characterization and Mapping of a Salt-Sensitive Mutant in Rice (Oryza sativa L.).	J Integr Plant Biol	55(6)	504-13	2013		
36756	23331932	Hayashi S., Takahashi H., Wakasa Y., Kawakatsu T., Takaiwa F.	Identification of a cis-element that mediates multiple pathways of the endoplasmic reticulum stress response in rice.	Plant J.	74(2)	248-57	2013	BZIP50,BIP2,BIP3,O3,IRE1,BIP5,SAR1D,BZIP39,BIP4	OsbZIP60, bZIP50, OsbZIP50, OsbZIP74, bZIP74, OsbZIP50-S,OsBiP2, Bip2,OsBiP3, BiP3,OsbZIP60, bZIP60,OsIRE1, OsIre1,OsBiP5, OsBiP, BiP, BiP5, OsMed37_7, Med37_7,OsSAR1, SAR1, OsARL1c, ARL1c, OsSar1d, Sar1d,OsbZIP39, bZIP39, DLN138, OsDLN138,OsBiP4, BiP4, OsMed37_5, Med37_5, BiP2
36757	23519921	Kim Y.S., Kim I.S., Bae M.J., Choe Y.H., Kim Y.H., Park H.M., Kang H.G., Yoon H.S.	Homologous expression of cytosolic Dehydroascorbate reductase increases grain yield and biomass under paddy field conditions in transgenic rice (Oryza sativa L. japonica).	Planta	237(6)	1613-25	2013		
36761	23289852	Sakuraba Y., Rahman M.L., Cho S.H., Kim Y.S., Koh H.J., Yoo S.C., Paek N.C.	The rice faded green leaf locus encodes protochlorophyllide oxidoreductase B and is essential for chlorophyll synthesis under high light conditions.	Plant J.	74(1)	122-33	2013	PORA,FGL	OsPorA, OsPORA,fgl(fl), fl, fgl, OsFGL, OsPorB, PoPA, PORA, porA, OsPORA, PORB, OsPORB
36762	23512849	Wang Y., Kim S.G., Wu J., Huh H.H., Lee S.J., Rakwal R., Kumar Agrawal G., Park Z.Y., Young Kang K., Kim S.T.	Secretome analysis of the rice bacterium Xanthomonas oryzae (Xoo) using in vitro and in planta systems.	Proteomics	13(12-13)	1901-12	2013		
36765	23289750	Kang B., Zhang Z., Wang L., Zheng L., Mao W., Li M., Wu Y., Wu P., Mo X.	OsCYP2, a chaperone involved in degradation of auxin-responsive proteins, plays crucial roles in rice lateral root initiation.	Plant J.	74(1)	86-97	2013	SGT1,LRT2,IAA9,IAA11,IAA20	OsSgt1, OsSGT1, Os SGT1,CYC2, cyc2*, cyc2, OsCYP2, Cyp2, OsCYP19-2, CYP19-2, OsCYP-2, OsCyp2-P, OsCyp2, OsCYP19-1, LRT2/OsCYP2, lrt2*, lrt2, Ppcti ,OsIAA9, OsIAA2,OsIAA11,OsIAA20
36771	23519457	Ji C., Li H., Chen L., Xie M., Wang F., Chen Y., Liu Y.G.	A Novel Rice bHLH Transcription Factor, DTD, Acts Coordinately with TDR in Controlling Tapetum Function and Pollen Development.	Mol Plant	6(5)	1715-8	2013	EAT1,RTS,OSC4,TDR,C6	OsEAT1, OsbHLH141, EAT1/DTD1, bHLH141, DTD1, DTD, DLN120, OsDLN120,RTS, RTS2,Osc4, OsC4, Osg4B, OsLTPc1, OsLtpIII.1, C4,tdr, OsbHLH005, bHLH005, OsbHLH5, bhlh5, TDR1, OsTDR, OsTDR1, OsMYC5, MYC5,Osc6, Osg6B, OsG6B, OsLTPG25, OsLTPg25, OsLtpVII.1, Os C6
36778	23526395	Yan D., Zhou Y., Ye S., Zeng L., Zhang X., He Z.	Beak-shaped grain 1/TRIANGULAR HULL 1, a DUF640 gene, is associated with grain shape, size and weight in rice.	Sci China Life Sci	56(3)	275-83	2013	MADS58,MADS13,LHS1,SPW1,WD40-109,MADS55,GW2,MFO1,BLS1	OsMADS58,OsMADS13, MAF1, RMADS206,OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO, OsLHS1, OsLG3b, LG3b, qLGY3, LGY3, DLN80, OsDLN80, OLR, OsOLR, GW3p6, OsGW3p6, OsMADS1GW3p6, MADS1GW3p6, qLGY3/OsLG3b/GW3p6,SPW1, spw1, MADS16, OsMADS16,OsWD40-109, OsCDC20, CDC20, CDC20.1, OsCDC20.1,  OsCDC20-2, CDC20-2, OsCDC20B, CDC20B,OsMADS55, DLN163, OsDLN163,OsGW2, OsRING429, RING429, GNL44, OsGNL44,OsMADS6, MADS6, OsMFO1,OsBLS1, OsG1L6, G1L6, TH1, OsTH1, TH1/BSG1/BLS1/AFD1, BSG1, OsBSG1, AFD1, OsAFD1, BH1, OsBH1
36780	23602104	Li W., Shao M., Yang J., Zhong W., Okada K., Yamane H., Qian G., Liu F.	Oscyp71Z2 involves diterpenoid phytoalexin biosynthesis that contributes to bacterial blight resistance in rice.	Plant Sci.	207	98-107	2013	CYP71Z1,CYP71Z8,CYP71Z6,CYP71Z3,CYP71Z7,CYP71Z5,CYP71Z4,CYP71Z2	Oscyp71Z1, OsCYP71Z7, CYP71Z7,Oscyp71Z8, OsCYP71Z3, CYP71Z3,Oscyp71Z6, OsCYP71Z5, CYP71Z5,Oscyp71Z3,Oscyp71Z7, OsCYP71Z6, CYP71Z6,Oscyp71Z5, OsCYP71Z4, CYP71Z4,Oscyp71Z4, OsCYP71Z2, CYP71Z2,Oscyp71Z2
36781	23346890	Chen X., Shi J., Hao X., Liu H., Shi J., Wu Y., Wu Z., Chen M., Wu P., Mao C.	OsORC3 is required for lateral root development in rice.	Plant J.	74(2)	339-50	2013		
36782	23485991	Park H.J., Lee S.S., You Y.N., Yoon D.H., Kim B.G., Ahn J.C., Cho H.S.	A Rice Immunophilin Gene, OsFKBP16-3, Confers Tolerance to Environmental Stress in Arabidopsis and Rice.	Int J Mol Sci	14(3)	5899-919	2013		
36783	23605194	Joo J., Choi H.J., Lee Y.H., Kim Y.K., Song S.I.	A transcriptional repressor of the ERF family confers drought tolerance to rice and regulates genes preferentially located on chromosome 11.	Planta	238(1)	155-70	2013		
36784	23602899	Hong M.J., Lee Y.M., Son Y.S., Im C.H., Yi Y.B., Rim Y.G., Bahk J.D., Heo J.B.	Rice Rab11 is required for JA-mediated defense signaling.	Biochem. Biophys. Res. Commun.	434(4)	797-802	2013	_,OG1,OPR8	OsRab11D1, OsRab11, Rab11, ric2,OsOPR7, OPR7, OsOPR13, OsOPR3, OsOPR5, OsOPR9, OsOPR08-1,  OPR13, OPR3, OPR5, OPR9, OPR08-1, OsOPR8, OPR8,OsOPR8, OsOPR7, OsOPR02-1
36785	23629674	Wang G.F., Li W.Q., Li W.Y., Wu G.L., Zhou C.Y., Chen K.M.	Characterization of Rice NADPH Oxidase Genes and Their Expression under Various Environmental Conditions.	Int J Mol Sci	14(5)	9440-58	2013	RBOHF,RBOHI,RBOHG,RBOHD,FRO2,RBOHA,RBOHH,RBOHC,RBOHB,_,RBOHE	RbohF, rbohF, OsrbohF, Os rbohF, OsNox6, Nox6, OsrbohE, rbohE, OsRboh6, Rboh6,OsrbohI, Os rbohI, rbohI, OsRbohI, OsRbohF, OsNOX8, NOX8, OsRboh8, Rboh8,rbohG, OsrbohG, Os rbohG, OsRbohG, OsNox7, Nox7, OsrbohB, OsRBOHB, RBOHB, OsRboh7, Rboh7,rbohD, OsrbohD, Os rbohD, OsRbohD, OsNox4, OsRboh4, Rboh4,OsFRO2, OsFRO1,rbohA, OsrbohA, Os rbohA, OsRbohA, OsNox2, Nox2, OsRboh2, Rboh2,rbohH, OsrbohH, Os rbohH, OsNox9, Nox9, OsRboh9, Rboh9, Os-RbohH, RbohH ,rbohC, OsrbohC, Os rbohC, OsRbohC, OsNox5, Nox5, OsrbohD, OsRboh5, RBOHA, OsRboh5, Rboh5,rbohB, OsrbohB, Os rbohB, OsRbohB, OsNox1, Nox1, Os-RbohB, RbohB, OsRboh1, Rboh1,OsFRO7, FRO7, OsFRO1 ,FRO1,rbohE, OsrbohE, Os rbohE, OsRbohE, OsNox3, Nox3, OsRboh3, Rboh3
36786	23576519	Robb S.M., Lu L., Valencia E., Burnette J.M., Okumoto Y., Wessler S.R., Stajich J.E.	The Use of RelocaTE and Unassembled Short Reads to Produce High-Resolution Snapshots of Transposable Element Generated Diversity in Rice.	G3 (Bethesda)	3(6)	949-57	2013		
36791	23376772	Song X.Q., Liu L.F., Jiang Y.J., Zhang B.C., Gao Y.P., Liu X.L., Lin Q.S., Ling H.Q., Zhou Y.H.	Disruption of Secondary Wall Cellulose Biosynthesis Alters Cadmium Translocation and Tolerance in Rice Plants.	Mol Plant	6(3)	768-80	2013		
36793	23601492	Yuki Y., Mejima M., Kurokawa S., Hiroiwa T., Takahashi Y., Tokuhara D., Nochi T., Katakai Y., Kuroda M., Takeyama N., Kashima K., Abe M., Chen Y., Nakanishi U., Masumura T., Takeuchi Y., Kozuka-Hata H., Shibata H., Oyama M., Tanaka K., Kiyono H.	Induction of toxin-specific neutralizing immunity by molecularly uniform rice-based oral cholera toxin B subunit vaccine without plant-associated sugar modification.	Plant Biotechnol. J.	11(7)	799-808	2013		
36794	23355544	Du Z., Li H., Wei Q., Zhao X., Wang C., Zhu Q., Yi X., Xu W., Liu X.S., Jin W., Su Z.	Genome-Wide Analysis of Histone Modifications: H3K4me2, H3K4me3, H3K9ac, and H3K27ac in Oryza sativa L. Japonica.	Mol Plant	6(5)	1463-72	2013		
36796	23603961	Ueno Y., Yoshida R., Kishi-Kaboshi M., Matsushita A., Jiang C.J., Goto S., Takahashi A., Hirochika H., Takatsuji H.	MAP kinases phosphorylate rice WRKY45.	Plant Signal Behav	8(6)		2013		
36798	23570336	Niu B.X., He F.R., He M., Ren D., Chen L.T., Liu Y.G.	The ATP-Binding Cassette Transporter OsABCG15 is Required for Anther Development and pollen Fertility in Rice.	J Integr Plant Biol	55(8)	710-20	2013		
36799	23563093	Liu L., Mei Q., Yu Z., Sun T., Zhang Z., Chen M.	An Integrative Bioinformatics Framework for Genome-scale Multiple Level Network Reconstruction of Rice.	J Integr Bioinform	10(2)	223	2013		
36801	23539245	Wang S., Takahashi H., Kajiura H., Kawakatsu T., Fujiyama K., Takaiwa F.	Transgenic Rice Seeds Accumulating Recombinant Hypoallergenic Birch pollen Allergen Bet v 1 Generate Giant Protein Bodies.	Plant Cell Physiol.	54(6)	917-33	2013		
36804	23628812	Demont M., Stein A.J.	Global value of GM rice: a review of expected agronomic and consumer benefits.	N Biotechnol	30(5)	426-36	2013		
36805	23551229	Cho S.H., Yoo S.C., Zhang H., Pandeya D., Koh H.J., Hwang J.Y., Kim G.T., Paek N.C.	The rice narrow leaf2 and narrow leaf3 loci encode WUSCHEL-related homeobox 3A (OsWOX3A) and function in leaf, spikelet, tiller and lateral root development.	New Phytol.	198(4)	1071-84	2013	NAL2,NAL3	nal2, nal3, cul2, OsWOX3A, WOX3A, Os NS, NS, OsNS, OsWOX3, OsNS1/OsNS2, OsPRS,nal3(nal2), nal2, nal3, cul3, OsWOX3A, WOX3A, WOX3, OsWOX3, OsNS, OsNS1/OsNS2, OsPRS
36806	23597918	Hashizume K., Ito T., Ishizuka T., Takeda N.	Formation of ethyl ferulate by rice koji enzyme in sake and mirin mash conditions.	J. Biosci. Bioeng.	116(2)	209-13	2013		
36807	23620302	Joo J., Lee Y.H., Kim Y.K., Nahm B.H., Song S.I.	Abiotic stress responsive rice ASR1 and ASR3 exhibit different tissue-dependent sugar and hormone-sensitivities.	Mol. Cells	35(5)	421-35	2013	RBLS2,ASR3,ASR2,ASR4,ASR4,ASR5	ASR1, OsAsr1, OsASR3, ASR3, Asr3, OsRBLS2,Asr3, OsASR5, OsASR1, Asr1,OsAsr2, OsASR4, ASR4, OsASR6, ASR6,Asr4, OsASR6, OsASR2, Asr2, OsASR1, ASR1,OsASR2, OsASR4, Asr4, ASR2, OsASR6, ASR6,OsASR5, Asr5, Asr1, OsASR1, OsASR2, ASR2
36808	23581288	Guo X., Hou X., Fang J., Wei P., Xu B., Chen M., Feng Y., Chu C.	The rice GERMINATION DEFECTIVE1, encoding a B3 domain transcriptional repressor, regulates seed germination and seedling development by integrating GA and carbohydrate metabolism.	Plant J.	75(3)	403-16	2013	LFL1,GA2OX3,_,GD1,GNP1,D18,SD1	OsLFL1, OsSTA29, STA29,OsGA2ox3, ga2ox 3, OsGA2ox-3, GA2ox3, GA2ox-3, GA2ox4,OsVAL2, VAL2, DLN195, OsDLN195,OsGD1, OsVAL1, VAL1, DLN186, OsDLN186,GA20OX1, OsGA20ox1, 20ox1, GA20ox-1, ga20ox1, Os20ox, C20OX2, OsGA20ox2, OsGA20ox-1, GA20ox1, OsGNP1,d18-h  (d18-I, d18h), dwf15, d25, d18, d18-k, d18-AD, d18-dy, OsGA3ox2, ga3ox2, OsGA3OX2, GA3OX2, OsGA3ox-2, GA3ox-2, GA3ox1,sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2, OsPHQ1, OsPHq1, PHq1
36809	23638826	Ouyang Y., Zhang Q.	Understanding reproductive isolation based on the rice model.	Annu Rev Plant Biol	64	111-35	2013		
36810	23583977	Ishimaru K., Hirotsu N., Madoka Y., Murakami N., Hara N., Onodera H., Kashiwagi T., Ujiie K., Shimizu B.I., Onishi A., Miyagawa H., Katoh E.	Loss of function of the IAA-glucose hydrolase gene TGW6 enhances rice grain weight and increases yield.	Nat. Genet.	45(6)	707-11	2013	TGW6	tgw6, OsSTRL7, STRL7, OsSSL4, SSL4
36812	23620301	Kim S.R., Yang J.I., An G.	OsCpn60alpha1, encoding the plastid chaperonin 60alpha subunit, is essential for folding of rbcL.	Mol. Cells	35(5)	402-9	2013	CPN60BETA1,_,CPN60ALPHA1,TCD9,_,_	OsCPn60beta1, OsCPn60b1, CPn60b1,OsCPn60beta2, OsCPn60b2,OsCPn60alpha1, OsCPn60a1, CPn60a1,OsCPn60alpha3, OsCPn60a3,OsCPn60alpha2, OsCPn60a2,OsCPn60beta3, OsCPn60b3
36814	23564402	Zhang L., Jiang D., Pang J., Chen R., Wang X., Yang D.	The endoplasmic reticulum stress induced by highly expressed OsrAAT reduces seed size via pre-mature programmed cell death.	Plant Mol. Biol.	83(1-2)	153-61	2013	BZIP50,O3,BIP1	OsbZIP60, bZIP50, OsbZIP50, OsbZIP74, bZIP74, OsbZIP50-S,OsbZIP60, bZIP60,OsBiP1, BiP1, BiP, Bip3, OsBiP3, BIP1/OsBIP3, OsMed37_2, Med37_2 
36815	23629832	Ren D., Li Y., Zhao F., Sang X., Shi J., Wang N., Guo S., Ling Y., Zhang C., Yang Z., He G.	MULTI-FLORET SPIKELET1, which encodes an AP2/ERF protein, determines spikelet meristem fate and sterile lemma identity in rice.	Plant Physiol.	162(2)	872-84	2013	SNB,G1,IDS1,MFS1	AP2/EREBP#073, AP2/EREBP73, AP2-3, OsAP2-3, SSH1, OsSSH1, OsSNB, DLN181, DLN181a, DLN181b, OsDLN181, OsDLN181a, OsDLN181b, SUI4, OsSUI4, SUI4/SNB,g1 (lng), lng, g1, ELE, Os ELE, OsG1, G1/ELE, LSL2, OsLSL2,OsIDS1, AP2/EREBP#033, AP2/EREBP33, AP2-33/IDS1, AP2-33, AP2-2, DLN104, OsDLN104,ERF130, OsERF#130, OsERF130, AP2/EREBP#165, AP2/EREBP165, DLN151, OsDLN151
36816	23596187	Leaungthitikanchana S., Fujibe T., Tanaka M., Wang S., Sotta N., Takano J., Fujiwara T.	Differential expression of three BOR1 genes corresponding to different genomes in response to boron conditions in hexaploid Wheat (Triticum aestivum L.).	Plant Cell Physiol.	54(7)	1056-63	2013	BOR3,BOR4,BOR1,BOR2	OsBOR3,OsBOR4,OsBOR1,OsBOR2
36817	23580440	Neilson K.A., Scafaro A.P., Chick J.M., George I.S., Van Sluyter SC., Gygi S.P., Atwell B.J., Haynes P.A.	The influence of signals from chilled roots on the proteome of shoot tissues in rice seedlings.	Proteomics	13(12-13)	1922-33	2013		
36824	23571660	Singh R., Jwa N.S.	The rice MAPKK-MAPK interactome: the biological significance of MAPK components in hormone signal transduction.	Plant Cell Rep.	32(6)	923-31	2013		
36825	23621526	Fukumoto K., Alamgir K.M., Yamashita Y., Mori I.C., Matsuura H., Galis I.	Response of rice to insect elicitors and the role of OsJAR1 in wound and herbivory-induced JA-Ile accumulation.	J Integr Plant Biol	55(8)	775-84	2013	JAR1	OsJAR1, OsGH3.5, GH3.5, OsGH3-5, GH3-5
36826	23628996	Ban Y., Kobayashi Y., Hara T., Hamada T., Hashimoto T., Takeda S., Hattori T.	alpha-tubulin Is Rapidly Phosphorylated in Response to Hyperosmotic Stress in Rice and Arabidopsis.	Plant Cell Physiol.	54(6)	848-58	2013		
36827	23563801	Song M.Y., Kim C.Y., Han M., Ryu H.S., Lee S.K., Sun L., He Z., Seo Y.S., Canal P., Ronald P.C., Jeon J.S.	Differential requirement of Oryza sativa RAR1 in immune receptor-mediated resistance of rice to Magnaporthe oryzae.	Mol. Cells	35(4)	327-34	2013		
36828	23580596	Fukuda M., Wen L., Satoh-Cruz M., Kawagoe Y., Nagamura Y., Okita T.W., Washida H., Sugino A., Ishino Y., Ishino S., Ogawa M., Sunada M., Ueda T., Kumamaru T.	A guanine nucleotide exchange factor for Rab5 proteins is essential for intracellular transport of the proglutelin from the Golgi apparatus to the protein storage vacuole in rice endosperm.	Plant Physiol.	162(2)	663-74	2013	GLUP4,GLUP6	glup4(esp8), esp8, glup4, OsRab5B2, Rab5a, OsRab5a, GPA1/Rab5a, GPA, GLUP4/Rab5, GLUP4/Rab5a, GPA1, OsGPA1,glup6(t), Glup6(t), Glup6, OsVPS9A, VPS9a, GPA2/VPS9a, GPA2, GLUP6/GEF
36830	23591078	Azuma T., Inoue Y., Hamada Y., Okishio T., Sasayama D., Itoh K.	Anoxia promotes gravitropic curvature in rice pulvini but inhibits it in wheat and oat pulvini.	J. Plant Physiol.	170(13)	1158-64	2013		
36831	23606413	Chen T., Xu Y., Wang J., Wang Z., Yang J., Zhang J.	Polyamines and ethylene interact in rice grains in response to soil drying during grain filling.	J. Exp. Bot.	64(8)	2523-38	2013		
36832	23509111	Funayama K., Kojima S., Tabuchi-Kobayashi M., Sawa Y., Nakayama Y., Hayakawa T., Yamaya T.	Cytosolic Glutamine Synthetase1;2 is Responsible for the Primary Assimilation of Ammonium in Rice Roots.	Plant Cell Physiol.	54(6)	934-43	2013	GLN1;2	OsGLN1;2, GSr, RGS8, OsGS1;2, GS1;2, GS1, OsGS1-2, GS1-2, OsGS1.2, GS1.2
36836	23601108	Akamatsu A., Wong H.L., Fujiwara M., Okuda J., Nishide K., Uno K., Imai K., Umemura K., Kawasaki T., Kawano Y., Shimamoto K.	An OsCEBiP/OsCERK1-OsRacGEF1-OsRac1 Module Is an Essential Early Component of Chitin-Induced Rice Immunity.	Cell Host Microbe	13(4)	465-76	2013	CERK1,RAC1,CEBIP,_	OsCERK1, OsLysM-RLK9, Os-CERK1, Os-LysM-RLK9, OsLysMRLK9, OsCERK1/OsLYK9, OsLYK9, LYK9,OsRAC1, OsRac1, Os Rac1, Rac1, Os-Rac1,CEBiP, Os-LYP1, LYP1, OsCEBiP,OsRacGEF1, RacGEF1, OsGEF1
36837	23586618	Kwon Y.I., Abe K., Endo M., Osakabe K., Ohtsuki N., Nishizawa-Yokoi A., Tagiri A., Saika H., Toki S.	DNA replication arrest leads to enhanced homologous recombination and cell death in meristems of rice OsRecQl4 mutants.	BMC Plant Biol.	13(1)	62	2013	_	OsRecQl4, RecQl4, OsMed34_1, Med34_1 
36838	23551455	Ogo Y., Ozawa K., Ishimaru T., Murayama T., Takaiwa F.	Transgenic rice seed synthesizing diverse flavonoids at high levels: a new platform for flavonoid production with associated health benefits.	Plant Biotechnol. J.	11(6)	734-46	2013	CHS,4CL3,ROMT9,_,C4H2,CHI3	CHS*, Oschs, chs, chas, OsCHS, OsCHS1, CHS1, OsPKS26, PKS26, OsCHS24, CHS24, OsCHS27, CHS27,Os4CL3, Os4CL2, Os4CL, 4CL2, 4CL,COMT, OsCOMT, ROMT-9, OsCOMT1, OsCAldOMT1, CAldOMT1, OsOMT, OsCOMT15, COMT15,OsPAL07, OsPAL, PAL07, OsPAL6, PAL6, PAL1, OsPAL7, PAL7,OsC4H, OsC4HL, C4H, OsC4H2,gh1, GH1, OsGH1, OsCHI, Cfi, CHI, OsCHI3
36843	23589438	Li J., Shang K., Liu J., Jiang T., Hua H.	Multi-generational effects of rice harboring Bph15 on brown planthopper, Nilaparvata lugens.	Pest Manag. Sci.			2013		
36845	23629836	Ueda K., Yoshimura F., Miyao A., Hirochika H., Nonomura K.I., Wabiko H.	COLLAPSED ABNORMAL pollen1 gene encoding the arabinokinase-like protein is involved in pollen development in rice.	Plant Physiol.	162(2)	858-71	2013	CAP1,-	,OsARA1
36846	23624440	Wu H.B., Wang B., Chen Y., Liu Y.G., Chen L.	Characterization and fine mapping of the rice premature senescence mutant ospse1.	Theor. Appl. Genet.	126(7)	1897-907	2013	NYC1,SGR,PSE1	nyc1, OsNYC1,sgr(t), sgr, OsSGR, OsSgr, SGR1, OsSGR1,OsPSE1, OsPLL1, PLL1
36848	23548743	Cesari S., Thilliez G., Ribot C., Chalvon V., Michel C., Jauneau A., Rivas S., Alaux L., Kanzaki H., Okuyama Y., Morel J.B., Fournier E., Tharreau D., Terauchi R., Kroj T.	The Rice Resistance Protein Pair RGA4/RGA5 Recognizes the Magnaporthe oryzae Effectors AVR-Pia and AVR1-CO39 by Direct Binding.	Plant Cell	25(4)	1463-81	2013	RGA4,PICO39,RGA5	Os11gRGA4, OsRGA4, Pias-1,PiCO39(t), Pi-CO39, Pi-CO39(t), pi-CO39(t),Os11gRGA5, OsRGA5, RGA5-A, RGA5-B, Pi5, Pias-2
36849	23571674	Lim S.D., Hwang J.G., Jung C.G., Hwang S.G., Moon J.C., Jang C.S.	Comprehensive Analysis of the Rice RING E3 Ligase Family Reveals Their Functional Diversity in Response to Abiotic stress.	DNA Res.	20(3)	299-314	2013	_,_,_,_,_,_,_,C3H15,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,RFPH2-8,_,RFPHC-2,RFPV6,RFPHC-1,RFPH2-9,RFPV1,SIP13 ,RFPHC14,RFPHC9,NLA1,HRZ2,RFI2,_,_,RFPH2-15,TTL1,_,_	OsRFPH2-1,  OsRING310, RING310,OsRFPH2-11, OsHIR1,  OsRING123, RING123,OsRFPH2-4,  OsRING91, RING91,OsRFPH2-12,  OsRING176, RING176,OsRFPV-2,  OsRING231, RING231,OsRFPH2-14,  OsRING130, RING130,OsRFPH2-17,  OsRING358, RING358,OsC3H15, OsRFPHC-3,  OsRING268, RING268,OsRFPH2-20,  OsRING144, RING144,OsRFPH2-21,  OsRING247, RING247,OsRFPH2-23,  OsRING146, RING146,OsRFPH2-22,  OsRING38, RING38,XBOS31, OsRFPHC-7,  OsRING222, RING222,OsRFPHC-6,  OsRING99, RING99,OsRFPHC-15,  OsRING186, RING186,OsRFPV-3,  OsRING185, RING185,OsRFPV-4,  OsRING136, RING136,OsRFPV-5,  OsRING235, RING235,OsRFPH2-16, OsGIRP1,  OsRING32, RING32,OsRFPH2-6,  OsRING47, RING47,OsRFPH2-7,  OsRING296, RING296,OsRFPH2-13,OsRFPHC-4,  OsRING205, RING205,OsRFPHC-8,  OsRING114, RING114,OsRFPHC-16,  OsRING322, RING322,OsRFPH2-18,  OsRING175, RING175,OsRFPH2-19,  OsRING373, RING373,OsRFPH2-5, DLN133, OsDLN133,  OsRING36, RING36,OsRFPH2-8,,  OsRING68, RING68,OsRFPHC-5, RFPHC-5,  OsRING404, RING404,OsRFPHC-2, OsRING87, RING87, OsvWA25, vWA25, OsRGLG4, RGLG4,OsRFPV-6,  OsRFPv6, OsRING135, RING135,OsRFPHC-1, OsNLA2, NLA2, OsNLA2.1, OsNLA2.2, OsRING348, RING348,OsRFPH2-9, OsRING129, RING129, OsvWA8, vWA8,OsRFPV-1,  OsRING102, RING102,OsRFPHC-10, RFPHC-10, OsSIP13 ,  OsRING413, RING413,OsRFPHC-14, RFPHC-14, OsSTA9, RIP3, OsRIP3,  OsRING79, RING79,OsRFPHC-9, RFPHC-9, RIP4, OsRIP4,  OsRING75, RING75,OsRFPHC-13, OsNLA, NLA, OsNLA1, OsNLA1.1, OsNLA1.2, OsNLA1.3,  OsRING269, RING269,OsRFPH2-24, OsHRZ2, OsRING150, RING150, CLG1, OsCLG1,OsRFPH2-10, RFPH2-10, OsRFI2, UCIP1, OsUCIP1,  OsRING344, RING344,OsRFPHC-11,  OsRING376, RING376,OsRFPHC-12, RFPHC-12, DLN116, OsDLN116,  OsRING385, RING385,OsRFPH2-15,  OsRING316, RING316, OsvWA6, vWA6,OsRFPV-7, RFPV-7, OsRFPV7, RFPV7, OsRING200, RING200, OsTTL1,OsRFPH2-3,  OsRING217, RING217,OsRFPH2-2,  OsRING323, RING323
36851	23575418	Yamaji N., Xia J.X., Mitani-Ueno N., Yokosho K., Ma J.F.	Preferential delivery of Zn to developing tissues in rice is mediated by a P-type ATPases, OsHMA2.	Plant Physiol.	162(2)	927-39	2013	HMA2,LCT1	OsHMA2, osHMA2, OsHMA2v ,OsLCT1
36852	23566853	Wu P., Shou H., Xu G., Lian X.	Improvement of phosphorus efficiency in rice on the basis of understanding phosphate signaling and homeostasis.	Curr. Opin. Plant Biol.	16(2)	205-12	2013		
36857	23566873	Hsu Y.Y., Chao Y.Y., Kao C.H.	Cobalt chloride-induced lateral root formation in rice: The role of heme oxygenase.	J. Plant Physiol.	170(12)	1075-81	2013	YLC2,SE5	OsHO2, HO2, OsHO-2, HO-2,Se5, OsHO1, OsHO-1, OsHY1, HO-1, HO1, OsSE5, YGL2, YGL2/HO1
36862	23070916	Lan H.X., Wang Z.F., Wang Q.H., Wang M.M., Bao Y.M., Huang J., Zhang H.S.	Characterization of a vacuolar zinc transporter OZT1 in rice (Oryza sativa L.).	Mol. Biol. Rep.	40(2)	1201-10	2013		
36865	23071218	Rose T.J., Impa S.M., Rose M.T., Pariasca-Tanaka J., Mori A., Heuer S., Johnson-Beebout SE., Wissuwa M.	Enhancing phosphorus and zinc acquisition efficiency in rice: a critical review of root traits and their potential utility in rice breeding.	Ann. Bot.	112(2)	331-45	2013		
36870	23064615	Li S., Yan S., Wang A.H., Zou G., Huang X., Han B., Qian Q., Tao Y.	Identification of QTLs associated with tissue culture response through sequencing-based genotyping of RILs derived from 93-11 ~ Nipponbare in rice (Oryza sativa).	Plant Cell Rep.	32(1)	103-16	2013		
36872	23026817	Saika H., Nonaka S., Osakabe K., Toki S.	Sequential monitoring of transgene expression following Agrobacterium-mediated transformation of rice.	Plant Cell Physiol.	53(11)	1974-83	2012		
36876	22922107	Kang Z., Li G., Huang J., Niu X., Zou H., Zang G., Wenwen Y., Wang G.	Photosynthetic and physiological analysis of the rice high-chlorophyll mutant (Gc).	Plant Physiol. Biochem.	60	81-7	2012		
36877	23180670	Chen X., Vega-S?nchez ME., Verhertbruggen Y., Chiniquy D., Canlas P.E., Fagerstr?m A., Prak L., Christensen U., Oikawa A., Chern M., Zuo S., Lin F., Auer M., Willats W.G., Bartley L., Harholt J., Scheller H.V., Ronald P.C.	Inactivation of OsIRX10 leads to decreased xylan content in rice culm cell walls and improved biomass saccharification.	Mol Plant	6(2)	570-3	2013	IRX10	OsIRX10, OsIRX10L, IRX10L
36883	23017909	Duan J., Zhang M., Zhang H., Xiong H., Liu P., Ali J., Li J., Li Z.	OsMIOX, a Myo-inositol oxygenase gene, improves drought tolerance through scavenging of reactive oxygen species in rice (Oryza sativa L.).	Plant Sci.	196	143-51	2012	MIOX	OsMIOX
36891	23251593	Bagnaresi P., Biselli C., Orr? L., Urso S., Crispino L., Abbruscato P., Piffanelli P., Lupotto E., Cattivelli L., Val? G.	Comparative transcriptome profiling of the early response to Magnaporthe oryzae in durable resistant vs susceptible rice (Oryza sativa L.) genotypes.	PLoS ONE	7(12)	e51609	2012		
36892	23131380	Yang C.W., Mousa S.A.	The effect of red yeast rice (Monascus purpureus) in dyslipidemia and other disorders.	Complement Ther Med	20(6)	466-74	2012		
36896	23397013	Gopalakrishnan S., Upadhyaya H., Vadlamudi S., Humayun P., Vidya M.S., Alekhya G., Singh A., Vijayabharathi R., Bhimineni R.K., Seema M., Rathore A., Rupela O.	Plant growth-promoting traits of biocontrol potential bacteria isolated from rice rhizosphere.	Springerplus	1(1)	71	2012		
36899	23271017	Yang G.D., Yan K., Wu B.J., Wang Y.H., Gao Y.X., Zheng C.C.	Genomewide analysis of intronic microRNAs in rice and Arabidopsis.	J. Genet.	91(3)	313-24	2012		
36900	23236132	Zhang X., Wang J., Huang J., Lan H., Wang C., Yin C., Wu Y., Tang H., Qian Q., Li J., Zhang H.	Rare allele of OsPPKL1 associated with grain length causes extra-large grain and a significant yield increase in rice.	Proc. Natl. Acad. Sci. U.S.A.	109(52)	21534-9	2012	GL3.1,_,_	OsPPKL1, PPKL1, qGL3, OsPP54, PP54, OsGL3.1, qGL3/OsPPKL1,OsPPKL2, OsPP73,OsPPKL3, OsPP132
36901	23258571	Wei H., Liu J., Wang Y., Huang N., Zhang X., Wang L., Zhang J., Tu J., Zhong X.	A dominant major locus in chromosome 9 of rice (Oryza sativa L.) confers tolerance to 48C high temperature at seedling stage.	J. Hered.	104(2)	287-94	2013	HTAS	OsHTAS,  OsRING39, RING39
36904	23279104	Long X., Liu Q., Chan M., Wang Q., Sun S.S.	Metabolic engineering and profiling of rice with increased lysine.	Plant Biotechnol. J.	11(4)	490-501	2013		
36906	23630446	Lee S.E., Young-Woong C., Mo H.H., Son J., Park K., Cho K.	Endosulfan-Induced Biomarkers in Japanese Rice Fish (Oryzias latipes) Analyzed by SELDI-TOF-MS.	Int. J. Biol. Sci.	9(4)	343-9	2013		
36907	23468992	Zhang Z., Zhang Q., Wu J., Zheng X., Zheng S., Sun X., Qiu Q., Lu T.	Gene knockout study reveals that cytosolic ascorbate peroxidase 2(OsAPX2) plays a critical role in growth and reproduction in rice under drought, salt and cold stresses.	PLoS ONE	8(2)	e57472	2013	APX2	OsAPX2, OsAPx02, APXb, OsAPx2, OSAPX2, APx2, cAPX, OsAPX1, APX1
36909	23555916	Kim S.I., Tai T.H.	Identification of SNPs in Closely Related Temperate Japonica Rice Cultivars Using Restriction Enzyme-Phased Sequencing.	PLoS ONE	8(3)	e60176	2013		
36911	23334469	Huang J., Kim C.M., Xuan Y.H., Liu J., Kim T.H., Kim B.K., Han C.D.	Formin homology 1 (OsFH1) regulates root-hair elongation in rice (Oryza sativa).	Planta	237(5)	1227-39	2013	_	OsFH1, FH1
36915	23357881	Chen Q., Chen X., Wang Q., Zhang F., Lou Z., Zhang Q., Zhou D.X.	Structural basis of a histone H3 lysine 4 demethylase required for stem elongation in rice.	PLoS Genet.	9(1)	e1003239	2013		
36916	23334472	Lee E.J., Lee B.H., Kim B.K., Lee J.W.	Enhanced production of carboxymethylcellulase of a marine microorganism, Bacillus subtilis subsp. subtilis A-53 in a pilot-scaled bioreactor by a recombinant Escherichia coli JM109/A-53 from rice bran.	Mol. Biol. Rep.	40(5)	3609-21	2013		
36919	23359423	Mukhopadhyay P., Singla-Pareek SL., Reddy M.K., Sopory S.K.	Stress-Mediated Alterations in Chromatin Architecture Correlate with Down-Regulation of a Gene Encoding 60S rpL32 in Rice.	Plant Cell Physiol.	54(4)	528-40	2013		
36925	23404671	Kobayashi H., Ikeda T.M., Nagata K.	Spatial and temporal progress of programmed cell death in the developing starchy endosperm of rice.	Planta	237(5)	1393-400	2013		
36927	23434658	An N., Ou J., Jiang D., Zhang L., Liu J., Fu K., Dai Y., Yang D.	Expression of a functional recombinant human Basic fibroblast growth factor from transgenic rice seeds.	Int J Mol Sci	14(2)	3556-67	2013		
36929	23381954	Takano N., Takahashi Y., Yamamoto M., Teranishi M., Yamaguchi H., Sakamoto A.N., Hase Y., Fujisawa H., Wu J., Matsumoto T., Toki S., Hidema J.	Isolation of a novel UVB-tolerant rice mutant obtained by exposure to carbon-ion beams.	J. Radiat. Res.	54(4)	637-48	2013	_	UTR319
36933	23368984	de Abreu-Neto JB., Turchetto-Zolet AC., de Oliveira LF., Zanettini M.H., Margis-Pinheiro M.	Heavy metal-associated isoprenylated plant protein (HIPP): characterization of a family of proteins exclusive to plants.	FEBS J.	280(7)	1604-16	2013	HPP5,HIPP20,PI21,HIPP16,HIPP40,HIPP56,HIPP27,HIPP54,HPP3,HIPP29,HIPP17,HIPP23,HIPP52,HIPP6,HIPP53,HIPP9,HIPP7,HIPP49,HIPP32,HIPP50,HIPP19,HIPP36,HPP7,HIPP30,HIPP48,HIPP44,HIPP42,HIPP41,HIPP55,HPP4,HIPP11,HIPP4,HIPP51,HIPP14,HIPP21,HIPP1,HIPP58,HIPP12,HIPP18,HIPP8,HIPP43,HIPP34,HIPP57,HPP1,HIPP2,HIPP39,HIPP37,HIPP3,HIPP28,ATX1,HIPP31,HIPP26,_,HIPP46,HPP6,CCH,HIPP10,HIPP38,HIPP24,HPP2,HIPP15,HIPP13,HIPP35,HIPP33,HIPP59,HIPP47,HIPP22,HIPP45,HIPP25	OsHMP22, HMP22, OsHPP5, OsaHPP05, HPP05 ,OsHIPP20, OsaHIP20, HIP20,pi21, rMg40, OsHMP26, HMP26, OsHIPP5, HIPP5, OsaHIP05, HIP05 ,OsHIPP16, OsaHIP16, HIP16,OsHMP44, HMP44, OsHIPP40, OsaHIP40, HIP40 ,OsHMP9, HMP9, OsHMP09, OsHIPP56, OsaHIP56, HIP56 ,OsHIPP27, OsaHIP27, HIP27 ,OsHMP36, HMP36, OsHIPP54, OsaHIP54, HIP54 ,OsHPP3, OsaHPP03, HPP03,OsHMP25, HMP25, OsHIPP29, OsaHIP29, HIP29 ,OsHIPP17, OsaHIP17, HIP17,OsHIPP23, OsaHIP23, HIP23,OsHMP46, HMP46, OsHIPP52, OsaHIP52, HIP52 ,OsHIPP6, OsaHIP06, HIP06,OsHIPP53, OsaHIP53, HIP53,OsHIPP9, OsaHIP09, HIP09,OsHIPP7, OsaHIP07, HIP07,OsHIPP49, OsaHIP49, HIP49,OsEnS-104, OsHMP35, HMP35, OsHIPP32, OsaHIP32, HIP32, HIP7_Ath,OsHMP1, HMP1, OsHMP01, OsHIPP50, OsaHIP50, HIP50 ,OsHIPP19, OsaHIP19, HIP19,OsHMP18, HMP18, OsHIPP36, OsaHIP36, HIP36 ,OsHMP40, HMP40, OsHPP7, OsaHPP07, HPP07,OsHMP28, HMP28, OsHIPP30, OsaHIP30, HIP30 ,OsHMP32, HMP32, OsHIPP48, OsHIPP48, OsaHIP48, HIP48 ,OsHIPP44, OsaHIP44, HIP44,OsHMP24, HMP24, OsHIPP42, OsaHIP42, HIP42 ,OsHMP19, HMP19, OsHIPP41, OsaHIP41, HIP41 ,OsHIPP55, OsaHIP55, HIP55,OsHMP15, HMP15, OsHPP4, OsaHPP04, HPP04 ,OsHIPP11, OsaHIP11, HIP11,OsHIPP4, OsaHIP04, HIP04,OsHMP45, HMP45, OsHIPP51, OsaHIP51, HIP51 ,OsHIPP14, OsaHIP14, HIP14,OsHIPP21, OsaHIP21, HIP21,OsHIPP1, OsaHIP01, HIP01 ,OsHIPP58, OsaHIP58, HIP58,OsHIPP12, OsaHIP12, HIP12,OsHIPP18, OsaHIP18, HIP18,OsHIPP8, OsaHIP08, HIP08,OsHMP3, HMP3, OsHMP03, OsHIPP43, OsaHIP43, HIP43 ,OsHMP23, HMP23, OsHIPP34, OsaHIP34, HIP34 ,OsHMP30, HMP30, OsHIPP57, OsaHIP57, HIP57 ,OsHMP10, HMP10, OsHPP1, OsaHPP01, HPP01 ,OsHIPP2, OsaHIP02, HIP02,OsHMP17, HMP17, OsHIPP39, OsaHIP39, HIP39 ,OsHIPP37, OsaHIP37, HIP37,OsHIPP3, OsaHIP03, HIP03,OsHMP42, HMP42, OsHIPP28, OsaHIP28, HIP28 ,OsATX1, OsaATX1, OsHMP37, HMP37,OsHMP16, HMP16, OsHIPP31, OsaHIP31, HIP31 ,OsHIPP26, OsaHIP26, HIP26,SOD, OsSOD-Cu/Zn, SOD-Cu/Zn, OsaCCS, OsCCS, CCS,OsHMP39, HMP39, OsHIPP46, OsaHIP46, HIP46 ,OsHPP6, OsaHPP06, HPP06,OsATX1, OsCCH, OsaCCH, ATX1, OsHMP14, HMP14,OsHIPP10, OsaHIP10, HIP10,OsHMP2, HMP2, OsHMP02, OsHIPP38, OsaHIP38, HIP38 ,OsHIPP24, OsaHIP24, HIP24,OsHPP2, OsaHPP02, HPP02,OsHIPP15, OsaHIP15, HIP15,OsHIPP13, OsaHIP13, HIP13,OsHMP43, HMP43, OsHIPP35, OsaHIP35, HIP35 ,OsHMP13, HMP13, OsHIPP33, OsaHIP33, HIP33 ,OsHMP38, HMP38, OsHIPP59, OsaHIP59, HIP59 ,OsHMP6, HMP6, OsHMP06, OsHIPP47, OsaHIP47, HIP47,OsHMP29, HMP29, OsHIPP22, OsaHIP22, HIP22 ,OsHMP21, HMP21, OsHIPP45, OsaHIP45, HIP45 ,OsHIPP25, OsaHIP25, HIP25
36936	23394789	Kim S.R., An G.	Rice chloroplast-localized heat shock protein 70, OsHsp70CP1, is essential for chloroplast development under high-temperature conditions.	J. Plant Physiol.	170(9)	854-63	2013	CAB1R,FLO11,HSP70CP1	cab1R, LHCP, CAB, OsLhcb1, Lhcb1, Cab1, OsCAB1, Lhcb1b, OsLhcb1b, CAB2R,OsHsp70CP2, HSP70CP2, OsFLO11, OsFLO11-2, FLO11-2, cpHSP70-2, OsHsp70cp-2, Hsp70cp-2,OsHsp70CP1, cpHSP70-1, OsHsp70cp-1, Hsp70cp-1
36938	23399101	Mutum R.D., Balyan S.C., Kansal S., Agarwal P., Kumar S., Kumar M., Raghuvanshi S.	Evolution of variety-specific regulatory schema for expression of osa-miR408 in indica rice varieties under drought stress.	FEBS J.	280(7)	1717-30	2013		
36945	23553598	Mittal D., Mukherjee S.K., Vasudevan M., Mishra N.S.	Identification of tissue-preferential expression patterns of rice miRNAs.	J. Cell. Biochem.	114(9)	2071-81	2013		
36946	23501875	Zheng H., Li S., Ren B., Zhang J., Ichii M., Taketa S., Tao Y., Zuo J., Wang H.	LATERAL ROOTLESS2, a Cyclophilin Protein, Regulates Lateral Root Initiation and Auxin Signaling Pathway in Rice.	Mol Plant	6(5)	1719-21	2013	IAA23,IAA31,IAA20,ARF16,LRT2	OsIAA23,OsIAA3, IAA3, OsIAA31, OsIAA30, IAA30,OsIAA20,OsARF16,CYC2, cyc2*, cyc2, OsCYP2, Cyp2, OsCYP19-2, CYP19-2, OsCYP-2, OsCyp2-P, OsCyp2, OsCYP19-1, LRT2/OsCYP2, lrt2*, lrt2, Ppcti 
36948	23471133	Li J., Mu J., Bai J., Fu F., Zou T., An F., Zhang J., Jing H., Wang Q., Li Z., Yang S., Zuo J.	PARAQUAT RESISTANT1, a Golgi-Localized Putative Transporter Protein, Is Involved in Intracellular Transport of Paraquat.	Plant Physiol.	162(1)	470-83	2013	PUT3	OsPUT3, OsPUT3.1, OsPAR1, OsLAT5 
36957	23604075	Mispan M.S., Zhang L., Feng J., Gu X.Y.	Quantitative Trait Locus and Haplotype Analyses of Wild and Crop-Mimic Traits in U.S. Weedy Rice.	G3 (Bethesda)	3(6)	1049-59	2013		
36958	23563552	Bao Y., Yanase E., Nakatsuka S.	Isolation of Campesteryl Ferulate and Epi-Campesteryl Ferulate, Two Components of gamma-Oryzanol from Rice Bran.	Biosci. Biotechnol. Biochem.	77(4)	877-9	2013		
36959	23624393	Liang Y.S., Zhan X.D., Wang H.M., Gao Z.Q., Lin Z.C., Chen D.B., Shen X.H., Cao L.Y., Cheng S.H.	Locating QTLs controlling several adult root traits in an elite Chinese hybrid rice.	Gene	526(2)	331-5	2013		
36960	23570690	Abiko M., Maeda H., Tamura K., Hara-Nishimura I., Okamoto T.	Gene expression profiles in rice gametes and zygotes: identification of gamete-enriched genes and up- or down-regulated genes in zygotes after fertilization.	J. Exp. Bot.	64(7)	1927-40	2013	MSRMK2,RPA1,CBSCLC1,_,_,_,_,BEL,_,_,CCR3,_,_,AGP3,CHR735,AHA8,RAP1A,CCH,MET1B,WOX5,_,_,_,_,_,GEX3,FEB1,_,_,_,RPP17,_,_,_,_,_,_,TIP4;1,_,GH9B6,NRFG4,_,WRKY42,CRT3,_,_,SUMO3,WRKY19,_,_,_,_,_,_,_,BZIP34,_,RBOHB,OSCA1.3,RAD21-3,_,MATE34,MGD3	OsMSRMK2, OsMAPK5, OsMAP1, OsMPK3, OsBIMK1, OsMAPK2, MPK5, BIMK1, MAPK2, MAPK5, MPK3, OsMPK5, OsMAPK3, OsMAPK5b, MAPK3,OsRPA1, OsRPA70b, RPA70b,OsCBSCLC1, OsCLC1, CLC1,,,,,bel, bel-a(8077S), bel-b(=bsl, Norin8m), CYP81A6, OsCYP81A6, OsCYP81Q32, CYP81Q32, OsCYP71U8, CYP71U8,OsFDML4, FDML4,,OsCRR3,,,OsAGP3,OsCHR735,  OsRING284, RING284,OSA8, OsA8, A8, osAHA8, AHA8, Os-HA1, OsHA1,OsMADS15, FDRMADS3, RMADS215, MADS15, DEP,OsATX1, OsCCH, OsaCCH, ATX1, OsHMP14, HMP14,OsMET1b, OsMET1-2, MET1b, MET1,OsWOX2, Os WOX2, WOX2, OsWOX5, OsWOX2L, WOX2L,,,,OsRhmbd7, RHMBD7,,OsGEX3,OsFEB1,,,,Rpp17, FIERG1, OsERG1, OsERG1a, OsERG1b, OsC2DP8, C2DP8,,,,,,,OsTIP4;1, TIP4-1,,OsGH9B6,OsRH52A, RH52A, OsNRFG4,,OsWRKY42, WRKY-42,CRT2, OsCRT2, OsCRT3,,,OsSUMO3,OsWRKY19,PEG1, OsPEG1,,OsHSP70, hsp70,,,,OsFbox456, Fbox456, Os_F0543,  OsFBX296, FBX296,OsbZIP34,,rbohB, OsrbohB, Os rbohB, OsRbohB, OsNox1, Nox1, Os-RbohB, RbohB, OsRboh1, Rboh1,OsSTA149, OsOSCA1.3, OsIOSCA1.3, OsDDP5, DDP5, OsDDP5.1,OsRad21-3,,OsMATE34,OsMGD3
36961	23563550	Yamaguchi K., Nakamura Y., Ishikawa K., Yoshimura Y., Tsuge S., Kawasaki T.	Suppression of Rice Immunity by Xanthomonas oryzae Type III Effector Xoo2875.	Biosci. Biotechnol. Biochem.	77(4)	796-801	2013	SERK1,SG2	OsSERK1, OsSERK2, OsBiSERK1, SERK2, BiSERK1, OsSerk2, OsBAK1-2,OsSERK1, SERK1, OsBAK1, BAK1, OsSERK1/OsBAK1, OsBISERK1, BISERK1, OsSerk1, OsBAK1-1, 08SG2/OsBAK1, 08SG2, OsSG2
36963	23137285	Hu Z., He H., Zhang S., Sun F., Xin X., Wang W., Qian X., Yang J., Luo X.	A Kelch motif-containing serine/threonine protein phosphatase determines the large grain QTL trait in rice.	J Integr Plant Biol	54(12)	979-90	2012		
36964	23352405	Pereira E.G., Oliva M.A., Rosado-Souza L., Mendes G.C., Colares D.S., Stopato C.H., Almeida A.M.	Iron excess affects rice photosynthesis through stomatal and non-stomatal limitations.	Plant Sci.	201-202	81-92	2013		
36965	23231646	Wang Y., Lin Y.C., So J., Du Y., Lo C.	Conserved metabolic steps for sporopollenin precursor formation in tobacco and rice.	Physiol Plant	149(1)	13-24	2013	LAP6,DFR2 	OsPKS1, PKS1, YY2, OsPKS21, PKS21, OsLAP6/OsPKS1, OsLAP6, OsCHS22, CHS22,OsTKPR1, TKPR1, OsDFR2, OS-DFR2, OsDFR2A, DFR2A, OsCCRL1, CCRL1
36967	23352410	Lei D., Tan L., Liu F., Chen L., Sun C.	Identification of heat-sensitive QTL derived from common wild rice (Oryza rufipogon Griff.).	Plant Sci.	201-202	121-7	2013		
36971	23216197	Wang W., Chen L.N., Wu H., Zang H., Gao S., Yang Y., Xie S., Gao X.	Comparative proteomic analysis of rice seedlings in response to inoculation with Bacillus cereus.	Lett. Appl. Microbiol.	56(3)	208-15	2013		
36975	23544067	Zhang Y., Wei C., Jiang W., Wang L., Li C., Wang Y., Dow J.M., Sun W.	The HD-GYP Domain Protein RpfG of Xanthomonas oryzae pv. oryzicola Regulates Synthesis of Extracellular Polysaccharides that Contribute to Biofilm Formation and Virulence on Rice.	PLoS ONE	8(3)	e59428	2013		
36978	23322175	Gao Y., Xu H., Shen Y., Wang J.	Transcriptomic analysis of rice (Oryza sativa) endosperm using the RNA-Seq technique.	Plant Mol. Biol.	81(4-5)	363-78	2013		
36981	23384860	Lv Q., Xu X., Shang J., Jiang G., Pang Z., Zhou Z., Wang J., Liu Y., Li T., Li X., Xu J., Cheng Z., Zhao X., Li S., Zhu L.	Functional analysis of Pid3-A4, an ortholog of rice blast resistance gene Pid3 revealed by allele mining in common wild rice.	Phytopathology	103(6)	594-9	2013	PID3	Pi-d3, Pid3, Pi25, Pid3-I1, qBRM6.2
36983	23459234	Ding X., Li X., Xiong L.	Insight into differential responses of upland and paddy rice to drought stress by comparative expression profiling analysis.	Int J Mol Sci	14(3)	5214-38	2013		
36984	23502780	Luo D., Xu H., Liu Z., Guo J., Li H., Chen L., Fang C., Zhang Q., Bai M., Yao N., Wu H., Wu H., Ji C., Zheng H., Chen Y., Ye S., Li X., Zhao X., Li R., Liu Y.G.	A detrimental mitochondrial-nuclear interaction causes cytoplasmic male sterility in rice.	Nat. Genet.	45(5)	573-7	2013	_,_,RF3,COX11	Rf4, Rf-4, PPR782a, PPR9, PPR3,WA352,Rf3* (R2, Rf2), Rf2, R2, Rf3, Rf-3,OsCOX11
36985	23523466	Qiu B., Zeng F., Cai S., Wu X., Haider S.I., Wu F., Zhang G.	Alleviation of chromium toxicity in rice seedlings by applying exogenous glutathione.	J. Plant Physiol.	170(8)	772-9	2013		
36986	23499935	Klaubauf S., Ribot C., Melayah D., Lagorce A., Lebrun M.H., de Vries RP.	The pentose catabolic pathway of the rice-blast fungus Magnaporthe oryzae involves a novel pentose reductase restricted to few fungal species.	FEBS Lett.	587(9)	1346-52	2013		
36987	23507971	Yan W., Liu H., Zhou X., Li Q., Zhang J., Lu L., Liu T., Liu H., Zhang C., Zhang Z., Shen G., Yao W., Chen H., Yu S., Xie W., Xing Y.	Natural variation in Ghd7.1 plays an important role in grain yield and adaptation in rice.	Cell Res.	23(7)	969-71	2013	HD2	Hd2(t), Hd2, qHD2(t), OsPRR37, Os-PRR37, PRR37, Prr4, OsPRR4, DTH7, Os DTH7, OsCCT28, CCT28, Ghd7.1, PRR37/Hd2, EH7-2, EH7-2/Hd2, Hd2/PRR37, PRR37-1a, PRR37-1b, PRR37-1c, PRR37-2a, PRR37- 2, HD7.2
36992	23582455	Zhou S.R., Yin L.L., Xue H.W.	Functional genomics based understanding of rice endosperm development.	Curr. Opin. Plant Biol.	16(2)	236-46	2013		
36995	23050791	Nishizawa-Yokoi A., Nonaka S., Saika H., Kwon Y.I., Osakabe K., Toki S.	Suppression of Ku70/80 or Lig4 leads to decreased stable transformation and enhanced homologous recombination in rice.	New Phytol.	196(4)	1048-59	2012	_,_,RAD51B,BRCA2,BRCA1,RAD50,LIG4,_,RAD51C,MRE11,RAD54,_,RAD51D,KU70,KU80	DSS1/SEM1, DSS1, SEM1,XRCC3, OsXRCC3,OsRAD51B, OsRad51B,OsBRCA2,OsBRCA1,  OsRING285, RING285,Rad50, OsRad50,OsLig4, Lig4,OsMUS81, OsMUS81alpha, OsMUS81beta, ERCC4,OsRAD51C, OsRad51C, RAD51C-1, RAD51C-2, RAD51C-3,OsMRE11, Mre11,OsRAD54, OsRad54, CHR733, OsCHR733,OsRecQl4, RecQl4, OsMed34_1, Med34_1 ,OsRAD51D, OsRad51D, OsRAD51D.1, OsRAD51D.2, OsRAD51D.3,OsKu70, Ku70,OsKu80, Ku80
36999	22921006	Hu F., Kang Z., Qiu S., Wang Y., Qin F., Yue C., Huang J., Wang G.	Overexpression of OsTLP27 in rice improves chloroplast function and photochemical efficiency.	Plant Sci.	195	125-34	2012	TLP27	OsTLP27
37002	23027867	Liu G., Tian H., Huang Y.Q., Hu J., Ji Y.X., Li S.Q., Feng Y.Q., Guo L., Zhu Y.G.	Alterations of mitochondrial protein assembly and jasmonic acid biosynthesis pathway in Honglian (HL)-type cytoplasmic male sterility rice.	J. Biol. Chem.	287(47)	40051-60	2012	ETFBETA,_,_,_,TS2,SODA1	ETFbeta, OsETFbeta,,atp1, atp1-1, ATP1,orfH79, ORFH79,OsTS2,SodA1, OsSODA1, Mn-SOD, Mn- SOD, OsMSD, MnSOD, OsMnSOD, MnSOD1, OsMnSOD1
37005	23073011	Trivedi D., Yadav S., Vaid N., Tuteja N.	Genome wide analysis of Cyclophilin gene family from rice and Arabidopsis and its comparison with yeast.	Plant Signal Behav	7(12)		2012		
37013	23192746	Zong W., Zhong X., You J., Xiong L.	Genome-wide profiling of histone H3K4-tri-methylation and gene expression in rice under drought stress.	Plant Mol. Biol.	81(1-2)	175-88	2013		
37016	23193278	Wang D., Xia Y., Li X., Hou L., Yu J.	The Rice Genome Knowledgebase (RGKbase): an annotation database for rice comparative genomics and evolutionary biology.	Nucleic Acids Res.	41(Database issue)	D1199-205	2013		
37017	23129510	Wu S.F., Huang J., Ye G.Y.	Molecular cloning and pharmacological characterisation of a tyramine receptor from the rice stem borer, Chilo suppressalis (Walker).	Pest Manag. Sci.	69(1)	126-34	2013		
37021	23154534	Wang P., Wan C., Xu Z., Wang P., Wang W., Sun C., Ma X., Xiao Y., Zhu J., Gao X., Deng X.	One Divinyl reductase reduces the 8-vinyl groups in various intermediates of chlorophyll biosynthesis in a given higher plant species, but the isozyme differs between species.	Plant Physiol.	161(1)	521-34	2013	DVR	OsDVR
37023	23136980	Yang X.Y., Zeng Z.H., Yan J.Y., Fan W., Bian H.W., Zhu M.Y., Yang J.L., Zheng S.J.	Association of specific pectin methylesterases with?Al-induced root elongation inhibition in rice.	Physiol Plant	148(4)	502-11	2013	PME27,PME18,PME33,PME7,PME35,PME3,PME9,PME24,PME28,PME30,PME13,PME21,PME20,PME8,PME19,_,PME31,PME15,PME29,PME4,PME6,PME1,PME14,PME16,PME10,PME17,PME23,PME2,PME5,PME22,PME12,PME25,PME26,PME34,PME32	OsPME27,OsPME18,OsPME33,OsPME7,OsPME35,OsPME3,OsPME9,OsPME24,OsPME28,OsPME30,OsPME13,OsPME21,OsPME20, OsEnS-109,OsPME8,OsPME19,OsPME1,OsPME31,OsPME15,OsPME29,OsPME4,OsPME6, OsPME1,OsPME11, PME11, OsPME1,OsPME14,OsPME16,OsPME10,OsPME17,OsPME23,OsPME2,OsPME5,OsPME22,OsPME12,OsPME25,OsPME26,OsPME34,OsPME32, OsSTA270
37025	23129534	Li B., Liu B., Shan C., Ibrahim M., Lou Y., Wang Y., Xie G., Li H.Y., Sun G.	Antibacterial activity of two chitosan solutions and their effect on rice bacterial leaf blight and leaf streak.	Pest Manag. Sci.	69(2)	312-20	2013		
37026	23194296	Zhang D., Lee H.F., Pettit S.C., Zaro J.L., Huang N., Shen W.C.	Characterization of transferrin receptor-mediated endocytosis and cellular iron delivery of recombinant human serum transferrin from rice (Oryza sativa L.).	BMC Biotechnol.	12	92	2012		
37032	23220821	Tsuda K., Akiba T., Kimura F., Ishibashi M., Moriya C., Nakagawa K., Kurata N., Ito Y.	ONION2 fatty acid elongase is required for shoot development in rice.	Plant Cell Physiol.	54(2)	209-17	2013	IAA7,ONI2,ROC1,IAA14	OsIAA7, DLN51, OsDLN51,OsONI2, OsCUT9, CUT9, OsKCS20, KCS20,Roc1(t), GL2-1, OsHDZ23, OsHDZIP23, HDZ23, HDZIP23,OsIAA14, AUX/IAA14, OsAUX/IAA14 
37033	23275199	Zhang X.Q., Hou P., Zhu H.T., Li G.D., Liu X.G., Xie X.M.	Knockout of the VPS22 component of the ESCRT-II complex in rice (Oryza sativa L.) causes chalky endosperm and early seedling lethality.	Mol. Biol. Rep.	40(5)	3475-81	2013	_	OsVPS22
37037	23250448	Chang C.W., Cou?ago RL., Williams S.J., Bod?n M., Kobe B.	Crystal structure of rice importin-alpha and structural basis of its interaction with plant-specific nuclear localization signals.	Plant Cell	24(12)	5074-88	2012	IMPA1A	rImpa1a, Impa1a, Osimpa1, Osimpalpha1, OsImpalpha1a, Impalpha1a
37038	23263792	Moon S., Kim S.R., Zhao G., Yi J., Yoo Y., Jin P., Lee S.W., Jung K.H., Zhang D., An G.	Rice GLYCOSYLTRANSFERASE1 encodes a glycosyltransferase essential for pollen wall formation.	Plant Physiol.	161(2)	663-75	2013	_	OsGT1
37041	23096910	Li W.J., Zhang B., Huang G.W., Kang G.P., Liang M.Z., Chen L.B.	Chloroplast DNA polymorphism and evolutional relationships between Asian cultivated rice (Oryza sativa) and its wild relatives (O. rufipogon).	Genet. Mol. Res.	11(4)	4418-31	2012		
37045	23208453	Khurana R., Kathuria H., Mukhopadhyay A., Kapoor S., Tyagi A.K.	A 286 bp upstream regulatory region of a rice anther-specific gene, OSIPP3, confers pollen-specific expression in Arabidopsis.	Biotechnol. Lett.	35(3)	455-62	2013	OSIPP3	OsPMEI24, PMEI24
37047	23483945	Baek S.H., Shin W.C., Ryu H.S., Lee D.W., Moon E., Seo C.S., Hwang E., Lee H.S., Ahn M.H., Jeon Y., Kang H.J., Lee S.W., Kim S.Y., D'Souza R., Kim H.J., Hong S.T., Jeon J.S.	Creation of resveratrol-enriched rice for the treatment of metabolic syndrome and related diseases.	PLoS ONE	8(3)	e57930	2013		
37063	23199012	Fanata W.I., Lee K.H., Son B.H., Yoo J.Y., Harmoko R., Ko K.S., Ramasamy N.K., Kim K.H., Oh D.B., Jung H.S., Kim J.Y., Lee S.Y., Lee K.O.	N-glycan maturation is crucial for cytokinin-mediated development and cellulose synthesis in Oryza sativa.	Plant J.	73(6)	966-79	2013	CESA7,RR6,GLCNACTI,ND1,BC7,CESA3,RR2,RR4	OsCesA7, OsCESA7, OS_CESA07, OsCesA 7, CesA7,OsRR6, rr6, Rra6, OsRRA6,GlcNAc-TI, OsGlcNAc-TI, GnTI, OsGnTI,CSLD4, OsCSLD4, OsCD1, CD1, DNL3, OsDNL3, NRL1, OsNRL1, SPO1, OsSPO1, SPO1/OsCSLD4,OsCesA4, OsCESA4, CESA4, OS_CESA04, BC11, bc7t, Bc7(t), bc-7, OsCesA 4, CesA4, FC17/CESA4, FC17, OsFC17,OsCesA3, OsCESA3, OS_CESA03,rr2, Osrr2, OsRR2, Rra10, OsRRA10,rr4, OsRR4, Rra3, OsRRA3
37065	23417074	Septiningsih E.M., Ignacio J.C., Sendon P.M., Sanchez D.L., Ismail A.M., Mackill D.J.	QTL mapping and confirmation for tolerance of anaerobic conditions during germination derived from the rice landrace Ma-Zhan Red.	Theor. Appl. Genet.	126(5)	1357-66	2013		
37067	23411694	Xu J., Yang J., Wu Z., Liu H., Huang F., Wu Y., Carrie C., Narsai R., Murcha M., Whelan J., Wu P.	Identification of a dual-targeted protein belonging to the mitochondrial carrier family that is required for early leaf development in rice.	Plant Physiol.	161(4)	2036-48	2013	_	OsPAPST1
37068	23498867	Campos N., Casta??n S., Urreta I., Santos M., Torn? JM.	Rice transglutaminase gene: Identification, protein expression, functionality, light dependence and specific cell location.	Plant Sci.	205-206	97-110	2013	_	TGO, tgo
37070	23400832	Lin C.Y., Trinh N.N., Fu S.F., Hsiung Y.C., Chia L.C., Lin C.W., Huang H.J.	Comparison of early transcriptome responses to copper and cadmium in rice roots.	Plant Mol. Biol.	81(4-5)	507-22	2013		
37071	23365013	Zhang L.W., Huang J.F., Guo R.F., Li X.X., Sun W.B., Wang X.Z.	Spatio-temporal reconstruction of air temperature maps and their application to estimate rice growing season heat accumulation using multi-temporal MODIS data.	J Zhejiang Univ Sci B	14(2)	144-61	2013		
37073	23382235	Ryder L.S., Dagdas Y.F., Mentlak T.A., Kershaw M.J., Thornton C.R., Schuster M., Chen J., Wang Z., Talbot N.J.	NADPH oxidases regulate septin-mediated cytoskeletal remodeling during plant infection by the rice blast fungus.	Proc. Natl. Acad. Sci. U.S.A.	110(8)	3179-84	2013		
37075	23408830	Liu M.Y., Chen W.W., Xu J.M., Fan W., Yang J.L., Zheng S.J.	The role of VuMATE1 expression in aluminium-inducible citrate secretion in rice bean (Vigna umbellata) roots.	J. Exp. Bot.	64(7)	1795-804	2013		
37077	23527858	Yoeun S., Rakwal R., Han O.	Dual positional substrate specificity of rice allene oxide synthase-1: insight into mechanism of inhibition by type II ligand imidazole.	BMB Rep	46(3)	151-6	2013	AOS2	OsAOS2, CYP74A2, OsAOS, OsAOS1
37079	23537632	Liu C., Teo Z.W., Bi Y., Song S., Xi W., Yang X., Yin Z., Yu H.	A conserved genetic pathway determines inflorescence architecture in Arabidopsis and rice.	Dev. Cell	24(6)	612-22	2013		
37084	23632162	Yi X., Du Z., Su Z.	PlantGSEA: a gene set enrichment analysis toolkit for plant community.	Nucleic Acids Res.	41(Web Server issue)	W98-103	2013		
37088	23591851	Wang Q., Liu Y., Hu J., Zhang Y., Xie K., Wang B., Tuyen le Q., Song Z., Wu H., Liu Y., Jiang L., Liu S., Cheng X., Wang C., Zhai H., Wan J.	Detection of Quantitative Trait Loci (QTLs) for Resistances to Small Brown Planthopper and Rice Stripe Virus in Rice Using Recombinant Inbred Lines.	Int J Mol Sci	14(4)	8406-21	2013		
37089	23633166	Lanka S.K., Stout M.J., Beuzelin J.M., Ottea J.A.	Activity of chlorantraniliprole and thiamethoxam seed treatments on life stages of the rice water weevil as affected by distribution of insecticides in rice plants.	Pest Manag. Sci.			2013		
37092	23605590	Songbai Z., Zhenguo D., Liang Y., Zhengjie Y., Kangcheng W., Guangpu L., Zujian W., Lianhui X.	Identification and characterization of the interaction between viroplasm-associated proteins from two different plant-infecting reoviruses and eEF-1A of rice.	Arch. Virol.	158(10)	2031-9	2013	RFA1	rfa1*, REFA1, refa1, OseEF-1A, eEF-1A, Osef1a1
37094	23621499	Liu D., Cai X.	OsRRMh, a Spen-like Gene, Plays an Important Role during the Vegetative to Reproductive Transition in Rice.	J Integr Plant Biol	55(9)	876-87	2013	HD3A,_,RFT1,RAP1B,_	Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,OsRRM,FT-L 3, OsFTL3, FTL3, FT-L3, RFT, OsRFT1,MADS14, OsMADS14, FDRMADS6, RMADS211, AGL10,OsRRMh, RRMh
37095	23118960	Huang J., Zhao X., Weng X., Wang L., Xie W.	The rice B-box zinc finger gene family: genomic identification, characterization, expression profiling and diurnal analysis.	PLoS ONE	7(10)	e48242	2012	_,_,BBX6,BBX20,BBX15,_,_,_,_,_,_,BBX12,RNG1,BBX17,STO,BBX28,BBX10,BBX8,BBX3,BBX7,_,_,BBX23,SE1,DTH2,COL15,BBX25,CO3,BBX9	OsBBX21, BBX21,OsBBX13, BBX13, OsRIP1, RIP1,OsBBX6,OsBBX20, OsE, OsCCT23, CCT23,OsBBX15, OsCCT19, OsS, OsSTA162, CCT19, STA162,OsBBX1, OsDBB3c, BBX1, DBB3c,OsBBX2, BBX2,OsBBX14, BBX14, OsDBB3b, DBB3b,OsBBX24, BBX24,OsBBX30, BBX30,OsBBX29, OsDBB1, BBX29, DBB1, DLN230, OsDLN230,OsBBX12, OsC, OsCCT16, CCT16,OsBBX4, BBX4, OsSTH, STH, OsRNG1,OsBBX17, OsL, OsCCT20, CCT20, OsCOL16, COL16,OsBBX11, OsSTO, BBX11, BBX24, OsBBX24,OsBBX28, OsCCT32, OsQ, CCT32,OsBBX10, OsJ, OsCCT14, OsCOL10, COL10, OsCOL9, CCT14, COL9,OsBBX8, OsK, OsCCT09, OsGhd2, OsK/Ghd2, CCT09, Ghd2,OsBBX3, OsF, OsCCT05, CCT05,OsN, OsBBX7, OsCCT08, OsCCT8, OsDTH2, CCT08, CCT8, DTH2,OsBBX16, OsDBB3a, BBX16, DBB3a,OsBBX22, BBX22,OsBBX23, OsCCT27, CCT27, OsR, OsCOL13, COL13,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, OsHd1,  Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,OsBBX19, BBX19, OsM, OsDTH2, qDTH-2, OsCCT22, CCT22,OsBBX26, BBX26, OsO, OsCCT30, CCT30, OsCOL15, OsCOL15/OsBBX26, Hd1-3,OsBBX25, OsG, OsCCT29, CCT29,OsB, OsCO3, OsBBX27, OsCO3/OsB, OsCCT31, CO3, BBX27, CCT31,OsP, OsBBX9, OsCCT12, CCT12
37097	23048130	Nguyen H.C., Hoefgen R., Hesse H.	Improving the nutritive value of rice seeds: elevation of cysteine and methionine contents in rice plants by ectopic expression of a bacterial serine acetyltransferase.	J. Exp. Bot.	63(16)	5991-6001	2012		
37104	22957820	Zhao S., Poulin L., Rodriguez-R LM., Serna N.F., Liu S.Y., Wonni I., Szurek B., Verdier V., Leach J.E., He Y.Q., Feng J.X., Koebnik R.	Development of a variable number of tandem repeats typing scheme for the bacterial rice pathogen Xanthomonas oryzae pv. oryzicola.	Phytopathology	102(10)	948-56	2012		
37105	23311133	Zhou Z., Lin Z., Geng L., Su J., Shu C., Wang F., Zhu Y., Zhang J.	[Comparison of codon optimizations of cry1Ah1 gene in rice].	Sheng Wu Gong Cheng Xue Bao	28(10)	1184-94	2012		
37106	23078195	Verdier V., Triplett L.R., Hummel A.W., Corral R., Cernadas R.A., Schmidt C.L., Bogdanove A.J., Leach J.E.	Transcription activator-like (TAL) effectors targeting OsSWEET genes enhance virulence on diverse rice (Oryza sativa) varieties when expressed individually in a TAL effector-deficient strain of Xanthomonas oryzae.	New Phytol.	196(4)	1197-207	2012	XA13,XA41	xa13, Xa13, Os8N3, Os-8N3, 8N3, OsSWEET11, SWEET11, OsSWEET11/Xa13, Xa13/Os8N3/SWEET11, Os8N3/Xa13, OsSWEET11/Os8N3, OsSWEET11a, SWEET11a,OsSWEET14, SWEET14, Os11N3, Os-11N3, 11N3, Xa41(t), xa41, Os11N3/SWEET14, OsSWEET14/Os11N3
37107	23072575	Samalova M., Johnson J., Illes M., Kelly S., Fricker M., Gurr S.	Nitric oxide generated by the rice blast fungus Magnaporthe oryzae drives plant infection.	New Phytol.	197(1)	207-22	2013		
37109	23160806	Sarkar N.K., Thapar U., Kundnani P., Panwar P., Grover A.	Functional relevance of J-protein family of rice (Oryza sativa).	Cell Stress Chaperones	18(3)	321-31	2013	_,_,_,_,_,_,_,ERDJ3B,_,_,_,_,_,_,DJC22,_,_,_,_,_,_,ISC26,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,NAL11,_,_,_,_,_,_,_,_,_,DJA6,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,DJC4,DJA8,DJA5,BPH33,DJC14,DJA9,DJC53,_,_,_	OsDjC16, OsP58A,OsDjC15, OsP58B,OsDjB9, OsSTA211,OsDjC37,OsDjC23,OsDjC20,OsDjC39,OsDjB6, OsERdj3B, ERdj3B,OsDjC46,OsDjC21,OsDjC31,OsDjC32,OsDjC33,OsDjC34,OsDjC22, DjC22,OsDjC35,OsDjC41,OsDjC66,OsDjC9,OsDjC42,OsDjC44,OsDjC80, OsISC26,OsDjC49,OsDjC73,OsDjC43, OsERdj2,OsDjC51,OsDjC50,OsDjC82, DjC82, XB21,OsDjC52,OsDjC59,OsDjC65,OsDjC68,OsDjC69,OsDjC70,OsDjC71,OsDjC72,OsDjC74,OsDjC75,OsDjC67,OsDjC58, DjC58, OsHSP40, HSP40, LM7, OsLM7,OsDjC77,OsDjC83,OsDjC79, OsERdj7,OsDjC47,OsDjC81,OsDjC56,OsDjC13,OsDjA2,OsDjC78,OsDjA6, DjA6,OsDjC36,OsDjC64,OsDjC24,OsDjC25,OsDjC26,OsDjC28,OsDjC29,OsDjC30,OsDjC38,OsDjC40,OsDjC54,OsDjC55,OsDjC57,OsDjC48, DjC48,OsDjC62,OsDjC63,OsDjA1,OsDjA11,OsDjA12,OsDjB1,OsDjB2,OsDjB3,OsDjB4,OsDjB5,OsDjB8,OsDjC2,OsDjC3,OsDjC5,OsDjC6,OsDjC7,OsDjC8,OsDjC11,OsDjC17,OsDjC18,OsDjC19,OsDjC1,OsDjC60,OsDjC76,OsDjC12,OsDjA3,OsDjC27,OsDjA10,OsDjC61,OsDjB7, DjB7,OsDjC4,OsDjA8, DjA8,OsDjA5,OsDjC10, DjC10, Bph33(t), Bph33,OsDjC14,OsDjA9, DjA9,OsDjC53, DjC53,OsDjA7, OsDnaJ,OsDjC45,OsDjA4, YDJ1
37113	23147221	Wang Y., Zhang X., Lu S., Wang M., Wang L., Wang W., Cao F., Chen H., Wang J., Zhang J., Tu J.	Inhibition of a basal transcription factor 3-like gene Osj10gBTF3 in rice results in significant plant miniaturization and typical pollen abortion.	Plant Cell Physiol.	53(12)	2073-89	2012	EIF3H,_,PPR920,EIF3E,10GBTF3,PPR676,_,HSP82B	eIF-3h, OseIF3h,Osj3g2BTF3, BTF3b, Os03g2BTF3,OsPPR920, OsPPR939, PPR939,eIF-3e, OseIF3e,Osj10gBTF3, 10gBTF3, Os10gBTF3, BTF3a, OsBTF3a,OsPPR676, OsATP4, ATP4,Osj3g1BTF3, BTF3a, Os03g1BTF3,OsHSP82, hsp82B, HSP82
37115	23155476	Zhang X., Li J., Liu A., Zou J., Zhou X., Xiang J., Rerksiri W., Peng Y., Xiong X., Chen X.	Expression profile in rice panicle: insights into heat response mechanism at reproductive stage.	PLoS ONE	7(11)	e49652	2012		
37120	23202292	Vijayakumar K.R., Gowda L.R.	Rice (Oryza sativa) lipase: molecular cloning, functional expression and substrate specificity.	Protein Expr. Purif.	88(1)	67-79	2013		
37121	23122787	Shimajiri Y., Ozaki K., Kainou K., Akama K.	Differential subcellular localization, enzymatic properties and expression patterns of gamma-aminobutyric acid transaminases (GABA-Ts) in rice (Oryza sativa).	J. Plant Physiol.	170(2)	196-201	2013		
37123	23139845	Kawahara Y., Oono Y., Kanamori H., Matsumoto T., Itoh T., Minami E.	Simultaneous RNA-seq analysis of a mixed transcriptome of rice and blast fungus interaction.	PLoS ONE	7(11)	e49423	2012		
37125	23145152	Shaik R., Ramakrishna W.	Bioinformatic analysis of epigenetic and microRNA mediated regulation of drought responsive genes in rice.	PLoS ONE	7(11)	e49331	2012		
37126	23203890	Pan B., Sheng J., Sun W., Zhao Y., Hao P., Li X.	OrysPSSP: a comparative platform for small secreted proteins from rice and other plants.	Nucleic Acids Res.	41(Database issue)	D1192-8	2013		
37134	23251660	Desaki Y., Otomo I., Kobayashi D., Jikumaru Y., Kamiya Y., Venkatesh B., Tsuyumu S., Kaku H., Shibuya N.	Positive crosstalk of MAMP signaling pathways in rice cells.	PLoS ONE	7(12)	e51953	2012		
37139	23227161	Nischal L., Mohsin M., Khan I., Kardam H., Wadhwa A., Abrol Y.P., Iqbal M., Ahmad A.	Identification and comparative analysis of microRNAs associated with low-N tolerance in rice genotypes.	PLoS ONE	7(12)	e50261	2012		
37142	23243128	Wang M., Tang D., Luo Q., Jin Y., Shen Y., Wang K., Cheng Z.	brk1, a Bub1-related kinase, is essential for generating proper tension between homologous kinetochores at metaphase I of rice meiosis.	Plant Cell	24(12)	4961-73	2012	_,SGO1,CENH3	BRK1,OsSGO1,OsCENH3, CenH3
37144	23559856	Lin Y.R., Mok H.K., Wu Y.H., Liang S.S., Hsiao C.C., Huang C.H., Chiou S.H.	Comparative proteomics analysis of degenerative eye lenses of nocturnal rice eel and catfish as compared to diurnal zebrafish.	Mol. Vis.	19	623-37	2013		
37145	23324170	Sawaki N., Tsujimoto R., Shigyo M., Konishi M., Toki S., Fujiwara T., Yanagisawa S.	A Nitrate-Inducible GARP Family Gene Encodes an Auto-Repressible Transcriptional Repressor in Rice.	Plant Cell Physiol.	54(4)	506-17	2013	NIGT1	OsNIGT1, HINGE6, OsHINGE6
37154	23331415	Wu J., Wang Y., Kim S.T., Kim S.G., Kang K.Y.	Characterization of a newly identified rice chitinase-like protein (OsCLP) homologous to xylanase inhibitor.	BMC Biotechnol.	13	4	2013	_,_	OsXIP, XIP,OsCLP, CLP
37155	23460823	Han C., Yin X., He D., Yang P.	Analysis of proteome profile in germinating soybean seed, and its comparison with rice showing the styles of reserves mobilization in different crops.	PLoS ONE	8(2)	e56947	2013		
37160	23314754	Naika M., Shameer K., Mathew O.K., Gowda R., Sowdhamini R.	STIFDB2: an updated version of plant stress-responsive transcription factor database with additional stress signals, stress-responsive transcription factor binding sites and stress-responsive genes in Arabidopsis and rice.	Plant Cell Physiol.	54(2)	e8	2013		
37161	23194343	Nahar K., Kyndt T., Hause B., H?fte M., Gheysen G.	Brassinosteroids suppress rice defense against root-knot nematodes through antagonism with the jasmonate pathway.	Mol. Plant Microbe Interact.	26(1)	106-15	2013		
37162	23333961	Voothuluru P., Thompson H.J., Flint-Garcia SA., Sharp R.E.	Genetic variability of oxidase oxalate activity and elongation in water-stressed primary roots of diverse maize and rice lines.	Plant Signal Behav	8(3)		2013		
37164	23361014	Zheng A., Lin R., Zhang D., Qin P., Xu L., Ai P., Ding L., Wang Y., Chen Y., Liu Y., Sun Z., Feng H., Liang X., Fu R., Tang C., Li Q., Zhang J., Xie Z., Deng Q., Li S., Wang S., Zhu J., Wang L., Liu H., Li P.	The evolution and pathogenic mechanisms of the rice sheath blight pathogen.	Nat Commun	4	1424	2013		
37170	23602094	Shelley I.J., Nishiuchi S., Shibata K., Inukai Y.	SLL1, which encodes a member of the stearoyl-acyl carrier protein fatty acid desaturase family, is involved in cell elongation in lateral roots via regulation of fatty acid content in rice.	Plant Sci.	207	12-7	2013		
37172	23442150	Mishra K.K., Vikram P., Yadaw R.B., Swamy B.M., Dixit S., Cruz M.T., Maturan P., Marker S., Kumar A.	qDTY12.1: a locus with a consistent effect on grain yield under drought in rice.	BMC Genet.	14	12	2013		
37179	23625520	Wang G., Li H., Cheng Z., Jin W.	A novel translocation event leads to a recombinant stable chromosome with interrupted centromeric domains in rice.	Chromosoma	122(4)	295-303	2013		
37180	23621326	Nagasawa N., Hibara K.I., Heppard E.P., Vander Velden KA., Luck S., Beatty M., Nagato Y., Sakai H.	GIANT EMBRYO, encoding CYP78A13, affects size balance between embryo and endosperm in rice.	Plant J.	75(4)	592-605	2013	RE1,RE2,GE1	re1,re2,ge1, ge, CYP78A13, OsCYP78A13, GE, BG2, GES, OsGE/CYP78B5, CYP78B5, OsCYP78B5
37187	23627500	Campo S., Peris-Peris C., Sir? C., Moreno A.B., Donaire L., Zytnicki M., Notredame C., Llave C., San Segundo B.	Identification of a novel microRNA (miRNA) from rice that targets an alternatively spliced transcript of the Nramp6 (Natural resistance-associated macrophage protein 6) gene involved in pathogen resistance.	New Phytol.	199(1)	212-27	2013	NRAMP6,MIR7693,MIR7694,MIR7695,MIR7692,MIR1437B	OsNRAMP6, Nramp6, l-NRAMP6, s-NRAMP6, OsNramp6.8, OsNramp1,miR7693, osa-miR7693, osa-MIR7693,miR7694, osa-miR7694, osa-MIR7694,miR7695, osa-miR7695, osa-MIR7695,miR7692, osa-miR7692, osa-MIR7692,miR1437b, osa-miR1437b, osa-MIR1437b
37190	23589608	Yang D.L., Yang Y., He Z.	Role of plant hormones and their cross-talks in rice immunity.	Mol Plant	6(3)	675-85	2013	NH1,NRR,WRKY45,COI1,GID1,MSRMK2,SLR1	OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2, DLN5, OsDLN5,  OsBTBA1, BTBA1,OsNRR, OsNRR1, NRR1,OsWRKY45, OsWRKY45-1, OsWRKY45-2, WRKY45-1, WRKY45-2,OsCOI1a, OsCOI1, Os_F0728, COI1a, F0728,  OsFBL4, FBL4,gid1, OsGID1, Thl, Os GID1,OsMSRMK2, OsMAPK5, OsMAP1, OsMPK3, OsBIMK1, OsMAPK2, MPK5, BIMK1, MAPK2, MAPK5, MPK3, OsMPK5, OsMAPK3, OsMAPK5b, MAPK3,slr1-1, slr1, slr, GAI, OsGAI, OsSLR1, Os SLR1, OsRGA1, OsGRAS-18, OsGRAS-18, GRAS-18, GRAS18, SLR-1
37191	23548780	Hudson D., Guevara D.R., Hand A.J., Xu Z., Hao L., Chen X., Zhu T., Bi Y.M., Rothstein S.J.	Rice Cytokinin GATA Transcription Factor1 Regulates Chloroplast Development and Plant Architecture.	Plant Physiol.	162(1)	132-44	2013	CGA1	Cga1, OsCga1, OsCGA1, OsGATA11, GATA11
37192	23578473	Yang W., Duan L., Chen G., Xiong L., Liu Q.	Plant phenomics and high-throughput phenotyping: accelerating rice functional genomics using multidisciplinary technologies.	Curr. Opin. Plant Biol.	16(2)	180-7	2013		
37193	23597919	Wang X., Ike M., Shiroma R., Tokuyasu K., Sakakibara Y.	Expression of neutral beta-glucosidase from Scytalidium thermophilum in Candida glabrata for ethanol production from alkaline-pretreated rice straw.	J. Biosci. Bioeng.	116(3)	362-5	2013		
37199	22930426	Rana R.M., Dong S., Ali Z., Huang J., Zhang H.S.	Regulation of ATG6/Beclin-1 homologs by abiotic stresses and hormones in rice (Oryza sativa L.).	Genet. Mol. Res.	11(4)	3676-87	2012	ATG6A,ATG6B,ATG6C	OsATG6a,OsATG6b, OsATG6c,OsATG6c, OsATG6b
37204	23278238	Xuan Y.H., Priatama R.A., Huang J., Je B.I., Liu J.M., Park S.J., Piao H.L., Son D.Y., Lee J.J., Park S.H., Jung K.H., Kim T.H., Han C.D.	Indeterminate domain 10 regulates ammonium-mediated gene expression in rice roots.	New Phytol.	197(3)	791-804	2013	AMT1;2,NKD,GDH2	OsAMT1;2, AMT1-2, Osamt1-3, "OsAMT1,3", OsAMT1;3, OsAMT1.3, OsAMT1.2, AMT1.2,IDD10, OsIDD10, OsNKD, OsZOS4-11, ZOS4-11,OsGDH2
37205	23233223	Naren, Zhang P., Ma D., Wang Y., Li S., Yin L.	Overexpression of OsDPR, a novel rice gene highly expressed under iron deficiency, suppresses plant growth.	Sci China Life Sci	55(12)	1082-91	2012	_	OsDPR
37206	23264228	Sarkar N.K., Kundnani P., Grover A.	Functional analysis of Hsp70 superfamily proteins of rice (Oryza sativa).	Cell Stress Chaperones	18(4)	427-37	2013		
37207	23341965	Daebeler A., Gansen M., Frenzel P.	Methyl fluoride affects methanogenesis rather than community composition of methanogenic archaea in a rice field soil.	PLoS ONE	8(1)	e53656	2013		
37208	23319183	He Y., Zhang Y., Wang S., Zeng H., Ding Y.	Characterization of a novel glutelin subunit OsGluBX by the experimental approach and molecular dynamics simulations.	Appl. Biochem. Biotechnol.	169(5)	1482-96	2013	GLUBX	OsGluBX, OsGluBX-J, OsGluBX-I, OsEnS-31, EnS-31, GLU2.1, GluB7, OsGluB7, GluB4, OsGluB4
37209	23294545	Choe Y.H., Kim Y.S., Kim I.S., Bae M.J., Lee E.J., Kim Y.H., Park H.M., Yoon H.S.	Homologous expression of gamma-glutamylcysteine synthetase increases grain yield and tolerance of transgenic rice plants to environmental stresses.	J. Plant Physiol.	170(6)	610-8	2013	_	OsECS, ECS, GSH2, OsGSH2
37212	23338673	Li Y., Chen W., Shi Y., Liang X.	Molecular cloning and evolutionary analysis of the HOG-signaling pathway genes from Saccharomyces cerevisiae rice wine isolates.	Biochem. Genet.	51(3-4)	296-305	2013		
37213	23386293	Purkayastha A., Sharma S., Dasgupta I.	Virus-induced gene silencing for rice using agroinoculation.	Methods Mol. Biol.	975	33-45	2013		
37216	23613738	Zhai R., Feng Y., Zhan X., Shen X., Wu W., Yu P., Zhang Y., Chen D., Wang H., Lin Z., Cao L., Cheng S.	Identification of Transcriptome SNPs for Assessing Allele-Specific Gene Expression in a Super-Hybrid Rice Xieyou9308.	PLoS ONE	8(4)	e60668	2013		
37221	23531043	Zhou J., Yang Y., Wang X., Yu F., Yu C., Chen J., Cheng Y., Yan C., Chen J.	Enhanced transgene expression in rice following selection controlled by weak promoters.	BMC Biotechnol.	13	29	2013		
37225	23430047	Yuan M., Wang S.	Rice MtN3/Saliva/SWEET Family Genes and Their Homologs in Cellular Organisms.	Mol Plant	6(3)	665-74	2013		
37227	23613580	Rodrigues J.A., Ruan R., Nishimura T., Sharma M.K., Sharma R., Ronald P.C., Fischer R.L., Zilberman D.	Imprinted expression of genes and small RNA is associated with localized hypomethylation of the maternal genome in rice endosperm.	Proc. Natl. Acad. Sci. U.S.A.	110(19)	7934-9	2013	ROS1B,AGO14,PYL/RCAR8,TA2	OsROS1B,OsAGO14,OsPYL/RCAR8, PYL8, OsPYL8, OsPYL9, PYL9, CAPIP1,ROS1A, ROS1a, DME1, OsROS1A, OsROS1, ROS1, mOsROS1, ROS1A/DNG702, DNG702, OsDNG702
37228	23613199	Liu Y., Cui S., Wu F., Yan S., Lin X., Du X., Chong K., Schilling S., Thei?en G., Meng Z.	Functional Conservation of MIKC*-Type MADS Box Genes in Arabidopsis and Rice Pollen Maturation.	Plant Cell	25(4)	1288-303	2013	MADS63,MADS68,MADS62	OsMADS63,OsMADS68,OsMADS62
37232	23034647	Huang X., Kurata N., Wei X., Wang Z.X., Wang A., Zhao Q., Zhao Y., Liu K., Lu H., Li W., Guo Y., Lu Y., Zhou C., Fan D., Weng Q., Zhu C., Huang T., Zhang L., Wang Y., Feng L., Furuumi H., Kubo T., Miyabayashi T., Yuan X., Xu Q., Dong G., Zhan Q., Li C., Fujiyama A., Toyoda A., Lu T., Feng Q., Qian Q., Li J., Han B.	A map of rice genome variation reveals the origin of cultivated rice.	Nature	490(7421)	497-501	2012		
37233	23201415	Shao C., Ma X., Xu X., Meng Y.	Identification of the highly accumulated microRNA*s in Arabidopsis (Arabidopsis thaliana) and rice (Oryza sativa).	Gene	515(1)	123-7	2013	MIR396A,MIR1428F,MIR169g,MIR396B,MIR1433,MIR2121A,MIR810A,MIR5159,MIR5533,MIR169P	miR396a, osa-miR396a, osa-MIR396aosa-miR396a-3p osa-miR396a-5p, OsmiR396a,miR1428f, osa-miR1428f, osa-MIR1428f,MIR-169g, osa-MIR169g,miR396b, osa-miR396b, osa-MIR396bosa-miR396b-3p osa-miR396b-5p, OsmiR396b,miR1433, osa-miR1433, osa-MIR1433,miR2121a, osa-miR2121a, osa-MIR2121a,miR810a, osa-miR810a, osa-MIR810a,miR5159, osa-miR5159, osa-MIR5159,miR5533, osa-miR5533, osa-MIR5533,miR169p, osa-miR169p, miR169-p
37238	23362379	Fang S., Clark R.T., Zheng Y., Iyer-Pascuzzi AS., Weitz J.S., Kochian L.V., Edelsbrunner H., Liao H., Benfey P.N.	Genotypic recognition and spatial responses by rice roots.	Proc. Natl. Acad. Sci. U.S.A.	110(7)	2670-5	2013		
37243		Mach J.	The Direct Approach: Resistance Genes Team up to Recognize Different Fungal Effectors in Rice.	Plant Cell	25(4)	1189	2013	RGA5,RGA4	Os11gRGA5, OsRGA5, RGA5-A, RGA5-B, Pi5, Pias-2,Os11gRGA4, OsRGA4, Pias-1
37245	23619785	Ma H.	A battle between genomes in plant male fertility.	Nat. Genet.	45(5)	472-3	2013	RF3,_,COX11,_	Rf3* (R2, Rf2), Rf2, R2, Rf3, Rf-3,WA352,OsCOX11,Rf4, Rf-4, PPR782a, PPR9, PPR3
37246	23580618	Topp C.N., Iyer-Pascuzzi AS., Anderson J.T., Lee C.R., Zurek P.R., Symonova O., Zheng Y., Bucksch A., Mileyko Y., Galkovskyi T., Moore B.T., Harer J., Edelsbrunner H., Mitchell-Olds T., Weitz J.S., Benfey P.N.	3D phenotyping and quantitative trait locus mapping identify core regions of the rice genome controlling root architecture.	Proc. Natl. Acad. Sci. U.S.A.	110(18)	E1695-704	2013		
37247	0	Yeu S.Y., Park B.S., Sang W.G., Choi Y.D., Kim M.C., Song J.T., Paek N-C, Koh H-J, Seo H.S.	The Serine proteinase inhibitor OsSerpin Is a Potent Tillering Regulator in Rice	Journal of Plant Biology	50(5)	600-604	2007	FC1,_	fc1, OsTB1, tb1, OsTB1/FC1, Os TB1, TB1, OsFC1, MP3, OsMP3,OsSRP-LRS, OsSPN, OrysaZxa
37248	18060440	Thomas H Roberts, J?Crn Hejgaard	Serpins in plants and green algae.	Funct. Integr. Genomics	8(1)	1-27	2008	_,_,_,_,_,_,_,_,_,_,_,_,_	OsSRP-GMS, OrysaZ5,OsSRP-PSG, OrysaZ8,OsSRP-FLC, OrysaZ2b,OsSRP-GRA, OrysaZ6b,OsSRP-GAA, OrysaZ6a,OsSRP-FRS, OrysaZxb,OsSRP-LGC, OrysaZ1,OsSRP-QKG, OrysaZ12,OsSRP-FAS, OrysaZ6c,OsSRP-PTY, OrysaZ10,OsSRP-LLS, OrysaZ2a,OsSRP-LRS, OsSPN, OrysaZxa,OsSRP-PGY, OrysaZ11
37249	18540109	Kumagai T., Ito S., Nakamichi N., Niwa Y., Murakami M., Yamashino T., Mizuno T.	The common function of a novel subfamily of B-Box zinc finger proteins with reference to circadian-associated events in Arabidopsis thaliana.	Biosci. Biotechnol. Biochem.	72(6)	1539-49	2008	_,_,STO,RNG1,_,_	OsBBX1, OsDBB3c, BBX1, DBB3c,OsBBX29, OsDBB1, BBX29, DBB1, DLN230, OsDLN230,OsBBX11, OsSTO, BBX11, BBX24, OsBBX24,OsBBX4, BBX4, OsSTH, STH, OsRNG1,OsBBX16, OsDBB3a, BBX16, DBB3a,OsBBX14, BBX14, OsDBB3b, DBB3b
37250	15055541	Chan-Ho Park, Kim S., Ju-Young Park, Il-Pyung Ahn, Nam-Soo Jwa, Kyung-Hwan Im, Yong-Hwan Lee	Molecular characterization of a pathogenesis-related protein 8 gene encoding a class III chitinase in rice.	Mol. Cells	17(1)	144-50	2004	CHIB1,CHIB2	Oschib1, chib1, PR-8, PR8, OsPR8, OsPR8b, PR8b,Oschib2
37251	12466527	Pandey R., Andreas M??ller, Carolyn A Napoli, David A Selinger, Craig S Pikaard, Eric J Richards, Bender J., David W Mount, Richard A Jorgensen	Analysis of histone acetyltransferase and histone deacetylase families of Arabidopsis thaliana suggests functional diversification of chromatin modification among multicellular eukaryotes.	Nucleic Acids Res.	30(23)	5036-55	2002	_,HDT701,SRT701	osHDA702,OsHDT1, HDT701, OsHDT701, ZOS5-12, OsZOS5-12, HDT1,osSRT701, OsSIRT701, OsSRT1, SRT1, OS-SIR2
37252	0	Oliver S.N., Dongen J.V., Alfred S.C., Mamun E, Zhao X, Saini H.S., Fernandes S.F., Blanchard C.L., Sutton B.G., Geigenberger P, Dennis E.S., Dolferus R	Cold-induced repression of the rice anther-specific cell wall invertase gene OSINV4 is correlated with sucrose accumulation and pollen sterility	Plant, Cell and Environment	28	1534-1551	2005	CIN3,CIN1,_,SMS2,INV1	OSINV4, OsINV4, INV4, OsCIN3,OSCIN1, OsCIN1,OSINV2, OsINV2, OsVIN1, VIN1,INV3, OSINV3, OsINV3, OsVIN2, VIN2, VINV, OsSMS2,OSINV1, OsINV1, OsCIN7, OsCIN8
37253	17379695	Tokunaga T., Esaka M.	Induction of a novel XIP-type xylanase inhibitor by external ascorbic acid treatment and differential expression of XIP-family genes in rice.	Plant Cell Physiol.	48(5)	700-14	2007	_,_,RIXI 	riceXIP,OsXIP, XIP,C10701
37254	15794761	Durand A., Hughes R., Roussel A., Flatman R., Henrissat B., Juge N.	Emergence of a subfamily of xylanase inhibitors within glycoside hydrolase family 18.	FEBS J.	272(7)	1745-55	2005	RIXI 	C10701
37255	22267741	Withers S., Lu F., Kim H., Zhu Y., Ralph J., Wilkerson C.G.	Identification of grass-specific enzyme that acylates monolignols with p-coumarate.	J. Biol. Chem.	287(11)	8347-55	2012	PMT	OsAT4, OsAt4, AT4, OsPMT, OsAT4/PMT, OsAT4/PMT1, OsAT4/OsPMT1, OsPMT1
37256	12834401	Bao-Cai Tan, Leina M Joseph, Wen-Tao Deng, Liu L., Qin-Bao Li, Cline K., Donald R McCarty	Molecular characterization of the Arabidopsis 9-cis epoxycarotenoid dioxygenase gene family.	Plant J.	35(1)	44-56	2003	NCED2,NCED3	OSNCED2, OsNCED2, OsNCED5, NCED5,OSNCED3, OsNCED-3, OsNCED3, OsNCED3a, NCED3a, OsNCED4, NCED4, OsNECD2, OsNCED2b, NCED2b 
37257	15817418	Ivan A Paponov, William D Teale, Trebar M., Blilou I., Palme K.	The PIN auxin efflux facilitators: evolutionary and functional perspectives.	Trends Plant Sci.	10(4)	170-7	2005	PIN9,PIN4,PIN5B,PIN1B,LRA1,PIN5A,PIN10B,PIN10A,PIN1A	OsPIN9,OsPIN4,PIN5C, OsPIN5c, OsPIN5b, PIN4,PIN1A, OsPIN1A, OsPIN1a, REH1, OsPIN1, OsPIN1b, REH1/OsPIN1,OsPIN2, PIN2, OsLRA1, WAR1, OsWAR1,OsPIN5a, OsPIN6,PIN3B, OsPIN3b, OsPIN10b,PIN3A, OsPIN3a, OsPIN3t, OsPIN10a, OsPIN3,PIN1C, OsPIN1C, OsPIN1c, OsPIN1a
37258	16844839	Carraro N., Forestan C., Canova S., Traas J., Varotto S.	ZmPIN1a and ZmPIN1b encode two novel putative candidates for polar auxin transport and plant architecture determination of maize.	Plant Physiol.	142(1)	254-64	2006	PIN9,PIN4,PIN5B,PIN5A,PIN1B,PIN10A,PIN1A,LRA1,PIN10B	OsPIN9,OsPIN4,PIN5C, OsPIN5c, OsPIN5b, PIN4,OsPIN5a, OsPIN6,PIN1A, OsPIN1A, OsPIN1a, REH1, OsPIN1, OsPIN1b, REH1/OsPIN1,PIN3A, OsPIN3a, OsPIN3t, OsPIN10a, OsPIN3,PIN1C, OsPIN1C, OsPIN1c, OsPIN1a,OsPIN2, PIN2, OsLRA1, WAR1, OsWAR1,PIN3B, OsPIN3b, OsPIN10b
37259	20528920	ChenJia Shen, YouHuang Bai, SuiKang Wang, SaiNa Zhang, YunRong Wu, Chen M., DeAn Jiang, YanHua Qi	Expression profile of PIN, AUX/LAX and PGP auxin transporter gene families in Sorghum bicolor under phytohormone and abiotic stress.	FEBS J.	277(14)	2954-69	2010	PIN9,ABCB19,RAU1,MDR15,MDR16,MDR14,MDR17,ABCB13,MDR7,PIN5A,MDR1,ABCB12,MDR12,MDR10,MDR6,MDR13,PIN1A,PIN8,PIN1D,PIN5B,PIN1C,PIN10B,RAU3,RAU2,PIN5C,RAU4,PIN10A,PIN1B,ABCB10,LRA1,_,MDR4,MDR5,MDR9,MDR8,ABCB9,MDR11,MDR3,ABCB18	OsPIN9,OsABCB19, OsPGP19,OsLAX1, OsRAU1, OsAUX1, LAX1, AUX1,OsABCB20, ABCB20, OsPGP20, OsMDR15,OsABCB21, ABCB21, OsPGP21, OsMDR16,OsABCB22, ABCB22, OsPGP22, OsMDR14,OsABCB7, ABCB7, OsPGP7, OsMDR17,OsABCB13, OsPGP13,MDR4, OsABCB5, ABCB5, OsPGP5, OsMDR7, OsISC28, MRP4, OsMRP4, OsABCB11, ABCB11, MR7, OsMR7,OsPIN5a, OsPIN6,OsABCB15, ABCB15, OsPGP15, OsMDR1, OsMDR2, MDR2, OsSTA125,OsABCB12, OsPGP12, PGP12,OsABCB16, ABCB16, OsPGP16, OsMDR12,OsABCB8, ABCB8, OsPGP8, OsMDR10, OsISC29,OsABCB2, ABCB2, OsPGP2, OsMDR6, OsABCB2_1, OsABCB2_2,OsABCB14, ABCB14, OsPGP14, OsMDR13, OsABCB14_1, OsABCB14_2,PIN1C, OsPIN1C, OsPIN1c, OsPIN1a,OsPIN8,OsPIN1D, OsPIN1d,PIN5C, OsPIN5c, OsPIN5b, PIN4,PIN1B, OsPIN1B, OsPIN1b, OsPIN1c,PIN3B, OsPIN3b, OsPIN10b,OsLAX3, OsRAU3, OsAUX2, LAX3, AUX2, OsAUX3, AUX3, ARF2,OsLAX2, OsRAU2, OsAUX3, LAX2, AUX3 ,PIN5B, OsPIN5b, OsPIN5c,OsLAX4, OsRAU4, OsAUX4, LAX4, AUX4,PIN3A, OsPIN3a, OsPIN3t, OsPIN10a, OsPIN3,PIN1A, OsPIN1A, OsPIN1a, REH1, OsPIN1, OsPIN1b, REH1/OsPIN1,OsABCB10, OsPGP10,OsPIN2, PIN2, OsLRA1, WAR1, OsWAR1,OsLAX5, OsAUX5, LAX5, AUX5,OsABCB1, ABCB1, OsPGP1, OsMDR4,OsABCB3, ABCB3, OsPGP3, OsMDR5, OsISC34,OsABCB4, ABCB4, OsPGP4, OsMDR9, OsISC30,OsABCB6, ABCB6, OsPGP6, OsMDR8, OsISC31,OsABCB9, OsPGP9, OsISC33,OsABCB11, ABCB11, OsPGP11, OsMDR11, OsABCB11_1, OsABCB11_2,OsABCB17, ABCB17, OsPGP17, OsMDR3, OsABCB17_1,OsABCB18, OsPGP18, OsABCB18_1, OsABCB18_2
37260	0	Shams F.D., Kuddus M.M.A., Nasiruddin K.M., Begum S.N., Islam M.M.	Genetic Analysis of Aromatic and Quality Rice Germplasm using Microsatellite Markers	Plant Tissue Cult. & Biotech.	22(1)	65-71	2012	SK2(T)(SCL, FGR)	sk2(t)(scl, fgr), fgr, scl, BAD2, BADH2, sk2, OsBADH2, Badh2, badh2, Os2AP, BADH-2, OsALDH10A8, ALDH10A8 
37261	19947981	Yoshida T., Fujita Y., Sayama H., Kidokoro S., Maruyama K., Mizoi J., Shinozaki K., Kazuko Yamaguchi-Shinozaki	AREB1, AREB2, and ABF3 are master transcription factors that cooperatively regulate ABRE-dependent ABA signaling involved in drought stress tolerance and require ABA for full activation.	Plant J.	61(4)	672-85	2010	BZIP23,BZIP72,BZIP46	OsbZIP23, OsAREB1, OsABF2, Osbzip23, OsAREB2, OsZIP23, ZIP23,OsbZIP72, OsAREB2, OsABF4, ABF4, Osbzip72, OsABI5, ABI5,ABL1, bZIP46, OsABL1, OsbZIP46, OsAREB8, OsABF2, ABF2, OsABF3, ABF3, OsbZIP46CA1, OsZIP46, ZIP46, OsbZIP46/OsABF2
37262	16598073	Ji Hyun Yang, So Jeong Han, Eun Kyung Yoon, Woo Sung Lee	'Evidence of an auxin signal pathway, MicroRNA167-ARF8-GH3, and its response to exogenous auxin in cultured rice cells'.	Nucleic Acids Res.	34(6)	1892-9	2006	GH3-2,ARF8,MIR167A,ARF6A,MIR167B	OsGH3-2, OsGH3.2, GH3.2,OsARF8, OsARF12, ARF12,miR167a, osa-miR167aosa-miR167a-3p osa-miR167a-5p, OsmiR167a,OsARF6a, OsARF6, ARF6,miR167b, osa-miR167b
37263	12101121	Brenda J Reinhart, Earl G Weinstein, Matthew W Rhoades, Bartel B., David P Bartel	MicroRNAs in plants.	Genes Dev.	16(13)	1616-26	2002	MIR164A,MIR171,MIR160A,MIR156A,MIR169,MIR162A,MIR166A,MIR167A	miR164a, osa-miR164a,miR171, osa-miR171, miR171a, osa-miR171a, osa-MIR171a,miR160a, osa-miR160a, osa-MIR160aosa-miR160a-3p osa-miR160a-5p, OsMIR160a ,miR156a, OsmiR156a, osmiR156a, osa-miR156a, osa-MIR156a,miR169, osa-miR169, osa-MIR169a, miR169a, osa-miR169a,miR162a, osa-miR162a, osa-MIR162a, OsMIR162a,miR166a, osa-miR166aosa-miR166a-3p osa-miR166a-5p,miR167a, osa-miR167aosa-miR167a-3p osa-miR167a-5p, OsmiR167a
37264	12202040	Matthew W Rhoades, Brenda J Reinhart, Lee P Lim, Christopher B Burge, Bartel B., David P Bartel	Prediction of plant microRNA targets.	Cell	110(4)	513-20	2002	MIR171,MIR169	miR171, osa-miR171, miR171a, osa-miR171a, osa-MIR171a,miR169, osa-miR169, osa-MIR169a, miR169a, osa-miR169a
37265	15856348	Jain M., Kaur N., Akhilesh K Tyagi, Jitendra P Khurana	The auxin-responsive GH3 gene family in rice (Oryza sativa).	Funct. Integr. Genomics	6(1)	36-46	2006	GH3-2,GH3-11,JAR2,GH3-4,GH3-10,LC1,GH3-6,JAR3,GH3-8,GH3-9,JAR1,GH3-7	OsGH3-2, OsGH3.2, GH3.2,OsGH3-11, OsGH3.11, GH3.11,OsJAR2, OsGH3.3, GH3.3, OsGH3-3, JAR2/GH3-3, GH3-3, OsGH3.3/OsJAR2,OsGH3-4, OsGH3.4, GH3.4,OsGH3-10,OsGH3-1, GH3-1, OsGH3.1,GH3.1, OsLC1,OsGH3-6, OsGH3.6, GH3.6,OsJAR3, OsGH3.12, GH3.12, OsGH3-12, GH3-12,OsGH3-8, OsMGH3, OsGH3.8, GH3.8, OsGH3-2,OsGH3-9,OsJAR1, OsGH3.5, GH3.5, OsGH3-5, GH3-5,OsGH3-7
37266	20129631	S??lvia B Rosa, Andr??ia Caverzan, Felipe K Teixeira, Lazzarotto F., Joaquim A G Silveira, S??rgio Luiz Ferreira-Silva, Jo?o Abreu-Neto, Rog??rio Margis, M??rcia Margis-Pinheiro	Cytosolic APx knockdown indicates an ambiguous redox responses in rice.	Phytochemistry	71(5-6)	548-58	2010	APX1,APX2	OsAPX1, APXa, OsAPXa, OsAPx01, OsAPx1, OSAPX1, APx1, cAPX, APX2, cAPXa, OscAPXa,OsAPX2, OsAPx02, APXb, OsAPx2, OSAPX2, APx2, cAPX, OsAPX1, APX1
37267	20644566	Shu-Qing Zhao, Hu J., Long-Biao Guo, Qian Q., Hong-Wei Xue	Rice leaf inclination2, a VIN3-like protein, regulates leaf angle through modulating cell division of the collar.	Cell Res.	20(8)	935-47	2010	VIL1,VIL3,VIL4,LC2	OsVIL1, OsVIL2,OsVIL3, OsVIL4, VIL1,OsVIL4, OsVIL1,OsLC2, OsVIL2, VIL2, OsVIL3
37268	0	Yoshie Y, Goto K, Takai R, Iwano M, Takayama S, Isogai A, Che F.S.	Function of the rice gp91phox homologs OsrbohA and OsrbohE genes in ROS-dependent plant immune responses	Plant Biotechnology	22(2)	127-135	2005	RBOHF,RBOHA,RBOHG,CHT1,RBOHC	RbohF, rbohF, OsrbohF, Os rbohF, OsNox6, Nox6, OsrbohE, rbohE, OsRboh6, Rboh6,rbohA, OsrbohA, Os rbohA, OsRbohA, OsNox2, Nox2, OsRboh2, Rboh2,rbohG, OsrbohG, Os rbohG, OsRbohG, OsNox7, Nox7, OsrbohB, OsRBOHB, RBOHB, OsRboh7, Rboh7,Cht1*(Chi1), Ch16, Cht1, CHT-1, CH16, RC24, OsChia1a, OsChia1, Chi1, Cht1*, Chi-1, Cht-1, Cht1, RCC1, OsCht-1, PR3, OsPR3,rbohC, OsrbohC, Os rbohC, OsRbohC, OsNox5, Nox5, OsrbohD, OsRboh5, RBOHA, OsRboh5, Rboh5
37269	12582522	Abe T., Niiyama H., Sasahara T.	Cloning of cDNA for UDP-glucose pyrophosphorylase and the expression of mRNA in rice endosperm.	Theor. Appl. Genet.	105(2-3)	216-221	2002	UGP1	Ugp1, OsUgp1, UGP2, UGP3
37270	9435140	A Shintani, H Kato, T Minamikawa	Hormonal regulation of expression of two cysteine endopeptidase genes in rice seedlings.	Plant Cell Physiol.	38(11)	1242-8	1997	REP1	REP-1, OsREP-1, OsREP1, OsSAG12-1, SAG12-1, OsEnS-21
37271	15549374	Cao X., Li K., Sang-Gon Suh, Guo T., Philip W Becraft	Molecular analysis of the CRINKLY4 gene family in Arabidopsis thaliana.	Planta	220(5)	645-57	2005	CRR1,MIS2,CRR2,CCR3,CRR4	OsCRR1,OsCR4, CR4, OsMIS2,OsCRR2,OsCRR3,OsCRR4
37272	15619004	E Gelhaye, N Rouhier, N Navrot, J P Jacquot	The plant thioredoxin system.	Cell. Mol. Life Sci.	62(1)	24-35	2005	TRXH,TRXH4,TRXH2,TRXH8,TRXH5	trxh, Trx-H, OsTRXh1, TRXh1, OsTrxh1, Os1, OsTrx23, Trx23, RPP13-1,OsTRXh4, OsTrx10, Trx10, Os3, OsTrxh3,OsTRXh2, Os2, OsTrxh2,OsTRXh8, OsTrx18, Trx18, Os5, OsTrxh5,OsTRXh5, OsTrx24, Trx24, Os4, OsTrxh4
37273	9599802	Y Ishiwatari, T Fujiwara, K C McFarland, K Nemoto, H Hayashi, M Chino, W J Lucas	Rice phloem thioredoxin h has the capacity to mediate its own cell-to-cell transport through plasmodesmata.	Planta	205(1)	12-22	1998	TRXH	trxh, Trx-H, OsTRXh1, TRXh1, OsTrxh1, Os1, OsTrx23, Trx23, RPP13-1
37274	16170456	Chardon F., Damerval C.	Phylogenomic analysis of the PEBP gene family in cereals.	J. Mol. Evol.	61(5)	579-90	2005	RFT1,RCN1,FTL6,FTL9,MFT1,FTL1,MFT2,FTL4,FTL7,FTL10,FTL8,FTL5,FTL11,FTL12,FTL13,RCN4,RCN2,RCN3,HD3A	FT-L 3, OsFTL3, FTL3, FT-L3, RFT, OsRFT1,Rcn1, FDR2, Fdr2, RCN1/FDR2, OsRCN1,FT-L 6, OsFTL6, FT-L6,OsFTL9, OsFT-L9, FT-L9,OsMFT1,FTL, FT-L1, OsFTL1, FTL1,OsMFT2, OsMFT,OsFT, osFT, FT-L 4, OsFTL4, FT-L4, FT-1, OsFT-1,FT-L 7, OsFTL7,OsFTL10,FT-L 8, OsFTL8,FT-L 5, OsFTL5, FT-L5,OsFTL11,OsFTL12, FT-L11,OsFTL13,Rcn4, OsRCN4,Rcn2, OsRCN2,Rcn3, OsRCN3, RCN3/FDR1, FDR1, Fdr1, OsFDR1,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a 
37275	0	Sharma H.C., Crouch J.H., Sharma K.K., Seetharama N, Hash C.T.	Applications of biotechnology for crop improvement: prospects and constraints.	Plant Science	163	381-395	2002	PIKH	Pi-kh, Pi k-h, Pi54, Pi54rh, Pi-k(h), Pik-h, Pikh
37276	0	Kumari A., A.Das, B.N.Devanna, Thakur S., P.K.Singh, N.K.Singh, T.R.Sharma	Mining of rice blast resistance gene Pi54 shows effect of single nucleotide polymorphisms on phenotypic expression of the alleles	Eur. J. Plant Pathol	137	55-65	2013	PIKH	Pi-kh, Pi k-h, Pi54, Pi54rh, Pi-k(h), Pik-h, Pikh
37277	0	Rai A.K., Kumar S.P., Gupta S.K., Gautam N., Singhm N.K., Sharma T.R.	Functional complementation of rice blast resistance gene Pi-kh(Pi54) conferring resistance to diverse strains of Magnaporthe oryzae	J. Plant Biochem. Biotechnol.	20	55-65	2011	PIKH	Pi-kh, Pi k-h, Pi54, Pi54rh, Pi-k(h), Pik-h, Pikh
37279	0	Li Y.B., Wu C.J., Jiang G.H., Wang L.Q., He Y.Q.	Dynamic analyses of rice blast resistance for the assessment of genetic and environmental effects.	Plant Breeding	126	541-547	2007	PIKM	Pik-m, Pi-m, Pi-km, Pikm, Pi m, Pikm1-TS, Pikm2-TS, Pi-km1, Pi-km2
37280	15247399	David L Remington, Todd J Vision, Thomas J Guilfoyle, Jason W Reed	Contrasting modes of diversification in the Aux/IAA and ARF gene families.	Plant Physiol.	135(3)	1738-52	2004	IAA13,IAA9	OsIAA13, OsIAA1, OsiIAA1,OsIAA9, OsIAA2
37281	19665012	Ken-Ichiro Hibara, Obara M., Hayashida E., Abe M., Ishimaru T., Satoh H., Jun-Ichi Itoh, Nagato Y.	The ADAXIALIZED LEAF1 gene functions in leaf and embryonic pattern formation in rice.	Dev. Biol.	334(2)	345-54	2009	ADL1,ADS	OsADL1,ads
37282	20331531	Oono Y., Wakasa Y., Hirose S., Yang L., Sakuta C., Takaiwa F.	Analysis of ER stress in developing rice endosperm accumulating beta-amyloid peptide.	Plant Biotechnol. J.	8(6)	691-718	2010	PDIL1-3,PDIL2-1,PDIL1-5,PDIL5-3,PDIL5-4,PDIL5-1,PDIL1-4,PDIL1-2,PDIL2-3,PDIL1-1,PDIL2-2,PDIL5-2	PDIL1;3, PDIL 1-3, OsPDIL1-3, OsTrx07, Trx07, OsTrx7, Trx7,PDIL2;1, OsPDIL2;1, OsPDIL2-1, OsTrx17, Trx17,PDIL1;5, PDIL 1-5, OsPDIL1-5, OsTrx21, Trx21,PDIL5;3, PDIL 5-3, OsPDIL5-3, OsTrx06, Trx06, OsTrx6, Trx6,PDIL5;4, OsPDIL5;4, PDIL 5-4, OsPDIL5-4,PDIL5;1, OsPDIL5;1, PDIL 5-1, OsPDIL5-1, OsTrx09, Trx09, OsTrx9, Trx9,PDIL1;4, PDIL 1-4, OsPDIL1-4, OsTrx05, Trx05, OsTrx5, Trx5,PDIL1;2, OsPDIL1;2, PDIL 1-2, OsPDIL1-2, OsTrx13, Trx13,PDIL2;3, OsPDIL2;3, PDIL 2-3, OsPDIL2-3, OsTrx27, Trx27,OsPDIL1;1, PDIL1;1, PDIL 1-1, PDI, OsPDIL1-1, OsTrx28, Trx28,PDIL2;2, OsPDIL2;2, OsPDIL2-2, OsTrx02, Trx02, OsTrx2, Trx2,PDIL5;2, OsPDIL5;2, OsPDIL5-2, OsTrx12, Trx12
37283	20532512	Takahashi Y., Cong R., G H M Sagor, Niitsu M., Berberich T., Kusano T.	Characterization of five polyamine oxidase isoforms in Arabidopsis thaliana.	Plant Cell Rep.	29(9)	955-65	2010	PAO4,PAO1,PAO3,PAO7,PAOB,PAO5	OsPAO4, OsAO1, AO1,OsPAO1, OsAO4, AO4,OsPAO3, OsAO3, AO3,OsPAO7, OsPAO3, PAO3,PAOb, OsPAOb, OsPAO6, OsPAO2, PAO6, PAO2,OsPAO5, OsAO2, AO2
37284	20561251	Hyeong Cheol Park, Kim H., Sung Cheol Koo, Hee Jin Park, Mi Sun Cheong, Hong H., Baek D., Woo Sik Chung, Doh Hoon Kim, Ray A Bressan, Sang Yeol Lee, Hans J Bohnert, Dae-Jin Yun	Functional characterization of the SIZ/PIAS-type SUMO E3 ligases, OsSIZ1 and OsSIZ2 in rice.	Plant Cell Environ.	33(11)	1923-34	2010	SIZ1,SIZ2	OsSIZ1, OsSIZ1.1, OsSIZ1.2, OsSIZ1.3, DLN131, OsDLN131, OsPHD23, PHD23,OsSIZ2
37285	20193128	Chaikam V., Dale T Karlson	Response and transcriptional regulation of rice SUMOylation system during development and stress conditions.	BMB Rep	43(2)	103-9	2010	SUMO2,SIZ1,SCE2,SAE2,SUMO1,_,UBC3,SUMO3,SIZ2,_	OsSUMO2,OsSIZ1, OsSIZ1.1, OsSIZ1.2, OsSIZ1.3, DLN131, OsDLN131, OsPHD23, PHD23,OsSce2, Sce2, OsUBC2, UBC2, OsSCE1a, SCE1a, OsSCE1a.1, OsSCE1a.2,OsSAE2, OsSAE2.1, OsSAE2.2, OsSAE2.3,smt3, SMT3, OsSUMO1,OsSce1, OsUBC1, UBC1, OsSCE1b, SCE1b, OsSCE1b.1, OsSCE1b.2,OsUBC3, OsSCE1c, SCE1c, OsSCE1c.1, OsSCE1c.2, OsSCE3, SCE3,OsSUMO3,OsSIZ2,OsSAE1a
37286	18299247	Paul J Verrier, Bird D., Burla B., Dassa E., Forestier C., Geisler M., Klein M., Kolukisaoglu U., Lee Y., Martinoia E., Murphy A., Philip A Rea, Samuels L., Schulz B., Edgar J Spalding, Yazaki K., Frederica L Theodoulou	Plant ABC proteins--a unified nomenclature and updated inventory.	Trends Plant Sci.	13(4)	151-9	2008	ABCB19,MDR16,MDR14,ABCE2,ABCG19,ABCG22,ABCG24,ABCG23,ABCG25,ABCI1,ABCI5,ABCI3_1,ABCI4,ABCA2,PDR11,PDR10,ABCI2,ABCG16,ABCG28,ALS1,MRP4,ABCG18,MRP1,ABCG29,PDR4,ABCG26,TSC1,ABCG21,ESG1,ABCI6,STAR1,ABCG30,MDR1,MDR12,MDR10,MDR17,ABCB12,MRP13,ABCG17,MDR9,ABCG15,MDR13,MDR6,ABCG27,MRP7,MRP2,PDR8,ABCI3,ABCG20,PDR5,ABCG13,ABCG4,ABCB9,ABCB10,MDR15,ABCB13,MDR7,ABCG6,ABCB24,ABCI9,ABCI11,ABCI13,ABCI14,ABCI15,ABCI16,MRP10,MRP12,MRP14,MRP16,MRP17,PDR3,PDR7,PDR15,PDR16,PDR17,PDR19,PDR23,ABCB26,ABCB27,ABCA3,ABCA4,ABCA5,ABCA6,ABCD1,ABCD2,ABCD3,PDR2,ABCB23,PDR6,PDR22,_,MRP9,ARG1 ,PDR1,ABCG5,MRP11,PDR12,MRP3,MRP15,ABCG3,ABCA1,MRP5,ABCE1,ABCF1,ABCF2,ABCF3,ABCF4,ABCF5,ABCF6,ABCG1,ABCG2,ABCG7,ABCG8,ABCG9,ABCG10,ABCG11,ABCG12,ABCG14,MRP8,PDR14,PDR21,MRP6,MDR4,MDR5,MDR8,MDR11,MDR3,ABCB18	OsABCB19, OsPGP19,OsABCB21, ABCB21, OsPGP21, OsMDR16,OsABCB22, ABCB22, OsPGP22, OsMDR14,OsABCE2, RLI,OsABCG19, OsABCG19_1, OsABCG19_2,OsABCG22,OsABCG24,OsABCG23,OsABCG25, OsABCG25_1, OsABCG25_2,OsABCI1,OsABCI5, OsISC16,OsABCI3_1, OsABCI3_2, OsISC17,OsABCI4, OsISC18,OsABCA2, OsISC27,OsABCG35, OsPDR11, OsPDR2,OsABCG34, OsPDR10, OsPDR1,OsABCI2,OsABCG16, OsABCG16_1, OsABCG16_2, OsSTA183,OsABCG28, OsSTA255,OsALS1, OsABCB25, ABCB25,OsABCC4, ABCC4, OsMRP4,OsABCG18,OsABCC1, ABCC1, OsABCC1-1, OsABCC1-2, OsMRP1,OsABCG29,OsABCG40, ABCG40, OsPDR4,OsABCG26,ABCI7, OsABCI7, OsABCI7_1, OsABCI7_2, OsABCI8, ABCI8, OsABCI8.1, OsABCI8.2, OsCNL1, CNL1, OsTSC1, TSC1.1, TSC1.2,OsABCG21, STR1, OsSTR1,ABCI10, OsABCI10, OsABCI10_1, OsABCI10_2, OsESG1,OsABCI6, OsABCI7, ABCI7,OsENA2, OsABCI12, ENA2, ABCI12, OsSTAR1, OsSATR1,OsABCG30,OsABCB15, ABCB15, OsPGP15, OsMDR1, OsMDR2, MDR2, OsSTA125,OsABCB16, ABCB16, OsPGP16, OsMDR12,OsABCB8, ABCB8, OsPGP8, OsMDR10, OsISC29,OsABCB7, ABCB7, OsPGP7, OsMDR17,OsABCB12, OsPGP12, PGP12,OsABCC13, OsMRP13, OsMRP5,OsABCG17,OsABCB4, ABCB4, OsPGP4, OsMDR9, OsISC30,OsABCG15, PDA, PDA1, OsABCG15/PDA1,OsABCB14, ABCB14, OsPGP14, OsMDR13, OsABCB14_1, OsABCB14_2,OsABCB2, ABCB2, OsPGP2, OsMDR6, OsABCB2_1, OsABCB2_2,OsABCG27,OsABCC7, OsMRP7,OsABCC2, OsMRP2,OsPDR8, PDR4, P0410E03.16, OsABCG37, OsPDR4,OsABCI3,OsABCG20,ABCG43, OsABCG43, ABCG43/PDR5, OsPDR5,OsABCG13, OsABCG13_1, OsABCG13_2,OsABCG4, OsABCG22, ABCG22,OsABCB9, OsPGP9, OsISC33,OsABCB10, OsPGP10,OsABCB20, ABCB20, OsPGP20, OsMDR15,OsABCB13, OsPGP13,MDR4, OsABCB5, ABCB5, OsPGP5, OsMDR7, OsISC28, MRP4, OsMRP4, OsABCB11, ABCB11, MR7, OsMR7,OsABCG6,OsABCB24,OsABCI9, OsABCI9_1, OsABCI9_2,OsABCI11,OsABCI13,OsABCI14,OsABCI15,OsABCI16, OsABCI16_1, OsABCI16_2,OsABCC10, OsMRP10,OsABCC12, OsMRP12,OsABCC14, OsMRP14, OsABCC14-1, OsABCC14-2,OsABCC16, OsMRP16,OsABCC17, OsMRP17,OsABCG48, OsPDR3,OsABCG39, OsPDR7,OsABCG38, OsPDR15,OsABCG32, OsPDR16,OsABCG44, OsPDR17,OsABCG47, OsPDR19,OsABCG50, OsPDR23, OsABCG50_1, OsABCG50_2,OsABCB26,OsABCB27,OsABCA3,OsABCA4,OsABCA5,OsABCA6,OsABCD1, OsABCD1_1, OsABCD1_2,OsABCD2,OsABCD3,ABCG41, OsABCG41, OsPDR2, OsABCG41_1, OsABCG41_2,OsABCB23, OsISC32, OsATM3, ATM3,OsPDR6, OsABCG31, OsABCG31_1,OsABCG49, OsPDR22, OsABCG49_1, OsABCG49_2,OsPDR20, RDR20,OsABCC9, ABCC9, OsMRP9, OsABCC14, ABCC14 ,ABCI8, OsABCI8, OsABCI9, ABCI9, OsARG1 ,OsABCG45, OsPDR1, FCO1, OsPDR1.2, OsPDR1.3, OsPDR1.1,OsABCG5,OsABCC11, ABCC11, OsMRP11, OsABCC8,OsABCG42, ABCG42, OsPDR12, OsABCG42_1, OsABCG42_2,OsABCC3, ABCC3, OsMRP3,OsABCC15, OsMRP15,OsABCG3,OsABCA1,OsABCC5, OsMRP5, AB3C_Ath ,OsABCE1, OsABCE1_1, OsABCE1_2,OsABCF1, OsABCF1_1, OsABCF1_2, OsABCF1_3,OsABCF2,OsABCF3,OsABCF4,OsABCF5, OsABCF5_1, OsABCF5_2, OsABCF5_3,OsABCF6,OsABCG1,OsABCG2,OsABCG7, OsABCG7_1, OsABCG7_2,OsABCG8,OsABCG9,OsABCG10,OsABCG11,OsABCG12,OsABCG14,OsABCC8, OsMRP8a, OsMRP8a, OsMRP8,OsABCG33, OsPDR14,OsABCG46, OsPDR21,OsABCC6, OsMRP6,OsABCB1, ABCB1, OsPGP1, OsMDR4,OsABCB3, ABCB3, OsPGP3, OsMDR5, OsISC34,OsABCB6, ABCB6, OsPGP6, OsMDR8, OsISC31,OsABCB11, ABCB11, OsPGP11, OsMDR11, OsABCB11_1, OsABCB11_2,OsABCB17, ABCB17, OsPGP17, OsMDR3, OsABCB17_1,OsABCB18, OsPGP18, OsABCB18_1, OsABCB18_2
37287	20140455	Yamamoto E., Takashi T., Morinaka Y., Lin S., Wu J., Matsumoto T., Kitano H., Matsuoka M., Ashikari M.	Gain of deleterious function causes an autoimmune response and Bateson-Dobzhansky-Muller incompatibility in rice.	Mol. Genet. Genomics	283(4)	305-15	2010	HBD2,HBD3	OsCKI1, CKI, hbd2, CKI1, LTG1, OsCKI1/LTRPK1, LTRPK1, OsLTRPK1, LSES1, OsLSES1,hbd3
37288	14529272	Cha Young Kim, Yoon Duck Koo, Jing Bo Jin, Byeong Cheol Moon, Chang Ho Kang, Sun Tae Kim, Byung Ouk Park, So Young Lee, Man Lyang Kim, Hwang I., Kyu Young Kang, Jeong Dong Bahk, Sang Yeol Lee, Moo Je Cho	Rice C2-domain proteins are induced and translocated to the plasma membrane in response to a fungal elicitor.	Biochemistry	42(40)	11625-33	2003	RPP17	Rpp17, FIERG1, OsERG1, OsERG1a, OsERG1b, OsC2DP8, C2DP8
37289	17196101	Opassiri R., Pomthong B., Onkoksoong T., Akiyama T., Esen A., James R Ketudat Cairns	Analysis of rice glycosyl hydrolase family 1 and expression of Os4bglu12 beta-glucosidase.	BMC Plant Biol.	6	33	2006	BGLU36,BGLU20,BGLU18,BGLU2,BGLU7,BGLU12,BGLU21,BGLU13,BGLU5,BGLU33,BGLU17,BGLU6,BGLU3,BGLU23,BGLU19,BGLU11,BGLU10,BGLU26,BGLU30,BGLU37,BGLU1,BGLU22,BGLU25,BGLU32,BGLU34,BGLU38,BGLU39,BGLU40,BGLU16,BGLU14,BH1,BGLU24,BGLU8,BGLU28,BGLU27,BGLU29,BGLU9,BGLU35,BGLU31,BGLU15	Os11bglu36, Os11Bglu36, SFR2, sfr2,Os5bglu20, Os5Bglu20,Os4bglu18, Os4Bglu18, Os4BGlu18,Os1bglu2, Os1Bglu2,Os3bglu7, Os3BGlu7, 3BGLU7, BGlu7, BGlu1, bglu1,Os4bglu12, Os4BGlu12, 4BGlu12, OsTAGG2, TAGG2,Os5bglu21, Os5Bglu21,OsTAGG1, TAGG1, Os4BGlu13, 4BGlu13,Os1bglu5, Os1Bglu5, 1bglu5,Os9bglu33, Os9Bglu33, 9bglu33, OsBGLU33,Os4bglu17, Os4Bglu17,Os3bglu6, Os3BGlu6, 3BGlu6,Os1bglu3, Os1Bglu3,Os5bglu23, Os5Bglu23,Os5bglu19, Os5Bglu19,Os4bglu11, Os4BGlu11,Os4bglu10, Os4BGlu10,Os7bglu26, Os7BGlu26,Os9bglu30, OsBGlu30, bglu 2, bglu2, BGlu2,Os11bglu37, OsBGlu37 ,Os1bglu1, Os1Bglu1,Os5bglu22, Os5Bglu22,Os6bglu25, Os6Bglu25,Os9bglu32, Os9Bglu32,Os10bglu34, Os10Bglu34,Os12bglu38, Os12Bglu38,Os12bglu39, Os12Bglu39,Os12bglu40, Os12Bglu40,Os4bglu16, Os4Bglu16, Os4BGlu16,Os4bglu14, Os4Bglu14, Os4BGlu14,BGLU4, Os1bglu4, Os1Bglu4, Os1BGlu4, OsBH1,Os6bglu24, Os6BGlu24, 6BGlu24,Os3bglu8, Os3BGlu8 ,Os8bglu28, OsBGlu28,Os8bglu27, OsBGlu27,Os9bglu29, OsBGlu29, OsBGLU29,Os4bglu9, Os4BGlu9,Os11bglu35, OsBGlu35 ,Os9bglu31, Os9BGlu31 ,Os4bglu15, Os4Bglu15
37290	3286638	K Abe, Y Emori, H Kondo, S Arai, K Suzuki	The NH2-terminal 21 amino acid residues are not essential for the papain-inhibitory activity of Oryzacystatin, a member of the cystatin superfamily. Expression of Oryzacystatin cDNA and its truncated fragments in Escherichia coli.	J. Biol. Chem.	263(16)	7655-9	1988	OC1	Oc1*, Oc1, OC-I, SPOC-I, OsCP1, Oc, OCI, OsCYS1, OsPR6b, PR6b
37291	15073216	Liang-Ran Zhang, Jia-Yi Tao, Wang T.	Molecular characterization of OsRad21-1, a rice homologue of yeast RAD21 essential for mitotic chromosome cohesion.	J. Exp. Bot.	55(399)	1149-52	2004	RAD21-2,RAD21,RAD21-4,RAD21-3	OsRad21-2,OsRad21, OsRAD21-1, REC8,OsRad21-4, REC8, OsREC8, OsRAD21-4,OsRad21-3
37292	21119003	Wang K., Wang M., Tang D., Shen Y., Qin B., Li M., Cheng Z.	PAIR3, an axis-associated protein, is essential for the recruitment of recombination elements onto meiotic chromosomes in rice.	Mol. Biol. Cell	22(1)	12-9	2011	PAIR3,PAIR2,RAD21-4,ZEP1	,Pair2, OsPAIR2, OsASY1,OsRad21-4, REC8, OsREC8, OsRAD21-4,OsZEP1
37293	19001369	Kosugi S., Hasebe M., Matsumura N., Takashima H., Etsuko Miyamoto-Sato, Tomita M., Yanagawa H.	Six classes of nuclear localization signals specific to different binding grooves of importin alpha.	J. Biol. Chem.	284(1)	478-85	2009	IMPA1A	rImpa1a, Impa1a, Osimpa1, Osimpalpha1, OsImpalpha1a, Impalpha1a
37294	18182025	Lee S., Sang Chul Choi, An G.	Rice SVP-group MADS-box proteins, OsMADS22 and OsMADS55, are negative regulators of brassinosteroid responses.	Plant J.	54(1)	93-105	2008	MADS47,MADS22,MADS55	OsMADS47, OsMDP1, MDP, MDP1,OsMADS22, RMD1, DLN68, OsDLN68,OsMADS55, DLN163, OsDLN163
37296	0	Ma,B. and Chen,X.	SPL5, a cell death and defense-related gene, encodes a putative splicing factor 3b subunit 3 (SF3b3) in rice	Mol. Breed.	30(2)	939-949	2012	SPL5	spl5(bl6,spl5-1), bl6, spl5, SF3b3
37297	0	Mukherjee,R., Gayen,S., Chakraborty,A., Bhattacharyya,J., Maiti,M.K., Basu,A. and Sen,S.K.	Double-Stranded RNA-Mediated Downregulation of pdhk Gene Expression to Shorten Maturation Time of a Late Maturing Native indica Rice Cultivar, Badshahbhog	Crop Sci.	52(4)	1743-1753	2012	_,_	Ospdhk1,OS-PYDK, Ospdhk, PDHK, PDK, OsPDK, Ospdhk2, pdhk2 OsHRK1, HRK1
37298	23430049	Sun,J., Xu,X., Xue,Z., Snyder,J.H. and Qi,X.	Functional analysis of a rice oxidosqualene cyclase through total gene synthesis	Mol Plant	6(5)	1726-9	2013	_	OsOSC6
37299	0	Wilkinson,M.D., Castells-Brooke,N. and Shewry,P.R.	Diversity of sequences encoded by the Gsp-1 genes in wheat and other grass species	J. Cereal Sci.	57(1)	1-9	2013	_	Gsp-1, GSP-1
37300	16126864	Liu B., Li P., Li X., Liu C., Cao S., Chu C., Cao X.	Loss of function of OsDCL1 affects microRNA accumulation and causes developmental defects in rice.	Plant Physiol.	139(1)	296-305	2005	MIR529A,_,MIR530,MIR528,DCL1	miR529a, Osa-miR529a, OsmiR529a,miR529b, Osa-miR529b, OsmiR529b,miR530, Osa-miR530, OsmiR530, osa-MIR530, osa-miR530 osa-miR530-3p, osa-miR530-5p,miR528, Osa-miR528, OsmiR528, OsMIR528, osa-MIR528, miR528*, osa-miR528, osa-miR528-5p, MIR528-T1, MIR528-T2,Dcl1, OsDCL1, osDCL1, Os-DCL1, OsDCL1a, DCL1a
37301	17640358	Arora R., Agarwal P., Ray S., Ashok Kumar Singh, Vijay Pal Singh, Akhilesh K Tyagi, Kapoor S.	MADS-box gene family in rice: genome-wide identification, organization and expression profiling during reproductive development and stress.	BMC Genomics	8	242	2007	RAG,MADS59,MADS89,MADS24,MADS22,MADS75,MADS79,MADS27,MADS78,MADS18,MADS80,MADS47,MADS76,MADS74,MADS81,COG1,MADS82,PAP2,MADS83,MADS84,RAP1B,MADS55,MADS37,MADS50,MADS67,MADS85,MADS2,MADS23,MADS60,SPW1,MADS86,MADS57,MADS77,MADS90,MADS91,MADS92,MADS56,MADS93,MADS94,MADS95,MADS61,MADS96,MADS97,MADS98,MADS64,MADS31,MADS70,MADS13,MADS71,MADS73,MADS20,MADS99,MADS51,MADS5,MADS66,MADS33,MADS26,FST ,MADS72,MFO1,MADS63,MADS21,MADS88,MADS4,LHS1,MADS58,MADS7,RAP1A,MADS69,MADS25,MADS87,MADS30,MADS68,MADS62,CFO1	MADS3, OsMADS3, OsMADS3(t), RMADS222, RAG1, rf3,OsMADS59,OsMADS89,OsMADS24, MADS8, OsMADS8, OsMADS8/24 ,OsMADS22, RMD1, DLN68, OsDLN68,OsMADS75,OsMADS79,OsMADS27, MADS-27a, OsSTA66, OsMADS27a,OsMADS78,OsMADS18, MADS2, OsMADS2, MADS28, OsMADS28, FDRMADS7, OsMADS18/28,OsMADS80,OsMADS47, OsMDP1, MDP, MDP1,OsMADS76,OsMADS74,OsMADS81,OsMADS17, MADS17, NMADS3, RMADS213, nmads3,OsMADS82,MADS34, OsMADS34, RMADS212/RMADS217/RMADS221, OsPAP2/MADS34, MADS34/PAP2, PAP2/OsMADS34, OsMADS34/PAP2, OsMADS19,OsMADS83,OsMADS84,MADS14, OsMADS14, FDRMADS6, RMADS211, AGL10,OsMADS55, DLN163, OsDLN163,OsMADS37, DLN217, OsDLN217,OsMADS50, AGL20, SOC1, OsSOC1, RMADS208, OsSOC1/ OsMADS50/DTH3, DTH3, OsDTH3,OsMADS67,OsMADS85,OsMADS2, RMADS219, NMADS1, PI2, nmads1, DLN33, OsDLN33,OsMADS23, MADS-23,OsMADS60, qHd2-1,SPW1, spw1, MADS16, OsMADS16,OsMADS86,OsMADS57, MADS-57,OsMADS77,OsMADS90,OsMADS91,OsMADS92,OsMADS56, FDRMADS8, RMADS214,OsMADS93,OsMADS94,OsMADS95,OsMADS61, MADS-27b,OsMADS96,OsMADS97,OsMADS98,OsMADS64, DLN110, OsDLN110,OsMADS31,OsMADS70,OsMADS13, MAF1, RMADS206,OsMADS71,OsMADS73,OsMADS20,OsMADS99,OsMADS51, OsMADS65, MADS65, qHd1, DLN36, OsDLN36,OsMADS5, FDRMADS2,OsMADS66,OsMADS33,OsMADS26, FDRMADS3, RMADS220,OsMADS29, MADS29, OsFST,OsMADS72,OsMADS6, MADS6, OsMFO1,OsMADS63,OsMADS21, RMADS207,OsMADS88, DLN7, OsDLN7,OsMADS4, PI1, DLN140, OsDLN140,OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO, OsLHS1, OsLG3b, LG3b, qLGY3, LGY3, DLN80, OsDLN80, OLR, OsOLR, GW3p6, OsGW3p6, OsMADS1GW3p6, MADS1GW3p6, qLGY3/OsLG3b/GW3p6,OsMADS58,OsMADS7, OsMADS45, FDRMADS1, RMADS216, AGL6, M79, MADS45, Os MADS7, Os MADS45, OsMADS7/45,OsMADS15, FDRMADS3, RMADS215, MADS15, DEP,OsMADS69,OsMADS25,OsMADS87,OsMADS30,OsMADS68,OsMADS62,OsMADS32, MADS32, OsCFO1, CFO1/OsMADS32, TRI1, OsTRI1 , OsMADS32/CFO, CFO, OsCFO
37302	12645264	Qun-Yu Zhang, Yao-Guang Liu, Gui-Quan Zhang, Man-Tong Mei	[Molecular mapping of the fertility restorer gene Rf-4 for WA cytoplasmic male sterility in rice].	Yi Chuan Xue Bao	29(11)	1001-4	2002	RF3,_	Rf3* (R2, Rf2), Rf2, R2, Rf3, Rf-3,Rf4, Rf-4, PPR782a, PPR9, PPR3
37303	19522564	Chang-Jie Jiang, Shimono M., Maeda S., Inoue H., Mori M., Hasegawa M., Sugano S., Takatsuji H.	Suppression of the rice fatty-acid desaturase gene OsSSI2 enhances resistance to blast and leaf blight diseases in rice.	Mol. Plant Microbe Interact.	22(7)	820-9	2009	WRKY45,SSI2,PR1B	OsWRKY45, OsWRKY45-1, OsWRKY45-2, WRKY45-1, WRKY45-2,OsSSI2,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1, OsPR1a, PR1a
37304	21693643	Paterson A.H., Li Z.K.	Paleo-Green Revolution for rice.	Proc. Natl. Acad. Sci. U.S.A.	108(27)	10931-2	2011	SD1	sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2, OsPHQ1, OsPHq1, PHq1
37305	21443631	Yonekura-Sakakibara K., Hanada K.	An evolutionary view of functional diversity in family 1 glycosyltransferases.	Plant J.	66(1)	182-93	2011		
37306	17443292	Guo J., Song J., Wang F., Xian Sheng Zhang	Genome-wide identification and expression analysis of rice cell cycle genes.	Plant Mol. Biol.	64(4)	349-60	2007	CDC2-1,RB1,CYCT1;1,CYCB1;4,CYCA3;2,CDKC;1,CYCD6;1,CYCU4;3,CYCB1;1,_,CDKD;1,KRP7,CDC2-2,CYCA1;1,CYCB2;2,CYCA3;3,CYCA3;4,CYCB1;3,CYCD5;4,CYCL1;1,CYCT1;2,CYCT1;3,CYCT1;5,CYCT1;6,CDKF;2,CDKF;3,CDKF;4,CDKG;2,_,_,_,_,_,CYCB1;2,_,CYCA1;2,_,E2F4,DEL1,DEL2,CYCD5;2,MSRPK1,CYCD2;3,CDKB;1,CYCD1;2,CYCD3;1,CYCD4;2,CYCD5;3,_,_,KRP3,CDKE;1,CDKC;2,CYCH;1,CYCU4;1,_,_,CYCU4;5,CYCU4;2,CYCU4;4,CYCU3;1,KRP2,CYCU2;1,CYCT1;4,KRP4,CYCD4;1,KRP6,CYCD2;1,CYCA2;1,WEE1,E2F2,SDS,KRP1,DP1,E2F1,CYCA3;1,CYCD2;2,_,CYCD5;1,KRP5,PIS1,CYCD1;1,E2F3,CYCD7;1,CDKB2;1 ,CYCB2;1,CYCD1;3,CYCU1;1,CDKC;3,CDKF;1	cdc2Os-1, CDC2Os-1, CDKA-1, CDKA;1, Orysa;CDKA;1, OsCDKA;1, cdc2Os1, Rcdc2-1, OsCDKA1, CDKA1, CDC20S-1, OsCDC20S-1 ,Orysa;Rb1, OsRBR1, RBR1, OsRBR2, RBR2,CycT1;1, CycT1;os;1, Orysa;CycT1;1, CYCT1,OsCycB1;4, Orysa;CycB1;4, CYCB1-3, OsCYCB1-3,OsCYCA3;2, CycA3;2, CycA3;os;2, Orysa;CycA3;2, CYCA2.1, CYCA2;1,CDKC;1, Orysa;CDKC;1, Orysa;CDKC;2, CDKC;2, OsCDKC;2, OsCDKC2,CycD6;1, CycD6;os;1, Orysa;CycD6;1, Orysa;CYCD6;1, OsCYCD6;1,CycU4;3, CycU4;os;3, Orysa;CycU4;3, OsCYCP4;1, CyclinD4;1,CycB1;1, CycB1;os;1, Orysa;CycB1;1, OsCycB1;1, CyclaZm, CYCIaZm, OsCYCIaZm, OsCYCB1;4,Orysa;CKL7,CDKD;1, Orysa;CDKD;1, R2, OsR2, CAK R2, CDKD1;3 ,Orysa;KRP7,cdc2Os-2, CDC2Os-2, CDKA-2, CDKA;2, Orysa;CDKA;2, Rcdc2-2, OsCDKA;2, OsCDKA2, CDKA2, CDKA;1, OsCDKA;1, CDC20S-2, OsCDC20S-2,CycA1;1, CycA1;os;1, Orysa;CycA1;1, CYCA2.3, OscycA1;1, CYCA1-1, OsCYCA1-1,cycB2;2 (=cycOs2), cycB2;2, cycOs2, CycB2;2, CycOs2, CYCB2-2, CYCOS2, CycB2-Os2, CYCB2, CycB2;os;2, OsCycB2;2, Orysa;CycB2;2, OsCYCOS2, Os;cycB2;2, CYCB2.2, OsCYCB2.2,CycA3;3, CycA3;os;3, Orysa;CycA3;3,CycA3;4, CycA3;os;4, Orysa;CycA3;4,CycB1;3, CycB1;os;3, Orysa;CycB1;3,CycD5;4, CycD5;os;4, Orysa;CycD5;4,CycL1;1, CycL1;os;1, Orysa;CycL1;1,CycT1;2, CycT1;os;2, Orysa;CycT1;2,CycT1;3, CycT1;os;3, Orysa;CycT1;3,CycT1;5, CycT1;os;5, Orysa;CycT1;5,CycT1;6, CycT1;os;6, Orysa;CycT1;6,CDKF;2, Orysa;CDKF;2,CDKF;3, Orysa;CDKF;3,CDKF;4, Orysa;CDKF;4,CDKG;2, Orysa;CDKG;2,Orysa;CKL2,Orysa;CKL5,Orysa;CKL6,Orysa;CKL9,Orysa;CKS1,CycB1;2, CycB1;os;2, Orysa;CycB1;2,Orysa;Wee2,CycA1;1, CycA1;os;1, Orysa;CycA1;2,Orysa;CKL4,Orysa;E2F4, OsE2F4,Orysa;DEL1, OsDEL1, OsE2Fe-1, E2Fe-1,Orysa;DEL2, OsDEL2,CycD5;2, CycD5;os;2, Orysa;CycD5;2, Orysa;CYCD5;2, OsCYCD5;1, CYCD5;1,OsMSRPK1, Orysa;CDKG;1, OsCDKG;1, CDKG;1, CDKG-2, OsCDKG-2,CycD2;3, CycD2;os;3, Orysa;CycD2;3, Orysa;CYCD2;3, OsCYCD2;3,CDKB;1, Orysa;CDKB;1, CDKB1;1, Orysa;CDKB1;1, OsCDKB1.1, CDKB1.1, OsCDKB1;1,CycD1;2, CycD1;os;2, Orysa;CycD1;2, Orysa;CYCD1;2, OsCYCD1;1, CYCD1;1,CycD3;1, CycD3;os;1, Orysa;CycD3;1, Orysa;CYCD3;1, CycD3-1, OsCycD3-1, OsCYCD3;2, CYCD3;2,CycD4;2, CycD4;os;2, Orysa;CycD4;2, Orysa;CYCD4;2, OsCYCD4;2,CycD5;3, CYCD5-3, Orysa;CycD5;3, Orysa;CYCD5;3, OsCYCD5;3,Orysa;CKL8, OsSTA277,Orysa;CKL1, OsSTA287,OsiICK3, Orysa;KRP3, OrysaICK3, Orysa;ICK3,CDKE;1, Orysa;CDKE;1, OsCdk8_1, Cdk8_1 ,CDKC;2, Orysa;CDKC;2, Orysa;CDKC;1, CDKC;1, OsCDKC1, OsCDKC;1,Os;cycH;1, Orasa;CycH1;1, cycH1, CYCH1 ,CycU4;1, CycU4;os;1, Orysa;CycU4;1,Orysa;DP3,Orysa;DP2, DP TF,CycU4;5, CycU4;os;5, Orysa;CycU4;5,CycU4;2, CycU4;os;2, Orysa;CycU4;2,CycU4;4, CycU4;os;4, Orysa;CycU4;4, OsCYCP4;2,CycU3;1, CycU3;os;1, Orysa;CycU3;1, OsCYCP1;1,OsKRP2, OsiICK2, Orysa;KRP2, OrysaICK2, Orysa;ICK2,CycU2;1, CycU2;os;1, Orysa;CycU2;1, OsCYCP3;1, CYC U2,CycT1;4, CycT1;os;4, Orysa;CycT1;4,OsiICK6, Orysa;KRP4, OrysaICK6, Orysa;ICK6, OsKRP4, OsICK6, ICK6,CycD2;1, CYCD2-1, Orysa;CycD2;1, OsCYCD2;1, Orysa;CycD4;1, CycD4;1, CYCD4-1, Orysa;CYCD4;1, cycD, OsCYCD4;1,,OsiICK4, Orysa;KRP6, OrysaICK4, Orysa;ICK4, OsKRP6, OsKRP5,CycD2;1, CYCD2-1, OsCYCD2-1, Orysa;CycD2;1, Orysa;CYCD2;1, Orysa;CycD2;2, OsCYCD2;2, CYCD2;2,CycA2;1, CycA2;os;1, Orysa;CycA2;1, OsCYCA2;1, CYCA2.2,Ores;Wee1, OsWEE1,Orysa;E2F2, OsE2F2, DLN252, OsDLN252, OsE2Fa-2, E2Fa-2,OsSDS, Orysa;SDS,OsiICK1, Orysa;KRP1, OrysaICK1, Orysa;ICK1, CDKI, OsICK1, ICK1, OsKRP1,Orysa;DP1, OsDP,Orysa;E2F1, OsE2F1, DLN58, OsDLN58, OsE2Fa-1, E2Fa-1,CycA3;1, CycA3;os;1, Orysa;CycA3;1, CYCA2.2,CycD2;2, CycD2;os;2, Orysa;CycD2;2, Orysa;CYCD2;2, CyclinD3;1, OsCYCD2;1, OsCYCD3;1, CYCD3;1,CKL10, Orysa;CKL10, OsCKL:10, CKL:10,CycD5;1, CycD5;os;1, Orysa;CycD5;1, Orysa;CYCD5;1, OsCYCD5;2, CycD5;2,OsiICK5, Orysa;KRP5, OrysaICK5, Orysa;ICK5, OsKRP5, OsICK5, ICK5 ,Orysa;Rb2, RBR2, OsRBR1, RBR1, OsPIS1, RB2, OsRB2, RB1, OsRB1,CycD1;1, CycD1;os;1, Orysa;CycD1;1, Orysa;CYCD1;1, OsCYCD2;1, CYCD2;1,Orysa;E2F3, OsE2F3, DLN111, OsDLN111,CycD7;1, CycD7;os;1, Orysa;CycD7;1, OsCYCD3, CYCD3, OsCYCD7;1,Orysa;CDKB2;1, OsCDKB2;1, cdc2Os3, Oscdc20s-3, cdc20s-3, Orysa;CDKB;2, CYCB2.1, CDKB-2, OsCDKB-2,cycB2;1 (=cycOs1), cycB2;1, cycOs1, CycB2;1, CycOs1, CYCB2-1, CYCOS1, CycB2-Os1, CYCB2, CycB2;os;1, Orysa;CycB2;1, CycB2;os;1, OsCycB2;1,CycD1;3, CycD1;os;3, Orysa;CycD1;3, Orysa;CYCD1;3, OsCYCD1;2, CYCD1;2,CycU1;1, CycU1;os;1, Orysa;CycU1;1, OsCYCP2;1, CYCP2;1,CDKC;3, Orysa;CDKC;3,CDKF;1, Orysa;CDKF;1, CDKF1, CDKF-1/CAK1AT, CDKF-1, CAK1AT, CAK1A
37307	18538315	Abe M., Kuroshita H., Umeda M., Jun-Ichi Itoh, Nagato Y.	The rice flattened shoot meristem, encoding CAF-1 p150 subunit, is required for meristem maintenance by regulating the cell-cycle period.	Dev. Biol.	319(2)	384-93	2008	_,OSH1	FSM, FAS1,OSKN1, Oskn1, OsKN1, OSH1/Oskn1, HB75
37308	19546891	Liu S., Wang J., Wang L., Wang X., Xue Y., WU P., Shou H.	Adventitious root formation in rice requires OsGNOM1 and is mediated by the OsPINs family.	Cell Res.	19(9)	1110-9	2009	PIN9,LRA1,PIN5B,CRL4	OsPIN9,OsPIN2, PIN2, OsLRA1, WAR1, OsWAR1,PIN5C, OsPIN5c, OsPIN5b, PIN4,OsGNOM1, GNOM1, CRL4/GNOM1, CRL2/CRL3
37309	15258171	Emily J H Ross, Julie M Stone, Christian G Elowsky, Raul Arredondo-Peter, Robert V Klucas, Sarath G.	Activation of the Oryza sativa non-symbiotic haemoglobin-2 promoter by the cytokinin-regulated transcription factor, ARR1.	J. Exp. Bot.	55(403)	1721-31	2004	Hb4,Hb3,Hb1,Hb2	OsHB4, HB4, OsNSHB4, NSHB4, OsPgb1.4, Pgb1.4,HB3, OsNSHB3, NSHB3, OsPgb1.3, Pgb1.3,HB1, OsHB1, GLB1A, rHb1, ORYsa GLB1a, nsHb1, OsNSHB1, hb1, nsHb, OsPgb1.1, Pgb1.1,HB2, OsHB2, OsNSHB2, hb2, GLB1b, ORYsa GLB1b, OsPgb1.2, Pgb1.2
37310	0	LI L., PENG W.F., LIU Q.Q., ZHOU J.J., LIANG W.H., XIE X.Z.	Expression Patterns of OsPIL11, a Phytochrome-Interacting Factor in Rice, and Preliminary Analysis of Its Roles in Light Signal Transduction	Rice Science	19	263-268	2012	PIL11	OsPIL11, OsbHLH102, bHLH102, PIF4, OsPIF4
37311	22924020	Farre A., Cuadrado A., Lacasa-Benito I., Cistue L., Schubert I., Comadran J., Jansen J., Romagosa I.	Genetic characterization of a reciprocal translocation present in a widely grown barley variety	Molecular Breeding	30	1109-1119	2012		
37312	0	Cook M., Thilmony R.	The OsGEX2 Gene Promoter Confers Sperm Cell Expression in Transgenic Rice	Plant Molecular Biology Reporter	30	1138-1148	2012	_,_	PS1,OsGEX2, GEX2
37313	0	Na J.K., Seo M.H., Yoon I.S., Lee Y.H., Lee K.O., Kim D.Y.	Involvement of rice Polycomb protein OsFIE2 in plant growth and seed size	Plant Biotechnol Rep	6	339-346	2012	IEZ1,FIE2	OsiEZ1, OsSET1, SET1, iEZ1, OsEZ1/OsiEZ1, OsEZ1, EZ1, ez1, OsSET15, SDG718, DLN84, OsDLN84,OsFIE2, FIE, OsWD40-153,  OsDWD46, DWD46
37314	0	Dong R.X., Chen J., Wang X.M., Li J.S., Zhou J., Yang Y., Yu C.L., Cheng Y., Yan C.Q., Chen J.P.	Agrobacterium-mediated transformation efficiency is altered in a novel rice bacterial blight resistance cultivar and is influenced by environmental temperature	Physiol. Mol. Plant Pathol.	77	33-40	2012	PR1A,PR1-12,PR1-51,PR1B,PR1-21,PR1-121,_,_,PR1-101,PR1-73,PR1-71,PR1-22,PR1-72,PR1-52	OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1, OsPR1b, PR1alpha, OsPR1alpha,OsPR1#012, PR1#012, OsPR1-12, OsPR1.1, PR1.1,OsPR1#051, OsPR1-51,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1, OsPR1a, PR1a,OsPR1#021, OsPR1-21,OsPR1#121, OsPR1-121,OsVIP1-1,OsVIP1-2,OsPR1#101, OsPR1-101, OsPR1L2, PR1L2, OsPRB1, PRB1,OsPR1#073, OsPR1-73,OsPR1#071, OsPR1-71,OsPR1#022, OsPR1-22,OsPR1#072, OsPR1-72, PR1L, OsPR1L, OsPRB1, PRB1,OsPR1#052, OsPR1-52
37315	0	Jiang Y., Chen R., Dong J., Xu Z., Gao X.	Analysis of GDSL lipase (GLIP) family genes in rice (Oryza sativa)	Plant OMICS	5	351-358	2012	GELP57,GELP38,GELP4,GELP67,GELP24,GELP3,GELP63,GELP2,GELP5,GELP6,GELP7,GELP8,GELP14,GELP15,GELP16,GELP13,GELP18,GELP19,GELP22,GELP25,GELP26,GELP27,GELP29,GELP30,GELP31,GELP32,GELP33,GELP35,GELP36,GELP37,GELP40,GELP39,GELP41,GELP42,GELP43,GELP44,GELP46,GELP47,GELP50,GELP51,GELP52,GELP53,GELP54,GELP55,GELP56,GELP58,GELP60,GELP65,GELP61,GELP66,GELP68,GELP69,GELP70,GELP71,GELP72,GELP73,GELP74,GELP75,GELP76,GELP79,GELP80,GELP82,GELP83,GELP84,GELP85,GELP86,GELP87,GELP88,GELP89,GELP90,GELP91,GELP93,GELP94,GELP95,GELP96,GELP97,GELP98,GELP99,GELP100,GELP101,GELP102,GELP105,GELP106,GELP108,GELP109,GELP107,GELP111,GELP113,GELP114,GELP1,GELP49,GELP64,GELP77,GELP12,GELP103,GELP48,GELP92,GELP62,GELP81,GELP104,RMS2,GELP110,GELP59,GELP78,GELP112,GELP23,GELP21,GELP20,GELP17,GELP9,GELP10,GELP11	OsGELP57,OsGELP38,OsGELP4,OsGELP67, OsGELP67a, OsGELP67b,OsGELP24,OsGELP3, OsGELP3a, OsGELP3b,OsGELP63,OsGELP2, OsGELP2a, OsGELP2b,OsGELP5, OsGELP5a, OsGELP5b,OsGELP6,OsGELP7,OsGELP8,OsGELP14,OsGELP15, OsGELP15a, OsGELP15b, OsGELP15c,OsGELP16, OsGELP16a, OsGELP16b,OsGELP13,OsGELP18, OsGELP18a, OsGELP18b,OsGELP19,OsGELP22,OsGELP25,OsGELP26,OsGELP27,OsGELP29,OsGELP30,OsGELP31,OsGELP32,OsGELP33, OsGELP33a, OsGELP33b, OsGELP33c,OsGELP35,OsGELP36,OsGELP37,OsGELP40,OsGELP39,OsGELP41,OsGELP42,OsGELP43,OsGELP44, OsGELP44a, OsGELP44b,OsGELP46, OsGELP46a, OsGELP46b,OsGELP47,OsGELP50, OsGELP50a, OsGELP50b,OsGELP51,OsGELP52,OsGELP53,OsGELP54,OsGELP55, OsGELP55a, OsGELP55b,OsGELP56,OsGELP58, OsGELP58a, OsGELP58b, OsGELP58c, OsGELP58d,OsGELP60,OsGELP65,OsGELP61,OsGELP66,OsGELP68,OsGELP69,OsGELP70,OsGELP71,OsGELP72,OsGELP73,OsGELP74,OsGELP75, OsGELP75a, OsGELP75b, OsGELP75c,OsGELP76,OsGELP79,OsGELP80,OsGELP82,OsGELP83, OsGELP83a, OsGELP83b,OsGELP84,OsGELP85,OsGELP86,OsGELP87,OsGELP88,OsGELP89,OsGELP90,OsGELP91,OsGELP93,OsGELP94, OsGELP94a, OsGELP94b,OsGELP95,OsGELP96, OsGELP96a, OsGELP96b,OsGELP97, OsGELP97a, OsGELP97b,OsGELP98, OsGELP98a, OsGELP98b,OsGELP99,OsGELP100, OsGELP100a, OsGELP100b,OsGELP101,OsGELP102,OsGELP105,OsGELP106,OsGELP108,OsGELP109,OsGELP107,OsGELP111,OsGELP113,OsGELP114, OsGELP114a, OsGELP114b,OsGELP1, OsEST1,OsGELP49, HTA1, OsHTA1,OsGELP64, OsGELP64a, OsGELP64b, MHZ11, OsMHZ11,OsGELP77, OsGELP77a, OsGELP77b,OsGELP12, OsGELP12a, OsGELP12b, OsGELP12c,OsGELP103,OsGELP48,OsGELP92, OsGELP92a, OsGELP92b, OsGELP92c, AChE,OsGELP62, OsGELP62a, OsGELP62b, OsGELP62c, DARX1, OsDARX1,OsGELP81,OsGELP104,OsGELP34, GELP34, OsRMS2,OsGELP110,OsGELP59, RMP7,OsGELP78, OsEnS-82, EnS-82, OsGLIP2, GLIP2,OsGELP112, WDL1,OsGELP23,OsGELP21, OsGELP21a, OsGELP21b, OsGELP21c,OsGELP20, OsGELP20a, OsGELP20b, OsGELP20c,OsGELP17,OsGELP9,OsGELP10,OsGELP11
37316	0	Zhang H., Wu K., Wang Y., Peng Y., Hu F., Wen L., Han B., Qian Q., Teng S.	A WUSCHEL-like homeobox gene, OsWOX3B responses to NUDA/GL-1 locus in rice	Rice (N Y)	5	30	2012	GL1	gl1, NUDA/GL-1, NUDA/GL1, NUDA, GL-1, OsWOX3B, OsWOX2, OsWOX3, Os WOX3, WOX3B, WOX2, WOX3, LSY1, OsLSY1, DEP, OsDEP
37317	0	Liu T., Zeng J., Xia K., Fan T., Li Y., Wang Y., Xu X., Zhang M.	Evolutionary expansion and functional diversification of oligopeptide transporter gene family in rice	Rice (N Y)	5	12	2012	YSL15,_,_,_,_,_,YSL10,_,_,YSL12,YSL13,OPT7,YSL9,YSL16,YSL2	OsYSL15, OsYs7,OsOPT8,OsOPT6,OsOPT2,OsOPT4,OsOPT5,OsYSL10,OsOPT9,OsOPT3, OsGT1,OsYSL12, OsYs11 ,OsYSL13, OsYs12 ,OPT, OsOPT7,OsYSL9, OsYs13 ,OsYSL16, Os-YSL16, OsYs14 ,OsYSL2, Os-YSL2, OsYs6 
37318	24280008	Wamaitha M.J., Yamamoto R., Wong H.L., Kawasaki T., Kawano Y., Shimamoto K.	OsRap2.6 transcription factor contributes to rice innate immunity through its interaction with receptor for activated Kinase-C 1 (RACK1)	Rice (N Y)	5	35	2012	PR10A,PAL1,DSG1,RAC1,ERF101,RACK1,MSRMK2	PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6,OsMAPK6, MAPK6, OsMPK6, OsSIPK, SIPK, OsMAPK1, MAPK1, MPK1, OsMPK1, MPK6, OsDSG1,OsRAC1, OsRac1, Os Rac1, Rac1, Os-Rac1,OsERF#101, OsERF101, OsDERF6, DERF6, AP2/EREBP#089, AP2/EREBP89, OsRap2.6, Rap2.6, ERF113, OsERF113, OsERF101/OsRAP2.6,RACK1A, RWD, OsWD40-21, OsRACK1, OsRACK1A,OsMSRMK2, OsMAPK5, OsMAP1, OsMPK3, OsBIMK1, OsMAPK2, MPK5, BIMK1, MAPK2, MAPK5, MPK3, OsMPK5, OsMAPK3, OsMAPK5b, MAPK3
37319	0	Zhang Y., Yang J., Shan Z., Chen S., Qiao W., Zhu X., Xie Q., Zhu H., Zhang Z., Zeng R., Ding X., Zhang G.	Substitution mapping of QTLs for blast resistance with SSSLs in rice (Oryza sativa L.)	Euphytica	184	141-150	2012		
37320	0	Ghaley B.B., Christiansen J.L., Andersen S.B.	Genetic diversity in blast resistance of Bhutan rice landraces	Euphytica	184	119-130	2012		
37321	22950899	Lu F.H., Park Y.J.	Sequence variations in OsAGPase significantly associated with amylose content and viscosity properties in rice (Oryza sativa L.)	Genet Res (Camb)	94	179-189	2012	AGPS2,AGPS1,WX1,AGPL2,ALK,PUL,AGPL3,_,AGPL1,AGPL4	OsAGPS2a, AGPS2A, AGPS2B, OsAGPS2, osagps2, APS2, APS2a, APS2b, AGPS2a, APGS2b, OsAGPS2b, AGPP, GAS8, OsAPS2, OsAPS2a, OsAPS2b,OsAGPS1, APS1, OsAPS1, AGPsma,wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx,OsAGPL2, osagpl2, APL2, OsAPL2, AGPiso, sh2, Sh2, GIF2, GAS1 ,alk, SSII-3, OsSSIIa, OsSSII-3, SSIIa, SSS2A, OsSSIIaChr6, SS2a,OsPUL, SDBE, OsPUL3, RE,OsAGPL3, APL3, OsAPL3, AGPlar, OsAGPL1, AGPL1,OsSSIIaChr7,OsAGPL1, OsAPL1, APL1, OsAGPL3, AGPL3, OsAGPSL3, AGPSL3,OsAGPL4, APL4, OsAPL4, OsSTA193
37322	0	Yang L., Li R.B., Li Y.R., Huang F.K., Chen Y.Z., Huang S.S., Huang L.F., Liu C., Ma Z.F., Huang D.H., Jiang J.J.	Genetic mapping of bph20(t) and bph21(t) loci conferring brown planthopper resistance to Nilaparvata lugens Stal in rice (Oryza sativa L.)	Euphytica	183	161-171	2012	_,_	Bph20(t), BPH20,Bph21(t), BPH21
37323	0	Sama V.S.A.K., Himabindu K., Naik S.B., Sundaram R.M., Viraktamath B.C., Bentur J.S.	Mapping and marker-assisted breeding of a gene allelic to the major Asian rice gall midge resistance gene Gm8	Euphytica	187	393-400	2012	XA21,GM8,GM1,GM3,GM4,GM5,GM6,GM7,GM9,GM10,GM11,GM2	Xa21*, Xa21, OsXA21,Gm8(t), Gm8,Gm1, Gm-1, GM-1,gm3*, gm3,Gm4(t)*, Gm4(t), Gm4, Gm4t,Gm5*, Gm5,Gm6(t), Gm6,Gm7*, Gm7,Gm9, Gm9(t),Gm10, Gm10(t),Gm11t, Gm11(t), Gm11,Gm2, Gm-2, GM-2
37324	0	Li R.J., Lu W.J., Guo C.J., Li X.J., Gu J.T., Xiao K.	Molecular Characterization and Functional Analysis of OsPHY1, a Purple Acid Phosphatase (PAP)-Type Phytase Gene in Rice(Oryza sativaL.)	Journal of Integrative Agriculture	11	1217-1226	2012	PAP15	OsPAP15, OsPAPhy_b, PAPhy_b, OsPHY1
37325	0	Gao Y., Yang S., Yuan L., Cui Y., Wu K.	Comparative analysis of SWIRM domain-containing proteins in plants	Comp. Funct. Genomics	2012	-	2012	_,_,_,_,_,CHB703,SWI3C,_,_,_,_	OsCHB704, CHB704,OsCHB706, CHB706,OsHXA701, HXA701, ADA2 ,OsCHB702, CHB702, DLN49, OsDLN49,OsCHB701, CHB701,OsCHB703, OsSWI3A, SWI3A,OsSWI3C, OsCHB705, CHB705, OsSWI3C1, SWI3C1,OsHDMA702, HDMA702, OsPAO8, PAO8,OsHDMA701, HDMA701, OsPAO9, PAO9,OsHDMA703, HDMA703, OsPAO10, PAO10,OsHDMA704, HDMA704, OsPAO11, PAO11
37326	0	Kato T., Horibata A.	A novel frameshift mutant allele, FZP-10, affecting the panicle architecture of rice	Euphytica	184	65-72	2012	FZP	fzp*, fzp, OsBD1, BD1, OsERF#078, OsERF078, OsERF78, ERF78, AP2/EREBP#133, AP2/EREBP133, BFL1, SGDP7, OsSGDP7
37327	23412633	Wang Y.P., Bounphanousay C., Kanyavong K., Nakamura I., Sato Y.I., Sato T., Zhang H.S., Tang L.H., Ishikawa R.	Population structural analysis of an in-situ conservation site for wild rice in Laos	Genes and Genetic Systems	87(5)	311-322	2012		
37328	0	Liang Y., Zhan X., Gao Z., Lin Z., Yang Z., Zhang Y., Shen X., Cao L., Cheng S.	Mapping of QTLs associated with important agronomic traits using three populations derived from a super hybrid rice Xieyou9308	Euphytica	184	1-13	2012		
37329	0	Ujiie K., Kashiwagi T., Ishimaru K.	Identification and functional analysis of alleles for productivity in two sets of chromosome segment substitution lines of rice	Euphytica	187	325-337	2012		
37331	22417073	Zhu X., Chen C., Wang B.	Phylogenetics and evolution of Trx SET genes in fully sequenced land plants	Genome	55	269-280	2012		
37332	0	Huang B., Xu J.Y., Hou M.S., Ali J., Mou T.M.	Introgression of bacterial blight resistance genes Xa7, Xa21, Xa22 and Xa23 into hybrid rice restorer lines by molecular marker-assisted selection	Euphytica	187	449-459	2012	XA23,XA22,XA7,XA21	Xa23(t)*, Xa23(t), Xa23, Xa23-Ni ,Xa22, Xa22*, RXa20, Xa(t), Xa22(t),Xa7,Xa21*, Xa21, OsXA21
37333	0	Lu F.H., Park Y.J.	An SNP downstream of the OsBEIIb gene is significantly associated with amylose content and viscosity properties in rice (Oryza sativa L.)	J. Cereal Sci.	56	706-712	2012	WX1,PHS8,SBE1,ISA3,SBE3,SSIIB,SBE4,FLO5	wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx,ISA1, OsISA1, ISA, OsISA, PHS8/ISA1, OsPHS8, ISA I, OsISA I, ISAI, OsISAI,sbe1, Rbe1. Sbe1, sbe1*(QEI), RBE1, BEI, SBE I, QEI, OsBEI, BE1, OsSBE1, OsSBEI, SBEI,OsISA3,SBEIII*, SBEIII, Sbe3, RBE3, QEIIa, QEIIA, BEIIb, BEIIB, SBEIIb, OsBEIIb, sbe3, SBE III, OsSBEIIb, SBEIIb,OsSSIIb, OsSSII-2, SSII-2, SS2, OsSSSIIb, SS2b,RBE4, OsSBE4, BEIIa, QEIIb, BEIIA, OsBEIIa,OsSSIIIa, SSIII-2, OsSSIII-2, OsSS3A, SS3A, SS3a, OsSSSIIIa, SSIIIa, Flo5
37334	0	dos Reis Goulart I.C.G., Pacheco M.T., Nunes A.L., Merotto Jr.	Identification of origin and analysis of population structure of field-selected imidazolinone-herbicide resistant red rice (Oryza sativa)	Euphytica	187	437-447	2012	ALS	OsALS, AHAS, OsALS1, ALS1
37335	0	Shen B., Yu W.D., Zhu Y.J., Fan Y.Y., Zhuang J.Y.	Fine mapping of a major quantitative trait locus, qFLL6.2, controlling flag leaf length and yield traits in rice (Oryza sativa L.)	Euphytica	184	57-64	2012		
37336	0	Suh J.P., Lee C.K., Lee J.H., Kim J.J., Kim S.M., Cho Y.C., Park S.H., Shin J.C., Kim Y.G., Jena K.K.	Identification of quantitative trait loci for seedling cold tolerance using RILs derived from a cross between japonica and tropical japonica rice cultivars	Euphytica	184	101-108	2012		
37337	0	Hamada S., Hasegawa Y., Suzuki Y.	Identification of a GDSL-motif carboxylester hydrolase from rice bran (Oryza sativa L.)	J. Cereal Sci.	55	100-105	2012	GELP1	OsGELP1, OsEST1
37338	0	Willocquet L., Noel M., Sackville Hamilton R., Savary S.	Susceptibility of rice to sheath blight: An assessment of the diversity of rice germplasm according to genetic groups and morphological traits	Euphytica	183	227-241	2012		
37339	0	Yang S.H., Niu X.L., Luo D., Chen C.D., Yu X., Tang W., Lu B.R., Liu Y.S.	Functional Characterization of an aldehyde dehydrogenase Homologue in Rice	Journal of Integrative Agriculture	11	1434-1444	2012	ALDH22A1	OsALDH22, ALDH22, OsALDH22A1, 
37340	0	Balaji Suresh P., Srikanth B., Hemanth Kishore V., Subhakara Rao I., Vemireddy L.R., Dharika N., Sundaram R.M., Ramesha M.S., Sambasiva Rao K.R.S., Viraktamath B.C., Neeraja C.N.	Fine mapping of Rf3 and Rf4 fertility restorer loci of WA-CMS of rice (Oryza sativa L.) and validation of the developed marker system for identification of restorer lines	Euphytica	187	421-435	2012	_,_,_,_,RF3,_	PPR683, PPR5, PPR5-683,SF21,,PPR762,Rf3* (R2, Rf2), Rf2, R2, Rf3, Rf-3,Rf4, Rf-4, PPR782a, PPR9, PPR3
37341	0	Chen M., Zhao Z., Jiang L., Wan J.	A new gene controlling hybrid sterility in rice (Oryza sativa L.)	Euphytica	184	15-22	2012	S35	S35(t)
37342	0	Yang L., Li R.B., Li Y.R., Huang F.K., Chen Y.Z., Huang S.S., Huang L.F., Liu C., Ma Z.F., Huang D.H., Jiang J.J.	Genetic mapping of bph20(t) and bph21(t) loci conferring brown planthopper resistance to Nilaparvata lugens St?l in rice (Oryza sativa L.)	Euphytica	183	161-171	2012		
37343	0	Ding W.N., Huang W., Ning Y.Q., Zhu S.H.	Genetic Analysis and Mapping of a Novel Short Root Hair Gene OsSRH3 in Rice	Acta Agronomica Sinica	38	240-244	2012	_	OsSRH3
37344	0	Li S.M., Li B.Z., Shi W.M.	Expression Patterns of Nine Ammonium Transporters in Rice in Response to N Status	Pedosphere	22	860-869	2012	AMT3;1,AMT1;1,AMT1;3,AMT3;2,AMT2;2,AMT2;1,AMT2;3,AMT3;3,AMT1;2	OsAMT3;1, AMT3-1, OsAMT3.1, OsAMT2;2,OsAMT1;1, OsAMT1:1, OsAMT1, AMT1-1, AMT1, OsAMT1p, OsAMT1-1, Osamt1-1, "OsAMT1,1", OsAMT1.1, AMT1.1, FCO12,OsAMT1;3, AMT1-3, Osamt1-2, "OsAMT1,2", OsAMT1;2, OsAMT1.3, AMT1.2,AMT3;2, OsAMT3;2, OsAMT3.2,OsAMT2;2, AMT2;2, OsAMT2.2,OsAMT2;1, AMT2-1, OsAMT2.1, AMT2.1,OsAMT2;3, AMT2;3, OsAMT2.3,OsAMT3;3, AMT3;3, OsAMT3.3,OsAMT1;2, AMT1-2, Osamt1-3, "OsAMT1,3", OsAMT1;3, OsAMT1.3, OsAMT1.2, AMT1.2
37345	0	Yang X.G., Liang W.H., Li F., Ma W.S.	OsGSK3 is a novel GSK3/shaggy-like gene from oryza sativa L., involved in abiotic stress signaling	Pak J Bot	44	1491-1496	2012	_	OsGSK3
37346	0	Zhang Q., Li Z., Yang J., Li S., Yang D., Zhu Y.	A Calmodulin-binding protein from Rice is Essential to pollen Development	Journal of Plant Biology	55	8-14	2012	_	OsPCBP
37347	0	Eslampanah H., Shahpiri A.	Molecular cloning and characterization of two isoforms of cytoplasmic/mitochondrial type NADPH-dependent thioredoxin reductase from rice (Oryza sativa L. ssp. indica)	Aust J Crop Sci	6	1045-1050	2012	NTRC,NTRA,NTRB	OsNTRC, NtrC, OsGRL15,OsNTRA, NtrA,OsNTRB, NtrB
37348	21959909	Shahinnia F., Druka A., Franckowiak J., Morgante M., Waugh R., Stein N.	High resolution mapping of dense spike-ar (dsp.ar) to the genetic centromere of barley chromosome 7H	Theoretical and Applied Genetics	124	373-384	2012	DEP1,DEP3,WFP	OsDEP1, EP, qPE9-1, DN1, DEP1/DN1/qPE9-1, qNGR9, qDEP1, RGG4/DEP1/DN1/qPE9-1/OsGGC3, RGG4, OsDN1, OsGGC3, GGC3,dep3, OspPLAIIIdelta, pPLAIIIdelta,OsSPL14, SPL14, IPA1, WFP/IPA1, OsSPL14/WFP/IPA1, OsIPA1,  IPA1/OsSPL14
37349	22083356	Septiningsih E.M., Sanchez D.L., Singh N., Sendon P.M.D., Pamplona A.M., Heuer S., Mackill D.J.	Identifying novel QTLs for submergence tolerance in rice cultivars IR72 and Madabaru	Theoretical and Applied Genetics	124	867-874	2012	SUB1A	Sub1A, Sub1A-1, Sub1A-2, OsSUB1A
37350	24279948	Huang Y.C., Huang W.L., Hong C.Y., Lur H.S., Chang M.C.	Comprehensive analysis of differentially expressed rice actin depolymerizing factor gene family and heterologous overexpression of OsADF3 confers Arabidopsis Thaliana drought tolerance	Rice (N Y)	5	33	2012	ADF1,ADF3,ADF2,ADF5,ADF7,ADF8,ADF9,ADF10,ADF11,ADF6,ADF4	OsADF1,OsADF3,OsADF,OsADF5,OsADF7,OsADF8, OsADF8a, OsADF8b,OsADF9,OsADF10,OsADF11,OsADF6,OsADF4, OsADF
37351	21938473	Venuprasad R., Bool M.E., Quiatchon L., Atlin G.N.	A QTL for rice grain yield in aerobic environments with large effects in three genetic backgrounds	Theoretical and Applied Genetics	124	323-332	2012		
37352	0	Andrieu A., Breitler J.C., Sire C., Meynard D., Gantet P., Guiderdoni E.	An in planta, Agrobacterium-mediated transient gene expression method for inducing gene silencing in rice (Oryza sativa L.) leaves	Rice (N Y)	5	23	2012	SLR1,PDA	slr1-1, slr1, slr, GAI, OsGAI, OsSLR1, Os SLR1, OsRGA1, OsGRAS-18, OsGRAS-18, GRAS-18, GRAS18, SLR-1,PDS1, PDS, OsPDS, Pds, OsPDA
37353	0	Gomaa A.M., Raldugina G.N., Burmistrova N.A., Radionov N.V., Kuznetsov V.V.	Response of transgenic rape plants bearing the Osmyb4 gene from rice encoding a trans-factor to low above-zero temperature	Russian Journal of Plant Physiology	59	105-114	2012	_	OsMYB4, Osmyb4, OsMyb4, MYB4, OsMYB55, MYB55, OsMyb8, MYB8, OsMYB13b, MYB13b, OsMYB15, MYB15, Os2R_MYB46, 2R_MYB46
37354	0	Choi M.S., Koh E.B., Woo M.O., Piao R., Oh C.S., Koh H.J.	Tiller formation in rice is altered by overexpression of OsIAGLU gene encoding an IAA-conjugating enzyme or exogenous treatment of free IAA	Journal of Plant Biology	55	429-435	2012	IAGLU	OsIAGLU, OsIAAGLU, IAAGLU, OsIAGT1, IAGT1, UGT74A2, OsUGT74A2
37355	0	Su'udi M., Cha J.Y., Ahn I.P., Kwak Y.S., Woo Y.M., Son D.	Functional characterization of a B-type cell cycle switch 52 in rice (OsCCS52B)	Plant Cell Tissue Organ Cult.	111	101-111	2012	CCS52B	OsWD40-33, WD40-33, OsCCS52B,  OsCCS52B, CCS52B, OsCDH1B, CDH1B
37356	0	Pandey D.M., Kim S.R.	Identification and expression analysis of hypoxia stress inducible CCCH-type zinc finger protein genes in rice	Journal of Plant Biology	55	489-497	2012	ARM1,C3H37,TPP1,C3H67,C3H47,_,_,_,C3H29,C3H35,_,_,C3H24,C3H10,PPI-PFK,_,C3H33,DIAT,CYP94C2B,C3H50,DOS,PL,MADS23,PRR95,HAC1;2	OsMYB-1, MYB-1, MYB1, OsARM1, Os2R_MYB56, 2R_MYB56, OsMYBxoc1, MYBxoc1,OsC3H37, OsTZF7, OsCCCH-Zn-1,OsTPP1, OsTPS, TPP,OsC3H67, OsTZF4, OsCCCH-Zn-7,OsC3H47, OsCCCH-Zn-10,OsLASPO,OsGH,OsRNAG,OsC3H29, OsCCCH-Zn-9,OsC3H35, OsTZF1, OsCCCH-Zn-3,OsLRR,OsPRAGL,OsC3H24, OsTZF3, TZF3, OsCCCH-Zn-8, CCCH-Zn-8,OsC3H10, OsTZF8, OsCCCH-Zn-2, OsEnS-12,OsPPi-PFK, OsPFK04, PFK04, PFK4,OsNPK1-PK, NPK1-PK, OsMKKK62, MKKK62, OsMAPKKK62, MAPKKK62, MEK7, OsMEK7,OsC3H33, OsTZF5, TZF5, OsCCCH-Zn-5, CCCH-Zn-5,OsAT-IV, OsDIAT,OsCYP94C2b,OsC3H50, OsTZF6, OsCCCH-Zn-6, DLN188, OsDLN188,OsDOS, OsC3H2, C3H2, OsTZF2, OsCCCH-Zn-4,OsMYB55, OsMYB-2, MYB55, MYB-2, OsPL, Os2R_MYB60, 2R_MYB60,OsMADS23, MADS-23,OsPRR95, Os-PRR95, Prr2, OsPRR2, OsCCT33,OsStr6, STR6, OsRhST, RLD, OsHAC1;2
37357	0	Kim S.H., Choi H.S., Cho Y.C., Kim S.R.	Cold-Responsive Regulation of a Flower-Preferential class III peroxidase Gene, OsPOX1, in Rice (Oryza sativa L.)	Journal of Plant Biology	55	123-131	2012	ATP6	atp6, OsPOX1, prx3, POX1
37358	15111724	Miki D., Shimamoto K.	Simple RNAi vectors for stable and transient suppression of gene function in rice.	Plant Cell Physiol.	45(4)	490-5	2004	RAC1,RAC2,RAC4,RAC3,RAC6,RAC7,PDA,RAC5	OsRAC1, OsRac1, Os Rac1, Rac1, Os-Rac1,OsRAC2, OsRac2,OsRAC4, OsRac4, ROP4, OsRop4,OsRac3,OsRacB, RacB, OsRac6,OSRAC7, OsRac7, ROP5, OsRop5,PDS1, PDS, OsPDS, Pds, OsPDA,Osrac5, OsRac5, RACD, OsRacD, OsRACD
37359	12566582	Olga N Danilevskaya, Hermon P., Hantke S., Michael G Muszynski, Kollipara K., Evgueni V Ananiev	Duplicated fie genes in maize: expression pattern and imprinting suggest distinct functions.	Plant Cell	15(2)	425-38	2003	FIE2	OsFIE2, FIE, OsWD40-153,  OsDWD46, DWD46
37360	0	Lin X.H., Zhang D.P., Xie Y.F., Gao H.P., Zhang Q	Identifying and mapping a new gene for bacterial blight resistance in rice based on RFLP markers.	Phytopathology	86(11)	1156-1159	1996	XA22	Xa22, Xa22*, RXa20, Xa(t), Xa22(t)
37361	0	Zhang Q, Wang C.L., Zhao K.J., Yang W.C., Qiao F, Zhou Y.L., Jiang Q.X., Liu G.C.	Development of near-isogenic line CBB23 with a new resistance gene to bacterial blight in rice and its application.	Chin. J. Rice Sci.	16	206-210	2002	XA23	Xa23(t)*, Xa23(t), Xa23, Xa23-Ni 
37362	0	Zhang Q.S., Zhang J.J., Yang D.C., Li Y.S., Li S.Q., Zhu Y.G.	Characterisation and immunolocalisation of a pollen-specific calmodulin-binding protein from rice.	Function Plant Biol.	33	555-562	2006	_	OsPCBP
37363	17617177	Tao J., Zhang L., Chong K., Wang T.	OsRad21-3, an orthologue of yeast RAD21, is required for pollen development in Oryza sativa.	Plant J.	51(5)	919-30	2007	RAD21-3	OsRad21-3
37364	15599592	Fuchs I., Sonja St?lzle, Ivashikina N., Hedrich R.	Rice K+ uptake channel OsAKT1 is sensitive to salt stress.	Planta	221(2)	212-21	2005	AKT1	OsAKT1, Os-AKT1
37365	21626211	Hanada K., Hase T., Toyoda T., Shinozaki K., Okamoto M.	Origin and evolution of genes related to ABA metabolism and its signaling pathways.	J. Plant Res.	124(4)	455-65	2011		
37366	21620514	Kato-Noguchi H.	Convergent or parallel molecular evolution of momilactone A and B: potent allelochemicals, momilactones have been found only in rice and the moss Hypnum plumaeforme.	J. Plant Physiol.	168(13)	1511-6	2011	CPS4,KS4	OsCPS4, CYC1, OsCYC1, OsCyc1, cpsl3, OsCPSL3, OsCPSsyn, OsCyc1/OsCPS4, OsTPS15, Os-CPS4, TPS11, OsTPS11,OsKS4, KS4, KSL4, OsKSL4, DTS2, OsDTS2, OsTPS16, TPS16, TPS8, OsTPS8
37367	21277362	Yang C.C., Sakai H., Numa H., Itoh T.	Gene tree discordance of wild and cultivated Asian rice deciphered by genome-wide sequence comparison.	Gene	477(1-2)	53-60	2011		
37368	21622811	Shingaki-Wells RN., Huang S., Taylor N.L., Carroll A.J., Zhou W., Millar A.H.	Differential molecular responses of rice and wheat coleoptiles to anoxia reveal novel metabolic adaptations in amino acid metabolism for tissue tolerance.	Plant Physiol.	156(4)	1706-24	2011		
37369	21300183	Hwang H., Cho M.H., Hahn B.S., Lim H., Kwon Y.K., Hahn T.R., Bhoo S.H.	Proteomic identification of rhythmic proteins in rice seedlings.	Biochim. Biophys. Acta	1814(4)	470-9	2011		
37370	21442326	Tamura M., Tachida H.	Evolution of the number of LRRs in plant disease resistance genes.	Mol. Genet. Genomics	285(5)	393-402	2011		
37371	21573763	Yang R., Li J., Wang X., Zhou X.	Bayesian functional mapping of dynamic quantitative traits.	Theor. Appl. Genet.	123(3)	483-92	2011		
37373	21713535	Hojsgaard D.H., Mart?nez EJ., Acu?a CA., Quarin C.L., Pupilli F.	A molecular map of the apomixis-control locus in Paspalum procurrens and its comparative analysis with other species of Paspalum.	Theor. Appl. Genet.	123(6)	959-71	2011		
37374	21713536	Ahmadi N., Negr?o S., Katsantonis D., Frouin J., Ploux J., Letourmy P., Droc G., Babo P., Trindade H., Bruschi G., Greco R., Oliveira M.M., Piffanelli P., Courtois B.	Targeted association analysis identified japonica rice varieties achieving Na(+)/K (+) homeostasis without the allelic make-up of the salt tolerant indica variety Nona Bokra.	Theor. Appl. Genet.	123(6)	881-95	2011	SKC1,MYB3R2,GPA6,SOS2,_,SOS3,GSK1,LCS,HKT1,DREB1A	OsHKT8, HKT8, Os-HKT1;5, OsHKT1;5, HKT1;5, SKC1, qSKC-1(t), OsSKC1,OsMYB3R-2, OsMYB3R2, OsMSL07, MSL07, MSL7, DLN28, OsDLN28,OsNHX5, NHX5, OsGPA6,CIPK24, OsCIPK24, OsSOS2, OsSnRK3.22, SnRK3.22,OsCLP3, OsClp3, CLP3,CBL4, OsCBL4, OsSOS3,Os GSK1, OsGSK1, OsSK21/OsGSK1, OsSK21, SK21,OsHAK1, HAK1,OsHKT1, OsHKT2;1, HKT2;1, Ni (Nipponbare)-OsHKT1, Po (Pokkali)-HKT1, OsHKT1;1, HKT1;1,OsDREB1A, Os DREB1A, CBF3, OsCBF3, OsDREB1A/OsCBF3, ERF24, OsERF24, OsERF024, OsERF#024, AP2/EREBP#114, AP2/EREBP114, OsDREBL
37375	21437642	Cserh?ti M., Tur?czy Z., Zombori Z., Cserzo M., Dudits D., Pongor S., Gy?rgyey J.	Prediction of new abiotic stress genes in Arabidopsis thaliana and Oryza sativa according to enumeration-based statistical analysis.	Mol. Genet. Genomics	285(5)	375-91	2011		
37376	21377754	Ru?z-S?nchez M., Armada E., Mu?oz Y., Garc?a de Salamone IE., Aroca R., Ru?z-Lozano JM., Azc?n R.	Azospirillum and arbuscular mycorrhizal colonization enhance rice growth and physiological traits under well-watered and drought conditions.	J. Plant Physiol.	168(10)	1031-7	2011		
37377	21400017	Xiong J., Zhang L., Fu G., Yang Y., Zhu C., Tao L.	Drought-induced proline accumulation is uninvolved with increased nitric oxide, which alleviates drought stress by decreasing transpiration in rice.	J. Plant Res.	125(1)	55-64	2012		
37378	21601944	Kano A., Hosotani K., Gomi K., Yamasaki-Kokudo Y., Shirakawa C., Fukumoto T., Ohtani K., Tajima S., Izumori K., Tanaka K., Ishida Y., Nishizawa Y., Ichimura K., Tada Y., Akimitsu K.	D-Psicose induces upregulation of defense-related genes and resistance in rice against bacterial blight.	J. Plant Physiol.	168(15)	1852-7	2011	RBBI2-3,_,CHIB1,PRX135,LOX-L2,_,GNS4,GSTU24,POX22.3,WRKY62	RBBI2-3,TLP, PR5, OsTLP, OsPR5,Oschib1, chib1, PR-8, PR8, OsPR8, OsPR8b, PR8b,Pox, prx135, OsPRX1, OsPRX4,OsLOX-L2, LOX1.1, LOX L-2, LOX-2, OsLOX2, LOX2,OsPR2, PR2, OsGlu1, Glu1,OsPR2, PR2, Gns4, OsGns4, OsGLN2,OsGSTU24,POX22.3, OSPER, OsPOX, POX, Pir3, prx111, POX22, OsPOX1, POX1, OsPOX22.3, OsPR9, PR9,OsWRKY62, OsWRKY62.1, OsWRKY62.2, XB10, OsWRKY62-1, OsWRKY62-2
37379	22158467	Jeong D.H., Park S., Zhai J., Gurazada S.G., De Paoli E., Meyers B.C., Green P.J.	Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage.	Plant Cell	23(12)	4185-207	2011	MIR167D,MIR156E,MIR530,MIR5820,MIR164A,MIR167B,MIR408,MIR1319,miR159B,MIR1866,MIR167J,MIR167C,MIR168B,MIR5829,MIR169,MIR1861I,MIR1861J,MIR1872,MIR1428C,MIR169P,MIR159A,MIR820C,MIR396D,MIR820A,MIR820B,MIR172A,MIR171,MIR812V,MIR1850,MIR1863,MIR2118E,MIR319A,MIR2118F,MIR5516A,MIR1883A,MIR2118G,MIR156F,MIR160C,MIR160D,MIR164D,MIR164F,MIR160E,MIR169O,MIR169L,MIR395D,MIR395E,MIR395F,MIR156D,MIR395G,MIR395M,MIR395N,MIR395P,MIR395Q,MIR395R,MIR395S,MIR395T,MIR395U,miR159D,MIR395L,MIR160F,miR159F,miR535,miR159E,MIR395V,MIR395W,MIR413,MIR415,MIR416,MIR417,MIR418,MIR419,MIR420,MIR426,MIR437,MIR438,MIR439A,MIR439B,MIR439C,MIR439D,MIR439E,MIR439H,MIR439J,MIR441A,MIR441B,MIR441C,MIR442,MIR445A,MIR445B,MIR445C,MIR445D,MIR445E,MIR399G,MIR399H,MIR1430,MIR171H,MIR1433,MIR395H,MIR399E,MIR171G,MIR166A,MIR445F,MIR445G,MIR806A,MIR807A,MIR445I,MIR446,MIR531A2,MIR806B,MIR806C,MIR806D,MIR806E,MIR806F,MIR806G,MIR806H,MIR807B,MIR807C,MIR808,MIR809A,MIR809B,MIR809C,MIR809D,MIR809E,MIR809F,MIR809G,MIR809H,MIR810A,MIR811A,MIR811B,MIR811C,MIR812A,MIR812B,MIR812C,MIR812D,MIR812E,MIR813,MIR814A,MIR814B,MIR814C,MIR816,MIR817,MIR819A,MIR819B,MIR819C,MIR819D,MIR819E,MIR819F,MIR819G,MIR819H,MIR819I,MIR819J,MIR819K,MIR821A,MIR821B,MIR821C,MIR1317,MIR1424,MIR1426,MIR1428G,MIR1429,MIR1431,MIR1435,MIR1438,MIR1442,MIR1441,MIR1440,MIR1861A2,MIR169B,MIR1851,MIR398A,MIR815A,MIR815B,MIR818A,MIR818B,MIR818C,MIR818E,MIR1436,MIR164B,MIR395O,MIR395C,MIR1320,MIR169K,MIR169C,MIR169D,MIR169J,MIR169M,MIR171I,MIR1849,MIR395A,MIR1846D,MIR1847,MIR1852,MIR1853,MIR1854,MIR1855,MIR1856,MIR1857,MIR1858A,MIR1858B,MIR1859,MIR1861A,MIR1861B,MIR1861F,MIR1861L,MIR1861C,MIR1861D,MIR1861E,MIR1861K,MIR1861M,MIR1861G,MIR1861H,MIR1861N,MIR1862A,MIR1862B,MIR1862C,MIR1867,MIR1862E,MIR1864,MIR1865,MIR1868,MIR1869,MIR1870,MIR812H,MIR812I,MIR812J,MIR440,MIR1428B,MIR1423,MIR395B,MIR395I,MIR395J,MIR395K,MIR443,MIR1884A,MIR2090,MIR2092,MIR2093,MIR2094,MIR2095,MIR2096,MIR2097,MIR2098,MIR2099,MIR160A,MIR2100,MIR435,MIR1846B,MIR444B,MIR1846C,MIR169I,MIR166B,MIR162A,MIR156B,DCL1,MIR393B,MIR396B,MIR529A,MIR818D,MIR439G,MIR444C,MIR531A,MIR160B,MIR439F,MIR164C,MIR531B,MIR394,MIR1846A,MIR444E,MIR1439,MIR414,MIR444D,MIR2091,MIR812F,MIR815C,MIR444F,MIR2101,MIR2102,MIR2103,MIR2104,MIR2105,MIR2106,MIR2118Q,MIR2118R,MIR2120,MIR2121A,MIR2121B,MIR2122,MIR2123a,MIR2123b,MIR2123C,MIR2124A,MIR2124C,MIR2124D,MIR2124E,MIR2124F,MIR2124G,MIR2275A,MIR1884B,MIR2124H,MIR2124I,MIR2125,MIR2124B,MIR5803,MIR5804,MIR5805,MIR5806,MIR399C,MIR169E,MIR169g,MIR5807,MIR1319B,MIR2863C,MIR5152,MIR5516B,MIR5789,MIR5791,MIR5793,MIR5797,MIR5798,MIR5799,MIR5800,MIR5802,MIR1427,MIR1428A,MIR2055,MIR5811,MIR5813,MIR5814,MIR5817,MIR5826,MIR5821,MIR5822,MIR5823,MIR5824,MIR172C,MIR5825,MIR5828,MIR5831,MIR5832,MIR5833,MIR5834,MIR2873C,MIR5143A,MIR5147,MIR5491,MIR5795,MIR5796,MIR5816,MIR5808,MIR5801,MIR5812,MIR5827,MIR5830,MIR5159,MIR5835,MIR399F,MIR5143B,MIR169N,MIR1318,MIR5508,MIR5513,MIR5519,MIR5485,MIR1862D,MIR166C,MIR166D,MIR5794,MIR166I,MIR171B,MIR156L,MIR5836,MIR5837,MIR812S,MIR812T,MIR812Q,MIR812R,MIR818F,MIR1863C,MIR2871B,MIR5179,MIR5792,MIR5815,MIR5819,MIR812P,MIR812U,MIR1860,MIR169H,MIR396F,miR159C,MIR164E,MIR1876,MIR1878,MIR1880,MIR1881,MIR1883B,MIR396A,MIR319B,MIR156A,MIR1871,MIR398B,MIR2118A,MIR2118P,MIR2118B,MIR2118C,MIR2118H,MIR2118J,MIR2118I,MIR2118K,MIR2118M,MIR393,MIR2118N,MIR2118L,miR1874,MIR444A,MIR171D,MIR5788,MIR2118D,MIR166H,MIR166L,MIR1882A,MIR156K,MIR1846E,MIR1848,MIR3979,MIR167E,MIR1877,MIR390,MIR5150,MIR399B,MIR5810,MIR2275B,MIR2118O,MIR5809,MIR171E,MIR1882B,MIR1882G,MIR1882H,MIR1879,MIR166F,MIR399I,MIR1428D,MIR171C,MIR166E,MIR529B,MIR169F,MIR162B,MIR166M,MIR1437,MIR2275D,MIR167A,MIR171F,MIR168A,miR827,MIR156C,SDT,MIR166G,MIR166N,MIR167H,MIR167I,MIR172B,MIR397A,MIR397B,MIR1882E,MIR399D,MIR156G,MIR172D,MIR166K,MIR167F,MIR167G,MIR399A,MIR399J,MIR1428E,MIR1425,MIR528,MIR399K,MIR1875,MIR1873,MIR1882F,MIR1882D,MIR156I,MIR396C,MIR1882C,MIR5818	miR167d, osa-miRNA167d, osa-miR167d, osa-miR167d-3p, osa-miR167d-5p,miR156e, OsmiR156e, osmiR156e, osa-miR156e, osa-MIR156e,miR530, Osa-miR530, OsmiR530, osa-MIR530, osa-miR530 osa-miR530-3p, osa-miR530-5p,miR5820, osa-miR5820, osa-MIR5820,miR164a, osa-miR164a,miR167b, osa-miR167b,miR408, osa-MIR408osa-miR408 osa-miR408-3p osa-miR408-5p, OsMIR408 ,miR1319, osa-miR1319, osa-MIR1319, osa-MIR1319a, osa-miR1319a,OsmiR159b, osa-MIR159b,miR1866, osa-miR1866, osa-MIR1866, Osa-miR1866-5p, Osa-miR1866-3p,miR167j, osa-miR167j, osa-MIR167j,miR167c, osa-miR167cosa-miR167c-3p osa-miR167c-5p,miR168b, osa-miR168b, osa-MIR168b,miR5829, osa-miR5829, osa-MIR5829,miR169, osa-miR169, osa-MIR169a, miR169a, osa-miR169a,miR1861i, osa-miR1861i, osa-MIR1861i,miR1861j, osa-miR1861j, osa-MIR1861j,miR1872, osa-miR1872, osa-MIR1872,miR1428c, osa-miR1428c, osa-MIR1428c,miR169p, osa-miR169p, miR169-p,miR159a, osa-miR159a, osa-MIR159a, OsmiR159a, OsmiR159a.2, miR159a.2, OsmiR159a.1, miR159a.1, osa-miR159a.1, osa-miR159a.2,miR820c, osa-miR820c, osa-MIR820c, OsmiR820c,miR396d, osa-miR396d, osa-MIR396d,miR820a, osa-miR820a, osa-MIR820a, OsmiR820a,miR820b, osa-miR820b, osa-MIR820b, OsmiR820b,OsmiR172a, miR172a, osa-MIR172a, Osa-miR172a ,miR171, osa-miR171, miR171a, osa-miR171a, osa-MIR171a,miR812v, osa-miR812v, osa-MIR812v,miR1850, osa-miR1850, osa-MIR1850, osa-miR1850.1, osa-miR1850.2, osa-miR1850.3,miR1863, osa-miR1863, osa-MIR1863, osa-MIR1863a, osa-miR1863a,miR2118e, osa-miR2118e, osa-MIR2118e,OsmiR319a, Osa-miR319a, osa-MIR319aosa-miR319a osa-miR319a-3p osa-miR319a-3p.2-3p,miR2118f, osa-miR2118f, osa-MIR2118f,miR5516a, osa-miR5516a, osa-MIR5516a,miR1883a, osa-miR1883a, osa-MIR1883a,miR2118g, osa-miR2118g, osa-MIR2118g,miR156f, osmiR156f, OsmiR156f, osa-miR156f, osa-MIR156fosa-miR156f-3p osa-miR156f-5p,miR160c, osa-miR160c, osa-MIR160cosa-miR160c-3p osa-miR160c-5p,miR160d, osa-miR160d, osa-MIR160dosa-miR160d-3p osa-miR160d-5p,miR164d, osa-miR164d,miR164f, osa-miR164f,miR160e, osa-miR160e, osa-MIR160eosa-miR160e-5p,miR169o, osa-miR169o, osa-MIR169o,miR169l, osa-miR169l, osa-MIR169l,OsmiR395d, miR395d, osa-MIR395d,OsmiR395e, miR395e, osa-MIR395e,OsmiR395f, miR395f, osa-MIR395f,miR156d, OsmiR156d, osmiR156d, osa-miR156d, osa-MIR156d,OsmiR395g, miR395g, osa-MIR395g,OsmiR395m, miR395m, osa-MIR395m,OsmiR395n, miR395n, osa-MIR395n,OsmiR395p, miR395p, osa-MIR395p,OsmiR395q, miR395q, osa-MIR395q,OsmiR395r, miR395r, osa-MIR395r,OsmiR395s, miR395s, osa-MIR395s,OsmiR395t, miR395t, osa-MIR395t,OsmiR395u, miR395u, osa-MIR395u,OsmiR159d, osa-MIR159d,OsmiR395l, miR395l, osa-MIR395l,miR160f, osa-miR160f, osa-MIR160f, osa-miR160f-3p osa-miR160f-5p,OsmiR159f, osa-MIR159f,OsmiR535, osa-MIR535osa-miR535 osa-miR535-3p osa-miR535-5p,OsmiR159e, osa-MIR159e,OsmiR395v, miR395v, osa-MIR395v,OsmiR395w, miR395w, osa-MIR395w,miR413, osa-MIR413,miR415, osa-MIR415,miR416, osa-MIR416,miR417, osa-MIR417,miR418, osa-MIR418,miR419, osa-MIR419,miR420, osa-MIR420,miR426, osa-MIR426,miR437, osa-MIR437,miR438, osa-MIR438,miR439a, osa-MIR439a,miR439b, osa-MIR439b,miR439c, osa-MIR439c,miR439d, osa-MIR439d,miR439e, osa-MIR439e,miR439h, osa-MIR439h,miR439j, osa-MIR439j,miR441a, osa-MIR441a,miR441b, osa-MIR441b,miR441c, osa-MIR441c,miR442, osa-MIR442,miR445a, osa-MIR445a,miR445b, osa-MIR445b,miR445c, osa-MIR445c,miR445d, osa-MIR445d,miR445e, osa-MIR445e,OsmiR399g, osa-MIR399g,OsmiR399h, osa-MIR399h,miR1430, osa-miR1430, osa-MIR1430,miR171h, osa-miR171h,miR1433, osa-miR1433, osa-MIR1433,OsmiR395h, miR395h, osa-MIR395h, OsamiR395h ,OsmiR399e, osa-MIR399e,miR171g, osa-miR171g,miR166a, osa-miR166aosa-miR166a-3p osa-miR166a-5p,miR445f, osa-MIR445f,miR445g, osa-MIR445g,miR806a, osa-MIR806a,miR807a, osa-MIR807a,miR445i, osa-MIR445i,miR446, osa-MIR446,miR531a2, osa-MIR531a2,miR806b, osa-MIR806b,miR806c, osa-MIR806c,miR806d, osa-MIR806d,miR806e, osa-MIR806e,miR806f, osa-MIR806f,miR806g, osa-MIR806g,miR806h, osa-MIR806h,miR807b, osa-MIR807b,miR807c, osa-MIR807c,miR808, osa-MIR808,miR809a, osa-MIR809a,miR809b, osa-MIR809b,miR809c, osa-MIR809c,miR809d, osa-MIR809d,miR809e, osa-MIR809e,miR809f, osa-MIR809f,miR809g, osa-MIR809g,miR809h, osa-MIR809h,miR810a, osa-miR810a, osa-MIR810a,miR811a, osa-miR811a, osa-MIR811a,miR811b, osa-miR811b, osa-MIR811b,miR811c, osa-miR811c, osa-MIR811c,miR812a, osa-miR812a, osa-MIR812a,miR812b, osa-miR812b, osa-MIR812b,miR812c, osa-miR812c, osa-MIR812c,miR812d, osa-miR812d, osa-MIR812d,miR812e, osa-miR812e, osa-MIR812e,miR813, osa-miR813, osa-MIR813,miR814a, osa-miR814a, osa-MIR814a,miR814b, osa-miR814b, osa-MIR814b,miR814c, osa-miR814c, osa-MIR814c,miR816, osa-miR816, osa-MIR816,miR817, osa-miR817, osa-MIR817,miR819a, osa-miR819a, osa-MIR819a,miR819b, osa-miR819b, osa-MIR819b,miR819c, osa-miR819c, osa-MIR819c,miR819d, osa-miR819d, osa-MIR819d,miR819e, osa-miR819e, osa-MIR819e,miR819f, osa-miR819f, osa-MIR819f,miR819g, osa-miR819g, osa-MIR819g,miR819h, osa-miR819h, osa-MIR819h,miR819i, osa-miR819i, osa-MIR819i,miR819j, osa-miR819j, osa-MIR819j,miR819k, osa-miR819k, osa-MIR819k,miR821a, osa-miR821a, osa-MIR821a,miR821b, osa-miR821b, osa-MIR821b,miR821c, osa-miR821c, osa-MIR821c,miR1317, osa-miR1317, osa-MIR1317,miR1424, osa-miR1424, osa-MIR1424,miR1426, osa-miR1426, osa-MIR1426,miR1428g, osa-miR1428g, osa-MIR1428g,miR1429, osa-miR1429, osa-MIR1429osa-miR1429-3p osa-miR1429-5p,miR1431, osa-miR1431, osa-MIR1431,miR1435, osa-miR1435, osa-MIR1435,miR1438, osa-miR1438, osa-MIR1438,miR1442, osa-miR1442, osa-MIR1442,miR1441, osa-miR1441, osa-MIR1441,miR1440, osa-miR1440, osa-MIR1440,miR1861a2, osa-miR1861a2, osa-MIR1861a2,miR169b, osa-miR169b, osa-MIR169b,miR1851, osa-miR1851, osa-MIR1851,miR398a, osa-miR398a, osa-MIR398a,miR815a, osa-miR815a, osa-MIR815a, OsmiR815a,miR815b, osa-miR815b, osa-MIR815b, OsmiR815b,miR818a, osa-miR818a, osa-MIR818a,miR818b, osa-miR818b, osa-MIR818b,miR818c, osa-miR818c, osa-MIR818c,miR818e, osa-miR818e, osa-MIR818e,miR1436, osa-miR1436, osa-MIR1436,miR164b, osa-miR164b,OsmiR395o, miR395o, osa-MIR395o,OsmiR395c, miR395c, osa-MIR395c,miR1320, osa-miR1320, osa-MIR1320osa-miR1320-3p osa-miR1320-5p,miR169k, osa-miR169k, osa-MIR169k,miR169c, osa-miR169c, osa-MIR169c,miR169d, osa-miR169d, osa-MIR169d,miR169j, osa-miR169j, osa-MIR169j,miR169m, osa-miR169m, osa-MIR169m,miR171i, osa-miR171iosa-miR171i-3p osa-miR171i-5p,miR1849, osa-miR1849, osa-MIR1849,OsmiR395a, miR395a, osa-MIR395a,miR1846d, osa-miR1846d, osa-MIR1846dosa-miR1846d-3p osa-miR1846d-5p,miR1847, osa-miR1847, osa-MIR1847,miR1852, osa-miR1852, osa-MIR1852,miR1853, osa-miR1853, osa-MIR1853osa-miR1853-3p,miR1854, osa-miR1854, osa-MIR1854,miR1855, osa-miR1855, osa-MIR1855,miR1856, osa-miR1856, osa-MIR1856,miR1857, osa-miR1857, osa-MIR1857osa-miR1857-3p osa-miR1857-5p,miR1858a, osa-miR1858a, osa-MIR1858a,miR1858b, osa-miR1858b, osa-MIR1858b,miR1859, osa-miR1859, osa-MIR1859 ,miR1861a, osa-miR1861a, osa-MIR1861a,miR1861b, osa-miR1861b, osa-MIR1861b,miR1861f, osa-miR1861f, osa-MIR1861f,miR1861l, osa-miR1861l, osa-MIR1861l,miR1861c, osa-miR1861c, osa-MIR1861c,miR1861d, osa-miR1861d, osa-MIR1861d,miR1861e, osa-miR1861e, osa-MIR1861e,miR1861k, osa-miR1861k, osa-MIR1861k,miR1861m, osa-miR1861m, osa-MIR1861m,miR1861g, osa-miR1861g, osa-MIR1861g,miR1861h, osa-miR1861h, osa-MIR1861h,miR1861n, osa-miR1861n, osa-MIR1861n,miR1862a, osa-miR1862a, osa-MIR1862a,miR1862b, osa-miR1862b, osa-MIR1862b,miR1862c, osa-miR1862c, osa-MIR1862c,miR1867, osa-miR1867, osa-MIR1867,miR1862e, osa-miR1862e, osa-MIR1862e,miR1864, osa-miR1864, osa-MIR1864,miR1865, osa-miR1865, osa-MIR1865osa-miR1865-3p osa-miR1865-5p,miR1868, osa-miR1868, osa-MIR1868,miR1869, osa-miR1869, osa-MIR1869,miR1870, osa-miR1870, osa-MIR1870osa-miR1870-3p osa-miR1870-5p,miR812h, osa-miR812h, osa-MIR812h,miR812i, osa-miR812i, osa-MIR812i,miR812j, osa-miR812j, osa-MIR812j,miR440, osa-MIR440,miR1428b, osa-miR1428b, osa-MIR1428b,miR1423, osa-miR1423, osa-MIR1423, miR1423bosa-miR1423-5p,OsmiR395b, miR395b, osa-MIR395b,OsmiR395i, miR395i, osa-MIR395i,OsmiR395j, miR395j, osa-MIR395j,OsmiR395k, miR395k, osa-MIR395k,miR443, osa-MIR443,miR1884a, osa-miR1884a, osa-MIR1884a,miR2090, osa-miR2090, osa-MIR2090,miR2092, osa-miR2092, osa-MIR2092,miR2093, osa-miR2093, osa-MIR2093osa-miR2093-5p,miR2094, osa-miR2094, osa-MIR2094,miR2095, osa-miR2095, osa-MIR2095,miR2096, osa-miR2096, osa-MIR2096osa-miR2096-3p osa-miR2096-5p,miR2097, osa-miR2097, osa-MIR2097osa-miR2097-5p,miR2098, osa-miR2098, osa-MIR2098,miR2099, osa-miR2099, osa-MIR2099,miR160a, osa-miR160a, osa-MIR160aosa-miR160a-3p osa-miR160a-5p, OsMIR160a ,miR2100, osa-miR2100, osa-MIR2100,miR435, osa-MIR435,miR1846b, osa-miR1846b, osa-MIR1846bosa-miR1846b-5p,miR444b, osa-MIR444b, osa-miR444b, osa-miR444b.1, osa-miR444b.2,miR1846c, osa-miR1846c, osa-MIR1846c,miR169i, osa-miR169i, osa-MIR169iosa-miR169i-3p osa-miR169i-5p.2,miR166b, osa-miR166bosa-miR166b-3p osa-miR166b-5p, OsmiR166b,miR162a, osa-miR162a, osa-MIR162a, OsMIR162a,miR156b, OsmiR156b, osmiR156b, osa-miR156b, osa-MIR156b, miR156b*osa-miR156b-3p osa-miR156b-5p,Dcl1, OsDCL1, osDCL1, Os-DCL1, OsDCL1a, DCL1a,OsmiR393b, miR393b, osa-MIR393bosa-miR393b osa-miR393b-3p osa-miR393b-5p,miR396b, osa-miR396b, osa-MIR396bosa-miR396b-3p osa-miR396b-5p, OsmiR396b,miR529a, Osa-miR529a, OsmiR529a,miR818d, osa-miR818d, osa-MIR818d,miR439g, osa-MIR439g,miR444c, osa-MIR444c, osa-miR444c, osa-miR444c.1, osa-miR444c.2,miR531, osa-MIR531, osa-MIR531a,miR160b, osa-miR160b, osa-MIR160b, NolmiR-36osa-miR160b-3p osa-miR160b-5p, OsMIR160b,miR439f, osa-MIR439f,miR164c, osa-miR164c,miR531b, osa-MIR531b,OsmiR394, miR394, osa-MIR394,miR1846a, osa-miR1846a, osa-MIR1846aosa-miR1846a-5p,miR444e, osa-MIR444e,miR1439, osa-miR1439, osa-MIR1439,miR414, osa-MIR414,miR444d, osa-MIR444d, osa-miR444d, osa-miR444d.1, osa-miR444d.2, osa-miR444d.3,miR2091, osa-miR2091, osa-MIR2091, Osa-MIR2091-5p ,miR812f, osa-miR812f, osa-MIR812f,miR815c, osa-miR815c, osa-MIR815c, OsmiR815c,miR444f, osa-MIR444f,miR2101, osa-miR2101, osa-MIR2101,miR2102, osa-miR2102, osa-MIR2102,miR2103, osa-miR2103, osa-MIR2103,miR2104, osa-miR2104, osa-MIR2104,miR2105, osa-miR2105, osa-MIR2105,miR2106, osa-miR2106, osa-MIR2106,miR2118q, osa-miR2118q, osa-MIR2118q,miR2118r, osa-miR2118r, osa-MIR2118r,miR2120, osa-miR2120, osa-MIR2120,miR2121a, osa-miR2121a, osa-MIR2121a,miR2121b, osa-miR2121b, osa-MIR2121b,miR2122, osa-miR2122, osa-MIR2122,miR2123a, osa-miR213a, osa-MIR2123a,miR2123b, osa-miR213b, osa-MIR2123b,miR2123c, osa-miR213c, osa-MIR2123c,miR2124a, osa-miR214a, osa-MIR2124a,miR2124c, osa-miR214c, osa-MIR2124c,miR2124d, osa-miR214d, osa-MIR2124d,miR2124e, osa-miR214e, osa-MIR2124e,miR2124f, osa-miR214f, osa-MIR2124f,miR2124g, osa-miR214g, osa-MIR2124g,miR2275a, osa-miR2275a, osa-MIR2275a,miR1884b, osa-miR1884b, osa-MIR1884b,miR2124h, osa-miR214h, osa-MIR2124h,miR2124i, osa-miR214i, osa-MIR2124i,miR2125, osa-miR215, osa-MIR2125,miR2124b, osa-miR214b, osa-MIR2124b,miR5803, osa-miR5803, osa-MIR5803,miR5804, osa-miR5804, osa-MIR5804,miR5805, osa-miR5805, osa-MIR5805,miR5806, osa-miR5806, osa-MIR5806,OsmiR399c, osa-MIR399c, miR399c,miR169e, osa-miR169e, osa-MIR169e,MIR-169g, osa-MIR169g,miR5807, osa-miR5807, osa-MIR5807,miR1319b, osa-miR1319b, osa-MIR1319b,miR2863c, osa-miR2863c, osa-MIR2863c,miR5152, osa-miR5152, osa-MIR5152,miR5516b, osa-miR5516b, osa-MIR5516b,miR5789, osa-miR5789, osa-MIR5789,miR5791, osa-miR5791, osa-MIR5791,miR5793, osa-miR5793, osa-MIR5793,miR5797, osa-miR5797, osa-MIR5797,miR5798, osa-miR5798, osa-MIR5798,miR5799, osa-miR5799, osa-MIR5799,miR5800, osa-miR5800, osa-MIR5800,miR5802, osa-miR5802, osa-MIR5802,miR1427, osa-miR1427, osa-MIR1427,miR1428a, osa-miR1428a, osa-MIR1428a,miR2055, OsmiR2055, osa-miR2055, osa-MIR2055,miR5811, osa-miR5811, osa-MIR5811,miR5813, osa-miR5813, osa-MIR5813,miR5814, osa-miR5814, osa-MIR5814,miR5817, osa-miR5817, osa-MIR5817,miR5826, osa-miR5826, osa-MIR5826,miR5821, osa-miR5821, osa-MIR5821,miR5822, osa-miR5822, osa-MIR5822,miR5823, osa-miR5823, osa-MIR5823,miR5824, osa-miR5824, osa-MIR5824,OsmiR172c, miR172c, osa-MIR172c, Osa-miR172c ,miR5825, osa-miR5825, osa-MIR5825,miR5828, osa-miR5828, osa-MIR5828,miR5831, osa-miR5831, osa-MIR5831,miR5832, osa-miR5832, osa-MIR5832,miR5833, osa-miR5833, osa-MIR5833,miR5834, osa-miR5834, osa-MIR5834,miR2873c, osa-miR2873c, osa-MIR2873c,miR5143a, osa-miR5143a, osa-MIR5143a,miR5147, osa-miR5147, osa-MIR5147,miR5491, osa-miR5491, osa-MIR5491,miR5795, osa-miR5795, osa-MIR5795,miR5796, osa-miR5796, osa-MIR5796,miR5816, osa-miR5816, osa-MIR5816,miR5808, osa-miR5808, osa-MIR5808,miR5801, osa-miR5801, osa-MIR5801,miR5812, osa-miR5812, osa-MIR5812,miR5827, osa-miR5827, osa-MIR5827,miR5830, osa-miR5830, osa-MIR5830,miR5159, osa-miR5159, osa-MIR5159,miR5835, osa-miR5835, osa-MIR5835,OsmiR399f, osa-miR399f, osa-MIR399f, Os-miR399f,miR5143b, osa-miR5143b, osa-MIR5143b,miR169n, osa-miR169n, osa-MIR169n,miR1318, osa-miR1318, osa-MIR1318,miR5508, osa-miR5508, osa-MIR5508,miR5513, osa-miR5513, osa-MIR5513,miR5519, osa-miR5519, osa-MIR5519,miR5485, osa-miR5485, osa-MIR5485,miR1862d, osa-miR1862d, osa-MIR1862d,miR166c, osa-miR166cosa-miR166c-3p osa-miR166c-5p,miR166d, osa-miR166dosa-miR166d-3p osa-miR166d-5p,miR5794, osa-miR5794, osa-MIR5794,miR166i, osa-miR166iosa-miR166i-3p,miR171b, osa-miR171b,miR156l, OsmiR156l, osmiR156l, osa-miR156l, osa-MIR156l, osa-miR156l-3p, osa-miR156l-5p,miR5836, osa-miR5836, osa-MIR5836,miR5837, osa-miR5837, osa-MIR5837, miR5837.1, miR5837.2,miR812s, osa-miR812s, osa-MIR812s,miR812t, osa-miR812t, osa-MIR812t,miR812q, osa-miR812q, osa-MIR812q,miR812r, osa-miR812r, osa-MIR812r,miR818f, osa-miR818f, osa-MIR818f,miR1863c, osa-miR1863c, osa-MIR1863c,miR2871b, osa-miR2871b, osa-MIR2871b,miR5179, osa-miR5179, osa-MIR5179,miR5792, osa-miR5792, osa-MIR5792,miR5815, osa-miR5815, osa-MIR5815,miR5819, osa-miR5819, osa-MIR5819,miR812p, osa-miR812p, osa-MIR812p,miR812u, osa-miR812u, osa-MIR812u,miR1860, osa-miR1860, osa-MIR1860osa-miR1860-3p osa-miR1860-5p,miR169h, osa-miR169h, osa-MIR169h,miR396f, osa-miR396f, osa-MIR396fosa-miR396f-3p osa-miR396f-5p,OsmiR159c, osa-MIR159c,miR164e, osa-MIR164e,miR1876, osa-miR1876, osa-MIR1876,miR1878, osa-miR1878, osa-MIR1878,miR1880, osa-miR1880, osa-MIR1880,miR1881, osa-miR1881, osa-MIR1881,miR1883b, osa-miR1883b, osa-MIR1883b,miR396a, osa-miR396a, osa-MIR396aosa-miR396a-3p osa-miR396a-5p, OsmiR396a,OsmiR319b, Osa-miR319b,miR156a, OsmiR156a, osmiR156a, osa-miR156a, osa-MIR156a,miR1871, osa-miR1871, osa-MIR1871,miR398b, osa-miR398b, osa-MIR398b, OsmiR398b,miR2118a, osa-miR2118a, osa-MIR2118a,miR2118p, osa-miR2118p, osa-MIR2118p,miR2118b, osa-miR2118b, osa-MIR2118b,miR2118c, osa-miR2118c, osa-MIR2118c,miR2118h, osa-miR2118h, osa-MIR2118h,miR2118j, osa-miR2118j, osa-MIR2118j,miR2118i, osa-miR2118i, osa-MIR2118i,miR2118k, osa-miR2118k, osa-MIR2118k,miR2118m, osa-miR2118m, osa-MIR2118m,OsmiR393, osa-MIR393, osa-MIR393a, OsmiR393a, miR393a ,miR2118n, osa-miR2118n, osa-MIR2118n,miR2118l, osa-miR2118l, osa-MIR2118l,OsmiR1874, osa-MIR1874osa-miR1874 osa-miR1874-3p,OsMIR444a, osa-MIR444a, miR444aosa-miR444a osa-miR444a-3p.1 osa-miR444a-3p.2 osa-miR444a-5p,miR171d, osa-miR171dosa-miR171d-3p osa-miR171d-5p,miR5788, osa-miR5788, osa-MIR5788, NolmiR-3,miR2118d, osa-miR2118d, osa-MIR2118d,miR166h, osa-miR166hosa-miR166h-3p osa-miR166h-5p,miR166l, osa-miR166losa-miR166l-3p osa-miR166l-5p,miR1882a, osa-miR1882a, osa-MIR1882a,miR156k, OsmiR156k, osmiR156k, osa-miR156k, osa-MIR156k,miR1846e, osa-miR1846e, osa-MIR1846e,miR1848, osa-miR1848, osa-MIR1848,miR3979, osa-miR3979, osa-MIR3979osa-miR3979-3p osa-miR3979-5p,miR167e, osa-miR167e, osa-miRNA167e osa-miR167e-3p osa-miR167e-5p,miR1877, osa-miR1877, osa-MIR1877,OsmiR390, miR390, osa-MIR390osa-miR390, osa-miR390-3p, osa-miR390-5p,miR5150, osa-miR5150, osa-MIR5150osa-miR5150-3p osa-miR5150-5p,OsmiR399b, osa-MIR399b, miR399b,miR5810, osa-miR5810, osa-MIR5810,miR2275b, osa-miR2275b, osa-MIR2275b,miR2118o, osa-miR2118o, osa-MIR2118o,miR5809, osa-miR5809, osa-MIR5809,miR171e, osa-miR171e, osa-miR171e-3p, osa-miR171e-5p,miR1882b, osa-miR1882b, osa-MIR1882b,miR1882g, osa-miR1882g, osa-MIR1882g,miR1882h, osa-miR1882h, osa-MIR1882h,miR1879, osa-miR1879, osa-MIR1879,miR166f, osa-miR166f,OsmiR399i, osa-MIR399i, miR399i,miR1428d, osa-miR1428d, osa-MIR1428d,miR171c, osa-miR171cosa-miR171c-3p osa-miR171c-5p,miR166e, osa-miR166eosa-miR166e-3p osa-miR166e-5p,miR529b, Osa-miR529b, OsmiR529b,miR169f, osa-miR169f, osa-MIR169f, osa-miR169f.2,miR162b, osa-miR162b, osa-MIR162b ,miR166m, osa-miR166m,miR1437, osa-miR1437, osa-MIR1437, osa-MIR1437a, osa-miR1437a,miR2275d, osa-miR2275d, osa-MIR2275d,miR167a, osa-miR167aosa-miR167a-3p osa-miR167a-5p, OsmiR167a,miR171f, osa-miR171f, osa-miR171f-3p osa-miR171f-5p,miR168a, osa-miR168a, osa-MIR168a osa-miR168a-3p osa-miR168a-5p, OsMIR168a,miR827a, OsmiR827a, miR827, osa-miR827, osa-MIR827, OsMiR827, miR827b, osa-miR827b, osa-MIR827b,miR156c, OsmiR156c, osmiR156c, osa-miR156c,osa-MIR156c, miR156c*osa-miR156c-3p osa-miR156c-5p,miR156h, OsmiR156h, osmiR156h, osa-miR156h, osa-MIR156hosa-miR156h-3p osa-miR156h-5p,miR166g, osa-miR166gosa-miR166g-3p osa-miR166g-5p,miR166n, osa-miR166n, osa-MIR166n, miR166j, osa-miR166j, osa-MIR166j, osa-miR166j-3p, osa-miR166j-5p,miR167h, osa-miR167h, osa-MIR167hosa-miR167h-3p osa-miR167h-5p,miR167i, osa-miR167iosa-miR167i-3p osa-miR167i-5p,OsmiR172b, miR172b, osa-MIR172b, Osa-miR172b ,miR397a, osa-miR397a, osa-MIR397a, OsmiR397a,miR397b, osa-miR397b, osa-MIR397b, miR397b*, OsmiR397b, Os-MIR397b,miR1882e, osa-miR1882e, osa-MIR1882e, osa-miR1882e-5p,OsmiR399d, osa-miR399d, osa-MIR399d, Os-miR399d, miR399d,miR156g, OsmiR156g, osmiR156g, osa-miR156g, osa-MIR156gosa-miR156g-3p osa-miR156g-5p,OsmiR172d, miR172d, osa-MIR172d osa-miR172d osa-miR172d-3p osa-miR172d-5p, Osa-miR172d,miR166k, osa-miR166kosa-miR166k-3p osa-miR166k-5p,miR167f, osa-miR167f, osa-miRNA167f ,miR167g, osa-miR167g, osa-miRNA167g ,OsmiR399a, osa-miR399a, osa-MIR399a, Os-miR399a, miR399a,OsmiR399j, osa-miR399j, osa-MIR399j, Os-miR399j, miR399j,OsmiR1428e, miR1428e, osa-miR1428e, osa-MIR1428e, miR1428e_3posa-miR1428e-3p,OsmiR1425, miR1425, osa-miR1425, osa-MIR1425, osa-miR1425-3p, osa-miR1425-5p,miR528, Osa-miR528, OsmiR528, OsMIR528, osa-MIR528, miR528*, osa-miR528, osa-miR528-5p, MIR528-T1, MIR528-T2,OsmiR399k, osa-MIR399k,miR1875, osa-miR1875, osa-MIR1875,miR1873, osa-miR1873, osa-MIR1873,miR1882f, osa-miR1882f, osa-MIR1882f,miR1882d, osa-miR1882d, osa-MIR1882d,miR156i, OsmiR156i, osmiR156i, osa-miR156i, osa-MIR156i,miR396c, osa-miR396c, osa-MIR396c, osa-miR396c-3p, osa-miR396c-5p, OsmiR396c,miR1882c, osa-miR1882c, osa-MIR1882c,miR5818, osa-miR5818, osa-MIR5818
37380	22138690	Huang X., Zhao Y., Wei X., Li C., Wang A., Zhao Q., Li W., Guo Y., Deng L., Zhu C., Fan D., Lu Y., Weng Q., Liu K., Zhou T., Jing Y., Si L., Dong G., Huang T., Lu T., Feng Q., Qian Q., Li J., Han B.	Genome-wide association study of flowering time and grain yield traits in a worldwide collection of rice germplasm.	Nat. Genet.	44(1)	32-9	2012	LK3,_,ASP1,_,C,ALK,RC,WX1	lk3(t), lk3(t)*, SG3, GS3, SG3-GS3, OsGW3, OsGS3, RGG3/GS3/Mi/OsGGC1, RGG3, Mi, OsGGC1, GGC1, OsSYL3, SYL3, TT2, OsTT2,OsRAL6,OsAsp1,IBF1, OsFBX310, FBX310,  OsFBX310, FBX310,C, Cp, OsC1, Os-C1, C1, OsMyb6, Myb6, OsPL6, PL6, OsGL1E, GL1E, Os2R_MYB63, 2R_MYB63, OsC1PLSr, C1PLSr,alk, SSII-3, OsSSIIa, OsSSII-3, SSIIa, SSS2A, OsSSIIaChr6, SS2a,Rc, OsbHLH017, OsbHLH17, SD7-1, qSD7-1/qPC7, OsGL3C, GL3C,wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx
37381	17601170	Jorge G??mez-Ariza, Campo S., Rufat M., Montserrat Estop??, Messeguer J., Blanca San Segundo, Mar??a Coca	Sucrose-mediated priming of plant defense responses and broad-spectrum disease resistance by overexpression of the maize pathogenesis-related PRms protein in rice plants.	Mol. Plant Microbe Interact.	20(7)	832-42	2007	PR1A,POX22.3,NH1,_,PR10A,SCI1,PAL,PR1B	OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1, OsPR1b, PR1alpha, OsPR1alpha,POX22.3, OSPER, OsPOX, POX, Pir3, prx111, POX22, OsPOX1, POX1, OsPOX22.3, OsPR9, PR9,OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2, DLN5, OsDLN5,  OsBTBA1, BTBA1,TLP, PR5, OsTLP, OsPR5,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,Sci1, PR6, OsSci1, OsPR6, MGBP1, OsMGBP1,OsPAL, OsPAL08, PAL2, GP-28, GP28, PAL08, OsPAL2, OsPAL8, PAL8,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1, OsPR1a, PR1a
37382	14730064	Kolukisaoglu U., Weinl S., Blazevic D., Batistic O., J?rg Kudla	Calcium sensors and their interacting protein kinases: genomics of the Arabidopsis and rice CBL-CIPK signaling networks.	Plant Physiol.	134(1)	43-58	2004	SOS3,CIPK15,CBL10,CIPK14,CIPK17,CIPK04,CIPK07,CIPK13,CIPK10,CIPK03,CIPK28,CIPK21,CIPK29,CIPK06,CIPK16,CIPK27,CIPK18,CIPK26,PK7,CBL9,CIPK01,CIPK05,CIPK09,CIPK20,CIPK22,PK4,CBL5,CIPK08,CIPK30,CBL1,CBL8,CIPK02,CBL2,CBL7,CBL6,CIPK23,CIPK11,CIPK25,SOS2,CBL3	CBL4, OsCBL4, OsSOS3,OsCIPK15, OsSnRK3.31, SnRK3.31,OsCBL10,OsCIPK14, OsSnRK3.33, SnRK3.33,OsCIPK17, OsSnRK3.14, SnRK3.14,OsCIPK04, CIPK4, OsCIPK4, OsSnRK3.35, SnRK3.35,OsCIPK07, CIPK7, OsCIPK7, OsSnRK3.13, SnRK3.13,OsCIPK13, OsSnRK3.1, SnRK3.1,OsCIPK10, OsSnRK3.12, SnRK3.12,OsCIPK03, CIPK3, OsCIPK3, OsSnRK3.27, SnRK3.27,OsCIPK28, OsSnRK3.18, SnRK3.18,OsCIPK21, OsSnRK3.24, SnRK3.24,OsCIPK29, OsSnRK3.25, SnRK3.25,OsCIPK06, CIPK6, OsCIPK6, OsSnRK3.28, SnRK3.28,OsCIPK16, OsSnRK3.29, SnRK3.29,OsCIPK27, OsSnRK3.30, SnRK3.30,OsCIPK18, OsSnRK3.16, SnRK3.16,OsCIPK26, OsSnRK3.8, SnRK3.8,OsPK7, OsPK07, OsCIPK12, CIPK12, OsSnRK3.6, SnRK3.6,OsCBL9,OsCIPK01, CIPK1, OsCIPK1, OsSnRK3.3, SnRK3.3,OsCIPK05, CIPK5, OsCIPK5, OsSTA7, OsSnRK3.2, SnRK3.2,OsCIPK09, CIPK9, OsCIPK9, OsSnRK3.10, SnRK3.10,OsCIPK20, OsSnRK3.15, SnRK3.15,OsCIPK22, OsSnRK3.17, SnRK3.17,OsCIPK19, OsPK4, OsPK04, Os-CIPK19, CIPK19, OsSnRK3.20, SnRK3.20,OsCBL5,OsCIPK08, CIPK8, OsCIPK8, OsSnRK3.4, SnRK3.4,OsCIPK30, OsSnRK3.5, SnRK3.5,OsCBL1, Os-CBL1,OsCBL8,OsCIPK02, CIPK2, OsCIPK2, OsSnRK3.26, SnRK3.26,OsCBL2,OsCBL7,OsCBL6,OsCIPK23, Os-CIPK23, OsSnRK3.23, SnRK3.23,OsCIPK11, OsMSURPK2, MSURPK2, OsSnRK3.7, SnRK3.7,OsCIPK25, OsSnRK3.21, SnRK3.21,CIPK24, OsCIPK24, OsSOS2, OsSnRK3.22, SnRK3.22,OsCBL3
37383	22253446	Hashimoto K., Eckert C., Uta Ansch??tz, Scholz M., Held K., Waadt R., Reyer A., Hippler M., Becker D., J?rg Kudla	Phosphorylation of calcineurin B-like (CBL) calcium sensor proteins by their CBL-interacting protein kinases (CIPKs) is required for full activity of CBL-CIPK complexes toward their target proteins.	J. Biol. Chem.	287(11)	7956-68	2012	CBL10,CBL6,CBL9,CBL8,CIPK01,SOS2,CBL3,CIPK23,CBL1,CBL5,SOS3,CBL7,CBL2	OsCBL10,OsCBL6,OsCBL9,OsCBL8,OsCIPK01, CIPK1, OsCIPK1, OsSnRK3.3, SnRK3.3,CIPK24, OsCIPK24, OsSOS2, OsSnRK3.22, SnRK3.22,OsCBL3,OsCIPK23, Os-CIPK23, OsSnRK3.23, SnRK3.23,OsCBL1, Os-CBL1,OsCBL5,CBL4, OsCBL4, OsSOS3,OsCBL7,OsCBL2
37384	11909851	Koeduka T., Matsui K., Akakabe Y., Kajiwara T.	Catalytic properties of rice alpha-oxygenase. A comparison with mammalian prostaglandin H synthases.	J. Biol. Chem.	277(25)	22648-55	2002	PIOX	OsPIOX, RalphaO, alpha-DOX, OsDOX, DOX, alpha-DOX2, Osalpha-DOX2
37385	16582486	Lloyd T., Krol A., Campanaro D., Malkowski M.	Purification, crystallization and preliminary X-ray diffraction analysis of pathogen-inducible oxygenase (PIOX) from Oryza sativa.	Acta Crystallogr. Sect. F Struct. Biol. Cryst. Commun.	62(Pt 4)	365-7	2006	PIOX	OsPIOX, RalphaO, alpha-DOX, OsDOX, DOX, alpha-DOX2, Osalpha-DOX2
37386	15069599	Liu P., Zhu J., Lu Y.	Marker-assisted selection in segregating generations of self-fertilizing crops.	Theor. Appl. Genet.	109(2)	370-6	2004		
37387	0	Suzuki M., Bashir K., Inoue H., Takahashi M., Nakanishi H., Nishizawa N.K.	Accumulation of starch in Zn-deficient rice	Rice (N Y)	5	9	2012	ZIP10,NAS2,ZIP4,ZIP5,NAAT4,ZIP7,HMA1,ZIP6,RNS1,NAS3,ZIP3,ZIP8,RNS2,ZIP2,RNS3,_,RNS5,RNS6,ZIP1,NAS1,RNS4,IRT1	OsZIP10,OsNAS2, OsNAS1,OsZIP4,OsZIP5, OsZIP8, ZIP8, OsZIP9,OsNAAT4, OsNAAT1 ,OsZIP7,OsHMA1, osHMA1,OsZIP6,OsRNS1,OsNAS3,OsZIP3,OsZIP8, OsZIP1, ZIP1, OsZIP13, ZIP13,OsRNS2,OsZIP2, OsZIP11, ZIP11 ,OsRNS3, OsRNasePD2, RNasePD2,OsZIP9, ZIP9,OsRNS5,OsRNS6,OsZIP1,OsNAS1,OsRNS4, OsRRP, RNaseDIS,OsIRT1, ZIP10, OsZIP10, OsZIP12, ZIP12
37388	19756234	Singla B., Jitendra P Khurana, Khurana P.	Structural characterization and expression analysis of the SERK/SERL gene family in rice (Oryza sativa).	Int J Plant Genomics	2009	539402	2009	SERL8,SERL7,SERL3,TMS10,SERL5,SERL1,DOCS1,SERL2,_,SG2,SERK1	OsSERL8, OsBAK1-6, BAK1-6, TMS10L,OsWD40-138, OsSERL7,  OsDWD29, DWD29,OsSERL3,OsSERK4, OsSERL9, OsSERK2, OsBAK1-5, OsTMS10, SERK4, SERL9, SERK2, BAK1-5, OsBAK1, BAK1,OsSERL5, OsBAK1-4, OsSERK1, BAK1-4, SERK1,OsSERL1, OsBAK1-8, BAK1-8,OsSERL4, OsBAK1-9, Docs1, OsDOCS1,OsSERL2, SERK1, OsBAK1-7, BAK1-7,OsSERK3, OsSERL6, OsBI-SERK1, BI-SERK1, OsBAK1-3,OsSERK1, SERK1, OsBAK1, BAK1, OsSERK1/OsBAK1, OsBISERK1, BISERK1, OsSerk1, OsBAK1-1, 08SG2/OsBAK1, 08SG2, OsSG2,OsSERK1, OsSERK2, OsBiSERK1, SERK2, BiSERK1, OsSerk2, OsBAK1-2
37389	19754838	Li D., Wang L., Wang M., Yun-Yuan Xu, Luo W., Ya-Ju Liu, Zhi-Hong Xu, Li J., Chong K.	Engineering OsBAK1 gene as a molecular tool to improve rice architecture for high yield.	Plant Biotechnol. J.	7(8)	791-806	2009	D61,SG2,BZR1,TMS10,D2,SERK1,_	d61*, dwf42, d61, OsBRI1, OSBRI1, BRI1, Os BRI1, Osbri1, OsBRKq1, BRKq1,OsSERK1, SERK1, OsBAK1, BAK1, OsSERK1/OsBAK1, OsBISERK1, BISERK1, OsSerk1, OsBAK1-1, 08SG2/OsBAK1, 08SG2, OsSG2,OsBZR1, Os BZR1, OsBES1-6, BES1-6,OsSERK4, OsSERL9, OsSERK2, OsBAK1-5, OsTMS10, SERK4, SERL9, SERK2, BAK1-5, OsBAK1, BAK1,d2, dwf2, CYP90D2, D2/CYP90D2, OsD2, SMG11, OsSMG11, D2/SMG11, OsD2a, OsD2b,OsSERK1, OsSERK2, OsBiSERK1, SERK2, BiSERK1, OsSerk2, OsBAK1-2,OsSERK3, OsSERL6, OsBI-SERK1, BI-SERK1, OsBAK1-3
37390	20128878	Ishimaru Y., Masuda H., Bashir K., Inoue H., Tsukamoto T., Takahashi M., Nakanishi H., Aoki N., Hirose T., Ohsugi R., Naoko K Nishizawa	Rice metal-nicotianamine transporter, OsYSL2, is required for the long-distance transport of iron and manganese.	Plant J.	62(3)	379-90	2010	IRT1,NAS2,YSL15,YSL2,_,NRAMP1,NAS1	OsIRT1, ZIP10, OsZIP10, OsZIP12, ZIP12,OsNAS2, OsNAS1,OsYSL15, OsYs7,OsYSL2, Os-YSL2, OsYs6 ,OsSAMS3, OsSAMS1, SAMS3, SAMS1, SAM2, SAM1,OsNramp1, OsNRAMP1, OsNramp6,OsNAS1
37391	21047815	Umezu N., Umeki N., Mitsui T., Kondo K., Maruta S.	Characterization of a novel rice kinesin O12 with a calponin homology domain.	J. Biochem.	149(1)	91-101	2011	_	OsKCH1, KCH1, OsKCH, KCH, O12
37392	11448759	V Lira-Ruan, G Sarath, R V. Klucas, R Arredondo-Peter	Synthesis of hemoglobins in rice (Oryza sativa var. Jackson) plants growing in normal and stress conditions.	Plant Sci.	161(2)	279-287	2001	Hb1,Hb2	HB1, OsHB1, GLB1A, rHb1, ORYsa GLB1a, nsHb1, OsNSHB1, hb1, nsHb, OsPgb1.1, Pgb1.1,HB2, OsHB2, OsNSHB2, hb2, GLB1b, ORYsa GLB1b, OsPgb1.2, Pgb1.2
37393	20376671	Li W., Wu J., Weng S., Zhang D., Zhang Y., Shi C.	Characterization and fine mapping of the glabrous leaf and hull mutants (gl1) in rice (Oryza sativa L.).	Plant Cell Rep.	29(6)	617-27	2010	GL1	gl1, NUDA/GL-1, NUDA/GL1, NUDA, GL-1, OsWOX3B, OsWOX2, OsWOX3, Os WOX3, WOX3B, WOX2, WOX3, LSY1, OsLSY1, DEP, OsDEP
37394	20490919	Yi N., Oh S.J., Kim Y.S., Jang H.J., Park S.H., Jeong J.S., Song S.I., Choi Y.D., Kim J.K.	Analysis of the Wsi18, a stress-inducible promoter that is active in the whole grain of transgenic rice	Transgenic Res.	20	153-163	2011	WSI18	OsLEA14, OsLEA14a, OsLEA14b, wsi18, pwsi18, OsWsi18, OsLEA14/WSI18
37395	0	Zhu X., Yang Q., Yang J., Lei C., Wang J., Ling Z.	Differentiation ability of monogenic lines to Magnaporthe grisea in indica rice.	Acta Phytopathol Sin.	34	361-368	2004	PI27	Pi27, Pi27(t), Pi-27(t)
37396	23741473	Zhou L., Ni E., Yang J., Zhou H., Liang H., Li J., Jiang D., Wang Z., Liu Z., Zhuang C.	Rice OsGL1-6 Is Involved in Leaf Cuticular Wax Accumulation and Drought Resistance.	PLoS ONE	8(5)	e65139	2013	GL1-6	Os0053, OsGL1-6
37397	0	Mi-Ok Lee, PU-Gyu ChoP, Jung-A Kim, Young-Ho Jung, Seung-Hee Jung, So Hee Kim, Jin-Won Kim, Sang-Kyu Lee, Jong-Seong Jeon, Randeep R., Ganesh Kumar Agrawal, Nam-Soo Jwa	Two Novel Protein Kinase Genes, OsMSRPK1 and OsMSURPK2, Are Regulated by Diverse Environmental Stresses in Rice	Journal of Plant Biology	49(3)	247-256	2006	CIPK11,MSRPK1	OsCIPK11, OsMSURPK2, MSURPK2, OsSnRK3.7, SnRK3.7,OsMSRPK1, Orysa;CDKG;1, OsCDKG;1, CDKG;1, CDKG-2, OsCDKG-2
37398	0	Tsuda K., Ito Y., Yamaki S., Miyao A., Hirochika H., Kurata N.	Isolation and mapping of three rice mutants that showed ectopic expression of KNOX genes in leaves	Plant Science	177	131-135	2009	OSKN2,OSH43,ONI3,ONI2,ONI1,OSH6,OSH15,OSH1	OsKn2, OsH71, HOS9, OSH71, OSH71/Oskn2,OsH43, H43,OsONI3,OsONI2, OsCUT9, CUT9, OsKCS20, KCS20,OsONI1, FDH, OsCUT4, CUT4, OsKCS7, KCS7,OsH6, HOS16,OSH15, OsH15, OSKN3, Oskn3, HOS3, D6, d6, OSH15/Oskn3, HB253, H15, OsKNOX3, KNOX3,OSKN1, Oskn1, OsKN1, OSH1/Oskn1, HB75
37399	0	Ganesh Kumar Agrawal, Rakwal R., Nam-Soo Jwa	Differential induction of three pathogenesis-related genes, PR10, PR1b and PR5 by the ethylene generator ethephon under light and dark in rice (Oryza sativa L.) seedlings	J. Plant Physiol.	158	133-137	2001	PR10A,PR5,PR1B	PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsPR5, Pir2, PR-5, PR5-1,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1, OsPR1a, PR1a
37400	10707360	Hassa P., Jos? Granado, Freydl E., Urs W?spi, Dudler R.	Syringolin-Mediated Activation of the Pir7b Esterase Gene in Rice Cells Is Suppressed by Phosphatase Inhibitors	MPMI	13	342-346	1999	PIR7B	Pir7b
37401	0	Wakuta S., Hamada S., Ito H., Imai R., Mori H., Matsuura H., Nabeta K., Matsui H.	Comparison of Enzymatic Properties and Gene Expression Profiles of Two Tuberonic Acid Glucoside beta-Glucosidases from Oryza sativa L.	J. Appl. Glycosci	58	67-70	2011	BGLU13,BGLU12	OsTAGG1, TAGG1, Os4BGlu13, 4BGlu13,Os4bglu12, Os4BGlu12, 4BGlu12, OsTAGG2, TAGG2
37402	0	Opassiri R., James R. Ketudat Cairns, Akiyama T., Onnop Wara-Aswapati, Svasti J., Esen A.	Characterization of a rice beta-glucosidase highly expressed in flower and germinating shoot	Plant Science	165(3)	627-638	2003	BGLU30,BGLU7	Os9bglu30, OsBGlu30, bglu 2, bglu2, BGlu2,Os3bglu7, Os3BGlu7, 3BGLU7, BGlu7, BGlu1, bglu1
37403	16506311	J?r?me Crouzet, Trombik T., A Staffan Fraysse, Boutry M.	Organization and function of the plant pleiotropic drug resistance ABC transporter family.	FEBS Lett.	580(4)	1123-30	2006	PDR3,PDR21,PDR7,PDR15,PDR5,PDR16,PDR17,PDR19,PDR23,PDR12,PDR14,PDR6,PDR2,PDR22,PDR11,PDR10,PDR8,PDR1,PDR4	OsABCG48, OsPDR3,OsABCG46, OsPDR21,OsABCG39, OsPDR7,OsABCG38, OsPDR15,ABCG43, OsABCG43, ABCG43/PDR5, OsPDR5,OsABCG32, OsPDR16,OsABCG44, OsPDR17,OsABCG47, OsPDR19,OsABCG50, OsPDR23, OsABCG50_1, OsABCG50_2,OsABCG42, ABCG42, OsPDR12, OsABCG42_1, OsABCG42_2,OsABCG33, OsPDR14,OsPDR6, OsABCG31, OsABCG31_1,ABCG41, OsABCG41, OsPDR2, OsABCG41_1, OsABCG41_2,OsABCG49, OsPDR22, OsABCG49_1, OsABCG49_2,OsABCG35, OsPDR11, OsPDR2,OsABCG34, OsPDR10, OsPDR1,OsPDR8, PDR4, P0410E03.16, OsABCG37, OsPDR4,OsABCG45, OsPDR1, FCO1, OsPDR1.2, OsPDR1.3, OsPDR1.1,OsABCG40, ABCG40, OsPDR4
37404	16375897	Klein M., Burla B., Martinoia E.	The multidrug resistance-associated protein (MRP/ABCC) subfamily of ATP-binding cassette transporters in plants.	FEBS Lett.	580(4)	1112-22	2006	MRP7,MRP13,MRP5,MRP10,MRP8,MRP14,MRP12,MRP2,MRP16,MRP17,MRP11,MRP3,MRP15,MRP6,MRP4,MRP9,MRP1	OsABCC7, OsMRP7,OsABCC13, OsMRP13, OsMRP5,OsABCC5, OsMRP5, AB3C_Ath ,OsABCC10, OsMRP10,OsABCC8, OsMRP8a, OsMRP8a, OsMRP8,OsABCC14, OsMRP14, OsABCC14-1, OsABCC14-2,OsABCC12, OsMRP12,OsABCC2, OsMRP2,OsABCC16, OsMRP16,OsABCC17, OsMRP17,OsABCC11, ABCC11, OsMRP11, OsABCC8,OsABCC3, ABCC3, OsMRP3,OsABCC15, OsMRP15,OsABCC6, OsMRP6,OsABCC4, ABCC4, OsMRP4,OsABCC9, ABCC9, OsMRP9, OsABCC14, ABCC14 ,OsABCC1, ABCC1, OsABCC1-1, OsABCC1-2, OsMRP1
37405	21901091	Du P., Wu J., Zhang J., Zhao S., Zheng H., Gao G., Wei L., Li Y.	Viral infection induces expression of novel phased microRNAs from conserved cellular microRNA precursors.	PLoS Pathog.	7(8)	e1002176	2011	MIR156J,MIR1432	miR156j, OsmiR156j, osmiR156j, osa-miR156j, osa-MIR156josa-miR156j-3p osa-miR156j-5p,miR1432, osa-miR1432, osa-miR1432-5p, osa-MIR1432
37406	15805478	Sunkar R., Girke T., Pradeep Kumar Jain, Jian-Kang Zhu	Cloning and characterization of microRNAs from rice.	Plant Cell	17(5)	1397-411	2005	MIR396E	miR396e, osa-miR396e, osa-MIR396eosa-miR396e-3p osa-miR396e-5p
37407	18312648	Sunkar R., Zhou X., Zheng Y., Zhang W., Jian-Kang Zhu	Identification of novel and candidate miRNAs in rice by high throughput sequencing.	BMC Plant Biol.	8	25	2008	MIR1427,MIR810B	miR1427, osa-miR1427, osa-MIR1427,miR810b, osa-miR810b, osa-MIR810b, Osa-miR810b.2, miR810-3p, osa-miR810b.1, osa-miR810b.2
37408	21791435	Peng T., Lv Q., Zhang J., Li J., Du Y., Zhao Q.	Differential expression of the microRNAs in superior and inferior spikelets in rice (Oryza sativa).	J. Exp. Bot.	62(14)	4943-54	2011	MIR5337,MIR5338,MIR5339,MIR5340,MIR2871A	miR5337, osa-miR5337, osa-MIR5337, osa-MIR5337a,miR5338, osa-miR5338, osa-MIR5338,miR5339, osa-miR5339, osa-MIR5339,miR5340, osa-miR5340, osa-MIR5340,miR2871a, osa-miR2871a, osa-MIR2871a, MIR2871a-5posa-miR2871a-3p osa-miR2871a-5p
37409	19951405	Merchan F., Boualem A., Crespi M., Frugier F.	Plant polycistronic precursors containing non-homologous microRNAs target transcripts encoding functionally related proteins.	Genome Biol.	10(12)	R136	2009	MIR395X,MIR395Y	miR395x, osa-miR395x, osa-MIR395x,miR395y, osa-miR395y, osa-MIR395y
37410	21352554	Schreiber A.W., Shi B.J., Huang C.Y., Langridge P., Baumann U.	Discovery of barley miRNAs through deep sequencing of short reads	BMC Genomics	12	-	2011	MIR5078,MIR5075,MIR5080,MIR5072,MIR5073,MIR5074,MIR5076,MIR5077,MIR5081,MIR5082,MIR5083,MIR5071,MIR5079	miR5078, osa-miR5078, osa-MIR5078,miR5075, osa-miR5075, osa-MIR5075,miR5080, osa-miR5080, osa-MIR5080,miR5072, osa-miR5072, osa-MIR5072,miR5073, osa-miR5073, osa-MIR5073,miR5074, osa-miR5074, osa-MIR5074,miR5076, osa-miR5076, osa-MIR5076,miR5077, osa-miR5077, osa-MIR5077,miR5081, osa-miR5081, osa-MIR5081,miR5082, osa-miR5082, osa-MIR5082,miR5083, osa-miR5083, osa-MIR5083,miR5071, osa-miR5071, osa-MIR5071,miR5079, osa-miR5079, osa-MIR5079, osa-MIR5079a
37411	0	Zhan X.Y., Wu H.M., Wang H., Cheung A.Y.	Characterization of a rice pollen-specific gene and its expression.	Am. J. Bot.	81(5)	552?561	1994	_	PS1
37412	0	Zhang J., Li X., Jiang G., Xu Y., He Y.	Pyramiding of Xa7 and Xa21 for the improvement of disease resistance to bacterial blight in hybrid rice	Plant Breeding	125(6)	600-605	2006	XA7,XA21	Xa7,Xa21*, Xa21, OsXA21
37413	0	Xu J., Jiang J., Dong X., Ali J., Mou T.	Introgression of bacterial blight (BB) resistance genes Xa7 and Xa21 into popular restorer line and their hybrids by molecular marker-assisted backcross (MABC) selection scheme	Afr. J. Biotechnol.	11(33)	8225-8233	2012	XA7,XA21	Xa7,Xa21*, Xa21, OsXA21
37414	0	Roso A.C., Merotto Jr A., Delatorre C.A., Menezes V.G.	Regional scale distribution of imidazolinone herbicide-resistant alleles in red rice (Oryza sativa L.) determined through SNP markers	Field Crops Res	119(1)	175-182	2010	ALS	OsALS, AHAS, OsALS1, ALS1
37415	16784536	Colasanti J., Tremblay R., Ada Y M Wong, Coneva V., Kozaki A., Barbara K Mable	The maize INDETERMINATE1 flowering time regulator defines a highly conserved zinc finger protein family in higher plants.	BMC Genomics	7	158	2006	_,IDD1,EHD2/RID1,IDD6,IDD13,IDD3,IDD5,IDD7,IDD8,IDD9,IDD11,IDD12,IDD2,NKD,LPA1	OsIDD4,OsIDD1,Ehd2, RID1, OsID1, ID1, OsId1, OsID, Ehd2/RID1/OsId1, RID1/OsID1/Ehd2,OsIDD6,OsIDD13,OsIDD3,OsIDD5,OsIDD7,OsIDD8,OsIDD9,OsIDD11,OsIDD12, DLN211, OsDLN211,OsIDD2, ZOS1-04, OsZOS1-04,IDD10, OsIDD10, OsNKD, OsZOS4-11, ZOS4-11,OsIDD14, LPA1, IDD14, OsLPA1, ZOS1-06, OsZOS1-06
37416	16669754	Matthew W. Jones-Rhoades, David P. Bartel, Bartel B.	MicroRNAs and Their Regulatory Roles in Plants	Annu. Rev. Plant Biol.	57	19-53	2006	MIR164B,MIR164A	miR164b, osa-miR164b,miR164a, osa-miR164a
37417	19081140	Si Qi Huang, Peng J., Cheng Xiang Qiu, Zhi Min Yang	Heavy metal-regulated new microRNAs from rice.	J. Inorg. Biochem.	103(2)	282-7	2009	MIR605I,MIR605F,MIR605A,MIR605E,MIR601,MIR602A,MIR602B,MIR602C,MIR603,MIR604A,MIR604B,MIR604C,MIR605B,MIR605C,MIR605D,MIR605G,MIR605H,MIR605J,MIR606	miR605i, osa-miR605i, osa-MIR605i, Osa-miR605i,miR605f, osa-miR605f, osa-MIR605f, Osa-miR605f,miR605a, osa-miR605a, osa-MIR605a, Osa-miR605a,miR605e, osa-miR605e, osa-MIR605e, Osa-miR605e,miR601, osa-miR601, osa-MIR601, Osa-miR601,miR602a, osa-miR602a, osa-MIR602a, Osa-miR602a,miR602b, osa-miR602b, osa-MIR602b, Osa-miR602b,miR602c, osa-miR602c, osa-MIR602c, Osa-miR602c,miR603, osa-miR603, osa-MIR603, Osa-miR603,miR604a, osa-miR604a, osa-MIR604a, Osa-miR604a,miR604b, osa-miR604b, osa-MIR604b, Osa-miR604b,miR604c, osa-miR604c, osa-MIR604c, Osa-miR604c,miR605b, osa-miR605b, osa-MIR605b, Osa-miR605b,miR605c, osa-miR605c, osa-MIR605c, Osa-miR605c,miR605d, osa-miR605d, osa-MIR605d, Osa-miR605d,miR605g, osa-miR605g, osa-MIR605g, Osa-miR605g,miR605h, osa-miR605h, osa-MIR605h, Osa-miR605h,miR605j, osa-miR605j, osa-MIR605j, Osa-miR605j,miR606, osa-miR606, osa-MIR606, Osa-miR606
37418	0	S. A. K. Sama V., Himabindu K., M. Sundaram R., C. Viraktamath B., S. Bentur J.	Mapping of a rice gall midge resistance gene, gm3, in RP 2068-18-3-5 and in silico identification of candidate gene(s)	RGN	25	76-77	2010	GM3	gm3*, gm3
37419	0	Himabindu K., SUNEETHA K., S. A. K. Sama V., CHERALU C., R. M. RAO P., S. Bentur J.	A new gene for gall midge resistance in rice variety MR1523	RGN	25	73-75	2010	GM11	Gm11t, Gm11(t), Gm11
37420	0	Vijay Kumar LINGARAJ, Akshay Kumar CHAKRAVARTHY, Thyagaraj Nandipura EREGOWDA	Detection of Asian rice gall midge (Orseolia oryzae) biotype 1 in the new locations of Karnataka, South India	Bull. Insectology	61(2)	277-281	2008	GM1	Gm1, Gm-1, GM-1
37421	0	LU Jia-shi, HE Long-fei, XU Jing, XU Chun-yan, LI Chuang-zhen, WEI Su-mei, SU Jian-mu	Identification and Genetic Analysis of gall midge resistance in Rice Germplasm 91-1A2	Rice Science	20(1)	73-78	2013	GM3,GM5,GM6,GM4,GM1,GM2	gm3*, gm3,Gm5*, Gm5,Gm6(t), Gm6,Gm4(t)*, Gm4(t), Gm4, Gm4t,Gm1, Gm-1, GM-1,Gm2, Gm-2, GM-2
37422	0	Yasala A.K., Rawat N., Kumar Sama V.S.A., Kudapa H.B., Sundaram R.M., Bentur J.S.	In silico analysis for gene content in rice genomic regions mapped for the gall midge resistance genes	Plant OMICS	5	405-413	2012	GM1,GM8,GM3,GM4,GM6,GM7,GM11,GM2	Gm1, Gm-1, GM-1,Gm8(t), Gm8,gm3*, gm3,Gm4(t)*, Gm4(t), Gm4, Gm4t,Gm6(t), Gm6,Gm7*, Gm7,Gm11t, Gm11(t), Gm11,Gm2, Gm-2, GM-2
37423	0	Sundaram R.M.	Fine mapping of rice gall midge resistance genes Gm1 and Gm2 and validation of the linked markers.	PhD thesis, University of Hyderabad, India			2007	GM1,GM2	Gm1, Gm-1, GM-1,Gm2, Gm-2, GM-2
37424	0	Tiwari S., S. Bentur J., Mishra B., Aravind Kumar A., Kole C.	Reaction of gene differential rice varieties against gall midge Orseolia oryzae (Wood-Mason) biotypes in the greenhouse	Indian J. Genet.	65(4)	313-314	2005	GM6,GM3,GM2,GM8,GM1,GM4,GM5,GM7,GM9,GM10	Gm6(t), Gm6,gm3*, gm3,Gm2, Gm-2, GM-2,Gm8(t), Gm8,Gm1, Gm-1, GM-1,Gm4(t)*, Gm4(t), Gm4, Gm4t,Gm5*, Gm5,Gm7*, Gm7,Gm9, Gm9(t),Gm10, Gm10(t)
37425	0	Dubey M., Chandel G.	In silico survey and characterization of Resistance Gene Analogues (RGAs) in the genomic regions encompassing gall midge resistance genes Gm4 and Gm5 in rice (Oryza sativa L.)	Plant Omics Journal	3(5)	140-148	2010	GM4,GM5	Gm4(t)*, Gm4(t), Gm4, Gm4t,Gm5*, Gm5
37426	0	Mishra R., Sarawgi A.K., Shrivastiva M.N., Rastogi N.K.	Mode of inheritance and allelic relationships of gene(s) governing resistance to gall midge (Orseolia oryzae Wood Mason) in some rice cultivars	Tropical Agricultural Research and Extension	2(1)	13-16	1999	GM2,GM1	Gm2, Gm-2, GM-2,Gm1, Gm-1, GM-1
37427	0	Mishra R., Shrivastava M.N., Sarawgi A.K., Bose P.	STUDIES ON INHERITANCE AND ALLELIC RELATIONSHIP OF GENE (S) GOVERNING RESISTANCE TO GALL MIDGE (ORSOOLIA ORYZAEWOOD MASON) IN SOME DONORS OF RICE	Indian J. of Agric. Res.	34(4)	251-254	2000	GM2,GM1	Gm2, Gm-2, GM-2,Gm1, Gm-1, GM-1
37428	0	J S BENTUR, P VIJAYA LAKSHMI, VSAK SAMA, CH PADMAVATHY, K HIMABINDU	Sources of resistance to the new 4M biotype of rice gall midge (Orseolia oryzae)	Indian Journal of Agricultural Sciences	79(10)	844-846	2009	GM1,GM2	Gm1, Gm-1, GM-1,Gm2, Gm-2, GM-2
37429	0	Kumar A., Shrivastava M.N., Sahu R.K., Shukla B.C., Shrivastava S.K.	Inheritance and allelic relationships of rice gall midge resistance genes in some new donors	Advances in rice genetics. Supplement to Rice genetics IV. Proceedings of the Fourth International Rice Genetics Symposium, 2000, IRRI, Los Ba?os, Philippines.		51-54	2003	GM2,GM1,GM3,GM4,GM5,GM6,GM7	Gm2, Gm-2, GM-2,Gm1, Gm-1, GM-1,gm3*, gm3,Gm4(t)*, Gm4(t), Gm4, Gm4t,Gm5*, Gm5,Gm6(t), Gm6,Gm7*, Gm7
37430	0	Datta K., Velazhahan R., Oliva N., Ona I., Mew T., S. Khush G., Muthukrishnan S., K. Datta S.	Over-expression of the cloned rice thaumatin-like protein (PR-5) gene in transgenic rice plants enhances environmental friendly resistance to Rhizoctonia solani causing sheath blight disease	Theor. Appl. Genet.	98	1138-1145	1999	PR5	OsPR5, Pir2, PR-5, PR5-1
37431	12468735	Kagaya Y., Hobo T., Murata M., Ban A., Hattori T.	Abscisic acid-induced transcription is mediated by phosphorylation of an abscisic acid response element binding factor, TRAB1.	Plant Cell	14(12)	3177-89	2002	TRAB1	OsbZIP66, OsABF5, Osbzip66, OsTRAB1, bZIP66, ABF5
37432	19399245	Rakwal R., Ganesh Kumar Agrawal, Shibato J., Imanaka T., Fukutani S., Tamogami S., Endo S., Sarata Kumar Sahoo, Masuo Y., Kimura S.	Ultra low-dose radiation: stress responses and impacts using rice as a grass model.	Int J Mol Sci	10(3)	1215-25	2009	PR10A,PR5,CHS,POX22.3,APX1,PAL1,PR1B,APX2,_	PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsPR5, Pir2, PR-5, PR5-1,CHS*, Oschs, chs, chas, OsCHS, OsCHS1, CHS1, OsPKS26, PKS26, OsCHS24, CHS24, OsCHS27, CHS27,POX22.3, OSPER, OsPOX, POX, Pir3, prx111, POX22, OsPOX1, POX1, OsPOX22.3, OsPR9, PR9,OsAPX1, APXa, OsAPXa, OsAPx01, OsAPx1, OSAPX1, APx1, cAPX, APX2, cAPXa, OscAPXa,OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1, OsPR1a, PR1a,OsAPX2, OsAPx02, APXb, OsAPx2, OSAPX2, APx2, cAPX, OsAPX1, APX1,OsCatC, CatC, OsCAT, OsCAT1, CAT1
37433	22514699	He H., Su J., Shu S., Zhang Y., Ao Y., Liu B., Feng D., Wang J., Wang H.	Two homologous putative protein tyrosine phosphatases, OsPFA-DSP2 and AtPFA-DSP4, negatively regulate the pathogen response in transgenic plants.	PLoS ONE	7(4)	e34995	2012	_,PR5,PR1A	OsPFA-DSP2, OsPP39,OsPR5, Pir2, PR-5, PR5-1,OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1, OsPR1b, PR1alpha, OsPR1alpha
37434	12805592	Baxter I., Tchieu J., Michael R Sussman, Boutry M., Michael G Palmgren, Gribskov M., Jeffrey F Harper, Kristian B Axelsen	Genomic comparison of P-type ATPase ion pumps in Arabidopsis and rice.	Plant Physiol.	132(2)	618-28	2003	AHA1,ECA1,ALA9,HMA9,HMA8,ACA6,HMA1,AHA2,HMA2,ACA3,HMA7,ECA2,AHA6,ACA10,ALA1,ALA3,ALA5,ALA7,P5,AHA10,AHA9,ALA2,ALA4,ALA6,ALA10,ALA8,ACA8,AHA4,HMA4,ACA4,ACA5,AHA5,ACA2,ACA11,ACA1,AHA3,AHA8,ACA9,ACA7,LMPA,HMA5,GCC7,HMA6	OSA1, OsA1, osAHA1, AHA1,osECA1, OsECA1,osALA9,OsHMA9 ,oshma9-1, oshma9-2, HMA9, OsHMP33, HMP33,OsHMA6, osHMA8, HMA6, OsHMP20, HMP20,osACA6, OsACA1, OsACA6, OsPM1ATPaseII, ACA3,OsHMA1, osHMA1,OSA2, OsA2, osAHA2, AHA2, OsPMA2,OsHMA2, osHMA2, OsHMA2v ,osACA3, OsACA4, OsPM3ATPB,osHMA7, osHMA7,osECA2,OSA6, OsA6, osAHA6, AHA6,osACA10,osALA1,osALA3,osALA5,osALA7,osP5,OSA10, OsA10, osAHA10, AHA10,OSA9, OsA9, osAHA9, AHA9,osALA2,osALA4,osALA6,osALA10,osALA8,osACA8, OsACA7, ACA13,OSA4, OsA4, osAHA4, AHA4,OsHMA7, osHMA4, HMA7, OsHMP12, HMP12,osACA4, OsACA8, ACA8, OsACA4,osACA5, OsACA9, ACA9, OsACA5, OsPM12ATP4, PM12ATP4,OSA5, OsA5, osAHA5, AHA5,osACA2, OsACA10, OsPM12ATP,osACA11, OsACA6, OsACA5, OsPM4ATP8,osACA1, OsACA1, OsACA3, OsPM3ATP2,OSA3, OsA3, osAHA3, AHA3, PAM3,OSA8, OsA8, A8, osAHA8, AHA8, Os-HA1, OsHA1,osACA9, OsACA2, ACA2, OsPM2ATP9,osACA7, OsACA6, ACA6, OsACA7, OsPM5ATP4, PM5ATP4 ,OSA7, OsA7, osAHA7, AHA7, PAA-Hwa, OsLMPA,OsHMA8, osHMA5, HMA8, OsHMP27, HMP27,HMA3, OsHMA3, OsHMA3a, OsHMA3n, osHMA3, OsHMP34, HMP34,OsHMA5, osHMA6, HMA5, OsHMP11, HMP11
37435	9076986	M Sauter	Differential expression of a CAK (cdc2-activating kinase)-like protein kinase, cyclins and cdc2 genes from rice during the cell cycle and in response to gibberellin.	Plant J.	11(2)	181-90	1997	CYCB2;1,CDC2-2,CYCB2;2,CDC2-1	cycB2;1 (=cycOs1), cycB2;1, cycOs1, CycB2;1, CycOs1, CYCB2-1, CYCOS1, CycB2-Os1, CYCB2, CycB2;os;1, Orysa;CycB2;1, CycB2;os;1, OsCycB2;1,cdc2Os-2, CDC2Os-2, CDKA-2, CDKA;2, Orysa;CDKA;2, Rcdc2-2, OsCDKA;2, OsCDKA2, CDKA2, CDKA;1, OsCDKA;1, CDC20S-2, OsCDC20S-2,cycB2;2 (=cycOs2), cycB2;2, cycOs2, CycB2;2, CycOs2, CYCB2-2, CYCOS2, CycB2-Os2, CYCB2, CycB2;os;2, OsCycB2;2, Orysa;CycB2;2, OsCYCOS2, Os;cycB2;2, CYCB2.2, OsCYCB2.2,cdc2Os-1, CDC2Os-1, CDKA-1, CDKA;1, Orysa;CDKA;1, OsCDKA;1, cdc2Os1, Rcdc2-1, OsCDKA1, CDKA1, CDC20S-1, OsCDC20S-1 
37436	11826308	Tanja Fabian-Marwedel, Umeda M., Sauter M.	The rice cyclin-dependent kinase-activating kinase R2 regulates S-phase progression.	Plant Cell	14(1)	197-210	2002	CYCH;1,CDKD;1,CYCB2;2	Os;cycH;1, Orasa;CycH1;1, cycH1, CYCH1 ,CDKD;1, Orysa;CDKD;1, R2, OsR2, CAK R2, CDKD1;3 ,cycB2;2 (=cycOs2), cycB2;2, cycOs2, CycB2;2, CycOs2, CYCB2-2, CYCOS2, CycB2-Os2, CYCB2, CycB2;os;2, OsCycB2;2, Orysa;CycB2;2, OsCYCOS2, Os;cycB2;2, CYCB2.2, OsCYCB2.2
37437	10036778	M Yamaguchi, M Umeda, H Uchimiya	A rice homolog of Cdk7/MO15 phosphorylates both cyclin-dependent protein kinases and the carboxy-terminal domain of RNA polymerase II.	Plant J.	16(5)	613-9	1998	CDKB2;1 ,CDC2-2,CDC2-1,CDKD;1	Orysa;CDKB2;1, OsCDKB2;1, cdc2Os3, Oscdc20s-3, cdc20s-3, Orysa;CDKB;2, CYCB2.1, CDKB-2, OsCDKB-2,cdc2Os-2, CDC2Os-2, CDKA-2, CDKA;2, Orysa;CDKA;2, Rcdc2-2, OsCDKA;2, OsCDKA2, CDKA2, CDKA;1, OsCDKA;1, CDC20S-2, OsCDC20S-2,cdc2Os-1, CDC2Os-1, CDKA-1, CDKA;1, Orysa;CDKA;1, OsCDKA;1, cdc2Os1, Rcdc2-1, OsCDKA1, CDKA1, CDC20S-1, OsCDC20S-1 ,CDKD;1, Orysa;CDKD;1, R2, OsR2, CAK R2, CDKD1;3 
37438	0	Noda T., Hayashi N., Pham Van Du, Hoang Dinh Dinh, Lai Van E	Distribution of pathogenic races of rice blast fungus in Vietnum	Ann. Phytopathol. Soc. Jpn.	65	526-530	1999	PISH	Pi sh, Pish, Pi-sh, Pish(t)
37439	0	Yasuda N., Fujita Y., Noguchi M.	Identification of avirulence genes in the rice blast fungus corresponding to three resistance genes in Japanese differentials	Journal of General Plant Pathology	70(4)	202-206	2004	PIT	Pit, Pit(K59), Pit(Npb), Pi-t, PitNpb, PitK59, Pit1, OsPit1
37440	23800963	Schmidt R., Mieulet D., Hubberten H.M., Obata T., Hoefgen R., Fernie A.R., Fisahn J., San Segundo B., Guiderdoni E., Schippers J.H., Mueller-Roeber B.	SALT-RESPONSIVE ERF1 Regulates Reactive Oxygen Species-Dependent Signaling during the Initial Response to SALT Stress in Rice.	Plant Cell	25(6)	2115-31	2013	MAP3K6,MSRMK2,ERF131,DREB2A,ZFP179	OsMAP3K6, OsMKKK70, MKKK70,OsMSRMK2, OsMAPK5, OsMAP1, OsMPK3, OsBIMK1, OsMAPK2, MPK5, BIMK1, MAPK2, MAPK5, MPK3, OsMPK5, OsMAPK3, OsMAPK5b, MAPK3,OsERF#131, OsERF131, AP2/EREBP#094, AP2/EREBP94, SERF1, OsSERF1,OsDREB2A, OsDREB2a, ERF40, OsERF#040, OsERF040, OsERF40, AP2/EREBP#167, AP2/EREBP167,OsZFP179, DLN27, OsDLN27
37441	23957671	Yang B., Ruan R., Cantu D., Wang X., Ji W., Ronald P.C., Dubcovsky J.	A comparative approach expands the protein-protein interaction node of the immune receptor XA21 in wheat and rice.	Genome	56(6)	315-26	2013	CIPK14,GNS4,SK4,XA21,NGLF	OsCIPK14, OsSnRK3.33, SnRK3.33,OsPR2, PR2, Gns4, OsGns4, OsGLN2,OsSK4, OsSKL1,Xa21*, Xa21, OsXA21,OsARG, ARG, Nglf, Nglf-1, OsAGM, AGM
37442	23769924	Tang S.Q., Shao G.N., Wei X.J., Chen M.L., Sheng Z.H., Luo J., Jiao G.A., Xie L.H., Hu P.S.	QTL mapping of grain weight in rice and the validation of the QTL qTGW3.2.	Gene	527(1)	201-6	2013		
37443	23787154	Xu T., Han J.H., Kang H.	Structural features important for the RNA chaperone activity of zinc finger-containing glycine-rich RNA-binding proteins from wheat (Triticum avestivum) and rice (Oryza sativa).	Phytochemistry	94	28-35	2013	_,_	OsRZ1,OsRZ2
37444	23820081	Wu T., Tang D., Chen W., Huang H., Wang R., Chen Y.	Expression of antimicrobial peptides thanatin(S) in transgenic Arabidopsis enhanced resistance to phytopathogenic fungi and bacteria.	Gene	527(1)	235-42	2013	CHT1	Cht1*(Chi1), Ch16, Cht1, CHT-1, CH16, RC24, OsChia1a, OsChia1, Chi1, Cht1*, Chi-1, Cht-1, Cht1, RCC1, OsCht-1, PR3, OsPR3
37445	23756196	Dhadi S.R., Deshpande A., Driscoll K., Ramakrishna W.	Major cis-regulatory elements for rice bidirectional promoter activity reside in the 5'-untranslated regions.	Gene	526(2)	400-10	2013		
37446	23957676	Ge Z.Y., Wan P.J., Cheng X.F., Zhang Y., Li G.Q., Han Z.J.	Cloning and characterization of serpin-like genes from the striped rice stem borer, Chilo suppressalis.	Genome	56(6)	359-66	2013		
37447	23872535	Yang Y., Zhong J., Ouyang Y.D., Yao J.	The integrative expression and co-expression analysis of the AGO gene family in rice.	Gene	528(2)	221-35	2013	AGO1B,AGO4A,AGO18,AGO2,AGO11,AGO12,AGO13,AGO14,AGO15,AGO16,SHL4,AGO1A,AGO1D,AGO17,AGO3,AGO4B,AGO1C	OsAGO1b, AGO1b, AGO1-2 ,OsAGO4a, AGO4-2,OsAGO18,OsAGO2,OsAGO11,OsAGO12,OsAGO13,OsAGO14,OsAGO15,OsAGO16, OsAGO6, ZP1,shl4, sh4, OsAGO7, SHO2, AGO7, SHL4/SHO2,OsAGO1a, AGO1a, AGO10, AGO1-1 ,OsAGO1d, AGO1d,OsAGO17,OsAGO3,OsAGO4b, AGO4-1 ,OsAGO1c, OsAGO1, AGO1, AGO1c
37448	23839787	Zhai J., Zhao Y., Simon S.A., Huang S., Petsch K., Arikit S., Pillay M., Ji L., Xie M., Cao X., Yu B., Timmermans M., Yang B., Chen X., Meyers B.C.	Plant MicroRNAs Display Differential 3' Truncation and Tailing Modifications That Are ARGONAUTE1 Dependent and Conserved Across Species.	Plant Cell	25(7)	2417-28	2013	MIR166K,MIR166G,MIR166N,_,MIR166L,MIR166E,MIR166A,MIR166C,MIR166D,MIR166B,MIR166H,MIR166F	miR166k, osa-miR166kosa-miR166k-3p osa-miR166k-5p,miR166g, osa-miR166gosa-miR166g-3p osa-miR166g-5p,miR166n, osa-miR166n, osa-MIR166n, miR166j, osa-miR166j, osa-MIR166j, osa-miR166j-3p, osa-miR166j-5p,HEN1, Os-HEN1,miR166l, osa-miR166losa-miR166l-3p osa-miR166l-5p,miR166e, osa-miR166eosa-miR166e-3p osa-miR166e-5p,miR166a, osa-miR166aosa-miR166a-3p osa-miR166a-5p,miR166c, osa-miR166cosa-miR166c-3p osa-miR166c-5p,miR166d, osa-miR166dosa-miR166d-3p osa-miR166d-5p,miR166b, osa-miR166bosa-miR166b-3p osa-miR166b-5p, OsmiR166b,miR166h, osa-miR166hosa-miR166h-3p osa-miR166h-5p,miR166f, osa-miR166f
37449	23836636	Jung D.S., Ryou M.H., Sung Y.J., Park S.B., Choi J.W.	Recycling rice husks for high-capacity lithium battery anodes.	Proc. Natl. Acad. Sci. U.S.A.	110(30)	12229-34	2013		
37450	23644253	Xiong W., Xu X., Zhang L., Wu P., Chen Y., Li M., Jiang H., Wu G.	Genome-wide analysis of the WRKY gene family in physic nut (Jatropha curcas L.).	Gene	524(2)	124-32	2013		
37451	23950527	Normile D.	Vietnam turns back a 'tsunami of pesticides'.	Science	341(6147)	737-8	2013		
37452	23958655	Kim D.Y., Kwon S.I., Choi C., Lee H., Ahn I., Park S.R., Bae S.C., Lee S.C., Hwang D.J.	Expression analysis of rice VQ genes in response to biotic and abiotic stresses.	Gene	529(2)	208-14	2013	VQ13,VQ24,VQ33,VQ10,VQ32,VQ6,VQ1,VQ7,VQ37,VQ25,VQ14,VQ9,VQ2,VQ5,VQ3,VQ4,VQ8,VQ11,VQ16,VQ12,VQ15,VQ17,VQ18,VQ20,VQ22,VQ23,VQ26,VQ27,VQ28,VQ29,VQ35,VQ31,VQ34,VQ19,VQ36,VQ38,VQ39,VQ30,VQ21	OsVQ13,OsVQ24,OsVQ33,OsVQ10,OsVQ32,OsVQ6,OsVQ1,OsVQ7,OsVQ37,OsVQ25,OsVQ14,OsVQ9,OsVQ2,OsVQ5,OsVQ3,OsVQ4,OsVQ8,OsVQ11,OsVQ16,OsVQ12,OsVQ15,OsVQ17,OsVQ18,OsVQ20,OsVQ22,OsVQ23,OsVQ26,OsVQ27,OsVQ28,OsVQ29,OsVQ35,OsVQ31,OsVQ34,OsVQ19,OsVQ36,OsVQ38,OsVQ39,OsVQ30,OsVQ21
37453	23979580	Ikeda K.I., Vu B.V., Kadotani N., Tanaka M., Murata T., Shiina K., Chuma I., Tosa Y., Nakayashiki H.	Is the Fungus Magnaporthe Losing DNA Methylation?	Genetics	195(3)	845-55	2013		
37454	23948082	Nie D.M., Ouyang Y.D., Wang X., Zhou W., Hu C.G., Yao J.	Genome-wide analysis of endosperm-specific genes in rice.	Gene	530(2)	236-47	2013	HAP2I,GLUA1,PRO16.1,GER3,NAC25,OSCA2.5,RISBZ1,BHLH144,TIP3;2,RLCK192,_,_,_,_,_,_,_,C3H10,_,_,_,_,_,_,_,_,_,_,_,HIPP32,_,_,_,PYL/RCAR13,LEA3,NAC26,_,ICL,_,ERF44,PRO10.2,PRO13B.19,_,2R_MYB20,HAP5I,_,_,DEFL2,_,_,_,_,_,_,_,_,_,_,GLUA3,PARP3,CYP71X3,REP1,FIE1,GNK2RLK9,GLUD1,PPLAIIALPHA,_,GLYI10,LEA14,_,LEA32,_,LEA30,CYP71X4,_,_,_,_,CYP71X12,_,_,AMY3A,_,LEA33,_,_,_,_,_,_,TIP3;1,_,_,_,C3H1,GSTF12,_,_,_,_,_,_,_,_,ALAAT5,_,ENODL6,BGAL14,_,HSP70,OLE16,FLZ23,LEA1B,FLOC1,GLUC,PUB77,_,PFK9,CSLA12,CDP3.1 ,PME20,GELP78,_,HAP3K,_,GLB1,BT1-1,RPBF,PRO13A.2,HAP5L,GLUB6,PRO13A.1,PRO16.2,_,PYL/RCAR7,TMS5,IAA29,_,GLUBX,_,_,_,SCP27,HSFA7,GLUA2,DEFL13,HAP3D,RSUS3,DHN6,NAC127,ERF115	OsHAP2I, NF-YA, CBF-B, NF-YA8, OsNF-YA8, OsEnS-136, NFYA8,Glua1*, Glua1, GLUA-1, GluA-1, GluA1, Glu19, OsEnS-16,Prol-16, OsEnS-87, EnS-87, pro16.1, OsPRO16.1,OsGLP8-2, GLP8-2, OsGER3, GLP16, OsEnS-117, OsCDP8.2, CDP8.2,ONAC025, ONAC25, OsEnS-144, OsNAC025, NAC025,OsEnS-22, OsOSCA2.5, OsIOSCA2.5, OsDDP2, DDP2, OsDDP2.1, OsDDP2.2, OsERD, ERD,OsbZIP58, bZIP58, OsEnS-92, OsSMF1, SMF1, OsRISBZ1, RISBZ1/bZIP58,OsbHLH144, OsEnS-65, bHLH144, EnS-65, OsZOU-1, OsZOU1, ZOU-1, ZOU1,OsTIP3;2, TIP3-2, OsEnS-70,OsEnS-81, OsRLCK192,OsEnS-134,OsEnS-119,OsEnS-151,OsEnS-148,OsEnS-149,OsEnS-71,OsEnS-95,OsC3H10, OsTZF8, OsCCCH-Zn-2, OsEnS-12,OsEnS-17,OsEnS-53,OsEnS-125,OsEnS-6,OsEnS-140,OsEnS-114,OsFBX289, OsKIX_7, OsFbox442, Os_F0407, OsEnS-121,  OsFBX289, FBX289,RA5B, OsEnS-99,RA16, OsEnS-100,OsEnS-101,Os_F0785, OsEnS-103,  OsFBX228, FBX228,OsEnS-104, OsHMP35, HMP35, OsHIPP32, OsaHIP32, HIP32, HIP7_Ath,OsEnS-79,OsEnS-67,OsEnS-63,OsEnS-89, OsPYL/RCAR13, OsPYL13, PYL13,OsLEA3, OsEnS-84,ONAC026, ONAC26, OsEnS-8, DLN11, OsDLN11,OsMyb4, OSMYB4, MYB4, OsEnS-11, OsGL1C, GL1C, OsMYB13, MYB13, Os2R_MYB11, 2R_MYB11 ,OsEnS-107, EnS-107, OsI85, I85, OsICL, Osl85, l43, Osl43, OsL85,OsEnS-15, EnS-15,OsERF#044, OsERF044, OsERF44, AP2/EREBP#112, AP2/EREBP112, OsDREB2C, DREB2C, OsEnS-124,OsEnS-56, pro10.2, OsPRO10.2,OsEnS-76, pro13b.19, OsPRO13B.19,OsEnS-86, EnS-86, MEG3,R2R3-MYB, OsEnS-23, Os2R_MYB20,OsEnS-5, OsHAP5I, OsNF-YC10, NF-YC10, NFYC10,OsEnS-48,OsEnS-49,OsEnS-25, OsDEFL2, OsDf-02, Df-02, DEFL1, OsDEFL1,OsEnS-50,OsEnS-60,OsEnS-42,OsEnS-46,OsEnS-3,OsEnS-39,OsEnS-37,OsFbox529, Os_F0667, OsEnS-132,  OsFBX364, FBX364,OsEnS-35,OsEnS-10,Glua3*, GLUA-3, GT22, GT3, Glu21, GluA-3, OsEnS-47, EnS-47, GLU3,OsEnS-38, OsPARP3,OsEnS-27, OsCYP71X3,REP-1, OsREP-1, OsREP1, OsSAG12-1, SAG12-1, OsEnS-21,OsFIE1, OsWD40-154, OsEnS-116, OsFIE1/OsWD40-154, WD40-154 ,OsEnS-147, Gnk2RLK-9, OsGnk2RLK-9,GluD1, GluD-1, OsGluD-1, OsEnS-33, EnS-33, GluD,OsEnS-20, OspPLAIIalpha, pPLAIIalpha, PAT2, PAT,OsEnS-59,OsGLYI10, OsEnS-113,Lea14A, OsLEA5, OsEnS-2,OsEnS-19,OsLEA32, OsEnS-55,OsPRR12, Rra17, OsRRA17, OsEnS-61,OsLEA30, OsEnS-43,OsEnS-28, OsCYP71X4,OsEnS-62,OsEnS-66,OsEnS-78,OsEnS-68,OsEnS-26, EnS-26, Os CYP71X12,OsEnS-18, EnS-18, Os6,OsEnS-40, EnS-40,Amy3A/B/C*(RAmy3A/B/C), Amy3A, RAmy3A/B/C, Amy3A/B/C*, AMY1.2, Amy5, RAmy3A, OsEnS-129,OsEnS-80,OsLEA33, D34, OsEnS-85,OsEnS-91,OsEnS-96,OsEnS-102,OsEnS-105,OsEnS-106,OsFBX270, OsKIX_5, OsFbox419, Os_F0547, OsEnS-118,  OsFBX270, FBX270,OsTIP3;1, TIP3-1, TIP3.1, TIP3, OsEnS-139,OsEnS-112,OsEnS-120,OsEnS-127,OsC3H1, OsEnS-1,OsGSTF12, OsEnS-7,OsEnS-14,OsEnS-52,RASI, OsEnS-69,OsEnS-74,OsEnS-115,OsEnS-126,OsEnS-138,OsEnS-150, OsDR, DR,OsEnS-128, OsAlaAT5, AlaAT5,OsEnS-58,OsENODL6, OsELA2, ELA2, OsEnS-24,OsBgal14, OsBGal14, OsEnS-135, OsMEG2, MEG2,OscytME3, OsEnS-13, NADP-ME, OsNADP-ME,OsHSP70, OsEnS-45, EnS-45,ole16, OsEnS-72, OsOLE16,OsEnS-110, EnS-110, OsFLZ23,OsEnS-4, OsLEA1b, LEA1b,OsEnS-51, OsFLOC1, OsCDP3.5, CDP3.5,GluC, OsEnS-36, EnS-36, GLU2.2, GluC-1, OsGluC-1,OsPUB77, OsEnS-73,  OsPUB77, PUB77,OsEnS-64, PCC13-62, OsPCC13-62,OsEnS-130, OsPFK09, PFK09, OsPFK9,OsEnS-131, OsCslA12, OsMnS, MnS,OsEnS-57, EnS-57, OsCDP3.1, OsCDP3.10, CDP3.10,OsPME20, OsEnS-109,OsGELP78, OsEnS-82, EnS-82, OsGLIP2, GLIP2,RA17, RAP, RAG1, OsEnS-97,OsHAP3K/OsNF-YB1, OsHAP3K, OsNF-YB1, NF-YB1, nf-yb1, OsLEC1, OsNF-YB-1, NFYB1, OsEnS-41,OsRR41, RR41, Rra14, OsRR14, RR14, OsRRA14, OsEnS-54,glb1(t)*, glb1(t), glb1, alpha-Glb, Glb-1, OsGlb1, Glb1, Glb, OsEnS-77,OsBT1-1, OsEnS-29, OsBT1, OsBt1, BT1, Bt1, OsBt1-1, shr3, OsBT1-2, BT1-2,OsDof3, OsDOF3, OsEnS-34, OsDof10, Dof10, OsDof-10, OsDOF1, DOF1, DOF3, OsRPBF, OsDOF7,Prol-19, OsEnS-94, RM1, OsRM1, pro13a.2, OsPRO13A.2, PROLM26,OsEnS-133, OsHAP5L, OsNF-YC12, NF-YC12, OsNF-YC11, NF-YC11, NFYC11,OsEnS-32, EnS-32, GluB6, OsGluB6,RP6, Prol-18, OsEnS-93, pro13a.1, OsPRO13A.1, PROLM25,Prol-17, OsEnS-88, pro16.2, OsPRO16.2, PROLM24,OsEnS-122,OsPYL/RCAR7, PYL7, OsPYL7, OsPYL8, PYL8, OsEnS-90, RCAR1, OsRCAR1,tms5, NAC18, ONAC023, ONAC23, NAC23, TMS5/ONAC023, OsEnS-30,OsIAA29, OsEnS-141,OsEnS-142, ENS142,OsGluBX, OsGluBX-J, OsGluBX-I, OsEnS-31, EnS-31, GLU2.1, GluB7, OsGluB7, GluB4, OsGluB4,OsEnS-146, EnS-146, OsEnS146, EnS146 ,OsEnS-44, EnS-44, OsEnS44, EnS44,RAG2, RA14B, RA14, OsEnS-98,OsEnS-75, OsSCP27, OsSCP28, SCP28,OsHsfA7, OsHsf-01, HSFA6B, HSF01, OsHSF1, HSF1, OsEnS-9, OsHsfA7a, HsfA7a ,Glua2*, Glua2, GLUA-2, GluA-2, Glu20, GluA2, OsEnS-137,OsEnS-108, EnS-108, DEFL, OsDEFL13,OsHAP3D, OsEnS-83, OsNF-YB9, NF-YB9, NFYB9, OsLEC1A, LEC1A,RSus3(t), SUS3, SS3, OsScS3, RSs3, RSus3, OsSUS3, RSS3, OsEnS-111, Susy3, OsSusy3,OsLEA25, LEA25, OsEnS-143, OsRAB21, RAB21, Rab17, OsRab17,ONAC127, OsNAC127, OsEnS-145,OsERF#115, OsERF115, AP2/EREBP#110, AP2/EREBP110, OsEnS-123
37455	23913002	Uga Y., Sugimoto K., Ogawa S., Rane J., Ishitani M., Hara N., Kitomi Y., Inukai Y., Ono K., Kanno N., Inoue H., Takehisa H., Motoyama R., Nagamura Y., Wu J., Matsumoto T., Takai T., Okuno K., Yano M.	Control of root system architecture by DEEPER ROOTING 1 increases rice yield under drought conditions.	Nat. Genet.	45(9)	1097-102	2013	DRO1	Dro1, OsDRO1, OsSPR1, SPR1, DRO1/OsNGR3, OsNGR3, NGR3
37456	23934883	Wimmer V., Lehermeier C., Albrecht T., Auinger H.J., Wang Y., Sch?n CC.	Genome-Wide Prediction of Traits with Different Genetic Architecture Through Efficient Variable Selection.	Genetics	195(2)	573-87	2013		
37457	23908221	Pennisi E.	Geography. Advancing seasons in China.	Science	341(6145)	482-3	2013		
37458	23979575	Xu S.	Genetic Mapping and Genomic Selection Using Recombination Breakpoint Data.	Genetics	195(3)	1103-15	2013		
37459	23940322	Gao Z.Y., Zhao S.C., He W.M., Guo L.B., Peng Y.L., Wang J.J., Guo X.S., Zhang X.M., Rao Y.C., Zhang C., Dong G.J., Zheng F.Y., Lu C.X., Hu J., Zhou Q., Liu H.J., Wu H.Y., Xu J., Ni P.X., Zeng D.L., Liu D.H., Tian P., Gong L.H., Ye C., Zhang G.H., Wang J., Tian F.K., Xue D.W., Liao Y., Zhu L., Chen M.S., Li J.Y., Cheng S.H., Zhang G.Y., Wang J., Qian Q.	Dissecting yield-associated loci in super hybrid rice by resequencing recombinant inbred lines and improving parental genome sequences.	Proc. Natl. Acad. Sci. U.S.A.	110(35)	14492-7	2013	HD5,LAX1	Hd5(t)*, Hd5, qHD5, HAP3H, OsHAP3H, NF-YB, CBF-A, DTH8 , qHD5(t)*, Ghd8, Ghd8/DTH8, Lhd1, NF-YB11, OsNF-YB11, NFYB11, LH8, DTH8/Ghd8, RH8, DTH8/Ghd8/LHD1, CAR8, DTH8/Ghd8/ OsHAP3H, EF8, OsEF8,lax, lax(lx), lx, OsbHLH123, bHLH123, OsLAX1, BOS1, OsBOS1
37460	23943860	Miao C., Tang D., Zhang H., Wang M., Li Y., Tang S., Yu H., Gu M., Cheng Z.	CENTRAL REGION COMPONENT1, a Novel Synaptonemal Complex Component, Is Essential for Meiotic Recombination Initiation in Rice.	Plant Cell	25(8)	2998-3009	2013	PAIR2,RAD21-4,PAIR1,TOP6A1,PAIR3,CRC1,ZEP1,SPO11-4	Pair2, OsPAIR2, OsASY1,OsRad21-4, REC8, OsREC8, OsRAD21-4,Pair1, OsPAIR1,OsTOP6A1, OsSPO11-1, OsSPO11A, SPO11-1,,OsCRC1,OsZEP1,OsSPO11-4, OsSPO11D
37461	23777258	Shi B., Ni L., Liu Y., Zhang A., Tan M., Jiang M.	OsDMI3-mediated activation of OsMPK1 regulates the activities of antioxidant enzymes in abscisic acid signalling in rice.	Plant Cell Environ.			2013	DSG1,DMI3,IPD3	OsMAPK6, MAPK6, OsMPK6, OsSIPK, SIPK, OsMAPK1, MAPK1, MPK1, OsMPK1, MPK6, OsDSG1,OsDMI3, OsCCaMK1, OsCCaMK, OsCCAMK, CCAMK,OsIPD3, Osipd3, CYCLOPS, IPD3/CYCLOPS, OsCYCLOPS
37462	23756993	Thakur J.K., Agarwal P., Parida S., Bajaj D., Pasrija R.	Sequence and expression analyses of KIX domain proteins suggest their importance in seed development and determination of seed size in rice, and genome stability in Arabidopsis.	Mol. Genet. Genomics	288(7-8)	329-46	2013	HAC701,_,_,_,_,_,_,_,_,HAC703,HAC704	OsHAC701, OsKIX_1, OsHAC5,OsKIX_8,OsKIX_9,OsKIX_11,OsMED15_2, OsKIX_10, MED15_2, KIX_10,OsMED15_1, MED15_1, OsKIX_3, KIX_3,OsFBX283, OsKIX_6, OsFbox434, Os_F0157,  OsFBX283, FBX283,OsFBX270, OsKIX_5, OsFbox419, Os_F0547, OsEnS-118,  OsFBX270, FBX270,OsFBX289, OsKIX_7, OsFbox442, Os_F0407, OsEnS-121,  OsFBX289, FBX289,OsHAC703, OsKIX_2, OsHAC1,OsHAC704, OsKIX_4, OsHAC12 
37463	23811195	Hua Y., Sansenya S., Saetang C., Wakuta S., Ketudat Cairns JR.	Enzymatic and structural characterization of hydrolysis of gibberellin A4 glucosyl ester by a rice beta-d-glucosidase.	Arch. Biochem. Biophys.	537(1)	39-48	2013	BGLU18,BGLU31,BGLU12,BGLU6,BGLU7	Os4bglu18, Os4Bglu18, Os4BGlu18,Os9bglu31, Os9BGlu31 ,Os4bglu12, Os4BGlu12, 4BGlu12, OsTAGG2, TAGG2,Os3bglu6, Os3BGlu6, 3BGlu6,Os3bglu7, Os3BGlu7, 3BGLU7, BGlu7, BGlu1, bglu1
37464	23762371	Lu Z., Huang X., Ouyang Y., Yao J.	Genome-wide identification, phylogenetic and co-expression analysis of OsSET gene family in rice.	PLoS ONE	8(6)	e65426	2013	SDG714,_,_,_,_,_,SUVH7,_,_,_,_,_,_,_,SDG736,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,LVP1,PHS1,SET1,_,SDG725,_,SET33,IEZ1,CLF,_	OsSDG714, OsSET5, OsSUVH4,OsSET43, SDG717 ,OsSET31, SDG707 ,OsSET38, SDG741 ,OsSET30, SDG710, OsSUVH10, DLN209, OsDLN209,OsSET14, SDG739 ,OsSET4, SET4, SDG709, OsSDG709, OsSUVH7,OsSET17, SDG716 ,OsSET18, SDG738 ,OsSET19, SDG708 ,OsSET21, SDG722 ,OsSET23,OsSET26, SDG731 ,OsSET29,SDG736, OsSET9,OsSET2, SDG705,OsSET3, SDG729 ,OsSET10, SDG712 ,OsSET11, SDG706 ,OsSET12,OsSET13,OsSET36,OsSET37, SDG732 ,OsSET39,OsSET22, SDG728, OsSUVH8,OsSET35, SDG727, OsSUVH6,OsSET40, SDG733, OsSUVH11,OsSET41, SDG704, OsSUVH1,OsSET16, SDG713, OsSUVH3,OsSET32, SDG715, OsSUVH9,OsSET7, SDG730, OsPHD8, PHD8,OsSET6, SDG720, OsPHD7, PHD7,OsSET28, SDG740 ,SDG724, OsSDG724, OsLVP1, OsSET34,OsSET20, SET20, OsSDG703, SDG703, OsSUVH5, SUVH5, OsPHS1,OsSET1, SDG721, OsSDG721,OsSET42, SET42, SDG734, OsSUVH12, SUVH12,OsSDG725, OsSET8, ASHH2,OsSET25, SDG726, OsSUVH2, DLN184, OsDLN184, HKMTs,OsSET33, OsSDG723, SDG723, OsTrx1, Trx1, OsTrx1/SDG723, DLN219, OsDLN219,OsiEZ1, OsSET1, SET1, iEZ1, OsEZ1/OsiEZ1, OsEZ1, EZ1, ez1, OsSET15, SDG718, DLN84, OsDLN84,OsSET24, SDG711, EZ1, OsCLF, OsSDG711,OsSET27, SDG701 
37465	23812082	Song Y., Xu Z.F.	Ectopic Overexpression of an AUXIN/INDOLE-3-ACETIC ACID (Aux/IAA) Gene OsIAA4 in Rice Induces Morphological Changes and Reduces Responsiveness to Auxin.	Int J Mol Sci	14(7)	13645-56	2013	IAA9,IAA18,IAA4,IAA6,IAA8,IAA10	OsIAA9, OsIAA2,OsIAA18,OsIAA4, IAA20, OsIAA20,OsIAA6,OsIAA8,OsIAA10, OsIAA5, DLN71, OsDLN71
37466	23849131	Huang J., Qin F., Zang G., Kang Z., Zou H., Hu F., Yue C., Li X., Wang G.	Mutation of OsDET1 increases chlorophyll content in rice.	Plant Sci.	210	241-9	2013	DET1	OsDET1
37467	23793712	Ji J., Tang D., Wang M., Li Y., Zhang L., Wang K., Li M., Cheng Z.	MRE11 is required for homologous synapsis and DSB processing in rice meiosis.	Chromosoma	122(5)	363-76	2013	COM1,PAIR3,MRE11,TOP6A1,ZEP1,PAIR2,RAD21-4,RMC1	OsCOM1,,OsMRE11, Mre11,OsTOP6A1, OsSPO11-1, OsSPO11A, SPO11-1,OsZEP1,Pair2, OsPAIR2, OsASY1,OsRad21-4, REC8, OsREC8, OsRAD21-4,MER3, mer3, OsMER3, RCK, OsRCK, Os-MER3
37468	23849121	Liu D.R., Huang W.X., Cai X.L.	Oligomerization of rice granule-bound starch synthase 1 modulates its activity regulation.	Plant Sci.	210	141-50	2013	_,WX1	OsGCS, GCS, gamma-ECS/GCS, gamma-ECS,wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx
37469	23803583	Dong H., Fei G.L., Wu C.Y., Wu F.Q., Sun Y.Y., Chen M.J., Ren Y.L., Zhou K.N., Cheng Z.J., Wang J.L., Jiang L., Zhang X., Guo X.P., Lei C.L., Su N., Wang H., Wan J.M.	A rice virescent-yellow leaf mutant reveals new insights into the role and assembly of plastid caseinolytic protease in higher plants.	Plant Physiol.	162(4)	1867-80	2013	CLPP5,CLPT,CAB1R,RPOA,V2,RPS15,CLPP3,CLPP1,_,SIG2A,CLPR4,GPA8,CLPP4,RPS15,V1,PSBA,VYL,RPOTP,V3	OsClpP5, ClpP5, OsClp4, CLP4,OsClpT, ClpT,cab1R, LHCP, CAB, OsLhcb1, Lhcb1, Cab1, OsCAB1, Lhcb1b, OsLhcb1b, CAB2R,RpoA,v2, mGmk, GMK, Gmk, pt/mtGK, pt/mt GK, OsV2, OsGMK,rps15,OsClpP3, OsClp2, CLP2,OsClpP1, ClpP1,Lhcp2, LhcpII, LchP2 ,OsSIG2A, OsSig2A,OsClpR4, ClpR4, OsClp1, CLP1,v-ATP-E, Osv-ATP-E, OsVHA-E1, VHA-E1, OsGPA8, OsRHA4, RHA4,OsClpP4, ClpP4, OsClp11, CLP11,rps15,v1, NUS1,OsV1, OsNUS1,PsbA, psbA, OsPsbA, PSBD1, OsPSBD1, psbD1,OsClpP6, ClpP6, CLP6, NAL9, NAL9/VYL,OsRpo Tp, OsRpoTp, NEP, RpoTp, rpoTP2,v3, RNRL1, rnrl1, RNR1, RNRL, Osv3, OsRNRL1, OsRNR1, OsRNRL
37470	23743654	Lee H.J., Abdula S.E., Jang D.W., Park S.H., Yoon U.H., Jung Y.J., Kang K.K., Nou I.S., Cho Y.G.	Overexpression of the glutamine synthetase gene modulates oxidative stress response in rice after exposure to cadmium stress.	Plant Cell Rep.	32(10)	1521-9	2013	GLN1;1	OsGLN1;1, GS1, RGS28, OsGS1;1, GS1;1, OsGS, GS1, OsGS1, GLN1-1, OsGS1-1, GS1-1, GS1.1, OsGS1.1
37471	23780733	Louren?o T., Sapeta H., Figueiredo D.D., Rodrigues M., Cordeiro A., Abreu I.A., Saibo N.J., Oliveira M.M.	Isolation and characterization of rice (Oryza sativa L.) E3-ubiquitin ligase OsHOS1 gene in the modulation of cold stress response.	Plant Mol. Biol.	83(4-5)	351-63	2013	P5CS,BHLH2,_,DREB1A	OsP5CS, P5CS1, OsP5CS1, OsALDH18B1, ALDH18B1, OsP5CS-1, P5CS-1,OsbHLH002, bHLH002, OsbHLH2, bHLH2, OsICE1, ICE1, OsbHLH002/OsICE1,OsHOS1, HOS1,OsDREB1A, Os DREB1A, CBF3, OsCBF3, OsDREB1A/OsCBF3, ERF24, OsERF24, OsERF024, OsERF#024, AP2/EREBP#114, AP2/EREBP114, OsDREBL
37472	23732981	Dangwal M., Malik G., Kapoor S., Kapoor M.	De Novo Methyltransferase, OsDRM2, Interacts with the ATP-dependent RNA helicase, OseIF4A, in Rice.	J. Mol. Biol.	425(16)	2853-66	2013	EIF4A2,DRM1B,DRM3,DRM2,DRM1A	eIF-4a, EIF4A, OseIF4A, eIF4A2, eIF4A-3, OsRH23,OsDRM1b,OsDRM3, DRM2-2 ,OsDRM2, osdrm2, DRM2-1,OsDRM1a
37473	23793979	Xu J., Xiong W., Cao B., Yan T., Luo T., Fan T., Luo M.	Molecular characterization and functional analysis of "fruit-weight2.2-like" gene family in rice.	Planta	238(4)	643-55	2013	PCR1,TGW2,FWL4,FWL2,FWL3,FWL6,FWL8,FWL7	OsFWL5, FWL5, OsPcr1, OsPCR1, OsFWL5/OsPCR1, OsFWL7, FWL7,OsFWL1, FWL1, OsTGW2, OsCNR1, CNR1, OsPCR3, PCR3, OsFWL3, FWL3,OsFWL4, OsFWL8, FWL8,OsFWL2, OsPCR1, PCR1, OsFWL1, FWL1,OsFWL3, OsFWL2/OsPCR5, OsFWL2, OsPCR5, FWL2, PCR5,OsFWL6, OsCNR10, CNR10, OsFWL5/OsPCR1, OsFWL5, OsPCR1, FWL5, PCR1 ,OsFWL8,OsFWL7, PGPS/D12, PGPS, D12, OsFWL6, FWL6
37474	23808500	Tuteja N., Sahoo R.K., Garg B., Tuteja R.	OsSUV3 dual helicase functions in salinity stress tolerance by maintaining photosynthesis and antioxidant machinery in rice (Oryza sativa?L. cv. IR64).	Plant J.	76(1)	115-27	2013	_	OsSUV3, SUV3
37475	23748776	Yamane H.	Biosynthesis of phytoalexins and regulatory mechanisms of it in rice.	Biosci. Biotechnol. Biochem.	77(6)	1141-8	2013		
37476	23086454	Li Y.S., Sun H., Wang Z.F., Duan M., Huang S.D., Yang J., Huang J., Zhang H.S.	A novel nuclear protein phosphatase 2C negatively regulated by ABL1 is involved in abiotic stress and panicle development in rice.	Mol. Biotechnol.	54(2)	703-10	2013	BZIP46,BIPP2C1,PP2C1	ABL1, bZIP46, OsABL1, OsbZIP46, OsAREB8, OsABF2, ABF2, OsABF3, ABF3, OsbZIP46CA1, OsZIP46, ZIP46, OsbZIP46/OsABF2,OsBIPP2C1, OsPP45, PP45,OsPP2C1, OsSIPP2C1, SIPP2C1, OsPP2C68, PP2C68, OsPP108
37477	23979891	Dong Y., Chen Z., Pei X., Wang F., Yuan Q., Wu H., Jia S., Peng Y.	Variation of the OsGI intron and its phenotypic associations in Oryza rufipogon Griff. and Oryza sativa L.	Genet. Mol. Res.	12(3)	2652-69	2013	GI	OsGI, Gi, Os-GI
37478	23846875	Wang J.C., Xu H., Zhu Y., Liu Q.Q., Cai X.L.	OsbZIP58, a basic leucine zipper transcription factor, regulates starch biosynthesis in rice endosperm.	J. Exp. Bot.	64(11)	3453-66	2013	AGPL1,RISBZ1,ALK,WX1,SBE3,ISA2,SBE1	OsAGPL1, OsAPL1, APL1, OsAGPL3, AGPL3, OsAGPSL3, AGPSL3,OsbZIP58, bZIP58, OsEnS-92, OsSMF1, SMF1, OsRISBZ1, RISBZ1/bZIP58,alk, SSII-3, OsSSIIa, OsSSII-3, SSIIa, SSS2A, OsSSIIaChr6, SS2a,wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx,SBEIII*, SBEIII, Sbe3, RBE3, QEIIa, QEIIA, BEIIb, BEIIB, SBEIIb, OsBEIIb, sbe3, SBE III, OsSBEIIb, SBEIIb,OsISA2, ISA II, OsISA II,sbe1, Rbe1. Sbe1, sbe1*(QEI), RBE1, BEI, SBE I, QEI, OsBEI, BE1, OsSBE1, OsSBEI, SBEI
37479	23855375	Schmidt R., Schippers J.H., Mieulet D., Obata T., Fernie A.R., Guiderdoni E., Mueller-Roeber B.	MULTIPASS, a rice R2R3-type MYB transcription factor, regulates adaptive growth by integrating multiple hormonal pathways.	Plant J.	76(2)	258-73	2013	CEL9A,EXPB2,EXPB3,_,MPS,EXPB6,EXPA4,EXPA8	OsCel9A, OsGH9C3, GH9C3, OsGLU5, Cel9A ,OsEXPB2, OsaEXPb1.9, EXPb1.9,OsEXPB3, osaEXPb1.10, EXPb1.10,OsGH9B15, OsGLU14, GH9B15, GLU14,OsMPS, Os2R_MYB25, 2R_MYB25,OsEXPB6, osaEXPb1.8, EXPb1.8,OsEXP4 (Os-EXP4), OsEXPA4, OsEXP4, Os-EXP4, OsaEXPa1.22,OsEXPA8, OsEXP8, osaEXPa1.17
37480	23683934	Passaia G., Spagnolo Fonini L., Caverzan A., Jardim-Messeder D., Christoff A.P., Gaeta M.L., de Araujo Mariath JE., Margis R., Margis-Pinheiro M.	The mitochondrial glutathione peroxidase GPX3 is essential for H2O2 homeostasis and root and shoot development in rice.	Plant Sci.	208	93-101	2013	GPX1,GPX4,GPX5,GPX3	OsGpx1, GPX1, OsGPx01, OsGPX1,OsGpx4, GPX4, OsGPx04, OsGPX4,OsGpx5, GPX5, OsGPx05,OsGpx3, GPX3, OsGPx03
37481	23809026	Molla K.A., Karmakar S., Chanda P.K., Ghosh S., Sarkar S.N., Datta S.K., Datta K.	Rice oxalate oxidase gene driven by green tissue-specific promoter increases tolerance to sheath blight pathogen (Rhizoctonia solani) in transgenic rice.	Mol. Plant Pathol.	14(9)	910-22	2013	PAL1,OXO2,CHT1	OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6,Osoxo4, OsOxO2, OsGLP3-4, GLP3-4, OsCDP3.7, CDP3.7,Cht1*(Chi1), Ch16, Cht1, CHT-1, CH16, RC24, OsChia1a, OsChia1, Chi1, Cht1*, Chi-1, Cht-1, Cht1, RCC1, OsCht-1, PR3, OsPR3
37482	23884108	Zhu Z., Tan L., Fu Y., Liu F., Cai H., Xie D., Wu F., Wu J., Matsumoto T., Sun C.	Genetic control of inflorescence architecture during rice domestication.	Nat Commun	4	2200	2013	LG1	SPL8, OsSPL8, OsLG1
37483	23873084	Zhang Y.C., Yu Y., Wang C.Y., Li Z.Y., Liu Q., Xu J., Liao J.Y., Wang X.J., Qu L.H., Chen F., Xin P., Yan C., Chu J., Li H.Q., Chen Y.Q.	Overexpression of microRNA OsmiR397 improves rice yield by increasing grain size and promoting panicle branching.	Nat. Biotechnol.	31(9)	848-52	2013	MIR397A,LAC15,MIR397B	miR397a, osa-miR397a, osa-MIR397a, OsmiR397a,OsLAC, LAC, OsLAC15, OsLAC13, LAC13 ,miR397b, osa-miR397b, osa-MIR397b, miR397b*, OsmiR397b, Os-MIR397b
37484	23869567	Kushwaha H.R., Singla-Pareek SL., Pareek A.	Putative osmosensor - OsHK3b - a histidine kinase protein from rice shows high structural conservation with its ortholog AtHK1 from Arabidopsis.	J. Biomol. Struct. Dyn.			2013	HK3,AHP1	OHK2, HK, OsHK3, Ohk, Crl2, Ohk2, OsHK3b, OsHK03,OHP1, HPt, OsAHP1, Hpt2, Ohp1, OsHP2, HP2, OsHpt2, OsHPt2, OsHP02
37485	23852542	Jung K.H., Gho H.J., Nguyen M.X., Kim S.R., An G.	Genome-wide expression analysis of HSP70 family genes in rice and identification of a cytosolic HSP70 gene highly induced under heat stress.	Funct. Integr. Genomics	13(3)	391-402	2013	CTHSP70-1,BIP1	OsctHSP70-1, ctHSP70-1, OsMed37_6, Med37_6, OsHSP70.6, HSP70.6,OsBiP1, BiP1, BiP, Bip3, OsBiP3, BIP1/OsBIP3, OsMed37_2, Med37_2 
37486	23893219	Edstam M.M., Blomqvist K., Ekl?f A., Wennergren U., Edqvist J.	Coexpression patterns indicate that GPI-anchored non-specific lipid transfer proteins are involved in accumulation of cuticular wax, suberin and sporopollenin.	Plant Mol. Biol.			2013	_,_,_,_,_,_,_,_,_,C6,_,_,_,_,_,_,_,_,_,_,_,_,_,LTPG10,LTPG2,_,_	OsLLA2, OsLTPG27, LLA2, LTPG27,OsLTPG8, OsLTPg8,LTPG5, OsLTPG5, OsLTPg5, OsHyPRP10, HyPRP10,OsLTPG20, OsLTPg20,OsLTPG17, OsLTPg17,OsLTPG16, OsLTPg16,OsLTPG9, OsLTPg9,OsLTPG4, OsLTPg4,OsLTPG3, OsLTPg3,Osc6, Osg6B, OsG6B, OsLTPG25, OsLTPg25, OsLtpVII.1, Os C6,OsLTPG7, OsLTPg7,LTPG1, OsLTPG1, OsLTPg1, AGP, OsAGP, OsXYLP8, XYLP8, LTPL65,OsLTPG24, OsLTPg24, OsLtpVIII.1, LTPG24, LTPg24, LtpVIII.1,OsLTPG26,OsLTPG11, OsLTPg11,OsLTPG12, OsLTPg12,OsLTPG13, OsLTPg13,OsLTPG15, OsLTPg15,OsLTPG18, OsLTPg18,OsLTPG19, OsLTPg19,OsLTPG22, OsLTPg22,OsLTPG23, OsLTPg23,OsLLA1, OsLTPG6, OsLTPg6, OsLTPL1, LLA1, LTPG6, LTPg6, LTPL1,OsLTPG10, OsLTPg10, LTPL83 ,OsLTPG2, OsLTPg2, LTPL82,OsLLA7, OsLTPG21, OsLTPg21, LLA7, LTPG21, LTPg21, OsHyPRP25, HyPRP25,OsLLA6, OsLTPG14, OsLTPg14, LLA6, LTPG14, LTPg14
37487	23894405	Zhang H., Niu X., Liu J., Xiao F., Cao S., Liu Y.	RNAi-Directed Downregulation of Vacuolar H(+) -ATPase Subunit A Results in Enhanced Stomatal Aperture and Density in Rice.	PLoS ONE	8(7)	e69046	2013	CAM1-1,CAM1-3,AHA3,PLS1,SMG2	OsCaM1, OsCam1-1, OsCaM1-1, CAM3, Cam1-1, OsCAM1.1, CAM1.1,OsCam1-3, OsCaM1-3, CAM1,OSA3, OsA3, osAHA3, AHA3, PAM3,OsVHA-A, VHAA1, VHA-A1, OsVHA-A1, OsPLS1, OsPSL1/VHA-A1,YDA1, OsMKKK10, MKKK10, SMG2/OsMKKK10, OsSMG2, OsMAPKKK10, MAPKKK10
37488	23926064	Saito T., Kobayashi N.I., Tanoi K., Iwata N., Suzuki H., Iwata R., Nakanishi T.M.	Expression and Functional Analysis of the CorA-MRS2-ALR-Type Magnesium Transporter Family in Rice.	Plant Cell Physiol.	54(10)	1673-83	2013	MRS2-3,MRS2-1,MRS2-6,MRS2-9,MRS2-8,MRS2-5,MRS2-7,MRS2-4,MRS2-2	OsMRS2-3,OsMGT, OsMRS2-1,OsMRS2-6, OsMGT3, MGT3,OsMRS2-9,OsMRS2-8,OsMRS2-5,OsMRS2-7,OsMGT6, OsMRS2-4,OsMGT1, OsMRS2-2, MGT1
37489	23980801	Dubouzet J.G., Matsuda F., Ishihara A., Miyagawa H., Wakasa K.	Production of indole alkaloids by metabolic engineering of the tryptophan pathway in rice.	Plant Biotechnol. J.			2013	TDC1,ASA1,TYDC	OsTDC, TDC, TDC2, OsTDC1, OsTDC4,OASA1 (=ASA1), OsASA1, OASA1, OASA1(D323N), OASA1D,TyDC, OsTyDC, OsTYDC, TDC, OsTDC3, TDC3, OsTDC1
37490	23918968	Huang J., Zhao X., Cheng K., Jiang Y., Ouyang Y., Xu C., Li X., Xiao J., Zhang Q.	OsAP65, a rice aspartic protease, is essential for male fertility and plays a role in pollen germination and pollen tube growth.	J. Exp. Bot.	64(11)	3351-60	2013	_,_,_,ASP1	OsAP65,OsCDR1,Oryzasin,OsAsp1
37491	23924074	Dong X., Wang X., Zhang L., Yang Z., Xin X., Wu S., Sun C., Liu J., Yang J., Luo X.	Identification and characterization of OsEBS, a gene involved in enhanced plant biomass and spikelet number in rice.	Plant Biotechnol. J.			2013	EBS	OsEBS
37492	23949687	Xiang J., Ran J., Zou J., Zhou X., Liu A., Zhang X., Peng Y., Tang N., Luo G., Chen X.	Heat shock factor OsHsfB2b negatively regulates drought and salt tolerance in rice.	Plant Cell Rep.	32(11)	1795-806	2013	HSFB2B	HSfB2b, OsHsfB2b, OsHsf-21, rHsf2, HSF2, HSF21, OsHSF21, OsHSF7
37493	23918260	Liu C., Mao B., Ou S., Wang W., Liu L., Wu Y., Chu C., Wang X.	OsbZIP71, a bZIP transcription factor, confers salinity and drought tolerance in rice.	Plant Mol. Biol.			2013	PP2C9,_,CATA,HKT6,CLC2,COR413-TM1,BZIP71,VHA-B,NHX1	OsPP15, PP15, OsPP2C09, PP2C09, OsPP2C9, OsPP2C3,OsMyb4, OSMYB4, MYB4, OsEnS-11, OsGL1C, GL1C, OsMYB13, MYB13, Os2R_MYB11, 2R_MYB11 ,CATA1, Cat A1*, OSCAT-A, Cat2, CatA1, CAT-A, OsCatA, OsCAT, CAT, catA, OSCATA, OsCATc, OsCATA, OsCAT1A, CAT1, OsCAT1, OsCATC, OsCAT2,OsHKT6, OsHKT1;3, HKT1;3, OsHKT1;3_FL, OsHKT1;3_V1, OsHKT1;3_V2, OsHKT1;3_V3, OsHKT1;3_V4, OsHKT1;3_V5,CBSCLC3, OsCBSCLC3, OsCBSCLC3a, OsCBSCLC3b, OsCLC1, OsCLC-1, OsCLC2, OsCLC-2, CLC-2, OsCLC3, CLC3,OsCOR413-TM1, Oscor413-tm1,OsbZIP71, DLN221, OsDLN221, DLN222, OsDLN222,OsVHA-B, VHA-B1, OsVHA-B1,OsNHX1, OcNHX1, OgNHX1, OrNHX1, OpNHX1, ObNHX1
37494	23707881	Sharma I., Ching E., Saini S., Bhardwaj R., Pati P.K.	Exogenous application of brassinosteroid offers tolerance to salinity by altering stress responses in rice variety Pusa Basmati-1.	Plant Physiol. Biochem.	69	17-26	2013	DWARF4,D61,SALT	OsDWARF4, osdwarf4, OsDWF4, DWF4, CYP90B2, OsCYP90B2, D4, OsD4,d61*, dwf42, d61, OsBRI1, OSBRI1, BRI1, Os BRI1, Osbri1, OsBRKq1, BRKq1,salT*(sal1), SalT1*, sal1, Sal1, SALT, ML, SalT, OsSalT, OsJRL, JRL, Osl43, OsL43, OsMBL1, MBL1, OsJRL01, JRL01, OsJRL1, JRL1
37495	23927868	Kawano Y., Shimamoto K.	Early signaling network in rice PRR-mediated and R-mediated immunity.	Curr. Opin. Plant Biol.	16(4)	496-504	2013	CERK1,RLCK185,_	OsCERK1, OsLysM-RLK9, Os-CERK1, Os-LysM-RLK9, OsLysMRLK9, OsCERK1/OsLYK9, OsLYK9, LYK9,OsRLCK185,OsRacGEF1, RacGEF1, OsGEF1
37496	23944972	Ji S.H., Gururani M.A., Lee J.W., Ahn B.O., Chun S.C.	Isolation and characterisation of a dwarf rice mutant exhibiting defective gibberellins biosynthesis.	Plant Biol (Stuttg)			2013	KS1,KS2,KS3	OsKS1, KS1, KS1A, KSL1, OsKSL1, OsKS1A, OsKS1B, OsKS1C, Ks1, Os KS1, OsTPS26, TPS6, OsTPS6,OsKS2, KSL2, OsKSL2, OsTPS27, TPS27, TPS2, OsTPS2,OsKS3, OSKS3, KS3, KSL3, OsKSL3, OsKS2, KS2, OsTPS25, TPS39, OsTPS39
37497	23918184	Sharma R., Priya P., Jain M.	Modified expression of an auxin-responsive rice CC-type glutaredoxin gene affects multiple abiotic stress responses.	Planta	238(5)	871-84	2013	GRX8	OsGRX8, OsROXY1, OsROXY2
37498	23963678	Chen Z., Fujii Y., Yamaji N., Masuda S., Takemoto Y., Kamiya T., Yusuyin Y., Iwasaki K., Kato S.I., Maeshima M., Ma J.F., Ueno D.	Mn tolerance in rice is mediated by MTP8.1, a member of the cation diffusion facilitator family.	J. Exp. Bot.	64(14)	4375-87	2013	MTP8.1	OsMTP8.1
37499	23907515	Liu X., Shangguan Y., Zhu J., Lu Y., Han B.	The rice OsLTP6 gene promoter directs anther-specific expression by a combination of positive and negative regulatory elements.	Planta	238(5)	845-57	2013	_	OsLTPd11, OsLTP6, OsLtpVI.3, OsDIL, DIL
37500	23967316	Hwang H., Yoon J., Kim H.Y., Min M.K., Kim J.A., Choi E.H., Lan W., Bae Y.M., Luan S., Cho H., Kim B.G.	Unique Features of Two Potassium Channels, OsKAT2 and OsKAT3, Expressed in Rice Guard Cells.	PLoS ONE	8(8)	e72541	2013	KAT1,KAT3,KAT2	OsKAT1, OsKAT3,OsKAT3, OsKAT1, KAT1,OsKAT2
37501	23895290	Mishra M., Kanwar P., Singh A., Pandey A., Kapoor S., Pandey G.K.	Plant Omics: Genome-Wide Analysis of ABA Repressor1 (ABR1) Related Genes in Rice During Abiotic Stress and Development.	OMICS	17(8)	439-50	2013	ERF102,ERF124,ERF98,ERF107,ERF100,ERF118,ERF103,ERF104,ERF105,ERF99,ERF106,ERF101	OsERF#102, OsERF102, AP2/EREBP#123, AP2/EREBP123, OsEATB, EATB,DERF8, OsDERF8, OsERF#124, OsERF124, AP2/EREBP#158, AP2/EREBP158,OsERF#098, OsERF098, OsERF98, AP2/EREBP#120, AP2/EREBP120,OsERF#107, OsERF107, AP2/EREBP#015, AP2/EREBP15,OsERF#100, OsERF100, AP2/EREBP#036, AP2/EREBP36,OsERF#118, OsERF118, AP2/EREBP#117, AP2/EREBP117,DERF5, OsDERF5, OsERF#103, OsERF103, AP2/EREBP#130, AP2/EREBP130, OsERF109,DERF3, OsDERF3, OsERF#104, OsERF104, AP2/EREBP#152, AP2/EREBP152, RAP2, OsRAP2,OsERF#105, OsERF105, AP2/EREBP#050, AP2/EREBP50,OsERF#099, OsERF099, OsERF99, AP2/EREBP#080, AP2/EREBP80, OsEREBP2, EREBP2,DERF7, OsDERF7, OsERF#106, OsERF106, AP2/EREBP#111, AP2/EREBP111, OsERF106MZ, ERF106MZ,OsERF#101, OsERF101, OsDERF6, DERF6, AP2/EREBP#089, AP2/EREBP89, OsRap2.6, Rap2.6, ERF113, OsERF113, OsERF101/OsRAP2.6
37502	23918959	Geng S., Li A., Tang L., Yin L., Wu L., Lei C., Guo X., Zhang X., Jiang G., Zhai W., Wei Y., Zheng Y., Lan X., Mao L.	TaCPK2-A, a calcium-dependent protein kinase gene that is required for wheat powdery mildew resistance enhances bacterial blight resistance in transgenic rice.	J. Exp. Bot.	64(11)	3125-36	2013	PR1A,_,AOS2,PR1B,PR10A,ICS1,NH1,CDPK13,PAL1,WRKY45	OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1, OsPR1b, PR1alpha, OsPR1alpha,Lox2:Os:1, OsLOX9, LOX9, OsLOX8, LOX8, OsLOX2, LOX2, OsRLL, OsHI-LOX, HI-LOX, RLL2 LOX, RLL2, Lox2osPil, OsLOX2;1, LOX2;1, OsLOX1, OsLOX7, LOX7,OsAOS2, CYP74A2, OsAOS, OsAOS1,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1, OsPR1a, PR1a,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsICS1, OsICS, ICS,OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2, DLN5, OsDLN5,  OsBTBA1, BTBA1,OsCDPK13, OsCPK13, OsCDPK7, CDPK7, OsCPK13-1, OsCPK13-2,OsPAL, Pal1*, Pal1, PAL, Pal_1, PalI, PAL2, OsPAL01, PAL01, OSPAL, CP-1, GP-1, OsPAL1, PAL3, OsPAL3,OsWRKY45, OsWRKY45-1, OsWRKY45-2, WRKY45-1, WRKY45-2
37503	19034497	Song Y., Wang L., Xiong L.	Comprehensive expression profiling analysis of OsIAA gene family in developmental processes and in response to phytohormone and stress treatments.	Planta	229(3)	577-91	2009	IAA11,IAA21,IAA13,IAA12,IAA14,IAA3,IAA5,IAA25,IAA27,IAA9,IAA18,IAA7,IAA29,IAA4,IAA8,IAA19,IAA17,IAA16,IAA2,IAA6,IAA28,IAA1,IAA24,IAA10,IAA31,IAA23,IAA20,IAA26,IAA30,IAA15	OsIAA11,OsIAA21,OsIAA13, OsIAA1, OsiIAA1,OsIAA12,OsIAA14, AUX/IAA14, OsAUX/IAA14 ,OsIAA3,OsIAA5,OsIAA25,OsIAA27,OsIAA9, OsIAA2,OsIAA18,OsIAA7, DLN51, OsDLN51,OsIAA29, OsEnS-141,OsIAA4, IAA20, OsIAA20,OsIAA8,OsIAA19,OsIAA17, OsIAA17q5, IAA17q5,OsIAA16, DLN134, OsDLN134,OsIAA2,OsIAA6,OsIAA28,OsIAA1, OsIAA4,OsIAA24,OsIAA10, OsIAA5, DLN71, OsDLN71,OsIAA3, IAA3, OsIAA31, OsIAA30, IAA30,OsIAA23,OsIAA20,OsIAA26,OsIAA30,OsIAA15
37504	19888828	Bishun Deo Prasad, Creissen G., Lamb C., Bharat B Chattoo	Overexpression of rice (Oryza sativa L.) OsCDR1 leads to constitutive activation of defense responses in rice and Arabidopsis.	Mol. Plant Microbe Interact.	22(12)	1635-44	2009	PR1B,PR1-73,PR1-71,PR1-22,_,PR1-121,PR1-21,PR1-52,PR1-12,PR1-101,PR1-51,PR1A,PR1-72	OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1, OsPR1a, PR1a,OsPR1#073, OsPR1-73,OsPR1#071, OsPR1-71,OsPR1#022, OsPR1-22,OsCDR1,OsPR1#121, OsPR1-121,OsPR1#021, OsPR1-21,OsPR1#052, OsPR1-52,OsPR1#012, PR1#012, OsPR1-12, OsPR1.1, PR1.1,OsPR1#101, OsPR1-101, OsPR1L2, PR1L2, OsPRB1, PRB1,OsPR1#051, OsPR1-51,OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1, OsPR1b, PR1alpha, OsPR1alpha,OsPR1#072, OsPR1-72, PR1L, OsPR1L, OsPRB1, PRB1
37505	18247056	Mitsuhara I., Iwai T., Seo S., Yanagawa Y., Kawahigasi H., Hirose S., Ohkawa Y., Ohashi Y.	Characteristic expression of twelve rice PR1 family genes in response to pathogen infection, wounding, and defense-related signal compounds (121/180).	Mol. Genet. Genomics	279(4)	415-27	2008	PR1-51,PR1-52,PR1A,PR1B,PR1-71,PR1-101,PR1-22,PR1-121,PR1-21,PR1-73,PR1-72,PR1-12	OsPR1#051, OsPR1-51,OsPR1#052, OsPR1-52,OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1, OsPR1b, PR1alpha, OsPR1alpha,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1, OsPR1a, PR1a,OsPR1#071, OsPR1-71,OsPR1#101, OsPR1-101, OsPR1L2, PR1L2, OsPRB1, PRB1,OsPR1#022, OsPR1-22,OsPR1#121, OsPR1-121,OsPR1#021, OsPR1-21,OsPR1#073, OsPR1-73,OsPR1#072, OsPR1-72, PR1L, OsPR1L, OsPRB1, PRB1,OsPR1#012, PR1#012, OsPR1-12, OsPR1.1, PR1.1
37506	20566579	Fu-Jun Qin, Qian-Wen Sun, Li-Min Huang, Xiang-Song Chen, Dao-Xiu Zhou	Rice SUVH histone methyltransferase genes display specific functions in chromatin modification and retrotransposon repression.	Mol Plant	3(4)	773-82	2010	TOS17,SDG714,_,_,_,_,_,SUVH7,_,_,_,_,PHS1	Tos17, Osr21, Tos17chr10, Tos17_Chr10, Tos17chr7, Tos17_Chr7,OsSDG714, OsSET5, OsSUVH4,OsSET42, SET42, SDG734, OsSUVH12, SUVH12,OsSET41, SDG704, OsSUVH1,OsSET16, SDG713, OsSUVH3,OsSET32, SDG715, OsSUVH9,OsSET40, SDG733, OsSUVH11,OsSET4, SET4, SDG709, OsSDG709, OsSUVH7,OsSET30, SDG710, OsSUVH10, DLN209, OsDLN209,OsSET25, SDG726, OsSUVH2, DLN184, OsDLN184, HKMTs,OsSET35, SDG727, OsSUVH6,OsSET22, SDG728, OsSUVH8,OsSET20, SET20, OsSDG703, SDG703, OsSUVH5, SUVH5, OsPHS1
37507	21435223	Jeffery L Gustin, Michael J Zanis, David E Salt	Structure and evolution of the plant cation diffusion facilitator family of ion transporters.	BMC Evol. Biol.	11	76	2011	MTP7,MTP5,MTP8,MTP6,MTP12,MTP8.1,MTP11.1,MTP9,MTP1,MTP11	OsMTP7,OsMTP5,OsMTP8, MTP8.2, OsMTP8.2,OsMTP6,OsMTP12,OsMTP8.1,OsMTP11.1,OsMTP9,OsMTP1,OsMTP11, OsMTP5, MTP5
37508	18616466	Margis R., Dunand C., Felipe K Teixeira, Marcia Margis-Pinheiro	glutathione peroxidase family - an evolutionary overview.	FEBS J.	275(15)	3959-70	2008	GPX1,GPX4,PHGPX,GPX3,GPX5	OsGpx1, GPX1, OsGPx01, OsGPX1,OsGpx4, GPX4, OsGPx04, OsGPX4,OsGpx2, GPX2, OsGPx02, PHGPX, ricPHGPX, riPHGPX ,OsGpx3, GPX3, OsGPx03,OsGpx5, GPX5, OsGPx05
37509	19788421	Sharma R., R K Mohan Singh, Malik G., Deveshwar P., Akhilesh K Tyagi, Kapoor S., Kapoor M.	Rice cytosine DNA methyltransferases - gene expression profiling during reproductive development and abiotic stress.	FEBS J.	276(21)	6301-11	2009	CMT3,DRM1A,DRM2,DRM1B,DRM3,MET1A,CMT1,CMT2,DNMT2,MET1B	OsCMT3, CMT3-1, CMT2, OsCMT2,OsDRM1a,OsDRM2, osdrm2, DRM2-1,OsDRM1b,OsDRM3, DRM2-2 ,OsMET1a, OsMET1-1, MET1a, MET1-1, OsMET1, OsDMT702, DMT702,OsCMT1, OsCMT3b, CMT3b,OsCMT2, OsCMT3a, CMT3a,OsDNMT2, OsDnmt2,OsMET1b, OsMET1-2, MET1b, MET1
37510	20088860	Joo Y Kim, Won Y Kim, Kyung J Kwak, Seung H Oh, Yeon S Han, Kang H.	Zinc finger-containing glycine-rich RNA-binding protein in Oryza sativa has an RNA chaperone activity under cold stress conditions.	Plant Cell Environ.	33(5)	759-68	2010	_,_,_	OsRZ3,OsRZ1,OsRZ2
37511	15181212	Won-Yong Song, Martinoia E., Lee J., Kim D., Do-Young Kim, Vogt E., Shim D., Kwan Sam Choi, Hwang I., Lee Y.	A novel family of cys-rich membrane proteins mediates cadmium resistance in Arabidopsis.	Plant Physiol.	135(2)	1027-39	2004	PCR1	OsFWL5, FWL5, OsPcr1, OsPCR1, OsFWL5/OsPCR1, OsFWL7, FWL7
37512	21486996	Monika M Edstam, Viitanen L., Tiina A Salminen, Edqvist J.	Evolutionary history of the non-specific lipid transfer proteins.	Mol Plant	4(6)	947-64	2011	_,C6,_,_,_,_,LTP2,_,_,_,_,_,_,LTP2.9,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,PTD1,OSC4,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,LTP1.15,LTPG2,_,_,_,_,LTPG10	OsLTPx1, OsLtpY.1,Osc6, Osg6B, OsG6B, OsLTPG25, OsLTPg25, OsLtpVII.1, Os C6,OsLTPd12, OsLtpVI.4,OsLTP1.5, OsLtpI.5,OsLTPd1, OsLtpIV.1,OsLTPG4, OsLTPg4,nsLTP2, OsnsLTP2, OsLTP2.3, Ltp2, OsLTP2, RLTP2, OsLtpII.3,OsLTPG16, OsLTPg16,OsLTPG22, OsLTPg22,LTPG1, OsLTPG1, OsLTPg1, AGP, OsAGP, OsXYLP8, XYLP8, LTPL65,OsLTPG15, OsLTPg15,OsLTP1.18, OsLTP1, nsLTP1, a15, OsLtpI.18, LTPC2, OsLTPC2,OsLTP1.11, OsLtpI.11,OsLTP2.9, OsLtpII.9, LtpII.9,OsLTPd11, OsLTP6, OsLtpVI.3, OsDIL, DIL,OsLTP1.17, b1, LTP2, OsLtpI.17,OsLTP2.11, OsLtpII.11, LTP2.11, LtpII.11, OsLTPL159, LTPL159,OsLTPG24, OsLTPg24, OsLtpVIII.1, LTPG24, LTPg24, LtpVIII.1,OsLLA6, OsLTPG14, OsLTPg14, LLA6, LTPG14, LTPg14,OsLTP1.19, OsLtpI.19,OsLTP1.16, OsLtpI.16,OsLTP1.14, OsLtpI.14,OsLTP1.6, OsLtpI.6,OsLTP1.4, OsLtpI.4,OsLTPd5, LTPd5,OsLTP1.10, OsLtpI.10,OsLTP2.2, OsLtpII.2,OsLTP2.5, OsLtpII.5,OsLTP2.6, OsLtpII.6 ,OsLTP2.8, OsLtpII.8,OsLTP2.10, OsLtpII.10,OsLTP2.12, OsLtpII.12,OsLTP2.13, OsLtpII.13,OsLTPd2, OsLtpIV.2,OsLTPd3, OsLtpIV.3,OsLTPd4, OsLtpIV.4 ,OsLTPd9, OsLtpVI.1,OsLTPd10, OsLtpVI.2,OsLTPx2, OsLtpY.2,OsLTPx3, OsLtpY.3,OsLTP2.4, OsLtpII.4,OsLTPd6, OsLtpV.2,OsLTP1.7, OsLtpI.7,OsLTP1.8, OsLtpI.8,OsLTP1.9, OsLtpI.9,OsLTP1.12, OsLtpI.12,OsLTP1.13, OsLtpI.13,OsLTP1.3, OsLtpI.3,OsLTPd8, OsLtpV.4, PI,OsLTP1.1, T42, OsLtp1.1, LTP1.1,OsLTP1.20, OsLtpI.20, LTP1.20, OsLTPL14, LTPL14,OsLTP1.2, OsLtpI.2, OsPTD1, Psd1,Osc4, OsC4, Osg4B, OsLTPc1, OsLtpIII.1, C4,OsLTPd7, OsLtpV.3,OsLTP2.1, OsLtpII.1,OsLTPG3, OsLTPg3,OsLTPG8, OsLTPg8,OsLTPG9, OsLTPg9,OsLTPG11, OsLTPg11,OsLTPG12, OsLTPg12,OsLTPG13, OsLTPg13,OsLTPG17, OsLTPg17,OsLTPG18, OsLTPg18,OsLTPG19, OsLTPg19,OsLTPG20, OsLTPg20,OsLTPG23, OsLTPg23,LTPG5, OsLTPG5, OsLTPg5, OsHyPRP10, HyPRP10,OsLTPG7, OsLTPg7,OsLTP1.15, OsLtp1.15, OsLTPL23, LTPL23,OsLTPG2, OsLTPg2, LTPL82,OsLLA7, OsLTPG21, OsLTPg21, LLA7, LTPG21, LTPg21, OsHyPRP25, HyPRP25,OsLLA1, OsLTPG6, OsLTPg6, OsLTPL1, LLA1, LTPG6, LTPg6, LTPL1,OsLTP2.7, OsLtpII.7,YY1, OsLTPc2, OsLtpIII.2, LTP45,OsLTPG10, OsLTPg10, LTPL83 
37513	19825565	Da-Sheng Zhang, Wan-Qi Liang, Yuan Z., Li N., Shi J., Wang J., Yu-Min Liu, Wen-Juan Yu, Da-Bing Zhang	Tapetum degeneration retardation is critical for aliphatic metabolism and gene regulation during rice pollen development.	Mol Plant	1(4)	599-610	2008	LAP6,_,LTR1,FAE1,OSC4,MS2,RAFTIN1,WDA1,TDR	OsPKS1, PKS1, YY2, OsPKS21, PKS21, OsLAP6/OsPKS1, OsLAP6, OsCHS22, CHS22,OsACS,OsCER1, CER1, OsGL1-4, GL1-4, Os CER1, OsLTR1,OsCHS, FAE, OsFAE1, OsKCS14, KCS14,Osc4, OsC4, Osg4B, OsLTPc1, OsLtpIII.1, C4,OsMS2, OsDPW, DPW, DPW1, OsDPW1, OsFAR2, FAR2,OsRAFTIN1, BURP13, OsBURP13, Os RAFTIN1,OsWDA1, Wda1, wda1, OS-CER1, OsGL1-5,tdr, OsbHLH005, bHLH005, OsbHLH5, bhlh5, TDR1, OsTDR, OsTDR1, OsMYC5, MYC5
37514	15295114	Hui-Chun Cheng, Pei-Tsung Cheng, Peng P., Ping-Chiang Lyu, Yuh-Ju Sun	Lipid binding in rice nonspecific lipid transfer protein-1 complexes from Oryza sativa.	Protein Sci.	13(9)	2304-15	2004	_	OsLTP1.18, OsLTP1, nsLTP1, a15, OsLtpI.18, LTPC2, OsLTPC2
37515	12011089	Samuel D., Yaw-Jen Liu, Chao-Sheng Cheng, Ping-Chiang Lyu	Solution structure of plant nonspecific lipid transfer protein-2 from rice (Oryza sativa).	J. Biol. Chem.	277(38)	35267-73	2002	_,LTP2	OsLTP1.18, OsLTP1, nsLTP1, a15, OsLtpI.18, LTPC2, OsLTPC2,nsLTP2, OsnsLTP2, OsLTP2.3, Ltp2, OsLTP2, RLTP2, OsLtpII.3
37516	21044985	Garg R., Jhanwar S., Akhilesh K Tyagi, Jain M.	Genome-wide survey and expression analysis suggest diverse roles of glutaredoxin gene family members during development and response to various stimuli in rice.	DNA Res.	17(6)	353-67	2010	GRX20,GRX2,GRX27,_,_,GRX21,GRX1,GRX,GRX9,_,GRX7,GRX15,GRX16,GRX17,GRX19,GRX24,GRX25,GRX26,GRX29,GRX5,GRX11,_,_,_,_,_,_,_,_,_,_,_,_,_,GRX13,GRX8,GRX28,GRX10,GRX22,PHS9,_,GRX6,GRX23,GRX12,GRX18,GRL8,GRX4,NTRC	OsGRX20,OsGRX2,OsGRX27,OsGRL12,OsGRL1,OsGRX21,OsGRX1,grx, OsGRX, OsGRX14, OsGrx9, OsGrxC2;2, GrxC2;2, OsGrxC2.2, GrxC2.2,OsGRX9, OsGrx_C2.1, Grx_C2.1 ,OsGRL10, GRL10, OsSTA146, STA146,OsGRX7,OsGRX15,OsGRX16,OsGRX17,OsGRX19,OsGRX24,OsGRX25,OsGRX26,OsGRX29,OsGRX5,OsGRX11,OsGRL2,OsGRL3,OsGRL4,OsGRL5,OsGRL6,OsGRL7,OsGRL11,OsGRL13,OsGRL14,OsGRL17,OsGRL16,OsGRL18,OsGRL19,OsGRX13, OsROXY1,OsGRX8, OsROXY1, OsROXY2,OsGRX28,OsGRX10,OsGRX22, OsGRXS17, GRXS17,OsGRX3, GRX3,OsGRL9, GRL9,OsGRX6, OsGrx_I1, Grx_I1,OsGRX23,OsGRX12,OsGRX18,OsGRL8,OsGRX4, OsGrx_C7, Grx_C7,OsNTRC, NtrC, OsGRL15
37517	20118235	Chen X., Chern M., Patrick E Canlas, Jiang C., Ruan D., Cao P., Pamela C Ronald	A conserved threonine residue in the juxtamembrane domain of the XA21 pattern recognition receptor is critical for kinase autophosphorylation and XA21-mediated immunity.	J. Biol. Chem.	285(14)	10454-63	2010	XA21,XB24,WRKY62,XB15,XB3	Xa21*, Xa21, OsXA21,XB24,OsWRKY62, OsWRKY62.1, OsWRKY62.2, XB10, OsWRKY62-1, OsWRKY62-2,XB15, OsPP2C35, PP2C35, OsPP59, SIP35 ,Xb3,  OsRING223, RING223
37518	21209278	Kang H., Zhu H., Chu X., Yang Z., Yuan S., Yu D., Wang C., Hong Z., Zhang Z.	A novel interaction between CCaMK and a protein containing the Scythe_N ubiquitin-like domain in Lotus japonicus.	Plant Physiol.	155(3)	1312-24	2011	IPD3,DMI3,CIP73	OsIPD3, Osipd3, CYCLOPS, IPD3/CYCLOPS, OsCYCLOPS,OsDMI3, OsCCaMK1, OsCCaMK, OsCCAMK, CCAMK,OsCIP73, OsCIP73_like
37519	10363369	J F Mart?nez-Garc?a, P H Quail	The HMG-I/Y protein PF1 stimulates binding of the transcriptional activator GT-2 to the PHYA gene promoter.	Plant J.	18(2)	173-83	1999	PHYA,_,_	phyA, PHYA* (phyA), PHYA*, Phya, PHY18, phy 18, OsPHYA ,OsGT-2, GT-2, OsMSL22, MSL22,Os-PF1, PF1
37520	8672890	M Ni, K Dehesh, J M Tepperman, P H Quail	GT-2: in vivo transcriptional activation activity and definition of novel twin DNA binding domains with reciprocal target sequence selectivity.	Plant Cell	8(6)	1041-59	1996	_,PHYA	OsGT-2, GT-2, OsMSL22, MSL22,phyA, PHYA* (phyA), PHYA*, Phya, PHY18, phy 18, OsPHYA 
37521	2255908	K Dehesh, W B Bruce, P H Quail	A trans-acting factor that binds to a GT-motif in a phytochrome gene promoter.	Science	250(4986)	1397-9	1990	_	OsGT-2, GT-2, OsMSL22, MSL22
37522	19616606	Zong J., Yao X., Yin J., Zhang D., Ma H.	Evolution of the RNA-dependent RNA polymerase (RdRP) genes: duplications and possible losses before and after the divergence of major eukaryotic groups.	Gene	447(1)	29-39	2009	RDR1,RDR3,RDR4,RDR2,SHL2	OsRDR1,OsRDR3, OsRDR3a,OsRDR4, OsRDR3b,OsRDR2,shl2, SHL2, sh2, OsRDR6, RDR6
37523	0	Nozoye T., Reiko Nakanishi Ita, Nagasaki S., Takahashi M., Nakanishi H., Mori S., Naoko K Nishikawa	Diurnal Changes in the Expression of Genes That Participate in Phytosiderophore Synthesis in Rice	Soil Sci Plant Nutr	50(7)	1125-1131	2004	NAAT1,NAS1,_,_,DMAS2,NAS3,DMAS1,NAS2	OsNAAT1,OsNAS1,OsRIC1,OsARF1,OsDMAS2,OsNAS3,OsDMAS1, OsAKR5, AKR5,OsNAS2, OsNAS1
37524	0	Mitsukawa N, Hayashi H, Yamamoto K, Kidzu K, Konishi R, Masumura T, Tanaka K	Molecular cloning of a novel glutelin cDNA from rice seeds.	Plant Biotechnology	15	205-211	1998	GLU7	Glu7*(GluB2), Glu7, GluB2, GLUB2, GLUB-2, GluB-2, GluB-7, GLUB7
37525	24241455	K Wakasa, J M Widholm	A 5-methyltryptophan resistant rice mutant, MTR1, selected in tissue culture.	Theor. Appl. Genet.	74(1)	49-54	1987	MTR1	Mtr1, PDT, ADT, ADT1/MTR1, OsADT1, OsMTR1
37534	18308333	Chuenchor W., Pengthaisong S., Robert C Robinson, Yuvaniyama J., Oonanant W., David R Bevan, Esen A., Chun-Jung Chen, Opassiri R., Svasti J., James R Ketudat Cairns	Structural insights into rice BGlu1 beta-glucosidase oligosaccharide hydrolysis and transglycosylation.	J. Mol. Biol.	377(4)	1200-15	2008	BGLU7	Os3bglu7, Os3BGlu7, 3BGLU7, BGlu7, BGlu1, bglu1
37535	0	Ashikawa,I., Hayashi,N., Abe,F., Wu,J. and Matsumoto,T.	Characterization of the rice blast resistance gene Pik cloned from Kanto51	Mol. Breed.	30	485-494	2012	PIK	Pik, RMg8, Pi-k, Pik-2, Pik-1, Pik1, Pik2, Pik-H4, Pikp-1, Pikh-1, Pik1-H4, Pikh-2, Pik2-H4
37536	23652799	Bimolata,W., Kumar,A., Sundaram,R.M., Laha,G.S., Qureshi,I.A., Reddy,G.A. and Ghazi,I.A.	Analysis of nucleotide diversity among alleles of the major bacterial blight resistance gene Xa27 in cultivars of rice (Oryza sativa) and its wild relatives	Planta	238(2)	293-305	2013	XA27	Xa27(t), Xa27(t)*, Xa27
37537	23717315	Mustroph,A., Stock,J., Hess,N., Aldous,S., Dreilich,A. and Grimm,B.	Characterization of the phosphofructokinase gene family in rice and its expression under oxygen deficiency stress	Front Plant Sci	4	125	2013	PFPA3,PFK9,PFK6,PFK1,PFPA2,PPI-PFK,PFK7,PFK8,PFK3,PFK5,PFK10,PFPA4,PFPA1,PFPB,PFK2	OsPFPA3, OsPFP1a3, PFP1a3, PFP-ALPHA, OsPFP-ALPHA,OsEnS-130, OsPFK09, PFK09, OsPFK9,OsPFK06, PFK06,OsPFK01, PFK01, OsPFK1,OsPFPA2, OsPFP1a2, PFP1a2,OsPPi-PFK, OsPFK04, PFK04, PFK4,OsPFK07, PFK07, OsPFK7,OsPFK08, PFK08, OsPFK8,OsPFK03, PFK03, OsPFK3,OsPFK05, PFK05, OsPFK5, OsPFK2,OsPFK10,OsPFPA4, OsPFP1a4, PFP1a4,OsPFPA1, OsPFP1a1, PFP1a1,OsPFPB, OsPFP-B, PFP-B, PFPbeta,OsPFK02, PFK02, OsPFK2, OsPFK1
37539	19838050	Rosenblad,M.A., Larsen,N., Samuelsson,T. and Zwieb,C.	Kinship in the SRP RNA family	RNA Biol	6(5)	508-516	2009	SRP RNA,SRP RNA	SRP RNA,SRP RNA
37540	0	Ryoo,N., Eom,J.-S., Kim,H.-B., Thuy Vo,B., Lee,S.-W., Hahn,T.-R. and Jeon,J.-S.	Expression and Functional Analysis of Rice Plastidic Maltose Transporter, OsMEX1	J Korean Soc Appl Biol Chem	56(2)	149-155	2013	MT	OsMT, OsMEX1, MEX1
37541	23715469	Toda,Y., Tanaka,M., Ogawa,D., Kurata,K., Kurotani,K., Habu,Y., Ando,T., Sugimoto,K., Mitsuda,N., Katoh,E., Abe,K., Miyao,A., Hirochika,H., Hattori,T. and Takeda,S.	RICE SALT SENSITIVE3 Forms a Ternary Complex with JAZ and Class-C bHLH Factors and Regulates Jasmonate-Induced Gene Expression and Root Cell Elongation	Plant Cell	25(5)	1709-1725	2013	TIFY11C,_,TIFY10C,TIFY11A,_,RSS3	OsJAZ2, JAZ2, OsJAZ 11, OsJAZ11, Os-JAZ11, JAZ11, OsTIFY11c, OsJAZ1, JAZ1,OsbHLH089, bHLH089, bHLH89,OsJAZ7, JAZ7, OsJAZ 8, OsJAZ8, Os-JAZ8, JAZ8, OsTIFY10c, OsTIFY10c/OsJAZ8,OsJAZ3, JAZ3, OsJAZ 9, OsJAZ9, Os-JAZ9, JAZ9, OsTIFY11a, OsJAZ6, JAZ6,OsbHLH094, bHLH094, bHLH94,
37542	0	Xu,M.R., Huang,L.Y., Zhang,F., Zhu,L.H., Zhou,Y.L. and Li,Z.K.	Genome-Wide Phylogenetic Analysis of Stress-Activated Protein Kinase Genes in Rice (OsSAPKs) and Expression Profiling in Response to Xanthomonas oryzae pv. oryzicola Infection	Plant Mol. Biol. Rep.	31	877-885	2013	SAPK8,SAPK5,SAPK9,SAPK3,SAPK4,SAPK10,SAPK1,SAPK2,SAPK7,SAPK6	OsSAPK8, OsSnRK2.8, SnRK2.8,OsSAPK5, OsSnRK2.5, SnRK2.5,OsSAPK9, OsSnRK2.9, SnRK2.9,OsSAPK3, REK, OsSnRK2.3, SnRK2.3,OsSAPK4, OsSnRK2.4, SnRK2.4,OsSAPK10, OsSnRK2.10, SnRK2.10,OsSAPK1, OsSnRK2.1, SnRK2.1,OsSAPK2, OsSnRK2.2, SnRK2.2,OsSAPK7, OsSnRK2.7, SnRK2.7,OsSAPK6, OSRK1, OsSnRK2.6, SnRK2.6
37543	9375785	X Qin, S Gian?, D Breviario	Molecular cloning of three rice alpha-tubulin isotypes: differential expression in tissues and during flower development.	Biochim. Biophys. Acta	1354(1)	19-23	1997	TUBA1,TID1,TUBA3	OsTubA1, TubA1, OS-TubA3, TubA3,OsTID1, TubA2, SRS5, OS-TubA2, OsTubA2, OsSRS5, ,OsTubA3, TubA3, OS-TubA1, TubA1
37544	19558411	Choong-Hwan Ryu, Lee S., Lae-Hyeon Cho, Song Lim Kim, Yang-Seok Lee, Sang Chul Choi, Hee Joong Jeong, Yi J., Soon Ju Park, Chang-Deok Han, An G.	OsMADS50 and OsMADS56 function antagonistically in regulating long day (LD)-dependent flowering in rice.	Plant Cell Environ.	32(10)	1412-27	2009	EF1,MADS56,MADS50,LFL1	Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,OsMADS56, FDRMADS8, RMADS214,OsMADS50, AGL20, SOC1, OsSOC1, RMADS208, OsSOC1/ OsMADS50/DTH3, DTH3, OsDTH3,OsLFL1, OsSTA29, STA29
37545	20459318	Chang-Jie Jiang, Shimono M., Sugano S., Kojima M., Yazawa K., Yoshida R., Inoue H., Hayashi N., Sakakibara H., Takatsuji H.	Abscisic acid interacts antagonistically with salicylic acid signaling pathway in rice-Magnaporthe grisea interaction.	Mol. Plant Microbe Interact.	23(6)	791-8	2010	WRKY45,NH1,PR1B	OsWRKY45, OsWRKY45-1, OsWRKY45-2, WRKY45-1, WRKY45-2,OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2, DLN5, OsDLN5,  OsBTBA1, BTBA1,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1, OsPR1a, PR1a
37546	18980657	Li H., Xue D., Gao Z., Yan M., Xu W., Xing Z., Huang D., Qian Q., Xue Y.	A putative lipase gene EXTRA GLUME1 regulates both empty-glume fate and spikelet development in rice.	Plant J.	57(4)	593-605	2009	EG1	eg1, GY1, OsEG1, OsGY1
37547	24336200	Jiang L., Liu X., Xiong G., Liu H., Chen F., Wang L., Meng X., Liu G., Yu H., Yuan Y., Yi W., Zhao L., Ma H., He Y., Wu Z., Melcher K., Qian Q., H.EricXu, Wang Y., Li J.	DWARF 53 acts as a repressor of strigolactone signalling in rice	Nature	504	401-405	2013	D14,D3,D53,D53L,HSP101,WD40-12,ASP1,WD40-66	d14(d10), dwf13, d10, d14, D88, HTD2, OsHTD2, OsD14, qPPB3, D88/D14, HTD4,d3, dwf3, D3/OsMAX2, Os_F0760, SOL1, OsORE9, ORE9, MAX2, OsRFPH2-10, RFPH2-10, OsD3,  OsFBL27, FBL27,D53(D K3), DK3, Dwf34, SMXL6/7/8, OsD53,OsD53L,Oshsp101, OsHSP101, ClpB-cyt, OsClpB-cyt, ClpB-C/Hsp100, OsClpB-C,OsWD40-12, TPR1, OsTPR1,OsLIS-L1, OsWD40-155, ASP1, TPR2, OsTPR2, OsREL2, REL2, OsTPL3, TPL3, OsTPL2, TPL2, ASP-LSL,OsWD40-66, TPR3, OsTPR3, TPR1, OsTRP1, OsTPR3, OsTPL2, TPL2, OsTPL, TPL
37548	19966073	Gebert M., Meschenmoser K., Sona Svidov?, Weghuber J., Schweyen R., Eifler K., Lenz H., Weyand K., Knoop V.	A root-expressed magnesium transporter of the MRS2/MGT gene family in Arabidopsis thaliana allows for growth in low-Mg2+ environments.	Plant Cell	21(12)	4018-30	2009	MRS2-8,MRS2-6,MRS2-1,MRS2-9,MRS2-3,MRS2-5,MRS2-7,MRS2-4,MRS2-2	OsMRS2-8,OsMRS2-6, OsMGT3, MGT3,OsMGT, OsMRS2-1,OsMRS2-9,OsMRS2-3,OsMRS2-5,OsMRS2-7,OsMGT6, OsMRS2-4,OsMGT1, OsMRS2-2, MGT1
37549	11489171	S Choe, S Fujioka, T Noguchi, S Takatsuto, S Yoshida, K A Feldmann	Overexpression of DWARF4 in the brassinosteroid biosynthetic pathway results in increased vegetative growth and seed yield in Arabidopsis.	Plant J.	26(6)	573-82	2001		
37550	20381393	Wu L., Zhou H., Zhang Q., Zhang J., Ni F., Liu C., Qi Y.	DNA methylation mediated by a microRNA pathway.	Mol. Cell	38(3)	465-75	2010	AGO1A,AGO4A,MIR820A,MIR820B,MIR820C,AGO1B,AGO16,RDR2,DCL3A,DCL1,AGO4B,AGO1C	OsAGO1a, AGO1a, AGO10, AGO1-1 ,OsAGO4a, AGO4-2,miR820a, osa-miR820a, osa-MIR820a, OsmiR820a,miR820b, osa-miR820b, osa-MIR820b, OsmiR820b,miR820c, osa-miR820c, osa-MIR820c, OsmiR820c,OsAGO1b, AGO1b, AGO1-2 ,OsAGO16, OsAGO6, ZP1,OsRDR2,OsDCL3a,Dcl1, OsDCL1, osDCL1, Os-DCL1, OsDCL1a, DCL1a,OsAGO4b, AGO4-1 ,OsAGO1c, OsAGO1, AGO1, AGO1c
37551	16668962	M Wada, M Takano, K Kasamo	Nucleotide Sequence of a Complementary DNA Encoding Plasma Membrane H-ATPase from Rice (Oryza sativa L.).	Plant Physiol.	99(2)	794-5	1992	AHA1	OSA1, OsA1, osAHA1, AHA1
37552	11706167	H Yang, Y Matsubayashi, K Nakamura, Y Sakagami	Diversity of Arabidopsis genes encoding precursors for phytosulfokine, a peptide growth factor.	Plant Physiol.	127(3)	842-51	2001	PSK4,PSK	OsPSK4, Psk4,OsPSK, PSK-alpha, PSK-beta
37553	10734215	H Hanai, D Nakayama, H Yang, Y Matsubayashi, Y Hirota, Y Sakagami	Existence of a plant tyrosylprotein sulfotransferase: novel plant enzyme catalyzing tyrosine O-sulfation of preprophytosulfokine variants in vitro.	FEBS Lett.	470(2)	97-101	2000	PSK	OsPSK, PSK-alpha, PSK-beta
37554	2103449	D McElroy, M Rothenberg, K S Reece, R Wu	Characterization of the rice (Oryza sativa) actin gene family.	Plant Mol. Biol.	15(2)	257-68	1990	_,ACT1,AC7,_	RAc3,act1, AC1, RAC1, RAc1, ACT11, OsACT1,RAc7, OsAc7,RAc2
37555	23985993	Takai T., Adachi S., Taguchi-Shiobara F., Sanoh-Arai Y., Iwasawa N., Yoshinaga S., Hirose S., Taniguchi Y., Yamanouchi U., Wu J., Matsumoto T., Sugimoto K., Kondo K., Ikka T., Ando T., Kono I., Ito S., Shomura A., Ookawa T., Hirasawa T., Yano M., Kondo M., Yamamoto T.	A natural variant of nal1, selected in high-yield rice breeding programs, pleiotropically increases photosynthesis rate.	Sci Rep	3	2149	2013	NAL1	nal1, cul1, GPS, SPIKE, SPIKE/LSCHL4/NAL1/GPS, SPIKE/NAL1, LSCHL4, OsNAL1
37556	0	SATO T., L.-H. WU, NAGANO H., KISHIMA Y., SANO Y.	Rice EPSP synthase gene resides 45-kb downstream of the Waxy gene	RGN	16		1999	EPSPS,WX1,RPS40	EPSPs, OsEPSPS,wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx,rps40
37557	12723603	Ngampanya B., Sobolewska A., Takeda T., Toyofuku K., Narangajavana J., Ikeda A., Yamaguchi J.	Characterization of rice functional monosaccharide transporter, OsMST5.	Biosci. Biotechnol. Biochem.	67(3)	556-62	2003	MST5	OsMST5, OsSTP5, STP5
37558	11851910	S Kimura, T Suzuki, Y Yanagawa, T Yamamoto, H Nakagawa, I Tanaka, J Hashimoto, K Sakaguchi	Characterization of plant proliferating cell nuclear antigen (PCNA) and flap endonuclease-1 (FEN-1), and their distribution in mitotic and meiotic cell cycles.	Plant J.	28(6)	643-53	2001	FEN1,PCNA	OsFEN1, OsFEN-1a, FEN-1,OsPCNA
37560	18378529	Shan-Guo Yao, Ohmori S., Kimizu M., Yoshida H.	Unequal genetic redundancy of rice PISTILLATA orthologs, OsMADS2 and OsMADS4, in lodicule and stamen development.	Plant Cell Physiol.	49(5)	853-7	2008	SPW1,MADS4,MADS2	SPW1, spw1, MADS16, OsMADS16,OsMADS4, PI1, DLN140, OsDLN140,OsMADS2, RMADS219, NMADS1, PI2, nmads1, DLN33, OsDLN33
37561	24120393	Cai J., Yang L., He H.J., Xu T., Liu H.B., Wu Q., Ma Y., Liu Q.H., Nie M.H.	Antioxidant capacity responsible for a hypocholesterolemia is independent of dietary cholesterol in adult rats fed rice protein.	Gene	533(1)	57-66	2014		
37562	24145399	Yang S., Li J., Zhang X., Zhang Q., Huang J., Chen J.Q., Hartl D.L., Tian D.	Rapidly evolving R genes in diverse grass species confer resistance to rice blast disease.	Proc. Natl. Acad. Sci. U.S.A.	110(46)	18572-7	2013		
37563	24122830	Li X., Chang Y., Xin X., Zhu C., Li X., Higgins J.D., Wu C.	Replication Protein A2c Coupled with Replication Protein A1c Regulates Crossover Formation during Meiosis in Rice.	Plant Cell	25(10)	3885-99	2013	RPA1C,RPA2C,RAD21-4,RMC1,PAIR2	RPA1c, OsRPA1c,RPA2c, OsRPA2c,OsRad21-4, REC8, OsREC8, OsRAD21-4,MER3, mer3, OsMER3, RCK, OsRCK, Os-MER3,Pair2, OsPAIR2, OsASY1
37564	24065816	Houston K., McKim S.M., Comadran J., Bonar N., Druka I., Uzrek N., Cirillo E., Guzy-Wrobelska J., Collins N.C., Halpin C., Hansson M., Dockter C., Druka A., Waugh R.	Variation in the interaction between alleles of HvAPETALA2 and microRNA172 determines the density of grains on the barley inflorescence.	Proc. Natl. Acad. Sci. U.S.A.	110(41)	16675-80	2013		
37565	24048471	Bretschneider T., Heim J.B., Heine D., Winkler R., Busch B., Kusebauch B., Stehle T., Zocher G., Hertweck C.	Vinylogous chain branching catalysed by a dedicated polyketide synthase module.	Nature	502(7469)	124-8	2013		
37566	24104565	Martis M.M., Zhou R., Haseneyer G., Schmutzer T., Vr?na J., Kubal?kov? M., K?nig S., Kugler K.G., Scholz U., Hackauf B., Korzun V., Sch?n CC., Dolezel J., Bauer E., Mayer K.F., Stein N.	Reticulate evolution of the rye genome.	Plant Cell	25(10)	3685-98	2013		
37567	24170127	Lu Z., Yu H., Xiong G., Wang J., Jiao Y., Liu G., Jing Y., Meng X., Hu X., Qian Q., Fu X., Wang Y., Li J.	Genome-Wide Binding Analysis of the Transcription Activator IDEAL PLANT ARCHITECTURE1 Reveals a Complex Network Regulating Rice Plant Architecture.	Plant Cell	25(10)	3743-59	2013	WFP,PCF1,LOG1,MADS56,FTL1,PCF2,PIN1B,SLR1,FC1,DEP1	OsSPL14, SPL14, IPA1, WFP/IPA1, OsSPL14/WFP/IPA1, OsIPA1,  IPA1/OsSPL14,OsPCF1,OsLOG1, LOG, Log, log, OsLOG,OsMADS56, FDRMADS8, RMADS214,FTL, FT-L1, OsFTL1, FTL1,OsPCF2,PIN1A, OsPIN1A, OsPIN1a, REH1, OsPIN1, OsPIN1b, REH1/OsPIN1,slr1-1, slr1, slr, GAI, OsGAI, OsSLR1, Os SLR1, OsRGA1, OsGRAS-18, OsGRAS-18, GRAS-18, GRAS18, SLR-1,fc1, OsTB1, tb1, OsTB1/FC1, Os TB1, TB1, OsFC1, MP3, OsMP3,OsDEP1, EP, qPE9-1, DN1, DEP1/DN1/qPE9-1, qNGR9, qDEP1, RGG4/DEP1/DN1/qPE9-1/OsGGC3, RGG4, OsDN1, OsGGC3, GGC3
37568	24043799	Delmas F., Sankaranarayanan S., Deb S., Widdup E., Bournonville C., Bollier N., Northey J.G., McCourt P., Samuel M.A.	ABI3 controls embryo degreening through Mendel's I locus.	Proc. Natl. Acad. Sci. U.S.A.	110(40)	E3888-94	2013		
37569	24120898	Zhang K.J., Zhu W.C., Rong X., Liu J., Ding X.L., Hong X.Y.	The complete mitochondrial genome sequence of Sogatella furcifera (Horv?th) and a comparative mitogenomic analysis of three predominant rice planthoppers.	Gene	533(1)	100-9	2014		
37570	24127586	Zhu X., Xiong L.	Putative megaenzyme DWA1 plays essential roles in drought resistance by regulating stress-induced wax deposition in rice.	Proc. Natl. Acad. Sci. U.S.A.	110(44)	17790-5	2013	LACS8,GL1-2,DWA1,GELP112,WSL1,ERF3,LACS7,LTR1,WDA1	OsLACS8,OsGL1-2, WAX2, OsWAX2,DWA1,OsGELP112, WDL1,OsWSL1, FAE', OsFAE1', OsCER6, CER6, OsKCS17, KCS17,Os02ERF, OsSHN1, OsWR1, WR1, OsERF#003, OsERF003, OsERF3, AP2/EREBP#012, AP2/EREBP12,OsLACS7,OsCER1, CER1, OsGL1-4, GL1-4, Os CER1, OsLTR1,OsWDA1, Wda1, wda1, OS-CER1, OsGL1-5
37571	24096344	Jabnoune M., Secco D., Lecampion C., Robaglia C., Shu Q., Poirier Y.	A Rice cis-Natural Antisense RNA Acts as a Translational Enhancer for Its Cognate mRNA and Contributes to Phosphate Homeostasis and Plant Fitness.	Plant Cell	25(10)	4166-82	2013	PHO1;2 CIS-NAT,PHO1;2	OsPHO1;2 cis-NAT, cis-NAT PHO1;2, cisNATpho1.2, cis-NATpho1.2,OsPHO1;2, PHO1.2, OsPHO1.2, PHO1
37572	24035516	Park H.L., Lee S.W., Jung K.H., Hahn T.R., Cho M.H.	Transcriptomic analysis of UV-treated rice leaves reveals UV-induced phytoalexin biosynthetic pathways and their regulatory networks in rice.	Phytochemistry	96	57-71	2013	DXS3,MSRMK2,COMT20,_,2ODD2,_,SK2,_,PAL,_,COMTL2,_,_,_,WRKY46,_,_,_,CM,CS,DFR4,CHI6,SK1,HSFB2B,MRLK26,ASB2,MCS,_,NTMC2T6.2,CYP71Z7,CYP76M8,DFR5,GDI4,GRY340,TSA,CDPK8,DXR,TDD1,PKS12,TDC1,CHI7,CPS2,PKS2,IGPS,MRLK48,2ODD17,_,MPK6,CRO1,CYP99A2,CYP99A3,CDPK24,CHS,ROMT9,MAPK4,PAL1,4CL3,DNRL1,ASMT1	OsDXS, OsDXS3, dxs3, DXS2, OsDXS2,OsMSRMK2, OsMAPK5, OsMAP1, OsMPK3, OsBIMK1, OsMAPK2, MPK5, BIMK1, MAPK2, MAPK5, MPK3, OsMPK5, OsMAPK3, OsMAPK5b, MAPK3,OMT, OsCOMT20,DHQDT/SDH,FLS, 2-ODD2, Os2-ODD2, Os2ODD2, OsF3H, F3H, F3H2, OsF3H2, OsF3H03g, F3H03g, OsSAH1, SAH1, OsF3H1, F3H1,ADT,OsSK2,TS,OsPAL, OsPAL08, PAL2, GP-28, GP28, PAL08, OsPAL2, OsPAL8, PAL8,,OsCOMTL2, OsCOMT3, COMT3,,OsRab8A3,OsRab11C3,OsWRKY46, WRKY91, OsWRKY91,DHQS, OsDHQS,DHQDT/SDH, OsDHQDT/SDH, OsDHQDT, OsSDH, DHQDT, SDH, DHQ/SDH-1,TS,OsCM,OsCS,DHFR, OsDFR4,CHI, OsCHI6, OsCHIL1, CHIL1,OsSK1,HSfB2b, OsHsfB2b, OsHsf-21, rHsf2, HSF2, HSF21, OsHSF21, OsHSF7,OsMRLK26,OASB2, OsASB2, TRP4, OsTRP4,OsMCS, IspF, OsIspF, OsMDS, MDS,OsC4H, C4H ,OsNTMC2T6.2, OsC2DP15, C2DP15,Oscyp71Z7, OsCYP71Z6, CYP71Z6,OsCYP76M8, OsCYP76-3, CYP76-3,DHFR, OsDFR5,OsGDI4,OsCMK, CMK, OsIspE, IspE, OsGRY340, AL4, OsAL4,OsTSA, pOsTSA, TSbeta, TSA1, OsTSA1,OsCDPK8, OsCPK8,OsDXR, OsIspC, IspC,OsTDD1, ASB1, OASB1, OsASbeta1, ASbeta1, TDD1/OASB1,CHS, OsPKS12, OsCHS12, CHS12,OsTDC, TDC, TDC2, OsTDC1, OsTDC4,CHI, OsCHI, OsCHI7, OsCHIL2, CHIL2,OsCPS2, cps2, OsCPS2ent, CYC2, OsCyc2, OsCYC2, OsCPSL1, cpsl1, OsCyc2/OsCPS2, OsTPS7, Os-CPS2, TPS13, OsTPS13,CHS, OsPKS02, OsPKS2, PKS02, OsCHS2, CHS2,OsIGPS, TRPC, OsTRPC,OsMRLK48,FLS, 2-ODD17, Os2-ODD17, Os2ODD17, OsFLS3, FLS3,DHFR, OsDFR3, DFR3,OsMPK6, OsDR6, DR6, OsMPK4, MPK4, OsMAPK4, MAPK4,OsCRO1, CRT, CRT-1, OsCRT-1, OsCRT1, CRT1,OsCYP99A2,OsCYP99A3,OsCDPK24, OsCPK24, OsCDPK14, CPK24,CHS*, Oschs, chs, chas, OsCHS, OsCHS1, CHS1, OsPKS26, PKS26, OsCHS24, CHS24, OsCHS27, CHS27,COMT, OsCOMT, ROMT-9, OsCOMT1, OsCAldOMT1, CAldOMT1, OsOMT, OsCOMT15, COMT15,OsMAPK4, OsMAP2, OsMSRMK3, OsMPK4, OsMPK7, MAP2, MSRMK3, MPK4, MPK7, MAPK7, OsMAPK7,OsPAL, Pal1*, Pal1, PAL, Pal_1, PalI, PAL2, OsPAL01, PAL01, OSPAL, CP-1, GP-1, OsPAL1, PAL3, OsPAL3,Os4CL3, Os4CL2, Os4CL, 4CL2, 4CL,OsDAHP1, DAHP1, DAHPS, OsDAHPS2, DAHPS2, OsDNRL1,ZRP4, OMT, ASMT, OsASMT, OsASMT1, ASMT1, OsASMT13, OsCOMT19, COMT19
37573	24045020	Xia T., Li N., Dumenil J., Li J., Kamenski A., Bevan M.W., Gao F., Li Y.	The Ubiquitin Receptor DA1 Interacts with the E3 Ubiquitin ligase DA2 to Regulate Seed and Organ Size in Arabidopsis.	Plant Cell	25(9)	3347-59	2013	GW2	OsGW2, OsRING429, RING429, GNL44, OsGNL44
37574	24003150	Ye M., Song Y., Long J., Wang R., Baerson S.R., Pan Z., Zhu-Salzman K., Xie J., Cai K., Luo S., Zeng R.	Priming of jasmonate-mediated antiherbivore defense responses in rice by silicon.	Proc. Natl. Acad. Sci. U.S.A.	110(38)	E3631-9	2013	AOS2,LSI2,COI1,LSI1,DSG1,WRKY70,RBBI3-3,WRKY53,LSI6,MSRMK2	OsAOS2, CYP74A2, OsAOS, OsAOS1,Lsi2, SIET1, OsLsi2, OsSIET1,OsCOI1a, OsCOI1, Os_F0728, COI1a, F0728,  OsFBL4, FBL4,lsi1, NIP2-1, OsNIP2;1, NIP2;1, OsLsi1, lsi(t), OsNIP2.1/OsLsi1/OsSIIT1, OsNIP2.1, NIP2.1,OsMAPK6, MAPK6, OsMPK6, OsSIPK, SIPK, OsMAPK1, MAPK1, MPK1, OsMPK1, MPK6, OsDSG1,OsWRKY70,RBBI3-3, OsBBPI, BBPI, IBP1.2, OsIBP1.2, OsBBTI5, BBTI5,OsWRKY53, WRKY-53,Lsi6, OsNIP2;2, NIP2-2, OsLsi6, OsNIP2.2/OsLsi6, OsNIP2.2, NIP2.2,OsMSRMK2, OsMAPK5, OsMAP1, OsMPK3, OsBIMK1, OsMAPK2, MPK5, BIMK1, MAPK2, MAPK5, MPK3, OsMPK5, OsMAPK3, OsMAPK5b, MAPK3
37575	24052276	Alberts B., Beachy R., Baulcombe D., Blobel G., Datta S., Fedoroff N., Kennedy D., Khush G.S., Peacock J., Rees M., Sharp P.	Standing up for GMOs.	Science	341(6152)	1320	2013		
37576	24042130	Lu Y.C., Yang S.N., Zhang J.J., Zhang J.J., Tan L.R., Yang H.	A collection of glycosyltransferases from rice (Oryza sativa) exposed to atrazine.	Gene	531(2)	243-52	2013	_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,XYXT2,_,XXAT1,_,_,_,_,_,_,_,_,_,_,_,_,XYXT1,_,UGT703A4,UGT85E2,IRX9,RS5,XAX1,XAT4,_,AGA3,XAT5,UGT703A2,XAT6,RPN1,XAT7,RS3,IRX14,CUGT1,RS2,AGA1,_,_,_,_,_,UGT3,GT43I,XAT2,XAT3	,,,,,OsGT43E,,,,OsGT43A, GT43A,,OsGT2,OsGT4,OsXXT1, SRH2,,OsXYXT2,,OsXXAT1,,,,,,,,OsDGL1,,OsGT5,,OsGT6,OsXYXT1,,,,OsIRX9, OsGT43C/OsIRX9, OsGT43C,OsRS5, OsRS1, RS1,OsXAX1, OsGT61-1, GT61-1,OsXAT4,Rafs, OsRS2, RS2,OsAGA3, OsRS4, RS4,OsXAT5,OsUGT703A2,OsXAT6,OsRpn1,OsXAT7,Rafs, OsRS3,OsIRX14, OsGT43J, GT43J, OsGT43J/OsIRX14,OsCUGT1,OsRS2, OsRS5, RS5,Osh69, h69, OsAGA1, OsRS6, RS6,,OsGT43H,OsGT7,OsIRX9L, OsGT43F/OsIRX9L, OsGT43F,OsGT43G, GT43G, OsIRX9L, IRX9L,qRA2, OsUGT3,OsGT43I, OsGT43B, GT43B,OsXAT2,OsXAT3
37577	24035935	Zhao F., Li Q., Weng M., Wang X., Guo B., Wang L., Wang W., Duan D., Wang B.	Cloning of TPS gene from eelgrass species Zostera marina and its functional identification by genetic transformation in rice.	Gene	531(2)	205-11	2013		
37578	24077303	Xu S.	Mapping Quantitative Trait Loci by Controlling Polygenic Background Effects.	Genetics	195(4)	1209-22	2013		
37579	24076974	Luo J., Liu H., Zhou T., Gu B., Huang X., Shangguan Y., Zhu J., Li Y., Zhao Y., Wang Y., Zhao Q., Wang A., Wang Z., Sang T., Wang Z., Han B.	An-1 encodes a basic helix-loop-helix protein that regulates awn development, grain size, and grain number in rice.	Plant Cell	25(9)	3360-76	2013	OSH1,LOG1,GN1A,AN1,LABA1	OSKN1, Oskn1, OsKN1, OSH1/Oskn1, HB75,OsLOG1, LOG, Log, log, OsLOG,Gn1a, OsCKX2, CKX2, ckx2, Gn1a/OsCKX2, Os CKX2, CKX2/Gn1a,An-1, OsbHLH093, RAE1, An-1/RAE1, RAE1/An-1, OsRAE1, OsAn-1, OgRAE1,LOGL6, OsLOGL6, An-2
37580	24099390	Ren J., Yu Y., Gao F., Zeng L., Lu X., Wu X., Yan W., Ren G.	Application of resistance gene analog markers to analyses of genetic structure and diversity in rice.	Genome	56(7)	377-87	2013		
37581	24023067	Barboza L., Effgen S., Alonso-Blanco C., Kooke R., Keurentjes J.J., Koornneef M., Alc?zar R.	Arabidopsis semidwarfs evolved from independent mutations in GA20ox1, ortholog to green revolution dwarf alleles in rice and barley.	Proc. Natl. Acad. Sci. U.S.A.	110(39)	15818-23	2013		
37582	24037269	Wang C., Shi X., Liu L., Li H., Ammiraju J.S., Kudrna D.A., Xiong W., Wang H., Dai Z., Zheng Y., Lai J., Jin W., Messing J., Bennetzen J.L., Wing R.A., Luo M.	Genomic resources for gene discovery, functional genome annotation, and evolutionary studies of maize and its close relatives.	Genetics	195(3)	723-37	2013		
37583	24218619	Waters A.J., Bilinski P., Eichten S.R., Vaughn M.W., Ross-Ibarra J., Gehring M., Springer N.M.	Comprehensive analysis of imprinted genes in maize reveals allelic variation for imprinting and limited conservation with other species.	Proc. Natl. Acad. Sci. U.S.A.	110(48)	19639-44	2013		
37584	24191062	Zhang T., Talbert P.B., Zhang W., Wu Y., Yang Z., Henikoff J.G., Henikoff S., Jiang J.	The CentO satellite confers translational and rotational phasing on cenH3 nucleosomes in rice centromeres.	Proc. Natl. Acad. Sci. U.S.A.	110(50)	E4875-83	2013	DIRS1,CENH3	,OsCENH3, CenH3
37585	24285788	van Veen H., Mustroph A., Barding G.A., Vergeer-van Eijk M., Welschen-Evertman RA., Pedersen O., Visser E.J., Larive C.K., Pierik R., Bailey-Serres J., Voesenek L.A., Sasidharan R.	Two Rumex Species from Contrasting Hydrological Niches Regulate Flooding Tolerance through Distinct Mechanisms.	Plant Cell	25(11)	4691-707	2013		
37586	24280387	Li T., Chen X., Zhong X., Zhao Y., Liu X., Zhou S., Cheng S., Zhou D.X.	Jumonji C Protein JMJ705-Mediated Removal of Histone H3 Lysine 27 Trimethylation Is Involved in Defense-Related Gene Activation in Rice.	Plant Cell	25(11)	4725-36	2013	_,JMJ705,TPS13,SH11	PR10, OsPR10C, PR10C,OsJMJ705,TPS3, OsSTP3, OsTPS28, TPS28, OsTPS13, TPS35, OsTPS35, OsECBS, ECBS,OsJAmyb, JAmyb, OsJAMyb, OsMYB21, MYB21, Os2R_MYB91, 2R_MYB91, OgSH11, OsSH11
37587	24259710	Gong L., Chen W., Gao Y., Liu X., Zhang H., Xu C., Yu S., Zhang Q., Luo J.	Genetic analysis of the metabolome exemplified using a rice population.	Proc. Natl. Acad. Sci. U.S.A.	110(50)	20320-5	2013	SPL50,_,CYP93G2,_,_,SPL18,PL,CYP72A1,_	OsSPL50,OsMaT-1,OsCYP93G2, OsF2H, F2H, OsCYP71S1, CYP71S1,OsMaT-2,OsMaT-3,Spl18, OsAT1, AT1,OsMYB55, OsMYB-2, MYB55, MYB-2, OsPL, Os2R_MYB60, 2R_MYB60,CYP72A1,UGT
37588	24249833	Secco D., Jabnoune M., Walker H., Shou H., Wu P., Poirier Y., Whelan J.	Spatio-Temporal Transcript Profiling of Rice Roots and Shoots in Response to Phosphate Starvation and Recovery.	Plant Cell	25(11)	4285-304	2013	MIR399J,MIR399A,MIR399C,MIR399D,MIR399I,MIR399B,LTN1	OsmiR399j, osa-miR399j, osa-MIR399j, Os-miR399j, miR399j,OsmiR399a, osa-miR399a, osa-MIR399a, Os-miR399a, miR399a,OsmiR399c, osa-MIR399c, miR399c,OsmiR399d, osa-miR399d, osa-MIR399d, Os-miR399d, miR399d,OsmiR399i, osa-MIR399i, miR399i,OsmiR399b, osa-MIR399b, miR399b,LTN1, OsPHO2, PHO2.1, PHO2.2, PHO2, OsUBC35, UBC35
37589	23994683	Devi S.J., Madhav M.S., Kumar G.R., Goel A.K., Umakanth B., Jahnavi B., Viraktamath B.C.	Identification of abiotic stress miRNA transcription factor binding motifs (TFBMs) in rice.	Gene	531(1)	15-22	2013	MIR169E,MIR169g,MIR167B,MIR171C,MIR169F,MIR166M,MIR171F,MIR167C,MIR167A,MIR171D,MIR167F,MIR167G,MIR166K,MIR168B,MIR167I,MIR167J,MIR171E,MIR169H,MIR319A,MIR393,MIR156K,MIR167H,MIR397B,MIR167D,MIR171,MIR397A,MIR408	miR169e, osa-miR169e, osa-MIR169e,MIR-169g, osa-MIR169g,miR167b, osa-miR167b,miR171c, osa-miR171cosa-miR171c-3p osa-miR171c-5p,miR169f, osa-miR169f, osa-MIR169f, osa-miR169f.2,miR166m, osa-miR166m,miR171f, osa-miR171f, osa-miR171f-3p osa-miR171f-5p,miR167c, osa-miR167cosa-miR167c-3p osa-miR167c-5p,miR167a, osa-miR167aosa-miR167a-3p osa-miR167a-5p, OsmiR167a,miR171d, osa-miR171dosa-miR171d-3p osa-miR171d-5p,miR167f, osa-miR167f, osa-miRNA167f ,miR167g, osa-miR167g, osa-miRNA167g ,miR166k, osa-miR166kosa-miR166k-3p osa-miR166k-5p,miR168b, osa-miR168b, osa-MIR168b,miR167i, osa-miR167iosa-miR167i-3p osa-miR167i-5p,miR167j, osa-miR167j, osa-MIR167j,miR171e, osa-miR171e, osa-miR171e-3p, osa-miR171e-5p,miR169h, osa-miR169h, osa-MIR169h,OsmiR319a, Osa-miR319a, osa-MIR319aosa-miR319a osa-miR319a-3p osa-miR319a-3p.2-3p,OsmiR393, osa-MIR393, osa-MIR393a, OsmiR393a, miR393a ,miR156k, OsmiR156k, osmiR156k, osa-miR156k, osa-MIR156k,miR167h, osa-miR167h, osa-MIR167hosa-miR167h-3p osa-miR167h-5p,miR397b, osa-miR397b, osa-MIR397b, miR397b*, OsmiR397b, Os-MIR397b,miR167d, osa-miRNA167d, osa-miR167d, osa-miR167d-3p, osa-miR167d-5p,miR171, osa-miR171, miR171a, osa-miR171a, osa-MIR171a,miR397a, osa-miR397a, osa-MIR397a, OsmiR397a,miR408, osa-MIR408osa-miR408 osa-miR408-3p osa-miR408-5p, OsMIR408 
37590	23994682	Zhang X., Rerksiri W., Liu A., Zhou X., Xiong H., Xiang J., Chen X., Xiong X.	Transcriptome profile reveals heat response mechanism at molecular and metabolic levels in rice flag leaf.	Gene	530(2)	185-92	2013	_,BZIP4,_,RISBZ5,BZIP24,HMGRII,PSY2,MYB1,RPT5B,_,4CL4,_,HXK7,ALDH7,MDH8.1,4CL5,RISBZ1,PGK4,O3,BZIP50,MYB30,WRKY24,_	OsPAL04, PAL04, PAL, OsPAL7, PAL7,OsbZIP04, OsbZIP4,,OsbZIP52, bZIP52,OsbZIP24, OsFD3, FD3, bZIP24/OsFD3,HMGR II, OsHMGRII, Hmg2, HMGR2, HMGR 2, OsHMGR2, OsHMGR2, HMGR1, OsHMGR1,OsPSY2,OsMyb1, OSMYB1, R2R3-MYB, OsDLN141, DLN141, Os2R_MYB55, 2R_MYB55 ,OsRpt5b, Rpt5b,PFP, OscPGM, cPGM,Os4CL4,OsBCH2, BCH2, OsHYD1, HYD1,OsHXK7, OsHXK8,OsALDH7, osaldh7, LDH, ALDH7B7, OsALDH7B6, ALDH7B6, OsAnt1, Ant1,MDH, OsMDH8.1, OsLdh9, Ldh9,Os4CL5, 4CL3, Os4CL3,OsbZIP58, bZIP58, OsEnS-92, OsSMF1, SMF1, OsRISBZ1, RISBZ1/bZIP58,PGK, OsPGK4,OsbZIP60, bZIP60,OsbZIP60, bZIP50, OsbZIP50, OsbZIP74, bZIP74, OsbZIP50-S,OsMYB30, OsMYB5P, MYB5P, OsMYB13a, MYB13a, Os2R_MYB26, 2R_MYB26, OsMYB30C, MYB30C,OsWRKY24,OsMaT-2
37591	24033867	Cheng X., Wu Y., Guo J., Du B., Chen R., Zhu L., He G.	A rice lectin receptor-like kinase that is involved in innate immune responses also contributes to seed germination.	Plant J.	76(4)	687-98	2013	CHS,BPH15,AMY1C,ADF4,PR1A,AMY1A,_,AMY3D	CHS*, Oschs, chs, chas, OsCHS, OsCHS1, CHS1, OsPKS26, PKS26, OsCHS24, CHS24, OsCHS27, CHS27,RLCK134, OsRLCK134, OsLecRK1, LecRK1, SDRLK-LecRK1, OsSDRLK-LecRK1, OslecRK, lecRK, Bph15, OsBph15, Bph15 (Qbp2), Qbp2, qBPH-4,Amy1A/C*(RAmy1A/C), alpha Amy10, Amy1C, RAmy1A/C, Amy1A/C*, Amy3, RAmy1C, OsAmy1C, alphaAmy10-C,OsADF4, OsADF,OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1, OsPR1b, PR1alpha, OsPR1alpha,Amy1A/C*(RAmy1A/C), alpha Amy7, AMY1.1, Amy1A, RAmy1A/C, Amy1A/C*, Amy1, Amy1A_C, OsAmy1A, alphaAmy7-C, RAmy1A, AmyI-1, OsAmyI-1, OsRamy1A,Lox2:Os:1, OsLOX9, LOX9, OsLOX8, LOX8, OsLOX2, LOX2, OsRLL, OsHI-LOX, HI-LOX, RLL2 LOX, RLL2, Lox2osPil, OsLOX2;1, LOX2;1, OsLOX1, OsLOX7, LOX7,Amy3D/E*(RAmy3D/E), alpha Amy3, AmyII-4, AMY1.3, Amy3D, Amy3D/E*, RAmy3D/E, Amy3D_E, Amy8, aAmy3, RAmy3D, OsAmy3D, alphaAmy3, OsRamy3D
37592	24153418	Ohta M., Wakasa Y., Takahashi H., Hayashi S., Kudo K., Takaiwa F.	Analysis of rice ER-resident J-proteins reveals diversity and functional differentiation of the ER-resident Hsp70 system in plants.	J. Exp. Bot.	64(18)	5429-41	2013	_,ERDJ3B,_,_,_,_,BZIP39,BIP1,O3	OsERdj3A, TMS1,OsDjB6, OsERdj3B, ERdj3B,OsDjC16, OsP58A,OsDjC79, OsERdj7,OsDjC15, OsP58B,OsDjC43, OsERdj2,OsbZIP39, bZIP39, DLN138, OsDLN138,OsBiP1, BiP1, BiP, Bip3, OsBiP3, BIP1/OsBIP3, OsMed37_2, Med37_2 ,OsbZIP60, bZIP60
37593	24205207	Zhang X.Y., Nie Z.H., Wang W.J., Leung D.W., Xu da G., Chen B.L., Chen Z., Zeng L.X., Liu E.E.	Relationship between disease resistance and Rice Oxalate Oxidases in Transgenic Rice.	PLoS ONE	8(10)	e78348	2013	OXO3,OXO4,OXO1,OXO2	OsOxO3, OsGLP3-5, GLP3-5, OsCDP3.8, CDP3.8,OsOxO4, OsGLP3-6, GLP3-6, OsCDP3.9, CDP3.9,OsOxO1, OsGLP3-3, GLP3-3, OsCDP3.6, CDP3.6,Osoxo4, OsOxO2, OsGLP3-4, GLP3-4, OsCDP3.7, CDP3.7
37594	24215658	Lim S.D., Lee C., Jang C.S.	The rice RING E3 ligase, OsCTR1, inhibits trafficking to the chloroplasts of OsCP12 and OsRP1, and its overexpression confers drought tolerance in Arabidopsis.	Plant Cell Environ.			2013	_,_,CYP94C4,_,_,_,DNRL1,_,RBBI3-1	OsXYLA1,OsMASP1,OsCYP94C4,OsCP12,OsRP1,OsCTR1,  OsRING325, RING325,OsDAHP1, DAHP1, DAHPS, OsDAHPS2, DAHPS2, OsDNRL1,OsEE1, OsENO1, ENO1, OsEno7, Eno7, OsEno4, Eno4,RBBI3-1, OsBBTI4, BBTI4, IBP1.1, RBBTI4, APIP4, OsAPIP4
37595	24124527	Ma N., Wang Y., Qiu S., Kang Z., Che S., Wang G., Huang J.	Overexpression of OsEXPA8, a Root-Specific Gene, Improves Rice Growth and root system Architecture by Facilitating Cell Extension.	PLoS ONE	8(10)	e75997	2013	EXPA8	OsEXPA8, OsEXP8, osaEXPa1.17
37596	24103920	Hwang H., Yoon J.Y., Cho H., Kim B.G.	OsKAT2 is the prevailing functional inward rectifier potassium channels in rice guard cell.	Plant Signal Behav	8(12)	e26643	2013	KAT2	OsKAT2
37597	24128296	Huda K.M., Banu M.S., Garg B., Tula S., Tuteja R., Tuteja N.	OsACA6, a P-type IIB Ca(2+) ATPase promotes salinity and drought stress tolerance in tobacco by ROS scavenging and enhancing the expression of stress-responsive genes.	Plant J.	76(6)	997-1015	2013	ACA11	osACA11, OsACA6, OsACA5, OsPM4ATP8
37598	24034348	Long T., Guo D., He D., Shen W., Li X.	The tRNA 3'-end Processing Enzyme tRNase Z2 Contributes to Chloroplast Biogenesis in Rice.	J Integr Plant Biol	55(11)	1104-18	2013	TRZ2,TRZ2	OsaTRZ2, OsTRZ2,OsaTRZ2, OsTRZ2
37599	24237159	Liu H., Ma Y., Chen N., Guo S., Liu H., Guo X., Chong K., Xu Y.	Overexpression of stress-inducible OsBURP16, the beta-subunit of polygalacturonase 1, decreases pectin contents and cell adhesion, and increases abiotic stress sensitivity in rice.	Plant Cell Environ.			2013	TPS8,BURP16,TPP1	OsTPS8, OsTPS1, TPS1,OsRD22, RD22, OsBURP16,OsTPP1, OsTPS, TPP
37600	24096889	Ubaidillah M., Kim K.A., Kim Y.H., Lee I.J., Yun B.W., Kim D.H., Loake G.J., Kim K.M.	Identification of a drought-induced rice gene, OsSAP, that suppresses Bax-induced cell death in yeast.	Mol. Biol. Rep.	40(11)	6113-21	2013	_	OsSAP
37601	24143807	Chen L.J., Wuriyanghan H., Zhang Y.Q., Duan K.X., Chen H.W., Li Q.T., Lu X., He S.J., Ma B., Zhang W.K., Lin Q., Chen S.Y., Zhang J.S.	An S-domain receptor-like kinase OsSIK2 confers abiotic stress tolerance and delays dark-induced leaf senescence in rice.	Plant Physiol.	163(4)	1752-65	2013	_,BCKDH,SIK2,_,HPPD,_,DREB1E,PR5,DREB1B,PR10B	prx60, POX-1,OsBCKDH,OsSIK2, YK14, SDRLK-SIK2, OsSDRLK-SIK2,prx109, POX-2,OsHPPD, Osl30, l30,OsPR1, OsPR1a, PR1a, PR1, OsPR1b, PR1b,OsDREB1E, OsERF030, OsERF#030, OsERF30, ERF30, AP2/EREBP#160, AP2/EREBP160, OsDREB1-1,OsPR5, Pir2, PR-5, PR5-1,OsDREB1B, ERF31, OsERF031, OsERF#031, OsERF31, AP2/EREBP#169, AP2/EREBP169, OsDREB1b, OsDREB1C, OsCBF1, CBF1,RPR10b, PR-10b, PR10b, PBZ1, PBZ-1, OsPBZc, OsPR10b, BetV, OsBetV
37602	24098302	Yoshida K., Sakamoto S., Kawai T., Kobayashi Y., Sato K., Ichinose Y., Yaoi K., Akiyoshi-Endo M., Sato H., Takamizo T., Ohme-Takagi M., Mitsuda N.	Engineering the Oryza sativa cell wall with rice NAC transcription factors regulating secondary wall formation.	Front Plant Sci	4	383	2013	NAC18,NAC82,NAC90,_,NAC31,NAC29,NAC56	ONAC018, ONAC18, OsSWN4,OsSWN6, ONAC082, ONAC82,OsSWN7, SWN7, ONAC090, ONAC90, VND6, VND4/5/6, OsVND6, OsVND4/5/6, DLN155, OsDLN155,ONAC007, ONAC7, OsSND1, SND1, OsSWN1, SWN1, DLN157, OsDLN157,ONAC031, ONAC31, OsSWN3,ONAC029, ONAC29, OsSWN2, OsSWN2L, OsSWN2S, OsNST1/2, SWN2, SWN2L, SWN2S, NST1/2, DLN201, OsDLN201,ONAC056, ONAC56, OsSWN5, SWN5
37603	24068795	Tanaka N., Uraguchi S., Saito A., Kajikawa M., Kasai K., Sato Y., Nagamura Y., Fujiwara T.	Roles of pollen-Specific Boron Efflux Transporter, OsBOR4, in the Rice Fertilization Process.	Plant Cell Physiol.	54(12)	2011-9	2013	BOR4	OsBOR4
37604	24085307	P?rez-D?az J., Wu T.M., P?rez-D?az R., Ru?z-Lara S., Hong C.Y., Casaretto J.A.	Organ- and stress-specific expression of the ASR genes in rice.	Plant Cell Rep.	33(1)	61-73	2013	ASR2,ASR4,RBLS2,ASR3,ASR4,ASR5	OsAsr2, OsASR4, ASR4, OsASR6, ASR6,Asr4, OsASR6, OsASR2, Asr2, OsASR1, ASR1,ASR1, OsAsr1, OsASR3, ASR3, Asr3, OsRBLS2,Asr3, OsASR5, OsASR1, Asr1,OsASR2, OsASR4, Asr4, ASR2, OsASR6, ASR6,OsASR5, Asr5, Asr1, OsASR1, OsASR2, ASR2
37605	24268167	Zheng J., Wang Y., He Y., Zhou J., Li Y., Liu Q., Xie X.	Overexpression of an S-like ribonuclease gene, OsRNS4, confers enhanced tolerance to high salinity and hyposensitivity to phytochrome-mediated light signals in rice.	Plant Sci.	214	99-105	2014	RNS4	OsRNS4, OsRRP, RNaseDIS
37606	24144792	Chen Y., Xu Y., Luo W., Li W., Chen N., Zhang D., Chong K.	The F-box protein OsFBK12 targets OsSAMS1 for degradation and affects leaf senescence and seed size in rice.	Plant Physiol.	163(4)	1673-85	2013	FBOX130,SAMS1,OSK1	OsFBK12, OsFbox130, Os_F0642,  OsFBK12, FBK12,OsSAMS1, OS-SAMS1, OsSAMS, SAM, SAMS,SKP1, OsSKP1
37607	24089432	Hirano K., Kondo M., Aya K., Miyao A., Sato Y., Antonio B.A., Namiki N., Nagamura Y., Matsuoka M.	Identification of transcription factors involved in rice secondary cell wall formation.	Plant Cell Physiol.	54(11)	1791-802	2013	_,CEF1,_,_,GH2,_,_	OsBLH6,OsMYB103, OsMYB103L, CEF1/OsMYB103L, MYB103, MYB103L, OsMYB93, MYB93, OsFC9, FC9, Os2R_MYB74, 2R_MYB74,OsMYB55/61, OsMYB55, MYB55, OsMYB61, MYB61, OsMYB61a, MYB61a, Os2R_MYB5, 2R_MYB5 ,OsMYB58/63, OsMYB58, OsMYB63, MYB58/63, MYB58, MYB63, OsMYB58/63b, MYB58/63b, Os2R_MYB51, 2R_MYB51,gh2, CAD2, CAD, OsCAD2, OsGH2 ,OsMYB42/85, MYB42/85, OsMYB85, MYB85, Os2R_MYB85, 2R_MYB85 ,ONAC007, ONAC7, OsSND1, SND1, OsSWN1, SWN1, DLN157, OsDLN157
37608	24152437	Tan C.M., Chen R.J., Zhang J.H., Gao X.L., Li L.H., Wang P.R., Deng X.J., Xu Z.J.	OsPOP5, A prolyl oligopeptidase Family Gene from Rice Confers Abiotic Stress Tolerance in Escherichia coli.	Int J Mol Sci	14(10)	20204-19	2013	_	OsPOP5, POP5
37610	24034337	Qi Z., Xiong L.	Characterization of a Purine Permease Family Gene OsPUP7 Involved in Growth and Development Control in Rice.	J Integr Plant Biol	55(11)	1119-35	2013	PUP2,PUP3,PUP5,PUP6,PUP8,PUP10,PUP11,PUP12,PUP1,PUP13,PUP4,PUP7	OsPUP2,OsPUP3,OsPUP5,OsPUP6,OsPUP8,OsPUP10,OsPUP11,OsPUP12,OsPUP1,OsPUP13,OsPUP4, BG3/OsPUP4, BG3, OsBG3,OsPUP7
37611	24157209	Sripinyowanich S., Chamnanmanoontham N., Udomchalothorn T., Maneeprasopsuk S., Santawee P., Buaboocha T., Qu L.J., Gu H., Chadchawan S.	Overexpression of a partial fragment of the salt-responsive gene OsNUC1 enhances salt adaptation in transgenic Arabidopsis thaliana and rice (Oryza sativa L.) during salt stress.	Plant Sci.	213	67-78	2013	NUC1	OsNUC1, OsNUC1-S, OsNUC1-L
37612	24042572	Zhao H.J., Cui H.R., Xu X.H., Tan Y.Y., Fu J.J., Liu G.Z., Poirier Y., Shu Q.Y.	Characterization of OsMIK in a rice mutant with reduced phytate content reveals an insertion of a rearranged retrotransposon.	Theor. Appl. Genet.	126(12)	3009-20	2013	_,MRP13,INO1,LPA1,ITPK3	OsMIK, LPA,OsABCC13, OsMRP13, OsMRP5,OsINO1, MIPS, IPS, RINO1, OsINO1-1, OsRINO1, OsMIPS1, MIPS1,Lpa1, OsLpa1, OsLpa1.1, OsLpa1.2, OsLpa1.3, Oslpa1, OsLpa1-3.1, OsLpa1-3.2, OsLpa1-3.3,OsITPK3, OsITP5/6K-3, ITP5/6K-3, OsIPK1
37613	24028154	Zhou Y., Huang W., Liu L., Chen T., Zhou F., Lin Y.	Identification and functional characterization of a rice NAC gene involved in the regulation of leaf senescence.	BMC Plant Biol.	13	132	2013	AOC,OG1,AOS2,NAC58,_	OsAOC, AOC1, OsAOC1, HB, CPM2, OsAOC4, AOC4,OsOPR7, OPR7, OsOPR13, OsOPR3, OsOPR5, OsOPR9, OsOPR08-1,  OPR13, OPR3, OPR5, OPR9, OPR08-1, OsOPR8, OPR8,OsAOS2, CYP74A2, OsAOS, OsAOS1,OsNAP, NAP, ONAC058, ONAC58, Os PS1, PS1, OsCTb1, CTb1,Lox2:Os:1, OsLOX9, LOX9, OsLOX8, LOX8, OsLOX2, LOX2, OsRLL, OsHI-LOX, HI-LOX, RLL2 LOX, RLL2, Lox2osPil, OsLOX2;1, LOX2;1, OsLOX1, OsLOX7, LOX7
37614	24111723	Wang S., Zhang S., Sun C., Xu Y., Chen Y., Yu C., Qian Q., Jiang D.A., Qi Y.	Auxin response factor (OsARF12), a novel regulator for phosphate homeostasis in rice (Oryza sativa).	New Phytol.	201(1)	91-103	2014	MIR399J,_,PI1,ARF8,miR827,SPX-MFS2 ,ARF6B,PHR2,SQD2.2,SPX-MFS1,TIR1,IPS1,LTN1,SPX1	OsmiR399j, osa-miR399j, osa-MIR399j, Os-miR399j, miR399j,OsMYB2P-1,OsIPS2, IPS2, OsPI1,OsARF8, OsARF12, ARF12,miR827a, OsmiR827a, miR827, osa-miR827, osa-MIR827, OsMiR827, miR827b, osa-miR827b, osa-MIR827b,OsSPX-MFS2,OsARF6b, OsARF25, ARF25,OsPHR2, Os-PHR2,OsSQD2, SQD2, OsSQD2.2,OsSPX-MFS1,OsTIR1, OsFbox248, Fbox248, Os_F071, AFB,  OsFBL21, FBL21,OsIPS1,LTN1, OsPHO2, PHO2.1, PHO2.2, PHO2, OsUBC35, UBC35,OsSPX1
37615	24078098	Ham D.J., Moon J.C., Hwang S.G., Jang C.S.	Molecular characterization of two small heat shock protein genes in rice: their expression patterns, localizations, networks, and heterogeneous overexpressions.	Mol. Biol. Rep.			2013	HSP16.9B,HSP18.0	Oshsp16.9B, OsHsp16.9B, HSP16.9B, OsHsp17.0, OsHSP16.9B-CI, OsHSP17.0, Hsp17.0, OsSHSP2, OsSTA3,OsHSP18.0-CI, HSP18.0-CI, OsHsp18.0, OsHSP18.0, Oshsp18.0, OsSHSP1, SHSP1, OsMSR3, MSR3, OsHSP20, HSP20, OsHSP18.6, HSP18.6
37616	24062085	Nakashima K., Jan A., Todaka D., Maruyama K., Goto S., Shinozaki K., Yamaguchi-Shinozaki K.	Comparative functional analysis of six drought-responsive promoters in transgenic rice.	Planta	239(1)	47-60	2014	LEA3-1,DHN1,HOX24,NAC6,WSI18,RAB16B	OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3, OsLEA3A, LEA3A,LIP9, OsLIP9, lip9, DHN1, DIP1, OsDip1, OsLEA23, OsDhn1, COR410, OsLEA23/DIP1, DIP1/OsLEA23,Oshox24, OsHox24, OsSLI1, OsHDZ6, OsHDZIP6, HDZ6, HDZIP6,OsNAC6, ONAC048, NAC48, SNAC2, SNAC2/OsNAC6, OsNAC6/ONAC048, OsSNAC2, SNAC-2, OsSNAC-2, OsNAC2,OsLEA14, OsLEA14a, OsLEA14b, wsi18, pwsi18, OsWsi18, OsLEA14/WSI18,rab21, OsLEA28, OsRAB16D, OsRab16d, Rab16d, OsRAB16b, XERO1, OsXERO1, OsRD22, RD22
37617	24064929	Deng F., Yamaji N., Xia J., Ma J.F.	A Member of the Heavy Metal P-type ATPase OsHMA5 Is Involved in Xylem Loading of Copper in Rice.	Plant Physiol.	163(3)	1353-62	2013	HMA5	OsHMA8, osHMA5, HMA8, OsHMP27, HMP27
37618	24014866	Kano A., Fukumoto T., Ohtani K., Yoshihara A., Ohara T., Tajima S., Izumori K., Tanaka K., Ohkouchi T., Ishida Y., Nishizawa Y., Ichimura K., Tada Y., Gomi K., Akimitsu K.	The rare sugar D-allose acts as a triggering molecule of rice defence via ROS generation.	J. Exp. Bot.	64(16)	4939-51	2013	RBOHA,_,_,G6PDH4,_,_,HXK6,HXK5,RBOHD,RBOHC,RBOHB	rbohA, OsrbohA, Os rbohA, OsRbohA, OsNox2, Nox2, OsRboh2, Rboh2,OsG6PDH1,OsG6PDH3, OsG6PDH2,OsG6PDH4,OsG6PDH5, G6PDH5,OsG6PDH2, OsG6PDH1, OsG6PDH,OsHXK6,OsHXK5,rbohD, OsrbohD, Os rbohD, OsRbohD, OsNox4, OsRboh4, Rboh4,rbohC, OsrbohC, Os rbohC, OsRbohC, OsNox5, Nox5, OsrbohD, OsRboh5, RBOHA, OsRboh5, Rboh5,rbohB, OsrbohB, Os rbohB, OsRbohB, OsNox1, Nox1, Os-RbohB, RbohB, OsRboh1, Rboh1
37619	24052265	Jamshidiha M., Ishida H., Sutherland C., Gifford J.L., Walsh M.P., Vogel H.J.	Structural Analysis of a Calmodulin Variant from Rice: THE C-TERMINAL EXTENSION OF OsCaM61 REGULATES ITS CALCIUM BINDING AND ENZYME ACTIVATION PROPERTIES.	J. Biol. Chem.	288(44)	32036-49	2013	CAM61	CaM61, OsCaM61, OsCML1, OsCML1d
37620	24033451	Svyatyna K., Jikumaru Y., Brendel R., Reichelt M., Mith?fer A., Takano M., Kamiya Y., Nick P., Riemann M.	Light induces jasmonate-isoleucine conjugation via OsJAR1-dependent and -independent pathways in rice.	Plant Cell Environ.	37(4)	827-39	2014	AOC,JAR2,TIFY10C,JAR1	OsAOC, AOC1, OsAOC1, HB, CPM2, OsAOC4, AOC4,OsJAR2, OsGH3.3, GH3.3, OsGH3-3, JAR2/GH3-3, GH3-3, OsGH3.3/OsJAR2,OsJAZ7, JAZ7, OsJAZ 8, OsJAZ8, Os-JAZ8, JAZ8, OsTIFY10c, OsTIFY10c/OsJAZ8,OsJAR1, OsGH3.5, GH3.5, OsGH3-5, GH3-5
37621	23938390	Singh S., Giri M.K., Singh P.K., Siddiqui A., Nandi A.K.	Down-regulation of OsSAG12-1 results in enhanced senescence and pathogen-induced cell death in transgenic rice plants.	J. Biosci.	38(3)	583-92	2013	_,_,_,_,_,_,_,CP1,SAG12-2,REP1	,,,,,OsSAG12, SAG12,,OsCP1, Os CP1,CP, OsSAG12-2,REP-1, OsREP-1, OsREP1, OsSAG12-1, SAG12-1, OsEnS-21
37622	24014863	Yang A., Li Y., Xu Y., Zhang W.H.	A receptor-like protein RMC is involved in regulation of iron acquisition in rice.	J. Exp. Bot.	64(16)	5009-20	2013	NAAT1,RMC,IRO2,NAS2,DMAS1,IRT1,YSL15,NAS1	OsNAAT1,OsRMC, OsRLK, OsDUF26, DUF26, OsCBMIP, CBMIP, NCS, OsNCS, OsCRK5, CRK5,OsIRO2, OsbHLH056, bHLH056, bHLH56, OsbHLH56,OsNAS2, OsNAS1,OsDMAS1, OsAKR5, AKR5,OsIRT1, ZIP10, OsZIP10, OsZIP12, ZIP12,OsYSL15, OsYs7,OsNAS1
37623	24020752	Li S., Zhou B., Peng X., Kuang Q., Huang X., Yao J., Du B., Sun M.X.	OsFIE2 plays an essential role in the regulation of rice vegetative and reproductive development.	New Phytol.	201(1)	66-79	2014	QHB,FIE1,FIE2	OsQHB, OsWOX9, WOX9, WOX5, Os WOX5, OsWOX5, QHB/OsWOX9,OsFIE1, OsWD40-154, OsEnS-116, OsFIE1/OsWD40-154, WD40-154 ,OsFIE2, FIE, OsWD40-153,  OsDWD46, DWD46
37624	24268160	Lin D.G., Chou S.Y., Wang A.Z., Wang Y.W., Kuo S.M., Lai C.C., Chen L.J., Wang C.S.	A proteomic study of rice cultivar TNG67 and its high aroma mutant SA0420.	Plant Sci.	214	20-8	2014	_,_,_,_,_,_,_,_	OsGAPDH1,OsGAPDHA, OsGAPDH4,OsGAPDH2,OsGAPDH5,OsGAPDH6,OsGAPDH7,OsGAPDH8, NP-GAPDH,GADPH, OsGAPDHB, GAPDHB, OsGAPB, GAPB
37625	24006427	Wang Q., Zhang W., Yin Z., Wen C.K.	Rice CONSTITUTIVE TRIPLE-RESPONSE2 is involved in the ethylene-receptor signalling and regulation of various aspects of rice growth and development.	J. Exp. Bot.	64(16)	4863-75	2013	_,_,CTR2	OsCTR1, CTR1,OsCTR3, CTR3,OsCTR2
37626	24265852	Trivedi D.K., Ansari M.W., Tuteja N.	Multiple abiotic stress responsive rice cyclophilin: (OsCYP-25) mediates a wide range of cellular responses.	Commun Integr Biol	6(5)	e25260	2013	CYP27,CYP20,CYP7,CYP17,CYP19-3,CYP18-1,CYP18-4,CYP21-1,CYP22,CYP23,CYP26-2,CYP28,CYP40A,CYP40B,CYP59A,CYP59B,CYP63,CYP65,CYP71,CYP57,CYP18-2,CYP20-1,CYP21-4,CYP95,CYP20-3,CYP19-4,LRT2,CYP20-2	OsCYP-27,OsCYP-20,OsCYP-7,OsCYP17, OsCYP-4,OsCYP19-3, Cyp1, OsCYP-25, OsCYP19-2a, OsCYP19-2b,OsCYP18-1, OsCYP-12,OsCYP18-4, OsCYP-26, OsCYP18-3,OsCYP21-1, OsCYP-24,OsCYP22, OsCYP-10,OsCYP23, OsCYP-28, OsCYP23a, OsCYP23b, OsCYP23c,OsCYP26-2, OsCYP-1, OsCYP26-1,OsCYP28, OsCYP-21, OsCYP28a, OsCYP28b, OsCYP28c, OsCYP28d,OsCYP40a, OsCYP-13, OsCYP40-1a, OsCYP40-1b,OsCYP40b, OsCYP-8, OsCYP40-2,OsCYP59a, OsCYP-14, OsCYP59-1,OsCYP59b, OsCYP-15, OsCYP59-2,OsCYP63, OsCYP-18,OsCYP65, OsCYP-9,OsCYP71, OsWD40-164, OsCYP-22, OsCYP71a, OsCYP71b,OsCYP57, OsCYP-3, OsCYP57a, OsCYP57b,OsCYP18-2, OsCYP-23, OsCYP18-2a, OsCYP18-2b, OsCYP18-2c, SIP12 ,OsCYP20-1, OsCYP-17, OsCYP20-1a, OsCYP20-1b,OsCYP21-4, OsCYP-19, OsCYP21-2a, OsCYP21-2b, OsCYP21-2c,OsCYP95, OsCYP-6, OsCYP95a, OsCYP95b,OsCYP20-3, OsCYP-5,OsCYP19-4, OsCYP-16, OsCYP19-3, OsCYP19-4.1, OsCYP19-4.2, OsCYP19-4.3, OsCYP19-4.4, OsCYP19-4.5, OsCYP19-4.6, OsCYP19-4.7, OsCYP19-4.8,CYC2, cyc2*, cyc2, OsCYP2, Cyp2, OsCYP19-2, CYP19-2, OsCYP-2, OsCyp2-P, OsCyp2, OsCYP19-1, LRT2/OsCYP2, lrt2*, lrt2, Ppcti ,OsCYP20-2, OsCYP-11, OsNuCYP20-2
37627	24019919	Cheong H., Kim C.Y., Jeon J.S., Lee B.M., Sun Moon J., Hwang I.	Xanthomonas oryzae pv. oryzae type III effector XopN targets OsVOZ2 and a putative thiamine synthase as a virulence factor in rice.	PLoS ONE	8(9)	e73346	2013	VOZ2,DR8	OsVOZ2,OsDR8, OsXNP, FOXRED1
37628	24254313	Morita K., Hatanaka T., Misoo S., Fukayama H.	Unusual Small Subunit, OsRbcS1, that is not Expressed in Photosynthetic Cells Alters the Catalytic Properties of Rubisco in Rice.	Plant Physiol.	164(1)	69-79	2014	RBCS4,RBCS1,RBCS3,RBCS5,RBCS	RbcS, RbcS4, OsRBCS4, OsRbcS4,RbcS1, OsRBCS1, OsRbcS1,RbcS3, OsRBCS3, OsRbcS3, rbcS ,RbcS5, OsRBCS5, OsRbcS5, RbcS3, OsRbcS3,rbcS, OsRbcS, RBCS-C, RbcS2, OsRBCS2, RbcS1, OsRbcS2, OsrbcS1
37629	24223786	Sumiyoshi M., Nakamura A., Nakamura H., Hakata M., Ichikawa H., Hirochika H., Ishii T., Satoh S., Iwai H.	Increase in cellulose accumulation and improvement of saccharification by overexpression of arabinofuranosidase in rice.	PLoS ONE	8(11)	e78269	2013	_,_,_,_,_	OsARAF1,OsARAF2,OsARAF4,OsARAF5,OsARAF3
37630	24163402	Kunihiro S., Saito T., Matsuda T., Inoue M., Kuramata M., Taguchi-Shiobara F., Youssefian S., Berberich T., Kusano T.	Rice DEP1, encoding a highly cysteine-rich G protein gamma subunit, confers cadmium tolerance on yeast cells and plants.	J. Exp. Bot.	64(14)	4517-27	2013	DEP1	OsDEP1, EP, qPE9-1, DN1, DEP1/DN1/qPE9-1, qNGR9, qDEP1, RGG4/DEP1/DN1/qPE9-1/OsGGC3, RGG4, OsDN1, OsGGC3, GGC3
37631	24189206	Nuruzzaman M., Sharoni A.M., Satoh K., Kumar A., Leung H., Kikuchi S.	Comparative transcriptome profiles of the WRKY gene family under control, hormone-treated, and drought conditions in near-isogenic rice lines reveal differential, tissue specific gene activation.	J. Plant Physiol.	171(1)	2-13	2014	WRKY68,WRKY105,WRKY96,WRKY29,WRKY84,WRKY43,WRKY115,WRKY9,WRKY75,WRKY3,WRKY102,WRKY11,WRKY42	OsWRKY68,OsWRKY105,OsWRKY96,OsWRKY29,OsWRKY84,OsWRKY43,OsWRKY115,OsWRKY9,OsWRKY75,OsWRKY3 ,OsWRKY102,OsWRKY11, Dlf1, OsWRKY11.1, OsWRKY11.2,OsWRKY42, WRKY-42
37632	24253678	Kobayashi T., Nagasaka S., Senoura T., Itai R.N., Nakanishi H., Nishizawa N.K.	Iron-binding haemerythrin RING ubiquitin ligases regulate plant iron responses and accumulation.	Nat Commun	4	2792	2013	_,HRZ1,HRZ2	OsHORZ1,OsHRZ1,  OsRING149, RING149,OsRFPH2-24, OsHRZ2, OsRING150, RING150, CLG1, OsCLG1
37633	24247850	Luo C., Guo C., Wang W., Wang L., Chen L.	Overexpression of a new stress-repressive gene OsDSR2 encoding a protein with a DUF966 domain increases salt and simulated drought stress sensitivities and reduces ABA sensitivity in rice.	Plant Cell Rep.	33(2)	323-36	2014	LEA3-1,_,_,_,_,_,_,DSR2,ONAC2,BZIP23,NCED3,P5CS,RAB16C	OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3, OsLEA3A, LEA3A,OsDSR1,OsDSR3,OsDSR4,OsDSR5,OsDSR6,OsDSR7,OsDSR2,SNAC1, snac1, OsNAC9, ONAC002, ONAC2, ONAC033, ONAC33, ONAC043, ONAC43, ONAC044, ONAC44, OsNAC19, NAC19, SNAC1/ONAC002, OsSNAC1, OsNAC9, OsNAC1,OsbZIP23, OsAREB1, OsABF2, Osbzip23, OsAREB2, OsZIP23, ZIP23,OSNCED3, OsNCED-3, OsNCED3, OsNCED3a, NCED3a, OsNCED4, NCED4, OsNECD2, OsNCED2b, NCED2b ,OsP5CS, P5CS1, OsP5CS1, OsALDH18B1, ALDH18B1, OsP5CS-1, P5CS-1,rab21, OsLEA27, rab16C, OsRAB16C, DHD
37634	24282069	Chen Y., Sun A., Wang M., Zhu Z., Ouwerkerk P.B.	Functions of the CCCH type zinc finger protein OsGZF1 in regulation of the seed storage protein GluB-1 from rice.	Plant Mol. Biol.	84(6)	621-34	2014	_,GLUB1,RISBZ1	OsGZF1,GluB1, GluB1-A, GluB-1a, GluB-1, OsGluB1, GluB-1b, OsGluB-1b, GLUB1B,OsbZIP58, bZIP58, OsEnS-92, OsSMF1, SMF1, OsRISBZ1, RISBZ1/bZIP58
37635	24251791	Nozoye T., Nagasaka S., Bashir K., Takahashi M., Kobayashi T., Nakanishi H., Nishizawa N.K.	Nicotianamine synthase 2 localizes to the vesicles of iron-deficient rice roots, and its mutation in the YXXphi or LL motif causes the disruption of vesicle formation or movement in rice.	Plant J.			2013	NAS2	OsNAS2, OsNAS1
37636	24258242	Ding C., You J., Chen L., Wang S., Ding Y.	Nitrogen fertilizer increases spikelet number per panicle by enhancing cytokinin synthesis in rice.	Plant Cell Rep.	33(2)	363-71	2014	IPT2,IPT5,IPT4,IPT7,IPT8,IPT3,IPT1	OsIPT2,OsIPT5,OsIPT4,OsIPT7,OsIPT8,OsIPT3,OsIPT1
37637	24279300	Zhou J., Liu Q., Zhang F., Wang Y., Zhang S., Cheng H., Yan L., Li L., Chen F., Xie X.	Overexpression of OsPIL15, a Phytochrome interacting factor-like protein gene, represses etiolated seedling growth in rice.	J Integr Plant Biol			2013	PIL15	OsPIL15, OsbHLH105, PIF3, OsPIF3
37638	24286292	Singh A., Kanwar P., Yadav A.K., Mishra M., Jha S.K., Baranwal V., Pandey A., Kapoor S., Tyagi A.K., Pandey G.K.	Genome-wide expressional and functional analysis of calcium transport elements during abiotic stress and development in rice.	FEBS J.	281(3)	894-915	2014	_,ANN1,ANN6,ANN7,ANN8,ANN9,ANN10,ANN2,ACA8,GLR4.7,GLR4.5,GLR4.1,ACA4,CNGC14,GLR4.3,GLR4.4,ANN3,CNGC10,CNGC4,CNGC9,GLR4.6,GLR4.8,CNGC3,GLR4.2,GLR3.7,ANN5,GLR3.8,ANN4,CNGC13,CNGC11,ECA1,ACA2,ACA11,ACA3,CAX7,ECA2,ACA1,ACA6,GLR3.5,GLR2.2,ACA9,TPC1,GLR3.4,CNGC2,CNGC1,GLR3.1,GLR4.9,GLR2.1,CNGC5,CNGC12,CNGC6,CNGC17,ACA7,ACA5,_,GLR3.3,GLR2.3,CNGC16,CNGC8,CDS1,GLR2.4,GLR1.3,GLR3.6,GLR1.1,GLR1.2,CCX1,CCX4,_,_,_,_,CCX3,CAX4,CAX2,CAX3,CAX1A,CDT1,CAX8,CAX1B,CAX1C,CNGC7	NCKX1,OsANN1,OsANN6,OsANN7,OsANN8,OsANN9,OsANN10,OsANN2, OsANN1, ANN1,osACA8, OsACA7, ACA13,OsGLR4.7,OsGLR6.8, GLR6.8,OsGLR4.5, OsGLR6.6, GLR6.6,OsGLR4.1, OsGLR6.2, GLR6.2,osACA4, OsACA8, ACA8, OsACA4,OsCNGC14, OsCNGC3, CNGC3,OsGLR4.3, OsGLR6.4, GLR6.4,OsGLR4.4, OsGLR6.5, GLR6.5,OsANN3, OsANN4, ANN4,OsCNGC10, OsCNGC11, CNGC11,OsCNGC4, OsCNGC12, CNGC12 ,OsCNGC9, OsCNGC16, CNGC16,OsGLR4.6, OsGLR6.7, GLR6.7,OsGLR4.8, OsGLR6.9, GLR6.9,OsCNGC3, OsCNGC7, CNGC7 ,OsGLR4.2, OsGLR6.3, GLR6.3 ,OsGLR3.7, OsGLR7.2, GLR7.2,OsANN5,OsGLR3.8, OsGLR9.9, GLR9.9,OsANN4, OsANN9, ANN9,OsCNGC13, OsCNGC1, OsCNGC3, CNGC3,OsCNGC11, OsCNGC13, CNGC13, SSS1-D ,osECA1, OsECA1,osACA2, OsACA10, OsPM12ATP,osACA11, OsACA6, OsACA5, OsPM4ATP8,osACA3, OsACA4, OsPM3ATPB,OsCAX7, OsNCX12, NCX12, OsNaCa11exA ,OsECA2, OsER3ATP3 ,osACA1, OsACA1, OsACA3, OsPM3ATP2,osACA6, OsACA1, OsACA6, OsPM1ATPaseII, ACA3,OsGLR3.5, OsGLR3.3, GLR3.3, OsGLR6.12, GLR6.12,OsGLR2.2, OsGLR2.1, GLR2.1, OsGLR9.4, GLR9.4,osACA9, OsACA2, ACA2, OsPM2ATP9,OsTPC1, Tpc1, OsCC1, OsCL1 pore,OsGLR3.4, OsGLR6.11, GLR6.11,OsCNGC2, OsCNGC1, CNGC1,OsCNGC1, OsCNGC15, CNGC15,OsGLR3.2, GLR3.2, OsGLR3.1, OsGLR4.1, GLR4.1,OsGLR4.9, OsGLR1.3, GLR1.3, OsGLR6.10, GLR6.10,OsGLR2.1, OsGLR2.2, GLR2.2, OsGLR9.3, GLR9.3,OsCNGC5, OsCNGC10, CNGC10  ,OsCNGC12, OsCNGC2, CNGC2 ,OsCNGC6, OsCNGC4, CNGC4, OsSTA107,OsCNGC17, OsCNGC5, CNGC5, OsSTA282,osACA7, OsACA6, ACA6, OsACA7, OsPM5ATP4, PM5ATP4 ,osACA5, OsACA9, ACA9, OsACA5, OsPM12ATP4, PM12ATP4,OsGLR3.1, GLR3.1, OsGLR3.2, GLR3.2, OsGLR2.1, GLR2.1,OsGLR3.3, OsGLR3.5, GLR3.5, OsGLR6.1, GLR6.1,OsGLR2.3, OsGLR9.5, GLR9.5,OsCNGC16, OsCNGC8, CNGC8, OsSTA273,OsCNGC8, OsCNGC6, CNGC6, OsCNGC9,OsCNGC15, CNGC15, OsCNGC9, CNGC9, OsCDS1,OsGLR2.4, OsGLR9.6, GLR9.6,OsGLR1.3, OsGLR1.1, GLR1.1, OsGLR9.7, GLR9.7,OsGLR3.6, OsGLR3.4, GLR3.4, OsGLR7.1, GLR7.1,OsGLR1.1, OsGLR1.2, GLR1.2, OsGLR9.8, GLR9.8,OsGLR1.2, OsGLR1.4, GLR1.4, OsGLR2.2, GLR2.2,OsCCX1, OsNCX6, NCX6,OsCCX4, OsNCX15, NCX15,OsMHX, OsMHX2, MHX2, OsNCX14, OsNCX14.1, OsNCX14.2, NCX14, OsMHX1, MHX1,OsMHX1, MHX1, OsMHX2, MHX2,OsEFCAX1, OsNCX1, OsNCX1.1, OsNCX1.2, NCX1, OsNCL1, NCL1,OsEFCAX2, OsNCX4, OsNCX4.1, OsNCX4.2, NCX4, OsNCL2, NCL2,OsCCX3, OsNCX11, NCX11,CAX2, OsCAX2, OsCAX4, OsSTA47, OsNCX3, NCX3,OsCAX2, CAX5, OsNCX7, OsNCX7.1, OsNCX7.2, NCX7, OsVCX2, OsOSCA1.2, OSCA1.2,OsCAX3, CAX6, OsNCX9, OsNCX9.1, OsNCX9.2, NCX9,OsCAX1a, CAX1a, CAX1, OsCAX1, OsNCX2, OsNCX2.1, OsNCX2.2, NCX2, OsVCAX1a,OsCDT1, OsCCX2, CCX2, OsNCX8, NCX8,OsCAX8, OsNCX13, NCX13, OsNaCa11exB, OsCCX5, CCX5, CCX5_Ath,OsCAX1b, CAX1b, CAX3, OsNCX10, NCX10,OsCAX1c, CAX1c, CAX4, OsNCX5, OsNCX5.1, OsNCX5.2, NCX5,OsCNGC7, OsCNGC14, CNGC14 
37639	24103067	Nath K., Poudyal R.S., Eom J.S., Park Y.S., Zulfugarov I.S., Mishra S.R., Tovuu A., Ryoo N., Yoon H.S., Nam H.G., An G., Jeon J.S., Lee C.H.	Loss-of-function of OsSTN8 suppresses the photosystem?II core protein phosphorylation and interferes with the photosystem?II repair mechanism in rice (Oryza sativa).	Plant J.	76(4)	675-86	2013	STN8,STN7	OsSTN8,OsSTN7
37640	24212861	De Kochko,A., Kiefer,M.C., Cordesse,F., Reddy,A.S. and Delseny,M.	Distribution and organization of a tandemly repeated 352-bp sequence in the oryzae family	Theor. Appl. Genet.	82(1)	57-64	1991		
37641	22730405	Hua,D., Wang,C., He,J., Liao,H., Duan,Y., Zhu,Z., Guo,Y., Chen,Z. and Gong,Z.	A plasma membrane receptor kinase, GHR1, mediates abscisic acid- and hydrogen peroxide-regulated stomatal movement in Arabidopsis	Plant Cell	24(6)	2546-2561	2012		
37642	24058148	Kamada-Nobusada,T., Makita,N., Kojima,M. and Sakakibara,H.	Nitrogen-dependent regulation of de novo cytokinin biosynthesis in rice: the role of glutamine metabolism as an additional signal	Plant Cell Physiol.	54(11)	1881-1893	2013	IPT3,IPT5,IPT2,IPT4,IPT7,IPT8,IPT1	OsIPT3,OsIPT5,OsIPT2,OsIPT4,OsIPT7,OsIPT8,OsIPT1
37643	24240868	Li,S., Li,W., Huang,B., Cao,X., Zhou,X., Ye,S., Li,C., Gao,F., Zou,T., Xie,K., Ren,Y., Ai,P., Tang,Y., Li,X., Deng,Q., Wang,S., Zheng,A., Zhu,J., Liu,H., Wang,L. and Li,P.	Natural variation in PTB1 regulates rice seed setting rate by controlling pollen tube growth	Nat Commun	4	2793	2013	PTB1	,  OsRING45, RING45
37644	24272791	Masumura,T., Shibata,D., Hibino,T., Kato,T., Kawabe,K., Takeba,G., Tanaka,K. and Fujii,S.	cDNA cloning of an mRNA encoding a sulfur-rich 10 kDa prolamin polypeptide in rice seeds	Plant Mol. Biol.	12(2)	123-130	1989	CYSR10	Prol-01, CysR10, OsCysR10, crP10, pro10.1, Ospro10.1
37645	24169660	Nakazono,N., Kanno,A., Tsutsumi,N. and Hirai,A.	Homologous recombination mediated by two palindromic repeated sequences in the mitochondrial genome of Oryza	Theor. Appl. Genet.	91(1)	1-8	1995		
37646	23852329	Okazaki,M., Kazama,T., Murata,H., Motomura,K. and Toriyama,K.	Whole Mitochondrial Genome Sequencing and Transcriptional Analysis to Uncover an RT102-Type Cytoplasmic Male Sterility-Associated Candidate Gene Derived from Oryza rufipogon	Plant Cell Physiol.	54(9)	1560-1568	2013		
37647	23944999	Orjuela,J., Thiemele,D.E., Kolade,O., Cheron,S., Ghesquiere,A. and Albar,L.	A recessive resistance to Rice yellow mottle virus is associated with a rice homolog of the CPR5 gene, a regulator of active defence mechanisms	Mol. Plant Microbe Interact.	26(12)	1455-63	2013	RYMV2	OsCPR5-1, CPR5-1, OsRYMV2, OsCPR5.1, CPR5.1
37649	23681551	Sarwat,M. and Naqvi,A.R.	Heterologous expression of rice calnexin (OsCNX) confers drought tolerance in Nicotiana tabacum	Mol. Biol. Rep.	40(9)	5451-5464	2013	CNX	OsCNX, OsCNX1, CNX1
37650	0	Subudhi,P.K., Magpantay,G.B. and Karan,R.	A retrotransposon-based probe for fingerprinting and evolutionary studies in rice (Oryza sativa)	Genet. Resour. Crop Evol.	60(4)	1263-1273	2013		
37651	23859433	Vigueira,C.C., Li,W. and Olsen,K.M.	The role of Bh4 in parallel evolution of hull colour in domesticated and weedy rice	J. Evol. Biol.	26(8)	1738-1749	2013	BH4	Bh4, OsBH4, OsATL14, ATL14
37652	24148990	Zhu,T., Xu,P.Z., Liu,J.P., Peng,S., Mo,X.C. and Gao,L.Z.	Phylogenetic relationships and genome divergence among the AA- genome species of the genus Oryza as revealed by 53 nuclear genes and 16 intergenic regions	Mol. Phylogenet. Evol.	70	348-361	2014	GW2,SPL7,DWARF4,MOC1,DCL1,_,GAMYB,TAB1,BWMK1,GLN1;1,PCNA,GR2,SAP1,ACS1,LOX-L2,CRL1,ONAC2,FON1,APX2,RAFTIN1,AOS1,_,PAIR1,CCR12,_,BP73,_,_,GSTF3,_,_,SERL5,_,_,RFL,NOP,_,RAG,_,TERT,EMF2A,RAC1,TUB3,_,SPK,RYMV1,BAD1,SLR1,_,SPL11,DL,NHX1,EF1,CK1	OsGW2, OsRING429, RING429, GNL44, OsGNL44,spl7, HSFA4D, HSF10, HSF15, OsHSF15, SP17, OsHsf-15, rHsf10, OsHsfA4d, HSfA4d, lrd13, HSF1,OsDWARF4, osdwarf4, OsDWF4, DWF4, CYP90B2, OsCYP90B2, D4, OsD4,moc1, OsMOC1, OsGRAS-33, OsGRAS33, GRAS-33, GRAS33, GNP6, OsGNP6,Dcl1, OsDCL1, osDCL1, Os-DCL1, OsDCL1a, DCL1a,RbH,OsGAMYB, GAM1, OsGAMyb, Os-MYBGA, Os GAMYB, OsMYBGA, MYBGA, Os2R_MYB15, 2R_MYB15 ,Os WUS, WUS, OsWOX1, WOX1, OsWUS, OsTAB, TAB1/WUS, MOC3, MOC3/OsWUS, SRT1, MOC3/TAB1/SRT1, DC1, OsDC1, DAP1, OsDAP1,OsBWMK1, MPK12, MAPK1, OsMAPK1, OsMPK12, OsMPK17-1, MPK17-1, OsBWMK1L, OsBWMK1M, OsBWMK1S, OsMAPK17-1, MAPK17-1, MAPK12, OsMAPK12,OsGLN1;1, GS1, RGS28, OsGS1;1, GS1;1, OsGS, GS1, OsGS1, GLN1-1, OsGS1-1, GS1-1, GS1.1, OsGS1.1,OsPCNA,OsGR2, RGRC2, OsGR, OsGR3, OsRGRC2,Osi-SAP1, ISAP1, OsiSAP1, OSISAP1, OsSAP1,ACC1*, OsACS1, Os-ACS1, ACC1, OsACC1,OsLOX-L2, LOX1.1, LOX L-2, LOX-2, OsLOX2, LOX2,crl1, crl1*, ARL1, ARL1/CRL1, OsLBD3-2, LBD3-2, OsCRL1,SNAC1, snac1, OsNAC9, ONAC002, ONAC2, ONAC033, ONAC33, ONAC043, ONAC43, ONAC044, ONAC44, OsNAC19, NAC19, SNAC1/ONAC002, OsSNAC1, OsNAC9, OsNAC1,OsFON1, fon1, OsRLCK219, RLCK219,OsAPX2, OsAPx02, APXb, OsAPx2, OSAPX2, APx2, cAPX, OsAPX1, APX1,OsRAFTIN1, BURP13, OsBURP13, Os RAFTIN1,OsAOS, OsAOS1, CYP74A1, OsAOS2, AOS2,ATL3I, OsHIGD1, HIGD1 ,Pair1, OsPAIR1,CCR1, OsCCR1, OsCCR12,Dad,BP-73, OsBP-73, Riaa1, Os-BP-73,Ord,AGM1,OsGSTF3, gstf3,OsHyPRP03, HyP/GRP03, OsHyPRP3, HyP/GRP3, LTP1,OsDREPP1, DREPP1, RS1,OsSERL5, OsBAK1-4, OsSERK1, BAK1-4, SERK1,OsGPCR, GPCR,OsWD40-32, OsFY, FY,  OsDWD32, DWD32,RFL, OSL, FL, APO2, APO2/RFL, SSC, SSC/RFL/APO2, OsRFL, OsFL, OsAPO2, OsSSC,OsNOP, OsC2DP53, C2DP53,OsMUS81, OsMUS81alpha, OsMUS81beta, ERCC4,MADS3, OsMADS3, OsMADS3(t), RMADS222, RAG1, rf3,Amt,OsTERT,OsEMF2a, OsEMF2, EMF2, ZOS4-02, OsZOS4-02,OsRAC1, OsRac1, Os Rac1, Rac1, Os-Rac1,OsTUB3, TUBB3, RTUB-2,Arf75,CDPK 1, CDPK1, CDPK23, OsCDPK23, OsCPK23, CPK23, OsSPK,Rymv1, eIF(iso)4G, OsRYMV1, OseIF(iso)4G, eIFiso4G,Badh1, badh1, BAD1, BADH1, OsBADH1, BADH, OsALDH10A5, ALDH10A5 ,slr1-1, slr1, slr, GAI, OsGAI, OsSLR1, Os SLR1, OsRGA1, OsGRAS-18, OsGRAS-18, GRAS-18, GRAS18, SLR-1,BEL1, OsBEL, BEL,spl11, spl11*, OsPUB11, PUB11,  OsPUB11/SPL11, PUB11/SPL11,OsDL, dl(lop), lop, dl, dl1, OsDRPq3, DRPq3,OsNHX1, OcNHX1, OgNHX1, OrNHX1, OpNHX1, ObNHX1,Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,OsCK1, CIPK31, OsCIPK31, Os-CIPK3, OsSnRK3.11, SnRK3.11
37653	14605232	Riemann M., Muller A., Korte A., Furuya M., Elmar W Weiler, Nick P.	Impaired induction of the jasmonate pathway in the rice mutant hebiba.	Plant Physiol.	133(4)	1820-30	2003	AOC,OPR1	OsAOC, AOC1, OsAOC1, HB, CPM2, OsAOC4, AOC4,OsOPR1, OsOPR2, OsOPR11, OsOPR06-6, OPDAR1, OsOPR, OPDAR
37654	12569412	Sobajima H., Takeda M., Sugimori M., Kobashi N., Kiribuchi K., Eun-Min Cho, Akimoto C., Yamaguchi T., Minami E., Shibuya N., Schaller F., Elmar W Weiler, Yoshihara T., Nishida H., Nojiri H., Omori T., Nishiyama M., Yamane H.	Cloning and characterization of a jasmonic acid-responsive gene encoding 12-oxophytodienoic acid reductase in suspension-cultured rice cells.	Planta	216(4)	692-8	2003	OPR1	OsOPR1, OsOPR2, OsOPR11, OsOPR06-6, OPDAR1, OsOPR, OPDAR
37655	12723614	Kaneko S., Kobayashi H.	Purification and characterization of extracellular beta-galactosidase secreted by supension cultured rice (Oryza sativa L.) cells.	Biosci. Biotechnol. Biochem.	67(3)	627-30	2003	BGAL8	OsBgal8, OsBGal8
37656	0	Yoon U.H., Lee J., Hahn J.H., Kim Y.K., Lee G.S., Ji H.S., Kim C.K., Mun J.H., Kim Y.M., Kim T.H.	Structural and expression analysis of prolamin genes in Oryza sativa L	Plant Biotechnol Rep	6	251-262	2012	_,CYSR10,PRO13A.3,PRO10.3,PRO13A.6,PRO13B.5,PRO13B.9,PRO13B.14,PRO13B.22,_,PRO13B.3,PRO16.1,PRO13B.8,PRO10.4,PRO13A.1,CYSP13,PRO13B.1,PRO13A.2,PRO13B.16,PRO13B.17,PRO13B.18,PRO13B.21,PRO13B.2,PRO13A.4,PRO16.2,PRO13B.6	Prol-13,Prol-01, CysR10, OsCysR10, crP10, pro10.1, Ospro10.1,Prol-24, pro13a.3, OsPRO13A.3,Prol-02, pro10.3, OsPRO10.3,Prol-26, pro13a.6, OsPRO13A.6,Prol-03, pro13b.5, OsPRO13B.5,Prol-05, pro13b.9, OsPRO13B.9,PG5b, Prol-08, pro13b.14, OsPRO13B.14,Prol-15, pro13b.22, OsPRO13B.22,Prol-09, Prol-27,Prol-22, pro13b.3, OsPRO13B.3, PROLM22,Prol-16, OsEnS-87, EnS-87, pro16.1, OsPRO16.1,Prol-04, pro13b.8, OsPRO13B.8, PROLM4,Prol-23, pro10.4, SSA5, OsPRO10.4,RP6, Prol-18, OsEnS-93, pro13a.1, OsPRO13A.1, PROLM25,CysP13, OsCYSP13, CpP13, PG5a, Prol-06, pro13b.11, OsPRO13B.11, PROLM9, OsPROLM9,Prol-20, pro13b.1, OsPRO13B.1, PROLM19 ,Prol-19, OsEnS-94, RM1, OsRM1, pro13a.2, OsPRO13A.2, PROLM26,Prol-10, pro13b.16, OsPRO13B.16, PROLM12,Prol-11, pro13b.17, OsPRO13B.17, PROLM13,Prol-12, pro13b.18, OsPRO13B.18,Prol-14, pro13b.21, OsPRO13B.21, PROLM17,Prol-21, pro13b.2, OsPRO13B.2, PROLM20,Prol-25, Prol-28, Prol-29, Prol-30, pro13a.4, OsPRO13A.4, PROLM28,Prol-17, OsEnS-88, pro16.2, OsPRO16.2, PROLM24,pro13b.6, OsPRO13B.6, Prol-07
37657	23797600	Mizobuchi R., Sato H., Fukuoka S., Tsushima S., Imbe T., Yano M.	Identification of qRBS1, a QTL involved in resistance to bacterial seedling rot in rice.	Theor. Appl. Genet.	126(9)	2417-25	2013		
37658	23803744	Wakasa Y., Hayashi S., Takaiwa F.	Effect of overexpression of kinase-or RNase-deficient OsIRE1 on the endoplasmic reticulum stress response in transgenic rice plants.	Plant Signal Behav	8(9)	 e25343	2013		
37659	23831949	Ueda Y., Uehara N., Sasaki H., Kobayashi K., Yamakawa T.	Impacts of acute ozone stress on superoxide dismutase (SOD) expression and reactive oxygen species (ROS) formation in rice leaves.	Plant Physiol. Biochem.	70	396-402	2013		
37660	23763241	Kurokawa S., Nakamura R., Mejima M., Kozuka-Hata H., Kuroda M., Takeyama N., Oyama M., Satoh S., Kiyono H., Masumura T., Teshima R., Yuki Y.	MucoRice-cholera toxin B-subunit, a rice-based oral cholera vaccine, down-regulates the expression of alpha-amylase/trypsin inhibitor-like protein family as major rice allergens.	J. Proteome Res.	12(7)	3372-82	2013		
37661	23790109	Takagi H., Uemura A., Yaegashi H., Tamiru M., Abe A., Mitsuoka C., Utsushi H., Natsume S., Kanzaki H., Matsumura H., Saitoh H., Yoshida K., Cano L.M., Kamoun S., Terauchi R.	MutMap-Gap: whole-genome resequencing of mutant F2 progeny bulk combined with de novo assembly of gap regions identifies the rice blast resistance gene Pii.	New Phytol.	200(1)	276-83	2013	_,PI3,PI5-2	Pii,Pi3, Pi5, Pi-3(t), Pi-3, Pi3(t), Pi5(t), Pi5-1, Pii,  RMg22, RMg21,Pi3, Pi5, Pi-3(t), Pi-3, Pi3(t), Pi5(t), Pi5-2, Pii,  RMg22, RMg21
37662	23789941	Hori K., Ogiso-Tanaka E., Matsubara K., Yamanouchi U., Ebana K., Yano M.	Hd16, a gene for casein kinase I, is involved in the control of rice flowering time by modulating the day-length response.	Plant J.	76(1)	36-46	2013	HD5,HD2,HD16,GHD7	Hd5(t)*, Hd5, qHD5, HAP3H, OsHAP3H, NF-YB, CBF-A, DTH8 , qHD5(t)*, Ghd8, Ghd8/DTH8, Lhd1, NF-YB11, OsNF-YB11, NFYB11, LH8, DTH8/Ghd8, RH8, DTH8/Ghd8/LHD1, CAR8, DTH8/Ghd8/ OsHAP3H, EF8, OsEF8,Hd2(t), Hd2, qHD2(t), OsPRR37, Os-PRR37, PRR37, Prr4, OsPRR4, DTH7, Os DTH7, OsCCT28, CCT28, Ghd7.1, PRR37/Hd2, EH7-2, EH7-2/Hd2, Hd2/PRR37, PRR37-1a, PRR37-1b, PRR37-1c, PRR37-2a, PRR37- 2, HD7.2,Hd16, EL1, CK1, Hd16/CKI, Hd16/EL1,Ghd2, Ghd7, OsGhd7, OsCCT26, OsCMF8, OsI, Ghd7/Hd4, Hd4, EH7-1/Hd4, Ghd7-0a, EH7-1, EH7/Ghd7, EH7, OsEH7, GLW7.1, OsGLW7.1
37663	23832214	Momma M., Fujimoto Z.	Expression, crystallization and preliminary X-ray analysis of rice L-galactose dehydrogenase.	Acta Crystallogr. Sect. F Struct. Biol. Cryst. Commun.	69(Pt 7)	809-11	2013		
37664	23889289	Taniguchi S., Hosokawa-Shinonaga Y., Tamaoki D., Yamada S., Akimitsu K., Gomi K.	Jasmonate induction of the monoterpene linalool confers resistance to rice bacterial blight and its biosynthesis is regulated by JAZ protein in rice.	Plant Cell Environ.	37(2)	451-61	2013	TIFY10C	OsJAZ7, JAZ7, OsJAZ 8, OsJAZ8, Os-JAZ8, JAZ8, OsTIFY10c, OsTIFY10c/OsJAZ8
37665	23874658	Fekih R., Takagi H., Tamiru M., Abe A., Natsume S., Yaegashi H., Sharma S., Sharma S., Kanzaki H., Matsumura H., Saitoh H., Mitsuoka C., Utsushi H., Uemura A., Kanzaki E., Kosugi S., Yoshida K., Cano L., Kamoun S., Terauchi R.	MutMap+: Genetic Mapping and Mutant Identification without Crossing in Rice.	PLoS ONE	8(7)	e68529	2013		
37666	23673217	Muto T., Todoroki Y.	Brassinolide-2,3-acetonide: a brassinolide-induced rice lamina joint inclination antagonist.	Bioorg. Med. Chem.	21(14)	4413-9	2013		
37667	23987813	Funabiki A., Takano S., Matsuda S., Tokuji Y., Takamure I., Kato K.	The rice reduced culm number11 gene controls vegetative growth under low-temperature conditions in paddy fields independent of RCN1/OsABCG5.	Plant Sci.	211	70-6	2013		
37668	23212304	Kajiura H., Wasai M., Kasahara S., Takaiwa F., Fujiyama K.	N-glycosylation and N-glycan moieties of CTB expressed in rice seeds.	Mol. Biotechnol.	54(3)	784-94	2013		
37669	23989667	Toda Y., Yoshida M., Hattori T., Takeda S.	RICE SALT SENSITIVE3 binding to bHLH and JAZ factors mediates control of cell wall plasticity in the root apex.	Plant Signal Behav	8(11)	e26256	2013		
37670	23910376	Miyazaki M., Araki M., Okamura K., Ishibashi Y., Yuasa T., Iwaya-Inoue M.	Assimilate translocation and expression of sucrose transporter, OsSUT1, contribute to high-performance ripening under heat stress in the heat-tolerant rice cultivar Genkitsukushi.	J. Plant Physiol.	170(18)	1579-84	2013		
37674	21635897	Wei T., Miyazaki N., Uehara-Ichiki T., Hibino H., Shimizu T., Netsu O., Kikuchi A., Sasaya T., Iwasaki K., Omura T.	Three-dimensional analysis of the association of viral particles with mitochondria during the replication of rice gall dwarf virus	J. Mol. Biol.	410	436-446	2011		
37675	0	Taguchi-Shiobara F., Kawagoe Y., Kato H., Onodera H., Tagiri A., Hara N., Miyao A., Hirochika H., Kitano H., Yano M., Toki S.	A loss-of-function mutation of rice DENSE PANICLE 1 causes semi-dwarfness and slightly increased number of spikelets	Breed. Sci.	61	17-25	2011	DEP1	OsDEP1, EP, qPE9-1, DN1, DEP1/DN1/qPE9-1, qNGR9, qDEP1, RGG4/DEP1/DN1/qPE9-1/OsGGC3, RGG4, OsDN1, OsGGC3, GGC3
37677	21171893	Ando S., Sato Y., Shigemori H., Shimizu T., Okada K., Yamane H., Jikumaru Y., Kamiya Y., Yamada K., Akimoto-Tomiyama C., Tanabe S., Nishizawa Y., Minami E.	Identification and characterization of 2'-deoxyuridine from the supernatant of conidial suspensions of rice blast fungus as an infection-promoting factor in rice plants	Molecular Plant-Microbe Interactions	24	519-532	2011		
37680	21248479	Xia J., Yamaji N., Ma J.F.	Further characterization of an aluminum influx transporter in rice	Plant Signaling and Behavior	6	-	2011		
37682	0	Suzuki Y.	Isolation and characterization of a rice (Oryza sativa L.) mutant deficient in seed phospholipase D, an enzyme involved in the degradation of oil-body membranes	Crop Sci.	51	567-573	2011		
37683	0	Mochizuki S., Saitoh K., Minami E., Nishizawa Y.	Localization of probe-accessible chitin and characterization of genes encoding chitin-binding domains during rice-Magnaporthe oryzae interactions	Journal of General Plant Pathology	77	163-173	2011		
37684	21255809	Shinano T., Komatsu S., Yoshimura T., Tokutake S., Kong F.J., Watanabe T., Wasaki J., Osaki M.	Proteomic analysis of secreted proteins from aseptically grown rice.	Phytochemistry	72(4-5)	312-20	2011		
37690	21392842	Kato-Noguchi H.	Barnyard grass-induced rice allelopathy and momilactone B	J. Plant Physiol.	168	1016-1020	2011		
37696	23466256	Ikeda M., Miura K., Aya K., Kitano H., Matsuoka M.	Genes offering the potential for designing yield-related traits in rice.	Curr. Opin. Plant Biol.	16(2)	213-20	2013	D14,D10,EF1,APO1,NGLF,HD5,MOC1,FC1,FZP,RFL,EP2,D3,LAX2,LK3,EP3,TLD1,TAD1,FLO2,SG1,SRS3,SP1,HGW,ASP1,GIF1,GW8,GW2,LRA1,ILI6,GS5,GHD7,DEP3,DLT,TID1,GN1A,GW5,PAP2,D17,LAX1,WFP,DEP1,D27	d14(d10), dwf13, d10, d14, D88, HTD2, OsHTD2, OsD14, qPPB3, D88/D14, HTD4,d10(d15,d16), d16, d15, dwf9, d10, OsCCD8b, OsCCD8, CCD8, OsD10,Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,apo1(t), apo1, SCM2, SCM2/APO1, OsFbox321, Os_F0393, Pbl6/APO1, Pbl6, OsPbl6,  OsFBX202, FBX202,OsARG, ARG, Nglf, Nglf-1, OsAGM, AGM,Hd5(t)*, Hd5, qHD5, HAP3H, OsHAP3H, NF-YB, CBF-A, DTH8 , qHD5(t)*, Ghd8, Ghd8/DTH8, Lhd1, NF-YB11, OsNF-YB11, NFYB11, LH8, DTH8/Ghd8, RH8, DTH8/Ghd8/LHD1, CAR8, DTH8/Ghd8/ OsHAP3H, EF8, OsEF8,moc1, OsMOC1, OsGRAS-33, OsGRAS33, GRAS-33, GRAS33, GNP6, OsGNP6,fc1, OsTB1, tb1, OsTB1/FC1, Os TB1, TB1, OsFC1, MP3, OsMP3,fzp*, fzp, OsBD1, BD1, OsERF#078, OsERF078, OsERF78, ERF78, AP2/EREBP#133, AP2/EREBP133, BFL1, SGDP7, OsSGDP7,RFL, OSL, FL, APO2, APO2/RFL, SSC, SSC/RFL/APO2, OsRFL, OsFL, OsAPO2, OsSSC,ep2, EP2/DEP2/SRS1, SRS1/DEP2, DEP2, SRS1, OsSRS1, CL7(t), OsRELA, RELA,d3, dwf3, D3/OsMAX2, Os_F0760, SOL1, OsORE9, ORE9, MAX2, OsRFPH2-10, RFPH2-10, OsD3,  OsFBL27, FBL27,OsLAX2, Gnp4/LAX2, Gnp4,lk3(t), lk3(t)*, SG3, GS3, SG3-GS3, OsGW3, OsGS3, RGG3/GS3/Mi/OsGGC1, RGG3, Mi, OsGGC1, GGC1, OsSYL3, SYL3, TT2, OsTT2,EP3/LP, LP, OsLP, OsFbox076, OsFbox76, Os_F0106, OsEP3,  OsFBK5, FBK5,OsGH3-13, GH3-13, TLD1/OsGH3.13, TLD1, OsGH3.13, TLD2,TAD1, OsCCS52A, TE, OsWD40-61, TAD1/TE, CCS52A1 ,  OsCCS52A1/TE/TAD1, CCS52A1/TE/TAD1, OsCDH1A, CDH1A,flo2, flo3(t), Osflo2, Osflo3(t), Osflo-2, flo-2, FLO2-1, FLO2-2,OsSG1, Sg1,OsSRS3, SAR1, OsSAR1, KIN13A, OsKIN13A,sp, SP, OsNPF4.1, NPF4.1, OsSP1,OsHGW,OsLIS-L1, OsWD40-155, ASP1, TPR2, OsTPR2, OsREL2, REL2, OsTPL3, TPL3, OsTPL2, TPL2, ASP-LSL,gif1, CIN2, OsCIN2, OsGIF1, WB1, OsWB1, GIF1/OsCIN2,SPL16, OsSPL16, SLP1, OsSLP1, qGW8, OsGW8,OsGW2, OsRING429, RING429, GNL44, OsGNL44,OsPIN2, PIN2, OsLRA1, WAR1, OsWAR1,ILI6, OsILI6, PGL1, OsPGL1,OsSCP26, SCP26, OsGS5,Ghd2, Ghd7, OsGhd7, OsCCT26, OsCMF8, OsI, Ghd7/Hd4, Hd4, EH7-1/Hd4, Ghd7-0a, EH7-1, EH7/Ghd7, EH7, OsEH7, GLW7.1, OsGLW7.1,dep3, OspPLAIIIdelta, pPLAIIIdelta,dlt, OsGRAS32, OsDLT, OsDLT1, DTL1, OsGRAS-32, OsGRAS32, GRAS-32, GRAS32, SMOS2/DLT, SMOS2, OsSMOS2, OsGS6, GS6,OsTID1, TubA2, SRS5, OS-TubA2, OsTubA2, OsSRS5, ,Gn1a, OsCKX2, CKX2, ckx2, Gn1a/OsCKX2, Os CKX2, CKX2/Gn1a,qSW5/GW5, GSE5, OsGSE5, OsGW5, qSW5,MADS34, OsMADS34, RMADS212/RMADS217/RMADS221, OsPAP2/MADS34, MADS34/PAP2, PAP2/OsMADS34, OsMADS34/PAP2, OsMADS19,d17(t), dwf14, d17, htd1, OsCCD7, CCD7, D17/HTD1, HTD1, OsHTD1, OsD17,lax, lax(lx), lx, OsbHLH123, bHLH123, OsLAX1, BOS1, OsBOS1,OsSPL14, SPL14, IPA1, WFP/IPA1, OsSPL14/WFP/IPA1, OsIPA1,  IPA1/OsSPL14,OsDEP1, EP, qPE9-1, DN1, DEP1/DN1/qPE9-1, qNGR9, qDEP1, RGG4/DEP1/DN1/qPE9-1/OsGGC3, RGG4, OsDN1, OsGGC3, GGC3,d27(d t), dt, dwf23, d27, OsD27
37697	24345551	Liang W., Shang F., Lin Q., Lou C., Zhang J.	Tillering and panicle branching genes in rice.	Gene	537(1)	1-5	2014	RFL,D14,FC1,DEP2,LAX2,D27,MOC1,TAD1,SP1,MADS57,DEP3,D17,DEP1,D3,D10,APO1,DLT,WFP,GN1A,LAX1	RFL, OSL, FL, APO2, APO2/RFL, SSC, SSC/RFL/APO2, OsRFL, OsFL, OsAPO2, OsSSC,d14(d10), dwf13, d10, d14, D88, HTD2, OsHTD2, OsD14, qPPB3, D88/D14, HTD4,fc1, OsTB1, tb1, OsTB1/FC1, Os TB1, TB1, OsFC1, MP3, OsMP3,,OsLAX2, Gnp4/LAX2, Gnp4,d27(d t), dt, dwf23, d27, OsD27,moc1, OsMOC1, OsGRAS-33, OsGRAS33, GRAS-33, GRAS33, GNP6, OsGNP6,TAD1, OsCCS52A, TE, OsWD40-61, TAD1/TE, CCS52A1 ,  OsCCS52A1/TE/TAD1, CCS52A1/TE/TAD1, OsCDH1A, CDH1A,sp, SP, OsNPF4.1, NPF4.1, OsSP1,OsMADS57, MADS-57,dep3, OspPLAIIIdelta, pPLAIIIdelta,d17(t), dwf14, d17, htd1, OsCCD7, CCD7, D17/HTD1, HTD1, OsHTD1, OsD17,OsDEP1, EP, qPE9-1, DN1, DEP1/DN1/qPE9-1, qNGR9, qDEP1, RGG4/DEP1/DN1/qPE9-1/OsGGC3, RGG4, OsDN1, OsGGC3, GGC3,d3, dwf3, D3/OsMAX2, Os_F0760, SOL1, OsORE9, ORE9, MAX2, OsRFPH2-10, RFPH2-10, OsD3,  OsFBL27, FBL27,d10(d15,d16), d16, d15, dwf9, d10, OsCCD8b, OsCCD8, CCD8, OsD10,apo1(t), apo1, SCM2, SCM2/APO1, OsFbox321, Os_F0393, Pbl6/APO1, Pbl6, OsPbl6,  OsFBX202, FBX202,dlt, OsGRAS32, OsDLT, OsDLT1, DTL1, OsGRAS-32, OsGRAS32, GRAS-32, GRAS32, SMOS2/DLT, SMOS2, OsSMOS2, OsGS6, GS6,OsSPL14, SPL14, IPA1, WFP/IPA1, OsSPL14/WFP/IPA1, OsIPA1,  IPA1/OsSPL14,Gn1a, OsCKX2, CKX2, ckx2, Gn1a/OsCKX2, Os CKX2, CKX2/Gn1a,lax, lax(lx), lx, OsbHLH123, bHLH123, OsLAX1, BOS1, OsBOS1
37698	21317545	Abe Y., Mieda K., Ando T., Kono I., Yano M., Kitano H., Iwasaki Y.	The SMALL AND ROUND SEED1 (SRS1/DEP2) gene is involved in the regulation of seed size in rice.	Genes Genet. Syst.	85(5)	327-39	2010	EP2	ep2, EP2/DEP2/SRS1, SRS1/DEP2, DEP2, SRS1, OsSRS1, CL7(t), OsRELA, RELA
37699	20502443	Li F., Liu W., Tang J., CHEN J., Tong H., Hu B., Li C., Fang J., Chen M., Chu C	Rice DENSE AND ERECT PANICLE 2 is essential for determining panicle outgrowth and elongation.	Cell Res.	20	839-849	2010	EP2	ep2, EP2/DEP2/SRS1, SRS1/DEP2, DEP2, SRS1, OsSRS1, CL7(t), OsRELA, RELA
37700	20547591	Minakuchi K., Kameoka H., Yasuno N., Umehara M., Luo L., Kobayashi K., Hanada A., Ueno K., Asami T., Yamaguchi S., KYOZUKA J.	FINE culm1 (FC1) works downstream of strigolactones to inhibit the outgrowth of axillary buds in rice.	Plant Cell Physiol.	51(7)	1127-35	2010	FC1,D17,D10	fc1, OsTB1, tb1, OsTB1/FC1, Os TB1, TB1, OsFC1, MP3, OsMP3,d17(t), dwf14, d17, htd1, OsCCD7, CCD7, D17/HTD1, HTD1, OsHTD1, OsD17,d10(d15,d16), d16, d15, dwf9, d10, OsCCD8b, OsCCD8, CCD8, OsD10
37701	18690207	Umehara M., Hanada A., Yoshida S., Akiyama K., Arite T., Noriko Takeda-Kamiya, Magome H., Kamiya Y., Shirasu K., Yoneyama K., KYOZUKA J., Yamaguchi S.	Inhibition of shoot branching by new terpenoid plant hormones.	Nature	455(7210)	195-200	2008	D3,D10,D17	d3, dwf3, D3/OsMAX2, Os_F0760, SOL1, OsORE9, ORE9, MAX2, OsRFPH2-10, RFPH2-10, OsD3,  OsFBL27, FBL27,d10(d15,d16), d16, d15, dwf9, d10, OsCCD8b, OsCCD8, CCD8, OsD10,d17(t), dwf14, d17, htd1, OsCCD7, CCD7, D17/HTD1, HTD1, OsHTD1, OsD17
37702	20587735	Kitagawa K., Kurinami S., Oki K., Abe Y., Ando T., Kono I., Yano M., Kitano H., Iwasaki Y.	A novel kinesin 13 protein regulating rice seed length.	Plant Cell Physiol.	51(8)	1315-29	2010	SRS3	OsSRS3, SAR1, OsSAR1, KIN13A, OsKIN13A
37703	24764504	Segami S., Kono I., Ando T., Yano M., Kitano H., Miura K., Iwasaki Y.	Small and round seed 5 gene encodes alphatubulin regulating seed cell elongation in rice	Rice (N Y)	5	4	2012	TID1	OsTID1, TubA2, SRS5, OS-TubA2, OsTubA2, OsSRS5, 
37763	24097262	Liang M., Yin X., Lin Z., Zheng Q., Liu G., Zhao G.	Identification and characterization of NF-Y transcription factor families in Canola (Brassica napus L.).	Planta	239(1)	107-26	2014	HAP5G,HAP5B,HAP5D,HAP5F,HAP5C,HAP5A,HAP5E	OsHAP5G, NF-YC, CBF-C, OsNF-YC3, Os-NF-YC3, NF-YC3, NFYC3,OsHAP5B, NF-YC, CBF-C, OsNF-YC4, Os-NF-YC4, NF-YC4, NFYC4, OsNF-YC4-3, NF-YC4-3,OsHAP5D, NF-YC, CBF-C, OsNF-YC6, Os-NF-YC6, NF-YC6, NFYC6,OsHAP5F, NF-YC, CBF-C, OsNF-YC5, Os-NF-YC5, NF-YC5, NFYC5,OsHAP5C, NF-YC, CBF-C, OsNF-YC2, Os-NF-YC2, NF-YC2, NFYC2, OsNF-YC4-1, NF-YC4-1,OsHAP5A, NF-YC, CBF-C, OsNF-YC1, Os-NF-YC1, NF-YC1, NFYC1 , OsNF-YC4-2, NF-YC4-2,OsHAP5E, NF-YC, CBF-C, OsNF-YC7, Os-NF-YC7, NF-YC7, NFYC7
37764	0	Wang A.a b, Zhang X.a, Yang C.c, Song Z.a, Du C.d, Chen D.a, He Y.a, Cai D.a	Development and characterization of synthetic amphiploid (AABB) between Oryza sativa and Oryza punctata	Euphytica	189	1-8	2013		
37765	0	Yasuda K.a, Tsukiyama T.a, Karki S.b, Okumoto Y.a, Teraishi M.a, Saito H.a, Tanisaka T.a	Mobilization of the active transposon mPing in interspecific hybrid rice between Oryza sativa and O. glaberrima	Euphytica	192	17-24	2013	MPING	mPing
37766	23832302	Nosaka M., Ono A., Ishiwata A., Shimizu-Sato S., Ishimoto K., Noda Y., Sato Y.	Expression of the rice microRNA miR820 is associated with epigenetic modifications at its own locus	Genes and Genetic Systems	88	105-112	2013	MIR820D,MIR820E,MIR820A,MIR820B,MIR820C	miR820d, osa-miR820d, osa-MIR820d,miR820e, osa-miR820e, osa-MIR820e,miR820a, osa-miR820a, osa-MIR820a, OsmiR820a,miR820b, osa-miR820b, osa-MIR820b, OsmiR820b,miR820c, osa-miR820c, osa-MIR820c, OsmiR820c
37767	0	Manangkil O.E.a, Vu H.T.T.b, Mori N.c, Yoshida S.d, Nakamura C.c	Mapping of quantitative trait loci controlling seedling vigor in rice (Oryza sativa L.) under submergence	Euphytica	192	63-75	2013		
37768	0	Koide Y.a b, Fujita D.b c, Tagle A.G.b, Sasaki K.a b, Ishimaru T.a b, Fukuta Y.a, Kobayashi N.a b c	QTL for spikelet number from a high-yielding rice variety, Hoshiaoba, detected in an introgression line with the genetic background of an indica rice variety, IR64	Euphytica	192	97-106	2013		
37769	24336215	Zhou F.a b, Lin Q.b, Zhu L.a, Ren Y.b, Zhou K.a, Shabek N.c d, Wu F.b, Mao H.c d, Dong W.b, Gan L.b, Ma W.b, Gao H.a, Chen J.b, Yang C.a, Wang D.b, Tan J.b, Zhang X.b, Guo X.b, Wang J.b, Jiang L.a, Liu X.a, Chen W.e, Chu J.e, Yan C.f, Ueno K.f, Ito S.f, Asami T.b, Cheng Z.b, Wang J.b, Lei C.b, Zhai H.b, Wu C.b, Wang H.b, Zheng N.c d, Wan J.a b	D14-SCF D3 -dependent degradation of D53 regulates strigolactone signalling	Nature	504	406-410	2013	D3,D53,D53L,D14	d3, dwf3, D3/OsMAX2, Os_F0760, SOL1, OsORE9, ORE9, MAX2, OsRFPH2-10, RFPH2-10, OsD3,  OsFBL27, FBL27,D53(D K3), DK3, Dwf34, SMXL6/7/8, OsD53,OsD53L,d14(d10), dwf13, d10, d14, D88, HTD2, OsHTD2, OsD14, qPPB3, D88/D14, HTD4
37770	0	Liu T.a b, Yu T.a, Xing Y.a	Identification and validation of a yield-enhancing QTL cluster in rice (Oryza sativa L.)	Euphytica	192	145-153	2013		
37772	0	Zhao W.G.a b, Chung J.W.c, Kwon S.W.a d, Lee J.H.e, Ma K.H.c, Park Y.J.a d	Association analysis of physicochemical traits on eating quality in rice (Oryza sativa L.)	Euphytica	191	9-21	2013		
37774	0	Sun P.a b d, Liu J.a, Wang Y.a, Jiang N.a, Wang S.a, Dai Y.a, Gao J.a, Li Z.a, Pan S.a, Wang D.a, Li W.a, Liu X.a, Xiao Y.a, Liu E.a, Wang G.L.a c, Dai L.a b	Molecular mapping of the blast resistance gene Pi49 in the durably resistant rice cultivar Mowanggu	Euphytica	192	45-54	2013	PI49	Pi49, Pi49(t)
37775	0	Yu J.a b, Zhao H.a, Zhu T.c, Chen L.a, Peng J.a d	Transferability of rice SSR markers to Miscanthus sinensis, a potential biofuel crop	Euphytica	191	455-468	2013		
37776	23706075	Yan Y.F.a b, Lestari P.a c, Lee K.J.a, Kim M.Y.a, Lee S.H.a, Lee B.W.a	Identification of quantitative trait loci for cadmium accumulation and distribution in rice (Oryza sativa)	Genome	56	227-232	2013		
37777	0	Cui D.a, Xu C.Y.b, Tang C.F.c, Yang C.G.d, Yu T.Q.c, A X.X.c, Cao G.L.a, Xu F.R.c, Zhang J.G.d, Han L.Z.a	Genetic structure and association mapping of cold tolerance in improved japonica rice germplasm at the booting stage	Euphytica	193	369-382	2013		
37778	0	Shanmugavadivel P.S.a, Mithra S.V.A.a, Dokku P.a, Kumar K.A.R.a, Rao G.J.N.c, Singh V.P.b, Singh A.K.b, Singh N.K.a, Mohapatra T.a c	Mapping quantitative trait loci (QTL) for grain size in rice using a RIL population from Basmati ~ indica cross showing high segregation distortion	Euphytica	194	401-416	2013		
37779	0	Colombari Filho J.M.a, de Resende M.D.V.b, de Morais O.P.a, de Castro A.P.a, Guimar?es ?.P.a, Pereira J.A.c, Utumi M.M.d, Breseghello F.a	Upland rice breeding in Brazil: A simultaneous genotypic evaluation of stability, adaptability and grain yield	Euphytica	192	117-129	2013		
37780	0	Wu D.H.a, Wu H.P.b, Wang C.S.b, Tseng H.Y.b, Hwu K.K.b	Genome-wide InDel marker system for application in rice breeding and mapping studies	Euphytica	192	131-143	2013		
37781	0	Kim S.I., Tai T.H.	High resolution genotyping by restriction enzyme-phased sequencing of advanced backcross lines of rice exhibiting differential cold stress recovery	Euphytica	192	107-115	2013		
37782	0	Kamiya T.a, Islam M.R.a c, Duan G.a d, Uraguchi S.a e, Fujiwara T.a b	Phosphate deficiency signaling pathway is a target of arsenate and phosphate transporter OsPT1 is involved in As accumulation in shoots of rice	Soil Sci. Plant Nutr.	59	580-590	2013	PT2,PT4,PT1,PT8	OsPT2, PTH1-2, OsPht1;2, PHT1;2, OsPHT1;2,OsPT4, PHT1-4, OsPht1;4, PHT1-2, PHT1;4, OsPHT1;4,OsPT1, PHT1-1, OsPht1;1, Pht1;1, OsPHT1;1, PHT1;1,OsPT8, PHT1-8, OsPht1;8, Pht1;8, PHT1;8, OsPHT1;8
37783	0	Miyazaki N.a, Ueno O.b, Saitou K.b	Effects of nitrogen on the expression of ribulose-1,5- bisphosphate carboxylase/oxygenase small subunit multigene family members in Rice (Oryza sativa L.)	Plant Prod. Sci.	16	37-40	2013	RBCS4,RBCS1,RBCS3,RBCS5,RBCS	RbcS, RbcS4, OsRBCS4, OsRbcS4,RbcS1, OsRBCS1, OsRbcS1,RbcS3, OsRBCS3, OsRbcS3, rbcS ,RbcS5, OsRBCS5, OsRbcS5, RbcS3, OsRbcS3,rbcS, OsRbcS, RBCS-C, RbcS2, OsRBCS2, RbcS1, OsRbcS2, OsrbcS1
37784	0	Sripinyowanich S.a e, Klomsakul P.a, Boonburapong B.b, Bangyeekhun T.a, Asami T.c, Gu H.d, Buaboocha T.a b, Chadchawan S.a	Exogenous ABA induces salt tolerance in indica rice (Oryza sativa L.): The role of OsP5CS1 and OsP5CR gene expression during salt stress	Environ. Exp. Bot.	86	94-105	2013		
37785	0	Lv B.S.a b, Li X.W.a c, Ma H.Y.c, Sun Y.d, Wei L.X.c, Jiang C.J.e, Liang Z.W.c	Differences in growth and physiology of rice in response to different saline-alkaline stress factors	Agron J	105	1119-1128	2013	NAC4,M6PR,P5CS,ALDH18B2	OsNAC4, NAC68, ONAC068, OnNAC4*, OnNAC4, OsNAC4/ONAC068,OsM6PR1, M6PR1, OsM6PR2, M6PR2, OsM6PR, OsS6PDH, S6PDH, OsAKR4-4, AKR4-4,OsP5CS, P5CS1, OsP5CS1, OsALDH18B1, ALDH18B1, OsP5CS-1, P5CS-1,P5CS2, OsP5CS2, OsALDH18B2 
37786	0	Shirasawa S.a, Kifuji Y.a c, Komiya R.a d, Kitashiba H.a, Nishimura M.b, Nishio T.a	Identification of a single nucleotide deletion causing frameshift mutation in OsDFR2A in a genic male sterile mutant of rice and its possible application to F1 hybrid breeding	Molecular Breeding	31	805-814	2013	DFR2 	OsTKPR1, TKPR1, OsDFR2, OS-DFR2, OsDFR2A, DFR2A, OsCCRL1, CCRL1
37787	0	Koshiba T.a, Hirose N.a, Mukai M.a, Yamamura M.a, Hattori T.a d, Suzuki S.a, Sakamoto M.b, Umezawa T.a c	Characterization of 5-hydroxyconiferaldehyde O-methyltransferase in Oryza sativa	Plant Biotechnology	30	157-167	2013	_,HCT1,_,CAD8C,HCT2,_,CCR20,CCR19,COMTL4,_,F5HL2,_,C3H1,C4H1,_,4CL5,C4H2,ACS9,4CL3,CCR21,ROMT9,GH2,PAL1,PAL	CADL,OsHCT1,HCT3,OsCAD8C, CAD8c,OsHCT2, HCT,ROMT-16, ROMT16, COA1, CCoAOMT-1, OsROMT-16, OsROMT16, OsCOA1, OsCCoAOMT-1,OS-CCR, OsCCR, CCR, OsCCR20, OsCCR14, CCR14 ,OsCCR19 ,OsCOMTL4, COMT2, OsCOMT2,OsOMT26, ROMT-15, ROMT15, COA20, OsCCoAOMT, CCoAOMT,OsF5HL2, CYP84A6, OsCYP84A6, OsF5H1, F5H1, OsCYP71AB10, CYP71AB10,OsF5H1, F5H1, OsCAld5H1, CAld5H1, CYP84A5, OsCYP84A5,OsC3H1, OsC3'H, C3'H, OsCYP71P5, CYP71P5,OsC4H1, OsC4H, C4H,ROMT-17, ROMT17, CCoAOMT1,Os4CL5, 4CL3, Os4CL3,OsC4H, OsC4HL, C4H, OsC4H2,OsACS9, 4CL4, OsACOS12, ACOS12 ,Os4CL3, Os4CL2, Os4CL, 4CL2, 4CL,OsCCR21 ,COMT, OsCOMT, ROMT-9, OsCOMT1, OsCAldOMT1, CAldOMT1, OsOMT, OsCOMT15, COMT15,gh2, CAD2, CAD, OsCAD2, OsGH2 ,OsPAL, Pal1*, Pal1, PAL, Pal_1, PalI, PAL2, OsPAL01, PAL01, OSPAL, CP-1, GP-1, OsPAL1, PAL3, OsPAL3,OsPAL, OsPAL08, PAL2, GP-28, GP28, PAL08, OsPAL2, OsPAL8, PAL8
37788	0	Li W., Xie T., Qiu Q., Ning T., Yang D.	A Short Peptide in rice glutelin Directs Trafficking of Protein into the Protein Storage Vacuoles of the Endosperm Cells	Plant Molecular Biology Reporter	31	1492-1505	2013	_,GLUA2	OsRMR3, OsRMR1, RMR1,  OsRING73, RING73,Glua2*, Glua2, GLUA-2, GluA-2, Glu20, GluA2, OsEnS-137
37789	0	Miao Y.a, Li R.a, Xiong F.a, Zeng Z.a, Niu X.b, Liu Y.a b	RNA interference vector construction, genetic transformation and function analysis of rice transcription factor OsMYB14	Chinese Journal of Applied and Environmental Biology	19	960-968	2013	MYB14	OsMYB14, OsJAdMYB1, JAdMYB1, Os2R_MYB12, 2R_MYB12 
37790	0	Xu G., Cui Y., Li M., Wang M., Yu Y., Zhang B., Huang L., Xia X.	OsMSR2, a novel rice calmodulin-like gene, confers enhanced salt tolerance in rice (Oryza sativa L.)	Aust J Crop Sci	7	368-373	2013	DREB2A,CML31	OsDREB2A, OsDREB2a, ERF40, OsERF#040, OsERF040, OsERF40, AP2/EREBP#167, AP2/EREBP167,OsCML31, OsMSR2, MSR2
37791	0	Wang H.a, Bian M.a, Yang Z.a, Lin C.a b, Shi W.a	Preliminary Functional Analysis of the Isoforms of OsHsfA2a (Oryza sativa L.) Generated by Alternative Splicing	Plant Molecular Biology Reporter	31	38-46	2013	HSFA2A	HSfA2a, OsHsfA2a, OsHsf-11, rHsf4, OsHSF11, HSF11, HSF4, RHSP2, OsHsfA2a-1, OsHsfA2a-2, OsHsfA2a-3, OsHsfA2a-4, OsHsfA2a-5, OsHsfA2a-6, OsHsfA2e, HsfA2e 
37792	0	Li S.a b, Luo G.a, Qiao F.a, Wang F.b, Zhao K.b, Wang C.b	Influence of Xanthomonas oryzae pv. oryzae PX099 Inoculation on Antioxidant Enzyme Activity and Defense Gene Expression in CBB23	Chinese Journal of Applied and Environmental Biology	19	980-985	2013	PR4,SH11,PR1B	OsPR4, OsPR4a, PR4a, OsPR-4,OsJAmyb, JAmyb, OsJAMyb, OsMYB21, MYB21, Os2R_MYB91, 2R_MYB91, OgSH11, OsSH11,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1, OsPR1a, PR1a
37793	0	Wang X.a b c, Chen J.a b c, Yang Y.a b c, Zhou J.a b c, Qiu Y.a b c, Yu C.a b c, Cheng Y.a b c, Yan C.a b c, Chen J.a b c	Characterization of a Novel NBS-LRR Gene Involved in Bacterial Blight Resistance in Rice	Plant Molecular Biology Reporter	31	649-656	2013	PR1-12,PR1-51,_,TPS30,HAC1;2,PR1B	OsPR1#012, PR1#012, OsPR1-12, OsPR1.1, PR1.1,OsPR1#051, OsPR1-51,OsRP1L1, RP1L1, OsBBR1, BBR1, rNBS33,TPS, OsTPS30, TPS26, OsTPS26,OsStr6, STR6, OsRhST, RLD, OsHAC1;2,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1, OsPR1a, PR1a
37794	0	Zhuang J.a, Jiang H.H.b, Wang F.a, Peng R.H.b, Yao Q.H.b, Xiong A.S.a	A Rice OsAP23, Functioning as an AP2/ERF Transcription Factor, Reduces Salt Tolerance in Transgenic Arabidopsis	Plant Molecular Biology Reporter	31	1336-1345	2013	ERF12,ERF92,ERF88	OsERF#012, OsERF012, OsERF12, OsDERF1, DERF1, AP2/EREBP#070, AP2/EREBP70,OsERF#092, OsERF092, OsERF92, ERF922, OsERF922, AP2/EREBP#078, AP2/EREBP78,OsERF#088, OsERF088, OsERF88, AP2/EREBP#024, AP2/EREBP24, OsAP23
37795	0	Xu G., Li M., Huang M., Cui Y., Wang M., Xia X.	The Negative Regulator OsSDS1 Significantly Reduces Salt and drought tolerance in Transgenic Arabidopsis	Plant Molecular Biology Reporter	31	517-523	2013	_	OsSDS1
37796	0	Cui Y.a b, Xu G.a, Wang M.a, Yu Y.a b, Li M.a b, da Rocha P.S.C.F.a, Xia X.a	Expression of OsMSR3 in Arabidopsis enhances tolerance to cadmium stress	Plant Cell Tissue Organ Cult.	113	331-340	2013	HSP18.0	OsHSP18.0-CI, HSP18.0-CI, OsHsp18.0, OsHSP18.0, Oshsp18.0, OsSHSP1, SHSP1, OsMSR3, MSR3, OsHSP20, HSP20, OsHSP18.6, HSP18.6
37797	0	Chen X.W.a, Wu F.Y.b, Li H.c, Chan W.F.a, Wu C.d, Wu S.C.e, Wong M.H.f	Phosphate transporters expression in rice (Oryza sativa L.) associated with arbuscular mycorrhizal fungi (AMF) colonization under different levels of arsenate stress	Environ. Exp. Bot.	87	92-99	2013		
37799	0	Naeem M.a c, Freed S.b, Quan Z.G.a	Molecular genetic studies of heading date gene OsMADS50 by using single segment substitution lines in Oryza sativa	Int J Agric Biol	15	631-639	2013	HD3A,MADS50,RFT1	Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,OsMADS50, AGL20, SOC1, OsSOC1, RMADS208, OsSOC1/ OsMADS50/DTH3, DTH3, OsDTH3,FT-L 3, OsFTL3, FTL3, FT-L3, RFT, OsRFT1
37800	0	Liu Y.a, Donner E.b, Lombi E.b, Li R.c, Wu Z.a, Zhao F.J.d e, Wu P.a	Assessing the contributions of lateral roots to element uptake in rice using an auxin-related lateral root mutant	Plant Soil	372	125-136	2013	IAA11	OsIAA11
37801	24280537	Zhang F.a, Luo X.a, Hu B.b, Wan Y.b, Xie J.a	YGL138(t), encoding a putative signal recognition particle 54 kDa protein, is involved in chloroplast development of rice	Rice (N Y)	6	7	2013	YGL138	YGL138(t), SRP54, OsSRP54, OscpSRP54a, cpSRP54a, PGL14, OsPGL1, PGL1
37802	24295067	Wankhede D.P.a, Kumar K.a b, Singh P.a, Sinha A.K.a	Involvement of mitogen activated protein kinase kinase 6 in UV induced transcripts accumulation of genes in phytoalexin biosynthesis in rice	Rice (N Y)	6	35	2013	KS4,MKK1,MAS,CYP99A3,MKK6,SMG1	OsKS4, KS4, KSL4, OsKSL4, DTS2, OsDTS2, OsTPS16, TPS16, TPS8, OsTPS8,OsMKK1, OsMEK2, MEK2, OsMAPKK1, MAPKK1, OsMAP2K2, MAP2K2,OsMAS, MAS1, OsMAS1, OsMAS/SDR110C-MS1, SDR110C-MS1, OsSDR110C-MS1, OsMS1, MS1,OsCYP99A3,OsMKK6, OsMEK1, MEK1, OsMAPKK6, MAPKK6, OsMPKK6, MPKK6, OsMAP1, MAP1,OsMKK4, MKK4, OsMKK4/SMG1, OsMAPKK4, MAPKK4, OsMEK4, MEK4, OsSMG1, SMG1/OsMEK6, OsMEK6, MEK6, OsSTS, STS
37803	0	Chatterjee J., Patra B., Mukherjee R., Basak P., Mukherjee S., Ray S., Bhattacharyya S., Maitra S., GhoshDastidar K., Ghosh S., Sengupta S., Majumder A.L.	Cloning, characterization and expression of a chloroplastic fructose-1,6-bisphosphatase from Porteresia coarctata conferring salt-tolerance in transgenic tobacco	Plant Cell Tissue Organ Cult.	114	395-409	2013	_,MOC2	OsCFR,FR, OsFR, FBP1, OsFBP1, OsMOC2, OscFBP1, cFBP1, MOC2/FBP1
37804	0	Kantama L.a, Junbuathong S.b, Sakulkoo J.c, de Jong H.e, Apisitwanich S.c d	Epigenetic changes and transposon reactivation in Thai rice hybrids	Molecular Breeding	31	815-827	2013	MASHU,STOW-OS1	Mashu,Stow-Os1
37805	0	Baldoni E.a, Genga A.a, Medici A.a b, Coraggio I.a, Locatelli F.a	The OsMyb4 gene family: Stress response and transcriptional auto-regulation mechanisms	Biol. Plant.	57	691-700	2013	_,MYB9,2R_MYB80,_,MYB30	OsMYB4, Osmyb4, OsMyb4, MYB4, OsMYB55, MYB55, OsMyb8, MYB8, OsMYB13b, MYB13b, OsMYB15, MYB15, Os2R_MYB46, 2R_MYB46,OsMyb9, OsMyb8, OsMYB110, Myb9, Myb8, MYB110, Os2R_MYB87, 2R_MYB87,Os2R_MYB80,OsMYB58/63-L, MYB58/63-L, OsMYB58/63a, MYB58/63a, Os2R_MYB29, 2R_MYB29, OsMYB58, MYB58,OsMYB30, OsMYB5P, MYB5P, OsMYB13a, MYB13a, Os2R_MYB26, 2R_MYB26, OsMYB30C, MYB30C
37806	0	Yooyongwech S.a, Cha-um S.b, Supaibulwatana K.c	Water relation and aquaporin genes (PIP1;2 and PIP2;1) expression at the reproductive stage of rice (Oryza sativa L. spp. indica) mutant subjected to water deficit stress	Plant OMICS	6	79-85	2013	PIP1;2,PIP2A	OsPIP1;2, PIP1-2, OsPIP1-2,OsPIP2a, PIP2-1, PIP2a, PIP2.1, OsPIP2;1, PIP2;1, OsPIP2-1
37807	24016103	Goli?? J.a b, Humlov? Z.c, Halada P.a, H?bov? V.a, Janatkov? I.c, Tu?kov? L.a	Identification of rice proteins recognized by the IgE antibodies of patients with food allergies	J. Agric. Food Chem.	61	8851-8860	2013		
37808	0	Zaplin E.S.a b c, Liu Q.a c, Li Z.a c, Butardo Jr V.M.a c, Blanchard C.L.b, Rahman S.a c d	Production of high oleic rice grains by suppressing the expression of the OsFAD2-1 gene	Functional Plant Biology	40	996-1004	2013	FAD2-3,FAD2-2,FAD2-4,FAD2-1	OsFAD2-3, OsaFAD2-2, FAD2-2,OsFAD2-2, OsaFAD2-3, FAD2-3,OsFAD2-4,OsFAD2, OsFAD2-1, OsaFAD2-1
37810	0	Wei M.Y., Chao Y.Y., Kao C.H.	NaCl-induced heme oxygenase in roots of rice seedlings is mediated through hydrogen peroxide	Plant Growth Regul.	69	209-214	2013	SE5	Se5, OsHO1, OsHO-1, OsHY1, HO-1, HO1, OsSE5, YGL2, YGL2/HO1
37811	0	Kim H.J.a c, Kieber J.J.b, Schaller G.E.a	The rice F-box protein KISS ME DEADLY2 functions as a negative regulator of cytokinin signaling	Plant Signaling and Behavior	8		2013	_,_,_,FBOX314	OsKMD4, OsFbox596, Os_F0436,  OsFBK25, FBK25,OsKMD3, OsFbox096, OsFbox96, Os_F0169,  OsFBK8, FBK8,OsKMD1, OsFbox074, OsFbox74, Os_F0323,  OsFBK4, FBK4,OsKMD2, KMD2, OsFbox314, Fbox314, Os_F0507, OsFBK16, FBK16
37812	0	Yoo S.C., Cho S.H., Paek N.C.	Rice WUSCHEL-related homeobox 3A (osWoX3a) modulates auxin-transport gene expression in lateral root and root hair development	Plant Signaling and Behavior	8		2013	NAL3,NAL2	nal3(nal2), nal2, nal3, cul3, OsWOX3A, WOX3A, WOX3, OsWOX3, OsNS, OsNS1/OsNS2, OsPRS,nal2, nal3, cul2, OsWOX3A, WOX3A, Os NS, NS, OsNS, OsWOX3, OsNS1/OsNS2, OsPRS
37813	23199687	Son Y.S., Im C.H., Kim D.W., Bahk J.D.	OsRab11 and OsGAP1 are essential for the vesicle trafficking of the vacuolar H+-ATPase OsVHA-a1 under high salinity conditions	Plant Science	198	58-71	2013	_,_,GAP1	OsRab11D1, OsRab11, Rab11, ric2,OsVHA-a1,OsGAP1
37814	23381136	Li-Hua Zhao, X Edward Zhou, Zhong-Shan Wu, Yi W., Xu Y., Li S., Ting-Hai Xu, Liu Y., Run-Ze Chen, Kovach A., Kang Y., Hou L., He Y., Xie C., Song W., Zhong D., Xu Y., Wang Y., Li J., Zhang C., Melcher K., H Eric Xu	Crystal structures of two phytohormone signal-transducing alpha/beta hydrolases: karrikin-signaling KAI2 and strigolactone-signaling DWARF14.	Cell Res.	23(3)	436-9	2013	D14	d14(d10), dwf13, d10, d14, D88, HTD2, OsHTD2, OsD14, qPPB3, D88/D14, HTD4
37815	21781332	Fan L., Wang Z., Liu J., Guo W., Yan J., Huang Y.	A survey of green plant tRNA 3'-end processing enzyme tRNase ZS, homologs of the candidate prostate cancer susceptibility protein ELAC2.	BMC Evol. Biol.	11	219	2011	TMS5,TRZ2,TRZ3	TRZ1, OsTRZ1, OsaTRZ1, OsTMS5,OsaTRZ2, OsTRZ2,OsaTRZ3, OsTRZ3
37816	23698632	Lim S.D., Cho H.Y., Park Y.C., Ham D.J., Lee J.K., Jang C.S.	The rice RING finger E3 ligase, OsHCI1, drives nuclear export of multiple substrate proteins and its heterogeneous overexpression enhances acquired thermotolerance.	J. Exp. Bot.			2013	HCI1,_,_,_,POX22.3,GF14D,_	OsHCI1, E3UL, OsRING206, RING206,OsPAG1, OsPSA7,OsBGLU1,OsGRP1, GRP1, OsGPRP3, GPRP3 ,POX22.3, OSPER, OsPOX, POX, Pir3, prx111, POX22, OsPOX1, POX1, OsPOX22.3, OsPR9, PR9,GF14d, OsGF14d, Os14-3-3, 14-3-3d,OsbHLH065, OsbHLH65
37817	24333854	Han J., Li A., Liu H., Wen X., Zhao M., Korir N.B., Korir N.K., Wang C., Fang J.	Computational identification of microRNAs in the strawberry (Fragaria x ananassa) genome sequence and validation of their precise sequences by miR-RACE.	Gene	536(1)	151-62	2014		
37818	24297875	Fujita D., Trijatmiko K.R., Tagle A.G., Sapasap M.V., Koide Y., Sasaki K., Tsakirpaloglou N., Gannaban R.B., Nishimura T., Yanagihara S., Fukuta Y., Koshiba T., Slamet-Loedin IH., Ishimaru T., Kobayashi N.	NAL1 allele from a rice landrace greatly increases yield in modern indica cultivars.	Proc. Natl. Acad. Sci. U.S.A.	110(51)	20431-6	2013	NAL1	nal1, cul1, GPS, SPIKE, SPIKE/LSCHL4/NAL1/GPS, SPIKE/NAL1, LSCHL4, OsNAL1
37819	24433207	Tian J., Isemura T., Kaga A., Vaughan D.A., Tomooka N.	Genetic diversity of the rice bean (Vigna umbellata) genepool as assessed by SSR markers.	Genome	56(12)	717-27	2013		
37820	24336204	Smith S.M.	Plant biology: Witchcraft and destruction.	Nature	504(7480)	384-5	2013	D14,D53,D3	d14(d10), dwf13, d10, d14, D88, HTD2, OsHTD2, OsD14, qPPB3, D88/D14, HTD4,D53(D K3), DK3, Dwf34, SMXL6/7/8, OsD53,d3, dwf3, D3/OsMAX2, Os_F0760, SOL1, OsORE9, ORE9, MAX2, OsRFPH2-10, RFPH2-10, OsD3,  OsFBL27, FBL27
37821	24365594	Chen X., Hu J., Zhang H., Ding Y.	DNA methylation changes in photoperiod-thermo-sensitive male sterile rice PA64S under two different conditions.	Gene	537(1)	143-8	2014	_,NAD7,VIP2,PETA,PSBD,PSAA	mat-r, mat-r-1,nad7,IPI1, RIP1, OsVIP2, OsIPI1, OsRIP1,  OsRING103, RING103,petA, Cytf, cytF, Cyt f, OsPETA,psbD, D2, OsPsbD1, OsPsbD2,PsaA, psaA, PsAA1, psaA1
37822	24282300	Heslop-Harrison JS., Schwarzacher T.	Nucleosomes and centromeric DNA packaging.	Proc. Natl. Acad. Sci. U.S.A.	110(50)	19974-5	2013		
37823	24344283	Elliott J., Deryng D., M?ller C., Frieler K., Konzmann M., Gerten D., Glotter M., Fl?rke M., Wada Y., Best N., Eisner S., Fekete B.M., Folberth C., Foster I., Gosling S.N., Haddeland I., Khabarov N., Ludwig F., Masaki Y., Olin S., Rosenzweig C., Ruane A.C., Satoh Y., Schmid E., Stacke T., Tang Q., Wisser D.	Constraints and potentials of future irrigation water availability on agricultural production under climate change.	Proc. Natl. Acad. Sci. U.S.A.	111(9)	3239-44	2014		
37824	24564211	Liu Y.H., Zhang M., Wu C., Huang J.J., Zhang H.B.	DNA is structured as a linear "jigsaw puzzle" in the genomes of Arabidopsis, rice, and budding yeast.	Genome	57(1)	9-19	2014		
37825	24321689	Lin X., Yao Y., Jin M., Li Q.	Characterization of the Distal-less gene homologue, NlDll, in the brown planthopper, Nilaparvata lugens (St?l).	Gene	535(2)	112-8	2014		
37826	24363334	Hara Y., Yokoyama R., Osakabe K., Toki S., Nishitani K.	Function of xyloglucan endotransglucosylase/hydrolases in rice.	Ann. Bot.			2013	XTH20,XTH11,XTH19	OsXTH20, XET32,OsXTH11, XTR2, OsXTR2, Meri-5,OsXTH19
37827	24361504	P?rez-Tienda J., Corr?a A., Azc?n-Aguilar C., Ferrol N.	Transcriptional regulation of host NH?? transporters and GS/GOGAT pathway in arbuscular mycorrhizal rice roots.	Plant Physiol. Biochem.	75	1-8	2014	AMT1;1,AMT2;1,AMT3;1,GLT2	OsAMT1;1, OsAMT1:1, OsAMT1, AMT1-1, AMT1, OsAMT1p, OsAMT1-1, Osamt1-1, "OsAMT1,1", OsAMT1.1, AMT1.1, FCO12,OsAMT2;1, AMT2-1, OsAMT2.1, AMT2.1,OsAMT3;1, AMT3-1, OsAMT3.1, OsAMT2;2,OsGLT2, OsNADH-GOGAT2, NADH-GOGAT2, OsGOGAT2, GOGAT2, OsGLU2, GLU2
37828	24459431	Rerksiri W., Zhang X., Xiong H., Chen X.	Expression and promoter analysis of six heat stress-inducible genes in rice.	ScientificWorldJournal	2013	397401	2013	HSP90.1,DJC53,HSFB2C,PM1,HSFA2A,RAB16D	Hsp90, OsHSP90.1,OsDjC53, DjC53,HSfB2c, OsHsfB2c, OsHsf-24, HSF24, OsHSF24 ,AWPM-19, PM19, OsPM1, OsPM-1, OsPM19L1, PM19L1, OsAWPM-19, OsPM19,HSfA2a, OsHsfA2a, OsHsf-11, rHsf4, OsHSF11, HSF11, HSF4, RHSP2, OsHsfA2a-1, OsHsfA2a-2, OsHsfA2a-3, OsHsfA2a-4, OsHsfA2a-5, OsHsfA2a-6, OsHsfA2e, HsfA2e ,rab21, OsLEA26, Rab16D, OsRab16
37829	24371168	Yi J., Liu L., Cao Y., Li J., Mei M.	Cloning, characterization and expression of OsFMO(t) in rice encoding a flavin monooxygenase.	J. Genet.	92(3)	471-80	2013	YUCCA1,COW1	OsYUCCA1, OsYUC1, YUC1,OsCOW1, oscow1, OsYUC8, YUC8, NAL7, OsNAL7, OsYUCCA8, YUCCA8, FMO, OsFMO(t), REIN7, YUC8/REIN7
37830	24312593	Wang C., Wei Q., Zhang K., Wang L., Liu F., Zhao L., Tan Y., Di C., Yan H., Yu J., Sun C., Chen W.J., Xu W., Su Z.	Down-regulation of OsSPX1 causes high sensitivity to cold and oxidative stresses in rice seedlings.	PLoS ONE	8(12)	e81849	2013	SPX1	OsSPX1
37831	24365575	Trivedi D.K., Ansari M.W., Dutta T., Singh P., Tuteja N.	Molecular characterization of cyclophilin A-like protein from Piriformospora indica for its potential role to abiotic stress tolerance in E. coli.	BMC Res Notes	6	555	2013		
37832	24534105	Verma J.K., Gayali S., Dass S., Kumar A., Parveen S., Chakraborty S., Chakraborty N.	OsAlba1, a dehydration-responsive nuclear protein of rice (Oryza sativa L. ssp. indica), participates in stress adaptation.	Phytochemistry	100	16-25	2014	ALBA1	OsAlba1, Alba1
37833	24474801	Hu Y., Zhang J., Jia H., Sosso D., Li T., Frommer W.B., Yang B., White F.F., Wang N., Jones J.B.	Lateral organ boundaries 1 is a disease susceptibility gene for citrus bacterial canker disease.	Proc. Natl. Acad. Sci. U.S.A.	111(4)	E521-9	2014		
37834	24702065	Ge Z.Y., Wan P.J., Li G.Q., Xia Y.G., Han Z.J.	Characterization of cysteine protease-like genes in the striped rice stem borer, Chilo suppressalis.	Genome	57(2)	79-88	2014		
37835	24393458	Breitenbach J., Bai C., Rivera S.M., Canela R., Capell T., Christou P., Zhu C., Sandmann G.	A novel carotenoid, 4-keto-alpha-carotene, as an unexpected by-product during genetic engineering of carotenogenesis in rice callus.	Phytochemistry	98	85-91	2014		
37836	24583583	Huang B.E., Raghavan C., Mauleon R., Broman K.W., Leung H.	Efficient Imputation of Missing Markers in Low-Coverage Genotyping-by-Sequencing Data from Multi-Parental Crosses.	Genetics	197(1)	401-4	2014		
37837	24563202	Barakate A., Higgins J.D., Vivera S., Stephens J., Perry R.M., Ramsay L., Colas I., Oakey H., Waugh R., Franklin F.C., Armstrong S.J., Halpin C.	The Synaptonemal Complex Protein ZYP1 Is Required for Imposition of Meiotic Crossovers in Barley.	Plant Cell	26(2)	729-40	2014		
37838	24583172	Qu X., Jiang J., Shang X., Cheng C., Feng L., Liu Q.	Construction and analysis of gonad suppression subtractive hybridization libraries for the rice field eel, Monopterus albus.	Gene	540(1)	20-5	2014		
37839	24525402	Chen Y., Cao J.	Comparative genomic analysis of the Sm gene family in rice and maize.	Gene	539(2)	238-49	2014	_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,CYP7,_,_,_,_	,,,,,,,,,,,,,,,,,,,,OsCYP-7,,,,
37840	24642938	Chen X.L., Shi T., Yang J., Shi W., Gao X., Chen D., Xu X., Xu J.R., Talbot N.J., Peng Y.L.	N-Glycosylation of Effector Proteins by an alpha-1,3-mannosyltransferase Is Required for the Rice Blast Fungus to Evade Host Innate Immunity.	Plant Cell	26(3)	1360-76	2014		
37841	24670769	Yvon-Durocher G., Allen A.P., Bastviken D., Conrad R., Gudasz C., St-Pierre A., Thanh-Duc N., del Giorgio PA.	Methane fluxes show consistent temperature dependence across microbial to ecosystem scales.	Nature	507(7493)	488-91	2014		
37842	24654274	Gewin V.	Retractions: A clean slate.	Nature	507(7492)	389-91	2014		
37843	24631263	Hwang S.G., Kim D.S., Hwang J.E., Han A.R., Jang C.S.	Identification of rice genes associated with cosmic-ray response via co-expression gene network analysis.	Gene	541(2)	82-91	2014	_,_,EIF6;2,SUI1,NAC85,_,UGT74J5,NAC122,_	UNP2,GID1, GID1L2,Os-eIF6;2, eIF6;2, OseIF6.2, eIF6.2,UNP1, OsSUI1,ONAC085, ONAC85,UDP-GT, OsENOD93-1,UDP-GT, Os79, OsUGT74J5,OsNAC10, NAC10, ONAC122, NAC122, OsSNAC10, SNAC10,OsFbox481, Os_F0362, FBX322, OsFBX322,  OsFBX322, FBX322
37844	24424778	Wang X., Kudrna D.A., Pan Y., Wang H., Liu L., Lin H., Zhang J., Song X., Goicoechea J.L., Wing R.A., Zhang Q., Luo M.	Global Genomic Diversity of Oryza sativa Varieties Revealed by Comparative Physical Mapping.	Genetics	196(4)	937-49	2014		
37845	24657062	Faris J.D., Zhang Z., Chao S.	Map-based analysis of the tenacious glume gene Tg-B1 of wild emmer and its role in wheat domestication.	Gene	542(2)	198-208	2014		
37846	24633159	Li Y., Fan C., Xing Y., Yun P., Luo L., Yan B., Peng B., Xie W., Wang G., Li X., Xiao J., Xu C., He Y.	Chalk5 encodes a vacuolar H(+)-translocating pyrophosphatase influencing grain chalkiness in rice.	Nat. Genet.	46(4)	398-404	2014	CHALK5	Chalk5, OsChalk5
37847	24434551	Seto Y., Sado A., Asami K., Hanada A., Umehara M., Akiyama K., Yamaguchi S.	Carlactone is an endogenous biosynthetic precursor for strigolactones.	Proc. Natl. Acad. Sci. U.S.A.	111(4)	1640-5	2014	D10,D14	d10(d15,d16), d16, d15, dwf9, d10, OsCCD8b, OsCCD8, CCD8, OsD10,d14(d10), dwf13, d10, d14, D88, HTD2, OsHTD2, OsD14, qPPB3, D88/D14, HTD4
37848	24482191	Yamada N., Theerawitaya C., Cha-Um S., Kirdmanee C., Takabe T.	Expression and functional analysis of putative vacuolar Ca(2+)-transporters (CAXs and ACAs) in roots of salt tolerant and sensitive rice cultivars.	Protoplasma			2014	ACA4,ACA6,ACA7,ACA5,CAX4	osACA4, OsACA8, ACA8, OsACA4,osACA6, OsACA1, OsACA6, OsPM1ATPaseII, ACA3,osACA7, OsACA6, ACA6, OsACA7, OsPM5ATP4, PM5ATP4 ,osACA5, OsACA9, ACA9, OsACA5, OsPM12ATP4, PM12ATP4,CAX2, OsCAX2, OsCAX4, OsSTA47, OsNCX3, NCX3
37849	24563249	Kunihiro S., Kowata H., Kondou Y., Takahashi S., Matsui M., Berberich T., Youssefian S., Hidema J., Kusano T.	Overexpression of rice OsREX1-S, encoding a putative component of the core general transcription and DNA repair factor IIH, renders plant cells tolerant to cadmium- and UV-induced damage by enhancing DNA excision repair.	Planta	239(5)	1101-11	2014	_	OsREX1-S
37850	24482436	Chen X., Zuo S., Schwessinger B., Chern M., Canlas P.E., Ruan D., Zhou X., Wang J., Daudi A., Petzold C.J., Heazlewood J.L., Ronald P.C.	An XA21-Associated Kinase (OsSERK2) Regulates Immunity Mediated by the XA21 and XA3 Immune Receptors.	Mol Plant	7(5)	874-92	2014	D61,FLS2,XA3,PR10B,XA21,MAS,SERK1,SG2	d61*, dwf42, d61, OsBRI1, OSBRI1, BRI1, Os BRI1, Osbri1, OsBRKq1, BRKq1,Os-FLS2, OsFLS2, OsCLV2f, CLV2f,Xa-3, Xa3 (Xa4b, Xa6, Xa9, Xa w), Xa3, Xaw, Xa6, Xa9, Xa4-b, XA26, Xa26(t), Xa26(t)*, Xa26, RKb, MRKb, MRKB, TRKb, Xa3/Xa26,RPR10b, PR-10b, PR10b, PBZ1, PBZ-1, OsPBZc, OsPR10b, BetV, OsBetV,Xa21*, Xa21, OsXA21,OsMAS, MAS1, OsMAS1, OsMAS/SDR110C-MS1, SDR110C-MS1, OsSDR110C-MS1, OsMS1, MS1,OsSERK1, OsSERK2, OsBiSERK1, SERK2, BiSERK1, OsSerk2, OsBAK1-2,OsSERK1, SERK1, OsBAK1, BAK1, OsSERK1/OsBAK1, OsBISERK1, BISERK1, OsSerk1, OsBAK1-1, 08SG2/OsBAK1, 08SG2, OsSG2
37851	24634487	Yamaya T., Kusano M.	Evidence supporting distinct functions of three cytosolic glutamine synthetases and two NADH-glutamate synthases in rice.	J. Exp. Bot.			2014	GLT1,GLT2,GLN1;2,GLN1;3,GLN1;1	OsGLT1, OsNADH-GOGAT1, NADH-GOGAT1, OsNADH-GOGAT, GOGAT, NADH-GOGAT, OsGOGAT1, GOGAT1, OsGLU1,OsGLT2, OsNADH-GOGAT2, NADH-GOGAT2, OsGOGAT2, GOGAT2, OsGLU2, GLU2,OsGLN1;2, GSr, RGS8, OsGS1;2, GS1;2, GS1, OsGS1-2, GS1-2, OsGS1.2, GS1.2,OsGLN1;3, OsGS1;3, GS1;3,OsGLN1;1, GS1, RGS28, OsGS1;1, GS1;1, OsGS, GS1, OsGS1, GLN1-1, OsGS1-1, GS1-1, GS1.1, OsGS1.1
37852	24492654	Tiwari M., Sharma D., Singh M., Tripathi R.D., Trivedi P.K.	Expression of OsMATE1 and OsMATE2 alters development, stress responses and pathogen susceptibility in Arabidopsis.	Sci Rep	4	3964	2014	MATE1,MATE2	OsMATE1, OsMATE9, MATE9,OsMATE2
37853	24617729	Ke Y., Liu H., Li X., Xiao J., Wang S.	Rice OsPAD4 functions differently from Arabidopsis AtPAD4 in host-pathogen interactions.	Plant J.	78(4)	619-31	2014	PAD4	OsPAD4
37854	24577486	Tanaka N., Uraguchi S., Fujiwara T.	Exogenous Boron supplementation partially rescues fertilization defect of osbor4 mutant.	Plant Signal Behav	9(2)	e28356	2014	BOR4	OsBOR4
37855	24398379	Sahoo R., Tuteja N.	OsSUV3 functions in cadmium and zinc stress tolerance in rice (Oryza sativa L. cv IR64).	Plant Signal Behav	9(1)	e27389	2014	_	OsSUV3, SUV3
37856	24578505	Sun L.J., Zhang Q., Wu J.X., Zhang L.Q., Jiao X.W., Zhang S.W., Zhang Z.G., Sun D.Y., Lu T.G., Sun Y.	Two rice histidine phosphotransfer proteins, OsAHP1 and OsAHP2, mediate cytokinin signaling and stress responses in rice.	Plant Physiol.	165(1)	335-45	2014	PHP1,AHP2,PHP3,NHX1,PHP2,AHP1,SOS1,HKT1	OsPHP1, Hpt1, OsHP3, sHP3, OsHpt1,OHP2, HPt, OsAHP2 Hpt3, Ohp2, OsHP1, HP1, OsHpt3, OsHP01,OsPHP3, Hpt5, OsHP4, HP4, OsHpt5, OsHpt5a, OsHpt5b, OsHpt5c,OsNHX1, OcNHX1, OgNHX1, OrNHX1, OpNHX1, ObNHX1,OsPHP2, Hpt4, OsHP5, HP5, OsHpt4, OsHP05,OHP1, HPt, OsAHP1, Hpt2, Ohp1, OsHP2, HP2, OsHpt2, OsHPt2, OsHP02,OsSOS1, OsNHA1, NHA1, SOS1/NHX7, NHX7, OsNHX7,OsHKT1, OsHKT2;1, HKT2;1, Ni (Nipponbare)-OsHKT1, Po (Pokkali)-HKT1, OsHKT1;1, HKT1;1
37857	24664473	Lim S.D., Hwang J.G., Han A.R., Park Y.C., Lee C., Ok Y.S., Jang C.S.	Positive regulation of rice RING E3 ligase OsHIR1 in arsenic and cadmium uptakes.	Plant Mol. Biol.	85(4-5)	365-79	2014	_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,C3H15,_,_,_,_,RFPH2-8,TIP4;1,_,HIR1,RFPHC-2,RFPH2-9,RFPH2-15,RFPHC9,SIP13 ,NLA1,RFPHC-1,HAIKU2,_,_,_,_,RFPV1,RFI2,RFPHC14,RFPV6,_,TTL1,HSA32,HRZ2,_	OsOTU1,OsRFPH2-1,  OsRING310, RING310,OsRFPH2-4,  OsRING91, RING91,OsRFPH2-14,  OsRING130, RING130,OsRFPH2-17,  OsRING358, RING358,OsRFPH2-20,  OsRING144, RING144,OsRFPH2-21,  OsRING247, RING247,OsRFPH2-23,  OsRING146, RING146,OsRFPHC-6,  OsRING99, RING99,XBOS31, OsRFPHC-7,  OsRING222, RING222,OsRFPHC-11,  OsRING376, RING376,OsRFPH2-16, OsGIRP1,  OsRING32, RING32,OsRFPH2-2,  OsRING323, RING323,OsRFPH2-6,  OsRING47, RING47,OsRFPH2-7,  OsRING296, RING296,OsRFPH2-13,OsRFPHC-8,  OsRING114, RING114,OsRFPH2-19,  OsRING373, RING373,OsRFPHC-15,  OsRING186, RING186,OsRFPV-3,  OsRING185, RING185,OsRFPV-4,  OsRING136, RING136,OsRFPV-5,  OsRING235, RING235,OsRFPH2-11, OsHIR1,  OsRING123, RING123,OsC3H15, OsRFPHC-3,  OsRING268, RING268,OsRFPH2-12,  OsRING176, RING176,OsRFPV-2,  OsRING231, RING231,OsRFPH2-22,  OsRING38, RING38,OsRab1B2, OsRas1,OsRFPH2-8,,  OsRING68, RING68,OsTIP4;1, TIP4-1,OsRFPHC-12, RFPHC-12, DLN116, OsDLN116,  OsRING385, RING385,OsHIR1, OsHSI1,OsRFPHC-2, OsRING87, RING87, OsvWA25, vWA25, OsRGLG4, RGLG4,OsRFPH2-9, OsRING129, RING129, OsvWA8, vWA8,OsRFPH2-15,  OsRING316, RING316, OsvWA6, vWA6,OsRFPHC-9, RFPHC-9, RIP4, OsRIP4,  OsRING75, RING75,OsRFPHC-10, RFPHC-10, OsSIP13 ,  OsRING413, RING413,OsRFPHC-13, OsNLA, NLA, OsNLA1, OsNLA1.1, OsNLA1.2, OsNLA1.3,  OsRING269, RING269,OsRFPHC-1, OsNLA2, NLA2, OsNLA2.1, OsNLA2.2, OsRING348, RING348,OsHAIKU2, OsRLK7, RLK7, OsMEG1, MEG1,OsRFPHC-5, RFPHC-5,  OsRING404, RING404,OsRFPHC-4,  OsRING205, RING205,OsRFPHC-16,  OsRING322, RING322,OsRFPH2-18,  OsRING175, RING175,OsRFPV-1,  OsRING102, RING102,OsRFPH2-10, RFPH2-10, OsRFI2, UCIP1, OsUCIP1,  OsRING344, RING344,OsRFPHC-14, RFPHC-14, OsSTA9, RIP3, OsRIP3,  OsRING79, RING79,OsRFPV-6,  OsRFPv6, OsRING135, RING135,OsRFPH2-5, DLN133, OsDLN133,  OsRING36, RING36,OsRFPV-7, RFPV-7, OsRFPV7, RFPV7, OsRING200, RING200, OsTTL1,Hsa32, OsPPS1 ,OsRFPH2-24, OsHRZ2, OsRING150, RING150, CLG1, OsCLG1,OsRFPH2-3,  OsRING217, RING217
37858	24564817	Guimaraes C.T., Simoes C.C., Pastina M.M., Maron L.G., Magalhaes J.V., Vasconcellos R.C., Guimaraes L.J., Lana U.G., Tinoco C.F., Noda R.W., Jardim-Belicuas SN., Kochian L.V., Alves V.M., Parentoni S.N.	Genetic dissection of Al tolerance QTLs in the maize genome by high density SNP scan.	BMC Genomics	15	153	2014		
37859	24442518	Singh I., Shah K.	Evidences for structural basis of altered ascorbate peroxidase activity in cadmium-stressed rice plants exposed to jasmonate.	Biometals	27(2)	247-63	2014	APX1	OsAPX1, APXa, OsAPXa, OsAPx01, OsAPx1, OSAPX1, APx1, cAPX, APX2, cAPXa, OscAPXa
37860	24506212	Wang W., Xie Z.P., Staehelin C.	Functional analysis of chimeric lysin motif domain receptors mediating Nod factor-induced defense signaling in Arabidopsis thaliana and chitin-induced nodulation signaling in Lotus japonicus.	Plant J.	78(1)	56-69	2014	CEBIP,CERK1	CEBiP, Os-LYP1, LYP1, OsCEBiP,OsCERK1, OsLysM-RLK9, Os-CERK1, Os-LysM-RLK9, OsLysMRLK9, OsCERK1/OsLYK9, OsLYK9, LYK9
37861	24627964	Uraguchi S., Kamiya T., Clemens S., Fujiwara T.	Characterization of OsLCT1, a cadmium transporter from indica rice (Oryza sativa).	Physiol Plant	151(3)	339-47	2014	LCT1	OsLCT1
37862	24412327	Zou Y., Liu X., Wang Q., Chen Y., Liu C., Qiu Y., Zhang W.	OsRPK1, a novel leucine-rich repeat receptor-like kinase, negatively regulates polar auxin transport and root development in rice.	Biochim. Biophys. Acta	1840(6)	1676-1685	2014	_,PIN10B,PIN5B,PIN8,PIN5C,PIN10A,PIN1D,PIN5A,PIN1C,PIN9,LRA1,PIN1B,PIN1A	OsRPK1,PIN3B, OsPIN3b, OsPIN10b,PIN5C, OsPIN5c, OsPIN5b, PIN4,OsPIN8,PIN5B, OsPIN5b, OsPIN5c,PIN3A, OsPIN3a, OsPIN3t, OsPIN10a, OsPIN3,OsPIN1D, OsPIN1d,OsPIN5a, OsPIN6,PIN1B, OsPIN1B, OsPIN1b, OsPIN1c,OsPIN9,OsPIN2, PIN2, OsLRA1, WAR1, OsWAR1,PIN1A, OsPIN1A, OsPIN1a, REH1, OsPIN1, OsPIN1b, REH1/OsPIN1,PIN1C, OsPIN1C, OsPIN1c, OsPIN1a
37863	24619164	Qi Y., Liu Q., Zhang L., Mao B., Yan D., Jin Q., He Z.	Fine mapping and candidate gene analysis of the novel thermo-sensitive genic male sterility tms9-1 gene in rice.	Theor. Appl. Genet.	127(5)	1173-82	2014	PTC1	OsMS1, tms9-1, OsPTC1, MS1, TMS9-1, OsTMS9-1
37864	24452439	Zhang Y., Miao X., Xia X., He Z.	Cloning of seed dormancy genes (TaSdr) associated with tolerance to pre-harvest sprouting in common wheat and development of a functional marker.	Theor. Appl. Genet.	127(4)	855-66	2014	VP1,SDR4	Vp1* (OSVP1), OsVP1, OsVp1, Vp1, ABI3, OsABI3, OsLFL4, OsVp-1, OSVP1,Sdr4, OsSdr4, OsSdr4-n, OsSdr4-k, OsSdr4L, Sdr4L 
37865	24684436	Duan L., Liu H., Li X., Xiao J., Wang S.	Multiple phytohormones and phytoalexins are involved in disease resistance to Magnaporthe oryzae invaded from roots in rice.	Physiol Plant			2014	PAL1,_,_,_,PAL1,PAL,_,_,ICS1,CHS	OsPAL, Pal1*, Pal1, PAL, Pal_1, PalI, PAL2, OsPAL01, PAL01, OSPAL, CP-1, GP-1, OsPAL1, PAL3, OsPAL3,OsPAL05, PAL05, OsPAL3, PAL5, PAL3, OsPAL2;3, PAL2;3, OsPAL2-1, PAL2-1,OsPAL07, OsPAL, PAL07, OsPAL6, PAL6, PAL1, OsPAL7, PAL7,OsPAL03, OsPAL9, TAM1, OsTAM1, TAM, OsTAM,OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6,OsPAL, OsPAL08, PAL2, GP-28, GP28, PAL08, OsPAL2, OsPAL8, PAL8,OsPAL02, PAL02, OsPAL5, PAL5, OsPAL2. PAL2, OsPAL1,OsPAL04, PAL04, PAL, OsPAL7, PAL7,OsICS1, OsICS, ICS,CHS*, Oschs, chs, chas, OsCHS, OsCHS1, CHS1, OsPKS26, PKS26, OsCHS24, CHS24, OsCHS27, CHS27
37866	24688390	Peng X., Ding X., Chang T., Wang Z., Liu R., Zeng X., Cai Y., Zhu Y.	Overexpression of a Vesicle Trafficking Gene, OsRab7, Enhances salt tolerance in Rice.	ScientificWorldJournal	2014	483526	2014	RAB7B3	OsRab7B3, Rab7B3, OsRab7, Rab7
37867	24430865	Jiang Q., Ma X., Gong X., Zhang J., Teng S., Xu J., Lin D., Dong Y.	The rice osdg2 encoding a glycine-rich protein is involved in the regulation of chloroplast development during early seedling stage.	Plant Cell Rep.	33(5)	733-44	2014	_	OsDG2
37868	24475234	Shan C., Mei Z., Duan J., Chen H., Feng H., Cai W.	OsGA2ox5, a gibberellin metabolism enzyme, is involved in plant growth, the root gravity response and salt stress.	PLoS ONE	9(1)	e87110	2014	GA2OX5	OsGA2ox5, 2-ODD32, Os2-ODD32, 2ODD32, Os2ODD32
37869	24486766	Aya K., Hobo T., Sato-Izawa K., Ueguchi-Tanaka M., Kitano H., Matsuoka M.	A Novel AP2-Type Transcription Factor, SMALL ORGAN SIZE1, Controls Organ Size Downstream of an Auxin Signaling Pathway.	Plant Cell Physiol.	55(5)	897-912	2014	NGR5,_,XTH20,TUB6,_,PHI1,RPA1,PLT9,ARF1	ERF142, OsERF#142, OsERF142, AP2/EREBP#049, AP2/EREBP49, SMOS1, OsSMOS1, SHB, OsAP2-EREBP-049, RLA1, RLA1/SMOS1, OsERF142/SMOS1, OsNGR5, GR5, OsGR5,OsARGOS ,OsXTH20, XET32,OsTUB6, TUBB6,,OsPHI1, OsPHI-1, PHI-1,OsRPA1, OsRPA70b, RPA70b,OsPLT9, AP2/EREBP#137, AP2/EREBP137, OsANT,OsARF1, arf1, OsARF23, ARF23
37870	24667379	Xiong H., Li J., Liu P., Duan J., Zhao Y., Guo X., Li Y., Zhang H., Ali J., Li Z.	Overexpression of OsMYB48-1, a Novel MYB-Related Transcription Factor, Enhances Drought and Salinity Tolerance in Rice.	PLoS ONE	9(3)	e92913	2014	NCED2,MYB48,LEA3-1,SAPK6,RAB16D,ALDH18B2,RAB16C,NCED3,RAB16A,P5CS,PP2C1	OSNCED2, OsNCED2, OsNCED5, NCED5,OsMYB48, OsMYB48-1, OsMYB48-2, OsMYB59, MYB59, Os2R_MYB19, 2R_MYB19 ,OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3, OsLEA3A, LEA3A,OsSAPK6, OSRK1, OsSnRK2.6, SnRK2.6,rab21, OsLEA26, Rab16D, OsRab16,P5CS2, OsP5CS2, OsALDH18B2 ,rab21, OsLEA27, rab16C, OsRAB16C, DHD,OSNCED3, OsNCED-3, OsNCED3, OsNCED3a, NCED3a, OsNCED4, NCED4, OsNECD2, OsNCED2b, NCED2b ,Rab16A, rab21, RAB21, OsRab21, OsRAB21, OsRAB-21, OsRab16A, OsLEA29, rab16A, OsRAB16A,OsP5CS, P5CS1, OsP5CS1, OsALDH18B1, ALDH18B1, OsP5CS-1, P5CS-1,OsPP2C1, OsSIPP2C1, SIPP2C1, OsPP2C68, PP2C68, OsPP108
37871	24410960	Zhou G., Ren N., Qi J., Lu J., Xiang C., Ju H., Cheng J., Lou Y.	The 9-lipoxygenase Osr9-LOX1 interacts with the 13-lipoxygenase-mediated pathway to regulate resistance to chewing and piercing-sucking herbivores in rice.	Physiol Plant			2014	R9-LOX1	Osr9-LOX1, OsLOX3, LOX3
37872	24413763	Ou J., Guo Z., Shi J., Wang X., Liu J., Shi B., Guo F., Zhang C., Yang D.	Transgenic rice endosperm as a bioreactor for molecular pharming.	Plant Cell Rep.	33(4)	585-94	2014		
37873	24410953	Kaur C., Mustafiz A., Sarkar A.K., Ariyadasa T.U., Singla-Pareek SL., Sopory S.K.	Expression of abiotic stress inducible ETHE1-like protein from rice is higher in roots and is regulated by calcium.	Physiol Plant			2014	GLYII-1,GLYII-3,GLYII-2	OsGLYII1, GLYII1, OsETHE1, ETHE1, OsGLYII-1,OsGLYII3, GLYII3, gly II, OsGLYII-3,OsGLYII2, GLYII2, OsGLYII-2
37874	24381099	Wu C.S., Chen D.Y., Chang C.F., Li M.J., Hung K.Y., Chen L.J., Chen P.W.	The promoter and the 5'-untranslated region of rice metallothionein OsMT2b gene are capable of directing high-level gene expression in germinated rice embryos.	Plant Cell Rep.	33(5)	793-806	2014	MT2B	OsMT2b, MT2b, OsMT-I-2c, MT-I-2c, MT2C, MT2BL, OsMT2C, OsMT2BL, MTE, OsMT2b1, OsMT2b2, MT2b1, MT2b2, MTb, met1, OsMTe, OsMT-I-2c, OsB22EL8, MTe, MT-I-2c, B22EL8
37875	24492003	Kumagai S., Suzuki T., Tezuka K., Satoh-Nagasawa N., Takahashi H., Sakurai K., Watanabe A., Fujimura T., Akagi H.	Functional analysis of the C-terminal region of the vacuolar cadmium-transporting rice OsHMA3.	FEBS Lett.	588(5)	789-94	2014	GCC7	HMA3, OsHMA3, OsHMA3a, OsHMA3n, osHMA3, OsHMP34, HMP34
37876	24498911	Liu H., Bayer M., Druka A., Russell J.R., Hackett C.A., Poland J., Ramsay L., Hedley P.E., Waugh R.	An evaluation of genotyping by sequencing (GBS) to map the Breviaristatum-e (ari-e) locus in cultivated barley.	BMC Genomics	15	104	2014		
37877	24733018	Shao F., Lu S.	Identification, Molecular Cloning and Expression Analysis of Five RNA-Dependent RNA Polymerase Genes in Salvia miltiorrhiza.	PLoS ONE	9(4)	e95117	2014		
37878	24647160	Cai Q., Yuan Z., Chen M., Yin C., Luo Z., Zhao X., Liang W., Hu J., Zhang D.	Jasmonic acid regulates spikelet development in rice.	Nat Commun	5	3476	2014	COI1B,EG2,BHLH9,LHS1,EG1	OsCOI1b, COI1b, OsCOI1H, COI1H, OsFbox260, Fbox260, Os_F0646,  OsFBL23, FBL23, OsCOl-1, COl-1,OsTIFY3, OsJAZ10, OsJAZ 1, OsJAZ1, JAZ1, EG2/OsJAZ1, EG2, JAZ1/EG2,OsbHLH009, bHLH009, OsMYC2, MYC2,OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO, OsLHS1, OsLG3b, LG3b, qLGY3, LGY3, DLN80, OsDLN80, OLR, OsOLR, GW3p6, OsGW3p6, OsMADS1GW3p6, MADS1GW3p6, qLGY3/OsLG3b/GW3p6,eg1, GY1, OsEG1, OsGY1
37879	24551849	Macovei A., Garg B., Raikwar S., Balestrazzi A., Carbonera D., Buttafava A., Bremont J.F., Gill S.S., Tuteja N.	Synergistic exposure of rice seeds to different doses of gamma-ray and salinity stress resulted in increased antioxidant enzyme activities and gene-specific modulation of TC-NER pathway.	Biomed Res Int	2014	676934	2014	_,XPB2,_,_	OsTFIIS,OsXPB2,OsXPD, XPD ,OsTFIIS-like gene, OsMed26_3, Med26_3
37880	24709840	Zhou Y., Liu L., Huang W., Yuan M., Zhou F., Li X., Lin Y.	Overexpression of OsSWEET5 in Rice Causes Growth Retardation and Precocious Senescence.	PLoS ONE	9(4)	e94210	2014	TMT1,SAUR39,GH3-2,IAA24,SWEET5,IAA31,SUT1,SUT2,TMT2,PIN1B	OsTMT1, OsAZT4, AZT4,OsSAUR39,OsGH3-2, OsGH3.2, GH3.2,OsIAA24,OsSWEET5,OsIAA3, IAA3, OsIAA31, OsIAA30, IAA30,OsSUT1, OsSUT2,OsSUT2(t), SUT2M, OsSUT2, OsSUT2M, OsSUT5,OsTMT2, AZT1, OsAZT1,PIN1A, OsPIN1A, OsPIN1a, REH1, OsPIN1, OsPIN1b, REH1/OsPIN1
37881	24614601	Ohta M., Takaiwa F.	Emerging features of ER resident J-proteins in plants.	Plant Signal Behav	9(2)	e28194	2014	BIP4,_,_,_,_,_,BIP5,BIP1,ERDJ3B	OsBiP4, BiP4, OsMed37_5, Med37_5, BiP2,OsDjC15, OsP58B,OsDjC43, OsERdj2,OsDjC79, OsERdj7,OsDjC16, OsP58A,OsERdj3A, TMS1,OsBiP5, OsBiP, BiP, BiP5, OsMed37_7, Med37_7,OsBiP1, BiP1, BiP, Bip3, OsBiP3, BIP1/OsBIP3, OsMed37_2, Med37_2 ,OsDjB6, OsERdj3B, ERdj3B
37882	24597623	Wang S., Xu Y., Li Z., Zhang S., Lim J.M., Lee K.O., Li C., Qian Q., Jiang D.A., Qi Y.	OsMOGS is required for N-glycan formation and auxin-mediated root development in rice (Oryza sativa L.).	Plant J.	78(4)	632-45	2014	_,MDR13,MDR6,IAA1,SAUR39	OsMOGS,OsABCB14, ABCB14, OsPGP14, OsMDR13, OsABCB14_1, OsABCB14_2,OsABCB2, ABCB2, OsPGP2, OsMDR6, OsABCB2_1, OsABCB2_2,OsIAA1, OsIAA4,OsSAUR39
37883	24289830	Gong X., Su Q., Lin D., Jiang Q., Xu J., Zhang J., Teng S., Dong Y.	The rice OsV4 encoding a novel pentatricopeptide repeat protein is required for chloroplast development during the early leaf stage under cold stress.	J Integr Plant Biol	56(4)	400-10	2014	V4	OsV4
37884	24641694	Du H., Wu N., Cui F., You L., Li X., Xiong L.	A homolog of ETHYLENE OVERPRODUCER, osetol1, differentially modulates drought and submergence tolerance in rice.	Plant J.	78(5)	834-49	2014	_,_,_,_,AMY3D	OsETOL2,  OsBTBT2, BTBT2,OsETOL3,  OsBTBT3, BTBT3,OsACS2,OsETOL1, OsSTA97, ETOL1, STA97,  OsBTBT1, BTBT1,Amy3D/E*(RAmy3D/E), alpha Amy3, AmyII-4, AMY1.3, Amy3D, Amy3D/E*, RAmy3D/E, Amy3D_E, Amy8, aAmy3, RAmy3D, OsAmy3D, alphaAmy3, OsRamy3D
37885	24401104	Ye N., Yang G., Chen Y., Zhang C., Zhang J., Peng X.	Two hydroxypyruvate reductases encoded by OsHPR1 and OsHPR2 are involved in photorespiratory metabolism in rice.	J Integr Plant Biol	56(2)	170-80	2014	_,_	OsHPR1, HPR1,OsHPR2, HPR2, OsHPR2-1, OsHPR2-2
37886	24464125	Liang W.H., Wang H.H., Li H., Wang J.J., Yang D.D., Hao Y.F., Li J.J., Lou C., Lin Q.T., Hou C.Q.	Isolation and characterization of OsMY1, a putative partner of OsRac5 from Oryza sativa L.	Mol. Biol. Rep.	41(3)	1829-36	2014	_,RAC5	OsMY1,Osrac5, OsRac5, RACD, OsRacD, OsRACD
37887	24525904	Lee C., Teng Q., Zhong R., Yuan Y., Ye Z.H.	Functional roles of rice glycosyltransferase family GT43 in xylan biosynthesis.	Plant Signal Behav	9(1)	e27809	2014	_,_,IRX9,IRX14,GT43I,_,_,_,_,_	OsIRX9L, OsGT43F/OsIRX9L, OsGT43F,OsGT43E,OsIRX9, OsGT43C/OsIRX9, OsGT43C,OsIRX14, OsGT43J, GT43J, OsGT43J/OsIRX14,OsGT43I, OsGT43B, GT43B,OsGT43G, GT43G, OsIRX9L, IRX9L,OsGT43D,OsGT43B,OsGT43H,OsGT43A, GT43A
37888	24528386	Xia J., Yamaji N., Che J., Shen R.F., Ma J.F.	Normal root elongation requires arginine produced by argininosuccinate lyase in rice.	Plant J.	78(2)	215-26	2014	ASL1	OsASL1, OsASL1.1, OsASL1.2, OsAL1, red1
37889	24661284	Mustafiz A., Ghosh A., Tripathi A.K., Kaur C., Ganguly A.K., Bhavesh N.S., Tripathi J.K., Pareek A., Sopory S.K., Singla-Pareek SL.	A unique Ni(2+) -dependent and methylglyoxal-inducible rice glyoxalase I possesses a single active site and functions in abiotic stress response.	Plant J.	78(6)	951-63	2014	GLYI-11	OsGLYI11, GLYI11, OsGLYII1.1, OsGLYI11.2, OsGLYI11.3, OsGLYI-11.2, Glb33
37890	24450597	Wan L., Wang X., Li S., Hu J., Huang W., Zhu Y.	Overexpression of OsKTN80a, a katanin P80 ortholog, caused the repressed cell elongation and stalled cell division mediated by microtubule apparatus defects in primary root in Oryza sativa.	J Integr Plant Biol			2014	_,_,_,_	OsWD40-26, OsKTN80c,  OsDWD8, DWD8,OsWD40-179, OsKTN80a,  OsDWD9, DWD9,OsKTN80b,OsKTN60
37891	24399239	Chen X., Wang Y., Lv B., Li J., Luo L., Lu S., Zhang X., Ma H., Ming F.	The NAC Family Transcription Factor OsNAP Confers Abiotic Stress Response Through the ABA Pathway.	Plant Cell Physiol.	55(3)	604-19	2014	PP2C1,PP2C9,PP2C6,2R_MYB36 ,ERF91,ERF3,NAC58,DREB1A,SALT	OsPP2C1, OsSIPP2C1, SIPP2C1, OsPP2C68, PP2C68, OsPP108,OsPP15, PP15, OsPP2C09, PP2C09, OsPP2C9, OsPP2C3,OsPP2C06/OsABI2, OsPP2C06, OsPP2C6, OsABI2, OsPP10, ABI2, OsABIL1, ABIL1,OsMYB2, MYB2, Os2R_MYB36 ,OsERF#091, OsERF091, OsERF91, AP59, OsAP59, AP2/EREBP#147, AP2/EREBP147, OsBIERF3, BIERF3,AP37, OsAP37, OsERF3, OsERF#075, OsERF075, OsERF75, ERF75, AP2/EREBP#004, AP2/EREBP4, OsBIERF2, BIERF2, DLN23, OsDLN23,OsNAP, NAP, ONAC058, ONAC58, Os PS1, PS1, OsCTb1, CTb1,OsDREB1A, Os DREB1A, CBF3, OsCBF3, OsDREB1A/OsCBF3, ERF24, OsERF24, OsERF024, OsERF#024, AP2/EREBP#114, AP2/EREBP114, OsDREBL,salT*(sal1), SalT1*, sal1, Sal1, SALT, ML, SalT, OsSalT, OsJRL, JRL, Osl43, OsL43, OsMBL1, MBL1, OsJRL01, JRL01, OsJRL1, JRL1
37892	24596329	Liu H., Guo S., Xu Y., Li C., Zhang Z., Zhang D., Xu S., Zhang C., Chong K.	OsmiR396d-regulated OsGRFs Function in Floral Organogenesis in Rice through Binding to their Targets OsJMJ706 and OsCR4.	Plant Physiol.	165(1)	160-74	2014	GIF2,GRF6,JMJ706,GRF10,MADS47,MIS2,GIF1,GIF3,DH1,MIR396D	OsGIF2,OsGRF6,OsJMJ706,OsGRF10,OsMADS47, OsMDP1, MDP, MDP1,OsCR4, CR4, OsMIS2,OsGIF1,OsGIF3, OsGIF1, GIF1, MKB3,OsDH1, OsLBD2-1, LBD2-1, OsLOB16, LOB16,miR396d, osa-miR396d, osa-MIR396d
37893	24532604	Kuijt S.J., Greco R., Agalou A., Shao J., 't Hoen CC., Overn?s E., Osnato M., Curiale S., Meynard D., van Gulik R., Maraschin Sde F., Atallah M., de Kam RJ., Lamers G.E., Guiderdoni E., Rossini L., Meijer A.H., Ouwerkerk P.B.	Interaction between the GROWTH-REGULATING FACTOR and KNOTTED1-LIKE HOMEOBOX Families of Transcription Factors[W].	Plant Physiol.	164(4)	1952-66	2014	GRF3,GRF10,OSH1,OSH15,GRF5,GS2,OSKN2	OsGRF3,OsGRF10,OSKN1, Oskn1, OsKN1, OSH1/Oskn1, HB75,OSH15, OsH15, OSKN3, Oskn3, HOS3, D6, d6, OSH15/Oskn3, HB253, H15, OsKNOX3, KNOX3,OsGRF5,OsGRF4, GRF4, GS2/OsGRF4, PT2, GLW2, GS2/GL2, LGS1, OsLGS1,OsKn2, OsH71, HOS9, OSH71, OSH71/Oskn2
37894	0	Imam J.a b, Alam S.a, Mandal N.P.a, Variar M.a, Shukla P.b	Molecular screening for identification of blast resistance genes in North East and Eastern Indian rice germplasm (Oryza sativa L.) with PCR based makers	Euphytica	196	199-211	2014	PIKP,PIB,PIKH,PI9,PITA,PIZ,PIK,PIZT	Pik-p, Pi-kp, Pikp, Pikp-1, Pikp-2,Pi b(Pi s), Pis, Pib, Pi-s, Pi-hy,Pi-kh, Pi k-h, Pi54, Pi54rh, Pi-k(h), Pik-h, Pikh,Pi9(t), Pi9(t)*, Pi9, Pi-9(t),Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30, Trx30,Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2,Pik, RMg8, Pi-k, Pik-2, Pik-1, Pik1, Pik2, Pik-H4, Pikp-1, Pikh-1, Pik1-H4, Pikh-2, Pik2-H4,Piz-t, Pi-zt, Pi-z(t), Pi2/Pizt, Pizt, Pi9, OsPiz-t
37895	0	Zhang S.a, Zheng J.b c, Liu B.a, Peng S.b d, Leung H.b, Zhao J.a, Wang X.a, Yang T.a, Huang Z.a	Identification of QTLs for cold tolerance at seedling stage in rice (Oryza sativa L.) using two distinct methods of cold treatment	Euphytica	195	95-104	2014		
37896	24361205	Jiang G.a b, Zeng J.a, He Y.a	Analysis of quantitative trait loci affecting chlorophyll content of rice leaves in a double haploid population and two backcross populations	Gene	536	287-295	2014		
37897	24315823	Mondal T.K., Ganie S.A.	Identification and characterization of salt responsive miRNA-SSR markers in rice (oryza sativa)	Gene	535	204-209	2014	MIR167B,MIR171I,MIR167A,MIR1866,MIR166D,MIR169N,MIR156G,MIR408,MIR396A,MIR167F,MIR172B,miR159B,MIR171	miR167b, osa-miR167b,miR171i, osa-miR171iosa-miR171i-3p osa-miR171i-5p,miR167a, osa-miR167aosa-miR167a-3p osa-miR167a-5p, OsmiR167a,miR1866, osa-miR1866, osa-MIR1866, Osa-miR1866-5p, Osa-miR1866-3p,miR166d, osa-miR166dosa-miR166d-3p osa-miR166d-5p,miR169n, osa-miR169n, osa-MIR169n,miR156g, OsmiR156g, osmiR156g, osa-miR156g, osa-MIR156gosa-miR156g-3p osa-miR156g-5p,miR408, osa-MIR408osa-miR408 osa-miR408-3p osa-miR408-5p, OsMIR408 ,miR396a, osa-miR396a, osa-MIR396aosa-miR396a-3p osa-miR396a-5p, OsmiR396a,miR167f, osa-miR167f, osa-miRNA167f ,OsmiR172b, miR172b, osa-MIR172b, Osa-miR172b ,OsmiR159b, osa-MIR159b,miR171, osa-miR171, miR171a, osa-miR171a, osa-MIR171a
37900	0	Ali M.P.a, Chowdhury T.R.b	Tagging and mapping of genes and QTLs of Nilaparvata lugens resistance in rice	Euphytica	195	1-30	2014		
37901	0	Wang J.a, Wei L.b, Zheng T.c, Zhao X.c, Ali J.d, Xu J.c, Li Z.c	Simple sequence repeat markers reveal multiple loci governing grain-size variations in a japonica rice (Oryza sativa L.) mutant induced by cosmic radiation during space flight	Euphytica	196	225-236	2014		
37904	24395781	Hayafune M.a, Berisio R.b, Marchetti R.c, Silipo A.c, Kayama M.a, Desaki Y.a, Arima S.a, Squeglia F.b, Ruggiero A.b, Tokuyasu K.d, Molinaro A.c, Kaku H.a, Shibuya N.a	Chitin-induced activation of immune signaling by the rice receptor CEBiP relies on a unique sandwich-type dimerization	Proc. Natl. Acad. Sci. U.S.A.	111	E404-E413	2014	CEBIP,CERK1	CEBiP, Os-LYP1, LYP1, OsCEBiP,OsCERK1, OsLysM-RLK9, Os-CERK1, Os-LysM-RLK9, OsLysMRLK9, OsCERK1/OsLYK9, OsLYK9, LYK9
37906	0	Serrat X.a b, Cardona M.a, Gil J.a, Brito A.M.a, Moysset L.b, Nogu?s S.b, Lalanne E.a	A Mediterranean japonica rice (Oryza sativa) cultivar improvement through anther culture	Euphytica	195	31-44	2014		
37907	0	Wan B.a, Zha Z.a, Li J.a, Xia M.a, Du X.a, Lin Y.b, Yin D.a	Development of elite rice restorer lines in the genetic background of R022 possessing tolerance to brown planthopper, stem borer, leaf folder and herbicide through marker-assisted breeding	Euphytica	195	129-142	2014	BPH15,BPH14	RLCK134, OsRLCK134, OsLecRK1, LecRK1, SDRLK-LecRK1, OsSDRLK-LecRK1, OslecRK, lecRK, Bph15, OsBph15, Bph15 (Qbp2), Qbp2, qBPH-4,Bph14 (Qbp1), Bph14, Qbp1, qBPH-3
37908	0	Ying Y.a, Zhu H.b, Ye G.c, Zhang G.b, Li L.d, Liu G.b c	Detection of QTL on panicle number in rice (Oryza sativa L.) under different densities with single segment substitution lines	Euphytica	195	355-368	2014		
37909	24406632	Adachi M.a, Hasegawa T.b, Fukayama H.c, Tokida T.d, Sakai H.b, Matsunami T.e, Nakamura H.f, Sameshima R.g i, Okada M.h	Soil and water warming accelerates phenology and down-regulation of leaf photosynthesis of rice plants grown under free-air CO2 enrichment (FACE)	Plant and Cell Physiology	55	370-380	2014		
37910	24554078	Wei L.a b, Gu L.a, Song X.a, Cui X.a b, Lu Z.a, Zhou M.a, Wang L.a, Hu F.c, Zhai J.d e, Meyers B.C.d e, Cao X.a	Dicer-like 3 produces transposable element-associated 24-nt siRNAs that control agricultural traits in rice	Proc. Natl. Acad. Sci. U.S.A.	111	3877-3882	2014	CPS4,RDR2,BRD1,ASMT11,CYP76M7,DCL3A,MIR820A,MIR820B,MIR820C,GW6,CYP99A3,EUI1,AGO4A,AGO4B,KS7,DRM2	OsCPS4, CYC1, OsCYC1, OsCyc1, cpsl3, OsCPSL3, OsCPSsyn, OsCyc1/OsCPS4, OsTPS15, Os-CPS4, TPS11, OsTPS11,OsRDR2,brd1, OsDWARF, DWARF, OsBR6ox, BR6ox, CYP85A1, CYP85A4, OsDWF, CYP85A1/OsDWARF, OsBRD1, OsCYP85A1,OsASMT11, OsCOMT17, COMT17,OsCYP76M7, CYP76M10, OsCYP76M10, OsCYP76-4, CYP76-4,OsDCL3a,miR820a, osa-miR820a, osa-MIR820a, OsmiR820a,miR820b, osa-miR820b, osa-MIR820b, OsmiR820b,miR820c, osa-miR820c, osa-MIR820c, OsmiR820c,OsGSR1, GSR1, OsGASR7, GASR7, OsGW6, OsGASR7/GW6,OsCYP99A3,eui1, GA16,17ox, CYP714D1, EUI, CYP714D1/EUI, OsEUI, LG5, OsLG5,OsAGO4a, AGO4-2,OsAGO4b, AGO4-1 ,OsKS7, KS7, KSL7, OsKSL7, DTC1, OsDTC1, OsKS3, OsDTC1/OsKS7, OsTPS6, TPS6, TPS38, OsTPS38,OsDRM2, osdrm2, DRM2-1
37911	24443497	Chen C.P.a c d, Sakai H.a, Tokida T.b, Usui Y.a, Nakamura H.b, Hasegawa T.a	Do the rich always become richer? Characterizing the leaf physiological response of the high-yielding rice cultivar takanari to free-air CO2 enrichment	Plant and Cell Physiology	55	381-391	2014		
37912	24488961	Tian D.a, Wang J.a, Zeng X.a, Gu K.a, Qiu C.a, Yang X.a, Zhou Z.a, Goh M.a, Luo Y.a, Murata-Hori M.a, White F.F.c, Yin Z.a b	The Rice TAL effector-dependent resistance protein Xa10 triggers cell death and calcium depletion in the endoplasmic reticulum	Plant Cell	26	497-515	2014	XA10	Xa10, Xa-10
37913	24092883	Kaneko K, Inomata T, Masui T, Koshu T, Umezawa Y, Itoh K, Pozueta-Romero J, Mitsui T	Nucleotide pyrophosphatase/phosphodiesterase 1 exerts a negative effect on starch accumulation and growth in rice seedlings under high temperature and CO2 concentration conditions	Plant and Cell Physiology	55	320-332	2014	PAP1B,PAP1A,PAP1C,PAP1D,PAP27A,NPP1	OsPAP1b, NPP2, OsNPP2,OsPAP1a, NPP3, OsNPP3,OsPAP1c, NPP4, OsNPP4,OsPAP1d, NPP5, OsNPP5,OsPAP27a, NPP6, OsNPP6,OsNPP1, OsPAP27b, PAP27B
37914	24488962	Ren Y.a b, Wang Y.a, Liu F.a, Zhou K.a, Ding Y.c, Zhou F.a, Wang Y.b, Liu K.a, Gan L.b, Ma W.b, Han X.a, Zhang X.b, Guo X.b, Wu F.b, Cheng Z.b, Wang J.b, Lei C.b, Lin Q.b, Jiang L.a, Wu C.b, Bao Y.d, Wang H.b, Wan J.a b	glutelin precursor ACCUMULATION3 encodes a regulator of post-golgi vesicular traffic essential for vacuolar protein sorting in rice endosperm	Plant Cell	26	410-425	2014	GPA3,GLUP4,GLUP6	OsGPA3,glup4(esp8), esp8, glup4, OsRab5B2, Rab5a, OsRab5a, GPA1/Rab5a, GPA, GLUP4/Rab5, GLUP4/Rab5a, GPA1, OsGPA1,glup6(t), Glup6(t), Glup6, OsVPS9A, VPS9a, GPA2/VPS9a, GPA2, GLUP6/GEF
37915	0	Bian J.a, Li C.a, He H.a, Shi H.a, Yan S.b	Identification and analysis of QTLs for grain quality traits in rice using an introgression lines population	Euphytica	195	83-93	2014		
37917	24464483	Cardoso C.a, Zhang Y.a, Jamil M.a j, Hepworth J.b, Charnikhova T.a k, Dimkpa S.O.N.c, Meharg C.d, Wright M.H.e, Liu J.a l, Meng X.f, Wang Y.f, Li J.f, McCouch S.R.e, Leyser O.b g, Price A.H.c, Bouwmeester H.J.a h, Ruyter-Spira C.a i	Natural variation of rice strigolactone biosynthesis is associated with the deletion of two MAX1 orthologs	Proc. Natl. Acad. Sci. U.S.A.	111	2379-2384	2014	SLB1,SLB2	OsSLB1, Os900/CYP711A2, Os900, CYP711A2, OsCYP711A2, OsCO, CO,CYP711A1, OsCYP711A1, Os1400/CYP711A3, Os1400, CYP711A3, OsCYP711A3, OsMAX1-1400, MAX1-1400
37918	0	Chung P., Hsiao H.H., Chen H.J., Chang C.W., Wang S.J.	Influence of temperature on the expression of the rice sucrose transporter 4 gene, OsSUT4, in germinating embryos and maturing pollen	Acta Physiologiae Plantarum	36	217-229	2014	SUT4	OsSUT4(t), OsSUT4
37919	0	Wang L.a, Ma F.a, Xu S.b, Zheng T.c, Wang R.b, Chen H.d e, Shen W.a	Cloning and characterization of a Heme oxygenase-2 gene from rice (Oryza sativa L.), and its expression analysis in response to some abiotic stresses	Acta Physiologiae Plantarum	36	893-902	2014	YLC2	OsHO2, HO2, OsHO-2, HO-2
37920	24330191	Toriba T.a b, Hirano H.Y.a	The DROOPING LEAF and OsETTIN2 genes promote awn development in rice	Plant Journal	77	616-626	2014	ARF3,ETT1,ARF14,SHL2,ETT2,DL	OsARF3, ETT3, Os ETT3, OsETT3, DLN20, OsDLN20, ARF4, OsARF3lb, ARF3lb,OsARF15, ARF15, OsETT1, ARF3b, OsARF3b, OsARF3-1, ARF3-1, OsARF3, ARF3, DLN154, OsDLN154,OsARF14, OsETT4, ETT4, DLN153, OsDLN153, OsARF3la, ARF3la,shl2, SHL2, sh2, OsRDR6, RDR6,OsARF2, ARF2, OsETT2, ARF3a, OsARF3a, DLN16, OsDLN16, ARF3,OsDL, dl(lop), lop, dl, dl1, OsDRPq3, DRPq3
37921	24388520	Christoff A.P.a, Turchetto-Zolet A.C.a, Margis R.a b	Uncovering legumain genes in rice	Plant Science	215-216	100-109	2014	GLUP3,REP2,VPE2,VPE4,WRKY86	glup3(esp7), esp7, glup3, OsVPE1, VPE1, OsaLeg3,OsVPE3, VPE3, OsREP-2, REP-2alpha, REP-2beta, OsaLeg2, aLeg2,OsVPE2, OsaLeg1, OsLeg1, Leg1,OsVPE4, OsaLeg4, Leg4,OsWRKY86, OsaLeg5, Leg5
37922	24467907	Matsuno K., Fujimura T.	Induction of phytic acid synthesis by abscisic acid in suspension-cultured cells of rice	Plant Science	217-218	152-157	2014	ITPK1,_,ITPK6,ITPK3,ITPK4,MRP13,_,_,INO1,LPA1	OsITPK1, OsITP5/6K-1, ITP5/6K-1, OsITL2,OsIPK2, IPK2, IP6K,OsITPK6, OsITP5/6K-6, ITP5/6K-6,OsITPK3, OsITP5/6K-3, ITP5/6K-3, OsIPK1,OsITPK4, OsITP5/6K-4, ITP5/6K-4,OsABCC13, OsMRP13, OsMRP5,OsMIK, LPA,OsIPK1, IPK1,OsINO1, MIPS, IPS, RINO1, OsINO1-1, OsRINO1, OsMIPS1, MIPS1,Lpa1, OsLpa1, OsLpa1.1, OsLpa1.2, OsLpa1.3, Oslpa1, OsLpa1-3.1, OsLpa1-3.2, OsLpa1-3.3
37923	24372518	Lin X.a b, Wu F.a, Du X.a, Shi X.a, Liu Y.a, Liu S.a, Hu Y.a, Theisen G.c, Meng Z.a	The pleiotropic SEPALLATA-like gene OsMADS34 reveals that the 'empty glumes' of rice (Oryza sativa) spikelets are in fact rudimentary lemmas	New Phytologist	202	689-702	2014	PAP2	MADS34, OsMADS34, RMADS212/RMADS217/RMADS221, OsPAP2/MADS34, MADS34/PAP2, PAP2/OsMADS34, OsMADS34/PAP2, OsMADS19
37924	24491113	Zhang L.a, Hu B.b c, Li W.a, Che R.b c, Deng K.a, Li H.b c, Yu F.a, Ling H.d, Li Y.a, Chu C.b c	OsPT2, a phosphate transporter, is involved in the active uptake of selenite in rice	New Phytologist	201	1183-1191	2014	PT8,PT6,PT2,PT1,PT4,LTN1	OsPT8, PHT1-8, OsPht1;8, Pht1;8, PHT1;8, OsPHT1;8,OsPT6, PHT1-6, OsPht1;6, OsLPT6:1, OsLPT1, OsPT6:1, Pht1;6, LPT6:1, LPT1, PT6:1,OsPT2, PTH1-2, OsPht1;2, PHT1;2, OsPHT1;2,OsPT1, PHT1-1, OsPht1;1, Pht1;1, OsPHT1;1, PHT1;1,OsPT4, PHT1-4, OsPht1;4, PHT1-2, PHT1;4, OsPHT1;4,LTN1, OsPHO2, PHO2.1, PHO2.2, PHO2, OsUBC35, UBC35
37925	0	Hu T.a b, Yang Y.a, Tan L.a, Yang J.b, Wu Y.b	Molecular characteristics, recombinant expression and activity detection of OsGSTL1 from rice	Brazilian Archives of Biology and Technology	57	70-76	2014	GSTL1	OsGSTL1, GST1
37926	24105034	Liu T.a, Kim D.W.a, Niitsu M.b, Berberich T.c, Kusano T.a	Oryza sativa polyamine oxidase 1 back-converts tetraamines, spermine and thermospermine, to spermidine	Plant Cell Rep.	33	143-151	2014	PAO1,PAO4,PAO3,PAO5,PAOB,PAO7,PAOA	OsPAO1, OsAO4, AO4,OsPAO4, OsAO1, AO1,OsPAO3, OsAO3, AO3,OsPAO5, OsAO2, AO2,PAOb, OsPAOb, OsPAO6, OsPAO2, PAO6, PAO2,OsPAO7, OsPAO3, PAO3,PAOa, OsPAO2, PAO2, OsPAOa
37927	0	Rodr?guez-Valent?n R.a b, Campos F.a, Battaglia M.a, Sol?rzano R.M.a, Rosales M.A.a c, Covarrubias A.A.a	Group 6 Late Embryogenesis Abundant (LEA) Proteins in Monocotyledonous Plants: Genomic Organization and Transcript Accumulation Patterns in Response to Stress in Oryza sativa	Plant Molecular Biology Reporter	32	198-208	2014	_,_	GSC 381, OsLEA6,OsHsp90, HSP90
37929	24385091	Xu Y.a, Wang Y.a, Long Q.a, Huang J.a, Wang Y.a, Zhou K.a, Zheng M.a, Sun J.a, Chen H.a, Chen S.a, Jiang L.a, Wang C.a, Wan J.a b	Overexpression of OsZHD1, a zinc finger homeodomain class homeobox transcription factor, induces abaxially curled and drooping leaf in rice	Planta	239	803-816	2014	_,_,_,_,_,_,ZHD9,ZHD2,ZHD3,ACL-D,ZHD5	OsZHD4,OsZHD6,OsZHD7,OsZHD8,OsZHD11,OsZHD10,OsZHD9, ZHD_G15, OsZHD_G15,OsZHD2,OsZHD3,OsZHD1, ZHD1, OsACL-D, ZHD_G6, OsZHD_G6,OsZHD5
37930	0	Zhou C., Chen R.J., Gao X.L., Li L.H., Xu Z.J.	Heterologous expression of a rice RNA-recognition motif gene OsCBP20 in escherichia coli confers abiotic stress tolerance	Plant OMICS	7	28-34	2014	DU3	du3, OsCBP20, OsCBP20/du3, CBP20
37931	23621683	Toyomasu T.a, Usui M.a, Sugawara C.a, Otomo K.a, Hirose Y.a, Miyao A.b, Hirochika H.b, Okada K.c, Shimizu T.c j, Koga J.d, Hasegawa M.e, Chuba M.f, Kawana Y.g, Kuroda M.h, Minami E.i, Mitsuhashi W.a, Yamane H.c k	Reverse-genetic approach to verify physiological roles of rice phytoalexins: Characterization of a knockdown mutant of OsCPS4 phytoalexin biosynthetic gene in rice	Physiol Plant	150	55-62	2014	CPS4,KS4	OsCPS4, CYC1, OsCYC1, OsCyc1, cpsl3, OsCPSL3, OsCPSsyn, OsCyc1/OsCPS4, OsTPS15, Os-CPS4, TPS11, OsTPS11,OsKS4, KS4, KSL4, OsKSL4, DTS2, OsDTS2, OsTPS16, TPS16, TPS8, OsTPS8
37932	24033451	Svyatyna K.a, Jikumaru Y.b, Brendel R.a, Reichelt M.c, Mith?fer A.d, Takano M.e, Kamiya Y.b, Nick P.a, Riemann M.a	Light induces jasmonate-isoleucine conjugation via OsJAR1-dependent and -independent pathways in rice	Plant, Cell and Environment	37	827-839	2014		
37933	24441161	Bao Z.a, Watanabe A.a, Sasaki K.a, Okubo T.a, Tokida T.b, Liu D.c, Ikeda S.a d, Imaizumi-Anraku H.e, Asakawa S.c, Sato T.a, Mitsui H.a, Minamisawa K.a	A rice gene for microbial symbiosis, Oryza sativa CCaMK, reduces CH4 flux in a paddy field with low nitrogen input	Appl. Environ. Microbiol.	80	1995-2003	2014	DMI3	OsDMI3, OsCCaMK1, OsCCaMK, OsCCAMK, CCAMK
37936	23723154	Liu F., Ren Y., Wang Y., Peng C., Zhou K., Lv J., Guo X., Zhang X., Zhong M., Zhao S., Jiang L., Wang H., Bao Y., Wan J.	OsVPS9A functions cooperatively with OsRAB5A to regulate post-Golgi dense vesicle-mediated storage protein trafficking to the protein storage vacuole in rice endosperm cells.	Mol Plant	6(6)	1918-32	2013	GLUP4,GLUP6	glup4(esp8), esp8, glup4, OsRab5B2, Rab5a, OsRab5a, GPA1/Rab5a, GPA, GLUP4/Rab5, GLUP4/Rab5a, GPA1, OsGPA1,glup6(t), Glup6(t), Glup6, OsVPS9A, VPS9a, GPA2/VPS9a, GPA2, GLUP6/GEF
37937	20202174	Yong-Fang Li, Zheng Y., Charles Addo-Quaye, Zhang L., Saini A., Jagadeeswaran G., Michael J Axtell, Zhang W., Sunkar R.	Transcriptome-wide identification of microRNA targets in rice.	Plant J.	62(5)	742-59	2010	GRF6,GRF10,MIR396D	OsGRF6,OsGRF10,miR396d, osa-miR396d, osa-MIR396d
37938	24203183	M Iwahashi, M Nakazono, A Kanno, K Sugino, T Ishibashi, A Hirai	Genetic and physical maps and a clone bank of mitochondrial DNA from rice.	Theor. Appl. Genet.	84(3-4)	275-9	1992	_,RPS12,_,NAD3,26S  rRNA,_,18S  rRNA,_,_,_	cox2, coxII,rps12,atpA, atpA.p,nad3,rrn26,atp6, N-atp6, B-ATP6, B-atp6, atp6-1,rrn18,atp9, RMtATP9, aatp9,cob, cob-1, cob-like, cyt c,coxI, COX1, cox1-1, cox1
37939	12609030	Nakashita H., Yasuda M., Nitta T., Asami T., Fujioka S., Arai Y., Sekimata K., Takatsuto S., Yamaguchi I., Yoshida S.	Brassinosteroid functions in a broad range of disease resistance in tobacco and rice.	Plant J.	33(5)	887-98	2003	PR10A	PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 
37940	24231976	T Kumamaru, H Satoh, N Iwata, T Omura, M Ogawa, K Tanaka	Mutants for rice storage proteins : 1. Screening of mutants for rice storage proteins of protein bodies in the starchy endosperm.	Theor. Appl. Genet.	76(1)	11-6	1988	ESP4,ESP1,ESP3,ESP2	Esp4, 10/16-H,esp1(rsp1), rsp1, esp1, OsESP1, ESP1/eRF1, eRF1, OseRF1,esp3(rsp3), rsp3, esp3,esp2(rsp2), rsp2, esp2, PDIL1-1
37941	21689369	Kovalchuk N., Wu W., Eini O., Bazanova N., Pallotta M., Shirley N., Singh R., Ismagul A., Eliby S., Johnson A., Langridge P., Lopato S.	The scutellar vascular bundle-specific promoter of the wheat HD-Zip IV transcription factor shows similar spatial and temporal activity in transgenic wheat, barley and rice.	Plant Biotechnol. J.	10(1)	43-53	2012		
37942	21498073	Park J.Y., Ike M., Arakane M., Shiroma R., Li Y., Arai-Sanoh Y., Kondo M., Tokuyasu K.	DiSC (direct saccharification of culms) process for bioethanol production from rice straw.	Bioresour. Technol.	102(11)	6502-7	2011		
37943	21140152	Okuzaki A., Konagaya K., Nanasato Y., Tsuda M., Tabei Y.	Estrogen-inducible GFP expression patterns in rice (Oryza sativa L.).	Plant Cell Rep.	30(4)	529-38	2011		
37944	21267709	Chen X., Hedley P.E., Morris J., Liu H., Niks R.E., Waugh R.	Combining genetical genomics and bulked segregant analysis-based differential expression: an approach to gene localization.	Theor. Appl. Genet.	122(7)	1375-83	2011		
37945	21694767	Filichkin S.A., Breton G., Priest H.D., Dharmawardhana P., Jaiswal P., Fox S.E., Michael T.P., Chory J., Kay S.A., Mockler T.C.	Global profiling of rice and poplar transcriptomes highlights key conserved circadian-controlled pathways and cis-regulatory modules.	PLoS ONE	6(6)	e16907	2011		
37946	21635781	Nunes C.C., Gowda M., Sailsbery J., Xue M., Chen F., Brown D.E., Oh Y., Mitchell T.K., Dean R.A.	Diverse and tissue-enriched small RNAs in the plant pathogenic fungus, Magnaporthe oryzae.	BMC Genomics	12	288	2011		
37948	21323774	Sakai H., Ikawa H., Tanaka T., Numa H., Minami H., Fujisawa M., Shibata M., Kurita K., Kikuta A., Hamada M., Kanamori H., Namiki N., Wu J., Itoh T., Matsumoto T., Sasaki T.	Distinct evolutionary patterns of Oryza glaberrima deciphered by genome sequencing and comparative analysis	Plant Journal	66	796-805	2011		
37949	22319137	Yang C.C., Kawahara Y., Mizuno H., Wu J., Matsumoto T., Itoh T.	Independent Domestication of Asian Rice Followed by Gene Flow from japonica to indica.	Mol. Biol. Evol.	29(5)	1471-9	2012		
37952	21465186	Bushman B.S., Larson S.R., Tuna M., West M.S., Hernandez A.G., Vullaganti D., Gong G., Robins J.G., Jensen K.B., Thimmapuram J.	Orchardgrass (Dactylis glomerata L.) EST and SSR marker development, annotation, and transferability	Theoretical and Applied Genetics	123	119-129	2011		
37953	21621873	Tsaftaris A., Pasentsis K., Makris A., Darzentas N., Polidoros A., Kalivas A., Argiriou A.	The study of the E-class SEPALLATA3-like MADS-box genes in wild-type and mutant flowers of cultivated saffron crocus (Crocus sativus L.) and its putative progenitors	J. Plant Physiol.	168	1675-1684	2011		
37954	21606319	Ficklin S.P., Feltus F.A.	Gene coexpression network alignment and conservation of gene modules between two grass species: Maize and rice	Plant Physiol.	156	1244-1256	2011		
37955	21216747	Nagamura Y., Antonio B.A., Sato Y., Miyao A., Namiki N., Yonemaru J.I., Minami H., Kamatsuki K., Shimura K., Shimizu Y., Hirochika H.	Rice TOGO browser: A platform to retrieve integrated information on rice functional and applied genomics	Plant and Cell Physiology	52	230-237	2011		
37958	21665325	Kou H.P., Li Y., Song X.X., Ou X.F., Xing S.C., Ma J., von Wettstein D., Liu B.	Heritable alteration in DNA methylation induced by nitrogen-deficiency stress accompanies enhanced tolerance by progenies to the stress in rice (Oryza sativa L.)	J. Plant Physiol.	168	1685-1693	2011		
37959	0	Iftekharuddaula K.M., Newaz M.A., Salam M.A., Ahmed H.U., Mahbub M.A.A., Septiningsih E.M., Collard B.C.Y., Sanchez D.L., Pamplona A.M., Mackill D.J.	Rapid and high-precision marker assisted backcrossing to introgress the Sub1 QTL into BR11, the rainfed lowland rice mega variety of Bangladesh	Euphytica	178	83-97	2011		
37960	0	Kim S.I., Tai T.H.	Evaluation of seedling cold tolerance in rice cultivars: A comparison of visual ratings and quantitative indicators of physiological changes	Euphytica	178	437-447	2011		
37961	0	Srinivasachary, Willocquet L., Savary S.	Resistance to rice sheath blight (Rhizoctonia solani K[hn) [(teleomorph: Thanatephorus cucumeris (A.B. Frank) Donk.] disease: Current status and perspectives	Euphytica	178	1-22	2011		
37962	0	Zhang X., Zhang G., Guo L., Wang H., Zeng D., Dong G., Qian Q., Xue D.	Identification of quantitative trait loci for Cd and Zn concentrations of brown rice grown in Cd-polluted soils	Euphytica	180	173-179	2011		
37963	21353327	Zhou Q., Wang L., Cai X., Wang D., Hua X., Qu L., Lin J., Chen T.	Net sodium fluxes change significantly at anatomically distinct root zones of rice (Oryza sativa L.) seedlings	J. Plant Physiol.	168	1249-1255	2011		
37964	0	Ayliffe M., Jin Y., Kang Z., Persson M., Steffenson B., Wang S., Leung H.	Determining the basis of nonhost resistance in rice to cereal rusts	Euphytica	179	33-40	2011		
37965	21571672	Movahedi S., van De Peer Y., Vandepoele K.	Comparative network analysis reveals that tissue specificity and gene function are important factors influencing the mode of expression evolution in arabidopsis and rice	Plant Physiol.	156	1316-1330	2011		
37966	0	Xiao Y., Pan Y., Luo L., Zhang G., Deng H., Dai L., Liu X., Tang W., Chen L., Wang G.L.	Quantitative trait loci associated with seed set under high temperature stress at the flowering stage in rice (Oryza sativa L.)	Euphytica	178	331-338	2011		
37967	0	Fu D., Chen L., Yu G., Liu Y., Lou Q., Mei H., Xiong L., Li M., Xu X., Luo L.	QTL mapping of sheath blight resistance in a deep-water rice cultivar	Euphytica	180	209-218	2011		
37968	0	Kovi M.R., Bai X., Mao D., Xing Y.	Impact of seasonal changes on spikelets per panicle, panicle length and plant height in rice (Oryza sativa L.)	Euphytica	179	319-331	2011		
37969	20857082	Nelson J.C., Mcclung A.M., Fjellstrom R.G., Moldenhauer K.A.K., Boza E., Jodari F., Oard J.H., Linscombe S., Scheffler B.E., Yeater K.M.	Mapping QTL main and interaction influences on milling quality in elite US rice germplasm	Theoretical and Applied Genetics	122	291-309	2011		
37970	0	Wang Z., Wang J., Bao Y., Wu Y., Zhang H.	Quantitative trait loci controlling rice seed germination under salt stress	Euphytica	178	297-307	2011		
37971	24178570	Komiya R., Nonomura K.	Isolation and bioinformatic analyses of small RNAs interacting with germ cell-specific argonaute in rice.	Methods Mol. Biol.	1093	235-45	2014		
37972	24570855	Thilakarathne B.L., Rajagopalan U.M., Kadono H., Yonekura T.	An optical interferometric technique for assessing ozone induced damage and recovery under cumulative exposures for a Japanese rice cultivar.	Springerplus	3	89	2014		
37973	24586255	Okuno A., Hirano K., Asano K., Takase W., Masuda R., Morinaka Y., Ueguchi-Tanaka M., Kitano H., Matsuoka M.	New approach to increasing rice lodging resistance and biomass yield through the use of high gibberellin producing varieties.	PLoS ONE	9(2)	e86870	2014		
37974	24454308	Sasaya T., Nakazono-Nagaoka E., Saika H., Aoki H., Hiraguri A., Netsu O., Uehara-Ichiki T., Onuki M., Toki S., Saito K., Yatou O.	Transgenic strategies to confer resistance against viruses in rice plants.	Front Microbiol	4	409	2014		
37975	24635777	Komiya R., Ohyanagi H., Niihama M., Watanabe T., Nakano M., Kurata N., Nonomura K.I.	Rice germline-specific Argonaute MEL1 protein binds to phasiRNAs generated from more than 700 lincRNAs.	Plant J.	78(3)	385-97	2014	MEL1,MIR2118F,SHL2,SHO1	mel1, OsMEL1, MEAL1, OsMEAL1, OsAGO5c ,miR2118f, osa-miR2118f, osa-MIR2118f,shl2, SHL2, sh2, OsRDR6, RDR6,sho1, DCL4, OsDCL4, Os DCL4, Dcl4 
37976	24709155	Taniguchi S., Miyoshi S., Tamaoki D., Yamada S., Tanaka K., Uji Y., Tanaka S., Akimitsu K., Gomi K.	Isolation of jasmonate-induced sesquiterpene synthase of rice: Product of which has an antifungal activity against Magnaporthe oryzae.	J. Plant Physiol.	171(8)	625-32	2014		
37977	24569847	Sakata T., Oda S., Tsunaga Y., Shomura H., Kawagishi-Kobayashi M., Aya K., Saeki K., Endo T., Nagano K., Kojima M., Sakakibara H., Watanabe M., Matsuoka M., Higashitani A.	Reduction of gibberellin by low temperature disrupts pollen development in rice.	Plant Physiol.	164(4)	2011-9	2014		
37978	24649396	Abe T.K., Taniguchi M.	Identification of myo-inositol hexakisphosphate (IP6) as a beta-secretase 1 (BACE1) inhibitory molecule in rice grain extract and digest.	FEBS Open Bio	4	162-7	2014		
37979	24466017	Arai-Kichise Y., Shiwa Y., Ebana K., Shibata-Hatta M., Yoshikawa H., Yano M., Wakasa K.	Genome-wide DNA polymorphisms in seven rice cultivars of temperate and tropical japonica groups.	PLoS ONE	9(1)	e86312	2014		
37980	24406628	Tsutsumi K., Konno M., Miyazawa S., Miyao M.	Sites of action of elevated CO2 on leaf development in rice: discrimination between the effects of elevated CO2 and nitrogen deficiency.	Plant Cell Physiol.	55(2)	258-68	2014		
37981	24654769	Hanaoka H., Uraguchi S., Takano J., Tanaka M., Fujiwara T.	OsNIP3;1, a rice boric acid channel, regulates boron distribution and is essential for growth under boron-deficient conditions.	Plant J.	78(5)	890-902	2014		
37982	24535433	Yamauchi T., Johzuka-Hisatomi Y., Terada R., Nakamura I., Iida S.	The MET1b gene encoding a maintenance DNA methyltransferase is indispensable for normal development in rice.	Plant Mol. Biol.	85(3)	219-32	2014	MET1A,MET1B	OsMET1a, OsMET1-1, MET1a, MET1-1, OsMET1, OsDMT702, DMT702,OsMET1b, OsMET1-2, MET1b, MET1
37983	24243191	Mutou C., Tanaka K., Ishikawa R.	DNA extraction from rice endosperm (including a protocol for extraction of DNA from ancient seed samples).	Methods Mol. Biol.	1099	7-15	2014		
37984	24410502	Nakamura R., Nakamura R., Adachi R., Hachisuka A., Yamada A., Ozeki Y., Teshima R.	Differential analysis of protein expression in RNA-binding-protein transgenic and parental rice seeds cultivated under salt stress.	J. Proteome Res.	13(2)	489-95	2014	_,_	RA17, RAP, RAG1, OsEnS-97,RAG2, RA14B, RA14, OsEnS-98
37985	24506679	Kulichikhin K., Yamauchi T., Watanabe K., Nakazono M.	Biochemical and molecular characterization of rice (Oryza sativa?L.) roots forming a barrier to radial oxygen loss.	Plant Cell Environ.			2014		
37986	24591053	Adachi S., Baptista L.Z., Sueyoshi T., Murata K., Yamamoto T., Ebitani T., Ookawa T., Hirasawa T.	Introgression of two chromosome regions for leaf photosynthesis from an indica rice into the genetic background of a japonica rice.	J. Exp. Bot.	65(8)	2049-56	2014		
37987	24526015	Okamoto M., Higuchi-Takeuchi M., Shimizu M., Shinozaki K., Hanada K.	Substantial expression of novel small open reading frames in Oryza sativa.	Plant Signal Behav	9(1)	e27848	2014		
37988	24397549	Onda Y., Miyagi A., Takahara K., Uchimiya H., Kawai-Yamada M.	Effects of NAD kinase 2 overexpression on primary metabolite profiles in rice leaves under elevated carbon dioxide.	Plant Biol (Stuttg)	16(4)	819-24	2014	GLN1;1,GLT2	OsGLN1;1, GS1, RGS28, OsGS1;1, GS1;1, OsGS, GS1, OsGS1, GLN1-1, OsGS1-1, GS1-1, GS1.1, OsGS1.1,OsGLT2, OsNADH-GOGAT2, NADH-GOGAT2, OsGOGAT2, GOGAT2, OsGLU2, GLU2
37989	21258067	Arai-Kichise Y., Shiwa Y., Nagasaki H., Ebana K., Yoshikawa H., Yano M., Wakasa K.	Discovery of genome-wide DNA polymorphisms in a landrace cultivar of japonica rice by whole-genome sequencing	Plant and Cell Physiology	52	274-282	2011		
37990	21186176	Sakurai T., Kondou Y., Akiyama K., Kurotani A., Higuchi M., Ichikawa T., Kuroda H., Kusano M., Mori M., Saitou T., Sakakibara H., Sugano S., Suzuki M., Takahashi H., Takahashi S., Takatsuji H., Yokotani N., Yoshizumi T., Saito K., Shinozaki K., Oda K., Hirochika H., Matsui M.	RiceFOX: A database of arabidopsis mutant lines overexpressing rice full-length cDNA that contains a wide range of trait information to facilitate analysis of gene function	Plant and Cell Physiology	52	265-273	2011		
37991	0	Mathure S., Shaikh A., Renuka N., Wakte K., Jawali N., Thengane R., Nadaf A.	Characterisation of aromatic rice (Oryza sativa L.) germplasm and correlation between their agronomic and quality traits	Euphytica	179	237-246	2011		
37993	0	Li W., Xu L., Bai X., Xing Y.	Quantitative trait loci for seed dormancy in rice	Euphytica	178	427-435	2011		
37994	20878143	Wang L., Wang A., Huang X., Zhao Q., Dong G., Qian Q., Sang T., Han B.	Mapping 49 quantitative trait loci at high resolution through sequencing-based genotyping of rice recombinant inbred lines	Theoretical and Applied Genetics	122	327-340	2011		
37995	0	Kanbar A., Shashidhar H.E.	Participatory selection assisted by DNA markers for enhanced drought resistance and productivity in rice (Oryza sativa L.)	Euphytica	178	137-150	2011		
37996	0	Nakano T., Ito Y.	Molecular mechanisms controlling plant organ abscission	Plant Biotechnology	30	209-216	2013	SHAT1,SH4,SH1,QSH1	OsSHAT1, AP2/EREBP#043, AP2/EREBP43, AP2-5, DLN124, OsDLN124, ObSHAT1, OgSHAT1, OrSHAT1 ,sh4, SH4, SHAT2, SHA1, qSH4, QSH4, OsSh4, Sh4, Osh4, OsMSL23, MSL23,YAB2, OsYAB2, OsSh1, Sh1, OsFIL2, OsSH1, Osh1,qSH1, qsh1, qSH-1, RIL1, OsRIL1 
37997	0	Qin Y., Suk-Man Kim, Zhao X., Jia B., Hyunn-Suk Lee, Kyung-Min Kim, Moo-Young Eun, Il-Doo Jin, Jae-Keun Sohn	Identification for quantitative trait loci controlling grain shattering in rice	Genes Genomics	32	173-180	2010		
37998	24280096	Chen X.a, Fu S.a, Zhang P.a, Gu Z.a, Liu J.a, Qian Q.b, Ma B.a	Proteomic analysis of a disease-resistance-enhanced lesion mimic mutant spotted leaf 5 in rice	Rice (N Y)	6	1	2013	APX7,SPL5,CHT8,_,_,GSTF14,ASTOL1,AAT1,_,FDH,SAMS1,RCA,GAPC2	OsAPx7, OsAPx07, OSAPX7, APx7, sAPX,spl5(bl6,spl5-1), bl6, spl5, SF3b3,Cht8, OsChia2a, Cht2, Rcht2, Chia2a, CHIT14, OsCHIT14, OsPR3,TXNL4B, Dim2, DLP,ALT-2, OsGGAT, GGAT,OsGSTF14, GST14,RCS1, rcs1, OsOASTL-A2, OASTL-A2, OsASTOL1,AST, OsAAT1,Rubisco-L,OsFDH, FDH 1, FDH1, OsFDH1,OsSAMS1, OS-SAMS1, OsSAMS, SAM, SAMS,OsRcaII, rca, rcaII, OsRcaI, RCAI, ME137, OsRCA1, RCA, RCAalpha, OsRCAalpha, OsRCAbeta,GAPDH, OsGAPDH, OsGapC2
37999	11124253	C J Jiang, K Shoji, R Matsuki, A Baba, N Inagaki, H Ban, T Iwasaki, N Imamoto, Y Yoneda, X W Deng, N Yamamoto	Molecular cloning of a novel importin alpha homologue from rice, by which constitutive photomorphogenic 1 (COP1) nuclear localization signal (NLS)-protein is preferentially nuclear imported.	J. Biol. Chem.	276(12)	9322-9	2001	IMPA2,IMPA1B,IMPA1A	,OsIMPA1B, IMPalpha1B, OsIMPalpha1B, Imp3, OsImpalpha1b, Impalpha1b,rImpa1a, Impa1a, Osimpa1, Osimpalpha1, OsImpalpha1a, Impalpha1a
38000	12618411	C?dric Feschotte, Swamy L., Susan R Wessler	Genome-wide analysis of mariner-like transposable elements in rice reveals complex relationships with stowaway miniature inverted repeat transposable elements (MITEs).	Genetics	163(2)	747-58	2003	STOW-OS25,STOW-OS50,STOW-OS32,STOW-OS45,STOW-OS10,STOW-OS38,STOW-OS8,STOW-OS23,STOW-OS18,STOW-OS24,STOW-OS30,STOW-OS15,STOW-OS26,STOW-OS46,STOW-OS21,STOW-OS13,STOW-OS28,STOW-OS34,STOW-OS9,STOW-OS52,STOW-OS51,STOW-OS37,STOW-OS16,STOW-OS35,STOW-OS49,STOW-OS20,STOW-OS42,STOW-OS12,STOW-OS29,STOW-OS14,STOW-OS11,MAR1,MAR4,MAR7,MAR27I,MAR29I,MAR8A,MAR32I,MAR19,MAR11,MAR14A,MAR14B,MAR14C,MAR16,MAR5A,MAR2,MAR24,MAR24BI,MAR21,MAR28I,MAR17A,MAR13,MAR9A,MAR9B,MAR10A,MAR18I,STOW-OS3,STOW-OS5,STOW-OS6,STOW-OS1	Stow-Os25,Stow-Os50,Stow-Os32,Stow-Os45,Stow-Os10,Stow-Os38,Stow-Os8,Stow-Os23,Stow-Os18,Stow-Os24,Stow-Os30,Stow-Os15,Stow-Os26,Stow-Os46,Stow-Os21,Stow-Os13,Stow-Os28,Stow-Os34,Stow-Os9,Stow-Os52,Stow-Os51,Stow-Os37,Stow-Os16,Stow-Os35,Stow-Os49,Stow-Os20,Stow-Os42,Stow-Os12,Stow-Os29,Stow-Os14,Stow-Os11,Osmar1,Osmar4,Osmar7,Osmar27i,Osmar29i,Osmar8a,Osmar32i,Osmar19,Osmar11,Osmar14A,Osmar14B,Osmar14C,Osmar16,Osmar5A,Osmar2,Osmar24,Osmar24Bi,Osmar21,Osmar28i,Osmar17A,Osmar13,Osmar9A,Osmar9B,Osmar10A,Osmar18i,Stow-Os3,Stow-Os5,Stow-Os6,Stow-Os1
38001	9933584	S Kose, N Imamoto, T Tachibana, M Yoshida, Y Yoneda	beta-subunit of nuclear pore-targeting complex (importin-beta) can be exported from the nucleus in a Ran-independent manner.	J. Biol. Chem.	274(7)	3946-52	1999		
38002	12087189	Nagano H., Kunii M., Azuma T., KISHIMA Y., SANO Y.	Characterization of the repetitive sequences in a 200-kb region around the rice waxy locus: diversity of transposable elements and presence of veiled repetitive sequences.	Genes Genet. Syst.	77(2)	69-79	2002	MASHU,STOW-OS4,STOW-OS6,TABITOV,TABITOI,TABITOII,TABITOIII,TABITOIV,TABITOVI,KISERUI,KISERUII,KISERUIII,KISERUIV,AKAN,SAROMA,SHIKOTSU,TOYA,MOIWA,RISHIRI,SHARI,TAISETSU,TENGU,YOUTEI,TEINE,BASHO,ONAGAI,ONAGAII,MERMITE	Mashu,Stow-Os4,Stow-Os6,TabitoV,TabitoI,TabitoII,TabitoIII,TabitoIV,TabitoVI,KiseruI,KiseruII,KiseruIII,KiseruIV,Akan,Saroma,Shikotsu,Toya,Moiwa,Rishiri,Shari,Taisetsu,Tengu,Youtei,Teine,Basho,OnagaI,OnagaII,Mermite
38003	8061524	T E Bureau, S R Wessler	Stowaway: a new family of inverted repeat elements associated with the genes of both monocotyledonous and dicotyledonous plants.	Plant Cell	6(6)	907-16	1994	STOW-OS2,STOW-OS3,STOW-OS4,STOW-OS5,STOW-OS6,STOW-OS7,STOW-OS1	Stow-Os2,Stow-Os3,Stow-Os4,Stow-Os5,Stow-Os6,Stow-Os7,Stow-Os1
38004	20511295	Toriba T., Suzaki T., Yamaguchi T., Ohmori Y., Tsukaya H., Hiro-Yuki Hirano	Distinct regulation of adaxial-abaxial polarity in anther patterning in rice.	Plant Cell	22(5)	1452-62	2010	SHL2,HB4,ETT1,ARF3	shl2, SHL2, sh2, OsRDR6, RDR6,OSHB4, OsHox32, HOX32, OsHB4, Oshox32, PHB3, OsHDZ13, OsHDZIP13, HDZ13, HDZIP13,OsARF15, ARF15, OsETT1, ARF3b, OsARF3b, OsARF3-1, ARF3-1, OsARF3, ARF3, DLN154, OsDLN154,OsARF3, ETT3, Os ETT3, OsETT3, DLN20, OsDLN20, ARF4, OsARF3lb, ARF3lb
38005	18627494	Clarice de Azevedo Souza, Barbazuk B., Steven G Ralph, Bohlmann J., Hamberger B., Carl J Douglas	Genome-wide analysis of a land plant-specific acyl:coenzyme A synthetase (ACS) gene family in Arabidopsis, poplar, rice and Physcomitrella.	New Phytol.	179(4)	987-1003	2008	4CL1,_,_,_,_,_,ACS4,ACS6,4CL2,ACS1,ACS9,4CL4,4CL5,4CL3	Os4CL1, 4-CL, 4-CL. 1,OsACS3,OsACS8,OsACS2,OsACS7, ACS7,OsACS5, ACS5, 4ACS5, Os4ACS5,OsACS4, OsOPCL1, OPCL1,OsACS6, 4ACS6, Os4ACS6,Os4CL2,OsACS1,OsACS9, 4CL4, OsACOS12, ACOS12 ,Os4CL4,Os4CL5, 4CL3, Os4CL3,Os4CL3, Os4CL2, Os4CL, 4CL2, 4CL
38006	21335373	Patricia Fern?ndez-Calvo, Chini A., Gemma Fern?ndez-Barbero, Jos?-Manuel Chico, Selena Gimenez-Ibanez, Geerinck J., Eeckhout D., Schweizer F., Godoy M., Jos? Manuel Franco-Zorrilla, Pauwels L., Witters E., Mar?a Isabel Puga, Javier Paz-Ares, Goossens A., Reymond P., Geert De Jaeger, Solano R.	The Arabidopsis bHLH transcription factors MYC3 and MYC4 are targets of JAZ repressors and act additively with MYC2 in the activation of jasmonate responses.	Plant Cell	23(2)	701-15	2011		
38007	10635550	N Mitsukawa, R Konishi, M Uchiki, T Masumura, K Tanaka	Molecular cloning and characterization of a cysteine-rich 16.6-kDa prolamin in rice seeds.	Biosci. Biotechnol. Biochem.	63(11)	1851-8	1999	PRO16.2	Prol-17, OsEnS-88, pro16.2, OsPRO16.2, PROLM24
38008	0	Park S., Man-Ho Cho, Seong Hee Bhoo, Jong-Seong Jeon, Young-Kook Kwon, Tae-Ryong Hahn	Altered sucrose synthesis in rice plants with reduced activity of fructose-6-phosphate 2-kinase/fructose-2,6-bisphosphatase	Journal of Plant Biology	50(1)	38-43	2007	F2KP1,F2KP2	OsF2KP1,OsF2KP2
38009	10557228	Hirose N., Yamaya T.	Okadaic Acid Mimics Nitrogen-Stimulated Transcription of the NADH-glutamate synthase Gene in Rice Cell Cultures.	Plant Physiol.	121(3)	805-812	1999	GLT1	OsGLT1, OsNADH-GOGAT1, NADH-GOGAT1, OsNADH-GOGAT, GOGAT, NADH-GOGAT, OsGOGAT1, GOGAT1, OsGLU1
38010	14966247	Jia L., Michael T Clegg, Jiang T.	Evolutionary dynamics of the DNA-binding domains in putative R2R3-MYB genes identified from rice subspecies indica and japonica genomes.	Plant Physiol.	134(2)	575-85	2004	DLN231,_,_,ALYL1,_,_,_,DLN31,CSA,2R_MYB97,2R_MYB20,MYB20,MYB1,_,CSA2,GL1A,FLP,MYB10,MYB9,2R_MYB4 ,MYB44,2R_MYB45,SH11,_,MYB11,MYB3R2,_,MYB8,MYB19 ,MYB21,PL,GL1D,2R_MYB47,DLN254,2R_MYB72 ,MYB102,_,MPS,MYB12,MYB4P,DLN156,_,2R_MYB73 ,_,_,GAMYB,C	R2R3-MYB, OsDLN231, OsMYB108, MYB108, OsMYB31, MYB31, Os2R_MYB86, Os2R_MYB86, 2R_MYB86 ,OsMYB4, Osmyb4, OsMyb4, MYB4, OsMYB55, MYB55, OsMyb8, MYB8, OsMYB13b, MYB13b, OsMYB15, MYB15, Os2R_MYB46, 2R_MYB46,R2R3-MYB,OsALYL1,R2R3-MYB,R2R3-MYB,R2R3-MYB,R2R3-MYB, OsDLN31, MYB3, OsMYB22, MYB22, Os2R_MYB18, 2R_MYB18 ,csa, OsCSA,R2R3-MYB, Os2R_MYB97,R2R3-MYB, OsEnS-23, Os2R_MYB20,OsMYB20, MYB20/43, Os2R_MYB30, 2R_MYB30,OsMyb1, OSMYB1, R2R3-MYB, OsDLN141, DLN141, Os2R_MYB55, 2R_MYB55 ,R2R3-MYB,OsCSA2, MYB5, OsMyb5, OSMYB5, Os2R_MYB58, 2R_MYB58,R2R3-MYB, OsGL1A, DLN218, OsDLN218, OsMYB102, MYB102, Os2R_MYB81, 2R_MYB81 ,OsFLP,OsMyb10, Os2R_MYB82, 2R_MYB82,OsMyb9, OsMyb8, OsMYB110, Myb9, Myb8, MYB110, Os2R_MYB87, 2R_MYB87,R2R3-MYB, Os2R_MYB4 ,R2R3-MYB, OsMYB44,R2R3-MYB, Os2R_MYB45,OsJAmyb, JAmyb, OsJAMyb, OsMYB21, MYB21, Os2R_MYB91, 2R_MYB91, OgSH11, OsSH11,R2R3-MYB, OsMYB55/61-L,  MYB55/61-L,  OsMYB55,  OsMYB61-L, MYB55,  MYB61-L, OsMYB61L, MYB61L, OsMYB61b, MYB61b, Os2R_MYB53, 2R_MYB53, OsMYB2P-1, MYB2P-1,OsMyb11, Myb11, OsMYB60, MYB60, Os2R_MYB93, 2R_MYB93 ,OsMYB3R-2, OsMYB3R2, OsMSL07, MSL07, MSL7, DLN28, OsDLN28,R2R3-MYB,OsMYB8, OsMYB305, MYB305, Os2R_MYB9, 2R_MYB9 ,R2R3-MYB, OsMYB19, Os2R_MYB16, 2R_MYB16 ,R2R3-MYB, OsMYB21, Os2R_MYB27, 2R_MYB27,OsMYB55, OsMYB-2, MYB55, MYB-2, OsPL, Os2R_MYB60, 2R_MYB60,OsMyb3, OSMYB3, MYB3, OsGL1D, OsMYB46, MYB46, Kala3, OsKala3, SMG3, OsSMG3, Os2R_MYB39, 2R_MYB39,R2R3-MYB, Os2R_MYB47,R2R3-MYB, OsDLN254, OsMYB2, Os2R_MYB94, 2R_MYB94,R2R3-MYB, Os2R_MYB72 ,R2R3-MYB, OsMYB102, OsMYB81, MYB81,OsMYB42/85, MYB42/85, OsMYB85, MYB85, Os2R_MYB85, 2R_MYB85 ,OsMPS, Os2R_MYB25, 2R_MYB25,OsMyb12, Os2R_MYB89, 2R_MYB89 ,OsMYB4P, Os2R_MYB90, 2R_MYB90,R2R3-MYB, OsDLN156, Os2R_MYB62, 2R_MYB62 ,R2R3-MYB, MYB48/59, OsMYB48/59, Os2R_MYB98, 2R_MYB98,R2R3-MYB, Os2R_MYB73 ,OsMyb4, OSMYB4, MYB4, OsEnS-11, OsGL1C, GL1C, OsMYB13, MYB13, Os2R_MYB11, 2R_MYB11 ,Osmyb7, myb7, OsMYB38, MYB38, Os2R_MYB28, 2R_MYB28,OsGAMYB, GAM1, OsGAMyb, Os-MYBGA, Os GAMYB, OsMYBGA, MYBGA, Os2R_MYB15, 2R_MYB15 ,C, Cp, OsC1, Os-C1, C1, OsMyb6, Myb6, OsPL6, PL6, OsGL1E, GL1E, Os2R_MYB63, 2R_MYB63, OsC1PLSr, C1PLSr
38011	24604734	Fang Y., Xie K., Xiong L.	Conserved miR164-targeted NAC genes negatively regulate drought resistance in rice.	J. Exp. Bot.	65(8)	2119-35	2014	NAM,_,Y37,_,MIR164E,MIR164F,MIR164D,MIR164B,PSK3,MIR164C,NAC104,NAC60,NAC1,TIL1,MIR164A	OsNAM, OMTN5, ONAC092, ONAC92, NAC92, CUC2, OsNAM/CUC2, DLN165, OsDLN165, OsCUC1, CUC1, OsNAM/ OMTN5, OsNAM1, NAM1,OMT7,NAC11, ONAC011, ONAC11, OMTN4, OsY37, OsY37N, OsY37I, OsNAC1, DLN172, OsDLN172, OsNAC092, NAC092, OsNAC92, NAC92,OMT8,miR164e, osa-MIR164e,miR164f, osa-miR164f,miR164d, osa-miR164d,miR164b, osa-miR164b,OsPSK3, GREP2, OMT9, OsPSK5, PSK5,miR164c, osa-miR164c,OMTN6, ONAC104, DLN206, OsDLN206,ONAC060, ONAC60, OMTN3, OsNAC60, DLN265, OsDLN265,OsNAC1, ONAC027, ONAC27, NAC27, OMTN1, OsNAC1/ONAC027, DLN60, OsDLN60, OsORE1,NAC2, OsNAC2, ONAC004, ONAC4, ONAC034, ONAC34, ONAC058, ONAC58, OMTN2, Ostil1, OsNAC2/ONAC004, OsORE1.2, DLN113, OsDLN113,miR164a, osa-miR164a
38012	24489802	Liu G., Li X., Jin S., Liu X., Zhu L., Nie Y., Zhang X.	Overexpression of rice NAC gene SNAC1 improves drought and salt tolerance by enhancing root development and reducing transpiration rate in transgenic cotton.	PLoS ONE	9(1)	e86895	2014	ONAC2	SNAC1, snac1, OsNAC9, ONAC002, ONAC2, ONAC033, ONAC33, ONAC043, ONAC43, ONAC044, ONAC44, OsNAC19, NAC19, SNAC1/ONAC002, OsSNAC1, OsNAC9, OsNAC1
38013	24058359	Nuruzzaman M., Sharoni A.M., Kikuchi S.	Roles of NAC transcription factors in the regulation of biotic and abiotic stress responses in plants.	Front Microbiol	4	248	2013	TIL1,NAC5,ONAC131,ONAC2,ONAC122,RIM1,NAC4,NAC63,NAC122,NAC3,NAC6	NAC2, OsNAC2, ONAC004, ONAC4, ONAC034, ONAC34, ONAC058, ONAC58, OMTN2, Ostil1, OsNAC2/ONAC004, OsORE1.2, DLN113, OsDLN113,OsNAC5, NAC71, ONAC071, ONAC009, ONAC9, ONAC020, ONAC20, OnNAC5*, OnNAC5, OsNAC5/ONAC009,NAC131,SNAC1, snac1, OsNAC9, ONAC002, ONAC2, ONAC033, ONAC33, ONAC043, ONAC43, ONAC044, ONAC44, OsNAC19, NAC19, SNAC1/ONAC002, OsSNAC1, OsNAC9, OsNAC1,NAC122,ONAC054, ONAC54, NAC54, ONAC054alpha, ONAC054beta,OsNAC4, NAC68, ONAC068, OnNAC4*, OnNAC4, OsNAC4/ONAC068,ONAC063, ONAC63,OsNAC10, NAC10, ONAC122, NAC122, OsSNAC10, SNAC10,OsNAC3, NAC67, ONAC067, OnNAC3*, OsNAC3/ONAC067, DLN180, OsDLN180,OsNAC6, ONAC048, NAC48, SNAC2, SNAC2/OsNAC6, OsNAC6/ONAC048, OsSNAC2, SNAC-2, OsSNAC-2, OsNAC2
38014	19697058	Raul A Sperotto, Felipe K Ricachenevsky, Guilherme L Duarte, Boff T., Karina L Lopes, Edilena R Sperb, Michael A Grusak, Janette Palma Fett	Identification of up-regulated genes in flag leaves during rice grain filling and characterization of OsNAC5, a new ABA-dependent transcription factor.	Planta	230(5)	985-1002	2009		
38015	18813954	Fang Y., You J., Xie K., Xie W., Xiong L.	Systematic sequence analysis and identification of tissue-specific or stress-responsive genes of NAC transcription factor family in rice.	Mol. Genet. Genomics	280(6)	547-63	2008	NAC70,NAC72,NAM,NAC32,YL3,_,NAC4,NAC28,NAC75,NAC18,NAC19,NAC41,NAC47,NAC49,NAC82,NAC65,NAC30,NAC35,NAC46,NAC52,NAC64,NAC69,NAC71,NAC76,NAC77,NAC78,NAC80,NAC86,NAC87,NAC89,NAC38,NAC44,NAC61,NAC57,_,NAC94,NAC97,NAC98,NAC99,NAC100,NAC101,NAC102,NAC105,NAC108,NAC110,NAC112,NAC111,NAC113,NAC114,NAC115,NAC116,NAC117,NAC118,NAC119,NAC125,NAC126,NAC128,NAC130,NAC133,NAC137,NAC138,NAC33,NAC135,NAC42,NAC37,NAC34,NAC53,NAC90,NAC43,NAC26,NAC51,NAC140,NAC120,NAC50,NAC129,RIM1,NAC40,NAC25,NAC66,NAC134,NAC83,NAC20,_,NAC16,NAC12,NAC15,NAC6,NAC91,NAC79,NAC14,NAC8,NAC59,NAC13,NAC84,NAC7,NAC21,NAC73,NAC124,NAC136,NAC36,BET1,NAC85,NAC123,NAC95,NAC22,NAC62,CUC1,Y37,NAC31,_,NAC45,NAC3,NAC56,NAC96,NAC17,NAC24,NAC104,NAC127,NAC55,NAC131,NAC121,NAC29,CUC3,_,NAC106,NAC139,NAC103,ONAC300,NAC10,TIL1,NAC58,ONAC2,NAC60,NAC1,NAC63,NAC88,NAC5,TMS5,NAC6,NAC122	ONAC070, ONAC70, OsNTL6, NTL6, OsNAC78,ONAC072, ONAC72, DLN228, OsDLN228,OsNAM, OMTN5, ONAC092, ONAC92, NAC92, CUC2, OsNAM/CUC2, DLN165, OsDLN165, OsCUC1, CUC1, OsNAM/ OMTN5, OsNAM1, NAM1,ONAC032, ONAC32, ONAC056, ONAC56,ONAC109, NAC109, OsYL3,ONAC005, ONAC5, ONAC035, ONAC35, ONAC046, ONAC46, ONAC052, ONAC52,OsNAC4, NAC68, ONAC068, OnNAC4*, OnNAC4, OsNAC4/ONAC068,ONAC028, ONAC28,ONAC075, ONAC75,ONAC018, ONAC18, OsSWN4,ONAC019, ONAC19,ONAC041, ONAC41, ONAC050, ONAC50,ONAC047, ONAC47,ONAC049, ONAC49, ONAC053, ONAC53, NAC53, ONAC057, ONAC57, NAC57,OsSWN6, ONAC082, ONAC82,ONAC065, ONAC65,ONAC030, ONAC30,ONAC035, ONAC35,ONAC046, ONAC46,ONAC052, ONAC52,ONAC064, ONAC64,ONAC069, ONAC69,ONAC071, ONAC71,ONAC076, ONAC76,ONAC077, ONAC77,ONAC078, ONAC78,ONAC080, ONAC80,ONAC086, ONAC86,ONAC087, ONAC87,ONAC089, ONAC89,ONAC038, ONAC38,ONAC044, ONAC44,ONAC061, ONAC61,ONAC057, ONAC57,ONAC001, ONAC1,ONAC094, ONAC94,ONAC097, ONAC97,ONAC098, ONAC98,ONAC099, ONAC99,ONAC100,ONAC101,ONAC102,ONAC105,ONAC108,ONAC110,ONAC112,ONAC111,ONAC113,ONAC114,ONAC115,ONAC116,ONAC117,ONAC118,ONAC119,ONAC125,ONAC126,ONAC128,ONAC130,ONAC133,ONAC137,ONAC138,ONAC033, ONAC33,ONAC135,OsNAC42, ONAC042, ONAC42, ONAC051, ONAC51, OsNTL4, NTL4,ONAC037, ONAC37, OsNTL2, NTL2,ONAC034, ONAC34,ONAC053, ONAC53,OsSWN7, SWN7, ONAC090, ONAC90, VND6, VND4/5/6, OsVND6, OsVND4/5/6, DLN155, OsDLN155,ONAC043, ONAC43, DLN44, OsDLN44,ONAC026, ONAC26, OsEnS-8, DLN11, OsDLN11,ONAC051, ONAC51,ONAC140,ONAC120,ONAC050, ONAC50, OsSGL, SGL, OsNAC02, NAC02,ONAC129, OsNAC129 ,ONAC054, ONAC54, NAC54, ONAC054alpha, ONAC054beta,ONAC040, ONAC40, ONAC054, ONAC54, OsNTL5, NTL5, UCIP17, OsUCIP17,ONAC025, ONAC25, OsEnS-144, OsNAC025, NAC025,ONAC066, ONAC66,ONAC134,ONAC083, ONAC83,ONAC020, ONAC20, DLN1, OsDLN1,ONAC008, ONAC8, NAC8,ONAC016, ONAC16, OsNAC016, OsNAC16,ONAC012, ONAC12,OsNAC15, ONAC015, ONAC15, ONAC069, ONAC69,ONAC006, ONAC6, DLN95, OsDLN95,ONAC091, ONAC91, OsSOG1, SOG1,ONAC079, ONAC79, NAC079, OsNAC079,ONAC014, ONAC14, OsNAC14, NAC14, OsNAC68, NAC68,OsNAC8, ONAC074, ONAC74, NAC74, OsNAC8/ONAC074, OsNTL3, NTL3,ONAC059, ONAC59,ONAC013, ONAC13, ONAC064, ONA064, DLN53, OsDLN53,ONAC084, ONAC84, DLN128, OsDLN128,OsNAC7, ONAC076, NAC76, OsNAC7/ONAC093, ONAC093, ONAC93, NAC93, DLN167, OsDLN167,ONAC021, ONAC21, DLN220, OsDLN220,ONAC073, ONAC73, OsSND2, SND2,ONAC124, DLN245, OsDLN245,ONAC136, OsSTA279,ONAC036, ONAC36, ONAC038, ONAC38, IDEF2, OsIDEF2,BET1, ONAC081, ONAC81, NAC81,ONAC085, ONAC85,ONAC123, N77,ONAC095, ONAC95,ONAC022, ONAC22,ONAC062, ONAC62, OsSND2, SND2,ONAC039, ONAC39, NAC39, OsCUC1, DLN86, OsDLN86,NAC11, ONAC011, ONAC11, OMTN4, OsY37, OsY37N, OsY37I, OsNAC1, DLN172, OsDLN172, OsNAC092, NAC092, OsNAC92, NAC92,ONAC031, ONAC31, OsSWN3,ONAC007, ONAC7, OsSND1, SND1, OsSWN1, SWN1, DLN157, OsDLN157,ONAC045, ONAC45, DLN243, OsDLN243, OsNAM, NAM,OsNAC3, NAC67, ONAC067, OnNAC3*, OsNAC3/ONAC067, DLN180, OsDLN180,ONAC056, ONAC56, OsSWN5, SWN5,NAC94, ONAC096, ONAC96, NAC4, OsNAC4, OsNAC94,ONAC017, ONAC17, ONAC030, ONAC30, OsNAC111,NAC94, ONAC024, ONAC24, OsNAC024, NAC024,OMTN6, ONAC104, DLN206, OsDLN206,ONAC127, OsNAC127, OsEnS-145,ONAC055, ONAC55, CRPG64, OsCRPG64,ONAC131,ONAC121,ONAC029, ONAC29, OsSWN2, OsSWN2L, OsSWN2S, OsNST1/2, SWN2, SWN2L, SWN2S, NST1/2, DLN201, OsDLN201,OsCUC3, ONAC107, NAC107, DLN214, OsDLN214,ONAC003, ONAC3, ONAC016, ONAC16, SNAC3, OsSND3, SND3, OsNAC006, NAC006, ONAC066,ONAC106,ONAC139, OsNAM,ONAC103, OsNAC103, OsNAC18 , NAC18,ONAC077, NAC77, OsNAC77, NAC300, OsNAC300, ONAC132, NAC132, OsNAC132, DLN250, OsDLN250,ONAC010, ONAC10, OsSTA199, OsNAC3, NAC3,NAC2, OsNAC2, ONAC004, ONAC4, ONAC034, ONAC34, ONAC058, ONAC58, OMTN2, Ostil1, OsNAC2/ONAC004, OsORE1.2, DLN113, OsDLN113,OsNAP, NAP, ONAC058, ONAC58, Os PS1, PS1, OsCTb1, CTb1,SNAC1, snac1, OsNAC9, ONAC002, ONAC2, ONAC033, ONAC33, ONAC043, ONAC43, ONAC044, ONAC44, OsNAC19, NAC19, SNAC1/ONAC002, OsSNAC1, OsNAC9, OsNAC1,ONAC060, ONAC60, OMTN3, OsNAC60, DLN265, OsDLN265,OsNAC1, ONAC027, ONAC27, NAC27, OMTN1, OsNAC1/ONAC027, DLN60, OsDLN60, OsORE1,ONAC063, ONAC63,ONAC088, ONAC88, OsNAC52, NAC52,OsNAC5, NAC71, ONAC071, ONAC009, ONAC9, ONAC020, ONAC20, OnNAC5*, OnNAC5, OsNAC5/ONAC009,tms5, NAC18, ONAC023, ONAC23, NAC23, TMS5/ONAC023, OsEnS-30,OsNAC6, ONAC048, NAC48, SNAC2, SNAC2/OsNAC6, OsNAC6/ONAC048, OsSNAC2, SNAC-2, OsSNAC-2, OsNAC2,OsNAC10, NAC10, ONAC122, NAC122, OsSNAC10, SNAC10
38016	0	Shen H., Yin Y., Chen F., Xu Y., Richard A. Dixon	A Bioinformatic Analysis of NAC Genes for Plant Cell Wall Development in Relation to Lignocellulosic Bioenergy Production	Bioenerg. Res.	2	217?232	2009	NAC4,NAC72,Y37,NAC82,NAM,NAC32,NAC3,_,NAC28,NAC61,NAC75,NAC18,NAC85,NAC19,NAC41,NAC47,NAC49,NAC65,NAC30,NAC35,NAC46,NAC52,NAC64,NAC69,NAC71,NAC76,NAC77,NAC78,NAC80,NAC86,NAC87,NAC89,NAC94,NAC38,NAC44,NAC57,_,NAC97,NAC98,NAC99,NAC100,NAC101,NAC102,NAC105,NAC108,NAC110,NAC112,NAC111,NAC113,NAC114,NAC115,NAC116,NAC117,NAC118,NAC119,NAC125,NAC126,NAC128,NAC130,NAC133,NAC137,NAC138,NAC141,NAC142,NAC143,NAC144,NAC145,NAC147,NAC148,NAC149,NAC33,NAC135,NAC34,NAC42,NAC37,NAC73,NAC53,NAC146,NAC90,NAC43,NAC16,NAC20,NAC66,NAC26,NAC50,NAC51,NAC45,NAC140,NAC129,YL3,NAC120,NAC91,NAC79,RIM1,NAC25,NAC134,NAC8,NAC40,NAC56,NAC15,NAC83,NAC70,NAC14,_,NAC12,NAC63,NAC59,NAC6,NAC13,NAC84,NAC7,NAC21,NAC124,NAC136,NAC36,BET1,NAC123,NAC121,NAC95,NAC22,NAC131,NAC62,CUC1,NAC24,NAC96,NAC31,CUC3,_,NAC10,_,NAC29,NAC17,NAC104,NAC127,TMS5,NAC55,NAC122,NAC139,NAC106,NAC58,NAC6,NAC103,ONAC300,ONAC2,TIL1,NAC60,NAC1,NAC88,NAC5	OsNAC4, NAC68, ONAC068, OnNAC4*, OnNAC4, OsNAC4/ONAC068,ONAC072, ONAC72, DLN228, OsDLN228,NAC11, ONAC011, ONAC11, OMTN4, OsY37, OsY37N, OsY37I, OsNAC1, DLN172, OsDLN172, OsNAC092, NAC092, OsNAC92, NAC92,OsSWN6, ONAC082, ONAC82,OsNAM, OMTN5, ONAC092, ONAC92, NAC92, CUC2, OsNAM/CUC2, DLN165, OsDLN165, OsCUC1, CUC1, OsNAM/ OMTN5, OsNAM1, NAM1,ONAC032, ONAC32, ONAC056, ONAC56,OsNAC3, NAC67, ONAC067, OnNAC3*, OsNAC3/ONAC067, DLN180, OsDLN180,ONAC005, ONAC5, ONAC035, ONAC35, ONAC046, ONAC46, ONAC052, ONAC52,ONAC028, ONAC28,ONAC061, ONAC61,ONAC075, ONAC75,ONAC018, ONAC18, OsSWN4,ONAC085, ONAC85,ONAC019, ONAC19,ONAC041, ONAC41, ONAC050, ONAC50,ONAC047, ONAC47,ONAC049, ONAC49, ONAC053, ONAC53, NAC53, ONAC057, ONAC57, NAC57,ONAC065, ONAC65,ONAC030, ONAC30,ONAC035, ONAC35,ONAC046, ONAC46,ONAC052, ONAC52,ONAC064, ONAC64,ONAC069, ONAC69,ONAC071, ONAC71,ONAC076, ONAC76,ONAC077, ONAC77,ONAC078, ONAC78,ONAC080, ONAC80,ONAC086, ONAC86,ONAC087, ONAC87,ONAC089, ONAC89,ONAC094, ONAC94,ONAC038, ONAC38,ONAC044, ONAC44,ONAC057, ONAC57,ONAC001, ONAC1,ONAC097, ONAC97,ONAC098, ONAC98,ONAC099, ONAC99,ONAC100,ONAC101,ONAC102,ONAC105,ONAC108,ONAC110,ONAC112,ONAC111,ONAC113,ONAC114,ONAC115,ONAC116,ONAC117,ONAC118,ONAC119,ONAC125,ONAC126,ONAC128,ONAC130,ONAC133,ONAC137,ONAC138,ONAC141,ONAC142,ONAC143,ONAC144,ONAC145,ONAC147,ONAC148,ONAC149,ONAC033, ONAC33,ONAC135,ONAC034, ONAC34,OsNAC42, ONAC042, ONAC42, ONAC051, ONAC51, OsNTL4, NTL4,ONAC037, ONAC37, OsNTL2, NTL2,ONAC073, ONAC73, OsSND2, SND2,ONAC053, ONAC53,ONAC146,OsSWN7, SWN7, ONAC090, ONAC90, VND6, VND4/5/6, OsVND6, OsVND4/5/6, DLN155, OsDLN155,ONAC043, ONAC43, DLN44, OsDLN44,ONAC016, ONAC16, OsNAC016, OsNAC16,ONAC020, ONAC20, DLN1, OsDLN1,ONAC066, ONAC66,ONAC026, ONAC26, OsEnS-8, DLN11, OsDLN11,ONAC050, ONAC50, OsSGL, SGL, OsNAC02, NAC02,ONAC051, ONAC51,ONAC045, ONAC45, DLN243, OsDLN243, OsNAM, NAM,ONAC140,ONAC129, OsNAC129 ,ONAC109, NAC109, OsYL3,ONAC120,ONAC091, ONAC91, OsSOG1, SOG1,ONAC079, ONAC79, NAC079, OsNAC079,ONAC054, ONAC54, NAC54, ONAC054alpha, ONAC054beta,ONAC025, ONAC25, OsEnS-144, OsNAC025, NAC025,ONAC134,OsNAC8, ONAC074, ONAC74, NAC74, OsNAC8/ONAC074, OsNTL3, NTL3,ONAC040, ONAC40, ONAC054, ONAC54, OsNTL5, NTL5, UCIP17, OsUCIP17,ONAC056, ONAC56, OsSWN5, SWN5,OsNAC15, ONAC015, ONAC15, ONAC069, ONAC69,ONAC083, ONAC83,ONAC070, ONAC70, OsNTL6, NTL6, OsNAC78,ONAC014, ONAC14, OsNAC14, NAC14, OsNAC68, NAC68,ONAC008, ONAC8, NAC8,ONAC012, ONAC12,ONAC063, ONAC63,ONAC059, ONAC59,ONAC006, ONAC6, DLN95, OsDLN95,ONAC013, ONAC13, ONAC064, ONA064, DLN53, OsDLN53,ONAC084, ONAC84, DLN128, OsDLN128,OsNAC7, ONAC076, NAC76, OsNAC7/ONAC093, ONAC093, ONAC93, NAC93, DLN167, OsDLN167,ONAC021, ONAC21, DLN220, OsDLN220,ONAC124, DLN245, OsDLN245,ONAC136, OsSTA279,ONAC036, ONAC36, ONAC038, ONAC38, IDEF2, OsIDEF2,BET1, ONAC081, ONAC81, NAC81,ONAC123, N77,ONAC121,ONAC095, ONAC95,ONAC022, ONAC22,ONAC131,ONAC062, ONAC62, OsSND2, SND2,ONAC039, ONAC39, NAC39, OsCUC1, DLN86, OsDLN86,NAC94, ONAC024, ONAC24, OsNAC024, NAC024,NAC94, ONAC096, ONAC96, NAC4, OsNAC4, OsNAC94,ONAC031, ONAC31, OsSWN3,OsCUC3, ONAC107, NAC107, DLN214, OsDLN214,ONAC003, ONAC3, ONAC016, ONAC16, SNAC3, OsSND3, SND3, OsNAC006, NAC006, ONAC066,ONAC010, ONAC10, OsSTA199, OsNAC3, NAC3,ONAC007, ONAC7, OsSND1, SND1, OsSWN1, SWN1, DLN157, OsDLN157,ONAC029, ONAC29, OsSWN2, OsSWN2L, OsSWN2S, OsNST1/2, SWN2, SWN2L, SWN2S, NST1/2, DLN201, OsDLN201,ONAC017, ONAC17, ONAC030, ONAC30, OsNAC111,OMTN6, ONAC104, DLN206, OsDLN206,ONAC127, OsNAC127, OsEnS-145,tms5, NAC18, ONAC023, ONAC23, NAC23, TMS5/ONAC023, OsEnS-30,ONAC055, ONAC55, CRPG64, OsCRPG64,OsNAC10, NAC10, ONAC122, NAC122, OsSNAC10, SNAC10,ONAC139, OsNAM,ONAC106,OsNAP, NAP, ONAC058, ONAC58, Os PS1, PS1, OsCTb1, CTb1,OsNAC6, ONAC048, NAC48, SNAC2, SNAC2/OsNAC6, OsNAC6/ONAC048, OsSNAC2, SNAC-2, OsSNAC-2, OsNAC2,ONAC103, OsNAC103, OsNAC18 , NAC18,ONAC077, NAC77, OsNAC77, NAC300, OsNAC300, ONAC132, NAC132, OsNAC132, DLN250, OsDLN250,SNAC1, snac1, OsNAC9, ONAC002, ONAC2, ONAC033, ONAC33, ONAC043, ONAC43, ONAC044, ONAC44, OsNAC19, NAC19, SNAC1/ONAC002, OsSNAC1, OsNAC9, OsNAC1,NAC2, OsNAC2, ONAC004, ONAC4, ONAC034, ONAC34, ONAC058, ONAC58, OMTN2, Ostil1, OsNAC2/ONAC004, OsORE1.2, DLN113, OsDLN113,ONAC060, ONAC60, OMTN3, OsNAC60, DLN265, OsDLN265,OsNAC1, ONAC027, ONAC27, NAC27, OMTN1, OsNAC1/ONAC027, DLN60, OsDLN60, OsORE1,ONAC088, ONAC88, OsNAC52, NAC52,OsNAC5, NAC71, ONAC071, ONAC009, ONAC9, ONAC020, ONAC20, OnNAC5*, OnNAC5, OsNAC5/ONAC009
38017	24764506	Todaka D., Nakashima K., Shinozaki K., Kazuko Yamaguchi-Shinozaki	Toward understanding transcriptional regulatory networks in abiotic stress responses and tolerance in rice.	Rice (N Y)	5	6	2012	ABI5,ZFP252,WRKY45,ZFP245,MYB3R2,ZFP179,DREB1F,TRAB1,ERF28,NAC122,DREB2A,BZIP72,ERF3,ERF91,DREB1A,BZIP23,DREB1B,BZIP46,DST,NAC6,ONAC2,NAC5,ERF42,_,TIFY11A	OsABI5, OsbZIP10, OsABF1, OREB1, OsABI5-1, OsABI5-2, OsOREB1, OREB1 ,RZF71, DLN263, OsDLN263,OsWRKY45, OsWRKY45-1, OsWRKY45-2, WRKY45-1, WRKY45-2,OsZFP245, DLN192, OsDLN192, ZOS7-08, OsZOS7-08,OsMYB3R-2, OsMYB3R2, OsMSL07, MSL07, MSL7, DLN28, OsDLN28,OsZFP179, DLN27, OsDLN27,OsERF#027, OsERF027, OsERF27, ERF27, AP2/EREBP#081, AP2/EREBP81, OsDREB1F,OsbZIP66, OsABF5, Osbzip66, OsTRAB1, bZIP66, ABF5,OsERF#028, OsERF028, OsERF28, OsERF#029, OsERF029, OsERF29, ERF29, DERF4, OsDERF4, AP2/EREBP#161, AP2/EREBP161, OsDREB1J, OsDREB1I, OsDREB1G,OsNAC10, NAC10, ONAC122, NAC122, OsSNAC10, SNAC10,OsDREB2A, OsDREB2a, ERF40, OsERF#040, OsERF040, OsERF40, AP2/EREBP#167, AP2/EREBP167,OsbZIP72, OsAREB2, OsABF4, ABF4, Osbzip72, OsABI5, ABI5,AP37, OsAP37, OsERF3, OsERF#075, OsERF075, OsERF75, ERF75, AP2/EREBP#004, AP2/EREBP4, OsBIERF2, BIERF2, DLN23, OsDLN23,OsERF#091, OsERF091, OsERF91, AP59, OsAP59, AP2/EREBP#147, AP2/EREBP147, OsBIERF3, BIERF3,OsDREB1A, Os DREB1A, CBF3, OsCBF3, OsDREB1A/OsCBF3, ERF24, OsERF24, OsERF024, OsERF#024, AP2/EREBP#114, AP2/EREBP114, OsDREBL,OsbZIP23, OsAREB1, OsABF2, Osbzip23, OsAREB2, OsZIP23, ZIP23,OsDREB1B, ERF31, OsERF031, OsERF#031, OsERF31, AP2/EREBP#169, AP2/EREBP169, OsDREB1b, OsDREB1C, OsCBF1, CBF1,ABL1, bZIP46, OsABL1, OsbZIP46, OsAREB8, OsABF2, ABF2, OsABF3, ABF3, OsbZIP46CA1, OsZIP46, ZIP46, OsbZIP46/OsABF2,OsDST, DLN102, OsDLN102, HST1, OsHST1,OsNAC6, ONAC048, NAC48, SNAC2, SNAC2/OsNAC6, OsNAC6/ONAC048, OsSNAC2, SNAC-2, OsSNAC-2, OsNAC2,SNAC1, snac1, OsNAC9, ONAC002, ONAC2, ONAC033, ONAC33, ONAC043, ONAC43, ONAC044, ONAC44, OsNAC19, NAC19, SNAC1/ONAC002, OsSNAC1, OsNAC9, OsNAC1,OsNAC5, NAC71, ONAC071, ONAC009, ONAC9, ONAC020, ONAC20, OnNAC5*, OnNAC5, OsNAC5/ONAC009,OsERF#042, OsERF042, OsERF42, AP2/EREBP#048, AP2/EREBP48, OsDREB2B, DREB2B, OsDREB2B2, OsDREB2A, DREB2A,OsMYB4, Osmyb4, OsMyb4, MYB4, OsMYB55, MYB55, OsMyb8, MYB8, OsMYB13b, MYB13b, OsMYB15, MYB15, Os2R_MYB46, 2R_MYB46,OsJAZ3, JAZ3, OsJAZ 9, OsJAZ9, Os-JAZ9, JAZ9, OsTIFY11a, OsJAZ6, JAZ6
38018	20807373	Myoung-Ryoul Park, Kil-Young Yun, Mohanty B., Herath V., Xu F., Wijaya E., Vladimir B Bajic, Song-Joong Yun, Benildo G De Los Reyes	Supra-optimal expression of the cold-regulated OsMyb4 transcription factor in transgenic rice changes the complexity of transcriptional network with major effects on stress tolerance and panicle development.	Plant Cell Environ.	33(12)	2209-30	2010	_	OsMYB4, Osmyb4, OsMyb4, MYB4, OsMYB55, MYB55, OsMyb8, MYB8, OsMYB13b, MYB13b, OsMYB15, MYB15, Os2R_MYB46, 2R_MYB46
38019	24093634	Nakayama A., Fukushima S., Goto S., Matsushita A., Shimono M., Sugano S., Jiang C.J., Akagi A., Yamazaki M., Inoue H., Takatsuji H.	Genome-wide identification of WRKY45-regulated genes that mediate benzothiadiazole-induced defense responses in rice.	BMC Plant Biol.	13	150	2013	NH1,NAC4,WRKY45,SPL7,WRKY62	OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2, DLN5, OsDLN5,  OsBTBA1, BTBA1,OsNAC4, NAC68, ONAC068, OnNAC4*, OnNAC4, OsNAC4/ONAC068,OsWRKY45, OsWRKY45-1, OsWRKY45-2, WRKY45-1, WRKY45-2,spl7, HSFA4D, HSF10, HSF15, OsHSF15, SP17, OsHsf-15, rHsf10, OsHsfA4d, HSfA4d, lrd13, HSF1,OsWRKY62, OsWRKY62.1, OsWRKY62.2, XB10, OsWRKY62-1, OsWRKY62-2
38020	23696671	Inoue H., Hayashi N., Matsushita A., Xinqiong L., Nakayama A., Sugano S., Jiang C.J., Takatsuji H.	Blast resistance of CC-NB-LRR protein Pb1 is mediated by WRKY45 through protein-protein interaction.	Proc. Natl. Acad. Sci. U.S.A.	110(23)	9577-82	2013	WRKY45,PB1	OsWRKY45, OsWRKY45-1, OsWRKY45-2, WRKY45-1, WRKY45-2,Pb1, Pbst, RMG58.
38021	16117849	Xiao Qiang Liu, Xian Quan Bai, Qian Q., Xiu Jie Wang, Ming Sheng Chen, Cheng Cai Chu	OsWRKY03, a rice transcriptional activator that functions in defense signaling pathway upstream of OsNPR1.	Cell Res.	15(8)	593-603	2005	PAL1,NH1,WRKY12,POX22.3,PR1B	OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6,OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2, DLN5, OsDLN5,  OsBTBA1, BTBA1,OsWRKY12,POX22.3, OSPER, OsPOX, POX, Pir3, prx111, POX22, OsPOX1, POX1, OsPOX22.3, OsPR9, PR9,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1, OsPR1a, PR1a
38022	24619999	Ni D.H., Li J., Duan Y.B., Yang Y.C., Wei P.C., Xu R.F., Li C.R., Liang D.D., Li H., Song F.S., Ni J.L., Li L., Yang J.B.	Identification and utilization of cleistogamy gene cl7(t) in rice (Oryza sativa L.).	J. Exp. Bot.	65(8)	2107-17	2014	EP2	ep2, EP2/DEP2/SRS1, SRS1/DEP2, DEP2, SRS1, OsSRS1, CL7(t), OsRELA, RELA
38023	24503697	Park C., Jeong N.Y., Kim G.Y., Han M.H., Chung I.M., Kim W.J., Yoo Y.H., Choi Y.H.	Momilactone B induces apoptosis and G1 arrest of the cell cycle in human monocytic leukemia U937 cells through downregulation of pRB phosphorylation and induction of the cyclin-dependent kinase inhibitor p21Waf1/Cip1.	Oncol. Rep.	31(4)	1653-60	2014		
38024	24661882	Wang D., Guo C., Huang J., Yang S., Tian D., Zhang X.	Allele-mining of rice blast resistance genes at AC134922 locus.	Biochem. Biophys. Res. Commun.	446(4)	1085-90	2014		
38025	24643423	Gui H., Li X., Liu Y., Han K., Li X.	The relationship between PMI (manA) gene expression and optimal selection pressure in Indica rice transformation.	Plant Cell Rep.	33(7)	1081-90	2014		
38026	24406793	Saika H., Horita J., Taguchi-Shiobara F., Nonaka S., Ayako N.Y., Iwakami S., Hori K., Matsumoto T., Tanaka T., Itoh T., Yano M., Kaku K., Shimizu T., Toki S.	A novel rice cytochrome P450 gene, CYP72A31, confers tolerance to acetolactate synthase-inhibiting herbicides in rice and Arabidopsis.	Plant Physiol.			2014	CYP72A31,CYP72A33,CYP72A32,BEL	,,OsCYP72A32,bel, bel-a(8077S), bel-b(=bsl, Norin8m), CYP81A6, OsCYP81A6, OsCYP81Q32, CYP81Q32, OsCYP71U8, CYP71U8
38027	24530223	Basu S., Roychoudhury A., Sengupta D.N.	Identification of trans-acting factors regulating SamDC expression in Oryza sativa.	Biochem. Biophys. Res. Commun.	445(2)	398-403	2014		
38028	24460889	Choudhary B., Gheysen G., Buysse J., van der Meer P., Burssens S.	Regulatory options for genetically modified crops in India.	Plant Biotechnol. J.	12(2)	135-46	2014		
38029	24642883	Chen J., Zhang Y., Liu J., Xia M., Wang W., Shen F.	Genome-wide analysis of the RNA helicase gene family in Gossypium raimondii.	Int J Mol Sci	15(3)	4635-56	2014		
38030	24450460	Li J.B., Lu L., Jia Y., Li C.	Effectiveness and durability of the rice Pi-ta gene in Yunnan province of China.	Phytopathology	104(7)	762-8	2014		
38031	24498868	Naranjo L., Tal?n M., Domingo C.	Diversity of floral regulatory genes of japonica rice cultivated at northern latitudes.	BMC Genomics	15	101	2014		
38032	24416331	Gardiner D.M., Upadhyaya N.M., Stiller J., Ellis J.G., Dodds P.N., Kazan K., Manners J.M.	Genomic analysis of Xanthomonas translucens pathogenic on wheat and barley reveals cross-kingdom gene transfer events and diverse protein delivery systems.	PLoS ONE	9(1)	e84995	2014		
38033	24498271	Piao R., Chu S.H., Jiang W., Yu Y., Jin Y., Woo M.O., Lee J., Kim S., Koh H.J.	Isolation and Characterization of a Dominant Dwarf Gene, D-h, in Rice.	PLoS ONE	9(2)	e86210	2014	DH	D-h(t)*, Dwf43, D-h
38034	24612254	Tripathi J.N., Lorenzen J., Bahar O., Ronald P., Tripathi L.	Transgenic expression of the rice Xa21 pattern-recognition receptor in banana (Musa sp.) confers resistance to Xanthomonas campestris pv. musacearum.	Plant Biotechnol. J.			2014		
38035	24344976	Ali M.A., Dillstrom V.T., Lai J.Y., Violi A.	Ab initio investigation of the thermal decomposition of n-butylcyclohexane.	J Phys Chem A	118(6)	1067-76	2014		
38036	24481057	Arun T.A., Madhavan A.A., Chacko D.K., Anjusree G.S., Deepak T.G., Thomas S., Nair S.V., Nair A.S.	A facile approach for high surface area electrospun TiO2 nanostructures for photovoltaic and photocatalytic applications.	Dalton Trans	43(12)	4830-7	2014		
38037	24642612	Lin C., Li R., Cheng H., Wang J., Shao X.	Tungsten Distribution in Soil and Rice in the Vicinity of the World's Largest and Longest-Operating Tungsten Mine in China.	PLoS ONE	9(3)	e91981	2014		
38038	24433490	Byeon Y., Park S., Lee H.Y., Kim Y.S., Back K.	Elevated production of melatonin in transgenic rice seeds expressing rice tryptophan decarboxylase.	J. Pineal Res.	56(3)	275-282	2014		
38039	24633351	Singh P.K., Thakur S., Rathour R., Variar M., Prashanthi S.K., Singh A.K., Singh U.D., Sharma V., Singh N.K., Sharma T.R.	Transposon-based high sequence diversity in Avr-Pita alleles increases the potential for pathogenicity of Magnaporthe oryzae populations.	Funct. Integr. Genomics	14(2)	419-29	2014		
38040	24414168	Sahoo R.K., Ansari M.W., Pradhan M., Dangar T.K., Mohanty S., Tuteja N.	Phenotypic and molecular characterization of native Azospirillum strains from rice fields to improve crop productivity.	Protoplasma	251(4)	943-53	2014		
38041	24443494	Sugano S.S., Shirakawa M., Takagi J., Matsuda Y., Shimada T., Hara-Nishimura I., Kohchi T.	CRISPR/Cas9-Mediated Targeted Mutagenesis in the Liverwort Marchantia polymorpha L.	Plant Cell Physiol.	55(3)	475-81	2014		
38042	24451326	Schmidt R., Caldana C., Mueller-Roeber B., Schippers J.H.	The contribution of SERF1 to root-to-shoot signaling during salinity stress in rice.	Plant Signal Behav	9(1)	e27540	2014	ERF131	OsERF#131, OsERF131, AP2/EREBP#094, AP2/EREBP94, SERF1, OsSERF1
38043	24494805	Ezenwaka C.E., Okoye O., Esonwune C., Dioka C., Onuoha P., Osuji C., Oguejiofor O.C., Meludu S.C.	Is diabetes patients' knowledge of laboratory tests for monitoring blood glucose levels associated with better glycaemic control?	Arch. Physiol. Biochem.	120(2)	86-90	2014		
38044	24554344	Cha S., Srinivasan S., Seo T., Kim M.K.	Deinococcus soli sp. nov., a Gamma-Radiation-Resistant Bacterium Isolated from Rice Field Soil.	Curr. Microbiol.	68(6)	777-83	2014		
38045	24663444	Sharma R., Sahoo A., Devendran R., Jain M.	Over-expression of a rice tau class glutathione s-transferase gene improves tolerance to salinity and oxidative stresses in Arabidopsis.	PLoS ONE	9(3)	e92900	2014		
38046	24374919	Minato K.	Hexanoyl-lysine as a deterioration marker for rice during storage.	Subcell. Biochem.	77	73-82	2014		
38047	24600019	Lemos Batista B., Nigar M., Mestrot A., Alves Rocha B., Barbosa J?nior F., Price A.H., Raab A., Feldmann J.	Identification and quantification of phytochelatins in roots of rice to long-term exposure: evidence of individual role on arsenic accumulation and translocation.	J. Exp. Bot.	65(6)	1467-79	2014		
38048	24401405	Chen G., Chen T.	SPE speciation of inorganic arsenic in rice followed by hydride-generation atomic fluorescence spectrometric quantification.	Talanta	119	202-6	2014		
38049	24390243	Qian Y., Xi Y., Cheng B., Zhu S., Kan X.	Identification and characterization of the SET domain gene family in maize.	Mol. Biol. Rep.	41(3)	1341-54	2014		
38050	24549114	Guo X., Wen F., Zheng N., Luo Q., Wang H., Wang H., Li S., Wang J.	Development of an ultrasensitive aptasensor for the detection of aflatoxin B1.	Biosens Bioelectron	56	340-4	2014		
38051	24504698	Piedrah?ta-Aguirre CA., Bastos R.G., Carvalho A.L., Monte Alegre R.	The influence of process parameters in production of lipopeptide iturin A using aerated packed bed bioreactors in solid-state fermentation.	Bioprocess Biosyst Eng			2014		
38052	24434621	Cheng A.X., Han X.J., Wu Y.F., Lou H.X.	The function and catalysis of 2-oxoglutarate-dependent oxygenases involved in plant flavonoid biosynthesis.	Int J Mol Sci	15(1)	1080-95	2014		
38053	24323625	Wu C.S., Yang W.K., Lee T.H., Gomez-Mestre I., Kam Y.C.	Salinity acclimation enhances salinity tolerance in tadpoles living in brackish water through increased Na? , K? -ATPase expression.	J Exp Zool A Ecol Genet Physiol	321(1)	57-64	2014		
38054	24691103	Kumar K., Sinha A.K.	Genome-wide transcriptome modulation in rice transgenic lines expressing engineered Mitogen activated protein kinase kinase 6.	Plant Signal Behav	9(3)	e28502	2014		
38055	24587364	Li J., Lu J., Li X., Ren T., Cong R., Zhou L.	Dynamics of potassium release and adsorption on rice straw residue.	PLoS ONE	9(2)	e90440	2014		
38056	24632997	Wang C., Liu X., Peng S., Xu Q., Yuan X., Feng Y., Yu H., Wang Y., Wei X.	Development of Novel Microsatellite Markers for the BBCC Oryza Genome (Poaceae) Using High-Throughput Sequencing Technology.	PLoS ONE	9(3)	e91826	2014		
38057	24557528	Jiao W., Ouyang W., Hao F., Liu B., Wang F.	Geochemical variability of heavy metals in soil after land use conversions in Northeast China and its environmental applications.	Environ Sci Process Impacts	16(4)	924-31	2014		
38058	24571270	Byeon Y., Back K.	An increase in melatonin in transgenic rice causes pleiotropic phenotypes, including enhanced seedling growth, delayed flowering, and low grain yield.	J. Pineal Res.	56(4)	408-14	2014		
38059	24274014	Cao J., Xu J., Zhao T., Cao D., Huang X., Zhang P., Luan F.	Flanking sequence determination and specific PCR identification of transgenic wheat B102-1-2.	Prep. Biochem. Biotechnol.	44(3)	257-65	2014		
38060	24561073	Wang Y.C., Ho R.C., Feng C.C., Namsanor J., Sithithaworn P.	An ecological study of Bithynia snails, the first intermediate host of Opisthorchis viverrini in northeast Thailand.	Acta Trop.	141(ptB)	244-52	2014		
38061	24626216	Gupta R., Deswal R.	Refolding of beta-Stranded Class I Chitinases of Hippophae rhamnoides Enhances the Antifreeze Activity during Cold Acclimation.	PLoS ONE	9(3)	e91723	2014		
38062	24446340	Meng M., Gao X., Han L.J., Li X.Y., Wu D., Li H.Z., Chen Q.J.	Correlation analysis between starch properties and single nucleotide polymorphisms of Waxy genes in common rye (Secale cereale L.).	Genet. Mol. Res.	13(AOP)	2574-89	2014		
38063	24509730	Yun L., Larson S.R., Mott I.W., Jensen K.B., Staub J.E.	Genetic control of rhizomes and genomic localization of a major-effect growth habit QTL in perennial wildrye.	Mol. Genet. Genomics	289(3)	383-97	2014		
38064	24678507	Zhang Y., Zheng R., Zhao J., Ma F., Zhang Y., Meng Q.	Characterization of H3PO4-Treated Rice Husk Adsorbent and Adsorption of Copper(II) from Aqueous Solution.	Biomed Res Int	2014	496878	2014		
38065	24597823	Nunes A.L., Delatorre C.A., Merotto A.	Gene expression related to Seed shattering and the cell wall in cultivated and weedy rice.	Plant Biol (Stuttg)			2014		
38066	24136530	Neilson K.A., George I.S., Emery S.J., Muralidharan S., Mirzaei M., Haynes P.A.	Analysis of rice proteins using SDS-PAGE shotgun proteomics.	Methods Mol. Biol.	1072	289-302	2014		
38067	24482190	Srivastava R.K., Pandey P., Rajpoot R., Rani A., Dubey R.S.	Cadmium and lead interactive effects on oxidative stress and antioxidative responses in rice seedlings.	Protoplasma			2014		
38068	24520156	Lin M.Y., Chai K.H., Ko S.S., Kuang L.Y., Lur H.S., Charng Y.Y.	A Positive Feedback Loop between HEAT SHOCK PROTEIN101 and HEAT STRESS-ASSOCIATED 32-KD PROTEIN Modulates Long-Term Acquired Thermotolerance Illustrating Diverse Heat Stress Responses in Rice Varieties.	Plant Physiol.	164(4)	2045-53	2014		
38069	24646013	Lu W., Liu F., Emre R., Liu J.	Collision Dynamics of Protonated N-Acetylmethionine with Singlet Molecular Oxygen (a(1)Deltag): The Influence of the Amide Bond and Ruling Out the Complex-Mediated Mechanism at Low Energies.	J Phys Chem B	118(14)	3844-52	2014		
38070	24616556	Archak S., Nagaraju J.	Computational analyses of protein coded by rice (Oryza sativa japonica) cDNA (GI: 32984786) indicate lectin like Ca(2+) binding properties for Eicosapenta Peptide Repeats (EPRs).	Bioinformation	10(2)	63-7	2014	ILA1	IIP1
38071	24586634	Unbehend M., H?nniger S., V?squez GM., Ju?rez ML., Reisig D., McNeil J.N., Meagher R.L., Jenkins D.A., Heckel D.G., Groot A.T.	Geographic variation in sexual attraction of Spodoptera frugiperda corn- and rice-strain males to pheromone lures.	PLoS ONE	9(2)	e89255	2014		
38072	24506331	Arnal N., Quadrado M., Simon M., Mireau H.	A restorer-of-fertility like pentatricopeptide repeat gene directs ribonucleolytic processing within the coding sequence of rps3-rpl16 and orf240a mitochondrial transcripts in Arabidopsis thaliana.	Plant J.	78(1)	134-45	2014		
38073	24670252	Abe N., Asai H., Yago H., Oitome N.F., Itoh R., Crofts N., Nakamura Y., Fujita N.	Relationships between starch synthase I and branching enzyme isozymes determined using double mutant rice lines.	BMC Plant Biol.	14(1)	80	2014	SBE1,SBE3,SSI	sbe1, Rbe1. Sbe1, sbe1*(QEI), RBE1, BEI, SBE I, QEI, OsBEI, BE1, OsSBE1, OsSBEI, SBEI,SBEIII*, SBEIII, Sbe3, RBE3, QEIIa, QEIIA, BEIIb, BEIIB, SBEIIb, OsBEIIb, sbe3, SBE III, OsSBEIIb, SBEIIb,OsSSI, SSS 1, SSS1, SS1, OsSS1, SSSI, OsSSSI
38074	24625596	Setyawan W., Kurtz R.J.	Ab initio study of H, He, Li and Be impurity effect in tungsten Sigma3{1?1?2} and Sigma27{5?5?2} grain boundaries.	J Phys Condens Matter	26(13)	135004	2014		
38075	24678922	Mu X., Song T., Xu M., Lai C.K., Siu C.K., Laskin J., Chu I.K.	Discovery and Mechanistic Studies of Facile N-Terminal Calpha-C Bond Cleavages in the Dissociation of Tyrosine-Containing Peptide Radical Cations.	J Phys Chem B			2014		
38076	24634590	Santaweesuk S., Chapman R.S., Siriwong W.	Effects of an injury and illness prevention program on occupational safety behaviors among rice farmers in Nakhon Nayok Province, Thailand.	Risk Manag Healthc Policy	7	51-60	2014		
38077	24478940	Xue Y., Shui G., Wenk M.R.	TPS1 drug design for rice blast disease in magnaporthe oryzae.	Springerplus	3	18	2014		
38078	24594398	Chen P., Li X., Huo K., Wei X., Dai C., Lv C.	Promotion of photosynthesis in transgenic rice over-expressing of maize C4 phosphoenolpyruvate carboxylase gene by nitric oxide donors.	J. Plant Physiol.	171(6)	458-66	2014		
38079	24673767	Khalil H.B., Brunetti S.C., Pham U.M., Maret D., Laroche A., Gulick P.J.	Characterization of the caleosin gene family in the Triticeae.	BMC Genomics	15(1)	239	2014		
38080	24590240	Ramachandran P., Zhao Z., Singh R., Dhiman S.S., Choi J.H., Kim D., Haw J.R., Lee J.K.	Characterization of a beta-1,4-mannanase from a newly isolated strain of Pholiota adiposa and its application for biomass pretreatment.	Bioprocess Biosyst Eng			2014		
38081	24530725	Zhang J.J., Lu Y.C., Zhang J.J., Tan L.R., Yang H.	Accumulation and toxicological response of atrazine in rice crops.	Ecotoxicol. Environ. Saf.	102	105-12	2014		
38082	24588385	Siripornadulsil S., Thanwisai L., Siripornadulsil W.	Changes in the proteome of the cadmium-tolerant bacteria Cupriavidus taiwanensis KKU2500-3 in response to cadmium toxicity.	Can. J. Microbiol.	60(3)	121-31	2014		
38083	24634478	Liu T., Kim D.W., Niitsu M., Maeda S., Watanabe M., Kamio Y., Berberich T., Kusano T.	Polyamine oxidase 7 is a Terminal Catabolism-type Enzyme in Oryza sativa and is Specifically Expressed in Anthers.	Plant Cell Physiol.	55(6)	1110-22	2014		
38084	24604591	Cheal S.M., Punzalan B., Doran M.G., Evans M.J., Osborne J.R., Lewis J.S., Zanzonico P., Larson S.M.	Pairwise comparison of (89)Zr- and (124)I-labeled cG250 based on positron emission tomography imaging and nonlinear immunokinetic modeling: in vivo carbonic anhydrase IX receptor binding and internalization in mouse xenografts of clear-cell renal cell carcinoma.	Eur. J. Nucl. Med. Mol. Imaging	41(5)	985-94	2014		
38085	24584028	Chen J., Li X., Cheng C., Wang Y., Qin M., Zhu H., Zeng R., Fu X., Liu Z., Zhang G.	Characterization of epistatic interaction of QTLs LH8 and EH3 controlling heading date in rice.	Sci Rep	4	4263	2014	SE1,HD5,EF1	Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, OsHd1,  Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,Hd5(t)*, Hd5, qHD5, HAP3H, OsHAP3H, NF-YB, CBF-A, DTH8 , qHD5(t)*, Ghd8, Ghd8/DTH8, Lhd1, NF-YB11, OsNF-YB11, NFYB11, LH8, DTH8/Ghd8, RH8, DTH8/Ghd8/LHD1, CAR8, DTH8/Ghd8/ OsHAP3H, EF8, OsEF8,Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 
38086	24667992	Zhang C., Bai M.Y., Chong K.	Brassinosteroid-mediated regulation of agronomic traits in rice.	Plant Cell Rep.	33(5)	683-96	2014	BRD1, LIC,D2,IBH1,D11,ILI1,DLT,SG1,D61,BRD2,BZR1,D1,LC2,BU1,ELF1,RAVL1,LC1,BRL1,SG2,GW6,BRL3	brd1, OsDWARF, DWARF, OsBR6ox, BR6ox, CYP85A1, CYP85A4, OsDWF, CYP85A1/OsDWARF, OsBRD1, OsCYP85A1,OsC3H46, C3H46, OsLIC, OsFLA6, FLA6,d2, dwf2, CYP90D2, D2/CYP90D2, OsD2, SMG11, OsSMG11, D2/SMG11, OsD2a, OsD2b,Os IBH1, OsIBH1, OsbHLH175, bHLH175,d11(d8), dwf10, d8, D11/CYP724B1, d11, CYP724B1, GNS4, OsD11, PMM1, OsPMM1, PMM1/D11, NBG4, OsCPB1, CPB1, CPB1/D11,OsbHLH154, bHLH154, OsILI1,dlt, OsGRAS32, OsDLT, OsDLT1, DTL1, OsGRAS-32, OsGRAS32, GRAS-32, GRAS32, SMOS2/DLT, SMOS2, OsSMOS2, OsGS6, GS6,OsSG1, Sg1,d61*, dwf42, d61, OsBRI1, OSBRI1, BRI1, Os BRI1, Osbri1, OsBRKq1, BRKq1,brd2, OsBRD2, Dim/dwf1, Dim, dwf1, OsDWF1, DWF1, LTBSG1, OsLTBSG1, LHDD10, OsLHDD10, OsD-LDH3, D-LDH3,OsBZR1, Os BZR1, OsBES1-6, BES1-6,d1, GPA1, GA1, OsGA1, RGA1, dwf1, XA7, RGA, D1/RGA1, D89, TGW5, OsTGW5, SRG5, OsSRG5,OsLC2, OsVIL2, VIL2, OsVIL3,ILI4, OsILI4 , OsBU1, BU1/ILI4, OsbHLH172, bHLH172,OsPUB31, PUB31, OsPUB75, PUB75, TUD1, OsTUD1, DSG1,  OsPUB75, PUB75,RAVL, OsRAVL1, OsNGA3, NGA3,OsGH3-1, GH3-1, OsGH3.1,GH3.1, OsLC1,OsBRL1,OsSERK1, SERK1, OsBAK1, BAK1, OsSERK1/OsBAK1, OsBISERK1, BISERK1, OsSerk1, OsBAK1-1, 08SG2/OsBAK1, 08SG2, OsSG2,OsGSR1, GSR1, OsGASR7, GASR7, OsGW6, OsGASR7/GW6,OsBRL3
38087	24485316	Yang Y., Wan P.J., Hu X.X., Li G.Q.	RNAi mediated knockdown of the ryanodine receptor gene decreases chlorantraniliprole susceptibility in Sogatella furcifera.	Pestic Biochem Physiol	108	58-65	2014		
38088	24726274	Endo T., Uebayashi N., Ishida S., Ikeuchi M., Sato F.	Light energy allocation at PSII under field light conditions: How much energy is lost in NPQ-associated dissipation?	Plant Physiol. Biochem.			2014		
38089	24488967	Yang Y., Crofts A.J., Crofts N., Okita T.W.	Multiple RNA binding protein complexes interact with the rice prolamine RNA cis-localization zipcode sequences.	Plant Physiol.	164(3)	1271-82	2014	_,_,_,RBPJ,GL11	RBPK, RBP-K,RBPQ, RBP-Q,RBPI, RBP-I,OSRBPJ, RBP-J, OsRBP-J,OsGL11, RBPA, OsRBPA, RBP-A, OsRBP-A
38090	24507455	Han J., Fang J., Wang C., Yin Y., Sun X., Leng X., Song C.	Grapevine microRNAs responsive to exogenous gibberellin.	BMC Genomics	15	111	2014		
38091	24625559	Wang W., Li G., Zhao J., Chu H., Lin W., Zhang D., Wang Z., Liang W.	DWARF TILLER1, a WUSCHEL-Related Homeobox Transcription Factor, Is Required for Tiller Growth in Rice.	PLoS Genet.	10(3)	e1004154	2014	DWT1,WOX9C,SLR1,WOX9	OsWOX7, Os WOX7, WOX7, OsWOX9A, DWT1/WOX9A, OsDWT1, WOX9A,OsWOX9C, DWL2, OsDWL2, DWL2/WOX9C,slr1-1, slr1, slr, GAI, OsGAI, OsSLR1, Os SLR1, OsRGA1, OsGRAS-18, OsGRAS-18, GRAS-18, GRAS18, SLR-1,OsWOX9, DWL1
38092	24584249	Wang F., Zhang S., Liu M.G., Lin X.S., Liu H.J., Peng Y.L., Lin Y., Huang J.B., Luo C.X.	Genetic Diversity Analysis Reveals that Geographical Environment Plays a More Important Role than Rice Cultivar in Villosiclava virens Population Selection.	Appl. Environ. Microbiol.	80(9)	2811-20	2014		
38093	24590858	Folsom J.J., Begcy K., Hao X., Wang D., Walia H.	Rice FIE1 regulates seed size under heat stress by controlling early endosperm development.	Plant Physiol.	165(1)	238-48	2014		
38094	24575773	Shingaki-Wells R., Millar A.H., Whelan J., Narsai R.	What happens to plant mitochondria under low oxygen? An omics review of the responses to low oxygen and re-oxygenation.	Plant Cell Environ.			2014		
38095	24564253	Pereira A.L., Carazzolle M.F., Abe V.Y., de Oliveira ML., Domingues M.N., Silva J.C., Cernadas R.A., Benedetti C.E.	Identification of putative TAL effector targets of the citrus canker pathogens shows functional convergence underlying disease development and defense response.	BMC Genomics	15	157	2014		
38096	24634194	Chen Q.F., Ya H.Y., Feng Y.R., Jiao Z.	Expression of the Key Genes Involved in ABA Biosynthesis in Rice Implanted by Ion Beam.	Appl. Biochem. Biotechnol.	173(1)	239-47	2014		
38097	24684666	Fern?ndez G?mez J., Wilson Z.A.	A barley PHD finger transcription factor that confers male sterility by affecting tapetal development.	Plant Biotechnol. J.			2014		
38098	24478288	Kalia P., Vizcay-Barrena G., Fan J.P., Warley A., Di Silvio L., Huang J.	Nanohydroxyapatite shape and its potential role in bone formation: an analytical study.	J R Soc Interface	11(93)	20140004	2014		
38099	24473456	Kim D.H., Kim S.H., Kwon S.W., Lee J.K., Hong S.B.	Aspergillus cumulatus sp. nov., from Rice Straw and Air for Meju Fermentation.	J. Microbiol. Biotechnol.	24(3)	334-6	2014		
38100	24615161	Chong K., Xu Z.	Investment in plant research and development bears fruit in China.	Plant Cell Rep.	33(4)	541-50	2014		
38101	24478945	Bankeeree W., Lotrakul P., Prasongsuk S., Chaiareekij S., Eveleigh D.E., Kim S.W., Punnapayak H.	Effect of polyols on thermostability of xylanase from a tropical isolate of Aureobasidium pullulans and its application in prebleaching of rice straw pulp.	Springerplus	3	37	2014		
38102	24727792	Xiong H., Guo X., Kobayashi T., Kakei Y., Nakanishi H., Nozoye T., Zhang L., Shen H., Qiu W., Nishizawa N.K., Zuo Y.	Expression of peanut Iron Regulated Transporter 1 in tobacco and rice plants confers improved iron nutrition.	Plant Physiol. Biochem.	80C	83-89	2014		
38103	24648215	Li W.X., Zhao H.J., Pang W.Q., Cui H.R., Poirier Y., Shu Q.Y.	Seed-specific silencing of OsMRP5 reduces seed phytic acid and weight in rice.	Transgenic Res.	23(4)	585-99	2014		
38104	24482434	Liu L., Jin L., Huang X., Geng Y., Li F., Qin Q., Wang R., Ji S., Zhao S., Xie Q., Wei C., Xie C., Ding B., Li Y.	OsRFPH2-10, a RING-H2 Finger E3 Ubiquitin Ligase, Is Involved in Rice Antiviral Defense in the Early Stages of Rice dwarf virus Infection.	Mol Plant	7(6)	1057-60	2014	RFI2	OsRFPH2-10, RFPH2-10, OsRFI2, UCIP1, OsUCIP1,  OsRING344, RING344
38105	24728502	Zhuang P., Lu H., Li Z., Zou B., McBride M.B.	Multiple Exposure and Effects Assessment of Heavy Metals in the Population near Mining Area in South China.	PLoS ONE	9(4)	e94484	2014		
38106	24388510	Shen G., Zhan W., Chen H., Xing Y.	Dominance and epistasis are the main contributors to heterosis for plant height in rice.	Plant Sci.	215-216	11-8	2014		
38107	24475267	Fernandez J., Wilson R.A.	Characterizing roles for the glutathione reductase, thioredoxin reductase and thioredoxin peroxidase-encoding genes of Magnaporthe oryzae during rice blast disease.	PLoS ONE	9(1)	e87300	2014		
38108	24399256	Xu Y., Chen Y.H., Yu X.	Cell culture of the rice brown planthopper, Nilaparvata lugens St?l (Hemiptera: Delphacidae).	In Vitro Cell. Dev. Biol. Anim.	50(5)	384-8	2014		
38109	24720214	Ma L.M., Wang P.T., Wang S.G.	[Effect of flooding time length on mycorrhizal colonization of three AM fungi In two wetland plants].	Huan Jing Ke Xue	35(1)	263-70	2014		
38110	24291309	Narra M., Balasubramanian V., Mehta H., Dixit G., Madamwar D., Shah A.R.	Performance evaluation of anaerobic hybrid reactors with different packing media for treating wastewater of mild alkali treated rice straw in ethanol fermentation process.	Bioresour. Technol.	152	59-65	2014		
38111	24477586	Kalyana Babu B., Pandey D., Agrawal P.K., Sood S., Kumar A.	In-silico mining, type and frequency analysis of genic microsatellites of finger millet (Eleusine coracana (L.) Gaertn.): a comparative genomic analysis of NBS-LRR regions of finger millet with rice.	Mol. Biol. Rep.	41(5)	3081-90	2014		
38112	24440828	Zhou S.S., Sun Z., Ma W., Chen W., Wang M.Q.	De novo analysis of the Nilaparvata lugens (St?l) antenna transcriptome and expression patterns of olfactory genes.	Comp. Biochem. Physiol. Part D Genomics Proteomics	9	31-9	2014		
38113	24589383	Gu Y., Chen X., Liu Z., Zhou X., Zhang Y.	Effect of inoculum sources on the anaerobic digestion of rice straw.	Bioresour. Technol.	158C	149-155	2014		
38114	24667442	Dan Z., Liu P., Huang W., Zhou W., Yao G., Hu J., Zhu R., Lu B., Zhu Y.	Balance between a Higher Degree of Heterosis and Increased Reproductive Isolation: A Strategic Design for Breeding Inter-Subspecific Hybrid Rice.	PLoS ONE	9(3)	e93122	2014		
38115	24460537	Yan Y., Wang H., Hamera S., Chen X., Fang R.	miR444a has multiple functions in the rice nitrate-signaling pathway.	Plant J.	78(1)	44-55	2014	MADS23,PT11,PTR6,HTNE,MADS57,PT1,MIR444A,PT7,MADS27	OsMADS23, MADS-23,OsPT11, PHT1-11, OsPht1;11, ORYsa;PHT1;11,OsPTR6, OsNRT1;2, NRT1;2, OsNPF7.3, NPF7.3 ,NRT2.3, OsNRT2.3, OsNRT2;1, OsNRT2.3a, OsNRT2.3b, OsNRT2;3a, OsNRT2.5 ,OsMADS57, MADS-57,OsPT1, PHT1-1, OsPht1;1, Pht1;1, OsPHT1;1, PHT1;1,OsMIR444a, osa-MIR444a, miR444aosa-miR444a osa-miR444a-3p.1 osa-miR444a-3p.2 osa-miR444a-5p,OsPT7, PHT1-7, OsPht1;7,OsMADS27, MADS-27a, OsSTA66, OsMADS27a
38116	24329817	Carvalho F.E., Ribeiro C.W., Martins M.O., Bonifacio A., Staats C.C., Andrade C.M., Cerqueira J.V., Margis-Pinheiro M., Silveira J.A.	Cytosolic APX knockdown rice plants sustain photosynthesis by regulation of protein expression related to photochemistry, Calvin cycle and photorespiration.	Physiol Plant	150(4)	632-45	2014		
38117	24667308	Wang S.T., Sun X.L., Hoshino Y., Yu Y., Jia B., Sun Z.W., Sun M.Z., Duan X.B., Zhu Y.M.	MicroRNA319 Positively Regulates Cold Tolerance by Targeting OsPCF6 and OsTCP21 in Rice (Oryza sativa L.).	PLoS ONE	9(3)	e91357	2014	DREB1B,MIR319B,TPP2,TPP1,TCP21,PCF6	OsDREB1B, ERF31, OsERF031, OsERF#031, OsERF31, AP2/EREBP#169, AP2/EREBP169, OsDREB1b, OsDREB1C, OsCBF1, CBF1,OsmiR319b, Osa-miR319b,OsTPP2,OsTPP1, OsTPS, TPP,OsTCP21,OsPCF6
38118	24398922	Abu-Zaitoon YM.	Phylogenetic analysis of putative genes involved in the tryptophan-dependent pathway of auxin biosynthesis in rice.	Appl. Biochem. Biotechnol.	172(5)	2480-95	2014	COW1,TDC1,YUCCA7,YUCCA14,_,YUCCA5,AO1,YUCCA1,YUCCA4,YUCCA3,YUCCA12,YUCCA6,_,NIT1,YUCCA9,YUCCA2,AO2,AO3,TYDC,TDC2,YUCCA13,YUCCA10,YUCCA11	OsCOW1, oscow1, OsYUC8, YUC8, NAL7, OsNAL7, OsYUCCA8, YUCCA8, FMO, OsFMO(t), REIN7, YUC8/REIN7,OsTDC, TDC, TDC2, OsTDC1, OsTDC4,OsYUCCA7, OsYUC7, OsYUC5, YUC5, YUC7,OsYUCCA14, OsYUC14,AO, OsAO, OsAAO, AAO,OsYUCCA5, OsYUC5, YUC5,AAO3, OsAAO3, OsAO1, AAO2, OsAAO2,OsYUCCA1, OsYUC1, YUC1,OsYUCCA4, OsYUC4, YUC4, YUCCA6, OsYUCCA6,OsYUCCA3, OsYUC3, YUC3,OsYUCCA12, OsYUC12, YUC12,OsYUCCA6, OsYUC6, YUC6,OsNIT1, NIT1, OsNIT2, NIT2, OsNIT4B, NIT4B,OsNIT1, OsNIT2, NIT2, OsNIT4A, NIT4A,OsYUCCA9, OsYUC9, YUC9,OsYUCCA2, OsYUC2, YUC2,AO, OsAO2,AO, OsAO, AAO, OsAAO, OsAO3, OsAAO1, AAO1,TyDC, OsTyDC, OsTYDC, TDC, OsTDC3, TDC3, OsTDC1,OsTDC2, OsTDC3,OsYUCCA13, OsYUC13,OsYUCCA10, OsYUC10,OsYUCCA11, OsYUC11, YUC11
38119	24505448	Li Y., Yue X., Que Y., Yan X., Ma Z., Talbot N.J., Wang Z.	Characterisation of four LIM protein-encoding genes involved in infection-related development and pathogenicity by the rice blast fungus Magnaporthe oryzae.	PLoS ONE	9(2)	e88246	2014		
38120	24553786	Dubey S., Shri M., Misra P., Lakhwani D., Bag S.K., Asif M.H., Trivedi P.K., Tripathi R.D., Chakrabarty D.	Heavy metals induce oxidative stress and genome-wide modulation in transcriptome of rice root.	Funct. Integr. Genomics	14(2)	401-17	2014		
38121	24466124	Yuan M., Lu Y., Zhu X., Wan H., Shakeel M., Zhan S., Jin B.R., Li J.	Selection and evaluation of potential reference genes for gene expression analysis in the brown planthopper, Nilaparvata lugens (Hemiptera: Delphacidae) using reverse-transcription quantitative PCR.	PLoS ONE	9(1)	e86503	2014		
38122	24686498	Hu Y., Xiong L., Huang W., Cai H., Luo Y., Zhang Y., Lu B.	Anti-inflammatory effect and prostate gene expression profiling of steryl ferulate on experimental rats with non-bacterial prostatitis.	Food Funct	5(6)	1150-9	2014		
38123	24507150	Zhou H., Zhou X., Zeng M., Liao B.H., Liu L., Yang W.T., Wu Y.M., Qiu Q.Y., Wang Y.J.	Effects of combined amendments on heavy metal accumulation in rice (Oryza sativa L.) planted on contaminated paddy soil.	Ecotoxicol. Environ. Saf.	101	226-32	2014		
38124	24393062	Abudayyak M., Ozden S., Alpertunga B., Ozhan G.	Effects of bentazone on lipid peroxidation and antioxidant systems in human erythrocytesin vitro.	Drug Chem Toxicol	37(4)	410-4	2014		
38125	24398893	Ravikumar G., Manimaran P., Voleti S.R., Subrahmanyam D., Sundaram R.M., Bansal K.C., Viraktamath B.C., Balachandran S.M.	Stress-inducible expression of AtDREB1A transcription factor greatly improves drought stress tolerance in transgenic indica rice.	Transgenic Res.	23(3)	421-39	2014		
38126	24668487	Dang X., Thi T.G., Dong G., Wang H., Edzesi W.M., Hong D.	Genetic diversity and association mapping of seed vigor in rice (Oryza sativa L.).	Planta	239(6)	1309-19	2014		
38127	24720210	Tan L.M., Peng P.Q., Li K.L., Li B.Z., Nie S.A., Ge T.D., Tong C.L., Wu J.S.	[Dynamics of the mineralization and transformation of rice photosynthesized carbon in paddy soils--a batch incubation experiment].	Huan Jing Ke Xue	35(1)	233-9	2014		
38128	24464311	Kim S.M., Suh J.P., Lee C.K., Lee J.H., Kim Y.G., Jena K.K.	QTL mapping and development of candidate gene-derived DNA markers associated with seedling cold tolerance in rice (Oryza sativa L.).	Mol. Genet. Genomics	289(3)	333-43	2014	_,CAMTA	OsSTA264, STA264, Duf6, qSCT11 ,OsCAMTA, qSCT1, OsCAMTA4, CAMTA4
38129	24290895	Mirzajani F., Askari H., Hamzelou S., Schober Y., R?mpp A., Ghassempour A., Spengler B.	Proteomics study of silver nanoparticles toxicity on Bacillus thuringiensis.	Ecotoxicol. Environ. Saf.	100	122-30	2014		
38130	24487101	Xu W., Xiong Y., Lai W., Xu Y., Li C., Xie M.	A homogeneous immunosensor for AFB1 detection based on FRET between different-sized quantum dots.	Biosens Bioelectron	56	144-50	2014		
38131	24434156	Qin X., Huang Q., Zhu L., Xiao H., Yao G., Huang W., Zhu R., Hu J., Zhu Y.	Interaction with Cu?? disrupts the RNA binding affinities of RNA recognition motif containing protein.	Biochem. Biophys. Res. Commun.	444(2)	116-20	2014		
38132	24420930	Choi S.C., Lee S., Kim S.R., Lee Y.S., Liu C., Cao X., An G.	Trithorax group protein Oryza sativa Trithorax1 controls flowering time in rice via interaction with early heading date3.	Plant Physiol.	164(3)	1326-37	2014	GHD7,EHD3,SET33	Ghd2, Ghd7, OsGhd7, OsCCT26, OsCMF8, OsI, Ghd7/Hd4, Hd4, EH7-1/Hd4, Ghd7-0a, EH7-1, EH7/Ghd7, EH7, OsEH7, GLW7.1, OsGLW7.1,Ehd3, OsPHD36, PHD36,OsSET33, OsSDG723, SDG723, OsTrx1, Trx1, OsTrx1/SDG723, DLN219, OsDLN219
38133	24454741	Zhou J., Xiao K., Wei B., Wang Z., Tian Y., Tian Y., Song Q.	Bioaccumulation of Cry1Ab protein from an herbivore reduces anti-oxidant enzyme activities in two spider species.	PLoS ONE	9(1)	e84724	2014		
38134	24617541	Nacano L.R., de Freitas R., Barbosa F.	Evaluation of seasonal dietary exposure to arsenic, cadmium and lead in schoolchildren through the analysis of meals served by public schools of ribeir?o preto, Brazil.	J. Toxicol. Environ. Health Part A	77(7)	367-74	2014		
38135	24557889	Du C., Lin J., Yang Y., Liu H., Li C., Zhou Y., Li Y., Tang D., Zhao X., Zhu Y., Liu X.	Molecular cloning, characterization and function analysis of a GDH gene from Sclerotinia sclerotiorum in rice.	Mol. Biol. Rep.	41(6)	3683-93	2014		
38136	24668677	Qiao L.X., Ding X., Wang H.C., Sui J.M., Wang J.S.	Characterization of the beta-1,3-glucanase gene in peanut (Arachis hypogaea L.) by cloning and genetic transformation.	Genet. Mol. Res.	13(1)	1893-904	2014		
38137	24469585	Kumar A., Mirza N., Charan T., Sharma N., Gaur V.S.	Isolation, Characterization and Immunolocalization of a Seed Dominant CaM from Finger Millet (Eleusine coracana L. Gartn.) for Studying Its Functional Role in Differential Accumulation of Calcium in Developing Grains.	Appl. Biochem. Biotechnol.	172(6)	2955-73	2014		
38138	24320692	Duan P., Rao Y., Zeng D., Yang Y., Xu R., Zhang B., Dong G., Qian Q., Li Y.	SMALL GRAIN 1, which encodes a mitogen-activated protein kinase kinase 4, influences grain size in rice.	Plant J.	77(4)	547-57	2014	SMG1	OsMKK4, MKK4, OsMKK4/SMG1, OsMAPKK4, MAPKK4, OsMEK4, MEK4, OsSMG1, SMG1/OsMEK6, OsMEK6, MEK6, OsSTS, STS
38139	24615073	Zhu J.R., Zhou H., Pan Y.B., Lu X.	Genetic variability among the chloroplast genomes of sugarcane (Saccharum spp) and its wild progenitor species Saccharum spontaneum L.	Genet. Mol. Res.	13(AOP)	3037-47	2014		
38140	24469712	Lian L., Wang X., Zhu Y., He W., Cai Q., Xie H., Zhang M., Zhang J.	Physiological and photosynthetic characteristics of indica Hang2 expressing the sugarcane PEPC gene.	Mol. Biol. Rep.	41(4)	2189-97	2014		
38141	24682961	Doroshenk K.A., Tian L., Crofts A.J., Kumamaru T., Okita T.W.	Characterization of RNA binding protein RBP-P reveals a possible role in rice glutelin gene expression and RNA localization.	Plant Mol. Biol.	85(4-5)	381-94	2014	RBP-P	OsRBP-P
38142	24596173	Sun H., Tao J., Liu S., Huang S., Chen S., Xie X., Yoneyama K., Zhang Y., Xu G.	Strigolactones are involved in phosphate- and nitrate-deficiency-induced root development and auxin transport in rice.	J. Exp. Bot.			2014	D3,D27,D10	d3, dwf3, D3/OsMAX2, Os_F0760, SOL1, OsORE9, ORE9, MAX2, OsRFPH2-10, RFPH2-10, OsD3,  OsFBL27, FBL27,d27(d t), dt, dwf23, d27, OsD27,d10(d15,d16), d16, d15, dwf9, d10, OsCCD8b, OsCCD8, CCD8, OsD10
38143	24397480	Zhang H., Yang B., Liu W.Z., Li H., Wang L., Wang B., Deng M., Liang W., Deyholos M.K., Jiang Y.Q.	Identification and characterization of CBL and CIPK gene families in canola (Brassica napus L.).	BMC Plant Biol.	14	8	2014		
38144	24599000	Lim J.H., Yang H.J., Jung K.H., Yoo S.C., Paek N.C.	Quantitative trait locus mapping and candidate gene analysis for plant architecture traits using whole genome re-sequencing in rice.	Mol. Cells	37(2)	149-60	2014		
38145	24531269	Zhang H., Feng X., Jiang C., Li Q., Liu Y., Gu C., Shang L., Li P., Lin Y., Larssen T.	Understanding the paradox of selenium contamination in mercury mining areas: High soil content and low accumulation in rice.	Environ. Pollut.	188	27-36	2014		
38146	24588812	Sanglard L.M., Martins S.C., Detmann K.C., Silva P.E., Lavinsky A.O., Silva M.M., Detmann E., Ara?jo WL., Damatta F.M.	Silicon nutrition alleviates the negative impacts of arsenic on the photosynthetic apparatus of rice leaves: an analysis of the key limitations of photosynthesis.	Physiol Plant			2014		
38147	24654985	Yoshikawa T., Ito M., Sumikura T., Nakayama A., Nishimura T., Kitano H., Yamaguchi I., Koshiba T., Hibara K.I., Nagato Y., Itoh J.I.	The rice FISH BONE gene encodes a tryptophan aminotransferase, which affects pleiotropic auxin-related processes.	Plant J.	78(6)	927-36	2014	FIB,TAR1	fib, OsFIB, OsTAR2, TAR2, TSG1, OsTSG1, OsTAA1, TAA1,OsTAR1, FBL
38148	24701196	Khan S.U., Nuruddin M.F., Ayub T., Shafiq N.	Effects of Different Mineral Admixtures on the Properties of Fresh Concrete.	ScientificWorldJournal	2014	986567	2014		
38149	24688443	Ayub T., Khan S.U., Memon F.A.	Mechanical Characteristics of Hardened Concrete with Different Mineral Admixtures: A Review.	ScientificWorldJournal	2014	875082	2014		
38150	24705135	Yin G., Xin X., Song C., Chen X., Zhang J., Wu S., Li R., Liu X., Lu X.	Activity levels and expression of antioxidant enzymes in the ascorbate-glutathione cycle in artificially aged rice seed.	Plant Physiol. Biochem.	80C	1-9	2014		
38151	24699514	Chen F., Jiang L., Zheng J., Huang R., Wang H., Hong Z., Huang Y.	Identification of differentially expressed proteins and phosphorylated proteins in rice seedlings in response to strigolactone treatment.	PLoS ONE	9(4)	e93947	2014		
38152	24614245	Kim J.S., Park H.M., Chae S., Lee T.H., Hwang D.J., Oh S.D., Park J.S., Song D.G., Pan C.H., Choi D., Kim Y.H., Nahm B.H., Kim Y.K.	A Pepper MSRB2 Gene Confers drought tolerance in Rice through the Protection of Chloroplast-Targeted Genes.	PLoS ONE	9(3)	e90588	2014	MSRB5,MSRB3,RAB16A,SPL42,MSRB1	OsMSR1, MSR1, OsMSRB5,OsMSRB3,Rab16A, rab21, RAB21, OsRab21, OsRAB21, OsRAB-21, OsRab16A, OsLEA29, rab16A, OsRAB16A,PBD, PBGD, HEMC, OsSPL42, OsPBGD, OsPBD,OsMSRB1, OsMSRB1.1, OsMSRB1.2, MSRB1.1
38153	24549238	Xu J., He B., Wu B., Wang B., Wang C., Hu L.	An ionic liquid tolerant cellulase derived from chemically polluted microhabitats and its application in in situ saccharification of rice straw.	Bioresour. Technol.	157C	166-173	2014		
38154	24631338	Jung Y.S., Kim D.H., Hwang J.Y., Yun N.Y., Lee Y.H., Han S.B., Hwang B.Y., Lee M.S., Jeong H.S., Hong J.T.	Anti-inflammatory effect of tricin 4'-O-(threo-beta-guaiacylglyceryl) ether, a novel flavonolignan compound isolated from Njavara on in RAW264.7 cells and in ear mice edema.	Toxicol. Appl. Pharmacol.	277(1)	67-76	2014		
38155	24550897	Budot B.O., Encabo J.R., Ambita I.D., Atienza-Grande GA., Satoh K., Kondoh H., Ulat V.J., Mauleon R., Kikuchi S., Choi I.R.	Suppression of cell wall-related genes associated with stunting of Oryza glaberrima infected with Rice tungro spherical virus.	Front Microbiol	5	26	2014		
38156	24275521	Barik S., Sarkardas S., Singh A., Gautam V., Kumar P., Majee M., Sarkar A.K.	Phylogenetic analysis reveals conservation and diversification of micro RNA166 genes among diverse plant species.	Genomics	103(1)	114-21	2014		
38157	24354293	Musil S., P?tursd?ttir ?H., Raab A., Gunnlaugsd?ttir H., Krupp E., Feldmann J.	Speciation without chromatography using selective hydride generation: inorganic arsenic in rice and samples of marine origin.	Anal. Chem.	86(2)	993-9	2014		
38158	24674921	Kurusu T., Koyano T., Hanamata S., Kubo T., Noguchi Y., Yagi C., Nagata N., Yamamoto T., Ohnishi T., Okazaki Y., Kitahata N., Ando D., Ishikawa M., Wada S., Miyao A., Hirochika H., Shimada H., Makino A., Saito K., Ishida H., Kinoshita T., Kurata N., Kuchitsu K.	OsATG7 is required for autophagy-dependent lipid metabolism in rice postmeiotic anther development.	Autophagy	10(5)	878-88	2014	ATG7	OsATG7, Atg7
38159	24595535	Furukawa K., Ichikawa S., Nigorikawa M., Sonoki T., Ito Y.	Enhanced production of reducing sugars from transgenic rice expressing exo-glucanase under the control of a senescence-inducible promoter.	Transgenic Res.	23(3)	531-7	2014		
38160	24618677	Ali M.P., Huang D., Nachman G., Ahmed N., Begum M.A., Rabbi M.F.	Will climate change affect outbreak patterns of planthoppers in bangladesh?	PLoS ONE	9(3)	e91678	2014		
38161	24033343	Trinh N.N., Huang T.L., Chi W.C., Fu S.F., Chen C.C., Huang H.J.	Chromium stress response effect on signal transduction and expression of signaling genes in rice.	Physiol Plant	150(2)	205-24	2014		
38162	24507130	Clasen B., Leitemperger J., Murussi C., Pretto A., Menezes C., Dalabona F., Marchezan E., Adaime M.B., Zanella R., Loro V.L.	Carbofuran promotes biochemical changes in carp exposed to rice field and laboratory conditions.	Ecotoxicol. Environ. Saf.	101	77-82	2014		
38163	24520898	Ikawa Y., Furutani A., Ochiai H., Tsuge S.	StoS, a hybrid histidine kinase sensor of Xanthomonas oryzae pv. oryzae, is activated by sensing low O2 concentration and is involved in stress tolerance and virulence.	Mol. Plant Microbe Interact.	27(6)	537-45	2014		
38164	24456138	Yuan M., Zhao J., Huang R., Li X., Xiao J., Wang S.	Rice MtN3/saliva/SWEET gene family: Evolution, expression profiling, and sugar transport.	J Integr Plant Biol	56(6)	559-70	2014	SWEET1A,SWEET3A,SWEET7A,SWEET2A,SWEET3B,XA41,SWEET6B,SWEET5,XA13,SWEET12,SWEET6A,SWEET7C,SWEET2B,_,SWEET15,SWEET4,SWEET7B,SWEET13,SWEET7E,SWEET16,SWEET1B	OsSWEET1a, SWEET1a,OsSWEET3a, SWEET3a,OsSWEET7a, SWEET7a,OsSWEET2a, SWEET2a,OsSWEET3b, SWEET3b,OsSWEET14, SWEET14, Os11N3, Os-11N3, 11N3, Xa41(t), xa41, Os11N3/SWEET14, OsSWEET14/Os11N3,OsSWEET6b, SWEET6b,OsSWEET5,xa13, Xa13, Os8N3, Os-8N3, 8N3, OsSWEET11, SWEET11, OsSWEET11/Xa13, Xa13/Os8N3/SWEET11, Os8N3/Xa13, OsSWEET11/Os8N3, OsSWEET11a, SWEET11a,OsSWEET12,OsSWEET6a, SWEET6a,OsSWEET7c, SWEET7c,OsSWEET2b, SWEET2b,MtN3/saliva/SWEET gene family paralog,OsSWEET15,OsSWEET4,OsSWEET7b, SWEET7b,OsSWEET13, Xa25(t), Xa25, OsMtN3, Xa25/SWEET13, OsSWEET13/XA25,OsSWEET7e, SWEET7e,OsSWEET16,OsSWEET1b, SWEET1b
38165	24384682	Abe S.K., Inoue M., Sawada N., Iwasaki M., Ishihara J., Sasazuki S., Shimazu T., Yamaji T., Shibuya K., Tsugane S.	Rice, bread, noodle and cereal intake and colorectal cancer in Japanese men and women: the Japan Public Health Center-based prospective Study (JPHC Study).	Br. J. Cancer	110(5)	1316-21	2014		
38166	24389480	Choi J.S., Jeon M.H., Moon W.S., Moon J.N., Cheon E.J., Kim J.W., Jung S.K., Ji Y.H., Son S.W., Kim M.R.	In vivo hair growth-promoting effect of rice bran extract prepared by supercritical carbon dioxide fluid.	Biol. Pharm. Bull.	37(1)	44-53	2014		
38167	24533099	Yu H., Ji R., Ye W., Chen H., Lai W., Fu Q., Lou Y.	Transcriptome analysis of fat bodies from two brown planthopper (Nilaparvata lugens) populations with different virulence levels in rice.	PLoS ONE	9(2)	e88528	2014		
38168	24433542	Waters M.T., Scaffidi A., Sun Y.K., Flematti G.R., Smith S.M.	The karrikin response system of Arabidopsis.	Plant J.	79(4)	623-31	2014		
38169	24586663	Wang P., Cheng T., Wu S., Zhao F., Wang G., Yang L., Lu M., Chen J., Shi J.	Phylogeny and molecular evolution analysis of PIN-FORMED 1 in angiosperm.	PLoS ONE	9(2)	e89289	2014		
38170	24515831	Maruyama K., Urano K., Yoshiwara K., Morishita Y., Sakurai N., Suzuki H., Kojima M., Sakakibara H., Shibata D., Saito K., Shinozaki K., Yamaguchi-Shinozaki K.	Integrated analysis of the effects of cold and dehydration on rice metabolites, phytohormones, and gene transcripts.	Plant Physiol.	164(4)	1759-71	2014	_,CYP735A4	CYP735A3,OsCYP735A4
38171	24482761	Bahar O., Pruitt R., Luu D.D., Schwessinger B., Daudi A., Liu F., Ruan R., Fontaine-Bodin L., Koebnik R., Ronald P.	The Xanthomonas ax21 protein is processed by the general secretory system and is secreted in association with outer membrane vesicles.	PeerJ	2	e242	2014		
38172	24642810	Streb S., Zeeman S.C.	Replacement of the Endogenous Starch Debranching Enzymes ISA1 and ISA2 of Arabidopsis with the Rice Orthologs Reveals a Degree of Functional Conservation during Starch Synthesis.	PLoS ONE	9(3)	e92174	2014		
38173	24504629	Zhang W., Dong Y., Yang L., Ma B., Ma R., Huang F., Wang C., Hu H., Li C., Yan C., Chen J.	Small brown planthopper resistance loci in wild rice (Oryza officinalis).	Mol. Genet. Genomics	289(3)	373-82	2014		
38174	24595621	Tan J., He S., Yan S., Li Y., Li H., Zhang H., Zhao L., Li L.	Exogenous EDDS modifies copper-induced various toxic responses in rice.	Protoplasma	251(5)	1213-21	2014	SULTR2;2,HMA9,MTI1A	OsSultr2;2, OsSul2;2, OsaSULTR2;1, SULTR2;1, OsSULTR2;1,OsHMA9 ,oshma9-1, oshma9-2, HMA9, OsHMP33, HMP33,MT1a, OsMT1a, OsMT1e, OsMT-I-1a, MT-I-1a, OsMT1e-P, MTa, rgMT, OsMT-1, rgMT-1
38175	24575721	Lee K.W., Chen P.W., Yu S.M.	Metabolic adaptation to sugar/O2 deficiency for anaerobic germination and seedling growth in rice.	Plant Cell Environ.			2014		
38176	24608025	Chen L., Tong Q., Ren F., Zhu G.	Pasting and rheological properties of rice starch as affected by pullulan.	Int. J. Biol. Macromol.	66	325-31	2014		
38177	24491293	Kaur B., Oberoi H.S., Chadha B.S.	Enhanced cellulase producing mutants developed from heterokaryotic Aspergillus strain.	Bioresour. Technol.	156C	100-107	2014		
38178	24456533	Peng C., Wang Y., Liu F., Ren Y., Zhou K., Lv J., Zheng M., Zhao S., Zhang L., Wang C., Jiang L., Zhang X., Guo X., Bao Y., Wan J.	FLOURY ENDOSPERM6 encodes a CBM48 domain-containing protein involved in compound granule formation and starch synthesis in rice endosperm.	Plant J.	77(6)	917-30	2014	FLO6,PHS8	OsSIP4, SIP4, OsFLO6, OsSFq3, SFq3,ISA1, OsISA1, ISA, OsISA, PHS8/ISA1, OsPHS8, ISA I, OsISA I, ISAI, OsISAI
38179	24463428	Sato T., Miyanoiri Y., Takeda M., Naoe Y., Mitani R., Hirano K., Takehara S., Kainosho M., Matsuoka M., Ueguchi-Tanaka M., Kato H.	Expression and purification of a GRAS domain of SLR1, the rice DELLA protein.	Protein Expr. Purif.	95	248-58	2014		
38180	24291007	Song X.S., Li H.P., Zhang J.B., Song B., Huang T., Du X.M., Gong A.D., Liu Y.K., Feng Y.N., Agboola R.S., Liao Y.C.	trehalose 6-phosphate phosphatase is required for development, virulence and mycotoxin biosynthesis apart from trehalose biosynthesis in Fusarium graminearum.	Fungal Genet. Biol.	63	24-41	2014		
38181	24444413	Salas-Leiva DE., Meerow A.W., Francisco-Ortega J., Calonje M., Griffith M.P., Stevenson D.W., Nakamura K.	Conserved genetic regions across angiosperms as tools to develop single-copy nuclear markers in gymnosperms: an example using cycads.	Mol Ecol Resour	14(4)	831-45	2014		
38182	24472345	Zhang X., Xu C., Zhang C., Liu Y., Xie Y., Liu X.	Established a new double antibodies sandwich enzyme-linked immunosorbent assay for detecting Bacillus thuringiensis (Bt) Cry1Ab toxin based single-chain variable fragments from a na?ve mouse phage displayed library.	Toxicon	81	13-22	2014		
38183	24498057	Cai Y., Vega-S?nchez ME., Park C.H., Bellizzi M., Guo Z., Wang G.L.	RBS1, an RNA binding protein, interacts with Spin1 and is involved in flowering time control in rice.	PLoS ONE	9(1)	e87258	2014	HD3A,SPL11,SPIN1,_	Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,spl11, spl11*, OsPUB11, PUB11,  OsPUB11/SPL11, PUB11/SPL11,Spin1, OsSPIN1, OsKH16, KH16,RBS1, Rbs1
38184	24650428	Mar T., Liu W., Wang X.	Proteomic analysis of interaction between P7-1 of Southern rice black-streaked dwarf virus and the insect vector reveals diverse insect proteins involved in successful transmission.	J Proteomics	102C	83-97	2014		
38185	24734090	Sadeghi N., Oveisi M.R., Jannat B., Hajimahmoodi M., Behfar A., Behzad M., Norouzi N., Oveisi M., Jannat B.	Simultaneous Measurement of Zinc, Copper, Lead and Cadmium in Baby Weaning Food and Powder Milk by DPASV.	Iran J Pharm Res	13(1)	345-9	2014		
38186	24489758	Craig S.M., Reagon M., Resnick L.E., Caicedo A.L.	Allele distributions at hybrid incompatibility loci facilitate the potential for gene flow between cultivated and weedy rice in the US.	PLoS ONE	9(1)	e86647	2014	S5,SAF,DPL1,SAM,DPL2	S5-3, S5-4,SaF, OsFbox019, OsFbox19, Os_F0070,  OsFBD1, FBD1,,SaM ,
38187	24504074	Zain N.A., Ismail M.R., Mahmood M., Puteh A., Ibrahim M.H.	Alleviation of water stress effects on MR220 rice by application of periodical water stress and potassium fertilization.	Molecules	19(2)	1795-819	2014		
38188	24616563	Samanta A., Datta A.K., Datta S.	Study on Folate Binding Domain of Dihydrofolate Reductase in Different Plant species and Human beings.	Bioinformation	10(2)	101-4	2014		
38189	24466268	Mishra A.K., Muthamilarasan M., Khan Y., Parida S.K., Prasad M.	Genome-wide investigation and expression analyses of WD40 protein family in the model plant foxtail millet (Setaria italica L.).	PLoS ONE	9(1)	e86852	2014		
38190	24392772	Candow D.G., Zello G.A., Ling B., Farthing J.P., Chilibeck P.D., McLeod K., Harris J., Johnson S.	Comparison of creatine supplementation before versus after supervised resistance training in healthy older adults.	Res Sports Med	22(1)	61-74	2014		
38191	24372757	Petrik D.L., Karlen S.D., Cass C.L., Padmakshan D., Lu F., Liu S., Le Bris P., Antelme S., Santoro N., Wilkerson C.G., Sibout R., Lapierre C., Ralph J., Sedbrook J.C.	p-coumaroyl-CoA:monolignol transferase (PMT) acts specifically in the lignin biosynthetic pathway in Brachypodium distachyon.	Plant J.	77(5)	713-26	2014		
38192	24578651	Rungrodnimitchai S.	Rapid preparation of biosorbents with high ion exchange capacity from rice straw and bagasse for removal of heavy metals.	ScientificWorldJournal	2014	634837	2014		
38193	24492537	Ji Y., Tu P., Wang K., Gao F., Yang W., Zhu Y., Li S.	Defining reference genes for quantitative real-time PCR analysis of anther development in rice.	Acta Biochim. Biophys. Sin. (Shanghai)	46(4)	305-12	2014	_,GAPC2,_,_	OsRH2, RH2, eIF4A-3,GAPDH, OsGAPDH, OsGapC2,OsPP13, PPP6 ,UPF3
38194	24646527	Chao J., Jin J., Wang D., Han R., Zhu R., Zhu Y., Li S.	Cytological and Transcriptional Dynamics Analysis of Host Plant Revealed Stage-Specific Biological Processes Related to Compatible Rice-Ustilaginoidea virens Interaction.	PLoS ONE	9(3)	e91391	2014		
38195	24635058	Lu G., Wu F.Q., Wu W., Wang H.J., Zheng X.M., Zhang Y., Chen X., Zhou K., Jin M., Cheng Z., Li X., Jiang L., Wang H., Wan J.	Rice ltg1 is involved in adaptive growth and fitness under low ambient temperature.	Plant J.	78(3)	468-80	2014	HBD2	OsCKI1, CKI, hbd2, CKI1, LTG1, OsCKI1/LTRPK1, LTRPK1, OsLTRPK1, LSES1, OsLSES1
38196	24493253	Li Y., Peng Y., Hallerman E.M., Wu K.	Biosafety management and commercial use of genetically modified crops in China.	Plant Cell Rep.	33(4)	565-73	2014		
38197	24663342	Mochizuki S., Jikumaru Y., Nakamura H., Koiwai H., Sasaki K., Kamiya Y., Ichikawa H., Minami E., Nishizawa Y.	Ubiquitin ligase EL5 maintains the viability of root meristems by influencing cytokinin-mediated nitrogen effects in rice.	J. Exp. Bot.	65(9)	2307-18	2014		
38198	24460219	Han C., Yang P., Sakata K., Komatsu S.	Quantitative Proteomics Reveals the Role of Protein Phosphorylation in Rice Embryos during Early Stages of Germination.	J. Proteome Res.	13(3)	1766-82	2014		
38199	24420860	Guo L., Guo C., Li M., Wang W., Luo C., Zhang Y., Chen L.	Suppression of expression of the putative receptor-like kinase gene NRRB enhances resistance to bacterial leaf streak in rice.	Mol. Biol. Rep.	41(4)	2177-87	2014		
38200	24603050	Basu S., Roychoudhury A., Sengupta D.N.	Deciphering the Role of various cis-acting regulatory elements in controlling SamDC gene expression in Rice.	Plant Signal Behav	9(3)		2014		
38272	24641700	Urayama S.I., Fukuhara T., Moriyama H., Toh-E A., Kawamoto S., Urayama S., Fukuhara T., Moriyama H.	Heterologous expression of a gene of Magnaporthe oryzae chrysovirus 1 strain A disrupts growth of the human pathogenic fungus Cryptococcus neoformans.	Microbiol. Immunol.	58(5)	294-302	2014		
38273	24442786	Zhang C., Zhang X., Shen S.	Proteome analysis for antifungal effects of Bacillus subtilis KB-1122 on Magnaporthe grisea P131.	World J. Microbiol. Biotechnol.	30(6)	1763-74	2014		
38274	24681716	Xu X., Lv Q., Shang J., Pang Z., Zhou Z., Wang J., Jiang G., Tao Y., Xu Q., Li X., Zhao X., Li S., Xu J., Zhu L.	Excavation of Pid3 Orthologs with Differential Resistance Spectra to Magnaporthe oryzae in Rice Resource.	PLoS ONE	9(3)	e93275	2014		
38275	24556665	Chen C., Chen H., Lin Y.S., Shen J.B., Shan J.X., Qi P., Shi M., Zhu M.Z., Huang X.H., Feng Q., Han B., Jiang L., Gao J.P., Lin H.X.	A two-locus interaction causes interspecific hybrid weakness in rice.	Nat Commun	5	3357	2014	HWI1,RLCK314,HWI2	25L1,OsRLCK314, 25L2,Hwi2, OsHWI2, OsSub9, SUB9
38276	24666983	V?ry AA., Nieves-Cordones M., Daly M., Khan I., Fizames C., Sentenac H.	Molecular biology of K(+) transport across the plant cell membrane: What do we learn from comparison between plant species?	J. Plant Physiol.	171(9)	748-69	2014		
38277	24648012	Wan P.J., Jia S., Li N., Fan J.M., Li G.Q.	A Halloween gene shadow is a potential target for RNA-interference-based pest management in the small brown planthopper Laodelphax striatellus.	Pest Manag. Sci.	71(2)	199-206	2014		
38278	24450747	Schmelz E.A., Huffaker A., Sims J.W., Christensen S.A., Lu X., Okada K., Peters R.J.	Biosynthesis, elicitation and roles of monocot terpenoid phytoalexins.	Plant J.	79(4)	659-678	2014		
38279	24535191	Song Y., Zhang H., Chen C., Wang G., Zhuang K., Cui J., Shen Z.	Proteomic analysis of copper-binding proteins in excess copper-stressed rice roots by immobilized metal affinity chromatography and two-dimensional electrophoresis.	Biometals	27(2)	265-76	2014		
38280	24395199	Li X., Han B., Xu M., Han L., Zhao Y., Liu Z., Dong H., Zhang C.	Plant growth enhancement and associated physiological responses are coregulated by ethylene and gibberellin in response to harpin protein Hpa1.	Planta	239(4)	831-46	2014		
38281	24624317	Okamoto K., Uchii A., Kanawaku R., Yanase H.	Bioconversion of xylose, hexoses and biomass to ethanol by a new isolate of the white rot basidiomycete Trametes versicolor.	Springerplus	3	121	2014		
38282	24548060	van Veen H., Akman M., Jamar D.C., Vreugdenhil D., Kooiker M., van Tienderen P., Voesenek L.A., Schranz M.E., Sasidharan R.	Group VII Ethylene Response Factor diversification and regulation in four species from flood-prone environments.	Plant Cell Environ.	37(10)	2421-32	2014		
38283	24649705	Bai J., Sun X., Zhang C., Gong C., Hu J., Zhang J.	Mechanism and kinetics study on the ozonolysis reaction of 2,3,7,8-TCDD in the atmosphere.	J Environ Sci (China)	26(1)	181-8	2014		
38284	24532719	Xie Y., Wu G., Tang J., Luo R., Patterson J., Liu S., Huang W., He G., Gu S., Li S., Zhou X., Lam T.W., Li Y., Xu X., Wong G.K., Wang J.	SOAPdenovo-Trans: de novo transcriptome assembly with short RNA-Seq reads.	Bioinformatics	30(12)	1660-6	2014		
38285	24520314	Giordano A., Cogan N.O., Kaur S., Drayton M., Mouradov A., Panter S., Schrauf G.E., Mason J.G., Spangenberg G.C.	Gene discovery and molecular marker development, based on high-throughput transcript sequencing of Paspalum dilatatum Poir.	PLoS ONE	9(2)	e85050	2014		
38286	24454828	Li L., Wang J., Zhang Z., Wang Y., Liu M., Jiang H., Chai R., Mao X., Qiu H., Liu F., Sun G.	MoPEX19, which is essential for maintenance of peroxisomal structure and woronin bodies, is required for metabolism and development in the rice blast fungus.	PLoS ONE	9(1)	e85252	2014		
38287	24503158	Chang C.W., Williams S.J., Cou?ago RM., Kobe B.	Structural Basis of Interaction of Bipartite Nuclear Localization Signal from Agrobacterium VirD2 with Rice Importin-alpha	Mol Plant	7(6)	1061-4	2014		
38288	24688383	Shivanna G.B., Venkateswaran G.	Phytase Production by Aspergillus niger CFR 335 and Aspergillus ficuum SGA 01 through Submerged and Solid-State Fermentation.	ScientificWorldJournal	2014	392615	2014		
38289	24656338	Kravchik M., Damodharan S., Stav R., Arazi T.	Generation and characterization of a tomato DCL3-silencing mutant.	Plant Sci.	221-222	81-9	2014		
38290	24502996	Kosolsaksakul P., Farmer J.G., Oliver I.W., Graham M.C.	Geochemical associations and availability of cadmium (Cd) in a paddy field system, northwestern Thailand.	Environ. Pollut.	187	153-61	2014		
38291	24570169	Cenci A., Guignon V., Roux N., Rouard M.	Genomic analysis of NAC transcription factors in banana (Musa acuminata) and definition of NAC orthologous groups for monocots and dicots.	Plant Mol. Biol.	85(1-2)	63-80	2014		
38292	24548184	Xia Y., Wang Y., Zhang B., Xu G., Ai L.	Effect of cultural conditions on antrodin C production by basidiomycete Antrodia camphorata in solid state fermentation.	Biotechnol. Appl. Biochem.	61(6)	724-32	2014		
38293	24676962	Cabanos C., Kato N., Amari Y., Fujiwara K., Ohno T., Shimizu K., Goto T., Shimada M., Kuroda M., Masuda T., Takaiwa F., Utsumi S., Nagaoka S., Maruyama N.	Development of a novel transgenic rice with hypocholesterolemic activity via high-level accumulation of the alpha' subunit of soybean beta-conglycinin.	Transgenic Res.	23(4)	609-20	2014		
38294	24613105	Kawauchi M., Iwashita K.	Functional analysis of histone deacetylase and its role in stress response, drug resistance and solid-state cultivation in Aspergillus oryzae.	J. Biosci. Bioeng.	118(2)	172-6	2014		
38295	24661044	Feldman T., Mato A.R., Chow K.F., Protomastro E.A., Yannotti K.M., Bhattacharyya P., Yang X., Donato M.L., Rowley S.D., Carini C., Valentinetti M., Smith J., Gadaleta G., Bejot C., Stives S., Timberg M., Kdiry S., Pecora A.L., Beaven A.W., Goy A.	Addition of lenalidomide to rituximab, ifosfamide, carboplatin, etoposide (RICER) in first-relapse/primary refractory diffuse large B-cell lymphoma.	Br. J. Haematol.	166(1)	77-83	2014		
38296	24548197	Yasutomi M., Kosaka T., Kawakita A., Hayashi H., Okazaki S., Murai H., Miyagawa K., Mayumi M., Ohshima Y.	Rice protein-induced enterocolitis syndrome with transient specific IgE to boiled rice but not to retort-processed rice.	Pediatr Int	56(1)	110-2	2014		
38297	24502317	Amaya-Gonz?lez S., de-Los-Santos-?lvarez N., Miranda-Ordieres AJ., Lobo-Casta??n MJ.	Aptamer binding to celiac disease-triggering hydrophobic proteins: a sensitive gluten detection approach.	Anal. Chem.	86(5)	2733-9	2014		
38298	24632440	Kim H.J., Han J.H., Kim K.S., Lee Y.H.	Comparative functional analysis of the velvet gene family reveals unique roles in fungal development and pathogenicity in Magnaporthe oryzae.	Fungal Genet. Biol.	66	33-43	2014		
38299	24515640	Liu S., Liang Q.M., Zhou W.W., Jiang Y.D., Zhu Q.Z., Yu H., Zhang C.X., Gurr G.M., Zhu Z.R.	RNA interference of NADPH-cytochrome P450 reductase of the rice brown planthopper, Nilaparvata lugens, increases susceptibility to insecticides.	Pest Manag. Sci.			2014		
38300	24407603	Zhang J.Y., Qu S.C., Qiao Y.S., Zhang Z., Guo Z.R.	Overexpression of the Malus hupehensis MhNPR1 gene increased tolerance to salt and osmotic stress in transgenic tobacco.	Mol. Biol. Rep.	41(3)	1553-61	2014		
38301	24613924	Peng H., Zheng Y., Chen M., Wang Y., Xiao Y., Gao Y.	A starch-binding domain identified in alpha-amylase (AmyP) represents a new family of carbohydrate-binding modules that contribute to enzymatic hydrolysis of soluble starch.	FEBS Lett.	588(7)	1161-7	2014		
38302	24423401	Ji Z., Zakria M., Zou L., Xiong L., Zheng L., Ji G., Chen G.	Genetic Diversity of Transcriptional Activator-like Effectors genes in Chinese Isolates of Xanthomonas oryzae pv. oryzicola.	Phytopathology	104(7)	672-82	2014		
38303	24667993	Wang H., Liu R., Wang J., Wang P., Shen Y., Liu G.	The Arabidopsis kinesin gene AtKin-1 plays a role in the nuclear division process during megagametogenesis.	Plant Cell Rep.	33(5)	819-28	2014		
38304	24423072	Inokuma K., Hasunuma T., Kondo A.	Efficient yeast cell-surface display of exo- and endo-cellulase using the SED1 anchoring region and its original promoter.	Biotechnol Biofuels	7(1)	8	2014		
38305	24548461	Abe M., Yuki Y., Kurokawa S., Mejima M., Kuroda M., Park E.J., Scheller J., Nakanishi U., Kiyono H.	A rice-based soluble form of a murine TNF-specific llama variable domain of heavy-chain antibody suppresses collagen-induced arthritis in mice.	J. Biotechnol.	175	45-52	2014		
38306	24720198	Song L.F., Wang Y., Wu J.S., LI Y., Li Y.Y., Meng C., Li H., Zhang M.Y.	[Impact of rice agriculture on nitrogen and phosphorus exports in streams in hilly red soil earth region of central subtropics].	Huan Jing Ke Xue	35(1)	150-6	2014		
38307	24520158	Zhang C., Gschwend A.R., Ouyang Y., Long M.	Evolution of gene structural complexity: An alternative-splicing based model accounts for intron-containing retrogenes.	Plant Physiol.	165(1)	412-23	2014		
38308	24651725	Xu S., Zhou Z., Lu H., Luo X., Lan Y.	Improved algorithms for the classification of rough rice using a bionic electronic nose based on PCA and the Wilks distribution.	Sensors (Basel)	14(3)	5486-501	2014		
38309	24548063	Yang F., Tian F., Li X., Fan S., Chen H., Wu M., Yang C.H., He C.	The degenerate EAL-GGDEF domain protein Filp functions as a cyclic di-GMP receptor and specifically interacts with the PilZ-domain protein PXO_02715 to regulate virulence in Xanthomonas oryzae pv. oryzae.	Mol. Plant Microbe Interact.	27(6)	578-89	2014		
38310	24470637	Denanc? N., Szurek B., No?l LD.	Emerging functions of nodulin-like proteins in non-nodulating plant species.	Plant Cell Physiol.	55(3)	469-74	2014	SWEET6A,ENODL9,SWEET4,SWEET2A,SWEET7C,NIP3;2,SWEET5,ENODL22,SWEET6B,MFS5,SWEET7B,MFS8,SWEET3A,ENODL19,SWEET7E,ENODL11,SWEET7A,UMAMIT5,XA41,UMAMIT3,SWEET15,UMAMIT1,XA13,AM25,SWEET7D,ENODL16,ENODL20,SWEET13,ENODL14,SNDP7,UMAMIT9,SWEET12,SNDP9,ENODL6,NL2,ENODL15,UMAMIT14,MFS4,MFS1,MFS6,ENODL8,UMAMIT8,ENODL4,ENODL7,SNDP1,SWEET1A,SWEET16,SWEET2B,SNDP6,SWEET3B,SWEET1B,NL1,ENODL2,UMAMIT6,UMAMIT10,UMAMIT7,UMAMIT12,ENODL12,ENODL10,ENODL13,ENODL1,ENODL21,ENODL24,MFS3,MFS2,MFS7,SNDP4,UMAMIT11,SNDP10,UMAMIT4,NRFG3,NIP4;1,SNDP2,ENODL23,NIP1;3,ASA,NIP1;2,UMAMIT2,LSI1,ENODL5,SNDP3,LSI6,NIP1;1,NIP3;3,ENODL3,SNDP5,UMAMIT13,UMAMIT15,SNDP8,ENODL18	OsSWEET6a, SWEET6a,OsENODL9,OsSWEET4,OsSWEET2a, SWEET2a,OsSWEET7c, SWEET7c,OsNIP3;2, NIP3-2, OsNIP3.2, NIP3.2,OsSWEET5,OsENODL22,OsSWEET6b, SWEET6b,OsMFS5,OsSWEET7b, SWEET7b,OsMFS8,OsSWEET3a, SWEET3a,OsENODL19,OsSWEET7e, SWEET7e,OsENODL11,OsSWEET7a, SWEET7a,OsUMAMIT5,OsSWEET14, SWEET14, Os11N3, Os-11N3, 11N3, Xa41(t), xa41, Os11N3/SWEET14, OsSWEET14/Os11N3,OsUMAMIT3,OsSWEET15,OsUMAMIT1,xa13, Xa13, Os8N3, Os-8N3, 8N3, OsSWEET11, SWEET11, OsSWEET11/Xa13, Xa13/Os8N3/SWEET11, Os8N3/Xa13, OsSWEET11/Os8N3, OsSWEET11a, SWEET11a,AM25, OsNIP1;4, NIP1-4, OsNIP1.4, NIP1.4,OsSWEET7d, SWEET7d,OsENODL16,OsENODL20,OsSWEET13, Xa25(t), Xa25, OsMtN3, Xa25/SWEET13, OsSWEET13/XA25,OsENODL14,OsSNDP7, OsSec14-20, Sec14-20,OsUMAMIT9,OsSWEET12,OsSNDP9, OsSec14-21, Sec14-21,OsENODL6, OsELA2, ELA2, OsEnS-24,OsVTL5, VTL5, OsNL2,OsENODL15,OsUMAMIT14,OsMFS4,OsMFS1,OsMFS6,OsENODL8,OsUMAMIT8,OsENODL4,OsENODL7,OsSNDP1, OsSec14-24, Sec14-24,OsSWEET1a, SWEET1a,OsSWEET16,OsSWEET2b, SWEET2b,OsSNDP6, OsSec14-16, Sec14-16,OsSWEET3b, SWEET3b,OsSWEET1b, SWEET1b,OsVTL2, VTL2, OsNL1,OsENODL2,OsUMAMIT6,OsUMAMIT10,OsUMAMIT7,OsUMAMIT12,OsENODL12,OsENODL10,OsENODL13,OsENODL1, OsELA1, ELA1,OsENODL21,OsENODL24,OsMFS3,OsMFS2,OsMFS7,OsSNDP4, OsSec14-5, Sec14-5,OsUMAMIT11,OsSNDP10, OsSec14-23, Sec14-23,OsUMAMIT4,OsENODL17, ENODL17, OsNRFG3,OsNIP4;1, NIP4-1, OsNIP4.1, NIP4.1,OsSNDP2, OsSec14-8, Sec14-8,OsENODL23,OsNIP1;3, NIP1-3, OsNIP1.3, NIP1.3,OsNIP3;1, NIP3;1, NIP3-1, OsNIP3.1, NIP3.1, OsASA,OsNIP1;2, NIP1-2, OsNIP1.2, NIP1.2,OsUMAMIT2,lsi1, NIP2-1, OsNIP2;1, NIP2;1, OsLsi1, lsi(t), OsNIP2.1/OsLsi1/OsSIIT1, OsNIP2.1, NIP2.1,OsENODL5,OsSNDP3, OsSec14-6, Sec14-6,Lsi6, OsNIP2;2, NIP2-2, OsLsi6, OsNIP2.2/OsLsi6, OsNIP2.2, NIP2.2,OsNIP1;1, NIP1-1, rMIP1, MIP1, OsNIP1.1, NIP1.1,OsNIP3;3, NIP3-3, OsNIP3.3, NIP3.3,OsENODL3,OsSNDP5, OsSec14-2, Sec14-2,OsUMAMIT13,OsUMAMIT15,OsSNDP8, OsSec14-9, Sec14-9,OsENODL18, OsELA3, ELA3, EN20, OsEN20
38311	24638148	Takaiwa F., Yang L.	Development of a rice-based peptide vaccine for Japanese cedar and cypress pollen allergies.	Transgenic Res.	23(4)	573-84	2014		
38312	24682189	Senadheera S.P., Ekanayake S., Wanigatunge C.	Antioxidant potential of green leafy porridges.	Ceylon Med J	59(1)	4-8	2014		
38313	24669667	Das J., Ramesh K.V., Maithri U., Mutangana D., Suresh C.K.	Response of aerobic rice to Piriformospora indica.	Indian J. Exp. Biol.	52(3)	237-51	2014		
38314	24291601	Agrawal C., Sen S., Singh S., Rai S., Singh P.K., Singh V.K., Rai L.C.	Comparative proteomics reveals association of early accumulated proteins in conferring butachlor tolerance in three N(2)-fixing Anabaena spp.	J Proteomics	96	271-90	2014		
38315	24520386	Yang H., Li J., Yang J., Wang H., Zou J., He J.	Effects of nitrogen application rate and leaf age on the distribution pattern of leaf SPAD readings in the rice canopy.	PLoS ONE	9(2)	e88421	2014		
38316	24643567	Kanzaki H., Yoshida K., Saitoh H., Tamiru M., Terauchi R.	Protoplast Cell Death Assay to Study Magnaporthe oryzae AVR Gene Function in Rice.	Methods Mol. Biol.	1127	269-75	2014		
38317	24572275	Song E.S., Kim S.Y., Noh T.H., Cho H., Chae S.C., Lee B.M.	PCR-based assay for rapid and specific detection of the new Xanthomonas oryzae pv. oryzae K3a race using an AFLP-derived marker.	J. Microbiol. Biotechnol.	24(6)	732-9	2014		
38318	24482523	Huang S.L., Chen H., Hu A., Tuan N.N., Yu C.P.	Draft Genome Sequence of Pseudomonas nitroreducens Strain TX1, Which Degrades Nonionic Surfactants and Estrogen-Like Alkylphenols.	Genome Announc	2(1)	e01262-13	2014		
38319	24457353	Cheng Z., Lin J., Lin T., Xu M., Huang Z., Yang Z., Huang X., Zheng J.	Genome-wide analysis of radiation-induced mutations in rice (Oryza sativa L. ssp. indica).	Mol Biosyst	10(4)	795-805	2014		
38320	24487649	Majhi B.B., Shah J.M., Veluthambi K.	A novel T-DNA integration in rice involving two interchromosomal translocations.	Plant Cell Rep.	33(6)	929-44	2014		
38321	24704987	Ayadi M., Mieulet D., Fabre D., Verdeil J.L., Vernet A., Guiderdoni E., Masmoudi K.	Functional analysis of the durum wheat gene TdPIP2;1 and its promoter region in response to abiotic stress in rice.	Plant Physiol. Biochem.	79	98-108	2014		
38322	24602153	de Lange O., Binder A., Lahaye T.	From dead leaf, to new life: TAL effectors as tools for synthetic biology.	Plant J.	78(5)	753-71	2014		
38373	24032447	Dang F., Wang Y., She J., Lei Y., Liu Z., Eulgem T., Lai Y., Lin J., Yu L., Lei D., Guan D., Li X., Yuan Q., He S.	Overexpression of CaWRKY27, a subgroup IIe WRKY transcription factor of Capsicum annuum, positively regulates tobacco resistance to Ralstonia solanacearum infection.	Physiol Plant	150(3)	397-411	2014		
38374	24457348	Karthikeyan S., Sekaran G.	In situ generation of a hydroxyl radical by nanoporous activated carbon derived from rice husk for environmental applications: kinetic and thermodynamic constants.	Phys Chem Chem Phys	16(9)	3924-33	2014		
38375	24413664	Duitama J., Quintero J.C., Cruz D.F., Quintero C., Hubmann G., Foulqui?-Moreno MR., Verstrepen K.J., Thevelein J.M., Tohme J.	An integrated framework for discovery and genotyping of genomic variants from high-throughput sequencing experiments.	Nucleic Acids Res.	42(6)	e44	2014		
38376	24554438	Makino T., Shiraki Y., Mizukami H.	Interaction of gypsum and the rhizome of Anemarrhena asphodeloides plays an important role in anti-allergic effects of byakkokakeishito in mice.	J Nat Med	68(3)	505-12	2014		
38377	24518221	Jo K., Kwon H.B., Kim S.	Time-series RNA-seq analysis package (TRAP) and its application to the analysis of rice, Oryza sativa L. ssp. Japonica, upon drought stress.	Methods	67(3)	364-72	2014		
38378	24584576	Babu B.K., Meena V., Agarwal V., Agrawal P.K.	Population structure and genetic diversity analysis of Indian and exotic rice (Oryza sativa L.) accessions using SSR markers.	Mol. Biol. Rep.	41(7)	4329-39	2014		
38379	24656332	Al Atalah B., Smagghe G., Van Damme EJ.	Orysata, a jacalin-related lectin from rice, could protect plants against biting-chewing and piercing-sucking insects.	Plant Sci.	221-222	21-8	2014	SALT	salT*(sal1), SalT1*, sal1, Sal1, SALT, ML, SalT, OsSalT, OsJRL, JRL, Osl43, OsL43, OsMBL1, MBL1, OsJRL01, JRL01, OsJRL1, JRL1
38380	24399024	Dubey S.C., Tripathi A., Upadhyay B.K., Deka U.K.	Diversity of Rhizoctonia solani associated with pulse crops in different agro-ecological regions of India.	World J. Microbiol. Biotechnol.	30(6)	1699-715	2014		
38381	24218206	Deborde C., Jacob D.	MeRy-B, a metabolomic database and knowledge base for exploring plant primary metabolism.	Methods Mol. Biol.	1083	3-16	2014		
38382	24453041	Wen F., Zhu H., Li P., Jiang M., Mao W., Ong C., Chu Z.	Genome-Wide Evolutionary Characterization and Expression Analyses of WRKY Family Genes in Brachypodium distachyon.	DNA Res.	21(3)	327-39	2014		
38383	24418273	Miller-Cushon EK., Montoro C., Ipharraguerre I.R., Bach A.	Dietary preference in dairy calves for feed ingredients high in energy and protein.	J. Dairy Sci.	97(3)	1634-44	2014		
38384	24415207	Hwang S.G., Hwang J.G., Kim D.S., Jang C.S.	Genome-wide DNA polymorphism and transcriptome analysis of an early-maturing rice mutant.	Genetica	142(1)	73-85	2014	_	
38385	24659814	House M.A., Griswold C.K., Lukens L.N.	Evidence for Selection on Gene Expression in Cultivated Rice (Oryza sativa).	Mol. Biol. Evol.	31(6)	1514-25	2014		
38386	24727355	Dai L., Wu B., Tan F., He M., Wang W., Qin H., Tang X., Zhu Q., Pan K., Hu Q.	Engineered hydrochar composites for phosphorus removal/recovery: Lanthanum doped hydrochar prepared by hydrothermal carbonization of lanthanum pretreated rice straw.	Bioresour. Technol.	161C	327-332	2014		
38387	24633442	Shao Y., Lei M., Mao Z., Zhou Y., Chen F.	Insights into Monascus biology at the genetic level.	Appl. Microbiol. Biotechnol.	98(9)	3911-22	2014		
38388	24462689	Zhang Y., Yan C., Kuang H.	GC content fluctuation around plant small RNA-generating sites.	FEBS Lett.	588(5)	764-9	2014		
38389	24466314	Zhou J., Yu F., Wang X., Yang Y., Yu C., Liu H., Cheng Y., Yan C., Chen J.	Specific expression of DR5 promoter in rice roots using a tCUP derived promoter-reporter system.	PLoS ONE	9(1)	e87008	2014		
38390	24466254	Qiu Z., Jiang H., Ding J., Hu Y., Shang X.	pollen and phytolith evidence for rice cultivation and vegetation change during the mid-late holocene at the Jiangli site, Suzhou, East China.	PLoS ONE	9(1)	e86816	2014		
38391	23706976	Hsu C.C., Jhang H.R., Chang W.T., Lin C.H., Shin S.J., Hwang S.J., Huang M.C.	Associations between dietary patterns and kidney function indicators in type 2 diabetes.	Clin Nutr	33(1)	98-105	2014		
38392	24489765	Wan P.J., Jia S., Li N., Fan J.M., Li G.Q.	RNA interference depletion of the Halloween gene disembodied implies its potential application for management of planthopper Sogatella furcifera and Laodelphax striatellus.	PLoS ONE	9(1)	e86675	2014		
38393	24516534	Sarkar A., Reinhold-Hurek B.	Transcriptional profiling of nitrogen fixation and the role of NifA in the diazotrophic endophyte Azoarcus sp. strain BH72.	PLoS ONE	9(2)	e86527	2014		
38394	24492469	Bakshi M., Oelm?ller R.	WRKY transcription factors: Jack of many trades in plants.	Plant Signal Behav	9(1)		2014		
38395	24531270	An C., Kuda T., Yazaki T., Takahashi H., Kimura B.	Caecal environment of rats fed far East Asian-modelled diets.	Appl. Microbiol. Biotechnol.	98(10)	4701-9	2014		
38396	24586434	Zhu L., Hu N., Yang M., Zhan X., Zhang Z.	Effects of different tillage and straw return on soil organic carbon in a rice-wheat rotation system.	PLoS ONE	9(2)	e88900	2014		
38397	24505334	Dj?nontin A., Pennetier C., Zogo B., Soukou K.B., Ole-Sangba M., Akogb?to M., Chandre F., Yadav R., Corbel V.	Field Efficacy of Vectobac GR as a Mosquito Larvicide for the Control of Anopheline and Culicine Mosquitoes in Natural Habitats in Benin, West Africa.	PLoS ONE	9(2)	e87934	2014		
38398	24409328	Zhang X., Li Y., Romeis J., Yin X., Wu K., Peng Y.	Use of a pollen-based diet to expose the ladybird beetle Propylea japonica to insecticidal proteins.	PLoS ONE	9(1)	e85395	2014		
38399	24414128	Hu Y., Mao B., Peng Y., Sun Y., Pan Y., Xia Y., Sheng X., Li Y., Tang L., Yuan L., Zhao B.	Deep re-sequencing of a widely used maintainer line of hybrid rice for discovery of DNA polymorphisms and evaluation of genetic diversity.	Mol. Genet. Genomics	289(3)	303-15	2014		
38400	24571491	Xie L., Tan Z., Zhou Y., Xu R., Feng L., Xing Y., Qi X.	Identification and fine mapping of quantitative trait loci for seed vigor in germination and seedling establishment in rice.	J Integr Plant Biol	56(8)	749-59	2014		
38401	24682459	Lu G., Wang X., Liu J., Yu K., Gao Y., Liu H., Wang C., Wang W., Wang G., Liu M., Mao G., Li B., Qin J., Xia M., Zhou J., Liu J., Jiang S., Mo H., Cui J., Nagasawa N., Sivasankar S., Albertsen M.C., Sakai H., Mazur B.J., Lassner M.W., Broglie R.M.	Application of T-DNA activation tagging to identify glutamate receptor-like genes that enhance drought tolerance in plants.	Plant Cell Rep.	33(4)	617-31	2014		
38402	24603905	Huo Y., Liu W., Zhang F., Chen X., Li L., Liu Q., Zhou Y., Wei T., Fang R., Wang X.	Transovarial transmission of a plant virus is mediated by vitellogenin of its insect vector.	PLoS Pathog.	10(3)	e1003949	2014		
38403	24523924	Wu W., Zheng L., Chen H., Jia D., Li F., Wei T.	Nonstructural protein NS4 of Rice Stripe Virus plays a critical role in viral spread in the body of vector insects.	PLoS ONE	9(2)	e88636	2014		
38404	24300846	Ronda S.R., Kethineni C., Parupudi L.C., Thunuguntla V.B., Vemula S., Settaluri V.S., Allu P.R., Grande S.K., Sharma S., Kandala C.V.	A growth inhibitory model with SO(x) influenced effective growth rate for estimation of algal biomass concentration under flue gas atmosphere.	Bioresour. Technol.	152	283-91	2014		
38405	24664256	Quinn C.R., Iriyama R., Fernando D.D.	Expression patterns of conserved microRNAs in the male gametophyte of loblolly pine (Pinus taeda).	Plant Reproduction	27(2)	69-78	2014		
38406	24442255	Bhattacharyya A., Saha J., Haldar S., Bhowmic A., Mukhopadhyay U.K., Mukherjee J.	Production of poly-3-(hydroxybutyrate-co-hydroxyvalerate) by Haloferax mediterranei using rice-based ethanol stillage with simultaneous recovery and re-use of medium salts.	Extremophiles	18(2)	463-70	2014		
38407	24518682	Yuan Y., Yu S., Yu J., Zhan Z., Li M., Liu G., Wang X., Huang L.	Predicting the function of 4-coumarate:CoA ligase (LJ4CL1) in Lonicera japonica.	Int J Mol Sci	15(2)	2386-99	2014		
38408	24243207	Liu G., Campbell B.C., Godwin I.D.	Sorghum genetic transformation by particle bombardment.	Methods Mol. Biol.	1099	219-34	2014		
38409	24548929	Zhao H., Yu H., Yuan X., Piao R., Li H., Wang X., Cui Z.	Degradation of lignocelluloses in rice straw by BMC-9, a composite microbial system.	J. Microbiol. Biotechnol.	24(5)	585-724	2014		
38410	24445591	Wu C.S., Kuo W.T., Chang C.Y., Kuo J.Y., Tsai Y.T., Yu S.M., Wu H.T., Chen P.W.	The modified rice alphaAmy8 promoter confers high-level foreign gene expression in a novel hypoxia-inducible expression system in transgenic rice seedlings.	Plant Mol. Biol.	85(1-2)	147-61	2014	AMY3E	Amy3D/E*(RAmy3D/E), alpha Amy8, alphaAmy8, AmyII-3, AMY1.4, Amy3E, Amy3D/E*, RAmy3D/E, Amy9, RAmy3E, alphaAmy8-C, AMY3E/AMY1.4, OsAmy3E, OsRamy3E
38411	24568490	Summart R., Chewonarin T.	Purple rice extract supplemented diet reduces DMH- induced aberrant crypt foci in the rat colon by inhibition of bacterial beta-glucuronidase.	Asian Pac. J. Cancer Prev.	15(2)	749-55	2014		
38412	24398116	Chen J.S., Lin S.C., Chen C.Y., Hsieh Y.T., Pai P.H., Chen L.K., Lee S.	Development of a microarray for two rice subspecies: characterization and validation of gene expression in rice tissues.	BMC Res Notes	7	15	2014		
38413	24472286	Chen Y., Hao X., Cao J.	Small auxin upregulated RNA (SAUR) gene family in maize: identification, evolution, and its phylogenetic comparison with Arabidopsis, rice, and sorghum.	J Integr Plant Biol	56(2)	133-50	2014		
38414	24688294	Ding B., Wang J., Song N., Li M., Cheng Q., Huang G., Guo Y., Fu Y., Xie C., Sun Q., Xie X.	TaWRKY68 responses to biotic stresses are revealed by the orthologous genes from major cereals.	Genet. Mol. Biol.	37(1)	73-80	2014		
38415	24556552	Chen K., Shan Q., Gao C.	An efficient TALEN mutagenesis system in rice.	Methods	69(1)	2-8	2014		
38416	24405808	Hou C.Y., Wu M.T., Lu S.H., Hsing Y.I., Chen H.M.	Beyond cleaved small RNA targets: unraveling the complexity of plant RNA degradome data.	BMC Genomics	15	15	2014		
38417	24675748	Xue X.B., Zou L.F., Ma W.X., Liu Z.Y., Chen G.Y.	Identification of 17 HrpX-Regulated Proteins Including Two Novel Type III Effectors, XOC_3956 and XOC_1550, in Xanthomonas oryzae pv. oryzicola.	PLoS ONE	9(3)	e93205	2014		
38418	24588175	?lvarez-Barcia S., Flores J.R.	Hydrogen migration dynamics in hydrated Al clusters: the Al17(-)EH2O system as an example.	J Chem Phys	140(8)	084313	2014		
38419	24456316	Blankenship C.S., Tortella B.J., Bruno M.	BE EMPOWERED, a specialty pharmacy education program for hemophilia B patients, impacts adult joint bleeds and pediatric use of RICE.	J Manag Care Pharm	20(2)	151-8	2014		
38420	24433960	De Marco M., Peiretti P.G., Miraglia N., Bergero D.	Apparent digestibility of broken rice in horses using in vivo and in vitro methods.	Animal	8(2)	245-9	2014		
38421	24637831	Wang F., Li D., Wang Z., Dong A., Liu L., Wang B., Chen Q., Liu X.	Transcriptomic Analysis of the Rice White Tip Nematode, Aphelenchoides besseyi (Nematoda: Aphelenchoididae).	PLoS ONE	9(3)	e91591	2014		
38422	24586171	Cernadas R.A., Doyle E.L., Ni?o-Liu DO., Wilkins K.E., Bancroft T., Wang L., Schmidt C.L., Caldo R., Yang B., White F.F., Nettleton D., Wise R.P., Bogdanove A.J.	Code-assisted discovery of TAL effector targets in bacterial leaf streak of rice reveals contrast with bacterial blight and a novel susceptibility gene.	PLoS Pathog.	10(2)	e1003972	2014		
38423	24499797	Li X., Han L., Zhao Y., You Z., Dong H., Zhang C.	Hpa1 harpin needs nitroxyl terminus to promote vegetative growth and leaf photosynthesis in Arabidopsis.	J. Biosci.	39(1)	127-37	2014		
38424	24484685	Rosa M.L., Falc?o PM., Yokoo E.M., da Cruz Filho RA., Alcoforado V.M., de Souza Bda S., Pinto F.N., Nery A.B.	Brazil's staple food and incident diabetes.	Nutrition	30(3)	365-8	2014		
38425	24643171	Claoston N., Samsuri A., Ahmad Husni M., Mohd Amran M.	Effects of pyrolysis temperature on the physicochemical properties of empty fruit bunch and rice husk biochars.	Waste Manag Res	32(4)	331-9	2014		
38426	24658143	Awan T.H., Chauhan B.S., Cruz P.C.	Influence of Environmental Factors on the Germination of Urena lobata L. and Its Response to Herbicides.	PLoS ONE	9(3)	e90305	2014		
38427	24632627	Bunterngsook B., Mhuantong W., Champreda V., Thamchaiphenet A., Eurwilaichitr L.	Identification of novel bacterial expansins and their synergistic actions on cellulose degradation.	Bioresour. Technol.	159C	64-71	2014		
38428	24420841	Chen Z., Dong F., Xu J., Liu X., Cheng Y., Liu N., Tao Y., Zheng Y.	Stereoselective determination of a novel chiral insecticide, sulfoxaflor, in brown rice, cucumber and apple by normal-phase high-performance liquid chromatography.	Chirality	26(2)	114-20	2014		
38429	24389666	Niehaus E.M., von Bargen KW., Espino J.J., Pfannm?ller A., Humpf H.U., Tudzynski B.	Characterization of the fusaric acid gene cluster in Fusarium fujikuroi.	Appl. Microbiol. Biotechnol.	98(4)	1749-62	2014		
38430	24680698	Li T., Liu B., Chen C.Y., Yang B.	TALEN utilization in rice genome modifications.	Methods	69(1)	9-16	2014		
38431	24521457	Zheng C.K., Wang C.L., Zhang X.P., Wang F.J., Qin T.F., Zhao K.J.	The last half-repeat of transcription activator-like effector (TALE) is dispensable and thereby TALE-based technology can be simplified.	Mol. Plant Pathol.	15(7)	690-7	2014		
38432	24370634	Limami A.M., Diab H., Lothier J.	Nitrogen metabolism in plants under low oxygen stress.	Planta	239(3)	531-41	2014		
38433	24358146	Zheng W., Ma L., Zhao J., Li Z., Sun F., Lu X.	Comparative transcriptome analysis of two rice varieties in response to rice stripe virus and small brown planthoppers during early interaction.	PLoS ONE	8(12)	e82126	2013		
38434	24302292	Luan W., Shen A., Jin Z., Song S., Li Z., Sha A.	Knockdown of OsHox33, a member of the class III homeodomain-leucine zipper gene family, accelerates leaf senescence in rice.	Sci China Life Sci	56(12)	1113-23	2013		
38435	24321450	Mo Y.J., Jeung J.U., Shin Y.S., Park C.S., Kang K.H., Kim B.K.	Agronomic and genetic analysis of Suweon 542, a rice floury mutant line suitable for dry milling.	Rice (N Y)	6	37	2013	FLO7,FLO4	Flo7, flo7(t), flo-7,FLO4-4, flo4, flo4-2, flo4-3, ppdk, OsPPDK, PPDK1, CPDK1, PPDKB, OsPPDKB, cyOsPPDKB, OsPBDK, PBDK, osppdkb, PPD, cyPPDK, chPPDKB, chOsPPDKB
38436	24302673	Heap I.	Global perspective of herbicide-resistant weeds.	Pest Manag. Sci.	70(9)	1306-15	2013		
38437	24344809	Wang X., Wang Y., Pi?eros MA., Wang Z., Wang W., Li C., Wu Z., Kochian L.V., Wu P.	Phosphate transporters OsPHT1;9 and OsPHT1;10 are involved in phosphate uptake in rice.	Plant Cell Environ.	37(5)	1159-70	2014		
38438	24346765	Chen W.H., Chen Y.C., Lin J.G.	Study of chemical pretreatment and enzymatic saccharification for producing fermentable sugars from rice straw.	Bioprocess Biosyst Eng	37(7)	1337-44	2014		
38439	24295086	Poli Y., Basava R.K., Panigrahy M., Vinukonda V.P., Dokula N.R., Voleti S.R., Desiraju S., Neelamraju S.	Characterization of a Nagina22 rice mutant for heat tolerance and mapping of yield traits.	Rice (N Y)	6	36	2013		
38440	24390992	Li H., Ni D.H., Duan Y.B., Chen Y., Li J., Song F.S., Li L., Wei P.C., Yang J.B.	Quantitative detection of the rice false smut pathogen Ustilaginoidea virens by real-time PCR.	Genet. Mol. Res.	12(4)	6433-41	2013		
38441	24324772	Li L., Li D., Liu S., Ma X., Dietrich C.R., Hu H.C., Zhang G., Liu Z., Zheng J., Wang G., Schnable P.S.	The maize glossy13 gene, cloned via BSR-Seq and Seq-walking encodes a putative ABC transporter required for the normal accumulation of epicuticular waxes.	PLoS ONE	8(12)	e82333	2013		
38442	24355013	Gholizadeh A., Kermani M., Gholami M., Farzadkia M.	Kinetic and isotherm studies of adsorption and biosorption processes in the removal of phenolic compounds from aqueous solutions: comparative study.	J Environ Health Sci Eng	11(1)	29	2013		
38443	24337801	You J., Zong W., Du H., Hu H., Xiong L.	A special member of the rice SRO family, OsSRO1c, mediates responses to multiple abiotic stresses through interaction with various transcription factors.	Plant Mol. Biol.	84(6)	693-705	2014		
38444	24419631	Kosami K., Ohki I., Hayashi K., Tabata R., Usugi S., Kawasaki T., Fujiwara T., Nakagawa A., Shimamoto K., Kojima C.	Purification, crystallization and preliminary X-ray crystallographic analysis of a rice Rac/Rop GTPase, OsRac1.	Acta Crystallogr F Struct Biol Commun	70(Pt 1)	113-5	2014		
38445	24336929	Subudhi P.K., Singh P.K., DeLeon T., Parco A., Karan R., Biradar H., Cohn M.A., Sasaki T.	Mapping of Seed shattering Loci provides insights into origin of weedy rice and rice domestication.	J. Hered.	105(2)	276-87			
38446	24391039	Morais M.M., Turcatto A.P., Pereira R.A., Francoy T.M., Guidugli-Lazzarini KR., Gon?alves LS., de Almeida JM., Ellis J.D., De Jong D.	Protein levels and colony development of Africanized and European honey bees fed natural and artificial diets.	Genet. Mol. Res.	12(4)	6915-22	2013		
38447	24339403	Tandon S.	Degradation kinetics of anilofos in soil and residues in rice crop at harvest.	Pest Manag. Sci.			2013		
38448	24389954	Chen X., Itani T., Wu X., Chikawa Y., Irifune K.	Physiological factors affecting transcription of genes involved in the flavonoid biosynthetic pathway in different rice varieties.	Plant Signal Behav	8(12)	e27555	2013	ANS,PKS6,RD,LAR,CHI3	ANS, OsANS1, ANS1, LDOX, LDOX1, OsLDOX, OsLDOX1,CHS, OsPKS06, OsPKS6, PKS06, OsCHS6, CHS6,Rd, DFR, OsDFR, OS-DFR, OsDFR1, DFR1, DFR-1,OsLAR,gh1, GH1, OsGH1, OsCHI, Cfi, CHI, OsCHI3
38449	24359672	Feng H., Xia X., Fan X., Xu G., Miller A.J.	Optimizing plant transporter expression in Xenopus oocytes.	Plant Methods	9(1)	48	2013		
38450	24304553	Colasuonno P., Maria M.A., Blanco A., Gadaleta A.	Description of durum wheat linkage map and comparative sequence analysis of wheat mapped DArT markers with rice and Brachypodium genomes.	BMC Genet.	14	114	2013		
38451	24400015	Impa S.M., Gramlich A., Tandy S., Schulin R., Frossard E., Johnson-Beebout SE.	Internal Zn allocation influences Zn deficiency tolerance and grain Zn loading in rice (Oryza sativa L.).	Front Plant Sci	4	534	2013		
38452	24341349	Wu Z., Zhang M., Wang L., Tu Y., Zhang J., Xie G., Zou W., Li F., Guo K., Li Q., Gao C., Peng L.	Biomass digestibility is predominantly affected by three factors of wall polymer features distinctive in wheat accessions and rice mutants.	Biotechnol Biofuels	6(1)	183	2013		
38453	24329970	Suriyaprabha R., Karunakaran G., Yuvakkumar R., Prabu P., Rajendran V., Kannan N.	Effect of silica nanoparticles on microbial biomass and silica availability in maize rhizosphere.	Biotechnol. Appl. Biochem.	61(6)	668-75	2014		
38454	24391861	Yang M., Zhang W., Dong H., Zhang Y., Lv K., Wang D., Lian X.	OsNRAMP3 is a vascular bundles-specific manganese transporter that is responsible for manganese distribution in rice.	PLoS ONE	8(12)	e83990	2013		
38455	24371175	Yadav S., Singh A., Singh M.R., Goel N., Vinod K.K., Mohapatra T., Singh A.K.	Assessment of genetic diversity in Indian rice germplasm (Oryza sativa L.): use of random versus trait-linked microsatellite markers.	J. Genet.	92(3)	545-57	2013		
38456	24697072	Liu T., Ye C.L., Chen X.Y., Ran W., Shen Q.R., Hu F., Li H.X.	[Effects of different organic manure sources and their combinations with chemical fertilization on soil nematode community structure in a paddy field of East China].	Ying Yong Sheng Tai Xue Bao	24(12)	3508-16	2013		
38457	24315532	Takahashi H., Wang S., Hayashi S., Wakasa Y., Takaiwa F.	Cis-element of the rice PDIL2-3 promoter is responsible for inducing the endoplasmic reticulum stress response.	J. Biosci. Bioeng.	117(5)	620-3	2014		
38458	24351075	Masuda H., Aung M.S., Nishizawa N.K.	Iron biofortification of rice using different transgenic approaches.	Rice (N Y)	6	40	2013		
38459	23999155	Lai D., Br?tz-Oesterhelt H., M?ller WE., Wray V., Proksch P.	Bioactive polyketides and alkaloids from Penicillium citrinum, a fungal endophyte isolated from Ocimum tenuiflorum.	Fitoterapia	91	100-6	2013		
38460	24358300	Zhang Q., Ding Y., Yao Y., Yu Y., Yang L., Cui H.	Creating rat model for hypoxic brain damage in neonates by oxygen deprivation.	PLoS ONE	8(12)	e83589	2013		
38461	24341871	Wei F.J., Droc G., Guiderdoni E., Hsing Y.I.	International Consortium of Rice Mutagenesis: resources and beyond.	Rice (N Y)	6	39	2013		
38462	24299927	Sakamoto T., Kitano H., Fujioka S.	An E3 ubiquitin ligase, ERECT LEAF1, functions in brassinosteroid signaling of rice.	Plant Signal Behav	8	e27117	2013	CPD1,_,D61,ELF1,D2,PIS1,D11,SH11,DWARF4,BU1,BRD1,_	OsCPD1, CYP90A3, CYP90A3/OsCPD1, CPD, OsCPD2, CPD2,Dhr6, OsUBC5b, OsUBC16, UBC16,d61*, dwf42, d61, OsBRI1, OSBRI1, BRI1, Os BRI1, Osbri1, OsBRKq1, BRKq1,OsPUB31, PUB31, OsPUB75, PUB75, TUD1, OsTUD1, DSG1,  OsPUB75, PUB75,d2, dwf2, CYP90D2, D2/CYP90D2, OsD2, SMG11, OsSMG11, D2/SMG11, OsD2a, OsD2b,OsPIS1,d11(d8), dwf10, d8, D11/CYP724B1, d11, CYP724B1, GNS4, OsD11, PMM1, OsPMM1, PMM1/D11, NBG4, OsCPB1, CPB1, CPB1/D11,OsJAmyb, JAmyb, OsJAMyb, OsMYB21, MYB21, Os2R_MYB91, 2R_MYB91, OgSH11, OsSH11,OsDWARF4, osdwarf4, OsDWF4, DWF4, CYP90B2, OsCYP90B2, D4, OsD4,ILI4, OsILI4 , OsBU1, BU1/ILI4, OsbHLH172, bHLH172,brd1, OsDWARF, DWARF, OsBR6ox, BR6ox, CYP85A1, CYP85A4, OsDWF, CYP85A1/OsDWARF, OsBRD1, OsCYP85A1,OsSERK3, OsSERL6, OsBI-SERK1, BI-SERK1, OsBAK1-3
38463	23999673	Raj D., Lodha R., Pandey A., Mukherjee A., Agrawal A., Kabra S.K.	Aeroallergen sensitization in childhood asthmatics in northern India.	Indian Pediatr	50(12)	1113-8	2013		
38464	24571556	Gerhard D., Bremer M., Ritz C.	Estimating marginal properties of quantitative real-time PCR data using nonlinear mixed models.	Biometrics	70(1)	247-54	2014		
38465	24336345	Meng Y., Shao C., Wang H., Chen M.	Uncovering DCL1-dependent small RNA loci on plant genomes: a structure-based approach.	J. Exp. Bot.	65(2)	395-400	2014		
38466	24306693	Subburaj S., Chen G., Han C., Lv D., Li X., Zeller F.J., Hsam S.L., Yan Y.	Molecular characterisation and evolution of HMW glutenin subunit genes in Brachypodium distachyon L.	J. Appl. Genet.	55(1)	27-42	2014		
38467	24367635	Singh N., Choudhury D.R., Singh A.K., Kumar S., Srinivasan K., Tyagi R.K., Singh N.K., Singh R.	Comparison of SSR and SNP markers in estimation of genetic diversity and population structure of Indian rice varieties.	PLoS ONE	8(12)	e84136	2013		
38468	24467897	Shi C.C., Feng C.C., Yang M.M., Li J.L., Li X.X., Zhao B.C., Huang Z.J., Ge R.C.	Overexpression of the receptor-like protein kinase genes AtRPK1 and OsRPK1 reduces the salt tolerance of Arabidopsis thaliana.	Plant Sci.	217-218	63-70	2014		
38469	24324328	Muhammad S.I., Maznah I., Mahmud R.B., Saeed M.I., Imam M.U., Ishaka A.	Estrogen receptor modulatory effects of germinated brown rice bioactives in the uterus of rats through the regulation of estrogen-induced genes.	Drug Des Devel Ther	7	1409-20	2013		
38470	24551824	Lee J.H., Choi K.H., Sohn E.H., Jang K.H.	Quality characteristics and ginsenosides composition of ginseng-yakju according to the particle size of ginseng powder.	Preventive Nutrition and Food Science	18(4)	234-41	2013		
38471	24237673	Panyakaew P., Boon N., Goel G., Yuangklang C., Schonewille J.T., Hendriks W.H., Fievez V.	Effect of supplementing coconut or krabok oil, rich in medium-chain fatty acids on ruminal fermentation, protozoa and archaeal population of bulls.	Animal	7(12)	1950-8	2013		
38472	24462668	Ratnayake S., Beahan C.T., Callahan D.L., Bacic A.	The reducing end sequence of wheat endosperm cell wall arabinoxylans.	Carbohydr. Res.	386	23-32	2014		
38473	24359557	Prawitwong P., Waeonukul R., Tachaapaikoon C., Pason P., Ratanakhanokchai K., Deng L., Sermsathanaswadi J., Septiningrum K., Mori Y., Kosugi A.	Direct glucose production from lignocellulose using Clostridium thermocellum cultures supplemented with a thermostable beta-glucosidase.	Biotechnol Biofuels	6(1)	184	2013		
38474	24315403	Teo Z.W., Song S., Wang Y.Q., Liu J., Yu H.	New insights into the regulation of inflorescence architecture.	Trends Plant Sci.	19(3)	158-65	2014		
38475	24377498	Jayatilake D.V., Tucker E.J., Bariana H., Kuchel H., Edwards J., McKay A.C., Chalmers K., Mather D.E.	Genetic mapping and marker development for resistance of wheat against the root lesion nematode Pratylenchus neglectus.	BMC Plant Biol.	13	230	2013		
38476	24360894	Lian X., Wang C., Zhang K., Li L.	The retrogradation properties of glutinous rice and buckwheat starches as observed with FT-IR, 13C NMR and DSC.	Int. J. Biol. Macromol.	64	288-93	2014		
38477	24433791	Rahman M.A., Rahman M.M., Reichman S.M., Lim R.P., Naidu R.	Heavy metals in Australian grown and imported rice and vegetables on sale in Australia: health hazard.	Ecotoxicol. Environ. Saf.	100	53-60	2014		
38478	24372448	Fan W., Lou H.Q., Gong Y.L., Liu M.Y., Wang Z.Q., Yang J.L., Zheng S.J.	Identification of early Al-responsive genes in rice bean (Vigna umbellata) roots provides new clues to molecular mechanisms of Al toxicity and tolerance.	Plant Cell Environ.	37(7)	1586-97	2013		
38479	24376835	Wu H., Qin J., Han J., Zhao X., Ouyang S., Liang Y., Zhang D., Wang Z., Wu Q., Xie J., Cui Y., Peng H., Sun Q., Liu Z.	Comparative high-resolution mapping of the wax inhibitors Iw1 and Iw2 in hexaploid wheat.	PLoS ONE	8(12)	e84691	2013		
38480	24341907	Minh-Thu PT., Hwang D.J., Jeon J.S., Nahm B.H., Kim Y.K.	Transcriptome analysis of leaf and root of rice seedling to acute dehydration.	Rice (N Y)	6	38	2013		
38481	24385353	Hong S.B., Lee M., Kim D.H., Chung S.H., Shin H.D., Samson R.A.	The proportion of non-aflatoxigenic strains of the Aspergillus flavus/oryzae complex from meju by analyses of the aflatoxin biosynthetic genes.	J. Microbiol.	51(6)	766-72	2013		
38482	24302714	Liu C.F., Wu C.X., Rafiq M.T., Aziz R., Hou D.D., Ding Z.L., Lin Z.W., Lou L.J., Feng Y.Y., Li T.Q., Yang X.E.	Accumulation of mercury in rice grain and cabbage grown on representative Chinese soils.	J Zhejiang Univ Sci B	14(12)	1144-51	2013		
38483	24370926	Dutta N., Mukhopadhyay A., Dasgupta A.K., Chakrabarti K.	Improved production of reducing sugars from rice husk and rice straw using bacterial cellulase and xylanase activated with hydroxyapatite nanoparticles.	Bioresour. Technol.	153	269-77	2014		
38484	24338426	An H.S., Park J.Y., Myeong J.I., An C.M.	Genetic relationships of Pacific abalone (Haliotidae) species determined using universal rice primer-polymerase chain reaction fingerprinting.	Genet. Mol. Res.	12(4)	6309-18	2013		
38485	24317430	Shafie N.H., Esa N.M., Ithnin H., Saad N., Pandurangan A.K.	Pro-apoptotic effect of rice bran inositol hexaphosphate (IP6) on HT-29 colorectal cancer cells.	Int J Mol Sci	14(12)	23545-58	2013		
38486	24366178	Heinz E., Kraft P., Buchen C., Frede H.G., Aquino E., Breuer L.	Set up of an automatic water quality sampling system in irrigation agriculture.	Sensors (Basel)	14(1)	212-28	2013		
38487	24377869	Tan C., Han Z., Yu H., Zhan W., Xie W., Chen X., Zhao H., Zhou F., Xing Y.	QTL scanning for rice yield using a whole genome SNP array.	J Genet Genomics	40(12)	629-38	2013		
38488	24370676	Sawadogo P.S., Namountougou M., To? KH., Rouamba J., Ma?ga H., Ou?draogo KR., Baldet T., Gouagna L.C., Kengne P., Simard F., Costantini C., Gibson G., Diabat? A., Lees R.S., Gilles J.R., Dabir? KR.	Swarming behaviour in natural populations of Anopheles gambiae and An. coluzzii: Review of 4 years survey in rural areas of sympatry, Burkina Faso (West Africa).	Acta Trop.	132 Suppl	S42-52	2014		
38489	24611390	Xu P., Gu X.H., Meng L.M., Qiu H., Wang H.F.	[Change of LAI and spectral response for rice under flood and waterlogging stress].	Guang Pu Xue Yu Guang Pu Fen Xi	33(12)	3298-302	2013		
38490	24400353	Cottrell R.G.	From RICE to PRICE.	Nursing	43(12)	8	2013		
38491	24371165	Mohammadi R., Mendioro M.S., Diaz G.Q., Gregorio G.B., Singh R.K.	Mapping quantitative trait loci associated with yield and yield components under reproductive stage salinity stress in rice (Oryza sativa L.).	J. Genet.	92(3)	433-43	2013		
38492	24228908	Cherdthong A., Wanapat M.	Rumen microbes and microbial protein synthesis in Thai native beef cattle fed with feed blocks supplemented with a urea-calcium sulphate mixture.	Arch Anim Nutr	67(6)	448-60	2013		
38493	24376554	Wang X., Hargrove M.S.	Nitric oxide in plants: the roles of ascorbate and hemoglobin.	PLoS ONE	8(12)	e82611	2013	MDHAR3,Hb1	MDHAR, OsMDHAR, OsMDAR3, MDAR3, OsMDHAR3, MDHAR1, OsMDHAR1,HB1, OsHB1, GLB1A, rHb1, ORYsa GLB1a, nsHb1, OsNSHB1, hb1, nsHb, OsPgb1.1, Pgb1.1
38494	24317058	Nakamura S., Nakano Y., Satoh H., Ohtsubo K.	Improved palatability and bio-functionality of super-hard rice by soaking in a barley-koji miso suspension.	Biosci. Biotechnol. Biochem.	77(12)	2419-29	2013		
38495	24467893	Sohn S.I., Kim Y.H., Kim S.L., Lee J.Y., Oh Y.J., Chung J.H., Lee K.R.	Genistein production in rice seed via transformation with soybean IFS genes.	Plant Sci.	217-218	27-35	2014		
38496	24338598	Clark A.L., Tayles N., Halcrow S.E.	Aspects of health in prehistoric mainland Southeast Asia: Indicators of stress in response to the intensification of rice agriculture.	Am. J. Phys. Anthropol.	153(3)	484-95	2014		
38497	24324764	Li C., Liu B., Li C., Zeng Q., Hao M., Han Z., Zhu J., Li X., Shen W.	Leaf morphology and ultrastructure responses to elevated O3 in transgenic Bt (cry1Ab/cry1Ac) rice and conventional rice under fully open-air field conditions.	PLoS ONE	8(12)	e82199	2013		
38498	24306352	Yang Y., Zhao J., Xing H., Wang J., Zhou K., Zhan G., Zhang H., Kang Z.	Different non-host resistance responses of two rice subspecies, japonica and indica, to Puccinia striiformis f. sp. tritici.	Plant Cell Rep.	33(3)	423-33	2014		
38499	24365393	Lin J., Kreisberg R., Kallio A., Dudley A.M., Nykter M., Shmulevich I., May P., Autio R.	POMO--Plotting Omics analysis results for Multiple Organisms.	BMC Genomics	14	918	2013		
38500	24378555	Zhang S., Xu R., Gao Z., Chen C., Jiang Z., Shu H.	A genome-wide analysis of the expansin genes in Malus X Domestica.	Mol. Genet. Genomics	289(2)	225-36	2014		
38501	24335666	Chu S.C., Hsieh Y.S., Hsu L.S., Chen K.S., Chiang C.C., Chen P.N.	Rubus idaeus L Inhibits Invasion Potential of Human A549 Lung Cancer Cells by Suppression Epithelial-to-Mesenchymal Transition and Akt Pathway In Vitro and Reduces Tumor Growth In Vivo.	Integr Cancer Ther	13(3)	259-273	2013		
38502	24484953	Lee H.W., Park J.H., Park M.Y., Kim J.	GIP1 may act as a coactivator that enhances transcriptional activity of LBD18 in Arabidopsis.	J. Plant Physiol.	171(5)	14-8	2014		
38503	24322445	Zhang S., Lian Y., Liu Y., Wang X., Liu Y., Wang G.	Characterization of a maize Wip1 promoter in transgenic plants.	Int J Mol Sci	14(12)	23872-92	2013		
38504	24355316	Yadavalli R., Heggers G.R.	Two stage treatment of dairy effluent using immobilized Chlorella pyrenoidosa.	J Environ Health Sci Eng	11(1)	36	2013		
38505	24313332	Byeon Y., Back K.	Melatonin synthesis in rice seedlings in vivo is enhanced at high temperatures and under dark conditions due to increased serotonin N-acetyltransferase and N-acetylserotonin methyltransferase activities.	J. Pineal Res.	56	189 195	2013		
38506	24388655	Janagama H.K., Tounkang S., Cirillo S.L., Zinniel D.K., Barletta R.G., Cirillo J.D.	Molecular analysis of the Mycobacterium tuberculosis lux-like mel2 operon.	Tuberculosis (Edinb)	93 Suppl	S83-7	2013		
38507	24391003	Zhou S.J., Jing Z., Shi J.L.	Genome-wide identification, characterization, and expression analysis of the MLO gene family in Cucumis sativus.	Genet. Mol. Res.	12(4)	6565-78	2013		
38508	24669714	Ruan H., Rong W., Ma Y., Ji W., LIU H., Song N.	[Determination of 34 pesticide residues in rice, proso millet and wheat with QuEChERS-on line gel permeation chromatography-gas chromatography-mass spectrometry].	Se Pu	31(12)	1211-7	2013		
38509	24317047	Hamamoto Y., Tsukiyama T., Yoshikake Y., Teraishi M., Okumoto Y., Tanisaka T.	Transient dual-luciferase assay combined with a glucocorticoid-inducible system for rice protoplasts.	Biosci. Biotechnol. Biochem.	77(12)	2480-2	2013		
38510	24402821	Gopal J.V., Kannabiran K.	Studies on interaction of insect repellent compounds with odorant binding receptor proteins by in silico molecular docking approach.	Interdiscip Sci	5(4)	280-5	2013		
38511	24371307	Osakabe K., Nishizawa-Yokoi A., Ohtsuki N., Osakabe Y., Toki S.	A Mutated Cytosine Deaminase Gene, codA (D314A), as an Efficient Negative Selection Marker for Gene Targeting in Rice.	Plant Cell Physiol.	55(3)	658-65	2014		
38512	24341723	Chen C., Lian B., Hu J., Zhai H., Wang X., Venu R.C., Liu E., Wang Z., Chen M., Wang B., Wang G.L., Wang Z., Mitchell T.K.	Genome comparison of two Magnaporthe oryzae field isolates reveals genome variations and potential virulence effectors.	BMC Genomics	14	887	2013		
38513	24454511	Giovanni S., Silvia B., Eugenio R., Stefania F., Romina V., Annunziata L.	Mediterranean Diet and Red Yeast Rice Supplementation for the Management of Hyperlipidemia in Statin-Intolerant Patients with or without Type 2 Diabetes.	Evid Based Complement Alternat Med	2013	743473	2013		
38514	24334350	Obayashi T., Okamura Y., Ito S., Tadaka S., Aoki Y., Shirota M., Kinoshita K.	ATTED-II in 2014: evaluation of gene coexpression in agriculturally important plants.	Plant Cell Physiol.	55(1)	e6	2014		
38515	24312561	Liu W., Xu J., Wu S., Liu Y., Yu X., Chen J., Tang X., Wang Z., Zhu X., Li X.	Selective anti-proliferation of HER2-positive breast cancer cells by anthocyanins identified by high-throughput screening.	PLoS ONE	8(12)	e81586	2013		
38516	0	Lima M.G.S.a, Lopes N.F.a, Zimmer P.D.b, Meneghello G.E.b, Ferrari C.b, Mendes C.R.a	Detection of genes providing salinity-tolerance in rice [Detec??o de genes que conferem toler?ncia ? salinidade em planta de arroz]	Acta Scientiarum - Biological Sciences	36	79-85	2014		
38517	0	Williams K.a b, Sorrells M.E.a	Three-dimensional seed size and shape QTL in hexaploid wheat (Triticum aestivum L.) populations	Crop Sci.	54	98-110	2014		
38518	0	Zhang Y.a, Li J.a, Zhou J.W.a, Xu P.a, Deng X.N.a, Yang F.a b, Deng W.a, Hu F.Y.a, Tao D.Y.a	seed length controlled by same locus in four different AA genome species of genus oryza	Rice Science	21	20-28	2014		
38519	0	Zhang Z.a, Hao J.a, Yuan J.a, Song Q.b, Hyten D.L.b, Cregan P.B.b, Zhang G.c, Gu C.a, Li M.d, Wang D.a	Phytophthora root rot resistance in soybean E00003	Crop Sci.	54	492-499	2014		
38520	0	Nakano H.a b, Hattori I.c, Morita S.a	Yield and nutritive value response to row spacing and cultivar in forage rice	Grassland Science	60	55-62	2014		
38522	0	Chen C.a b, Wu W.a, Sun X.a, Li B.a, Hu G.a c, Zhang Q.a d, Li J.a, Zhang H.a, Li Z.a	Fine-mapping and candidate gene analysis of BLACK hull1 in rice (Oryza sativa L.)	Plant OMICS	7	12-18	2014	BHC	Ph=Bhc(Po), Bhc, Po, Ph, Bh3, PPO, Phr1, BH1
38523	0	Ujiie K., Ishimaru K.	Alleles affecting 30 traits for productivity in two japonica rice varieties, koshihikari and nipponbare (oryza sativa l.)	Plant Prod. Sci.	17	47-65	2014		
38524	0	Habib N.a, Ashraf M.b c	Effect of exogenously applied nitric oxide on water relations and ionic composition of rice (Oryza Sativa L.) plants under salt stress	Pak J Bot	46	111-116	2014		
38526	24350905	Tamiru M.a, Abe A.a b, Utsushi H.a, Yoshida K.a, Takagi H.a c, Fujisaki K.a, Undan J.R.a c, Rakshit S.a, Takaichi S.d, Jikumaru Y.e, Yokota T.e, Terry M.J.a f, Terauchi R.a	The tillering phenotype of the rice plastid terminal oxidase (PTOX) loss-of-function mutant is associated with strigolactone deficiency	New Phytologist	202	116-131	2014	_,IM1	,OsIM1, OsIM1a, OsIM2, OsIM, PTOX1
38528	24562500	Wang Y.a, Jiang X.a, Li K.a, Wu M.a b, Zhang R.a, Zhang L.a, Chen G.a	Photosynthetic responses of Oryza sativa L. seedlings to cadmium stress: Physiological, biochemical and ultrastructural analyses	Biometals	27	389-401	2014	HEMA,CAB1R,YGL1,YGL10,_	HEMA1, OsHEMA, GluTR, OsHEMA1, hemA,cab1R, LHCP, CAB, OsLhcb1, Lhcb1, Cab1, OsCAB1, Lhcb1b, OsLhcb1b, CAB2R,OsYGL1, CHLG, Ygl1, CS, OsCHLG,CAO, OsCAO, CAO1, OsCAO1, Oslls1, Lls1, DVR, PGL,ALAD, HEMB, OsALAD, OsHEMB, hemB
38529	0	Gao P.P.a, Zheng G.H.a, Wu Y.H.b, Liu P.a	Effect of exogenous potassium on photosynthesis and antioxidant enzymes of rice under iron toxicity	Russian Journal of Plant Physiology	61	47-52	2014		
38530	0	Ravisankar N., Gangwar B., Prasad K.	Influence of balanced fertilization on productivity and nutrient use efficiency of cereal based cropping systems	Indian Journal of Agricultural Sciences	84	248-254	2014		
38531	0	Chandran A.K.N.a, Jung K.H.a b	Resources for systems biology in rice	Journal of Plant Biology	57	80-92	2014		
38532	0	Mohammed A.R., Tarpley L.	Differential response of two important Southern US rice (Oryza sativa L.) cultivars to high night temperature	Aust J Crop Sci	8	191-199	2014		
38533	23512472	Dai L.a, Dai W.a, Song X.a, Lu B.b, Qiang S.a	A comparative study of competitiveness between different genotypes of weedy rice (Oryza sativa) and cultivated rice	Pest Manag. Sci.	70	113-122	2014		
38534	24405887	Kim Y.H.a, Khan A.L.b, Kim D.H.a, Lee S.Y.a, Kim K.M.a, Waqas M.a, Jung H.Y.a, Shin J.H.a, Kim J.G.c, Lee I.J.a	Silicon mitigates heavy metal stress by regulating P-type heavy metal ATPases, Oryza sativa low silicon genes, and endogenous phytohormones	BMC Plant Biol.	14	13	2014		
38535	0	Nath K.a b, Kumar S.c, Poudyal R.S.b, Yang Y.N.b, Timilsina R.a, Park Y.S.d, Nath J.b, Chauhan P.S.c, Pant B.e, Lee C.H.b	Developmental stage-dependent differential gene expression of Superoxide dismutase isoenzymes and their localization and physical interaction network in rice (Oryza sativa L.)	Genes and Genomics	36	45-55	2014		
38536	0	Fu Y.Q., Yang X.J., Shen H.	The physiological mechanism of enhanced oxidizing capacity of rice (Oryza sativa L.) roots induced by phosphorus deficiency	Acta Physiologiae Plantarum	36	179-190	2014		
38537	24390391	Weng X., Wang L., Wang J., Hu Y., Du H., Xu C., Xing Y., Li X., Xiao J., Zhang Q.	Grain Number, plant height, and Heading Date7 is a central regulator of growth, development, and stress response	Plant Physiol.	164	735-747	2014		
38538	0	Shu C., Sun S., Chen J., Chen J., Zhou E.	Comparison of different methods for total RNA extraction from sclerotia of Rhizoctonia solani	Electronic Journal of Biotechnology	17	50 54	2014		
38540	0	Ul Haq T.a d, Akhtar J.b, Steele K.A.c, Munns R.d e, Gorham J.c	Reliability of ion accumulation and growth components for selecting salt tolerant lines in large populations of rice	Functional Plant Biology	41	379-390	2014		
38543	0	Frouin J.a, Filloux D.b, Taillebois J.a, Grenier C.a, Montes F.a, de Lamotte F.c, Verdeil J.L.a, Courtois B.a, Ahmadi N.a	Positional cloning of the rice male sterility gene ms-IR36, widely used in the inter-crossing phase of recurrent selection schemes	Molecular Breeding	33	555-567	2014		
38544	0	Sharma S.K.a, Singh J.a, Chauhan M.S.a, Krishnamurthy S.L.a b	Multivariate analysis of phenotypic diversity of rice (Oryza sativa) germplasm in North-West India	Indian Journal of Agricultural Sciences	84	295-299	2014		
38545	0	Sahoo B.C.a, Panda S.N.b	Simulation modeling for sizing lined on-farm pond for various crop substitution ratios in rainfed uplands of eastern india	Acta Hortic.	1015	295-306	2014		
38546	24431339	Takahashi H.a, Greenway H.b, Matsumura H.c, Tsutsumi N.d, Nakazono M.a	Rice alcohol dehydrogenase 1 promotes survival and has a major impact on carbohydrate metabolism in the embryo and endosperm when seeds are germinated in partially oxygenated water	Ann. Bot.	113	851-859	2014		
38547	0	Wu H.a, Liu Y.a, He J.a, Liu Y.a, Jiang L.a, Liu L.a, Wang C.a, Cheng X.a, Wan J.a b	Fine mapping of brown planthopper (Nilaparvata lugens St?l) resistance gene Bph28(t) in rice (Oryza sativa L.)	Molecular Breeding	33	909-918	2014	BPH28	Bph28, Bph28(t)
38548	24659905	Xu Q., Saito H., Hirose I., Katsura K., Yoshitake Y., Yokoo T., Tsukiyama T., Teraishi M., Tanisaka T., Okumoto Y.	The effects of the photoperiod-insensitive alleles, se13, hd1 and ghd7, on yield components in rice	Molecular Breeding	33	813-819	2014	SE1,SE13,EF1,GHD7	Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, OsHd1,  Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,Se13, OsHY2, OsGUN3, GUN3, PS13,Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,Ghd2, Ghd7, OsGhd7, OsCCT26, OsCMF8, OsI, Ghd7/Hd4, Hd4, EH7-1/Hd4, Ghd7-0a, EH7-1, EH7/Ghd7, EH7, OsEH7, GLW7.1, OsGLW7.1
38549	0	P?l M.a, Kov?cs V.a, Szalai G.a, So?s V.a, Ma X.b, Liu H.b, Mei H.b, Janda T.a	Salicylic Acid and Abiotic Stress Responses in Rice	Journal of Agronomy and Crop Science	200	1-11	2014		
38550	0	Sheng L., Deng L., Yan H., Zhao Y., Dong Q., Li Q., Li X., Cheng B., Jiang H.	A genome-wide analysis of the AAAP gene family in maize	Journal of Proteomics and Bioinformatics	7	023-033	2014		
38551	24603605	Oszvald M.a b, Tamas L.a, Shewry P.R.b c, Tosi P.b c	The trafficking pathway of a wheat storage protein in transgenic rice endosperm	Ann. Bot.	113	807-815	2014		
38552	0	Longu? D.R.S.a, Galzi-Pinel A.b, Semballa S.a, Zinga I.a, Fargette D.b, Traor? O.c	First report of Rice yellow mottle virus in rice in the Central African Republic	Plant Dis.	98	162	2014		
38553	0	Hou C.X., Zhan Y.H., Jiang D.A., Weng X.Y.	Functional characterization of a new pathogen induced xylanase inhibitor (RIXI) from rice	European Journal of Plant Pathology	138	405-414	2014	CHT3,RIXI ,PR1B	Cht3*, Cht3, Cht-3, CH6, OsChia1c, CHI7, OsCHI11, CHI11, OsPR3, PR3,C10701,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1, OsPR1a, PR1a
38554	23996324	Pandey P., Srivastava R.K., Dubey R.S.	Water deficit and aluminum tolerance are associated with a high antioxidative enzyme capacity in Indica rice seedlings	Protoplasma	251	147-160	2014		
38556	24400898	Plackett A.R.G.a, Ferguson A.C.b, Powers S.J.c, Wanchoo-Kohli A.a, Phillips A.L.a, Wilson Z.A.b, Hedden P.a, Thomas S.G.a	DELLA activity is required for successful pollen development in the Columbia ecotype of Arabidopsis	New Phytologist	201	825-836	2014		
38557	0	Oard J.H., Harrell D.L., Groth D.E., Bearb K.F., White III L.M., Linscombe S.D.	Registration of 'CL152' rice	Journal of Plant Registrations	8	9-12	2014		
38558	24331414	Maejima E.a, Watanabe T.a, Osaki M.a, Wagatsuma T.b	Phosphorus deficiency enhances aluminum tolerance of rice (Oryza sativa) by changing the physicochemical characteristics of root plasma membranes and cell walls	J. Plant Physiol.	171	9-15	2014		
38559	24368504	Shi J., Hu H., Zhang K., Zhang W., Yu Y., Wu Z., WU P.	The paralogous SPX3 and SPX5 genes redundantly modulate Pi homeostasis in rice	J. Exp. Bot.	65	859-870	2014	PT2,miR827,LTN1,SQD2.2,SPX6,IPS1,SPX5,PHR2,SPX3	OsPT2, PTH1-2, OsPht1;2, PHT1;2, OsPHT1;2,miR827a, OsmiR827a, miR827, osa-miR827, osa-MIR827, OsMiR827, miR827b, osa-miR827b, osa-MIR827b,LTN1, OsPHO2, PHO2.1, PHO2.2, PHO2, OsUBC35, UBC35,OsSQD2, SQD2, OsSQD2.2,OsSPX6,OsIPS1,OsSPX5,OsPHR2, Os-PHR2,OsSPX3
38560	24467890	Qian Q., Huang L., Yi R., Wang S., Ding Y.	Enhanced resistance to blast fungus in rice (Oryza sativa L.) by expressing the ribosome-inactivating protein alpha-momorcharin	Plant Science	217-218	1-7	2014		
38561	0	Wang Y.a b, Zhang Q.a b, Zheng T.a, Cui Y.a, Zhang W.b, Xu J.a, Li Z.a	Drought-tolerance QTLs commonly detected in two sets of reciprocal introgression lines in rice	Crop and Pasture Science	65	171-184	2014		
38562	0	Fukuda A.a, Kataoka T.b, Shiratsuchi H.c, Fukushima A.c, Yamaguchi H.d, Mochida H.c, Ogiwara H.d	QTLs for seedling growth of direct seeded rice under submerged and low temperature conditions	Plant Prod. Sci.	17	41-46	2014		
38563	0	Gnyp M.L.a b, Miao Y.a, Yuan F.c, Ustin S.L.d, Yu K.a b, Yao Y.a, Huang S.a b, Bareth G.b	Hyperspectral canopy sensing of paddy rice aboveground biomass at different growth stages	Field Crops Res.	155	42-55	2014		
38564	0	Wei X.a b, Qiao W.a, Yuan N.a, Chen Y.a, Wang R.a, Cao L.a, Zhang W.a, Yang Q.a, Zeng H.b	Domestication and association analysis of Hd1 in Chinese mini-core collections of rice	Genet. Resour. Crop Evol.	61	121-142	2014		
38565	0	Rafii M.Y.a b, Zakiah M.Z.b, Asfaliza R.c, Haifaa I.b, Latif M.A.b, Malek M.A.a	Grain quality performance and heritability estimation in selected F1 rice genotypes	Sains Malays	43	1-7	2014		
38566	24482599	Oliva N.a, Chadha-Mohanty P.a, Poletti S.a, Abrigo E.a, Atienza G.a, Torrizo L.a, Garcia R.a, Due?as Jr. C.a, Poncio M.A.a, Balindong J.a, Manzanilla M.a, Montecillo F.a, Zaidem M.d, Barry G.a, Herv? P.c, Shou H.b, Slamet-Loedin I.H.a	Large-scale production and evaluation of marker-free indica rice IR64 expressing phytoferritin genes	Molecular Breeding	33	23-37	2014		
38567	24486490	Bae H., Kim W.T.	Classification and interaction modes of 40 rice E2 ubiquitin-conjugating enzymes with 17 rice ARM-U-box E3 ubiquitin ligases	Biochem. Biophys. Res. Commun.	444	575-580	2014		
38568	0	Dallagnol L.J.a, Rodrigues F.A.b, Mielli M.V.B.b, Ma J.F.c	Rice grain resistance to brown spot and yield are increased by silicon	Trop Plant Pathol	39	56-63	2014		
38569	0	Sailaja B., Voleti S.R., Subrahmanyam D., Sarla N., Prasanth V.V., Bhadana V.P., Mangrauthia S.K.	Prediction and expression analysis of miRNAs associated with heat stress in oryza sativa	Rice Science	21	3-12	2014		
38570	0	Cho S.H.a, Yoo S.C.a, Zhang H.a, Lim J.H.a, Paek N.C.a b	Rice NARROW LEAF1 Regulates Leaf and Adventitious Root Development	Plant Molecular Biology Reporter	32	270-281	2014		
38571	24474809	Kim H.a, Lee K.a, Hwang H.a, Bhatnagar N.b c, Kim D.Y.a, Yoon I.S.a, Byun M.O.a, Kim S.T.d, Jung K.H.b c, Kim B.G.a	Overexpression of PYL5 in rice enhances drought tolerance, inhibits growth, and modulates gene expression	J. Exp. Bot.	65	453-464	2014	PYL/RCAR5	OsPYL/RCAR5, PYL5, OsPYL5, OsPYL11, PYL11
38572	0	Qiao X., He Y., Wang Z., Li X., Zhang K., Zeng H.	Effect of foliar spray of zinc on chloroplast beta-carbonic anhydrase expression and enzyme activity in rice (Oryza sativa L.) leaves	Acta Physiologiae Plantarum	36	263-272	2014		
38574	24491154	Dixit S., Singh A., Sta Cruz M.T., Maturan P.T., Amante M., Kumar A.	Multiple major QTL lead to stable yield performance of rice cultivars across varying drought intensities	BMC Genet.	15	16	2014		
38575	0	Wu Z.H.a, Yang C.W.b, Yang M.Y.a c	Photosynthesis, photosystem II efficiency, amino acid metabolism and ion distribution in rice (Oryza sativa L.) in response to alkaline stress	Photosynthetica	52	157-160	2014		
38576	0	Zhao F., Zhang Y., Wu Y., Wang T., Ma L., Yang Z., Wei X., Sang X., Ling Y., Wang N., Zhang C., He G.	Morphological and physiological analysis of narrow and striped leaf 1 (nsl1) mutant of rice (Oryza sativa L.) and the gene mapping	Chinese Science Bulletin	59	840-848	2014		
38577	0	Oard J.H., Harrell D.L., Groth D.E., Bearb K.F., White L.M., Linscombe S.D.	Registration of 'CL111' rice	Journal of Plant Registrations	8	5-8	2014		
38578	0	Eizenga G.C.a, Ali M.L.b e, Bryant R.J.a, Yeater K.M.c, McClung A.M.a, McCouch S.R.d	Registration of the Rice Diversity Panel 1 for genomewide association studies	Journal of Plant Registrations	8	109-116	2014		
38579	24498428	Zhang J.a b, Liu X.a, Li S.a, Cheng Z.a, Li C.a	The rice semi-dwarf mutant SD37, caused by a mutation in CYP96B4, plays an important role in the fine-tuning of plant growth	PLoS ONE	9		2014	ORC1,_,SD37,_,CYCB1;1,MCM3,CYCD2;1,EXPB3,_	OsORC1,CDC2,OsCYP96B4, CYP96B4, CYP96B4/SD37, OsDSS1, DSS1, CFL2, OsCFL2, CFL2/OsCYP96B4, BSHT1, OsBSHT1, BSHT1/OsCYP96B4, DDT1, OsDDT1,OsRPA32, RPA32, RPA2A ,CycB1;1, CycB1;os;1, Orysa;CycB1;1, OsCycB1;1, CyclaZm, CYCIaZm, OsCYCIaZm, OsCYCB1;4,OsMCM3,CycD2;1, CYCD2-1, OsCYCD2-1, Orysa;CycD2;1, Orysa;CYCD2;1, Orysa;CycD2;2, OsCYCD2;2, CYCD2;2,OsEXPB3, osaEXPb1.10, EXPb1.10,CDC3
38580	0	Zhao B.a b c, Zhang J.a b c, Dai X.a, Peng L.a, Peng H.a, Huang W.a	Effects of Pomacea canaliculata on aquatic macrophyte community in paddy fields	Shengtai Xuebao/ Acta Ecologica Sinica	34	907-915	2014		
38581	0	Lundy M.E.a, Hill J.E.a, van Kessel C.a, Owen D.A.a, Pedroso R.M.a, Boddy L.G.b, Fischer A.J.a, Linquist B.A.a	Site-specific, real-time temperatures improve the accuracy of weed emergence predictions in direct-seeded rice systems	Agric Syst	123	12-21	2014		
38582	24383761	Chiara B.a b, Daniela C.a, Rosaria P.a, Alberto G.b, Paolo B.b, Simona U.b, Gabriele O.a, Francesca D.b, Elisabetta L.c, Luigi C.a, Giampiero V.a b	Improvement of marker-based predictability of apparent amylose content in japonica rice through GBSSI allele mining	Rice (N Y)	7	1	2014		
38583	0	Cui S.Y.a b, Xue J.F.c, Chen F.c, Tang W.G.d, Zhang H.L.c, Lal R.e	Tillage effects on nitrogen leaching and nitrous oxide emission from double-cropped paddy fields	Agron J	106	15-23	2014		
38584	24323250	Azevedo C.C.a, Azevedo J.a b, Os?rio H.c d, Vasconcelos V.a e, Campos A.a	Early physiological and biochemical responses of rice seedlings to low concentration of microcystin-LR	Ecotoxicology	23	107-121	2014		
38585	24511289	Lian G.a, Ding Z.a b c, Wang Q.b, Zhang D.a, Xu J.a	Origins and evolution of WUSCHEL-related homeobox protein family in plant kingdom	The Scientific World Journal	2014	534140	2014		
38586	0	Sunder S., Singh R., Dodan D.S.	Management of bakanae disease of rice caused by Fusarium moniliforme	Indian Journal of Agricultural Sciences	84	224-228	2014		
38587	24656333	Corr?a A.a b, Cruz C.b, P?rez-Tienda J.a, Ferrol N.a	Shedding light onto nutrient responses of arbuscular mycorrhizal plants: Nutrient interactions may lead to unpredicted outcomes of the symbiosis	Plant Science	221-222	29-41	2014		
38588	0	Muthukumaran M., Vijaya Bhaskara Rao A.	Toxic effects of aluminum on certain protein metabolic parameters in two rice varieties during leaf senescence	Research Journal of Pharmaceutical, Biological and Chemical Sciences	5	598-604	2014		
38590	24566471	Chen X.a b, Lin S.a c, Liu Q.a, Huang J.a, Zhang W.a, Lin J.a, Wang Y.a, Ke Y.a, He H.a	Expression and interaction of small heat shock proteins (sHsps) in rice in response to heat stress	Biochimica et Biophysica Acta - Proteins and Proteomics	1844	818-828	2014		
38591	24316011	Ren C.G.a, Li X.a, Liu X.L.a c, Wei X.D.a, Dai C.C.b	Hydrogen peroxide regulated photosynthesis in C4-PEPC transgenic rice	Plant Physiology and Biochemistry	74	218-229	2014		
38592	24335508	Li Y.a, Lu Y.G.a, Shi Y.a, Wu L.b, Xu Y.J.a, Huang F.a, Guo X.Y.d, Zhang Y.a, Fan J.a, Zhao J.Q.a, Zhang H.Y.a, Xu P.Z.a, Zhou J.M.c, Wu X.J.a, Wang P.R.a, Wang W.M.a	Multiple rice MicroRNAs are involved in immunity against the blast fungus Magnaporthe oryzae	Plant Physiol.	164	1077-1092	2014		
38593	24309107	Fang H.a b, Liu X.c, Thorn G.a, Duan J.d, Tian L.a b	Expression analysis of histone acetyltransferases in rice under drought stress	Biochem. Biophys. Res. Commun.	443	400-405	2014	HAF701,HAG703,HAM701,HAC703	OsHAF701, OsBrd7, Brd7,OsHAG703, OsELP3, ELP3,OsHAM701, OsMOF, MOF,OsHAC703, OsKIX_2, OsHAC1
38595	0	Sartori G.M.S., Marchesan E., Azevedo C.F., Coelho L.L., de Oliveira M.L.	Germination of irrigated rice and red rice biotypes under different temperatures [Germina??o de arroz irrigado e de bi?tipos de arroz-vermelho submetidas a diferentes temperaturas]	Revista Ciencia Agronomica	45	319-326	2014		
38596	0	Yang J.W.a b, Fu J.X.a, Li J.a, Cheng X.L.a b, Li F.a, Dong J.F.a, Liu Z.L.a, Zhuang C.X.a	A Novel Co-immunoprecipitation Protocol Based on Protoplast Transient Gene Expression for Studying protein-protein Interactions in Rice	Plant Molecular Biology Reporter	32	153-161	2014		
38597	0	Kumar R.a, Pandey D.S.a b, Singh V.P.a b	Wheat (Triticum aestivum) productivity under different tillage practices and legume options in rice (Oryza sativa) and wheat cropping sequence	Indian Journal of Agricultural Sciences	84	101-106	2014		
38598	0	Yasmin S., Mensuali-Sodi A., Perata P., Pucciariello C.	Ethylene influences in vitro regeneration frequency in the FR13A rice harbouring the SUB1A gene	Plant Growth Regul.	72	97-103	2014		
38599	0	Awan M.I.a b, Bastiaans L.a, van Oort P.a, Ahmad R.c, Ashraf M.Y.c, Meinke H.a d	Nitrogen use and crop performance of rice under aerobic conditions in a semiarid subtropical environment	Agron J	106	199-211	2014		
38602	0	Khare T.R.a, Sharma R.a b, Singh S.B.a	Evaluation of the performance of penoxsulam for weed management in directseeded and transplanted rice (Oryza sativa)	Indian Journal of Agricultural Sciences	84	154-157	2014		
38604	0	Fageria N.K.a, Carvalho M.C.S.a, dos Santos F.C.b	ROOT GROWTH OF UPLAND RICE GENOTYPES AS INFLUENCED BY NITROGEN FERTILIZATION	J Plant Nutr	37	95-106	2014		
38605	0	Xu J.Z.a b, Yu Y.M.b, Peng S.Z.a, Yang S.H.a, Liao L.X.b	A modified nonrectangular hyperbola equation for photosynthetic light-response curves of leaves with different nitrogen status	Photosynthetica	52	117-123	2014		
38606	0	Htwe N.N.a, Ling H.C.c, Zaman F.Q.d, Maziah M.a b	Plant genetic transformation efficiency of selected Malaysian rice based on selectable marker gene (hptII)	Pakistan Journal of Biological Sciences	17	472-481	2014		
38607	24393121	Sui Y.a b, Li B.a, Shi J.a, Chen M.a	Genomic, regulatory and epigenetic mechanisms underlying duplicated gene evolution in the natural allotetraploid Oryza minuta	BMC Genomics	15	11	2014		
38608	0	Jiang Y.a, Pan S.b, Cai M.a, Li C.a, Zhan M.a, Wang J.a, Mohamed I.a c, Cao C.a	Assessment of yield advantages of Bt-MH63 with cry1C* or cry2A* genes over MH63 (Oryza sativa L.) under different pest control modes	Field Crops Res.	155	153-158	2014		
38609	24485312	Gashaw A.a, Theerawitaya C.b, Samphumphuang T.b, Cha-um S.b, Supaibulwatana K.a	CPPU elevates photosynthetic abilities, growth performances and yield traits in salt stressed rice (Oryza sativa L. spp. indica) via free proline and sugar accumulation	Pestic Biochem Physiol	108	27-33	2014		
38610	0	Song Z.a b c, Wang H.a b, Strong P.J.d, Guo F.a	Phytolith carbon sequestration in China's croplands	European Journal of Agronomy	53	10-15	2014		
38611	0	Hao Z.a, Wang L.a, Li C.b, Huang F.b, Tao R.a	Comparison between the resistance to blast in panicles exserted from the main culm and primary tillers as measured in six rice varieties	European Journal of Plant Pathology	138	9-14	2014		
38612	0	Glaubitz U.a, Li X.a, K?hl K.I.a, Van Dongen J.T.a b, Hincha D.K.a, Zuther E.a	Differential physiological responses of different rice (Oryza sativa) cultivars to elevated night temperature during vegetative growth	Functional Plant Biology	41	437-448	2014		
38613	24601753	Kumar S.P., Pandya H.A., Jasrai Y.T.	A computational model for non-conserved mature miRNAs from the rice genome	SAR QSAR Environ Res	25	205-220	2014		
38614	0	Wu C., Mo J., Xue S., Luo C.	Characteristics of arsenic (As) tolerance and accumulation in rice (Oryza sativa L.) genotypes with different radial oxygen loss	Shengtai Xuebao/ Acta Ecologica Sinica	34	807-813	2014		
38615	0	Xie H.a b, Wang J.a, Qian M.a, Li N.a, Zhu Y.a, Li S.a	Mitotype-specific sequences related to cytoplasmic male sterility in Oryza species	Molecular Breeding	33	803-811	2014		
38616	0	Jagadish K.S.V.a b, Craufurd P.b c, Shi W.a d, Oane R.a	A phenotypic marker for quantifying heat stress impact during microsporogenesis in rice (Oryza sativa L.)	Functional Plant Biology	41	48-55	2014		
38618	0	Li G.a b, Zhang J.b, Yang C.b c, Song Y.b, Zheng C.d, Liu Z.b, Wang S.a b, Tang S.a, Ding Y.a	YIELD AND YIELD COMPONENTS OF HYBRID RICE AS INFLUENCED BY NITROGEN FERTILIZATION AT DIFFERENT ECO-SITES	J Plant Nutr	37	244-258	2014		
38619	24335509	Matsushima R.a, Maekawa M.a, Kusano M.b, Kondo H.a, Fujita N.c, Kawagoe Y.d, Sakamoto W.a	Amyloplast-localized SUBSTANDARD STARCH GRAIN4 protein influences the size of starch grains in rice endosperm	Plant Physiol.	164	623-636	2014	SSG4	OsSSG4
38621	24655385	Bhoomika K., Pyngrope S., Dubey R.S.	Effect of aluminum on protein oxidation, non-protein thiols and protease activity in seedlings of rice cultivars differing in aluminum tolerance	J. Plant Physiol.	171	497-508	2014		
38622	0	Dufey I., Gheysens S., Ingabire A., Lutts S., Bertin P.	Silicon Application in Cultivated Rices (Oryza sativa L and Oryza glaberrima Steud) Alleviates Iron Toxicity Symptoms Through the Reduction in Iron Concentration in the Leaf Tissue	Journal of Agronomy and Crop Science	200	132-142	2014		
38623	0	Chauhan B.S.a, Abeysekera A.S.K.b, Wickramarathe M.S.b, Kulatunga S.D.b, Wickrama U.B.b	Effect of rice establishment methods on weedy rice (Oryza sativa L.) infestation and grain yield of cultivated rice (O. sativa L.) in Sri Lanka	Crop Protection	55	42-49	2014		
38624	24579076	Hakim M.A.a b, Juraimi A.S.c, Hanafi M.M.a, Ismail M.R.c d, Selamat A.c, Rafii M.Y.c d, Latif M.A.c e	Biochemical and anatomical changes and yield reduction in rice (Oryza sativa L.) under varied salinity regimes	Biomed Res Int	2014	208584	2014		
38625	24412201	Wang Z.Q.a, Xu X.Y.a, Gong Q.Q.a, Xie C.b, Fan W.a, Yang J.L.a, Lin Q.S.c, Zheng S.J.a	Root proteome of rice studied by iTRAQ provides integrated insight into aluminum stress tolerance mechanisms in plants	J Proteomics	98	189-205	2014		
38626	0	Mawlong I.a, Ali K.a, Kurup D.a, Yadav S.b, Tyagi A.a	Isolation and characterization of an AP2/ERF-type drought stress inducible transcription factor encoding gene from rice	J. Plant Biochem. Biotechnol.	23	42-51	2014		
38627	0	Keshavarz Hedayati A.a, Alami M.a, Motamed Zadegan A.b, Maghsoudlou Y.a, Ghorbani M.a, Daraei Garmakhany A.c, Hassan Mossavi S.d	Functional and physicochemical properties of Iranian rice bran	Minerva Biotecnol	26	31-40	2014		
38628	0	Goufo P.a, Pereira J.a b, Figueiredo N.c, Oliveira M.B.P.P.d, Carranca C.c e, Rosa E.A.S.a, Trindade H.a	Effect of elevated carbon dioxide (CO2) on phenolic acids, flavonoids, tocopherols, tocotrienols, gamma-oryzanol and antioxidant capacities of rice (Oryza sativa L.)	J. Cereal Sci.	59	15-24	2014		
38629	24388528	Jiang Q.a, Mei J.a, Gong X.D.a, Xu J.L.b, Zhang J.H.c, Teng S.c, Lin D.Z.a, Dong Y.J.a	Importance of the rice tcd9 encoding alpha subunit of chaperonin protein 60 (Cpn60alpha) for the chloroplast development during the early leaf stage	Plant Science	215-216	172-179	2014	RPOTP,TCD9	OsRpo Tp, OsRpoTp, NEP, RpoTp, rpoTP2,OsCPn60alpha3, OsCPn60a3
38631	0	Chalmardi Z.K., Abdolzadeh A., Sadeghipour H.R.	Silicon nutrition potentiates the antioxidant metabolism of rice plants under iron toxicity	Acta Physiologiae Plantarum	36	493-502	2014		
38632	24361403	Wang B.a b, Shahzad M.F.a b, Zhang Z.a b, Sun H.a b, Han P.a b, Li F.a b, Han Z.a b	Genome-wide analysis reveals the expansion of Cytochrome P450 genes associated with xenobiotic metabolism in rice striped stem borer, Chilo suppressalis	Biochem. Biophys. Res. Commun.	443	756-760	2014		
38633	0	Yadav S.K.a b, Babu S.a c, Yadav M.K.a d, Singh Y.a e, Singh K.a f	Profitability of high value crops with organic nitrogen sources under rice (Oryza sativa) based cropping sequence	Indian Journal of Agricultural Sciences	84	343-348	2014		
38634	24388867	Chen Z.a, Dai H.a, Liu Z.a, Zhang L.a, Pang J.a, Ou J.b, Yang D.a b	Quantitation of the residual DNA from rice-derived recombinant human serum albumin	Anal. Biochem.	450	4-10	2014		
38635	0	Bhattacharyya P.a, Roy K.S.a, Dash P.K.a, Neogi S.a, Shahid M.a, Nayak A.K.a, Raja R.a, Karthikeyan S.b, Balachandar D.b, Rao K.S.a	Effect of elevated carbon dioxide and temperature on phosphorus uptake in tropical flooded rice (Oryza sativa L.)	European Journal of Agronomy	53	28-37	2014		
38636	24380819	Youngblood B.A.a, Alfano R.b, Pettit S.C.b, Zhang D.c, Dallmann H.G.c, Huang N.c, MacDonald C.C.a	Application of recombinant human leukemia inhibitory factor (LIF) produced in rice (Oryza sativa L.) for maintenance of mouse embryonic stem cells	J. Biotechnol.	172	67-72	2014		
38638	0	Xia W.a, Liu Z.a, Yang Y.a, Xiao Y.a, Mason A.S.b, Zhao S.a, Ma Z.c	Selection of reference genes for quantitative real-time PCR in Cocos nucifera during abiotic stress	Botany	92	179-186	2014		
38639	0	Fageria N.K.a, de Morais O.P.a, dos Santos A.B.a, Vasconcelos M.J.b	Phosphorus Use Efficiency in Upland Rice Genotypes Under Field Conditions	J Plant Nutr	37	633-642	2014		
38640	11244110	D R Lisch, M Freeling, R J Langham, M Y Choy	Mutator transposase is widespread in the grasses.	Plant Physiol.	125(3)	1293-303	2001	RMU1-IR36*,RMU1-A23*,_	RMu1-IR36*, RMu1-IR36,RMu1-A23*, RMu1-A23,
38641	9868931	S Yoshida, K Tamaki, K Watanabe, M Fujino, C Nakamura	A maize MuDR-like element expressed in rice callus subcultured with proline.	Hereditas	129(1)	95-9	1998	_,_	Os-MuDR,Os-MURA
38642	11847307	Azevedo C., Sadanandom A., Kitagawa K., Freialdenhoven A., Shirasu K., Paul Schulze-Lefert	The Rar1 interactor SGT1, an essential component of R gene-triggered disease resistance.	Science	295(5562)	2073-6	2002	SGT1	OsSgt1, OsSGT1, Os SGT1
38643	23671845	Rawal H.C., Singh N.K., Sharma T.R.	Conservation, divergence, and genome-wide distribution of PAL and POX A gene families in plants	International Journal of Genomics	2013	678969	2013	_,_,PAL1,PAL1,_,PAL,_,_,_	OsPAL07, OsPAL, PAL07, OsPAL6, PAL6, PAL1, OsPAL7, PAL7,OsPAL05, PAL05, OsPAL3, PAL5, PAL3, OsPAL2;3, PAL2;3, OsPAL2-1, PAL2-1,OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6,OsPAL, Pal1*, Pal1, PAL, Pal_1, PalI, PAL2, OsPAL01, PAL01, OSPAL, CP-1, GP-1, OsPAL1, PAL3, OsPAL3,OsPAL03, OsPAL9, TAM1, OsTAM1, TAM, OsTAM,OsPAL, OsPAL08, PAL2, GP-28, GP28, PAL08, OsPAL2, OsPAL8, PAL8,OsPAL04, PAL04, PAL, OsPAL7, PAL7,PAL03, OsPAL8, PAL8 ,OsPAL02, PAL02, OsPAL5, PAL5, OsPAL2. PAL2, OsPAL1
38644	24884360	Wu Z., Gui S., Wang S., Ding Y.	Molecular evolution and functional characterisation of an ancient phenylalanine ammonia-lyase gene (NnPAL1) from Nelumbo nucifera: novel insight into the evolution of the PAL family in angiosperms.	BMC Evol. Biol.	14	100	2014	_,PAL,_,_,_,PAL1,_,PAL1,_	OsPAL05, PAL05, OsPAL3, PAL5, PAL3, OsPAL2;3, PAL2;3, OsPAL2-1, PAL2-1,OsPAL, OsPAL08, PAL2, GP-28, GP28, PAL08, OsPAL2, OsPAL8, PAL8,OsPAL03, OsPAL9, TAM1, OsTAM1, TAM, OsTAM,OsPAL04, PAL04, PAL, OsPAL7, PAL7,OsPAL07, OsPAL, PAL07, OsPAL6, PAL6, PAL1, OsPAL7, PAL7,OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6,PAL03, OsPAL8, PAL8 ,OsPAL, Pal1*, Pal1, PAL, Pal_1, PalI, PAL2, OsPAL01, PAL01, OSPAL, CP-1, GP-1, OsPAL1, PAL3, OsPAL3,OsPAL02, PAL02, OsPAL5, PAL5, OsPAL2. PAL2, OsPAL1
38645	20862311	Rebecca S Bart, Chern M., Miguel E Vega-S?nchez, Canlas P., Pamela C Ronald	Rice Snl6, a cinnamoyl-CoA reductase-like gene family member, is required for NH1-mediated immunity to Xanthomonas oryzae pv. oryzae.	PLoS Genet.	6(9)	e1001123	2010	SNL6,XA21,JIOSPR10,NH1,4CL3,PR10B,PAL	Snl6, OsSNL6, OsCCR2, CCR2 ,Xa21*, Xa21, OsXA21,JIOsPR10, OsPR10, PR10, OsJiPR10, JiPR10, OsPR10c, PR10c,OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2, DLN5, OsDLN5,  OsBTBA1, BTBA1,Os4CL3, Os4CL2, Os4CL, 4CL2, 4CL,RPR10b, PR-10b, PR10b, PBZ1, PBZ-1, OsPBZc, OsPR10b, BetV, OsBetV,OsPAL, OsPAL08, PAL2, GP-28, GP28, PAL08, OsPAL2, OsPAL8, PAL8
38646	11141171	I Blilou, J A Ocampo, J M Garc?a-Garrido	Induction of LTP (lipid transfer protein) and PAL (phenylalanine ammonia-lyase) gene expression in rice roots colonized by the arbuscular mycorrhizal fungus Glomus mosseae.	J. Exp. Bot.	51(353)	1969-77	2000	PAL1	OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6
38647	10875920	Z He, Z Y Wang, J Li, Q Zhu, C Lamb, P Ronald, J Chory	Perception of brassinosteroids by the extracellular domain of the receptor kinase BRI1.	Science	288(5475)	2360-3	2000	XA21,RCH10,PAL1	Xa21*, Xa21, OsXA21,RCH10*, Cht13, Cht12, Rcht2,OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6
38648	7580258	Q Zhu, T Dabi, C Lamb	TATA box and initiator functions in the accurate transcription of a plant minimal promoter in vitro.	Plant Cell	7(10)	1681-9	1995	PAL1	OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6
38649	7599645	Q Zhu, J Chappell, S A Hedrick, C Lamb	Accurate in vitro transcription from circularized plasmid templates by plant whole cell extracts.	Plant J.	7(6)	1021-30	1995	PAL1	OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6
38650	9112783	J D Everard, C Cantini, R Grumet, J Plummer, W H Loescher	Molecular cloning of mannose-6-phosphate reductase and its developmental expression in celery.	Plant Physiol.	113(4)	1427-35	1997	M6PR	OsM6PR1, M6PR1, OsM6PR2, M6PR2, OsM6PR, OsS6PDH, S6PDH, OsAKR4-4, AKR4-4
38651	11169193	K Turcotte, S Srinivasan, T Bureau	Survey of transposable elements from rice genomic sequences.	Plant J.	25(2)	169-79	2001	STOW-I,STOW-II,STOW-III,STOW-IV,STOW-V,STOW-VI,STOW-VII,STOW-VIII,STOW-IX,STOW-X,_,_,BASHO,PCF2	Stow-I,Stow-II,Stow-III,Stow-IV,Stow-V,Stow-VI,Stow-VII,Stow-VIII,Stow-IX,Stow-X,MULE-I,MULE-IV,Basho,OsPCF2
38652	18620041	Yang Z., Zhou Y., Wang X., Gu S., YU J., Liang G., Yan C., Xu C.	Genomewide comparative phylogenetic and molecular evolutionary analysis of tubby-like protein family in Arabidopsis, rice, and poplar.	Genomics	92(4)	246-53	2008	TLP4,TLP11,TLP2,TLP3,TLP13,TLP10,TLP6,TLP9,TLP7,TLP14,TLP8,TLP12,TLP1,TLP5	OsTLP13, TLP13, OsTLP4,OsTLP7, TLP7, OsTLP11, OsFbox398, Os_F0421,  OsFBT11, FBT11,OsTLP12, OsTLP2, OsFbox039, OsFbox39, Os_F0683,  OsFBT2, FBT2,OsTLP5, TLP5, OsTLP3, OsFbox050, OsFbox50, Os_F0396,  OsFBT3, FBT3,OsTLP6, TLP6, OsTLP13, OsFbox569, Os_F0461,  OsFBT13, FBT13,OsTLP11, TLP11, OsTLP10, OsFbox278, Os_F0631,  OsFBT10, FBT10,OsTLP14, TLP14, OsTLP6, OsFbox139, Os_F0681,  OsFBT5, FBT5,OsTLP10, TLP10, OsTLP10a, OsTLP10b, OsTLP9, OsFbox267, Os_F0560,  OsFBT9, FBT9,OsTLP3, TLP3, OsTLP7, OsFbox240, Os_F0401,  OsFBT6, FBT6,OsTLP4, TLP4, OsTLP14, OsFbox645, Os_F0315,  OsFBT14, FBT14,OsTLP1, OsTLP1a, OsTLP1b, OsTLP1c, OsTLP8, OsFbox259, Os_F0415,  OsFBT7, FBT7,OsTLP2, OsTLP2a, OsTLP2b, OsTLP12, OsFbox402, Os_F0479,  OsFBT12, FBT12,OsTLP9, TLP9, OsTLP9a, OsTLP9b, OsTLP9c, OsTLP1, OsFbox034, OsFbox34, Os_F0675,  OsFBT1, FBT1,OsTLP8, LP8, OsTLP8a, OsTLP8b, OsTLP8c, OsTLP8d, OsTLP5, OsFbox107, Os_F0446,  OsFBT4, FBT4
38653	18775973	Yang X., Udaya C Kalluri, Jawdy S., Lee E Gunter, Yin T., Timothy J Tschaplinski, David J Weston, Ranjan P., Gerald A Tuskan	The F-box gene family is expanded in herbaceous annual plants relative to woody perennial plants.	Plant Physiol.	148(3)	1189-200	2008	EP3,_,FBOX33,_,TLP12,_,BRT1,_,_,_,FBOX316,_,_,_,_,_,_,_,_,_,_,_,_,_,_,FBOX130,ZTL1,TLP2,TLP3,TLP8,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,FBOX314,FBOX2,COI1B,FBOX206,TLP13,FBOX58,FBOX516,TLP10,TLP6,TLP11,TLP5,TLP9,TLP7,TLP14,TLP1,WCR1,_,_,_,_,_,_,_,_,_,_,_,_,ZTL2,_,_,SAF,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,TIR1,FKF1,_,APO1,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,FBOX394,FBOX349,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,LC4,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,FBOX396,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,FBOX11,_,_,_,_,_,_,_,FBOX291,_,_,_,FBOX72,FBOX6,_,_,_	EP3/LP, LP, OsLP, OsFbox076, OsFbox76, Os_F0106, OsEP3,  OsFBK5, FBK5,OsFbox672, Os_F0707,  OsFBX458, FBX458,  OsFBX459, FBX459,OsFbox033, OsFbox33, Fbox33, Os_F0114, OsFBK1, FBK1 ,  OsFBK1, FBK1,OsFbox165, Os_F0229, OsFbox166, Os_F0438,  OsFBX105, FBX105,  OsFBX106, FBX106,OsTLP2, OsTLP2a, OsTLP2b, OsTLP12, OsFbox402, Os_F0479,  OsFBT12, FBT12,OsWD40-184, OsFbox571, Os_F0380,  OsFBW2, FBW2,OsFbox189, Os_F0133,  OsFBX125, FBX125, OsBRT1,OsFbox592, Os_F0128, Fbox-4,  OsFBX417, FBX417,OsFbox509, Os_F0258, OsADF, ADF,  OsFBX345, FBX345,OsKMD1, OsFbox074, OsFbox74, Os_F0323,  OsFBK4, FBK4,OsFbox316, Fbox316, Os_F0624, OsEBF1, EBF1,  OsFBL30, FBL30,OsWD40-110, OsFbox233, Os_F0069,  OsFBW1, FBW1,OsFbox490, Os_F0091,OsFBX270, OsKIX_5, OsFbox419, Os_F0547, OsEnS-118,  OsFBX270, FBX270,OsFbox141, Os_F0122, OsFBX86, FBX86,OsFbox304, Os_F0494,  OsFBX192, FBX192,OsFbox502, Os_F0060,OsFBX234, OsFbox369, Os_F0191,  OsFBX234, FBX234,OsFbox003, OsFbox3, Os_F0209, OsFBX3,  OsFBX3, FBX3,OsFbox004, OsFbox4, Os_F0387,  OsFBDUF1, FBDUF1,OsFbox012, OsFbox12, Os_F0539, OsFBX8,OsFbox008, OsFbox8, Os_F0329,  OsFBDUF3, FBDUF3,JMJ711, OsFbox149, Os_F0347, DLN88, OsDLN88,  OsFBO14, FBO14,OsFbox009, OsFbox9, Os_F0616,  OsFBDUF4, FBDUF4,OsFbox017, OsFbox17, Os_F0392,  OsFBX14, FBX14,OsFBK12, OsFbox130, Os_F0642,  OsFBK12, FBK12,OsZTL1, OsFbox066, OsFbox66, Os_F0484, OsLKP2, LKP2,  OsFBO8, FBO8,OsTLP12, OsTLP2, OsFbox039, OsFbox39, Os_F0683,  OsFBT2, FBT2,OsTLP5, TLP5, OsTLP3, OsFbox050, OsFbox50, Os_F0396,  OsFBT3, FBT3,OsTLP1, OsTLP1a, OsTLP1b, OsTLP1c, OsTLP8, OsFbox259, Os_F0415,  OsFBT7, FBT7,OsFbox018, OsFbox18, Os_F0259,  OsFBX15, FBX15,OsFbox020, OsFbox20, Os_F0674,  OsFBX16, FBX16,OsFbox021, OsFbox21, Os_F0117,OsFbox022, OsFbox22, Os_F0366,  OsFBD2, FBD2,OsFbox024, OsFbox24, Os_F0087,OsFbox027, OsFbox27, Os_F0595,  OsFBL1, FBL1,OsRALyase, OsFbox090, OsFbox90, Os_F0337,  OsFBO11, FBO11,OsKMD3, OsFbox096, OsFbox96, Os_F0169,  OsFBK8, FBK8,MAIF1, OsFbox104, Os_F0528,  OsFBDUF13, FBDUF13,OsDRF1, OsFbox209, Os_F0001,  OsFBX133, FBX133,OsFbox594, Os_F0295, Fbox-1,  OsFBX419, FBX419,OsFBX283, OsKIX_6, OsFbox434, Os_F0157,  OsFBX283, FBX283,OsFBX289, OsKIX_7, OsFbox442, Os_F0407, OsEnS-121,  OsFBX289, FBX289,OsFbox591, Os_F0435, Fbox-5,  OsFBX416, FBX416,OsKMD4, OsFbox596, Os_F0436,  OsFBK25, FBK25,JMJ710, OsFbox611, Os_F0574,  OsFBO15, FBO15,OsFbox013, OsFbox13, Os_F0590, OsFBX10,  OsFBX10, FBX10,OsFbox014, OsFbox14, Os_F0467, OsFBX11,  OsFBX11, FBX11,OsFbox015, OsFbox15, Os_F0481, OsFBX12,  OsFBX12, FBX12,OsFbox016, OsFbox16, Os_F0471, OsFBX13,  OsFBX13, FBX13,OsFbox026, OsFbox26, Os_F0242,  OsFBX18, FBX18,OsFbox028, OsFbox28, Os_F0158,  OsFBL2, FBL2,OsFbox032, OsFbox32, Os_F0271,  OsFBX21, FBX21,OsFbox040, OsFbox40, Os_F0476,  OsFBX26, FBX26,OsFbox029, OsFbox29, Os_F0384,  OsFBX482, FBX482,OsFbox031, OsFbox31, Os_F0326,  OsFBX20, FBX20,OsFbox030, OsFbox30, Os_F0577,  OsFBX19, FBX19,OsFbox035, OsFbox35, Os_F0556,  OsFBX22, FBX22,OsFbox036, OsFbox36, Os_F0051,  OsFBX23, FBX23,OsFbox037, OsFbox37, Os_F0332,  OsFBX24, FBX24,OsFbox038, OsFbox38, Os_F0519,OsFbox041, OsFbox41, Os_F0730,OsFbox042, OsFbox42, Os_F0608,OsFbox043, OsFbox43, Os_F0563,  OsFBDUF8, FBDUF8,OsFbox044, OsFbox44, Os_F0491,  OsFBL3, FBL3,OsFbox046, OsFbox46, Os_F0609,  OsFBX28, FBX28,OsFbox047, OsFbox47, Os_F0754,  OsFBX29, FBX29,OsFbox048, OsFbox48, Os_F0202,  OsFBX30, FBX30,OsFbox049, OsFbox49, Os_F0364,  OsFBL5, FBL5,OsFbox051, OsFbox51, Os_F0330,  OsFBX31, FBX31,OsFbox054, OsFbox54, Os_F0420,OsFbox055, OsFbox55, Os_F0463,  OsFBDUF10, FBDUF10,OsFbox056, OsFbox56, Os_F0469,  OsFBX33, FBX33,OsFbox057, OsFbox57, Os_F0570,  OsFBDUF11, FBDUF11,OsFbox059, OsFbox59, Os_F0692,  OsFBL6, FBL6,OsFbox060, OsFbox60, Os_F0125,  OsFBK2, FBK2,OsFbox061, OsFbox61, Os_F0473,  OsFBDUF12, FBDUF12,OsFbox062, OsFbox62, Os_F0282,  OsFBX34, FBX34,OsFbox063, OsFbox63, Os_F0090,  OsFBX35, FBX35,OsFbox064, OsFbox64, Os_F0285,  OsFBX36, FBX36,OsFbox065, OsFbox65, Os_F0311,  OsFBX37, FBX37,OsFbox068, OsFbox68, Os_F0346,  OsFBLD1, FBLD1,OsFbox069, OsFbox69, Os_F0227,  OsFBD6, FBD6,OsFbox070, OsFbox70, Os_F0151,  OsFBX39, FBX39,OsFbox071, OsFbox71, Os_F0306,  OsFBA1, FBA1,OsFbox045, OsFbox45, Os_F0307,  OsFBX27, FBX27,OsFbox073, OsFbox73, Os_F0359,  OsFBK3, FBK3,OsFbox075, OsFbox75, Os_F0514,  OsFBX40, FBX40,OsFbox077, OsFbox77, Os_F0558,OsFbox078, OsFbox78, Os_F0445,OsFbox079, OsFbox79, Os_F0641,  OsFBX43, FBX43,OsKMD2, KMD2, OsFbox314, Fbox314, Os_F0507, OsFBK16, FBK16,OsFbox002, OsFbox2, OsH2B.6, H2B.6,OsCOI1b, COI1b, OsCOI1H, COI1H, OsFbox260, Fbox260, Os_F0646,  OsFBL23, FBL23, OsCOl-1, COl-1,OsAFB2, ABF2, OsAFB2-1, OsAFB2-2, OsFbox206, Os_F0492, OsTIR1, TIR1,  OsFBL16, FBL16,OsTLP6, TLP6, OsTLP13, OsFbox569, Os_F0461,  OsFBT13, FBT13,OsFbox058, OsFbox58, Os_F0591, DLN37, OsDLN37, CHR707, OsCHR707,  OsFBO7, FBO7,OsFbx352, OsFbox516, Fbx352, Fbox516, Os_F0046,  OsFBX352, FBX352,OsTLP11, TLP11, OsTLP10, OsFbox278, Os_F0631,  OsFBT10, FBT10,OsTLP14, TLP14, OsTLP6, OsFbox139, Os_F0681,  OsFBT5, FBT5,OsTLP7, TLP7, OsTLP11, OsFbox398, Os_F0421,  OsFBT11, FBT11,OsTLP8, LP8, OsTLP8a, OsTLP8b, OsTLP8c, OsTLP8d, OsTLP5, OsFbox107, Os_F0446,  OsFBT4, FBT4,OsTLP10, TLP10, OsTLP10a, OsTLP10b, OsTLP9, OsFbox267, Os_F0560,  OsFBT9, FBT9,OsTLP3, TLP3, OsTLP7, OsFbox240, Os_F0401,  OsFBT6, FBT6,OsTLP4, TLP4, OsTLP14, OsFbox645, Os_F0315,  OsFBT14, FBT14,OsTLP9, TLP9, OsTLP9a, OsTLP9b, OsTLP9c, OsTLP1, OsFbox034, OsFbox34, Os_F0675,  OsFBT1, FBT1,OsFbox052, OsFbox52, Os_F0755, OsWCR1,  OsFBO2, FBO2,OsFbox080, OsFbox80, Os_F0533,  OsFBX44, FBX44,OsFbox081, OsFbox81, Os_F0375,  OsFBX45, FBX45,OsFbox082, OsFbox82, Os_F0509,  OsFBX46, FBX46,OsFbox083, OsFbox83, Os_F0360,  OsFBX47, FBX47,OsFbox084, OsFbox84, Os_F0452,  OsFBK6, FBK6,OsFbox086, OsFbox86, Os_F0482,  OsFBX48, FBX48,OsFbox087, OsFbox87, Os_F0536,  OsFBL8, FBL8,OsFbox088, OsFbox88, Os_F0475,  OsFBX49, FBX49,OsFbox091, OsFbox91, Os_F0517,  OsFBK7, FBK7,OsFbox092, OsFbox92, Os_F0704,  OsFBX51, FBX51,OsFbox093, OsFbox93, Os_F0270,  OsFBD7, FBD7,OsFbox094, OsFbox94, Os_F0336,  OsFBL9, FBL9,OsZTL2, OsFbox325, Os_F0374, ZTL1 ,  OsFBO9, FBO9,OsFbox023, OsFbox23, Os_F0211, OsSTA20,  OsFBD3, FBD3,OsFbox095, OsFbox95, Os_F0274, OsSTA64,  OsFBX52, FBX52,SaF, OsFbox019, OsFbox19, Os_F0070,  OsFBD1, FBD1,OsFbox097, OsFbox97, Os_F0402,  OsFBX53, FBX53,OsFbox098, OsFbox98, Os_F0174,  OsFBK9, FBK9,OsFbox099, OsFbox99, Os_F0180,  OsFBX466, FBX466,OsFbox101, Os_F0678,OsFbox102, Os_F0177,  OsFBO12, FBO12,OsFbox103, Os_F0039,  OsFBX57, FBX57,OsFbox105, Os_F0549,  OsFBX58, FBX58,OsFbox106, Os_F0496,  OsFBD8, FBD8,OsFbox108, Os_F0236,  OsFBX60, FBX60,OsFbox110, Os_F0551,  OsFBX61, FBX61,OsFbox109, Os_F0628,  OsFBK10, FBK10,OsFbox111, Os_F0005,  OsFBX62, FBX62,OsFbox112, Os_F0657,OsFbox113, Os_F0234,  OsFBX63, FBX63,OsFbox114, Os_F0103,  OsFBX64, FBX64,OsFbox115, Os_F0639,  OsFBX65, FBX65,OsFbox116, Os_F0291,  OsFBX66, FBX66,OsFbox120, Os_F0441,  OsFBX70, FBX70,OsFbox121, Os_F0352,OsFbox122, Os_F0288,  OsFBX72, FBX72,OsFbox123, Os_F0289,  OsFBX73, FBX73,OsFbox124, Os_F0262,  OsFBX74, FBX74,OsFbox128, Os_F0506,  OsFBL10, FBL10,OsFbox085, OsFbox85, Os_F0602,OsFbox127, Os_F0532,  OsFBX76, FBX76,OsFbox131, Os_F0292,  OsFBX77, FBX77,OsFbox135, Os_F0341,  OsFBX81, FBX81,OsFbox137, Os_F0544,  OsFBX82, FBX82,OsFbox136, Os_F0187,OsFbox134, Os_F0443,  OsFBX80, FBX80,OsFbox133, Os_F0449,  OsFBX79, FBX79,OsFbox132, Os_F0228,  OsFBX78, FBX78,OsFbox138, Os_F0340,  OsFBX83, FBX83,OsFbox140, Os_F0065,OsFbox142, Os_F0023,  OsFBX87, FBX87,OsFbox100,  OsFBX55, FBX55,OsFbox129, Os_F0178,  OsFBK11, FBK11,OsFbox067, OsFbox67, Os_F0477,  OsFBX38, FBX38,OsFbox143, Os_F0129,  OsFBX88, FBX88,OsFbox152, Os_F0251,  OsFBX95, FBX95,OsFbox154, Os_F0130,  OsFBDUF15, FBDUF15,OsFbox158, Os_F0008,  OsFBX98, FBX98,OsFbox159, Os_F0006,  OsFBX99, FBX99,OsFbox160, Os_F0017,OsFbox153,  OsFBX469, FBX469,OsFbox144, Os_F0237,  OsFBX89, FBX89,OsFbox145, Os_F0026,  OsFBX90, FBX90,OsFbox146, Os_F0179,  OsFBX91, FBX91,OsFbox147, Os_F0266,  OsFBX92, FBX92,OsFbox148, Os_F0426,  OsFBX93, FBX93,OsFbox150, Os_F0123,  OsFBX94, FBX94,OsFbox151, Os_F0222,  OsFBK13, FBK13,OsFbox155, Os_F0503,  OsFBX96, FBX96,OsFbox234, Os_F0170,  OsFBL20, FBL20,OsFbox157, Os_F0188,  OsFBX97, FBX97,OsFbox161, Os_F0076,  OsFBX101, FBX101,OsFbox126, Os_F0788,  OsFBX486, FBX486,OsFbox162, Os_F0012,OsFbox163, Os_F0009,  OsFBX103, FBX103,OsFbox089, OsFbox89, Os_F0377,  OsFBX50, FBX50,OsFbox118, Os_F0460,  OsFBX68, FBX68,  OsFBX69, FBX69,OsFbox119, Os_F0693,OsFbox125, Os_F0403,  OsFBX75, FBX75,OsFbox557, Fbox557, Os_F0256,  OsFBX389, FBX389,OsFbox164, Os_F0040,  OsFBX104, FBX104,OsFbox167, Os_F0244,OsFbox168, Os_F0132,  OsFBO16, FBO16,OsFbox169, Os_F0378,  OsFBDUF16, FBDUF16,OsFbox170, Os_F0296,  OsFBDUF17, FBDUF17,OsFbox171, Os_F0153,  OsFBX108, FBX108,OsFbox172, Os_F0303,  OsFBX109, FBX109,OsFbox173, Os_F0094,  OsFBX110, FBX110,OsFbox174, Os_F0714,  OsFBX111, FBX111,OsTIR1, OsFbox248, Fbox248, Os_F071, AFB,  OsFBL21, FBL21,OsFbox609, Os_F0370, OsFKF1,  OsFBO10, FBO10,OsFbox117, Os_F0679,  OsFBX67, FBX67,apo1(t), apo1, SCM2, SCM2/APO1, OsFbox321, Os_F0393, Pbl6/APO1, Pbl6, OsPbl6,  OsFBX202, FBX202,OsFbox175, Os_F0633,  OsFBX112, FBX112,OsFbox177, Os_F0120,  OsFBDUF19, FBDUF19,OsFbox179, Os_F0161,  OsFBX114, FBX114,OsFbox180, Os_F0342,OsFbox181, Os_F0655,  OsFBX117, FBX117,OsFbox184, Os_F0197,  OsFBX120, FBX120,OsFbox185, Os_F0197,  OsFBX121, FBX121,OsFbox186, Os_F0322,OsFbox187, Os_F0245,  OsFBX123, FBX123,OsFbox188, Os_F0182,  OsFBX124, FBX124,OsFbox190, Os_F0204,  OsFBD9, FBD9,OsFbox192, Os_F0688,  OsFBX126, FBX126,OsFbox193, Os_F0515,OsFbox237, Os_F0241,  OsFBX153, FBX153,OsFbox194, Os_F0635,  OsFBX470, FBX470,OsFbox196, Os_F0324,  OsFBL13, FBL13,OsFbox195, Os_F0144,  OsFBL12, FBL12,OsFbox197, Os_F0620,  OsFBX127, FBX127,OsFbox198, Os_F0644,  OsFBDUF20, FBDUF20,OsFbox199, Os_F0630,  OsFBX128, FBX128,OsFbox200, Os_F0645,  OsFBDUF21, FBDUF21,OsFbox201, Os_F0552,  OsFBX129, FBX129,OsFbox202, Os_F0749,OsFbox203, Os_F0600,  OsFBK14, FBK14,OsFbox204, Os_F0139,  OsFBX130, FBX130,OsFbox205, Os_F0044,  OsFBX131, FBX131,OsFbox207, Os_F0611,  OsFBLD2, FBLD2,OsFbox208, Os_F0775,  OsFBX132, FBX132,OsFbox211, Os_F0331,  OsFBX135, FBX135,OsFbox212, Os_F0238,  OsFBL17, FBL17,OsFbox213, Os_F0422,  OsFBX136, FBX136,OsFbox214, Os_F0430,  OsFBX137, FBX137,OsFbox215, Os_F0110,  OsFBX138, FBX138,OsFbox216, Os_F0328,  OsFBX139, FBX139,OsFbox218, Os_F0597,  OsFBDUF22, FBDUF22,OsFbox219, Os_F0485,  OsFBX141, FBX141,OsFbox220, Os_F0518,  OsFBX142, FBX142,OsFbox221, Os_F0036,  OsFBX143, FBX143,OsFbox224, Os_F0093,OsFbox225, Os_F0540,  OsFBX146, FBX146,OsFbox226, Os_F0022,  OsFBX147, FBX147,OsFbox227, Os_F0286,  OsFBL19, FBL19,OsFbox228, Os_F0553,  OsFBX148, FBX148,OsFbox229, Os_F0493,  OsFBX149, FBX149,OsFbox231, Os_F0565,  OsFBX151, FBX151,OsFbox235, Os_F0248,  OsFBX152, FBX152,OsFbox236, Os_F0264,  OsFBX493, FBX493,OsFbox238, Os_F0385,  OsFBX154, FBX154,OsFbox239, Os_F0304,  OsFBX472, FBX472,OsFbox242, Os_F0706,  OsFBX156, FBX156,OsFbox243, Os_F0545,  OsFBX473, FBX473,OsFbox241, Os_F0593,  OsFBX155, FBX155,OsFbox244, Os_F0497,  OsFBDUF23, FBDUF23,OsFbox245, Os_F0037,  OsFBX157, FBX157,OsFbox246, Os_F0004,  OsFBX158, FBX158,OsFbox247, Os_F0660,  OsFBX159, FBX159,OsFbox249, Os_F0030,  OsFBX160, FBX160,OsFbox250, Os_F0011,  OsFBX161, FBX161,OsFbox251, Os_F0085,  OsFBX162, FBX162,OsFbox252, Os_F0066,  OsFBX163, FBX163,OsFbox253, Os_F0052,  OsFBX164, FBX164,OsFbox254, Os_F0290,  OsFBDUF24, FBDUF24,OsFbox255, Os_F0067,  OsFBX165, FBX165,OsFbox256, Os_F0111,OsFbox257, Os_F0400,  OsFBX167, FBX167,OsFbox258, Os_F0658,  OsFBL22, FBL22,OsFbox261, Os_F0604,  OsFBL24, FBL24,OsFbox262, Os_F0703,OsFbox263, Os_F0721,OsFbox264, Os_F0554,OsFbox265, Os_F0584,  OsFBX168, FBX168,OsFbox266, Os_F0434,  OsFBX169, FBX169,OsFbox268, Os_F0080,  OsFBX170, FBX170,OsFbox269, Os_F0444,  OsFBL25, FBL25,OsFbox270, Os_F0454,  OsFBX171, FBX171,OsFbox271, Os_F0666,OsFbox272, Os_F0626,OsFbox273, Os_F0573,OsFbox274, Os_F0450,  OsFBX172, FBX172,OsFbox275, Os_F0483,  OsFBX173, FBX173,OsFbox276, Os_F0412,  OsFBX174, FBX174,OsFbox183, Fbox183, Os_F0203, F-box119,  OsFBX119, FBX119,OsFbox156, Os_F0603,  OsFBL62, FBL62,OsFbox176, Os_F0077,  OsFBDUF18, FBDUF18,OsFbox222, Os_F0047,  OsFBX144, FBX144,OsFbox223, Os_F0055,  OsFBX145, FBX145,OsFbox230, Os_F0308,  OsFBX150, FBX150,OsFbox277, Os_F0150,  OsFBX175, FBX175,OsFbox279, Os_F0100,  OsFBX176, FBX176,OsFbox280, Os_F0260,  OsFBX177, FBX177,OsFbox281, Os_F0379,  OsFBX475, FBX475,OsFbox283, Os_F0368,  OsFBL26, FBL26,OsFbox284, Os_F0301,  OsFBX179, FBX179,OsFbox285, Os_F0166,  OsFBX180, FBX180,OsFbox286, Os_F0619,  OsFBX181, FBX181,OsFbox287, Os_F0750,  OsFBX182, FBX182,OsFbox288, Os_F0622,  OsFBX183, FBX183,OsFbox289, Os_F0510,  OsFBO18, FBO18,OsFbox191, Os_F0109,  OsFBD10, FBD10,OsFbox290, Os_F0343,  OsFBX184, FBX184,OsFbox292, Os_F0618,  OsFBDUF30, FBDUF30,OsFbox293, Os_F0585,  OsFBX186, FBX186,OsFbox294, Os_F0333,OsFbox295, Os_F0299,  OsFBDUF32, FBDUF32,OsFbox296, Os_F0612,OsFbox297, Os_F0442,  OsFBX187, FBX187,OsFbox298, Os_F0486,  OsFBL28, FBL28,OsFbox299, Os_F0015,  OsFBX188, FBX188,OsFbox300, Os_F0003,OsFbox301, Os_F0013,  OsFBX190, FBX190,OsFbox303, Os_F0405,OsFbox305, Os_F0041,  OsFBX193, FBX193,OsFbox306, Os_F0305,  OsFBX194, FBX194,OsFbox307, Os_F0034,  OsFBX195, FBX195,OsFbox308, Os_F0081,  OsFBX196, FBX196,OsFbox309, Os_F0312,  OsFBD11, FBD11,OsFbox310, Os_F0057,  OsFBD12, FBD12,OsFbox311, Os_F0115,  OsFBX197, FBX197,OsFbox313, Os_F0104,  OsFBX198, FBX198,OsFbox354, Os_F0275,  OsFBX226, FBX226,OsFbox312, Os_F0546,  OsFBX476, FBX476,OsFbox315, Os_F0369,OsFbox317, Os_F0038,OsFbox318, Os_F0416,  OsFBX201, FBX201,OsFbox319, Os_F0429,  OsFBK17, FBK17,OsFbox320, Os_F0613,  OsFBDUF34, FBDUF34,OsFbox282, Os_F0643,  OsFBX178, FBX178,OsFbox322, Os_F0520,  OsFBX203, FBX203,OsFbox323, Os_F0105,  OsFBX204, FBX204,OsFbox324, Os_F0220,  OsFBX205, FBX205,OsFbox326, Os_F0327,  OsFBDUF35, FBDUF35,OsFbox327, Os_F0126,  OsFBX206, FBX206,OsFbox328, Os_F0254,  OsFBX207, FBX207,OsFbox329, Os_F0529,  OsFBX208, FBX208,OsFbox330, Os_F0521,  OsFBD13, FBD13,OsFbox331, Os_F0273,  OsFBL32, FBL32,OsFbox332, Os_F0267,  OsFBX209, FBX209,OsFbox333, Os_F0159,  OsFBL33, FBL33,OsFbox334, Os_F0361,OsFbox335, Os_F0487,  OsFBX211, FBX211,OsFbox336, Os_F0293,  OsFBX212, FBX212,OsFbox337, Os_F0302,  OsFBX213, FBX213,OsFbox338, Os_F0537,  OsFBX214, FBX214,OsFbox339, Os_F0636,  OsFBX215, FBX215,OsFbox340, Os_F0124,  OsFBK18, FBK18,OsFbox343, Os_F0141,  OsFBX216, FBX216,OsFbox342, Os_F0418,  OsFBL35, FBL35,OsFbox344, Os_F0183,  OsFBLD3, FBLD3,OsFbox345, Os_F0495,  OsFBX217, FBX217,OsFbox346, Os_F0078,OsFbox347, Os_F0072,  OsFBX220, FBX220,OsFbox348, Os_F0035,  OsFBX221, FBX221,OsFbox350, Os_F0212,  OsFBX222, FBX222,OsFbox351, Os_F0298,  OsFBX223, FBX223,OsFbox352, Os_F0525,  OsFBX224, FBX224,OsFbox353, Os_F0501,  OsFBX225, FBX225,OsFbox355, Os_F0349,  OsFBX227, FBX227,OsFbox356, Os_F0118,  OsFBX229, FBX229,OsFbox357, Os_F0033,  OsFBX230, FBX230,OsFbox359, Os_F0431,  OsFBX231, FBX231,OsFbox360, Os_F0235,  OsFBX232, FBX232,OsFbox358, Os_F0098,  OsFBLD4, FBLD4,OsFbox361, Os_F0171,  OsFBX233, FBX233,OsFbox362, Os_F0439,  OsFBL36, FBL36,OsFbox363, Os_F0353,  OsFBLD5, FBLD5,OsFbox364, Os_F0107,  OsFBLD6, FBLD6,OsFbox365, Os_F0205,  OsFBL37, FBL37,OsFbox366, Os_F0784,  OsFBLD7, FBLD7,OsFbox367, Os_F0432,  OsFBLD8, FBLD8,OsFbox368, Os_F0425,  OsFBDUF36, FBDUF36,OsFbox370, Os_F0625,  OsFBDUF37, FBDUF37,OsFbox371, Os_F0357,  OsFBX235, FBX235,OsFbox372, Os_F0371,OsFbox377, Os_F0465,OsFbox379, Os_F0261,  OsFBX242, FBX242,OsFbox373, Os_F0163,  OsFBL38, FBL38,OsFbox375, Os_F0062,  OsFBX237, FBX237,OsFbox376, Os_F0063,  OsFBX238, FBX238,OsFbox380, Os_F0423,  OsFBX243, FBX243,OsFbox384, Os_F0579,  OsFBX247, FBX247,OsFbox381, Os_F0656,OsFbox378, Os_F0217,  OsFBX241, FBX241,OsFbox383, Os_F0702,  OsFBX246, FBX246,OsFbox385, Os_F0148,  OsFBX248, FBX248,OsFbox386, Os_F0523,  OsFBX249, FBX249,OsFbox382, Os_F0731,  OsFBX245, FBX245,OsFbox388, Os_F0605,  OsFBX251, FBX251,OsFbox387, Os_F0534,  OsFBX250, FBX250,OsFbox341, Fbox341, Os_F0215,  OsFBL34, FBL34,OsFbox232, Os_F0576, Ctb1, OsCtb1,  OsFBK15, FBK15,OsFbox389, Os_F0673,  OsFBX252, FBX252,OsFbox390, Os_F0759,  OsFBX488, FBX488,OsFbox391, Os_F0082,  OsFBX253, FBX253,OsFbox392, Os_F0313,  OsFBL39, FBL39,OsFbox393, Os_F0462,  OsFBX254, FBX254,OsFbox395, Os_F0032,OsFbox397, Os_F0108,  OsFBX258, FBX258,OsFbox400, Os_F0541,  OsFBK19, FBK19,OsFbox408, Os_F0490,  OsFBX262, FBX262,OsFbox394, Os_F0722,  OsFBX255, FBX255,OsFbox349, Os_F0252, OsFBA2, FBA2,  OsFBA2, FBA2,OsFbox401, Os_F0042,  OsFBDUF39, FBDUF39,OsFbox403, Os_F0338,  OsFBX260, FBX260,OsFbox302, Os_F0143,  OsFBL29, FBL29,  OsFBX191, FBX191,OsFbox374, Os_F0598,OsFbox405, Os_F0623,  OsFBDUF41, FBDUF41,OsFbox406, Os_F0075,  OsFBL40, FBL40,OsFbox407, Os_F0406,  OsFBX261, FBX261,OsFbox409, Os_F0265,  OsFBX263, FBX263,OsFbox410, Os_F0192,  OsFBX264, FBX264,OsFbox411, Os_F0280,  OsFBX265, FBX265,OsFbox413, Os_F0321,  OsFBL41, FBL41,OsFbox404, Os_F0566,  OsFBDUF40, FBDUF40,OsFbox415, Os_F0498,OsFbox416, Os_F0464,  OsFBL42, FBL42,OsFbox417, Os_F0682,  OsFBL43, FBL43,OsFbox414, Os_F0654,  OsFBX267, FBX267,OsFbox418, Os_F0453,  OsFBX269, FBX269,OsFbox420, Os_F0206,  OsFBX271, FBX271,OsFbox421, Os_F0249,  OsFBX272, FBX272,OsFbox423, Os_F0386,  OsFBX274, FBX274,OsFbox425, Os_F0168,  OsFBX275, FBX275,OsFbox426, Os_F0184,  OsFBX276, FBX276,OsFbox427, Os_F0221,  OsFBX277, FBX277,OsFbox428, Os_F0440,  OsFBX278, FBX278,OsFbox429, Os_F0367,OsFbox430, Os_F0456,  OsFBX280, FBX280,OsFbox424, Os_F0348,  OsFBL44, FBL44,OsFbox432, Os_F0694,  OsFBL45, FBL45,OsFbox433, Os_F0239,  OsFBX282, FBX282,OsFbox435, Os_F0317,  OsFBO20, FBO20,OsFbox431, Os_F0614,  OsFBX281, FBX281,OsFbox437, Os_F0277,  OsFBL46, FBL46,OsFbox436, Os_F0146,OsFbox438, Os_F0427,  OsFBL47, FBL47,OsFbox439, Os_F0320,OsFbox422, Os_F0246,  OsFBX273, FBX273,OsFbox440, Os_F0542,  OsFBDUF44, FBDUF44,OsFbox444, Os_F0648,  OsFBX291, FBX291,OsFbox445, Os_F0550,  OsFBX479, FBX479,OsFbox441, Os_F0010,  OsFBX288, FBX288,OsFbox447, Os_F0225,  OsFBX293, FBX293,OsFbox446, Os_F0095,  OsFBX292, FBX292,OsFbox448, Os_F0428,  OsFBDUF46, FBDUF46,OsFbox449, Os_F0345,  OsFBL48, FBL48,OsFbox450, Os_F0185,  OsFBX294, FBX294,OsFbox452, Os_F0193,  OsFBL50, FBL50,OsFbox451, Os_F0189,  OsFBL49, FBL49,OsFbox453, Os_F0339,  OsFBD14, FBD14,OsFbox454, Os_F0207,  OsFBL51, FBL51,OsFbox455, Os_F0173,  OsFBX295, FBX295,OsFbox457, Os_F0575,  OsFBX297, FBX297,OsFbox458, Os_F0530,  OsFBX298, FBX298,OsFbox461, Os_F0025,  OsFBX301, FBX301,OsFbox053, OsFbox53, Os_F0309, OsLC4,  OsFBX32, FBX32,OsFbox462, Os_F0019,  OsFBX302, FBX302,OsFbox463, Os_F0230,  OsFBX303, FBX303,OsFbox464, Os_F0048,  OsFBX304, FBX304,OsFbox465, Os_F0016,OsFbox466, Os_F0587,  OsFBX306, FBX306,OsFbox460, Os_F0200,  OsFBX300, FBX300,OsFbox468, Os_F0398,  OsFBX308, FBX308,OsFbox469, Os_F0272,  OsFBX309, FBX309,OsFbox470, Os_F0504,  OsFBX311, FBX311,OsFbox467, Os_F0397,  OsFBX307, FBX307,OsFbox471, Os_F0538,  OsFBX312, FBX312,OsFbox473, Os_F0455,  OsFBX314, FBX314,OsFbox474, Os_F0632,  OsFBX315, FBX315,OsFbox475, Os_F0634,  OsFBX316, FBX316,OsFbox459, Os_F0074,  OsFBX299, FBX299,OsFbox479, Os_F0399,  OsFBX320, FBX320,OsFbox478, Os_F0354,  OsFBX319, FBX319,OsFbox476, Os_F0457,  OsFBX317, FBX317,OsFbox482, Os_F0167,  OsFBX323, FBX323,OsFbox477, Os_F0147,  OsFBX318, FBX318,OsFbox480, Os_F0388,OsFbox483, Os_F0233,  OsFBX324, FBX324,OsFbox484, Os_F0373,  OsFBX325, FBX325,OsFbox491, Os_F0580,  OsFBX330, FBX330,OsFbox485, Os_F0149,  OsFBX326, FBX326,OsFbox486, Os_F0355,  OsFBX328, FBX328,OsFbox487, Os_F0548,  OsFBLD9, FBLD9,OsFbox494, Os_F0637,  OsFBX333, FBX333,OsFbox495, Os_F0522,  OsFBX334, FBX334,OsFbox488, Os_F0562,  OsFBX329, FBX329,OsFbox489, Os_F0053,  OsFBA3, FBA3,OsFbox492, Os_F0175,  OsFBX331, FBX331,OsFbox493, Os_F0049,  OsFBX332, FBX332,OsFbox496, Os_F0287,OsFbox497, Os_F0433,  OsFBX336, FBX336,OsFbox498, Os_F0145,  OsFBX337, FBX337,OsFbox499, Os_F0020,  OsFBX338, FBX338,OsFbox500, Os_F0186,  OsFBX339, FBX339,OsFbox412, Fbox412, Os_F0356,  OsFBX266, FBX266,OsFbox472, Fbox472, Os_F0599, OsFBX313, FBX313,  OsFBX313, FBX313,OsFbox399, Os_F0281,  OsFBX259, FBX259,OsFbox501, Os_F0050,  OsFBX340, FBX340,OsFbox503, Os_F0101,  OsFBK20, FBK20,OsFbox504, Os_F0474,  OsFBX341, FBX341,OsFbox505, Os_F0638,  OsFBX342, FBX342,OsFbox507, Os_F0071,  OsFBX343, FBX343,OsFbox508, Os_F0127,  OsFBX344, FBX344,OsFbox510, Os_F0210,  OsFBX346, FBX346,OsFbox511, Os_F0112,  OsFBX347, FBX347,OsFbox512, Os_F0102,  OsFBX348, FBX348,OsFbox513, Os_F0131,  OsFBX349, FBX349,OsFbox514, Os_F0140,  OsFBX350, FBX350,OsFbox515, Os_F0086,  OsFBX351, FBX351,OsFbox396, Os_F0578, OsMsr9, Msr9,  OsFBX257, FBX257,OsFbox517, Os_F0054,  OsFBX353, FBX353,OsFbox520, Os_F0588,  OsFBX356, FBX356,OsFbox521, Os_F0526,  OsFBX357, FBX357,OsFbox522, Os_F0408,  OsFBX358, FBX358,OsFbox518, Os_F0218,  OsFBX354, FBX354,OsFbox523, Os_F0629,  OsFBX359, FBX359,OsFbox524, Os_F0561,  OsFBX360, FBX360,OsFbox525, Os_F0176,  OsFBX361, FBX361,OsFbox526, Os_F0056,  OsFBX362, FBX362,OsFbox531, Os_F0024,  OsFBX367, FBX367,OsFbox532, Os_F0058,  OsFBX368, FBX368,OsFbox533, Os_F0350,  OsFBX369, FBX369,OsFbox535, Os_F0208,  OsFBX371, FBX371,OsFbox536, Os_F0201,  OsFBX372, FBX372,OsFbox538, Os_F0470,OsFbox539, Os_F0316,  OsFBX375, FBX375,OsFbox540, Os_F0468,  OsFBX376, FBX376,OsFbox534, Os_F0527,  OsFBX370, FBX370,OsFbox537, Os_F0165,  OsFBX373, FBX373,OsFbox541, Os_F0409,  OsFBX377, FBX377,OsFbox543, Os_F0162,  OsFBX379, FBX379,OsFbox544, Os_F0652,  OsFBX380, FBX380,OsFbox545, Os_F0535,  OsFBX381, FBX381,OsFbox528, Os_F0224,  OsFBO5, FBO5,OsFbox547, Os_F0119,  OsFBK21, FBK21,OsFbox548, Os_F0160,  OsFBX383, FBX383,OsFbox549, Os_F0255,  OsFBK22, FBK22,OsFbox550, Os_F0263,  OsFBX384, FBX384,OsFbox551, Os_F0073,  OsFBX385, FBX385,OsFbox554, Os_F0677,  OsFBX386, FBX386,OsFbox555, Os_F0152,  OsFBX387, FBX387,OsFbox527, Os_F0059,  OsFBX363, FBX363,OsFbox558, Os_F0376,  OsFBX390, FBX390,OsFbox559, Os_F0572,  OsFBDUF49, FBDUF49,OsFbox560, Os_F0582,  OsFBX391, FBX391,OsFbox546, Os_F0513,  OsFBX382, FBX382,OsFbox564, Os_F0113,  OsFBX394, FBX394,OsFbox556, Os_F0154,  OsFBX388, FBX388,OsFbox561, Os_F0014,  OsFBX392, FBX392,OsFbox562, Os_F0002,OsFbox563, Os_F0773,  OsFBL66, FBL66,OsFbox566, Os_F0279,  OsFBK24, FBK24,OsFbox567, Os_F0713,  OsFBX490, FBX490,OsFbox568, Os_F0335,  OsFBX396, FBX396,OsFbox570, Os_F0219,  OsFBX397, FBX397,OsFbox572, Os_F0135,  OsFBX398, FBX398,OsFbox577, Os_F0135,OsFbox578, Os_F0136,  OsFBL53, FBL53,OsFbox565, Os_F0027,  OsFBX395, FBX395,OsFbox579, Os_F0334,OsFbox580, Os_F0096,  OsFBX405, FBX405,OsFbox582, Os_F0511,  OsFBX407, FBX407,OsFbox583, Os_F0363,  OsFBX408, FBX408,OsFbox584, Os_F0231,  OsFBX409, FBX409,OsFbox585, Os_F0294,  OsFBX410, FBX410,OsFbox587, Os_F0097,  OsFBX412, FBX412,OsFbox597, Os_F0447,  OsFBX420, FBX420,OsFbox519,  OsFBX355, FBX355,OsFbox598, Os_F0672,  OsFBX480, FBX480,OsFbox600, Os_F0472,  OsFBO4, FBO4,OsFbox595, Os_F0194,  OsFBL54, FBL54,OsFbox604, Os_F0232,  OsFBX422, FBX422,OsFbox602, Os_F0512,  OsFBX421, FBX421,OsFbox593, Os_F0278, Fbox-3,  OsFBX418, FBX418,OsFbox590, Os_F0068, Fbox-6,OsFbox589, Os_F0137, Fbox-8,  OsFBX414, FBX414,OsFbox588, Os_F0365, Fbox-10,  OsFBX413, FBX413,OsFbox586, Os_F0088, Fbox-13,  OsFBX411, FBX411,OsFbox599,  OsFBX492, FBX492,OsFbox605, Os_F0437,  OsFBL57, FBL57,OsFbox606, Os_F0155,  OsFBX423, FBX423,OsFbox607, Os_F0045,  OsFBX424, FBX424,OsFbox608, Os_F0043,  OsFBX425, FBX425,OsFbox616, Os_F0314,  OsFBDUF54, FBDUF54,OsFbox617, Os_F0505,  OsFBDUF55, FBDUF55,OsFbox621, Os_F0621,  OsFBDUF59, FBDUF59,OsFbox622, Os_F0499,  OsFBDUF60, FBDUF60,OsFbox630, Os_F0318,  OsFBX430, FBX430,OsFbox623, Os_F0502,  OsFBDUF61, FBDUF61,OsFbox637, Os_F0061,  OsFBX435, FBX435,OsFbox641, Os_F0319,  OsFBO23, FBO23,OsFbox626,  OsFBDUF64, FBDUF64,OsFbox530, Fbox530, Os_F0198, OsFBX365, FBX365, PEG2,  OsFBX365, FBX365,OsFbox573,OsFbox574,OsFbox575,OsFbox576,OsFbox581, Os_F0649,OsFbox481, Os_F0362, FBX322, OsFBX322,  OsFBX322, FBX322,OsFbox552, Os_F0216,  OsFBL52, FBL52,OsFbox636, Fbox636, Os_F0774,  OsFBL63, FBL63,OsFbox603, Os_F0489,  OsFBL56, FBL56,OsFbox610, Os_F0557,  OsFBDUF50, FBDUF50,OsFbox612, Os_F0268,  OsFBDUF51, FBDUF51,OsFbox613, Os_F0243,  OsFBDUF52, FBDUF52,OsFbox614, Os_F0381,  OsFBDUF53, FBDUF53,OsFbox618, Os_F0583,  OsFBDUF56, FBDUF56,OsFbox615, Os_F0099,  OsFBX426, FBX426,OsFbox620, Os_F0358,  OsFBDUF58, FBDUF58,OsFbox624, Os_F0226,  OsFBDUF62, FBDUF62,OsFbox627, Os_F0089,  OsFBX427, FBX427,OsFbox628, Os_F0028,OsFbox629, Os_F0564,  OsFBX429, FBX429,OsFbox631, Os_F0064,  OsFBX431, FBX431,OsFbox632, Os_F0391,  OsFBX432, FBX432,OsFbox625, Os_F0458,OsFbox633, Os_F0413,  OsFBX433, FBX433,OsFbox634, Os_F0372,  OsFBX434, FBX434,OsFbox635, Os_F0310,  OsFBL58, FBL58,OsFbox648, Os_F0414,OsFbox638, Os_F0021,  OsFBX436, FBX436,OsFbox639, Os_F0382,  OsFBX437, FBX437,OsFbox643,  OsFBX481, FBX481,OsFbox642, Os_F0213,  OsFBO24, FBO24,OsFbox644, Os_F0725,  OsFBX439, FBX439,OsFbox646, Os_F0134,  OsFBX440, FBX440,OsFbox647, Os_F0466,  OsFBX441, FBX441,OsFbox649, Os_F0410,  OsFBX443, FBX443,OsFbox650, Os_F0568,  OsFBX444, FBX444,OsFbox651, Os_F0018,  OsFBA4, FBA4,OsFbox652, Os_F0284,  OsFBX445, FBX445,OsFbox553, Os_F0250,  OsFBK23, FBK23,OsFbox655, Os_F0116,  OsFBD15, FBD15,OsFbox657, Os_F0500,  OsFBL59, FBL59,OsFbox658, Os_F0589,  OsFBL60, FBL60,OsFbox659, Os_F0424,  OsFBX449, FBX449,OsFbox661, Os_F0665,  OsFBL61, FBL61,OsFbox660, Os_F0569,  OsFBX450, FBX450,OsFbox662, Os_F0567,  OsFBX451, FBX451,OsFbox663, Os_F0276,  OsFBX452, FBX452,OsFbox664, Os_F0592,  OsFBX453, FBX453,OsFbox665, Os_F0555,  OsFBX454, FBX454,OsFbox666, Os_F0411,  OsFBX455, FBX455,OsFbox667, Os_F0594,  OsFBD16, FBD16,OsFbox668, Os_F0389,OsFbox669, Os_F0383,  OsFBX456, FBX456,OsFbox670, Os_F0419,  OsFBDUF66, FBDUF66,OsFbox671, Os_F0524,  OsFBX457, FBX457,OsFbox673, Os_F0735,  OsFBX460, FBX460,OsFbox674, Os_F0164,  OsFBX462, FBX462,OsFbox676, Os_F0269,  OsFBX463, FBX463,OsFbox677, Os_F0195,  OsFBX464, FBX464,OsFbox678, Os_F0417,OsFbox675, Os_F0744,OsFbox653, Os_F0172,OsFbox005, OsFbox5, Os_F0747, OsFBX4,  OsFBX4, FBX4,OsFbox506, Os_F0596,  OsFBO22, FBO22,OsFbox640, Fbox640, Os_F0395, OsFBX438, FBX438,  OsFBX438, FBX438,OsFbox210,  OsFBX134, FBX134,OsFbox182, Os_F0223, F-box118,  OsFBX118, FBX118,OsFbox542, Os_F0480, OsSTA237,  OsFBX378, FBX378,OsFbox011, OsFbox11, Os_F0196, OsFBX7, FBX7,  OsFBX7, FBX7,OsFbox656,  OsFBX448, FBX448,OsFbox654, Os_F0092,  OsFBX447, FBX447,OsFbox619, Os_F0190, OsSTA265,  OsFBDUF57, FBDUF57,OsFbox007, OsFbox7, Os_F0351,OsFbox010, OsFbox10, Os_F0156, OsFBX6,  OsFBX6, FBX6,OsFbox178, Os_F0705,  OsFBX113, FBX113,OsFbox025, OsFbox25, Os_F0325,  OsFBD5, FBD5,OsFbox291, Os_F0516,  OsFBX185, FBX185,OsFbox529, Os_F0667, OsEnS-132,  OsFBX364, FBX364,OsFbox601, Os_F0719,  OsFBL68, FBL68,OsFbox001, OsFbox1, Os_F0615, OsFBX1,  OsFBX1, FBX1,OsFbox072, OsFbox72, Fbox72, Os_F0508, OsEBF2, EBF2,  OsFBL7, FBL7,OsFbox006, OsFbox6, Os_F0083, OsFBX5, OsSTA12,  OsFBX5, FBX5,OsFbox456, Fbox456, Os_F0543,  OsFBX296, FBX296,OsFbox443, Os_F0084, OsSTA212,  OsFBX290, FBX290,OsFbox217, Os_F0121, MOF, OsMOF,  OsFBX140, FBX140
38654	21297981	Hua Z., Zou C., Shin-Han Shiu, Richard D Vierstra	Phylogenetic comparison of F-Box (FBX) gene superfamily within the plant kingdom reveals divergent evolutionary histories indicative of genomic drift.	PLoS ONE	6(1)	e16219	2011	_,_,FBOX72,_,_,_,D3,_,FBOX316,FBOX206,COI1,_,_,FBOX291,EP3,_,COI1B,_,TLP8,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,LC4,_,_,_,_,_,_,_,FBOX58,FBOX6,WCR1,ZTL1,_,TLP1,TLP2,TLP3,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,SAF,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,FBOX130,TLP6,_,TLP5,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,FBOX33,TLP7,TLP9,BRT1,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,FBOX11,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,FKF1,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,FBOX394,FBOX349,TLP10,TLP11,TLP12,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,FBOX516,FBOX396,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,TLP13,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,SHPR,TLP14,_,_,_,_,_,APO1,_,_,_,_,_,_,_,_,TIR1,_,_,_,ZTL2,_,ZYGO1,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_	OsFbox141, Os_F0122, OsFBX86, FBX86,Os_F0698,  OsFBX461, FBX461,OsFbox072, OsFbox72, Fbox72, Os_F0508, OsEBF2, EBF2,  OsFBL7, FBL7,Os_F0559,OsFbox490, Os_F0091,OsFBX289, OsKIX_7, OsFbox442, Os_F0407, OsEnS-121,  OsFBX289, FBX289,d3, dwf3, D3/OsMAX2, Os_F0760, SOL1, OsORE9, ORE9, MAX2, OsRFPH2-10, RFPH2-10, OsD3,  OsFBL27, FBL27,OsFBX270, OsKIX_5, OsFbox419, Os_F0547, OsEnS-118,  OsFBX270, FBX270,OsFbox316, Fbox316, Os_F0624, OsEBF1, EBF1,  OsFBL30, FBL30,OsAFB2, ABF2, OsAFB2-1, OsAFB2-2, OsFbox206, Os_F0492, OsTIR1, TIR1,  OsFBL16, FBL16,OsCOI1a, OsCOI1, Os_F0728, COI1a, F0728,  OsFBL4, FBL4,OsFbox389, Os_F0673,  OsFBX252, FBX252,OsFbox509, Os_F0258, OsADF, ADF,  OsFBX345, FBX345,OsFbox291, Os_F0516,  OsFBX185, FBX185,EP3/LP, LP, OsLP, OsFbox076, OsFbox76, Os_F0106, OsEP3,  OsFBK5, FBK5,OsFbox565, Os_F0027,  OsFBX395, FBX395,OsCOI1b, COI1b, OsCOI1H, COI1H, OsFbox260, Fbox260, Os_F0646,  OsFBL23, FBL23, OsCOl-1, COl-1,OsFbox001, OsFbox1, Os_F0615, OsFBX1,  OsFBX1, FBX1,OsTLP1, OsTLP1a, OsTLP1b, OsTLP1c, OsTLP8, OsFbox259, Os_F0415,  OsFBT7, FBT7,OsFbox020, OsFbox20, Os_F0674,  OsFBX16, FBX16,OsFbox003, OsFbox3, Os_F0209, OsFBX3,  OsFBX3, FBX3,OsFbox004, OsFbox4, Os_F0387,  OsFBDUF1, FBDUF1,OsFbox012, OsFbox12, Os_F0539, OsFBX8,OsFbox008, OsFbox8, Os_F0329,  OsFBDUF3, FBDUF3,OsFbox007, OsFbox7, Os_F0351,OsFbox005, OsFbox5, Os_F0747, OsFBX4,  OsFBX4, FBX4,OsFbox009, OsFbox9, Os_F0616,  OsFBDUF4, FBDUF4,OsFbox017, OsFbox17, Os_F0392,  OsFBX14, FBX14,OsFbox593, Os_F0278, Fbox-3,  OsFBX418, FBX418,OsFbox018, OsFbox18, Os_F0259,  OsFBX15, FBX15,OsFbox021, OsFbox21, Os_F0117,OsFbox022, OsFbox22, Os_F0366,  OsFBD2, FBD2,OsFbox024, OsFbox24, Os_F0087,OsFbox027, OsFbox27, Os_F0595,  OsFBL1, FBL1,OsFbox013, OsFbox13, Os_F0590, OsFBX10,  OsFBX10, FBX10,OsFbox014, OsFbox14, Os_F0467, OsFBX11,  OsFBX11, FBX11,OsFbox015, OsFbox15, Os_F0481, OsFBX12,  OsFBX12, FBX12,OsFbox016, OsFbox16, Os_F0471, OsFBX13,  OsFBX13, FBX13,OsFbox026, OsFbox26, Os_F0242,  OsFBX18, FBX18,OsFbox028, OsFbox28, Os_F0158,  OsFBL2, FBL2,OsFbox032, OsFbox32, Os_F0271,  OsFBX21, FBX21,OsFbox040, OsFbox40, Os_F0476,  OsFBX26, FBX26,OsFbox029, OsFbox29, Os_F0384,  OsFBX482, FBX482,OsFbox031, OsFbox31, Os_F0326,  OsFBX20, FBX20,OsFbox030, OsFbox30, Os_F0577,  OsFBX19, FBX19,OsFbox035, OsFbox35, Os_F0556,  OsFBX22, FBX22,OsFbox036, OsFbox36, Os_F0051,  OsFBX23, FBX23,OsFbox037, OsFbox37, Os_F0332,  OsFBX24, FBX24,OsFbox038, OsFbox38, Os_F0519,OsFbox041, OsFbox41, Os_F0730,OsFbox042, OsFbox42, Os_F0608,OsFbox043, OsFbox43, Os_F0563,  OsFBDUF8, FBDUF8,OsFbox044, OsFbox44, Os_F0491,  OsFBL3, FBL3,OsFbox046, OsFbox46, Os_F0609,  OsFBX28, FBX28,OsFbox047, OsFbox47, Os_F0754,  OsFBX29, FBX29,OsFbox048, OsFbox48, Os_F0202,  OsFBX30, FBX30,OsFbox049, OsFbox49, Os_F0364,  OsFBL5, FBL5,OsFbox051, OsFbox51, Os_F0330,  OsFBX31, FBX31,OsFbox054, OsFbox54, Os_F0420,OsFbox055, OsFbox55, Os_F0463,  OsFBDUF10, FBDUF10,OsFbox056, OsFbox56, Os_F0469,  OsFBX33, FBX33,OsFbox057, OsFbox57, Os_F0570,  OsFBDUF11, FBDUF11,OsFbox059, OsFbox59, Os_F0692,  OsFBL6, FBL6,OsFbox060, OsFbox60, Os_F0125,  OsFBK2, FBK2,OsFbox061, OsFbox61, Os_F0473,  OsFBDUF12, FBDUF12,OsFbox062, OsFbox62, Os_F0282,  OsFBX34, FBX34,OsFbox063, OsFbox63, Os_F0090,  OsFBX35, FBX35,OsFbox064, OsFbox64, Os_F0285,  OsFBX36, FBX36,OsFbox065, OsFbox65, Os_F0311,  OsFBX37, FBX37,OsFbox068, OsFbox68, Os_F0346,  OsFBLD1, FBLD1,OsFbox069, OsFbox69, Os_F0227,  OsFBD6, FBD6,OsFbox070, OsFbox70, Os_F0151,  OsFBX39, FBX39,OsFbox071, OsFbox71, Os_F0306,  OsFBA1, FBA1,OsFbox053, OsFbox53, Os_F0309, OsLC4,  OsFBX32, FBX32,OsFbox045, OsFbox45, Os_F0307,  OsFBX27, FBX27,OsFbox073, OsFbox73, Os_F0359,  OsFBK3, FBK3,OsKMD1, OsFbox074, OsFbox74, Os_F0323,  OsFBK4, FBK4,OsFbox075, OsFbox75, Os_F0514,  OsFBX40, FBX40,OsFbox077, OsFbox77, Os_F0558,OsFbox078, OsFbox78, Os_F0445,OsFbox079, OsFbox79, Os_F0641,  OsFBX43, FBX43,OsFbox058, OsFbox58, Os_F0591, DLN37, OsDLN37, CHR707, OsCHR707,  OsFBO7, FBO7,OsFbox006, OsFbox6, Os_F0083, OsFBX5, OsSTA12,  OsFBX5, FBX5,OsFbox052, OsFbox52, Os_F0755, OsWCR1,  OsFBO2, FBO2,OsZTL1, OsFbox066, OsFbox66, Os_F0484, OsLKP2, LKP2,  OsFBO8, FBO8,OsFbox484, Os_F0373,  OsFBX325, FBX325,OsTLP9, TLP9, OsTLP9a, OsTLP9b, OsTLP9c, OsTLP1, OsFbox034, OsFbox34, Os_F0675,  OsFBT1, FBT1,OsTLP12, OsTLP2, OsFbox039, OsFbox39, Os_F0683,  OsFBT2, FBT2,OsTLP5, TLP5, OsTLP3, OsFbox050, OsFbox50, Os_F0396,  OsFBT3, FBT3,OsFbox080, OsFbox80, Os_F0533,  OsFBX44, FBX44,OsFbox081, OsFbox81, Os_F0375,  OsFBX45, FBX45,OsFbox082, OsFbox82, Os_F0509,  OsFBX46, FBX46,OsFbox083, OsFbox83, Os_F0360,  OsFBX47, FBX47,OsFbox084, OsFbox84, Os_F0452,  OsFBK6, FBK6,OsFbox086, OsFbox86, Os_F0482,  OsFBX48, FBX48,OsFbox087, OsFbox87, Os_F0536,  OsFBL8, FBL8,OsFbox088, OsFbox88, Os_F0475,  OsFBX49, FBX49,OsRALyase, OsFbox090, OsFbox90, Os_F0337,  OsFBO11, FBO11,OsFbox091, OsFbox91, Os_F0517,  OsFBK7, FBK7,OsFbox092, OsFbox92, Os_F0704,  OsFBX51, FBX51,OsFbox093, OsFbox93, Os_F0270,  OsFBD7, FBD7,OsFbox094, OsFbox94, Os_F0336,  OsFBL9, FBL9,OsKMD3, OsFbox096, OsFbox96, Os_F0169,  OsFBK8, FBK8,OsFbox097, OsFbox97, Os_F0402,  OsFBX53, FBX53,OsFbox023, OsFbox23, Os_F0211, OsSTA20,  OsFBD3, FBD3,OsFbox095, OsFbox95, Os_F0274, OsSTA64,  OsFBX52, FBX52,SaF, OsFbox019, OsFbox19, Os_F0070,  OsFBD1, FBD1,OsFbox098, OsFbox98, Os_F0174,  OsFBK9, FBK9,OsFbox099, OsFbox99, Os_F0180,  OsFBX466, FBX466,OsFbox101, Os_F0678,OsFbox102, Os_F0177,  OsFBO12, FBO12,OsFbox103, Os_F0039,  OsFBX57, FBX57,MAIF1, OsFbox104, Os_F0528,  OsFBDUF13, FBDUF13,OsFbox105, Os_F0549,  OsFBX58, FBX58,OsFbox106, Os_F0496,  OsFBD8, FBD8,OsFbox108, Os_F0236,  OsFBX60, FBX60,OsFbox110, Os_F0551,  OsFBX61, FBX61,OsFbox109, Os_F0628,  OsFBK10, FBK10,OsFbox111, Os_F0005,  OsFBX62, FBX62,OsFbox112, Os_F0657,OsFbox113, Os_F0234,  OsFBX63, FBX63,OsFbox114, Os_F0103,  OsFBX64, FBX64,OsFbox115, Os_F0639,  OsFBX65, FBX65,OsFbox116, Os_F0291,  OsFBX66, FBX66,OsFbox120, Os_F0441,  OsFBX70, FBX70,OsFbox121, Os_F0352,OsFbox122, Os_F0288,  OsFBX72, FBX72,OsFbox123, Os_F0289,  OsFBX73, FBX73,OsFbox124, Os_F0262,  OsFBX74, FBX74,OsFbox128, Os_F0506,  OsFBL10, FBL10,OsFbox085, OsFbox85, Os_F0602,OsFbox127, Os_F0532,  OsFBX76, FBX76,OsFbox067, OsFbox67, Os_F0477,  OsFBX38, FBX38,OsFbox131, Os_F0292,  OsFBX77, FBX77,OsFbox135, Os_F0341,  OsFBX81, FBX81,OsFbox137, Os_F0544,  OsFBX82, FBX82,OsFbox136, Os_F0187,OsFbox134, Os_F0443,  OsFBX80, FBX80,OsFbox133, Os_F0449,  OsFBX79, FBX79,OsFbox132, Os_F0228,  OsFBX78, FBX78,OsFbox138, Os_F0340,  OsFBX83, FBX83,OsFbox140, Os_F0065,OsFbox142, Os_F0023,  OsFBX87, FBX87,OsFbox143, Os_F0129,  OsFBX88, FBX88,OsFbox129, Os_F0178,  OsFBK11, FBK11,OsFbox152, Os_F0251,  OsFBX95, FBX95,OsFbox154, Os_F0130,  OsFBDUF15, FBDUF15,OsFbox158, Os_F0008,  OsFBX98, FBX98,OsFbox159, Os_F0006,  OsFBX99, FBX99,OsFbox160, Os_F0017,OsFbox144, Os_F0237,  OsFBX89, FBX89,OsFbox145, Os_F0026,  OsFBX90, FBX90,OsFbox146, Os_F0179,  OsFBX91, FBX91,OsFbox147, Os_F0266,  OsFBX92, FBX92,OsFbox148, Os_F0426,  OsFBX93, FBX93,OsFbox150, Os_F0123,  OsFBX94, FBX94,OsFbox151, Os_F0222,  OsFBK13, FBK13,OsFbox155, Os_F0503,  OsFBX96, FBX96,OsFbox234, Os_F0170,  OsFBL20, FBL20,OsFbox157, Os_F0188,  OsFBX97, FBX97,OsFbox161, Os_F0076,  OsFBX101, FBX101,OsFbox126, Os_F0788,  OsFBX486, FBX486,OsFbox162, Os_F0012,OsFbox163, Os_F0009,  OsFBX103, FBX103,OsFbox164, Os_F0040,  OsFBX104, FBX104,JMJ711, OsFbox149, Os_F0347, DLN88, OsDLN88,  OsFBO14, FBO14,OsFbox089, OsFbox89, Os_F0377,  OsFBX50, FBX50,OsFbox118, Os_F0460,  OsFBX68, FBX68,  OsFBX69, FBX69,OsFbox119, Os_F0693,OsFbox125, Os_F0403,  OsFBX75, FBX75,OsFbox167, Os_F0244,OsFbox168, Os_F0132,  OsFBO16, FBO16,OsFbox169, Os_F0378,  OsFBDUF16, FBDUF16,OsFbox170, Os_F0296,  OsFBDUF17, FBDUF17,OsFbox171, Os_F0153,  OsFBX108, FBX108,OsFbox172, Os_F0303,  OsFBX109, FBX109,OsFbox173, Os_F0094,  OsFBX110, FBX110,OsFbox174, Os_F0714,  OsFBX111, FBX111,OsFBK12, OsFbox130, Os_F0642,  OsFBK12, FBK12,OsTLP14, TLP14, OsTLP6, OsFbox139, Os_F0681,  OsFBT5, FBT5,OsFbox117, Os_F0679,  OsFBX67, FBX67,OsTLP8, LP8, OsTLP8a, OsTLP8b, OsTLP8c, OsTLP8d, OsTLP5, OsFbox107, Os_F0446,  OsFBT4, FBT4,OsFbox175, Os_F0633,  OsFBX112, FBX112,OsFbox177, Os_F0120,  OsFBDUF19, FBDUF19,OsFbox179, Os_F0161,  OsFBX114, FBX114,OsFbox180, Os_F0342,OsFbox181, Os_F0655,  OsFBX117, FBX117,OsFbox184, Os_F0197,  OsFBX120, FBX120,OsFbox185, Os_F0197,  OsFBX121, FBX121,OsFbox186, Os_F0322,OsFbox187, Os_F0245,  OsFBX123, FBX123,OsFbox188, Os_F0182,  OsFBX124, FBX124,OsFbox190, Os_F0204,  OsFBD9, FBD9,OsFbox192, Os_F0688,  OsFBX126, FBX126,OsFbox193, Os_F0515,OsFbox237, Os_F0241,  OsFBX153, FBX153,OsFbox194, Os_F0635,  OsFBX470, FBX470,OsFbox196, Os_F0324,  OsFBL13, FBL13,OsFbox195, Os_F0144,  OsFBL12, FBL12,OsFbox197, Os_F0620,  OsFBX127, FBX127,OsFbox198, Os_F0644,  OsFBDUF20, FBDUF20,OsFbox199, Os_F0630,  OsFBX128, FBX128,Os_F0767, OsTIR1, TIR1, OsAFB4, AFB4 ,  OsFBL71, FBL71,OsFbox200, Os_F0645,  OsFBDUF21, FBDUF21,OsFbox201, Os_F0552,  OsFBX129, FBX129,OsFbox202, Os_F0749,OsFbox203, Os_F0600,  OsFBK14, FBK14,OsFbox204, Os_F0139,  OsFBX130, FBX130,OsFbox205, Os_F0044,  OsFBX131, FBX131,OsDRF1, OsFbox209, Os_F0001,  OsFBX133, FBX133,OsFbox207, Os_F0611,  OsFBLD2, FBLD2,OsFbox208, Os_F0775,  OsFBX132, FBX132,OsFbox211, Os_F0331,  OsFBX135, FBX135,OsFbox212, Os_F0238,  OsFBL17, FBL17,OsFbox213, Os_F0422,  OsFBX136, FBX136,OsFbox214, Os_F0430,  OsFBX137, FBX137,OsFbox215, Os_F0110,  OsFBX138, FBX138,OsFbox216, Os_F0328,  OsFBX139, FBX139,OsFbox218, Os_F0597,  OsFBDUF22, FBDUF22,OsFbox219, Os_F0485,  OsFBX141, FBX141,OsFbox220, Os_F0518,  OsFBX142, FBX142,OsFbox221, Os_F0036,  OsFBX143, FBX143,OsFbox224, Os_F0093,OsFbox225, Os_F0540,  OsFBX146, FBX146,OsFbox226, Os_F0022,  OsFBX147, FBX147,OsFbox227, Os_F0286,  OsFBL19, FBL19,OsFbox228, Os_F0553,  OsFBX148, FBX148,OsFbox229, Os_F0493,  OsFBX149, FBX149,OsFbox231, Os_F0565,  OsFBX151, FBX151,OsWD40-110, OsFbox233, Os_F0069,  OsFBW1, FBW1,OsFbox235, Os_F0248,  OsFBX152, FBX152,OsFbox236, Os_F0264,  OsFBX493, FBX493,OsFbox238, Os_F0385,  OsFBX154, FBX154,OsFbox239, Os_F0304,  OsFBX472, FBX472,OsFbox242, Os_F0706,  OsFBX156, FBX156,OsFbox243, Os_F0545,  OsFBX473, FBX473,OsFbox241, Os_F0593,  OsFBX155, FBX155,OsFbox244, Os_F0497,  OsFBDUF23, FBDUF23,OsFbox245, Os_F0037,  OsFBX157, FBX157,OsFbox246, Os_F0004,  OsFBX158, FBX158,OsFbox247, Os_F0660,  OsFBX159, FBX159,OsFbox249, Os_F0030,  OsFBX160, FBX160,OsFbox250, Os_F0011,  OsFBX161, FBX161,OsFbox251, Os_F0085,  OsFBX162, FBX162,OsFbox252, Os_F0066,  OsFBX163, FBX163,OsFbox253, Os_F0052,  OsFBX164, FBX164,OsFbox254, Os_F0290,  OsFBDUF24, FBDUF24,OsFbox255, Os_F0067,  OsFBX165, FBX165,OsFbox256, Os_F0111,OsFbox257, Os_F0400,  OsFBX167, FBX167,OsFbox258, Os_F0658,  OsFBL22, FBL22,OsFbox178, Os_F0705,  OsFBX113, FBX113,OsFbox261, Os_F0604,  OsFBL24, FBL24,OsFbox262, Os_F0703,OsFbox263, Os_F0721,OsFbox264, Os_F0554,OsFbox265, Os_F0584,  OsFBX168, FBX168,OsFbox266, Os_F0434,  OsFBX169, FBX169,OsFbox268, Os_F0080,  OsFBX170, FBX170,OsFbox269, Os_F0444,  OsFBL25, FBL25,OsFbox270, Os_F0454,  OsFBX171, FBX171,OsFbox271, Os_F0666,OsFbox272, Os_F0626,OsFbox273, Os_F0573,OsFbox274, Os_F0450,  OsFBX172, FBX172,OsFbox275, Os_F0483,  OsFBX173, FBX173,OsFbox276, Os_F0412,  OsFBX174, FBX174,OsFbox277, Os_F0150,  OsFBX175, FBX175,OsFbox183, Fbox183, Os_F0203, F-box119,  OsFBX119, FBX119,OsFbox156, Os_F0603,  OsFBL62, FBL62,OsFbox182, Os_F0223, F-box118,  OsFBX118, FBX118,OsFbox165, Os_F0229, OsFbox166, Os_F0438,  OsFBX105, FBX105,  OsFBX106, FBX106,OsFbox176, Os_F0077,  OsFBDUF18, FBDUF18,OsFbox222, Os_F0047,  OsFBX144, FBX144,OsFbox223, Os_F0055,  OsFBX145, FBX145,OsFbox230, Os_F0308,  OsFBX150, FBX150,OsFbox279, Os_F0100,  OsFBX176, FBX176,OsFbox280, Os_F0260,  OsFBX177, FBX177,OsFbox281, Os_F0379,  OsFBX475, FBX475,OsFbox283, Os_F0368,  OsFBL26, FBL26,OsFbox284, Os_F0301,  OsFBX179, FBX179,OsFbox285, Os_F0166,  OsFBX180, FBX180,OsFbox286, Os_F0619,  OsFBX181, FBX181,OsFbox287, Os_F0750,  OsFBX182, FBX182,OsFbox288, Os_F0622,  OsFBX183, FBX183,OsFbox289, Os_F0510,  OsFBO18, FBO18,OsFbox232, Os_F0576, Ctb1, OsCtb1,  OsFBK15, FBK15,OsFbox191, Os_F0109,  OsFBD10, FBD10,OsFbox033, OsFbox33, Fbox33, Os_F0114, OsFBK1, FBK1 ,  OsFBK1, FBK1,OsTLP3, TLP3, OsTLP7, OsFbox240, Os_F0401,  OsFBT6, FBT6,OsTLP10, TLP10, OsTLP10a, OsTLP10b, OsTLP9, OsFbox267, Os_F0560,  OsFBT9, FBT9,OsFbox189, Os_F0133,  OsFBX125, FBX125, OsBRT1,OsFbox290, Os_F0343,  OsFBX184, FBX184,OsFbox292, Os_F0618,  OsFBDUF30, FBDUF30,OsFbox293, Os_F0585,  OsFBX186, FBX186,OsFbox294, Os_F0333,OsFbox295, Os_F0299,  OsFBDUF32, FBDUF32,OsFbox296, Os_F0612,OsFbox297, Os_F0442,  OsFBX187, FBX187,OsFbox298, Os_F0486,  OsFBL28, FBL28,OsFbox299, Os_F0015,  OsFBX188, FBX188,Fbox-9-pseudo, Os_F0394,  OsFBX497, FBX497,OsFbox300, Os_F0003,OsFbox301, Os_F0013,  OsFBX190, FBX190,OsFbox303, Os_F0405,OsFbox305, Os_F0041,  OsFBX193, FBX193,OsFbox306, Os_F0305,  OsFBX194, FBX194,OsFbox307, Os_F0034,  OsFBX195, FBX195,OsFbox308, Os_F0081,  OsFBX196, FBX196,OsFbox011, OsFbox11, Os_F0196, OsFBX7, FBX7,  OsFBX7, FBX7,OsFbox309, Os_F0312,  OsFBD11, FBD11,OsFbox310, Os_F0057,  OsFBD12, FBD12,OsFbox311, Os_F0115,  OsFBX197, FBX197,OsFbox313, Os_F0104,  OsFBX198, FBX198,OsFbox354, Os_F0275,  OsFBX226, FBX226,OsFbox312, Os_F0546,  OsFBX476, FBX476,OsFbox315, Os_F0369,OsFbox317, Os_F0038,OsFbox318, Os_F0416,  OsFBX201, FBX201,OsFbox319, Os_F0429,  OsFBK17, FBK17,OsFbox320, Os_F0613,  OsFBDUF34, FBDUF34,OsFBX234, OsFbox369, Os_F0191,  OsFBX234, FBX234,OsFbox322, Os_F0520,  OsFBX203, FBX203,OsFbox323, Os_F0105,  OsFBX204, FBX204,OsFbox324, Os_F0220,  OsFBX205, FBX205,OsFbox326, Os_F0327,  OsFBDUF35, FBDUF35,OsFbox327, Os_F0126,  OsFBX206, FBX206,OsFbox328, Os_F0254,  OsFBX207, FBX207,OsFbox329, Os_F0529,  OsFBX208, FBX208,OsFbox330, Os_F0521,  OsFBD13, FBD13,OsFbox331, Os_F0273,  OsFBL32, FBL32,OsFbox332, Os_F0267,  OsFBX209, FBX209,OsFbox333, Os_F0159,  OsFBL33, FBL33,OsFbox334, Os_F0361,OsFbox335, Os_F0487,  OsFBX211, FBX211,OsFbox336, Os_F0293,  OsFBX212, FBX212,OsFbox337, Os_F0302,  OsFBX213, FBX213,OsFbox338, Os_F0537,  OsFBX214, FBX214,OsFbox339, Os_F0636,  OsFBX215, FBX215,OsFbox340, Os_F0124,  OsFBK18, FBK18,OsFbox343, Os_F0141,  OsFBX216, FBX216,OsFbox342, Os_F0418,  OsFBL35, FBL35,OsFbox563, Os_F0773,  OsFBL66, FBL66,OsFbox344, Os_F0183,  OsFBLD3, FBLD3,OsFbox345, Os_F0495,  OsFBX217, FBX217,OsFbox346, Os_F0078,OsFbox347, Os_F0072,  OsFBX220, FBX220,OsFbox348, Os_F0035,  OsFBX221, FBX221,OsFbox350, Os_F0212,  OsFBX222, FBX222,OsFbox351, Os_F0298,  OsFBX223, FBX223,OsFbox352, Os_F0525,  OsFBX224, FBX224,OsFbox353, Os_F0501,  OsFBX225, FBX225,OsFbox355, Os_F0349,  OsFBX227, FBX227,OsFbox356, Os_F0118,  OsFBX229, FBX229,OsFbox357, Os_F0033,  OsFBX230, FBX230,OsFbox358, Os_F0098,  OsFBLD4, FBLD4,OsFbox359, Os_F0431,  OsFBX231, FBX231,OsFbox360, Os_F0235,  OsFBX232, FBX232,OsFbox361, Os_F0171,  OsFBX233, FBX233,OsFbox362, Os_F0439,  OsFBL36, FBL36,OsFbox363, Os_F0353,  OsFBLD5, FBLD5,OsFbox364, Os_F0107,  OsFBLD6, FBLD6,OsFbox365, Os_F0205,  OsFBL37, FBL37,OsFbox366, Os_F0784,  OsFBLD7, FBLD7,OsFbox367, Os_F0432,  OsFBLD8, FBLD8,OsFbox368, Os_F0425,  OsFBDUF36, FBDUF36,OsFbox370, Os_F0625,  OsFBDUF37, FBDUF37,OsFbox371, Os_F0357,  OsFBX235, FBX235,OsFbox609, Os_F0370, OsFKF1,  OsFBO10, FBO10,OsFbox372, Os_F0371,OsFbox377, Os_F0465,OsFbox378, Os_F0217,  OsFBX241, FBX241,OsFbox379, Os_F0261,  OsFBX242, FBX242,OsFbox373, Os_F0163,  OsFBL38, FBL38,OsFbox375, Os_F0062,  OsFBX237, FBX237,OsFbox376, Os_F0063,  OsFBX238, FBX238,OsFbox380, Os_F0423,  OsFBX243, FBX243,OsFbox384, Os_F0579,  OsFBX247, FBX247,OsFbox381, Os_F0656,OsFbox382, Os_F0731,  OsFBX245, FBX245,OsFbox383, Os_F0702,  OsFBX246, FBX246,OsFbox385, Os_F0148,  OsFBX248, FBX248,OsFbox386, Os_F0523,  OsFBX249, FBX249,OsFbox387, Os_F0534,  OsFBX250, FBX250,OsFbox388, Os_F0605,  OsFBX251, FBX251,OsFbox341, Fbox341, Os_F0215,  OsFBL34, FBL34,OsFbox374, Os_F0598,OsFbox217, Os_F0121, MOF, OsMOF,  OsFBX140, FBX140,OsFbox302, Os_F0143,  OsFBL29, FBL29,  OsFBX191, FBX191,OsFbox390, Os_F0759,  OsFBX488, FBX488,OsFbox391, Os_F0082,  OsFBX253, FBX253,OsFbox392, Os_F0313,  OsFBL39, FBL39,OsFbox393, Os_F0462,  OsFBX254, FBX254,OsFbox395, Os_F0032,OsFbox397, Os_F0108,  OsFBX258, FBX258,OsFbox400, Os_F0541,  OsFBK19, FBK19,OsFbox408, Os_F0490,  OsFBX262, FBX262,OsFbox401, Os_F0042,  OsFBDUF39, FBDUF39,OsFbox394, Os_F0722,  OsFBX255, FBX255,OsFbox349, Os_F0252, OsFBA2, FBA2,  OsFBA2, FBA2,OsTLP11, TLP11, OsTLP10, OsFbox278, Os_F0631,  OsFBT10, FBT10,OsTLP7, TLP7, OsTLP11, OsFbox398, Os_F0421,  OsFBT11, FBT11,OsTLP2, OsTLP2a, OsTLP2b, OsTLP12, OsFbox402, Os_F0479,  OsFBT12, FBT12,OsFbox403, Os_F0338,  OsFBX260, FBX260,OsFbox404, Os_F0566,  OsFBDUF40, FBDUF40,OsFbox405, Os_F0623,  OsFBDUF41, FBDUF41,OsFbox406, Os_F0075,  OsFBL40, FBL40,OsFbox407, Os_F0406,  OsFBX261, FBX261,OsFbox409, Os_F0265,  OsFBX263, FBX263,OsFbox410, Os_F0192,  OsFBX264, FBX264,OsFbox411, Os_F0280,  OsFBX265, FBX265,OsFbox413, Os_F0321,  OsFBL41, FBL41,OsFbox414, Os_F0654,  OsFBX267, FBX267,OsFbox415, Os_F0498,OsFbox416, Os_F0464,  OsFBL42, FBL42,OsFbox417, Os_F0682,  OsFBL43, FBL43,OsFbox418, Os_F0453,  OsFBX269, FBX269,OsFbox420, Os_F0206,  OsFBX271, FBX271,OsFbox421, Os_F0249,  OsFBX272, FBX272,OsFbox423, Os_F0386,  OsFBX274, FBX274,OsFbox422, Os_F0246,  OsFBX273, FBX273,OsFbox424, Os_F0348,  OsFBL44, FBL44,OsFbox425, Os_F0168,  OsFBX275, FBX275,OsFbox426, Os_F0184,  OsFBX276, FBX276,OsFbox427, Os_F0221,  OsFBX277, FBX277,OsFbox428, Os_F0440,  OsFBX278, FBX278,OsFbox429, Os_F0367,OsFbox430, Os_F0456,  OsFBX280, FBX280,OsFbox431, Os_F0614,  OsFBX281, FBX281,OsFbox432, Os_F0694,  OsFBL45, FBL45,OsFbox433, Os_F0239,  OsFBX282, FBX282,OsFBX283, OsKIX_6, OsFbox434, Os_F0157,  OsFBX283, FBX283,OsFbox435, Os_F0317,  OsFBO20, FBO20,OsFbox436, Os_F0146,OsFbox437, Os_F0277,  OsFBL46, FBL46,OsFbox438, Os_F0427,  OsFBL47, FBL47,OsFbox439, Os_F0320,OsFbox440, Os_F0542,  OsFBDUF44, FBDUF44,OsFbox441, Os_F0010,  OsFBX288, FBX288,OsFbox444, Os_F0648,  OsFBX291, FBX291,OsFbox445, Os_F0550,  OsFBX479, FBX479,OsFbox447, Os_F0225,  OsFBX293, FBX293,OsFbox446, Os_F0095,  OsFBX292, FBX292,OsFbox448, Os_F0428,  OsFBDUF46, FBDUF46,OsFbox449, Os_F0345,  OsFBL48, FBL48,OsFbox450, Os_F0185,  OsFBX294, FBX294,OsFbox452, Os_F0193,  OsFBL50, FBL50,OsFbox451, Os_F0189,  OsFBL49, FBL49,OsFbox453, Os_F0339,  OsFBD14, FBD14,OsFbox454, Os_F0207,  OsFBL51, FBL51,OsFbox455, Os_F0173,  OsFBX295, FBX295,OsFbox457, Os_F0575,  OsFBX297, FBX297,OsFbox458, Os_F0530,  OsFBX298, FBX298,OsFbox459, Os_F0074,  OsFBX299, FBX299,OsFbox460, Os_F0200,  OsFBX300, FBX300,OsFbox461, Os_F0025,  OsFBX301, FBX301,OsFbox462, Os_F0019,  OsFBX302, FBX302,OsFbox463, Os_F0230,  OsFBX303, FBX303,OsFbox464, Os_F0048,  OsFBX304, FBX304,OsFbox465, Os_F0016,OsFbox466, Os_F0587,  OsFBX306, FBX306,OsFbox467, Os_F0397,  OsFBX307, FBX307,OsFbox468, Os_F0398,  OsFBX308, FBX308,OsFbox469, Os_F0272,  OsFBX309, FBX309,OsFbox470, Os_F0504,  OsFBX311, FBX311,OsFbox471, Os_F0538,  OsFBX312, FBX312,OsFbox473, Os_F0455,  OsFBX314, FBX314,OsFbox474, Os_F0632,  OsFBX315, FBX315,OsFbox475, Os_F0634,  OsFBX316, FBX316,OsFbox476, Os_F0457,  OsFBX317, FBX317,OsFbox477, Os_F0147,  OsFBX318, FBX318,OsFbox478, Os_F0354,  OsFBX319, FBX319,OsFbox479, Os_F0399,  OsFBX320, FBX320,OsFbox480, Os_F0388,OsFbox482, Os_F0167,  OsFBX323, FBX323,OsFbox483, Os_F0233,  OsFBX324, FBX324,OsFbox491, Os_F0580,  OsFBX330, FBX330,OsFbox485, Os_F0149,  OsFBX326, FBX326,OsFbox486, Os_F0355,  OsFBX328, FBX328,OsFbox487, Os_F0548,  OsFBLD9, FBLD9,OsFbox494, Os_F0637,  OsFBX333, FBX333,OsFbox495, Os_F0522,  OsFBX334, FBX334,OsFbox488, Os_F0562,  OsFBX329, FBX329,OsFbox489, Os_F0053,  OsFBA3, FBA3,OsFbox492, Os_F0175,  OsFBX331, FBX331,OsFbox493, Os_F0049,  OsFBX332, FBX332,OsFbox496, Os_F0287,OsFbox497, Os_F0433,  OsFBX336, FBX336,OsFbox498, Os_F0145,  OsFBX337, FBX337,OsFbox499, Os_F0020,  OsFBX338, FBX338,OsFbox500, Os_F0186,  OsFBX339, FBX339,OsFbox501, Os_F0050,  OsFBX340, FBX340,OsFbox472, Fbox472, Os_F0599, OsFBX313, FBX313,  OsFBX313, FBX313,OsFbox399, Os_F0281,  OsFBX259, FBX259,OsFbox503, Os_F0101,  OsFBK20, FBK20,OsFbox504, Os_F0474,  OsFBX341, FBX341,OsFbox505, Os_F0638,  OsFBX342, FBX342,OsFbox507, Os_F0071,  OsFBX343, FBX343,OsFbox508, Os_F0127,  OsFBX344, FBX344,OsFbox510, Os_F0210,  OsFBX346, FBX346,OsFbox511, Os_F0112,  OsFBX347, FBX347,OsFbox512, Os_F0102,  OsFBX348, FBX348,OsFbox513, Os_F0131,  OsFBX349, FBX349,OsFbox514, Os_F0140,  OsFBX350, FBX350,OsFbox515, Os_F0086,  OsFBX351, FBX351,OsFbox517, Os_F0054,  OsFBX353, FBX353,OsFbx352, OsFbox516, Fbx352, Fbox516, Os_F0046,  OsFBX352, FBX352,OsFbox396, Os_F0578, OsMsr9, Msr9,  OsFBX257, FBX257,OsFbox518, Os_F0218,  OsFBX354, FBX354,OsFbox520, Os_F0588,  OsFBX356, FBX356,OsFbox521, Os_F0526,  OsFBX357, FBX357,OsFbox522, Os_F0408,  OsFBX358, FBX358,OsFbox523, Os_F0629,  OsFBX359, FBX359,OsFbox524, Os_F0561,  OsFBX360, FBX360,OsFbox525, Os_F0176,  OsFBX361, FBX361,OsFbox526, Os_F0056,  OsFBX362, FBX362,OsFbox527, Os_F0059,  OsFBX363, FBX363,OsFbox534, Os_F0527,  OsFBX370, FBX370,OsFbox528, Os_F0224,  OsFBO5, FBO5,OsFbox529, Os_F0667, OsEnS-132,  OsFBX364, FBX364,OsFbox531, Os_F0024,  OsFBX367, FBX367,OsFbox533, Os_F0350,  OsFBX369, FBX369,OsFbox535, Os_F0208,  OsFBX371, FBX371,OsFbox536, Os_F0201,  OsFBX372, FBX372,OsFbox537, Os_F0165,  OsFBX373, FBX373,OsFbox538, Os_F0470,OsFbox539, Os_F0316,  OsFBX375, FBX375,OsFbox541, Os_F0409,  OsFBX377, FBX377,OsFbox543, Os_F0162,  OsFBX379, FBX379,OsFbox544, Os_F0652,  OsFBX380, FBX380,OsFbox545, Os_F0535,  OsFBX381, FBX381,OsFbox546, Os_F0513,  OsFBX382, FBX382,OsFbox547, Os_F0119,  OsFBK21, FBK21,OsFbox548, Os_F0160,  OsFBX383, FBX383,OsFbox549, Os_F0255,  OsFBK22, FBK22,OsFbox550, Os_F0263,  OsFBX384, FBX384,OsFbox551, Os_F0073,  OsFBX385, FBX385,OsFbox554, Os_F0677,  OsFBX386, FBX386,OsFbox555, Os_F0152,  OsFBX387, FBX387,OsFbox556, Os_F0154,  OsFBX388, FBX388,OsFbox558, Os_F0376,  OsFBX390, FBX390,OsFbox559, Os_F0572,  OsFBDUF49, FBDUF49,OsFbox560, Os_F0582,  OsFBX391, FBX391,OsFbox561, Os_F0014,  OsFBX392, FBX392,OsFbox564, Os_F0113,  OsFBX394, FBX394,OsFbox562, Os_F0002,OsFbox566, Os_F0279,  OsFBK24, FBK24,OsFbox567, Os_F0713,  OsFBX490, FBX490,OsFbox568, Os_F0335,  OsFBX396, FBX396,OsWD40-184, OsFbox571, Os_F0380,  OsFBW2, FBW2,OsFbox570, Os_F0219,  OsFBX397, FBX397,OsFbox572, Os_F0135,  OsFBX398, FBX398,OsFbox577, Os_F0135,OsFbox578, Os_F0136,  OsFBL53, FBL53,OsFbox579, Os_F0334,OsFbox580, Os_F0096,  OsFBX405, FBX405,OsFbox582, Os_F0511,  OsFBX407, FBX407,OsFbox583, Os_F0363,  OsFBX408, FBX408,OsFbox584, Os_F0231,  OsFBX409, FBX409,OsFbox585, Os_F0294,  OsFBX410, FBX410,OsFbox587, Os_F0097,  OsFBX412, FBX412,OsKMD4, OsFbox596, Os_F0436,  OsFBK25, FBK25,OsFbox595, Os_F0194,  OsFBL54, FBL54,OsFbox597, Os_F0447,  OsFBX420, FBX420,OsFbox598, Os_F0672,  OsFBX480, FBX480,OsFbox600, Os_F0472,  OsFBO4, FBO4,OsFbox602, Os_F0512,  OsFBX421, FBX421,OsFbox594, Os_F0295, Fbox-1,  OsFBX419, FBX419,OsFbox591, Os_F0435, Fbox-5,  OsFBX416, FBX416,OsFbox592, Os_F0128, Fbox-4,  OsFBX417, FBX417,OsFbox590, Os_F0068, Fbox-6,OsFbox589, Os_F0137, Fbox-8,  OsFBX414, FBX414,OsFbox588, Os_F0365, Fbox-10,  OsFBX413, FBX413,OsFbox605, Os_F0437,  OsFBL57, FBL57,OsFbox606, Os_F0155,  OsFBX423, FBX423,OsFbox607, Os_F0045,  OsFBX424, FBX424,OsFbox608, Os_F0043,  OsFBX425, FBX425,OsFbox616, Os_F0314,  OsFBDUF54, FBDUF54,OsFbox617, Os_F0505,  OsFBDUF55, FBDUF55,OsFbox621, Os_F0621,  OsFBDUF59, FBDUF59,OsFbox622, Os_F0499,  OsFBDUF60, FBDUF60,OsFbox623, Os_F0502,  OsFBDUF61, FBDUF61,Os_F0586,OsFbox630, Os_F0318,  OsFBX430, FBX430,OsFbox637, Os_F0061,  OsFBX435, FBX435,OsFbox530, Fbox530, Os_F0198, OsFBX365, FBX365, PEG2,  OsFBX365, FBX365,OsFbox581, Os_F0649,OsFbox636, Fbox636, Os_F0774,  OsFBL63, FBL63,OsFbox481, Os_F0362, FBX322, OsFBX322,  OsFBX322, FBX322,OsFbox552, Os_F0216,  OsFBL52, FBL52,OsFbox603, Os_F0489,  OsFBL56, FBL56,JMJ710, OsFbox611, Os_F0574,  OsFBO15, FBO15,OsFbox610, Os_F0557,  OsFBDUF50, FBDUF50,OsFbox612, Os_F0268,  OsFBDUF51, FBDUF51,OsFbox613, Os_F0243,  OsFBDUF52, FBDUF52,OsFbox614, Os_F0381,  OsFBDUF53, FBDUF53,OsFbox615, Os_F0099,  OsFBX426, FBX426,OsFbox620, Os_F0358,  OsFBDUF58, FBDUF58,OsFbox624, Os_F0226,  OsFBDUF62, FBDUF62,OsFbox627, Os_F0089,  OsFBX427, FBX427,OsFbox628, Os_F0028,OsFbox629, Os_F0564,  OsFBX429, FBX429,OsFbox631, Os_F0064,  OsFBX431, FBX431,OsFbox632, Os_F0391,  OsFBX432, FBX432,OsFbox502, Os_F0060,OsTLP6, TLP6, OsTLP13, OsFbox569, Os_F0461,  OsFBT13, FBT13,OsFbox633, Os_F0413,  OsFBX433, FBX433,OsFbox634, Os_F0372,  OsFBX434, FBX434,OsFbox635, Os_F0310,  OsFBL58, FBL58,OsFbox648, Os_F0414,OsFbox638, Os_F0021,  OsFBX436, FBX436,OsFbox639, Os_F0382,  OsFBX437, FBX437,OsFbox642, Os_F0213,  OsFBO24, FBO24,OsFbox644, Os_F0725,  OsFBX439, FBX439,OsFbox646, Os_F0134,  OsFBX440, FBX440,OsFbox647, Os_F0466,  OsFBX441, FBX441,OsFbox649, Os_F0410,  OsFBX443, FBX443,OsFbox618, Os_F0583,  OsFBDUF56, FBDUF56,OsFbox650, Os_F0568,  OsFBX444, FBX444,OsFbox651, Os_F0018,  OsFBA4, FBA4,OsFbox652, Os_F0284,  OsFBX445, FBX445,OsFbox654, Os_F0092,  OsFBX447, FBX447,OsFbox542, Os_F0480, OsSTA237,  OsFBX378, FBX378,OsFbox553, Os_F0250,  OsFBK23, FBK23,OsFbox619, Os_F0190, OsSTA265,  OsFBDUF57, FBDUF57,OsFbox657, Os_F0500,  OsFBL59, FBL59,OsFbox658, Os_F0589,  OsFBL60, FBL60,OsFbox659, Os_F0424,  OsFBX449, FBX449,OsFbox660, Os_F0569,  OsFBX450, FBX450,OsFbox661, Os_F0665,  OsFBL61, FBL61,OsFbox662, Os_F0567,  OsFBX451, FBX451,OsFbox663, Os_F0276,  OsFBX452, FBX452,OsFbox665, Os_F0555,  OsFBX454, FBX454,OsFbox666, Os_F0411,  OsFBX455, FBX455,OsFbox667, Os_F0594,  OsFBD16, FBD16,OsFbox668, Os_F0389,OsFbox669, Os_F0383,  OsFBX456, FBX456,Os_F0606,OsFbox670, Os_F0419,  OsFBDUF66, FBDUF66,OsFbox671, Os_F0524,  OsFBX457, FBX457,OsFbox673, Os_F0735,  OsFBX460, FBX460,OsFbox674, Os_F0164,  OsFBX462, FBX462,OsFbox676, Os_F0269,  OsFBX463, FBX463,OsFbox677, Os_F0195,  OsFBX464, FBX464,OsFbox678, Os_F0417,Os_F0653,  OsFBDUF5, FBDUF5,Os_F0699,  OsFBX84, FBX84,Os_F0798,Os_F0607,  OsFBL14, FBL14,Os_F0756,  OsFBO17, FBO17,Os_F0796,  OsFBO3, FBO3,Os_F0659,  OsFBDUF26, FBDUF26,Os_F0687,  OsFBL15, FBL15,Os_F0737,Os_F0670,Os_F0669,Os_F0733,  OsFBDUF42, FBDUF42,Os_F0738,Os_F0671,  OsFBDUF43, FBDUF43,Os_F0451,  OsFBX286, FBX286,Os_F0695,  OsFBDUF45, FBDUF45,Os_F0651,Os_F0797,Os_F0781,Os_F0712,Os_F0791,Os_F0640,Os_F0743,Os_F0478,Os_F0647,Os_F0770,Os_F0768,Os_F0676,Os_F0734,  OsFBX485, FBX485,Os_F0571,  OsFBX494, FBX494,Os_F0752,  OsFBL64, FBL64,Os_F0404,  OsFBX500, FBX500,Os_F0726,  OsFBX487, FBX487,Os_F0617,  OsFBX483, FBX483,Os_F0029,  OsFBX501, FBX501,Os_F0724,Os_F0729,Os_F0708,Os_F0297,  OsFBX495, FBX495,Os_F0283,Os_F0782,Os_F0741,Os_F0240,  OsFBX468, FBX468,Os_F0792,Os_F0746,Os_F0786,Os_F0696,Os_F0787,Os_F0766,Os_F0697,Os_F0748,Os_F0764,Os_F0793,Os_F0300,  OsFBX477, FBX477,Os_F0199,  OsFBX478, FBX478,Os_F0765,Os_F0795,Os_F0790,Os_F0779,Os_F0736,Os_F0715,Os_F0740,Os_F0789,Os_F0601,Os_F0661,  OsFBX489, FBX489,Os_F0448,  OsFBX499, FBX499,Os_F0488,  OsFBX496, FBX496,Os_F0783,  OsFBX505, FBX505,Os_F0689,Os_F0711,  OsFBL69, FBL69,Os_F0772,Os_F0627,  OsFBX491, FBX491,OsFbox675, Os_F0744,Os_F0727,Os_F0739, OsFBX2,  OsFBX2, FBX2,Os_F0780, OsFBX9,  OsFBX9, FBX9,Os_F0785, OsEnS-103,  OsFBX228, FBX228,Os_F0723,  OsFBL67, FBL67,Os_F0684,  OsFBX506, FBX506,Os_F0742,Os_F0751,Os_F0253,  OsFBX402, FBX402,Os_F0778,Os_F0610,Os_F0031,Os_F0650,Os_F0794, OsFBDUF48, FBDUF48, PEG3,  OsFBDUF48, FBDUF48,OsFbox625, Os_F0458,OsFbox653, Os_F0172,Os_F0668,  OsFBX504, FBX504,Os_F0762,Os_F0662,  OsFBX502, FBX502,Os_F0390,  OsFBX400, FBX400,Os_F0763,Os_F0776,Os_F0685,OsFbox506, Os_F0596,  OsFBO22, FBO22,Os_F0761, Fbox-7,OsFbox540, Os_F0468,  OsFBX376, FBX376,Os_F0247,  OsFBO6, FBO6,Os_F0138,  OsFBX59, FBX59,OsFbox282, Os_F0643,  OsFBX178, FBX178,Os_F0701, OsAFB6, AFB6, OsAFB5, AFB5,  OsFBL70, FBL70,OsFbox640, Fbox640, Os_F0395, OsFBX438, FBX438,  OsFBX438, FBX438,Os_F0720, FBL55, OsFBL55, OsAFB3, AFB3,  OsFBL55, FBL55,Os_F0344, OsFBL31, FBL31,Os_F0716, OsSHPR,OsTLP4, TLP4, OsTLP14, OsFbox645, Os_F0315,  OsFBT14, FBT14,Os_F0732,OsFbox672, Os_F0707,  OsFBX458, FBX458,  OsFBX459, FBX459,Os_F0757,Os_F0663,Os_F0257, Fbox-2,apo1(t), apo1, SCM2, SCM2/APO1, OsFbox321, Os_F0393, Pbl6/APO1, Pbl6, OsPbl6,  OsFBX202, FBX202,OsFbox664, Os_F0592,  OsFBX453, FBX453,Os_F0710,OsFbox655, Os_F0116,  OsFBD15, FBD15,Os_F0709,OsFbox025, OsFbox25, Os_F0325,  OsFBD5, FBD5,OsFbox586, Os_F0088, Fbox-13,  OsFBX411, FBX411,OsFbox601, Os_F0719,  OsFBL68, FBL68,OsFbox604, Os_F0232,  OsFBX422, FBX422,OsTIR1, OsFbox248, Fbox248, Os_F071, AFB,  OsFBL21, FBL21,OsFbox010, OsFbox10, Os_F0156, OsFBX6,  OsFBX6, FBX6,OsFbox641, Os_F0319,  OsFBO23, FBO23,OsFbox456, Fbox456, Os_F0543,  OsFBX296, FBX296,OsZTL2, OsFbox325, Os_F0374, ZTL1 ,  OsFBO9, FBO9,OsFbox412, Fbox412, Os_F0356,  OsFBX266, FBX266,Os_F0777, OsZYGO1,OsFbox532, Os_F0058,  OsFBX368, FBX368,Os_F0769,Os_F0799,Os_F0700,Os_F0691,Os_F0007,  OsFBX498, FBX498,Os_F0581,OsFbox443, Os_F0084, OsSTA212,  OsFBX290, FBX290,OsFbox557, Fbox557, Os_F0256,  OsFBX389, FBX389,Os_F0745,Os_F0079,  OsFBX399, FBX399,Os_F0758,Os_F0686,Os_F0718,Os_F0771,Os_F0680,Os_F0690, Fbox-12-pseuso,Os_F0753,Os_F0664
38655	19126682	Xu G., Ma H., Nei M., Kong H.	Evolution of F-box genes in plants: different modes of sequence divergence and their relationships with functional diversification.	Proc. Natl. Acad. Sci. U.S.A.	106(3)	835-40	2009	_,_,COI1B,_,COI1,_,TLP8,_,FBOX72,_,D3,_,_,_,BRT1,_,FBOX316,_,EP3,_,ZTL1,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,APO1,_,_,_,_,_,_,_,_,_,_,_,_,_,_,FBOX291,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,LC4,_,_,_,_,_,_,_,WCR1,FBOX58,_,FBOX33,FBOX6,TLP2,TLP1,TLP3,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,SAF,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,TIR1,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,FBOX130,TLP6,TLP5,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,TLP7,TLP9,_,_,_,_,_,_,_,_,_,_,_,FKF1,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,FBOX394,FBOX349,TLP10,TLP11,TLP12,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,FBOX516,FBOX396,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,FBOX2,_,_,_,_,_,_,_,_,_,_,_,TLP13,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,TLP14,_,_,RIP6,_,_,_,_,_,FBOX206,_,_,_,FBOX11,_,ZTL2,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_	OsFbox509, Os_F0258, OsADF, ADF,  OsFBX345, FBX345,,  OsFBX484, FBX484,OsCOI1b, COI1b, OsCOI1H, COI1H, OsFbox260, Fbox260, Os_F0646,  OsFBL23, FBL23, OsCOl-1, COl-1,,OsCOI1a, OsCOI1, Os_F0728, COI1a, F0728,  OsFBL4, FBL4,OsFbox573,OsTLP1, OsTLP1a, OsTLP1b, OsTLP1c, OsTLP8, OsFbox259, Os_F0415,  OsFBT7, FBT7,OsFbox439, Os_F0320,OsFbox072, OsFbox72, Fbox72, Os_F0508, OsEBF2, EBF2,  OsFBL7, FBL7,OsFBX283, OsKIX_6, OsFbox434, Os_F0157,  OsFBX283, FBX283,d3, dwf3, D3/OsMAX2, Os_F0760, SOL1, OsORE9, ORE9, MAX2, OsRFPH2-10, RFPH2-10, OsD3,  OsFBL27, FBL27,OsFbox481, Os_F0362, FBX322, OsFBX322,  OsFBX322, FBX322,OsFbox141, Os_F0122, OsFBX86, FBX86,,OsFbox189, Os_F0133,  OsFBX125, FBX125, OsBRT1,OsFbox453, Os_F0339,  OsFBD14, FBD14,OsFbox316, Fbox316, Os_F0624, OsEBF1, EBF1,  OsFBL30, FBL30,OsFbox010, OsFbox10, Os_F0156, OsFBX6,  OsFBX6, FBX6,EP3/LP, LP, OsLP, OsFbox076, OsFbox76, Os_F0106, OsEP3,  OsFBK5, FBK5,,OsZTL1, OsFbox066, OsFbox66, Os_F0484, OsLKP2, LKP2,  OsFBO8, FBO8,,OsFbox490, Os_F0091,OsFbox576,OsFbox458, Os_F0530,  OsFBX298, FBX298,OsFBX289, OsKIX_7, OsFbox442, Os_F0407, OsEnS-121,  OsFBX289, FBX289,OsFBX270, OsKIX_5, OsFbox419, Os_F0547, OsEnS-118,  OsFBX270, FBX270,OsFbox368, Os_F0425,  OsFBDUF36, FBDUF36,OsFbox232, Os_F0576, Ctb1, OsCtb1,  OsFBK15, FBK15,OsFbox565, Os_F0027,  OsFBX395, FBX395,OsFbox575,OsFbox361, Os_F0171,  OsFBX233, FBX233,OsFbox389, Os_F0673,  OsFBX252, FBX252,OsFbox473, Os_F0455,  OsFBX314, FBX314,OsFbox401, Os_F0042,  OsFBDUF39, FBDUF39,OsFbox284, Os_F0301,  OsFBX179, FBX179,OsFbox315, Os_F0369,apo1(t), apo1, SCM2, SCM2/APO1, OsFbox321, Os_F0393, Pbl6/APO1, Pbl6, OsPbl6,  OsFBX202, FBX202,OsFbox343, Os_F0141,  OsFBX216, FBX216,OsFbox309, Os_F0312,  OsFBD11, FBD11,OsFbox311, Os_F0115,  OsFBX197, FBX197,OsFbox337, Os_F0302,  OsFBX213, FBX213,OsFbox297, Os_F0442,  OsFBX187, FBX187,Os_F0138,  OsFBX59, FBX59,OsFbox300, Os_F0003,OsFbox301, Os_F0013,  OsFBX190, FBX190,OsFbox333, Os_F0159,  OsFBL33, FBL33,OsFbox329, Os_F0529,  OsFBX208, FBX208,OsFbox346, Os_F0078,OsFbox290, Os_F0343,  OsFBX184, FBX184,Os_F0772,OsFbox324, Os_F0220,  OsFBX205, FBX205,OsFbox291, Os_F0516,  OsFBX185, FBX185,OsFbox351, Os_F0298,  OsFBX223, FBX223,,OsFbox356, Os_F0118,  OsFBX229, FBX229,OsFbox510, Os_F0210,  OsFBX346, FBX346,OsFbox364, Os_F0107,  OsFBLD6, FBLD6,OsFbox514, Os_F0140,  OsFBX350, FBX350,OsFbox020, OsFbox20, Os_F0674,  OsFBX16, FBX16,OsFbox003, OsFbox3, Os_F0209, OsFBX3,  OsFBX3, FBX3,OsFbox004, OsFbox4, Os_F0387,  OsFBDUF1, FBDUF1,OsFbox012, OsFbox12, Os_F0539, OsFBX8,OsFbox008, OsFbox8, Os_F0329,  OsFBDUF3, FBDUF3,Fbox-9-pseudo, Os_F0394,  OsFBX497, FBX497,OsFbox007, OsFbox7, Os_F0351,OsFbox009, OsFbox9, Os_F0616,  OsFBDUF4, FBDUF4,OsFbox017, OsFbox17, Os_F0392,  OsFBX14, FBX14,OsFbox470, Os_F0504,  OsFBX311, FBX311,OsFbox018, OsFbox18, Os_F0259,  OsFBX15, FBX15,OsFbox021, OsFbox21, Os_F0117,OsFbox156, Os_F0603,  OsFBL62, FBL62,OsFbox022, OsFbox22, Os_F0366,  OsFBD2, FBD2,OsFbox024, OsFbox24, Os_F0087,OsFbox027, OsFbox27, Os_F0595,  OsFBL1, FBL1,OsFbox001, OsFbox1, Os_F0615, OsFBX1,  OsFBX1, FBX1,OsFbox013, OsFbox13, Os_F0590, OsFBX10,  OsFBX10, FBX10,OsFbox014, OsFbox14, Os_F0467, OsFBX11,  OsFBX11, FBX11,OsFbox015, OsFbox15, Os_F0481, OsFBX12,  OsFBX12, FBX12,OsFbox016, OsFbox16, Os_F0471, OsFBX13,  OsFBX13, FBX13,OsFbox026, OsFbox26, Os_F0242,  OsFBX18, FBX18,OsFbox028, OsFbox28, Os_F0158,  OsFBL2, FBL2,OsFbox032, OsFbox32, Os_F0271,  OsFBX21, FBX21,OsFbox040, OsFbox40, Os_F0476,  OsFBX26, FBX26,OsFbox029, OsFbox29, Os_F0384,  OsFBX482, FBX482,OsFbox031, OsFbox31, Os_F0326,  OsFBX20, FBX20,OsFbox030, OsFbox30, Os_F0577,  OsFBX19, FBX19,OsFbox035, OsFbox35, Os_F0556,  OsFBX22, FBX22,OsFbox036, OsFbox36, Os_F0051,  OsFBX23, FBX23,OsFbox037, OsFbox37, Os_F0332,  OsFBX24, FBX24,OsFbox038, OsFbox38, Os_F0519,OsFbox041, OsFbox41, Os_F0730,OsFbox042, OsFbox42, Os_F0608,OsFbox043, OsFbox43, Os_F0563,  OsFBDUF8, FBDUF8,OsFbox044, OsFbox44, Os_F0491,  OsFBL3, FBL3,OsFbox046, OsFbox46, Os_F0609,  OsFBX28, FBX28,OsFbox047, OsFbox47, Os_F0754,  OsFBX29, FBX29,OsFbox048, OsFbox48, Os_F0202,  OsFBX30, FBX30,OsFbox049, OsFbox49, Os_F0364,  OsFBL5, FBL5,OsFbox051, OsFbox51, Os_F0330,  OsFBX31, FBX31,OsFbox054, OsFbox54, Os_F0420,OsFbox055, OsFbox55, Os_F0463,  OsFBDUF10, FBDUF10,OsFbox056, OsFbox56, Os_F0469,  OsFBX33, FBX33,OsFbox057, OsFbox57, Os_F0570,  OsFBDUF11, FBDUF11,OsFbox059, OsFbox59, Os_F0692,  OsFBL6, FBL6,OsFbox060, OsFbox60, Os_F0125,  OsFBK2, FBK2,OsFbox061, OsFbox61, Os_F0473,  OsFBDUF12, FBDUF12,OsFbox062, OsFbox62, Os_F0282,  OsFBX34, FBX34,OsFbox063, OsFbox63, Os_F0090,  OsFBX35, FBX35,OsFbox064, OsFbox64, Os_F0285,  OsFBX36, FBX36,OsFbox065, OsFbox65, Os_F0311,  OsFBX37, FBX37,OsFbox068, OsFbox68, Os_F0346,  OsFBLD1, FBLD1,OsFbox069, OsFbox69, Os_F0227,  OsFBD6, FBD6,OsFbox070, OsFbox70, Os_F0151,  OsFBX39, FBX39,OsFbox071, OsFbox71, Os_F0306,  OsFBA1, FBA1,OsFbox053, OsFbox53, Os_F0309, OsLC4,  OsFBX32, FBX32,OsFbox045, OsFbox45, Os_F0307,  OsFBX27, FBX27,OsFbox073, OsFbox73, Os_F0359,  OsFBK3, FBK3,OsKMD1, OsFbox074, OsFbox74, Os_F0323,  OsFBK4, FBK4,OsFbox075, OsFbox75, Os_F0514,  OsFBX40, FBX40,OsFbox077, OsFbox77, Os_F0558,OsFbox078, OsFbox78, Os_F0445,OsFbox079, OsFbox79, Os_F0641,  OsFBX43, FBX43,OsFbox052, OsFbox52, Os_F0755, OsWCR1,  OsFBO2, FBO2,OsFbox058, OsFbox58, Os_F0591, DLN37, OsDLN37, CHR707, OsCHR707,  OsFBO7, FBO7,OsFbox466, Os_F0587,  OsFBX306, FBX306,OsFbox033, OsFbox33, Fbox33, Os_F0114, OsFBK1, FBK1 ,  OsFBK1, FBK1,OsFbox006, OsFbox6, Os_F0083, OsFBX5, OsSTA12,  OsFBX5, FBX5,OsTLP12, OsTLP2, OsFbox039, OsFbox39, Os_F0683,  OsFBT2, FBT2,OsTLP9, TLP9, OsTLP9a, OsTLP9b, OsTLP9c, OsTLP1, OsFbox034, OsFbox34, Os_F0675,  OsFBT1, FBT1,OsTLP5, TLP5, OsTLP3, OsFbox050, OsFbox50, Os_F0396,  OsFBT3, FBT3,OsFbox080, OsFbox80, Os_F0533,  OsFBX44, FBX44,OsFbox081, OsFbox81, Os_F0375,  OsFBX45, FBX45,OsFbox082, OsFbox82, Os_F0509,  OsFBX46, FBX46,OsFbox083, OsFbox83, Os_F0360,  OsFBX47, FBX47,OsFbox084, OsFbox84, Os_F0452,  OsFBK6, FBK6,,OsFbox086, OsFbox86, Os_F0482,  OsFBX48, FBX48,OsFbox087, OsFbox87, Os_F0536,  OsFBL8, FBL8,OsFbox088, OsFbox88, Os_F0475,  OsFBX49, FBX49,OsRALyase, OsFbox090, OsFbox90, Os_F0337,  OsFBO11, FBO11,OsFbox091, OsFbox91, Os_F0517,  OsFBK7, FBK7,OsFbox092, OsFbox92, Os_F0704,  OsFBX51, FBX51,OsFbox093, OsFbox93, Os_F0270,  OsFBD7, FBD7,OsFbox094, OsFbox94, Os_F0336,  OsFBL9, FBL9,OsKMD3, OsFbox096, OsFbox96, Os_F0169,  OsFBK8, FBK8,OsFbox023, OsFbox23, Os_F0211, OsSTA20,  OsFBD3, FBD3,OsFbox095, OsFbox95, Os_F0274, OsSTA64,  OsFBX52, FBX52,SaF, OsFbox019, OsFbox19, Os_F0070,  OsFBD1, FBD1,OsFbox097, OsFbox97, Os_F0402,  OsFBX53, FBX53,OsFbox098, OsFbox98, Os_F0174,  OsFBK9, FBK9,OsFbox099, OsFbox99, Os_F0180,  OsFBX466, FBX466,OsFbox101, Os_F0678,OsFbox102, Os_F0177,  OsFBO12, FBO12,OsFbox103, Os_F0039,  OsFBX57, FBX57,MAIF1, OsFbox104, Os_F0528,  OsFBDUF13, FBDUF13,OsFbox105, Os_F0549,  OsFBX58, FBX58,OsFbox106, Os_F0496,  OsFBD8, FBD8,OsFbox108, Os_F0236,  OsFBX60, FBX60,OsFbox110, Os_F0551,  OsFBX61, FBX61,OsFbox109, Os_F0628,  OsFBK10, FBK10,OsFbox111, Os_F0005,  OsFBX62, FBX62,OsFbox112, Os_F0657,OsFbox113, Os_F0234,  OsFBX63, FBX63,OsFbox114, Os_F0103,  OsFBX64, FBX64,OsFbox115, Os_F0639,  OsFBX65, FBX65,OsFbox116, Os_F0291,  OsFBX66, FBX66,OsFbox120, Os_F0441,  OsFBX70, FBX70,OsFbox121, Os_F0352,OsFbox122, Os_F0288,  OsFBX72, FBX72,OsFbox123, Os_F0289,  OsFBX73, FBX73,OsFbox124, Os_F0262,  OsFBX74, FBX74,OsFbox128, Os_F0506,  OsFBL10, FBL10,OsFbox085, OsFbox85, Os_F0602,OsFbox127, Os_F0532,  OsFBX76, FBX76,OsFbox067, OsFbox67, Os_F0477,  OsFBX38, FBX38,OsFbox131, Os_F0292,  OsFBX77, FBX77,OsFbox135, Os_F0341,  OsFBX81, FBX81,OsFbox137, Os_F0544,  OsFBX82, FBX82,OsFbox136, Os_F0187,OsFbox134, Os_F0443,  OsFBX80, FBX80,OsFbox133, Os_F0449,  OsFBX79, FBX79,OsTIR1, OsFbox248, Fbox248, Os_F071, AFB,  OsFBL21, FBL21,OsFbox132, Os_F0228,  OsFBX78, FBX78,OsFbox138, Os_F0340,  OsFBX83, FBX83,OsFbox140, Os_F0065,OsFbox142, Os_F0023,  OsFBX87, FBX87,OsFbox129, Os_F0178,  OsFBK11, FBK11,OsFbox143, Os_F0129,  OsFBX88, FBX88,OsFbox152, Os_F0251,  OsFBX95, FBX95,OsFbox154, Os_F0130,  OsFBDUF15, FBDUF15,OsFbox158, Os_F0008,  OsFBX98, FBX98,OsFbox159, Os_F0006,  OsFBX99, FBX99,OsFbox160, Os_F0017,OsFbox144, Os_F0237,  OsFBX89, FBX89,OsFbox145, Os_F0026,  OsFBX90, FBX90,OsFbox146, Os_F0179,  OsFBX91, FBX91,OsFbox147, Os_F0266,  OsFBX92, FBX92,OsFbox148, Os_F0426,  OsFBX93, FBX93,OsFbox150, Os_F0123,  OsFBX94, FBX94,OsFbox151, Os_F0222,  OsFBK13, FBK13,OsFbox155, Os_F0503,  OsFBX96, FBX96,OsFbox234, Os_F0170,  OsFBL20, FBL20,OsFbox157, Os_F0188,  OsFBX97, FBX97,OsFbox161, Os_F0076,  OsFBX101, FBX101,OsFbox126, Os_F0788,  OsFBX486, FBX486,OsFbox162, Os_F0012,OsFbox163, Os_F0009,  OsFBX103, FBX103,JMJ711, OsFbox149, Os_F0347, DLN88, OsDLN88,  OsFBO14, FBO14,OsFbox089, OsFbox89, Os_F0377,  OsFBX50, FBX50,OsFbox118, Os_F0460,  OsFBX68, FBX68,  OsFBX69, FBX69,OsFbox119, Os_F0693,OsFbox125, Os_F0403,  OsFBX75, FBX75,OsFbox164, Os_F0040,  OsFBX104, FBX104,OsFbox167, Os_F0244,OsFbox168, Os_F0132,  OsFBO16, FBO16,OsFbox169, Os_F0378,  OsFBDUF16, FBDUF16,OsFbox170, Os_F0296,  OsFBDUF17, FBDUF17,OsFbox171, Os_F0153,  OsFBX108, FBX108,OsFbox172, Os_F0303,  OsFBX109, FBX109,OsFbox173, Os_F0094,  OsFBX110, FBX110,OsFbox174, Os_F0714,  OsFBX111, FBX111,OsFbox484, Os_F0373,  OsFBX325, FBX325,OsFbox449, Os_F0345,  OsFBL48, FBL48,OsFbox117, Os_F0679,  OsFBX67, FBX67,OsFBK12, OsFbox130, Os_F0642,  OsFBK12, FBK12,OsTLP14, TLP14, OsTLP6, OsFbox139, Os_F0681,  OsFBT5, FBT5,OsTLP8, LP8, OsTLP8a, OsTLP8b, OsTLP8c, OsTLP8d, OsTLP5, OsFbox107, Os_F0446,  OsFBT4, FBT4,OsFbox175, Os_F0633,  OsFBX112, FBX112,OsFbox177, Os_F0120,  OsFBDUF19, FBDUF19,OsFbox179, Os_F0161,  OsFBX114, FBX114,OsFbox180, Os_F0342,OsFbox181, Os_F0655,  OsFBX117, FBX117,OsFbox184, Os_F0197,  OsFBX120, FBX120,OsFbox185, Os_F0197,  OsFBX121, FBX121,OsFbox186, Os_F0322,OsFbox187, Os_F0245,  OsFBX123, FBX123,OsFbox188, Os_F0182,  OsFBX124, FBX124,OsFbox190, Os_F0204,  OsFBD9, FBD9,OsFbox192, Os_F0688,  OsFBX126, FBX126,OsFbox193, Os_F0515,OsFbox237, Os_F0241,  OsFBX153, FBX153,OsFbox194, Os_F0635,  OsFBX470, FBX470,OsFbox196, Os_F0324,  OsFBL13, FBL13,OsFbox195, Os_F0144,  OsFBL12, FBL12,OsFbox197, Os_F0620,  OsFBX127, FBX127,OsFbox198, Os_F0644,  OsFBDUF20, FBDUF20,OsFbox199, Os_F0630,  OsFBX128, FBX128,OsFbox200, Os_F0645,  OsFBDUF21, FBDUF21,OsFbox201, Os_F0552,  OsFBX129, FBX129,OsFbox202, Os_F0749,OsFbox203, Os_F0600,  OsFBK14, FBK14,OsFbox204, Os_F0139,  OsFBX130, FBX130,OsFbox205, Os_F0044,  OsFBX131, FBX131,OsDRF1, OsFbox209, Os_F0001,  OsFBX133, FBX133,OsFbox207, Os_F0611,  OsFBLD2, FBLD2,OsFbox208, Os_F0775,  OsFBX132, FBX132,OsFbox211, Os_F0331,  OsFBX135, FBX135,OsFbox212, Os_F0238,  OsFBL17, FBL17,OsFbox213, Os_F0422,  OsFBX136, FBX136,OsFbox214, Os_F0430,  OsFBX137, FBX137,OsFbox215, Os_F0110,  OsFBX138, FBX138,OsFbox216, Os_F0328,  OsFBX139, FBX139,OsFbox218, Os_F0597,  OsFBDUF22, FBDUF22,OsFbox219, Os_F0485,  OsFBX141, FBX141,OsFbox220, Os_F0518,  OsFBX142, FBX142,OsFbox221, Os_F0036,  OsFBX143, FBX143,OsFbox231, Os_F0565,  OsFBX151, FBX151,OsFbox224, Os_F0093,OsFbox225, Os_F0540,  OsFBX146, FBX146,OsFbox226, Os_F0022,  OsFBX147, FBX147,OsFbox227, Os_F0286,  OsFBL19, FBL19,OsFbox228, Os_F0553,  OsFBX148, FBX148,OsFbox229, Os_F0493,  OsFBX149, FBX149,OsWD40-110, OsFbox233, Os_F0069,  OsFBW1, FBW1,OsFbox235, Os_F0248,  OsFBX152, FBX152,OsFbox236, Os_F0264,  OsFBX493, FBX493,OsFbox238, Os_F0385,  OsFBX154, FBX154,OsFbox239, Os_F0304,  OsFBX472, FBX472,OsFbox242, Os_F0706,  OsFBX156, FBX156,OsFbox243, Os_F0545,  OsFBX473, FBX473,OsFbox241, Os_F0593,  OsFBX155, FBX155,OsFbox244, Os_F0497,  OsFBDUF23, FBDUF23,OsFbox245, Os_F0037,  OsFBX157, FBX157,OsFbox246, Os_F0004,  OsFBX158, FBX158,OsFbox247, Os_F0660,  OsFBX159, FBX159,OsFbox249, Os_F0030,  OsFBX160, FBX160,OsFbox608, Os_F0043,  OsFBX425, FBX425,OsFbox250, Os_F0011,  OsFBX161, FBX161,OsFbox251, Os_F0085,  OsFBX162, FBX162,OsFbox252, Os_F0066,  OsFBX163, FBX163,OsFbox253, Os_F0052,  OsFBX164, FBX164,OsFbox254, Os_F0290,  OsFBDUF24, FBDUF24,OsFbox255, Os_F0067,  OsFBX165, FBX165,OsFbox256, Os_F0111,OsFbox257, Os_F0400,  OsFBX167, FBX167,OsFbox258, Os_F0658,  OsFBL22, FBL22,OsFbox261, Os_F0604,  OsFBL24, FBL24,OsFbox262, Os_F0703,OsFbox263, Os_F0721,OsFbox264, Os_F0554,OsFbox265, Os_F0584,  OsFBX168, FBX168,OsFbox266, Os_F0434,  OsFBX169, FBX169,OsFbox268, Os_F0080,  OsFBX170, FBX170,OsFbox269, Os_F0444,  OsFBL25, FBL25,OsFbox270, Os_F0454,  OsFBX171, FBX171,OsFbox271, Os_F0666,OsFbox272, Os_F0626,OsFbox273, Os_F0573,OsFbox274, Os_F0450,  OsFBX172, FBX172,OsFbox275, Os_F0483,  OsFBX173, FBX173,OsFbox276, Os_F0412,  OsFBX174, FBX174,OsFbox277, Os_F0150,  OsFBX175, FBX175,OsFbox183, Fbox183, Os_F0203, F-box119,  OsFBX119, FBX119,OsFbox182, Os_F0223, F-box118,  OsFBX118, FBX118,OsFbox222, Os_F0047,  OsFBX144, FBX144,OsFbox223, Os_F0055,  OsFBX145, FBX145,OsFbox230, Os_F0308,  OsFBX150, FBX150,OsFbox279, Os_F0100,  OsFBX176, FBX176,OsFbox280, Os_F0260,  OsFBX177, FBX177,OsFbox281, Os_F0379,  OsFBX475, FBX475,OsFbox283, Os_F0368,  OsFBL26, FBL26,OsFbox285, Os_F0166,  OsFBX180, FBX180,OsFbox286, Os_F0619,  OsFBX181, FBX181,OsFbox287, Os_F0750,  OsFBX182, FBX182,OsFbox289, Os_F0510,  OsFBO18, FBO18,OsFbox191, Os_F0109,  OsFBD10, FBD10,OsTLP3, TLP3, OsTLP7, OsFbox240, Os_F0401,  OsFBT6, FBT6,OsTLP10, TLP10, OsTLP10a, OsTLP10b, OsTLP9, OsFbox267, Os_F0560,  OsFBT9, FBT9,OsFbox292, Os_F0618,  OsFBDUF30, FBDUF30,OsFbox293, Os_F0585,  OsFBX186, FBX186,OsFbox294, Os_F0333,OsFbox295, Os_F0299,  OsFBDUF32, FBDUF32,OsFbox296, Os_F0612,OsFbox298, Os_F0486,  OsFBL28, FBL28,OsFbox299, Os_F0015,  OsFBX188, FBX188,OsFbox303, Os_F0405,OsFbox305, Os_F0041,  OsFBX193, FBX193,OsFbox306, Os_F0305,  OsFBX194, FBX194,OsFbox307, Os_F0034,  OsFBX195, FBX195,OsFbox609, Os_F0370, OsFKF1,  OsFBO10, FBO10,OsFbox308, Os_F0081,  OsFBX196, FBX196,OsFbox310, Os_F0057,  OsFBD12, FBD12,OsFbox313, Os_F0104,  OsFBX198, FBX198,OsFbox354, Os_F0275,  OsFBX226, FBX226,OsFbox312, Os_F0546,  OsFBX476, FBX476,OsFbox317, Os_F0038,OsFbox318, Os_F0416,  OsFBX201, FBX201,OsFbox319, Os_F0429,  OsFBK17, FBK17,OsFbox320, Os_F0613,  OsFBDUF34, FBDUF34,OsFbox282, Os_F0643,  OsFBX178, FBX178,OsFbox563, Os_F0773,  OsFBL66, FBL66,OsFbox322, Os_F0520,  OsFBX203, FBX203,OsFbox323, Os_F0105,  OsFBX204, FBX204,OsFbox326, Os_F0327,  OsFBDUF35, FBDUF35,OsFbox327, Os_F0126,  OsFBX206, FBX206,OsFbox328, Os_F0254,  OsFBX207, FBX207,OsFbox330, Os_F0521,  OsFBD13, FBD13,OsFbox331, Os_F0273,  OsFBL32, FBL32,OsFbox332, Os_F0267,  OsFBX209, FBX209,OsFbox334, Os_F0361,OsFbox335, Os_F0487,  OsFBX211, FBX211,OsFbox336, Os_F0293,  OsFBX212, FBX212,OsFbox338, Os_F0537,  OsFBX214, FBX214,OsFbox339, Os_F0636,  OsFBX215, FBX215,OsFbox340, Os_F0124,  OsFBK18, FBK18,OsFbox342, Os_F0418,  OsFBL35, FBL35,OsFbox344, Os_F0183,  OsFBLD3, FBLD3,OsFbox345, Os_F0495,  OsFBX217, FBX217,OsFbox347, Os_F0072,  OsFBX220, FBX220,OsFbox348, Os_F0035,  OsFBX221, FBX221,OsFbox350, Os_F0212,  OsFBX222, FBX222,OsFbox352, Os_F0525,  OsFBX224, FBX224,OsFbox353, Os_F0501,  OsFBX225, FBX225,OsFbox355, Os_F0349,  OsFBX227, FBX227,OsFbox357, Os_F0033,  OsFBX230, FBX230,OsFbox025, OsFbox25, Os_F0325,  OsFBD5, FBD5,OsFbox358, Os_F0098,  OsFBLD4, FBLD4,OsFbox359, Os_F0431,  OsFBX231, FBX231,OsFbox360, Os_F0235,  OsFBX232, FBX232,OsFbox362, Os_F0439,  OsFBL36, FBL36,OsFbox363, Os_F0353,  OsFBLD5, FBLD5,OsFbox365, Os_F0205,  OsFBL37, FBL37,OsFbox366, Os_F0784,  OsFBLD7, FBLD7,OsFbox367, Os_F0432,  OsFBLD8, FBLD8,OsFbox370, Os_F0625,  OsFBDUF37, FBDUF37,OsFbox371, Os_F0357,  OsFBX235, FBX235,OsFBX234, OsFbox369, Os_F0191,  OsFBX234, FBX234,OsFbox372, Os_F0371,OsFbox377, Os_F0465,OsFbox378, Os_F0217,  OsFBX241, FBX241,OsFbox379, Os_F0261,  OsFBX242, FBX242,OsFbox373, Os_F0163,  OsFBL38, FBL38,OsFbox375, Os_F0062,  OsFBX237, FBX237,OsFbox376, Os_F0063,  OsFBX238, FBX238,OsFbox380, Os_F0423,  OsFBX243, FBX243,OsFbox384, Os_F0579,  OsFBX247, FBX247,OsFbox381, Os_F0656,OsFbox382, Os_F0731,  OsFBX245, FBX245,OsFbox383, Os_F0702,  OsFBX246, FBX246,OsFbox385, Os_F0148,  OsFBX248, FBX248,OsFbox386, Os_F0523,  OsFBX249, FBX249,OsFbox387, Os_F0534,  OsFBX250, FBX250,OsFbox388, Os_F0605,  OsFBX251, FBX251,OsFbox341, Fbox341, Os_F0215,  OsFBL34, FBL34,OsFbox374, Os_F0598,OsFbox217, Os_F0121, MOF, OsMOF,  OsFBX140, FBX140,OsFbox302, Os_F0143,  OsFBL29, FBL29,  OsFBX191, FBX191,OsFbox390, Os_F0759,  OsFBX488, FBX488,OsFbox391, Os_F0082,  OsFBX253, FBX253,Os_F0767, OsTIR1, TIR1, OsAFB4, AFB4 ,  OsFBL71, FBL71,OsFbox392, Os_F0313,  OsFBL39, FBL39,OsFbox393, Os_F0462,  OsFBX254, FBX254,OsFbox395, Os_F0032,OsFbox397, Os_F0108,  OsFBX258, FBX258,OsFbox400, Os_F0541,  OsFBK19, FBK19,OsFbox408, Os_F0490,  OsFBX262, FBX262,OsFbox394, Os_F0722,  OsFBX255, FBX255,OsFbox349, Os_F0252, OsFBA2, FBA2,  OsFBA2, FBA2,OsTLP11, TLP11, OsTLP10, OsFbox278, Os_F0631,  OsFBT10, FBT10,OsTLP7, TLP7, OsTLP11, OsFbox398, Os_F0421,  OsFBT11, FBT11,OsTLP2, OsTLP2a, OsTLP2b, OsTLP12, OsFbox402, Os_F0479,  OsFBT12, FBT12,OsFbox403, Os_F0338,  OsFBX260, FBX260,OsFbox404, Os_F0566,  OsFBDUF40, FBDUF40,OsFbox405, Os_F0623,  OsFBDUF41, FBDUF41,OsFbox406, Os_F0075,  OsFBL40, FBL40,OsFbox407, Os_F0406,  OsFBX261, FBX261,OsFbox409, Os_F0265,  OsFBX263, FBX263,OsFbox410, Os_F0192,  OsFBX264, FBX264,OsFbox411, Os_F0280,  OsFBX265, FBX265,OsFbox413, Os_F0321,  OsFBL41, FBL41,OsFbox414, Os_F0654,  OsFBX267, FBX267,OsFbox415, Os_F0498,OsFbox416, Os_F0464,  OsFBL42, FBL42,OsFbox417, Os_F0682,  OsFBL43, FBL43,OsFbox418, Os_F0453,  OsFBX269, FBX269,OsFbox420, Os_F0206,  OsFBX271, FBX271,OsFbox421, Os_F0249,  OsFBX272, FBX272,OsFbox423, Os_F0386,  OsFBX274, FBX274,OsFbox422, Os_F0246,  OsFBX273, FBX273,OsFbox424, Os_F0348,  OsFBL44, FBL44,OsFbox425, Os_F0168,  OsFBX275, FBX275,OsFbox426, Os_F0184,  OsFBX276, FBX276,OsFbox427, Os_F0221,  OsFBX277, FBX277,OsFbox428, Os_F0440,  OsFBX278, FBX278,OsFbox429, Os_F0367,OsFbox430, Os_F0456,  OsFBX280, FBX280,OsFbox431, Os_F0614,  OsFBX281, FBX281,OsFbox432, Os_F0694,  OsFBL45, FBL45,OsFbox433, Os_F0239,  OsFBX282, FBX282,OsFbox435, Os_F0317,  OsFBO20, FBO20,OsFbox436, Os_F0146,OsFbox437, Os_F0277,  OsFBL46, FBL46,OsFbox438, Os_F0427,  OsFBL47, FBL47,OsFbox440, Os_F0542,  OsFBDUF44, FBDUF44,OsFbox441, Os_F0010,  OsFBX288, FBX288,OsFbox444, Os_F0648,  OsFBX291, FBX291,OsFbox445, Os_F0550,  OsFBX479, FBX479,OsFbox447, Os_F0225,  OsFBX293, FBX293,OsFbox446, Os_F0095,  OsFBX292, FBX292,OsFbox448, Os_F0428,  OsFBDUF46, FBDUF46,OsFbox450, Os_F0185,  OsFBX294, FBX294,OsFbox452, Os_F0193,  OsFBL50, FBL50,OsFbox451, Os_F0189,  OsFBL49, FBL49,OsFbox454, Os_F0207,  OsFBL51, FBL51,OsFbox455, Os_F0173,  OsFBX295, FBX295,OsFbox457, Os_F0575,  OsFBX297, FBX297,OsFbox459, Os_F0074,  OsFBX299, FBX299,OsFbox460, Os_F0200,  OsFBX300, FBX300,OsFbox461, Os_F0025,  OsFBX301, FBX301,OsFbox462, Os_F0019,  OsFBX302, FBX302,OsFbox463, Os_F0230,  OsFBX303, FBX303,OsFbox464, Os_F0048,  OsFBX304, FBX304,OsFbox465, Os_F0016,OsFbox467, Os_F0397,  OsFBX307, FBX307,OsFbox468, Os_F0398,  OsFBX308, FBX308,OsFbox469, Os_F0272,  OsFBX309, FBX309,OsFbox471, Os_F0538,  OsFBX312, FBX312,OsFbox474, Os_F0632,  OsFBX315, FBX315,OsFbox476, Os_F0457,  OsFBX317, FBX317,OsFbox477, Os_F0147,  OsFBX318, FBX318,OsFbox478, Os_F0354,  OsFBX319, FBX319,OsFbox479, Os_F0399,  OsFBX320, FBX320,OsFbox480, Os_F0388,OsFbox482, Os_F0167,  OsFBX323, FBX323,OsFbox483, Os_F0233,  OsFBX324, FBX324,OsFbox491, Os_F0580,  OsFBX330, FBX330,OsFbox485, Os_F0149,  OsFBX326, FBX326,OsFbox486, Os_F0355,  OsFBX328, FBX328,OsFbox494, Os_F0637,  OsFBX333, FBX333,OsFbox495, Os_F0522,  OsFBX334, FBX334,OsFbox488, Os_F0562,  OsFBX329, FBX329,OsFbox492, Os_F0175,  OsFBX331, FBX331,OsFbox493, Os_F0049,  OsFBX332, FBX332,OsFbox496, Os_F0287,OsFbox498, Os_F0145,  OsFBX337, FBX337,OsFbox499, Os_F0020,  OsFBX338, FBX338,OsFbox500, Os_F0186,  OsFBX339, FBX339,OsFbox412, Fbox412, Os_F0356,  OsFBX266, FBX266,OsFbox472, Fbox472, Os_F0599, OsFBX313, FBX313,  OsFBX313, FBX313,OsFbox399, Os_F0281,  OsFBX259, FBX259,OsFbox501, Os_F0050,  OsFBX340, FBX340,OsFbox503, Os_F0101,  OsFBK20, FBK20,OsFbox505, Os_F0638,  OsFBX342, FBX342,OsFbox507, Os_F0071,  OsFBX343, FBX343,OsFbox508, Os_F0127,  OsFBX344, FBX344,OsFbox511, Os_F0112,  OsFBX347, FBX347,OsFbox512, Os_F0102,  OsFBX348, FBX348,OsFbox513, Os_F0131,  OsFBX349, FBX349,OsFbox515, Os_F0086,  OsFBX351, FBX351,OsFbx352, OsFbox516, Fbx352, Fbox516, Os_F0046,  OsFBX352, FBX352,OsFbox396, Os_F0578, OsMsr9, Msr9,  OsFBX257, FBX257,OsFbox517, Os_F0054,  OsFBX353, FBX353,OsFbox518, Os_F0218,  OsFBX354, FBX354,OsFbox520, Os_F0588,  OsFBX356, FBX356,OsFbox521, Os_F0526,  OsFBX357, FBX357,OsFbox522, Os_F0408,  OsFBX358, FBX358,OsFbox523, Os_F0629,  OsFBX359, FBX359,OsFbox525, Os_F0176,  OsFBX361, FBX361,OsFbox526, Os_F0056,  OsFBX362, FBX362,OsFbox527, Os_F0059,  OsFBX363, FBX363,OsFbox528, Os_F0224,  OsFBO5, FBO5,OsFbox534, Os_F0527,  OsFBX370, FBX370,OsFbox529, Os_F0667, OsEnS-132,  OsFBX364, FBX364,OsFbox531, Os_F0024,  OsFBX367, FBX367,OsFbox532, Os_F0058,  OsFBX368, FBX368,OsFbox533, Os_F0350,  OsFBX369, FBX369,OsFbox535, Os_F0208,  OsFBX371, FBX371,OsFbox536, Os_F0201,  OsFBX372, FBX372,OsFbox537, Os_F0165,  OsFBX373, FBX373,OsFbox538, Os_F0470,OsFbox539, Os_F0316,  OsFBX375, FBX375,OsFbox540, Os_F0468,  OsFBX376, FBX376,OsFbox543, Os_F0162,  OsFBX379, FBX379,OsFbox544, Os_F0652,  OsFBX380, FBX380,OsFbox545, Os_F0535,  OsFBX381, FBX381,OsFbox546, Os_F0513,  OsFBX382, FBX382,OsFbox547, Os_F0119,  OsFBK21, FBK21,OsFbox548, Os_F0160,  OsFBX383, FBX383,OsFbox549, Os_F0255,  OsFBK22, FBK22,OsFbox550, Os_F0263,  OsFBX384, FBX384,OsFbox551, Os_F0073,  OsFBX385, FBX385,OsFbox556, Os_F0154,  OsFBX388, FBX388,OsFbox558, Os_F0376,  OsFBX390, FBX390,OsFbox559, Os_F0572,  OsFBDUF49, FBDUF49,OsFbox561, Os_F0014,  OsFBX392, FBX392,OsFbox564, Os_F0113,  OsFBX394, FBX394,OsFbox562, Os_F0002,OsFbox566, Os_F0279,  OsFBK24, FBK24,OsFbox567, Os_F0713,  OsFBX490, FBX490,OsFbox568, Os_F0335,  OsFBX396, FBX396,OsWD40-184, OsFbox571, Os_F0380,  OsFBW2, FBW2,OsFbox570, Os_F0219,  OsFBX397, FBX397,OsFbox572, Os_F0135,  OsFBX398, FBX398,OsFbox577, Os_F0135,OsFbox579, Os_F0334,OsFbox580, Os_F0096,  OsFBX405, FBX405,OsFbox582, Os_F0511,  OsFBX407, FBX407,OsFbox584, Os_F0231,  OsFBX409, FBX409,OsFbox585, Os_F0294,  OsFBX410, FBX410,OsFbox587, Os_F0097,  OsFBX412, FBX412,OsKMD4, OsFbox596, Os_F0436,  OsFBK25, FBK25,OsFbox597, Os_F0447,  OsFBX420, FBX420,OsFbox598, Os_F0672,  OsFBX480, FBX480,OsFbox604, Os_F0232,  OsFBX422, FBX422,OsFbox594, Os_F0295, Fbox-1,  OsFBX419, FBX419,OsFbox592, Os_F0128, Fbox-4,  OsFBX417, FBX417,OsFbox589, Os_F0137, Fbox-8,  OsFBX414, FBX414,OsFbox588, Os_F0365, Fbox-10,  OsFBX413, FBX413,OsFbox586, Os_F0088, Fbox-13,  OsFBX411, FBX411,OsFbox605, Os_F0437,  OsFBL57, FBL57,OsFbox606, Os_F0155,  OsFBX423, FBX423,OsFbox607, Os_F0045,  OsFBX424, FBX424,Os_F0029,  OsFBX501, FBX501,OsFbox616, Os_F0314,  OsFBDUF54, FBDUF54,OsFbox617, Os_F0505,  OsFBDUF55, FBDUF55,OsFbox621, Os_F0621,  OsFBDUF59, FBDUF59,OsFbox623, Os_F0502,  OsFBDUF61, FBDUF61,OsFbox637, Os_F0061,  OsFBX435, FBX435,OsFbox641, Os_F0319,  OsFBO23, FBO23,OsFbox636, Fbox636, Os_F0774,  OsFBL63, FBL63,OsFbox552, Os_F0216,  OsFBL52, FBL52,OsFbox603, Os_F0489,  OsFBL56, FBL56,JMJ710, OsFbox611, Os_F0574,  OsFBO15, FBO15,OsFbox612, Os_F0268,  OsFBDUF51, FBDUF51,OsFbox613, Os_F0243,  OsFBDUF52, FBDUF52,OsFbox620, Os_F0358,  OsFBDUF58, FBDUF58,OsFbox627, Os_F0089,  OsFBX427, FBX427,OsFbox628, Os_F0028,OsFbox629, Os_F0564,  OsFBX429, FBX429,OsFbox632, Os_F0391,  OsFBX432, FBX432,OsFbox502, Os_F0060,OsFbox633, Os_F0413,  OsFBX433, FBX433,OsFbox634, Os_F0372,  OsFBX434, FBX434,,OsFbox648, Os_F0414,OsFbox638, Os_F0021,  OsFBX436, FBX436,OsFbox639, Os_F0382,  OsFBX437, FBX437,OsFbox642, Os_F0213,  OsFBO24, FBO24,Os_F0739, OsFBX2,  OsFBX2, FBX2,OsFbox644, Os_F0725,  OsFBX439, FBX439,OsFbox647, Os_F0466,  OsFBX441, FBX441,OsFbox649, Os_F0410,  OsFBX443, FBX443,OsFbox615, Os_F0099,  OsFBX426, FBX426,OsFbox651, Os_F0018,  OsFBA4, FBA4,OsFbox652, Os_F0284,  OsFBX445, FBX445,OsFbox655, Os_F0116,  OsFBD15, FBD15,OsFbox657, Os_F0500,  OsFBL59, FBL59,OsFbox658, Os_F0589,  OsFBL60, FBL60,OsFbox659, Os_F0424,  OsFBX449, FBX449,OsFbox660, Os_F0569,  OsFBX450, FBX450,OsFbox661, Os_F0665,  OsFBL61, FBL61,OsFbox662, Os_F0567,  OsFBX451, FBX451,OsFbox663, Os_F0276,  OsFBX452, FBX452,OsFbox664, Os_F0592,  OsFBX453, FBX453,OsFbox665, Os_F0555,  OsFBX454, FBX454,OsFbox666, Os_F0411,  OsFBX455, FBX455,OsFbox667, Os_F0594,  OsFBD16, FBD16,OsFbox668, Os_F0389,OsFbox669, Os_F0383,  OsFBX456, FBX456,OsFbox670, Os_F0419,  OsFBDUF66, FBDUF66,OsFbox671, Os_F0524,  OsFBX457, FBX457,OsFbox673, Os_F0735,  OsFBX460, FBX460,OsFbox674, Os_F0164,  OsFBX462, FBX462,OsFbox676, Os_F0269,  OsFBX463, FBX463,Os_F0738,OsFbox677, Os_F0195,  OsFBX464, FBX464,OsFbox678, Os_F0417,Os_F0653,  OsFBDUF5, FBDUF5,Os_F0699,  OsFBX84, FBX84,Os_F0798,Os_F0796,  OsFBO3, FBO3,Os_F0659,  OsFBDUF26, FBDUF26,Os_F0737,,  OsFBX219, FBX219,,  OsFBX240, FBX240,Os_F0669,Os_F0670,Os_F0671,  OsFBDUF43, FBDUF43,Os_F0451,  OsFBX286, FBX286,Os_F0695,  OsFBDUF45, FBDUF45,,  OsFBX366, FBX366,Os_F0734,  OsFBX485, FBX485,Os_F0571,  OsFBX494, FBX494,Os_F0752,  OsFBL64, FBL64,Os_F0404,  OsFBX500, FBX500,Os_F0726,  OsFBX487, FBX487,Os_F0617,  OsFBX483, FBX483,Os_F0724,Os_F0729,Os_F0708,Os_F0297,  OsFBX495, FBX495,Os_F0283,Os_F0782,Os_F0741,IBF1, OsFBX310, FBX310,  OsFBX310, FBX310,Os_F0448,  OsFBX499, FBX499,Os_F0783,  OsFBX505, FBX505,Os_F0689,Os_F0711,  OsFBL69, FBL69,Os_F0627,  OsFBX491, FBX491,Os_F0780, OsFBX9,  OsFBX9, FBX9,,OsFbox625, Os_F0458,,,  OsFBL65, FBL65,,,,,,,,,,,,,,OsFbox506, Os_F0596,  OsFBO22, FBO22,Os_F0247,  OsFBO6, FBO6,Os_F0344, OsFBL31, FBL31,OsFbox210,  OsFBX134, FBX134,OsFbox626,  OsFBDUF64, FBDUF64,OsFbox672, Os_F0707,  OsFBX458, FBX458,  OsFBX459, FBX459,Os_F0756,  OsFBO17, FBO17,,,,,,,,OsFbox574,,,,OsFbox542, Os_F0480, OsSTA237,  OsFBX378, FBX378,OsFbox002, OsFbox2, OsH2B.6, H2B.6,OsFbox614, Os_F0381,  OsFBDUF53, FBDUF53,Os_F0794, OsFBDUF48, FBDUF48, PEG3,  OsFBDUF48, FBDUF48,OsFbox610, Os_F0557,  OsFBDUF50, FBDUF50,OsFbox675, Os_F0744,OsFbox654, Os_F0092,  OsFBX447, FBX447,OsFbox619, Os_F0190, OsSTA265,  OsFBDUF57, FBDUF57,OsFbox553, Os_F0250,  OsFBK23, FBK23,OsFbox650, Os_F0568,  OsFBX444, FBX444,OsFbox646, Os_F0134,  OsFBX440, FBX440,OsFbox487, Os_F0548,  OsFBLD9, FBLD9,OsFbox635, Os_F0310,  OsFBL58, FBL58,OsTLP6, TLP6, OsTLP13, OsFbox569, Os_F0461,  OsFBT13, FBT13,OsFbox178, Os_F0705,  OsFBX113, FBX113,Os_F0698,  OsFBX461, FBX461,OsFbox631, Os_F0064,  OsFBX431, FBX431,OsFbox630, Os_F0318,  OsFBX430, FBX430,OsFbox560, Os_F0582,  OsFBX391, FBX391,OsFbox504, Os_F0474,  OsFBX341, FBX341,OsFbox530, Fbox530, Os_F0198, OsFBX365, FBX365, PEG2,  OsFBX365, FBX365,OsFbox581, Os_F0649,OsFbox475, Os_F0634,  OsFBX316, FBX316,OsFbox590, Os_F0068, Fbox-6,OsFbox599,  OsFBX492, FBX492,OsIRL6 ,Os_F0732,OsFbox591, Os_F0435, Fbox-5,  OsFBX416, FBX416,OsFbox555, Os_F0152,  OsFBX387, FBX387,OsFbox624, Os_F0226,  OsFBDUF62, FBDUF62,OsFbox656,  OsFBX448, FBX448,OsFbox519,  OsFBX355, FBX355,OsFbox602, Os_F0512,  OsFBX421, FBX421,OsTLP4, TLP4, OsTLP14, OsFbox645, Os_F0315,  OsFBT14, FBT14,OsFbox595, Os_F0194,  OsFBL54, FBL54,OsMADS69, MADS69,OsRIP6,  OsRING78, RING78,Os_F0720, FBL55, OsFBL55, OsAFB3, AFB3,  OsFBL55, FBL55,OsFbox640, Fbox640, Os_F0395, OsFBX438, FBX438,  OsFBX438, FBX438,OsFbox100,  OsFBX55, FBX55,,Os_F0785, OsEnS-103,  OsFBX228, FBX228,OsAFB2, ABF2, OsAFB2-1, OsAFB2-2, OsFbox206, Os_F0492, OsTIR1, TIR1,  OsFBL16, FBL16,OsFbox288, Os_F0622,  OsFBX183, FBX183,OsFbox497, Os_F0433,  OsFBX336, FBX336,Os_F0661,  OsFBX489, FBX489,OsFbox011, OsFbox11, Os_F0196, OsFBX7, FBX7,  OsFBX7, FBX7,OsFbox489, Os_F0053,  OsFBA3, FBA3,OsZTL2, OsFbox325, Os_F0374, ZTL1 ,  OsFBO9, FBO9,OsFbox583, Os_F0363,  OsFBX408, FBX408,OsFbox578, Os_F0136,  OsFBL53, FBL53,Os_F0488,  OsFBX496, FBX496,OsFbox557, Fbox557, Os_F0256,  OsFBX389, FBX389,OsFbox443, Os_F0084, OsSTA212,  OsFBX290, FBX290,OsFbox456, Fbox456, Os_F0543,  OsFBX296, FBX296,,,,,,,,OsFbox524, Os_F0561,  OsFBX360, FBX360,Os_F0769,Os_F0685,Os_F0662,  OsFBX502, FBX502,Os_F0776,OsFbox005, OsFbox5, Os_F0747, OsFBX4,  OsFBX4, FBX4,Os_F0007,  OsFBX498, FBX498,OsFbox653, Os_F0172,Os_F0668,  OsFBX504, FBX504,Os_F0723,  OsFBL67, FBL67,Os_F0581,OsFbox622, Os_F0499,  OsFBDUF60, FBDUF60,OsFbox165, Os_F0229, OsFbox166, Os_F0438,  OsFBX105, FBX105,  OsFBX106, FBX106,,OsFbox593, Os_F0278, Fbox-3,  OsFBX418, FBX418,,OsFbox541, Os_F0409,  OsFBX377, FBX377,OsFbox618, Os_F0583,  OsFBDUF56, FBDUF56,Os_F0684,  OsFBX506, FBX506
38656	17284833	Takai R., Kaneda T., Isogai A., Takayama S., Fang-Sik Che	A new method of defense response analysis using a transient expression system in rice protoplasts.	Biosci. Biotechnol. Biochem.	71(2)	590-3	2007	PR10A,WRKY70,CHT1	PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsWRKY70,Cht1*(Chi1), Ch16, Cht1, CHT-1, CH16, RC24, OsChia1a, OsChia1, Chi1, Cht1*, Chi-1, Cht-1, Cht1, RCC1, OsCht-1, PR3, OsPR3
38657	16272430	Ishikawa R., Tamaki S., Yokoi S., Inagaki N., Shinomura T., Takano M., Shimamoto K.	Suppression of the floral activator Hd3a is the principal cause of the night break effect in rice.	Plant Cell	17(12)	3326-36	2005	RFT1,CAB1R,SE1,PHYB,HD3A,LHD3,FTL4,FTL12,FTL6,FTL5,FTL1,PHYA,GI	FT-L 3, OsFTL3, FTL3, FT-L3, RFT, OsRFT1,cab1R, LHCP, CAB, OsLhcb1, Lhcb1, Cab1, OsCAB1, Lhcb1b, OsLhcb1b, CAB2R,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, OsHd1,  Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,phyB, PHYB1, OsPHYB, OsphyB, OsYHB, YHB, OsPHYB/OsYHB,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,PHYC, OsPHYC, OsPHYCa, OsPHYCb, OsLHD3,OsFT, osFT, FT-L 4, OsFTL4, FT-L4, FT-1, OsFT-1,OsFTL12, FT-L11,FT-L 6, OsFTL6, FT-L6,FT-L 5, OsFTL5, FT-L5,FTL, FT-L1, OsFTL1, FTL1,phyA, PHYA* (phyA), PHYA*, Phya, PHY18, phy 18, OsPHYA ,OsGI, Gi, Os-GI
38658	11489174	N Sugiyama, T Izawa, T Oikawa, K Shimamoto	Light regulation of circadian clock-controlled gene expression in rice.	Plant J.	26(6)	607-15	2001	CAB1R	cab1R, LHCP, CAB, OsLhcb1, Lhcb1, Cab1, OsCAB1, Lhcb1b, OsLhcb1b, CAB2R
38659	0	Akiyama T., Kaku H., Shibuya N.	Purification and Properties of a Basic Endo-l,3-Beta-Glucanase from Rice (Oryza sativa L.)	Plant cell physiology	37(5)	702-705	1996	GNS4	OsPR2, PR2, Gns4, OsGns4, OsGLN2
38660	19236476	Michael A Grillo, Li C., Angela M Fowlkes, Trevor M Briggeman, Zhou A., Douglas W Schemske, Sang T.	Genetic architecture for the adaptive origin of annual wild rice, oryza nivara.	Evolution	63(4)	870-83	2009		
38661	8522180	Y L Lee, P F Chang, K W Yeh, T L Jinn, C C Kung, W C Lin, Y M Chen, C Y Lin	Cloning and characterization of a cDNA encoding an 18.0-kDa class-I low-molecular-weight heat-shock protein from rice.	Gene	165(2)	223-7	1995	HSP18.0	OsHSP18.0-CI, HSP18.0-CI, OsHsp18.0, OsHSP18.0, Oshsp18.0, OsSHSP1, SHSP1, OsMSR3, MSR3, OsHSP20, HSP20, OsHSP18.6, HSP18.6
38662	9784845	D Y Huang, A Y Wang	Purification and characterization of sucrose synthase isozymes from etiolated rice seedlings.	Biochem. Mol. Biol. Int.	46(1)	107-13	1998	RSUS1,RSUS3,RSUS2	sus1, RSus1(t), SUS1, SS2, OsScS2, RSs2, RSus1, SuSy1, OsSUS1, RSS2, RSus2, OsRSUS1,RSus3(t), SUS3, SS3, OsScS3, RSs3, RSus3, OsSUS3, RSS3, OsEnS-111, Susy3, OsSusy3,sus2, RSus2(t), SUS2, SS1, OsScS1, RSs1, RSus2, OsSUS2, RSS1, RSus1, OsSusy2, Susy2, OsRSUS1, RSUS1
38663	16669782	Kazuko Yamaguchi-Shinozaki, Shinozaki K.	Transcriptional regulatory networks in cellular responses and tolerance to dehydration and cold stresses.	Annu Rev Plant Biol	57	781-803	2006	DREB1D,DREB1A,DREB1B,DREB1C,DREB2A,TRAB1	OsDREB1D, CBF4, ERF116, OsERF#116, OsERF116, AP2/EREBP#054, AP2/EREBP54, OsCbf1, OsCBF1,OsDREB1A, Os DREB1A, CBF3, OsCBF3, OsDREB1A/OsCBF3, ERF24, OsERF24, OsERF024, OsERF#024, AP2/EREBP#114, AP2/EREBP114, OsDREBL,OsDREB1B, ERF31, OsERF031, OsERF#031, OsERF31, AP2/EREBP#169, AP2/EREBP169, OsDREB1b, OsDREB1C, OsCBF1, CBF1,OsDREB1C, CBF1, ERF26, OsERF026, OsERF#026, OsERF26, AP2/EREBP#098, AP2/EREBP98, OsCBF2, CBF2,OsDREB2A, OsDREB2a, ERF40, OsERF#040, OsERF040, OsERF40, AP2/EREBP#167, AP2/EREBP167,OsbZIP66, OsABF5, Osbzip66, OsTRAB1, bZIP66, ABF5
38664	0	Takeda T., Toyofuku K., Matsukura C., Yamaguchi J.	Sugar transporters involved in flowering and grain development of rice	J. Plant Physiol.	158	465-470	2001	MST5,SUT3	OsMST5, OsSTP5, STP5,OsSUT3(t), OsSUT3, SUC3, OsSUT2
38665	0	NGAMPANYA B., Takeda T., Sonoda Y., Narangajavana J., Ikeda A., Yamaguchi J.	Characterization of OsSUT2 cDNA expressed before flowering stage of rice	RGN	19	49-51	2002	SUT3	OsSUT3(t), OsSUT3, SUC3, OsSUT2
38666	0	Watanabe S., Sakai T., Goto S., Yaginuma T., Hayakawa T., Yamaya T.	Expression of NADH-Dependent Glutamate Synthase in Response to the Supply of Nitrogen in Rice Cells in Suspension Culture	Plant Cell Physiol.	37(7)	1034-1037	1996	GLT1	OsGLT1, OsNADH-GOGAT1, NADH-GOGAT1, OsNADH-GOGAT, GOGAT, NADH-GOGAT, OsGOGAT1, GOGAT1, OsGLU1
38667	0	Abdullahi A.S., Soom M.A.M., Ahmad D., Shariff A.R.M.	Characterization of rice (Oryza sativa) evapotranspiration using micro paddy lysimeter and class "A" pan in tropical environments	Aust J Crop Sci	7	650-658	2013		
38668	0	P?rez-Bernal M.a, Salinas D.L.b, Rigo M.D.a	Viability in rice seeds obtained from plants developed in vitro [Viabilidad de semillas de arroz provenientes de plantas obtenidas in vitro]	Acta Agron.	62	114-119	2013		
38669	0	Serrat X.a, Esteban R.a, Pe?as G.a, Catal? M.M.b, Mel? E.a, Messeguer J.a	Direct and reverse pollen-mediated gene flow between GM rice and red rice weed	AoB Plants	5		2013		
38670	0	Rangel P.N., Vianello R.P., Melo A.T.O., Rangel P.H.N., Mendon?a J.A., Brondani C.	Yield QTL analysis of Oryza sativa x O. glumaepatula introgression lines	Pesqui. Agropecu. Bras.	48	280-286	2013		
38671	0	Bianchet P.a, Sangoi L.b, Filho O.K.b, Miquelluti D.J.b, Ferreira M.A.c, Vieira J.c	Single mixed formulations of inoculants with diazotrophic bacteria, under different nitrogen rates on the paddy rice crop [Formula??es simples e mista de inoculantes com bact?rias diazotr?ficas, sob diferentes doses de nitrog?nio na cultura do arroz irrigado]	Semina:Ciencias Agrarias	34	2655-2666	2013		
38672	0	Chauhan B.S.a, Abeysekara A.S.K.b, Kulatunga S.D.b, Madusanka I.U.b	Weed Growth and grain yield, as Affected by Herbicides, in Dry-seeded Rice in Sri Lanka	Journal of Crop Improvement	27	419-429	2013		
38673	24280628	Lakshmanan M.a, Mohanty B.a, Lee D.Y.a b	Identifying essential genes/reactions of the rice photorespiration by in silico model-based analysis	Rice (N Y)	6	20	2013		
38674	0	Khan S.A.a, Shinwari Z.K.a, Ashiq Rabbani M.b	Study of total seed protein pattern of rice (Oryza sativa L.) breeding lines of Pakistan through SDS-PAGE	Pak J Bot	45	871-876	2013		
38675	0	Elec V.a, Quimio C.A.b, Mendoza R.a, Sajise A.G.C.a, Beebout S.E.J.a, Gregorio G.B.a, Singh R.K.a	Maintaining elevated Fe2+ concentration in solution culture for the development of a rapid and repeatable screening technique for iron toxicity tolerance in rice (Oryza sativa L.)	Plant Soil	372	253-264	2013		
38676	0	Ludwig J.a, Moura A.B.b, Gomes C.B.c	Potential of microbiolization of rice seeds with rhizobacteria for root-knot nematode biocontrol [Potencial da microbioliza??o de sementes de arroz com rizobact?rias para o biocontrole do nematoide das galhas]	Trop Plant Pathol	38	264-268	2013		
38677	0	Wankhade S.D.a b, Sanz A.a	Chronic mild salinity affects source leaves physiology and productivity parameters of rice plants (Oryza sativa L., cv. Taipei 309)	Plant Soil	367	663-672	2013		
38678	0	Chauhan B.S., Abugho S.B.	Growth of Echinochloa glabrescens in Response to Rice Cultivar and Density	Journal of Crop Improvement	27	391-405	2013		
38679	0	de Melo Carvalho M.T.a b d, Madari B.E.a, Bastiaans L.b, van Oort P.A.J.b e, Heinemann A.B.a, da Silva M.A.S.a, Nunes Maia A.H.c, Meinke H.b d	Biochar improves fertility of a clay soil in the Brazilian Savannah: Short term effects and impact on rice yield	Journal of Agriculture and Rural Development in the Tropics and Subtropics	114	101-107	2013		
38680	0	Fageria N.K., Knupp A.M.	UPLAND RICE PHENOLOGY AND NUTRIENT UPTAKE IN TROPICAL CLIMATE	J Plant Nutr	36	1-14	2013		
38681	0	Schmidt F.a, Fortes M.A.b, Wesz J.b, Buss G.L.b, de Sousa R.O.c	The impact of water management on iron toxicity in flooded rice [Impacto do manejo da ?gua na toxidez por ferro no arroz irrigado por alagamento]	Rev. Bras. Cienc. Solo	37	1226-1235	2013		
38682	0	Saragih A.A.a, Puteh A.B.a, Ismail M.R.a, Monjurul Alam Mondal M.a b	pollen quality traits of cultivated (Oryza sativa L. Ssp. Indica) and weedy (Oryza sativa var. Nivara) rice to water stress at reproductive stage	Aust J Crop Sci	7	1106-1112	2013		
38683	0	Shahrestani M.R.a, Esmaeili M.A.a, Pirdashti H.a, Abdollahi S.P.b	A survey on the morphological effects of rice promising lines (Oryza sativa L.) In response to the changes in planting density and nitrogen content	Middle East Journal of Scientific Research	16	466-474	2013		
38684	0	Wathugala D.L., Jayakodi T.S.D., Ranagalage A.S., Kumarasinghe H.M.S.	Evaluation of allelopathic potential of Sri Lankan improved rice (Oryza sativa L.) varieties for control of Echinochloa crus-galli	Research on Crops	14	985-994	2013		
38685	23752350	Yuan Y., Xu W., He X., Liu H., Cao S., Qi X., Huang K., Luo Y.	Effects of genetically modified T2A-1 rice on the GI health of rats after 90-day supplement.	Sci Rep	3	1962	2013		
38686	23661564	Wang D., Timmis J.N.	Cytoplasmic organelle DNA preferentially inserts into open chromatin	Genome Biol Evol	5	1060-1064	2013		
38687	0	dos Santos R.S.a b, Kr?ger M.M.b, Pegoraro C.b, Madabula F.P.a b, da Maia L.C.b, Rombaldi C.V.a c, de Oliveira A.C.a b	Transcriptional Regulation of Seven ERFs in Rice Under Oxygen Depletion and Iron Overload Stress	Trop Plant Biol	6	16-25	2013		
38688	0	Faraji F.a, Esfahani M.a, Kavousi M.b, Nahvi M.b, Forghani A.a	Effect of nitrogen fertilizer levels on Fe and protein content, grain breakage and grain yield of rice (Oryza sativa L. Cv. Khazar)	Biharean Biologist	7	25-28	2013		
38689	24783785	Duangsee K.a, Bunnag S.b c d	Influence of nutrient composition and plant growth regulators on callus induction and plant regeneration in glutinous rice (Oryza sativa L.)	Pakistan Journal of Biological Sciences	17	98-103	2013		
38690	0	Anghinoni I.a, de Campos Carmona F.b, Genro Junior S.A.b, Boeni M.b	Potassium fertilization in flooded rice according to soil cation exchange capacity [Aduba??o pot?ssica em arroz irrigado conforme a capacidade de troca cati?nica do solo]	Pesqui. Agropecu. Bras.	48	1481-1488	2013		
38691	0	Fidelis R.R.a, do Nascimento L.C.b, dos Santos M.M.b, Silva G.F.b, Tonello L.P.b, De Oliveira T.C.b	Effect of phosphorus fertilization on physiological quality of rice seeds cultivated in upland [Efeito da aduba??o fosfatada na qualidade fisiol?gica de sementes de arroz cultivadas em terras altas]	Bioscience Journal	29	15-21	2013		
38692	0	Rahim H.A.a, Bhuiyan M.A.R.b, Saad A.c, Azhar M.a, Wickneswari R.c	Identification of virulent pathotypes causing rice blast disease (Magnaporthe oryzae) and study on single nuclear gene inheritance of blast resistance in F2 population derived from pongsu seribu 2 ~ mahshuri	Aust J Crop Sci	7	1597-1605	2013		
38693	0	Cl?ment G.a, Louvel D.b	Rice varietal improvement for Mediterranean France [Am?lioration vari?tale du riz pour la France m?diterran?enne]	Cahiers Agricultures	22	459-465	2013		
38694	0	Reis E.F.a, Borges G.R.a, Da Silva J.G.b, De Oliveira J.P.b	Grain losses in the mechanized harvest of upland rice as a function of speed displacement and reel [Perdas de gr?os na colheita mecanizada do arroz de terras altas em fun??o das velocidades de deslocamento e do molinete]	Comunicata Scientiae	4	12-19	2013		
38695	0	Lee S.T., Huang W.L.	Cytokinin, auxin, and abscisic acid affects sucrose metabolism conduce to de novo shoot organogenesis in rice (Oryza sativa L.) callus	Botanical Studies	54		2013	SUT1,PIN1B,CIN1,LEA20,RR21,SUT2	OsSUT1, OsSUT2,PIN1A, OsPIN1A, OsPIN1a, REH1, OsPIN1, OsPIN1b, REH1/OsPIN1,OSCIN1, OsCIN1,OsLEA20, OsLEA1, OsLEA1a,OsRR21, Rrb1, Orr1, OsRR19, RR19, OsRRB1, ORR1,OsSUT2(t), SUT2M, OsSUT2, OsSUT2M, OsSUT5
38696	0	Zahra A.R.F.a, De Costa D.M.a, De Costa W.A.J.M.b	Identification of differentially-expressed genes in response to salt stress in the salt-tolerant Sri Lankan rice variety At354	Journal of the National Science Foundation of Sri Lanka	41	93-112	2013		
38697	0	Charng Y.C., Liu L.Y.D.	The extent of Ds1 transposon to enrich transcriptomes and proteomes by exonization	Botanical Studies	54		2013		
38698	0	Mannan M.A., Sarker T.C., Akhter M.T., Kabir A.H., Alam M.F.	Indirect plant regeneration in aromatic rice (Oryza sativa L.) var. 'Kalijira' and 'Chinigura'	Acta Agric. Slov.	101	231-238	2013		
38699	0	Campos-Soriano L.a, Val? G.b c, Lupotto E.c, San Segundo B.a	Investigation of rice blast development in susceptible and resistant rice cultivars using a gfp-expressing Magnaporthe oryzae isolate	Plant Pathol.	62	1030-1037	2013		
38700	0	Lang N.T.a, Nha C.T.a, Ha P.T.T.a, Buu B.C.b	Quantitative trait loci (QTLs) associated with drought tolerance in rice (Oryza sativa L.)	Sabrao Journal of Breeding and Genetics	45	409-421	2013		
38701	0	Fageria N.K.a, Moraes O.P.a, Vasconcelos M.J.b	UPLAND RICE GENOTYPES EVALUATION FOR PHOSPHORUS USE EFFICIENCY	J Plant Nutr	36	1868-1880	2013		
38702	23685778	Davidek T.a, Illmann S.a, Rytz A.b, Blank I.a	A holistic approach towards defined product attributes by Maillard-type food processing	Food and Function	4	1105-1110	2013		
38703	0	Sankam P.a, Punvittayagul C.a, Sringam K.b, Chaiyasut C.c, Wongpoomchai R.a	Antimutagenicity and anticlastogenicity of glutinous purple rice hull using in vitro and in vivo testing systems	Molecular and Cellular Toxicology	9	169-176	2013		
38704	0	El Rabey H.a b, Salem K.F.c, Mattar M.Z.d	The genetic diversity and relatedness of eight rice (Oryza sativa L.) cultivars as revealed by AFLP and SSRs markers	Life Science Journal	10	1471-1479	2013		
38705	0	Othman R.a b, Naher U.A.b, Yusoff S.Z.a	Effect of urea-N on growth and indoleacetic acid production of Stenotrophomonas maltophilia (Sb16) isolated from rice growing soils in Malaysia	Chilean Journal of Agricultural Research	73	187-192	2013		
38706	0	Wahler D.a, Schauser L.b, Bendiek J.a, Grohmann L.a	Next-Generation Sequencing as a Tool for Detailed Molecular Characterisation of Genomic Insertions and Flanking Regions in Genetically Modified Plants: A Pilot Study Using a Rice Event Unauthorised in the EU	Food Analytical Methods	6	1718-1727	2013		
38707	0	Petrovic T.a, Burgess L.W.b, Cowie I.c, Warren R.A.a, Harvey P.R.a	Diversity and fertility of Fusarium sacchari from wild rice (Oryza australiensis) in Northern Australia, and pathogenicity tests with wild rice, rice, sorghum and maize	European Journal of Plant Pathology	136	773-788	2013		
38708	0	Gurmani A.R.a, Bano A.b, Ullah N.c, Khan H.a, Jahangir M.a, Flowers T.J.d	Exogenous abscisic acid(ABA) and silicon (Si) promote salinity tolerance by reducing sodium (Na+) transport and bypass flow in rice (Oryza sativa indica)	Aust J Crop Sci	7	1219-1226	2013		
38709	0	Somsana P.a, Wattana P.b, Suriharn B.b, Sanitchon J.a	Stability and genotype by environment interactions for grain anthocyanin content of thai black glutinous upland rice (Oryza sativa)	Sabrao Journal of Breeding and Genetics	45	523-532	2013		
38710	0	Premakumara G.A.S.a, Abeysekera W.K.S.M.a, Ratnasooriya W.D.b, Chandrasekharan N.V.c, Bentota A.P.d	Antioxidant, anti-amylase and anti-glycation potential of brans of some Sri Lankan traditional and improved rice (Oryza sativa L.) varieties	J. Cereal Sci.	58	451-456	2013		
38711	0	Kijoji A.A.a b, Nchimbi-Msolla S.a, Kanyeka Z.L.c, Klassen S.P.b, Serraj R.b d, Henry A.b	Water extraction and root traits in Oryza sativaOryza glaberrima introgression lines under different soil moisture regimes	Functional Plant Biology	40	54-66	2013		
38712	0	Naher U.A.a, Othman R.a b, Panhwar Q.A.b	Beneficial Effects of Mycorrhizal Association for Crop Production in the Tropics - A Review	Int J Agric Biol	15	1021-1028	2013		
38713	0	Pongprayoon W.a d, Roytrakul S.b, Pichayangkura R.c, Chadchawan S.a	The role of hydrogen peroxide in chitosan-induced resistance to osmotic stress in rice (Oryza sativa L.)	Plant Growth Regul.	70	159-173	2013		
38714	0	Santos K.F.D.N.a, Silveira R.D.D.a, Martin-Didonet C.C.G.b, Brondani C.c	Storage protein profile and amino acid content in wild rice oryza glumaepatula	Pesqui. Agropecu. Bras.	48	66-72	2013		
38715	0	Kasetsomboon T.a b, Kate-Ngam S.c, Sriwongchai T.a d, Zhou B.e, Jantasuriyarat C.a b f	Sequence variation of avirulence gene AVR-Pita1 in rice blast fungus, Magnaporthe oryzae	Mycol. Prog.	12	617-628	2013		
38716	23824459	Chernov V.M., Chernova O.A., Gorshkov O.V., Baranova N.B., Mouzykantov A.A., Nesterova T.N., Ponomareva A.A.	Interaction between mycoplasmas and plants: Extracellular membrane vesicles and phytopathogenicity of Acholeplasma laidlawii PG8	Doklady Biochemistry and Biophysics	450	155-159	2013		
38717	0	Casella L.a, Greco R.b, Bruschi G.a, Wozniak B.b, Dreni L.c, Kater M.c, Cavigiolo S.a, Lupotto E.a, Piffanelli P.b	TILLING in European rice: Hunting mutations for crop improvement	Crop Sci.	53	2550-2562	2013		
38718	23940254	Werner A.K.a, Medina-Escobar N.a, Zulawski M.a, Sparkes I.A.b c, Cao F.Q.a, Witte C.P.a	The ureide-degrading reactions of purine ring catabolism employ three amidohydrolases and one aminohydrolase in arabidopsis, soybean, and rice	Plant Physiol.	163	672-681	2013	UAH,PHS39,UGlyAH,ALN	OsUAH,OsAAH, AAH, OsPHS39,OsUGlyAH,OsALN
38719	0	Six L., Smolders E., Merckx R.	The performance of DGT versus conventional soil phosphorus tests in tropical soils-maize and rice responses to P application	Plant Soil	366	49-66	2013		
38720	0	Cerqueira F.B.a, Erasmo E.A.L.b, Silva J.I.C.c, Nunes T.V.d, Carvalho G.P.e, Silva A.A.f	Competition between drought-tolerant upland rice cultivars and weeds under water stress condition [Competi??o entre cultivares de arroz de terras altas tolerantes ? seca e plantas daninhas sob condi??o de estresse h?drico]	Planta Daninha	31	291-302	2013		
38721	0	Rodr?guez M.a, Gonz?lez M.C.b, Cristo E.b, Oliva O.a, Pujol M.a, Borr?s-Hidalgo O.a	Identification of genes with altered expression levels in contrasting rice cultivars exposed to salt stress treatments	Biotecnologia Aplicada	30	178-181	2013		
38722	0	Ahsan S.a, Hussain Z.b, Raza Naqvi S.A.c, Rafique Asi M.d	Effect of gamma radiation on aflatoxin load, amino acid and fatty acid composition of Oryza sativa L	Pak J Bot	45	1577-1580	2013		
38723	0	Vega A., Franco H.	Productivity and quality of the fruiting bodies of edible mushrooms Pleurotus pulmonarius RN2 and P. Djamor RN81 and RN82 grown on different lignocellulosic substrates [Productividad y calidad de los cuerpos fruct?feros de los hongos comestibles Pleurotus pulmonarius RN2 y P. Djamor RN81 y RN82 cultivados sobre sustratos lignocelul?sicos]	Informacion Tecnologica	24	69-78	2013		
38724	0	Kam H.a, Laing M.D.a, S?r? Y.b, Thi?m?l? D.c, Ghesqui?re A.c, Ahmadi N.d, Ndjiondjop M.N.b	Evaluation of a collection of rice landraces from Burkina Faso for resistance or tolerance to rice yellow mottle virus	Journal of Plant Pathology	95	485-492	2013		
38725	0	Wankhade S.D.a b, Cornejo M.J.a, Mateu-Andr?s I.b, Sanz A.a	Morpho-physiological variations in response to NaCl stress during vegetative and reproductive development of rice	Acta Physiologiae Plantarum	35	323-333	2013		
38726	0	Shafiee M.I.a, Boyce A.N.a, Khandaker M.M.a, Saad J.M.b, Aziz T.A.a, Mispan M.S.a, Anuar M.S.M.a, Bakar B.H.a	Pilot studies on rice yield enhancement with foliar application of SBAJA in Sungai Besar, Selangor, Malaysia	Life Science Journal	10	329-335	2013		
38727	23710454	Faseleh Jahromi M.a, Liang J.B.a, Ho Y.W.b, Mohamad R.c d, Goh Y.M.e, Shokryazdan P.b, Chin J.f	Lovastatin in Aspergillus terreus: Fermented rice straw extracts interferes with methane production and gene expression in Methanobrevibacter smithii	Biomed Res Int	2013		2013		
38728	24498832	Weerakoon S.R., Somaratne S., Wijeratne R.G.D., Ekanyaka E.M.S.I.	Natural Herbicide Resistance (HR) to broad-spectrum herbicide, glyphosate among traditional and inbred-cultivated rice (Oryza sativa L.) varieties in Sri Lanka	Pakistan Journal of Biological Sciences	16	796-803	2013		
38729	0	Aumonde T.Z.a d, Ped? T.a d, Borella Juniorb c, Amarante L.b c, Villela F.A.a d	Seed vigor, antioxidant metabolism and initial growth characteristics of red rice seedlings under different light intensities	Acta Botanica Brasilica	27	311-317	2013		
38730	0	Tavares L.C.a, Brunes A.P.a, Da Fonseca D.A.R.a, Gadotti G.I.b, De Tunes L.M.a, Meneghello G.E.a, Barros A.C.S.A.a	Effect of acetic acid on rice seeds coated with rice husk ash	Revista Ceres	60	437-441	2013		
38731	0	Habib N.a, Ashraf M.b c, Shahbaz M.a	Effect of exogenously applied nitric oxide on some key physiological attributes of rice (Oryza sativa L.) plants under salt stress	Pak J Bot	45	1563-1569	2013		
38732	0	Chougourou D.C.a, Togola A.b, Nwilene F.E.c, Adeliossi J.a, Bachabi F.b, Oyetunji O.E.c	Susceptibility of some rice varieties to the lesser grain borer, Rhyzopertha dominica fab. (Coleoptera: Bostrichidae) in Benin	Journal of Applied Sciences	13	173-177	2013		
38733	0	Akram H.M.a, Ali A.a, Sattar A.a, Rehman H.S.U.a, Bibi A.b	Impact of water deficit stress on various physiological and agronomic traits of three Basmati rice (Oryza sativa L.) cultivars	Journal of Animal and Plant Sciences	23	1415-1423	2013		
38734	0	de Souza R.a, Beneduzi A.b, Ambrosini A.a, da Costa P.B.a, Meyer J.a, Vargas L.K.b, Schoenfeld R.c, Passaglia L.M.P.a	The effect of plant growth-promoting rhizobacteria on the growth of rice (Oryza sativa L.) cropped in southern Brazilian fields	Plant Soil	366	585-603	2013		
38735	23564956	Ortiz-Morea F.A.a b, Vicentini R.c, Silva G.F.F.a b, Silva E.M.b, Carrer H.a, Rodrigues A.P.b, Nogueira F.T.S.a b	Global analysis of the sugarcane microtranscriptome reveals a unique composition of small RNAs associated with axillary bud outgrowth	J. Exp. Bot.	64	2307-2320	2013		
38736	0	Estrada G.A.a, Baldani V.L.D.b, de Oliveira D.M.c, Urquiaga S.b, Baldani J.I.b	Selection of phosphate-solubilizing diazotrophic Herbaspirillum and Burkholderia strains and their effect on rice crop yield and nutrient uptake	Plant Soil	369	115-129	2013		
38737	0	Akter S.a b, Latif M.A.a d, Mia A.T.a, Ansari T.H.a, Islam M.T.c, Rafii M.Y.d e	Efficacy of fungicides against grain spot disease in rice (Oryza sativa)	Life Science Journal	10	3005-3008	2013		
38738	0	Hakim M.A.a b, Juraimi A.S.c, Razi Ismail M.a c, Hanafi M.M.d, Selamat A.c	A survey on weed diversity in coastal rice fields of Sebarang Perak in Peninsular Malaysia	Journal of Animal and Plant Sciences	23	534-542	2013		
38739	0	Moro E.a, Crusciol C.A.C.b c, Cantarella H.c d, Nascente A.S.e, Moro A.L.a, Broetto F.f	Soil acidity as affecting micronutrients concentration, nitrato reductase enzyme activity and yield in upland rice plants [Acidez do solo afetando concentra??o de micronutrientes, atividade da enzima nitrato redutase e produtividade em plantas de arroz de terras altas]	Semina:Ciencias Agrarias	34	3397-3410	2013		
38740	0	Postrigan' B.N., Knyazev A.V., Kuluev B.R., Chemeris A.V.	Effect of cadmium on promoter activity of rice phytochelatin synthase gene in transgenic tobacco plants	Russian Journal of Plant Physiology	60	701-705	2013		
38741	24349120	Chawade A.a, Lindl?f A.a b, Olsson B.b, Olsson O.a c	Global expression profiling of low temperature induced genes in the chilling tolerant japonica rice Jumli Marshi	PLoS ONE	8		2013		
38742	0	Saleethong P.a, Sanitchon J.b, Kong-ngern K.a, Theerakulpisut P.a	Effects of exogenous spermidine (Spd) on yield, yield-related parameters and mineral composition of rice (Oryza sativa L. ssp. indica) grains under salt stress	Aust J Crop Sci	7	1293-1301	2013		
38743	0	Moratiel R.a b, Mart?nez-Cob A.c	Evapotranspiration and crop coefficients of rice (Oryza sativa L.) under sprinkler irrigation in a semiarid climate determined by the surface renewal method	Irrigation Science	31	411-422	2013		
38744	23918431	Mieulet D., Di?vart A., Droc G., Lanau N., Guiderdoni E.	Reverse genetics in rice using Tos17	Methods in Molecular Biology	1057	205-221	2013		
38745	0	Quazi S.A.J.a, Meon S.b, Jaafar H.c, Ahmad Z.A.B.M.b	Characterization of Fusarium proliferatum through species specific primers and its virulence on rice seeds	Int J Agric Biol	15	649-656	2013		
38746	0	Van Buyten E.a, Banaay C.G.B.b c, Vera Cruz C.b, H?fte M.a	Identity and variability of Pythium species associated with yield decline in aerobic rice cultivation in the Philippines	Plant Pathol.	62	139-153	2013		
38747	0	Maksup S.a, Supaibulwatana K.a, Selvaraj G.b	High-quality reference genes for quantifying the transcriptional responses of Oryza sativa L. (ssp. indica and japonica) to abiotic stress conditions	Chinese Science Bulletin	58	1919-1930	2013	_,_,_	HNR27C, HNR,TBC22A, TBC,EP
38748	0	Cheah T.W.a, Ismail I.a b, Sidek N.M.a, Wagiran A.c, Abdullah R.d	Biosynthesis of very long polyunsaturated Omega-3 and Omega-6 fatty acids in transgenic Japonica rice (Oryza sativa L)	Aust J Crop Sci	7	1227-1234	2013		
38749	0	Mabesa R.L.a, Impa S.M.a, Grewal D.b, Johnson-Beebout S.E.a	Contrasting grain-Zn response of biofortification rice (Oryza sativa L.) breeding lines to foliar Zn application	Field Crops Res.	149	223-233	2013		
38750	22869288	Jackson M.A., Anderson D.J., Birch R.G.	Comparison of Agrobacterium and particle bombardment using whole plasmid or minimal cassette for production of high-expressing, low-copy transgenic plants	Transgenic Res.	22	143-151	2013		
38751	0	Boonrueng N., Anuntalabhochai S., Jampeetong A.	Morphological and anatomical assessment of KDML 105 (Oryza sativa L. spp. indica) and its mutants induced by low-energy ion beam	Rice Science	20	213-219	2013		
38752	0	Clerget B.a b, Bueno C.b	The effect of aerobic soil conditions, soil volume and sowing date on the development of four tropical rice varieties grown in the greenhouse	Functional Plant Biology	40	79-88	2013		
38753	0	Lu H.a b, Shi Z.Y.a	Molecular research progress of rice panicle development	Zhiwu Shengli Xuebao/Plant Physiology Journal	49	111-121	2013		
38755	0	Valarmathi P.a b, Rabindran R.a b, Velazhahan R.a b, Suresh S.a b, Robin S.a b	First report of Rice orange leaf disease phytoplasma (16 SrI) in rice (Oryza sativa) in India	Australas. Plant Dis. Notes	8	141-143	2013		
38756	0	Singh V.K., Kumar V.	Delineation of sulphur deficiencies in Trans-Gangetic Plain and on-farm sulphur management for higher productivity and profits in rice (Oryza sativa)-wheat (Triticum aestivum) system	Indian Journal of Agricultural Sciences	83	1340-1346	2013		
38757	0	Devi G.L., Koradi P., Shenoy V., Shanti M.L.	Marker-assisted selection: Evaluation of bacterial blight resistance in the pyramids of fertility restorer lines	Journal of Plant Pathology	95	299-311	2013		
38758	24506038	Bekele B.D.a b, Naveen G.K.a c, Rakhi S.a c, Shashidhar H.E.a	Genetic evaluation of recombinant inbred lines of rice (Oryza sativa L.) for grain zinc concentrations, yield related traits and identification of associated SSR markers	Pakistan Journal of Biological Sciences	16	1714-1721	2013		
38759	0	Kiran T.V., Rao Y.V., Subrahmanyam D., Rani N.S., Bhadana V.P., Rao P.R., Voleti S.R.	Variation in leaf photosynthetic characteristics in wild rice species	Photosynthetica	51	350-358	2013		
38760	0	de Waele D.a b c, Das K.b d, Zhao D.b, Tiwari R.K.S.e, Shrivastava D.K.d, Vera-Cruz C.b, Kumar A.b	Host response of rice genotypes to the rice root-knot nematode (Meloidogyne graminicola) under aerobic soil conditions	Archives of Phytopathology and Plant Protection	46	670-681	2013		
38761	0	Elanchezhian R.a, Kumar S.b, Singh S.S.b, Dwivedi S.K.b, Shivani S.b, Bhatt B.P.b	Plant survival, growth and yield attributing traits of rice (Oryza sativa L.) genotypes under submergence stress in rainfed lowland ecosystem	Indian Journal of Plant Physiology	18	326-332	2013		
38762	0	Patil A.S.P., Nanjappa H.V., Ramachandrappa B.K.	Root and tillering behaviour study of aerobic rice (Oryza sativa L.) genotypes for targeted yield under site specific nutrient management (SSNM) approach	Research on Crops	14	654-660	2013		
38763	0	Singh D.a, Bhaskar B.P.a b, Baruah U.a c, Sarkar D.a b, Vadivelu S.a	Economic appraisal of rice (Oryza sativa) based cropping sequences in major soil series of upper Asom	Indian Journal of Agricultural Sciences	83	326-330	2013		
38764	0	Das T.a, Shukla Y.M.a, Poonia T.C.a b, Meena M.a, Meena M.D.a c	Effects of brassinolide on physiological characteristics of rice (Oryza sativa L.) with different salinity levels	Ann Biol	29	228-231	2013		
38765	0	Chawla S., Jain S., Jain V.	Salinity induced oxidative stress and antioxidant system in salt-tolerant and salt-sensitive cultivars of rice (Oryza sativa L.)	J. Plant Biochem. Biotechnol.	22	27-34	2013		
38766	23054487	Mohanlal S.a, Maney S.K.b, Santhoshkumar T.R.b, Jayalekshmy A.a	Tricin 4-O-(erythro-beta-guaiacylglyceryl) ether and tricin 4-O-(threo-beta-guaiacylglyceryl) ether isolated from Njavara (Oryza sativa L. var. Njavara), induce apoptosis in multiple tumor cells by mitochondrial pathway	J Nat Med	67	528-533	2013		
38767	0	Lore J.S.a, Hunjan M.S.a, Singh P.a, Willocquet L.b c, Sri S.d, Savary S.b c	Phenotyping of Partial Physiological Resistance to Rice Sheath Blight	Journal of Phytopathology	161	224-229	2013		
38768	0	Devi N.D.A.b, Pushpalatha K.C.a	Monitoring and biocontrol of paddy fungal pathogens collected from Hassan district	Journal of Biopesticides	6	6-13	2013		
38769	0	Biswas T.a, Das A.a, Bhattacharyya S.b	Marker assisted selection for developing high yielding submergence tolerant rice (Oryza sativa L.) genotypes with slender grain	Cereal Res. Commun.	41	35-44	2013		
38770	0	Roy B., Bhadra S.	Hematoxylin staining of seedling roots is a potential phenotypic index for screening of aluminium tolerance in rice (Oryza sativa L.)	Indian Journal of Genetics and Plant Breeding	73	194-198	2013		
38771	0	Kumar A.a, Gul M.Z.a, Zeeshan A.b, Bimolata W.a, Qureshi I.A.c, Ghazi I.A.a	Differential antioxidative responses of three different rice genotypes during bacterial blight infection	Aust J Crop Sci	7	1893-1900	2013		
38772	0	Padmavathi P.V.a, Satyanarayana P.V.b, Lal Ahamed M.a	Stability analysis of rice (Oryza sativa L.) hybrids utilizing regression and AMMI models	Vegetos	26	148-153	2013		
38773	0	Srinivasarao C.a, Venkateswarlu B.a, Lal R.b, Singh A.K.c, Kundu S.a	Sustainable management of soils of dryland ecosystems of india for enhancing agronomic productivity and sequestering carbon	Advances in Agronomy	121	253-329	2013		
38774	0	Alam M.M.a, Karim M.R.a, Ladha J.K.b	Integrating best management practices for rice with farmers' crop management techniques: A potential option for minimizing rice yield gap	Field Crops Res.	144	62-68	2013		
38775	0	Kamaraj B.a, Purohit R.a b	In-silico analysis of Betaine Aldehyde dehydrogenase2 of Oryza sativa and significant mutations responsible for fragrance	J Plant Interact	8	321-333	2013		
38776	0	Shakir Y.a b, Mannan A.a c, Shakeel S.a c	CP-HSP gene transcribe in rice (Oryza sativa) under heavy metal stress	Indian Journal of Agricultural Sciences	83	386-390	2013		
38777	0	Banumathy S.a b, Thiyagarajan K.a, Manonmani S.a	Evaluation of rice genotypes for fertility restoration against WA and O. perennis cytoplasm based cytoplasmic male sterility	Indian Journal of Genetics and Plant Breeding	73	199-202	2013		
38778	0	Sood N.a, Sohal B.S.a, Lore J.S.b	Foliar application of benzothiadiazole and salicylic acid to combat sheath blight disease of rice	Rice Science	20	349-355	2013		
38779	0	Punithavalli M.a, Muthukrishnan N.M.b, Rajkumar M.Bc	Influence of Rice Genotypes on Folding and Spinning Behaviour of Leaffolder (Cnaphalocrocis medinalis) and Its Interaction with Leaf Damage	Rice Science	20	422-450	2013		
38780	0	Yadav S.K.a b, Singh Y.a c, Yadav M.K.a d, Babu S.a e, Singh K.a	Effect of organic nitrogen sources on yield, nutrient uptake and soil health under rice (Oryza sativa) based cropping sequence	Indian Journal of Agricultural Sciences	83	170-175	2013		
38781	0	Hakeem K.R.a b, Mir B.A.c, Qureshi M.I.d, Ahmad A.a, Iqbal M.a	Physiological studies and proteomic analysis for differentially expressed proteins and their possible role in the root of N-efficient rice (Oryza sativa L.)	Molecular Breeding	32	785-798	2013		
38782	0	Yadav G.S.a, Datta M.a, Babu S.a b, Debnath C.a, Sarkar P.K.a	Growth and productivity of lowland rice (Oryza sativa) as influenced by substitution of nitrogen fertilizer by organic sources	Indian Journal of Agricultural Sciences	83	1038-1042	2013		
38783	0	Rathi S.a, Sarma R.N.a b, Yadav R.N.S.a	Variation in seed dormancy and alpha-amylase activity in Indian rice (Oryza sativa) accessions	Indian Journal of Agricultural Sciences	83	56-62	2013		
38784	0	Chandusingh P.R.b, Singh N.K.c, Prabhu K.V.a, Vinod K.K.a, Singh A.K.a	Molecular mapping of quantitative trait loci for grain chalkiness in rice (Oryza sativa L.)	Indian Journal of Genetics and Plant Breeding	73	244-251	2013		
38785	0	Dehury B.a b, Sarma K.a, Sarmah R.a, Sahu J.a, Sahoo S.a, Sahu M.a, Sen P.a, Modi M.K.a, Sharma G.D.b, Choudhury M.D.b, Barooah M.a	In silico analyses of superoxide dismutases (SODs) of rice (Oryza sativa L.)	J. Plant Biochem. Biotechnol.	22	150-156	2013		
38786	0	Thakur A.K., Rath S., Mandal K.G.	Differential responses of system of rice intensification (SRI) and conventional flooded-rice management methods to applications of nitrogen fertilizer	Plant Soil	370	59-71	2013		
38787	0	Masthana Reddy B.G.a, Ravishankara b, Balaganhvi S.a, Joshi V.R.a	Nutrient management of rice (Oryza sativa) under system of rice intensification (SRI)	Indian Journal of Agricultural Sciences	83	591-594	2013		
38788	0	Imam J.a b, Alam S.a, Variar M.a, Shukla P.b	Identification of rice blast resistance gene Pi9 from Indian rice land races with STS marker and its verification by virulence analysis	Proceedings of the National Academy of Sciences India Section B - Biological Sciences	83	499-504	2013		
38789	0	Kumar S., Mall A.K., Singh P.K., Verma O.P., Verma G.P., Kumar M.	Interrelationships for yield and component traits in rainfed upland rice (oryza sativa L.)	Plant Archives	13	287-290	2013		
38790	0	Roy S.C., Roy T.	Peptide mass fingerprinting of rice (Oryza sativa L.) leaves during UV-B induced stress at seedling stage: A proteom analysis	Indian J. Biotechnol.	12	504-508	2013		
38791	0	Mallikarjuna B.P.a, Shivakumar N.a, Hittalmani S.a, Prahalada G.D.a, Lohithaswa H.C.a b, Krishnappa M.R.a b	Validation of SSR markers linked to fertility restoration in rice (Oryza sativa L.)	Research on Crops	14	324-329	2013		
38792	0	Bhattacharjee S.a b	Heat and chilling induced disruption of redox homeostasis and its regulation by hydrogen peroxide in germinating rice seeds (Oryza sativa L., Cultivar Ratna)	Physiology and Molecular Biology of Plants	19	199-207	2013		
38793	0	Pyngrope S., Bhoomika K., Dubey R.S.	oxidative stress, protein carbonylation, proteolysis and antioxidative defense system as a model for depicting water deficit tolerance in Indica rice seedlings	Plant Growth Regul.	69	149-165	2013		
38794	0	Yadav S.K.a, Singh Y.b, Kumar R.P.c, Yadav M.K.c, Singh K.c	Effect of organic nitrogen sources on yield quality and nutrient uptake of rice (Oryza sativa) under different cropping system	Vegetos	26	58-66	2013		
38795	0	Patil P.a b, Nanjappa A.S.a c, Ramachandrappa H.V.a d, Hittalmani B.K.a e, Shailajaa, Basavaraj P.K.a f	Performance of aerobic rice (Oryza sativa L.) genotypes under site specific nutrient management (SSNM)	Research on Crops	14	350-356	2013		
38796	0	Punithavalli M.a, Muthukrishnan N.M.b, Rajkuma M.B.c	Defensive responses of rice genotypes for resistance against rice leaffolder cnaphalocrocis medinalis	Rice Science	20	363-370	2013		
38797	0	Mondal S., Bose B.	Improvement in regeneration potentiality by using magnesium nitrate primed seeds of rice in vitro	Vegetos	26	98-104	2013		
38798	0	Roy M.L.a b, Srivastava R.C.a	Effect of integrated use of chemical fertilizer and bioinoculents on growth, nitrate assimilation and yield of rice (Oryza sativa l.)	Indian Journal of Agricultural Research	48	419-424	2013		
38799	0	Mahalingam A.a, Saraswathi R.b, Ramalingam J.c, Jayaraj T.d	Genetics of floral traits in Cytoplasmic male sterile (CMS) and restorer lines of hybrid rice (Oryza sativa L.)	Pak J Bot	45	1897-1904	2013		
38800	24431506	Gayacharana, Joel A.J.b	Epigenetic responses to drought stress in rice (Oryza sativa L.)	Physiology and Molecular Biology of Plants	19	379-387	2013		
38801	0	Shah J.M., Singh R., Veluthambi K.	Transgenic rice lines constitutively co-expressing tlp-D34 and chi11 display enhancement of sheath blight resistance	Biol. Plant.	57	351-358	2013		
38802	0	Bhoomika K., Pyngrope S., Dubey R.S.	Differential responses of antioxidant enzymes to aluminum toxicity in two rice (Oryza sativa L.) cultivars with marked presence and elevated activity of Fe SOD and enhanced activities of Mn SOD and catalase in aluminum tolerant cultivar	Plant Growth Regul.	71	235-252	2013		
38803	23829075	Das A., Paul T., Halder S.K., Maity C., Mohapatra P.K.D., Pati B.R., Mondal K.C.	Study on regulation of growth and biosynthesis of cellulolytic enzymes from newly isolated aspergillus fumigatus ABK9	Polish Journal of Microbiology	62	31-43	2013		
38804	0	Shikari A.B.a, Khanna A.a, Krishnan S.G.a, Singh U.D.b, Rathour R.c, Tonapi V.d, Sharma T.R.e, Nagarajan M.f, Prabhu K.V.a, Singh A.K.a	Molecular analysis and phenotypic validation of blast resistance genes Pita and Pita2 in landraces of rice (Oryza sativa L.)	Indian Journal of Genetics and Plant Breeding	73	131-141	2013		
38805	0	Kumar S.a, Dwivedi S.K.a, Elanchezhian R.b, Singh S.S.a, Singh O.N.c, Arora A.d, Bhatt B.P.a	Influence of aerobic condition on physiological traits and yield attributes of rice (Oryza sativa L.) genotypes under rainfed lowland ecosystem	Indian Journal of Plant Physiology	18	263-269	2013		
38806	0	Ghosh S.C., Chandrakar P.K., Rastogi N.K.	Gene action and fertility restoration behavior of the tropical japonica/ indica, japonica/indica derived restorers in rice (Oryza sativa L.)	Indian Journal of Genetics and Plant Breeding	73	23-28	2013		
38807	0	Krishnan S.R., Priya A.M., Ramesh M.	Rapid regeneration and ploidy stability of 'cv IR36' indica rice (Oryza Sativa. L) confers efficient protocol for in vitro callus organogenesis and Agrobacterium tumefaciens mediated transformation	Botanical Studies	54		2013		
38809	0	Park S.J.a, Lee Y.H.a, Nam Y.J.a, Baik B.K.b, Kim T.W.a	Peptide-based biomarker discovery for identification of rice cultivars using surface enhanced laser desorption/ionization time-of-flight mass spectrometry	Crop Sci.	53	987-995	2013		
38810	0	Yun Y.B.a, Park J.I.a, Choi H.S.b, Jung H.I.c, Jang S.J.a, Back K.d, Kuk Y.I.a	Protoporphyrinogen oxidase-overexpressing transgenic rice is resistant to drought stress	Crop Sci.	53	1076-1085	2013		
38811	0	Balkunde S.a, Le H.L.b, Lee H.S.a, Kim D.M.a, Kang J.W.a, Ahn S.N.a	Fine mapping of a QTL for the number of spikelets per panicle by using near-isogenic lines derived from an interspecific cross between Oryza sativa and Oryza minuta	Plant Breeding	132	70-76	2013		
38812	23110463	Nguyen Le T.N.b, Byeon Y.a, Kim Y.S.a, Back K.a	Transient induction of melatonin biosynthesis in rice (Oryza sativa L.) during the reproductive stage Sangkyu Park1	J. Pineal Res.	55	40-45	2013	ASMT1,SL,ASA2,TSA	ZRP4, OMT, ASMT, OsASMT, OsASMT1, ASMT1, OsASMT13, OsCOMT19, COMT19,OsSL, sl (spl1), sl*, sl, spl1, CYP71P1, Os CYP71P1, T5H, OsT5H, CYP71A1, OsCYP71A1, OsLLM1, LLM1, LLM1/OsSL, ELL1, OsELL1, ELL1/SL, OsT5H1,OASA2 (=ASA2), OsASA2, OASA2, ASalpha2, OsASalpha2, OASA2,OsTSA, pOsTSA, TSbeta, TSA1, OsTSA1
38813	0	Hur Y.J.a, Jeung J.U.a, Kim S.Y.a, Park H.S.a, Cho J.H.a, Lee J.Y.a, Sohn Y.B.a, Song Y.C.a, Park D.S.a, Lee C.W.a, Sohn J.G.b, Nam M.H.a, Lee J.H.a	Functional markers for bacterial blight resistance gene Xa3 in rice	Molecular Breeding	31	981-985	2013		
38814	0	Park S.K.a, Kwak D.Y.a, Park D.S.a, Shin D.J.a, Hwang W.H.a, Kim M.H.a, Hur Y.J.a, Cho J.H.a, Song Y.C.a, Lee J.Y.a, Nam M.H.a, Choi I.R.b, Lee J.H.a	Fine mapping of Grh1, a major gene associated with antibiosis to green rice leafhopper in rice	Molecular Breeding	32	729-733	2013		
38815	0	Gutierrez J.a, Kim S.Y.a, Kim P.J.a b	Effect of rice cultivar on CH4 emissions and productivity in Korean paddy soil	Field Crops Res.	146	16-24	2013		
38816	0	Lee J.H.a, Shin K.S.a, Suh S.C.a, Rhim S.L.b, Lee Y.H.a, Lim M.H.a, Woo H.J.a, Qin Y.a, Cho H.S.a	cryIIIA toxin gene expression in transgenic rice confers resistance to rice water weevil	Plant Cell Tissue Organ Cult.	115	243-252	2013		
38817	24385365	Hwang I.S.a, Kang W.R.a, Hwang D.J.a, Bae S.C.a, Yun S.H.b, Ahn I.P.a	Evaluation of bakanae disease progression caused by Fusarium fujikuroi in Oryza sativa L.	Journal of Microbiology	51	858-865	2013		
38818	0	Monaco M.K.a, Sen T.Z.b c, Dharmawardhana P.D.d, Ren L.a, Schaeffer M.b e, Naithani S.f, Amarasinghe V.d, Thomason J.a, Harper L.b g, Gardiner J.c h, Cannon E.K.S.c, Lawrence C.J.b c, Ware D.a b, Jaiswal P.d	Maize metabolic network construction and transcriptome analysis	Plant Genome	6		2013		
38819	0	Hay F.R.a, de Guzman F.a, Ellis D.b, Makahiya H.c, Borromeo T.c, Hamilton N.R.S.a	Viability of Oryza sativa L. seeds stored under genebank conditions for up to 30 years	Genet. Resour. Crop Evol.	60	275-296	2013		
38820	0	Showler A.T.a, Cook S.C.b, Abrigo V.a	Transgenic Bt corn varietal resistance against the Mexican rice borer, Eoreuma loftini (Dyar) (Lepidoptera: Crambidae) and implications to sugarcane	Crop Protection	48	57-62	2013		
38821	0	Sha X.Y.a, Linscombe S.D.a, Groth D.E.a, Oard J.H.b, Harrell D.L.a, White L.M.a, Grimm C.C.c, Theunissen S.J.a, Henry B.J.a	Registration of 'Jazzman-2' aromatic long-grain rice	Journal of Plant Registrations	7	26-30	2013		
38822	0	Brye K.R., Rogers C.W., Smartt A.D., Norman R.J.	Soil texture effects on methane emissions from direct-seeded, delayed-flood rice production in Arkansas	Soil Sci	178	519-529	2013		
38823	0	Burow G.a, Franks C.a b, Xin Z.a, Burke J.a	Developmental and genetic characterization of a short leaf mutant of sorghum (Sorghum bicolor L. (Moench.))	Plant Growth Regul.	71	271-280	2013		
38824	23833164	Tatarinova T.a, Elhaik E.b, Pellegrini M.c	Cross-species analysis of genic GC3 content and DNA methylation patterns	Genome Biol Evol	5	1443-1456	2013		
38825	0	Lyman N., Nalley L.L.	Economic analysis of hybrid rice performance in Arkansas	Agron J	105	977-988	2013		
38826	0	Pinson S.R.M.a b, Jia Y.b, Gibbons J.W.c d	Three quantitative trait loci conferring resistance to kernel fissuring in rice identified by selective genotyping in two tropical Japonica populations	Crop Sci.	53	2434-2443	2013		
38827	0	Ortiz A.a, Blanco S.b, Arana G.c, L?pez L.d, Torres S.a, Quintana Y.a, P?rez P.a, Zambrano C.a, Fischer A.e	Current status in resistance of Ischaemum rugosum Salisb. to herbicide bispiribac-sodio in Venezuela [Estado actual de la resistencia de Ischaemum rugosum Salisb. al herbicida bispiribac-sodio en Venezuela]	Bioagro	25	79-89	2013		
38828	0	Aver'yanov A.A.a, Zakharenkova T.S.a, Lapikova V.P.a, Pasechnik T.D.a, Gaivoronskaya L.M.b, Baker C.J.c	Exogenous superoxide dismutase may lose its antidotal ability on rice leaves	Russian Journal of Plant Physiology	60	270-278	2013		
38829	0	Imai I.a, Kimball J.A.b, Conway B.c, Yeater K.M.d, McCouch S.R.a, McClung A.e	Validation of yield-enhancing quantitative trait loci from a low-yielding wild ancestor of rice	Molecular Breeding	32	101-120	2013		
38830	24280345	Dharmawardhana P.a, Ren L.b, Amarasinghe V.a, Monaco M.b, Thomason J.b, Ravenscroft D.c, McCouch S.c, Ware D.b, Jaiswal P.a	A genome scale metabolic network for rice and accompanying analysis of tryptophan, auxin and serotonin biosynthesis regulation under biotic stress	Rice (N Y)	6	15	2013		
38832	0	Eizenga G.C.a, Prasad B.b c, Jackson A.K.a, Jia M.H.a	Identification of rice sheath blight and blast quantitative trait loci in two different O. sativa/O. nivara advanced backcross populations	Molecular Breeding	31	889-907	2013		
38833	0	Xu S.a b, Zhu S.c, Jiang Y.a, Wang N.a, Wang R.b, Shen W.a, Yang J.d	Hydrogen-rich water alleviates salt stress in rice during seed germination	Plant Soil	370	47-57	2013		
38834	0	Li X.L., Xu J., Yu G.Q., Luo L.	A wound-induced small polypeptide gene family is upregulated in soybean nodules	Chinese Science Bulletin	58	1003-1009	2013		
38835	0	Lin J.Z.a, Yang Y.Z.b, Zhou B.a, Fu C.J.b, Du C.Q.a, Hu X.C.b, Tang D.Y.a, Zhao X.Y.a, Shi J.W.a, Zhu Y.H.a, Liu X.M.a	A new and effective somatic mutagenesis rice breeding method	Hunan Daxue Xuebao/Journal of Hunan University Natural Sciences	40	79-85	2013		
38836	0	Wei Z.a, Yun H.a, Fuqiang L.a, Zhiyong L.a b, Wanjun R.a, Wenyu Y.a	Effects of postponing nitrogen applications on leaf senescence of indica hybrid rice	Research on Crops	14	357-366	2013		
38837	0	Liu L.a, Chen T.a, Wang Z.a, Zhang H.a, Yang J.a, Zhang J.b	Combination of site-specific nitrogen management and alternate wetting and drying irrigation increases grain yield and nitrogen and water use efficiency in super rice	Field Crops Res.	154	226-235	2013		
38838	0	He J.a, Liu Y.a, Liu Y.a, Jiang L.a, Wu H.a, Kang H.a, Liu S.a, Chen L.a, Liu X.a, Cheng X.a, Wan J.a b	High-resolution mapping of brown planthopper (BPH) resistance gene Bph27(t) in rice (Oryza sativa L.)	Molecular Breeding	31	549-557	2013		
38839	0	Zeng Y.a, Ma L.a, Ji Z.a, Wen Z.a, Li X.a, Shi C.b, Yang C.a	Fine mapping and candidate gene analysis of lm3, a novel lesion mimic gene in rice	Biologia (Poland)	68	82-90	2013	LM3	UroD, URO-D, OsLM3, OsUroD, OsURO-D
38840	0	Wang J.a b, Zeng Q.a, Zhu J.a, Liu G.a, Tang H.a	Dissimilarity of ascorbate-glutathione (AsA-GSH) cycle mechanism in two rice (Oryza sativa L.) cultivars under experimental free-air ozone exposure	Agriculture, Ecosystems and Environment	165	39-49	2013		
38841	0	Mu P.a, Li Z.b	Correlation analysis and QTL mapping of osmotic potential in japonica rice under upland and lowland conditions	Canadian Journal of Plant Science	93	785-792	2013		
38842	0	Zhu L., Shi J., Zhao G., Zhang D., Liang W.	Post-meiotic deficient anther1 (PDA1) encodes an ABC transporter required for the development of anther cuticle and pollen exine in rice	Journal of Plant Biology	56	59-68	2013		
38843	0	Yang M., Sun F., Wang S., Qi W., Wang Q., Dong X., Yang J., Luo X.	Down-regulation of OsPDCD5, a homolog of the mammalian PDCD5, increases rice tolerance to salt stress	Molecular Breeding	31	333-346	2013		
38844	24376625	Zhang X.X.a, Tang Y.J.a, Ma Q.B.a, Yang C.Y.a, Mu Y.H.a, Suo H.C.a, Luo L.H.b, Nian H.a	OsDREB2A, a rice transcription factor, significantly affects salt tolerance in transgenic soybean	PLoS ONE	8		2013		
38845	0	Zhou S.a b c d, Zhu M.c d, Wang F.c d, Huang J.a b, Wang G.a b	Mapping of QTLs for yield and its components in a rice recombinant inbred line population	Pak J Bot	45	183-189	2013		
38846	0	Yang H.M., Xue Z.Y., Zhao L., Qi X.Q., Huang F.	Increased chlorophyll content and plant height of transgenic rice expressing sbtA of Synechocystis sp. PCC 6803	Zhiwu Shengli Xuebao/Plant Physiology Journal	49	351-356	2013		
38847	0	Liu L.a b, Wang E.b, Zhu Y.a, Tang L.a, Cao W.a	Quantifying three-decade changes of single rice cultivars in China using crop modeling	Field Crops Res.	149	84-94	2013		
38848	0	Zhang Z.a, Chu G.a, Liu L.a, Wang Z.a, Wang X.a, Zhang H.a, Yang J.a, Zhang J.b	Mid-season nitrogen application strategies for rice varieties differing in panicle size	Field Crops Res.	150	9-18	2013		
38849	0	Ma X.a, Cheng Z.a, Wu F.a, Jin M.a, Zhang L.b, Zhou F.b, Wang J.a, Zhou K.b, Ma J.a, Lin Q.a, Lei C.a, Wan J.a b	BEAK LIKE SPIKELET1 is Required for Lateral Development of Lemma and Palea in Rice	Plant Molecular Biology Reporter	31	98-108	2013	G1L2,G1L4,G1L3,BLS1,G1L9,G1L7,G1L8,G1L1,G1,G1L5	OsG1L2,OsG1L4,OsG1L3,OsBLS1, OsG1L6, G1L6, TH1, OsTH1, TH1/BSG1/BLS1/AFD1, BSG1, OsBSG1, AFD1, OsAFD1, BH1, OsBH1,OsG1L9,OsG1L7,OsG1L8,OsG1L1,g1 (lng), lng, g1, ELE, Os ELE, OsG1, G1/ELE, LSL2, OsLSL2,OsG1L5, TAW1, OsTAW1
38850	0	Tang W.a b, Page M.b	Overexpression of the Arabidopsis AtEm6 gene enhances salt tolerance in transgenic rice cell lines	Plant Cell Tissue Organ Cult.	114	339-350	2013		
38851	0	Feng B.H.a, Yang Y.a b, Shi Y.F.a, Lin L.c, Chen J.a, Wei Y.L.a b, Leung H.d, Wu J.L.a	Genetic Analysis and Gene Mapping of Light Brown Spotted Leaf Mutant in Rice	Rice Science	20	13-18	2013		
38852	0	Chen S.J., Liu Q.Q.	T-DNA tagging of the OsGUN4 gene resulted in the yellow-green leaf mutation in rice (oryza sativa L.)	Zhiwu Shengli Xuebao/Plant Physiology Journal	49	778-786	2013		
38853	0	Sheng Z.a b, Wei X.a, Shao G.a, Chen M.a, Song J.a, Tang S.a, Luo J.a, Hu Y.b, Hu P.a, Chen L.b	Genetic analysis and fine mapping of tms9, a novel thermosensitive genic male-sterile gene in rice (Oryza sativa L.)	Plant Breeding	132	159-164	2013		
38854	0	Zhu Q.C., Wei C.Z., Li M.N., Zhu J.L., Wang J.	Nutrient availability in the rhizosphere of rice grown with plastic film mulch and drip irrigation	Journal of Soil Science and Plant Nutrition	13	943-953	2013		
38855	0	Chen F.a, Jiang L.a, Zheng J.a, Huang R.a b, Wang H.a, Hong Z.b, Huang Y.a	Identification of a co-segregative protein associated with the tillering trait in rice (Oryza sativa L.)	Plant OMICS	6	36-45	2013		
38856	23661451	Zhang C.Y.a b, Wang N.N.c, Zhang Y.H.a, Feng Q.Z.a, Yang C.W.a, Liu B.a	DNA methylation involved in proline accumulation in response to osmotic stress in rice (Oryza sativa)	Genetics and Molecular Research	12	1269-1277	2013	P5CS,P5CR,OAT	OsP5CS, P5CS1, OsP5CS1, OsALDH18B1, ALDH18B1, OsP5CS-1, P5CS-1,OsP5CR,OsOAT, delta-OAT
38857	0	Feng G.N.a b, Zhang C.Q.a, Zhao D.S.a, Zhu K.Z.a, Tu H.Z.a, Xu C.W.a, Liu Q.Q.a	Fine mapping and cloning of leafy head mutant gene pla1-5 in rice	Rice Science	20	329-335	2013		
38858	0	Wang N.a b c, Li Y.F.a b c, Sang X.C.a b c, Ling Y.H.a b c, Zhao F.M.a b c, Yang Z.L.a b c, He G.H.a b c	Nonstop glumes (NSG), a novel mutant affects spikelet development in rice	Genes and Genomics	35	149-157	2013		
38859	0	Wang Y.a b, Zang J.a c, Sun Y.a, Ali J.d, Xu J.a, Li Z.a	Background-independent quantitative trait loci for drought tolerance identified using advanced backcross introgression lines in rice	Crop Sci.	53	430-441	2013		
38860	0	Xiong J., Ding C.Q., Wei G.B., Ding Y.F., Wang S.H.	Characteristic of dry-matter accumulation and nitrogen-uptake of super-high-yielding early rice in China	Agron J	105	1142-1150	2013		
38861	0	Xu P.a c, Yan W.c, He J.a, Li Y.b, Zhang H.a, Peng H.a, Wu X.a	DNA methylation affected by male sterile cytoplasm in rice (Oryza sativa L.)	Molecular Breeding	31	719-727	2013		
38862	0	Liu W.a, Ji S.b, Fang X.a c, Wang Q.a, Li Z.a, Yao F.a, Hou L.a, Dai S.b	Protein Kinase LTRPK1 Influences Cold Adaptation and Microtubule Stability in Rice	J. Plant Growth Regul.	32	483-490	2013	HBD2	OsCKI1, CKI, hbd2, CKI1, LTG1, OsCKI1/LTRPK1, LTRPK1, OsLTRPK1, LSES1, OsLSES1
38863	0	Wang Y.P.a, Wu Y.H.b, Liu P.a, Zheng G.H.a, Zhang J.Pa, Xu G.D.a	Effects of potassium on organic acid metabolism of Fe-sensitive and Fe-resistant rices (Oryza sativa L.)	Aust J Crop Sci	7	843-848	2013		
38864	0	Chen W.a b, Wang Y.a, Zhao Z.a, Cui F.b, Gu J.b, Zheng X.b	The effect of planting density on carbon dioxide, methane and nitrous oxide emissions from a cold paddy field in the Sanjiang Plain, northeast China	Agriculture, Ecosystems and Environment	178	64-70	2013		
38865	0	Lu H.a b, Shi Z.Y.a	Research progress on the molecular function of plant-specific LBD gene	Zhiwu Shengli Xuebao/Plant Physiology Journal	49	833-846	2013		
38866	0	Chen Y.a b d, Zhang Y.a b d, Yao J.c, Li Y.F.c, Yang X.a b d, Wang W.X.a b d, Zhang A.F.a b d, Gao T.C.a b d	Frequency distribution of sensitivity of Ustilaginoidea virens to four EBI fungicides, prochloraz, difenoconazole, propiconazole and tebuconazole, and their efficacy in controlling rice false smut in Anhui Province of China	Phytoparasitica	41	277-284	2013		
38867	0	Shahid M.Q., Chen F.Y., Li H.Y., Wang S.Z., Chen P.F., Lin S.Q., Liu X.D., Lu Y.G.	Double-neutral genes, Sa-n and Sb-n, for pollen fertility in rice to overcome indica ~ Japonica hybrid sterility	Crop Sci.	53	164-176	2013		
38868	0	Wang X., Fang G., Li Y., Ding M., Gong H., Li Y.	Differential antioxidant responses to cold stress in cell suspension cultures of two subspecies of rice	Plant Cell Tissue Organ Cult.	113	353-361	2013		
38869	0	Wang X.M.a, Zhou J.a, Yang Y.a, Yu F.B.a b, Chen J.a b, Yu C.L.a, Wang F.a, Cheng Y.a, Yan C.Q.a, Chen J.P.a	Transcriptome Analysis of a Progeny of Somatic Hybrids of Cultivated Rice (Oryza sativa L.) and Wild Rice (Oryza meyeriana L.) With High Resistance to Bacterial Blight	Journal of Phytopathology	161	324-334	2013		
38870	0	Li X.T.a b c, Cheng H.T.a b, Wang N.d, Yu C.M.a b, Qu L.Y.a b, Cao P.a b, Hu N.a b, Liu T.a b, Lyu W.Y.a b	Critical factors for grain filling of erect panicle type Japonica rice cultivars	Agron J	105	1404-1410	2013		
38871	0	Sun C.M.a, Liu T.a, Guo D.D.a, Zhuang H.Y.a, Wang Y.L.a, Zhu J.G.b	Numerical simulation of root growth dynamics of CO2-enriched hybrid rice cultivar shanyou 63 under fully open-air field conditions	Journal of Integrative Agriculture	12	781-787	2013		
38872	0	Shahid M.Q.a, Li Y.J.a, Saleem M.F.b, Naeem M.a c, Wei C.M.a, Liu X.D.a	Yield and yield components in autotetraploid and diploid rice genotypes (indica and japonica) sown in early and late seasons	Aust J Crop Sci	7	632-641	2013		
38873	0	Huang F.a, Fu X.a, Efisue A.b, Zhang S.c, Xie G.a, He W.a, Nevame A.Y.M.a, Jin D.a	Genetically characterizing a new indica cytoplasmic male sterility with oryza glaberrima cytoplasm for its potential use in hybrid rice production	Crop Sci.	53	132-140	2013		
38874	0	Mei D.Y., Zhu Y.J., Yu Y.H., Fan Y.Y., Huang D.R., Zhuang J.Y.	Quantitative Trait Loci for Grain Chalkiness and Endosperm Transparency Detected in Three Recombinant Inbred Line Populations of Indica Rice	Journal of Integrative Agriculture	12	1-11	2013		
38875	0	Zhu Y., Wang Q., Hu J., Zhu L., Wang J., Zhu S., Guan Y.	High resolution melting curve analysis: An efficient method for fingerprinting of hybrid rice cultivars and their parental lines	Aust J Crop Sci	7	2048-2053	2013		
38877	0	Hassan W.a, Chen W.a, Huang Q.a b, Mohamed I.b c	Microcalorimetric evaluation of soil microbiological properties under plant residues and dogmatic water gradients in Red soil	Soil Sci. Plant Nutr.	59	858-870	2013		
38878	0	Zhang H.a, Wang H.a, Qian Y.a b, Xia J.c, Li Z.c, Shi Y.a b, Zhu L.a, Ali J.d, Gao Y.a, Li Z.a	Simultaneous improvement and genetic dissection of grain yield and its related traits in a backbone parent of hybrid rice (Oryza sativa L.) using selective introgression	Molecular Breeding	31	181-194	2013		
38879	23697167	Sun H., Lang Z., Zhu L., Huang D.	Optimized condition for protoplast isolation from maize, wheat and rice leaves	Shengwu Gongcheng Xuebao/Chinese Journal of Biotechnology	29	224-234	2013		
38880	0	Luo K.a b, Zhu J.a, Liu G.a, Tang H.a, Li C.a b, Zeng Q.a	Responses of dry matter production and distribution in rice (Oryza sativa L.) to ozone and high nitrogen supply	Chinese Journal of Applied and Environmental Biology	19	286-292	2013		
38881	0	Tan Y.Y.a b, Fu H.W.c, Zhao H.J.a b, Lu S.a b, Fu J.J.b, Li Y.F.c, Cui H.R.a b, Shu Q.Y.a b	Functional molecular markers and high-resolution melting curve analysis of low phytic acid mutations for marker-assisted selection in rice	Molecular Breeding	31	517-528	2013		
38882	0	Rao Y.C.a, Yang Y.L.b, Xin D.D.a, Li X.J.a, Zhai K.E.a, Ma B.J.a, Pan J.W.a, Qian Q.b, Zeng D.L.b	Characterization and cloning of a brittle culm mutant (bc88) in rice (Oryza sativa L.)	Chinese Science Bulletin	58	3000-3006	2013	BC6	Bc6*, Bc6, OsCesA9, CESA9, OsCESA9, OS_CESA09, OsCesA 9, CesA9, BC88, SDBC1, OsSDBC1
38884	24301915	Li C.R.a b, Liang D.D.a b, Xu R.F.a b, Li H.b c, Zhang Y.P.b, Qin R.Y.b, Li L.a b, Wei P.C.b c, Yang J.B.b	Overexpression of an alternative oxidase gene, OsAOX1a, improves cold tolerance in Oryza sativa L	Genetics and Molecular Research	12	5424-5432	2013		
38885	0	Jiang S.K.a b, Wang J.Y.c, Jiang H.a, Luo Y.a, Sun S.C.a, Zhang X.J.a b, Bai L.M.a, Chen W.F.c, Zhang F.M.a, Xu Z.J.c	Dissection of QTLs for panicle structure traits in rice (Oryza sativa L. spp. japonica)	Zhiwu Shengli Xuebao/Plant Physiology Journal	49	1347-1354	2013		
38886	0	Zhang C.a b, Yin X.c, Gao K.c, Ge Y.b c, Cheng W.d	Non-protein thiols and glutathione S-transferase alleviate Cd stress and reduce root-to-shoot translocation of Cd in rice	Journal of Plant Nutrition and Soil Science	176	626-633	2013		
38887	0	Yu Q.a, Liu Z.a, Lin D.a, Zhang W.b, Sun Q.c, Zhu J.d, Lin M.b	Characterization and evaluation of Staphylococcus sp. strain LZ16 for the biological control of rice blast caused by Magnaporthe oryza	Biological Control	65	338-347	2013		
38888	0	Xue Y.a, Duan H.a, Liu L.a, Wang Z.a, Yang J.a, Zhang J.b	An improved crop management increases grain yield and nitrogen and water use efficiency in rice	Crop Sci.	53	271-284	2013		
38889	0	Liu Q.a, Wu X.a, Ma J.a, Li T.b, Zhou X.a, Guo T.a	Effects of high air temperature on rice grain quality and yield under field condition	Agron J	105	446-454	2013		
38890	23819293	Yu F.a c d, Liu K.b d d, Li M.a d c d, Zhou Z.a d c d, Deng H.a d c d, Chen B.a d c d	Effects of Cadmium on Enzymatic and Non-Enzymatic Antioxidative Defences of Rice (Oryza Sativa L.)	Int J Phytoremediation	15	513-521	2013		
38891	0	Yu G.H.a, Li W.a, Yuan Z.Y.a, Cui H.Y.a, Lv C.G.b, Gao Z.P.a, Han B.c, Gong Y.Z.d, Chen G.X.a	The effects of enhanced UV-B radiation on photosynthetic and biochemical activities in super-high-yield hybrid rice Liangyoupeijiu at the reproductive stage	Photosynthetica	51	33-44	2013		
38892	0	Li Y.a c, Ren B.a, Gao L.a, Ding L.a, Jiang D.b, Xu X.a, Shen Q.a, Guo S.a	Less Chlorophyll Does not Necessarily Restrain Light Capture Ability and Photosynthesis in a Chlorophyll-Deficient Rice Mutant	Journal of Agronomy and Crop Science	199	49-56	2013		
38893	0	Zhao D., Zhang C., Feng G., Yang Q., Gu M., Liu Q.	Hd-q, a novel allele of Ef7 from a Chinese rice landrace, confers weak photoperiod sensitivity and improves local adaptability and yield potential	Molecular Breeding	32	651-662	2013	HD3B	Hd17, EF7, Ef7, OsELF3-1, ELF3-1, OsELF3, ELF3, ELF3_chr.6, OsELF3.1, ELF3.1, OsELF3a, ELF3a
38894	23436553	Ding J., Mao L.J., Wang S.T., Yuan B.F., Feng Y.Q.	Determination of endogenous brassinosteroids in plant tissues using solid-phase extraction with double layered cartridge followed by high-performance liquid chromatography-tandem mass spectrometry	Phytochemical Analysis	24	386-394	2013		
38895	0	Chen Z.a c, Pan Y.H.b, An L.Y.a, Yang W.J.a, Xu L.G.a, Zhu C.a b	Heterologous expression of a halophilic archaeon manganese superoxide dismutase enhances salt tolerance in transgenic rice	Russian Journal of Plant Physiology	60	359-366	2013		
38896	0	Jin H., Chang Z.	The pollution way of microcystins and their bioaccumulation in terrestrial plants: A review	Shengtai Xuebao/ Acta Ecologica Sinica	33	3298-3310	2013		
38897	0	Li H.a b, Yang Y.b, Duan Y.b c, Li J.a b, Cong X.b, Ni D.a b, Song F.b c, Li L.b, Wei P.b, Yang J.b	Mapping QTLs for the tissue culture performance of rice mature embryo using indica-japonica recombinant inbred lines	Aust J Crop Sci	7	440-445	2013		
38898	0	Zeng Y.H.a b, Zhu Y.S.a b, Lian L.a b, Xie H.G.a b, Zhang J.F.a b, Xie H.A.a b	Genetic analysis and fine mapping of the pubescence gene GL6 in rice (Oryza sativa L.)	Chinese Science Bulletin	58	2992-2999	2013	_	GL6
38899	0	Song Y.a, Cui J.a, Zhang H.b, Wang G.a, Zhao F.J.c, Shen Z.a	Proteomic analysis of copper stress responses in the roots of two rice (Oryza sativa L.) varieties differing in Cu tolerance	Plant Soil	366	647-658	2013	RMC,GSK9,GH3-10,_,_,_,APX1,HSP82B,_,ASTOL1,TUBA1,SAT2;1,RBBI3-3,GSTL3,RSOSPR10,RF1,FKII,APX2,PDC2,APRL2,GSTU2,_,TUBA3,TID1,_,_,PP2C30,GLYI-11,_,C3H21,GRX28,_	OsRMC, OsRLK, OsDUF26, DUF26, OsCBMIP, CBMIP, NCS, OsNCS, OsCRK5, CRK5,OsSK31/OsGSK9, OsSK31, OsGSK9, SK31,OsGH3-10,PFP, OscPGM, cPGM,,POD2, OsPOD2, PRX13, OSPRX13,OsAPX1, APXa, OsAPXa, OsAPx01, OsAPx1, OSAPX1, APx1, cAPX, APX2, cAPXa, OscAPXa,OsHSP82, hsp82B, HSP82,OsECS, ECS, GSH2, OsGSH2,RCS1, rcs1, OsOASTL-A2, OASTL-A2, OsASTOL1,OsTubA1, TubA1, OS-TubA3, TubA3,OsSAT2;1,RBBI3-3, OsBBPI, BBPI, IBP1.2, OsIBP1.2, OsBBTI5, BBTI5,OsGSTL3,RSOsPR10, RsOsPR10a, OsPR10a, OsPR10alpha, OsPR10, PR10, OsBETV1, BETV1,Rf1 (Rf-1), rf-1, PPR791, PPR8-1, Rf-1, Rf1, Rf-1A, Rf5, Rf1a, RF5, Rf5(t)*(Rf(t)*), RF1A, PPR6, PLS31, OsPLS31,OsFKII, OsFK1, FK1, FRK-2, OsFRK-2, FRK2, OsFRK2,OsAPX2, OsAPx02, APXb, OsAPx2, OSAPX2, APx2, cAPX, OsAPX1, APX1,pdc2*, pdc2,OsAPRL2,OsGSTU2, ParC,OsSAMS3, OsSAMS1, SAMS3, SAMS1, SAM2, SAM1,OsTubA3, TubA3, OS-TubA1, TubA1,OsTID1, TubA2, SRS5, OS-TubA2, OsTubA2, OsSRS5, ,,,OsPP2C30, OsPP48, PP48,OsGLYI11, GLYI11, OsGLYII1.1, OsGLYI11.2, OsGLYI11.3, OsGLYI-11.2, Glb33,,OsC3H21,OsGRX28,
38900	0	Zhang Q.J.a, Li C.b, Liu S.K.b, Lai D.b, Qi Q.M.a, Lu C.G.a	Breeding and Identification of Insect-Resistant Rice by Transferring Two Insecticidal Genes, sbk and sck	Rice Science	20	19-24	2013		
38901	24391034	Guo X.L.a, Bai L.R.a, Su C.Q.a, Shi L.R.a, Wang D.W.b	Molecular cloning and expression of drought-induced protein 3 (DIP3) encoding a class III chitinase in upland rice	Genetics and Molecular Research	12	6860-6870	2013	_	DIP3, XIP, OsHI-XIP, OsXIP2, XIP2
38902	24301783	Zeng Y.X., Wen Z.H., Ma L.Y., Ji Z.J., Li X.M., Yang C.D.	Development of 1047 insertion-deletion markers for rice genetic studies and breeding	Genetics and Molecular Research	12	5226-5235	2013		
38903	0	Long Q.a, Zhang W.a, Wang P.a, Shen W.a, Zhou T.a, Liu N.a, Wang R.a, Jiang L.a, Huang J.a, Wang Y.a, Liu Y.a, Wan J.a b	Molecular genetic characterization of rice seed lipoxygenase 3 and assessment of its effects on seed longevity	Journal of Plant Biology	56	232-242	2013		
38904	24341590	Wang X.a b, Liu Q.a b, Wang H.b, Luo C.X.c, Wang G.a, Luo M.b	A BAC based physical map and genome survey of the rice false smut fungus Villosiclava virens	BMC Genomics	14	883	2013		
38905	0	Zhao X.H.a b, Qin Y.c, Jia B.Y.a, Kim S.M.d, Lee H.S.b, Eun M.Y.b, Kim K.M.b, Sohn J.K.b	Comparison and Analysis of QTLs, Epistatic Effects and QTL~Environment Interactions for Yield Traits Using DH and RILs Populations in Rice	Journal of Integrative Agriculture	12	198-208	2013		
38906	0	Wang L.F., Chen Y.Y.	Characterization of a wide leaf mutant of rice Oryza sativa L. With high yield potential in field	Pak J Bot	45	927-932	2013		
38907	23557631	He B.a b, Huang X.a, Li D.a, Jiang C.a, Yu T.a, Yin F.a, Li W.a b, Cheng Z.a	The cDNA cloning of a novel bacterial blight-resistance gene ME137	Acta Biochim. Biophys. Sin. (Shanghai)	45	422-424	2013	RCA	OsRcaII, rca, rcaII, OsRcaI, RCAI, ME137, OsRCA1, RCA, RCAalpha, OsRCAalpha, OsRCAbeta
38908	23659171	Feng H.a, Hou X.a, Li X.b, Sun K.a, Wang R.a, Zhang T.a, Ding Y.a	Cell death of rice roots under salt stress may be mediated by cyanide-resistant respiration	Zeitschrift fur Naturforschung - Section C Journal of Biosciences	68 C	39-46	2013		
38910	0	Wang Z.K.a, Huang Y.X.b, Miao Z.D.a, Hu Z.Y.a, Song X.Z.c, Liu L.a	Identification and characterization of BGL11(t), a novel gene regulating leaf-color mutation in rice (Oryza sativa L.)	Genes and Genomics	35	491-499	2013		
38911	0	Chen S., Zhang X., Zhao X., Wang D., Xu C., Ji C., Zhang X.	Response of rice nitrogen physiology to high nighttime temperature during vegetative stage	The Scientific World Journal	2013		2013		
38912	24280625	Pan S.a b, Rasul F.a c, Li W.a d, Tian H.a b, Mo Z.a b, Duan M.a b, Tang X.a b	Roles of plant growth regulators on yield, grain qualities and antioxidant enzyme activities in super hybrid rice (Oryza sativa L.)	Rice (N Y)	6	9	2013		
38913	0	Sun B.a c, Kong C.H.b, Wang P.a, Qu R.b	Response and relation of allantoin production in different rice cultivars to competing barnyardgrass	Plant Ecology	213	1917-1926	2013		
38914	0	Xu Y.Y.a b, Yan B.X.a, Zhu H.a	Leaf dew contributes nutrients to paddies and improves rice growth	Acta Agriculturae Scandinavica Section B: Soil and Plant Science	63	97-106	2013		
38915	0	Wang X., Hou C., Liu J., He W., Nan W., Gong H., Bi Y.	Hydrogen peroxide is involved in the regulation of rice (Oryza sativa L.) tolerance to salt stress	Acta Physiologiae Plantarum	35	891-900	2013		
38916	0	Xing J.a b, Jia Y.c, Correll J.C.d, Lee F.N.e, Cartwright R.d, Cao M.b, Yuan L.b	Analysis of genetic and molecular identity among field isolates of the rice blast fungus with an international differential system, rep-pcr, and dna sequencing	Plant Dis.	97	491-495	2013		
38917	0	Jiang Y.a, Huang S.a, Cai M.a, Li C.a, Kong X.a, Zhang F.a, Mohamed I.a b, Cao C.a	Yield changes of Bt-MH63 with cry1C* or cry2A* genes compared with MH63 (Oryza sativa) under different nitrogen levels	Field Crops Res.	151	101-106	2013		
38918	0	Liu H., Shen D., Jia S., Li W., Li J., Liu J., Han S., Wang Y.	Microarray-based screening of the microRNAs associated with caryopsis development in Oryza sativa	Biol. Plant.	57	255-261	2013		
38919	0	Feng G.N.a b, Zhang C.Q.a, Tang M.Y.a, Zhang G.Y.a, Xu C.W.a, Gu M.H.a, Liu Q.Q.a	Genetic analysis and gene cloning of a triangular hull 1 (tri1) mutant in rice (Oryza sativa L.)	Chinese Science Bulletin	58	2984-2991	2013	CFO1	OsMADS32, MADS32, OsCFO1, CFO1/OsMADS32, TRI1, OsTRI1 , OsMADS32/CFO, CFO, OsCFO
38920	0	Zhang G.a, Cui Y.a, Ding X.a b, Dai Q.b	Stimulation of phenolic metabolism by silicon contributes to rice resistance to sheath blight	Journal of Plant Nutrition and Soil Science	176	118-124	2013		
38921	24065663	Qiu Y.F., Cheng L., Liu F., Li R.B.	Identification of a new locus conferring antixenosis to the brown planthopper in rice cultivar Swarnalata (Oryza sativa L.)	Genetics and Molecular Research	12	3201-3211	2013		
38922	0	Sun L.a, Ma D.a, Yu H.b, Zhou F.b, Li Y.a, Luo L.c, Gao G.a, Zhang Q.a, Xu C.a, He Y.a	Identification of quantitative trait loci for grain size.and the contributions of major grain-size QTLs to grain weight in rice	Molecular Breeding	31	451-461	2013		
38923	0	Li J.W.a b c, Zhang J.X.a b, Zhao Z.a b, Lei X.D.a b, Xu X.L.a b, Lu X.X.a b, Weng D.L.d, Gao Y.e, Cao L.K.a b	Use of fluorescence-based sensors to determine the nitrogen status of paddy rice	Journal of Agricultural Science	151	862-871	2013		
38924	24386120	Chen Z.a, Li F.a, Yang S.b, Dong Y.a, Yuan Q.b, Wang F.c, Li W.a, Jiang Y.d, Jia S.a, Pei X.a	Identification and functional analysis of flowering related microRNAs in common wild rice (Oryza rufipogon Griff.)	PLoS ONE	8		2013		
38925	0	Liu L.a, Zhu Y.a, Tang L.a, Cao W.a, Wang E.b	Impacts of climate changes, soil nutrients, variety types and management practices on rice yield in East China: A case study in the Taihu region	Field Crops Res.	149	40-48	2013		
38926	0	Cheng L.a b, Xu Q.b, Zheng T.b, Ye G.c, Luo C.a, Xu J.b, Li Z.b	Identification of stably expressed quantitative trait loci for grain yield and protein content using recombinant inbred line and reciprocal introgression line populations in rice	Crop Sci.	53	1437-1446	2013		
38927	0	Lin Q.T., Liang W.H., Li H., Zhang J.	Expression characteristic of rice Rop gene OsRac5	Zhiwu Shengli Xuebao/Plant Physiology Journal	49	1400-1406	2013		
38928	0	Song R.a b, Zhao C.Y.a b, Liu J.a b, Zhang J.a b, Du Y.X.a b, Li J.Z.a b, Sun H.Z.a b, Zhao H.B.c, Zhao Q.Z.a b	Effect of sulphate nutrition on arsenic translocation and photosynthesis of rice seedlings	Acta Physiologiae Plantarum	35	3237-3243	2013		
38929	0	Hu B.a b c, Wan Y.a, Li X.a, Zhang F.b, Yan W.d, Xie J.b	Phenotypic characterization and genetic analysis of rice with pubescent leaves and glabrous hulls (PLgh)	Crop Sci.	53	1878-1886	2013		
38931	0	Cheng L.R.a b, Luo C.G.a, Xu J.L.a b	QTL detection of amino acid content in grains of rice using advanced backcross introgression lines	Research on Crops	14	317-323	2013		
38932	0	Tang W.a b, Page M.b	Inducible expression of Norwalk virus capsid protein gene in plant cell suspension cultures	In Vitro Cellular and Developmental Biology - Plant	49	129-136	2013		
38933	0	Wang J.a, Lin X.a, Sun Q.a, Jena K.K.b	Evaluation of cold tolerance for japonica rice varieties from different country	Advance Journal of Food Science and Technology	5	54-56	2013		
38934	0	Huang L.a b, Du Y.S.a b, Zheng X.M.a, Liu R.a b, Zhou H.F.a, Ge S.a b	Nucleotide diversity of 11S seed storage protein gene and its implications for ecological adaptation of Oryza nivara	J Syst Evol	51	641-651	2013		
38935	24338404	Dong Y.B.a, Li F.a, Pei X.W.a, Wang F.b, Yuan Q.H.c, Wu H.J.d, Jia S.R.a, Peng Y.F.d	Genome-wide multilocus analysis of intraspecific differentiation in Oryza rufipogon Griff. from China and the influence of introgression from O. sativa L	Genetics and Molecular Research	12	6103-6119	2013		
38936	0	Mahmood K.a b e, Khan M.B.a c, Song Y.Y.a b, Ijaz M.d, Luo S.M.a b, Zeng R.S.a b	UV-irradiation enhances rice allelopathic potential in rhizosphere soil	Plant Growth Regul.	71	21-29	2013		
38937	0	Li Z.a, Song Z.a b c d, Parr J.F.e, Wang H.a b	Occluded C in rice phytoliths: Implications to biogeochemical carbon sequestration	Plant Soil	370	615-623	2013		
38938	0	Wada T.a, Yasui H.b, Inoue T.a, Tsubone M.a, Ogata T.a, Doi K.b c, Yoshimura A.b, Matsue Y.a b	Validation of QTLs for eating quality of japonica rice 'Koshihikari' using backcross inbred lines	Plant Prod. Sci.	16	131-140	2013		
38939	23774898	Giraldo M.C.a, Dagdas Y.F.b, Gupta Y.K.b, Mentlak T.A.b d, Yi M.a, Martinez-Rocha A.L.b e, Saitoh H.b, Terauchi R.c, Talbot N.J.b, Valent B.a	Two distinct secretion systems facilitate tissue invasion by the rice blast fungus Magnaporthe oryzae	Nat Commun	4	1996	2013		
38940	0	Suzuki T.a, Ohta T.a, Izumi Y.b, Kanyomeka L.c, Mwandemele O.c, Sakagami J.I.d, Yamane K.e, Iijima M.e	Role of canopy coverage in water use efficiency of Lowland rice in early growth period in semi-arid region	Plant Prod. Sci.	16	12-23	2013		
38941	0	Fukuda M., Nagumo F., Nakamura S., Tobita S.	Ineffectiveness of directly applied Burkina Faso phosphate rock on rice growth	Soil Sci. Plant Nutr.	59	403-409	2013		
38942	24166434	Higuchi-Takeuchi M.a, Mori M.b, Matsui M.a	High-throughput analysis of rice genes by means of the heterologous Full-length cDNA OvereXpressor (FOX)-hunting system	International Journal of Developmental Biology	57	517-523	2013		
38943	0	Rahman S.M.a, Kakuda K.I.b, Sasaki Y.c, Makabe-Sasaki S.b, Ando H.b	Early growth stage water management effects on the fate of inorganic N, growth and yield in rice	Soil Sci. Plant Nutr.	59	921-932	2013		
38944	23683923	Ashikawa I., Abe F., Nakamura S.	DOG1-like genes in cereals: Investigation of their function by means of ectopic expression in Arabidopsis	Plant Science	208	1-9	2013		
38945	23830635	Ishikawa T.a, Uchimiya H.b, Kawai-Yamada M.b	The role of plant Bax inhibitor-1 in suppressing H2O 2-induced cell death	Meth. Enzymol.	527	239-256	2013		
38946	0	Nagumo T., Tajima S., Chikushi S., Yamashita A.	Phosphorus balance and soil phosphorus status in paddy rice fields with various fertilizer practices	Plant Prod. Sci.	16	69-76	2013		
38947	0	Makabe-Sasaki S., Kakuda K.I., Sasaki Y., Ando H.	Effect of slag silicate fertilizer on dissolved silicon in soil solution based on the chemical properties of Gleysols	Soil Sci. Plant Nutr.	59	271-277	2013		
38948	0	Pasuquin E.M.a b, Hasegawa T.c, Eberbach P.a, Reinke R.a d, Wade L.J.a, Lafarge T.b e	Responses of eighteen rice (Oryza sativa L.) cultivars to temperature tested using two types of growth chambers	Plant Prod. Sci.	16	217-225	2013		
38949	0	Yoshinaga S.a, Takai T.b, Arai-Sanoh Y.b, Ishimaru T.c, Kondo M.b	Varietal differences in sink production and grain-filling ability in recently developed high-yielding rice (Oryza sativa L.) varieties in Japan	Field Crops Res.	150	74-82	2013		
38950	0	Ohdaira Y.a, Sasaki R.b, Takeda H.c	Analysis of factors affecting seed protein compositions and protein contents in rice of seed-protein mutant cultivars under different cropping seasons	Japanese Journal of Crop Science	82	18-27	2013		
38951	0	Sakagami J.I., Joho Y., Sone C.	Complete submergence escape with shoot elongation ability by underwater photosynthesis in African rice, Oryza glaberrima Steud	Field Crops Res.	152	17-26	2013		
38952	0	Kawahara Y.a, de la Bastide M.b, Hamilton J.P.c, Kanamori H.a, McCombie W.R.b, Ouyang S.d, Schwartz D.C.e, Tanaka T.a, Wu J.a, Zhou S.e, Childs K.L.c, Davidson R.M.c f, Lin H.c g, Quesada-Ocampo L.c, Vaillancourt B.c, Sakai H.a, Lee S.S.a, Kim J.a, Numa H.a, Itoh T.a, Buell C.R.c, Matsumoto T.a	Improvement of the Oryza sativa Nipponbare reference genome using next generation sequence and optical map data	Rice (N Y)	6	4	2013		
38953	0	Okamura M.a, Hirose T.a b, Hashida Y.a, Yamagishi T.a, Ohsugi R.a, Aoki N.a	Starch reduction in rice stems due to a lack of OsAGPL1 or OsAPL3 decreases grain yield under low irradiance during ripening and modifies plant architecture	Functional Plant Biology	40	1137-1146	2013		
38954	0	Xu M.a, Li D.a, Li J.a, Qin D.a, Hosen Y.b, Shen H.a, Cong R.a, He X.a c d	Polyolefin-coated urea decreases ammonia volatilization in a double rice system of southern china	Agron J	105	277-284	2013		
38955	0	Ueda A.a, Yahagi H.a, Fujikawa Y.a, Nagaoka T.a, Esaka M.a, Calca?o M.b, Gonz?lez M.M.b, Hern?ndez Martich J.D.b, Saneoka H.a	Comparative physiological analysis of salinity tolerance in rice	Soil Sci. Plant Nutr.	59	896-903	2013		
38956	0	Matsushita K.a b c, Iida S.a, Ideta O.a, Ishii T.a, Fujimoto H.a, Watanabe H.b, Takahashi Y.b	Effect of low planting density on the spikelet number in 'Tachisuzuka', a rice (Oryza sativa L.) cultivar with a short panicle for whole crop silage use	Grassland Science	59	124-127	2013		
38957	0	Tawaraya K.a, Horie R.a, Saito A.a, Shinano T.b, Wagatsuma T.a, Saito K.c, Oikawa A.c	METABOLITE PROFILING OF SHOOT EXTRACTS, ROOT EXTRACTS, AND ROOT EXUDATES OF RICE PLANT UNDER PHOSPHORUS DEFICIENCY	J Plant Nutr	36	1138-1159	2013		
38958	0	Ma J.a, Ji Y.a c, Zhang G.a, Xu H.a, Yagi K.b	Timing of midseason aeration to reduce CH4 and N2O emissions from double rice cultivation in China	Soil Sci. Plant Nutr.	59	35-45	2013		
38959	0	Lu C.a, Liu J.a, Jiang J.H.a, Breria C.M.a, Tan H.L.a, Ichii M.b, Hong D.L.a	Development and application of SCAR markers for discriminating cytoplasmic male sterile lines from their cognate maintainer lines in indica rice	Rice Science	20	191-199	2013		
38960	0	Ujiie K., Ishimaru K.	Identification of chromosome regions affecting leaf area with rice chromosome segment substitution lines	Plant Prod. Sci.	16	31-36	2013		
38961	0	Kobayashi N.I.a, Iwata N.a, Saito T.a, Suzuki H.b, Iwata R.c, Tanoi K.a, Nakanishi T.M.a	Different magnesium uptake and transport activity along the rice root axis revealed by 28Mg tracer experiments*	Soil Sci. Plant Nutr.	59	149-155	2013		
38962	0	Koshiba T.a, Murakami S.a, Hattori T.a e, Mukai M.a, Takahashi A.b, Miyao A.b, Hirochika H.b, Suzuki S.a, Sakamoto M.c, Umezawa T.a d	CAD2 deficiency causes both brown midrib and gold hull and internode phenotypes in Oryza sativa L. cv. Nipponbare	Plant Biotechnology	30	365-373	2013		
38963	0	Ashida K.a, Araki E.a c, Maruyama-Funatsuki W.a, Fujimoto H.b, Ikegami M.b	Temperature during grain ripening affects the ratio of type-II/type-I protein body and starch pasting properties of rice (Oryza sativa L.)	J. Cereal Sci.	57	153-159	2013		
38965	0	Koumoto T.a, Shimada H.a b, Kusano H.a, She K.C.b, Iwamoto M.c, Takano M.c	Rice monoculm mutation moc2, which inhibits outgrowth of the second tillers, is ascribed to lack of a fructose-1,6-bisphosphatase	Plant Biotechnology	30	47-56	2013	PFPA2,MOC2,D17	OsPFPA2, OsPFP1a2, PFP1a2,FR, OsFR, FBP1, OsFBP1, OsMOC2, OscFBP1, cFBP1, MOC2/FBP1,d17(t), dwf14, d17, htd1, OsCCD7, CCD7, D17/HTD1, HTD1, OsHTD1, OsD17
38967	0	Koide Y.a b, Telebanco-Yanoria M.J.a b, Fukuta Y.a, Kobayashi N.a b c	Detection of novel blast resistance genes, Pi58(t) and Pi59(t), in a Myanmar rice landrace based on a standard differential system	Molecular Breeding	32	241-252	2013	PI59,PI58	Pi59(t),Pi58(t)
38968	0	Ishizaki T.a, Maruyama K.b, Obara M.b, Fukutani A.a, Yamaguchi-Shinozaki K.b c, Ito Y.b, Kumashiro T.b d	Expression of Arabidopsis DREB1C improves survival, growth, and yield of upland New Rice for Africa (NERICA) under drought	Molecular Breeding	31	255-264	2013		
38969	0	Kobayakawa H., Imai K.	Inclination angle affects ozone injury in the flag leaf of Rice	Plant Prod. Sci.	16	24-30	2013		
38970	0	Mizobuchi R.a, Sato H.b, Fukuoka S.a, Tanabata T.a c, Tsushima S.d, Imbe T.e, Yano M.f	Mapping a quantitative trait locus for resistance to bacterial grain rot in rice	Rice (N Y)	6	13	2013		
38971	0	Sasaki K.a b, Takahashi H.c d, Kojima S.e, Uchimiya H.c, Sato T.a	Metabolic alterations in free amino acid contents of rice (Oryza sativa l.) seeds during high-humidity storage	Research Journal of Seed Science	6	16-23	2013		
38972	0	Nguyen N.M.T.a b, Hoang L.H.a b, Furuya N.a c, Tsuchiya K.a c, Nguyen T.T.T.a b d	Quantitative trait loci (QTLs) associated with drought tolerance in vietnamese local rice (Oryza sativa L.)	Journal of the Faculty of Agriculture, Kyushu University	58	1-6	2013		
38973	24025801	Ueda M.a, Takami T.a b, Peng L.a d, Ishizaki K.c e, Kohchi T.c, Shikanai T.a, Nishimura Y.a	Subfunctionalization of sigma factors during the evolution of land plants based on mutant analysis of liverwort (Marchantia polymorpha L.) MpSIG1	Genome Biol Evol	5	1836-1848	2013		
38974	0	Matsushita A.a, Inoue H.a, Goto S.a, Nakayama A.a b, Sugano S.a, Hayashi N.a, Takatsuji H.a	Nuclear ubiquitin proteasome degradation affects WRKY45 function in the rice defense program	Plant Journal	73	302-313	2013		
38975	0	Hayano M., Fumoto T., Yagi K., Shirato Y.	National-scale estimation of methane emission from paddy fields in Japan: Database construction and upscaling using a process-based biogeochemistry model	Soil Sci. Plant Nutr.	59	812-823	2013		
38977	0	Mishima S.I.a, Kimura S.D.b, Eguchi S.a, Shirato Y.a	Changes in soil available-nutrient stores and relationships with nutrient balance and crop productivity in Japan	Soil Sci. Plant Nutr.	59	371-379	2013		
38978	24399907	Kubo T.a b	Genetic mechanisms of postzygotic reproductive isolation: An epistatic network in rice	Breed. Sci.	63	359-366	2013		
38979	0	Sudianto E.a, Beng-Kah S.a, Ting-Xiang N.b, Saldain N.E.c, Scott R.C.d, Burgos N.R.e	Clearfield? rice: Its development, success, and key challenges on a global perspective	Crop Protection	49	40-51	2013		
38980	0	Arai-Sanoh Y.a, Ida M.a b, Zhao R.a c, Nishitani K.d, Yoshinaga S.a e, Takai T.a, Nakano H.a, Iwasawa N.a, Kondo M.a	Varietal differences in cell wall beta-(13),(14)-glucan and nonstructural carbohydrate in rice stems during the grain filling stage	Plant Prod. Sci.	16	335-341	2013		
38981	0	Koide Y.a, Pariasca Tanaka J.b, Rose T.a, Fukuo A.a, Konisho K.a, Yanagihara S.a, Fukuta Y.a, Wissuwa M.a	Qtls for phosphorus deficiency tolerance detected in upland nerica varieties	Plant Breeding	132	259-265	2013		
38982	0	Xuan T.D.a, Toyama T.b, Khanh T.D.c, Tawata S.d, Nakagoshi N.a	Allelopathic interference of sweet potato with cogongrass and relevant species	Plant Ecology	213	1955-1961	2013		
38983	23888867	Xia J., Yamaji N., Ma J.F.	A plasma membrane-localized small peptide is involved in rice aluminum tolerance	Plant J. 	76	345-355	2013	CDT1,ZOS12-02,CDT2,CDT5,CDT4,CDT3	OsCDT1, OsCCX2, CCX2, OsNCX8, NCX8,OsART1, STAR3, OsZOS12-02, ART1,OsCDT2,OsCDT5,OsCDT4,OsCDT3
38984	0	Shirasawa K.a d, Sekii T.a, Ogihara Y.a, Yamada T.a, Shirasawa S.a, Kishitani S.a, Sasaki K.b, Nishimura M.c, Nagano K.b, Nishio T.a	Identification of the chromosomal region responsible for high-temperature stress tolerance during the grain-filling period in rice	Molecular Breeding	32	223-232	2013		
38985	0	Khin O.M.a, Sato M.b, Li-Tao T.a, Matsue Y.b, Yoshimura A.b, Mochizuki T.b	Close association between aleurone traits and lipid contents of rice grains observed in widely different genetic resources of Oryza sativa	Plant Prod. Sci.	16	41-49	2013		
38986	0	Ashikawa I.a, Ishikawa R.b	A population genetics-based approach reveals candidate gene regions important in the determination of resistance specificity for the Pik family of rice blast resistance genes	Journal of General Plant Pathology	79	178-181	2013		
38987	0	Sato H.a, Shimizu T.b, Kawai K.b, Kaku K.b, Arakawa A.a, Tachibana T.c, Takamizo T.a	Herbicide-resistant tall fescue with cytoplasmic male sterility selected by a mutated rice acetolactate synthase gene	Crop Sci.	53	201-207	2013		
38988	0	Adachi Y.a, Kimura K.b, Saigusa M.c, Takahashi Y.a, Ohyama T.a, Watanabe H.a	Growth promotion of rice (Oryza sativa L.) seedlings by application of L-beta-phenyllactic acid	Asian Journal of Plant Sciences	12	87-91	2013		
38989	0	Lee M.S.a, Kang B.M.a, Lee J.E.a, Choi W.J.b, Ko J.a, Choi J.E.c, An K.N.d, Kwon O.D.d, Park H.G.d, Shin H.R.d, Lee I.d, Kim J.K.d, Kim H.Y.a	How do extreme wet events affect rice quality in a changing climate?	Agriculture, Ecosystems and Environment	171	47-54	2013		
38990	24511713	Borges Bevilacqua C.a, Ramirez Monzon D.a, Venske E.a, Basu S.b, Paulo Zimmer D.a	Application of stress indices for low temperature and deep sowing stress screening of rice genotypes	Pakistan Journal of Biological Sciences	16	1618-1622	2013		
38991	0	Schaedler C.E.a, Noldin J.A.b, Eberhardt D.S.b, Agostinetto D.c, Burgos N.R.d	Globe fringerush (fimbristylis miliacea) cross resistance to ALS-inhibitor herbicides under field conditions in irrigated rice in the south of Brazil [Resist?ncia cruzada de herbicidas inibidores da ALS em cuminho (fimbristylis miliacea) sob condi??es de campo em lavouras de arroz irrigado no sul do Brasil]	Planta Daninha	31	893-902	2013		
38992	0	Samonte S.O.P.B.a, Tabien R.E.b, Wilson L.T.b	Parental Selection in Rice Cultivar Improvement	Rice Science	20	45-51	2013		
38993	0	Quezada C., Herna?z S., Vidal I., Alvarado R., Gallegos R., Ya?ez W.	Selection of rice genotypes (Oryza sativa) with high nitrogen agronomic efficiency in an Acuic Durixererts soil, central-southern Chile [Selecci?n de genotipos de arroz (oryza sativa l.) con alta ef ciencia agron?mica de nitr?geno en un suelo acuic durixererts, en la zona centro - sur de Chile]	Ciencia e Investigacion Agraria	40	375-386	2013		
38994	0	Tavares L.C., Fonseca D.A.R., Brunes A.P., Rufino C.A., Meneguello G.E., Barros A.C.S.A.	Performance of rice seeds treated with zinc, boron, and molybdenum [Desempenho de sementes de arroz tratadas com zinco, boro e molibd?nio]	Journal of Seed Science	35	532-539	2013		
38995	0	Shariatmadari Z.a, Riahi H.a, Seyed Hashtroudi M.b, Ghassempour A.c, Aghashariatmadary Z.d	Plant growth promoting cyanobacteria and their distribution in terrestrial habitats of Iran	Soil Sci. Plant Nutr.	59	535-547	2013		
38996	0	Morales-Ortega A.a, Ni?o-Medina G.b, Carvajal-Mill?n E.a, Gardea-B?jar A.c, Torres-Ch?vez P.d, L?pez-Franco Y.a, Rasc?n-Chu A.a, Lizardi-Mendoza J.a	Ferulated arabinoxylans from cereals. A review of their physico-chemical characteristics and gelling capability [Los arabinoxilanos ferulados de cereales. Una revisi?n de sus caracter?sticas fisicoqu?micas y capacidad gelificante]	Revista Fitotecnia Mexicana	36	439-446	2013		
38997	0	Sanes F.S.M.a, Castilhos R.M.V.b, Scivittaro W.B.c, Vahl L.C.b, de Morais J.R.b	Root morphology and potassium uptake kinetic parameters in irrigated rice genotypes [Morfologia de ra?zes e cin?tica de absor??o de pot?ssio em gen?tipos de arroz irrigado]	Rev. Bras. Cienc. Solo	37	688-697	2013		
38998	0	Schaedler C.E.a, Noldin J.A.b, Agostinetto D.c, Dal Magro T.d, Fontana L.C.c	Germination and growth of Fimbristylis miliacea biotypes resistant and susceptible to acetolactate synthase-inhibiting herbicides [Germina??o e crescimento de bi?tipos de Fimbristylis miliacea resistente e suscet?vel aos herbicidas inibidores da enzima acetolactato sintase]	Planta Daninha	31	687-694	2013		
38999	0	Montcho D.a b, Futakuchi K.a, Agbangla C.b, Semon M.c, Dieng I.a, Sie M.a	Morphological and phenological response of African rice (Oryza glaberrima steud.) under different hydrological conditions	Asian Journal of Plant Sciences	12	79-86	2013		
39000	0	Kanawapee N.a, Sanitchon J.b, Srihaban P.c, Theerakulpisut P.a	Physiological changes during development of rice (Oryza sativa L.) varieties differing in salt tolerance under saline field condition	Plant Soil	370	89-101	2013		
39001	0	Streck N.A., Uhlmann L.O., Gabriel L.F.	Leaf development of cultivated rice and weedy red rice under elevated temperature scenarios [Desenvolvimento foliar de arroz cultivado e arroz vermelho EM cen?rios de aumento de temperatura]	Revista Brasileira de Engenharia Agricola e Ambiental	17	190-199	2013		
39002	0	Guimar?es C.M.a, Stone L.F.a, Rangel P.H.N.a, Silva A.C.L.b	Tolerance of upland rice genotypes to water deficit [Toler?ncia ? defici?ncia h?drica de gen?tipos de arroz de terras altas]	Revista Brasileira de Engenharia Agricola e Ambiental	17	805-810	2013		
39003	0	Kaloumenos N.S.a c, Capote N.b, Aguado A.b, Eleftherohorinos I.G.a	Red rice (Oryza sativa) cross-resistance to imidazolinone herbicides used in resistant rice cultivars grown in northern Greece	Pestic Biochem Physiol	105	177-183	2013		
39004	0	da Silva L.P.a, Mendon?a Alves B.b, Da Silva L.S.c, Pocojeski E.d, Andr? Kaminski T.e, Sampaio Roberto B.d	Nitrogen fertilization on industrial yield and composition of food-irrigated rice grains [Aduba??o nitrogenada sobre rendimento industrial e composi??o dos gr?os de arroz irrigado]	Ciencia Rural	43	1128-1133	2013		
39005	0	G?ria M.M.a, Ghini R.b, Bettiol W.b	Elevated atmospheric CO2 concentration increases rice blast severity	Trop Plant Pathol	38	253-257	2013		
39006	0	Beber-Rodrigues M., Scussel V.M.	Mycoflora and mycotoxicological quality of four freshly harvested paddy rice cultivars and relation with harvest to industry reception timing	Rice Science	20	303-308	2013		
39007	0	Terra T.G.R.a, Leal T.C.A.B.b, Bor?m A.a, Rangel P.H.N.c	Upland rice tolerance to drought [Toler?ncia de linhagens de arroz de terras altas ? seca]	Pesquisa Agropecuaria Tropical	43	201-208	2013		
39008	0	Mingotte F.L.C.a, Hanashiro R.K.b, Filho D.F.b	Response of rice cultivars to nitrogen in upland conditions	Revista Ceres	60	86-95	2013		
39009	24511695	Hussain H.a, Yusoff M.K.b, Ramli M.F.b, Latif P.A.b, Juahir H.b, Zawawi M.A.M.c	Temporal patterns and source apportionment of nitrate-nitrogen leaching in a paddy field at Kelantan, Malaysia	Pakistan Journal of Biological Sciences	16	1524-1530	2013		
39010	0	Vogel G.F.a, Martinkoski L.b, Martins P.J.c, Bichel A.d	Agronomic performance of Azospirillum brasilense in rice culture: A review [Desempenho agron?mico de Azospirillum brasilense na cultura do arroz: uma revis?o]	Revista em Agronegocio e Meio Ambiente	6	567-578	2013		
39011	0	Macedo W.R., Ara?jo D.K., Castro P.R.D.C.E.	Unravelling the physiologic and metabolic action of thiamethoxam on rice plants	Pestic Biochem Physiol	107	244-249	2013		
39012	0	Dallagnol L.J.a, Rodrigues F.?.a, Chaves A.R.M.b, Vale F.X.R.a, Damatta F.M.b	Photosynthesis and sugar concentration are impaired by the defective active silicon uptake in rice plants infected with Bipolaris oryzae	Plant Pathol.	62	120-129	2013		
39013	0	?anculao G.D.a, C?rcamo M.P.a, de los Santos O.A.b, Vel?squez V.B.a	cold tolerance evaluation in Chilean rice genotypes at the germination stage	Chilean Journal of Agricultural Research	73	3-8	2013		
39014	0	Chauhan B.S.	Effect of Shade on Growth and Yield of Weedy Rice (Oryza sativa L.) Biotypes and a Rice (Oryza sativa L.) Cultivar from Asia	Journal of Crop Improvement	27	272-280	2013		
39015	0	Sartori G.M.S.a, Marchesan E.b, Azevedo C.F.b, Filho A.C.b, Roso R.b, Coelho L.L.b, Oliveira M.L.b	Effects of irrigated rice sowing season and imazapyr + imazapic time of application on rice grain yield and red rice management [Efeito da ?poca de semeadura de arroz irrigado e do momento de aplica??o de imazapyr+imazapic no rendimento de gr?os de arroz e no manejo do arroz-vermelho]	Planta Daninha	31	631-644	2013		
39016	0	Westendorff N.R., Agostinetto D., Ulguim A.R., Langaro A.C., Th?rmer L.	Initial growth and competitive ability of yellow nutsedge and irrigated rice [crescimento inicial e habilidade competitiva de tiririca-amarela e arroz irrigado]	Planta Daninha	31	813-821	2013		
39017	0	Julia C.a, Dingkuhn M.a b	Predicting temperature induced sterility of rice spikelets requires simulation of crop-generated microclimate	European Journal of Agronomy	49	50-60	2013		
39018	0	Sena A.P.A.a, Chaibub A.A.a, C?rtes M.V.C.B.b, Silva G.B.c, Silva-Lobo V.L.b, Prabhu A.S.b, Filippi M.C.C.b, Ara?jo L.G.a	Increased enzymatic activity in rice leaf blast suppression by crude extract of Epicoccum sp	Trop Plant Pathol	38	387-397	2013		
39019	0	Menezes V.G.a, Kalsing A.a, Mariot C.H.P.b, Grohs D.S.b, Freitas T.F.S.a	Reduction of seed production of red rice escapes in clearfield rice [Redu??o da produ??o de sementes de escapes de plantas de arroz-vermelho em arroz clearfield]	Planta Daninha	31	919-928	2013		
39020	0	Echeverr?a A.L.a, Carmona M.A.b, Guti?rrez S.A.a	Transmission of Trichoconiella padwickii to rice coleoptiles [Transmisi?n de Trichoconiella padwickii a cole?ptilos de arroz]	Trop Plant Pathol	38	346-348	2013		
39021	0	Puteh A.B.a, Saragih A.A.a, Ismail M.R.a, Mondal M.M.A.a b	Chlorophyll fluorescence parameters of cultivated (Oryza sativa L. ssp. indica) and weedy rice (Oryza sativa L. var. nivara) genotypes under water stress	Aust J Crop Sci	7	1277-1283	2013		
39022	0	Seesang J., Sripicchitt P., Somchit P., Sreewongchai T.	Genotypic correlation and path coefficient for some agronomic traits of hybrid and inbred rice (Oryza sativa L.) cultivars	Asian Journal of Crop Science	5	319-324	2013		
39023	0	Boldrin P.F.a, Faquin V.a, Ramos S.J.a, Boldrin K.V.F.b, ?vila F.W.a, Guilherme L.R.G.a	Soil and foliar application of selenium in rice biofortification	Journal of Food Composition and Analysis	31	238-244	2013		
39024	0	Schurt D.A., Rodrigues F.A., Souza N.F.A., Reis R.D.	Efficiency of different molecules on the reduction of sheath blight symptoms in rice and on Rhizoctonia solani growth in vitro [Efici?ncia de diferentes mol?culas na redu??o dos sintomas da queima das bainhas em arroz e no crescimento de Rhizoctonia solani in vitro]	Revista Ceres	60	221-225	2013		
39025	0	Lopes R.A.a, Buzetti S.b, Teixeira Filho M.C.M.b, Sabin Benett C.G.c, Arf M.V.d	Doses, sources and application times of nitrogen on rice grown in no tillage system [Doses, fontes e ?pocas de aplica??o de nitrog?nio em arroz de terras altas cultivado em sistema de semeadura direta]	Revista Caatinga	26	79-87	2013		
39026	0	Bhatia P.a b, Jain R.K.a, Chowdhury V.K.a	Genetic variability, correlation and path coefficient analysis for grain yield and its components in Rice (Oryza sativa L.) Genotypes	Ann Biol	29	282-287	2013		
39027	0	Mathew R., Raj S.K., Jose N., Leenakumary S.	Comparative efficacy of penoxsulam and pyrazosulfuron ethyl for weed control in direct - Seeded puddle rice (Oryza sativa)	Indian Journal of Agricultural Sciences	83	1420-1422	2013		
39028	0	Singh A.K.a, Meena M.K.a, Bharati R.C.a, Gade R.M.a b	Effect of sulphur and zinc management on yield, nutrient uptake, changes in soil fertility and economics in rice (Oryza sativa)-lentil (Lens culinaris) cropping system	Indian Journal of Agricultural Sciences	83	344-348	2013		
39029	0	Anitha Vasline Y.	Chlorophyll and viable mutations in rice (Oryza sativa L.)	Plant Archives	13	531-533	2013		
39030	0	Anitha Vasline Y.	An investigation on induced mutations in rice (Oryza sativa L.)	Plant Archives	13	555-557	2013		
39031	0	Jha Y.a, Subramanian R.B.b	Paddy plants inoculated with PGPR show better growth physiology and nutrient content under saline conditions	Chilean Journal of Agricultural Research	73	213-219	2013		
39032	0	Satheeshkumar P., Saravanan K.	Genetic divergence, variability and correlation studies in rice (Oryza sativa L.)	Plant Archives	13	369-373	2013		
39033	0	Prasannakumar N.R.a, Chander S.a, Sahoo R.N.b, Gupta V.K.b	Assessment of Brown Planthopper, (Nilaparvata lugens) [St?l], damage in rice using hyperspectral remote sensing	International Journal of Pest Management	59	180-188	2013		
39034	0	Singh K.a, Singh S.R.a, Singh J.K.a b, Rathore R.S.a b, Singh S.P.a, Roy R.a	Effect of age of seedling and spacing on yield, economics, soil health and digestibility of rice (Oryza sativa) genotypes under system of rice intensification	Indian Journal of Agricultural Sciences	83	479-483	2013		
39035	0	Devkota K.P.a, Manschadi A.M.b, Lamers J.P.A.c, Humphreys E.d, Devkota M.a, Egamberdiev O.e, Gupta R.K.f, Sayre K.D.g, Vlek P.L.G.c	Growth and yield of rice (Oryza sativa L.) under resource conservation technologies in the irrigated drylands of Central Asia	Field Crops Res.	149	115-126	2013		
39036	0	Sawant V.a, Patil A.a, Kelkar B.a, Narangalkar A.b	Bio-efficacy of insecticides against caseworm Nymphula depunctalis Guenee (Pyralidae: Lepidoptera) of rice Oryza sativa L.	Pestology	37	26-29	2013		
39037	0	Jha Y.a, Subramanian R.B.b	Paddy physiology and enzymes level is regulated by rhizobacteria under saline stress	Journal of Applied Botany and Food Quality	85	168-173	2013		
39038	0	Hasan M.a b, Sarker R.H.a c	In vitro selection for NaCl salt tolerance in aromatic rice (Oryza sativa) genotypes	Indian Journal of Agricultural Sciences	83	1221-1226	2013		
39039	0	Chattopadhyay K., Nath D., Das G., Mohanta R.L., Marndi B.C., Singh D.P., Sarkar R.K., Singh O.N.	Phenotyping and QTL-linked marker-based genotyping of rice lines with varying level of salt tolerance at flowering stage	Indian Journal of Genetics and Plant Breeding	73	434-437	2013		
39040	0	Gaind S.a, Singh Y.V.b	Soil Organic Carbon in Relation to Nutrient Regimes and Crop Rotation Under Rice-Based Cropping System	Journal of Crop Improvement	27	170-185	2013		
39041	0	Singh A.K.a, Singh A.K.a, Mall A.K.b, Singh P.K.b	Analysis of correlation and path coefficients among yield and biochemical traits under irrigated and reproductive stage drought stress in Oryza sativa L.	Vegetos	26	50-57	2013		
39042	0	Singh S.D.a, Chakrabarti B.a, Muralikrishna K.S.a, Chaturvedi A.K.a, Kumar V.a, Mishra S.a, Harit R.a b	Yield response of important field crops to elevated air temperature and CO2 level	Indian Journal of Agricultural Sciences	83	1009-1012	2013		
39043	0	Kaushal P., Sharma H.K.	Convective dehydration kinetics of noodles prepared from taro (Colocasia esculenta), rice (Oryza sativa) and pigeonpea (Cajanus cajan) flours	Agricultural Engineering International: CIGR Journal	15	202-212	2013		
39044	24494531	Rakshit A.	Pest and disease tolerance in rice cv Pusa Basmati as related to different locally available organic manures grown in new alluvail region of West Bengal, India	Pakistan Journal of Biological Sciences	16	593-597	2013		
39045	0	Mohanty M.a, Nanda S.S.a, Barik A.K.a b	Effect of integrated nutrient management on growth, yield, nutrient uptake and economics of wet season rice (Oryza sativa) in Odisha	Indian Journal of Agricultural Sciences	83	599-604	2013		
39046	0	Manjunath K.B., Padmanabhan M., Shamaraj, Suresh Naik K.P., Hanumanthappa M.	Effect of weed control treatments on grain yield, nutrient uptake and soil microflora in transplanted rice (Oryza sativa L.) in coastal Karnataka, India	Plant Archives	13	521-525	2013		
39047	24199713	Wonni I., Cottyn B., Detemmerman L., Dao S., Ouedraogo L., Sarra S., Tekete C., Poussier S., Corral R., Triplett L., Koita O., Koebnik R., Leach J., Szurek B., Maes M., Verdier V.	Analysis of Xanthomonas oryzae pv. oryzicola population in Mali and Burkina Faso reveals a high level of genetic and pathogenic diversity.	Phytopathology	104(5)	520-31	2014		
39048	24158358	Dang T.T., Shimatani Z., Kawano Y., Terada R., Shimamoto K.	Gene Editing a Constitutively Active OsRac1 by Homologous Recombination-Based Gene Targeting Induces Immune Responses in Rice.	Plant Cell Physiol.	54(12)	2058-70	2013		
39049	23807236	Li X., Li P., Zhang Q., Li R., Zhang W., Zhang Z., Ding X., Tang X.	Multi-component immunochromatographic assay for simultaneous detection of aflatoxin B1, ochratoxin A and zearalenone in agro-food.	Biosens Bioelectron	49	426-32	2013		
39050	24236092	Luo X., Gao Z., Shi T., Cheng Z., Zhang Z., Ni Z.	Identification of miRNAs and Their Target Genes in Peach (Prunus persica L.) Using High-Throughput Sequencing and Degradome Analysis.	PLoS ONE	8(11)	e79090	2013		
39051	24265739	Xu R., Zhang S., Huang J., Zheng C.	Genome-Wide Comparative In Silico Analysis of the RNA helicase Gene Family in Zea mays and Glycine max: A Comparison with Arabidopsis and Oryza sativa.	PLoS ONE	8(11)	e78982	2013		
39052	24253199	Arenhart R.A., Bai Y., Oliveira L.F., Neto L.B., Schunemann M., Maraschin F.D., Mariath J., Silverio A., Sachetto-Martins G., Margis R., Wang Z.Y., Margis-Pinheiro M.	New insights into aluminum tolerance in rice: ASR5 protein binds in the STAR1 promoter and other aluminum responsive genes.	Mol Plant	7(4)	709-21	2014	MT1G,ASR5,FRDL4,STAR1	OsMT1g, MT1g, MT1Le, OsMT1Le ,OsASR5, Asr5, Asr1, OsASR1, OsASR2, ASR2,OsFRDL4, MATE,OsENA2, OsABCI12, ENA2, ABCI12, OsSTAR1, OsSATR1
39053	24237627	Wang L., Shen R., Chen L., Liu Y.G.	Characterization of a novel DUF1618 gene family in rice.	J Integr Plant Biol	56(2)	151-8	2014		
39054	24209631	Joo J., Choi H.J., Lee Y.H., Lee S., Lee C.H., Kim C.H., Cheong J.J., Choi Y.D., Song S.I.	Over-expression of BvMTSH, a fusion gene for maltooligosyltrehalose synthase and maltooligosyltrehalose trehalohydrolase, enhances drought tolerance in transgenic rice.	BMB Rep	47(1)	27-32	2014		
39055	24214894	Jacquemin J., Ammiraju J.S., Haberer G., Billheimer D.D., Yu Y., Liu L.C., Rivera L.F., Mayer K., Chen M., Wing R.A.	15 MYA of evolution in the Oryza genus shows extensive gene family expansion.	Mol Plant	7(4)	642-56	2014		
39056	24231918	Zhang M., Pinson S.R., Tarpley L., Huang X.Y., Lahner B., Yakubova E., Baxter I., Guerinot M.L., Salt D.E.	Mapping and validation of quantitative trait loci associated with concentrations of 16 elements in unmilled rice grain.	Theor. Appl. Genet.	127(1)	137-65	2014		
39057	24193246	Nunes O.C., Lopes A.R., Manaia C.M.	Microbial degradation of the herbicide molinate by defined cultures and in the environment.	Appl. Microbiol. Biotechnol.	97(24)	10275-91	2013		
39058	24279930	Berikten D., Kivanc M.	OPTIMIZATION OF SOLID STATE FERMENTATION FOR PHYTASE PRODUCTION BY THERMOMYCES LANUGINOSUS USING RESPONSE SURFACE METHODOLOGY.	Prep. Biochem. Biotechnol.	44(8)	834-48	2014		
39059	24214893	Kong L., Wu J., Lu L., Xu Y., Zhou X.	Interaction between Rice stripe virus disease-specific protein and host PsbP enhances virus symptoms.	Mol Plant	7(4)	691-708	2014	PSBP	PsbP, OsPsbP, psbP
39060	24148412	Zhang H.X., Chen J.B., Guo X.F., Wang H., Zhang H.S.	Highly sensitive determination of nitric oxide in biologic samples by a near-infrared BODIPY-based fluorescent probe coupled with high-performance liquid chromatography.	Talanta	116	335-42	2013		
39061	24231122	Al Atalah B., Vanderschaeghe D., Bloch Y., Proost P., Plas K., Callewaert N., Savvides S.N., Van Damme EJ.	Characterization of a type D1A EUL-related lectin from rice expressed in Pichia pastoris.	Biol. Chem.	395(4)	413-24	2014		
39062	24201892	Arends J.B., Speeckaert J., Blondeel E., De Vrieze J., Boeckx P., Verstraete W., Rabaey K., Boon N.	Greenhouse gas emissions from rice microcosms amended with a plant microbial fuel cell.	Appl. Microbiol. Biotechnol.	98(7)	3205-17	2014		
39063	24223754	Wang M., Hashimoto M., Hashidoko Y.	Repression of Tropolone Production and Induction of a Burkholderia plantarii Pseudo-Biofilm by Carot-4-en-9,10-diol, a Cell-to-Cell Signaling Disrupter Produced by Trichoderma virens.	PLoS ONE	8(11)	e78024	2013		
39064	24220652	Aubry S., Knerov? J., Hibberd J.M.	Endoreduplication is not involved in bundle-sheath formation in the C4 species Cleome gynandra.	J. Exp. Bot.	65(13)	3557-66	2014		
39065	24244664	Zheng X., Chen L., Li M., Lou Q., Xia H., Wang P., Li T., Liu H., Luo L.	Transgenerational variations in DNA methylation induced by drought stress in two rice varieties with distinguished difference to drought resistance.	PLoS ONE	8(11)	e80253	2013		
39066	24270514	Belimov A.A., Dodd I.C., Safronova V.I., Dumova V.A., Shaposhnikov A.I., Ladatko A.G., Davies W.J.	Abscisic acid metabolizing rhizobacteria decrease ABA concentrations in planta and alter plant growth.	Plant Physiol. Biochem.	74C	84-91	2014		
39067	24280269	Hanzawa E., Sasaki K., Nagai S., Obara M., Fukuta Y., Uga Y., Miyao A., Hirochika H., Higashitani A., Maekawa M., Sato T.	Isolation of a novel mutant gene for soil-surface rooting in rice (Oryza sativa L.).	Rice (N Y)	6	30	2013	SOR1	MHZ2, OsMHZ2, OsSOR1, OsRING272, RING272, OsvWA13, vWA13
39068	23994306	Zhang Y., Wong W.T., Yung K.F.	One-step production of biodiesel from rice bran oil catalyzed by chlorosulfonic acid modified zirconia via simultaneous esterification and transesterification.	Bioresour. Technol.	147	59-64	2013		
39069	24283297	Luo X., Ji S.D., Yuan P.R., Lee H.S., Kim D.M., Balkunde S., Kang J.W., Ahn S.N.	QTL mapping reveals a tight linkage between QTLs for grain weight and panicle spikelet number in rice.	Rice (N Y)	6	33	2013		
39070	24185848	Zhao X., Zou H., Fu J., Zhou J., Du G., Chen J.	Metabolic engineering of the regulators in nitrogen catabolite repression to reduce the production of ethyl carbamate in a model rice wine system.	Appl. Environ. Microbiol.	80(1)	392-8	2014		
39071	24279508	Wu S.F., Xu G., Qi Y.X., Xia R.Y., Huang J., Ye G.Y.	Two splicing variants of a novel family of octopamine receptors with different signaling properties.	J. Neurochem.	129(1)	37-47	2014		
39072	24244410	Sun X., Zhou W., Liu H., Zhang A., Ai C.R., Zhou S.S., Zhou C.X., Wang M.Q.	Transgenic Bt Rice Does Not Challenge Host Preference of the Target Pest of Rice Leaffolder, Cnaphalocrocis medinalis (Lepidoptera: Pyralidae).	PLoS ONE	8(11)	e79032	2013		
39073	24235132	Shaik R., Ramakrishna W.	Machine learning approaches distinguish multiple stress conditions using stress responsive genes and identify candidate genes for broad resistance in rice.	Plant Physiol.	164(1)	481-95	2014		
39074	23995923	Vu B.V., Pham K.T., Nakayashiki H.	Substrate-induced transcriptional activation of the MoCel7C cellulase gene is associated with methylation of histone H3 at lysine 4 in the rice blast fungus Magnaporthe oryzae.	Appl. Environ. Microbiol.	79(21)	6823-32	2013		
39075	24200076	Furukawa T., Inagaki H., Takai R., Hirai H., Che F.S.	Two distinct EF-Tu epitopes induce immune responses in rice and Arabidopsis.	Mol. Plant Microbe Interact.	27(2)	113-24	2014		
39076	24241166	Song X.M., Huang Z.N., Duan W.K., Ren J., Liu T.K., Li Y., Hou X.L.	Genome-wide analysis of the bHLH transcription factor family in Chinese cabbage (Brassica rapa ssp. pekinensis).	Mol. Genet. Genomics	289(1)	77-91	2014		
39077	24250219	Pandey B., Sharma P., Pandey D.M., Sharma I., Chatrath R.	Identification of new aquaporin genes and single nucleotide polymorphism in bread wheat.	Evol. Bioinform. Online	9	437-52	2013		
39078	24274685	Liu L., Veerappan V., Pu Q., Cheng C., Wang X., Lu L., Allen R.D., Guo G.	High-Resolution Hydrodynamic Chromatographic Separation of Large DNA Using Narrow, Bare Open Capillaries: A Rapid and Economical Alternative Technology to Pulsed-Field Gel Electrophoresis?	Anal. Chem.	86(1)	729-36	2014		
39079	24244592	Cheng X., Cheng J., Huang X., Lai Y., Wang L., Du W., Wang Z., Zhang H.	Dynamic Quantitative Trait Loci Analysis of Seed Reserve Utilization during Three Germination Stages in Rice.	PLoS ONE	8(11)	e80002	2013		
39080	24191997	Ou T., Zhu R.L., Chen Z.Y., Zhang Q.Y.	Isolation and identification of a lethal rhabdovirus from farmed rice field eels Monopterus albus.	Dis. Aquat. Org.	106(3)	197-206	2013		
39081	24192013	Kanchiswamy C.N., Mohanta T.K., Capuzzo A., Occhipinti A., Verrillo F., Maffei M.E., Malnoy M.	Differential expression of CPKs and cytosolic Ca2+ variation in resistant and susceptible apple cultivars (Malus x domestica) in response to the pathogen Erwinia amylovora and mechanical wounding.	BMC Genomics	14(1)	760	2013		
39082	24267591	Bai C., Rivera S.M., Medina V., Alves R., Vilaprinyo E., Sorribas A., Canela R., Capell T., Sandmann G., Christou P., Zhu C.	An in vitro system for the rapid functional characterization of genes involved in carotenoid biosynthesis and accumulation.	Plant J.	77(3)	464-75	2014		
39083	24239699	Hidalgo P.I., Ull?n RV., Albillos S.M., Montero O., Fern?ndez-Bodega MA., Garc?a-Estrada C., Fern?ndez-Aguado M., Mart?n JF.	Molecular characterization of the PR-toxin gene cluster in Penicillium roqueforti and Penicillium chrysogenum: Cross talk of secondary metabolite pathways.	Fungal Genet. Biol.	62	11-24	2014		
39084	24192297	Akiba T., Hibara K.I., Kimura F., Tsuda K., Shibata K., Ishibashi M., Moriya C., Nakagawa K., Kurata N., Itoh J.I., Ito Y.	Organ fusion and defective shoot development in ONI3 mutants of rice.	Plant Cell Physiol.	55(1)	42-51	2014	ROC1,PIN10A,PIN5A,ONI3,_,IAA14,IAA7	Roc1(t), GL2-1, OsHDZ23, OsHDZIP23, HDZ23, HDZIP23,PIN3A, OsPIN3a, OsPIN3t, OsPIN10a, OsPIN3,OsPIN5a, OsPIN6,OsONI3,,OsIAA14, AUX/IAA14, OsAUX/IAA14 ,OsIAA7, DLN51, OsDLN51
39085	24247851	Karan R., Subudhi P.K.	Overexpression of an adenosine diphosphate-ribosylation factor gene from the halophytic grass Spartina alterniflora confers salinity and drought tolerance in transgenic Arabidopsis.	Plant Cell Rep.	33(2)	373-84	2014		
39086	24260239	Sun F., Yuan X., Xu Q., Zhou T., Fan Y., Zhou Y.	Overexpression of rice black-streaked dwarf virus p7-1 in Arabidopsis results in male sterility due to non-dehiscent anthers.	PLoS ONE	8(11)	e79514	2013		
39087	24197785	Mao B., Liu X., Hu D., Li D.	Co-expression of RCH10 and AGLU1 confers rice resistance to fungal sheath blight Rhizoctonia solani and blast Magnorpathe oryzae and reveals impact on seed germination.	World J. Microbiol. Biotechnol.	30(4)	1229-38	2014		
39088	24185032	Alexander M., Garbus H., Smith A.L., Rosenkrantz T.S., Fitch R.H.	Behavioral and histological outcomes following neonatal HI injury in a preterm (P3) and term (P7) rodent model.	Behav. Brain Res.	259C	85-96	2014		
39089	24243689	Singh R., Lee J.E., Dangol S., Choi J., Yoo R.H., Moon J.S., Shim J.K., Rakwal R., Agrawal G.K., Jwa N.S.	Protein interactome analysis of twelve mitogen-activated protein kinase kinase kinase in rice using a yeast two-hybrid system.	Proteomics	14(1)	105-15	2014		
39090	24280346	Ballini E., Nguyen T.T., Morel J.B.	Diversity and genetics of nitrogen-induced susceptibility to the blast fungus in rice and wheat.	Rice (N Y)	6	32	2013		
39091	24189714	Wang L., Cheng J., Lai Y., Du W., Huang X., Wang Z., Zhang H.	Identification of QTLs with additive, epistatic and QTL X development interaction effects for seed dormancy in rice.	Planta	239(2)	411-20	2014		
39092	24237606	Quilis J., L?pez-Garc?a B., Meynard D., Guiderdoni E., San Segundo B.	Inducible expression of a fusion gene encoding two proteinase inhibitors leads to insect and pathogen resistance in transgenic rice.	Plant Biotechnol. J.	12(3)	367-77	2014		
39093	24200074	Deng C.Y., Deng A.H., Sun S.T., Wang L., Wu J., Wu Y., Chen X.Y., Fang R., Wen T.Y., Qian W.	The Periplasmic PDZ Domain-Containing Protein Prc Modulates Full Virulence, Envelop Stress Responses and Directly Interacts with Dipeptidyl Peptidase of Xanthomonas oryzae pv. oryzae.	Mol. Plant Microbe Interact.	27(2)	101-12	2014		
39094	24222495	Castro R.C., Roberto I.C.	Selection of a Thermotolerant Kluyveromyces marxianus Strain with Potential Application for Cellulosic Ethanol Production by Simultaneous Saccharification and Fermentation.	Appl. Biochem. Biotechnol.	172(3)	1553-64	2014		
39095	24280309	Bashir K., Takahashi R., Akhtar S., Ishimaru Y., Nakanishi H., Nishizawa N.K.	The knockdown of OsVIT2 and MIT affects iron localization in rice seed.	Rice (N Y)	6	31	2013		
39096	24239268	Singh A., Prasad S.M.	Effect of agro-industrial waste amendment on Cd uptake in Amaranthus caudatus grown under contaminated soil: An oxidative biomarker response.	Ecotoxicol. Environ. Saf.	100	105-13	2014		
39097	24206428	Ibraheem O., Botha C.E., Bradley G., Dealtry G., Roux S.	Rice sucrose transporter1 (OsSUT1) up-regulation in xylem parenchyma is caused by aphid feeding on rice leaf blade vascular bundles.	Plant Biol (Stuttg)	16(4)	783-91	2014		
39098	24238612	Wang Y., Chen W., Qin P., Huang Y., Ma B., Ouyang X., Chen X., Li S.	Characterization and Fine Mapping of GLABROUS RICE 2 in Rice.	J Genet Genomics	40(11)	579-82	2013		
39099	24151203	Hayashi-Tsugane M., Takahara H., Ahmed N., Himi E., Takagi K., Iida S., Tsugane K., Maekawa M.	A Mutable Albino Allele in Rice Reveals that Formation of Thylakoid Membranes Requires the SNOW-WHITE LEAF1 Gene.	Plant Cell Physiol.	55(1)	3-15	2014		
39100	24226906	Lu M.X., Cao S.S., Du Y.Z., Liu Z.X., Liu P., Li J.	Diapause, signal and molecular characteristics of overwintering Chilo suppressalis (Insecta: Lepidoptera: Pyralidae).	Sci Rep	3	3211	2013		
39101	24286630	Wang C.L., Qin T.F., Yu H.M., Zhang X.P., Che J.Y., Gao Y., Zheng C.K., Yang B., Zhao K.J.	The broad bacterial blight resistance of rice line CBB23 is triggered by a novel TAL effector of Xanthomonas oryzae pv. oryzae.	Mol. Plant Pathol.	15(4)	333-41	2014		
39102	24273057	Lei C., Han F., Sun Q., Li W.C., Lu A.H.	Confined Nanospace Pyrolysis for the Fabrication of Coaxial Fe3 O4 @C Hollow Particles with a Penetrated Mesochannel as a Superior Anode for Li-Ion Batteries.	Chemistry	20(1)	139-45	2014		
39103	24279397	Bauters L., Haegeman A., Kyndt T., Gheysen G.	Analysis of the transcriptome of Hirschmanniella oryzae to explore potential survival strategies and host-nematode interactions.	Mol. Plant Pathol.	15(4)	352-63	2014		
39104	24265778	Chauhan H., Khurana N., Agarwal P., Khurana J.P., Khurana P.	A Seed Preferential Heat Shock Transcription Factor from Wheat Provides Abiotic Stress Tolerance and Yield Enhancement in Transgenic Arabidopsis under Heat Stress Environment.	PLoS ONE	8(11)	e79577	2013		
39105	24279904	Scholey A.B., Camfield D.A., Hughes M.E., Woods W., Stough C.K., White D.J., Gondalia S.V., Frederiksen P.D.	A randomized controlled trial investigating the neurocognitive effects of Lacprodan(R) PL-20, a phospholipid-rich milk protein concentrate, in elderly participants with age-associated memory impairment: the Phospholipid Intervention for Cognitive Ageing Reversal (PLICAR): study protocol for a randomized controlled trial.	Trials	14(1)	404	2013		
39106	24262840	Nakhshiniev B., Biddinika M.K., Gonzales H.B., Sumida H., Yoshikawa K.	Evaluation of hydrothermal treatment in enhancing rice straw compost stability and maturity.	Bioresour. Technol.	151C	306-313	2013		
39107	24121292	Chen H., Xie W., He H., Yu H., Chen W., Li J., Yu R., Yao Y., Zhang W., He Y., Tang X., Zhou F., Deng X.W., Zhang Q.	A High-Density SNP Genotyping Array for Rice Biology and Molecular Breeding.	Mol Plant	7(3)	541-53	2014		
39108	24211267	Zhang H., Liu Y., Zhou J., Wang J., Sun B.	Amylopectin is the anti-fatigue ingredient in glutinous rice.	Int. J. Biol. Macromol.	63	240-3	2014		
39109	24287529	Huang W., Huang J., Wang X., Wang F., Shi J.	Comparability of Red/Near-Infrared Reflectance and NDVI Based on the Spectral Response Function between MODIS and 30 Other Satellite Sensors Using Rice Canopy Spectra.	Sensors (Basel)	13(12)	16023-50	2013		
39110	24285580	Hamel D., Sanchez M., Duhamel F., Roy O., Honor? JC., Noueihed B., Zhou T., Nadeau-Vall?e M., Hou X., Lavoie J.C., Mitchell G., Mamer O., Chemtob S.	G-protein-coupled receptor 91 and Succinate Are Key Contributors in Neonatal Postcerebral Hypoxia-Ischemia Recovery.	Arterioscler. Thromb. Vasc. Biol.	34(2)	285-93	2014		
39111	24275941	Asif M.H., Lakhwani D., Pathak S., Bhambhani S., Bag S.K., Trivedi P.K.	Genome-wide identification and expression analysis of the mitogen-activated protein kinase gene family from banana suggest involvement of specific members in different stages of fruit ripening.	Funct. Integr. Genomics	14(1)	161-75	2014		
39112	24220337	Kong X., Pan J., Zhang D., Jiang S., Cai G., Wang L., Li D.	Identification of mitogen-activated protein kinase kinase gene family and MKK-MAPK interaction network in maize.	Biochem. Biophys. Res. Commun.	441(4)	964-9	2013		
39113	24259682	Ishida S., Uebayashi N., Tazoe Y., Ikeuchi M., Homma K., Sato F., Endo T.	Diurnal and Developmental Changes in Energy Allocation of Absorbed Light at PSII in Field-grown Rice.	Plant Cell Physiol.	55(1)	171-82	2014		
39114	24270018	Ito T., Olesen N.J.	Susceptibility of various Japanese freshwater fish species to an isolate of viral haemorrhagic septicaemia virus (VHSV) genotype IVb.	Dis. Aquat. Org.	107(1)	1-8	2013		
39115	24240781	Romero L.E., Lozano I., Garavito A., Carabali S.J., Triana M., Villareal N., Reyes L., Duque M.C., Martinez C.P., Calvert L., Lorieux M.	Major QTLs Control Resistance to Rice Hoja Blanca Virusand Its Vector Tagosodes orizicolus.	G3 (Bethesda)	4(1)	133-42	2014		
39116	23907589	Ho J.N., Son M.E., Lim W.C., Lim S.T., Cho H.Y.	Germinated brown rice extract inhibits adipogenesis through the down-regulation of adipogenic genes in 3T3-L1 adipocytes.	Plant Foods Hum Nutr	68(3)	274-8	2013		
39117	24064300	Matsumoto H., Koganei K., Nishida N., Koyama Y., Saito S., Kataoka H., Ogihara J., Kasumi T.	Cell dispersion culture for the effective growth of Humicola insolens and efficient enzyme production.	J. Biosci. Bioeng.	117(3)	257-62	2014		
39118	24058573	Wang Z.H., Zhang D., Bai Y., Zhang Y.H., Liu Y., Wu Y., Lin X.Y., Wen J.W., Xu C.M., Li L.F., Liu B.	Genomewide Variation in an Introgression Line of Rice-Zizania Revealed by Whole-Genome re-Sequencing.	PLoS ONE	8(9)	e74479	2013		
39119	24058171	Park J., Lee Y.H.	Bidirectional-genetics platform, a dual-purpose mutagenesis strategy for filamentous fungi.	Eukaryotic Cell	12(11)	1547-53	2013		
39120	24058362	Zhou G., Xu D., Xu D., Zhang M.	Southern rice black-streaked dwarf virus: a white-backed planthopper-transmitted fijivirus threatening rice production in Asia.	Front Microbiol	4	270	2013		
39121	24018854	Yang J.C., Li M., Xie X.Z., Han G.L., Sui N., Wang B.S.	Deficiency of Phytochrome B alleviates chilling-induced photoinhibition in rice.	Am. J. Bot.	100(9)	1860-70	2013		
39122	23999092	Jiang W., Zhou H., Bi H., Fromm M., Yang B., Weeks D.P.	Demonstration of CRISPR/Cas9/sgRNA-mediated targeted gene modification in Arabidopsis, tobacco, sorghum and rice.	Nucleic Acids Res.	41(20)	e188	2013		
39123	24057602	Li Y., Wang Y., Romeis J., Liu Q., Lin K., Chen X., Peng Y.	Bt rice expressing Cry2Aa does not cause direct detrimental effects on larvae of Chrysoperla sinica.	Ecotoxicology	22(9)	1413-21	2013		
39124	24130448	Yang Z., Peng Z., Wei S., Yu Y.	Cloning and characterization of endo-beta-1,4-glucanase genes in the common wheat line three pistils.	Genet. Mol. Biol.	36(3)	400-7	2013		
39125	24085445	Wei X.J., Tang S.Q., Shao G.N., Chen M.L., Hu Y.C., Hu P.S.	Fine mapping and characterization of a novel dwarf and narrow-leaf mutant dnl1 in rice.	Genet. Mol. Res.	12(3)	3845-55	2013		
39126	24056187	Meng M., Li B., Shao J.J., Wang T., He B., Shi J.B., Ye Z.H., Jiang G.B.	Accumulation of total mercury and methylmercury in rice plants collected from different mining areas in China.	Environ. Pollut.	184	179-86	2014		
39127	24115565	Pittelkow C.M., Adviento-Borbe MA., van Kessel C., Hill J.E., Lin Quist BA.	Optimizing rice yields while minimizing yield-scaled global warming potential.	Glob Chang Biol	20(5)	1382-93	2014		
39128	24078602	Shen Y., Lansky E., Traber M., Nevo E.	Increases in both acute and chronic temperature potentiate tocotrienol concentrations in wild barley at 'Evolution Canyon'.	Chem. Biodivers.	10(9)	1696-705	2013		
39129	24053951	Wang W., Chu H., Zhang D., Liang W.	Fine mapping and analysis of DWARF TILLER1 in controlling rice architecture.	J Genet Genomics	40(9)	493-5	2013		
39130	24041758	Siddiqui S., Ahsan H., Khan M.R., Siddiqui W.A.	Protective effects of tocotrienols against lipid-induced nephropathy in experimental type-2 diabetic rats by modulation in TGF-beta expression.	Toxicol. Appl. Pharmacol.	273(2)	314-24	2013		
39131	24039439	Konya H., Katsuno T., Tsunoda T., Yano Y., Kamitani M., Miuchi M., Hamaguchi T., Miyagawa J.I., Namba M.	Effects of combination therapy with mitiglinide and voglibose on postprandial plasma glucose in patients with type 2 diabetes mellitus.	Diabetes Metab Syndr Obes	6	317-325	2013		
39132	24036507	Liu S., Liang Q.M., Huang Y.J., Yuan X., Zhou W.W., Qiao F., Cheng J., Gurr G.M., Zhu Z.R.	Cloning, functional characterization, and expression profiles of NADPH-cytochrome P450 reductase gene from the Asiatic rice striped stem borer, Chilo suppressalis (Lepidoptera: Pyralidae).	Comp. Biochem. Physiol. B, Biochem. Mol. Biol.	166(3-4)	225-31			
39133	24086146	Liu S., Wang X., Wang H., Xin H., Yang X., Yan J., Li J., Tran L.S., Shinozaki K., Yamaguchi-Shinozaki K., Qin F.	Genome-wide analysis of ZmDREB genes and their association with natural variation in drought tolerance at seedling stage of Zea mays L.	PLoS Genet.	9(9)	e1003790	2013		
39134	24066067	Song Z., Parr J.F., Guo F.	Potential of global cropland phytolith carbon sink from optimization of cropping system and fertilization.	PLoS ONE	8(9)	e73747	2013		
39135	24002549	Ma J., Jiang Q.T., Zhang X.W., Lan X.J., Pu Z.E., Wei Y.M., Liu C., Lu Z.X., Zheng Y.L.	Structure and expression of barley starch phosphorylase genes.	Planta	238(6)	1081-1093	2013		
39136	24015925	Ghosh J.S., Chaudhuri S., Dey N., Pal A.	Functional characterization of a serine-threonine protein kinase from Bambusa balcooa that implicates in cellulose overproduction and superior quality fiber formation.	BMC Plant Biol.	13	128	2013		
39137	24273431	Zhou L., Chen Z., Lang X., Du B., Liu K., Yang G., Hu G., Li S., He G., You A.	Development and validation of a PCR-based functional marker system for the brown planthopper resistance gene Bph14 in rice.	Breed. Sci.	63(3)	347-352	2013		
39138	23995777	Pandey A., Ray S.K., Sonti R.V., Rajeshwari R.	gltB/D Mutants of Xanthomonas oryzae pv. oryzae are Virulence Deficient.	Curr. Microbiol.	68(1)	105-12	2014		
39139	24077726	Wang J., Dong H., Wang W., Gu J.D.	Reverse-transcriptional gene expression of anammox and ammonia-oxidizing archaea and bacteria in soybean and rice paddy soils of Northeast China.	Appl. Microbiol. Biotechnol.	98(6)	2675-86	2014		
39140	24128405	Xu M., Yin P., Liu X., Tang Q., Qu R., Xu Q.	Utilization of rice husks modified by organomultiphosphonic acids as low-cost biosorbents for enhanced adsorption of heavy metal ions.	Bioresour. Technol.	149	420-4	2013		
39141	24028141	Liang X., Qin L., Liu P., Wang M., Ye H.	Genes for iron-sulphur cluster assembly are targets of abiotic stress in rice, Oryza sativa.	Plant Cell Environ.	37(3)	780-94	2014		
39142	24102799	Liu Z.B., Wang J.M., Yang F.X., Yang L., Yue Y.F., Xiang J.B., Gao M., Xiong F.J., Lv D., Wu X.J., Liu N., Zhang X., Li X.F., Yang Y.	A novel membrane-bound E3 ubiquitin ligase enhances the thermal resistance in plants.	Plant Biotechnol. J.	12(1)	93-104	2014		
39143	23996237	Zhao X., Zou H., Fu J., Chen J., Zhou J., Du G.	Nitrogen regulation involved in the accumulation of urea in Saccharomyces cerevisiae.	Yeast	30(11)	437-47	2013		
39144	24034357	Yu H., Xie W., Li J., Zhou F., Zhang Q.	A whole-genome SNP array (RICE6K) for genomic breeding in rice.	Plant Biotechnol. J.	12(1)	28-37	2014		
39145	24042571	Acevedo-Garcia J., Collins N.C., Ahmadinejad N., Ma L., Houben A., Bednarek P., Benjdia M., Freialdenhoven A., Altm?ller J., N?rnberg P., Reinhardt R., Schulze-Lefert P., Panstruga R.	Fine mapping and chromosome walking towards the Ror1 locus in barley (Hordeum vulgare L.).	Theor. Appl. Genet.	126(12)	2969-82	2013		
39146	24018688	Yamamoto S., Tomiyama M., Nemoto R., Naganuma T., Ogawa T., Muramoto K.	Effects of food lectins on the transport system of human intestinal Caco-2 cell monolayers.	Biosci. Biotechnol. Biochem.	77(9)	1917-24	2013		
39147	24056072	Yuan Y., Krogh P.H., Bai X., Roelofs D., Chen F., Zhu-Salzman K., Liang Y., Sun Y., Ge F.	Microarray detection and qPCR screening of potential biomarkers of Folsomia candida (Collembola: Isotomidae) exposed to Bt proteins (Cry1Ab and Cry1Ac).	Environ. Pollut.	184	170-8	2014		
39148	24012537	Macgregor B.J., Biddle J.F., Harbort C., Matthysse A.G., Teske A.	Sulfide oxidation, nitrate respiration, carbon acquisition, and electron transport pathways suggested by the draft genome of a single orange Guaymas Basin Beggiatoa (Cand. Maribeggiatoa) sp. filament.	Mar Genomics	11	53-65	2013		
39149	24009336	Nomura T., Magome H., Hanada A., Takeda-Kamiya N., Mander L.N., Kamiya Y., Yamaguchi S.	Functional Analysis of Arabidopsis CYP714A1 and CYP714A2 Reveals That They are Distinct Gibberellin Modification Enzymes.	Plant Cell Physiol.	54(11)	1837-51	2013		
39150	24113511	Gopalakrishnan S., Vadlamudi S., Bandikinda P., Sathya A., Vijayabharathi R., Rupela O., Kudapa H., Katta K., Varshney R.K.	Evaluation of Streptomyces strains isolated from herbal vermicompost for their plant growth-promotion traits in rice.	Microbiol. Res.	169(1)	40-8	2014		
39151	24102738	Roy Choudhury S., Riesselman A.J., Pandey S.	Constitutive or seed-specific overexpression of Arabidopsis G-protein gamma subunit 3 (AGG3) results in increased seed and oil production and improved stress tolerance in Camelina sativa.	Plant Biotechnol. J.	12(1)	49-59	2014		
39152	24025514	Cho K., Shibato J., Kubo A., Kohno Y., Satoh K., Kikuchi S., Sarkar A., Agrawal G.K., Rakwal R.	Comparative analysis of seed transcriptomes of ambient ozone-fumigated 2 different rice cultivars.	Plant Signal Behav	8(11)	e26300	2013		
39153	24074460	Trobacher C.P., Zarei A., Liu J., Clark S.M., Bozzo G.G., Shelp B.J.	Calmodulin-dependent and calmodulin-independent glutamate decarboxylases in apple fruit.	BMC Plant Biol.	13	144	2013		
39154	24058671	Zhou Y., Gong Z., Yang Z., Yuan Y., Zhu J., Wang M., Yuan F., Wu S., Wang Z., Yi C., Xu T., Ryom M., Gu M., Liang G.	Mutation of the light-induced yellow leaf 1 gene, which encodes a geranylgeranyl reductase, affects chlorophyll biosynthesis and light sensitivity in rice.	PLoS ONE	8(9)	e75299	2013	LYL2,LYL1	OsGGRII, GGRII, OsGGR2, GGR2,OsChl P, CHL P, ChlP, OsGGRI, GGRI, OsGGR, GGR, OsGGR1, GGR1, OsGGR1/LYL1/OsChl P
39155	24043333	Chen H., Cheng Z., Ma X., Wu H., Liu Y., Zhou K., Chen Y., Ma W., Bi J., Zhang X., Guo X., Wang J., Lei C., Wu F., Lin Q., Liu Y., Liu L., Jiang L.	A knockdown mutation of YELLOW-GREEN LEAF2 blocks chlorophyll biosynthesis in rice.	Plant Cell Rep.	32(12)	1855-67	2013	YGL10,YGL98,PSBA,FGL,YGL1,ELL,CAB1R,CHLH,CAB2R,PSAA,SE5	CAO, OsCAO, CAO1, OsCAO1, Oslls1, Lls1, DVR, PGL,OsChlD, ChlD, CHLD, OsCHLD, Ygl7, YGL3, OsvWA12, vWA12,PsbA, psbA, OsPsbA, PSBD1, OsPSBD1, psbD1,fgl(fl), fl, fgl, OsFGL, OsPorB, PoPA, PORA, porA, OsPORA, PORB, OsPORB,OsYGL1, CHLG, Ygl1, CS, OsCHLG,chlI, OsChlI, ChlI, CHLI, OsCHLI, OsCHLI/ELL, OsELL,cab1R, LHCP, CAB, OsLhcb1, Lhcb1, Cab1, OsCAB1, Lhcb1b, OsLhcb1b, CAB2R,OsChlH, ChlH, OsCHLH,Oscab2R, CAB-2, OsLhcp, Lhcb1, Lhcb1a, OsLhcb1, OsLhcb1a ,PsaA, psaA, PsAA1, psaA1,Se5, OsHO1, OsHO-1, OsHY1, HO-1, HO1, OsSE5, YGL2, YGL2/HO1
39156	24273430	Kobayashi A., Sonoda J., Sugimoto K., Kondo M., Iwasawa N., Hayashi T., Tomita K., Yano M., Shimizu T.	Detection and verification of QTLs associated with heat-induced quality decline of rice (Oryza sativa L.) using recombinant inbred lines and near-isogenic lines.	Breed. Sci.	63(3)	339-346	2013		
39157	24033370	Park S., Byeon Y., Back K.	Functional analyses of three ASMT gene family members in rice plants.	J. Pineal Res.	55(4)	409-15	2013		
39158	24021715	Shao E., Liu S., Lin L., Guan X.	Proteolytic processing of Bacillus thuringiensis toxin Cry1Ab in rice brown planthopper, Nilaparvata lugens (St?l).	J. Invertebr. Pathol.	114(3)	255-7	2013		
39159	24079304	Tao Y., Liu Q., Wang H., Zhang Y., Huang X., Wang B., Lai J., Ye J., Liu B., Xu M.	Identification and fine-mapping of a QTL, qMrdd1, that confers recessive resistance to maize rough dwarf disease.	BMC Plant Biol.	13	145	2013		
39160	24077888	Yi C., Zhang W., Dai X., Li X., Gong Z., Zhou Y., Liang G., Gu M.	Identification and diversity of functional centromere satellites in the wild rice species Oryza brachyantha.	Chromosome Res.	21(8)	725-37	2013	CENH3,_	OsCENH3, CenH3,CRR-F
39161	24012281	Murakami K., Sasaki S., Uenishi K.	serum adiponectin concentration in relation to macronutrient and food intake in young Japanese women.	Nutrition	29(11-12)	1315-20			
39162	24090832	Yuvaraj S., Kalai Selvan R., Bhooshan Kumar V., Perelshtein I., Gedanken A., Isakkimuthu S., Arumugam S.	Sonochemical synthesis, structural, magnetic and grain size dependent electrical properties of NdVO4 nanoparticles.	Ultrason Sonochem	21(2)	599-605	2014		
39163	24102775	Company N., Nadal A., La Paz JL., Mart?nez S., Rasche S., Schillberg S., Montesinos E., Pla M.	The production of recombinant cationic alpha-helical antimicrobial peptides in plant cells induces the formation of protein bodies derived from the endoplasmic reticulum.	Plant Biotechnol. J.	12(1)	81-92	2014		
39164	24086432	Nars A., Lafitte C., Chabaud M., Drouillard S., M?lida H., Danoun S., Le Costaou?c T., Rey T., Benedetti J., Bulone V., Barker D.G., Bono J.J., Dumas B., Jacquet C., Heux L., Fliegmann J., Bottin A.	Aphanomyces euteiches Cell Wall Fractions Containing Novel Glucan-Chitosaccharides Induce Defense Genes and Nuclear Calcium Oscillations in the Plant Host Medicago truncatula.	PLoS ONE	8(9)	e75039	2013		
39165	24273421	Wang H., Xu X., Zhan X., Zhai R., Wu W., Shen X., Dai G., Cao L., Cheng S.	Identification of qRL7, a major quantitative trait locus associated with rice root length in hydroponic conditions.	Breed. Sci.	63(3)	267-274	2013		
39166	24013236	Yang J., Zhang H.M., Ying L., Li J., Lv M.F., Xie L., Li P.P., Liu X.Y., Liang-Ying D., Chen J.P.	Rice black-streaked dwarf virus genome segment S5 is a bicistronic mRNA in infected plants.	Arch. Virol.	159(2)	307-14	2014		
39167	23938389	Jiang Y., Sun L., Jiang M., Li K., Song Y., Zhu C.	Production of marker-free and RSV-resistant transgenic rice using a twin T-DNA system and RNAi.	J. Biosci.	38(3)	573-81	2013		
39168	24118770	Sun L., Yang D.L., Kong Y., Chen Y., Li X.Z., Zeng L.J., Li Q., Wang E.T., He Z.H.	Sugar homeostasis mediated by cell wall invertase GRAIN INCOMPLETE FILLING 1 (GIF1) plays a role in pre-existing and induced defence in rice.	Mol. Plant Pathol.	15(2)	161-73	2014		
39169	24030721	Yin Z., Wang J., Wang D., Fan W., Wang S., Ye W.	The MAPKKK gene family in Gossypium raimondii: genome-wide identification, classification and expression analysis.	Int J Mol Sci	14(9)	18740-57	2013		
39170	24056455	Akasaka N., Sakoda H., Hidese R., Ishii Y., Fujiwara S.	An Efficient Method Using Gluconacetobacter europaeus To Reduce an Unfavorable Flavor Compound, Acetoin, in Rice Vinegar Production.	Appl. Environ. Microbiol.	79(23)	7334-42	2013		
39171	24273423	Abe T., Nonoue Y., Ono N., Omoteno M., Kuramata M., Fukuoka S., Yamamoto T., Yano M., Ishikawa S.	Detection of QTLs to reduce cadmium content in rice grains using LAC23/Koshihikari chromosome segment substitution lines.	Breed. Sci.	63(3)	284-291	2013		
39172	24098073	Muhammad S.I., Maznah I., Mahmud R., Zuki A.B., Imam M.U.	Upregulation of genes related to bone formation by gamma-amino butyric acid and gamma-oryzanol in germinated brown rice is via the activation of GABAB-receptors and reduction of serum IL-6 in rats.	Clin Interv Aging	8	1259-71	2013		
39173	24273425	Taguchi-Shiobara F., Ozaki H., Sato H., Maeda H., Kojima Y., Ebitani T., Yano M.	Mapping and validation of QTLs for rice sheath blight resistance.	Breed. Sci.	63(3)	301-308	2013		
39174	24077074	Sasidharan R., Mustroph A., Boonman A., Akman M., Ammerlaan A.M., Breit T., Schranz M.E., Voesenek L.A., van Tienderen PH.	Root transcript profiling of two rorippa species reveals gene clusters associated with extreme submergence tolerance.	Plant Physiol.	163(3)	1277-92	2013		
39175	24089866	Feng H., Jiang N., Huang C., Fang W., Yang W., Chen G., Xiong L., Liu Q.	A hyperspectral imaging system for an accurate prediction of the above-ground biomass of individual rice plants.	Rev Sci Instrum	84(9)	095107	2013		
39176	24061417	Kato Y., Nomura T., Ogita S., Takano M., Hoshino K.	Two new beta-glucosidases from ethanol-fermenting fungus Mucor circinelloides NBRC 4572: enzyme purification, functional characterization, and molecular cloning of the gene.	Appl. Microbiol. Biotechnol.	97(23)	10045-56	2013		
39177	24043853	Yokotani N., Sato Y., Tanabe S., Chujo T., Shimizu T., Okada K., Yamane H., Shimono M., Sugano S., Takatsuji H., Kaku H., Minami E., Nishizawa Y.	WRKY76 is a rice transcriptional repressor playing opposite roles in blast disease resistance and cold stress tolerance.	J. Exp. Bot.	64(16)	5085-97	2013		
39178	24043854	Chu H., Liang W., Li J., Hong F., Wu Y., Wang L., Wang J., Wu P., Liu C., Zhang Q., Xu J., Zhang D.	A CLE-WOX signalling module regulates root meristem maintenance and vascular tissue development in rice.	J. Exp. Bot.	64(17)	5359-69	2013		
39179	24005473	Sahoo R.K., Ansari M.W., Dangar T.K., Mohanty S., Tuteja N.	Phenotypic and molecular characterisation of efficient nitrogen-fixing Azotobacter strains from rice fields for crop improvement.	Protoplasma	251(3)	511-23	2014		
39180	24061553	Fukumoto K., Tsuno T., Taniguchi M., Terada S.	Rice bran extract affects differentiation of mesenchymal stem cells potency into osteogenic cells.	Cytotechnology	65(6)	937-43	2013		
39181	24078111	Fang C., Xu T., Ye C., Huang L., Wang Q., Lin W.	Method for RNA extraction and cDNA library construction from microbes in crop rhizosphere soil.	World J. Microbiol. Biotechnol.	30(2)	783-9	2014		
39182	23849113	Park C.J., Sharma R., Lefebvre B., Canlas P.E., Ronald P.C.	The endoplasmic reticulum-quality control component SDF2 is essential for XA21-mediated immunity in rice.	Plant Sci.	210	53-60	2013	SDF2-2	OsSDF2-2
39183	24013899	Zhang L., Li Z., Dai B., Zhang W., Yuan Y.	Effect of submerged and solid-state fermentation on pigment and citrinin production by Monascus purpureus.	Acta. Biol. Hung.	64(3)	385-94	2013		
39184	24024469	Handakumbura P.P., Matos D.A., Osmont K.S., Harrington M.J., Heo K., Kafle K., Kim S.H., Baskin T.I., Hazen S.P.	Perturbation of Brachypodium distachyon CELLULOSE SYNTHASE A4 or 7 results in abnormal cell walls.	BMC Plant Biol.	13	131	2013		
39185	24086651	Sinha D., Gupta M.K., Patel H.K., Ranjan A., Sonti R.V.	Cell Wall Degrading Enzyme Induced Rice Innate Immune Responses Are Suppressed by the Type 3 Secretion System Effectors xopN, xopQ, xopX and XopZ of Xanthomonas oryzae pv. oryzae.	PLoS ONE	8(9)	e75867	2013		
39186	24039714	Boddy L.G., Bradford K.J., Fischer A.J.	Stratification requirements for seed dormancy alleviation in a wetland weed.	PLoS ONE	8(9)	e71457	2013		
39187	24102419	Lu Y., Li Y., Yang Q., Zhang Z., Chen Y., Zhang S., Peng X.X.	Suppression of glycolate oxidase causes glyoxylate accumulation that inhibits photosynthesis through deactivating Rubisco in rice.	Physiol Plant	150(3)	463-76	2014	GLO5,PSAN,PSAB,_,GLO1	GLO4, OsGLO4, OsGLO5,psaN, OspsaN, PN, OsPN,PsaB, psaB, PsAA2, psaA2,,GLO1, OsGLO1
39188	24043125	Kim D.H., Kim S.H., Kwon S.W., Lee J.K., Hong S.B.	Fungal Diversity of Rice Straw for Meju Fermentation.	J. Microbiol. Biotechnol.	23(12)	1654-63	2013		
39189	24073880	Lee W.S., Rudd J.J., Hammond-Kosack KE., Kanyuka K.K.	Mycosphaerella graminicola LysM effector-mediated stealth pathogenesis subverts recognition through both CERK1 and CEBiP homologues in wheat.	Mol. Plant Microbe Interact.	27(3)	236-43	2014		
39190	24124491	Morozumi Y., Ino R., Ikawa S., Mimida N., Shimizu T., Toki S., Ichikawa H., Shibata T., Kurumizaka H.	Homologous Pairing Activities of Two Rice RAD51 Proteins, RAD51A1 and RAD51A2.	PLoS ONE	8(10)	e75451	2013	RAD51A2,COLD11	OsRad51A2, OsRAD51,OsRAD51A1, RAD51A1, OsCOLD11
39191	24083809	Kuwatsuka Y., Shimizu K., Akiyama Y., Koike Y., Ogawa F., Furue M., Utani A.	Yusho patients show increased serum IL-17, IL-23, IL-1beta, and TNFalpha levels more than 40 years after accidental polychlorinated biphenyl poisoning.	J Immunotoxicol	11(3)	246-9	2014		
39192	24134674	Byeon Y., Lee H.Y., Lee K., Park S., Back K.	Cellular localization and kinetics of the rice melatonin biosynthetic enzymes SNAT and ASMT.	J. Pineal Res.	56(1)	107-14	2014		
39193	24270630	Chang C.W., Cou?ago RM., Williams S.J., Boden M., Kobe B.	The distribution of different classes of nuclear localization signals (NLSs) in diverse organisms and the utilization of the minor NLS-binding site inplantnuclear import factor importin-alpha.	Plant Signal Behav	8(10)	e25976	2013		
39194	24173698	H?ller S., Hajirezaei M.R., von Wir?n N., Frei M.	Ascorbate metabolism in rice genotypes differing in zinc efficiency.	Planta	239(2)	367-79	2014		
39195	24032669	Nazari F., Sulyok M., Yazdanpanah H., Kobarfard F., Krska R.	A survey of mycotoxins in domestic rice in Iran by liquid chromatography tandem mass spectrometry.	Toxicol. Mech. Methods	24(1)	37-41	2014		
39196	24093800	Li Y.F., Wang Y., Tang Y., Kakani V.G., Mahalingam R.	Transcriptome analysis of heat stress response in switchgrass (Panicum virgatum L.).	BMC Plant Biol.	13	153	2013		
39197	24173642	Kim J.K., Natarajan S., Park H., Huynh K.H., Lee S.H., Kim J.G., Ahn Y.J., Kang L.W.	Crystal structure of XoLAP, a leucine aminopeptidase, from Xanthomonas oryzae pv. oryzae.	J. Microbiol.	51(5)	627-32	2013		
39198	24141117	Byeon J.H., Cho J.H.	An efficient method for organic acetylation and use of DL-phosphinothricin as a negative selection agent in argE transgenic rice.	Biochem. Biophys. Res. Commun.	441(1)	243-8	2013		
39199	24140150	Chung H., Choi J., Park S.Y., Jeon J., Lee Y.H.	Two conidiation-related Zn(II)2Cys6 transcription factor genes in the rice blast fungus.	Fungal Genet. Biol.	61	133-41	2013		
39200	24280045	Kumar K., Sinha A.K.	Overexpression of constitutively active mitogen activated protein kinase kinase 6 enhances tolerance to salt stress in rice.	Rice (N Y)	6	25	2013	MKK6	OsMKK6, OsMEK1, MEK1, OsMAPKK6, MAPKK6, OsMPKK6, MPKK6, OsMAP1, MAP1
39201	24102635	Lei Q., Wang L., Tan D.X., Zhao Y., Zheng X.D., Chen H., Li Q.T., Zuo B.X., Kong J.	Identification of genes for melatonin synthetic enzymes in 'Red Fuji' apple (Malus domestica Borkh.cv.Red) and their expression and melatonin production during fruit development.	J. Pineal Res.	55(4)	443-51	2013		
39202	24098112	Badaruddin M., Holcombe L.J., Wilson R.A., Wang Z.Y., Kershaw M.J., Talbot N.J.	Glycogen metabolic genes are involved in trehalose-6-phosphate synthase-mediated regulation of pathogenicity by the rice blast fungus Magnaporthe oryzae.	PLoS Pathog.	9(10)	e1003604	2013		
39203	24090005	Bian Q.Q., Li X.Y., Fang Y.Q., Jia Y.Q., Mu X.D.	Molecular identification of Pomacea canaliculata and P. insularum from rice paddy in different origins in China using mitochondrial adenosine triphosphate subunit 6 gene.	Mitochondrial DNA			2013		
39204	24098411	Ogiso-Tanaka E., Matsubara K., Yamamoto S., Nonoue Y., Wu J., Fujisawa H., Ishikubo H., Tanaka T., Ando T., Matsumoto T., Yano M.	Natural Variation of the RICE FLOWERING LOCUS T 1 Contributes to flowering time Divergence in Rice.	PLoS ONE	8(10)	e75959	2013	RFT1,FTL13,FTL10,FTL9,FTL7,FTL5,FTL12,FTL11,HD6,FTL4,FTL1,HD3A,SE1,HD5,FTL6,FTL8	FT-L 3, OsFTL3, FTL3, FT-L3, RFT, OsRFT1,OsFTL13,OsFTL10,OsFTL9, OsFT-L9, FT-L9,FT-L 7, OsFTL7,FT-L 5, OsFTL5, FT-L5,OsFTL12, FT-L11,OsFTL11,Hd6(t)*, OSCKA2, OsCKA2, CKA2, OsCKA2-1, CKA2-1, Hd6/CK2alpha, CK2alpha,OsFT, osFT, FT-L 4, OsFTL4, FT-L4, FT-1, OsFT-1,FTL, FT-L1, OsFTL1, FTL1,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, OsHd1,  Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,Hd5(t)*, Hd5, qHD5, HAP3H, OsHAP3H, NF-YB, CBF-A, DTH8 , qHD5(t)*, Ghd8, Ghd8/DTH8, Lhd1, NF-YB11, OsNF-YB11, NFYB11, LH8, DTH8/Ghd8, RH8, DTH8/Ghd8/LHD1, CAR8, DTH8/Ghd8/ OsHAP3H, EF8, OsEF8,FT-L 6, OsFTL6, FT-L6,FT-L 8, OsFTL8
39205	24164672	Nishizawa-Yokoi A., Endo M., Osakabe K., Saika H., Toki S.	Precise marker excision system using an animal-derived piggyBac transposon in plants.	Plant J.	77(3)	454-63	2014		
39206	24094741	Zhao Z., Zhang Y., Liu X., Zhang X., Liu S., Yu X., Ren Y., Zheng X., Zhou K., Jiang L., Guo X., Gai Y., Wu C., Zhai H., Wang H., Wan J.	A role for a dioxygenase in auxin metabolism and reproductive development in rice.	Dev. Cell	27(1)	113-22	2013	DAO	OsDAO
39207	24132150	Zhu Y., Zhu G., Guo Q., Zhu Z., Wang C., Liu Z.	A Comparative Proteomic Analysis of Pinellia ternata Leaves Exposed to Heat Stress.	Int J Mol Sci	14(10)	20614-34	2013		
39208	24102500	Sebbar N., Bozzelli J.W., Bockhorn H.	Thermochemistry and Kinetics for 2-butanone-1yl Radical (CH2?C(=O)CH2CH3) Reactions with O2.	J Phys Chem A	118(1)	21-37	2014		
39209	24151204	Hu Z., Yamauchi T., Yang J., Jikumaru Y., Tsuchida-Mayama T., Ichikawa H., Takamure I., Nagamura Y., Tsutsumi N., Yamaguchi S., Kyozuka J., Nakazono M.	Strigolactone and cytokinin act antagonistically in regulating rice mesocotyl elongation in darkness.	Plant Cell Physiol.	55(1)	30-41	2014		
39210	24155879	Yuan X., Zhang S., Sun M., Liu S., Qi B., Li X.	Putative DHHC-Cysteine-Rich Domain S-Acyltransferase in Plants.	PLoS ONE	8(10)	e75985	2013		
39211	24089433	Hirano K., Aya K., Morinaka Y., Nagamatsu S., Sato Y., Antonio B.A., Namiki N., Nagamura Y., Matsuoka M.	Survey of genes involved in rice secondary cell wall formation through a co-expression network.	Plant Cell Physiol.	54(11)	1803-21	2013		
39212	24168061	Sandhu N., Jain S., Kumar A., Mehla B.S., Jain R.	Genetic variation, linkage mapping of QTL and correlation studies for yield, root, and agronomic traits for aerobic adaptation.	BMC Genet.	14(1)	104	2013		
39213	24088323	Yin G., Xu H., Xiao S., Qin Y., Li Y., Yan Y., Hu Y.	The large soybean (Glycine max) WRKY TF family expanded by segmental duplication events and subsequent divergent selection among subgroups.	BMC Plant Biol.	13	148	2013		
39214	24104396	Garg R., Verma M., Agrawal S., Shankar R., Majee M., Jain M.	Deep Transcriptome Sequencing of Wild Halophyte Rice, Porteresia coarctata, Provides Novel Insights into the Salinity and submergence tolerance Factors.	DNA Res.	21(1)	69-84	2014		
39215	24059703	Raghunath P., Lin M.C.	Ab Initio Chemical Kinetics for SiH2 + Si2H6 and SiH3 + Si2H5 Reactions and the Related Unimolecular Decomposition of Si3H8 under a-Si/H CVD Conditions.	J Phys Chem A	117(42)	10811-23	2013		
39216	24130197	Xiao J., Cheng H., Li X., Xiao J., Xu C., Wang S.	Rice WRKY13 Regulates Crosstalk between Abiotic and Biotic Stress Signaling Pathways by Selective Binding to Different cis-Elements.	Plant Physiol.	163(4)	1868-82	2013		
39217	24280004	Zhao X.Q., Wang W.S., Zhang F., Zhang T., Zhao W., Fu B.Y., Li Z.K.	Temporal profiling of primary metabolites under chilling stress and its association with seedling chilling tolerance of rice (Oryza sativa L.).	Rice (N Y)	6	23	2013		
39218	24142111	Kumar K., Mosa K.A., Chhikara S., Musante C., White J.C., Dhankher O.P.	Two rice plasma membrane intrinsic proteins, OsPIP2;4 and OsPIP2;7, are involved in transport and providing tolerance to boron toxicity.	Planta	239(1)	187-98	2014		
39219	24117535	Madan N., Rajkumar T., Sundar Raj N., Farook M.A., Nambi K.S., Abdul Majeed S., Sahul Hameed AS.	Tissue distribution of hepatopancreatic parvo-like virus of shrimp in freshwater rice-field crab, Paratelphusa hydrodomous (Herbst).	J. Fish Dis.	37(11)	969-80	2014		
39220	24096657	Anzawa Y., Nabekura Y., Satoh K., Satoh Y., Ohno S., Watanabe T., Kaneoke M., Kume K., Mizunuma M., Watanabe K., Katsumata K., Hirata D.	Polishing properties of sake rice koshitanrei for high-quality sake brewing.	Biosci. Biotechnol. Biochem.	77(10)	2160-5	2013		
39221	24089437	Dong Z., Jiang C., Chen X., Zhang T., Ding L., Song W., Luo H., Lai J., Chen H., Liu R., Zhang X., Jin W.	Maize LAZY1 Mediates Shoot Gravitropism and Inflorescence Development through Regulating Auxin Transport, Auxin Signaling, and Light Response.	Plant Physiol.	163(3)	1306-22	2013		
39222	24116181	Yan X., Que Y., Wang H., Wang C., Li Y., Yue X., Ma Z., Talbot N.J., Wang Z.	The MET13 Methylenetetrahydrofolate Reductase Gene Is Essential for Infection-Related Morphogenesis in the Rice Blast Fungus Magnaporthe oryzae.	PLoS ONE	8(10)	e76914	2013		
39223	24147765	Narsai R., Devenish J., Castleden I., Narsai K., Xu L., Shou H., Whelan J.	Rice DB: an Oryza Information Portal linking annotation, subcellular location, function, expression, regulation, AND evolutionary information for rice AND Arabidopsis.	Plant J.	76(6)	1057-73	2013		
39224	24113387	Guo J., Li H., Chang J.W., Lei Y., Li S., Chen L.L.	Prediction and characterization of protein-protein interaction network in Xanthomonas oryzae pv. oryzae PXO99(A.)	Res. Microbiol.	164(10)	1035-44	2013		
39225	24099956	Hidayat C., Hastuti P., Wardhani A.K., Nadia L.S.	Method of phorbol ester degradation in Jatropha curcas L. seed cake using rice bran lipase.	J. Biosci. Bioeng.	117(3)	372-4	2014		
39226	24201910	Han P., Gu J.D.	A newly designed degenerate PCR primer based on pmoA gene for detection of nitrite-dependent anaerobic methane-oxidizing bacteria from different ecological niches.	Appl. Microbiol. Biotechnol.	97(23)	10155-62	2013		
39227	24085308	Kurokawa S., Kuroda M., Mejima M., Nakamura R., Takahashi Y., Sagara H., Takeyama N., Satoh S., Kiyono H., Teshima R., Masumura T., Yuki Y.	RNAi-mediated suppression of endogenous storage proteins leads to a change in localization of overexpressed cholera toxin B-subunit and the allergen protein RAG2 in rice seeds.	Plant Cell Rep.	33(1)	75-87	2014		
39228	24130868	Shaik R., Ramakrishna W.	Genes and co-expression modules common to drought and bacterial stress responses in Arabidopsis and rice.	PLoS ONE	8(10)	e77261	2013		
39229	24101203	Zhang Q., Yu H., Zhang F.Z., Shen Z.C.	Expression and purification of recombinant Human serum albumin from selectively terminable transgenic rice.	J Zhejiang Univ Sci B	14(10)	867-74	2013		
39230	24092451	Kupski L., Pagnussatt F.A., Buffon J.G., Furlong E.B.	Endoglucanase and Total Cellulase from Newly Isolated Rhizopus oryzae and Trichoderma reesei: Production, Characterization, and Thermal Stability.	Appl. Biochem. Biotechnol.	172(1)	458-68	2014		
39231	24096420	Studt L., Schmidt F.J., Jahn L., Sieber C.M., Connolly L.R., Niehaus E.M., Freitag M., Humpf H.U., Tudzynski B.	Two Histone Deacetylases, ffhda1 and FfHda2, Are Important for Fusarium fujikuroi Secondary Metabolism and Virulence.	Appl. Environ. Microbiol.	79(24)	7719-34	2013		
39232	24268165	Caverzan A., Bonifacio A., Carvalho F.E., Andrade C.M., Passaia G., Sch?nemann M., Maraschin Fdos S., Martins M.O., Teixeira F.K., Rauber R., Margis R., Silveira J.A., Margis-Pinheiro M.	The knockdown of chloroplastic ascorbate peroxidases reveals its regulatory role in the photosynthesis and protection under photo-oxidative stress in rice.	Plant Sci.	214	74-87	2014		
39233	24092004	Wang J., Wang W., Gu J.D.	Community structure and abundance of ammonia-oxidizing archaea and bacteria after conversion from soybean to rice paddy in albic soils of Northeast China.	Appl. Microbiol. Biotechnol.	98(6)	2765-78	2014		
39234	24085578	Liu W., Zhang D., Tang M., Li D., Zhu Y., Zhu L., Chen C.	This1 is a putative lipase that regulates tillering, plant height, and spikelet fertility in rice.	J. Exp. Bot.	64(14)	4389-402	2013	D10,THIS1,IAA20	d10(d15,d16), d16, d15, dwf9, d10, OsCCD8b, OsCCD8, CCD8, OsD10,OsTHIS1, CHA-1, OsCHA-1,OsIAA20
39236	24142159	Yu Z., Chang M., Wu M., Yang G., Zhou S., Zhuang L.	Pseudomonas oryzae sp. nov. isolated from a paddy soil in South China.	Arch. Microbiol.	195(12)	815-22	2013		
39237	24088728	Yang L., Wang C., Holst-Jensen A., Morisset D., Lin Y., Zhang D.	Characterization of GM events by insert knowledge adapted re-sequencing approaches.	Sci Rep	3	2839	2013		
39238	24225178	Saha J., Chatterjee C., Sengupta A., Gupta K., Gupta B.	Genome-wide analysis and evolutionary study of sucrose non-fermenting 1-related protein kinase 2 (SnRK2) gene family members in Arabidopsis and Oryza.	Comput Biol Chem	49	59-70	2014		
39239	24122707	Hua B., L? Y., Wang J., Wen B., Cao Y., Wang X., Cui Z.	Dynamic Changes in the Composite Microbial System MC1 During and Following its Rapid Degradation of Lignocellulose.	Appl. Biochem. Biotechnol.	172(2)	951-62	2014		
39240	24170341	Wu T., Shen Y., Zheng M., Yang C., Chen Y., Feng Z., Liu X., Liu S., Chen Z., Lei C., Wang J., Jiang L., Wan J.	Gene SGL, encoding a kinesin-like protein with transactivation activity, is involved in grain length and plant height in rice.	Plant Cell Rep.	33(2)	235-44	2014		
39241	24075758	Surendiran G., Goh C., Le K., Zhao Z., Askarian F., Othman R., Nicholson T., Moghadasian P., Wang Y.J., Aliani M., Shen G., Beta T., Moghadasian M.H.	Wild rice (Zizania palustris L.) prevents atherogenesis in LDL receptor knockout mice.	Atherosclerosis	230(2)	284-92	2013		
39242	24154623	Uga Y., Yamamoto E., Kanno N., Kawai S., Mizubayashi T., Fukuoka S.	A major QTL controlling deep rooting on rice chromosome 4.	Sci Rep	3	3040	2013		
39243	24083427	Shinano T., Yoshimura T., Watanabe T., Unno Y., Osaki M., Nanjo Y., Komatsu S.	Effect of phosphorus levels on the protein profiles of secreted protein and root surface protein of rice.	J. Proteome Res.	12(11)	4748-56	2013		
39244	24185036	Gao J., Chen L., Yuan K., Huang H., Yan Z.	Ionic liquid pretreatment to enhance the anaerobic digestion of lignocellulosic biomass.	Bioresour. Technol.	150C	352-358	2013		
39245	24187491	Muhammad S.I., Maznah I., Mahmud R.B., Esmaile M.F., Zuki A.B.	Bone mass density estimation: Archimede's principle versus automatic X-ray histogram and edge detection technique in ovariectomized rats treated with germinated brown rice bioactives.	Clin Interv Aging	8	1421-31	2013		
39246	24123409	Aggarwal M., Burnsed J., Martin L.J., Northington F.J., Zhang J.	Imaging neurodegeneration in the mouse hippocampus after neonatal hypoxia-ischemia using oscillating gradient diffusion MRI.	Magn Reson Med	72(3)	829-40	2014		
39247	24101772	Reguera M., Peleg Z., Abdel-Tawab YM., Tumimbang E., Delatorre C.A., Blumwald E.	Stress-Induced CK Synthesis Increases Drought Tolerance through the Coordinated Regulation of Carbon and Nitrogen Assimilation in Rice.	Plant Physiol.	163(4)	1609-22	2013		
39248	24288473	Panhwar Q.A., Jusop S., Naher U.A., Othman R., Razi M.I.	Application of Potential Phosphate-Solubilizing Bacteria and Organic Acids on Phosphate Solubilization from Phosphate Rock in Aerobic Rice.	ScientificWorldJournal	2013	272409	2013		
39249	24136625	Wan G., Dang Z., Wu G., Parajulee M.N., Ge F., Chen F.	Single and fused trait transgenic Bt rice alter the species-specific responses of non-target planthoppers to elevated CO2 and temperature.	Pest Manag. Sci.	70(5)	734-42	2014		
39250	24158250	Li R., Xia J., Xu Y., Zhao X., Liu Y.G., Chen Y.	Characterization and genetic mapping of a Photoperiod-sensitive dwarf 1 locus in rice (Oryza sativa L.).	Theor. Appl. Genet.	127(1)	241-50	2014	PTD1	OsLTP1.2, OsLtpI.2, OsPTD1, Psd1
39251	24083549	Zhai Y., Zhang J., Sun Z., Dong X., He Y., Kang K., Liu Z., Zhang W.	Proteomic and Transcriptomic Analyses of Fecundity in the Brown Planthopper Nilaparvata lugens (St?l).	J. Proteome Res.	12(11)	5199-212	2013		
39252	24145853	Sama V.S., Rawat N., Sundaram R.M., Himabindu K., Naik B.S., Viraktamath B.C., Bentur J.S.	A putative candidate for the recessive gall midge resistance gene gm3 in rice identified and validated.	Theor. Appl. Genet.	127(1)	113-24	2014		
39253	24098512	Mathioni S.M., Patel N., Riddick B., Sweigard J.A., Czymmek K.J., Caplan J.L., Kunjeti S.G., Kunjeti S., Raman V., Hillman B.I., Kobayashi D.Y., Donofrio N.M.	Transcriptomics of the Rice Blast Fungus Magnaporthe oryzae in Response to the Bacterial Antagonist Lysobacter enzymogenes Reveals Candidate Fungal Defense Response Genes.	PLoS ONE	8(10)	e76487	2013		
39254	24014575	Nishida H., Ishihara D., Ishii M., Kaneko T., Kawahigashi H., Akashi Y., Saisho D., Tanaka K., Handa H., Takeda K., Kato K.	Phytochrome C is a key factor controlling long-day flowering in barley.	Plant Physiol.	163(2)	804-14	2013		
39255	24162153	Zhang H., Duan L., Dai J.S., Zhang C.Q., Li J., Gu M.H., Liu Q.Q., Zhu Y.	Major QTLs reduce the deleterious effects of high temperature on rice amylose content by increasing splicing efficiency of Wx pre-mRNA.	Theor. Appl. Genet.	127(2)	273-82	2014		
39256	24164326	Hwang J.E., Hwang S.G., Kim S.H., Lee K.J., Jang C.S., Kim J.B., Kim S.H., Ha B.K., Ahn J.W., Kang S.Y., Kim D.S.	Transcriptome profiling in response to different types of ionizing radiation and identification of multiple radio marker genes in rice.	Physiol Plant	150(4)	604-19	2014		
39257	24114051	Kiswara G., Lee J.H., Hur Y.J., Cho J.H., Lee J.Y., Kim S.Y., Sohn Y.B., Song Y.C., Nam M.H., Yun B.W., Kim K.M.	Genetic analysis and molecular mapping of low amylose gene du12(t) in rice (Oryza sativa L.).	Theor. Appl. Genet.	127(1)	51-7	2014	DU12	du12(t)
39258	24133650	Sarker P.K., Talukdar S.A., Deb P., Sayem S.A., Mohsina K.	Optimization and partial characterization of culture conditions for the production of alkaline protease from Bacillus licheniformis P003.	Springerplus	2	506	2013		
39259	24161240	Goo Y.M., Kim T.W., Lee M.K., Lee S.W.	Accumulation of PrLeg, a perilla legumin protein in potato tuber results in enhanced level of sulphur-containing amino acids.	C. R. Biol.	336(9)	433-9	2013		
39260	24143239	Cheung S.C., Long X., Liu L., Liu Q., Lan L., Tong P.C., Sun S.S.	Inhibition of Human MCF-7 Breast Cancer Cells and HT-29 Colon Cancer Cells by Rice-Produced Recombinant Human Insulin-Like Growth binding protein-3 (rhIGFBP-3).	PLoS ONE	8(10)	e77516	2013		
39261	24151305	Cantoro R., Crocco C.D., Benech-Arnold RL., Rodr?guez MV.	In vitro binding of Sorghum bicolor transcription factors ABI4 and ABI5 to a conserved region of a GA 2-OXIDASE promoter: possible role of this interaction in the expression of seed dormancy.	J. Exp. Bot.	64(18)	5721-35	2013		
39262	24132771	Song J., Wei X., Shao G., Sheng Z., Chen D., Liu C., Jiao G., Xie L., Tang S., Hu P.	The rice nuclear gene wlp1 encoding a chloroplast ribosome L13 protein is needed for chloroplast development in rice grown under low temperature conditions.	Plant Mol. Biol.	84(3)	301-14	2014	_	cp rpl13, cp RPL13, WLP1, RPL13
39263	24205105	Oh H.Y., Kim M.K., Lee M., Kim Y.O.	Macronutrient composition and sodium intake of diet are associated with risk of metabolic syndrome and hypertension in korean women.	PLoS ONE	8(10)	e78088	2013		
39264	24268168	Yang D.H., Kwak K.J., Kim M.K., Park S.J., Yang K.Y., Kang H.	Expression of Arabidopsis glycine-rich RNA-binding protein AtGRP2 or AtGRP7 improves grain yield of rice (Oryza sativa) under drought stress conditions.	Plant Sci.	214	106-12	2014		
39265	24046061	Schmidt R., Schippers J.H., Mieulet D., Watanabe M., Hoefgen R., Guiderdoni E., Mueller-Roeber B.	SALT-RESPONSIVE ERF1 Is a Negative Regulator of Grain Filling and Gibberellin-Mediated Seedling Establishment in Rice.	Mol Plant	7(2)	404-21	2014		
39266	24131596	Liu D., Li J., Zhao S., Zhang R., Wang M., Miao Y., Shen Y., Shen Q.	Secretome diversity and quantitative analysis of cellulolytic Aspergillus fumigatus Z5 in the presence of different carbon sources.	Biotechnol Biofuels	6(1)	149	2013		
39267	24130823	Balsanelli E., Tuleski T.R., de Baura VA., Yates M.G., Chubatsu L.S., de Oliveira Pedrosa F., de Souza EM., Monteiro R.A.	Maize Root Lectins Mediate the Interaction with Herbaspirillum seropedicae via N-Acetyl Glucosamine Residues of Lipopolysaccharides.	PLoS ONE	8(10)	e77001	2013		
39268	24116562	Lee S.H., Chen W.K., Chin C.H., Huang W.J.	Exploring the dynamics of C/H and C/Cl exchanges in the C(3P) + C2H3Cl reaction.	J Chem Phys	139(13)	134301	2013		
39269	24100330	Tankrathok A., Iglesias-Fern?ndez J., Luang S., Robinson R.C., Kimura A., Rovira C., Hrmova M., Ketudat Cairns JR.	Structural analysis and insights into the glycon specificity of the rice GH1 Os7BGlu26 beta-D-mannosidase.	Acta Crystallogr. D Biol. Crystallogr.	69(Pt 10)	2124-35	2013		
39270	24494239	Jogawat A., Saha S., Bakshi M., Dayaman V., Kumar M., Dua M., Varma A., Oelm?ller R., Tuteja N., Johri A.K.	Piriformospora indica rescues growth diminution of rice seedlings during high salt stress.	Plant Signal Behav	8(10)		2013		
39271	24260743	Shafie N.H., Mohd Esa N., Ithnin H., Md Akim A., Saad N., Pandurangan A.K.	Preventive Inositol Hexaphosphate Extracted from Rice Bran Inhibits Colorectal Cancer through Involvement of Wnt/ beta -catenin and COX-2 Pathways.	Biomed Res Int	2013	681027	2013		
39272	24269347	Zhang J., Wang Y., Zhang L., Zhang R., Liu G., Cheng G.	Understanding changes in cellulose crystalline structure of lignocellulosic biomass during ionic liquid pretreatment by XRD.	Bioresour. Technol.	151	402-5	2014		
39273	24255867	Gopalakrishnan S., Srinivas V., Sree Vidya M., Rathore A.	Plant growth-promoting activities of Streptomyces spp. in sorghum and rice.	Springerplus	2	574	2013		
39274	24146224	Qin J., Scheuring C.F., Wei G., Zhi H., Zhang M., Huang J.J., Zhou X., Galbraith D.W., Zhang H.B.	Identification and characterization of a repertoire of genes differentially expressed in developing top ear shoots between a superior hybrid and its parental inbreds in Zea mays L.	Mol. Genet. Genomics	288(12)	691-705	2013		
39275	24173912	Kouzai Y., Nakajima K., Hayafune M., Ozawa K., Kaku H., Shibuya N., Minami E., Nishizawa Y.	CEBiP is the major chitin oligomer-binding protein in rice and plays a main role in the perception of chitin oligomers.	Plant Mol. Biol.	84(4-5)	519-28	2014		
39276	24174541	Chen J., Hu Q., Zhang Y., Lu C., Kuang H.	P-MITE: a database for plant miniature inverted-repeat transposable elements.	Nucleic Acids Res.	42(Database issue)	D1176-81	2014		
39277	24117971	Samalova M., Meyer A.J., Gurr S.J., Fricker M.D.	Robust anti-oxidant defences in the rice blast fungus Magnaporthe oryzae confer tolerance to the host oxidative burst.	New Phytol.	201(1)	556 573	2014		
39278	24280027	Hu S., Dong G., Xu J., Su Y., Shi Z., Ye W., Li Y., Li G., Zhang B., Hu J., Qian Q., Zeng D., Guo L.	A point mutation in the zinc finger motif of RID1/EHD2/OsId1 protein leads to outstanding yield-related traits in japonica rice variety Wuyunjing 7.	Rice (N Y)	6	24	2013		
39279	23963804	Chen J.G., Egner P.A., Ng D., Jacobson L.P., Munoz A., Zhu Y.R., Qian G., Wu F., Yuan J.M., Groopman J.D., Kensler T.W.	Reduced Aflatoxin Exposure Presages Decline in Liver Cancer Mortality in an Endemic Region of China.	Cancer Prev Res (Phila)	6(10)	1038-45	2013		
39280	23987653	Al-Tam FM., Adam H., Anjos A.D., Lorieux M., Larmande P., Ghesquiere A., Jouannic S., Shahbazkia H.R.	P-TRAP: a Panicle Trait Phenotyping Tool.	BMC Plant Biol.	13(1)	122	2013		
39281	23970084	Bian J.M., Shi H., Li C.J., Zhu C.L., Yu Q.Y., Peng X.S., Fu J.R., He X.P., Chen X.R., Hu L.F., Ouyang L.J., He H.H.	QTL mapping and correlation analysis for 1000-grain weight and percentage of grains with chalkiness in rice.	J. Genet.	92(2)	281-7	2013		
39282	23965973	Kim H.J., Lee J.Y., Yoon U.H., Lim S.H., Kim Y.M.	Effects of reduced prolamin on seed storage protein composition and the nutritional quality of rice.	Int J Mol Sci	14(8)	17073-84	2013		
39283	23990303	Moon H.Y., Van T.L., Cheon S.A., Choo J., Kim J.Y., Kang H.A.	Cell-surface expression of Aspergillus saitoi-derived functional alpha-1,2-mannosidase on Yarrowia lipolytica for glycan remodeling.	J. Microbiol.	51(4)	506-14	2013		
39284	23950663	Roshdy E., Rajaratnam V., Maitra S., Sabry M., Allah A.S., Al-Hendy A.	Treatment of symptomatic uterine fibroids with green tea extract: a pilot randomized controlled clinical study.	Int J Womens Health	5	477-86	2013		
39285	23907258	Wang S., Zhang S., Zhou T., Zeng J., Zhan J.	Design and application of an in vivo reporter assay for Phenylalanine ammonia-lyase.	Appl. Microbiol. Biotechnol.	97(17)	7877-85	2013		
39286	23986463	Tusting L.S., Thwing J., Sinclair D., Fillinger U., Gimnig J., Bonner K.E., Bottomley C., Lindsay S.W.	Mosquito larval source management for controlling malaria.	Cochrane Database Syst Rev	8	CD008923	2013		
39287	23974369	Han P., Li M., Gu J.D.	Biases in community structures of ammonia/ammonium-oxidizing microorganisms caused by insufficient DNA extractions from Baijiang soil revealed by comparative analysis of coastal wetland sediment and rice paddy soil.	Appl. Microbiol. Biotechnol.	97(19)	8741-56	2013		
39288	23939432	Wallstr?m SV., Florez-Sarasa I., Ara?jo WL., Aidemark M., Fern?ndez Fern?ndez M., Fernie A.R., Ribas-Carb? M., Rasmusson A.G.	Suppression of the external mitochondrial NADPH dehydrogenase, NDB1, in Arabidopsis thaliana affects central metabolism and vegetative growth.	Mol Plant	7(2)	356-68	2014		
39289	23984709	Sheikh A.H., Raghuram B., Jalmi S.K., Wankhede D.P., Singh P., Sinha A.K.	Interaction between two rice mitogen activated protein kinases and its possible role in plant defense.	BMC Plant Biol.	13(1)	121	2013		
39290	23975147	Sarkar N.K., Kim Y.K., Grover A.	Coexpression network analysis associated with call of rice seedlings for encountering heat stress.	Plant Mol. Biol.	84(1-2)	125-43	2014		
39291	23979931	Gong X., Jiang Q., Xu J., Zhang J., Teng S., Lin D., Dong Y.	Disruption of the Rice plastid ribosomal protein S20 Leads to Chloroplast Developmental Defects and Seedling Lethality.	G3 (Bethesda)	3(10)	1769-77	2013		
39292	23934749	Zhu G., Koszelak-Rosenblum M., Malkowski M.G.	Crystal Structures of alpha-Dioxygenase from Oryza sativa: Insights into Substrate Binding and Activation by Hydrogen Peroxide.	Protein Sci.	22(10)	1432-8	2013	PIOX	OsPIOX, RalphaO, alpha-DOX, OsDOX, DOX, alpha-DOX2, Osalpha-DOX2
39293	23914840	Seo J., Kim S.J., Shin S.K.	Coupled Unimolecular Dissociation Kinetics of Bromotoluene Radical Cations.	J Phys Chem A	117(46)	11924-32	2013		
39294	23975246	Yundaeng C., Somta P., Tangphatsornruang S., Wongpornchai S., Srinives P.	Gene discovery and functional marker development for fragrance in sorghum (Sorghum bicolor (L.) Moench).	Theor. Appl. Genet.	126(11)	2897-906	2013		
39295	23990797	Liu L., Shang-Guan K., Zhang B., Liu X., Yan M., Zhang L., Shi Y., Zhang M., Qian Q., Li J., Zhou Y.	Brittle Culm1, a COBRA-like protein, Functions in Cellulose Assembly through Binding Cellulose Microfibrils.	PLoS Genet.	9(8)	e1003704	2013		
39296	23954326	Zhang K., Niu S., Di D., Shi L., Liu D., Cao X., Miao H., Wang X., Han C., Yu J., Li D., Zhang Y.	Selection of reference genes for gene expression studies in virus-infected monocots using quantitative real-time PCR.	J. Biotechnol.	168(1)	7-14	2013		
39297	23933238	Liu S., Dong Y., Li Y., Bao L., Liu H., Li H.	Chemical constituents from the rice fermented with the edible mushroom Pleurotus eryngii and their quinone oxidoreductase 1 inducing effect.	Fitoterapia	91	9-14	2013		
39298	23951162	Xiao Y., Xia W., Yang Y., Mason A.S., Lei X., Ma Z.	Characterization and Evolution of Conserved MicroRNA through Duplication Events in Date Palm (Phoenix dactylifera).	PLoS ONE	8(8)	e71435	2013		
39299	23940254	Werner A.K., Medina-Escobar N., Zulawski M., Sparkes I.A., Cao F.Q., Witte C.P.	The ureide degrading reactions of purine ring catabolism employ four amino- and amidohydrolases in Arabidopsis and soybean.	Plant Physiol.	163(2)	672-81	2013		
39300	23955173	Qi L.L., Wu J.J., Friebe B., Qian C., Gu Y.Q., Fu D.L., Gill B.S.	Sequence organization and evolutionary dynamics of Brachypodium-specific centromere retrotransposons.	Chromosome Res.	21(5)	507-21	2013		
39301	23974358	Tuteja R., Tuteja N.	Analysis of DNA repair helicase UvrD from Arabidopsis thaliana and Oryza sativa.	Plant Physiol. Biochem.	71C	254-260	2013	UVRD	OsUvrD, UvrD
39302	23971515	Alberton D., M?ller-Santos M., Brusamarello-Santos LC., Valdameri G., Cordeiro F.A., Yates M.G., Pedrosa F.D., de Souza EM.	Comparative proteomics analysis of the rice roots colonized by Herbaspirillum seropedicae strain SmR1 reveals induction of the methionine recycling in the plant host.	J. Proteome Res.	12(11)	4757-68	2013		
39303	23973431	Mirza M.A., Capozzi L., Xu Y., McCullough L.D., Liu F.	Knockout of vascular early response gene worsens chronic stroke outcomes in neonatal mice.	Brain Res. Bull.	98	111-21	2013		
39304	23952103	Lu L., Shao D., Qiu X., Sun L., Yan W., Zhou X., Yang L., He Y., Yu S., Xing Y.	Natural variation and artificial selection in four genes determine grain shape in rice.	New Phytol.	200(4)	1269-80	2013		
39305	23905647	Wang W., Xia H., Yang X., Xu T., Si H.J., Cai X.X., Wang F., Su J., Snow A.A., Lu B.R.	A novel 5-enolpyruvoylshikimate-3-phosphate (EPSP) synthase transgene for glyphosate resistance stimulates growth and fecundity in weedy rice (Oryza sativa) without herbicide.	New Phytol.	202(2)	679-88	2014		
39306	23977227	Bai H., Euring D., Volmer K., Janz D., Polle A.	The Nitrate Transporter (NRT) Gene Family in Poplar.	PLoS ONE	8(8)	e72126	2013		
39307	23917116	Debnath T., Park S.R., Kim da H., Jo J.E., Lim B.O.	Anti-Oxidant and Anti-Inflammatory Activities of Inonotus obliquus and Germinated Brown Rice Extracts.	Molecules	18(8)	9293-304	2013		
39308	23935502	Ramanujam R., Calvert M.E., Selvaraj P., Naqvi N.I.	The Late Endosomal HOPS Complex Anchors Active G-protein Signaling Essential for Pathogenesis in Magnaporthe oryzae.	PLoS Pathog.	9(8)	e1003527	2013		
39309	23943138	Chen B., Zhang A., Lu Q., Kuang T., Lu C., Wen X.	Characterization of photosystem I in rice (Oryza sativa L.) seedlings upon exposure to random positioning machine.	Photosyn. Res.	116(1)	93-105	2013		
39310	23759099	Ogata T., Kida Y., Tochigi M., Matsushita Y.	Analysis of the cell death-inducing ability of the ethylene response factors in group VIII of the AP2/ERF family.	Plant Sci.	209	12-23	2013		
39311	23951075	Zeng J., Zhang M., Sun X.	Molecular hydrogen is involved in phytohormone signaling and stress responses in plants.	PLoS ONE	8(8)	e71038	2013		
39312	23956243	Kawakatsu T., Kawahara Y., Itoh T., Takaiwa F.	A Whole-Genome Analysis of a Transgenic Rice Seed-Based Edible Vaccine Against Cedar pollen Allergy.	DNA Res.	20(6)	623-31	2013		
39313	23965250	Wang Y., Li P., Majkova Z., Bever C.R., Kim H.J., Zhang Q., Dechant J.E., Gee S.J., Hammock B.D.	Isolation of Alpaca Anti-Idiotypic Heavy-Chain Single-Domain Antibody for the Aflatoxin Immunoassay.	Anal. Chem.	85(17)	8298-303	2013		
39314	23975886	Suzuki K., Ohmori Y., Nagao M.	Accumulation of nitrate and nitrite in chilled leaves of rice seedlings is induced by high root temperature.	Plant Cell Physiol.	54(11)	1769-79	2013		
39315	23973864	Taniguchi M., Ikeda A., Nakamichi S.I., Ishiyama Y., Saitoh E., Kato T., Ochiai A., Tanaka T.	Antimicrobial activity and mechanism of action of a novel cationic alpha-helical octadecapeptide derived from heat shock protein 70 of rice.	Peptides	48	147-55	2013		
39316	23982951	Taniguchi M., Takahashi N., Takayanagi T., Ikeda A., Ishiyama Y., Saitoh E., Kato T., Ochiai A., Tanaka T.	Effect of substituting arginine and lysine with alanine on antimicrobial activity and the mechanism of action of a cationic dodecapeptide (CL(14-25)), a partial sequence of cyanate lyase from rice.	Biopolymers	102(1)	58-68	2014		
39317	23951288	Wang M., Yuan D., Gao W., Li Y., Tan J., Zhang X.	A Comparative Genome Analysis of PME and PMEI Families Reveals the Evolution of Pectin Metabolism in Plant Cell Walls.	PLoS ONE	8(8)	e72082	2013		
39318	23926950	Li B., Liu H., Zhang Y., Kang T., Zhang L., Tong J., Xiao L., Zhang H.	Constitutive expression of cell wall invertase genes increases grain yield and starch content in maize.	Plant Biotechnol. J.	11(9)	1080-91	2013		
39319	23986771	Sharma R., Cao P., Jung K.H., Sharma M.K., Ronald P.C.	Construction of a rice glycoside hydrolase phylogenomic database and identification of targets for biofuel research.	Front Plant Sci	4	330	2013		
39320	23963074	Qiu X.Q., Tong C.Y., Zhong Z.Q., Wang W.Q., Zuo Y.W., Huang Y., Zhang L., Zhang X.L., Zhang H.X., Li R.Q., Wang J., Chen H., Li Y.Y., Wu G., Wang H.	An engineered multidomain fungicidal peptide against plant fungal pathogens.	Sheng Li Xue Bao	65(4)	417-432	2013		
39321	23925294	Tokuhara D., Alvarez B., Mejima M., Hiroiwa T., Takahashi Y., Kurokawa S., Kuroda M., Oyama M., Kozuka-Hata H., Nochi T., Sagara H., Aladin F., Marcotte H., Frenken L.G., Iturriza-G?mara M., Kiyono H., Hammarstr?m L., Yuki Y.	Rice-based oral antibody fragment prophylaxis and therapy against rotavirus infection.	J. Clin. Invest.	123(9)	3829-38	2013		
39322	23943779	Zhang Y., Gao P., Xing Z., Jin S., Chen Z., Liu L., Constantino N., Wang X., Shi W., Yuan J.S., Dai S.Y.	Application of an Improved Proteomics Method for Abundant Protein Cleanup: Molecular and Genomic Mechanisms Study in Plant Defense.	Mol. Cell Proteomics	12(11)	3431-42	2013		
39323	23951364	Xiong Z.Q., Tu X.R., Wei S.J., Huang L., Li X.H., Lu H., Tu G.Q.	The Mechanism of Antifungal Action of a New Polyene Macrolide Antibiotic Antifungalmycin 702 from Streptomyces padanus JAU4234 on the Rice Sheath Blight Pathogen Rhizoctonia solani.	PLoS ONE	8(8)	e73884	2013		
39324	23943011	Li L., Huang Q., Zhang S., Zhao S.	Effect of Enhanced UV-B Radiation and Low-Energy N(+) Ion Beam Radiation on the Response of Photosynthesis, Antioxidant Enzymes, and Lipid Peroxidation in Rice (Oryza sativa) Seedlings.	Appl. Biochem. Biotechnol.	171(4)	1072-83	2013		
39325	23945310	Li W., Wu C., Hu G., Xing L., Qian W., Si H., Sun Z., Wang X., Fu Y., Liu W.	Characterization and Fine Mapping of a Novel Rice Narrow Leaf Mutant nal9.	J Integr Plant Biol	55(11)	1016-25	2013	VYL	OsClpP6, ClpP6, CLP6, NAL9, NAL9/VYL
39326	23918958	Madsen C.K., Dionisio G., Holme I.B., Holm P.B., Brinch-Pedersen H.	High mature grain phytase activity in the Triticeae has evolved by duplication followed by neofunctionalization of the purple acid phosphatase phytase (PAPhy) gene.	J. Exp. Bot.	64(11)	3111-23	2013		
39327	23956122	Xie K., Yang Y.	RNA-guided Genome Editing in Plants Using A CRISPR-Cas System.	Mol Plant	6(6)	1975-83	2013		
39328	23929733	Tirol-Padre A., Rai M., Gathala M., Sharma S., Kumar V., Sharma P.C., Sharma D.K., Wassmann R., Ladha J.	Assessing the performance of the photo-acoustic infrared gas monitor for measuring CO2 , N2 O and CH4 fluxes in two major cereal rotations.	Glob Chang Biol	20(1)	287-99	2014		
39329	23971749	Miceli Sopo S., Greco M., Monaco S., Tripodi S., Calvani M.	Food protein-induced enterocolitis syndrome, from practice to theory.	Expert Rev Clin Immunol	9(8)	707-15	2013		
39330	23857358	Yamaguchi K., Yamada K., Kawasaki T.	Receptor-like cytoplasmic kinases are pivotal components in pattern recognition receptor-mediated signaling in plant immunity.	Plant Signal Behav	8(10)		2013		
39331	23828545	Rusconi F., Simeoni F., Francia P., Cominelli E., Conti L., Riboni M., Simoni L., Martin C.R., Tonelli C., Galbiati M.	The Arabidopsis thaliana MYB60 promoter provides a tool for the spatio-temporal control of gene expression in stomatal guard cells.	J. Exp. Bot.	64(11)	3361-71	2013		
39332	23250723	Kim T.G., Kim M.Y., Huy N.X., Kim S.H., Yang M.S.	M cell-targeting ligand and consensus dengue virus envelope protein domain III fusion protein production in transgenic rice calli.	Mol. Biotechnol.	54(3)	880-7	2013		
39333	23628887	Lin J., Xu Y., Brookes P.C., He Y., Xu J.	Spatial and temporal variations in pentachlorophenol dissipation at the aerobic--anaerobic interfaces of flooded paddy soils.	Environ. Pollut.	178	433-40	2013		
39334	23847545	Adeniran I., Hancox J.C., Zhang H.	In silico investigation of the short QT syndrome, using human ventricle models incorporating electromechanical coupling.	Front Physiol	4	166	2013		
39335	23832522	Thounaojam T.C., Panda P., Choudhury S., Patra H.K., Panda S.K.	Zinc ameliorates copper-induced oxidative stress in developing rice (Oryza sativa L.) seedlings.	Protoplasma	251(1)	61-9	2014		
39336	23846670	Du H., Wu N., Chang Y., Li X., Xiao J., Xiong L.	Carotenoid deficiency impairs ABA and IAA biosynthesis and differentially affects drought and cold tolerance in rice.	Plant Mol. Biol.	83(4-5)	475-88	2013		
39337	23916816	Guillodo Y., Simon T., Le Goff A., Saraux A.	Interest of rehabilitation in healing and preventing recurrence of ankle sprains.	Ann Phys Rehabil Med	56(7-8)	503-14	2013		
39338	23873414	Heinnickel M.L., Grossman A.R.	The GreenCut: re-evaluation of physiological role of previously studied proteins and potential novel protein functions.	Photosyn. Res.	116(2-3)	427-36	2013		
39339	23936103	Kurtoglu K.Y., Kantar M., Lucas S.J., Budak H.	Unique and Conserved MicroRNAs in Wheat Chromosome 5D Revealed by Next-Generation Sequencing.	PLoS ONE	8(7)	e69801	2013		
39340	23816039	Becker D.J., French B., Morris P.B., Silvent E., Gordon R.Y.	Phytosterols, red yeast rice, and lifestyle changes instead of statins: a randomized, double-blinded, placebo-controlled trial.	Am. Heart J.	166(1)	187-96	2013		
39341	23871874	Choi O., Lee Y., Han I., Kim H., Goo E., Kim J., Hwang I.	A simple and sensitive biosensor strain for detecting toxoflavin using beta-galactosidase activity.	Biosens Bioelectron	50C	256-261	2013		
39342	23873186	Li J., Endo T.R., Saito M., Ishikawa G., Nakamura T., Nasuda S.	Homoeologous relationship of rye chromosome arms as detected with wheat PLUG markers.	Chromosoma	122(6)	555-64	2013		
39343	23857260	Kong W., Zhang C., Liu F., Nie P., He Y.	Rice seed cultivar identification using near-infrared hyperspectral imaging and multivariate data analysis.	Sensors (Basel)	13(7)	8916-27	2013		
39344	23827132	Choi W.H., Gwon S.Y., Ahn J., Jung C.H., Ha T.Y.	Cooked rice prevents hyperlipidemia in hamsters fed a high-fat/cholesterol diet by the regulation of the expression of hepatic genes involved in lipid metabolism.	Nutr Res	33(7)	572-9	2013		
39345	23886623	Tseng I.C., Hong C.Y., Yu S.M., Ho T.H.	Abscisic Acid- and stress-induced highly proline-rich glycoproteins regulate root growth in rice.	Plant Physiol.	163(1)	118-34	2013	_,_,_,_	OsRePRP1.2, RePRP1.2,OsRePRP2.1, RePRP2.1,OsPRP, OsPRP1, PRP1, OsRePRP1.1, RePRP1.1,OsRePRP2.2, RePRP2.2
39346	23987811	Tuncel A., Okita T.W.	Improving starch yield in cereals by over-expression of ADPglucose pyrophosphorylase: Expectations and unanticipated outcomes.	Plant Sci.	211	52-60	2013		
39347	23846215	Rahman M., Haegeman A., Rahman B.M., Gheysen G.	Molecular cloning and expression analysis of novel putative effector genes from Meloidogyne graminicola.	J. Appl. Genet.	54(4)	493	2013		
39348	23841539	Xu L., Law S.R., Murcha M.W., Whelan J., Carrie C.	The dual targeting ability of type II NAD(P)H dehydrogenases arose early in land plant evolution.	BMC Plant Biol.	13	100	2013		
39349	23902261	Rebollar A., L?pez-Garc?a B.	PAF104, a synthetic peptide to control the rice blast disease by blocking the appressorium formation in Magnaporthe oryzae.	Mol. Plant Microbe Interact.	26(12)	1407-16	2013		
39350	23838485	Li B., Shi J.B., Wang X., Meng M., Huang L., Qi X.L., He B., Ye Z.H.	Variations and constancy of mercury and methylmercury accumulation in rice grown at contaminated paddy field sites in three Provinces of China.	Environ. Pollut.	181	91-7	2013		
39351	23839078	Jiang H., Wu Q., Jin J., Sheng L., Yan H., Cheng B., Zhu S.	Genome-wide identification and expression profiling of ankyrin-repeat gene family in maize.	Dev. Genes Evol.	223(5)	303-18	2013		
39352	23818197	Thakur S., Gupta Y.K., Singh P.K., Rathour R., Variar M., Prashanthi S.K., Singh A.K., Singh U.D., Chand D., Rana J.C., Singh N.K., Sharma T.R.	Molecular diversity in rice blast resistance gene Pi-ta makes it highly effective against dynamic population of Magnaporthe oryzae.	Funct. Integr. Genomics	13(3)	309-22	2013		
39353	23894667	Rustgi S., Shafqat M.N., Kumar N., Baenziger P.S., Ali M.L., Dweikat I., Campbell B.T., Gill K.S.	Genetic Dissection of Yield and Its Component Traits Using High-Density Composite Map of Wheat Chromosome 3A: Bridging Gaps between QTLs and Underlying Genes.	PLoS ONE	8(7)	e70526	2013		
39354	23888157	Chen H., Zheng L., Jia D., Zhang P., Chen Q., Liu Q., Wei T.	Rice gall dwarf virus exploits tubules to facilitate viral spread among cultured insect vector cells derived from leafhopper Recilia dorsalis.	Front Microbiol	4	206	2013		
39355	23835917	Xiong F., Liu J., Jiang J., Zhong R., He L., Han Z., Li Z., Tang X., Tang R.	Molecular Profiling of Genetic Variability in Domesticated Groundnut (Arachis hypogaea L.) Based on ISJ, URP, and DAMD Markers.	Biochem. Genet.	51(11-12)	889-900	2013		
39356	23847632	Ricachenevsky F.K., Menguer P.K., Sperotto R.A.	kNACking on heaven's door: how important are NAC transcription factors for leaf senescence and Fe/Zn remobilization to seeds?	Front Plant Sci	4	226	2013		
39357	23852165	Shan T., Sun W., Wang X., Fu X., Sun W., Zhou L.	Purification of ustiloxins a and B from rice false smut balls by macroporous resins.	Molecules	18(7)	8181-99	2013		
39358	23883648	Blagoev K.B., Shukla K., Levine H.	We need theoretical physics approaches to study living systems.	Phys Biol	10(4)	040201	2013		
39359	23887491	Huei Kao C.	Role of rice heme oxygenase in lateral root formation.	Plant Signal Behav	8(10)		2013		
39360	23842755	Khan A.L., Waqas M., Khan A.R., Hussain J., Kang S.M., Gilani S.A., Hamayun M., Shin J.H., Kamran M., Al-Harrasi A., Yun B.W., Adnan M., Lee I.J.	Fungal endophyte Penicillium janthinellum LK5 improves growth of ABA-deficient tomato under salinity.	World J. Microbiol. Biotechnol.	29(11)	2133-44	2013		
39361	23908658	Studholme D.J., Harris B., Le Cocq K., Winsbury R., Perera V., Ryder L., Ward J.L., Beale M.H., Thornton C.R., Grant M.	Investigating the beneficial traits of Trichoderma hamatum GD12 for sustainable agriculture-insights from genomics.	Front Plant Sci	4	258	2013		
39362	23902579	Li H., Jiang L., Youn J.H., Sun W., Cheng Z., Jin T., Ma X., Guo X., Wang J., Zhang X., Wu F., Wu C., Kim S.K., Wan J.	A comprehensive genetic study reveals a crucial role of CYP90D2/D2 in regulating plant architecture in rice (Oryza sativa).	New Phytol.	200(4)	1076-88	2013		
39363	23832334	Nakaya M., Shojo A., Hirai H., Matsumoto K., Kitamura S.	Hypolipidemic Effects of Starch and gamma-Oryzanol from wx/ae Double-Mutant Rice on BALB/c.KOR-Apoe(shl) Mice.	Biosci. Biotechnol. Biochem.	77(7)	1435-40	2013		
39364	23866314	Verhoeven V., Lopez Hartmann M., Remmen R., Wens J., Apers S., Van Royen P.	Red yeast rice lowers cholesterol in physicians - a double blind, placebo controlled randomized trial.	BMC Complement Altern Med	13(1)	178	2013		
39365	23827162	Hagl S., Kocher A., Schiborr C., Eckert S.H., Ciobanu I., Birringer M., El-Askary H., Helal A., Khayyal M.T., Frank J., Muller W.E., Eckert G.P.	Rice bran extract protects from mitochondrial dysfunction in guinea pig brains.	Pharmacol. Res.	76C	17-27	2013		
39366	23889895	Shao F., Lu S.	Genome-wide identification, molecular cloning, expression profiling and posttranscriptional regulation analysis of the Argonaute gene family in Salvia miltiorrhiza, an emerging model medicinal plant.	BMC Genomics	14	512	2013		
39367	23865888	Hardoim P.R., Nazir R., Sessitsch A., Elhottov? D., Korenblum E., van Overbeek LS., van Elsas JD.	The new species Enterobacter oryziphilus sp. nov. and Enterobacter oryzendophyticus sp. nov. are key inhabitants of the endosphere of rice.	BMC Microbiol.	13	164	2013		
39368	23888162	Miro B., Ismail A.M.	Tolerance of anaerobic conditions caused by flooding during germination and early growth in rice (Oryza sativa L.).	Front Plant Sci	4	269	2013		
39369	23828614	Lyu J., Zhang S., Dong Y., He W., Zhang J., Deng X., Zhang Y., Li X., Li B., Huang W., Wan W., Yu Y., Li Q., Li J., Liu X., Wang B., Tao D., Zhang G., Wang J., Xu X., Hu F., Wang W.	Analysis of elite variety tag SNPs reveals an important allele in upland rice.	Nat Commun	4	2138	2013		
39370	23952748	Byeon Y., Lee K., Park Y.I., Park S., Back K.	Molecular cloning and functional analysis of Serotonin N-acetyltransferase from the cyanobacterium Synechocystis sp. PCC 6803.	J. Pineal Res.	55(4)	371-6	2013		
39371	23844166	Ali N., Paul S., Gayen D., Sarkar S.N., Datta K., Datta S.K.	Development of Low Phytate Rice by RNAi Mediated Seed-Specific Silencing of Inositol 1,3,4,5,6-Pentakisphosphate 2-Kinase Gene (IPK1).	PLoS ONE	8(7)	e68161	2013		
39372	23836309	Frederiksen B., Kroehl M., Lamb M.M., Seifert J., Barriga K., Eisenbarth G.S., Rewers M., Norris J.M.	Infant Exposures and Development of Type 1 Diabetes Mellitus: The Diabetes Autoimmunity Study in the Young (DAISY).	JAMA Pediatr	167(9)	808-15	2013		
39373	23832371	Shimizu T., Miyamoto K., Miyamoto K., Minami E., Nishizawa Y., Iino M., Nojiri H., Yamane H., Okada K.	OsJAR1 Contributes Mainly to Biosynthesis of the Stress-Induced Jasmonoyl-Isoleucine Involved in Defense Responses in Rice.	Biosci. Biotechnol. Biochem.	77(7)	1556-64	2013	TIFY11C,BHLH6,TIFY11B,JAR1,TIFY10A,TIFY11A	OsJAZ2, JAZ2, OsJAZ 11, OsJAZ11, Os-JAZ11, JAZ11, OsTIFY11c, OsJAZ1, JAZ1,OsbHLH006, bHLH006, OsbHLH6, bHLH6, RERJ1, OsRERJ1, bHLH35,OsJAZ4, JAZ4, OsJAZ 10, OsJAZ10, JAZ10, OsTIFY11b,OsJAR1, OsGH3.5, GH3.5, OsGH3-5, GH3-5,OsJAZ5, JAZ5, JAZ6, OsJAZ6, OsTIFY10A,OsJAZ3, JAZ3, OsJAZ 9, OsJAZ9, Os-JAZ9, JAZ9, OsTIFY11a, OsJAZ6, JAZ6
39374	23871145	Ji S.H., Gururani M.A., Chun S.C.	Isolation and characterization of plant growth promoting endophytic diazotrophic bacteria from Korean rice cultivars.	Microbiol. Res.	169(1)	83-98	2013		
39375	23845039	Gagat P., Body? A., Mackiewicz P.	How protein targeting to primary plastids via the endomembrane system could have evolved? A new hypothesis based on phylogenetic studies.	Biol. Direct	8	18	2013		
39376	23583672	Yeo M.K., Nam D.H.	Influence of different types of nanomaterials on their bioaccumulation in a paddy microcosm: a comparison of TiO2 nanoparticles and nanotubes.	Environ. Pollut.	178	166-72	2013		
39377	23727802	Lee S.S., Lee J.H., Lee I.	Strain Improvement by Overexpression of the laeA Gene in Monascus pilosus for the Production of Monascus-Fermented Rice.	J. Microbiol. Biotechnol.	23(7)	959-65	2013		
39378	23808777	Hosseinpour-Niazi S., Sohrab G., Asghari G., Mirmiran P., Moslehi N., Azizi F.	Dietary glycemic index, glycemic load, and cardiovascular disease risk factors: Tehran Lipid and Glucose Study.	Arch Iran Med	16(7)	401-7	2013		
39379	23824139	Wang Z., Feng J., Pang M., Pan S., Zhang H.	Multicolor and bright white upconversion luminescence from rice-shaped lanthanide doped BiPO4 submicron particles.	Dalton Trans	42(34)	12101-8	2013		
39380	23879865	Streubel J., Pesce C., Hutin M., Koebnik R., Boch J., Szurek B.	Five phylogenetically close rice SWEET genes confer TAL effector-mediated susceptibility to Xanthomonas oryzae pv. oryzae.	New Phytol.	200(3)	808-19	2013		
39381	23832352	Ishii A., Kumasaka M., Nagashima Y., Nakajima Y., Kuramochi K., Sugawara F., Narukawa M., Kamakura T.	A eukaryotic molecular target candidate of roxithromycin: fungal differentiation as a sensitive drug target analysis system.	Biosci. Biotechnol. Biochem.	77(7)	1539-47	2013		
39382	23867599	Su H., Zhang S., Yuan X., Chen C., Wang X.F., Hao Y.J.	Genome-wide analysis and identification of stress-responsive genes of the NAM-ATAF1,2-CUC2 transcription factor family in apple.	Plant Physiol. Biochem.	71C	11-21	2013		
39383	23899096	Muhammad S.I., Ismail M., Mahmud R.B., Salisu A.M., Zakaria Z.A.	Germinated brown rice and its bioactives modulate the activity of uterine cells in oophorectomised rats as evidenced by gross cytohistological and immunohistochemical changes.	BMC Complement Altern Med	13(1)	198	2013		
39384	23775595	Yang W., Gao M., Yin X., Liu J., Xu Y., Zeng L., Li Q., Zhang S., Wang J., Zhang X., He Z.	Control of Rice Embryo Development, shoot apical meristem Maintenance, and grain yield by a Novel Cytochrome P450.	Mol Plant	6(6)	1945-60	2013		
39385	23893901	Wang J., Xie Z., Gao J., Liu Y., Wang W., Huang L., Wang J.	Molecular cloning and characterization of a ryanodine receptor gene in brown planthopper (BPH), Nilaparvata?lugens (St?l).	Pest Manag. Sci.	70(5)	790-7	2014		
39386	23845012	Dadacz-Narloch B., Kimura S., Kurusu T., Farmer E.E., Becker D., Kuchitsu K., Hedrich R.	On the cellular site of two-pore channel TPC1 action in the Poaceae.	New Phytol.	200(3)	663-74	2013		
39387	23648762	Payormhorm J., Kangvansaichol K., Reubroycharoen P., Kuchonthara P., Hinchiranan N.	Pt/Al?O?-catalytic deoxygenation for upgrading of Leucaena leucocephala-pyrolysis oil.	Bioresour. Technol.	139	128-35	2013		
39388	23900904	Zhuang Z.H., Que S.J., Gao Y.M., Yuan J., Ye Z., Du M., Lin G.M., Liu L.C., Wang S.H.	Artificial antigen synthesis and the development of polyclonal antibody-based immunoassay for citreoviridin determination.	World J. Microbiol. Biotechnol.	30(1)	343-9	2014		
39389	23865514	Zhang Y., Chao K., Sun J., Su Z., Pan X., Zhang J., Wang R.	Theoretical study on the gas phase reaction of allyl alcohol with hydroxyl radical.	J Phys Chem A	117(30)	6629-40	2013		
39390	23866310	Azmi N.H., Ismail N., Imam M.U., Ismail M.	Ethyl acetate extract of germinated brown rice attenuates hydrogen peroxide-induced oxidative stress in human SH-SY5Y neuroblastoma cells: role of anti-apoptotic, pro-survival and antioxidant genes.	BMC Complement Altern Med	13	177	2013		
39391	23892148	Chen Y., Zhai S.R., Liu N., Song Y., An Q.D., Song X.W.	Dye removal of activated carbons prepared from NaOH-pretreated rice husks by low-temperature solution-processed carbonization and H3PO4 activation.	Bioresour. Technol.	144	401-9	2013		
39392	23883359	Cheng Y., An S., Liu X., Chang C., Zou Y., Huang L., Zhong J., Liu Q., Jiang Z., Zhou J., Zhang L.H.	A Non-ribosomal Peptide Synthase Containing A Stand-alone Condensation Domain Is Essential for Phytotoxin Zeamine Biosynthesis.	Mol. Plant Microbe Interact.	26(11)	1294-301	2013		
39393	23889160	Byeon Y., Park S., Kim Y.S., Back K.	Microarray analysis of genes differentially expressed in melatonin-rich transgenic rice expressing a sheep serotonin N-acetyltransferase.	J. Pineal Res.	55(4)	357-63	2013		
39394	23874922	Landraud P., Chuzeville S., Billon-Grande G., Poussereau N., Bruel C.	Adaptation to pH and Role of PacC in the Rice Blast Fungus Magnaporthe oryzae.	PLoS ONE	8(7)	e69236	2013		
39395	23890351	Cicero A.F., Derosa G., Parini A., Maffioli P., D'Addato S., Reggi A., Giovannini M., Borghi C.	Red yeast rice improves lipid pattern, high-sensitivity C-reactive protein, and vascular remodeling parameters in moderately hypercholesterolemic Italian subjects.	Nutr Res	33(8)	622-8	2013		
39396	23830033	Kahar P., Taku K., Tanaka S.	Multiple effects of swelling by sodium bicarbonate after delignification on enzymatic saccharification of rice straw.	J. Biosci. Bioeng.	116(6)	725-33	2013		
39397	23800416	Rothenberg S.E., Yu X., Zhang Y.	Prenatal methylmercury exposure through maternal rice ingestion: insights from a feasibility pilot in Guizhou Province, China.	Environ. Pollut.	180	291-8	2013		
39398	23762267	Wang J., Chen L., Wang Y., Zhang J., Liang Y., Xu D.	A computational systems biology study for understanding salt tolerance mechanism in rice.	PLoS ONE	8(6)	e64929	2013		
39399	23811121	Lee M.H., Cho E.J., Wi S.G., Bae H., Kim J.E., Cho J.Y., Lee S., Kim J.H., Chung B.Y.	Divergences in morphological changes and antioxidant responses in salt-tolerant and salt-sensitive rice seedlings after salt stress.	Plant Physiol. Biochem.	70	325-35	2013		
39400	23783412	Wu T.M., Lin W.R., Kao Y.T., Hsu Y.T., Yeh C.H., Hong C.Y., Kao C.H.	Identification and characterization of a novel chloroplast/mitochondria co-localized glutathione reductase 3 involved in salt stress response in rice.	Plant Mol. Biol.	83(4-5)	379-90	2013	GR2,GR1,GR3	OsGR2, RGRC2, OsGR, OsGR3, OsRGRC2,OsGR1, OsGR2,OsGR3
39401	23748783	Mou G., Wang K., Xu D., Zhou G.	Evaluation of three RT-qPCR-based miRNA detection methods using seven rice miRNAs.	Biosci. Biotechnol. Biochem.	77(6)	1349-53	2013		
39402	23807744	Yin X., Zheng F.Q., Tang W., Zhu Q.Q., Li X.D., Zhang G.M., Liu H.T., Liu B.S.	Genetic structure of rice black-streaked dwarf virus populations in China.	Arch. Virol.	158(12)	2505-15	2013		
39403	23748708	Li L., Liu X., Xie K., Wang Y., Liu F., Lin Q., Wang W., Yang C., Lu B., Liu S., Chen L., Jiang L., Wan J.	qLTG-9, a stable quantitative trait locus for low-temperature germination in rice (Oryza sativa L.).	Theor. Appl. Genet.	126(9)	2313-22	2013		
39404	23810669	Hashimoto M., Obara K., Ozono M., Furuyashiki M., Ikeda T., Suda Y., Fukase K., Fujimoto Y., Shigehisa H.	Separation and characterization of the immunostimulatory components in unpolished rice black vinegar (kurozu).	J. Biosci. Bioeng.	116(6)	688-96	2013		
39405	23825955	Wiemann P., Sieber C.M., von Bargen KW., Studt L., Niehaus E.M., Espino J.J., Hu? K., Michielse C.B., Albermann S., Wagner D., Bergner S.V., Connolly L.R., Fischer A., Reuter G., Kleigrewe K., Bald T., Wingfield B.D., Ophir R., Freeman S., Hippler M., Smith K.M., Brown D.W., Proctor R.H., M?nsterk?tter M., Freitag M., Humpf H.U., G?ldener U., Tudzynski B.	Deciphering the cryptic genome: genome-wide analyses of the rice pathogen Fusarium fujikuroi reveal complex regulation of secondary metabolism and novel metabolites.	PLoS Pathog.	9(6)	e1003475	2013		
39406	23794015	Jia Y., Zhou J.Y., He J.X., Du W., Bu Y.Q., Liu C.H., Dai C.C.	Distribution of the Entomopathogenic Fungus Beauveria bassiana in Rice Ecosystems and Its Effect on Soil Enzymes.	Curr. Microbiol.	67(5)	631-6	2013		
39407	23816581	Yang Y., Lu X.S., Li D.L., Yu Y.J.	Effects of Environmental Lead Pollution on Blood Lead and sex hormone Levels among Occupationally Exposed Group in An E-waste Dismantling Area.	Biomed. Environ. Sci.	26(6)	474-84	2013		
39408	23853510	Chen M., Zhao Z., Chen L., Zhou F., Zhong Z., Jiang L., Wan J.	Genetic analysis and fine mapping of a semi-dwarf gene in a centromeric region in rice (Oryza sativa L.).	Breed. Sci.	63(2)	164-8	2013		
39409	23771580	Deshmukh R.K., Vivancos J., Gu?rin V., Sonah H., Labb? C., Belzile F., B?langer RR.	Identification and functional characterization of silicon transporters in soybean using comparative genomics of major intrinsic proteins in Arabidopsis and rice.	Plant Mol. Biol.	83(4-5)	303-15	2013		
39410	23986916	Tan L., Chen S., Wang T., Dai S.	Proteomic insights into seed germination in response to environmental factors.	Proteomics	13(12-13)	1850-70	2013		
39411	23735202	Simon D., Straumann A., Dahinden C., Simon H.U.	Frequent sensitization to Candida albicans and profilins in adult eosinophilic esophagitis.	Allergy	68(7)	945-8	2013		
39412	23880034	Stokowa-So?tys K., Je?owska-Bojczuk M.	A rice fungicide blasticidin S efficiently binds Cu(II) ions and prevents DNA from metal-induced damage.	J. Inorg. Biochem.	127C	73-78	2013		
39413	23765738	Zhu Y.Q., Yu C.X., Li Y., Zhu Q.Q., Zhou L., Cao C., Yu T.T., Du F.P.	Research on the changes in wettability of rice (Oryza sativa.) leaf surfaces at different development stages using the OWRK method.	Pest Manag. Sci.	70(3)	462-9	2013		
39414	23750250	Zhang H.L., Bai X.L., Xue J.F., Chen Z.D., Tang H.M., Chen F.	Emissions of CH4 and N2O under different tillage systems from double-cropped paddy fields in Southern China.	PLoS ONE	8(6)	e65277	2013		
39415	23755304	Sauco S., G?mez J., Barboza F.R., Lercari D., Defeo O.	Modified whole effluent toxicity test to assess and decouple wastewater effects from environmental gradients.	PLoS ONE	8(6)	e66285	2013		
39416	23898996	Gopalakrishnan S., Vadlamudi S., Apparla S., Bandikinda P., Vijayabharathi R., Bhimineni R.K., Rupela O.	Evaluation of Streptomyces spp. for their plant-growth-promotion traits in rice.	Can. J. Microbiol.	59(8)	534-9	2013		
39417	23753178	Lakshmanan M., Zhang Z., Mohanty B., Kwon J.Y., Choi H.Y., Nam H.J., Kim D.I., Lee D.Y.	Elucidating Rice Cell Metabolism under Flooding and Drought Stresses Using Flux-Based Modeling and Analysis.	Plant Physiol.	162(4)	2140-50	2013		
39418	23790232	Summons R.E., Bird L.R., Gillespie A.L., Pruss S.B., Roberts M., Sessions A.L.	Lipid biomarkers in ooids from different locations and ages: evidence for a common bacterial flora.	Geobiology	11(5)	420-36	2013		
39419	23797042	Gartland K., Bruschi F., Dundar M., Gahan P., Viola Magni M., Akbarova Y.	Progress towards the 'Golden Age' of biotechnology.	Curr. Opin. Biotechnol.	24 Suppl 1	S6-S13	2013		
39420	23770899	Ma K., Conrad R., Lu Y.	Dry/Wet cycles change the activity and population dynamics of methanotrophs in rice field soil.	Appl. Environ. Microbiol.	79(16)	4932-9	2013		
39421	23776591	Li J., Andika I.B., Shen J., Lv Y., Ji Y., Sun L., Chen J.	Characterization of rice black-streaked dwarf virus- and rice stripe virus-derived siRNAs in singly and doubly infected insect vector Laodelphax striatellus.	PLoS ONE	8(6)	e66007	2013		
39422	23860021	Lee C.Y., Jan M.S., Yu M.C., Lin C.C., Wei J.C., Shih H.C.	Relationship between Adiponectin and Leptin, and Blood Lipids in Hyperlipidemia Patients Treated with Red Yeast Rice.	Forsch Komplementmed	20(3)	197-203	2013		
39423	23846143	Sharma H.K., Lahkar S., Kanta Nath L.	Formulation and in vitro evaluation of metformin hydrochloride loaded microspheres prepared with polysaccharide extracted from natural sources.	Acta Pharm	63(2)	209-22	2013		
39424	23853508	Yang R., Zhou Y., Cao Y., Yin Z., Yang L., Li J.	The transformation of the photo-thermo sensitive genic male-sterile line 261S of rice via an expression vector containing the anti-Waxy gene.	Breed. Sci.	63(2)	147-53	2013		
39425	23748134	Xu S., Luo J., Pan X., Liang X., Wu J., Zheng W., Chen C., Hou Y., Ma H., Zhou M.	Proteome analysis of the plant-pathogenic bacterium Xanthomonas oryzae pv. oryzae.	Biochim. Biophys. Acta	1834(8)	1660-70	2013		
39426	23835359	Ueda Y., Wu L., Frei M.	A critical comparison of two high-throughput ascorbate analyses methods for plant samples.	Plant Physiol. Biochem.	70	418-23	2013		
39427	23777608	Mujahid H., Tan F., Zhang J., Nallamilli B.R., Pendarvis K., Peng Z.	Nuclear proteome response to cell wall removal in rice (Oryza sativa).	Proteome Sci	11(1)	26	2013		
39428	23810898	Battaglia E., Klaubauf S., Vallet J., Ribot C., Lebrun M.H., de Vries RP.	Xlr1 is involved in the transcriptional control of the pentose catabolic pathway, but not hemi-cellulolytic enzymes in Magnaporthe oryzae.	Fungal Genet. Biol.	57	76-84	2013		
39429	23749877	Bart?k T., T?lgyesi L., Sz?csi A., Mesterh?zy A., Bart?k M., Gyimes E., V?ha A.	Detection of Previously Unknown Fumonisin P Analogue Mycotoxins in a Fusarium verticillioides Culture by High-Performance Liquid Chromatography-Electrospray Ionization Time-of-Flight and Ion Trap Mass Spectrometry.	J Chromatogr Sci	52(6)	508-13	2014		
39430	23731867	Siripornadulsil S., Siripornadulsil W.	Cadmium-tolerant bacteria reduce the uptake of cadmium in rice: potential for microbial bioremediation.	Ecotoxicol. Environ. Saf.	94	94-103	2013		
39431	23813016	Soda N., Kushwaha H.R., Soni P., Singla-Pareek SL., Pareek A.	A suite of new genes defining salinity stress tolerance in seedlings of contrasting rice genotypes.	Funct. Integr. Genomics	13(3)	351-65	2013		
39432	23799885	Xu M., Xu Z., Liu B., Kong F., Tsubokura Y., Watanabe S., Xia Z., Harada K., Kanazawa A., Yamada T., Abe J.	Genetic variation in four maturity genes affects photoperiod insensitivity and PHYA-regulated post-flowering responses of soybean.	BMC Plant Biol.	13	91	2013		
39433	23810152	Palmer D.J., Metcalfe J., Makrides M., Gold M.S., Quinn P., West C.E., Loh R., Prescott S.L.	Early regular egg exposure in infants with eczema: A randomized controlled trial.	J. Allergy Clin. Immunol.	132(2)	387-392.e1	2013		
39434	23782532	Du Y., Zhang H., Hong L., Wang J., Zheng X., Zhang Z.	Acetolactate synthases MoILV2 and MoIlv6 are required for infection-related morphogenesis in Magnaporthe oryzae.	Mol. Plant Pathol.	14(9)	870-84	2013		
39435	23803749	Narusaka Y., Shinya T., Narusaka M., Motoyama N., Shimada H., Murakami K., Shibuya N.	Presence of LYM2 dependent but CERK1 independent disease resistance in Arabidopsis.	Plant Signal Behav	8(9)		2013		
39436	23773148	Chen Z.C., Yokosho K., Kashino M., Zhao F.J., Yamaji N., Ma J.F.	Adaptation to acidic soil is achieved by increased numbers of cis-acting elements regulating ALMT1 expression in Holcus lanatus.	Plant J.	76(1)	10-23	2013		
39437	23847440	Wang C., Ye J., Tang W., Liu Z., Zhu C., Wang M., Wan J.	Loop Nucleotide Polymorphism in a Putative miRNA precursor Associated with seed length in Rice (Oryza sativa L.).	Int. J. Biol. Sci.	9(6)	578-86	2013	RIM2-M53,MIR2923A,ALPHACA10,BHC	Rim2-M53,osa-MIR2923a, MIR2923a,OsalphaCA10, alphaCA10,Ph=Bhc(Po), Bhc, Po, Ph, Bh3, PPO, Phr1, BH1
39438	23791937	Sudhamalla B., Kumar M., Kumar R.S., Sashi P., Yasin U.M., Ramakrishna D., Rao P.N., Bhuyan A.K.	Enzyme dimension of the ribosomal protein S4 across plant and animal kingdoms.	Biochim. Biophys. Acta	1830(11)	5335-41	2013		
39439	23759057	Tian Y.S., Xu J., Peng R.H., Xiong A.S., Xu H., Zhao W., Fu X.Y., Han H.J., Yao Q.H.	Mutation by DNA shuffling of 5-enolpyruvylshikimate-3-phosphate synthase from Malus domestica for improved glyphosate resistance.	Plant Biotechnol. J.	11(7)	829-38	2013		
39440	23812819	Su'udi M., Park J.M., Kang W.R., Hwang D.J., Kim S., Ahn I.P.	Quantification of rice sheath blight progression caused by Rhizoctonia solani.	J. Microbiol.	51(3)	380-8	2013		
39441	23860229	Baldoni E., Mattana M., Locatelli F., Consonni R., Cagliani L.R., Picchi V., Abbruscato P., Genga A.	Analysis of transcript and metabolite levels in Italian rice (Oryza sativa L.) cultivars subjected to osmotic stress or benzothiadiazole treatment.	Plant Physiol. Biochem.	70	492-503	2013		
39442	23820171	Jia H., Chen W., Yu X., Wu X., Li S., LIU H., Liao J., Liu W., Mi M., Liu L., Cheng D.	Black Rice Anthocyanidins Prevent Retinal Photochemical Damage via Involvement of AP-1/NF-kappaB/Caspase-1 pathway in Sprague-Dawley Rats.	J. Vet. Sci.	14(3)	345-53	2013		
39443	23766367	Pound M.P., French A.P., Atkinson J.A., Wells D.M., Bennett M.J., Pridmore T.	RootNav: Navigating Images of Complex Root Architectures.	Plant Physiol.	162(4)	1802-14	2013		
39444	23731343	Hoser R., Zurczak M., Lichocka M., Zuzga S., Dadlez M., Samuel M.A., Ellis B.E., Stuttmann J., Parker J.E., Hennig J., Krzymowska M.	Nucleocytoplasmic partitioning of tobacco N receptor is modulated by SGT1.	New Phytol.	200(1)	158-71	2013		
39445	23758479	Dehury B., Sahu M., Sarma K., Sahu J., Sen P., Modi M.K., Sharma G.D., Choudhury M.D., Barooah M.	Molecular Phylogeny, Homology Modeling, and Molecular Dynamics Simulation of Race-Specific Bacterial Blight Disease Resistance Protein (xa5) of Rice: A Comparative Agriproteomics Approach.	OMICS	17(8)	423-38	2013		
39446	23489060	Seo J.K., Wu J., Lii Y., Li Y., Jin H.	Contribution of small RNA pathway components in plant immunity.	Mol. Plant Microbe Interact.	26(6)	617-25	2013		
39447	23885202	Moreira C.N., Di-Nizo CB., de Jesus Silva MJ., Yonenaga-Yassuda Y., Ventura K.	A remarkable autosomal heteromorphism in Pseudoryzomys simplex 2n = 56; FN = 54-55 (Rodentia, Sigmodontinae).	Genet. Mol. Biol.	36(2)	201-6	2013		
39448	23755297	Cheng X., Xiang Y., Xie H., Xu C.L., Xie T.F., Zhang C., Li Y.	Molecular characterization and functions of fatty acid and retinoid binding protein gene (Ab-FAR-1) in Aphelenchoides besseyi.	PLoS ONE	8(6)	e66011	2013		
39449	23816327	Rong H., Tang Y., Zhang H., Wu P., Chen Y., Li M., Wu G., Jiang H.	The Stay-Green Rice like (SGRL) gene regulates chlorophyll degradation in rice.	J. Plant Physiol.	170(15)	1367-73	2013		
39450	23840426	Wang D., He Y., Li Y., Luan D., Zhai F., Yang X., Ma G.	Joint Association of Dietary Pattern and Physical Activity Level with Cardiovascular Disease Risk Factors among Chinese Men: A Cross-Sectional Study.	PLoS ONE	8(6)	e66210	2013		
39451	23799924	Zhang K.J., Zhu W.C., Rong X., Zhang Y.K., Ding X.L., Liu J., Chen D.S., Du Y., Hong X.Y.	The complete mitochondrial genomes of two rice planthoppers, Nilaparvata lugens and Laodelphax striatellus: conserved genome rearrangement in Delphacidae and discovery of new characteristics of atp8 and tRNA genes.	BMC Genomics	14	417	2013		
39452	23739066	Khandanlou R., Bin Ahmad M., Shameli K., Kalantari K.	Synthesis and characterization of rice straw/Fe3O4 nanocomposites by a quick precipitation method.	Molecules	18(6)	6597-607	2013		
39453	23767977	Ye H., Tang A., Huang L., Wang Y., Yang C., Hou Y., Peng H., Zhang F., Teng F.	Facile one-step synthesis and transformation of Cu(I)-doped zinc sulfide nanocrystals to Cu(1.94)S-ZnS heterostructured nanocrystals.	Langmuir	29(27)	8728-35	2013		
39454	23748354	Pompeiano A., Fanucchi F., Guglielminetti L.	Amylolytic activity and carbohydrate levels in relation to coleoptile anoxic elongation in Oryza sativa genotypes.	J. Plant Res.	126(6)	787-94	2013		
39455	23735506	Yu L., Chen X., Wang Z., Wang S., Wang Y., Zhu Q., Li S., Xiang C.	Arabidopsis enhanced drought tolerance1/HOMEODOMAIN GLABROUS11 confers drought tolerance in transgenic rice without yield penalty.	Plant Physiol.	162(3)	1378-91	2013		
39456	23749158	Hasnat A., Pervin M., Lim B.O.	Acetylcholinesterase inhibition and in vitro and in vivo antioxidant activities of Ganoderma lucidum grown on germinated brown rice.	Molecules	18(6)	6663-78	2013		
39457	23761487	Menguer P.K., Farthing E., Peaston K.A., Ricachenevsky F.K., Fett J.P., Williams L.E.	Functional analysis of the rice vacuolar zinc transporter OsMTP1.	J. Exp. Bot.	64(10)	2871-83	2013		
39458	23762023	Park S.Y., Choi J., Lim S.E., Lee G.W., Park J., Kim Y., Kong S., Kim S.R., Rho H.S., Jeon J., Chi M.H., Kim S., Khang C.H., Kang S., Lee Y.H.	Global expression profiling of transcription factor genes provides new insights into pathogenicity and stress responses in the rice blast fungus.	PLoS Pathog.	9(6)	e1003350	2013		
39459	23748707	Liu W.X., Liu H.L., Qu le Q.	Embryo-specific expression of soybean oleosin altered oil body morphogenesis and increased lipid content in transgenic rice seeds.	Theor. Appl. Genet.	126(9)	2289-97	2013		
39460	23803741	Yoon J., Kim J., Duy P.K., Kim M., Kang S., Chung H.	Diffuser-incorporated transmission NIR measurement for reliable analysis of packed granular samples.	Analyst	138(17)	4922-32	2013		
39461	23686299	Mauch F., Best R., Bauer G.	[Current treatment concepts for muscular injuries].	Unfallchirurg	116(6)	488-96	2013		
39462	23795884	Wu Y., Wang Q., Hillwig M.L., Peters R.J.	Picking sides: Distinct roles for CYP76M6 and -8 in rice oryzalexin biosynthesis.	Biochem. J.	454(2)	209-16	2013		
39463	23853514	Shinada H., Iwata N., Sato T., Fujino K.	Genetical and morphological characterization of cold tolerance at fertilization stage in rice.	Breed. Sci.	63(2)	197-204	2013		
39464	23792387	Wang J., Luo Y., Teng Y., Ma W., Christie P., Li Z.	Soil contamination by phthalate esters in Chinese intensive vegetable production systems with different modes of use of plastic film.	Environ. Pollut.	180	265-73	2013		
39465	23792660	Hickert L.R., Souza-Cruz PB., Rosa C.A., Ayub M.A.	Simultaneous saccharification and co-fermentation of un-detoxified rice hull hydrolysate by Saccharomyces cerevisiae ICV D254 and Spathaspora arborariae NRRL Y-48658 for the production of ethanol and xylitol.	Bioresour. Technol.	143	112-6	2013		
39466	23825566	Zhong X., Zhang H., Zhao Y., Sun Q., Hu Y., Peng H., Zhou D.X.	The rice NAD(+)-dependent histone deacetylase OsSRT1 targets preferentially to stress- and metabolism-related genes and transposable elements.	PLoS ONE	8(6)	e66807	2013		
39467	23190115	Shimizu T., Ogamino T., Hiraguri A., Nakazono-Nagaoka E., Uehara-Ichiki T., Nakajima M., Akutsu K., Omura T., Sasaya T.	Strong resistance against Rice grassy stunt virus is induced in transgenic rice plants expressing double-stranded RNA of the viral genes for nucleocapsid or movement proteins as targets for RNA interference.	Phytopathology	103(5)	513-9	2013		
39468	23717500	Huang X., Liu X., Chen X., Snyder A., Song W.Y.	Members of the XB3 Family from Diverse Plant Species Induce Programmed Cell Death in Nicotiana benthamiana.	PLoS ONE	8(5)	e63868	2013		
39469	23634840	Alqueres S., Meneses C.H., Rouws L., Rothballer M., Baldani J.I., Schmid M., Hartmann A.	The bacterial superoxide dismutase and gluthatione reductase are crucial for endophytic colonization of rice roots by Gluconacetobacter diazotrophicus strain PAL5.	Mol. Plant Microbe Interact.	26(8)	937-45	2013		
39470	23686450	Guo C., Ge X., Ma H.	The rice OsDIL gene plays a role in drought tolerance at vegetative and reproductive stages.	Plant Mol. Biol.	82(3)	239-53	2013	_	OsLTPd11, OsLTP6, OsLtpVI.3, OsDIL, DIL
39471	23672717	Cui Y., Zou L., Zou H., Li Y., Zakria M., Chen G.	HrpE3 is a type III effector protein required for full virulence of Xanthomonas oryzae pv. oryzicola in rice.	Mol. Plant Pathol.	14(7)	678-92	2013		
39472	23715017	Michalovova M., Vyskot B., Kejnovsky E.	Analysis of plastid and mitochondrial DNA insertions in the nucleus (NUPTs and NUMTs) of six plant species: size, relative age and chromosomal localization.	Heredity	111(4)	314-20	2013		
39473	23639970	Naito Y., Tomita M.	Identification of an Isogenic Semidwarf Rice Cultivar Carrying the Green Revolution sd1 Gene by Multiplex Codominant ASP-PCR and SSR Markers.	Biochem. Genet.	51(7-8)	530-42	2013		
39474	23636694	Albermann S., Elter T., Teubner A., Krischke W., Hirth T., Tudzynski B.	Characterization of novel mutants with an altered gibberellin spectrum in comparison to different wild-type strains of Fusarium fujikuroi.	Appl. Microbiol. Biotechnol.	97(17)	7779-90	2013		
39475	23718541	Voitsik A.M., Muench S., Deising H.B., Voll L.M.	Two recently duplicated maize NAC transcription factor paralogs are induced in response to Colletotrichum graminicola infection.	BMC Plant Biol.	13(1)	85	2013		
39476	23691254	Puranik S., Sahu P.P., Mandal S.N., B VS., Parida S.K., Prasad M.	Comprehensive Genome-Wide Survey, Genomic Constitution and Expression Profiling of the NAC Transcription Factor Family in Foxtail Millet (Setaria italica L.).	PLoS ONE	8(5)	e64594	2013		
39477	23718947	Ma B., He S.J., Duan K.X., Yin C.C., Chen H., Yang C., Xiong Q., Song Q.X., Lu X., Chen H.W., Zhang W.K., Lu T.G., Chen S.Y., Zhang J.S.	Identification of rice ethylene-response mutants and characterization of MHZ7/OsEIN2 in distinct ethylene response and yield trait regulation.	Mol Plant	6(6)	1830-48	2013	FLZ18,MRLK46,AMTR1,ERF2,Y37,SALT,EIN2,_,TIL1,GLP8-12,BU1,MCCA,FKBP46,PRX22,_,ICL,GLP8-11,SUB1B,SUB1C	OsFLZ18,SHR5, OsMRLK46,Osh36, OsH36, H36, OsAMTR1,OsWR4, WR4, OsERF#002, OsERF002, ERF002, OsERF2, AP2/EREBP#100, AP2/EREBP100,NAC11, ONAC011, ONAC11, OMTN4, OsY37, OsY37N, OsY37I, OsNAC1, DLN172, OsDLN172, OsNAC092, NAC092, OsNAC92, NAC92,salT*(sal1), SalT1*, sal1, Sal1, SALT, ML, SalT, OsSalT, OsJRL, JRL, Osl43, OsL43, OsMBL1, MBL1, OsJRL01, JRL01, OsJRL1, JRL1,OsEIN2, MHZ7/OsEIN2, OsEIN2/MHZ7, MHZ7 ,,NAC2, OsNAC2, ONAC004, ONAC4, ONAC034, ONAC34, ONAC058, ONAC58, OMTN2, Ostil1, OsNAC2/ONAC004, OsORE1.2, DLN113, OsDLN113,OsGLP8-12, OsCDP8.12, CDP8.12,ILI4, OsILI4 , OsBU1, BU1/ILI4, OsbHLH172, bHLH172,OsL55, OsMCCA,OsFKBP46, OsFKBP65c, FKBP65c,prx22, OsPRX22, OsPOD,,OsEnS-107, EnS-107, OsI85, I85, OsICL, Osl85, l43, Osl43, OsL85,OsGLP8-11, RGLP1, OsRGLP1, OsCDP8.11, CDP8.11,Sub1B, OsSUB1B, OsERF#063, OsERF063, ERF063, OsERF63, ERF63, AP2/EREBP#166, AP2/EREBP166,Sub1C, OsSUB1C, OsERF#073, OsERF073, ERF073, OsERF73, ERF73, AP2/EREBP#122, AP2/EREBP122, SUB1B
39478	23733059	Huang J., Liu J., Han C.D.	Formin homology 1 (OsFH1) regulates submergence-dependent root hair development in rice plants.	Plant Signal Behav	8(8)	e24970	2013		
39479	23731869	Furukawa T., Sawaguchi C., Watanabe A., Takahashi M., Nigorikawa M., Furukawa K., Iimura Y., Kajita S., Oguchi T., Ito Y., Sonoki T.	Application of fungal laccase fused with cellulose-binding domain to develop low-lignin rice plants.	J. Biosci. Bioeng.	116(5)	616-9	2013		
39480	23682119	Tian L., Dai L.L., Yin Z.J., Fukuda M., Kumamaru T., Dong X.B., Xu X.P., Qu L.Q.	Small GTPase Sar1 is crucial for proglutelin and alpha-globulin export from the endoplasmic reticulum in rice endosperm.	J. Exp. Bot.	64(10)	2831-45	2013	SAR1D,SAR1A,SAR1C,SAR1B	OsSAR1, SAR1, OsARL1c, ARL1c, OsSar1d, Sar1d,OsARL1e, ARL1e, OsSar1b, Sar1b, OsSar1a, Sar1a,OsARL1d, ARL1d, OsSar1c, Sar1c,OsARL1f, ARL1f, OsSar1b, Sar1b
39481	23697584	Kozuka C., Yabiku K., Takayama C., Matsushita M., Shimabukuro M.	Natural food science based novel approach toward prevention and treatment of obesity and type 2 diabetes: Recent studies on brown rice and gamma-oryzanol.	Obes Res Clin Pract	7(3)	e165-72			
39482	23703395	Serra T.S., Figueiredo D.D., Cordeiro A.M., Almeida D.M., Louren?o T., Abreu I.A., Sebasti?n A., Fernandes L., Contreras-Moreira B., Oliveira M.M., Saibo N.J.	OsRMC, a negative regulator of salt stress response in rice, is regulated by two AP2/ERF transcription factors.	Plant Mol. Biol.	82(4-5)	439-55	2013	RMC,EREBP1,ERF99	OsRMC, OsRLK, OsDUF26, DUF26, OsCBMIP, CBMIP, NCS, OsNCS, OsCRK5, CRK5,OsEREBP1, OsERF#070, OsERF070, OsERF70, ERF70, AP2/EREBP#084, AP2/EREBP84,OsERF#099, OsERF099, OsERF99, AP2/EREBP#080, AP2/EREBP80, OsEREBP2, EREBP2
39483	23661287	Tao F., Zhang Z., Shi W., Liu Y., Xiao D., Zhang S., Zhu Z., Wang M., Liu F.	Single rice growth period was prolonged by cultivars shifts but yield was damaged by climate change during 1981-2009 in China, and late rice was just opposite.	Glob Chang Biol	19(10)	3200-9	2013		
39484	23634838	Guo H., Song X., Xie C., Huo Y., Zhang F., Chen X.Y., Geng Y., Fang R.	Rice yellow stunt rhabdovirus protein 6 suppresses systemic RNA silencing by blocking RDR6-mediated secondary siRNA synthesis.	Mol. Plant Microbe Interact.	26(8)	927-36	2013		
39485	23676354	Lu M.X., Du Y.Z., Cao S.S., Liu P., Li J.	Molecular Cloning and Characterization of the First Caspase in the Striped Stem Borer, Chilo suppressalis.	Int J Mol Sci	14(5)	10229-41	2013		
39486	23679139	Akbar Ali M., Violi A.	Reaction Pathways for the Thermal Decomposition of Methyl Butanoate.	J. Org. Chem.	78(12)	5898-5908	2013		
39487	23645867	Yeang H.Y.	Solar rhythm in the regulation of photoperiodic flowering of long-day and short-day plants.	J. Exp. Bot.	64(10)	2643-52	2013		
39488	23659677	Kalpana B.J., Sindhulakshmi M., Pandian S.K.	Amylase enzyme from Bacillus subtilis S8-18: A potential desizing agent from marine environment.	Biotechnol. Appl. Biochem.	61(2)	134-44	2014		
39489	23770592	Hu Y., Zhu N., Wang X., Yi Q., Zhu D., Lai Y., Zhao Y.	Analysis of rice Snf2 family proteins and their potential roles in epigenetic regulation.	Plant Physiol. Biochem.	70C	33-42	2013		
39490	23672828	Caminiti L., Salzano G., Crisafulli G., Porcaro F., Pajno G.B.	Food protein induced enterocolitis syndrome caused by rice beverage.	Ital J Pediatr	39	31	2013		
39491	23667043	Wang C., Bao Y., Wang Q., Zhang H.	Introduction of the rice CYP714D1 gene into Populus inhibits expression of its homologous genes and promotes growth, biomass production, and xylem fibre length in transgenic trees.	J. Exp. Bot.	64(10)	2847-57	2013		
39492	23674687	Faulkner C., Petutschnig E., Benitez-Alfonso Y., Beck M., Robatzek S., Lipka V., Maule A.J.	LYM2-dependent chitin perception limits molecular flux via plasmodesmata.	Proc. Natl. Acad. Sci. U.S.A.	110(22)	9166-70	2013		
39493	23689259	Wei X., Zhang X., Shao G., He J., Jiao G., Xie L., Sheng Z., Tang S., Hu P.	Fine mapping of BH1, a gene controlling lemma and palea development in rice.	Plant Cell Rep.	32(9)	1455-63	2013		
39494	23717458	Degenkolbe T., Do P.T., Kopka J., Zuther E., Hincha D.K., K?hl KI.	Identification of drought tolerance markers in a diverse population of rice cultivars by expression and metabolite profiling.	PLoS ONE	8(5)	e63637	2013		
39495	23713079	Koo B.H., Yoo S.C., Park J.W., Kwon C.T., Lee B.D., An G., Zhang Z., Li J., Li Z., Paek N.C.	Natural variation in OsPRR37 regulates heading date and contributes to rice cultivation at a wide range of latitudes.	Mol Plant	6(6)	1877-88	2013	GHD7,HD3A,HD2	Ghd2, Ghd7, OsGhd7, OsCCT26, OsCMF8, OsI, Ghd7/Hd4, Hd4, EH7-1/Hd4, Ghd7-0a, EH7-1, EH7/Ghd7, EH7, OsEH7, GLW7.1, OsGLW7.1,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,Hd2(t), Hd2, qHD2(t), OsPRR37, Os-PRR37, PRR37, Prr4, OsPRR4, DTH7, Os DTH7, OsCCT28, CCT28, Ghd7.1, PRR37/Hd2, EH7-2, EH7-2/Hd2, Hd2/PRR37, PRR37-1a, PRR37-1b, PRR37-1c, PRR37-2a, PRR37- 2, HD7.2
39496	23695503	Li X., Hou S., Gao Q., Zhao P., Chen S., Qi D., Lee B.H., Cheng L., Liu G.	LcSAIN1, a Novel Salt-Induced Gene from SheepGrass, Confers Salt Stress Tolerance in Transgenic Arabidopsis and Rice.	Plant Cell Physiol.	54(7)	1172-85	2013		
39497	23782215	Nezhad R.M., Shahpiri A., Mirlohi A.	Discrimination between two rice metallothionein isoforms belonging to type 1 and type 4 in metal-binding ability.	Biotechnol. Appl. Biochem.	60(3)	275-82	2013	MTI1B	OsMT1b, MT1b, OsMT-I-1b, OsMTI-1b, MT-I-1b, MTI-1b, MT1La, OsMT1La, OsMT1
39498	23675421	Zhu X.Y., Li P., Yang Y.B., Liu M.L.	Xuezhikang, extract of red yeast rice, improved abnormal hemorheology, suppressed caveolin-1 and increased eNOS expression in atherosclerotic rats.	PLoS ONE	8(5)	e62731	2013		
39499	23694780	Hirano K., Hino S., Oshima K., Okajima T., Nadano D., Urisu A., Takaiwa F., Matsuda T.	Allergenic potential of rice pollen proteins: expression, immuno-cross reactivity and IgE-binding.	J. Biochem.	154(2)	195-205	2013		
39500	23650998	Sun L., Li X., Fu Y., Zhu Z., Tan L., Liu F., Sun X., Sun X., Sun C.	GS6, a member of the GRAS gene family, negatively regulates grain size in rice.	J Integr Plant Biol	55(10)	938-49	2013		
39501	23656875	Soni P., Kumar G., Soda N., Singla-Pareek SL., Pareek A.	Salt Overly Sensitive pathway members are influenced by diurnal rhythm in rice.	Plant Signal Behav	8(7)	e24738	2013		
39502	23750161	Hirose T., Aoki N., Harada Y., Okamura M., Hashida Y., Ohsugi R., Akio M., Hirochika H., Terao T.	Disruption of a rice gene for alpha-glucan water dikinase, OsGWD1, leads to hyperaccumulation of starch in leaves but exhibits limited effects on growth.	Front Plant Sci	4	147	2013		
39503	23738013	Wankhede D.P., Misra M., Singh P., Sinha A.K.	Rice mitogen activated protein kinase kinase and mitogen activated protein kinase interaction network revealed by in-silico docking and yeast two-hybrid approaches.	PLoS ONE	8(5)	e65011	2013		
39504	23708376	de Almeida SL., Schmidt E.C., Pereira D.T., Kreusch M., de L Felix MR., Osorio L.K., de Paula Martins R., Latini A., Ramlov F., Chow F., Maraschin M., Rodrigues A.C., Bouzon Z.L.	Effect of ultraviolet-B radiation in laboratory on morphological and ultrastructural characteristics and physiological parameters of selected cultivar of Oryza sativa L.	Protoplasma	250(6)	1303-13	2013		
39505	23702967	Lu M.X., Hua J., Cui Y.D., Du Y.Z.	Five small heat shock protein genes from Chilo suppressalis: characteristics of gene, genomic organization, structural analysis, and transcription profiles.	Cell Stress Chaperones	19(1)	91-104	2013		
39506	23665591	Franck W.L., Gokce E., Oh Y., Muddiman D.C., Dean R.A.	Temporal analysis of the Magnaporthe oryzae proteome during conidial germination and cAMP-mediated appressorium formation.	Mol. Cell Proteomics	12(8)	2249-65	2013		
39507	23766026	Yan H.W., Hong L., Zhou Y.Q., Jiang H.Y., Zhu S.W., Fan J., Cheng B.J.	A genome-wide analysis of the ERF gene family in sorghum.	Genet. Mol. Res.	12(2)	2038-55	2013		
39508	23718837	Wu Y., Bao Y., Xie L., Su Y., Chu R., He W., Huang J., Wang J., Zhang H.	Fine mapping and identification of blast resistance gene Pi-hk1 in a broad-spectrum resistant Japonica rice landrace.	Phytopathology	103(11)	1162-8	2013	PIHK1	Pi-hk1
39509	23651319	Yang C., Li D., Mao D., Liu X., Ji C., Li X., Zhao X., Cheng Z., Chen C., Zhu L.	Overexpression of microRNA319 impacts leaf morphogenesis and leads to enhanced cold tolerance in rice (Oryza sativa?L.).	Plant Cell Environ.	36(12)	2207-18	2013	MIR319A,PCF5,PCF8,MIR319B	OsmiR319a, Osa-miR319a, osa-MIR319aosa-miR319a osa-miR319a-3p osa-miR319a-3p.2-3p,OsPCF5,OsPCF8,OsmiR319b, Osa-miR319b
39510	23659345	Bahadur R.P., Basak J.	Molecular modeling of protein-protein interaction to decipher the structural mechanism of nonhost resistance in rice.	J. Biomol. Struct. Dyn.	32(4)	669-81	2014		
39511	23702306	Utkina L.L., Andreev Y.A., Rogozhin E.A., Korostyleva T.V., Slavokhotova A.A., Oparin P.B., Vassilevski A.A., Grishin E.V., Egorov T.A., Odintsova T.I.	Genes encoding 4-Cys antimicrobial peptides in wheat Triticum kiharae Dorof. et Migush.: multimodular structural organization, instraspecific variability, distribution and role in defence.	FEBS J.	280(15)	3594-608	2013		
39512	23667703	Song D., Cho W.K., Park S.H., Jo Y., Kim K.H.	Evolution of and horizontal gene transfer in the endornavirus genus.	PLoS ONE	8(5)	e64270	2013		
39513	23733066	Sahoo R.K., Tuteja N.	Effect of salinity tolerant PDH45 transgenic rice on physicochemical properties, enzymatic activities and microbial communities of rhizosphere soils.	Plant Signal Behav	8(8)	e24950	2013		
39514	23656311	Wang L., Jiang W., Zhang Y., Wang S., Ma R., Sun W.	Ax21-triggered immunity plays a significant role in rice defense against Xanthomonas oryzae pv. oryzicola.	Phytopathology			2013		
39515	23755054	Wang M., Gruissem W., Bhullar N.K.	nicotianamine synthase overexpression positively modulates iron homeostasis-related genes in high iron rice.	Front Plant Sci	4	156	2013		
39516	23634958	Gaash R., Elazar M., Mizrahi K., Avramov-Mor M., Berezin I., Shaul O.	Phylogeny and a structural model of plant MHX transporters.	BMC Plant Biol.	13	75	2013		
39517	23649259	Himeno N., Saburi W., Wakuta S., Takeda R., Matsuura H., Nabeta K., Sansenya S., Ketudat Cairns JR., Mori H., Imai R., Matsui H.	Identification of Rice beta-Glucosidase with High Hydrolytic Activity towards Salicylic Acid beta-D-Glucoside.	Biosci. Biotechnol. Biochem.	77(5)	934-9	2013		
39518	23700450	Sun X.Q., Zhang M.X., Yu J.Y., Jin Y., Ling B., Du J.P., Li G.H., Qin Q.M., Cai Q.N.	Glutathione S-Transferase of Brown Planthoppers (Nilaparvata lugens) Is Essential for Their Adaptation to Gramine-Containing Host Plants.	PLoS ONE	8(5)	e64026	2013		
39519	23659665	Liu M.T., Wang A.L., Sun Z., Li J.J., Wu X.L., Liu Y.X., Shang X.Y.	Cytotoxic monacolin analogs from Monascus purpureus-fermented rice.	J Asian Nat Prod Res	15(6)	600-9	2013		
39520	23686337	Yoshikawa T., Ozawa S., Sentoku N., Itoh J.I., Nagato Y., Yokoi S.	Change of shoot architecture during juvenile-to-adult phase transition in soybean.	Planta	238(1)		2013		
39521	23692054	Liu T., Liu H., Zhang H., Xing Y.	Validation and characterization of Ghd7.1, a major QTL with pleiotropic effects on spikelets per panicle, plant height, and heading date in rice (Oryza sativa L.).	J Integr Plant Biol	55(10)	917-27	2013		
39522	23663326	Zan Y., Ji Y., Zhang Y., Yang S., Song Y., Wang J.	Genome-wide identification, characterization and expression analysis of populus leucine-rich repeat receptor-like protein kinase genes.	BMC Genomics	14	318	2013		
39523	23674369	Dawar C., Jain S., Kumar S.	Insight into the 3D structure of ADP-glucose pyrophosphorylase from rice (Oryza sativa L.).	J Mol Model	19(8)	3351-67	2013		
39524	23663106	Dardick C., Callahan A., Horn R., Ruiz K.B., Zhebentyayeva T., Hollender C., Whitaker M., Abbott A., Scorza R.	PpeTAC1 promotes the horizontal growth of branches in peach trees and is a member of a functionally conserved gene family found in diverse plants species.	Plant J.	75(4)	618-30	2013		
39525	23711378	Wang G.H., Wang X.Q., Qiao F., Zhu Z.R., Cheng J.A.	Development and preliminary application of a triplex real-time polymerase chain reaction assay for evaluating predation on three planthoppers in a rice ecosystem.	Mol Ecol Resour	13(5)	811-9	2013		
39526	23705659	Chi W.C., Chen Y.A., Hsiung Y.C., Fu S.F., Chou C.H., Trinh N.N., Chen Y.C., Huang H.J.	Autotoxicity mechanism of Oryza sativa: transcriptome response in rice roots exposed to ferulic acid.	BMC Genomics	14(1)	351	2013		
39527	23750162	Aung M.S., Masuda H., Kobayashi T., Nakanishi H., Yamakawa T., Nishizawa N.K.	Iron biofortification of myanmar rice.	Front Plant Sci	4	158	2013		
39528	23700411	Hiscox A., Khammanithong P., Kaul S., Sananikhom P., Luthi R., Hill N., Brey P.T., Lindsay S.W.	Risk Factors for Mosquito House Entry in the Lao PDR.	PLoS ONE	8(5)	e62769	2013		
39529	23649167	Alvarez C.E., Saigo M., Margarit E., Andreo C.S., Drincovich M.F.	Kinetics and functional diversity among the five members of the NADP-malic enzyme family from Zea mays, a C4 species.	Photosyn. Res.	115(1)	65-80	2013		
39530	23666184	Raorane M.L., Mutte S.K., Varadarajan A.R., Pabuayon I.M., Kohli A.	Protein SUMOylation and plant abiotic stress signaling: in silico case study of rice RLKs, heat-shock and Ca(2+)-binding proteins.	Plant Cell Rep.	32(7)	1053-65	2013		
39531	23774221	Huang Y.F., Chiueh P.T., Kuan W.H., Lo S.L.	Microwave pyrolysis of rice straw: Products, mechanism, and kinetics.	Bioresour. Technol.	142C	620-624	2013		
39532	23660284	Vincent J., Dai Z., Ravel C., Choulet F., Mouzeyar S., Bouzidi M.F., Agier M., Martre P.	dbWFA: a web-based database for functional annotation of Triticum aestivum transcripts.	Database (Oxford)	2013(0)	bat014	2013		
39533	23718125	Zhou L., Huang T.W., Sun S., Wang J.Y., Chen G., Poplawsky A.R., He Y.W.	The rice bacterial pathogen Xanthomonas oryzae pv. oryzae produces 3-hydroxybenzoic acid and 4-hydroxybenzoic acid via XanB2 for use in xanthomonadin, ubiquinone and exopolysaccharide biosynthesis.	Mol. Plant Microbe Interact.	26(10)	1239-48	2013		
39534	23733064	Tan D., Lv Q., Chen X., Shi J., Ren M., Wu P., Mao C.	Interactions among rice ORC subunits.	Plant Signal Behav	8(8)	e25007	2013		
39535	23656867	Lv Q., Xu J., Wu P.	OsPAPST1, a useful mutant for identifying seed purity and authenticity in hybrid rice.	Plant Signal Behav	8(7)	e24819	2013		
39536	23675379	Masuda H., Kobayashi T., Ishimaru Y., Takahashi M., Aung M.S., Nakanishi H., Mori S., Nishizawa N.K.	Iron-biofortification in rice by the introduction of three barley genes participated in mugineic acid biosynthesis with soybean ferritin gene.	Front Plant Sci	4	132	2013		
39537	23705930	He L., Zhao M., Wang Y., Gai J., He C.	Phylogeny, structural evolution and functional diversification of the plant PHOSPHATE1 gene family: a focus on Glycine max.	BMC Evol. Biol.	13	103	2013		
39538	23668360	Kwon C.T., Yoo S.C., Koo B.H., Cho S.H., Park J.W., Zhang Z., Li J., Li Z., Paek N.C.	Natural variation in Early flowering1 contributes to early flowering in japonica rice under long days.	Plant Cell Environ.	37(1)	101-12	2014		
39539	23702596	Chen W., Gong L., Guo Z., Wang W., Zhang H., Liu X., Yu S., Xiong L., Luo J.	A Novel Integrated Method for Large-scale Detection, Identification and Quantification of Widely-targeted Metabolites: Application in Study of Rice Metabolomics.	Mol Plant	6(6)	1769-80	2013		
39540	23649262	Nakagawa K.	Studies Targeting alpha-Glucosidase Inhibition, Antiangiogenic Effects, and Lipid Modification Regulation: Background, Evaluation, and Challenges in the Development of Food Ingredients for Therapeutic Purposes.	Biosci. Biotechnol. Biochem.	77(5)	900-8	2013		
39541	23680125	Zhang K., Hu D., Zhu H., Yang J., Wu J., He M., Jin L., Yang S., Song B.	Enantioselective hydrolyzation and photolyzation of dufulin in water.	Chem Cent J	7(1)	86	2013		
39542	23675376	Negruk V.	Mitochondrial Genome Sequence of the Legume Vicia faba.	Front Plant Sci	4	128	2013		
39543	23666066	Meyers D., Mukherjee S., Cheng J.G., Middey S., Zhou J.S., Goodenough J.B., Gray B.A., Freeland J.W., Saha-Dasgupta T., Chakhalian J.	Zhang-Rice physics and anomalous copper states in A-site ordered perovskites.	Sci Rep	3	1834	2013		
39544	23733074	Nosaka M., Ishiwata A., Shimizu-Sato S., Ono A., Ishimoto K., Noda Y., Sato Y.	The copy number of rice CACTA DNA transposons carrying miR820 does not correlate with miR820 expression.	Plant Signal Behav	8(8)	e25169	2013		
39545	23644036	Chen Z., He Y., Shi B., Yang D.	human serum albumin from recombinant DNA technology: Challenges and strategies.	Biochim. Biophys. Acta	1830(12)	5515-25	2013		
39546	23720666	Newman M.A., Sundelin T., Nielsen J.T., Erbs G.	MAMP (microbe-associated molecular pattern) triggered immunity in plants.	Front Plant Sci	4	139	2013		
39547	23735799	Suriyachai N., Weerasaia K., Laosiripojana N., Champreda V., Unrean P.	Optimized simultaneous saccharification and co-fermentation of rice straw for ethanol production by Saccharomyces cerevisiae and Scheffersomyces stipitis co-culture using design of experiments.	Bioresour. Technol.	142C	171-178	2013		
39548	23653313	Su'udi M., Kim J., Park J.M., Bae S.C., Kim D., Kim Y.H., Ahn I.P.	Quantification of Rice blast disease Progressions Through Taqman Real-Time PCR.	Mol. Biotechnol.	55(1)	43-8	2013		
39549	23648859	Song Y.R., Jeong D.Y., Cha Y.S., Baik S.H.	Exopolysaccharide produced by Pediococcus acidilactici M76 isolated from the Korean traditional rice wine, makgeolli.	J. Microbiol. Biotechnol.	23(5)	681-8	2013		
39550	23734193	Zhang F., Du Z., Huang L., Cruz C.V., Zhou Y., Li Z.	Comparative Transcriptome Profiling Reveals Different Expression Patterns in Xanthomonas oryzae pv. oryzae Strains with Putative Virulence-Relevant Genes.	PLoS ONE	8(5)	e64267	2013		
39551	0	Beutler A.N., Munareto J.D., Ramao C.J., Galon L., Dias N.P., Pozzebon B.C., Rodrigues L.A.T., Munareto G.S., Giacomeli R., Ramos P.V.	Soil physical properties and rice straw levels in management systems: Effect on irrigated rice yield [Propriedades fisicas do solo e produtividade de arroz irrigado em diferentes sistemas de manejo]	Rev. Bras. Cienc. Solo	36	1601-1607	2012		
39552	0	Theeba M., Bachmann R.T., Illani Z.I., Zulkefli M., Husni M.H.A., Samsuri A.W.	Characterization of local mill rice husk charcoal and its effect on compost properties	Malaysian Journal of Soil Science	16	89-102	2012		
39553	0	Hamayun M., Khan S.A., Khan A.L., Afzal M., Lee I.J.	Endophytic Cephalotheca sulfurea AGH07 reprograms soybean to higher growth	J Plant Interact	7	301-306	2012		
39554	22276194	Hauberg-Lotte L., Klingenberg H., Scharf C., Bohm M., Plessl J., Friedrich F., Volker U., Becker A., Reinhold-Hurek B.	Environmental factors affecting the expression of pilAB as well as the proteome and transcriptome of the grass endophyte Azoarcus sp. strain BH72	PLoS ONE	7	e30421	2012		
39555	0	dos Santos G.R., Cunha A.C.F., Ignacio M., Neto M.D.D.C., dos Reis M.R., Aguiar R.W.D.S.	Diversity of Magnaporthe grisea in upland rice of Southern Tocantins State, Brazil [Diversidade de Magnaporthe grisea em arroz de terras altas no sul do Estado do Tocantins, na safra 2008/09]	Revista Ceres	59	65-70	2012		
39556	0	Marini P., Moraes C.L., Marini N., de Moraes D.M., Amarante L.	Physiological and biochemistry changes in seeds of rice subjected to heat stress [Alteracoes fisiologicas e bioquimicas em sementes de arroz submetidas ao estresse termico]	Revista Ciencia Agronomica	43	722-730	2012		
39557	0	Tran T.M., Bui H.H., Luxhoi J., Jensen L.S.	Application rate and composting method affect the immediate and residual manure fertilizer value in a maize-rice-rice-maize cropping sequence on a degraded soil in northern Vietnam	Soil Sci. Plant Nutr.	58	206-223	2012		
39558	22295065	Segovia J., Sabbah A., Mgbemena V., Tsai S.Y., Chang T.H., Berton M.T., Morris I.R., Allen I.C., Ting J.P.Y., Bose S.	TLR2/MyD88/NF-??B pathway, reactive oxygen species, potassium efflux activates NLRP3/ASC inflammasome during respiratory syncytial virus infection	PLoS ONE	7	e29695	2012		
39559	0	Felix Alvarez R.C., Costa Crusciol C.A., Stephan Nascente A.	Growth analysis and yield of traditional, intermediate and modern upland rice cultivars [Analise de crescimento e produtividade de cultivares de arroz de terras altas dos tipos tradicional, intermediario e moderno]	Pesquisa Agropecuaria Tropical	42	397-406	2012		
39560	0	Lobo-Hernandez M.I., Saldamando-Benjumea C.I.	Molecular characterization and genetic differentiation of spodoptera frugiperda J. E. Smith (Lepidoptera: Noctuidae) in Maize, rice, and cotton fields of Colombia with AFLP [Caracterizacion molecular y diferenciacion genetica de spodoptera frugiperda J. E. Smith (Lepidoptera: Noctuidae) en Cultivos de Maiz, Arroz, y algodonero de Colombia con el uso de AFLP]	Southwestern Entomologist	37	193-207	2012		
39561	0	da Silveira Pinheiro L., Rangel P.H.N., Vianello R.P., Brondani C.	Genetic variability of rice recurrent selection populations as affected by male sterility or manual recombination	Pesqui. Agropecu. Bras.	47	808-814	2012		
39562	0	Jung K.H., An G.	Application of MapMan and RiceNet drives systematic analyses of the early heat stress transcriptome in rice seedlings	Journal of Plant Biology	55	436-449	2012		
39563	22808269	Shaikh F.Y., Utley T.J., Craven R.E., Rogers M.C., Lapierre L.A., Goldenring J.R., Crowe Jr.	Respiratory syncytial virus assembles into structured filamentous virion particles independently of host cytoskeleton and related proteins	PLoS ONE	7	e40826	2012		
39564	0	Chakhonkaen S., Pitnjam K., Saisuk W., Ukoskit K., Muangprom A.	Genetic structure of Thai rice and rice accessions obtained from the international rice research institute	Rice (N Y)	5	19	2012		
39565	22412984	Sacco R.E., Nonnecke B.J., Palmer M.V., Waters W.R., Lippolis J.D., Reinhardt T.A.	Differential expression of cytokines in response to respiratory syncytial virus infection of calves with high or low circulating 25-hydroxyvitamin D 3	PLoS ONE	7	e33074	2012		
39566	0	Kasem S., Waters D.L.E., Henry R.J.	Analysis of Starch Gene Diversity in the Wild Relatives of Oryza sativa	Trop Plant Biol	5	286-308	2012		
39567	0	Stone L.F., Heinemann A.B.	Simulation of nitrogen management in upland rice with ORYZA/APSIM 2000 model [Simulacao do manejo do nitrogenio em arroz de terras altas com o modelo ORYZA/APSIM 2000]	Revista Brasileira de Engenharia Agricola e Ambiental	16	611-617	2012		
39568	0	Ibrahim I.K.A., Awd-Allah S.F.A., Handoo Z.A.	Host suitability of some poaceous crop cultivars for heterodera goldeni	Nematropica	42	324-329	2012		
39569	22479589	Marchal J., Blanc S., Epelbaum J., Aujard F., Pifferi F.	Effects of chronic calorie restriction or dietary resveratrol supplementation on insulin sensitivity markers in a primate, microcebus murinus	PLoS ONE	7	e34289	2012		
39570	22272270	Othumpangat S., Walton C., Piedimonte G.	MicroRNA-221 modulates RSV replication in human bronchial epithelium by targeting NGF expression	PLoS ONE	7	e30030	2012		
39571	0	Jung K.H., Ko H.J., Nguyen M.X., Kim S.R., Ronald P., An G.	Genome-wide identification and analysis of early heat stress responsive genes in rice	Journal of Plant Biology	55	458-468	2012		
39572	23056391	Aeffner F., Davis I.C.	Respiratory Syncytial Virus Reverses Airway Hyperresponsiveness to Methacholine in Ovalbumin-Sensitized Mice	PLoS ONE	7	e46660	2012		
39573	22403603	Rice W.L., Zhang Y., Chen Y., Matsuzaki T., Brown D., Lu H.A.J.	Differential, phosphorylation dependent trafficking of AQP2 in LLC-PK1 cells	PLoS ONE	7	e32843	2012		
39574	22383950	Boyapalle S., Wong T., Garay J., Teng M., San Juan-Vergara H., Mohapatra S., Mohapatra S.	Respiratory syncytial virus NS1 protein colocalizes with mitochondrial antiviral signaling protein MAVS following infection	PLoS ONE	7	e29386	2012		
39575	22470426	Eshaghi A., Duvvuri V.R., Lai R., Nadarajah J.T., Li A., Patel S.N., Low D.E., Gubbay J.B.	Genetic variability of human respiratory syncytial virus a strains circulating in Ontario: A novel genotype with a 72 nucleotide G gene duplication	PLoS ONE	7	e32807	2012		
39576	0	Sovu, Tigabu M., Savadogo P., Oden P.C.	Facilitation of forest landscape restoration on abandoned swidden fallows in laos using mixed-species planting and biochar application	Silva Fennica	46	39-51	2012		
39577	0	Jen F.Y., Tsay T.T., Chen P.	Aphelenchoides bicaudatus from ornamental nurseries in Taiwan and its relationship with some agricultural crops	Plant Dis.	96	1763-1766	2012		
39578	22384158	Demidova-Rice T.N., Wolf L., Deckenback J., Hamblin M.R., Herman I.M.	Human platelet-rich plasma- and extracellular matrix-derived peptides promote impaired cutaneous wound healing in vivo	PLoS ONE	7	e32146	2012		
39579	0	Silva M.L.D.S., Levy C.D.C.B., Vitti G.C.	Availability of heavy metals in contaminated soil evidenced by chemical extractants	Revista Ceres	59	406-413	2012		
39580	22927950	Kim K.S., Lee Y.H.	Gene expression profiling during conidiation in the rice blast pathogen Magnaporthe oryzae	PLoS ONE	7	e43202	2012		
39581	0	Sizemore G.C., Main M.B.	Quality of flooded rice and fallow fields as foraging habitat for Little Blue Herons and Great Egrets in the everglades agricultural area, USA	Waterbirds	35	381-393	2012		
39582	0	Nomura E.S., Damatto Junior E.R., Fuzitani E.J., Saes L.A., Jensen E.	Acclimatization of micropropagated 'Grand Naine' banana seedling with application of biofertilizers in two seasons [Aclimatizacao de mudas micropropagadas de bananeira 'grand naine' com aplicacao de biofertilizantes em duas estacoes do ano]	Revista Ceres	59	518-529	2012		
39583	22590614	Kamphuis T., Meijerhof T., Stegmann T., Lederhofer J., Wilschut J., de Haan A.	Immunogenicity and protective capacity of a virosomal respiratory syncytial virus vaccine adjuvanted with monophosphoryl lipid a in mice	PLoS ONE	7	e36812	2012		
39584	0	Hoat T.X., Bon N.G., van Quan M., Hien V.D., Thanh N.D., Dickinson M.	Detection and molecular characterization of sugarcane grassy shoot phytoplasma in Vietnam	Phytoparasitica	40	351-359	2012		
39585	0	Khan A.L., Shinwari Z.K., Kim Y.H., Waqas M., Hamayun M., Kamran M., Lee I.J.	Role of endophyte chaetomium globosum lk4 in growth of capsicum annuum by producion of gibberellins and indole acetic acid	Pak J Bot	44	1601-1607	2012		
39586	0	Abdelkader A.F., El-khawas S., El-sherif N.A.S.E., Hassanein R.A., Emam M.A., Hassan R.E.	Expression of aquaporin gene (Os PIP1-3) in salt-stressed rice (Oryzasativa l.) plants pre-treated with the neurotransmitter (dopamine)	Plant OMICS	5	532-541	2012		
39587	0	Paltridge N.G., Palmer L.J., Milham P.J., Guild G.E., Stangoulis J.C.R.	Energy-dispersive X-ray fluorescence analysis of zinc and iron concentration in rice and pearl millet grain	Plant Soil	361	251-260	2012		
39588	0	Rios-Diez J.D., Siegfried B., Saldamando-Benjumea C.I.	Susceptibility of spodoptera frugiperda (Lepidoptera: Noctuidae) strains from central Colombia to Cry1Ab and Cry1Ac entotoxins of bacillus thuringiensis	Southwestern Entomologist	37	281-293	2012		
39589	0	Choi M.S., Heu S., Paek N.C., Koh H.J., Lee J.S., Oh C.S.	Expression of hpa1 gene encoding a bacterial harpin protein in Xanthomonas oryzae pv. oryzae enhances disease resistance to both fungal and bacterial pathogens in rice and Arabidopsis	Plant Pathology Journal	28	364-372	2012		
39590	22662266	Bian T., Gibbs J.D., Orvell C., Imani F.	Respiratory syncytial virus matrix protein induces lung epithelial cell cycle arrest through a p53 dependent pathway	PLoS ONE	7	e38052	2012		
39591	22655066	Remot A., Roux X., Dubuquoy C., Fix J., Bouet S., Moudjou M., Eleouet J.F., Riffault S., Petit-Camurdan A.	Nucleoprotein nanostructures combined with adjuvants adapted to the neonatal immune context: A candidate mucosal RSV vaccine	PLoS ONE	7	e37722	2012		
39592	0	de Freitas D.A.F., Silva M.L.N., Cardoso E.L., Curi N.	Soil quality indexes under different forestry and adjacent native scrubland use and management systems [Indices de qualidade do solo sob diferentes sistemas de uso e manejo florestal e cerrado nativo adjacente]	Revista Ciencia Agronomica	43	417-428	2012		
39593	0	Chutipaijit S., Cha-um S., Sompornpailin K.	An evaluation of water deficit tolerance screening in pigmented indica rice genotypes	Pak J Bot	44	65-72	2012		
39594	0	Che Radziah C.M.Z., Siti Nurkhalida A.K., Zamri Z., Ismanizan I.	Effect of illumination, casein hydrolysate and proline on callus induction of Oryza sativa L. CV. MR219	Malaysian Applied Biology	41	37-41	2012		
39595	22393401	Loebbermann J., Schnoeller C., Thornton H., Durant L., Sweeney N.P., Schuijs M., O'Garra A., Johansson C., Openshaw P.J.	IL-10 regulates viral lung immunopathology during acute respiratory syncytial virus infection in mice	PLoS ONE	7	e32371	2012		
39596	22574108	Faber T.E., Schuurhof A., Vonk A., Koppelman G.H., Hennus M.P., Kimpen J.L.L., Janssen R., Bont L.J.	IL1RL1 gene variants and nasopharyngeal IL1RL-a levels are associated with severe RSV bronchiolitis: A multicenter cohort study	PLoS ONE	7	e34364	2012		
39597	0	Yooyongwech S., Cha-Um S., Supaibulwatana K.	Proline related genes expression and physiological changes in indica rice response to water-deficit stress	Plant OMICS	5	597-603	2012		
39598	0	Klys M.	An influence of herbs on the sex structure in populations of insect pests of stored products	Journal of Plant Protection Research	52	463-466	2012		
39599	0	Baloch M.J., Dunwell J., Khan N.U., Khakwani A.A., Dennet M., Jatoi W.A.	Profiling dehydrin gene sequence and physiological parameters in drought tolerant and susceptible spring wheat cultivars	Pak J Bot	44	801-806	2012		
39600	0	Wang Y., Wu J., Lee D.Y., Kim Y.J., Kim Y.C., Choi S., GiKim -B., Park S., Kim S.G., Kang K.Y., Kim S.T.	Comparative secretome analysis of differentially-induced proteins in rice lesion mimic mutant spotted leaf 11 (spl11)	Plant OMICS	5	567-575	2012		
39601	0	Abdur Rashid M., Kamrul Hasan M.	Domestic and international competitiveness of production of selected agricultural commodities in Bangladesh	Thai J. Agric. Sci.	45	45-57	2012		
39602	22511982	Tian J.C., Chen Y., Li Z.L., Li K., Chen M., Peng Y.F., Hu C., Shelton A.M., Ye G.Y.	Transgenic Cry1Ab rice does not impact ecological fitness and predation of a generalist spider.	PLoS ONE	7	e35164	2012		
39603	22792355	Empey K.M., Orend J.G., Peebles R.S., Egana L., Norris K.A., Oury T.D., Kolls J.K.	Stimulation of immature lung macrophages with intranasal interferon gamma in a novel neonatal mouse model of respiratory syncytial virus infection	PLoS ONE	7	e40499	2012		
39604	0	Engel K., Asch F., Becker M.	Classification of rice genotypes based on their mechanisms of adaptation to iron toxicity	Journal of Plant Nutrition and Soil Science	175	871-881	2012		
39605	22511929	Sharma M.K., Sharma R., Cao P., Jenkins J., Bartley L.E., Qualls M., Grimwood J., Schmutz J., Rokhsar D., Ronald P.C.	A genome-wide survey of switchgrass genome structure and organization.	PLoS ONE	7	e33892	2012		
39606	0	Da Silva R.R., Rodrigues L.U., De Freitas G.A., De Melo A.V., Do Nascimento I.R., D'Andrea A.F.	Influence of carbonized rice husk in different substrates on quality of tomato seedlings [Influencia de casca de arroz carbonizada em diferentes substratos na qualidade de mudas de tomateiro]	Revista Brasileirade Ciencias Agrarias	7	803-809	2012		
39607	0	Matin M.N., Kang S.G.	Genetic and Phenotypic Analysis of LAX1-6, a Mutant Allele of LAX PANICLE1 in Rice	Journal of Plant Biology	55	50-63	2012		
39608	22905186	Robles P., Micol J.L., Quesada V.	Arabidopsis mda1, a nuclear-encoded protein, functions in chloroplast development and abiotic stress responses	PLoS ONE	7	e42924	2012		
39609	0	Ngwe K., Kheoruenromne I., Suddhiprakarn A.	Otassium status and physicochemical and mineralogical properties of lowland vertisols in a rice-based cropping system under tropical savanna climate	Kasetsart Journal - Natural Science	46	522-537	2012		
39610	24191617	Rahman M.F., Jalal K.C.A., Jahan N., Kamaruzzaman B.Y., Ara R., Arshad A.	Present status and approaches for the sustainable development of community based fish culture in seasonal floodplains of Bangladesh	Pakistan Journal of Biological Sciences	15	551-567	2012		
39611	0	Kim S.Y., Gutierrez J., Kim P.J.	Considering winter cover crop selection as green manure to control methane emission during rice cultivation in paddy soil	Agriculture, Ecosystems and Environment	161	130-136	2012		
39612	0	Lebesi D.M., Tzia C.	Use of endoxylanase treated cereal brans for development of dietary fiber enriched cakes	Innovative Food Science and Emerging Technologies	13	207-214	2012		
39613	0	Khaliq A., Matloob A., Mahmood S., Abbas R.N., Bismillah Khan M.	Seeding density and herbicide tank mixtures furnish better weed control and improve growth, yield and quality of direct seeded fine rice	Int J Agric Biol	14	499-508	2012		
39614	0	Sanchez C., Carvalho V.L., Kathriner A., O'Shea M., Kaiser H.	First report on the herpetofauna of the Oecusse District, an exclave of Timor-Leste	Herpetol Notes	5	137-149	2012		
39615	22970579	Allred L.K., Park E.S., Popping B., Williams K., Marrow T.	EZ GlutenR for the qualitative detection of gluten in foods, beverages, and environmental surfaces	J AOAC Int	95	1106-1117	2012		
39616	0	Oujifard A., Seyfabadi J., Abedian Kenari A., Rezaei M.	Growth and apparent digestibility of nutrients, fatty acids and amino acids in Pacific white shrimp, Litopenaeus vannamei, fed diets with rice protein concentrate as total and partial replacement of fish meal	Aquaculture	342-343	56-61	2012		
39617	0	Egbon I.N., Ayertey J.N., Eziah V.Y.	Relative susceptibility of 13 cowpea (Vigna unguiculata) varieties and some cereal grains to attack by sitophilus oryzae (Coleoptera: Curculionidae)	African Entomology	20	343-349	2012		
39618	0	Dey R.C., Hassan L., Al Munsur M.A.Z., Islam M.M., Begum S.N., Halder J.	Analysis of genetic variability in regenerated and germinated plantlets of ten indica rice genotypes (Oryza sativa L.) using RAPD markers	Agrochimica	56(1)	55-64	2012		
39619	0	Soe K.T., de Costa D.M.	Development of a spore-based formulation of microbial pesticides for control of rice sheath blight	Biocontrol Sci Technol	22	633-657	2012		
39620	0	Erbert C., Lopes A.A., Yokoya N.S., Furtado N.A.J.C., Conti R., Pupo M.T., Lopes J.L.C., Debonsi H.M.	Antibacterial compound from the endophytic fungus Phomopsis longicolla isolated from the tropical red seaweed Bostrychia radicans	Botanica Marina	55	435-440	2012		
39621	0	Rey M.S.R., Beneman D.P., Pinto L.S., da Silva F.S.P., Braga E.J.B., Moura A.B., Pierobom C.R., Peters J.A.	Induction of resistance in rice against Bipolaris oryzae Breda de Hann by constitutive expression of achitinase gene [Inducao de resistencia em arroz contra Bipolaris oryzae breda de Hann, atraves da expressao constitutiva de um gene de quitinase]	Bioscience Journal	28	745-752	2012		
39622	0	Gaydon D.S., Probert M.E., Buresh R.J., Meinke H., Suriadi A., Dobermann A., Bouman B., Timsina J.	Rice in cropping systems-Modelling transitions between flooded and non-flooded soil environments	European Journal of Agronomy	39	9-24	2012		
39623	0	Arshadullah M., Ali A., Hyder S.I., Khan A.M.	Effect of wheat residue incorporation along with n starter dose on rice yield and soil health under saline sodic soil	Journal of Animal and Plant Sciences	22	753-757	2012		
39624	0	Martins R.G., De Camargo E Castro P.R., Araujo D.K., Silva J.M., Martins M.B.G.	Gibberellin sources and doses on development of dwarf rice in biotests [Fontes e doses de giberelina no desempenho de arroz anao em biotestes]	Comunicata Scientiae	3	306-309	2012		
39625	0	Mahmood N., Ahmad B., Hassan S., Bakhsh K.	Impact of temperature ADN precipitation on rice productivity in rice-wheat cropping system of Punjab province	Journal of Animal and Plant Sciences	22	993-997	2012		
39626	0	Madian H.R., El-Gendy N.Sh., Farahat L.A., Abo-State M.A., Ragab A.M.E.	Fungal hydrolysis and saccharification of rice straw and ethanol production	Biosciences Biotechnology Research Asia	9	467-476	2012		
39627	0	Kant P., Gulati A., Harris L., Gleddie S., Singh J., Pauls K.P.	Transgenic corn plants with modified ribosomal protein l3 show decreased ear rot disease after inoculation with Fusarium graminearum	Aust J Crop Sci	6	1598-1605	2012		
39628	0	Cardiet G., Fuzeau B., Barreau C., Fleurat-Lessard F.	Contact and fumigant toxicity of some essential oil constituents against a grain insect pest Sitophilus oryzae and two fungi, Aspergillus westerdijkiae and Fusarium graminearum	J Pest Sci (2004)	85	351-358	2012		
39629	22943499	Kavallieratos N.G., Athanassiou C.G., Arthur F.H., Throne J.E.	Lesser grain borers, Rhyzopertha dominica, select rough rice kernels with cracked hulls for reproduction	Journal of Insect Science	12	38	2012		
39630	0	Borutova R., Aragon Y.A., Nahrer K., Berthiller F.	Co-occurrence and statistical correlations between mycotoxins in feedstuffs collected in the Asia-Oceania in 2010	Anim. Feed Sci. Technol.	178	190-197	2012		
39631	0	Ebling P.D., Zanella I., Karkow A.K., Alves D.A., Santos J.P.A., Pigozzo J.C.	Methods of incorporation of the enzyme phytase in diets for laying hens [Metodos de incorporacao da enzima fitase em racoes para poedeiras]	Ciencia Rural	42	160-165	2012		
39632	0	Rejesus R.M., Mutuc M.E.M., Yasar M., Lapitan A.V., Palis F.G., Chi T.T.N.	Sending Vietnamese Rice Farmers Back to School: Further Evidence on the Impacts of Farmer Field Schools	Canadian Journal of Agricultural Economics	60	407-426	2012		
39633	0	Binang W.B., Ntia J.D., Shiyam O.J.	Genotype and seeding date effects on performance of mangrove rice (Oryza sativa L.) in the Cross River Estuary	Journal of Agronomy	11	79-84	2012		
39634	0	Karami A., Homaee M., Afzalinia S., Ruhipour H., Basirat S.	Organic resource management: Impacts on soil aggregate stability and other soil physico-chemical properties	Agriculture, Ecosystems and Environment	148	22-28	2012		
39635	0	Sacmaci S., Kartal S., Sacmaci M.	Selective back-extraction and preconcentration of zinc(II) from metal-1,3,5-triketone extracts prior to its determination by flame atomic absorption spectrometry	Int J Environ Anal Chem	92	1626-1637	2012		
39636	0	Silvarajan L., Nulit R., Zaman F.Q.	Effects of plant growth regulators on in vitro regeneration of malaysian Indica rice (Oryza sativa L.) Cv. MR219 by shoot apical meristem	Asian Journal of Agricultural Research	6	180-187	2012		
39637	0	Salaudeen M.T.	Resistance in rice to Rice yellow mottle virus and evidence of non-seed transmission	Archives of Phytopathology and Plant Protection	45	2406-2413	2012		
39638	0	Samaranayake P., Peiris B.D., Dssanayake S.	Effect of excessive ferrous (Fe 2+) on growth and iron content in rice (Oryza sativa)	Int J Agric Biol	14	296-298	2012		
39639	0	Nor Munirah M.Y., Siti Shafurah A., Norazmir M.N., Hayati Adilin M.A.M., Ajau D.	Roles of whole grains-based products in maintaining treatment targets among Type 2 diabetes mellitus patients	Asian Journal of Clinical Nutrition	4	67-76	2012		
39640	0	Tubana B.S., Harrell D.L., Walker T., Teboh J., Lofton J., Kanke Y.	In-season canopy reflectance-based estimation of rice yield response to nitrogen	Agron J	104	1604-1611	2012		
39641	0	Noltze M., Schwarze S., Qaim M.	Understanding the adoption of system technologies in smallholder agriculture: The system of rice intensification (SRI) in Timor Leste	Agric Syst	108	64-73	2012		
39642	0	Hussain M., Jang K.H., Farooq M., Lee D.J.	Morphological and physiological evaluation of Korean Rice genotypes for salt resistance	Int J Agric Biol	14	970-974	2012		
39643	0	Gonzalez N., Godoy-Lutz G., Steadman J.R., Higgins R., Eskridge K.M.	Assessing genetic diversity in the web blight pathogen Thanatephorus cucumeris (anamorph = Rhizoctonia solani) subgroups AG-1-IE and AG-1-IF with molecular markers	Journal of General Plant Pathology	78	85-98	2012		
39644	0	Cook F.R., Fahy B., Trafford K.	A rice mutant lacking a large subunit of ADP-glucose pyrophosphorylase has drastically reduced starch content in the culm but normal plant morphology and yield	Functional Plant Biology	39	1068-1078	2012		
39645	0	Yi G.H., Lee H.S., Sohn J.K., Kim K.M.	Physico-chemical properties of Arabidopsis Ca2+/H+ antiporter transgenic rice grain	Bioscience Research	9	8-16	2012		
39646	0	Bayer T., Arrue A., da Costa I.F.D., Lenz G., Coradini C., Sari B.G., Pes M.P.	Aerial fungicide application on irrigated lowland rice with varying spraying nozzles [Aplicacao aerea de fungicidas na cultura do arroz irrigado com diferentes bicos de pulverizacao]	Ciencia Rural	42	2185-2191	2012		
39647	0	Heinemann A.B., Van Oort P.A.J., Fernandes D.S., Maia A.H.N.	Sensitivity of APSIM/ORYZA model due to estimation errors in solar radiation [Analise de sensibilidade do modelo APSIM/ORYZA na estimava de erros na radiacao solar]	Bragantia	71	572-582	2012		
39648	0	Ahmad H.R., Aziz T., Hussain S., Akraam M., Sabir M., Kashif S.U.R., Hanafi M.M.	Zinc-enriched farm yard manure improves grain yield and grain zinc concentration in rice grown on a saline-sodic soil	Int J Agric Biol	14	787-792	2012		
39649	0	Khan J.A., Arshad H.M.I., Saleem K., Sandhu A.F., Hasnain S., Babar M.M.	Evaluation of resistance genes in rice against local isolates of Xanthomonas oryzae pv. oryzae in Punjab Province of Pakistan	Archives of Phytopathology and Plant Protection	45	1826-1839	2012		
39650	0	Sichonany O.R.A.O., Schlosser J.F., Medina R.D., Roggia I.B., Lobo J.S., dos Santos F.B.	Telemetry in transmission of performance data of agricultural machines using GSM/GPRS and Zigbee [Telemetria na transmissao de dados de desempenho de maquinas agricolas utilizando tecnologias GSM/GPRS e Zigbee]	Ciencia Rural	42	1430-1433	2012		
39651	0	Kiani G., Nematzadeh G.A., Ghareyazie B., Sattari M.	Pyramiding of cry1Ab and fgr genes in two Iranian rice cultivars Neda and Nemat	Journal of Agricultural Science and Technology	14	1087-1092	2012		
39652	0	Fidelis R.R., Rotili E.A., dos Santos M.M., Barros H.B., Rodrigues A.M.	Efficiency on use and application response of nitrogen in cultivars of rice in high land in the south of Tocantins State, harvest 2007/2008 [Eficiencia quanto ao uso e resposta a aplicacao de nitrogenio de cultivares de arroz em solos de terras altas no sul do Estado de Tocantins, safra 2007/2008]	Bioscience Journal	28	432-438	2012		
39653	0	Rebolledo M.C., Dingkuhn M., Pere P., Mcnally K.L., Luquet D.	Developmental Dynamics and Early Growth Vigour in Rice. I. Relationship Between Development Rate (1/Phyllochron) and Growth	Journal of Agronomy and Crop Science	198	374-384	2012		
39654	0	Gaydon D.S., Probert M.E., Buresh R.J., Meinke H., Timsina J.	Modelling the role of algae in rice crop nutrition and soil organic carbon maintenance	European Journal of Agronomy	39	35-43	2012		
39655	0	Shaheen S.M., Shams M.S., Elbehiry F.A., Ibrahim S.M.	Influence of stabilized biosolids application on availability of phosphorus, copper, and zinc	Applied and Environmental Soil Science	2012	-	2012		
39656	0	Andreau R., Gelati P., Provaza M., Bennardi D., Fernandez D., Vazquez M.	Physical and chemical degradation of two horticultural soils of La Plata. Alternative treatment [Degradacion fisica y quimica de dos suelos del cordon horticola platense. alternativas de tratamiento]	Ciencia del Suelo	30	107-117	2012		
39657	0	Kahlon U.Z., Murtaza G., Ghafoor A.	Amelioration of saline-sodic soil with amendments using brackish water, canal water and their combination	Int J Agric Biol	14	38-46	2012		
39658	0	Tabkhkar N., Rabiei B., Sabouri A.	Genetic diversity of rice cultivars by microsatellite markers tightly linked to cooking and eating quality	Aust J Crop Sci	6	980-985	2012		
39659	0	Bashir U., Javaid A., Bajwa R.	Allelopathic effects of sunflower residue on growth of rice and subsequent wheat crop [Efectos alelopaticos de residuos de girasol sobre El crecimiento de arroz y cultivo de trigo subsecuente. El girasol (Helianthus annuus L.)]	Chilean Journal of Agricultural Research	72	326-331	2012		
39660	0	Theerakulpisut P., Gunnula W.	Exogenous sorbitol and trehalose mitigated salt stress damage in salt-sensitive but not salt-tolerant rice seedlings	Asian Journal of Crop Science	4	165-170	2012		
39661	0	Ng L.C., Sariah M., Sariam O., Radziah O., Zainal Abidin M.A.	Bio-efficacy of microbial-fortified rice straw compost on rice blast disease severity, growth and yield of aerobic rice	Australasian Plant Pathology	41	541-549	2012		
39662	0	Ndjiondjop M.N., Seek P.A., Lorieux M., Futakuchi K., Yao K.N., Djedatin G., Sow M.E., Bocco R., Cisse F., Fatondji B.	Effect of Drought on Oryza glaberrima Rice Accessions and Oryza glaberrima Derived-lines	Asian Journal of Agricultural Research	6	144-157	2012		
39663	0	Afzal I., Butt A., Rehman H.U., Basra S.M.A., Afzal A.	Alleviation of salt stress in fine aromatic rice by seed priming	Aust J Crop Sci	6	1401-1407	2012		
39664	0	Keeratiurai P.	Developing model of self-reliant lifestyle with the philosophy of sufficiency economy	European Journal of Scientific Research	84	500-506	2012		
39665	0	Worou O.N., Gaiser T., Saito K., Goldbach H., Ewert F.	Simulation of soil water dynamics and rice crop growth as affected by bunding and fertilizer application in inland valley systems of West Africa	Agriculture, Ecosystems and Environment	162	24-35	2012		
39666	0	Kim D., Han G.D.	High hydrostatic pressure treatment combined with enzymes increases the extractability and bioactivity of fermented rice bran	Innovative Food Science and Emerging Technologies	16	191-197	2012		
39667	23231659	Buchanan M., Burton R.A., Dhugga K.S., Rafalski A.J., Tingey S.V., Shirley N.J., Fincher G.B.	Endo-(1,4)-??-Glucanase gene families in the grasses: Temporal and spatial Co-transcription of orthologous genes1	BMC Plant Biol.	12	235	2012		
39668	0	Jaidee R., Polthanee A., Saenjan P.	Growth and yield of soybean cultivars as affected by ground water levels and phosphorus rates grown under greenhouse and field conditions	Aust J Crop Sci	6	81-92	2012		
39669	0	Youseftabar S., Fallah A., Daneshiyan J.	Effect of split application of nitrogen fertilizer on growth and yield of hybrid rice(GRH1)	Advances in Environmental Biology	6	2485-2489	2012		
39670	0	Chang P.F.L., Huang W.K., Lin Y.H., Chen Y., Chang T.H.	Protective function of the recombinant Oshsp18.0-CII protein, a class II small heat shock protein of rice, in Escherichia coli	Botanical Studies	53	291-299	2012		
39671	0	Chanthakhoun V., Wanapat M.	The in vitro gas production and ruminal fermentation of various feeds using rumen liquor from swamp buffalo and cattle	Asian Journal of Animal and Veterinary Advances	7	54-60	2012		
39672	0	Amirjani M.R.	Effect of NaCl stress on rice physiological properties	Archives of Phytopathology and Plant Protection	45	228-243	2012		
39673	0	Amatulli M.T., Spadaro D., Gullino M.L., Garibaldi A.	Conventional and real-time PCR for the identification of Fusarium fujikuroi and Fusarium proliferatum from diseased rice tissues and seeds	European Journal of Plant Pathology	134	401-408	2012		
39674	0	Sabeti A., Kenarsari M.J., Normohammadi G., Jafari A.A., Sharifabad H.H., Mahalleh J.K.	Effects of drought stress, planting density and geometry on yield and yield components of rice in Khoramabad region	Advances in Environmental Biology	6	2617-2626	2012		
39675	0	Fasahat P., Muhammad K., Abdullah A., Ratnam W.	Proximate nutritional composition and antioxidant properties of Oryza rufipogon, a wild rice collected from Malaysia compared to cultivated rice, MR219	Aust J Crop Sci	6	1502-1507	2012		
39676	0	Felicia J., Gervais N.K., Seri-Kouassi, Kouahou F.B.	Apercu des problemes de stockage et incidences des insectes sur la conservation du riz et du mais en milieux paysan: Cas de la region de bouafle-Cote d,Ivoire	European Journal of Scientific Research	83	349-363	2012		
39677	0	Fasahat P., Abdullah A., Muhammad K., Karupaiah T., Ratnam W.	Red Pericarp Advanced Breeding Lines Derived from Oryza Rufipogon x Oryza Sativa: Physicochemical Properties, Total Antioxidant Activity, Phenolic Compounds and Vitamin E Content	Advance Journal of Food Science and Technology	4	155-165	2012		
39678	0	Win K.M., Korinsak S., Jantaboon J., Siangliw M., Lanceras-Siangliw J., Sirithunya P., Vanavichit A., Pantuwan G., Jongdee B., Sidhiwong N., Toojinda T.	Breeding the Thai jasmine rice variety KDML105 for non-age-related broad-spectrum resistance to bacterial blight disease based on combined marker-assisted and phenotypic selection	Field Crops Res.	137	186-194	2012		
39679	0	Fani S.R., Zamanizadeh H., Moradi M.	Comparison between cultural methods and TLC for detection of atoxigenic strains of Aspergillus flavus isolated from Iranian pistachio	Acta Hortic.	963	33-35	2012		
39680	0	Medina A., Gonzalez-Vera A., Pineda J., Hernandez A.	Cultural characterization and pathogenic test of Ceratobasidium spp isolated from maize banded leaf [Incidencia, caracterizacion cultural y prueba de patogenicidad de ceratobasidium sp. aislado de manchas bandeadas en maiz]	Bioagro	24	197-204	2012		
39681	0	Kavallieratos N.G., Athanassiou C.G., Mpassoukou A.E., Mpakou F.D., Tomanovi? Z., Manessioti T.B., Papadopoulou S.C.	Bioassays with diatomaceous earth formulations: Effect of species co-occurrence, size of vials and application technique	Crop Protection	42	170-179	2012		
39682	0	Belda C., Riudavets J.	Reproduction of the parasitoids Anisopteromalus calandrae (Howard) and Lariophagus distinguendus (Forster) on arenas containing a mixed population of the coleopteran pests Sitophilus oryzae and Rhyzopertha dominica	J Pest Sci (2004)	85	381-385	2012		
39683	0	Gevrek M.N., Atasoy G.D., Yigit A.	Growth and yield response of rice (Oryza sativa) to different seed coating agents	Int J Agric Biol	14	826-830	2012		
39684	0	Nader G.A., Cun G.S., Robinson P.H.	Impacts of silica levels, and location in the detergent fiber matrix, on in vitro gas production of rice straw	Anim. Feed Sci. Technol.	174	140-147	2012		
39685	0	MUTALIB A.A., RADZIAH O., SHUKOR Y., NAHER U.A.	Effect of nitrogen fertilizer on hydrolytic enzyme production, root colonisation, N metabolism, leaf physiology and growth of rice inoculated with Bacillus sp. (Sb42).	Aust J Crop Sci	6	1383-1389	2012		
39686	0	Huyen N.T., Wanapat M., Navanukraw C.	Effect of Mulberry leaf pellet (MUP) supplementation on rumen fermentation and nutrient digestibility in beef cattle fed on rice straw-based diets	Anim. Feed Sci. Technol.	175	8-15	2012		
39687	0	Hatala J.A., Detto M., Sonnentag O., Deverel S.J., Verfaillie J., Baldocchi D.D.	Greenhouse gas (CO 2, CH 4, H 2O) fluxes from drained and flooded agricultural peatlands in the Sacramento-San Joaquin Delta	Agriculture, Ecosystems and Environment	150	1-18	2012		
39688	0	Aminpanah H., Sharifi P., Firouzi S.	Interference interactions of two species of Echinochloa genus with rice [Interacciones de interferencia entre dos especies del genero Echinochloa con arroz]	Chilean Journal of Agricultural Research	72	364-370	2012		
39689	0	Jilani M., Daneshian J., Rabiee M.	Effect of pre-harvest desiccation of paraquat on grain yield and some agronomic characteristics of Faba bean	Advances in Environmental Biology	6	2502-2504	2012		
39690	22695859	Reim A., Luke C., Krause S., Pratscher J., Frenzel P.	One millimetre makes the difference: High-resolution analysis of methane-oxidizing bacteria and their specific activity at the oxic-anoxic interface in a flooded paddy soil	ISME Journal	6	2128-2139	2012		
39691	24004611	Shinkawa R., Morishita A., Amikura K., Machida R., Murakawa H., Kuchitsu K., Ishikawa M.	Abscisic acid induced freezing tolerance in chilling-sensitive suspension cultures and seedlings of rice.	BMC Res Notes	6	351	2013		
39692	24047253	Wang H., Xu D., Pu L., Zhou G.H.	Southern rice black-streaked dwarf virus Alters insect Vectors' Host Orientation Preferences to Enhance Spread and Increase Rice ragged stunt virus Co-infection.	Phytopathology	104(2)	196-201	2014		
39693	24040375	Huang Z., Pan X.D., Wu P.G., Han J.L., Chen Q.	Health risk assessment of heavy metals in rice to the population in zhejiang, china.	PLoS ONE	8(9)	e75007	2013		
39694	23849114	Jung E.S., Lee S., Lim S.H., Ha S.H., Liu K.H., Lee C.H.	Metabolite profiling of the short-term responses of rice leaves (Oryza sativa cv. Ilmi) cultivated under different LED lights and its correlations with antioxidant activities.	Plant Sci.	210	61-9	2013		
39695	24090830	Li Y., Duan Y.P., Huang F., Yang J., Xiang N., Meng X.Z., Chen L.	Polybrominated diphenyl ethers in e-waste: Level and transfer in a typical e-waste recycling site in Shanghai, Eastern China.	Waste Manag	34(6)	1059-65	2014		
39696	24163626	Hossain M.B., Puteh A.B.	Emission of carbon dioxide influenced by different water levels from soil incubated organic residues.	ScientificWorldJournal	2013	638582	2013		
39697	24068225	Martinez M.F., Philippi S.T., Estima C., Leal G.	Validity and reproducibility of a food frequency questionnaire to assess food group intake in adolescents.	Cad Saude Publica	29(9)	1795-804	2013		
39698	24190103	Chen W., Chen H., Zheng T., Yu R., Terzaghi W.B., Li Z., Deng X.W., Xu J., He H.	Highly efficient genotyping of rice biparental populations by GoldenGate assays based on parental resequencing.	Theor. Appl. Genet.	127(2)	297-307	2014		
39699	24243826	Lai X.W., Sun D.L., Ruan C.Q., Zhang H., Liu C.L.	Rapid analysis of aflatoxins B1 , B2 , and ochratoxin A in rice samples using dispersive liquid-liquid microextraction combined with HPLC.	J Sep Sci	37(1-2)	92-8	2014		
39700	24164515	Hammond B., Kough J., Herouet-Guicheney C., Jez J.M.	Toxicological evaluation of proteins introduced into food crops.	Crit. Rev. Toxicol.	43 Suppl 2	25-42	2013		
39701	24278269	Breen J., Wicker T., Shatalina M., Frenkel Z., Bertin I., Philippe R., Spielmeyer W., Simkov? H., Saf?? J., Cattonaro F., Scalabrin S., Magni F., Vautrin S., Berg?s H., Paux E., Fahima T., Dolezel J., Korol A., Feuillet C., Keller B.	A Physical Map of the Short Arm of Wheat Chromosome 1A.	PLoS ONE	8(11)	e80272	2013		
39702	24188923	Qian X., Shen G., Wang Z., Guo C., Liu Y., Lei Z., Zhang Z.	Co-composting of livestock manure with rice straw: Characterization and establishment of maturity evaluation system.	Waste Manag	34(2)	530-5	2014		
39703	24209919	Tousheh M., Miroliaei M., Asghar Rastegari A., Ghaedi K., Esmaeili A., Matkowski A.	Computational evaluation on the binding affinity of non-specific lipid-transfer protein-2 with fatty acids.	Comput. Biol. Med.	43(11)	1732-8	2013		
39704	24240810	Miah G., Rafii M.Y., Ismail M.R., Puteh A.B., Rahim H.A., Islam KhN., Latif M.A.	A review of microsatellite markers and their applications in rice breeding programs to improve blast disease resistance.	Int J Mol Sci	14(11)	22499-528	2013		
39705	24260455	Melkonian S., Argos M., Hall M.N., Chen Y., Parvez F., Pierce B., Cao H., Aschebrook-Kilfoy B., Ahmed A., Islam T., Slavcovich V., Gamble M., Haris P.I., Graziano J.H., Ahsan H.	Urinary and dietary analysis of 18,470 bangladeshis reveal a correlation of rice consumption with arsenic exposure and toxicity.	PLoS ONE	8(11)	e80691	2013		
39706	24244501	Araneda L., Sim S.C., Bae J.J., Chakraborty N., Curley J., Chang T., Inoue M., Warnke S., Jung G.	Comparative Genome Analysis between Agrostis stolonifera and Members of the Pooideae Subfamily, including Brachypodium distachyon.	PLoS ONE	8(11)	e79425	2013		
39707	24244529	Ji R., Yu H., Fu Q., Chen H., Ye W., Li S., Lou Y.	Comparative Transcriptome Analysis of Salivary Glands of Two Populations of Rice Brown Planthopper, Nilaparvata lugens, That Differ in Virulence.	PLoS ONE	8(11)	e79612	2013		
39708	24244838	Ray A., Deb D., Ray R., Chattopadhayay B.	Phenotypic characters of rice landraces reveal independent lineages of short-grain aromatic indica rice.	AoB Plants	5	plt032	2013		
39709	24263095	Dar M.H., de Janvry A., Emerick K., Raitzer D., Sadoulet E.	Flood-tolerant rice reduces yield variability and raises expected yield, differentially benefitting socially disadvantaged groups.	Sci Rep	3	3315	2013		
39710	23927717	Sato T., Furuya J., Tamada Y., Kondo H.	Impacts of palatal coverage on bolus formation during mastication and swallowing and subsequent adaptive changes.	J Oral Rehabil	40(10)	751-7	2013		
39711	23936527	Hotta C.T., Nishiyama M.Y., Souza G.M.	Circadian rhythms of sense and antisense transcription in sugarcane, a highly polyploid crop.	PLoS ONE	8(8)	e71847	2013		
39712	23940651	Moln?r I., Simkov? H., Leverington-Waite M., Goram R., Cseh A., Vr?na J., Farkas A., Dole?el J., Moln?r-L?ng M., Griffiths S.	Syntenic Relationships between the U and M Genomes of Aegilops, Wheat and the Model Species Brachypodium and Rice as Revealed by COS Markers.	PLoS ONE	8(8)	e70844	2013		
39713	23688619	Kovi M.R., Sablok G., Bai X., Wendell M., Rognli O.A., Yu H., Xing Y.	Expression patterns of photoperiod and temperature regulated heading date genes in Oryza sativa.	Comput Biol Chem	45	36-41	2013		
39714	23929654	Nayar S., Sharma R., Tyagi A.K., Kapoor S.	Functional delineation of rice MADS29 reveals its role in embryo and endosperm development by affecting hormone homeostasis.	J. Exp. Bot.	64(14)	4239-53	2013		
39715	23918962	Zhang G., Sakai H., Tokida T., Usui Y., Zhu C., Nakamura H., Yoshimoto M., Fukuoka M., Kobayashi K., Hasegawa T.	The effects of free-air CO2 enrichment (FACE) on carbon and nitrogen accumulation in grains of rice (Oryza sativa L.).	J. Exp. Bot.	64(11)	3179-88	2013		
39716	23934674	Zhang S., Wang Z., Ding D., Shu H.	Fuzzy Filtering with Randomly Occurring Parameter Uncertainties, Interval Delays, and Channel Fadings.	IEEE Trans Cybern			2013		
39717	23966593	Kim S.L., Choi M., Jung K.H., An G.	Analysis of the early-flowering mechanisms and generation of T-DNA tagging lines in Kitaake, a model rice cultivar.	J. Exp. Bot.	64(14)	4169-82	2013		
39718	23951332	Bouyioukos C., Moscou M.J., Champouret N., Hern?ndez-Pinz?n I., Ward E.R., Wulff B.B.	Characterisation and Analysis of the Aegilops sharonensis Transcriptome, a Wild Relative of Wheat in the Sitopsis Section.	PLoS ONE	8(8)	e72782	2013		
39719	23953845	Kim J., Lee Y., Lee S.Y., Kim Y.O., Chung Y.S., Park S.B.	Dietary patterns and functional disability in older Korean adults.	Maturitas	76(2)	160-4	2013		
39720	23966349	Cheng K., Ogle S.M., Parton W.J., Pan G.	Simulating Greenhouse Gas Mitigation Potentials for Chinese Croplands using the DAYCENT Ecosystem Model.	Glob Chang Biol	20(3)	948-62	2014		
39721	23904260	Elsanhoty R.M., Al-Turki AI., Ramadan M.F.	Prevalence of Genetically Modified Rice, Maize, and Soy in Saudi Food Products.	Appl. Biochem. Biotechnol.	171(4)	883-99	2013		
39722	23916648	Hu X., Wei B., Zhang B., Li H., Xu X., Jin Z., Tian Y.	Interaction between amylose and 1-butanol during 1-butanol-hydrochloric acid hydrolysis of normal rice starch.	Int. J. Biol. Macromol.	61C	329-332	2013		
39723	24280112	Kumar K., Kumar M., Kim S.R., Ryu H., Cho Y.G.	Insights into genomics of salt stress response in rice.	Rice (N Y)	6	27	2013		
39724	24095838	Song W., Sun H., Li J., Gong X., Huang S., Zhu X., Zhang Y., Xu G.	Auxin distribution is differentially affected by nitrate in roots of two rice cultivars differing in responsiveness to nitrogen.	Ann. Bot.	112(7)	1383-93	2013		
39725	24158434	Aune D., Norat T., Romundstad P., Vatten L.J.	Whole grain and refined grain consumption and the risk of type 2 diabetes: a systematic review and dose-response meta-analysis of cohort studies.	Eur. J. Epidemiol.	28(11)	845-58	2013		
39726	24103460	Guo B.Q., Cai S.Z., Yan C.H.	Reply to comments on neonatal hair-Hg and birth weight in China: Mercury in rice and fish.	Environ. Pollut.	184	655-6	2014		
39727	24165682	Gao L., Cao Y., Xia Z., Jiang G., Liu G., Zhang W., Zhai W.	Do transgenesis and marker-assisted backcross breeding produce substantially equivalent plants? - A comparative study of transgenic and backcross rice carrying bacterial blight resistant gene Xa21.	BMC Genomics	14(1)	738	2013		
39728	24056583	Yao S.L., Xu Y., Zhang Y.Y., Lu Y.H.	Black rice and anthocyanins induce inhibition of cholesterol absorption in vitro.	Food Funct	4(11)	1602-8	2013		
39729	24141028	Fu L., Yu X., An C.	Overexpression of constitutively active OsCPK10 increases Arabidopsis resistance against Pseudomonas syringae pv. tomato and rice resistance against Magnaporthe grisea.	Plant Physiol. Biochem.	73C	202-210	2013		
39730	24137159	Miyazaki N., Nakagawa A., Iwasaki K.	Life cycle of phytoreoviruses visualized by electron microscopy and tomography.	Front Microbiol	4	306	2013		
39731	24100624	Kang S.M., Khan A.L., You Y.H., Kim J.G., Kamran M., Lee I.J.	Gibberellin Production by newly isolated strain of Leifsonia soli SE134 and its potential for plant growth promotion.	J. Microbiol. Biotechnol.	24(1)	106-12	2014		
39732	24094587	D?rea JG.	Comments on neonatal hair-Hg and birth weight in China: Mercury in rice and fish.	Environ. Pollut.	184	654	2014		
39733	24101210	Shi J.J., Huang J.F., Zhang F.	Multi-year monitoring of paddy rice planting area in Northeast China using MODIS time series data.	J Zhejiang Univ Sci B	14(10)	934-46	2013		
39734	24021435	Shanmugavelan P., Kim S.Y., Kim J.B., Kim H.W., Cho S.M., Kim S.N., Kim S.Y., Cho Y.S., Kim H.R.	Evaluation of sugar content and composition in commonly consumed Korean vegetables, fruits, cereals, seed plants, and leaves by HPLC-ELSD.	Carbohydr. Res.	380	112-7	2013		
39735	24105436	Xie S., Chen J., Walsh B.	Genetic mapping of sterile genes with epistasis in backcross designs.	Heredity	112(2)	165-71	2014		
39736	24122336	Banerjee M., Raghavan P.S., Ballal A., Rajaram H., Apte S.K.	oxidative stress management in the filamentous, heterocystous, diazotrophic cyanobacterium, Anabaena PCC7120.	Photosyn. Res.	118	59 70	2013		
39737	24054657	Daneshvar Tarigh G., Shemirani F.	Magnetic multi-wall carbon nanotube nanocomposite as an adsorbent for preconcentration and determination of lead (II) and manganese (II) in various matrices.	Talanta	115	744-50	2013		
39738	23754555	Matsumura M., Sanada-Morimura S., Otuka A., Ohtsu R., Sakumoto S., Takeuchi H., Satoh M.	Insecticide susceptibilities in populations of two rice planthoppers, Nilaparvata lugens and Sogatella furcifera, immigrating into Japan in the period 2005-2012.	Pest Manag. Sci.	70(4)	615-22	2014		
39739	23805325	Kumari K., Muthamilarasan M., Misra G., Gupta S., Subramanian A., Parida S.K., Chattopadhyay D., Prasad M.	Development of eSSR-Markers in Setaria italica and Their Applicability in Studying Genetic Diversity, Cross-Transferability and Comparative Mapping in Millet and Non-Millet Species.	PLoS ONE	8(6)	e67742	2013		
39740	23810819	Sommella A., Deacon C., Norton G., Pigna M., Violante A., Meharg A.A.	Total arsenic, inorganic arsenic, and other elements concentrations in Italian rice grain varies with origin and type.	Environ. Pollut.	181	38-43	2013		
39741	23805204	Choudhary G., Ranjitkumar N., Surapaneni M., Deborah D.A., Vipparla A., Anuradha G., Siddiq E.A., Vemireddy L.R.	Molecular Genetic Diversity of Major Indian Rice Cultivars over Decadal Periods.	PLoS ONE	8(6)	e66197	2013		
39742	23733055	Macovei A., Tuteja N.	Different expression of miRNAs targeting helicases in rice in response to low and high dose rate gamma-ray treatments.	Plant Signal Behav	8(8)	e25128	2013		
39743	23930344	Khosravi-Boroujeni H., Sarrafzadegan N., Mohammadifard N., Sajjadi F., Maghroun M., Asgari S., Rafieian-Kopaei M., Azadbakht L.	White rice consumption and CVD risk factors among Iranian population.	J Health Popul Nutr	31(2)	252-61	2013		
39744	23853519	Nagano K., Sasaki K., Endo T.	Breeding of new rice cultivar 'Tohoku 194' with 'Sasanishiki'-type good eating quality of cooked rice.	Breed. Sci.	63(2)	233-7	2013		
39745	23748009	Wang Y., Li H., Wu X., Xu X., Jin Z., Tian Y.	Acid-thermal dextrin prepared from rice starch: Structure and encapsulation properties.	Int. J. Biol. Macromol.	60	178-80	2013		
39746	23825574	Zhang T., Liu L., Song Z., Ren G., Feng Y., Han X., Yang G.	Biogas production by co-digestion of goat manure with three crop residues.	PLoS ONE	8(6)	e66845	2013		
39747	23775636	Selim K.A., El-Beih AA., Abdel-Rahman TM., El-Diwany AI.	Biological Evaluation of Endophytic Fungus, Chaetomium globosum JN711454, as Potential Candidate for Improving Drug Discovery.	Cell Biochem. Biophys.	68(1)	67-82	2014		
39748	23841065	Zhang Y., Zheng R., Zhao J., Zhang Y., Wong P.K., Ma F.	Biosorption of zinc from aqueous solution using chemically treated rice husk.	Biomed Res Int	2013	365163	2013		
39749	23889819	Ma X., Shao C., Wang H., Jin Y., Meng Y.	Construction of small RNA-mediated gene regulatory networks in the roots of rice (Oryza sativa).	BMC Genomics	14	510	2013		
39751	23874903	Yang X., Yu X.Y., Li Y.F.	De novo Assembly and Characterization of the Barnyardgrass (Echinochloa crus-galli) Transcriptome Using Next-Generation Pyrosequencing.	PLoS ONE	8(7)	e69168	2013		
39752	23932255	Latif M.A., Omar M.Y., Rafii M.Y., Malek M.A., Tan S.G.	Evidence of sibling species between two host-associated populations of brown planthopper, N. lugens (st?l) (Homoptera: Delphacidea) complex based on morphology and host-plant relationship studies.	C. R. Biol.	336(7)	354-63	2013		
39753	23877038	Liu H., Zhang S., Hu X., Chen C.	Phytotoxicity and oxidative stress effect of 1-octyl-3-methylimidazolium chloride ionic liquid on rice seedlings.	Environ. Pollut.	181	242-9	2013		
39754	23911212	Daam M.A., Santos Pereira AC., Silva E., Caetano L., Cerejeira M.J.	Preliminary aquatic risk assessment of imidacloprid after application in an experimental rice plot.	Ecotoxicol. Environ. Saf.	97	78-85	2013		
39755	23872030	Beckett M.K., Elliott M.N., Clemens J.Q., Ewing B., Berry S.H.	Consequences of Interstitial Cystitis/Bladder Pain Symptoms on Women's Work Participation and Income: Results from a National Household Sample.	J. Urol.	191(1)	83-8	2014		
39756	23873639	Shen F., Tian L., Yuan H., Pang Y., Chen S., Zou D., Zhu B., Liu Y., Li X.	Improving the Mixing Performances of Rice Straw Anaerobic Digestion for Higher Biogas Production by Computational Fluid Dynamics (CFD) Simulation.	Appl. Biochem. Biotechnol.	171(3)	626-42	2013		
39757	23852132	Lim M.N., Lee S.E., Yim H.K., Kim J.H., Yoon I.S., Hwang Y.S.	Differential anoxic expression of sugar-regulated genes reveals diverse interactions between sugar and anaerobic signaling systems in rice.	Mol. Cells	36(2)	169-76	2013		
39758	23887081	Boudenot A., Pallu S., Toumi H., Loiseau Peres S., Dolleans E., Lespessailles E.	Tibial subchondral bone mineral density: sources of variability and reproducibility.	Osteoarthr. Cartil.	21(10)	1586-94	2013		
39759	23922843	Shangguan L., Han J., Kayesh E., Sun X., Zhang C., Pervaiz T., Wen X., Fang J.	Evaluation of genome sequencing quality in selected plant species using expressed sequence tags.	PLoS ONE	8(7)	e69890	2013		
39760	23857470	Oono Y., Kawahara Y., Yazawa T., Kanamori H., Kuramata M., Yamagata H., Hosokawa S., Minami H., Ishikawa S., Wu J., Antonio B., Handa H., Itoh T., Matsumoto T.	Diversity in the complexity of phosphate starvation transcriptomes among rice cultivars based on RNA-Seq profiles.	Plant Mol. Biol.	83(6)	523-37	2013		
39761	23849468	Zheng J., Chen K.H., Yan X., Chen S.J., Hu G.C., Peng X.W., Yuan J.G., Mai B.X., Yang Z.Y.	Heavy metals in food, house dust, and water from an e-waste recycling area in South China and the potential risk to human health.	Ecotoxicol. Environ. Saf.	96	205-12	2013		
39762	23898802	Kim S.B., Lee S.J., Lee J.H., Jung Y.R., Thapa L.P., Kim J.S., Um Y., Park C., Kim S.W.	Pretreatment of rice straw with combined process using dilute sulfuric acid and aqueous ammonia.	Biotechnol Biofuels	6(1)	109	2013		
39763	23935868	Yang Z., Huang D., Tang W., Zheng Y., Liang K., Cutler A.J., Wu W.	Mapping of Quantitative Trait Loci Underlying cold tolerance in Rice Seedlings via High-Throughput Sequencing of Pooled Extremes.	PLoS ONE	8(7)	e68433	2013		
39764	23906843	Liu Q., Liu L., Shin H.D., Chen R.R., Li J., Du G., Chen J.	Biosynthesis of homoeriodictyol from eriodictyol by flavone 3'-O-methyltransferase from recombinant Yarrowia lioplytica: Heterologous expression, biochemical characterization, and optimal transformation.	J. Biotechnol.	167(4)	472-8	2013		
39765	23647140	Hu J., Huang W., Huang Q., Qin X., Dan Z., Yao G., Zhu R., Zhu Y.	The mechanism of ORFH79 suppression with the artificial restorer fertility gene Mt-GRP162.	New Phytol.	199(1)	52-8	2013	_,_,RF1,GRP162	orfH79, ORFH79,atp6-orfH79,Rf1 (Rf-1), rf-1, PPR791, PPR8-1, Rf-1, Rf1, Rf-1A, Rf5, Rf1a, RF5, Rf5(t)*(Rf(t)*), RF1A, PPR6, PLS31, OsPLS31,OsGRP162
39766	23743425	Gu F., Wang W., Jing L., Jin Y.	Sulfite-formaldehyde pretreatment on rice straw for the improvement of enzymatic saccharification.	Bioresour. Technol.	142C	218-224	2013		
39767	23706591	Pucciariello C., Perata P.	Quiescence in rice submergence tolerance: an evolutionary hypothesis.	Trends Plant Sci.	18(7)	377-81	2013		
39768	23698631	Impa S.M., Morete M.J., Ismail A.M., Schulin R., Johnson-Beebout SE.	Zn uptake, translocation, and grain Zn loading in rice (Oryza sativa L.) genotypes selected for Zn deficiency tolerance and high grain Zn.	J. Exp. Bot.	64(10)	2739-51	2013		
39769	23664883	Sadumpati V., Kalambur M., Vudem D.R., Kirti P.B., Khareedu V.R.	Transgenic indica rice lines, expressing Brassica juncea Nonexpressor of pathogenesis-related genes 1 (BjNPR1), exhibit enhanced resistance to major pathogens.	J. Biotechnol.	166(3)	114-121	2013		
39770	23755056	Pourcel L., Moulin M., Fitzpatrick T.B.	Examining strategies to facilitate vitamin B1 biofortification of plants by genetic engineering.	Front Plant Sci	4	160	2013		
39771	23700971	Tiwari M., Sharma D., Dwivedi S., Singh M., Tripathi R.D., Trivedi P.K.	Expression in Arabidopsis and cellular localization reveal involvement of rice NRAMP, OsNRAMP1, in arsenic transport and tolerance.	Plant Cell Environ.	37(1)	140-52	2014	NRAMP1	OsNramp1, OsNRAMP1, OsNramp6
39772	23717314	Shelden M.C., Roessner U.	Advances in functional genomics for investigating salinity stress tolerance mechanisms in cereals.	Front Plant Sci	4	123	2013		
39773	23649897	Singh A.K., Sharma V., Pal A.K., Acharya V., Ahuja P.S.	Genome-Wide Organization and Expression Profiling of the NAC Transcription Factor Family in Potato (Solanum tuberosum L.).	DNA Res.	20(4)	403-23	2013		
39774	23664583	Rezaei M.K., Shobbar Z.S., Shahbazi M., Abedini R., Zare S.	Glutathione S-transferase (GST) family in barley: Identification of members, enzyme activity, and gene expression pattern.	J. Plant Physiol.	170(14)	1277-84	2013		
39775	23638881	Ghomi K., Rabiei B., Sabouri H., Sabouri A.	Mapping QTLs for traits related to salinity tolerance at seedling stage of rice (Oryza sativa L.): an agrigenomics study of an Iranian rice population.	OMICS	17(5)	242-51	2013		
39776	23715238	Liu N., Huo K., McDowell M.T., Zhao J., Cui Y.	Rice husks as a sustainable source of nanostructured silicon for high performance Li-ion battery anodes.	Sci Rep	3	1919	2013		
39777	0	Filho A.C., Araujo M.M., Gasparin E., de Avila A.L.	Sample size for evaluating the height and diameter of seedlings Cabralea canjerana [Dimensionamento amostral para avaliacao de altura e diametro de mudas de Cabralea canjerana]	Ciencia Rural	42	1204-1211	2012		
39778	0	Usman M., Kazmi I., Khaliq T., Ahmad A., Saleem M.F., Shabbir A.	Variability in water use, crop water productivity and profitability of rice and wheat in Rechna Doab, Punjab, Pakistan	Journal of Animal and Plant Sciences	22	998-1003	2012		
39779	0	Camargo E.R., Senseman S.A., Mccauley G.N., Guice J.B.	Rice (Oryza sativa L.) response and weed control from tank-mix applications of saflufenacil and imazethapyr	Crop Protection	31	94-98	2012		
39780	0	Ashfaq M., Khan A.S., Khan S.H.U., Ahmad R.	Association of various morphological traits with yield and genetic divergence in rice (Oryza sativa)	Int J Agric Biol	14	55-62	2012		
39781	0	Lidon F.J.C., Teixeira M., Ramalho J.C.	Decay of the Chloroplast Pool of Ascorbate Switches on the Oxidative Burst in UV-B-Irradiated Rice	Journal of Agronomy and Crop Science	198	130-144	2012		
39782	0	Akhtar S., Shoaib A.	Biosorption, solution to as (V) pollution	Journal of Animal and Plant Sciences	22	659-664	2012		
39783	0	Mahmood-ur-Rahman, Rao A.Q., Batool F., Azam S., Shahid A.A., Husnain T.	Transgene copy number and phenotypic variations in transgenic Basmati rice	Journal of Animal and Plant Sciences	22	1004-1013	2012		
39784	0	Mennan H., Ngouajio M., Sahin M., Isik D., Altop E.K.	Competitiveness of rice (Oryza sativa L.) cultivars against Echinochloa crus-galli (L.) Beauv. in water-seeded production systems	Crop Protection	41	1-9	2012		
39785	0	Saliman H.M., Sherief A.D. A., El-Tanash A.B.	Production of xylanase by Aspergillus niger and Trichoderma viride using some Agriculture Residues	International Journal of Agricultural Research	7	46-57	2012		
39786	0	Sadras V.O., Slafer G.A.	Environmental modulation of yield components in cereals: Heritabilities reveal a hierarchy of phenotypic plasticities	Field Crops Res.	127	215-224	2012		
39787	0	Asfaliza R., Rafii M.Y., Saleh G., Omar O., Puteh A.	Combining ability and heritability of selected rice varieties for grain quality traits	Aust J Crop Sci	6	1718-1723	2012		
39788	0	Abd-Elbary N.A., Eissa M.F.M., Youssef M.M.A.	Pathogenicity of the rice root nematode, Hirschmanniella oryzae to rice plants in relation to nematode reproduction, plant growth, grain yield and biochemical changes	Archives of Phytopathology and Plant Protection	45	2324-2334	2012		
39789	0	Kaosol T., Kiepukdee S., Towatana P.	Influence of nitrogen containing wastes addition on natural aerobic composting of rice straw	American Journal of Agricultural and Biological Science	7	121-128	2012		
39790	0	Chuan-Udom S., Chinsuwan W.	Effects of threshing unit feature on threshing unit losses for thai axial flow rice combine harvesters	AMA, Agricultural Mechanization in Asia, Africa and Latin America	43	66-71	2012		
39791	0	Ebrahemian M., Saeb K., Mahmoud A.	Ecophysiological effects of barnyardgras (Echinochloa crus galii) on rice CV. Shiroudi	Biosciences Biotechnology Research Asia	9	315-319	2012		
39792	0	Sanni K.A., Fawole I., Ogunbayo S.A., Tia D.D., Somado E.A., Futakuchi K., Sie M., Nwilene F.E., Guei R.G.	Multivariate analysis of diversity of landrace rice germplasm	Crop Sci.	52	494-504	2012		
39793	0	Sinniah U.R., Wahyuni S., Syahputra B.S.A., Gantait S.	A potential retardant for lodging resistance in direct seeded rice (Oryza sativa L.)	Canadian Journal of Plant Science	92	13-18	2012		
39794	22970587	Citak D., Tuzen M.	Cloud point extraction of copper, lead, cadmium, and iron using 2,6-diamino-4-phenyl-1,3,5-triazine and nonionic surfactant, and their flame atomic absorption spectrometric determination in water and canned food samples	J AOAC Int	95	1170-1175	2012		
39795	0	Vu H.T.T., Le D.D., Ismail A.M., Le H.H.	Marker-assisted backcrossing (MABC) for improved salinity tolerance in rice (Oryza sativa L.) to cope with climate change in Vietnam	Aust J Crop Sci	6	1649-1654	2012		
39796	0	Hosseini M., Houshmand S., Mohamadi S., Tarang A., Khodambashi M., Rahimsoroush H.	Detection of QTLs with main, epistatic and QTL??environment interaction effects for rice grain appearance quality traits using two populations of backcross inbred lines (BILs)	Field Crops Res.	135	97-106	2012		
39797	0	Morales M.A., Alvarez N., Diaz A., Kuoho C.Y., Rodriguez M.P., Seron T., Hernandez D.	Endothelium protector effect of Monascus purpureus, red yeast rice, standardized extract [Efecto protector endotelial vascular de un extracto estandarizado de Monascus purpureus]	Boletin Latinoamericano y del Caribe de Plantas Medicinales y Aromaticas	11	464-473	2012		
39798	0	Bassani T.P., Breda L.	Analysis of production costs, productivity and profitability on three technologies of cultivation of irrigated rice on the farm Sao Sebastiao, Querencia do Norte, PR	Custos e Agronegocio	8	100-130	2012		
39799	0	Abouzari A., Rouhi S., Eslami A., Kaviani B.	Comparison of the Effect of different soilless growing media on some growth characteristics of benjamin tree (Ficus benjamina)	Int J Agric Biol	14	985-988	2012		
39800	0	Van Delden S.H., Vos J., Stomph T.J., Brouwer G., Struik P.C.	Photoperiodism in Eragrostis tef: Analysis of ontogeny and morphology in response to photoperiod	European Journal of Agronomy	37	105-114	2012		
39801	0	Khaliq A., Matloob A.	Germination and growth response of rice and weeds to herbicides under aerobic conditions	Int J Agric Biol	14	775-780	2012		
39802	0	Soares F.C., Mello R.P., Peiter M.X., Belle R.A., Robaina A.D., Vivan G.A., Parizi A.R.C.	Water consumption by the lily culture grown on alternative substrates in protected conditions [Consumo de agua pela cultura do lirio, cultivado em substratos alternativos em condicoes de ambiente protegido]	Ciencia Rural	42	1001-1006	2012		
39803	0	Ismail B.S., Siddique A.B.	Allelopathic inhibition by Fimbristylis miliacea on the growth of the rice plants	Advances in Environmental Biology	6	2423-2427	2012		
39804	0	Jamali S., Pourjam E., Safai N.	Determining the relationship between population density of white tip nematode and rice yield	Journal of Agricultural Science and Technology	14	195-203	2012		
39805	0	Protasio T.P., Tonoli G.H.D., Guimaraes Jr., Bufalino L., Couto A.M., Trugilho P.F.	Canonical correlations between chemical and energetic characteristics of lignocellulosic wastes [Correlacoes canonicas entre as caracteristicas quimicas e energeticas de residuos lignocelulosicos]	Cerne	18	433-439	2012		
39806	0	Crusciol C.A.C., Toledo M.Z., Arf O., Cavariani C.	Water supplied by sprinkler irrigation system for upland rice seed production [Fornecimento de agua por meio de irrigacao por aspersao para producao de sementes de arroz de terras altas]	Bioscience Journal	28	34-42	2012		
39807	0	Gomes T.R., de Carvalho L.E., Freitas E.R., Nepomuceno R.C., Ellery E.A.C., Moreira R.H.R.	Rice bran in diets for piglets from 43 to 67 days of age [Farelo de arroz integral em racoes para leitoes de 43 a 67 dias de idade]	Ciencia Animal Brasileira	13	189-196	2012		
39808	0	Mandieh Najafabadi M.B., Peyvast G., Hassanpour Asil M., Olfati J.A., Rabiee M.	Mulching effects on the yield and quality of garlic as second crop in rice fields	International Journal of Plant Production	6	279-289	2012		
39809	0	Mishra A.	Intermittent irrigation enhances morphological and physiological efficiency of rice plants	Agriculture	58	121-130	2012		
39810	0	Cao Quoc N., Vromant N., Tran Thanh B., Ollevier F.	Investigation of the predation potential of different fish species on brown planthopper (Nilaparvata lugens (Stal)) in experimental rice-fish aquariums and tanks	Crop Protection	38	95-102	2012		
39811	0	Giuberti G., Gallo A., Cerioli C., Masoero F.	In vitro starch digestion and predicted glycemic index of cereal grains commonly utilized in pig nutrition	Anim. Feed Sci. Technol.	174	163-173	2012		
39812	0	Sabouri A., Rabiei B., Toorchi M., Aharizad S., Moumeni A.	Mapping quantitative trait loci (QTL) associated with cooking quality in rice (Oryza sativa L.)	Aust J Crop Sci	6	808-814	2012		
39813	0	Mondal A., Dutta S., Nandi S., Das S., Chaudhuri S.	Changes in defence-related enzymes in rice responding to challenges by Rhizoctonia solani	Archives of Phytopathology and Plant Protection	45	1840-1851	2012		
39814	0	Dwivedi B.S., Singh V.K., Shukla A.K., Meena M.C.	Optimizing dry and wet tillage for rice on a Gangetic alluvial soil: Effect on soil characteristics, water use efficiency and productivity of the rice-wheat system	European Journal of Agronomy	43	155-165	2012		
39815	0	Tajul M.I., Motoyama T., Hatanaka A., Sariah M., Osada H.	Green-odour compounds have antifungal activity against the rice blast fungus Magnaporthe oryzae	European Journal of Plant Pathology	132	91-100	2012		
39816	0	Aye S.S., Matsumoto M.	Pathogenicity and symptom expressions of Rhizoctonia solani, R. oryzae and R. oryzae-sativae to some commercial cultivars of rice in Myanmar	Archives of Phytopathology and Plant Protection	45	1991-1996	2012		
39817	0	Kalmeshwer Gouda P., Mohan Kumar Varma C., Saikumar S., Kiran B., Shenoy V., Shashidhar H.E.	Direct selection for grain yield under moisture stress in Oryza sativa cv. IR58025B ?? Oryza meridionalis population	Crop Sci.	52	644-653	2012		
39818	0	Nevame A.Y.M., Andrew E., Sisong Z., Demba S., Feng H., Wenchuang H., Guosheng X., Deming J.	Identification of interspecific grain yield heterosis between two cultivated rice species Oryza sativa L. and Oryza glaberrima Steud	Aust J Crop Sci	6	1558-1564	2012		
39819	0	Yao F., Huang J., Cui K., Nie L., Xiang J., Liu X., Wu W., Chen M., Peng S.	Agronomic performance of high-yielding rice variety grown under alternate wetting and drying irrigation	Field Crops Res.	126	16-22	2012		
39820	0	Hu S.K., Zeng D.L., Su Y., Shi Z-.Y., Ye W.J., Dong G.J., Zhu L., Hu J., Qian Q., Guo L.B.	QTL analysis of nitrogen content of plant shoot under two nitrogen conditions in rice (Oryza sativa L.)	Aust J Crop Sci	6	1737-1744	2012		
39821	0	Ding Z.S., Zhou B.Y., Sun X.F., Zhao M.	High Light Tolerance is Enhanced by Overexpressed PEPC in Rice Under Drought Stress	Acta Agronomica Sinica	38	285-292	2012		
39822	0	Atera E.A., Itoh K., Azuma T., Ishii T.	Response of NERICA rice to Striga hermonthica infections in western Kenya	Int J Agric Biol	14	271-275	2012		
39823	0	Wei D., Cui K., Pan J., Wang Q., Wang K., Zhang X., Xiang J., Nie L., Huang J.	Identification of quantitative trait locifor grain yield and its componentsin response to lownitrogen applicationin rice	Aust J Crop Sci	6	986-994	2012		
39824	0	Rathi S., Sarma R.N.	Microsatellite diversity in indigenous glutinous rice landraces of Assam	Indian J. Biotechnol.	11	23-29	2012		
39825	0	Chaubey M.K.	Fumigant toxicity of essential oils and pure compounds against Sitophilus oryzae L. (Coleoptera: Curculionidae)	Biological Agriculture and Horticulture	28	111-119	2012		
39826	0	Aye S.S., Matsumoto M.	Characterisation of antagonistic soil microbes against Rhizoctonia spp. and Sclerotium hydrophilum	Archives of Phytopathology and Plant Protection	45	2465-2473	2012		
39827	0	Raghuveera Rao P., Sailaja B., Desiraju S., Nageswara Rao D., Voleti S.R., Satyanarayana Reddy P., Sudarsana Rao G.V.	Variable radiation use efficiency in rice cultures grown at different locations	Indian Journal of Plant Physiology	17	57-60	2012		
39828	0	Yang Y.Q., Yang M., Li M.H., Zhou E.X.	Cloning and functional analysis of an endo-PG-encoding gene Rrspg1 of Rhizoctonia solani, the causal agent of rice sheath blight	Canadian Journal of Plant Pathology	34	436-447	2012		
39829	0	Wang W., Lu J., Ren T., Li X., Su W., Lu M.	Evaluating regional mean optimal nitrogen rates in combination with indigenous nitrogen supply for rice production	Field Crops Res.	137	37-48	2012		
39830	0	Joe M.M., Islam M.R., Karthikeyan B., Bradeepa K., Sivakumaar P.K., Sa T.	Resistance responses of rice to rice blast fungus after seed treatment with the endophytic Achromobacter xylosoxidans AUM54 strains	Crop Protection	42	141-148	2012		
39831	0	Kumari P., Ahuja U., Maheswaran M., Chawla V., Battan K.R.	Variability pattern of intact and split grains in rils' of cross bas 370 x asd 16	Ann Biol	28	41-44	2012		
39832	0	Singh A.P., Singh A.K., Chaturvedi S., Singh S., Mishra O.P.	Bio-efficacy of sulfonylurea herbicides on mixed weed flora in transplanted rice	Indian Journal of Agricultural Research	46	9-15	2012		
39833	0	Chen Y., Zhang A.F., Wang W.X., Zhang Y., Gao T.C.	Baseline sensitivity and efficacy of thifluzamide in Rhizoctonia solani	Annals of Applied Biology	161	247-254	2012		
39834	0	Singh A.K.	Probable Agricultural Biodiversity Heritage Sites in India: XIII. Lower Gangetic Plain or delta region	Asian Agrihist	16	237-260	2012		
39835	0	Rao D.N., Voleti S.R., Subrahmanyam D., Rao P.R., Ramesha M.S.	Heterosis for antioxidant enzymes in rice hybrid under abiotic stress conditions	Indian Journal of Plant Physiology	17	175-178	2012		
39836	0	Sudhakar P., Latha P., Babu P.R., Sujatha K., Reddy K.R.	Identification of thermotolerant rice genotypes at seedling stage using tir technique in pursuit of global warming	Indian Journal of Plant Physiology	17	185-188	2012		
39837	0	Bijay-Singh, Varinderpal-Singh, Yadvinder-Singh, Thind H.S., Kumar A., Gupta R.K., Kaul A., Vashistha M.	Fixed-time adjustable dose site-specific fertilizer nitrogen management in transplanted irrigated rice (Oryza sativa L.) in South Asia	Field Crops Res.	126	63-69	2012		
39838	0	You-Xin Y., Yan-Hong L., Jing-Fei T., Qasim S.M., Zhi-Xiong C., Lan W., Jin-Quan L., Xiang-Dong L., Yong-Gen L.	Wide-compatibility gene S 5 n exploited by functional molecular markers and its effect on fertility of intersubspecific rice hybrids	Crop Sci.	52	669-675	2012		
39839	0	Rout S., Thatoi H.N., Tewari S.N.	Performance of aqueous extract of Aegle marmelos based Amaext-a, an antifungal product against Pyricularia grisea causing blast disease of rice	Archives of Phytopathology and Plant Protection	45	2507-2518	2012		
39840	0	Qu H., Tao H., Tao Y., Liu M., Shen K., Lin S.	Ground cover rice production system increases yield and nitrogen recovery efficiency	Agron J	104	1399-1407	2012		
39841	0	Yang Y.C., Ni D.H., Song F.S., Li L., Lu X.Z., Li Z.F., Yang J.B.	Identification of QTLs for Rice Starch RVA Profile Properties in Different Ecological Sites	Acta Agronomica Sinica	38	264-274	2012		
39842	0	Nath D.J., Baruah R., Ozah B., Gogoi D., Barooah R.C., Borah D.K.	Potentiality of diverse organic inputs with low chemical fertilizer on microbial biomass carbon, soil enzymes and crop yield in paddy soil	Indian Journal of Agricultural Research	46	249-255	2012		
39843	0	Grace P.R., Antle J., Aggarwal P.K., Ogle S., Paustian K., Basso B.	Soil carbon sequestration and associated economic costs for farming systems of the Indo-Gangetic Plain: A meta-analysis	Agriculture, Ecosystems and Environment	146	137-146	2012		
39844	0	Tanaka A., Toriyama K., Kobayashi K.	Nitrogen supply via internal nutrient cycling of residues and weeds in lowland rice farming	Field Crops Res.	137	251-260	2012		
39845	0	Wang Y., Xin H.S., Li Y.Z., Zhang W.W., Xia K., Wang Z.B., Li M., Zhang Y.G.	The effects of different processing methods on the estimated nutritional value of rice bran according to the NRC-2001 model 5or DVE/OEB system 6	J. Anim. Feed Sci.	21	503-520	2012		
39846	0	Sharma V., Prabhakara J., Kachroo D., Samanta A.	Influence of puddling intensity and organic amendments on water productivity under SRI and conventional transplanting of rice and their residual effect on succeeding wheat crop	Indian Journal of Agricultural Research	46	75-79	2012		
39847	0	Lou Y., Zhou W., Ren L.	Elevated UV-B radiation increased CH 4 emission in transgenic rice from a paddy soil	Agriculture, Ecosystems and Environment	151	16-20	2012		
39848	0	Mishra R., Sharma H.K., Sengar G.	Quantification of rice bran oil in oil blends	Grasas y Aceites	63	53-60	2012		
39849	0	Patni B., Guru S.K.	Morphophysiological and biochemical parameters associated with competitive ability of rice genotypes against weeds	Indian Journal of Plant Physiology	17	215-223	2012		
39850	0	Datt I., Mehla B.S., Goyat B., Kaliramana R.S.	Variability and Correlation Coefficient Analysis of plant Height, Yield and Yield Components in Rice (Oryza sativa L.)	Ann Biol	28	45-52	2012		
39851	0	Singh U.B., Sahu A., Singh R.K., Singh D.P., Meena K.K., Srivastava J.S., Renu, Manna M.C.	Evaluation of biocontrol potential of Arthrobotrys oligospora against Meloidogyne graminicola and Rhizoctonia solani in Rice (Oryza sativa L.)	Biological Control	60	262-270	2012		
39852	0	Saranya Devi E., Vijayendra S.V.N., Shamala T.R.	Exploration of rice bran, an agro-industry residue, for the production of intra- and extra-cellular polymers by Sinorhizobium meliloti MTCC 100	Biocatalysis and Agricultural Biotechnology	1	80-84	2012		
39853	0	Sharma R., Modgil M., Sharma P., Saini U.	Agrobacterium-mediated transfer of chitinase gene in apple (Malus ?? domestica Borkh.) rootstock MM106	Indian Journal of Horticulture	69	1-6	2012		
39854	0	Huang Y., Chen D.C., Zhou W., Ren W.J., Yang W.Y.	Variability and correlation analysis between area of single seedling occupancy (ASSO) and rice individual characters under non-uniformity spatial distribution	Aust J Crop Sci	6	1606-1612	2012		
39855	0	Huang M., Zou Y., Jiang P., Xia B., Feng Y., Cheng Z., Mo Y.	Effect of tillage on soil and crop properties of wet-seeded flooded rice	Field Crops Res.	129	28-38	2012		
39856	0	Nayak A.K., Gangwar B., Shukla A.K., Mazumdar S.P., Kumar A., Raja R., Kumar A., Kumar V., Rai P.K., Mohan U.	Long-term effect of different integrated nutrient management on soil organic carbon and its fractions and sustainability of rice-wheat system in Indo Gangetic Plains of India	Field Crops Res.	127	129-139	2012		
39857	0	Raja R., Ravisankar N., Chaudhuri S.G., Ambast S.K., Chand S., Din M., Meena B., Subramani T., Ahmed Z.	Effect of supplemental irrigation on yield and water productivity of dry season crops in Andaman and Nicobar Islands	Indian Journal of Agricultural Sciences	82	122-126	2012		
39858	0	Suji K.K., Prince K.S.J., Mankhar P.S., Kanagaraj P., Poornima R., Amutha K., Kavitha S., Biji K.R., Gomez S.M., Babu R.C.	Evaluation of rice (Oryza sativa L.) near iso-genic lines with root QTLs for plant production and root traits in rainfed target populations of environment	Field Crops Res.	137	89-96	2012		
39859	0	Noda H., Watanabe K., Kawai S., Yukuhiro F., Miyoshi T., Tomizawa M., Koizumi Y., Nikoh N., Fukatsu T.	Bacteriome-associated endosymbionts of the green rice leafhopper Nephotettix cincticeps (Hemiptera: Cicadellidae)	Appl. Entomol. Zool. (Jpn.)	47	217-225	2012		
39860	0	Cha-Um S., Singh H.P., Samphumphuang T., Kirdmanee C.	Calcium-alleviated salt tolerance in indica rice (Oryza sativa L. Spp. indica): Physiological and morphological changes	Aust J Crop Sci	6	176-182	2012		
39861	0	Qiao J., Yang L., Yan T., Xue F., Zhao D.	Nitrogen fertilizer reduction in rice production for two consecutive years in the Taihu Lake area	Agriculture, Ecosystems and Environment	146	103-112	2012		
39862	0	Khatun R., Shahinul Islam S.M., Ara I., Tuteja N., Bari M.A.	Effect of cold pretreatment and different media in improving anther culture response in rice (Oryza sativa L.) in Bangladesh	Indian J. Biotechnol.	11	458-463	2012		
39863	0	Seenivasan N., David P.M.M., Vivekanandan P., Samiyappan R.	Biological control of rice root-knot nematode, Meloidogyne graminicola through mixture of Pseudomonas fluorescens strains	Biocontrol Sci Technol	22	611-632	2012		
39864	0	Bhadru D., Lokanadha Reddy D., Ramesha M.S.	Studies on combining ability for development of new hybrids in rice	Indian Journal of Agricultural Research	46	97-109	2012		
39865	0	Kundu S., Bothra A., Tisa L.S., Sen A.	In silico analysis reveals the role of horizontally transferred genes (HGTS) in shaping the pathogenicity of xanthomonas	Indian J. Biotechnol.	11	404-411	2012		
39866	0	Huang D.R., Chen J., Lai F.X., Liu G.J., Zhuang J.Y.	Analysis of Quantitative Trait Loci for Resistance to Brown Planthopper in Dongxiang Wild Rice (Oryza rufipogon Griff.)	Acta Agronomica Sinica	38	210-214	2012		
39867	0	Salgotra R.K., Gupta B.B., Ahmed M.I.	Characterization of thermo-sensitive genic male sterility (TGMS) rice genotypes: (Oryza sativa L.) at different altitudes	Aust J Crop Sci	6	957-962	2012		
39868	0	Hou Y., Hou G., Qi H., Chen C., Li X., Zhao M., Dong S.	Analysis of photothermic resource use efficiency and potential increases in crop yields in high-yielding regions of eastern Asia	Aust J Crop Sci	6	784-792	2012		
39869	0	Boriboonkaset T., Theerawitaya C., Pichakum A., Cha-um S., Takabe T., Kirdmanee C.	Expression levels of some starch metabolism related genes in flag leaf of two contrasting rice genotypes exposed to salt stress	Aust J Crop Sci	6	1579-1586	2012		
39870	0	Matsushita K., Iida S., Ideta O., Sunohara Y., Ishii T.	Use of a universal testing machine for quantitative evaluation of the shattering habit of rice (Oryza sativa L.) for whole-crop silage use	Grassland Science	58	170-173	2012		
39871	0	Wang F., Ye C., Zhu L., Nie L., Cui K., Peng S., Lin Y., Huang J.	Yield differences between Bt transgenic rice lines and their non-Bt counterparts, and its possible mechanism	Field Crops Res.	126	8-15	2012		
39872	0	Feng F., Xu X., Du X., Tong H., Luo L., Mei H.	Assessment of drought resistance among wild rice accessions using a protocol based on single-tiller propagation and PVC-tube cultivation	Aust J Crop Sci	6	1204-1211	2012		
39873	0	Liu H., Jia S., Shen D., Liu J., Li J., Zhao H., Han S., Wang Y.	Four AUXIN RESPONSE FACTOR genes downregulated by microRNA167 are associated with growth and development in Oryza sativa	Functional Plant Biology	39	736-744	2012		
39874	0	Kocherla P., Aparna K., Lakshmi D.N.	Development and evaluation of RTE (Ready to Eat) extruded snack using egg albumin powder and cheese powder	Agricultural Engineering International: CIGR Journal	14	179-187	2012		
39875	0	Lata K., Singh K.P., Nandal D.P., Om H., Thakral S.K.	Yield, Economics and Nutrient uptake of wheat as influenced by organic manures and their residual effect on rice in Rice-wheat system	Annals of Agri Bio Research	17	51-55	2012		
39876	0	Juliano B.O., Tua?o A.P.P., Monteroso D.N., Aoki N., Mestres C., Duldulao J.B.A., Bergonio K.B.	Replacement of acetate with ammonium buffer to determine apparent amylose content of milled rice	Cereal Foods World	57	14-19	2012		
39877	0	Motobayashi T., Genka M., Phong T.K., Watanabe H.	Effects of formulation and treatment method of imidacloprid in nursery boxes on aquatic insects inhabiting rice paddy fields	Japanese Journal of Applied Entomology and Zoology	56	169-172	2012		
39878	0	Chen S., Zhang X., Zhang G., Wang D., Xu C.	grain yield and dry matter accumulation response to enhanced panicle nitrogen application under different planting methods (Oryza sativa L.)	Aust J Crop Sci	6	1630-1636	2012		
39879	0	Jha A.N., Srivastava C., Dhar S.	Resistance in wheat genotypes to rice (Oryza sativa) weevil (Sitophilus oryzae)	Indian Journal of Agricultural Sciences	82	1093-1095	2012		
39880	0	Chang J., Duan X., Cui J., Xue W., Zhang Q.	Differential molecular responses of aphid-sensitive and aphid-resistant sorghum lines to aphid infestation	Arthropod Plant Interact	6	113-120	2012		
39881	0	Dadhich S.K., Pandey A.K., Prasanna R., Nain L., Kaushik B.D.	Optimizing crop residue-based composts for enhancing soil fertility and crop yield of rice	Indian Journal of Agricultural Sciences	82	85-88	2012		
39882	0	El-Hendawy S., Sone C., Ito O., Sakagami J.I.	Differential growth response of rice genotypes based on quiescence mechanism under flash flooding stress	Aust J Crop Sci	6	1587-1597	2012		
39883	0	Devi H.M., Basha S.T., Eswara Reddy N.P., Bhaskar Reddy B.V.	Biological control of sclerotium oryzae (Cattanoe) causing stem rot of rice (Oryza sativa L.)	Biopesticides International	8	71-81	2012		
39884	0	Lal M., Singh D.P.	Genotype x environment interaction in rice (Oryza Sativa l.)	Ann Biol	28	53-55	2012		
39885	0	Beena R., Thandapani V., Chandrababu R.	Physio-morphological and biochemical characterization of selected recombinant inbred lines of rice for drought resistance	Indian Journal of Plant Physiology	17	189-193	2012		
39886	0	Gamalath N.S., Tufail M., Sharma P.N., Mori N., Takeda M., Nakamura C.	Differential expression of vitellogenin mRNA and protein in response to rice resistance genes in two strains of Nilaparvata lugens (Hemiptera: Delphacidae) with different levels of virulence	Appl. Entomol. Zool. (Jpn.)	47	9-16	2012		
39887	0	Pu L., Xie G., Ji C., Ling B., Zhang M., Xu D., Zhou G.	Transmission characteristics of Southern rice black-streaked dwarf virus by rice planthoppers	Crop Protection	41	71-76	2012		
39888	0	Subudhi P.K., Parco A., Singh P.K., DeLeon T., Karan R., Biradar H., Cohn M.A., Brar D.S., Sasaki T.	Genetic architecture of seed dormancy in U.S. weedy rice in different genetic backgrounds	Crop Sci.	52	2564-2575	2012		
39889	0	Yonemaru J.I., Morita S.	Image analysis of grain shape to evaluate the effects of high temperatures on grain filling of rice, Oryza sativa L.	Field Crops Res.	137	268-271	2012		
39890	0	Zhang T., Li L., Hu F., Zhao X., Fu B., Yang D.	Analysis of ESTs from a Normalized cDNA Library of the Rhizome Tip of Oryza longistaminata	Journal of Plant Biology	55	33-42	2012		
39891	0	Ramya B., Saravanan K., Kumar P.S.	Genetic parameters of variability, correlation and path coefficient studies for grain yield and other yield attributes traits in rice (Oryza Sativa L.)	Plant Archives	12	711-715	2012		
39892	0	Wang Q., Zhang L., Zhang J., Shen Q., Ran W., Huang Q.	Effects of compost on the chemical composition of SOM in density and aggregate fractions from rice-wheat cropping systems as shown by solid-state 13C-NMR spectroscopy	Journal of Plant Nutrition and Soil Science	175	920-930	2012		
39893	0	Bashir K., Ishimaru Y., Nishizawa N.K.	Molecular mechanisms of zinc uptake and translocation in rice	Plant Soil	361	189-201	2012		
39894	0	Anandan A., Arunachalam P.	Relative proportion of antioxidative enzyme activity in locally grown Indian rice cultivars (Oryza sativa L.) under submergence condition	J Plant Interact	7	183-192	2012		
39895	0	Nanthakumar M., Jhansi Lakshmi V., Shashi Bhushan V., Balachandran S.M., Mohan M.	Decrease of rice plant resistance and induction of hormesis and carboxylesterase titre in brown planthopper, Nilaparvata lugens (St?l) by xenobiotics	Pestic Biochem Physiol	102	146-152	2012		
39896	0	Ali A., Ahmad F., Biondi A., Wang Y., Desneux N.	Potential for using Datura alba leaf extracts against two major stored grain pests, the khapra beetle Trogoderma granarium and the rice weevil Sitophillus oryzae	J Pest Sci (2004)	85	359-366	2012		
39897	0	Niones J.M., Suralta R.R., Inukai Y., Yamauchi A.	Field evaluation on functional roles of root plastic responses on dry matter production and grain yield of rice under cycles of transient soil moisture stresses using chromosome segment substitution lines	Plant Soil	359	107-120	2012		
39898	23413968	Wu Y.P., Li J., Zhao J.L., Su T.J., Luo A.R., Fan R.J., Chen M.C., Wu C.S., Zhu C.D.	The complete mitochondrial genome of the rice moth, corcyra cephalonica	Journal of Insect Science	12	72	2012		
39900	0	Khan M.R., Zaidi B., Haque Z.	Nematicides control rice root-knot, caused by Meloidogyne graminicola	Phytopathol. Mediterr.	51	298-306	2012		
39901	0	Deng J., Zhou Z., Zheng X., Liu C., Yao Z., Xie B., Cui F., Han S., Zhu J.	Annual emissions of nitrous oxide and nitric oxide from rice-wheat rotation and vegetable fields: A case study in the Tai-Lake region, China	Plant Soil	360	37-53	2012		
39902	0	Ladhalakshmi D., Laha G.S., Singh R., Karthikeyan A., Mangrauthia S.K., Sundaram R.M., Thukkaiyannan P., Viraktamath B.C.	Isolation and characterization of Ustilaginoidea virens and survey of false smut disease of rice in India	Phytoparasitica	40	171-176	2012		
39903	0	Kato A., Miyake T., Nishigata K., Tateishi H., Teraoka T., Arie T.	Use of fluorescent proteins to visualize interactions between the Bakanae disease pathogen Gibberella fujikuroi and the biocontrol agent Talaromyces sp. KNB-422	Journal of General Plant Pathology	78	54-61	2012		
39904	0	Patil V.A., Vashi R.D., Patil P.P., Shinde D.A.	Line ?? tester analysis in rice (Oryza Sativa L.)	Plant Archives	12	463-469	2012		
39905	0	Benbi D.K., Toor A.S., Kumar S.	Management of organic amendments in rice-wheat cropping system determines the pool where carbon is sequestered	Plant Soil	360	145-162	2012		
39906	0	Jiang L.B., Zhao K.F., Wang D.J., Wu J.C.	Effects of different treatment methods of the fungicide jinggangmycin on reproduction and vitellogenin gene (Nlvg) expression in the brown planthopper Nilaparvata lugens St?l (Hemiptera:Delphacidae)	Pestic Biochem Physiol	102	51-55	2012		
39907	0	Venkat Reddy A., Sunitha Devi R., Reddy D.V.V.	Evaluation of Cyazypyr - A new molecule against major insect pests of rice	Pestology	36	27-30	2012		
39908	0	Kiran Kumar R.	Bio-efficacy of acaricides against leafmite, oligonychus oryzae (hirst) (acari?a: Tetranychidae) on rice oryza sativa l	Pestology	36	43-46	2012		
39909	0	Lai Y., Xu B., He L., Lin M., Cao L., Wu Y., Mou S., He S.	Cadmium uptake by and translocation within rice (Oryza Sativa L.) seedlings as affected by iron plaque and Fe2O3	Pak J Bot	44	1557-1561	2012		
39910	0	Zhao X., Zhang T., Huang L., Wu H., Hu F., Zhang F., Zhu L., Fu B.	Comparative Metabolite Profiling and Hormone Analysis of Perennial and Annual Rice	Journal of Plant Biology	55	73-80	2012		
39911	0	Liu J.L., Yang X., Chen X., Wu J.C.	Suppression of fecundity, Nlvg gene expression and vitellin content in Nilaparvata lugens St?l (Hemiptera: Delphacidae) adult females exposed to indoxacarb and chlorantraniliprole	Pestic Biochem Physiol	104	206-211	2012		
39912	0	Goswami P., Verma N., Gyanandra K.M., Singh M.D.	Development of organic farming package for scented rice-potato cropping system	Plant Archives	12	769-773	2012		
39913	0	Wei D., Cui K., Ye G., Pan J., Xiang J., Huang J., Nie L.	QTL mapping for nitrogen-use efficiency and nitrogen-deficiency tolerance traits in rice	Plant Soil	359	281-295	2012		
39914	0	Zhang J., Cai Z., Yang W., Zhu T., Yu Y., Yan X., Jia Z.	Long-term field fertilization affects soil nitrogen transformations in a rice-wheat-rotation cropping system	Journal of Plant Nutrition and Soil Science	175	939-946	2012		
39915	0	Malviya M.K., Sharma A., Pandey A., Rinu K., Sati P., Palni L.M.S.	Bacillus subtilis NRRL B-30408: A potential inoculant for crops grown under rainfed conditions in the mountains	Journal of Soil Science and Plant Nutrition	12	811- 824	2012		
39917	0	Wang J., Pan X., Liu Y., Zhang X., Xiong Z.	Effects of biochar amendment in two soils on greenhouse gas emissions and crop production	Plant Soil	360	287-298	2012		
39918	0	Hadi A., Fatah L., Affandi D.N., Bakar R.A., Inubushi K.	Population and genetic diversities of bacteria related to nitrous oxide and methane in peat soils of South Kalimantan, Indonesia	Malaysian Journal of Soil Science	16	121-135	2012		
39919	0	Phattarakul N., Rerkasem B., Li L.J., Wu L.H., Zou C.Q., Ram H., Sohu V.S., Kang B.S., Surek H., Kalayci M., Yazici A., Zhang F.S., Cakmak I.	Biofortification of rice grain with zinc through zinc fertilization in different countries	Plant Soil	361	131-141	2012		
39920	0	Ogata T., Kida Y., Arai T., Kishi Y., Manago Y., Murai M., Matsushita Y.	Overexpression of tobacco ethylene response factor NtERF3 gene and its homologues from tobacco and rice induces hypersensitive response-like cell death in tobacco	Journal of General Plant Pathology	78	8-17	2012		
39921	0	Singh A., Panda S.N.	Integrated salt and water balance modeling for the management of waterlogging and salinization. II: Application of SAHYSMOD	Journal of Irrigation and Drainage Engineering	138	964-971	2012		
39922	0	Liu D., Lin Y., Wang X.	Effects of lanthanum on growth, element uptake, and oxidative stress in rice seedlings	Journal of Plant Nutrition and Soil Science	175	907-911	2012		
39923	0	Rao G.B.S., Wahab K.	Screening of greengram varieties for cauvery deltaic zone of Tamil Nadu, India	Plant Archives	12	967-968	2012		
39924	0	Kiran Kumar R., Venkateshulu B., Veeranna R.	Efficacy of imidacloprid 0.3% GR against brown plant hopper (BPH) nilaparvata lugens (STAL) (cicadellidae: Homoptera) on paddy oryza sativa l	Pestology	36	44-47	2012		
39925	0	Yang C., Yang X., Fu Q., Xu K., Lu B.R.	Limited divergence among populations of rice striped stem borer in southeast China caused by gene flow: Implications for resistance management	J Syst Evol	50	443-453	2012		
39926	0	Garcia M.C., de Toledo Benassi M., Soares M.S.	Physicochemical and sensory profile of rice bran roasted in microwave [Perfil fisico-quimico e sensorial de farelos de arroz torrados em micro-ondas]	Ciencia e Tecnologia de Alimentos	32	754-761	2012		
39927	0	Srivastava S., Dubey R.S.	Nitric oxide alleviates manganese toxicity by preventing oxidative stress in excised rice leaves	Acta Physiologiae Plantarum	34	819-825	2012		
39928	0	LI J.J., XIAO Y.L., XIAO G.Y.	Selection of Submergence Tolerant Homozygous Line by STS Marker and Twice Submergence Stress	Journal of Integrative Agriculture	11	1940-1947	2012		
39929	0	Setyaningsih W., Palma M., Barroso C.G.	A new microwave-assisted extraction method for melatonin determination in rice grains	J. Cereal Sci.	56	340-346	2012		
39930	0	Jeon W.T.	Effects of nitrogen levels on growth, yield and nitrogen uptake of fiber-rich cultivar, Goami 2	Afr. J. Biotechnol.	11	131-137	2012		
39931	0	Sharifi P.	Graphic analysis of salinity tolerance traits of rice (Oryza sativa L.) using biplot method	Cereal Res. Commun.	40	342-350	2012		
39932	0	ZHU Y.J., HU G.P., LIU B., XIE H.A., ZHENG X.F., ZHANG J.F.	Using Phospholipid Fatty Acid Technique to Analysis the Rhizosphere Specific Microbial Community of Seven Hybrid Rice Cultivars	Journal of Integrative Agriculture	11	1817-1827	2012		
39933	22611233	Cao H., Zhang J., Xu J., Xu J., Ye J., Yun Z., Xu Q., Deng X.	Comprehending crystalline ??-carotene accumulation by comparing engineered cell models and the natural carotenoid-rich system of citrus	J. Exp. Bot.	63	4403-4417	2012		
39934	22306463	Bailey G.D., Hyun J.K., Mitra A.K., Kingston R.L.	A structural model for the generation of continuous curvature on the surface of a retroviral capsid	J. Mol. Biol.	417	212-223	2012		
39935	0	Shimono H., Kumagai E., Kiminarita N., Ito M., Takahashi Y., Sasaki N., Horai K.	Interactive effects of soil salinity and temperature on vegetative growth of rice after flooded by Tsunami 11 March 2011	Japanese Journal of Crop Science	81	441-448	2012		
39936	0	Heo S.H., Han K.B., Lee Y.J., Kim J.H., Yoon K.H., Han M.D., Shin K.S., Kim W.J.	Recombinant human granulocyte macrophage colony-stimulating factor (rhGM-CSF) could accelerate burn wound healing in hamster skin	Animal Cells Syst (Seoul)	16	207-214	2012		
39937	0	Zhao L., Liu T., An X., Gu R.	Evolution and expression analysis of the ??-glucosidase (GLU) encoding gene subfamily in maize	Genes and Genomics	34	179-187	2012		
39938	0	Kikuchi R., Kawahigashi H., Oshima M., Ando T., Handa H.	The differential expression of HvCO9, a member of the CONSTANS-like gene family, contributes to the control of flowering under short-day conditions in barley	J. Exp. Bot.	63	773-784	2012		
39939	0	Gupta K., Gupta B., Ghosh B., Sengupta D.N.	Spermidine and abscisic acid-mediated phosphorylation of a cytoplasmic protein from rice root in response to salinity stress	Acta Physiologiae Plantarum	34	29-40	2012		
39940	22349012	Cao X., Zhou J., Gong X., Zhao G., Jia J., Qi X.	Identification and Validation of a Major Quantitative Trait Locus for Slow-rusting Resistance to Stripe Rust in Wheat	J Integr Plant Biol	54	330-344	2012		
39941	0	Sonah H., Deshmukh R., Chand S., Srinivasprasad M., Rao G., Upreti H., Singh A., Singh N., Sharma T.	Molecular mapping of quantitative trait loci for flag leaf length and other agronomic traits in rice (Oryza sativa)	Cereal Res. Commun.	40	362-372	2012		
39942	22747909	Thiebaut F., Grativol C., Carnavale-Bottino M., Rojas C.A., Tanurdzic M., Farinelli L., Martienssen R.A., Hemerly A.S., Ferreira P.C.G.	Computational identification and analysis of novel sugarcane microRNAs	BMC Genomics	13	290	2012		
39943	0	Zhao Q., Selomulya C., Xiong H., Chen X.D., Ruan X., Wang S., Xie J., Peng H., Sun W., Zhou Q.	Comparison of functional and structural properties of native and industrial process-modified proteins from long-grain indica rice	J. Cereal Sci.	56	568-575	2012		
39944	0	Wang T., Liu L.Y., Tang Y.Y., Zhang X.B., Zhang M.D., Zheng Y.L., Zhang F.D.	Using the Phosphomannose Isomerase (PMI) Gene from Saccharomyces cerevisiae for Selection in Rice Transformation	Journal of Integrative Agriculture	11	1391-1398	2012		
39945	0	Gowda S.J.M., Randhawa G.J., Bisht I.S., Firke P.K., Singh A.K., Abraham Z., Dhillon B.S.	Morpho-agronomic and simple sequence repeat-based diversity in colored rice (Oryza sativa L.) germplasm from peninsular India	Genet. Resour. Crop Evol.	59	179-189	2012		
39946	0	Canche Moo L.R., Gonzalez A.K., Rodriguez-Zapata L.C., Suarez V., Castano E.	Expression of RNA polymerase IV and V in Oryza sativa	Electronic Journal of Biotechnology	15	1-8	2012		
39947	0	Zhu L.J., Dogan H., Gajula H., Gu M.H., Liu Q.Q., Shi Y.C.	Study of kernel structure of high-amylose and wild-type rice by X-ray microtomography and SEM	J. Cereal Sci.	55	1-5	2012		
39948	0	Najafabadi M.S.	Improving rice (oryza sativa L.) drought tolerance by suppressing a NF-YA transcription factor	Iran. J. Biotechnol.	10	40-48	2012		
39949	0	Chen H., Wei T., Saotome A., Sakaguchi K., Shikamoto Y., Mizuno H., Akita F., Shimizu T., Uehara-Ichiki T., Omura T.	Aggregation ability of virus-specific antibodies is correlated with their capacity to neutralize rice dwarf virus	Jpn. Agric. Res. Q.	46	65-71	2012		
39950	0	Akcan N.	Production of extracellular protease in submerged fermentation by Bacillus licheniformis ATCC 12759	Afr. J. Biotechnol.	11	1729-1735	2012		
39951	0	Li K.T., Charng Y.C.	The use of hygromycin phosphotransferase gene (hpt) with an artificial intron to obtain marker-off transgenic plants	Afr. J. Biotechnol.	11	1330-1336	2012		
39952	0	Frank T., Reichardt B., Shu Q., Engel K.H.	Metabolite profiling of colored rice (Oryza sativa L.) grains	J. Cereal Sci.	55	112-119	2012		
39953	22291005	Srinivasa C., Sharanaiah U., Shivamallu C.	Molecular detection of plant pathogenic bacteria using polymerase chain reaction single-strand conformation polymorphism	Acta Biochim. Biophys. Sin. (Shanghai)	44	217-223	2012		
39954	0	de Rocio Canche Moo L., Arroyo Herrera A., Rodriguez-Zapata L., Suarez V., Castano E.	Epitope selection for multipeptide proteins: The case of RNA polymerase IV and V	Biologia	67	845-851	2012		
39955	0	Guleria S., Sharma V., Marathi B., Anand S., Singh N.K., Mohapatra T., Krishnan S.G., Prabhu K.V., Singh A.K.	Molecular mapping of grain physico-chemical and cooking quality traits using recombinant inbred lines in rice (Oryza sativa L.)	J. Plant Biochem. Biotechnol.	21	1-10	2012		
39956	0	ZHAO Z.W., LUO A.C., LE T., LI S.G.	Identification of Quantitative Trait Locus for Overwintering Germinability in Rice (Oryza sativa L.)	Journal of Integrative Agriculture	11	1767-1774	2012		
39957	22942093	Roy S., Banerjee A., Tarafdar J., Senapati B.K.	Detection of probable marker-free transgene-positive rice plants resistant to rice tungro disease from backcross progenies of transgenic Pusa Basmati 1	J. Genet.	91	213-218	2012		
39958	23065086	Cha D.H., Adams T., Rogg H., Landolt P.J.	Identification and Field Evaluation of Fermentation Volatiles from Wine and Vinegar that Mediate Attraction of Spotted Wing Drosophila, Drosophila suzukii	J. Chem. Ecol.	38	1419-1431	2012		
39959	0	Lian W.W., Tang Y.M., Gao S.Q., Zhang Z., Zhao X., Zhao C.P.	Phylogenetic Analysis and Expression Patterns of the MAPK Gene Family in Wheat (Triticum aestivum L.)	Journal of Integrative Agriculture	11	1227-1235	2012		
39960	0	Xu Q., Chen H., Wang C.H., Yu H.Y., Yuan X.P., Wang Y.P., Feng Y., Tang S.X., Wei X.H.	Genetic Diversity and Structure of New Inbred Rice Cultivars in China	Journal of Integrative Agriculture	11	1567-1573	2012		
39961	0	Panhwar Q.A., Othman R., Rahman Z.A., Meon S., Ismail M.R.	Isolation and characterization of phosphate-solubilizing bacteria from aerobic rice	Afr. J. Biotechnol.	11	2711-2719	2012		
39962	0	Roy S., Banerjee A., Tarafdar J., Senapati B.K., Dasgupta I.	Transfer of transgenes for resistance to rice tungro disease into high-yielding rice cultivars through gene-based marker-assisted selection	Journal of Agricultural Science	150	610-618	2012		
39963	22621926	Gan S.W., Tan E., Lin X., Yu D., Wang J., Tan G.M.Y., Vararattanavech A., Yeo C.Y., Soon C.H., Soong T.W., Pervushin K., Torres J.	The small hydrophobic protein of the human respiratory syncytial virus forms pentameric ion channels	Journal of Biological Chemistry	287	24671-24689	2012		
39964	0	Pinheiro T.M., de Araujo L.G., da Silva-Lobo V.L., Prabhu A.S., de Filippi M.C.	Tagging microsatellite marker to a blast resistance gene in the irrigated rice cultivar Cica-8 [Marcadores microssatelites ligados a gene de resistencia a brusone na cultivar de arroz irrigado cica-8]	Crop Breeding and Applied Biotechnology	12	164-170	2012		
39965	0	Chee K.Y., Tan P.L., Nadarajah K.	Characterisation of the barley oxalate oxidase gene and generation of rice transformant	Biotechnology	11	263-271	2012		
39966	22407977	Canziani G.A., Melero J.A., Lacy E.R.	Characterization of neutralizing affinity-matured human respiratory syncytial virus F binding antibodies in the sub-picomolar affinity range	Journal of Molecular Recognition	25	136-146	2012		
39967	23037808	Trujillo M.A., Oneal M.J., McDonough S., Qin R., Morris J.C.	A steep radioiodine dose response scalable to humans in sodium-iodide symporter (NIS)-mediated radiovirotherapy for prostate cancer	Cancer Gene Ther.	19	839-844	2012		
39968	0	Garcia A.C., Berbara R.L.L., Farias L.P., Izquierdo F.G., Hernandez O.L., Campos R.H., Castro R.N.	Humic acids of vermicompost as an ecological pathway to increase resistance of rice seedlings to water stress	Afr. J. Biotechnol.	11	3125-3134	2012		
39969	0	Mou S., Huang D., Liu Z., He S.	Functional analysis on GCC box and JERE box mediating signal pathway in rice response to stress	Chinese Journal of Applied and Environmental Biology	18	586-590	2012		
39970	0	Sakagami J.I., Sone C., Nakazono M.N.	Injury to rice plants by floods and resistance to submergence	Japanese Journal of Crop Science	81	1-9	2012		
39971	0	Sivakumar K., Karuppiah V., Sethubathi G.V., Thangaradjou T., Kannan L.	Response surface methodology for the optimization of ??-amylase production by Streptomyces sp. ML12 using agricultural byproducts	Biologia	67	32-40	2012		
39972	0	Su P., Liao X.L., Zhang Y., Huang H.	Influencing Factors on Rice Sheath Blight Epidemics in Integrated Rice-Duck System	Journal of Integrative Agriculture	11	1462-1473	2012		
39973	0	El-Naggar N.E.A., Abdelwahed N.A.M.	Optimization of process parameters for the production of alkali-tolerant carboxymethyl cellulase by newly isolated Streptomyces sp. strain NEAE-D	Afr. J. Biotechnol.	11	1185-1196	2012		
39974	22486511	Suzuki K., Kobayashi E., Yamashita H., Uenishi H., Churkina I., Plastow G., Hamasima N., Mitsuhashi T.	Structural analysis of MHC alleles in an RSV tumour regression chicken using a BAC library	Anim. Genet.	43	348-351	2012		
39975	0	Mahajan G., Timsina J., Jhanji S., Sekhon N.K., Kuldeep-Singh	Cultivar Response, Dry-Matter Partitioning, and Nitrogen-Use Efficiency in Dry Direct-Seeded Rice in Northwest India	Journal of Crop Improvement	26	767-790	2012		
39976	0	Tripathi D.K., Singh V.P., Kumar D., Chauhan D.K.	Impact of exogenous silicon addition on chromium uptake, growth, mineral elements, oxidative stress, antioxidant capacity, and leaf and root structures in rice seedlings exposed to hexavalent chromium	Acta Physiologiae Plantarum	34	279-289	2012		
39977	0	Zheng L., Zhang W., Liu S., Chen L., Liu X., Chen X., Ma J., Chen W., Zhao Z., Jiang L., Wan J.	Genetic relationship between grain chalkiness, protein content, and paste viscosity properties in a backcross inbred population of rice	J. Cereal Sci.	56	153-160	2012		
39978	0	Efisue A.A., Derera J.	Genotypic Response in Rice During the Vegetative Phase under Water Stress and Non-stress Conditions	Journal of Crop Improvement	26	816-834	2012		
39979	22385204	Dermine M., Desmecht D.	In vivo modulation of the innate response to pneumovirus by type-I and -III interferon-induced bos taurus Mx1	Journal of Interferon and Cytokine Research	32	332-337	2012		
39980	0	Kokubo T., Miyazaki A., Yoshida T., Yamamoto Y., Inoue Y., Okazaki H., Iwanaga Y., Kuroda S., Ju J., Wang Y.	Effect of slow release fertilizer on nitrogen absorption and fertilizer nitrogen recovery rate in Chinese high-yielding rice cultivars	Japanese Journal of Crop Science	81	424-431	2012		
39981	0	Zhu B., Yi L.X., Hu Y.G., Zeng Z.H., Tang H.M., Yang G.L., Xiao X.P.	Effects of Chinese Milk Vetch (Astragalus sinicus L.) Residue Incorporation on CH4 and N2O Emission from a Double-Rice Paddy Soil	Journal of Integrative Agriculture	11	1537-1544	2012		
39982	22215662	Dochow M., Krumm S.A., Crowe Jr., Moore M.L., Plemper R.K.	Independent structural domains in Paramyxovirus polymerase protein	Journal of Biological Chemistry	287	6878-6891	2012		
39983	0	Pale G., Das A., Pattanayak A.	Screening of rice (Oryza sativa L.) germplasm of North-Eastern India for early vegetative stage heat tolerance	Indian Journal of Genetics and Plant Breeding	72	217-220	2012		
39984	22888294	Yang Y., Chen K.	Molecular evolution of the ent-kaurenoic acid oxidase gene in Oryzeae	Genet. Mol. Biol.	35	448-454	2012		
39985	0	Sun P., Liu F., Tan L., Zhu Z., Fu Y., Sun C., Cai H.	Quantitative trait loci (QTLs) for potassium chlorate resistance and low temperature tolerance in seedling stage in rice (Oryza sativa L.)	Indian Journal of Genetics and Plant Breeding	72	405-414	2012		
39987	0	Lima M.G.S., Lopes N.F., Zimmer P.D., Meneghello G.E., Mendes C.R., do Amarante L.	Enzyme expression in indica and japonica rice cultivars under saline stress [Expressao de enzimas em cultivares de arroz indica e japonica sob estresse salino]	Acta Scientiarum - Biological Sciences	34	473-481	2012		
39988	0	Guertler P., Huber I., Pecoraro S., Busch U.	Development of an event-specific detection method for genetically modified rice Kefeng 6 by quantitative real-time PCR	Journal fur Verbraucherschutz und Lebensmittelsicherheit	7	63-70	2012		
39989	0	Ren D.Y., Li Y.F., Wang Z., Xu F.F., Guo S., Zhao F.M., Sang X.C., Ling Y.H., He G.H.	Identification and Gene Mapping of a multi-floret spikelet 1 (mfs1) Mutant Associated with Spikelet Development in Rice	Journal of Integrative Agriculture	11	1574-1579	2012		
39990	0	PAN S.G., HUANG S.Q., ZHAI J., WANG J.P., CAO C.G., CAI M.L., ZHAN M., TANG X.R.	Effects of N Management on Yield and N Uptake of Rice in Central China	Journal of Integrative Agriculture	11	1993-2000	2012		
39991	0	Sandhu N., Jain S., Chowdhury V.K., Jain R.K.	Microsatellite diversity among aerobic and lowland Indica rice genotypes with differential water requirements	Indian Journal of Genetics and Plant Breeding	72	463-467	2012		
39992	0	Chu S.H., Jiang W., Lee J., Chin J.H., Koh H.J.	QTL analyses of heterosis for grain yield and yield-related traits in indica-japonica crosses of rice (Oryza sativa L.)	Genes and Genomics	34	367-377	2012		
39993	21892730	Lucas S.J., Simkova H., Safar J., Jurman I., Cattonaro F., Vautrin S., Bellec A., Berges H., Dolezel J., Budak H.	Functional features of a single chromosome arm in wheat (1AL) determined from its structure	Functional and Integrative Genomics	12	173-182	2012		
39994	0	Nunkaew T., Kantachote D., Nitoda T., Kanzaki H.	The use of rice straw broth as an appropriate medium to isolate purple nonsulfur bacteria from paddy fields	Electronic Journal of Biotechnology	15	7-7	2012		
39995	0	Reflinur, Chin J.H., Jang S.M., Kim B., Lee J., Koh H.J.	QTLs for hybrid fertility and their association with female and male sterility in rice	Genes and Genomics	34	355-365	2012		
39996	0	Zhu C.F., Fu S.F., Kou G.Y., Chen H.Q., Yu L., Zhou X.	Prokaryotic expression and purification of attachment protein fragment of human respiratory syncytial virus	Chinese Journal of Biologicals	25	389-392	2012		
39997	0	Kombiok J.M., Buah S.S.J., Dzomeku I.K.	Rice Influence on Grain Yield of Maize in Maize/Rice Mixture in the Northern Guinea Savanna Zone of Ghana	Journal of Crop Improvement	26	87-100	2012		
39998	0	Nihei N., Masuda S., Tanoi K., Rai H., Nakanishi T.M.	Initial growth of some crops grown in amino acid as nitrogen source under aseptic condition	Japanese Journal of Crop Science	81	194-200	2012		
39999	0	Furuya N., Taura S., Goto T., Thuy B.T., Ton P.H., Tsuchiya K., Yoshimura A.	Diversity in virulence of Xanthomonas oryzae pv. Oryzae from Northern Vietnam	Jpn. Agric. Res. Q.	46	329-338	2012		
40000	0	Sui J.M., Guo B.T., Wang J.S., Qiao L.X., Zhou Y., Zhang H.G., Gu M.H., Liang G.H.	A New GA-Insensitive Semidwarf Mutant of Rice (Oryza sativa L.) with a Missense Mutation in the SDG Gene	Plant Molecular Biology Reporter	30	187-194	2012		
40001	0	Yamauchi Y., Hirai Y., Saruta K., Yamakawa T., Inoue E., Okayasu T., Mitsuoka M.	Evaluation of a multiple linear regression model for the prediction of panicle number in rice	Journal of the Faculty of Agriculture, Kyushu University	57	421-426	2012		
40002	0	Cheng M.J., Wu M.D., Su Y.S., Chen I.S., Yuan G.F.	Anti-inflammatory compounds from Monascus pilosus-fermented rice	Phytochem Lett	5	63-67	2012		
40003	23573038	Sandhu N., Jain S., Battan K.R., Jain R.K.	Aerobic rice genotypes displayed greater adaptation to water-limited cultivation and tolerance to polyethyleneglycol-6000 induced stress	Physiology and Molecular Biology of Plants	18	33-43	2012		
40004	0	Koga H., Dohi K., Nishiuchi T., Kato T., Takahara H., Mori M., Komatsu S.	Proteomic analysis of susceptible rice plants expressing the whole plant-specific resistance against Magnaporthe oryzae: Involvement of a thaumatin-like protein	Physiol. Mol. Plant Pathol.	77	60-66	2012		
40005	0	Chen M., Wei X., Shao G., Tang S., Luo J., Hu P.	Fragrance of the rice grain achieved via artificial microRNA-induced down-regulation of OsBADH2	Plant Breeding	131	584-590	2012		
40006	0	Masuda Y., Noguchi T., Takahashi T., Iguchi A., Osawa R.	DGGE and PFGE analysis of lactic acid bacterial succession during Kimoto making	Seibutsu-kogaku Kaishi	90	684-690	2012		
40007	22907502	Xiao W.	Specialized technologies for epigenetics in plants	Methods in Molecular Biology	925	231-247	2012		
40008	0	Malek M.R., Yadi R., Ahmadi I.	Effects of conduct to weeds and row spacing on weeds traits and agronomical parameters of rice (Oryza sativa L.) at the north of Iran	Life Science Journal	9	2347-2352	2012		
40009	0	Shi B.H., Zhang J.H., Zheng Y.M., Liu Y.Q., Vera Cruz C.M., Zheng T.Q., Zhao M.F.	Identification of a new resistance gene Pi-Da(t) from Dacca6 against rice blast fungus (Magnaporthe oryzae) in Jin23B background	Molecular Breeding	30	1089-1096	2012		
40010	0	Sousa C.P., Bacarin M.A., Pinto J.J.O.	Growth of residual herbicide (Imazethapyr+Imazapic) bio-indicators sown in rotation with clearfieldR rice [Crescimento de especies bioindicadoras do residual do herbicida (Imazethapyr+Imazapic), semeadas em rotacao com arroz clearfieldR]	Planta Daninha	30	105-111	2012		
40011	0	Mutuku J.M., Nose A.	High activities and mRNA expression of pyrophosphate-fructose-6-phosphate-phosphotransferase and 6-phosphofructokinase are induced as a response to Rhizoctonia solani infection in rice leaf sheaths	Physiol. Mol. Plant Pathol.	77	41-51	2012		
40012	0	Zhang Y.X., Wang Q., Jiang L., Wang B.X., Liu L.L., Shen Y.Y., Cheng X.N., Wan J.M.	Detection and fine mapping of two quantitative trait loci for partial resistance to stripe virus in rice (Oryza sativa L.)	Molecular Breeding	30	1379-1391	2012		
40013	0	Ji S.D., Yuan P.R., Xiao L., Lee H.S., Ahn S.N.	Characterization of quantitative trait loci for number of primary branches in near-isogenic lines from a cross between the Oryza sativa cultivar 'Hwayeongbyeo' and the wild relative Oryza rufipogon	Plant Breeding	131	48-53	2012		
40014	0	Dong M.H., Chen P.F., Xie Y.L., Qiao Z.Y., Yang J.C.	Variations in Carbohydrate and Protein Accumulation among Spikelets at Different Positions Within a Panicle During Rice Grain Filling	Rice Science	19	223-232	2012		
40015	0	Hamaoka N., Araki T., Kumagai E., Hanh T.T., Van Cuong P., Ueno O.	Photosynthetic traits of upper three leaves in the vietnamese F 1 hybrid rice vietlai 45 and its parents during the ripening period	Journal of the Faculty of Agriculture, Kyushu University	57	27-33	2012		
40016	22012076	del Delgado Sandoval S.C., Juarez M.J.A., Simpson J.	Agave tequilana MADS genes show novel expression patterns in meristems, developing bulbils and floral organs	Sex. Plant Reprod.	25	11-26	2012		
40017	0	De Setta N., Metcalfe C.J., Cruz G.M.Q., Ochoa E.A., Van Sluys M.A.	Noise or symphony: Comparative evolutionary analysis of sugarcane transposable elements with other grasses	Top Curr Genet	24	169-192	2012		
40018	0	Shen G.M., Zhu C., Du Q.Z., Shangguan L.N.	Ascorbate-Glutathione Cycle Alteration in Cadmium Sensitive Rice mutant cadB-1	Rice Science	19	185-192	2012		
40019	22539437	Mirzaei M., Pascovici D., Atwell B.J., Haynes P.A.	Differential regulation of aquaporins, small GTPases and V-ATPases proteins in rice leaves subjected to drought stress and recovery	Proteomics	12	864-877	2012		
40020	0	Ye C., Argayoso M.A., Redona E.D., Sierra .S.N., Laza M.A., Dilla C.J., Mo Y., Thomson .M.J., Chin J., Delavina .C.B., Diaz .G.Q., Hernandez .J.E.	Mapping QTL for heat tolerance at flowering stage in rice using SNP markers	Plant Breeding	131	33-41	2012		
40021	0	BAI Y.L., ZHANG X.M., FENG H., JI H.L., HUANG Y., PENG Y.L.	Virulence Types of Magnaporthe oryzae to Hybrid Rice in Sichuan, China	Rice Science	19	320-326	2012		
40022	23093940	Noton S.L., Deflube L.R., Tremaglio C.Z., Fearns R.	The Respiratory Syncytial Virus Polymerase Has Multiple RNA Synthesis Activities at the Promoter	PLoS Pathog.	8	e1002980	2012		
40023	22728068	Vargas J.E., Salton G., Sodre de Castro Laino A., Pires T.D., Bonamino M., Lenz G., Delgado-Canedo A.	pLR: A lentiviral backbone series to stable transduction of bicistronic genes and exchange of promoters	Plasmid	68	179-185	2012		
40024	0	Zhang D., Wu J., Zhang Y., Shi C.	Phenotypic and Candidate Gene Analysis of a New floury endosperm Mutant (osagpl2-3) in Rice	Plant Molecular Biology Reporter	30	1303-1312	2012	AGPL2	OsAGPL2, osagpl2, APL2, OsAPL2, AGPiso, sh2, Sh2, GIF2, GAS1 
40025	0	Hackauf B., Korzun V., Wortmann H., Wilde P., Wehling P.	Development of conserved ortholog set markers linked to the restorer gene Rfp1 in rye	Molecular Breeding	30	1507-1518	2012		
40026	0	Satish K., Madhusudhana R., Padmaja P.G., Seetharama N., Patil J.V.	Development, genetic mapping of candidate gene-based markers and their significant association with the shoot fly resistance quantitative trait loci in sorghum [Sorghum bicolor (L.) Moench]	Molecular Breeding	30	1573-1591	2012		
40027	0	Li S., Liu M., Wang S., Deng Q., Zheng A., Liu H., Wang L., Zhu J., Li P.	Fine mapping of a dominant minute-grain gene, Mi3, in rice	Molecular Breeding	30	1045-1051	2012		
40029	0	Ashkani S., Rafii M.Y., Rusli I., Sariah M., Abdullah S.N.A., Rahim H.A., Latif M.A.	SSRs for Marker-Assisted Selection for Blast Resistance in Rice (Oryza sativa L.)	Plant Molecular Biology Reporter	30	79-86	2012		
40030	24082492	Ghosh N., Das S.P., Mandal C., Gupta S., Das K., Dey N., Adak M.K.	Variations of antioxidative responses in two rice cultivars with polyamine treatment under salinity stress	Physiology and Molecular Biology of Plants	18	301-313	2012		
40031	0	Hussain A.J., Ali J., Siddiq E.A., Gupta V.S., Reddy U.K., Ranjekar P.K.	Mapping of tms8 gene for temperature-sensitive genic male sterility (TGMS) in rice (Oryza sativa L.)	Plant Breeding	131	42-47	2012		
40032	21979254	Zheng Y., Tang Y., Fu Y., He J., Wang X., Hong T.	Purification of human respiratory syncytial virus fusion glycoprotein	Protein Expr. Purif.	81	115-118	2012		
40033	0	Pozniak C.J., Clarke J.M., Clarke F.R.	Potential for detection of marker-trait associations in durum wheat using unbalanced, historical phenotypic datasets	Molecular Breeding	30	1537-1550	2012		
40034	0	Zhou X.J., Ling N., Zhang L., Li Y.H., Ya H.Y.	Expression changes of genes related to chromosome remodeling caused by implantation with low-energy N+ beam in rice	Life Science Journal	9	148-153	2012		
40035	0	Ashikawa I.	Regions outside the leucine-rich repeat domain determine the distinct resistance specificities of the rice blast resistance genes Pik and Pik-m	Molecular Breeding	30	1531-1535	2012		
40036	0	Wang P., Zhou G., Cui K., Li Z., Yu S.	Clustered QTL for source leaf size and yield traits in rice (Oryza sativa L.)	Molecular Breeding	29	99-113	2012		
40037	0	Fu J., Yang J.C.	Research Advances in High-Yielding Cultivation and Physiology of Super Rice	Rice Science	19	177-184	2012		
40038	0	HE X.C., XU H.X., ZHENG X.S., YANG Y.J., GAO G.C., PAN J.H., LU Z.X.	Ecological Fitness of Non-vector Planthopper Sogatella furcifera on Rice Plants Infected with Rice Black Streaked Dwarf Virus	Rice Science	19	335-338	2012		
40039	0	Gawronski P., Schnurbusch T.	High-density mapping of the earliness per se-3A m (Eps-3A m) locus in diploid einkorn wheat and its relation to the syntenic regions in rice and Brachypodium distachyon L.	Molecular Breeding	30	1097-1108	2012		
40040	22927822	Patkar R.N., Xue Y.K., Shui G., Wenk M.R., Naqvi N.I.	Abc3-Mediated Efflux of an Endogenous Digoxin-like Steroidal Glycoside by Magnaporthe oryzae Is Necessary for Host Invasion during blast disease	PLoS Pathog.	8	e1002888	2012		
40041	0	Zhang Z., Li M., Fang Y., Liu F., Lu Y., Meng Q., Peng J., Yi X., Gu M., Yan C.	Diversification of the Waxy Gene is Closely Related to Variations in Rice Eating and Cooking Quality	Plant Molecular Biology Reporter	30	462-469	2012		
40042	0	Cho S.C., Chao Y.Y., Hong C.Y., Kao C.H.	The role of hydrogen peroxide in cadmium-inhibited root growth of rice seedlings	Plant Growth Regul.	66	27-35	2012		
40043	0	Sarkar R.K.	Seed Priming Improves Agronomic Trait Performance under Flooding and Non-flooding Conditions in Rice with QTL Sub1	Rice Science	19	286-294	2012		
40044	0	Luo Y., Sangha J.S., Wang S., Li Z., Yang J., Yin Z.	Marker-assisted breeding of Xa4, Xa21 and Xa27 in the restorer lines of hybrid rice for broad-spectrum and enhanced disease resistance to bacterial blight	Molecular Breeding	30	1601-1610	2012		
40045	22239253	Fu C., Sunkar R., Zhou C., Shen H., Zhang J.Y., Matts J., Wolf J., Mann D.G.J., Stewart C.N., Tang Y., Wang Z.Y.	Overexpression of miR156 in switchgrass (Panicum virgatum L.) results in various morphological alterations and leads to improved biomass production	Plant Biotechnol. J.	10	443-452	2012		
40046	0	Xie F., Guo L., Ren G., Hu P., Wang F., Xu J., Li X., Qiu F., Dela Paz M.A.	Genetic diversity and structure of indica rice varieties from two heterotic pools of southern China and IRRI	Plant Genetic Resources: Characterisation and Utilisation	10	186-193	2012		
40047	0	Akasaka N., Sakoda H., Fujiwara S.	Branched-chain amino acid production by an acetic acid bacterium Gluconacetobacter europaeus	Seibutsu-kogaku Kaishi	90	374-380	2012		
40048	0	Li L., Lin Q., Liu S., Liu X., Wang W., Hang N.T., Liu F., Zhao Z., Jiang L., Wan J.	Identification of quantitative trait loci for seed storability in rice (Oryza sativa L.)	Plant Breeding	131	739-743	2012		
40049	0	Abdel-Hakim A.A., Abdel-Salam Sabbah I., Metwally M.S., El Begawy S., Elshafie E.S.	Mechanical properties and morphology studies of nanocomposites based on RSF/nanoclay modified /HDPE nanocomposites	Life Science Journal	9	134-142	2012		
40050	0	Anvari M.	Optimization of lipase production from rice straw using response surface methodology by Aspergillus niger	Journal of Pure and Applied Microbiology	6	789-796	2012		
40051	0	Jairath M., Khanna P.K., Sharma N.R., Soni G.	Growth and lignocellulolytic enzyme profile of different strains of Lentinus edode with different carbon sources	Journal of Pure and Applied Microbiology	66	1671-1676	2012		
40052	0	Ding L., Li S.C., Wang S.Q., Deng Q.M., Zhang J., Zheng A.P., Wang L.X., Chu M.G., Zhu J., Li P.	Phenotypic characterization and genetic mapping of a new gene required for male and female gametophyte development in rice	Molecular Breeding	29	1-12	2012		
40053	0	FU G.F., SONG J., XIONG J., LIAO X.Y., Zhang X.F., WANG X., LE M.K., TAO L.X.	Thermal Resistance of Common Rice Maintainer and Restorer Lines to High Temperature During Flowering and Early Grain Filling Stages	Rice Science	19	309-314	2012		
40054	0	Dixit S., Mallikarjuna Swamy B.P., Vikram P., Bernier J., Sta Cruz M.T., Amante M., Atri D., Kumar A.	Increased drought tolerance and wider adaptability of qDTY12.1 conferred by its interaction with qDTY2.3 and qDTY3.2	Molecular Breeding	30	1767-1779	2012		
40055	22675274	Blondot M.L., Dubosclard V., Fix J., Lassoued S., Aumont-Nicaise M., Bontems F., Eleouet J.F., Sizun C.	Structure and functional analysis of the RNA- and viral phosphoprotein-binding domain of respiratory syncytial virus M2-1 protein	PLoS Pathog.	8	e1002734	2012		
40056	21933120	Hirano K., Aya K., Matsuoka M., Ueguchi-Tanaka M.	Molecular determinants that convert hormone sensitive lipase into gibberellin receptor	Protein Pept. Lett.	19	180-185	2012		
40057	0	Peyman S.	Diallel analysis to study genetic parameters of rice salinity tolerance traits at germination stage	Sabrao Journal of Breeding and Genetics	44	42-57	2012		
40058	0	Souphonphacdy D., Yabe M., Sato G.	Impact of rubber concession on rural livelihood in champasack province, Lao PDR	Journal of the Faculty of Agriculture, Kyushu University	57	339-344	2012		
40059	0	KIM S.I., KIM D.M., TAI T.H.	Evaluation of Rice Seedling Tolerance to Constant and Intermittent Low Temperature Stress	Rice Science	19	295-308	2012		
40060	0	Redillas M.C.F.R., Park S.H., Lee J.W., Kim Y.S., Jeong J.S., Jung H., Bang S.W., Hahn T.R., Kim J.K.	Accumulation of trehalose increases soluble sugar contents in rice plants conferring tolerance to drought and SalT stress	Plant Biotechnol Rep	6	89-96	2012		
40061	22927818	Fujikawa T., Sakaguchi A., Nishizawa Y., Kouzai Y., Minami E., Yano S., Koga H., Meshi T., Nishimura M.	Surface ????-1,3-Glucan Facilitates Fungal Stealth Infection by Interfering with Innate Immunity in Plants	PLoS Pathog.	8	e1002882	2012		
40062	0	Wickneswari R., Bhuiyan M.A.R., Kalluvettankuzhy S.K., Lim L.S., Thomson M.J., Narimah M.K., Abdullah M.Z.	Identification and Validation of Quantitative Trait Loci for Agronomic Traits in Advanced Backcross Breeding Lines Derived from Oryza rufipogon ???? Oryza sativa Cultivar MR219	Plant Molecular Biology Reporter	30	929-939	2012		
40063	0	Lu S.J., Wei H., Wang Y., Wang H.M., Yang R.F., Zhang X.B., Tu J.M.	Overexpression of a Transcription Factor OsMADS15 Modifies Plant Architecture and Flowering Time in Rice (Oryza sativa L.)	Plant Molecular Biology Reporter	30	1461-1469	2012		
40064	22312005	Ladwig F., Stahl M., Ludewig U., Hirner A.A., Hammes U.Z., Stadler R., Harter K., Koch W.	Siliques Are Red1 from Arabidopsis acts as a bidirectional amino acid transporter that is crucial for the amino acid homeostasis of siliques	Plant Physiol.	158	1643-1655	2012		
40065	0	Kim Y.M., Lee J.Y., Lee T., Lee Y.H., Kim S.H., Kang S.H., Yoon U.H., Ha S.H., Lim S.H.	The suppression of the glutelin storage protein gene in transgenic rice seeds results in a higher yield of recombinant protein	Plant Biotechnol Rep	6	347-353	2012		
40066	0	Wang C.P., Lei K.R., Li Z.G., Lin Q., Wu H.	Effects of chilling stress on chlorophyll fluorescence characteristics of seedling leaves with different leaf ages of Oryza sativa	Journal of Plant Resources and Environment	21	38-43	2012		
40067	0	Tan Y., Xie H., Li N., Li S., Zhu Y.	Molecular characterization of latent fertility restorer loci for Honglian cytoplasmic male sterility in Oryza species	Molecular Breeding	30	1699-1706	2012		
40068	0	Castell-Miller C.V., Samac D.A.	Population genetic structure, gene flow and recombination of Cochliobolus miyabeanus on cultivated wildrice (Zizania palustris)	Plant Pathol.	61	903-914	2012		
40069	0	Afroz A., Qureshi A., Zahur M., Rashid U., Rashid H.	Transgenic Lines of Oryza Sativa (Basmati 2000) Expressing Xa21 Demonstrate Enhanced Resistance to Bacterial Blight	Plant Molecular Biology Reporter	30	204-213	2012		
40070	0	Hakeem K.R., Chandna R., Ahmad A., Iqbal M.	Physiological and Molecular Analysis of Applied Nitrogen in Rice Genotypes	Rice Science	19	213-222	2012		
40071	0	Dhadi S.R., Deshpande A., Ramakrishna W.	A Novel Non-wounding Transient Expression Assay for Cereals Mediated by Agrobacterium tumefaciens	Plant Molecular Biology Reporter	30	36-45	2012		
40072	22453776	Kim J., Lim C.J., Lee B.W., Choi J.P., Oh S.K., Ahmad R., Kwon S.Y., Ahn J., Hur C.G.	A genome-wide comparison of NB-LRR type of resistance gene analogs (RGA) in the plant Kingdom	Mol. Cells	33	385-392	2012		
40073	0	Park S.Y., Lee S.M., Lee J.H., Ko H.S., Kweon S.J., Suh S.C., Shin K.S., Kim J.K.	Compositional comparative analysis between insect-resistant rice (Oryza sativa L.) with a synthetic cry1Ac gene and its non-transgenic counterpart	Plant Biotechnol Rep	6	29-37	2012		
40074	0	Bhattacharjee S.	An inductive pulse of hydrogen peroxide pretreatment restores redox-homeostasis and oxidative membrane damage under extremes of temperature in two rice cultivars	Plant Growth Regul.	68	395-410	2012		
40075	0	Helmy H., El-Mehiry H.F.	Effect of Egyptian bread prepared by different types of flour on diabetic rats and its glycemic index in diabetic patients	Life Science Journal	9	2264-2272	2012		
40076	0	Simonetti E., Alba E., Delibes A.	Chromosomal location of four genes encoding class III peroxidases in wheat [Localizacion cromosomica de cuatro genes de peroxidasa de clase III en trigo]	Phyton (B Aires)	81	139-142	2012		
40077	0	Mou S.L., Liu Z.Q., Lai Y., Cai H.Y., He S.L.	Sequence analysis of Xa21 gene promoter in rice (Oryza sativa 'Nipponbare') and its expression characteristics under different conditions	Journal of Plant Resources and Environment	21	10-15	2012		
40078	21818852	Shu L., Lou Q., Ma C., Ding W., Zhou J., Wu J., Feng F., Lu X., Luo L., Xu G., Mei H.	Genetic, proteomic and metabolic analysis of the regulation of energy storage in rice seedlings in response to drought	Proteomics	11	4122-4138	2011		
40079	0	HU W.D., Zhang H., JIANG J.H., WANG Y.Y., SUN D.Y., WANG X.S., LIANG K., HONG D.L.	Genetic Analysis and QTL Mapping of Large flag leaf angle Trait in Japonica Rice	Rice Science	19	277-285	2012		
40080	0	She K.C., Yaeshima M., Koumoto T., Ohnuma M., Hiromasa T., Hirai M., Matsunaga T., Tashiro R., Sasaki T., Kusano H., Shimada H.	High-temperature stress susceptibility of representative japonica rice cultivars derived from Norin-22: Inadequate ATP supply during seed development may lead to severe damage	Plant Biotechnology	29	465-471	2012		
40081	0	Dong S., Zheng G., Yu X., Fu C.	Biological control of golden apple snail, Pomacea canaliculata by Chinese soft-shelled turtle, Pelodiscus sinensis in the wild rice, Zizania latifolia field	Sci Agric	69	142-146	2012		
40082	0	Yu T., Pang H., Ren T., Li Y., Tang H., Yang G., Xiao X., Tang W., Chen F.	Effects of winter crops on enzyme activity and morphological characteristics of root in subsequent rice crops	Shengtai Xuebao/ Acta Ecologica Sinica	32	7894-7904	2012		
40083	24279910	Li J., Yuan Y., Lu Z., Yang L., Gao R., Lu J., Li J., Xiong G.	Glabrous Rice 1, encoding a homeodomain protein, regulates trichome development in rice	Rice (N Y)	5	32	2012		
40084	0	Fukuda A., Shimizu H., Shiratsuchi H., Yamaguchi H., Ohdaira Y., Mochida H.	Complementary genes that cause black ripening hulls in F 1 plants of crosses between indica and japonica rice cultivars	Plant Prod. Sci.	15	270-273	2012		
40085	24280025	Yang C., Zhang T., Wang H., Zhao N., Liu B.	Heritable alteration in salt-tolerance in rice induced by introgression from wild rice (Zizania latifolia)	Rice (N Y)	5	36	2012		
40086	0	Li X., Ren C.G.	Effects on photosynthetic and fluorescence characteristics under treatments of ABA, BA or DPI in the transgenic rice with over-expression C4 pepc gene	Zhiwu Shengli Xuebao/Plant Physiology Journal	48	549-556	2012		
40087	0	Jiang N., Li Z., Wu J., Wang Y., Wu L., Wang S., Wang D., Wen T., Liang Y., Sun P., Liu J., Dai L., Wang Z., Wang C., Luo M., Liu X., Wang G.L.	Molecular mapping of the Pi2/9 allelic gene Pi2-2 conferring broad-spectrum resistance to Magnaporthe oryzae in the rice cultivar Jefferson	Rice (N Y)	5	29	2012		
40088	0	Li S., Xie K., Li W., Zou T., Ren Y., Wang S., Deng Q., Zheng A., Zhu J., Liu H., Wang L., Ai P., Gao F., Huang B., Cao X., Li P.	Re-sequencing and genetic variation identification of a rice line with ideal plant architecture	Rice (N Y)	5	18	2012		
40089	22844430	Ni K., Li S., Xia Q., Zang N., Deng Y., Xie X., Luo Z., Luo Y., Wang L., Fu Z., Liu E.	Pharyngeal microflora disruption by antibiotics promotes airway hyperresponsiveness after respiratory syncytial virus infection	PLoS ONE	7	e41104	2012		
40090	0	Xiong J., Lin H., Li Z., Fang C., Han Q., Lin W.	Analysis of rhizosphere microbial community structure of weak and strong allelopathic rice varieties under dry paddy field	Shengtai Xuebao/ Acta Ecologica Sinica	32	6100-6109	2012		
40091	24575232	Devi S., Mishra M.K., Elliott M.	Regeneration of transgenic rice with bacterial ipt gene driven by senescence specific (SAG12) promoter by particle bombardment	Tropical Life Sciences Research	23	39-48	2012		
40092	0	Chen W., Cai K., Chen J.	Effects of silicon application and drought stress on photosynthetic traits and mineral nutrient absorption of rice leaves	Shengtai Xuebao/ Acta Ecologica Sinica	32	2620-2628	2012		
40093	0	Rawat N., Neeraja C.N., Nair S., Bentur J.S.	Differential gene expression in gall midge susceptible rice genotypes revealed by suppressive subtraction hybridization (SSH) cDNA libraries and microarray analysis	Rice (N Y)	5	8	2012		
40094	0	Debnath S., Satya P., Saha B.C.	Differential response of different stress related biochemicals and reactive oxygen species scavenging enzymes in rice-Xanthomonas interaction	Research on Crops	13	388-391	2012		
40095	0	Zhang J., Jiang C., Hao Q., Wu Y., Xie D.	Effect of tillage systems on light fraction carbon in a purple paddy soil	Shengtai Xuebao/ Acta Ecologica Sinica	32	4379-4387	2012		
40096	0	Huang M., Liu D.Y., Sun X., Chen K.J.	Determining the optimal drying conditions for GBR with specific reference to quality, drying rate, and energy consumption	Transactions of the ASABE	55	1829-1836	2012		
40097	24279714	Nigorikawa M., Watanabe A., Furukawa K., Sonoki T., Ito Y.	Enhanced saccharification of rice straw by overexpression of rice exo-glucanase	Rice (N Y)	5	14	2012		
40098	24280046	Tripathi A.K., Pareek A., Sopory S.K., Singla-Pareek S.L.	Narrowing down the targets for yield improvement in rice under normal and abiotic stress conditions via expression profiling of yield-related genes	Rice (N Y)	5	37	2012		
40099	0	Wang W., Liu X., Tian Y., Yao X., Cao W., Zhu Y.	Effects of different soil water treatments on photosynthetic characteristics and grain yield in rice	Shengtai Xuebao/ Acta Ecologica Sinica	32	7053-7060	2012		
40101	0	Liu A., Xu S., Cai X., Lu C., Peng P.	Effects of microchemical substances in anaerobic fermented liquid from rice straw and cyanobacteria on Fusaruim oxysporum f. sp. niveum growth	Shengtai Xuebao/ Acta Ecologica Sinica	32	4585-4592	2012		
40102	0	Miyake C., Suzuki Y., Yamamoto H., Amako K., Makino A.	O2-enhanced induction of photosynthesis in rice leaves: the Mehler-ascorbate peroxidase (MAP) pathway drives cyclic electron flow within PSII and cyclic electron flow around PSI	Soil Sci. Plant Nutr.	58	718-727	2012		
40103	23285210	Chowdhary A., Kathuria S., Xu J., Sharma C., Sundar G., Singh P.K., Gaur S.N., Hagen F., Klaassen C.H., Meis J.F.	Clonal Expansion and Emergence of Environmental Multiple-Triazole-Resistant Aspergillus fumigatus Strains Carrying the TR34/L98H Mutations in the cyp51A Gene in India	PLoS ONE	7	e52871	2012		
40104	0	Angeles-Shim R.B., Asano K., Takashi T., Shim J., Kuroha T., Ayano M., Ashikari M.	A WUSCHEL-related homeobox 3B gene, depilous (dep), confers glabrousness of rice leaves and glumes	Rice (N Y)	5	28	2012		
40105	0	Du S.Y., Wang D.Z., Wu S., Wang H., Wang S.H.	Changes of antioxidant enzyme activities in anthers and leaves from three types of rice male sterile lines	Zhiwu Shengli Xuebao/Plant Physiology Journal	48	1179-1186	2012		
40106	0	Niu X.D., Li G.R., Kang Z.H., Huang J.L., Wang G.X.	Photosynthetic characteristics and antioxidant enzyme system in high-chlorophyll rice Gc mutant	Russian Journal of Plant Physiology	59	691-695	2012		
40107	0	Lou Y., Zhou W.	Effect of elevated ultraviolet-B (UV-B) radiation on CH4 emission in herbicide resistant transgenic rice from a paddy soil	Shengtai Xuebao/ Acta Ecologica Sinica	32	4731-4736	2012		
40108	0	Cai M., Wang N., Wang Z., Wang F., Zhu M., Huang W.	The role of root border cells in protecting buckwheat root apices from aluminum toxicity and their effect on polysaccharide contents of root tip cell walls	Shengtai Xuebao/ Acta Ecologica Sinica	32	915-922	2012		
40109	0	Watanabe S., Nakamura K., Ryu C.S., Iida M., Kawashima S.	Effects of different application timings of methane fermentation digested liquid to paddy plots on soil nitrogen and rice yield	Soil Sci. Plant Nutr.	58	224-237	2012		
40110	0	Kole P.C., Chakraborty N.R.	Assessment of genetic divergence in induced mutants of short grain aromatic non-basmati rice (Oryza sativa L.)	Tropical Agriculture	89	211-215	2012		
40111	23300622	Liu T., Zhou Y., Chen L., Chen W., Liu L., Shen X., Zhang W., Zhang J., Yang Q.	Structural Insights into Cellulolytic and Chitinolytic Enzymes Revealing Crucial Residues of Insect ??-N-acetyl-D-hexosaminidase	PLoS ONE	7	e52225	2012		
40112	0	Nozoe T., Uchino A., Okawa S., Yoshida S., Kanda Y., Nakayama Y.	Suppressive effect of rice bran incorporation in paddy soil on germination of Monochoria vaginalis and its relationship with electric conductivity	Soil Sci. Plant Nutr.	58	200-205	2012		
40113	0	Pu X.M., Zhou J.N., Lin B.R., Shen H.F.	First report of bacterial foot rot of rice caused by a Dickeya zeae in China	Plant Dis.	96	1818	2012		
40114	0	Bhattacharyya R., Tuti M.D., Bisht J.K., Bhatt J.C., Gupta H.S.	Conservation tillage and fertilization impact on soil aggregation and carbon pools in the Indian himalayas under an irrigated rice-wheat rotation	Soil Sci	177	218-228	2012		
40115	22389685	Yu X., Lu R., Wang Z., Zhu N., Wang W., Julian D., Chris B., Lv J., Tan W.	Etiology and clinical characterization of respiratory virus infections in adult patients attending an emergency department in beijing	PLoS ONE	7	e32174	2012		
40116	0	Kole P.C., Chakraborty N.R., Mallick R.B.	Evaluation of gamma ray induced mutants of aromatic rice (Oryza sativa L.)	Tropical Agriculture	89	205-210	2012		
40117	0	Li J.Q., Shahid M.Q., Feng J.H., Liu X.D., Zhao X.J., Lu Y.G.	Identification of neutral alleles at pollen sterility gene loci of cultivated rice (Oryza sativa L.) from wild rice (O. rufipogon Griff.)	Plant Systematics and Evolution	298	33-42	2012		
40118	0	An H., Liu M., Wang Y., Yan Y.	Effects of different rice-crab production modes on soil labile organic carbon and enzyme activities	Shengtai Xuebao/ Acta Ecologica Sinica	32	4753-4761	2012		
40119	0	Kumar A., Kumar N.	Crop residue management for sustainable crop production and soil health in rice-wheat cropping system	Research on Crops	13	412-417	2012		
40120	0	Luo Y., Chen S.N., Wu W.T., Lo G.L., Jiang C.M., Cheng Z.Q.	Gene chip of Oryza granulata responsing to Xanthomonas oryzae pv. oryzae (Xoo)	Zhiwu Shengli Xuebao/Plant Physiology Journal	48	821-827	2012		
40121	0	Kundu R., Brahmachari K.	Nutrient management in rice-lathyrus (Paira)-greengram cropping system under coastal saline zone of West Bengal	Research on Crops	13	418-425	2012		
40122	0	Raman A., Verulkar S.B., Mandal N.P., Variar M., Shukla V.D., Dwivedi J.L., Singh B.N., Singh O.N., Swain P., Mall A.K., Robin S., Chandrababu R., Jain A., Ram T., Hittalmani S., Haefele S., Piepho H.P., Kumar A.	Drought yield index to select high yielding rice lines under different drought stress severities	Rice (N Y)	5	31	2012		
40123	0	Zheng J., Zhang Y., Chen L., Wang Z.	Nitrous oxide emissions affected by tillage measures in winter wheat under a rice-wheat rotation system	Shengtai Xuebao/ Acta Ecologica Sinica	32	6138-6146	2012		
40124	0	Fukuoka M., Yoshimoto M., Hasegawa T.	Varietal range in transpiration conductance of flowering rice panicle and its impact on panicle temperature	Plant Prod. Sci.	15	258-264	2012		
40125	22952830	Song J., Shi L., Li D., Sun Y., Niu Y., Chen Z., Luo H., Pang X., Sun Z., Liu C., Lv A., Deng Y., Larson-Rabin Z., Wilkinson M., Chen S.	Extensive Pyrosequencing Reveals Frequent Intra-Genomic Variations of Internal Transcribed Spacer Regions of Nuclear Ribosomal DNA	PLoS ONE	7	e43971	2012		
40126	0	Huang M., Xia B., Zou Y., Jiang P., Shi W., Hongthong P., Xie X.	Improvement in super hybrid rice: A comparative study between super hybrid and inbred varieties	Research on Crops	13	1-10	2012		
40127	0	Duan C.X., Yu J.J., Li W.C., Bai J.Y., Chen M.G., Zhu Z.D., Wang X.M.	Effect of small brown planthopper stress on defense enzyme activities and cell ultrastructure in rice leaf	Zhiwu Shengli Xuebao/Plant Physiology Journal	48	971-978	2012		
40128	0	Wang H., Zhu Y., Ma M., Li W., Gu K., Cao W., Tian Y.	Coupling remotely sensed information with a rice growth model by combining updating and assimilation strategies	Shengtai Xuebao/ Acta Ecologica Sinica	32	4505-4515	2012		
40129	0	Rahman M.A., Rahman M.M., Maki T., Hasegawa H.	The significance of biodegradable methylglycinediacetic acid (MGDA) for iron and arsenic bioavailability and uptake in rice plant	Soil Sci. Plant Nutr.	58	627-636	2012		
40130	0	Wang C., Cui L., Mao X., Wen Y.	Comparative studies on the farmers'willingness to accept eco-compensation in wetlands nature reserve	Shengtai Xuebao/ Acta Ecologica Sinica	32	5345-5354	2012		
40131	0	Sriprachote A., Kanyawongha P., Pantuwan G., Ochiai K., Matoh T.	Evaluation of Thai rice cultivars with low-grain cadmium	Soil Sci. Plant Nutr.	58	568-572	2012		
40132	0	Zhao Q., Dai S.	Salt-responsive mechanisms in the plant root revealed by proteomic analyses	Shengtai Xuebao/ Acta Ecologica Sinica	32	274-283	2012		
40133	22984581	Xu L., He X., Zhang D.-m., Feng F.-s., Wang Z., Guan L.-l., Wu J.-h., Zhou R., Zheng B.-j., Yuen K.-y., Li M.-f., Cao K.-y.	Surveillance and Genome Analysis of Human Bocavirus in Patients with Respiratory Infection in Guangzhou, China	PLoS ONE	7	e44876	2012		
40134	23029150	Lee Y.L., Peng Q., Fong S.W., Chen A.C.H., Lee K.F., Ng E.H.Y., Nagy A., Yeung W.S.B.	sirtuin 1 Facilitates Generation of Induced Pluripotent Stem Cells from Mouse Embryonic Fibroblasts through the miR-34a and p53 Pathways	PLoS ONE	7	e45633	2012		
40135	0	Zhang Y., Wang Y.P., Liu P., Song J.M., Xu G.D., Zheng G.H.	Effect of toxic Fe 2+ levels on the biological characteristics of rice root border cells	Russian Journal of Plant Physiology	59	766-771	2012		
40136	0	Ureshi A., Matuda S., Ohashi E., Onishi K., Takamure I., Kato K.	The rice RCN1/OsABCG5 mutation is associated with root development in response to nutrient shortage	Plant Root	6	28-35	2012		
40137	23167196	Zhang Y., Wu J., He C.	Uptake of exogenous sugars and responses by rice root of young wild-type and OsPK1 mutant seedlings	Shengwu Gongcheng Xuebao/Chinese Journal of Biotechnology	28	847-854	2012		
40138	0	Thirumala M., Vishnuvardhan Reddy S.	Production of poly-(3-hydroxybutyrate) by Bacillus sp. 112A, utilizing some waste starchy materials	Journal of Pure and Applied Microbiology	6	497-499	2012		
40139	0	Das A., Angayarkanni J., Bhattacharya S., Palaniswamy M.	Quantification of aflatoxin B1 produced by Aspergillus flavus MTCC 2798 in rice straw under solid-state fermentation	Journal of Pure and Applied Microbiology	66	1663-1669	2012		
40140	0	Tyagi W., Rai M., Dohling A.	Haplotype analysis for Pup1 locus in rice genotypes of north eastern and eastern india to identify suitable donors tolerant to low phosphorus	Sabrao Journal of Breeding and Genetics	44	398-405	2012		
40141	0	Velho G.F., Crusciol C.A.C., Velini E.D., Castro G.S.A., Borghi E.	Weed competition between brachiaria plantaginea and rice culture, CV. 'Primavera' [Interferencia de brachiaria plantaginea com a cultura do arroz, CV. Primavera]	Planta Daninha	30	17-26	2012		
40142	0	LANG Y.Z., YANG X.D., WANG M.E., ZHU Q.S.	Effects of Lodging at Different Filling Stages on Rice Yield and Grain Quality	Rice Science	19	315-319	2012		
40143	0	SHANG H.X., YE S.H., DENG X.M., Zhou Y., XIU F.L., JI X.J., LIU J.Y., CHEN P.P., JIN Q.S., Zhang X.M.	Identification and Fine Mapping of heading date Related Mutant Gene in Rice	Rice Science	19	269-276	2012		
40144	0	Yazawa K., Jiang C.J., Kojima M., Sakakibara H., Takatsuji H.	Reduction of abscisic acid levels or inhibition of abscisic acid signaling in rice during the early phase of Magnaporthe oryzae infection decreases its susceptibility to the fungus	Physiol. Mol. Plant Pathol.	78	1-7	2012		
40145	0	Rasyad A., Manurung G.M.E., van Sanford D.A.	Genotype x environment interaction and stability of yield components among rice genotypes in Riau province, Indonesia	Sabrao Journal of Breeding and Genetics	44	102-111	2012		
40146	0	Wang F., Wang R., Jing W., Zhang W.	Quantitative dissection of lipid degradation in rice seeds during accelerated aging	Plant Growth Regul.	66	49-58	2012		
40147	0	Chao Y.Y., Chou T.S., Kao C.H.	Involvement of abscisic acid and hydrogen peroxide in regulating the activities of antioxidant enzymes in leaves of rice seedlings under magnesium deficiency	Plant Growth Regul.	66	1-8	2012		
40148	0	Tsaftaris A.S., Pasentsis K., Madesis P., Argiriou A.	Sequence Characterization and Expression Analysis of Three APETALA2-like Genes from Saffron Crocus	Plant Molecular Biology Reporter	30	443-452	2012		
40149	0	Tran D.S., Tran T.T.H., Nguyen T.L.H., Ha M.L., Dinh B.Y., Kumamaru T., Satoh H.	Variation on grain quality in Vietnamese rice cultivars collected from central Vietnam	Journal of the Faculty of Agriculture, Kyushu University	57	365-371	2012		
40150	0	Belefant-Miller H.	Specific panicle responses resulting from MSMA-induced straighthead sterility in rice	Plant Growth Regul.	66	255-264	2012		
40151	0	Suzuki S., Ma J.F., Yamamoto N., Hattori T., Sakamoto M., Umezawa T.	Silicon deficiency promotes lignin accumulation in rice	Plant Biotechnology	29	391-394	2012		
40152	0	Tokmakov S.V., Mukhina Z.M., Bogomaz D.I., Matveeva T.V.	Development of a molecular marker for assessment of intraspecific polymorphism by the Rc gene that determines the red color of pericarp in rice Oryza sativa L.	Russian Journal of Genetics: Applied Research	2	357-366	2012		
40153	0	Bhadru D., Tirumala Rao V., Chandra Mohan Y., Bharathi D.	Genetic variability and diversity studies in yield and its component traits in Rice (Oryza sativa L.)	Sabrao Journal of Breeding and Genetics	44	129-137	2012		
40154	0	Alegbejo J.O., Ameh D.A.	Glycaemic index and blood glucose responses of type 2 diabetes mellitus and healthy subjects to rice and beans meal	Journal of Pure and Applied Microbiology	6	773-780	2012		
40155	0	Guo T.R., Yao P.C., Zhang Z.D., Wang J.J., Wang M.	Involvement of Antioxidative Defense System in Rice Seedlings Exposed to Aluminum Toxicity and Phosphorus Deficiency	Rice Science	19	207-212	2012		
40156	0	Petter F.A., Pacheco L.P., Zuffo A.M., Alcantara Neto F., Ribeiro W.R.M.	ALS-inhibiting herbicides applied in upland-rice post-emergence [Herbicidas Inibidores da ALS Aplicados em Pos-Emergencia no Arroz de Terras Altas]	Planta Daninha	30	617-625	2012		
40157	0	Zheng W.J., Liu Z.H., Zhao J.M., Chen W.F.	Genetic Analysis of Stripe disease resistance in Rice Restorer Line C224 Using Major Gene plus Polygene Mixed Effect Model	Rice Science	19	202-206	2012		
40158	0	Winarto B., Teixeira da Silva J.A.	Influence of isolation technique of half-anthers and of initiation culture medium on callus induction and regeneration in Anthurium andreanum	Plant Cell Tissue Organ Cult.	110	401-411	2012		
40159	0	Dinh T.S., Zhou C., Cao X., Han C., Yu J., Li D., Zhang Y.	The complete genome sequence of southern rice black-streaked dwarf virus isolated from Vietnam	Plant Pathology Journal	28	428-432	2012		
40160	0	de Souza C.R., Ghosh A.K., da Silva I.R., de Alvarenga E.S., Novais R.F., de Jesus G.L.	Phosphorus transformation in poultry litter and litter-treated Oxisol of Brazil assessed by 31P-NMR and wet chemical fractionation [Transforma??o de f?sforo em camas de avi?rio e em Latossolo tratado com cama de avi?rio avaliadas por meio de 31P-RMN e fracionamento qu?mico]	Rev. Bras. Cienc. Solo	36	1516-1527	2012		
40161	0	Shibayama M., Sakamoto T., Takada E., Inoue A., Morita K., Yamaguchi T., Takahashi W., Kimura A.	Estimating rice leaf greenness (SPAD) using fixed-point continuous observations of visible red and near infrared narrow-band digital images	Plant Prod. Sci.	15	293-309	2012		
40162	0	Rao G.J.N., Swain D., Mishra R., Prasad D., Krishna R.S., Rao R.N., Sahu R.K.	Marker Based Estimation of Gene Flow in Tropical Rice Fields and Its Ecological Consequences	Trop Plant Biol	5	277-285	2012		
40163	0	Bharadwaj C., Tara Satyavathi C., Rao S.K., Mishra R., Suman J., Mishra D.K.	Heterosis for yield arid yield components in selected new plant type crosses of rice (Oryzasativa L.)	Tropical Agriculture	89	55-64	2012		
40164	0	Yamazaki M., Asakawa S., Murase J., Kimura M.	Phylogenetic diversity of microturbellarians in Japanese rice paddy fields, with special attention to the genus Stenostomum	Soil Sci. Plant Nutr.	58	11-23	2012		
40165	22272223	Xu W., Zhai Z., Huang K., Zhang N., Yuan Y., Shang Y., Luo Y.	A novel universal primer-multiplex-PCR method with sequencing gel electrophoresis analysis	PLoS ONE	7	e22900	2012		
40166	0	Kumar G.S., Raju M.S., Kumar R.M.	Influence of nitrogen levels on yield, grain quality and nitrogen uptake of rice cultivars	Research on Crops	13	16-20	2012		
40167	0	Nagaoka I., Sasahara H., Shigemune A., Goto A., Miura K.	The effect of high-temperature stress applied to the root on grain quality of rice	Plant Prod. Sci.	15	274-277	2012		
40168	0	Cao H.X., Hanan J.S., Liu Y., Liu Y.X., Yue Y.B., Zhu D.W., Lu J.F., Sun J.Y., Shi C.L., Ge D.K., Wei X.F., Yao A.Q., Tian P.P., Bao T.L.	Comparison of Crop Model Validation Methods	Journal of Integrative Agriculture	11	1274-1285	2012		
40169	0	Lu Y., Song Z., Lu K., Lian X., Cai H.	Molecular characterization, expression and functional analysis of the amino acid transporter gene family (OsAATs) in rice	Acta Physiologiae Plantarum	34	1943-1962	2012		
40170	23136511	Fukuta Y., Konisho K., Senoo-Namai S., Yanagihara S., Tsunematsu H., Fukuo A., Kumashiro T.	Genetic characterization of rainfed upland New Rice for Africa (NERICA) varieties	Breed. Sci.	62	27-37	2012		
40171	0	Hijam L., Dewanjee S.D., Sarkar K.K.	Influence of root characters on drought resistance in rice (Oryza sativa L.)	Indian Journal of Genetics and Plant Breeding	72	221-225	2012		
40172	0	Kumar S., Gupta D., Nayyar H.	Comparative response of maize and rice genotypes to heat stress: Status of oxidative stress and antioxidants	Acta Physiologiae Plantarum	34	75-86	2012		
40173	0	Deshmukh R.K., Sonah H., Kondawar V., Tomar R.S.S., Deshmukh N.K.	Identification of meta quantitative trait loci for agronomical traits in rice (Oryza sativa)	Indian Journal of Genetics and Plant Breeding	72	264-270	2012		
40174	0	DUAN Y.L., GUAN H.Z., ZHUO M., CHEN Z.W., LI W.T., PAN R.S., MAO D.M., ZHOU Y.C., WU W.R.	Genetic Analysis and Mapping of an Enclosed Panicle Mutant Locus ESP1 in Rice (Oryza sativa L.)	Journal of Integrative Agriculture	11	1933-1939	2012		
40175	0	Cai H., Xie W., Zhu T., Lian X.	Transcriptome response to phosphorus starvation in rice	Acta Physiologiae Plantarum	34	327-341	2012		
40176	0	Zhao Y., Chen C., Rong J., Dong S., Liao H., Lu F., Lu B., Chen J., Song Z.	Population clonal diversity and fine-scale genetic structure in Oryza officinalis (Poaceae) from China, implications for in situ conservation	Genet. Resour. Crop Evol.	59	113-124	2012		
40177	0	Asadi A., Ghadamyari M., Sajedi R.H., Sendi J.J., Tabari M.	Biochemical characterization of ??- and ??-glucosidases in alimentary canal, salivary glands and haemolymph of the rice green caterpillar, Naranga aenescens M. (Lepidoptera: Noctuidae)	Biologia (Poland)	67	1186-1194	2012		
40178	0	Ali M., Alghamdi S., Begum M., Anwar Uddin A., Alam M., Huang D.	Screening of rice genotypes for resistance to the brown planthopper, Nilaparvata lugens Stal	Cereal Res. Commun.	40	502-508	2012		
40179	0	Jeng T.L., Lai C.C., Ho P.T., Shih Y.J., Sung J.M.	Agronomic, molecular and antioxidative characterization of red- and purple-pericarp rice (Oryza sativa L.) mutants in Taiwan	J. Cereal Sci.	56	425-431	2012		
40180	0	Wakayama M., Aoki N.	Metabolome analysis using CE-MS for crop science	Japanese Journal of Crop Science	81	357-362	2012		
40181	0	Chung H.J., Cho D.W., Park J.D., Kweon D.K., Lim S.T.	In vitro starch digestibility and pasting properties of germinated brown rice after hydrothermal treatments	J. Cereal Sci.	56	451-456	2012		
40182	0	Mishra S.K., Tiwari A.K.	Phenological, quantitative and analytical studies of Pleurotus flabellatus	Afr. J. Biotechnol.	11	346-354	2012		
40183	0	Carvalho A.V., Mattietto R.A., Bassinello P.Z., Koakuzu S.N., Rios A.O., Maciel R.A., Carvalho R.N.	Processing and characterization of extruded breakfast meal formulated with broken rice and bean flour [Processamento e caracterizacao de refeicao matinal extrusada formulada com farinha de graos quebrados de arroz e feijao]	Ciencia e Tecnologia de Alimentos	32	515-524	2012		
40184	0	Dong Y., Pei X., Yuan Q., Wang F., Wu H., Jia S., Peng Y.	Genetic differentiation of Oryza ruffipogon Griff. from Hainan Island and Guangdong, China Based on Hd1 and Ehd1 genes	Biochem. Syst. Ecol.	45	224-236	2012		
40185	23046655	Conte S.S., Walker E.L.	Genetic and Biochemical Approaches for Studying the Yellow Stripe-Like Transporter Family in Plants	Curr Top Membr	69	295-322	2012		
40186	0	Kanda E., Kimura T., Oikawa A., Ookawa S., Sasaki J., Asano M., Sato Y., Kon K., Fujii H., Fujimura S., Suzuki Y., Hamasaki T., Nemoto M., Shimono H.	Factors responsible for regional variation of cold tolerance in rice in Northern Japan	Japanese Journal of Crop Science	81	190-193	2012		
40187	0	Zhang D.P., Wu J.G., Li G., Shi C.H.	The screening and preliminary construction of quality mutant population for cultivar "Nipponbare" in japonica rice (Oryza sativa)	Biologia (Poland)	67	1099-1106	2012		
40188	0	Yoshinaga S., Nagata K., Shiratsuchi H., Fukuda A.	Characteristics of grain quality and the causal factors in direct-seeded rice (Oryza stiva L.) in lowland field in a cooler region of Japan	Japanese Journal of Crop Science	81	432-440	2012		
40189	0	Shi Z., Li D., Jing Q., Cai J., Jiang D., Cao W., Dai T.	Effects of nitrogen applications on soil nitrogen balance and nitrogen utilization of winter wheat in a rice-wheat rotation	Field Crops Res.	127	241-247	2012		
40190	0	Sarao P.S., Mahal M.S.	Evaluation of rice germplasm for resistance to a leaffolder, stemborer and planthopper under field and glasshouse conditions in India	Int J Trop Insect Sci	32	126-135	2012		
40191	0	Takai T., Arai-Sanoh Y., Iwasawa N., Hayashi T., Yoshinaga S., Kondo M.	Comparative mapping suggests repeated selection of the same quantitative trait locus for high leaf photosynthesis rate in rice high-yield breeding programs	Crop Sci.	52	2649-2658	2012		
40192	0	Feng Q., Yang C., Lin X., Wang J., Ou X., Zhang C., Chen Y., Liu B.	Salt and alkaline stress induced transgenerational alteration in DNA methylation of rice (Oryza sativa)	Aust J Crop Sci	6	877-883	2012		
40193	0	Cui H., Ren W.	Performance test of rice seed tape twisting mechanism	International Agricultural Engineering Journal	21	59-64	2012		
40194	0	Singh S.P., Singh P., Singh S.	Design and development of hand operated maize dehusker-sheller for farm women	AMA, Agricultural Mechanization in Asia, Africa and Latin America	43	15-21	2012		
40195	0	Hosoda K., Matsuo M., Miyaji M., Matsuyama H., Maeda H., Ohta H., Kato H., Nonaka K.	Fermentative quality of purple rice (Oryza sativa L.) silage and its effects on digestibility, ruminal fermentation and oxidative status markers sheep: A preliminary study	Grassland Science	58	161-169	2012		
40196	0	Singh B., Katiyar D., Singh D.V., Jayaswal A.	Nitrogen fertilizer-induced spatial variation in the size of methane oxidizing bacterial population in rainfed rice cultivars	Asian Journal of Agricultural Research	6	158-170	2012		
40197	0	Arif C., Setiawan B.I., Mizoguchi M., Doi R.	Estimation of water balance components in paddy fields under non-flooded irrigation regimes by using excel solver	Journal of Agronomy	11	53-59	2012		
40198	0	Lu J., Jiang L., Chen D., Toyota K., Strong P.J., Wang H., Hirasawa T.	Decontamination of anaerobically digested slurry in a paddy field ecosystem in Jiaxing region of China	Agriculture, Ecosystems and Environment	146	13-22	2012		
40199	0	Ali M., Alghamdi S., Begum M., Anwar Uddin A., Alam M., Huang D.	Screening of rice genotypes for resistance to the brown planthopper, Nilaparvata lugens St?l	Cereal Res. Commun.	40	502-508	2012		
40200	0	Inthavong T., Tsubo M., Fukai S.	Soil clay content, rainfall, and toposequence positions determining spatial variation in field water availability as estimated by a water balance model for rainfed lowland rice	Crop and Pasture Science	63	529-538	2012		
40201	0	Pei H., Nakamura K.	Biodiversity and abundance of spider assemblages in restored terraced paddies	Acta Arachnologica	61	31-39	2012		
40202	0	Elanchezhian R., Abdul Haris A., Biswas S., Chhabra V.	Simulation of yield and its component traits of rice (oryza sativa l.) Varieties grown in indo-gangetic plains of bihar under projected climate change	Indian Journal of Plant Physiology	17	195-202	2012		
40203	0	Wang Q.Z., Fu H.W., Huang J.Z., Zhao H.J., Li Y.F., Zhang B., Shu Q.Y.	Generation and characterization of bentazon susceptible mutants of commercial male sterile lines and evaluation of their utility in hybrid rice production	Field Crops Res.	137	12-18	2012		
40204	0	Saito K., Sokei Y., Wopereis M.C.S.	Enhancing rice productivity in West Africa through genetic improvement	Crop Sci.	52	484-493	2012		
40205	0	Bahaar S.W.N., Bhat G.A.	Community structure and distribution of epigeal-cum-herb layer fauna in the rice fields of Kashmir (J and K) India	Asian Journal of Agricultural Research	6	30-38	2012		
40206	0	Mahanta K., Jha D.K., Rajkhowa D.J., Manoj-Kumar	Microbial enrichment of vermicompost prepared from different plant biomasses and their effect on rice (Oryza sativa L.) growth and soil fertility	Biological Agriculture and Horticulture	28	241-250	2012		
40207	0	Kumar N., Nandwal A.S., Yadav R., Bhasker P., Kumar S., Devi S., Singh S., Lather V.S.	Assessment of chickpea genotypes for high temperature tolerance	Indian Journal of Plant Physiology	17	225-232	2012		
40208	0	Yadav V.K., Kumar R.	Characters association and path analysis of yield and its components in aromatic rice (Oryza Sativa L.) genotypes	Plant Archives	12	607-611	2012		
40209	0	Shukla R., Dwivedi D.K.	Development of zerophytic rice genotypes by analyzing the correlation and path analysis for its yield components	Plant Archives	12	775-783	2012		
40210	0	Sunitha Devi R., Venkat Reddy A., Malathi S., Vishnu Vardhan Reddy D.	Bio-efficacy of certain new insecticides against yellow stem borer, scirpophaga incertulas (walker) in rice	Pestology	36	44-46	2012		
40211	0	Zhang R.S., Liu Y.F., Luo C.P., Wang X.Y., Liu Y.Z., Qiao J.Q., Yu J.J., Chen Z.Y.	Bacillus amyloliquefaciens Lx-11, a potential biocontrol agent against rice bacterial leaf streak	Journal of Plant Pathology	94	609-619	2012		
40212	0	Rawat L., Singh Y., Shukla N., Kumar J.	Seed biopriming with salinity tolerant isolates of Trichoderma harzianum alleviates salt stress in rice: Growth, physiological and biochemical characteristics	Journal of Plant Pathology	94	353-365	2012		
40213	0	Sidde Gowda D.K., Prasanna Kumar M.K., Yogananda S.B., Dharshini G.M., Pandurangegowda K.T.	Pre mixture insecticides - A novel approach to manage rice insect pests with different mode of feeding	Pestology	36	31-34	2012		
40214	0	Yadav V.K., Kumar R.	Assessment of selection parameters for achieving higher yield in aromatic rice genotypes	Plant Archives	12	1121-1123	2012		
40215	0	Satheeshkumar P., Saravanan K.	Genetic divergence analysis for grain yield and quality traits in rice (Oryza Sativa L.)	Plant Archives	12	639-644	2012		
40216	0	Bhanu K.V., Reddy P.S.	Evaluation of field efficacy of imidacloprid 40% + ethiprole 40% - 80 wg against planthoppers in rice	Pestology	36	29-34	2012		
40217	24163954	Mahima, Garg A.K., Mudgal V.	Influence of sodium selenite on growth, nutrient utilization and selenimn uptake in Cavia porcellus	Pakistan Journal of Biological Sciences	15	448-453	2012		
40218	0	Rengel M., Cruz J., Croce J., Montano J., Chirinos I.	Effect of foliar fertilization with zinc and boron on yield components of rice crop (Oryza sativa L.) grown in flooded soils [Efecto de la fertilizacion foliar con zinc y boro sobre los componentes del rendimiento en el cultivo de arroz (Oryza sativa L.) en suelos inundados]	Revista Cientifica UDO Agricola	12	158-166	2012		
40219	0	Alvarez R.C.F., Crusciol C.A.C., Nascente A.S., Rodrigues J.D., Habermann G.	Gas exchange rates, plant height, yield components, and productivity of upland rice as affected by plant regulators	Pesqui. Agropecu. Bras.	47	1455-1461	2012		
40220	0	Fonseca A.E., Arf O., Junior V.O., Buzetti S., Rodrigues R.A.F.	Soil management and topdressing nitrogen doses on upland rice [Preparo do solo e doses de nitrogenio em cobertura em arroz de terras altas]	Pesquisa Agropecuaria Tropical	42	246-253	2012		
40221	0	Binang W.B., Shiyam J.O., Ntia J.D.	Effect of seed priming method on agronomic performance and cost effectiveness of rainfed, dry-seeded NERICA rice	Research Journal of Seed Science	5	136-143	2012		
40222	0	Boldrin P.F., Faquin V., Ramos S.J., Guilherme L.R.G., Bastos C.E.A., Carvalho G.S., Costa E.T.D.S.	Selenate and selenite on yield and agronomic biofortification with selenium in rice [Selenato e selenito na producao e biofortificacao agronomica com selenio em arroz]	Pesqui. Agropecu. Bras.	47	831-837	2012		
40223	0	Ghafoor A., Murtaza G., Rehman M.Z., Saifullah, Sabir M.	Reclamation and salt leaching efficiency for tile drained saline-sodic soil using marginal quality water for irrigating rice and wheat crops	Land Degradation and Development	23	1-9	2012		
40224	0	Fogliatto S., Vidotto F., Ferrero A.	Morphological characterisation of Italian weedy rice (Oryza sativa) populations	Weed Res.	52	60-69	2012		
40225	0	Araujo J.L., Faquin V., Vieira N.M.B., de Oliveira M.V.C., Soares A.A., Rodrigues C.R., Mesquita A.C.	Rice growth and yield at different nitrate- ammonium ratios [Crescimento e Producao do Arroz Sob Diferentes Proporcoes de Nitrato e de Amonio]	Rev. Bras. Cienc. Solo	36	921-930	2012		
40226	19825583	Li-Rong Zeng, Chan Ho Park, R C Venu, Gough J., Guo-Liang Wang	Classification, expression pattern, and E3 ligase activity assay of rice U-box-containing proteins.	Mol Plant	1(5)	800-15	2008	PUB15,RLCK197,PUB17,PUB33,PUB69,PUB24,PUB16,PUB1,PUB18,PUB68,PUB64,PUB19,PUB35,PUB40,PUB9,PUB77,PUB39,PUB5,PUB67,PUB6,PUB38,PUB31,PUB32,PUB37,PUB36,PUB26,PUB28,RHS1,PUB23,PUB4,PUB10,PUB8,PUB29,RLCK306,PUB44,PUB43,RLCK91,PUB12,PUB3,PUB2,PUB73,PUB58,PUB46,PUB7,PUB71,PUB13,RLCK69,PUB21,PUB65,PUB20,PUB22,PUB25,PUB30,PUB42,PUB66,PUB45,PUB60,PUB72,PUB76,PUB14,PUB34,RLCK305,RLCK93,RLCK207,RLCK81,RLCK280,RLCK281,ELF1,RLCK194,RLCK112,PUB74,SPL11,RLCK285,RLCK307,RLCK111,PUB63	OsPUB15,  OsPUB15, PUB15,OsPUB70, PUB70, OsRLCK197, UCIP19, OsUCIP19,  OsPUB70, PUB70, OsBSK5, BSK5,OsPUB17,  OsPUB17, PUB17,OsPUB33,  OsPUB33, PUB33,OsPUB69,  OsPUB69, PUB69,OsPUB24,OsPUB16,  OsPUB16, PUB16,OsPUB1, OsPUB01, OsUFD2,  OsPUB1, PUB1,OsPUB18,  OsPUB18, PUB18,OsPUB68,  OsPUB68, PUB68,OsPUB64, OsHOP1, HOP1,  OsPUB64, PUB64,OsPUB19,  OsPUB19, PUB19,OsPUB35,  OsPUB35, PUB35,OsPUB40,  OsPUB40, PUB40,OsPUB9, OsPUB09,  OsPUB9, PUB9,OsPUB77, OsEnS-73,  OsPUB77, PUB77,OsPUB39,  OsPUB39, PUB39,OsPUB5, OsPUB05,  OsPUB5, PUB5,OsPUB67,OsPUB6, OsPUB06,  OsPUB6, PUB6,OsPUB38,  OsPUB38, PUB38,OsPUB31,  OsPUB31, PUB31,OsPUB32,  OsPUB32, PUB32,OsPUB37,  OsPUB37, PUB37,OsPUB36,  OsPUB36, PUB36,OsPUB26,  OsPUB26, PUB26,OsPUB28, OsPUB45, PUB45,  OsPUB28, PUB28,OsRHS1, OsPUB27, PUB27,OsPUB23,OsPUB4, OsPUB04,  OsPUB4, PUB4,OsPUB10,  OsPUB10, PUB10,OsPUB8, OsPUB08,  OsPUB8, PUB8,OsPUB29,  OsPUB29, PUB29,OsPUB54, PUB54, OsRLCK306,  OsPUB54, PUB54,OsPUB44,OsPUB43,  OsPUB43, PUB43,OsPUB62, PUB62, OsRLCK91,  OsPUB62, PUB62,OsPUB12,  OsPUB12, PUB12,OsPUB3, OsPUB03,  OsPUB3, PUB3,OsPUB2, OsPUB02,  OsPUB2, PUB2,OsPUB73,OsPUB58,OsPUB46,OsPUB7, OsPUB07, PUB07,OsWD40-9, OsPUB71,  OsPUB71, PUB71,OsPUB13, OsSTA182,  OsPUB13, PUB13,OsPUB48, PUB48, OsRLCK69, OsUSP10, USP10,  OsPUB48, PUB48,OsPUB21,  OsPUB21, PUB21,OsPUB65,  OsPUB65, PUB65,OsPUB20,  OsPUB20, PUB20,OsPUB22,  OsPUB22, PUB22,OsPUB25,  OsPUB25, PUB25,OsPUB30,  OsPUB30, PUB30,OsPUB42,OsPUB66,OsPUB45, P3IP1, OsP3IP1,  OsPUB45/P3IP1, PUB45/P3IP1,OsPUB60, UCIP6, OsUCIP6,  OsPUB60, PUB60,OsWD40-178, OsPUB72,  OsDWD6, DWD6,  OsPUB72, PUB72,OsPUB76,  OsPUB76, PUB76,OsPUB14,  OsPUB14, PUB14,OsPUB34,  OsPUB34, PUB34,OsPUB53, PUB53, OsRLCK305, OsMed2_1, Med2_1 ,  OsPUB53, PUB53,OsPUB50, PUB50, OsRLCK93,OsPUB47, PUB47, OsRLCK207, OsUSP29, USP29,  OsPUB47, PUB47,OsPUB55, PUB55, OsRLCK81,  OsPUB55, PUB55,OsPUB52, PUB52, OsRLCK280, OsUSP33, USP33,  OsPUB52, PUB52,OsPUB56, PUB56, OsRLCK281, OsUSP34, USP34,  OsPUB56, PUB56,OsPUB31, PUB31, OsPUB75, PUB75, TUD1, OsTUD1, DSG1,  OsPUB75, PUB75,OsPUB51, PUB51, OsRLCK194, OsUSP27, USP27,  OsPUB51, PUB51,OsPUB57, PUB57, OsRLCK112,  OsPUB57, PUB57,OsPUB74,  OsPUB74, PUB74,spl11, spl11*, OsPUB11, PUB11,  OsPUB11/SPL11, PUB11/SPL11,OsPUB61, PUB61, OsRLCK285, OsUSP35, USP35,  OsPUB61, PUB61,OsPUB49, PUB49, OsRLCK307, OsUSP38, USP38,  OsPUB49, PUB49,OsPUB59, PUB59, OsRLCK111,  OsPUB59, PUB59,OsPUB63,  OsPUB63, PUB63
40227	19021904	Xue T., Wang D., Zhang S., Ehlting J., Ni F., Jakab S., Zheng C., Zhong Y.	Genome-wide and expression analysis of protein phosphatase 2C in rice and Arabidopsis.	BMC Genomics	9	550	2008	PP2C63,PP2C53,PP2C61,PP2C66,PP2C67,PP2C14,PP2C70,PP2C10,PP2C65,PP2C77,PP2C12,PP2C44,PP2C1,PP2C46,PP2C11,PP2C58,XA46,PP2C52,PP2C1,PP2C23,PP2C40,PP2C57,PP2C55,PP2C69,PP2C50,PP2C9,PP2C75,PP2C71,PP2C78,PP2C22,PP2C38,XB15,DCW11,ABI2,PP2C56,PP2C74,PP2C19,PP2C29,PP2C32,PP2C20,PP2C5,PP2C4,PP2C2,PP2C33,PP2C39,PP2C37,PP2C41,PP2C47,PP2C72,PP2C48,PP2C18,PP2C6,PP2C42,PP2C26,PP2C64,PP2C16,PP2C28,PP2C54,PP2C34,PP2C8,PP2C43,PP2C21,PP2C62,PP2C59,PP2C24,PP2C15,PP2C30,PP2C73,PP2C31,PP2C25,SAL1,PP2C49,PP2C36,PP2C17,ABI1,PP2C45,PP2C7,PP2C27	OsPP2C63, OsPP96,OsPP2C53, OsPP81, OsABIL2, ABIL2,OsPP2C61, OsPP93,OsPP2C66, OsPP102,OsPP2C67, OsPP107,OsPP2C14, OsPP24,OsPP2C70, OsPP110,OsPP2C10, OsPP18,OsPP2C65, OsPP98,OsPP2C77, OsPP129, PP129,OsPP2C12, OsPP21,OsPP2C44, OsPP69,OsPP2C1, OsSIPP2C1, SIPP2C1, OsPP2C68, PP2C68, OsPP108,OsPP2C46, OsPP71,OsPP2C11, OsPP19,OsPP2C58, OsPP90,OsPP2C76, PP2C76, OsPP122, PP122, Xa46(t), Xa46, Doa, OsDoa,OsPP2C52, OsPP80,OsPP2C01, PP2C01, OsPP2C1, OsPP1, OsPBCP, PBCP ,OsPP2C23, OsPP34,OsPP2C40, OsPP65, PP65,OsPP2C57, OsPP89,OsPP2C55, OsPP86,OsPP2C69, OsPP109,OsPP2C50, OsPP78, OsABIL3, ABIL3,OsPP15, PP15, OsPP2C09, PP2C09, OsPP2C9, OsPP2C3,OsPP2C75, OsPP121,OsPP2C71, OsPP111,OsPP2C78, OsPP131,OsPP2C22, OsPP33,OsPP2C38, OsPP63,XB15, OsPP2C35, PP2C35, OsPP59, SIP35 ,DCW11, OsPP2C13, PP2C13, OsPP22,OsPP2C03, PP2C03, OsPP2C3, PP2C3, OsPP7, OsABI2,OsPP2C56, OsPP87,OsPP2C74, OsPP120, PP120,OsPP2C19, OsPP29,OsPP2C29, OsPP46,OsPP2C32, OsPP50,OsPP2C20, OsPP30,OsPP2C05, PP2C05, OsPP2C5, OsPP9, PPH1, TAP38, PPH1/TAP38,OsPP2C04, PP2C04, OsPP2C4, OsPP8,OsPP2C02, PP2C02, OsPP2C2, OsPP2,OsPP2C33, OsPP51,OsPP2C39, OsPP64,OsPP2C37, OsPP61,OsPP2C41, OsPP66,OsPP2C47, OsPP72,OsPP2C72, OsPP114,OsPP2C48, OsPP75,OsPP2C18, OsPP28,OsPP2C06/OsABI2, OsPP2C06, OsPP2C6, OsABI2, OsPP10, ABI2, OsABIL1, ABIL1,OsPP2C42, OsPP67,OsPP2C26, OsPP37,OsPP2C64, OsPP97,OsPP2C16, OsPP26,OsPP2C28, OsPP43,OsPP2C54, OsPP84,OsPP2C34, OsPP55, OsBIPP2C2, OsBIPP2C2a, OsBIPP2C2b, OsBIPP2C2c,OsPP2C08, PP2C08, OsPP2C8, OsPP12,OsPP2C43, OsPP68,OsPP2C21, OsPP31,OsPP2C62, OsPP95, PP95,OsPP2C59, OsPP91, PP91,OsPP2C24, OsPP35,OsPP2C15, OsPP25,OsPP2C30, OsPP48, PP48,OsPP2C73, OsPP116,OsPP2C31, OsPP49,OsPP2C25, OsPP36, PP36,OsPP2C60, PP2C60, OsPP92, PP92, OsSAL1,OsPP2C49, OsPP76, PP76,OsPP2C36, OsPP60,OsPP2C17, OsPP27,OsPP2C51, PP2C51, OsPP79, PP79, OsABI1,OsPP2C45, OsPP70,OsPP2C07, PP2C07, OsPP2C7, OsPP11, PP11,OsPP2C27, OsPP40
40228	19109415	Ding X., Richter T., Chen M., Fujii H., Young Su Seo, Xie M., Zheng X., Kanrar S., Rebecca A Stevenson, Dardick C., Li Y., Jiang H., Zhang Y., Yu F., Laura E Bartley, Chern M., Bart R., Chen X., Zhu L., William G Farmerie, Gribskov M., Jian-Kang Zhu, Michael E Fromm, Pamela C Ronald, Wen-Yuan Song	A rice kinase-protein interaction map.	Plant Physiol.	149(3)	1478-92	2009		
40229	24280589	Toda T., Toriyama K.	Re-sequencing of mitochondrial genes in a standard rice cultivar Nipponbare.	Rice (N Y)	6	2	2013	NAD4,18S  rRNA,_,26S  rRNA,_,RPL2,NAD6	nad4, nadIV,rrn18,ccmFn, ccmFn-1,rrn26,mat-r, mat-r-1,rpl2,nad6
40230	22137607	Giberti S., Bertea C.M., Narayana R., Maffei M.E., Forlani G.	Two phenylalanine ammonia lyase isoforms are involved in the elicitor-induced response of rice to the fungal pathogen Magnaporthe oryzae.	J. Plant Physiol.	169(3)	249-54	2012	_,_,_,PAL1,PAL1,_,PAL,_,_,_,_	OsPAL04, PAL04, PAL, OsPAL7, PAL7,PAL03, OsPAL8, PAL8 ,OsPAL02, PAL02, OsPAL5, PAL5, OsPAL2. PAL2, OsPAL1,OsPAL, Pal1*, Pal1, PAL, Pal_1, PalI, PAL2, OsPAL01, PAL01, OSPAL, CP-1, GP-1, OsPAL1, PAL3, OsPAL3,OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6,OsPAL05, PAL05, OsPAL3, PAL5, PAL3, OsPAL2;3, PAL2;3, OsPAL2-1, PAL2-1,OsPAL, OsPAL08, PAL2, GP-28, GP28, PAL08, OsPAL2, OsPAL8, PAL8,PAL10,PAL11,PAL09,OsPAL07, OsPAL, PAL07, OsPAL6, PAL6, PAL1, OsPAL7, PAL7
40231	18705865	Takakura Y., Fang-Sik Che, Ishida Y., Tsutsumi F., Kurotani K., Usami S., Isogai A., Imaseki H.	Expression of a bacterial flagellin gene triggers plant immune responses and confers disease resistance in transgenic rice plants.	Mol. Plant Pathol.	9(4)	525-9	2008	PAL1	OsPAL, Pal1*, Pal1, PAL, Pal_1, PalI, PAL2, OsPAL01, PAL01, OSPAL, CP-1, GP-1, OsPAL1, PAL3, OsPAL3
40232	17415624	Hai Hong Bi, Ren Sen Zeng, Li Ming Su, An M., Shi Ming Luo	Rice allelopathy induced by methyl jasmonate and methyl salicylate.	J. Chem. Ecol.	33(5)	1089-103	2007	PAL1,_	OsPAL, Pal1*, Pal1, PAL, Pal_1, PalI, PAL2, OsPAL01, PAL01, OSPAL, CP-1, GP-1, OsPAL1, PAL3, OsPAL3,C4H, OsC4H
40233	15838683	Mase K., Sato K., Nakano Y., Nishikubo N., Tsuboi Y., Zhou J., Kitano H., Katayama Y.	The ectopic expression of phenylalanine ammonia lyase with ectopic accumulation of polysaccharide-linked hydroxycinnamoyl esters in internode parenchyma of rice mutant Fukei 71.	Plant Cell Rep.	24(8)	487-93	2005	D12,GLN1;1,PAL1	d12(d50), dwf11, d50, d12, d32, F71, DMT9,OsGLN1;1, GS1, RGS28, OsGS1;1, GS1;1, OsGS, GS1, OsGS1, GLN1-1, OsGS1-1, GS1-1, GS1.1, OsGS1.1,OsPAL, Pal1*, Pal1, PAL, Pal_1, PalI, PAL2, OsPAL01, PAL01, OSPAL, CP-1, GP-1, OsPAL1, PAL3, OsPAL3
40234	14714141	L Wang, C An, W Qian, T Liu, J Li, Z Chen	Detection of the putative cis-region involved in the induction by a Pyricularia oryzae elicitor of the promoter of a gene encoding phenylalanine ammonia-lyase in rice.	Plant Cell Rep.	22(7)	513-8	2004	PAL1	OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6
40235	12060286	Sakurai N., Katayama Y., Yamaya T.	Overlapping expression of cytosolic glutamine synthetase and phenylalanine ammonia-lyase in immature leaf blades of rice.	Physiol Plant	113(3)	400-408	2001	GLN1;1,PAL,PAL1,PAL1	OsGLN1;1, GS1, RGS28, OsGS1;1, GS1;1, OsGS, GS1, OsGS1, GLN1-1, OsGS1-1, GS1-1, GS1.1, OsGS1.1,OsPAL, OsPAL08, PAL2, GP-28, GP28, PAL08, OsPAL2, OsPAL8, PAL8,OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6,OsPAL, Pal1*, Pal1, PAL, Pal_1, PalI, PAL2, OsPAL01, PAL01, OSPAL, CP-1, GP-1, OsPAL1, PAL3, OsPAL3
40236	22243810	Liu H., Li X., Xiao J., Wang S.	A convenient method for simultaneous quantification of multiple phytohormones and metabolites: application in study of rice-bacterium interaction.	Plant Methods	8(1)	2	2012	NCED1,AO1,_,KS4,ABA1,ICS1,AOS2,CPS4,NCED1,CHS,NIT1,PAL1	OSNCED1, OsNCED-1, OsNCED3, OsNced3, NCED3, OsNCED9, NCED9,AAO3, OsAAO3, OsAO1, AAO2, OsAAO2,Lox2:Os:1, OsLOX9, LOX9, OsLOX8, LOX8, OsLOX2, LOX2, OsRLL, OsHI-LOX, HI-LOX, RLL2 LOX, RLL2, Lox2osPil, OsLOX2;1, LOX2;1, OsLOX1, OsLOX7, LOX7,OsKS4, KS4, KSL4, OsKSL4, DTS2, OsDTS2, OsTPS16, TPS16, TPS8, OsTPS8,OsABA1, Zep1, OsAba1, Aba2, OsAba2, OsZep1, Zep, OsZep, Aba1, OsABA2, Osaba1, OsZEP-1, OsZEP, OSZEP1, ZEP1, ZEP,OsICS1, OsICS, ICS,OsAOS2, CYP74A2, OsAOS, OsAOS1,OsCPS4, CYC1, OsCYC1, OsCyc1, cpsl3, OsCPSL3, OsCPSsyn, OsCyc1/OsCPS4, OsTPS15, Os-CPS4, TPS11, OsTPS11,OsNCED1, OsCCD4a, CCD4a,CHS*, Oschs, chs, chas, OsCHS, OsCHS1, CHS1, OsPKS26, PKS26, OsCHS24, CHS24, OsCHS27, CHS27,OsNIT1, OsNIT2, NIT2, OsNIT4A, NIT4A,OsPAL, Pal1*, Pal1, PAL, Pal_1, PalI, PAL2, OsPAL01, PAL01, OSPAL, CP-1, GP-1, OsPAL1, PAL3, OsPAL3
40237	20807375	Shen X., Liu H., Yuan B., Li X., Xu C., Wang S.	OsEDR1 negatively regulates rice bacterial resistance via activation of ethylene biosynthesis.	Plant Cell Environ.	34(2)	179-91	2011	MPK6,ACDR1,AOS2,GH3-8,PAL1,ACS5,ACS2,ACS4,_,DR10,PR10A,NH1,ERF93,EIL1,WRKY13,SSG6,PR1A,PR1B,CHT1,ACS1,PR5	OsMPK6, OsDR6, DR6, OsMPK4, MPK4, OsMAPK4, MAPK4,OsEDR1, OsACDR1, EDR1, OsMAPKKK1, MAPKKK1, SPL3, OsSPL3,OsAOS2, CYP74A2, OsAOS, OsAOS1,OsGH3-8, OsMGH3, OsGH3.8, GH3.8, OsGH3-2,OsPAL, Pal1*, Pal1, PAL, Pal_1, PalI, PAL2, OsPAL01, PAL01, OSPAL, CP-1, GP-1, OsPAL1, PAL3, OsPAL3,OsACS5, OS-ACS5, OsBphi008a,OsACS2, Os-ACS2,OsACS4, OS-ACS4,Lox2:Os:1, OsLOX9, LOX9, OsLOX8, LOX8, OsLOX2, LOX2, OsRLL, OsHI-LOX, HI-LOX, RLL2 LOX, RLL2, Lox2osPil, OsLOX2;1, LOX2;1, OsLOX1, OsLOX7, LOX7,OsDR10,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2, DLN5, OsDLN5,  OsBTBA1, BTBA1,OsERF1, ERF1, OsERF#093, OsERF093, OsERF93, AP2/EREBP#168, AP2/EREBP168,OsEIL1, EIN3, OsEIN3, MHZ6, OsEIL1a, EIL1a, OsEIL1b, EIL1b,OsWRKY13,OsACS6, ACS6,OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1, OsPR1b, PR1alpha, OsPR1alpha,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1, OsPR1a, PR1a,Cht1*(Chi1), Ch16, Cht1, CHT-1, CH16, RC24, OsChia1a, OsChia1, Chi1, Cht1*, Chi-1, Cht-1, Cht1, RCC1, OsCht-1, PR3, OsPR3,ACC1*, OsACS1, Os-ACS1, ACC1, OsACC1,OsPR5, Pir2, PR-5, PR5-1
40238	0	XU YuFeng, ZHOU GongKe, ZHOU Lu, Li YiQin, LIU JinYuan	Expression patterns of the rice class I metallothionein gene family in response to lead stress in rice seedlings and functional complementation of its members in lead-sensitive yeast cells.	Chinese Science Bulletin	52(16)	2203-2209	2007		
40239	16008091	Gong-Ke Zhou, Yu-Feng Xu, Jin-Yuan Liu	Characterization of a rice class II metallothionein gene: tissue expression patterns and induction in response to abiotic factors.	J. Plant Physiol.	162(6)	686-96	2005	MTII1A	OsMT4, OsMT-II-1a, MT4, MT-II-1a
40240	0	Ichitani K., Yamaguchi D., Taura S., Fukutoku Y., Onoue M., Shimizu K., Hashimoto F., Sakata Y., Sato M.	Genetic analysis of ion-beam induced extremely late heading mutants in rice.	Breed. Sci.	64	222-230	2014	EHD3,FLT2,FLT1	Ehd3, OsPHD36, PHD36,,
40241	24728832	Li J.Y., Liu J., Dong D., Jia X., McCouch S.R., Kochian L.V.	Natural variation underlies alterations in Nramp aluminum transporter (NRAT1) expression and function that play a key role in rice aluminum tolerance.	Proc. Natl. Acad. Sci. U.S.A.	111(17)	6503-8	2014	NRAMP4,ALS1	OsNRAMP4, Nrat1, Nramp6, OsNRAT1, NRAT1, FCO5,OsALS1, OsABCB25, ABCB25
40242	24755456	Fu Z., Yu J., Cheng X., Zong X., Xu J., Chen M., Li Z., Zhang D., Liang W.	The Rice Basic Helix-Loop-Helix Transcription Factor TDR INTERACTING PROTEIN2 Is a Central Switch in Early Anther Development.	Plant Cell	26(4)	1512-1524	2014	GAMYB,EAT1,PTC1,BHLH142,CP1,RADC1,AP37 ,UDT1,TDR	OsGAMYB, GAM1, OsGAMyb, Os-MYBGA, Os GAMYB, OsMYBGA, MYBGA, Os2R_MYB15, 2R_MYB15 ,OsEAT1, OsbHLH141, EAT1/DTD1, bHLH141, DTD1, DTD, DLN120, OsDLN120,OsMS1, tms9-1, OsPTC1, MS1, TMS9-1, OsTMS9-1,OsbHLH142, bHLH142, TIP2, OsTIP2, TIP2/TDR/bHLH142,OsCP1, Os CP1,OsAP25, Radc1, OsRADC1, AP25,OsAP37,Udt1, bHLH164, OsUDT1, OsbHLH164 ,tdr, OsbHLH005, bHLH005, OsbHLH5, bhlh5, TDR1, OsTDR, OsTDR1, OsMYC5, MYC5
40243	24760826	Vaughn J.N., Bennetzen J.L.	Natural insertions in rice commonly form tandem duplications indicative of patch-mediated double-strand break induction and repair.	Proc. Natl. Acad. Sci. U.S.A.	111(18)	6684-9	2014		
40244	24728647	Henry I.M., Nagalakshmi U., Lieberman M.C., Ngo K.J., Krasileva K.V., Vasquez-Gross H., Akhunova A., Akhunov E., Dubcovsky J., Tai T.H., Comai L.	Efficient Genome-Wide Detection and Cataloging of EMS-Induced Mutations Using Exome Capture and Next-Generation Sequencing.	Plant Cell	26(4)	1382-1397	2014		
40245	24753573	Gross B.L., Zhao Z.	Archaeological and genetic insights into the origins of domesticated rice.	Proc. Natl. Acad. Sci. U.S.A.	111(17)	6190-7	2014		
40246	24781115	Wang E., Yu N., Bano S.A., Liu C., Miller A.J., Cousins D., Zhang X., Ratet P., Tadege M., Mysore K.S., Downie J.A., Murray J.D., Oldroyd G.E., Schultze M.	A H+-ATPase That Energizes Nutrient Uptake during Mycorrhizal Symbioses in Rice and Medicago truncatula.	Plant Cell	26(4)	1818-1830	2014	AHA8	OSA8, OsA8, A8, osAHA8, AHA8, Os-HA1, OsHA1
40247	24692424	Lv Q., Zhong Y., Wang Y., Wang Z., Zhang L., Shi J., Wu Z., Liu Y., Mao C., Yi K., Wu P.	SPX4 Negatively Regulates Phosphate Signaling and Homeostasis through Its Interaction with PHR2 in Rice.	Plant Cell	26(4)	1586-1597	2014	SPX4,PHR2	OsSPX4, Os-SPX4,OsPHR2, Os-PHR2
40248	24777451	Sun H., Qian Q., Wu K., Luo J., Wang S., Zhang C., Ma Y., Liu Q., Huang X., Yuan Q., Han R., Zhao M., Dong G., Guo L., Zhu X., Gou Z., Wang W., Wu Y., Lin H., Fu X.	Heterotrimeric G proteins regulate nitrogen-use efficiency in rice.	Nat. Genet.	46(6)	652-6	2014	RGB1,D1,DEP1	OsWD40-80, RGbeta1, OsRGB1,  OsDWD38, DWD38,d1, GPA1, GA1, OsGA1, RGA1, dwf1, XA7, RGA, D1/RGA1, D89, TGW5, OsTGW5, SRG5, OsSRG5,OsDEP1, EP, qPE9-1, DN1, DEP1/DN1/qPE9-1, qNGR9, qDEP1, RGG4/DEP1/DN1/qPE9-1/OsGGC3, RGG4, OsDN1, OsGGC3, GGC3
40249	24856112	Asahina M., Tamaki Y., Sakamoto T., Shibata K., Nomura T., Yokota T.	Blue light-promoted rice leaf bending and unrolling are due to up-regulated brassinosteroid biosynthesis genes accompanied by accumulation of castasterone.	Phytochemistry	104	21-9	2014	CPD2,CPD1,BRD1,D61	OsCPD2, CYP90A4, CYP90A4/OsCPD2,OsCPD1, CYP90A3, CYP90A3/OsCPD1, CPD, OsCPD2, CPD2,brd1, OsDWARF, DWARF, OsBR6ox, BR6ox, CYP85A1, CYP85A4, OsDWF, CYP85A1/OsDWARF, OsBRD1, OsCYP85A1,d61*, dwf42, d61, OsBRI1, OSBRI1, BRI1, Os BRI1, Osbri1, OsBRKq1, BRKq1
40250	24875416	Li F.P., Yoon M.Y., Li G., Ra W.H., Park J.W., Kwon S.J., Kwon S.W., Ahn I.P., Park Y.J.	Transcriptome analysis of grain-filling caryopses reveals the potential formation mechanism of the rice sugary mutant.	Gene	546(2)	318-26	2014	AGPS2	OsAGPS2a, AGPS2A, AGPS2B, OsAGPS2, osagps2, APS2, APS2a, APS2b, AGPS2a, APGS2b, OsAGPS2b, AGPP, GAS8, OsAPS2, OsAPS2a, OsAPS2b
40251	24961368	Chen A., Li C., Hu W., Lau M.Y., Lin H., Rockwell N.C., Martin S.S., Jernstedt J.A., Lagarias J.C., Dubcovsky J.	Phytochrome C plays a major role in the acceleration of wheat flowering under long-day photoperiod.	Proc. Natl. Acad. Sci. U.S.A.	111(28)	10037-44	2014		
40252	24908251	Chen W., Gao Y., Xie W., Gong L., Lu K., Wang W., Li Y., Liu X., Zhang H., Dong H., Zhang W., Zhang L., Yu S., Wang G., Lian X., Luo J.	Genome-wide association analyses provide genetic and biochemical insights into natural variation in rice metabolism.	Nat. Genet.	46(7)	714-21	2014	GAUT17,UGT72F1,_,_,UGT707A2,_,UGT706D1,_,TPS29,C,NOMT,_,COMT7,PDX1.3B,TDC6,CYP51G3,CYP72A1,_,_,PDX1.3A,CYP71C3,ATASE1,CYP76M7,TBT2,_,_,_,_,_,_,_,_,AHT2,COMTL4,_	OsGAUT17,,,OsMaT-3,UGT, OsUGT707A2,,UGT, OsUGT706D1,,OsTPS29, OsCAS, CAS, OsTPS3, TPS3, TPS33, OsTPS33,C, Cp, OsC1, Os-C1, C1, OsMyb6, Myb6, OsPL6, PL6, OsGL1E, GL1E, Os2R_MYB63, 2R_MYB63, OsC1PLSr, C1PLSr,OsNOMT, COMTL3, OsCOMTL3, OsCOMT29, COMT29,,OsASMT2, ASMT2, OsCOMT7,OsPDX1.3b, OsPDX1.2, PDX1.2,OsTDC6,OsCYP51G3,CYP72A1,UGT,OsSTA240, OsMATE39, MATE39,OsPDX1.3a, OsPDX1.1, PDX1.1,OsCYP71C3,Atase1, OsATASE1,OsCYP76M7, CYP76M10, OsCYP76M10, OsCYP76-4, CYP76-4,Os-TBT2, OsTBT2,UGT,UGT,UGT,OsMaT-2,,,,UGT,OsAHT2,OsCOMTL4, COMT2, OsCOMT2,OsAT4c, AT4c
40253	25243661	Jahani M., Nematzadeh G., Dolatabadi B., Hashemi S.H., Mohammadi-Nejad G.	Identification and validation of functional markers in a global rice collection by association mapping.	Genome	57(6)	355-62	2014		
40254	24951508	Liang C., Wang Y., Zhu Y., Tang J., Hu B., Liu L., Ou S., Wu H., Sun X., Chu J., Chu C.	OsNAP connects abscisic acid and leaf senescence by fine-tuning abscisic acid biosynthesis and directly targeting senescence-associated genes in rice.	Proc. Natl. Acad. Sci. U.S.A.	111(27)	10013-8	2014	ABA1,KAT1,NCED1,_,NCED1,AMTR1,NAC58,NYC1,NYC3,RCCR1,NRAMP1,ICL,NCED3,HKT6,AGA1,PHO1;3,_,PTR2,SGR	OsABA1, Zep1, OsAba1, Aba2, OsAba2, OsZep1, Zep, OsZep, Aba1, OsABA2, Osaba1, OsZEP-1, OsZEP, OSZEP1, ZEP1, ZEP,OsI57, I57, OsKAT1, OsACAA1, ACAA1,OSNCED1, OsNCED-1, OsNCED3, OsNced3, NCED3, OsNCED9, NCED9,OsPTR3, PTR3, PTR3-A,OsNCED1, OsCCD4a, CCD4a,Osh36, OsH36, H36, OsAMTR1,OsNAP, NAP, ONAC058, ONAC58, Os PS1, PS1, OsCTb1, CTb1,nyc1, OsNYC1,nyc3, OsNYC3, PPH,OsRCCR1, OsRCCR, RCCR,OsNramp1, OsNRAMP1, OsNramp6,OsEnS-107, EnS-107, OsI85, I85, OsICL, Osl85, l43, Osl43, OsL85,OSNCED3, OsNCED-3, OsNCED3, OsNCED3a, NCED3a, OsNCED4, NCED4, OsNECD2, OsNCED2b, NCED2b ,OsHKT6, OsHKT1;3, HKT1;3, OsHKT1;3_FL, OsHKT1;3_V1, OsHKT1;3_V2, OsHKT1;3_V3, OsHKT1;3_V4, OsHKT1;3_V5,Osh69, h69, OsAGA1, OsRS6, RS6,OsPHO1;3, OsPHT1,OsPOT, POT, OsIROPT1, IROPT1,OsPTR2, OsNPF2.2, NPF2.2,sgr(t), sgr, OsSGR, OsSgr, SGR1, OsSGR1
40255	24907341	Li C.H., Wang G., Zhao J.L., Zhang L.Q., Ai L.F., Han Y.F., Sun D.Y., Zhang S.W., Sun Y.	The Receptor-Like Kinase SIT1 Mediates salt sensitivity by Activating MAPK3/6 and Regulating Ethylene Homeostasis in Rice.	Plant Cell	26(6)	2538-2553	2014	MSRMK2,DSG1,SIT3,SIT1,_	OsMSRMK2, OsMAPK5, OsMAP1, OsMPK3, OsBIMK1, OsMAPK2, MPK5, BIMK1, MAPK2, MAPK5, MPK3, OsMPK5, OsMAPK3, OsMAPK5b, MAPK3,OsMAPK6, MAPK6, OsMPK6, OsSIPK, SIPK, OsMAPK1, MAPK1, MPK1, OsMPK1, MPK6, OsDSG1,OsSIT3, OsBDR1, BDR1,OsSIT1,SIT2
40256	24982153	Xiong W., He L., Lai J., Dooner H.K., Du C.	HelitronScanner uncovers a large overlooked cache of Helitron transposons in many plant genomes.	Proc. Natl. Acad. Sci. U.S.A.	111(28)	10263-8	2014		
40257	24949534	Kim S., Park J., Lee J., Shin D., Park D.S., Lim J.S., Choi I.Y., Seo Y.S.	Understanding pathogenic Burkholderia glumae metabolic and signaling pathways within rice tissues through in vivo transcriptome analyses.	Gene	547(1)	77-85	2014		
40258	24982146	Wang Y., Fan X., Lin F., He G., Terzaghi W., Zhu D., Deng X.W.	Arabidopsis noncoding RNA mediates control of photomorphogenesis by red light.	Proc. Natl. Acad. Sci. U.S.A.	111(28)	10359-64	2014	_	OsHID1
40259	24911626	Yu M., Yu J., Gu C., Nie Y., Chen Z., Yin X., Liu Y.	De novo sequencing and transcriptome analysis of Ustilaginoidea virens by using Illumina paired-end sequencing and development of simple sequence repeat markers.	Gene	547(2)	202-10	2014		
40260	24950892	Jiang G., Xiang Y., Zhao J., Yin D., Zhao X., Zhu L., Zhai W.	Regulation of Inflorescence Branch Development in Rice Through a Novel Pathway Involving the Pentatricopeptide Repeat Protein sped1-D.	Genetics	197(4)	1395-1407	2014	_,SPED1,NAL3,RFL,NAL2	GID1L2,OsSPED1, PLS22, OsPLS22,nal3(nal2), nal2, nal3, cul3, OsWOX3A, WOX3A, WOX3, OsWOX3, OsNS, OsNS1/OsNS2, OsPRS,RFL, OSL, FL, APO2, APO2/RFL, SSC, SSC/RFL/APO2, OsRFL, OsFL, OsAPO2, OsSSC,nal2, nal3, cul2, OsWOX3A, WOX3A, Os NS, NS, OsNS, OsWOX3, OsNS1/OsNS2, OsPRS
40261	24982173	Li G., Liang W., Zhang X., Ren H., Hu J., Bennett M.J., Zhang D.	Rice actin-binding protein RMD is a key link in the auxin-actin regulatory loop that controls cell growth.	Proc. Natl. Acad. Sci. U.S.A.	111(28)	10377-82	2014	ARF24,ARF1,PIN1B,LRA1,BUI1	OsARF24,OsARF1, arf1, OsARF23, ARF23,PIN1A, OsPIN1A, OsPIN1a, REH1, OsPIN1, OsPIN1b, REH1/OsPIN1,OsPIN2, PIN2, OsLRA1, WAR1, OsWAR1,BUI1, FH5, FH5/BUI1, RMD, OsRMD, OsFH5, FH5/RMD 
40262	24894043	Ko S.S., Li M.J., Sun-Ben Ku M., Ho Y.C., Lin Y.J., Chuang M.H., Hsing H.X., Lien Y.C., Yang H.T., Chang H.C., Chan M.T.	The bHLH142 Transcription Factor Coordinates with TDR1 to Modulate the Expression of EAT1 and Regulate pollen Development in Rice.	Plant Cell	26(6)	2486-2504	2014	GAMYB,EAT1,UDT1,BHLH142,AP37 ,RADC1,TDR	OsGAMYB, GAM1, OsGAMyb, Os-MYBGA, Os GAMYB, OsMYBGA, MYBGA, Os2R_MYB15, 2R_MYB15 ,OsEAT1, OsbHLH141, EAT1/DTD1, bHLH141, DTD1, DTD, DLN120, OsDLN120,Udt1, bHLH164, OsUDT1, OsbHLH164 ,OsbHLH142, bHLH142, TIP2, OsTIP2, TIP2/TDR/bHLH142,OsAP37,OsAP25, Radc1, OsRADC1, AP25,tdr, OsbHLH005, bHLH005, OsbHLH5, bhlh5, TDR1, OsTDR, OsTDR1, OsMYC5, MYC5
40263	24906292	Quilichini T.D., Grienenberger E., Douglas C.J.	The biosynthesis, composition and assembly of the outer pollen wall: A tough case to crack.	Phytochemistry			2014	MS2,DFR2 ,C6,LAP6,CYP704B2	OsMS2, OsDPW, DPW, DPW1, OsDPW1, OsFAR2, FAR2,OsTKPR1, TKPR1, OsDFR2, OS-DFR2, OsDFR2A, DFR2A, OsCCRL1, CCRL1,Osc6, Osg6B, OsG6B, OsLTPG25, OsLTPg25, OsLtpVII.1, Os C6,OsPKS1, PKS1, YY2, OsPKS21, PKS21, OsLAP6/OsPKS1, OsLAP6, OsCHS22, CHS22,OsCYP704B2
40264	24905652	Ramkumar G., Madhav M.S., Rama Devi SJ., Manimaran P., Mohan K.M., Prasad M.S., Balachandran S.M., Neeraja C.N., Sundaram R.M., Viraktamath B.C.	Nucleotide diversity of Pita, a major blast resistance gene and identification of its minimal promoter.	Gene	546(2)	250-6	2014	PITA	Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30, Trx30
40265	24887487	Agarwal S., Tripura Venkata VG., Kotla A., Mangrauthia S.K., Neelamraju S.	Expression patterns of QTL based and other candidate genes in Madhukar ~ Swarna RILs with contrasting levels of iron and zinc in unpolished rice grains.	Gene	546(2)	430-6	2014	NAS3,YSL15,ZIP8,IRT2,IRT1,NRAMP1,NAS1,DMAS1,NAS2,YSL2,YSL1	OsNAS3,OsYSL15, OsYs7,OsZIP8, OsZIP1, ZIP1, OsZIP13, ZIP13,OsIRT2, OsIRT1, OsZIP15, ZIP15,OsIRT1, ZIP10, OsZIP10, OsZIP12, ZIP12,OsNramp1, OsNRAMP1, OsNramp6,OsNAS1,OsDMAS1, OsAKR5, AKR5,OsNAS2, OsNAS1,OsYSL2, Os-YSL2, OsYs6 ,OsYSL1, OsYs1
40266	25035404	Xie K., Chen J., Wang Q., Yang Y.	Direct phosphorylation and activation of a mitogen-activated protein kinase by a calcium-dependent protein kinase in rice.	Plant Cell	26(7)	3077-89	2014	MSRMK2,CDPK18	OsMSRMK2, OsMAPK5, OsMAP1, OsMPK3, OsBIMK1, OsMAPK2, MPK5, BIMK1, MAPK2, MAPK5, MPK3, OsMPK5, OsMAPK3, OsMAPK5b, MAPK3,OsCDPK18, OsCPK18, CDPK5, OsCDPK5, CPK18
40267	25002488	Hu L., Li N., Xu C., Zhong S., Lin X., Yang J., Zhou T., Yuliang A., Wu Y., Chen Y.R., Cao X., Zemach A., Rustgi S., von Wettstein D., Liu B.	Mutation of a major CG methylase in rice causes genome-wide hypomethylation, dysregulated genome expression, and seedling lethality.	Proc. Natl. Acad. Sci. U.S.A.	111(29)	10642-7	2014	MET1A,MET1B	OsMET1a, OsMET1-1, MET1a, MET1-1, OsMET1, OsDMT702, DMT702,OsMET1b, OsMET1-2, MET1b, MET1
40268	25064006	Wang M., Yu Y., Haberer G., Marri P.R., Fan C., Goicoechea J.L., Zuccolo A., Song X., Kudrna D., Ammiraju J.S., Cossu R.M., Maldonado C., Chen J., Lee S., Sisneros N., de Baynast K., Golser W., Wissotski M., Kim W., Sanchez P., Ndjiondjop M.N., Sanni K., Long M., Carney J., Panaud O., Wicker T., Machado C.A., Chen M., Mayer K.F., Rounsley S., Wing R.A.	The genome sequence of African rice (Oryza glaberrima) and evidence for independent domestication.	Nat. Genet.	46(9)	982-8	2014	QSH1,EP3,SH1,DEP1,SH4,EP2,SD1,NAC6,XA3	qSH1, qsh1, qSH-1, RIL1, OsRIL1 ,EP3/LP, LP, OsLP, OsFbox076, OsFbox76, Os_F0106, OsEP3,  OsFBK5, FBK5,YAB2, OsYAB2, OsSh1, Sh1, OsFIL2, OsSH1, Osh1,OsDEP1, EP, qPE9-1, DN1, DEP1/DN1/qPE9-1, qNGR9, qDEP1, RGG4/DEP1/DN1/qPE9-1/OsGGC3, RGG4, OsDN1, OsGGC3, GGC3,sh4, SH4, SHAT2, SHA1, qSH4, QSH4, OsSh4, Sh4, Osh4, OsMSL23, MSL23,ep2, EP2/DEP2/SRS1, SRS1/DEP2, DEP2, SRS1, OsSRS1, CL7(t), OsRELA, RELA,sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2, OsPHQ1, OsPHq1, PHq1,OsNAC6, ONAC048, NAC48, SNAC2, SNAC2/OsNAC6, OsNAC6/ONAC048, OsSNAC2, SNAC-2, OsSNAC-2, OsNAC2,Xa-3, Xa3 (Xa4b, Xa6, Xa9, Xa w), Xa3, Xaw, Xa6, Xa9, Xa4-b, XA26, Xa26(t), Xa26(t)*, Xa26, RKb, MRKb, MRKB, TRKb, Xa3/Xa26
40269	25082857	Jiao Y., Li J., Tang H., Paterson A.H.	Integrated syntenic and phylogenomic analyses reveal an ancient genome duplication in monocots.	Plant Cell	26(7)	2792-802	2014		
40270	25014137	Akkuratov E.E., Walters L., Saha-Mandal A., Khandekar S., Crawford E., Zirbel C.L., Leisner S., Prakash A., Fedorova L., Fedorov A.	Bioinformatics analysis of plant orthologous introns: identification of an intronic tRNA-like sequence.	Gene	548(1)	81-90	2014		
40271	25012190	Olek A.T., Rayon C., Makowski L., Kim H.R., Ciesielski P., Badger J., Paul L.N., Ghosh S., Kihara D., Crowley M., Himmel M.E., Bolin J.T., Carpita N.C.	The structure of the catalytic domain of a plant cellulose synthase and its assembly into dimers.	Plant Cell	26(7)	2996-3009	2014	CESA8	OsCesA8, OsCESA8, OS_CESA08, CesA8
40272	25038275	Yang J., Zhang H.M., Liu X.Y., Li J., Lv M.F., Li P.P., Dai L.Y., Chen J.P.	Identification of 23 novel conserved microRNAs in three rice cultivars.	Gene	548(2)	285-93	2014	_,_,_,_,_,_,_,_,_,_,MIR160B,_,MIR5788,_,_,_,_,_,_,_,_,_,_	NolmiR-23,NolmiR-432,NolmiR-86,NolmiR-95,NolmiR-150,NolmiR-62,NolmiR-74,NolmiR-50,NolmiR-142,NolmiR-162,miR160b, osa-miR160b, osa-MIR160b, NolmiR-36osa-miR160b-3p osa-miR160b-5p, OsMIR160b,NolmiR-349,miR5788, osa-miR5788, osa-MIR5788, NolmiR-3,NolmiR-45,NolmiR-53,NolmiR-56,NolmiR-58,NolmiR-63,NolmiR-101,NolmiR-112,NolmiR-185,NolmiR-230,NolmiR-105
40273	25028496	Sang D., Chen D., Liu G., Liang Y., Huang L., Meng X., Chu J., Sun X., Dong G., Yuan Y., Qian Q., Li J., Wang Y.	Strigolactones regulate rice tiller angle by attenuating shoot gravitropism through inhibiting auxin biosynthesis.	Proc. Natl. Acad. Sci. U.S.A.	111(30)	11199-204	2014	D14,IAA20,D3,D27,LA1	d14(d10), dwf13, d10, d14, D88, HTD2, OsHTD2, OsD14, qPPB3, D88/D14, HTD4,OsIAA20,d3, dwf3, D3/OsMAX2, Os_F0760, SOL1, OsORE9, ORE9, MAX2, OsRFPH2-10, RFPH2-10, OsD3,  OsFBL27, FBL27,d27(d t), dt, dwf23, d27, OsD27,OsLa1
40274	25096783	Li J., Long Y., Qi G.N., Li J., Xu Z.J., Wu W.H., Wang Y.	The Os-AKT1 Channel Is Critical for K+ Uptake in Rice Roots and Is Modulated by the Rice CBL1-CIPK23 Complex.	Plant Cell	26(8)	3387-402	2014	CK1,PK4,CIPK23,AKT1,CBL1	OsCK1, CIPK31, OsCIPK31, Os-CIPK3, OsSnRK3.11, SnRK3.11,OsCIPK19, OsPK4, OsPK04, Os-CIPK19, CIPK19, OsSnRK3.20, SnRK3.20,OsCIPK23, Os-CIPK23, OsSnRK3.23, SnRK3.23,OsAKT1, Os-AKT1,OsCBL1, Os-CBL1
40275	25106855	Cheng S., Huang Y., Zhu N., Zhao Y.	The rice WUSCHEL-related homeobox genes are involved in reproductive organ development, hormone signaling and abiotic stress response.	Gene	549(2)	266-74	2014	WOX6,_,WOX11,TAB1,WOX4,NAL3,WOX8,WOX10,DWT1,NAL2,QHB	OsWOX6, Os WOX6, OsWOX12B, WOX12B,OsWOX9D,OsWOX11, Os WOX11, OsWOX12A,Os WUS, WUS, OsWOX1, WOX1, OsWUS, OsTAB, TAB1/WUS, MOC3, MOC3/OsWUS, SRT1, MOC3/TAB1/SRT1, DC1, OsDC1, DAP1, OsDAP1,OsWOX4, Os WOX4,nal3(nal2), nal2, nal3, cul3, OsWOX3A, WOX3A, WOX3, OsWOX3, OsNS, OsNS1/OsNS2, OsPRS,OsWOX8, Os WOX8, OsWOX13, WOX13, OsWOX9B,OsWOX10, Os WOX10, OsWOX11/12, OsWOX11,OsWOX7, Os WOX7, WOX7, OsWOX9A, DWT1/WOX9A, OsDWT1, WOX9A,nal2, nal3, cul2, OsWOX3A, WOX3A, Os NS, NS, OsNS, OsWOX3, OsNS1/OsNS2, OsPRS,OsQHB, OsWOX9, WOX9, WOX5, Os WOX5, OsWOX5, QHB/OsWOX9
40276	25178525	Sun X., Ling S., Lu Z., Ouyang Y.D., Liu S., Yao J.	OsNF-YB1, a rice endosperm-specific gene, is essential for cell proliferation in endosperm development.	Gene	551(2)	214-21	2014	ORC2,PIS1,FST ,TA2,ORC1,RB1,CYCB1;1,E2F2,HAP3K,E2F1,FIE1	OsORC2,Orysa;Rb2, RBR2, OsRBR1, RBR1, OsPIS1, RB2, OsRB2, RB1, OsRB1,OsMADS29, MADS29, OsFST,ROS1A, ROS1a, DME1, OsROS1A, OsROS1, ROS1, mOsROS1, ROS1A/DNG702, DNG702, OsDNG702,OsORC1,Orysa;Rb1, OsRBR1, RBR1, OsRBR2, RBR2,CycB1;1, CycB1;os;1, Orysa;CycB1;1, OsCycB1;1, CyclaZm, CYCIaZm, OsCYCIaZm, OsCYCB1;4,Orysa;E2F2, OsE2F2, DLN252, OsDLN252, OsE2Fa-2, E2Fa-2,OsHAP3K/OsNF-YB1, OsHAP3K, OsNF-YB1, NF-YB1, nf-yb1, OsLEC1, OsNF-YB-1, NFYB1, OsEnS-41,Orysa;E2F1, OsE2F1, DLN58, OsDLN58, OsE2Fa-1, E2Fa-1,OsFIE1, OsWD40-154, OsEnS-116, OsFIE1/OsWD40-154, WD40-154 
40277	25114224	Xu S., Zhu D., Zhang Q.	Predicting hybrid performance in rice using genomic best linear unbiased prediction.	Proc. Natl. Acad. Sci. U.S.A.	111(34)	12456-61	2014		
40278	24781994	Song F.S., Ni D.H., Li H., Duan Y.B., Yang Y.C., Ni J.L., Lu X.Z., Wei P.C., Li L., Yang J.B.	A novel synthetic Cry1Ab gene resists rice insect pests.	Genet. Mol. Res.	13(2)	2394-408	2014		
40279	24694754	Xia J., Yamaji N., Ma J.F.	An appropriate concentration of arginine is required for normal root growth in rice.	Plant Signal Behav	9	e28717	2014	ASL1	OsASL1, OsASL1.1, OsASL1.2, OsAL1, red1
40280	24686568	Meguro A., Sato Y.	Salicylic acid antagonizes abscisic acid inhibition of shoot growth and cell cycle progression in rice.	Sci Rep	4	4555	2014	KRP4,KRP6,CDC2-1,KRP5,CDC2-2	OsiICK6, Orysa;KRP4, OrysaICK6, Orysa;ICK6, OsKRP4, OsICK6, ICK6,OsiICK4, Orysa;KRP6, OrysaICK4, Orysa;ICK4, OsKRP6, OsKRP5,cdc2Os-1, CDC2Os-1, CDKA-1, CDKA;1, Orysa;CDKA;1, OsCDKA;1, cdc2Os1, Rcdc2-1, OsCDKA1, CDKA1, CDC20S-1, OsCDC20S-1 ,OsiICK5, Orysa;KRP5, OrysaICK5, Orysa;ICK5, OsKRP5, OsICK5, ICK5 ,cdc2Os-2, CDC2Os-2, CDKA-2, CDKA;2, Orysa;CDKA;2, Rcdc2-2, OsCDKA;2, OsCDKA2, CDKA2, CDKA;1, OsCDKA;1, CDC20S-2, OsCDC20S-2
40281	24908504	Kobayashi T., Nishizawa N.K.	Iron sensors and signals in response to iron deficiency.	Plant Sci.	224	36-43	2014	HRZ1,ABI3,HRZ2	OsHRZ1,  OsRING149, RING149,OsLFL2, LFL2, OsIDEF1, IDEF1, OsABI3,OsRFPH2-24, OsHRZ2, OsRING150, RING150, CLG1, OsCLG1
40282	24840826	Wang L., Zhang H.	Genomewide survey and characterization of metacaspase gene family in rice (Oryza sativa).	J. Genet.	93(1)	93-102	2014	MC5,MC4,MC6,MC2,MC7,MC3,MC8,MC1	OsMC5,OsMC4,OsMC6,OsMC2,OsMC7,OsMC3, OsSTA102,OsMC8,OsMC1
40283	24743650	He Y., Hao Q., Li W., Yan C., Yan N., Yin P.	Identification and characterization of ABA receptors in Oryza sativa.	PLoS ONE	9(4)	e95246	2014	PYL/RCAR3,PP2C9,PYL/RCAR7,PP2C6,PYL/RCAR8,PYL/RCAR7,PYL/RCAR9,PYL/RCAR10,PYL/RCAR11,PYL/RCAR5,PYL/RCAR2,PYL/RCAR4,PYL/RCAR13,PYL/RCAR6	OsPYL/RCAR3, PYL3, OsPYL3, OsPYL10, PYL10, OsRCAR1, RCAR1 ,OsPP15, PP15, OsPP2C09, PP2C09, OsPP2C9, OsPP2C3,OsPYL/RCAR7, PYL7, OsPYL7, OsPYL8, PYL8, OsEnS-90, RCAR1, OsRCAR1,OsPP2C06/OsABI2, OsPP2C06, OsPP2C6, OsABI2, OsPP10, ABI2, OsABIL1, ABIL1,OsPYL/RCAR8, PYL8, OsPYL8, OsPYL9, PYL9, CAPIP1,OsPYL/RCAR7, OsPYL7, PYL7, OsPYL12,OsPYL/RCAR9, PYL9, OsPYL9, OsPYL2, PYL2,OsPYL/RCAR10, PYL10, OsPYL10, OsPYL1, PYL1, R10, OsPYL/R10,OsPYL/RCAR11, OsPYL12, PYL12, OsPYL11, PYL11,OsPYL/RCAR5, PYL5, OsPYL5, OsPYL11, PYL11,OsPYL/RCAR2, PYL2, OsPYL2, OsPYL3, PYL3,OsPYL/RCAR4, PYL4, OsPYL4, OsPYL6, PYL6,OsPYL/RCAR1, PYL1, OsPYL1, OsPYL4, PYL4,OsPYL/RCAR6, PYL6, OsPYL6, OsPYL5, PYL5
40284	24790113	Xu P., Cai W.	RAN1 is involved in plant cold resistance and development in rice (Oryza sativa).	J. Exp. Bot.	65(12)	3277-87	2014	RAN1,_,RAN2	OsRAN1,OsRAN3, RAN3,OsRAN2
40285	24809003	Wang P., Li C., Wang Y., Huang R., Sun C., Xu Z., Zhu J., Gao X., Deng X., Wang P.	Identification of a Geranylgeranyl reductase gene for chlorophyll synthesis in rice.	Springerplus	3	201	2014	LYL1	OsChl P, CHL P, ChlP, OsGGRI, GGRI, OsGGR, GGR, OsGGR1, GGR1, OsGGR1/LYL1/OsChl P
40286	24738983	Meng W., Hsiao A.S., Gao C., Jiang L., Chye M.L.	Subcellular localization of rice acyl-CoA-binding proteins (ACBPs) indicates that OsACBP6::GFP is targeted to the peroxisomes.	New Phytol.	203(2)	469-82	2014	ACBP6,ACBP5,ACBP2,ACBP3,ACBP1,ACBP4	OsACBP6,OsACBP5,OsACBP2,OsACBP3,OsACBP1,OsACBP4
40287	24723395	Shi Y., Liu X., Li R., Gao Y., Xu Z., Zhang B., Zhou Y.	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	J. Exp. Bot.	65(12)	3055-69	2014	DSG1,_,WFP,NMD3	OsDSG1,  OsRING408, RING408,OsRPL10Ac1, OsL10a,OsSPL14, SPL14, IPA1, WFP/IPA1, OsSPL14/WFP/IPA1, OsIPA1,  IPA1/OsSPL14,OsNMD3
40288	24748046	Tanigaki Y., Ito K., Obuchi Y., Kosaka A., Yamato K.T., Okanami M., Lehtonen M.T., Valkonen J.P., Akita M.	Physcomitrella patens has kinase-LRR R gene homologs and interacting proteins.	PLoS ONE	9(4)	e95118	2014		
40289	24687599	Li S., Wang C., Zhou L., Shou H.	Oxygen deficit alleviates phosphate overaccumulation toxicity in OsPHR2 overexpression plants.	J. Plant Res.	127(3)	433-40	2014	PT8,PI1,PT2,PAP10A,SPX1,IPS1,PHR2,PT6	OsPT8, PHT1-8, OsPht1;8, Pht1;8, PHT1;8, OsPHT1;8,OsIPS2, IPS2, OsPI1,OsPT2, PTH1-2, OsPht1;2, PHT1;2, OsPHT1;2,OsPAP10a, PAP10, OsPAP2, PAP2,OsSPX1,OsIPS1,OsPHR2, Os-PHR2,OsPT6, PHT1-6, OsPht1;6, OsLPT6:1, OsLPT1, OsPT6:1, Pht1;6, LPT6:1, LPT1, PT6:1
40290	24728072	Pariasca-Tanaka J., Chin J.H., Dram? KN., Dalid C., Heuer S., Wissuwa M.	A novel allele of the P-starvation tolerance gene OsPSTOL1 from African rice (Oryza glaberrima Steud) and its distribution in the genus Oryza.	Theor. Appl. Genet.	127(6)	1387-98	2014	PSTOL1	Pstol1, OsPSTOL1, OsPSTOL, PSTOL, Pstol1/OsPupK46-2, OsPupK46-2, Pup1, PHO
40291	24723033	Zhang B., Zhao T., Yu W., Kuang B., Yao Y., Liu T., Chen X., Zhang W., Wu A.M.	Functional conservation of the glycosyltransferase gene GT47A in the monocot rice.	J. Plant Res.	127(3)	423-32	2014	_,IRX10	OsGT47A,OsIRX10, OsIRX10L, IRX10L
40292	24777821	Shin H.Y., You M.K., Jeung J.U., Shin J.S.	OsMPK3 is a TEY-type rice MAPK in Group C and phosphorylates OsbHLH65, a transcription factor binding to the E-box element.	Plant Cell Rep.	33(8)	1343-53	2014	_,MAP3,MAPK4	OsbHLH065, OsbHLH65,OsMAPK33, OsMPK14, OsMAPK2, OsMAP3, OsMAPK14, OsMPK3, MAPK33, MPK14, MAPK2, MAPK14, MPK3, OsMAPK3, MAPK3,OsMAPK4, OsMAP2, OsMSRMK3, OsMPK4, OsMPK7, MAP2, MSRMK3, MPK4, MPK7, MAPK7, OsMAPK7
40293	24704865	Nozoye T., Tsunoda K., Nagasaka S., Bashir K., Takahashi M., Kobayashi T., Nakanishi H., Nishizawa N.K.	Rice nicotianamine synthase localizes to particular vesicles for proper function.	Plant Signal Behav	9		2014	NAS2	OsNAS2, OsNAS1
40294	24843077	Wang S., Uddin M.I., Tanaka K., Yin L., Shi Z., Qi Y., Mano J., Matsui K., Shimomura N., Sakaki T., Deng X., Zhang S.	Maintenance of Chloroplast Structure and Function by Overexpression of the Rice MONOGALACTOSYLDIACYLGLYCEROL SYNTHASE Gene Leads to Enhanced salt tolerance in Tobacco.	Plant Physiol.	165(3)	1144-1155	2014	MGD2	OsMGD, MGD, OsMGD2, OsMGDG3, MGDG3
40295	24820023	Gong P., He C.	Uncovering Divergence of Rice Exon Junction Complex Core Heterodimer Gene Duplication Reveals Their Essential Role in Growth, Development, and Reproduction.	Plant Physiol.	165(3)	1047-1061	2014	_,_,_,UDT1,_	OsY14a, Y14a ,mago, OsMAGO2, MAGO2 ,OsMAGO1, MAGO1,Udt1, bHLH164, OsUDT1, OsbHLH164 ,OsY14b, Y14b
40296	24884869	Wei S., Hu W., Deng X., Zhang Y., Liu X., Zhao X., Luo Q., Jin Z., Li Y., Zhou S., Sun T., Wang L., Yang G., He G.	A rice calcium-dependent protein kinase OsCPK9 positively regulates drought stress tolerance and spikelet fertility.	BMC Plant Biol.	14	133	2014	LEA3-1,NAC45,ONAC2,CDPK9,P5CS,BZIP23,TRAB1,NAC6,RAB16B,BZIP72	OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3, OsLEA3A, LEA3A,ONAC045, ONAC45, DLN243, OsDLN243, OsNAM, NAM,SNAC1, snac1, OsNAC9, ONAC002, ONAC2, ONAC033, ONAC33, ONAC043, ONAC43, ONAC044, ONAC44, OsNAC19, NAC19, SNAC1/ONAC002, OsSNAC1, OsNAC9, OsNAC1,OsCDPK9, OsCPK9, CPK9,OsP5CS, P5CS1, OsP5CS1, OsALDH18B1, ALDH18B1, OsP5CS-1, P5CS-1,OsbZIP23, OsAREB1, OsABF2, Osbzip23, OsAREB2, OsZIP23, ZIP23,OsbZIP66, OsABF5, Osbzip66, OsTRAB1, bZIP66, ABF5,OsNAC6, ONAC048, NAC48, SNAC2, SNAC2/OsNAC6, OsNAC6/ONAC048, OsSNAC2, SNAC-2, OsSNAC-2, OsNAC2,rab21, OsLEA28, OsRAB16D, OsRab16d, Rab16d, OsRAB16b, XERO1, OsXERO1, OsRD22, RD22,OsbZIP72, OsAREB2, OsABF4, ABF4, Osbzip72, OsABI5, ABI5
40297	24862452	Guan Q.J., Wang L.F., Bu Q.Y., Wang Z.Y.	The rice gene OsZFP6 functions in multiple stress tolerance responses in yeast and Arabidopsis.	Plant Physiol. Biochem.	82	1-8	2014	_	OsZFP6, ZFP6
40298	24823923	Jiang S., Lu Y., Li K., Lin L., Zheng H., Yan F., Chen J.	Heat shock protein 70 is necessary for Rice stripe virus infection in plants.	Mol. Plant Pathol.			2014	_,_,CTHSP70-1,_,_,_,_	OsHSP70, hsp70,OsHSP70, hsp70,OsctHSP70-1, ctHSP70-1, OsMed37_6, Med37_6, OsHSP70.6, HSP70.6,OsHSP70, hsp70,OsHSP70, hsp70, OsMed37_4, Med37_4 ,OsHSP70, hsp70,OsHSP70, hsp70
40299	24938613	Li L., Li N., Song S.F., Li Y.X., Xia X.J., Fu X.Q., Chen G.H., Deng H.F.	Cloning and characterization of the drought-resistance OsRCI2-5 gene in rice (Oryza sativa L.).	Genet. Mol. Res.	13(2)	4022-35	2014	_	OsRCI2-5
40300	24802508	Rouyi C., Baiya S., Lee S.K., Mahong B., Jeon J.S., Ketudat-Cairns JR., Ketudat-Cairns M.	Recombinant expression and characterization of the cytoplasmic rice beta-glucosidase Os1bglu4.	PLoS ONE	9(5)	e96712	2014	BH1	BGLU4, Os1bglu4, Os1Bglu4, Os1BGlu4, OsBH1
40301	24834920	Wang C., Li S., Ng S., Zhang B., Zhou Y., Whelan J., Wu P., Shou H.	Mutation in xyloglucan 6-xylosytransferase results in abnormal root hair development in Oryza sativa.	J. Exp. Bot.	65(15)	4149-57	2014	_,_,_,_,_,_,_	OsXXT1, SRH2,OsGT5,OsGT6,OsGT2,OsGT3,OsGT4,OsGT7
40302	24971328	Wang W., Xu M., Wang Y., Jamil M.	Basal transcription factor 3 plays an important role in seed germination and seedling growth of rice.	Biomed Res Int	2014	465739	2014	_,10GBTF3,_	Osj3g1BTF3, BTF3a, Os03g1BTF3,Osj10gBTF3, 10gBTF3, Os10gBTF3, BTF3a, OsBTF3a,Osj3g2BTF3, BTF3b, Os03g2BTF3
40303	24865494	Wang B., Yu J., Zhu D., Chang Y., Zhao Q.	Maize ZmRACK1 is involved in the plant response to fungal phytopathogens.	Int J Mol Sci	15(6)	9343-59	2014		
40304	24865690	Zhang D., Chen L., Li D., Lv B., Chen Y., Chen J., XuejiaoYan, Liang J.	OsRACK1 is involved in abscisic acid- and H2O2-mediated signaling to regulate seed germination in rice (Oryza sativa, L.).	PLoS ONE	9(5)	e97120	2014	RACK1,RBOHA,RBOHC,AMY1A,AMY3D,RBOHH,RACK1B	RACK1A, RWD, OsWD40-21, OsRACK1, OsRACK1A,rbohA, OsrbohA, Os rbohA, OsRbohA, OsNox2, Nox2, OsRboh2, Rboh2,rbohC, OsrbohC, Os rbohC, OsRbohC, OsNox5, Nox5, OsrbohD, OsRboh5, RBOHA, OsRboh5, Rboh5,Amy1A/C*(RAmy1A/C), alpha Amy7, AMY1.1, Amy1A, RAmy1A/C, Amy1A/C*, Amy1, Amy1A_C, OsAmy1A, alphaAmy7-C, RAmy1A, AmyI-1, OsAmyI-1, OsRamy1A,Amy3D/E*(RAmy3D/E), alpha Amy3, AmyII-4, AMY1.3, Amy3D, Amy3D/E*, RAmy3D/E, Amy3D_E, Amy8, aAmy3, RAmy3D, OsAmy3D, alphaAmy3, OsRamy3D,rbohH, OsrbohH, Os rbohH, OsNox9, Nox9, OsRboh9, Rboh9, Os-RbohH, RbohH ,OsWD40-122, WD40-122, OsRACK1B
40305	24805883	Chou W.L., Huang L.F., Fang J.C., Yeh C.H., Hong C.Y., Wu S.J., Lu C.A.	Divergence of the expression and subcellular localization of CCR4-associated factor 1 (CAF1) deadenylase proteins in Oryza sativa.	Plant Mol. Biol.	85(4-5)	443-58	2014	CAF1-18,CAF1-21,CAF1-14,CAF1-2,CAF1-6,CAF1-8,CAF1-10,CAF1-16,CAF1-20,CAF1-19,CAF1-9,CAF1-17,CAF1-7,CAF1-15,CAF1-13,CAF1-5,CAF1-12,CAF1-1	OsCAF1-18, OsCAF1O, CAF1O,OsCAF1-21, OsCAF1N, CAF1N,OsCAF1-14, OsCAF1F, CAF1F,OsCAF1-2, OsCAF1Q, CAF1Q,OsCAF1-6, OsCAF1D, CAF1D,OsCAF1-8, OsCAF1K, CAF1K,OsCAF1-10, OsCAF1C, CAF1C,OsCAF1-16, OsCAF1E, CAF1E,OsCAF1-20, OsCAF1R, CAF1R,OsCAF1-19, OsCAF1P, CAF1P,OsCAF1-9, OsCAF1J, CAF1J,OsCAF1-17, OsCAF1M, CAF1M,OsCAF1-7, OsCAF1L, CAF1L,OsCAF1-15, OsCAF1I, CAF1I,OsCAF1G, CAF1G, OsCAF1-13,OsCAF1B, CAF1B, OsCAF1-5,OsCAF1A, CAF1A, OsCAF1-12,OsCAF1H, CAF1H, OsCAF1-1
40306	24915093	Do H., Kim I.S., Kim Y.S., Shin S.Y., Kim J.J., Mok J.E., Park S.I., Wi A.R., Park H., Kim H.W., Yoon H.S., Lee J.H.	Crystallization and preliminary X-ray crystallographic studies of dehydroascorbate reductase (DHAR) from Oryza sativa L. japonica.	Acta Crystallogr F Struct Biol Commun	70(Pt 6)	781-5	2014	DHAR1	OsDHAR1, DHAR, cytDHAR, OscytDHAR, OsDHAR
40307	24788752	Guevara D.R., El-Kereamy A., Yaish M.W., Mei-Bi Y., Rothstein S.J.	Functional characterization of the rice UDP-glucose 4-epimerase 1, OsUGE1: a potential role in cell wall carbohydrate partitioning during limiting nitrogen conditions.	PLoS ONE	9(5)	e96158	2014	BC6,BC7,CESA7,UGE1,RSUS1	Bc6*, Bc6, OsCesA9, CESA9, OsCESA9, OS_CESA09, OsCesA 9, CesA9, BC88, SDBC1, OsSDBC1,OsCesA4, OsCESA4, CESA4, OS_CESA04, BC11, bc7t, Bc7(t), bc-7, OsCesA 4, CesA4, FC17/CESA4, FC17, OsFC17,OsCesA7, OsCESA7, OS_CESA07, OsCesA 7, CesA7,OsUGE1, OsUGE-1, UGE-1,sus1, RSus1(t), SUS1, SS2, OsScS2, RSs2, RSus1, SuSy1, OsSUS1, RSS2, RSus2, OsRSUS1
40308	24812252	Liu D., Sun W., Yuan Y., Zhang N., Hayward A., Liu Y., Wang Y.	Phylogenetic analyses provide the first insights into the evolution of OVATE family proteins in land plants.	Ann. Bot.	113(7)	1219-33	2014	_,_,_,_,_,_,OFP1,_,_,_,OFP4,_,OFP3,OFP21,ESD1,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,OFP14,OFP2	OsOFP10, OsOFP14, OFP10, OFP14,OsOFP6, OsOFP09,OsOFP20, OsOFP31,OsOFP23, OsOFP20,OsOFP13, OsOFP19, OFP13, OFP19,OsOFP22, OsOFP05,OsOFP1, OsOFP01,OsOFP8, OsOFP12,OsOFP28, OsOFP25,OsOFP17, OsOFP27,OsOFP4, OsOFP06, OsOFP6, OFP6,OsOFP5, OsOFP07,OsOFP3, OsOFP04, OFP4,OsOFP21, OsOFP10,OsOFP31, OsOFP26, OFP31, OFP26, OsSTA245, Os ESD1,OsOFP18, OsOFP28,OsOFP25, OsOFP23,OsOFP9, OsOFP13,OsOFP33,OsOFP7, OsOFP11,OsOFP19, OsOFP30,OsOFP32,OsOFP27, OsOFP02,OsOFP11, OsOFP16,OsOFP29, OsOFP18,OsOFP16, OsOFP24,OsOFP15, OsOFP22,OsOFP12, OsOFP17,OsOFP30, OsOFP08, OsOFP8, OFP8, OFP30,OsOFP26, OsOFP29,OsOFP24, OsOFP15,OsOFP14, OsOFP21,OsOFP2, OsOFP03
40309	24847337	Tang D., Miao C., Li Y., Wang H., Liu X., Yu H., Cheng Z.	OsRAD51C is essential for double-strand break repair in rice meiosis.	Front Plant Sci	5	167	2014	PAIR2,RAD21-4,CRC1,PAIR3,RAD51C,ZEP1	Pair2, OsPAIR2, OsASY1,OsRad21-4, REC8, OsREC8, OsRAD21-4,OsCRC1,,OsRAD51C, OsRad51C, RAD51C-1, RAD51C-2, RAD51C-3,OsZEP1
40310	24817585	Yadav R., Prasad R.	Identification and functional characterization of sorbitol-6-phosphate dehydrogenase protein from rice and structural elucidation by in silico approach.	Planta	240(1)	223-38	2014	M6PR	OsM6PR1, M6PR1, OsM6PR2, M6PR2, OsM6PR, OsS6PDH, S6PDH, OsAKR4-4, AKR4-4
40311	24840804	Byun M.Y., Kim W.T.	Suppression of OsRAD51D results in defects in reproductive development in rice (Oryza sativa L.).	Plant J.	79(2)	256-69	2014	_,_,RAD51D,_,_	OsRAD51B, OsRad51B,OsXRCC3,OsRAD51D, OsRad51D, OsRAD51D.1, OsRAD51D.2, OsRAD51D.3,OsXRCC2,OsRAD51C, OsRad51C
40312	24905845	Xie Y., Mao Y., Xu S., Zhou H., Duan X., Cui W., Zhang J., Xu G.	heme-heme oxygenase 1 system is involved in ammonium tolerance by regulating antioxidant defence in Oryza sativa.	Plant Cell Environ.			2014	SE5	Se5, OsHO1, OsHO-1, OsHY1, HO-1, HO1, OsSE5, YGL2, YGL2/HO1
40313	24616269	Zhao J., Wang T., Wang M., Liu Y., Yuan S., Gao Y., Yin L., Sun W., Peng L., Zhang W., Wan J., Li X.	DWARF3 participates in an SCF complex and associates with DWARF14 to suppress rice shoot branching.	Plant Cell Physiol.	55(6)	1096-109	2014	D14,_,D3,_,_,_,_,_,_,CUL1,_,_,OSK20,OSK1	d14(d10), dwf13, d10, d14, D88, HTD2, OsHTD2, OsD14, qPPB3, D88/D14, HTD4,OSK5,d3, dwf3, D3/OsMAX2, Os_F0760, SOL1, OsORE9, ORE9, MAX2, OsRFPH2-10, RFPH2-10, OsD3,  OsFBL27, FBL27,OSK2,OSK3,OSK19,OSK28,OSK10,OSK15,OsCUL1, UCIP8, OsUCIP8,OSK21,OSK6,SKP20, OsSKP20,SKP1, OsSKP1
40314	24906444	Yang C., Li D., Liu X., Ji C., Hao L., Zhao X., Li X., Chen C., Cheng Z., Zhu L.	OsMYB103L, an R2R3-MYB transcription factor, influences leaf rolling and mechanical strength in rice (Oryza sativa L.).	BMC Plant Biol.	14	158	2014	CESA5,BC6,CESA7,CESA10,CESA1,CESA3,CESA11,CEF1,CESA6,CESA8,CESA2,BC7	OsCesA5, OsCESA5, OS_CESA05,Bc6*, Bc6, OsCesA9, CESA9, OsCESA9, OS_CESA09, OsCesA 9, CesA9, BC88, SDBC1, OsSDBC1,OsCesA7, OsCESA7, OS_CESA07, OsCesA 7, CesA7,OsCesA10, OsCESA10,OsCesA1, OsCesA-1, OsCESA1, OS_CESA01, CesA1,OsCesA3, OsCESA3, OS_CESA03,OsCesA11, OsCESA11, OsCLD1, CLD1,OsMYB103, OsMYB103L, CEF1/OsMYB103L, MYB103, MYB103L, OsMYB93, MYB93, OsFC9, FC9, Os2R_MYB74, 2R_MYB74,OsCesA6, OsCESA6, OS_CESA06,OsCesA8, OsCESA8, OS_CESA08, CesA8,OsCesA2, OsCESA2, OS_CESA02,OsCesA4, OsCESA4, CESA4, OS_CESA04, BC11, bc7t, Bc7(t), bc-7, OsCesA 4, CesA4, FC17/CESA4, FC17, OsFC17
40315	24935343	Choudhury B.I., Khan M.L., Dayanandan S.	Patterns of nucleotide diversity and phenotypes of two domestication related genes (OsC1 and Wx) in indigenous rice varieties in Northeast India.	BMC Genet.	15	71	2014	WX1,C	wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx,C, Cp, OsC1, Os-C1, C1, OsMyb6, Myb6, OsPL6, PL6, OsGL1E, GL1E, Os2R_MYB63, 2R_MYB63, OsC1PLSr, C1PLSr
40316	25219300	Fan X., Xie D., Chen J., Lu H., Xu Y., Ma C., Xu G.	Over-expression of OsPTR6 in rice increased plant growth at different nitrogen supplies but decreased nitrogen use efficiency at high ammonium supply.	Plant Sci.	227	1-11	2014	AMT1;3,AMT1;1,AMT1;2,PTR6,NRT1,NRT2.2,NRT2.1	OsAMT1;3, AMT1-3, Osamt1-2, "OsAMT1,2", OsAMT1;2, OsAMT1.3, AMT1.2,OsAMT1;1, OsAMT1:1, OsAMT1, AMT1-1, AMT1, OsAMT1p, OsAMT1-1, Osamt1-1, "OsAMT1,1", OsAMT1.1, AMT1.1, FCO12,OsAMT1;2, AMT1-2, Osamt1-3, "OsAMT1,3", OsAMT1;3, OsAMT1.3, OsAMT1.2, AMT1.2,OsPTR6, OsNRT1;2, NRT1;2, OsNPF7.3, NPF7.3 ,OsNRT1, OsNRT1;1, OsNRT1.1, OsNRT1.1a, OsNRT1.1b, NRT1.1, NRT1.1a, NRT1.1b, OsNPF8.9, NPF8.9 , OsNRT1.1B,OsNRT2.2, OsNRT2.1,OsNRT2.1, OsNRT2.2
40317	24892523	Chujo T., Miyamoto K., Ogawa S., Masuda Y., Shimizu T., Kishi-Kaboshi M., Takahashi A., Nishizawa Y., Minami E., Nojiri H., Yamane H., Okada K.	Overexpression of phosphomimic mutated OsWRKY53 leads to enhanced blast resistance in rice.	PLoS ONE	9(6)	e98737	2014	MPK6,SMG1,WRKY53,MSRMK2	OsMPK6, OsDR6, DR6, OsMPK4, MPK4, OsMAPK4, MAPK4,OsMKK4, MKK4, OsMKK4/SMG1, OsMAPKK4, MAPKK4, OsMEK4, MEK4, OsSMG1, SMG1/OsMEK6, OsMEK6, MEK6, OsSTS, STS,OsWRKY53, WRKY-53,OsMSRMK2, OsMAPK5, OsMAP1, OsMPK3, OsBIMK1, OsMAPK2, MPK5, BIMK1, MAPK2, MAPK5, MPK3, OsMPK5, OsMAPK3, OsMAPK5b, MAPK3
40318	24970010	Kanwar P., Sanyal S.K., Tokas I., Yadav A.K., Pandey A., Kapoor S., Pandey G.K.	Comprehensive structural, interaction and expression analysis of CBL and CIPK complement during abiotic stresses and development in rice.	Cell Calcium	56(2)	81-95	2014	CIPK02,CIPK23,CIPK03,CIPK09,CIPK08,CIPK30,CIPK33,CK1,PK4,CIPK20,CIPK05,CBL1,CBL10,CIPK26,SOS3,CIPK32,CIPK27,CIPK21,CIPK25,CIPK28,CBL2,CIPK04,PK7,CIPK17,CBL9,CBL3,CIPK07,CBL7,CIPK13,CIPK18,CIPK22,CIPK06,CBL5,CIPK14,CIPK01,SOS2,CIPK16,CIPK29,CBL8,CIPK15,CBL6,CIPK10,CIPK11	OsCIPK02, CIPK2, OsCIPK2, OsSnRK3.26, SnRK3.26,OsCIPK23, Os-CIPK23, OsSnRK3.23, SnRK3.23,OsCIPK03, CIPK3, OsCIPK3, OsSnRK3.27, SnRK3.27,OsCIPK09, CIPK9, OsCIPK9, OsSnRK3.10, SnRK3.10,OsCIPK08, CIPK8, OsCIPK8, OsSnRK3.4, SnRK3.4,OsCIPK30, OsSnRK3.5, SnRK3.5,OsCIPK33, OsSnRK3.32, SnRK3.32,OsCK1, CIPK31, OsCIPK31, Os-CIPK3, OsSnRK3.11, SnRK3.11,OsCIPK19, OsPK4, OsPK04, Os-CIPK19, CIPK19, OsSnRK3.20, SnRK3.20,OsCIPK20, OsSnRK3.15, SnRK3.15,OsCIPK05, CIPK5, OsCIPK5, OsSTA7, OsSnRK3.2, SnRK3.2,OsCBL1, Os-CBL1,OsCBL10,OsCIPK26, OsSnRK3.8, SnRK3.8,CBL4, OsCBL4, OsSOS3,OsCIPK32, OsSnRK3.34, SnRK3.34,OsCIPK27, OsSnRK3.30, SnRK3.30,OsCIPK21, OsSnRK3.24, SnRK3.24,OsCIPK25, OsSnRK3.21, SnRK3.21,OsCIPK28, OsSnRK3.18, SnRK3.18,OsCBL2,OsCIPK04, CIPK4, OsCIPK4, OsSnRK3.35, SnRK3.35,OsPK7, OsPK07, OsCIPK12, CIPK12, OsSnRK3.6, SnRK3.6,OsCIPK17, OsSnRK3.14, SnRK3.14,OsCBL9,OsCBL3,OsCIPK07, CIPK7, OsCIPK7, OsSnRK3.13, SnRK3.13,OsCBL7,OsCIPK13, OsSnRK3.1, SnRK3.1,OsCIPK18, OsSnRK3.16, SnRK3.16,OsCIPK22, OsSnRK3.17, SnRK3.17,OsCIPK06, CIPK6, OsCIPK6, OsSnRK3.28, SnRK3.28,OsCBL5,OsCIPK14, OsSnRK3.33, SnRK3.33,OsCIPK01, CIPK1, OsCIPK1, OsSnRK3.3, SnRK3.3,CIPK24, OsCIPK24, OsSOS2, OsSnRK3.22, SnRK3.22,OsCIPK16, OsSnRK3.29, SnRK3.29,OsCIPK29, OsSnRK3.25, SnRK3.25,OsCBL8,OsCIPK15, OsSnRK3.31, SnRK3.31,OsCBL6,OsCIPK10, OsSnRK3.12, SnRK3.12,OsCIPK11, OsMSURPK2, MSURPK2, OsSnRK3.7, SnRK3.7
40319	24932524	Deng X.J., Zhang H.Q., Wang Y., He F., Liu J.L., Xiao X., Shu Z.F., Li W., Wang G.H., Wang G.L.	Mapped clone and functional analysis of leaf-color gene ygl7 in a rice hybrid (Oryza sativa L. ssp. indica).	PLoS ONE	9(6)	e99564	2014	YGL98,PSAA,CHLH,YGL1,FGL,CAB2R,PSBA,ELL,CAB1R	OsChlD, ChlD, CHLD, OsCHLD, Ygl7, YGL3, OsvWA12, vWA12,PsaA, psaA, PsAA1, psaA1,OsChlH, ChlH, OsCHLH,OsYGL1, CHLG, Ygl1, CS, OsCHLG,fgl(fl), fl, fgl, OsFGL, OsPorB, PoPA, PORA, porA, OsPORA, PORB, OsPORB,Oscab2R, CAB-2, OsLhcp, Lhcb1, Lhcb1a, OsLhcb1, OsLhcb1a ,PsbA, psbA, OsPsbA, PSBD1, OsPSBD1, psbD1,chlI, OsChlI, ChlI, CHLI, OsCHLI, OsCHLI/ELL, OsELL,cab1R, LHCP, CAB, OsLhcb1, Lhcb1, Cab1, OsCAB1, Lhcb1b, OsLhcb1b, CAB2R
40320	24912543	Wen F., Qin T., Wang Y., Dong W., Zhang A., Tan M., Jiang M.	OsHK3 is a crucial regulator of abscisic acid signaling involved in antioxidant defense in rice.	J Integr Plant Biol			2014	DSG1,DMI3,RBOHE,RBOHB,HK3	OsMAPK6, MAPK6, OsMPK6, OsSIPK, SIPK, OsMAPK1, MAPK1, MPK1, OsMPK1, MPK6, OsDSG1,OsDMI3, OsCCaMK1, OsCCaMK, OsCCAMK, CCAMK,rbohE, OsrbohE, Os rbohE, OsRbohE, OsNox3, Nox3, OsRboh3, Rboh3,rbohB, OsrbohB, Os rbohB, OsRbohB, OsNox1, Nox1, Os-RbohB, RbohB, OsRboh1, Rboh1,OHK2, HK, OsHK3, Ohk, Crl2, Ohk2, OsHK3b, OsHK03
40321	25014258	Endo A., Nelson K.M., Thoms K., Abrams S.R., Nambara E., Sato Y.	Functional characterization of xanthoxin dehydrogenase in rice.	J. Plant Physiol.	171(14)	1231-40	2014	ABA2	OsABA2, OsSDR, SDR
40322	24901798	Che L., Wang K., Tang D., Liu Q., Chen X., Li Y., Hu Q., Shen Y., Yu H., Gu M., Cheng Z.	OsHUS1 facilitates accurate meiotic recombination in rice.	PLoS Genet.	10(6)	e1004405	2014	_,ZEP1,RMC1,PAIR1,RAD51C,COM1,HEI10	OsHUS1, HUS1 ,OsZEP1,MER3, mer3, OsMER3, RCK, OsRCK, Os-MER3,Pair1, OsPAIR1,OsRAD51C, OsRad51C, RAD51C-1, RAD51C-2, RAD51C-3,OsCOM1,HEI10A, HEI10B, OsHEI10,  OsRING434, RING434
40323	24901230	Takahashi R., Ishimaru Y., Shimo H., Bashir K., Senoura T., Sugimoto K., Ono K., Suzui N., Kawachi N., Ishii S., Yin Y.G., Fujimaki S., Yano M., Nishizawa N.K., Nakanishi H.	From laboratory to field: OsNRAMP5-knockdown rice is a promising candidate for Cd phytoremediation in paddy fields.	PLoS ONE	9(6)	e98816	2014	IRT1,NRAMP1,IRT2,LCD1	OsIRT1, ZIP10, OsZIP10, OsZIP12, ZIP12,OsNramp1, OsNRAMP1, OsNramp6,OsIRT2, OsIRT1, OsZIP15, ZIP15,NRAMP5, OsNRAMP5, OsNramp5, OsLCD1
40324	25288999	Yoo S.J., Kim S.H., Kim M.J., Ryu C.M., Kim Y.C., Cho B.H., Yang K.Y.	Involvement of the OsMKK4-OsMPK1 Cascade and its Downstream Transcription Factor OsWRKY53 in the Wounding Response in Rice.	Plant Pathol. J.	30(2)	168-77	2014	DSG1,WRKY53,SMG1	OsMAPK6, MAPK6, OsMPK6, OsSIPK, SIPK, OsMAPK1, MAPK1, MPK1, OsMPK1, MPK6, OsDSG1,OsWRKY53, WRKY-53,OsMKK4, MKK4, OsMKK4/SMG1, OsMAPKK4, MAPKK4, OsMEK4, MEK4, OsSMG1, SMG1/OsMEK6, OsMEK6, MEK6, OsSTS, STS
40325	24926784	Meng W., Chye M.L.	Rice acyl-CoA-binding proteins OsACBP4 and OsACBP5 are differentially localized in the endoplasmic reticulum of transgenic Arabidopsis.	Plant Signal Behav	9		2014	ACBP5,ACBP4	OsACBP5,OsACBP4
40326	24958714	Matsui H., Fujiwara M., Hamada S., Shimamoto K., Nomura Y., Nakagami H., Takahashi A., Hirochika H.	Plasma membrane localization is essential for Oryza sativa Pto-interacting protein 1a-mediated negative regulation of immune signaling in rice.	Plant Physiol.	166(1)	327-36	2014	RLCK178	OsPti1a, Pti1a, OsRLCK178
40327	25089296	Huang X., Duan M., Liao J., Yuan X., Chen H., Feng J., Huang J., Zhang H.S.	OsSLI1, a homeodomain containing transcription activator, involves abscisic acid related stress response in rice (Oryza sativa L.).	ScientificWorldJournal	2014	809353	2014	HOX24,BZIP46	Oshox24, OsHox24, OsSLI1, OsHDZ6, OsHDZIP6, HDZ6, HDZIP6,ABL1, bZIP46, OsABL1, OsbZIP46, OsAREB8, OsABF2, ABF2, OsABF3, ABF3, OsbZIP46CA1, OsZIP46, ZIP46, OsbZIP46/OsABF2
40328	24940877	Roy D., Paul A., Roy A., Ghosh R., Ganguly P., Chaudhuri S.	Differential acetylation of histone H3 at the regulatory region of OsDREB1b promoter facilitates chromatin remodelling and transcription activation during cold stress.	PLoS ONE	9(6)	e100343	2014	DREB1B	OsDREB1B, ERF31, OsERF031, OsERF#031, OsERF31, AP2/EREBP#169, AP2/EREBP169, OsDREB1b, OsDREB1C, OsCBF1, CBF1
40329	25017161	Tyagi H., Jha S., Sharma M., Giri J., Tyagi A.K.	Rice SAPs are responsive to multiple biotic stresses and overexpression of OsSAP1, an A20/AN1 zinc-finger protein, enhances the basal resistance against pathogen infection in tobacco.	Plant Sci.	225	68-76	2014	SAP2,SAP15,SAP16,SAP5,SAP18,SAP13,SAP8,ZFP177,SAP7,SAP3,SAP14,SAP10,SAP12,SAP17,SAP11,SAP6,SAP4,SAP1	OsSAP2,OsSAP15,OsSAP16, ZOS7-05, OsZOS7-05,OsSAP5,OsSAP18,OsSAP13,Osi-SAP8, OsiSAP8, OsSAP8, OsSAP1, SAP1,OsSAP9, SAP9, ZFP33,OsSAP7, OsiSAP7,OsSAP3,OsSAP14,OsSAP10,OsSAP12,OsSAP17,OsDOG, OsSAP11, DOG,OsSAP6,OsSAP4,Osi-SAP1, ISAP1, OsiSAP1, OSISAP1, OsSAP1
40330	24813725	Yang W.T., Baek D., Yun D.J., Hwang W.H., Park D.S., Nam M.H., Chung E.S., Chung Y.S., Yi Y.B., Kim D.H.	Overexpression of OsMYB4P, an R2R3-type MYB transcriptional activator, increases phosphate acquisition in rice.	Plant Physiol. Biochem.	80	259-67	2014	PT4,MYB4P,PT8,PT7,PT2,PT1	OsPT4, PHT1-4, OsPht1;4, PHT1-2, PHT1;4, OsPHT1;4,OsMYB4P, Os2R_MYB90, 2R_MYB90,OsPT8, PHT1-8, OsPht1;8, Pht1;8, PHT1;8, OsPHT1;8,OsPT7, PHT1-7, OsPht1;7,OsPT2, PTH1-2, OsPht1;2, PHT1;2, OsPHT1;2,OsPT1, PHT1-1, OsPht1;1, Pht1;1, OsPHT1;1, PHT1;1
40331	25071223	Zhang H., Liu Y., Wen F., Yao D., Wang L., Guo J., Ni L., Zhang A., Tan M., Jiang M.	A novel rice C2H2-type zinc finger protein, ZFP36, is a key player involved in abscisic acid-induced antioxidant defence and oxidative stress tolerance in rice.	J. Exp. Bot.	65(20)	5795-809	2014	DSG1,APX2,MSRMK2,RBOHE,RBOHB,MPK7,_,SODCC1,MAPK4,BSRD1	OsMAPK6, MAPK6, OsMPK6, OsSIPK, SIPK, OsMAPK1, MAPK1, MPK1, OsMPK1, MPK6, OsDSG1,OsAPX2, OsAPx02, APXb, OsAPx2, OSAPX2, APx2, cAPX, OsAPX1, APX1,OsMSRMK2, OsMAPK5, OsMAP1, OsMPK3, OsBIMK1, OsMAPK2, MPK5, BIMK1, MAPK2, MAPK5, MPK3, OsMPK5, OsMAPK3, OsMAPK5b, MAPK3,rbohE, OsrbohE, Os rbohE, OsRbohE, OsNox3, Nox3, OsRboh3, Rboh3,rbohB, OsrbohB, Os rbohB, OsRbohB, OsNox1, Nox1, Os-RbohB, RbohB, OsRboh1, Rboh1,OsMPK7, OsMAPK44, MAPK44, OsMAPK20-5, MAPK20-5,OsMPK14, MPK14,sodCc1, SODCC.1, sodA, RSODA, OsSOD1, OsCSD2, OsSodA, SodCc2, OsSODA1, SODCc1-Cu/Zn, OsCu/Zn-SOD2, Cu/Zn-SOD2, OsCSD1.2, CSD1.2, OsSODCc1-Cu/Zn, SODCc1-Cu/Zn, CuZnSOD1, Cu/ZnSOD1, OsCu/ZnSOD1, OsCSD4, CDS4, CuZnSOD4, OsCuZnSOD1, OsCSD1, CSD1, OsSOD2,OsMAPK4, OsMAP2, OsMSRMK3, OsMPK4, OsMPK7, MAP2, MSRMK3, MPK4, MPK7, MAPK7, OsMAPK7,ZFP36, OsZFP36, OsBSRD1, Bsr-d1, BSR-D1, DLN91, OsDLN91
40332	25037719	Li Q., Zhu F.Y., Gao X., Sun Y., Li S., Tao Y., Lo C., Liu H.	Young leaf chlorosis 2 encodes the stroma-localized heme oxygenase 2 which is required for normal tetrapyrrole biosynthesis in rice.	Planta	240(4)	701-12	2014	YLC2	OsHO2, HO2, OsHO-2, HO-2
40333	25036785	Cai Y., Chen X., Xie K., Xing Q., Wu Y., Li J., Du C., Sun Z., Guo Z.	Dlf1, a WRKY transcription factor, is involved in the control of flowering time and plant height in rice.	PLoS ONE	9(7)	e102529	2014	EHD2/RID1,EF1,HD3A,SE1,WRKY11	Ehd2, RID1, OsID1, ID1, OsId1, OsID, Ehd2/RID1/OsId1, RID1/OsID1/Ehd2,Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, OsHd1,  Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,OsWRKY11, Dlf1, OsWRKY11.1, OsWRKY11.2
40334	25001222	Wang Y., Xu M.Y., Liu J.P., Wang M.G., Yin H.Q., Tu J.M.	Molecular identification and interaction assay of the gene (OsUbc13) encoding a ubiquitin-conjugating enzyme in rice.	J Zhejiang Univ Sci B	15(7)	624-37	2014	UBC13,CROC1,VDAC1,LHS1,MT2B	OsUbc13, Ubc13, OsUBC47, UBC47,OsCROC-1, CROC-1, OsCROC1, OsUEV1B, UEV1B,OSVDAC1, osvdac1, OsVDAC1,OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO, OsLHS1, OsLG3b, LG3b, qLGY3, LGY3, DLN80, OsDLN80, OLR, OsOLR, GW3p6, OsGW3p6, OsMADS1GW3p6, MADS1GW3p6, qLGY3/OsLG3b/GW3p6,OsMT2b, MT2b, OsMT-I-2c, MT-I-2c, MT2C, MT2BL, OsMT2C, OsMT2BL, MTE, OsMT2b1, OsMT2b2, MT2b1, MT2b2, MTb, met1, OsMTe, OsMT-I-2c, OsB22EL8, MTe, MT-I-2c, B22EL8
40335	24995795	Zhang S., Wang S., Xu Y., Yu C., Shen C., Qian Q., Geisler M., Jiang D.A., Qi Y.	The auxin response factor, OsARF19, controls rice leaf angles through positively regulating OsGH3-5 and OsBRI1.	Plant Cell Environ.			2014	D61,ARF7A,JAR1	d61*, dwf42, d61, OsBRI1, OSBRI1, BRI1, Os BRI1, Osbri1, OsBRKq1, BRKq1,OsARF7a, OsARF19, ARF19, OsARF7,OsJAR1, OsGH3.5, GH3.5, OsGH3-5, GH3-5
40336	25081037	Han M., Kim C.Y., Lee J., Lee S.K., Jeon J.S.	OsWRKY42 represses OsMT1d and induces reactive oxygen species and leaf senescence in rice.	Mol. Cells	37(7)	532-9	2014	MT1G,MT1F,MTI4C,WRKY42	OsMT1g, MT1g, MT1Le, OsMT1Le ,OsMT1f, OsMT1c, MT1f, MT1c, MT1Lb, OsMT1Lb ,MT-1-4b, OsMT1d, MT1d, OsMT-I-4c, MT1c, OsMT1c,OsWRKY42, WRKY-42
40337	24980160	Li J., Xu R.F., Qin R.Y., Ma H., Li H., Zhang Y.P., Li L., Wei P.C., Yang J.B.	Isolation and functional characterization of a novel rice constitutive promoter.	Plant Cell Rep.	33(10)	1651-60	2014	DHAR1	OsDHAR1, DHAR, cytDHAR, OscytDHAR, OsDHAR
40338	25052102	Liu D., Wang W., Cai X.	Modulation of amylose content by structure-based modification of OsGBSS1 activity in rice (Oryza sativa L.).	Plant Biotechnol. J.			2014	WX1	wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx
40339	25089878	He D., Zhang H., Yang P.	The mitochondrion-located protein OsB12D1 enhances flooding tolerance during seed germination and early seedling growth in rice.	Int J Mol Sci	15(8)	13461-81	2014	_,_,_,_,B12D1,_	,,,,OsB12D1,OsEnS-48
40340	25079308	Peng Y., Gao Z., Zhang B., Liu C., Xu J., Ruan B., Hu J., Dong G., Guo L., Liang G., Qian Q.	Fine mapping and candidate gene analysis of a major QTL for panicle structure in rice.	Plant Cell Rep.	33(11)	1843-50	2014	D14,WFP,APO1,DST,GN1A	d14(d10), dwf13, d10, d14, D88, HTD2, OsHTD2, OsD14, qPPB3, D88/D14, HTD4,OsSPL14, SPL14, IPA1, WFP/IPA1, OsSPL14/WFP/IPA1, OsIPA1,  IPA1/OsSPL14,apo1(t), apo1, SCM2, SCM2/APO1, OsFbox321, Os_F0393, Pbl6/APO1, Pbl6, OsPbl6,  OsFBX202, FBX202,OsDST, DLN102, OsDLN102, HST1, OsHST1,Gn1a, OsCKX2, CKX2, ckx2, Gn1a/OsCKX2, Os CKX2, CKX2/Gn1a
40341	24985152	Ranjan A., Dickopf S., Ullrich K.K., Rensing S.A., Hoecker U.	Functional analysis of COP1 and SPA orthologs from Physcomitrella and rice during photomorphogenesis of transgenic Arabidopsis reveals distinct evolutionary conservation.	BMC Plant Biol.	14	178	2014	PPS,WD40-24,_,_	OsWD40-55, OsCOP1, COP1, YEL, OsYEL, OsPPS, COP1-1, OsCOP1-1,  OsRING347, RING347,OsWD40-24, OsSPA3/4,  OsDWD75, DWD75,OsWD40-123, OsSPA1,  OsDWD76, DWD76,OsWD40-34, OsRUP,  OsDWD72, DWD72
40342	24989161	Shih M.C., Chou M.L., Yue J.J., Hsu C.T., Chang W.J., Ko S.S., Liao D.C., Huang Y.T., Chen J.J., Yuan J.L., Gu X.P., Lin C.S.	BeMADS1 is a key to delivery MADSs into nucleus in reproductive tissues-De novo characterization of Bambusa edulis transcriptome and study of MADS genes in bamboo floral development.	BMC Plant Biol.	14	179	2014		
40343	25002225	Hsu K.H., Liu C.C., Wu S.J., Kuo Y.Y., Lu C.A., Wu C.R., Lian P.J., Hong C.Y., Ke Y.T., Huang J.H., Yeh C.H.	Expression of a gene encoding a rice RING zinc-finger protein, osrzfp34, enhances stomata opening.	Plant Mol. Biol.	86(1-2)	125-37	2014	RFP1	OsRZFP34, OsRFP1, RZFP34, UCIP18, OsUCIP18,  OsRING160, RING160
40344	24923192	Yoon J., Cho L.H., Kim S.L., Choi H., Koh H.J., An G.	The BEL1-type homeobox gene SH5 induces Seed shattering by enhancing abscission-zone development and inhibiting lignin biosynthesis.	Plant J.	79(5)	717-28	2014	SHAT1,SH5,SH4	OsSHAT1, AP2/EREBP#043, AP2/EREBP43, AP2-5, DLN124, OsDLN124, ObSHAT1, OgSHAT1, OrSHAT1 ,OsSH5, RI, SH5/RI, OsRI, VPB1, OsVPB1,sh4, SH4, SHAT2, SHA1, qSH4, QSH4, OsSh4, Sh4, Osh4, OsMSL23, MSL23
40345	24947012	Takahashi S., Teranishi M., Izumi M., Takahashi M., Takahashi F., Hidema J.	Transport of rice cyclobutane pyrimidine dimer photolyase into mitochondria relies on a targeting sequence located in its C-terminal internal region.	Plant J.	79(6)	951-63	2014	CPD	qUVR-10, OsPHR, PHR, OsCPD
40346	25157897	Miyamoto K., Matsumoto T., Okada A., Komiyama K., Chujo T., Yoshikawa H., Nojiri H., Yamane H., Okada K.	Identification of target genes of the bZIP transcription factor OsTGAP1, whose overexpression causes elicitor-induced hyperaccumulation of diterpenoid phytoalexins in rice cells.	PLoS ONE	9(8)	e105823	2014	DLT,BZIP37,DXS3,PLDbeta1,OC1,_,WRKY76,BIF2,_	dlt, OsGRAS32, OsDLT, OsDLT1, DTL1, OsGRAS-32, OsGRAS32, GRAS-32, GRAS32, SMOS2/DLT, SMOS2, OsSMOS2, OsGS6, GS6,OsTGAP1, TGAP1, OsbZIP37,OsDXS, OsDXS3, dxs3, DXS2, OsDXS2,OsPLDbeta1, OsC2DP79, C2DP79,Oc1*, Oc1, OC-I, SPOC-I, OsCP1, Oc, OCI, OsCYS1, OsPR6b, PR6b,,OsWRKY76, OsWRKY76.1, OsWRKY76.2, OsWRKY76.3,bif2, Osbif2, OsBIF2, OsPID, PID, OsAGC25, AGC25,
40347	25157029	Yang T., Zhang S., Hu Y., Wu F., Hu Q., Chen G., Cai J., Wu T., Moran N., Yu L., Xu G.	The Role of a Potassium Transporter OsHAK5 in Potassium Acquisition and Transport from Roots to Shoots in Rice at Low Potassium Supply Levels.	Plant Physiol.	166(2)	945-59	2014	HAK5	OsHAK5, FCO13, OsFCO13
40348	25219319	Wang F., Jing W., Zhang W.	The mitogen-activated protein kinase cascade MKK1-MPK4 mediates salt signaling in rice.	Plant Sci.	227	181-9	2014	MKK1,MPK6,MYBS3,ERF42	OsMKK1, OsMEK2, MEK2, OsMAPKK1, MAPKK1, OsMAP2K2, MAP2K2,OsMPK6, OsDR6, DR6, OsMPK4, MPK4, OsMAPK4, MAPK4,OsMYBS3,OsERF#042, OsERF042, OsERF42, AP2/EREBP#048, AP2/EREBP48, OsDREB2B, DREB2B, OsDREB2B2, OsDREB2A, DREB2A
40349	25107532	Sawada T., Nakamura Y., Ohdan T., Saitoh A., Francisco P.B., Suzuki E., Fujita N., Shimonaga T., Fujiwara S., Tsuzuki M., Colleoni C., Ball S.	Diversity of reaction characteristics of glucan branching enzymes and the fine structure of alpha-glucan from various sources.	Arch. Biochem. Biophys.	562	9-21	2014	SBE1,SBE3,SBE4	sbe1, Rbe1. Sbe1, sbe1*(QEI), RBE1, BEI, SBE I, QEI, OsBEI, BE1, OsSBE1, OsSBEI, SBEI,SBEIII*, SBEIII, Sbe3, RBE3, QEIIa, QEIIA, BEIIb, BEIIB, SBEIIb, OsBEIIb, sbe3, SBE III, OsSBEIIb, SBEIIb,RBE4, OsSBE4, BEIIa, QEIIb, BEIIA, OsBEIIa
40350	25150410	Tang W., Sun J., Liu J., Liu F., Yan J., Gou X., Lu B.R., Liu Y.	RNAi-directed downregulation of betaine aldehyde dehydrogenase 1 (OsBADH1) results in decreased stress tolerance and increased oxidative markers without affecting glycine betaine biosynthesis in rice (Oryza sativa).	Plant Mol. Biol.	86(4-5)	443-54	2014	BAD1,SK2(T)(SCL, FGR)	Badh1, badh1, BAD1, BADH1, OsBADH1, BADH, OsALDH10A5, ALDH10A5 ,sk2(t)(scl, fgr), fgr, scl, BAD2, BADH2, sk2, OsBADH2, Badh2, badh2, Os2AP, BADH-2, OsALDH10A8, ALDH10A8 
40351	25128531	Kosami K., Ohki I., Nagano M., Furuita K., Sugiki T., Kawano Y., Kawasaki T., Fujiwara T., Nakagawa A., Shimamoto K., Kojima C.	The Crystal Structure of the plant small GTPase OsRac1 Reveals Its Mode of Binding to NADPH Oxidase.	J. Biol. Chem.	289(41)	28569-78	2014	RAC1,RBOHB	OsRAC1, OsRac1, Os Rac1, Rac1, Os-Rac1,rbohB, OsrbohB, Os rbohB, OsRbohB, OsNox1, Nox1, Os-RbohB, RbohB, OsRboh1, Rboh1
40352	25113543	Zhang H., Jin X., Huang L., Hong Y., Zhang Y., Ouyang Z., Li X., Song F., Li D.	Molecular characterization of rice sphingosine-1-phosphate lyase gene OsSPL1 and functional analysis of its role in disease resistance response.	Plant Cell Rep.	33(10)	1745-56	2014	_	OsSPL, OsSPL1
40353	25039836	Ghosh A., Pareek A., Sopory S.K., Singla-Pareek SL.	A glutathione responsive rice Glyoxalase II, OsGLYII-2, functions in salinity adaptation by maintaining better photosynthesis efficiency and anti-oxidant pool.	Plant J.	80(1)	93-105	2014	GLYII-2	OsGLYII2, GLYII2, OsGLYII-2
40354	25173451	Park S., Moon J.C., Park Y.C., Kim J.H., Kim D.S., Jang C.S.	Molecular dissection of the response of a rice leucine-rich repeat receptor-like kinase (LRR-RLK) gene to abiotic stresses.	J. Plant Physiol.	171(17)	1645-53	2014	STLK,_,_,_,RLCK25,MRLK24	OsSTLK,,OsGIRL1, OsGIRL1-1, OsGIRL1-2, OsGIRL1-3,,OsRLCK25,OsMRLK24
40355	25219312	Baiya S., Hua Y., Ekkhara W., Ketudat Cairns JR.	Expression and enzymatic properties of rice (Oryza sativa L.) monolignol beta-glucosidases.	Plant Sci.	227	101-9	2014	BGLU16,BGLU18,BGLU14	Os4bglu16, Os4Bglu16, Os4BGlu16,Os4bglu18, Os4Bglu18, Os4BGlu18,Os4bglu14, Os4Bglu14, Os4BGlu14
40356	25195901	Do H., Kim I.S., Kim Y.S., Shin S.Y., Kim J.J., Mok J.E., Park S.I., Wi A.R., Park H., Lee J.H., Yoon H.S., Kim H.W.	Purification, characterization and preliminary X-ray crystallographic studies of Monodehydroascorbate reductase from Oryza sativa L. japonica.	Acta Crystallogr F Struct Biol Commun	70(Pt 9)	1244-8	2014	MDHAR3	MDHAR, OsMDHAR, OsMDAR3, MDAR3, OsMDHAR3, MDHAR1, OsMDHAR1
40357	25151129	Heo J.B., Lee Y.M., Yun H.R., Im C.H., Lee Y.S., Yi Y.B., Kwon C., Lim J., Bahk J.D.	Rice serine/threonine kinase 1 is required for the stimulation of OsNug2 GTPase activity.	J. Plant Physiol.	171(17)	1601-8	2014	_,_	OsNug2,OsSTK1
40358	25096923	Nayar S., Kapoor M., Kapoor S.	Post-translational regulation of rice MADS29 function: homodimerization or binary interactions with other seed-expressed MADS proteins modulate its translocation into the nucleus.	J. Exp. Bot.	65(18)	5339-50	2014	MADS66,MADS31,MADS24,MADS7,MADS51,MADS25,COG1,MADS56,RAG,MFO1,MADS33,MADS22,MADS5,LHS1,MADS18,MADS55,RAP1B,FST ,MADS26,PAP2	OsMADS66,OsMADS31,OsMADS24, MADS8, OsMADS8, OsMADS8/24 ,OsMADS7, OsMADS45, FDRMADS1, RMADS216, AGL6, M79, MADS45, Os MADS7, Os MADS45, OsMADS7/45,OsMADS51, OsMADS65, MADS65, qHd1, DLN36, OsDLN36,OsMADS25,OsMADS17, MADS17, NMADS3, RMADS213, nmads3,OsMADS56, FDRMADS8, RMADS214,MADS3, OsMADS3, OsMADS3(t), RMADS222, RAG1, rf3,OsMADS6, MADS6, OsMFO1,OsMADS33,OsMADS22, RMD1, DLN68, OsDLN68,OsMADS5, FDRMADS2,OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO, OsLHS1, OsLG3b, LG3b, qLGY3, LGY3, DLN80, OsDLN80, OLR, OsOLR, GW3p6, OsGW3p6, OsMADS1GW3p6, MADS1GW3p6, qLGY3/OsLG3b/GW3p6,OsMADS18, MADS2, OsMADS2, MADS28, OsMADS28, FDRMADS7, OsMADS18/28,OsMADS55, DLN163, OsDLN163,MADS14, OsMADS14, FDRMADS6, RMADS211, AGL10,OsMADS29, MADS29, OsFST,OsMADS26, FDRMADS3, RMADS220,MADS34, OsMADS34, RMADS212/RMADS217/RMADS221, OsPAP2/MADS34, MADS34/PAP2, PAP2/OsMADS34, OsMADS34/PAP2, OsMADS19
40359	25103621	Wang H., Zhu X., Li H., Cui J., Liu C., Chen X., Zhang W.	Induction of caspase-3-like activity in rice following release of cytochrome-f from the chloroplast and subsequent interaction with the ubiquitin-proteasome system.	Sci Rep	4	5989	2014	PETA,_	petA, Cytf, cytF, Cyt f, OsPETA,OsNuc37
40360	25099245	Fu K., Cheng Q., Liu Z., Chen Z., Wang Y., Ruan H., Zhou L., Xiong J., Xiao R., Liu S., Zhang Q., Yang D.	Immunotoxicity assessment of rice-derived recombinant Human serum albumin using human peripheral blood mononuclear cells.	PLoS ONE	9(8)	e104426	2014		
40361	25098603	Hwang J.E., Ahn J.W., Kwon S.J., Kim J.B., Kim S.H., Kang S.Y., Kim D.S.	Selection and molecular characterization of a high tocopherol accumulation rice mutant line induced by gamma irradiation.	Mol. Biol. Rep.	41(11)	7671-81	2014	_,VTE2,HPPD,VTE4,_,VTE1,HGGT	OsVTE3,OsVTE2, SGD1, OsSGD1, RTD1, OsRTD1, OsHPT, HPT ,OsHPPD, Osl30, l30,OsVTE4, OsgammaTMT, gammaTMT,OsVTE5,OsVTE1,OsHGGT, OsHST, HST
40362	25151617	Sasaki A., Yamaji N., Ma J.F.	Overexpression of OsHMA3 enhances Cd tolerance and expression of Zn transporter genes in rice.	J. Exp. Bot.	65(20)	6013-21	2014	ZIP5,GCC7,ZIP10,ZIP4,_,ZIP8	OsZIP5, OsZIP8, ZIP8, OsZIP9,HMA3, OsHMA3, OsHMA3a, OsHMA3n, osHMA3, OsHMP34, HMP34,OsZIP10,OsZIP4,OsZIP9, ZIP9,OsZIP8, OsZIP1, ZIP1, OsZIP13, ZIP13
40363	25146897	Lee S.H., Sakuraba Y., Lee T., Kim K.W., An G., Lee H.Y., Paek N.C.	Mutation of Oryza sativa CORONATINE INSENSITIVE 1b (OsCOI1b) delays leaf senescence.	J Integr Plant Biol			2014	_,ABI5,EAS1 ,D3,S3H,COI1B,COI2,_,ERF3,TIL1,EIL1,COI1,BZIP62,PDF1.2,NYC1,ICS1	OsSAG12, SAG12,OsABI5, OsbZIP10, OsABF1, OREB1, OsABI5-1, OsABI5-2, OsOREB1, OREB1 ,OsPAO, PAO, OsACD1, ACD1, OsEAS1, RCD2, OsRCD2,d3, dwf3, D3/OsMAX2, Os_F0760, SOL1, OsORE9, ORE9, MAX2, OsRFPH2-10, RFPH2-10, OsD3,  OsFBL27, FBL27,OsS3H, 2-ODD1, Os2-ODD1, 2ODD1, Os2ODD1, OsSAH3, SAH3, OsS3H/OsSAH3, OsS5H1, S5H1,OsCOI1b, COI1b, OsCOI1H, COI1H, OsFbox260, Fbox260, Os_F0646,  OsFBL23, FBL23, OsCOl-1, COl-1,OsCOI2,OsVSP2,AP37, OsAP37, OsERF3, OsERF#075, OsERF075, OsERF75, ERF75, AP2/EREBP#004, AP2/EREBP4, OsBIERF2, BIERF2, DLN23, OsDLN23,NAC2, OsNAC2, ONAC004, ONAC4, ONAC034, ONAC34, ONAC058, ONAC58, OMTN2, Ostil1, OsNAC2/ONAC004, OsORE1.2, DLN113, OsDLN113,OsEIL1, EIN3, OsEIN3, MHZ6, OsEIL1a, EIL1a, OsEIL1b, EIL1b,OsCOI1a, OsCOI1, Os_F0728, COI1a, F0728,  OsFBL4, FBL4,OsbZIP62, OsABF8, OsEEL, EEL,OsPDF1.2, DEFL6, OsDEFL6, OsDf-06, Df-06, DEF6, OsDEF6,nyc1, OsNYC1,OsICS1, OsICS, ICS
40364	24759811	Yokoo T., Saito H., Yoshitake Y., Xu Q., Asami T., Tsukiyama T., Teraishi M., Okumoto Y., Tanisaka T.	Se14, encoding a JmjC domain-containing protein, plays key roles in long-day suppression of rice flowering through the demethylation of H3K4me3 of RFT1.	PLoS ONE	9(4)	e96064	2014	EF1,RFT1,SE14	Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,FT-L 3, OsFTL3, FTL3, FT-L3, RFT, OsRFT1,JMJ701, Os JMJ701, Se14
40365	24743656	Venu R.C., Ma J., Jia Y., Liu G., Jia M.H., Nobuta K., Sreerekha M.V., Moldenhauer K., McClung A.M., Meyers B.C., Wang G.L.	Identification of candidate genes associated with positive and negative heterosis in rice.	PLoS ONE	9(4)	e95178	2014		
40366	24760072	Baloglu M.C., Eldem V., Hajyzadeh M., Unver T.	Genome-wide analysis of the bZIP transcription factors in cucumber.	PLoS ONE	9(4)	e96014	2014		
40367	24759881	Winkel A., Pedersen O., Ella E., Ismail A.M., Colmer T.D.	Gas film retention and underwater photosynthesis during field submergence of four contrasting rice genotypes.	J. Exp. Bot.	65(12)	3225-33	2014		
40368	24840818	Rathi S., Pathak K., Yadav R.N., Kumar B., Sarma R.N.	Association studies of dormancy and cooking quality traits in direct-seeded indica rice.	J. Genet.	93(1)	3-12	2014		
40369	24840849	Fasahat P., Rahman S., Ratnam W.	Genetic controls on starch amylose content in wheat and rice grains.	J. Genet.	93(1)	279-92	2014		
40370	24747952	Tuncel A., Kawaguchi J., Ihara Y., Matsusaka H., Nishi A., Nakamura T., Kuhara S., Hirakawa H., Nakamura Y., Cakir B., Nagamine A., Okita T.W., Hwang S.K., Satoh H.	The rice endosperm ADP-glucose pyrophosphorylase large subunit is essential for optimal catalysis and allosteric regulation of the heterotetrameric enzyme.	Plant Cell Physiol.	55(6)	1169-83	2014	AGPS2,AGPL2	OsAGPS2a, AGPS2A, AGPS2B, OsAGPS2, osagps2, APS2, APS2a, APS2b, AGPS2a, APGS2b, OsAGPS2b, AGPP, GAS8, OsAPS2, OsAPS2a, OsAPS2b,OsAGPL2, osagpl2, APL2, OsAPL2, AGPiso, sh2, Sh2, GIF2, GAS1 
40371	24729002	Muehe E.M., Eisele J.F., Daus B., Kappler A., Harter K., Chaban C.	Are rice (Oryza sativa L.) phosphate transporters regulated similarly by phosphate and arsenate? A comprehensive study.	Plant Mol. Biol.	85(3)	301-16	2014		
40372	24833511	Gill N., Buti M., Kane N., Bellec A., Helmstetter N., Berges H., Rieseberg L.H.	Sequence-Based Analysis of Structural Organization and Composition of the Cultivated Sunflower (Helianthus annuus L.) Genome.	Biology (Basel)	3(2)	295-319	2014		
40373	24760819	Iwakami S., Endo M., Saika H., Okuno J., Nakamura N., Yokoyama M., Watanabe H., Toki S., Uchino A., Inamura T.	cytochrome P450 CYP81A12 and CYP81A21 Are Associated with Resistance to Two acetolactate synthase Inhibitors in Echinochloa phyllopogon.	Plant Physiol.	165(2)	618-629	2014		
40374	24690462	Sabot F.	Tos17 rice element: incomplete but effective.	Mob DNA	5(1)	10	2014		
40375	24750781	Liu B., Wang L., Zhang J., Li J., Zheng H., Chen J., Lu M.	WUSCHEL-related Homeobox genes in Populus tomentosa: diversified expression patterns and a functional similarity in adventitious root formation.	BMC Genomics	15	296	2014		
40376	25007618	Zhou L.N., Yu H.Y., Zhang L., Ren S., Sui Y.Y., Yu L.J.	[Rice blast prediction model based on analysis of chlorophyll fluorescence spectrum].	Guang Pu Xue Yu Guang Pu Fen Xi	34(4)	1003-6	2014		
40377	24790111	Zhang Y., Zhang X., Liu B., Wang W., Liu X., Chen C., Liu X., Yang S., Ren H.	A GAMYB homologue CsGAMYB1 regulates sex expression of cucumber via an ethylene-independent pathway.	J. Exp. Bot.	65(12)	3201-13	2014		
40378	24742282	Wakasa Y., Oono Y., Yazawa T., Hayashi S., Ozawa K., Handa H., Matsumoto T., Takaiwa F.	RNA sequencing-mediated transcriptome analysis of rice plants in endoplasmic reticulum stress conditions.	BMC Plant Biol.	14	101	2014		
40379	24920970	Ishihara T., Hayano-Saito Y., Oide S., Ebana K., La N.T., Hayashi K., Ashizawa T., Suzuki F., Koizumi S.	Quantitative trait locus analysis of resistance to panicle blast in the rice cultivar Miyazakimochi.	Rice (N Y)	7(1)	2	2014		
40380	24734873	Han R., Jian C., Lv J., Yan Y., Chi Q., Li Z., Wang Q., Zhang J., Liu X., Zhao H.	Identification and characterization of microRNAs in the flag leaf and developing seed of wheat (Triticum aestivum L.).	BMC Genomics	15	289	2014		
40381	24787501	Kim Y., Wang M., Bai Y., Zeng Z., Guo F., Han N., Bian H., Wang J., Pan J., Zhu M.	Bcl-2 suppresses activation of VPEs by inhibiting cytosolic Ca?? level with elevated K? efflux in NaCl-induced PCD in rice.	Plant Physiol. Biochem.	80	168-75	2014		
40382	24780396	Park C.J., Song M.Y., Kim C.Y., Jeon J.S., Ronald P.C.	Rice BiP3 regulates immunity mediated by the PRRs XA3 and XA21 but not immunity mediated by the NB-LRR protein, Pi5.	Biochem. Biophys. Res. Commun.	448(1)	70-5	2014		
40383	25036957	Fukayama H., Fujiwara N., Hatanaka T., Misoo S., Miyao M.	Nocturnal phosphorylation of phosphoenolpyruvate carboxylase in the leaves of hygrophytic C3 monocots.	Biosci. Biotechnol. Biochem.	78(4)	609-13	2014		
40384	24755044	Song G., Guo Z., Liu Z., Qu X., Jiang D., Wang W., Zhu Y., Yang D.	The phenotypic predisposition of the parent in F1 hybrid is correlated with transcriptome preference of the positive general combining ability parent.	BMC Genomics	15	297	2014		
40385	24908511	Matsuda S., Nagasawa H., Yamashiro N., Yasuno N., Watanabe T., Kitazawa H., Takano S., Tokuji Y., Tani M., Takamure I., Kato K.	Rice RCN1/OsABCG5 mutation alters accumulation of essential and nonessential minerals and causes a high Na/K ratio, resulting in a salt-sensitive phenotype.	Plant Sci.	224	103-11	2014		
40386	24757324	Jha Y., Subramanian R.B.	PGPR regulate caspase-like activity, programmed cell death, and antioxidant enzyme activity in paddy under salinity.	Physiol Mol Biol Plants	20(2)	201-7	2014		
40387	24946604	Wang W.M., Deng Y., Zou H., Liang C.J.	[Effects of microcystins on growth and antioxidant system of rice roots].	Huan Jing Ke Xue	35(4)	1468-72	2014		
40388	24715026	Wang C., Fan Y., Zheng C., Qin T., Zhang X., Zhao K.	High-resolution genetic mapping of rice bacterial blight resistance gene Xa23.	Mol. Genet. Genomics	289(5)	745-53	2014		
40389	25202619	Gostel M.R., Weeks A.	Development of novel, exon-primed intron-crossing (EPIC) markers from EST databases and evaluation of their phylogenetic utility in Commiphora (Burseraceae).	Appl Plant Sci	2(4)		2014		
40390	24977183	Duan M., Huang P., Yuan X., Chen H., Huang J., Zhang H.	CMYB1 encoding a MYB transcriptional activator is involved in abiotic stress and circadian rhythm in rice.	ScientificWorldJournal	2014	178038	2014		
40391	24728538	Tang H., Luo D., Zhou D., Zhang Q., Tian D., Zheng X., Chen L., Liu Y.G.	The rice restorer Rf4 for wild-abortive cytoplasmic male sterility encodes a mitochondrial-localized PPR protein that functions in reduction of WA352 transcripts.	Mol Plant	7(9)	1497-500	2014	_,_,_,_,_,_,_,_,_	Rf4, Rf-4, PPR782a, PPR9, PPR3,PPR1, PPR1-454,PPR458, PPR7, PPR4,PPR794, PPR6, PPR6-794, PPR5,PPR454, PPR10, PPR2,PPR762, PPR4, PPR4-762,PPR8,WA352,PPR683, PPR5, PPR5-683
40392	24814750	Sheoran I.S., Koonjul P., Attieh J., Saini H.S.	Water-stress-induced inhibition of alpha-tubulin gene expression during growth, and its implications for reproductive success in rice.	Plant Physiol. Biochem.	80	291-9	2014		
40393	24755305	Bund? M., Montesinos L., Izquierdo E., Campo S., Mieulet D., Guiderdoni E., Rossignol M., Badosa E., Montesinos E., San Segundo B., Coca M.	Production of Cecropin A antimicrobial peptide in rice seed endosperm.	BMC Plant Biol.	14	102	2014		
40394	24691571	Chen D., Chen H., Zhang L., Shi X., Chen X.	Tocopherol-deficient rice plants display increased sensitivity to photooxidative stress.	Planta	239(6)	1351-62	2014		
40395	24763607	Jhanji S., Sadana U.S.	Genotypic variation in partitioning of dry matter and manganese between source and sink organs of rice under manganese stress.	Plant Cell Rep.	33(8)	1227-38	2014		
40396	25076839	Hsu Y.C., Tseng M.C., Wu Y.P., Lin M.Y., Wei F.J., Hwu K.K., Hsing Y.I., Lin Y.R.	Genetic factors responsible for eating and cooking qualities of rice grains in a recombinant inbred population of an inter-subspecific cross.	Mol. Breed.	34	655-673	2014		
40397	24714629	Hyodo K., Kaido M., Okuno T.	Traffic jam on the cellular secretory pathway generated by a replication protein from a plant RNA virus.	Plant Signal Behav	9	e28644	2014		
40398	24794197	Roodgar Nashta M., Shahpiri A., Mohammad Beigi M.	Substitution of Thr(55) by Gly and Lys(48) by Asp in OsTrx20 using site-directed mutagenesis.	Int. J. Biol. Macromol.	68	185-8	2014		
40399	24752581	Xie X., Chen Z., Cao J., Guan H., Lin D., Li C., Lan T., Duan Y., Mao D., Wu W.	Toward the positional cloning of qBlsr5a, a QTL underlying resistance to bacterial leaf streak, using overlapping sub-CSSLs in rice.	PLoS ONE	9(4)	e95751	2014		
40400	24752795	Mostofa M.G., Seraj Z.I., Fujita M.	Exogenous sodium nitroprusside and glutathione alleviate copper toxicity by reducing copper uptake and oxidative damage in rice (Oryza sativa L.) seedlings.	Protoplasma	251(6)	1373-86	2014		
40401	24771143	Li Q., Tang Z., Hu Y., Yu L., Liu Z., Xu G.	Functional analyses of a putative plasma membrane Na+/H+ antiporter gene isolated from salt tolerant Helianthus tuberosus.	Mol. Biol. Rep.	41(8)	5097-108	2014		
40402	24777609	Van Eck L., Davidson R.M., Wu S., Zhao B.Y., Botha A.M., Leach J.E., Lapitan N.L.	The transcriptional network of WRKY53 in cereals links oxidative responses to biotic and abiotic stress inputs.	Funct. Integr. Genomics	14(2)	351-62	2014		
40403	24738738	Baba-Kasai A., Hara N., Takano M.	Tissue-specific and light-dependent regulation of phytochrome gene expression in rice.	Plant Cell Environ.			2014		
40404	24811675	Nath S., Panda P., Mishra S., Dey M., Choudhury S., Sahoo L., Panda S.K.	Arsenic stress in rice: redox consequences and regulation by iron.	Plant Physiol. Biochem.	80	203-10	2014		
40405	24908500	Nakamura Y., Aihara S., Crofts N., Sawada T., Fujita N.	In vitro studies of enzymatic properties of starch synthases and interactions between starch synthase I and starch branching enzymes from rice.	Plant Sci.	224	1-8	2014		
40406	24748226	Zhang N., Yang J., Wang Z., Wen Y., Wang J., He W., Liu B., Si H., Wang D.	Identification of novel and conserved microRNAs related to drought stress in potato by deep sequencing.	PLoS ONE	9(4)	e95489	2014		
40407	24715609	Diao Y., Xu H., Li G., Yu A., Yu X., Hu W., Zheng X., Li S., Wang Y., Hu Z.	Cloning a glutathione peroxidase gene from Nelumbo nucifera and enhanced salt tolerance by overexpressing in rice.	Mol. Biol. Rep.	41(8)	4919-27	2014		
40408	24743556	Bao A., Zhao Z., Ding G., Shi L., Xu F., Cai H.	Accumulated expression level of cytosolic glutamine synthetase 1 gene (OsGS1;1 or OsGS1;2) alter plant development and the carbon-nitrogen metabolic status in rice.	PLoS ONE	9(4)	e95581	2014	GLN1;2,GLN1;1	OsGLN1;2, GSr, RGS8, OsGS1;2, GS1;2, GS1, OsGS1-2, GS1-2, OsGS1.2, GS1.2,OsGLN1;1, GS1, RGS28, OsGS1;1, GS1;1, OsGS, GS1, OsGS1, GLN1-1, OsGS1-1, GS1-1, GS1.1, OsGS1.1
40409	24718783	Cai C., Zhang X., Niu E., Zhao L., Li N., Wang L., Ding L., Guo W.	GhPSY, a Phytoene synthase gene, is related to the red plant phenotype in upland cotton (Gossypium hirsutum L.).	Mol. Biol. Rep.	41(8)	4941-52	2014		
40410	24821718	Tan J., Tan Z., Wu F., Sheng P., Heng Y., Wang X., Ren Y., Wang J., Guo X., Zhang X., Cheng Z., Jiang L., Liu X., Wang H., Wan J.	A novel chloroplast-localized pentatricopeptide repeat protein involved in splicing affects chloroplast development and abiotic stress response in rice.	Mol Plant	7(8)	1329-49	2014	WSL,RPL2	,rpl2
40411	24841201	Kawano Y., Fujiwara T., Yao A., Housen Y., Hayashi K., Shimamoto K.	Palmitoylation-dependent membrane localization of the rice resistance protein Pit is critical for the activation of the small GTPase OsRac1.	J. Biol. Chem.	289(27)	19079-88	2014		
40412	24844783	Maejima E., Watanabe T.	Proportion of phospholipids in the plasma membrane is an important factor in Al tolerance.	Plant Signal Behav	9		2014		
40413	25036830	Kamimura M., Han Y., Kito N., Che F.S.	Identification of interacting proteins for calcium-dependent protein kinase 8 by a novel screening system based on bimolecular fluorescence complementation.	Biosci. Biotechnol. Biochem.	78(3)	438-47	2014		
40414	24808099	Gao S., Fang J., Xu F., Wang W., Sun X., Chu J., Cai B., Feng Y., Chu C.	CYTOKININ OXIDASE/DEHYDROGENASE4 Integrates Cytokinin and Auxin Signaling to Control Rice crown root Formation.	Plant Physiol.	165(3)	1035-1046	2014	RR2,ARF6B,RR3,CKX4	rr2, Osrr2, OsRR2, Rra10, OsRRA10,OsARF6b, OsARF25, ARF25,OSRR3, OsRR3, rr3, Rra7, OsRRA7,OsCKX4, ckx4, OsSCRM, OsSCRM2, SCRM, SCRM2
40415	25055694	Wang S.L., Zhang Y.X., Liu H.Z., Xin H.	[Phytotoxicity of copper oxide nanoparticles to metabolic activity in the roots of rice].	Huan Jing Ke Xue	35(5)	1968-73	2014		
40416	24792034	Huang J., Cai M., Long Q., Liu L., Lin Q., Jiang L., Chen S., Wan J.	OsLOX2, a rice type I lipoxygenase, confers opposite effects on seed germination and longevity.	Transgenic Res.	23(4)	643-55	2014		
40417	24808924	Gu K., Mao H., Yin Z.	Production of marker-free transgenic Jatropha curcas expressing hybrid Bacillus thuringiensis delta-endotoxin Cry1Ab/1Ac for resistance to larvae of tortrix moth (Archips micaceanus).	Biotechnol Biofuels	7	68	2014		
40418	24886269	Liu X., Zhou X., Li Y., Tian J., Zhang Q., Li S., Wang L., Zhao J., Chen R., Fan Y.	Identification and functional characterization of bidirectional gene pairs and their intergenic regions in maize.	BMC Genomics	15	338	2014		
40419	24817160	Zhao Y., Ma Q., Jin X., Peng X., Liu J., Deng L., Yan H., Sheng L., Jiang H., Cheng B.	A novel Maize homeodomain-leucine zipper (HD-Zip) I gene, Zmhdz10, positively regulates drought and salt tolerance in both rice and Arabidopsis.	Plant Cell Physiol.	55(6)	1142-56	2014		
40420	24904618	Hu Y., Lai Y., Zhu D.	Transcription regulation by CHD proteins to control plant development.	Front Plant Sci	5	223	2014		
40421	24920973	Wu L.B., Shhadi M.Y., Gregorio G., Matthus E., Becker M., Frei M.	Genetic and physiological analysis of tolerance to acute iron toxicity in rice.	Rice (N Y)	7(1)	8	2014		
40422	24788204	Xiao N., Huang W.N., Zhang X.X., Gao Y., Li A.H., Dai Y., Yu L., Liu G.Q., Pan C.H., Li Y.H., Dai Z.Y., Chen J.M.	Fine mapping of qRC10-2, a quantitative trait locus for cold tolerance of rice roots at seedling and mature stages.	PLoS ONE	9(5)	e96046	2014		
40423	24920971	Xu R., Li H., Qin R., Wang L., Li L., Wei P., Yang J.	Gene targeting using the Agrobacterium tumefaciens-mediated CRISPR-Cas system in rice.	Rice (N Y)	7(1)	5	2014		
40424	24904616	Coelho C.P., Minow M.A., Chalfun-J?nior A., Colasanti J.	Putative sugarcane FT/TFL1 genes delay flowering time and alter reproductive architecture in Arabidopsis.	Front Plant Sci	5	221	2014		
40425	24885138	Zhang F., Ma X.F., Gao Y.M., Hao X.B., Li Z.K.	Genome-wide response to selection and genetic basis of cold tolerance in rice (Oryza sativa L.).	BMC Genet.	15	55	2014		
40426	24820172	Oliver R.E., Islamovic E., Obert D.E., Wise M.L., Herrin L.L., Hang A., Harrison S.A., Ibrahim A., Marshall J.M., Miclaus K.J., Lazo G.R., Hu G., Jackson E.W.	Comparative systems biology reveals allelic variation modulating Tocochromanol profiles in Barley (Hordeum vulgare L.).	PLoS ONE	9(5)	e96276	2014		
40427	24884377	Yang S., Weers B.D., Morishige D.T., Mullet J.E.	CONSTANS is a photoperiod regulated activator of flowering in sorghum.	BMC Plant Biol.	14	148	2014		
40428	24821956	Xia J., Yamaji N., Che J., Shen R.F., Ma J.F.	Differential expression of Nrat1 is responsible for Al-tolerance QTL on chromosome 2 in rice.	J. Exp. Bot.	65(15)	4297-304	2014		
40429	24949276	Doni F., Isahak A., Che Mohd Zain CR., Wan Yusoff WM.	Physiological and growth response of rice plants (Oryza sativa L.) to Trichoderma spp. inoculants.	AMB Express	4	45	2014		
40430	24853557	Xie X., Kagawa T., Takano M.	The phytochrome B/phytochrome C heterodimer is necessary for phytochrome C-mediated responses in rice seedlings.	PLoS ONE	9(5)	e97264	2014		
40431	24847340	Do P.T., Drechsel O., Heyer A.G., Hincha D.K., Zuther E.	Changes in free polyamine levels, expression of polyamine biosynthesis genes, and performance of rice cultivars under salt stress: a comparison with responses to drought.	Front Plant Sci	5	182	2014		
40432	24817546	Sun L., Ye M., Hao H., Wang N., Wang Y., Cheng T., Zhang Q., Wu R.	A model framework for identifying genes that guide the evolution of heterochrony.	Mol. Biol. Evol.	31(8)	2238-47	2014		
40433	25069161	Wang R., Liu S., Zhou F., Ding C., Hua C.	Exogenous ascorbic acid and glutathione alleviate oxidative stress induced by salt stress in the chloroplasts of Oryza sativa L.	Z. Naturforsch., C, J. Biosci.	69(5-6)	226-36			
40434	24904613	Zanke C., Ling J., Plieske J., Kollers S., Ebmeyer E., Korzun V., Argillier O., Stiewe G., Hinze M., Beier S., Ganal M.W., R?der MS.	Genetic architecture of main effect QTL for heading date in European winter wheat.	Front Plant Sci	5	217	2014		
40435	24850835	Ikeuchi M., Uebayashi N., Sato F., Endo T.	Physiological functions of PsbS-dependent and PsbS-independent NPQ under naturally fluctuating light conditions.	Plant Cell Physiol.	55(7)	1286-95	2014		
40436	24748469	Zhang F., Wang L., Fan K., Wu J., Ying Y.	The detection of T-Nos, a genetic element present in GMOs, by cross-priming isothermal amplification with real-time fluorescence.	Anal Bioanal Chem	406(13)	3069-78	2014		
40437	24863060	Chittela R.K., Gupta G.D., Ballal A.	Characterization of a plant (rice) translin and its comparative analysis with human translin.	Planta	240(2)	357-68	2014		
40438	24841958	Khan M.A., Sen P.P., Bhuiyan R., Kabir E., Chowdhury A.K., Fukuta Y., Ali A., Latif M.A.	Phenotypic screening and molecular analysis of blast resistance in fragrant rice for marker assisted selection.	C. R. Biol.	337(5)	318-24	2014		
40439	25110131	Nutaratat P., Srisuk N., Arunrattiyakorn P., Limtong S.	Plant growth-promoting traits of epiphytic and endophytic yeasts isolated from rice and sugar cane leaves in Thailand.	Fungal Biol	118(8)	683-94	2014		
40440	24852039	Yang Y., Wang D., Zhang X., Fang J., Shen Z., Lin C.	Transgenic rice as bioreactor for production of the Candida antarctica lipase B.	Plant Biotechnol. J.	12(7)	963-70	2014		
40441	24840865	Kim Y.H., Khan A.L., Waqas M., Jeong H.J., Kim D.H., Shin J.S., Kim J.G., Yeon M.H., Lee I.J.	Regulation of jasmonic acid biosynthesis by silicon application during physical injury to Oryza sativa L.	J. Plant Res.	127(4)	525-32	2014		
40442	24819712	Zeng F., Wu X., Qiu B., Wu F., Jiang L., Zhang G.	Physiological and proteomic alterations in rice (Oryza sativa L.) seedlings under hexavalent chromium stress.	Planta	240(2)	291-308	2014		
40443	24795339	Zhang G.H., Li S.Y., Wang L., Ye W.J., Zeng D.L., Rao Y.C., Peng Y.L., Hu J., Yang Y.L., Xu J., Ren D.Y., Gao Z.Y., Zhu L., Dong G.J., Hu X.M., Yan M.X., Guo L.B., Li C.Y., Qian Q.	LSCHL4 from Japonica Cultivar, which is allelic to NAL1, increases yield of indica super rice 93-11.	Mol Plant	7(8)	1350-64	2014	NAL1	nal1, cul1, GPS, SPIKE, SPIKE/LSCHL4/NAL1/GPS, SPIKE/NAL1, LSCHL4, OsNAL1
40444	24840062	Chen Y.A., Chi W.C., Trinh N.N., Huang L.Y., Chen Y.C., Cheng K.T., Huang T.L., Lin C.Y., Huang H.J.	Transcriptome profiling and physiological studies reveal a major role for aromatic amino acids in mercury stress tolerance in rice seedlings.	PLoS ONE	9(5)	e95163	2014		
40445	24885019	Yonemaru J., Mizobuchi R., Kato H., Yamamoto T., Yamamoto E., Matsubara K., Hirabayashi H., Takeuchi Y., Tsunematsu H., Ishii T., Ohta H., Maeda H., Ebana K., Yano M.	Genomic regions involved in yield potential detected by genome-wide association analysis in Japanese high-yielding rice cultivars.	BMC Genomics	15	346	2014		
40446	24877598	Chang B.V., Chang Y.M.	Biodegradation of toxic chemicals by Pleurotus eryngii in submerged fermentation and solid-state fermentation.	J Microbiol Immunol Infect			2014		
40447	24856588	Yoshizawa T., Miyahara M., Kouzuma A., Watanabe K.	Conversion of activated-sludge reactors to microbial fuel cells for wastewater treatment coupled to electricity generation.	J. Biosci. Bioeng.			2014		
40448	25018755	Sprink T., Hartung F.	The splicing fate of plant SPO11 genes.	Front Plant Sci	5	214	2014		
40449	24886329	Zhou Q., Jia J., Huang X., Yan X., Cheng L., Chen S., Li X., Peng X., Liu G.	The large-scale investigation of gene expression in Leymus chinensis stigmas provides a valuable resource for understanding the mechanisms of poaceae self-incompatibility.	BMC Genomics	15	399	2014		
40450	24860584	Matsubara K., Hori K., Ogiso-Tanaka E., Yano M.	Cloning of quantitative trait genes from rice reveals conservation and divergence of photoperiod flowering pathways in Arabidopsis and rice.	Front Plant Sci	5	193	2014		
40451	24796672	Yang K.M., Kim B.M., Park J.B.	omega-Hydroxyundec-9-enoic acid induces apoptosis through ROS-mediated endoplasmic reticulum stress in non-small cell lung cancer cells.	Biochem. Biophys. Res. Commun.	448(3)	267-73	2014		
40452	24784760	Campo S., Baldrich P., Messeguer J., Lalanne E., Coca M., San Segundo B.	Overexpression of a Calcium-Dependent Protein Kinase Confers Salt and Drought Tolerance in Rice by Preventing Membrane Lipid Peroxidation.	Plant Physiol.	165(2)	688-704	2014		
40453	25036967	Satoh Y., Miki S., Ose T., Oikawa A., Maenaka K., Terauchi R., Asano K., Sone T.	Heterologous production, purification, and immunodetection of Magnaporthe oryzae avirulence protein AVR-Pia.	Biosci. Biotechnol. Biochem.	78(4)	680-6	2014		
40454	24291688	Mukhopadhyay R., Bhattacharjee H., Rosen B.P.	Aquaglyceroporins: generalized metalloid channels.	Biochim. Biophys. Acta	1840(5)	1583-91	2014		
40455	25129932	Jia Z.J., Han L., Wang G., Zhang T.S.	[Adaptability analysis of FAO Penman-Monteith model over typical underlying surfaces in the Sanjiang Plain, Northeast China].	Ying Yong Sheng Tai Xue Bao	25(5)	1327-34	2014		
40456	24878425	Yan J., Tian H., Wang S., Shao J., Zheng Y., Zhang H., Guo L., Ding Y.	pollen developmental defects in ZD-CMS rice line explored by cytological, molecular and proteomic approaches.	J Proteomics	108	110-23	2014		
40457	25055647	Tang X.B., Huang C., Lou S.R., Qiao L.P., Wang H.L., Zhou M., Chen M.H., Chen C.H., Wang Q., Li G.L., Li L., Huang H.Y., Zhang G.F.	[Emission factors and PM chemical composition study of biomass burning in the Yangtze River Delta region].	Huan Jing Ke Xue	35(5)	1623-32	2014		
40458	24899903	Biswas D.K., Bhunia R., Maji D., Das P.	Contaminated pond water favors cholera outbreak at haibatpur village, purba medinipur district, west bengal, India.	J Trop Med	2014	764530	2014		
40459	24886295	Yang Y., Xu J., Leng Y., Xiong G., Hu J., Zhang G., Huang L., Wang L., Guo L., Li J., Chen F., Qian Q., Zeng D.	Quantitative trait loci identification, fine mapping and gene expression profiling for ovicidal response to whitebacked planthopper (Sogatella furcifera Horvath) in rice (Oryza sativa L.).	BMC Plant Biol.	14	145	2014	_	qWL6
40460	24919709	Chern M., Bai W., Ruan D., Oh T., Chen X., Ronald P.C.	Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.	BMC Genomics	15	461	2014		
40461	25071407	Han Y.Y., Yan Q.H., Ming F.	An effective homologous cloning method for isolating novel miR172s from Phalaenopsis hybrida.	Genet. Mol. Biol.	37(2)	414-22	2014		
40462	24917171	Sheng P., Tan J., Jin M., Wu F., Zhou K., Ma W., Heng Y., Wang J., Guo X., Zhang X., Cheng Z., Liu L., Wang C., Liu X., Wan J.	albino midrib 1, encoding a putative potassium efflux antiporter, affects chloroplast development and drought tolerance in rice.	Plant Cell Rep.	33(9)	1581-94	2014		
40463	25197449	Liu Y., Ye W., Zheng J., Fang L., Peng D., Ruan L., Sun M.	High-quality draft genome sequence of nematocidal Bacillus thuringiensis Sbt003.	Stand Genomic Sci	9(3)	624-31	2014		
40464	25289005	Shin S.H., Pak J.H., Kim M.J., Kim H.J., Oh J.S., Choi H.K., Jung H.W., Chung Y.S.	An Acidic PATHOGENESIS-RELATED1 Gene of Oryza grandiglumis is Involved in disease resistance Response Against Bacterial Infection.	Plant Pathol. J.	30(2)	208-14	2014		
40465	24951312	Miyazawa S., Hayashi K., Nakamura H., Hasegawa T., Miyao M.	Elevated CO2 decreases the Photorespiratory NH3 production but does not decrease the NH3 compensation point in rice leaves.	Plant Cell Physiol.	55(9)	1582-91	2014		
40466	24939035	Kim M.K., Jang M.S., Youn J.H., Son S.H., Lee J.E., Kim T.W., Kim S.K.	Occurrence of phosphorylated castasterone in Arabidopsis thaliana and Lycopersicum esculentum.	Physiol Plant			2014		
40467	24991566	Hasanuzzaman M., Alam M.M., Rahman A., Hasanuzzaman M., Nahar K., Fujita M.	Exogenous proline and glycine betaine mediated upregulation of antioxidant defense and glyoxalase systems provides better protection against salt-induced oxidative stress in two rice (Oryza sativa L.) varieties.	Biomed Res Int	2014	757219	2014		
40468	25014263	Nguyen V.N., Moon S., Jung K.H.	Genome-wide expression analysis of rice ABC transporter family across spatio-temporal samples and in response to abiotic stresses.	J. Plant Physiol.	171(14)	1276-88	2014		
40469	24965356	Dansana P.K., Kothari K.S., Vij S., Tyagi A.K.	OsiSAP1 overexpression improves water-deficit stress tolerance in transgenic rice by affecting expression of endogenous stress-related genes.	Plant Cell Rep.	33(9)	1425-40	2014		
40470	24944111	Wang B.J., Hsu Y.F., Chen Y.C., Wang C.S.	Characterization of a lily anther-specific gene encoding cytoskeleton-binding glycoproteins and overexpression of the gene causes severe inhibition of pollen tube growth.	Planta	240(3)	525-37	2014		
40471	24987305	Kawasaki-Tanaka A., Fukuta Y.	Genetic variation in resistance to blast disease (Pyricularia oryzae Cavara) in Japanese rice (Oryza sativa L.), as determined using a differential system.	Breed. Sci.	64(2)	183-92	2014		
40472	24966130	Cigan A.M., Haug-Collet K., Clapp J.	Transcriptional silencing of heterologous anther promoters in maize: a genetic method to replace detasseling for seed production.	Plant Reproduction	27(3)	109-20	2014		
40473	24976603	Wang Y., Zhang J., Yu J., Jiang X., Sun L., Wu M., Chen G., Lv C.	Photosynthetic changes of flag leaves during senescence stage in super high-yield hybrid rice LYPJ grown in field condition.	Plant Physiol. Biochem.	82	194-201	2014		
40474	24893047	Ogo Y., Kakei Y., Itai R.N., Kobayashi T., Nakanishi H., Nishizawa N.K.	Tissue-specific transcriptional profiling of iron-deficient and cadmium-stressed rice using laser capture microdissection.	Plant Signal Behav	9		2014		
40475	24890396	Hong Y., Chen L., Du L.P., Su Z., Wang J., Ye X., Qi L., Zhang Z.	Transcript suppression of TaGW2 increased grain width and weight in bread wheat.	Funct. Integr. Genomics	14(2)	341-9	2014		
40476	24888863	Yamada Y., Furusawa S., Nagasaka S., Shimomura K., Yamaguchi S., Umehara M.	Strigolactone signaling regulates rice leaf senescence in response to a phosphate deficiency.	Planta	240(2)	399-408	2014		
40477	24921928	Teramoto S., Tsukiyama T., Okumoto Y., Tanisaka T.	Early embryogenesis-specific expression of the rice transposon Ping enhances amplification of the MITE mPing.	PLoS Genet.	10(6)	e1004396	2014		
40478	24987300	Hoai T.T., Matsusaka H., Toyosawa Y., Suu T.D., Satoh H., Kumamaru T.	Influence of single-nucleotide polymorphisms in the gene encoding granule-bound starch synthase I on amylose content in Vietnamese rice cultivars.	Breed. Sci.	64(2)	142-8	2014		
40479	24896089	Zhai C., Zhang Y., Yao N., Lin F., Liu Z., Dong Z., Wang L., Pan Q.	Function and interaction of the coupled genes responsible for Pik-h encoded rice blast resistance.	PLoS ONE	9(6)	e98067	2014	PIK	Pik, RMg8, Pi-k, Pik-2, Pik-1, Pik1, Pik2, Pik-H4, Pikp-1, Pikh-1, Pik1-H4, Pikh-2, Pik2-H4
40480	25381433	Borrell A.K., Mullet J.E., George-Jaeggli B., van Oosterom EJ., Hammer G.L., Klein P.E., Jordan D.R.	Drought adaptation of stay-green sorghum is associated with canopy development, leaf anatomy, root growth, and water uptake.	J. Exp. Bot.	65(21)	6251-63	2014		
40481	24913125	Ma T., Li M., Zhao A., Xu X., Liu G., Cheng L.	LcWRKY5: an unknown function gene from sheepgrass improves drought tolerance in transgenic Arabidopsis.	Plant Cell Rep.	33(9)	1507-18	2014		
40482	24980094	Wang N., Zhang D., Wang Z., Xun H., Ma J., Wang H., Huang W., Liu Y., Lin X., Li N., Ou X., Zhang C., Wang M.B., Liu B.	Mutation of the RDR1 gene caused genome-wide changes in gene expression, regional variation in small RNA clusters and localized alteration in DNA methylation in rice.	BMC Plant Biol.	14	177	2014		
40483	24947835	Xiao Y., Chen Y., Charnikhova T., Mulder P.P., Heijmans J., Hoogenboom A., Agalou A., Michel C., Morel J.B., Dreni L., Kater M.M., Bouwmeester H., Wang M., Zhu Z., Ouwerkerk P.B.	OsJAR1 is required for JA-regulated floret opening and anther dehiscence in rice.	Plant Mol. Biol.	86(1-2)	19-33	2014	JAR1	OsJAR1, OsGH3.5, GH3.5, OsGH3-5, GH3-5
40484	24955773	Ouyang S., Zhang D., Han J., Zhao X., Cui Y., Song W., Huo N., Liang Y., Xie J., Wang Z., Wu Q., Chen Y.X., Lu P., Zhang D.Y., Wang L., Sun H., Yang T., Keeble-Gagnere G., Appels R., Dole?el J., Ling H.Q., Luo M., Gu Y., Sun Q., Liu Z.	Fine physical and genetic mapping of powdery mildew resistance gene MlIW172 originating from wild emmer (Triticum dicoccoides).	PLoS ONE	9(6)	e100160	2014		
40485	24905696	Gupta M., Ahmad M.A.	Arsenate induced differential response in rice genotypes.	Ecotoxicol. Environ. Saf.	107	46-54	2014		
40486	25076836	Trijatmiko K.R., Supriyanta, Prasetiyono J., Thomson M.J., Vera Cruz CM., Moeljopawiro S., Pereira A.	Meta-analysis of quantitative trait loci for grain yield and component traits under reproductive-stage drought stress in an upland rice population.	Mol. Breed.	34	283-295	2014		
40487	24938486	Zhong J., Lei X.H., Zhu J.Z., Song G., Zhang Y.D., Chen Y., Gao B.D.	Detection and sequence analysis of two novel co-infecting double-strand RNA mycoviruses in Ustilaginoidea virens.	Arch. Virol.	159(11)	3063-70	2014		
40488	25017165	Hirose T., Hashida Y., Aoki N., Okamura M., Yonekura M., Ohto C., Terao T., Ohsugi R.	Analysis of gene-disruption mutants of a sucrose phosphate synthase gene in rice, OsSPS1, shows the importance of sucrose synthesis in pollen germination.	Plant Sci.	225	102-6	2014		
40489	24893854	Okishio T., Sasayama D., Hirano T., Akimoto M., Itoh K., Azuma T.	Growth promotion and inhibition of the Amazonian wild rice species Oryza grandiglumis to survive flooding.	Planta	240(3)	459-69	2014		
40490	24987297	Ootsuka K., Takahashi I., Tanaka K., Itani T., Tabuchi H., Yoshihashi T., Tonouchi A., Ishikawa R.	Genetic polymorphisms in Japanese fragrant landraces and novel fragrant allele domesticated in northern Japan.	Breed. Sci.	64(2)	115-24	2014		
40491	24946831	Fang Y., Hu J., Xu J., Yu H., Shi Z., Xiong G., Zhu L., Zeng D., Zhang G., Gao Z., Dong G., Yan M., Guo L., Wang Y., Qian Q.	Identification and characterization of mini1, a gene regulating rice shoot development.	J Integr Plant Biol			2014		
40492	24953696	Liang W., Cui W., Ma X., Wang G., Huang Z.	Function of wheat Ta-UnP gene in enhancing salt tolerance in transgenic Arabidopsis and rice.	Biochem. Biophys. Res. Commun.	450(1)	794-801	2014		
40493	24981923	Seto Y., Yamaguchi S.	Strigolactone biosynthesis and perception.	Curr. Opin. Plant Biol.	21C	1-6	2014		
40494	25040950	Liu Y., Chen L., Fu D., Lou Q., Mei H., Xiong L., Li M., Xu X., Mei X., Luo L.	Dissection of additive, epistatic effect and QTL ~ environment interaction of quantitative trait loci for sheath blight resistance in rice.	Hereditas	151(2-3)	28-37	2014		
40495	24950734	Qian Y., Xi Y., Cheng B., Zhu S.	Genome-wide identification and expression profiling of DNA methyltransferase gene family in maize.	Plant Cell Rep.	33(10)	1661-72	2014		
40496	24937109	Phing Lau WC., Latif M.A., Y Rafii M., Ismail M.R., Puteh A.	Advances to improve the eating and cooking qualities of rice by marker-assisted breeding.	Crit. Rev. Biotechnol.		1-12	2014		
40497	25093205	Mahajan G., Ramesha M.S., Chauhan B.S.	Response of rice genotypes to weed competition in dry direct-seeded rice in India.	ScientificWorldJournal	2014	641589	2014		
40498	24962048	Zhang Z., Zhang J., Chen Y., Li R., Wang H., Ding L., Wei J.	Isolation, structural analysis, and expression characteristics of the maize (Zea mays L.) hexokinase gene family.	Mol. Biol. Rep.	41(9)	6157-66	2014		
40499	24920304	Byeon Y., Lee H.Y., Lee K., Back K.	A rice chloroplast transit peptide sequence does not alter the cytoplasmic localization of sheep serotonin N-acetyltransferase expressed in transgenic rice plants.	J. Pineal Res.	57(2)	147-54	2014		
40500	24911169	Jing S., Zhang L., Ma Y., Liu B., Zhao Y., Yu H., Zhou X., Qin R., Zhu L., He G.	Genome-wide mapping of virulence in brown planthopper identifies loci that break down host plant resistance.	PLoS ONE	9(6)	e98911	2014		
40501	24819479	Du M., Luo M., Zhang R., Finnegan E.J., Koltunow A.M.	Imprinting in rice: the role of DNA and histone methylation in modulating parent-of-origin specific expression and determining transcript start sites.	Plant J.	79(2)	232-42	2014		
40502	24899551	Kobae Y., Fujiwara T.	Earliest colonization events of Rhizophagus irregularis in rice roots occur preferentially in previously uncolonized cells.	Plant Cell Physiol.	55(8)	1497-510	2014		
40503	25358159	Li Y.N., Jiang D., Liu Y.Y., Ding W.M., Ding Q.S., Zha L.Y.	[Testing of germination rate of hybrid rice seeds based on near-infrared reflectance spectroscopy].	Guang Pu Xue Yu Guang Pu Fen Xi	34(6)	1528-32	2014		
40504	24924297	Lin Z., Zhang X., Yang X., Li G., Tang S., Wang S., Ding Y., Liu Z.	Proteomic analysis of proteins related to rice grain chalkiness using iTRAQ and a novel comparison system based on a notched-belly mutant with white-belly.	BMC Plant Biol.	14	163	2014		
40505	24945975	Liu Z., Qian J., Liu B., Wang Q., Ni X., Dong Y., Zhong K., Wu Y.	Effects of the magnetic resonance imaging contrast agent Gd-DTPA on plant growth and root imaging in rice.	PLoS ONE	9(6)	e100246	2014		
40506	24888399	Shen W., Chen G., Xu J., Zhen X., Ma J., Zhang X., Lv C., Gao Z.	High light acclimation of Oryza sativa L. leaves involves specific photosynthetic-sourced changes of NADPH/NADP(+) in the midvein.	Protoplasma			2014		
40507	25028572	Chen Y., Chen X., Wang H., Bao Y., Zhang W.	Examination of the leaf proteome during flooding stress and the induction of programmed cell death in maize.	Proteome Sci	12	33	2014		
40508	24972305	Yang B., Ma H.Y., Wang X.M., Jia Y., Hu J., Li X., Dai C.C.	Improvement of nitrogen accumulation and metabolism in rice (Oryza sativa L.) by the endophyte Phomopsis liquidambari.	Plant Physiol. Biochem.	82	172-82	2014		
40509	25158521	Chang T.J., Cui X.Q., Ruan Z., Zhao X.L.	[Long-term effects of tillage methods on heavy metal accumulation and availability in purple paddy soil].	Huan Jing Ke Xue	35(6)	2381-91	2014		
40510	24798203	Xu Y., Zhang S., Guo H., Wang S., Xu L., Li C., Qian Q., Chen F., Geisler M., Qi Y., Jiang de A.	OsABCB14 functions in auxin transport and iron homeostasis in rice (Oryza sativa L.).	Plant J.	79(1)	106-17	2014		
40511	24987490	Fujikawa Y., Nakanishi T., Kawakami H., Yamasaki K., Sato M.H., Tsuji H., Matsuoka M., Kato N.	Split luciferase complementation assay to detect regulated protein-protein interactions in rice protoplasts in a large-scale format.	Rice (N Y)	7(1)	11	2014		
40512	24939891	Angeles-Shim RB., Vinarao R.B., Marathi B., Jena K.K.	Molecular analysis of Oryza latifolia Desv. (CCDD genome)-derived introgression lines and identification of value-added traits for rice (O. sativa L.) improvement.	J. Hered.	105(5)	676-89			
40513	24963001	Yang M., Zhang Y., Zhang L., Hu J., Zhang X., Lu K., Dong H., Wang D., Zhao F.J., Huang C.F., Lian X.	OsNRAMP5 contributes to manganese translocation and distribution in rice shoots.	J. Exp. Bot.	65(17)	4849-61	2014		
40514	24794921	Shirsekar G.S., Vega-S?nchez ME., Bordeos A., Baraoidan M., Swisshelm A., Fan J., Park C.H., Leung H., Wang G.L.	Identification and characterization of suppressor mutants of spl11- mediated cell death in rice.	Mol. Plant Microbe Interact.	27(6)	528-36	2014	PR10A,SPL11,SDS1,NAC4,KS4,SDS3,POX3006	PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,spl11, spl11*, OsPUB11, PUB11,  OsPUB11/SPL11, PUB11/SPL11,OsSDS1,OsNAC4, NAC68, ONAC068, OnNAC4*, OnNAC4, OsNAC4/ONAC068,OsKS4, KS4, KSL4, OsKSL4, DTS2, OsDTS2, OsTPS16, TPS16, TPS8, OsTPS8,OsSDS3,POX3006, prx114, Osprx114, PO-C1, POC-1, POC1, OsPOC1, Prx14, OsPrx14, POD3006, OsPOD3006
40515	24948669	Wang X., Tam N.F., Fu S., Ametkhan A., Ouyang Y., Ye Z.	Selenium addition alters mercury uptake, bioavailability in the rhizosphere and root anatomy of rice (Oryza sativa).	Ann. Bot.	114(2)	271-8	2014		
40516	24906815	Wang Z., Cui Y., Chen Y., Zhang D., Liang Y., Zhang D., Wu Q., Xie J., Ouyang S., Li D., Huang Y., Lu P., Wang G., Yu M., Zhou S., Sun Q., Liu Z.	Comparative genetic mapping and genomic region collinearity analysis of the powdery mildew resistance gene Pm41.	Theor. Appl. Genet.	127(8)	1741-51	2014		
40517	25053919	Naito K., Monden Y., Yasuda K., Saito H., Okumoto Y.	mPing: The bursting transposon.	Breed. Sci.	64(2)	109-14	2014		
40518	24891164	Ayano M., Kani T., Kojima M., Sakakibara H., Kitaoka T., Kuroha T., Angeles-Shim RB., Kitano H., Nagai K., Ashikari M.	Gibberellin biosynthesis and signal transduction is essential for internode elongation in deepwater rice.	Plant Cell Environ.	37(10)	2313-24	2014		
40519	25053643	Wu D., Shen H., Yokawa K., Balu?ka F.	Alleviation of aluminium-induced cell rigidity by overexpression of OsPIN2 in rice roots.	J. Exp. Bot.	65(18)	5305-15	2014		
40520	24841874	Liu C.W., Chang T.S., Hsu Y.K., Wang A.Z., Yen H.C., Wu Y.P., Wang C.S., Lai C.C.	Comparative proteomic analysis of early salt stress responsive proteins in roots and leaves of rice.	Proteomics	14(15)	1759-75	2014		
40521	24995697	Han X., Yang Y., Wang X., Zhou J., Zhang W., Yu C., Cheng C., Cheng Y., Yan C., Chen J.	Quantitative trait Loci mapping for bacterial blight resistance in rice using bulked segregant analysis.	Int J Mol Sci	15(7)	11847-61	2014		
40522	24798002	Yang X., Wu D., Shi J., He Y., Pinot F., Grausem B., Yin C., Zhu L., Chen M., Luo Z., Liang W., Zhang D.	Rice CYP703A3, a cytochrome P450 hydroxylase, is essential for development of anther cuticle and pollen exine.	J Integr Plant Biol	56(10)	979-94	2014	CYP703A3	OsCYP703A3
40523	24996032	Smith S.M., Li J.	Signalling and responses to strigolactones and karrikins.	Curr. Opin. Plant Biol.	21C	23-29	2014		
40524	25219308	Xie G., Sasaki K., Imai R., Xie D.	A redox-sensitive cysteine residue regulates the kinase activities of OsMPK3 and OsMPK6 in vitro.	Plant Sci.	227	69-75	2014		
40525	25136671	Wu W., Wan X., Shah F., Fahad S., Huang J.	The role of antioxidant enzymes in adaptive responses to sheath blight infestation under different fertilization rates and hill densities.	ScientificWorldJournal	2014	502134	2014		
40526	25061741	Ahmad F., Huang X., Lan H.X., Huma T., Bao Y.M., Huang J., Zhang H.S.	Comprehensive gene expression analysis of the DNA (cytosine-5) methyltransferase family in rice (Oryza sativa L.).	Genet. Mol. Res.	13(3)	5159-72	2014		
40527	25071811	Li N., Li Y.	Ubiquitin-mediated control of seed size in plants.	Front Plant Sci	5	332	2014		
40528	25096046	Mainiero S., Pawlowski W.P.	Meiotic chromosome structure and function in plants.	Cytogenet. Genome Res.	143(1-3)	6-17	2014		
40529	24870048	Kobayashi T., Yamamoto K., Suetsugu Y., Kuwazaki S., Hattori M., Jairin J., Sanada-Morimura S., Matsumura M.	Genetic mapping of the rice resistance-breaking gene of the brown planthopper Nilaparvata lugens.	Proc. Biol. Sci.	281(1787)		2014		
40530	25026554	Yu C., Wang L., Chen C., He C., Hu J., Zhu Y., Huang W.	Protoplast: a more efficient system to study nucleo-cytoplasmic interactions.	Biochem. Biophys. Res. Commun.	450(4)	1575-80	2014		
40531	25320465	Ali M.N., Yeasmin L., Gantait S., Goswami R., Chakraborty S.	Screening of rice landraces for salinity tolerance at seedling stage through morphological and molecular markers.	Physiol Mol Biol Plants	20(4)	411-23	2014		
40532	24987012	Zhang J., Ku L.X., Han Z.P., Guo S.L., Liu H.J., Zhang Z.Z., Cao L.R., Cui X.J., Chen Y.H.	The ZmCLA4 gene in the qLA4-1 QTL controls leaf angle in maize (Zea mays L.).	J. Exp. Bot.	65(17)	5063-76	2014		
40533	24985700	Kong X., Zhang M., Xu X., Li X., Li C., Ding Z.	System analysis of microRNAs in the development and aluminium stress responses of the maize root system.	Plant Biotechnol. J.	12(8)	1108-21	2014		
40534	25033935	Akagi A., Fukushima S., Okada K., Jiang C.J., Yoshida R., Nakayama A., Shimono M., Sugano S., Yamane H., Takatsuji H.	WRKY45-dependent priming of diterpenoid phytoalexin biosynthesis in rice and the role of cytokinin in triggering the reaction.	Plant Mol. Biol.	86(1-2)	171-83	2014		
40535	25034643	Simmonds J., Scott P., Leverington-Waite M., Turner A.S., Brinton J., Korzun V., Snape J., Uauy C.	Identification and independent validation of a stable yield and thousand grain weight QTL on chromosome 6A of hexaploid wheat (Triticum aestivum L.).	BMC Plant Biol.	14	191	2014		
40536	25023387	Singh A.A., Agrawal S.B., Shahi J.P., Agrawal M.	Investigating the response of tropical maize (Zea mays L.) cultivars against elevated levels of O3 at two developmental stages.	Ecotoxicology	23(8)	1447-63	2014		
40537	25055794	Ji S.H., Gururani M.A., Chun S.C.	Expression analysis of rice pathogenesis-related proteins involved in stress response and endophytic colonization properties of gfp-tagged Bacillus subtilis CB-R05.	Appl. Biochem. Biotechnol.	174(1)	231-41	2014		
40538	25064847	Lu J., Li J., Ju H., Liu X., Erb M., Wang X., Lou Y.	Contrasting Effects of Ethylene Biosynthesis on Induced Plant Resistance against a Chewing and a Piercing-Sucking Herbivore in Rice.	Mol Plant			2014		
40539	25002224	Ogo Y., Takahashi H., Wang S., Takaiwa F.	Generation mechanism of novel, huge protein bodies containing wild type or hypoallergenic derivatives of birch pollen allergen Bet v 1 in rice endosperm.	Plant Mol. Biol.	86(1-2)	111-23	2014		
40540	24783971	Zhang J., Zhao Y., Xiao H., Zheng Y., Yue B.	Genome-wide identification, evolution, and expression analysis of RNA-binding glycine-rich protein family in maize.	J Integr Plant Biol	56(10)	1020-31	2014		
40541	25046853	He J., Ren Y., Chen X., Chen H.	Protective roles of nitric oxide on seed germination and seedling growth of rice (Oryza sativa L.) under cadmium stress.	Ecotoxicol. Environ. Saf.	108	114-9	2014		
40542	24985886	Kumar A., Singh R.P., Singh P.K., Awasthi S., Chakrabarty D., Trivedi P.K., Tripathi R.D.	Selenium ameliorates arsenic induced oxidative stress through modulation of antioxidant enzymes and thiols in rice (Oryza sativa L.).	Ecotoxicology	23(7)	1153-63	2014		
40543	25067834	Lu Z.B., Liu Y.E., Han N.S., Tian J.C., Peng Y.F., Hu C., Guo Y.Y., Ye G.Y.	Transgenic cry1C or cry2A rice has no adverse impacts on the life-table parameters and population dynamics of the brown planthopper, Nilaparvata lugens (Hemiptera: Delphacidae).	Pest Manag. Sci.			2014		
40544	25056418	Huang T.L., Huang L.Y., Fu S.F., Trinh N.N., Huang H.J.	Genomic profiling of rice roots with short- and long-term chromium stress.	Plant Mol. Biol.	86(1-2)	157-70	2014		
40545	25040350	Shen G., Hu W., Zhang B., Xing Y.	The regulatory network mediated by circadian clock genes is related to heterosis in rice.	J Integr Plant Biol			2014		
40546	25003197	Xu Q., Xu X., Shi Y., Xu J., Huang B.	Transgenic tobacco plants overexpressing a grass PpEXP1 gene exhibit enhanced tolerance to heat stress.	PLoS ONE	9(7)	e100792	2014		
40547	25040333	McGrann G.R., Steed A., Burt C., Goddard R., Lachaux C., Bansal A., Corbitt M., Gorniak K., Nicholson P., Brown J.K.	Contribution of the drought tolerance-related Stress-responsive NAC1 transcription factor to resistance of barley to Ramularia leaf spot.	Mol. Plant Pathol.			2014		
40548	25048298	Shri M., Dave R., Diwedi S., Shukla D., Kesari R., Tripathi R.D., Trivedi P.K., Chakrabarty D.	Heterologous expression of Ceratophyllum demersum phytochelatin synthase, CdPCS1, in rice leads to lower arsenic accumulation in grain.	Sci Rep	4	5784	2014		
40549	25047236	Tyler A.M., Bhandari D.G., Poole M., Napier J.A., Jones H.D., Lu C., Lycett G.W.	Gluten quality of bread wheat is associated with activity of RabD GTPases.	Plant Biotechnol. J.			2014		
40550	24320720	Mitani-Ueno N., Ogai H., Yamaji N., Ma J.F.	Physiological and molecular characterization of Si uptake in wild rice species.	Physiol Plant	151(3)	200-7	2014		
40551	25061821	Liu T., Wook Kim D., Niitsu M., Berberich T., Kusano T.	POLYAMINE OXIDASE 1 from rice (Oryza sativa) is a functional ortholog of Arabidopsis POLYAMINE OXIDASE 5.	Plant Signal Behav	9		2014		
40552	25110688	Basu S., Roychoudhury A.	Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.	Biomed Res Int	2014	706890	2014		
40553	25026190	Wang X., Chen X., Xu J., Wang P., Shen W.	Multiplex event-specific qualitative polymerase chain reaction for detecting three transgenic rice lines and application of a standard plasmid as a quantitative reference molecule.	Anal. Biochem.	464	1-8	2014		
40554	25024433	C?sari S., Kanzaki H., Fujiwara T., Bernoux M., Chalvon V., Kawano Y., Shimamoto K., Dodds P., Terauchi R., Kroj T.	The NB-LRR proteins RGA4 and RGA5 interact functionally and physically to confer disease resistance.	EMBO J.	33(17)	1941-59	2014		
40555	24905498	Lao J., Oikawa A., Bromley J.R., McInerney P., Suttangkakul A., Smith-Moritz AM., Plahar H., Chiu T.Y., Gonz?lez Fern?ndez-Ni?o SM., Ebert B., Yang F., Christiansen K.M., Hansen S.F., Stonebloom S., Adams P.D., Ronald P.C., Hillson N.J., Hadi M.Z., Vega-S?nchez ME., Loqu? D., Scheller H.V., Heazlewood J.L.	The plant glycosyltransferase clone collection for functional genomics.	Plant J.	79(3)	517-29	2014		
40556	25062529	Hayatsu M., Suzuki S., Hasegawa A., Tsuchiya S., Sasamoto H.	Effect of NaCl on ionic content and distribution in suspension-cultured cells of the halophyte Sonneratia alba versus the glycophyte Oryza sativa.	J. Plant Physiol.	171(15)	1385-91	2014		
40557	25052585	Peng T., Sun H., Qiao M., Zhao Y., Du Y., Zhang J., Li J., Tang G., Zhao Q.	Differentially expressed microRNA cohorts in seed development may contribute to poor grain filling of inferior spikelets in rice.	BMC Plant Biol.	14(1)	196	2014		
40558	24988301	Zhu C., Ming C., Zhao-shi X., Lian-cheng L., Xue-ping C., You-zhi M.	Characteristics and expression patterns of the aldehyde dehydrogenase (ALDH) gene superfamily of foxtail millet (Setaria italica L.).	PLoS ONE	9(7)	e101136	2014		
40559	25063863	Nitcher R., Pearce S., Tranquilli G., Zhang X., Dubcovsky J.	Effect of the hope FT-B1 allele on wheat heading time and yield components.	J. Hered.	105(5)	666-75			
40560	25054628	Anderson O.D.	The spectrum of major seed storage genes and proteins in oats (Avena sativa).	PLoS ONE	9(7)	e83569	2014		
40561	25024277	Tada Y., Komatsubara S., Kurusu T.	Growth and physiological adaptation of whole plants and cultured cells from a halophyte turf grass under salt stress.	AoB Plants	6		2014		
40562	25006358	Kim H., Jeong E.G., Ahn S.N., Doyle J., Singh N., Greenberg A.J., Won Y.J., McCouch S.R.	Nuclear and chloroplast diversity and phenotypic distribution of rice (Oryza sativa L.) germplasm from the democratic people's republic of Korea (DPRK; North Korea).	Rice (N Y)	7(1)	7	2014		
40563	24988911	Arai-Sanoh Y., Takai T., Yoshinaga S., Nakano H., Kojima M., Sakakibara H., Kondo M., Uga Y.	Deep rooting conferred by DEEPER ROOTING 1 enhances rice yield in paddy fields.	Sci Rep	4	5563	2014		
40564	25071222	Asai H., Abe N., Matsushima R., Crofts N., Oitome N.F., Nakamura Y., Fujita N.	Deficiencies in both Starch synthase IIIa and branching enzyme IIb lead to a significant increase in amylose in SSIIa-inactive japonica rice seeds.	J. Exp. Bot.	65(18)	5497-507	2014	SBE3,FLO5,ALK	SBEIII*, SBEIII, Sbe3, RBE3, QEIIa, QEIIA, BEIIb, BEIIB, SBEIIb, OsBEIIb, sbe3, SBE III, OsSBEIIb, SBEIIb,OsSSIIIa, SSIII-2, OsSSIII-2, OsSS3A, SS3A, SS3a, OsSSSIIIa, SSIIIa, Flo5,alk, SSII-3, OsSSIIa, OsSSII-3, SSIIa, SSS2A, OsSSIIaChr6, SS2a
40565	25056242	Kusaba M., Mochida T., Naridomi T., Fujita Y., Chuma I., Tosa Y.	Loss of a 1.6 Mb chromosome in Pyricularia oryzae harboring two alleles of AvrPik leads to acquisition of virulence to rice cultivars containing resistance alleles at the Pik locus.	Curr. Genet.	60(4)	315-25	2014		
40566	25016378	Das B., Sengupta S., Prasad M., Ghose T.K.	Genetic diversity of the conserved motifs of six bacterial leaf blight resistance genes in a set of rice landraces.	BMC Genet.	15	82	2014		
40567	25076167	Tamura Y., Hattori M., Yoshioka H., Yoshioka M., Takahashi A., Wu J., Sentoku N., Yasui H.	Map-based cloning and characterization of a brown planthopper resistance gene BPH26 from Oryza sativa L. ssp. indica cultivar ADR52.	Sci Rep	4	5872	2014	BPH9	Bph9, BPH9/26, Bph26(t), BPH26, Bph18(t), BPH18
40568	25059596	Aitken K.S., McNeil M.D., Berkman P.J., Hermann S., Kilian A., Bundock P.C., Li J.	Comparative mapping in the Poaceae family reveals translocations in the complex polyploid genome of sugarcane.	BMC Plant Biol.	14	190	2014		
40569	24987959	Hirano K., Okuno A., Hobo T., Ordonio R., Shinozaki Y., Asano K., Kitano H., Matsuoka M.	Utilization of stiff culm trait of rice smos1 mutant for increased lodging resistance.	PLoS ONE	9(7)	e96009	2014		
40570	24989432	Iizuka M., Wakasa Y., Tsuboi H., Asashima H., Hirota T., Kondo Y., Matsumoto I., Takaiwa F., Sumida T.	Suppression of collagen-induced arthritis by oral administration of transgenic rice seeds expressing altered peptide ligands of type II collagen.	Plant Biotechnol. J.	12(8)	1143-52	2014		
40571	25095703	Chen G., Zhu J., Zhou J., Subburaj S., Zhang M., Han C., Hao P., Li X., Yan Y.	Dynamic development of starch granules and the regulation of starch biosynthesis in Brachypodium distachyon: comparison with common wheat and Aegilops peregrina.	BMC Plant Biol.	14	198	2014		
40572	25041515	Shiono K., Ando M., Nishiuchi S., Takahashi H., Watanabe K., Nakamura M., Matsuo Y., Yasuno N., Yamanouchi U., Fujimoto M., Takanashi H., Ranathunge K., Franke R.B., Shitan N., Nishizawa N.K., Takamure I., Yano M., Tsutsumi N., Schreiber L., Yazaki K., Nakazono M., Kato K.	RCN1/OsABCG5, an ATP-binding cassette (ABC) transporter, is required for hypodermal suberization of roots in rice (Oryza sativa).	Plant J.	80(1)	40-51	2014		
40573	25099285	Tan S., Han R., Li P., Yang G., Li S., Zhang P., Wang W.B., Zhao W.Z., Yin L.P.	Over-expression of the MxIRT1 gene increases iron and zinc content in rice seeds.	Transgenic Res.			2014		
40574	25103896	Sun C., Chen D., Fang J., Wang P., Deng X., Chu C.	Understanding the genetic and epigenetic architecture in complex network of rice flowering pathways.	Protein Cell			2014		
40575	25091740	Jung M., Shin Y.J., Kim J., Cha S.B., Lee W.J., Shin M.K., Shin S.W., Yang M.S., Jang Y.S., Kwon T.H., Yoo H.S.	Induction of immune responses in mice and pigs by oral administration of classical swine fever virus E2 protein expressed in rice calli.	Arch. Virol.	159(12)	3219-30	2014		
40576	25320467	Mallick S., Kumar N., Sinha S., Dubey A.K., Tripathi R.D., Srivastav V.	H2O2 pretreated rice seedlings specifically reduces arsenate not arsenite: difference in nutrient uptake and antioxidant defense response in a contrasting pair of rice cultivars.	Physiol Mol Biol Plants	20(4)	435-47	2014		
40577	25126953	Cardoso C., Charnikhova T., Jamil M., Delaux P.M., Verstappen F., Amini M., Lauressergues D., Ruyter-Spira C., Bouwmeester H.	Differential activity of Striga hermonthica seed germination stimulants and Gigaspora rosea hyphal branching factors in rice and their contribution to underground communication.	PLoS ONE	9(8)	e104201	2014		
40578	25187932	LI Y., Gu M., Zhang X., Zhang J., Fan H., Li P., Li Z., Xu G.	Engineering a sensitive visual-tracking reporter system for real-time monitoring phosphorus deficiency in tobacco.	Plant Biotechnol. J.	12(6)	674-84	2014		
40579	25124680	Mirzajani F., Askari H., Hamzelou S., Schober Y., R?mpp A., Ghassempour A., Spengler B.	Proteomics study of silver nanoparticles toxicity on Oryza sativa L.	Ecotoxicol. Environ. Saf.	108	335-9	2014		
40580	25164029	Mostofa M.G., Hossain M.A., Fujita M.	Trehalose pretreatment induces salt tolerance in rice (Oryza sativa L.) seedlings: oxidative damage and co-induction of antioxidant defense and glyoxalase systems.	Protoplasma			2014		
40581	25138437	Wu L., Guan Y., Wu Z., Yang K., Lv J., Converse R., Huang Y., Mao J., Zhao Y., Wang Z., Min H., Kan D., Zhang Y.	OsABCG15 encodes a membrane protein that plays an important role in anther cuticle and pollen exine formation in rice.	Plant Cell Rep.	33(11)	1881-99	2014	ABCG15	OsABCG15, PDA, PDA1, OsABCG15/PDA1
40582	25104551	Leroux B.M., Goodyke A.J., Schumacher K.I., Abbott C.P., Clore A.M., Yadegari R., Larkins B.A., Dannenhoffer J.M.	Maize early endosperm growth and development: from fertilization through cell type differentiation.	Am. J. Bot.	101(8)	1259-74	2014		
40583	25039887	Byeon Y., Lee H.Y., Lee K., Back K.	Caffeic acid O-methyltransferase is involved in the synthesis of melatonin by methylating N-acetylserotonin in Arabidopsis.	J. Pineal Res.	57(2)	219-27	2014		
40584	25111047	Devanna N.B., Vijayan J., Sharma T.R.	The blast resistance gene Pi54of cloned from Oryza officinalis interacts with AVR-Pi54 through its novel non-LRR domains.	PLoS ONE	9(8)	e104840	2014		
40585	25149369	Zuo J., Li J.	Molecular Genetic Dissection of Quantitative Trait Loci Regulating Rice grain size.	Annu. Rev. Genet.			2014		
40586	25081486	Wang H., Zhang L., Cai Q., Hu Y., Jin Z., Zhao X., Fan W., Huang Q., Luo Z., Chen M., Zhang D., Yuan Z.	OsMADS32 interacts with PI-like proteins and regulates rice flower development.	J Integr Plant Biol			2014		
40587	25047511	Nie Y., Huang F., Dong S., Li L., Gao P., Zhao H., Wang Y., Han S.	Identification of inositol 1,4,5-trisphosphate-binding proteins by heparin-agarose affinity purification and LTQ ORBITRAP MS in Oryza sativa.	Proteomics	14(20)	2335-8	2014		
40588	25118653	Chauhan R., Jasrai Y., Pandya H.	In silico analysis for five major cereal crops phytocystatins.	Interdiscip Sci			2014		
40589	24742074	Wu W., Wang L., Zhang S., Li Z., Zhang Y., Lin F., Pan Q.	Stepwise arms race between AvrPik and Pik alleles in the rice blast pathosystem.	Mol. Plant Microbe Interact.	27(8)	759-69	2014		
40590	25122453	Yang S., Murphy R.L., Morishige D.T., Klein P.E., Rooney W.L., Mullet J.E.	Sorghum phytochrome B inhibits flowering in long days by activating expression of SbPRR37 and SbGHD7, repressors of SbEHD1, SbCN8 and SbCN12.	PLoS ONE	9(8)	e105352	2014		
40591	25121640	Babiker E.M., Gordon T., Jackson E., Chao S., Harrison S., Carson M., Obert D., Bonman J.M.	Quantitative trait loci from two genotypes of oat (Avena sativa L.) conditioning resistance to Puccinia coronata.	Phytopathology			2014		
40592	25098420	Christoff A.P., Margis R.	The diversity of rice phytocystatins.	Mol. Genet. Genomics			2014		
40593	25093982	Hasegawa M., Mitsuhara I., Seo S., Okada K., Yamane H., Iwai T., Ohashi Y.	Analysis on blast fungus-responsive characters of a flavonoid phytoalexin sakuranetin; accumulation in infected rice leaves, antifungal activity and detoxification by fungus.	Molecules	19(8)	11404-18	2014		
40594	25128291	Misyura M., Guevara D., Subedi S., Hudson D., McNicholas P.D., Colasanti J., Rothstein S.J.	Nitrogen limitation and high density responses in rice suggest a role for ethylene under high density stress.	BMC Genomics	15	681	2014		
40595	25238657	Van Hove J., Stefanowicz K., De Schutter K., Eggermont L., Lannoo N., Al Atalah B., Van Damme EJ.	Transcriptional profiling of the lectin ArathEULS3 from Arabidopsis thaliana toward abiotic stresses.	J. Plant Physiol.	171(18)	1763-1773	2014		
40596	25145641	Gould B., McCouch S., Geber M.	Variation in soil aluminium tolerance genes is associated with local adaptation to soils at the Park Grass Experiment.	Mol. Ecol.			2014		
40597	23956237	Xu H.X., He X.C., Zheng X.S., Yang Y.J., Lu Z.X.	Influence of rice black streaked dwarf virus on the ecological fitness of non-vector planthopper Nilaparvata lugens (Hemiptera: Delphacidae).	Insect Science	21(4)	507-14	2014		
40598	25122473	Burgos N.R., Singh V., Tseng T.M., Black H., Young N.D., Huang Z., Hyma K.E., Gealy D.R., Caicedo A.L.	The impact of herbicide-resistant rice technology on phenotypic diversity and population structure of United States weedy rice.	Plant Physiol.	166(3)	1208-20	2014		
40599	25140876	Yu C., Su S., Xu Y., Zhao Y., Yan A., Huang L., Ali I., Gan Y.	The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.	PLoS ONE	9(8)	e105597	2014		
40600	25189236	Divya B., Biswas A., Robin S., Rabindran R., Joel A.J.	Gene interactions and genetics of blast resistance and yield attributes in rice (Oryza sativa L.).	J. Genet.	93(2)	415-24	2014	PI33,PIKH,PIZ,PI1	Pi33(t), RMg70, Pi-33(t), Pi-33, Pi33,Pi-kh, Pi k-h, Pi54, Pi54rh, Pi-k(h), Pik-h, Pikh,Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2,Pi1, Pi-1, Pi1-5C, Pi1-6C
40601	25161881	Onda Y., Kobori Y.	Differential activity of rice protein disulfide isomerase family members for disulfide bond formation and reduction.	FEBS Open Bio	4	730-4	2014		
40602	25168932	Alam M.M., Tanaka T., Nakamura H., Ichikawa H., Kobayashi K., Yaeno T., Yamaoka N., Shimomoto K., Takayama K., Nishina H., Nishiguchi M.	Overexpression of a rice Heme activator protein gene (OsHAP2E) confers resistance to pathogens, salinity and drought, and increases photosynthesis and tiller number.	Plant Biotechnol. J.			2014		
40603	25189234	Kulkarni K.P., Vishwakarma C., Sahoo S.P., Lima J.M., Nath M., Dokku P., Gacche R.N., Mohapatra T., Robin S., Sarla N., Seshashayee M., Singh A.K., Singh K., Singh N.K., Sharma R.P.	A substitution mutation in OsCCD7 cosegregates with dwarf and increased tillering phenotype in rice.	J. Genet.	93(2)	389-401	2014		
40604	25073727	Qu G., Quan S., Mondol P., Xu J., Zhang D., Shi J.	Comparative metabolomic analysis of wild type and MADS3 mutant rice anthers.	J Integr Plant Biol	56(9)	849-63	2014		
40605	25157260	Kusumi K., Iba K.	Establishment of the chloroplast genetic system in rice during early leaf development and at low temperatures.	Front Plant Sci	5	386	2014	V3,ST1,V2,V1	v3, RNRL1, rnrl1, RNR1, RNRL, Osv3, OsRNRL1, OsRNR1, OsRNRL,st1(ws1), ws1, st1, OsST1, RNRS1, OsRNRS1, rnrs1, RNRS, SDL/RNRS1, SDL, OsSDL, NSL2, OsNSL2,v2, mGmk, GMK, Gmk, pt/mtGK, pt/mt GK, OsV2, OsGMK,v1, NUS1,OsV1, OsNUS1
40606	25219318	Nada R.M., Abogadallah G.M.	Aquaporins are major determinants of water use efficiency of rice plants in the field.	Plant Sci.	227	165-80	2014		
40607	25142326	Feng Z., Zhang L., Yang C., Wu T., Lv J., Chen Y., Liu X., Liu S., Jiang L., Wan J.	EF8 is involved in photoperiodic flowering pathway and chlorophyll biogenesis in rice.	Plant Cell Rep.			2014		
40608	25141278	He X., Xu H., Gao G., Zhou X., Zheng X., Sun Y., Yang Y., Tian J., Lu Z.	Virus-mediated chemical changes in rice plants impact the relationship between non-vector planthopper Nilaparvata lugens St?l and its egg parasitoid Anagrus nilaparvatae Pang et Wang.	PLoS ONE	9(8)	e105373	2014		
40609	25177324	Balzan S., Johal G.S., Carraro N.	The role of auxin transporters in monocots development.	Front Plant Sci	5	393	2014		
40610	25138576	Wang X., Jin D., Wang Z., Guo H., Zhang L., Wang L., Li J., Paterson A.H.	Telomere-centric genome repatterning determines recurring chromosome number reductions during the evolution of eukaryotes.	New Phytol.			2014		
40611	25047395	Kim J.Y., Wu J., Kwon S.J., Oh H., Lee S.E., Kim S.G., Wang Y., Agrawal G.K., Rakwal R., Kang K.Y., Ahn I.P., Kim B.G., Kim S.T.	Proteomics of rice and Cochliobolus miyabeanus fungal interaction: Insight into proteins at intracellular and extracellular spaces.	Proteomics	14(20)	2307-18	2014		
40612	25151634	Singh P., Shah K.	Evidences for reduced metal-uptake and membrane injury upon application of nitric oxide donor in cadmium stressed rice seedlings.	Plant Physiol. Biochem.	83	180-4	2014		
40613	25109872	Lv W., Du B., Shangguan X., Zhao Y., Pan Y., Zhu L., He Y., He G.	BAC and RNA sequencing reveal the brown planthopper resistance gene BPH15 in a recombination cold spot that mediates a unique defense mechanism.	BMC Genomics	15	674	2014		
40614	24782137	E ZG., Zhang Y.P., Zhou J.H., Wang L.	Mini review roles of the bZIP gene family in rice.	Genet. Mol. Res.	13(2)	3025-36	2014		
40615	24974324	Al Atalah B., De Vleesschauwer D., Xu J., Fouquaert E., H?fte M., Van Damme EJ.	Transcriptional behavior of EUL-related rice lectins toward important abiotic and biotic stresses.	J. Plant Physiol.	171(12)	986-92	2014		
40616	24698809	Zhou M., Luo H.	Role of microRNA319 in creeping bentgrass salinity and drought stress response.	Plant Signal Behav	9	e28700	2014		
40617	24780313	Yu Q., Feilke K., Krieger-Liszkay A., Beyer P.	Functional and molecular characterization of plastid terminal oxidase from rice (Oryza sativa).	Biochim. Biophys. Acta	1837(8)	1284-92	2014		
40618	24754628	Quain M.D., Makgopa M.E., M?rquez-Garc?a B., Comadira G., Fernandez-Garcia N., Olmos E., Schnaubelt D., Kunert K.J., Foyer C.H.	Ectopic phytocystatin expression leads to enhanced drought stress tolerance in soybean (Glycine max) and Arabidopsis thaliana through effects on strigolactone pathways and can also result in improved seed traits.	Plant Biotechnol. J.	12(7)	903-13	2014		
40619	24771021	Zhao H., Huai Z., Xiao Y., Wang X., Yu J., Ding G., Peng J.	Natural variation and genetic analysis of the tiller angle gene MsTAC1 in Miscanthus sinensis.	Planta	240(1)	161-75	2014		
40620	25011296	Ji L., Li T.X., Zhang X.Z., Yu H.Y., Zheng Z.C.	[Characteristics of distribution and transportation of rice genotype with high nitrogen utilization efficiency at the late growth stage].	Ying Yong Sheng Tai Xue Bao	25(4)	1036-42	2014		
40621	24740395	Wang X., Li Y., Fang G., Zhao Q., Zeng Q., Li X., Gong H., Li Y.	Nitrite promotes the growth and decreases the lignin content of indica rice calli: a comprehensive transcriptome analysis of nitrite-responsive genes during in vitro culture of rice.	PLoS ONE	9(4)	e95105	2014		
40622	24746721	Gorantla J.N., Kumar S.N., Nisha G.V., Sumandu A.S., Dileep C., Sudaresan A., Kumar M.M., Lankalapalli R.S., Kumar B.S.	Purification and characterization of antifungal phenazines from a fluorescent Pseudomonas strain FPO4 against medically important fungi.	J Mycol Med	24(3)	185-92	2014		
40623	24721692	Zwickl D.J., Stein J.C., Wing R.A., Ware D., Sanderson M.J.	Disentangling methodological and biological sources of gene tree discordance on Oryza (Poaceae) chromosome 3.	Syst. Biol.	63(5)	645-59	2014		
40624	24832615	Li Z., Zhang Y., Liu L., Liu Q., Bi Z., Yu N., Cheng S., Cao L.	Fine mapping of the lesion mimic and early senescence 1 (lmes1) in rice (Oryza sativa).	Plant Physiol. Biochem.	80	300-7	2014		
40625	24723407	Yang H., Zhang X., Gaxiola R.A., Xu G., Peer W.A., Murphy A.S.	Over-expression of the Arabidopsis proton-pyrophosphatase AVP1 enhances transplant survival, root mass, and fruit development under limiting phosphorus conditions.	J. Exp. Bot.	65(12)	3045-53	2014		
40626	24771344	Lertampaiporn S., Thammarongtham C., Nukoolkit C., Kaewkamnerdpong B., Ruengjitchatchawalya M.	Identification of non-coding RNAs with a new composite feature in the Hybrid Random Forest Ensemble algorithm.	Nucleic Acids Res.	42(11)	e93	2014		
40627	24786093	Zhu K., Min C., Xia H., Yang Y., Wang B., Chen K.	Characterisation of Indica Special Protein (ISP), a marker protein for the differentiation of Oryza sativa subspecies indica and japonica.	Int J Mol Sci	15(5)	7332-43	2014		
40628	25079420	Pan W., Wu C., Xue S., Hartley W.	Arsenic dynamics in the rhizosphere and its sequestration on rice roots as affected by root oxidation.	J Environ Sci (China)	26(4)	892-9	2014		
40629	24722991	Nomura Y., Izumi A., Fukunaga Y., Kusumi K., Iba K., Watanabe S., Nakahira Y., Weber A.P., Nozawa A., Tozawa Y.	Diversity in guanosine 3',5'-bisdiphosphate (ppGpp) sensitivity among guanylate kinases of bacteria and plants.	J. Biol. Chem.	289(22)	15631-41	2014		
40630	24766995	Peng B., Wang L., Fan C., Jiang G., Luo L., Li Y., He Y.	Comparative mapping of chalkiness components in rice using five populations across two environments.	BMC Genet.	15	49	2014		
40631	24711357	Wang Y.Y., Wei Y.Y., Dong L.X., Lu L.L., Feng Y., Zhang J., Pan F.S., Yang X.E.	Improved yield and Zn accumulation for rice grain by Zn fertilization and optimized water management.	J Zhejiang Univ Sci B	15(4)	365-74	2014		
40632	24720629	Zhu Y., Wu N., Song W., Yin G., Qin Y., Yan Y., Hu Y.	Soybean (Glycine max) expansin gene superfamily origins: segmental and tandem duplication events followed by divergent selection among subfamilies.	BMC Plant Biol.	14	93	2014		
40633	24706213	Yoshida S., Morita T., Shinozaki Y., Watanabe T., Sameshima-Yamashita Y., Koitabashi M., Kitamoto D., Kitamoto H.	Mannosylerythritol lipids secreted by phyllosphere yeast Pseudozyma antarctica is associated with its filamentous growth and propagation on plant surfaces.	Appl. Microbiol. Biotechnol.	98(14)	6419-29	2014		
40634	24744320	Yang H., Zhang Z., Yan R., Wang Y., Zhu D.	Draft Genome Sequence of Streptomyces sp. Strain PRh5, a Novel Endophytic Actinomycete Isolated from Dongxiang Wild Rice Root.	Genome Announc	2(2)		2014		
40635	24696519	Crowell S., Falc?o AX., Shah A., Wilson Z., Greenberg A.J., McCouch S.R.	High-Resolution Inflorescence Phenotyping Using a Novel Image-Analysis Pipeline, PANorama.	Plant Physiol.	165(2)	479-495	2014		
40636	24717398	Salem E.G., El Hissewy A., Agamy N.F., Abd El Barry D.	Assessment of the quality of bran and bran oil produced from some Egyptian rice varieties.	J Egypt Public Health Assoc	89(1)	29-34	2014		
40637	24915087	Wang W., Ma Y., Suo Y., Yan L., Zhang D., Miao C.	Crystallization and preliminary crystallographic analysis of defective pollen wall (DPW) protein from Oryza sativa.	Acta Crystallogr F Struct Biol Commun	70(Pt 6)	758-60	2014		
40638	24907524	Lucas J.A., Garc?a-Cristobal J., Bonilla A., Ramos B., Gutierrez-Ma?ero J.	Beneficial rhizobacteria from rice rhizosphere confers high protection against biotic and abiotic stress inducing systemic resistance in rice seedlings.	Plant Physiol. Biochem.	82	44-53	2014		
40639	24884676	Wang Y., Lin S., Song Q., Li K., Tao H., Huang J., Chen X., Que S., He H.	Genome-wide identification of heat shock proteins (Hsps) and Hsp interactors in rice: Hsp70s as a case study.	BMC Genomics	15	344	2014		
40640	24852592	Wu Y., Zhang W., Jiang J.	Genome-wide nucleosome positioning is orchestrated by genomic regions associated with DNase I hypersensitivity in rice.	PLoS Genet.	10(5)	e1004378	2014		
40641	24800811	Xu T., Gu L., Choi M.J., Kim R.J., Suh M.C., Kang H.	Comparative functional analysis of wheat (Triticum aestivum) zinc finger-containing glycine-rich RNA-binding proteins in response to abiotic stresses.	PLoS ONE	9(5)	e96877	2014		
40642	24793751	Han C., Wang K., Yang P.	Gel-based comparative phosphoproteomic analysis on rice embryo during germination.	Plant Cell Physiol.	55(8)	1376-94	2014		
40643	25055689	Tan L.M., Wu H., Li H., Zhou P., Li K.L., Wang J.R., Ge T.D., Yuan H.Z., Wu J.S.	[Input and distribution of rice photosynthesized carbon in the tillering stage under different nitrogen application following continuous 13C labeling].	Huan Jing Ke Xue	35(5)	1933-8	2014		
40644	24885077	Zhao K., Bartley L.E.	Comparative genomic analysis of the R2R3 MYB secondary cell wall regulators of Arabidopsis, poplar, rice, maize, and switchgrass.	BMC Plant Biol.	14	135	2014		
40645	24816929	Oono Y., Yazawa T., Kawahara Y., Kanamori H., Kobayashi F., Sasaki H., Mori S., Wu J., Handa H., Itoh T., Matsumoto T.	Genome-wide transcriptome analysis reveals that cadmium stress signaling controls the expression of genes in drought stress signal pathways in rice.	PLoS ONE	9(5)	e96946	2014		
40646	24854982	Zhang H., Zhang J., Wei P., Zhang B., Gou F., Feng Z., Mao Y., Yang L., Zhang H., Xu N., Zhu J.K.	The CRISPR/Cas9 system produces specific and homozygous targeted gene editing in rice in one generation.	Plant Biotechnol. J.	12(6)	797-807	2014		
40647	24895563	Puteh A.B., Mondal M.M., Ismail M.R., Latif M.A.	Grain sterility in relation to dry mass production and distribution in rice (Oryza sativa L.).	Biomed Res Int	2014	302179	2014		
40648	24822269	Luzzatto-Knaan T., Kerem Z., Doron-Faigenboim A., Yedidia I.	Priming of protein expression in the defence response of Zantedeschia aethiopica to Pectobacterium carotovorum.	Mol. Plant Pathol.	15(4)	364-78	2014		
40649	24810734	Concia A.L., G?mez L., Parella T., Joglar J., Clap?s P.	Casuarine stereoisomers from achiral substrates: chemoenzymatic synthesis and inhibitory properties.	J. Org. Chem.	79(11)	5386-9	2014		
40650	25036129	Nomura Y., Nozawa A., Tozawa Y.	Biochemical analyses of ppGpp effect on adenylosuccinate synthetases, key enzymes in purine biosynthesis in rice.	Biosci. Biotechnol. Biochem.	78(6)	1022-5	2014		
40651	24884531	Spence C., Alff E., Johnson C., Ramos C., Donofrio N., Sundaresan V., Bais H.	Natural rice rhizospheric microbes suppress rice blast infections.	BMC Plant Biol.	14	130	2014		
40652	24843076	Lam P.Y., Zhu F.Y., Chan W.L., Liu H., Lo C.	Cytochrome P450 93G1 Is a Flavone Synthase II That Channels Flavanones to the Biosynthesis of Tricin O-Linked Conjugates in Rice.	Plant Physiol.	165(3)	1315-1327	2014	CYP93G1,CYP93F1	OsCYP93G1, OsFNSII, FNSII, OsCYP71S4, CYP71S4,OsCYP93F1, OsCYP71AB11, CYP71AB11
40653	24885990	Sandhu N., Singh A., Dixit S., Sta Cruz MT., Maturan P.C., Jain R.K., Kumar A.	Identification and mapping of stable QTL with main and epistasis effect on rice grain yield under upland drought stress.	BMC Genet.	15	63	2014		
40654	24976122	Liu Y., Fang J., Xu F., Chu J., Yan C., Schl?ppi MR., Wang Y., Chu C.	Expression patterns of ABA and GA metabolism genes and hormone levels during rice seed development and imbibition: a comparison of dormant and non-dormant rice cultivars.	J Genet Genomics	41(6)	327-38	2014		
40655	24874118	Sahoo R.K., Ansari M.W., Pradhan M., Dangar T.K., Mohanty S., Tuteja N.	A novel Azotobacter vinellandii (SRIAz 3) functions in salinity stress tolerance in rice.	Plant Signal Behav	9		2014		
40656	25017169	Yang L., Kawakatsu T., Wakasa Y., Yoine M., Takaiwa F.	RNA silencing is induced by the expression of foreign recombinant products in transgenic rice.	Plant Sci.	225	138-46	2014		
40657	25130735	Zhang Z., Chen X., Guan X., Liu Y., Chen H., Wang T., Mouekouba L.D., Li J., Wang A.	A genome-wide survey of homeodomain-leucine zipper genes and analysis of cold-responsive HD-Zip I members' expression in tomato.	Biosci. Biotechnol. Biochem.	78(8)	1337-49	2014		
40658	25209506	Tabara A., Oneda H., Murayama R., Matsui Y., Hirano A., Seguchi M.	Determination of hydrophobicity of dry-heated wheat starch granules using sucrose fatty acid esters (SFAE).	Biosci. Biotechnol. Biochem.	78(9)	1572-6	2014		
40659	24937154	Datta K., Sahoo G., Krishnan S., Ganguly M., Datta S.K.	Genetic stability developed for beta-carotene synthesis in BR29 rice line using dihaploid homozygosity.	PLoS ONE	9(6)	e100212	2014		
40660	24928872	Han L., Han C., Liu Z., Chen F., Jurat-Fuentes JL., Hou M., Peng Y.	Binding site concentration explains the differential susceptibility of Chilo suppressalis and Sesamia inferens to Cry1A-producing rice.	Appl. Environ. Microbiol.	80(16)	5134-40	2014		
40661	24987303	Mo Y.J., Jeung J.U., Shin W.C., Kim K.Y., Ye C., Redo?a ED., Kim B.K.	Effects of allelic variations in starch synthesis-related genes on grain quality traits of Korean nonglutinous rice varieties under different temperature conditions.	Breed. Sci.	64(2)	164-75	2014		
40662	24931499	M?ller AH., Sawicki A., Zhou S., Tabrizi S.T., Luo M., Hansson M., Willows R.D.	Inducing the oxidative stress response in Escherichia coli improves the quality of a recombinant protein: magnesium chelatase ChlH.	Protein Expr. Purif.	101	61-7	2014		
40663	24941328	Grosskinsky D.K., van der Graaff E., Roitsch T.	Abscisic acid-cytokinin antagonism modulates resistance against Pseudomonas syringae in tobacco.	Phytopathology			2014		
40664	25018764	Cantos C., Francisco P., Trijatmiko K.R., Slamet-Loedin I., Chadha-Mohanty PK.	Identification of "safe harbor" loci in indica rice genome by harnessing the property of zinc-finger nucleases to induce DNA damage and repair.	Front Plant Sci	5	302	2014		
40665	25110136	Aver'yanov AA., Lapikova V.P., Pasechnik T.D., Abramova O.S., Gaivoronskaya L.M., Kuznetsov V.V., Baker C.J.	Pre-illumination of rice blast conidia induces tolerance to subsequent oxidative stress.	Fungal Biol	118(8)	743-53	2014		
40666	24913626	Shiono K., Yamauchi T., Yamazaki S., Mohanty B., Malik A.I., Nagamura Y., Nishizawa N.K., Tsutsumi N., Colmer T.D., Nakazono M.	Microarray analysis of laser-microdissected tissues indicates the biosynthesis of suberin in the outer part of roots during formation of a barrier to radial oxygen loss in rice (Oryza sativa).	J. Exp. Bot.	65(17)	4795-806	2014		
40667	25071406	Xu X., Zhang L., Liu B., Ye Y., Wu Y.	Characterization and mapping of a spotted leaf mutant in rice (Oryza sativa).	Genet. Mol. Biol.	37(2)	406-13	2014	_	SPL30
40668	24928870	Bao Z., Okubo T., Kubota K., Kasahara Y., Tsurumaru H., Anda M., Ikeda S., Minamisawa K.	Metaproteomic identification of diazotrophic methanotrophs and their localization in root tissues of field-grown rice plants.	Appl. Environ. Microbiol.	80(16)	5043-52	2014		
40669	25036124	Ochiai A., Sugai H., Harada K., Tanaka S., Ishiyama Y., Ito K., Tanaka T., Uchiumi T., Taniguchi M., Mitsui T.	Crystal structure of alpha-amylase from Oryza sativa: molecular insights into enzyme activity and thermostability.	Biosci. Biotechnol. Biochem.	78(6)	989-97	2014		
40670	24987489	Satoh K., Saji S., Ito S., Shimizu H., Saji H., Kikuchi S.	Gene response in rice plants treated with continuous fog influenced by pH, was similar to that treated with biotic stress.	Rice (N Y)	7(1)	10	2014		
40671	24960559	Wu Z., Ge S.	The whole chloroplast genome of wild rice (Oryza australiensis).	Mitochondrial DNA		1-2	2014		
40672	24949743	Gaikwad K.B., Singh N., Bhatia D., Kaur R., Bains N.S., Bharaj T.S., Singh K.	Yield-enhancing heterotic QTL transferred from wild species to cultivated rice Oryza sativa L.	PLoS ONE	9(6)	e96939	2014		
40673	24968225	Li W.Y., Wang X., Li R., Li W.Q., Chen K.M.	Genome-wide analysis of the NADK gene family in plants.	PLoS ONE	9(6)	e101051	2014		
40674	24926322	Liu Y., Yang G.	Tc1-like transposable elements in plant genomes.	Mob DNA	5	17	2014		
40675	24905454	Midorikawa K., Kuroda M., Terauchi K., Hoshi M., Ikenaga S., Ishimaru Y., Abe K., Asakura T.	Additional nitrogen fertilization at heading time of rice down-regulates cellulose synthesis in seed endosperm.	PLoS ONE	9(6)	e98738	2014		
40676	24987299	Maeda H., Yamaguchi T., Omoteno M., Takarada T., Fujita K., Murata K., Iyama Y., Kojima Y., Morikawa M., Ozaki H., Mukaino N., Kidani Y., Ebitani T.	Genetic dissection of black grain rice by the development of a near isogenic line.	Breed. Sci.	64(2)	134-41	2014	GL1D,_,B2	OsMyb3, OSMYB3, MYB3, OsGL1D, OsMYB46, MYB46, Kala3, OsKala3, SMG3, OsSMG3, Os2R_MYB39, 2R_MYB39,Kala1,OsbHLH016, Kala4, OsKala4, OSB2, OsB2
40677	24915771	Muthamilarasan M., Bonthala V.S., Mishra A.K., Khandelwal R., Khan Y., Roy R., Prasad M.	C2H2 type of zinc finger transcription factors in foxtail millet define response to abiotic stresses.	Funct. Integr. Genomics	14(3)	531-43	2014		
40678	24948834	Ohnishi Y., Hoshino R., Okamoto T.	Dynamics of Male and Female Chromatin during Karyogamy in Rice Zygotes.	Plant Physiol.	165(4)	1533-1543	2014		
40679	24894389	Lakshmanan M., Mohanty B., Lim S.H., Ha S.H., Lee D.Y.	Metabolic and transcriptional regulatory mechanisms underlying the anoxic adaptation of rice coleoptile.	AoB Plants	6		2014		
40680	25070039	Ghosh S., Gupta S.K., Jha G.	Identification and functional analysis of AG1-IA specific genes of Rhizoctonia solani.	Curr. Genet.	60(4)	327-41	2014		
40681	25056480	Chen M., Zhang C., Zi Q., Qiu D., Liu W., Zeng H.	A novel elicitor identified from Magnaporthe oryzae triggers defense responses in tobacco and rice.	Plant Cell Rep.	33(11)	1865-79	2014		
40682	25273131	Iizuka M., Wakasa Y., Tsuboi H., Asashima H., Hirota T., Kondo Y., Matsumoto I., Sumida T., Takaiwa F.	Prophylactic effect of the oral administration of transgenic rice seeds containing altered peptide ligands of type II collagen on rheumatoid arthritis.	Biosci. Biotechnol. Biochem.	78(10)	1662-8	2014		
40683	25255563	Gong J., Cao X., Cao Z., Bian Y., Yu S., Chen M.	[Determination of five arsenic species in rice by liquid chromatography-inductively coupled plasma-mass spectrometry].	Se Pu	32(7)	717-22	2014		
40684	25027708	Nguyen N.L., So K.K., Kim J.M., Kim S.H., Jang Y.S., Yang M.S., Kim D.H.	Expression and characterization of an M cell-specific ligand-fused dengue virus tetravalent epitope using Saccharomyces cerevisiae.	J. Biosci. Bioeng.			2014		
40685	25104955	Collado-Romero M., Al?s E., Prieto P.	Unravelling the proteomic profile of rice meiocytes during early meiosis.	Front Plant Sci	5	356	2014		
40686	25058577	Dong M., Gu J., Zhang L., Chen P., Liu T., Deng J., Lu H., Han L., Zhao B.	Comparative proteomics analysis of superior and inferior spikelets in hybrid rice during grain filling and response of inferior spikelets to drought stress using isobaric tags for relative and absolute quantification.	J Proteomics	109C	382-399	2014		
40687	25036388	Czarnecki O., Yang J., Wang X., Wang S., Muchero W., Tuskan G.A., Chen J.G.	Characterization of MORE AXILLARY GROWTH genes in Populus.	PLoS ONE	9(7)	e102757	2014		
40688	25320466	Etesami H., Mirseyed Hosseini H., Alikhani H.A.	Bacterial biosynthesis of 1-aminocyclopropane-1-caboxylate (ACC) deaminase, a useful trait to elongation and endophytic colonization of the roots of rice under constant flooded conditions.	Physiol Mol Biol Plants	20(4)	425-34	2014		
40689	25187684	Singha H.S., Chakraborty S., Deka H.	Stress induced MAPK genes show distinct pattern of codon usage in Arabidopsis thaliana, Glycine max and Oryza sativa.	Bioinformation	10(7)	436-42	2014		
40690	25048445	Li Y.L., Dai X.R., Yue X., Gao X.Q., Zhang X.S.	Identification of small secreted peptides (SSPs) in maize and expression analysis of partial SSP genes in reproductive tissues.	Planta	240(4)	713-28	2014		
40691	25345046	Li L., Zhang X.Z., Li T.X., Yu H.Y., Ji L., Chen G.D.	[Characteristics of phosphorus uptake and use efficiency of rice with high yield and high phosphorus use efficiency].	Ying Yong Sheng Tai Xue Bao	25(7)	1963-70	2014		
40692	25084557	Li X., Qiao J., Yang L., Li X., Qiao S., Pang X., Tian F., Chen H., He C.	Mutation of alkyl hydroperoxide reductase gene AhpC of Xanthomonas oryzae pv. oryzae affects hydrogen peroxide accumulation during the rice-pathogen interaction.	Res. Microbiol.			2014		
40693	25015319	Rastogi S., Meena S., Bhattacharya A., Ghosh S., Shukla R.K., Sangwan N.S., Lal R.K., Gupta M.M., Lavania U.C., Gupta V., Nagegowda D.A., Shasany A.K.	De novo sequencing and comparative analysis of holy and sweet basil transcriptomes.	BMC Genomics	15	588	2014		
40694	25074414	Xu M., Shi N., Li Q., Mi H.	An active supercomplex of NADPH dehydrogenase mediated cyclic electron flow around Photosystem I from the panicle chloroplast of Oryza sativa.	Acta Biochim. Biophys. Sin. (Shanghai)	46(9)	757-65	2014		
40695	25056987	Delos D., Leineweber M.J., Chaudhury S., Alzoobaee S., Gao Y., Rodeo S.A.	The effect of platelet-rich plasma on muscle contusion healing in a rat model.	Am J Sports Med	42(9)	2067-74	2014		
40696	24923534	Li X.J., Zhang Y.F., Hou M., Sun F., Shen Y., Xiu Z.H., Wang X., Chen Z.L., Sun S.S., Small I., Tan B.C.	Small kernel 1 encodes a pentatricopeptide repeat protein required for mitochondrial NAD7 transcript editing and seed development in maize (Zea mays) and rice (Oryza sativa).	Plant J.	79(5)	797-809	2014	NAD7,SMK1	nad7,Os_SMK1
40697	25023870	Wong D.C., Sweetman C., Ford C.M.	Annotation of gene function in citrus using gene expression information and co-expression networks.	BMC Plant Biol.	14	186	2014		
40698	25042427	Qin X., Zhang R., Zhang J., Shi Y.	Physiological efects of paichongding applied to rice on the Nilaparvata lugens (St? l), the brown planthopper.	Arch. Insect Biochem. Physiol.	87(2)	72-84	2014		
40699	25014054	Yang Y., Liu Y., Cao F., Chen X., Cheng L., Romeis J., Li Y., Peng Y.	Consumption of Bt rice pollen containing Cry1C or Cry2A protein poses a low to negligible risk to the silkworm Bombyx mori (Lepidoptera: Bombyxidae).	PLoS ONE	9(7)	e102302	2014		
40700	25037078	Kim J.G., Back K., Lee H.Y., Lee H.J., Phung T.H., Grimm B., Jung S.	Increased expression of Fe-chelatase leads to increased metabolic flux into heme and confers protection against photodynamically induced oxidative stress.	Plant Mol. Biol.	86(3)	271-87	2014		
40701	25039271	Sousa R.H., Carvalho F.E., Ribeiro C.W., Passaia G., Cunha J.R., Lima-Melo Y., Margis-Pinheiro M., Silveira J.A.	Peroxisomal APX knockdown triggers antioxidant mechanisms favourable for coping with high photorespiratory H2 O2 induced by CAT deficiency in rice.	Plant Cell Environ.			2014	APX4	OsAPx4, OsAPx04, OSAPX4, APx4, pAPX4
40702	24985701	Phelix C.F., Feltus F.A.	Plant stress biomarkers from biosimulations: the Transcriptome-To-Metabolome(?) (TTM(?) ) technology - effects of drought stress on rice.	Plant Biol (Stuttg)			2014		
40703	25096975	Etemadi M., Gutjahr C., Couzigou J.M., Zouine M., Lauressergues D., Timmers A., Audran C., Bouzayen M., B?card G., Combier J.P.	Auxin perception is required for arbuscule development in arbuscular mycorrhizal symbiosis.	Plant Physiol.	166(1)	281-92	2014		
40704	25104001	Filiz E., Tombulo?lu H.	In Silico Analysis of DREB Transcription Factor Genes and Proteins in Grasses.	Appl. Biochem. Biotechnol.	174(4)	1272-85	2014		
40705	25100144	Ma J., Jiang Q.T., Wei L., Yang Q., Zhang X.W., Peng Y.Y., Chen G.Y., Wei Y.M., Liu C., Zheng Y.L.	Conserved structure and varied expression reveal key roles of phosphoglucan phosphatase gene starch excess 4 in barley.	Planta			2014		
40706	25149470	Zhang H., Wu Q., Cao S., Zhao T., Chen L., Zhuang P., Zhou X., Gao Z.	A novel protein elicitor (SsCut) from Sclerotinia sclerotiorum induces multiple defense responses in plants.	Plant Mol. Biol.	86(4-5)	495-511	2014		
40707	25157851	Singh U.M., Chandra M., Shankhdhar S.C., Kumar A.	Transcriptome wide identification and validation of calcium sensor gene family in the developing spikes of finger millet genotypes for elucidating its role in grain calcium accumulation.	PLoS ONE	9(8)	e103963	2014		
40708	25133580	Geng Y., Pang B., Hao C., Tang S., Zhang X., Li T.	Expression of wheat high molecular weight glutenin subunit 1Bx is affected by large insertions and deletions located in the upstream flanking sequences.	PLoS ONE	9(8)	e105363	2014		
40709	25162680	Zhou T., Gao C., Du L., Feng H., Wang L., Lan Y., Sun F., Wei L., Fan Y., Shen W., Zhou Y.	Genetic analysis and QTL detection for resistance to white tip disease in rice.	PLoS ONE	9(8)	e106099	2014		
40710	25122481	Rajeswaran R., Golyaev V., Seguin J., Zvereva A., Farinelli L., Pooggin M.	Interactions of rice tungro bacilliform pararetrovirus and its protein P4 with plant RNA silencing machinery.	Mol. Plant Microbe Interact.			2014		
40711	25093500	Uraji M., Arima J., Inoue Y., Harazono K., Hatanaka T.	Application of two newly identified and characterized feruloyl esterases from Streptomyces sp. in the enzymatic production of ferulic acid from agricultural biomass.	PLoS ONE	9(8)	e104584	2014		
40712	25168432	Zanin L., Tomasi N., Wirdnam C., Meier S., Komarova N.Y., Mimmo T., Cesco S., Rentsch D., Pinton R.	Isolation and functional characterization of a high affinity urea transporter from roots of Zea mays.	BMC Plant Biol.	14	222	2014		
40713	25129550	Christeller J.T., Galis I.	alpha-linolenic acid concentration and not wounding per se is the key regulator of octadecanoid (oxylipin) pathway activity in rice (Oryza sativa L.) leaves.	Plant Physiol. Biochem.	83	117-25	2014		
40714	25137124	Lindquist E., Alezzawi M., Aronsson H.	Bioinformatic indications that COPI- and clathrin-based transport systems are not present in chloroplasts: an Arabidopsis model.	PLoS ONE	9(8)	e104423	2014		
40715	25129148	Wang J.M., Chen X.P., Liang Y.Y., Zhu H.J., Ding J.T., Peng Y.F.	Influence of transgenic rice expressing a fused cry1Ab/1Ac protein on frogs in paddy fields.	Ecotoxicology	23(9)	1619-28	2014		
40716	25258710	Nadarajah K., Omar N.S., Rosli M.M., Shin Tze O.	Molecular Characterization and Screening for Sheath Blight Resistance Using Malaysian Isolates of Rhizoctonia solani.	Biomed Res Int	2014	434257	2014		
40717	25105299	Li G., Wang Y., Liu B., Zhang G.	Transgenic Bacillus thuringiensis (Bt) rice is safer to aquatic ecosystems than its non-transgenic counterpart.	PLoS ONE	9(8)	e104270	2014		
40718	25338392	Lei M., Zeng M., Liao B.H., Hu L.Q., Zhou H., Long S.B.	[Effects of phosphorus-containing substances on arsenic uptake by rice].	Huan Jing Ke Xue	35(8)	3149-54	2014		
40719	25143195	Martini L.F., Burgos N.R., Noldin J.A., de Avila LA., Salas R.A.	Absorption, translocation and metabolism of bispyribac-sodium on rice seedlings under cold stress.	Pest Manag. Sci.			2014		
40720	25111805	Chen S., Wang D., Xu C., Ji C., Zhang X., Zhao X., Zhang X., Chauhan B.S.	Responses of super rice (Oryza sativa L.) to different planting methods for grain yield and nitrogen-use efficiency in the single cropping season.	PLoS ONE	9(8)	e104950	2014		
40721	25132047	Turan S., Tripathy B.C.	Salt-stress induced modulation of chlorophyll biosynthesis during de-etiolation of rice seedlings.	Physiol Plant			2014		
40722	25150455	Ma R., Shen J., Wu J., Tang Z., Shen Q., Zhao F.J.	Impact of agronomic practices on arsenic accumulation and speciation in rice grain.	Environ. Pollut.	194	217-23	2014		
40723	20825577	Chen N., Xu Y., Wang X., Cheng D.U., Jizhou D.U., Yuan M., Xu Z., Chong K.	OsRAN2, essential for mitosis, enhances cold tolerance in rice by promoting export of intranuclear tubulin and maintaining cell division under cold stress.	Plant Cell Environ.	34(1)	52-64	2011	RAN2	OsRAN2
40724	11910009	Asano T., Kunieda N., Omura Y., Ibe H., Kawasaki T., Takano M., Sato M., Furuhashi H., Mujin T., Takaiwa F., Chuan-yin Wu Cy, Tada Y., Satozawa T., Sakamoto M., Shimada H.	Rice SPK, a calmodulin-like domain protein kinase, is required for storage product accumulation during seed development: phosphorylation of sucrose synthase is a possible factor.	Plant Cell	14(3)	619-28	2002	RSUS2,RSUS1,SPK,RSUS3	sus2, RSus2(t), SUS2, SS1, OsScS1, RSs1, RSus2, OsSUS2, RSS1, RSus1, OsSusy2, Susy2, OsRSUS1, RSUS1,sus1, RSus1(t), SUS1, SS2, OsScS2, RSs2, RSus1, SuSy1, OsSUS1, RSS2, RSus2, OsRSUS1,CDPK 1, CDPK1, CDPK23, OsCDPK23, OsCPK23, CPK23, OsSPK,RSus3(t), SUS3, SS3, OsScS3, RSs3, RSus3, OsSUS3, RSS3, OsEnS-111, Susy3, OsSusy3
40725	21167079	Wang L., Guo K., Li Y., Tu Y., Hu H., Wang B., Cui X., Peng L.	Expression profiling and integrative analysis of the CESA/CSL superfamily in rice.	BMC Plant Biol.	10	282	2010	CESA3,CSLF9,CSLE2,CSLD1,BC7,CSLC1,CSLF8,CSLC7,BC6,CSLA6,CSLC9,CSLD2,CSLH3,CSLA5,CSLC3,CSLA1,CSLA2,CSLA4,CSLH1,CESA11,CSLA3,CSLF3,CESA2,CSLH2,CSLE1,CSLF7,CSLA9,CSLA7,CESA6,CESA5,CESA7,CSLC2,CESA8,CSLF1,ND1,CSLF4,CESA10,CSLA11,CSLD5,CSLF2,CSLD3,CSLC10,CSLF6,CESA1,CSLE6	OsCesA3, OsCESA3, OS_CESA03,OsCslF9, OsCSLF9,OsCslE2, OsCSLE2 ,csld1, OsCSLD1, OsCslD1,OsCesA4, OsCESA4, CESA4, OS_CESA04, BC11, bc7t, Bc7(t), bc-7, OsCesA 4, CesA4, FC17/CESA4, FC17, OsFC17,OsCslC1, OsCSLC1,OsCslF8, OsCSLF8,OsCslC7, OsCSLC7 ,Bc6*, Bc6, OsCesA9, CESA9, OsCESA9, OS_CESA09, OsCesA 9, CesA9, BC88, SDBC1, OsSDBC1,OsCslA6, OsCSLA6,OsCslC9, OsCSLC9,OsCslD2, OsCSLD2 ,OsCslH3, OsCSLH3,OsCslA5, OsCSLA5 ,OsCslC3, OsCSLC3 ,OsCslA1, OsCSLA1 ,OsCslA2, OsCSLA2,OsCslA4, OsCSLA4 ,OsCslH1, OsCSLH1 ,OsCesA11, OsCESA11, OsCLD1, CLD1,OsCslA3, OsCSLA3 ,OsCslF3, OsCSLF3 ,OsCesA2, OsCESA2, OS_CESA02,OsCslH2, OsCSLH2 ,OsCslE1, OsCSLE1 ,OsCslF7, OsCSLF7 ,OsCslA9, OsCSLA9, OsCesA9, CesA9,OsCslA7, OsCSLA7, OsCesA7, CesA7,OsCesA6, OsCESA6, OS_CESA06,OsCesA5, OsCESA5, OS_CESA05,OsCesA7, OsCESA7, OS_CESA07, OsCesA 7, CesA7,OsCslC2, OsCSLC2 ,OsCesA8, OsCESA8, OS_CESA08, CesA8,OsCslF1, OsCSLF1 ,CSLD4, OsCSLD4, OsCD1, CD1, DNL3, OsDNL3, NRL1, OsNRL1, SPO1, OsSPO1, SPO1/OsCSLD4,OsCslF4, OsCSLF4 ,OsCesA10, OsCESA10,OsCslA11, OsCSLA11 ,OsCSLD5,OsCslF2, OsCSLF2,OsCSLD3,OsCslC10, OsCSLC10,OsCslF6, OsCSLF6, OsCLD3, CLD3,OsCesA1, OsCesA-1, OsCESA1, OS_CESA01, CesA1,OsCslE6, OsCSLE6
40726	0	Zang Y., Wang Q., Xue C., Li M., Wen R., Xiao W.	Rice ubc13, a candidate housekeeping gene, is required for K63-linked polyubiquitination and tolerance to DNA damage	Rice (N Y)	5	24-34	2012	UBC13	OsUbc13, Ubc13, OsUBC47, UBC47
40727	17689048	Pavlopoulou A., Kossida S.	Plant cytosine-5 DNA methyltransferases: structure, function, and molecular evolution.	Genomics	90(4)	530-41	2007	MET1B,MET1A	OsMET1b, OsMET1-2, MET1b, MET1,OsMET1a, OsMET1-1, MET1a, MET1-1, OsMET1, OsDMT702, DMT702
40728	23989647	Zmie?ko A.a, Samelak A.b, Koz?owski P.a, Figlerowicz M.a b	Copy number polymorphism in plant genomes	Theoretical and Applied Genetics	127	1-18	2014		
40729	0	Fujita M., Shinozaki K.	Identification of polyamine transporters in plants: Paraquat transport provides crucial clues	Plant and Cell Physiology	55	855-861	2014	PUT2,PUT1,PUT3	OsPUT2, OsLAT7 ,OsPUT1, PUT, OsLAT1 ,OsPUT3, OsPUT3.1, OsPAR1, OsLAT5 
40730	0	Lim S.D.a, Lee C.b, Jang C.S.a	The rice RING E3 ligase, OsCTR1, inhibits trafficking to the chloroplasts of OsCP12 and OsRP1, and its overexpression confers drought tolerance in Arabidopsis	Plant, Cell and Environment	37	1097-1113	2014		
40731	0	Jo H.J., Kong J.N., Lim J.K., Kong K.H.	Site-directed mutagenesis of evolutionarily conserved serine residues in the N-terminal domain of rice Phi-class glutathione S-transferase F5	Journal of Molecular Catalysis B: Enzymatic	106	71-75	2014	GSTF5	OsGSTF5, OsGST F5
40732	0	Moon J.C.a b, Ham D.J.a, Hwang S.G.a, Park Y.C.a, Lee C.c, Jang C.S.a	Molecular characterization of a heat inducible rice gene, OsHSP1, and implications for rice thermotolerance	Genes and Genomics	36	151-161	2014		
40733	0	Park S.H.a, Lim H.b, Hyun S.J.b, Yun D.W.b, Yoon U.H.b, Ji H.b, Kim T.H.b, Eun M.Y.c, Kim Y.H.d, Lee G.S.b	Wound-inducible expression of the OsDof1 gene promoter in a Ds insertion mutant and transgenic plants	Plant Biotechnol Rep	8	305-313	2014	RDD2	OsDof23, Dof23, OsDof-23, OsDof1, OsCDF3, CDF3, OsDof24, Dof24
40734	0	Akter M.B.a b, Piao R.a, Kim B.a, Lee Y.a, Koh E.a, Koh H.J.a	Fine mapping and candidate gene analysis of a new mutant gene for panicle apical abortion in rice	Euphytica	197	387-398	2014	LMPA	OSA7, OsA7, osAHA7, AHA7, PAA-Hwa, OsLMPA
40735	0	Lee S.a c, Jia M.H.b, Jia Y.b, Liu G.a d	Tagging quantitative trait loci for heading date and plant height in important breeding parents of rice (Oryza sativa)	Euphytica	197	191-200	2014		
40736	0	Yang D.W.a, Zheng X.H.a, Cheng C.P.a, Wang W.D.b, Xing D.H.c, Lu L.B.a, Liu C.D.a, Ye N.a, Zeng M.J.a, Ye X.F.a	A dwarfing mutant caused by deactivation function of alpha subunit of the heterotrimeric G-protein in rice	Euphytica	197	145-159	2014	D1	d1, GPA1, GA1, OsGA1, RGA1, dwf1, XA7, RGA, D1/RGA1, D89, TGW5, OsTGW5, SRG5, OsSRG5
40737	0	B?langer S.a, Gauthier M.a, Jean M.a, Sato K.b, Belzile F.a	Genomic characterization of the Hordeum vulgare DEP1 (HvDEP1) gene and its diversity in a collection of barley accessions	Euphytica	198	29-41	2014		
40738	0	Kashiwagi T.	Identification of quantitative trait loci for resistance to bending-type lodging in rice (Oryza sativa L.)	Euphytica	198	353-367	2014		
40739	0	Cingel A.a, Savi? J.a, ?osi? T.a, Zdravkovi?-Kora? S.a, Mom?ilovi? I.a, Smigocki A.b, Ninkovi? S.a	Pyramiding rice cystatin OCI and OCII genes in transgenic potato (Solanum tuberosum L.) for resistance to Colorado potato beetle (Leptinotarsa decemlineata Say)	Euphytica	198	425-438	2014	OC1,OC2	Oc1*, Oc1, OC-I, SPOC-I, OsCP1, Oc, OCI, OsCYS1, OsPR6b, PR6b,Oc2*, Oc2, OC-II, OC-III, OCII, OsCYS2
40740	0	Zhou X.a b, Jenks M.A.c, Liu J.a, Liu A.a b, Zhang X.a b, Xiang J.a, Zou J.a, Peng Y.a, Chen X.a b	Overexpression of Transcription Factor OsWR2 Regulates Wax and Cutin Biosynthesis in Rice and Enhances its Tolerance to Water Deficit	Plant Molecular Biology Reporter	32	719-731	2014	CYP86A7-1,FDH2,KCR1,ERF1,CER10,LACS9,_,_,ERF3,_,FAE1,CYP86A7-3,CYP86A7-2,WSL1,_,HMS1,_,KCS1	CYP86A7-1, OsCYP86A7-1,OsFDH2,OsKCR1, OsWSL3, WSL3,Os06ERF, OsWR2, WR2, OsERF#001, OsERF001, OsERF1, AP2/EREBP#057, AP2/EREBP57, RD1, OsSHN, SHN,OsCER10,OsLACS1, LACS1, OsLACS9,GPDH2, OsGPDH1-2,GPDH1, OsGPDH1-1,Os02ERF, OsSHN1, OsWR1, WR1, OsERF#003, OsERF003, OsERF3, AP2/EREBP#012, AP2/EREBP12,OsGL1-7, CER2, CER1, OsCER1, OsCER2,OsCHS, FAE, OsFAE1, OsKCS14, KCS14,CYP86A7-3, OsCYP86A7-3,CYP86A7-2, OsCYP86A7-2,OsWSL1, FAE', OsFAE1', OsCER6, CER6, OsKCS17, KCS17,FATB1, OsFATB1,CER6/CUT1, CER6, CUT1, OsCER6, WSL4, KCS6, OsKCS6, CER6/CUT1/KCS6, OsHMS1, OsKCS8, KCS8,MAH1, OsMAH1, OsCYP96B3, CYP96B3,OsKCS1, OsKCS13, KCS13
40741	24927545	Bao Y.a b c, Aggarwal P.b, Robbins II N.E.a d, Sturrock C.J.e, Thompson M.C.e, Tan H.Q.b, Tham C.b, Duan L.a, Rodriguez P.L.f, Vernoux T.g, Mooney S.J.e, Bennett M.J.e h, Dinneny J.R.a b c	Plant roots use a patterning mechanism to position lateral root branches toward available water	Proc. Natl. Acad. Sci. U.S.A.	111	9319-9324	2014		
40742	24753598	Doust A.N.a, Lukens L.b, Olsen K.M.c, Mauro-Herrera M.a, Meyer A.b, Rogers K.a	Beyond the single gene: How epistasis and gene-byenvironment effects influence crop domestication	Proc. Natl. Acad. Sci. U.S.A.	111	6178-6183	2014		
40743	25034662	Priya R., Siva R.	Phylogenetic analysis and evolutionary studies of plant carotenoid cleavage dioxygenase gene	Gene	548	223-233	2014	CCD8A,CCD1,D10,D17,CCD8D	OsCCD8a, OsCCD8c, CCD8a, CCD8c,OsCCD1,d10(d15,d16), d16, d15, dwf9, d10, OsCCD8b, OsCCD8, CCD8, OsD10,d17(t), dwf14, d17, htd1, OsCCD7, CCD7, D17/HTD1, HTD1, OsHTD1, OsD17,OsCCD8d, ZAS-L1, OsZAS-L1, OsZAS1b, ZAS1b, OsCCD8c, CCD8c 
40744	0	Pachecoy M.I.a b, Ramirez I.A.a c, Marin A.b, Pontaroli A.C.a d	Assessment of cold tolerance at early developmental stages and allelic variation at candidate genes in South American rice germplasm	Euphytica	197	423-434	2014	GSTZ1,GSTZ2,CDPK13	OsGSTZ1, GSTZ-1,OsGSTZ2, GSTZ-2,OsCDPK13, OsCPK13, OsCDPK7, CDPK7, OsCPK13-1, OsCPK13-2
40745	0	Baltazar M.D.a b, Ignacio J.C.I.a, Thomson M.J.a, Ismail A.M.a, Mendioro M.S.b, Septiningsih E.M.a	QTL mapping for tolerance of anaerobic germination from IR64 and the aus landrace Nanhi using SNP genotyping	Euphytica	197	251-260	2014		
40746	24622186	Tollefson J.	Energy: Islands of light	Nature	507	154-156	2014		
40747	0	Nguyen H.T.T.a c, Van Pham C.b, Bertin P.c	The effect of nitrogen concentration on nitrogen use efficiency and related parameters in cultivated rices (Oryza sativa L. subsp. indica and japonica and O. glaberrima Steud.) in hydroponics	Euphytica	198	137-151	2014		
40748	25035499	Marcussen T.a, Sandve S.R.a, Heier L.b, Spannagl M.c, Pfeifer M.c, Jakobsen K.S.d, Wulff B.B.H.e, Steuernagel B.e, Mayer K.F.X.c, Olsen O.A.a	Ancient hybridizations among the ancestral genomes of bread wheat	Science	345		2014		
40749	0	Kushwaha H.R.a, Singla-Pareek S.L.b, Pareek A.c	Putative osmosensor-OsHK3b-a histidine kinase protein from rice shows high structural conservation with its ortholog AtHK1 from Arabidopsis	Journal of Biomolecular Structure and Dynamics	32	1318-1332	2014		
40750	0	Kamrul Huda K.M., Akhter Banu M.S., Yadav S., Sahoo R.K., Tuteja R., Tuteja N.	Salinity and drought tolerant OsACA6 enhances cold tolerance in transgenic tobacco by interacting with stress-inducible proteins	Plant Physiology and Biochemistry	82	229-238	2014	DOF27,PI21,HIPP52,ACA11,DIR16,HD16,_,WRKY79,_,_,_,_,_,UBC	OsDof27, Dof27, OsDof-27, OsDof28, Dof28,pi21, rMg40, OsHMP26, HMP26, OsHIPP5, HIPP5, OsaHIP05, HIP05 ,OsHMP46, HMP46, OsHIPP52, OsaHIP52, HIP52 ,osACA11, OsACA6, OsACA5, OsPM4ATP8,OsDIR16, OsjDIR16,Hd16, EL1, CK1, Hd16/CKI, Hd16/EL1,CBP-LIKE,OsWRKY79, WRKY-79,,,CAMK ,,,UBC, OsUBC32, UBC32
40751	0	Kuijt S.J.H.a e, Greco R.a f, Agalou A.a, Shao J.a, 't Hoen C.C.J.a, Overnas E.b g, Osnato M.c, Curiale S.c, Meynard D.d, van Gulik R.a, Maraschin S.F.a, Atallah M.a h, de Kam R.J.a, Lamers G.E.M.a, Guiderdoni E.d, Rossini L.c, Meijer A.H.a, Ouwerkerk P.B.F.a	Interaction between the GROWTH-REGULATING FACTOR and KNOTTED1-LIKE HOMEOBOX Families of Transcription Factors	Plant Physiol.	164	1952-1966	2014		
40752	0	Khattab H.I.a, Emam M.A.b, Emam M.M.a, Helal N.M.a, Mohamed M.R.b	Effect of selenium and silicon on transcription factors NAC5 and DREB2A involved in drought-responsive gene expression in rice	Biol. Plant.	58	265-273	2014	_,RDCP1,RAB16B,DREB2A,NAC5	OsCMO,OsRDCP1,  OsRING320, RING320, OsREIW1, REIW1,rab21, OsLEA28, OsRAB16D, OsRab16d, Rab16d, OsRAB16b, XERO1, OsXERO1, OsRD22, RD22,OsDREB2A, OsDREB2a, ERF40, OsERF#040, OsERF040, OsERF40, AP2/EREBP#167, AP2/EREBP167,OsNAC5, NAC71, ONAC071, ONAC009, ONAC9, ONAC020, ONAC20, OnNAC5*, OnNAC5, OsNAC5/ONAC009
40753	0	Garcia-Morales S.a, Gomez-Merino F.C.b, Trejo-Tellez L.I.a	NAC transcription factor expression, amino acid concentration and growth of elite rice cultivars upon salt stress	Acta Physiologiae Plantarum	36	1927-1936	2014	ONAC2,NAC95,NAC28,NAC5,NAC14,NAC32,NAC121,NAC63,NAC56,NAC135,BET1,NAC104,_,NAC61,NAC122,Y37,NAC96,NAC88,NAC139,NAC6,NAC1,TIL1	SNAC1, snac1, OsNAC9, ONAC002, ONAC2, ONAC033, ONAC33, ONAC043, ONAC43, ONAC044, ONAC44, OsNAC19, NAC19, SNAC1/ONAC002, OsSNAC1, OsNAC9, OsNAC1,ONAC095, ONAC95,ONAC028, ONAC28,OsNAC5, NAC71, ONAC071, ONAC009, ONAC9, ONAC020, ONAC20, OnNAC5*, OnNAC5, OsNAC5/ONAC009,ONAC014, ONAC14, OsNAC14, NAC14, OsNAC68, NAC68,ONAC032, ONAC32, ONAC056, ONAC56,ONAC121,ONAC063, ONAC63,ONAC056, ONAC56, OsSWN5, SWN5,ONAC135,BET1, ONAC081, ONAC81, NAC81,OMTN6, ONAC104, DLN206, OsDLN206,ONAC001, ONAC1,ONAC061, ONAC61,OsNAC10, NAC10, ONAC122, NAC122, OsSNAC10, SNAC10,NAC11, ONAC011, ONAC11, OMTN4, OsY37, OsY37N, OsY37I, OsNAC1, DLN172, OsDLN172, OsNAC092, NAC092, OsNAC92, NAC92,NAC94, ONAC096, ONAC96, NAC4, OsNAC4, OsNAC94,ONAC088, ONAC88, OsNAC52, NAC52,ONAC139, OsNAM,OsNAC6, ONAC048, NAC48, SNAC2, SNAC2/OsNAC6, OsNAC6/ONAC048, OsSNAC2, SNAC-2, OsSNAC-2, OsNAC2,OsNAC1, ONAC027, ONAC27, NAC27, OMTN1, OsNAC1/ONAC027, DLN60, OsDLN60, OsORE1,NAC2, OsNAC2, ONAC004, ONAC4, ONAC034, ONAC34, ONAC058, ONAC58, OMTN2, Ostil1, OsNAC2/ONAC004, OsORE1.2, DLN113, OsDLN113
40754	0	Guglielminetti L., Volterrani M.	Effect of ethanol on the expression of two fructokinases in rice seedlings	Plant Prod. Sci.	17	305-310	2014	FKII,FKI	OsFKII, OsFK1, FK1, FRK-2, OsFRK-2, FRK2, OsFRK2,OsFKI, OsFK2, FK2
40755	0	Sperandio M.V.L.a, Santos L.A.a, de Araujo O.J.L.a, Braga R.P.a, Coelho C.P.a, de Matos Nogueira E.b, Fernandes M.S.a, de Souza S.R.c	Response of nitrate transporters and PM H+-ATPase expression to nitrogen flush on two upland rice varieties contrasting in nitrate uptake kinetics	Aust J Crop Sci	8	568-576	2014	NRT2.2,AHA2,NRT2.1,LMPA,NAR2.1	OsNRT2.2, OsNRT2.1,OSA2, OsA2, osAHA2, AHA2, OsPMA2,OsNRT2.1, OsNRT2.2,OSA7, OsA7, osAHA7, AHA7, PAA-Hwa, OsLMPA,OsNAR2.1, OsNRT3.1A
40756	0	Guevara D.R., Bi Y.M., Rothstein S.J.	Identification of regulatory genes to improve nitrogen use efficiency	Canadian Journal of Plant Science	94	1009-1012	2014	_	UDP-GT, OsENOD93-1
40757	0	Passaia G.a, Caverzan A.a b, Fonini L.S.a b, Carvalho F.E.L.c, Silveira J.A.G.c, Margis-Pinheiro M.a	Chloroplastic and mitochondrial GPX genes play a critical role in rice development	Biol. Plant.	58	375-378	2014	GPX1,GPX4	OsGpx1, GPX1, OsGPx01, OsGPX1,OsGpx4, GPX4, OsGPx04, OsGPX4
40758	0	Tsuge S.a, Furutani A.b, Ikawa Y.a	Regulatory network of hrp gene expression in Xanthomonas oryzae pv. oryzae	Journal of General Plant Pathology	80	303-313	2014		
40759	0	Socha A.L., Guerinot M.L.	Mn-euvering manganese: The role of transporter gene family members in manganese uptake and mobilization in plants	Front Plant Sci	5		2014		
40760	0	Hassanien R.H.E.a b, Hou T.Z.a c, Li Y.F.a, Li B.M.a	Advances in Effects of Sound Waves on Plants	Journal of Integrative Agriculture	13	335-348	2014		
40761	0	Tanaka Y.a, Kumagai E.b, Tazoe Y.c d, Adachi S.e f, Homma K.a	Leaf photosynthesis and its genetic improvement from the perspective of energy flow and CO2 diffusion	Plant Prod. Sci.	17	111-123	2014		
40762	0	He H.J.a b c, Zhang D.Q.a b c, Tang L.d, Yang D.b c	Recent advance on biological function and signal pathway of Receptor-like cytoplasmic kinase in plants	Zhiwu Shengli Xuebao/Plant Physiology Journal	50	885-890	2014		
40763	0	Mirouze M.a, Vitte C.b	Transposable elements, a treasure trove to decipher epigenetic variation: insights from Arabidopsis and crop epigenomes	J. Exp. Bot.	65	2801-2812	2014		
40764	0	Singh M.K., Prasad S.K.	Agronomic aspects of zinc biofortification in rice (Oryza sativa l.)	Proceedings of the National Academy of Sciences India Section B - Biological Sciences	84	613-623	2014		
40765	0	Houston M.	The role of nutrition and nutritional supplements in the treatment of dyslipidemia	Clin Lipidol	9	333-354	2014		
40766	0	Nhamo N.a, Rodenburg J.a, Zenna N.a, Makombe G.a b, Luzi-Kihupi A.a c	Narrowing the rice yield GAP in east and Southern Africa: Using and adapting existing technologies	Agric Syst	131	45-55	2014		
40767	0	Ma J.F.a b, Chen Z.C.a, Shen R.F.b	Molecular mechanisms of Al tolerance in gramineous plants	Plant Soil	381	1-12	2014		
40768	0	Mongon J.a c, Konnerup D.b, Colmer T.D.b, Rerkasem B.a	Responses of rice to Fe2+ in aerated and stagnant conditions: Growth, root porosity and radial oxygen loss barrier	Functional Plant Biology	41	922-929	2014		
40769	0	Brinch-Pedersen H., Madsen C.K., Holme I.B., Dionisio G.	Increased understanding of the cereal phytase complement for better mineral bio-availability and resource management	J. Cereal Sci.	59	373-381	2014		
40770	0	Makhzoum A.a, Benyammi R.b, Moustafa K.c, Tr?mouillaux-Guiller J.d	Recent advances on host plants and expression cassettes' structure and function in plant molecular pharming	BioDrugs	28	145-159	2014		
40771	24766890	Macho A.P., Zipfel C.	Plant PRRs and the activation of innate immune signaling	Mol. Cell	54	263-272	2014		
40772	0	Kurihara-Yonemoto S.	Post-transcriptional regulation in mitochondria of rice and wheat at low temperatures	Jpn. Agric. Res. Q.	48	17-28	2014		
40773	0	Chen S.C.a, Sun G.X.a, Chen Z.a, Chen F.L.c, Zhu Y.G.a b	Progresses on selenium metabolism and interaction with heavy metals in higher plants	Zhiwu Shengli Xuebao/Plant Physiology Journal	50	612-624	2014		
40774	0	Sharma T.R.a, Das A.b, Thakur S.a, Jalali B.L.c	Recent understanding on structure, function and evolution of plant disease resistance genes	Proceedings of the Indian National Science Academy	80	83-93	2014		
40775	0	Glassop D., Rae A.L., Bonnett G.D.	Sugarcane Flowering Genes and Pathways in Relation to Vegetative Regression	Sugar Tech	16	235-240	2014		
40776	0	Kim G.Y.a, Gutierrez J.b, Jeong H.C.a, Lee J.S.a, Haque M.D.M.b, Kim P.J.b c	Effect of intermittent drainage on methane and nitrous oxide emissions under different fertilization in a temperate paddy soil during rice cultivation	Journal of the Korean Society for Applied Biological Chemistry	57	229-236	2014		
40777	0	Siddiqui Z.S.a b, Cho J.I.a, Kwon T.R.a, Ahn B.O.a, Lee K.S.a, Jeong M.J.a, Ryu T.H.a, Lee S.K.a, Park S.C.a, Park S.H.a	Physiological mechanism of drought tolerance in transgenic rice plants expressing Capsicum annuum methionine sulfoxide reductase B2 (CaMsrB2) gene	Acta Physiologiae Plantarum	36	1143-1153	2014		
40778	0	Byeon Y., Back K.	Melatonin synthesis in rice seedlings in vivo is enhanced at high temperatures and under dark conditions due to increased serotonin N-acetyltransferase and N-acetylserotonin methyltransferase activities	J. Pineal Res.	56	189-195	2014		
40779	0	Kim N.S.a, Yu H.Y.a, Chung N.D.a, Kwon T.H.b, Yang M.S.a	High-level production of recombinant trypsin in transgenic rice cell culture through utilization of an alternative carbon source and recycling system	Enzyme Microb. Technol.	63	21-27	2014		
40781	0	Il Kwon S.a b, Hwang D.J.a	Plant-specific VQ-domain proteins as interaction partners of WRKY transcription factors	Plant Genetic Resources: Characterisation and Utilisation	12	S121-S124	2014		
40782	0	Khan A.L.a, Waqas M.b, Hussain J.a, Al-Harrasi A.a, Al-Rawahi A.a, Al-Hosni K.a, Kim M.J.b, Adnan M.c, Lee I.J.b	Endophytes Aspergillus caespitosus LK12 and Phoma sp. LK13 of Moringa peregrina produce gibberellins and improve rice plant growth	J Plant Interact	9	731-737	2014		
40783	0	Kim Y.H.a, Khan A.L.b, Waqas M.a, Shim J.K.a, Kim D.H.a, Lee K.Y.a, Lee I.J.c	Silicon Application to Rice Root Zone Influenced the Phytohormonal and Antioxidant Responses Under Salinity Stress	J. Plant Growth Regul.	33	137-149	2014		
40784	0	Yeo S.M.a, Yun Y.T.b, Kim D.M.a, Chung C.T.b, Ahn S.N.a	Validation of QTLs associated with spikelets per panicle and grain weight in rice	Plant Genetic Resources: Characterisation and Utilisation	12	S151-S154	2014		
40785	0	Islam M.K.a, Islam M.S.b, Biswas J.K.c, Lee S.Y.a, Alam I.d e, Huh M.R.a e	Screening of rice varieties for direct seeding method	Aust J Crop Sci	8	536-542	2014		
40786	0	Qin Y.a, Kim S.M.a, Zhao X.a, Lee H.S.a, Jia B.b, Kim K.M.c, Eun M.Y.a, Sohn J.K.a	QTL detection and MAS selection efficiency for lipid content in brown rice (Oryza sativa L.)	Genes and Genomics	32	506-512	2014		
40787	0	Gutierrez J.a, Atulba S.L.a, Kim G.a, Kim P.J.a b	Importance of rice root oxidation potential as a regulator of CH4 production under waterlogged conditions	Biol. Fertil. Soils	50	861-868	2014		
40788	0	Kim M.J.a, Jung Y.J.a, Lee S.H.a, Lee H.b, Kim J.C.a	Kinetic analysis and enzyme concentration effect relevant to dependence of amylolysis of starch granules on specific surface area concentration	Food Sci. Biotechnol.	23	475-481	2014		
40789	0	Park H.M.a, Jeon E.J.a, Waminal N.E.a, Shin K.S.b, Kweon S.J.b, Park B.S.b, Suh S.C.b, Kim H.H.a	Detection of transgenes in three genetically modified rice lines by fluorescence in situ hybridization	Genes and Genomics	32	527-531	2014		
40790	0	Cho J.I.a, Lim H.M.a, Siddiqui Z.S.b, Park S.H.a, Kim A.R.a, Kwon T.R.a, Lee S.K.a, Park S.C.a, Jeong M.J.a, Lee G.S.a	Over-expression of PsGPD, a mushroom glyceraldehyde-3-phosphate dehydrogenase gene, enhances salt tolerance in rice plants	Biotechnol. Lett.	36	1641-1648	2014		
40791	0	Yamamoto N.a d, Kubota T.a, Masumura T.b c, Shiraishi N.a e, Tanaka K.b c, Sugimoto T.a, Oji Y.a	Molecular cloning, gene expression and functional expression of a phosphoenolpyruvate carboxylase Osppc1 in developing rice seeds: Implication of involvement in nitrogen accumulation	Seed Sci. Res.	24	23-36	2014	PPC4,PPPCB,PPC2A,PEPC1,PPC2B,PPC2	PEPC-2, Osppc4, ppc4,Osppc-b, OsSTA1, ppc-b, STA1, BTPC, OsBTPC,Osppc, OSPPC, Osppc2a, ppc2a,PEPC-1, Osppc1, ppc1,Osppc2b, ppc2b,Osppc3, Osppc2, ppc3,ppc2
40792	0	Ishikawa T.a, Kusa K.b, Suzuki Y.c	A computer program written in logo to illustrate the tillering structure of rice (Oryza sativa L.)	Japanese Journal of Crop Science	83	260-266	2014		
40793	0	Mostofa M.G.a b, Yoshida N.a, Fujita M.a	Spermidine pretreatment enhances heat tolerance in rice seedlings through modulating antioxidative and glyoxalase systems	Plant Growth Regul.	73	31-44	2014		
40794	0	Zhang L.a, Nakanishi Itai R.a, Yamakawa T.a, Nakanishi H.a, Nishizawa N.K.b, Kobayashi T.b c	The Bowman-Birk Trypsin Inhibitor IBP1 Interacts with and Prevents Degradation of IDEF1 in Rice	Plant Molecular Biology Reporter	32	841-851	2014		
40795	0	Kameoka E.	IRRI Young rice scientist conference in 2013	Japanese Journal of Crop Science	83	380-381	2014		
40796	0	Arazoe T.a, Kuwata S.a, Arie T.b, Ohsato S.a	Experimental evidence of a pathogenic change caused by homologous recombination between endogenous and introduced dysfunctional Avr-Pita genes in Pyricularia oryzae	Journal of General Plant Pathology	80	153-157	2014		
40797	0	Watanabe H.a, Saigusa M.b, Adachi Y.a, Sibuya K.c	Effects of the Inabenfide [4'-chloro-2'-(alpha-hydroxybenzyl)-isonicotinanilide] on the growth of rice grown in no tillage cultivation with single basal fertilization to the nursery box	Asian Journal of Crop Science	6	354-361	2014		
40798	0	Ishikawa-Sakurai J., Hayashi H., Murai-Hatano M.	Nitrogen availability affects hydraulic conductivity of rice roots, possibly through changes in aquaporin gene expression	Plant Soil	379	289-300	2014		
40799	0	Nunkaew T.a, Kantachote D.a b, Kanzaki H.c, Nitoda T.c, Ritchie R.J.d	Effects of 5-aminolevulinic acid (ALA)-containing supernatants from selected Rhodopseudomonas palustris strains on rice growth under NaCl stress, with mediating effects on chlorophyll, photosynthetic electron transport and antioxidative enzymes	Electronic Journal of Biotechnology	17		2014		
40800	0	Shingu Y.a, Kanno Y.b, Tokai T.b, Shibata T.a, Wakasa K.b c	A visible assay for meiotic homologous recombination in pollens of rice	Plant Biotechnology	31	55-59	2014		
40801	0	Otake R., Sasanuma T., Abe T.	Effect of endogenous hydrolytic enzymes on glucose liberation and ecotypical difference in hot-water-treated rice grains (Oryza sativa L.)	Food Sci. Technol. Res.	20	161-165	2014		
40802	0	Nozoye T.a, Nagasaka S.a c, Bashir K.a d, Takahashi M.a e, Kobayashi T.b, Nakanishi H.a, Nishizawa N.K.a b	Nicotianamine synthase 2 localizes to the vesicles of iron-deficient rice roots, and its mutation in the YXXphi or LL motif causes the disruption of vesicle formation or movement in rice	Plant Journal	77	246-260	2014	NAS2	OsNAS2, OsNAS1
40803	0	Hamaoka N.a, Ueno O.b	The effect of nitrogen application level on photosynthetic traits in the AA genome wild rice species, Oryza nivara: A comparison with the Oryza sativa japonica cultivar, Nipponbare	Japanese Journal of Crop Science	83	333-340	2014		
40804	0	Hirano T.a, Bekhasut P.b, Sommut W.b, Zungsontiporn S.c, Kondo A.a, Saka H.a, Michiyama H.a	Differences in elongation growth between floating and deepwater rice plants grown under severe flooding in Thailand	Field Crops Res.	160	73-76	2014		
40805	0	Thu T.T.P.a, Yamakawa T.b, Moe K.c	Effect of nitrogen application timing on growth, grain yield and eating quality of the KD18 and TH3-3 rice varieties	Journal of the Faculty of Agriculture, Kyushu University	59	55-64	2014		
40806	0	Ohmori Y.a b, Yasui Y.a, Hirano H.Y.a	Overexpression analysis suggests that FON2-LIKE CLE PROTEIN1 is involved in rice LEAF development	Genes and Genetic Systems	89	87-91	2014	CLE402,PNH1,DL	FCP1,OsFCP1,  FCP1/Os CLE402, Os CLE402, OsCLE402,OsPNH1,OsDL, dl(lop), lop, dl, dl1, OsDRPq3, DRPq3
40807	0	Okami M.a d, Kato Y.a, Kobayashi N.b c e, Yamagishi J.a	Agronomic performance of an IR64 introgression line with large leaves derived from New Plant Type rice in aerobic culture	European Journal of Agronomy	58	11-17	2014		
40808	0	Chiba M.a, Terao T.b	Open-top chambers with solar-heated air introduction tunnels for the high-temperature treatment of Paddy fields	Plant Prod. Sci.	17	152-165	2014		
40809	0	Obara M.a, Ishimaru T.a b, Abiko T.a, Fujita D.b d, Kobayashi N.c, Yanagihara S.a, Fukuta Y.a e	Identification and characterization of quantitative trait loci for root elongation by using introgression lines with genetic background of Indica-type rice variety IR64	Plant Biotechnol Rep	8	267-277	2014		
40810	0	Inthavong T.a, Fukai S.b, Tsubo M.c	Estimation of separate effects of water and nutrient limitation for rainfed lowland rice within a province in the Mekong region	Field Crops Res.	163	100-108	2014		
40811	0	Leaungthitikanchana S.a, Tanaka M.a, Lordkaew S.b, Jamjod S.c, Rerkasem B.c, Fujiwara T.a	Comparison of BOR1-like gene expression in two genotypes with different boron efficiencies in commercial crop plants in Thailand	Soil Sci. Plant Nutr.	60	333-340	2014		
40812	0	Sato D.S.a, Ohmori Y.a b, Nagashima H.a, Toriba T.a c, Hirano H.Y.a	A role for TRIANGULAR HULL1 in fine-tuning spikelet morphogenesis in rice	Genes and Genetic Systems	89	61-69	2014	G1,BLS1,EG1	g1 (lng), lng, g1, ELE, Os ELE, OsG1, G1/ELE, LSL2, OsLSL2,OsBLS1, OsG1L6, G1L6, TH1, OsTH1, TH1/BSG1/BLS1/AFD1, BSG1, OsBSG1, AFD1, OsAFD1, BH1, OsBH1,eg1, GY1, OsEG1, OsGY1
40813	0	Hoai T.T.T.a b, Suu T.D.b, Satoh H.a, Kumamaru T.a	Diversity of glutelin acidic subunit polypeptides in rice cultivars collected from Northern Vietnam	Plant Breeding	133	341-347	2014		
40814	24395252	Hirano H.Y., Tanaka W., Toriba T.	Grass flower development	Methods in Molecular Biology	1110	57-84	2014		
40815	0	Yamamoto N.a d, Shimada M.a, Sugimoto T.a, Oji Y.a, Masumura T.b c	Dynamic protein expressions of phosphoenolpyruvate carboxylase in developing rice seeds	J. Cereal Sci.	60	457-460	2014		
40816	0	Ishimaru K., Ujiie K.	Identification of genes for rice grain size.and their function	Japanese Journal of Crop Science	83	299-304	2014		
40817	0	Kato Y.a, Katsura K.b	Rice adaptation to aerobic soils: Physiological considerations and implications for agronomy	Plant Prod. Sci.	17	1-12	2014		
40818	0	Okubo K.	Morphological evaluation of the trace of grain detachment in Japonica rice cultivars with different shattering habits	Plant Prod. Sci.	17	291-297	2014		
40819	0	Matsushita K.a b, Ishii T.a, Ideta O.a, Iida S.a, Sunohara Y.a, Maeda H.a, Watanabe H.b	Yield and lodging resistance of 'Tachiayaka', a novel rice cultivar with short panicles for whole-crop silage	Plant Prod. Sci.	17	202-206	2014		
40820	0	Matsuda H.a, Chuba M.a, Mori S.b, Fujii H.b	Effect of the change of weather conditions after 1980 in yamagata prefecture on the rice growth at maximum tiller number stage	Japanese Journal of Crop Science	83	242-248	2014		
40821	0	Horai K., Ishii A., Shimono H.	Genotypic variation in the response to high water temperature during vegetative growth and the effects on rice productivity under a cool climate	Field Crops Res.	162	12-19	2014		
40822	0	Maisuraa, Achmad Chozin M.b, Lubis I.b, Junaedi A.b, Ehara H.c	Some physiological character responses of rice under drought conditions in a paddy system	Journal of the International Society for Southeast Asian Agricultural Sciences	20	104-114	2014		
40823	0	Osugi A., Izawa T.	Critical Gates in Day-Length Recognition to Control the Photoperiodic Flowering	Adv. Bot. Res.	72	103-130	2014		
40824	0	Fukuoka S.a, Yamamoto S.I.a, Mizobuchi R.a, Yamanouchi U.a, Ono K.a, Kitazawa N.a, Yasuda N.b, Fujita Y.b c, Thi Thanh Nguyen T.b d, Koizumi S.b e, Sugimoto K.a, Matsumoto T.a f, Yano M.a	Multiple functional polymorphisms in a single disease resistance gene in rice enhance durable resistance to blast	Sci Rep	4		2014		
40825	0	Ota Y.a, Ishiguro S.a, Aoyama E.a, Aiba R.a, Iwashiro R.a, Tanabata T.b c, Takamure I.a, Fujino K.a, Kishima Y.a	Isolation of a major genetic interaction associated with an extreme phenotype using assorted F2 populations in rice	Molecular Breeding	33	997-1003	2014		
40826	0	Tanaka W., Toriba T., Hirano H.Y.	Flower Development in Rice	Adv. Bot. Res.	72	221-262	2014		
40827	0	Angeles-Shim R.B.a b, Vinarao R.B.a, Marathi B.a, Jena K.K.a	Molecular analysis of oryza latifolia Desv. (CCDD genome)-derived introgression lines and identification of value-added traits for rice (O. sativa L.) improvement	Journal of Heredity	105	676-689	2014		
40828	23895552	Chen Y.a, Zhai S.a, Zhang H.a, Zuo R.a, Wang J.a, Guo M.a c, Zheng X.a, Wang P.b, Zhang Z.a	Shared and distinct functions of two Gti1/Pac2 family proteins in growth, morphogenesis and pathogenicity of Magnaporthe oryzae	Environ. Microbiol.	16	788-801	2014		
40829	0	Sarangi S.K.a, Maji B.a, Singh S.b, Sharma D.K.c, Burman D.a, Mandal S.a, Ismail A.M.d, Haefele S.M.e	Crop establishment and nutrient management for dry season (boro) rice in coastal areas	Agron J	106	2013-2023	2014		
40830	0	Deng Y.a, Jin Y.a, Luo Y.a, Zhong Y.a, Yue J.a, Song X.b, Zhao Y.a c	Impact of continuous or cycle high hydrostatic pressure on the ultrastructure and digestibility of rice starch granules	J. Cereal Sci.	60	302-310	2014		
40831	0	Truong T.H., Yuet W.C., Hall M.D.	Glycemic index of American-grown jasmine rice classified as high	Int J Food Sci Nutr	65	436-439	2014		
40832	0	Rowell C.a, Kuiper N.a, Al-Saad K.b, Nriagu J.c, Shomar B.a	A market basket survey of As, Zn and Se in rice imports in Qatar: Health implications	Food and Chemical Toxicology	70	33-39	2014		
40833	0	Li J.a, Sun Y.b, Liu H.c d, Wang Y.b, Jia Y.e, Xu M.b	Genetic variation and evolution of the Pit blast resistance locus in rice	Genet. Resour. Crop Evol.	61	473-489	2014	PIT	Pit, Pit(K59), Pit(Npb), Pi-t, PitNpb, PitK59, Pit1, OsPit1
40834	24739238	Yadav D.K.a, Shukla D.b, Tuteja N.a	Isolation, in silico characterization, localization and expression analysis of abiotic stressresponsive rice G-protein beta subunit (RGB1)	Plant Signaling and Behavior	9		2014		
40835	0	Elsharkawy M.M.a, Hassan N.b c, Ali M.b, Mondal S.N.d, Hyakumachi M.e	Effect of zoysiagrass rhizosphere fungal isolates on disease suppression and growth promotion of rice seedlings	Acta Agriculturae Scandinavica Section B: Soil and Plant Science	64	135-140	2014		
40836	0	Yi Z.a, Wang X.a, Hu Y.a, Yu Z.b	Worldwide patent map analysis of mechanization technologies relating to field crop production i: A case study on rice	International Agricultural Engineering Journal	23	15-24	2014		
40837	0	Kakar K.U.a, Duan Y.P.b, Nawaz Z.c, Sun G.d, Almoneafy A.A.a, Hassan M.A.e, Elshakh A.a, Li B.a, Xie G.L.a	A novel rhizobacterium Bk7 for biological control of brown sheath rot of rice caused by Pseudomonas fuscovaginae and its mode of action	European Journal of Plant Pathology	138	819-834	2014		
40838	0	Urriola J.a, Rathore K.S.a b	Temporal and spatial activities of a rice glutelin promoter in transgenic sorghum	Plant Cell Tissue Organ Cult.	116	227-234	2014		
40839	0	Nitcher R.a, Pearce S.a, Tranquilli G.a b, Zhang X.a, Dubcovsky J.a c	Effect of the hope FT-B1 allele on wheat heading time and yield components	Journal of Heredity	105	666-675	2014		
40840	0	Pei W.a, Lan Y.B.b, Luo X.W.a, Zhou Z.Y.a, Wang Z.b, Wang Y.c	Integrated sensor system for monitoring rice growth conditions based on unmanned ground vehicle system	International Journal of Agricultural and Biological Engineering	7	75-81	2014		
40841	0	Oard J.H., Harrell D.L., Groth D.E., Bearb K.F., White III L.M., Linscombe S.D.	Registration of 'CL261' Rice	Journal of Plant Registrations	8	131-134	2014		
40842	0	Folsom J.J.a, Begcy K.a, Hao X.b, Wang D.b, Walia H.a	Rice fertilization-independent Endosperm1 regulates seed size under heat stress by controlling early endosperm development	Plant Physiol.	165	238-248	2014		
40843	0	Lanka S.K., Stout M.J., Ottea J.A.	Evaluation of neonicotinoids as pyrethroid alternatives for rice water weevil management in water-seeded rice	Crop Protection	56	37-43	2014		
40844	0	Broadhurst C.L.a b, Chaney R.L.a, Davis A.P.b, Cox A.c, Kumar K.c, Reeves R.D.d, Green C.E.a	Growth and Cadmium Phytoextraction by Swiss Chard, Maize, Rice, Noccaea caerulescens, and Alyssum murale in Ph Adjusted Biosolids Amended Soils	Int J Phytoremediation	17	25-39	2015		
40845	0	Min B.a, McClung A.b, Chen M.H.b	Effects of hydrothermal processes on antioxidants in brown, purple and red bran whole grain rice (Oryza sativa L.)	Food Chem	159	106-115	2014		
40846	0	Hussien A.a, Tavakol E.a, Horner D.S.b, Mu?oz-Amatria?n M.c, Muehlbauer G.J.c, Rossini L.a d	Genetics of tillering in rice and barley	Plant Genome	7		2014		
40847	24173818	Cui L.a b c, Feng X.b, Lin C.J.b d e, Wang X.a, Meng B.b, Wang X.b c, Wang H.b c	Accumulation and translocation of 198Hg in four crop species	Environmental Toxicology and Chemistry	33	334-340	2014		
40848	0	Joshi R.a c, Ramanarao M.V.a, Lee S.a, Kato N.b, Baisakh N.a	Ectopic expression of ADP ribosylation factor 1 (SaARF1) from smooth cordgrass (Spartina alterniflora Loisel) confers drought and salt tolerance in transgenic rice and Arabidopsis	Plant Cell Tissue Organ Cult.	117	17-30	2014		
40849	0	Farmaha B.S.	Evaluating Animo Model for Predicting Nitrogen Leaching in Rice and Wheat	Arid Land Research and Management	28	25-35	2014		
40850	0	Oard J.H., Harrell D.L., Groth D.E., Bearb K.F., White III L.M., Linscombe S.D.	Registration of 'Mermentau' Rice	Journal of Plant Registrations	8	135-138	2014		
40852	0	Badza S.a, Jevremovic T.b	Neutron activation analysis of Californian and Japanese rice	Journal of Radioanalytical and Nuclear Chemistry	299	427-431	2014		
40853	0	Lu Y.L.a, Burgos N.R.b, Wang W.X.a, Yu L.Q.a	Transgene Flow from Glufosinate-Resistant Rice to Improved and Weedy Rice in China	Rice Science	21	271-281	2014		
40855	0	Ma J.a, Jia M.H.b, Jia Y.b	Characterization of rice blast resistance gene Pi61(t) in rice germplasm	Plant Dis.	98	1200-1204	2014	PI61	Pi61(t)
40856	0	Klassen S.P.a, Villa J.a, Adamchuk V.b c, Serraj R.a d	Soil mapping for improved phenotyping of drought resistance in lowland rice fields	Field Crops Res.	167	112-118	2014		
40857	0	Ye Q.a b, Yang X.G.b, Liu Z.J.b, Dai S.W.c, Li Y.b d, Xie W.J.b, Chen F.e	The effects of climate change on the planting boundary and potential yield for different rice cropping systems in southern China	Journal of Integrative Agriculture	13	1546-1554	2014		
40858	0	Mubeen K.a, Nadeem M.A.b, Tanveer A.b, Jhala A.J.c	Effects of seeding time and weed control methods in direct seeded rice (Oryza Sativa L.)	Journal of Animal and Plant Sciences	24	534-542	2014		
40859	0	Rogers C.W.a, Brye K.R.a, Smartt A.D.a, Norman R.J.a, Gbur E.E.b, Evans-White M.A.c	Cultivar and previous crop effects on methane emissions from drill-seeded, delayed-flood rice production on a silt-loam soil	Soil Sci	179	28-36	2014		
40860	0	Liu D.a b, Zhang H.c, Xu B.a, Tan J.b	Development of kinetic model structures for glutinous rice saccharification by different enzymes	J Food Process Eng	37	317-328	2014		
40861	0	Lee Y.a, Mauromoustakos A.b, Wang Y.J.a	Effects of heat treatments on the milling, physicochemical, and cooking properties of two long-grain rice cultivars during storage	Cereal Chem	91	56-64	2014		
40862	0	Belefant-Miller H., Grunden E.	Carotenoid metabolism is induced in rice bran during very high temperature stress	J. Sci. Food Agric.	94	1808-1815	2014		
40863	0	Knoblauch R.a, Ernani P.R.b, Deschamps F.C.c, Gatiboni L.C.d, Walker T.W.e, Louren?o K.S.f, Martins A.A.g, Pegoraro A.f	Rice straw incorporated just before soil flooding increases acetic acid formation and decreases available nitrogen [A incorpora??o da palha do arroz pr?ximo ao alagamento do solo aumenta a forma??o de ?cido ac?tico e diminui a disponibilidade de nitrog?nio]	Rev. Bras. Cienc. Solo	38	177-184	2014		
40864	0	Wan G.a, Dang Z.a, Wu G.b, Parajulee M.N.c, Ge F.d, Chen F.a	Single and fused transgenic Bacillus thuringiensis rice alter the species-specific responses of non-target planthoppers to elevated carbon dioxide and temperature	Pest Manag. Sci.	70	734-742	2014		
40865	0	Shi T.a e, Huang H.b, Sanderson M.J.a, Tax F.E.c d	Evolutionary dynamics of leucine-rich repeat receptor-like kinases and related genes in plants: A phylogenomic approach	J Integr Plant Biol	56	648-662	2014		
40866	0	E Z.G.a, Zhang Y.P.a, Zhou J.H.c d, Wang L.a b	Roles of the bZIP gene family in rice	Genetics and Molecular Research	13	3025-3036	2014		
40867	24518308	Mahattanatawee K.a, Rouseff R.L.b	Comparison of aroma active and sulfur volatiles in three fragrant rice cultivars using GC-Olfactometry and GC-PFPD	Food Chem	154	1-6	2014		
40868	0	Dandapat A.a b, Bhattacharyya J.a, Gayen S.a, Chakraborty A.a, Banga A.a c, Mukherjee R.a, Mandal C.C.a d, Hossain M.A.a e, Roy S.a, Basu A.a, Sen S.K.a	Variant Cry1Ab entomocidal Bacillus thuringiensis toxin gene facilitates the recovery of an increased number of lepidopteran insect resistant independent rice transformants against yellow stem borer (Scirpophaga incertulus) inflicted damage	J. Plant Biochem. Biotechnol.	23	81-92	2014		
40869	0	Rubia L.a, Rangan L.a b, Choudhury R.R.b, Kam?nek M.c, Dobrev P.c, Malbeck J.c, Fowler M.a, Slater A.a, Scott N.a, Bennett J.d, Peng S.d, Khush G.S.e, Elliott M.a	Changes in the chlorophyll content and Cytokinin Levels in the Top Three Leaves of New Plant Type Rice During Grain Filling	J. Plant Growth Regul.	33	66-76	2014		
40870	0	Deepthi V.a, Raksha B.b, Pooja S.b, Subashkumar R.a, Vivekanandhan G.a, Siva R.b, Babu S.b	Differential response of cultivated rice to pathogen challenge and abiotic stresses with reference to cationic peroxidase	Archives of Phytopathology and Plant Protection	47	1390-1399	2014		
40871	0	Chandrasekhar K.a b, Vijayalakshmi M.c, Vani K.a c, Kaul T.a, Reddy M.K.a	Phloem-specific expression of the lectin gene from Allium sativum confers resistance to the sap-sucker Nilaparvata lugens	Biotechnol. Lett.	36	1059-1067	2014		
40872	0	Mahajan G.R.a, Pandey R.N.a, Kumar D.b, Datta S.C.a, Sahoo R.N.c, Parsad R.d	Development of Critical Values for the leaf color Chart, SPAD and Fieldscout CM 1000 for Fixed Time Adjustable Nitrogen Management in Aromatic Hybrid Rice (Oryza sativa L.)	Commun Soil Sci Plant Anal	45	1877-1893	2014		
40873	0	Chattopadhyay K.a, Nath D.a, Mohanta R.L.a, Bhattacharyya S.b, Marndi B.C.a, Nayak A.K.a, Singh D.P.a, Sarkar R.K.a, Singh O.N.a	Diversity and validation of microsatellite markers in Saltol QTL region in contrasting rice genotypes for salt tolerance at the early vegetative stage	Aust J Crop Sci	8	356-362	2014		
40874	0	Divya B.a b, Robin S.a d, Rabindran R.a e, Manjunath H.a f, Valarmathi P.a e, Joel A.J.a c	Resistance reaction of gene introgressed lines against rice blast (Pyricularia oryzae) disease	Australasian Plant Pathology	43	177-191	2014		
40875	0	Nayyar H.a, Kaur R.a, Kaur S.a, Singh R.b	gamma-Aminobutyric Acid (GABA) Imparts Partial Protection from Heat Stress Injury to Rice Seedlings by Improving Leaf Turgor and Upregulating Osmoprotectants and Antioxidants	J. Plant Growth Regul.	33	408-419	2014		
40876	0	Ganie S.A.a b, Karmakar J.a, Roychowdhury R.a, Mondal T.K.b, Dey N.a	Assessment of genetic diversity in salt-tolerant rice and its wild relatives for ten SSR loci and one allele mining primer of salT gene located on 1st chromosome	Plant Systematics and Evolution	300	1741-1747	2014		
40877	0	Vijayalakshmi D.a, Kishor Ashok S.b, Raveendran M.b	Screening for salinity stress tolerance in rice and finger millet genotypes using shoot Na+/K+ ratio and leaf carbohydrate contents as key physiological traits	Indian Journal of Plant Physiology	19	156-160	2014		
40878	0	Choudhary A.K.a, Suri V.K.b	Integrated Nutrient-Management Technology for Direct-Seeded Upland Rice (Oryza sativa) in Northwestern Himalayas	Commun Soil Sci Plant Anal	45	777-784	2014		
40879	0	Kumar A., Kanwal P., Gupta A.K., Singh B.R., Gaur V.S.	A Full-Length DOF1 Transcription Factor of Finger Millet and its Response to a Circadian Cycle	Plant Molecular Biology Reporter	32	419-427	2014		
40880	0	Shiriga K.a b, Sharma R.a, Kumar K.b, Yadav S.K.c, Hossain F.a, Thirunavukkarasu N.a	Genome-wide identification and expression pattern of drought-responsive members of the NAC family in maize	Meta Gene	2	407-417	2014		
40881	0	Kumar S.a, Dwivedi S.K.a, Singh S.S.a, Bhatt B.P.a, Mehta P.a, Elanchezhian R.b, Singh V.P.c, Singh O.N.d	Morpho-physiological traits associated with reproductive stage drought tolerance of rice (Oryza sativa L.) genotypes under rain-fed condition of eastern Indo-Gangetic Plain	Indian Journal of Plant Physiology	19	87-93	2014		
40882	0	Bornare S.S., Mittra S.K., Mehta A.K.	Genetic variability, correlation and path analysis of floral, yield and its component traits in CMS and restorer lines of rice (Oryza sativa L.)	Bangladesh Journal of Botany	43	45-52	2014		
40883	0	Panda D.a b, Sarkar R.K.a	Mechanism associated with nonstructural carbohydrate accumulation in submergence tolerant rice (Oryza sativa L.) cultivars	J Plant Interact	9	62-68	2014		
40884	0	Dubey A.K.a b, Godbole A.c, Srinivasan S.d, Mathew M.K.a	VDAC properties are influenced by the source of its purification	International Journal of Pharmacy and Pharmaceutical Sciences	6	126-130	2014		
40885	0	Ramanjaneyulu A.V.a, Gouri Shankar V.a, Neelima T.L.b, Shashibhusahn D.a	Genetic analysis of rice (Oryza sativa L.) genotypes under aerobic conditions on alfisols	Sabrao Journal of Breeding and Genetics	46	99-111	2014		
40886	0	Khan M.R., Haque Z., Kausar N.	Management of the root-knot nematode Meloidogyne graminicola infesting rice in the nursery and crop field by integrating seed primingand soil application treatments of pesticides	Crop Protection	63	15-25	2014		
40887	0	Pandey S.a b, Singh B.a, Kumar J.a	DNA typing and virulence determination of Xanthomonas oryzae pv. oryzae population for the management of bacterial leaf blight of rice in Udham Singh Nagar, India	European Journal of Plant Pathology	138	847-862	2014		
40888	0	Ali M.N.a, Ghosh B.a, Gantait S.b c, Chakraborty S.a	Selection of Rice Genotypes for Salinity Tolerance Through Morpho-Biochemical Assessment	Rice Science	21	288-298	2014		
40889	0	Zameer Hussain S.a, Singh B.b	Functional properties of re-fabricated rice as affected by die during extrusion process	International Journal of Food Engineering	10	417-426	2014		
40890	0	Malathi S., Madhavan S., Rabindran R., Paranidharan V., Velazhahan R.	Differential induction of peroxidase and polyphenol oxidase isozymes in suspension-cultured cells of blast resistant and susceptible genotypes of rice in response to treatment with Magnaporthe grisea elicitor and toxin	Archives of Phytopathology and Plant Protection	47	2524-2532	2014		
40891	0	Singh R.a, Narzary D.a c, Bhardwaj J.a, Singh A.K.a, Kumar S.a, Kumar A.b	Molecular diversity and SSR transferability studies in Vetiver grass (Vetiveria zizanioides L. Nash)	Ind Crops Prod	53	187-198	2014		
40892	0	Shree M.L.S.a, Vasantha K.M.a, Rani J.A.S.a, Devendra R.a, Prasad T.G.a, Shrivastava M.b, Sashidhar V.R.a	Salt tolerant and salt susceptible rice (Oriza sativa) varieties differ significantly in 22Na uptake but only up to the first 1 h after salt imposition	Indian Journal of Plant Physiology	19	14-20	2014		
40893	0	Randhawa G.J., Singh M., Sood P., Bhoge R.K.	Multitarget real-time PCR-based system: Monitoring for unauthorized genetically modified events in India	J. Agric. Food Chem.	62	7118-7130	2014		
40894	0	Saikumar S.a b c, Kalmeshwer Gouda P.d, Saiharini A.a, Varma C.M.K.e, Vineesha O.f, Padmavathi G.c, Shenoy V.a	Major QTL for enhancing rice grain yield under lowland reproductive drought stress identified using an O. sativa/O. glaberrima introgression line	Field Crops Res.	163	119-131	2014		
40895	0	Mondal K.K.a, Meena B.R.a, Junaid A.a, Verma G.a, Mani C.a, Majumder D.b, Khicher M.a, Kumar S.a, Banik S.c	Pathotyping and genetic screening of type III effectors in Indian strains of Xanthomonas oryzae pv. oryzae causing bacterial leaf blight of rice	Physiol. Mol. Plant Pathol.	86	98-106	2014		
40896	24791420	Sujith Kumar M.S.a, Dahuja A.a, Rai R.D.a, Walia S.b, Tyagi A.a	Role of gamma-oryzanol in drought-tolerant and susceptible cultivars of rice (Oryza sativa L.)	Indian Journal of Biochemistry and Biophysics	51	75-80	2014		
40897	0	Jha V.B.b, Sharma A.K.a, Singh B.a	Genetic divergence in early rice genotypes	Ann Biol	30	68-70	2014		
40898	0	Sellammal R.a, Robin S.a, Raveendran M.b	Association and heritability studies for drought resistance under varied moisture stress regimes in backcross inbred population of rice	Rice Science	21	150-161	2014		
40899	0	Chatterjee M.b, Jagan Mohan Reddy P.a	Identification of salt tolerance genotypes using ssr markers in rice	Research Journal of Pharmaceutical, Biological and Chemical Sciences	5	1312-1317	2014		
40900	0	Semwal D.P., Pandey A., Bhandari D.C., Dhariwal O.P., Sharma S.K.	Variability study in seed morphology and uses of indigenous rice landraces (Oryza sativa L.) collected from West Bengal, India	Aust J Crop Sci	8	460-467	2014		
40901	0	Kulkarn S.S., Chavan P.D.	Study of effect of waterlogging on root anatomy of ragi and rice	American Journal of Plant Physiology	9	46-51	2014		
40902	0	Nagendran K.a, Karthikeyan G.a, Mohammed Faisal P.a, Kalaiselvi P.a, Raveendran M.b, Prabakar K.a, Raguchander T.a	Exploiting endophytic bacteria for the management of sheath blight disease in rice	Biological Agriculture and Horticulture	30	8-23	2014		
40903	0	Sunil C.M.a, Shankaralingappa B.C.a, Shruthi M.K.a, Hittalmani S.b, Harinikumar K.M.c	Influence of integrated package of agrotechniques on quality parameters of aerobic rice	Journal of Agronomy	13	58-64	2014		
40904	0	Gauthami P.a, Subrahmanyam D.b, Padma V.a, Kiran T.V.b, Rao Y.V.b, Rao P.R.b, Voleti S.R.b	Variation in leaf photosynthetic response of rice genotypes to post-anthesis water deficit	Indian Journal of Plant Physiology	19	127-137	2014		
40905	0	Suresh A., Ramesh M., Reddy S.R.	Fluorescent pseudomonads contribute to the enhanced growth and yield of rice cultivated under system of rice intensification (SRI)	Indian Journal of Agricultural Research	48	287-293	2014		
40906	0	Mahajan G.R.a, Pandey R.N.b, Datta S.C.b, Kumar D.c, Sahoo R.N.d, Parsad R.e	Fertilizer nitrogen, phosphorus and sulphur prescription for aromatic hybrid rice (Oryza sativa L.) using targeted yield approach	Proceedings of the National Academy of Sciences India Section B - Biological Sciences	84	537-547	2014		
40907	0	Manikandan R., Sathish S., Balakrishnan N., Balasubramani V., Sudhakar D., Udayasuriyan V.	Agrobacterium mediated transformation of indica rice with synthetic cry2AX1 gene for resistance against rice leaf folder	Journal of Pure and Applied Microbiology	8	3135-3142	2014		
40908	0	Verma S.K.a, Saxena R.R.a, Saxena R.R.b, Xalxo M.S.a, Verulkar S.B.c	QTL for grain yield under water stress and non-stress conditions over years in rice (Oryza sativa L.)	Aust J Crop Sci	8	916-926	2014		
40909	0	Gayen D.a, Ali N.a, Ganguly M.a, Paul S.a, Datta K.a, Datta S.K.a b	RNAi mediated silencing of lipoxygenase gene to maintain rice grain quality and viability during storage	Plant Cell Tissue Organ Cult.	118	229-243	2014		
40910	0	Mahmod I.F.a, Barakbah S.S.a, Osman N.a, Omar O.b	Physiological response of local rice varieties to aerobic condition	Int J Agric Biol	16	738-744	2014		
40911	0	Ninsuwan U.a, Pornsirikarn P.b, Jundee N.b, Puima N.b	Identification of salt tolerance in Thai indigenous rice on the basis of the Na/K ratio and salt stress responses	Asian Journal of Plant Sciences	12	247-251	2014		
40912	0	Fatah T.a f, Rafii M.Y.a b, Rahim H.A.c, Meon S.d, Azhar M.c, Latif M.A.a e	Cloning and analysis of QTL linked to blast disease resistance in malaysian rice variety pongsu seribu 2	Int J Agric Biol	16	395-400	2014		
40913	0	Rubel M.H.a, Hassan L.a, Islam M.M.b, Robin A.H.K.a, Alam J.a	Evaluation of rice genotypes under salt stress at the seedling and reproductive stages using phenotypic and molecular markers	Pak J Bot	46	423-432	2014		
40914	0	Sayari M., Babaeizad V., Ghanbari M.A.T., Rahimian H.	Expression of the pathogenesis related proteins, NH-1, PAL, and lipoxygenase in the iranian tarom and khazar rice cultivars, in reaction to rhizoctonia solani -the causal agent of rice sheath blight	Journal of Plant Protection Research	54	36-43	2014		
40915	0	Nascimento J.B.a, Barrigossi J.A.F.b, Borba T.C.D.O.b, Martins J.F.D.S.c, Fernandes P.M.a, Mello R.N.D.b	Evaluation of rice genotypes for sugarcane borer resistance using phenotypic methods and molecular markers	Crop Protection	67	43-51	2015		
40916	24444958	Huang Y.C., Lai H.M.	Characteristics of the starch fine structure and pasting properties of waxy rice during storage	Food Chem	152	432-439	2014		
40917	0	Aumonde T.Z.a, Pedo T.b, Martinazzo E.G.c, Borella J.d, do Amarante L.e, Villela F.A.a, de Moraes D.M.e	Action of Zantedeschia Aethiopica extracts in seed physiological quality, photosynthetic pigments and antioxidative metabolism of red rice seedlings [Acao de extratos de Zantedeschia aethiopica na qualidade fisiologica de sementes, pigmentos fotossinteticos e metabolismo antioxidativo de plantulas de arroz vermelho]	Bioscience Journal	30	1412-1420	2014		
40918	0	Mitchell J.H.a, Sipaseuthb, Fukai S.a	Farmer participatory variety selection conducted in high- and low-toposequence multi-location trials for improving rainfed lowland rice in Lao PDR	Crop and Pasture Science	65	655-666	2014		
40919	0	Stein R.J.a b, Lopes S.I.G.c, Fett J.P.a d	Iron toxicity in field-cultivated rice: Contrasting tolerance mechanisms in distinct cultivars	Theoretical and Experimental Plant Physiology	26	135-146	2014		
40920	0	Jedrum S.a, Thanachit S.a, Anusontpornperm S.a, Wiriyakitnateekul W.b	Soil amendments effect on yield and quality of jasmine rice grown on Typic Natraqualfs, Northeast Thailand	International Journal of Soil Science	9	37-54	2014		
40921	0	Horuz A., Korkmaz A.	The effect of silicon fertilization on reducing salt stress in rice (Oryza sativa L.) [Celtikte (Oryza sativa L.) tuz stresinin azalti{dotless}lmasi{dotless}nda silisyumlu gubrelemenin etkisi]	Tarim Bilimleri Dergisi	20	215-229	2014		
40922	24846922	Chen Z.a, Yan W.b, Wang N.a, Zhang W.a, Xie G.a, Lu J.a, Jian Z.a, Liu D.a, Tang X.c	[Cloning of a rice male sterility gene by a modified MutMap method].	Yi Chuan	36	85-93	2014		
40923	0	Pereira M.P., Santos C., Gomes A., Vasconcelos M.W.	Cultivar variability of iron uptake mechanisms in rice (Oryza sativa L.)	Plant Physiology and Biochemistry	85	21-30	2014		
40924	0	Kaya H.B.a, Demirci M.b, Tanyolac B.a	Genetic structure and diversity analysis revealed by AFLP on different Echinochloa spp. from northwest Turkey	Plant Systematics and Evolution	300	1337-1347	2014		
40925	0	Jaksomsak P.a, Sangruan P.b, Thomson G.c, Rerkasem B.b, Dell B.c, Prom-U-Thai C.a d	Uneven distribution of zinc in the dorsal and ventral sections of rice grain	Cereal Chem	91	124-129	2014		
40926	0	Chen C.C.a, Huang M.Y.b, Lin K.H.c, Wong S.L.d, Huang W.D.a, Yang C.M.b	Effects of light quality on the growth, development and metabolism of rice seedlings (Oryza sativa L.)	Research Journal of Biotechnology	9	15-24	2014		
40927	0	Hasan M.J.a, Kulsum U.a, Rahman M.H.a, Akter A.a, Shamsuddin A.K.M.b	Comparative study of floral characteristics in the component lines of hybrid rice (oryza sativa L.)	Bangladesh Journal of Botany	43	1-8	2014		
40928	0	Milbredt D., Patallo E.P., Van Pee K.H.	A tryptophan 6-halogenase and an amidotransferase are involved in thienodolin biosynthesis	Chembiochem	15	1011-1020	2014		
40929	0	Cheng A.a b, Ismail I.b, Osman M.c, Hashim H.d	Mapping of quantitative trait loci for aroma, amylose content and cooked grain elongation traits in rice	Plant OMICS	7	152-157	2014		
40930	0	Palanog A.D.a b c, Swamy B.P.M.b, Shamsudin N.A.A.b d, Dixit S.b, Hernandez J.E.a, Boromeo T.H.a, Cruz P.C.S.a, Kumar A.b	grain yield QTLs with consistent-effect under reproductive-stage drought stress in rice	Field Crops Res.	161	46-54	2014		
40931	0	Hidayat C.a b, Prastowo I.b c, Hastuti P.a, Restiani R.b	Effect of ethanol concentrations on rice bran protease activity and ester synthesis during enzymatic synthesis of Oleic Acid Ethyl Ester in a fed-batch system using crude rice bran (Oryza sativa) lipase	Biocatal. Biotransformation	32	231-235	2014		
40932	0	Iqbal S.Z.a b, Mustafa H.G.a, Asi M.R.c, Jinap S.b d	Variation in vitamin E level and aflatoxins contamination in different rice varieties	J. Cereal Sci.	60	352-355	2014		
40933	0	Aslam K., Arif M.	SSR analysis of chromosomes 3 and 7 of rice (Oryza Staiva L.) associated with grain length	Pak J Bot	46	1363-1373	2014		
40934	0	Ashraf M.A., Biswas S., Razzaque S., Haque T., Seraj Z.I.	Cloning and characterization of Alcohol Dehydrogenase (Adh) promoter region for expression under submergence and salinity stress	Plant Tissue Culture and Biotechnology	24	111-120	2014		
40935	0	Seesang J., Sripichitt P., Sreewongchai T.	Heterosis and inheritance of fertility-restorer genes in rice	ScienceAsia	40	48-52	2014		
40936	0	Alberto Bucher C.a, Azevedo Santos L.a, de Matos Nogueira E.b, Passos Rangel R.a, Regina de Souza S.c, Silvestre Fernandes M.a	The transcription of nitrate transporters in upland rice varieties with contrasting nitrate-uptake kinetics	Journal of Plant Nutrition and Soil Science	177	395-403	2014		
40937	0	Sultan M.S.a, Abdel-Moneam M.A.a, El-Abd A.B.b, El-Naem S.A.b	Inheritance of some root and grain quality traits in rice under water deficiency conditions	Journal of Agronomy	13	89-99	2014		
40938	0	Nadarajah K.a, Omar N.S.a, Thing T.Y.b	Molecular characterization of a WRKY gene from Oryza sativa indica cultivar UKMRC9	Plant OMICS	7	63-71	2014		
40939	0	Fotokian M.H., Agahi K.	Biplot Analysis of Genotype by Environment for Cooking Quality in Hybrid Rice: A Tool for Line ~ Tester Data	Rice Science	21	282-287	2014		
40940	0	Ashraf M.Y.a, Iqbal N.b, Ashraf M.b, Akhter J.a	MODULATION OF PHYSIOLOGICAL AND BIOCHEMICAL METABOLITES IN SALT STRESSED RICE BY FOLIAR APPLICATION OF ZINC	J Plant Nutr	37	447-457	2014		
40941	0	Hossain M.M.a, Sultana F.b, Asadur Rahman A.H.M.a	A comparative screening of hybrid, modern varieties and local rice cultivar for brown leaf spot disease susceptibility and yield performance	Archives of Phytopathology and Plant Protection	47	795-802	2014		
40942	0	Din A.R.J.M.a, Hanapi S.Z.b, Supari N.b, Alam S.A.Z.b, Javed M.A.c, Tin L.C.d, Sarmidi M.R.b	Germination, seedling growth, amylase and protease activities in Malaysian upland rice seed under microbial inoculation condition	Journal of Pure and Applied Microbiology	8	2627-2635	2014		
40943	0	Campos N.a, Torne J.M.h, Bleda M.J.b, Manich A.c, Urreta I.e, Montalban I.A.f, Castanon S.d, Moncalean P.g, Santos M.i	Proteomic and transcriptomic analysis of rice tranglutaminase and chloroplast-related proteins	Plant Science	229	142-153	2014		
40944	24846967	Liu Q., Xue Q., Xu J.	[Phylogenetic analysis of DNA demethylase genes in angiosperm].	Yi Chuan	36	276-285	2014		
40945	0	de Oliveira L.F.V.a b, Christoff A.P.a b, de Lima J.C.a b, de Ross B.C.F.b, Sachetto-Martins G.c, Margis-Pinheiro M.a, Margis R.a b d	The Wall-associated Kinase gene family in rice genomes	Plant Science	229	181-192	2014		
40946	0	Raimondi J.V.a, Marschalek R.b, Nodari R.O.c	Genetic base of paddy rice cultivars of southern brazil [Base genetica das cultivares de arroz irrigado do sul do brasil]	Crop Breeding and Applied Biotechnology	14	194-199	2014		
40947	24206686	Fraiture M.A.a b c d, Herman P.b, Taverniers I.c, De Loose M.c, Deforce D.d, Roosens N.H.a	An innovative and integrated approach based on DNA walking to identify unauthorised GMOs	Food Chem	147	60-69	2014		
40948	0	Barozai M.Y.K., Din M.	The relationship between codon usage bias and cold resistant genes	Pak J Bot	46	823-826	2014		
40949	0	Soares V.N.a, Radke A.K.a, Tillmann M.A.A.a, Moura A.B.b, Schuch L.O.B.a	Physiological performance of rice seeds treated with thiamethoxam or rhizobacteria under different temperatures [Desempenho fisiologico de sementes de arroz tratadas com rizobacterias e tiametoxam submetidas a diferentes temperaturas]	Journal of Seed Science	36	186-193	2014		
40950	0	Hou Y.L.a, Hong C.Y.b, Chen K.Y.a	Functional characterization of the stunt lemma palea 1 mutant allele in rice	Plant Growth Regul.	73	257-265	2014		
40951	0	Hathout T.A.a, El-Khallal S.M.a, Abdelgawad Z.A.a, Said E.M.b, Al Mokadem A.Z.a	Enhancing rice salt stress tolerance by priming with Validamycin A	International Journal of Botany	10	1-12	2014		
40952	0	Islam M.S.a c, Sarkar M.A.R.b, Alam M.J.a c, Kashem M.A.a c, Rafii M.Y.c d, Latif M.A.d e	Effect of number of seedling hill-1 on the growth and yield of aromatic fine rice varieties in rain fed condition	Life Science Journal	11	109-115	2014		
40953	0	Rodenburg J.a, Demont M.b, Sow A.c, Dieng I.d	Bird, weed and interaction effects on yield of irrigated lowland rice	Crop Protection	66	46-52	2014		
40954	0	Hasan M.M., Alam M.A., Monjurul Alam Mondal M., Puteh A.B.	Varietal performance and effect of planting method on yield and yield contributing characteristics of rice	Life Science Journal	11	9-13	2014		
40955	0	Harahap S.M.a, Ghulamahdi M.b, Aziz S.A.b, Sutandi A.c, Miftahudind	Endurance test of three paddy genotypes to different iron toxicity level	Journal of Agronomy	13	110-116	2014		
40956	0	Al-Shugeairy Z.a b, Islam M.S.a, Shrestha R.a c, Al-Ogaidi F.a b, Norton G.J.a, Price A.H.a	High throughput screening of rooting depth in rice using buried herbicide	Annals of Applied Biology	165	96-107	2014		
40957	0	Yazdani M.a, Kochak M.b, Bagheri H.c	Segregating rice genotypes by cluster analysis procedure at different salt stress condition	Advances in Environmental Biology	8	383-387	2014		
40958	0	Midrarullaha b c, Ahmed B.a, Mirza M.S.b	Response of rice to inoculation with plant growth promoting Rhizobacteria in control lab environment and field experiment	Pak J Bot	46	1121-1124	2014		
40959	0	Maksup S.a, Roytrakul S.b, Supaibulwatana K.a	Physiological and comparative proteomic analyses of Thai jasmine rice and two check cultivars in response to drought stress	J Plant Interact	9	43-55	2014		
40960	0	Nadarajah K.a, Omar N.S.a, Sukri H.b	Molecular isolation and characterization of the Rac GTPase gene from Oryza sativa indica cultivar UKMRC9	Aust J Crop Sci	8	558-567	2014		
40961	0	Atique-ur-Rehmana b, Farooq M.a c d, Nawaz A.a, Ahmad R.a	Influence of boron nutrition on the rice productivity, kernel quality and biofortification in different production systems	Field Crops Res.	169	123-131	2014		
40962	0	Son N.T.a, Chen C.F.a b, Chen C.R.b, Minh V.Q.c, Trung N.H.c	A comparative analysis of multitemporal MODIS EVI and NDVI data for large-scale rice yield estimation	Agricultural and Forest Meteorology	197	52-64	2014		
40963	0	Xangsayasane P.a d, Fukai S.b, Mitchell J.H.b, Jongdee B.c, Jothityangkoon D.d, Pantuwan G.c, Inthapanya P.a	Genotypic performance in multi-location on-farm trials for evaluation of different on-station screening methods for drought-prone rainfed lowland rice in Lao PDR	Field Crops Res.	160	1-11	2014		
40964	0	Liyanaarachchi G.D.a, Kottearachchi N.S.a, Samarasekera R.b	Volatile profiles of traditional aromatic rice varieties in Sri Lanka	Journal of the National Science Foundation of Sri Lanka	42	87-93	2014		
40965	0	Kijoji A.A.a b d, Nchimbi-Msolla S.a, Kanyeka Z.L.c, Serraj R.b e, Henry A.b	Linking root traits and grain yield for rainfed rice in sub-Saharan Africa: Response of Oryza sativa~Oryza glaberrima introgression lines under drought	Field Crops Res.	165	25-35	2014		
40966	0	Altop E.K.a, Mennan H.a, Streibig J.C.b, Budak U.a, Ritz C.c	Detecting ALS and ACCase herbicide tolerant accession of Echinochloa oryzoides (Ard.) Fritsch. in rice (Oryza sativa L.) fields	Crop Protection	65	202-206	2014		
40967	0	Liza M.M.J.a, Islam M.R.a, Jahiruddin M.a, Hasan M.M.b, Amirul Alam M.b, Shamsuzzaman S.M.c, Samsuri A.W.d	Residual effects of organic manures with different levels of chemical fertilizers on rice	Life Science Journal	11	6-12	2014		
40968	0	Muhammad I.a, Zia M.A.a b, Ali S.a b, Roomi S.a, Iqbal A.a, Abbas Z.a b, Ali G.M.a b	Development of efficient regeneration system in different recalcitrant rice cultivars and expression analysis of putative transgenic plants	Int J Agric Biol	16	700-706	2014		
40969	0	Khan S.K.a b, Iqbal J.a b, Saeed M.a b	Comparative study of agronomic traits of different rice varieties grown under saline and normal conditions	Journal of Animal and Plant Sciences	24	634-642	2014		
40970	0	Aydin G.a b, Yucel M.b, Chan M.T.c d, Oktem H.A.b	Evaluation of abiotic stress tolerance and physiological characteristics of potato (Solanum tuberosum L. cv. Kennebec) that heterologously expresses the rice Osmyb4 gene	Plant Biotechnol Rep	8	295-304	2014		
40971	0	Ayamdoo A.J.a, Demuyakor B.a, Saalia F.K.b, Francis A.a	Effect of varying parboiling conditions on the cooking and eating/sensory characteristics of Jasmine 85 and Nerica 14 rice varieties	American Journal of Food Technology	9	1-14	2014		
40972	0	Aslani F.a, Juraimi A.S.a, Ahmad-Hamdani M.S.a, Omar D.b, Alam M.A.a, Hashemi F.S.G.c, Hakim M.A.d, Uddin M.K.a	Allelopathic effect of methanol extracts from Tinospora tuberculata on selected crops and rice weeds	Acta Agriculturae Scandinavica Section B: Soil and Plant Science	64	165-177	2014		
40973	0	Mombeini M.a, Siadat S.A.b, Lack S.a, Gilani A.A.c, Rasekh A.R.d	Physiological responses to heat stress in rice (Oryza sativa. L): I. nitrogen status, chlorophyll content and cell membrane thermal stability (CMTS) of flag leaf	Advances in Environmental Biology	8	1420-1430	2014		
40974	0	Khwanchai P.a, Chinprahast N.a, Pichyangkura R.b, Chaiwanichsiri S.a	Gamma-aminobutyric acid and glutamic acid contents, and the GAD activity in germinated brown rice (Oryza sativa L.): Effect of rice cultivars	Food Sci. Biotechnol.	23	373-379	2014		
40975	0	Lee S.T., Huang W.L.	Osmotic stress stimulates shoot organogenesis in callus of rice (Oryza sativa L.) via auxin signaling and carbohydrate metabolism regulation	Plant Growth Regul.	73	193-204	2014		
40976	0	Daiponmak W.a, Senakun C.b, Siriamornpun S.c	Antiglycation capacity and antioxidant activities of different pigmented Thai rice	International Journal of Food Science and Technology	49	1805-1810	2014		
40977	0	Ibrahim E.A.M., Abo El-Dahab M.S.	Seed discoloration and their effect on seedlings growth of Egyptian hybrid rice	Research Journal of Seed Science	7	63-74	2014		
40978	0	Nakbanpote W., Panitlurtumpai N., Sangdee A., Sakulpone N., Sirisom P., Pimthong A.	Salt-tolerant and plant growth-promoting bacteria isolated from Zn/Cd contaminated soil: Identification and effect on rice under saline conditions	J Plant Interact	9	379-387	2014		
40979	0	Allhgholipour M.a, Farshdfar E.b, Rabiei B.c	Molecular characterization and genetic diversity analysis of different rice cultivars by microsatellite markers	Genetika	46	187-198	2014		
40980	0	Hakim M.A.a b, Juraimi A.S.c, Hanafi M.M.a, Ismail M.R.a, Rafii M.Y.a, Islam M.M.d, Selamat A.c	The effect of salinity on growth, ion accumulation and yield of rice varieties	Journal of Animal and Plant Sciences	24	874-885	2014		
40982	0	Akator S.K.a b, Adjata D.K.a, Drissa S.a, Awande S.a, Zadji L.a, Sangare G.a, Sere Y.a, Gumedzoe Y.M.D.b	Pathological studies of pyricularia oryzae at M'be in coted'ivoire and ouedeme in Benin	Asian J Plant Pathol	8	10-17	2014		
40983	0	Saeedipour S.	The combined effects of salinity and foliar spray of different hormones on some biological aspects, dry matter accumulation and yield in two varieties of Indica rice differing in their level of salt tolerance	Proceedings of the National Academy of Sciences India Section B - Biological Sciences	84	721-733	2014		
40984	0	Chadhar A.R., Nadeem M.A., Tanveer A., Yaseen M.	Weed management boosts yield in fine rice under system of rice intensification [Influencia do manejo de plantas daninhas no aumento da producao de arroz fino no sistema de intensificacao de arroz]	Planta Daninha	32	291-299	2014		
40985	0	Khavari-Nejad R.A.a b, Najafi F.a, Rezaei M.a	The Influence of Cadmium Toxicity on Some Physiological Parameters as Affected by Iron in Rice (Oryza Sativa L.) Plant	J Plant Nutr	37	1202-1213	2014		
40986	0	Alifar N.a, Zaharah A.R.a, Ishak C.F.a, Awang Y.b, Khayambashi B.a	Selenium enrichment of paddy rice grains in Malaysia	Asian Journal of Crop Science	6	345-353	2014		
40987	0	Hussain Z., Ali S., Hayat Z., Zia M.A., Iqbal A., Ali G.M.	Agrobacterium mediated transformation of DREB1A gene for improved drought tolerance in rice cultivars (Oryza sativa L.)	Aust J Crop Sci	8	1114-1123	2014		
40988	18291034	Boutrot F., Chantret N., Marie-Fran?oise Gautier	Genome-wide analysis of the rice and Arabidopsis non-specific lipid transfer protein (nsLtp) gene families and identification of wheat nsLtp genes by EST data mining.	BMC Genomics	9	86	2008	OSC4,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,PTD1,_,_,_,_,_,_,_,C6,_,_,_,_,_,_,_,LTP1.15,LTP2.9,_,_,LTP2,_,_,_,_,_,_,_,_,_,_,_,_,_	Osc4, OsC4, Osg4B, OsLTPc1, OsLtpIII.1, C4,OsLTPd8, OsLtpV.4, PI,OsLTP1.20, OsLtpI.20, LTP1.20, OsLTPL14, LTPL14,OsLTP2.4, OsLtpII.4,OsLTP1.12, OsLtpI.12,OsLTP2.2, OsLtpII.2,OsLTPG24, OsLTPg24, OsLtpVIII.1, LTPG24, LTPg24, LtpVIII.1,OsLTP1.10, OsLtpI.10,OsLTP2.5, OsLtpII.5,OsLTPd12, OsLtpVI.4,OsLTPx3, OsLtpY.3,OsLTPx2, OsLtpY.2,OsLTP2.11, OsLtpII.11, LTP2.11, LtpII.11, OsLTPL159, LTPL159,OsLTP2.1, OsLtpII.1,OsLTPx1, OsLtpY.1,OsLTP1.1, T42, OsLtp1.1, LTP1.1,OsLTPd1, OsLtpIV.1,OsLTP1.2, OsLtpI.2, OsPTD1, Psd1,OsLTPd10, OsLtpVI.2,OsLTP1.6, OsLtpI.6,OsLTP1.7, OsLtpI.7,OsLTP1.5, OsLtpI.5,OsLTPd11, OsLTP6, OsLtpVI.3, OsDIL, DIL,OsLTP1.16, OsLtpI.16,OsLTP1.14, OsLtpI.14,Osc6, Osg6B, OsG6B, OsLTPG25, OsLTPg25, OsLtpVII.1, Os C6,OsLTPd9, OsLtpVI.1,OsLTP1.17, b1, LTP2, OsLtpI.17,OsLTP1.3, OsLtpI.3,OsLTP1.19, OsLtpI.19,OsLTP1.9, OsLtpI.9,OsLTP1.18, OsLTP1, nsLTP1, a15, OsLtpI.18, LTPC2, OsLTPC2,OsLTPd4, OsLtpIV.4 ,OsLTP1.15, OsLtp1.15, OsLTPL23, LTPL23,OsLTP2.9, OsLtpII.9, LtpII.9,OsLTPd7, OsLtpV.3,OsLTP2.7, OsLtpII.7,nsLTP2, OsnsLTP2, OsLTP2.3, Ltp2, OsLTP2, RLTP2, OsLtpII.3,OsLTPd2, OsLtpIV.2,YY1, OsLTPc2, OsLtpIII.2, LTP45,OsLTP1.4, OsLtpI.4,OsLTP1.11, OsLtpI.11,OsLTPd3, OsLtpIV.3,OsLTP2.8, OsLtpII.8,OsLTPd6, OsLtpV.2,OsLTP2.6, OsLtpII.6 ,OsLTP1.13, OsLtpI.13,OsLTP1.8, OsLtpI.8,OsLTP2.13, OsLtpII.13,OsLTP2.12, OsLtpII.12,OsLTP2.10, OsLtpII.10
40989	18182435	Joaqu?n Medina, Mar?a Luisa Ballesteros, Salinas J.	Phylogenetic and functional analysis of Arabidopsis RCI2 genes.	J. Exp. Bot.	58(15-16)	4333-46	2007	_,_,_,_,_,_,_,_,_,LTI6B,_,LTI6A	OsRCI2-4,OsRCI2-1,OsRCI2-9,OsRCI2-11, OSR8, osr8,OsRCI2-5,OsRCI2-7,OsRCI2-2,OsRCI2-3,OsRCI2-12,OsLti6b, Lti6b, OsLTI6B, OsRCI2-6,OsRCI2-8,OsLti6a, Lti6a, OsLTI6A, OsRCI2-10
40990	17033811	Vij S., Akhilesh K Tyagi	Genome-wide analysis of the stress associated protein (SAP) gene family containing A20/AN1 zinc-finger(s) in rice and their phylogenetic relationship with Arabidopsis.	Mol. Genet. Genomics	276(6)	565-75	2006	SAP13,SAP14,SAP12,SAP6,SAP5,SAP4,SAP18,SAP8,SAP11,SAP7,ZFP177,SAP16,SAP2,SAP10,SAP3,SAP17,SAP15,SAP1	OsSAP13,OsSAP14,OsSAP12,OsSAP6,OsSAP5,OsSAP4,OsSAP18,Osi-SAP8, OsiSAP8, OsSAP8, OsSAP1, SAP1,OsDOG, OsSAP11, DOG,OsSAP7, OsiSAP7,OsSAP9, SAP9, ZFP33,OsSAP16, ZOS7-05, OsZOS7-05,OsSAP2,OsSAP10,OsSAP3,OsSAP17,OsSAP15,Osi-SAP1, ISAP1, OsiSAP1, OSISAP1, OsSAP1
40991	19850038	Mitsuya S., Yokota Y., Fujiwara T., Mori N., Takabe T.	OsBADH1 is possibly involved in acetaldehyde oxidation in rice plant peroxisomes.	FEBS Lett.	583(22)	3625-9	2009	SK2(T)(SCL, FGR),BAD1	sk2(t)(scl, fgr), fgr, scl, BAD2, BADH2, sk2, OsBADH2, Badh2, badh2, Os2AP, BADH-2, OsALDH10A8, ALDH10A8 ,Badh1, badh1, BAD1, BADH1, OsBADH1, BADH, OsALDH10A5, ALDH10A5 
40992	20937895	Zemach A., M Yvonne Kim, Silva P., Jessica A Rodrigues, Dotson B., Matthew D Brooks, Zilberman D.	Local DNA hypomethylation activates genes in rice endosperm.	Proc. Natl. Acad. Sci. U.S.A.	107(43)	18729-34	2010	DNG704,TA2,DNG701,ROS1B,DML3B,DML3A	OsROS1D, ROS1D, ROS1d, ROS1D/DNG704, OsDNG704,ROS1A, ROS1a, DME1, OsROS1A, OsROS1, ROS1, mOsROS1, ROS1A/DNG702, DNG702, OsDNG702,ROS1C, ROS1c, Os ROS1C, DME2, OsDNG701, ROS1C/DNG701,OsROS1B,DML3b, OsDML3b,DML3a, OsDML3a
40993	0	Hongmei C.A.I., Zhiyong SONG, Xingming LIAN	Sequence and expression analysis of CCR4-associated factor 1 (OsCAF1) gene family in rice	J Plant Mol Biol Biotechnol	2(1)	47-64	2011	CAF1-14,CAF1-9,CAF1-7,CAF1-15,CAF1-17,CAF1-19,CAF1-1,CAF1-11,CAF1-3,CAF1-20,CAF1-10,CAF1-8,CAF1-5,CAF1-18,CAF1-2,CAF1-13,CAF1-6,CAF1-16,CAF1-21,CAF1-12	OsCAF1-14, OsCAF1F, CAF1F,OsCAF1-9, OsCAF1J, CAF1J,OsCAF1-7, OsCAF1L, CAF1L,OsCAF1-15, OsCAF1I, CAF1I,OsCAF1-17, OsCAF1M, CAF1M,OsCAF1-19, OsCAF1P, CAF1P,OsCAF1H, CAF1H, OsCAF1-1,OsCAF1-11,OsCAF1-3, OsCAF1-4, CAF1-4,OsCAF1-20, OsCAF1R, CAF1R,OsCAF1-10, OsCAF1C, CAF1C,OsCAF1-8, OsCAF1K, CAF1K,OsCAF1B, CAF1B, OsCAF1-5,OsCAF1-18, OsCAF1O, CAF1O,OsCAF1-2, OsCAF1Q, CAF1Q,OsCAF1G, CAF1G, OsCAF1-13,OsCAF1-6, OsCAF1D, CAF1D,OsCAF1-16, OsCAF1E, CAF1E,OsCAF1-21, OsCAF1N, CAF1N,OsCAF1A, CAF1A, OsCAF1-12
40994	20421740	Justin W Walley, Dior R Kelley, Savchenko T., Dehesh K.	Investigating the function of CAF1 deadenylases during plant stress responses.	Plant Signal Behav	5(7)	802-5	2010	CAF1-10,CAF1-16,CAF1-15,CAF1-7,CAF1-17,CAF1-9,CAF1-19,CAF1-1,CAF1-21,CAF1-18,CAF1-8,CAF1-14,CAF1-6,CAF1-13,CAF1-5,CAF1-12	OsCAF1-10, OsCAF1C, CAF1C,OsCAF1-16, OsCAF1E, CAF1E,OsCAF1-15, OsCAF1I, CAF1I,OsCAF1-7, OsCAF1L, CAF1L,OsCAF1-17, OsCAF1M, CAF1M,OsCAF1-9, OsCAF1J, CAF1J,OsCAF1-19, OsCAF1P, CAF1P,OsCAF1H, CAF1H, OsCAF1-1,OsCAF1-21, OsCAF1N, CAF1N,OsCAF1-18, OsCAF1O, CAF1O,OsCAF1-8, OsCAF1K, CAF1K,OsCAF1-14, OsCAF1F, CAF1F,OsCAF1-6, OsCAF1D, CAF1D,OsCAF1G, CAF1G, OsCAF1-13,OsCAF1B, CAF1B, OsCAF1-5,OsCAF1A, CAF1A, OsCAF1-12
40995	25194027	Tsuda K., Kurata N., Ohyanagi H., Hake S.	Genome-Wide Study of KNOX Regulatory Network Reveals Brassinosteroid Catabolic Genes Important for Shoot Meristem Function in Rice.	Plant Cell	26(9)	3488-500	2014	OSH1,CYP734A4,CYP734A5,CYP734A6,CYP734A2	OSKN1, Oskn1, OsKN1, OSH1/Oskn1, HB75,OsCYP734A4,,OsCYP734A6 ,OsCYP734A2
40996	25228344	Farquharson K.L.	A Rice KNOX Transcription Factor Represses Brassinosteroid Production in the Shoot Apical Meristem.	Plant Cell	26(9)	3469	2014	OSH1,CYP734A6,CYP734A4,CYP734A2	OSKN1, Oskn1, OsKN1, OSH1/Oskn1, HB75,OsCYP734A6 ,OsCYP734A4,OsCYP734A2
40997	17363107	Jae Hyung Ko, Bong Gyu Kim, Jeong Ho Kim, Kim H., Chae Eun Lim, Lim J., Lee C., Lim Y., Joong-Hoon Ahn	Four glucosyltransferases from rice: cDNA cloning, expression, and characterization.	J. Plant Physiol.	165(4)	435-44	2008	UGT707A3,UGT706D1,UGT706C1,_	OsUGT707A3,UGT, OsUGT706D1,OsUGT706C1,UGT709A4
40998	0	Hasthanasombut S., Paisarnwipatpong N., Triwitayakorn K., Kirdmanee C., Supaibulwatana K.	Expression of OsBADH1 gene in Indica rice (Oryza sativa L.) in correlation with salt, plasmolysis, temperature and light stresses	Plant Omics Journal	4(7)	400-407	2011	BAD1	Badh1, badh1, BAD1, BADH1, OsBADH1, BADH, OsALDH10A5, ALDH10A5 
40999	20590996	Liu Z., Bao W., Liang W., Yin J., Zhang D.	Identification of GAMYB-4 and analysis of the regulatory role of GAMYB in rice anther development.	J Integr Plant Biol	52(7)	670-8	2010	GAMYB,TDR,UDT1	OsGAMYB, GAM1, OsGAMyb, Os-MYBGA, Os GAMYB, OsMYBGA, MYBGA, Os2R_MYB15, 2R_MYB15 ,tdr, OsbHLH005, bHLH005, OsbHLH5, bhlh5, TDR1, OsTDR, OsTDR1, OsMYC5, MYC5,Udt1, bHLH164, OsUDT1, OsbHLH164 
41000	23025662	Guo J.X., Liu Y.G.	Molecular control of male reproductive development and pollen fertility in rice.	J Integr Plant Biol	54(12)	967-78, i	2012	RTS	RTS, RTS2
41001	24131983	Nakamura H., You-Lin Xue, Miyakawa T., Hou F., Hui-Min Qin, Fukui K., Shi X., Ito E., Ito S., Seung-Hyun Park, Miyauchi Y., Asano A., Totsuka N., Ueda T., Tanokura M., Asami T.	Molecular mechanism of strigolactone perception by DWARF14.	Nat Commun	4	2613	2013	D14,GID1	d14(d10), dwf13, d10, d14, D88, HTD2, OsHTD2, OsD14, qPPB3, D88/D14, HTD4,gid1, OsGID1, Thl, Os GID1
41002	21788985	Wang F., Xing Wang Deng	Plant ubiquitin-proteasome pathway and its role in gibberellin signaling.	Cell Res.	21(9)	1286-94	2011	GID1,SLR1	gid1, OsGID1, Thl, Os GID1,slr1-1, slr1, slr, GAI, OsGAI, OsSLR1, Os SLR1, OsRGA1, OsGRAS-18, OsGRAS-18, GRAS-18, GRAS18, SLR-1
41003	15491922	Laetitia Perfus-Barbeoch, Alan M Jones, Sarah M Assmann	Plant heterotrimeric G protein function: insights from Arabidopsis and rice mutants.	Curr. Opin. Plant Biol.	7(6)	719-31	2004	D1,RAC1	d1, GPA1, GA1, OsGA1, RGA1, dwf1, XA7, RGA, D1/RGA1, D89, TGW5, OsTGW5, SRG5, OsSRG5,OsRAC1, OsRac1, Os Rac1, Rac1, Os-Rac1
41004	17470057	Kong H., Lena L Landherr, Michael W Frohlich, Jim Leebens-Mack, Ma H., Claude W dePamphilis	Patterns of gene duplication in the plant SKP1 gene family in angiosperms: evidence for multiple mechanisms of rapid gene birth.	Plant J.	50(5)	873-85	2007	_,_,OSK1,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,OSK20	OSK4,OSK21,SKP1, OsSKP1,OSK28,OSK18,OSK30,OSK29,OSK23,OSK27,OSK11,OSK7,OSK13,OSK19,OSK3,OSK15,OSK2,OSK9,OSK5,OSK8,OSK12,OSK16,OSK22,OSK26,OSK25,OSK17,OSK6,OSK10,OSK14,SKP20, OsSKP20
41005	19120446	Ilg A., Beyer P., Salim Al-Babili	Characterization of the rice carotenoid cleavage dioxygenase 1 reveals a novel route for geranial biosynthesis.	FEBS J.	276(3)	736-47	2009	CCD1	OsCCD1
41006	19767386	Vallabhaneni R., Cynthia E Gallagher, Licciardello N., Abby J Cuttriss, Rena F Quinlan, Eleanore T Wurtzel	Metabolite sorting of a germplasm collection reveals the hydroxylase3 locus as a new target for maize provitamin A biofortification.	Plant Physiol.	151(3)	1635-45	2009	DSM2,_,HYD2	OsDSM2, OsBCH1, BCH1, OsHYD3, HYD3,OsBCH2, BCH2, OsHYD1, HYD1,OsBCH3, BCH3, OsHYD2, OsBCH2, BCH2
41007	21828105	Qin F., Shinozaki K., Kazuko Yamaguchi-Shinozaki	Achievements and challenges in understanding plant abiotic stress responses and tolerance.	Plant Cell Physiol.	52(9)	1569-82	2011	ONAC2,NAC5,NAC6	SNAC1, snac1, OsNAC9, ONAC002, ONAC2, ONAC033, ONAC33, ONAC043, ONAC43, ONAC044, ONAC44, OsNAC19, NAC19, SNAC1/ONAC002, OsSNAC1, OsNAC9, OsNAC1,OsNAC5, NAC71, ONAC071, ONAC009, ONAC9, ONAC020, ONAC20, OnNAC5*, OnNAC5, OsNAC5/ONAC009,OsNAC6, ONAC048, NAC48, SNAC2, SNAC2/OsNAC6, OsNAC6/ONAC048, OsSNAC2, SNAC-2, OsSNAC-2, OsNAC2
41008	0	Okada T., Nakayama H., Shinmyo A., Yoshida K.	Expression of OsHAK genes encoding potassium ion transporters in rice	Plant Biotechnology	25(3)	241-245	2008	HAK7,LCS,HAK4,HAK16,HAK10,HAK3,HAK2,HAK9,HAK13,HAK14,HAK8,HAK5,HAK6,HAK17,HAK11,HAK15,HAK12	OsHAK7,OsHAK1, HAK1,OsHAK4,OsHAK16,OsHAK10,OsHAK3,OsHAK2,OsHAK9,OsHAK13,OsHAK14,OsHAK8,OsHAK5, FCO13, OsFCO13,OsHAK6, OsSTA42,OsHAK17, FCO3, FCO4,OsHAK11,OsHAK15,OsHAK12
41009	25230811	Gong P., Quan H., He C.	Targeting MAGO proteins with a peptide aptamer reinforces their essential roles in multiple rice developmental pathways.	Plant J.			2014	_,_,_,_	OsMAGO1, MAGO1,OsY14b, Y14b,OsY14a, Y14a ,mago, OsMAGO2, MAGO2 
41010	19682292	Yong-Mei Bi, Kant S., Clarke J., Clark J., Gidda S., Ming F., Xu J., Rochon A., Barry J Shelp, Hao L., Zhao R., Robert T Mullen, Zhu T., Steven J Rothstein	Increased nitrogen-use efficiency in transgenic rice plants over-expressing a nitrogen-responsive early nodulin gene identified from rice expression profiling.	Plant Cell Environ.	32(12)	1749-60	2009	ENOD93A,_,_,_,_,_	OsENOD93a,OsENOD93, ENOD93,UDP-GT, OsENOD93-1,OsENOD93,OsENOD93,OsENOD93
41011	25535376	Xian Jun Song, Kuroha T., Ayano M., Furuta T., Nagai K., Komeda N., Segami S., Miura K., Ogawa D., Kamura T., Suzuki T., Higashiyama T., Yamasaki M., Mori H., Inukai Y., Wu J., Kitano H., Sakakibara H., Steven E Jacobsen, Ashikari M.	Rare allele of a previously unidentified histone H4 acetyltransferase enhances grain weight, yield, and plant biomass in rice.	Proc. Natl. Acad. Sci. U.S.A.	112(1)	76-81	2015	GW6A	OsglHAT1, glHAT1, GW6a, OsGW6a, OsGNAT1, GNAT1
41012	25368893	Zeigler R.	Perspective: Time to unleash rice.	Nature	514(7524)	S66	2014		
41013	25368886	Elert E.	Rice by the numbers: A good grain.	Nature	514(7524)	S50-1	2014		
41014	25368891	Sohn E.	Contamination: The toxic side of rice.	Nature	514(7524)	S62-3	2014		
41015	25368890	Cheung F.	Yield: The search for the rice of the future.	Nature	514(7524)	S60-1	2014		
41016	25368885	Woolston C.	Rice.	Nature	514(7524)	S49	2014		
41017	25301663	Singh I., Shah K.	Exogenous application of methyl jasmonate lowers the effect of cadmium-induced oxidative injury in rice seedlings.	Phytochemistry			2014		
41018	25278554	Zhang L., Tang D., Luo Q., Chen X., Wang H., Li Y., Cheng Z.	Crossover Formation During Rice Meiosis Relies on Interaction of OsMSH4 and OsMSH5.	Genetics			2014	ZIP4,RMC1,_,MSH5,HEI10	OsZIP4, SPO22, OsSPO22,MER3, mer3, OsMER3, RCK, OsRCK, Os-MER3,OsMSH4, MSH4,OsMSH5,HEI10A, HEI10B, OsHEI10,  OsRING434, RING434
41019	25352666	Wu S., Lee C.M., Hayashi T., Price S., Divol F., Henry S., Pauluzzi G., Perin C., Gallagher K.L.	A plausible mechanism, based upon SHORT-ROOT movement, for regulating the number of cortex cell layers in roots.	Proc. Natl. Acad. Sci. U.S.A.			2014	SHR1,SCR,SCR1,SHR2	OsSHR1, OsGRAS-38, OsGRAS38, GRAS-38, GRAS38, DLN189, OsDLN189, OsSHR, SHR,OsSCR, OsSCR2, SCR2, OsGRAS-51, OsGRAS51, GRAS-51, GRAS51,OsSCR1, OsSCR, OsGRAS-41, OsGRAS41, GRAS-41, GRAS41,OsSHR2, OsGRAS-15, OsGRAS15, GRAS-15, GRAS15
41020	25368889	Callaway E.	Domestication: The birth of rice.	Nature	514(7524)	S58-9	2014		
41021	25331872	Song W.Y., Yamaki T., Yamaji N., Ko D., Jung K.H., Fujii-Kashino M., An G., Martinoia E., Lee Y., Ma J.F.	A rice ABC transporter, OsABCC1, reduces arsenic accumulation in the grain.	Proc. Natl. Acad. Sci. U.S.A.	111(44)	15699-704	2014	MRP1	OsABCC1, ABCC1, OsABCC1-1, OsABCC1-2, OsMRP1
41022	25368887	Dayton L.	Agribiotechnology: Blue-sky rice.	Nature	514(7524)	S52-4	2014		
41023	25368197	Zhang Q.J., Zhu T., Xia E.H., Shi C., Liu Y.L., Zhang Y., Liu Y., Jiang W.K., Zhao Y.J., Mao S.Y., Zhang L.P., Huang H., Jiao J.Y., Xu P.Z., Yao Q.Y., Zeng F.C., Yang L.L., Gao J., Tao D.Y., Wang Y.J., Bennetzen J.L., Gao L.Z.	Rapid diversification of five Oryza AA genomes associated with rice adaptation.	Proc. Natl. Acad. Sci. U.S.A.			2014	VIL3,PEP,WAF1,SDG725,CRY2,SEC5,_,PFT1,PDIL2-2,_,XTH27,_,_,_	OsVIL3, OsVIL4, VIL1,OsPEP, OsKH28, KH28,OsWAF1, waf1, waf1-1, waf1-2, HEN1, OsHEN1,OsSDG725, OsSET8, ASHH2,OsCRY2,OsSEC5,MOS3/SAR3, MOS3, SAR3, OsNucAP1, NUCAP1, OsNup96, Nup96,OsPFT1, OsMED25_1, MED25_1, OsMED25, MED25, OsvWA27, vWA27,PDIL2;2, OsPDIL2;2, OsPDIL2-2, OsTrx02, Trx02, OsTrx2, Trx2,LHY, LHY-like_chr.4, OsMYBR1, MYBR1, OsMYB1R35, MYB1R35,OsXTH27, XTH,OsERdj3A, TMS1,TAF6,PG
41024	25368149	Burney J., Ramanathan V.	Recent climate and air pollution impacts on Indian agriculture.	Proc. Natl. Acad. Sci. U.S.A.			2014		
41026	25378698	Gao H., Jin M., Zheng X.M., Chen J., Yuan D., Xin Y., Wang M., Huang D., Zhang Z., Zhou K., Sheng P., Ma J., Ma W., Deng H., Jiang L., Liu S., Wang H., Wu C., Yuan L., Wan J.	Days to heading 7, a major quantitative locus determining photoperiod sensitivity and regional adaptation in rice.	Proc. Natl. Acad. Sci. U.S.A.			2014	HD3A,HD2,RFT1,HD5,PHYB,GHD7,EF1	Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,Hd2(t), Hd2, qHD2(t), OsPRR37, Os-PRR37, PRR37, Prr4, OsPRR4, DTH7, Os DTH7, OsCCT28, CCT28, Ghd7.1, PRR37/Hd2, EH7-2, EH7-2/Hd2, Hd2/PRR37, PRR37-1a, PRR37-1b, PRR37-1c, PRR37-2a, PRR37- 2, HD7.2,FT-L 3, OsFTL3, FTL3, FT-L3, RFT, OsRFT1,Hd5(t)*, Hd5, qHD5, HAP3H, OsHAP3H, NF-YB, CBF-A, DTH8 , qHD5(t)*, Ghd8, Ghd8/DTH8, Lhd1, NF-YB11, OsNF-YB11, NFYB11, LH8, DTH8/Ghd8, RH8, DTH8/Ghd8/LHD1, CAR8, DTH8/Ghd8/ OsHAP3H, EF8, OsEF8,phyB, PHYB1, OsPHYB, OsphyB, OsYHB, YHB, OsPHYB/OsYHB,Ghd2, Ghd7, OsGhd7, OsCCT26, OsCMF8, OsI, Ghd7/Hd4, Hd4, EH7-1/Hd4, Ghd7-0a, EH7-1, EH7/Ghd7, EH7, OsEH7, GLW7.1, OsGLW7.1,Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 
41027	25433632	Joo S.H., Jang M.S., Kim M.K., Lee J.E., Kim S.K.	Biosynthetic relationship between C28-brassinosteroids and C29-brassinosteroids in rice (Oryza sativa) seedlings.	Phytochemistry			2014		
41028	25409830	Gray J.M., Frolking S., Kort E.A., Ray D.K., Kucharik C.J., Ramankutty N., Friedl M.A.	Direct human influence on atmospheric CO2 seasonality from increased cropland productivity.	Nature	515(7527)	398-401	2014		
41029	25480370	Chi W., He B., Manavski N., Mao J., Ji D., Lu C., Rochaix J.D., Meurer J., Zhang L.	RHON1 Mediates a Rho-Like Activity for Transcription Termination in Plastids of Arabidopsis thaliana.	Plant Cell			2014	BP73	BP-73, OsBP-73, Riaa1, Os-BP-73
41030	25512547	Schubert M., J?nsson H., Chang D., Der Sarkissian C., Ermini L., Ginolhac A., Albrechtsen A., Dupanloup I., Foucal A., Petersen B., Fumagalli M., Raghavan M., Seguin-Orlando A., Korneliussen T.S., Velazquez A.M., Stenderup J., Hoover C.A., Rubin C.J., Alfarhan A.H., Alquraishi S.A., Al-Rasheid KA., MacHugh DE., Kalbfleisch T., MacLeod JN., Rubin E.M., Sicheritz-Ponten T., Andersson L., Hofreiter M., Marques-Bonet T., Gilbert M.T., Nielsen R., Excoffier L., Willerslev E., Shapiro B., Orlando L.	Prehistoric genomes reveal the genetic foundation and cost of horse domestication.	Proc. Natl. Acad. Sci. U.S.A.	111(52)	E5661-9	2014		
41031	25489116		Correction for Gao et al., Days to heading 7, a major quantitative locus determining photoperiod sensitivity and regional adaptation in rice.	Proc. Natl. Acad. Sci. U.S.A.	111(51)	18399	2014		
41032	25316064	Lu Q., Ding S., Reiland S., R?diger A., Roschitzki B., Xue P., Gruissem W., Lu C., Baginsky S.	Identification and characterization of chloroplast casein kinase II from Oryza sativa (rice).	J. Exp. Bot.			2014		
41033	25358295	Lu F., Wang H., Wang S., Jiang W., Shan C., Li B., Yang J., Zhang S., Sun W.	Enhancement of innate immune system in monocot rice by transferring the dicotyledonous elongation factor Tu receptor.	J Integr Plant Biol			2014	PR10A	PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 
41034	25332358	Xia X., Fan X., Wei J., Feng H., Qu H., Xie D., Miller A.J., Xu G.	Rice nitrate transporter OsNPF2.4 functions in low-affinity acquisition and long-distance transport.	J. Exp. Bot.			2014	NPF2.4	OsNPF2.4, OsPTR2, PTR2
41035	25299339	Frahm G.E., Smith D.G., Kane A., Lorbetskie B., Cyr T.D., Girard M., Johnston M.J.	Determination of Supplier-to-Supplier and Lot-to-Lot Variability in Glycation of Recombinant Human Serum Albumin Expressed in Oryza sativa.	PLoS ONE	9(10)	e109893	2014		
41036	25315105	Deng M., Hu B., Xu L., Liu Y., Wang F., Zhao H., Wei X., Wang J., Yi K.	OsCYCP1;1, a PHO80 homologous protein, negatively regulates phosphate starvation signaling in the roots of rice (Oryza sativa L.).	Plant Mol. Biol.			2014	_,PHR2,CYCU3;1,CYCU4;4,_,CYCU4;3,CYCU2;1,CYCU1;1	OsCYCP4;3,OsPHR2, Os-PHR2,CycU3;1, CycU3;os;1, Orysa;CycU3;1, OsCYCP1;1,CycU4;4, CycU4;os;4, Orysa;CycU4;4, OsCYCP4;2,OsCYCP4;4,CycU4;3, CycU4;os;3, Orysa;CycU4;3, OsCYCP4;1, CyclinD4;1,CycU2;1, CycU2;os;1, Orysa;CycU2;1, OsCYCP3;1, CYC U2,CycU1;1, CycU1;os;1, Orysa;CycU1;1, OsCYCP2;1, CYCP2;1
41037	25372696	McAndrew R., Pruitt R.N., Kamita S.G., Pereira J.H., Majumdar D., Hammock B.D., Adams P.D., Ronald P.C.	Structure of the OsSERK2 leucine-rich repeat extracellular domain.	Acta Crystallogr. D Biol. Crystallogr.	70(Pt 11)	3080-6	2014	SERK1	OsSERK1, OsSERK2, OsBiSERK1, SERK2, BiSERK1, OsSerk2, OsBAK1-2
41038	25336568	Jung K.H., Kim S.R., Giong H.K., Nguyen M.X., Go H.J., An G.	Genome-wide Identification and Functional Analysis of Genes Expressed Ubiquitously in Rice.	Mol Plant			2014	RCA,HDA704,D1,DDM1A,_,GID1,TPC1,SLR1	OsRcaII, rca, rcaII, OsRcaI, RCAI, ME137, OsRCA1, RCA, RCAalpha, OsRCAalpha, OsRCAbeta,OsHDA704,d1, GPA1, GA1, OsGA1, RGA1, dwf1, XA7, RGA, D1/RGA1, D89, TGW5, OsTGW5, SRG5, OsSRG5,OsDDM1a, DDM1a, DLN225, OsDLN225, CHR746, OsCHR746,,gid1, OsGID1, Thl, Os GID1,OsTPC1, Tpc1, OsCC1, OsCL1 pore,slr1-1, slr1, slr, GAI, OsGAI, OsSLR1, Os SLR1, OsRGA1, OsGRAS-18, OsGRAS-18, GRAS-18, GRAS18, SLR-1
41039	25311683	Tuteja N., Tarique M., Tuteja R.	Rice SUV3 is a bidirectional helicase that binds both DNA and RNA.	BMC Plant Biol.	14(1)	283	2014	_	OsSUV3, SUV3
41040	25336684	Toyomasu T., Usui M., Sugawara C., Kanno Y., Sakai A., Takahashi H., Nakazono M., Kuroda M., Miyamoto K., Morimoto Y., Mitsuhashi W., Okada K., Yamaguchi S., Yamane H.	Transcripts of two ent-copalyl diphosphate synthase genes differentially localize in rice plants according to their distinct biological roles.	J. Exp. Bot.			2014	CPS1,CPS2	OsCPS1, OsCPS1ent, OsCPS, Os CPS1, OsTPS4, TPS4, TPS29, OsTPS29, OsCPS1-L, OsCPS1-S,OsCPS2, cps2, OsCPS2ent, CYC2, OsCyc2, OsCYC2, OsCPSL1, cpsl1, OsCyc2/OsCPS2, OsTPS7, Os-CPS2, TPS13, OsTPS13
41041	25335639	Ao Y., Li Z., Feng D., Xiong F., Liu J., Li J.F., Wang M., Wang J., Liu B., Wang H.B.	OsCERK1 and OsRLCK176 play important roles in peptidoglycan and chitin signaling in rice innate immunity.	Plant J.			2014	_,LYP6,CERK1,CEBIP,RLCK176	LYP4, Os-LYP4, OsLYP4,Os-LYP6, OsLYP6,OsCERK1, OsLysM-RLK9, Os-CERK1, Os-LysM-RLK9, OsLysMRLK9, OsCERK1/OsLYK9, OsLYK9, LYK9,CEBiP, Os-LYP1, LYP1, OsCEBiP,OsRLCK176
41042	25324400	Zhang J., Tang W., Huang Y., Niu X., Zhao Y., Han Y., Liu Y.	Down-regulation of a LBD-like gene, OsIG1, leads to occurrence of unusual double ovules and developmental abnormalities of various floral organs and megagametophyte in rice.	J. Exp. Bot.			2014	IG1,LHS1,EG1,MFO1	CRL1L3, CRLL3, OsCrll3, OsIG1, OsLBD1-9, LBD1-9, OsAS2, AS2,OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO, OsLHS1, OsLG3b, LG3b, qLGY3, LGY3, DLN80, OsDLN80, OLR, OsOLR, GW3p6, OsGW3p6, OsMADS1GW3p6, MADS1GW3p6, qLGY3/OsLG3b/GW3p6,eg1, GY1, OsEG1, OsGY1,OsMADS6, MADS6, OsMFO1
41043	25280591	Nawaz Z., Kakar K.U., Saand M.A., Shu Q.Y.	Cyclic nucleotide-gated ion channel gene family in rice, identification, characterization and experimental analysis of expression response to plant hormones, biotic and abiotic stresses.	BMC Genomics	15(1)	853	2014	CNGC1,CNGC11,CNGC12,CNGC16,CNGC3,CNGC7,CNGC9,CNGC8,CDS1,CNGC10,CNGC17,CNGC14,CNGC6,CNGC2,CNGC4,CNGC5	OsCNGC1, OsCNGC15, CNGC15,OsCNGC11, OsCNGC13, CNGC13, SSS1-D ,OsCNGC12, OsCNGC2, CNGC2 ,OsCNGC16, OsCNGC8, CNGC8, OsSTA273,OsCNGC3, OsCNGC7, CNGC7 ,OsCNGC7, OsCNGC14, CNGC14 ,OsCNGC9, OsCNGC16, CNGC16,OsCNGC8, OsCNGC6, CNGC6, OsCNGC9,OsCNGC15, CNGC15, OsCNGC9, CNGC9, OsCDS1,OsCNGC10, OsCNGC11, CNGC11,OsCNGC17, OsCNGC5, CNGC5, OsSTA282,OsCNGC14, OsCNGC3, CNGC3,OsCNGC6, OsCNGC4, CNGC4, OsSTA107,OsCNGC2, OsCNGC1, CNGC1,OsCNGC4, OsCNGC12, CNGC12 ,OsCNGC5, OsCNGC10, CNGC10  
41044	25283804	Chen M., Zhao Y., Zhuo C., Lu S., Guo Z.	Overexpression of a NF-YC transcription factor from bermudagrass confers tolerance to drought and salinity in transgenic rice.	Plant Biotechnol. J.			2014	LEA3-1,HAP5B,DHN1,HAP5A,NCED1,DREB1A,P5CS,DREB1B,HAP5G,HAP5C,RAB16A,DREB2A,PP2C6,HAP5F,HAP5D,HAP5E	OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3, OsLEA3A, LEA3A,OsHAP5B, NF-YC, CBF-C, OsNF-YC4, Os-NF-YC4, NF-YC4, NFYC4, OsNF-YC4-3, NF-YC4-3,LIP9, OsLIP9, lip9, DHN1, DIP1, OsDip1, OsLEA23, OsDhn1, COR410, OsLEA23/DIP1, DIP1/OsLEA23,OsHAP5A, NF-YC, CBF-C, OsNF-YC1, Os-NF-YC1, NF-YC1, NFYC1 , OsNF-YC4-2, NF-YC4-2,OSNCED1, OsNCED-1, OsNCED3, OsNced3, NCED3, OsNCED9, NCED9,OsDREB1A, Os DREB1A, CBF3, OsCBF3, OsDREB1A/OsCBF3, ERF24, OsERF24, OsERF024, OsERF#024, AP2/EREBP#114, AP2/EREBP114, OsDREBL,OsP5CS, P5CS1, OsP5CS1, OsALDH18B1, ALDH18B1, OsP5CS-1, P5CS-1,OsDREB1B, ERF31, OsERF031, OsERF#031, OsERF31, AP2/EREBP#169, AP2/EREBP169, OsDREB1b, OsDREB1C, OsCBF1, CBF1,OsHAP5G, NF-YC, CBF-C, OsNF-YC3, Os-NF-YC3, NF-YC3, NFYC3,OsHAP5C, NF-YC, CBF-C, OsNF-YC2, Os-NF-YC2, NF-YC2, NFYC2, OsNF-YC4-1, NF-YC4-1,Rab16A, rab21, RAB21, OsRab21, OsRAB21, OsRAB-21, OsRab16A, OsLEA29, rab16A, OsRAB16A,OsDREB2A, OsDREB2a, ERF40, OsERF#040, OsERF040, OsERF40, AP2/EREBP#167, AP2/EREBP167,OsPP2C06/OsABI2, OsPP2C06, OsPP2C6, OsABI2, OsPP10, ABI2, OsABIL1, ABIL1,OsHAP5F, NF-YC, CBF-C, OsNF-YC5, Os-NF-YC5, NF-YC5, NFYC5,OsHAP5D, NF-YC, CBF-C, OsNF-YC6, Os-NF-YC6, NF-YC6, NFYC6,OsHAP5E, NF-YC, CBF-C, OsNF-YC7, Os-NF-YC7, NF-YC7, NFYC7
41045	25311360	Zhao H., Ma T., Wang X., Deng Y., Ma H., Zhang R., Zhao J.	OsAUX1 controls lateral root initiation in rice (Oryza sativa L.).	Plant Cell Environ.			2014	RAU1,CYCD5;1,_,_,IAA23,IAA19,CYCD4;1	OsLAX1, OsRAU1, OsAUX1, LAX1, AUX1,CycD5;1, CycD5;os;1, Orysa;CycD5;1, Orysa;CYCD5;1, OsCYCD5;2, CycD5;2,OsCDKC;2, OsCDK2,Os_F0767, OsTIR1, TIR1, OsAFB4, AFB4 ,  OsFBL71, FBL71,OsIAA23,OsIAA19,CycD2;1, CYCD2-1, Orysa;CycD2;1, OsCYCD2;1, Orysa;CycD4;1, CycD4;1, CYCD4-1, Orysa;CYCD4;1, cycD, OsCYCD4;1,
41046	25270993	Liu S.J., Xu H.H., Wang W.Q., Li N., Wang W.P., M?ller IM., Song S.Q.	A proteomic analysis of rice seed germination as affected by high temperature and ABA treatment.	Physiol Plant			2014	GLUA3,TUBA1,WX1,SPDS1,_,_,CPA1	Glua3*, GLUA-3, GT22, GT3, Glu21, GluA-3, OsEnS-47, EnS-47, GLU3,OsTubA1, TubA1, OS-TubA3, TubA3,wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx,OsSPDS1, OsSPDS, SPDS,,OsEnS-59,OsCPA1
41047	25287121	Ogilvie H.A., Imin N., Djordjevic M.A.	Diversification of the C-TERMINALLY ENCODED PEPTIDE (CEP) gene family in angiosperms, and evolution of plant-family specific CEP genes.	BMC Genomics	15(1)	870	2014	CEP7,CEP1,CEP3,CEP5,CEP6,CEP2	OsCEP7, OsCEP7.1, CEP7.1,OsCEP1, OsCEP4, CEP4,OsCEP3, OsCEP6, CEP6,OsCEP5, OsCEP14, CEP14,OsCEP6, OsCEP6.1, CEP6.1, OsCEP13, CEP13,OsCEP2, OsCEP4, CEP4, OsCEP5, CEP5
41048	25318938	You J., Zong W., Hu H., Li X., Xiao J., Xiong L.	A SNAC1-regulated protein phosphatase gene OsPP18 modulates drought and oxidative stress tolerance through ABA-independent reactive oxygen species scavenging in rice.	Plant Physiol.			2014	ONAC2,PP2C10	SNAC1, snac1, OsNAC9, ONAC002, ONAC2, ONAC033, ONAC33, ONAC043, ONAC43, ONAC044, ONAC44, OsNAC19, NAC19, SNAC1/ONAC002, OsSNAC1, OsNAC9, OsNAC1,OsPP2C10, OsPP18
41049	25353370	Wu J., Zhu C., Pang J., Zhang X., Yang C., Xia G., Tian Y., He C.	OsLOL1, a C2C2-type zinc finger protein, interacts with OsbZIP58 to promote seed germination through the modulation of GA biosynthesis in Oryza sativa.	Plant J.			2014	RISBZ1,LSD1,D35,SODCC2	OsbZIP58, bZIP58, OsEnS-92, OsSMF1, SMF1, OsRISBZ1, RISBZ1/bZIP58,OsLSD1, OsLOL1, OsLSD1.1, LSD1.1,d35, d35(t), dwf30, OsKOL2, KOL2, KO2, OsKO2, OSKO2, KO, CYP701A, CYP701A6, Os KO2, OsKOL2/CYP701A,Cu/Zn-SOD, Cu/Zn- SOD, OsCu-ZnSOD2, Cu-ZnSOD2, OsSODB, OsSOD3, SodCc2, Os SodCc2, sodB, OsSodB, RSODB, OssodCc1, OsCSD1.1, CSD1.1, OsCDS1, OsSOD3-CU/Zn, SOD3-CU/Zn, CuZnSOD2, Cu/ZnSOD2, OsCu/ZnSOD2, OsCSD1, CSD1, CuZnSOD1, OsCuZnSOD2, OsCSD4, CSD4, OsCSD3, CSD3, Cu/Zn-SOD3
41050	25014590	Yokotani N., Tsuchida-Mayama T., Ichikawa H., Mitsuda N., Ohme-Takagi M., Kaku H., Minami E., Nishizawa Y.	OsNAC111, a blast disease-responsive transcription factor in rice, positively regulates the expression of defense-related genes.	Mol. Plant Microbe Interact.	27(10)	1027-34	2014	_,_,_,CPS4,_,RPP17,WAK112,GNS10,PR4B,WAK20,NAC17,_,GNS6,WRKY77,BG3,_,RLCK16,_,_,_,_,_,_,CHT3,WRKY19,CHT11,_,_	C10728, OsChib3a, Chib3a, OsPR31, PR31, PR8, OsPR8,,,OsCPS4, CYC1, OsCYC1, OsCyc1, cpsl3, OsCPSL3, OsCPSsyn, OsCyc1/OsCPS4, OsTPS15, Os-CPS4, TPS11, OsTPS11,OsPR2, PR2, OsGlu1, Glu1,Rpp17, FIERG1, OsERG1, OsERG1a, OsERG1b, OsC2DP8, C2DP8,OsWAK112, OsWAK112d ,Gns10, OsGns10,OsPR4b, OsPR-4b,OsWAK20,ONAC017, ONAC17, ONAC030, ONAC30, OsNAC111,OsPR1, OsPR1a, PR1a, PR1, OsPR1b, PR1b,Gns6, OsGns6, OsPR2, PR2,OsWRKY77, WRKY-77,PR2, OsPR2, OsBG3,RIR1b, Rir1b, OsRALF-30, OsRALF30, RALF-30, RALF30,OsRLCK16,,,DRR206,,,,Cht3*, Cht3, Cht-3, CH6, OsChia1c, CHI7, OsCHI11, CHI11, OsPR3, PR3,OsWRKY19,Cht11, PR3, OsCHT11,OsLP, PR-5, 14b,PR5
41051	25371504	Martinez D.E., Borniego M.L., Battchikova N., Aro E.M., Tyystj?rvi E., Guiam?t JJ.	SASP, a Senescence-Associated Subtilisin Protease, is involved in reproductive development and determination of silique number in Arabidopsis.	J. Exp. Bot.			2014	SUB22	OsSub22, OsSASP, SASP 
41052	25374002	Wang J., Shimada M., Kato Y., Kusada M., Nagaoka S.	Cholesterol-lowering effect of rice bran protein containing bile acid-binding proteins.	Biosci. Biotechnol. Biochem.		1-6	2014		
41053	25367381	Xiao N., Huang W.N., Li A.H., Gao Y., Li Y.H., Pan C.H., Ji H., Zhang X.X., Dai Y., Dai Z.Y., Chen J.M.	Fine mapping of the qLOP2 and qPSR2-1 loci associated with chilling stress tolerance of wild rice seedlings.	Theor. Appl. Genet.			2014	DREB1G	OsDREB1G, OsERF025, OsERF#025, OsERF25, ERF25, AP2/EREBP#138, AP2/EREBP138, OsDREB1I
41054	25398395	Abrah?m E., Yu P., Farkas I., Darula Z., Varga E., Luk?cs N., Ayaydin F., Medzihradszky K.F., Dombr?di V., Dudits D., Horv?th GV.	The B regulatory subunit of protein phosphatase 2A mediates the dephosphorylation of rice retinoblastoma-related protein-1.	Plant Mol. Biol.			2014	RB1,PIS1,PP2A-B''	Orysa;Rb1, OsRBR1, RBR1, OsRBR2, RBR2,Orysa;Rb2, RBR2, OsRBR1, RBR1, OsPIS1, RB2, OsRB2, RB1, OsRB1,OsPP2A-B''
41055	25385766	Wu F., Sheng P., Tan J., Chen X., Lu G., Ma W., Heng Y., Lin Q., Zhu S., Wang J., Wang J., Guo X., Zhang X., Lei C., Wan J.	Plasma membrane receptor-like kinase Leaf Panicle 2 acts downstream of the DROUGHT AND SALT TOLERANCE transcription factor to regulate drought sensitivity in rice.	J. Exp. Bot.			2014	DST,LP2,PIP2;3,PIP1A,PIP1;3	OsDST, DLN102, OsDLN102, HST1, OsHST1,OsLP2,OsPIP2;3, PIP2-3, OsPIP2-2,OsPIP1a, OsPIP1;1, PIP1a, RWC-1, PIP1-1, RWC1, OsPIP1-1, PIP1;1, PIP1-5,OsPIP1;3. PIP1.3, PIP1-3, RWC3, RWC-3, OsPIP1-3
41056	25388636	Ishikawa K., Yamaguchi K., Sakamoto K., Yoshimura S., Inoue K., Tsuge S., Kojima C., Kawasaki T.	Bacterial effector modulation of host E3 ligase activity suppresses PAMP-triggered immunity in rice.	Nat Commun	5	5430	2014	PUB45,PUB46,PUB44	OsPUB45, P3IP1, OsP3IP1,  OsPUB45/P3IP1, PUB45/P3IP1,OsPUB46,OsPUB44
41057	25399351	Nguyen Q.N., Lee Y.S., Cho L.H., Jeong H.J., An G., Jung K.H.	Genome-wide identification and analysis of Catharanthus roseus RLK1-like kinases in rice.	Planta			2014	DRUS1,MTD2,CRRLK1L16,RLCK183,DRUS2,SE1,CRRLK1L12,CRRLK1L3,CRRLK1L4,CRRLK1L15,CRRLK1L1,GI,CRRLK1L6,CRRLK1L10,RLCK161,CRRLK1L14,RUPO,CRRLK1L7	OsCrRLK1L8, CrRLK1L8, FLR1, OsFLR1, OsMRLK11, MRLK11, OsDRUS1,OsMTD2, YK11, OsCrRLK1L11, CrRLK1L11, OsMRLK29, MRLK29, FLR6, OsFLR6,OsCrRLK1L16, CrRLK1L16, OsMRLK64, MRLK64, FLR11, OsFLR11,OsRLCK183, OsCrRLK1L2, CrRLK1L2, OsMRLK31, MRLK31, FLR4, OsFLR4,YK1, OsCrRLK1L5, CrRLK1L5, OsDRUS2, OsMRLK3, MRLK3, FLR2, OsFLR2,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, OsHd1,  Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,OsCrRLK1L12, CrRLK1L12, OsMRLK30, MRLK30, FLR5, OsFLR5,OsCrRLK1L3, CrRLK1L3, OsMRLK33, MRLK33, FLR3, OsFLR3,OsCrRLK1L4, CrRLK1L4, OsMRLK2, MRLK2, FLR14, OsFLR14,OsCrRLK1L15, CrRLK1L15, OsMRLK42, MRLK42, FLR7, OsFLR7,OsCrRLK1L1, CrRLK1L1, OsMRLK12, MRLK12, FLR10, OsFLR10,OsGI, Gi, Os-GI,OsCrRLK1L6, CrRLK1L6, OsMRLK9, MRLK9, FLR12, OsFLR12,OsCrRLK1L10, CrRLK1L10, OsMRLK20, MRLK20, FLR16, OsFLR16,OsRLCK161, OsCrRLK1L9, CrRLK1L9, OsMRLK19, MRLK19, FLR8, OsFLR8,OsCrRLK1L14, CrRLK1L14, OsMRLK41, MRLK41, FLR15, OsFLR15,OsRLCK193, RLCK193, OsCrRLK1L13, CrRLK1L13, OsMRLK40, MRLK40, FLR9, OsFLR9,OsCrRLK1L7, CrRLK1L7, OsMRLK10, MRLK10, FLR13, OsFLR13
41058	25402448	Fukayama H., Masumoto C., Taniguchi Y., Baba-Kasai A., Katoh Y., Ohkawa H., Miyao M.	Characterization and expression analyses of two plastidic enolase genes in rice.	Biosci. Biotechnol. Biochem.		1-8	2014	_,_,_,_,_,_	OsEno3, Eno3,OsEno6, Eno6,OsEno1, Eno1 ,OsEE1, OsENO1, ENO1, OsEno7, Eno7, OsEno4, Eno4,OsEno5, Eno5,OsEno2, Eno2
41059	25433856	Yang S., Hao D., Cong Y., Jin M., Su Y.	The rice OsAMT1;1 is a proton-independent feedback regulated ammonium transporter.	Plant Cell Rep.	34(2)	321-30	2015	AMT1;1	OsAMT1;1, OsAMT1:1, OsAMT1, AMT1-1, AMT1, OsAMT1p, OsAMT1-1, Osamt1-1, "OsAMT1,1", OsAMT1.1, AMT1.1, FCO12
41060	25430981	Lee G.W., Lee S., Chung M.S., Jeong Y.S., Chung B.Y.	Rice terpene synthase 20 (OsTPS20) plays an important role in producing terpene volatiles in response to abiotic stresses.	Protoplasma			2014	KS7,KS4,TPS18,CPS4,CPS1,TPS21,KSL10,TPS30,_,CPS2,TPS20,TPS17,TPS14,TPS24,_,TPS44,TPS3,KS2,TPS23,_,_,KS3,TPS12,TPS13,TPS22,_,TPS19,TPS2 ,KS8,KS5,KS1,TPS29,KS6	OsKS7, KS7, KSL7, OsKSL7, DTC1, OsDTC1, OsKS3, OsDTC1/OsKS7, OsTPS6, TPS6, TPS38, OsTPS38,OsKS4, KS4, KSL4, OsKSL4, DTS2, OsDTS2, OsTPS16, TPS16, TPS8, OsTPS8,OsTPS18, TPS23, OsTPS23,OsCPS4, CYC1, OsCYC1, OsCyc1, cpsl3, OsCPSL3, OsCPSsyn, OsCyc1/OsCPS4, OsTPS15, Os-CPS4, TPS11, OsTPS11,OsCPS1, OsCPS1ent, OsCPS, Os CPS1, OsTPS4, TPS4, TPS29, OsTPS29, OsCPS1-L, OsCPS1-S,OsTPS21, TPS1, OsTPS1,OsKSL10, KS10, OsKS10, OsTPS33, TPS33, TPS21, OsTPS21,TPS, OsTPS30, TPS26, OsTPS26,OsTPS13, TPS13, TPS3, OsTPS3,OsCPS2, cps2, OsCPS2ent, CYC2, OsCyc2, OsCYC2, OsCPSL1, cpsl1, OsCyc2/OsCPS2, OsTPS7, Os-CPS2, TPS13, OsTPS13,OsTPS20, TPS41, OsTPS41,OsTPS17, TPS32, OsTPS32,OsTPS14, TPS12, OsTPS12,OsTPS24,OsTPS11, TPS11, TPS28, OsTPS28,OsTPS1, TPS1, OsTPS44,OsTPS3, OsLIS, LIS, TPS22, OsTPS22,OsKS2, KSL2, OsKSL2, OsTPS27, TPS27, TPS2, OsTPS2,OsTPS23, TPS19, OsTPS19,OsTPS31, TPS31, OsSTPS, TPS46, tps46, OsTPS46, SSBis039, OsTPS10, TPS10, TPS7, OsTPS7,OsTPS10, TPS10, TPS36, OsTPS36,OsKS3, OSKS3, KS3, KSL3, OsKSL3, OsKS2, KS2, OsTPS25, TPS39, OsTPS39,OsTPS12, TPS34, OsTPS34,TPS3, OsSTP3, OsTPS28, TPS28, OsTPS13, TPS35, OsTPS35, OsECBS, ECBS,OsTPS22, TPS18, OsTPS18,OsTPS5, TPS5,OsTPS19, TPS15, OsTPS15,OsTPS2, TPS40, OsTPS40,OsKS8, KS8, KSL8, OsKSL8, DTC2, OsDTC2, OsDTC2/OsKS8, OsTPS32, TPS17, OsTPS17, KSL11, OsKSL11,OsKS5, KS5, KSL5, OsKSL5, KSL5i, OsKSL5i, KSL5j, OsKSL5j, KS6, OsKS6, OsTPS8, TPS45, OsTPS45,OsKS1, KS1, KS1A, KSL1, OsKSL1, OsKS1A, OsKS1B, OsKS1C, Ks1, Os KS1, OsTPS26, TPS6, OsTPS6,OsTPS29, OsCAS, CAS, OsTPS3, TPS3, TPS33, OsTPS33,OsKS6, KS6, KSL6, OsKSL6, KS5, OsKS5, OsTPS9, TPS9, TPS14, OsTPS14
41061	25426937	Song A., Li P., Fan F., Li Z., Liang Y.	The effect of Silicon on photosynthesis and expression of its relevant genes in rice (Oryza sativa L.) under high-zinc stress.	PLoS ONE	9(11)	e113782	2014	PETC,_,PSBY,PSAH,_,CP24	PetC, OsPETC,FNR, PetH, OsFNR,PsbY, OsPSBY,PsaH, GOS5, OsPSAH, OsGOS5,Lhca6, OsLhca6,Lhcb6, OsCP24, OsLhcb6
41062	25418842	Li F., Zhang M., Guo K., Hu Z., Zhang R., Feng Y., Yi X., Zou W., Wang L., Wu C., Tian J., Lu T., Xie G., Peng L.	High-level hemicellulosic arabinose predominately affects lignocellulose crystallinity for genetically enhancing both plant lodging resistance and biomass enzymatic digestibility in rice mutants.	Plant Biotechnol. J.			2014	GH9B1,IRX9,GH9B16,GH9B3,XAT2,IRX14	OsGH9B1,OsIRX9, OsGT43C/OsIRX9, OsGT43C,OsGH9B16,OsGH9B3,OsXAT2,OsIRX14, OsGT43J, GT43J, OsGT43J/OsIRX14
41063	25546583	Li Z., Su D., Lei B., Wang F., Geng W., Pan G., Cheng F.	Transcriptional profile of genes involved in ascorbate glutathione cycle in senescing leaves for an early senescence leaf (esl) rice mutant.	J. Plant Physiol.	176C	1-15	2014	APX1,_,DHAR1,APX7,MDHAR4,APX2,APX8,MDHAR3,APX4,APX3,MDHAR2,GR2,APX5,MDHAR5,_,APX6,MDHAR1,DHAR2,GR1	OsAPX1, APXa, OsAPXa, OsAPx01, OsAPx1, OSAPX1, APx1, cAPX, APX2, cAPXa, OscAPXa,ESL,OsDHAR1, DHAR, cytDHAR, OscytDHAR, OsDHAR,OsAPx7, OsAPx07, OSAPX7, APx7, sAPX,OsMDAR4, MDAR4, OsMDHAR4,OsAPX2, OsAPx02, APXb, OsAPx2, OSAPX2, APx2, cAPX, OsAPX1, APX1,OsAPx8, OsAPx08, OSAPX8, APx8, OsAPX8,MDHAR, OsMDHAR, OsMDAR3, MDAR3, OsMDHAR3, MDHAR1, OsMDHAR1,OsAPx4, OsAPx04, OSAPX4, APx4, pAPX4,OsAPx3, OsAPx03, OSAPX3, APx3, mAPX,OsMDAR2, OsMDHAR2, MDAR2, OsMDHAR4, MDHAR4,OsGR2, RGRC2, OsGR, OsGR3, OsRGRC2,OsAPx5, OsAPx05, OSAPX5, APx5,OsMDAR5, MDAR5, OsMDHAR5,OsGR1, GR1,OsAPx6, OsAPx06, OSAPX6, APx6,OsMDAR1, MDAR1, OsMDHAR1, OsMDHAR4-1, MDHAR4-1,OsDHAR2,OsGR1, OsGR2
41064	25449122	Shahpiri A., Soleimanifard I., Asadollahi M.A.	Functional characterization of a type 3 metallolthionein isoform (OsMTI-3a) from rice.	Int. J. Biol. Macromol.	73	154-9	2015	MTI3A	OsMT3a, MT3a, OsMT-I-3a, MT-I-3a, MTe, met2, OsMT3, MT3, OsMTI-3a, MTI-3a
41065	25578276	Dong X., Gao Y., Chen W., Wang W., Gong L., Liu X., Luo J.	Spatiotemporal distribution of phenolamides and the genetics of natural variation of hydroxycinnamoyl spermidine in rice.	Mol Plant	8(1)	111-21	2015	_,_	HSR201,
41066	25487714	Goto S., Sasakura-Shimoda F., Suetsugu M., Selvaraj M.G., Hayashi N., Yamazaki M., Ishitani M., Shimono M., Sugano S., Matsushita A., Tanabata T., Takatsuji H.	Development of disease-resistant rice by optimized expression of WRKY45.	Plant Biotechnol. J.			2014	WRKY45	OsWRKY45, OsWRKY45-1, OsWRKY45-2, WRKY45-1, WRKY45-2
41067	25505033	Muramatsu M., Suzuki R., Yamazaki T., Miyao M.	Comparison of Plant-Type Phosphoenolpyruvate Carboxylases from Rice: Identification of Two Plant-Specific Regulatory Regions of the Allosteric Enzyme.	Plant Cell Physiol.			2014	PPC2A,PPC2,PPC4,PPC2B,PEPC1	Osppc, OSPPC, Osppc2a, ppc2a,Osppc3, Osppc2, ppc3,ppc2,PEPC-2, Osppc4, ppc4,Osppc2b, ppc2b,PEPC-1, Osppc1, ppc1
41068	25486886	Zhou Y., Zhang C., Lin J., Yang Y., Peng Y., Tang D., Zhao X., Zhu Y., Liu X.	Over-expression of a Glutamate dehydrogenase gene, MgGDH, from Magnaporthe grisea confers tolerance to dehydration stress in transgenic rice.	Planta			2014	RAB16A,LEA3-1	Rab16A, rab21, RAB21, OsRab21, OsRAB21, OsRAB-21, OsRab16A, OsLEA29, rab16A, OsRAB16A,OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3, OsLEA3A, LEA3A
41069	25515696	Tonnessen B.W., Manosalva P., Lang J.M., Baraoidan M., Bordeos A., Mauleon R., Oard J., Hulbert S., Leung H., Leach J.E.	Rice phenylalanine ammonia-lyase gene OsPAL4 is associated with broad spectrum disease resistance.	Plant Mol. Biol.			2014	_,PAL1,_,_,PAL,_,PAL1,_,_	PAL03, OsPAL8, PAL8 ,OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6,OsPAL04, PAL04, PAL, OsPAL7, PAL7,OsPAL05, PAL05, OsPAL3, PAL5, PAL3, OsPAL2;3, PAL2;3, OsPAL2-1, PAL2-1,OsPAL, OsPAL08, PAL2, GP-28, GP28, PAL08, OsPAL2, OsPAL8, PAL8,OsPAL03, OsPAL9, TAM1, OsTAM1, TAM, OsTAM,OsPAL, Pal1*, Pal1, PAL, Pal_1, PalI, PAL2, OsPAL01, PAL01, OSPAL, CP-1, GP-1, OsPAL1, PAL3, OsPAL3,OsPAL02, PAL02, OsPAL5, PAL5, OsPAL2. PAL2, OsPAL1,OsPAL07, OsPAL, PAL07, OsPAL6, PAL6, PAL1, OsPAL7, PAL7
41070	25543954	Lakra N., Nutan K.K., Das P., Anwar K., Singla-Pareek SL., Pareek A.	A nuclear-localized histone-gene binding protein from rice (OsHBP1b) functions in salinity and drought stress tolerance by maintaining chlorophyll content and improving the antioxidant machinery.	J. Plant Physiol.	176C	36-46	2014	BZIP3	OsbZIP03, OsbZIP3, OsHBP1b, HBP1b, OsTGA5, TGA5, OsTGA5/OsbZIP3
41071	25541357	Shaykholeslam Esfahani E., Shahpiri A.	Thioredoxin h isoforms from rice are differentially reduced by NADPH/thioredoxin or GSH/glutaredoxin systems.	Int. J. Biol. Macromol.	74C	243-248	2014	TRX20,NTRB,TRXH,NTRA,GRX,TRX1	OsTRXh9, TRXH9, OsTrx20, Trx20,OsNTRB, NtrB,trxh, Trx-H, OsTRXh1, TRXh1, OsTrxh1, Os1, OsTrx23, Trx23, RPP13-1,OsNTRA, NtrA,grx, OsGRX, OsGRX14, OsGrx9, OsGrxC2;2, GrxC2;2, OsGrxC2.2, GrxC2.2,OsTRXh7, TRXh7, OsTrx1, Trx1, OsTrx01, Trx01
41072	25496595	Takeuchi K., Noda N., Katayose Y., Mukai Y., Numa H., Yamada K., Someya N.	Rhizoxin analogs contribute to the biocontrol activity of newly isolated Pseudomonas strain.	Mol. Plant Microbe Interact.			2014		
41073	25404280	Li W., Yoshida A., Takahashi M., Maekawa M., Kojima M., Sakakibara H., Kyozuka J.	SAD1, an RNA polymerase?I subunit A34.5 of rice, interacts with Mediator and controls various aspects of plant development.	Plant J.	81(2)	282-91	2015	D14,_,_,_,MED7,_,_,_,_,_,_,_,_,_,_,_,DGS1	d14(d10), dwf13, d10, d14, D88, HTD2, OsHTD2, OsD14, qPPB3, D88/D14, HTD4,SAD1,OsMED4,OsTFIIF2-2, OsRAP30-2,OsMED7, OsMed7_1, Med7_1 ,OsMED19a,OsMED31a, MED31a, OsMed31_1, Med31_1 ,OsRPA49,OsTFIIF2-1, OsRAP30-1,SAD1L,OsMED19b, MED19b, OsMed19_1 , Med19_1 ,OsMED21, MED21, OsMed21_1, Med21_1,OsMED6, MED6, OsMed6_1, Med6_1 ,OsMED31b, MED31b, OsMed31_2, Med31_2 ,OsMED10, MED10, OsMed10_1, Med10_1 ,OsMED9, MED9, OsMED9_1, MED9_1 ,OsRPC53, RPC53, OsRPC4, RPC4, OsDGS1
41074	25496090	Suzuki K., Aoki N., Matsumura H., Okamura M., Ohsugi R., Shimono H.	Cooling water before panicle initiation increases chilling-induced male sterility and disables chilling-induced expression of genes encoding OsFKBP65 and heat shock proteins in rice spikelets.	Plant Cell Environ.			2014	CATA,HSFB2C,CIN3,APX1,DHAR1,SODCC2,DREB1B,CATB,APX2,NOE1,ABA8OX1,2R_MYB36 ,WRKY71,_,HSFC1B,_,SODCC1,RS5,PRR95,DHAR2,PCL1,HSP90.1,GIF1,DREB1A,FKBP62B,HSP18.0-CII	CATA1, Cat A1*, OSCAT-A, Cat2, CatA1, CAT-A, OsCatA, OsCAT, CAT, catA, OSCATA, OsCATc, OsCATA, OsCAT1A, CAT1, OsCAT1, OsCATC, OsCAT2,HSfB2c, OsHsfB2c, OsHsf-24, HSF24, OsHSF24 ,OSINV4, OsINV4, INV4, OsCIN3,OsAPX1, APXa, OsAPXa, OsAPx01, OsAPx1, OSAPX1, APx1, cAPX, APX2, cAPXa, OscAPXa,OsDHAR1, DHAR, cytDHAR, OscytDHAR, OsDHAR,Cu/Zn-SOD, Cu/Zn- SOD, OsCu-ZnSOD2, Cu-ZnSOD2, OsSODB, OsSOD3, SodCc2, Os SodCc2, sodB, OsSodB, RSODB, OssodCc1, OsCSD1.1, CSD1.1, OsCDS1, OsSOD3-CU/Zn, SOD3-CU/Zn, CuZnSOD2, Cu/ZnSOD2, OsCu/ZnSOD2, OsCSD1, CSD1, CuZnSOD1, OsCuZnSOD2, OsCSD4, CSD4, OsCSD3, CSD3, Cu/Zn-SOD3,OsDREB1B, ERF31, OsERF031, OsERF#031, OsERF31, AP2/EREBP#169, AP2/EREBP169, OsDREB1b, OsDREB1C, OsCBF1, CBF1,CatB, CAT-B, OsCatB, OsCATB, OsCAT1B, CAT1B, CAT2, OsCAT2,OsAPX2, OsAPx02, APXb, OsAPx2, OSAPX2, APx2, cAPX, OsAPX1, APX1,CATC, OsCat, OsCatC, OsCATC, OsNOE1, noe1, catC, OsCATC, CAT3, OsCAT3, LLM9428, OsLLM9428,OsABA8OX1, CYP707A5, OsCYP707A5, ABA8ox1, OsABA8ox1, OsABA8'OH1, ABA8'OH1 ,OsMYB2, MYB2, Os2R_MYB36 ,OsWRKY71, WRKY-71,OsMYB4, Osmyb4, OsMyb4, MYB4, OsMYB55, MYB55, OsMyb8, MYB8, OsMYB13b, MYB13b, OsMYB15, MYB15, Os2R_MYB46, 2R_MYB46,OsHsfC1b, HsfC1b, HSF03, OsHsf-03, OsHSF3, HSF3, HSF11,  rHsf11,OsDjC45,sodCc1, SODCC.1, sodA, RSODA, OsSOD1, OsCSD2, OsSodA, SodCc2, OsSODA1, SODCc1-Cu/Zn, OsCu/Zn-SOD2, Cu/Zn-SOD2, OsCSD1.2, CSD1.2, OsSODCc1-Cu/Zn, SODCc1-Cu/Zn, CuZnSOD1, Cu/ZnSOD1, OsCu/ZnSOD1, OsCSD4, CDS4, CuZnSOD4, OsCuZnSOD1, OsCSD1, CSD1, OsSOD2,OsRS5, OsRS1, RS1,OsPRR95, Os-PRR95, Prr2, OsPRR2, OsCCT33,OsDHAR2,OsPCL1, OsLUX, LUX, OsLVP2, LVP2,Hsp90, OsHSP90.1,gif1, CIN2, OsCIN2, OsGIF1, WB1, OsWB1, GIF1/OsCIN2,OsDREB1A, Os DREB1A, CBF3, OsCBF3, OsDREB1A/OsCBF3, ERF24, OsERF24, OsERF024, OsERF#024, AP2/EREBP#114, AP2/EREBP114, OsDREBL,OsFKBP62b, OsFKBP65, FKBP62b, FKBP65,OsHSP18.0-CII, Oshsp18.0-CII, OsHSP18.0, OsHSP18.2
41075	25429996	Ohashi M., Ishiyama K., Kusano M., Fukushima A., Kojima S., Hanada A., Kanno K., Hayakawa T., Seto Y., Kyozuka J., Yamaguchi S., Yamaya T.	Lack of cytosolic glutamine synthetase1;2 in vascular tissues of axillary buds causes severe reduction in their outgrowth and disorder of metabolic balance in rice seedlings.	Plant J.	81(2)	347-56	2015	GLT1,GLN1;2	OsGLT1, OsNADH-GOGAT1, NADH-GOGAT1, OsNADH-GOGAT, GOGAT, NADH-GOGAT, OsGOGAT1, GOGAT1, OsGLU1,OsGLN1;2, GSr, RGS8, OsGS1;2, GS1;2, GS1, OsGS1-2, GS1-2, OsGS1.2, GS1.2
41076	25523384	Kumari S., Joshi R., Singh K., Roy S., Tripathi A.K., Singh P., Singla-Pareek SL., Pareek A.	Expression of a cyclophilin OsCyp2-P isolated from a salt-tolerant landrace of rice in tobacco alleviates stress via ion homeostasis and limiting ROS accumulation.	Funct. Integr. Genomics			2014	CYP18-1,CYP19-4,CYP71,CYP18-2,CYP35,CYP20-1,CYP37,CYP65,CYP57,CYP63,CYP59A,CYP59B,CYP40B,CYP40A,CYP38,CYP19-3,CYP21-1,CYP28,CYP26-2,CYP23,CYP18-4,CYP95,CYP22,CYP20-3,CYP21-4,CYP124,CYP17,LRT2,CYP20-2	OsCYP18-1, OsCYP-12,OsCYP19-4, OsCYP-16, OsCYP19-3, OsCYP19-4.1, OsCYP19-4.2, OsCYP19-4.3, OsCYP19-4.4, OsCYP19-4.5, OsCYP19-4.6, OsCYP19-4.7, OsCYP19-4.8,OsCYP71, OsWD40-164, OsCYP-22, OsCYP71a, OsCYP71b,OsCYP18-2, OsCYP-23, OsCYP18-2a, OsCYP18-2b, OsCYP18-2c, SIP12 ,OsCYP35,OsCYP20-1, OsCYP-17, OsCYP20-1a, OsCYP20-1b,OsCYP37, OsCYP37a, OsCYP37b,OsCYP65, OsCYP-9,OsCYP57, OsCYP-3, OsCYP57a, OsCYP57b,OsCYP63, OsCYP-18,OsCYP59a, OsCYP-14, OsCYP59-1,OsCYP59b, OsCYP-15, OsCYP59-2,OsCYP40b, OsCYP-8, OsCYP40-2,OsCYP40a, OsCYP-13, OsCYP40-1a, OsCYP40-1b,OsCYP38, OsCYP38a, OsCYP38b,OsCYP19-3, Cyp1, OsCYP-25, OsCYP19-2a, OsCYP19-2b,OsCYP21-1, OsCYP-24,OsCYP28, OsCYP-21, OsCYP28a, OsCYP28b, OsCYP28c, OsCYP28d,OsCYP26-2, OsCYP-1, OsCYP26-1,OsCYP23, OsCYP-28, OsCYP23a, OsCYP23b, OsCYP23c,OsCYP18-4, OsCYP-26, OsCYP18-3,OsCYP95, OsCYP-6, OsCYP95a, OsCYP95b,OsCYP22, OsCYP-10,OsCYP20-3, OsCYP-5,OsCYP21-4, OsCYP-19, OsCYP21-2a, OsCYP21-2b, OsCYP21-2c,OsCYP124,OsCYP17, OsCYP-4,CYC2, cyc2*, cyc2, OsCYP2, Cyp2, OsCYP19-2, CYP19-2, OsCYP-2, OsCyp2-P, OsCyp2, OsCYP19-1, LRT2/OsCYP2, lrt2*, lrt2, Ppcti ,OsCYP20-2, OsCYP-11, OsNuCYP20-2
41077	25547963	Khare T., Kumar V., Kishor P.B.	Na(+) and Cl(-) ions show additive effects under NaCl stress on induction of oxidative stress and the responsive antioxidative defense in rice.	Protoplasma			2014	SODCC2,CATA,_	Cu/Zn-SOD, Cu/Zn- SOD, OsCu-ZnSOD2, Cu-ZnSOD2, OsSODB, OsSOD3, SodCc2, Os SodCc2, sodB, OsSodB, RSODB, OssodCc1, OsCSD1.1, CSD1.1, OsCDS1, OsSOD3-CU/Zn, SOD3-CU/Zn, CuZnSOD2, Cu/ZnSOD2, OsCu/ZnSOD2, OsCSD1, CSD1, CuZnSOD1, OsCuZnSOD2, OsCSD4, CSD4, OsCSD3, CSD3, Cu/Zn-SOD3,CATA1, Cat A1*, OSCAT-A, Cat2, CatA1, CAT-A, OsCatA, OsCAT, CAT, catA, OSCATA, OsCATc, OsCATA, OsCAT1A, CAT1, OsCAT1, OsCATC, OsCAT2,OsPRX1, POX1
41078	25267613	An J.H., Goo E., Kim H., Seo Y.S., Hwang I.	Bacterial quorum sensing and metabolic slowing in a cooperative population.	Proc. Natl. Acad. Sci. U.S.A.	111(41)	14912-7	2014		
41079	25271318	Wang Z., Ruan W., Shi J., Zhang L., Xiang D., Yang C., Li C., Wu Z., Liu Y., Yu Y., Shou H., Mo X., Mao C., Wu P.	Rice SPX1 and SPX2 inhibit phosphate starvation responses through interacting with PHR2 in a phosphate-dependent manner.	Proc. Natl. Acad. Sci. U.S.A.	111(41)	14953-8	2014	PHR2,SPX1,SPX2	OsPHR2, Os-PHR2,OsSPX1,OsSPX2
41080	25186728	Chen X., Cui Z., Fan M., Vitousek P., Zhao M., Ma W., Wang Z., Zhang W., Yan X., Yang J., Deng X., Gao Q., Zhang Q., Guo S., Ren J., Li S., Ye Y., Wang Z., Huang J., Tang Q., Sun Y., Peng X., Zhang J., He M., Zhu Y., Xue J., Wang G., Wu L., An N., Wu L., Ma L., Zhang W., Zhang F.	Producing more grain with lower environmental costs.	Nature	514(7523)	486-9	2014		
41081	25212867	Le Thi H., Lin C.H., Smeda R.J., Leigh N.D., Wycoff W.G., Fritschi F.B.	Isolation and identification of an allelopathic phenylethylamine in rice.	Phytochemistry			2014		
41082	25253891	AbouHaidar MG., Venkataraman S., Golshani A., Liu B., Ahmad T.	Novel coding, translation, and gene expression of a replicating covalently closed circular RNA of 220 nt.	Proc. Natl. Acad. Sci. U.S.A.	111(40)	14542-7	2014		
41083	25162803	Purugganan M.D.	An evolutionary genomic tale of two rice species.	Nat. Genet.	46(9)	931-2	2014	SH1,RC,QSH1,SH4,DEP1,SD1,SE1	YAB2, OsYAB2, OsSh1, Sh1, OsFIL2, OsSH1, Osh1,Rc, OsbHLH017, OsbHLH17, SD7-1, qSD7-1/qPC7, OsGL3C, GL3C,qSH1, qsh1, qSH-1, RIL1, OsRIL1 ,sh4, SH4, SHAT2, SHA1, qSH4, QSH4, OsSh4, Sh4, Osh4, OsMSL23, MSL23,OsDEP1, EP, qPE9-1, DN1, DEP1/DN1/qPE9-1, qNGR9, qDEP1, RGG4/DEP1/DN1/qPE9-1/OsGGC3, RGG4, OsDN1, OsGGC3, GGC3,sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2, OsPHQ1, OsPHq1, PHq1,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, OsHd1,  Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21
41084	25218040	Cho H.Y., Lee C., Hwang S.G., Park Y.C., Lim H.L., Jang C.S.	Overexpression of the OsChI1 gene, encoding a putative laccase precursor, increases tolerance to drought and salinity stress in transgenic Arabidopsis.	Gene	552(1)	98-105	2014	LAC18,LAC26,LAC25,LAC21,LAC2,LAC1,LAC15,LAC27,LAC5,LAC19,LAC3,LAC8,LAC4,LAC12,LAC9,LAC10,LAC14	OsLAC18,OsLAC26,OsLAC25,OsLAC21,OsLAC2,OsLAC1 ,OsLAC, LAC, OsLAC15, OsLAC13, LAC13 ,OsLAC27,OsLAC5,OsLAC19,OsChI1, ChI1, OsLAC3,OsLAC8, OsLAC7, LAC7,Oslacc, lacc, OsLAC4, OsLAC17, LAC17,OsLAC12,OsLAC9,OsLAC10,OsLAC14, OsLAC13, LAC13
41085	25236158	Wang L., Yu C., Chen C., He C., Zhu Y., Huang W.	Identification of rice Di19 family reveals OsDi19-4 involved in drought resistance.	Plant Cell Rep.			2014	CATA,_,_,DI19-1,SODCC2,_,_,SODCC1,DI19-5,_	CATA1, Cat A1*, OSCAT-A, Cat2, CatA1, CAT-A, OsCatA, OsCAT, CAT, catA, OSCATA, OsCATc, OsCATA, OsCAT1A, CAT1, OsCAT1, OsCATC, OsCAT2,OsDi19-4, Di19-4,OsDi19-6,OsDi19-1,Cu/Zn-SOD, Cu/Zn- SOD, OsCu-ZnSOD2, Cu-ZnSOD2, OsSODB, OsSOD3, SodCc2, Os SodCc2, sodB, OsSodB, RSODB, OssodCc1, OsCSD1.1, CSD1.1, OsCDS1, OsSOD3-CU/Zn, SOD3-CU/Zn, CuZnSOD2, Cu/ZnSOD2, OsCu/ZnSOD2, OsCSD1, CSD1, CuZnSOD1, OsCuZnSOD2, OsCSD4, CSD4, OsCSD3, CSD3, Cu/Zn-SOD3,OsDi19-2,OsDi19-7,sodCc1, SODCC.1, sodA, RSODA, OsSOD1, OsCSD2, OsSodA, SodCc2, OsSODA1, SODCc1-Cu/Zn, OsCu/Zn-SOD2, Cu/Zn-SOD2, OsCSD1.2, CSD1.2, OsSODCc1-Cu/Zn, SODCc1-Cu/Zn, CuZnSOD1, Cu/ZnSOD1, OsCu/ZnSOD1, OsCSD4, CDS4, CuZnSOD4, OsCuZnSOD1, OsCSD1, CSD1, OsSOD2,OsDi19-5,OsDi19-3
41086	25309566	Fujino K., Obara M., Sato K.	Diversification of the plant-specific hybrid glycine-rich protein (HyGRP) genes in cereals.	Front Plant Sci	5	489	2014	HYPRP2,HYPRP20,HYPRP12,HYPRP21,HYPRP19,_,HYPRP11,HYPRP18,_,HYPRP16,HYPRP6,HYPRP9,_,HYPRP17,HYPRP5,HYPRP7,HYPRP4,HYPRP15,HYPRP8,HYPRP10,_	OsHyPRP02, HyP/GRP02, OsHyPRP2, HyP/GRP2,HyPRP2,OsHyPRP20, HyP/GRP20, OsHyPRP41, HyPRP41,OsHyPRP12, HyP/GRP12, OsHyPRP32, HyPRP32,OsHyPRP21, HyP/GRP21, OsHyPRP42, HyPRP42,OsHyPRP19, HyP/GRP19, OsHyPRP40, HyPRP40,RCc3, OsHyPRP01, HyP/GRP01, OsHyPRP1, HyP/GRP1, OsRcc3, HyPRP1,OsHyPRP11, HyP/GRP11, OsHyPRP31, HyPRP31,OsHyPRP18, HyP/GRP18, OsHyPRP39, HyPRP39,OsHyPRP03, HyP/GRP03, OsHyPRP3, HyP/GRP3, LTP1,OsHyPRP16, HyP/GRP16, OsHyPRP37, HyPRP37,OsHyPRP06, HyP/GRP06, OsHyPRP6, HyP/GRP6, OsHyPRP12, HyPRP12,OsHyPRP09, HyP/GRP09, OsHyPRP9, HyP/GRP9, OsHyPRP29, HyPRP29,RCc2, RCg2, OsHyPRP13, HyP/GRP13, HyPRP13, OsRCg2, OsHyPRP35, HyPRP35,OsHyPRP17, HyP/GRP17, OsHyPRP38, HyPRP38,qLTG-3-1(t), qLTG3-1, OsHyPRP05, OsHyPRP5, HyP/GRP05, HyP/GRP5,OsHyPRP07, HyP/GRP07, OsHyPRP7, HyP/GRP7, OsHyPRP13, HyPRP13,OsHyPRP04, HyP/GRP04, OsHyPRP4, HyP/GRP4,OsHyPRP15, HyP/GRP15, OsHyPRP36, HyPRP36,OsHyPRP08, HyP/GRP08, OsHyPRP8, HyP/GRP8, OsHyPRP14, HyPRP14,OsHyPRP10, HyP/GRP10, OsHyPRP30, HyPRP30,OsHyPRP14, HyP/GRP14
41087	25209128	Peng B., Kong H., Li Y., Wang L., Zhong M., Sun L., Gao G., Zhang Q., Luo L., Wang G., Xie W., Chen J., Yao W., Peng Y., Lei L., Lian X., Xiao J., Xu C., Li X., He Y.	OsAAP6 functions as an important regulator of grain protein content and nutritional quality in rice.	Nat Commun	5	4847	2014	AAP10D	OsAAP10D, OsAAP6, AAP6, qPC1
41088	25238655	H?ller S., Meyer A., Frei M.	Zinc deficiency differentially affects redox homeostasis of rice genotypes contrasting in ascorbate level.	J. Plant Physiol.	171(18)	1748-1756	2014	_	OsGME1, GME1
41089	24964058	Kouzai Y., Mochizuki S., Nakajima K., Desaki Y., Hayafune M., Miyazaki H., Yokotani N., Ozawa K., Minami E., Kaku H., Shibuya N., Nishizawa Y.	Targeted gene disruption of OsCERK1 reveals its indispensable role in chitin perception and involvement in the peptidoglycan response and immunity in rice.	Mol. Plant Microbe Interact.	27(9)	975-82	2014	LYP6,CEBIP,CERK1,_	Os-LYP6, OsLYP6,CEBiP, Os-LYP1, LYP1, OsCEBiP,OsCERK1, OsLysM-RLK9, Os-CERK1, Os-LysM-RLK9, OsLysMRLK9, OsCERK1/OsLYK9, OsLYK9, LYK9,LYP4, Os-LYP4, OsLYP4
41090	25184028	Sahoo R.K., Ansari M.W., Tuteja R., Tuteja N.	OsSUV3 transgenic rice maintains higher endogenous levels of plant hormones that mitigates adverse effects of salinity and sustains crop productivity.	Rice (N Y)	7(1)	17	2014	_	OsSUV3, SUV3
41091	25255828	Xu F., Fang J., Ou S., Gao S., Zhang F., DU L., Xiao Y., Wang H., Sun X., Chu J., Wang G., Chu C.	Variations in CYP78A13 coding region influence grain size and yield in rice.	Plant Cell Environ.			2014	KN,CYCA1;1,CDKB2;1 ,CYCD4;1,_,GE1,CYCA3;2,_,GH3-8,H1,CYCA2;1,GL3.2,CYCB2;1,MAD2,MCM3,MCM4,CYCB2;2	OsKN, OsSYP111, SYP111,CycA1;1, CycA1;os;1, Orysa;CycA1;1, CYCA2.3, OscycA1;1, CYCA1-1, OsCYCA1-1,Orysa;CDKB2;1, OsCDKB2;1, cdc2Os3, Oscdc20s-3, cdc20s-3, Orysa;CDKB;2, CYCB2.1, CDKB-2, OsCDKB-2,CycD2;1, CYCD2-1, Orysa;CycD2;1, OsCYCD2;1, Orysa;CycD4;1, CycD4;1, CYCD4-1, Orysa;CYCD4;1, cycD, OsCYCD4;1,,MAPK, MAPK6,ge1, ge, CYP78A13, OsCYP78A13, GE, BG2, GES, OsGE/CYP78B5, CYP78B5, OsCYP78B5,OsCYCA3;2, CycA3;2, CycA3;os;2, Orysa;CycA3;2, CYCA2.1, CYCA2;1,CAK1, MAT1, OsCAK1, OsMAT1, CDKA1, OsCDKA1,OsGH3-8, OsMGH3, OsGH3.8, GH3.8, OsGH3-2,OsH1, OsHis1.1, His1.1,CycA2;1, CycA2;os;1, Orysa;CycA2;1, OsCYCA2;1, CYCA2.2,GL3.2,cycB2;1 (=cycOs1), cycB2;1, cycOs1, CycB2;1, CycOs1, CYCB2-1, CYCOS1, CycB2-Os1, CYCB2, CycB2;os;1, Orysa;CycB2;1, CycB2;os;1, OsCycB2;1,OsMAD2,OsMCM3,OsMCM4,cycB2;2 (=cycOs2), cycB2;2, cycOs2, CycB2;2, CycOs2, CYCB2-2, CYCOS2, CycB2-Os2, CYCB2, CycB2;os;2, OsCycB2;2, Orysa;CycB2;2, OsCYCOS2, Os;cycB2;2, CYCB2.2, OsCYCB2.2
41092	25255693	Cheng Q., Zhou Y., Liu Z., Zhang L., Song G., Guo Z., Wang W., Qu X., Zhu Y., Yang D.	An alternatively spliced heat shock transcription factor, OsHSFA2dI, functions in the heat stress-induced UNFOLDED PROTEIN RESPONSE in rice.	Plant Biol (Stuttg)			2014	BZIP50,HSFA2D,IRE1,BIP1,BZIP39,O3	OsbZIP60, bZIP50, OsbZIP50, OsbZIP74, bZIP74, OsbZIP50-S,HSfA2d, OsHsfA2d, OsHsf-08, rHsf7, HSF08, OsHSF8, HSF8, HSF7, OsHSF7, OsHSFA2dI, OsHSFA2dII, OsHSFA2dIII, OsHsfA6b, HsfA6b, OsHsf2d, Hsf2d,OsIRE1, OsIre1,OsBiP1, BiP1, BiP, Bip3, OsBiP3, BIP1/OsBIP3, OsMed37_2, Med37_2 ,OsbZIP39, bZIP39, DLN138, OsDLN138,OsbZIP60, bZIP60
41093	25261533	Sumiyoshi M., Inamura T., Nakamura A., Aohara T., Ishii T., Satoh S., Iwai H.	UDP-arabinopyranose Mutase 3 is Required for pollen Wall Morphogenesis in Rice (Oryza sativa).	Plant Cell Physiol.			2014	UAM2,UAM3,UAM1	OsUAM2,OsUAM3,OsUAM1, RGP-1, Osgls1
41094	25259844	Nuruzzaman M., Kanno T., Amada R., Habu Y., Kasajima I., Ishikawa T., Kawai-Yamada M., Uchimiya H.	Does the Upstream Region Possessing MULE-Like Sequence in Rice Upregulate PsbS1 Gene Expression?	PLoS ONE	9(9)	e102742	2014	_,PSBS1,_,_,_,_,_,_,_,_	OsMULE-IS8,OsPsbS1, PsbS1, psbS, OsPSBS,OsMULE-JSS1,OsMULE-IS6,OsMULE-IS7,OsMULE-JS4,OsMULE-JS2,OsMULE-JS5,OsMULE-IS9,OsMULE-JS3
41095	25124817	Hayashi G., Shibato J., Imanaka T., Cho K., Kubo A., Kikuchi S., Satoh K., Kimura S., Ozawa S., Fukutani S., Endo S., Ichikawa K., Agrawal G.K., Shioda S., Fukumoto M., Rakwal R.	Unraveling low-level gamma radiation--responsive changes in expression of early and late genes in leaves of rice seedlings at litate Village, Fukushima.	J. Hered.	105(5)	723-38	2014	CHS,CATA,PAL1,_,ORC1,RPA1A,GPX1,CSB,_,GNS1,RBCL,PR10A,CPD,RBCS3,POX22.3,BURP16,_,APX2,ERF53,APX1,FEN1,PCNA,RPA1,AAI1	CHS*, Oschs, chs, chas, OsCHS, OsCHS1, CHS1, OsPKS26, PKS26, OsCHS24, CHS24, OsCHS27, CHS27,CATA1, Cat A1*, OSCAT-A, Cat2, CatA1, CAT-A, OsCatA, OsCAT, CAT, catA, OSCATA, OsCATc, OsCATA, OsCAT1A, CAT1, OsCAT1, OsCATC, OsCAT2,OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6,OsRPA32, RPA32, RPA2A ,OsORC1,OsRPA70a, OsRPA1a, RPA1a,OsGpx1, GPX1, OsGPx01, OsGPX1,OsCBS, CHR704, OsCHR704,prx41, OsPrx41, OsPOX8.1, POX8.1, OsPOD2, POD2,OsPR2, PR2, Gns1, OsGNS1, OsEGL1,rbcL, rbcA, OsrbcL,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,qUVR-10, OsPHR, PHR, OsCPD,RbcS3, OsRBCS3, OsRbcS3, rbcS ,POX22.3, OSPER, OsPOX, POX, Pir3, prx111, POX22, OsPOX1, POX1, OsPOX22.3, OsPR9, PR9,OsRD22, RD22, OsBURP16,OsPR1b, PR1b,OsAPX2, OsAPx02, APXb, OsAPx2, OSAPX2, APx2, cAPX, OsAPX1, APX1,OsERF#053, OsERF053, OsERF53, AP2/EREBP#134, AP2/EREBP134,OsAPX1, APXa, OsAPXa, OsAPx01, OsAPx1, OSAPX1, APx1, cAPX, APX2, cAPXa, OscAPXa,OsFEN1, OsFEN-1a, FEN-1,OsPCNA,OsRPA1, OsRPA70b, RPA70b,OsAAI1
41096	25266270	Zuo S., Zhou X., Chen M., Zhang S., Schwessinger B., Ruan D., Yuan C., Wang J., Chen X., Ronald P.C.	OsSERK1 regulates rice development but not immunity to Xanthomonas oryzae pv. oryzae or Magnaporthe oryzae.	J Integr Plant Biol			2014	SG2,D61,SERK1,XA21	OsSERK1, SERK1, OsBAK1, BAK1, OsSERK1/OsBAK1, OsBISERK1, BISERK1, OsSerk1, OsBAK1-1, 08SG2/OsBAK1, 08SG2, OsSG2,d61*, dwf42, d61, OsBRI1, OSBRI1, BRI1, Os BRI1, Osbri1, OsBRKq1, BRKq1,OsSERK1, OsSERK2, OsBiSERK1, SERK2, BiSERK1, OsSerk2, OsBAK1-2,Xa21*, Xa21, OsXA21
41097	25042706	Jha Y., Sablok G., Subbarao N., Sudhakar R., Fazil M.H., Subramanian R.B., Squartini A., Kumar S.	Bacterial-induced expression of RAB18 protein in Orzya sativa salinity stress and insights into molecular interaction with GTP ligand.	J. Mol. Recognit.	27(9)	521-7	2014	_,_	OsRab18B2, Q10RT8,RAB18
41098	25209982	Ramegowda V., Basu S., Krishnan A., Pereira A.	Rice GROWTH UNDER DROUGHT KINASE Is Required for Drought Tolerance and grain yield under Normal and Drought Stress Conditions.	Plant Physiol.	166(3)	1634-45	2014	HCI1,_,ICL,ERF3,S40-1 ,RLCK103,HAC1;2	OsHCI1, E3UL, OsRING206, RING206,RcbX, RbcX,OsEnS-107, EnS-107, OsI85, I85, OsICL, Osl85, l43, Osl43, OsL85,AP37, OsAP37, OsERF3, OsERF#075, OsERF075, OsERF75, ERF75, AP2/EREBP#004, AP2/EREBP4, OsBIERF2, BIERF2, DLN23, OsDLN23,Dfu584, Duf584, OsS40-1,GUDK, OsRLCK103,OsStr6, STR6, OsRhST, RLD, OsHAC1;2
41099	25203424	Wang Q., Liu Y., He J., Zheng X., Hu J., Liu Y., Dai H., Zhang Y., Wang B., Wu W., Gao H., Zhang Y., Tao X., Deng H., Yuan D., Jiang L., Zhang X., Guo X., Cheng X., Wu C., Wang H., Yuan L., Wan J.	STV11 encodes a sulphotransferase and confers durable resistance to rice stripe virus.	Nat Commun	5	4768	2014	_	STV11, OsSOT1
41100	25189534	Hufnagel B., de Sousa SM., Assis L., Guimaraes C.T., Leiser W., Azevedo G.C., Negri B., Larson B.G., Shaff J.E., Pastina M.M., Barros B.A., Weltzien E., Rattunde H.F., Viana J.H., Clark R.T., Falc?o A., Gazaffi R., Garcia A.A., Schaffert R.E., Kochian L.V., Magalhaes J.V.	Duplicate and Conquer: Multiple Homologs of PHOSPHORUS-STARVATION TOLERANCE1 Enhance Phosphorus Acquisition and Sorghum Performance on Low-Phosphorus Soils.	Plant Physiol.	166(2)	659-77	2014		
41101	25236969	Li L., Li Y., Song S., Deng H., Li N., Fu X., Chen G., Yuan L.	An anther development F-box (ADF) protein regulated by tapetum degeneration retardation (TDR) controls rice anther development.	Planta			2014	TDR,_	tdr, OsbHLH005, bHLH005, OsbHLH5, bhlh5, TDR1, OsTDR, OsTDR1, OsMYC5, MYC5,OsFbox509, Os_F0258, OsADF, ADF,  OsFBX345, FBX345
41102	0	Abe S.a, Sado A.b, Tanaka K.c, Kisugi T.c, Asami K.c, Ota S.c, Il Kim H.d, Yoneyama K.e, Xie X.a d e, Ohnishi T.f g, Seto Y.c, Yamaguchi S.c, Akiyama K.b, Yoneyama K.a d e, Nomura T.a d e	Carlactone is converted to carlactonoic acid by MAX1 in Arabidopsis and its methyl ester can directly interact with AtD14 in vitro	Proc. Natl. Acad. Sci. U.S.A.	111	18084-18089	2014		
41103	0	Pariasca-Tanaka J.a, Lorieux M.b, He C.c, McCouch S.d, Thomson M.J.e, Wissuwa M.a	Development of a SNP genotyping panel for detecting polymorphisms in Oryza glaberrima/O. sativa interspecific crosses	Euphytica	201	67-78	2014		
41104	0	Dietrich M.R.a, Ankeny R.A.b, Chen P.M.a	Publication trends in model organism research	Genetics	198	787-794	2014		
41105	25371548	Tong H.a, Xiao Y.a, Liu D.a, Gao S.a, Liu L.a, Yin Y.b, Jin Y.c, Qian Q.d, Chu C.a	Brassinosteroid regulates cell elongation by modulating gibberellin metabolism in ricec w open	Plant Cell	26	4376-4393	2014	DLT,D35,D11,GID2,BZR1,BRD1,EUI1,GNP1,BIN2,D18,D2,GID1,D61,GA2OX3,SLR1,SD1	dlt, OsGRAS32, OsDLT, OsDLT1, DTL1, OsGRAS-32, OsGRAS32, GRAS-32, GRAS32, SMOS2/DLT, SMOS2, OsSMOS2, OsGS6, GS6,d35, d35(t), dwf30, OsKOL2, KOL2, KO2, OsKO2, OSKO2, KO, CYP701A, CYP701A6, Os KO2, OsKOL2/CYP701A,d11(d8), dwf10, d8, D11/CYP724B1, d11, CYP724B1, GNS4, OsD11, PMM1, OsPMM1, PMM1/D11, NBG4, OsCPB1, CPB1, CPB1/D11,gid2, GF14e, OsGF14e, OsGID2, 14-3-3e,OsBZR1, Os BZR1, OsBES1-6, BES1-6,brd1, OsDWARF, DWARF, OsBR6ox, BR6ox, CYP85A1, CYP85A4, OsDWF, CYP85A1/OsDWARF, OsBRD1, OsCYP85A1,eui1, GA16,17ox, CYP714D1, EUI, CYP714D1/EUI, OsEUI, LG5, OsLG5,GA20OX1, OsGA20ox1, 20ox1, GA20ox-1, ga20ox1, Os20ox, C20OX2, OsGA20ox2, OsGA20ox-1, GA20ox1, OsGNP1,GSK2, Os GSK2, OsGSK2, Os BIN2, OsBIN2, BIN2/GSK2, OsSK22/OsGSK7, OsSK22, OsGSK7, SK22, GSK7, OsSK22/GSK2 ,d18-h  (d18-I, d18h), dwf15, d25, d18, d18-k, d18-AD, d18-dy, OsGA3ox2, ga3ox2, OsGA3OX2, GA3OX2, OsGA3ox-2, GA3ox-2, GA3ox1,d2, dwf2, CYP90D2, D2/CYP90D2, OsD2, SMG11, OsSMG11, D2/SMG11, OsD2a, OsD2b,gid1, OsGID1, Thl, Os GID1,d61*, dwf42, d61, OsBRI1, OSBRI1, BRI1, Os BRI1, Osbri1, OsBRKq1, BRKq1,OsGA2ox3, ga2ox 3, OsGA2ox-3, GA2ox3, GA2ox-3, GA2ox4,slr1-1, slr1, slr, GAI, OsGAI, OsSLR1, Os SLR1, OsRGA1, OsGRAS-18, OsGRAS-18, GRAS-18, GRAS18, SLR-1,sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2, OsPHQ1, OsPHq1, PHq1
41106	0	Chen S.a b c, Su J.b c, Han J.b c, Wang W.b c, Wang C.b c, Yang J.b c, Zeng L.b c, Wang X.a, Zhu X.b c, Yang C.a	Resistance spectrum assay and fine mapping of the blast resistance gene from a rice experimental line, IRBLta2-Re	Euphytica	195	209-216	2014	PITA,_	Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30, Trx30,Pita3(t)
41107	0	Li C.a, Dai Y.b d, Zhang S.X.c, Duan Y.H.b d, Liu M.L.b d, Chen L.Y.b d, Yao X.S.a d b d	Quinoid glycosides from Forsythia suspensa	Phytochemistry	104	105-113	2014		
41108	24211387	Shang Y.a, Zhang N.a, Zhu P.a, Luo Y.b, Huang K.a b, Tian W.b, Xu W.a b	Restriction enzyme cutting site distribution regularity for DNA looping technology	Gene	534	222-228	2014		
41109	0	Liang J.L.a b, Qu Y.P.b, Yang C.G.c, Ma X.D.b, Cao G.L.b, Zhao Z.W.a, Zhang S.Y.c, Zhang T.a, Han L.Z.b	Identification of QTLs associated with salt or alkaline tolerance at the seedling stage in rice under salt or alkaline stress	Euphytica	201	441-452	2014		
41110	0	Du H.a b, Huang M.b, Zhang Z.c, Cheng S.a	Genome-wide analysis of the AP2/ERF gene family in maize waterlogging stress response	Euphytica	198	115-126	2014		
41111	0	Han J.a, Li A.a, Liu H.b, Wen X.a, Zhao M.b, Korir N.B.a, Korir N.K.c, Wang C.a, Fang J.a	Computational identification of microRNAs in the strawberry (Fragaria~ananassa) genome sequence and validation of their precise sequences by miR-RACE	Gene	536	151-162	2014		
41112	0	Zhang F.a, Cui F.a, Zhang L.a, Wen X.a, Luo X.a, Zhou Y.a, Li X.b, Wan Y.b, Zhang J.a, Xie J.a	Development and identification of a introgression line with strong drought resistance at seedling stage derived from Oryza Sativa L. Mating with Oryza rufipogon Griff	Euphytica	200	1-7	2014		
41113	0	Zheng H., Zhao H., Liu H., Wang J., Zou D.	QTL analysis of Na+ and K+ concentrations in shoots and roots under NaCl stress based on linkage and association analysis in japonica rice	Euphytica	201	109-121	2014		
41114	0	Leng Y.a, Xue D.b, Yang Y.a, Hu S.a, Su Y.a, Huang L.a, Wang L.a, Zheng T.a, Zhang G.a, Hu J.a, Gao Z.a, Guo L.a, Qian Q.a, Zeng D.a	Mapping of QTLs for eating and cooking quality-related traits in rice (Oryza sativa L.)	Euphytica	197	99-108	2014		
41115	0	Qiu Y.a b, Guo J.a, Jing S.a, Zhu L.a, He G.a	Fine mapping of the rice brown planthopper resistance gene bph7 and characterization of its resistance in the 93-11 background	Euphytica	198	369-379	2014	BPH7	bph7
41116	0	Marathi B., Ramos J., Hechanova S.L., Oane R.H., Jena K.K.	SNP genotyping and characterization of pistil traits revealing a distinct phylogenetic relationship among the species of Oryza	Euphytica	201	131-148	2014		
41117	24569770	Lin C.R.a b, Lee K.W.b, Chen C.Y.b, Hong Y.F.b, Chen J.L.b, Lu C.A.c, Chen K.T.b, David Ho T.H.d e f, Yu S.M.a b e f	SnRK1A-interacting negative regulators modulate the nutrient starvation signaling sensor SnRK1 in source-sink communication in cereal seedlings under abiotic stress	Plant Cell	26	808-827	2014	SKIN1,MYBS1,SKIN2,OSK1	OsSKIN1, OsO3L8, O3L8,OsMYBS1, Os-MYBS1, Mybs1,OsSKIN2, OsO3L9, O3L9,osk1, SnRK1A, OsSnRK1A, OsSNRK1a, SnRK1A/OSK1, SnRK1a, OsSnRK1.2, SnRK1.2, OsSnRK1alphaA, SnRK1alphaA
41118	0	Marathi B., Jena K.K.	Floral traits to enhance outcrossing for higher hybrid seed production in rice: present status and future prospects	Euphytica	201	1-14	2014	TDR,MADS7,AID1,CYP704B2,MADS4,MADS2,MFO1,CP1,LHS1,SPW1,RAG,DL,MADS24,RAP1A,UDT1,MADS58,WDA1,MADS13	tdr, OsbHLH005, bHLH005, OsbHLH5, bhlh5, TDR1, OsTDR, OsTDR1, OsMYC5, MYC5,OsMADS7, OsMADS45, FDRMADS1, RMADS216, AGL6, M79, MADS45, Os MADS7, Os MADS45, OsMADS7/45,aid1, OsAID1, DLN159, OsDLN159,OsCYP704B2,OsMADS4, PI1, DLN140, OsDLN140,OsMADS2, RMADS219, NMADS1, PI2, nmads1, DLN33, OsDLN33,OsMADS6, MADS6, OsMFO1,OsCP1, Os CP1,OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO, OsLHS1, OsLG3b, LG3b, qLGY3, LGY3, DLN80, OsDLN80, OLR, OsOLR, GW3p6, OsGW3p6, OsMADS1GW3p6, MADS1GW3p6, qLGY3/OsLG3b/GW3p6,SPW1, spw1, MADS16, OsMADS16,MADS3, OsMADS3, OsMADS3(t), RMADS222, RAG1, rf3,OsDL, dl(lop), lop, dl, dl1, OsDRPq3, DRPq3,OsMADS24, MADS8, OsMADS8, OsMADS8/24 ,OsMADS15, FDRMADS3, RMADS215, MADS15, DEP,Udt1, bHLH164, OsUDT1, OsbHLH164 ,OsMADS58,OsWDA1, Wda1, wda1, OS-CER1, OsGL1-5,OsMADS13, MAF1, RMADS206
41119	0	Zhou W., Malabanan P.B., Abrigo E.	OsHox4 regulates GA signaling by interacting with DELLA-like genes and GA oxidase genes in rice	Euphytica	201	97-107	2014	GA3OX1,D18,SCR1,SBI,GA2OX2,GRAS17,GA2OX8,GA2OX9,SLRL1,GA2OX6,GA2OX5,GA2OX3,WG3,SLR1,HOX4	OsGA3ox1, GA3ox1, OsGA3OX1,d18-h  (d18-I, d18h), dwf15, d25, d18, d18-k, d18-AD, d18-dy, OsGA3ox2, ga3ox2, OsGA3OX2, GA3OX2, OsGA3ox-2, GA3ox-2, GA3ox1,OsSCR1, OsSCR, OsGRAS-41, OsGRAS41, GRAS-41, GRAS41,GA2OX4, OsGA2ox4, ga2ox 4, OsGA2ox-4, OsSBI,OsGA2ox2, ga2ox 2, OsGA2ox-2,OsSCL14, SCL14, OsGRAS-17, OsGRAS17, GRAS-17, DLN96, OsDLN96, OsGRAS15, GRAS15 ,OsGA2ox8,OsGA2ox9, GA2ox7, 2-ODD35, Os2-ODD35, 2ODD35, Os2ODD35,OsSLRL1, OsGAI, OsSLRL, OsGRAS-1, OsGRAS1, GAI, SLRL, GRAS-1, GRAS1,OsGA2ox6,OsGA2ox5, 2-ODD32, Os2-ODD32, 2ODD32, Os2ODD32,OsGA2ox3, ga2ox 3, OsGA2ox-3, GA2ox3, GA2ox-3, GA2ox4,OsSCRL, SCRL, Os-SCL7, OsSCL7, SCL7, OsGRAS-19, OsGRAS19, GRAS-19, GRAS19, OsGRAS18, GRAS18 ,slr1-1, slr1, slr, GAI, OsGAI, OsSLR1, Os SLR1, OsRGA1, OsGRAS-18, OsGRAS-18, GRAS-18, GRAS18, SLR-1,Oshox4, OsHox4, OsHDZ31, OsHDZIP31, HDZ31, HDZIP31
41120	0	Kobayashi T.a b, Nakanishi Itai R.c, Nishizawa N.K.b	Iron deficiency responses in rice roots	Rice	7		2014	PEZ1,BHLH63,NAS2,NAS1,BHLH133,NAAT1,HRZ1,DMAS1,IRT1,NAC36,YSL15,PEZ2,IRO2,NRAMP1,HRZ2,TOM1,ABI3,YSL2,IRT2,FRDL1	OsPEZ1, OsMATE14, MATE14,OsIRO3, IRO3, OsbHLH063, bHLH063, bHLH63,OsNAS2, OsNAS1,OsNAS1,OsbHLH133, bHLH133, OsRSL8, RSL8,OsNAAT1,OsHRZ1,  OsRING149, RING149,OsDMAS1, OsAKR5, AKR5,OsIRT1, ZIP10, OsZIP10, OsZIP12, ZIP12,ONAC036, ONAC36, ONAC038, ONAC38, IDEF2, OsIDEF2,OsYSL15, OsYs7,OsPEZ2, OsMATE15, MATE15,OsIRO2, OsbHLH056, bHLH056, bHLH56, OsbHLH56,OsNramp1, OsNRAMP1, OsNramp6,OsRFPH2-24, OsHRZ2, OsRING150, RING150, CLG1, OsCLG1,OsTOM1, ZIFL4, OsZIFL4 ,OsLFL2, LFL2, OsIDEF1, IDEF1, OsABI3,OsYSL2, Os-YSL2, OsYs6 ,OsIRT2, OsIRT1, OsZIP15, ZIP15,OsFRDL1
41121	0	Hara Y.a, Yokoyama R.a, Osakabe K.b, Toki S.c, Nishitani K.a	Function of xyloglucan endotransglucosylase/hydrolases in rice	Ann. Bot.	114	1309-1318	2014	XTH11,XTH20,XTH19	OsXTH11, XTR2, OsXTR2, Meri-5,OsXTH20, XET32,OsXTH19
41122	0	Scalera V.a, Gena P.a, Mastrodonato M.b, Kitagawa Y.c, Carulli S.a, Svelto M.a, Calamita G.a d	Functional reconstitution of a rice aquaporin water channel, PIP1;1, by a micro-batchwise methodology	Plant Physiology and Biochemistry	85	78-84	2014	PIP1A	OsPIP1a, OsPIP1;1, PIP1a, RWC-1, PIP1-1, RWC1, OsPIP1-1, PIP1;1, PIP1-5
41123	0	Zeng D.E.a b, Hou P.a, Xiao F.c, Liu Y.a d	Overexpressing a novel RING-H2 finger protein gene, OsRHP1, enhances drought and salt tolerance in rice (Oryza sativa L.)	Journal of Plant Biology	57	357-365	2014	LEA3-1,ABA1,BZIP46,NCED1,_	OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3, OsLEA3A, LEA3A,OsABA1, Zep1, OsAba1, Aba2, OsAba2, OsZep1, Zep, OsZep, Aba1, OsABA2, Osaba1, OsZEP-1, OsZEP, OSZEP1, ZEP1, ZEP,ABL1, bZIP46, OsABL1, OsbZIP46, OsAREB8, OsABF2, ABF2, OsABF3, ABF3, OsbZIP46CA1, OsZIP46, ZIP46, OsbZIP46/OsABF2,OSNCED1, OsNCED-1, OsNCED3, OsNced3, NCED3, OsNCED9, NCED9,OsRHP1,  OsRING278, RING278
41124	0	Kumar M.a, Lee S.C.a, Kim J.Y.a, Kim S.J.a, Aye S.S.b, Kim S.R.a	Over-expression of dehydrin gene, OsDhn1, improves drought and salt stress tolerance through scavenging of reactive oxygen species in rice (Oryza sativa L.)	Journal of Plant Biology	57	383-393	2014	DHN1	LIP9, OsLIP9, lip9, DHN1, DIP1, OsDip1, OsLEA23, OsDhn1, COR410, OsLEA23/DIP1, DIP1/OsLEA23
41125	0	Wu J.a d, Lee D.Y.b, Wang Y.a d, Kim S.T.c, Baek S.B.e, Kim S.G.e, Kang K.Y.a b	Protein profiles secreted from phylloplane of rice leaves free from cytosolic proteins: Application to study rice-Magnaporthe Oryzae interactions	Physiol. Mol. Plant Pathol.	88	28-35	2014	_,CHT1,BG3,POXN,_,RMC,SUB64,SUB30,PRX117,_,_,_,PME7,_,_,GNS10,_,_,GH5BG,POX22.3,ALPHACA3,GNS1,_,_,GLP4-1,_	,Cht1*(Chi1), Ch16, Cht1, CHT-1, CH16, RC24, OsChia1a, OsChia1, Chi1, Cht1*, Chi-1, Cht-1, Cht1, RCC1, OsCht-1, PR3, OsPR3,PR2, OsPR2, OsBG3,poxN, prx38, prxRPN, RPN, poxN/PRX38, Osprx38, OsPOXN,,OsRMC, OsRLK, OsDUF26, DUF26, OsCBMIP, CBMIP, NCS, OsNCS, OsCRK5, CRK5,OsSUB64,OsSub30,prx117, OsPRX117, OsPRX47, PRX47,alphaGa1, alpha-Gal I,,OsARAF3,OsPME7,,,Gns10, OsGns10,,,OsGH5BG,POX22.3, OSPER, OsPOX, POX, Pir3, prx111, POX22, OsPOX1, POX1, OsPOX22.3, OsPR9, PR9,OsalphaCA3, alphaCA3,OsPR2, PR2, Gns1, OsGNS1, OsEGL1,prx131,PR1b,OsGLP4-1, OsCDP4.1, CDP4.1,LOX
41126	0	Giong H.K.a b, Moon S.a b, Jung K.H.a b	A systematic view of the rice calcineurin B-like protein interacting protein kinase family	Genes and Genomics	37	55-68	2014		
41127	0	Wang Y., Ma N., Qiu S., Zou H., Zang G., Kang Z., Wang G., Huang J.	Regulation of the alpha-expansin gene OsEXPA8 expression affects root system architecture in transgenic rice plants	Molecular Breeding	34	47-57	2014	EXPA8	OsEXPA8, OsEXP8, osaEXPa1.17
41128	0	Qiu S., Ma N., Che S., Wang Y., Peng X., Zhang G., Wang G., Huang J.	Repression of OsEXPA3 expression leads to root system growth suppression in rice	Crop Sci.	54	2201-2213	2014	EXPA3	OsEXP3 (Os-EXP3), EXPA3, OsEXP3, Os-EXP3, OsaEXPa1.18, RiExD, Os-EXPA3, OsEXPA3
41129	0	Xu G., Cui Y., Wang M., Li M., Yin X., Xia X.	OsMsr9, a novel putative rice F-box containing protein, confers enhanced salt tolerance in transgenic rice and Arabidopsis	Molecular Breeding	34	1055-1064	2014	FBOX396	OsFbox396, Os_F0578, OsMsr9, Msr9,  OsFBX257, FBX257
41130	0	Yan B., Tondi Yacouba N., Chen J., Wang Y., Gao G., Zhang Q., Liu X., He Y.	Analysis of minor quantitative trait loci for eating and cooking quality traits in rice using a recombinant inbred line population derived from two indica cultivars with similar amylose content	Molecular Breeding	34	2151-2163	2014		
41131	0	Chen M.a b, Chen J.a b c, Fang J.a b, Guo Z.a b, Lu S.a b	Down-regulation of S-adenosylmethionine decarboxylase genes results in reduced plant length, pollen viability, and abiotic stress tolerance	Plant Cell Tissue Organ Cult.	116	311-322	2014	_,SAMDC,SAMDC2	SAMDC1, SAMDC, OsSAMDC4,SamDC, AdoMetDC, AdoMetDC1, OsSAMDC1,SamDC2, AdoMetDC2, OsSAMDC2
41132	0	Liu H.a b, Ma Y.a b, Chen N.a b, Guo S.a b, Liu H.a, Guo X.a b, Chong K.a, Xu Y.a	Overexpression of stress-inducible OsBURP16, the beta subunit of polygalacturonase 1, decreases pectin content and cell adhesion and increases abiotic stress sensitivity in rice	Plant, Cell and Environment	37	1144-1158	2014		
41133	0	Ke Y.G.a b, Yang Z.J.a, Yu S.W.b, Li T.F.b, Wu J.H.b, Gao H.b, Fu Y.P.c, Luo L.J.a b	Characterization of OsDREB6 responsive to osmotic and cold stresses in rice	Journal of Plant Biology	57	150-161	2014	BZIP23,PP2C53,NHX1,ERF50,PP2C6,SOS1,P5CS,DREB1B,OSBZ8,2R_MYB36 	OsbZIP23, OsAREB1, OsABF2, Osbzip23, OsAREB2, OsZIP23, ZIP23,OsPP2C53, OsPP81, OsABIL2, ABIL2,OsNHX1, OcNHX1, OgNHX1, OrNHX1, OpNHX1, ObNHX1,OsERF#050, OsERF050, OsERF50, AP2/EREBP#113, AP2/EREBP113, OsDREB6, OsERF60, ERF60,OsPP2C06/OsABI2, OsPP2C06, OsPP2C6, OsABI2, OsPP10, ABI2, OsABIL1, ABIL1,OsSOS1, OsNHA1, NHA1, SOS1/NHX7, NHX7, OsNHX7,OsP5CS, P5CS1, OsP5CS1, OsALDH18B1, ALDH18B1, OsP5CS-1, P5CS-1,OsDREB1B, ERF31, OsERF031, OsERF#031, OsERF31, AP2/EREBP#169, AP2/EREBP169, OsDREB1b, OsDREB1C, OsCBF1, CBF1,OsBZ8, OsbZIP05, OsGBF1, GBF1, OsGBF1a, OsGBF1b,OsMYB2, MYB2, Os2R_MYB36 
41134	0	Yu J.a, Li Y.a, Tang W.a b, Liu J.b, Lu B.R.c, Liu Y.a b	The Accumulation of Glycine Betaine Is Dependent on choline monooxygenase (OsCMO), Not on Phosphoethanolamine N-methyltransferase (OsPEAMT1), in Rice (Oryza sativa L. ssp. japonica)	Plant Molecular Biology Reporter	32	916-922	2014	_,_,_	OsPEAMT1,OsCMO,OsPEAMT2
41135	0	Zhou J.a b, Liu Q.a c, Zhang F.d, Wang Y.a b, Zhang S.a b, Cheng H.a, Yan L.a, Li L.a, Chen F.d, Xie X.a b c	Overexpression of OsPIL15, a Phytochrome-interacting factor-like protein gene, represses etiolated seedling growth in rice	J Integr Plant Biol	56	373-387	2014	PIL15	OsPIL15, OsbHLH105, PIF3, OsPIF3
41136	0	Yang B.a, Wang X.M.a, Ma H.Y.a, Jia Y.a, Li X.b, Dai C.C.a	Effects of the fungal endophyte Phomopsis liquidambari on nitrogen uptake and metabolism in rice	Plant Growth Regul.	73	165-179	2014	HTNE,GS2,GLT1,AMT3;3,AMT1;2,AMT1;1,AMT3;2,AMT3;1,_,GLN1;1	NRT2.3, OsNRT2.3, OsNRT2;1, OsNRT2.3a, OsNRT2.3b, OsNRT2;3a, OsNRT2.5 ,OsGS2, GLN2, OsGLN2, RGS31, OsRGS31,OsGLT1, OsNADH-GOGAT1, NADH-GOGAT1, OsNADH-GOGAT, GOGAT, NADH-GOGAT, OsGOGAT1, GOGAT1, OsGLU1,OsAMT3;3, AMT3;3, OsAMT3.3,OsAMT1;2, AMT1-2, Osamt1-3, "OsAMT1,3", OsAMT1;3, OsAMT1.3, OsAMT1.2, AMT1.2,OsAMT1;1, OsAMT1:1, OsAMT1, AMT1-1, AMT1, OsAMT1p, OsAMT1-1, Osamt1-1, "OsAMT1,1", OsAMT1.1, AMT1.1, FCO12,AMT3;2, OsAMT3;2, OsAMT3.2,OsAMT3;1, AMT3-1, OsAMT3.1, OsAMT2;2,OsNR1, NR1, nia1, OsNIA1, NIA1, OsNIA2, NIA2,OsGLN1;1, GS1, RGS28, OsGS1;1, GS1;1, OsGS, GS1, OsGS1, GLN1-1, OsGS1-1, GS1-1, GS1.1, OsGS1.1
41137	0	You J., Zong W., Hu H., Li X., Xiao J., Xiong L.	A STRESS-RESPONSIVE NAC1-regulated protein phosphatase gene rice Protein Phosphatase18 modulates drought and oxidative stress tolerance through abscisic acid-independent reactive oxygen species scavenging in rice	Plant Physiol.	166	2100-2114	2014	ONAC2,PP2C10	SNAC1, snac1, OsNAC9, ONAC002, ONAC2, ONAC033, ONAC33, ONAC043, ONAC43, ONAC044, ONAC44, OsNAC19, NAC19, SNAC1/ONAC002, OsSNAC1, OsNAC9, OsNAC1,OsPP2C10, OsPP18
41138	0	Xu H.W.a, Mo Y.W.b, Wang W.c, Wang H.b, Wang Z.d	OsPIN1a gene participates in Regulating negative phototropism of rice riceoots	Rice Science	21	83-89	2014	PIN1B	PIN1A, OsPIN1A, OsPIN1a, REH1, OsPIN1, OsPIN1b, REH1/OsPIN1
41139	0	Zhao S.P.a b, Ye X.Z.a, Shi W.M.c	Expression of OsAMT1 (1.1-1.3) in rice varieties differing in nitrogen accumulation	Russian Journal of Plant Physiology	61	707-713	2014	AMT1;3,AMT1;2,AMT1;1	OsAMT1;3, AMT1-3, Osamt1-2, "OsAMT1,2", OsAMT1;2, OsAMT1.3, AMT1.2,OsAMT1;2, AMT1-2, Osamt1-3, "OsAMT1,3", OsAMT1;3, OsAMT1.3, OsAMT1.2, AMT1.2,OsAMT1;1, OsAMT1:1, OsAMT1, AMT1-1, AMT1, OsAMT1p, OsAMT1-1, Osamt1-1, "OsAMT1,1", OsAMT1.1, AMT1.1, FCO12
41140	0	Li W.X.a, Huang J.Z.a, Zhao H.J.a, Tan Y.Y.a, Cui H.R.a, Poirier Y.b, Shu Q.Y.a	Production of low phytic acid rice by hairpin RNA- and artificial microRNA-mediated silencing of OsMIK in seeds	Plant Cell Tissue Organ Cult.	119	15-25	2014	_	OsMIK, LPA
41141	0	Sun L.J.a, Huang L.b, Li D.Y.b, Zhang H.J.b, Song F.M.b	Comprehensive expression analysis suggests overlapping of rice OsWRKY transcription factor genes during abiotic stress responses	Zhiwu Shengli Xuebao/Plant Physiology Journal	50	1651-1658	2014	WRKY72,WRKY62,WRKY35,WRKY77,WRKY79,WRKY21,WRKY95,WRKY16,WRKY67,WRKY7,WRKY73,WRKY71,WRKY6,WRKY15,WRKY22,WRKY27,WRKY108,WRKY109,WRKY40,WRKY115,WRKY54,WRKY82,WRKY43,WRKY20,SGSD3,WRKY45,WRKY8,WRKY75,WRKY23,WRKY70,WRKY89,WRKY53,WRKY10,WRKY111,WRKY116,WRKY19,WRKY4,WRKY113,WRKY30,WRKY11,WRKY61,WRKY28,WRKY24,WRKY66,WRKY74,WRKY1,WRKY65,WRKY52,WRKY2,WRKY47,WRKY42,WRKY3,WRKY64,WRKY26	OsWRKY72, WRKY-72,OsWRKY62, OsWRKY62.1, OsWRKY62.2, XB10, OsWRKY62-1, OsWRKY62-2,OsWRKY35,OsWRKY77, WRKY-77,OsWRKY79, WRKY-79,OsWRKY21,OsWRKY95,OsWRKY16,OsWRKY67,OsWRKY7,OsWRKY73,OsWRKY71, WRKY-71,OsWRKY6, WRKY-6, DLN103, OsDLN103,OsWRKY15,OsWRKY22,OsWRKY27,OsWRKY108,OsWRKY109,OsWRKY40,OsWRKY115,OsWRKY54,OsWRKY82,OsWRKY43,OsWRKY20,OsWRKY36, WRKY36, OsSGSD3,OsWRKY45, OsWRKY45-1, OsWRKY45-2, WRKY45-1, WRKY45-2,OsWRKY8,OsWRKY75,OsWRKY23,OsWRKY70,OsWRKY89,OsWRKY53, WRKY-53,OsWRKY10,OsWRKY111,OsWRKY116,OsWRKY19,OsWRKY4, WRKY122, OsWRKY122,OsWRKY113,OsWRKY30,OsWRKY11, Dlf1, OsWRKY11.1, OsWRKY11.2,OsWRKY61, OsWRKY103, WRKY103,OsWRKY28, DLN170, OsDLN170,OsWRKY24,OsWRKY66,OsWRKY74,OsWRKY1, OsWRKY1v2,OsWRKY65,OsWRKY52,OsWRKY2,OsWRKY47,OsWRKY42, WRKY-42,OsWRKY3 ,OsWRKY64,OsWRKY26, OsWRKY59, DLN19, OsDLN19
41142	0	Zhang X.a, Tang W.a, Liu J.b, Liu Y.a b	Co-expression of rice OsP5CS1 and OsP5CS2 genes in transgenic tobacco resulted in elevated proline biosynthesis and enhanced abiotic stress tolerance	Chinese Journal of Applied and Environmental Biology	20	717-722	2014	P5CS,ALDH18B2	OsP5CS, P5CS1, OsP5CS1, OsALDH18B1, ALDH18B1, OsP5CS-1, P5CS-1,P5CS2, OsP5CS2, OsALDH18B2 
41143	0	Teng K., Li J., Liu L., Han Y., Du Y., Zhang J., Sun H., Zhao Q.	Exogenous ABA induces drought tolerance in upland rice: The role of chloroplast and ABA biosynthesis-related gene expression on photosystem II during PEG stress	Acta Physiologiae Plantarum	36	2219-2227	2014	NCED2,PSBA,ABA1,NCED3,NCED2,PSBD,NCED1	OsNCED2, OsNced2, OsCCD4b, CCD4b, OsCCD4c, CCD4c,PsbA, psbA, OsPsbA, PSBD1, OsPSBD1, psbD1,OsABA1, Zep1, OsAba1, Aba2, OsAba2, OsZep1, Zep, OsZep, Aba1, OsABA2, Osaba1, OsZEP-1, OsZEP, OSZEP1, ZEP1, ZEP,OSNCED3, OsNCED-3, OsNCED3, OsNCED3a, NCED3a, OsNCED4, NCED4, OsNECD2, OsNCED2b, NCED2b ,OSNCED2, OsNCED2, OsNCED5, NCED5,psbD, D2, OsPsbD1, OsPsbD2,OSNCED1, OsNCED-1, OsNCED3, OsNced3, NCED3, OsNCED9, NCED9
41144	0	Ni J.a b, Zhu Z.b c, Wang G.c, Shen Y.a, Zhang Y.a, Wu P.b	Intragenic suppressor of Osiaa23 revealed a conserved Tryptophan residue crucial for protein-protein interactions	PLoS ONE	9		2014	ARF6A,IAA23,ARF6B,ARF8,ARF17,ARF16	OsARF6a, OsARF6, ARF6,OsIAA23,OsARF6b, OsARF25, ARF25,OsARF8, OsARF12, ARF12,OsARF17,OsARF16
41145	0	Wu J.a, Zhu C.a, Pang J.a, Zhang X.a, Yang C.a, Xia G.a, Tian Y.a, He C.a b	OsLOL1, a C2C2-type zinc finger protein, interacts with OsbZIP58 to promote seed germination through the modulation of gibberellin biosynthesis in Oryza sativa	Plant Journal	80	1118-1130	2014		
41146	0	Zhao F.Y.a, Han M.M.a, Zhang S.Y.b, Ren J.a, Hu F.a, Wang X.a	MAPKs as a cross point in H2O2 and auxin signaling under combined cadmium and zinc stress in rice roots	Russian Journal of Plant Physiology	61	608-618	2014	ZIP8,ARF7B,BIF2,MSRMK2,IAA12,ARF13,PIN1C,ZIP6,IAA9,ARF7,HMA4,ARF6B,PIN5A,YUCCA2,ETT1,HMA5,ZIP7,MAPK4,PIN10B,YUCCA1,YUCCA3,IAA15,ARF22,ARF16,PIN5B,BWMK1,MPK7,HMA2,IAA30,ARF20	OsZIP8, OsZIP1, ZIP1, OsZIP13, ZIP13,OsARF7b, OsARF21, DLN216, OsDLN216,bif2, Osbif2, OsBIF2, OsPID, PID, OsAGC25, AGC25,OsMSRMK2, OsMAPK5, OsMAP1, OsMPK3, OsBIMK1, OsMAPK2, MPK5, BIMK1, MAPK2, MAPK5, MPK3, OsMPK5, OsMAPK3, OsMAPK5b, MAPK3,OsIAA12,OsARF13, OsARF12, ARF12,PIN1B, OsPIN1B, OsPIN1b, OsPIN1c,OsZIP6,OsIAA9, OsIAA2,OsARF7,OsHMA7, osHMA4, HMA7, OsHMP12, HMP12,OsARF6b, OsARF25, ARF25,OsPIN5a, OsPIN6,OsYUCCA2, OsYUC2, YUC2,OsARF15, ARF15, OsETT1, ARF3b, OsARF3b, OsARF3-1, ARF3-1, OsARF3, ARF3, DLN154, OsDLN154,OsHMA8, osHMA5, HMA8, OsHMP27, HMP27,OsZIP7,OsMAPK4, OsMAP2, OsMSRMK3, OsMPK4, OsMPK7, MAP2, MSRMK3, MPK4, MPK7, MAPK7, OsMAPK7,PIN3B, OsPIN3b, OsPIN10b,OsYUCCA1, OsYUC1, YUC1,OsYUCCA3, OsYUC3, YUC3,OsIAA15,OsARF22,OsARF16,PIN5C, OsPIN5c, OsPIN5b, PIN4,OsBWMK1, MPK12, MAPK1, OsMAPK1, OsMPK12, OsMPK17-1, MPK17-1, OsBWMK1L, OsBWMK1M, OsBWMK1S, OsMAPK17-1, MAPK17-1, MAPK12, OsMAPK12,OsMPK7, OsMAPK44, MAPK44, OsMAPK20-5, MAPK20-5,OsHMA2, osHMA2, OsHMA2v ,OsIAA30,OsARF20
41147	0	Hu T.a b, Yang J.b, Yang Y.a, Wu Y.b	Molecular characterization, heterologous expression and resistance analysis of OsLEA3-1 from Oryza sativa	Biologia (Poland)	69	625-634	2014	LEA3-1	OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3, OsLEA3A, LEA3A
41148	0	Xin Z., Wang Q., Yu Z., Hu L., Li J., Xiang C., Wang B., Lou Y.	Overexpression of a Xylanase Inhibitor Gene, OsHI-XIP, Enhances Resistance in Rice to Herbivores	Plant Molecular Biology Reporter	32	465-475	2014	_	DIP3, XIP, OsHI-XIP, OsXIP2, XIP2
41149	0	Sun L.a b c d, Zhang Q.e, Wu J.e, Zhang L.a b d, Jiao X.a b d, Zhang S.a b d, Zhang Z.e, Sun D.a b d, Lu T.e, Sun Y.a b d	Two rice authentic histidine phosphotransfer proteins, OsAHP1 and OsAHP2, mediate cytokinin signaling and stress responses in rice	Plant Physiol.	165	335-345	2014		
41150	0	Xu Q.a, Xu N.a, Xu H.a, Tang L.a, Liu J.a, Sun J.b, Wang J.a	Breeding value estimation of the application of IPA1 and DEP1 to improvement of Oryza sativa L. ssp. japonica in early hybrid generations	Molecular Breeding	34	1933-1942	2014		
41151	0	Imam J.a b, Mahto D.a, Mandal N.P.a, Maiti D.a, Shukla P.b, Variar M.a	Molecular Analysis of Indian Rice Germplasm Accessions with Resistance to Blast Pathogen	Journal of Crop Improvement	28	729-739	2014		
41152	0	Sudhalakshmi C., Krishnasamy R., Rajarajan A., Meena S.	Genotypic Divergence in Expression of Zinc-Deficiency Symptoms of Rice (Oryza sativa L.) in Sand Culture	Archives of Phytopathology and Plant Protection	48	2932-2948	2014		
41153	0	Maavimani M.a, Saraswathi R.b	Anther characteristics and spikelet fertility in rice (oryza sativa l.) under high temperature stress at anthesis	Indian Journal of Genetics and Plant Breeding	74	300-308	2014		
41154	0	Rajkhowa D.J.a, Mahanta K.b, Kumar M.a, Sarma A.K.a	Nitrogen mineralization from rice straw as influenced by organic and inorganic amendments in acid soil	Agrochimica	58	103-113	2014		
41155	0	Lata C.a b, Mishra A.K.c, Muthamilarasan M.c, Bonthala V.S.c, Khan Y.c, Prasad M.c	Genome-wide investigation and expression profiling of AP2/ERF transcription factor superfamily in foxtail millet (Setaria italica L.)	PLoS ONE	9		2014		
41156	0	Roy B., Bhadra S.	Hydroponic screening for selection of aluminium tolerant rice (Oryza sativa L.) genotypes at seedlings stage using different indices	Cereal Res. Commun.	42	463-473	2014		
41157	0	Das S.S., Sanan-Mishra N.	A direct method for genetically transforming rice seeds modelled with FHVB2, a suppressor of RNAi	Plant Cell Tissue Organ Cult.	120	277-289	2014		
41158	0	Bhattacharya S.a, Chattopadhyaya B.a c, Koduru L.a d, Das N.a, Maiti M.K.a b	Heterologous expression of Brassica juncea microsomal omega-3 desaturase gene (BjFad3) improves the nutritionally desirable omega-6:omega-3 fatty acid ratio in rice bran oil	Plant Cell Tissue Organ Cult.	119	117-129	2014		
41159	0	Chakravarti S.Kr.a, Singh S.b, Kumar H.a	Studies on genetic parameters in induced micro-mutation population of aromatic rice (Oryza Sativa L.) in M2 and M3 generations	International Journal of Agricultural and Statistical Sciences	10	471-479	2014		
41160	0	Priyadarshini S.K.a, Raveendran M.b, Manonmani S.a, Robin S.a	Effect of QTLs controlling grain yield under drought stress in the genetic background of ADT45 rice variety	Indian Journal of Genetics and Plant Breeding	74	374-377	2014		
41161	0	Kumari M.a, Asthir B.a, Bains N.S.b	Temporal Dynamics of Antioxidant Defence System in Relation to Polyamine Catabolism in Rice under Direct-Seeded and Transplanted Conditions	Rice Science	21	343-353	2014		
41162	0	Shivani S.K.a, Kumar S.a, Elanchezhian R.b, Singh S.S.a, Bhatt B.P.a	Performance of rice (Oryza Sativa L.) Genotypes to submergence stress in rainfed lowland of eastern region	International Journal of Agricultural and Statistical Sciences	10	465-470	2014		
41163	0	Kumar S.a, Dwivedi S.K.a, Singh S.S.a, Jha S.K.b, S L.b, Elanchezhian R.c, Singh O.N.d, Bhatt B.P.a	Identification of drought tolerant rice genotypes by analysing drought tolerance indices and morpho-physiological traits	Sabrao Journal of Breeding and Genetics	46	217-230	2014		
41164	0	Kumar A.a b, Dwivedi S.a, Singh R.P.b, Chakrabarty D.a, Mallick S.a, Trivedi P.K.a, Adhikari B.c, Tripathi R.D.a	Evaluation of amino acid profile in contrasting arsenic accumulating rice genotypes under arsenic stress	Biol. Plant.	58	733-742	2014		
41165	0	Eram S.a, Singh A.K.a, Singh A.a, Singh N.K.b, Singh P.K.a	Physicochemical characterization and organoleptic analysis in rice cultivars	Indian Journal of Agricultural Research	48	437-445	2014		
41166	0	Parvathy R.a, Mohanlal S.a, Pushpan C.b, Helen A.b, Jayalekshmy A.a	Antioxidant properties, anti-inflammatory effects, and bioactive constituents of the Indian medicinal rice Njavara yellow compared with staple varieties	Food Sci. Biotechnol.	23	1379-1388	2014		
41167	0	Gautam P.a, Lal B.a, Raja R.a, Baig M.J.b, Haldar D.a, Rath L.a, Shahid M.a, Tripathi R.a, Mohanty S.a, Bhattacharyya P.a, Nayak A.K.a	Post-flood nitrogen and basal phosphorus management affects survival, metabolic changes and anti-oxidant enzyme activities of submerged rice (Oryza sativa)	Functional Plant Biology	41	1284-1294	2014		
41168	0	Roy P.S., Dash A.K., Subudhi H.N., Rao R.N., Rao G.J.N.	Molecular and morphological characterization of Indian rice hybrids	Aust J Crop Sci	8	1607-1614	2014		
41169	0	Krishnamurthy S.L.a, Sharma S.K.a, Kumar V.a, Tiwari S.b, Batra V.a, Singh N.K.b	Assessment of genetic diversity in rice genotypes for salinity tolerance using Saltol markers of Chromosome 1	Indian Journal of Genetics and Plant Breeding	74	243-247	2014		
41170	0	Kiranmayi S.L.a, Manorama K.a, Tripura Venkata V.G.N.b, Radhika K.a, Cheralu C.c, Roja V.a, Sarla N.b	Identification of markers associated with iron and zinc concentration in recombinant inbred lines of brown rice	Indian Journal of Genetics and Plant Breeding	74	423-429	2014		
41171	0	Dubey A.K.a, Pandian R.T.P.a, Rajashekara H.a, Singh V.K.a, Kumar G.a, Sharma P.a, Kumar A.a, Gopala Krishnan S.b, Singh A.K.b, Rathour R.c, Singh U.D.a	Phenotyping of improved rice lines and landraces for blast and sheath blight resistance	Indian Journal of Genetics and Plant Breeding	74	499-501	2014		
41172	0	Sharma N.a, Kaur R.b, Mangat G.S.a, Singh K.c	Red pericarp introgression lines derived from interspecific crosses of rice: Physicochemical characteristics, antioxidative properties and phenolic content	J. Sci. Food Agric.	94	2912-2920	2014		
41173	0	Verma S.K.a, Xalxo M.S.a, Saxena R.R.a, Verulkar S.B.b	Identification of QTLs for cold tolerance at seedling stage in rice (Oryza sativa L.)	Indian Journal of Genetics and Plant Breeding	74	86-89	2014		
41174	0	Naresh Babu N.a, Vinod K.K.b, Gopala Krishnan S.a, Bhowmick P.K.a, Vanaja T.c, Krishnamurthy S.L.c, Nagarajan M.b, Singh N.K.d, Prabhu K.V.a, Singh A.K.a	Marker based haplotype diversity of Salto/QTL in relation to seedling stage salinity tolerance in selected genotypes of rice	Indian Journal of Genetics and Plant Breeding	74	16-25	2014		
41175	0	Majhi B.B., Bhosale R., Jawkar S., Veluthambi K.	Evaluation of codA, tms2, and ABRIN-A as negative selectable markers in transgenic tobacco and rice	In Vitro Cellular and Developmental Biology - Plant	50	541-551	2014		
41176	0	Bose L.K.a, Jambhulkar N.N.b, Singh O.N.c	Additive main effects and multiplicative interaction (AMMI) analysis of grain yield stability in early duration rice	Journal of Animal and Plant Sciences	24	1885-1897	2014		
41177	0	Li J.a, Sun Y.b, Liu H.c d, Wang Y.b, Jia Yulin Y.e, Xu M.b	Natural variation of rice blast resistance gene Pi-d2	Genetics and Molecular Research	13	10582-10592	2014		
41178	0	Kim S.I.a c, Tai T.H.a b	Identification of novel rice low phytic acid mutations via TILLING by sequencing	Molecular Breeding	34	1717-1729	2014		
41179	0	Sung J.a, Kim B.K.b, Kim B.S.b, Kim Y.b	Mass spectrometry-based electric nose system for assessing rice quality during storage at different temperatures	J Stored Prod Res	59	204-208	2014		
41180	0	Phung T.H., Jung S.	Perturbed porphyrin biosynthesis contributes to differential herbicidal symptoms in photodynamically stressed rice (Oryza sativa) treated with 5-aminolevulinic acid and oxyfluorfen	Pestic Biochem Physiol	116	103-110	2014		
41181	0	Qin Y., Kweon S.J., Park S.Y., Lee J.H., Woo H.J., Shin K.S., Cho H.S., Park S.K., Lim M.H.	Little impacts on transcriptome and secondary metabolites of transgenic rice by resveratrol synthase gene	Plant OMICS	7	490-498	2014		
41182	0	Kim Y.S.a, Kim I.S.a, Choe Y.H.a, Bae M.J.a, Shin S.Y.a, Park S.K.b, Kang H.G.c, Kim Y.H.d, Yoon H.S.a	Overexpression of the Arabidopsis vacuolar H+-pyrophosphatase AVP1 gene in rice plants improves grain yield under paddy field conditions	Journal of Agricultural Science	152	941-953	2014		
41183	0	Joo J., Lee Y.H., Song S.I.	Rice CatA, CatB, and CatC are involved in environmental stress response, root growth, and photorespiration, respectively	Journal of Plant Biology	57	375-382	2014		
41184	0	Woo H.J.a, Sohn S.I.a, Shin K.S.a, Kim J.K.b, Kim B.G.a, Lim M.H.a	Expression of tobacco tocopherol cyclase in rice regulates antioxidative defense and drought tolerance	Plant Cell Tissue Organ Cult.	119	257-267	2014		
41185	0	Park S.Y.a, Kim J.K.b, Lee S.Y.a, Oh S.D.a, Lee S.M.a, Jang J.S.c, Yang C.I.d, Won Y.J.d, Yeo Y.a	Comparative analysis of phenolic acid profiles of rice grown under different regions using multivariate analysis	Plant OMICS	7	430-437	2014		
41186	0	Mendes C.A.a, Borba T.C.O.b, Bueno L.G.c, Cruzeiro G.A.V.d, Mendonca J.A.b, Pantaliao G.F.b, Vianello R.P.b, Brondani C.b	Association analysis for yield and its component traits in lines and cultivars of upland rice [Analise de associacao quanto a produtividade e seus caracteres componentes em linhagens e cultivares de arroz de terras altas]	Pesqui. Agropecu. Bras.	49	771-782	2014		
41187	0	Zanke C.D.a, Ling J.a, Plieske J.b, Kollers S.c, Ebmeyer E.c, Korzun V.c, Argillier O.d, Stiewe G.e, Hinze M.e, Neumann K.a, Ganal M.W.b, Roder M.S.a	Whole genome association mapping of plant height in winter wheat (Triticum aestivum L)	PLoS ONE	9		2014		
41188	0	Beutler A.N., Silva V.N., Deak E.A., Burg G.M., Schmidt M.R., Toebe M.	Zinc doses, sources and application times: Seed physiological potential and flooded rice yield	Aust J Crop Sci	8	1517-1525	2014		
41189	0	Perera U.I.P.a, Ratnasekera D.b, Senanayake S.G.J.N.b, Abeysiriwardena A.c	Genetic parameters and correlations of yield attributing characteristics of weedy rice in Sri Lanka	Journal of the National Science Foundation of Sri Lanka	42	299-306	2014		
41190	0	Ngu M.S.a, Thomson M.J.b, Bhuiyan M.A.R.a, Ho C.c, Wickneswari R.a	Fine mapping of a grain weight quantitative trait locus, qGW6, Using near isogenic lines derived from oryza rufipogon IRGC105491 and oryza sativa cultivar MR219	Genetics and Molecular Research	13	9477-9488	2014		
41191	0	Bargsten J.W.a c e, Severing E.I.b, Nap J.P.a c, Sanchez-Perez G.F.a d, van Dijk A.D.J.a f	Biological process annotation of proteins across the plant kingdom	Current Plant Biology	1	73-82	2014		
41192	0	Biswas S., Razzaque S., Elias S.M., Amin U.S.M., Haque T., Islam S.M.T., Lisa L.A., Naznin F., Rasul N.M., Seraj Z.I.	Effect of the vacuolar Na+/H+ antiporter transgene in a rice landrace and a commercial rice cultivar after its insertion by crossing	Acta Physiologiae Plantarum	37		2014		
41193	0	Contreras R., Figueiras A.M., Gallego F.J., Benito C.	Brachypodium distachyon: A model species for aluminium tolerance in Poaceae	Functional Plant Biology	41	1270-1283	2014		
41194	0	Bakhshi B.a, Salekdeh G.H.b, Bihamta M.R.c, Tohidfar M.d	Characterization of three key MicroRNAs in rice root architecture under drought stress using in silico analysis and quantitative real-time PCR	Biosciences Biotechnology Research Asia	11	555-565	2014		
41195	0	Hossain M.K.a, Tze O.S.b, Nadarajah K.b, Jena K.c, Bhuiyan M.A.R.a, Ratnam W.a	Identification and validation of sheath blight resistance in rice (Oryza sativa L.) cultivars against Rhizoctonia solani	Canadian Journal of Plant Pathology	36	482-490	2014		
41196	0	Machado A.C.Z.a, De Araujo Filho J.V.b	Host status and phenotypic diversity of rice cultivars resistant to Meloidogyne species under glasshouse conditions	Nematology	16	991-999	2014		
41197	0	Fujii S., Kazama T., Ito Y., Kojima S., Toriyama K.	A candidate factor that interacts with RF2, a restorer of fertility of Lead rice-type cytoplasmic male sterility in rice	Rice	7		2014		
41198	0	El-Hendawy S.a b, Al-Suhaibani N.a, Schmidhalter U.c, Sakagami J.I.d	Adaptive traits associated with tolerance to flash flooding during emergence and early seedling growth stages in rice	Plant OMICS	7	474-489	2014		
41199	0	Bhattacharya A., Mikkilineni V., Verma L., Palan B., Mali K., Char B.	Evaluation of doubled haploid culture conditions and regeneration of an indica rice hybrid	Indian Journal of Genetics and Plant Breeding	74	384-386	2014		
41200	0	Singh S.K., Katiyar T.P.S., Singh P., Singh A.K.	Evaluation of crop establishment methods and split application of nitrogen on yield attributes and yield of hybrid rice	Annals of Agri Bio Research	19	416-419	2014		
41201	0	Ingole K.D., Prashanthi S.K., Krishnaraj P.U.	Mining for major blast resistance genes in rice landraces of Karnataka	Indian Journal of Genetics and Plant Breeding	74	378-383	2014		
41202	0	Krishnamurthy S.L.a, Sharma S.K.a, Gautam R.K.b, Kumar V.a	Path and association analysis and stress indices for salinity tolerance traits in promising rice (Oryza sativa L.) genotypes	Cereal Res. Commun.	42	474-483	2014		
41203	0	Prakash M., Sathiya Narayanan G., Sunil Kumar B., Padmavathi S.	Effect of fly ash seed pelleting on growth, photosynthesis and yield in rice under aerobic condition	Indian Journal of Agricultural Research	48	465-471	2014		
41204	0	Shikari A.B.a, Rajashekara H.b, Khanna A.a, Gopala Krishnan S.a, Rathour R.c, Singh U.D.b, Sharma T.R.d, Prabhu K.V.a, Singh A.K.a	Identification and validation of rice blast resistance genes in Indian rice germplasm	Indian Journal of Genetics and Plant Breeding	74	286-299	2014		
41205	0	Gopikannan M., Ganesh S.K.	Genetic dissection of yield and yield components related to sodicity tolerance in rice (Oryza sativa L.)	Aust J Crop Sci	8	1571-1578	2014		
41206	0	Singh S.a, Jha V.B.a c, Singh R.N.a b, Akhauri R.K.a, Singh B.a c	Effect of different levels of sulphur on yield and yield attributes of mustard under different cropping systems	Ann Biol	30	464-465	2014		
41207	0	Pachauri V.a, Mishra V.a, Mishra P.a, Singh A.K.b, Singh S.b, Singh R.c, Singh N.K.a	Identification of candidate genes for rice grain aroma by combining QTL mapping and transcriptome profiling approaches	Cereal Res. Commun.	42	376-388	2014		
41208	0	Kumar J.a, Jain S.b, Jain R.K.a	Linkage mapping for grain iron and zinc content in F2population derived from the cross between PAU201 and Palman 579 in rice (Oryza sativa L.)	Cereal Res. Commun.	42	389-400	2014		
41209	0	Amin L.a, Azad M.A.K.a b, Ahmad Azlan N.A.a, Zulkifli F.a	Factors influencing stakeholders' attitudes toward cross-kingdom gene transfer in rice	New Genet Soc	33	370-399	2014		
41210	0	Usenbekov B.N.a, Kaykeev D.T.a, Yhanbirbaev E.A.a, Berkimbaj H.a, Tynybekov B.M.b, Satybaldiyeva G.K.b, Baimurzayev N.B.b, Issabayeva G.S.c	Doubled haploid production through culture of anthers in rice	Indian Journal of Genetics and Plant Breeding	74	90-92	2014		
41211	0	Beutler A.N.a, Giacomeli R.b, Alberto C.M.a, Silva V.N.a, da Silva Neto G.F.a, Machado G.A.a, Santos A.T.L.a	Soil hydric excess and soybean yield and development in Brazil	Aust J Crop Sci	8	1461-1466	2014		
41212	0	Nashta M.R., Shahpiri A.	Site-directed mutagenesis reveals that N-terminal cysteines are involved in dimerization of OsTrx20 and OsTrx23	Plant Systematics and Evolution	300	2199-2204	2014		
41213	0	Sun H.a b, Mao J.c, Lan B.d, Zhang C.c, Zhao C.c, Pan G.c, Pan X.b	Characterization and mapping of a spotted-leaf genotype, spl Y181 that confers blast susceptibility in rice	European Journal of Plant Pathology	140	407-417	2014		
41214	0	Zuo S., Zhang Y., Yin Y., Li G., Zhang G., Wang H., Chen Z., Pan X.	Fine-mapping of qSB-9 TQ, a gene conferring major quantitative resistance to rice sheath blight	Molecular Breeding	34	2191-2203	2014		
41215	0	Yang F.a, Chen Y.b, Tong C.b, Huang Y.b, Xu F.b, Li K.a, Corke H.a, Sun M.a, Bao J.b	Association mapping of starch physicochemical properties with starch synthesis-related gene markers in nonwaxy rice (Oryza sativa L.)	Molecular Breeding	34	1747-1763	2014		
41217	0	Chen G.a b, Luo S.a b, He H.a b, Zhang Z.a b, Li H.a b	Effect of perchlorate stress on the growth and development of rice and its nutrient uptake	Shengtai Xuebao/ Acta Ecologica Sinica	34	5460-5469	2014		
41218	0	Li W.a, Guo J.F.a, Yuan H.X.b, Li Y.R.c, Huang Y.X.a, Liu Y.L.a, Jiang S.H.a	Assessment on the ecological fitness of anti-fungal transgenic rice	Shengtai Xuebao/ Acta Ecologica Sinica	34	2581-2588	2014		
41219	24388908	Zhang W.a b c, Lin K.a b c, Zhou J.a b c, Zhang W.a b c, Liu L.a b c, Zhang Q.a b c	Cadmium accumulation, sub-cellular distribution and chemical forms in rice seedling in the presence of sulfur	Environ. Toxicol. Pharmacol.	37	348-353	2014		
41220	0	Liu H.M.a, Zhou X.Y.b, Li X.Z.a, Chen J.a, Wang W.F.a, Liu J.F.a, Xu Q.G.a	Heterosis analysis of chlorophyll fluorescence parameters in indica hybrid rice	Zhiwu Shengli Xuebao/Plant Physiology Journal	50	855-860	2014		
41221	0	Zhang Y.H., Tang L., Liu X.J., Liu L.L., Cao W.X., Zhu Y.	Modeling dynamics of leaf color based on RGB value in rice	Journal of Integrative Agriculture	13	749-759	2014		
41222	0	Meng F.a b, Liu D.a, Yang X.a, Shohag M.J.I.a, Yang J.c, Li T.a, Lu L.a, Feng Y.a	Zinc uptake kinetics in the low and high-affinity systems of two contrasting rice genotypes	Journal of Plant Nutrition and Soil Science	177	412-420	2014		
41223	24741364	He H.a, Yang R.a, Jia B.a, Chen L.b, Fan H.a, Cui J.a, Yang D.a, Li M.a, Ma F.Y.a	Rice photosynthetic productivity and psii photochemistry under nonflooded irrigation	The Scientific World Journal	2014		2014		
41224	0	Song Z.Z.a b, Yang S.Y.b c, Zuo J.c d, Su Y.H.b	Over-expression of ApKUP3 enhances potassium nutrition and drought tolerance in transgenic rice	Biol. Plant.	58	649-658	2014		
41225	0	Yang Y.a, Xiao Z.a b, Liu H.a, Gao Y.a, Ye H.c, Wang Z.c	The research of passive effect for rice bran lipase by extruder	Journal of Chinese Institute of Food Science and Technology	14	90-99	2014		
41226	0	Yang X.a b, Tang X.a b, Wen X.a b, Li Y.a b, Zhou X.a	Effects of sowing date on 2-acetyl-1-pyrroline content and yield of late season aromatic rice	Shengtai Xuebao/ Acta Ecologica Sinica	34	1156-1164	2014		
41227	0	Liu Z.J.a, Zhou W.a, Shen J.B.b, Li S.T.a, Liang G.Q.a, Wang X.B.a, Sun J.W.a, Ai C.a	Soil Quality Assessment of Acid Sulfate Paddy Soils with Different Productivities in Guangdong Province, China	Journal of Integrative Agriculture	13	177-186	2014		
41228	0	Zhu Y., Xue B., Wang A., Wang W., Zhou A., Huang S., Liu Y.	Comprehensive bioinformatic analysis of bZIP transcription factors in Solanum lycopersicum	Chinese Journal of Applied and Environmental Biology	20	767-774	2014		
41229	0	Zuo S.M., Zhu Y.J., Yin Y.J., Wang H., Zhang Y.F., Chen Z.X., Gu S.L., Pan X.B.	Comparison and confirmation of quantitative trait loci conferring partial resistance to rice sheath blight on chromosome 9	Plant Dis.	98	957-964	2014		
41231	0	Wang C.a b, Xu F.a, Zhang M.b c	Effect of ultrasound time on physicochemical and functional properties of rice bran protein	Journal of the Chinese Cereals and Oils Association	29	43-47 and 56	2014		
41232	0	He H.B.a, Yang R.a, Chen L.b, Fan H.a, Wang X.a, Wang S.Y.a, Cheng H.W.a, Ma F.Y.a	Rice root system spatial distribution characteristics at flowering stage and grain yield under plastic mulching drip irrigation (PMDI)	Journal of Animal and Plant Sciences	24	290-301	2014		
41233	0	Zhang P.a b, Deng H.a, Liu Y.a c	Interaction of arginine/serine-rich proteins from different subfamilies of rice	Chinese Journal of Applied and Environmental Biology	20	144-147	2014		
41234	0	Li Y.Y.a, Tao H.J.a, Zhao X.Q.b, Xu J.a, Li G.M.a, Hu S.K.a, Dong G.J.a, Shi Z.Y.a, Wu L.W.a, Hu J.a, Ye G.Y.b, Guo L.B.a	Molecular improvement of grain weight and yield in rice by using GW6 gene	Rice Science	21	127-132	2014		
41235	0	Lu Z.B.a, Han N.S.a, Tian J.C.a b, Peng Y.F.c, Hu C.a, Guo Y.Y.c, Shen Z.C.a, Ye G.Y.a	Transgenic cry1Ab/vip3H+epsps Rice with Insect and Herbicide Resistance Acted No Adverse Impacts on the Population Growth of a Non-Target Herbivore, the White-Backed Planthopper, Under Laboratory and Field Conditions	Journal of Integrative Agriculture	13	2678-2689	2014		
41236	0	Liu Q.H., Wu X., Chen B.C., Xin C.Y., Chen F., Wang Y., Sun Z.W., Ma J.Q.	Effects of different irrigation methods on grain quality of japonica rice in Huanghuai District of China	Chinese Journal of Applied Ecology	25	2583-2590	2014		
41237	0	Wu Z.M.a, Zhang X.b, Wang J.L.b, Wan J.M.b	Leaf chloroplast ultrastructure and photosynthetic properties of a chlorophyll-deficient mutant of rice	Photosynthetica	52	217-222	2014		
41238	0	Wang H.T.a, Jin F.a, Jiang Y.J.b, Lin Q.S.c, Xu H.a, Cheng L.a, Xia Y.J.a, Liu C.X.a, Chen W.F.a, Xu Z.J.a	Effect of Environment and Genetic Recombination on Subspecies and Economic Trait Differentiation in the F2 and F3 Generations from indica-japonica Hybridization	Journal of Integrative Agriculture	13	18-30	2014		
41239	0	Zhang H.L.a c, Huang J.Z.a, Chen X.Y.b, Tan Y.Y.a, Shu Q.Y.a c	Competitive amplification of differentially melting amplicons facilitates efficient genotyping of photoperiod- and temperature-sensitive genic male sterility in rice	Molecular Breeding	34	1765-1776	2014		
41240	0	Miao L.Y.a, Zhou L.b, Yang S.a, Li L.Y.a, Li X.J.a, Fan W.a, Lan J.P.a, Shi J.N.a, Liu L.J.a, Liu G.Z.a	Characterization of transcription, expression and binding properties with W-box of rice transcription factor WRKY42 Gene	Progress in Biochemistry and Biophysics	41	682-692	2014		
41241	25195461	Yang Y.Y., Mei F., Zhang W., Shen Z., Fang J.	Creation of Bt rice expressing a fusion protein of Cry1Ac and Cry1I-like using a green tissue-specific promoter	J. Econ. Entomol.	107	1674-1679	2014		
41242	0	Sun J.a, Zou D.T.a, Luan F.S.b, Zhao H.W.a, Wang J.G.a, Liu H.L.a, Xie D.W.a, Su D.Q.c, Ma J.a, Liu Z.L.a	Dynamic QTL analysis of the Na+ content, K+ content, and Na+/K+ ratio in rice roots during the field growth under salt stress	Biol. Plant.	58	689-696	2014		
41243	0	Tang X.a c, Zhou X.a, Wu J.a e, Li J.d, Bai L.b d	A novel function of sanshools: The alleviation of injury from metolachlor in rice seedlings	Pestic Biochem Physiol	110	44-49	2014		
41244	0	Duan B.B., Lu W.	Hydrogen sulfide alleviates rice photoinhibition by promoting the activity of photosystem II in strong light stress	Zhiwu Shengli Xuebao/Plant Physiology Journal	50	1019-1026	2014		
41245	0	Wang J.a b, Zou D.b, Zheng H.b, Zhao H.b, Liu H.b, Jiang T.a	Genetic relationships between plant height and its components in Japonica rice	Agron J	106	1379-1388	2014		
41246	0	Xu F.F., Tang F.F., Shao Y.F., Chen Y.L., Tong C., Bao J.S.	Genotype ~ environment interactions for agronomic traits of rice revealed by association mapping	Rice Science	21	133-141	2014		
41247	0	Yu R., Xu X., Liang Y., Tian H., Pan Z., Jin S., Wang N., Zhang W.	The insect ecdysone receptor is a good potential target for RNAi-based pest control	Int. J. Biol. Sci.	10	1171-1180	2014		
41248	0	Guo S., Zhang T., Xing Y., Zhu X., Sang X., Ling Y., Wang N., He G.H.	Identification and gene mapping of an early senescence leaf 4 mutant of rice	Crop Sci.	54	2713-2723	2014		
41249	0	Deng L.a b, Chen F.a, Jiang L.a b, Lam H.M.c, Xiao G.a	Ectopic expression of GmPAP3 enhances salt tolerance in rice by alleviating oxidative damage	Plant Breeding	133	348-355	2014		
41250	0	Zhou M.L.a b, Zhang Q.a, Sun Z.M.b, Chen L.H.c, Liu B.X.b, Zhang K.X.b, Zhu X.M.d, Shao J.R.a, Tang Y.X.b, Wu Y.M.b	Trehalose Metabolism-Related Genes in Maize	J. Plant Growth Regul.	33	256-271	2014		
41251	0	WANG W.X., LAI F.X., LI K.L., FU Q.	Selection of Reference Genes for Gene Expression Analysis in Nilaparvata lugens with Different Levels of Virulence on Rice by Quantitative Real-Time PCR	Rice Science	21	305-311	2014		
41252	0	Zhang F., Wu X.N., Zhou H.M., Wang D.F., Jiang T.T., Sun Y.F., Cao Y., Pei W.X., Sun S.B., Xu G.H.	Overexpression of rice phosphate transporter gene OsPT6 enhances phosphate uptake and accumulation in transgenic rice plants	Plant Soil	384	259-270	2014		
41253	0	Zhou W., Lou Y.	Effect of controlled-release nitrogen fertilizer on CH4 emission in transgenic rice from a paddy soil	Shengtai Xuebao/ Acta Ecologica Sinica	34	4555-4560	2014		
41254	0	Rehmani M.I.A.a b c, Wei G.a b, Hussain N.d, Ding C.a b, Li G.a b, Liu Z.a b, Wang S.a b, Ding Y.a b	Yield and quality responses of two indica rice hybrids to post-anthesis asymmetric day and night open-field warming in lower reaches of Yangtze River delta	Field Crops Res.	156	231-241	2014		
41255	0	Yang Y.a, Shi C.a, Zhou Y.b, Wu J.c, Jin X.a, Shou J.a	Morphological characteristics and gene mapping of a dense panicle (dp2) mutant in rice (Oryza sativa L.)	Genes and Genomics	36	313-319	2014		
41256	0	Ding Y., Feng R., Wang R., Guo J., Zheng X.	A dual effect of Se on Cd toxicity: Evidence from plant growth, root morphology and responses of the antioxidative systems of paddy rice	Plant Soil	375	289-301	2014		
41257	0	He Y., Zhan F., Zu Y., Liu C., Li Y.	Effect of elevated UV-B radiation on the antioxidant system of two rice landraces in paddy fields on Yuanyang terrace	Int J Agric Biol	16	585-590	2014		
41258	0	Shu X., Sun J., Wu D.	Effects of grain development on formation of resistant starch in rice	Food Chem	164	89-97	2014		
41259	0	Ding H.a, Lu H.c, Lavoie M.b, Xie J.a, Li Y.a, Lv X.a, Fu Z.a, Qian H.a d	Unraveling the toxicity mechanisms of the herbicide diclofop-methyl in rice: Modulation of the activity of key enzymes involved in citrate metabolism and induction of cell membrane anion channels	J. Agric. Food Chem.	62	10654-10660	2014		
41260	0	Chen J.a, Mo Y.W.b c, Xu H.W.d	Calcium signaling is involved in negative phototropism of rice seminal roots	Rice Science	21	39-46	2014		
41261	0	Zhao Y.Y.a, Wang D.F.a, Wu T.Q.b, Guo A.c, Dong H.S.a, Zhang C.L.a	Transgenic expression of a rice riboflavin synthase gene in tobacco enhances plant growth and resistance to Tobacco mosaic virus	Canadian Journal of Plant Pathology	36	100-109	2014		
41262	0	Pan X.a, Li Y.a, Zhang H.b, Huang R.b, Liu W.a, Ming J.a, Liu S.a, Li X.a	Expression of signalling and defence-related genes mediated by over-expression of JERF1, and increased resistance to sheath blight in rice	Plant Pathol.	63	109-116	2014		
41263	0	Zhang W., Xing F., Selvaraj J.N., Liu Y.	Comparison of DNA extraction methods for GM Rice and GM rice-derived food products in China	J. Food Biochem.	38	388-396	2014		
41264	0	Zhang X.C., Alim M.A., Lin Z.M., Liu Z.H., Li G.H., Wang Q.S., Wang S.H., Ding Y.F.	Analysis of variations in white-belly and white-core rice kernels within a panicle and the effect of panicle type	Journal of Integrative Agriculture	13	1672-1679	2014		
41265	0	Niu X.a, Xiong F.b, Liu J.a, Sui Y.a, Zeng Z.b, Lu B.R.c, Liu Y.a b d	Co-expression of ApGSMT and ApDMT promotes biosynthesis of glycine betaine in rice (Oryza sativa L.) and enhances salt and cold tolerance	Environ. Exp. Bot.	104	16-25	2014		
41266	0	Ren Y.a b, Tang Y.a b, Xie K.a b, Li W.a b, Ye S.a b, Gao F.a b, Zou T.a b, Li X.a b, Deng Q.a b, Wang S.a b, Zheng A.a b, Zhu J.a b, Liu H.a b, Wang L.a b, Li P.a b c, Li S.a b	Mutation of a U-box E3 ubiquitin ligase results in brassinosteroid insensitivity in rice	Molecular Breeding	34	115-125	2014		
41267	0	Hou X.J., Liu S.R., Khan M.R.G., Hu C.G., Zhang J.Z.	Genome-Wide Identification, Classification, Expression Profiling, and SSR Marker Development of the MADS-box gene Family in Citrus	Plant Molecular Biology Reporter	32	28-41	2014		
41268	0	Guo T., Liao M.	Suppression of Rhizoctonia solani and induction of host plant resistance by Paenibacillus kribbensis PS04 towards controlling of rice sheath blight	Biocontrol Sci Technol	24	116-121	2014		
41269	0	Marcaida M.a, Li T.a, Angeles O.a, Evangelista G.K.a, Fontanilla M.A.a, Xu J.b, Gao Y.b, Li Z.b, Ali J.a	Biomass accumulation and partitioning of newly developed Green Super Rice (GSR) cultivars under drought stress during the reproductive stage	Field Crops Res.	162	30-38	2014		
41270	0	Zhang Y.H.a, Huang L.H.b	Effect of heat-induced formation of rice bran protein fibrils on morphological structure and physicochemical properties in solutions and gels	Food Sci. Biotechnol.	23	1417-1423	2014		
41271	0	Chen Y.N.a, Wie W.H.a, Ren X.P.a, Zhao X.Y.a, Zhou X.J.a, Huang L.a, Tang X.C.b, Jiang H.F.a	Construction of a high-quality genomic BAC library for Chinese peanut cultivar Zhonghua 8 with high oil content	Botanical Studies	55		2014		
41272	0	Cai R., Zhao Y., Wang Y., Lin Y., Peng X., Li Q., Chang Y., Jiang H., Xiang Y., Cheng B.	Overexpression of a maize WRKY58 gene enhances drought and salt tolerance in transgenic rice	Plant Cell Tissue Organ Cult.	119	565-577	2014		
41273	0	Song W., Zhang M., Gan X., Lu R.	Regression analysis of relationship of quality indexes and volatile compounds in japonica rice during storage	Journal of the Chinese Cereals and Oils Association	29	97-103	2014		
41274	0	Zhang Z.C., Li Y.F., Zhang B., Yang X.	Influence of weeds in Echinochloa on growth and yield of rice	Chinese Journal of Applied Ecology	25	3177-3184	2014		
41275	0	Zhu Y.a, Zuo S.a, Chen Z.a, Chen X.a, Li G.a, Zhang Y.a, Zhang G.b, Pan X.c	Identification of two major rice sheath blight resista1nce QTLs, qSB1-1HJX74 and qSB11HJX74, in field trials using chromosome segment substitution lines	Plant Dis.	98	1112-1121	2014		
41276	0	Wang L., Zhang F.C., Jing Y.S., Jiang X.D., Yang S.B., Han X.M.	Multi-temporal detection of rice phenological stages using canopy stagespectrum	Rice Science	21	108-115	2014		
41277	0	Yang C., Wang Z., Yang X., Lu B.R.	Segregation distortion affected by transgenes in early generations of rice crop-weed hybrid progeny: Implications for assessing potential evolutionary impacts from transgene flow into wild relatives	J Syst Evol	52	466-476	2014		
41278	0	Zhang W., Xing F., Selvaraj J.N., Liu Y.	Degradation of Endogenous and Exogenous Genes of Genetically Modified Rice with Cry1Ab during Food Processing	J. Food Sci.	79	T1055-T1065	2014		
41279	0	Sheng Y.a, Qi X.a, Liu Y.a, Guo M.a, Chen S.a, He X.a b, Huang K.a b, Xu W.a b	Subchronic toxicity study in vivo and allergenicity study in vitro for genetically modified rice that expresses pharmaceutical protein (human serum albumin)	Food and Chemical Toxicology	72	242-246	2014		
41281	24737465	Jiang X.H.a b, She C.W.b, Zhu Y.H.a, Liu X.M.a	Cloning and expression analysis of the Lonicera japonica Thunb. chlorogenic acid synthetase gene (LjCCoAOMT1) in rice	Genetics and Molecular Research	13	2166-2176	2014		
41282	0	Yang W.a, Zhang H.a, Li M.a, Wang Z.b, Zhou J.c, Wang S.c, Lu G.b, Fu F.a b	Early diagnosis of blast fungus, Magnaporthe oryzae, in rice plant by using an ultra-sensitive electrically magnetic-controllable electrochemical biosensor	Anal. Chim. Acta	850	85-91	2014		
41283	0	Ji Z.a c, Shi J.b, Zeng Y.a, Qian Q.a c, Yang C.a	Application of a simplified marker-assisted backcross technique for hybrid breeding in rice	Biologia (Poland)	69	463-468	2014		
41284	0	Kang G.P.a b, Dai X.J.a, Ou L.J.a, Li W.J.a, Liang M.Z.a, Chen L.B.a	Effects of cytoplasm on the fertility of thermo-sensitive genetic male sterile (TGMS) lines of rice	Aust J Crop Sci	8	999-1004	2014		
41285	0	Kim Y.a, Wang M.a, Bai Y.a, Zeng Z.a, Guo F.a, Han N.a, Bian H.a, Wang J.a, Pan J.b, Zhu M.a	Bcl-2 suppresses activation of VPEs by inhibiting cytosolic Ca2+ level with elevated K+ efflux in NaCl-induced PCD in rice	Plant Physiology and Biochemistry	80	168-175	2014		
41286	0	Yan W.a b, Chen G.H.b, Yang L.F.b, Gai J.Y.a, Zhu Y.L.a b b	Overexpression of the rice phosphate transporter gene OsPT6 enhances tolerance to low phosphorus stress in vegetable soybean	Sci. Hortic.	177	71-76	2014		
41287	0	Shi Y.a, Zhao G.a, Xu X.a, Li J.a b	Discovery of a new fragrance allele and development of functional markers for identifying diverse fragrant genotypes in rice	Molecular Breeding	33	701-708	2014		
41288	0	Guo J.a, Wang F.b, Zhang X.S.b	Knockdown expression of the B-type cyclin gene Orysa;CycB1;1 leads to triploid rice	Journal of Plant Biology	57	43-47	2014		
41289	24200857	Zhang M., Zhuo Q., Tian Y., Piao J., Yang X.	Long-term toxicity study on transgenic rice with Cry1Ac and sck genes	Food and Chemical Toxicology	63	76-83	2014		
41290	0	Ni J.a b, Shen Y.X.a, Zhang Y.Y.a, Liu Y.b	Histological characterization of the lateral root primordium development in rice	Botanical Studies	55		2014		
41291	0	Li G.a b, Xu Q.L.a, He C.M.a, Zeng L.a, Wang H.F.a	Two new anti-fungal diterpenoids from the husks of Oryza sativa	Phytochem Lett	10	309-312	2014		
41292	0	Jiang Y.a, Meng J.a, Zhang L.a, Cai M.a, Li C.a, Zhan M.a, Wang J.a, Wang B.a b, Mohamed I.a c, Cao C.a	Non-target effects of Bt transgenes on grain yield and related traits of an elite restorer rice line in response to nitrogen and potassium applications	Field Crops Res.	169	39-48	2014		
41293	0	Chen L.S.a b, Wang K.a b	Diagnosing of rice nitrogen stress based on static scanning technology and image information extraction	Journal of Soil Science and Plant Nutrition	14	382-393	2014		
41294	0	Zuo S.M., Zhang Y.F., Chen Z.X., Jiang W., Feng M.H., Pan X.B.	Improvement of Rice Resistance to Sheath Blight by Pyramiding QTLs Conditioning Disease Resistance and tiller angle	Rice Science	21	318-326	2014		
41295	0	Li P., Feng F., Zhang Q., Chao Y., Gao G., He Y.	Genetic mapping and validation of quantitative trait loci for stigma exsertion rate in rice	Molecular Breeding	34	2131-2138	2014		
41296	0	Li W.T., Chen W.L., Yang C., Wang J., Yang L., He M., Wang J.C., Qin P., Wang Y.P., Ma B.T., Li S.G., Chen X.W.	Identification and network construction of zinc finger protein (ZFP) genes involved in the rice-Magnaporthe oryzae interaction	Plant OMICS	7	540-548	2014		
41297	0	Li Z., Wang F., Lei B., Cao Z., Pan G., Cheng F.	Genotypic-dependent alteration in transcriptional expression of various CAT isoenzyme genes in esl mutant rice and its relation to H2O2-induced leaf senescence	Plant Growth Regul.	73	237-248	2014	_,CATB,NOE1,CATA	ESL,CatB, CAT-B, OsCatB, OsCATB, OsCAT1B, CAT1B, CAT2, OsCAT2,CATC, OsCat, OsCatC, OsCATC, OsNOE1, noe1, catC, OsCATC, CAT3, OsCAT3, LLM9428, OsLLM9428,CATA1, Cat A1*, OSCAT-A, Cat2, CatA1, CAT-A, OsCatA, OsCAT, CAT, catA, OSCATA, OsCATc, OsCATA, OsCAT1A, CAT1, OsCAT1, OsCATC, OsCAT2
41298	0	Hu W.a, Lv Y.b, Lei W.a, Li X.a, Chen Y.a, Zheng L.a, Xia Y.a, Shen Z.a	Cloning and characterization of the Oryza sativa wall-associated kinase gene OsWAK11 and its transcriptional response to abiotic stresses	Plant Soil	384	335-346	2014		
41299	0	Luo L.L.a b, Zhang Y.X.a, Chen D.B.a, Zhan X.D.a, Shen X.H.a, Cheng S.H.a, Cao L.Y.a	QTL mapping for hull thickness and related traits in hybrid rice xieyou 9308	Rice Science	21	29-38	2014		
41300	0	Ou S.Q.a, Gao J.a, Peng D.L.b, Qi C.Y.c, Zhang J.H.d, Meng Y.d, Lu B.H.d	First report of Aphelenchoides besseyi causing white tip disease of rice in Jilin Province, China	Plant Dis.	98	1165	2014		
41301	0	Zhao F.Y.a, Wang K.a, Zhang S.Y.b, Ren J.a, Liu T.a, Wang X.a	Crosstalk between ABA, auxin, MAPK signaling, and the cell cycle in cadmium-stressed rice seedlings	Acta Physiologiae Plantarum	36	1879-1892	2014		
41302	0	Li L.a, Xue X.a, Chen Z.a, Zhang Y.a, Ma Y.b, Pan C.c, Zhu J.c, Pan X.a, Zuo S.a	Isolation and characterization of rl(t), a gene that controls leaf rolling in rice	Chinese Science Bulletin	59	3142-3152	2014		
41303	0	Peng X.a, Liu R.a, Yang J.b c, Ding X.a, Wang F.a, Li Y.b c, Cai Y.d	Construction and identification of a mixed cDNA library of rice roots under salt and drought stress using Gateway technology	Chinese Journal of Applied and Environmental Biology	20	291-294	2014		
41304	0	Zhou X.Q., Wang L.Z., Zhang Y.R., Lun L.F., Zhang Z.C., Cui Y.K.	Storage quality changes and correlation analysis of rice after low temperature released	Modern Food Science and Technology	30	42-46+17	2014		
41305	0	Weng L.a, Deng L.a, Lai F.b, Xiao G.a	Optimization of the Cry2Aa gene and development of insect-resistant and herbicide-tolerant photoperiod-sensitive genic male sterile rice	Czech Journal of Genetics and Plant Breeding	50	19-25	2014		
41306	0	Shen C.a, Li D.c, He R.a, Fang Z.a, Xia Y.b, Gao J.a, Shen H.b, Cao M.a b	Comparative transcriptome analysis of RNA-seq data for cold-tolerant and cold-sensitive rice genotypes under cold stress	Journal of Plant Biology	57	337-348	2014		
41307	0	Wang Y.a, Zhang L.b, Li Y.a, Liu Y.a, Han L.a, Zhu Z.b, Wang F.c, Peng Y.a	Expression of Cry1Ab protein in a marker-free transgenic bt rice line and its efficacy in controlling a target pest, chilo suppressalis (Lepidoptera: Crambidae)	Environ. Entomol.	43	528-536	2014		
41308	0	Wu H.a, Liu Y.a, He J.a, Liu Y.a, Jiang L.a, Liu L.a, Wang C.a, Cheng X.a, Wan J.a b	Fine mapping of brown planthopper (Nilaparvata lugens Stal) resistance gene Bph28(t) in rice (Oryza sativa L.)	Molecular Breeding	33	909-918	2014		
41309	0	Zhang Q.a, Xiang J.a b, Zhang L.c, Zhu X.a, Evers J.d, van der Werf W.d, Duan L.a	Optimizing soaking and germination conditions to improve gamma-aminobutyric acid content in japonica and indica germinated brown rice	J Funct Foods	10	283-291	2014		
41310	0	Zhou Y.L.a b, Xie X.W.a, Zhang F.a b, Wang S.c, Liu X.Z.c, Zhu L.H.a, Xu J.L.a b, Gao Y.M.a b, Li Z.K.a b	Detection of quantitative resistance loci associated with resistance to rice false smut (Ustilaginoidea virens) using introgression lines	Plant Pathol.	63	365-372	2014		
41311	0	Zhang X.a b, Xiong H.c, Liu A.a b, Zhou X.a b, Peng Y.b, Li Z.a, Luo G.a, Tian X.d, Chen X.a b	Microarray data uncover the genome-wide gene expression patterns in response to heat stress in rice post-meiosis panicle	Journal of Plant Biology	57	327-336	2014		
41312	0	Zhen X.H.a, Xu J.G.a, Shen W.J.a, Zhang X.J.a, Zhang Q.J.b, Lu C.G.b, Chen G.X.a c, Gao Z.P.a	Photosynthetic Characteristics of Flag Leaves in Rice White Stripe Mutant 6001 During Senescence Process	Rice Science	21	335-342	2014		
41313	0	Jian Z.a, Wang F.a, Li Z.a, Chen Y.a, Ma X.a, Nie L.a, Cui K.a, Peng S.a, Lin Y.a, Song H.b, Li Y.a, Huang J.a	grain yield and nitrogen use efficiency responses to N application in Bt (Cry1Ab/Ac) transgenic two-line hybrid rice	Field Crops Res.	155	184-191	2014		
41314	0	Xu W., Liu X., Xie L., Ying Y.	Comparison of fourier transform near-infrared, visible near-infrared, mid-infrared, and raman spectroscopy as non-invasive tools for transgenic rice discrimination	Transactions of the ASABE	57	141-150	2014		
41315	0	Hou C.a, Lv T.a, Zhan Y.a, Peng Y.a, Huang Y.b, Jiang D.a, Weng X.a	Overexpression of the RIXI xylanase inhibitor improves disease resistance to the fungal pathogen, Magnaporthe oryzae, in rice	Plant Cell Tissue Organ Cult.	120	167-177	2014		
41316	0	Hu T.	A glutathione S-transferase confers herbicide tolerance in rice [Uma glutationa S-transferase confere tolerancia a herbicida em arroz]	Crop Breeding and Applied Biotechnology	14	76-81	2014		
41317	0	Chen H., Shan J., Yang K., Wang Y.Y., Lu C.M.	Abundant variation of Waxy gene in Yunnan Rice landraces and molecular characterization of a novel Wxzm allele	Crop Sci.	54	2152-2159	2014		
41318	0	Zhang B.a b, Sun C.b, Xie D.a, Tan L.b	Global gene expression analysis of a rice high-tillering dwarf mutant	Genes and Genomics	36	485-496	2014		
41319	0	Chu X., Guo Y., He J., Yao X., Zhu Y., Cao W., Cheng T., Tian Y.	Comparison of different hyperspectral vegetation indices for estimating canopy leaf nitrogen accumulation in rice	Agron J	106	1911-1920	2014		
41320	0	Li X.D.a b, Yang Y.J.a, Tian J.C.a, Xu H.X.a, Zheng X.S.a, Lu Z.X.a b	Ecological responses of brown planthopper, Nilaparvata lugens, to triazophos and deltamethrin on transgenic Bt rice lines and their non-Bt parental rice	Chinese Journal of Applied Ecology	25	3006-3010	2014		
41321	0	Chen S.a, Zheng X.b, Wang D.a, Xu C.a, Zhang X.a	Effect of Enhanced Panicle Fertilization on Nitrogen Use Efficiency Traits of Rice (Oryza Sativa) with Different Planting Patterns	J Plant Nutr	37	1316-1326	2014		
41322	0	Chen Y.a, Jin J.H.a, Jiang Q.S.a, Yu C.L.a, Chen J.b, Xu L.G.a, Jiang D.A.a	Sodium bisulfite enhances photosynthesis in rice by inducing Rubisco activase gene expression	Photosynthetica	52	475-478	2014		
41323	0	Zheng X., Chen S., Li Q., Lin R., Lin W.	Determination of Phenolic Acids in Root Exudates of Allelopathic Rice by Solid Phase Extraction-Ion Chromatography with Conductivity Detection	Anal Lett	47	2156-2164	2014		
41324	24390331	Yao M.a, Liu X.a, Li S.b, Xu Y.c, Zhou Y.b, Zhou X.c d, Tao X.a	Rice stripe tenuivirus NSvc2 glycoproteins targeted to the golgi body by the N-terminal transmembrane domain and adjacent cytosolic 24 amino acids via the COP I- and COP II-dependent secretion pathway	J. Virol.	88	3223-3234	2014		
41325	0	Zhang Z.Y.a b, Meng J.a b, Dang S.b, Chen W.F.a b b	Effect of biochar on relieving cadmium stress and reducing accumulation in super japonica rice	Journal of Integrative Agriculture	13	547-553	2014		
41326	0	Bian J., He H., Shi H., Zhu G., Li C., Zhu C., Peng X., Yu Q., Fu J., He X., Chen X., Hu L., Ouyang L.	Quantitative trait loci mapping for flag leaf traits in rice using a chromosome segment substitution line population	Plant Breeding	133	203-209	2014		
41327	24472210	Lu Z.B.a, Tian J.C.b, Wang W.a, Xu H.X.b, Hu C.a, Guo Y.Y.c, Peng Y.F.c, Ye G.Y.a	Impacts of Bt rice expressing Cry1C or Cry2A protein on the performance of nontarget leafhopper, Nephotettix cincticeps (Hemiptera: Cicadellidae), under laboratory and field conditions	Environ. Entomol.	43	209-217	2014		
41328	0	Liu H.a, Xiao Z.a, Wang N.a, Wang P.a, Ma T.b	Study on ultrasound-assisted extraction and properties of rice bran protein	Nongye Jixie Xuebao/Transactions of the Chinese Society for Agricultural Machinery	45	235-241	2014		
41329	0	Xu J.a, Deng Y.a, Li Q.a, Zhu X.b, He Z.a	stripe2 Encodes a Putative dCMP Deaminase that Plays an Important Role in Chloroplast Development in Rice	Journal of Genetics and Genomics	41	539-548	2014	ST2	ALR, OsDCD, DCD
41330	0	Qin X.a, Zhang R.a, Zhang J.b, Shi Y.c	Physiological efects of paichongding applied to rice on the Nilaparvata lugens (Sta l), the brown planthopper	Arch. Insect Biochem. Physiol.	87	72-84	2014		
41331	0	Song Y.a b, Liu H.b	The allelopathic effect of ginseng root exudates on rice seeds	J Chem Pharm Res	6	785-789	2014		
41332	0	Yin Z.J.a, Liu H.L.a, Dong X.a, Tian L.a, Xiao L.a, Xu Y.N.b, Qu L.Q.a	Increasing alpha-linolenic acid content in rice bran by embryo-specific expression of omega3/Delta15-desaturase gene	Molecular Breeding	33	987-996	2014		
41333	0	Chen Z.X.a, Zhang Y.F.a, Feng F.a, Feng M.H.a, Jiang W.a, Ma Y.Y.c, Pan C.H.d, Hua H.L.b, Li G.S.b, Pan X.B.a, Zuo S.M.a	Improvement of japonica rice resistance to sheath blight by pyramiding qSB-9TQ and qSB-7TQ	Field Crops Res.	161	118-127	2014		
41334	0	Gao Y.a, Xiao Z.a b, Liu H.a, Yang Y.a, Liang Z.c, Tian J.c	Extrusion passivating parameters of peroxidase in full-fat rice bran	Journal of the Chinese Cereals and Oils Association	29	79-86	2014		
41335	0	Chen Q.F.a, Ya H.Y.a, Wang W.D.a, Jiao Z.a, Ya H.Y.b	RNA-seq reveals the downregulated proteins related to photosynthesis in growth-inhibited rice seedlings induced by low-energy N+ beam implantation	Genetics and Molecular Research	13	7029-7036	2014		
41336	0	Cai J.a b, Dai Z.J.b, Zhu H.T.b, Zeng R.Z.b, Zhang Z.M.b, Ma T.T.a, Zhang G.Q.b	Comparative analysis of fertility restoration genes for WA, Y, and DA cytoplasmic male sterility in rice	Biol. Plant.	58	241-246	2014		
41337	0	Wang S.a, Fu H.W.b, Yang Y.Z.a	Stress effects of imidacloprid on RSV in rice plants	Chinese Journal of Applied Ecology	25	3593-3599	2014		
41338	0	Chen T., Zhang Y.D., Zhu Z., Zhao L., Zhao Q.Y., Zhou L.H., Yao S., Yu X., Wang C.L.	Development of new indel marker to detect genotypes of Rf-1a conferring fertility restoration of BT-type cytoplasmic male sterility in rice	Rice Science	21	13-19	2014		
41339	0	Mahmood K.a b e, Khan M.B.b c, Ijaz M.d, Zeng R.S.a b, Luo S.M.a b	Molecular, biochemical and bioassay based evidence of lower allelopathic potential in genetically modified rice	Plant Growth Regul.	74	73-82	2014		
41340	0	Tan M.a, Xu J.b, Li F.b, Zhang C.a	Physiological mechanisms of improving rice (Oryza sativa L.) seed vigor through arc-tooth-shaped corona discharge field treatment	Aust J Crop Sci	8	1495-1502	2014		
41341	0	Zhao F.M.a, Zhang G.Q.b, Yang Z.L.a, He G.H.a	Pyramiding QTL for yield-related traits and grain shape in rice using single-segment substitution lines	Indian Journal of Genetics and Plant Breeding	74	496-498	2014		
41342	0	Lang J., Zhu Y.	Comparison of two methods for determination of catalase activity in rice	Journal of the Chinese Cereals and Oils Association	29	89-93+99	2014		
41343	0	Sun R.a b c, Du P.b, Jiang L.b, An D.a, Li Y.b	Heterologous expression of artificial miRNAs from rice dwarf virus in transgenic rice	Plant Cell Tissue Organ Cult.	116	353-360	2014		
41344	0	Yang X.a, Jiang L.a, Yang C.a, Li H.a, Liu L.a, Wan J.a b	Semidwarf gene sdk has pleiotropic effects on rice (Oryza sativa L.) plant architecture	Plant Breeding	133	335-340	2014		
41345	0	Zhou L.a b, Yu H.a, Yu L.c, Zhang L.a, Sui Y.a, Ren S.a	Evaluation of light use efficiency using the chlorophyll fluorescence spectra	Nongye Jixie Xuebao/Transactions of the Chinese Society for Agricultural Machinery	45	255-259	2014		
41346	0	Xing W., Zhao H., Zou D.	Detection of main-effect and epistatic QTL for yield-related traits in rice under drought stress and normal conditions	Canadian Journal of Plant Science	94	633-641	2014		
41347	0	Xu D., Mou G., Wang K., Zhou G.	MicroRNAs responding to southern rice black-streaked dwarf virus infection and their target genes associated with symptom development in rice	Virus Res.	190	60-68	2014		
41348	0	Guo P.a b, Wu Y.a, Li J.a c, Fang R.a, Jia Y.a	Efficient transient expression to analyze miRNA targets in rice protoplasts	Shengwu Gongcheng Xuebao/Chinese Journal of Biotechnology	30	1751-1762	2014		
41349	0	Zhang Y.a, Huang L.b, Ting S.a, Wang S.a, Lin Y.a	Effect of ionic strength on formation and microstructure of self-assembly globulin nanofibrils and gels	Digest Journal of Nanomaterials and Biostructures	9	951-957	2014		
41350	0	Li P.a b, Dong J.a b, Yang S.a b, Bai L.a b, Wang J.a b, Wu G.a b, Wu X.a b, Yao Q.a b, Tang X.a b	Impact of beta-carotene transgenic rice with four synthetic genes on rhizosphere enzyme activities and bacterial communities at different growth stages	Eur. J. Soil Biol.	65	40-46	2014		
41351	0	Shao Y.a, Tang F.a, Huang Y.a, Xu F.a, Chen Y.a, Tong C.a, Chen H.b, Bao J.a	Analysis of genotype ~ environment interactions for polyphenols and antioxidant capacity of rice by association mapping	J. Agric. Food Chem.	62	5361-5368	2014		
41352	0	Shen H.C., Shi Y.F., Feng B.H., Wang H.M., Xu X., Huang Q.N., Lu X.G., Wu J.L.	Identification and genetic analysis of a novel rice spotted-leaf mutant with broad-spectrum resistance to xanthomonas oryzae pv. oryzae	Journal of Integrative Agriculture	13	713-721	2014		
41353	0	Yang P.M.a b, Huang Q.C.a, Qin G.Y.a, Zhao S.P.a, Zhou J.G.b	Different drought-stress responses in photosynthesis and reactive oxygen metabolism between autotetraploid and diploid rice	Photosynthetica	52	193-202	2014		
41354	0	Chen Y., Wang Y., Zhang H.	Genome-wide analysis of the mildew resistance locus o (MLO) gene family in tomato (Solanum lycopersicum L.)	Plant OMICS	7	87-93	2014		
41356	0	Chen R.a, Wang Y.a b, Zhu Z.a, Lan Q.a, Zhao X.a, Wang H.c, Guo Y.a, Wang Q.b	Development of the one-step visual loop-mediated isothermal amplification assay for genetically modified rice event TT51-1	Food Sci. Technol. Res.	20	71-77	2014		
41357	0	Yang L.a b, Du Z.a d, Gao F.c, Wu K.a b, Xie L.a b, Li Y.c, Wu Z.a b, Wu J.a b c	Transcriptome profiling confirmed correlations between symptoms and transcriptional changes in RDV infected rice and revealed nucleolus as a possible target of RDV manipulation	Virol. J.	11		2014		
41358	0	Chai L.a, Zhang J.a, Pan X.B.b, Zhang F.a, Zheng T.Q.a, Zhao X.Q.a, Wang W.S.a, Jauhar A.c, Xu J.L.a, Li Z.K.a	Advanced backcross QTL analysis for the whole plant growth duration salt tolerance in rice (Oryza sativa L.)	Journal of Integrative Agriculture	13	1609-1620	2014		
41359	0	Li X.M.a, Chen M.J.a, Li J.a, Ma L.J.a, Bu N.a, Li Y.Y.a, Zhang L.H.b	Effect of endophyte infection on chlorophyll a fluorescence in salinity stressed rice	Biol. Plant.	58	589-594	2014		
41360	0	Lu L., Zhu Z.	Prediction model for eating property of indica rice	J Food Qual	37	274-280	2014		
41361	0	Zhang W.J.a b, Li G.H.a b, Yang Y.M.b, Li Q.b, Zhang J.b, Liu J.Y.b, Wang S.b, Tang S.b, Ding Y.F.b	Effects of Nitrogen Application Rate and Ratio on Lodging Resistance of Super Rice with Different Genotypes	Journal of Integrative Agriculture	13	63-72	2014		
41362	0	Deng L.H.a b, Weng L.S.a b, Xiao G.Y.a	Optimization of EPSPS gene and development of double herbicide tolerant transgenic PGMS rice	Journal of Agricultural Science and Technology	16	217-228	2014		
41363	0	Guo L.B.a, Ye G.Y.b	Use of major quantitative trait loci to improve grain yield of rice	Rice Science	21	65-82	2014		
41364	0	Ai L.P., Shen A., Gao Z.C., Li Z.L., Sun Q.L., Li Y.Y., Luan W.J.	Reverse Genetic Analysis of Transcription Factor OsHox9, a Member of Homeobox Family, in Rice	Rice Science	21	312-317	2014		
41365	0	Man J.a b, Lin G.a b, Wang Z.c, Wang Y.a b, Liu Q.a b, Wei C.a b	Different structures of heterogeneous starch granules from High-amylose rice	J. Agric. Food Chem.	62	11254-11263	2014		
41366	0	Fu L., Yu X., An C.	OsCPK20 positively regulates Arabidopsis resistance against Pseudomonas syringae pv. tomato and rice resistance against Magnaporthe grisea	Acta Physiologiae Plantarum	36	273-282	2014		
41367	0	Cao X., Gong J., Chen M., Yu S., Bian Y., Cao Z.	Analysis of rice leaves proteomes by liquid chromatography-tandem mass spectrometry based on the purification using a novel affinity detergent removal spin column	Chinese Journal of Chromatography (Se Pu)	32	1181-1186	2014		
41368	0	Zhang S.a b, Li J.a, Lee D.a, Xu H.a, Zhang L.a, Dongchen W.a, Xiong H.a, Zhu Q.a, Zhang X.a, Chen L.a	Genetic differentiation of Asian weedy rice revealed with InDel markers	Crop Sci.	54	2499-2508	2014		
41369	0	Li X.Y., Qiang S., Song X.L., Cai K., Sun Y.N., Shi Z.H., Dai W.M.	Allele Types of Rc Gene of Weedy Rice from Jiangsu Province, China	Rice Science	21	252-261	2014		
41370	25192280	Chueasiri C., Chunthong K., Pitnjam K., Chakhonkaen S., Sangarwut N., Sangsawang K., Suksangpanomrung M., Michaelson L.V., Napier J.A., Muangprom A.	Rice ORMDL controls sphingolipid homeostasis affecting fertility resulting from abnormal pollen development.	PLoS ONE	9(9)	e106386	2014		
41371	25239516	Sagar M., Pandey N., Qamar N., Singh B., Shukla A.	Domain analysis of 3 Keto Acyl-CoA synthase for structural variations in Vitis vinifera and Oryza brachyantha using comparative modelling.	Interdiscip Sci			2014		
41372	25208476	Zhou H., Zhou M., Yang Y., Li J., Zhu L., Jiang D., Dong J., Liu Q., Gu L., Zhou L., Feng M., Qin P., Hu X., Song C., Shi J., Song X., Ni E., Wu X., Deng Q., Liu Z., Chen M., Liu Y.G., Cao X., Zhuang C.	RNase Z(S1) processes UbL40 mRNAs and controls thermosensitive genic male sterility in rice.	Nat Commun	5	4884	2014	UBL40-4,UBL40-2,UBL40-1,TMS5	UbL40-4, OsUbL40-4,UbL40-2, OsUbL40-2,UbL40-1, OsUbL40-1,tms5, NAC18, ONAC023, ONAC23, NAC23, TMS5/ONAC023, OsEnS-30
41373	25198435	Azizi P., Rafii M.Y., Abdullah S.N., Nejat N., Maziah M., Hanafi M.M., Latif M.A., Sahebi M.	Toward understanding of rice innate immunity against Magnaporthe oryzae.	Crit. Rev. Biotechnol.		1-10	2014		
41374	25246444	Chong J., Piron M.C., Meyer S., Merdinoglu D., Bertsch C., Mestre P.	The SWEET family of sugar transporters in grapevine: VvSWEET4 is involved in the interaction with Botrytis cinerea.	J. Exp. Bot.			2014		
41375	25245166	Lu J., Wang T., Xu Z., Sun L., Zhang Q.	Genome-wide analysis of the GRAS gene family in Prunus mume.	Mol. Genet. Genomics			2014		
41376	25273891	Ye N., Li H., Zhu G., Liu Y., Liu R., Xu W., Jing Y., Peng X., Zhang J.	Copper suppresses abscisic Acid catabolism and catalase activity, and inhibits seed germination of rice.	Plant Cell Physiol.	55(11)	2008-16	2014		
41377	25208645	Li R.Q., Huang J.Z., Zhao H.J., Fu H.W., Li Y.F., Liu G.Z., Shu Q.Y.	A down-regulated epi-allele of the genomes uncoupled 4 gene generates a xantha marker trait in rice.	Theor. Appl. Genet.	127(11)	2491-501	2014		
41378	25046435	Taniguchi M., Matsuhashi Y., Abe T.K., Ishiyama Y., Saitoh E., Kato T., Ochiai A., Tanaka T.	Contribution of cationic amino acids toward the inhibition of Arg-specific cysteine proteinase (Arg-gingipain) by the antimicrobial dodecapeptide, CL(14-25), from rice protein.	Biopolymers	102(5)	379-89	2014		
41379	25221924	Urarte E., Asensio A.C., Tellechea E., Pires L., Moran J.F.	Evaluation of the anti-nitrative effect of plant antioxidants using a cowpea Fe-superoxide dismutase as a target.	Plant Physiol. Biochem.	83	356-64	2014		
41380	25320558	Yan B., Liu R., Li Y., Wang Y., Gao G., Zhang Q., Liu X., Jiang G., He Y.	QTL analysis on rice grain appearance quality, as exemplifying the typical events of transgenic or backcrossing breeding.	Breed. Sci.	64(3)	231-9	2014		
41381	25284193	Nishizawa-Yokoi A., Endo M., Ohtsuki N., Saika H., Toki S.	Precision genome editing in plants via gene targeting and piggyBac-mediated marker excision.	Plant J.			2014		
41382	25345491	Cui L.G., Shan J.X., Shi M., Gao J.P., Lin H.X.	The miR156-SPL9-DFR pathway coordinates the relationship between development and abiotic stress tolerance in plants.	Plant J.			2014		
41383	25336336	Estioko L.P., Miro B., Baltazar A.M., Merca F.E., Ismail A.M., Johnson D.E.	Differences in responses to flooding by germinating seeds of two contrasting rice cultivars and two species of economically important grass weeds.	AoB Plants			2014		
41384	25311582	Xu Y., Iacuone S., Li S., Parish R.W.	MYB80 homologues in Arabidopsis, cotton and Brassica: regulation and functional conservation in tapetal and pollen development.	BMC Plant Biol.	14(1)	278	2014		
41385	25284137	Wang Y.N., Ke K.Q., Li Y.H., Han L.Z., Liu Y.M., Hua H.X., Peng Y.F.	Comparison of three transgenic Bt rice lines for insecticidal protein expression and resistance against a target pest, Chilo suppressalis (Lepidoptera: Crambidae).	Insect Science			2014		
41386	25190075	Lu X., Zhou Y., Wu T., Hao L.	Ameliorative effect of black rice anthocyanin on senescent mice induced by d-galactose.	Food Funct	5(11)	2892-7	2014		
41387	25344442	Xu D.B., Gao S.Q., Ma Y.Z., Xu Z.S., Zhao C.P., Tang Y.M., Li X.Y., Li L.C., Chen Y.F., Chen M.	ABI-like transcription factor gene TaABL1 from wheat improves multiple abiotic stress tolerances in transgenic plants.	Funct. Integr. Genomics			2014		
41388	25275554	Zhang L., Chen H., Li Y., Li Y., Wang S., Su J., Liu X., Chen D., Chen X.	Evaluation of the Agronomic Performance of Atrazine-Tolerant Transgenic japonica Rice Parental Lines for Utilization in Hybrid Seed Production.	PLoS ONE	9(9)	e108569	2014		
41389	25392067	Kido N., Yokoyama R., Yamamoto T., Furukawa J., Iwai H., Satoh S., Nishitani K.	The matrix polysaccharide (1;3,1;4)-beta-D-glucan is involved in silicon-dependent strengthening of rice cell wall.	Plant Cell Physiol.			2014		
41390	25572223	Swamy B.P., Kaladhar K., Reddy G.A., Viraktamath B.C., Sarla N.	Mapping and introgression of QTL for yield and related traits in two backcross populations derived from Oryza sativa cv. Swarna and two accessions of O. nivara.	J. Genet.	93(3)	643-54	2014		
41391	25488347	Dedicova B., Bermudez C., Prias M., Zuniga E., Brondani C.	High-throughput transformation pipeline for a Brazilian japonica rice with bar gene selection.	Protoplasma			2014		
41392	25481774	Kizhakkedath P., Jegadeeson V., Venkataraman G., Parida A.	A vacuolar antiporter is differentially regulated in leaves and roots of the halophytic wild rice Porteresia coarctata (Roxb.) Tateoka.	Mol. Biol. Rep.			2014		
41393	25492221	Terao T., Hirose T.	Control of grain protein contents through SEMIDWARF1 mutant alleles: SD1 increases the grain protein content in Dee-geo-woo-gen but not in Reimei.	Mol. Genet. Genomics			2014		
41394	25506299	Wang Y., Kwon S.J., Wu J., Choi J., Lee Y.H., Agrawal G.K., Tamogami S., Rakwal R., Park S.R., Kim B.G., Jung K.H., Kang K.Y., Kim S.G., Kim S.T.	Transcriptome Analysis of Early Responsive Genes in Rice during Magnaporthe oryzae Infection.	Plant Pathol. J.	30(4)	343-54	2014		
41395	25491793	Sengupta S., Das B., Acharyya P., Prasad M., Ghose T.	Genetic diversity analysis in a set of Caricaceae accessions using resistance gene analogues.	BMC Genet.	15(1)	137	2014		
41396	25443844	Meng Q., Rao L., Pan Y.	Enrichment and analysis of rice seedling Ubiquitin-related proteins using four UBA domains (GST-qUBAs).	Plant Sci.	229	172-80	2014		
41397	25572226	Mukherjee A., Sarkar S., Chakraborty A.S., Yelne R., Kavishetty V., Biswas T., Mandal N., Bhattacharyya S.	Phosphate acquisition efficiency and phosphate starvation tolerance locus (PSTOL1) in rice.	J. Genet.	93(3)	683-8	2014		
41398	25492397	Niu L., Lin H., Zhang F., Watira T.W., Li G., Tang Y., Wen J., Ratet P., Mysore K.S., Tadege M.	LOOSE FLOWER, a WUSCHEL-like Homeobox gene, is required for lateral fusion of floral organs in Medicago truncatula.	Plant J.			2014		
41399	25557147	Li X., Liu H., Wang M., Liu H., Tian X., Zhou W., Lv T., Wang Z., Chu C., Fang J., Bu Q.	Combinations of Hd2 and Hd4 genes determine rice adaptability to Heilongjiang Province, northern limit of China.	J Integr Plant Biol			2014		
41400	25263631	Zhao J., Zhang S., Yang T., Zeng Z., Huang Z., Liu Q., Wang X., Leach J., Leung H., Liu B.	Global transcriptional profiling of a cold-tolerant rice variety under moderate cold stress reveals different cold stress response mechanisms.	Physiol Plant			2014		
41401	25204204	Tuncel A., Cakir B., Hwang S.K., Okita T.W.	The role of the large subunit in redox regulation of the rice endosperm ADP-glucose pyrophosphorylase.	FEBS J.	281(21)	4951-63	2014		
41402	25268721	Kim G.R., Jung E.S., Lee S., Lim S.H., Ha S.H., Lee C.H.	Combined Mass Spectrometry-Based Metabolite Profiling of Different Pigmented Rice (Oryza sativa L.) Seeds and Correlation with Antioxidant Activities.	Molecules	19(10)	15673-86	2014		
41403	25213398	Zhang J.J., Wu S.Y., Jiang L., Wang J.L., Zhang X., Guo X.P., Wu C.Y., Wan J.M.	A detailed analysis of the leaf rolling mutant sll2 reveals complex nature in regulation of bulliform cell development in rice (Oryza sativa L.).	Plant Biol (Stuttg)			2014	SLL2	OsSLL2
41404	25195053	Qin B., Zhang Y., Wang M.	Molecular cloning and expression of a novel MYB transcription factor gene in rubber tree.	Mol. Biol. Rep.			2014		
41405	25205576	Kumar A., Dixit S., Ram T., Yadaw R.B., Mishra K.K., Mandal N.P.	Breeding high-yielding drought-tolerant rice: genetic variations and conventional and molecular approaches.	J. Exp. Bot.	65(21)	6265-78	2014		
41406	25253885	Gui J., Liu C., Shen J., Li L.	Grain setting defect1, Encoding a Remorin Protein, Affects the Grain Setting in Rice through Regulating Plasmodesmatal Conductance.	Plant Physiol.	166(3)	1463-78	2014	REM5.1,REM1.1,REM1.2,LP1,ACT1,REM1.5,REM4.1,REM4.3,REM0.1,REM5.2,REM4.2,REM0.2,REM6.3,REM6.4,GSD1,REM6.2,REM1.4,REM1.3,REM6.5,REM6.1	OsREM5.1,OsREM1.1,OsREM1.2,OsREM5.3, REM5.3, OsLP1,act1, AC1, RAC1, RAc1, ACT11, OsACT1,OsREM1.5,OsREM4.1,OsREM4.3,OsREM0.1,OsREM5.2,OsREM4.2,OsREM0.2,OsREM6.3,OsREM6.4,OsREM6.6, REM6.6, OsGSD1,OsREM6.2,OsREM1.4,OsREM1.3,OsREM6.5,OsREM6.1
41407	25231970	Miyata K., Kozaki T., Kouzai Y., Ozawa K., Ishii K., Asamizu E., Okabe Y., Umehara Y., Miyamoto A., Kobae Y., Akiyama K., Kaku H., Nishizawa Y., Shibuya N., Nakagawa T.	The Bifunctional Plant Receptor, OsCERK1, Regulates Both Chitin-Triggered Immunity and Arbuscular Mycorrhizal Symbiosis in Rice.	Plant Cell Physiol.	55(11)	1864-72	2014	CEBIP,AM11,AM1,CERK1,AM2,AM3	CEBiP, Os-LYP1, LYP1, OsCEBiP,AM11,OsAM1, prx53, OsPRX53,OsCERK1, OsLysM-RLK9, Os-CERK1, Os-LysM-RLK9, OsLysMRLK9, OsCERK1/OsLYK9, OsLYK9, LYK9,OsAM2, OsPI8-1a, PI8-1a,OsAM3, OsLysMe2, LysMe2
41408	25239514	Tripathi V., Tripathi P.	Molecular phylogenetics and comparative modeling of MnSOD, an enzyme involved during environmental stress conditions in Oryza sativa.	Interdiscip Sci			2014		
41409	25380642	Li J., Dai X., Li L., Jiao Z., Huang Q.	Metabolism of Reactive Oxygen Species in Cytoplasmic Male Sterility of Rice by Marking Upmost Pulvinus Interval.	Appl. Biochem. Biotechnol.			2014		
41410	25371505	Ueda Y., Frimpong F., Qi Y., Matthus E., Wu L., H?ller S., Kraska T., Frei M.	Genetic dissection of ozone tolerance in rice (Oryza sativa L.) by a genome-wide association study.	J. Exp. Bot.			2014		
41411	25399019	J?st M., Esfeld K., Burian A., Cannarozzi G., Chanyalew S., Kuhlemeier C., Assefa K., Tadele Z.	Semi-dwarfism and lodging tolerance in tef (Eragrostis tef) is linked to a mutation in the alpha-Tubulin 1 gene.	J. Exp. Bot.			2014		
41412	25398618	Vieira P., Wantoch S., Lilley C.J., Chitwood D.J., Atkinson H.J., Kamo K.	Expression of a cystatin transgene can confer resistance to root lesion nematodes in Lilium longiflorum cv. 'Nellie White'	Transgenic Res.			2014		
41413	25512028	Wong H.W., Liu Q., Sun S.S.	Biofortification of rice with lysine using endogenous histones.	Plant Mol. Biol.			2014		
41414	25551672	Wang K., Cui K., Liu G., Xie W., Yu H., Pan J., Huang J., Nie L., Shah F., Peng S.	Identification of quantitative trait loci for phosphorus use efficiency traits in rice using a high density SNP map.	BMC Genet.	15(1)	1276	2014		
41415	25471115	Coneva V., Simopoulos C., Casaretto J.A., El-Kereamy A., Guevara D.R., Cohn J., Zhu T., Guo L., Alexander D.C., Bi Y.M., McNicholas P.D., Rothstein S.J.	Metabolic and co-expression network-based analyses associated with nitrate response in rice.	BMC Genomics	15	1056	2014		
41416	25520726	Juntawong P., Sirikhachornkit A., Pimjan R., Sonthirod C., Sangsrakru D., Yoocha T., Tangphatsornruang S., Srinives P.	Elucidation of the molecular responses to waterlogging in Jatropha roots by transcriptome profiling.	Front Plant Sci	5	658	2014		
41417	25511432	Yano K., Aya K., Hirano K., Ordonio R.L., Ueguchi-Tanaka M., Matsuoka M.	Comprehensive Gene Expression Analysis of Rice Aleurone Cells: Probing the Existence of an Alternative Gibberellin Receptor(s).	Plant Physiol.			2014		
41418	25279141	Zamani Babgohari M., Ebrahimie E., Niazi A.	In silico analysis of high affinity potassium transporter (HKT) isoforms in different plants.	Aquat Biosyst	10	9	2014		
41419	25228384	Yan J., Zhang H., Zheng Y., Ding Y.	Comparative expression profiling of miRNAs between the cytoplasmic male sterile line MeixiangA and its maintainer line MeixiangB during rice anther development.	Planta			2014		
41420	25231963	Sudo E., Suzuki Y., Makino A.	Whole-Plant Growth and N Utilization in Transgenic Rice Plants with Increased or Decreased Rubisco Content under Different CO2 Partial Pressures.	Plant Cell Physiol.	55(11)	1905-11	2014		
41421	25188286	Fernandez J., Marroquin-Guzman M., Wilson R.A.	Evidence for a transketolase-mediated metabolic checkpoint governing biotrophic growth in rice cells by the blast fungus Magnaporthe oryzae.	PLoS Pathog.	10(9)	e1004354	2014		
41422	25069855	Paul S., Ali N., Datta S.K., Datta K.	Development of an iron-enriched high-yieldings indica rice cultivar by introgression of a high-iron trait from transgenic iron-biofortified rice.	Plant Foods Hum Nutr	69(3)	203-8	2014		
41423	25183458	Magbanua Z.V., Arick M., Buza T., Hsu C.Y., Showmaker K.C., Chouvarine P., Deng P., Peterson D.G., Lu S.	Transcriptomic dissection of the rice-Burkholderia glumae interaction.	BMC Genomics	15	755	2014		
41424	25231964	Han C., He D., Li M., Yang P.	In-depth proteomic analysis of rice embryo reveals its important roles in seed germination.	Plant Cell Physiol.	55(10)	1826-47	2014		
41425	25261161	Arora K., Rai A.K., Gupta S.K., Singh P.K., Narula A., Sharma T.R.	Phenotypic expression of blast resistance gene Pi54 is not affected by its chromosomal position.	Plant Cell Rep.			2014		
41426	25183745	Byeon Y., Yool Lee H., Choi D.W., Back K.	Chloroplast-encoded serotonin N-acetyltransferase in the red alga Pyropia yezoensis: gene transition to the nucleus from chloroplasts.	J. Exp. Bot.			2014		
41427	25105804	Ji Z.Y., Xiong L., Zou L.F., Li Y.R., Ma W.X., Liu L., Zakria M., Ji G.H., Chen G.Y.	avrXa7-Xa7 mediated defense in rice can be suppressed by transcriptional activator-like effectors tal6 and TAL11a from Xanthomonas oryzae pv. oryzicola.	Mol. Plant Microbe Interact.	27(9)	983-95	2014		
41428	25200087	Zhou H., Liu B., Weeks D.P., Spalding M.H., Yang B.	Large chromosomal deletions and heritable small genetic changes induced by CRISPR/Cas9 in rice.	Nucleic Acids Res.	42(17)	10903-14	2015		
41429	25197968	Jiang S.Y., Vanitha J., Bai Y., Ramachandran S.	A novel binary T-vector with the GFP reporter gene for promoter characterization.	PLoS ONE	9(9)	e107328	2014		
41430	25375147	Han Y., Meng J., Chen J., Cai W., Wang Y., Zhao J., He Y., Feng Y., Hua H.	Bt Rice Expressing Cry2Aa Does Not Harm Cyrtorhinus lividipennis, a Main Predator of the Nontarget Herbivore Nilapavarta lugens.	PLoS ONE	9(11)	e112315	2014		
41431	25386911	Shen C., Yue R., Yang Y., Zhang L., Sun T., Tie S., Wang H.	OsARF16 Is Involved in Cytokinin-Mediated Inhibition of Phosphate Transport and Phosphate Signaling in Rice (Oryza sativa L.).	PLoS ONE	9(11)	e112906	2014		
41432	25399831	Zhang X., Dong W., Sun J., Feng F., Deng Y., He Z., Oldroyd G.E., Wang E.	The receptor kinase CERK1 has dual functions in symbiosis and immunity signalling.	Plant J.			2014		
41433	25385701	Wang C., Zhang X., Fan Y., Gao Y., Zhu Q., Zheng C., Qin T., Li Y., Che J., Zhang M., Yang B., Liu Y., Zhao K.	Xa23 is an executor R protein and confers broad-spectrum disease resistance in rice.	Mol Plant			2014	XA23	Xa23(t)*, Xa23(t), Xa23, Xa23-Ni 
41434	25367203	Song H., He X., Zou S., Zhang T., Luo Y., Huang K., Zhu Z., Xu W.	A 90-day subchronic feeding study of genetically modified rice expressing Cry1Ab protein in Sprague-Dawley rats.	Transgenic Res.			2014		
41435	25367283	Fekih R., Tamiru M., Kanzaki H., Abe A., Yoshida K., Kanzaki E., Saitoh H., Takagi H., Natsume S., Undan J.R., Undan J., Terauchi R.	The rice (Oryza sativa L.) lesion mimic RESEMBLING, which encodes an AAA-type ATPase, is implicated in defense response.	Mol. Genet. Genomics			2014	LMR	OsLMR, LRD6-6, OsLRD6-6, SPL-A, OsSPL-A
41436	25393516	Araki R., Kousaka K., Namba K., Murata Y., Murata J.	2'-Deoxymugineic acid promotes growth of rice (Oryza sativa L.) by orchestrating iron and nitrate uptake processes under high pH conditions.	Plant J.			2014		
41437	25381289	Yano K., Ookawa T., Aya K., Ochiai Y., Hirasawa T., Ebitani T., Takarada T., Yano M., Yamamoto T., Fukuoka S., Wu J., Ando T., Ordonio R.L., Hirano K., Matsuoka M.	Isolation of a novel lodging resistance QTL gene involved in strigolactone signaling and its pyramiding with a QTL gene involved in another mechanism.	Mol Plant			2014		
41438	25399020	Wang Z., Wang Y., Hong X., Hu D., Liu C., Yang J., Li Y., Huang Y., Feng Y., Gong H., Li Y., Fang G., Tang H., Li Y.	Functional inactivation of UDP-N-acetylglucosamine pyrophosphorylase 1 (UAP1) induces early leaf senescence and defence responses in rice.	J. Exp. Bot.			2014	SPL29,UAP2	UAP1, OsUAP1, OsSPL29,OsUAP2
41439	25392068	Endo M., Mikami M., Toki S.	Multi-gene knockout utilizing off-target mutations of the CRISPR/Cas9 system in rice.	Plant Cell Physiol.			2014		
41440	25402171	Hsu Y.W., Wang H.J., Hsieh M.H., Hsieh H.L., Jauh G.Y.	Arabidopsis mTERF15 Is Required for Mitochondrial nad2 Intron 3 Splicing and Functional Complex I Activity.	PLoS ONE	9(11)	e112360	2014		
41441	25391545	Dong Q., Jiang H., Xu Q., Li X., Peng X., Yu H., Xiang Y., Cheng B.	Cloning and Characterization of a Multifunctional Promoter from Maize (Zea mays L.).	Appl. Biochem. Biotechnol.			2014		
41442	25534925	Hirabayashi H., Sasaki K., Kambe T., Gannaban R.B., Miras M.A., Mendioro M.S., Simon E.V., Lumanglas P.D., Fujita D., Takemoto-Kuno Y., Takeuchi Y., Kaji R., Kondo M., Kobayashi N., Ogawa T., Ando I., Jagadish K.S., Ishimaru T.	qEMF3, a novel QTL for the early-morning flowering trait from wild rice, Oryza officinalis, to mitigate heat stress damage at flowering in rice, O. sativa.	J. Exp. Bot.			2014		
41443	25492220	Lin J., Cheng Z., Xu M., Huang Z., Yang Z., Huang X., Zheng J., Lin T.	Genome re-sequencing and bioinformatics analysis of a nutraceutical rice.	Mol. Genet. Genomics			2014		
41444	25522878	Ding Z., Lin Z., Li Q., Wu H., Xiang C., Wang J.	DNL1, encodes cellulose synthase-like D4, is a major QTL for plant height and leaf width in rice (Oryza sativa L.).	Biochem. Biophys. Res. Commun.			2014		
41445	25473841	Guo M., Wang R., Wang J., Hua K., Wang Y., Liu X., Yao S.	ALT1, a Snf2 Family Chromatin Remodeling ATPase, Negatively Regulates Alkaline Tolerance through Enhanced Defense against Oxidative Stress in Rice.	PLoS ONE	9(12)	e112515	2014	ALT1	OsDLN22, DLN22, CHR706, OsCHR706, OsALT1,  OsRING431, RING431
41446	25517485	Zhang Y.C., Liao J.Y., Li Z.Y., Yu Y., Zhang J.P., Li Q.F., Qu L.H., Shu W.S., Chen Y.Q.	Genome-wide screening and functional analysis identify a large number of long noncoding RNAs involved in the sexual reproduction of rice.	Genome Biol.	15(12)	512	2014		
41447	25482754	Siddique A.B., Ara I., Islam S.M., Tuteja N.	Effect of air desiccation and salt stress factors on in vitro regeneration of rice (Oryza sativa L.).	Plant Signal Behav	9(12)	e977209	2014		
41448	25432789	Dong W., Cheng Z.J., Lei C.L., Wang X.L., Wang J.L., Wang J., Wu F.Q., Zhang X., Guo X.P., Zhai H.Q., Wan J.M.	Overexpression of Folate Biosynthesis Genes in Rice (Oryza sativa L.) and Evaluation of Their Impact on Seed Folate Content.	Plant Foods Hum Nutr	69(4)	379-85	2014		
41449	25270163	Wang Z., Cao H., Chen F., Liu Y.	The roles of histone acetylation in seed performance and plant development.	Plant Physiol. Biochem.	84C	125-133	2014		
41450	25243048	Mimura M., Itoh J.	Genetic interaction between rice PLASTOCHRON genes and the gibberellin pathway in leaf development.	Rice (N Y)	7(1)	25	2014		
41451	25231250	Qian B., Li X., Liu X., Wang M.	Improved oxidative tolerance in suspension-cultured cells of C4 -pepctransgenic rice by H2 O2 and Ca(2+) under PEG-6000.	J Integr Plant Biol			2014		
41452	25059749	Agarrwal R., Bentur J.S., Nair S.	Gas chromatography mass spectrometry based metabolic profiling reveals biomarkers involved in rice-gall midge interactions.	J Integr Plant Biol	56(9)	837-48	2014		
41453	25342550	Zulfugarov I.S., Tovuu A., Eu Y.J., Dogsom B., Poudyal R., Nath K., Hall M., Banerjee M., Yoon U., Moon Y.H., An G., Jansson S., Lee C.H.	Production of superoxide from Photosystem II in a rice ( Oryza sativa L.) mutant lacking PsbS.	BMC Plant Biol.	14(1)	242	2014		
41454	25281725	Singh S., Mackill D.J., Ismail A.M.	Physiological bases of tolerance to complete submergence in rice involves other genetic factors in addition to Sub1.	AoB Plants			2014		
41455	25358745	Ambavaram M.M., Basu S., Krishnan A., Ramegowda V., Batlang U., Rahman L., Baisakh N., Pereira A.	Coordinated regulation of photosynthesis in rice increases yield and tolerance to environmental stress.	Nat Commun	5	5302	2014		
41456	25330210	Matus J.T., Aquea F., Espinoza C., Vega A., Cavallini E., Santo S.D., Ca??n P., de la Guardia AR., Serrano J., Tornielli G.B., Arce-Johnson P.	Inspection of the Grapevine BURP Superfamily Highlights an Expansion of RD22 Genes with Distinctive Expression Features in Berry Development and ABA-Mediated Stress Responses.	PLoS ONE	9(10)	e110372	2014		
41457	25435546	Kurotani A., Yamada Y., Shinozaki K., Kuroda Y., Sakurai T.	Plant-PrAS: A Database of Physicochemical and Structural Properties and Novel Functional Regions in Plant Proteomes.	Plant Cell Physiol.			2014		
41458	25417716	Raghuram B., Sheikh A.H., Rustagi Y., Sinha A.K.	MicroRNA biogenesis factor DRB1 is a phosphorylation target of mitogen activated protein kinase MPK3 in both rice and Arabidopsis.	FEBS J.			2014	DRB1-3,DRB1-4,DRB5,DRB3,HYL1,RL89,DRB6,DRB1-1	OsRBP, OsDRB1b, DRB1b, OsDRB1-3,OsDRB1-4,OsDRB3, DRB3, OsDRB5,OsDRB3,OsDRB1a, DRB1a, OsHYL1, OsDRB1-2, DRB1-2,OsDRB2, DRB2, OsRL89, SRL10, OsSRL10,OsDRB4, DRB4, OsDRB6,OsDRB1c, DRB1c, DRB1C, OsDRB1-1
41459	25506347	Cesari S., Bernoux M., Moncuquet P., Kroj T., Dodds P.N.	A novel conserved mechanism for plant NLR protein pairs: the "integrated decoy" hypothesis.	Front Plant Sci	5	606	2014		
41460	25531538	Saha J., Sengupta A., Gupta K., Gupta B.	Molecular phylogenetic study and expression analysis of ATP-binding cassette transporter gene family in Oryza sativa in response to salt stress.	Comput Biol Chem	54C	18-32	2014		
41461	25435547	Murcha M.W., Narsai R., Devenish J., Kubiszewski-Jakubiak S., Whelan J.	MPIC: A Mitochondrial Protein Import Components Database for Plant and Non-Plant Species.	Plant Cell Physiol.			2014		
41462	25416794	Wagatsuma T., Khan M.S., Watanabe T., Maejima E., Sekimoto H., Yokota T., Nakano T., Toyomasu T., Tawaraya K., Koyama H., Uemura M., Ishikawa S., Ikka T., Ishikawa A., Kawamura T., Murakami S., Ueki N., Umetsu A., Kannari T.	Higher sterol content regulated by CYP51 with concomitant lower phospholipid contents in membranes is a common strategy for aluminium tolerance in several plant species.	J. Exp. Bot.			2014		
41463	25429427	Zhao J., Yang Y., Kang Z.	Proteomic analysis of rice nonhost resistance to Puccinia striiformis f. sp. tritici using two-dimensional electrophoresis.	Int J Mol Sci	15(12)	21644-59	2014		
41464	25420550	Yang Z., Zhou Y., Huang J., Hu Y., Zhang E., Xie Z., Ma S., Gao Y., Song S., Xu C., Liang G.	Ancient horizontal transfer of transaldolase-like protein gene and its role in plant vascular development.	New Phytol.			2014		
41465	25501185	Huan J., Bao Y.M., Wu Y.Y., Zeng G.Y., He W.W., Dang L.L., Wang J.F., Zhang H.S.	Identification of quantitative trait loci conferring blast resistance in Bodao, a japonica rice landrace.	Genet. Mol. Res.	13(4)	9756-65	2014		
41466	25431424	Kwon C.T., Koo B.H., Kim D., Yoo S.C., Paek N.C.	Casein Kinases I and 2alpha Phosphorylate Oryza Sativa Pseudo-Response Regulator 37 (OsPRR37) in Photoperiodic Flowering in Rice.	Mol. Cells			2014	HD16,HD2,HD6,GHD7	Hd16, EL1, CK1, Hd16/CKI, Hd16/EL1,Hd2(t), Hd2, qHD2(t), OsPRR37, Os-PRR37, PRR37, Prr4, OsPRR4, DTH7, Os DTH7, OsCCT28, CCT28, Ghd7.1, PRR37/Hd2, EH7-2, EH7-2/Hd2, Hd2/PRR37, PRR37-1a, PRR37-1b, PRR37-1c, PRR37-2a, PRR37- 2, HD7.2,Hd6(t)*, OSCKA2, OsCKA2, CKA2, OsCKA2-1, CKA2-1, Hd6/CK2alpha, CK2alpha,Ghd2, Ghd7, OsGhd7, OsCCT26, OsCMF8, OsI, Ghd7/Hd4, Hd4, EH7-1/Hd4, Ghd7-0a, EH7-1, EH7/Ghd7, EH7, OsEH7, GLW7.1, OsGLW7.1
41467	25501189	Bevitori R., Oliveira M.B., Grossi-de-S? MF., Lanna A.C., da Silveira RD., Petrofeza S.	Selection of optimized candidate reference genes for qRT-PCR normalization in rice (Oryza sativa L.) during Magnaporthe oryzae infection and drought.	Genet. Mol. Res.	13(4)	9795-805	2014		
41468	25413289	Srivastava R.K., Pandey P., Rajpoot R., Rani A., Gautam A., Dubey R.S.	Exogenous application of calcium and silica alleviates cadmium toxicity by suppressing oxidative damage in rice seedlings.	Protoplasma			2014		
41469	25418692	Du H., Chang Y., Huang F., Xiong L.	gid1 modulates stomatal response and submergence tolerance involving ABA and GA signaling in rice.	J Integr Plant Biol			2014	NCED1,_,NCED2,PSY3,CKX4,_,BHLH53,GID1,NCED3,SDD1	OSNCED1, OsNCED-1, OsNCED3, OsNced3, NCED3, OsNCED9, NCED9,OsTMM, TMM,OSNCED2, OsNCED2, OsNCED5, NCED5,OsPSY, PSY, OsPSY3,OsCKX4, ckx4, OsSCRM, OsSCRM2, SCRM, SCRM2,YDA2, OsYDA2,OsbHLH053, bHLH053, bHLH53, OsSPCH2, SPCH2,gid1, OsGID1, Thl, Os GID1,OSNCED3, OsNCED-3, OsNCED3, OsNCED3a, NCED3a, OsNCED4, NCED4, OsNECD2, OsNCED2b, NCED2b ,OsSDD1, OsSub26, SUB26
41470	25319482	Fan J., Guo X.Y., Li L., Huang F., Sun W.X., Li Y., Huang Y.Y., Xu Y.J., Shi J., Lei Y., Zheng A.P., Wang W.M.	Infection of Ustilaginoidea virens intercepts rice seed formation but activates grain-filling-related genes.	J Integr Plant Biol			2014		
41471	25330236	Ma B., Yin C.C., He S.J., Lu X., Zhang W.K., Lu T.G., Chen S.Y., Zhang J.S.	Ethylene-Induced Inhibition of Root Growth Requires Abscisic Acid Function in Rice (Oryza sativa L.) Seedlings.	PLoS Genet.	10(10)	e1004701	2014	ERS1,ABA4,EIN2	OS-ERS1, OsERS1, OsERS1a, OsERS1b, OSERS,OsMHZ4, MHZ4, MHZ4/OsABA4, OsABA4,OsEIN2, MHZ7/OsEIN2, OsEIN2/MHZ7, MHZ7 
41472	25280352	Lin D., Jiang Q., Zheng K., Chen S., Zhou H., Gong X., Xu J., Teng S., Dong Y.	Mutation of the rice ASL2 gene encoding plastid ribosomal protein L21 causes chloroplast developmental defects and seedling death.	Plant Biol (Stuttg)			2014		
41473	25307286	Liu Z., Cheng Q., Sun Y., Dai H., Song G., Guo Z., Qu X., Jiang D., Liu C., Wang W., Yang D.	A SNP in OsMCA1 responding for a plant architecture defect by deactivation of bioactive GA in rice.	Plant Mol. Biol.			2014		
41474	25324853	Vasudevan K., Vera Cruz CM., Gruissem W., Bhullar N.K.	Large scale germplasm screening for identification of novel rice blast resistance sources.	Front Plant Sci	5	505	2014		
41475	25273267	Tang M., Mao D., Xu L., Li D., Song S., Chen C.	Integrated analysis of miRNA and mRNA expression profiles in response to Cd exposure in rice seedlings.	BMC Genomics	15	835	2014		
41476	25344813	Zhang Y., van Dijk AD., Scaffidi A., Flematti G.R., Hofmann M., Charnikhova T., Verstappen F., Hepworth J., van der Krol S., Leyser O., Smith S.M., Zwanenburg B., Al-Babili S., Ruyter-Spira C., Bouwmeester H.J.	Rice cytochrome P450 MAX1 homologs catalyze distinct steps in strigolactone biosynthesis.	Nat. Chem. Biol.			2014	SLB2,SLB1	CYP711A1, OsCYP711A1, Os1400/CYP711A3, Os1400, CYP711A3, OsCYP711A3, OsMAX1-1400, MAX1-1400,OsSLB1, Os900/CYP711A2, Os900, CYP711A2, OsCYP711A2, OsCO, CO
41477	25366771	Ma Y., Guo J.W., Bade R., Men Z.H., Hasi A.	Genome-wide identification and phylogenetic analysis of the SBP-box gene family in melons.	Genet. Mol. Res.	13(4)	8794-806	2014		
41478	25336565	Liu W., Frick M., Huel R., Nykiforuk C.L., Wang X., Gaudet D.A., Eudes F., Conner R.L., Kuzyk A., Chen Q., Kang Z., Laroche A.	Stripe Rust Resistance Gene Yr10 Encodes an Evolutionary-conserved and Unique CC-NBS-LRR Sequence in Wheat.	Mol Plant			2014		
41479	25336682	Sandhu N., Torres R.O., Cruz M.T., Maturan P.C., Jain R., Kumar A., Henry A.	Traits and QTLs for development of dry direct-seeded rainfed rice varieties.	J. Exp. Bot.			2014		
41480	25311959	Wang M., Hua X., Zhang Q., Yang Y., Shi H., Wang M.	Enantioselective Degradation of Metalaxyl in Grape, Tomato, and Rice Plants.	Chirality			2014		
41481	25428432	Jiang S.Y., Vanitha J., Bai Y., Ramachandran S.	Identification and molecular characterization of tissue-preferred rice genes and their upstream regularly sequences on a genome-wide level.	BMC Plant Biol.	14(1)	331	2014		
41482	25472708	Atwell B.J., Greenway H., Colmer T.D.	Efficient use of energy in anoxia-tolerant plants with focus on germinating rice seedlings.	New Phytol.			2014		
41483	25545811	Xu H., Wei Y., Zhu Y., Lian L., Xie H., Cai Q., Chen Q., Lin Z., Wang Z., Xie H., Zhang J.	Antisense suppression of LOX3 gene expression in rice endosperm enhances seed longevity.	Plant Biotechnol. J.			2014		
41484	25479006	Xu X., Bai H., Liu C., Chen E., Chen Q., Zhuang J., Shen B.	Genome-Wide Analysis of MicroRNAs and Their Target Genes Related to leaf senescence of Rice.	PLoS ONE	9(12)	e114313	2014		
41485	25488398	Wang R., Lu L., Pan X., Hu Z., Ling F., Yan Y., Liu Y., Lin Y.	Functional analysis of OsPGIP1 in rice sheath blight resistance.	Plant Mol. Biol.	87(1-2)	181-91	2015		
41486	25553855	Miah G., Rafii M.Y., Ismail M.R., Puteh A.B., Rahim H.A., Latif M.A.	Recurrent parent genome recovery analysis in a marker-assisted backcrossing program of rice (Oryza sativa L.).	C. R. Biol.			2014		
41487	25576000	Shen C., Yue R., Sun T., Zhang L., Yang Y., Wang H.	OsARF16, a transcription factor regulating auxin redistribution, is required for iron deficiency response in rice (Oryza sativa L.).	Plant Sci.	231	148-58	2015		
41488	25540933	Li Y., Ye Z., Nie Y., Zhang J., Wang G.L., Wang Z.	Comparative phosphoproteome analysis of Magnaporthe oryzae-responsive proteins in susceptible and resistant rice cultivars.	J Proteomics	115C	66-80	2014		
41489	25443837	Ma H., Feng L., Chen Z., Chen X., Zhao H., Xiang Y.	Genome-wide identification and expression analysis of the IQD gene family in Populus trichocarpa.	Plant Sci.	229	96-110	2014		
41490	25504197	Ranjan A., Vadassery J., Patel H.K., Pandey A., Palaparthi R., Mith?fer A., Sonti R.V.	Upregulation of jasmonate biosynthesis and jasmonate-responsive genes in rice leaves in response to a bacterial pathogen mimic.	Funct. Integr. Genomics			2014		
41491	25532120	Mekawy A.M., Assaha D.V., Yahagi H., Tada Y., Ueda A., Saneoka H.	Growth, physiological adaptation, and gene expression analysis of two Egyptian rice cultivars under salt stress.	Plant Physiol. Biochem.	87C	17-25	2014		
41492	25442012	Coudert Y., Le V.A., Adam H., B?s M., Vignols F., Jouannic S., Guiderdoni E., Gantet P.	Identification of CROWN ROOTLESS1-regulated genes in rice reveals specific and conserved elements of postembryonic root formation.	New Phytol.			2014		
41493	25528301	Zhang Z., Mao X., Ou J., Ye N., Zhang J., Peng X.	Distinct photorespiratory reactions are preferentially catalyzed by glutamate:glyoxylate and serine:glyoxylate aminotransferases in rice.	J. Photochem. Photobiol. B, Biol.	142C	110-117	2014		
41494	25439309	Zhang Y., Tan L., Zhu Z., Yuan L., Xie D., Sun C.	TOND1 confers tolerance to nitrogen deficiency in rice.	Plant J.			2014	TOND1,GLT1,GS2,GLT2	OsTOND1, OsPR5a, PR5a,OsGLT1, OsNADH-GOGAT1, NADH-GOGAT1, OsNADH-GOGAT, GOGAT, NADH-GOGAT, OsGOGAT1, GOGAT1, OsGLU1,OsGS2, GLN2, OsGLN2, RGS31, OsRGS31,OsGLT2, OsNADH-GOGAT2, NADH-GOGAT2, OsGOGAT2, GOGAT2, OsGLU2, GLU2
41495	25520407	Shi X., Sun X., Zhang Z., Feng D., Zhang Q., Han L., Wu J., Lu T.	GLUCAN SYNTHASE-LIKE 5 (GSL5) plays an essential role in male fertility by regulating callose metabolism during microsporogenesis in rice.	Plant Cell Physiol.			2014		
41496	25270162	Kang S.M., Radhakrishnan R., Khan A.L., Kim M.J., Park J.M., Kim B.R., Shin D.H., Lee I.J.	Gibberellin secreting rhizobacterium, Pseudomonas putida H-2-3 modulates the hormonal and stress physiology of soybean to improve the plant growth under saline and drought conditions.	Plant Physiol. Biochem.	84C	115-124	2014		
41497	25224158	Chen H., Li G., K?llner TG., Jia Q., Gershenzon J., Chen F.	Positive Darwinian selection is a driving force for the diversification of terpenoid biosynthesis in the genus Oryza.	BMC Plant Biol.	14(1)	239	2014		
41498	25187853	Yu C., Chen H., Tian F., Leach J.E., He C.	Differentially-expressed genes in rice infected by Xanthomonas oryzae pv. oryzae relative to a flagellin-deficient mutant reveal potential functions of flagellin in host-pathogen interactions.	Rice (N Y)	7(1)	20	2014		
41499	25201296	Murai M., Hata T., Kosumi T., Seike H.	Effects of a rice major gene Ur1 (Undulate rachis -1) on panicle and grain traits.	Hereditas	151(4-5)	61-72	2014		
41500	24983886	Shimane M., Ueno Y., Morisaki K., Oogami S., Natsume M., Hayashi K., Nozaki H., Kawaide H.	Molecular evolution of the substrate specificity of ent-kaurene synthases to adapt to gibberellin biosynthesis in land plants.	Biochem. J.	462(3)	539-46	2014		
41501	25200982	Chen Y.S., Lo S.F., Sun P.K., Lu C.A., Ho T.H., Yu S.M.	A late embryogenesis abundant protein HVA1 regulated by an inducible promoter enhances root growth and abiotic stress tolerance in rice without yield penalty.	Plant Biotechnol. J.			2014		
41502	25184027	Tu Y., Jiang A., Gan L., Hossain M., Zhang J., Peng B., Xiong Y., Song Z., Cai D., Xu W., Zhang J., He Y.	Genome duplication improves rice root resistance to salt stress.	Rice (N Y)	7(1)	15	2014		
41503	25223543	Chen J.Y., Guo L., Ma H., Chen Y.Y., Zhang H.W., Ying J.Z., Zhuang J.Y.	Fine mapping of qHd1, a minor heading date QTL with pleiotropism for yield traits in rice (Oryza sativa L.).	Theor. Appl. Genet.	127(11)	2515-24	2014		
41504	25327517	Hara T., Katoh H., Ogawa D., Kagaya Y., Sato Y., Kitano H., Nagato Y., Ishikawa R., Ono A., Kinoshita T., Takeda S., Hattori T.	Rice SNF2 family helicase ENL1 is essential for syncytial endosperm development.	Plant J.			2014	ENL1L,ENL1	OsENL1L, CHR712, OsCHR712,enl1
41505	25341369	Onogi A., Ideta O., Inoshita Y., Ebana K., Yoshioka T., Yamasaki M., Iwata H.	Exploring the areas of applicability of whole-genome prediction methods for Asian rice (Oryza sativa L.).	Theor. Appl. Genet.			2014		
41506	25326264	Qin D., Wang F., Geng X., Zhang L., Yao Y., Ni Z., Peng H., Sun Q.	Overexpression of heat stress-responsive TaMBF1c, a wheat (Triticum aestivum L.) Multiprotein Bridging Factor, confers heat tolerance in both yeast and rice.	Plant Mol. Biol.			2014		
41507	25351627	Wang X., Jiang D., Yang D.	Fast-Tracking Determination of Homozygous Transgenic Lines and Transgene Stacking Using a Reliable Quantitative Real-Time PCR Assay.	Appl. Biochem. Biotechnol.			2014		
41508	25250906	Lee H.Y., Byeon Y., Lee K., Lee H.J., Back K.	Cloning of Arabidopsis Serotonin N-acetyltransferase and its role with caffeic acid O-methyltransferase in the biosynthesis of melatonin in vitro despite their different subcellular localizations.	J. Pineal Res.	57(4)	418-26	2014		
41509	25298209	Ookawa T., Inoue K., Matsuoka M., Ebitani T., Takarada T., Yamamoto T., Ueda T., Yokoyama T., Sugiyama C., Nakaba S., Funada R., Kato H., Kanekatsu M., Toyota K., Motobayashi T., Vazirzanjani M., Tojo S., Hirasawa T.	Increased lodging resistance in long-culm, low-lignin gh2 rice for improved feed and bioenergy production.	Sci Rep	4	6567	2014		
41510	25297540	Sineshchekov V., Sudnitsin A., Ad?m E., Sch?fer E., Viczi?n A.	phyA-GFP is spectroscopically and photochemically similar to phyA and comprises both its native types, phyA' and phyA''	Photochem. Photobiol. Sci.			2014		
41511	25333312	Zhao Q., Liu M., Tan M., Gao J., Shen Z.	Expression of Cry1Ab and Cry2Ab by a Polycistronic Transgene with a Self-Cleavage Peptide in Rice.	PLoS ONE	9(10)	e110006	2014		
41512	25344844	Bagautdinov B., Matsuura Y., Yamamoto H., Sawano M., Ogasahara K., Takehira M., Kunishima N., Katoh E., Yutani K.	Thermodynamic analysis of unusually thermostable CutA1 protein from human brain and its protease susceptibility.	J. Biochem.			2014		
41513	25344821	Malviya N., Gupta S., Singh V.K., Yadav M.K., Bisht N.C., Sarangi B.K., Yadav D.	Genome wide in silico characterization of Dof gene families of pigeonpea (Cajanus cajan (L) Millsp.).	Mol. Biol. Rep.			2014		
41514	25368624	Saika H., Nishizawa-Yokoi A., Toki S.	The non-homologous end-joining pathway is involved in stable transformation in rice.	Front Plant Sci	5	560	2014		
41515	25505034	Ohyanagi H., Takano T., Terashima S., Kobayashi M., Kanno M., Morimoto K., Kanegae H., Sasaki Y., Saito M., Asano S., Ozaki S., Kudo T., Yokoyama K., Aya K., Suwabe K., Suzuki G., Aoki K., Kubo Y., Watanabe M., Matsuoka M., Yano K.	Plant Omics Data Center: An Integrated Web Repository for Interspecies Gene Expression Networks with NLP-Based Curation.	Plant Cell Physiol.			2014		
41516	25537885	Chhapekar S., Raghavendrarao S., Pavan G., Ramakrishna C., Singh V.K., Phanindra M.L., Dhandapani G., Sreevathsa R., Ananda Kumar P.	Transgenic rice expressing a codon-modified synthetic CP4-EPSPS confers tolerance to broad-spectrum herbicide, glyphosate.	Plant Cell Rep.			2014		
41517	25512054	Pan Y., Li Q., Wang Z., Wang Y., Ma R., Zhu L., He G., Chen R.	Genes associated with thermosensitive genic male sterility in rice identified by comparative expression profiling.	BMC Genomics	15	1114	2014		
41518	25480961	Gu X.Y., Zhang J., Ye H., Zhang L., Feng J.	Genotyping of Endosperms To Determine seed dormancy Genes Regulating Germination Through Embryonic, Endospermic or Maternal Tissues in Rice.	G3 (Bethesda)			2014		
41519	25438645	Fang C., Li Y., Li C., Li B., Ren Y., Zheng H., Zeng X., Shen L., Lin W.	Identification and comparative analysis of microRNAs in barnyardgrass (Echinochloa crus-galli) in response to rice allelopathy.	Plant Cell Environ.			2014		
41520	25487270	Zhao D., Qiao Z., Cheng X., Wang J., Jiao C., Sun B.	Molecular identification of one event of Ds excision and re-insertion at two loci in rice genome.	Yi Chuan	36(12)	1249-55	2014		
41521	25572229	Jin S., Sun D., Wang J., Li Y., Wang X., Liu S.	Expression of the rgMT gene, encoding for a rice metallothionein-like protein in Saccharomyces cerevisiae and Arabidopsis thaliana.	J. Genet.	93(3)	709-18	2014		
41522	25524588	Wu N., Zhu Y., Song W., LI Y., Yan Y., Hu Y.	Unusual tandem expansion and positive selection in subgroups of the plant GRAS transcription factor superfamily.	BMC Plant Biol.	14(1)	373	2014		
41523	25532750	Fukuda A., Sugimoto K., Ando T., Yamamoto T., Yano M.	Chromosomal locations of a gene underlying heat-accelerated brown spot formation and its suppressor genes in rice.	Mol. Genet. Genomics			2014		
41524	25252199	Pengthaisong S., Ketudat Cairns JR.	Effects of active site cleft residues on oligosaccharide binding, hydrolysis, and glycosynthase activities of rice BGlu1 and its mutants.	Protein Sci.			2014		
41525	25227951	Urano D., Colaneri A., Jones A.M.	Galpha modulates salt-induced cellular senescence and cell division in rice and maize.	J. Exp. Bot.			2014		
41526	25208036	Park S., Byeon Y., Lee H.Y., Kim Y.S., Ahn T., Back K.	Cloning and characterization of a serotonin N-acetyltransferase from a gymnosperm, loblolly pine (Pinus taeda).	J. Pineal Res.	57(3)	348-55	2014		
41527	25231087	Song B.K., Chuah T.S., Tam S.M., Olsen K.M.	Malaysian weedy rice shows its true stripes: wild Oryza and elite rice cultivars shape agricultural weed evolution in Southeast Asia.	Mol. Ecol.	23(20)	5003-17	2014		
41528	25306526	Zulfugarov I.S., Tovuu A., Lee C.H.	Acceleration of cyclic electron flow in rice plants (Oryza sativa L.) deficient in the PsbS protein of Photosystem II.	Plant Physiol. Biochem.	84C	233-239	2014		
41529	25528599	Zhu X.F., Wang Z.W., Wan J.X., Sun Y., Wu Y.R., Li G.X., Shen R.F., Zheng S.J.	Pectin enhances rice (Oryza sativa) root phosphorus remobilization.	J. Exp. Bot.			2014		
41530	25479236	Lei X., Xiao Y., Xia W., Mason A.S., Yang Y., Ma Z., Peng M.	RNA-Seq Analysis of Oil Palm under Cold Stress Reveals a Different C-Repeat Binding Factor (CBF) Mediated Gene Expression Pattern in Elaeis guineensis Compared to Other Species.	PLoS ONE	9(12)	e114482	2014		
41531	25501945	Betterle N., Ballottari M., Baginsky S., Bassi R.	High light-dependent phosphorylation of Photosystem II inner antenna CP29 in monocots is STN7-independent and enhances Non Photochemical Quenching.	Plant Physiol.			2014	STN7,CP29,PP2C5	OsSTN7,OsCP29, LHCB4, Lhcb4, OsLHCB4,OsPP2C05, PP2C05, OsPP2C5, OsPP9, PPH1, TAP38, PPH1/TAP38
41532	25232936	Shan Q., Wang Y., Li J., Gao C.	Genome editing in rice and wheat using the CRISPR/Cas system.	Nat Protoc	9(10)	2395-410	2014		
41533	25223260	Yi J., An S., An G.	OsMLO12, encoding seven transmembrane proteins, is involved with pollen hydration in rice.	Plant Reproduction			2014		
41534	25148576	Liu J.F., Ding J., Yuan B.F., Feng Y.Q.	Magnetic solid phase extraction coupled with in situ derivatization for the highly sensitive determination of acidic phytohormones in rice leaves by UPLC-MS/MS.	Analyst	139(21)	5605-13	2014		
41535	25320554	Htun T.M., Inoue C., Chhourn O., Ishii T., Ishikawa R.	Effect of quantitative trait loci for seed shattering on abscission layer formation in Asian wild rice Oryza rufipogon.	Breed. Sci.	64(3)	199-205	2014		
41536	25326616	Thurber C.S., Reagon M., Olsen K.M., Jia Y., Caicedo A.L.	The evolution of flowering strategies in US weedy rice.	Am. J. Bot.	101(10)	1737-47	2014	SE1,HD3A	Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, OsHd1,  Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a 
41537	25365207	Zhang J., Huang W., Zhou Q.	Reflectance Variation within the In-Chlorophyll Centre Waveband for Robust Retrieval of Leaf Chlorophyll Content.	PLoS ONE	9(11)	e110812	2014		
41538	25528448	Frei M.	Breeding of ozone resistant rice: Relevance, approaches and challenges.	Environ. Pollut.	197C	144-155	2014		
41539	25474210	Wang H., Devos K.M., Bennetzen J.L.	Recurrent Loss of Specific Introns during Angiosperm Evolution.	PLoS Genet.	10(12)	e1004843	2014		
41540	25301195	Yesmin N., Elias S.M., Rahman M.S., Haque T., Mahbub Hasan AK., Seraj Z.I.	Unique Genotypic Differences Discovered among Indigenous Bangladeshi Rice Landraces.	International Journal of Genomics	2014	210328	2014		
41541	25270231	Kato Y., Collard B.C., Septiningsih E.M., Ismail A.M.	Physiological analyses of traits associated with tolerance of long-term partial submergence in rice.	AoB Plants	6		2014		
41542	25202124	Vergara G.V., Nugraha Y., Esguerra M.Q., Mackill D.J., Ismail A.M.	Variation in tolerance of rice to long-term stagnant flooding that submerges most of the shoot will aid in breeding tolerant cultivars.	AoB Plants	6		2014		
41543	25239066	Guo H.M., Li H.C., Zhou S.R., Xue H.W., Miao X.X.	Cis-12-Oxo-Phytodienoic Acid Stimulates Rice Defense Response to a Piercing-Sucking Insect.	Mol Plant			2014		
41544	25286109	Xia H., Zheng X., Chen L., Gao H., Yang H., Long P., Rong J., Lu B., Li J., Luo L.	Genetic Differentiation Revealed by Selective Loci of Drought-Responding EST-SSRs between Upland and Lowland Rice in China.	PLoS ONE	9(10)	e106352	2014		
41545	25295980	Yang W., Guo Z., Huang C., Duan L., Chen G., Jiang N., Fang W., Feng H., Xie W., Lian X., Wang G., Luo Q., Zhang Q., Liu Q., Xiong L.	Combining high-throughput phenotyping and genome-wide association studies to reveal natural genetic variation in rice.	Nat Commun	5	5087	2014		
41546	25360796	Zhang P., Liu X., Tong H., Lu Y., Li J.	Association Mapping for Important Agronomic Traits in Core Collection of Rice (Oryza sativa L.) with SSR Markers.	PLoS ONE	9(10)	e111508	2014		
41547	25326901	Yoeun S., Kim J.I., Han O.	Cellular localization and detergent dependent oligomerization of rice allene oxide synthase-1.	J. Plant Res.			2014		
41548	25378689	Endo M., Kumagai M., Motoyama R., Sasaki-Yamagata H., Mori-Hosokawa S., Hamada M., Kanamori H., Nagamura Y., Katayose Y., Itoh T., Toki S.	Whole genome analysis of herbicide-tolerant mutant rice generated by Agrobacterium-mediated gene targeting.	Plant Cell Physiol.			2014		
41549	25432597	Cabral A.L., Jordan M.C., McCartney C.A., You F.M., Humphreys D., MacLachlan R., Pozniak C.J.	Identification of candidate genes, regions and markers for pre-harvest sprouting resistance in wheat (Triticum aestivum L.).	BMC Plant Biol.	14(1)	340	2014		
41550	25429024	Matsubara K., Yamamoto E., Mizobuchi R., Yonemaru J., Yamamoto T., Kato H., Yano M.	Hybrid Breakdown Caused by Epistasis-Based Recessive Incompatibility in a Cross of Rice (Oryza sativa L.).	J. Hered.	106(1)	113-22			
41551	25434685	Songyikhangsuthor K., Guo Z., Wang N., Zhu X., Xie W., Mou T., Xiong L.	Natural variation in the sequence of SNAC1 and its expression level polymorphism in rice Germplasms under drought stress.	J Genet Genomics	41(11)	609-12	2014		
41552	25423588	Kong F., Li H., Sun P., Zhou Y., Mao Y.	De Novo Assembly and Characterization of the Transcriptome of Seagrass Zostera marina Using Illumina Paired-End Sequencing.	PLoS ONE	9(11)	e112245	2014		
41553	25505850	Jiang C., Cheng Z., Zhang C., Yu T., Zhong Q., Shen J.Q., Huang X.	Proteomic analysis of seed storage proteins in wild rice species of the Oryza genus.	Proteome Sci	12(1)	51	2014		
41554	25522807	Masumura T., Shigemitsu T., Morita S., Satoh S.	Identification of the region of rice 13?kDa prolamin essential for the formation of ER-derived protein bodies using a heterologous expression system.	Biosci. Biotechnol. Biochem.		1-8	2014		
41555	25265195	Zhao X., Wang W., Zhang F., Deng J., Li Z., Fu B.	Comparative metabolite profiling of two rice genotypes with contrasting salt stress tolerance at the seedling stage.	PLoS ONE	9(9)	e108020	2014		
41556	25335927	Amei A., Lee S., Mysore K.S., Jia Y.	Statistical Inference of Selection and Divergence of the Rice Blast Resistance Gene Pi-ta.	G3 (Bethesda)			2014		
41557	25547027	Choudhury B.I., Khan M.L., Dayanandan S.	Genetic relatedness among indigenous rice varieties in the Eastern Himalayan region based on nucleotide sequences of the Waxy gene.	BMC Res Notes	7(1)	953	2014		
41558	25536503	Liu L., Lai Y., Cheng J., Wang L., Du W., Wang Z., Zhang H.	Dynamic quantitative trait locus analysis of seed vigor at three maturity stages in rice.	PLoS ONE	9(12)	e115732	2014		
41559	20637108	Singh A., Giri J., Kapoor S., Akhilesh K Tyagi, Girdhar K Pandey	Protein phosphatase complement in rice: genome-wide identification and transcriptional analysis under abiotic stress conditions and reproductive development.	BMC Genomics	11	435	2010	PP2C67,SAL1,PP2C1,ABI2,PP2C65,_,PP2C30,_,PP2C63,_,PP2C70,PP2A-3,PP2C34,PP2C8,DCW11,PP2C33,PP2C31,PP2C27,PP2C78,GL3.1,PP2C2,PP41,_,PP2C50,PP2C74,_,_,PP2C1,_,PP2C42,_,_,PP2C20,PP130,PP2C38,_,_,PP47,PP2C71,_,PP2C23,PP2C36,PP2C32,_,_,PP2C40,_,PP2C25,_,_,_,PP83,_,_,PP2C39,PP2C62,_,_,_,PP2C21,_,_,PP23,_,_,PP2C15,PP2C19,PP2C45,PP2C52,PP2C18,PP2C44,STR19,_,OSKAPP,PP2C75,PP101,PP2C9,PP2C10,_,PP2C6,PP2C16,PP2C28,PP2C61,PP2C37,PP2C73,XB15,PP2C24,PP2C7,PP2C72,PP2A-1,_,PP2C26,PP2C64,PP2C66,PP2C58,PP2C11,PP2C56,PP2C22,_,PP2C46,PP2C4,_,PP2C47,PP2C14,PP2C53,_,PP2C57,SEX4,_,PP32,PP2C55,PP2C29,BIPP2C1,PP2C59,PP2C69,_,PP2C49,_,PP2C41,PP113,PP5,PP2C43,PP2C48,_,_,PP2C5,PP2C12,PP2C17,PP2C77,PP2C54,XA46,ABI1	OsPP2C67, OsPP107,OsPP2C60, PP2C60, OsPP92, PP92, OsSAL1,OsPP2C1, OsSIPP2C1, SIPP2C1, OsPP2C68, PP2C68, OsPP108,OsPP2C03, PP2C03, OsPP2C3, PP2C3, OsPP7, OsABI2,OsPP2C65, OsPP98,OsPHS1a, OsPP3,OsPP2C30, OsPP48, PP48,OsPFA-DSP1, OsPP105,OsPP2C63, OsPP96,OsPFA-DSP2, OsPP39,OsPP2C70, OsPP110,OsPP2A-3, PP2A3, OsPP20,OsPP2C34, OsPP55, OsBIPP2C2, OsBIPP2C2a, OsBIPP2C2b, OsBIPP2C2c,OsPP2C08, PP2C08, OsPP2C8, OsPP12,DCW11, OsPP2C13, PP2C13, OsPP22,OsPP2C33, OsPP51,OsPP2C31, OsPP49,OsPP2C27, OsPP40,OsPP2C78, OsPP131,OsPPKL1, PPKL1, qGL3, OsPP54, PP54, OsGL3.1, qGL3/OsPPKL1,OsPP2C02, PP2C02, OsPP2C2, OsPP2,OsPP41, OsTOPP3, TOPP3,OsPP58,OsPP2C50, OsPP78, OsABIL3, ABIL3,OsPP2C74, OsPP120, PP120,OsPP128,OsPP123,OsPP2C01, PP2C01, OsPP2C1, OsPP1, OsPBCP, PBCP ,OsPP57,OsPP2C42, OsPP67,OsPP13, PPP6 ,OsPP112, PP112, OsPP2Ac-4, PP2Ac-4 ,OsPP2C20, OsPP30,OsPP130, OsPTEN, PTEN,OsPP2C38, OsPP63,OsPP117,OsPP74,OsPP47, OsTOPP4, TOPP4,OsPP2C71, OsPP111,OsPP115,OsPP2C23, OsPP34,OsPP2C36, OsPP60,OsPP2C32, OsPP50,OsPP104,OsPP106,OsPP2C40, OsPP65, PP65,OsPP38,OsPP2C25, OsPP36, PP36,OsPPKL3, OsPP132,OsPP16,OsPP103,OsPP83, OsTOPP2, TOPP2,OsPP125,OsPP124,OsPP2C39, OsPP64,OsPP2C62, OsPP95, PP95,OsPP100,OsPP82,OsPP56, PP56, OsPP2Ac-2, PP2Ac-2,OsPP2C21, OsPP31,OsPP77,OsPP52,OsPP23, PKG, OsPKG,OsPP127, OsPTP1, PTP1,OsDsPTP1, OsPP6,OsPP2C15, OsPP25,OsPP2C19, OsPP29,OsPP2C45, OsPP70,OsPP2C52, OsPP80,OsPP2C18, OsPP28,OsPP2C44, OsPP69,OsStr19, OsPP126,OsPP17,OsKAPP, OsPP94, DLN179, OsDLN179,OsPP2C75, OsPP121,OsPP101, OsTOPP1, TOPP1,OsPP15, PP15, OsPP2C09, PP2C09, OsPP2C9, OsPP2C3,OsPP2C10, OsPP18,OsPP44, PP44,OsPP2C06/OsABI2, OsPP2C06, OsPP2C6, OsABI2, OsPP10, ABI2, OsABIL1, ABIL1,OsPP2C16, OsPP26,OsPP2C28, OsPP43,OsPP2C61, OsPP93,OsPP2C37, OsPP61,OsPP2C73, OsPP116,XB15, OsPP2C35, PP2C35, OsPP59, SIP35 ,OsPP2C24, OsPP35,OsPP2C07, PP2C07, OsPP2C7, OsPP11, PP11,OsPP2C72, OsPP114,OsPP2A-1, PP2A1, OsPP88,OsIBR5, IBR5, OsPP85,OsPP2C26, OsPP37,OsPP2C64, OsPP97,OsPP2C66, OsPP102,OsPP2C58, OsPP90,OsPP2C11, OsPP19,OsPP2C56, OsPP87,OsPP2C22, OsPP33,OsPP118,OsPP2C46, OsPP71,OsPP2C04, PP2C04, OsPP2C4, OsPP8,OsPHS1b, OsPP4, OsSTA14,OsPP2C47, OsPP72,OsPP2C14, OsPP24,OsPP2C53, OsPP81, OsABIL2, ABIL2,OsPPKL2, OsPP73,OsPP2C57, OsPP89,OsPP42, PP42, OsSEX4,OsPP14,OsPP32,OsPP2C55, OsPP86,OsPP2C29, OsPP46,OsBIPP2C1, OsPP45, PP45,OsPP2C59, OsPP91, PP91,OsPP2C69, OsPP109,OsPP119,OsPP2C49, OsPP76, PP76,OsFH12, FH12, OsPP62, OsSTA117, PP62, STA117,OsPP2C41, OsPP66,OsPP113,OsPP5, OsTOPP5, TOPP5,OsPP2C43, OsPP68,OsPP2C48, OsPP75,OsPP53,OsPP99,OsPP2C05, PP2C05, OsPP2C5, OsPP9, PPH1, TAP38, PPH1/TAP38,OsPP2C12, OsPP21,OsPP2C17, OsPP27,OsPP2C77, OsPP129, PP129,OsPP2C54, OsPP84,OsPP2C76, PP2C76, OsPP122, PP122, Xa46(t), Xa46, Doa, OsDoa,OsPP2C51, PP2C51, OsPP79, PP79, OsABI1
41560	19825577	Vij S., Giri J., Prasant Kumar Dansana, Kapoor S., Akhilesh K Tyagi	The receptor-like cytoplasmic kinase (OsRLCK) gene family in rice: organization, phylogenetic relationship, and expression during development and stress.	Mol Plant	1(5)	732-50	2008	RLCK185,RLCK118,RLCK199,RLCK370,RUPO,RLCK339,RLCK354,RLCK91,RLCK311,RLCK313,RLCK162,RLCK156,WAK71,RLCK86,WAK77,RLCK10,RLCK337,RLCK323,RLCK299,RLCK257,RLCK309,RLCK107,RLCK343,RLCK144,RLCK322,RLCK200,RLCK151,RLCK175,RLCK55,RLCK191,RLCK320,RLCK131,RLCK268,RLCK271,RLCK17,RLCK187,RLCK93,WAK81,RLCK197,RLCK177,RLCK308,RLCK98,RLCK295,RLCK319,RLCK169,RLCK171,RLCK174,RLCK244,WAK100,RLCK164,RLCK242,RLCK224,RLCK325,RLCK260,RLCK172,RLCK324,RLCK46,RLCK304,RLCK363,RLCK321,RLCK261,RLCK310,RLCK289,RLCK317,RLCK198,RLCK221,RLCK301,RLCK262,RLCK265,RLCK167,WAK82,8TAK2,RLCK302,RLCK136,RLCK146,RLCK158,RLCK296,RLCK355,RLCK189,WAK125,WAK116,WAK118,WAK126,WAK27,WAK44,WAK61,WAK119,WAK68,WAK69,WAK66,RLCK70,RLCK294,RLCK346,RLCK288,RLCK208,RLCK303,RLCK283,RLCK212,RLCK218,RLCK253,RLCK25,RLCK203,RLCK37,RLCK318,RLCK316,RLCK21,RLCK133,RLCK176,RLCK135,RLCK329,RLCK3,WAK47,WAK70,RLCK138,RLCK227,RLCK186,RLCK120,RLCK1,RLCK194,RLCK124,RLCK211,RLCK284,RLCK379,RLCK345,RLCK367,RLCK369,RLCK378,RLCK196,RLCK371,RLCK376,RLCK373,RLCK372,RLCK20,RLCK359,RLCK365,RLCK222,RLCK364,RLCK357,RLCK24,RLCK351,RLCK358,RLCK347,RLCK348,RLCK153,RLCK356,RLCK352,WAK4,RLCK350,FON1,RLCK130,RLCK285,RLCK314,RLCK312,RLCK251,WAK12,WAK72,WAK93,WAK102,WAK98,WAK36,RLCK9,RLCK14,RLCK22,RLCK30,RLCK38,RLCK45,RLCK48,RLCK52,RLCK54,RLCK63,RLCK65,RLCK71,RLCK80,RLCK84,RLCK92,RLCK94,RLCK95,RLCK97,RLCK108,RLCK123,RLCK125,RLCK129,RLCK132,RLCK137,RLCK139,RLCK141,RLCK148,RLCK150,RLCK155,RLCK157,RLCK170,RLCK68,RLCK111,RLCK305,RLCK43,RLCK15,RLCK220,RLCK223,RLCK226,RLCK236,RLCK238,RLCK243,RLCK247,RLCK256,RLCK258,Z15,RLCK154,RLCK2,WAK101,RLCK126,RLCK297,RLCK7,RLCK366,RLCK210,RLCK184,RLCK188,RLCK103,RLCK342,RLCK344,WAK129,WAK15,RLCK255,BSR1,RLCK340,RLCK183,RLCK105,RLCK266,RLCK180,RLCK326,RLCK209,RLCK206,RLCK233,RLCK349,RLCK300,RLCK50,RLCK327,RLCK85,RLCK204,WAK16,RLCK179,RLCK202,RLCK280,RLCK112,RLCK33,RLCK250,RLCK290,RLCK276,RLCK330,RLCK239,RLCK19,RLCK69,RLCK341,RLCK161,RLCK115,PWL1,RLCK116,RLCK117,RLCK113,RLCK281,RLCK106,RLCK102,RLCK104,RLCK298,RLCK78,RLCK11,RLCK36,RLCK263,RLCK79,RLCK216,RLCK232,RLCK182,RLCK96,RLCK100,RLCK99,RLCK90,RLCK88,RLCK89,RLCK82,RLCK192,RLCK128,RLCK16,RLCK74,RLCK336,RLCK145,WAK45,RLCK73,RLCK41,RLCK119,RLCK66,RLCK4,RLCK61,RLCK64,RLCK160,RLCK67,RLCK72,RLCK56,RLCK42,RLCK62,RLCK59,RLCK60,RLCK58,RLCK47,RLCK53,RLCK49,RLCK44,RLCK282,RLCK18,RLCK27,RLCK23,BBS1,RLCK237,RLCK168,RLCK166,RLCK28,RLCK35,RLCK39,RLCK122,RLCK57,RLCK5,RLCK31,RLCK34,RLCK217,RLCK29,RLCK207,RLCK163,RLCK26,RLCK173,RLCK40,RLCK306,RLCK240,RLCK87,RLCK8,RLCK6,RLCK259,RLCK275,RLCK83,RLCK241,RLCK165,RLCK213,RLCK110,RLCK328,_,RLCK277,RLCK235,RLCK81,RLCK101,RLCK377,RLCK149,RLCK245,RLCK331,BPH15,RLCK215,RLCK279,RLCK178,RLCK360,RLCK51,RLCK248,RLCK159,CTB4A,RLCK338,RLCK267,RLCK264,RLCK205,RLCK201,RLCK362,RLCK307,RLCK361,RLCK190,RLCK152,RLCK315,RLCK249,RLCK234,RLCK270,RLCK214,RLCK269,RLCK254,RLCK13,RLCK334,RLCK272,RLCK353	OsRLCK185,OsRLCK118,OsRLCK199, LRRK1, OsLRRK1,OsRLCK370,OsRLCK193, RLCK193, OsCrRLK1L13, CrRLK1L13, OsMRLK40, MRLK40, FLR9, OsFLR9,OsRLCK339, OsJRL25, JRL25,OsRLCK354, OsRLCK355, RLCK355,OsPUB62, PUB62, OsRLCK91,  OsPUB62, PUB62,OsRLCK311,OsRLCK313,OsRLCK162, SDK6, OsSDK6,OsRLCK156,OsWAK71, OsRLCK229, RLCK229,OsRLCK86, PTK2, OsPTK2,OsWAK77, OsRLCK252, RLCK252,OsRLCK10,OsRLCK337,OsRLCK323,OsRLCK299,OsRLCK257,OsRLCK309,OsRLCK107,OsRLCK343,OsRLCK144,OsRLCK322,OsRLCK200, PTK7, OsPTK7,OsRLCK151,OsRLCK175, OsPERK5, PERK5,OsRLCK55,OsRLCK191,OsRLCK320,OsRLCK131, SDRLK-23, OsSDRLK-23, SDRLK23, OsSDRLK23,OsRLCK268,OsRLCK271,OsRLCK17,OsRLCK187,OsPUB50, PUB50, OsRLCK93,OsWAK81, OsRLCK273, RLCK273,OsPUB70, PUB70, OsRLCK197, UCIP19, OsUCIP19,  OsPUB70, PUB70, OsBSK5, BSK5,OsRLCK177,OsRLCK308, OsBSK2, BSK2,OsRLCK98, OsBSK1, BSK1, OsBSK1-1, BSK1-1,OsRLCK295,OsRLCK319, OsCRLK21, CRLK21,OsRLCK169,OsRLCK171,OsRLCK174,OsRLCK244,OsWAK100, OsRLCK291, RLCK291,OsRLCK164, SDK14, OsSDK14,OsRLCK242,OsRLCK224,OsRLCK325,OsRLCK260,OsRLCK172,OsRLCK324,OsRLCK46, OsMRLK5, MRLK5,OsRLCK304, OsBSK1-2, BSK1-2, OsBSK1,OsRLCK363,OsRLCK321,OsRLCK261,OsRLCK310, LecRK, OsLecRK, SDK2, OsSDK2,OsRLCK289,OsRLCK317,OsRLCK198, SDRLK-37, OsSDRLK-37, SDRLK37, OsSDRLK37,OsRLCK221,OsRLCK301,OsRLCK262,OsRLCK265, OsMRLK55, MRLK55,OsRLCK167,OsWAK82, OsRLCK274, RLCK274,Os8Tak2, YK21, OsRLCK12, RLCK12, RLK20, OsRLK20,OsRLCK302,OsRLCK136, OsLecRK4, LecRK4, SDRLK-LecRK4, OsSDRLK-LecRK4,OsRLCK146,OsRLCK158,OsRLCK296,OsRLCK355,OsRLCK189, OsSTA156,OsWAK125, OsRLCK368, RLCK368, OsWAK-RLP,OsWAK116, OsRLCK332, RLCK332,OsWAK118, OsRLCK333, RLCK333,OsWAK126, OsRLCK374, RLCK374,OsWAK27, OsRLCK114, RLCK114,OsWAK44, OsRLCK142, RLCK142,OsWAK61, OsRLCK195, RLCK195,OsWAK119, OsRLCK335, RLCK335,OsWAK68, OsRLCK225, RLCK225,OsWAK69, OsRLCK231, RLCK231,OsWAK66, OsRLCK224, RLCK224,OsRLCK70,OsRLCK294,OsRLCK346,OsRLCK288,OsRLCK208,OsRLCK303,OsRLCK283,OsRLCK212,OsRLCK218,OsRLCK253,OsRLCK25,OsRLCK203, PTK8, OsPTK8,OsRLCK37, Gnk2-K1, OsGnk2-K1,OsWD40-188, OsRLCK318,OsWD40-186, OsRLCK316,  OsDWD70, DWD70,OsRLCK21,OsRLCK133,OsRLCK176,OsRLCK135, OsLecRK3, LecRK3, SDRLK-LecRK3, OsSDRLK-LecRK3,OsRLCK329,OsRLCK3,OsWAK47, OsRLCK147, RLCK147,OsWAK70, OsRLCK230, RLCK230,OsRLCK138, SDK5, OsSDK5,OsRLCK227,OsRLCK186,OsRLCK120,OsRLCK1,OsPUB51, PUB51, OsRLCK194, OsUSP27, USP27,  OsPUB51, PUB51,OsRLCK124,OsRLCK211,OsRLCK284, YK12, PTK16, OsPTK16, STK, OsSTK,OsRLCK379,OsRLCK345,OsRLCK367,OsRLCK369,OsRLCK378,OsRLCK196,OsRLCK371,OsRLCK376,OsRLCK373,OsRLCK372,OsRLCK20,OsRLCK359,OsRLCK365,OsRLCK222,OsRLCK364,OsRLCK357,OsRLCK24,OsRLCK351,OsRLCK358,OsRLCK347,OsRLCK348,OsRLCK153,OsRLCK356,OsRLCK352,OsWAK4, OsRLCK32, RLCK32,OsRLCK350,OsFON1, fon1, OsRLCK219, RLCK219,OsRLCK130,OsPUB61, PUB61, OsRLCK285, OsUSP35, USP35,  OsPUB61, PUB61,OsRLCK314, 25L2,OsRLCK312,OsRLCK251,OsWAK12, OsRLCK75, RLCK75,OsWAK72, OsRLCK228, RLCK228,OsWAK93, OsRLCK286, RLCK286,OsWAK102, OsRLCK293, RLCK293,OsWAK98, OsRLCK287, RLCK287,OsWAK36, OsRLCK140, RLCK140,OsRLCK9,OsRLCK14,OsRLCK22,OsRLCK30,OsRLCK38,OsRLCK45,OsRLCK48,OsRLCK52,OsRLCK54,OsRLCK63,OsRLCK65,OsRLCK71,OsRLCK80,OsRLCK84,OsRLCK92,OsRLCK94,OsRLCK95,OsRLCK97,OsRLCK108,OsRLCK123,OsRLCK125,OsRLCK129,OsRLCK132,OsRLCK137,OsRLCK139,OsRLCK141,OsRLCK148,OsRLCK150,OsRLCK155,OsRLCK157,OsRLCK170,OsRLCK68, OsUSP9, USP9,OsPUB59, PUB59, OsRLCK111,  OsPUB59, PUB59,OsPUB53, PUB53, OsRLCK305, OsMed2_1, Med2_1 ,  OsPUB53, PUB53,OsRLCK43, SDK4, OsSDK4,OsRLCK15,OsRLCK220,OsRLCK223,OsRLCK226,OsRLCK236,OsRLCK238,OsRLCK243,OsRLCK247,OsRLCK256,OsRLCK258,OsRLCK181, RLCK181, OsZ15,OsRLCK154, STRK1, OsSTRK1,OsRLCK2, rrsRLK,OsWAK101, OsRLCK292, RLCK292,OsRLCK126,OsRLCK297,OsRLCK7,OsRLCK366,OsRLCK210,OsRLCK184,OsRLCK188,GUDK, OsRLCK103,OsRLCK342, OsSTA269,OsRLCK344,OsWAK129, OsRLCK375, RLCK375, OsWAK129b,OsWAK15, OsRLCK76, RLCK76,OsRLCK255, PTK13, OsPTK13,OsRLCK278, RLCK278, PTK15, OsPTK15,OsRLCK340,OsRLCK183, OsCrRLK1L2, CrRLK1L2, OsMRLK31, MRLK31, FLR4, OsFLR4,OsRLCK105, OsUSP16, USP16,OsRLCK266, OsSIRK1, SIRK1, OsMRLK60, MRLK60,OsRLCK180, SDRLP-9, OsSDRLP-9, SDRLP9, OsSDRLP9,OsRLCK326,OsRLCK209, SDRLP-10, OsSDRLP-10, SDRLP10, OsSDRLP10,OsRLCK206,OsRLCK233,OsRLCK349,OsRLCK300, PTK18, OsPTK18,OsRLCK50, OsSPARK5, SPARK5,OsRLCK327,OsRLCK85, OsER2, ER2,OsRLCK204, OsER1, ER1,OsWAK16, OsRLCK77, RLCK77,OsRLCK179, SDRLP-3, OsSDRLP-3, SDRLP3, OsSDRLP3,OsRLCK202,OsPUB52, PUB52, OsRLCK280, OsUSP33, USP33,  OsPUB52, PUB52,OsPUB57, PUB57, OsRLCK112,  OsPUB57, PUB57,OsPti1b, Pti1b, OsRLCK33,OsRLCK250,OsRLCK290,OsLysM-RLK10, LysM-RLK10, OsRLCK276, OsCERK2/OsRLK10, OsCERK2, OsRLK10, CERK2, RLK10,OsLysM-RLK8, LysM-RLK8, OsRLCK330,OsRLCK239,OsRLCK19,OsPUB48, PUB48, OsRLCK69, OsUSP10, USP10,  OsPUB48, PUB48,OsRLCK341,OsRLCK161, OsCrRLK1L9, CrRLK1L9, OsMRLK19, MRLK19, FLR8, OsFLR8,OsRLCK115,RLCK121, OsRLCK121, SDK13, OsSDK13, OsPWL1,OsRLCK116,OsRLCK117,OsRLCK113,OsPUB56, PUB56, OsRLCK281, OsUSP34, USP34,  OsPUB56, PUB56,OsRLCK106,OsRLCK102,OsRLCK104,OsRLCK298, PTK17, OsPTK17,OsRLCK78,OsRLCK11,OsRLCK36, Gnk2RLK-2, OsGnk2RLK-2,OsRLCK263,OsRLCK79,OsRLCK216, OsRRK1, RRK1,OsRLCK232, PTK9, OsPTK9,OsRLCK182,OsRLCK96,OsRLCK100,OsRLCK99,OsRLCK90,OsRLCK88,OsRLCK89,OsRLCK82,OsEnS-81, OsRLCK192,OsRLCK128,OsRLCK16,OsRLCK74,OsRLCK336, OsJRL22, JRL22,OsRLCK145, OsJRL12, JRL12,OsWAK45, OsRLCK143, RLCK143,OsRLCK73,OsRLCK41,OsRLCK119, OsBSK4, BSK4,OsRLCK66,OsRLCK4,OsRLCK61, OsUSP8, USP8,OsRLCK64,OsRLCK160, PTK6, OsPTK6,OsRLCK67,OsRLCK72,OsRLCK56,OsRLCK42,OsRLCK62,OsRLCK59,OsRLCK60,OsRLCK58,OsRLCK47,OsRLCK53,OsRLCK49,OsRLCK44,OsRLCK282,OsRLCK18,OsRLCK27,OsRLCK23,OsRLCK109, RLCK109, OsBBS1, OSBBS1/OsRLCK109, PTK4, PTK4/BBS1, OsPTK4,OsRLCK237,OsRLCK168,OsRLCK166,OsRLCK28,OsRLCK35,OsRLCK39, OsUSP4, USP4,OsRLCK122, OsUSP20, USP20,OsRLCK57,OsRLCK5,OsRLCK31,OsRLCK34,OsRLCK217,OsRLCK29,OsPUB47, PUB47, OsRLCK207, OsUSP29, USP29,  OsPUB47, PUB47,OsRLCK163, SDK7, OsSDK7,OsRLCK26,OsRLCK173, OsBSK3, BSK3,OsRLCK40, PTK1, OsPTK1,OsPUB54, PUB54, OsRLCK306,  OsPUB54, PUB54,OsRLCK240,OsRLCK87, OsUSP15, USP15,OsRLCK8,OsRLCK6,OsRLCK259,OsRLCK275,OsRLCK83,OsRLCK241, PTK11, OsPTK11,OsRLCK165, SDK9, OsSDK9,OsRLCK213,OsRLCK110, PTK5, OsPTK5,OsRLCK328,ORK1, OsRLCK246, RLCK246,OsRLCK277,OsRLCK235,OsPUB55, PUB55, OsRLCK81,  OsPUB55, PUB55,OsRLCK101, PTK3, OsPTK3,OsRLCK377, OsRLK902-2, RLK902-2,OsRLCK149,OsRLCK245, PTK12, OsPTK12,OsRLCK331,RLCK134, OsRLCK134, OsLecRK1, LecRK1, SDRLK-LecRK1, OsSDRLK-LecRK1, OslecRK, lecRK, Bph15, OsBph15, Bph15 (Qbp2), Qbp2, qBPH-4,OsRLCK215,OsRLCK279, SDRLK-46, OsSDRLK-46, SDRLK46, OsSDRLK46,OsPti1a, Pti1a, OsRLCK178,OsRLCK360, SDK3, OsSDK3,OsRLCK51, OsPSRK2, PSRK2, SDRLK-PSRK2, OsSDRLK-PSRK2,OsRLCK248, SDRLP-5, OsSDRLP-5, SDRLP5, OsSDRLP5,OsRLCK159, OsMRLK14, MRLK14,OsRLCK127, RLCK127, OsCTB4a, qCTB4-1,OsRLCK338, OsJRL24, JRL24,OsRLCK267, OsRPK1, RPK1, OsMRLP15, MRLP15,OsRLCK264, OsMRLK51, MRLK51,OsRLCK205, OsNRP9, NRP9,OsRLCK201, OsUSP28, USP28,OsRLCK362, OsUSP41, USP41,OsPUB49, PUB49, OsRLCK307, OsUSP38, USP38,  OsPUB49, PUB49,OsRLCK361, OsUSP40, USP40,OsRLCK190, OsMRLK39, MRLK39,OsRLCK152,OsRLCK315, OsUSP39, USP39,OsRLCK249, OsUSP32, USP32,OsRLCK234,OsRLCK270,OsRLCK214,OsRLCK269, CSK1, OsCSK1,OsRLCK254,OsRLCK13,OsRLCK334,OsRLCK272, PTK14, OsPTK14,OsRLCK353
41561	0	Kerrie L. Forrest, Bhave M.	Major intrinsic proteins (MIPs) in plants: a complex gene family with major impacts on plant phenotype	Funct. Integr. Genomics	7	263-289	2007	TIP1;2,NIP4;1,TIP4;1,NIP3;4,PIP2;7,NIP1;2,NIP3;2,TIP4;3,PIP2A,PIP2;3,NIP1;3,PIP2;9,LSI1,NIP1;1,SIP1;1,PIP2;8,PIP1A,TIP3;1,PIP2;2,TIP3;2,NIP1;5,PIP2;5,SIP1;2,TIP4;2,LSI6,NIP3;3,PIP2;6,TIP5;1,PIP2;10,PIP1;2,PIP2;4,NIP3;5,ASA,PIP1;3,TIP1;1,TIP2;1,TIP2;2,AM25	OsTIP1;2, TIP1-2, TIP1.2, TIP1,OsNIP4;1, NIP4-1, OsNIP4.1, NIP4.1,OsTIP4;1, TIP4-1,OsNIP3;4, NIP3-4,OsPIP2;7, PIP2.7, PIP2-7, OsPIP2-6, OsPIP-3A, PIP-3A,OsNIP1;2, NIP1-2, OsNIP1.2, NIP1.2,OsNIP3;2, NIP3-2, OsNIP3.2, NIP3.2,OsTIP4;3, TIP4.3, TIP4-3,OsPIP2a, PIP2-1, PIP2a, PIP2.1, OsPIP2;1, PIP2;1, OsPIP2-1,OsPIP2;3, PIP2-3, OsPIP2-2,OsNIP1;3, NIP1-3, OsNIP1.3, NIP1.3,OsPIP2;9, PIP2.9, PIP2-9,lsi1, NIP2-1, OsNIP2;1, NIP2;1, OsLsi1, lsi(t), OsNIP2.1/OsLsi1/OsSIIT1, OsNIP2.1, NIP2.1,OsNIP1;1, NIP1-1, rMIP1, MIP1, OsNIP1.1, NIP1.1,OsSIP1;1, SIP1-1, OsSIP1, SIP1,OsPIP2;8, PIP2.8, PIP2-8, OsPIP2-7,OsPIP1a, OsPIP1;1, PIP1a, RWC-1, PIP1-1, RWC1, OsPIP1-1, PIP1;1, PIP1-5,OsTIP3;1, TIP3-1, TIP3.1, TIP3, OsEnS-139,OsPIP2;2, PIP2-2, OsPIP2-3,OsTIP3;2, TIP3-2, OsEnS-70,OsNIP1;5, NIP1-5,OsPIP2;5, PIP2-5,OsSIP1;2, OsSTA98, OsSIP2, SIP2,OsTIP4;2, TIP4.2, TIP4-2,Lsi6, OsNIP2;2, NIP2-2, OsLsi6, OsNIP2.2/OsLsi6, OsNIP2.2, NIP2.2,OsNIP3;3, NIP3-3, OsNIP3.3, NIP3.3,OsPIP2;6, PIP2-6, OsPIP2-6, PIP2-5, OsPIP2-5,OsTIP5;1,OsPIP2;10, PIP2.10, PIP2-10,OsPIP1;2, PIP1-2, OsPIP1-2,OsPIP2;4, PIP2.4, PIP2-4, OsPIP2-4,OsNIP3;5, NIP3-5,OsNIP3;1, NIP3;1, NIP3-1, OsNIP3.1, NIP3.1, OsASA,OsPIP1;3. PIP1.3, PIP1-3, RWC3, RWC-3, OsPIP1-3,OsTIP1;1, TIP1-1, rTIP1,OsTIP2;1, TIP2-1, TIP2,OsTIP2;2, TIP2-2,AM25, OsNIP1;4, NIP1-4, OsNIP1.4, NIP1.4
41562	11283343	S Kawasaki, C Borchert, M Deyholos, H Wang, S Brazille, K Kawai, D Galbraith, H J Bohnert	Gene expression profiles during the initial phase of salt stress in rice.	Plant Cell	13(4)	889-905	2001	PIP2;2,PIP1A,PIP1;3	OsPIP2;2, PIP2-2, OsPIP2-3,OsPIP1a, OsPIP1;1, PIP1a, RWC-1, PIP1-1, RWC1, OsPIP1-1, PIP1;1, PIP1-5,OsPIP1;3. PIP1.3, PIP1-3, RWC3, RWC-3, OsPIP1-3
41563	15111723	Hong-Li Lian, Yu X., Ye Q., Ding X., Kitagawa Y., Sang-Soo Kwak, Wei-Ai Su, Zhang-Cheng Tang, Xiao-Song Ding	The role of aquaporin RWC3 in drought avoidance in rice.	Plant Cell Physiol.	45(4)	481-9	2004	PIP1;3	OsPIP1;3. PIP1.3, PIP1-3, RWC3, RWC-3, OsPIP1-3
41564	20107517	Wang K., Tang D., Hong L., Xu W., Huang J., Li M., Gu M., Xue Y., Cheng Z.	DEP and AFO regulate reproductive habit in rice.	PLoS Genet.	6(1)	e1000818	2010	RAP1A,LHS1	OsMADS15, FDRMADS3, RMADS215, MADS15, DEP,OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO, OsLHS1, OsLG3b, LG3b, qLGY3, LGY3, DLN80, OsDLN80, OLR, OsOLR, GW3p6, OsGW3p6, OsMADS1GW3p6, MADS1GW3p6, qLGY3/OsLG3b/GW3p6
41565	17409064	Shri Ram Yadav, Prasad K., Vijayraghavan U.	Divergent regulatory OsMADS2 functions control size, shape and differentiation of the highly derived rice floret second-whorl organ.	Genetics	176(1)	283-94	2007	MADS2,MADS4	OsMADS2, RMADS219, NMADS1, PI2, nmads1, DLN33, OsDLN33,OsMADS4, PI1, DLN140, OsDLN140
41566	14704206	Prasad K., Vijayraghavan U.	Double-stranded RNA interference of a rice PI/GLO paralog, OsMADS2, uncovers its second-whorl-specific function in floral organ patterning.	Genetics	165(4)	2301-5	2003	MADS2,MADS4	OsMADS2, RMADS219, NMADS1, PI2, nmads1, DLN33, OsDLN33,OsMADS4, PI1, DLN140, OsDLN140
41567	0	Khurram BASHIR, Yasuhiro ISHIMARU, Hugo SHIMO, Yusuke KAKEI, Takeshi SENOURA, Ryuichi TAKAHASHI, Yutaka SATO, Yuki SATO, Nobuyuki UOZUMI, Hiromi NAKANISHI, Naoko NISHIZAWA	Rice phenolics efflux transporter 2 (pez2) plays an important role in solubilizing apoplasmic iron	Soil Sci. Plant Nutr.	57	803-812	2011	PEZ2	OsPEZ2, OsMATE15, MATE15
41568	20197292	Kobayashi T., Ogo Y., May Sann Aung, Nozoye T., Reiko Nakanishi Itai, Nakanishi H., Yamakawa T., Naoko K Nishizawa	The spatial expression and regulation of transcription factors IDEF1 and IDEF2.	Ann. Bot.	105(7)	1109-17	2010	NAC36,ABI3	ONAC036, ONAC36, ONAC038, ONAC38, IDEF2, OsIDEF2,OsLFL2, LFL2, OsIDEF1, IDEF1, OsABI3
41569	16381838	Andersen,E.S., Rosenblad,M.A., Larsen,N., Westergaard,J.C., Burks,J., Wower,I.K., Wower,J., Gorodkin,J., Samuelsson,T. and Zwieb,C.	The tmRDB and SRPDB resources	Nucleic Acids Res.	34	D163-D168	2006		
41570	0	Blaner,A., Schneider,J. and Roeser,M.	Phylogenetic relationships in the grass family (Poaceae) based on the nuclear single copy locus topoisomerase 6 compared with chloroplast DNA	System. Biodivers. 12 (1), 111-124  REMARK DOI: 10.1080/14772000.2014.890137			2014	_,TOP6B	matK, ORF542 ,OsTOP6B, OsSPO11-6B
41571	25329378	Brozynska,M., Furtado,A. and Henry,R.J.	Direct chloroplast sequencing: comparison of sequencing platforms and analysis tools for whole chloroplast barcoding	PLoS ONE	9 (10)	E110387	2014		
41572	23894646	Chiu,C.C., Chen,L.J., Su,P.H. and Li,H.M.	Evolution of chloroplast J proteins	PLoS ONE	8 (7)	E70384	2013	_,_,_,DJA8,_,_,_,_,_,_,_,_,_,_,_,_,_,_	,OsDJC82, DJC82,OsDjA2,OsDjA8, DjA8,OsDjC56,OsDjC47,,OsDjC46,OsDjC66,OsDjC1,OsDjC60,OsDjC50,OsDjC36,OsDjC13,OsDJC31, DJC31,OsDjA7, OsDnaJ,OsDjC45,
41573	24416299	Gong,P., Zhao,M. and He,C.	Slow co-evolution of the MAGO and Y14 protein families is required for the maintenance of their obligate heterodimerization mode	PLoS ONE	9 (1)	E84842	2014	_,_,_,_,_	OsMAGO1, MAGO1,mago, OsMAGO2, MAGO2 ,OsY14b, Y14b,OsLFY, LFY,OsY14a, Y14a 
41574	14681369	Gueneau de Novoa,P. and Williams,K.P.	The tmRNA website: reductive evolution of tmRNA in plastids and other endosymbionts	Nucleic Acids Res.	32	D104-D108	2004		
41575	0	Jadhao,K.R., Samal,K.C., Pradhan,S.K. and Rout,G.R.	Studies on Molecular Characterization of DREB Gene in Indica Rice (Oryza sativa L.)	Hereditary Genet	3(1)	1-12	2014	DREB2A	OsDREB2A, OsDREB2a, ERF40, OsERF#040, OsERF040, OsERF40, AP2/EREBP#167, AP2/EREBP167
41576	0	Jia,L., Clegg,M. and Tao,J.	Evolutionary dynamics of the DNA-binding domains in putative R2R3-MYB genes identified from Oryza sativa ssp. indica and japonica genomes	Plant Physiol.			2003		
41578	24280452	Kamolsukyunyong,W., Sukhaket,W., Ruanjaichon,V., Toojinda,T. and Vanavichit,A.	Single-feature polymorphism mapping of isogenic rice lines identifies the influence of terpene synthase on brown planthopper feeding preferences	Rice (N Y)	6(1)	18	2013	STPS,TPS13,_,BPH3	OsSTPS, OsSTPS2, STPS2, OsEBFS, EBFS, TPS5, OsTPS5,TPS3, OsSTP3, OsTPS28, TPS28, OsTPS13, TPS35, OsTPS35, OsECBS, ECBS,OsTPS31, TPS31, OsSTPS, TPS46, tps46, OsTPS46, SSBis039, OsTPS10, TPS10, TPS7, OsTPS7,Bph3
41579	0	Karimian,M., Miroliaei,M., Ghaedi,K., Ehsanpour,A. and Zahraie,Z.	Construction of a Vector Containing the Coding Sequence of the Lipid Transfer Proten-2 (LTP2) Gene from Rice	J Mol Genet	3(1)	1-4	2011	LTP2	nsLTP2, OsnsLTP2, OsLTP2.3, Ltp2, OsLTP2, RLTP2, OsLtpII.3
41580	0	Kazama,T. and Toriyama,K.	A fertility restorer gene, Rf4, widely used for hybrid rice breeding encodes a pentatricopeptide repeat protein	Rice 7, 28  REMARK DOI:10.1186/s12284-014-0028-z			2014	_,_,_,_	PPR454, PPR10, PPR2,Rf4, Rf-4, PPR782a, PPR9, PPR3,PPR458, PPR7, PPR4,PPR782b
41581	21037258	Kozomara,A. and Griffiths-Jones,S.	miRBase: integrating microRNA annotation and deep-sequencing data	Nucleic Acids Res.	39	D152-D157	2011	miR1874,MIR5526,MIR530,MIR1862A,MIR394,MIR396A,MIR167J,MIR156F,MIR167D,MIR398B,MIR172A,MIR528,miR827,MIR399B,MIR159A,MIR169I,MIR1881,MIR172B,MIR1862B,MIR5340,MIR393,MIR395H,MIR1431,MIR818D,MIR160A,MIR5339,MIR319B,MIR396E,MIR396H,MIR399J,MIR444E,MIR529A,MIR399A,miR159E,MIR397A,MIR1846B,MIR3979,MIR820B,MIR439F,MIR1428E,MIR815B,MIR395C,MIR820A,MIR815A,MIR818A,MIR2093,MIR172C,MIR2121A,miR159C,MIR2097,MIR2096,MIR172D,MIR444F,MIR171D,MIR2118O,miR535,MIR2055,MIR395L,MIR1883A,SDT,MIR160B,MIR1846E,MIR1871,MIR1425,MIR2878,MIR815C,MIR156I,MIR156C,MIR1873,MIR1861L,MIR171F,MIR171E,MIR156J,MIR162A,MIR812F,MIR166N,MIR166B,MIR396C,MIR393B,MIR156E,miR159F,MIR156B,MIR156D,MIR169,MIR396B,MIR435,MIR5150,MIR319A,MIR814C,MIR1880,MIR5083,MIR396F,MIR395E,MIR816,MIR164E,MIR169g,MIR5537,MIR812E,MIR812M,MIR814B,MIR395B,MIR812G,MIR812J,MIR5154,MIR5158,MIR812H,MIR812I,MIR812C,MIR812B,MIR812D,MIR812A,MIR5508,MIR810A,MIR5147,MIR5148A,MIR5148C,MIR166A,MIR529B,MIR5074,MIR166I,MIR169F,MIR166C,MIR5151,MIR162B,MIR2875,MIR2879,MIR169N,MIR2905,MIR2870,MIR2871B,MIR1878,MIR2863C,MIR1862E,MIR2121B,MIR2863B,MIR166G,MIR167E,MIR2871A,MIR444B,MIR167A,MIR2874,MIR395I,MIR1879,MIR167G,MIR820C,MIR5153,MIR396G,MIR397B,MIR2873,MIR5143A,MIR5148B,MIR818B,MIR818C,MIR440,MIR437,MIR439H,MIR439E,MIR439A,MIR439C,MIR439D,MIR395S,MIR1857,MIR399H,MIR399C,MIR395Q,MIR395K,MIR395R,MIR1862G,MIR395J,MIR1863C,MIR1872,MIR1859,MIR1861E,MIR1861J,MIR1861K,MIR1862C,MIR1861I,MIR1861F,MIR1861G,MIR1861H,MIR1876,MIR1846A,MIR1861B,MIR1861C,MIR1861A,MIR160E,MIR1853,MIR1856,MIR169K,MIR1846D,MIR169L,MIR1849,MIR1851,MIR171I,MIR169M,MIR169O,MIR171H,MIR166L,MIR169J,MIR444D,MIR167C,MIR1439,MIR156A,MIR1429,MIR169C,MIR164B,MIR1436,MIR396D,MIR1320,MIR1441,MIR169E,MIR1863,MIR1442,MIR167B,MIR169B,MIR164D,MIR164F,MIR160C,MIR166K,MIR1875,MIR160D,MIR160F,MIR5146,MIR5539A,MIR5542,MIR1423,MIR5538,MIR164C,MIR166H,MIR5536,MIR5525,MIR5535,MIR5505,MIR5502,MIR5503,MIR1862F,MIR171,MIR5539B,MIR812K,MIR5490,MIR171C,MIR3980B,MIR171G,MIR166D,MIR2867,MIR166F,MIR156L,MIR1861M,MIR1432,MIR5498,MIR6249B,MIR1850,MIR3980A,MIR5159,MIR156G,MIR167F,MIR156K,MIR5076,MIR2863A,MIR5082,MIR1868,MIR171B,MIR1869,MIR1437,MIR444C,MIR812N,MIR5512A,MIR169R,MIR1865,MIR5522,MIR395D,MIR399D,MIR166M,MIR810B,MIR5161,MIR5160,MIR5337,miR159B,MIR3981,MIR5072,MIR164A,MIR166E,MIR5493,MIR5078,MIR408,MIR814A,MIR1319,MIR2869,MIR2866,MIR395N,MIR1861O,MIR1863B,MIR2864,MIR167I,MIR5534A,MIR812L,MIR5540,MIR1861D,MIR1864,MIR1870,MIR1883B,MIR2873B,MIR2880,MIR395Y,MIR3982,MIR1862D,MIR5145,MIR5149,MIR5485,MIR5513,MIR395G,MIR395M,MIR395P,MIR439B,MIR169H,MIR818E,MIR1860,MIR168A,miR159D,MIR167H,MIR5144,MIR439G,MIR5532,MIR444A,MIR812O,MIR5504,MIR390	OsmiR1874, osa-MIR1874osa-miR1874 osa-miR1874-3p,miR5526, Osa-miR5526, OsmiR5526,miR530, Osa-miR530, OsmiR530, osa-MIR530, osa-miR530 osa-miR530-3p, osa-miR530-5p,miR1862a, osa-miR1862a, osa-MIR1862a,OsmiR394, miR394, osa-MIR394,miR396a, osa-miR396a, osa-MIR396aosa-miR396a-3p osa-miR396a-5p, OsmiR396a,miR167j, osa-miR167j, osa-MIR167j,miR156f, osmiR156f, OsmiR156f, osa-miR156f, osa-MIR156fosa-miR156f-3p osa-miR156f-5p,miR167d, osa-miRNA167d, osa-miR167d, osa-miR167d-3p, osa-miR167d-5p,miR398b, osa-miR398b, osa-MIR398b, OsmiR398b,OsmiR172a, miR172a, osa-MIR172a, Osa-miR172a ,miR528, Osa-miR528, OsmiR528, OsMIR528, osa-MIR528, miR528*, osa-miR528, osa-miR528-5p, MIR528-T1, MIR528-T2,miR827a, OsmiR827a, miR827, osa-miR827, osa-MIR827, OsMiR827, miR827b, osa-miR827b, osa-MIR827b,OsmiR399b, osa-MIR399b, miR399b,miR159a, osa-miR159a, osa-MIR159a, OsmiR159a, OsmiR159a.2, miR159a.2, OsmiR159a.1, miR159a.1, osa-miR159a.1, osa-miR159a.2,miR169i, osa-miR169i, osa-MIR169iosa-miR169i-3p osa-miR169i-5p.2,miR1881, osa-miR1881, osa-MIR1881,OsmiR172b, miR172b, osa-MIR172b, Osa-miR172b ,miR1862b, osa-miR1862b, osa-MIR1862b,miR5340, osa-miR5340, osa-MIR5340,OsmiR393, osa-MIR393, osa-MIR393a, OsmiR393a, miR393a ,OsmiR395h, miR395h, osa-MIR395h, OsamiR395h ,miR1431, osa-miR1431, osa-MIR1431,miR818d, osa-miR818d, osa-MIR818d,miR160a, osa-miR160a, osa-MIR160aosa-miR160a-3p osa-miR160a-5p, OsMIR160a ,miR5339, osa-miR5339, osa-MIR5339,OsmiR319b, Osa-miR319b,miR396e, osa-miR396e, osa-MIR396eosa-miR396e-3p osa-miR396e-5p,miR396h, osa-miR396h, osa-MIR396h,OsmiR399j, osa-miR399j, osa-MIR399j, Os-miR399j, miR399j,miR444e, osa-MIR444e,miR529a, Osa-miR529a, OsmiR529a,OsmiR399a, osa-miR399a, osa-MIR399a, Os-miR399a, miR399a,OsmiR159e, osa-MIR159e,miR397a, osa-miR397a, osa-MIR397a, OsmiR397a,miR1846b, osa-miR1846b, osa-MIR1846bosa-miR1846b-5p,miR3979, osa-miR3979, osa-MIR3979osa-miR3979-3p osa-miR3979-5p,miR820b, osa-miR820b, osa-MIR820b, OsmiR820b,miR439f, osa-MIR439f,OsmiR1428e, miR1428e, osa-miR1428e, osa-MIR1428e, miR1428e_3posa-miR1428e-3p,miR815b, osa-miR815b, osa-MIR815b, OsmiR815b,OsmiR395c, miR395c, osa-MIR395c,miR820a, osa-miR820a, osa-MIR820a, OsmiR820a,miR815a, osa-miR815a, osa-MIR815a, OsmiR815a,miR818a, osa-miR818a, osa-MIR818a,miR2093, osa-miR2093, osa-MIR2093osa-miR2093-5p,OsmiR172c, miR172c, osa-MIR172c, Osa-miR172c ,miR2121a, osa-miR2121a, osa-MIR2121a,OsmiR159c, osa-MIR159c,miR2097, osa-miR2097, osa-MIR2097osa-miR2097-5p,miR2096, osa-miR2096, osa-MIR2096osa-miR2096-3p osa-miR2096-5p,OsmiR172d, miR172d, osa-MIR172d osa-miR172d osa-miR172d-3p osa-miR172d-5p, Osa-miR172d,miR444f, osa-MIR444f,miR171d, osa-miR171dosa-miR171d-3p osa-miR171d-5p,miR2118o, osa-miR2118o, osa-MIR2118o,OsmiR535, osa-MIR535osa-miR535 osa-miR535-3p osa-miR535-5p,miR2055, OsmiR2055, osa-miR2055, osa-MIR2055,OsmiR395l, miR395l, osa-MIR395l,miR1883a, osa-miR1883a, osa-MIR1883a,miR156h, OsmiR156h, osmiR156h, osa-miR156h, osa-MIR156hosa-miR156h-3p osa-miR156h-5p,miR160b, osa-miR160b, osa-MIR160b, NolmiR-36osa-miR160b-3p osa-miR160b-5p, OsMIR160b,miR1846e, osa-miR1846e, osa-MIR1846e,miR1871, osa-miR1871, osa-MIR1871,OsmiR1425, miR1425, osa-miR1425, osa-MIR1425, osa-miR1425-3p, osa-miR1425-5p,miR2878, osa-miR2878, osa-MIR2878, osa-miR2878-5p, osa-miR2878-3posa-miR2878-3p osa-miR2878-5p,miR815c, osa-miR815c, osa-MIR815c, OsmiR815c,miR156i, OsmiR156i, osmiR156i, osa-miR156i, osa-MIR156i,miR156c, OsmiR156c, osmiR156c, osa-miR156c,osa-MIR156c, miR156c*osa-miR156c-3p osa-miR156c-5p,miR1873, osa-miR1873, osa-MIR1873,miR1861l, osa-miR1861l, osa-MIR1861l,miR171f, osa-miR171f, osa-miR171f-3p osa-miR171f-5p,miR171e, osa-miR171e, osa-miR171e-3p, osa-miR171e-5p,miR156j, OsmiR156j, osmiR156j, osa-miR156j, osa-MIR156josa-miR156j-3p osa-miR156j-5p,miR162a, osa-miR162a, osa-MIR162a, OsMIR162a,miR812f, osa-miR812f, osa-MIR812f,miR166n, osa-miR166n, osa-MIR166n, miR166j, osa-miR166j, osa-MIR166j, osa-miR166j-3p, osa-miR166j-5p,miR166b, osa-miR166bosa-miR166b-3p osa-miR166b-5p, OsmiR166b,miR396c, osa-miR396c, osa-MIR396c, osa-miR396c-3p, osa-miR396c-5p, OsmiR396c,OsmiR393b, miR393b, osa-MIR393bosa-miR393b osa-miR393b-3p osa-miR393b-5p,miR156e, OsmiR156e, osmiR156e, osa-miR156e, osa-MIR156e,OsmiR159f, osa-MIR159f,miR156b, OsmiR156b, osmiR156b, osa-miR156b, osa-MIR156b, miR156b*osa-miR156b-3p osa-miR156b-5p,miR156d, OsmiR156d, osmiR156d, osa-miR156d, osa-MIR156d,miR169, osa-miR169, osa-MIR169a, miR169a, osa-miR169a,miR396b, osa-miR396b, osa-MIR396bosa-miR396b-3p osa-miR396b-5p, OsmiR396b,miR435, osa-MIR435,miR5150, osa-miR5150, osa-MIR5150osa-miR5150-3p osa-miR5150-5p,OsmiR319a, Osa-miR319a, osa-MIR319aosa-miR319a osa-miR319a-3p osa-miR319a-3p.2-3p,miR814c, osa-miR814c, osa-MIR814c,miR1880, osa-miR1880, osa-MIR1880,miR5083, osa-miR5083, osa-MIR5083,miR396f, osa-miR396f, osa-MIR396fosa-miR396f-3p osa-miR396f-5p,OsmiR395e, miR395e, osa-MIR395e,miR816, osa-miR816, osa-MIR816,miR164e, osa-MIR164e,MIR-169g, osa-MIR169g,miR5537, Osa-miR5537, OsmiR5537,miR812e, osa-miR812e, osa-MIR812e,miR812m, osa-miR812m, osa-MIR812m,miR814b, osa-miR814b, osa-MIR814b,OsmiR395b, miR395b, osa-MIR395b,miR812g, osa-miR812g, osa-MIR812g,miR812j, osa-miR812j, osa-MIR812j,miR5154, osa-miR5154, osa-MIR5154, MIR5154-3p,miR5158, osa-miR5158, osa-MIR5158, MIR5158-3p,miR812h, osa-miR812h, osa-MIR812h,miR812i, osa-miR812i, osa-MIR812i,miR812c, osa-miR812c, osa-MIR812c,miR812b, osa-miR812b, osa-MIR812b,miR812d, osa-miR812d, osa-MIR812d,miR812a, osa-miR812a, osa-MIR812a,miR5508, osa-miR5508, osa-MIR5508,miR810a, osa-miR810a, osa-MIR810a,miR5147, osa-miR5147, osa-MIR5147,miR5148a, osa-miR5148a, osa-MIR5148a, MIR5148a-3p,miR5148c, osa-miR5148c, osa-MIR5148c, MIR5148c-3p,miR166a, osa-miR166aosa-miR166a-3p osa-miR166a-5p,miR529b, Osa-miR529b, OsmiR529b,miR5074, osa-miR5074, osa-MIR5074,miR166i, osa-miR166iosa-miR166i-3p,miR169f, osa-miR169f, osa-MIR169f, osa-miR169f.2,miR166c, osa-miR166cosa-miR166c-3p osa-miR166c-5p,miR5151, osa-miR5151, osa-MIR5151, MIR5151-5p,miR162b, osa-miR162b, osa-MIR162b ,miR2875, osa-miR2875, osa-MIR2875,miR2879, osa-miR2879, osa-MIR2879,miR169n, osa-miR169n, osa-MIR169n,miR2905, osa-miR2905, osa-MIR2905,miR2870, osa-miR2870, osa-MIR2870,miR2871b, osa-miR2871b, osa-MIR2871b,miR1878, osa-miR1878, osa-MIR1878,miR2863c, osa-miR2863c, osa-MIR2863c,miR1862e, osa-miR1862e, osa-MIR1862e,miR2121b, osa-miR2121b, osa-MIR2121b,miR2863b, osa-miR2863b, osa-MIR2863b,miR166g, osa-miR166gosa-miR166g-3p osa-miR166g-5p,miR167e, osa-miR167e, osa-miRNA167e osa-miR167e-3p osa-miR167e-5p,miR2871a, osa-miR2871a, osa-MIR2871a, MIR2871a-5posa-miR2871a-3p osa-miR2871a-5p,miR444b, osa-MIR444b, osa-miR444b, osa-miR444b.1, osa-miR444b.2,miR167a, osa-miR167aosa-miR167a-3p osa-miR167a-5p, OsmiR167a,miR2874, osa-miR2874, osa-MIR2874,OsmiR395i, miR395i, osa-MIR395i,miR1879, osa-miR1879, osa-MIR1879,miR167g, osa-miR167g, osa-miRNA167g ,miR820c, osa-miR820c, osa-MIR820c, OsmiR820c,miR5153, osa-miR5153, osa-MIR5153, MIR5153-3p,miR396g, osa-miR396g, osa-MIR396g,miR397b, osa-miR397b, osa-MIR397b, miR397b*, OsmiR397b, Os-MIR397b,miR2873, osa-miR2873, osa-MIR2873, osa-MIR2873a,miR5143a, osa-miR5143a, osa-MIR5143a,miR5148b, osa-miR5148b, osa-MIR5148b, MIR5148b-3p,miR818b, osa-miR818b, osa-MIR818b,miR818c, osa-miR818c, osa-MIR818c,miR440, osa-MIR440,miR437, osa-MIR437,miR439h, osa-MIR439h,miR439e, osa-MIR439e,miR439a, osa-MIR439a,miR439c, osa-MIR439c,miR439d, osa-MIR439d,OsmiR395s, miR395s, osa-MIR395s,miR1857, osa-miR1857, osa-MIR1857osa-miR1857-3p osa-miR1857-5p,OsmiR399h, osa-MIR399h,OsmiR399c, osa-MIR399c, miR399c,OsmiR395q, miR395q, osa-MIR395q,OsmiR395k, miR395k, osa-MIR395k,OsmiR395r, miR395r, osa-MIR395r,miR1862g, osa-miR1862g, osa-MIR1862g,OsmiR395j, miR395j, osa-MIR395j,miR1863c, osa-miR1863c, osa-MIR1863c,miR1872, osa-miR1872, osa-MIR1872,miR1859, osa-miR1859, osa-MIR1859 ,miR1861e, osa-miR1861e, osa-MIR1861e,miR1861j, osa-miR1861j, osa-MIR1861j,miR1861k, osa-miR1861k, osa-MIR1861k,miR1862c, osa-miR1862c, osa-MIR1862c,miR1861i, osa-miR1861i, osa-MIR1861i,miR1861f, osa-miR1861f, osa-MIR1861f,miR1861g, osa-miR1861g, osa-MIR1861g,miR1861h, osa-miR1861h, osa-MIR1861h,miR1876, osa-miR1876, osa-MIR1876,miR1846a, osa-miR1846a, osa-MIR1846aosa-miR1846a-5p,miR1861b, osa-miR1861b, osa-MIR1861b,miR1861c, osa-miR1861c, osa-MIR1861c,miR1861a, osa-miR1861a, osa-MIR1861a,miR160e, osa-miR160e, osa-MIR160eosa-miR160e-5p,miR1853, osa-miR1853, osa-MIR1853osa-miR1853-3p,miR1856, osa-miR1856, osa-MIR1856,miR169k, osa-miR169k, osa-MIR169k,miR1846d, osa-miR1846d, osa-MIR1846dosa-miR1846d-3p osa-miR1846d-5p,miR169l, osa-miR169l, osa-MIR169l,miR1849, osa-miR1849, osa-MIR1849,miR1851, osa-miR1851, osa-MIR1851,miR171i, osa-miR171iosa-miR171i-3p osa-miR171i-5p,miR169m, osa-miR169m, osa-MIR169m,miR169o, osa-miR169o, osa-MIR169o,miR171h, osa-miR171h,miR166l, osa-miR166losa-miR166l-3p osa-miR166l-5p,miR169j, osa-miR169j, osa-MIR169j,miR444d, osa-MIR444d, osa-miR444d, osa-miR444d.1, osa-miR444d.2, osa-miR444d.3,miR167c, osa-miR167cosa-miR167c-3p osa-miR167c-5p,miR1439, osa-miR1439, osa-MIR1439,miR156a, OsmiR156a, osmiR156a, osa-miR156a, osa-MIR156a,miR1429, osa-miR1429, osa-MIR1429osa-miR1429-3p osa-miR1429-5p,miR169c, osa-miR169c, osa-MIR169c,miR164b, osa-miR164b,miR1436, osa-miR1436, osa-MIR1436,miR396d, osa-miR396d, osa-MIR396d,miR1320, osa-miR1320, osa-MIR1320osa-miR1320-3p osa-miR1320-5p,miR1441, osa-miR1441, osa-MIR1441,miR169e, osa-miR169e, osa-MIR169e,miR1863, osa-miR1863, osa-MIR1863, osa-MIR1863a, osa-miR1863a,miR1442, osa-miR1442, osa-MIR1442,miR167b, osa-miR167b,miR169b, osa-miR169b, osa-MIR169b,miR164d, osa-miR164d,miR164f, osa-miR164f,miR160c, osa-miR160c, osa-MIR160cosa-miR160c-3p osa-miR160c-5p,miR166k, osa-miR166kosa-miR166k-3p osa-miR166k-5p,miR1875, osa-miR1875, osa-MIR1875,miR160d, osa-miR160d, osa-MIR160dosa-miR160d-3p osa-miR160d-5p,miR160f, osa-miR160f, osa-MIR160f, osa-miR160f-3p osa-miR160f-5p,miR5146, osa-miR5146, osa-MIR5146, MIR5146-3p,miR5539a, Osa-miR5539a, OsmiR5539a,miR5542, Osa-miR5542, OsmiR5542,miR1423, osa-miR1423, osa-MIR1423, miR1423bosa-miR1423-5p,miR5538, Osa-miR5538, OsmiR5538,miR164c, osa-miR164c,miR166h, osa-miR166hosa-miR166h-3p osa-miR166h-5p,miR5536, Osa-miR5536, OsmiR5536,miR5525, Osa-miR5525, OsmiR5525,miR5535, Osa-miR5535, OsmiR5535,miR5505, Osa-miR5505, OsmiR5505,miR5502, Osa-miR5502, OsmiR5502,miR5503, Osa-miR5503, OsmiR5503,miR1862f, osa-miR1862f, osa-MIR1862f,miR171, osa-miR171, miR171a, osa-miR171a, osa-MIR171a,miR5539b, Osa-miR5539b, OsmiR5539b,miR812k, Osa-miR812k, OsmiR812k,miR5490, Osa-miR5490, OsmiR5490,miR171c, osa-miR171cosa-miR171c-3p osa-miR171c-5p,miR3980b, osa-miR3980b, osa-MIR3980b, osa-miR3980a-3p, osa-miR3980a-5p,miR171g, osa-miR171g,miR166d, osa-miR166dosa-miR166d-3p osa-miR166d-5p,miR2867, osa-miR2867, osa-MIR2867osa-miR2867-3p osa-miR2867-5p,miR166f, osa-miR166f,miR156l, OsmiR156l, osmiR156l, osa-miR156l, osa-MIR156l, osa-miR156l-3p, osa-miR156l-5p,miR1861m, osa-miR1861m, osa-MIR1861m,miR1432, osa-miR1432, osa-miR1432-5p, osa-MIR1432,miR5498, Osa-miR5498, OsmiR5498,miR6249b, Osa-miR6249b, OsmiR6249b,miR1850, osa-miR1850, osa-MIR1850, osa-miR1850.1, osa-miR1850.2, osa-miR1850.3,miR3980a, osa-miR3980a, osa-MIR3980a, osa-miR3980a-3p, osa-miR3980a-5p,miR5159, osa-miR5159, osa-MIR5159,miR156g, OsmiR156g, osmiR156g, osa-miR156g, osa-MIR156gosa-miR156g-3p osa-miR156g-5p,miR167f, osa-miR167f, osa-miRNA167f ,miR156k, OsmiR156k, osmiR156k, osa-miR156k, osa-MIR156k,miR5076, osa-miR5076, osa-MIR5076,miR2863a, osa-miR2863a, osa-MIR2863a,miR5082, osa-miR5082, osa-MIR5082,miR1868, osa-miR1868, osa-MIR1868,miR171b, osa-miR171b,miR1869, osa-miR1869, osa-MIR1869,miR1437, osa-miR1437, osa-MIR1437, osa-MIR1437a, osa-miR1437a,miR444c, osa-MIR444c, osa-miR444c, osa-miR444c.1, osa-miR444c.2,miR812n, osa-miR812n, osa-MIR812nosa-miR812n-3p osa-miR812n-5p,miR5512a, Osa-miR5512a, OsmiR5512a,miR169r, osa-miR169r, osa-MIR169r, osa-miR169r-3p osa-miR169r-5p,miR1865, osa-miR1865, osa-MIR1865osa-miR1865-3p osa-miR1865-5p,miR5522, Osa-miR5522, OsmiR5522,OsmiR395d, miR395d, osa-MIR395d,OsmiR399d, osa-miR399d, osa-MIR399d, Os-miR399d, miR399d,miR166m, osa-miR166m,miR810b, osa-miR810b, osa-MIR810b, Osa-miR810b.2, miR810-3p, osa-miR810b.1, osa-miR810b.2,miR5161, osa-miR5161, osa-MIR5161, MIR5161-3p,miR5160, osa-miR5160, osa-MIR5160, MIR5160-3p,miR5337, osa-miR5337, osa-MIR5337, osa-MIR5337a,OsmiR159b, osa-MIR159b,miR3981, osa-miR3981, osa-MIR3981osa-miR3981-3p osa-miR3981-5p,miR5072, osa-miR5072, osa-MIR5072,miR164a, osa-miR164a,miR166e, osa-miR166eosa-miR166e-3p osa-miR166e-5p,miR5493, Osa-miR5493, OsmiR5493,miR5078, osa-miR5078, osa-MIR5078,miR408, osa-MIR408osa-miR408 osa-miR408-3p osa-miR408-5p, OsMIR408 ,miR814a, osa-miR814a, osa-MIR814a,miR1319, osa-miR1319, osa-MIR1319, osa-MIR1319a, osa-miR1319a,miR2869, osa-miR2869, osa-MIR2869,miR2866, osa-miR2866, osa-MIR2866,OsmiR395n, miR395n, osa-MIR395n,miR1861o, osa-miR1861o, osa-MIR1861o,miR1863b, osa-miR1863b, osa-MIR1863b, osa-miR1863b.2, MIR1863b.2-3p,miR2864, osa-miR2864, osa-MIR2864, osa-miR2864.1, osa-miR2864.2,miR167i, osa-miR167iosa-miR167i-3p osa-miR167i-5p,miR5534a, Osa-miR5534a, OsmiR5534a,miR812l, Osa-miR812l, OsmiR812l,miR5540, Osa-miR5540, OsmiR5540,miR1861d, osa-miR1861d, osa-MIR1861d,miR1864, osa-miR1864, osa-MIR1864,miR1870, osa-miR1870, osa-MIR1870osa-miR1870-3p osa-miR1870-5p,miR1883b, osa-miR1883b, osa-MIR1883b,miR2873b, osa-miR2873b, osa-MIR2873b,miR2880, osa-miR2880, osa-MIR2880,miR395y, osa-miR395y, osa-MIR395y,miR3982, osa-miR3982, osa-MIR3982osa-miR3982-3p osa-miR3982-5p,miR1862d, osa-miR1862d, osa-MIR1862d,miR5145, osa-miR5145, osa-MIR5145, MIR5145-5p,miR5149, osa-miR5149, osa-MIR5149, MIR5149-3p,miR5485, osa-miR5485, osa-MIR5485,miR5513, osa-miR5513, osa-MIR5513,OsmiR395g, miR395g, osa-MIR395g,OsmiR395m, miR395m, osa-MIR395m,OsmiR395p, miR395p, osa-MIR395p,miR439b, osa-MIR439b,miR169h, osa-miR169h, osa-MIR169h,miR818e, osa-miR818e, osa-MIR818e,miR1860, osa-miR1860, osa-MIR1860osa-miR1860-3p osa-miR1860-5p,miR168a, osa-miR168a, osa-MIR168a osa-miR168a-3p osa-miR168a-5p, OsMIR168a,OsmiR159d, osa-MIR159d,miR167h, osa-miR167h, osa-MIR167hosa-miR167h-3p osa-miR167h-5p,miR5144, osa-miR5144, osa-MIR5144, MIR5144-5p, MIR5144-3posa-miR5144-3p osa-miR5144-5p,miR439g, osa-MIR439g,miR5532, Osa-miR5532, OsmiR5532,OsMIR444a, osa-MIR444a, miR444aosa-miR444a osa-miR444a-3p.1 osa-miR444a-3p.2 osa-miR444a-5p,miR812o, Osa-miR812o, OsmiR812o, osa-miR812o-3p osa-miR812o-5p,miR5504, Osa-miR5504, OsmiR5504,OsmiR390, miR390, osa-MIR390osa-miR390, osa-miR390-3p, osa-miR390-5p
41582	24690362	Mariac,C., Scarcelli,N., Pouzadou,J., Barnaud,A., Billot,C., Faye,A., Kougbeadjo,A., Maillol,V., Martin,G., Sabot,F., Santoni,S., Vigouroux,Y. and Couvreur,T.L.	Cost-effective enrichment hybridization capture of chloroplast genomes at deep multiplexing levels for population genetics and phylogeography studies	Mol Ecol Resour	14(6)	1103-1113	2014		
41583	0	McIntyre,C.L., Winberg,B., Houchins,K., Appels,R. and Baum,B.R.	Relationships between Oryza species based on 5S DNA sequences	Plant Syst. Evol.  In press REMARK (sites)			1991		
41584	0	Nishizawa,Y. and Hibi,T.	Isolation and characterization of a cDNA for rice chitinase	Plant Sci.	76	211-218	1991		
41585	0	Pusadee,T., Oupkaew,P., Rerkasem,B., Jamjod,S. and Schaal,B.	Natural and Human Mediated Selection in a Landrace of Thai Rice (Oryza sativa L.)	Ann. Appl. Biol.			2014	WX1	wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx
41586	24272491	Reddy,P.S. and Padayatty,J.D.	Effects of 5' flanking sequences and changes in the 5' internal control region on the transcription of rice tRNA % MathType!MTEF!2!1!+-% feaafiart1ev1aaatCvAUfeBSjuyZL2yd9gzLbvyNv2CaerbuLwBLn% hiov2DGi1BTfMBaeXatLxBI9gBaerbd9wDYLwzYbItLDharqqtubsr% 4rNCHbGeaGqiVu0Je9sqqrpepC0xbbL8F4rqqrFfpeea0xe9Lq-Jc9% vqaqpepm0xbba9pwe9Q8fs0-yqaqpepae9pg0FirpepeKkFr0xfr-x% fr-xb9adbaqaaeGaciGaaiaabeqaamaabaabaaqcKbay-haafaqabe% GabaaabaGaae4raiaabYgacaqG5baabaGaae4raiaaboeacaqGdbaa% aaaa!3CC7![egin{array}{*{20}c} {{	ext{Gly}}} \ {{	ext{GCC}}} \ end{array} ]	Plant Mol. Biol.	11(5)	575-583	1988		
41588	0	Wan,J.	Pattern-recognition Receptor Confers Broad-Spectrum and Durable Insect Resistance in Rice	Nat. Biotechnol.			2014	BPH15,SDRLK64,LECRK2,SDRLK56,RLCK136,RLCK135	RLCK134, OsRLCK134, OsLecRK1, LecRK1, SDRLK-LecRK1, OsSDRLK-LecRK1, OslecRK, lecRK, Bph15, OsBph15, Bph15 (Qbp2), Qbp2, qBPH-4,OsLecRK paralog, SDRLK-64, OsSDRLK-64, OsSDRLK64,OsLecRK2, LecRK2, SDRLK-LecRK2, OsSDRLK-LecRK2,OsLecRK paralog, SDRLK-56, OsSDRLK-56, OsSDRLK56,OsRLCK136, OsLecRK4, LecRK4, SDRLK-LecRK4, OsSDRLK-LecRK4,OsRLCK135, OsLecRK3, LecRK3, SDRLK-LecRK3, OsSDRLK-LecRK3
41589	25483893	Wu,Y., Wang,Y., Li,J., Li,W., Zhang,L., Li,Y., Li,X., Li,J., Zhu,L. and Wu,G.	Development of a general method for detection and quantification of the P35S promoter based on assessment of existing methods	Sci Rep	4	7358	2014		
41590	0	Yamamoto,N., Kubota,T., Masumura,T., Shiraishi,N., Tanaka,K., Sugimoto,T. and Oji,Y.	Molecular cloning, gene expression and functional expression of a phosphoenolpyruvate carboxylase Osppc1 in developing rice seeds: implication of involvement in nitrogen accumulation	Seed Sci. Res.	24(1)	23-36	2014		
41591	0	Yamamoto,N., Kubota,T., Masumura,T., Shiraishi,N., Tanaka,K., Sugimoto,T. and Oji,Y.	Molecular cloning, gene expression and functional expression of a phosphoenolpyruvate carboxylase Osppc1 in developing rice seeds: implication of involvement in nitrogen accumulation	Seed Sci. Res.	24	23-36	2014		
41592	25162526	Yuan,F., Yang,H., Xue,Y., Kong,D., Ye,R., Li,C., Zhang,J., Theprungsirikul,L., Shrift,T., Krichilsky,B., Johnson,D.M., Swift,G.B., He,Y., Siedow,J.N. and Pei,Z.M.	OSCA1 mediates osmotic-stress-evoked Ca2+ increases vital for osmosensing in Arabidopsis	Nature	514(7522)	367-371	2014	OSCA2.4,OSCA2.3,OSCA1.3,OSCA2.1,OSCA1.1,ERD4,OSCA1.4,OSCA1.2,OSCA2.2,OSCA2.5,OSCA4.1	OsOSCA2.4, OsIOSCA2.4, OsDDP9, DDP9, OsDDP9.1,OsOSCA2.3, OsIOSCA2.3, OsDDP4, DDP4, OsDDP4.1,OsSTA149, OsOSCA1.3, OsIOSCA1.3, OsDDP5, DDP5, OsDDP5.1,OsOSCA2.1, OsIOSCA2.1, OsDDP10, DDP10, OsDDP10.1,OsOSCA1.1, OsIOSCA1.1, OsDDP1, DDP1, OsDDP1.1, OsDDP1.2, OsDDP1.3, OsDDP1.4,OsOSCA3.1, OSCA3.1, OsIOSCA3.1, OsERD4, OsDDP7, DDP7, OsDDP7.1, OsDDP7.2,OsOSCA1.4 , OsIOSCA1.4, OsDDP8, DDP8, OsDDP8.1, OsDDP8.2,OsOSCA1.2, OsIOSCA1.2, OsDDP6, DDP6, OsDDP6.1, OsDDP6.2,OsOSCA2.2, OsIOSCA2.2, OsDDP3, DDP3, OsDDP3.1, OsDDP3.2,OsEnS-22, OsOSCA2.5, OsIOSCA2.5, OsDDP2, DDP2, OsDDP2.1, OsDDP2.2, OsERD, ERD,OsOSCA4.1, OsIOSCA4.1
41593	0	Zang,L.-L., Zou,X.-H., Zhang,F.-M., Yang,Z. and Ge,S.	Phylogeny and species delimitation of the C-genome diploid species in Oryza	J Syst Evol			2012		
41594	0	Zhao,D.-S., Zhang,C.-Q., Gu,M.-H. and Liu,Q.-Q.	Genetic and Expression Anaylses of Ef7-1, a Novel Ef7 Allele, in Rice	Zuo Wu Xue Bao	39(10)	1799-1805	2013	HD3B,PHYB	Hd17, EF7, Ef7, OsELF3-1, ELF3-1, OsELF3, ELF3, ELF3_chr.6, OsELF3.1, ELF3.1, OsELF3a, ELF3a,phyB, PHYB1, OsPHYB, OsphyB, OsYHB, YHB, OsPHYB/OsYHB
41595	25765449	Zhang F., Li-Yu Huang, Zhang F., Ali J., Cruz C., Da-Long Zhuo, Zheng-Lin Du, Zhi-Kang Li, Yong-Li Zhou	Comparative transcriptome profiling of a rice line carrying Xa39 and its parents triggered by Xanthomonas oryzae pv. oryzae provides novel insights into the broad-spectrum hypersensitive response.	BMC Genomics	16(1)	111	2015	XA39	Xa39, OsRGA5-L2, RGA5-L2, OsRGA5L2, RGA5L2
41596	0	Zhang F., D.-L.. Zhuo, F. .Zhang, L.-Y. Huang, W.-S. Wang, J.-L. Xu, C.Vera Cruz, Z.-K. Li, Y.-L. Zhou.	Xa39, a novel dominant gene conferring broad-spectrum resistance to Xanthomonas oryzae pv. oryzae in rice	Plant Pathol.			2014	XA39	Xa39, OsRGA5-L2, RGA5-L2, OsRGA5L2, RGA5L2
41597	25587002	Zhao D., Ferguson A., Jiang N.	Transposition of a Rice Mutator-Like Element in the Yeast Saccharomyces cerevisiae.	Plant Cell			2015	_,_,_,_,_,_	,,,,Os3378-Z,
41598	25605935	Edwards J., Johnson C., Santos-Medell?n C., Lurie E., Podishetty N.K., Bhatnagar S., Eisen J.A., Sundaresan V.	Structure, variation, and assembly of the root-associated microbiomes of rice.	Proc. Natl. Acad. Sci. U.S.A.	112(8)	E911-20	2015		
41599	25447912	Yang S.Y., Hao D.L., Song Z.Z., Yang G.Z., Wang L., Su Y.H.	RNA-Seq analysis of differentially expressed genes in rice under varied nitrogen supplies.	Gene	555(2)	305-17	2015		
41600	25445270	Nigam D., Kumar S., Mishra D.C., Rai A., Smita S., Saha A.	Synergistic regulatory networks mediated by microRNAs and transcription factors under drought, heat and salt stresses in Oryza Sativa spp.	Gene	555(2)	127-39	2015		
41601	25445269	Golestan Hashemi FS., Rafii M.Y., Ismail M.R., Mohamed M.T., Rahim H.A., Latif M.A., Aslani F.	The genetic and molecular origin of natural variation for the fragrance trait in an elite Malaysian aromatic rice through quantitative trait loci mapping using SSR and gene-based markers.	Gene	555(2)	101-7	2015		
41602	25447922	Xu J., Liu C., Li M., Hu J., Zhu L., Zeng D., Yang Y., Peng Y., Ruan B., Guo L., Li H.	A rice DEAD-box RNA helicase protein, OsRH17, suppresses 16S ribosomal RNA maturation in Escherichia coli.	Gene	555(2)	318-28	2015	_,_,RH58,_,_,_,_,_,_,_,EIF4A1,_,_,_,_,TOGR1,_,_,_,EIF4A2,NRFG6,RH22,AIP2,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,NRFG4,_,_,_,_,_,_,_,_,_,PRP5,AIP1,NRFG5,_,_,_,_,_	BIP115, OsRH18,OsRH41,OsRH58,OsRH14, p68, OsDB10, DB10,OsRH40, DRH1,OsRH57,OsRH48,OsRH52C,OsRH45,OsRH47A,eIF-4a, EIF4A, OseIF4A, eIF4A1, elF-4A, eIF4A-1, OsRH4,OsRH26,OsRH47B,OsRH1,OsRH38,OsTOGR1, DDX47, OsDDX47, OsRH10, RH10,OsRH2, RH2, eIF4A-3,OsRH34, RH34,OsRH36,eIF-4a, EIF4A, OseIF4A, eIF4A2, eIF4A-3, OsRH23,OsNRFG6, SDRLK-38, OsSDRLK-38, SDRLK38, OsSDRLK38,OsRH22,AIP2, Os AIP2, OsAIP2, OsRH15,OsRH39,OsRH35B,OsRH35A,OsRH52B, RH52B, RBP-100 ,OsRH28,OsRH27,OsRH21,OsRH19, eIF4A-2,OsRH9,OsRH13,OsRH8,OsRH7,OsRH12,OsRH6,OsRH17,OsRH52A, RH52A, OsNRFG4,OsRH3,OsRH16,OsRH20,OsRH24,OsRH32,OsRH53,mog-4,OS-RNAH, OsRH29,OsRH25, RH25,OsPRP5, OsRH42, RH42,AIP1, Os AIP1, OsAIP1, OsRH56, OsBAT1, UAP56, OsUAP56, OsBAT1/UAP56,OsRH51, RH51, OsNRFG5,OsRH5,OsRH50, OsBIRH1,OsRH30,OsRH37,OsABP, OsRH31
41603	25555239	Zhou X., Li L., Xiang J., Gao G., Xu F., Liu A., Zhang X., Peng Y., Chen X., Wan X.	OsGL1-3 is Involved in Cuticular Wax Biosynthesis and Tolerance to Water Deficit in Rice.	PLoS ONE	10(1)	e116676	2015	CER7,CER4,CER10,PAS2,LACS9,_,_,KCR1	OsCER7,OsCER4, OsFAR3, FAR3,OsCER10,OsPAS2,OsLACS1, LACS1, OsLACS9,FATB1, OsFATB1,OsGL1-3,OsKCR1, OsWSL3, WSL3
41604	25563494	Zhang L., Li Q., Dong H., He Q., Liang L., Tan C., Han Z., Yao W., Li G., Zhao H., Xie W., Xing Y.	Three CCT domain-containing genes were identified to regulate heading date by candidate gene-based association mapping and transformation in rice.	Sci Rep	5	7663	2015	HD3A,_,GHD7,GATA19,PRR95,_,RFT1,CCT25,CCT36,GATA18 ,DHD4,PRR59,CCT37,CCT17,CMF14,CMF3,BBX12,CO3,EF1,BBX8,CMF11,NRR,BBX20,DTH2,BBX25,CCT10,BBX9,PRR73,CCT1,CCT39,BBX17,BBX3,BBX15,BBX7,BBX28,BBX10,TOC1,COL15,HD2,GATA20,BBX23,COL4,SE1,GATA17	Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,OsCCT34, OsCMF10, CO9,Ghd2, Ghd7, OsGhd7, OsCCT26, OsCMF8, OsI, Ghd7/Hd4, Hd4, EH7-1/Hd4, Ghd7-0a, EH7-1, EH7/Ghd7, EH7, OsEH7, GLW7.1, OsGLW7.1,OsTIFY1b, TIFY1B, OsCCT15, CCT15, OsGATA19, OsGATA19a, OsGATA19b,OsPRR95, Os-PRR95, Prr2, OsPRR2, OsCCT33,OsCCT40,FT-L 3, OsFTL3, FTL3, FT-L3, RFT, OsRFT1,OsCCT25, OsCMF7, CMF7,OsCCT36, OsCMF12, CMF12, OsRpp30, Rpp30,OsTIFY1A, TIFY1A, OsCCT13, OsGATA18, OsGATA18a, OsGATA18b,OsCCT02, OsCCT2, OsCMF2, OsSTA46, OsDHD4, CCT02, CCT2, CMF2, STA46,OsPRR59, Os-PRR59, Prr5, OsPRR5, OsCCT38, CCT38,OsCCT37,OsCCT17, OsCMF5, CMF5,OsCCT41, CCT41, OsCMF14,OsCCT03, CCT03, OsCCT3, CCT3, OsCMF3,OsBBX12, OsC, OsCCT16, CCT16,OsB, OsCO3, OsBBX27, OsCO3/OsB, OsCCT31, CO3, BBX27, CCT31,Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,OsBBX8, OsK, OsCCT09, OsGhd2, OsK/Ghd2, CCT09, Ghd2,OsCCT35, CCT35, OsCMF11, OsH, DLN240, OsDLN240,OsNRR, NRRa, NRRb, OsCCT18, OsCMF6,  CCT18, CMF6, CRCT, OsCRCT,OsBBX20, OsE, OsCCT23, CCT23,OsBBX19, BBX19, OsM, OsDTH2, qDTH-2, OsCCT22, CCT22,OsBBX25, OsG, OsCCT29, CCT29,OsCCT10, OsCMF4, CMF4, DLN75, OsDLN75,OsP, OsBBX9, OsCCT12, CCT12,OsPRR73, Os-PRR73, Prr3, OsPRR3, OsRRA20, OsCCT11, CCT11,OsCCT01, CCT01, OsCMF1,OsCCT39, OsCMF13, CMF13, OsRpp30-L, Rpp30-L,OsBBX17, OsL, OsCCT20, CCT20, OsCOL16, COL16,OsBBX3, OsF, OsCCT05, CCT05,OsBBX15, OsCCT19, OsS, OsSTA162, CCT19, STA162,OsN, OsBBX7, OsCCT08, OsCCT8, OsDTH2, CCT08, CCT8, DTH2,OsBBX28, OsCCT32, OsQ, CCT32,OsBBX10, OsJ, OsCCT14, OsCOL10, COL10, OsCOL9, CCT14, COL9,OsTOC1, OsPRR1, Os-PRR1, PRR1, OsRRA21, OsCCT07,OsBBX26, BBX26, OsO, OsCCT30, CCT30, OsCOL15, OsCOL15/OsBBX26, Hd1-3,Hd2(t), Hd2, qHD2(t), OsPRR37, Os-PRR37, PRR37, Prr4, OsPRR4, DTH7, Os DTH7, OsCCT28, CCT28, Ghd7.1, PRR37/Hd2, EH7-2, EH7-2/Hd2, Hd2/PRR37, PRR37-1a, PRR37-1b, PRR37-1c, PRR37-2a, PRR37- 2, HD7.2,OsTIFY2b, TIFY2B, OsCCT24, CCT24, OsGATA20,OsBBX23, OsCCT27, CCT27, OsR, OsCOL13, COL13,OsCOL4, OsD, OsBBX5, OsCOL4/OsD, OsCCT06, BBX5, CCT06,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, OsHd1,  Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,OsTIFY2a, TIFY2a, OsCCT04, OsCCT4, CCT04, CCT4, OsGATA17, OsGATA17a, OsGATA17b
41605	25573482	Yoshitake Y., Yokoo T., Saito H., Tsukiyama T., Quan X., Zikihara K., Katsura H., Tokutomi S., Aboshi T., Mori N., Inoue H., Nishida H., Kohchi T., Teraishi M., Okumoto Y., Tanisaka T.	The effects of phytochrome-mediated light signals on the developmental acquisition of photoperiod sensitivity in rice.	Sci Rep	5	7709	2015	GHD7,SE13,EHD2/RID1,SE1	Ghd2, Ghd7, OsGhd7, OsCCT26, OsCMF8, OsI, Ghd7/Hd4, Hd4, EH7-1/Hd4, Ghd7-0a, EH7-1, EH7/Ghd7, EH7, OsEH7, GLW7.1, OsGLW7.1,Se13, OsHY2, OsGUN3, GUN3, PS13,Ehd2, RID1, OsID1, ID1, OsId1, OsID, Ehd2/RID1/OsId1, RID1/OsID1/Ehd2,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, OsHd1,  Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21
41606	25582452	Yu H., Murchie E.H., Gonz?lez-Carranza ZH., Pyke K.A., Roberts J.A.	Decreased photosynthesis in the ERECT PANICLE 3 (EP3) mutant of rice is associated with reduced stomatal conductance and attenuated guard cell development.	J. Exp. Bot.			2015	EP3,FBOX33	EP3/LP, LP, OsLP, OsFbox076, OsFbox76, Os_F0106, OsEP3,  OsFBK5, FBK5,OsFbox033, OsFbox33, Fbox33, Os_F0114, OsFBK1, FBK1 ,  OsFBK1, FBK1
41607	25604991	Chen Z., Gao X., Zhang J.	Alteration of osa-miR156e expression affects rice plant architecture and strigolactones (SLs) pathway.	Plant Cell Rep.	34(5)	767-81	2015	D27,D3,MIR156E,D14	d27(d t), dt, dwf23, d27, OsD27,d3, dwf3, D3/OsMAX2, Os_F0760, SOL1, OsORE9, ORE9, MAX2, OsRFPH2-10, RFPH2-10, OsD3,  OsFBL27, FBL27,miR156e, OsmiR156e, osmiR156e, osa-miR156e, osa-MIR156e,d14(d10), dwf13, d10, d14, D88, HTD2, OsHTD2, OsD14, qPPB3, D88/D14, HTD4
41608	25641188	Wang D., Liu H., Li S., Zhai G., Shao J., Tao Y.	Characterization and molecular cloning of a Serine hydroxymethyltransferase 1 (osshm1) in rice.	J Integr Plant Biol			2015	CADT1,SHMT1,SHMT5,SHMT2,SHMT3	OsSHM4, SHM4, OsSHMT4, SHMT4, OsSHTM1, SHTM1, OsCADT1, FLO20, OsFLO20,OsSHM1, SHM1, OsSHMT1, CDM1, OsCDM1, OsSHTM3, SHTM3, OsSHMT, SHMT,OsSHM5, SHM5, OsSHMT5, OsSHTM2, SHTM2,OsSHM2, SHM2, OsSHMT2,OsSHTM4, SHTM4,OsSHM3, SHM3, OsSHMT3, OsSHTM5, SHTM5
41609	25634963	Ohashi M., Ishiyama K., Kojima S., Konishi N., Nakano K., Kanno K., Hayakawa T., Yamaya T.	Asparagine Synthetase1, but not Asparagine Synthetase2, is Responsible for the Biosynthesis of Asparagine Following the Supply of Ammonium to Rice Roots.	Plant Cell Physiol.	56(4)	769-78	2015	ASN1,ASN	OsASN1, OsAS1, AS1,OsASN2, OsAS, OsAS2, AS2
41610	25600999	Park Y.C., Kim J.J., Kim D.S., Jang C.S.	Rice RING E3 ligase may negatively regulate gamma-ray response to mediate the degradation of photosynthesis-related proteins.	Planta	241(5)	1119-29	2015	RFPHC-1,_,_,_,_,4NPP1,_,_,RFPV6,_,_,_,RBCS,_,_,_,_,_,RFPV1,MSRB5,RFPH2-15	OsRFPHC-1, OsNLA2, NLA2, OsNLA2.1, OsNLA2.2, OsRING348, RING348,OsRFPH2-5, DLN133, OsDLN133,  OsRING36, RING36,OsRFPH2-7,  OsRING296, RING296,OsRFPH2-13,OsRFPH2-2,  OsRING323, RING323,Os4NPP1, OsPGLP1, PGLP1,OsRFPH2-16, OsGIRP1,  OsRING32, RING32,OsPPT1, PPT1,OsRFPV-6,  OsRFPv6, OsRING135, RING135,OsRFPH2-6,  OsRING47, RING47,OsRFPHC-16,  OsRING322, RING322,OsRFPH2-18,  OsRING175, RING175,rbcS, OsRbcS, RBCS-C, RbcS2, OsRBCS2, RbcS1, OsRbcS2, OsrbcS1,OsDNLZ1, DNLZ1,OsRFPHC-4,  OsRING205, RING205,OsRFPH2-3,  OsRING217, RING217,OsrbcL1, rbcL1,OsRFPHC-8,  OsRING114, RING114,OsRFPV-1,  OsRING102, RING102,OsMSR1, MSR1, OsMSRB5,OsRFPH2-15,  OsRING316, RING316, OsvWA6, vWA6
41611	25617720	Wang S., Sun Z., Wang H., Liu L., Lu F., Yang J., Zhang M., Zhang S., Guo Z., Bent A.F., Sun W.	Rice OsFLS2-Mediated Perception of Bacterial Flagellins Is Evaded by Xanthomonas oryzae pvs. oryzae and oryzicola.	Mol Plant			2015	FLS2	Os-FLS2, OsFLS2, OsCLV2f, CLV2f
41612	25625819	Katsuragi Y., Takai R., Furukawa T., Hirai H., Morimoto T., Katayama T., Murakami T., Che F.S.	CD2-1, the C-terminal region of flagellin, modulates the induction of immune responses in rice.	Mol. Plant Microbe Interact.			2015	ECK1,BHLH10,PR1-72,PR10A,CDPK9,_,WJUMK1,FLS2,PAL1,CHT1,WRKY70,PSBY	OsECK1,OsICE1, ICE1, OsbHLH010, bHLH010, OsMYL1, MYL1, bHLH116, OsMYC3, MYC3 ,OsPR1#072, OsPR1-72, PR1L, OsPR1L, OsPRB1, PRB1,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsCDPK9, OsCPK9, CPK9,,OsMPK20-4, MPK20-4, OsWJUMK, OsWJUMK1, WJUMK, MAPK8, OsMPK8, MPK8, OsMAPK20-4, MAPK20-4, OsMPKG1, MPKG1,Os-FLS2, OsFLS2, OsCLV2f, CLV2f,OsPAL, Pal1*, Pal1, PAL, Pal_1, PalI, PAL2, OsPAL01, PAL01, OSPAL, CP-1, GP-1, OsPAL1, PAL3, OsPAL3,Cht1*(Chi1), Ch16, Cht1, CHT-1, CH16, RC24, OsChia1a, OsChia1, Chi1, Cht1*, Chi-1, Cht-1, Cht1, RCC1, OsCht-1, PR3, OsPR3,OsWRKY70,PsbY, OsPSBY
41613	25682936	Hu J., Xiao C., Cheng M.X., Gao G.J., Zhang Q.L., He Y.Q.	A new finely mapped Oryza australiensis-derived QTL in rice confers resistance to brown planthopper.	Gene	561(1)	132-7	2015		
41614	25724637	Sun J., Miller J.B., Granqvist E., Wiley-Kalil A., Gobbato E., Maillet F., Cottaz S., Samain E., Venkateshwaran M., Fort S., Morris R.J., An? JM., D?nari? J., Oldroyd G.E.	Activation of symbiosis signaling by arbuscular mycorrhizal fungi in legumes and rice.	Plant Cell	27(3)	823-38	2015		
41615	25724641	Chen J., Wang Y., Wang F., Yang J., Gao M., Li C., Liu Y., Liu Y., Yamaji N., Ma J.F., Paz-Ares J., Nussaume L., Zhang S., Yi K., Wu Z., Wu P.	The rice CK2 kinase regulates trafficking of phosphate transporters in response to phosphate levels.	Plant Cell	27(3)	711-23	2015	PHF1,PT2, CK2ALPHA3,PT8,CK2BETA3	OsPHF1, OsWD40-137, OsSEC12,OsPT2, PTH1-2, OsPht1;2, PHT1;2, OsPHT1;2,OsCK2alpha3, CK2alpha3, OsCKA2-3, CKA2-3,OsPT8, PHT1-8, OsPht1;8, Pht1;8, PHT1;8, OsPHT1;8,CK2beta3, OsCK2beta3
41616	25713090	van der Heijden MG., Schlaeppi K.	Root surface as a frontier for plant microbiome research.	Proc. Natl. Acad. Sci. U.S.A.	112(8)	2299-300	2015		
41617	25688880	Pooja S., Sweta K., Mohanapriya A., Sudandiradoss C., Siva R., Gothandam K.M., Babu S.	Homotypic clustering of OsMYB4 binding site motifs in promoters of the rice genome and cellular-level implications on sheath blight disease resistance.	Gene	561(2)	209-18	2015	_,_,_,WRKY102,_,_	,,OsSTA258,OsWRKY102,prx75,OsMYB4, Osmyb4, OsMyb4, MYB4, OsMYB55, MYB55, OsMyb8, MYB8, OsMYB13b, MYB13b, OsMYB15, MYB15, Os2R_MYB46, 2R_MYB46
41618	25675495	Tamaki S., Tsuji H., Matsumoto A., Fujita A., Shimatani Z., Terada R., Sakamoto T., Kurata T., Shimamoto K.	FT-like proteins induce transposon silencing in the shoot apex during floral induction in rice.	Proc. Natl. Acad. Sci. U.S.A.	112(8)	E901-10	2015	HD3A,RAP1A,GF14B,BZIP77,RFT1	Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,OsMADS15, FDRMADS3, RMADS215, MADS15, DEP,GF14b, OsGF14b, 14-3-3b,OsbZIP77, OsFD1, FD1,FT-L 3, OsFTL3, FTL3, FT-L3, RFT, OsRFT1
41619	25659749	Quain M.D., Makgopa M.E., Cooper J.W., Kunert K.J., Foyer C.H.	Ectopic phytocystatin expression increases nodule numbers and influences the responses of soybean (Glycine max) to nitrogen deficiency.	Phytochemistry	112	179-87	2015	OC1	Oc1*, Oc1, OC-I, SPOC-I, OsCP1, Oc, OCI, OsCYS1, OsPR6b, PR6b
41620	25599895	Chen G., Feng H., Hu Q., Qu H., Chen A., Yu L., Xu G.	Improving rice tolerance to potassium deficiency by enhancing OsHAK16p:WOX11-controlled root development.	Plant Biotechnol. J.			2015	HAK16,WOX11	OsHAK16,OsWOX11, Os WOX11, OsWOX12A
41621	25595546	Fukayama H., Koga A., Hatanaka T., Misoo S.	Small subunit of a cold-resistant plant, timothy, does not significantly alter the catalytic properties of Rubisco in transgenic rice.	Photosyn. Res.	124(1)	57-65	2015		
41622	25636203	Wu T.M., Lin W.R., Kao C.H., Hong C.Y.	Gene knockout of glutathione reductase 3 results in increased sensitivity to salt stress in rice.	Plant Mol. Biol.	87(6)	555-64	2015	GR3	OsGR3
41623	25607719	Domiciano G., Cacique I., Freitas C., Filippi M., DaMatta F.M., Vale F., Rodrigues F.	Alterations in gas exchange and oxidative metabolism in rice leaves infected by Pyricularia oryzae are attenuated by silicon.	Phytopathology			2015		
41624	25664791	Huang D., Zhang Y., Zhao Y., Liu J., Peng Y.L.	Expression, purification, crystallization and preliminary X-ray diffraction analysis of the effector-interaction domain of the resistance protein RGA5-A from Oryza sativa L. japonica.	Acta Crystallogr F Struct Biol Commun	71(Pt 2)	171-4	2015	RGA5	Os11gRGA5, OsRGA5, RGA5-A, RGA5-B, Pi5, Pias-2
41625	25848690	Sun Y., Ning T., Liu Z., Pang J., Jiang D., Guo Z., Song G., Yang D.	The OsSec18 complex interacts with P0(P1-P2)2 to regulate vacuolar morphology in rice endosperm cell.	BMC Plant Biol.	15	55	2015	P0A,_	YK704, Os60sP0, OsP0A,OsSec18, Sec18, OsNSF, NSF
41626	25462965	Manimaran P., Mangrauthia S.K., Sundaram R.M., Balachandran S.M.	Constitutive expression and silencing of a novel seed specific calcium dependent protein kinase gene in rice reveals its role in grain filling.	J. Plant Physiol.	174	41-8	2015	CDPK31	OsCDPK31, OsCPK31, CPK31
41627	25691887	Wu Z., Ji J., Tang D., Wang H., Shen Y., Shi W., Li Y., Tan X., Cheng Z., Luo Q.	OsSDS is essential for DSB formation in rice meiosis.	Front Plant Sci	6	21	2015	ZIP4,RMC1,SDS,MSH5	OsZIP4, SPO22, OsSPO22,MER3, mer3, OsMER3, RCK, OsRCK, Os-MER3,OsSDS, Orysa;SDS,OsMSH5
41628	25765586	Ling S., Chen C., Wang Y., Sun X., Lu Z., Ouyang Y., Yao J.	The mature anther-preferentially expressed genes are associated with pollen fertility, pollen germination and anther dehiscence in rice.	BMC Genomics	16	101	2015	NUDX12,_,PLDbeta2,PUB13,_,_,_,_,_,_,WSL4,_,GATL4,_,_,_,_,_,_,_,DGK6,_,_,CHX1,_,_,_,_,_,XIO1,_,_,_,2R_MYB61,_,_,_,RLCK189,_,_,_,PLDdelta1,_,ESD1,C2DP14,_,CBSDUF3,CNGC16,CIPK05,_,_,PRD1,_,BMY7,B3DNA,PGLP3,ODD21,_,_,_,_,_,_,_,_,_,_,_,RFPHC14,_,_,_,_,_,_,_,_,_,_,_,ANTH11,APT1,_,CHX4,_,_,DHHC26,LFL1,_,CAX4,_,BAMY1,_,_,_,_,_,_,_,_,_,LPR5,_,MADS27,AGC26,_,PPPCB,OSCA1.3,_,_,NHX6,_,C2DP65,_,_,ARID2,PMEI21,_,_,_,PDC3,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,JRL21,NAC136,_,_,_,_,_,_,_,ABCG16,_,_,BZIP16,_,TIFY8,_,_,_,BZIP2,_,_,_,_,_,_,AKT3,ALDH2A,_,_,_,_,C2DP46,_,_,ABCG28,CHX3,_,_,PERK7,PT20,_,IQM6,_,_,_,GSL5,_,_,_,FBOX6,_,_,DHD4,_,_,_,_,_,_,_,_,AMY4A,MDR1,PME32,CNGC6,HAK6,_,SIP1;2,_,_,_,_,_,_,_,AGPL4,_,MC3,IQM2,BBX15,_,_,NAC10,CML3,_,_,_,_,_,_,_,_,_,_,_,_,_,_,ANTH2,_,_,_,_,_,_,GAUT7,_,XTH8,_,_,_,_,_,RKD10,HSP16.9B,_,_,_,_,_,_,_,THI37,_,_,_,_,_,_,_,ROPGEF2,TIFY5,_,_,_,FYVE1,_,_,CNGC17,_,RLCK342,HDA701,_,_,_,_,_,_,_,_,_,_,_,_	OsNUDX12, OsSTA61,OsSTA219,OsPLDbeta2, OsSTA86, OsC2DP27, C2DP27,OsPUB13, OsSTA182,  OsPUB13, PUB13,OsSTA236,OsSTA126,OsSTA165,OsSTA180,OsSTA93,OsSTA39,OsSTA65, STA65,OsSTA205,OsSTA200, OsGATL4,OsSTA173,OsSTA256,OsSTA268,OsSTA259,OsSTA266,OsSTA263,OsSTA257,OsSTA208, OsDGK6,OsFbox619, Os_F0190, OsSTA265,  OsFBDUF57, FBDUF57,OsSTA244,  OsBTB6, BTB6,OsSTA85, STA85, OsCHX01, CHX01, OsCHX1,OsSTA198, STA198, OsFH11, FH11,Orysa;CKL1, OsSTA287,OsSTA286,OsFbox095, OsFbox95, Os_F0274, OsSTA64,  OsFBX52, FBX52,OsSTA124,OsSTA221, Xio1, OsXio1,OsSTA22,OsSTA164,OsSTA239,OsSTA160, Os2R_MYB61,OsSTA250,OsSTA152,OsWD40-48, OsSTA70,OsRLCK189, OsSTA156,OsSTA240, OsMATE39, MATE39,OsSTA141,OsSTA114,OsPLDdelta1, OsPLDdelta, OsSTA233, OsC2DP77, C2DP77,OsSTA41, STA41,OsOFP31, OsOFP26, OFP31, OFP26, OsSTA245, Os ESD1,OsSTA54, OsC2DP14,OsLOL1, OsSTA289, OsLSD1,OsCBSDUF3, OsSTA88,OsCNGC16, OsCNGC8, CNGC8, OsSTA273,OsCIPK05, CIPK5, OsCIPK5, OsSTA7, OsSnRK3.2, SnRK3.2,OsSTA115,OsSTA278,OsSTA121, STA121, OsPRD1,OsSTA178, STA178,OsSTA201, OsBmy7, Bmy7,OsSTA105, OsB3DNA,OsSTA280, OsPGLP3,OsSTA135, STA135, OsODD21, 2-ODD21, Os2-ODD21, Os2ODD21, M2H, OsM2H, OsF3H5, F3H5,OsSTA157,OsSTA285,OsSTA56,OsSTA163,OsSTA249,OsSTA204,OsSTA220,OsSTA243,OsSTA53,OsSTA231,OsSTA222,OsRFPHC-14, RFPHC-14, OsSTA9, RIP3, OsRIP3,  OsRING79, RING79,OsSTA155,OsUGlcAE5, UGlcAE5, OsSTA172,OsSTA13,OsSTA272,OsSTA267,OsSTA112,OsSTA50,OsSTA69,OsSTA109,OsSTA174, RHS10, OsPERK6, PERK6,OsSTA4, OsRhmbd1, RHMBD1,OsSTA176, OsANTH11,OsSTA99, OsAPT1,OsSTA83, DLN72, OsDLN72,OsSTA291, OsCHX04, CHX04, OsCHX4,OsSTA48,OsETOL1, OsSTA97, ETOL1, STA97,  OsBTBT1, BTBT1,OsSTA261, OsDHHC26,OsLFL1, OsSTA29, STA29,OsSTA150,CAX2, OsCAX2, OsCAX4, OsSTA47, OsNCX3, NCX3,OsSTA80,OsSTA246, STA246, OsBamy1, Bamy1, BAM2, OsBAM2, OsBmy9, Bmy9, BMY5, OsBMY5,OsSTA96,OsSTA55,OsSTA227,OsSTA166,OsSTA175,OsSTA195,OsSTA143, STA143,OsSTA247,OsSTA177,OsSTA2, STA2, OsLPR5,OsSTA104,OsMADS27, MADS-27a, OsSTA66, OsMADS27a,OsSTA290, OsAGC26,OsSTA223, STA223,Osppc-b, OsSTA1, ppc-b, STA1, BTPC, OsBTPC,OsSTA149, OsOSCA1.3, OsIOSCA1.3, OsDDP5, DDP5, OsDDP5.1,OsSTA229,OsSTA133,  OsMBTB8, MBTB8,OsSTA230, OsNHX6,OsSTA35,OsSTA196, OsC2DP65,OsSTA288,OsSTA254, STA254 OsSEC3B, SEC3B ,OsSTA71, OsARID,OsSTA139, OsPMEI21,OsSTA40,OsSTA68,OsSTA63,pdc3*, pdc3, OsPDC3, OsSTA202,OsSTA43,OsSTA59,OsSTA44,OsSTA52,OsSTA49,OsSTA23,OsSTA36,OsSTA32,OsSTA185,OsSTA24,OsSTA16,OsSTA274,OsATL17, OsSTA19,OsSTA189,OsWD40-196, OsSTA276,Orysa;CKL8, OsSTA277,OsSTA260, OsJRL21,ONAC136, OsSTA279,OsPFA-DSP4, OsSTA281,OsFbox023, OsFbox23, Os_F0211, OsSTA20,  OsFBD3, FBD3,OsSTA90,OsSTA171,OsSTA167,OsFbox542, Os_F0480, OsSTA237,  OsFBX378, FBX378,OsWD40-185, OsSTA253,OsABCG16, OsABCG16_1, OsABCG16_2, OsSTA183,OsDjB9, OsSTA211,OsATL16, OsSTA21,OsbZIP16, OsSTA51,OsSTA275,OsJAZ12, OsTIFY8, OsSTA75,OsSTA127, STA127,OsPHS1b, OsPP4, OsSTA14,OsSTA145, STA145,OsbZIP02, OsbZIP2, OsSTA8,Vatp, OsSTA154,OsSTA144, STA144,OsSTA194,OsSTA158, STA158,OsSTA248,OsSTA225,OsSTA191, OsAKT3,OsALDH2a, ALDH2a, Aldh2a, OsSTA73, OsALDH2B5, ALDH2B5  ,OsSTA87,OsSTA241,OsSTA147, STA147,OsSTA137,OsSTA148, OsC2DP46,OsSTA190,OsSTA138,OsABCG28, OsSTA255,OsSTA234, STA234, OsCHX03, CHX03, OsCHX3,OsSTA197,OsSTA203,OsSTA186, OsPERK7,OsSTA235, OsPT20,OsGRL10, GRL10, OsSTA146, STA146,OsSTA242, OsIQM6,OsSTA252,OsSTA82, STA82, OsPOP6, POP6,OsSTA140,OsGSL5, OsSTA170, CalS5, OsCalS5,OsSTA262,OsSTA181, STA181, OsPMT16, PMT16,OsSTA179,OsFbox006, OsFbox6, Os_F0083, OsFBX5, OsSTA12,  OsFBX5, FBX5,OsNek3, OsSTA192,OsWD40-183, OsSTA251,OsCCT02, OsCCT2, OsCMF2, OsSTA46, OsDHD4, CCT02, CCT2, CMF2, STA46,OsSTA5,  OsRING37, RING37,OsSTA6,OsSTA45,OsSTA57,OsSTA60,OsSTA62,OsSTA67,OsSTA92,OsSTA30, Amy4A, OsAMY4A,OsABCB15, ABCB15, OsPGP15, OsMDR1, OsMDR2, MDR2, OsSTA125,OsPME32, OsSTA270,OsCNGC6, OsCNGC4, CNGC4, OsSTA107,OsHAK6, OsSTA42,OsSTA123,OsSIP1;2, OsSTA98, OsSIP2, SIP2,OsSTA214,OsSTA81,OsSTA84,OsSTA122,OsSTA264, STA264, Duf6, qSCT11 ,OsSTA169,OsSTA89, STA89, OsDUF810.1, DUF810.1 ,OsAGPL4, APL4, OsAPL4, OsSTA193,OsSTA118,OsMC3, OsSTA102,OsSTA91, OsIQM2,OsBBX15, OsCCT19, OsS, OsSTA162, CCT19, STA162,OsSTA11, OsRFP,  OsRING98, RING98,OsSTA238,ONAC010, ONAC10, OsSTA199, OsNAC3, NAC3,OsCML3, OsSTA271, OsCML3m, OsCML3s,OsSTA142,OsSTA168,OsSTA131,OsSTA153,OsSTA151,OsSTA161,OsSTA132,OsSTA136,OsSTA134,OsSTA130,OsSTA210,OsSTA283,OsSTA108,OsSTA111,OsSTA37, OsANTH2,OsSTA218,OsFbox443, Os_F0084, OsSTA212,  OsFBX290, FBX290,OsTCP10, OsSTA77, TCP10, STA77,OsSTA113,OsSTA101,OsSTA128,OsSTA216, OsGAUT7,OsSTA284,OsXTH8, OsSTA207,OsSTA228,OsSTA38,OsSTA100,OsSTA129,OsSTA94,OsSTA58, STA58, OsRKD10,Oshsp16.9B, OsHsp16.9B, HSP16.9B, OsHsp17.0, OsHSP16.9B-CI, OsHSP17.0, Hsp17.0, OsSHSP2, OsSTA3,OsSTA209,OsSTA187,OsSTA72,OsSTA215,OsSTA213,OsSTA226,OsSTA103,OsSTA110, OsTHION37, THION37, OsTHI37,OsSTA26,OsFH12, FH12, OsPP62, OsSTA117, PP62, STA117,OsSTA120,OsSTA119,OsSTA206,OsSTA17,OsSTA76,Os RopGEF2, OsRopGEF2, RopGEF2, OsSTA159, OsGEF29, GEF29,OsJAZ 2, OsJAZ2, JAZ2, OsTIFY5, OsSTA188, OsJAZ5, JAZ5,OsSTA74,OsSTA15,OsSTA10,OsSTA28, OsFYVE01, OsFYVE01, FYVE01,OsSTA224, STA224,OsSTA258,OsCNGC17, OsCNGC5, CNGC5, OsSTA282,OsSTA78,OsRLCK342, OsSTA269,OsSTA18, OsHDA701,OsSTA27,OsSTA31,OsSTA79,OsSTA116,OsSTA95,OsSTA217,OsSTA106, STA106,OsSTA34,OsSTA25,OsSTA232,OsSTA33,OsSTA184
41629	25667045	Fang H., Meng Q., Xu J., Tang H., Tang S., Zhang H., Huang J.	Knock-down of stress inducible OsSRFP1 encoding an E3 ubiquitin ligase with transcriptional activation activity confers abiotic stress tolerance through enhancing antioxidant protection in rice.	Plant Mol. Biol.	87(4-5)	441-58	2015	RFP1,SRFP1,_,RING158	OsRZFP34, OsRFP1, RZFP34, UCIP18, OsUCIP18,  OsRING160, RING160,OsSRFP1,  OsRING157, RING157, SDEL2, OsSDEL2,,  OsRING159, RING159,SDEL1, OsSDEL1, OsRING158
41630	25693492	Singh B.P., Jayaswal P.K., Singh B., Singh P.K., Kumar V., Mishra S., Singh N., Panda K., Singh N.K.	Natural allelic diversity in OsDREB1F gene in the Indian wild rice germplasm led to ascertain its association with drought tolerance.	Plant Cell Rep.			2015	DREB1F	OsERF#027, OsERF027, OsERF27, ERF27, AP2/EREBP#081, AP2/EREBP81, OsDREB1F
41631	25697101	Lu Z., Shao G., Xiong J., Jiao Y., Wang J., Liu G., Meng X., Liang Y., Xiong G., Wang Y., Li J.	MONOCULM 3, an ortholog of WUSCHEL in rice, is required for tiller bud formation.	J Genet Genomics	42(2)	71-8	2015	RR10,_,_,_,RR1,RR9,DLC1,TAB1	OsRR10, Rra2, OsRRA2, RR2,OsTPR3, TPR3,OsTPR2, TPR2,OsTPR1, TPR1,rr1, OsRR1, Rra9, OsRRA9,OsRR9, Rra1, OsRRA1, OsRR10, RR10,RR24, OsRR24, Rrb2, Orr4, OsRR17, RR17, OsRRB2, OsRR24/LEPTO1, OsLEPTO1, LEPTO1, OsDLC1,Os WUS, WUS, OsWOX1, WOX1, OsWUS, OsTAB, TAB1/WUS, MOC3, MOC3/OsWUS, SRT1, MOC3/TAB1/SRT1, DC1, OsDC1, DAP1, OsDAP1
41632	25687295	Sebastian A., Prasad M.N.	Operative photo assimilation associated proteome modulations are critical for iron-dependent cadmium tolerance in Oryza sativa L.	Protoplasma			2015	IRT1,IRT2,YSL18,YSL15	OsIRT1, ZIP10, OsZIP10, OsZIP12, ZIP12,OsIRT2, OsIRT1, OsZIP15, ZIP15,OsYSL18, OsYs2 ,OsYSL15, OsYs7
41633	25675970	Zheng M., Wang Y., Wang Y., Wang C., Ren Y., Lv J., Peng C., Wu T., Liu K., Zhao S., Liu X., Guo X., Jiang L., Terzaghi W., Wan J.	DEFORMED FLORAL ORGAN1 (dfo1) regulates floral organ identity by epigenetically repressing the expression of OsMADS58 in rice (Oryza sativa).	New Phytol.	206(4)	1476-90	2015	IEZ1,CCP1,MSI1,MADS58	OsiEZ1, OsSET1, SET1, iEZ1, OsEZ1/OsiEZ1, OsEZ1, EZ1, ez1, OsSET15, SDG718, DLN84, OsDLN84,DFO1, EMF1, OsDFO1, OsEMF1, OsCCP1,OsWD40-79, OsMSI1, WD40-79,  OsDWD1, DWD1,OsMADS58
41634	25676661	Ji H., Gheysen G., Ullah C., Verbeek R., Shang C., De Vleesschauwer D., H?fte M., Kyndt T.	The role of thionins in rice defence against root pathogens.	Mol. Plant Pathol.			2015	THI7,THI20,THI6,THI38,THI36,THI32,THI26,THI2,_,_,_,_,THI39,THI21,_,THI34,THI3,THI5,THI4,THI1,THI30,THI41,THI31,THI29,_,THI28	OsTHI7, OsTHION7, THION7,OsTHI20, OsTHION20, THION20,OsTHI6, Osthi6, thi6, OsTHION6, THION6,OsTHI38, OsTHION38, THION38,OsTHI36, OsTHION36, THION36,OsTHI32, OsTHION32, THION32,OsTHI26, OsTHION26, THION26,OsTHI1, THI1, Osthi2, thi2, OsTHION1, THION1,,,,,OsTHI39, OsTHION39, THION39,OsTHI21, OsTHION21, THION21,OsTHI3, THI3, Osthi1, thi1, OsTHION3, THION3,OsTHI34, OsTHION34, THION34,OsTHI2, THI2, Osthi3, thi3, OsTHION2, THION2,OsTHI5, Osthi5, OsTHION5, THION5, OsTHION4, THION4,Osthi4, thi4,OsTHI9, THI9, Osthi1, thi1, Osthi8, thi8, OsTHION9, THION9,OsTHI30, OsTHION30, THION30,OsTHI41, OsTHION41, THION41,OsTHI31, OsTHION31, THION31,OsTHI29, OsTHION29, THION29,OsTHI8, THI8, OsTHION8, THION8,OsTHI28, OsTHION28, THION28
41635	25702710	Zhang F., Sun Y., Pei W., Jain A., Sun R., Cao Y., Wu X., Jiang T., Zhang L., Fan X., Chen A., Sun S., Xu G.	Involvement of OsPht1;4 in phosphate acquisition, and mobilization facilitates embryo development in rice.	Plant J.			2015	PT8,INO1,_,PT1,PT4	OsPT8, PHT1-8, OsPht1;8, Pht1;8, PHT1;8, OsPHT1;8,OsINO1, MIPS, IPS, RINO1, OsINO1-1, OsRINO1, OsMIPS1, MIPS1,OsIPK1, IPK1,OsPT1, PHT1-1, OsPht1;1, Pht1;1, OsPHT1;1, PHT1;1,OsPT4, PHT1-4, OsPht1;4, PHT1-2, PHT1;4, OsPHT1;4
41636	25804812	Ma K., Zhang D., Liu Y., Ouyang Y., Li J., Hu C., Yao J.	Ectopic expression of EbFIE from apomictic Eulaliopsis binata in rice results in pleiotropic phenotypes likely due to interaction with OsCLF.	Plant Sci.	234	86-96	2015	FIE2,CLF,FIE1	OsFIE2, FIE, OsWD40-153,  OsDWD46, DWD46,OsSET24, SDG711, EZ1, OsCLF, OsSDG711,OsFIE1, OsWD40-154, OsEnS-116, OsFIE1/OsWD40-154, WD40-154 
41637	25677853	Liu Q., Shen G., Peng K., Huang Z., Tong J., Kabir M.H., Wang J., Zhang J., Qin G., Xiao L.	A T-DNA insertion mutant Osmtd1 was altered in architecture by upregulating MicroRNA156f in rice.	J Integr Plant Biol			2015	WFP,MTD1,MIR156F,LCRN1,SPL12	OsSPL14, SPL14, IPA1, WFP/IPA1, OsSPL14/WFP/IPA1, OsIPA1,  IPA1/OsSPL14,Osmtd1,miR156f, osmiR156f, OsmiR156f, osa-miR156f, osa-MIR156fosa-miR156f-3p osa-miR156f-5p,OsSPL3, SPL3, OsLCRN1,OsSPL12, DLN176, OsDLN176
41638	25647508	Cai S., Jiang G., Ye N., Chu Z., Xu X., Zhang J., Zhu G.	A key ABA catabolic gene, OsABA8ox3, is involved in drought stress resistance in rice.	PLoS ONE	10(2)	e0116646	2015	ABA8OX3	OsABA8OX3, OsABA8ox3, CYP707A7, OsCYP707A7, OsAba-ox3, OsABA8ox3, OsABA8'ox3, ABA8'ox3, OsABAX3, ABAX3, OsABA8'OH3, ABA8'OH3
41639	25717038	Izumi M., Hidema J., Wada S., Kondo E., Kurusu T., Kuchitsu K., Makino A., Ishida H.	Establishment of Monitoring Methods for Autophagy in Rice Reveals Autophagic Recycling of Chloroplasts and Root Plastids during Energy Limitation.	Plant Physiol.	167(4)	1307-20	2015	ATG8B,ATG8,ATG7,ATG8E,RBCS,ATG8C	OsATG8b, Atg8b,Atg8, OsAtg8, APG8, OsATG8a, Atg8a,OsATG7, Atg7,OsATG8e, OsATG8d, Atg8d,rbcS, OsRbcS, RBCS-C, RbcS2, OsRBCS2, RbcS1, OsRbcS2, OsrbcS1,OsATG8c
41640	25711711	Xu C., Liu Y., Li Y., Xu X., Xu C., Li X., Xiao J., Zhang Q.	Differential expression of GS5 regulates grain size.in rice.	J. Exp. Bot.	66(9)	2611-23	2015	GS5,SERL1,SCP32,SCP34,SERK1,SCP45,SERL5,SCP64,CPD3L,CPD1,TMS10,SCP44,SCP29,SCP40,SCP66,SCP57,SCP63,SCP59,SCP61,SCP51,SCP52,SCP38,SCP41,CPD2B,SCP36,SCP54,SCP25,SCP24,SCP11,SCP22,SCP18,SCP21,SCP19,CPD3,SCP9,MSBP2,SCP7,SCP4,SCP1,SCP56,SCP30,_,SCP49,SCP15,SCP48,SCP16,SCP13,SCP2,SCP14,SCP12,SCP3,SERL2,SERL8,SCP8,SCP5,SCP17,SCP20,SCP31,SCP37,SCP43,SCP53,SCP35,SCP42,SG2,SCP33,_,SCP27,SCP23,DOCS1,SCP47	OsSCP26, SCP26, OsGS5,OsSERL1, OsBAK1-8, BAK1-8,OsSCP32,OsSCP34,OsSERK1, OsSERK2, OsBiSERK1, SERK2, BiSERK1, OsSerk2, OsBAK1-2,OsSCP45, OsSCP46, SCP46,OsSERL5, OsBAK1-4, OsSERK1, BAK1-4, SERK1,OsSCP64,R-CPD3L, cbp31, OsSCP39, SCP39,cbp1, R-CPD1, CBP I, CBP1, OsSCP65, SCP65,OsSERK4, OsSERL9, OsSERK2, OsBAK1-5, OsTMS10, SERK4, SERL9, SERK2, BAK1-5, OsBAK1, BAK1,OsSCP44,OsSCP29,OsSCP40,OsSCP66,OsSCP57, OsSCP58, SCP58,OsSCP63,OsSCP59, OsSCP60, SCP60,OsSCP61, OsSCP62, SCP62,OsSCP51,OsSCP52,OsSCP38,OsSCP41,OsSCP10, SCP10,OsSCP36,OsSCP54, OsSCP55, SCP55,OsSCP25,OsSCP24,OsSCP11,OsSCP22,OsSCP18,OsSCP21,OsSCP19,cbp3, R-CPD3, OsSCP6, SCP6,OsSCP9,OsMSBP2, OsMSBP1, OsCYB5-13, CYB5-13,OsSCP7,OsSCP4,OsSCP1,OsSCP56,OsSCP30,OsBAK1-10,OsSCP49, OsSCP50, SCP50,OsSCP15,OsSCP48,OsSCP16,OsSCP13,OsSCP2, SCP3, OsSCP3,OsSCP14,OsSCP12,OsSCP3,OsSERL2, SERK1, OsBAK1-7, BAK1-7,OsSERL8, OsBAK1-6, BAK1-6, TMS10L,OsSCP8,OsSCP5,OsSCP17,OsSCP20,OsSCP31,OsSCP37,OsSCP43,OsSCP53,OsSCP35,OsSCP42,OsSERK1, SERK1, OsBAK1, BAK1, OsSERK1/OsBAK1, OsBISERK1, BISERK1, OsSerk1, OsBAK1-1, 08SG2/OsBAK1, 08SG2, OsSG2,OsSCP33,OsSERK3, OsSERL6, OsBI-SERK1, BI-SERK1, OsBAK1-3,OsEnS-75, OsSCP27, OsSCP28, SCP28,OsSCP23,OsSERL4, OsBAK1-9, Docs1, OsDOCS1,OsSCP47
41641	25757473	Matsuzaki J., Kawahara Y., Izawa T.	Punctual Transcriptional Regulation by the Rice Circadian Clock under Fluctuating Field Conditions.	Plant Cell	27(3)	633-48	2015	PRR95,ELF4A,GI,CRY1B,LHD3,HD3B,TOC1,_,HD2,SE1,FKF1,CCA1,ZTL2,PRR73,PHYA,MYB1R,PRR59,CRY1A,PCL1,PHYB,ELF4,TCP7,EPR1,ELF3.2,ELF4B	OsPRR95, Os-PRR95, Prr2, OsPRR2, OsCCT33,ELF4_chr.11, OsELF4a, ELF4a,OsGI, Gi, Os-GI,OsCRY1b, OsCRY2, CRY1b, CRY1, OsCCT1b, CCT1b,PHYC, OsPHYC, OsPHYCa, OsPHYCb, OsLHD3,Hd17, EF7, Ef7, OsELF3-1, ELF3-1, OsELF3, ELF3, ELF3_chr.6, OsELF3.1, ELF3.1, OsELF3a, ELF3a,OsTOC1, OsPRR1, Os-PRR1, PRR1, OsRRA21, OsCCT07,LHY, LHY-like_chr.4, OsMYBR1, MYBR1, OsMYB1R35, MYB1R35,Hd2(t), Hd2, qHD2(t), OsPRR37, Os-PRR37, PRR37, Prr4, OsPRR4, DTH7, Os DTH7, OsCCT28, CCT28, Ghd7.1, PRR37/Hd2, EH7-2, EH7-2/Hd2, Hd2/PRR37, PRR37-1a, PRR37-1b, PRR37-1c, PRR37-2a, PRR37- 2, HD7.2,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, OsHd1,  Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,OsFbox609, Os_F0370, OsFKF1,  OsFBO10, FBO10,OsCCA1, OsLHY, LHY, LHY-like_chr.8, COC1, DLN203, OsDLN203, LEM1, OsLEM1, Nhd1, OsNhd1,OsZTL2, OsFbox325, Os_F0374, ZTL1 ,  OsFBO9, FBO9,OsPRR73, Os-PRR73, Prr3, OsPRR3, OsRRA20, OsCCT11, CCT11,phyA, PHYA* (phyA), PHYA*, Phya, PHY18, phy 18, OsPHYA ,OsMyb1R, OsMYB1R, LHY-like_chr.2,OsPRR59, Os-PRR59, Prr5, OsPRR5, OsCCT38, CCT38,OsCRY1a, OsCRY1, CRY1a, CRY2, OsCCT1a, CCT1a,OsPCL1, OsLUX, LUX, OsLVP2, LVP2,phyB, PHYB1, OsPHYB, OsphyB, OsYHB, YHB, OsPHYB/OsYHB,ELF4_chr.8, OsELF4c, ELF4c,OsTCP7, CHE,OsEPR1, OsLHY, LHY,ELF3_chr.1, OsELF3.2, ELF3.2, OsELF3-2, ELF3-2, OsELF3b, ELF3b,ELF4_chr.3, OsELF4b, ELF4b
41642	25791495	Zhao R., Sun H., Zhao N., Jing X., Shen X., Chen S.	The Arabidopsis Ca(2+)-dependent protein kinase CPK27 is required for plant response to salt-stress.	Gene	563(2)	203-14	2015		
41643	25733849	Xie K., Minkenberg B., Yang Y.	Boosting CRISPR/Cas9 multiplex editing capability with the endogenous tRNA-processing system.	Proc. Natl. Acad. Sci. U.S.A.	112(11)	3570-5	2015		
41644	25769309	Li J., Han Y., Liu L., Chen Y., Du Y., Zhang J., Sun H., Zhao Q.	qRT9, a quantitative trait locus controlling root thickness and root length in upland rice.	J. Exp. Bot.	66(9)	2723-32	2015	 BHLH120	OsbHLH120, bHLH120
41645	25743039	Yamada N., Theerawitaya C., Kageyama H., Cha-Um S., Takabe T.	Expression of developmentally regulated plasma membrane polypeptide (DREPP2) in rice root tip and interaction with Ca(2+)/CaM complex and microtubule.	Protoplasma			2015	DREPP2,_	OsDREPP2,OsDREPP1, DREPP1, RS1
41646	25809382	Carbonell A., Fahlgren N., Mitchell S., Cox K.L., Mockler T.C., Carrington J.C.	Highly Specific Gene Silencing in a Monocot Species by Artificial MicroRNAs Derived From Chimeric MIRNA Precursors.	Plant J.			2015	MIR390	OsmiR390, miR390, osa-MIR390osa-miR390, osa-miR390-3p, osa-miR390-5p
41647	25617318	Wu H., Ye H., Yao R., Zhang T., Xiong L.	OsJAZ9 acts as a transcriptional regulator in jasmonate signaling and modulates salt stress tolerance in rice.	Plant Sci.	232	1-12	2015	BHLH1,HAK21,_,SKC1,HAK27,_,TIFY11A	OsbHLH1, bHLH1, OsbHLH062, bHLH062, bHLH62 ,OsHAK21,OsNINJA1, NINJA1, OsNINJA2, OsNINJA, NINJA,OsHKT8, HKT8, Os-HKT1;5, OsHKT1;5, HKT1;5, SKC1, qSKC-1(t), OsSKC1,OsHAK27,OsbHLH157, bHLH157,OsJAZ3, JAZ3, OsJAZ 9, OsJAZ9, Os-JAZ9, JAZ9, OsTIFY11a, OsJAZ6, JAZ6
41648	25852730	Hu B., Wang W., Deng K., Li H., Zhang Z., Zhang L., Chu C.	MicroRNA399 is involved in multiple nutrient starvation responses in rice.	Front Plant Sci	6	188	2015	NAS2,HAK25,MIR399J,NAS1,MIR399A,MIR399D,MIR399E,ACA6,CHX11,MIR399I,LTN1,MIR399F,MIR399K	OsNAS2, OsNAS1,OsHAK25,OsmiR399j, osa-miR399j, osa-MIR399j, Os-miR399j, miR399j,OsNAS1,OsmiR399a, osa-miR399a, osa-MIR399a, Os-miR399a, miR399a,OsmiR399d, osa-miR399d, osa-MIR399d, Os-miR399d, miR399d,OsmiR399e, osa-MIR399e,osACA6, OsACA1, OsACA6, OsPM1ATPaseII, ACA3,NaT, OsCHX11,OsmiR399i, osa-MIR399i, miR399i,LTN1, OsPHO2, PHO2.1, PHO2.2, PHO2, OsUBC35, UBC35,OsmiR399f, osa-miR399f, osa-MIR399f, Os-miR399f,OsmiR399k, osa-MIR399k
41649	25867332	Luan Z.H., Zhou D.W.	Screening of rice (Oryza sativa L.) OsPR1b-interacting factors and their roles in resisting bacterial blight.	Genet. Mol. Res.	14(1)	1868-74	2015	PR1B,PSBR3,_,_,LSK1	OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1, OsPR1a, PR1a,OsPsbR3, PsbR3,prx78, PRX78, OsPRX78,,OsLSK1, SDRLK-LSK1, OsSDRLK-LSK1
41650	25738428	Matsui H., Takahashi A., Hirochika H.	Rice immune regulator, OsPti1a, is specifically phosphorylated at the plasma membrane.	Plant Signal Behav	10(3)	e991569	2015	PDK1,RLCK178,OXI1	OsPdk1, Pdk1, OsAGC3, AGC3,OsPti1a, Pti1a, OsRLCK178,OsOxi1, OsAGC10, AGC10
41651	25788736	Deshpande G.M., Ramakrishna K., Chongloi G.L., Vijayraghavan U.	Functions for rice RFL in vegetative axillary meristem specification and outgrowth.	J. Exp. Bot.	66(9)	2773-84	2015	RFL,D10,CUC1,D3,FC1,LAX1,NAM,PIN10A,PIN1B,CUC3,MOC1	RFL, OSL, FL, APO2, APO2/RFL, SSC, SSC/RFL/APO2, OsRFL, OsFL, OsAPO2, OsSSC,d10(d15,d16), d16, d15, dwf9, d10, OsCCD8b, OsCCD8, CCD8, OsD10,ONAC039, ONAC39, NAC39, OsCUC1, DLN86, OsDLN86,d3, dwf3, D3/OsMAX2, Os_F0760, SOL1, OsORE9, ORE9, MAX2, OsRFPH2-10, RFPH2-10, OsD3,  OsFBL27, FBL27,fc1, OsTB1, tb1, OsTB1/FC1, Os TB1, TB1, OsFC1, MP3, OsMP3,lax, lax(lx), lx, OsbHLH123, bHLH123, OsLAX1, BOS1, OsBOS1,OsNAM, OMTN5, ONAC092, ONAC92, NAC92, CUC2, OsNAM/CUC2, DLN165, OsDLN165, OsCUC1, CUC1, OsNAM/ OMTN5, OsNAM1, NAM1,PIN3A, OsPIN3a, OsPIN3t, OsPIN10a, OsPIN3,PIN1A, OsPIN1A, OsPIN1a, REH1, OsPIN1, OsPIN1b, REH1/OsPIN1,OsCUC3, ONAC107, NAC107, DLN214, OsDLN214,moc1, OsMOC1, OsGRAS-33, OsGRAS33, GRAS-33, GRAS33, GNP6, OsGNP6
41652	25800365	Tamiru M., Undan J.R., Takagi H., Abe A., Yoshida K., Undan J.Q., Natsume S., Uemura A., Saitoh H., Matsumura H., Urasaki N., Yokota T., Terauchi R.	A cytochrome P450, OsDSS1, is involved in growth and drought stress responses in rice (Oryza sativa L.).	Plant Mol. Biol.	88(1-2)	85-99	2015	CYP96B6,CYP96B8,SD37,_,CYP96E1,CYP96B7,CYP96B10,CYP96B2,CYP96D2,CYP96D1,CYP96B9,CYP96B5	OsCYP96B6,OsCYP96B8,OsCYP96B4, CYP96B4, CYP96B4/SD37, OsDSS1, DSS1, CFL2, OsCFL2, CFL2/OsCYP96B4, BSHT1, OsBSHT1, BSHT1/OsCYP96B4, DDT1, OsDDT1,MAH1, OsMAH1, OsCYP96B3, CYP96B3,OsCYP96E1,OsCYP96B7,OsCYP96B10,OsCYP96B2,OsCYP96D2,OsCYP96D1,OsCYP96B9,OsCYP96B5
41653	25735958	Shi L., Guo M., Ye N., Liu Y., Liu R., Xia Y., Cui S., Zhang J.	Reduced ABA Accumulation in the root system is Caused by ABA Exudation in Upland Rice (Oryza sativa L. var. Gaoshan1) and this Enhanced Drought Adaptation.	Plant Cell Physiol.	56(5)	951-64	2015	NCED1,ABA8OX1,NCED1,ABA8OX2	OsNCED1, OsCCD4a, CCD4a,OsABA8OX1, CYP707A5, OsCYP707A5, ABA8ox1, OsABA8ox1, OsABA8'OH1, ABA8'OH1 ,OSNCED1, OsNCED-1, OsNCED3, OsNced3, NCED3, OsNCED9, NCED9,OsABA8OX2, OsABA8ox2, CYP707A6, OsCYP707A6, OsAba-ox2, OsABA8ox2, OsABA8OH2, ABA8OH2, ABA8'-OH2, OsABA8'ox2, ABA8'ox2, OsABAX2, ABAX2, OsABA8'OH2, ABA8'OH2
41654	25750424	Rosas-Santiago P., Lagunas-G?mez D., Barkla B.J., Vera-Estrella R., Lalonde S., Jones A., Frommer W.B., Zimmermannova O., Sychrov? H., Pantoja O.	Identification of rice cornichon as a possible cargo receptor for the Golgi-localized sodium transporter OsHKT1;3.	J. Exp. Bot.	66(9)	2733-48	2015	_,_,HKT6	OsCNIH1, CNIH1,OsCNIH2, CNIH2,OsHKT6, OsHKT1;3, HKT1;3, OsHKT1;3_FL, OsHKT1;3_V1, OsHKT1;3_V2, OsHKT1;3_V3, OsHKT1;3_V4, OsHKT1;3_V5
41655	25807209	Nishizawa Y., Mochizuki S., Koiwai H., Kondo K., Kishimoto K., Katoh E., Minami E.	Rice ubiquitin ligase EL5 prevents root meristematic cell death under high nitrogen conditions and interacts with a cytosolic GAPDH.	Plant Signal Behav	10(3)	e990801	2015	GAPC,GAPC1,EL5,GAPC2	OsGapC3, OGapC3, OsGAPDH1, GAPDH1, OsGapC1,OsGapC1, OsGapC3,EL5.1, EL5.2, EL5.3, EL5.4, EL5.5, EL5.6,  OsRING64, RING64,GAPDH, OsGAPDH, OsGapC2
41656	25807460	Deng Z.Y., Liu L.T., Li T., Yan S., Kuang B.J., Huang S.J., Yan C.J., Wang T.	OsKinesin-13A Is an Active microtubule depolymerase Involved in glume length Regulation via Affecting Cell Elongation.	Sci Rep	5	9457	2015	SRS3	OsSRS3, SAR1, OsSAR1, KIN13A, OsKIN13A
41657	25786829	Wada S., Hayashida Y., Izumi M., Kurusu T., Hanamata S., Kanno K., Kojima S., Yamaya T., Kuchitsu K., Makino A., Ishida H.	Autophagy supports biomass production and nitrogen use efficiency at the vegetative stage in rice.	Plant Physiol.	168(1)	60-73	2015	ATG7	OsATG7, Atg7
41658	25772680	Tuteja N., Tarique M., Trivedi D.K., Sahoo R.K., Tuteja R.	Stress-induced Oryza sativa BAT1 dual helicase exhibits unique bipolar translocation.	Protoplasma			2015	AIP1	AIP1, Os AIP1, OsAIP1, OsRH56, OsBAT1, UAP56, OsUAP56, OsBAT1/UAP56
41659	25760462	Yu H., Jiang W., Liu Q., Zhang H., Piao M., Chen Z., Bian M.	Expression pattern and subcellular localization of the ovate protein family in rice.	PLoS ONE	10(3)	e0118966	2015	OFP2,_,_,OFP21,ESD1,_,OFP1,_,_,OFP4,_,_,_,_,_,_,_,_,_,_,_,OFP14,_,_,OFP3,_,_,_,_,_,_	OsOFP2, OsOFP03,OsOFP10, OsOFP14, OFP10, OFP14,OsOFP16, OsOFP24,OsOFP21, OsOFP10,OsOFP31, OsOFP26, OFP31, OFP26, OsSTA245, Os ESD1,OsOFP5, OsOFP07,OsOFP1, OsOFP01,OsOFP18, OsOFP28,OsOFP8, OsOFP12,OsOFP4, OsOFP06, OsOFP6, OFP6,OsOFP23, OsOFP20,OsOFP25, OsOFP23,OsOFP20, OsOFP31,OsOFP7, OsOFP11,OsOFP15, OsOFP22,OsOFP28, OsOFP25,OsOFP19, OsOFP30,OsOFP12, OsOFP17,OsOFP6, OsOFP09,OsOFP22, OsOFP05,OsOFP9, OsOFP13,OsOFP14, OsOFP21,OsOFP26, OsOFP29,OsOFP24, OsOFP15,OsOFP3, OsOFP04, OFP4,OsOFP11, OsOFP16,OsOFP30, OsOFP08, OsOFP8, OFP8, OFP30,OsOFP27, OsOFP02,OsOFP29, OsOFP18,OsOFP17, OsOFP27,OsOFP13, OsOFP19, OFP13, OFP19
41660	25824047	Tezuka D., Ito A., Mitsuhashi W., Toyomasu T., Imai R.	The rice ent-KAURENE SYNTHASE LIKE 2 encodes a functional ent-beyerene synthase.	Biochem. Biophys. Res. Commun.	460(3)	766-71	2015	KS2	OsKS2, KSL2, OsKSL2, OsTPS27, TPS27, TPS2, OsTPS2
41661	25841037	Yin C.C., Ma B., Collinge D.P., Pogson B.J., He S.J., Xiong Q., Duan K.X., Chen H., Yang C., Lu X., Wang Y.Q., Zhang W.K., Chu C.C., Sun X.H., Fang S., Chu J.F., Lu T.G., Chen S.Y., Zhang J.S.	Ethylene responses in rice roots and coleoptiles are differentially regulated by a carotenoid isomerase-mediated abscisic Acid pathway.	Plant Cell	27(4)	1061-81	2015	PHS3	OsCRTISO, MHZ5, MHZ5/CRTISO, CRTISO
41662	25901084	Yan J., Aboshi T., Teraishi M., Strickler S.R., Spindel J.E., Tung C.W., Takata R., Matsumoto F., Maesaka Y., McCouch S.R., Okumoto Y., Mori N., Jander G.	The tyrosine aminomutase TAM1 Is Required for beta-Tyrosine Biosynthesis in Rice.	Plant Cell	27(4)	1265-78	2015	_	OsPAL03, OsPAL9, TAM1, OsTAM1, TAM, OsTAM
41663	25901086	Mach J.	Production of the Non-Protein Amino Acid beta-Tyrosine in Rice.	Plant Cell	27(4)	949	2015	_	OsPAL03, OsPAL9, TAM1, OsTAM1, TAM, OsTAM
41664	25895479	Wang Y., Wang Q., Zhao Y., Han G., Zhu S.	Systematic analysis of maize class III peroxidase gene family reveals a conserved subfamily involved in abiotic stress response.	Gene			2015		
41665	25841039	Tanaka W., Ohmori Y., Ushijima T., Matsusaka H., Matsushita T., Kumamaru T., Kawano S., Hirano H.Y.	Axillary Meristem Formation in Rice Requires the WUSCHEL Ortholog TILLERS ABSENT1.	Plant Cell	27(4)	1173-84	2015	TAB1,OSH1,WOX4	Os WUS, WUS, OsWOX1, WOX1, OsWUS, OsTAB, TAB1/WUS, MOC3, MOC3/OsWUS, SRT1, MOC3/TAB1/SRT1, DC1, OsDC1, DAP1, OsDAP1,OSKN1, Oskn1, OsKN1, OSH1/Oskn1, HB75,OsWOX4, Os WOX4
41666	25893776	Bashir K., Ishimaru Y., Itai R.N., Senoura T., Takahashi M., An G., Oikawa T., Ueda M., Sato A., Uozumi N., Nakanishi H., Nishizawa N.K.	Iron deficiency regulated OsOPT7 is essential for iron homeostasis in rice.	Plant Mol. Biol.	88(1-2)	165-76	2015	OPT7,FRO2,NAS3,NAS2,NRAMP1,YSL15,NAS1,FER1,FER2,IRT2,IRO2,MIR,ZIFL5	OPT, OsOPT7,OsFRO2, OsFRO1,OsNAS3,OsNAS2, OsNAS1,OsNramp1, OsNRAMP1, OsNramp6,OsYSL15, OsYs7,OsNAS1,OsFER1, OsFer1 ,OsFER2, OsFer2,OsIRT2, OsIRT1, OsZIP15, ZIP15,OsIRO2, OsbHLH056, bHLH056, bHLH56, OsbHLH56,OsMIR,OsZIFL5, OsTOM2, TOM2
41667	25922483	Li T., Jiang J., Zhang S., Shu H., Wang Y., Lai J., Du J., Yang C.	OsAGSW1, an ABC1-like kinase gene, is involved in the regulation of grain size and weight in rice.	J. Exp. Bot.			2015	_	OsAGSW1, AGSW1
41668	25711814	Li S., Pan X.X., Berry J.O., Wang Y., Naren, Ma S., Tan S., Xiao W., Zhao W.Z., Sheng X.Y., Yin L.P.	OsSEC24, a functional SEC24-like protein in rice, improves tolerance to iron deficiency and high pH by enhancing H(+) secretion mediated by PM-H(+)-ATPase.	Plant Sci.	233	61-71	2015	_,AHA2	OsSEC24, OsSEC27, SEC24, SEC27,OSA2, OsA2, osAHA2, AHA2, OsPMA2
41669	25886365	Singh A., Jha S.K., Bagri J., Pandey G.K.	ABA Inducible Rice Protein Phosphatase 2C Confers ABA Insensitivity and Abiotic Stress Tolerance in Arabidopsis.	PLoS ONE	10(4)	e0125168	2015	PP2C1	OsPP2C1, OsSIPP2C1, SIPP2C1, OsPP2C68, PP2C68, OsPP108
41670	25754802	Chen X., Lu S., Wang Y., Zhang X., Lv B., Luo L., Xi D., Shen J., Ma H., Ming F.	OsNAC2 encoding a NAC transcription factor that affects plant height through mediating the gibberellic acid pathway in rice.	Plant J.	82(2)	302-14	2015	HD3A,SLRL1,KAO,KO4,ERF102,TIL1	Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,OsSLRL1, OsGAI, OsSLRL, OsGRAS-1, OsGRAS1, GAI, SLRL, GRAS-1, GRAS1,OsKAO, kao, CYP88A5, OSKAO, Os KAO, RPE1, KO1,OsKO4, OsKOL4, KOS1, CYP701A8, OsCYP701A8, OsKO2, CYP701A8/OsKOL4,OsERF#102, OsERF102, AP2/EREBP#123, AP2/EREBP123, OsEATB, EATB,NAC2, OsNAC2, ONAC004, ONAC4, ONAC034, ONAC34, ONAC058, ONAC58, OMTN2, Ostil1, OsNAC2/ONAC004, OsORE1.2, DLN113, OsDLN113
41671	25850808	Han S.H., Yoo S.C., Lee B.D., An G., Paek N.C.	Rice FLAVIN-BINDING, KELCH REPEAT, F-BOX 1 (OsFKF1) promotes flowering independent of photoperiod.	Plant Cell Environ.			2015	GHD7,DOF21,EF1,FKF1,RDD4,EHD2/RID1,GI,RDD2	Ghd2, Ghd7, OsGhd7, OsCCT26, OsCMF8, OsI, Ghd7/Hd4, Hd4, EH7-1/Hd4, Ghd7-0a, EH7-1, EH7/Ghd7, EH7, OsEH7, GLW7.1, OsGLW7.1,OsDof21, Dof21, OsDof-21, OsCDF2, CDF2, OsDof22, Dof22,Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,OsFbox609, Os_F0370, OsFKF1,  OsFBO10, FBO10,OsDof12, Dof12, OsDof-12, OsCDF1, OsCDF1/OsDOF12, OsDOF12, CDF1, DOF12, OsDof11, Dof11,Ehd2, RID1, OsID1, ID1, OsId1, OsID, Ehd2/RID1/OsId1, RID1/OsID1/Ehd2,OsGI, Gi, Os-GI,OsDof23, Dof23, OsDof-23, OsDof1, OsCDF3, CDF3, OsDof24, Dof24
41672	25903544	Wan C., Li C., Ma X., Wang Y., Sun C., Huang R., Zhong P., Gao Z., Chen D., Xu Z., Zhu J., Gao X., Wang P., Deng X.	GRY79 encoding a putative metallo-beta-lactamase-trihelix chimera is involved in chloroplast development at early seedling stage of rice.	Plant Cell Rep.			2015	GRY79	OsGRY79, OsMSL12, MSL12
41673	25711812	Wu Y.P., Pu C.H., Lin H.Y., Huang H.Y., Huang Y.C., Hong C.Y., Chang M.C., Lin Y.R.	Three novel alleles of FLOURY ENDOSPERM2 (flo2) confer dull grains with low amylose content in rice.	Plant Sci.	233	44-52	2015	AGPS2,SBE3,SBE1,WX1,AGPL2,FLO2,PUL,PHS8	OsAGPS2a, AGPS2A, AGPS2B, OsAGPS2, osagps2, APS2, APS2a, APS2b, AGPS2a, APGS2b, OsAGPS2b, AGPP, GAS8, OsAPS2, OsAPS2a, OsAPS2b,SBEIII*, SBEIII, Sbe3, RBE3, QEIIa, QEIIA, BEIIb, BEIIB, SBEIIb, OsBEIIb, sbe3, SBE III, OsSBEIIb, SBEIIb,sbe1, Rbe1. Sbe1, sbe1*(QEI), RBE1, BEI, SBE I, QEI, OsBEI, BE1, OsSBE1, OsSBEI, SBEI,wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx,OsAGPL2, osagpl2, APL2, OsAPL2, AGPiso, sh2, Sh2, GIF2, GAS1 ,flo2, flo3(t), Osflo2, Osflo3(t), Osflo-2, flo-2, FLO2-1, FLO2-2,OsPUL, SDBE, OsPUL3, RE,ISA1, OsISA1, ISA, OsISA, PHS8/ISA1, OsPHS8, ISA I, OsISA I, ISAI, OsISAI
41674	25902049	E Z., Zhang Y., Li T., Wang L., Zhao H.	Characterization of the Ubiquitin-Conjugating Enzyme Gene Family in Rice and Evaluation of Expression Profiles under Abiotic Stresses and Hormone Treatments.	PLoS ONE	10(4)	e0122621	2015	UBC23,UBC10,UBC48,UBC37,UBC4,UBC33,UBC36,_,UBC7,UBC39,_,SCE2,UBC12,UBC11,_,UBC5A,UBC13,UBC34,UBC18,UBC,UBC25,SMG3,UBC46,UBC8,UBC42,UBC44,UBC26,UBC43,UBC40,UBC17,UBC3,UBC5B,UBC41,UBC27,UBC5,UBC22,_,UBC6,LTN1	OsUBC23,OsUBC10,OsUBC48,OsUBC37,OsUBC4,OsUBC33,OsUBC36,Dhr6, OsUBC5b, OsUBC16, UBC16,OsUBC7,OsUBC39,OsUBC13, UBC13,OsSce2, Sce2, OsUBC2, UBC2, OsSCE1a, SCE1a, OsSCE1a.1, OsSCE1a.2,OsUBC12,OsUBC11,OsSce1, OsUBC1, UBC1, OsSCE1b, SCE1b, OsSCE1b.1, OsSCE1b.2,OsUBC5a, OsUBC14, UBC14,OsUbc13, Ubc13, OsUBC47, UBC47,OsUBC34,OsUBC18,UBC, OsUBC32, UBC32,OsUBC25,OsUBC45, UBC45, OsSMG3,OsUBC46,OsUBC8,OsUBC42,OsUBC44,OsUBC26,OsUBC43,OsUBC40,OsUBC17,OsUBC3, OsSCE1c, SCE1c, OsSCE1c.1, OsSCE1c.2, OsSCE3, SCE3,OsUBC5b, OsUBC15, UBC15,OsUBC41,OsUBC27,OsUBC5,OsUBC22,Rad6, OsRad6, Dhr6, OsUBC9, UBC9,OsUBC6,LTN1, OsPHO2, PHO2.1, PHO2.2, PHO2, OsUBC35, UBC35
41675	25856151	Singh P., Mohanta T.K., Sinha A.K.	Unraveling the Intricate Nexus of Molecular Mechanisms Governing Rice Root Development: OsMPK3/6 and Auxin-Cytokinin Interplay.	PLoS ONE	10(4)	e0123620	2015	PIN9,PIN1B,DSG1,SMG1,MKK5,MSRMK2	OsPIN9,PIN1A, OsPIN1A, OsPIN1a, REH1, OsPIN1, OsPIN1b, REH1/OsPIN1,OsMAPK6, MAPK6, OsMPK6, OsSIPK, SIPK, OsMAPK1, MAPK1, MPK1, OsMPK1, MPK6, OsDSG1,OsMKK4, MKK4, OsMKK4/SMG1, OsMAPKK4, MAPKK4, OsMEK4, MEK4, OsSMG1, SMG1/OsMEK6, OsMEK6, MEK6, OsSTS, STS,OsMKK5, BUD1, OsBUD1,OsMSRMK2, OsMAPK5, OsMAP1, OsMPK3, OsBIMK1, OsMAPK2, MPK5, BIMK1, MAPK2, MAPK5, MPK3, OsMPK5, OsMAPK3, OsMAPK5b, MAPK3
41676	25925167	Mukhopadhyay P., Tyagi A.K., Tyagi A.K.	OsTCP19 influences developmental and abiotic stress signaling by modulating ABI4-mediated pathways.	Sci Rep	5	9998	2015	_,ERF117,TCP19,_	OsULT1,OsERF#117, OsERF117, AP2/EREBP#150, AP2/EREBP150, OsABI4, ABI4,OsTCP19,OsDGAT
41677	25893869	Ding W., Lin L., Zhang B., Xiang X., Wu J., Pan Z., Zhu S.	OsKASI, a beta-ketoacyl-[acyl carrier protein] synthase I, is involved in root development in rice (Oryza sativa L.).	Planta			2015	KASI-1	OsKASI, KASI, OsKASI-1
41678	25863286	Komvongsa J., Luang S., Marques J.V., Phasai K., Davin L.B., Lewis N.G., Ketudat Cairns JR.	Active site cleft mutants of Os9BGlu31 transglucosidase modify acceptor substrate specificity and allow production of multiple kaempferol glycosides.	Biochim. Biophys. Acta	1850(7)	1405-1414	2015	BGLU31	Os9bglu31, Os9BGlu31 
41679	25907566	R Taylor M., Reinders A., M Ward J.	Transport Function of Rice Amino Acid Permeases (AAPs).	Plant Cell Physiol.			2015	AAP11F,AAP12A,AAP11A,AAP6	OsAAP11F, OsAAP7, AAP7, FCO7,OsAAP12A, OsAAP3, AAP3,OsAAP11A, OsAAP16, AAP16,OsAAP6, OsAAP1, AAP1
41680	25855237	Tianpei X., Mao Z., Zhu Y., Li S.	Expression of Rice Mature Carbonic Anhydrase Gene Increase E. coli Tolerance to Heat Stress.	Appl. Biochem. Biotechnol.			2015	BETACA1	OsCA, CA, OsbetaCA1, betaCA1, CA1
41681	25847193	Lee S.S., Park H.J., Yoon D.H., Kim B.G., Ahn J.C., Luan S., Cho H.S.	Rice cyclophilin OsCYP18-2 is translocated to the nucleus by an interaction with SKIP and enhances drought tolerance in rice and Arabidopsis.	Plant Cell Environ.			2015	CYP18-2,SKIPA	OsCYP18-2, OsCYP-23, OsCYP18-2a, OsCYP18-2b, OsCYP18-2c, SIP12 ,OsSKIPa, OsSKIP, SKIP
41682	25711810	Li J., Qin R.Y., Li H., Xu R.F., Qiu C.H., Sun Y.C., Ma H., Yang Y.C., Ni D.H., Li L., Wei P.C., Yang J.B.	Identification and analysis of the mechanism underlying heat-inducible expression of rice aconitase 1.	Plant Sci.	233	22-31	2015	_	OsACO1, ACO1, OsACO2, ACO2
41683	25923512	Li Y., Ouyang J., Wang Y.Y., Hu R., Xia K., Duan J., Wang Y., Tsay Y.F., Zhang M.	Disruption of the rice nitrate transporter OsNPF2.2 hinders root-to-shoot nitrate transport and vascular development.	Sci Rep	5	9635	2015	PTR2	OsPTR2, OsNPF2.2, NPF2.2
41684	25807334	Kumar S., Asif M.H., Chakrabarty D., Tripathi R.D., Dubey R.S., Trivedi P.K.	Comprehensive analysis of regulatory elements of the promoters of rice sulfate transporter gene family and functional characterization of OsSul1;1 promoter under different metal stress.	Plant Signal Behav	10(4)	e990843	2015	SULTR5;1,SULTR3;1,SULTR3;2,LPA,SULTR2;1,SULTR2;2,SULTR1;3,SULTR3;4,SULTR3;6,SULTR3;5,SULTR1;2,SULTR5;2,SULTR4;1,SULTR1;1	OsSultr5;1, OsSul5;1, OsMOT1;2, MOT1;2,OsSultr3;1, OsSul3;1,OsSultr3;2, OsSul3;2,OsSultr3;3, OsSul3;3, SULTR3;3 ,OsSultr2;1, OsSul2;1, OsaSULTR2, SULTR2,OsSultr2;2, OsSul2;2, OsaSULTR2;1, SULTR2;1, OsSULTR2;1,OsSultr1;3, OsSul1;3,OsSultr3;4, OsSul3;4, OsaSULTR3;4, SPDT, OsSPDT,OsSultr3;6, OsSul3;6, OsSULTR3;6 ,OsSultr3;5, OsSul3;5,OsSultr1;2, OsSul1;2,OsSultr5;2, OsSul5;2, Os-MOT1;1, OsMOT1;1, MOT1;1, qGMo8, MOT1,OsSultr4;1, OsSul4;1, OsSultr4;1(a), OsSultr4;1(b), OsSultr4;1(c), OsSultr4;1(d),OsSultr1;1, OsSul1;1, Sul1;1, OsSultr1;1(a), OsSultr1;1(b)
41685	25854544	Song W.Y., Lee H.S., Jin S.R., Ko D., Martinoia E., Lee Y., An G., Ahn S.N.	Rice PCR1 influences grain weight and Zn accumulation in grains.	Plant Cell Environ.			2015	PCR1	OsFWL5, FWL5, OsPcr1, OsPCR1, OsFWL5/OsPCR1, OsFWL7, FWL7
41686	25910649	Tiwari L.D., Mittal D., Chandra Mishra R., Grover A.	Constitutive over-expression of rice chymotrypsin protease inhibitor gene OCPI2 results in enhanced growth, salinity and osmotic stress tolerance of the transgenic Arabidopsis plants.	Plant Physiol. Biochem.	92	48-55	2015	OCPI2	OsSRO1a, SRO1a, CPI2, OsCPI2, OCPI1
41687	25869654	Liu L., Paulitz J., Pauly M.	The presence of fucogalactoxyloglucan and its synthesis in rice indicates conserved functional importance in plants.	Plant Physiol.			2015		
41688	25860838	Gutjahr C., Siegler H., Haga K., Iino M., Paszkowski U.	Full establishment of arbuscular mycorrhizal symbiosis in rice occurs independently of enzymatic jasmonate biosynthesis.	PLoS ONE	10(4)	e0123422	2015		
41689	25855537	Jin J., Shi J., Liu B., Liu Y., Huang Y., Yu Y., Dong A.	MRG702, a reader protein of H3K4me3 and H3K36me3, is involved in brassinosteroid-regulated growth and flowering time control in rice.	Plant Physiol.			2015	D11,HD3A,D61,EF1,SDG725,EHD2/RID1,EHD3,MRG702,RFT1,MRG701,BU1,MADS50	d11(d8), dwf10, d8, D11/CYP724B1, d11, CYP724B1, GNS4, OsD11, PMM1, OsPMM1, PMM1/D11, NBG4, OsCPB1, CPB1, CPB1/D11,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,d61*, dwf42, d61, OsBRI1, OSBRI1, BRI1, Os BRI1, Osbri1, OsBRKq1, BRKq1,Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,OsSDG725, OsSET8, ASHH2,Ehd2, RID1, OsID1, ID1, OsId1, OsID, Ehd2/RID1/OsId1, RID1/OsID1/Ehd2,Ehd3, OsPHD36, PHD36,OsMRG702,FT-L 3, OsFTL3, FTL3, FT-L3, RFT, OsRFT1,OsMRG701,ILI4, OsILI4 , OsBU1, BU1/ILI4, OsbHLH172, bHLH172,OsMADS50, AGL20, SOC1, OsSOC1, RMADS208, OsSOC1/ OsMADS50/DTH3, DTH3, OsDTH3
41690	25884488		Correction: The RhoGAP SPIN6 Associates with SPL11 and OsRac1 and Negatively Regulates Programmed Cell Death and Innate Immunity in Rice.	PLoS Pathog.	11(4)	e1004807	2015	_,_,_,RAR1,SPL11,SGT1,RAC1	Spin6.2,Spin6.3,SPIN6, Spin6, SIP11 ,Os RAR1, OsRAR1,spl11, spl11*, OsPUB11, PUB11,  OsPUB11/SPL11, PUB11/SPL11,OsSgt1, OsSGT1, Os SGT1,OsRAC1, OsRac1, Os Rac1, Rac1, Os-Rac1
41691	25896119	Chen J., Li C., Yang Z.	Identification and Expression of Two Novel Cytochrome P450 Genes, CYP6CV1 and CYP9A38, in Cnaphalocrocis medinalis (Lepidoptera: Pyralidae).	J. Insect Sci.	15(1)		2015		
41692	25869921	Khanna A., Sharma V., Ellur R.K., Shikari A.B., Gopala Krishnan S., Singh U.D., Prakash G., Sharma T.R., Rathour R., Variar M., Prashanthi S.K., Nagarajan M., Vinod K.K., Bhowmick P.K., Singh N.K., Prabhu K.V., Singh B.D., Singh A.K.	Development and evaluation of near-isogenic lines for major blast resistance gene(s) in Basmati rice.	Theor. Appl. Genet.			2015		
41693	25740115	Tsuji H., Tachibana C., Tamaki S., Taoka K., Kyozuka J., Shimamoto K.	Hd3a promotes lateral branching in rice.	Plant J.	82(2)	256-66	2015		
41694	25888593	Sun H., Tao J., Hou M., Huang S., Chen S., Liang Z., Xie T., Wei Y., Xie X., Yoneyama K., Xu G., Zhang Y.	A strigolactone signal is required for adventitious root formation in rice.	Ann. Bot.			2015		
41695	25849038	Sun T.J., Lu Y., Narusaka M., Shi C., Yang Y.B., Wu J.X., Zeng H.Y., Narusaka Y., Yao N.	A novel pyrimidin-like plant activator stimulates plant disease resistance and promotes growth.	PLoS ONE	10(4)	e0123227	2015		
41696	25845410	Lee J., Park J., Kim S., Park I., Seo Y.S.	Differential regulation of toxoflavin production and its role in the enhanced virulence of Burkholderia gladioli.	Mol. Plant Pathol.			2015		
41697	25855206	Ma X.L., Cui W.N., Zhao Q., Zhao J., Hou X.N., Li D.Y., Chen Z.L., Shen Y.Z., Huang Z.J.	Functional study of a salt-inducible TaSR gene in Triticum aestivum.	Physiol Plant			2015		
41698	25902895	Roy A., Sahoo D., Tripathy B.C.	Light-hormone interaction in the red-light-induced suppression of photomorphogenesis in rice seedlings.	Protoplasma			2015		
41699	25873666	Hazman M., Hause B., Eiche E., Nick P., Riemann M.	Increased tolerance to salt stress in OPDA-deficient rice ALLENE OXIDE CYCLASE mutants is linked to an increased ROS-scavenging activity.	J. Exp. Bot.			2015		
41700	25782973	Byeon Y., Lee H.Y., Back K.	Chloroplastic and cytoplasmic overexpression of sheep Serotonin N-acetyltransferase in transgenic rice plants is associated with low melatonin production despite high enzyme activity.	J. Pineal Res.	58(4)	461-9	2015		
41701	25954322	Roffler S., Wicker T.	Genome-wide comparison of Asian and African rice reveals high recent activity of DNA transposons.	Mob DNA	6	8	2015		
41702	25893467	Luo J., Ahmed R., Kosar-Hashemi B., Larroque O., Butardo V.M., Tanner G.J., Colgrave M.L., Upadhyaya N.M., Tetlow I.J., Emes M.J., Millar A., Jobling S.A., Morell M.K., Li Z.	The different effects of starch synthase IIa mutations or variation on endosperm amylose content of barley, wheat and rice are determined by the distribution of starch synthase I and starch branching enzyme IIb between the starch granule and amyloplast stroma.	Theor. Appl. Genet.			2015		
41703	25932456	Xu H., Zhao Y., Qian G., Liu F.	XocR, a LuxR solo required for virulence in Xanthomonas oryzae pv. oryzicola.	Front Cell Infect Microbiol	5	37	2015		
41704	25907061	Lee K.E., Radhakrishnan R., Kang S.M., You Y.H., Joo G.J., Lee I.J., Ko J.H., Kim J.H.	Enterococcus faecium LKE12 Cell-Free-Extract Accelerates Host Plant Growth via Gibberellin and Indole-3-Acetic Acid Secretion.	J. Microbiol. Biotechnol.			2015		
41705	25856577	Wang M., Liu Y., Zhang C., Liu J., Liu X., Wang L., Wang W., Chen H., Wei C., Ye X., Li X., Tu J.	Gene Editing by Co-Transformation of TALEN and Chimeric RNA/DNA Oligonucleotides on the Rice OsEPSPS Gene and the Inheritance of Mutations.	PLoS ONE	10(4)	e0122755	2015		
41706	25849365	Cahn J.K., Brinkmann-Chen S., Spatzal T., Wiig J.A., Buller A.R., Einsle O., Hu Y., Ribbe M.W., Arnold F.H.	Cofactor specificity motifs and the induced fit mechanism in Class I ketol-acid reductoisomerases.	Biochem. J.			2015		
41707	25403809	Tang H., Liu G., Zhu J., Kobayashi K.	Effects of elevated ozone concentration on CH4 and N2O emission from paddy soil under fully open-air field conditions.	Glob Chang Biol	21(4)	1727-36	2015		
41708	25641067	Behera S., Wang N., Zhang C., Schmitz-Thom I., Strohkamp S., Sch?ltke S., Hashimoto K., Xiong L., Kudla J.	Analyses of Ca(2+) dynamics using a ubiquitin-10 promoter-driven Yellow Cameleon 3.6 indicator reveal reliable transgene expression and differences in cytoplasmic Ca(2+) responses in Arabidopsis and rice (Oryza sativa) roots.	New Phytol.	206(2)	751-60	2015		
41709	25867543	Zhang H., Gou F., Zhang J., Liu W., Li Q., Mao Y., Botella J.R., Zhu J.K.	TALEN-mediated targeted mutagenesis produces a large variety of heritable mutations in rice.	Plant Biotechnol. J.			2015		
41710	25917598	Suzuki Y., Miura K., Shigemune A., Sasahara H., Ohta H., Uehara Y., Ishikawa T., Hamada S., Shirasawa K.	Marker-assisted breeding of a LOX-3-null rice line with improved storability and resistance to preharvest sprouting.	Theor. Appl. Genet.			2015		
41711	25922485	Chen Y., Moore K.L., Miller A.J., McGrath S.P., Ma J.F., Zhao F.J.	The role of nodes in arsenic storage and distribution in rice.	J. Exp. Bot.			2015		
41712	25919452	Chen C., Song Y., Zhuang K., Li L., Xia Y., Shen Z.	Proteomic Analysis of Copper-Binding Proteins in Excess Copper-Stressed Roots of Two Rice (Oryza sativa L.) Varieties with Different Cu Tolerances.	PLoS ONE	10(4)	e0125367	2015		
41713	25865409	Golestan Hashemi FS., Rafii M.Y., Razi Ismail M., Mohamed M.T., Harun R.A., Latif M.A., Aslani F.	Opportunities of marker-assisted selection for rice fragrance through marker-trait association analysis of microsatellites and gene-based markers.	Plant Biol (Stuttg)			2015		
41714	25650041	Narsai R., Edwards J.M., Roberts T.H., Whelan J., Joss G.H., Atwell B.J.	Mechanisms of growth and patterns of gene expression in oxygen-deprived rice coleoptiles.	Plant J.	82(1)	25-40	2015		
41715	25923431	Tsukahara K., Sawada H., Kohno Y., Matsuura T., Mori I.C., Terao T., Ioki M., Tamaoki M.	Ozone-Induced Rice grain yield Loss Is Triggered via a Change in Panicle Morphology That Is Controlled by ABERRANT PANICLE ORGANIZATION 1 Gene.	PLoS ONE	10(4)	e0123308	2015		
41716	25920996	Huang C.K., Lo P.C., Huang L.F., Wu S.J., Yeh C.H., Lu C.A.	A single-repeat MYB transcription repressor, MYBH, participates in regulation of leaf senescence in Arabidopsis.	Plant Mol. Biol.			2015		
41717	25923523	Wu Y., Fu Y., Zhao S., Gu P., Zhu Z., Sun C., Tan L.	CLUSTERED PRIMARY BRANCH 1, a new allele of DWARF11, controls panicle architecture and seed size in rice.	Plant Biotechnol. J.			2015	D11	d11(d8), dwf10, d8, D11/CYP724B1, d11, CYP724B1, GNS4, OsD11, PMM1, OsPMM1, PMM1/D11, NBG4, OsCPB1, CPB1, CPB1/D11
41718	25839331	Naveed M., Sohail Y., Khalid N., Ahmed I., Mumtaz A.S.	Evaluation of glucose dehydrogenase and pyrroloquinoline quinine (pqq) mutagenesis that renders functional inadequacies in host plants.	J. Microbiol. Biotechnol.			2015		
41719	25884499	Hayashi H., Ishikawa-Sakurai J., Murai-Hatano M., Ahamed A., Uemura M.	Aquaporins in developing rice grains.	Biosci. Biotechnol. Biochem.		1-8	2015		
41720	25863133	Rhee S., Chae H., Kim S.	PlantMirnaT: miRNA and mRNA integrated analysis fully utilizing characteristics of plant sequencing data.	Methods			2015		
41721	25838497	de Souza R., Sant'Anna FH., Ambrosini A., Tadra-Sfeir M., Faoro H., Pedrosa F.O., Souza E.M., Passaglia L.M.	Genome of Rhizobium sp. UR51a, Isolated from Rice Cropped in Southern Brazilian Fields.	Genome Announc	3(2)		2015		
41722	25895682	Ye C., Tenorio F.A., Argayoso M.A., Laza M.A., Koh H.J., Redo?a ED., Jagadish K.S., Gregorio G.B.	Identifying and confirming quantitative trait loci associated with heat tolerance at flowering stage in different rice populations.	BMC Genet.	16	41	2015		
41723	25904926	Gao D., Jiang N., Wing R.A., Jiang J., Jackson S.A.	Transposons play an important role in the evolution and diversification of centromeres among closely related species.	Front Plant Sci	6	216	2015		
41724	25926037	Tan Y., Xu X., Wang C., Cheng G., Li S., Liu X.	Molecular characterization and application of a novel cytoplasmic male sterility-associated mitochondrial sequence in rice.	BMC Genet.	16	45	2015		
41725	25862679	Mao D., Yu L., Chen D., Li L., Zhu Y., Xiao Y., Zhang D., Chen C.	Multiple cold resistance loci confer the high cold tolerance adaptation of Dongxiang wild rice (Oryza rufipogon) to its high-latitude habitat.	Theor. Appl. Genet.			2015		
41726	25923314	Xiong D., Liu X.I., Liu L., Douthe C., Li Y., Peng S., Huang J.	Rapid responses of mesophyll conductance to changes of CO2 concentration, temperature and irradiance are affected by N supplements in rice.	Plant Cell Environ.			2015		
41727	25907026	Jouet A., McMullan M., van Oosterhout C.	The effects of recombination, mutation and selection on the evolution of the Rp1 resistance genes in grasses.	Mol. Ecol.			2015		
41728	25906371	Schwessinger B., Bahar O., Thomas N., Holton N., Nekrasov V., Ruan D., Canlas P.E., Daudi A., Petzold C.J., Singan V.R., Kuo R., Chovatia M., Daum C., Heazlewood J.L., Zipfel C., Ronald P.C.	Correction: Transgenic Expression of the Dicotyledonous Pattern Recognition Receptor EFR in Rice Leads to Ligand-Dependent Activation of Defense Responses.	PLoS Pathog.	11(4)	e1004872	2015		
41729	25901158	Nazari F., Sulyok M., Kobarfard F., Yazdanpanah H., Krska R.	Evaluation of Emerging Fusarium mycotoxins beauvericin, Enniatins, Fusaproliferin and Moniliformin in Domestic Rice in Iran.	Iran J Pharm Res	14(2)	505-12	2015		
41730	25837042	Dong Y., Li Y., Zhao M., Jing M., Liu X., Liu M., Guo X., Zhang X., Chen Y., Liu Y., Liu Y., Ye W., Zhang H., Wang Y., Zheng X., Wang P., Zhang Z.	Global Genome and Transcriptome Analyses of Magnaporthe oryzae Epidemic Isolate 98-06 Uncover Novel Effectors and Pathogenicity-Related Genes, Revealing Gene Gain and Lose Dynamics in Genome Evolution.	PLoS Pathog.	11(4)	e1004801	2015		
41731	25857664	Bai C., Capell T., Berman J., Medina V., Sandmann G., Christou P., Zhu C.	Bottlenecks in carotenoid biosynthesis and accumulation in rice endosperm are influenced by the precursor-product balance.	Plant Biotechnol. J.			2015		
41732	25915023	Bao A., Liang Z., Zhao Z., Cai H.	Overexpressing of OsAMT1-3, a High Affinity Ammonium Transporter Gene, Modifies Rice Growth and Carbon-Nitrogen Metabolic Status.	Int J Mol Sci	16(5)	9037-63	2015		
41733	25859292	Lin D., Gong X., Jiang Q., Zheng K., Zhou H., Xu J., Teng S., Dong Y.	The rice ALS3 encoding a novel pentatricopeptide repeat protein is required for chloroplast development and seedling growth.	Rice (N Y)	8	17	2015	ALS3	OsALS3
41734	25865338	Mondal M.S., Saleh A.F., Razzaque Akanda MA., Biswas S.K., Md Moslehuddin AZ., Zaman S., Lazar A.N., Clarke D.	Simulating yield response of rice to salinity stress with the AquaCrop model.	Environ Sci Process Impacts			2015		
41735	25917172	Ma X., Zhang Q., Zhu Q., Liu W., Chen Y., Qiu R., Wang B., Yang Z., Li H., Lin Y., Xie Y., Shen R., Chen S., Wang Z., Chen Y., Guo J., Chen L., Zhao X., Dong Z., Liu Y.G.	A robust CRISPR/Cas9 system for convenient, high-efficiency multiplex genome editing in monocot and dicot plants.	Mol Plant			2015		
41736	25954282	Yamamoto N., Takano T., Tanaka K., Ishige T., Terashima S., Endo C., Kurusu T., Yajima S., Yano K., Tada Y.	Comprehensive analysis of transcriptome response to salinity stress in the halophytic turf grass Sporobolus virginicus.	Front Plant Sci	6	241	2015		
41737	25783167	Byeon Y., Lee H.Y., Hwang O.J., Lee H.J., Lee K., Back K.	Coordinated regulation of melatonin synthesis and degradation genes in rice leaves in response to cadmium treatment.	J. Pineal Res.	58(4)	470-8	2015		
41738	25846381	Wang F., Singh R., Genovesi A.D., Wai C.M., Huang X., Chandra A., Yu Q.	Sequence-tagged high-density genetic maps of Zoysia japonica provide insights into genome evolution in Chloridoideae.	Plant J.			2015		
41739	25843222	Tanweer F.A., Rafii M.Y., Sijam K., Rahim H.A., Ahmed F., Latif M.A.	Current advance methods for the identification of blast resistance genes in rice.	C. R. Biol.			2015		
41740	25902056	Singh S., Chand S., Singh N.K., Sharma T.R.	Genome-Wide Distribution, Organisation and Functional Characterization of disease resistance and Defence Response Genes across Rice Species.	PLoS ONE	10(4)	e0125964	2015		
41741	25875607	Liu Q., Wu X., Ma J., Chen B., Xin C.	Effects of Delaying Transplanting on Agronomic Traits and grain yield of Rice under Mechanical Transplantation Pattern.	PLoS ONE	10(4)	e0123330	2015		
41742	25896918	Zhang D., Kong W., Robertson J., Goff V.H., Epps E., Kerr A., Mills G., Cromwell J., Lugin Y., Phillips C., Paterson A.H.	Genetic analysis of inflorescence and plant height components in sorghum (Panicoidae) and comparative genetics with rice (Oryzoidae).	BMC Plant Biol.	15	107	2015		
41743	25910688	Farrow E.M., Wang J., Burken J.G., Shi H., Yan W., Yang J., Hua B., Deng B.	Reducing arsenic accumulation in rice grain through iron oxide amendment.	Ecotoxicol. Environ. Saf.	118	55-61	2015		
41744	25923345	Duitama J., Silva A., Sanabria Y., Cruz D.F., Quintero C., Ballen C., Lorieux M., Scheffler B., Farmer A., Torres E., Oard J., Tohme J.	Whole genome sequencing of elite rice cultivars as a comprehensive information resource for marker assisted selection.	PLoS ONE	10(4)	e0124617	2015		
41745	25842038	Nasanit R., Krataithong K., Tantirungkij M., Limtong S.	Assessment of epiphytic yeast diversity in rice (Oryza sativa) phyllosphere in Thailand by a culture-independent approach.	Antonie Van Leeuwenhoek			2015		
41746	25842177	Shenton M.R., Ohyanagi H., Wang Z.X., Toyoda A., Fujiyama A., Nagata T., Feng Q., Han B., Kurata N.	Rapid turnover of antimicrobial-type cysteine-rich protein genes in closely related Oryza genomes.	Mol. Genet. Genomics			2015		
41747	25917758	Hu Y., Liang W., Yin C., Yang X., Ping B., Li A., Jia R., Chen M., Luo Z., Cai Q., Zhao X., Zhang D., Yuan Z.	Interactions of OsMADS1 with Floral Homeotic Genes in Rice Flower Development.	Mol Plant			2015		
41748	25912474	Liang C., Zheng G., Li W., Wang Y., Hu B., Wang H., Wu H., Qian Y., Zhu X.G., Tan D.X., Chen S.Y., Chu C.	Melatonin Delays leaf senescence and Enhances Salt Stress Tolerance in Rice.	J. Pineal Res.			2015		
41749	25901895	Chan W.F., Li W.C., Wong M.H.	Uptake Kinetics of Arsenic in Upland Rice Cultivar Zhonghan 221 Inoculated with Arbuscular Mycorrhizal Fungi.	Int J Phytoremediation		0	2015		
41750	25931193	Fang Y., Lin H., Wu L., Ren D., Ye W., Dong G., Zhu L., Guo L.	Genome sequence of Xanthomonas sacchari R1, a biocontrol bacterium isolated from the rice seed.	J. Biotechnol.	206	77-78	2015		
41751	25758958	Kitaoka N., Wu Y., Xu M., Peters R.J.	Optimization of recombinant expression enables discovery of novel cytochrome P450 activity in rice diterpenoid biosynthesis.	Appl. Microbiol. Biotechnol.			2015		
41752	25867385	Moraes G.P., Benitez L.C., do Amaral MN., Vighi I.L., Auler P.A., da Maia LC., Bianchi V.J., Braga E.J.	Evaluation of reference genes for RT-qPCR studies in the leaves of rice seedlings under salt stress.	Genet. Mol. Res.	14(1)	2384-98	2015		
41753	25820664	Cingel A., Savi? J., Vinterhalter B., Vinterhalter D., Kosti? M., ?e?lija Jovanovi? D., Smigocki A., Ninkovi? S.	Growth and development of Colorado potato beetle larvae, Leptinotarsa decemlineata, on potato plants expressing the oryzacystatin II proteinase inhibitor.	Transgenic Res.			2015		
41754	25846878	Zhao L., Yan S., Huang R., Zhu S., Xiong H., Peng Z., Zhou Q., Huang Y., Shen X.	Characterization and fine mapping of a female fertility associated gene Ff1(t) in rice.	J. Genet.	94(1)	67-73	2015		
41755	25785447	Begum H., Spindel J.E., Lalusin A., Borromeo T., Gregorio G., Hernandez J., Virk P., Collard B., McCouch S.R.	Genome-wide association mapping for yield and other agronomic traits in an elite breeding population of tropical rice (Oryza sativa).	PLoS ONE	10(3)	e0119873	2015		
41756	25770588	Wang B., Li G., Zhang W.H.	Brassinosteroids are involved in Fe homeostasis in rice (Oryza sativa L.).	J. Exp. Bot.	66(9)	2749-61	2015		
41757	25867306	Wen Z.H., Zeng Y.X., Ji Z.J., Yang C.D.	Mapping quantitative trait loci for sheath blight disease resistance in Yangdao 4 rice.	Genet. Mol. Res.	14(1)	1636-49	2015		
41758	25857777	Godbole A., Dubey A.K., Mitra R., Reddy P.S., Mathew M.K.	Expression and Purification of OsVDAC4.	Meth. Enzymol.	556	51-75	2015		
41759	25821973	Schwessinger B., Bahar O., Thomas N., Holton N., Nekrasov V., Ruan D., Canlas P.E., Daudi A., Petzold C.J., Singan V.R., Kuo R., Chovatia M., Daum C., Heazlewood J.L., Zipfel C., Ronald P.C.	Transgenic expression of the dicotyledonous pattern recognition receptor EFR in rice leads to ligand-dependent activation of defense responses.	PLoS Pathog.	11(3)	e1004809	2015		
41760	25617323	Kusuda H., Koga W., Kusano M., Oikawa A., Saito K., Hirai M.Y., Yoshida K.T.	Ectopic expression of myo-inositol 3-phosphate synthase induces a wide range of metabolic changes and confers salt tolerance in rice.	Plant Sci.	232	49-56	2015		
41761	25739079	Wang Y.P., Wei Z.Y., Zhang Y.Y., Lin C.J., Zhong X.F., Wang Y.L., Ma J.Y., Ma J., Xing S.C.	Chloroplast-expressed MSI-99 in tobacco improves disease resistance and displays inhibitory effect against rice blast fungus.	Int J Mol Sci	16(3)	4628-41	2015		
41762	25844120	Luo J., Jobling S.A., Millar A., Morell M.K., Li Z.	Allelic effects on starch structure and properties of six starch biosynthetic genes in a rice recombinant inbred line population.	Rice (N Y)	8	15	2015		
41763	25853032	Soh H.S., Chung H.Y., Lee H.H., Ajjappala H., Jang K., Park J.H., Sim J.S., Lee G.Y., Lee H.J., Han Y.H., Lim J.W., Choi I., Chung I.S., Hahn B.S.	Expression and functional validation of heat-labile enterotoxin B (LTB) and cholera toxin B (CTB) subunits in transgenic rice (Oryza sativa).	Springerplus	4	148	2015		
41764	25819088	Kameoka H., Kyozuka J.	Downregulation of Rice DWARF 14 LIKE Suppress Mesocotyl Elongation via a Strigolactone Independent Pathway in the Dark.	J Genet Genomics	42(3)	119-24	2015		
41765	25844121	Kitomi Y., Kanno N., Kawai S., Mizubayashi T., Fukuoka S., Uga Y.	QTLs underlying natural variation of root growth angle among rice cultivars with the same functional allele of DEEPER ROOTING 1.	Rice (N Y)	8	16	2015		
41766	25870602	Hoang T.M., Moghaddam L., Williams B., Khanna H., Dale J., Mundree S.G.	Development of salinity tolerance in rice by constitutive-overexpression of genes involved in the regulation of programmed cell death.	Front Plant Sci	6	175	2015		
41767	25793471	Xu J., Lan H., Fang H., Huang X., Zhang H., Huang J.	Quantitative Proteomic Analysis of the Rice (Oryza sativa L.) Salt Response.	PLoS ONE	10(3)	e0120978	2015		
41768	25761674	Zhou Y., Xia X., Yu G., Wang J., Wu J., Wang M., Yang Y., Shi K., Yu Y., Chen Z., Gan J., Yu J.	Brassinosteroids play a critical role in the regulation of pesticide metabolism in crop plants.	Sci Rep	5	9018	2015		
41769	25809845	L? Y., Cui X., Li R., Huang P., Zong J., Yao D., Li G., Zhang D., Yuan Z.	Development of genome-wide insertion/deletion markers in rice based on graphic pipeline platform.	J Integr Plant Biol			2015		
41770	25780769	N??ez-L?pez L., Aguirre-Cruz A., Barrera-Figueroa BE., Pe?a-Castro JM.	Improvement of enzymatic saccharification yield in Arabidopsis thaliana by ectopic expression of the rice SUB1A-1 transcription factor.	PeerJ	3	e817	2015		
41771	25786239	Li W., Wang F., Wang J., Fan F., Zhu J., Yang J., Liu F., Zhong W.	Overexpressing CYP71Z2 enhances resistance to bacterial blight by suppressing auxin biosynthesis in rice.	PLoS ONE	10(3)	e0119867	2015		
41772	25784715	Sun H., Li J., Song W., Tao J., Huang S., Chen S., Hou M., Xu G., Zhang Y.	Nitric oxide generated by nitrate reductase increases nitrogen uptake capacity by inducing lateral root formation and inorganic nitrogen uptake under partial nitrate nutrition in rice.	J. Exp. Bot.	66(9)	2449-59	2015		
41773	25790260	Sun W., Zhou Q., Yao Y., Qiu X., Xie K., Yu S.	Identification of genomic regions and the isoamylase gene for reduced grain chalkiness in rice.	PLoS ONE	10(3)	e0122013	2015		
41774	25588693	Chakraborty A., Bhattacharjee S.	Differential competence of redox-regulatory mechanism under extremes of temperature determines growth performances and cross tolerance in two indica rice cultivars.	J. Plant Physiol.	176	65-77	2015		
41775	25834216	Zhang D., Li J., Compton R.O., Robertson J., Goff V.H., Epps E., Kong W., Kim C., Paterson A.H.	Comparative Genetics of seed size Traits in Divergent Cereal Lineages Represented by Sorghum (Panicoidae) and Rice (Oryzoidae).	G3 (Bethesda)			2015		
41776	25813048	Lee T., Oh T., Yang S., Shin J., Hwang S., Kim C.Y., Kim H., Shim H., Shim J.E., Ronald P.C., Lee I.	RiceNet v2: an improved network prioritization server for rice genes.	Nucleic Acids Res.			2015		
41777	25460871	Qian B., Li X., Liu X., Chen P., Ren C., Dai C.	Enhanced drought tolerance in transgenic rice over-expressing of maize C4 phosphoenolpyruvate carboxylase gene via NO and Ca(2+).	J. Plant Physiol.	175	9-20	2015		
41778	25822994	Luo Q., Li Y., Wang W., Fei X., Deng X.	Genome-Wide Survey and Expression Analysis of Chlamydomonas reinhardtii U-box E3 Ubiquitin Ligases (CrPUBs) Reveal a Functional Lipid Metabolism Module.	PLoS ONE	10(3)	e0122600	2015		
41779	25739330	Fan X., Wu J., Chen T., Tie W., Chen H., Zhou F., Lin Y.	Loss-of-function mutation of rice SLAC7 decreases chloroplast stability and induces a photoprotection mechanism in rice.	J Integr Plant Biol			2015	SLAC7	OsSLAC7
41780	25765580	Liu Y.K., Li Y.T., Lu C.F., Huang L.F.	Enhancement of recombinant human serum albumin in transgenic rice cell culture system by cultivation strategy.	N Biotechnol	32(3)	328-34	2015		
41781	25744417	N??ez de C?ceres Gonz?lez FF., Davey M.R., Cancho Sanchez E., Wilson Z.A.	Conferred resistance to Botrytis cinerea in Lilium by overexpression of the RCH10 chitinase gene.	Plant Cell Rep.			2015		
41782	25790283	Cho Y.I., Ahn Y.K., Tripathi S., Kim J.H., Lee H.E., Kim D.S.	Comparative Analysis of Disease-Linked Single Nucleotide Polymorphic Markers from Brassica rapa for Their Applicability to Brassica oleracea.	PLoS ONE	10(3)	e0120163	2015		
41783	25828885	Li H., Guan R., Guo H., Miao X.	New insights into an RNAi approach for plant defense against piercing-sucking and stem-borer insect pests.	Plant Cell Environ.			2015		
41784	25725011	S?nchez-Vallet A., Mesters J.R., Thomma B.P.	The battle for chitin recognition in plant-microbe interactions.	FEMS Microbiol. Rev.	39(2)	171-83	2015		
41785	25790128	Pan Y., Zhang H., Zhang D., Li J., Xiong H., Yu J., Li J., Rashid M.A., Li G., Ma X., Cao G., Han L., Li Z.	Genetic analysis of cold tolerance at the germination and booting stages in rice by association mapping.	PLoS ONE	10(3)	e0120590	2015		
41786	25762131	Takemoto-Kuno Y., Mitsueda H., Suzuki K., Hirabayashi H., Ideta O., Aoki N., Umemoto T., Ishii T., Ando I., Kato H., Nemoto H., Imbe T., Takeuchi Y.	qAC2, a novel QTL that interacts with Wx and controls the low amylose content in rice (Oryza sativa L.).	Theor. Appl. Genet.	128(4)	563-73	2015		
41787	25830863	Nath M., Garg B., Sahoo R.K., Tuteja N.	PDH45 overexpressing transgenic tobacco and rice plants provide salinity stress tolerance via less sodium accumulation.	Plant Signal Behav	10(3)	e992289	2015		
41788	25732383	Matsuno K., Fujimura T.	Do rice suspension-cultured cells treated with abscisic acid mimic developing seeds?	Mol. Genet. Genomics			2015		
41789	25828772	Li X., Lawas L.M., Malo R., Glaubitz U., Erban A., Mauleon R., Heuer S., Zuther E., Kopka J., Hincha D.K., Jagadish K.S.	Metabolic and transcriptomic signatures of rice floral organs reveal sugar starvation as a factor in reproductive failure under heat and drought stress.	Plant Cell Environ.			2015		
41790	25780993	Wei L.X., Lv B.S., Wang M.M., Ma H.Y., Yang H.Y., Liu X.L., Jiang C.J., Liang Z.W.	Priming effect of abscisic acid on alkaline stress tolerance in rice (Oryza sativa L.) seedlings.	Plant Physiol. Biochem.	90	50-7	2015		
41791	25754232	Chakraborty A., Mitra J., Bhattacharyya J., Pradhan S., Sikdar N., Das S., Chakraborty S., Kumar S., Lakhanpaul S., Sen S.K.	Transgenic expression of an unedited mitochondrial orfB gene product from wild abortive (WA) cytoplasm of rice (Oryza sativa L.) generates male sterility in fertile rice lines.	Planta	241(6)	1463-79	2015		
41792	25817414	Sekhar S., Panda B.B., Mohapatra T., Das K., Shaw B.P., Kariali E., Mohapatra P.K.	Spikelet-specific variation in ethylene production and constitutive expression of ethylene receptors and signal transducers during grain filling of compact- and lax-panicle rice (Oryza sativa) cultivars.	J. Plant Physiol.	179	21-34	2015		
41793	25815721	Xu F., Sun X., Chen Y., Huang Y., Tong C., Bao J.	Rapid Identification of Major QTLs Associated with Rice grain weight and Their Utilization.	PLoS ONE	10(3)	e0122206	2015		
41794	25809150	Kansal S., Devi R.M., Balyan S.C., Arora M.K., Singh A.K., Mathur S., Raghuvanshi S.	Unique miRNome during anthesis in drought-tolerant indica rice var. Nagina 22.	Planta	241(6)	1543-59	2015		
41795	25886904	Guo Z., Song G., Liu Z., Qu X., Chen R., Jiang D., Sun Y., Liu C., Zhu Y., Yang D.	Global epigenomic analysis indicates that epialleles contribute to Allele-specific expression via Allele-specific histone modifications in hybrid rice.	BMC Genomics	16	232	2015		
41796	25846877	Xie D.W., Wang X.N., Fu L.S., Sun J., Zheng W., Li Z.F.	Identification of the trehalose-6-phosphate synthase gene family in winter wheat and expression analysis under conditions of freezing stress.	J. Genet.	94(1)	55-65	2015		
41797	25821195	Zhang L., Wang J., Wang J., Wang L., Ma B., Zeng L., Qi Y., Li Q., He Z.	Quantitative trait locus analysis and fine mapping of the qPL6 locus for panicle length in rice.	Theor. Appl. Genet.			2015		
41798	25791479	Li L., Deng D., Chen X., Wu B., Hu K., Qiu T., Cui S., Huang F.	Expression of the moss PpLEA4-20 gene in rice enhances membrane protection and client proteins stability.	Biochem. Biophys. Res. Commun.	460(2)	386-91	2015		
41799	25809149	Bang S.W., Park S.H., Kim Y.S., Do Choi Y., Kim J.K.	The activities of four constitutively expressed promoters in single-copy transgenic rice plants for two homozygous generations.	Planta	241(6)	1529-41	2015		
41800	25754973	Zhu X., Liang W., Cui X., Chen M., Yin C., Luo Z., Zhu J., Lucas W.J., Wang Z., Zhang D.	Brassinosteroids promote development of rice pollen grains and seeds by triggering expression of Carbon Starved Anther, a MYB domain protein.	Plant J.			2015		
41801	25815594	Marzec M., Muszynska A.	In Silico Analysis of the Genes Encoding Proteins that Are Involved in the Biosynthesis of the RMS/MAX/D Pathway Revealed New Roles of Strigolactones in Plants.	Int J Mol Sci	16(4)	6757-82	2015		
41802	25728912	Byeon Y., Back K.	Molecular cloning of melatonin 2-hydroxylase responsible for 2-hydroxymelatonin production in rice (Oryza sativa).	J. Pineal Res.	58(3)	343-51	2015	2ODD17,2ODD23,2ODD28,SLC1,2ODD8,2ODD33,ODD21,2ODD13,2ODD10,2ODD15,GA2OX5,2ODD18,2ODD16,2ODD5,2ODD19,2ODD29,2ODD30,RL14,HIS1,2ODD3,2ODD20,ACO5,2ODD2,2ODD9,GA2OX9,2ODD25,2ODD26,2ODD7,2ODD34,2ODD11,2ODD27,2ODD22,S3H,2ODD6,GA2OX11	FLS, 2-ODD17, Os2-ODD17, Os2ODD17, OsFLS3, FLS3,2-ODD23, Os2-ODD23, Os2ODD23,2-ODD28, Os2-ODD28, Os2ODD28,OsSLC1, GA20OX7, OsGA20ox7, ga20ox7, 2-ODD4, Os2-ODD4, 2ODD4, Os2ODD4,2-ODD8, Os2-ODD8, Os2ODD8, OsLDOX2, LDOX2,2-ODD33, Os2-ODD33, Os2ODD33,OsSTA135, STA135, OsODD21, 2-ODD21, Os2-ODD21, Os2ODD21, M2H, OsM2H, OsF3H5, F3H5,2-ODD13, Os2-ODD13, Os2ODD13, OsHSL1, HSL1,2-ODD10, Os2-ODD10, Os2ODD10, OsF3H6, F3H6,FLS, OsFLS, 2-ODD15, Os2-ODD15, Os2ODD15, OsFLS1, FLS1,OsGA2ox5, 2-ODD32, Os2-ODD32, 2ODD32, Os2ODD32,2-ODD18, Os2-ODD18, Os2ODD18,2-ODD16, Os2-ODD16, Os2ODD16,2-ODD5, Os2-ODD5, Os2ODD5, OsLDOX1, LDOX1,OsODD19, ODD19, 2-ODD19, Os2-ODD19, Os2ODD19, OsF3H7, F3H7,2-ODD29, Os2-ODD29, Os2ODD29,2-ODD30, Os2-ODD30, Os2ODD30,2-ODD24, Os2-ODD24, 2ODD24, Os2ODD24, OsRL14,2-ODD12, Os2-ODD12, Os2ODD12, 2ODD12, OsHIS1,2-ODD3, Os2-ODD3, Os2ODD3, OsF3H04g, F3H04g, OsSAH2, SAH2, OsF3H2, F3H2, OsF3H04g/OsSAH2, OsS5H3, S5H3,2-ODD20, Os2-ODD20, Os2ODD20,OsACO5, 2-ODD14, Os2-ODD14, 2ODD14, Os2ODD14,FLS, 2-ODD2, Os2-ODD2, Os2ODD2, OsF3H, F3H, F3H2, OsF3H2, OsF3H03g, F3H03g, OsSAH1, SAH1, OsF3H1, F3H1,2-ODD9, Os2-ODD9, Os2ODD9,OsGA2ox9, GA2ox7, 2-ODD35, Os2-ODD35, 2ODD35, Os2ODD35,2-ODD25, Os2-ODD25, Os2ODD25,2-ODD26, Os2-ODD26, Os2ODD26,2-ODD7, Os2-ODD7, Os2ODD7,2-ODD34, Os2-ODD34, Os2ODD34,OsODD11, ODD11, 2-ODD11, Os2-ODD11, 2ODD11, Os2ODD11, M3H, OsM3H,2-ODD27, Os2-ODD27, Os2ODD27, OsHSL2, HSL2,2-ODD22, Os2-ODD22, Os2ODD22,OsS3H, 2-ODD1, Os2-ODD1, 2ODD1, Os2ODD1, OsSAH3, SAH3, OsS3H/OsSAH3, OsS5H1, S5H1,2-ODD6, Os2-ODD6, Os2ODD6, OsLDOX3, LDOX3,OsGA2ox11, 2-ODD31, Os2-ODD31, 2ODD31, Os2ODD31
41803	25732533	G?mez-Ariza J., Galbiati F., Goretti D., Brambilla V., Shrestha R., Pappolla A., Courtois B., Fornara F.	Loss of floral repressor function adapts rice to higher latitudes in Europe.	J. Exp. Bot.	66(7)	2027-39	2015		
41804	25824104	Zhou J., Peng Z., Long J., Sosso D., Liu B., Eom J.S., Huang S., Liu S., Cruz C.V., Frommer W.B., White F.F., Yang B.	Gene targeting by the TAL effector PthXo2 reveals cryptic resistance gene for bacterial blight of rice.	Plant J.			2015		
41805	25867379	Liu H.H., Wang Y.G., Wang S.P., Li H.J.	Cloning and characterization of peanut allene oxide cyclase gene involved in salt-stressed responses.	Genet. Mol. Res.	14(1)	2331-40	2015		
41806	25768901	Manishankar P., Kudla J.	cold tolerance encoded in one SNP.	Cell	160(6)	1045-6	2015		
41807	25774106	Singh A.K., Singh P.K., Arya M., Singh N.K., Singh U.S.	Molecular Screening of Blast Resistance Genes in Rice using SSR Markers.	Plant Pathol. J.	31(1)	12-24	2015		
41808	25822501	Bu S.H., Xinwang Z., Yi C., Wen J., Jinxing T., Zhang Y.M.	Interacted QTL Mapping in Partial NCII Design Provides Evidences for Breeding by Design.	PLoS ONE	10(3)	e0121034	2015		
41809	25913114	Han X., Wan C., Li X., Li H., Yang D., Du S., Xiao Y., Qin Z.	Synthesis and bioactivity of 2',3'-benzoabscisic acid analogs.	Bioorg. Med. Chem. Lett.			2015		
41810	25818072	Lima J.M., Nath M., Dokku P., Raman K.V., Kulkarni K.P., Vishwakarma C., Sahoo S.P., Mohapatra U.B., Amitha Mithra SV., Chinnusamy V., Robin S., Sarla N., Seshashayee M., Singh K., Singh A.K., Singh N.K., Sharma R.P., Mohapatra T.	Physiological, anatomical and transcriptional alterations in a rice mutant leading to enhanced water stress tolerance.	AoB Plants			2015		
41811	25879964	Cho J., Jung T., Kim J., Song S., Ko J., Woo K., Lee J., Choe M., Oh I.	Development of a Waxy gene real-time PCR assay for the quantification of sorghum Waxy grain in mixed cereal products.	BMC Biotechnol.	15(1)	20	2015		
41812	25897471	Mostofa M.G., Seraj Z.I., Fujita M.	Interactive effects of nitric oxide and glutathione in mitigating copper toxicity of rice (Oryza sativa L.) seedlings.	Plant Signal Behav	10(3)	e991570	2015		
41813	25789629	Liu E., Liu X., Zeng S., Zhao K., Zhu C., Liu Y., Breria M.C., Zhang B., Hong D.	Time-course association mapping of the grain-filling rate in rice (Oryza sativa L.).	PLoS ONE	10(3)	e0119959	2015		
41814	25807168	Bimolata W., Kumar A., M SK., Sundaram R.M., Laha G.S., Qureshi I.A., Ghazi I.A.	Nucleotide diversity analysis of three major bacterial blight resistance genes in rice.	PLoS ONE	10(3)	e0120186	2015		
41815	25747843	Wang Q., Xie W., Xing H., Yan J., Meng X., Li X., Fu X., Xu J., Lian X., Yu S., Xing Y., Wang G.	Genetic Architecture of Natural Variation in Rice chlorophyll content Revealed by a Genome-Wide Association Study.	Mol Plant			2015		
41816	25690040	Sun L., Huang L., Hong Y., Zhang H., Song F., Li D.	Comprehensive analysis suggests overlapping expression of rice ONAC transcription factors in abiotic and biotic stress responses.	Int J Mol Sci	16(2)	4306-26	2015		
41817	25697955	Dhadi S.R., Xu Z., Shaik R., Driscoll K., Ramakrishna W.	Differential regulation of genes by retrotransposons in rice promoters.	Plant Mol. Biol.	87(6)	603-13	2015		
41818	25732386	Hamdani S., Qu M., Xin C.P., Li M., Chu C., Govindjee, Zhu X.G.	Variations between the photosynthetic properties of elite and landrace Chinese rice cultivars revealed by simultaneous measurements of 820nm transmission signal and chlorophyll a fluorescence induction.	J. Plant Physiol.	177	128-38	2015		
41819	25755661	Behringer C., Schwechheimer C.	B-GATA transcription factors - insights into their structure, regulation, and role in plant development.	Front Plant Sci	6	90	2015	GATA10,GATA13,GATA9,_,CGA1,GATA16,GATA12,GATA8,NL1	OsGATA10,OsGATA13,OsGATA9,OsGATA8, GATA8, OsGATA14, GATA14,Cga1, OsCga1, OsCGA1, OsGATA11, GATA11,OsGATA16, OsGNC, GNC,OsGATA12,OsGATA8, OsGATA14, GATA14, OsGATA8a, OsGATA8b, DLN10, OsDLN10,nl1, OsGATA15, GATA15, OsNL1
41820	25888265	Mohanta T.K., Arora P.K., Mohanta N., Parida P., Bae H.	Identification of new members of the MAPK gene family in plants shows diverse conserved domains and novel activation loop variants.	BMC Genomics	16	58	2015		
41821	25815311	Cui J., Zhang Z., Shao Y., Zhang K., Leng P., Liang Z.	Genome-wide identification, evolutionary, and expression analyses of histone h3 variants in plants.	Biomed Res Int	2015	341598	2015		
41822	25644581	Zeng X., Tian D., Gu K., Zhou Z., Yang X., Luo Y., White F.F., Yin Z.	Genetic engineering of the Xa10 promoter for broad-spectrum and durable resistance to Xanthomonas oryzae pv. oryzae.	Plant Biotechnol. J.			2015		
41823	25844116	Jiang J., Mou T., Yu H., Zhou F.	Molecular breeding of thermo-sensitive genic male sterile (TGMS) lines of rice for blast resistance using Pi2 gene.	Rice (N Y)	8	11	2015		
41824	25713176	Umehara M., Cao M., Akiyama K., Akatsu T., Seto Y., Hanada A., Li W., Takeda-Kamiya N., Morimoto Y., Yamaguchi S.	Structural Requirements of Strigolactones for shoot branching Inhibition in Rice and Arabidopsis.	Plant Cell Physiol.			2015		
41825	25663113	Mukherjee K., Pandey D.M., Vidyarthi A.S.	In silico characterization and analysis of RTBP1 and NgTRF1 protein through MD simulation and molecular docking - A comparative study.	Interdiscip Sci			2015		
41826	25887533	Hu J., Chen X., Zhang H., Ding Y.	Genome-wide analysis of DNA methylation in photoperiod- and thermo-sensitive male sterile rice Peiai 64S.	BMC Genomics	16	102	2015	BHLH31	OsbHLH031, bHLH031, bHLH31, BIM2, OsBIM2
41827	25658451	Liu J., Park C.H., He F., Nagano M., Wang M., Bellizzi M., Zhang K., Zeng X., Liu W., Ning Y., Kawano Y., Wang G.L.	The RhoGAP Spin6 associates with SPL11 and OsRac1 and negatively regulates programmed cell death and innate immunity in rice.	PLoS Pathog.	11(2)	e1004629	2015	RAC1,_,SGT1,RAR1,_,_,SPL11	OsRAC1, OsRac1, Os Rac1, Rac1, Os-Rac1,SPIN6, Spin6, SIP11 ,OsSgt1, OsSGT1, Os SGT1,Os RAR1, OsRAR1,Spin6.2,Spin6.3,spl11, spl11*, OsPUB11, PUB11,  OsPUB11/SPL11, PUB11/SPL11
41828	25648443	Kumar A., Bimolata W., Kannan M., Kirti P.B., Qureshi I.A., Ghazi I.A.	Comparative proteomics reveals differential induction of both biotic and abiotic stress response associated proteins in rice during Xanthomonas oryzae pv. oryzae infection.	Funct. Integr. Genomics			2015		
41829	25735982	Phung T.H., Jung S.	Differential antioxidant defense and detoxification mechanisms in photodynamically stressed rice plants treated with the deregulators of porphyrin biosynthesis, 5-aminolevulinic acid and oxyfluorfen.	Biochem. Biophys. Res. Commun.	459(2)	346-51	2015		
41830	25658704	Jiang D., Fang J., Lou L., Zhao J., Yuan S., Yin L., Sun W., Peng L., Guo B., Li X.	Characterization of a null allelic mutant of the rice nal1 gene reveals its role in regulating cell division.	PLoS ONE	10(2)	e0118169	2015		
41831	25804816	Paul S., Gayen D., Datta S.K., Datta K.	Dissecting root proteome of transgenic rice cultivars unravels metabolic alterations and accumulation of novel stress responsive proteins under drought stress.	Plant Sci.	234	133-43	2015		
41832	25728666	Ma Y., Dai X., Xu Y., Luo W., Zheng X., Zeng D., Pan Y., Lin X., Liu H., Zhang D., Xiao J., Guo X., Xu S., Niu Y., Jin J., Zhang H., Xu X., Li L., Wang W., Qian Q., Ge S., Chong K.	COLD1 confers chilling tolerance in rice.	Cell	160(6)	1209-21	2015	COLD1,COLD2,COLD3,D1,COLD4,COLD5	OsCOLD1,,,d1, GPA1, GA1, OsGA1, RGA1, dwf1, XA7, RGA, D1/RGA1, D89, TGW5, OsTGW5, SRG5, OsSRG5,,
41833	25730062	Li J.B., Sun Y.D., Liu H., Wang Y.Y., Jia Y.L., Xu M.H.	Natural variation of rice blast resistance gene Pi-d2.	Genet. Mol. Res.	14(1)	1235-49	2015		
41834	25659573	Wu J., Kou Y., Bao J., Li Y., Tang M., Zhu X., Ponaya A., Xiao G., Li J., Li C., Song M.Y., Cumagun C.J., Deng Q., Lu G., Jeon J.S., Naqvi N.I., Zhou B.	Comparative genomics identifies the Magnaporthe oryzae avirulence effector AvrPi9 that triggers Pi9-mediated blast resistance in rice.	New Phytol.	206(4)	1463-75	2015		
41835	25674802	Han Y., Wang R., Yang Z., Zhan Y., Ma Y., Ping S., Zhang L., Lin M., Yan Y.	1-aminocyclopropane-1-carboxylate deaminase from Pseudomonas stutzeri A1501 facilitates the growth of rice in the presence of salt or heavy metals.	J. Microbiol. Biotechnol.			2015		
41836	25657119	Ruan W., Guo M., Cai L., Hu H., Li C., Liu Y., Wu Z., Mao C., Yi K., Wu P., Mo X.	Genetic manipulation of a high-affinity PHR1 target cis-element to improve phosphorous uptake in Oryza sativa L.	Plant Mol. Biol.	87(4-5)	429-40	2015		
41837	25752430	Ge L.Q., Sun Y.C., Ouyang F., Wu J.C., Ge F.	The effects of triazophos applied to transgenic Bt rice on the nutritional indexes, Nlvg expression, and population growth of Nilaparvata lugens St?l under elevated CO?.	Pestic Biochem Physiol	118	50-7	2015		
41838	25638043	Charfeddine S., Sa?di MN., Charfeddine M., Gargouri-Bouzid R.	Genome-wide identification and expression profiling of the late embryogenesis abundant genes in potato with emphasis on dehydrins.	Mol. Biol. Rep.			2015		
41839	25651892	Xie S., Wu H., Chen L., Zang H., Xie Y., Gao X.	Transcriptome profiling of Bacillus subtilis OKB105 in response to rice seedlings.	BMC Microbiol.	15(1)	21	2015		
41840	25719552	Zhang Y.K., Zhu D.F., Zhang Y.P., Chen H.Z., Xiang J., Lin X.Q.	Low pH-induced changes of antioxidant enzyme and ATPase activities in the roots of rice (Oryza sativa L.) seedlings.	PLoS ONE	10(2)	e0116971	2015		
41841	25647350	Yan D., Zhang X., Zhang L., Ye S., Zeng L., Liu J., Li Q., He Z.	CURVED CHIMERIC PALEA 1 encoding an EMF1-like protein maintains epigenetic repression of OsMADS58 in rice palea development.	Plant J.	82(1)	12-24	2015	D61,_,MADS58,MSI1,CCP1	d61*, dwf42, d61, OsBRI1, OSBRI1, BRI1, Os BRI1, Osbri1, OsBRKq1, BRKq1,,  OsRING331, RING331,OsMADS58,OsWD40-79, OsMSI1, WD40-79,  OsDWD1, DWD1,DFO1, EMF1, OsDFO1, OsEMF1, OsCCP1
41842	25647327	Yan J., Guan L., Sun Y., Zhu Y., Liu L., Lu R., Jiang M., Tan M., Zhang A.	Calcium and ZmCCaMK are involved in brassinosteroid-induced antioxidant defense in maize leaves.	Plant Cell Physiol.	56(5)	883-96	2015		
41843	25667114	Kamau P.K., Sano S., Takami T., Matsushima R., Maekawa M., Sakamoto W.	A Mutation in GIANT CHLOROPLAST Encoding a PARC6 Homolog Affects Spikelet Fertility in Rice.	Plant Cell Physiol.	56(5)	977-91	2015		
41844	25844113	Uga Y., Kitomi Y., Yamamoto E., Kanno N., Kawai S., Mizubayashi T., Fukuoka S.	A QTL for root growth angle on rice chromosome 7 is involved in the genetic pathway of DEEPER ROOTING 1.	Rice (N Y)	8	8	2015		
41845	25650179	Xia C.F., Lv L., Chen X.Y., Fu B.Q., Lei K.L., Qin C.Q., Liu Y.	Nd(III)-Induced Rice Mitochondrial Dysfunction Investigated by Spectroscopic and Microscopic Methods.	J. Membr. Biol.	248(2)	319-26	2015		
41846	25690516	Khaliq A., Aslam F., Matloob A., Hussain S., Geng M., Wahid A., Ur Rehman H.	Seed Priming with Selenium: Consequences for Emergence, Seedling Growth, and Biochemical Attributes of Rice.	Biol Trace Elem Res			2015		
41847	25850033	Andolfo G., Ruocco M., Di Donato A., Frusciante L., Lorito M., Scala F., Ercolano M.R.	Genetic variability and evolutionary diversification of membrane ABC transporters in plants.	BMC Plant Biol.	15	51	2015		
41848	25684654	Chen R., Shen L.P., Wang D.H., Wang F.G., Zeng H.Y., Chen Z.S., Peng Y.B., Lin Y.N., Tang X., Deng M.H., Yao N., Luo J.C., Xu Z.H., Bai S.N.	A Gene Expression Profiling of Early Rice Stamen Development that Reveals Inhibition of Photosynthetic Genes by OsMADS58.	Mol Plant			2015		
41849	25717036	Morita R., Sugino M., Hatanaka T., Misoo S., Fukayama H.	CO2-Responsive CONSTANS, CONSTANS-Like, and Time of Chlorophyll a/b Binding Protein Expression1 Protein Is a Positive Regulator of Starch Synthesis in Vegetative Organs of Rice.	Plant Physiol.	167(4)	1321-31	2015	GPT2,SBE1,PUL,GBSSII,AGPS1,AGPL3,NRR,SSI,SBE4,PHO1	OsGPT2,sbe1, Rbe1. Sbe1, sbe1*(QEI), RBE1, BEI, SBE I, QEI, OsBEI, BE1, OsSBE1, OsSBEI, SBEI,OsPUL, SDBE, OsPUL3, RE,GBSS2, OsGBSSII, OsGBSS2,OsAGPS1, APS1, OsAPS1, AGPsma,OsAGPL3, APL3, OsAPL3, AGPlar, OsAGPL1, AGPL1,OsNRR, NRRa, NRRb, OsCCT18, OsCMF6,  CCT18, CMF6, CRCT, OsCRCT,OsSSI, SSS 1, SSS1, SS1, OsSS1, SSSI, OsSSSI,RBE4, OsSBE4, BEIIa, QEIIb, BEIIA, OsBEIIa,Pho1, OsPho1, OsPHOL, PHOL, OsPHOI, PHOI
41850	25682587	Sarkar A., Singh A.A., Agrawal S.B., Ahmad A., Rai S.P.	Cultivar specific variations in antioxidative defense system, genome and proteome of two tropical rice cultivars against ambient and elevated ozone.	Ecotoxicol. Environ. Saf.	115	101-11	2015		
41851	25888360	Jin T., Chen J., Zhu L., Zhao Y., Guo J., Huang Y.	Comparative mapping combined with homology-based cloning of the rice genome reveals candidate genes for grain zinc and iron concentration in maize.	BMC Genet.	16	17	2015		
41852	25730074	Kwon S.J., Yu J., Park Y.J., Son J.H., Kim N.S., Lee J.K.	Genetic analysis of seed-shattering genes in rice using an F3:4 population derived from an Oryza sativa x Oryza rufipogon cross.	Genet. Mol. Res.	14(1)	1347-61	2015		
41853	25844112	Ruengphayak S., Chaichumpoo E., Phromphan S., Kamolsukyunyong W., Sukhaket W., Phuvanartnarubal E., Korinsak S., Korinsak S., Vanavichit A.	Pseudo-backcrossing design for rapidly pyramiding multiple traits into a preferential rice variety.	Rice (N Y)	8	7	2015		
41854	25687128	Sasaki K., Takeuchi Y., Miura K., Yamaguchi T., Ando T., Ebitani T., Higashitani A., Yamaya T., Yano M., Sato T.	Fine mapping of a major quantitative trait locus, qLG-9, that controls seed longevity in rice (Oryza sativa L.).	Theor. Appl. Genet.	128(4)	769-78	2015		
41855	25650828	Ma J., Lei C., Xu X., Hao K., Wang J., Cheng Z., Ma X., Ma J., Zhou K., Zhang X., Guo X., Wu F., Lin Q., Wang C., Zhai H., Wang H., Wan J.	Pi64, encoding a novel CC-NBS-LRR protein, confers resistance to leaf and neck blast in rice.	Mol. Plant Microbe Interact.			2015	PI64	Pi64
41856	25680791	Henry A., Swamy B.P., Dixit S., Torres R.D., Batoto T.C., Manalili M., Anantha M.S., Mandal N.P., Kumar A.	Physiological mechanisms contributing to the QTL-combination effects on improved performance of IR64 rice NILs under drought.	J. Exp. Bot.	66(7)	1787-99	2015		
41857	25755666	Pourabed E., Jazayeri Noushabadi MR., Jamali S.H., Moheb Alipour N., Zareyan A., Sadeghi L.	Identification and DUS Testing of Rice Varieties through Microsatellite Markers.	Int J Plant Genomics	2015	965073	2015		
41858	25658309	Wu Z., Tembrock L.R., Ge S.	Are differences in genomic data sets due to true biological variants or errors in genome assembly: an example from two chloroplast genomes.	PLoS ONE	10(2)	e0118019	2015		
41859	25849155	Tripathi A.K., Singh K., Pareek A., Singla-Pareek SL.	Histone chaperones in Arabidopsis and rice: genome-wide identification, phylogeny, architecture and transcriptional regulation.	BMC Plant Biol.	15	42	2015		
41860	25727092	Liang X., Yu X., Dong W., Guo S., Xu S., Wang J., Zhou M.	Two thiadiazole compounds promote rice defence against Xanthomonas oryzae pv. oryzae by suppressing the bacterium's production of extracellular polysaccharides.	Mol. Plant Pathol.			2015		
41861	25644466	Lu H.P., Edwards M., Wang Q.Z., Zhao H.J., Fu H.W., Huang J.Z., Gatehouse A., Shu Q.Y.	Expression of cytochrome P450 CYP81A6 in rice: tissue specificity, protein subcellular localization, and response to herbicide application.	J Zhejiang Univ Sci B	16(2)	113-22	2015		
41862	25730034	Zhao L., Liu H.J., Zhang C.X., Wang Q.Y., Li X.H.	Meta-analysis of constitutive QTLs for disease resistance in maize and its synteny conservation in the rice genome.	Genet. Mol. Res.	14(1)	961-70	2015		
41863	25688565	Wu J., Yang Z., Wang Y., Zheng L., Ye R., Ji Y., Zhao S., Ji S., Liu R., Xu L., Zheng H., Zhou Y., Zhang X., Cao X., Xie L., Wu Z., Qi Y., Li Y.	Viral-inducible Argonaute18 confers broad-spectrum virus resistance in rice by sequestering a host microRNA.	Elife	4		2015	AGO1A,AGO18,AGO1C,AGO1B,AGO1D	OsAGO1a, AGO1a, AGO10, AGO1-1 ,OsAGO18,OsAGO1c, OsAGO1, AGO1, AGO1c,OsAGO1b, AGO1b, AGO1-2 ,OsAGO1d, AGO1d
41864	25699072	Hussain A., Shah S.T., Rahman H., Irshad M., Iqbal A.	Effect of IAA on in vitro growth and colonization of Nostoc in plant roots.	Front Plant Sci	6	46	2015		
41865	25725409	Wang Z.M., Li H.X., Liu X.F., He Y., Zeng H.L.	Reduction of pyruvate orthophosphate dikinase activity is associated with high temperature-induced chalkiness in rice grains.	Plant Physiol. Biochem.	89	76-84	2015		
41866	25688911	Li S., Wang Y., Wang S., Fang A., Wang J., Liu L., Zhang K., Mao Y., Sun W.	The Type III Effector AvrBs2 in Xanthomonas oryzae pv. oryzicola Suppresses Rice Immunity and Promotes Disease Development Running title: AvrBs2 in Xoc suppresses rice immunity.	Mol. Plant Microbe Interact.			2015		
41867	25849162	Wang J., Qu B., Dou S., Li L., Yin D., Pang Z., Zhou Z., Tian M., Liu G., Xie Q., Tang D., Chen X., Zhu L.	The E3 ligase OsPUB15 interacts with the receptor-like kinase PID2 and regulates plant cell death and innate immunity.	BMC Plant Biol.	15	49	2015		
41868	25844117	Yan H., Ma L., Wang Z., Lin Z., Su J., Lu B.R.	Multiple tissue-specific expression of rice seed-shattering gene SH4 regulated by its promoter pSH4.	Rice (N Y)	8	12	2015		
41869	25804805	Ding L., Gao C., Li Y., Li Y., Zhu Y., Xu G., Shen Q., Kaldenhoff R., Kai L., Guo S.	The enhanced drought tolerance of rice plants under ammonium is related to aquaporin (AQP).	Plant Sci.	234	14-21	2015		
41870	25673476	Sakurai G., Satake A., Yamaji N., Mitani-Ueno N., Yokozawa M., Feugier F.G., Ma J.F.	In silico simulation modeling reveals the importance of the casparian strip for efficient silicon uptake in rice roots.	Plant Cell Physiol.	56(4)	631-9	2015		
41871	25844118	Finatto T., de Oliveira AC., Chaparro C., da Maia LC., Farias D.R., Woyann L.G., Mistura C.C., Soares-Bresolin AP., Llauro C., Panaud O., Picault N.	Abiotic stress and genome dynamics: specific genes and transposable elements response to iron excess in rice.	Rice (N Y)	8	13	2015		
41872	25462966	Okishio T., Sasayama D., Hirano T., Akimoto M., Itoh K., Azuma T.	Ethylene is not involved in adaptive responses to flooding in the Amazonian wild rice species Oryza grandiglumis.	J. Plant Physiol.	174	49-54	2015		
41873	25765300	Yuan S., Xu B., Zhang J., Xie Z., Cheng Q., Yang Z., Cai Q., Huang B.	Comprehensive analysis of CCCH-type zinc finger family genes facilitates functional gene discovery and reflects recent allopolyploidization event in tetraploid switchgrass.	BMC Genomics	16	129	2015		
41874	25741357	Todaka D., Shinozaki K., Yamaguchi-Shinozaki K.	Recent advances in the dissection of drought-stress regulatory networks and strategies for development of drought-tolerant transgenic rice plants.	Front Plant Sci	6	84	2015		
41875	25700981	Wang Y., Zeng H., Zhou X., Huang F., Peng W., Liu L., Xiong W., Shi X., Luo M.	Transformation of rice with large maize genomic DNA fragments containing high content repetitive sequences.	Plant Cell Rep.			2015		
41876	25689273	Spindel J., Begum H., Akdemir D., Virk P., Collard B., Redo?a E., Atlin G., Jannink J.L., McCouch S.R.	Genomic selection and association mapping in rice (Oryza sativa): effect of trait genetic architecture, training population composition, marker number and statistical model on accuracy of rice genomic selection in elite, tropical rice breeding lines.	PLoS Genet.	11(2)	e1004982	2015		
41877	25447356	Azizi P., Rafii M.Y., Maziah M., Abdullah S.N., Hanafi M.M., Latif M.A., Rashid A.A., Sahebi M.	Understanding the shoot apical meristem regulation: a study of the phytohormones, auxin and cytokinin, in rice.	Mech. Dev.	135	1-15	2015		
41878	25705117	Arbelaez J.D., Moreno L.T., Singh N., Tung C.W., Maron L.G., Ospina Y., Martinez C.P., Grenier C., Lorieux M., McCouch S.	Development and GBS-genotyping of introgression lines (ILs) using two wild species of rice, O. meridionalis and O. rufipogon, in a common recurrent parent, O.sativa cv. Curinga.	Mol. Breed.	35(2)	81			
41879	25710173	Guo Y., Zhu C., Gan L., Ng D., Xia K.	Effects of exogenous gibberellic acid3 on iron and manganese plaque amounts and iron and manganese uptake in rice.	PLoS ONE	10(2)	e0118177	2015		
41880	25667113	Fujimaki S., Maruyama T., Suzui N., Kawachi N., Miwa E., Higuchi K.	Base to Tip and Long-Distance Transport of Sodium in the Root of Common Reed [Phragmites australis (Cav.) Trin. ex Steud.] at Steady State Under Constant High-Salt Conditions.	Plant Cell Physiol.	56(5)	943-50	2015		
41881	25300838	Hiei Y., Ishida Y., Komari T.	Rice, indica (Oryza sativa L.).	Methods Mol. Biol.	1223	155-67	2015		
41882	25585673	Yap A., Kindgren P., Colas des Francs-Small C., Kazama T., Tanz S.K., Toriyama K., Small I.	AEF1/MPR25 is implicated in RNA editing of plastid atpF and mitochondrial nad5 and also promotes atpF splicing in Arabidopsis and rice.	Plant J.			2015		
41883	25586315	Vega-S?nchez ME., Loqu? D., Lao J., Catena M., Verhertbruggen Y., Herter T., Yang F., Harholt J., Ebert B., Baidoo E.E., Keasling J.D., Scheller H.V., Heazlewood J.L., Ronald P.C.	Engineering temporal accumulation of a low recalcitrance polysaccharide leads to increased C6 sugar content in plant cell walls.	Plant Biotechnol. J.			2015		
41884	25480005	Li Y., Zhang J., Zhang X., Fan H., Gu M., Qu H., Xu G.	Phosphate transporter OsPht1;8 in rice plays an important role in phosphorus redistribution from source to sink organs and allocation between embryo and endosperm of seeds.	Plant Sci.	230	23-32	2015		
41885	25586098	Shiraya T., Mori T., Maruyama T., Sasaki M., Takamatsu T., Oikawa K., Itoh K., Kaneko K., Ichikawa H., Mitsui T.	Golgi/plastid-type manganese Superoxide dismutase involved in heat-stress tolerance during grain filling of rice.	Plant Biotechnol. J.			2015		
41886	25480003	Tianpei X., Li D., Qiu P., Luo J., Zhu Y., Li S.	Scorpion peptide LqhIT2 activates phenylpropanoid pathways via jasmonate to increase rice resistance to rice leafrollers.	Plant Sci.	230	1-11	2015		
41887	25581614	Taniguchi M., Ochiai A., Takahashi K., Nakamichi S.I., Nomoto T., Saitoh E., Kato T., Tanaka T.	Antimicrobial activity and mechanism of action of a novel cationic alpha-helical octadecapeptide derived from alpha-amylase of rice.	Biopolymers			2015		
41888	25567127	Li Y., Zhang X., Chen X., Romeis J., Yin X., Peng Y.	Consumption of Bt rice pollen containing Cry1C or Cry2A does not pose a risk to Propylea japonica (Thunberg) (Coleoptera: Coccinellidae).	Sci Rep	5	7679	2015		
41889	25461700	Hu Y., Lai Y.	Identification and expression analysis of rice histone genes.	Plant Physiol. Biochem.	86	55-65	2015	_,_	HTA705,HTA713 
41890	25559339	Sutoh K., Washio K., Imai R., Wada M., Nakai T., Yamauchi D.	An N-terminal region of a Myb-like protein is involved in its intracellular localization and activation of a gibberellin-inducible proteinase gene in germinated rice seeds.	Biosci. Biotechnol. Biochem.		1-13	2015		
41891	25599829	Shan Q., Zhang Y., Chen K., Zhang K., Gao C.	Creation of fragrant rice by targeted knockout of the OsBADH2 gene using TALEN technology.	Plant Biotechnol. J.			2015		
41892	25619895	Chen H.W., Shao K.H., Wang S.J.	Light-modulated seminal wavy roots in rice mediated by nitric oxide-dependent signaling.	Protoplasma			2015		
41893	25624395	Cheng H., Liu H., Deng Y., Xiao J., Li X., Wang S.	The WRKY45-2 WRKY13 WRKY42 transcriptional regulatory cascade is required for rice resistance to fungal pathogen.	Plant Physiol.	167(3)	1087-99	2015		
41894	25605006	Cui X., Wei Y., Wang Y.H., Li J., Wong F.L., Zheng Y.J., Yan H., Liu S.S., Liu J.L., Jia B.L., Zhang S.H.	Proteins interacting with mitochondrial ATP-dependent Lon protease (MAP1) in Magnaporthe oryzae are involved in rice blast disease.	Mol. Plant Pathol.			2015		
41895	25614066	Kadam N.N., Yin X., Bindraban P.S., Struik P.C., Jagadish K.S.	Does Morphological and Anatomical Plasticity during the Vegetative Stage Make Wheat More Tolerant of Water Deficit Stress Than Rice?	Plant Physiol.	167(4)	1389-401	2015		
41896	25642300	Yang Z., Ma H., Hong H., Yao W., Xie W., Xiao J., Li X., Wang S.	Transcriptome-based analysis of mitogen-activated protein kinase cascades in the rice response to Xanthomonas oryzae infection.	Rice (N Y)	8	4	2015		
41897	25653654	Zhao J., Zhang J., Zhang W., Wu K., Zheng F., Tian L., Liu X., Duan J.	Expression and functional analysis of the plant-specific histone deacetylase HDT701 in rice.	Front Plant Sci	5	764	2014		
41898	25636202	Gao Y., Jiang W., Dai Y., Xiao N., Zhang C., Li H., Lu Y., Wu M., Tao X., Deng D., Chen J.	A maize Phytochrome-interacting factor 3 improves drought and salt stress tolerance in rice.	Plant Mol. Biol.	87(4-5)	413-28	2015		
41899	25605284	Xu J., Zhou L., Venturi V., He Y.W., Kojima M., Sakakibari H., H?fte M., De Vleesschauwer D.	Phytohormone-mediated interkingdom signaling shapes the outcome of rice-Xanthomonas oryzae pv. oryzae interactions.	BMC Plant Biol.	15	10	2015		
41900	25624002	Mani N., Ramakrishna K., Suguna K.	Characterization of rice small heat shock proteins targeted to different cellular organelles.	Cell Stress Chaperones	20(3)	451-60	2015		
41901	25616007	Zhu D.W., Zhong H., Zeng Q.L., Yin Y.	Prediction of methylmercury accumulation in rice grains by chemical extraction methods.	Environ. Pollut.	199	1-9	2015		
41902	25637374	Kurotani K., Hayashi K., Hatanaka S., Toda Y., Ogawa D., Ichikawa H., Ishimaru Y., Tashita R., Suzuki T., Ueda M., Hattori T., Takeda S.	Elevated Levels of CYP94 Family Gene Expression Alleviate the Jasmonate Response and Enhance salt tolerance in Rice.	Plant Cell Physiol.	56(4)	779-89	2015		
41903	25645894	Ma J., Cai H., He C., Zhang W., Wang L.	A hemicellulose-bound form of silicon inhibits cadmium ion uptake in rice (Oryza sativa) cells.	New Phytol.	206(3)	1063-74	2015		
41904	25646153	Gopalakrishnan S., Srinivas V., Alekhya G., Prakash B., Kudapa H., Rathore A., Varshney R.K.	The extent of grain yield and plant growth enhancement by plant growth-promoting broad-spectrum Streptomyces sp. in chickpea.	Springerplus	4	31	2015		
41905	25634987	Mandadi K.K., Scholthof K.B.	Genome-wide analysis of alternative splicing landscapes modulated during plant-virus interactions in Brachypodium distachyon.	Plant Cell	27(1)	71-85	2015		
41906	25621512	Al-Babili S., Bouwmeester H.J.	Strigolactones, a novel carotenoid-derived plant hormone.	Annu Rev Plant Biol	66	161-86	2015		
41907	25655560	Dehury B., Maharana J., Sahoo B.R., Sahu J., Sen P., Modi M.K., Barooah M.	Molecular recognition of avirulence protein (avrxa5) by eukaryotic transcription factor xa5 of rice (Oryza sativa L.): insights from molecular dynamics simulations.	J. Mol. Graph. Model.	57	49-61	2015		
41908	25615266	Xiong J., Yang Y., Fu G., Tao L.	Novel roles of hydrogen peroxide (H?O?) in regulating pectin synthesis and demethylesterification in the cell wall of rice (Oryza sativa) root tips.	New Phytol.	206(1)	118-26	2015		
41909	25627217	Lu J., Robert C.A., Riemann M., Cosme M., M?ne-Saffran? L., Massana J., Stout M.J., Lou Y., Gershenzon J., Erb M.	Induced jasmonate signaling leads to contrasting effects on root damage and herbivore performance.	Plant Physiol.	167(3)	1100-16	2015		
41910	25620876	Mizobuchi R., Sato H., Fukuoka S., Tsushima S., Yano M.	Fine mapping of RBG2, a quantitative trait locus for resistance to Burkholderia glumae, on rice chromosome 1.	Mol. Breed.	35	15			
41911	25643735	Verma V., Sivaraman J., Srivastava A.K., Sadanandom A., Kumar P.P.	Destabilization of interaction between cytokinin signaling intermediates AHP1 and ARR4 modulates Arabidopsis development.	New Phytol.	206(2)	726-37	2015		
41912	25607985	Holton N., Nekrasov V., Ronald P.C., Zipfel C.	The phylogenetically-related pattern recognition receptors EFR and XA21 recruit similar immune signaling components in monocots and dicots.	PLoS Pathog.	11(1)	e1004602	2015		
41913	25576299	Huang J., Hu R., Qiao F., Yin Y., Liu H., Huang Z.	Impact of insect-resistant GM rice on pesticide use and farmers' health in China.	Sci China Life Sci			2015		
41914	25582220	Zhang F., Wang L., Wang R., Ying Y., Wu J.	Simple Screening Strategy with Only Water Bath Needed for the Identification of Insect-resistant Genetically Modified Rice.	Anal. Chem.			2015		
41915	25587938	Rico C.M., Peralta-Videa JR., Gardea-Torresdey JL.	Differential Effects of Cerium Oxide Nanoparticles on Rice, Wheat, and Barley Roots: A Fourier Transform Infrared (FT-IR) Microspectroscopy Study.	Appl Spectrosc			2015		
41916	25928563	Liao J.L., Zhou H.W., Peng Q., Zhong P.A., Zhang H.Y., He C., Huang Y.J.	Transcriptome changes in rice (Oryza sativa L.) in response to high night temperature stress at the early milky stage.	BMC Genomics	16	18	2015		
41917	25627243	Kumar V., Singh A., Mithra S.V., Krishnamurthy S.L., Parida S.K., Jain S., Tiwari K.K., Kumar P., Rao A.R., Sharma S.K., Khurana J.P., Singh N.K., Mohapatra T.	Genome-wide association mapping of salinity tolerance in rice (Oryza sativa).	DNA Res.	22(2)	133-45	2015		
41918	23028921	Cockram J., Thiel T., Steuernagel B., Stein N., Taudien S., Paul C Bailey, Donal M O'Sullivan	Genome dynamics explain the evolution of flowering time CCT domain gene families in the Poaceae.	PLoS ONE	7(9)	e45307	2012	SE1,BBX9,GHD7,BBX12,_,PRR73,BBX23,COL4,CCT36,BBX7,_,CCT25,DHD4,DTH2,CCT17,CCT1,CMF3,CMF14,CCT39,PRR95,CMF11,HD2,CCT10,NRR,TOC1,PRR59,BBX15,BBX10,BBX25,BBX20,BBX3,CO3,BBX17,BBX8,BBX28,COL15	Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, OsHd1,  Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,OsP, OsBBX9, OsCCT12, CCT12,Ghd2, Ghd7, OsGhd7, OsCCT26, OsCMF8, OsI, Ghd7/Hd4, Hd4, EH7-1/Hd4, Ghd7-0a, EH7-1, EH7/Ghd7, EH7, OsEH7, GLW7.1, OsGLW7.1,OsBBX12, OsC, OsCCT16, CCT16,OsCCT34, OsCMF10, CO9,OsPRR73, Os-PRR73, Prr3, OsPRR3, OsRRA20, OsCCT11, CCT11,OsBBX23, OsCCT27, CCT27, OsR, OsCOL13, COL13,OsCOL4, OsD, OsBBX5, OsCOL4/OsD, OsCCT06, BBX5, CCT06,OsCCT36, OsCMF12, CMF12, OsRpp30, Rpp30,OsN, OsBBX7, OsCCT08, OsCCT8, OsDTH2, CCT08, CCT8, DTH2,OsCMF9, CMF9,OsCCT25, OsCMF7, CMF7,OsCCT02, OsCCT2, OsCMF2, OsSTA46, OsDHD4, CCT02, CCT2, CMF2, STA46,OsBBX19, BBX19, OsM, OsDTH2, qDTH-2, OsCCT22, CCT22,OsCCT17, OsCMF5, CMF5,OsCCT01, CCT01, OsCMF1,OsCCT03, CCT03, OsCCT3, CCT3, OsCMF3,OsCCT41, CCT41, OsCMF14,OsCCT39, OsCMF13, CMF13, OsRpp30-L, Rpp30-L,OsPRR95, Os-PRR95, Prr2, OsPRR2, OsCCT33,OsCCT35, CCT35, OsCMF11, OsH, DLN240, OsDLN240,Hd2(t), Hd2, qHD2(t), OsPRR37, Os-PRR37, PRR37, Prr4, OsPRR4, DTH7, Os DTH7, OsCCT28, CCT28, Ghd7.1, PRR37/Hd2, EH7-2, EH7-2/Hd2, Hd2/PRR37, PRR37-1a, PRR37-1b, PRR37-1c, PRR37-2a, PRR37- 2, HD7.2,OsCCT10, OsCMF4, CMF4, DLN75, OsDLN75,OsNRR, NRRa, NRRb, OsCCT18, OsCMF6,  CCT18, CMF6, CRCT, OsCRCT,OsTOC1, OsPRR1, Os-PRR1, PRR1, OsRRA21, OsCCT07,OsPRR59, Os-PRR59, Prr5, OsPRR5, OsCCT38, CCT38,OsBBX15, OsCCT19, OsS, OsSTA162, CCT19, STA162,OsBBX10, OsJ, OsCCT14, OsCOL10, COL10, OsCOL9, CCT14, COL9,OsBBX25, OsG, OsCCT29, CCT29,OsBBX20, OsE, OsCCT23, CCT23,OsBBX3, OsF, OsCCT05, CCT05,OsB, OsCO3, OsBBX27, OsCO3/OsB, OsCCT31, CO3, BBX27, CCT31,OsBBX17, OsL, OsCCT20, CCT20, OsCOL16, COL16,OsBBX8, OsK, OsCCT09, OsGhd2, OsK/Ghd2, CCT09, Ghd2,OsBBX28, OsCCT32, OsQ, CCT32,OsBBX26, BBX26, OsO, OsCCT30, CCT30, OsCOL15, OsCOL15/OsBBX26, Hd1-3
41919	20518745	Zhang Y., Sun K., Francisco J Sandoval, Santiago K., Roje S.	One-carbon metabolism in plants: characterization of a plastid serine hydroxymethyltransferase.	Biochem. J.	430(1)	97-105	2010	SHMT5,SHMT1,CADT1,SHMT2,SHMT3	OsSHM5, SHM5, OsSHMT5, OsSHTM2, SHTM2,OsSHM1, SHM1, OsSHMT1, CDM1, OsCDM1, OsSHTM3, SHTM3, OsSHMT, SHMT,OsSHM4, SHM4, OsSHMT4, SHMT4, OsSHTM1, SHTM1, OsCADT1, FLO20, OsFLO20,OsSHM2, SHM2, OsSHMT2,OsSHTM4, SHTM4,OsSHM3, SHM3, OsSHMT3, OsSHTM5, SHTM5
41920	17031029	Kitanaga Y., Jian C., Hasegawa M., Yazaki J., Kishimoto N., Kikuchi S., Nakamura H., Ichikawa H., Asami T., Yoshida S., Yamaguchi I., Suzuki Y.	Sequential regulation of gibberellin, brassinosteroid, and jasmonic acid biosynthesis occurs in rice coleoptiles to control the transcript levels of anti-microbial thionin genes.	Biosci. Biotechnol. Biochem.	70(10)	2410-9	2006	THI9,_,THI11,THI3,THI5,THI12,THI6,THI1,THI7,THI2,THI10,THI4	Osthi9, thi9, OsTHION12, THION12,OsTHI3, THI3, Osthi1, thi1, OsTHION3, THION3,Osthi11, thi11, OsTHION14, THION14,OsTHI2, THI2, Osthi3, thi3, OsTHION2, THION2,OsTHI5, Osthi5, OsTHION5, THION5, OsTHION4, THION4,Osthi12, thi12, OsTHION15, THION15,OsTHI6, Osthi6, thi6, OsTHION6, THION6,OsTHI9, THI9, Osthi1, thi1, Osthi8, thi8, OsTHION9, THION9,OsTHI7, OsTHION7, THION7,OsTHI1, THI1, Osthi2, thi2, OsTHION1, THION1,Osthi10, thi10, OsTHION16, THION16,Osthi4, thi4
41921	18790996	Chung T., Suttangkakul A., Richard D Vierstra	The ATG autophagic conjugation system in maize: ATG transcripts and abundance of the ATG8-lipid adduct are regulated by development and nutrient availability.	Plant Physiol.	149(1)	220-34	2009	ATG7,ATG10B,ATG4,ATG3B,ATG8,ATG3A,ATG8E,ATG10A,ATG12,ATG8D,ATG5,ATG4A,ATG8B	OsATG7, Atg7,OsATG10b, Atg10b,Atg4, OsAtg4, APG4, Atg4b, OsATG4b ,OsATG3b, Atg3b,Atg8, OsAtg8, APG8, OsATG8a, Atg8a,OsATG3a, Atg3a,OsATG8e, OsATG8d, Atg8d,OsATG10a, Atg10a,OsATG12, Atg12,OsATG8d, Atg8e,OsATG5, Atg5,OsATG4a, Atg4a,OsATG8b, Atg8b
41922	16284308	Esperanza Gonz?lez, Solano R., Rubio V., Leyva A., Javier Paz-Ares	PHOSPHATE TRANSPORTER TRAFFIC FACILITATOR1 is a plant-specific SEC12-related protein that enables the endoplasmic reticulum exit of a high-affinity phosphate transporter in Arabidopsis.	Plant Cell	17(12)	3500-12	2005	PHF1	OsPHF1, OsWD40-137, OsSEC12
41923	0	Hibara K., Nagato Y.	OsNAM and OsCUC3 are expressed specifically in organ boundaries	RGN	23	96-97	2006	NAM,CUC3	OsNAM, OMTN5, ONAC092, ONAC92, NAC92, CUC2, OsNAM/CUC2, DLN165, OsDLN165, OsCUC1, CUC1, OsNAM/ OMTN5, OsNAM1, NAM1,OsCUC3, ONAC107, NAC107, DLN214, OsDLN214
41924	11726707	Y Saijo, N Kinoshita, K Ishiyama, S Hata, J Kyozuka, T Hayakawa, T Nakamura, K Shimamoto, T Yamaya, K Izui	A Ca(2+)-dependent protein kinase that endows rice plants with cold- and salt-stress tolerance functions in vascular bundles.	Plant Cell Physiol.	42(11)	1228-33	2001	CDPK7,RAB16A	OsCDPK7, OsCPK7, CDPK1, OsCDPK11, CDPK12, OsCDPK13,Rab16A, rab21, RAB21, OsRab21, OsRAB21, OsRAB-21, OsRab16A, OsLEA29, rab16A, OsRAB16A
41925	8883374	A Ono, T Izawa, N H Chua, K Shimamoto	The rab16B promoter of rice contains two distinct abscisic acid-responsive elements.	Plant Physiol.	112(2)	483-91	1996	RAB16A,RAB16B	Rab16A, rab21, RAB21, OsRab21, OsRAB21, OsRAB-21, OsRab16A, OsLEA29, rab16A, OsRAB16A,rab21, OsLEA28, OsRAB16D, OsRab16d, Rab16d, OsRAB16b, XERO1, OsXERO1, OsRD22, RD22
41926	15208422	David R Nelson, Mary A Schuler, Suzanne M Paquette, Daniele Werck-Reichhart, S?ren Bak	Comparative genomics of rice and Arabidopsis. Analysis of 727 cytochrome P450 genes and pseudogenes from a monocot and a dicot.	Plant Physiol.	135(2)	756-72	2004		
41927	0	Rita SHARMA, Meenu KAPOOR, Akhilesh K. TYAGI, Sanjay KAPOOR	Comparative transcript profiling of TCP family genes provide insight into gene functions and diversification in rice and Arabidopsis	J Plant Mol Biol Biotechnol	1(1)	24-38	2010	FC1,PCF7,_,TCP19,REP1,_,_,_,PCF3,PCF6,TCP21,_,TCP18,PCF5,_,TCP9,TIG1,_,PCF1,TCP7,TCP5,_,_,PCF8,PCF2,_	fc1, OsTB1, tb1, OsTB1/FC1, Os TB1, TB1, OsFC1, MP3, OsMP3,OsPCF7,OsTCP10, OsSTA77, TCP10, STA77,OsTCP19,OsTCP24, REP1, TCP24, SDP1, SDP1/REP1, OsTb2, Tb2 ,OsTCP6, TCP6,OsTCP27, TCP27,OsTCP12, TCP12,OsPCF3,OsPCF6,OsTCP21,OsTCP17, TCP17,OsTCP18,OsPCF5,OsTCP3, TCP3,OsTCP9, OsTCP5, TCP5,OsTCP22, OsTCP15, TCP22, TCP15, OsTIG1,OsTCP11, TCP11,OsPCF1,OsTCP7, CHE,OsTCP5,OsTCP28, TCP28,OsTCP20, TCP20,OsPCF8,OsPCF2,OsTCP25, TCP25
41928	0	Isshiki M., Matsuda Y., Takasaki A., Hann Ling Wong, Satoh H., Shimamoto K.	du3, a mRNA cap-binding protein gene, regulates amylose content in Japonica rice seeds	Plant Biotechnology	25(5)	483-487	2008	WX1,DU3	wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx,du3, OsCBP20, OsCBP20/du3, CBP20
41929	22645574	Tegeder M., John M Ward	Molecular Evolution of Plant AAP and LHT Amino Acid Transporters.	Front Plant Sci	3	21	2012	AAP11G,AAP11F,HT,LHT7,LHT4A,AAP11C,AAP3,AAP11A,AAP11B,AAP7A,AAP11D,LHT9,LHT2,AAP10A,LHT8,AAP7C,AAP10D,AAP10C,AAP10B,AAP12A,AAP6,AAP7B,AAP11E,AAP12B,AAP12C	OsAAP11G, OsAAP19, AAP19,OsAAP11F, OsAAP7, AAP7, FCO7,OsHT, OsLHT1, LHT1,OsLHT7, OsLHT5, LHT5,OsLHT4A, OsLHT6, LHT6,OsAAP11C, OsAAP11, AAP11,OsAAP3, OsAAP9, AAP9,OsAAP11A, OsAAP16, AAP16,OsAAP11B, OsAAP15, AAP15,OsAAP7A, OsAAP13, AAP13,OsAAP11D, OsAAP12, AAP12,OsLHT9, OsLHT4, LHT4,OsLHT2,OsAAP10A, OsAAP17, AAP17,OsLHT8, OsLHT3, LHT3,OsAAP7C, OsAAP10, AAP10,OsAAP10D, OsAAP6, AAP6, qPC1,OsAAP10C, OsAAP5, AAP5,OsAAP10B, OsAAP4, AAP4, OsAAP4a, OsAAP4b, OsAAP4c,OsAAP12A, OsAAP3, AAP3,OsAAP6, OsAAP1, AAP1,OsAAP7B, OsAAP14, AAP14, OsAAP14a, OsAAP14b,  OsMBTB9, MBTB9,OsAAP11E, OsAAP8, AAP8,OsAAP12B, OsAAP18, AAP18,OsAAP12C, OsAAP2, AAP2
41930	0	Minobe Y, Monna L, Kiazawa N, Maehara Y, Masuda H	Gene Lhd4 controlling plant flowering and utilization thereof.	Japan Patent Kokai 2004-003122(2004-09-23)			2004		
41931	12355160	Song F., Robert M Goodman	OsBIMK1, a rice MAP kinase gene involved in disease resistance responses.	Planta	215(6)	997-1005	2002	MSRMK2,_,BWMK1,MAPK4	OsMSRMK2, OsMAPK5, OsMAP1, OsMPK3, OsBIMK1, OsMAPK2, MPK5, BIMK1, MAPK2, MAPK5, MPK3, OsMPK5, OsMAPK3, OsMAPK5b, MAPK3,OsMPK13, OsMAPK2, OsBIMK2, BIMK2, MPK13, MAPK2, OsMAPK17-2, MAPK17-2,OsBWMK1, MPK12, MAPK1, OsMAPK1, OsMPK12, OsMPK17-1, MPK17-1, OsBWMK1L, OsBWMK1M, OsBWMK1S, OsMAPK17-1, MAPK17-1, MAPK12, OsMAPK12,OsMAPK4, OsMAP2, OsMSRMK3, OsMPK4, OsMPK7, MAP2, MSRMK3, MPK4, MPK7, MAPK7, OsMAPK7
41932	15608331	Xiao-Hua Yang, Zhi-Hong Xu, Hong-Wei Xue	Arabidopsis membrane steroid binding protein 1 is involved in inhibition of cell elongation.	Plant Cell	17(1)	116-31	2005	MSBP2,MSBP1	OsMSBP2, OsMSBP1, OsCYB5-13, CYB5-13,OsMSBP1, OsCYB5-12, CYB5-12
41933	7994178	W R Hess, B Hoch, P Zeltz, T H?bschmann, H K?ssel, T B?rner	Inefficient rpl2 splicing in barley mutants with ribosome-deficient plastids.	Plant Cell	6(10)	1455-65	1994	RPL2	rpl2
41934	20192745	Mizutani M., Ohta D.	Diversification of P450 genes during land plant evolution.	Annu Rev Plant Biol	61	291-315	2010	MAS,D10,CPS4,D35,KS4,GO,CYP99A2,EUI1,D17,CYP99A3,PLA1	OsMAS, MAS1, OsMAS1, OsMAS/SDR110C-MS1, SDR110C-MS1, OsSDR110C-MS1, OsMS1, MS1,d10(d15,d16), d16, d15, dwf9, d10, OsCCD8b, OsCCD8, CCD8, OsD10,OsCPS4, CYC1, OsCYC1, OsCyc1, cpsl3, OsCPSL3, OsCPSsyn, OsCyc1/OsCPS4, OsTPS15, Os-CPS4, TPS11, OsTPS11,d35, d35(t), dwf30, OsKOL2, KOL2, KO2, OsKO2, OSKO2, KO, CYP701A, CYP701A6, Os KO2, OsKOL2/CYP701A,OsKS4, KS4, KSL4, OsKSL4, DTS2, OsDTS2, OsTPS16, TPS16, TPS8, OsTPS8,go, go1, pla3, PLA3, PLA3/GO, OsLBD3-7, LBD3-7,OsCYP99A2,eui1, GA16,17ox, CYP714D1, EUI, CYP714D1/EUI, OsEUI, LG5, OsLG5,d17(t), dwf14, d17, htd1, OsCCD7, CCD7, D17/HTD1, HTD1, OsHTD1, OsD17,OsCYP99A3,pla1, OsPLA1, plt1, CYP78A11
41935	21421368	Marcus Vin?cius Loss Sperandio, Leandro Azevedo Santos, Carlos Alberto Bucher, Manlio Silvestre Fernandes, Sonia Regina de Souza	Isoforms of plasma membrane H(+)-ATPase in rice root and shoot are differentially induced by starvation and resupply of NO?? or NH?+.	Plant Sci.	180(2)	251-8	2011	AMT1;1,NRT2.1,LMPA,AHA2,AHA4,AHA5,AHA1,AHA8,AHA3,AMT1;2	OsAMT1;1, OsAMT1:1, OsAMT1, AMT1-1, AMT1, OsAMT1p, OsAMT1-1, Osamt1-1, "OsAMT1,1", OsAMT1.1, AMT1.1, FCO12,OsNRT2.1, OsNRT2.2,OSA7, OsA7, osAHA7, AHA7, PAA-Hwa, OsLMPA,OSA2, OsA2, osAHA2, AHA2, OsPMA2,OSA4, OsA4, osAHA4, AHA4,OSA5, OsA5, osAHA5, AHA5,OSA1, OsA1, osAHA1, AHA1,OSA8, OsA8, A8, osAHA8, AHA8, Os-HA1, OsHA1,OSA3, OsA3, osAHA3, AHA3, PAM3,OsAMT1;2, AMT1-2, Osamt1-3, "OsAMT1,3", OsAMT1;3, OsAMT1.3, OsAMT1.2, AMT1.2
41936	22404471	Kobayashi T., Naoko K Nishizawa	Iron uptake, translocation, and regulation in higher plants.	Annu Rev Plant Biol	63	131-52	2012	BHLH63,YSL15,IRT1,IRO2,MTN,TOM1,ABI3,SAMS2,IDI4,NAS1,DMAS1,ENA1,MIT,NAC36,DEP,YSL18,MTK1,PEZ1,YSL2	OsIRO3, IRO3, OsbHLH063, bHLH063, bHLH63,OsYSL15, OsYs7,OsIRT1, ZIP10, OsZIP10, OsZIP12, ZIP12,OsIRO2, OsbHLH056, bHLH056, bHLH56, OsbHLH56,OsMTN,OsTOM1, ZIFL4, OsZIFL4 ,OsLFL2, LFL2, OsIDEF1, IDEF1, OsABI3,OsSAM2, SAM2, OsSAMS2, OS-SAMS2,OsIDI4,OsNAS1,OsDMAS1, OsAKR5, AKR5,OsENA1,OsMIT,ONAC036, ONAC36, ONAC038, ONAC38, IDEF2, OsIDEF2,OsDEP,OsYSL18, OsYs2 ,OsMTK, OsMTK1, MTK,OsPEZ1, OsMATE14, MATE14,OsYSL2, Os-YSL2, OsYs6 
41937	0	Jairin J., Teangdeerith S., Leelagud P., Phengrat K., Vanavichit A., Toojinda T.	Physical mapping of Bph3, a brown planthopper resistance locus in rice	Mj. Int. J. Sci. Tech.	01(2)	166-177	2007	BPH3	Bph3
41938	0	GUO Ze-Jian, KAN Yun-Chao, CHEN Xu-Jun, LI De-Bao, WANG Dao-Wen	Characterization of a rice WRKY gene Whose Expression Is Induced upon Pathogen Attack and Mechanical Wounding	Acta Bot. Sin.	46(8)	955-964	2004	WRKY90	OsWRKY90
41939	20217243	Felipe Klein Ricachenevsky, Raul Antonio Sperotto, Paloma Koprovski Menguer, Janette Palma Fett	Identification of Fe-excess-induced genes in rice shoots reveals a WRKY transcription factor responsive to Fe, drought and senescence.	Mol. Biol. Rep.	37(8)	3735-45	2010	ORYA,WRKY90,C2DP16	ocp*, ocp, OsOCP, OsORYA,OsWRKY90,OsGAP1, GAP1, OsC2DP16
41940	0	Ahmadikhah A., I. Karlov G.	Molecular mapping of the fertility-restoration gene Rf4 for WA-cytoplasmic male sterility in rice	Plant Breeding	125	363-367	2006	_	Rf4, Rf-4, PPR782a, PPR9, PPR3
41941	15200956	Matthew W Jones-Rhoades, David P Bartel	Computational identification of plant microRNAs and their targets, including a stress-induced miRNA.	Mol. Cell	14(6)	787-99	2004	MIR169Q	miR169q, osa-miR169q, osa-MIR169q
41942	19796675	Jian X., Zhang L., Li G., Zhang L., Wang X., Cao X., Fang X., Chen F.	Identification of novel stress-regulated microRNAs from Oryza sativa L.	Genomics	95(1)	47-55	2010		
41943	25947154	Gutjahr C., Sawers R.J., Marti G., Andr?s-Hern?ndez L., Yang S.Y., Casieri L., Angliker H., Oakeley E.J., Wolfender J.L., Abreu-Goodger C., Paszkowski U.	Transcriptome diversity among rice root types during asymbiosis and interaction with arbuscular mycorrhizal fungi.	Proc. Natl. Acad. Sci. U.S.A.	112(21)	6754-9	2015	SK3,BC6,BC7,_,DIR3	OsSK3,Bc6*, Bc6, OsCesA9, CESA9, OsCESA9, OS_CESA09, OsCesA 9, CesA9, BC88, SDBC1, OsSDBC1,OsCesA4, OsCESA4, CESA4, OS_CESA04, BC11, bc7t, Bc7(t), bc-7, OsCesA 4, CesA4, FC17/CESA4, FC17, OsFC17,prx68,OsDIR3, OsjDIR3
41944	25985140	Li X.M., Chao D.Y., Wu Y., Huang X., Chen K., Cui L.G., Su L., Ye W.W., Chen H., Chen H.C., Dong N.Q., Guo T., Shi M., Feng Q., Zhang P., Han B., Shan J.X., Gao J.P., Lin H.X.	Natural alleles of a proteasome alpha2 subunit gene contribute to thermotolerance and adaptation of African rice.	Nat. Genet.	47(7)	827-33	2015	TT1,AQR,_	OsPAB1, PAB1, OsTT1,OsAQR, OsDNA2_2, DNA2_2,PAB2, OsPAB2
41945	25957386	Liu X., Zhou S., Wang W., Ye Y., Zhao Y., Xu Q., Zhou C., Tan F., Cheng S., Zhou D.X.	Regulation of histone methylation and reprogramming of gene expression in the rice inflorescence meristem.	Plant Cell	27(5)	1428-44	2015	WFP,IAA8,GH3-2,_,TDC1,MADS18,CKX4,RAP1A,MADS56,GN1A,IAA31,IDS1,SAUR11,MADS27,YUCCA9,MADS23,PAP2,SAUR23,ERF62,ERF102,ERF136,RAP1B,EG2,NL1,CLF,GH3-6	OsSPL14, SPL14, IPA1, WFP/IPA1, OsSPL14/WFP/IPA1, OsIPA1,  IPA1/OsSPL14,OsIAA8,OsGH3-2, OsGH3.2, GH3.2,JMJ703,OsTDC, TDC, TDC2, OsTDC1, OsTDC4,OsMADS18, MADS2, OsMADS2, MADS28, OsMADS28, FDRMADS7, OsMADS18/28,OsCKX4, ckx4, OsSCRM, OsSCRM2, SCRM, SCRM2,OsMADS15, FDRMADS3, RMADS215, MADS15, DEP,OsMADS56, FDRMADS8, RMADS214,Gn1a, OsCKX2, CKX2, ckx2, Gn1a/OsCKX2, Os CKX2, CKX2/Gn1a,OsIAA3, IAA3, OsIAA31, OsIAA30, IAA30,OsIDS1, AP2/EREBP#033, AP2/EREBP33, AP2-33/IDS1, AP2-33, AP2-2, DLN104, OsDLN104,OsSAUR11,OsMADS27, MADS-27a, OsSTA66, OsMADS27a,OsYUCCA9, OsYUC9, YUC9,OsMADS23, MADS-23,MADS34, OsMADS34, RMADS212/RMADS217/RMADS221, OsPAP2/MADS34, MADS34/PAP2, PAP2/OsMADS34, OsMADS34/PAP2, OsMADS19,OsSAUR23,OsERF#062, OsERF062, OsERF62, AP2/EREBP#125, AP2/EREBP125, AP2-125, OsLG3, LG3, OsLG3/OsAP2-125, OsAP2-125, WAP1, OsWAP1, OsSTAP1, STAP1, ERF1, OsERF1,OsERF#102, OsERF102, AP2/EREBP#123, AP2/EREBP123, OsEATB, EATB,OsERF#136, OsERF136, AP2/EREBP#106, AP2/EREBP106, AP2-106,MADS14, OsMADS14, FDRMADS6, RMADS211, AGL10,OsTIFY3, OsJAZ10, OsJAZ 1, OsJAZ1, JAZ1, EG2/OsJAZ1, EG2, JAZ1/EG2,nl1, OsGATA15, GATA15, OsNL1,OsSET24, SDG711, EZ1, OsCLF, OsSDG711,OsGH3-6, OsGH3.6, GH3.6
41946	26021733	Kim N.H., Kwak J., Baik J.Y., Yoon M.R., Lee J.S., Yoon S.W., Kim I.H.	Changes in lipid substances in rice during grain development.	Phytochemistry	116	170-9	2015		
41947	26002868	Huang D., Wang S., Zhang B., Shang-Guan K., Shi Y., Zhang D., Liu X., Wu K., Xu Z., Fu X., Zhou Y.	A Gibberellin-Mediated DELLA-NAC Signaling Cascade Regulates Cellulose Synthesis in Rice.	Plant Cell	27(6)	1681-96	2015	NAC31,NAC29,SLR1,_	ONAC031, ONAC31, OsSWN3,ONAC029, ONAC29, OsSWN2, OsSWN2L, OsSWN2S, OsNST1/2, SWN2, SWN2L, SWN2S, NST1/2, DLN201, OsDLN201,slr1-1, slr1, slr, GAI, OsGAI, OsSLR1, Os SLR1, OsRGA1, OsGRAS-18, OsGRAS-18, GRAS-18, GRAS18, SLR-1,OsMYB55/61, OsMYB55, MYB55, OsMYB61, MYB61, OsMYB61a, MYB61a, Os2R_MYB5, 2R_MYB5 
41948	25991736	Wang R., Jing W., Xiao L., Jin Y., Shen L., Zhang W.	The Rice High-Affinity Potassium Transporter1;1 Is Involved in Salt Tolerance and Regulated by an MYB-Type Transcription Factor.	Plant Physiol.	168(3)	1076-90	2015	_,HKT4,HKT1,SKC1	OsMYBc, MYBc,OsHKT4, OsHKT1;1, HKT1;1, OsHKT2, RNC4, OsHKT1;1-FL, OsHKT1;1-V1, OsHKT1;1-V2, OsHKT1;1-V3, OsHKT1;1-V4, OsHKT1;1-V5, OsHKT1;1-V6, OsHKT1;1-V7, OsHKT1;1-V8,OsHKT1, OsHKT2;1, HKT2;1, Ni (Nipponbare)-OsHKT1, Po (Pokkali)-HKT1, OsHKT1;1, HKT1;1,OsHKT8, HKT8, Os-HKT1;5, OsHKT1;5, HKT1;5, SKC1, qSKC-1(t), OsSKC1
41949	25954944	Zhao M., Liu B., Wu K., Ye Y., Huang S., Wang S., Wang Y., Han R., Liu Q., Fu X., Wu Y.	Regulation of OsmiR156h through Alternative Polyadenylation Improves grain yield in Rice.	PLoS ONE	10(5)	e0126154	2015	SD1,SDT,WFP	sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2, OsPHQ1, OsPHq1, PHq1,miR156h, OsmiR156h, osmiR156h, osa-miR156h, osa-MIR156hosa-miR156h-3p osa-miR156h-5p,OsSPL14, SPL14, IPA1, WFP/IPA1, OsSPL14/WFP/IPA1, OsIPA1,  IPA1/OsSPL14
41950	26037695	Khew C.Y., Teo C.J., Chan W.S., Wong H.L., Namasivayam P., Ho C.L.	Brassinosteroid insensitive 1-associated kinase 1 (OsI-BAK1) is associated with grain filling and leaf development in rice.	J. Plant Physiol.	182	23-32	2015	BAK1	OsI-BAK1, I-BAK1, OsBAK1
41951	25977235	Ohta M., Takaiwa F.	OsHrd3 is necessary for maintaining the quality of endoplasmic reticulum-derived protein bodies in rice endosperm.	J. Exp. Bot.	66(15)	4585-93	2015	PRO13A.2,HRD3,OS9,MAL,BZIP50,BIP4	Prol-19, OsEnS-94, RM1, OsRM1, pro13a.2, OsPRO13A.2, PROLM26,OsHrd3, Hrd3,OsOS-9, OS-9,HRD1, OsHrd1, Hrd1, OsMAL,  OsRING9, RING9,OsbZIP60, bZIP50, OsbZIP50, OsbZIP74, bZIP74, OsbZIP50-S,OsBiP4, BiP4, OsMed37_5, Med37_5, BiP2
41952	26233894	Tian C., Zuo Z., Qiu J.L.	Identification and Characterization of ABA-Responsive MicroRNAs in Rice.	J Genet Genomics	42(7)	393-402	2015	MIR1879,MIR169N,MIR162B,MIR169F,MIR397B,MIR397A,TRE1,ABA1,MIR390,MIR1846E,MIR1425,MIR408,MIR528,MIR169	miR1879, osa-miR1879, osa-MIR1879,miR169n, osa-miR169n, osa-MIR169n,miR162b, osa-miR162b, osa-MIR162b ,miR169f, osa-miR169f, osa-MIR169f, osa-miR169f.2,miR397b, osa-miR397b, osa-MIR397b, miR397b*, OsmiR397b, Os-MIR397b,miR397a, osa-miR397a, osa-MIR397a, OsmiR397a,OsTRE, OsTRE1, TRE,OsABA1, Zep1, OsAba1, Aba2, OsAba2, OsZep1, Zep, OsZep, Aba1, OsABA2, Osaba1, OsZEP-1, OsZEP, OSZEP1, ZEP1, ZEP,OsmiR390, miR390, osa-MIR390osa-miR390, osa-miR390-3p, osa-miR390-5p,miR1846e, osa-miR1846e, osa-MIR1846e,OsmiR1425, miR1425, osa-miR1425, osa-MIR1425, osa-miR1425-3p, osa-miR1425-5p,miR408, osa-MIR408osa-miR408 osa-miR408-3p osa-miR408-5p, OsMIR408 ,miR528, Osa-miR528, OsmiR528, OsMIR528, osa-MIR528, miR528*, osa-miR528, osa-miR528-5p, MIR528-T1, MIR528-T2,miR169, osa-miR169, osa-MIR169a, miR169a, osa-miR169a
41953	25951042	Kim H.B., Cho J.I., Ryoo N., Shin D.H., Park Y.I., Hwang Y.S., Lee S.K., An G., Jeon J.S.	Role of rice cytosolic hexokinase OsHXK7 in sugar signaling and metabolism.	J Integr Plant Biol			2015	HXK7,HXK6,AMY3D,HXK5	OsHXK7, OsHXK8,OsHXK6,Amy3D/E*(RAmy3D/E), alpha Amy3, AmyII-4, AMY1.3, Amy3D, Amy3D/E*, RAmy3D/E, Amy3D_E, Amy8, aAmy3, RAmy3D, OsAmy3D, alphaAmy3, OsRamy3D,OsHXK5
41954	26089149	Zhang D., Liu M., Tang M., Dong B., Wu D., Zhang Z., Zhou B.	Repression of microRNA biogenesis by silencing of OsDCL1 activates the basal resistance to Magnaporthe oryzae in rice.	Plant Sci.	237	24-32	2015	MIR1882E,MIR166B,MIR169I,DCL1,MIR156D,MIR162A,SDT,DCL2A,MIR156G,MIR1862D,SHO1,MIR5794,MIR156F,MIR166F,DCL2B,DCL3A,MIR166A,MIR166C,MIR166D,MIR168A,MIR396E,MIR156A,MIR156J,MIR167D,MIR156I,MIR156E,MIR156B,MIR156C,MIR166N,MIR167J,MIR167G,MIR167H,MIR167I,MIR167F,MIR167E	miR1882e, osa-miR1882e, osa-MIR1882e, osa-miR1882e-5p,miR166b, osa-miR166bosa-miR166b-3p osa-miR166b-5p, OsmiR166b,miR169i, osa-miR169i, osa-MIR169iosa-miR169i-3p osa-miR169i-5p.2,Dcl1, OsDCL1, osDCL1, Os-DCL1, OsDCL1a, DCL1a,miR156d, OsmiR156d, osmiR156d, osa-miR156d, osa-MIR156d,miR162a, osa-miR162a, osa-MIR162a, OsMIR162a,miR156h, OsmiR156h, osmiR156h, osa-miR156h, osa-MIR156hosa-miR156h-3p osa-miR156h-5p,OsDCL2a, OsDCL2, DCL2,miR156g, OsmiR156g, osmiR156g, osa-miR156g, osa-MIR156gosa-miR156g-3p osa-miR156g-5p,miR1862d, osa-miR1862d, osa-MIR1862d,sho1, DCL4, OsDCL4, Os DCL4, Dcl4 ,miR5794, osa-miR5794, osa-MIR5794,miR156f, osmiR156f, OsmiR156f, osa-miR156f, osa-MIR156fosa-miR156f-3p osa-miR156f-5p,miR166f, osa-miR166f,OsDCL2b,OsDCL3a,miR166a, osa-miR166aosa-miR166a-3p osa-miR166a-5p,miR166c, osa-miR166cosa-miR166c-3p osa-miR166c-5p,miR166d, osa-miR166dosa-miR166d-3p osa-miR166d-5p,miR168a, osa-miR168a, osa-MIR168a osa-miR168a-3p osa-miR168a-5p, OsMIR168a,miR396e, osa-miR396e, osa-MIR396eosa-miR396e-3p osa-miR396e-5p,miR156a, OsmiR156a, osmiR156a, osa-miR156a, osa-MIR156a,miR156j, OsmiR156j, osmiR156j, osa-miR156j, osa-MIR156josa-miR156j-3p osa-miR156j-5p,miR167d, osa-miRNA167d, osa-miR167d, osa-miR167d-3p, osa-miR167d-5p,miR156i, OsmiR156i, osmiR156i, osa-miR156i, osa-MIR156i,miR156e, OsmiR156e, osmiR156e, osa-miR156e, osa-MIR156e,miR156b, OsmiR156b, osmiR156b, osa-miR156b, osa-MIR156b, miR156b*osa-miR156b-3p osa-miR156b-5p,miR156c, OsmiR156c, osmiR156c, osa-miR156c,osa-MIR156c, miR156c*osa-miR156c-3p osa-miR156c-5p,miR166n, osa-miR166n, osa-MIR166n, miR166j, osa-miR166j, osa-MIR166j, osa-miR166j-3p, osa-miR166j-5p,miR167j, osa-miR167j, osa-MIR167j,miR167g, osa-miR167g, osa-miRNA167g ,miR167h, osa-miR167h, osa-MIR167hosa-miR167h-3p osa-miR167h-5p,miR167i, osa-miR167iosa-miR167i-3p osa-miR167i-5p,miR167f, osa-miR167f, osa-miRNA167f ,miR167e, osa-miR167e, osa-miRNA167e osa-miR167e-3p osa-miR167e-5p
41955	25956502	Maegawa K., Takii R., Ushimaru T., Kozaki A.	Evolutionary conservation of TORC1 components, TOR, Raptor, and LST8, between rice and yeast.	Mol. Genet. Genomics			2015	RAPTOR2 ,_,TOR,_	OsRaptor 2, Raptor 2,OsWD40-81, OsLST8, LST8,  OsDWD26, DWD26,OsTOR,
41956	26023934	Fan T., Li X., Yang W., Xia K., Ouyang J., Zhang M.	Rice osa-miR171c Mediates Phase Change from Vegetative to Reproductive Development and shoot apical meristem Maintenance by Repressing Four OsHAM Transcription Factors.	PLoS ONE	10(5)	e0125833	2015	HD3A,HAM2,MIR171C,HAM1,HAM3,HAM4,RFT1,FON2	Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,OsHAM2, OsGRAS-8, OsGRAS8, GRAS-8, GRAS8,miR171c, osa-miR171cosa-miR171c-3p osa-miR171c-5p,OsSCL1, SCL1, OsHAM1, OsGRAS-9, OsGRAS-9, GRAS-9, GRAS9, OsGRAS8, GRAS8, SCL6-II, OsSCL6-II,OsHAM3, OsGRAS-21, OsGRAS21, GRAS-21, GRAS21, OsGRAS20, GRAS20 ,OsHAM4,FT-L 3, OsFTL3, FTL3, FT-L3, RFT, OsRFT1,fon2, OsFON2, FON4, OsFON4, FON2/FON4, TG1
41957	25990214	Wang X.Q., Yoon M.Y., He Q., Kim T.S., Tong W., Choi B.W., Lee Y.S., Park Y.J.	Natural variations in OsgammaTMT contribute to diversity of the alpha-tocopherol content in rice.	Mol. Genet. Genomics			2015	VTE4	OsVTE4, OsgammaTMT, gammaTMT
41958	26012744	Xia K., Ou X., Gao C., Tang H., Jia Y., Deng R., Xu X., Zhang M.	OsWS1 involved in cuticular wax biosynthesis is regulated by osa-miR1848.	Plant Cell Environ.			2015	_,MIR1848	OsWS1, WS1,miR1848, osa-miR1848, osa-MIR1848
41959	26029232	Sharma N., Tripathi A., Sanan-Mishra N.	Profiling the expression domains of a rice-specific microRNA under stress.	Front Plant Sci	6	333	2015	NAC123,MIR820C,MIR820A,MIR820B,MIR820E,MIR820D,DRM2,PIP1A	ONAC123, N77,miR820c, osa-miR820c, osa-MIR820c, OsmiR820c,miR820a, osa-miR820a, osa-MIR820a, OsmiR820a,miR820b, osa-miR820b, osa-MIR820b, OsmiR820b,miR820e, osa-miR820e, osa-MIR820e,miR820d, osa-miR820d, osa-MIR820d,OsDRM2, osdrm2, DRM2-1,OsPIP1a, OsPIP1;1, PIP1a, RWC-1, PIP1-1, RWC1, OsPIP1-1, PIP1;1, PIP1-5
41960	25990386	Wang Z.Q., Li G.Z., Gong Q.Q., Li G.X., Zheng S.J.	OsTCTP, encoding a translationally controlled tumor protein, plays an important role in mercury tolerance in rice.	BMC Plant Biol.	15	123	2015	_	OsTCTP, TCTP, OsTCTPa, OsTCTPb, TPH
41961	26057797	Raman S., Suguna K.	Functional characterization of heat-shock protein 90 from Oryza sativa and crystal structure of its N-terminal domain.	Acta Crystallogr F Struct Biol Commun	71(Pt 6)	688-96	2015	_	OsHsp90, HSP90
41962	25970642	Ye Y., Yuan J., Chang X., Yang M., Zhang L., Lu K., Lian X.	The Phosphate Transporter Gene OsPht1;4 Is Involved in Phosphate Homeostasis in Rice.	PLoS ONE	10(5)	e0126186	2015	SPX1,LTN1,PHR2,PT4	OsSPX1,LTN1, OsPHO2, PHO2.1, PHO2.2, PHO2, OsUBC35, UBC35,OsPHR2, Os-PHR2,OsPT4, PHT1-4, OsPht1;4, PHT1-2, PHT1;4, OsPHT1;4
41963	26089154	Sharma G., Giri J., Tyagi A.K.	Rice OsiSAP7 negatively regulates ABA stress signalling and imparts sensitivity to water-deficit stress in Arabidopsis.	Plant Sci.	237	80-92	2015	SAP7	OsSAP7, OsiSAP7
41964	25957211	Raineri J., Wang S., Peleg Z., Blumwald E., Chan R.L.	The rice transcription factor OsWRKY47 is a positive regulator of the response to water deficit stress.	Plant Mol. Biol.	88(4-5)	401-13	2015	_,_,WRKY47	OsDUF26, CRRSP, OsCRRSP55, CRRSP55,CaMBP,OsWRKY47
41965	25983737	Guo H., Zhang W., Tian H., Zheng K., Dai X., Liu S., Hu Q., Wang X., Liu B., Wang S.	An auxin responsive CLE gene regulates shoot apical meristem development in Arabidopsis.	Front Plant Sci	6	295	2015	_	Os_CLE48, OsCLE48, CLE48
41966	26024762	Xu J., Zha M., Li Y., Ding Y., Chen L., Ding C., Wang S.	The interaction between nitrogen availability and auxin, cytokinin, and strigolactone in the control of shoot branching in rice (Oryza sativa L.).	Plant Cell Rep.	34(9)	1647-62	2015	FC1,CKX5,CKX1,LRA1,IPT4,PIN9,PIN1B,D17,IPT8,D27,CKX4,D10,CKX9,IPT5,IPT7,PIN1A	fc1, OsTB1, tb1, OsTB1/FC1, Os TB1, TB1, OsFC1, MP3, OsMP3,OsCKX5, ckx5,OsCKX1,OsPIN2, PIN2, OsLRA1, WAR1, OsWAR1,OsIPT4,OsPIN9,PIN1A, OsPIN1A, OsPIN1a, REH1, OsPIN1, OsPIN1b, REH1/OsPIN1,d17(t), dwf14, d17, htd1, OsCCD7, CCD7, D17/HTD1, HTD1, OsHTD1, OsD17,OsIPT8,d27(d t), dt, dwf23, d27, OsD27,OsCKX4, ckx4, OsSCRM, OsSCRM2, SCRM, SCRM2,d10(d15,d16), d16, d15, dwf9, d10, OsCCD8b, OsCCD8, CCD8, OsD10,OsCKX9,OsIPT5,OsIPT7,PIN1C, OsPIN1C, OsPIN1c, OsPIN1a
41967	26053497	Hu B., Wang W., Ou S., Tang J., Li H., Che R., Zhang Z., Chai X., Wang H., Wang Y., Liang C., Liu L., Piao Z., Deng Q., Deng K., Xu C., Liang Y., Zhang L., Li L., Chu C.	Variation in NRT1.1B contributes to nitrate-use divergence between rice subspecies.	Nat. Genet.	47(7)	834-8	2015	NPF6.5,_,_	OsNRT1.1B, NRT1.1B, OsNPF6.5,OsNIA2, NIA2, OsNR2, NR2, OsNR3, NR3, OsNR1.2, NR1.2,OsNR1, NR1, nia1, OsNIA1, NIA1, OsNIA2, NIA2
41968	26123916	Zhan X., Sun B., Lin Z., Gao Z., Yu P., Liu Q., Shen X., Zhang Y., Chen D., Cheng S., Cao L.	Genetic mapping of a QTL controlling source-sink size and heading date in rice.	Gene			2015	RSR1	AP2/EREBP#090, AP2/EREBP90, OsTOE1, TOE1, qHD5, AP2-1, AP2/EREBP/RSR1, OsRSR1, DLN130, DLN130a, DLN130b, OsDLN130, OsDLN130a, OsDLN130b
41969	26068669	Janmohammadi M., Zolla L., Rinalducci S.	Low temperature tolerance in plants: Changes at the protein level.	Phytochemistry	117	76-89	2015		
41970	26082171	Mach J.	Domesticated versus Wild Rice? Bring It Awn!	Plant Cell	27(7)	1818	2015	LABA1	LOGL6, OsLOGL6, An-2
41971	26082172	Hua L., Wang D.R., Tan L., Fu Y., Liu F., Xiao L., Zhu Z., Fu Q., Sun X., Gu P., Cai H., McCouch S.R., Sun C.	LABA1, a Domestication Gene Associated with Long, Barbed Awns in Wild Rice.	Plant Cell	27(7)	1875-88	2015	LABA1,RR2,RR11,CYCD7;1,RR3,RR6,RR7,RR4	LOGL6, OsLOGL6, An-2,rr2, Osrr2, OsRR2, Rra10, OsRRA10,OsRR11, Rra8, OsRRA8, RR8,CycD7;1, CycD7;os;1, Orysa;CycD7;1, OsCYCD3, CYCD3, OsCYCD7;1,OSRR3, OsRR3, rr3, Rra7, OsRRA7,OsRR6, rr6, Rra6, OsRRA6,rr7, OsRR7, Rra5, OsRRA5,rr4, OsRR4, Rra3, OsRRA3
41972	26121399	Cai W., Liu W., Wang W.S., Fu Z.W., Han T.T., Lu Y.T.	Overexpression of Rat Neurons nitric oxide synthase in Rice Enhances Drought and Salt Tolerance.	PLoS ONE	10(6)	e0131599	2015	LEA3-1,CATB,_,ONAC2,CATA,ATP6,NAC6,DREB2A,ERF42	OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3, OsLEA3A, LEA3A,CatB, CAT-B, OsCatB, OsCATB, OsCAT1B, CAT1B, CAT2, OsCAT2,OsRD29A, RD29A,SNAC1, snac1, OsNAC9, ONAC002, ONAC2, ONAC033, ONAC33, ONAC043, ONAC43, ONAC044, ONAC44, OsNAC19, NAC19, SNAC1/ONAC002, OsSNAC1, OsNAC9, OsNAC1,CATA1, Cat A1*, OSCAT-A, Cat2, CatA1, CAT-A, OsCatA, OsCAT, CAT, catA, OSCATA, OsCATc, OsCATA, OsCAT1A, CAT1, OsCAT1, OsCATC, OsCAT2,atp6, OsPOX1, prx3, POX1,OsNAC6, ONAC048, NAC48, SNAC2, SNAC2/OsNAC6, OsNAC6/ONAC048, OsSNAC2, SNAC-2, OsSNAC-2, OsNAC2,OsDREB2A, OsDREB2a, ERF40, OsERF#040, OsERF040, OsERF40, AP2/EREBP#167, AP2/EREBP167,OsERF#042, OsERF042, OsERF42, AP2/EREBP#048, AP2/EREBP48, OsDREB2B, DREB2B, OsDREB2B2, OsDREB2A, DREB2A
41973	26046379	Shen Y., Shen L., Shen Z., Jing W., Ge H., Zhao J., Zhang W.	The potassium transporter OsHAK21 functions in the maintenance of ion homeostasis and tolerance to salt stress in rice.	Plant Cell Environ.			2015	HAK21	OsHAK21
41974	26070439	Noda S., Koshiba T., Hattori T., Yamaguchi M., Suzuki S., Umezawa T.	The expression of a rice secondary wall-specific cellulose synthase gene, OsCesA7, is directly regulated by a rice transcription factor, OsMYB58/63.	Planta	242(3)	589-600	2015	XAX1,GT43I,RLM1,CESA7,ROMT9,4CL3,_,_,MYB86-L1,GH2,MYB52,BC6,_,BC7,MYB86,PAL1,_,CEF1,_,_	OsXAX1, OsGT61-1, GT61-1,OsGT43I, OsGT43B, GT43B,OsMYB86-L2, MYB86-L2, OsRLM1, Os2R_MYB59, 2R_MYB59,OsCesA7, OsCESA7, OS_CESA07, OsCesA 7, CesA7,COMT, OsCOMT, ROMT-9, OsCOMT1, OsCAldOMT1, CAldOMT1, OsOMT, OsCOMT15, COMT15,Os4CL3, Os4CL2, Os4CL, 4CL2, 4CL,OsMYB42/85, MYB42/85, OsMYB85, MYB85, Os2R_MYB85, 2R_MYB85 ,OsGT43A, GT43A,OsMYB86-L1, Os2R_MYB8, 2R_MYB8 ,gh2, CAD2, CAD, OsCAD2, OsGH2 ,OsMYB52, OsMYB52/54, Os2R_MYB41, 2R_MYB41,Bc6*, Bc6, OsCesA9, CESA9, OsCESA9, OS_CESA09, OsCesA 9, CesA9, BC88, SDBC1, OsSDBC1,R2R3-MYB, OsMYB55/61-L,  MYB55/61-L,  OsMYB55,  OsMYB61-L, MYB55,  MYB61-L, OsMYB61L, MYB61L, OsMYB61b, MYB61b, Os2R_MYB53, 2R_MYB53, OsMYB2P-1, MYB2P-1,OsCesA4, OsCESA4, CESA4, OS_CESA04, BC11, bc7t, Bc7(t), bc-7, OsCesA 4, CesA4, FC17/CESA4, FC17, OsFC17,OsMYB86,OsPAL, Pal1*, Pal1, PAL, Pal_1, PalI, PAL2, OsPAL01, PAL01, OSPAL, CP-1, GP-1, OsPAL1, PAL3, OsPAL3,OsMYB58/63, OsMYB58, OsMYB63, MYB58/63, MYB58, MYB63, OsMYB58/63b, MYB58/63b, Os2R_MYB51, 2R_MYB51,OsMYB103, OsMYB103L, CEF1/OsMYB103L, MYB103, MYB103L, OsMYB93, MYB93, OsFC9, FC9, Os2R_MYB74, 2R_MYB74,OsMYB55/61, OsMYB55, MYB55, OsMYB61, MYB61, OsMYB61a, MYB61a, Os2R_MYB5, 2R_MYB5 ,OsMYB58/63-L, MYB58/63-L, OsMYB58/63a, MYB58/63a, Os2R_MYB29, 2R_MYB29, OsMYB58, MYB58
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41976	26067440	Xu K., Chen S., Li T., Ma X., Liang X., Ding X., Liu H., Luo L.	OsGRAS23, a rice GRAS transcription factor gene, is involved in drought stress response through regulating expression of stress-responsive genes.	BMC Plant Biol.	15	141	2015	1CYSPRXB,_,RBBI2-1,_,_,GRAS23,2ODD8,GSTU5,_	Os1-Cys Prx B, 1-Cys Prx B, Os1-CysPrxB, 1-CysPrxB,prx64,RBBI2-1, OsBBTI2, BBTI2,,,OsGRAS23, OsGRAS-23, GRAS-23, OsGRAS22, GRAS22 ,2-ODD8, Os2-ODD8, Os2ODD8, OsLDOX2, LDOX2,OsGSTU5,OsHIGD2, HIGD2
41977	26040493	Huang Q.N., Shi Y.F., Zhang X.B., Song L.X., Feng B.H., Wang H.M., Xu X., Li X.H., Guo D., Wu J.L.	Single base substitution in OsCDC48 is responsible for premature senescence and death phenotype in rice.	J Integr Plant Biol			2015	PSD128,CDC48E	OsCDC48, CDC48, OsCDC48-1, CDC48-1,OsCDC48E, OsCDC48-2, CDC48-2
41978	26083148	Choi C., Hwang S.H., Fang I.R., Kwon S.I., Park S.R., Ahn I., Kim J.B., Hwang D.J.	Molecular characterization of Oryza sativa WRKY6, which binds to W-box-like element 1 of the Oryza sativa pathogenesis-related (PR) 10a promoter and confers reduced susceptibility to pathogens.	New Phytol.			2015	WRKY6,PR10A,ICS1,NH1	OsWRKY6, WRKY-6, DLN103, OsDLN103,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsICS1, OsICS, ICS,OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2, DLN5, OsDLN5,  OsBTBA1, BTBA1
41979	26083975	Xia K., Ou X., Tang H., Wang R., Wu P., Jia Y., Wei X., Xu X., Kang S.H., Kim S.K., Zhang M.	Rice microRNA osa-miR1848 targets the obtusifoliol 14alpha-demethylase gene OsCYP51G3 and mediates the biosynthesis of phytosterols and brassinosteroids during development and in response to stress.	New Phytol.			2015	GW5,MIR1848,CYP51G3,GIF1,LK3	qSW5/GW5, GSE5, OsGSE5, OsGW5, qSW5,miR1848, osa-miR1848, osa-MIR1848,OsCYP51G3,gif1, CIN2, OsCIN2, OsGIF1, WB1, OsWB1, GIF1/OsCIN2,lk3(t), lk3(t)*, SG3, GS3, SG3-GS3, OsGW3, OsGS3, RGG3/GS3/Mi/OsGGC1, RGG3, Mi, OsGGC1, GGC1, OsSYL3, SYL3, TT2, OsTT2
41980	26096057	Jing H., Yang X., Zhang J., Liu X., Zheng H., Dong G., Nian J., Feng J., Xia B., Qian Q., Li J., Zuo J.	Peptidyl-prolyl isomerization targets rice Aux/IAAs for proteasomal degradation during auxin signalling.	Nat Commun	6	7395	2015	IAA13,LRT2,TIR1,IAA11	OsIAA13, OsIAA1, OsiIAA1,CYC2, cyc2*, cyc2, OsCYP2, Cyp2, OsCYP19-2, CYP19-2, OsCYP-2, OsCyp2-P, OsCyp2, OsCYP19-1, LRT2/OsCYP2, lrt2*, lrt2, Ppcti ,OsTIR1, OsFbox248, Fbox248, Os_F071, AFB,  OsFBL21, FBL21,OsIAA11
41981	26259181	Li C., Hu Y., Huang R., Ma X., Wang Y., Liao T., Zhong P., Xiao F., Sun C., Xu Z., Deng X., Wang P.	Mutation of FdC2 gene encoding a ferredoxin-like protein with C-terminal extension causes yellow-green leaf phenotype in rice.	Plant Sci.	238	127-34	2015	_,FDC1,HDY1,_,_	Fd, OsFd4, Fd4,OsFdC1, FdC1,OsFdC2, FdC2, OsHDY1, PetF-2,Fd1, OsFd1, ADI1, OsADI1,OsFd3, Fd3
41982	26085678	Qiao B., Zhang Q., Liu D., Wang H., Yin J., Wang R., He M., Cui M., Shang Z., Wang D., Zhu Z.	A calcium-binding protein, rice annexin OsANN1, enhances heat stress tolerance by modulating the production of H2O2.	J. Exp. Bot.			2015	CDPK24,ANN2	OsCDPK24, OsCPK24, OsCDPK14, CPK24,OsANN2, OsANN1, ANN1
41983	26098425	Zhao X., Xu M., Wei R., Liu Y.	Expression of OsCAS (Calcium-Sensing Receptor) in an Arabidopsis Mutant Increases Drought Tolerance.	PLoS ONE	10(6)	e0131272	2015	STR11	OsStr11, OsCAS, Cas
41984	26082401	Guo M., Ruan W., Li C., Huang F., Zeng M., Liu Y., Yu Y., Ding X., Wu Y., Wu Z., Mao C., Yi K., Wu P., Mo X.	Integrative Comparison of the Role of the PHOSPHATE RESPONSE1 Subfamily in Phosphate Signaling and Homeostasis in Rice.	Plant Physiol.	168(4)	1762-76	2015	miR827,PT2,PHR2,PHR3,IPS1,PHR1	miR827a, OsmiR827a, miR827, osa-miR827, osa-MIR827, OsMiR827, miR827b, osa-miR827b, osa-MIR827b,OsPT2, PTH1-2, OsPht1;2, PHT1;2, OsPHT1;2,OsPHR2, Os-PHR2,OsPHR3, Os-PHR3, OsPHL1, PHL1 ,OsIPS1,OsPHR1
41985	26149652	Xu Q., Ni H., Zhang J., Lan Y., Ren C., Zhou Y.	Whole-genome expression analysis of Rice black-streaked dwarf virus in different plant hosts and small brown planthopper.	Gene			2015		
41986	26200336	Su J., Hu C., Yan X., Jin Y., Chen Z., Guan Q., Wang Y., Zhong D., Jansson C., Wang F., Schn?rer A., Sun C.	Expression of barley SUSIBA2 transcription factor yields high-starch low-methane rice.	Nature	523(7562)	602-6	2015	SSI,SBE4,SUT5,WRKY87,AGPS2,SBE1,GBSSII,SBE3,WX1,PHS8,UGP1,RSUS1	OsSSI, SSS 1, SSS1, SS1, OsSS1, SSSI, OsSSSI,RBE4, OsSBE4, BEIIa, QEIIb, BEIIA, OsBEIIa,OsSUT5(t), OsSUT5Z, OsSUT5,OsWRKY87, OsSUSIBA2-like,OsAGPS2a, AGPS2A, AGPS2B, OsAGPS2, osagps2, APS2, APS2a, APS2b, AGPS2a, APGS2b, OsAGPS2b, AGPP, GAS8, OsAPS2, OsAPS2a, OsAPS2b,sbe1, Rbe1. Sbe1, sbe1*(QEI), RBE1, BEI, SBE I, QEI, OsBEI, BE1, OsSBE1, OsSBEI, SBEI,GBSS2, OsGBSSII, OsGBSS2,SBEIII*, SBEIII, Sbe3, RBE3, QEIIa, QEIIA, BEIIb, BEIIB, SBEIIb, OsBEIIb, sbe3, SBE III, OsSBEIIb, SBEIIb,wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx,ISA1, OsISA1, ISA, OsISA, PHS8/ISA1, OsPHS8, ISA I, OsISA I, ISAI, OsISAI,Ugp1, OsUgp1, UGP2, UGP3,sus1, RSus1(t), SUS1, SS2, OsScS2, RSs2, RSus1, SuSy1, OsSUS1, RSS2, RSus2, OsRSUS1
41987	25869323	Singh U.M., Metwal M., Singh M., Taj G., Kumar A.	Identification and characterization of calcium transporter gene family in finger millet in relation to grain calcium content.	Gene	566(1)	37-46	2015	ACA2,ECA2,ACA9,TPC1,CAX7,ACA5,ACA11,ACA3,CAX2,ACA7,CAX8,CAX4,CAX1A,YCHF1,CAX3,CAX1B,ACA6,ACA1	osACA2, OsACA10, OsPM12ATP,OsECA2, OsER3ATP3 ,osACA9, OsACA2, ACA2, OsPM2ATP9,OsTPC1, Tpc1, OsCC1, OsCL1 pore,OsCAX7, OsNCX12, NCX12, OsNaCa11exA ,osACA5, OsACA9, ACA9, OsACA5, OsPM12ATP4, PM12ATP4,osACA11, OsACA6, OsACA5, OsPM4ATP8,osACA3, OsACA4, OsPM3ATPB,OsCAX2, CAX5, OsNCX7, OsNCX7.1, OsNCX7.2, NCX7, OsVCX2, OsOSCA1.2, OSCA1.2,osACA7, OsACA6, ACA6, OsACA7, OsPM5ATP4, PM5ATP4 ,OsCAX8, OsNCX13, NCX13, OsNaCa11exB, OsCCX5, CCX5, CCX5_Ath,CAX2, OsCAX2, OsCAX4, OsSTA47, OsNCX3, NCX3,OsCAX1a, CAX1a, CAX1, OsCAX1, OsNCX2, OsNCX2.1, OsNCX2.2, NCX2, OsVCAX1a,OsYchF1, YchF1, OsPM8ATP ,OsCAX3, CAX6, OsNCX9, OsNCX9.1, OsNCX9.2, NCX9,OsCAX1b, CAX1b, CAX3, OsNCX10, NCX10,osACA6, OsACA1, OsACA6, OsPM1ATPaseII, ACA3,osACA1, OsACA1, OsACA3, OsPM3ATP2
41988	26147619	Wang Y., Xiong G., Hu J., Jiang L., Yu H., Xu J., Fang Y., Zeng L., Xu E., Xu J., Ye W., Meng X., Liu R., Chen H., Jing Y., Wang Y., Zhu X., Li J., Qian Q.	Copy number variation at the GL7 locus contributes to grain size diversity in rice.	Nat. Genet.	47(8)	944-8	2015	_,_,GW7,_	GL7-S2,GL7-S1,GL7, OsGL7, OsGW7, qGW7, qGL7, SLG7, GL7/GW7/SLG7, qPY7, GL7/SLG7, Chalk7, OsChalk7,
41989	26147620	Wang S., Li S., Liu Q., Wu K., Zhang J., Wang S., Wang Y., Chen X., Zhang Y., Gao C., Wang F., Huang H., Fu X.	The OsSPL16-GW7 regulatory module determines grain shape and simultaneously improves rice yield and grain quality.	Nat. Genet.	47(8)	949-54	2015	_,GW8,GW7,_	OsTON1b, TON1b,SPL16, OsSPL16, SLP1, OsSLP1, qGW8, OsGW8,GL7, OsGL7, OsGW7, qGW7, qGL7, SLG7, GL7/GW7/SLG7, qPY7, GL7/SLG7, Chalk7, OsChalk7,OsTON2, TON2
41990	26176923	Yang S., Wang L., Huang J., Zhang X., Yuan Y., Chen J.Q., Hurst L.D., Tian D.	Parent-progeny sequencing indicates higher mutation rates in heterozygotes.	Nature	523(7561)	463-7	2015		
41991	26185232	DeFries R., Fanzo J., Remans R., Palm C., Wood S., Anderman T.L.	Global nutrition. Metrics for land-scarce agriculture.	Science	349(6245)	238-40	2015		
41992	26210810	Zhu X., Liang S., Yin J., Yuan C., Wang J., Li W., He M., Wang J., Chen W., Ma B., Wang Y., Qin P., Li S., Chen X.	The DnaJ OsDjA7/8 is essential for chloroplast development in rice (Oryza sativa).	Gene			2015	PSBA,DJA8,_,CAB1R,CAB2R,PSAA	PsbA, psbA, OsPsbA, PSBD1, OsPSBD1, psbD1,OsDjA8, DjA8,OsDjA7, OsDnaJ,cab1R, LHCP, CAB, OsLhcb1, Lhcb1, Cab1, OsCAB1, Lhcb1b, OsLhcb1b, CAB2R,Oscab2R, CAB-2, OsLhcp, Lhcb1, Lhcb1a, OsLhcb1, OsLhcb1a ,PsaA, psaA, PsAA1, psaA1
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41995	26156223	Poursarebani N., Seidensticker T., Koppolu R., Trautewig C., Gawro?ski P., Bini F., Govind G., Rutten T., Sakuma S., Tagiri A., Wolde G.M., Youssef H.M., Battal A., Ciannamea S., Fusca T., Youssef H.M., Nussbaumer T., Pozzi C., B?rner A., Lundqvist U., Komatsuda T., Salvi S., Tuberosa R., Uauy C., Sreenivasulu N., Rossini L., Schnurbusch T.	The Genetic Basis of Composite Spike Form in Barley and "Miracle-Wheat".	Genetics			2015		
41996	26200334	Bodelier P.L.	Sustainability: Bypassing the methane cycle.	Nature	523(7562)	534-5	2015		
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41998	26228121	Wang J., Normile D.	Q&A. Former head of China's genome powerhouse starts new chapter.	Science	349(6247)	463	2015		
41999	26193260	Huang L., Zhang H., Hong Y., Liu S., Li D., Song F.	Stress-Responsive Expression, Subcellular Localization and Protein-Protein Interactions of the rice metacaspase Family.	Int J Mol Sci	16(7)	16216-41	2015	MC4,MC3,_,_,LSD1,MC6,MC8,_,_,MC7,MC2,MC1,MC5	OsMC4,OsMC3, OsSTA102,OsLOL1, OsSTA289, OsLSD1,OsLOL2,OsLSD1, OsLOL1, OsLSD1.1, LSD1.1,OsMC6,OsMC8,OsLSD3,OsLSD2,OsMC7,OsMC2,OsMC1,OsMC5
42000	26172270	Guo C., Luo C., Guo L., Li M., Guo X., Zhang Y., Wang L., Chen L.	OsSIDP366, a DUF1644 gene, positively regulates responses to drought and salt stresses in rice.	J Integr Plant Biol			2015	_,_,_,_,_,_,_,_,ONAC2,SIDP361,DCP2,SIDP301,SIDP366,HAK5,_	,,,,,Cen8.t01003, OsPABPC2, PABPC2,OsPABPC3, PABPC3,OsPABPC1, PABPC1,SNAC1, snac1, OsNAC9, ONAC002, ONAC2, ONAC033, ONAC33, ONAC043, ONAC43, ONAC044, ONAC44, OsNAC19, NAC19, SNAC1/ONAC002, OsSNAC1, OsNAC9, OsNAC1,OsSIDP361,OsDCP2, NUDX16, OsNUDX16,OsSIDP301,OsSIDP366,OsHAK5, FCO13, OsFCO13,
42001	26191072	Wu J., Zhang Z., Zhang Q., Han X., Gu X., Lu T.	The molecular cloning and clarification of a photorespiratory mutant, oscdm1, using enhancer trapping.	Front Genet	6	226	2015	SHMT1	OsSHM1, SHM1, OsSHMT1, CDM1, OsCDM1, OsSHTM3, SHTM3, OsSHMT, SHMT
42002	26205956	Du W., Cheng J., Cheng Y., Wang L., He Y., Wang Z., Zhang H.	Physiological characteristics and related gene expression of after-ripening on seed dormancy release in rice.	Plant Biol (Stuttg)			2015	HYPRP5,_,SDR4,NCED1,NCED3,GH3-8,ABA8OX1,GA2OX1,VP1	qLTG-3-1(t), qLTG3-1, OsHyPRP05, OsHyPRP5, HyP/GRP05, HyP/GRP5,OsILR1,ILR1,Sdr4, OsSdr4, OsSdr4-n, OsSdr4-k, OsSdr4L, Sdr4L ,OsNCED1, OsCCD4a, CCD4a,OSNCED3, OsNCED-3, OsNCED3, OsNCED3a, NCED3a, OsNCED4, NCED4, OsNECD2, OsNCED2b, NCED2b ,OsGH3-8, OsMGH3, OsGH3.8, GH3.8, OsGH3-2,OsABA8OX1, CYP707A5, OsCYP707A5, ABA8ox1, OsABA8ox1, OsABA8'OH1, ABA8'OH1 ,OsGA2ox1, ga2ox-1, OsGA2ox-1, ga2ox, ga2ox 1, GA2ox1,Vp1* (OSVP1), OsVP1, OsVp1, Vp1, ABI3, OsABI3, OsLFL4, OsVp-1, OSVP1
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42004	26202491	Li X., Jiang Y., Ji Z., Liu Y., Zhang Q.	BRHIS1 suppresses rice innate immunity through binding to monoubiquitinated H2A and H2B variants.	EMBO Rep.	16(9)	1192-1202	2015	_,_,_,_,_,H2B.7,EDA16,TRX3,RLCK266,PR10B,POXGX9	H2A.Xa,H2A.3,prx41, OsPrx41, OsPOX8.1, POX8.1, OsPOD2, POD2,H2A.Xb,OsTINP1,OsH2B.7, OsFBO1, FBO1,BRHIS1, Os BRHIS1, OsEDA16, CHR725, OsCHR725,  OsRING433, RING433,OsTRXh10, TRXh10, OsTRX2, TRX2, TRXF, OsTRXF, OsTrx03, Trx03, OsTrx3, Trx3,OsRLCK266, OsSIRK1, SIRK1, OsMRLK60, MRLK60,RPR10b, PR-10b, PR10b, PBZ1, PBZ-1, OsPBZc, OsPR10b, BetV, OsBetV,POXgX9, OsPOXgX9, prx112, OsPrx112
42005	26148492	Azevedo G.C., Cheavegatti-Gianotto A., Negri B.F., Hufnagel B., E Silva Lda C., Magalhaes J.V., Garcia A.A., Lana U.G., de Sousa SM., Guimaraes C.T.	Multiple interval QTL mapping and searching for PSTOL1 homologs associated with root morphology, biomass accumulation and phosphorus content in maize seedlings under low-P.	BMC Plant Biol.	15	172	2015		
42006	26220694	Fan X., Feng H., Tan Y., Xu Y., Miao Q., Xu G.	A putative 6 trans-membrane nitrate transporter OsNRT1.1b plays a key role in rice under low nitrogen.	J Integr Plant Biol			2015	NRT1	OsNRT1, OsNRT1;1, OsNRT1.1, OsNRT1.1a, OsNRT1.1b, NRT1.1, NRT1.1a, NRT1.1b, OsNPF8.9, NPF8.9 , OsNRT1.1B
42007	26143250	Cao H., Li X., Wang Z., Ding M., Sun Y., Dong F., Chen F., Liu L., Doughty J., Li Y., Liu Y.X.	histone H2B Monoubiquitination Mediated by HISTONE MONOUBIQUITINATION1 and HISTONE MONOUBIQUITINATION2 Is Involved in Anther Development by Regulating Tapetum Degradation-Related Genes in Rice.	Plant Physiol.	168(4)	1389-405	2015	HUB2,OSC4,UDT1,CYP703A3,_,RAG,CP1,AP37 ,MS2,CYP704B2,EAT1	OsHUB2, FRRP1, DLN241, OsDLN241,  OsRING378, RING378,Osc4, OsC4, Osg4B, OsLTPc1, OsLtpIII.1, C4,Udt1, bHLH164, OsUDT1, OsbHLH164 ,OsCYP703A3,OsHUB1, HUB1, SIP20,  OsRING377, RING377,MADS3, OsMADS3, OsMADS3(t), RMADS222, RAG1, rf3,OsCP1, Os CP1,OsAP37,OsMS2, OsDPW, DPW, DPW1, OsDPW1, OsFAR2, FAR2,OsCYP704B2,OsEAT1, OsbHLH141, EAT1/DTD1, bHLH141, DTD1, DTD, DLN120, OsDLN120
42008	26134707	Singh A.K., Kumar R., Tripathi A.K., Gupta B.K., Pareek A., Singla-Pareek SL.	Genome-wide investigation and expression analysis of Sodium/Calcium exchanger gene family in rice and Arabidopsis.	Rice (N Y)	8(1)	54	2015	CAX2,CAX1A,_,_,_,CAX7,CAX3,CCX3,CCX1,CAX1C,CCX4,CAX1B,CAX8,CDT1,CAX4	OsCAX2, CAX5, OsNCX7, OsNCX7.1, OsNCX7.2, NCX7, OsVCX2, OsOSCA1.2, OSCA1.2,OsCAX1a, CAX1a, CAX1, OsCAX1, OsNCX2, OsNCX2.1, OsNCX2.2, NCX2, OsVCAX1a,OsEFCAX1, OsNCX1, OsNCX1.1, OsNCX1.2, NCX1, OsNCL1, NCL1,OsEFCAX2, OsNCX4, OsNCX4.1, OsNCX4.2, NCX4, OsNCL2, NCL2,OsMHX, OsMHX2, MHX2, OsNCX14, OsNCX14.1, OsNCX14.2, NCX14, OsMHX1, MHX1,OsCAX7, OsNCX12, NCX12, OsNaCa11exA ,OsCAX3, CAX6, OsNCX9, OsNCX9.1, OsNCX9.2, NCX9,OsCCX3, OsNCX11, NCX11,OsCCX1, OsNCX6, NCX6,OsCAX1c, CAX1c, CAX4, OsNCX5, OsNCX5.1, OsNCX5.2, NCX5,OsCCX4, OsNCX15, NCX15,OsCAX1b, CAX1b, CAX3, OsNCX10, NCX10,OsCAX8, OsNCX13, NCX13, OsNaCa11exB, OsCCX5, CCX5, CCX5_Ath,OsCDT1, OsCCX2, CCX2, OsNCX8, NCX8,CAX2, OsCAX2, OsCAX4, OsSTA47, OsNCX3, NCX3
42009	26193322	Mohanta T.K., Mohanta N., Bae H.	Identification and Expression Analysis of PIN-Like (PILS) Gene Family of Rice Treated with Auxin and Cytokinin.	Genes (Basel)	6(3)	622-40	2015	_,PILS6B,_,_,_,_,PILS1	OsPILS7a, PILS7a, OsPINL2,OsPILS6b, PILS6b,OsPILS2, PILS2,OsPILS7b, PILS7b,OsPILS6a, PILS6a,OsPILS5, PILS5,OsPILS1
42010	26025521	Byun M.Y., Lee J., Cui L.H., Kang Y., Oh T.K., Park H., Lee H., Kim W.T.	Constitutive expression of DaCBF7, an Antarctic vascular plant Deschampsia antarctica CBF homolog, resulted in improved cold tolerance in transgenic rice plants.	Plant Sci.	236	61-74	2015	SIP2,DR8,REM4.1,LIP5,_,_,_,_,_,_,_,CPN60BETA1,_	Sip2, OsARD1, ARD1, OsIDI1, IDI1, OsIDI1L/OsARD1,OsDR8, OsXNP, FOXRED1,OsREM4.1,OsLEA24, LEA24, WSI724, OsWSI724, OsLIP5,,,,,,,,OsCPn60beta1, OsCPn60b1, CPn60b1,
42011	26133169	Yang Y.W., Chen H.C., Jen W.F., Liu L.Y., Chang M.C.	Comparative Transcriptome Analysis of Shoots and Roots of TNG67 and TCN1 Rice Seedlings under Cold Stress and Following Subsequent Recovery: Insights into Metabolic Pathways, Phytohormones, and Transcription Factors.	PLoS ONE	10(7)	e0131391	2015	WRKY1,WRKY24,RR4,NAC6,IAA23,WRKY53,WRKY71,_	OsWRKY1, OsWRKY1v2,OsWRKY24,rr4, OsRR4, Rra3, OsRRA3,OsNAC6, ONAC048, NAC48, SNAC2, SNAC2/OsNAC6, OsNAC6/ONAC048, OsSNAC2, SNAC-2, OsSNAC-2, OsNAC2,OsIAA23,OsWRKY53, WRKY-53,OsWRKY71, WRKY-71,HMGB
42012	26140668	Yu C., Sun C., Shen C., Wang S., Liu F., Liu Y., Chen Y., Li C., Qian Q., Aryal B., Geisler M., Jiang de A., Qi Y.	The auxin transporter, OsAUX1, is involved in primary root and root hair elongation and in Cd stress responses in rice (Oryza?sativa L.).	Plant J.	83(5)	818-30	2015	RAU1,HMA5,HMA6,HMA9,CYCB1;1,GCC7	OsLAX1, OsRAU1, OsAUX1, LAX1, AUX1,OsHMA8, osHMA5, HMA8, OsHMP27, HMP27,OsHMA5, osHMA6, HMA5, OsHMP11, HMP11,OsHMA9 ,oshma9-1, oshma9-2, HMA9, OsHMP33, HMP33,CycB1;1, CycB1;os;1, Orysa;CycB1;1, OsCycB1;1, CyclaZm, CYCIaZm, OsCYCIaZm, OsCYCB1;4,HMA3, OsHMA3, OsHMA3a, OsHMA3n, osHMA3, OsHMP34, HMP34
42013	26025522	Takano S., Matsuda S., Funabiki A., Furukawa J., Yamauchi T., Tokuji Y., Nakazono M., Shinohara Y., Takamure I., Kato K.	The rice RCN11 gene encodes beta1,2-xylosyltransferase and is required for plant responses to abiotic stresses and phytohormones.	Plant Sci.	236	75-88	2015	RR6,RR9,RR1	OsRR6, rr6, Rra6, OsRRA6,OsRR9, Rra1, OsRRA1, OsRR10, RR10,rr1, OsRR1, Rra9, OsRRA9
42014	26121094	Xu Y., Zong W., Hou X., Yao J., Liu H., Li X., Zhao Y., Xiong L.	OsARID3, an AT-rich Interaction Domain-containing protein, is required for shoot meristem development in rice.	Plant J.	83(5)	806-17	2015	IPT3,YUCCA4,ARID5,GH3-4,OSH1,OSH43,ARID2,OSH15,IPT2,ARID1,JAR1,TLD1,YUCCA1,IPT4,IPT7,ARID4,SIP5,GH3-8,ARID6,YUCCA5,OSKN2,YUCCA6,GH3-11	OsIPT3,OsYUCCA4, OsYUC4, YUC4, YUCCA6, OsYUCCA6,OsARID5,OsGH3-4, OsGH3.4, GH3.4,OSKN1, Oskn1, OsKN1, OSH1/Oskn1, HB75,OsH43, H43,OsSTA71, OsARID,OSH15, OsH15, OSKN3, Oskn3, HOS3, D6, d6, OSH15/Oskn3, HB253, H15, OsKNOX3, KNOX3,OsIPT2,OsARID1,OsJAR1, OsGH3.5, GH3.5, OsGH3-5, GH3-5,OsGH3-13, GH3-13, TLD1/OsGH3.13, TLD1, OsGH3.13, TLD2,OsYUCCA1, OsYUC1, YUC1,OsIPT4,OsIPT7,OsARID4,OsARID3, ARID3, OsSIP5 ,OsGH3-8, OsMGH3, OsGH3.8, GH3.8, OsGH3-2,OsARID6,OsYUCCA5, OsYUC5, YUC5,OsKn2, OsH71, HOS9, OSH71, OSH71/Oskn2,OsYUCCA6, OsYUC6, YUC6,OsGH3-11, OsGH3.11, GH3.11
42015	26187814	Hu J., Wang Y., Fang Y., Zeng L., Xu J., Yu H., Shi Z., Pan J., Zhang D., Kang S., Zhu L., Dong G., Guo L., Zeng D., Zhang G., Xie L., Xiong G., Li J., Qian Q.	A rare allele of GS2 enhances grain size and grain yield in rice.	Mol Plant			2015	GS2,MIR396C	OsGRF4, GRF4, GS2/OsGRF4, PT2, GLW2, GS2/GL2, LGS1, OsLGS1,miR396c, osa-miR396c, osa-MIR396c, osa-miR396c-3p, osa-miR396c-5p, OsmiR396c
42016	26220952	Ueda Y., Siddique S., Frei M.	A novel gene OsORAP1 enhances cell death in ozone stress in rice (Oryza sativa L.).	Plant Physiol.			2015	WRKY45,SH11,MIR528,OG1,AAO5,AAO1,NH1,AAO2,ORAP1,TIFY10C	OsWRKY45, OsWRKY45-1, OsWRKY45-2, WRKY45-1, WRKY45-2,OsJAmyb, JAmyb, OsJAMyb, OsMYB21, MYB21, Os2R_MYB91, 2R_MYB91, OgSH11, OsSH11,miR528, Osa-miR528, OsmiR528, OsMIR528, osa-MIR528, miR528*, osa-miR528, osa-miR528-5p, MIR528-T1, MIR528-T2,OsOPR7, OPR7, OsOPR13, OsOPR3, OsOPR5, OsOPR9, OsOPR08-1,  OPR13, OPR3, OPR5, OPR9, OPR08-1, OsOPR8, OPR8,OsAAO5,OsAAO1,OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2, DLN5, OsDLN5,  OsBTBA1, BTBA1,OsAAO2, L-APX, RIP5, OsRIP5,OsORAP1, OzT9, AO, OsAAO4, AAO4,OsJAZ7, JAZ7, OsJAZ 8, OsJAZ8, Os-JAZ8, JAZ8, OsTIFY10c, OsTIFY10c/OsJAZ8
42017	26129988	H?ller S., Ueda Y., Wu L., Wang Y., Hajirezaei M.R., Ghaffari M.R., von Wir?n N., Frei M.	Ascorbate biosynthesis and its involvement in stress tolerance and plant development in rice (Oryza sativa L.).	Plant Mol. Biol.	88(6)	545-60	2015	GGP,MIOX,_,_,_	OsGGP,OsMIOX,OsGME1, GME1,OsGME2, GME2,
42018	26165755	Hong W., Qian D., Sun R., Jiang L., Wang Y., Wei C., Zhang Z., Li Y.	OsRDR6 plays role in host defense against double-stranded RNA virus, Rice Dwarf Phytoreovirus.	Sci Rep	5	11324	2015	SHL2	shl2, SHL2, sh2, OsRDR6, RDR6
42019	26025528	Zhu N., Cheng S., Liu X., Du H., Dai M., Zhou D.X., Yang W., Zhao Y.	The R2R3-type MYB gene OsMYB91 has a function in coordinating plant growth and salt stress tolerance in rice.	Plant Sci.	236	146-56	2015	MSL16,ALDH18B2,SOS1,PROT,LEA3-1,NHX1,RAB16A,SLR1,RS2	OsMSL16,P5CS2, OsP5CS2, OsALDH18B2 ,OsSOS1, OsNHA1, NHA1, SOS1/NHX7, NHX7, OsNHX7,OsProT, ProT, OsProT2, ProT2,OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3, OsLEA3A, LEA3A,OsNHX1, OcNHX1, OgNHX1, OrNHX1, OpNHX1, ObNHX1,Rab16A, rab21, RAB21, OsRab21, OsRAB21, OsRAB-21, OsRab16A, OsLEA29, rab16A, OsRAB16A,slr1-1, slr1, slr, GAI, OsGAI, OsSLR1, Os SLR1, OsRGA1, OsGRAS-18, OsGRAS-18, GRAS-18, GRAS18, SLR-1,OsMYB91, MYB91, OsRS2, OsMYB125, MYB125 
42020	26150107	Liu X., Feng H., Huang D., Song M., Fan X., Xu G.	Two short sequences in OsNAR2.1 promoter are necessary for fully activating the nitrate induced gene expression in rice roots.	Sci Rep	5	11950	2015	NAR2.1	OsNAR2.1, OsNRT3.1A
42021	26251883	Akamatsu A., Uno K., Kato M., Wong H.L., Shimamoto K., Kawano Y.	New insights into the dimerization of small GTPase Rac/ROP guanine nucleotide exchange factors in rice.	Plant Signal Behav	10(7)	e1044702	2015	ROPGEF5,ROPGEF7,CERK1,RAC1	OsRacGEF1, RacGEF1, OsRopGEF5, Os RopGEF5, RopGEF5, OsRopGEF7B, RopGEF7B, OsGEF19, GEF19,Os RopGEF7, OsRopGEF7, RopGEF7, OsRacGEF2, RacGEF2, OsRacGEF1, RacGEF1, OsGEF20, GEF20,OsCERK1, OsLysM-RLK9, Os-CERK1, Os-LysM-RLK9, OsLysMRLK9, OsCERK1/OsLYK9, OsLYK9, LYK9,OsRAC1, OsRac1, Os Rac1, Rac1, Os-Rac1
42022	26126957	Morita S., Yamashita Y., Fujiki M., Todaka R., Nishikawa Y., Hosoki A., Yabe C., Nakamura J., Kawamura K., Suwastika I.N., Sato M.H., Masumura T., Ogihara Y., Tanaka K., Satoh S.	Expression of a rice glutaredoxin in aleurone layers of developing and mature seeds: subcellular localization and possible functions in antioxidant defense.	Planta			2015	GRX	grx, OsGRX, OsGRX14, OsGrx9, OsGrxC2;2, GrxC2;2, OsGrxC2.2, GrxC2.2
42023	26230579	Bevilacqua C.B., Basu S., Pereira A., Tseng T.M., Zimmer P.D., Burgos N.R.	Analysis of Stress-Responsive Gene Expression in Cultivated and Weedy Rice Differing in Cold Stress Tolerance.	PLoS ONE	10(7)	e0132100	2015	_,_,_	OsNAC2,OsMYB46,OsF-BOX28
42024	26296966	Yang Y., Fu D., Zhu C., He Y., Zhang H., Liu T., Li X., Wu C.	The RING-Finger Ubiquitin Ligase HAF1 Mediates heading date 1 Degradation during Photoperiodic Flowering in Rice.	Plant Cell			2015	RFT1,HIP1,EF1,HD3A,SE1	FT-L 3, OsFTL3, FTL3, FT-L3, RFT, OsRFT1,OsHIP1, HAF1, OsHAF1,  OsRING275, RING275,Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, OsHd1,  Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21
42025	26275424	Taguchi-Shiobara F., Ota T., Ebana K., Ookawa T., Yamasaki M., Tanabata T., Yamanouchi U., Wu J., Ono N., Nonoue Y., Nagata K., Fukuoka S., Hirabayashi H., Yamamoto T., Yano M.	Natural Variation in the flag leaf Morphology of Rice Due to a Mutation of the NARROW LEAF 1 Gene in Oryza sativa L.	Genetics			2015	NAL1	nal1, cul1, GPS, SPIKE, SPIKE/LSCHL4/NAL1/GPS, SPIKE/NAL1, LSCHL4, OsNAL1
42026	26283354	Liu L., Tong H., Xiao Y., Che R., Xu F., Hu B., Liang C., Chu J., Li J., Chu C.	Activation of Big Grain1 significantly improves grain size by regulating auxin transport in rice.	Proc. Natl. Acad. Sci. U.S.A.	112(35)	11102-7	2015	BG1	OsaBG1, OsBG1
42027	26286535	Lloyd J.P., Seddon A.E., Moghe G.D., Simenc M.C., Shiu S.H.	Characteristics of Plant Essential Genes Allow for within- and between-Species Prediction of Lethal Mutant Phenotypes.	Plant Cell			2015	_,SHL2,SHO1,SHL4,PUB15,SKIPA,VP1,PIE1,TDD1,ADL1,WAF1,_,TATC,_,_,GELP112,MRP13,MIT	,shl2, SHL2, sh2, OsRDR6, RDR6,sho1, DCL4, OsDCL4, Os DCL4, Dcl4 ,shl4, sh4, OsAGO7, SHO2, AGO7, SHL4/SHO2,OsPUB15,  OsPUB15, PUB15,OsSKIPa, OsSKIP, SKIP,Vp1* (OSVP1), OsVP1, OsVp1, Vp1, ABI3, OsABI3, OsLFL4, OsVp-1, OSVP1,OsPIE1, CHR709, OsCHR709,OsTDD1, ASB1, OASB1, OsASbeta1, ASbeta1, TDD1/OASB1,OsADL1,OsWAF1, waf1, waf1-1, waf1-2, HEN1, OsHEN1,,OsTATC, OsTatC, TatC,OsRH36,OsVPS22,OsGELP112, WDL1,OsABCC13, OsMRP13, OsMRP5,OsMIT
42028	26283388	Yamaji N., Sakurai G., Mitani-Ueno N., Ma J.F.	Orchestration of three transporters and distinct vascular structures in node for intervascular transfer of silicon in rice.	Proc. Natl. Acad. Sci. U.S.A.			2015	SIET3,SIET5,LSI6,Z3,LSI1,LSI3,LSI2	OsSIET3,OsSIET5,Lsi6, OsNIP2;2, NIP2-2, OsLsi6, OsNIP2.2/OsLsi6, OsNIP2.2, NIP2.2,OsZ3, z3, SIET4, OsSIET4,lsi1, NIP2-1, OsNIP2;1, NIP2;1, OsLsi1, lsi(t), OsNIP2.1/OsLsi1/OsSIIT1, OsNIP2.1, NIP2.1,Lsi3, OsLsi3, Lsi3/SIET2, SIET2,Lsi2, SIET1, OsLsi2, OsSIET1
42029	26290940	Gasselhuber B., Carpena X., Graf M.M., Pirker K.F., Nicolussi A., S?ndermann A., Hofbauer S., Zamocky M., Furtm?ller PG., Jakopitsch C., Oostenbrink C., Fita I., Obinger C.	Eukaryotic Catalase-Peroxidase: The Role of the Trp-Tyr-Met Adduct in Protein Stability, Substrate Accessibility, and Catalysis of Hydrogen Peroxide Dismutation.	Biochemistry			2015		
42030	26307379	Zhao Y., Cheng S., Song Y., Huang Y., Zhou S., Liu X., Zhou D.X.	The Interaction between Rice ERF3 and WOX11 Promotes crown root Development by Regulating Gene Expression Involved in Cytokinin Signaling.	Plant Cell			2015	IAA31,ERF3,PLT8,IAA23,CRL4,CRL1,RR2,RR3,WOX11,RR1,IAA5	OsIAA3, IAA3, OsIAA31, OsIAA30, IAA30,AP37, OsAP37, OsERF3, OsERF#075, OsERF075, OsERF75, ERF75, AP2/EREBP#004, AP2/EREBP4, OsBIERF2, BIERF2, DLN23, OsDLN23,OsPLT8, CRL5, OsCRL5, AP2/EREBP141, AP2/EREBP#141 ,OsIAA23,OsGNOM1, GNOM1, CRL4/GNOM1, CRL2/CRL3,crl1, crl1*, ARL1, ARL1/CRL1, OsLBD3-2, LBD3-2, OsCRL1,rr2, Osrr2, OsRR2, Rra10, OsRRA10,OSRR3, OsRR3, rr3, Rra7, OsRRA7,OsWOX11, Os WOX11, OsWOX12A,rr1, OsRR1, Rra9, OsRRA9,OsIAA5
42031	26287768	Tanabe S., Onodera H., Hara N., Ishii-Minami N., Day B., Fujisawa Y., Hagio T., Toki S., Shibuya N., Nishizawa Y., Minami E.	The elicitor-responsive gene for a GRAS family protein, CIGR2, suppresses cell death in rice inoculated with rice blast fungus via activation of a heat shock transcription factor, OsHsf23.	Biosci. Biotechnol. Biochem.		1-7	2015	HSFB1,CIGR2	HSfB1, OsHsfB1, OsHsf-23, HSF23, OsHsf23, OsHSF23, TBF1 ,OsCIGR2, OsGRAS-36, OsGRAS36, GRAS-36, GRAS36
42032	26275661	Wang H., Meng J., Peng X., Tang X., Zhou P., Xiang J., Deng X.	Rice WRKY4 acts as a transcriptional activator mediating defense responses toward Rhizoctonia solani, the causing agent of rice sheath blight.	Plant Mol. Biol.			2015	PR1A,WRKY4,PR1B,PR10A,_	OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1, OsPR1b, PR1alpha, OsPR1alpha,OsWRKY4, WRKY122, OsWRKY122,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1, OsPR1a, PR1a,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsPR5, PR5
42033	26300907	Kim N., Moon S.J., Min M.K., Choi E.H., Kim J.A., Koh E.Y., Yoon I., Byun M.O., Yoo S.D., Kim B.G.	Functional characterization and reconstitution of ABA signaling components using transient gene expression in rice protoplasts.	Front Plant Sci	6	614	2015	SAPK9,PP2C6,PP2C8,SAPK2,PYL/RCAR2,BZIP46,PYL/RCAR5	OsSAPK9, OsSnRK2.9, SnRK2.9,OsPP2C06/OsABI2, OsPP2C06, OsPP2C6, OsABI2, OsPP10, ABI2, OsABIL1, ABIL1,OsPP2C08, PP2C08, OsPP2C8, OsPP12,OsSAPK2, OsSnRK2.2, SnRK2.2,OsPYL/RCAR2, PYL2, OsPYL2, OsPYL3, PYL3,ABL1, bZIP46, OsABL1, OsbZIP46, OsAREB8, OsABF2, ABF2, OsABF3, ABF3, OsbZIP46CA1, OsZIP46, ZIP46, OsbZIP46/OsABF2,OsPYL/RCAR5, PYL5, OsPYL5, OsPYL11, PYL11
42034	26318143	Wang F., Wang M., Liu Z., Shi Y., Han T., Ye Y., Gong N., Sun J., Zhu C.	Different responses of low grain-Cd-accumulating and high grain-Cd-accumulating rice cultivars to Cd stress.	Plant Physiol. Biochem.	96	261-269	2015	PCR1	OsFWL5, FWL5, OsPcr1, OsPCR1, OsFWL5/OsPCR1, OsFWL7, FWL7
42035	26283047	Gu B., Zhou T., Luo J., Liu H., Wang Y., Shangguan Y., Zhu J., Li Y., Sang T., Wang Z., Han B.	An-2 Encodes a Cytokinin Synthesis Enzyme That Regulates awn length and Grain Production in Rice.	Mol Plant			2015	AN1,LABA1	An-1, OsbHLH093, RAE1, An-1/RAE1, RAE1/An-1, OsRAE1, OsAn-1, OgRAE1,LOGL6, OsLOGL6, An-2
42036	26276868	Byeon Y., Choi G.H., Lee H.Y., Back K.	Melatonin biosynthesis requires N-acetylserotonin methyltransferase activity of caffeic acid O-methyltransferase in rice.	J. Exp. Bot.			2015	ROMT9	COMT, OsCOMT, ROMT-9, OsCOMT1, OsCAldOMT1, CAldOMT1, OsOMT, OsCOMT15, COMT15
42037	26286751	Yung Y.L., Cheung M.Y., Miao R., Fong Y.H., Li K.P., Yu M.H., Chye M.L., Wong K.B., Lam H.M.	Site-Directed Mutagenesis Shows the Significance of Interactions with Phospholipids and the G-protein OsYchF1 on the Physiological Functions of the Rice GTPase-Activating Protein 1 (OsGAP1).	J. Biol. Chem.			2015	C2DP16,YCHF1	OsGAP1, GAP1, OsC2DP16,OsYchF1, YchF1, OsPM8ATP 
42038	26277722	Munir F., Hayashi S., Batley J., Naqvi S.M., Mahmood T.	Germin-like protein 2 gene promoter from rice is responsive to fungal pathogens in transgenic potato plants.	Funct. Integr. Genomics			2015	GER6	OsGLP8-7, GLP8-7, OsGER6, OsRGLP2, RGLP2, OsCDP8.7, CDP8.7
42039	25955387	Zhang H., Liu J., He F., Wang Z., Ning Y., Wang G.L.	OsHUB1 and OsHub2 interact with SPIN6 and form homo- and hetero-dimers in rice.	Plant Signal Behav	10(8)	e1039212	2015	_,RAC1,_,SPL11,_	OsHUB1, HUB1,OsRAC1, OsRac1, Os Rac1, Rac1, Os-Rac1,OsHUB2, HUB2,spl11, spl11*, OsPUB11, PUB11,  OsPUB11/SPL11, PUB11/SPL11,SPIN6, Spin6, SIP11 
42040	26290597	Liu G., Zhang K., Ai J., Su Y., Deng X., Hong Y., Wang X.	Patatin-related phospholipase A, pPLAIIIalpha, modulates the longitudinal growth of vegetative tissues and seeds in rice.	J. Exp. Bot.			2015	MATL,_,CESA8,MATL2,GID1,SD1,_,_,_,_,_,_,_,_,_,_,_,_,_,GNP1,CESA7,GA2OX1,_,CESA1,BC7,BC6,_,DEP3,PPLAIIALPHA,SLR1,PPLAIITHETA	OspPLAIIbeta, pPLAIIbeta, OspPLAIIphi, pPLAIIphi, NLD, PLP1, OspPLAIIphi/PLP1, OsMATL, MTL, OsMTL,OspPLAIIIalpha, pPLAIIIalpha,OsCesA8, OsCESA8, OS_CESA08, CesA8,OspPLAIIeta, pPLAIIeta, MATL2,gid1, OsGID1, Thl, Os GID1,sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2, OsPHQ1, OsPHq1, PHq1,OspPLAIIIgamma, pPLAIIIgamma,OspPLAIIIepsilon, pPLAIIIepsilon,OspPLAIValpha, pPLAIValpha,OspPLAIVbeta, pPLAIVbeta,OspPLAV, pPLAV,OspPLAIIepsilon, pPLAIIepsilon,OspPLAI, pPLAI ,OspPLAIIzeta, pPLAIIzeta,OspPLAIIlambda, pPLAIIlambda,OspPLAIIiota, pPLAIIiota,OspPLAIIkappa, pPLAIIkappa,OspPLAIIdelta, pPLAIIdelta,OspPLAIIIbeta, pPLAIIIbeta,GA20OX1, OsGA20ox1, 20ox1, GA20ox-1, ga20ox1, Os20ox, C20OX2, OsGA20ox2, OsGA20ox-1, GA20ox1, OsGNP1,OsCesA7, OsCESA7, OS_CESA07, OsCesA 7, CesA7,OsGA2ox1, ga2ox-1, OsGA2ox-1, ga2ox, ga2ox 1, GA2ox1,OspPLAIIIzeta, pPLAIIIzeta,OsCesA1, OsCesA-1, OsCESA1, OS_CESA01, CesA1,OsCesA4, OsCESA4, CESA4, OS_CESA04, BC11, bc7t, Bc7(t), bc-7, OsCesA 4, CesA4, FC17/CESA4, FC17, OsFC17,Bc6*, Bc6, OsCesA9, CESA9, OsCESA9, OS_CESA09, OsCesA 9, CesA9, BC88, SDBC1, OsSDBC1,OspPLAIIgamma, pPLAIIgamma,dep3, OspPLAIIIdelta, pPLAIIIdelta,OsEnS-20, OspPLAIIalpha, pPLAIIalpha, PAT2, PAT,slr1-1, slr1, slr, GAI, OsGAI, OsSLR1, Os SLR1, OsRGA1, OsGRAS-18, OsGRAS-18, GRAS-18, GRAS18, SLR-1,OspPLAIItheta, pPLAIItheta
42041	26241499	Hua Y., Ekkhara W., Sansenya S., Srisomsap C., Roytrakul S., Saburi W., Takeda R., Matsuura H., Mori H., Ketudat Cairns JR.	Identification of rice Os4BGlu13 as a beta-glucosidase which hydrolyzes gibberellin A4 1-O-beta-d-glucosyl ester, in addition to tuberonic acid glucoside and salicylic acid derivative glucosides.	Arch. Biochem. Biophys.	583	36-46	2015	BGLU6,BGLU13,BGLU12,BGLU7	Os3bglu6, Os3BGlu6, 3BGlu6,OsTAGG1, TAGG1, Os4BGlu13, 4BGlu13,Os4bglu12, Os4BGlu12, 4BGlu12, OsTAGG2, TAGG2,Os3bglu7, Os3BGlu7, 3BGLU7, BGlu7, BGlu1, bglu1
42042	26243209	Cheng C., Tarutani Y., Miyao A., Ito T., Yamazaki M., Sakai H., Fukai E., Hirochika H.	Loss of function mutations in the rice chromomethylase OsCMT3a cause a burst of transposition.	Plant J.			2015	_,MPING,TOS19,DASHENG,_,_,_,TOS17,CMT2,CMT1	OsCMT2, CMT2,mPing,Tos19, Lullaby,Dasheng,LINE1-6_OS,Osr4,Osr13, Tos5 ,Tos17, Osr21, Tos17chr10, Tos17_Chr10, Tos17chr7, Tos17_Chr7,OsCMT2, OsCMT3a, CMT3a,OsCMT1, OsCMT3b, CMT3b
42043	25953146	Hori K., Nonoue Y., Ono N., Shibaya T., Ebana K., Matsubara K., Ogiso-Tanaka E., Tanabata T., Sugimoto K., Taguchi-Shiobara F., Yonemaru J., Mizobuchi R., Uga Y., Fukuda A., Ueda T., Yamamoto S., Yamanouchi U., Takai T., Ikka T., Kondo K., Hoshino T., Yamamoto E., Adachi S., Nagasaki H., Shomura A., Shimizu T., Kono I., Ito S., Mizubayashi T., Kitazawa N., Nagata K., Ando T., Fukuoka S., Yamamoto T., Yano M.	Genetic architecture of variation in heading date among Asian rice accessions.	BMC Plant Biol.	15	115	2015		
42044	26058146	Deng W.W., Sasamoto H., Ashihara H.	Effect of caffeine on the expression pattern of water-soluble proteins in rice (Oryza sativa) seedlings.	Nat Prod Commun	10(5)	733-6	2015		
42045	25935420	Shaar-Moshe L., H?bner S., Peleg Z.	Identification of conserved drought-adaptive genes using a cross-species meta-analysis approach.	BMC Plant Biol.	15	111	2015		
42046	26259169	Dametto A., Sperotto R.A., Adamski J.M., Blasi ?A., Cargnelutti D., de Oliveira LF., Ricachenevsky F.K., Fregonezi J.N., Mariath J.E., da Cruz RP., Margis R., Fett J.P.	cold tolerance in rice germinating seeds revealed by deep RNAseq analysis of contrasting indica genotypes.	Plant Sci.	238	1-12	2015		
42047	26025049	Mutuku J.M., Yoshida S., Shimizu T., Ichihashi Y., Wakatake T., Takahashi A., Seo M., Shirasu K.	The WRKY45-Dependent Signaling Pathway Is Required For Resistance against Striga hermonthica Parasitism.	Plant Physiol.	168(3)	1152-63	2015		
42048	26019258	Wang P., Menzies N.W., Lombi E., McKenna B.A., James S., Tang C., Kopittke P.M.	Synchrotron-based X-ray absorption near-edge spectroscopy imaging for laterally resolved speciation of selenium in fresh roots and leaves of wheat and rice.	J. Exp. Bot.	66(15)	4795-806	2015		
42049	26141895	Zhang S., Wang L., Ma F., Zhang X., Li Z., Li S., Jiang X.	Can arbuscular mycorrhiza and fertilizer management reduce phosphorus runoff from paddy fields?	J Environ Sci (China)	33	211-8	2015		
42050	25961557	Ji H., Ding Y., Liu X., Li L., Zhang D., Li Z., Sun J., Lashari M.S., Joseph S., Meng Y., Kuzyakov Y., Pan G.	Root-Derived Short-Chain Suberin Diacids from Rice and Rape Seed in a Paddy Soil under Rice Cultivar Treatments.	PLoS ONE	10(5)	e0127474	2015		
42051	25947970	Cui X.D., Wang Y.J., Hockmann K., Zhou D.M.	Effect of iron plaque on antimony uptake by rice (Oryza sativa L.).	Environ. Pollut.	204	133-40	2015		
42052	25938231	Zhang G.Y., Liu R.R., Zhang C.Q., Tang K.X., Sun M.F., Yan G.H., Liu Q.Q.	Manipulation of the rice L-galactose pathway: evaluation of the effects of transgene overexpression on ascorbate accumulation and abiotic stress tolerance.	PLoS ONE	10(5)	e0125870	2015		
42053	25983205	Ma J.F., Yamaji N.	A cooperative system of silicon transport in plants.	Trends Plant Sci.	20(7)	435-42	2015		
42054	26008792	Xie Z., Si W., Gao R., Zhang X., Yang S.	Evolutionary analysis of RB/Rpi-blb1 locus in the Solanaceae family.	Mol. Genet. Genomics			2015		
42055	26029330	Jin B., Zhou X., Jiang B., Gu Z., Zhang P., Qian Q., Chen X., Ma B.	Transcriptome profiling of the spl5 mutant reveals that spl5 has a negative role in the biosynthesis of serotonin for rice disease resistance.	Rice (N Y)	8	18	2015	_,ASB2,TDC1,TDC3,_,IGPS,TSA,SPL5,WRKY14	IGPS,OASB2, OsASB2, TRP4, OsTRP4,OsTDC, TDC, TDC2, OsTDC1, OsTDC4,OsTDC3, OsTDC5,IGPS,OsIGPS, TRPC, OsTRPC,OsTSA, pOsTSA, TSbeta, TSA1, OsTSA1,spl5(bl6,spl5-1), bl6, spl5, SF3b3,OsWRKY14
42056	26042132	Singh A.P., Dixit G., Mishra S., Dwivedi S., Tiwari M., Mallick S., Pandey V., Trivedi P.K., Chakrabarty D., Tripathi R.D.	Salicylic acid modulates arsenic toxicity by reducing its root to shoot translocation in rice (Oryza sativa L.).	Front Plant Sci	6	340	2015		
42057	25589060	Wang Z., Xu Y., Chen T., Zhang H., Yang J., Zhang J.	Abscisic acid and the key enzymes and genes in sucrose-to-starch conversion in rice spikelets in response to soil drying during grain filling.	Planta	241(5)	1091-107	2015		
42058	26072143	Du B., Wei Z., Wang Z., Wang X., Peng X., Du B., Chen R., Zhu L., He G.	Phloem-exudate proteome analysis of response to insect brown plant-hopper in rice.	J. Plant Physiol.	183	13-22	2015		
42059	26022255	Rebolledo M.C., Dingkuhn M., Courtois B., Gibon Y., Cl?ment-Vidal A., Cruz D.F., Duitama J., Lorieux M., Luquet D.	Phenotypic and genetic dissection of component traits for early vigour in rice using plant growth modelling, sugar content analyses and association mapping.	J. Exp. Bot.	66(18)	5555-66	2015		
42060	25973946	Delwaide A.C., Nalley L.L., Dixon B.L., Danforth D.M., Nayga R.M., Van Loo EJ., Verbeke W.	Revisiting GMOs: Are There Differences in European Consumers' Acceptance and Valuation for Cisgenically vs Transgenically Bred Rice?	PLoS ONE	10(5)	e0126060	2015		
42061	25972274	Zhang M., Shan Y., Kochian L., Strasser R.J., Chen G.	Photochemical properties in flag leaves of a super-high-yielding hybrid rice and a traditional hybrid rice (Oryza sativa L.) probed by chlorophyll a fluorescence transient.	Photosyn. Res.			2015		
42062	25951083	Fan X., Guo Q., Xu P., Gong Y., Shu H., Yang Y., Ni W., Zhang X., Shen X.	Transcriptome-wide identification of salt-responsive members of the WRKY gene family in Gossypium aridum.	PLoS ONE	10(5)	e0126148	2015		
42063	25995326	Yang C., Ma B., He S.J., Xiong Q., Duan K.X., Yin C.C., Chen H., Lu X., Chen S.Y., Zhang J.S.	MHZ6/OsEIL1 and OsEIL2 Regulate Ethylene Response of Roots and Coleoptiles and Negatively Affect salt tolerance in Rice.	Plant Physiol.			2015	EIL1A,EIN2,HKT1,EIL2	EIL1, OsEIL1, EIL1a, OsEIL1a, MHZ6/OsEIL1, MHZ6, OsMHZ6,OsEIN2, MHZ7/OsEIN2, OsEIN2/MHZ7, MHZ7 ,OsHKT1, OsHKT2;1, HKT2;1, Ni (Nipponbare)-OsHKT1, Po (Pokkali)-HKT1, OsHKT1;1, HKT1;1,OsEIL2
42064	25979979	Alter S., Bader K.C., Spannagl M., Wang Y., Bauer E., Sch?n CC., Mayer K.F.	DroughtDB: an expert-curated compilation of plant drought stress genes and their homologs in nine species.	Database (Oxford)	2015	bav046	2015		
42065	25941326	Sano N., Ono H., Murata K., Yamada T., Hirasawa T., Kanekatsu M.	Accumulation of long-lived mRNAs associated with germination in embryos during seed development of rice.	J. Exp. Bot.	66(13)	4035-46	2015		
42066	25781542	Gutsche N., Thurow C., Zachgo S., Gatz C.	Plant-specific CC-type glutaredoxins: functions in developmental processes and stress responses.	Biol. Chem.	396(5)	495-509	2015		
42067	25993896	Liang Y., Zhang D.Y., Ouyang S., Xie J., Wu Q., Wang Z., Cui Y., Lu P., Zhang D., Liu Z.J., Zhu J., Chen Y.X., Zhang Y., Luo M.C., Dvorak J., Huo N., Sun Q., Gu Y.Q., Liu Z.	Dynamic evolution of resistance gene analogs in the orthologous genomic regions of powdery mildew resistance gene MlIW170 in Triticum dicoccoides and Aegilops tauschii.	Theor. Appl. Genet.	128(8)	1617-29	2015		
42068	26052332	Thakur S., Singh P.K., Das A., Rathour R., Variar M., Prashanthi S.K., Singh A.K., Singh U.D., Chand D., Singh N.K., Sharma T.R.	Extensive sequence variation in rice blast resistance gene Pi54 makes it broad spectrum in nature.	Front Plant Sci	6	345	2015		
42069	25988582	Eom J.S., Chen L.Q., Sosso D., Julius B.T., Lin I.W., Qu X.Q., Braun D.M., Frommer W.B.	SWEETs, transporters for intracellular and intercellular sugar translocation.	Curr. Opin. Plant Biol.	25	53-62	2015		
42070	26052337	Vijayan J., Devanna B.N., Singh N.K., Sharma T.R.	Cloning and functional validation of early inducible Magnaporthe oryzae responsive CYP76M7 promoter from rice.	Front Plant Sci	6	371	2015		
42071	26054243	Pradhan S.K., Nayak D.K., Mohanty S., Behera L., Barik S.R., Pandit E., Lenka S., Anandan A.	Pyramiding of three bacterial blight resistance genes for broad-spectrum resistance in deepwater rice variety, Jalmagna.	Rice (N Y)	8(1)	51	2015		
42072	26025543	Jung H., Lee D.K., Choi Y.D., Kim J.K.	OsIAA6, a member of the rice Aux/IAA gene family, is involved in drought tolerance and tiller outgrowth.	Plant Sci.	236	304-12	2015		
42073	25937463	Lu M., Sun Q.P., Zhang D.F., Wang T.Y., Pan J.B.	Identification of 7 stress-related NAC transcription factor members in maize (Zea mays L.) and characterization of the expression pattern of these genes.	Biochem. Biophys. Res. Commun.	462(2)	144-50	2015		
42074	25979995	Crofts N., Abe N., Oitome N.F., Matsushima R., Hayashi M., Tetlow I.J., Emes M.J., Nakamura Y., Fujita N.	Amylopectin biosynthetic enzymes from developing rice seed form enzymatically active protein complexes.	J. Exp. Bot.	66(15)	4469-82	2015		
42075	26024808	Yang G.D., Xie W.Y., Zhu X., Huang Y., Yang X.J., Qiu Z.Q., Lv Z.M., Wang W.N., Lin W.X.	Effect of arsenite-oxidizing bacterium B. laterosporus on arsenite toxicity and arsenic translocation in rice seedlings.	Ecotoxicol. Environ. Saf.	120	7-12	2015		
42076	26001084	Zhang Y., Wang Z., Li L., Zhou Q., Xiao Y., Wei X., Zhou M.	Short-term complete submergence of rice at the tillering stage increases yield.	PLoS ONE	10(5)	e0127982	2015		
42077	26074936	Sun W., Xu X.H., Wu X., Wang Y., Lu X., Sun H., Xie X.	Genome-wide identification of microRNAs and their targets in wild type and phyB mutant provides a key link between microRNAs and the phyB-mediated light signaling pathway in rice.	Front Plant Sci	6	372	2015		
42078	26010143	Jung W.Y., Kim S.G., Kim H.K., Lee J.S., Han S.I., Choe S., Son B.G.	Effect of GABA Extract of Black Sticky Rice with giant embryo on Alcohol-Related Indices After Acute Alcohol Intake in Social Drinkers.	Alcohol. Clin. Exp. Res.	39(7)	1212-8	2015		
42079	26001124	Azizi P., Rafii M.Y., Mahmood M., Abdullah S.N., Hanafi M.M., Nejat N., Latif M.A., Sahebi M.	Differential Gene Expression Reflects Morphological Characteristics and Physiological Processes in Rice Immunity against Blast Pathogen Magnaporthe oryzae.	PLoS ONE	10(5)	e0126188	2015		
42080	25957646	Lu P., Qin J., Wang G., Wang L., Wang Z., Wu Q., Xie J., Liang Y., Wang Y., Zhang D., Sun Q., Liu Z.	Comparative fine mapping of the Wax 1 (W1) locus in hexaploid wheat.	Theor. Appl. Genet.	128(8)	1595-603	2015		
42081	25963517	Gayen D., Ali N., Sarkar S.N., Datta S.K., Datta K.	Down-regulation of lipoxygenase gene reduces degradation of carotenoids of golden rice during storage.	Planta	242(1)	353-63	2015		
42082	25968601	Rong Tan L., Chen Lu Y., Jing Zhang J., Luo F., Yang H.	A collection of cytochrome P450 monooxygenase genes involved in modification and detoxification of herbicide atrazine in rice (Oryza sativa) plants.	Ecotoxicol. Environ. Saf.	119	25-34	2015		
42083	25991036	Yan S., Wang Z., Liu Y., Li W., Wu F., Lin X., Meng Z.	Functional architecture of two exclusively late stage pollen-specific promoters in rice (Oryza sativa L.).	Plant Mol. Biol.	88(4-5)	415-28	2015		
42084	26125743	Wu J.D., Jiang C.P., Zhu H.S., Jiang H.Y., Cheng B.J., Zhu S.W.	Cloning and functional analysis of the promoter of a maize starch synthase III gene (ZmDULL1).	Genet. Mol. Res.	14(2)	5468-79	2015		
42085	26012494	Zhang J., Lu Z., Dai W., Song X., Peng Y., Valverde B.E., Qiang S.	Cytoplasmic-genetic male sterility gene provides direct evidence for some hybrid rice recently evolving into weedy rice.	Sci Rep	5	10591	2015		
42086	25985202	Wu H., Lv H., Li L., Liu J., Mu S., Li X., Gao J.	Genome-Wide Analysis of the AP2/ERF Transcription Factors Family and the Expression Patterns of DREB Genes in Moso Bamboo (Phyllostachys edulis).	PLoS ONE	10(5)	e0126657	2015		
42087	25948705	Zhu B., Yang Y., Li R., Fu D., Wen L., Luo Y., Zhu H.	RNA sequencing and functional analysis implicate the regulatory role of long non-coding RNAs in tomato fruit ripening.	J. Exp. Bot.	66(15)	4483-95	2015		
42088	25956882	Simkin A.J., McAusland L., Headland L.R., Lawson T., Raines C.A.	Multigene manipulation of photosynthetic carbon assimilation increases CO2 fixation and biomass yield in tobacco.	J. Exp. Bot.	66(13)	4075-90	2015		
42089	26002971	Lori M., van Verk MC., Hander T., Schatowitz H., Klauser D., Flury P., Gehring C.A., Boller T., Bartels S.	Evolutionary divergence of the plant elicitor peptides (Peps) and their receptors: interfamily incompatibility of perception but compatibility of downstream signalling.	J. Exp. Bot.	66(17)	5315-25	2015		
42090	26020828	Song Z., Zhao Y., Zhou X., Wu G., Zhang Y., Qian G., Liu F.	Identification and Characterization of Two Novel DSF-Controlled Virulence-Associated Genes Within the nodB-rhgB Locus of Xanthomonas oryzae pv. oryzicola Rs105.	Phytopathology	105(5)	588-96	2015		
42091	25957114	Ye C., Tenorio F.A., Redo?a ED., Morales-Cortezano PS., Cabrega G.A., Jagadish K.S., Gregorio G.B.	Fine-mapping and validating qHTSF4.1 to increase spikelet fertility under heat stress at flowering in rice.	Theor. Appl. Genet.	128(8)	1507-17	2015		
42092	25403331	Huang Y., Li M.Y., Wang F., Xu Z.S., Huang W., Wang G.L., Ma J., Xiong A.S.	Heat shock factors in carrot: genome-wide identification, classification, and expression profiles response to abiotic stress.	Mol. Biol. Rep.	42(5)	893-905	2015		
42093	25932633	Ferreira L.J., Azevedo V., Maroco J., Oliveira M.M., Santos A.P.	Salt Tolerant and Sensitive Rice Varieties Display Differential Methylome Flexibility under Salt Stress.	PLoS ONE	10(5)	e0124060	2015		
42094	25982586	Molla K.A., Debnath A.B., Ganie S.A., Mondal T.K.	Identification and analysis of novel salt responsive candidate gene based SSRs (cgSSRs) from rice (Oryza sativa L.).	BMC Plant Biol.	15	122	2015		
42095	25993302	Bai B., Wu J., Sheng W.T., Zhou B., Zhou L.J., Zhuang W., Yao D.P., Deng Q.Y.	Comparative Analysis of Anther Transcriptome Profiles of Two Different Rice Male Sterile Lines Genotypes under Cold Stress.	Int J Mol Sci	16(5)	11398-416	2015		
42096	26314143	Wang D., Li X., Wang D.C., Rao W., Du G.H., Yang J., Hua D.L.	[Influence of Sulfur on the Formation of Fe-Mn Plaque on Root and Uptake of Cd by Rice (Oryza sativa L.)].	Huan Jing Ke Xue	36(5)	1877-87	2015		
42097	26032497	Wu L., Taohua Z., Gui W., Xu L., Li J., Ding Y.	Five pectinase gene expressions highly responding to heat stress in rice floral organs revealed by RNA-seq analysis.	Biochem. Biophys. Res. Commun.	463(3)	407-13	2015		
42098	26022253	Lou Q., Chen L., Mei H., Wei H., Feng F., Wang P., Xia H., Li T., Luo L.	Quantitative trait locus mapping of deep rooting by linkage and association analysis in rice.	J. Exp. Bot.	66(15)	4749-57	2015		
42099	26007238	Wang W., Zhao P., Zhou X.M., Xiong H.X., Sun M.X.	Genome-wide identification and characterization of cystatin family genes in rice (Oryza sativa L.).	Plant Cell Rep.	34(9)	1579-92	2015		
42100	25976104	Wang J., Pan C., Wang Y., Ye L., Wu J., Chen L., Zou T., Lu G.	Genome-wide identification of MAPK, MAPKK, and MAPKKK gene families and transcriptional profiling analysis during development and stress response in cucumber.	BMC Genomics	16	386	2015		
42101	25969556	Delhaize E., Rathjen T.M., Cavanagh C.R.	The genetics of rhizosheath size in a multiparent mapping population of wheat.	J. Exp. Bot.	66(15)	4527-36	2015		
42102	26024443	Kitayama M., Hoover H., Middleton S., Kao C.C.	Brome mosaic virus Infection of Rice Results in Decreased Accumulation of RNA1.	Mol. Plant Microbe Interact.	28(5)	626-32	2015		
42103	26074937	De Leon TB., Linscombe S., Gregorio G., Subudhi P.K.	Genetic variation in Southern USA rice genotypes for seedling salinity tolerance.	Front Plant Sci	6	374	2015		
42104	26089150	Wang L., Hu W., Sun J., Liang X., Yang X., Wei S., Wang X., Zhou Y., Xiao Q., Yang G., He G.	Genome-wide analysis of SnRK gene family in Brachypodium distachyon and functional characterization of BdSnRK2.9.	Plant Sci.	237	33-45	2015		
42105	26058145	Kato-Noguchi H., Kitajima S.	Momilactone sensitive proteins in Arabidopsis thaliana.	Nat Prod Commun	10(5)	729-32	2015		
42106	26068787	Rathinasabapathi P., Purushothaman N., Ramprasad V.L., Parani M.	Whole genome sequencing and analysis of Swarna, a widely cultivated indica rice variety with low glycemic index.	Sci Rep	5	11303	2015		
42107	26116860	Liu H., Liu H., Zhou L., Zhang Z., Zhang X., Wang M., Li H., Lin Z.	Parallel Domestication of the Heading Date 1 Gene in Cereals.	Mol. Biol. Evol.			2015		
42108	26095078	Shu K., Meng Y.J., Shuai H.W., Liu W.G., Du J.B., Liu J., Yang W.Y.	Dormancy and germination: How does the crop seed decide?	Plant Biol (Stuttg)			2015		
42109	26052925	S?nchez MA., Cid P., Navarrete H., Aguirre C., Chac?n G., Salazar E., Prieto H.	outcrossing potential between 11 important genetically modified crops and the Chilean vascular flora.	Plant Biotechnol. J.			2015		
42110	26046301	Chen G., Hu Q., Luo L.E., Yang T., Zhang S., Hu Y., Yu L., Xu G.	Rice potassium transporter OsHAK1 is essential for maintaining potassium-mediated growth and functions in salt tolerance over low and high potassium concentration ranges.	Plant Cell Environ.			2015		
42111	26111882	Singh N., Jayaswal P.K., Panda K., Mandal P., Kumar V., Singh B., Mishra S., Singh Y., Singh R., Rai V., Gupta A., Raj Sharma T., Singh N.K.	Single-copy gene based 50?K SNP chip for genetic studies and molecular breeding in rice.	Sci Rep	5	11600	2015		
42112	26123290	Ben-Saad R., Meynard D., Ben-Romdhane W., Mieulet D., Verdeil J.L., Al-Doss A., Guiderdoni E., Hassairi A.	The promoter of the AlSAP gene from the halophyte grass Aeluropus littoralis directs a stress-inducible expression pattern in transgenic rice plants.	Plant Cell Rep.			2015		
42113	26044828	Pearce S., Huttly A.K., Prosser I.M., Li Y.D., Vaughan S.P., Gallova B., Patil A., Coghill J.A., Dubcovsky J., Hedden P., Phillips A.L.	Heterologous expression and transcript analysis of gibberellin biosynthetic genes of grasses reveals novel functionality in the GA3ox family.	BMC Plant Biol.	15	130	2015		
42114	26076132	Lin C.P., Ko C.Y., Kuo C.I., Liu M.S., Schafleitner R., Chen L.F.	Transcriptional Slippage and RNA Editing Increase the Diversity of Transcripts in Chloroplasts: Insight from Deep Sequencing of Vigna radiata Genome and Transcriptome.	PLoS ONE	10(6)	e0129396	2015		
42115	26175615	Zhu H., Liu Z., Fu X., Dai Z., Wang S., Zhang G., Zeng R., Liu G.	Detection and characterization of epistasis between QTLs on plant height in rice using single segment substitution lines.	Breed. Sci.	65(3)	192-200	2015		
42116	25457483	Hasnat M.A., Pervin M., Cha K.M., Kim S.K., Lim B.O.	Anti-inflammatory activity on mice of extract of Ganoderma lucidum grown on rice via modulation of MAPK and NF-kappaB pathways.	Phytochemistry	114	125-36	2015		
42117	26141377	Athwal N.S., Alagurajan J., Sturms R., Fulton D.B., Andreotti A.H., Hargrove M.S.	Electron self-exchange in hemoglobins revealed by deutero-hemin substitution.	J. Inorg. Biochem.			2015		
42118	26036614	Yamauchi T., Shiono K., Nagano M., Fukazawa A., Ando M., Takamure I., Mori H., Nishizawa N.K., Kawai-Yamada M., Tsutsumi N., Kato K., Nakazono M.	Ethylene Biosynthesis is Promoted by Very-Long-Chain Fatty Acids during Lysigenous Aerenchyma Formation in Rice Roots.	Plant Physiol.			2015		
42119	26031196	Qi X., Liu Y., Vigueira C.C., Young N.D., Caicedo A.L., Jia Y., Gealy D.R., Olsen K.M.	More than one way to evolve a weed: parallel evolution of US weedy rice through independent genetic mechanisms.	Mol. Ecol.	24(13)	3329-44	2015		
42120	26082161	Li E., Wu A.C., Li J., Liu Q., Gilbert R.G.	Improved understanding of rice amylose biosynthesis from advanced starch structural characterization.	Rice (N Y)	8(1)	55	2015		
42121	26110263	Shi P., Tang L., Wang L., Sun T., Liu L., Cao W., Zhu Y.	Post-Heading Heat Stress in Rice of South China during 1981-2010.	PLoS ONE	10(6)	e0130642	2015		
42122	26030358	Wu Y., Xiao N., Yu L., Pan C., Li Y., Zhang X., Liu G., Dai Z., Pan X., Li A.	Combination Patterns of Major R Genes Determine the Level of Resistance to the M. oryzae in Rice (Oryza sativa L.).	PLoS ONE	10(6)	e0126130	2015		
42123	26047696	Wang W., Liu B., Xu M., Jamil M., Wang G.	ABA-induced CCCH tandem zinc finger protein OsC3H47 decreases ABA sensitivity and promotes drought tolerance in Oryza sativa.	Biochem. Biophys. Res. Commun.	464(1)	33-7	2015		
42124	26034131	Zhang B., Wang M., Tang D., Li Y., Xu M., Gu M., Cheng Z., Yu H.	XRCC3 is essential for proper double-strand break repair and homologous recombination in rice meiosis.	J. Exp. Bot.			2015		
42125	26109439	Zhang S., Wang L., Wu W., He L., Yang X., Pan Q.	Function and evolution of Magnaporthe oryzae avirulence gene AvrPib responding to the rice blast resistance gene Pib.	Sci Rep	5	11642	2015		
42126	26111541	Campbell M.T., Knecht A.C., Berger B., Brien C.J., Wang D., Walia H.	Integrating Image-Based Phenomics and Association Analysis to Dissect the Genetic Architecture of Temporal Salinity Responses in Rice.	Plant Physiol.	168(4)	1476-89	2015		
42127	26259187	Zhang L., Mao D., Xing F., Bai X., Zhao H., Yao W., Li G., Xie W., Xing Y.	Loss of function of OsMADS3 via the insertion of a novel retrotransposon leads to recessive male sterility in rice (Oryza sativa).	Plant Sci.	238	188-97	2015		
42128	26096631	Zhao J., Chen H., Ren D., Tang H., Qiu R., Feng J., Long Y., Niu B., Chen D., Zhong T., Liu Y.G., Guo J.	Genetic interactions between diverged alleles of Early heading date 1 (Ehd1) and heading date 3a (Hd3a)/ RICE FLOWERING LOCUS T1 (RFT1) control differential heading and contribute to regional adaptation in RICE (Oryza sativa).	New Phytol.			2015		
42129	26102588	Chen X., Zhu L., Xin L., Du K., Ran X., Cui X., Xiang Q., Zhang H., Xu P., Wu X.	Rice stripe1-2 and stripe1-3 Mutants Encoding the Small Subunit of Ribonucleotide Reductase Are Temperature Sensitive and Are Required for Chlorophyll Biosynthesis.	PLoS ONE	10(6)	e0130172	2015		
42130	26083713	Li R., Zhang J., Li J., Zhou G., Wang Q., Bian W., Erb M., Lou Y.	Prioritizing plant defence over growth through WRKY regulation facilitates infestation by non-target herbivores.	Elife	4	e04805	2015		
42131	26105598	Gao X., Zhang X., Lan H., Huang J., Wang J., Zhang H.	The additive effects of GS3 and qGL3 on rice grain length regulation revealed by genetic and transcriptome comparisons.	BMC Plant Biol.	15	156	2015	GL3.1,LK3	OsPPKL1, PPKL1, qGL3, OsPP54, PP54, OsGL3.1, qGL3/OsPPKL1,lk3(t), lk3(t)*, SG3, GS3, SG3-GS3, OsGW3, OsGS3, RGG3/GS3/Mi/OsGGC1, RGG3, Mi, OsGGC1, GGC1, OsSYL3, SYL3, TT2, OsTT2
42132	26086245	Subudhi P.K., De Leon T., Singh P.K., Parco A., Cohn M.A., Sasaki T.	A Chromosome Segment Substitution Library of Weedy Rice for Genetic Dissection of Complex Agronomic and Domestication Traits.	PLoS ONE	10(6)	e0130650	2015		
42133	26076351	Jaiswal V., Gahlaut V., Mathur S., Agarwal P., Khandelwal M.K., Khurana J.P., Tyagi A.K., Balyan H.S., Gupta P.K.	Identification of Novel SNP in Promoter Sequence of TaGW2-6A Associated with grain weight and Other Agronomic Traits in Wheat (Triticum aestivum L.).	PLoS ONE	10(6)	e0129400	2015		
42134	26081948	Kim S.M., Suh J.P., Qin Y., Noh T.H., Reinke R.F., Jena K.K.	Identification and fine-mapping of a new resistance gene, Xa40, conferring resistance to bacterial blight races in rice (Oryza sativa L.).	Theor. Appl. Genet.			2015	XA40	
42135	26125886	Cai J., Zhang M., Guo L.B., Li X.M., Bao J.S., Ma L.Y.	QTLs for rice flag leaf traits in doubled haploid populations in different environments.	Genet. Mol. Res.	14(2)	6786-95	2015		
42136	26071212	Mahjoubi H., Ebel C., Hanin M.	Molecular and functional characterization of the durum wheat TdRL1, a member of the conserved Poaceae RSS1-like family that exhibits features of intrinsically disordered proteins and confers stress tolerance in yeast.	Funct. Integr. Genomics			2015		
42137	26174670	Challam C., Ghosh T., Rai M., Tyagi W.	Allele mining across DREB1A and DREB1B in diverse rice genotypes suggest a highly conserved pathway inducible by low temperature.	J. Genet.	94(2)	231-8	2015		
42138	26035591	Jisha V., Dampanaboina L., Vadassery J., Mith?fer A., Kappara S., Ramanan R.	Overexpression of an AP2/ERF Type Transcription Factor OsEREBP1 Confers Biotic and Abiotic Stress Tolerance in Rice.	PLoS ONE	10(6)	e0127831	2015		
42139	26112675	Hou Y., Qiu J., Tong X., Wei X., Nallamilli B.R., Wu W., Huang S., Zhang J.	A comprehensive quantitative phosphoproteome analysis of rice in response to bacterial blight.	BMC Plant Biol.	15	163	2015		
42140	26165499	Yang J., Zhang X., Huang Y., Feng Y., Li Y.	OsCBL1 Modulates Lateral Root Elongation in Rice via Affecting Endogenous Indole-3-Acetic Acid Biosynthesis.	J Genet Genomics	42(6)	331-4	2015	CBL1	OsCBL1, Os-CBL1
42141	26033328	Huang Z., Lin J., Cheng Z., Xu M., Guo M., Huang X., Yang Z., Zheng J.	Production of oleanane-type sapogenin in transgenic rice via expression of beta-amyrin synthase gene from Panax japonicus C. A. Mey.	BMC Biotechnol.	15	45	2015		
42142	26071275	Han L., Chen J., Mace E.S., Liu Y., Zhu M., Yuyama N., Jordan D.R., Cai H.	Fine mapping of qGW1, a major QTL for grain weight in sorghum.	Theor. Appl. Genet.	128(9)	1813-25	2015		
42143	26082787	Liu S., Hu Q., Luo S., Li Q., Yang X., Wang X., Wang S.	Expression of wild-type PtrIAA14.1, a poplar Aux/IAA gene causes morphological changes in Arabidopsis.	Front Plant Sci	6	388	2015		
42144	26045464	Obertello M., Shrivastava S., Katari M.S., Coruzzi G.M.	Cross-Species Network Analysis Uncovers Conserved Nitrogen-Regulated Network Modules in Rice.	Plant Physiol.	168(4)	1830-43	2015		
42145	26082998	Jardim-Messeder D., Caverzan A., Rauber R., de Souza Ferreira E., Margis-Pinheiro M., Galina A.	Succinate dehydrogenase (mitochondrial complex II) is a source of reactive oxygen species in plants and regulates development and stress responses.	New Phytol.			2015		
42146	26084707	Htwe N.M., Luo Z.Q., Jin L.G., Nadon B., Wang K.J., Qiu L.J.	Functional marker development of miR1511-InDel and allelic diversity within the genus Glycine.	BMC Genomics	16	467	2015		
42147	26054324	Wang C., Duan W., Riquicho A.R., Jing Z., Liu T., Hou X., Li Y.	Genome-wide survey and expression analysis of the PUB family in Chinese cabbage (Brassica rapa ssp. pekinesis).	Mol. Genet. Genomics			2015		
42148	26089199	Xu R.F., Li H., Qin R.Y., Li J., Qiu C.H., Yang Y.C., Ma H., Li L., Wei P.C., Yang J.B.	Generation of inheritable and "transgene clean" targeted genome-modified rice in later generations using the CRISPR/Cas9 system.	Sci Rep	5	11491	2015		
42149	26089830	Xu W., Meng Y., Surana P., Fuerst G., Nettleton D., Wise R.P.	The knottin-like Blufensin family regulates genes involved in nuclear import and the secretory pathway in barley-powdery mildew interactions.	Front Plant Sci	6	409	2015		
42150	26073760	Mostofa M.G., Hossain M.A., Fujita M., Tran L.S.	Physiological and biochemical mechanisms associated with trehalose-induced copper-stress tolerance in rice.	Sci Rep	5	11433	2015		
42151	26063739	Liu M.J., Seddon A.E., Tsai Z.T., Major I.T., Floer M., Howe G.A., Shiu S.H.	Determinants of nucleosome positioning and their influence on plant gene expression.	Genome Res.	25(8)	1182-95	2015		
42152	26069451	Raorane M.L., Pabuayon I.M., Miro B., Kalladan R., Reza-Hajirezai M., Oane R.H., Kumar A., Sreenivasulu N., Henry A., Kohli A.	Variation in primary metabolites in parental and near-isogenic lines of the QTL qDTY 12.1 : altered roots and flag leaves but similar spikelets of rice under drought.	Mol. Breed.	35(6)	138			
42153	26175616	Shinada H., Yamamoto T., Yamamoto E., Hori K., Hirayama Y., Maekawa T., Kiuchi H., Sato H., Sato T.	Quantitative trait loci for whiteness of cooked rice detected in improved rice cultivars in Hokkaido.	Breed. Sci.	65(3)	201-7	2015		
42154	26259185	Sakai H., Iwai T., Matsubara C., Usui Y., Okamura M., Yatou O., Terada Y., Aoki N., Nishida S., Yoshida K.T.	A decrease in phytic acid content substantially affects the distribution of mineral elements within rice seeds.	Plant Sci.	238	170-7	2015		
42155	26136752	Peng X., Qin Z., Zhang G., Guo Y., Huang J.	Integration of the proteome and transcriptome reveals multiple levels of gene regulation in the rice dl2 mutant.	Front Plant Sci	6	351	2015		
42156	26092704	Koc I., Filiz E., Tombuloglu H.	Comparative analysis of plant lycopene cyclases.	Comput Biol Chem	58	81-92	2015		
42157	26098557	Tamaki H., Reguera M., Abdel-Tawab YM., Takebayashi Y., Kasahara H., Blumwald E.	Targeting Hormone-Related Pathways to Improve grain yield in Rice: A Chemical Approach.	PLoS ONE	10(6)	e0131213	2015		
42158	26035336	Li M., Yin X., Sakata K., Yang P., Komatsu S.	Proteomic Analysis of Phosphoproteins in the Rice Nucleus During the Early Stage of Seed Germination.	J. Proteome Res.	14(7)	2884-96	2015		
42159	26174673	Li L., He X., Zhang H., Wang Z., Sun C., Mou T., Li X., Zhang Y., Hu Z.	Genomewide mapping reveals a combination of different genetic effects causing the genetic basis of heterosis in two elite rice hybrids.	J. Genet.	94(2)	261-70	2015		
42160	26133242	Lee H.J., Jo Y.M., Lee J.Y., Lim S.H., Kim Y.M.	Lack of Globulin Synthesis during Seed Development Alters Accumulation of Seed Storage Proteins in Rice.	Int J Mol Sci	16(7)	14717-36	2015		
42161	26095454	Li W., Liu Y., Wang J., He M., Zhou X., Yang C., Yuan C., Wang J., Chern M., Yin J., Chen W., Ma B., Wang Y., Qin P., Li S., Ronald P., Chen X.	The durably resistant rice cultivar Digu activates defence gene expression before the full maturation of Magnaporthe oryzae appressorium.	Mol. Plant Pathol.			2015		
42162	26082402	Lam P.Y., Liu H., Lo C.	Completion of Tricin Biosynthesis Pathway in Rice: Cytochrome P450 75B4 Is a Unique Chrysoeriol 5'-Hydroxylase.	Plant Physiol.	168(4)	1527-36	2015	F3'H,ROMT9,CYP75A11,CYP93G1,CYP75B4	OsF3'H, OsCYP75B3, CYP75B3, OsF3'H10, F3'H10, OsCYP71P3, CYP71P3,COMT, OsCOMT, ROMT-9, OsCOMT1, OsCAldOMT1, CAldOMT1, OsOMT, OsCOMT15, COMT15,OsCYP75A11, OsF3'5'H, F3'5'H, OsF3'5'H1, F3'5'H1,OsCYP93G1, OsFNSII, FNSII, OsCYP71S4, CYP71S4,OsCYP75B4, OsC5'H, C5'H, OsF3'H9, F3'H9, OsCYP71P2, CYP71P2
42163	26058362	Gu R., Chen F., Liu B., Wang X., Liu J., Li P., Pan Q., Pace J., Soomro A.A., L?bberstedt T., Mi G., Yuan L.	Comprehensive phenotypic analysis and quantitative trait locus identification for grain mineral concentration, content, and yield in maize (Zea mays L.).	Theor. Appl. Genet.	128(9)	1777-89	2015		
42164	26061689	Golestan Hashemi FS., Rafii M.Y., Ismail M.R., Mohamed M.T., Rahim H.A., Latif M.A., Aslani F.	Application of an Effective Statistical Technique for an Accurate and Powerful Mining of Quantitative Trait Loci for Rice Aroma Trait.	PLoS ONE	10(6)	e0129069	2015		
42165	26030903	Liu Q., Qin J., Li T., Liu E., Fan D., Edzesi W.M., Liu J., Jiang J., Liu X., Xiao L., Liu L., Hong D.	Fine Mapping and Candidate Gene Analysis of qSTL3, a stigma length-Conditioning Locus in Rice (Oryza sativa L.).	PLoS ONE	10(6)	e0127938	2015		
42166	26081459	Manimaran P., Raghurami Reddy M., Bhaskar Rao T., Mangrauthia S.K., Sundaram R.M., Balachandran S.M.	Identification of cis-elements and evaluation of upstream regulatory region of a rice anther-specific gene, OSIPP3, conferring pollen-specific expression in Oryza sativa (L.) ssp. indica.	Plant Reproduction			2015	OSIPP3	OsPMEI24, PMEI24
42167	26123085	Krishnamurthy P., Kim J.A., Jeong M.J., Kang C.H., Lee S.I.	Defining the RNA-binding glycine-rich (RBG) gene superfamily: new insights into nomenclature, phylogeny, and evolutionary trends obtained by genome-wide comparative analysis of Arabidopsis, Chinese cabbage, rice and maize genomes.	Mol. Genet. Genomics			2015		
42168	26091498	Bernardes N.E., Takeda A.A., Dreyer T.R., Freitas F.Z., Bertolini M.C., Fontes M.R.	Structure of Importin-alpha from a Filamentous Fungus in Complex with a Classical Nuclear Localization Signal.	PLoS ONE	10(6)	e0128687	2015		
42169	26053267	Yuan S., Li Y., Peng S.	Leaf Lateral Asymmetry in Morphological and Physiological Traits of Rice Plant.	PLoS ONE	10(6)	e0129832	2015		
42170	26175622	Yonemaru J., Choi S.H., Sakai H., Ando T., Shomura A., Yano M., Wu J., Fukuoka S.	Genome-wide indel markers shared by diverse Asian rice cultivars compared to Japanese rice cultivar 'Koshihikari'.	Breed. Sci.	65(3)	249-56	2015		
42171	26191068	Bhati K.K., Sharma S., Aggarwal S., Kaur M., Shukla V., Kaur J., Mantri S., Pandey A.K.	Genome-wide identification and expression characterization of ABCC-MRP transporters in hexaploid wheat.	Front Plant Sci	6	488	2015		
42172	26220807	Zheng X.M., Feng L., Wang J., Qiao W., Zhang L., Cheng Y., Yang Q.	Nonfunctional alleles of long-day suppressor genes independently regulate flowering time.	J Integr Plant Biol			2015		
42173	26222686	Shaw R., Kundu S.	Metabolic Plasticity and Inter-Compartmental Interactions in Rice Metabolism: An Analysis from Reaction Deletion Study.	PLoS ONE	10(7)	e0133899	2015		
42174	26176782	Wu J., Zhang Z., Zhang Q., Liu Y., Zhu B., Cao J., Li Z., Han L., Jia J., Zhao G., Sun X.	Generation of Wheat Transcription Factor FOX Rice Lines and Systematic Screening for Salt and Osmotic Stress Tolerance.	PLoS ONE	10(7)	e0132314	2015		
42175	26251886	Kurotani K.I., Hattori T., Takeda S.	Overexpression of a CYP94 family gene CYP94C2b increases internode length and plant height in rice.	Plant Signal Behav	10(7)	e1046667	2015		
42176	26206233	Qin J., Ma X., Yi Z., Tang Z., Meng Y.	A transcriptome-wide study on the microRNA- and the Argonaute 1-enriched small RNA-mediated regulatory networks involved in plant leaf senescence.	Plant Biol (Stuttg)			2015		
42177	26291919	Porcel R., Redondo-G?mez S., Mateos-Naranjo E., Aroca R., Garcia R., Ruiz-Lozano JM.	Arbuscular mycorrhizal symbiosis ameliorates the optimum quantum yield of photosystem II and reduces non-photochemical quenching in rice plants subjected to salt stress.	J. Plant Physiol.	185	75-83	2015		
42178	26263516	Choi M.J., Park Y.R., Park S.J., Kang H.	Stress-responsive expression patterns and functional characterization of cold shock domain proteins in cabbage (Brassica rapa) under abiotic stress conditions.	Plant Physiol. Biochem.	96	132-140	2015		
42179	26175353	Zhang D.P., Zhou Y., Yin J.F., Yan X.J., Lin S., Xu W.F., Balu?ka F., Wang Y.P., Xia Y.J., Liang G.H., Liang J.S.	Rice G-protein subunits qPE9-1 and RGB1 play distinct roles in abscisic acid responses and drought adaptation.	J. Exp. Bot.			2015		
42180	26025535	Zhang L., Gu L., Ringler P., Smith S., Rushton P.J., Shen Q.J.	Three WRKY transcription factors additively repress abscisic acid and gibberellin signaling in aleurone cells.	Plant Sci.	236	214-22	2015		
42181	26138891	Jiang Y., Yang H., Quan S., Liu Y., Shen P., Yang L.	Development of certified matrix-based reference material of genetically modified rice event TT51-1 for real-time PCR quantification.	Anal Bioanal Chem	407(22)	6731-9	2015		
42182	26197316	Pham N.T., Kim J.G., Jung S.	Differential Antioxidant Responses and Perturbed Porphyrin Biosynthesis after Exposure to Oxyfluorfen and Methyl Viologen in Oryza sativa.	Int J Mol Sci	16(7)	16529-44	2015		
42183	26135744	Zhang Y., Liu Y., Zhang J., Guo Y., Ma E.	Molecular Cloning and mRNA Expression of Heat Shock Protein Genes and Their Response to Cadmium Stress in the Grasshopper Oxya chinensis.	PLoS ONE	10(7)	e0131244	2015		
42184	26133688	Whitehouse K.J., Hay F.R., Ellis R.H.	Increases in the longevity of desiccation-phase developing rice seeds: response to high-temperature drying depends on harvest moisture content.	Ann. Bot.	116(2)	247-59	2015		
42185	26183952	Neto L.B., Arenhart R.A., de Oliveira LF., de Lima JC., Bodanese-Zanettini MH., Margis R., Margis-Pinheiro M.	ASR5 is involved in the regulation of miRNA expression in rice.	Plant Cell Rep.			2015		
42186	26161553	Xu Q., Zheng T.Q., Hu X., Cheng L.R., Xu J.L., Shi Y.M., Li Z.K.	Examining Two Sets of Introgression Lines in Rice (Oryza sativa L.) Reveals Favorable Alleles that Improve Grain Zn and Fe Concentrations.	PLoS ONE	10(7)	e0131846	2015		
42187	26147403	Zhang J., Zhou X., Yan W., Zhang Z., Lu L., Han Z., Zhao H., Liu H., Song P., Hu Y., Shen G., He Q., Guo S., Gao G., Wang G., Xing Y.	Combinations of the Ghd7, Ghd8 and Hd1 genes largely define the ecogeographical adaptation and yield potential of cultivated rice.	New Phytol.			2015		
42188	26141567	Atluri S., Rampersad S.N., Bonen L.	Retention of functional genes for S19 ribosomal protein in both the mitochondrion and nucleus for over 60 million years.	Mol. Genet. Genomics			2015		
42189	26202548	Ishimaru T., Ida M., Hirose S., Shimamura S., Masumura T., Nishizawa N.K., Nakazono M., Kondo M.	Laser microdissection-based gene expression analysis in the aleurone layer and starchy endosperm of developing rice caryopses in the early storage phase.	Rice (N Y)	8(1)	57	2015		
42190	26154950	Xu W., Xie L., Ye Z., Gao W., Yao Y., Chen M., Qin J., Ying Y.	Discrimination of Transgenic Rice containing the Cry1Ab protein using Terahertz Spectroscopy and Chemometrics.	Sci Rep	5	11115	2015		
42191	26141566	Urso S., Desiderio F., Biselli C., Bagnaresi P., Crispino L., Piffanelli P., Abbruscato P., Assenza F., Guarnieri G., Cattivelli L., Val? G.	Genetic analysis of durable resistance to Magnaporthe oryzae in the rice accession Gigante Vercelli identified two blast resistance loci.	Mol. Genet. Genomics			2015		
42192	26134138	Tian X.J., Long Y., Wang J., Zhang J.W., Wang Y.Y., Li W.M., Peng Y.F., Yuan Q.H., Pei X.W.	De novo Transcriptome Assembly of Common Wild Rice (Oryza rufipogon Griff.) and Discovery of Drought-Response Genes in Root Tissue Based on Transcriptomic Data.	PLoS ONE	10(7)	e0131455	2015		
42193	26176552	Marcotuli I., Houston K., Waugh R., Fincher G.B., Burton R.A., Blanco A., Gadaleta A.	Genome Wide Association Mapping for Arabinoxylan Content in a Collection of Tetraploid Wheats.	PLoS ONE	10(7)	e0132787	2015		
42194	26310142	Wen C., Xi L., Gao B., Wang K., Lv S., Kou Y., Ma N., Zhao L.	Roles of DgD14 in regulation of shoot branching in chrysanthemum (Dendranthema grandiflorum 'Jinba').	Plant Physiol. Biochem.	96	241-253	2015		
42195	26172549	Woo H.J., Qin Y., Park S.Y., Park S.K., Cho Y.G., Shin K.S., Lim M.H., Cho H.S.	Development of Selectable Marker-Free Transgenic Rice Plants with Enhanced Seed Tocopherol Content through FLP/FRT-Mediated Spontaneous Auto-Excision.	PLoS ONE	10(7)	e0132667	2015		
42196	26136269	Wang Y., Cao L., Zhang Y., Cao C., Liu F., Huang F., Qiu Y., Li R., Lou X.	Map-based cloning and characterization of BPH29, a B3 domain-containing recessive gene conferring brown planthopper resistance in rice.	J. Exp. Bot.			2015	BPH29	Bph29
42197	26197925	Zhang B., Liu X., Xu W., Chang J., Li A., Mao X., Zhang X., Jing R.	Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat.	Sci Rep	5	12211	2015		
42198	26177065	Warren J.G., Kasun G.W., Leonard T., Kirkpatrick B.C.	A Phage Display Selected Peptide Inhibitor of Agrobacterium vitis Polygalacturonase.	Mol. Plant Pathol.			2015		
42199	26129955	Yang C., Ma S., Lee I., Kim J., Liu S.	Saline-induced changes of epicuticular waxy layer on the Puccinellia tenuiflora and Oryza sativa leave surfaces.	Biol. Res.	48	33	2015		
42200	26187409	Duan D., Zhang H.	A single SNP in NRT1.1B has a major impact on nitrogen use efficiency in rice.	Sci China Life Sci	58(8)	827-8	2015		
42201	26143254	Nishizawa-Yokoi A., Nonaka S., Osakabe K., Saika H., Toki S.	A universal positive-negative selection system for gene targeting in plants combining an antibiotic resistance gene and its antisense RNA.	Plant Physiol.			2015		
42202	26142419	Chen Q., Xie Q., Gao J., Wang W., Sun B., Liu B., Zhu H., Peng H., Zhao H., Liu C., Wang J., Zhang J., Zhang G., Zhang Z.	Characterization of Rolled and Erect Leaf 1 in regulating leave morphology in rice.	J. Exp. Bot.			2015	DWARF4,BU1,BZR1,DLT,D61,EXPL1,D11,IBH1,D2,RAVL1,BRD1,REL1	OsDWARF4, osdwarf4, OsDWF4, DWF4, CYP90B2, OsCYP90B2, D4, OsD4,ILI4, OsILI4 , OsBU1, BU1/ILI4, OsbHLH172, bHLH172,OsBZR1, Os BZR1, OsBES1-6, BES1-6,dlt, OsGRAS32, OsDLT, OsDLT1, DTL1, OsGRAS-32, OsGRAS32, GRAS-32, GRAS32, SMOS2/DLT, SMOS2, OsSMOS2, OsGS6, GS6,d61*, dwf42, d61, OsBRI1, OSBRI1, BRI1, Os BRI1, Osbri1, OsBRKq1, BRKq1,OsEXPLA1, EXPLA1, OsRIP3, RIP3, Os-EXPL1, OsEXPL1,d11(d8), dwf10, d8, D11/CYP724B1, d11, CYP724B1, GNS4, OsD11, PMM1, OsPMM1, PMM1/D11, NBG4, OsCPB1, CPB1, CPB1/D11,Os IBH1, OsIBH1, OsbHLH175, bHLH175,d2, dwf2, CYP90D2, D2/CYP90D2, OsD2, SMG11, OsSMG11, D2/SMG11, OsD2a, OsD2b,RAVL, OsRAVL1, OsNGA3, NGA3,brd1, OsDWARF, DWARF, OsBR6ox, BR6ox, CYP85A1, CYP85A4, OsDWF, CYP85A1/OsDWARF, OsBRD1, OsCYP85A1,OsREL1
42203	26258135	Tuhina-Khatun M., Hanafi M.M., Rafii Yusop M., Wong M.Y., Salleh F.M., Ferdous J.	Genetic Variation, Heritability, and Diversity Analysis of Upland Rice (Oryza sativa L.) Genotypes Based on Quantitative Traits.	Biomed Res Int	2015	290861	2015		
42204	26177332	Phukan U.J., Mishra S., Shukla R.K.	Waterlogging and submergence stress: affects and acclimation.	Crit. Rev. Biotechnol.		1-11	2015		
42205	26162429	Kir G., Ye H., Nelissen H., Neelakandan A.K., Kusnandar A.S., Luo A., Inz? D., Sylvester A., Yin Y., Becraft P.W.	RNAi knockdown of BRI1 in maize (Zea mays) reveals novel functions for brassinosteroid signaling in controlling plant architecture.	Plant Physiol.			2015		
42206	26224802	Yuan S., Li Z., Li D., Yuan N., Hu Q., Luo H.	Constitutive expression of Osa-miR528 alters plant development and enhances tolerance to salinity stress and nitrogen starvation in creeping bentgrass (Agrostis stolonifera L.).	Plant Physiol.			2015		
42207	26134858	Li D.A., Walker E., Francki M.G.	Identification of a member of the catalase multigene family on wheat chromosome 7A associated with flour b* colour and biological significance of allelic variation.	Mol. Genet. Genomics			2015		
42208	26198258	Petti C., Hirano K., Stork J., DeBolt S.	Mapping of a cellulose deficient mutant named dwarf1-1 in Sorghum bicolor to the Green Revolution gene GA20-oxidase reveals a regulatory association between gibberellin and cellulose biosynthesis.	Plant Physiol.			2015		
42209	26184504	Peng H., Chen Z., Fang Z., Zhou J., Xia Z., Gao L., Chen L., Li L., Li T., Zhai W., Zhang W.	Rice Xa21 primed genes and pathways that are critical for combating bacterial blight infection.	Sci Rep	5	12165	2015		
42210	26224365	Zhipeng Z., Wang Z., Lv Q., Shi J., Zhong Y., Wu P., Mao C.	SPX proteins regulate Pi homeostasis and signaling in different subcellular level.	Plant Signal Behav		0	2015		
42211	26165969	Dwivedi S.L., Britt A.B., Tripathi L., Sharma S., Upadhyaya H.D., Ortiz R.	Haploids: Constraints and opportunities in plant breeding.	Biotechnol. Adv.	33(6 Pt 1)	812-29	2015		
42212	26187026	Shi G., Zhang Z., Friesen T.L., Bansal U., Cloutier S., Wicker T., Rasmussen J.B., Faris J.D.	Marker development, saturation mapping, and high-resolution mapping of the Septoria nodorum blotch susceptibility gene Snn3-B1 in wheat.	Mol. Genet. Genomics			2015		
42213	26184180	Mou S., Shi L., Lin W., Liu Y., Shen L., Guan D., He S.	Over-Expression of Rice CBS Domain Containing Protein, OsCBSX3, Confers Rice Resistance to Magnaporthe oryzae Inoculation.	Int J Mol Sci	16(7)	15903-17	2015		
42214	26202549	Kwon C.T., Kim S.H., Kim D., Paek N.C.	The Rice Floral Repressor Early flowering1 Affects spikelet fertility By Modulating Gibberellin Signaling.	Rice (N Y)	8(1)	58	2015		
42215	26169392	Shen Y., Zhao Z., Ma H., Bian X., Yu Y., Yu X., Chen H., Liu L., Zhang W., Jiang L., Zhou J., Tao D., Wan J.	Fine mapping of S37, a locus responsible for pollen and embryo sac sterility in hybrids between Oryza sativa L. and O. glaberrima Steud.	Plant Cell Rep.			2015		
42216	26230730	Wang S., Chen W., Xiao W., Yang C., Xin Y., Qiu J., Hu W., Ying W., Fu Y., Tong J., Hu G., Chen Z., Fang X., Yu H., Lai W., Ruan S., Ma H.	Differential Proteomic Analysis Using iTRAQ Reveals Alterations in Hull Development in Rice (Oryza sativa L.).	PLoS ONE	10(7)	e0133696	2015		
42217	26217366	Cao J., Li X., Lv Y., Ding L.	Comparative analysis of the phytocyanin gene family in 10 plant species: a focus on Zea mays.	Front Plant Sci	6	515	2015		
42218	26147209	Gemmecker S., Schaub P., Koschmieder J., Brausemann A., Drepper F., Rodriguez-Franco M., Ghisla S., Warscheid B., Einsle O., Beyer P.	Phytoene Desaturase from Oryza sativa: Oligomeric Assembly, Membrane Association and Preliminary 3D-Analysis.	PLoS ONE	10(7)	e0131717	2015		
42219	26039357	Li S.	The Arabidopsis thaliana TCP transcription factors: A broadening horizon beyond development.	Plant Signal Behav	10(7)	e1044192	2015		
42220	26183036	Su J., Wang W., Han J., Chen S., Wang C., Zeng L., Feng A., Yang J., Zhou B., Zhu X.	Functional divergence of duplicated genes results in a novel blast resistance gene Pi50 at the Pi2/9 locus.	Theor. Appl. Genet.			2015		
42221	26284084	Zhang J., Wu L.S., Fan W., Zhang X.L., Jia H.X., Li Y., Yin Y.F., Hu J.J., Lu M.Z.	Proteomic analysis and candidate allergenic proteins in Populus deltoides CL. "2KEN8" mature pollen.	Front Plant Sci	6	548	2015		
42222	26136263	Wen L., Fukuda M., Sunada M., Ishino S., Ishino Y., Okita T.W., Ogawa M., Ueda T., Kumamaru T.	guanine nucleotide exchange factor 2 for Rab5 proteins coordinated with GLUP6/GEF regulates the intracellular transport of the proglutelin from the Golgi apparatus to the protein storage vacuole in rice endosperm.	J. Exp. Bot.			2015	_,GLUP6,GLUP4,RAB5-GEF2	OsRab5A1, OsRab5b, Rab5b,glup6(t), Glup6(t), Glup6, OsVPS9A, VPS9a, GPA2/VPS9a, GPA2, GLUP6/GEF,glup4(esp8), esp8, glup4, OsRab5B2, Rab5a, OsRab5a, GPA1/Rab5a, GPA, GLUP4/Rab5, GLUP4/Rab5a, GPA1, OsGPA1,Rab5-GEF2, OsRab5-GEF2, Rab5GEF2, OsRab5GEF2, OsVPS9B, VPS9B, OsGEF31, GEF31
42223	26162098	Xu J.L., Wang Y., Zhang F., Wu Y., Zheng T.Q., Wang Y.H., Zhao X.Q., Cui Y.R., Chen K., Zhang Q., Lin H.X., Li J.Y., Li Z.K.	SS1 (NAL1)- and SS2-Mediated Genetic Networks Underlying Source-Sink and Yield Traits in Rice (Oryza sativa L.).	PLoS ONE	10(7)	e0132060	2015		
42224	26138548	Yamori W., Kondo E., Sugiura D., Terashima I., Suzuki Y., Makino A.	Enhanced leaf photosynthesis as a target to increase grain yield: Insights from transgenic rice lines with variable Rieske FeS protein content in the Cytochrome b6 /f complex.	Plant Cell Environ.			2015		
42225	26228872	Zhu C., Xu X., Wang D., Zhu J., Liu G.	An indica rice genotype showed a similar yield enhancement to that of hybrid rice under free air carbon dioxide enrichment.	Sci Rep	5	12719	2015		
42226	26194356	Copetti D., Zhang J., El Baidouri M., Gao D., Wang J., Barghini E., Cossu R.M., Angelova A., Maldonado L CE., Roffler S., Ohyanagi H., Wicker T., Fan C., Zuccolo A., Chen M., Costa de Oliveira A., Han B., Henry R., Hsing Y.I., Kurata N., Wang W., Jackson S.A., Panaud O., Wing R.A.	RiTE database: a resource database for genus-wide rice genomics and evolutionary biology.	BMC Genomics	16	538	2015		
42227	26226878	Grondin A., Mauleon R., Vadez V., Henry A.	Root aquaporins contribute to whole plant water fluxes under drought stress in rice (Oryza sativa L.).	Plant Cell Environ.			2015		
42228	26040787	Wang J., Qi M., Liu J., Zhang Y.	CARMO: a comprehensive annotation platform for functional exploration of rice multi-omics data.	Plant J.	83(2)	359-74	2015		
42229	26218318	Bommert P., Schnittger A.	Where Steroids Meet the Cell Cycle in Architecture.	Dev. Cell	34(2)	131-2	2015		
42230	26208642	Glaubitz U., Erban A., Kopka J., Hincha D.K., Zuther E.	High night temperature strongly impacts TCA cycle, amino acid and polyamine biosynthetic pathways in rice in a sensitivity-dependent manner.	J. Exp. Bot.			2015		
42231	26284087	Forlani G., Bertazzini M., Zarattini M., Funck D., Ruszkowski M., Nocek B.	Functional properties and structural characterization of rice delta(1)-pyrroline-5-carboxylate reductase.	Front Plant Sci	6	565	2015		
42232	26206756	Prince S.J., Beena R., Gomez S.M., Senthivel S., Babu R.C.	Mapping Consistent Rice (Oryza sativa L.) Yield QTLs under Drought Stress in Target Rainfed Environments.	Rice (N Y)	8(1)	53	2015		
42233	26214462	Zai W.S., Miao L.X., Xiong Z.L., Zhang H.L., Ma Y.R., Li Y.L., Chen Y.B., Ye S.G.	Comprehensive identification and expression analysis of Hsp90s gene family in Solanum lycopersicum.	Genet. Mol. Res.	14(3)	7811-20	2015		
42234	26143253	Zhang T., Zhang W., Jiang J.	Genome-Wide Nucleosome Occupancy and Positioning and Their Impact on Gene Expression and Evolution in Plants.	Plant Physiol.	168(4)	1406-16	2015		
42235	26145151	Xing M.Q., Zhang Y.J., Zhou S.R., Hu W.Y., Wu X.T., Ye Y.J., Wu X.X., Xiao Y.P., Li X., Xue H.W.	Global Analysis Reveals the Crucial Roles of DNA Methylation during Rice Seed Development.	Plant Physiol.	168(4)	1417-32	2015		
42236	26025517	Liu K., Liu L.L., Ren Y.L., Wang Z.Q., Zhou K.N., Liu X., Wang D., Zheng M., Cheng Z.J., Lin Q.B., Wang J.L., Wu F.Q., Zhang X., Guo X.P., Wang C.M., Zhai H.Q., Jiang L., Wan J.M.	Dwarf and tiller-enhancing 1 regulates growth and development by influencing boron uptake in boron limited conditions in rice.	Plant Sci.	236	18-28	2015		
42237	26190148	Sun S., Chen D., Li X., Qiao S., Shi C., Li C., Shen H., Wang X.	Brassinosteroid Signaling Regulates Leaf Erectness in Oryza sativa via the Control of a Specific U-Type Cyclin and Cell Proliferation.	Dev. Cell	34(2)	220-8	2015		
42238	26149854	Lin S., Song Q., Tao H., Wang W., Wan W., Huang J., Xu C., Chebii V., Kitony J., Que S., Harrison A., He H.	Rice_Phospho 1.0: a new rice-specific SVM predictor for protein phosphorylation sites.	Sci Rep	5	11940	2015		
42239	26233709	Kumar M.S., Ali K., Dahuja A., Tyagi A.	Role of phytosterols in drought stress tolerance in rice.	Plant Physiol. Biochem.	96	83-89	2015		
42240	26095647	Zhao L., Tan L., Zhu Z., Xiao L., Xie D., Sun C.	PAY1 improves plant architecture and enhances grain yield in rice.	Plant J.	83(3)	528-36	2015	PAY1	
42241	26196146	Secco D., Wang C., Shou H., Schultz M.D., Chiarenza S., Nussaume L., Ecker J.R., Whelan J., Lister R.	Stress induced gene expression drives transient DNA methylation changes at adjacent repetitive elements.	Elife	4		2015		
42242	26133732	Yin C., Li H., Li S., Xu L., Zhao Z., Wang J.	Genetic dissection on rice grain shape by the two-dimensional image analysis in one japonica?~?indica population consisting of recombinant inbred lines.	Theor. Appl. Genet.			2015		
42243	26206757	Takehisa H., Sato Y., Antonio B., Nagamura Y.	Coexpression Network Analysis of Macronutrient Deficiency Response Genes in Rice.	Rice (N Y)	8(1)	59	2015		
42244	26198760	Zhou T., Du L., Wang L., Wang Y., Gao C., Lan Y., Sun F., Fan Y., Wang G., Zhou Y.	Genetic analysis and molecular mapping of QTLs for resistance to rice black-streaked dwarf disease in rice.	Sci Rep	5	10509	2015		
42245	26139575	Xu J., Zhang L., Yang D.L., Li Q., He Z.	Thymidine kinases share a conserved function for nucleotide salvage and play an essential role in Arabidopsis thaliana growth and development.	New Phytol.			2015		
42246	26121931	Mishra R.C., Grover A.	ClpB/Hsp100 proteins and heat stress tolerance in plants.	Crit. Rev. Biotechnol.		1-13	2015		
42247	26152574	Matthus E., Wu L.B., Ueda Y., H?ller S., Becker M., Frei M.	Loci, genes, and mechanisms associated with tolerance to ferrous iron toxicity in rice (Oryza sativa L.).	Theor. Appl. Genet.			2015		
42248	26303982	Chamam A., Wisniewski-Dy? F., Comte G., Bertrand C., Prigent-Combaret C.	Differential responses of Oryza sativa secondary metabolism to biotic interactions with cooperative, commensal and phytopathogenic bacteria.	Planta			2015		
42249	26243616	Bai J., Zhu X., Wang Q., Zhang J., Chen H., Dong G., Zhu L., Zheng H., Xie Q., Nian J., Chen F., Fu Y., Qian Q., Zuo J.	Rice TUTOU1 Encodes a SCAR-like Protein that Is Important for Actin Organization and Panicle Development.	Plant Physiol.			2015	_,_,_,ES1	OsSCAR4, SCAR4,OsSCAR2, SCAR2, OsSCAR3, SCAR3,OsSCAR3, SCAR3, OsSCAR2, SCAR2,TUT1, OsSCAR1, SCAR1, TUT1/OsSCAR1, OsSCAR2, SCAR2
42250	26252898	Jamsheer K M., Mannully C.T., Gopan N., Laxmi A.	Comprehensive Evolutionary and Expression Analysis of FCS-Like Zinc finger Gene Family Yields Insights into Their Origin, Expansion and Divergence.	PLoS ONE	10(8)	e0134328	2015		
42251	26257333	Harrison P.J., Newgas S.A., Descombes F., Shepherd S.A., Thompson A.J., Bugg T.D.	Biochemical characterization and selective inhibition of beta-carotene cis-trans isomerase D27 and carotenoid cleavage dioxygenase CCD8 on the strigolactone biosynthetic pathway.	FEBS J.			2015		
42252	26248667	Kakkar A., Nizampatnam N.R., Kondreddy A., Pradhan B.B., Chatterjee S.	Xanthomonas campestris cell-cell signalling molecule DSF (diffusible signal factor) elicits innate immunity in plants and is suppressed by the exopolysaccharide xanthan.	J. Exp. Bot.			2015		
42253	26318216	Dong L., Wang Q., Manik S.M., Song Y., Shi S., Su Y., Liu G., Liu H.	Nicotiana sylvestris calcineurin B-like protein NsylCBL10 enhances salt tolerance in transgenic Arabidopsis.	Plant Cell Rep.			2015		
42254	26243630	Bonnot C., Pinson B., Cl?ment M., Bernillon S., Chiarenza S., Kanno S., Kobayashi N., Delannoy E., Nakanishi T.M., Nussaume L., Desnos T.	A chemical genetic strategy identify the PHOSTIN, a synthetic molecule that triggers phosphate starvation responses in Arabidopsis thaliana.	New Phytol.			2015		
42255	26304198	Maqbool A., Saitoh H., Franceschetti M., Stevenson C., Uemura A., Kanzaki H., Kamoun S., Terauchi R., Banfield M.J.	Structural basis of pathogen recognition by an integrated HMA domain in a plant NLR immune receptor.	Elife	4		2015	PIKP	Pik-p, Pi-kp, Pikp, Pikp-1, Pikp-2
42256	26241330	Kerk D., Silver D., Uhrig R.G., Moorhead G.B.	"PP2C7s", Genes Most Highly Elaborated in Photosynthetic Organisms, Reveal the Bacterial Origin and Stepwise Evolution of PPM/PP2C Protein Phosphatases.	PLoS ONE	10(8)	e0132863	2015		
42257	26282053	Liu J., Deng M., Guo H., Raihan S., Luo J., Xu Y., Dong X., Yan J.	Maize orthologs of rice GS5 and their trans-regulator are associated with kernel development.	J Integr Plant Biol			2015		
42258	26309725	Hartmann M., Gas-Pascual E., Hemmerlin A., Rohmer M., Bach T.J.	Development of an image-based screening system for inhibitors of the plastidial MEP pathway and of protein geranylgeranylation.	F1000Res	4	14	2015		
42259	26297139	Ishikawa T., Aki T., Yanagisawa S., Uchimiya H., Kawai-Yamada M.	Overexpression of Bax inhibitor-1 links plasma membrane microdomain proteins to stress.	Plant Physiol.			2015		
42260	26319557	Wang W., Huang F., Qin Q., Zhao X., Li Z., Fu B.	Comparative analysis of DNA methylation changes in two rice genotypes under salt stress and subsequent recovery.	Biochem. Biophys. Res. Commun.			2015		
42261	26321658	Pradhan S.K., Barik S.R., Sahoo J., Pandit E., Nayak D.K., Pani D.R., Anandan A.	Comparison of Sub1 markers and their combinations for submergence tolerance and analysis of adaptation strategies of rice in rainfed lowland ecology.	C. R. Biol.			2015		
42262	26242818	Shew A.M., Nalley L.L., Danforth D.M., Dixon B.L., Nayga R.M., Delwaide A.C., Valent B.	Are all GMOs the same? Consumer acceptance of cisgenic rice in India.	Plant Biotechnol. J.			2015		
42263	26284908	Wang X., Jia M.H., Ghai P., Lee F.N., Jia Y.	Genome wide Association of Rice Blast disease resistance and Yield Related Components of Rice.	Mol. Plant Microbe Interact.			2015		
42264	26318142	Takayama S., Hashimoto K., Kokubu E., Taniguchi M., Tajima K., Ochiai A., Saitoh E., Saito A., Ishihara K., Kato T.	Inhibitory effects of a novel cationic dodecapeptide [CL(14-25)] derived from cyanate lyase of rice on endotoxic activities of LPSs from Escherichia coli and periodontopathic Aggregatibacter actinomycetemcomitans.	Microb. Pathog.			2015		
42265	26243619	Rao Y., Yang Y., Xu J., Li X., Leng Y., Dai L., Huang L., Shao G., Ren D., Hu J., Guo L., Pan J., Zeng D.	EARLY SENESCENCE 1 Encodes a SCAR-like Protein2 that Affects Water Loss in Rice.	Plant Physiol.			2015	SDD1,CKX4,_,ES1,ERF42,ERF117	OsSDD1, OsSub26, SUB26,OsCKX4, ckx4, OsSCRM, OsSCRM2, SCRM, SCRM2,OsTMM, TMM,TUT1, OsSCAR1, SCAR1, TUT1/OsSCAR1, OsSCAR2, SCAR2,OsERF#042, OsERF042, OsERF42, AP2/EREBP#048, AP2/EREBP48, OsDREB2B, DREB2B, OsDREB2B2, OsDREB2A, DREB2A,OsERF#117, OsERF117, AP2/EREBP#150, AP2/EREBP150, OsABI4, ABI4
42266	26277261	Numa H., Yamaguchi K., Shigenobu S., Habu Y.	Gene Body CG and CHG Methylation and Suppression of Centromeric CHH Methylation are Mediated by DECREASE IN DNA METHYLATION1 in Rice.	Mol Plant			2015		
42267	26243626	Dixit S., Grondin A., Lee C.R., Henry A., Olds T.M., Kumar A.	Understanding rice adaptation to varying agro-ecosystems: trait interactions and quantitative trait loci.	BMC Genet.	16	86	2015		
42268	26276867	Wang S.H., Lim J.H., Kim S.S., Cho S.H., Yoo S.C., Koh H.J., Sakuraba Y., Paek N.C.	Mutation of SPOTTED LEAF3 (spl3) impairs abscisic acid-responsive signalling and delays leaf senescence in rice.	J. Exp. Bot.			2015		
42269	26293787	Vemireddy L.R., Noor S., Satyavathi V.V., Srividhya A., Kaliappan A., Parimala S., Bharathi P.M., Deborah D.A., Rao K.V., Shobharani N., Siddiq E.A., Nagaraju J.	Discovery and mapping of genomic regions governing economically important traits of Basmati rice.	BMC Plant Biol.	15	207	2015		
42270	26043067	Chen J., Gao H., Zheng X.M., Jin M., Weng J.F., Ma J., Ren Y., Zhou K., Wang Q., Wang J., Wang J.L., Zhang X., Cheng Z., Wu C., Wang H., Wan J.M.	An evolutionarily conserved gene, FUWA, plays a role in determining panicle architecture, grain shape and grain weight in rice.	Plant J.	83(3)	427-38	2015	FUWA	OsFUWA
42271	26317412	Jang S., Choi S.C., Li H.Y., An G., Schmelzer E.	Functional Characterization of Phalaenopsis aphrodite Flowering Genes PaFT1 and PaFD.	PLoS ONE	10(8)	e0134987	2015		
42272	26319531	Ganie S.A., Dey N., Mondal T.K.	Promoter methylation regulates the abundance of osa-miR393a in contrasting rice genotypes under salinity stress.	Funct. Integr. Genomics			2015		
42273	26302743	Huang W., Xian Z., Kang X., Tang N., Li Z.	Genome-wide identification, phylogeny and expression analysis of GRAS gene family in tomato.	BMC Plant Biol.	15	209	2015		
42274	26319516	Miyazaki S., Sato Y., Asano T., Nagamura Y., Nonomura K.I.	Rice MEL2, the RNA recognition motif (RRM) protein, binds in vitro to meiosis-expressed genes containing U-rich RNA consensus sequences in the 3'-UTR.	Plant Mol. Biol.			2015	MEL2	OsMEL2,  OsRING430, RING430
42275	26296797	Ning Y., Shi X., Wang R., Fan J., Park C.H., Zhang C., Zhang T., Ouyang X., Li S., Wang G.L.	OsELF3-2, an ortholog of Arabidopsis ELF3, interacts with the E3 ligase APIP6 and negatively regulates immunity against Magnaporthe oryzae in rice.	Mol Plant			2015		
42276	26238949	Liu C., Song G., Zhou Y., Qu X., Guo Z., Liu Z., Jiang D., Yang D.	OsPRR37 and Ghd7 are the major genes for general combining ability of DTH, PH and SPP in rice.	Sci Rep	5	12803	2015		
42277	26320209	Matsushima R., Maekawa M., Sakamoto W.	Geometrical formation of compound starch grains in rice implements Voronoi diagram.	Plant Cell Physiol.			2015		
42278	26261267	Fang Y., Liao K., Du H., Xu Y., Song H., Li X., Xiong L.	A stress-responsive NAC transcription factor SNAC3 confers heat and drought tolerance through modulation of reactive oxygen species in rice.	J. Exp. Bot.			2015	APX8,_,PRXIIE2,CATA,APX3,RBOHF	OsAPx8, OsAPx08, OSAPX8, APx8, OsAPX8,ONAC003, ONAC3, ONAC016, ONAC16, SNAC3, OsSND3, SND3, OsNAC006, NAC006, ONAC066,Pre IIE2, OsPrxII E2, PrxII E2, OsPrxIIE2, PrxIIE2,CATA1, Cat A1*, OSCAT-A, Cat2, CatA1, CAT-A, OsCatA, OsCAT, CAT, catA, OSCATA, OsCATc, OsCATA, OsCAT1A, CAT1, OsCAT1, OsCATC, OsCAT2,OsAPx3, OsAPx03, OSAPX3, APx3, mAPX,RbohF, rbohF, OsrbohF, Os rbohF, OsNox6, Nox6, OsrbohE, rbohE, OsRboh6, Rboh6
42279	26258482	He Q., Yu J., Kim T.S., Cho Y.H., Lee Y.S., Park Y.J.	Resequencing Reveals Different Domestication Rate for BADH1 and BADH2 in Rice (Oryza sativa).	PLoS ONE	10(8)	e0134801	2015		
42280	26254327	Wu D., Shen H., Yokawa K., Balu?ka F.	Overexpressing OsPIN2 enhances aluminium internalization by elevating vesicular trafficking in rice root apex.	J. Exp. Bot.			2015		
42281	26296302	Nada R.M., Abogadallah G.M.	Restricting the above ground sink corrects the root/shoot ratio and substantially boosts the yield potential per panicle in field-grown rice (Oryza sativa).	Physiol Plant			2015		
42282	26278778	Mehra P., Pandey B.K., Giri J.	Genome-wide DNA polymorphisms in low Phosphate tolerant and sensitive rice genotypes.	Sci Rep	5	13090	2015		
42283	26313446	Grenier C., Cao T.V., Ospina Y., Quintero C., Ch?tel MH., Tohme J., Courtois B., Ahmadi N.	Accuracy of Genomic Selection in a Rice Synthetic Population Developed for Recurrent Selection Breeding.	PLoS ONE	10(8)	e0136594	2015		
42284	26258667	Yu C., Liu Y., Zhang A., Su S., Yan A., Huang L., Ali I., Liu Y., Forde B.G., Gan Y.	MADS-box Transcription Factor OsMADS25 Regulates Root Development through Affection of Nitrate Accumulation in Rice.	PLoS ONE	10(8)	e0135196	2015		
42285	26313002	Garneau A.P., Carpentier G.A., Marcoux A.A., Frenette-Cotton R., Simard C.F., R?mus-Borel W., Caron L., Jacob-Wagner M., No?l M., Powell J.J., B?langer R., C?t? F., Isenring P.	Aquaporins Mediate Silicon Transport in Humans.	PLoS ONE	10(8)	e0136149	2015		
42286	26280413	Shen H., Zhong X., Zhao F., Wang Y., Yan B., Li Q., Chen G., Mao B., Wang J., Li Y., Xiao G., He Y., Xiao H., Li J., He Z.	Overexpression of receptor-like kinase ERECTA improves thermotolerance in rice and tomato.	Nat. Biotechnol.			2015	SIK1,RLCK204	OsSIK1, OsER2, ER2, OsERL, ERL,OsRLCK204, OsER1, ER1
42287	26285801	Chen X., Liu X., Zhao Y., Zhou D.X.	Histone H3K4me3 and H3K27me3 regulatory genes control stable transmission of an epimutation in rice.	Sci Rep	5	13251	2015	CLF,RFS,_	OsSET24, SDG711, EZ1, OsCLF, OsSDG711,rfs, cul7, OsRFS, OsCHR729, CHR729, CHR4, OsCHR4, CRL6, OsCRL, OsCHR4/CHR729, PKR1, OsPHD32, PHD32,JMJ703
42288	26322055	Hasan M.K., Ahammed G.J., Yin L., Shi K., Xia X., Zhou Y., Yu J., Zhou J.	Melatonin mitigates cadmium phytotoxicity through modulation of phytochelatins biosynthesis, vacuolar sequestration, and antioxidant potential in Solanum lycopersicum L.	Front Plant Sci	6	601	2015		
42289	26263547	Srivastava R., Rai K.M., Pandey B., Singh S.P., Sawant S.V.	Spt-Ada-Gcn5-Acetyltransferase (SAGA) Complex in Plants: Genome Wide Identification, Evolutionary Conservation and Functional Determination.	PLoS ONE	10(8)	e0134709	2015		
42290	26287170	Yoneyama T., Ishikawa S., Fujimaki S.	Route and Regulation of Zinc, Cadmium, and Iron Transport in Rice Plants (Oryza sativa L.) during Vegetative Growth and Grain Filling: Metal Transporters, Metal Speciation, Grain Cd Reduction and Zn and Fe Biofortification.	Int J Mol Sci	16(8)	19111-29	2015		
42291	26270815	Inagaki N., Kinoshita K., Kagawa T., Tanaka A., Ueno O., Shimada H., Takano M.	Phytochrome B Mediates the Regulation of Chlorophyll Biosynthesis through Transcriptional Regulation of ChlH and GUN4 in Rice Seedlings.	PLoS ONE	10(8)	e0135408	2015	DVR,CHLH,HEMA,FC2,SPL42,YL1,SPRL1,YGL18 ,CAO2,RLIN1,YGL1,GUN4,LM3,FGL,PORA,LYL1,YGL98,ELL,FC1,_,YGL10,_,PHYB,YS53	OsDVR,OsChlH, ChlH, OsCHLH,HEMA1, OsHEMA, GluTR, OsHEMA1, hemA,OsFC2, OsGUN6-2, GUN6-2 ,PBD, PBGD, HEMC, OsSPL42, OsPBGD, OsPBD,MTC, OsMTC, YGL8, OsYGL8, OsCRD1, CRD1, OsCRD, CRD, YL-1, PNZIP, OsPNZIP,OsPPX, PPX, PPO1, OsPPO1, OsSPRL1, LMM8, OsLMM8,ChlM, CHLM, MgMT, OsYGL18,OsChlM, OsCHLM, OsMgMT,OsCAO2, OsCAO, CAO,CPO, CPOX, LLM1, HEMF, OsRLIN1, OsCPO, OsCPOX, OsLLM1, OsHEMF,OsYGL1, CHLG, Ygl1, CS, OsCHLG,OsGUN4,UroD, URO-D, OsLM3, OsUroD, OsURO-D,fgl(fl), fl, fgl, OsFGL, OsPorB, PoPA, PORA, porA, OsPORA, PORB, OsPORB,OsPorA, OsPORA,OsChl P, CHL P, ChlP, OsGGRI, GGRI, OsGGR, GGR, OsGGR1, GGR1, OsGGR1/LYL1/OsChl P,OsChlD, ChlD, CHLD, OsCHLD, Ygl7, YGL3, OsvWA12, vWA12,chlI, OsChlI, ChlI, CHLI, OsCHLI, OsCHLI/ELL, OsELL,OsFC1, OsGUN6-1, GUN6-1,ALAD, HEMB, OsALAD, OsHEMB, hemB,CAO, OsCAO, CAO1, OsCAO1, Oslls1, Lls1, DVR, PGL,UroS,phyB, PHYB1, OsPHYB, OsphyB, OsYHB, YHB, OsPHYB/OsYHB,GSA, GSAT, HEML, OsGSA, OsGSAT, OsHEML, OsGSAM, GSAM, OsYS53
42292	26272901	Wang X.L., Song S.H., Wu Y.S., Li Y.L., Chen T.T., Huang Z.Y., Liu S., Dunwell T.L., Pfeifer G.P., Dunwell J.M., Wamaedeesa R., Ullah I., Wang Y., Hu S.N.	Genome-wide mapping of 5-hydroxymethylcytosine in three rice cultivars reveals its preferential localization in transcriptionally silent transposable element genes.	J. Exp. Bot.			2015		
42293	26302213	Zheng S., Zhao S., Li Z., Wang Q., Yao F., Yang L., Pan J., Liu W.	Evaluating the Effect of Expressing a Peanut Resveratrol Synthase Gene in Rice.	PLoS ONE	10(8)	e0136013	2015		
42294	26313122	Rahman M.Z., Fujishige M., Maeda M., Kimura Y.	Rice alpha-fucosidase active against plant complex type N-glycans containing Lewis a epitope: purification and characterization.	Biosci. Biotechnol. Biochem.		1-4	2015		
42295	26283788	Galiullina R.A., Kasperkiewicz P., Chichkova N.V., Szalek A., Serebryakova M.V., Poreba M., Drag M., Vartapetian A.B.	Substrate Specificity and Possible Heterologous Targets of Phytaspase, a Plant Cell Death Protease.	J. Biol. Chem.			2015		
42296	26322072	Fiorilli V., Vallino M., Biselli C., Faccio A., Bagnaresi P., Bonfante P.	Host and non-host roots in rice: cellular and molecular approaches reveal differential responses to arbuscular mycorrhizal fungi.	Front Plant Sci	6	636	2015		
42297	26300893	Forlani G., Bertazzini M., Zarattini M., Funck D.	Functional characterization and expression analysis of rice delta(1)-pyrroline-5-carboxylate dehydrogenase provide new insight into the regulation of proline and arginine catabolism.	Front Plant Sci	6	591	2015		
42298	26305329	Cho W.K., Lian S., Kim S.M., Seo B.Y., Jung J.K., Kim K.H.	Time-Course RNA-Seq Analysis Reveals Transcriptional Changes in Rice Plants Triggered by Rice stripe virus Infection.	PLoS ONE	10(8)	e0136736	2015		
42299	26277389	Yamamoto K., Shida S., Honda Y., Shono M., Miyake H., Oguri S., Sakamoto H., Momonoki Y.S.	Overexpression of acetylcholinesterase gene in rice results in enhancement of shoot gravitropism.	Biochem. Biophys. Res. Commun.			2015		
42300	26305923	Gao J.L., Wu M., Liu W., Feng Z.J., Zhang Y.Z., Jiang F.L., Liu Y., Dai J.	Dysfunction of Rice Mitochondrial Membrane Induced by Yb(3.)	J. Membr. Biol.			2015		
42301	26237574	Singh R.K., Pandey S.P.	Evolution of structural and functional diversification among plant Argonautes.	Plant Signal Behav		0	2015		
42302	26264916	Wennman A., Jerner?n F., Magnuson A., Oliw E.H.	Expression and characterization of manganese lipoxygenase of the rice blast fungus reveals prominent sequential lipoxygenation of alpha-linolenic acid.	Arch. Biochem. Biophys.	583	87-95	2015		
42303	26083154	Baldrich P., Campo S., Wu M.T., Liu T.T., Hsing Y.I., Segundo B.S.	MicroRNA-mediated regulation of gene expression in the response of rice plants to fungal elicitors.	RNA Biol	12(8)	847-63	2015		
42304	26248689	Zhang X., Yang S., Wang J., Jia Y., Huang J., Tan S., Zhong Y., Wang L., Gu L., Chen J.Q., Pan Q., Bergelson J., Tian D.	A genome-wide survey reveals abundant rice blast R-genes in resistant cultivars.	Plant J.			2015		
42305	26331804	Byeon Y., Tan D.X., Reiter R.J., Back K.	Predominance of 2-hydroxymelatonin over melatonin in plants.	J. Pineal Res.			2015		
42306	26272249	Lin Q., Wu F., Sheng P., Zhang Z., Zhang X., Guo X., Wang J., Cheng Z., Wang J., Wang H., Wan J.	The SnRK2-APC/C(TE) regulatory module mediates the antagonistic action of gibberellic acid and abscisic acid pathways.	Nat Commun	6	7981	2015		
42307	26275148	Li J., Zhao Y., Chu H., Wang L., Fu Y., Liu P., Upadhyaya N., Chen C., Mou T., Feng Y., Kumar P., Xu J.	SHOEBOX Modulates root meristem Size in Rice through Dose-Dependent Effects of Gibberellins on Cell Elongation and Proliferation.	PLoS Genet.	11(8)	e1005464	2015	NGR5,KS1	ERF142, OsERF#142, OsERF142, AP2/EREBP#049, AP2/EREBP49, SMOS1, OsSMOS1, SHB, OsAP2-EREBP-049, RLA1, RLA1/SMOS1, OsERF142/SMOS1, OsNGR5, GR5, OsGR5,OsKS1, KS1, KS1A, KSL1, OsKSL1, OsKS1A, OsKS1B, OsKS1C, Ks1, Os KS1, OsTPS26, TPS6, OsTPS6
42308	24268791	Cao Y., Yan Y., Zhang F., Hua-Dun Wang, Gu M., Xue-Neng Wu, Shu-Bin Sun, Guo-Hua Xu	Fine characterization of OsPHO2 knockout mutants reveals its key role in Pi utilization in rice.	J. Plant Physiol.			2013	PHF1,PHR2,LTN1	OsPHF1, OsWD40-137, OsSEC12,OsPHR2, Os-PHR2,LTN1, OsPHO2, PHO2.1, PHO2.2, PHO2, OsUBC35, UBC35
42309	19841664	Sawa S., Kinoshita A., Betsuyaku S., Fukuda H.	A large family of genes that share homology with CLE domain in Arabidopsis and rice.	Plant Signal Behav	3(5)	337-9	2008	CLE402,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,FON2	FCP1,OsFCP1,  FCP1/Os CLE402, Os CLE402, OsCLE402,Os_CLE71, OsCLE71, CLE71,Os_CLE50, OsCLE50, CLE50,OsCLE801, CLE801,OsCLE401, CLE401,Os_CLE42, OsCLE42, CLE42,Os_CLE51, OsCLE51, CLE51,Os_CLE45, OsCLE45, CLE45,Os_CLE43, OsCLE43, CLE43,Os_CLE49, OsCLE49, CLE49,Os_CLE44, OsCLE44, CLE44,OsCLE509, CLE509,Os_CLE15, OsCLE15, CLE15,Os_CLE24, OsCLE24, CLE24,Os_CLE47, OsCLE47, CLE47,OsCLE601, CLE601,OsCLE602, CLE602,OsCLE305, CLE305,OsCLE304, CLE304,OsCLE201, CLE201,OsCLE203, CLE203,OsCLE102, CLE102,OsCLE507, CLE507,Os_CLE46, OsCLE46, CLE46,FOS1, OsCLE202, CLE202,OsCLE302, CLE302,OsCLE103, CLE103,OsCLE508, CLE508,OsCLE104, CLE104,OsCLE301, CLE301,OsCLE206, CLE206,OsCLE506, CLE506,OsCLE504, CLE504,OsCLE603, CLE603,OsCLE404, CLE404,OsCLE204, CLE204,OsCLE403, CLE403,OsCLE503, CLE503,OsCLE303, CLE303,OsCLE101, CLE101,OsCLE501, CLE501,Os_CLE48, OsCLE48, CLE48,OsCLE502, CLE502,OsCLE505, CLE505,OsCLE205, CLE205,OsCLE306, CLE306,fon2, OsFON2, FON4, OsFON4, FON2/FON4, TG1
42310	23534212	Wang F., Shang Y., Yang L., Zhu C.	Comparative proteomic study and functional analysis of translationally controlled tumor protein in rice roots under Hg2+ stress.	J Environ Sci (China)	24(12)	2149-58	2012	_	OsTCTP, TCTP, OsTCTPa, OsTCTPb, TPH
42311	25120549	Diego F Guti?rrez-Galeano, Roberto Toscano-Morales, Berenice Calder?n-P?rez, Beatriz Xoconostle-C?zares, Roberto Ruiz-Medrano	Structural divergence of plant TCTPs.	Front Plant Sci	5	361	2014	_	OsTCTP, TCTP, OsTCTPa, OsTCTPb, TPH
42312	25103875	Liu X., Huang D., Tao J., Anthony J Miller, Fan X., Xu G.	Identification and functional assay of the interaction motifs in the partner protein OsNAR2.1 of the two-component system for high-affinity nitrate transport.	New Phytol.	204(1)	74-80	2014	HTNE,NAR2.1	NRT2.3, OsNRT2.3, OsNRT2;1, OsNRT2.3a, OsNRT2.3b, OsNRT2;3a, OsNRT2.5 ,OsNAR2.1, OsNRT3.1A
42313	19752888	Ding W., Yu Z., Tong Y., Huang W., Chen H., WU P.	A transcription factor with a bHLH domain regulates root hair development in rice.	Cell Res.	19(11)	1309-11	2009	RHL1	OsbHLH115, bHLH115, OsRHL1
42314	23550829	Ming-Yan Cheung, Man-Wah Li, Yuk-Lin Yung, Chao-Qing Wen, Hon-Ming Lam	The unconventional P-loop NTPase OsYchF1 and its regulator OsGAP1 play opposite roles in salinity stress tolerance.	Plant Cell Environ.	36(11)	2008-20	2013	C2DP16,YCHF1	OsGAP1, GAP1, OsC2DP16,OsYchF1, YchF1, OsPM8ATP 
42315	21737415	Lata C., Prasad M.	Role of DREBs in regulation of abiotic stress responses in plants.	J. Exp. Bot.	62(14)	4731-48	2011	ERF44,DREB1C,ERF41,DREB1D,DREB1F,DREB1A,DREB1B,DREB2A,ERF42	OsERF#044, OsERF044, OsERF44, AP2/EREBP#112, AP2/EREBP112, OsDREB2C, DREB2C, OsEnS-124,OsDREB1C, CBF1, ERF26, OsERF026, OsERF#026, OsERF26, AP2/EREBP#098, AP2/EREBP98, OsCBF2, CBF2,OsERF#041, OsERF041, OsERF41, AP2/EREBP#025, AP2/EREBP25, OsDREB2E,OsDREB1D, CBF4, ERF116, OsERF#116, OsERF116, AP2/EREBP#054, AP2/EREBP54, OsCbf1, OsCBF1,OsERF#027, OsERF027, OsERF27, ERF27, AP2/EREBP#081, AP2/EREBP81, OsDREB1F,OsDREB1A, Os DREB1A, CBF3, OsCBF3, OsDREB1A/OsCBF3, ERF24, OsERF24, OsERF024, OsERF#024, AP2/EREBP#114, AP2/EREBP114, OsDREBL,OsDREB1B, ERF31, OsERF031, OsERF#031, OsERF31, AP2/EREBP#169, AP2/EREBP169, OsDREB1b, OsDREB1C, OsCBF1, CBF1,OsDREB2A, OsDREB2a, ERF40, OsERF#040, OsERF040, OsERF40, AP2/EREBP#167, AP2/EREBP167,OsERF#042, OsERF042, OsERF42, AP2/EREBP#048, AP2/EREBP48, OsDREB2B, DREB2B, OsDREB2B2, OsDREB2A, DREB2A
42316	12844217	Jian-Quan Chen, Dong Y., Yu-Jun Wang, Liu Q., Jin-Song Zhang, Shou-Yi Chen	An AP2/EREBP-type transcription-factor gene from rice is cold-inducible and encodes a nuclear-localized protein.	Theor. Appl. Genet.	107(6)	972-9	2003	DREB1A	OsDREB1A, Os DREB1A, CBF3, OsCBF3, OsDREB1A/OsCBF3, ERF24, OsERF24, OsERF024, OsERF#024, AP2/EREBP#114, AP2/EREBP114, OsDREBL
42317	21151904	Plett D., Toubia J., Garnett T., Tester M., Brent N Kaiser, Baumann U.	Dichotomy in the NRT gene families of dicots and grass species.	PLoS ONE	5(12)	e15289	2010	NPF6.5,NRT1.4,NAR2.2,NRT2.2,NRT1.2,NRT1.3B,NAR2.1,NRT2.1,_,NRT1.7,_,NPF6.3,NRT1.5B,NRT1.1C,NRT1.5A,HTNE	OsNRT1.1B, NRT1.1B, OsNPF6.5,OsNRT1.4,OsNAR2.2, OsNRT3.1B,OsNRT2.2, OsNRT2.1,OsNRT1.2,OsNRT1.3B,OsNAR2.1, OsNRT3.1A,OsNRT2.1, OsNRT2.2,OsNRT3.2,OsNRT1.7,OsNRT1.3A,OsNRT1.1A, NRT1.1A, OsNRT1.1A/ OsNPF6.3, OsNPF6.3,OsNRT1.5B,OsNRT1.1C, OsNPF6.4, NPF6.4,OsNRT1.5A,NRT2.3, OsNRT2.3, OsNRT2;1, OsNRT2.3a, OsNRT2.3b, OsNRT2;3a, OsNRT2.5 
42318	18424615	Zhang C., Eileen L Mallery, Schlueter J., Huang S., Fan Y., Brankle S., Christopher J Staiger, Daniel B Szymanski	Arabidopsis SCARs function interchangeably to meet actin-related protein 2/3 activation thresholds during morphogenesis.	Plant Cell	20(4)	995-1011	2008	_,_,ES1,_	OsSCAR2, SCAR2, OsSCAR3, SCAR3,OsSCAR4, SCAR4,TUT1, OsSCAR1, SCAR1, TUT1/OsSCAR1, OsSCAR2, SCAR2,OsSCAR3, SCAR3, OsSCAR2, SCAR2
42319	25400654	Liu X., Zhou C., Zhao Y., Zhou S., Wang W., Dao-Xiu Zhou	The rice enhancer of zeste [E(z)] genes SDG711 and SDG718 are respectively involved in long day and short day signaling to mediate the accurate photoperiod control of flowering time.	Front Plant Sci	5	591	2014	IEZ1,EF1,CLF,SE1,_	OsiEZ1, OsSET1, SET1, iEZ1, OsEZ1/OsiEZ1, OsEZ1, EZ1, ez1, OsSET15, SDG718, DLN84, OsDLN84,Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,OsSET24, SDG711, EZ1, OsCLF, OsSDG711,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, OsHd1,  Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,OsLF, LF, OsbHLH119
42320	21362738	Ding Y., Chen Z., Zhu C.	Microarray-based analysis of cadmium-responsive microRNAs in rice (Oryza sativa).	J. Exp. Bot.	62(10)	3563-73	2011	MIR166M,MIR171,MIR156L,MIR166E,MIR390,MIR166I,MIR168A,MIR162A,MIR156K,MIR166G,MIR156A,MIR1432,MIR528,MIR166K,MIR168B,MIR171G,MIR444B,MIR396D,MIR171B	miR166m, osa-miR166m,miR171, osa-miR171, miR171a, osa-miR171a, osa-MIR171a,miR156l, OsmiR156l, osmiR156l, osa-miR156l, osa-MIR156l, osa-miR156l-3p, osa-miR156l-5p,miR166e, osa-miR166eosa-miR166e-3p osa-miR166e-5p,OsmiR390, miR390, osa-MIR390osa-miR390, osa-miR390-3p, osa-miR390-5p,miR166i, osa-miR166iosa-miR166i-3p,miR168a, osa-miR168a, osa-MIR168a osa-miR168a-3p osa-miR168a-5p, OsMIR168a,miR162a, osa-miR162a, osa-MIR162a, OsMIR162a,miR156k, OsmiR156k, osmiR156k, osa-miR156k, osa-MIR156k,miR166g, osa-miR166gosa-miR166g-3p osa-miR166g-5p,miR156a, OsmiR156a, osmiR156a, osa-miR156a, osa-MIR156a,miR1432, osa-miR1432, osa-miR1432-5p, osa-MIR1432,miR528, Osa-miR528, OsmiR528, OsMIR528, osa-MIR528, miR528*, osa-miR528, osa-miR528-5p, MIR528-T1, MIR528-T2,miR166k, osa-miR166kosa-miR166k-3p osa-miR166k-5p,miR168b, osa-miR168b, osa-MIR168b,miR171g, osa-miR171g,miR444b, osa-MIR444b, osa-miR444b, osa-miR444b.1, osa-miR444b.2,miR396d, osa-miR396d, osa-MIR396d,miR171b, osa-miR171b
42321	12136031	Jiang N., Bao Z., Temnykh S., Cheng Z., Jiang J., Rod A Wing, Susan R McCouch, Susan R Wessler	Dasheng: a recently amplified nonautonomous long terminal repeat element that is a major component of pericentromeric regions in rice.	Genetics	161(3)	1293-305	2002	DASHENG	Dasheng
42322	16895613	Lokesh P Tripathi, R Sowdhamini	Cross genome comparisons of serine proteases in Arabidopsis and rice.	BMC Genomics	7	200	2006	SUB61,_,SUB10,_,SDD1,SCP53,SUB52,_,SUB41,SUB23,SUB57,_,SUB48,SUB47,SUB11,SUB17,SUB53,SCP16,_,_,_,_,_,_,AL3,SCP33,_,SUB59,SUB27,SUB43,_,SUB46,SCP51,SCP52,_,_,_,_,_,SUB55,SUB62,_,SUB54,SUB40,_,SUB63,SUB19,_,_,SUB36,SCP42,SUB31,_,_,SCP18,_,SUB39,_,SCP23,SCP61,SCP32,_,_,SCP31,SCP19,_,SUB49,_,_,_,_,_,SUB50,SCP22,SUB56,SCP38,SCP37,SCP35,SUB8,CLPP3,SCP47,SCP48,SCP41,_,SCP43,CPD2B,CPD3L,CLP7,_,_,_,_,_,_,SCP64,CPD1,_,_,CLPR4,_,_,_,_,SUB1,_,_,SUB7,_,SUB24,_,SCP27,_,SCP66,_,_,_,_,_,_,_,_,SUB2,_,SCP45,_,_,SUB34,_,_,SUB35,SCP40,SCP59,_,RADA,CLPP5,_,SUB18,_,_,_,_,SUB29,SCP44,_,_,SUB20,HWI2,GS5,SUB30,_,RSP1,SUB37,SUB22,_,CLPP4,SUB15,VYL,_,SUB58,TCM5,SCP54,SUB21,SCP57,SUB13,SUB33,SUB38,_,SCP29,_,SUB12,SUB4,SCP30,SUB25,_,_,SUB28,_,SCP63,_,_,SCP25,SCP20,SUB3,SCP36,SUB32,SUB16,SCP21,MSP,_,SCP49,SUB14,SCP24,CPD3,SUB60,SCP14,SCP17,SCP15,SCP9,SCP13,SCP12,SCP11,SCP8,SCP4,SCP5,SCP7,SCP1,SCP56,_,SCP2,SUB44,SCP34,SUB45,SUB51	OsSub61,OsDegp14, DEGP14, OsDeg-like 4,OsSub10,OsPOP2, POP2,OsSDD1, OsSub26, SUB26,OsSCP53,OsSub52,OsPOP4, POP4,OsSub41,OsSub23,OsSub57,OsPOP14, POP14,OsSub48,OsSub47,OsSub11,OsSub17,OsSub53,OsSCP16,OsPOP5, POP5,OsPOP9, POP9,OsPOP8, POP8,OsRhmbd4, RHMBD4,OsProCP3, PROCP3,OsDegp8, DEGP8, OsDeg15,OsClp8, CLP8, OsClpR1, ClpR1,OsSCP33,OsRhmbd10, RHMBD10,OsSub59,OsSub27,OsSub43,OsRhmbd9, RHMBD9,OsSub46,OsSCP51,OsSCP52,OsClp13, CLP13,OsPOP11, POP11,OsPOP21, POP21,OsCLP3, OsClp3, CLP3,OsPOP19, POP19,OsSub55,OsSub62,OsPOP16, POP16,OsSub54,OsSub40,OsPOP17, POP17,OsSub63,OsSub19,OsPOP7, POP7,OsPOP15, POP15,OsSub36,OsSCP42,OsSub31,OsDegp13, DEGP13, OsDeg-like 3,OsRhmbd17, RHMBD17,OsSCP18,OsPOP20, POP20,OsSub39,OsDegp15, DEGP15, OsDeg5,OsSCP23,OsSCP61, OsSCP62, SCP62,OsSCP32,OsSigP7, SIGP7,OsSTA82, STA82, OsPOP6, POP6,OsSCP31,OsSCP19,OsPOP10, POP10,OsSub49,OsRhmbd15, RHMBD15,OsPOP18, POP18,OsRhmbd18, RHMBD18,OsRhmbd6, RHMBD6,OsProCP1, PROCP1,OsSub50,OsSCP22,OsSub56,  OsRING474, RING474,OsSCP38,OsSCP37,OsSCP35,OsSub8,OsClpP3, OsClp2, CLP2,OsSCP47,OsSCP48,OsSCP41,OsSigP6, SIGP6,OsSCP43,OsSCP10, SCP10,R-CPD3L, cbp31, OsSCP39, SCP39,OsClp7, OsClpP2, ClpP2,OsRhmbd13, RHMBD13,OsSBeL1, SBeL1, SBEL1,OsClp10, CLP10,OsSigP1, SIGP1,OsSigP3, SIGP3,OsCttP2, CTTP2,OsSCP64,cbp1, R-CPD1, CBP I, CBP1, OsSCP65, SCP65,OsClp12, CLP12,OsClp5, CLP5,OsClpR4, ClpR4, OsClp1, CLP1,OsProtIV1, PROTIV1,OsDegp6, DEGP6, OsDeg2,OsDegp10, DEGP10, OsDeg9.2,OsPOP3, POP3,OsSub1, OsDHHC01, DHHC01, OsDHHC1, DHHC1,OsLonP3, LONP3,OsLonP1, LONP1,OsSub7,OsSTA4, OsRhmbd1, RHMBD1,OsSub24,OsDegp11, DEGP11, OsDeg-like 2,OsEnS-75, OsSCP27, OsSCP28, SCP28,OsDegp3, DEGP3, OsDeg9.1,OsSCP66,OsRhmbd11, RHMBD11,OsLon1, LON1, OsLonP4, LONP4, LON2 ,OsDegp12, DEGP12, OsDeg14,OsSigP4, SIGP4,OsClp9, CLP9,OsProCP2, PROCP2,OsNucAP3, NUCAP3,OsPOP13, POP13,OsSub2, SLP1, OsSLP1,OsRhmbd3, RHMBD3,OsSCP45, OsSCP46, SCP46,OsRhmbd12, RHMBD12,OsSigP2, SIGP2,OsSub34,OsRhmbd7, RHMBD7,OsSigP5, SIGP5,OsSub35,OsSCP40,OsSCP59, OsSCP60, SCP60,MOS3/SAR3, MOS3, SAR3, OsNucAP1, NUCAP1, OsNup96, Nup96,OsRADA, OsRadA, OsLonP2, LONP2,OsClpP5, ClpP5, OsClp4, CLP4,OsRhmbd8, RHMBD8,OsSub18,OsCttP1, CTTP1,OsCttP3, CTTP3,OsRhmbd14, RHMBD14,OsRhmbd2, RHMBD2,OsSub29,OsSCP44,OsDegp2, DEGP2, OsDeg7,OsDegp5, DEGP5, OsDeg8,OsSP1, SP1, OsSub20,Hwi2, OsHWI2, OsSub9, SUB9,OsSCP26, SCP26, OsGS5,OsSub30,OsDegp1, DEGP1, OsDeg-like 1,OsRSP1, OsSub5, SUB5, OsSub6, SUB6,OsSub37,OsSub22, OsSASP, SASP ,OsDegp4, DEGP4, OsDeg-like 6,OsClpP4, ClpP4, OsClp11, CLP11,OsSub15,OsClpP6, ClpP6, CLP6, NAL9, NAL9/VYL,OsRhmbd5, RHMBD5,OsSub58,OsDegp7, DEGP7, OsDeg10, DEPG10, OsDEPG10,OsSCP54, OsSCP55, SCP55,OsSub21,OsSCP57, OsSCP58, SCP58,OsSub13,OsSub33,OsSub38,OsProCP4, PROCP4,OsSCP29,OsDegp9, DEGP9, OsDeg1,OsSub12,OsSub4,OsSCP30,OsSub25,OsPOP22, POP22,OsNucAP2, NUCAP2,OsSub28,OsPOP12, POP12,OsSCP63,OsProCP5, PROCP5,OsRhmbd16, RHMBD16,OsSCP25,OsSCP20,OsSub3,OsSCP36,OsSub32,OsSub16,OsSCP21,OsSub42, SUB42, OsSP2, OS-MSP, OsMSP,OsPOP1, POP1,OsSCP49, OsSCP50, SCP50,OsSub14,OsSCP24,cbp3, R-CPD3, OsSCP6, SCP6,OsSub60,OsSCP14,OsSCP17,OsSCP15,OsSCP9,OsSCP13,OsSCP12,OsSCP11,OsSCP8,OsSCP4,OsSCP5,OsSCP7,OsSCP1,OsSCP56,OsPOP23, POP23,OsSCP2, SCP3, OsSCP3,OsSub44,OsSCP34,OsSub45,OsSub51
42323	17145706	Ouyang S., Zhu W., Hamilton J., Lin H., Campbell M., Childs K., Fran?oise Thibaud-Nissen, Renae L Malek, Lee Y., Zheng L., Orvis J., Haas B., Wortman J., C Robin Buell	The TIGR Rice Genome Annotation Resource: improvements and new features.	Nucleic Acids Res.	35(Database issue)	D883-7	2007	SUB11,SUB21,SUB41,SUB53,_,_,_,_,_,_,_,_,SUB3,_,_,SUB59,SUB29,_,_,SUB54,_,SCP64,_,SCP16,SUB35,SUB20,SCP30,SCP33,SCP42,SCP51,RSP1,SCP61,_,SUB40,CLPR4,_,_,SCP4,SCP44,SUB63,_,SUB60,_,SUB58,SCP18,SCP23,SUB62,MSP,_,SUB13,_,_,SUB61,_,_,_,_,SUB22,_,_,_,SUB48,SUB44,_,SUB15,SUB49,_,SUB50,_,SUB36,SUB4,SCP19,SUB46,_,SCP56,_,SCP32,_,SCP31,SCP5,SCP21,_,SCP37,_,SUB7,_,_,_,_,_,SUB14,VYL,_,SUB39,SCP36,SCP38,SCP43,SCP41,SCP48,SCP40,SCP53,SCP57,CLP7,SUB1,CPD3L,SCP66,SUB47,_,SUB2,SCP45,RADA,_,CLPP3,SUB38,CPD2B,_,SUB57,SUB33,SUB16,CPD1,SCP59,GS5,SUB43,_,_,SUB56,SUB25,_,_,_,_,_,_,_,SUB34,_,_,_,_,SCP27,_,_,_,SCP49,_,_,AL3,_,_,SCP34,SUB37,SUB45,SCP54,SUB17,_,_,SUB12,SUB30,SUB31,TCM5,_,SUB28,_,CLPP4,SCP47,_,_,SDD1,SCP35,SUB52,SUB27,SCP29,SUB51,_,HWI2,_,SUB55,SUB32,SUB24,SUB10,SCP52,SUB19,_,SUB23,_,_,_,SCP20,CLPP5,SCP22,_,CPD3,SCP25,_,_,SCP24,SUB18,_,_,SCP17,SCP14,SCP15,SCP12,SCP13,SCP9,SCP8,SCP11,SCP2,SCP7,_,SCP1,SCP63,SUB8	OsSub11,OsSub21,OsSub41,OsSub53,OsDegp4, DEGP4, OsDeg-like 6,OsPOP2, POP2,OsDegp1, DEGP1, OsDeg-like 1,OsRhmbd5, RHMBD5,OsPOP7, POP7,OsPOP4, POP4,OsDegp2, DEGP2, OsDeg7,OsPOP9, POP9,OsSub3,OsPOP14, POP14,OsSTA82, STA82, OsPOP6, POP6,OsSub59,OsSub29,OsPOP13, POP13,OsPOP11, POP11,OsSub54,OsRhmbd4, RHMBD4,OsSCP64,OsCttP2, CTTP2,OsSCP16,OsSub35,OsSP1, SP1, OsSub20,OsSCP30,OsSCP33,OsSCP42,OsSCP51,OsRSP1, OsSub5, SUB5, OsSub6, SUB6,OsSCP61, OsSCP62, SCP62,OsPOP23, POP23,OsSub40,OsClpR4, ClpR4, OsClp1, CLP1,OsProtIV1, PROTIV1,OsDegp8, DEGP8, OsDeg15,OsSCP4,OsSCP44,OsSub63,OsPOP19, POP19,OsSub60,OsCttP1, CTTP1,OsSub58,OsSCP18,OsSCP23,OsSub62,OsSub42, SUB42, OsSP2, OS-MSP, OsMSP,OsPOP22, POP22,OsSub13,OsDegp13, DEGP13, OsDeg-like 3,OsPOP5, POP5,OsSub61,OsPOP10, POP10,OsProCP5, PROCP5,OsPOP15, POP15,OsDegp5, DEGP5, OsDeg8,OsSub22, OsSASP, SASP ,OsPOP16, POP16,OsPOP17, POP17,OsDegp6, DEGP6, OsDeg2,OsSub48,OsSub44,OsPOP12, POP12,OsSub15,OsSub49,OsSBeL1, SBeL1, SBEL1,OsSub50,OsRhmbd15, RHMBD15,OsSub36,OsSub4,OsSCP19,OsSub46,OsPOP21, POP21,OsSCP56,MOS3/SAR3, MOS3, SAR3, OsNucAP1, NUCAP1, OsNup96, Nup96,OsSCP32,OsProCP1, PROCP1,OsSCP31,OsSCP5,OsSCP21,OsDegp15, DEGP15, OsDeg5,OsSCP37,OsSigP7, SIGP7,OsSub7,OsPOP18, POP18,OsCLP3, OsClp3, CLP3,OsRhmbd10, RHMBD10,OsPOP8, POP8,OsRhmbd16, RHMBD16,OsSub14,OsClpP6, ClpP6, CLP6, NAL9, NAL9/VYL,OsRhmbd18, RHMBD18,OsSub39,OsSCP36,OsSCP38,OsSCP43,OsSCP41,OsSCP48,OsSCP40,OsSCP53,OsSCP57, OsSCP58, SCP58,OsClp7, OsClpP2, ClpP2,OsSub1, OsDHHC01, DHHC01, OsDHHC1, DHHC1,R-CPD3L, cbp31, OsSCP39, SCP39,OsSCP66,OsSub47,OsRhmbd13, RHMBD13,OsSub2, SLP1, OsSLP1,OsSCP45, OsSCP46, SCP46,OsRADA, OsRadA, OsLonP2, LONP2,OsClp9, CLP9,OsClpP3, OsClp2, CLP2,OsSub38,OsSCP10, SCP10,OsDegp9, DEGP9, OsDeg1,OsSub57,OsSub33,OsSub16,cbp1, R-CPD1, CBP I, CBP1, OsSCP65, SCP65,OsSCP59, OsSCP60, SCP60,OsSCP26, SCP26, OsGS5,OsSub43,OsProCP4, PROCP4,OsProCP3, PROCP3,OsSub56,  OsRING474, RING474,OsSub25,OsDegp11, DEGP11, OsDeg-like 2,OsSigP2, SIGP2,OsSigP1, SIGP1,OsLon1, LON1, OsLonP4, LONP4, LON2 ,OsSigP6, SIGP6,OsSigP4, SIGP4,OsRhmbd6, RHMBD6,OsSub34,OsClp12, CLP12,OsSigP3, SIGP3,OsDegp14, DEGP14, OsDeg-like 4,OsRhmbd9, RHMBD9,OsEnS-75, OsSCP27, OsSCP28, SCP28,OsClp13, CLP13,OsDegp10, DEGP10, OsDeg9.2,OsSigP5, SIGP5,OsSCP49, OsSCP50, SCP50,OsRhmbd7, RHMBD7,OsRhmbd14, RHMBD14,OsClp8, CLP8, OsClpR1, ClpR1,OsPOP20, POP20,OsRhmbd8, RHMBD8,OsSCP34,OsSub37,OsSub45,OsSCP54, OsSCP55, SCP55,OsSub17,OsClp10, CLP10,OsRhmbd11, RHMBD11,OsSub12,OsSub30,OsSub31,OsDegp7, DEGP7, OsDeg10, DEPG10, OsDEPG10,OsRhmbd17, RHMBD17,OsSub28,OsProCP2, PROCP2,OsClpP4, ClpP4, OsClp11, CLP11,OsSCP47,OsDegp12, DEGP12, OsDeg14,OsCttP3, CTTP3,OsSDD1, OsSub26, SUB26,OsSCP35,OsSub52,OsSub27,OsSCP29,OsSub51,OsNucAP3, NUCAP3,Hwi2, OsHWI2, OsSub9, SUB9,OsNucAP2, NUCAP2,OsSub55,OsSub32,OsSub24,OsSub10,OsSCP52,OsSub19,OsRhmbd2, RHMBD2,OsSub23,OsSTA4, OsRhmbd1, RHMBD1,OsRhmbd12, RHMBD12,OsLonP3, LONP3,OsSCP20,OsClpP5, ClpP5, OsClp4, CLP4,OsSCP22,OsRhmbd3, RHMBD3,cbp3, R-CPD3, OsSCP6, SCP6,OsSCP25,OsLonP1, LONP1,OsDegp3, DEGP3, OsDeg9.1,OsSCP24,OsSub18,OsPOP3, POP3,OsPOP1, POP1,OsSCP17,OsSCP14,OsSCP15,OsSCP12,OsSCP13,OsSCP9,OsSCP8,OsSCP11,OsSCP2, SCP3, OsSCP3,OsSCP7,OsClp5, CLP5,OsSCP1,OsSCP63,OsSub8
42324	15914931	Kiribuchi K., Jikumaru Y., Kaku H., Minami E., Hasegawa M., Kodama O., Seto H., Okada K., Nojiri H., Yamane H.	Involvement of the basic helix-loop-helix transcription factor RERJ1 in wounding and drought stress responses in rice plants.	Biosci. Biotechnol. Biochem.	69(5)	1042-4	2005	BHLH6	OsbHLH006, bHLH006, OsbHLH6, bHLH6, RERJ1, OsRERJ1, bHLH35
42325	0	Kazuhiro Ohtsu Sawako Hamanaka Katsumi yamazaki Mikio Nakazono	Characterization of a cDNA Encoding a Novel Subunit for cytochrome c (COX6b) from Rice	Breed. Sci.	49	211-215	1999	_	OsCOX6b1, COX6b1, OsCOX6b-1, COX6b-1
42326	0	G. Park S., O. Kim S., J. Koh H., H. Lee Y.	A Blast Lesion Mimic Mutant of Rice	Advances in Rice Blast Research	15	79-85	2000	BLM	blm (=bl2)
42327	0	Wen-Bing CHEN, Ikuo NAKAMURA, Yo-Ichiro SATO, Hirokazu NAKAI	Distribution of deletion type in cpDNA of cultivated and wild rice	The Japanese Journal of Genetics	68(6)	597-603	1993	_	ORF100
42328	15806324	Yamamoto T., Mori Y., Ishibashi T., Uchiyama Y., Ueda T., Ando T., Hashimoto J., Kimura S., Sakaguchi K.	Interaction between proliferating cell nuclear antigen (PCNA) and a DnaJ induced by DNA damage.	J. Plant Res.	118(2)	91-7	2005	PCNA,_	OsPCNA,OsDjA7, OsDnaJ
42329	0	Naoki MIDOH, Michiaki IWATA	Expression of Defense-related Genes by Probenazole or 1, 2-Benzisothiazole-3(2H)-one 1, 1-dioxide	Journal of Pesticide Science			1997	PR10A	PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 
42330	10939258	Z Yin, J Chen, L Zeng, M Goh, H Leung, G S Khush, G L Wang	Characterizing rice lesion mimic mutants and identifying a mutant with broad-spectrum resistance to rice blast and bacterial blight.	Mol. Plant Microbe Interact.	13(8)	869-76	2000	PR10A,SPL11,PR1B	PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,spl11, spl11*, OsPUB11, PUB11,  OsPUB11/SPL11, PUB11/SPL11,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1, OsPR1a, PR1a
42331	0	WANG Li-Juan, TIAN Ying-Chuan, HE Chao-Zu	Cloning of a Novel Rice Gene OsLSD1 and Bioinformatic Analysis of LSD1-like gene Family From Arabidopsis and Rice	Prog. Biochem. Biophys.	32(3)	268-274	2005	LSD1	OsLSD1, OsLOL1, OsLSD1.1, LSD1.1
42332	11332734	L Xiong, M W Lee, M Qi, Y Yang	Identification of defense-related rice genes by suppression subtractive hybridization and differential screening.	Mol. Plant Microbe Interact.	14(5)	685-92	2001	PDR9,_,_,_,GRP3,_,STR12,PR1B,_,RSH3,_,_,_,MSRMK2,_,BHLH6,PR10A,CHI2,RPN7,BETACA1,TIFY10B,_,_,PXG9,_,SAP8,MTI1A,KCS2,WRKY108,SERK1,RCA,_,CCA1,RPL13B,SALT,ERF93,NPR4,_,_,GSTU12,PGK2,CKX4,NAC6,MDH8.1,UGT74J5,_,_,_,MPK7,DGK3,LEA9,_,CBSCBSPB4	OsPDR9, ospdr9, OsPDR3, PDR3, OsABCG36/OsPDR9, OsABCG36,,OsCPR1, CPR1,C10728, OsChib3a, Chib3a, OsPR31, PR31, PR8, OsPR8,OsGRP3, RTP, RBP-152 ,OsATL15, ATL15,OsStr12, Str12, TROL, Os-TROL, OsTROL,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1, OsPR1a, PR1a,ARF, ARF1, OsARFA1b, ARFA1b,OsRSH3,OsNPK1-PK, NPK1-PK, OsMKKK62, MKKK62, OsMAPKKK62, MAPKKK62, MEK7, OsMEK7,,WZF1, OsWZF1, DLN99, OsDLN99, OsZFP1, ZFP1,OsMSRMK2, OsMAPK5, OsMAP1, OsMPK3, OsBIMK1, OsMAPK2, MPK5, BIMK1, MAPK2, MAPK5, MPK3, OsMPK5, OsMAPK3, OsMAPK5b, MAPK3,,OsbHLH006, bHLH006, OsbHLH6, bHLH6, RERJ1, OsRERJ1, bHLH35,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsCHI2, OsCHI4,OsRpn7, Rpn7 ,OsCA, CA, OsbetaCA1, betaCA1, CA1,OsJAZ6, OsJAZ 7, OsJAZ7, OsTIFY10B, JAZ6, JAZ7,,OsGME1, GME1,OsPXG9,,Osi-SAP8, OsiSAP8, OsSAP8, OsSAP1, SAP1,MT1a, OsMT1a, OsMT1e, OsMT-I-1a, MT-I-1a, OsMT1e-P, MTa, rgMT, OsMT-1, rgMT-1,KCS, OsKCS2,OsWRKY108,OsSERK1, OsSERK2, OsBiSERK1, SERK2, BiSERK1, OsSerk2, OsBAK1-2,OsRcaII, rca, rcaII, OsRcaI, RCAI, ME137, OsRCA1, RCA, RCAalpha, OsRCAalpha, OsRCAbeta,,OsCCA1, OsLHY, LHY, LHY-like_chr.8, COC1, DLN203, OsDLN203, LEM1, OsLEM1, Nhd1, OsNhd1,RPL13b, OsRPL13b,salT*(sal1), SalT1*, sal1, Sal1, SALT, ML, SalT, OsSalT, OsJRL, JRL, Osl43, OsL43, OsMBL1, MBL1, OsJRL01, JRL01, OsJRL1, JRL1,OsERF1, ERF1, OsERF#093, OsERF093, OsERF93, AP2/EREBP#168, AP2/EREBP168,OsNPR4,,,OsGSTU12, OsGSTU6.2, GSTU6.2,OsPGK2, OsPGK2a, OsPGK2b, OsPGK2c, PKP ,OsCKX4, ckx4, OsSCRM, OsSCRM2, SCRM, SCRM2,OsNAC6, ONAC048, NAC48, SNAC2, SNAC2/OsNAC6, OsNAC6/ONAC048, OsSNAC2, SNAC-2, OsSNAC-2, OsNAC2,MDH, OsMDH8.1, OsLdh9, Ldh9,UDP-GT, Os79, OsUGT74J5,GRP, Osgrp-2, OsGRP-2, GRCWP, OsGRP2, GRP2,,OS-PYDK, Ospdhk, PDHK, PDK, OsPDK, Ospdhk2, pdhk2 OsHRK1, HRK1,OsMPK7, OsMAPK44, MAPK44, OsMAPK20-5, MAPK20-5,OsDGK3,OsLEA9, OsLEA5, LEA5,,OsCBSCBSPB4
42333	0	Wang H., Taketa S., Miyao A., Hirochika H., Ichii M.	Isolation of a novel lateral-rootless mutant in rice (Oryza sativa L.) with reduced sensitivity to auxin	Plant Science	170	70-77	2006	LRT2	CYC2, cyc2*, cyc2, OsCYP2, Cyp2, OsCYP19-2, CYP19-2, OsCYP-2, OsCyp2-P, OsCyp2, OsCYP19-1, LRT2/OsCYP2, lrt2*, lrt2, Ppcti 
42334	0	Zaibin H.A.O., Masahiko ICHII	A Mutant RM109 of Rice (Oryza sativa L.) Exhibiting Altered lateral root Initiation and Gravitropism.	Japanese Journal of Crop Science	68(2)	245-252	1999	LRT1	Lrt1*, Lrt1, Lrt 1
42335	26709535	Walter T., King Z., Walker K.D.	A tyrosine aminomutase from Rice (Oryza sativa) Isomerizes (S)-alpha- to (R)-beta-Tyrosine with Unique High Enantioselectivity and Retention of Configuration.	Biochemistry			2015	_	OsPAL03, OsPAL9, TAM1, OsTAM1, TAM, OsTAM
42336	26631749	Wang L., Sun S., Jin J., Fu D., Yang X., Weng X., Xu C., Li X., Xiao J., Zhang Q.	Coordinated regulation of vegetative and reproductive branching in rice.	Proc. Natl. Acad. Sci. U.S.A.	112(50)	15504-9	2015	IDS1,MIR172B,RFL,MIR156D,RCN1,WFP,PAP2,LAX1,SNB,RSR1,MIR529A,SPL17,WD40-66,SPL7,ASP1,MIR172D,MIR529B	OsIDS1, AP2/EREBP#033, AP2/EREBP33, AP2-33/IDS1, AP2-33, AP2-2, DLN104, OsDLN104,OsmiR172b, miR172b, osa-MIR172b, Osa-miR172b ,RFL, OSL, FL, APO2, APO2/RFL, SSC, SSC/RFL/APO2, OsRFL, OsFL, OsAPO2, OsSSC,miR156d, OsmiR156d, osmiR156d, osa-miR156d, osa-MIR156d,Rcn1, FDR2, Fdr2, RCN1/FDR2, OsRCN1,OsSPL14, SPL14, IPA1, WFP/IPA1, OsSPL14/WFP/IPA1, OsIPA1,  IPA1/OsSPL14,MADS34, OsMADS34, RMADS212/RMADS217/RMADS221, OsPAP2/MADS34, MADS34/PAP2, PAP2/OsMADS34, OsMADS34/PAP2, OsMADS19,lax, lax(lx), lx, OsbHLH123, bHLH123, OsLAX1, BOS1, OsBOS1,AP2/EREBP#073, AP2/EREBP73, AP2-3, OsAP2-3, SSH1, OsSSH1, OsSNB, DLN181, DLN181a, DLN181b, OsDLN181, OsDLN181a, OsDLN181b, SUI4, OsSUI4, SUI4/SNB,AP2/EREBP#090, AP2/EREBP90, OsTOE1, TOE1, qHD5, AP2-1, AP2/EREBP/RSR1, OsRSR1, DLN130, DLN130a, DLN130b, OsDLN130, OsDLN130a, OsDLN130b,miR529a, Osa-miR529a, OsmiR529a,OsSPL17,OsWD40-66, TPR3, OsTPR3, TPR1, OsTRP1, OsTPR3, OsTPL2, TPL2, OsTPL, TPL,OsSPL7,OsLIS-L1, OsWD40-155, ASP1, TPR2, OsTPR2, OsREL2, REL2, OsTPL3, TPL3, OsTPL2, TPL2, ASP-LSL,OsmiR172d, miR172d, osa-MIR172d osa-miR172d osa-miR172d-3p osa-miR172d-5p, Osa-miR172d,miR529b, Osa-miR529b, OsmiR529b
42337	26680197	Gutjahr C., Gobbato E., Choi J., Riemann M., Johnston M.G., Summers W., Carbonnel S., Mansfield C., Yang S.Y., Nadal M., Acosta I., Takano M., Jiao W.B., Schneeberger K., Kelly K.A., Paszkowski U.	Rice perception of symbiotic arbuscular mycorrhizal fungi requires the karrikin receptor complex.	Science	350(6267)	1521-4	2015	AOC,KAI2	OsAOC, AOC1, OsAOC1, HB, CPM2, OsAOC4, AOC4,D14L, OsD14L, OsKAI2
42338	26663563	Dai X., Wang Y., Zhang W.H.	OsWRKY74, a WRKY transcription factor, modulates tolerance to phosphate starvation in rice.	J. Exp. Bot.			2015	WRKY74	OsWRKY74
42339	26681628	Kakar K.U., Ren X.L., Nawaz Z., Cui Z., Li B., Xie G., Hassan M.A., Ali E., Sun G.	Consortium of rhizobacterial strains and biochemical growth elicitors improve cold and drought stress tolerance in rice (Oryza sativa L.).	Plant Biol (Stuttg)			2015	MYB3R2,_,WRKY11,CDPK7,CNGC8,GOLS1,CNGC2,DREB1A,NAC6,CNGC5	OsMYB3R-2, OsMYB3R2, OsMSL07, MSL07, MSL7, DLN28, OsDLN28,OsLTPd11, OsLTP6, OsLtpVI.3, OsDIL, DIL,OsWRKY11, Dlf1, OsWRKY11.1, OsWRKY11.2,OsCDPK7, OsCPK7, CDPK1, OsCDPK11, CDPK12, OsCDPK13,OsCNGC8, OsCNGC6, CNGC6, OsCNGC9,OsGolS1, GolS1, OsGolS2, GolS2,OsCNGC2, OsCNGC1, CNGC1,OsDREB1A, Os DREB1A, CBF3, OsCBF3, OsDREB1A/OsCBF3, ERF24, OsERF24, OsERF024, OsERF#024, AP2/EREBP#114, AP2/EREBP114, OsDREBL,OsNAC6, ONAC048, NAC48, SNAC2, SNAC2/OsNAC6, OsNAC6/ONAC048, OsSNAC2, SNAC-2, OsSNAC-2, OsNAC2,OsCNGC5, OsCNGC10, CNGC10  
42340	26634536	Xu X., Tan Y.P., Cheng G., Liu X.Q., Xia C.J., Luo F.Y., Wang C.T.	Genomic survey and gene expression analysis of the VDAC gene family in rice.	Genet. Mol. Res.	14(4)	15683-96	2015	_,_,VDAC1,VDAC7,_,_,_,_	OSVDAC3, osvdac3, OsVDAC3, VDAC3,OsVDAC4, OsVDAC5, VDAC5,OSVDAC1, osvdac1, OsVDAC1,OSVDAC7, osvdac7, OsVDAC7, TOM40, OsTOM40,NP1977, OsVDAC8, VDAC8, Os1977,OSVDAC4, osvdac4, OsVDAC4, VDAC4,OSVDAC2, osvdac2, OsVDAC2, VDAC2,OSVDAC6, osvdac6, OsVDAC6, VDAC6
42341	26679011	Zhou X., Wang J., Peng C., Zhu X., Yin J., Li W., He M., Wang J., Chern M., Yuan C., Wu W., Ma W., Qin P., Ma B., Wu X., Li S., Ronald P., Chen X.	Four receptor-like cytoplasmic kinases regulate development and immunity in rice.	Plant Cell Environ.			2015	D61,RLCK118,RLCK57,RLCK107,RLCK176,XA21	d61*, dwf42, d61, OsBRI1, OSBRI1, BRI1, Os BRI1, Osbri1, OsBRKq1, BRKq1,OsRLCK118,OsRLCK57,OsRLCK107,OsRLCK176,Xa21*, Xa21, OsXA21
42342	26666551	Tripathy M.K., Tiwari B.S., Reddy M.K., Deswal R., Sopory S.K.	Ectopic expression of PgRab7 in rice plants (Oryza sativa L.) results in differential tolerance at the vegetative and seed setting stage during salinity and drought stress.	Protoplasma			2015	SODCC1,HKT4,RAB7B1,APX1,HKT1,SOS1,CATB,CATA,NHX1,NHX2,GLR3.1,DRW1	sodCc1, SODCC.1, sodA, RSODA, OsSOD1, OsCSD2, OsSodA, SodCc2, OsSODA1, SODCc1-Cu/Zn, OsCu/Zn-SOD2, Cu/Zn-SOD2, OsCSD1.2, CSD1.2, OsSODCc1-Cu/Zn, SODCc1-Cu/Zn, CuZnSOD1, Cu/ZnSOD1, OsCu/ZnSOD1, OsCSD4, CDS4, CuZnSOD4, OsCuZnSOD1, OsCSD1, CSD1, OsSOD2,OsHKT4, OsHKT1;1, HKT1;1, OsHKT2, RNC4, OsHKT1;1-FL, OsHKT1;1-V1, OsHKT1;1-V2, OsHKT1;1-V3, OsHKT1;1-V4, OsHKT1;1-V5, OsHKT1;1-V6, OsHKT1;1-V7, OsHKT1;1-V8,OsRab7B1, Rab7B1, OsRab7,OsAPX1, APXa, OsAPXa, OsAPx01, OsAPx1, OSAPX1, APx1, cAPX, APX2, cAPXa, OscAPXa,OsHKT1, OsHKT2;1, HKT2;1, Ni (Nipponbare)-OsHKT1, Po (Pokkali)-HKT1, OsHKT1;1, HKT1;1,OsSOS1, OsNHA1, NHA1, SOS1/NHX7, NHX7, OsNHX7,CatB, CAT-B, OsCatB, OsCATB, OsCAT1B, CAT1B, CAT2, OsCAT2,CATA1, Cat A1*, OSCAT-A, Cat2, CatA1, CAT-A, OsCatA, OsCAT, CAT, catA, OSCATA, OsCATc, OsCATA, OsCAT1A, CAT1, OsCAT1, OsCATC, OsCAT2,OsNHX1, OcNHX1, OgNHX1, OrNHX1, OpNHX1, ObNHX1,OsNHX2,OsGLR3.2, GLR3.2, OsGLR3.1, OsGLR4.1, GLR4.1,OsWD40-166, WD40-166, OsDRW1,  OsDWD47, DWD47
42343	26699939	Dou X.Y., Yang K.Z., Ma Z.X., Chen L.Q., Zhang X.Q., Bai J.R., Ye De.	AtTMEM18 plays important roles in pollen tube and vegetative growth in Arabidopsis.	J Integr Plant Biol			2015	_	OsTMEM18, TMEM18
42344	26708413	Weidenbach D., Esch L., M?ller C., Hensel G., Kumlehn J., H?fle C., H?ckelhoven R., Schaffrath U.	Polarized Defence Against Fungal Pathogens Is Mediated by the jacalin-related Lectin Domain of Modular Poaceae-Specific Proteins.	Mol Plant			2015	JAC1	OsJAC1, DIR54, OsDIR54, OsjDIR54, OsJRL29, JRL29
42345	26718470	Li S.B., Xu S.R., Zhang R.N., Liu Y., Zhou R.C.	The antibiosis action and rice induced resistance, mediated by a lipopeptide from Bacillus amyloliquefaciens B014, in controlling rice disease caused by Xanthomonas oryzae pv. Oryzae.	J. Microbiol. Biotechnol.			2015	WRKY45,NCED1,DHN1,NH1	OsWRKY45, OsWRKY45-1, OsWRKY45-2, WRKY45-1, WRKY45-2,OSNCED1, OsNCED-1, OsNCED3, OsNced3, NCED3, OsNCED9, NCED9,LIP9, OsLIP9, lip9, DHN1, DIP1, OsDip1, OsLEA23, OsDhn1, COR410, OsLEA23/DIP1, DIP1/OsLEA23,OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2, DLN5, OsDLN5,  OsBTBA1, BTBA1
42346	26691393	Tu B., Hu L., Chen W., Li T., Hu B., Zheng L., Lv Z., You S., Wang Y., Ma B., Chen X., Qin P., Li S.	Disruption of OsEXO70A1 Causes Irregular Vascular Bundles and Perturbs Mineral Nutrient Assimilation in Rice.	Sci Rep	5	18609	2015	EXO70D1,EXO70F3,EXO70F1,EXO70FX13,RLS2,EXO70A4,EXO70A3	OsEXO70D1, OsExo70D1, OrysaD1_Exo70,OsEXO70F3, OsExo70F3, OrysaF3_Exo70, OsExo70-F3, Exo70-F3,OsEXO70F1, OsExo70F1, OrysaF1_Exo70,OsEXO70FX13, OsExo70FX13, OrysaFX13_Exo70,OsEXO70A1, OsExo70A1, EXO70A1, OrysaA1_Exo70,OsEXO70A4, OsExo70A4, OrysaA4_Exo70,OsEXO70A3, OsExo70A3, OrysaA3_Exo70
42347	26715595	Qin H., Deng Z., Zhang C., Wang Y., Wang J., Liu H., Zhang Z., Huang R., Zhang Z.	Rice GDP-mannose pyrophosphorylase OsVTC1-1 and OsVTC1-3 play different roles in ascorbic acid synthesis.	Plant Mol. Biol.			2015	MPG4,MPG1,MPG3	OsMPG4, OsVTC1-8, VTC1-8,OsMPG1, OsVTC1-1, VTC1-1,OsMPG3, OsVTC1-3, VTC1-3
42348	26697042	Mani B., Agarwal M., Katiyar-Agarwal S.	Comprehensive Expression Profiling of Rice Tetraspanin Genes Reveals Diverse Roles During Development and Abiotic Stress.	Front Plant Sci	6	1088	2015	TET3,TET13,TET7,TET5,TET11,TET12,TET9,TET4,TET15,TET8,TET2,TET6,TET10,TET1,TET14	OsTET3,OsSAP, SAP, OsTET13,OsTET7,OsTET5,OsTET11,OsTET12,OsTET9,OsTET4,OsTET15,OsTET8,OsTET2,OsTET6,OsTET10,OsTET1,OsTET14
42349	26697897	Zhang B., Wang X., Zhao Z., Wang R., Huang X., Zhu Y., Yuan L., Wang Y., Xu X., Burlingame A.L., Gao Y., Sun Y., Tang W.	OsBRI1 activates BR signaling by preventing binding between the TPR and kinase domains of OsBSK3 via phosphorylation.	Plant Physiol.			2015	D2,RLCK119,BRD1,RLCK173,D61,RLCK98,RLCK308	d2, dwf2, CYP90D2, D2/CYP90D2, OsD2, SMG11, OsSMG11, D2/SMG11, OsD2a, OsD2b,OsRLCK119, OsBSK4, BSK4,brd1, OsDWARF, DWARF, OsBR6ox, BR6ox, CYP85A1, CYP85A4, OsDWF, CYP85A1/OsDWARF, OsBRD1, OsCYP85A1,OsRLCK173, OsBSK3, BSK3,d61*, dwf42, d61, OsBRI1, OSBRI1, BRI1, Os BRI1, Osbri1, OsBRKq1, BRKq1,OsRLCK98, OsBSK1, BSK1, OsBSK1-1, BSK1-1,OsRLCK308, OsBSK2, BSK2
42350	26712826	Wang C., Wang Y., Cheng Z., Zhao Z., Chen J., Sheng P., Yu Y., Ma W., Duan E., Wu F., Liu L., Qin R., Zhang X., Guo X., Wang J., Jiang L., Wan J.	The role of OsMSH4 in male and female gamete development in rice meiosis.	J. Exp. Bot.			2015	MSH5,_,RPA1C,RPA2C,RPA1A,RPA2B	OsMSH5,OsMSH4, MSH4,RPA1c, OsRPA1c,RPA2c, OsRPA2c,OsRPA70a, OsRPA1a, RPA1a,RPA2b, OsRPA2b
42351	26546447	Soundappan I., Bennett T., Morffy N., Liang Y., Stanga J.P., Abbas A., Leyser O., Nelson D.C.	SMAX1-LIKE/D53 Family Members Enable Distinct max2-Dependent Responses to Strigolactones and Karrikins in Arabidopsis.	Plant Cell	27(11)	3143-59	2015		
42352	26546446	Wang L., Wang B., Jiang L., Liu X., Li X., Lu Z., Meng X., Wang Y., Smith S.M., Li J.	Strigolactone Signaling in Arabidopsis Regulates Shoot Development by Targeting D53-Like SMXL Repressor Proteins for Ubiquitination and Degradation.	Plant Cell	27(11)	3128-42	2015		
42353	26566920	Gupta Y.K., Dagdas Y.F., Martinez-Rocha AL., Kershaw M.J., Littlejohn G.R., Ryder L.S., Sklenar J., Menke F., Talbot N.J.	Septin-Dependent Assembly of the Exocyst Is Essential for Plant Infection by Magnaporthe oryzae.	Plant Cell	27(11)	3277-89	2015		
42354	26578814	Huang W., Yu C., Hu J., Wang L., Dan Z., Zhou W., He C., Zeng Y., Yao G., Qi J., Zhang Z., Zhu R., Chen X., Zhu Y.	Pentatricopeptide-repeat family protein Rf6 functions with hexokinase 6 to rescue rice cytoplasmic male sterility.	Proc. Natl. Acad. Sci. U.S.A.	112(48)	14984-9	2015	HXK6,_,_,_	OsHXK6,atp6-orfH79,atp6, N-atp6, B-ATP6, B-atp6, atp6-1,Rf6
42355	26554020	Li L., Zheng W., Zhu Y., Ye H., Tang B., Arendsee Z.W., Jones D., Li R., Ortiz D., Zhao X., Du C., Nettleton D., Scott M.P., Salas-Fernandez MG., Yin Y., Wurtele E.S.	QQS orphan gene regulates carbon and nitrogen partitioning across species via NF-YC interactions.	Proc. Natl. Acad. Sci. U.S.A.	112(47)	14734-9	2015	HAP5C,HAP5B,HAP5A	OsHAP5C, NF-YC, CBF-C, OsNF-YC2, Os-NF-YC2, NF-YC2, NFYC2, OsNF-YC4-1, NF-YC4-1,OsHAP5B, NF-YC, CBF-C, OsNF-YC4, Os-NF-YC4, NF-YC4, NFYC4, OsNF-YC4-3, NF-YC4-3,OsHAP5A, NF-YC, CBF-C, OsNF-YC1, Os-NF-YC1, NF-YC1, NFYC1 , OsNF-YC4-2, NF-YC4-2
42356	26523777	Sosso D., Luo D., Li Q.B., Sasse J., Yang J., Gendrot G., Suzuki M., Koch K.E., McCarty D.R., Chourey P.S., Rogowsky P.M., Ross-Ibarra J., Yang B., Frommer W.B.	Seed filling in domesticated maize and rice depends on SWEET-mediated hexose transport.	Nat. Genet.	47(12)	1489-93	2015	SWEET4	OsSWEET4
42357	26621743	Zhang J., Liu Y., Xia E.H., Yao Q.Y., Liu X.D., Gao L.Z.	Autotetraploid rice methylome analysis reveals methylation variation of transposable elements and their effects on gene expression.	Proc. Natl. Acad. Sci. U.S.A.	112(50)	E7022-9	2015		
42358	26546418	Mishra R.C., Richa, Singh A., Tiwari L.D., Grover A.	Characterization of 5'UTR of rice ClpB-C/Hsp100 gene: evidence of its involvement in post-transcriptional regulation.	Cell Stress Chaperones			2015	HSP101	Oshsp101, OsHSP101, ClpB-cyt, OsClpB-cyt, ClpB-C/Hsp100, OsClpB-C
42359	26602233	Liu M., Lei L., Powers C., Liu Z., Campbell K.G., Chen X., Bowden R.L., Carver B.F., Yan L.	TaXA21-A1 on chromosome 5AL is associated with resistance to multiple pests in wheat.	Theor. Appl. Genet.			2015	_,_	OsXA21-C9, XA21-C9,Xa21, OsXA21, OsXA21-C11, XA21-C11
42360	26564152	Liu J., Zhang C., Wei C., Liu X., Wang M., Yu F., Xie Q., Tu J.	The RING Finger Ubiquitin E3 Ligase OsHTAS Enhances heat tolerance by Promoting H2O2-Induced Stomatal Closure in Rice.	Plant Physiol.	170(1)	429-43	2016	NCED3,ONAC2,UBC5A,UBC5B,HTAS,_,_	OSNCED3, OsNCED-3, OsNCED3, OsNCED3a, NCED3a, OsNCED4, NCED4, OsNECD2, OsNCED2b, NCED2b ,SNAC1, snac1, OsNAC9, ONAC002, ONAC2, ONAC033, ONAC33, ONAC043, ONAC43, ONAC044, ONAC44, OsNAC19, NAC19, SNAC1/ONAC002, OsSNAC1, OsNAC9, OsNAC1,OsUBC5a, OsUBC14, UBC14,OsUBC5b, OsUBC15, UBC15,OsHTAS,  OsRING39, RING39,40SRPS, OsRbs5, Rbs5,S27a
42361	26579177	El-Kereamy A., Bi Y.M., Mahmood K., Ranathunge K., Yaish M.W., Nambara E., Rothstein S.J.	Overexpression of the CC-type glutaredoxin, OsGRX6 affects hormone and nitrogen status in rice plants.	Front Plant Sci	6	934	2015	IPT4,D18,GRX6,IPT9,RR2,GID2,IPT10,IPT8,IPT7,RR4,EUI1,RR6,SD1	OsIPT4,d18-h  (d18-I, d18h), dwf15, d25, d18, d18-k, d18-AD, d18-dy, OsGA3ox2, ga3ox2, OsGA3OX2, GA3OX2, OsGA3ox-2, GA3ox-2, GA3ox1,OsGRX6, OsGrx_I1, Grx_I1,OsIPT9, OsIPT5, IPT5,rr2, Osrr2, OsRR2, Rra10, OsRRA10,gid2, GF14e, OsGF14e, OsGID2, 14-3-3e,OsIPT10,OsIPT8,OsIPT7,rr4, OsRR4, Rra3, OsRRA3,eui1, GA16,17ox, CYP714D1, EUI, CYP714D1/EUI, OsEUI, LG5, OsLG5,OsRR6, rr6, Rra6, OsRRA6,sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2, OsPHQ1, OsPHq1, PHq1
42362	26542958	Kim S.K., Park H.Y., Jang Y.H., Lee K.C., Chung Y.S., Lee J.H., Kim J.K.	OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice.	Planta			2015	EF1,HAP5C,HAP5D,HAP3I,RFT1,HD5,GHD7,HD3A,HAP5B,CO3,HAP3F,SE1	Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,OsHAP5C, NF-YC, CBF-C, OsNF-YC2, Os-NF-YC2, NF-YC2, NFYC2, OsNF-YC4-1, NF-YC4-1,OsHAP5D, NF-YC, CBF-C, OsNF-YC6, Os-NF-YC6, NF-YC6, NFYC6,OsHAP3I, NF-YB, CBF-A, NF-YB8, OsNF-YB8, NFYB8,FT-L 3, OsFTL3, FTL3, FT-L3, RFT, OsRFT1,Hd5(t)*, Hd5, qHD5, HAP3H, OsHAP3H, NF-YB, CBF-A, DTH8 , qHD5(t)*, Ghd8, Ghd8/DTH8, Lhd1, NF-YB11, OsNF-YB11, NFYB11, LH8, DTH8/Ghd8, RH8, DTH8/Ghd8/LHD1, CAR8, DTH8/Ghd8/ OsHAP3H, EF8, OsEF8,Ghd2, Ghd7, OsGhd7, OsCCT26, OsCMF8, OsI, Ghd7/Hd4, Hd4, EH7-1/Hd4, Ghd7-0a, EH7-1, EH7/Ghd7, EH7, OsEH7, GLW7.1, OsGLW7.1,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,OsHAP5B, NF-YC, CBF-C, OsNF-YC4, Os-NF-YC4, NF-YC4, NFYC4, OsNF-YC4-3, NF-YC4-3,OsB, OsCO3, OsBBX27, OsCO3/OsB, OsCCT31, CO3, BBX27, CCT31,OsHAP3F, NF-YB, CBF-A, NF-YB10, OsNF-YB10, NFYB10,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, OsHd1,  Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21
42363	26617632	Li J., Qin R.Y., Li H., Xu R.F., Yang Y.C., Ni D.H., Ma H., Li L., Wei P.C., Yang J.B.	Low-Temperature-Induced Expression of rice ureidoglycolate amidohydrolase is Mediated by a C-Repeat/Dehydration-Responsive Element that Specifically Interacts with Rice C-Repeat-Binding Factor 3.	Front Plant Sci	6	1011	2015	UAH,DREB1A	OsUAH,OsDREB1A, Os DREB1A, CBF3, OsCBF3, OsDREB1A/OsCBF3, ERF24, OsERF24, OsERF024, OsERF#024, AP2/EREBP#114, AP2/EREBP114, OsDREBL
42364	26600124	Lv X.G., Shi Y.F., Xu X., Wei Y.L., Wang H.M., Zhang X.B., Wu J.L.	Oryza sativa Chloroplast Signal Recognition Particle 43 (OscpSRP43) Is Required for Chloroplast Development and Photosynthesis.	PLoS ONE	10(11)	e0143249	2015	YGL9	OscpSRP43, cpSRP43, PGL3, OsPGL3, Os YGL9
42365	26530963	Lee G.W., Chung M.S., Kang M., Chung B.Y., Lee S.	Direct suppression of a rice bacterial blight (Xanthomonas oryzae pv. oryzae) by monoterpene (S)-limonene.	Protoplasma			2015	TPS20	OsTPS20, TPS41, OsTPS41
42366	26607766	Shimono H., Abe A., Aoki N., Koumoto T., Sato M., Yokoi S., Kuroda E., Endo T., Saeki K.I., Nagano K.	Combining mapping of physiological quantitative trait loci and transcriptome for cold tolerance for counteracting male sterility induced by low temperatures during reproductive stage in rice.	Physiol Plant			2015	ASMT4,_,_	ZRP4, OsASMT4, OsCOMT9, COMT9,,qCTR12 
42367	26612069	Lu Q., Zhang M., Niu X., Wang C., Xu Q., Feng Y., Wang S., Yuan X., Yu H., Wang Y., Wei X.	Uncovering novel loci for mesocotyl elongation and shoot length in indica rice through genome-wide association mapping.	Planta			2015	_,RR26,_,_	,OsRR26, Rrb6, Orr6, OsRR16, RR16, OsRRB6,,
42368	26563345	Xue G.P., Rae A.L., White R.G., Drenth J., Richardson T., McIntyre C.L.	A strong root-specific expression system for stable transgene expression in bread wheat.	Plant Cell Rep.			2015	PR1-101,_,_,_,_,PIP2;3,_	OsPR1#101, OsPR1-101, OsPR1L2, PR1L2, OsPRB1, PRB1,RCc2, RCg2, OsHyPRP13, HyP/GRP13, HyPRP13, OsRCg2, OsHyPRP35, HyPRP35,OsRSP3, RSP3,OsGRP7, GRP7,OsMTL1, MTL1,OsPIP2;3, PIP2-3, OsPIP2-2,RCc3, OsHyPRP01, HyP/GRP01, OsHyPRP1, HyP/GRP1, OsRcc3, HyPRP1
42369	26633564	Ramegowda V., Basu S., Gupta C., Pereira A.	Regulation of grain yield in rice under well-watered and drought stress conditions by GUDK.	Plant Signal Behav	10(11)	e1034421	2015	RLCK103,ERF3	GUDK, OsRLCK103,AP37, OsAP37, OsERF3, OsERF#075, OsERF075, OsERF75, ERF75, AP2/EREBP#004, AP2/EREBP4, OsBIERF2, BIERF2, DLN23, OsDLN23
42370	26598971	Zhao J., Qiu Z., Ruan B., Kang S., He L., Zhang S., Dong G., Hu J., Zeng D., Zhang G., Gao Z., Ren D., Hu X., Chen G., Guo L., Qian Q., Zhu L.	Functional Inactivation of Putative Photosynthetic Electron Acceptor Ferredoxin C2 (FdC2) Induces Delayed heading date and Decreased photosynthetic rate in Rice.	PLoS ONE	10(11)	e0143361	2015	GSTU19,HDY1,LAC14,_,_,UCL12,LAC3,ZFP15,MYB11	OsGSTU19, GSTU6, OsGSTU6, OsGSTU6.1, GSTU6.1,OsFdC2, FdC2, OsHDY1, PetF-2,OsLAC14, OsLAC13, LAC13,,,OsUCL12,OsChI1, ChI1, OsLAC3,ZFP 15, OsZFP15,OsMyb11, Myb11, OsMYB60, MYB60, Os2R_MYB93, 2R_MYB93 
42371	26475189	Yang J., Kim S.R., Lee S.K., Choi H., Jeon J.S., An G.	Alanine aminotransferase 1 (OsAlaAT1) plays an essential role in the regulation of starch storage in rice endosperm.	Plant Sci.	240	79-89	2015	FLO4,ALK,ALAAT5,SSI,_,ALAAT3,AGPS1,ALAAT2,ALAAT4,ALAAT,AGPL2,AGPL3,AGPS2	FLO4-4, flo4, flo4-2, flo4-3, ppdk, OsPPDK, PPDK1, CPDK1, PPDKB, OsPPDKB, cyOsPPDKB, OsPBDK, PBDK, osppdkb, PPD, cyPPDK, chPPDKB, chOsPPDKB,alk, SSII-3, OsSSIIa, OsSSII-3, SSIIa, SSS2A, OsSSIIaChr6, SS2a,OsEnS-128, OsAlaAT5, AlaAT5,OsSSI, SSS 1, SSS1, SS1, OsSS1, SSSI, OsSSSI,osppdka, ppdka,OsAlaAT3, AlaAT3,OsAGPS1, APS1, OsAPS1, AGPsma,OsAlaAT2, AlaAT2,OsAlaAT4, AlaAT4,alaAT, ALT-1, OsAlaAT1, AlaAT1,OsAGPL2, osagpl2, APL2, OsAPL2, AGPiso, sh2, Sh2, GIF2, GAS1 ,OsAGPL3, APL3, OsAPL3, AGPlar, OsAGPL1, AGPL1,OsAGPS2a, AGPS2A, AGPS2B, OsAGPS2, osagps2, APS2, APS2a, APS2b, AGPS2a, APGS2b, OsAGPS2b, AGPP, GAS8, OsAPS2, OsAPS2a, OsAPS2b
42372	26607171	Yadav A.K., Shankar A., Jha S.K., Kanwar P., Pandey A., Pandey G.K.	A rice tonoplastic calcium exchanger, OsCCX2 mediates Ca(2+)/cation transport in yeast.	Sci Rep	5	17117	2015	CDT1	OsCDT1, OsCCX2, CCX2, OsNCX8, NCX8
42373	26578743	Zhu J., Liang J., Xu Z., Fan X., Zhou Q., Shen Q., Xu G.	Root aeration improves growth and nitrogen accumulation in rice seedlings under low nitrogen.	AoB Plants	7		2015	HTNE,PDCD5,AMT1;3,NRT2.1,PAD4,ACS5,LSD1,AMT1;2,EDS1,NAR2.1,AMT1;1	NRT2.3, OsNRT2.3, OsNRT2;1, OsNRT2.3a, OsNRT2.3b, OsNRT2;3a, OsNRT2.5 ,OsPDCD5,OsAMT1;3, AMT1-3, Osamt1-2, "OsAMT1,2", OsAMT1;2, OsAMT1.3, AMT1.2,OsNRT2.1, OsNRT2.2,OsPAD4,OsACS5, OS-ACS5, OsBphi008a,OsLSD1, OsLOL1, OsLSD1.1, LSD1.1,OsAMT1;2, AMT1-2, Osamt1-3, "OsAMT1,3", OsAMT1;3, OsAMT1.3, OsAMT1.2, AMT1.2,OsEDS1,OsNAR2.1, OsNRT3.1A,OsAMT1;1, OsAMT1:1, OsAMT1, AMT1-1, AMT1, OsAMT1p, OsAMT1-1, Osamt1-1, "OsAMT1,1", OsAMT1.1, AMT1.1, FCO12
42374	26486445	Wu S., Xie Y., Zhang J., Ren Y., Zhang X., Wang J., Guo X., Wu F., Sheng P., Wang J., Wu C., Wang H., Huang S., Wan J.	VLN2 Regulates Plant Architecture by Affecting Microfilament Dynamics and Polar Auxin Transport in Rice.	Plant Cell	27(10)	2829-45	2015	_,_,LRA1,_,_,_	VLN1, OsVLN1, Os VLN1,VLN2, OsVLN2, Os VLN2,OsPIN2, PIN2, OsLRA1, WAR1, OsWAR1,VLN3, OsVLN3, Os VLN3,VLN5, OsVLN5, Os VLN5,VLN4, OsVLN4, Os VLN4
42375	26434724	Zhou Y., Miao J., Gu H., Peng X., Leburu M., Yuan F., Gu H., Gao Y., Tao Y., Zhu J., Gong Z., Yi C., Gu M., Yang Z., Liang G.	Natural Variations in SLG7 Regulate grain shape in Rice.	Genetics	201(4)	1591-9	2015	_,_,GW7	,,GL7, OsGL7, OsGW7, qGW7, qGL7, SLG7, GL7/GW7/SLG7, qPY7, GL7/SLG7, Chalk7, OsChalk7
42376	26479032	Tao Y., Cheung L.S., Li S., Eom J.S., Chen L.Q., Xu Y., Perry K., Frommer W.B., Feng L.	Structure of a eukaryotic SWEET transporter in a homotrimeric complex.	Nature	527(7577)	259-63	2015	SWEET2B	OsSWEET2b, SWEET2b
42377	26486444	Farquharson K.L.	VILLIN2 Emerges as a Master Builder in Rice.	Plant Cell	27(10)	2675	2015	LRA1,_	OsPIN2, PIN2, OsLRA1, WAR1, OsWAR1,VLN2, OsVLN2, Os VLN2
42378	26519999	Srikanth B., Subhakara Rao I., Surekha K., Subrahmanyam D., Voleti S.R., Neeraja C.N.	Enhanced expression of OsSPL14 gene and its association with yield components in rice (Oryza sativa) under low nitrogen conditions.	Gene	576(1 Pt 3)	441-50	2016	WFP	OsSPL14, SPL14, IPA1, WFP/IPA1, OsSPL14/WFP/IPA1, OsIPA1,  IPA1/OsSPL14
42379	26428067	Zou X., Qin Z., Zhang C., Liu B., Liu J., Zhang C., Lin C., Li H., Zhao T.	Over-expression of an S-domain receptor-like kinase extracellular domain improves panicle architecture and grain yield in rice.	J. Exp. Bot.			2015	D35,GID2,LSK1,KO1	d35, d35(t), dwf30, OsKOL2, KOL2, KO2, OsKO2, OSKO2, KO, CYP701A, CYP701A6, Os KO2, OsKOL2/CYP701A,gid2, GF14e, OsGF14e, OsGID2, 14-3-3e,OsLSK1, SDRLK-LSK1, OsSDRLK-LSK1,OsKO1, OSKO1, OSKOL1, OsKOS4, CYP701A7
42380	26438231	Wei Y., Xu H., Diao L., Zhu Y., Xie H., Cai Q., Wu F., Wang Z., Zhang J., Xie H.	Protein repair l -isoaspartyl methyltransferase 1 (PIMT1) in rice improves seed longevity by preserving embryo vigor and viability.	Plant Mol. Biol.	89(4-5)	475-92	2015	PIMT2,PIMT1	OsPIMT2, OsPIMT2'-1, OsPIMT2'-2, deltaOsPIMT2,OsPIMT1, OsPIMT1'
42381	26505346	Chen H., Lan H., Huang P., Zhang Y., Yuan X., Huang X., Huang J., Zhang H.	Characterization of OsPM19L1 encoding an AWPM-19-like family protein that is dramatically induced by osmotic stress in rice.	Genet. Mol. Res.	14(4)	11994-2005	2015	RAB16A,_,BZIP46,RAB16D,RAB16B,EM,_,PM1,LEA17,_,_,LTP2	Rab16A, rab21, RAB21, OsRab21, OsRAB21, OsRAB-21, OsRab16A, OsLEA29, rab16A, OsRAB16A,,ABL1, bZIP46, OsABL1, OsbZIP46, OsAREB8, OsABF2, ABF2, OsABF3, ABF3, OsbZIP46CA1, OsZIP46, ZIP46, OsbZIP46/OsABF2,rab21, OsLEA26, Rab16D, OsRab16,rab21, OsLEA28, OsRAB16D, OsRab16d, Rab16d, OsRAB16b, XERO1, OsXERO1, OsRD22, RD22,Em*, EMP1, Emp1, EM, Em, OsEm, Osem, OsLEA21, OsEm1, Em1 ,OsPM19L2,AWPM-19, PM19, OsPM1, OsPM-1, OsPM19L1, PM19L1, OsAWPM-19, OsPM19,OsLEA17, OsLEA3-2, LEA3-2, LEA1,OsPM19L4,OsPM19L3,nsLTP2, OsnsLTP2, OsLTP2.3, Ltp2, OsLTP2, RLTP2, OsLtpII.3
42382	26503287	Li Y., Yuan F., Wen Z., Li Y., Wang F., Zhu T., Zhuo W., Jin X., Wang Y., Zhao H., Pei Z.M., Han S.	Genome-wide survey and expression analysis of the OSCA gene family in rice.	BMC Plant Biol.	15	261	2015	OSCA1.3,OSCA1.1,OSCA4.1,OSCA2.5,OSCA1.2,OSCA2.2,OSCA2.4,OSCA2.3,ERD4,OSCA2.1,OSCA1.4	OsSTA149, OsOSCA1.3, OsIOSCA1.3, OsDDP5, DDP5, OsDDP5.1,OsOSCA1.1, OsIOSCA1.1, OsDDP1, DDP1, OsDDP1.1, OsDDP1.2, OsDDP1.3, OsDDP1.4,OsOSCA4.1, OsIOSCA4.1,OsEnS-22, OsOSCA2.5, OsIOSCA2.5, OsDDP2, DDP2, OsDDP2.1, OsDDP2.2, OsERD, ERD,OsOSCA1.2, OsIOSCA1.2, OsDDP6, DDP6, OsDDP6.1, OsDDP6.2,OsOSCA2.2, OsIOSCA2.2, OsDDP3, DDP3, OsDDP3.1, OsDDP3.2,OsOSCA2.4, OsIOSCA2.4, OsDDP9, DDP9, OsDDP9.1,OsOSCA2.3, OsIOSCA2.3, OsDDP4, DDP4, OsDDP4.1,OsOSCA3.1, OSCA3.1, OsIOSCA3.1, OsERD4, OsDDP7, DDP7, OsDDP7.1, OsDDP7.2,OsOSCA2.1, OsIOSCA2.1, OsDDP10, DDP10, OsDDP10.1,OsOSCA1.4 , OsIOSCA1.4, OsDDP8, DDP8, OsDDP8.1, OsDDP8.2
42383	26473514	Schilling S., Gramzow L., Lobbes D., Kirbis A., Weilandt L., Hoffmeier A., Junker A., Weigelt-Fischer K., Klukas C., Wu F., Meng Z., Altmann T., Thei?en G.	Non-canonical structure, function and phylogeny of the Bsister MADS-box gene OsMADS30 of rice (Oryza sativa).	Plant J.			2015	FST ,MADS30,MADS31	OsMADS29, MADS29, OsFST,OsMADS30,OsMADS31
42384	26537047	Su L., Shan J.X., Gao J.P., Lin H.X.	OsHAL3, a Blue Light responsive Protein, Interacts with the Floral Regulator Hd1 to Activate Flowering in Rice.	Mol Plant			2015	_,RAP1B,HD3A,SE1	OsHAL3, HAL3,MADS14, OsMADS14, FDRMADS6, RMADS211, AGL10,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, OsHd1,  Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21
42385	26443376	Sakuraba Y., Piao W., Lim J.H., Han S.H., Kim Y.S., An G., Paek N.C.	Rice ONAC106 Inhibits leaf senescence and Increases Salt Tolerance and tiller angle.	Plant Cell Physiol.	56(12)	2325-39	2015	LEA3-1,DREB2A,NAC5,NAC106,BZIP23,SGR,NYC1,EIL1,NAC58,LPA1,S3H	OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3, OsLEA3A, LEA3A,OsDREB2A, OsDREB2a, ERF40, OsERF#040, OsERF040, OsERF40, AP2/EREBP#167, AP2/EREBP167,OsNAC5, NAC71, ONAC071, ONAC009, ONAC9, ONAC020, ONAC20, OnNAC5*, OnNAC5, OsNAC5/ONAC009,ONAC106,OsbZIP23, OsAREB1, OsABF2, Osbzip23, OsAREB2, OsZIP23, ZIP23,sgr(t), sgr, OsSGR, OsSgr, SGR1, OsSGR1,nyc1, OsNYC1,OsEIL1, EIN3, OsEIN3, MHZ6, OsEIL1a, EIL1a, OsEIL1b, EIL1b,OsNAP, NAP, ONAC058, ONAC58, Os PS1, PS1, OsCTb1, CTb1,OsIDD14, LPA1, IDD14, OsLPA1, ZOS1-06, OsZOS1-06,OsS3H, 2-ODD1, Os2-ODD1, 2ODD1, Os2ODD1, OsSAH3, SAH3, OsS3H/OsSAH3, OsS5H1, S5H1
42386	26485146	Ueno Y., Yoshida R., Kishi-Kaboshi M., Matsushita A., Jiang C.J., Goto S., Takahashi A., Hirochika H., Takatsuji H.	Abiotic Stresses Antagonize the Rice Defence Pathway through the Tyrosine-Dephosphorylation of OsMPK6.	PLoS Pathog.	11(10)	e1005231	2015	WRKY45,MKK10-2,_,DSG1,_	OsWRKY45, OsWRKY45-1, OsWRKY45-2, WRKY45-1, WRKY45-2,OsMKK10-2, MKK10-2D, OsMPKK10-2, MPKK10-2, OsMKK10.2, MKK10.2, OsMPKK10-2D, MPKK10-2D, MPKK10.2, OsMAPKK10-2, MAPKK10-2, OsMEK3. MEK3,OsPP127, OsPTP1, PTP1,OsMAPK6, MAPK6, OsMPK6, OsSIPK, SIPK, OsMAPK1, MAPK1, MPK1, OsMPK1, MPK6, OsDSG1,OsPTP2, PTP2
42387	26491145	Li C., Shen H., Wang T., Wang X.	ABA Regulates Subcellular Redistribution of OsABI-LIKE2, a Negative Regulator in ABA Signaling, to Control Root Architecture and Drought Resistance in Oryza sativa.	Plant Cell Physiol.	56(12)	2396-408	2015	SAPK10,PP2C6,PP2C53,SAPK8,PYL/RCAR10,PP2C50	OsSAPK10, OsSnRK2.10, SnRK2.10,OsPP2C06/OsABI2, OsPP2C06, OsPP2C6, OsABI2, OsPP10, ABI2, OsABIL1, ABIL1,OsPP2C53, OsPP81, OsABIL2, ABIL2,OsSAPK8, OsSnRK2.8, SnRK2.8,OsPYL/RCAR10, PYL10, OsPYL10, OsPYL1, PYL1, R10, OsPYL/R10,OsPP2C50, OsPP78, OsABIL3, ABIL3
42388	26706074	Gan L., Wu H., Wu D., Zhang Z., Guo Z., Yang N., Xia K., Zhou X., Oh K., Matsuoka M., Ng D., Zhu C.	Methyl jasmonate inhibits lamina joint inclination by repressing brassinosteroid biosynthesis and signaling in rice.	Plant Sci.	241	238-45	2015	BRD1,ARF1,D61,XTH2,BZR1,D11,D2,XTH9,BU1	brd1, OsDWARF, DWARF, OsBR6ox, BR6ox, CYP85A1, CYP85A4, OsDWF, CYP85A1/OsDWARF, OsBRD1, OsCYP85A1,OsARF1, arf1, OsARF23, ARF23,d61*, dwf42, d61, OsBRI1, OSBRI1, BRI1, Os BRI1, Osbri1, OsBRKq1, BRKq1,OsXTH2, XTR1, OsXTR1,OsBZR1, Os BZR1, OsBES1-6, BES1-6,d11(d8), dwf10, d8, D11/CYP724B1, d11, CYP724B1, GNS4, OsD11, PMM1, OsPMM1, PMM1/D11, NBG4, OsCPB1, CPB1, CPB1/D11,d2, dwf2, CYP90D2, D2/CYP90D2, OsD2, SMG11, OsSMG11, D2/SMG11, OsD2a, OsD2b,OsXTH9, OsXET9, XTH1, OsXTH1,ILI4, OsILI4 , OsBU1, BU1/ILI4, OsbHLH172, bHLH172
42389	26706071	Lee D.K., Kim H.I., Jang G., Chung P.J., Jeong J.S., Kim Y.S., Bang S.W., Jung H., Choi Y.D., Kim J.K.	The NF-YA transcription factor OsNF-YA7 confers drought stress tolerance of rice in an abscisic acid independent manner.	Plant Sci.	241	199-210	2015	HAP2G,IGPS,HAP2F,NDA2,HAP2A,HAP2C,HAP2B,HAP2D,HAP2I,_,ENODL18,HAP2E,HAP2H,_,_,_,_,GR2,_,_,NRAMP6,_,_,_,FTSH6,_,_,ABCG17,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,RAB16C,NEF1,HAC1;2,WRKY62,BHLH10,GRG,UGE1,RBBI2-1,HAP2J,_,BPH33,MRLK46,ESG1,DREB1C,_	OsHAP2G, NF-YA, CBF-B, NF-YA6, OsNF-YA6, NFYA6,OsIGPS, TRPC, OsTRPC,OsHAP2F, NF-YA, CBF-B, NF-YA10, OsNF-YA10, NFYA10,OsNDA2,OsHAP2A, NF-YA, CBF-B, NF-YA7, OsNF-YA7, NFYA7,OsHAP2C, NF-YA, CBF-B, NF-YA1, OsNF-YA1, NFYA1,OsHAP2B, NF-YA, CBF-B, NF-YA9, OsNF-YA9, NFYA9,OsHAP2D, NF-YA, CBF-B, NF-YA4, OsNF-YA4, NFYA4,OsHAP2I, NF-YA, CBF-B, NF-YA8, OsNF-YA8, OsEnS-136, NFYA8,,OsENODL18, OsELA3, ELA3, EN20, OsEN20,OsHAP2E, NF-YA, CBF-B, NF-YA2, OsNF-YA2, NFYA2,OsHAP2H, NF-YA, CBF-B, NF-YA3, OsNF-YA3, NFYA3,,,,,OsGR2, RGRC2, OsGR, OsGR3, OsRGRC2,GPAT,,OsNRAMP6, Nramp6, l-NRAMP6, s-NRAMP6, OsNramp6.8, OsNramp1,,,,OsFtsH6, FtsH6,Os_F0757,,OsABCG17,,,,,,,,,,,,,,,,rab21, OsLEA27, rab16C, OsRAB16C, DHD,Os NEF1, OsNEF1,OsStr6, STR6, OsRhST, RLD, OsHAC1;2,OsWRKY62, OsWRKY62.1, OsWRKY62.2, XB10, OsWRKY62-1, OsWRKY62-2,OsICE1, ICE1, OsbHLH010, bHLH010, OsMYL1, MYL1, bHLH116, OsMYC3, MYC3 ,OsGRG,OsUGE1, OsUGE-1, UGE-1,RBBI2-1, OsBBTI2, BBTI2,OsHAP2J, NF-YA, CBF-B, NF-YA5, OsNF-YA5, NFYA5,,OsDjC10, DjC10, Bph33(t), Bph33,SHR5, OsMRLK46,ABCI10, OsABCI10, OsABCI10_1, OsABCI10_2, OsESG1,OsDREB1C, CBF1, ERF26, OsERF026, OsERF#026, OsERF26, AP2/EREBP#098, AP2/EREBP98, OsCBF2, CBF2,
42390	26507552	Dixit S., Kumar Biswal A., Min A., Henry A., Oane R.H., Raorane M.L., Longkumer T., Pabuayon I.M., Mutte S.K., Vardarajan A.R., Miro B., Govindan G., Albano-Enriquez B., Pueffeld M., Sreenivasulu N., Slamet-Loedin I., Sundarvelpandian K., Tsai Y.C., Raghuvanshi S., Hsing Y.I., Kumar A., Kohli A.	Action of multiple intra-QTL genes concerted around a co-localized transcription factor underpins a large effect QTL.	Sci Rep	5	15183	2015	SWEET13,NAC139,CRL4,GDA1,GDPD,_,WAK125,_,ARF24,_,_,CESA10	OsSWEET13, Xa25(t), Xa25, OsMtN3, Xa25/SWEET13, OsSWEET13/XA25,ONAC139, OsNAM,CHARK, S/T kinase, OsCRL4, OsHKL1, OsCDP,OsAH, AH, OsGDA1,OsGdpD, GdpD, OsGDPDL4, GDPDL4, OsGL4, GL4,OsPOEI19, POEI19,OsWAK125, OsRLCK368, RLCK368, OsWAK-RLP,OsAFC2, AFC2, OsDR11, DR11, OsDR11L, OsDR11S,OsARF24,OsEnS-150, OsDR, DR,OsABA45, ABA45, OsGDP, GDP, OsASR, ASR,OsCesA10, OsCESA10
42391	26453745	Yoon D.H., Lee S.S., Park H.J., Lyu J.I., Chong W.S., Liu J.R., Kim B.G., Ahn J.C., Cho H.S.	Overexpression of OsCYP19-4 increases tolerance to cold stress and enhances grain yield in rice (Oryza sativa).	J. Exp. Bot.	67(1)	69-82	2016	CYP20-1,CYP19-4	OsCYP20-1, OsCYP-17, OsCYP20-1a, OsCYP20-1b,OsCYP19-4, OsCYP-16, OsCYP19-3, OsCYP19-4.1, OsCYP19-4.2, OsCYP19-4.3, OsCYP19-4.4, OsCYP19-4.5, OsCYP19-4.6, OsCYP19-4.7, OsCYP19-4.8
42392	26526688	Mohanta T.K., Mohanta N., Parida P., Bae H.	Mitogen Activated Protein Kinase (MPK) Interacts With Auxin Influx Carrier (OsAux/LAX1) Involved in Auxin Signaling in Plant.	Biol Proced Online	17	13	2015	MPK6,DSG1,_,MSRMK2	OsMPK6, OsDR6, DR6, OsMPK4, MPK4, OsMAPK4, MAPK4,OsMAPK6, MAPK6, OsMPK6, OsSIPK, SIPK, OsMAPK1, MAPK1, MPK1, OsMPK1, MPK6, OsDSG1,OsATL11, OsAux/LAX1, OSLAX1,OsMSRMK2, OsMAPK5, OsMAP1, OsMPK3, OsBIMK1, OsMAPK2, MPK5, BIMK1, MAPK2, MAPK5, MPK3, OsMPK5, OsMAPK3, OsMAPK5b, MAPK3
42393	26480952	Ma L., Li T., Hao C., Wang Y., Chen X., Zhang X.	TaGS5-3A, a grain size gene selected during wheat improvement for larger kernel and yield.	Plant Biotechnol. J.			2015		
42394	26435218	Qiu C.H., Li H., Li J., Qin R.Y., Xu R.F., Yang Y.C., Ma H., Song F.S., Li L., Wei P.C., Yang J.B.	Isolation and characterization of three cadmium-inducible promoters from Oryza sativa.	J. Biotechnol.	216	11-9	2015	HSP18.0,GSTU5,GSTU37	OsHSP18.0-CI, HSP18.0-CI, OsHsp18.0, OsHSP18.0, Oshsp18.0, OsSHSP1, SHSP1, OsMSR3, MSR3, OsHSP20, HSP20, OsHSP18.6, HSP18.6,OsGSTU5,OsGSTU37
42395	26507364	Shang X.L., Xie R.R., Tian H., Wang Q.L., Guo F.Q.	A putative zeatin O-glucosyltransferase OscZOG1 regulates root and shoot development and formation of agronomic traits in rice.	J Integr Plant Biol			2015	_	OscZOG1, cZOG1
42396	26466818	Qi J., Li J., Han X., Li R., Wu J., Yu H., Hu L., Xiao Y., Lu J., Lou Y.	Jasmonic acid carboxyl methyltransferase regulates development and herbivory-induced defense response in rice.	J Integr Plant Biol			2015	JMT1	OsJMT1, JAMT1, OsJAMT1
42397	26482477	Duan Y.B., Li J., Qin R.Y., Xu R.F., Li H., Yang Y.C., Ma H., Li L., Wei P.C., Yang J.B.	Identification of a regulatory element responsible for salt induction of rice OsRAV2 through ex situ and in situ promoter analysis.	Plant Mol. Biol.			2015	ERF106,AP2/EREBP96,AP2/EREBP129,AP2/EREBP77,AP2/EREBP127	DERF7, OsDERF7, OsERF#106, OsERF106, AP2/EREBP#111, AP2/EREBP111, OsERF106MZ, ERF106MZ,AP2/EREBP#096, OsRAV12, RAV12, OsEREBP96, EREBP96,AP2/EREBP#129, OsRAV2, RAV2, OsRAV9/OsTEM1, OsRAV9/OsTEM1, OsRAV9, OsTEM1, RAV9, TEM1,AP2/EREBP#077, OsRAV1, RAV1, OsRAV8, RAV8,AP2/EREBP#127, OsRAV11, RAV11, OsRAV1, RAV1
42398	26483819	Gui J., Zheng S., Shen J., Li L.	Grain setting defect1 (GSD1) function in rice depends on S-acylation and interacts with actin 1 (OsACT1) at its C-terminal.	Front Plant Sci	6	804	2015	REM5.1,REM4.2,REM1.3,REM1.4,REM5.2,REM6.4,REM1.5,REM4.3,REM4.1,REM0.2,REM0.1,LP1,ACT1,REM6.3,GSD1,REM6.2,REM1.1,REM1.2,REM6.5,REM6.1	OsREM5.1,OsREM4.2,OsREM1.3,OsREM1.4,OsREM5.2,OsREM6.4,OsREM1.5,OsREM4.3,OsREM4.1,OsREM0.2,OsREM0.1,OsREM5.3, REM5.3, OsLP1,act1, AC1, RAC1, RAc1, ACT11, OsACT1,OsREM6.3,OsREM6.6, REM6.6, OsGSD1,OsREM6.2,OsREM1.1,OsREM1.2,OsREM6.5,OsREM6.1
42399	26483814	Lee S.S., Park H.J., Jung W.Y., Lee A., Yoon D.H., You Y.N., Kim H.S., Kim B.G., Ahn J.C., Cho H.S.	OsCYP21-4, a novel Golgi-resident cyclophilin, increases oxidative stress tolerance in rice.	Front Plant Sci	6	797	2015	CYP21-4	OsCYP21-4, OsCYP-19, OsCYP21-2a, OsCYP21-2b, OsCYP21-2c
42400	26398804	Wang X., Zhou W., Lu Z., Ouyang Y., O CS., Yao J.	A lipid transfer protein, OsLTPL36, is essential for seed development and seed quality in rice.	Plant Sci.	239	200-8	2015	_	OsLTPL36, LTPL36
42401	26706069	Schmitz A.J., Begcy K., Sarath G., Walia H.	Rice Ovate Family Protein 2 (OFP2) alters hormonal homeostasis and vasculature development.	Plant Sci.	241	177-88	2015	KNAT7,LOGL5,_,SLC1,C4H2,_,LOG1,WAHD1,BIHD1,_,OFP2	HOS66, HB365, OsKNAT7,OsLOGL5,OsMYB42/85, MYB42/85, OsMYB85, MYB85, Os2R_MYB85, 2R_MYB85 ,OsSLC1, GA20OX7, OsGA20ox7, ga20ox7, 2-ODD4, Os2-ODD4, 2ODD4, Os2ODD4,OsC4H, OsC4HL, C4H, OsC4H2,CCR1, OsCCR1, OsCCR14, CCR14 ,OsLOG1, LOG, Log, log, OsLOG,OsWAHD1,OsBIHD1,OsPAL07, OsPAL, PAL07, OsPAL6, PAL6, PAL1, OsPAL7, PAL7,OsOFP2, OsOFP03
42402	26481009	Sun S.J., Qi G.N., Gao Q.F., Wang H.Q., Yao F.Y., Hussain J., Wang Y.F.	Protein kinase OsSAPK8 functions as an essential activator of S-type anion channel OsSLAC1, which is nitrate-selective in rice.	Planta			2015	SAPK8,SLAC1	OsSAPK8, OsSnRK2.8, SnRK2.8,OsSLAC1, OsSLAH1, SLAH1
42403	26426417	Hutin M., Sabot F., Ghesqui?re A., Koebnik R., Szurek B.	A knowledge-based molecular screen uncovers a broad spectrum OsSWEET14 resistance allele to bacterial blight from wild rice.	Plant J.			2015	XA41	OsSWEET14, SWEET14, Os11N3, Os-11N3, 11N3, Xa41(t), xa41, Os11N3/SWEET14, OsSWEET14/Os11N3
42404	26340989		Correction for Liu et al., Activation of Big Grain1 significantly improves grain size by regulating auxin transport in rice.	Proc. Natl. Acad. Sci. U.S.A.	112(39)	E5446	2015		
42405	26347131	Li X.C., Liao Y.Y., Leung D.W., Wang H.Y., Chen B.L., Peng X.X., Liu E.E.	Divergent biochemical and enzymatic properties of oxalate oxidase isoforms encoded by four similar genes in rice.	Phytochemistry	118	216-23	2015	OXO4,OXO1,OXO3,OXO2	OsOxO4, OsGLP3-6, GLP3-6, OsCDP3.9, CDP3.9,OsOxO1, OsGLP3-3, GLP3-3, OsCDP3.6, CDP3.6,OsOxO3, OsGLP3-5, GLP3-5, OsCDP3.8, CDP3.8,Osoxo4, OsOxO2, OsGLP3-4, GLP3-4, OsCDP3.7, CDP3.7
42406	26358652	Xie W., Wang G., Yuan M., Yao W., Lyu K., Zhao H., Yang M., Li P., Zhang X., Yuan J., Wang Q., Liu F., Dong H., Zhang L., Li X., Meng X., Zhang W., Xiong L., He Y., Wang S., Yu S., Xu C., Luo J., Li X., Xiao J., Lian X., Zhang Q.	Breeding signatures of rice improvement revealed by a genomic variation map from a large germplasm collection.	Proc. Natl. Acad. Sci. U.S.A.	112(39)	E5411-9	2015		
42407	26362607	Oikawa T., Maeda H., Oguchi T., Yamaguchi T., Tanabe N., Ebana K., Yano M., Ebitani T., Izawa T.	The Birth of a Black Rice Gene and Its Local Spread by Introgression.	Plant Cell	27(9)	2401-14	2015	F3H3,PKS8,F3H2,RD,F3H1,B2,F3'H,ANS,LSC6,LAR,CHS	OsF3H-3, F3H-3, OsF3H3, OsF3H4, F3H4,OsCHS2, CHS2, OsPKS08, OsPKS8, PKS08, OsCHS8, CHS8,OsF3H-2, F3H-2, OsF3H2, FNS1, OsFNS1, OsSAH4, SAH4, OsF3H8, F3H8,Rd, DFR, OsDFR, OS-DFR, OsDFR1, DFR1, DFR-1,OsF3H-1, F3H-1, OsF3H1, OsF3H, F3H, OsF3H3, F3H3,OsbHLH016, Kala4, OsKala4, OSB2, OsB2,OsF3'H, OsCYP75B3, CYP75B3, OsF3'H10, F3'H10, OsCYP71P3, CYP71P3,ANS, OsANS1, ANS1, LDOX, LDOX1, OsLDOX, OsLDOX1,UGT, OsUFGT/Os3GT, OsUF3GT, OsUFGT, UFGT, OsLSC6, UF3GT,OsLAR,CHS*, Oschs, chs, chas, OsCHS, OsCHS1, CHS1, OsPKS26, PKS26, OsCHS24, CHS24, OsCHS27, CHS27
42408	26423116	Chinpongpanich A., Phean-o-pas S., Thongchuang M., Qu L.J., Buaboocha T.	C-terminal extension of calmodulin-like 3 protein from Oryza sativa L.: interaction with a high mobility group target protein.	Acta Biochim. Biophys. Sin. (Shanghai)	47(11)	880-9	2015	HMGB1,CML3	OsHMGB1, OsMNB1B, MNB1B,OsCML3, OsSTA271, OsCML3m, OsCML3s
42409	26381316	Louren?o TF., Serra T.S., Cordeiro A.M., Swanson S.J., Gilroy S., Saibo N.J., Oliveira M.M.	The Rice E3-Ubiquitin ligase HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENE1 Modulates the Expression of ROOT MEANDER CURLING, a Gene Involved in Root Mechanosensing, through the Interaction with Two ETHYLENE-RESPONSE FACTOR Transcription Factors.	Plant Physiol.	169(3)	2275-87	2015	EREBP1,ERF99,_,RMC	OsEREBP1, OsERF#070, OsERF070, OsERF70, ERF70, AP2/EREBP#084, AP2/EREBP84,OsERF#099, OsERF099, OsERF99, AP2/EREBP#080, AP2/EREBP80, OsEREBP2, EREBP2,OsHOS1, HOS1,OsRMC, OsRLK, OsDUF26, DUF26, OsCBMIP, CBMIP, NCS, OsNCS, OsCRK5, CRK5
42410	26424158	Khong G.N., Pati P.K., Richaud F., Parizot B., Bidzinski P., Mai C.D., B?s M., Bourri? I., Meynard D., Beeckman T., Selvaraj M.G., Manabu I., Genga A.M., Brugidou C., Nang Do V., Guiderdoni E., Morel J.B., Gantet P.	OsMADS26 Negatively Regulates Resistance to Pathogens and Drought Tolerance in Rice.	Plant Physiol.	169(4)	2935-49	2015	POX22.3,WRKY28,MADS26,_,CHT3,NH1	POX22.3, OSPER, OsPOX, POX, Pir3, prx111, POX22, OsPOX1, POX1, OsPOX22.3, OsPR9, PR9,OsWRKY28, DLN170, OsDLN170,OsMADS26, FDRMADS3, RMADS220,PR5,Cht3*, Cht3, Cht-3, CH6, OsChia1c, CHI7, OsCHI11, CHI11, OsPR3, PR3,OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2, DLN5, OsDLN5,  OsBTBA1, BTBA1
42411	26358044	Lim S.D., Jung C.G., Park Y.C., Lee S.C., Lee C., Lim C.W., Kim D.S., Jang C.S.	Molecular dissection of a rice microtubule-associated RING finger protein and its potential role in salt tolerance in Arabidopsis.	Plant Mol. Biol.	89(4-5)	365-84	2015	_,RLCK305,CPA1,O3,FKBP12,EDA16,RMT1,SALT,_	OsPB1, PB1,OsPUB53, PUB53, OsRLCK305, OsMed2_1, Med2_1 ,  OsPUB53, PUB53,OsCPA1,OsbZIP60, bZIP60,OsFKBP12,BRHIS1, Os BRHIS1, OsEDA16, CHR725, OsCHR725,  OsRING433, RING433,OsRMT1,  OsRING362, RING362,salT*(sal1), SalT1*, sal1, Sal1, SALT, ML, SalT, OsSalT, OsJRL, JRL, Osl43, OsL43, OsMBL1, MBL1, OsJRL01, JRL01, OsJRL1, JRL1,OsDH1, DH1
42412	26337938	Zhang Y., Verhoeff N.I., Chen Z., Chen S., Wang M., Zhu Z., Ouwerkerk P.B.	Functions of OsDof25 in regulation of OsC4PPDK.	Plant Mol. Biol.	89(3)	229-42	2015	DOF5,DOF4,DOF21,DOF14,DOF22,RDD4,DOF7,SP3,DOF13,RDD1,_,RPBF,RDD3,DOF27,DOF30,DOF28,DOF11,DOF25,DOF29,DOF19,DOF17,DOF16,_,DOF2,RDD2,DOF3,DOF24,DOF18,DOF20,_	OsDof5, OsDof6, Dof6, OsDof-6, DOF6,OsDof4, OsDof8, Dof8, OsDof-8, DOF8, OsDof10, Dof10,OsDof21, Dof21, OsDof-21, OsCDF2, CDF2, OsDof22, Dof22,OsDof14, Dof14, OsDof-14, OsDof12, Dof12,OsDof22, Dof22, OsDof-22, OsDof23, Dof23,OsDof12, Dof12, OsDof-12, OsCDF1, OsCDF1/OsDOF12, OsDOF12, CDF1, DOF12, OsDof11, Dof11,OsDof7, Dof7, OsDof-7, OsDOF11, DOF11, OsDof9, Dof9,OsDof15, Dof15, OsDof-15, DOF15,OsDof13, Dof13, OsDof-13, OsDof14, Dof14,OsDof2, OsDof9, Dof9, OsDof-9, DLN64, OsDLN64, OsDof8, Dof8,OsDof1, Dof1, OsDof-1, OsDof6, Dof6,OsDof3, OsDOF3, OsEnS-34, OsDof10, Dof10, OsDof-10, OsDOF1, DOF1, DOF3, OsRPBF, OsDOF7,OsDof26, Dof26, OsDof-26, OsDof27, Dof27,OsDof27, Dof27, OsDof-27, OsDof28, Dof28,OsDof30, Dof30, OsDof-30 ,OsDof28, Dof28, OsDof-28, OsDof29, Dof29,OsDof11, Dof11, OsDof-11, OsDof13, Dof13,OsDof25, Dof25, OsDof-25, OsDof26, Dof26,OsDof29, Dof29, OsDof-29, OsDof20, Dof20, CRPG562, OsCRPG562,OsDof19, Dof19, OsDof-19 ,OsDof17, Dof17, OsDof-17, OsDof18, Dof18,OsDof16, Dof16, OsDof-16,OsDof5, Dof5, OsDof-5, OsDof4, Dof4,OsDof, OsDof2, Dof2, OsDof-2,OsDof23, Dof23, OsDof-23, OsDof1, OsCDF3, CDF3, OsDof24, Dof24,OsDof3, Dof3, OsDof-3, OsDof1,OsDof24, Dof24, OsDof-24, OsDof25, Dof25,OsDof18, Dof18, OsDof-18, DLN119, OsDLN119, OsDof17, Dof17,OsDof20, Dof20, OsDof-20, OsDof21, Dof21,OsDof4, Dof4, OsDof-4, Dof-4, OsDof3, Dof3
42413	26408146	Joshi R., Karan R., Singla-Pareek SL., Pareek A.	Ectopic expression of Pokkali Phosphoglycerate kinase-2 (OsPgk2-P) improves yield in tobacco plants under salinity stress.	Plant Cell Rep.			2015	PGK3,PGK1,PGK2,PGK4	OsPGK3, OsPGK3a, OsPGK3b, OsPGK3c,OsPGK1,OsPGK2, OsPGK2a, OsPGK2b, OsPGK2c, PKP ,PGK, OsPGK4
42414	26186703	Fujisaki K., Abe Y., Ito A., Saitoh H., Yoshida K., Kanzaki H., Kanzaki E., Utsushi H., Yamashita T., Kamoun S., Terauchi R.	Rice Exo70 interacts with a fungal effector, AVR-Pii, and is required for AVR-Pii-triggered immunity.	Plant J.	83(5)	875-87	2015	_,EXO70F2,PI3,EXO70F3,PI5-2	Pii,OsEXO70F2, OsExo70F2, OrysaF2_Exo70, OsExo70-F2, Exo70-F2,Pi3, Pi5, Pi-3(t), Pi-3, Pi3(t), Pi5(t), Pi5-1, Pii,  RMg22, RMg21,OsEXO70F3, OsExo70F3, OrysaF3_Exo70, OsExo70-F3, Exo70-F3,Pi3, Pi5, Pi-3(t), Pi-3, Pi3(t), Pi5(t), Pi5-2, Pii,  RMg22, RMg21
42415	26394329	Zhang B., Xu M., Bian S., Hou L., Tang D., Li Y., Gu M., Cheng Z., Yu H.	Global Identification of Genes Specific for Rice Meiosis.	PLoS ONE	10(9)	e0137399	2015	_,_,ATM,PSS1,_,PP47,CDC20.1,SYP121,CAT4,_,PP2A-A,ZIP4,_,ORC4,AM1,_,_,_,_,GID2,AP2/EREBP85,SNDP5,_,_,HEI10,_,_,MSH5,ATR,MSRMK2,CDC45-1,_,_,MSH3,CDC2-1	sudA,RAD23,OsATM,pss1, OsPSS1,OsPP44, PP44,OsPP47, OsTOPP4, TOPP4,OsWD40-51, OsCDC20.1, WD40-51, CDC20.1, CDC20.2, OsCDC20.2,  OsCDC20-3, CDC20-3, OsCDC20A, CDC20A,OsSYP121,OsCAT4,OsEXO1, OsExo1, EXO1,PP2A-A, RPA1,OsZIP4, SPO22, OsSPO22,OsRPA14, RPA14, RPA3,OsORC4,OsAM1, SWI1, Osam1,,APC5, OsAPC5,APC7, OsAPC7,APC10 ,gid2, GF14e, OsGF14e, OsGID2, 14-3-3e,AP2/EREBP#085, DRD1, OsDRD1, CHR730, OsCHR730,OsSNDP5, OsSec14-2, Sec14-2,OSK21,CAK1, MAT1, OsCAK1, OsMAT1, CDKA1, OsCDKA1,HEI10A, HEI10B, OsHEI10,  OsRING434, RING434,,,OsMSH5,OsATR,OsMSRMK2, OsMAPK5, OsMAP1, OsMPK3, OsBIMK1, OsMAPK2, MPK5, BIMK1, MAPK2, MAPK5, MPK3, OsMPK5, OsMAPK3, OsMAPK5b, MAPK3,CDC45, OsCDC45, CDC45A,,OsPP56, PP56, OsPP2Ac-2, PP2Ac-2,OsMSH3,cdc2Os-1, CDC2Os-1, CDKA-1, CDKA;1, Orysa;CDKA;1, OsCDKA;1, cdc2Os1, Rcdc2-1, OsCDKA1, CDKA1, CDC20S-1, OsCDC20S-1 
42416	26359114	Li J., Xiang C.Y., Yang J., Chen J.P., Zhang H.M.	Interaction of HSP20 with a viral RdRp changes its sub-cellular localization and distribution pattern in plants.	Sci Rep	5	14016	2015	HSP18.0	OsHSP18.0-CI, HSP18.0-CI, OsHsp18.0, OsHSP18.0, Oshsp18.0, OsSHSP1, SHSP1, OsMSR3, MSR3, OsHSP20, HSP20, OsHSP18.6, HSP18.6
42417	26362328	Tian X., Wang Z., Li X., Lv T., Liu H., Wang L., Niu H., Bu Q.	Characterization and Functional Analysis of Pyrabactin Resistance-Like Abscisic Acid Receptor Family in Rice.	Rice (N Y)	8(1)	28	2015	PYL/RCAR7,RAB16A,LEA3-1,PYL/RCAR13,PYL/RCAR3,_,PYL/RCAR5,ABI1,PYL/RCAR9,PYL/RCAR6,PP2C53,PP2C8,PYL/RCAR8,PP2C30,PYL/RCAR10,PYL/RCAR11,PYL/RCAR7,PYL/RCAR13,PP2C1,PYL/RCAR4,PYL/RCAR2	OsPYL/RCAR7, PYL7, OsPYL7, OsPYL8, PYL8, OsEnS-90, RCAR1, OsRCAR1,Rab16A, rab21, RAB21, OsRab21, OsRAB21, OsRAB-21, OsRab16A, OsLEA29, rab16A, OsRAB16A,OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3, OsLEA3A, LEA3A,OsPYL/RCAR1, PYL1, OsPYL1, OsPYL4, PYL4,OsPYL/RCAR3, PYL3, OsPYL3, OsPYL10, PYL10, OsRCAR1, RCAR1 ,OsABA45, ABA45, OsGDP, GDP, OsASR, ASR,OsPYL/RCAR5, PYL5, OsPYL5, OsPYL11, PYL11,OsPP2C51, PP2C51, OsPP79, PP79, OsABI1,OsPYL/RCAR9, PYL9, OsPYL9, OsPYL2, PYL2,OsPYL/RCAR6, PYL6, OsPYL6, OsPYL5, PYL5,OsPP2C53, OsPP81, OsABIL2, ABIL2,OsPP2C08, PP2C08, OsPP2C8, OsPP12,OsPYL/RCAR8, PYL8, OsPYL8, OsPYL9, PYL9, CAPIP1,OsPP2C30, OsPP48, PP48,OsPYL/RCAR10, PYL10, OsPYL10, OsPYL1, PYL1, R10, OsPYL/R10,OsPYL/RCAR11, OsPYL12, PYL12, OsPYL11, PYL11,OsPYL/RCAR7, OsPYL7, PYL7, OsPYL12,OsEnS-89, OsPYL/RCAR13, OsPYL13, PYL13,OsPP2C1, OsSIPP2C1, SIPP2C1, OsPP2C68, PP2C68, OsPP108,OsPYL/RCAR4, PYL4, OsPYL4, OsPYL6, PYL6,OsPYL/RCAR2, PYL2, OsPYL2, OsPYL3, PYL3
42418	26442000	Nuruzzaman M., Sharoni A.M., Satoh K., Karim M.R., Harikrishna J.A., Shimizu T., Sasaya T., Omura T., Haque M.A., Hasan S.M., Ahmad A., Kikuchi S.	NAC transcription factor family genes are differentially expressed in rice during infections with Rice dwarf virus, Rice black-streaked dwarf virus, Rice grassy stunt virus, Rice ragged stunt virus, and Rice transitory yellowing virus.	Front Plant Sci	6	676	2015	BET1,NAC17,NAC10,NAC96,NAC85,NAC123,NAC55,NAC121,NAC131,ONAC300,NAC122,NAC103	BET1, ONAC081, ONAC81, NAC81,ONAC017, ONAC17, ONAC030, ONAC30, OsNAC111,ONAC010, ONAC10, OsSTA199, OsNAC3, NAC3,NAC94, ONAC096, ONAC96, NAC4, OsNAC4, OsNAC94,ONAC085, ONAC85,ONAC123, N77,ONAC055, ONAC55, CRPG64, OsCRPG64,ONAC121,ONAC131,ONAC077, NAC77, OsNAC77, NAC300, OsNAC300, ONAC132, NAC132, OsNAC132, DLN250, OsDLN250,OsNAC10, NAC10, ONAC122, NAC122, OsSNAC10, SNAC10,ONAC103, OsNAC103, OsNAC18 , NAC18
42419	26400148	Wang X., Zhang M.M., Wang Y.J., Gao Y.T., Li R., Wang G.F., Li W.Q., Liu W.T., Chen K.M.	The plasma membrane NADPH oxidase OsRbohA plays a crucial role in developmental regulation and drought-stress response in rice.	Physiol Plant			2015	_,_,_,_,_,GSTU19,RBOHA,RPK3,GSTU8,_,MTATPS1,RPBF,RLCK267,GSTU17	OsSLPP1, SLPP1 ,OsTPP1, TPP1 ,OsTPP2, TPP2,OsRPK2, RPK2,OsRPP14.1, RPP14.1,OsGSTU19, GSTU6, OsGSTU6, OsGSTU6.1, GSTU6.1,rbohA, OsrbohA, Os rbohA, OsRbohA, OsNox2, Nox2, OsRboh2, Rboh2,OsRPK3, OsMRLK63, MRLK63, OsCBM1, CBM1, OsMRLP15, MRLP15,OsGSTU8, OsGST35, GST35,OsRTPP1, RTPP1 ,OsmtATPS1, mtATPS1,OsDof3, OsDOF3, OsEnS-34, OsDof10, Dof10, OsDof-10, OsDOF1, DOF1, DOF3, OsRPBF, OsDOF7,OsRLCK267, OsRPK1, RPK1, OsMRLP15, MRLP15,OsGSTU17, OsGST23, GST23 
42420	26414948	Manuka R., Saddhe A.A., Kumar K.	Genome-wide identification and expression analysis of WNK kinase gene family in rice.	Comput Biol Chem	59 Pt A	56-66	2015	WNK4,WNK8,WNK2,WNK1,WNK3,WNK9,WNK5,WNK6,WNK7	OsWNK4,OsWNK8, STE20/MAPK3, STE20, MAPK3, OsSTE20, OsMAPK3,OsWNK2,OsWNK1,OsWNK3,OsWNK9,OsWNK5,OsWNK6,OsWNK7
42421	26401987	Rai A., Singh R., Shirke P.A., Tripathi R.D., Trivedi P.K., Chakrabarty D.	Expression of Rice CYP450-Like Gene (Os08g01480) in Arabidopsis Modulates Regulatory Network Leading to Heavy Metal and Other Abiotic Stress Tolerance.	PLoS ONE	10(9)	e0138574	2015	CYP71C4	OsCYP71C4
42422	26350069	Karmakar S., Molla K.A., Chanda P.K., Sarkar S.N., Datta S.K., Datta K.	Green tissue-specific co-expression of chitinase and oxalate oxidase 4 genes in rice for enhanced resistance against sheath blight.	Planta	243(1)	115-130	2016	PR1B,PAL1,PR10A,CHT3,OXO4,CHT1	OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1, OsPR1a, PR1a,OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,Cht3*, Cht3, Cht-3, CH6, OsChia1c, CHI7, OsCHI11, CHI11, OsPR3, PR3,OsOxO4, OsGLP3-6, GLP3-6, OsCDP3.9, CDP3.9,Cht1*(Chi1), Ch16, Cht1, CHT-1, CH16, RC24, OsChia1a, OsChia1, Chi1, Cht1*, Chi-1, Cht-1, Cht1, RCC1, OsCht-1, PR3, OsPR3
42423	26350403	Ye Y., Liu B., Zhao M., Wu K., Cheng W., Chen X., Liu Q., Liu Z., Fu X., Wu Y.	CEF1/OsMYB103L is involved in GA-mediated regulation of secondary wall biosynthesis in rice.	Plant Mol. Biol.	89(4-5)	385-401	2015	CESA7,BC6,MYB52,NAC62,BC7,CEF1,SLR1,_,BC1	OsCesA7, OsCESA7, OS_CESA07, OsCesA 7, CesA7,Bc6*, Bc6, OsCesA9, CESA9, OsCESA9, OS_CESA09, OsCesA 9, CesA9, BC88, SDBC1, OsSDBC1,OsMYB52, OsMYB52/54, Os2R_MYB41, 2R_MYB41,ONAC062, ONAC62, OsSND2, SND2,OsCesA4, OsCESA4, CESA4, OS_CESA04, BC11, bc7t, Bc7(t), bc-7, OsCesA 4, CesA4, FC17/CESA4, FC17, OsFC17,OsMYB103, OsMYB103L, CEF1/OsMYB103L, MYB103, MYB103L, OsMYB93, MYB93, OsFC9, FC9, Os2R_MYB74, 2R_MYB74,slr1-1, slr1, slr, GAI, OsGAI, OsSLR1, Os SLR1, OsRGA1, OsGRAS-18, OsGRAS-18, GRAS-18, GRAS18, SLR-1,OsMYB42/85, MYB42/85, OsMYB85, MYB85, Os2R_MYB85, 2R_MYB85 ,bc1, bc-1, OsBC1, CWA1, FP1, OsPCS3, PCS3
42424	26442027	Kaur H., Petla B.P., Kamble N.U., Singh A., Rao V., Salvi P., Ghosh S., Majee M.	Differentially expressed seed aging responsive heat shock protein OsHSP18.2 implicates in seed vigor, longevity and improves germination and seedling establishment under abiotic stress.	Front Plant Sci	6	713	2015	HSP18.0-CII	OsHSP18.0-CII, Oshsp18.0-CII, OsHSP18.0, OsHSP18.2
42425	26687131	Ruiz C., Pla M., Company N., Riudavets J., Nadal A.	High CO2 concentration as an inductor agent to drive production of recombinant phytotoxic antimicrobial peptides in plant biofactories.	Plant Mol. Biol.			2015		
42426	26689934	Biselli C., Bagnaresi P., Cavalluzzo D., Urso S., Desiderio F., Orasen G., Gianinetti A., Righettini F., Gennaro M., Perrini R., Ben Hassen M., Sacchi G.A., Cattivelli L., Val? G.	Deep sequencing transcriptional fingerprinting of rice kernels for dissecting grain quality traits.	BMC Genomics	16(1)	1091	2015		
42427	26713549	Wu T., Yang C., Ding B., Feng Z., Wang Q., He J., Tong J., Xiao L., Jiang L., Wan J.	Microarray-based gene expression analysis of strong seed dormancy in rice cv. N22 and less dormant mutant derivatives.	Plant Physiol. Biochem.	99	27-38	2015		
42428	26719746	Orn C., Shishido R., Akimoto M., Ishikawa R., Htun T.M., Nonomura K., Koide Y., Sarom M., Vang S., Sophany S., Makara O., Ishii T.	Evaluation of genetic variation among wild rice populations in Cambodia.	Breed. Sci.	65(5)	430-7	2015		
42429	26660729	Kanizay L., Jacobs T., Hancock C.N.	A transgenic, visual screenable marker for soybean seeds.	Transgenic Res.			2015		
42430	26639303	Liu B., Wei G., Shi J., Jin J., Shen T., Ni T., Shen W.H., Yu Y., Dong A.	SET DOMAIN GROUP 708, a histone H3 lysine 36-specific methyltransferase, controls flowering time in rice (Oryza sativa).	New Phytol.			2015		
42431	26643073	Yeh S.Y., Chen H.W., Ng C.Y., Lin C.Y., Tseng T.H., Li W.H., Ku M.S.	Down-Regulation of Cytokinin Oxidase 2 Expression Increases tiller number and Improves Rice Yield.	Rice (N Y)	8(1)	36	2015		
42432	26685666	Wang X., Cheng Z., Zhao Z., Gan L., Qin R., Zhou K., Ma W., Zhang B., Wang J., Zhai H., Wan J.	BRITTLE SHEATH1 encoding OsCYP96B4 is involved in secondary cell wall formation in rice.	Plant Cell Rep.			2015		
42433	26668331	Nishizawa-Yokoi A., Cermak T., Hoshino T., Sugimoto K., Saika H., Mori A., Osakabe K., Hamada M., Katayose Y., Starker C., Voytas D.F., Toki S.	A defect in DNA ligase 4 enhances the frequency of TALEN-mediated targeted mutagenesis in rice.	Plant Physiol.			2015		
42434	26642184	Waqas M., Khan A.L., Shahzad R., Ullah I., Khan A.R., Lee I.J.	Mutualistic fungal endophytes produce phytohormones and organic acids that promote japonica rice plant growth under prolonged heat stress.	J Zhejiang Univ Sci B	16(12)	1011-8	2015		
42435	26655677	Timabud T., Yin X., Pongdontri P., Komatsu S.	Gel-free/label-free proteomic analysis of developing rice grains under heat stress.	J Proteomics	133	1-19	2015		
42436	26685185	Huang J., Wijeratne A.J., Tang C., Zhang T., Fenelon R.E., Owen H.A., Zhao D.	Ectopic expression of TAPETUM DETERMINANT1 affects ovule development in Arabidopsis.	J. Exp. Bot.			2015		
42437	26719053	Wang Y., Lu W., Deng D.	Bioinformatic landscapes for plant transcription factor system research.	Planta			2015		
42438	26054239	Ruengphayak S., Ruanjaichon V., Saensuk C., Phromphan S., Tragoonrung S., Kongkachuichai R., Vanavichit A.	Forward screening for seedling tolerance to Fe toxicity reveals a polymorphic mutation in ferric chelate reductase in rice.	Rice (N Y)	8(1)	36	2015		
42439	26663822	Ebel C., Hanin M.	Maintenance of meristem activity under stress: is there an interplay of RSS1-like proteins with the RBR pathway ?	Plant Biol (Stuttg)			2015		
42440	26697049	Egusa M., Matsui H., Urakami T., Okuda S., Ifuku S., Nakagami H., Kaminaka H.	chitin nanofiber Elucidates the Elicitor Activity of Polymeric Chitin in Plants.	Front Plant Sci	6	1098	2015		
42441	26634524	Li W.C., Wang J., Sun Y.L., Ji S.D., Guo S.W.	Morphology and photosynthetic enzyme activity of maize phosphoenolpyruvate carboxylase transgenic rice.	Genet. Mol. Res.	14(4)	15572-6	2015		
42442	26677125	Wang J., Xu H., Li N., Fan F., Wang L., Zhu Y., Li S.	Artificial Selection of Gn1a Plays an Important role in Improving Rice Yields Across Different Ecological Regions.	Rice (N Y)	8(1)	37	2015		
42443	26054238	Hu H., Wang J., Shi C., Yuan C., Peng C., Yin J., Li W., He M., Wang J., Ma B., Wang Y., Li S., Chen X.	A receptor like kinase gene with expressional responsiveness on Xanthomonas oryzae pv. oryzae is essential for Xa21-mediated disease resistance.	Rice (N Y)	8(1)	34	2015	OGG,XIK1,XA21,KS4,MAS	Ogg, OsOGG,OsXIK1,Xa21*, Xa21, OsXA21,OsKS4, KS4, KSL4, OsKSL4, DTS2, OsDTS2, OsTPS16, TPS16, TPS8, OsTPS8,OsMAS, MAS1, OsMAS1, OsMAS/SDR110C-MS1, SDR110C-MS1, OsSDR110C-MS1, OsMS1, MS1
42444	26633387	Zhang G., Wang F., Li J., Ding Q., Zhang Y., Li H., Zhang J., Gao J.	Genome-Wide Identification and Analysis of the VQ Motif-Containing Protein Family in Chinese Cabbage (Brassica rapa L. ssp. Pekinensis).	Int J Mol Sci	16(12)	28683-704	2015		
42445	26714258	Qiu X., Pang Y., Yuan Z., Xing D., Xu J., Dingkuhn M., Li Z., Ye G.	Genome-Wide Association Study of Grain Appearance and Milling Quality in a Worldwide Collection of Indica Rice Germplasm.	PLoS ONE	10(12)	e0145577	2015		
42446	26641488	Petrova A., Smith C.M.	Application of Brown Planthopper Salivary Gland Extract to Rice Plants Induces Systemic Host mRNA Patterns Associated with Nutrient Remobilization.	PLoS ONE	10(12)	e0141769	2015		
42447	26688693	Roffler S., Menardo F., Wicker T.	The making of a genomic parasite - the Mothra family sheds light on the evolution of Helitrons in plants.	Mob DNA	6	23	2015		
42448	26714321	Yang J., Chen X., Zhu C., Peng X., He X., Fu J., Ouyang L., Bian J., Hu L., Sun X., Xu J., He H.	Using RNA-seq to Profile Gene Expression of Spikelet Development in Response to Temperature and Nitrogen during Meiosis in Rice (Oryza sativa L.).	PLoS ONE	10(12)	e0145532	2015		
42449	26633389	Zhang W., Yang L., Li M., Ma B., Yan C., Chen J.	Omics-Based Comparative Transcriptional Profiling of Two Contrasting Rice Genotypes during Early Infestation by Small Brown Planthopper.	Int J Mol Sci	16(12)	28746-64	2015		
42450	26708605	Matsuda S., Takano S., Sato M., Furukawa K., Nagasawa H., Yoshikawa S., Kasuga J., Tokuji Y., Yazaki K., Nakazono M., Takamure I., Kato K.	Rice stomatal closure requires guard cell plasma membrane ATP-binding cassette transporter RCN1/OsABCG5.	Mol Plant			2015		
42451	26054242	Calingacion M., Fang L., Quiatchon-Baeza L., Mumm R., Riedel A., Hall R.D., Fitzgerald M.	Delving deeper into technological innovations to understand differences in rice quality.	Rice (N Y)	8(1)	43	2015		
42452	26687860	Yin H., Akimoto M., Kaewcheenchai R., Sotowa M., Ishii T., Ishikawa R.	Inconsistent diversities between nuclear and plastid genomes of AA genome species in the genus Oryza.	Genes Genet. Syst.			2015		
42453	26674966	Min H.J., Jung Y.J., Kang B.G., Kim W.T.	CaPUB1, a Hot Pepper U-box E3 Ubiquitin Ligase, Confers Enhanced Cold Stress Tolerance and Decreased Drought Stress Tolerance in Transgenic Rice (Oryza sativa L.).	Mol. Cells			2015		
42454	26668334	Endo M., Mikami M., Toki S.	Bi-allelic gene targeting in rice.	Plant Physiol.			2015		
42455	26689769	Cheng S., Zhou D.X., Zhao Y.	WUSCHEL-related homeobox gene WOX11 increases rice drought resistance by controlling root hair formation and root system development.	Plant Signal Behav		0	2015		
42456	26713754	Zhao X., Zhang G., Wang Y., Zhang F., Wang W., Zhang W., Fu B., Xu J., Li Z.	Metabolic Profiling and Physiological Analysis of a Novel Rice Introgression Line with Broad Leaf Size.	PLoS ONE	10(12)	e0145646	2015		
42457	26713764	Zhu Y., Chen K., Mi X., Chen T., Ali J., Ye G., Xu J., Li Z.	Identification and Fine Mapping of a Stably Expressed QTL for Cold Tolerance at the Booting Stage Using an Interconnected Breeding Population in Rice.	PLoS ONE	10(12)	e0145704	2015		
42458	26648962	Spence C.A., Lakshmanan V., Donofrio N., Bais H.P.	Crucial Roles of Abscisic Acid Biogenesis in Virulence of Rice Blast Fungus Magnaporthe oryzae.	Front Plant Sci	6	1082	2015		
42459	26708765	Xu X., Zhao J., Li Y., Fan Y., Zhu N., Gao Y., Li B., Liu H., Li Y.F.	Demethylation of methylmercury in growing rice plants: An evidence of self-detoxification.	Environ. Pollut.	210	113-120	2015		
42460	26696397	Banik A., Mukhopadhaya S.K., Dangar T.K.	Characterization of N2-fixing plant growth promoting endophytic and epiphytic bacterial community of Indian cultivated and wild rice (Oryza spp.) genotypes.	Planta			2015		
42461	26719738	Shimosaka E., Ozawa K.	Overexpression of cold-inducible wheat Galactinol synthase confers tolerance to chilling stress in transgenic rice.	Breed. Sci.	65(5)	363-71	2015		
42462	26671655	Chakravarthi M., Syamaladevi D.P., Harunipriya P., Augustine S.M., Subramonian N.	A novel PR10 promoter from Erianthus arundinaceus directs high constitutive transgene expression and is enhanced upon wounding in heterologous plant systems.	Mol. Biol. Rep.			2015		
42463	26715311	Moumeni A., Satoh K., Venuprasad R., Serraj R., Kumar A., Leung H., Kikuchi S.	Transcriptional profiling of the leaves of near-isogenic rice lines with contrasting drought tolerance at the reproductive stage in response to water deficit.	BMC Genomics	16(1)	1110	2015		
42464	26626493	Travis A.J., Norton G.J., Datta S., Sarma R., Dasgupta T., Savio F.L., Macaulay M., Hedley P.E., McNally K.L., Sumon M.H., Islam M.R., Price A.H.	Assessing the genetic diversity of rice originating from Bangladesh, Assam and West Bengal.	Rice (N Y)	8(1)	35	2015		
42465	26648960	Lin C., Hara A., Comparini D., Bouteau F., Kawano T.	Zinc-Dependent Protection of Tobacco and Rice Cells From Aluminum-Induced Superoxide-Mediated Cytotoxicity.	Front Plant Sci	6	1079	2015		
42466	26710230	Sekhar S., Gharat S.A., Panda B.B., Mohaptra T., Das K., Kariali E., Mohapatra P.K., Shaw B.P.	Identification and Characterization of Differentially Expressed Genes in Inferior and Superior Spikelets of Rice Cultivars with Contrasting Panicle-Compactness and Grain-Filling Properties.	PLoS ONE	10(12)	e0145749	2015		
42467	26659593	Xiao G., Qin H., Zhou J., Quan R., Lu X., Huang R., Zhang H.	OsERF2 controls rice root growth and hormone responses through tuning expression of key genes involved in hormone signaling and sucrose metabolism.	Plant Mol. Biol.			2015		
42468	26700579	Zhou Y., Yin H., Li J., Li B., Li X., Ai S., Zhang X.	Electrochemical biosensor for microRNA detection based on poly(U) polymerase mediated isothermal signal amplification.	Biosens Bioelectron	79	79-85	2015		
42469	26719745	Van Mai T., Fujita D., Matsumura M., Yoshimura A., Yasui H.	Genetic basis of multiple resistance to the brown planthopper (Nilaparvata lugens St?l) and the green rice leafhopper (Nephotettix cincticeps Uhler) in the rice cultivar 'ASD7' (Oryza sativa L. ssp. indica).	Breed. Sci.	65(5)	420-9	2015		
42470	26714456	Gharat S.A., Shaw B.P.	Novel and conserved miRNAs in the halophyte Suaeda maritima identified by deep sequencing and computational predictions using the ESTs of two mangrove plants.	BMC Plant Biol.	15(1)	301	2015		
42471	26650613	Oldenburg D.J., Bendich A.J.	The linear plastid chromosomes of maize: terminal sequences, structures, and implications for DNA replication.	Curr. Genet.			2015		
42472	26641666	Ma L., Zhu F., Li Z., Zhang J., Li X., Dong J., Wang T.	TALEN-Based Mutagenesis of Lipoxygenase LOX3 Enhances the Storage Tolerance of Rice (Oryza sativa) Seeds.	PLoS ONE	10(12)	e0143877	2015		
42473	26655679	Wang R., Zhu M., Ye R., Liu Z., Zhou F., Chen H., Lin Y.	Novel green tissue-specific synthetic promoters and cis-regulatory elements in rice.	Sci Rep	5	18256	2015		
42474	26717118	Foo J.L., Susanto A.V., Keasling J.D., Leong S.S., Chang M.W.	Whole-cell biocatalytic and de novo production of alkanes from free fatty acids in Saccharomyces cerevisiae.	Biotechnol. Bioeng.			2015		
42475	26054240	Zhang B., Ye W., Ren D., Tian P., Peng Y., Gao Y., Ruan B., Wang L., Zhang G., Guo L., Qian Q., Gao Z.	Genetic analysis of flag leaf size and candidate genes determination of a major QTL for flag leaf width in rice.	Rice (N Y)	8(1)	39	2015		
42476	26646110	Hou Y., Wang L., Wang L., Liu L., Li L., Sun L., Rao Q., Zhang J., Huang S.	JMJ704 positively regulates rice defense response against Xanthomonas oryzae pv. oryzae infection via reducing H3K4me2/3 associated with negative disease resistance regulators.	BMC Plant Biol.	15	286	2015		
42477	26714735	Zhang L., Liu G., Jia J., Zhao G., Xia C., Zhang L., Li F., Zhang Q., Dong C., Gao S., Han L., Guo X., Zhang X., Wu J., Liu X., Kong X.	The wheat MYB-related transcription factor TaMYB72 promotes flowering in rice.	J Integr Plant Biol			2015		
42478	26631017	Vinnakota R., Ramakrishnan A.M., Samdani A., Venugopal M.A., Ram B.S., Krishnan S.N., Murugesan D., Sankaranarayanan K.	A comparison of aquaporin function in mediating stomatal aperture gating among drought-tolerant and sensitive varieties of rice (Oryza sativa L.).	Protoplasma			2015		
42479	26697896	An G., Yi J., Moon S., Lee Y.S., Zhu L., Liang W., Zhang D.B., Jung K.H.	Defective Tapetum Cell Death 1 (DTC1) Regulates ROS Levels by Binding to Metallothionein during Tapetum Degeneration.	Plant Physiol.			2015	C6,MT2B,CYP704B2,AP37 ,MTI4C,RADC1,CP1,DTC1	Osc6, Osg6B, OsG6B, OsLTPG25, OsLTPg25, OsLtpVII.1, Os C6,OsMT2b, MT2b, OsMT-I-2c, MT-I-2c, MT2C, MT2BL, OsMT2C, OsMT2BL, MTE, OsMT2b1, OsMT2b2, MT2b1, MT2b2, MTb, met1, OsMTe, OsMT-I-2c, OsB22EL8, MTe, MT-I-2c, B22EL8,OsCYP704B2,OsAP37,MT-1-4b, OsMT1d, MT1d, OsMT-I-4c, MT1c, OsMT1c,OsAP25, Radc1, OsRADC1, AP25,OsCP1, Os CP1,OsDTC1, OsNRP10, NRP10
42480	26644084	Huang S., Chen S., Liang Z., Zhang C., Yan M., Chen J., Xu G., Fan X., Zhang Y.	Knockdown of the partner protein OsNAR2.1 for high-affinity nitrate transport represses lateral root formation in a nitrate-dependent manner.	Sci Rep	5	18192	2015		
42481	26719744	Lin Q., Wang W., Ren Y., Jiang Y., Sun A., Qian Y., Zhang Y., He N., Hang N.T., Liu Z., Li L., Liu L., Jiang L., Wan J.	Genetic dissection of seed storability using two different populations with a same parent rice cultivar N22.	Breed. Sci.	65(5)	411-9	2015		
42482	26679839	Zhou Z., Pang Z., Li G., Lin C., Wang J., Lv Q., He C., Zhu L.	Endoplasmic reticulum membrane-bound MoSec62 is involved in suppression of rice immunity and is essential for pathogenicity of Magnaporthe oryzae.	Mol. Plant Pathol.			2015		
42483	26646386	Wongpia A., Roytrakul S., Nomura M., Tajima S., Lomthaisong K., Mahatheeranont S., Niamsup H.	Proteomic Analysis of Isogenic Rice Reveals Proteins Correlated with Aroma Compound Biosynthesis at Different Developmental Stages.	Mol. Biotechnol.			2015		
42484	26667653	Buffon G., Blasi ?A., Adamski J.M., Ferla N.J., Berger M., Santi L., Lavall?e-Adam M., Yates J.R., Beys-da-Silva WO., Sperotto R.A.	Physiological and Molecular Alterations Promoted by Schizotetranychus oryzae Mite Infestation in Rice Leaves.	J. Proteome Res.			2015		
42485	26657562	Guo L., Liu C.M.	A single-nucleotide exon found in Arabidopsis.	Sci Rep	5	18087	2015		
42486	26704419	Mi J., Li G., Huang J., Yu H., Zhou F., Zhang Q., Ouyang Y., Mou T.	Stacking S5-n and f5-n to overcome sterility in indica-japonica hybrid rice.	Theor. Appl. Genet.			2015		
42487	26681058	Naeem M., Ghouri F., Shahid M.Q., Iqbal M., S Baloch F., Chen L., Allah S., Babar M., Rana M.	Genetic diversity in mutated and non-mutated rice varieties.	Genet. Mol. Res.	14(4)	17109-23	2015		
42488	26467468	Liu Q., Yang J., Zhang S., Zhao J., Feng A., Yang T., Wang X., Mao X., Dong J., Zhu X., Leung H., Leach J.E., Liu B.	OsGF14b Positively Regulates Panicle Blast Resistance but Negatively Regulates Leaf Blast Resistance in Rice.	Mol. Plant Microbe Interact.		MPMI03150047R	2015		
42489	26640944	He B., Tao X., Gu Y., Wei C., Cheng X., Xiao S., Cheng Z., Zhang Y.	Transcriptomic Analysis and the Expression of Disease-Resistant Genes in Oryza meyeriana under Native Condition.	PLoS ONE	10(12)	e0144518	2015		
42490	26690414	He B., Gu Y., Tao X., Cheng X., Wei C., Fu J., Cheng Z., Zhang Y.	De Novo Transcriptome Sequencing of Oryza officinalis Wall ex Watt to Identify disease-resistance Genes.	Int J Mol Sci	16(12)	29482-95	2015		
42491	26686058	Cai F., Ren J., Tao S., Wang X.	Uptake, translocation and transformation of antimony in rice (Oryza sativa L.) seedlings.	Environ. Pollut.	209	169-76	2016		
42492	26673149	Lu Q., Zhang M., Niu X., Wang S., Xu Q., Feng Y., Wang C., Deng H., Yuan X., Yu H., Wang Y., Wei X.	Genetic variation and association mapping for 12 agronomic traits in indica rice.	BMC Genomics	16(1)	1067	2015		
42493	26689479	Imamura T., Sekine K.T., Yamashita T., Kusano H., Shimada H.	Production of recombinant thanatin in watery rice seeds that lack an accumulation of storage starch and proteins.	J. Biotechnol.			2015		
42494	26709310	Yang Y., Xu J., Huang L., Leng Y., Dai L., Rao Y., Chen L., Wang Y., Tu Z., Hu J., Ren D., Zhang G., Zhu L., Guo L., Qian Q., Zeng D.	PGL, encoding chlorophyllide a oxygenase 1, impacts leaf senescence and indirectly affects grain yield and quality in rice.	J. Exp. Bot.			2015	YGL10,PORA,DVR,NYC1,HEMA,PRX16,CATB,NOL,APX1,CHLH,NYC3,FGL,NYC4,YGL1,_,APX2,EAS1 ,AMTR1,RCCR1	CAO, OsCAO, CAO1, OsCAO1, Oslls1, Lls1, DVR, PGL,OsPorA, OsPORA,OsDVR,nyc1, OsNYC1,HEMA1, OsHEMA, GluTR, OsHEMA1, hemA,prx16, OsPRX16, OsPOD1, POD1,CatB, CAT-B, OsCatB, OsCATB, OsCAT1B, CAT1B, CAT2, OsCAT2,nol, NOL1, OsNOL, OsNOL1,OsAPX1, APXa, OsAPXa, OsAPx01, OsAPx1, OSAPX1, APx1, cAPX, APX2, cAPXa, OscAPXa,OsChlH, ChlH, OsCHLH,nyc3, OsNYC3, PPH,fgl(fl), fl, fgl, OsFGL, OsPorB, PoPA, PORA, porA, OsPORA, PORB, OsPORB,OsNYC4, THF1, OsTHF1,OsYGL1, CHLG, Ygl1, CS, OsCHLG,prx41, OsPrx41, OsPOX8.1, POX8.1, OsPOD2, POD2,OsAPX2, OsAPx02, APXb, OsAPx2, OSAPX2, APx2, cAPX, OsAPX1, APX1,OsPAO, PAO, OsACD1, ACD1, OsEAS1, RCD2, OsRCD2,Osh36, OsH36, H36, OsAMTR1,OsRCCR1, OsRCCR, RCCR
42495	26697348	Reddy M.M., Ulaganathan K.	RNA-Seq analysis of urea nutrition responsive transcriptome of Oryza sativa elite indica cultivar RP Bio 226.	Genom Data	6	112-3	2015		
42496	26719743	Fujino K., Obara M., Shimizu T., Koyanagi K.O., Ikegaya T.	Genome-wide association mapping focusing on a rice population derived from rice breeding programs in a region.	Breed. Sci.	65(5)	403-10	2015		
42497	26555942	Xu H., Bao J.D., Dai J.S., Li Y., Zhu Y.	Genome-Wide Identification of New Reference Genes for qRT-PCR Normalization under High Temperature Stress in Rice Endosperm.	PLoS ONE	10(11)	e0142015	2015		
42498	26607788	Qu G., Kruszka K., Plewka P., Yang S.Y., Chiou T.J., Jarmolowski A., Szweykowska-Kulinska Z., Echeverria M., Karlowski W.M.	Promoter-based identification of novel non-coding RNAs reveals the presence of dicistronic snoRNA-miRNA genes in Arabidopsis thaliana.	BMC Genomics	16(1)	1009	2015		
42499	26635829	Basak J., Nithin C.	Targeting Non-Coding RNAs in Plants with the CRISPR-Cas Technology is a Challenge yet Worth Accepting.	Front Plant Sci	6	1001	2015		
42500	26585422	Zhao W., Yang P., Kang L., Cui F.	Different pathogenicities of Rice stripe virus from the insect vector and from viruliferous plants.	New Phytol.			2015		
42501	26600014	Islam T., Manna M., Reddy M.K.	glutathione Peroxidase of Pennisetum glaucum (PgGPx) Is a Functional Cd2+ Dependent Peroxiredoxin that Enhances Tolerance against Salinity and Drought Stress.	PLoS ONE	10(11)	e0143344	2015		
42502	26545757	Celi?ska E., Borkowska M., Bia?as W.	Evaluation of a recombinant insect-derived amylase performance in simultaneous saccharification and fermentation process with industrial yeasts.	Appl. Microbiol. Biotechnol.			2015		
42503	26528551	Meng Z., Meng Z., Zhang R., Liang C., Wan J., Wang Y., Zhai H., Guo S.	Expression of the Rice Arginase Gene OsARG in Cotton Influences the Morphology and Nitrogen Transition of Seedlings.	PLoS ONE	10(11)	e0141530	2015		
42504	26606179	Dubey A.K., Kumar N., Sahu N., Verma P.K., Chakrabarty D., Behera S.K., Mallick S.	Response of two rice cultivars differing in their sensitivity towards arsenic, differs in their expression of glutaredoxin and glutathione S transferase genes and antioxidant usage.	Ecotoxicol. Environ. Saf.	124	393-405	2016		
42505	26615033	Wang H., Sun R., Cao Y., Pei W., Sun Y., Zhou H., Wu X., Zhang F., Luo L., Shen Q., Xu G., Sun S.	OsSIZ1, a SUMO E3 Ligase Gene, is Involved in the Regulation of the Responses to Phosphate and Nitrogen in Rice.	Plant Cell Physiol.	56(12)	2381-95	2015		
42506	26608643	Zhang L., Ren Y., Lu B., Yang C., Feng Z., Liu Z., Chen J., Ma W., Wang Y., Yu X., Wang Y., Zhang W., Wang Y., Liu S., Wu F., Zhang X., Guo X., Bao Y., Jiang L., Wan J.	FLOURY ENDOSPERM7 encodes a regulator of starch synthesis and amyloplast development essential for peripheral endosperm development in rice.	J. Exp. Bot.			2015		
42507	26646900	Lu L., Chen X., Sanders D., Qian S., Zhong X.	High-resolution mapping of H4K16 and H3K23 acetylation reveals conserved and unique distribution patterns in Arabidopsis and rice.	Epigenetics	10(11)	1044-53	2015		
42508	26615032	Yamaoka C., Suzuki Y., Makino A.	Differential Expression of Genes of the Calvin-Benson Cycle and its Related Genes During Leaf Development in Rice.	Plant Cell Physiol.			2015		
42509	26600547	Yang Y.C., Kung T.L., Hu C.Y., Lin S.F.	Development of primer pairs from diverse chloroplast genomes for use in plant phylogenetic research.	Genet. Mol. Res.	14(4)	14857-70	2015		
42510	26687010	Nath M., Yadav S., Kumar Sahoo R., Passricha N., Tuteja R., Tuteja N.	PDH45 transgenic rice maintain cell viability through lower accumulation of Na(+), ROS and calcium homeostasis in roots under salinity stress.	J. Plant Physiol.	191	1-11	2015		
42511	26574735	Kang H., Wang Y., Peng S., Zhang Y., Xiao Y., Wang D., Qu S., Li Z., Yan S., Wang Z., Liu W., Ning Y., Korniliev P., Leung H., Mezey J., McCouch S.R., Wang G.L.	Dissection of the genetic architecture of rice resistance to the blast fungus Magnaporthe oryzae.	Mol. Plant Pathol.			2015		
42512	26578190	Suzuki K., Costa A., Nakayama H., Katsuhara M., Shinmyo A., Horie T.	OsHKT2;2/1-mediated Na(+) influx over K(+) uptake in roots potentially increases toxic Na(+) accumulation in a salt-tolerant landrace of rice Nona Bokra upon salinity stress.	J. Plant Res.			2015		
42513	26613898	Qiu J., Hou Y., Tong X., Wang Y., Lin H., Liu Q., Zhang W., Li Z., Nallamilli B.R., Zhang J.	Quantitative phosphoproteomic analysis of early seed development in rice (Oryza sativa L.).	Plant Mol. Biol.			2015		
42514	26617267	Ikeda T., Tanaka W., Mikami M., Endo M., Hirano H.Y.	Generation of artificial drooping leaf mutants by CRISPR-Cas9 technology in rice.	Genes Genet. Syst.			2015		
42515	26531864	De Paolo S., Gaudio L., Aceto S.	Analysis of the TCP genes expressed in the inflorescence of the orchid Orchis italica.	Sci Rep	5	16265	2015		
42516	26612070	Buanafina M.M., Fescemyer H.W., Sharma M., Shearer E.A.	Functional testing of a PF02458 homologue of putative rice arabinoxylan feruloyl transferase genes in Brachypodium distachyon.	Planta			2015		
42517	26337117	Rosell? M., Poschenrieder C., Guns? B., Barcel? J., Llugany M.	Differential activation of genes related to aluminium tolerance in two contrasting rice cultivars.	J. Inorg. Biochem.	152	160-6	2015		
42518	26600549	Zhang Y.D., Zheng J., Liang Z.K., Liang Y.L., Peng Z.H., Wang C.L.	Verification and evaluation of grain QTLs using RILs from TD70 x Kasalath in rice.	Genet. Mol. Res.	14(4)	14882-92	2015		
42519	26640473	Sailaja B., Subrahmanyam D., Neelamraju S., Vishnukiran T., Rao Y.V., Vijayalakshmi P., Voleti S.R., Bhadana V.P., Mangrauthia S.K.	Integrated Physiological, Biochemical, and Molecular Analysis Identifies Important Traits and Mechanisms Associated with Differential Response of Rice Genotypes to Elevated Temperature.	Front Plant Sci	6	1044	2015		
42520	26522477	Qi Z., Liu M., Dong Y., Zhu Q., Li L., Li B., Yang J., Li Y., Ru Y., Zhang H., Zheng X., Wang P., Zhang Z.	The syntaxin protein (MoSyn8) mediates intracellular trafficking to regulate conidiogenesis and pathogenicity of rice blast fungus.	New Phytol.			2015		
42521	26610268	Petitot A.S., Dereeper A., Agbessi M., Da Silva C., Guy J., Ardisson M., Fernandez D.	Dual RNA-seq reveals Meloidogyne graminicola transcriptome and candidate effectors during the interaction with rice plants.	Mol. Plant Pathol.			2015		
42522	26560141	Boonyaves K., Gruissem W., Bhullar N.K.	NOD promoter-controlled AtIRT1 expression functions synergistically with NAS and FERRITIN genes to increase iron in rice grains.	Plant Mol. Biol.			2015		
42523	26466747	Jeong K., Mattes N., Catausan S., Chin J.H., Paszkowski U., Heuer S.	Genetic diversity for mycorrhizal symbiosis and phosphate transporters in rice.	J Integr Plant Biol	57(11)	969-79	2015		
42524	26530637	Guo C., Sun X., Chen X., Yang S., Li J., Wang L., Zhang X.	Cloning of novel rice blast resistance genes from two rapidly evolving NBS-LRR gene families in rice.	Plant Mol. Biol.	90(1-2)	95-105	2016		
42525	26674380	Zhao Y.T., Wang M., Wang Z.M., Fang R.X., Wang X.J., Jia Y.T.	Dynamic and Coordinated Expression Changes of Rice Small RNAs in Response to Xanthomonas oryzae pv. oryzae.	J Genet Genomics	42(11)	625-37	2015		
42526	26614751	Regmi K.C., Zhang S., Gaxiola R.A.	Apoplasmic loading in the rice phloem supported by the presence of sucrose synthase and plasma membrane-localized proton pyrophosphatase.	Ann. Bot.			2015		
42527	26590017	Byun M.Y., Cui L.H., Kim W.T.	Suppression of OsKu80 results in defects in developmental growth and increased telomere length in rice (Oryza sativa L.).	Biochem. Biophys. Res. Commun.	468(4)	857-62	2015		
42528	26556651	Hooper C.M., Castleden I.R., Aryamanesh N., Jacoby R.P., Millar A.H.	Finding the Subcellular Location of Barley, Wheat, Rice and Maize Proteins: The Compendium of Crop Proteins with Annotated Locations (cropPAL).	Plant Cell Physiol.			2015		
42529	26615150	Fang Y., Lu H., Chen S., Zhu K., Song H., Qian H.	Leaf proteome analysis provides insights into the molecular mechanisms of bentazon detoxification in rice.	Pestic Biochem Physiol	125	45-52	2015		
42530	26581951	Fu X.Y., Zhu B., Han H.J., Zhao W., Tian Y.S., Peng R.H., Yao Q.H.	Enhancement of naphthalene tolerance in transgenic Arabidopsis plants overexpressing the Ferredoxin-like protein (ADI1) from rice.	Plant Cell Rep.			2015	_	Fd1, OsFd1, ADI1, OsADI1
42531	26640468	Lu Y., Liu Y., Niu X., Yang Q., Hu X., Zhang H.Y., Xia J.	Systems Genetic Validation of the SNP-Metabolite Association in Rice Via Metabolite-Pathway-Based Phenome-Wide Association Scans.	Front Plant Sci	6	1027	2015		
42532	26336841	Yu Z., Taylor J.L., He Y., Ni J.	Enlightenment on the aequorin-based platform for screening Arabidopsis stress sensory channels related to calcium signaling.	Plant Signal Behav	10(11)	e1057366	2015		
42533	26643956	Taniguchi M., Ochiai A., Matsushima K., Tajima K., Kato T., Saitoh E., Tanaka T.	Endotoxin-neutralizing activity and mechanism of action of a cationic alpha-helical antimicrobial octadecapeptide derived from alpha-amylase of rice.	Peptides	75	101-108	2015		
42534	26547398	Ali I., Liu B., Farooq M.A., Islam F., Azizullah A., Yu C., Su W., Gan Y.	Toxicological effects of bisphenol A on growth and antioxidant defense system in Oryza sativa as revealed by ultrastructure analysis.	Ecotoxicol. Environ. Saf.	124	277-84	2016		
42535	26582432	Mahdavi V., Ghanati F., Ghassempour A.	Integrated pathway-based and network-based analysis of GC-MS rice metabolomics data under diazinon stress to infer affected biological pathways.	Anal. Biochem.	494	31-6	2016		
42536	26466878	Wang Y., Gao B.L., Li X.X., Zhang Z.B., Yan R.M., Yang H.L., Zhu D.	Phylogenetic diversity of culturable endophytic fungi in Dongxiang wild rice (Oryza rufipogon Griff), detection of polyketide synthase gene and their antagonistic activity analysis.	Fungal Biol	119(11)	1032-45	2015		
42537	26581349	Zou S., Huang K., Xu W., Luo Y., He X.	Safety assessment of lepidopteran insect-protected transgenic rice with cry2A* gene.	Transgenic Res.			2015		
42538	26576634	Yang J., Chen X., Zhu C., Peng X., He X., Fu J., Ouyang L., Bian J., Hu L., Sun X., Xu J., He H.	RNA-seq reveals differentially expressed genes of rice (Oryza sativa) spikelet in response to temperature interacting with nitrogen at meiosis stage.	BMC Genomics	16(1)	959	2015		
42539	26609814	Plessis A., Hafemeister C., Wilkins O., Gonzaga Z.J., Meyer R.S., Pires I., M?ller C., Septiningsih E.M., Bonneau R., Purugganan M.	Multiple abiotic stimuli are integrated in the regulation of rice gene expression under field conditions.	Elife	4		2015		
42540	26640476	Tao J.J., Chen H.W., Ma B., Zhang W.K., Chen S.Y., Zhang J.S.	The Role of Ethylene in Plants Under Salinity Stress.	Front Plant Sci	6	1059	2015		
42541	26578239	Bund? M., Coca M.	Enhancing blast disease resistance by overexpression of the calcium-dependent protein kinase OsCPK4 in rice.	Plant Biotechnol. J.			2015		
42542	26587748	Gao H., Luo Z., Ge P., He J., Zhou F., Zheng P., Jiang J.	Direct Catalytic Asymmetric Synthesis of beta-Hydroxy Acids from Malonic Acid.	Org. Lett.	17(24)	5962-5	2015		
42543	26635754	Shakeel M., Rais A., Hassan M.N., Hafeez F.Y.	Root Associated Bacillus sp. Improves Growth, Yield and Zinc Translocation for Basmati Rice (Oryza sativa) Varieties.	Front Microbiol	6	1286	2015		
42544	26618163	Kim M., Kim H., Lee W., Lee Y., Kwon S.W., Lee J.	Quantitative Shotgun Proteomics Analysis of Rice Anther Proteins after Exposure to High Temperature.	International Journal of Genomics	2015	238704	2015		
42545	26624932	Liu Y., Li J., Luo Z., Wang H., Liu F.	The fate of fusion Cry1Ab/1Ac proteins from Bt-transgenic rice in soil and water.	Ecotoxicol. Environ. Saf.	124	455-9	2016		
42546	26546318	Aoki Y., Okamura Y., Tadaka S., Kinoshita K., Obayashi T.	ATTED-II in 2016: A Plant Coexpression Database Towards Lineage-Specific Coexpression.	Plant Cell Physiol.			2015		
42547	26537003	Huang W.K., Ji H.L., Gheysen G., Debode J., Kyndt T.	Biochar-amended potting medium reduces the susceptibility of rice to root-knot nematode infections.	BMC Plant Biol.	15	267	2015		
42548	26578693	Kawahara Y., Oono Y., Wakimoto H., Ogata J., Kanamori H., Sasaki H., Mori S., Matsumoto T., Itoh T.	TENOR: Database for Comprehensive mRNA-Seq Experiments in Rice.	Plant Cell Physiol.			2015	PERK7,_,_	OsSTA186, OsPERK7,,
42549	26573512	Han Y., Zhang K., Yang J., Zhang N., Fang A., Zhang Y., Liu Y., Chen Z., Hsiang T., Sun W.	Differential expression profiling of the early response to Ustilaginoidea virens between false smut resistant and susceptible rice varieties.	BMC Genomics	16(1)	955	2015		
42550	26587012	Lee J., Lee W., Kwon S.W.	A quantitative shotgun proteomics analysis of germinated rice embryos and coleoptiles under low-temperature conditions.	Proteome Sci	13	27	2015		
42551	26525061	Jameson P.E., Song J.	Cytokinin: a key driver of seed yield.	J. Exp. Bot.			2015		
42552	26603141	Hayashi K., Fujita Y., Ashizawa T., Suzuki F., Nagamura Y., Hayano-Saito Y.	Serotonin attenuates biotic stress and leads to lesion browning caused by a hypersensitive response to Magnaporthe oryzae penetration in rice.	Plant J.			2015		
42553	26452831	Hao Y.H., Zhang Z., Wang L., Liu C., Lei A.W., Yuan B.F., Feng Y.Q.	Stable isotope labeling assisted liquid chromatography-electrospray tandem mass spectrometry for quantitative analysis of endogenous gibberellins.	Talanta	144	341-8	2015		
42554	26617618	Singh A.P., Pandey B.K., Deveshwar P., Narnoliya L., Parida S.K., Giri J.	JAZ Repressors: Potential Involvement in Nutrients Deficiency Response in Rice and Chickpea.	Front Plant Sci	6	975	2015		
42555	26546731	Li M., Wang K., Li S., Yang P.	Exploration of rice pistil responses during early post-pollination through a combined proteomic and transcriptomic analysis.	J Proteomics	131	214-26	2016		
42556	26360816	Ye J., Zhang Z., Long H., Zhang Z., Hong Y., Zhang X., You C., Liang W., Ma H., Lu P.	Proteomic and phosphoproteomic analyses reveal extensive phosphorylation of regulatory proteins in developing rice anthers.	Plant J.	84(3)	527-44	2015		
42557	26445326	Satheesh V., Chidambaranathan P., Jagannadham P.T., Kumar V., Jain P.K., Chinnusamy V., Bhat S.R., Srinivasan R.	Transmembrane START domain Proteins: In silico Identification, Characterization and Expression Analysis under Stress Conditions in Chickpea (Cicer arietinum L.).	Plant Signal Behav		0	2015		
42558	26472068	Mochizuki S., Minami E., Nishizawa Y.	Live-cell imaging of rice cytological changes reveals the?importance of host vacuole maintenance for biotrophic?invasion by blast fungus, Magnaporthe oryzae.	Microbiologyopen			2015		
42559	26453434	Hu L., Ye M., Li R., Zhang T., Zhou G., Wang Q., Lu J., Lou Y.	The Rice Transcription Factor WRKY53 Suppresses Herbivore-Induced Defenses by Acting as a Negative Feedback Modulator of Mitogen-Activated Protein Kinase Activity.	Plant Physiol.	169(4)	2907-21	2015		
42560	26541262	Yu S., Bian Y., Zhou R., Mou R., Chen M., Cao Z.	Robust method for the analysis of phytochelatins in rice by high-performance liquid chromatography coupled with electrospray tandem mass spectrometry based on polymeric column materials.	J Sep Sci			2015		
42561	26484897	Byeon Y., Lee H.J., Lee H.Y., Back K.	Cloning and functional characterization of the Arabidopsis N-acetylserotonin O-methyltransferase responsible for melatonin synthesis.	J. Pineal Res.			2015		
42562	26465130	Zhao Q.C., Liu M.H., Zhang X.W., Lin C.Y., Zhang Q., Shen Z.C.	Generation of insect-resistant and glyphosate-tolerant rice by introduction of a T-DNA containing two Bt insecticidal genes and an EPSPS gene.	J Zhejiang Univ Sci B	16(10)	824-31	2015		
42563	26461930	Jin Z., Wong A., Foo J.L., Ng J., Cao Y.X., Chang M.W., Yuan Y.J.	Engineering Saccharomyces cerevisiae to produce odd chain-length fatty alcohols.	Biotechnol. Bioeng.			2015		
42564	26448265	Goto S., Sasakura-Shimoda F., Yamazaki M., Hayashi N., Suetsugu M., Ochiai H., Takatsuji H.	Development of disease-resistant rice by pathogen-responsive expression of WRKY45.	Plant Biotechnol. J.			2015		
42565	26503135	van Zeijl A., Liu W., Xiao T.T., Kohlen W., Yang W.C., Bisseling T., Geurts R.	The strigolactone biosynthesis gene DWARF27 is co-opted in rhizobium symbiosis.	BMC Plant Biol.	15	260	2015		
42566	26519289	Lee C.M., Park J., Kim B., Seo J., Lee G., Jang S., Koh H.J.	Influence of Multi-Gene Allele Combinations on grain size.of Rice and Development of a Regression Equation Model to Predict Grain Parameters.	Rice (N Y)	8(1)	33	2015		
42567	26398795	Huang Z., Lin J., Cheng Z., Xu M., Huang X., Yang Z., Zheng J.	Production of dammarane-type sapogenins in rice by expressing the dammarenediol-II synthase gene from Panax ginseng C.A. Mey.	Plant Sci.	239	106-14	2015		
42568	26697384	Saha C., Seal A.	Early changes in shoot transcriptome of rice in response to Rhodotorula mucilaginosa JGTA-S1.	Genom Data	6	237-40	2015		
42569	26459328	Pettk?-Szandtner A., Cserh?ti M., Barr?co RM., Hariharan S., Dudits D., Beemster G.T.	Core cell cycle regulatory genes in rice and their expression profiles across the growth zone of the leaf.	J. Plant Res.	128(6)	953-74	2015		
42570	26473328	Upadhyay A.K., Singh N.K., Singh R., Rai U.N.	Amelioration of arsenic toxicity in rice: Comparative effect of inoculation of Chlorella vulgaris and Nannochloropsis sp. on growth, biochemical changes and arsenic uptake.	Ecotoxicol. Environ. Saf.	124	68-73	2016		
42571	26519466		Information Commons for Rice (IC4R).	Nucleic Acids Res.			2015		
42572	26493518	Jang S.	Functional Characterization of PhapLEAFY, a FLORICAULA/LEAFY Ortholog in Phalaenopsis aphrodite.	Plant Cell Physiol.	56(11)	2234-47	2015		
42573	26523085	Hedden P., Sponsel V.	A Century of Gibberellin Research.	J. Plant Growth Regul.	34(4)	740-60	2015		
42574	26512055	Zhang Y., Lan H., Shao Q., Wang R., Chen H., Tang H., Zhang H., Huang J.	An A20/AN1-type zinc finger protein modulates gibberellins and abscisic acid contents and increases sensitivity to abiotic stress in rice (Oryza sativa).	J. Exp. Bot.	67(1)	315-26	2016		
42575	26471894	Dong X., Zhang D., Liu J., Liu Q.Q., Liu H., Tian L., Jiang L., Qu le Q.	Plastidial Disproportionating Enzyme Participates in Starch Synthesis in Rice Endosperm by Transferring Maltooligosyl Groups from Amylose and Amylopectin to Amylopectin.	Plant Physiol.	169(4)	2496-512	2015		
42576	26332571	Sasaki A., Yamaji N., Mitani-Ueno N., Kashino M., Ma J.F.	A node-localized transporter OsZIP3 is responsible for the preferential distribution of Zn to developing tissues in rice.	Plant J.	84(2)	374-84	2015		
42577	26443104	Chatterjee A., Kundu S.	Revisiting the chlorophyll biosynthesis pathway using genome scale metabolic model of Oryza sativa japonica.	Sci Rep	5	14975	2015		
42578	25982420	Lagunes-Castro Mde L., Trigos ?., L?pez-Monteon A., Mendoza G., Ramos-Ligonio A.	Cytotoxic activity and induction of inflammatory mediators of the methanol:chloroform extract of Fusarium moniliforme.	Rev Iberoam Micol	32(4)	235-41			
42579	26486996	Ren D., Rao Y., Wu L., Xu Q., Li Z., Yu H., Zhang Y., Leng Y., Hu J., Zhu L., Gao Z., Dong G., Zhang G., Guo L., Zeng D., Qian Q.	The pleiotropic ABNORMAL FLOWER AND DWARF1 affects plant height, floral development and grain yield in rice.	J Integr Plant Biol			2015	MADS4,MADS2,DP1,SPW1,RAP1A,RAP1B,LHS1,BLS1	OsMADS4, PI1, DLN140, OsDLN140,OsMADS2, RMADS219, NMADS1, PI2, nmads1, DLN33, OsDLN33,dp1, pa, DP1/PAL1, PAL1, OsDP1, OsAHL11, AHL11,SPW1, spw1, MADS16, OsMADS16,OsMADS15, FDRMADS3, RMADS215, MADS15, DEP,MADS14, OsMADS14, FDRMADS6, RMADS211, AGL10,OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO, OsLHS1, OsLG3b, LG3b, qLGY3, LGY3, DLN80, OsDLN80, OLR, OsOLR, GW3p6, OsGW3p6, OsMADS1GW3p6, MADS1GW3p6, qLGY3/OsLG3b/GW3p6,OsBLS1, OsG1L6, G1L6, TH1, OsTH1, TH1/BSG1/BLS1/AFD1, BSG1, OsBSG1, AFD1, OsAFD1, BH1, OsBH1
42580	26511914	Smith R.A., Gonzales-Vigil E., Karlen S.D., Park J.Y., Lu F., Wilkerson C.G., Samuels L., Ralph J., Mansfield S.D.	Engineering Monolignol p-Coumarate Conjugates into Poplar and Arabidopsis Lignins.	Plant Physiol.	169(4)	2992-3001	2015		
42581	26520834	Huang Y.C., Hsiang E.C., Yang C.C., Wang A.Y.	New insight into the catalytic properties of rice sucrose synthase.	Plant Mol. Biol.	90(1-2)	127-35	2016		
42582	26518431	Liu X., Feng Z.M., Zhou C.L., Ren Y.K., Mou C.L., Wu T., Yang C.Y., Liu S.J., Jiang L., Wan J.M.	Brassinosteroid (BR) biosynthetic gene LHDD10 controls late heading and plant height in rice (Oryza sativa L.).	Plant Cell Rep.			2015	BRD2	brd2, OsBRD2, Dim/dwf1, Dim, dwf1, OsDWF1, DWF1, LTBSG1, OsLTBSG1, LHDD10, OsLHDD10, OsD-LDH3, D-LDH3
42583	26490377	Das A., Das P., Kalita M.C., Mondal T.K.	Computational Identification, Target Prediction, and Validation of Conserved miRNAs in Insulin plant (Costus pictus D. Don).	Appl. Biochem. Biotechnol.			2015		
42584	26479191	Woo J.W., Kim J., Kwon S.I., Corval?n C., Cho S.W., Kim H., Kim S.G., Kim S.T., Choe S., Kim J.S.	DNA-free genome editing in plants with preassembled CRISPR-Cas9 ribonucleoproteins.	Nat. Biotechnol.	33(11)	1162-4	2015		
42585	26477688	Alpuerto J.B., Hussain R.M., Fukao T.	The key regulator of submergence tolerance, SUB1A, promotes photosynthetic and metabolic recovery from submergence damage in rice leaves.	Plant Cell Environ.			2015		
42586	26512058	Wang W.S., Zhao X.Q., Li M., Huang L.Y., Xu J.L., Zhang F., Cui Y.R., Fu B.Y., Li Z.K.	Complex molecular mechanisms underlying seedling salt tolerance in rice revealed by comparative transcriptome and metabolomic profiling.	J. Exp. Bot.	67(1)	405-19	2016		
42587	26333774	Rizal G., Thakur V., Dionora J., Karki S., Wanchana S., Acebron K., Larazo N., Garcia R., Mabilangan A., Montecillo F., Danila F., Mogul R., Pablico P., Leung H., Langdale J.A., Sheehy J., Kelly S., Quick W.P.	Two forward genetic screens for vein density mutants in sorghum converge on a cytochrome P450 gene in the brassinosteroid pathway.	Plant J.	84(2)	257-66	2015		
42588	26511913	Wu J., Shahid M.Q., Chen L., Chen Z., Wang L., Liu X., Lu Y.	Polyploidy Enhances F1 pollen sterility Loci Interactions That Increase Meiosis Abnormalities and pollen sterility in Autotetraploid Rice.	Plant Physiol.	169(4)	2700-17	2015	SB	Sb*, S-b, Hst17, S24, F5-Du
42589	26451896	Hayashi G., Moro C.F., Rohila J.S., Shibato J., Kubo A., Imanaka T., Kimura S., Ozawa S., Fukutani S., Endo S., Ichikawa K., Agrawal G.K., Shioda S., Hori M., Fukumoto M., Rakwal R.	2D-DIGE-based proteome expression changes in leaves of rice seedlings exposed to low-level gamma radiation at Iitate village, Fukushima.	Plant Signal Behav		0	2015		
42590	26498172	Vasudevan K., Gruissem W., Bhullar N.K.	Identification of novel alleles of the rice blast resistance gene Pi54.	Sci Rep	5	15678	2015		
42591	26473722	Huang L.F., Tan C.C., Yeh J.F., Liu H.Y., Liu Y.K., Ho S.L., Lu C.A.	Efficient Secretion of Recombinant Proteins from Rice Suspension-Cultured Cells Modulated by the Choice of Signal Peptide.	PLoS ONE	10(10)	e0140812	2015		
42592	26543735	Zuniga-Soto E., Mullins E., Dedicova B.	Ensifer-mediated transformation: an efficient non-Agrobacterium protocol for the genetic modification of rice.	Springerplus	4	600	2015		
42593	26476396	P G K., Kuruvilla S., Mathew M.K.	Functional characterization of a transition metal ion transporter, OsZIP6 from rice (Oryza sativa L.).	Plant Physiol. Biochem.	97	165-74	2015		
42594	26488581	Gong H.Y., Li Y., Fang G., Hu D.H., Jin W.B., Wang Z.H., Li Y.S.	Transgenic Rice Expressing ICTB and FBP/SBPase Derived from Cyanobacteria Exhibits Enhanced Photosynthesis and Mesophyll Conductance to CO2.	PLoS ONE	10(10)	e0140928	2015		
42595	26497693	Rajpoot R., Rani A., Srivastava R.K., Pandey P., Dubey R.S.	Terminalia arjuna bark extract alleviates nickel toxicity by suppressing its uptake and modulating antioxidative defence in rice seedlings.	Protoplasma			2015		
42596	26492850	Tian Y.S., Xu J., Zhao W., Xing X.J., Fu X.Y., Peng R.H., Yao Q.H.	Identification of a phosphinothricin-resistant mutant of rice glutamine synthetase using DNA shuffling.	Sci Rep	5	15495	2015		
42597	26441054	Xiang C., Liang X., Chu R., Duan M., Cheng J., Ding Z., Wang J.	Fine mapping of a palea defective 1 (pd1), a locus associated with palea and stamen development in rice.	Plant Cell Rep.	34(12)	2151-9	2015		
42598	26470846	Zhao L.H., Zhou X.E., Yi W., Wu Z., Liu Y., Kang Y., Hou L., de Waal PW., Li S., Jiang Y., Scaffidi A., Flematti G.R., Smith S.M., Lam V.Q., Griffin P.R., Wang Y., Li J., Melcher K., Xu H.E.	Destabilization of strigolactone receptor DWARF14 by binding of ligand and E3-ligase signaling effector DWARF3.	Cell Res.	25(11)	1219-36	2015		
42599	26504138	Wang L., Lu Q., Wen X., Lu C.	Enhanced Sucrose Loading Improves Rice Yield by Increasing Grain Size.	Plant Physiol.	169(4)	2848-62	2015		
42600	26517906	Lef?vre F., Baijot A., Boutry M.	Plant ABC transporters: time for biochemistry?	Biochem. Soc. Trans.	43(5)	931-6	2015		
42601	26496194	Cui L.G., Shan J.X., Shi M., Gao J.P., Lin H.X.	DCA1 Acts as a Transcriptional Co-activator of DST and Contributes to Drought and salt tolerance in Rice.	PLoS Genet.	11(10)	e1005617	2015	PRX24,DCA1,DST	prx24, Osprx24,OsDCA1, DST1, OsDST1,  OsRING161, RING161,OsDST, DLN102, OsDLN102, HST1, OsHST1
42602	26467431	Zhang S.D., Ling L.Z., Yi T.S.	Evolution and divergence of SBP-box genes in land plants.	BMC Genomics	16	787	2015		
42603	26452472	Nandy S., Zhao S., Pathak B.P., Manoharan M., Srivastava V.	Gene stacking in plant cell using recombinases for gene integration and nucleases for marker gene deletion.	BMC Biotechnol.	15	93	2015		
42604	26455463	Kubo T., Takashi T., Ashikari M., Yoshimura A., Kurata N.	Two Tightly Linked Genes at the hsa1 Locus Cause Both F1 and F2 hybrid sterility in Rice.	Mol Plant	9	221-232	2016	HSA2,HSA1B,HSA3,HSA1A	hsa2(t)*, hsa2(t), hst50,hsa1(t), s(t), hst49, OsHSA1B,hsa3(t),hsa1(t), s(t), hst49
42605	26640678	Nie Y.Y., Zhang L., Wu Y.H., Liu H.J., Mao W.W., Du J., Xiu H.L., Wu X.Y., Li X., Yan Y.W., Liu G.L., Liu H.Y., Hu S.P.	Screening of candidate genes and fine mapping of drought tolerance quantitative trait loci on chromosome 4 in rice (Oryza sativa L.) under drought stress.	Ecol Evol	5(21)	5007-15	2015		
42606	26471973	Krattinger S.G., Sucher J., Selter L.L., Chauhan H., Zhou B., Tang M., Upadhyaya N.M., Mieulet D., Guiderdoni E., Weidenbach D., Schaffrath U., Lagudah E.S., Keller B.	The wheat durable, multipathogen resistance gene Lr34 confers partial blast resistance in rice.	Plant Biotechnol. J.			2015		
42607	26498441	Zhao X., Daygon V.D., McNally K.L., Hamilton R.S., Xie F., Reinke R.F., Fitzgerald M.A.	Identification of stable QTLs causing chalk in rice grains in nine environments.	Theor. Appl. Genet.			2015		
42608	26432387	Ermawar R.A., Collins H.M., Byrt C.S., Henderson M., O'Donovan LA., Shirley N.J., Schwerdt J.G., Lahnstein J., Fincher G.B., Burton R.A.	Genetics and physiology of cell wall polysaccharides in the model C4 grass, Setaria viridis spp.	BMC Plant Biol.	15	236	2015		
42609	26479064	Chen Y., Wang X.M., Zhou L., He Y., Wang D., Qi Y.H., Jiang D.A.	Rubisco Activase Is Also a Multiple Responder to Abiotic Stresses in Rice.	PLoS ONE	10(10)	e0140934	2015		
42610	26432636	Nozoye T., Nagasaka S., Kobayashi T., Sato Y., Uozumi N., Nakanishi H., Nishizawa N.K.	The Phytosiderophore Efflux Transporter TOM2 Is Involved in Metal Transport in Rice.	J. Biol. Chem.	290(46)	27688-99	2015		
42611	26398793	Zhang J., Zou W., Li Y., Feng Y., Zhang H., Wu Z., Tu Y., Wang Y., Cai X., Peng L.	Silica distinctively affects cell wall features and lignocellulosic saccharification with large enhancement on biomass production in rice.	Plant Sci.	239	84-91	2015		
42612	26516867	Yoshida A., Ohta M., Kuwahara K., Cao M.J., Hara K., Osatomi K.	Purification and Characterization of Cathepsin B from the Muscle of Horse Mackerel Trachurus japonicus.	Mar Drugs	13(11)	6550-65	2015		
42613	26454879	Yu C., Wang L., Xu S., Zeng Y., He C., Chen C., Huang W., Zhu Y., Hu J.	Mitochondrial ORFH79 is Essential for Drought and Salt Tolerance in Rice.	Plant Cell Physiol.	56(11)	2248-58	2015		
42614	26474307	Ahmad I., Devonshire J., Mohamed R., Schultze M., Maathuis F.J.	Overexpression of the potassium channel TPKb in small vacuoles confers osmotic and drought tolerance to rice.	New Phytol.			2015		
42615	26456797	De Bruyne L., Van Poucke C., Di Mavungu JD., Zainudin N.A., Vanhaecke L., De Vleesschauwer D., Turgeon B.G., De Saeger S., H?fte M.	Comparative chemical screening and genetic analysis reveal tentoxin as a new virulence factor in Cochliobolus miyabeanus, the causal agent of brown spot disease on rice.	Mol. Plant Pathol.			2015		
42616	26463180	Lopez L., Barreiro R., Fischer M., Koch M.A.	Mining microsatellite markers from public expressed sequence tags databases for the study of threatened plants.	BMC Genomics	16	781	2015		
42617	26481460	Kang C., Liu Z.	Global identification and analysis of long non-coding RNAs in diploid strawberry Fragaria vesca during flower and fruit development.	BMC Genomics	16(1)	815	2015		
42618	26481230	Hinge V., Patil H., Nadaf A.	Comparative Characterization of Aroma Volatiles and Related Gene Expression Analysis at Vegetative and Mature Stages in Basmati and Non-Basmati Rice (Oryza sativa L.) Cultivars.	Appl. Biochem. Biotechnol.			2015		
42619	26583021	Liu M., Chu M., Ding Y., Wang S., Liu Z., Tang S., Ding C., Li G.	Exogenous spermidine alleviates oxidative damage and reduce yield loss in rice submerged at tillering stage.	Front Plant Sci	6	919	2015		
42620	26505442	Liu X., Du Y.R., Li X.H., Li X.L., Yang W.Q., Wang Y.	Breeding of a target genotype variety based on identified chalkiness marker-QTL associations in rice (Oryza sativa L.).	Genet. Mol. Res.	14(4)	12894-902	2015		
42621	26458744	Vikram P., Swamy B.P., Dixit S., Singh R., Singh B.P., Miro B., Kohli A., Henry A., Singh N.K., Kumar A.	Drought susceptibility of modern rice varieties: an effect of linkage of drought tolerance with undesirable traits.	Sci Rep	5	14799	2015		
42622	26506081	Yamamura C., Mizutani E., Okada K., Nakagawa H., Fukushima S., Tanaka A., Maeda S., Kamakura T., Yamane H., Takatsuji H., Mori M.	Diterpenoid Phytoalexin Factor, a bHLH Transcription Factor, Plays a Central Role in the Biosynthesis of Diterpenoid Phytoalexins in Rice.	Plant J.			2015		
42623	26476017	Arenhart R.A., Schunemann M., Bucker Neto L., Margis R., Wang Z.Y., Margis-Pinheiro M.	Rice ASR1 and ASR5 are complementary transcription factors regulating aluminum responsive genes.	Plant Cell Environ.			2015		
42624	26451709	Shi X., Han X., Lu T.G.	Callose synthesis during reproductive development in monocotyledonous and dicotyledonous plants.	Plant Signal Behav		0	2015		
42625	26500670	Wu Q., Li D., Li D., Liu X., Zhao X., Li X., Li S., Zhu L.	Overexpression of OsDof12 affects plant architecture in rice (Oryza sativa L.).	Front Plant Sci	6	833	2015		
42626	26515106	Sun H., Tao J., Gu P., Xu G., Zhang Y.	The role of strigolactones in root development.	Plant Signal Behav		0	2015		
42627	26474992	Wang Y., Xu J., Deng D., Ding H., Bian Y., Yin Z., Wu Y., Zhou B., Zhao Y.	A comprehensive meta-analysis of plant morphology, yield, stay-green, and virus disease resistance QTL in maize (Zea mays L.).	Planta			2015		
42628	26001286	Tousheh M., Darvishi F.Z., Miroliaei M.	A novel biological role for nsLTP2 from Oriza sativa: Potential incorporation with anticancer agents, nucleosides and their analogues.	Comput Biol Chem	58	9-18	2015		
42629	26462921	Li J., Wu Y., Li X., Wang Y., Zhang L., Li Y., Wu G.	Developing a matrix reference material for screening of transgenic rice.	Anal Bioanal Chem			2015		
42630	26457741	Nazir H., Asghar H.N., Zahir Z.A., Akhtar M.J., Saleem M.	Judicious use of kinetin to improve growth and yield of rice in nickel contaminated soil.	Int J Phytoremediation		0	2015		
42631	26460975	Deng Z., Qin L., Gao Y., Weisskopf A.R., Zhang C., Fuller D.Q.	From Early Domesticated Rice of the Middle Yangtze Basin to Millet, Rice and Wheat Agriculture: Archaeobotanical Macro-Remains from Baligang, Nanyang Basin, Central China (6700-500 BC).	PLoS ONE	10(10)	e0139885	2015		
42632	26539206	Reddy M.M., Ulaganathan K.	Draft genome sequence of Oryza sativa elite indica cultivar RP Bio-226.	Front Plant Sci	6	896	2015		
42633	26351308	Zhang X., Sun J., Cao X., Song X.	Epigenetic Mutation of RAV6 Affects leaf angle and Seed Size in Rice.	Plant Physiol.	169(3)	2118-28	2015	D61,NGA5,BRD1,NGA4,AP2/EREBP77,AP2/EREBP129,D11,WRKY123,RAVL1,AP2/EREBP96,RAV6,AP2/EREBP127,D2,NGA1,RAP2.8,_	d61*, dwf42, d61, OsBRI1, OSBRI1, BRI1, Os BRI1, Osbri1, OsBRKq1, BRKq1,OsNGA5,brd1, OsDWARF, DWARF, OsBR6ox, BR6ox, CYP85A1, CYP85A4, OsDWF, CYP85A1/OsDWARF, OsBRD1, OsCYP85A1,OsNGA4,AP2/EREBP#077, OsRAV1, RAV1, OsRAV8, RAV8,AP2/EREBP#129, OsRAV2, RAV2, OsRAV9/OsTEM1, OsRAV9/OsTEM1, OsRAV9, OsTEM1, RAV9, TEM1,d11(d8), dwf10, d8, D11/CYP724B1, d11, CYP724B1, GNS4, OsD11, PMM1, OsPMM1, PMM1/D11, NBG4, OsCPB1, CPB1, CPB1/D11,OsWRKY123, DLN183, OsDLN183,RAVL, OsRAVL1, OsNGA3, NGA3,AP2/EREBP#096, OsRAV12, RAV12, OsEREBP96, EREBP96,OsRAV6, OsNGA2, NGA2,AP2/EREBP#127, OsRAV11, RAV11, OsRAV1, RAV1,d2, dwf2, CYP90D2, D2/CYP90D2, OsD2, SMG11, OsSMG11, D2/SMG11, OsD2a, OsD2b,OsNGA1,OsRAP2.8, NGAL1-1, OsNGAL1-1,
42634	26391157	Zhao X., Zhou L., Ponce K., Ye G.	The Usefulness of Known Genes/Qtls for Grain Quality Traits in an Indica Population of Diverse Breeding Lines Tested using Association Analysis.	Rice (N Y)	8(1)	29	2015		
42635	26324258	Hu M., Li F., Liu C., Wu W.	The diversity and abundance of As(III) oxidizers on root iron plaque is critical for arsenic bioavailability to rice.	Sci Rep	5	13611	2015		
42636	26340904	Lung S.C., Chye M.L.	Deciphering the roles of acyl-CoA-binding proteins in plant cells.	Protoplasma			2015		
42637	26566840	Mohanty B., Kitazumi A., Cheung C.Y., Lakshmanan M., de Los Reyes BG., Jang I.C., Lee D.Y.	Identification of candidate network hubs involved in metabolic adjustments of rice under drought stress by integrating transcriptome data and genome-scale metabolic network.	Plant Sci.	242	224-39	2016		
42638	26358849	Yamori W., Shikanai T., Makino A.	Photosystem I cyclic electron flow via chloroplast NADH dehydrogenase-like complex performs a physiological role for photosynthesis at low light.	Sci Rep	5	13908	2015		
42639	26329877	Kurotani K., Yamanaka K., Toda Y., Ogawa D., Tanaka M., Kozawa H., Nakamura H., Hakata M., Ichikawa H., Hattori T., Takeda S.	Stress Tolerance Profiling of a Collection of Extant Salt-Tolerant Rice Varieties and Transgenic Plants Overexpressing Abiotic Stress Tolerance Genes.	Plant Cell Physiol.	56(10)	1867-76	2015		
42640	26361777	Hwang S.G., Kim D.S., Hwang J.E., Park H.M., Jang C.S.	Identification of altered metabolic pathways of gamma-irradiated rice mutant via network-based transcriptome analysis.	Genetica	143(6)	635-44	2015		
42641	26414482	Li Z., Gao Y., Zhang M., Feng J., Xiong Y.	Effects of a diet containing genetically modified rice expressing the Cry1Ab/1Ac protein (Bacillus thuringiensis toxin) on broiler chickens.	Arch Anim Nutr	69(6)	487-98	2015		
42642	26373662	Ye H., Feng J., Zhang L., Zhang J., Mispan M.S., Cao Z., Beighley D.H., Yang J., Gu X.Y.	Map-Based Cloning of Seed Dormancy1-2 Identified a Gibberellin Synthesis Gene Regulating the Development of Endosperm-Imposed Dormancy in Rice.	Plant Physiol.	169(3)	2152-65	2015		
42643	26410574	Wang J., Ye B., Yin J., Yuan C., Zhou X., Li W., He M., Wang J., Chen W., Qin P., Ma B., Wang Y., Li S., Chen X.	Characterization and fine mapping of a light-dependent leaf lesion mimic mutant 1 in rice.	Plant Physiol. Biochem.	97	44-51	2015	RLIN1	CPO, CPOX, LLM1, HEMF, OsRLIN1, OsCPO, OsCPOX, OsLLM1, OsHEMF
42644	26232644	Yang T., Wang L., Li C., Liu Y., Zhu S., Qi Y., Liu X., Lin Q., Luan S., Yu F.	Receptor protein kinase FERONIA controls leaf starch accumulation by interacting with glyceraldehyde-3-phosphate dehydrogenase.	Biochem. Biophys. Res. Commun.	465(1)	77-82	2015	DRUS1	OsCrRLK1L8, CrRLK1L8, FLR1, OsFLR1, OsMRLK11, MRLK11, OsDRUS1
42645	26366992	Liu S., Hua L., Dong S., Chen H., Zhu X., Jiang J., Zhang F., Li Y., Fang X., Chen F.	OsMAPK6, a mitogen-activated protein kinase, influences rice grain size and biomass production.	Plant J.			2015	DSG1,MADS47,D11,SG2,D61,SMG1,DWARF4, LIC,CYCD4;1,ILI1	OsMAPK6, MAPK6, OsMPK6, OsSIPK, SIPK, OsMAPK1, MAPK1, MPK1, OsMPK1, MPK6, OsDSG1,OsMADS47, OsMDP1, MDP, MDP1,d11(d8), dwf10, d8, D11/CYP724B1, d11, CYP724B1, GNS4, OsD11, PMM1, OsPMM1, PMM1/D11, NBG4, OsCPB1, CPB1, CPB1/D11,OsSERK1, SERK1, OsBAK1, BAK1, OsSERK1/OsBAK1, OsBISERK1, BISERK1, OsSerk1, OsBAK1-1, 08SG2/OsBAK1, 08SG2, OsSG2,d61*, dwf42, d61, OsBRI1, OSBRI1, BRI1, Os BRI1, Osbri1, OsBRKq1, BRKq1,OsMKK4, MKK4, OsMKK4/SMG1, OsMAPKK4, MAPKK4, OsMEK4, MEK4, OsSMG1, SMG1/OsMEK6, OsMEK6, MEK6, OsSTS, STS,OsDWARF4, osdwarf4, OsDWF4, DWF4, CYP90B2, OsCYP90B2, D4, OsD4,OsC3H46, C3H46, OsLIC, OsFLA6, FLA6,CycD2;1, CYCD2-1, Orysa;CycD2;1, OsCYCD2;1, Orysa;CycD4;1, CycD4;1, CYCD4-1, Orysa;CYCD4;1, cycD, OsCYCD4;1,,OsbHLH154, bHLH154, OsILI1
42646	26369665	Cheah B.H., Nadarajah K., Divate M.D., Wickneswari R.	Identification of four functionally important microRNA families with contrasting differential expression profiles between drought-tolerant and susceptible rice leaf at vegetative stage.	BMC Genomics	16(1)	692	2015		
42647	26597356	Mathpal B., Srivastava P.C., Shankhdhar D., Shankhdhar S.C.	Improving key enzyme activities and quality of rice under various methods of zinc application.	Physiol Mol Biol Plants	21(4)	567-72	2015		
42648	26366116	Liu X., Zhang J., Zhang C., Wang L., Chen H., Zhu Z., Tu J.	Development of photoperiod- and thermo-sensitive male sterility rice expressing transgene Bacillus thuringiensis.	Breed. Sci.	65(4)	333-9	2015		
42649	26400163	Zhang T., Marand A.P., Jiang J.	PlantDHS: a database for DNase I hypersensitive sites in plants.	Nucleic Acids Res.			2015		
42650	26213119	Lu G., Coneva V., Casaretto J.A., Ying S., Mahmood K., Liu F., Nambara E., Bi Y.M., Rothstein S.J.	OsPIN5b modulates rice (Oryza sativa) plant architecture and yield by changing auxin homeostasis, transport and distribution.	Plant J.	83(5)	913-25	2015	PIN5B	PIN5C, OsPIN5c, OsPIN5b, PIN4
42651	26385373	Zhu X., Zhong S., Chao S., Gu Y.Q., Kianian S.F., Elias E., Cai X.	Toward a better understanding of the genomic region harboring Fusarium head blight resistance QTL Qfhs.ndsu-3AS in durum wheat.	Theor. Appl. Genet.			2015		
42652	26378793	Wakabayashi K., Soga K., Hoson T., Kotake T., Yamazaki T., Higashibata A., Ishioka N., Shimazu T., Fukui K., Osada I., Kasahara H., Kamada M.	Suppression of Hydroxycinnamate Network Formation in Cell Walls of Rice Shoots Grown under Microgravity Conditions in Space.	PLoS ONE	10(9)	e0137992	2015		
42653	26416765	Song X., Duan W., Huang Z., Liu G., Wu P., Liu T., Li Y., Hou X.	Comprehensive analysis of the flowering genes in Chinese cabbage and examination of evolutionary pattern of CO-like genes in plant kingdom.	Sci Rep	5	14631	2015		
42654	26372017	Kim M.J., Kim Y.H., Song G.S., Suzuki Y., Kim M.K.	Enzymatic transglycosylation of ginsenoside Rg1 by rice seed alpha-glucosidase.	Biosci. Biotechnol. Biochem.		1-11	2015		
42655	26424157	Wang C., Yue W., Ying Y., Wang S., Secco D., Liu Y., Whelan J., Tyerman S.D., Shou H.	Rice SPX-Major Facility Superfamily3, a Vacuolar Phosphate Efflux Transporter, Is Involved in Maintaining Phosphate Homeostasis in Rice.	Plant Physiol.	169(4)	2822-31	2015		
42656	26350041	Wang Y., Feng L., Zhu Y., Li Y., Yan H., Xiang Y.	Comparative genomic analysis of the WRKY III gene family in populus, grape, arabidopsis and rice.	Biol. Direct	10	48	2015		
42657	26384983	Ranathunge K., Schreiber L., Bi Y.M., Rothstein S.J.	Ammonium-induced architectural and anatomical changes with altered suberin and lignin levels significantly change water and solute permeabilities of rice (Oryza sativa L.) roots.	Planta	243(1)	231-249	2016		
42658	26442070	Samanta S., Thakur J.K.	Importance of Mediator complex in the regulation and integration of diverse signaling pathways in plants.	Front Plant Sci	6	757	2015		
42659	26403301	Hayashi-Tsugane M., Maekawa M., Tsugane K.	A gain-of-function Bushy dwarf tiller 1 mutation in rice microRNA gene miR156d caused by insertion of the DNA transposon nDart1.	Sci Rep	5	14357	2015		
42660	25985900	Chakravarthi M., Philip A., Subramonian N.	Truncated Ubiquitin 5' Regulatory Region from Erianthus arundinaceus Drives Enhanced Transgene Expression in Heterologous Systems.	Mol. Biotechnol.	57(9)	820-35	2015		
42661	26439659	Garc?a-Cristobal J., Garc?a-Villaraco A., Ramos B., Gutierrez-Ma?ero J., Lucas J.A.	Priming of pathogenesis related-proteins and enzymes related to oxidative stress by plant growth promoting rhizobacteria on rice plants upon abiotic and biotic stress challenge.	J. Plant Physiol.	188	72-9	2015		
42662	26442025	Singh A., Kushwaha H.R., Soni P., Gupta H., Singla-Pareek SL., Pareek A.	Tissue specific and abiotic stress regulated transcription of histidine kinases in plants is also influenced by diurnal rhythm.	Front Plant Sci	6	711	2015		
42663	26361473	Jabeen N., Chaudhary Z., Gulfraz M., Rashid H., Mirza B.	Expression of Rice chitinase gene in Genetically Engineered Tomato Confers Enhanced Resistance to Fusarium Wilt and Early Blight.	Plant Pathol. J.	31(3)	252-8	2015		
42664	26415870	Oung H.M., Lin K.C., Wu T.M., Chandrika N.N., Hong C.Y.	Hygromycin B-induced cell death is partly mediated by reactive oxygen species in rice (Oryza sativa L.).	Plant Mol. Biol.	89(6)	577-88	2015		
42665	26399533	Huangwei C., Fuan N., Can C., Jihua Z., Xinqi W., Xiaojin L., Qin Y., Liming C.	Gene expression profiling of flag leaves at the booting stage in the japonica hybrid rice Huayou14 and its parental lines by microarray.	Yi Chuan	37(9)	932-8	2015		
42666	26383862	Fleck A.T., Schulze S., Hinrichs M., Specht A., Wa?mann F., Schreiber L., Schenk M.K.	Silicon Promotes Exodermal Casparian Band Formation in Si-Accumulating and Si-Excluding Species by Forming Phenol Complexes.	PLoS ONE	10(9)	e0138555	2015		
42667	26523132	Park D., Kim D., Jang G., Lim J., Shin Y.J., Kim J., Seo M.S., Park S.H., Kim J.K., Kwon T.H., Choi I.Y.	Efficiency to Discovery Transgenic Loci in GM Rice Using Next Generation Sequencing Whole Genome Re-sequencing.	Genomics Inform	13(3)	81-5	2015		
42668	26421293	Wischnitzki E., Sehr E.M., Hansel-Hohl K., Berenyi M., Burg K., Fluch S.	How to Isolate a Plant's Hypomethylome in One Shot.	Biomed Res Int	2015	570568	2015		
42669	26442055	Hu W., Zuo J., Hou X., Yan Y., Wei Y., Liu J., Li M., Xu B., Jin Z.	The auxin response factor gene family in banana: genome-wide identification and expression analyses during development, ripening, and abiotic stress.	Front Plant Sci	6	742	2015		
42670	26362270	Wu J., Feng F., Lian X., Teng X., Wei H., Yu H., Xie W., Yan M., Fan P., Li Y., Ma X., Liu H., Yu S., Wang G., Zhou F., Luo L., Mei H.	Genome-wide Association Study (GWAS) of mesocotyl elongation based on re-sequencing approach in rice.	BMC Plant Biol.	15	218	2015		
42671	26398683	Ma X., Ma J., Zhai H., Xin P., Chu J., Qiao Y., Han L.	CHR729 Is a CHD3 Protein That Controls Seedling Development in Rice.	PLoS ONE	10(9)	e0138934	2015		
42672	26338659	Furuta T., Komeda N., Asano K., Uehara K., Gamuyao R., Angeles-Shim RB., Nagai K., Doi K., Wang D.R., Yasui H., Yoshimura A., Wu J., McCouch S.R., Ashikari M.	Convergent Loss of Awn in Two Cultivated Rice Species Oryza sativa and Oryza glaberrima Is Caused by Mutations in Different Loci.	G3 (Bethesda)	5(11)	2267-74	2015	AN1,RAE2 ,RAE3	An-1, OsbHLH093, RAE1, An-1/RAE1, RAE1/An-1, OsRAE1, OsAn-1, OgRAE1,OsEPFL1, EPFL1, GAD1, OsGAD1, OsRAE2, GLA, OsGLA, GAD1/RAE2, OgRAE2,
42673	26392263	Zhao G., Shi J., Liang W., Xue F., Luo Q., Zhu L., Qu G., Chen M., Schreiber L., Zhang D.	Two ATP Binding Cassette G Transporters, Rice ATP Binding Cassette G26 and ATP Binding Cassette G15, Collaboratively Regulate Rice Male Reproduction.	Plant Physiol.	169(3)	2064-79	2015	ABCG26,ABCG15	OsABCG26,OsABCG15, PDA, PDA1, OsABCG15/PDA1
42674	26363148	Xie P.P., Deng J.W., Zhang H.M., Ma Y.H., Cao D.J., Ma R.X., Liu R.J., Liu C., Liang Y.G.	Effects of cadmium on bioaccumulation and biochemical stress response in rice (Oryza sativa L.).	Ecotoxicol. Environ. Saf.	122	392-8	2015		
42675	26419216	Salah S.M., Yajing G., Dongdong C., Jie L., Aamir N., Qijuan H., Weimin H., Mingyu N., Jin H.	Seed priming with polyethylene glycol regulating the physiological and molecular mechanism in rice (Oryza sativa L.) under nano-ZnO stress.	Sci Rep	5	14278	2015		
42676	26440094	Zhang F., Tang J., Zhou Y., Luo X., Xie J.	Characterization and fine mapping of NGP4c(t), a novel gene controlling the number of grains per panicle in rice.	J. Genet.	94(3)	513-7	2015		
42677	26341416	Watanabe K.A., Homayouni A., Tufano T., Lopez J., Ringler P., Rushton P., Shen Q.J.	Tiling Assembly: a new tool for reference annotation-independent transcript assembly and novel gene identification by RNA-sequencing.	DNA Res.	22(5)	319-29	2015		
42678	26363880	Cho J.G., Cha B.J., Min Lee S., Shrestha S., Jeong R.H., Sung Lee D., Kim Y.C., Lee D.G., Kang H.C., Kim J., Baek N.I.	Diterpenes from the roots of Oryza sativa L. and their inhibition activity on NO production in LPS-stimulated RAW264.7 macrophages.	Chem. Biodivers.	12(9)	1356-64	2015		
42679	26332833	Gordy J.W., Leonard B.R., Blouin D., Davis J.A., Stout M.J.	Comparative Effectiveness of Potential Elicitors of Plant Resistance against Spodoptera frugiperda (J. E. Smith) (Lepidoptera: Noctuidae) in Four Crop Plants.	PLoS ONE	10(9)	e0136689	2015		
42680	26353816	Glover N.M., Daron J., Pingault L., Vandepoele K., Paux E., Feuillet C., Choulet F.	Small-scale gene duplications played a major role in the recent evolution of wheat chromosome 3B.	Genome Biol.	16	188	2015		
42681	26348400	Sagor G.H., Inoue M., Kim D.W., Kojima S., Niitsu M., Berberich T., Kusano T.	The polyamine oxidase from lycophyte Selaginella lepidophylla (SelPAO5), unlike that of angiosperms, back-converts thermospermine to norspermidine.	FEBS Lett.	589(20 Pt B)	3071-8	2015		
42682	26483837	Xu W., Di C., Zhou S., Liu J., Li L., Liu F., Yang X., Ling Y., Su Z.	Rice transcriptome analysis to identify possible herbicide quinclorac detoxification genes.	Front Genet	6	306	2015		
42683	26408090	Chen Z.C., Ma J.F.	Improving nitrogen use efficiency in rice through enhancing root nitrate uptake mediated by a nitrate transporter, NRT1.1B.	J Genet Genomics	42(9)	463-5	2015		
42684	26416238	Xu X., Liu W., Zhong J., Luo L., Liu C., Luo S., Chen L.	Binding interaction between rice glutelin and amylose: Hydrophobic interaction and conformational changes.	Int. J. Biol. Macromol.	81	942-50	2015		
42685	26566849	Ellur R.K., Khanna A., Yadav A., Pathania S., Rajashekara H., Singh V.K., Gopala Krishnan S., Bhowmick P.K., Nagarajan M., Vinod K.K., Prakash G., Mondal K.K., Singh N.K., Vinod Prabhu K., Singh A.K.	Improvement of Basmati rice varieties for resistance to blast and bacterial blight diseases using marker assisted backcross breeding.	Plant Sci.	242	330-41	2016		
42686	26382720	Ding L., Gao L., Liu W., Wang M., Gu M., Ren B., Xu G., Shen Q., Guo S.	Aquaporin plays an important role in mediating chloroplastic CO2 concentration under high-N supply in rice (Oryza sativa) plants.	Physiol Plant			2015		
42687	26350634	Mega R., Meguro-Maoka A., Endo A., Shimosaka E., Murayama S., Nambara E., Seo M., Kanno Y., Abrams S.R., Sato Y.	Sustained low abscisic acid levels increase seedling vigor under cold stress in rice (Oryza sativa L.).	Sci Rep	5	13819	2015		
42688	26419335	Kakei Y., Mochida K., Sakurai T., Yoshida T., Shinozaki K., Shimada Y.	Transcriptome analysis of hormone-induced gene expression in Brachypodium distachyon.	Sci Rep	5	14476	2015		
42689	26340891	Kaikavoosi K., Kad T.D., Zanan R.L., Nadaf A.B.	2-Acetyl-1-Pyrroline Augmentation in Scented indica Rice (Oryza sativa L.) Varieties Through Delta(1)-Pyrroline-5-carboxylate synthetase (P5CS) Gene Transformation.	Appl. Biochem. Biotechnol.	177(7)	1466-79	2015		
42690	26351309	Yang X., Zhao X.G., Li C.Q., Liu J., Qiu Z.J., Dong Y., Wang Y.Z.	Distinct Regulatory Changes Underlying Differential Expression of TEOSINTE BRANCHED1-CYCLOIDEA-PROLIFERATING CELL FACTOR Genes Associated with Petal Variations in Zygomorphic Flowers of Petrocosmea spp. of the Family Gesneriaceae.	Plant Physiol.	169(3)	2138-51	2015		
42691	26334612	Peng Y., Hu Y., Mao B., Xiang H., Shao Y., Pan Y., Sheng X., Li Y., Ni X., Xia Y., Zhang G., Yuan L., Quan Z., Zhao B.	Genetic analysis for rice grain quality traits in the YVB stable variant line using RAD-seq.	Mol. Genet. Genomics			2015		
42692	26366118	Shim J., Torollo G., Angeles-Shim RB., Cabunagan R.C., Choi I.R., Yeo U.S., Ha W.G.	Rice tungro spherical virus resistance into photoperiod-insensitive japonica rice by marker-assisted selection.	Breed. Sci.	65(4)	345-51	2015		
42693	26386366	Alamgir K.M., Hojo Y., Christeller J.T., Fukumoto K., Isshiki R., Shinya T., Baldwin I.T., Galis I.	Systematic analysis of rice (Oryza sativa) metabolic responses to herbivory.	Plant Cell Environ.			2015		
42694	26345976	Li W.C., Zhang L., Wang J., Wang D., Wang T.X., Duan C.X.	Effects of silicon on seed setting rate of rice intersubspecific hybrids.	Genet. Mol. Res.	14(3)	10359-64	2015		
42695	26566831	Kurokawa Y., Noda T., Yamagata Y., Angeles-Shim R., Sunohara H., Uehara K., Furuta T., Nagai K., Jena K.K., Yasui H., Yoshimura A., Ashikari M., Doi K.	Construction of a versatile SNP array for pyramiding useful genes of rice.	Plant Sci.	242	131-9	2016		
42696	26403240	Navarro-Reig M., Jaumot J., Garc?a-Reiriz A., Tauler R.	Evaluation of changes induced in rice metabolome by Cd and Cu exposure using LC-MS with XCMS and MCR-ALS data analysis strategies.	Anal Bioanal Chem	407(29)	8835-47	2015		
42697	26335702	Hong H., Liu Y., Zhang H., Xiao J., Li X., Wang S.	Small RNAs and Gene Network in a Durable disease resistance Gene--Mediated Defense Responses in Rice.	PLoS ONE	10(9)	e0137360	2015		
42698	26483798	Das G., Rao G.J.	Molecular marker assisted gene stacking for biotic and abiotic stress resistance genes in an elite rice cultivar.	Front Plant Sci	6	698	2015		
42699	26407850	Kan C.C., Chung T.Y., Juo Y.A., Hsieh M.H.	Glutamine rapidly induces the expression of key transcription factor genes involved in nitrogen and stress responses in rice roots.	BMC Genomics	16(1)	731	2015		
42700	26366117	Horibata A., Kakikubo Y., Kato T.	Distorted genetic segregation of the transposon mPing at the long arm of chromosome 12 in rice.	Breed. Sci.	65(4)	340-4	2015		
42701	26369652	Li Y., Hallerman E.M., Liu Q., Wu K., Peng Y.	The development and status of Bt rice in China.	Plant Biotechnol. J.			2015		
42702	26484259	Kumar M., Kim S.R., Sharma P.C., Pareek A.	Simple and efficient way to detect small polymorphic bands in plants.	Genom Data	5	218-22	2015		
42703	26566836	Wei F.J., Tsai Y.C., Wu H.P., Huang L.T., Chen Y.C., Chen Y.F., Wu C.C., Tseng Y.T., Hsing Y.I.	Both Hd1 and Ehd1 are important for artificial selection of flowering time in cultivated rice.	Plant Sci.	242	187-94	2016		
42704	26566846	Bimpong I.K., Manneh B., Sock M., Diaw F., Amoah N.K., Ismail A.M., Gregorio G., Singh R.K., Wopereis M.	Improving salt tolerance of lowland rice cultivar 'Rassi' through marker-aided backcross breeding in West Africa.	Plant Sci.	242	288-99	2016		
42705	26356220	Talukdar P., Douglas A., Price A.H., Norton G.J.	Biallelic and Genome Wide Association Mapping of Germanium Tolerant Loci in Rice (Oryza sativa L.).	PLoS ONE	10(9)	e0137577	2015		
42706	26378525	Nam M.H., Bang E., Kwon T.Y., Kim Y., Kim E.H., Cho K., Park W.J., Kim B.G., Yoon I.S.	Metabolite Profiling of Diverse Rice Germplasm and Identification of Conserved Metabolic Markers of Rice Roots in Response to Long-Term Mild Salinity Stress.	Int J Mol Sci	16(9)	21959-74	2015		
42707	26395408	Qian D., Tian L., Qu L.	Proteomic analysis of endoplasmic reticulum stress responses in rice seeds.	Sci Rep	5	14255	2015		
42708	17984200	Raffaele S., S?bastien Mongrand, Gamas P., Niebel A., Ott T.	Genome-wide annotation of remorins, a plant-specific protein family: evolutionary and functional perspectives.	Plant Physiol.	145(3)	593-600	2007	REM1.1,REM4.2,REM5.1,REM0.1,REM1.5,REM1.2,REM1.4,REM0.2,REM5.2,REM6.3,REM6.2,REM1.3,REM6.1,REM6.5,LP1,REM4.3,REM4.1,GSD1,REM6.4	OsREM1.1,OsREM4.2,OsREM5.1,OsREM0.1,OsREM1.5,OsREM1.2,OsREM1.4,OsREM0.2,OsREM5.2,OsREM6.3,OsREM6.2,OsREM1.3,OsREM6.1,OsREM6.5,OsREM5.3, REM5.3, OsLP1,OsREM4.3,OsREM4.1,OsREM6.6, REM6.6, OsGSD1,OsREM6.4
42709	20807878	Khurana P., Jessica L Henty, Huang S., Andrew M Staiger, Blanchoin L., Christopher J Staiger	Arabidopsis VILLIN1 and VILLIN3 have overlapping and distinct activities in actin bundle formation and turnover.	Plant Cell	22(8)	2727-48	2010	_,_,_,_,_	VLN1, OsVLN1, Os VLN1,VLN2, OsVLN2, Os VLN2,VLN4, OsVLN4, Os VLN4,VLN5, OsVLN5, Os VLN5,VLN3, OsVLN3, Os VLN3
42710	22431979	Rai A., Suprasanna P., Stanislaus F D'Souza, Kumar V.	Membrane topology and predicted RNA-binding function of the 'early responsive to dehydration (ERD4)' plant protein.	PLoS ONE	7(3)	e32658	2012	ERD4	OsOSCA3.1, OSCA3.1, OsIOSCA3.1, OsERD4, OsDDP7, DDP7, OsDDP7.1, OsDDP7.2
42711	15002667	Yuan H., Chen X., Zhu L., He G.	Isolation and characterization of a novel rice gene encoding a putative insect-inducible protein homologous to wheat Wir1.	J. Plant Physiol.	161(1)	79-85	2004	_	bphi008a, BpHi008A, OsRALF-22, OsRALF22, RALF-22, RALF22
42712	23826294	Xu J., Audenaert K., Hofte M., De Vleesschauwer D.	Abscisic Acid Promotes Susceptibility to the Rice Leaf Blight Pathogen Xanthomonas oryzae pv oryzae by Suppressing Salicylic Acid-Mediated Defenses.	PLoS ONE	8(6)	e67413	2013	WRKY45,NCED1,DHN1,NH1,WRKY13,LEA22,NCED3	OsWRKY45, OsWRKY45-1, OsWRKY45-2, WRKY45-1, WRKY45-2,OSNCED1, OsNCED-1, OsNCED3, OsNced3, NCED3, OsNCED9, NCED9,LIP9, OsLIP9, lip9, DHN1, DIP1, OsDip1, OsLEA23, OsDhn1, COR410, OsLEA23/DIP1, DIP1/OsLEA23,OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2, DLN5, OsDLN5,  OsBTBA1, BTBA1,OsWRKY13,OsLEA22, RAB25, OsRab16, Rab16, OsABA45, ABA45,OSNCED3, OsNCED-3, OsNCED3, OsNCED3a, NCED3a, OsNCED4, NCED4, OsNECD2, OsNCED2b, NCED2b 
42713	16942608	Luk?s Synek, Schlager N., Marek Eli?s, Micha?l Quentin, Marie-Theres Hauser, Viktor Z?rsk?	AtEXO70A1, a member of a family of putative exocyst subunits specifically expanded in land plants, is important for polar growth and plant development.	Plant J.	48(1)	54-72	2006	EXO70D2,EXO70FX2,EXO70C2,EXO70X6,EXO70D1,EXO70FX5,EXO70FX14,EXO70F4,EXO70A4,EXO70E1,SR1,EXO70FX1,EXO70FX3,EXO70X7,EXO70B1,EXO70X2,EXO70F5,EXO70X5,EXO70I1,EXO70H3B,EXO70H3A,EXO70FX11,EXO70F3,EXO70F2,EXO70FX4,EXO70FX13,EXO70A2,EXO70F1,EXO70C1,EXO70X4,EXO70FX10,RLS2,EXO70H1,EXO70FX16,EXO70FX7,EXO70G2,EXO70B3,EXO70FX9,EXO70FX6,EXO70H2,EXO70G1,EXO70X3,EXO70A3,EXO70FX12,EXO70FX15,EXO70B2	OsEXO70D2, OsExo70D2, OrysaD2_Exo70,OsEXO70FX2, OsExo70FX2, OrysaFX2_Exo70,OsEXO70C2, OsExo70C2, OrysaC2_Exo70,OsEXO70X6, OsExo70X6, OrysaX6_Exo70,OsEXO70D1, OsExo70D1, OrysaD1_Exo70,OsEXO70FX5, OsExo70FX5, OrysaFX5_Exo70,OsEXO70FX14, OsExo70FX14, OrysaFX14_Exo70,OsEXO70F4, OsExo70F4, OrysaF4_Exo70,OsEXO70A4, OsExo70A4, OrysaA4_Exo70,OsEXO70E1, OsExo70E1,EXO70FX8, OsEXO70FX8, OsExo70FX8, OrysaFX8_Exo70, OsSR1,OsEXO70FX1, OsExo70FX1, OrysaFX1_Exo70, FX1, OsFX1,OsEXO70FX3, OsExo70FX3, OrysaFX3_Exo70,OsEXO70X7, OsExo70X7, OrysaX7_Exo70,OsEXO70B1, OsExo70B1, OrysaB1_Exo70,OsEXO70X2, OsExo70X2, OrysaX2_Exo70,OsEXO70F5, OsExo70F5, OrysaF5_Exo70,OsEXO70X5, OsExo70X5, OrysaX5_Exo70,OsEXO70I1, OsExo70I1, OrysaI1_Exo70,OsEXO70H3b, EXO70H3b, OsExo70H3b, OrysaH3b_Exo70,OsEXO70H3a, EXO70H3a, OrysaH3a_Exo70, OsEXO70H3, EXO70H3,OsEXO70FX11, OsExo70FX11, OrysaFX11_Exo70,OsEXO70F3, OsExo70F3, OrysaF3_Exo70, OsExo70-F3, Exo70-F3,OsEXO70F2, OsExo70F2, OrysaF2_Exo70, OsExo70-F2, Exo70-F2,OsEXO70FX4, OsExo70FX4, OrysaFX4_Exo70, OsEXO70J1, EXO70J1,OsEXO70FX13, OsExo70FX13, OrysaFX13_Exo70,OsEXO70A2, OsExo70A2, OrysaA2_Exo70,OsEXO70F1, OsExo70F1, OrysaF1_Exo70,OsEXO70C1, OsExo70C1, OrysaC1_Exo70, OrysaE1_Exo70,OsEXO70X4, OsExo70X4, OrysaX4_Exo70, OsEXO70FX17, EXO70FX17,OsEXO70FX10, OsExo70FX10, OrysaFX10_Exo70,OsEXO70A1, OsExo70A1, EXO70A1, OrysaA1_Exo70,OsEXO70H1a, EXO70H1a, OsExo70H1a, OsEXO70H1b, EXO70H1b, OrysaH1_Exo70,OsEXO70FX16, OsExo70FX16, OrysaFX16_Exo70,OsEXO70FX7, OsExo70FX7, OrysaFX7_Exo70,OsEXO70G2, OsExo70G2, OrysaG2_Exo70,OsEXO70B3, OsExo70B3, OrysaB3_Exo70,OsEXO70FX9, OsExo70FX9, OrysaFX9_Exo70,OsEXO70FX6, OsExo70FX6, OrysaFX6_Exo70,OsEXO70H2, OsExo70H2, OrysaH2_Exo70,OsEXO70G1, OsExo70G1, OrysaG1_Exo70,OsEXO70X3, OsExo70X3, OrysaX3_Exo70, OsEXO70FX16, EXO70FX16,OsEXO70A3, OsExo70A3, OrysaA3_Exo70,OsEXO70FX12, OsExo70FX12, OrysaFX12_Exo70,OsEXO70FX15, OsExo70FX15, OrysaFX15_Exo70,OsEXO70B2, OsExo70B2, OrysaB2_Exo70
42714	22826714	Fatima Cvr?kov?, Grunt M., Bezvoda R., Michal H?la, Kulich I., Rawat A., Viktor Z?rsk?	Evolution of the land plant exocyst complexes.	Front Plant Sci	3	159	2012	EXO70D1,EXO70FX5,EXO70D2,EXO70FX13,EXO70X1,EXO70FX6,EXO70FX15,EXO70FX12,EXO70B1,EXO70H3A,EXO70FX3,EXO70I1,EXO70F3,EXO70X5,EXO70F1,EXO70FX10,EXO70FX1,EXO70F5,EXO70X7,EXO70FX16,EXO70FX11,EXO70B2,EXO70X6,EXO70H3B,EXO70F2,EXO70FX4,SR1,RLS2,EXO70B3,EXO70X3,EXO70C1,EXO70FX2,EXO70H2,EXO70H1,EXO70FX7,EXO70F4,EXO70X2,EXO70C2,EXO70G2,EXO70G1,EXO70A4,EXO70A2,EXO70FX14,_,EXO70A3,EXO70X4,EXO70FX9	OsEXO70D1, OsExo70D1, OrysaD1_Exo70,OsEXO70FX5, OsExo70FX5, OrysaFX5_Exo70,OsEXO70D2, OsExo70D2, OrysaD2_Exo70,OsEXO70FX13, OsExo70FX13, OrysaFX13_Exo70,OsEXO70X1, OsExo70X1, OrysaX1_Exo70, OsEXO70E1, OsExo70E1, EXO70E1,OsEXO70FX6, OsExo70FX6, OrysaFX6_Exo70,OsEXO70FX15, OsExo70FX15, OrysaFX15_Exo70,OsEXO70FX12, OsExo70FX12, OrysaFX12_Exo70,OsEXO70B1, OsExo70B1, OrysaB1_Exo70,OsEXO70H3a, EXO70H3a, OrysaH3a_Exo70, OsEXO70H3, EXO70H3,OsEXO70FX3, OsExo70FX3, OrysaFX3_Exo70,OsEXO70I1, OsExo70I1, OrysaI1_Exo70,OsEXO70F3, OsExo70F3, OrysaF3_Exo70, OsExo70-F3, Exo70-F3,OsEXO70X5, OsExo70X5, OrysaX5_Exo70,OsEXO70F1, OsExo70F1, OrysaF1_Exo70,OsEXO70FX10, OsExo70FX10, OrysaFX10_Exo70,OsEXO70FX1, OsExo70FX1, OrysaFX1_Exo70, FX1, OsFX1,OsEXO70F5, OsExo70F5, OrysaF5_Exo70,OsEXO70X7, OsExo70X7, OrysaX7_Exo70,OsEXO70FX16, OsExo70FX16, OrysaFX16_Exo70,OsEXO70FX11, OsExo70FX11, OrysaFX11_Exo70,OsEXO70B2, OsExo70B2, OrysaB2_Exo70,OsEXO70X6, OsExo70X6, OrysaX6_Exo70,OsEXO70H3b, EXO70H3b, OsExo70H3b, OrysaH3b_Exo70,OsEXO70F2, OsExo70F2, OrysaF2_Exo70, OsExo70-F2, Exo70-F2,OsEXO70FX4, OsExo70FX4, OrysaFX4_Exo70, OsEXO70J1, EXO70J1,EXO70FX8, OsEXO70FX8, OsExo70FX8, OrysaFX8_Exo70, OsSR1,OsEXO70A1, OsExo70A1, EXO70A1, OrysaA1_Exo70,OsEXO70B3, OsExo70B3, OrysaB3_Exo70,OsEXO70X3, OsExo70X3, OrysaX3_Exo70, OsEXO70FX16, EXO70FX16,OsEXO70C1, OsExo70C1, OrysaC1_Exo70, OrysaE1_Exo70,OsEXO70FX2, OsExo70FX2, OrysaFX2_Exo70,OsEXO70H2, OsExo70H2, OrysaH2_Exo70,OsEXO70H1a, EXO70H1a, OsExo70H1a, OsEXO70H1b, EXO70H1b, OrysaH1_Exo70,OsEXO70FX7, OsExo70FX7, OrysaFX7_Exo70,OsEXO70F4, OsExo70F4, OrysaF4_Exo70,OsEXO70X2, OsExo70X2, OrysaX2_Exo70,OsEXO70C2, OsExo70C2, OrysaC2_Exo70,OsEXO70G2, OsExo70G2, OrysaG2_Exo70,OsEXO70G1, OsExo70G1, OrysaG1_Exo70,OsEXO70A4, OsExo70A4, OrysaA4_Exo70,OsEXO70A2, OsExo70A2, OrysaA2_Exo70,OsEXO70FX14, OsExo70FX14, OrysaFX14_Exo70,OsSTA254, STA254 OsSEC3B, SEC3B ,OsEXO70A3, OsExo70A3, OrysaA3_Exo70,OsEXO70X4, OsExo70X4, OrysaX4_Exo70, OsEXO70FX17, EXO70FX17,OsEXO70FX9, OsExo70FX9, OrysaFX9_Exo70
42715	0	Maria Gay C. Carrillo, Paul H. Goodwin, Jan E. Leach, Leung H., Casiana M. Vera Cruz	Phylogenomic Relationships of Rice Oxalate Oxidases to the Cupin Superfamily and Their Association with Disease Resistance QTL	Rice	2	67-79	2009	OXO3,OXO4,OXO1,OXO2	OsOxO3, OsGLP3-5, GLP3-5, OsCDP3.8, CDP3.8,OsOxO4, OsGLP3-6, GLP3-6, OsCDP3.9, CDP3.9,OsOxO1, OsGLP3-3, GLP3-3, OsCDP3.6, CDP3.6,Osoxo4, OsOxO2, OsGLP3-4, GLP3-4, OsCDP3.7, CDP3.7
42716	23275578	Petroni K., Roderick W Kumimoto, Gnesutta N., Calvenzani V., Fornari M., Tonelli C., Ben F Holt, Mantovani R.	The promiscuous life of plant NUCLEAR FACTOR Y transcription factors.	Plant Cell	24(12)	4777-92	2012	HAP2G,HAP3B,HAP2A,HAP3C,HAP2B,HAP2E,HAP2I,HAP5D,HAP2J,LEC1,HAP2F,HAP3K,HAP3J,HAP3I,HAP5E,HAP2D,HAP3A,HAP3F,HAP5F,HAP5B,HAP3G,HAP5C,HAP2H,HAP2C,HAP3D,HAP5A,HAP5G,HD5	OsHAP2G, NF-YA, CBF-B, NF-YA6, OsNF-YA6, NFYA6,OsHAP3B, OsNF-YB-3, NFYB3, OsNF-YB4, NF-YB4, NFYB4, OsHAP3C, HAP3C,OsHAP2A, NF-YA, CBF-B, NF-YA7, OsNF-YA7, NFYA7,OsHAP3C, OsNF-YB-4, NFYB4, OsNF-YB3, NF-YB3, NFYB3, OsHAP3B, HAP3B,OsHAP2B, NF-YA, CBF-B, NF-YA9, OsNF-YA9, NFYA9,OsHAP2E, NF-YA, CBF-B, NF-YA2, OsNF-YA2, NFYA2,OsHAP2I, NF-YA, CBF-B, NF-YA8, OsNF-YA8, OsEnS-136, NFYA8,OsHAP5D, NF-YC, CBF-C, OsNF-YC6, Os-NF-YC6, NF-YC6, NFYC6,OsHAP2J, NF-YA, CBF-B, NF-YA5, OsNF-YA5, NFYA5,OsHAP3E, HAP3E, OsLEC1/OsHAP3E, OsLEC1, LEC1, OsNF-YB7, NF-YB7, NFYB7, L1L ,OsHAP2F, NF-YA, CBF-B, NF-YA10, OsNF-YA10, NFYA10,OsHAP3K/OsNF-YB1, OsHAP3K, OsNF-YB1, NF-YB1, nf-yb1, OsLEC1, OsNF-YB-1, NFYB1, OsEnS-41,OsHAP3J, NF-YB, CBF-A, OsNF-YB5, NF-YB5, NF-YB5,OsHAP3I, NF-YB, CBF-A, NF-YB8, OsNF-YB8, NFYB8,OsHAP5E, NF-YC, CBF-C, OsNF-YC7, Os-NF-YC7, NF-YC7, NFYC7,OsHAP2D, NF-YA, CBF-B, NF-YA4, OsNF-YA4, NFYA4,OsHAP3A,OsNF-YB-2, NFYB2, NF-YB2,OsHAP3F, NF-YB, CBF-A, NF-YB10, OsNF-YB10, NFYB10,OsHAP5F, NF-YC, CBF-C, OsNF-YC5, Os-NF-YC5, NF-YC5, NFYC5,OsHAP5B, NF-YC, CBF-C, OsNF-YC4, Os-NF-YC4, NF-YC4, NFYC4, OsNF-YC4-3, NF-YC4-3,OsHAP3G, NF-YB, CBF-A, OsNF-YB6, NF-YB6, NFYB6,OsHAP5C, NF-YC, CBF-C, OsNF-YC2, Os-NF-YC2, NF-YC2, NFYC2, OsNF-YC4-1, NF-YC4-1,OsHAP2H, NF-YA, CBF-B, NF-YA3, OsNF-YA3, NFYA3,OsHAP2C, NF-YA, CBF-B, NF-YA1, OsNF-YA1, NFYA1,OsHAP3D, OsEnS-83, OsNF-YB9, NF-YB9, NFYB9, OsLEC1A, LEC1A,OsHAP5A, NF-YC, CBF-C, OsNF-YC1, Os-NF-YC1, NF-YC1, NFYC1 , OsNF-YC4-2, NF-YC4-2,OsHAP5G, NF-YC, CBF-C, OsNF-YC3, Os-NF-YC3, NF-YC3, NFYC3,Hd5(t)*, Hd5, qHD5, HAP3H, OsHAP3H, NF-YB, CBF-A, DTH8 , qHD5(t)*, Ghd8, Ghd8/DTH8, Lhd1, NF-YB11, OsNF-YB11, NFYB11, LH8, DTH8/Ghd8, RH8, DTH8/Ghd8/LHD1, CAR8, DTH8/Ghd8/ OsHAP3H, EF8, OsEF8
42717	0	Jia-Fu Jiang, Yun-Yuan Xu, Chong K.	Overexpression of OsJAC1, a Lectin Gene, Suppresses the Coleoptile and Stem Elongation in Rice	J Integr Plant Biol	49(2)	230-237	2007	JAC1	OsJAC1, DIR54, OsDIR54, OsjDIR54, OsJRL29, JRL29
42718	9744098	A Moons, R Valcke, M Van Montagu	Low-oxygen stress and water deficit induce cytosolic pyruvate orthophosphate dikinase (PPDK) expression in roots of rice, a C3 plant.	Plant J.	15(1)	89-98	1998	_,FLO4	osppdka, ppdka,FLO4-4, flo4, flo4-2, flo4-3, ppdk, OsPPDK, PPDK1, CPDK1, PPDKB, OsPPDKB, cyOsPPDKB, OsPBDK, PBDK, osppdkb, PPD, cyPPDK, chPPDKB, chOsPPDKB
42719	23220941	Chen C., Chen H., Shan J.X., Zhu M.Z., Shi M., Gao J.P., Lin H.X.	Genetic and Physiological Analysis of a Novel Type of Interspecific Hybrid Weakness in Rice.	Mol Plant			2013	HWI1	25L1
42720	18507773	Koide Y., Onishi K., Nishimoto D., Akhil Ranjan Baruah, Kanazawa A., SANO Y.	Sex-independent transmission ratio distortion system responsible for reproductive barriers between Asian and African rice species.	New Phytol.	179(3)	888-900	2008	S1	
42721	15084732	Jos? C Reyes, M Isabel Muro-Pastor, Francisco J Florencio	The GATA family of transcription factors in Arabidopsis and rice.	Plant Physiol.	134(4)	1718-32	2004	GATA16,GATA22,GATA6,GATA8,GATA19,GATA27,GATA9,NL1,GATA4,GATA17,GATA25,GATA24,GATA18 ,GATA7,GATA23,GATA3,GATA14,GATA20,GATA5,GATA1 ,GATA10,CGA1,GATA26,GATA2,GATA28,GATA12,GATA21,GATA13	OsGATA16, OsGNC, GNC,OsGATA22,OsGATA6, OsGATA1, GATA1,OsGATA8, OsGATA14, GATA14, OsGATA8a, OsGATA8b, DLN10, OsDLN10,OsTIFY1b, TIFY1B, OsCCT15, CCT15, OsGATA19, OsGATA19a, OsGATA19b,OsGATA27,OsGATA9,nl1, OsGATA15, GATA15, OsNL1,OsGATA4,OsTIFY2a, TIFY2a, OsCCT04, OsCCT4, CCT04, CCT4, OsGATA17, OsGATA17a, OsGATA17b,OsGATA25,OsGATA24,OsTIFY1A, TIFY1A, OsCCT13, OsGATA18, OsGATA18a, OsGATA18b,OsGATA7,OsGATA23, OsGATA23a, OsGATA23b,OsGATA3,OsGATA14,OsTIFY2b, TIFY2B, OsCCT24, CCT24, OsGATA20,OsGATA5,OsGATA1, OsGATA6, GATA6,OsGATA10,Cga1, OsCga1, OsCGA1, OsGATA11, GATA11,OsGATA26,OsGATA2, OsGATA2a, OsGATA2b,OsGATA28,OsGATA12,OsGATA21,OsGATA13
42722	18676621	Sudo E., Itouga M., Kayo Yoshida-Hatanaka, Ono Y., Sakakibara H.	Gene expression and sensitivity in response to copper stress in rice leaves.	J. Exp. Bot.	59(12)	3465-74	2008	CHT5,_,POX22.3,GH5BG,RBBI3-1,_,_,CHI7,MTI1A,RBBI2-2,_,PAL1,_,LOX11,PRX117,_,_,C4H2,_,_,ASMT1,ASMT2,GSTU42,PRX16,CCR21,JAC1,PAL1,LTP1	Cht5, OsChia4a, OsChitIVa, Chia4a, ChitIVa, CHIT3, OsCHIT3,DIP3, XIP, OsHI-XIP, OsXIP2, XIP2,POX22.3, OSPER, OsPOX, POX, Pir3, prx111, POX22, OsPOX1, POX1, OsPOX22.3, OsPR9, PR9,OsGH5BG,RBBI3-1, OsBBTI4, BBTI4, IBP1.1, RBBTI4, APIP4, OsAPIP4,prx61, OsPRX61,OsPAL07, OsPAL, PAL07, OsPAL6, PAL6, PAL1, OsPAL7, PAL7,CHI, OsCHI, OsCHI7, OsCHIL2, CHIL2,MT1a, OsMT1a, OsMT1e, OsMT-I-1a, MT-I-1a, OsMT1e-P, MTa, rgMT, OsMT-1, rgMT-1,RBBI2-2,OsLTP2.4, OsLtpII.4,OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6,OsLTPG7, OsLTPg7,OsLOX11, OsRCI-1, RCI-1, OsBphi262, OsLOX12, OsLOX2.2, LOX2.2, LOX2.1, OsLOX2.1, OsLOX14, LOX14,prx117, OsPRX117, OsPRX47, PRX47,prx109, POX-2,ROMT-17, ROMT17, CCoAOMT1,OsC4H, OsC4HL, C4H, OsC4H2,prx71, Osprx71,OsLTP1.14, OsLtpI.14,ZRP4, OMT, ASMT, OsASMT, OsASMT1, ASMT1, OsASMT13, OsCOMT19, COMT19,ZRP4, OsASMT2, OsASMT15,OsGSTU42,prx16, OsPRX16, OsPOD1, POD1,OsCCR21 ,OsJAC1, DIR54, OsDIR54, OsjDIR54, OsJRL29, JRL29,OsPAL, Pal1*, Pal1, PAL, Pal_1, PalI, PAL2, OsPAL01, PAL01, OSPAL, CP-1, GP-1, OsPAL1, PAL3, OsPAL3,Ltp1, RLTP1
42723	15605239	Luo Q., Zhou K., Zhao X., Zeng Q., Xia H., Zhai W., Xu J., Wu X., Yang H., Zhu L.	Identification and fine mapping of a mutant gene for palealess spikelet in rice.	Planta	221(2)	222-30	2005		
42724	23603966	Yanagisawa S.	Characterization of a nitrate-inducible transcriptional repressor NIGT1 provides new insights into DNA recognition by the GARP family proteins.	Plant Signal Behav	8(6)	e24447	2013	NIGT1	OsNIGT1, HINGE6, OsHINGE6
42725	17284836	Li S., Wook-Dong Kim, Kaneko S., Prukutty A Prema, Nakajima M., Kobayashi H.	Expression of rice (Oryza sativa L. var. Nipponbare) alpha-galactosidase genes in Escherichia coli and characterization.	Biosci. Biotechnol. Biochem.	71(2)	520-6	2007	_,_,_	alpha-Gal II,alpha-Gal III,alphaGa1, alpha-Gal I
42726	16041362	Vollbrecht E., Patricia S Springer, Goh L., Edward S Buckler, Martienssen R.	Architecture of floral branch systems in maize and related grasses.	Nature	436(7054)	1119-26	2005	_,SRO,_,_	,OsSRO,,
42727	16132843	Bo-Ra Kim, Soo-Un Kim, Yung-Jin Chang	Differential expression of three 1-deoxy-D: -xylulose-5-phosphate synthase genes in rice.	Biotechnol. Lett.	27(14)	997-1001	2005	DXS2,DXS3,DXS1	OsDXS2, dxs2,OsDXS, OsDXS3, dxs3, DXS2, OsDXS2,CLA1, OsDXS1, dxs1, OsDXS, DXS, OsTKL1, TKL1
42728	10945348	N Nishikubo, T Araki, S Kajita, K Kuroda, H Kitano, Y Katayama	Specific accumulation of polysaccharide-linked hydroxycinnamoyl esters in the cell walls of irregularly shaped and collapsed internode parenchyma cells of the dwarf rice mutant Fukei 71.	Plant Cell Physiol.	41(6)	776-84	2000	D12	d12(d50), dwf11, d50, d12, d32, F71, DMT9
42729	11577193	W Sakamoto, T Ohmori, K Kageyama, C Miyazaki, A Saito, M Murata, K Noda, M Maekawa	The Purple leaf (Pl) locus of rice: the Pl(w) allele has a complex organization and includes two genes encoding basic helix-loop-helix proteins involved in anthocyanin biosynthesis.	Plant Cell Physiol.	42(9)	982-91	2001	B2,PL,PS	OsbHLH016, Kala4, OsKala4, OSB2, OsB2,Pl, Pl1,Ra*, bhlh13, OsbHLH013, OsbHLH13, Ra, OSB1, Ra1, OsGL3A, GL3A, OsB2, OsMYC7, MYC7, OsPs, Ps, OsHLH1, HLH1
42730	0	Wang C., Wen G., Lin X., Liu X., Zhang D.	Identification and fine mapping of the new bacterial blight resistance gene, Xa31(t), in rice	Eur J Plant Pathol	123	235-240	2009	XA31	Xa31
42731	0	Choung-Ke ZHENG, Chun-Lian Wang, Yuan-Jie YU, Yun-Tao LIANG, Kai-Jun ZHAO	Identification and Molecular Mapping of Xa32(t), a Novel Resistance Gene for Bacterial Blight (Xanthomonas oryzae pv. oryzae) in Rice	Acta Agronomica Sinica	35(7)	1173-1180	2009	XA32	Xa32
42732	0	Yutaka SATO, Asuka NISHIMURA, Tomoaki SAKAMOTO, Motoyuki ASHIKARI, Makoto MATSUOKA	Isolation and characterization of a cDNA encoding an orthologue of ROUGH SHEATH 2 (OsRS2) from rice	Plant Biotechnology	19(1)	11-18	2002	RS2	OsMYB91, MYB91, OsRS2, OsMYB125, MYB125 
42733	18945025	A Ghesqui?re, L Albar, M Lorieux, N Ahmadi, D Fargette, N Huang, S R McCouch, J L Notteghem	A major quantitative trait locus for rice yellow mottle virus resistance maps to a cluster of blast resistance genes on chromosome 12.	Phytopathology	87(12)	1243-9	1997		
42734	11874462	Shibahara T., Kawasaki H., Hirano H.	Identification of the 19S regulatory particle subunits from the rice 26S proteasome.	Eur. J. Biochem.	269(5)	1474-83	2002	RPT6,RPT2B,RPN1B,RPT1B,RPN2A,RPN9A,RPT5B,RPT4A,RPT3,TBP2,RPN6,S5A,RPN7,RPN9B,RPN11,RPN8,RPT1A,SPL43,RPN12,RPN3,RPN1A,RPN5,RPN2B,RPT4B	OsRpt6, Rpt6,OsRpt2b, Rpt2b,OsRpn1b, Rpn1b,OsRpt1b, Rpt1b,OsRpn2a, Rpn2a,OsRpn9a, Rpn9a,OsRpt5b, Rpt5b,OsRpt4a, Rpt4a,OsRpt3, Rpt3,TBPOs-2, OsTBP2, OsRpt2a, Rpt2a, OsRPT2a,OsRpn6, Rpn6,OsS5a, S5a, OsRpn10, Rpn10, OsvWA9, vWA9,OsRpn7, Rpn7 ,OsRpn9b, Rpn9b, RPN9a,OsRpn11, Rpn11,OsRpn8, Rpn8,OsRpt1a, Rpt1a ,TBP1, TBPOs-1, OsTBP1, OsRpt5a, Rpt5a, OsRPT5A, OsSPL43,OsRpn12, Rpn12,OsRpn3, Rpn3,OsRpn1a, Rpn1a,OsRpn5, Rpn5,OsRpn2b, Rpn2b,OsRpt4b, Rpt4b
42735	12582914	Wissuwa M., Wegner J., Ae N., Yano M.	Substitution mapping of Pup1: a major QTL increasing phosphorus uptake of rice from a phosphorus-deficient soil.	Theor. Appl. Genet.	105(6-7)	890-897	2002	PSTOL1	Pstol1, OsPSTOL1, OsPSTOL, PSTOL, Pstol1/OsPupK46-2, OsPupK46-2, Pup1, PHO
42736	16077027	Sunkar R, Girke T, Zhu JK.	Identification and characterization of endogenous small interfering RNAs from rice.	Nucleic Acids Res.	33(14)	4443-54.	2005	P87-G9,P100-D3,P67-B5,P40-D12,P52-C8,P56-E5,P5-C5,P4-D6,P85-D8,P40-H12,P79-E7,P84-D12,P81-B6,P79-E1,P60-F7,P92-A3,P31-G9,P87-C2,P49-E4,P87-C5,P84-H3,P33-D12,P6-A9,P63-G7,P96-B3,P83-C9,P97-E3,P15-E7,P97-B5,P101-A9,P108-F5,P97-E9,P104-F8,P100-E1,P5-D6,P20-G5,P56-B2,P9-F11,P104-A10,P84-H4,P105-D8,P79-D15,P29-A12,P88-A11,P85-B12,P65-B8,P97-F12,P96-H6,P106-E12,P95-E5,P5-B6,P101-H2,P96-A3,P76-B12,P86-E8,P83-D5,P101-G7,P107-E1,P91-E4,P104-F1,P84-H5,P100-B10,P91-E11,P102-F3,P85-B1,P50-B5,P70-D1,P84-H6,P104-G7,P106-G11,P80-B3,P81-B3,P28-E3,P108-B7,P71-G7,P86-A3,P66-B12,P98-B9,P104-A3,P104-C7,P105-G11,P99-B3,P104-C8,P85-B2,P102-G9,P93-C6,P77-B10,P98-G6,P46-C11,P85-F2,P106-B5,P81-G4,P99-H3,P85-B9,P82-F7,P99-D11,P99-F3,P109-E3,P99-B4,P77-D6,P108-A5,P76-D11,P81-C7,P108-G3,P77-F8,P15-A5,P97-D1,P15-D7,P107-H12,P101-C11,P107-E2,P30-G4,P84-F11,P108-D1,P96-B9,P91-D9,P102-C12,P72-H3,P76-G8,P72-F7,P71-H12,P30-G6,P84-C2,P77-C11,P96-F7,P34-A10,P98-A8,P98-G5,P72-E12,P63-E1,P76-H3,P72-H5,P101-B12,P88-A6,P104-E2,P56-H4,P101-B7,P77-G8,P72-A8,P108-H5,P105-H8,P81-F4,P109-D12,P91-H7,P33-G4,P103-F8,P93-D6,P90-B8,P96-C9,P91-C7,P94-E8,P94-G1,P89-D4,P90-A5,P90-B6,P97-A1,P103-H2,P105-E10,P56-D5,P8-G3,P91-A5,P90-B9,P91-A11,P107-H11,P99-C8,P94-A5,P83-B2,P90-A12,P86-G10,P8-E2,P92-C3,P108-D3,P83-H4,P96-E12,P108-F10,P88-B4,P102-D7,P7-A4,P107-H3,P98-D2,P98-G12,P107-B10,P89-F12,P79-E11,P8-C12,P89-H6,P100-F11,P9-G1,P107-F1,P88-F10,P97-B2,P89-E2,P89-H1,P107-F10,P89-G12,P103-B2,P108-B2,P89-G8,P108-A7,P35-D10,P91-A1,P107-G2,P38-B7,P91-F12,P100-H11,P102-A5,P98-A9,P4-G9,P109-A11,P75-D3,P106-F8,P89-E12,P89-B12,P33-A2,P87-B1,P89-C3,P95-D5,P108-H10,P97-F4,P93-G6,P99-H8,P99-A2,P1-02,P79-H4,P72-E1,P102-E6,P89-B2,P75-C1,P96-C4,P85-F8,P86-D6,P88-F11,P88-H6,P87-A3,P95-D12,P86-E3,P86-F9,P86-H10,P78-E8,P99-G11,P87-H6,P77-C12,P107-A9,P7-E5,P88-C3,P85-C7,P83-G5,P103-G3,P93-H6,P72-G12,P83-H10,P77-H6,P109-C6,P83-A5,P89-F6,P102-F11,P81-G1,P94-D12,P89-E6,P8-F8,P83-D4,P92-A9,P78-C6,P68-H2,P93-A5,P17-F4,P79-B1,P102-F10,P89-H4,P82-E5,P30-A8,P61-A1,P18-F10,P16-G8,P109-F3,P1-B06,P16-C3,P15-F8,P1-C04,P26-B8,P63-A8,P91-D8,P81-H7,P33-H10	null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null
42738	14678782	Shibahara T., Kawasaki H., Hirano H.	Mass spectrometric analysis of expression of ATPase subunits encoded by duplicated genes in the 19S regulatory particle of rice 26S proteasome.	Arch. Biochem. Biophys.	421(1)	34-41	2004	RPT3,RPT2B,RPT6,RPT4B,RPT1B,RPT4A,SPL43,RPT1A,RPT5B,TBP2	OsRpt3, Rpt3,OsRpt2b, Rpt2b,OsRpt6, Rpt6,OsRpt4b, Rpt4b,OsRpt1b, Rpt1b,OsRpt4a, Rpt4a,TBP1, TBPOs-1, OsTBP1, OsRpt5a, Rpt5a, OsRPT5A, OsSPL43,OsRpt1a, Rpt1a ,OsRpt5b, Rpt5b,TBPOs-2, OsTBP2, OsRpt2a, Rpt2a, OsRPT2a
42739	24203021	H Hasegawa, T Katagiri, S Ida, O Yatou, M Ichii	Characterization of a rice (Oryza sativa L.) mutant deficient in the heme domain of nitrate reductase.	Theor. Appl. Genet.	84(1-2)	6-9	1992	NADH-NR	
42740	24241451	J C Glaszmann	Isozymes and classification of Asian rice varieties.	Theor. Appl. Genet.	74(1)	21-30	1987		
42741	0	Pradhan S.B., Jachuck P.J.	Development of new cytoplasmic source of male sterile lines in rice for shallow lowland	Euphytica	111	43-46	2000	[CMS-MIZ4]	[cms-Miz4]*, [cms-Miz4]
42742	0	J. Ni J., WU P., Senadhira D., Huang N.	Mapping QTLs for phosphorus deficiency tolerance in rice (Oryza sativa L.)	Theor. Appl. Genet.	97	1361-1369	1998	PSTOL1	Pstol1, OsPSTOL1, OsPSTOL, PSTOL, Pstol1/OsPupK46-2, OsPupK46-2, Pup1, PHO
42743	0	MatthiasWissuwa, Ae N.	Further characterization of two QTLs that increase phosphorus uptake of rice (Oryza sativa L.) under phosphorus deficiency	Plant Soil	237	275-286	2001	PSTOL1	Pstol1, OsPSTOL1, OsPSTOL, PSTOL, Pstol1/OsPupK46-2, OsPupK46-2, Pup1, PHO
42744	0	WISSUWA M., Ae N.	Genotypic variation for tolerance to phosphorus de?ciency in rice and the potential for its exploitation in rice improvement	Plant Breeding	120	43-48	2001	PSTOL1	Pstol1, OsPSTOL1, OsPSTOL, PSTOL, Pstol1/OsPupK46-2, OsPupK46-2, Pup1, PHO
42745	0	Suzuki Y., SANO Y., Hiro-Yuki Hirano	Isolation and characterization of a rice mutant insensitive to cool temperatures on amylose synthesis	Euphytica	123	95-100	2002	WX1,COI	wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx,
42746	0	Rutger J.N.	Induction of photoperiod sensitive genetic male steriles for use in hybrid rice seed production	Euphytica	120	399-400	2001	_,_,_	Ms,Ms,ms
42747	0	Reddy O.U.K., Siddiq E.A., Sarma N.P., Ali J., Hussain A.J., Nimmakayala P., Ramasamy P., Pammi S., Reddy A.S.	Genetic analysis of temperature-sensitive male sterilty in rice	Theor. Appl. Genet.	100	794-801	2000	_	tms4(t), tms4
42748	0	Nakamura Y., Umemoto T., Takahata Y., Komae K., Amano E., Satoh H.	Changes in structure of starch and enzyme activities affected by sugary mutations in developing rice endosperm. Possible role of starch debranching enzyme (R-enzyme) in amylopectin biosynthesis	Physiol Plant	97(3)	491-498	1996	SBE3,PUL,SBE4,SBE1,SUG	SBEIII*, SBEIII, Sbe3, RBE3, QEIIa, QEIIA, BEIIb, BEIIB, SBEIIb, OsBEIIb, sbe3, SBE III, OsSBEIIb, SBEIIb,OsPUL, SDBE, OsPUL3, RE,RBE4, OsSBE4, BEIIa, QEIIb, BEIIA, OsBEIIa,sbe1, Rbe1. Sbe1, sbe1*(QEI), RBE1, BEI, SBE I, QEI, OsBEI, BE1, OsSBE1, OsSBEI, SBEI,sug(su), su, sug1, su1, su-1
42749	0	Gao L., Ge S., Hong D., Lin R., Tao G., Xu Z.	Allozyme variation and conservation genetics of common wild rice (Oryza rufipogon Griff.) in Yunnan, China	Euphytica	124	273-281	2002		
42750	0	Latha R., Thiyagarajan K., Senthilvel S.	Genetics, fertility behaviour and molecular marker analysis of a new TGMS line, TS6, in rice	Plant Breeding	123	235-240	2004	_	TGMS
42751	0	Ni J., Colowit P.M., Oster J.J., Xu K., Mackill D.J.	Molecular markers linked to stem rot resistance in rice	Theor. Appl. Genet.	102	511-516	2001	_,_	,
42752	0	Nakamura Y., Kubo A., Shimamune T., Matsuda T., Harada K., Satoh H.	Correlation between activities of starch debranching enzyme and alpha-polyglucan structure in endosperms of sugary-1 mutants of rice	The Plant Journal	12(1)	143-153	1997	SUG,PUL	sug(su), su, sug1, su1, su-1,OsPUL, SDBE, OsPUL3, RE
42753	0	Sakae ARASE, Chang-Min ZHAO, Kazuya AKIMITSU, Mikihiro YAMAMOTO, Masahiko ICHII	A Recessive Lesion Mimic Mutant of Rice with Elevated Resistance to Fungal Pathogens	Journal of General Plant Pathology	66(2)	109-116	2000	_	
42754	0	Rutger J.N., Mackill D.J.	Application of Mendelian genetics in rice breeding	Rice Genetics, IV. IRRI, Manila, Philippines		27-38	2001	SD1,SUB1,XA4,SE1,PL,BPH2,EUI1,SE3,PITA,BPH1	sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2, OsPHQ1, OsPHq1, PHq1,Sub1, Sub1(Sub1A,Sub1B,Sub1C), Sub1A, Sub1B, Sub1C, Sub1,Xa4, Xa4(Xa4a), Xa-4, Xa4-a, WAK, wak, xa4,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, OsHd1,  Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,Pl, Pl1,bph2,eui1, GA16,17ox, CYP714D1, EUI, CYP714D1/EUI, OsEUI, LG5, OsLG5,Se3(t), Se3,Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30, Trx30,Bph1
42755	0	Nakamura Y, Umemoto T, Takahata Y, Amano E	Characteristics and roles of key enzymes associated with starch biosynthesis in rice endosperm	Gamma Field Symp.	31	25-44	1992	SUG,SBE1,SBE3,SBE4,PUL	sug(su), su, sug1, su1, su-1,sbe1, Rbe1. Sbe1, sbe1*(QEI), RBE1, BEI, SBE I, QEI, OsBEI, BE1, OsSBE1, OsSBEI, SBEI,SBEIII*, SBEIII, Sbe3, RBE3, QEIIa, QEIIA, BEIIb, BEIIB, SBEIIb, OsBEIIb, sbe3, SBE III, OsSBEIIb, SBEIIb,RBE4, OsSBE4, BEIIa, QEIIb, BEIIA, OsBEIIa,OsPUL, SDBE, OsPUL3, RE
42756	0	Kawahigashi-H, Ozawa-K, Ohkawa-Y	RFLP analysis of Koshihikari isogenic lines with high ability of regeneration	Breeding. Res.	3(suppl. 2)	10	2001		
42757	0	Arimura-M, Taketa-S, Ma-J-F, Wu-G-F, Tamai-K, Ichii-M	Molecular mapping of a gene for Si uptake in rice	Breeding Res.	4(Suppl. 1)	73	2002	LSI1	lsi1, NIP2-1, OsNIP2;1, NIP2;1, OsLsi1, lsi(t), OsNIP2.1/OsLsi1/OsSIIT1, OsNIP2.1, NIP2.1
42758	12481095	Jian Feng Ma, Tamai K., Ichii M., Guo Feng Wu	A rice mutant defective in Si uptake.	Plant Physiol.	130(4)	2111-7	2002	LSI1	lsi1, NIP2-1, OsNIP2;1, NIP2;1, OsLsi1, lsi(t), OsNIP2.1/OsLsi1/OsSIIT1, OsNIP2.1, NIP2.1
42759	0	Ueda-Y, Takemoto-Y, Sato-M, Kumamaru-T, Tanaka-K, Ohtsubo-K, Ogawa-M, Satoh-H	Histochemical analysis of PBs in endosperm cells of developing seed for a novel 57H mutant, glup7	Breeding Res.	6(Suppl.2)	180	2004	GLUP7	Glup7
42760	0	Mori-M, Tomita-C, Hasegawa-M, Hayashi-N, Sugimoto-K, Sekimoto-H, Hirochika-H, Kikuchi-S	Isolation of a lesion mimic mutant and a short grain mutant by rice activation tagging and analyses of causative genes	Breeding Res.	6(Suppl.2)	102	2004	SG1,LMM1	OsSG1, Sg1,Lmm1, OsACT1
42761	0	Horiuchi-Y, Onishi-K, Sano-Y	A semi-dwarf gene detected from an annual form of wild rice	Breeding Res.	6(Suppl.2)	174	2004		
42762	0	Suzuki-Y, Hirasawa-H, Ikeda-R, Ise-K, Sato-H, Ishikawa-T	Genetic analysis of a rice mutant, "KT95" on which morphological change of leaf blade from normal to narrow and rolled occurred on specific leaf position	Breeding Res.	6(Suppl.2)	265	2004	_	
42763	0	Shimizu-A, Kato-K, Shishido-R, Nomura-K, Ikehashi-H	Phosphorus- deficiency-induced root elongation in rice 2. Confirmation of detected QTL regions using chromosome segment substitution lines	Breeding Res.	6(Suppl.2)	313	2004		
42764	0	Nakamura-Y	Some properties of starch debranching enzymes and their possible role in amylopectin biosynthesis	Plant Science	121	1-18	1996	SBE1,SBE3,SUG,PUL	sbe1, Rbe1. Sbe1, sbe1*(QEI), RBE1, BEI, SBE I, QEI, OsBEI, BE1, OsSBE1, OsSBEI, SBEI,SBEIII*, SBEIII, Sbe3, RBE3, QEIIa, QEIIA, BEIIb, BEIIB, SBEIIb, OsBEIIb, sbe3, SBE III, OsSBEIIb, SBEIIb,sug(su), su, sug1, su1, su-1,OsPUL, SDBE, OsPUL3, RE
42765	10517831	Kubo A., Fujita N., Harada K., Matsuda T., Satoh H., Nakamura Y.	The starch-debranching enzymes isoamylase and pullulanase are both involved in amylopectin biosynthesis in rice endosperm	Plant Physiol.	121(2)	399-410	1999	SUG,PUL,PHS8	sug(su), su, sug1, su1, su-1,OsPUL, SDBE, OsPUL3, RE,ISA1, OsISA1, ISA, OsISA, PHS8/ISA1, OsPHS8, ISA I, OsISA I, ISAI, OsISAI
42766	10634784	X Ye, S Al-Babili, A Kl?ti, J Zhang, P Lucca, P Beyer, I Potrykus	Engineering the provitamin A (beta-carotene) biosynthetic pathway into (carotenoid-free) rice endosperm.	Science	287(5451)	303-5	2000		
42767	11206853	L Gao, W Chen, W Jiang, S Ge, D Hong, X Wang	Genetic erosion in northern marginal population of the common wild rice Oryza rufipogon Griff. and its conservation, revealed by the change of population genetic structure.	Hereditas	133(1)	47-53	2000		
42768	0	Zhao-C-M, Hasegawa-H, Ichii-M	A Chlorate Resistant Mutant of Rice (Oryza sativa L.) with Normal Nitrate Uptake and nitrate reductase Activity	Breed. Sci.	50(1)	9-15	2000	_	
42769	0	Hasegawa H, Yatou O, Katagiri T, Ichii M	Screening for nitrate reductase-deficient mutants in rice (Oryza sativa L.)	Japanese Society of Breeding	41(1)	95-101	1991	_,NADH-NR	,
42770	0	L.-z. Gao, G. De-y. Hong S.	Allozyme variation and population genetic structure of common wild rice Oryza rufipogon Griff. in China	Theor. Appl. Genet.	101	494-502	2000		
42771	0	Li Z., Rutger J.N.	Geographic distribution and multilocus organization of isozyme variation of rice (Oryza sativa L.)	Theor. Appl. Genet.	101	379-387	2000		
42772	0	Ahmadi-N, Albar-L, Pressoir-G, Pinel-A, Fargette-D, Ghesquiere-A	Genetic basis and mapping of the resistance to Rice yellow mottle virus. III. Analysis of QTL efficiency in introgressed progenies confirmed the hypothesis of complementary epistasis between two resistance QTLs	Theoretical and Applied Genetics	103	1084-1092	2001		
42773	0	Li-R, Pandey-M-P	Complex nature of inheritance of thermosensitive genic male sterility (TGMS) in rice	Chinese Rice Res. Newslett.	9(3)	6-7	2001	_,_,_	tms7,tms5,tms6
42774	10887680	S G Li, Y Q Ma, W M Wang, G Q Liu, K D Zhou, L H Zhu	[Molecular tagging of a new recessive gene for late heading in a rice cultivar 8987].	Yi Chuan Xue Bao	27(2)	133-8	2000	_	lf-3(t), lf-3, lf3
42775	0	Gao-D, Xiang-Y, Sun-L, Lu-Z	Tagging RAPD markers to a bacterial blight resistance gene in rice	Chinese Rice Res. Newslett.	9(3)	2	2001	XA25	Xa25(t), Xa25*, Xa25, Xa-25(t)
42776	0	Nakamura Y., Takeichi T., Kawaguchi K., Yamanouchi H.	Purification of two forms of starch branching enzyme (Q-enzyme) from developing rice endosperm	Physiol Plant	84(3)	329-335	1992	SBE3,SBE4,SBE1	SBEIII*, SBEIII, Sbe3, RBE3, QEIIa, QEIIA, BEIIb, BEIIB, SBEIIb, OsBEIIb, sbe3, SBE III, OsSBEIIb, SBEIIb,RBE4, OsSBE4, BEIIa, QEIIb, BEIIA, OsBEIIa,sbe1, Rbe1. Sbe1, sbe1*(QEI), RBE1, BEI, SBE I, QEI, OsBEI, BE1, OsSBE1, OsSBEI, SBEI
42777	0	Uga-Y, Nonoue-Y, Liang-Z-W, Lin-H, ano-M	Advanced backcross QTL analysis of loci associated with heading date in an extremely late heading variety Nona Bokra	Breeding Res.	6(Suppl.2)	269	2004		
42778	0	Pradhan-S-B, Jachuck-P-J	Genetics of fertility restoration of elite lines for different cytoplasmic male sterile sources in rice	Oryza (Cuttack)	36(4)	374-376	1999	[CMS-WA],[CMS-KALINGA-I]	[cms-WA],[cms-Kalinga-I]*, [cms-Kalinga-I]
42779	27172610	Kubo T., Yoshimura A., Kurata N.	pollen Killer Gene S35 Function Requires Interaction with an Activator That Maps Close to S24, Another pollen Killer Gene in Rice.	G3 (Bethesda)	6(5)	1459-68	2016	S35,S31,INK,S24,EFS	,S31-gi,S31-un,S31-n,S31(t),,S24(t), S24(t)*, Sb, F5-Du,
42780	19282622	Kubo T., Yamagata Y., Eguchi M., Yoshimura A.	A novel epistatic interaction at two loci causing hybrid male sterility in an inter-subspecific cross of rice (Oryza sativa L.).	Genes Genet. Syst.	83(6)	443-53	2008	S24,S35	S24(t), S24(t)*, Sb, F5-Du,
42781	0	LI Wentao, ZENG Ruizhen, ZHANG Zemin, DING Xiahua, ZHANG guiquan	Fine mapping of locus S-b for F1 pollen sterility in rice (Oryza sativa L.)	Chinese Science Bulletin	51(6)	675-680	2006	SB	Sb*, S-b, Hst17, S24, F5-Du
42782	0	SHI LeiGang, LIU XianDong, LIU Bo, ZHAO XingJuan, WANG Lan, LI JinQuan, LU YongGen	Identifying neutral allele Sb at pollen sterility loci in cultivated rice with Oryza rufipogon origin	Chinese Science Bulletin	54(20)	3813-3821	2009	SB	Sb*, S-b, Hst17, S24, F5-Du
42783	11480174	X J Deng, K D Zhou, R D Li, P Li, G S Huang, Z Chun	[Genetic analysis of dominant earliness of rice genic male sterile line 6442S-7].	Yi Chuan Xue Bao	28(7)	628-34	2001	SUEFCD	Su-Ef-cd(t), Su-Ef-cd
42784	0	Rao-O-P, Misro-B	Linkage studies in rice (Oryza sativa L.). lX. Inheritance and interrelationships of genes governing panicle type, grain arrangement and other characters	Indian J. Agric. Sci.	38	690-695	1968	BA*,PD,BB*	Ba*, B(a),Pd, Pd(a), Pd(b),Bb*, B(b)
42785	17031545	Rouhier N., Christina Vieira Dos Santos, Tarrago L., Rey P.	Plant methionine sulfoxide reductase A and B multigenic families.	Photosyn. Res.	89(2-3)	247-62	2006	MSRB3,MSRB5,MSRA4,MSRA5,MSRA2.1,MSRB1,MSRA2.2	OsMSRB3,OsMSR1, MSR1, OsMSRB5,OsMSRA4, OsMSRA4.1, MSRA4.1,OsMSRA5,OsMSRA2.1,OsMSRB1, OsMSRB1.1, OsMSRB1.2, MSRB1.1,OsMSRA2.2
42786	27071131	Canturk F., Karaman M., Selby C.P., Kemp M.G., Kulaksiz-Erkmen G., Hu J., Li W., Lindsey-Boltz LA., Sancar A.	Nucleotide excision repair by dual incisions in plants.	Proc. Natl. Acad. Sci. U.S.A.	113(17)	4706-10	2016		
42787	27081183	Singh P., Sinha A.K.	A Positive Feedback Loop Governed by SUB1A1 Interaction with MITOGEN ACTIVATED PROTEIN KINASE 3 Imparts submergence tolerance in Rice.	Plant Cell			2016	SLRL1,SMG1,SLR1,SUB1A,MSRMK2,_	OsSLRL1, OsGAI, OsSLRL, OsGRAS-1, OsGRAS1, GAI, SLRL, GRAS-1, GRAS1,OsMKK4, MKK4, OsMKK4/SMG1, OsMAPKK4, MAPKK4, OsMEK4, MEK4, OsSMG1, SMG1/OsMEK6, OsMEK6, MEK6, OsSTS, STS,slr1-1, slr1, slr, GAI, OsGAI, OsSLR1, Os SLR1, OsRGA1, OsGRAS-18, OsGRAS-18, GRAS-18, GRAS18, SLR-1,Sub1A, Sub1A-1, Sub1A-2, OsSUB1A,OsMSRMK2, OsMAPK5, OsMAP1, OsMPK3, OsBIMK1, OsMAPK2, MPK5, BIMK1, MAPK2, MAPK5, MPK3, OsMPK5, OsMAPK3, OsMAPK5b, MAPK3,OsDPK1, DPK1, MKKK32, OsMKKK32, MAPKKK32
42788	27121815	Callaway E.	Devastating wheat fungus appears in Asia for first time.	Nature	532(7600)	421-2	2016		
42789	27081181	Li S., Zhao Y., Zhao Z., Wu X., Sun L., Liu Q., Wu Y.	Crystal structure of the GRAS domain of SCARECROW-LIKE 7 in Oryza sativa.	Plant Cell			2016	WG3	OsSCRL, SCRL, Os-SCL7, OsSCL7, SCL7, OsGRAS-19, OsGRAS19, GRAS-19, GRAS19, OsGRAS18, GRAS18 
42790	27071313	Huang C.K., Sie Y.S., Chen Y.F., Huang T.S., Lu C.A.	Two highly similar DEAD box proteins, OsRH2 and OsRH34, homologous to eukaryotic initiation factor 4AIII, play roles of the exon junction complex in regulating growth and development in rice.	BMC Plant Biol.	16(1)	84	2016	_,GAMYB,_,_,_,SD1,UDT1	OsRH2, RH2, eIF4A-3,OsGAMYB, GAM1, OsGAMyb, Os-MYBGA, Os GAMYB, OsMYBGA, MYBGA, Os2R_MYB15, 2R_MYB15 ,OsRH34, RH34,OsY14b, Y14b,OsMAGO1, MAGO1,sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2, OsPHQ1, OsPHq1, PHq1,Udt1, bHLH164, OsUDT1, OsbHLH164 
42791	27208230	Wu L., Ren D., Hu S., Li G., Dong G., Jiang L., Hu X., Ye W., Cui Y., Zhu L., Hu J., Zhang G., Gao Z., Zeng D., Qian Q., Guo L.	Mutation of OsNaPRT1 in the NAD Salvage Pathway Leads to Withered Leaf Tips in Rice.	Plant Physiol.			2016	KAT1,AGA1,LTS1 ,NaPRT2,AMTR1,SRT701,SIR2B,NIC	OsI57, I57, OsKAT1, OsACAA1, ACAA1,Osh69, h69, OsAGA1, OsRS6, RS6,OsNaPRT1, OsNaPRT1/LTS1, NaPRT1,OsNaPRT2,Osh36, OsH36, H36, OsAMTR1,osSRT701, OsSIRT701, OsSRT1, SRT1, OS-SIR2,Sir2, OsSIR2b, OsSir2b, OsSRT2, SRT2, DLN255, OsDLN255, OsSRT702, SRT702,OsNIC
42792	27208309	Araus V., Vidal E.A., Puelma T., Alamos S., Mieulet D., Guiderdoni E., Guti?rrez RA.	Members of BTB gene family regulate negatively nitrate uptake and nitrogen use efficiency in Arabidopsis thaliana and Oryza sativa.	Plant Physiol.			2016	BT	OsBT,  OsBTBZ2, BTBZ2
42793	27181944	Zhang H., Lu Y., Zhao Y., Zhou D.X.	OsSRT1 is involved in rice seed development through regulation of starch metabolism gene expression.	Plant Sci.	248	28-36	2016	HDAC6,HDAC10,RSR1,SRT701	OsHDAC6, OsHDA706, HDA706,OsHDAC10, HDA714, OsHDA714, ASDAC, OsASDAC,AP2/EREBP#090, AP2/EREBP90, OsTOE1, TOE1, qHD5, AP2-1, AP2/EREBP/RSR1, OsRSR1, DLN130, DLN130a, DLN130b, OsDLN130, OsDLN130a, OsDLN130b,osSRT701, OsSIRT701, OsSRT1, SRT1, OS-SIR2
42794	27121038	Byeon Y., Lee H.Y., Back K.	Cloning and characterization of the serotonin N-acetyltransferase-2 gene (SNAT2) in rice (Oryza sativa).	J. Pineal Res.			2016	SNAT2,SNAT1	OsSNAT2 ,OsSNAT1, OsSNAT, SNAT, OsGNAT2, GNAT2
42795	27061371	Begum M.C., Islam M.S., Islam M., Amin R., Parvez M.S., Kabir A.H.	Biochemical and molecular responses underlying differential arsenic tolerance in rice (Oryza sativa L.).	Plant Physiol. Biochem.	104	266-277	2016	PT4,PT8,PCS1,ACR2.1,PHO1;2	OsPT4, PHT1-4, OsPht1;4, PHT1-2, PHT1;4, OsPHT1;4,OsPT8, PHT1-8, OsPht1;8, Pht1;8, PHT1;8, OsPHT1;8,OsPCS1, OsPCS2, PCS2, OsPCS15, PCS15,CDC25.1, OsACR2.1, OsStr20, STR20,OsPHO1;2, PHO1.2, OsPHO1.2, PHO1
42796	27107174	Li S., Gao F., Xie K., Zeng X., Cao Y., Zeng J., He Z., Ren Y., Li W., Deng Q., Wang S., Zheng A., Zhu J., Liu H., Wang L., Li P.	The OsmiR396c-OsGRF4-OsGIF1 regulatory module determines grain size.and yield in Rice.	Plant Biotechnol. J.			2016	GIF1,MIR396C,GS2	OsGIF1,miR396c, osa-miR396c, osa-MIR396c, osa-miR396c-3p, osa-miR396c-5p, OsmiR396c,OsGRF4, GRF4, GS2/OsGRF4, PT2, GLW2, GS2/GL2, LGS1, OsLGS1
42797	27118216	Hwang S.G., Kim J.J., Lim S.D., Park Y.C., Moon J.C., Jang C.S.	Molecular dissection of Oryza sativa salt-induced RING finger protein 1 (OsSIRP1): possible involvement in the sensitivity response to salinity stress.	Physiol Plant			2016	ZOS10-06,PHD29,AIR2,APIP10,PPS,_,_,RDCP2,ZFP1 ,EBR1,HIP1,_,BRCA1,HIRP1,_,_,RING317,DLN146,DLN198,RING86,DLN24,_,_,_,_,_,_,_,_,_,_,_,PIE1,_,SADR1,_,_,_,_,_,_,DLN108,DLN115,_	OsZOS10-06, OsRFP, OsRING134, RING134, OsHAKAI, HAKAI,OsRFP, OsPHD29,  OsRING12, RING12,OsRFP, RFP, OsAIR2 ,  OsRING271, RING271,OsAPIP10,  OsRING239, RING239,OsWD40-55, OsCOP1, COP1, YEL, OsYEL, OsPPS, COP1-1, OsCOP1-1,  OsRING347, RING347,OsRFP,OsRFP ,  OsRING218, RING218,OsRDCP2,  OsRING319, RING319,OsRFP, OsZFP1, UCIP2, OsUCIP2,  OsRING145, RING145,OsRFP, RFP, OsEBR1,  OsRING398, RING398,OsHIP1, HAF1, OsHAF1,  OsRING275, RING275,OsRFP, RLIM, OsRLIM,  OsRING399, RING399,OsBRCA1,  OsRING285, RING285,OsRFP, OsHIRP1, DLN82, OsDLN82, OsPHD14, PHD14,  OsRING365, RING365,OsRFP ,  OsRING374, RING374,OsRFP ,  OsRING393, RING393,OsRFP,  OsRING317, OsvWA14, vWA14,OsRFP, OsDLN146,  OsRING180, RING180,OsRFP, OsDLN198, OsPHD30, PHD30,  OsRING82, RING82,OsRFP,  OsRING86, OsvWA2, vWA2, OsRGLG1, RGLG1,OsRFP, OsDLN24,  OsRING179, RING179,OsRFP, OsMAR1, MAR1,  OsRING230, RING230,OsRFP,  OsRING229, RING229,OsRFP,OsSIRP1, SIRP1, DLN148, OsDLN148,  OsRING219, RING219,OsRFP,  OsRING321, RING321,OsRFP ,  OsRING177, RING177,OsRFP ,  OsRING31, RING31,OsRFP ,  OsRING282, RING282,OsRFP ,  OsRING384, RING384,OsRFP ,  OsRING128, RING128,OsRFP, OsSIRP2, SIRP2,  OsRING131, RING131,OsRFP, OsPIE1,  OsRING213, RING213,OsRFP ,  OsRING90, RING90,OsRFP, OsSADR1, OsSADRI, SADRI,  OsRING105, RING105,OsRFP ,  OsRING152, RING152,OsRFP ,  OsRING343, RING343,OsRFP ,  OsRING232, RING232,OsRFP ,  OsRING412, RING412,OsSTA11, OsRFP,  OsRING98, RING98,OsRFP ,  OsRING240, RING240,OsRFP, OsDLN108, UCIP3, OsUCIP3,  OsRING214, RING214,OsRFP, OsDLN115,  OsRING354, RING354,OsRFP ,  OsRING276, RING276
42798	27208272	Liu J., Chen X., Liang X., Zhou X., Yang F., Liu J., He S.Y., Guo Z.	Alternative splicing of rice WRKY62 and WRKY76 transcription factor genes in pathogen defense.	Plant Physiol.			2016	PR1A,WRKY76,WRKY62,PAL1,_,CYP71Z7,CPS2,MAS,CPS4,PR10A	OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1, OsPR1b, PR1alpha, OsPR1alpha,OsWRKY76, OsWRKY76.1, OsWRKY76.2, OsWRKY76.3,OsWRKY62, OsWRKY62.1, OsWRKY62.2, XB10, OsWRKY62-1, OsWRKY62-2,OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6,PR1b,Oscyp71Z7, OsCYP71Z6, CYP71Z6,OsCPS2, cps2, OsCPS2ent, CYC2, OsCyc2, OsCYC2, OsCPSL1, cpsl1, OsCyc2/OsCPS2, OsTPS7, Os-CPS2, TPS13, OsTPS13,OsMAS, MAS1, OsMAS1, OsMAS/SDR110C-MS1, SDR110C-MS1, OsSDR110C-MS1, OsMS1, MS1,OsCPS4, CYC1, OsCYC1, OsCyc1, cpsl3, OsCPSL3, OsCPSsyn, OsCyc1/OsCPS4, OsTPS15, Os-CPS4, TPS11, OsTPS11,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 
42799	27097755	Muthamilarasan M., Mangu V.R., Zandkarimi H., Prasad M., Baisakh N.	Structure, organization and evolution of ADP-ribosylation factors in rice and foxtail millet, and their expression in rice.	Sci Rep	6	24008	2016	SAR1C,ARFC1,ARFB1D,_,_,SAR1A,ARFB1C,SAR1D,TTN5,ARFB1A,_,ARFA1C,ARF3,_,ARFB1B,ARFA1E,_,GB1A,_,SAR1B,GB1B	OsARL1d, ARL1d, OsSar1c, Sar1c,OsARFC1, ARFC1,OsARFB1d, ARFB1d,OsARL1a, ARL1a,OsARFA1a, ARFA1a,OsARL1e, ARL1e, OsSar1b, Sar1b, OsSar1a, Sar1a,OsARFB1c, ARFB1c,OsSAR1, SAR1, OsARL1c, ARL1c, OsSar1d, Sar1d,OsTTN5, TTN5,OsARFB1a, ARFB1a,OsARFA1f, ARFA1f,OsARFA1c, ARFA1c,OsARF3, ARF3,OsARFA1d, ARFA1d,OsARFB1b, ARFB1b,OsARFA1e, ARFA1e,OsARL1b, ARL1b,OsGB1a, GB1a,ARF, ARF1, OsARFA1b, ARFA1b,OsARL1f, ARL1f, OsSar1b, Sar1b,OsGB1b, GB1b
42800	27119209	Srivastava A.K., Zhang C., Sadanandom A.	Rice OVERLY TOLERANT TO SALT 1(OTS1) SUMO protease is a positive regulator of seed germination and root development.	Plant Signal Behav		0	2016	OTS1	OsOTS1
42801	27052628	Wang L., Ye, Liu H., Liu X., Wei C., Huang Y., Liu Y., Tu J.	Both overexpression and suppression of an Oryza sativa NB-LRR-like gene OsLSR result in autoactivation of immune response and thiamine accumulation.	Sci Rep	6	24079	2016	CHIB1,PAD4,PR5,_,PR10A,DR8,DXS1,_,PR1A,_,PR4	Oschib1, chib1, PR-8, PR8, OsPR8, OsPR8b, PR8b,OsPAD4,OsPR5, Pir2, PR-5, PR5-1,OsTHIC, THIC,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsDR8, OsXNP, FOXRED1,CLA1, OsDXS1, dxs1, OsDXS, DXS, OsTKL1, TKL1,OsTK, TK,OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1, OsPR1b, PR1alpha, OsPR1alpha,OsLSR, LSR,OsPR4, OsPR4a, PR4a, OsPR-4
42802	27121976	Garroum I., Bidzinski P., Daraspe J., Mucciolo A., Humbel B.M., Morel J.B., Nawrath C.	Cuticular Defects in Oryza sativa ATP-binding cassette Transporter G31 Mutant Plants Cause Dwarfism, Elevated Defense Responses and Pathogen Resistance.	Plant Cell Physiol.			2016	PDR6	OsPDR6, OsABCG31, OsABCG31_1
42803	27095382	Tang W., Wu T., Ye J., Sun J., Jiang Y., Yu J., Tang J., Chen G., Wang C., Wan J.	SNP-based analysis of genetic diversity reveals important alleles associated with seed size in rice.	BMC Plant Biol.	16(1)	93	2016	CYP704A3,MIRF10422-AKR	OsCYP704A3,osa-miRf10422-akr, miRf10422-akr
42804	27079330	Pirzadeh S., Shahpiri A.	Functional characterization of a type 2 metallothionein isoform (OsMTI-2b) from rice.	Int. J. Biol. Macromol.	88	491-6	2016		
42805	27174139	Verma P.K., Verma S., Meher A.K., Pande V., Mallick S., Bansiwal A.K., Tripathi R.D., Dhankher O.P., Chakrabarty D.	Overexpression of rice glutaredoxins (OsGrxs) significantly reduces arsenite accumulation by maintaining glutathione pool and modulating aquaporins in yeast.	Plant Physiol. Biochem.	106	208-217	2016		
42806	27108205	Wang Y., Wang D., Gan T., Liu L., Long W., Wang Y., Niu M., Li X., Zheng M., Jiang L., Wan J.	CRL6, a member of the CHD protein family, is required for crown root development in rice.	Plant Physiol. Biochem.	105	185-194	2016	RFS	rfs, cul7, OsRFS, OsCHR729, CHR729, CHR4, OsCHR4, CRL6, OsCRL, OsCHR4/CHR729, PKR1, OsPHD32, PHD32
42807	27091552	Song A., Xue G., Cui P., Fan F., Liu H., Yin C., Sun W., Liang Y.	The role of silicon in enhancing resistance to bacterial blight of hydroponic- and soil-cultured rice.	Sci Rep	6	24640	2016	PR1A,_,_,CATA,_,CHT8,PAL1	OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1, OsPR1b, PR1alpha, OsPR1alpha,TRP1, OsTRP1,Lox2:Os:1, OsLOX9, LOX9, OsLOX8, LOX8, OsLOX2, LOX2, OsRLL, OsHI-LOX, HI-LOX, RLL2 LOX, RLL2, Lox2osPil, OsLOX2;1, LOX2;1, OsLOX1, OsLOX7, LOX7,CATA1, Cat A1*, OSCAT-A, Cat2, CatA1, CAT-A, OsCatA, OsCAT, CAT, catA, OSCATA, OsCATc, OsCATA, OsCAT1A, CAT1, OsCAT1, OsCATC, OsCAT2,Osj3g1BTF3, BTF3a, Os03g1BTF3,Cht8, OsChia2a, Cht2, Rcht2, Chia2a, CHIT14, OsCHIT14, OsPR3,OsPAL, Pal1*, Pal1, PAL, Pal_1, PalI, PAL2, OsPAL01, PAL01, OSPAL, CP-1, GP-1, OsPAL1, PAL3, OsPAL3
42808	27156135	Nair A., Agarwal R., Chittela R.K.	Biochemical characterization of plant RAD52 protein from rice (Oryza sativa).	Plant Physiol. Biochem.	106	108-117	2016	RAD52-2A	OsRad52-2a
42809	26977084	Gao S., Fang J., Xu F., Wang W., Chu C.	Rice HOX12 Regulates panicle exsertion by Directly Modulating the Expression of ELONGATED UPPERMOST INTERNODE1.	Plant Cell	28(3)	680-95	2016	HOX12,EUI1	Oshox12, OsHox12,eui1, GA16,17ox, CYP714D1, EUI, CYP714D1/EUI, OsEUI, LG5, OsLG5
42810	27006487	Tong H., Chu C.	Reply: Brassinosteroid Regulates Gibberellin Synthesis to Promote Cell Elongation in Rice: Critical Comments on Ross and Quittenden's Letter.	Plant Cell	28(4)	833-5	2016	BRD1,BIN2,BZR1,D18,D11,DLT,SLR1	brd1, OsDWARF, DWARF, OsBR6ox, BR6ox, CYP85A1, CYP85A4, OsDWF, CYP85A1/OsDWARF, OsBRD1, OsCYP85A1,GSK2, Os GSK2, OsGSK2, Os BIN2, OsBIN2, BIN2/GSK2, OsSK22/OsGSK7, OsSK22, OsGSK7, SK22, GSK7, OsSK22/GSK2 ,OsBZR1, Os BZR1, OsBES1-6, BES1-6,d18-h  (d18-I, d18h), dwf15, d25, d18, d18-k, d18-AD, d18-dy, OsGA3ox2, ga3ox2, OsGA3OX2, GA3OX2, OsGA3ox-2, GA3ox-2, GA3ox1,d11(d8), dwf10, d8, D11/CYP724B1, d11, CYP724B1, GNS4, OsD11, PMM1, OsPMM1, PMM1/D11, NBG4, OsCPB1, CPB1, CPB1/D11,dlt, OsGRAS32, OsDLT, OsDLT1, DTL1, OsGRAS-32, OsGRAS32, GRAS-32, GRAS32, SMOS2/DLT, SMOS2, OsSMOS2, OsGS6, GS6,slr1-1, slr1, slr, GAI, OsGAI, OsSLR1, Os SLR1, OsRGA1, OsGRAS-18, OsGRAS-18, GRAS-18, GRAS18, SLR-1
42811	26941088	Yang C., Hu H., Ren H., Kong Y., Lin H., Guo J., Wang L., He Y., Ding X., Grabsztunowicz M., Mulo P., Chen T., Liu Y., Wu Z., Wu Y., Mao C., Wu P., Mo X.	LIGHT-INDUCED RICE1 Regulates Light-Dependent Attachment of LEAF-TYPE FERREDOXIN-NADP+ OXIDOREDUCTASE to the Thylakoid Membrane in Rice and Arabidopsis.	Plant Cell	28(3)	712-28	2016	LFNR1,STR12,_,LIR1,_	OsLFNR1, LFNR2, Os-LFNR2, OsLFNR2, FNR, PetH-2,OsStr12, Str12, TROL, Os-TROL, OsTROL,TIC62, Os-TIC26, OsTIC26,Lir1, OsLIR1, Os-LIR1,OsLFNR2, LFNR2, FNR, LFNR1, Os-LFNR1, OsLFNR1, PetH-1
42812	26950093	Si L., Chen J., Huang X., Gong H., Luo J., Hou Q., Zhou T., Lu T., Zhu J., Shangguan Y., Chen E., Gong C., Zhao Q., Jing Y., Zhao Y., Li Y., Cui L., Fan D., Lu Y., Weng Q., Wang Y., Zhan Q., Liu K., Wei X., An K., An G., Han B.	OsSPL13 controls grain size in cultivated rice.	Nat. Genet.	48(4)	447-56	2016	TID1,LK3,GLW7 	OsTID1, TubA2, SRS5, OS-TubA2, OsTubA2, OsSRS5, ,lk3(t), lk3(t)*, SG3, GS3, SG3-GS3, OsGW3, OsGS3, RGG3/GS3/Mi/OsGGC1, RGG3, Mi, OsGGC1, GGC1, OsSYL3, SYL3, TT2, OsTT2,OsSPL13, SPL13, OsGLW7
42813	26883752	Qin H., Deng Z., Zhang C., Wang Y., Wang J., Liu H., Zhang Z., Huang R., Zhang Z.	Erratum to: Rice GDP-mannose pyrophosphorylase OsVTC1-1 and OsVTC1-3 play different roles in ascorbic acid synthesis.	Plant Mol. Biol.	90(4-5)	533	2016		
42814	26940322	Kadotani N., Akagi A., Takatsuji H., Miwa T., Igarashi D.	Exogenous proteinogenic amino acids induce systemic resistance in rice.	BMC Plant Biol.	16(1)	60	2016	WRKY45,NH1,AOC	OsWRKY45, OsWRKY45-1, OsWRKY45-2, WRKY45-1, WRKY45-2,OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2, DLN5, OsDLN5,  OsBTBA1, BTBA1,OsAOC, AOC1, OsAOC1, HB, CPM2, OsAOC4, AOC4
42815	26936408	Sun P., Zhang W., Wang Y., He Q., Shu F., Liu H., Wang J., Wang J., Yuan L., Deng H.	OsGRF4 controls grain shape, panicle length and seed shattering in rice.	J Integr Plant Biol			2016	CKX5,GS5,GS2,CKX1,GN1A	OsCKX5, ckx5,OsSCP26, SCP26, OsGS5,OsGRF4, GRF4, GS2/OsGRF4, PT2, GLW2, GS2/GL2, LGS1, OsLGS1,OsCKX1,Gn1a, OsCKX2, CKX2, ckx2, Gn1a/OsCKX2, Os CKX2, CKX2/Gn1a
42816	26960731	Wang H., Hu Q., Tang D., Liu X., Du G., Shen Y., Li Y., Cheng Z.	OsDMC1 Is Not Required for Homologous Pairing in Rice Meiosis.	Plant Physiol.	171(1)	230-41	2016	HEI10,DMC1B,DMC1A	HEI10A, HEI10B, OsHEI10,  OsRING434, RING434,OsDMC1B, OsDmc1B, Dmc1B, RiLIM15B ,OsDMC1A, OsDmc1A, Dmc1A, DMC1, OsDMC1, RiLIM15A, OsRad51
42817	26987457	Petla B.P., Kamble N.U., Kumar M., Verma P., Ghosh S., Singh A., Rao V., Salvi P., Kaur H., Saxena S.C., Majee M.	Rice PROTEIN l-ISOASPARTYL METHYLTRANSFERASE isoforms differentially accumulate during seed maturation to restrict deleterious isoAsp and reactive oxygen species accumulation and are implicated in seed vigor and longevity.	New Phytol.			2016	PIMT2,PIMT1	OsPIMT2, OsPIMT2'-1, OsPIMT2'-2, deltaOsPIMT2,OsPIMT1, OsPIMT1'
42818	26986930	Nounjan N., Siangliw J.L., Toojinda T., Chadchawan S., Theerakulpisut P.	Salt-responsive mechanisms in chromosome segment substitution lines of rice (Oryza sativa L. cv. KDML105).	Plant Physiol. Biochem.	103	96-105	2016		
42819	27000976	Malik N., Dwivedi N., Singh A.K., Parida S.K., Agarwal P., Thakur J.K., Tyagi A.K.	An Integrated Genomic Strategy Delineates Candidate Mediator Genes Regulating grain size and Weight in Rice.	Sci Rep	6	23253	2016	PFT1,_,_,_,_,_,_,RLCK305,MED14_1 ,BIP1,_,SFR6,_,BIP5,_,_,MED14_2,_,_,_,_,_,_,_,_,_,CTHSP70-1,_,CDKE;1,_,_,MED37_1,_,BIP4,_,_,_,_,_,SPL40,_,_,_,HSP71.1,_,_,_,_,_,_,_,_,_,_,MED7	OsPFT1, OsMED25_1, MED25_1, OsMED25, MED25, OsvWA27, vWA27,OsMED31a, MED31a, OsMed31_1, Med31_1 ,OsCycC_1, CycC_1,OsMED12_2, MED12_2,OsMED10, MED10, OsMed10_1, Med10_1 ,OsMed36_1, Med36_1 ,OsMed17_1, Med17_1,OsPUB53, PUB53, OsRLCK305, OsMed2_1, Med2_1 ,  OsPUB53, PUB53,OsMED14_1,OsBiP1, BiP1, BiP, Bip3, OsBiP3, BIP1/OsBIP3, OsMed37_2, Med37_2 ,OsMED15_1, MED15_1, OsKIX_3, KIX_3,OsMed16_1, Med16_1, OsSFR6, OsMED16, MED16,OsMED4_2, MED4_2 ,OsBiP5, OsBiP, BiP, BiP5, OsMed37_7, Med37_7,OsMED11_1, MED11_1 ,OsMed11_2, Med11_2,OsMed14_2, Med14_2,OsMed9_2, Med9_2,OsMed26_1, Med26_1,OsMed36_2, Med36_2 ,OsMed22_2, Med22_2,OsMed28_1, Med28_1,OsMED9, MED9, OsMED9_1, MED9_1 ,OsTFIIS-like gene, OsMed26_3, Med26_3,OsMED5_3, MED5_3,OsMed35_1, Med35_1 ,OsctHSP70-1, ctHSP70-1, OsMed37_6, Med37_6, OsHSP70.6, HSP70.6,OsMed26_2, Med26_2,CDKE;1, Orysa;CDKE;1, OsCdk8_1, Cdk8_1 ,OsMed18_1, Med18_1,OsMed23_1, Med23_1,OsMed37_1, Med37_1, OsHSP70, OsHSP70.1, HSP70.1,OsWD40-173, WD40-173, OsMed4_1, Med4_1 ,  OsDWD4, DWD4,OsBiP4, BiP4, OsMed37_5, Med37_5, BiP2,OsRecQl4, RecQl4, OsMed34_1, Med34_1 ,OsMed3_1, Med3_1,HSP70, hsp70, OsHSP70 , OsMed37_8, Med37_8 ,OsMED15_2, OsKIX_10, MED15_2, KIX_10,OsMed26_4, Med26_4,OsMed5_1, Med5_1,OsMed22_1, Med22_1,OsMED31b, MED31b, OsMed31_2, Med31_2 ,OsMed8_1, Med8_1,OsHsp71.1, OsHSP71.1, OsMED37_3, MED37_3 ,OsMED21, MED21, OsMed21_1, Med21_1,OsMed34_2, Med34_2,OsMed30_1, Med30_1,OsMED6, MED6, OsMed6_1, Med6_1 ,OsMED19b, MED19b, OsMed19_1 , Med19_1 ,OsMED20_1, MED20_1 ,OsMed5_2, Med5_2,OsMed12_1, Med12_1,OsHSP70, hsp70, OsMed37_4, Med37_4 ,OsMed13_1, Med13_1,OsMED7, OsMed7_1, Med7_1 
42820	26983995	Chen Z.C., Yamaji N., Fujii-Kashino M., Ma J.F.	A Cation-Chloride Cotransporter Gene Is Required for Cell Elongation and Osmoregulation in Rice.	Plant Physiol.	171(1)	494-507	2016	CCC1	Os CCC1, OsCCC1, OsLAT9 
42821	27095404	Jing P., Zou J., Kong L., Hu S., Wang B., Yang J., Xie G.	OsCCD1, a novel small calcium-binding protein with one EF-hand motif, positively regulates osmotic and salt tolerance in rice.	Plant Sci.	247	104-14	2016	P5CS,APX1,CCD1	OsP5CS, P5CS1, OsP5CS1, OsALDH18B1, ALDH18B1, OsP5CS-1, P5CS-1,OsAPX1, APXa, OsAPXa, OsAPx01, OsAPx1, OSAPX1, APx1, cAPX, APX2, cAPXa, OscAPXa,OsCCD1
42822	27007717	Zheng X., Yang S., Zhang D., Zhong Z., Tang X., Deng K., Zhou J., Qi Y., Zhang Y.	Effective screen of CRISPR/Cas9-induced mutants in rice by single-strand conformation polymorphism.	Plant Cell Rep.			2016	OUL1,DEP1	ROC5, Roc5(t), Roc5, GL2-5, OsROC5, CLF1, OsCLF1, OsOUL1, OsHDZ7, OsHDZIP7, HDZ7, HDZIP7,OsDEP1, EP, qPE9-1, DN1, DEP1/DN1/qPE9-1, qNGR9, qDEP1, RGG4/DEP1/DN1/qPE9-1/OsGGC3, RGG4, OsDN1, OsGGC3, GGC3
42823	26945857	Bruno M., Al-Babili S.	On the substrate specificity of the rice strigolactone biosynthesis enzyme DWARF27.	Planta	243(6)	1429-40	2016	D27	d27(d t), dt, dwf23, d27, OsD27
42824	26956369	Ni J., Yu Z., Du G., Zhang Y., Taylor J.L., Shen C., Xu J., Liu X., Wang Y., Wu Y.	Heterologous Expression and Functional Analysis of Rice GLUTAMATE RECEPTOR-LIKE Family Indicates its Role in Glutamate Triggered Calcium Flux in Rice Roots.	Rice (N Y)	9(1)	9	2016	GLR3.5,GLR2.2,GLR2.1,GLR2.3,GLR2.4,GLR1.1,_,GLR4.9,GLR3.3,GLR3.1,GLR3.6,GLR1.3,GLR1.2	OsGLR3.5, OsGLR3.3, GLR3.3, OsGLR6.12, GLR6.12,OsGLR2.2, OsGLR2.1, GLR2.1, OsGLR9.4, GLR9.4,OsGLR2.1, OsGLR2.2, GLR2.2, OsGLR9.3, GLR9.3,OsGLR2.3, OsGLR9.5, GLR9.5,OsGLR2.4, OsGLR9.6, GLR9.6,OsGLR1.1, OsGLR1.2, GLR1.2, OsGLR9.8, GLR9.8,OsGLR3.1, GLR3.1, OsGLR3.2, GLR3.2, OsGLR2.1, GLR2.1,OsGLR4.9, OsGLR1.3, GLR1.3, OsGLR6.10, GLR6.10,OsGLR3.3, OsGLR3.5, GLR3.5, OsGLR6.1, GLR6.1,OsGLR3.2, GLR3.2, OsGLR3.1, OsGLR4.1, GLR4.1,OsGLR3.6, OsGLR3.4, GLR3.4, OsGLR7.1, GLR7.1,OsGLR1.3, OsGLR1.1, GLR1.1, OsGLR9.7, GLR9.7,OsGLR1.2, OsGLR1.4, GLR1.4, OsGLR2.2, GLR2.2
42825	26994476	Yang X., Gong P., Li K., Huang F., Cheng F., Pan G.	A single cytosine deletion in the OsPLS1 gene encoding vacuolar-type H+-ATPase subunit A1 leads to premature leaf senescence and seed dormancy in rice.	J. Exp. Bot.	67(9)	2761-76	2016	PAL,_,WRKY72,WRKY42,_,WRKY71,WRKY107,WRKY53,WRKY77,KAT1,VHA-A2,PAL1,RCCR1,SGR,PAL1,PLS1,WRKY79,WRKY6	OsPAL, OsPAL08, PAL2, GP-28, GP28, PAL08, OsPAL2, OsPAL8, PAL8,OsPAL02, PAL02, OsPAL5, PAL5, OsPAL2. PAL2, OsPAL1,OsWRKY72, WRKY-72,OsWRKY42, WRKY-42,OsPAL07, OsPAL, PAL07, OsPAL6, PAL6, PAL1, OsPAL7, PAL7,OsWRKY71, WRKY-71,OsWRKY107,OsWRKY53, WRKY-53,OsWRKY77, WRKY-77,OsI57, I57, OsKAT1, OsACAA1, ACAA1,OsVHA-A2, VHAA2,OsPAL, Pal1*, Pal1, PAL, Pal_1, PalI, PAL2, OsPAL01, PAL01, OSPAL, CP-1, GP-1, OsPAL1, PAL3, OsPAL3,OsRCCR1, OsRCCR, RCCR,sgr(t), sgr, OsSGR, OsSgr, SGR1, OsSGR1,OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6,OsVHA-A, VHAA1, VHA-A1, OsVHA-A1, OsPLS1, OsPSL1/VHA-A1,OsWRKY79, WRKY-79,OsWRKY6, WRKY-6, DLN103, OsDLN103
42826	26831097	Zhao Y., Chan Z., Gao J., Xing L., Cao M., Yu C., Hu Y., You J., Shi H., Zhu Y., Gong Y., Mu Z., Wang H., Deng X., Wang P., Bressan R.A., Zhu J.K.	ABA receptor PYL9 promotes drought resistance and leaf senescence.	Proc. Natl. Acad. Sci. U.S.A.	113(7)	1949-54	2016		
42827	26923852	Hao B., Caulfield J.C., Hamilton M.L., Pickett J.A., Midega C.A., Khan Z.R., Wang J., Hooper A.M.	Biosynthesis of natural and novel C-glycosylflavones utilising recombinant Oryza sativa C-glycosyltransferase (OsCGT) and Desmodium incanum root proteins.	Phytochemistry	125	73-87	2016	_	OsCGT, CGT
42828	26912459	Cheung M.Y., Li X., Miao R., Fong Y.H., Li K.P., Yung Y.L., Yu M.H., Wong K.B., Chen Z., Lam H.M.	ATP binding by the P-loop NTPase OsYchF1 (an unconventional G protein) contributes to biotic but not abiotic stress responses.	Proc. Natl. Acad. Sci. U.S.A.	113(10)	2648-53	2016	YCHF1	OsYchF1, YchF1, OsPM8ATP 
42829	26872973	Tsukagoshi Y., Suzuki H., Seki H., Muranaka T., Ohyama K., Fujimoto Y.	Ajuga Delta24-Sterol Reductase Catalyzes the Direct Reductive Conversion of 24-Methylenecholesterol to Campesterol.	J. Biol. Chem.	291(15)	8189-98	2016	BRD2	brd2, OsBRD2, Dim/dwf1, Dim, dwf1, OsDWF1, DWF1, LTBSG1, OsLTBSG1, LHDD10, OsLHDD10, OsD-LDH3, D-LDH3
42830	26864016	Cho L.H., Yoon J., Pasriga R., An G.	Homodimerization of Ehd1 Is Required to Induce Flowering in Rice.	Plant Physiol.	170(4)	2159-71	2016	EF1,RR1,HD3A,RFT1	Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,rr1, OsRR1, Rra9, OsRRA9,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,FT-L 3, OsFTL3, FTL3, FT-L3, RFT, OsRFT1
42831	26834011	Lu H.P., Pang W.Q., Li W.X., Tan Y.Y., Wang Q., Zhao H.J., Shu Q.Y.	Tissue-specific expression, developmentally and spatially regulated alternative splicing, and protein subcellular localization of OsLpa rice.	J Zhejiang Univ Sci B	17(2)	100-9	2016	LPA1	Lpa1, OsLpa1, OsLpa1.1, OsLpa1.2, OsLpa1.3, Oslpa1, OsLpa1-3.1, OsLpa1-3.2, OsLpa1-3.3
42832	26872834	Tan J., Jin M., Wang J., Wu F., Sheng P., Cheng Z., Wang J., Zheng X., Chen L., Wang M., Zhu S., Guo X., Zhang X., Liu X., Wang C., Wang H., Wu C., Wan J.	OsCOL10, a CONSTANS-like Gene, Functions as a flowering time Repressor Downstream of Ghd7 in Rice.	Plant Cell Physiol.	57(4)	798-812	2016	HD3A,BBX10,EF1,GHD7,RFT1	Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,OsBBX10, OsJ, OsCCT14, OsCOL10, COL10, OsCOL9, CCT14, COL9,Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,Ghd2, Ghd7, OsGhd7, OsCCT26, OsCMF8, OsI, Ghd7/Hd4, Hd4, EH7-1/Hd4, Ghd7-0a, EH7-1, EH7/Ghd7, EH7, OsEH7, GLW7.1, OsGLW7.1,FT-L 3, OsFTL3, FTL3, FT-L3, RFT, OsRFT1
42833	26841113	Sato H., Todaka D., Kudo M., Mizoi J., Kidokoro S., Zhao Y., Shinozaki K., Yamaguchi-Shinozaki K.	The Arabidopsis transcriptional regulator DPB3-1 enhances heat stress tolerance without growth retardation in rice.	Plant Biotechnol. J.			2016	HSP17.3,HSFA3,DPB3-2,HSFA2A,ERF42,HSP17.9A	OsHsp17.3, OsHSP17.3, Oshsp17.3 ,HSfA3, OsHsfA3, OsHsf-07, HSF07, OsHSF7, HSF7, DLN57, OsDLN57,OsDPB3-2,HSfA2a, OsHsfA2a, OsHsf-11, rHsf4, OsHSF11, HSF11, HSF4, RHSP2, OsHsfA2a-1, OsHsfA2a-2, OsHsfA2a-3, OsHsfA2a-4, OsHsfA2a-5, OsHsfA2a-6, OsHsfA2e, HsfA2e ,OsERF#042, OsERF042, OsERF42, AP2/EREBP#048, AP2/EREBP48, OsDREB2B, DREB2B, OsDREB2B2, OsDREB2A, DREB2A,Oshsp17.9A, OsHsp17.9A, OsHSP17.9A-CI, Oshsp17.9
42834	26879413	Sugano S., Hayashi N., Kawagoe Y., Mochizuki S., Inoue H., Mori M., Nishizawa Y., Jiang C.J., Matsui M., Takatsuji H.	Rice OsVAMP714, a membrane-trafficking protein localized to the chloroplast and vacuolar membrane, is involved in resistance to rice blast disease.	Plant Mol. Biol.	91(1-2)	81-95	2016	VAMP71112,VAMP714,VAMP7111	OsVAMP7112,OsVAMP714,OsVAMP7111
42835	26938582	Aznar-Moreno JA., Venegas-Caler?n M., Du Z.Y., Garc?s R., Tanner J.A., Chye M.L., Mart?nez-Force E., Salas J.J.	Characterization of a small acyl-CoA-binding protein (ACBP) from Helianthus annuus L. and its binding affinities.	Plant Physiol. Biochem.	102	141-50	2016		
42836	26869604	Fred A.K., Kiswara G., Yi G., Kim K.M.	Screening rice cultivars for resistance to bacterial leaf blight.	J. Microbiol. Biotechnol.			2016	PR10B	RPR10b, PR-10b, PR10b, PBZ1, PBZ-1, OsPBZc, OsPR10b, BetV, OsBetV
42837	26732823	Cordeiro A.M., Figueiredo D.D., Tepperman J., Borba A.R., Louren?o T., Abreu I.A., Ouwerkerk P.B., Quail P.H., Margarida Oliveira M., Saibo N.J.	Rice Phytochrome-interacting factor protein OsPIF14 represses OsDREB1B gene expression through an extended N-box and interacts preferentially with the active form of Phytochrome B.	Biochim. Biophys. Acta	1859(2)	393-404	2016	PHYB,DREB1B,PIL14	phyB, PHYB1, OsPHYB, OsphyB, OsYHB, YHB, OsPHYB/OsYHB,OsDREB1B, ERF31, OsERF031, OsERF#031, OsERF31, AP2/EREBP#169, AP2/EREBP169, OsDREB1b, OsDREB1C, OsCBF1, CBF1,OsPIL14, OsbHLH104, bHLH104, OsPIF14, PIF14, OsPIF14alpha, OsPIF14beta
42838	26771167	Yoshitomi K., Taniguchi S., Tanaka K., Uji Y., Akimitsu K., Gomi K.	Rice terpene synthase 24 (OsTPS24) encodes a jasmonate-responsive monoterpene synthase that produces an antibacterial gamma-terpinene against rice pathogen.	J. Plant Physiol.	191	120-6	2016	TPS24	OsTPS24
42839	27095397	Bai B., Zhao J., Li Y., Zhang F., Zhou J., Chen F., Xie X.	OsBBX14 delays heading date by repressing florigen gene expression under long and short-day conditions in rice.	Plant Sci.	247	25-34	2016	RFT1,TOC1,SE1,CCA1,_,EF1,HD3A	FT-L 3, OsFTL3, FTL3, FT-L3, RFT, OsRFT1,OsTOC1, OsPRR1, Os-PRR1, PRR1, OsRRA21, OsCCT07,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, OsHd1,  Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,OsCCA1, OsLHY, LHY, LHY-like_chr.8, COC1, DLN203, OsDLN203, LEM1, OsLEM1, Nhd1, OsNhd1,OsBBX14, BBX14, OsDBB3b, DBB3b,Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a 
42840	26833031	Pittman J.K., Hirschi K.D.	Phylogenetic analysis and protein structure modelling identifies distinct Ca(2+)/Cation antiporters and conservation of gene family structure within Arabidopsis and rice species.	Rice (N Y)	9(1)	3	2016	CDT1,CAX8,_,CAX1B,CAX1A,CCX1,_,_,CCX4,CAX3,CAX2,CAX1C,_,CAX4,CCX3	OsCDT1, OsCCX2, CCX2, OsNCX8, NCX8,OsCAX8, OsNCX13, NCX13, OsNaCa11exB, OsCCX5, CCX5, CCX5_Ath,OsMHX1, MHX1, OsMHX2, MHX2,OsCAX1b, CAX1b, CAX3, OsNCX10, NCX10,OsCAX1a, CAX1a, CAX1, OsCAX1, OsNCX2, OsNCX2.1, OsNCX2.2, NCX2, OsVCAX1a,OsCCX1, OsNCX6, NCX6,OsEFCAX2, OsNCX4, OsNCX4.1, OsNCX4.2, NCX4, OsNCL2, NCL2,OsMHX, OsMHX2, MHX2, OsNCX14, OsNCX14.1, OsNCX14.2, NCX14, OsMHX1, MHX1,OsCCX4, OsNCX15, NCX15,OsCAX3, CAX6, OsNCX9, OsNCX9.1, OsNCX9.2, NCX9,OsCAX2, CAX5, OsNCX7, OsNCX7.1, OsNCX7.2, NCX7, OsVCX2, OsOSCA1.2, OSCA1.2,OsCAX1c, CAX1c, CAX4, OsNCX5, OsNCX5.1, OsNCX5.2, NCX5,OsEFCAX1, OsNCX1, OsNCX1.1, OsNCX1.2, NCX1, OsNCL1, NCL1,CAX2, OsCAX2, OsCAX4, OsSTA47, OsNCX3, NCX3,OsCCX3, OsNCX11, NCX11
42841	26869703	Srivastava A.K., Zhang C., Yates G., Bailey M., Brown A., Sadanandom A.	SUMO Is a Critical Regulator of Salt Stress Responses in Rice.	Plant Physiol.	170(4)	2378-91	2016	SPF1,FUG1,_,RSS3,OTS3,_,_,_,ELS2,_,SODCC1,_,DRO1,IAA23,OTS2,ELS1,OTS1,RSS1,_,_	OsSPF1, OsSPF1.1, OsSPF1.2,OsFUG1,,,OsOTS3,,,prx60, POX-1,OsELS2,SOD, OsSOD-Cu/Zn, SOD-Cu/Zn, OsaCCS, OsCCS, CCS,sodCc1, SODCC.1, sodA, RSODA, OsSOD1, OsCSD2, OsSodA, SodCc2, OsSODA1, SODCc1-Cu/Zn, OsCu/Zn-SOD2, Cu/Zn-SOD2, OsCSD1.2, CSD1.2, OsSODCc1-Cu/Zn, SODCc1-Cu/Zn, CuZnSOD1, Cu/ZnSOD1, OsCu/ZnSOD1, OsCSD4, CDS4, CuZnSOD4, OsCuZnSOD1, OsCSD1, CSD1, OsSOD2,prx109, POX-2,Dro1, OsDRO1, OsSPR1, SPR1, DRO1/OsNGR3, OsNGR3, NGR3,OsIAA23,OsOTS2,OsELS1,OsOTS1,,,
42842	26918637	Yang J., Gao M.X., Hu H., Ding X.M., Lin H.W., Wang L., Xu J.M., Mao C.Z., Zhao F.J., Wu Z.C.	Osclt1, a CRT-like transporter 1, is required for glutathione homeostasis and arsenic tolerance in rice.	New Phytol.			2016	_,PHF1,_	OsCLT2, CLT2,OsPHF1, OsWD40-137, OsSEC12,OsCLT1, CLT1
42843	26920613	Guan Q.J., Ma H.Y., Wang Z.J., Wang Z.Y., Bu Q.Y., Liu S.K.	A rice LSD1-like-type ZFP gene OsLOL5 enhances saline-alkaline tolerance in transgenic Arabidopsis thaliana, yeast and rice.	BMC Genomics	17(1)	142	2016	SOD4,GR2,APX2,_,LOL2	OsSOD4, OsCSD4, OsCu/Zn-SOD1, Cu/Zn-SOD1, OsCSD2, CSD2, OsSOD4-Cu/Zn, SOD4-Cu/Zn, Cu/ZnSOD3, CuZnSOD3, sodCp, OssodCp, OsCu/ZnSOD3, CuZnSOD2, OsSOD1,OsGR2, RGRC2, OsGR, OsGR3, OsRGRC2,OsAPX2, OsAPx02, APXb, OsAPx2, OSAPX2, APx2, cAPX, OsAPX1, APX1,OsCatC, CatC, OsCAT, OsCAT1, CAT1,OsLOL2, OsLSD5, OsLOL5, LOL5
42844	26839129	Wang Y., Wang C., Zheng M., Lyu J., Xu Y., Li X., Niu M., Long W., Wang D., Wang H., Terzaghi W., Wang Y., Wan J.	WHITE PANICLE1, a Val-tRNA synthetase Regulating Chloroplast Ribosome Biogenesis in Rice, Is Essential for Early Chloroplast Development.	Plant Physiol.	170(4)	2110-23	2016	PSAA,RPOA,VALRS1,WP1,RBCL,PSAB,VALRS3	PsaA, psaA, PsAA1, psaA1,rope, rpoalpha, Rpoalpha, rope, RpoA ,OsValRS1, ValRS1,OsValRS2, ValRS2,rbcL, rbcA, OsrbcL,PsaB, psaB, PsAA2, psaA2,OsValRS3, ValRS3
42845	26874295	Nguyen H.P., Jeong H.Y., Kim H., Kim Y.C., Lee C.	Molecular and biochemical characterization of rice pectin methylesterase inhibitors (OsPMEIs).	Plant Physiol. Biochem.	101	105-12	2016	PMEI6,PMEI38,PMEI15,PMEI3,PMEI44,PMEI27,PMEI37,PMEI28,PMEI18,PMEI13,PMEI35,INVINH1,PMEI49,PMEI43,PMEI7,PMEI48,PMEI29,PMEI8,PMEI36,PMEI23,PMEI16,INVINH3,PMEI40,PMEI10,INVINH2,PMEI22,PMEI9,PMEI32,OSIPP3,PMEI17,PMEI4,PMEI25,PMEI42,PMEI31,PMEI2,PMEI1,PMEI33,PMEI21,PMEI26,PMEI30,PMEI12,PMEI5,PMEI46,PMEI45,PMEI39,PMEI34,PMEI47,PMEI41	OsPMEI6,OsPMEI38,OsPMEI15,OsPMEI3,OsPMEI44,AGP, OsAGP, OsPMEI27,OsPMEI37,OsPMEI28,OsPMEI18,OsPMEI13,OsPMEI35,OsINVINH1, OS-INVINH1, OsPMEI11, PMEI11,OsPMEI49,OsPMEI48, PMEI48, OsPMEI43,OsPEI, PEI, OsPMEI7,OsPMEI48,OsPMEI29,OsPMEI8,OsPMEI36,OsPMEI23,OsPMEI16,OsINVINH3, OS-INVINH3, OsPMEI19, PMEI19,OsPMEI40,INVINH/PMEI, OsPMEI10,OsINVINH2, OS-INVINH2, OsPMEI20, PMEI20,OsPMEI22,OsPMEI9,OsPMEI32,OsPMEI24, PMEI24,OsPMEI17,OsPMEI4,OsPMEI25,OsPMEI42,INVINH/PMEI, OsPMEI31,OsPMEI2,PMEI-1, OsPMEI1,OsPMEI33,OsSTA139, OsPMEI21,OsPMEI26,OsPMEI30,OsPMEI12,OsPMEI5,PMEI, OsPMEI46,OsPMEI45,OsPMEI39,OsPMEI34,OsPMEI47,OsPMEI41
42846	26902738	Mosa K.A., Kumar K., Chhikara S., Musante C., White J.C., Dhankher O.P.	Enhanced Boron Tolerance in Plants Mediated by Bidirectional Transport Through Plasma Membrane Intrinsic Proteins.	Sci Rep	6	21640	2016	PIP2;6,PIP1;3	OsPIP2;6, PIP2-6, OsPIP2-6, PIP2-5, OsPIP2-5,OsPIP1;3. PIP1.3, PIP1-3, RWC3, RWC-3, OsPIP1-3
42847	27200061	Chai C., Subudhi P.K.	Comprehensive Analysis and Expression Profiling of the OsLAX and OsABCB Auxin Transporter Gene Families in Rice (Oryza sativa) under Phytohormone Stimuli and Abiotic Stresses.	Front Plant Sci	7	593	2016	RAU1,ABCB12,MDR15,_,ABCB19,ABCB9,MDR14,RAU3,MDR5,MDR7,ABCB10,ABCB13,MDR9,MDR11,MDR3,RAU4,MDR6,MDR4,MDR16,MDR1,MDR13,RAU2,MDR17,MDR10,MDR12,MDR8,ABCB18	OsLAX1, OsRAU1, OsAUX1, LAX1, AUX1,OsABCB12, OsPGP12, PGP12,OsABCB20, ABCB20, OsPGP20, OsMDR15,OsLAX5, OsAUX5, LAX5, AUX5,OsABCB19, OsPGP19,OsABCB9, OsPGP9, OsISC33,OsABCB22, ABCB22, OsPGP22, OsMDR14,OsLAX3, OsRAU3, OsAUX2, LAX3, AUX2, OsAUX3, AUX3, ARF2,OsABCB3, ABCB3, OsPGP3, OsMDR5, OsISC34,MDR4, OsABCB5, ABCB5, OsPGP5, OsMDR7, OsISC28, MRP4, OsMRP4, OsABCB11, ABCB11, MR7, OsMR7,OsABCB10, OsPGP10,OsABCB13, OsPGP13,OsABCB4, ABCB4, OsPGP4, OsMDR9, OsISC30,OsABCB11, ABCB11, OsPGP11, OsMDR11, OsABCB11_1, OsABCB11_2,OsABCB17, ABCB17, OsPGP17, OsMDR3, OsABCB17_1,OsLAX4, OsRAU4, OsAUX4, LAX4, AUX4,OsABCB2, ABCB2, OsPGP2, OsMDR6, OsABCB2_1, OsABCB2_2,OsABCB1, ABCB1, OsPGP1, OsMDR4,OsABCB21, ABCB21, OsPGP21, OsMDR16,OsABCB15, ABCB15, OsPGP15, OsMDR1, OsMDR2, MDR2, OsSTA125,OsABCB14, ABCB14, OsPGP14, OsMDR13, OsABCB14_1, OsABCB14_2,OsLAX2, OsRAU2, OsAUX3, LAX2, AUX3 ,OsABCB7, ABCB7, OsPGP7, OsMDR17,OsABCB8, ABCB8, OsPGP8, OsMDR10, OsISC29,OsABCB16, ABCB16, OsPGP16, OsMDR12,OsABCB6, ABCB6, OsPGP6, OsMDR8, OsISC31,OsABCB18, OsPGP18, OsABCB18_1, OsABCB18_2
42848	26754793	Hwang Y.H., Kim S.K., Lee K.C., Chung Y.S., Lee J.H., Kim J.K.	Functional conservation of rice OsNF-YB/YC and Arabidopsis AtNF-YB/YC proteins in the regulation of flowering time.	Plant Cell Rep.	35(4)	857-65	2016	HAP5E,HAP5B,HAP3I,HAP5A,HAP3F,HD5,HAP5C,HAP5D	OsHAP5E, NF-YC, CBF-C, OsNF-YC7, Os-NF-YC7, NF-YC7, NFYC7,OsHAP5B, NF-YC, CBF-C, OsNF-YC4, Os-NF-YC4, NF-YC4, NFYC4, OsNF-YC4-3, NF-YC4-3,OsHAP3I, NF-YB, CBF-A, NF-YB8, OsNF-YB8, NFYB8,OsHAP5A, NF-YC, CBF-C, OsNF-YC1, Os-NF-YC1, NF-YC1, NFYC1 , OsNF-YC4-2, NF-YC4-2,OsHAP3F, NF-YB, CBF-A, NF-YB10, OsNF-YB10, NFYB10,Hd5(t)*, Hd5, qHD5, HAP3H, OsHAP3H, NF-YB, CBF-A, DTH8 , qHD5(t)*, Ghd8, Ghd8/DTH8, Lhd1, NF-YB11, OsNF-YB11, NFYB11, LH8, DTH8/Ghd8, RH8, DTH8/Ghd8/LHD1, CAR8, DTH8/Ghd8/ OsHAP3H, EF8, OsEF8,OsHAP5C, NF-YC, CBF-C, OsNF-YC2, Os-NF-YC2, NF-YC2, NFYC2, OsNF-YC4-1, NF-YC4-1,OsHAP5D, NF-YC, CBF-C, OsNF-YC6, Os-NF-YC6, NF-YC6, NFYC6
42849	26810875	Wu Y.S., Yang C.Y.	Physiological Responses and Expression Profile of NADPH Oxidase in Rice (Oryza Sativa) Seedlings under Different Levels of Submergence.	Rice (N Y)	9(1)	2	2016	RBOHE,RBOHF,SGR,RBOHA,RCCR1,RBOHC,ICL,RBOHI,RBOHH,RBOHB,RBOHD,RBOHG	rbohE, OsrbohE, Os rbohE, OsRbohE, OsNox3, Nox3, OsRboh3, Rboh3,RbohF, rbohF, OsrbohF, Os rbohF, OsNox6, Nox6, OsrbohE, rbohE, OsRboh6, Rboh6,sgr(t), sgr, OsSGR, OsSgr, SGR1, OsSGR1,rbohA, OsrbohA, Os rbohA, OsRbohA, OsNox2, Nox2, OsRboh2, Rboh2,OsRCCR1, OsRCCR, RCCR,rbohC, OsrbohC, Os rbohC, OsRbohC, OsNox5, Nox5, OsrbohD, OsRboh5, RBOHA, OsRboh5, Rboh5,OsEnS-107, EnS-107, OsI85, I85, OsICL, Osl85, l43, Osl43, OsL85,OsrbohI, Os rbohI, rbohI, OsRbohI, OsRbohF, OsNOX8, NOX8, OsRboh8, Rboh8,rbohH, OsrbohH, Os rbohH, OsNox9, Nox9, OsRboh9, Rboh9, Os-RbohH, RbohH ,rbohB, OsrbohB, Os rbohB, OsRbohB, OsNox1, Nox1, Os-RbohB, RbohB, OsRboh1, Rboh1,rbohD, OsrbohD, Os rbohD, OsRbohD, OsNox4, OsRboh4, Rboh4,rbohG, OsrbohG, Os rbohG, OsRbohG, OsNox7, Nox7, OsrbohB, OsRBOHB, RBOHB, OsRboh7, Rboh7
42850	26775680	Do H., Kim I.S., Jeon B.W., Lee C.W., Park A.K., Wi A.R., Shin S.C., Park H., Kim Y.S., Yoon H.S., Kim H.W., Lee J.H.	Structural understanding of the recycling of oxidized ascorbate by dehydroascorbate reductase (OsDHAR) from Oryza sativa L. japonica.	Sci Rep	6	19498	2016	DHAR1	OsDHAR1, DHAR, cytDHAR, OscytDHAR, OsDHAR
42851	27064905	Sreedhar R., Kaul Tiku P.	Cupincin: A Unique Protease Purified from Rice (Oryza sativa L.) Bran Is a New Member of the Cupin Superfamily.	PLoS ONE	11(4)	e0152819	2016	CDP3.1 ,_	OsEnS-57, EnS-57, OsCDP3.1, OsCDP3.10, CDP3.10,
42852	26959651	Dey A., Samanta M.K., Gayen S., Sen S.K., Maiti M.K.	Enhanced Gene Expression Rather than Natural Polymorphism in Coding Sequence of the OsbZIP23 Determines drought tolerance and Yield Improvement in Rice Genotypes.	PLoS ONE	11(3)	e0150763	2016	LEA3-1,RAB16B,RAB16A,BZIP23	OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3, OsLEA3A, LEA3A,rab21, OsLEA28, OsRAB16D, OsRab16d, Rab16d, OsRAB16b, XERO1, OsXERO1, OsRD22, RD22,Rab16A, rab21, RAB21, OsRab21, OsRAB21, OsRAB-21, OsRab16A, OsLEA29, rab16A, OsRAB16A,OsbZIP23, OsAREB1, OsABF2, Osbzip23, OsAREB2, OsZIP23, ZIP23
42853	26744119	Bai X., Huang Y., Mao D., Wen M., Zhang L., Xing Y.	Regulatory role of FZP in the determination of panicle branching and spikelet formation in rice.	Sci Rep	6	19022	2016	COG1,MADS7,FZP,LHS1,MFO1,RFL,MADS58	OsMADS17, MADS17, NMADS3, RMADS213, nmads3,OsMADS7, OsMADS45, FDRMADS1, RMADS216, AGL6, M79, MADS45, Os MADS7, Os MADS45, OsMADS7/45,fzp*, fzp, OsBD1, BD1, OsERF#078, OsERF078, OsERF78, ERF78, AP2/EREBP#133, AP2/EREBP133, BFL1, SGDP7, OsSGDP7,OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO, OsLHS1, OsLG3b, LG3b, qLGY3, LGY3, DLN80, OsDLN80, OLR, OsOLR, GW3p6, OsGW3p6, OsMADS1GW3p6, MADS1GW3p6, qLGY3/OsLG3b/GW3p6,OsMADS6, MADS6, OsMFO1,RFL, OSL, FL, APO2, APO2/RFL, SSC, SSC/RFL/APO2, OsRFL, OsFL, OsAPO2, OsSSC,OsMADS58
42854	26826052	Chen J., Zhang Y., Tan Y., Zhang M., Zhu L., Xu G., Fan X.	Agronomic nitrogen-use efficiency of rice can be increased by driving OsNRT2.1 expression with the OsNAR2.1 promoter.	Plant Biotechnol. J.			2016	NAR2.1,NRT2.1	OsNAR2.1, OsNRT3.1A,OsNRT2.1, OsNRT2.2
42855	26795142	Jeong H.J., Yang J., Cho L.H., An G.	OsVIL1 controls flowering time in rice by suppressing OsLF under short days and by inducing Ghd7 under long days.	Plant Cell Rep.	35(4)	905-20	2016	RFT1,VIL1,HD3A,GHD7,LC2,EF1,_,EMF2B	FT-L 3, OsFTL3, FTL3, FT-L3, RFT, OsRFT1,OsVIL1, OsVIL2,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,Ghd2, Ghd7, OsGhd7, OsCCT26, OsCMF8, OsI, Ghd7/Hd4, Hd4, EH7-1/Hd4, Ghd7-0a, EH7-1, EH7/Ghd7, EH7, OsEH7, GLW7.1, OsGLW7.1,OsLC2, OsVIL2, VIL2, OsVIL3,Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,OsLF, LF, OsbHLH119,OsEMF2b, EMF2b, GW9, OsGW9, GW9/OsEMF2b 
42856	26758286	Zheng K., Tian H., Hu Q., Guo H., Yang L., Cai L., Wang X., Liu B., Wang S.	Ectopic expression of R3 MYB transcription factor gene OsTCL1 in Arabidopsis, but not rice, affects trichome and root hair formation.	Sci Rep	6	19254	2016	TCL2,PS,TTG1B,RC,TCL1,GL1A,_,PA,ROC9,TTG1A,GL1B	OsTCL2,Ra*, bhlh13, OsbHLH013, OsbHLH13, Ra, OSB1, Ra1, OsGL3A, GL3A, OsB2, OsMYC7, MYC7, OsPs, Ps, OsHLH1, HLH1,OsTTG1B,Rc, OsbHLH017, OsbHLH17, SD7-1, qSD7-1/qPC7, OsGL3C, GL3C,OsTCL1,R2R3-MYB, OsGL1A, DLN218, OsDLN218, OsMYB102, MYB102, Os2R_MYB81, 2R_MYB81 ,OsMyb4, OSMYB4, MYB4, OsEnS-11, OsGL1C, GL1C, OsMYB13, MYB13, Os2R_MYB11, 2R_MYB11 ,OsbHLH015, OsbHLH15, bHLH15, OsGL3B, GL3B, OsMYC6, MYC6, OsPa, Pa, OsHLH2, HLH2,Roc9(t), Roc9, GL2-9, OsGL2, GL2, OsHDZ2, HDZ2, OsHDZIP2, HDZIP2,OsWD40-50, WD40-50, OsTTG1A, OsTTG1, TTG1 ,OsGL1B
42857	27055010	Ma J., Cheng Z., Chen J., Shen J., Zhang B., Ren Y., Ding Y., Zhou Y., Zhang H., Zhou K., Wang J.L., Lei C., Zhang X., Guo X., Gao H., Bao Y., Wan J.M.	Phosphatidylserine Synthase Controls Cell Elongation Especially in the Uppermost Internode in Rice by Regulation of Exocytosis.	PLoS ONE	11(4)	e0153119	2016	BC7,SUI2,SUI1,SUI3	OsCesA4, OsCESA4, CESA4, OS_CESA04, BC11, bc7t, Bc7(t), bc-7, OsCesA 4, CesA4, FC17/CESA4, FC17, OsFC17,OsSUI2, ES5, OsES5,OsSUI1, OsPSS-1, PSS-1, OsPSS1, PSS1,OsSUI3
42858	26973672	Sui Z., Wang T., Li H., Zhang M., Li Y., Xu R., Xing G., Ni Z., Xin M.	Overexpression of Peptide-Encoding OsCEP6.1 Results in Pleiotropic Effects on Growth in Rice (O. sativa).	Front Plant Sci	7	228	2016	CEP9,CEP7,CEP11,CEP14,CEP3,CEP12,CEP2,CEP10,CEP8,CEP6,CEP1,CEP6,CEP5,CEP15,CEP13	OsCEP9, OsCEP11, CEP11,OsCEP7, OsCEP7.1, CEP7.1,OsCEP11, OsCEP10, CEP10,OsCEP14, OsCEP9, CEP9,OsCEP3, OsCEP6, CEP6,OsCEP12, OsCEP7, CEP7,OsCEP2, OsCEP4, CEP4, OsCEP5, CEP5,OsCEP10, OsCEP12, CEP12,OsCEP7,CEP7, OsCEP8, OsCEP1, CEP1,OsCEP6, OsCEP6.1, CEP6.1, OsCEP13, CEP13,OsCEP1, OsCEP4, CEP4,OsCEP6, OsCEP3, CEP3,OsCEP5, OsCEP14, CEP14,OsCEP15,OsCEP13, OsCEP8, CEP8
42859	27148296	Li S., Yue W., Wang M., Qiu W., Zhou L., Shou H.	Mutation of OsGIGANTEA Leads to Enhanced Tolerance to Polyethylene Glycol-Generated Osmotic Stress in Rice.	Front Plant Sci	7	465	2016	RFT1,ERF3,HD3A,LEA3-1,DHN1,RAB16A,ERF91,GI,SALT,DREB1E	FT-L 3, OsFTL3, FTL3, FT-L3, RFT, OsRFT1,AP37, OsAP37, OsERF3, OsERF#075, OsERF075, OsERF75, ERF75, AP2/EREBP#004, AP2/EREBP4, OsBIERF2, BIERF2, DLN23, OsDLN23,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3, OsLEA3A, LEA3A,LIP9, OsLIP9, lip9, DHN1, DIP1, OsDip1, OsLEA23, OsDhn1, COR410, OsLEA23/DIP1, DIP1/OsLEA23,Rab16A, rab21, RAB21, OsRab21, OsRAB21, OsRAB-21, OsRab16A, OsLEA29, rab16A, OsRAB16A,OsERF#091, OsERF091, OsERF91, AP59, OsAP59, AP2/EREBP#147, AP2/EREBP147, OsBIERF3, BIERF3,OsGI, Gi, Os-GI,salT*(sal1), SalT1*, sal1, Sal1, SALT, ML, SalT, OsSalT, OsJRL, JRL, Osl43, OsL43, OsMBL1, MBL1, OsJRL01, JRL01, OsJRL1, JRL1,OsDREB1E, OsERF030, OsERF#030, OsERF30, ERF30, AP2/EREBP#160, AP2/EREBP160, OsDREB1-1
42860	27200067	Qin C., Cheng L., Zhang H., He M., Shen J., Zhang Y., Wu P.	OsGatB, the Subunit of tRNA-Dependent Amidotransferase, Is Required for Primary Root Development in Rice.	Front Plant Sci	7	599	2016	GATB	OsGatB, GatB
42861	26870074	Sharma S., Kaur C., Singla-Pareek SL., Sopory S.K.	OsSRO1a Interacts with RNA Binding Domain-Containing Protein (OsRBD1) and Functions in Abiotic Stress Tolerance in Yeast.	Front Plant Sci	7	62	2016	BOC1,_,_,_,_,TWI1	OsSRO1c, SRO1c, OsBOC1,OsSRO1e, SRO1e,OsSRO1d, SRO1d,OsRBD1, RBD1,OsSRO1b, SRO1b,OsSRO1a, SRO1a, OsTWI1, RCD1, OsRCD1
42862	27200010	Li Q., Deng Z., Gong C., Wang T.	The Rice Eukaryotic Translation Initiation Factor 3 Subunit f (OseIF3f) Is Involved in Microgametogenesis.	Front Plant Sci	7	532	2016	_,EIF3H,EIF3M,_,_,EIF3K,EIF3A,EIF3D,EIF3F,EIF3E,EIF3B,EIF3L,EIF3G,_	OsWD40-159, Cen8.t00757, OseIF3i, eIF3i, EIF3I,  OsDWD53, DWD53,eIF-3h, OseIF3h,eIF-3m, OseIF3m,eIF-3c, OseIF3c, EIF3C,eIF-3c, OseIF3c, EIF3C,eIF-3k, OseIF3k,eIF-3a, OseIF3a,eIF-3d, OseIF3d,eIF-3f, OseIF3f,eIF-3e, OseIF3e,eIF-3b, OseIF3b,eIF-3l, OseIF3l,eIF-3g, OseIF3g, RBP-43 ,OsWD40-116, OseIF3i, eIF3i, EIF3I,  OsDWD52, DWD52
42863	26834774	Hong Y., Zhang H., Huang L., Li D., Song F.	Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and salt tolerance in Rice.	Front Plant Sci	7	4	2016	LEA3-1,NCED2,ERF3,PP2C1,PSY3,P5CS,NCED1,NCED3,RAB16A,2R_MYB36 ,NAC22,BZIP23,DREB2A,NCED1,PP2C49	OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3, OsLEA3A, LEA3A,OSNCED2, OsNCED2, OsNCED5, NCED5,AP37, OsAP37, OsERF3, OsERF#075, OsERF075, OsERF75, ERF75, AP2/EREBP#004, AP2/EREBP4, OsBIERF2, BIERF2, DLN23, OsDLN23,OsPP2C1, OsSIPP2C1, SIPP2C1, OsPP2C68, PP2C68, OsPP108,OsPSY, PSY, OsPSY3,OsP5CS, P5CS1, OsP5CS1, OsALDH18B1, ALDH18B1, OsP5CS-1, P5CS-1,OsNCED1, OsCCD4a, CCD4a,OSNCED3, OsNCED-3, OsNCED3, OsNCED3a, NCED3a, OsNCED4, NCED4, OsNECD2, OsNCED2b, NCED2b ,Rab16A, rab21, RAB21, OsRab21, OsRAB21, OsRAB-21, OsRab16A, OsLEA29, rab16A, OsRAB16A,OsMYB2, MYB2, Os2R_MYB36 ,ONAC022, ONAC22,OsbZIP23, OsAREB1, OsABF2, Osbzip23, OsAREB2, OsZIP23, ZIP23,OsDREB2A, OsDREB2a, ERF40, OsERF#040, OsERF040, OsERF40, AP2/EREBP#167, AP2/EREBP167,OSNCED1, OsNCED-1, OsNCED3, OsNced3, NCED3, OsNCED9, NCED9,OsPP2C49, OsPP76, PP76
42864	26748915	Hwang S.K., Singh S., Cakir B., Satoh H., Okita T.W.	The plastidial Starch phosphorylase from rice endosperm: catalytic properties at low temperature.	Planta	243(4)	999-1009	2016	PHO2,PHO1	Pho2, OsPho2, OsPHOH, PHOH,Pho1, OsPho1, OsPHOL, PHOL, OsPHOI, PHOI
42865	26747563	Huo C., Zhang B., Wang H., Wang F., Liu M., Gao Y., Zhang W., Deng Z., Sun D., Tang W.	Comparative Study of Early Cold-Regulated Proteins by Two-Dimensional Difference Gel Electrophoresis Reveals a Key Role for Phospholipase Dalpha1 in Mediating Cold Acclimation Signaling Pathway in Rice.	Mol. Cell Proteomics	15(4)	1397-411	2016	DREB1A,PLDalpha1,SIZ1	OsDREB1A, Os DREB1A, CBF3, OsCBF3, OsDREB1A/OsCBF3, ERF24, OsERF24, OsERF024, OsERF#024, AP2/EREBP#114, AP2/EREBP114, OsDREBL,RPLD1, PLD1, OsPLDalpha1, OsC2DP2, C2DP2,OsSIZ1, OsSIZ1.1, OsSIZ1.2, OsSIZ1.3, DLN131, OsDLN131, OsPHD23, PHD23
42866	26812961	Sakamoto S., Takata N., Oshima Y., Yoshida K., Taniguchi T., Mitsuda N.	Wood reinforcement of poplar by rice NAC transcription factor.	Sci Rep	6	19925	2016	_	ONAC007, ONAC7, OsSND1, SND1, OsSWN1, SWN1, DLN157, OsDLN157
42867	26798026	Li Q., Yan W., Chen H., Tan C., Han Z., Yao W., Li G., Yuan M., Xing Y.	Duplication of OsHAP family genes and their association with heading date in rice.	J. Exp. Bot.	67(6)	1759-68	2016	HAP2K,HAP5K,HAP2B,HAP5C,HAP2F,HAP2E,HAP5A,HAP3I,HAP2J,HAP5H,HD5,HAP2A,HAP5G,HAP5F,HAP2H,HAP3J,HAP3G,HAP3D,HAP5I,HAP5J,LEC1,HAP2D,HAP3L,HAP5L,HAP5B,HAP3B,HAP3A,HAP5D,HAP2G,HAP5E,HAP3K,HAP3C,HAP2I,HAP2C,HAP3F	OsHAP2K, NF-YA11, OsNF-YA11, NFYA11,OsHAP5K, OsNF-YC11, NF-YC11, OsNF-YC12, NF-YC12, NFYC12,OsHAP2B, NF-YA, CBF-B, NF-YA9, OsNF-YA9, NFYA9,OsHAP5C, NF-YC, CBF-C, OsNF-YC2, Os-NF-YC2, NF-YC2, NFYC2, OsNF-YC4-1, NF-YC4-1,OsHAP2F, NF-YA, CBF-B, NF-YA10, OsNF-YA10, NFYA10,OsHAP2E, NF-YA, CBF-B, NF-YA2, OsNF-YA2, NFYA2,OsHAP5A, NF-YC, CBF-C, OsNF-YC1, Os-NF-YC1, NF-YC1, NFYC1 , OsNF-YC4-2, NF-YC4-2,OsHAP3I, NF-YB, CBF-A, NF-YB8, OsNF-YB8, NFYB8,OsHAP2J, NF-YA, CBF-B, NF-YA5, OsNF-YA5, NFYA5,OsHAP5H, OsNF-YC9, NF-YC9, NFYC9,Hd5(t)*, Hd5, qHD5, HAP3H, OsHAP3H, NF-YB, CBF-A, DTH8 , qHD5(t)*, Ghd8, Ghd8/DTH8, Lhd1, NF-YB11, OsNF-YB11, NFYB11, LH8, DTH8/Ghd8, RH8, DTH8/Ghd8/LHD1, CAR8, DTH8/Ghd8/ OsHAP3H, EF8, OsEF8,OsHAP2A, NF-YA, CBF-B, NF-YA7, OsNF-YA7, NFYA7,OsHAP5G, NF-YC, CBF-C, OsNF-YC3, Os-NF-YC3, NF-YC3, NFYC3,OsHAP5F, NF-YC, CBF-C, OsNF-YC5, Os-NF-YC5, NF-YC5, NFYC5,OsHAP2H, NF-YA, CBF-B, NF-YA3, OsNF-YA3, NFYA3,OsHAP3J, NF-YB, CBF-A, OsNF-YB5, NF-YB5, NF-YB5,OsHAP3G, NF-YB, CBF-A, OsNF-YB6, NF-YB6, NFYB6,OsHAP3D, OsEnS-83, OsNF-YB9, NF-YB9, NFYB9, OsLEC1A, LEC1A,OsEnS-5, OsHAP5I, OsNF-YC10, NF-YC10, NFYC10,OsHAP5J, OsNF-YC8, NF-YC8, NFYC8,OsHAP3E, HAP3E, OsLEC1/OsHAP3E, OsLEC1, LEC1, OsNF-YB7, NF-YB7, NFYB7, L1L ,OsHAP2D, NF-YA, CBF-B, NF-YA4, OsNF-YA4, NFYA4,OsHAP3L,OsEnS-133, OsHAP5L, OsNF-YC12, NF-YC12, OsNF-YC11, NF-YC11, NFYC11,OsHAP5B, NF-YC, CBF-C, OsNF-YC4, Os-NF-YC4, NF-YC4, NFYC4, OsNF-YC4-3, NF-YC4-3,OsHAP3B, OsNF-YB-3, NFYB3, OsNF-YB4, NF-YB4, NFYB4, OsHAP3C, HAP3C,OsHAP3A,OsNF-YB-2, NFYB2, NF-YB2,OsHAP5D, NF-YC, CBF-C, OsNF-YC6, Os-NF-YC6, NF-YC6, NFYC6,OsHAP2G, NF-YA, CBF-B, NF-YA6, OsNF-YA6, NFYA6,OsHAP5E, NF-YC, CBF-C, OsNF-YC7, Os-NF-YC7, NF-YC7, NFYC7,OsHAP3K/OsNF-YB1, OsHAP3K, OsNF-YB1, NF-YB1, nf-yb1, OsLEC1, OsNF-YB-1, NFYB1, OsEnS-41,OsHAP3C, OsNF-YB-4, NFYB4, OsNF-YB3, NF-YB3, NFYB3, OsHAP3B, HAP3B,OsHAP2I, NF-YA, CBF-B, NF-YA8, OsNF-YA8, OsEnS-136, NFYA8,OsHAP2C, NF-YA, CBF-B, NF-YA1, OsNF-YA1, NFYA1,OsHAP3F, NF-YB, CBF-A, NF-YB10, OsNF-YB10, NFYB10
42868	27066017	Zhang M., Deng X., Yin L., Qi L., Wang X., Wang S., Li H.	Regulation of Galactolipid Biosynthesis by Overexpression of the Rice MGD Gene Contributes to Enhanced Aluminum Tolerance in Tobacco.	Front Plant Sci	7	337	2016	MGD2	OsMGD, MGD, OsMGD2, OsMGDG3, MGDG3
42869	26732528	Ghosh A., Kushwaha H.R., Hasan M.R., Pareek A., Sopory S.K., Singla-Pareek SL.	Presence of unique glyoxalase III proteins in plants indicates the existence of shorter route for methylglyoxal detoxification.	Sci Rep	6	18358	2016	_,_,_,_,_,_	OsDJ-1E, DJ-1E,OsDJ-1B, DJ-1B,OsDJ-1D, DJ-1D, OsDJ-1D.1, OsDJ-1D.2, OsDJ-1D.3, OsDJ-1D.4, OsDJ-1D.5,OsDJ-1F, DJ-1F,OsDJ-1C, DJ-1C, OsDJ-1C.1, OsDJ-1C.2, OsDJ-1C.3,OsDJ-1A, DJ-1A
42870	26901100	Fang H., Meng Q., Zhang H., Huang J.	Knock-down of a RING finger gene confers cold tolerance.	Bioengineered	7(1)	39-45	2016	SRFP1	OsSRFP1,  OsRING157, RING157, SDEL2, OsSDEL2
42871	26795719	Harkenrider M., Sharma R., De Vleesschauwer D., Tsao L., Zhang X., Chern M., Canlas P., Zuo S., Ronald P.C.	Overexpression of Rice Wall-Associated Kinase 25 (OsWAK25) Alters Resistance to Bacterial and Fungal Pathogens.	PLoS ONE	11(1)	e0147310	2016	NH1,XB15,WAK25	OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2, DLN5, OsDLN5,  OsBTBA1, BTBA1,XB15, OsPP2C35, PP2C35, OsPP59, SIP35 ,OsWAK25
42872	27092147	Saenchai C., Bouain N., Kisko M., Prom-U-Thai C., Doumas P., Rouached H.	The Involvement of OsPHO1;1 in the Regulation of Iron Transport Through Integration of Phosphate and Zinc Deficiency Signaling.	Front Plant Sci	7	396	2016	PHO1;1	OsPHO1;1
42873	26788958	Hwang S.G., Park H.M., Han A.R., Jang C.S.	Molecular characterization of Oryza sativa arsenic-induced RING E3 ligase 1 (OsAIR1): Expression patterns, localization, functional interaction, and heterogeneous overexpression.	J. Plant Physiol.	191	140-8	2016	_,C3H41,_,PPS,HIRP1,_,_	OsRFP ,  OsRING384, RING384,OsC3H41, MKRN, OsRING387, RING387, OsCPSF30-L3, CPSF30-L3,OsAIR1, AIR1,  OsRING172, RING172,OsWD40-55, OsCOP1, COP1, YEL, OsYEL, OsPPS, COP1-1, OsCOP1-1,  OsRING347, RING347,OsRFP, OsHIRP1, DLN82, OsDLN82, OsPHD14, PHD14,  OsRING365, RING365,OsRFP ,  OsRING152, RING152,OsRFP ,  OsRING128, RING128
42874	26804776	Kabir A.H.	Biochemical and molecular changes in rice seedlings (Oryza sativa L.) to cope with chromium stress.	Plant Biol (Stuttg)			2016	IRT1,_	OsIRT1, ZIP10, OsZIP10, OsZIP12, ZIP12,OsFRO7, FRO7, OsFRO1 ,FRO1
42875	26754668	Cakir B., Shiraishi S., Tuncel A., Matsusaka H., Satoh R., Singh S., Crofts N., Hosaka Y., Fujita N., Hwang S.K., Satoh H., Okita T.W.	Analysis of the Rice ADP-Glucose Transporter (OsBt1) Indicates the Presence of Regulatory Processes in the Amyloplast Stroma That Control ADP-Glucose Flux into Starch.	Plant Physiol.	170(3)	1271-83	2016	BT1-1	OsBT1-1, OsEnS-29, OsBT1, OsBt1, BT1, Bt1, OsBt1-1, shr3, OsBT1-2, BT1-2
42876	26767749	Cho S.H., Kang K., Lee S.H., Lee I.J., Paek N.C.	OsWOX3A is involved in negative feedback regulation of the gibberellic acid biosynthetic pathway in rice (Oryza sativa).	J. Exp. Bot.	67(6)	1677-87	2016	NAL3,KAO,NAL2	nal3(nal2), nal2, nal3, cul3, OsWOX3A, WOX3A, WOX3, OsWOX3, OsNS, OsNS1/OsNS2, OsPRS,OsKAO, kao, CYP88A5, OSKAO, Os KAO, RPE1, KO1,nal2, nal3, cul2, OsWOX3A, WOX3A, Os NS, NS, OsNS, OsWOX3, OsNS1/OsNS2, OsPRS
42877	26786707	Suzuki K., Yamaji N., Costa A., Okuma E., Kobayashi N.I., Kashiwagi T., Katsuhara M., Wang C., Tanoi K., Murata Y., Schroeder J.I., Ma J.F., Horie T.	OsHKT1;4-mediated Na(+) transport in stems contributes to Na(+) exclusion from leaf blades of rice at the reproductive growth stage upon salt stress.	BMC Plant Biol.	16	22	2016	HKT7	OsHKT7, OsHKT1;4, HKT1;4
42878	26973678	Ding Y., Ye Y., Jiang Z., Wang Y., Zhu C.	MicroRNA390 Is Involved in Cadmium Tolerance and Accumulation in Rice.	Front Plant Sci	7	235	2016	HMA2,_,LCD1,MIR390	OsHMA2, osHMA2, OsHMA2v ,OsSRK, SRK,NRAMP5, OsNRAMP5, OsNramp5, OsLCD1,OsmiR390, miR390, osa-MIR390osa-miR390, osa-miR390-3p, osa-miR390-5p
42879	27096703	Chen B., Wang Y.	Proteomic and Physiological Studies Provide Insight into Photosynthetic Response of Rice (Oryza sativa L.) Seedlings to Microgravity.	Photochem. Photobiol.			2016		
42880	27053722	Bailey K.J., Leegood R.C.	Nitrogen recycling from the xylem in rice leaves: dependence upon metabolism and associated changes in xylem hydraulics.	J. Exp. Bot.	67(9)	2901-11	2016		
42881	27043481	Kimball B.A.	Crop responses to elevated CO2 and interactions with H2O, N, and temperature.	Curr. Opin. Plant Biol.	31	36-43	2016		
42882	27076183	Chandran A.K., Lee G.S., Yoo Y.H., Yoon U.H., Ahn B.O., Yun D.W., Kim J.H., Choi H.K., An G., Kim T.H., Jung K.H.	Functional classification of rice flanking sequence tagged genes using MapMan terms and global understanding on metabolic and regulatory pathways affected by DXR mutant having defects in light response.	Rice (N Y)	9(1)	17	2016		
42883	27026054	Jiang S.Y., Ramachandran S.	Expansion Mechanisms and Evolutionary History on Genes Encoding DNA Glycosylases and Their Involvement in Stress and Hormone Signaling.	Genome Biol Evol	8(4)	1165-84	2016		
42884	25641865	Liu S.M., Li J., Zhu J.Q., Wang X.W., Wang C.S., Liu S.S., Chen X.X., Li S.	Transgenic plants expressing the AaIT/GNA fusion protein show increased resistance and toxicity to both chewing and sucking pests.	Insect Science	23(2)	265-76	2016		
42885	27111722	Steuernagel B., Periyannan S.K., Hern?ndez-Pinz?n I., Witek K., Rouse M.N., Yu G., Hatta A., Ayliffe M., Bariana H., Jones J.D., Lagudah E.S., Wulff B.B.	Rapid cloning of disease-resistance genes in plants using mutagenesis and sequence capture.	Nat. Biotechnol.			2016		
42886	27110682	Zhao H., Frank T., Tan Y., Zhou C., Jabnoune M., Arpat A.B., Cui H., Huang J., He Z., Poirier Y., Engel K.H., Shu Q.	Disruption of OsSULTR3;3 reduces phytate and phosphorus concentrations and alters the metabolite profile in rice grains.	New Phytol.			2016	SAT1;1,APRL3,ITPK6,SAT3,APRL1,SPX1,PT8,IPS1,ITPK1,_,ATPS,ITPK3,SPX2,LPA,ITPK4,PAP10A,APRL5,_	OsSAT, SAT, OsSAT1;1,OsAPRL3,OsITPK6, OsITP5/6K-6, ITP5/6K-6,OsSAT, SAT, OsSAT3,OsAPRL1, OsAPR1, APR1,OsSPX1,OsPT8, PHT1-8, OsPht1;8, Pht1;8, PHT1;8, OsPHT1;8,OsIPS1,OsITPK1, OsITP5/6K-1, ITP5/6K-1, OsITL2,OsIPK1, IPK1,OsATPS, OsaATPS, PAPSS,OsITPK3, OsITP5/6K-3, ITP5/6K-3, OsIPK1,OsSPX2,OsSultr3;3, OsSul3;3, SULTR3;3 ,OsITPK4, OsITP5/6K-4, ITP5/6K-4,OsPAP10a, PAP10, OsPAP2, PAP2,OsAPRL5,LDC, PAP15, OsPAP15 
42887	27110776	Zong J.M., Li X.W., Zhou Y.H., Wang F.W., Wang N., Dong Y.Y., Yuan Y.X., Chen H., Liu X.M., Yao N., Li H.Y.	The AaDREB1 Transcription Factor from the Cold-Tolerant Plant Adonis amurensis Enhances Abiotic Stress Tolerance in Transgenic Plant.	Int J Mol Sci	17(4)		2016		
42888	27122572	Farooq M.A., Detterbeck A., Clemens S., Dietz K.J.	Silicon-induced reversibility of cadmium toxicity in rice.	J. Exp. Bot.			2016		
42889	27084974	Fan S., Tian F., Li J., Hutchins W., Chen H., Yang F., Yuan X., Cui Z., Yang C.H., He C.	Identification of phenolic compounds that suppress the virulence of Xanthomonas oryzae on rice via the type III secretion system.	Mol. Plant Pathol.			2016		
42890	27208287	Zhang Z., Tan J., Shi Z., Xie Q., Xing Y., Liu C., Chen Q., Zhu H., Wang J., Zhang J., Zhang G.	albino leaf 1 that Encodes the sole Octotricopeptide Repeat Protein Is Responsible for Chloroplast Development in Rice.	Plant Physiol.			2016	PSBA,PSAA,YGL10,AL1 ,PSAE,RBCL,PSAB,PSBP,LHCB2.1,PSAD,PSBO,RBCS3,RPOB	PsbA, psbA, OsPsbA, PSBD1, OsPSBD1, psbD1,PsaA, psaA, PsAA1, psaA1,CAO, OsCAO, CAO1, OsCAO1, Oslls1, Lls1, DVR, PGL,AL1a, AL1b, AL1c ,PsaE, OsPsaE,rbcL, rbcA, OsrbcL,PsaB, psaB, PsAA2, psaA2,PsbP, OsPsbP, psbP,LHCB, LHCP II, Lhcb2, OsLhcb2, Lhcb2.1, OsLhcb2.1 ,PsaD, OsPsaD,PsbO, psbO, OsPSBO,RbcS3, OsRBCS3, OsRbcS3, rbcS ,rpoB, RpoB, Rpobeta
42891	27109389	Manna M., Achary V.M., Islam T., Agrawal P.K., Reddy M.K.	The development of a phosphite-mediated fertilization and weed control system for rice.	Sci Rep	6	24941	2016		
42892	27094318	Wu M., Li Y., Chen D., Liu H., Zhu D., Xiang Y.	Genome-wide identification and expression analysis of the IQD gene family in moso bamboo (Phyllostachys edulis).	Sci Rep	6	24520	2016		
42893	26991395	Huang S., Antony G., Li T., Liu B., Obasa K., Yang B., White F.F.	The broadly effective recessive resistance gene xa5 of rice is a virulence effector-dependent quantitative trait for bacterial blight.	Plant J.	86(2)	186-94	2016		
42894	27039184	Lee Y.S., Yi J., An G.	OsPhyA modulates rice flowering time mainly through OsGI under short days and Ghd7 under long days in the absence of phytochrome B.	Plant Mol. Biol.			2016		
42895	27077850	Li X., Shahid M.Q., Wu J., Wang L., Liu X., Lu Y.	Comparative Small RNA Analysis of pollen Development in Autotetraploid and Diploid Rice.	Int J Mol Sci	17(4)		2016		
42896	27106031	Gan L., Wang X., Cheng Z., Liu L., Wang J., Zhang Z., Ren Y., Lei C., Zhao Z., Zhu S., Lin Q., Wu F., Guo X., Wang J., Zhang X., Wan J.	Wax crystal-sparse leaf 3 encoding a beta-ketoacyl-CoA reductase is involved in cuticular wax biosynthesis in rice.	Plant Cell Rep.			2016		
42897	27061745	Cosme M., Lu J., Erb M., Stout M.J., Franken P., Wurst S.	A fungal endophyte helps plants to tolerate root herbivory through changes in gibberellin and jasmonate signaling.	New Phytol.			2016		
42898	26956504	Dreni L., Zhang D.	Flower development: the evolutionary history and functions of the AGL6 subfamily MADS-box genes.	J. Exp. Bot.	67(6)	1625-38	2016		
42899	27126603	Wang Y., Ji K., Shen S., Chen H.	Probing molecular events associated with early development of thylakoid membranes by comparative proteomics and low temperature fluorescence.	J Proteomics			2016		
42900	27118394	Zhang F., Xu T., Mao L., Yan S., Chen X., Wu Z., Chen R., Luo X., Xie J., Gao S.	Genome-wide analysis of Dongxiang wild rice (Oryza rufipogon Griff.) to investigate lost/acquired genes during rice domestication.	BMC Plant Biol.	16(1)	103	2016		
42901	26882848	Chen Y.C., Lai M.H., Wu C.Y., Lin T.C., Cheng A.H., Yang C.C., Wu H.Y., Chu S.C., Kuo C.C., Wu Y.F., Lin G.C., Tseng M.N., Tsai Y.C., Lin C.C., Chen C.Y., Huang J.W., Lin H.A., Chung C.L.	The Genetic Structure, Virulence, and Fungicide Sensitivity of Fusarium fujikuroi in Taiwan.	Phytopathology	106(6)	624-35	2016		
42902	27172200	Tong J., Han Z., Han A., Liu X., Zhang S., Fu B., Hu J., Su J., Li S., Wang S., Zhu Y.	Sdt97, a Point Mutation in 5' Untranslated Region, Confers Semi-dwarfism in Rice.	G3 (Bethesda)			2016	_	Sdt97 
42903	27111837	Galbiati F., Chiozzotto R., Locatelli F., Spada A., Genga A., Fornara F.	Hd3a, RFT1 and Ehd1 integrate photoperiodic and drought stress signals to delay the floral transition in rice.	Plant Cell Environ.			2016		
42904	27040682	Yu Y., Yang D., Zhou S., Gu J., Wang F., Dong J., Huang R.	The ethylene response factor OsERF109 negatively affects ethylene biosynthesis and drought tolerance in rice.	Protoplasma			2016		
42905	27050503	Jung J.W., Kim N.S., Jang S.H., Shin Y.J., Yang M.S.	Production and characterization of recombinant human acid alpha-glucosidase in transgenic rice cell suspension culture.	J. Biotechnol.	226	44-53	2016		
42906	27048369	Toda Y., Wang Y., Takahashi A., Kawai Y., Tada Y., Yamaji N., Ma J.F., Ashikari M., Kinoshita T.	Oryza sativa H+-ATPase (OSA) is involved in the regulation of dumbbell-shaped guard cells of rice.	Plant Cell Physiol.			2016		
42907	26979939	Yamamoto K., Sakamoto H., Momonoki Y.S.	Altered expression of acetylcholinesterase gene in rice results in enhancement or suppression of shoot gravitropism.	Plant Signal Behav	11(4)	e1163464	2016	GELP92	OsGELP92, OsGELP92a, OsGELP92b, OsGELP92c, AChE
42908	27040147	Kudo T., Sasaki Y., Terashima S., Matsuda-Imai N., Takano T., Saito M., Kanno M., Ozaki S., Suwabe K., Suzuki G., Watanabe M., Matsuoka M., Takayama S., Yano K.	Identification of reference genes for quantitative expression analysis using large-scale RNA-seq data of Arabidopsis thaliana and model crop plants.	Genes Genet. Syst.			2016		
42909	27108120	Mehra P., Giri J.	Rice and chickpea GDPDs are preferentially influenced by low phosphate and CaGDPD1 encodes an active glycerophosphodiester phosphodiesterase enzyme.	Plant Cell Rep.			2016		
42910	27055266	Wang P., Vlad D., Langdale J.A.	Finding the genes to build C4 rice.	Curr. Opin. Plant Biol.	31	44-50	2016		
42911	27102613	Sun L., Yu Y., Hu W., Min Q., Kang H., Li Y., Hong Y., Wang X., Hong Y.	Ribosomal protein S6 kinase1 coordinates with TOR-Raptor2 to regulate thylakoid membrane biosynthesis in rice.	Biochim. Biophys. Acta	1861(7)	639-49	2016		
42912	27111707	Kaur G., Pati P.K.	Analysis of cis-acting regulatory elements of Respiratory burst oxidase homolog (Rboh) gene families in Arabidopsis and rice provides clues for their diverse functions.	Comput Biol Chem	62	104-118	2016		
42913	27031005	Hu L., Ye M., Li R., Lou Y.	OsWRKY53, a versatile switch in regulating herbivore-induced defense responses in rice.	Plant Signal Behav	11(4)	e1169357	2016		
42914	27105887	Flematti G.R., Scaffidi A., Waters M.T., Smith S.M.	Stereospecificity in strigolactone biosynthesis and perception.	Planta	243(6)	1361-73	2016		
42915	27090184	Sohn S.I., Oh Y.J., Kim B.Y., Cho H.S.	Effect of CaMSRB2-Expressing Transgenic Rice Cultivation on Soil Microbial Communities.	J. Microbiol. Biotechnol.			2016		
42916	26818077	Fu Y.B., Peterson G.W., Dong Y.	Increasing Genome Sampling and Improving SNP Genotyping for Genotyping-by-Sequencing with New Combinations of Restriction Enzymes.	G3 (Bethesda)	6(4)	845-56	2016		
42917	27208223	Zhu C.Q., Zhu X.F., Hu A.Y., Wang C., Wang B., Dong X.Y., Shen R.F.	Differential effects of nitrogen forms on cell wall phosphorus remobilization in rice (Oryza sativa) are mediated by nitric oxide, pectin content and the expression of the phosphate transporter OsPT2.	Plant Physiol.			2016		
42918	27063367	Rahman M.A., Thomson M.J., Shah-E-Alam M., de Ocampo M., Egdane J., Ismail A.M.	Exploring novel genetic sources of salinity tolerance in rice through molecular and physiological characterization.	Ann. Bot.	117(6)	1083-97	2016		
42919	27101874	Vigueira C.C., Small L.L., Olsen K.M.	Long-term balancing selection at the Phosphorus Starvation Tolerance 1 (PSTOL1) locus in wild, domesticated and weedy rice (Oryza).	BMC Plant Biol.	16(1)	101	2016		
42920	27129984	Galli M., Gallavotti A.	Expanding the Regulatory Network for Meristem Size in Plants.	Trends Genet.	32(6)	372-83	2016		
42921	27038090	Yan J., Wang P., Wang P., Yang M., Lian X., Tang Z., Huang C.F., Salt D.E., Zhao F.J.	A loss-of-function allele of OsHMA3 associated with high cadmium accumulation in shoots and grain of Japonica rice cultivars.	Plant Cell Environ.			2016		
42922	27173278	Zhao C.F., Chen T., Zhao Q.Y., Zhou L.H., Zhao L., Zhang Y.D., Zhu Z., Yao S., Wang C.L.	Analysis of QTLs for panicle exsertion and its relationship with yield and yield-related traits in rice (Oryza sativa L.).	Genet. Mol. Res.	15(2)		2016		
42923	26956501	Tadege M.	WOX3 in the scene: intimacy with hormones.	J. Exp. Bot.	67(6)	1605-7	2016		
42924	26853099	Cayrol B., Delteil A., Gobbato E., Kroj T., Morel J.B.	Three wall-associated kinases required for rice basal immunity form protein complexes in the plasma membrane.	Plant Signal Behav	11(4)	e1149676	2016		
42925	27072282	Rathore M., Singh R., Kumar B., Chauhan B.S.	Characterization of functional trait diversity among Indian cultivated and weedy rice populations.	Sci Rep	6	24176	2016		
42926	27068924	Fontanili L., Lancilli C., Suzui N., Dendena B., Yin Y.G., Ferri A., Ishii S., Kawachi N., Lucchini G., Fujimaki S., Sacchi G.A., Nocito F.F.	Kinetic Analysis of Zinc/Cadmium Reciprocal Competitions Suggests a Possible Zn-Insensitive Pathway for Root-to-Shoot Cadmium Translocation in Rice.	Rice (N Y)	9(1)	16	2016		
42927	26969743	Ahmad I., Mian A., Maathuis F.J.	Overexpression of the rice AKT1 potassium channel affects potassium nutrition and rice drought tolerance.	J. Exp. Bot.	67(9)	2689-98	2016	AKT1	OsAKT1, Os-AKT1
42928	26935448	Cao J., Jiang M., Li P., Chu Z.	Genome-wide identification and evolutionary analyses of the PP2C gene family with their expression profiling in response to multiple stresses in Brachypodium distachyon.	BMC Genomics	17(1)	175	2016		
42929	27029856	Liu T.Y., Huang T.K., Yang S.Y., Hong Y.T., Huang S.M., Wang F.N., Chiang S.F., Tsai S.Y., Lu W.C., Chiou T.J.	Identification of plant vacuolar transporters mediating phosphate storage.	Nat Commun	7	11095	2016		
42930	26987543	Kim S.R., Ramos J., Ashikari M., Virk P.S., Torres E.A., Nissila E., Hechanova S.L., Mauleon R., Jena K.K.	Development and validation of allele-specific SNP/indel markers for eight yield-enhancing genes using whole-genome sequencing strategy to increase yield potential of rice, Oryza sativa L.	Rice (N Y)	9(1)	12	2016	NAL1,GHD7,GS5,WFP,DEP1,APO1,TGW6,GN1A	nal1, cul1, GPS, SPIKE, SPIKE/LSCHL4/NAL1/GPS, SPIKE/NAL1, LSCHL4, OsNAL1,Ghd2, Ghd7, OsGhd7, OsCCT26, OsCMF8, OsI, Ghd7/Hd4, Hd4, EH7-1/Hd4, Ghd7-0a, EH7-1, EH7/Ghd7, EH7, OsEH7, GLW7.1, OsGLW7.1,OsSCP26, SCP26, OsGS5,OsSPL14, SPL14, IPA1, WFP/IPA1, OsSPL14/WFP/IPA1, OsIPA1,  IPA1/OsSPL14,OsDEP1, EP, qPE9-1, DN1, DEP1/DN1/qPE9-1, qNGR9, qDEP1, RGG4/DEP1/DN1/qPE9-1/OsGGC3, RGG4, OsDN1, OsGGC3, GGC3,apo1(t), apo1, SCM2, SCM2/APO1, OsFbox321, Os_F0393, Pbl6/APO1, Pbl6, OsPbl6,  OsFBX202, FBX202,tgw6, OsSTRL7, STRL7, OsSSL4, SSL4,Gn1a, OsCKX2, CKX2, ckx2, Gn1a/OsCKX2, Os CKX2, CKX2/Gn1a
42931	26979310	Mao H., Yu L., Li Z., Liu H., Han R.	Molecular evolution and gene expression differences within the HD-Zip transcription factor family of Zea mays L.	Genetica	144(2)	243-57	2016		
42932	26979747	Ling Y., Weilin Z.	Genetic and biochemical mechanisms of rice resistance to planthopper.	Plant Cell Rep.			2016		
42933	27153728	Zhang Y., Zang Q., Xu B., Zheng W., Ban R., Zhang H., Yang Y., Hao Q., Iqbal F., Li A., Shi Q.	isomiR Bank: a research resource for tracking IsomiRs.	Bioinformatics			2016		
42934	27031246	Park C.H., Shirsekar G., Bellizzi M., Chen S., Songkumarn P., Xie X., Shi X., Ning Y., Zhou B., Suttiviriya P., Wang M., Umemura K., Wang G.L.	The E3 ligase APIP10 Connects the Effector AvrPiz-t to the NLR receptor Piz-t in Rice.	PLoS Pathog.	12(3)	e1005529	2016	KS4,PAL1,APIP10,PIZT	OsKS4, KS4, KSL4, OsKSL4, DTS2, OsDTS2, OsTPS16, TPS16, TPS8, OsTPS8,OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6,OsAPIP10,  OsRING239, RING239,Piz-t, Pi-zt, Pi-z(t), Pi2/Pizt, Pizt, Pi9, OsPiz-t
42935	26951048	Chen M., Tan Q., Sun M., Li D., Fu X., Chen X., Xiao W., Li L., Gao D.	Genome-wide identification of WRKY family genes in peach and analysis of WRKY expression during bud dormancy.	Mol. Genet. Genomics	291(3)	1319-32	2016		
42936	26850149	Kazama T., Itabashi E., Fujii S., Nakamura T., Toriyama K.	Mitochondrial ORF79 levels determine pollen abortion in cytoplasmic male sterile rice.	Plant J.	85(6)	707-16	2016		
42937	27017433	Ma J., Sheng H., Li X., Wang L.	iTRAQ-based proteomic analysis reveals the mechanisms of silicon-mediated cadmium tolerance in rice (Oryza sativa) cells.	Plant Physiol. Biochem.	104	71-80	2016		
42938	26809460	Xu J., Huang X., Lan H., Zhang H., Huang J.	Rearrangement of nitrogen metabolism in rice (Oryza sativa L.) under salt stress.	Plant Signal Behav	11(3)	e1138194	2016		
42939	26926666	Fu C.Y., Liu W.G., Liu D.L., Li J.H., Zhu M.S., Liao Y.L., Liu Z.R., Zeng X.Q., Wang F.	Genome-wide DNA polymorphism in the indica rice varieties RGD-7S and Taifeng B as revealed by whole genome re-sequencing.	Genome	59(3)	197-207	2016		
42940	26969003	Ta K.N., Sabot F., Adam H., Vigouroux Y., De Mita S., Ghesqui?re A., Do N.V., Gantet P., Jouannic S.	miR2118-triggered phased siRNAs are differentially expressed during the panicle development of wild and domesticated African rice species.	Rice (N Y)	9(1)	10	2016	MIR2118F,MEL1,SHO1,_	miR2118f, osa-miR2118f, osa-MIR2118f,mel1, OsMEL1, MEAL1, OsMEAL1, OsAGO5c ,sho1, DCL4, OsDCL4, Os DCL4, Dcl4 ,PH12, PH-12, phasiPH12-1 
42941	26995294	Hu X., Wang C., Fu Y., Liu Q., Jiao X., Wang K.	Expanding the Range of CRISPR/Cas9 Genome Editing in Rice.	Mol Plant			2016		
42942	27029818	Shankar R., Bhattacharjee A., Jain M.	Transcriptome analysis in different rice cultivars provides novel insights into desiccation and salinity stress responses.	Sci Rep	6	23719	2016		
42943	26979330	Kobae Y., Ohmori Y., Saito C., Yano K., Ohtomo R., Fujiwara T.	Phosphate Treatment Strongly Inhibits New Arbuscule Development But Not the Maintenance of Arbuscule in Mycorrhizal Rice Roots.	Plant Physiol.	171(1)	566-79	2016		
42944	27155375	Sharma A., Hussain A., Mun B.G., Imran Q.M., Falak N., Lee S.U., Kim J.Y., Hong J.K., Loake G.J., Ali A., Yun B.W.	Comprehensive analysis of plant Rapid alkalization factor (RALF) genes.	Plant Physiol. Biochem.	106	82-90	2016	RIR1A,RALF7,RALF17,_,RALF1,RALF40,RALF33,RALF41,_,RALF23,RALF32,RALF35,RALF3,RALF15,RALF21,RALF5,RALF38,RALF24,RALF25,RALF43,RALF8,RALF37,RALF12,RALF27,RALF2,RALF39,RALF6,RALF20,RALF19,RALF34,RALF26,RALF36,RALF10,RALF29,RALF16,RALF18,RALF31,RALF9,RALF14,RALF13,RALF4,RALF42,RALF11	Rir1b, Rir1a, OsRALF-28, OsRALF28, RALF-28, RALF28, OsRIR1A, OsRIR1B,OsRALF-7, OsRALF7, RALF-7,OsRALF-17, OsRALF17, RALF-17,bphi008a, BpHi008A, OsRALF-22, OsRALF22, RALF-22, RALF22,OsRALF-1, OsRALF1, RALF-1,OsRALF-40, OsRALF40, RALF-40,OsRALF-33, OsRALF33, RALF-33,OsRALF-41, OsRALF41, RALF-41,RIR1b, Rir1b, OsRALF-30, OsRALF30, RALF-30, RALF30,OsRALF-23, OsRALF23, RALF-23,OsRALF-32, OsRALF32, RALF-32,OsRALF-35, OsRALF35, RALF-35, OsRALF46, RALF46,OsRALF-3, OsRALF3, RALF-3,OsRALF-15, OsRALF15, RALF-15,OsRALF-21, OsRALF21, RALF-21,OsRALF-5, OsRALF5, RALF-5,OsRALF-38, OsRALF38, RALF-38,OsRALF-24, OsRALF24, RALF-24,OsRALF-25, OsRALF25, RALF-25,OsRALF-43, OsRALF43, RALF-43,OsRALF-8, OsRALF8, RALF-8,OsRALF-37, OsRALF37, RALF-37,OsRALF-12, OsRALF12, RALF-12,OsRALF-27, OsRALF27, RALF-27,OsRALF-2, OsRALF2, RALF-2, OsFAR5, FAR5,OsRALF-39, OsRALF39, RALF-39,OsRALF-6, OsRALF6, RALF-6,OsRALF-20, OsRALF20, RALF-20,OsRALF-19, OsRALF19, RALF-19,OsRALF-34, OsRALF34, RALF-34, OsRALF45, RALF45,OsRALF-26, OsRALF26, RALF-26,OsRALF-36, OsRALF36, RALF-36,OsRALF-10, OsRALF10, RALF-10,OsRALF-29, OsRALF29, RALF-29,OsRALF-16, OsRALF16, RALF-16,OsRALF-18, OsRALF18, RALF-18,OsRALF-31, OsRALF31, RALF-31,OsRALF-9, OsRALF9, RALF-9,OsRALF-14, OsRALF14, RALF-14,OsRALF-13, OsRALF13, RALF-13,OsRALF-4, OsRALF4, RALF-4,OsRALF-42, OsRALF42, RALF-42,OsRALF-11, OsRALF11, RALF-11
42945	26991872	Nemoto Y., Nonoue Y., Yano M., Izawa T.	Hd1,a CONSTANS Orthlog in Rice, Functions as an Ehd1 Repressor Through Interaction with Monocot-Specific CCT-Domain Protein Ghd7.	Plant J.			2016	EF1	Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 
42946	26929041	Takahashi I., Fukui K., Asami T.	Chemical modification of phenoxyfuranone-type strigolactone mimic for selective effects on rice tillering or Striga hermonthica seed germination.	Pest Manag. Sci.			2016		
42947	27012284	Yates G., Srivastava A.K., Sadanandom A.	SUMO proteases: uncovering the roles of deSUMOylation in plants.	J. Exp. Bot.	67(9)	2541-8	2016		
42948	27019432	Wu J., Jin X., Zhao Y., Dong Q., Jiang H., Ma Q.	Evolution of the defensin-like gene family in grass genomes.	J. Genet.	95(1)	53-62	2016	DEFL8,DEFL1,DEFL2,DEFL3,CAL1,DEFL4,DEFL5,CAL2,DEFL11,PDF1.2,DEFL10,DEFL9	OsDEFL8, OsDf-08, Df-08, DEF8, OsDEF8,OsDEFL1, OsDf-01, Df-01, DEF1, OsDEF1,OsEnS-25, OsDEFL2, OsDf-02, Df-02, DEFL1, OsDEFL1,OsDEFL3, OsDf-03, Df-03,OsCPT1, CPT1, DEFL7, OsDEFL7, OsDf-07, Df-07, OsPR12, PR12, DEF7, OsDEF7, OsAFP1, AFP1, OsPDF2.2, PDF2.2,OsDEFL4, OsDf-04, Df-04, DEF4, OsDEF4,OsDEFL5, OsDf-05, Df-05,DEFL12, OsDEFL12, OsDf-12, Df-12, OsCAL2, DEF12, OsDEF12,OsDEFL11, OsDf-11, Df-11,OsPDF1.2, DEFL6, OsDEFL6, OsDf-06, Df-06, DEF6, OsDEF6,OsDEFL10, OsDf-10, Df-10, DEF10, OsDEF10,OsDEFL9, OsDf-09, Df-09, DEF9, OsDEF9
42949	26984283	Mahesh H.B., Shirke M.D., Singh S., Rajamani A., Hittalmani S., Wang G.L., Gowda M.	Indica rice genome assembly, annotation and mining of blast disease resistance genes.	BMC Genomics	17(1)	242	2016		
42950	26929151	Yang H., Wei H., Ma G., Antunes M.S., Vogt S., Cox J., Zhang X., Liu X., Bu L., Gleber S.C., Carpita N.C., Makowski L., Himmel M.E., Tucker M.P., McCann M.C., Murphy A.S., Peer W.A.	Cell wall targeted in planta iron accumulation enhances biomass conversion and seed iron concentration in Arabidopsis and rice.	Plant Biotechnol. J.			2016		
42951	27015846	Tanabe K., Hojo Y., Shinya T., Galis I.	Molecular evidence for biochemical diversification of phenolamide biosynthesis in rice plants.	J Integr Plant Biol			2016	JAR1,AHT1,PHT3,_,AHT2	OsJAR1, OsGH3.5, GH3.5, OsGH3-5, GH3-5,Os-AHT1, OsAHT1,Os-PHT3, OsPHT3,OsAT4c, AT4c,OsAHT2
42952	27003905	Dedecker M., Van Leene J., De Winne N., Eeckhout D., Persiau G., Van De Slijke E., Cannoot B., Vercruysse L., Dumoulin L., Wojsznis N., Gevaert K., Vandenabeele S., De Jaeger G.	Transferring an optimized TAP-toolbox for the isolation of protein complexes to a portfolio of rice tissues.	Plant Mol. Biol.			2016	YTH3,_,_,ASN1,_,_,TFIIH-P44,CYCH;1,_,_,_,_,V3,CDKD;1,_,_,_,_,_,SEU,_,_,LS1,APC6,_,TAD1,YTH10,_,_,CDKF;1,_,_	OsYTH03, YTH03, OsYTH3, OsECT3, ECT3,APC10 ,,OsASN1, OsAS1, AS1,,OsLon1, LON1, OsLonP4, LONP4, LON2 ,OsvWA15, vWA15,Os;cycH;1, Orasa;CycH1;1, cycH1, CYCH1 ,MAT1 ,APC4, OsAPC4,APC2, OsAPC2,APC8, OsAPC8,v3, RNRL1, rnrl1, RNR1, RNRL, Osv3, OsRNRL1, OsRNR1, OsRNRL,CDKD;1, Orysa;CDKD;1, R2, OsR2, CAK R2, CDKD1;3 ,APC3, OsAPC3,,APC7, OsAPC7,APC1, OsAPC1,OsEnS-58,OsSEU, OsSEU1, SEU1 ,APC5, OsAPC5,OsXPD, XPD ,OsSRZ1, SRZ1, OsLS1,OsAPC6,APC11, OsAPC11,TAD1, OsCCS52A, TE, OsWD40-61, TAD1/TE, CCS52A1 ,  OsCCS52A1/TE/TAD1, CCS52A1/TE/TAD1, OsCDH1A, CDH1A,OsYTH10, OsECT11, ECT11,DLN40, OsDLN40,CAK1, MAT1, OsCAK1, OsMAT1, CDKA1, OsCDKA1,CDKF;1, Orysa;CDKF;1, CDKF1, CDKF-1/CAK1AT, CDKF-1, CAK1AT, CAK1A,,VLN2, OsVLN2, Os VLN2
42953	26991510	Wu L.B., Ueda Y., Lai S.K., Frei M.	Shoot tolerance mechanisms to iron toxicity in rice (Oryza sativa L.).	Plant Cell Environ.			2016		
42954	26954091	Sun X., Zhang Z., Wu J., Cui X., Feng D., Wang K., Xu M., Zhou L., Han X., Gu X., Lu T.	The Oryza sativa Regulator HDR1 Associates with the Kinase OsK4 to Control Photoperiodic Flowering.	PLoS Genet.	12(3)	e1005927	2016	RFT1,HDR1,SE1,HD3A,OSK4,EF1	FT-L 3, OsFTL3, FTL3, FT-L3, RFT, OsRFT1,,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, OsHd1,  Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,osk4, OsK4, OsATG1c, ATG1C, SnRK1B, snrk1b, SnRK1B/OSK24, OSK24, OsK24, OsSNRK1b, OsSnRK1.4, SnRK1.4, OsSnRK1alphaC, SnRK1alphaC,Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 
42955	27009386	He Q., Jones D.C., Li W., Xie F., Ma J., Sun R., Wang Q., Zhu S., Zhang B.	Genome-Wide Identification of R2R3-MYB Genes and Expression Analyses During Abiotic Stress in Gossypium raimondii.	Sci Rep	6	22980	2016		
42956	26945049	Zhang C., Liu J., Zhao T., Gomez A., Li C., Yu C., Li H., Lin J., Yang Y., Liu B., Lin C.	A Drought-Inducible Transcription Factor Delays Reproductive Timing in Rice.	Plant Physiol.	171(1)	334-43	2016		
42957	26993328	Mishra P., Mishra V., Takabe T., Rai V., Singh N.K.	Elucidation of salt-tolerance metabolic pathways in contrasting rice genotypes and their segregating progenies.	Plant Cell Rep.	35(6)	1273-86	2016		
42958	26959033	Huang Z., Liu X., Jin M., Ding C., Jiang J., Wu L.	Deriving the Characteristic Scale for Effectively Monitoring Heavy Metal Stress in Rice by Assimilation of GF-1 Data with the WOFOST Model.	Sensors (Basel)	16(3)		2016		
42959	27000876	Zheng K., Zhao J., Lin D., Chen J., Xu J., Zhou H., Teng S., Dong Y.	The Rice TCM5 Gene Encoding a Novel Deg protease protein is Essential for Chloroplast Development under High Temperatures.	Rice (N Y)	9(1)	13	2016	_,RBCL,V1,V2,PSBA,TCM5,PSAA,RBCS,V3,RPOB	PolI-like, OsPoLP1, PoLP1, OsRpoLp, RpoLp,rbcL, rbcA, OsrbcL,v1, NUS1,OsV1, OsNUS1,v2, mGmk, GMK, Gmk, pt/mtGK, pt/mt GK, OsV2, OsGMK,PsbA, psbA, OsPsbA, PSBD1, OsPSBD1, psbD1,OsDegp7, DEGP7, OsDeg10, DEPG10, OsDEPG10,PsaA, psaA, PsAA1, psaA1,rbcS, OsRbcS, RBCS-C, RbcS2, OsRBCS2, RbcS1, OsRbcS2, OsrbcS1,v3, RNRL1, rnrl1, RNR1, RNRL, Osv3, OsRNRL1, OsRNR1, OsRNRL,rpoB, RpoB, Rpobeta
42960	26991499	Cao H., Zhuo L., Su Y., Sun L., Wang X.	Non-specific phospholipase C1 affects silicon distribution and mechanical strength in stem nodes of rice.	Plant J.			2016	NPC3,NPC5,LSI6,NPC1,NPC4,NPC2	OsNPC4, OsNPC3, NPC4,OsNPC6, OsNPC5, NPC6,Lsi6, OsNIP2;2, NIP2-2, OsLsi6, OsNIP2.2/OsLsi6, OsNIP2.2, NIP2.2,OsNPC1,OsNPC3, OsNPC4, NPC3,OsNPC2
42961	27180265	Li T., Liu B., Chen C.Y., Yang B.	TALEN-Mediated Homologous Recombination Produces Site-Directed DNA Base Change And Herbicide-Resistant Rice.	J Genet Genomics			2016		
42962	26780420	Wang Y., Wu J., Kim S.G., Tsuda K., Gupta R., Park S.Y., Kim S.T., Kang K.Y.	Magnaporthe oryzae-Secreted Protein MSP1 Induces Cell Death and Elicits Defense Responses in Rice.	Mol. Plant Microbe Interact.	29(4)	299-312	2016		
42963	26801057	Zhang H., He D., Yu J., Li M., Damaris R.N., Gupta R., Kim S.T., Yang P.	Analysis of dynamic protein carbonylation in rice embryo during germination through AP-SWATH.	Proteomics	16(6)	989-1000	2016		
42964	26932667	Ghosh P., Sen S., Chakraborty J., Das S.	Monitoring the efficacy of mutated Allium sativum leaf lectin in transgenic rice against Rhizoctonia solani.	BMC Biotechnol.	16	24	2016		
42965	26959982	Wang D.R., Bunce J.A., Tomecek M.B., Gealy D., McClung A., McCouch S.R., Ziska L.H.	Evidence for divergence of response in INDICA, Japonica, and wild rice to high CO2 x temperature interaction.	Glob Chang Biol			2016		
42966	26919041	Byeon Y., Back K.	Low melatonin production by suppression of either Serotonin N-acetyltransferase or N-acetylserotonin methyltransferase in rice causes seedling growth retardation with yield penalty, abiotic stress susceptibility, and enhanced coleoptile growth under anoxic conditions.	J. Pineal Res.	60(3)	348-59	2016		
42967	27025363	Zhang L., Li Q., Chen J.F., Chen W.S.	Computational identification and systematic classification of novel GRAS genes in Isatis indigotica.	Chinese Journal of Natural Medicines	14(3)	161-76	2016		
42968	26936896	Chen C., Begcy K., Liu K., Folsom J.J., Wang Z., Zhang C., Walia H.	Heat stress yields a unique MADS box transcription factor in determining seed size and thermal sensitivity.	Plant Physiol.	171(1)	606-22	2016		
42969	26961568	Kumari C., Dutta T.K., Banakar P., Rao U.	Comparing the defence-related gene expression changes upon root-knot nematode attack in susceptible versus resistant cultivars of rice.	Sci Rep	6	22846	2016		
42970	26995311	Li M., Ashraf U., Tian H., Mo Z., Pan S., Anjum S.A., Duan M., Tang X.	Manganese-induced regulations in growth, yield formation, quality characters, rice aroma and enzyme involved in 2-acetyl-1-pyrroline biosynthesis in fragrant rice.	Plant Physiol. Biochem.	103	167-75	2016		
42971	27017220	Chakraborty M., Reddy P.S., Mustafa G., Rajesh G., Narasu V.M., Udayasuriyan V., Rana D.	Transgenic rice expressing the Cry2AX1 gene confers resistance to multiple lepidopteran pests.	Transgenic Res.			2016		
42972	27038670	Taniguchi M., Ochiai A., Fukuda S., Sato T., Saitoh E., Kato T., Tanaka T.	AmyI-1-18, a cationic alpha-helical antimicrobial octadecapeptide derived from alpha-amylase in rice, inhibits the translation and folding processes in a protein synthesis system.	J. Biosci. Bioeng.			2016		
42973	26945855	Feng C., Zhang X., Wu T., Yuan B., Ding X., Yao F., Chu Z.	The polygalacturonase-inhibiting protein 4 (OsPGIP4), a potential component of the qBlsr5a locus, confers resistance to bacterial leaf streak in rice.	Planta	243(5)	1297-308	2016		
42974	26810451	Chen D., Li Y., Fang T., Shi X., Chen X.	Specific roles of tocopherols and tocotrienols in seed longevity and germination tolerance to abiotic stress in transgenic rice.	Plant Sci.	244	31-9	2016		
42975	26994840	Jiao Y., Yang Y., Meissle M., Peng Y., Li Y.	Comparison of susceptibility of Chilo suppressalis and Bombyx mori to five Bacillus thuringiensis proteins.	J. Invertebr. Pathol.	136	95-9	2016		
42976	26940571	Wang Z., Wang Y., Yang J., Hu K., An B., Deng X., Li Y.	Reliable Selection and Holistic Stability Evaluation of Reference Genes for Rice Under 22 Different Experimental Conditions.	Appl. Biochem. Biotechnol.			2016	TPI,_,_,_,PRF2,GRP3,LRT2	tpi*, tips, TI, OsTPI1, TPI1, OsTPI1.1, OsTPI1.2 ,GOS2, OseIF1, OsGOS2, SUI1, PtfS ,Edf ,ARF, ARF1, OsARFA1b, ARFA1b,OsPRF2,OsGRP3, RTP, RBP-152 ,CYC2, cyc2*, cyc2, OsCYP2, Cyp2, OsCYP19-2, CYP19-2, OsCYP-2, OsCyp2-P, OsCyp2, OsCYP19-1, LRT2/OsCYP2, lrt2*, lrt2, Ppcti 
42977	26970512	Wang C., Yang Y., Wang H., Ran X., Li B., Zhang J., Zhang H.	Ectopic expression of a cytochrome P450 monooxygenase gene PtCYP714A3 from Populus trichocarpa reduces shoot growth and improves tolerance to salt stress in transgenic rice.	Plant Biotechnol. J.			2016		
42978	26833589	Wei F.J., Kuang L.Y., Oung H.M., Cheng S.Y., Wu H.P., Huang L.T., Tseng Y.T., Chiou W.Y., Hsieh-Feng V., Chung C.H., Yu S.M., Lee L.Y., Gelvin S.B., Hsing Y.I.	Somaclonal variation does not preclude the use of rice transformants for genetic screening.	Plant J.	85(5)	648-59	2016		
42979	26993329	Duan E., Wang Y., Liu L., Zhu J., Zhong M., Zhang H., Li S., Ding B., Zhang X., Guo X., Jiang L., Wan J.	Pyrophosphate: fructose-6-phosphate 1-phosphotransferase (PFP) regulates carbon metabolism during grain filling in rice.	Plant Cell Rep.	35(6)	1321-31	2016	PFPB	OsPFPB, OsPFP-B, PFP-B, PFPbeta
42980	27162494	Abdula S.E., Lee H.J., Kim J., Ni?o MC., Jung Y.J., Cho Y.C., Nou I., Kang K.K., Cho Y.G.	BrUGE1 transgenic rice showed improved growth performance with enhanced drought tolerance.	Breed. Sci.	66(2)	226-33	2016		
42981	27005412	Byeon Y., Back K.	Melatonin production in Escherichia coli by dual expression of serotonin N-acetyltransferase and caffeic acid O-methyltransferase.	Appl. Microbiol. Biotechnol.			2016		
42982	26970777	Li K., Xu C., Huang J., Liu W., Zhang L., Wan W., Tao H., Li L., Lin S., Harrison A., He H.	Prediction and identification of the effectors of heterotrimeric G proteins in rice (Oryza sativa L.).	Brief. Bioinformatics			2016		
42983	26862573	Hou Y., Tong X., Wang Y., Qiu J., Li Z., Zhang W., Huang S., Zhang J.	Data set from a comprehensive phosphoproteomic analysis of rice variety IRBB5 in response to bacterial blight.	Data Brief	6	282-5	2016		
42984	27035683	Xu H.H., Liu S.J., Song S.H., Wang R.X., Wang W.Q., Song S.Q.	Proteomics analysis reveals distinct involvement of embryo and endosperm proteins during seed germination in dormant and non-dormant rice seeds.	Plant Physiol. Biochem.	103	219-42	2016		
42985	27025496	Bai Z., Chen J., Liao Y., Wang M., Liu R., Ge S., Wing R.A., Chen M.	The impact and origin of copy number variations in the Oryza species.	BMC Genomics	17(1)	261	2016		
42986	27093133	Rathinasabapathi P., Purushothaman N., Parani M.	Genome-wide DNA polymorphisms in Kavuni, a traditional rice cultivar with nutritional and therapeutic properties.	Genome	59(5)	363-6	2016		
42987	27000868	Zheng G., Li L., Li W.	Glycerolipidome responses to freezing- and chilling-induced injuries: examples in Arabidopsis and rice.	BMC Plant Biol.	16(1)	70	2016		
42988	26906115	Zhao G., Shi J., Liang W., Zhang D.	ATP binding cassette G transporters and plant male reproduction.	Plant Signal Behav	11(3)	e1136764	2016		
42989	26946285	Yang J., Liu Z., Wan X., Zheng G., Yang J., Zhang H., Guo L., Wang X., Zhou X., Guo Q., Xu R., Zhou G., Peters M., Zhu G., Wei R., Tian L., Han X.	Interaction between sulfur and lead in toxicity, iron plaque formation and lead accumulation in rice plant.	Ecotoxicol. Environ. Saf.	128	206-12	2016		
42990	27162502	Hori K., Suzuki K., Iijima K., Ebana K.	Variation in cooking and eating quality traits in Japanese rice germplasm accessions.	Breed. Sci.	66(2)	309-18	2016		
42991	26973288	Indoliya Y., Tiwari P., Chauhan A.S., Goel R., Shri M., Bag S.K., Chakrabarty D.	Decoding regulatory landscape of somatic embryogenesis reveals differential regulatory networks between japonica and indica rice subspecies.	Sci Rep	6	23050	2016		
42992	27025598	Mishra S., Singh B., Panda K., Singh B.P., Singh N., Misra P., Rai V., Singh N.K.	Association of SNP Haplotypes of HKT Family Genes with salt tolerance in Indian Wild Rice Germplasm.	Rice (N Y)	9(1)	15	2016		
42993	26995314	Fahad S., Hussain S., Saud S., Hassan S., Tanveer M., Ihsan M.Z., Shah A.N., Ullah A., Nasrullah, Khan F., Ullah S., Alharby H., Nasim W., Wu C., Huang J.	A combined application of biochar and phosphorus alleviates heat-induced adversities on physiological, agronomical and quality attributes of rice.	Plant Physiol. Biochem.	103	191-8	2016		
42994	26836501	Xiong Y., Peng X., Cheng Z., Liu W., Wang G.L.	A comprehensive catalog of the lysine-acetylation targets in rice (Oryza sativa) based on proteomic analyses.	J Proteomics	138	20-9	2016		
42995	26900141	Zhang Z., Xu Y., Xie Z., Li X., He Z.H., Peng X.X.	Association-Dissociation of glycolate oxidase with Catalase in Rice: A Potential Switch to Modulate Intracellular H2O2 Levels.	Mol Plant	9(5)	737-48	2016	GLO1,CATB,NOE1,GLO5	GLO1, OsGLO1,CatB, CAT-B, OsCatB, OsCATB, OsCAT1B, CAT1B, CAT2, OsCAT2,CATC, OsCat, OsCatC, OsCATC, OsNOE1, noe1, catC, OsCATC, CAT3, OsCAT3, LLM9428, OsLLM9428,GLO4, OsGLO4, OsGLO5
42996	26879398	Cui Y., Liu Z., Li Y., Zhou F., Chen H., Lin Y.	Application of a novel phosphinothricin N-acetyltransferase (RePAT) gene in developing glufosinate-resistant rice.	Sci Rep	6	21259	2016		
42997	26922174	Liu Z., Zhu C., Jiang Y., Tian Y., Yu J., An H., Tang W., Sun J., Tang J., Chen G., Zhai H., Wang C., Wan J.	Association mapping and genetic dissection of nitrogen use efficiency-related traits in rice (Oryza sativa L.).	Funct. Integr. Genomics	16(3)	323-33	2016		
42998	26869021	Chen L., Han J., Deng X., Tan S., Li L., Li L., Zhou J., Peng H., Yang G., He G., Zhang W.	Expansion and stress responses of AP2/EREBP superfamily in Brachypodium Distachyon.	Sci Rep	6	21623	2016		
42999	26907259	Noh T.H., Song E.S., Kim H.I., Kang M.H., Park Y.J.	Transcriptome-Based Identification of Differently Expressed Genes from Xanthomonas oryzae pv. oryzae Strains Exhibiting Different Virulence in Rice Varieties.	Int J Mol Sci	17(2)		2016		
43000	26892000	Agarrwal R., Padmakumari A.P., Bentur J.S., Nair S.	Metabolic and transcriptomic changes induced in host during hypersensitive response mediated resistance in rice against the Asian rice gall midge.	Rice (N Y)	9(1)	5	2016		
43001	26842983	Siena L.A., Ortiz J.P., Calderini O., Paolocci F., C?ceres ME., Kaushal P., Grisan S., Pessino S.C., Pupilli F.	An apomixis-linked ORC3-like pseudogene is associated with silencing of its functional homolog in apomictic Paspalum simplex.	J. Exp. Bot.	67(6)	1965-78	2016		
43002	26879887	Kim S.I., Song J.T., Jeong J.Y., Seo H.S.	Niclosamide inhibits leaf blight caused by Xanthomonas oryzae in rice.	Sci Rep	6	21209	2016		
43003	26850838	Taniguchi M., Ochiai A., Takahashi K., Nakamichi S.I., Nomoto T., Saitoh E., Kato T., Tanaka T.	Effect of alanine, leucine, and arginine substitution on antimicrobial activity against Candida albicans and action mechanism of a cationic octadecapeptide derived from alpha-amylase of rice.	Biopolymers			2016		
43004	26729506	Iwamoto M., Tagiri A.	MicroRNA-targeted transcription factor gene RDD1 promotes nutrient ion uptake and accumulation in rice.	Plant J.	85(4)	466-77	2016		
43005	26885647	Meena R.K., Shome S., Thakur S.	Prediction of Phenotypic Effects of Variants Observed in LOC_Os04g36720 of FRO1 Gene in Rice (Oryza sativa L.).	Interdiscip Sci			2016		
43006	26883045	Simmonds J., Scott P., Brinton J., Mestre T.C., Bush M., Del Blanco A., Dubcovsky J., Uauy C.	A splice acceptor site mutation in TaGW2-A1 increases thousand grain weight in tetraploid and hexaploid wheat through wider and longer grains.	Theor. Appl. Genet.	129(6)	1099-112	2016		
43007	26878189	Potter K.C., Jia M., Hong Y.J., Tantillo D., Peters R.J.	Product Rearrangement from Altering a Single Residue in the Rice syn-Copalyl Diphosphate Synthase.	Org. Lett.	18(5)	1060-3	2016		
43008	26912801	Yi J., Lee Y.S., Lee D.Y., Cho M.H., Jeon J.S., An G.	OsMPK6 plays a critical role in cell differentiation during early embryogenesis in Oryza sativa.	J. Exp. Bot.	67(8)	2425-37	2016	DSG1,ROC1,OSH1,PNH1,SCR	OsMAPK6, MAPK6, OsMPK6, OsSIPK, SIPK, OsMAPK1, MAPK1, MPK1, OsMPK1, MPK6, OsDSG1,Roc1(t), GL2-1, OsHDZ23, OsHDZIP23, HDZ23, HDZIP23,OSKN1, Oskn1, OsKN1, OSH1/Oskn1, HB75,OsPNH1,OsSCR, OsSCR2, SCR2, OsGRAS-51, OsGRAS51, GRAS-51, GRAS51
43009	26910783	Sawada H., Tsukahara K., Kohno Y., Suzuki K., Nagasawa N., Tamaoki M.	Elevated Ozone Deteriorates Grain Quality of Japonica Rice cv. Koshihikari, Even if it Does Not Cause Yield Reduction.	Rice (N Y)	9(1)	7	2016		
43010	26847792	Ren D., Rao Y., Huang L., Leng Y., Hu J., Lu M., Zhang G., Zhu L., Gao Z., Dong G., Guo L., Qian Q., Zeng D.	Fine Mapping Identifies a New QTL for Brown Rice Rate in Rice (Oryza Sativa L.).	Rice (N Y)	9(1)	4	2016		
43011	26884603	Hwang Y., Lee H., Lee Y.S., Cho H.T.	Cell wall-associated root hair SPECIFIC 10, a proline-rich receptor-like kinase, is a negative modulator of Arabidopsis root hair growth.	J. Exp. Bot.	67(6)	2007-22	2016	_,_	RHS10,OsSTA174, RHS10, OsPERK6, PERK6
43012	26829979	De Vleesschauwer D., Seifi H.S., Filipe O., Haeck A., Huu S.N., Demeestere K., H?fte M.	The DELLA Protein SLR1 Integrates and Amplifies Salicylic Acid- and Jasmonic Acid-Dependent Innate Immunity in Rice.	Plant Physiol.	170(3)	1831-47	2016		
43013	26909982	C?mertpay G., Baloch F.S., Derya M., Andeden E.E., Alsaleh A., S?rek H., ?zkan H.	Population structure of rice varieties used in Turkish rice breeding programs determined using simple-sequence repeat and inter-primer binding site-retrotransposon data.	Genet. Mol. Res.	15(1)		2016		
43014	26860200	Spindel J.E., Begum H., Akdemir D., Collard B., Redo?a E., Jannink J.L., McCouch S.	Genome-wide prediction models that incorporate de novo GWAS are a powerful new tool for tropical rice improvement.	Heredity	116(4)	395-408	2016		
43015	26850278	Dawood T., Yang X., Visser E.J., Te Beek TA., Kensche P.R., Cristescu S.M., Lee S., Flokov? K., Nguyen D., Mariani C., Rieu I.	A Co-Opted Hormonal Cascade Activates Dormant Adventitious Root Primordia upon Flooding in Solanum dulcamara.	Plant Physiol.	170(4)	2351-64	2016		
43016	26848586	Wang D., Qin B., Li X., Tang D., Zhang Y., Cheng Z., Xue Y.	Nucleolar DEAD-box RNA helicase TOGR1 Regulates Thermotolerant Growth as a Pre-rRNA Chaperone in Rice.	PLoS Genet.	12(2)	e1005844	2016	APX2,TOGR1,GOLS1,WSI76	OsAPX2, OsAPx02, APXb, OsAPx2, OSAPX2, APx2, cAPX, OsAPX1, APX1,OsTOGR1, DDX47, OsDDX47, OsRH10, RH10,OsGolS1, GolS1, OsGolS2, GolS2,wsi76, OsLEA24/OsGolS2, OsGolS2/OsLEA24, OsLEA24, OsGolS2, GolS2, LEA24, OsGolS1, GolS1, OsGOLS2, GOLS2
43017	26888633	Liu H., Yang C., Li L.	Shade-induced stem elongation in rice seedlings: Implication of tissue-specific phytohormone regulation.	J Integr Plant Biol			2016		
43018	26831622	Hayashi S., Wakasa Y., Ozawa K., Takaiwa F.	Characterization of IRE1 ribonuclease-mediated mRNA decay in plants using transient expression analyses in rice protoplasts.	New Phytol.	210(4)	1259-68	2016		
43019	26891616	Liang G., Zhang H., Lou D., Yu D.	Selection of highly efficient sgRNAs for CRISPR/Cas9-based plant genome editing.	Sci Rep	6	21451	2016		
43020	26848096	Woods D.P., McKeown M.A., Dong Y., Preston J.C., Amasino R.M.	Evolution of VRN2/Ghd7-Like Genes in Vernalization-Mediated Repression of Grass Flowering.	Plant Physiol.	170(4)	2124-35	2016		
43021	26898554	Pandey V., Ansari M.W., Tula S., Yadav S., Sahoo R.K., Shukla N., Bains G., Badal S., Chandra S., Gaur A.K., Kumar A., Shukla A., Kumar J., Tuteja N.	Dose-dependent response of Trichoderma harzianum in improving drought tolerance in rice genotypes.	Planta	243(5)	1251-64	2016		
43022	26829414	Chen H.W., Shao K.H., Wang S.J.	Light-mediated modulation of helix angle and rate of seminal root tip movement determines root morphology of young rice seedlings.	Plant Signal Behav	11(2)	e1141861	2016		
43023	26907500	Chang Y.L., Li W.Y., Miao H., Yang S.Q., Li R., Wang X., Li W.Q., Chen K.M.	Comprehensive Genomic Analysis and Expression Profiling of the NOX Gene Families under Abiotic Stresses and Hormones in Plants.	Genome Biol Evol	8(3)	791-810	2016		
43024	26927068	Dou M., Cheng S., Zhao B., Xuan Y., Shao M.	The Indeterminate Domain Protein ROC1 Regulates Chilling Tolerance via Activation of DREB1B/CBF1 in Rice.	Int J Mol Sci	17(3)		2016		
43025	26867598	Manikandan R., Balakrishnan N., Sudhakar D., Udayasuriyan V.	Development of leaffolder resistant transgenic rice expressing Cry2AX1 gene driven by green tissue-specific rbcS promoter.	World J. Microbiol. Biotechnol.	32(3)	37	2016		
43026	26883225	Wen C., Zhao Q., Nie J., Liu G., Shen L., Cheng C., Xi L., Ma N., Zhao L.	Physiological controls of chrysanthemum DgD27 gene expression in regulation of shoot branching.	Plant Cell Rep.	35(5)	1053-70	2016		
43027	26893418	Meg?as E., Meg?as M., Ollero F.J., Hungria M.	Draft Genome Sequence of Pantoea ananatis Strain AMG521, a Rice Plant Growth-Promoting Bacterial Endophyte Isolated from the Guadalquivir Marshes in Southern Spain.	Genome Announc	4(1)		2016		
43028	26858364	Wang H., Jiao X., Kong X., Hamera S., Wu Y., Chen X., Fang R., Yan Y.	A Signaling Cascade from miR444 to RDR1 in Rice Antiviral RNA Silencing Pathway.	Plant Physiol.	170(4)	2365-77	2016	RDR1,MIR444A,MADS27,MADS23,MADS57	OsRDR1,OsMIR444a, osa-MIR444a, miR444aosa-miR444a osa-miR444a-3p.1 osa-miR444a-3p.2 osa-miR444a-5p,OsMADS27, MADS-27a, OsSTA66, OsMADS27a,OsMADS23, MADS-23,OsMADS57, MADS-57
43029	26848538	Kroj T., Chanclud E., Michel-Romiti C., Grand X., Morel J.B.	Integration of decoy domains derived from protein targets of pathogen effectors into plant immune receptors is widespread.	New Phytol.	210(2)	618-26	2016		
43030	26909954	Yu Y., Cui Y.C., Ren C., Rocha P.S., Peng M., Xu G.Y., Wang M.L., Xia X.J.	Transgenic rice expressing a cassava (Manihot esculenta Crantz) plasma membrane gene MePMP3-2 exhibits enhanced tolerance to salt and drought stresses.	Genet. Mol. Res.	15(1)		2016		
43031	26860054	Hong M.J., Kim D.Y., Seo Y.W.	Interactions between wheat Tubby-like and SKP1-like proteins.	Genes Genet. Syst.	90(5)	293-304	2016		
43032	26993232	Panda B.B., Badoghar A.K., Sekhar S., Shaw B.P., Mohapatra P.K.	1-MCP treatment enhanced expression of genes controlling endosperm cell division and starch biosynthesis for improvement of grain filling in a dense-panicle rice cultivar.	Plant Sci.	246	11-25	2016		
43033	26935445	Takimoto S., Sugiura A., Minami S., Tasaka T., Nakagawa Y., Miyagawa H.	In silico exploration for agonists/antagonists of brassinolide.	Bioorg. Med. Chem. Lett.	26(7)	1709-14	2016		
43034	26907775	Xingliang M., Yaoguang L.	[CRISPR/Cas9-based genome editing systems and the analysis of targeted genome mutations in plants].	Yi Chuan	38(2)	118-25	2016		
43035	26842979	Mori A., Fukuda T., Vejchasarn P., Nestler J., Pariasca-Tanaka J., Wissuwa M.	The role of root size versus root efficiency in phosphorus acquisition in rice.	J. Exp. Bot.	67(4)	1179-89	2016		
43036	26936532	Chung S.I., Rico C.W., Lee S.C., Kang M.Y.	Instant rice made from white and pigmented giant embryonic rice reduces lipid levels and body weight in high fat diet-fed mice.	Obes Res Clin Pract			2016		
43037	26832990	Yamori W., Makino A., Shikanai T.	A physiological role of cyclic electron transport around photosystem I in sustaining photosynthesis under fluctuating light in rice.	Sci Rep	6	20147	2016	PGR5,CRR6	OsPGR5,OsCRR6
43038	26873698	Zhao D.S., Zhang C.Q., Li Q.F., Yang Q.Q., Gu M.H., Liu Q.Q.	A residue substitution in the plastid ribosomal protein L12/AL1 produces defective plastid ribosome and causes early seedling lethality in rice.	Plant Mol. Biol.	91(1-2)	161-77	2016	AL1	RPL12-2, rpl12-2, CL12, OsRPL12-2, L12/AL1, OsAL1
43039	26833720	Cheng J., Wang L., Zeng P., He Y., Zhou R., Zhang H., Wang Z.	Identification of genes involved in rice seed priming in the early imbibition stage.	Plant Biol (Stuttg)			2016		
43040	26903527	Lin H., Karki S., Coe R.A., Bagha S., Khoshravesh R., Balahadia C.P., Ver Sagun J., Tapia R., Israel W.K., Montecillo F., de Luna A., Danila F.R., Lazaro A., Realubit C.M., Acoba M.G., Sage T.L., von Caemmerer S., Furbank R.T., Cousins A.B., Hibberd J.M., Quick W.P., Covshoff S.	Targeted Knockdown of GDCH in Rice Leads to a Photorespiratory-Deficient Phenotype Useful as a Building Block for C4 Rice.	Plant Cell Physiol.			2016		
43041	26842621	Hu H., Wang W., Zhu Z., Zhu J., Tan D., Zhou Z., Mao C., Chen X.	GIPS: A Software Guide to Sequencing-Based Direct Gene Cloning in Forward Genetics Studies.	Plant Physiol.	170(4)	1929-34	2016		
43042	25639923	Zeng X.F., Li L., Li J.R., Zhao D.G.	Constitutive expression of McCHIT1-PAT enhances resistance to rice blast and herbicide, but does not affect grain yield in transgenic glutinous rice.	Biotechnol. Appl. Biochem.	63(1)	77-85	2016		
43043	26950923	Gao J., Fu H., Zhou X., Chen Z., Luo Y., Cui B., Chen G., Liu J.	Comparative proteomic analysis of seed embryo proteins associated with seed storability in rice (Oryza sativa L) during natural aging.	Plant Physiol. Biochem.	103	31-44	2016		
43044	26864209	Tamiru M., Takagi H., Abe A., Yokota T., Kanzaki H., Okamoto H., Saitoh H., Takahashi H., Fujisaki K., Oikawa K., Uemura A., Natsume S., Jikumaru Y., Matsuura H., Umemura K., Terry M.J., Terauchi R.	A chloroplast-localized protein LESION AND LAMINA BENDING affects defence and growth responses in rice.	New Phytol.	210(4)	1282-1297	2016	TIFY9,YSS2,_,JIOSPR10,OPR5,LLB	OsJAZ11, OsJAZ5, OsTIFY9, JAZ11, JAZ5, JAZ11/TIFY9 ,OsNDPK2, NDPK2, BIP114,OsBDG1, BDG1 ,JIOsPR10, OsPR10, PR10, OsJiPR10, JiPR10, OsPR10c, PR10c,OsOPR5, OsOPR6, OsOPR06-2, OPR4,OsLLB, LCMT, OsMTS1, MTS1, PLS3
43045	26883042	Zheng W., Wang Y., Wang L., Ma Z., Zhao J., Wang P., Zhang L., Liu Z., Lu X.	Genetic mapping and molecular marker development for Pi65(t), a novel broad-spectrum resistance gene to rice blast using next-generation sequencing.	Theor. Appl. Genet.	129(5)	1035-44	2016	PI65	Pi65(t), Pi65,
43046	26842722	Veena M., Melvin P., Prabhu S.A., Shailasree S., Shetty H.S., Kini K.R.	Molecular cloning of a coiled-coil-nucleotide-binding-site-leucine-rich repeat gene from pearl millet and its expression pattern in response to the downy mildew pathogen.	Mol. Biol. Rep.	43(3)	117-28	2016		
43047	26872836	Yokosho K., Yamaji N., Fujii-Kashino M., Ma J.F.	Functional Analysis of a MATE Gene OsFRDL2 Revealed its Involvement in Al-Induced Secretion of Citrate, but a Lower Contribution to Al Tolerance in Rice.	Plant Cell Physiol.			2016		
43048	26977447	Xiong Y., Zhang K., Cheng Z., Wang G.L., Liu W.	Data for global lysine-acetylation analysis in rice (Oryza sativa).	Data Brief	7	411-7	2016		
43049	26922355	Chin H.S., Wu Y.P., Hour A.L., Hong C.Y., Lin Y.R.	Genetic and Evolutionary Analysis of Purple leaf Sheath in Rice.	Rice (N Y)	9(1)	8	2016		
43050	26864250	Liu L., Xu W., Hu X., Liu H., Lin Y.	W-box and G-box elements play important roles in early senescence of rice flag leaf.	Sci Rep	6	20881	2016		
43051	26830331	Shao E., Lin L., Chen C., Chen H., Zhuang H., Wu S., Sha L., Guan X., Huang Z.	Loop replacements with gut-binding peptides in Cry1Ab domain II enhanced toxicity against the brown planthopper, Nilaparvata lugens (St?l).	Sci Rep	6	20106	2016		
43052	26873975	Liu X., Li M., Liu K., Tang D., Sun M., Li Y., Shen Y., Du G., Cheng Z.	Semi-Rolled Leaf2 modulates rice leaf rolling by regulating abaxial side cell differentiation.	J. Exp. Bot.	67(8)	2139-50	2016	RL9,YAB3,YAB5,YAB4,SH1,_,_,_,_,YAB7,SRL2	rl9, SLL1/RL9, SLL1, OsSLL1, OsADD1, ADD1, KANADI1, AH2, OsAH2, CL1, OsCL1,OsYAB3, OsYAB4, TOB3,OsYABBY5, OsYAB3, YAB3, Os YABBY5, TOB1, OsTPB1,OsYAB4, OsYAB7, TOB2, ,YAB2, OsYAB2, OsSh1, Sh1, OsFIL2, OsSH1, Osh1,,,,OsSTA80,OsYAB7,NRL2, OsSRL2, OsNRL2
43053	26907211	Dan Z., Hu J., Zhou W., Yao G., Zhu R., Zhu Y., Huang W.	Metabolic prediction of important agronomic traits in hybrid rice (Oryza sativa L.).	Sci Rep	6	21732	2016		
43054	26851365	Liu Q., Yang J., Zhang S., Zhao J., Feng A., Yang T., Wang X., Mao X., Dong J., Zhu X., Leung H., Leach J.E., Liu B.	OsGF14e positively regulates panicle blast resistance in rice.	Biochem. Biophys. Res. Commun.	471(1)	247-52	2016		
43055	26855133	Moraes de Freitas GP., Basu S., Ramegowda V., Braga E.B., Pereira A.	Comparative analysis of gene expression in response to cold stress in diverse rice genotypes.	Biochem. Biophys. Res. Commun.	471(1)	253-9	2016		
43056	26890603	Pandey V., Ansari M.W., Tula S., Sahoo R.K., Bains G., Kumar J., Tuteja N., Shukla A.	Ocimum sanctum leaf extract induces drought stress tolerance in rice.	Plant Signal Behav		0	2016		
43057	26741538	Dixit G., Singh A.P., Kumar A., Mishra S., Dwivedi S., Kumar S., Trivedi P.K., Pandey V., Tripathi R.D.	Reduced arsenic accumulation in rice (Oryza sativa L.) shoot involves sulfur mediated improved thiol metabolism, antioxidant system and altered arsenic transporters.	Plant Physiol. Biochem.	99	86-96	2016		
43058	26841834	Crowell S., Korniliev P., Falc?o A., Ismail A., Gregorio G., Mezey J., McCouch S.	Genome-wide association and high-resolution phenotyping link Oryza sativa panicle traits to numerous trait-specific QTL clusters.	Nat Commun	7	10527	2016		
43059	26758024	Upadhyaya H.D., Wang Y.H., Sastry D.V., Dwivedi S.L., Prasad P.V., Burrell A.M., Klein R.R., Morris G.P., Klein P.E.	Association mapping of germinability and seedling vigor in sorghum under controlled low-temperature conditions.	Genome	59(2)	137-45	2016		
43060	26910860	Sasou A., Shigemitsu T., Saito Y., Tanaka M., Morita S., Masumura T.	Control of foreign polypeptide localization in specific layers of protein body type I in rice seed.	Plant Cell Rep.	35(6)	1287-95	2016		
43061	26942914	Zeng Y., Ji Z., Wen Z., Liang Y., Yang C.	Combination of Eight Alleles at Four Quantitative Trait Loci Determines Grain Length in Rice.	PLoS ONE	11(3)	e0150832	2016		
43062	27092937	Wang D., Qin Y., Fang J., Yuan S., Peng L., Zhao J., Li X.	A Missense Mutation in the Zinc Finger Domain of OsCESA7 Deleteriously Affects Cellulose Biosynthesis and Plant Growth in Rice.	PLoS ONE	11(4)	e0153993	2016		
43063	26834769	Wu H., Zheng Y., Liu J., Zhang H., Chen H.	Heme Oxygenase-1 Delays Gibberellin-Induced Programmed Cell Death of Rice Aleurone Layers Subjected to Drought Stress by Interacting with Nitric Oxide.	Front Plant Sci	6	1267	2015		
43064	26792122	Matsushima R., Maekawa M., Kusano M., Tomita K., Kondo H., Nishimura H., Crofts N., Fujita N., Sakamoto W.	Amyloplast Membrane Protein SUBSTANDARD STARCH GRAIN6 Controls Starch Grain Size in Rice Endosperm.	Plant Physiol.	170(3)	1445-59	2016	SSG6	OsACS6, ACS6
43065	27186018	Chakraborty M., Sairam Reddy P., Laxmi Narasu M., Krishna G., Rana D.	Agrobacterium-mediated genetic transformation of commercially elite rice restorer line using nptII gene as a plant selection marker.	Physiol Mol Biol Plants	22(1)	51-60	2016		
43066	26810156	Magwa R.A., Zhao H., Xing Y.	Genome-wide association mapping revealed a diverse genetic basis of seed dormancy across subpopulations in rice (Oryza sativa L.).	BMC Genet.	17	28	2016		
43067	26760761	Montesinos L., Bund? M., Izquierdo E., Campo S., Badosa E., Rossignol M., Montesinos E., San Segundo B., Coca M.	Production of Biologically Active Cecropin A Peptide in Rice Seed Oil Bodies.	PLoS ONE	11(1)	e0146919	2016		
43068	26934377	Du Y., He W., Deng C., Chen X., Gou L., Zhu F., Guo W., Zhang J., Wang T.	Flowering-Related RING Protein 1 (FRRP1) Regulates flowering time and Yield Potential by Affecting histone H2B Monoubiquitination in Rice (Oryza Sativa).	PLoS ONE	11(3)	e0150458	2016	HD3A,EF1,RFT1,LK3,GIF1,SE1,HGW,GHD7,GW2,EHD2/RID1,HUB2,GW5,MADS50,HD5	Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,FT-L 3, OsFTL3, FTL3, FT-L3, RFT, OsRFT1,lk3(t), lk3(t)*, SG3, GS3, SG3-GS3, OsGW3, OsGS3, RGG3/GS3/Mi/OsGGC1, RGG3, Mi, OsGGC1, GGC1, OsSYL3, SYL3, TT2, OsTT2,gif1, CIN2, OsCIN2, OsGIF1, WB1, OsWB1, GIF1/OsCIN2,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, OsHd1,  Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,OsHGW,Ghd2, Ghd7, OsGhd7, OsCCT26, OsCMF8, OsI, Ghd7/Hd4, Hd4, EH7-1/Hd4, Ghd7-0a, EH7-1, EH7/Ghd7, EH7, OsEH7, GLW7.1, OsGLW7.1,OsGW2, OsRING429, RING429, GNL44, OsGNL44,Ehd2, RID1, OsID1, ID1, OsId1, OsID, Ehd2/RID1/OsId1, RID1/OsID1/Ehd2,OsHUB2, FRRP1, DLN241, OsDLN241,  OsRING378, RING378,qSW5/GW5, GSE5, OsGSE5, OsGW5, qSW5,OsMADS50, AGL20, SOC1, OsSOC1, RMADS208, OsSOC1/ OsMADS50/DTH3, DTH3, OsDTH3,Hd5(t)*, Hd5, qHD5, HAP3H, OsHAP3H, NF-YB, CBF-A, DTH8 , qHD5(t)*, Ghd8, Ghd8/DTH8, Lhd1, NF-YB11, OsNF-YB11, NFYB11, LH8, DTH8/Ghd8, RH8, DTH8/Ghd8/LHD1, CAR8, DTH8/Ghd8/ OsHAP3H, EF8, OsEF8
43069	26943337	Tang Y., Qin S., Guo Y., Chen Y., Wu P., Chen Y., Li M., Jiang H., Wu G.	Genome-Wide Analysis of the AP2/ERF Gene Family in Physic Nut and Overexpression of the JcERF011 Gene in Rice Increased Its Sensitivity to Salinity Stress.	PLoS ONE	11(3)	e0150879	2016		
43070	26818269	Shamsudin N.A., Swamy B.P., Ratnam W., Sta Cruz MT., Raman A., Kumar A.	Marker assisted pyramiding of drought yield QTLs into a popular Malaysian rice cultivar, MR219.	BMC Genet.	17	30	2016		
43071	27186017	Malviya N., Jaiswal P., Yadav D.	Genome- wide characterization of Nuclear Factor Y (NF-Y) gene family of sorghum [Sorghum bicolor (L.) Moench]: a bioinformatics approach.	Physiol Mol Biol Plants	22(1)	33-49	2016		
43072	26803502	Park K.Y., Kim E.Y., Seo Y.S., Kim W.T.	Constitutive expression of CaPLA1 conferred enhanced growth and grain yield in transgenic rice plants.	Plant Mol. Biol.	90(4-5)	517-32	2016		
43073	26781660	Gao D., Li Y., Kim K.D., Abernathy B., Jackson S.A.	Landscape and evolutionary dynamics of terminal repeat retrotransposons in miniature in plant genomes.	Genome Biol.	17	7	2016		
43074	26834778	Amin U.S., Biswas S., Elias S.M., Razzaque S., Haque T., Malo R., Seraj Z.I.	Enhanced Salt Tolerance Conferred by the Complete 2.3 kb cDNA of the Rice vacuolar Na(+)/H(+) antiporter gene Compared to 1.9 kb Coding Region with 5' UTR in Transgenic Lines of Rice.	Front Plant Sci	7	14	2016		
43075	26747130	Singh V., Singh P.K., Siddiqui A., Singh S., Banday Z.Z., Nandi A.K.	Over-expression of Arabidopsis thaliana SFD1/GLY1, the gene encoding plastid localized glycerol-3-phosphate dehydrogenase, increases plastidic lipid content in transgenic rice plants.	J. Plant Res.	129(2)	285-93	2016		
43076	26803790	Wang J., Fang Z., Cheng W., Yan X., Tsang P.E., Zhao D.	Higher concentrations of nanoscale zero-valent iron (nZVI) in soil induced rice chlorosis due to inhibited active iron transportation.	Environ. Pollut.	210	338-45	2016		
43077	27186024	Ganie S.A., Borgohain M.J., Kritika K., Talukdar A., Pani D.R., Mondal T.K.	Assessment of genetic diversity of Saltol QTL among the rice (Oryza sativa L.) genotypes.	Physiol Mol Biol Plants	22(1)	107-14	2016		
43078	26973685	Richa K., Tiwari I.M., Kumari M., Devanna B.N., Sonah H., Kumari A., Nagar R., Sharma V., Botella J.R., Sharma T.R.	Functional Characterization of Novel Chitinase Genes Present in the Sheath Blight Resistance QTL: qSBR11-1 in Rice Line Tetep.	Front Plant Sci	7	244	2016		
43079	27200064	Liu E., Liu Y., Wu G., Zeng S., Tran Thi TG., Liang L., Liang Y., Dong Z., She D., Wang H., Zaid I.U., Hong D.	Identification of a Candidate Gene for panicle length in Rice (Oryza sativa L.) Via Association and Linkage Analysis.	Front Plant Sci	7	596	2016	LP1	OsREM5.3, REM5.3, OsLP1
43080	27116122	Wang F., Wang C., Liu P., Lei C., Hao W., Gao Y., Liu Y.G., Zhao K.	Enhanced Rice Blast Resistance by CRISPR/Cas9-Targeted Mutagenesis of the ERF Transcription Factor Gene OsERF922.	PLoS ONE	11(4)	e0154027	2016		
43081	26772883	Zhao J., Li M., Gu D., Liu X., Zhang J., Wu K., Zhang X., Teixeira da Silva JA., Duan J.	Involvement of rice histone deacetylase HDA705 in seed germination and in response to ABA and abiotic stresses.	Biochem. Biophys. Res. Commun.	470(2)	439-44	2016	D18,NCED3,HDA705,NCED1,NCED2,GA20OX3,SD1	d18-h  (d18-I, d18h), dwf15, d25, d18, d18-k, d18-AD, d18-dy, OsGA3ox2, ga3ox2, OsGA3OX2, GA3OX2, OsGA3ox-2, GA3ox-2, GA3ox1,OSNCED3, OsNCED-3, OsNCED3, OsNCED3a, NCED3a, OsNCED4, NCED4, OsNECD2, OsNCED2b, NCED2b ,OsHDA705,OSNCED1, OsNCED-1, OsNCED3, OsNced3, NCED3, OsNCED9, NCED9,OSNCED2, OsNCED2, OsNCED5, NCED5,OsGA20ox3, ga20ox3,sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2, OsPHQ1, OsPHq1, PHq1
43082	26819544	Hsu Y.C., Wang C.S., Lin Y.R., Wu Y.P.	Structural Diversity of a Novel LTR Retrotransposon, RTPOSON, in the Genus Oryza.	Evol. Bioinform. Online	12	29-40	2016		
43083	27124767	Yin G., Whelan J., Wu S., Zhou J., Chen B., Chen X., Zhang J., He J., Xin X., Lu X.	Comprehensive Mitochondrial Metabolic Shift during the Critical Node of Seed Ageing in Rice.	PLoS ONE	11(4)	e0148013	2016		
43084	26799713	Fan W., Zong J., Luo Z., Chen M., Zhao X., Zhang D., Qi Y., Yuan Z.	Development of a RAD-seq Based DNA Polymorphism Identification Software, AgroMarker Finder, and Its Application in Rice Marker-Assisted Breeding.	PLoS ONE	11(1)	e0147187	2016		
43085	26955374	Yang L., Ji J., Harris-Shultz KR., Wang H., Wang H., Abd-Allah EF., Luo Y., Hu X.	The Dynamic Changes of the Plasma Membrane Proteins and the Protective Roles of Nitric Oxide in Rice Subjected to Heavy Metal Cadmium Stress.	Front Plant Sci	7	190	2016		
43086	26709785	Zhang L., Shen W., Fang Z., Liu B.	Cry1Ab/c in different stages of growth in transgenic rice Bt-shanyou63.	Front Biosci (Landmark Ed)	21	447-54	2016		
43087	26772971	Delteil A., Gobbato E., Cayrol B., Estevan J., Michel-Romiti C., Dievart A., Kroj T., Morel J.B.	Several wall-associated kinases participate positively and negatively in basal defense against rice blast fungus.	BMC Plant Biol.	16	17	2016	WAK92,WAK14,CEBIP,WAK90,WAK112	OsWAK92, OsDEES1-L4,OsWAK14,CEBiP, Os-LYP1, LYP1, OsCEBiP,OsWAK90,OsWAK112, OsWAK112d 
43088	26781807	Qin X., Huang Q., Xiao H., Zhang Q., Ni C., Xu Y., Liu G., Yang D., Zhu Y., Hu J.	The rice DUF1620-containing and WD40-like repeat protein is required for the assembly of the restoration of fertility complex.	New Phytol.	210(3)	934-45	2016	_,RF1,_,GRP162,_	atp6-orfH79,Rf1 (Rf-1), rf-1, PPR791, PPR8-1, Rf-1, Rf1, Rf-1A, Rf5, Rf1a, RF5, Rf5(t)*(Rf(t)*), RF1A, PPR6, PLS31, OsPLS31,orfH79, ORFH79,OsGRP162,RFC3
43089	26809609	Hein A., Polsakiewicz M., Knoop V.	Frequent chloroplast RNA editing in early-branching flowering plants: pilot studies on angiosperm-wide coexistence of editing sites and their nuclear specificity factors.	BMC Evol. Biol.	16	23	2016		
43090	27066033	Essemine J., Qu M., Mi H., Zhu X.G.	Response of Chloroplast NAD(P)H Dehydrogenase-Mediated Cyclic Electron Flow to a Shortage or Lack in Ferredoxin-Quinone Oxidoreductase-Dependent Pathway in Rice Following Short-Term Heat Stress.	Front Plant Sci	7	383	2016		
43091	26826218	Liu J.M., Park S.J., Huang J., Lee E.J., Xuan Y.H., Je B.I., Kumar V., Priatama R.A., Raj K V., Kim S.H., Min M.K., Cho J.H., Kim T.H., Chandran A.K., Jung K.H., Takatsuto S., Fujioka S., Han C.D.	Loose Plant Architecture1 (LPA1) determines lamina joint bending by suppressing auxin signalling that interacts with C-22-hydroxylated and 6-deoxo brassinosteroids in rice.	J. Exp. Bot.	67(6)	1883-95	2016		
43092	26787525	Hu Y., Guo L., Yang G., Qin P., Fan C., Peng Y., Yan W., He H., Li S.	[Genetic analysis of dense and erect panicle 2 allele DEP2-1388 and its application in hybrid rice breeding].	Yi Chuan	38(1)	72-81	2016		
43093	27116220	Nothstein A.K., Eiche E., Riemann M., Nick P., Winkel L.H., G?ttlicher J., Steininger R., Brendel R., von Brasch M., Konrad G., Neumann T.	Tracking Se Assimilation and Speciation through the Rice Plant - Nutrient Competition, Toxicity and Distribution.	PLoS ONE	11(4)	e0152081	2016		
43094	26733690	Che J., Yamaji N., Shao J.F., Ma J.F., Shen R.F.	Silicon decreases both uptake and root-to-shoot translocation of manganese in rice.	J. Exp. Bot.	67(5)	1535-44	2016		
43095	26766411	Ootsubo Y., Hibino T., Wakazono T., Mukai Y., Che F.S.	IREN, a novel EF-hand motif-containing nuclease, functions in the degradation of nuclear DNA during the hypersensitive response cell death in rice.	Biosci. Biotechnol. Biochem.	80(4)	748-60	2016	IREN	
43096	26839515	Chen X., Deng Z., Yu C., Yan C., Chen J.	Secretome analysis of rice suspension-cultured cells infected by Xanthomonas oryzae pv.oryza (Xoo).	Proteome Sci	14	2	2016		
43097	26779230	Adriani D.E., Lafarge T., Dardou A., Fabro A., Clement-Vidal A., Yahya S., Dingkuhn M., Luquet D.	The qTSN Positive Effect on Panicle and flag leaf Size of Rice is Associated with an Early Down-Regulation of Tillering.	Front Plant Sci	6	1197	2015		
43098	26834756	Mellacheruvu S., Tamirisa S., Vudem D.R., Khareedu V.R.	Pigeonpea Hybrid-Proline-Rich Protein (CcHyPRP) Confers Biotic and Abiotic Stress Tolerance in Transgenic Rice.	Front Plant Sci	6	1167	2015		
43099	26909941	Zhang Y.D., Zhu Z., Zhao Q.Y., Chen T., Yao S., Zhou L.H., Zhao L., Zhao C.F., Wang C.L.	Haplotypes of qGL3 and their roles in grain size.regulation with GS3 alleles in rice.	Genet. Mol. Res.	15(1)		2016		
43100	26841062	Cheng Y., Jiang Y., Wu Y., Valentine T.A., Li H.	Soil Nitrogen Status Modifies Rice Root Response to Nematode-Bacteria Interactions in the Rhizosphere.	PLoS ONE	11(2)	e0148021	2016		
43101	26751680	Du H.X., Xiao W.H., Wang Y., Zhou X., Zhang Y., Liu D., Yuan Y.J.	Engineering Yarrowia lipolytica for Campesterol Overproduction.	PLoS ONE	11(1)	e0146773	2016		
43102	27124300	Han Y., Li P., Gong S., Yang L., Wen L., Hou M.	Defense Responses in Rice Induced by Silicon Amendment against Infestation by the Leaf Folder Cnaphalocrocis medinalis.	PLoS ONE	11(4)	e0153918	2016		
43103	26764380	Mahrez W., Arellano M.S., Moreno-Romero J., Nakamura M., Shu H., Nanni P., K?hler C., Gruissem W., Hennig L.	H3K36ac Is an Evolutionary Conserved Plant Histone Modification That Marks Active Genes.	Plant Physiol.	170(3)	1566-77	2016		
43104	26910246	Mo Z., Huang J., Xiao D., Ashraf U., Duan M., Pan S., Tian H., Xiao L., Zhong K., Tang X.	Supplementation of 2-Ap, Zn and La Improves 2-Acetyl-1-Pyrroline Concentrations in Detached Aromatic Rice Panicles In Vitro.	PLoS ONE	11(2)	e0149523	2016		
43105	26755691	Urano D., Miura K., Wu Q., Iwasaki Y., Jackson D., Jones A.M.	Plant Morphology of Heterotrimeric G Protein Mutants.	Plant Cell Physiol.	57(3)	437-45	2016		
43106	26806528	Trijatmiko K.R., Due?as C., Tsakirpaloglou N., Torrizo L., Arines F.M., Adeva C., Balindong J., Oliva N., Sapasap M.V., Borrero J., Rey J., Francisco P., Nelson A., Nakanishi H., Lombi E., Tako E., Glahn R.P., Stangoulis J., Chadha-Mohanty P., Johnson A.A., Tohme J., Barry G., Slamet-Loedin IH.	Biofortified indica rice attains iron and zinc nutrition dietary targets in the field.	Sci Rep	6	19792	2016		
43107	26802561	Hu H., Wang L., Li Y., Sun J., Zhou Q., Huang X.	Insight into mechanism of lanthanum (III) induced damage to plant photosynthesis.	Ecotoxicol. Environ. Saf.	127	43-50	2016		
43108	26792976	Yang X., Wang J.	Genome-Wide Analysis of NBS-LRR Genes in Sorghum Genome Revealed Several Events Contributing to NBS-LRR Gene Evolution in Grass Species.	Evol. Bioinform. Online	12	9-21	2016		
43109	26904091	Jiang Y., Qiu Y., Hu Y., Yu D.	Heterologous Expression of AtWRKY57 Confers drought tolerance in Oryza sativa.	Front Plant Sci	7	145	2016		
43110	26826216	Talla S.K., Panigrahy M., Kappara S., Nirosha P., Neelamraju S., Ramanan R.	Cytokinin delays dark-induced senescence in rice by maintaining the chlorophyll cycle and photosynthetic complexes.	J. Exp. Bot.	67(6)	1839-51	2016		
43111	27010823	Zhou Y., Dong G., Tao Y., Chen C., Yang B., Wu Y., Yang Z., Liang G., Wang B., Wang Y.	Mapping Quantitative Trait Loci Associated with Toot Traits Using Sequencing-Based Genotyping Chromosome Segment Substitution Lines Derived from 9311 and Nipponbare in Rice (Oryza sativa L.).	PLoS ONE	11(3)	e0151796	2016		
43112	27065353	Wang S., Chang Y., Ellis B.	Overview of OVATE FAMILY PROTEINS, A Novel Class of Plant-Specific Growth Regulators.	Front Plant Sci	7	417	2016		
43113	27092157	Hussain S., Khan F., Cao W., Wu L., Geng M.	Seed Priming Alters the Production and Detoxification of Reactive Oxygen Intermediates in Rice Seedlings Grown under Sub-optimal Temperature and Nutrient Supply.	Front Plant Sci	7	439	2016		
43114	26791837	He H., Zhu S., Jiang Z., Ji Y., Wang F., Zhao R., Bie T.	Comparative mapping of powdery mildew resistance gene Pm21 and functional characterization of resistance-related genes in wheat.	Theor. Appl. Genet.	129(4)	819-29	2016		
43115	26727453	Salem K.F., Sallam A.	Analysis of population structure and genetic diversity of Egyptian and exotic rice (Oryza sativa L.) genotypes.	C. R. Biol.	339(1)	1-9	2016		
43116	27066031	Li M., Li X., Zhou Z., Wu P., Fang M., Pan X., Lin Q., Luo W., Wu G., Li H.	Reassessment of the Four Yield-related Genes Gn1a, DEP1, GS3, and IPA1 in Rice Using a CRISPR/Cas9 System.	Front Plant Sci	7	377	2016		
43117	26786911	Ariyarathna H.A., Oldach K.H., Francki M.G.	A comparative gene analysis with rice identified orthologous group II HKT genes and their association with Na(+) concentration in bread wheat.	BMC Plant Biol.	16	21	2016		
43118	27020034	Xie Q., Liang Y., Zhang J., Zheng H., Dong G., Qian Q., Zuo J.	Involvement of a Putative Bipartite Transit Peptide in Targeting Rice Pheophorbide a Oxygenase into Chloroplasts for Chlorophyll Degradation during leaf senescence.	J Genet Genomics	43(3)	145-54	2016	EAS1 	OsPAO, PAO, OsACD1, ACD1, OsEAS1, RCD2, OsRCD2
43119	26824347	Ba?c? C., Allmer J.	One Step Forward, Two Steps Back; Xeno-MicroRNAs Reported in Breast Milk Are Artifacts.	PLoS ONE	11(1)	e0145065	2016		
43120	26799776	Pucciariello C., Perata P.	New insights into reactive oxygen species and nitric oxide signalling under low oxygen in plants.	Plant Cell Environ.			2016		
43121	26859143	Onogi A., Ideta O., Yoshioka T., Ebana K., Yamasaki M., Iwata H.	Uncovering a Nuisance Influence of a Phenological Trait of Plants Using a Nonlinear Structural Equation: Application to Days to heading and Culm Length in Asian Cultivated Rice (Oryza Sativa L.).	PLoS ONE	11(2)	e0148609	2016		
43122	26807986	Jing L., Dombinov V., Shen S., Wu Y., Yang L., Wang Y., Frei M.	Physiological and genotype-specific factors associated with grain quality changes in rice exposed to high ozone.	Environ. Pollut.	210	397-408	2016		
43123	26747287	Toyosawa Y., Kawagoe Y., Matsushima R., Crofts N., Ogawa M., Fukuda M., Kumamaru T., Okazaki Y., Kusano M., Saito K., Toyooka K., Sato M., Ai Y., Jane J.L., Nakamura Y., Fujita N.	Deficiency of starch synthase IIIa and IVb Alters Starch Granule Morphology from Polyhedral to Spherical in Rice Endosperm.	Plant Physiol.	170(3)	1255-70	2016		
43124	26930200	Baumbach J., Pudake R.N., Johnson C., Kleinhans K., Ollhoff A., Palmer R.G., Bhattacharyya M.K., Sandhu D.	Transposon Tagging of a Male-Sterility, Female-Sterility Gene, st8, Revealed that the Meiotic MER3 DNA helicase Activity Is Essential for Fertility in Soybean.	PLoS ONE	11(3)	e0150482	2016		
43125	26806409	Zhang K., Song Q., Wei Q., Wang C., Zhang L., Xu W., Su Z.	Down-regulation of OsSPX1 caused semi-male sterility, resulting in reduction of grain yield in rice.	Plant Biotechnol. J.			2016		
43126	27092162	Krithika S., Balachandar D.	Expression of Zinc Transporter Genes in Rice as Influenced by Zinc-Solubilizing Enterobacter cloacae Strain ZSB14.	Front Plant Sci	7	446	2016		
43127	26754485	Jin J., Kong J., Qiu J., Zhu H., Peng Y., Jiang H.	High level of microsynteny and purifying selection affect the evolution of WRKY family in Gramineae.	Dev. Genes Evol.	226(1)	15-25	2016		
43128	27023243	Lung S.C., Chye M.L.	Acyl-CoA-Binding Proteins (ACBPs) in Plant Development.	Subcell. Biochem.	86	363-404	2016		
43129	26858735	Jangam A.P., Pathak R.R., Raghuram N.	Microarray Analysis of Rice d1 (RGA1) Mutant Reveals the Potential Role of G-Protein Alpha Subunit in Regulating Multiple Abiotic Stresses Such as Drought, Salinity, Heat, and Cold.	Front Plant Sci	7	11	2016		
43130	26566841	Dievart A., Perin C., Hirsch J., Bettembourg M., Lanau N., Artus F., Bureau C., Noel N., Droc G., Peyramard M., Pereira S., Courtois B., Morel J.B., Guiderdoni E.	The phenome analysis of mutant alleles in Leucine-Rich Repeat Receptor-Like Kinase genes in rice reveals new potential targets for stress tolerant cereals.	Plant Sci.	242	240-9	2016		
43131	26739616	Lu Y.C., Feng S.J., Zhang J.J., Luo F., Zhang S., Yang H.	Genome-wide identification of DNA methylation provides insights into the association of gene expression in rice exposed to pesticide atrazine.	Sci Rep	6	18985	2016		
43132	27045847	Asaf S., Khan A.L., Khan A.R., Waqas M., Kang S.M., Khan M.A., Shahzad R., Seo C.W., Shin J.H., Lee I.J.	Mitochondrial Genome Analysis of Wild Rice (Oryza minuta) and Its Comparison with Other Related Species.	PLoS ONE	11(4)	e0152937	2016		
43133	26801786	Divya D., Singh Y.T., Nair S., Bentur J.S.	Analysis of SSH library of rice variety Aganni reveals candidate gall midge resistance genes.	Funct. Integr. Genomics	16(2)	153-69	2016		
43134	26891550	Mawlong I., Ali K., Tyagi A.	Cloning and characterization of a water deficit stress responsive transcription factor gene from Oryza sativa L.	Indian J. Exp. Biol.	54(1)	26-36	2016		
43135	26566845	Singh R., Singh Y., Xalaxo S., Verulkar S., Yadav N., Singh S., Singh N., Prasad K.S., Kondayya K., Rao P.V., Rani M.G., Anuradha T., Suraynarayana Y., Sharma P.C., Krishnamurthy S.L., Sharma S.K., Dwivedi J.L., Singh A.K., Singh P.K., Nilanjay, Singh N.K., Kumar R., Chetia S.K., Ahmad T., Rai M., Perraju P., Pande A., Singh D.N., Mandal N.P., Reddy J.N., Singh O.N., Katara J.L., Marandi B., Swain P., Sarkar R.K., Singh D.P., Mohapatra T., Padmawathi G., Ram T., Kathiresan R.M., Paramsivam K., Nadarajan S., Thirumeni S., Nagarajan M., Singh A.K., Vikram P., Kumar A., Septiningshih E., Singh U.S., Ismail A.M., Mackill D., Singh N.K.	From QTL to variety-harnessing the benefits of QTLs for drought, flood and salt tolerance in mega rice varieties of India through a multi-institutional network.	Plant Sci.	242	278-87	2016		
43136	26754957	Yi S.Y., Cui Y., Zhao Y., Liu Z.D., Lin Y.J., Zhou F.	A Novel Naturally Occurring Class I 5-Enolpyruvylshikimate-3-Phosphate Synthase from Janibacter sp. Confers High Glyphosate Tolerance to Rice.	Sci Rep	6	19104	2016		
43137	26799169	Lima-Melo Y., Carvalho F.E., Martins M.O., Passaia G., Sousa R.H., Neto M.C., Margis-Pinheiro M., Silveira J.A.	Mitochondrial GPX1 silencing triggers differential photosynthesis impairment in response to salinity in rice plants.	J Integr Plant Biol			2016	GPX1	OsGpx1, GPX1, OsGPx01, OsGPX1
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43156	27186981	Wei F.J., Tsai Y.C., Hsu Y.M., Chen Y.A., Huang C.T., Wu H.P., Huang L.T., Lai M.H., Kuang L.Y., Lo S.F., Yu S.M., Lin Y.R., Hsing Y.I.	Lack of Genotype and Phenotype Correlation in a Rice T-DNA Tagged Line Is Likely Caused by Introgression in the Seed Source.	PLoS ONE	11(5)	e0155768	2016		
43157	26742102	Singh A., Gupta R., Pandey R.	Rice Seed Priming with Picomolar Rutin Enhances Rhizospheric Bacillus subtilis CIM Colonization and Plant Growth.	PLoS ONE	11(1)	e0146013	2016		
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43160	26799317	Yang J., Zhang F., Li J., Chen J.P., Zhang H.M.	Integrative Analysis of the microRNAome and Transcriptome Illuminates the Response of Susceptible Rice Plants to Rice Stripe Virus.	PLoS ONE	11(1)	e0146946	2016		
43161	26793232	Singh A.P., Dixit G., Kumar A., Mishra S., Singh P.K., Dwivedi S., Trivedi P.K., Chakrabarty D., Mallick S., Pandey V., Dhankher O.P., Tripathi R.D.	Nitric Oxide Alleviated Arsenic Toxicity by Modulation of Antioxidants and Thiol Metabolism in Rice (Oryza sativa L.).	Front Plant Sci	6	1272	2015		
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43216	27466405	Bessho-Uehara K., Wang D.R., Furuta T., Minami A., Nagai K., Gamuyao R., Asano K., Angeles-Shim RB., Shimizu Y., Ayano M., Komeda N., Doi K., Miura K., Toda Y., Kinoshita T., Okuda S., Higashiyama T., Nomoto M., Tada Y., Shinohara H., Matsubayashi Y., Greenberg A., Wu J., Yasui H., Yoshimura A., Mori H., McCouch S.R., Ashikari M.	Loss of function at RAE2, a previously unidentified EPFL, is required for awnlessness in cultivated Asian rice.	Proc. Natl. Acad. Sci. U.S.A.	113(32)	8969-74	2016	SUB2,RAE2 ,AN1,RAE3	OsSub2, SLP1, OsSLP1,OsEPFL1, EPFL1, GAD1, OsGAD1, OsRAE2, GLA, OsGLA, GAD1/RAE2, OgRAE2,An-1, OsbHLH093, RAE1, An-1/RAE1, RAE1/An-1, OsRAE1, OsAn-1, OgRAE1,
43217	27452121	Wang J., Peng Y.D., He C., Wei B.Y., Liang Y.S., Yang H.L., Wang Z., Stanley D., Song Q.S.	Cry1Ab-expressing rice did not influence expression of fecundity-related genes in the wolf spider Pardosa pseudoannulata.	Gene			2016		
43218	27465023	Nagano M., Ishikawa T., Fujiwara M., Fukao Y., Kawano Y., Kawai-Yamada M., Shimamoto K.	Plasma Membrane Microdomains Are Essential for Rac1-RbohB/H-Mediated Immunity in Rice.	Plant Cell	28(8)	1966-83	2016	FAH1,FAH2,RAC1,RBOHH,RBOHB	Os-FAH1, OsFAH1,Os-FAH2, OsFAH2,OsRAC1, OsRac1, Os Rac1, Rac1, Os-Rac1,rbohH, OsrbohH, Os rbohH, OsNox9, Nox9, OsRboh9, Rboh9, Os-RbohH, RbohH ,rbohB, OsrbohB, Os rbohB, OsRbohB, OsNox1, Nox1, Os-RbohB, RbohB, OsRboh1, Rboh1
43219	27468891	Tang N., Ma S., Zong W., Yang N., Lv Y., Yan C., Guo Z., Li J., Li X., Xiang Y., Song H., Xiao J., Li X., Xiong L.	MODD mediates deactivation and degradation of OsbZIP46 to negatively regulate ABA signaling and drought resistance in rice.	Plant Cell			2016	RLCK197,BZIP46,WSI18,SAPK9,BZIP72,RAB16B,BZIP23,WD40-66,LEA3-1,MODD,RAB16A,HDAC1	OsPUB70, PUB70, OsRLCK197, UCIP19, OsUCIP19,  OsPUB70, PUB70, OsBSK5, BSK5,ABL1, bZIP46, OsABL1, OsbZIP46, OsAREB8, OsABF2, ABF2, OsABF3, ABF3, OsbZIP46CA1, OsZIP46, ZIP46, OsbZIP46/OsABF2,OsLEA14, OsLEA14a, OsLEA14b, wsi18, pwsi18, OsWsi18, OsLEA14/WSI18,OsSAPK9, OsSnRK2.9, SnRK2.9,OsbZIP72, OsAREB2, OsABF4, ABF4, Osbzip72, OsABI5, ABI5,rab21, OsLEA28, OsRAB16D, OsRab16d, Rab16d, OsRAB16b, XERO1, OsXERO1, OsRD22, RD22,OsbZIP23, OsAREB1, OsABF2, Osbzip23, OsAREB2, OsZIP23, ZIP23,OsWD40-66, TPR3, OsTPR3, TPR1, OsTRP1, OsTPR3, OsTPL2, TPL2, OsTPL, TPL,OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3, OsLEA3A, LEA3A,OsMODD ,Rab16A, rab21, RAB21, OsRab21, OsRAB21, OsRAB-21, OsRab16A, OsLEA29, rab16A, OsRAB16A,OsHDAC1, HDA702, OsHDA702, HDA1, OsHDA1, HDT702, OsHDT702
43220	27535938	Zhang J., Chen L.L., Xing F., Kudrna D.A., Yao W., Copetti D., Mu T., Li W., Song J.M., Xie W., Lee S., Talag J., Shao L., An Y., Zhang C.L., Ouyang Y., Sun S., Jiao W.B., Lv F., Du B., Luo M., Maldonado C.E., Goicoechea J.L., Xiong L., Wu C., Xing Y., Zhou D.X., Yu S., Zhao Y., Wang G., Yu Y., Luo Y., Zhou Z.W., Hurtado B.E., Danowitz A., Wing R.A., Zhang Q.	Extensive sequence divergence between the reference genomes of two elite indica rice varieties Zhenshan 97 and Minghui 63.	Proc. Natl. Acad. Sci. U.S.A.	113(35)	E5163-71	2016		
43221	27500524	Meyer R.S., Choi J.Y., Sanches M., Plessis A., Flowers J.M., Amas J., Dorph K., Barretto A., Gross B., Fuller D.Q., Bimpong I.K., Ndjiondjop M.N., Hazzouri K.M., Gregorio G.B., Purugganan M.D.	Domestication history and geographical adaptation inferred from a SNP map of African rice.	Nat. Genet.	48(9)	1083-8	2016	HAK5,HAK6	OsHAK5, FCO13, OsFCO13,OsHAK6, OsSTA42
43222	27258572	Islam F., Ali B., Wang J., Farooq M.A., Gill R.A., Ali S., Wang D., Zhou W.	Combined herbicide and saline stress differentially modulates hormonal regulation and antioxidant defense system in Oryza sativa cultivars.	Plant Physiol. Biochem.	107	82-95	2016		
43223	27133784	Huang X., Lu Z., Wang X., Ouyang Y., Chen W., Xie K., Wang D., Luo M., Luo J., Yao J.	Imprinted gene OsFIE1 modulates rice seed development by influencing nutrient metabolism and modifying genome H3K27me3.	Plant J.			2016	GLUA1,IEZ1,LTPG10,LTPG2,GLUP4,GLB1,FIE1,CLF,EMF2B,PRO13A.1,PRO13A.2,FIE2,PRO16.2,PRO13B.21	Glua1*, Glua1, GLUA-1, GluA-1, GluA1, Glu19, OsEnS-16,OsiEZ1, OsSET1, SET1, iEZ1, OsEZ1/OsiEZ1, OsEZ1, EZ1, ez1, OsSET15, SDG718, DLN84, OsDLN84,OsLTPG10, OsLTPg10, LTPL83 ,OsLTPG2, OsLTPg2, LTPL82,glup4(esp8), esp8, glup4, OsRab5B2, Rab5a, OsRab5a, GPA1/Rab5a, GPA, GLUP4/Rab5, GLUP4/Rab5a, GPA1, OsGPA1,glb1(t)*, glb1(t), glb1, alpha-Glb, Glb-1, OsGlb1, Glb1, Glb, OsEnS-77,OsFIE1, OsWD40-154, OsEnS-116, OsFIE1/OsWD40-154, WD40-154 ,OsSET24, SDG711, EZ1, OsCLF, OsSDG711,OsEMF2b, EMF2b, GW9, OsGW9, GW9/OsEMF2b ,RP6, Prol-18, OsEnS-93, pro13a.1, OsPRO13A.1, PROLM25,Prol-19, OsEnS-94, RM1, OsRM1, pro13a.2, OsPRO13A.2, PROLM26,OsFIE2, FIE, OsWD40-153,  OsDWD46, DWD46,Prol-17, OsEnS-88, pro16.2, OsPRO16.2, PROLM24,Prol-14, pro13b.21, OsPRO13B.21, PROLM17
43224	27103216	Huang W.K., Ji H.L., Gheysen G., Kyndt T.	Thiamine-induced priming against root-knot nematode infection in rice involves lignification and hydrogen peroxide generation.	Mol. Plant Pathol.	17(4)	614-24	2016	WRKY45,GSL1,PAL1,C4H2,RBOHB,CAD6	OsWRKY45, OsWRKY45-1, OsWRKY45-2, WRKY45-1, WRKY45-2,OsGSL1, CalS10, OsCalS10,OsPAL, Pal1*, Pal1, PAL, Pal_1, PalI, PAL2, OsPAL01, PAL01, OSPAL, CP-1, GP-1, OsPAL1, PAL3, OsPAL3,OsC4H, OsC4HL, C4H, OsC4H2,rbohB, OsrbohB, Os rbohB, OsRbohB, OsNox1, Nox1, Os-RbohB, RbohB, OsRboh1, Rboh1,OsCAD6
43225	27185545	Jiang G., Yin D., Zhao J., Chen H., Guo L., Zhu L., Zhai W.	The rice thylakoid membrane-bound ascorbate peroxidase OsAPX8 functions in tolerance to bacterial blight.	Sci Rep	6	26104	2016	SODA1,2CYSPRXB,XA13,ESL4,APX2,CATA,APX8,NOE1,APX4,APX6	SodA1, OsSODA1, Mn-SOD, Mn- SOD, OsMSD, MnSOD, OsMnSOD, MnSOD1, OsMnSOD1,Os2-Cys PrxB, 2-Cys PrxB,xa13, Xa13, Os8N3, Os-8N3, 8N3, OsSWEET11, SWEET11, OsSWEET11/Xa13, Xa13/Os8N3/SWEET11, Os8N3/Xa13, OsSWEET11/Os8N3, OsSWEET11a, SWEET11a,CDPK12, OsCDPK12, OsCPK12, CPK12, OsESL4,OsAPX2, OsAPx02, APXb, OsAPx2, OSAPX2, APx2, cAPX, OsAPX1, APX1,CATA1, Cat A1*, OSCAT-A, Cat2, CatA1, CAT-A, OsCatA, OsCAT, CAT, catA, OSCATA, OsCATc, OsCATA, OsCAT1A, CAT1, OsCAT1, OsCATC, OsCAT2,OsAPx8, OsAPx08, OSAPX8, APx8, OsAPX8,CATC, OsCat, OsCatC, OsCATC, OsNOE1, noe1, catC, OsCATC, CAT3, OsCAT3, LLM9428, OsLLM9428,OsAPx4, OsAPx04, OSAPX4, APx4, pAPX4,OsAPx6, OsAPx06, OSAPX6, APx6
43226	27297988	Zhang Z., Cheng Z.J., Gan L., Zhang H., Wu F.Q., Lin Q.B., Wang J.L., Wang J., Guo X.P., Zhang X., Zhao Z.C., Lei C.L., Zhu S.S., Wang C.M., Wan J.M.	OsHSD1, a hydroxysteroid dehydrogenase, is involved in cuticle formation and lipid homeostasis in rice.	Plant Sci.	249	35-45	2016	DRP7	drp7, OsHSD1, LGF1, HSD1
43227	27335352	Uji Y., Taniguchi S., Tamaoki D., Shishido H., Akimitsu K., Gomi K.	Overexpression of OsMYC2 Results in the Up-Regulation of Early JA-Rresponsive Genes and Bacterial Blight Resistance in Rice.	Plant Cell Physiol.			2016	BHLH9,TIFY11B,GA2OX1,TIFY10C	OsbHLH009, bHLH009, OsMYC2, MYC2,OsJAZ4, JAZ4, OsJAZ 10, OsJAZ10, JAZ10, OsTIFY11b,OsGA2ox1, ga2ox-1, OsGA2ox-1, ga2ox, ga2ox 1, GA2ox1,OsJAZ7, JAZ7, OsJAZ 8, OsJAZ8, Os-JAZ8, JAZ8, OsTIFY10c, OsTIFY10c/OsJAZ8
43228	26829663	Ghosh T., Rai M., Tyagi W., Challam C.	Seedling stage low temperature response in tolerant and susceptible rice genotypes suggests role of relative water content and members of OsSNAC gene family.	Plant Signal Behav	11(5)	e1138192	2016	NAC3,NAC5,NAC6,ONAC2	OsNAC3, NAC67, ONAC067, OnNAC3*, OsNAC3/ONAC067, DLN180, OsDLN180,OsNAC5, NAC71, ONAC071, ONAC009, ONAC9, ONAC020, ONAC20, OnNAC5*, OnNAC5, OsNAC5/ONAC009,OsNAC6, ONAC048, NAC48, SNAC2, SNAC2/OsNAC6, OsNAC6/ONAC048, OsSNAC2, SNAC-2, OsSNAC-2, OsNAC2,SNAC1, snac1, OsNAC9, ONAC002, ONAC2, ONAC033, ONAC33, ONAC043, ONAC43, ONAC044, ONAC44, OsNAC19, NAC19, SNAC1/ONAC002, OsSNAC1, OsNAC9, OsNAC1
43229	27303902	Harada K., Yamashita E., Inoue K., Yamaguchi K., Fujiwara T., Nakagawa A., Kawasaki T., Kojima C.	Plant-specific DUF1110 protein from Oryza sativa: expression, purification and crystallization.	Acta Crystallogr F Struct Biol Commun	72(Pt 6)	480-4	2016	_,_,_	PBI1, OsPBI1,,
43230	27214086	Das N., Bhattacharya S., Maiti M.K.	Enhanced cadmium accumulation and tolerance in transgenic tobacco overexpressing rice metal tolerance protein gene OsMTP1 is promising for phytoremediation.	Plant Physiol. Biochem.	105	297-309	2016	MTP1	OsMTP1
43231	27238968	Liu S., Wang J., Han Z., Gong X., Zhang H., Chai J.	Molecular Mechanism for Fungal Cell Wall Recognition by rice chitin receptor OsCEBiP.	Structure	24(7)	1192-200	2016	CEBIP	CEBiP, Os-LYP1, LYP1, OsCEBiP
43232	27208249	Tan F., Zhou C., Zhou Q., Zhou S., Yang W., Zhao Y., Li G., Zhou D.X.	Analysis of Chromatin Regulators Reveals Specific Features of Rice DNA Methylation Pathways.	Plant Physiol.	171(3)	2041-54	2016	DDM1B,DRM2,DDM1A	OsDDM1b, DDM1b, DDM1, DLN98, OsDLN98, CHR741, OsCHR741,OsDRM2, osdrm2, DRM2-1,OsDDM1a, DDM1a, DLN225, OsDLN225, CHR746, OsCHR746
43233	27228336	Jeong K., Baten A., Waters D.L., Pantoja O., Julia C.C., Wissuwa M., Heuer S., Kretzschmar T., Rose T.J.	Phosphorus remobilization from rice flag leaves during grain filling: an RNA-seq study.	Plant Biotechnol. J.			2016	SQD2.2,PT22,PT8,SPX1,PAP10A,PLDzeta2,LTN1,SPX2,SPX-MFS1,PAP26,PHF1,PAP1D,PAP3C,PLDzeta1,PT5,RNS4,PHO1;1,PT14,PT19,CAX1A,PAP9B,PT20,SPX-MFS2 ,PT16	OsSQD2, SQD2, OsSQD2.2,OsPT22, OsPHT4;3, PHT4;3,OsPT8, PHT1-8, OsPht1;8, Pht1;8, PHT1;8, OsPHT1;8,OsSPX1,OsPAP10a, PAP10, OsPAP2, PAP2,OsPLDzeta2, OsPLDrho2,LTN1, OsPHO2, PHO2.1, PHO2.2, PHO2, OsUBC35, UBC35,OsSPX2,OsSPX-MFS1,OsPAP26,OsPHF1, OsWD40-137, OsSEC12,OsPAP1d, NPP5, OsNPP5,OsPAP3c,OsPLDzeta1, OsPLDrho1 ,OsPT5, OsPht1;5, Pht1;5, PHT1-5,OsRNS4, OsRRP, RNaseDIS,OsPHO1;1,OsPT14, OsPHT2;1, PHT2;1,OsPT19,OsCAX1a, CAX1a, CAX1, OsCAX1, OsNCX2, OsNCX2.1, OsNCX2.2, NCX2, OsVCAX1a,OsPAP9b,OsSTA235, OsPT20,OsSPX-MFS2,OsPT16
43234	27208278	Yang L., Qian X., Chen M., Fei Q., Meyers B.C., Liang W., Zhang D.	Regulatory Role of a Receptor-Like Kinase in Specifying Anther Cell Identity.	Plant Physiol.	171(3)	2085-100	2016	BZIP74,MSP1,MIL1 ,MIL2,GRX6	OsbZIP74, OsTGA10, TGA10 ,Msp1, OsMSP1, OsTMS15, TMS15,MIL1, mil1,OsTDL1A, TDL1A, OsMIL2, OsTDL1A/MIL2, OsTDL1a ,OsGRX6, OsGrx_I1, Grx_I1
43235	27143046	Kobayashi T., Itai R.N., Senoura T., Oikawa T., Ishimaru Y., Ueda M., Nakanishi H., Nishizawa N.K.	Jasmonate signaling is activated in the very early stages of iron deficiency responses in rice roots.	Plant Mol. Biol.	91(4-5)	533-47	2016	RBBI3-3,YSL2,AOC,AOS1,RBBI3-1,LOX8,ABI3,AOS2,DMAS1,NAS2,_,RMC,HRZ2,SIP2,_,_,NAS1,IRO2,SAMS1,HRZ1,_,TOM1	RBBI3-3, OsBBPI, BBPI, IBP1.2, OsIBP1.2, OsBBTI5, BBTI5,OsYSL2, Os-YSL2, OsYs6 ,OsAOC, AOC1, OsAOC1, HB, CPM2, OsAOC4, AOC4,OsAOS, OsAOS1, CYP74A1, OsAOS2, AOS2,RBBI3-1, OsBBTI4, BBTI4, IBP1.1, RBBTI4, APIP4, OsAPIP4,OsLOX8, OsLOX9, LOX9, OsLOX2;3, LOX2;3, OsLOX2, OsLOX1, CM-LOX8,OsLFL2, LFL2, OsIDEF1, IDEF1, OsABI3,OsAOS2, CYP74A2, OsAOS, OsAOS1,OsDMAS1, OsAKR5, AKR5,OsNAS2, OsNAS1,OsDAD1;4, DAD1;4,OsRMC, OsRLK, OsDUF26, DUF26, OsCBMIP, CBMIP, NCS, OsNCS, OsCRK5, CRK5,OsRFPH2-24, OsHRZ2, OsRING150, RING150, CLG1, OsCLG1,Sip2, OsARD1, ARD1, OsIDI1, IDI1, OsIDI1L/OsARD1,OsDAD1;2, DAD1;2,OsDAD1;3, DAD1;3,OsNAS1,OsIRO2, OsbHLH056, bHLH056, bHLH56, OsbHLH56,OsSAMS1, OS-SAMS1, OsSAMS, SAM, SAMS,OsHRZ1,  OsRING149, RING149,Lox2:Os:1, OsLOX9, LOX9, OsLOX8, LOX8, OsLOX2, LOX2, OsRLL, OsHI-LOX, HI-LOX, RLL2 LOX, RLL2, Lox2osPil, OsLOX2;1, LOX2;1, OsLOX1, OsLOX7, LOX7,OsTOM1, ZIFL4, OsZIFL4 
43236	27302336	Che J., Yamaji N., Shen R.F., Ma J.F.	An Al-inducible expansin gene, OsEXPA10 is involved in root cell elongation of rice.	Plant J.			2016	EXPB1B,EXPA20,EXPA18,EXPA29,ZOS12-02,EXPA10,EXPA25	OsEXPB1, EXPB1b, OsaEXPb1.3, Ory s I, EXPB1.1,OsEXPA20, OsEXP20, osaEXPa1.1,OsEXPA18, OsEXP18, osaEXPa1.3,OsEXPA29,OsART1, STAR3, OsZOS12-02, ART1,OsEXPA10, OsEXP10, osaEXPa1.28,OsEXPA25, OsEXP25, osaEXPa1.6
43237	27350219	Yuan N., Yuan S., Li Z., Li D., Hu Q., Luo H.	Heterologous expression of a rice miR395 gene in Nicotiana tabacum impairs sulfate homeostasis.	Sci Rep	6	28791	2016	SULTR2;1,ATPS,MIR395H,SULTR3;4,SULTR2;2	OsSultr2;1, OsSul2;1, OsaSULTR2, SULTR2,OsATPS, OsaATPS, PAPSS,OsmiR395h, miR395h, osa-MIR395h, OsamiR395h ,OsSultr3;4, OsSul3;4, OsaSULTR3;4, SPDT, OsSPDT,OsSultr2;2, OsSul2;2, OsaSULTR2;1, SULTR2;1, OsSULTR2;1
43238	27258121	Huang L.F., Lin K.H., He S.L., Chen J.L., Jiang J.Z., Chen B.H., Hou Y.S., Chen R.S., Hong C.Y., Ho S.L.	Multiple Patterns of Regulation and Overexpression of a Ribonuclease-Like Pathogenesis-Related Protein Gene, OsPR10a, Conferring disease resistance in Rice and Arabidopsis.	PLoS ONE	11(6)	e0156414	2016	PR10A	PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 
43239	27306456	Hwang S.T., Choi D.	A novel rice protein family of OsHIGDs may be involved in early signalling of hypoxia-promoted stem growth in deepwater rice.	Plant Cell Rep.			2016	_,_,_,_,MSRB1,MDH3.1,_,ADH1,PDC2	ATL3I, OsHIGD1, HIGD1 ,OsHIGD3, HIGD3,OsHIGD4, HIGD4,OsHIGD2, HIGD2,OsMSRB1, OsMSRB1.1, OsMSRB1.2, MSRB1.1,OsMDH3.1, OsLdh4, Ldh4,OsHIGD5, HIGD5,Adh1, Adh1/2, adh1/adh2, OsADH1,pdc2*, pdc2
43240	27265035	Liu F., Zhang L., Luo Y., Xu M., Fan Y., Wang L.	Interactions of Oryza sativa OsCONTINUOUS VASCULAR RING-LIKE 1 (OsCOLE1) and OsCOLE1-INTERACTING PROTEIN reveal a novel intracellular auxin transport mechanism.	New Phytol.	212(1)	96-107	2016	_,_	OsCOLE1, COLE1 ,OsCLIP, CLIP  
43241	27171233	Cho S.H., Paek N.C.	Regulatory role of the OsWOX3A transcription factor in rice root development.	Plant Signal Behav	11(6)	e1184807	2016	PIN1B,PIN1C,NAL2,KAO	PIN1A, OsPIN1A, OsPIN1a, REH1, OsPIN1, OsPIN1b, REH1/OsPIN1,PIN1B, OsPIN1B, OsPIN1b, OsPIN1c,nal2, nal3, cul2, OsWOX3A, WOX3A, Os NS, NS, OsNS, OsWOX3, OsNS1/OsNS2, OsPRS,OsKAO, kao, CYP88A5, OSKAO, Os KAO, RPE1, KO1
43242	27258066	Li C., Zou X., Zhang C., Shao Q., Liu J., Liu B., Li H., Zhao T.	OsLBD3-7 Overexpression Induced Adaxially Rolled Leaves in Rice.	PLoS ONE	11(6)	e0156413	2016	IG1,CRLL1,CRL1,GO,DH1	CRL1L3, CRLL3, OsCrll3, OsIG1, OsLBD1-9, LBD1-9, OsAS2, AS2,OsCrll1, OsLBD3-1, LBD3-1, CRL1L1,crl1, crl1*, ARL1, ARL1/CRL1, OsLBD3-2, LBD3-2, OsCRL1,go, go1, pla3, PLA3, PLA3/GO, OsLBD3-7, LBD3-7,OsDH1, OsLBD2-1, LBD2-1, OsLOB16, LOB16
43243	27300023	Hwang S.H., Kwon S.I., Jang J.Y., Fang I.L., Lee H., Choi C., Park S., Ahn I., Bae S.C., Hwang D.J.	OsWRKY51, a rice transcription factor, functions as a positive regulator in defense response against Xanthomonas oryzae pv. oryzae.	Plant Cell Rep.	35(9)	1975-85	2016	PR10A,_,WRKY51	PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsPR2, PR2, OsGlu1, Glu1,OsWRKY51
43244	27325665	Zong W., Tang N., Yang J., Peng L., Ma S., Xu Y., Li G., Xiong L.	Feedback Regulation of ABA Signaling and Biosynthesis by a bZIP Transcription Factor Targets Drought-Resistance-Related Genes.	Plant Physiol.	171(4)	2810-25	2016	BZIP23,NCED3,SAPK2,PP2C49	OsbZIP23, OsAREB1, OsABF2, Osbzip23, OsAREB2, OsZIP23, ZIP23,OSNCED3, OsNCED-3, OsNCED3, OsNCED3a, NCED3a, OsNCED4, NCED4, OsNECD2, OsNCED2b, NCED2b ,OsSAPK2, OsSnRK2.2, SnRK2.2,OsPP2C49, OsPP76, PP76
43245	27300553	Subburaj S., Cao S., Xia X., He Z.	Phylogenetic Analysis, Lineage-Specific Expansion and Functional Divergence of seed dormancy 4-Like Genes in Plants.	PLoS ONE	11(6)	e0153717	2016	SDR4	Sdr4, OsSdr4, OsSdr4-n, OsSdr4-k, OsSdr4L, Sdr4L 
43246	27379617	Bonifacio A., Carvalho F.E., Martins M.O., Lima Neto MC., Cunha J.R., Ribeiro C.W., Margis-Pinheiro M., Silveira J.A.	Silenced rice in both cytosolic ascorbate peroxidases displays pre-acclimation to cope with oxidative stress induced by 3-aminotriazole-inhibited catalase.	J. Plant Physiol.	201	17-27	2016	APX1,GPX1,GPX3,APX2,APX8,PHGPX,GPX5,APX7	OsAPX1, APXa, OsAPXa, OsAPx01, OsAPx1, OSAPX1, APx1, cAPX, APX2, cAPXa, OscAPXa,OsGpx1, GPX1, OsGPx01, OsGPX1,OsGpx3, GPX3, OsGPx03,OsAPX2, OsAPx02, APXb, OsAPx2, OSAPX2, APx2, cAPX, OsAPX1, APX1,OsAPx8, OsAPx08, OSAPX8, APx8, OsAPX8,OsGpx2, GPX2, OsGPx02, PHGPX, ricPHGPX, riPHGPX ,OsGpx5, GPX5, OsGPx05,OsAPx7, OsAPx07, OSAPX7, APx7, sAPX
43247	27332964	Yang C., Shen W., He Y., Tian Z., Li J.	OVATE Family Protein 8 Positively Mediates Brassinosteroid Signaling through Interacting with the GSK3-like Kinase in Rice.	PLoS Genet.	12(6)	e1006118	2016	BZR1,_,D2,BIN2	OsBZR1, Os BZR1, OsBES1-6, BES1-6,OsOFP30, OsOFP08, OsOFP8, OFP8, OFP30,d2, dwf2, CYP90D2, D2/CYP90D2, OsD2, SMG11, OsSMG11, D2/SMG11, OsD2a, OsD2b,GSK2, Os GSK2, OsGSK2, Os BIN2, OsBIN2, BIN2/GSK2, OsSK22/OsGSK7, OsSK22, OsGSK7, SK22, GSK7, OsSK22/GSK2 
43248	27339321	Hu T., Zhou N., Fu M., Qin J., Huang X.	Characterization of OsLEA1a and its inhibitory effect on the resistance of E. coli to diverse abiotic stresses.	Int. J. Biol. Macromol.	91	1010-7	2016		
43249	27375203	Zhang G., Song X., Guo H., Wu Y., Chen X., Fang R.	A Small G Protein as a Novel Component of the Rice Brassinosteroid Signal Transduction.	Mol Plant			2016	SG2,BZR1,_,D61	OsSERK1, SERK1, OsBAK1, BAK1, OsSERK1/OsBAK1, OsBISERK1, BISERK1, OsSerk1, OsBAK1-1, 08SG2/OsBAK1, 08SG2, OsSG2,OsBZR1, Os BZR1, OsBES1-6, BES1-6,OsRab11F1, OsPRA2, PRA2, OsPra2 ,d61*, dwf42, d61, OsBRI1, OSBRI1, BRI1, Os BRI1, Osbri1, OsBRKq1, BRKq1
43250	27257291	Yang A., Zhang W.H.	A Small GTPase, OsRab6a, is Involved in the Regulation of Iron Homeostasis in Rice.	Plant Cell Physiol.	57(6)	1271-80	2016	NAS1,IRT1,IRO2,_,NAS2	OsNAS1,OsIRT1, ZIP10, OsZIP10, OsZIP12, ZIP12,OsIRO2, OsbHLH056, bHLH056, bHLH56, OsbHLH56,OsRab6B2, Rab6B2, OsRab6a, Rab6a,OsNAS2, OsNAS1
43251	27457997	Zhang F., Zhang P., Zhang Y., Wang S., Qu L., Liu X., Luo J.	Identification of a peroxisomal-targeted aldolase involved in chlorophyll biosynthesis and sugar metabolism in rice.	Plant Sci.	250	205-15	2016	YGDL1	OsAld-Y, Ald-Y, YGDL-1 
43252	27303811	Wang F., Coe R.A., Karki S., Wanchana S., Thakur V., Henry A., Lin H.C., Huang J., Peng S., Quick W.P.	Overexpression of OsSAP16 Regulates Photosynthesis and the Expression of a Broad Range of Stress Response Genes in Rice (Oryza sativa L.).	PLoS ONE	11(6)	e0157244	2016	SAP16	OsSAP16, ZOS7-05, OsZOS7-05
43253	27457985	Mishra R.C., Richa, Grover A.	Constitutive over-expression of rice ClpD1 protein enhances tolerance to salt and desiccation stresses in transgenic Arabidopsis plants.	Plant Sci.	250	69-78	2016	ERD1,CLPD2	CLPD1, ClpD1, OsERD1, OSClpD, osClpD, OsClpD1, OsClpD1.1, OsClpD1.2, OsClpD1.3, OsClpD1.4 ,ClpD2, OsClpD2 
43254	27251327	Cen H., Ye W., Liu Y., Li D., Wang K., Zhang W.	Overexpression of a Chimeric Gene, OsDST-SRDX, Improved salt tolerance of Perennial Ryegrass.	Sci Rep	6	27320	2016	DST	OsDST, DLN102, OsDLN102, HST1, OsHST1
43255	27342307	Tripathi A.K., Pareek A., Singla-Pareek SL.	A NAP-Family Histone Chaperone Functions in Abiotic Stress Response and Adaptation.	Plant Physiol.	171(4)	2854-68	2016	_,DREB1B,DMC1A	OsNAPL6, NAPL6,OsDREB1B, ERF31, OsERF031, OsERF#031, OsERF31, AP2/EREBP#169, AP2/EREBP169, OsDREB1b, OsDREB1C, OsCBF1, CBF1,OsDMC1A, OsDmc1A, Dmc1A, DMC1, OsDMC1, RiLIM15A, OsRad51
43256	27313586	Verma P.K., Verma S., Pande V., Mallick S., Deo Tripathi R., Dhankher O.P., Chakrabarty D.	Overexpression of Rice Glutaredoxin OsGrx_C7 and OsGrx_C2.1 Reduces Intracellular Arsenic Accumulation and Increases Tolerance in Arabidopsis thaliana.	Front Plant Sci	7	740	2016	GRX9,GRX4	OsGRX9, OsGrx_C2.1, Grx_C2.1 ,OsGRX4, OsGrx_C7, Grx_C7
43257	27446153	Kushwaha H.R., Joshi R., Pareek A., Singla-Pareek SL.	MATH-Domain Family Shows Response toward Abiotic Stress in Arabidopsis and Rice.	Front Plant Sci	7	923	2016	_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_	OsMB30, MB30,  OsMBTB52, MBTB52,OsM13, M13, OsM13a, OsUBP5-4, UBP5-4, OsUBP12, UBP12,OsMB37, MB37,  OsMBTB59, MBTB59,OsMB52, MB52,  OsMBTB64, MBTB64,OsM9, M9, OsM9a ,OsMB6, MB6,  OsMBTB7, MBTB7,OsMB46, MB46,OsMB44, MB44, DLN237, OsDLN237,  OsMBTB60, MBTB60,OsMB23, MB23,  OsMBTB48, MBTB48,OsMB42, MB42,  OsMBTB53, MBTB53,OsM12, M12, OsM12a ,OsMB13, MB13,OsMB4, MB4,  OsMBTB1, MBTB1,OsMB5, MB5, OsMB5a, OsMB5b,  OsMBTB3, MBTB3,OsMB24, MB24,  OsMBTB43, MBTB43,OsMB9, MB9,  OsMBTB12, MBTB12,OsMB12, MB12,  OsMBTB27, MBTB27,OsMB7, MB7,OsMB17, MB17,OsMB34, MB34,  OsMBTB56, MBTB56,OsMB21, MB21,OsMB39, MB39,  OsMBTB57, MBTB57,OsMB27, MB27,OsMB28, MB28,  OsMBTB39, MBTB39,OsMB29, MB29,  OsMBTB45, MBTB45,OsMB31, MB31,OsMB22, MB22,  OsMBTB51, MBTB51,OsMB14, MB14,OsMB15, MB15,  OsMBTB24, MBTB24,OsMB16, MB16,  OsMBTB21, MBTB21,OsM6, M6, OsM6a ,OsMB10, MB10, OsMB10a, OsMB10b,  OsMBTB13, MBTB13,OsMB1, MB1 ,OsM10, M10, OsM10a ,OsMB8, MB8,  OsMBTB11, MBTB11,OsMB25, MB25,Os2M1, 2M1,OsMB3, MB3,  OsMBTB2, MBTB2,OsM7, M7, OsM7a ,OsM11, M11, OsM11a ,OsM4, M4, OsM4a ,OsMB36, MB36,OsM8, M8, OsM8a ,OsMB26, MB26,  OsATBPM2, ATBPM2,OsM5, M5, OsM5a, OsUBP5-2, UBP5-2, OsUBP13, UBP13,OsM2, M2, OsM2a, OsUBP5-1, UBP5-1, OsUBP7, UBP7,OsMB48, MB48,OsM1, M1, OsM1a, OsM1b OsM1c,OsMB33, MB33,  OsMBTB36, MBTB36,OsMB51, MB51,OsMB32, MB32,OsMB53, MB53,OsMB50, MB50,OsMB54, MB54,Os2M2B1, 2M2B1 ,  OsMBTB69, MBTB69,OsMB20, MB20, OsMB20a, OsMB20b, DLN234, OsDLN234,  OsMBTB47, MBTB47,OsMB49, MB49, DLN233, OsDLN233,OsMB18, MB18,  OsMBTB15, MBTB15,OsMB40, MB40,  OsMBTB33, MBTB33,OsM3, M3, OsM3a ,OsMB19, MB19,  OsMBTB20, MBTB20,OsMB43, MB43,OsMB45, MB45,  OsMBTB58, MBTB58,OsMB47, MB47,OsMB11, MB11,  OsMBTB14, MBTB14,OsMB41, MB41,  OsMBTB34, MBTB34,  OsMBTB35, MBTB35,OsMB35, MB35,OsMB2, MB2,OsMB38, MB38, DLN236, OsDLN236,  OsMBTB55, MBTB55
43258	27337377	Kitaoka N., Wu Y., Zi J., Peters R.J.	Investigating inducible short-chain alcohol dehydrogenases/reductases clarifies rice oryzalexin biosynthesis.	Plant J.			2016	SDR110C-MS2,SDR110C-MI3 ,_,_,MAS,SDR110C-MS3 	OsSDR110C-MS2, OsMAS1, MAS1, OsMS2, MS2, MAS2,OsSDR110C-MI3,OsSDR110C-MI2, SDR110C-MI2 ,OsSDR110C-MI4, SDR110C-MI4,OsMAS, MAS1, OsMAS1, OsMAS/SDR110C-MS1, SDR110C-MS1, OsSDR110C-MS1, OsMS1, MS1,OsSDR110C-MS3
43259	27451952	Rimlumduan T., Hua Y.L., Tanaka T., Ketudat Cairns JR.	Structure of a plant beta-galactosidase C-terminal domain.	Biochim. Biophys. Acta	1864(10)	1411-8	2016		
43260	27444058	Huang J., Li Z., Zhao D.	Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.	Sci Rep	6	29938	2016	RST1,MIR160B,MIR160A	OsARF10, ARF10, OsARF18, ARF18, OsRST1, GLR1, OsGLR1,miR160b, osa-miR160b, osa-MIR160b, NolmiR-36osa-miR160b-3p osa-miR160b-5p, OsMIR160b,miR160a, osa-miR160a, osa-MIR160aosa-miR160a-3p osa-miR160a-5p, OsMIR160a 
43261	27367609	Zhang B., Wu S., Zhang Y., Xu T., Guo F., Tang H., Li X., Wang P., Qian W., Xue Y.	A High Temperature-Dependent Mitochondrial Lipase EXTRA GLUME1 Promotes Floral Phenotypic Robustness against Temperature Fluctuation in Rice (Oryza sativa L.).	PLoS Genet.	12(7)	e1006152	2016	G1,MFO1,EG1,LHS1	g1 (lng), lng, g1, ELE, Os ELE, OsG1, G1/ELE, LSL2, OsLSL2,OsMADS6, MADS6, OsMFO1,eg1, GY1, OsEG1, OsGY1,OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO, OsLHS1, OsLG3b, LG3b, qLGY3, LGY3, DLN80, OsDLN80, OLR, OsOLR, GW3p6, OsGW3p6, OsMADS1GW3p6, MADS1GW3p6, qLGY3/OsLG3b/GW3p6
43262	27420922	Li J., Li Y., Yin Z., Jiang J., Zhang M., Guo X., Ye Z., Zhao Y., Xiong H., Zhang Z., Shao Y., Jiang C., Zhang H., An G., Paek N.C., Ali J., Li Z.	osasr5 enhances drought tolerance through a stomatal closure pathway associated with ABA and H2 O2 signaling in rice.	Plant Biotechnol. J.			2016	_,_,ASR2,RBLS2,ASR5	OsDjC9,Os2OG-Fe (II) oxy, 2OG-Fe (II) oxy,OsAsr2, OsASR4, ASR4, OsASR6, ASR6,ASR1, OsAsr1, OsASR3, ASR3, Asr3, OsRBLS2,OsASR5, Asr5, Asr1, OsASR1, OsASR2, ASR2
43263	27392090	Kim I.S., Kim Y.S., Kim Y.H., Park A.K., Kim H.W., Lee J.H., Yoon H.S.	Potential Application of the Oryza sativa Monodehydroascorbate reductase Gene (OsMDHAR) to Improve the Stress Tolerance and Fermentative Capacity of Saccharomyces cerevisiae.	PLoS ONE	11(7)	e0158841	2016	MDHAR3	MDHAR, OsMDHAR, OsMDAR3, MDAR3, OsMDHAR3, MDHAR1, OsMDHAR1
43264	27462334	Liu M., Li H., Su Y., Li W., Shi C.	g1/ELE Functions in the Development of Rice Lemmas in Addition to Determining Identities of Empty Glumes.	Front Plant Sci	7	1006	2016	PAP2,DL,G1,LHS1	MADS34, OsMADS34, RMADS212/RMADS217/RMADS221, OsPAP2/MADS34, MADS34/PAP2, PAP2/OsMADS34, OsMADS34/PAP2, OsMADS19,OsDL, dl(lop), lop, dl, dl1, OsDRPq3, DRPq3,g1 (lng), lng, g1, ELE, Os ELE, OsG1, G1/ELE, LSL2, OsLSL2,OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO, OsLHS1, OsLG3b, LG3b, qLGY3, LGY3, DLN80, OsDLN80, OLR, OsOLR, GW3p6, OsGW3p6, OsMADS1GW3p6, MADS1GW3p6, qLGY3/OsLG3b/GW3p6
43265	27457124	Khanday I., Das S., Chongloi G.L., Bansal M., Grossniklaus U., Vijayraghavan U.	Genome-Wide Targets Regulated by the OsMADS1 Transcription Factor Reveals Its DNA Recognition Properties.	Plant Physiol.	172(1)	372-88	2016	CFO1,ERF34,LHS1,HSFB2C,SD6,YAB5	OsMADS32, MADS32, OsCFO1, CFO1/OsMADS32, TRI1, OsTRI1 , OsMADS32/CFO, CFO, OsCFO,OsERF#034, OsERF034, OsERF34, AP2/EREBP#042, AP2/EREBP42,OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO, OsLHS1, OsLG3b, LG3b, qLGY3, LGY3, DLN80, OsDLN80, OLR, OsOLR, GW3p6, OsGW3p6, OsMADS1GW3p6, MADS1GW3p6, qLGY3/OsLG3b/GW3p6,HSfB2c, OsHsfB2c, OsHsf-24, HSF24, OsHSF24 ,OsbHLH108, OsbHLH108/SPT, bHLH108, SPT, OsSPT, OsSD6,OsYABBY5, OsYAB3, YAB3, Os YABBY5, TOB1, OsTPB1
43266	27477684	Fu M., Wang C., Xue F., Higgins J., Chen M., Zhang D., Liang W.	The DNA topoisomerase VI-B Subunit OsMTOPVIB Is Essential for Meiotic Recombination Initiation in Rice.	Mol Plant			2016	TOP6A1,RMC1,ZEP1,DMC1A,SPO11-4,MTOPVIB	OsTOP6A1, OsSPO11-1, OsSPO11A, SPO11-1,MER3, mer3, OsMER3, RCK, OsRCK, Os-MER3,OsZEP1,OsDMC1A, OsDmc1A, Dmc1A, DMC1, OsDMC1, RiLIM15A, OsRad51,OsSPO11-4, OsSPO11D,OsMTOPVIB
43267	27434775	Huda A.K., Haque M.A., Zaman R., Swaraz A.M., Kabir A.H.	Silicon Ameliorates Chromium Toxicity Through Phytochelatin Mediated Vacuolar Sequestration in Roots of Oryza sativa (L.).	Int J Phytoremediation		0	2016		
43268	27194802	Mjomba F.M., Zheng Y., Liu H., Tang W., Hong Z., Wang F., Wu W.	Homeobox Is Pivotal for OsWUS Controlling Tiller Development and Female Fertility in Rice.	G3 (Bethesda)	6(7)	2013-21	2016	TAB1	Os WUS, WUS, OsWOX1, WOX1, OsWUS, OsTAB, TAB1/WUS, MOC3, MOC3/OsWUS, SRT1, MOC3/TAB1/SRT1, DC1, OsDC1, DAP1, OsDAP1
43269	27447607	Lee A., Lee S.S., Jung W.Y., Park H.J., Lim B.R., Kim H.S., Ahn J.C., Cho H.S.	The OsCYP19-4 Gene Is Expressed as Multiple Alternatively Spliced Transcripts Encoding Isoforms with Distinct Cellular Localizations and PPIase Activities under Cold Stress.	Int J Mol Sci	17(7)		2016	CYP19-4	OsCYP19-4, OsCYP-16, OsCYP19-3, OsCYP19-4.1, OsCYP19-4.2, OsCYP19-4.3, OsCYP19-4.4, OsCYP19-4.5, OsCYP19-4.6, OsCYP19-4.7, OsCYP19-4.8
43270	27473592	Man L., Xiang D., Wang L., Zhang W., Wang X., Qi G.	Stress-responsive gene RsICE1 from Raphanus sativus increases cold tolerance in rice.	Protoplasma			2016	TPP1,ICE2,DREB1A,BHLH2	OsTPP1, OsTPS, TPP,OsbHLH001, bHLH001, OsbHLH1, bHLH1, OsICE2,OsDREB1A, Os DREB1A, CBF3, OsCBF3, OsDREB1A/OsCBF3, ERF24, OsERF24, OsERF024, OsERF#024, AP2/EREBP#114, AP2/EREBP114, OsDREBL,OsbHLH002, bHLH002, OsbHLH2, bHLH2, OsICE1, ICE1, OsbHLH002/OsICE1
43271	27462345	Verma P.K., Verma S., Pande V., Mallick S., Deo Tripathi R., Dhankher O.P., Chakrabarty D.	Corrigendum: Overexpression of Rice Glutaredoxin OsGrx_C7 and OsGrx_C2.1 Reduces Intracellular Arsenic Accumulation and Increases Tolerance in Arabidopsis thaliana.	Front Plant Sci	7	1048	2016	GRX9	OsGRX9, OsGrx_C2.1, Grx_C2.1 
43272	27380315	Sakuraba Y., Han S.H., Yang H.J., Piao W., Paek N.C.	Mutation of Rice EARLY FLOWERING3.1 (OsELF3.1) delays leaf senescence in rice.	Plant Mol. Biol.	92(1-2)	223-34	2016	COI1B,NAC58,HD3B,ELF3.2,WRKY42,EIL1,BZIP72,NAC106	OsCOI1b, COI1b, OsCOI1H, COI1H, OsFbox260, Fbox260, Os_F0646,  OsFBL23, FBL23, OsCOl-1, COl-1,OsNAP, NAP, ONAC058, ONAC58, Os PS1, PS1, OsCTb1, CTb1,Hd17, EF7, Ef7, OsELF3-1, ELF3-1, OsELF3, ELF3, ELF3_chr.6, OsELF3.1, ELF3.1, OsELF3a, ELF3a,ELF3_chr.1, OsELF3.2, ELF3.2, OsELF3-2, ELF3-2, OsELF3b, ELF3b,OsWRKY42, WRKY-42,OsEIL1, EIN3, OsEIN3, MHZ6, OsEIL1a, EIL1a, OsEIL1b, EIL1b,OsbZIP72, OsAREB2, OsABF4, ABF4, Osbzip72, OsABI5, ABI5,ONAC106
43273	27467198	Louren?o TF., Serra T.S., Cordeiro A.M., Swanson S.J., Gilroy S., Saibo N., Oliveira M.M.	Rice root curling, a response to mechanosensing, is modulated by the rice E3-ubiquitin ligase HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENE1 (OsHOS1).	Plant Signal Behav		0	2016	EREBP1,BHLH2,ERF99,RMC,_	OsEREBP1, OsERF#070, OsERF070, OsERF70, ERF70, AP2/EREBP#084, AP2/EREBP84,OsbHLH002, bHLH002, OsbHLH2, bHLH2, OsICE1, ICE1, OsbHLH002/OsICE1,OsERF#099, OsERF099, OsERF99, AP2/EREBP#080, AP2/EREBP80, OsEREBP2, EREBP2,OsRMC, OsRLK, OsDUF26, DUF26, OsCBMIP, CBMIP, NCS, OsNCS, OsCRK5, CRK5,OsHOS1, HOS1
43274	27477683	Fang C., Zhang H., Wan J., Wu Y., Li K., Jin C., Chen W., Wang S., Wang W., Zhang H., Zhang P., Zhang F., Qu L., Liu X., Zhou D.X., Luo J.	Control of leaf senescence by a MeOH-Jasmonates Cascade That Is Epigenetically Regulated by OsSRT1 in Rice.	Mol Plant			2016	ACX1,ACX2,SRT701,ACX3,AOC,WRKY30,ICL,TSD2 ,ERF3,JMT2,ACX4,PMEI1,PME6,NOL,OPR1,PME11,JMT1	OsACX1 ,OsACX2,osSRT701, OsSIRT701, OsSRT1, SRT1, OS-SIR2,OsACX3, OsACOX3, ACOX3,OsAOC, AOC1, OsAOC1, HB, CPM2, OsAOC4, AOC4,OsWRKY30,OsEnS-107, EnS-107, OsI85, I85, OsICL, Osl85, l43, Osl43, OsL85,OsTSD2, OsQUA2, QUA2 ,AP37, OsAP37, OsERF3, OsERF#075, OsERF075, OsERF75, ERF75, AP2/EREBP#004, AP2/EREBP4, OsBIERF2, BIERF2, DLN23, OsDLN23,JMT-2, OsJMT-2, OsJMT2,OsACX4, OsACOX1, ACOX1,PMEI-1, OsPMEI1,OsPME6, OsPME1,nol, NOL1, OsNOL, OsNOL1,OsOPR1, OsOPR2, OsOPR11, OsOPR06-6, OPDAR1, OsOPR, OPDAR,PME11, OsPME11,JMT-1, OsJMT-1, OsJMT1
43275	27424498	Gui J., Zheng S., Liu C., Shen J., Li J., Li L.	OsREM4.1 Interacts with OsSERK1 to Coordinate the Interlinking between Abscisic Acid and Brassinosteroid Signaling in Rice.	Dev. Cell	38(2)	201-13	2016	D61,BZIP23,SG2,REM4.1	d61*, dwf42, d61, OsBRI1, OSBRI1, BRI1, Os BRI1, Osbri1, OsBRKq1, BRKq1,OsbZIP23, OsAREB1, OsABF2, Osbzip23, OsAREB2, OsZIP23, ZIP23,OsSERK1, SERK1, OsBAK1, BAK1, OsSERK1/OsBAK1, OsBISERK1, BISERK1, OsSerk1, OsBAK1-1, 08SG2/OsBAK1, 08SG2, OsSG2,OsREM4.1
43276	27462908	Ishii K., Kazama Y., Morita R., Hirano T., Ikeda T., Usuda S., Hayashi Y., Ohbu S., Motoyama R., Nagamura Y., Abe T.	Linear Energy Transfer-Dependent Change in Rice Gene Expression Profile after Heavy-Ion Beam Irradiation.	PLoS ONE	11(7)	e0160061	2016	UEV1C,NBS1,S13,_,_,TA1,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,OGG,TOP2,_,MTE,PARP3,PCNA,MPG,PARP1,MFS1,RFC2,CHR742,RECA3,_,_,_,CHR713,_,_,NTP10,_,RFC5,TOP1,_,_,_,_,RFC1,RFC4,PARP2A	MMS2, OsUEV1C,OsNBS1, OsNbs1,CSB, OsCHR745, CHR745, OlCHR,XPC,Rad23,SSB, OsmtSSB1, mtSSB1, MTSSB1, OsTA1,XPF (Rad1), XPF, Rad1,ERCC1 (Rad10), ERCC1, Rad10,,RecA,TagI,,,,,,Rev1,BARD1,,RecA,XRCC4,RecG,,EME1,SSB,MutM,PARP2B,AlkA,TagI,XAB2,Ogg, OsOGG,OsTOP2,OsRAD1, RAD1 ,TagI, OsMTE, OsMTF, MTF,OsEnS-38, OsPARP3,OsPCNA,TagI, OsMPG,OsPARP1, PARP, OsPARP1.1, OsPARP1.2,MND1, OsMND1, OsMFS1,OsRFC2,OsCHR742, OsCLSY4, CLSY4, OsFEM2, FEM2,RecA, OsRECA3,TOP3, TOP3alpha,TOP3,Ung,CSB, OsCHR713,MMS19,Rad23,OsNTP10,TagI,OsRFC5,OsTOP1,,XPV,,,OsRFC1,OsRFC4,OsPARP2A, OsPARP2, PARP2
43277	27411391	Lu L., Qiu W., Gao W., Tyerman S.D., Shou H., Wang C.	OsPAP10c, a novel secreted acid phosphatase in rice, plays an important role in the utilization of external organic phosphorus.	Plant Cell Environ.			2016	PAP10A,PAP10B,PAP10C,PAP10D	OsPAP10a, PAP10, OsPAP2, PAP2,OsPAP10b,OsPAP10c,OsPAP10d
43278	27405463	Sheng P., Wu F., Tan J., Zhang H., Ma W., Chen L., Wang J., Wang J., Zhu S., Guo X., Wang J., Zhang X., Cheng Z., Bao Y., Wu C., Liu X., Wan J.	A CONSTANS-like transcriptional activator, OsCOL13, functions as a negative regulator of flowering downstream of OsphyB and upstream of Ehd1 in rice.	Plant Mol. Biol.	92(1-2)	209-22	2016	PHYB,BBX23,HD3A,EF1,COL4,RFT1	phyB, PHYB1, OsPHYB, OsphyB, OsYHB, YHB, OsPHYB/OsYHB,OsBBX23, OsCCT27, CCT27, OsR, OsCOL13, COL13,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,OsCOL4, OsD, OsBBX5, OsCOL4/OsD, OsCCT06, BBX5, CCT06,FT-L 3, OsFTL3, FTL3, FT-L3, RFT, OsRFT1
43279	27486471	Kothari K.S., Dansana P.K., Giri J., Tyagi A.K.	Rice Stress Associated Protein 1 (OsSAP1) Interacts with Aminotransferase (OsAMTR1) and Pathogenesis-Related 1a Protein (OsSCP) and Regulates Abiotic Stress Responses.	Front Plant Sci	7	1057	2016	PR1A,SAP1,AMTR1	OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1, OsPR1b, PR1alpha, OsPR1alpha,Osi-SAP1, ISAP1, OsiSAP1, OSISAP1, OsSAP1,Osh36, OsH36, H36, OsAMTR1
43280	27382137	Lee D.K., Jung H., Jang G., Jeong J.S., Kim Y.S., Ha S.H., Do Choi Y., Kim J.K.	Overexpression of the OsERF71 Transcription Factor Alters Rice Root Structure and Drought Resistance.	Plant Physiol.	172(1)	575-88	2016	PRX22,_,CCR10,C4H1,ERF71,_,_,FC1,CCR1,_	prx22, OsPRX22, OsPOD,OsC4H, C4H ,OsCCR10, CCR10,OsC4H1, OsC4H, C4H,OsERF#071, OsERF071, OsERF71, AP2/EREBP#124, AP2/EREBP124, OsERF15,prx15,prx83,OsCAD7, fc1, CAD7,OsCCR1,OsPAL07, OsPAL, PAL07, OsPAL6, PAL6, PAL1, OsPAL7, PAL7
43281	27412910	Feng S.J., Liu X.S., Tao H., Tan S.K., Chu S.S., Oono Y., Zhang X.D., Chen J., Yang Z.M.	Variation of DNA methylation patterns associated with gene expression in rice (Oryza sativa) exposed to cadmium.	Plant Cell Environ.			2016	DRM2,IRO2,PR1B	OsDRM2, osdrm2, DRM2-1,OsIRO2, OsbHLH056, bHLH056, bHLH56, OsbHLH56,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1, OsPR1a, PR1a
43282	27378815	Li X., Yang D.L., Sun L., Li Q., Mao B., He Z.	The Systemic Acquired Resistance Regulator OsNPR1 Attenuates Growth by Repressing Auxin Signaling through Promoting IAA-Amido Synthase Expression.	Plant Physiol.	172(1)	546-58	2016	CIGR1,CIGR2,SAUR2,_,_,_,IAA24,YUCCA7,RR1,RR9,_,NH1,RR2,_,IAA14,BIN1,GH3-8,SAUR39,GW6,UGT3,_	OsCIGR1, OsGRAS-34, OsGRAS34, GRAS-34, GRAS34,OsCIGR2, OsGRAS-36, OsGRAS36, GRAS-36, GRAS36,OsSAUR2,,GID1, GID1L2,OsCDAP1, GID1L2,OsIAA24,OsYUCCA7, OsYUC7, OsYUC5, YUC5, YUC7,rr1, OsRR1, Rra9, OsRRA9,OsRR9, Rra1, OsRRA1, OsRR10, RR10,OsSERK3, OsSERL6, OsBI-SERK1, BI-SERK1, OsBAK1-3,OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2, DLN5, OsDLN5,  OsBTBA1, BTBA1,rr2, Osrr2, OsRR2, Rra10, OsRRA10,ARGOS,OsIAA14, AUX/IAA14, OsAUX/IAA14 ,OsBIN1,OsGH3-8, OsMGH3, OsGH3.8, GH3.8, OsGH3-2,OsSAUR39,OsGSR1, GSR1, OsGASR7, GASR7, OsGW6, OsGASR7/GW6,qRA2, OsUGT3,SEPK1
43283	27456761	Xue Z., Li Y., Zhang L., Shi W., Zhang C., Feng M., Zhang F., Tang D., Yu H., Gu M., Cheng Z.	OsMTOPVIB promotes meiotic DNA double-strand break formation in rice.	Mol Plant			2016	MTOPVIB,DMC1A,_,TOP6A1	OsMTOPVIB,OsDMC1A, OsDmc1A, Dmc1A, DMC1, OsDMC1, RiLIM15A, OsRad51,gammaH2AX ,OsTOP6A1, OsSPO11-1, OsSPO11A, SPO11-1
43284	27531886	Wang Y., Zhang J., Shi X., Peng Y., Li P., Lin D., Dong Y., Teng S.	Temperature-sensitive albino gene tcd5, encoding a monooxygenase, affects chloroplast development at low temperatures.	J. Exp. Bot.			2016	TCD5,PSAA,PSBA,HEMA,RPOTP,V3,RBCL,RPOA	OsTCD5, TSV, OsTSV, CSV1, OsCSV1,PsaA, psaA, PsAA1, psaA1,PsbA, psbA, OsPsbA, PSBD1, OsPSBD1, psbD1,HEMA1, OsHEMA, GluTR, OsHEMA1, hemA,OsRpo Tp, OsRpoTp, NEP, RpoTp, rpoTP2,v3, RNRL1, rnrl1, RNR1, RNRL, Osv3, OsRNRL1, OsRNR1, OsRNRL,rbcL, rbcA, OsrbcL,rope, rpoalpha, Rpoalpha, rope, RpoA 
43285	27524243	Yu J., Lai Y., Wu X., Wu G., Guo C.	Overexpression of OsEm1 encoding a group I LEA protein confers enhanced drought tolerance in rice.	Biochem. Biophys. Res. Commun.	478(2)	703-9	2016	LEA3-1,EM,RAB16C,RAB16A	OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3, OsLEA3A, LEA3A,Em*, EMP1, Emp1, EM, Em, OsEm, Osem, OsLEA21, OsEm1, Em1 ,rab21, OsLEA27, rab16C, OsRAB16C, DHD,Rab16A, rab21, RAB21, OsRab21, OsRAB21, OsRAB-21, OsRab16A, OsLEA29, rab16A, OsRAB16A
43286	27532299	Wang F., Liu J., Chen M., Zhou L., Li Z., Zhao Q., Pan G., Zaidi S.H., Cheng F.	Involvement of Abscisic Acid in PSII Photodamage and D1 Protein Turnover for Light-Induced Premature Senescence of Rice Flag Leaves.	PLoS ONE	11(8)	e0161203	2016	FTSH1,FTSH2,PSBB,_,FTSH8,FTSH7,FTSH3,PSBA,FTSH4,FTSH5,PSBC	OsFtsH1, FtsH1,OsFtsH2, FtsH2,psbB, OsPSBB,PSF,OsFtsH8, FtsH8,OsFtsH7, FtsH7,OsFtsH3, FtsH3,PsbA, psbA, OsPsbA, PSBD1, OsPSBD1, psbD1,OsFtsH4, FtsH4,OsFtsH5, FtsH5,psbC, cp43, OsPSBC, OsCP43
43287	27565208	Liu H., Li Q., Yang F., Zhu F., Sun Y., Tao Y., Lo C.	Differential Regulation of protochlorophyllide oxidoreductase Abundances by VIRESCENT 5A (OsV5A) and VIRESCENT 5B (OsV5B) in Rice Seedlings.	Plant Cell Physiol.			2016	FGL,PORA,V5B,YLC1	fgl(fl), fl, fgl, OsFGL, OsPorB, PoPA, PORA, porA, OsPORA, PORB, OsPORB,OsPorA, OsPORA,OsV5B,OsV5A, V5A
43288	27574184	Li X., Xia K., Liang Z., Chen K., Gao C., Zhang M.	MicroRNA393 is involved in nitrogen-promoted rice tillering through regulation of auxin signal transduction in axillary buds.	Sci Rep	6	32158	2016	MIR393,TIR1,FBOX206,IAA6	OsmiR393, osa-MIR393, osa-MIR393a, OsmiR393a, miR393a ,OsTIR1, OsFbox248, Fbox248, Os_F071, AFB,  OsFBL21, FBL21,OsAFB2, ABF2, OsAFB2-1, OsAFB2-2, OsFbox206, Os_F0492, OsTIR1, TIR1,  OsFBL16, FBL16,OsIAA6
43289	27545590	Wang J., Wu F., Zhu S., Xu Y., Cheng Z., Wang J., Li C., Sheng P., Zhang H., Cai M., Guo X., Zhang X., Wang C., Wan J.	Overexpression of OsMYB1R1-VP64 fusion protein increases grain yield in rice by delaying flowering time.	FEBS Lett.			2016	MYB1R1 ,RFT1,HD3A,EF1	OsMYB1R1, 1R-MYB1,FT-L 3, OsFTL3, FTL3, FT-L3, RFT, OsRFT1,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 
43290	27499679	Akamatsu A., Shimamoto K., Kawano Y.	Crosstalk of Signaling Mechanisms Involved in Host Defense and Symbiosis Against Microorganisms in Rice.	Curr. Genomics	17(4)	297-307	2016	FLS2,PID2,RLCK176,LYP6,XA21,RLCK185,CERK1,_,_,RBOHB	Os-FLS2, OsFLS2, OsCLV2f, CLV2f,Pi-d2, Pi-d(t)2, PiD2(t), Pid2, PI-D2, Pi-d2(t), SDRLK-PID2, OsSDRLK-PID2,OsRLCK176,Os-LYP6, OsLYP6,Xa21*, Xa21, OsXA21,OsRLCK185,OsCERK1, OsLysM-RLK9, Os-CERK1, Os-LysM-RLK9, OsLysMRLK9, OsCERK1/OsLYK9, OsLYK9, LYK9,LYP4, Os-LYP4, OsLYP4,OsRacGEF1, RacGEF1, OsGEF1,rbohB, OsrbohB, Os rbohB, OsRbohB, OsNox1, Nox1, Os-RbohB, RbohB, OsRboh1, Rboh1
43291	27573887	Wang L., Wang C., Wang Y., Niu M., Ren Y., Zhou K., Zhang H., Lin Q., Wu F., Cheng Z., Wang J., Zhang X., Guo X., Jiang L., Lei C., Wang J., Zhu S., Zhao Z., Wan J.	WSL3, a component of the plastid-encoded plastid RNA polymerase, is essential for early chloroplast development in rice.	Plant Mol. Biol.			2016	WP2,WSL2,_,_,_,_,_,_,_,_,_,_,WSL3	TRXZ, OsPAP10, PAP10, OsPAP10/OsTRXz, OsTRXz, TRXz, OsTrx25, Trx25,,OsPAP8, PAP8,OsPAP2, PAP2, OsPAP2/OspTAC2, OspTAC2, pTAC2,OsPAP5, PAP5, OsPAP5/OspTAC12, OspTAC12, pTAC12,OsPAP3, PAP3, OsPAP3/OspTAC10, OspTAC10, pTAC10,OsPAP12, PAP12, OsPAP12/OspTAC7, OspTAC7, pTAC7,OsPAP7, PAP7, OsPAP7/OspTAC14, OspTAC14, pTAC14,OsPAP6, PAP6, OsPAP6/OsFLN1, OsFLN1, FLN1,OsPAP9, PAP9, OsPAP9/OsFSD2, OsFSD2, FSD2,OsPAP11, PAP11,OsPAP4, PAP4, OsPAP4/OsFSD3, OsFSD3, FSD3,OspTAC3, pTAC3, OsPAP1, PAP1
43292	27549111	Gao Y., Liu C., Li Y., Zhang A., Dong G., Xie L., Zhang B., Ruan B., Hong K., Xue D., Zeng D., Guo L., Qian Q., Gao Z.	QTL analysis for chalkiness of rice and fine mapping of a candidate gene for qACE9.	Rice (N Y)	9(1)	41	2016	AGPS1	OsAGPS1, APS1, OsAPS1, AGPsma
43293	27514852	Kong W., Yu X., Chen H., Liu L., Xiao Y., Wang Y., Wang C., Lin Y., Yu Y., Wang C., Jiang L., Zhai H., Zhao Z., Wan J.	The catalytic subunit of magnesium-protoporphyrin IX monomethyl ester cyclase forms a chloroplast complex to regulate chlorophyll biosynthesis in rice.	Plant Mol. Biol.	92(1-2)	177-91	2016	LCAA,YL1,FGL,_	OsLCAA, YGL19, OsYGL19,MTC, OsMTC, YGL8, OsYGL8, OsCRD1, CRD1, OsCRD, CRD, YL-1, PNZIP, OsPNZIP,fgl(fl), fl, fgl, OsFGL, OsPorB, PoPA, PORA, porA, OsPORA, PORB, OsPORB,OsFLU1, FLU1
43294	27502283	Hwang S.K., Koper K., Satoh H., Okita T.W.	Rice endosperm starch phosphorylase (Pho1) assembles with disproportionating enzyme (Dpe1) to form a protein complex that enhances synthesis of malto-oligosaccharides.	J. Biol. Chem.			2016	DPE1,PHO1,DPE2	OsDPE1, OsDpe1, Dpe1 ,Pho1, OsPho1, OsPHOL, PHOL, OsPHOI, PHOI,OsDPE2, OsDpe2, Dpe2
43295	27570530	Chen B.X., Li W.Y., Gao Y.T., Chen Z.J., Zhang W.N., Liu Q.J., Chen Z., Liu J.	Involvement of polyamine oxidase-Produced Hydrogen Peroxide during Coleorhiza-Limited Germination of Rice Seeds.	Front Plant Sci	7	1219	2016	PAO4,PAO7,_,PAOA,PAO5,_,PAO3,PAO1,PAOB,_,_	OsPAO4, OsAO1, AO1,OsPAO7, OsPAO3, PAO3,OsHDMA702, HDMA702, OsPAO8, PAO8,PAOa, OsPAO2, PAO2, OsPAOa,OsPAO5, OsAO2, AO2,OsHDMA701, HDMA701, OsPAO9, PAO9,OsPAO3, OsAO3, AO3,OsPAO1, OsAO4, AO4,PAOb, OsPAOb, OsPAO6, OsPAO2, PAO6, PAO2,OsHDMA704, HDMA704, OsPAO11, PAO11,OsHDMA703, HDMA703, OsPAO10, PAO10
43296	27539813	Blanvillain-Baufum? S., Reschke M., Sol? M., Auguy F., Doucoure H., Szurek B., Meynard D., Portefaix M., Cunnac S., Guiderdoni E., Boch J., Koebnik R.	Targeted promoter editing for rice resistance to Xanthomonas oryzae pv. oryzae reveals differential activities for SWEET14-inducing TAL effectors.	Plant Biotechnol. J.			2016	XA41	OsSWEET14, SWEET14, Os11N3, Os-11N3, 11N3, Xa41(t), xa41, Os11N3/SWEET14, OsSWEET14/Os11N3
43297	27497286	Qu L., Wu C., Zhang F., Wu Y., Fang C., Jin C., Liu X., Luo J.	Rice putative methyltransferase gene OsTSD2 is required for root development involving pectin modification.	J. Exp. Bot.			2016	TSD2 	OsTSD2, OsQUA2, QUA2 
43298	27512017	Hu Q., Tang D., Wang H., Shen Y., Chen X., Ji J., Du G., Li Y., Cheng Z.	The endonuclease homolog Osrad1 promotes accurate meiotic double-strand break repair by suppressing non-homologous end joining.	Plant Physiol.			2016	_,_,_	OsRAD9, RAD9 ,OsHUS1, HUS1 ,OsRAD1, RAD1 
43299	27519312	Miyata K., Hayafune M., Kobae Y., Kaku H., Nishizawa Y., Masuda Y., Shibuya N., Nakagawa T.	Evaluation of the Role of the LysM Receptor-Like Kinase, OsNFR5/OsRLK2 for AM Symbiosis in Rice.	Plant Cell Physiol.			2016	AM3,CERK1,RAM1,AM11,AM1,LYK4	OsAM3, OsLysMe2, LysMe2,OsCERK1, OsLysM-RLK9, Os-CERK1, Os-LysM-RLK9, OsLysMRLK9, OsCERK1/OsLYK9, OsLYK9, LYK9,OsRAM1, OsGRAS43, GRAS43,AM11,OsAM1, prx53, OsPRX53,OsLysM-RLK1, LysM-RLK1, OsLYK4, OsNFR5/OsRLK2, OsNFR5, NFR5, OsRLK2, RLK2
43300	27555514	Chen X., Li J., Wang L., Ma G., Zhang W.	A mutagenic study identifying critical residues for the structure and function of rice manganese transporter OsMTP8.1.	Sci Rep	6	32073	2016	MTP8.1,MTP9	OsMTP8.1,OsMTP9
43301	27493611	Jung G.Y., Park J.Y., Choi H.J., Yoo S.J., Park J.K., Jung H.W.	A Rice Gene Homologous to Arabidopsis AGD2-LIKE DEFENSE1 Participates in disease resistance Response against Infection with Magnaporthe oryzae.	Plant Pathol. J.	32(4)	357-62	2016	PR1A,PR1B,_	OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1, OsPR1b, PR1alpha, OsPR1alpha,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1, OsPR1a, PR1a,OsALD1, ALD1
43302	27527801	Tantong S., Pringsulaka O., Weerawanich K., Meeprasert A., Rungrotmongkol T., Sarnthima R., Roytrakul S., Sirikantaramas S.	Two novel antimicrobial defensins from rice identified by gene coexpression network analyses.	Peptides	84	7-16	2016		
43303	27176759	Zhao L., Qiu G., Anderson C.W., Meng B., Wang D., Shang L., Yan H., Feng X.	Mercury methylation in rice paddies and its possible controlling factors in the Hg mining area, Guizhou province, Southwest China.	Environ. Pollut.	215	1-9	2016		
43304	27242875	Wei Y., Zeng H., Hu W., Chen L., He C., Shi H.	Comparative Transcriptional Profiling of Melatonin Synthesis and Catabolic Genes Indicates the Possible Role of Melatonin in Developmental and Stress Responses in Rice.	Front Plant Sci	7	676	2016		
43305	27229732	Li B., Liu D., Li Q., Mao X., Li A., Wang J., Chang X., Jing R.	Overexpression of wheat gene TaMOR improves root system architecture and grain yield in Oryza sativa.	J. Exp. Bot.	67(14)	4155-67	2016		
43306	27197779	Triplett L.R., Cohen S.P., Heffelfinger C., Schmidt C.L., Huerta A.I., Tekete C., Verdier V., Bogdanove A.J., Leach J.E.	A resistance locus in the American heirloom rice variety Carolina Gold Select is triggered by TAL effectors with diverse predicted targets and is effective against African strains of Xanthomonas oryzae pv. oryzicola.	Plant J.			2016		
43307	27436946	Yang Y., Zhou J., Li J., Xu P., Zhang Y., Tao D.	Mapping QTLs for hybrid sterility in three AA genome wild species of Oryza.	Breed. Sci.	66(3)	367-71	2016		
43308	27178300	Mizobuchi R., Fukuoka S., Tsushima S., Yano M., Sato H.	QTLs for Resistance to Major Rice Diseases Exacerbated by Global Warming: Brown Spot, Bacterial Seedling Rot, and bacterial grain rot.	Rice (N Y)	9(1)	23	2016		
43309	27187354	Wang F., Li W., Zhu J., Fan F., Wang J., Zhong W., Wang M.B., Liu Q., Zhu Q.H., Zhou T., Lan Y., Zhou Y., Yang J.	Hairpin RNA Targeting Multiple Viral Genes Confers Strong Resistance to Rice Black-Streaked Dwarf Virus.	Int J Mol Sci	17(5)		2016		
43310	27194741	Ferrero-Serrano ?., Assmann S.M.	The alpha-subunit of the rice heterotrimeric G protein, RGA1, regulates drought tolerance during the vegetative phase in the dwarf rice mutant d1.	J. Exp. Bot.	67(11)	3433-43	2016		
43311	27242842	Li Y., Wang R., Hu Z., Li H., Lu S., Zhang J., Lin Y., Zhou F.	Expression of a Codon-Optimized dsdA Gene in Tobacco Plastids and Rice Nucleus Confers D-Serine Tolerance.	Front Plant Sci	7	640	2016		
43312	27142801	Tian D., Chen Z., Chen Z., Zhou Y., Wang Z., Wang F., Chen S.	Allele-specific marker-based assessment revealed that the rice blast resistance genes Pi2 and Pi9 have not been widely deployed in Chinese indica rice cultivars.	Rice (N Y)	9(1)	19	2016		
43313	27165311	Pradhan S., Chakraborty A., Sikdar N., Chakraborty S., Bhattacharyya J., Mitra J., Manna A., Dutta Gupta S., Sen S.K.	Marker-free transgenic rice expressing the vegetative insecticidal protein (Vip) of Bacillus thuringiensis shows broad insecticidal properties.	Planta			2016		
43314	27209244	Yu H.Y., Ding X., Li F., Wang X., Zhang S., Yi J., Liu C., Xu X., Wang Q.	The availabilities of arsenic and cadmium in rice paddy fields from a mining area: The role of soil extractable and plant silicon.	Environ. Pollut.	215	258-65	2016		
43315	27050577	Scheuermann K.K., Jia Y.	Identification of a Pi9-Containing Rice Germplasm with a Newly Developed Robust Marker.	Phytopathology	106(8)	871-6	2016		
43316	27211925	Chen H., Li C., Liu L., Zhao J., Cheng X., Jiang G., Zhai W.	The Fd-GOGAT1 mutant gene lc7 confers resistance to Xanthomonas oryzae pv. Oryzae in rice.	Sci Rep	6	26411	2016		
43317	27173349	Mertz-Henning LM., Pegoraro C., Maia L.C., Venske E., Rombaldi C.V., Costa de Oliveira A.	Expression profile of rice Hsp genes under anoxic stress.	Genet. Mol. Res.	15(2)		2016		
43318	27208229	Garc?s HM., Spencer V.M., Kim M.	Features of Rice DNA Methylation Pathways in Floral Symmetry.	Plant Physiol.	171(3)	2055-68	2016		
43319	27126515	Singh R., Dangol S., Chen Y., Choi J., Cho Y.S., Lee J.E., Choi M.O., Jwa N.S.	Magnaporthe oryzae Effector AVR-Pii Helps to Establish Compatibility by Inhibition of the Rice NADP-Malic Enzyme Resulting in Disruption of Oxidative Burst and Host Innate Immunity.	Mol. Cells	39(5)	426-38	2016		
43320	27297991	Tang X.J., Peng C., Zhang J., Cai Y., You X.M., Kong F., Yan H.G., Wang G.X., Wang L., Jin J., Chen W.W., Chen X.G., Ma J., Wang P., Jiang L., Zhang W.W., Wan J.M.	ADP-glucose pyrophosphorylase large subunit 2 is essential for storage substance accumulation and subunit interactions in rice endosperm.	Plant Sci.	249	70-83	2016		
43321	27137867	Tan S., Liu F., Pan X.X., Zang Y.P., Jin F., Zu W.X., Qi X.T., Xiao W., Yin L.P.	CSN6, a subunit of the COP9 signalosome, is involved in early response to iron deficiency in Oryza sativa.	Sci Rep	6	25485	2016	JAB1,_,ABI3,NAS1,IRO2,CSN6,NAS2,IRT1,YSL15	Osjab1, jab1, OsJAB1, CSN5, OsCSN5,OsCSN5A CSN5A, ,OsCUL1, CUL1,OsLFL2, LFL2, OsIDEF1, IDEF1, OsABI3,OsNAS1,OsIRO2, OsbHLH056, bHLH056, bHLH56, OsbHLH56,OsCSN6,OsNAS2, OsNAS1,OsIRT1, ZIP10, OsZIP10, OsZIP12, ZIP12,OsYSL15, OsYs7
43322	27220955	Kotake T., Yamanashi Y., Imaizumi C., Tsumuraya Y.	Metabolism of L-arabinose in plants.	J. Plant Res.	129(5)	781-92	2016		
43323	27174847	Hu L., Li H., Qin R., Xu R., Li J., Li L., Wei P., Yang J.	Plant phosphomannose isomerase as a selectable marker for rice transformation.	Sci Rep	6	25921	2016		
43324	27242831	Bhattacharjee A., Khurana J.P., Jain M.	Characterization of Rice Homeobox Genes, OsHOX22 and OsHOX24, and Over-expression of OsHOX24 in Transgenic Arabidopsis Suggest Their Role in Abiotic Stress Response.	Front Plant Sci	7	627	2016	HOX22,HOX24	Oshox22, OsHox22, OsHDZ14, OsHDZIP14, HDZ14, HDZIP14,Oshox24, OsHox24, OsSLI1, OsHDZ6, OsHDZIP6, HDZ6, HDZIP6
43325	27070427	Jia Y., Zhou E., Lee S., Bianco T.	Coevolutionary Dynamics of Rice Blast Resistance Gene Pi-ta and Magnaporthe oryzae Avirulence Gene AVR-Pita 1.	Phytopathology	106(7)	676-83	2016		
43326	27213684	Rahman H., Ramanathan V., Nallathambi J., Duraialagaraja S., Muthurajan R.	Over-expression of a NAC 67 transcription factor from finger millet (Eleusine coracana L.) confers tolerance against salinity and drought stress in rice.	BMC Biotechnol.	16 Suppl 1	35	2016		
43327	27169562	Yamauchi T., Tanaka A., Mori H., Takamure I., Kato K., Nakazono M.	Ethylene-dependent aerenchyma formation in adventitious roots is regulated differently in rice and maize.	Plant Cell Environ.			2016		
43328	27436945	Zhao L., Lei J., Huang Y., Zhu S., Chen H., Huang R., Peng Z., Tu Q., Shen X., Yan S.	Mapping quantitative trait loci for heat tolerance at anthesis in rice using chromosomal segment substitution lines.	Breed. Sci.	66(3)	358-66	2016		
43329	27323093	Qu D., Yan F., Li M.A., Varotto C., Zhao Z.Y.	Comparative analysis of miR168 promoters in three plant species.	Genet. Mol. Res.	15(2)		2016		
43330	27215671	Kim M.Y., Kim T.G., Yang M.S.	Production and immunogenicity of Actinobacillus pleuropneumoniae ApxIIA protein in transgenic rice callus.	Protein Expr. Purif.			2016		
43331	27240428	Miyamoto K., Enda I., Okada T., Sato Y., Watanabe K., Sakazawa T., Yumoto E., Shibata K., Asahina M., Iino M., Yokota T., Okada K., Yamane H.	Jasmonoyl-l-isoleucine is required for the production of a flavonoid phytoalexin but not diterpenoid phytoalexins in ultraviolet-irradiated rice leaves.	Biosci. Biotechnol. Biochem.	80(10)	1934-8	2016		
43332	27246014	Liu Y., Chen L., Liu Y., Dai H., He J., Kang H., Pan G., Huang J., Qiu Z., Wang Q., Hu J., Liu L., Chen Y., Cheng X., Jiang L., Wan J.	Marker assisted pyramiding of two brown planthopper resistance genes, Bph3 and Bph27 (t), into elite rice Cultivars.	Rice (N Y)	9(1)	27	2016		
43333	27317309	Li Q., Zhang D., Chen M., Liang W., Wei J., Qi Y., Yuan Z.	Development of japonica Photo-Sensitive Genic Male Sterile Rice Lines by Editing Carbon Starved Anther Using CRISPR/Cas9.	J Genet Genomics	43(6)	415-9	2016		
43334	27335351	Kaneko K., Takamatsu T., Inomata T., Oikawa K., Itoh K., Hirose K., Amano M., Nishimura S., Toyooka K., Matsuoka K., Pozueta-Romero J., Mitsui T.	N-Glycomic and Microscopic Subcellular Localization Analyses of NPP1, 2 and 6 Strongly Indicate that trans-Golgi Compartments Participate in the Golgi to Plastid Traffic of Nucleotide Pyrophosphatase/Phosphodiesterases in Rice.	Plant Cell Physiol.	57(8)	1610-28	2016		
43335	26976728	Pradhan S.K., Nayak D.K., Pandit E., Behera L., Anandan A., Mukherjee A.K., Lenka S., Barik D.P.	Incorporation of Bacterial Blight Resistance Genes Into Lowland Rice Cultivar Through Marker-Assisted Backcross Breeding.	Phytopathology	106(7)	710-8	2016		
43336	27182958	Shahzad R., Waqas M., Khan A.L., Asaf S., Khan M.A., Kang S.M., Yun B.W., Lee I.J.	Seed-borne endophytic Bacillus amyloliquefaciens RWL-1 produces gibberellins and regulates endogenous phytohormones of Oryza sativa.	Plant Physiol. Biochem.	106	236-43	2016		
43337	27133567	Miyamoto K., Fujita M., Shenton M.R., Akashi S., Sugawara C., Sakai A., Horie K., Hasegawa M., Kawaide H., Mitsuhashi W., Nojiri H., Yamane H., Kurata N., Okada K., Toyomasu T.	Evolutionary trajectory of phytoalexin biosynthetic gene clusters in rice.	Plant J.			2016		
43338	27242822	Dong W., Thomas N., Ronald P.C., Goyer A.	Overexpression of Thiamin Biosynthesis Genes in Rice Increases Leaf and Unpolished Grain Thiamin Content But Not Resistance to Xanthomonas oryzae pv. oryzae.	Front Plant Sci	7	616	2016		
43339	27436950	Maeda S., Hayashi N., Sasaya T., Mori M.	Overexpression of BSR1 confers broad-spectrum resistance against two bacterial diseases and two major fungal diseases in rice.	Breed. Sci.	66(3)	396-406	2016		
43340	27241493	Zheng M., Wang Y., Liu X., Sun J., Wang Y., Xu Y., Lv J., Long W., Zhu X., Guo X., Jiang L., Wang C., Wan J.	The RICE MINUTE-like1 (RML1) gene, encoding a ribosomal large subunit protein L3B, regulates leaf morphology and plant architecture in rice.	J. Exp. Bot.	67(11)	3457-69	2016		
43341	27242816	Rahman A., Nahar K., Hasanuzzaman M., Fujita M.	Calcium Supplementation Improves Na(+)/K(+) Ratio, Antioxidant Defense and Glyoxalase Systems in Salt-Stressed Rice Seedlings.	Front Plant Sci	7	609	2016		
43342	27258255	Huangfu J., Li J., Li R., Ye M., Kuai P., Zhang T., Lou Y.	The Transcription Factor OsWRKY45 Negatively Modulates the Resistance of Rice to the Brown Planthopper Nilaparvata lugens.	Int J Mol Sci	17(6)		2016		
43343	27167516	Toriyama K., Kazama T.	Development of Cytoplasmic Male Sterile IR24 and IR64 Using CW-CMS/Rf17 System.	Rice (N Y)	9(1)	22	2016		
43344	27241276	Harmoko R., Yoo J.Y., Ko K.S., Ramasamy N.K., Hwang B.Y., Lee E.J., Kim H.S., Lee K.J., Oh D.B., Kim D.Y., Lee S., Li Y., Lee S.Y., Lee K.O.	N-glycan containing a core alpha1,3-fucose residue is required for basipetal auxin transport and gravitropic response in rice (Oryza sativa).	New Phytol.	212(1)	108-22	2016		
43345	27246096	Xu D., Shi J., Rautengarten C., Yang L., Qian X., Uzair M., Zhu L., Luo Q., An G., Wa?mann F., Schreiber L., Heazlewood J.L., Scheller H.V., Hu J., Zhang D., Liang W.	Defective pollen Wall 2 (DPW2) Encodes an Acyl Transferase Required for Rice pollen Development.	Plant Physiol.			2016	DPW2	OsDPW2
43346	27242827	Fabre D., Adriani D.E., Dingkuhn M., Ishimaru T., Punzalan B., Lafarge T., Cl?ment-Vidal A., Luquet D.	The qTSN4 Effect on flag leaf Size, Photosynthesis and panicle size, Benefits to Plant Grain Production in Rice, Depending on Light Availability.	Front Plant Sci	7	623	2016		
43347	27242837	Samejima H., Babiker A.G., Mustafa A., Sugimoto Y.	Identification of Striga hermonthica-Resistant Upland Rice Varieties in Sudan and Their Resistance Phenotypes.	Front Plant Sci	7	634	2016		
43348	27195813	Wu Y., Mirzaei M., Pascovici D., Chick J.M., Atwell B.J., Haynes P.A.	Quantitative proteomic analysis of two different rice varieties reveals that drought tolerance is correlated with reduced abundance of photosynthetic machinery and increased abundance of ClpD1 protease.	J Proteomics	143	73-82	2016		
43349	27436953	Sakata M., Seno M., Matsusaka H., Takahashi K., Nakamura Y., Yamagata Y., Angeles E.R., Mochizuki T., Kumamaru T., Sato M., Enomoto A., Tashiro K., Kuhara S., Satoh H., Yoshimura A.	Development and evaluation of rice giant embryo mutants for high oil content originated from a high-yielding cultivar 'Mizuhochikara'.	Breed. Sci.	66(3)	425-33	2016		
43350	27142249	Pham C.L., Rey A., Lo V., Soul?s M., Ren Q., Meisl G., Knowles T.P., Kwan A.H., Sunde M.	Self-assembly of MPG1, a hydrophobin protein from the rice blast fungus that forms functional amyloid coatings, occurs by a surface-driven mechanism.	Sci Rep	6	25288	2016		
43351	27218863	Ma X., Zhu C., Yang N., Gan L., Xia K.	gamma-Aminobutyric acid addition alleviates ammonium toxicity by limiting ammonium accumulation in rice (Oryza sativa) seedlings.	Physiol Plant			2016		
43352	27165035	Kim S., Cho Y.J., Song E.S., Lee S.H., Kim J.G., Kang L.W.	Time-resolved pathogenic gene expression analysis of the plant pathogen Xanthomonas oryzae pv. oryzae.	BMC Genomics	17	345	2016		
43353	27164982	Shamsudin N.A., Swamy B.P., Ratnam W., Sta Cruz MT., Sandhu N., Raman A.K., Kumar A.	Pyramiding of drought yield QTLs into a high quality Malaysian rice cultivar MRQ74 improves yield under reproductive stage drought.	Rice (N Y)	9(1)	21	2016		
43354	27223617	Zhou H., Luo C., Fang X., Xiang Y., Wang X., Zhang R., Chen Z.	Loss of <EM class="new_gene">GltB</EM> Inhibits Biofilm Formation and Biocontrol Efficiency of Bacillus subtilis Bs916 by Altering the Production of gamma-Polyglutamate and Three Lipopeptides.	PLoS ONE	11(5)	e0156247	2016		
43355	27145723	Scafaro A.P., Gall? A., Van Rie J., Carmo-Silva E., Salvucci M.E., Atwell B.J.	heat tolerance in a wild Oryza species is attributed to maintenance of Rubisco activation by a thermally stable Rubisco activase ortholog.	New Phytol.	211(3)	899-911	2016		
43356	27160855	Kassa M.T., Haas S., Schliephake E., Lewis C., You F.M., Pozniak C.J., Kr?mer I., Perovic D., Sharpe A.G., Fobert P.R., Koch M., Wise I.L., Fenwick P., Berry S., Simmonds J., Hourcade D., Senellart P., Duchalais L., Robert O., F?rster J., Thomas J.B., Friedt W., Ordon F., Uauy C., McCartney C.A.	A saturated SNP linkage map for the orange wheat blossom midge resistance gene Sm1.	Theor. Appl. Genet.	129(8)	1507-17	2016		
43357	27136273	Tadrowski S., Pedroso M.M., Sieber V., Larrabee J.A., Guddat L.W., Schenk G.	Metal Ions Play an Essential Catalytic Role in the Mechanism of Ketol-acid reductoisomerase.	Chemistry	22(22)	7427-36	2016		
43358	27198693	Zhang J., Luo W., Zhao Y., Xu Y., Song S., Chong K.	Comparative metabolomic analysis reveals a reactive oxygen species-dominated dynamic model underlying chilling environment adaptation and tolerance in rice.	New Phytol.	211(4)	1295-310	2016		
43359	27304219	Cui K., Wang H., Liao S., Tang Q., Li L., Cui Y., He Y.	Transcriptome Sequencing and Analysis for Culm Elongation of the World's Largest Bamboo (Dendrocalamus sinicus).	PLoS ONE	11(6)	e0157362	2016		
43360	27286833	Kaur N., Dhawan M., Sharma I., Pati P.K.	Interdependency of Reactive Oxygen Species generating and scavenging system in salt sensitive and salt tolerant cultivars of rice.	BMC Plant Biol.	16(1)	131	2016		
43361	27330561	Mizuno H., Kasuga S., Kawahigashi H.	The sorghum SWEET gene family: stem sucrose accumulation as revealed through transcriptome profiling.	Biotechnol Biofuels	9	127	2016		
43362	27313595	Zhang W., Zhao G., Gao L., Kong X., Guo Z., Wu B., Jia J.	Functional Studies of heading date-Related Gene TaPRR73, a Paralog of Ppd1 in Common Wheat.	Front Plant Sci	7	772	2016		
43363	27320861	Horiuchi R., Hirotsu N., Miyanishi N.	N-glycan transition of the early developmental stage in Oryza sativa.	Biochem. Biophys. Res. Commun.	477(3)	426-32	2016		
43364	27323767	Hur Y.J., Cho J.H., Park H.S., Noh T.H., Park D.S., Lee J.Y., Sohn Y.B., Shin D., Song Y.C., Kwon Y.U., Lee J.H.	Pyramiding of two rice bacterial blight resistance genes, Xa3 and Xa4, and a closely linked cold-tolerance QTL on chromosome 11.	Theor. Appl. Genet.			2016		
43365	27357959	Liu X., Zhang C., Wang X., Liu Q., Yuan D., Pan G., Sun S.S., Tu J.	Development of high-lysine rice via endosperm-specific expression of a foreign LYSINE RICH PROTEIN gene.	BMC Plant Biol.	16(1)	147	2016		
43366	27357911	Lin Y., Tan L., Zhao L., Sun X., Sun C.	RSL3, a protein with AAA+ domain localized in chloroplast, sustains leaf longevity in rice.	J Integr Plant Biol			2016		
43367	27419124	Lee G.H., Kang I.K., Kim K.M.	Mapping of Novel QTL Regulating Grain Shattering Using Doubled Haploid Population in Rice (Oryza sativa L.).	International Journal of Genomics	2016	2128010	2016		
43368	27352859	Tian T., You Q., Zhang L., Yi X., Yan H., Xu W., Su Z.	SorghumFDB: sorghum functional genomics database with multidimensional network analysis.	Database (Oxford)	2016		2016		
43369	27298602	Park H.J., Park C.J., Bae N., Han S.W.	Deciphering the Role of Tyrosine Sulfation in Xanthomonas oryzae pv. oryzae Using Shotgun Proteomic Analysis.	Plant Pathol. J.	32(3)	266-72	2016		
43370	27349470	Habachi-Houimli Y., Khalfallah Y., Makni H., Makni M., Bouktila D.	Large-scale bioinformatic analysis of the regulation of the disease resistance NBS gene family by microRNAs in Poaceae.	C. R. Biol.			2016		
43371	27251022	Ma X., Fu Y., Zhao X., Jiang L., Zhu Z., Gu P., Xu W., Su Z., Sun C., Tan L.	Genomic structure analysis of a set of Oryza nivara introgression lines and identification of yield-associated QTLs using whole-genome resequencing.	Sci Rep	6	27425	2016		
43372	27363861	Zhang H.W., Fan Y.Y., Zhu Y.J., Chen J.Y., Yu S.B., Zhuang J.Y.	Dissection of the qTGW1.1 region into two tightly-linked minor QTLs having stable effects for grain weight in rice.	BMC Genet.	17(1)	98	2016		
43373	27172458	Mohanty B., Lakshmanan M., Lim S.H., Kim J.K., Ha S.H., Lee D.Y.	Light-specific transcriptional regulation of the accumulation of carotenoids and phenolic compounds in rice leaves.	Plant Signal Behav	11(6)	e1184808	2016		
43374	27366148	Metz S., Cabrera J.M., Rueda E., Giri F., Amavet P.	FullSSR: Microsatellite Finder and Primer Designer.	Adv Bioinformatics	2016	6040124	2016		
43375	27345721	Xu H., Watanabe K.A., Zhang L., Shen Q.J.	WRKY transcription factor genes in wild rice Oryza nivara.	DNA Res.	23(4)	311-23	2016		
43376	27348754	Khan N.U., Liu M., Yang X., Qiu D.	Fungal Elicitor MoHrip2 Induces Disease Resistance in Rice Leaves, Triggering Stress-Related Pathways.	PLoS ONE	11(6)	e0158112	2016		
43377	27309534	Kobayashi T., Sasaki S., Utsumi Y., Fujita N., Umeda K., Sawada T., Kubo A., Abe J., Colleoni C., Ball S., Nakamura Y.	Comparison of Chain-Length Preferences and Glucan Specificities of Isoamylase-Type alpha-Glucan Debranching Enzymes from Rice, Cyanobacteria, and Bacteria.	PLoS ONE	11(6)	e0157020	2016		
43378	27318280	Shibaya T., Hori K., Ogiso-Tanaka E., Yamanouchi U., Shu K., Kitazawa N., Shomura A., Ando T., Ebana K., Wu J., Yamazaki T., Yano M.	Hd18, Encoding Histone Acetylase Related to Arabidopsis FLOWERING LOCUS D, is Involved in the Control of flowering time in Rice.	Plant Cell Physiol.			2016		
43379	27255512	Adriani D.E., Dingkuhn M., Dardou A., Adam H., Luquet D., Lafarge T.	Rice panicle plasticity in Near Isogenic Lines carrying a QTL for larger panicle is genotype and environment dependent.	Rice (N Y)	9(1)	28	2016		
43380	27357232	Yang L., Wu Y., Yu M., Mao B., Zhao B., Wang J.	Genome-wide transcriptome analysis of female-sterile rice ovule shed light on its abortive mechanism.	Planta			2016		
43381	27294659	Li N., Li Y.	Signaling pathways of seed size control in plants.	Curr. Opin. Plant Biol.	33	23-32	2016		
43382	27336625	Salvatore S., Vandenplas Y.	Hydrolyzed Proteins in Allergy.	Nestle Nutr Inst Workshop Ser	86	11-27	2016		
43383	27252468	Feng Z., Wu C., Wang C., Roh J., Zhang L., Chen J., Zhang S., Zhang H., Yang C., Hu J., You X., Liu X., Yang X., Guo X., Zhang X., Wu F., Terzaghi W., Kim S.K., Jiang L., Wan J.	SLG controls grain size and leaf angle by modulating brassinosteroid homeostasis in rice.	J. Exp. Bot.	67(14)	4241-53	2016	BRD1,DLT,DWARF4,SLG,BZR1,D11,D2,D61	brd1, OsDWARF, DWARF, OsBR6ox, BR6ox, CYP85A1, CYP85A4, OsDWF, CYP85A1/OsDWARF, OsBRD1, OsCYP85A1,dlt, OsGRAS32, OsDLT, OsDLT1, DTL1, OsGRAS-32, OsGRAS32, GRAS-32, GRAS32, SMOS2/DLT, SMOS2, OsSMOS2, OsGS6, GS6,OsDWARF4, osdwarf4, OsDWF4, DWF4, CYP90B2, OsCYP90B2, D4, OsD4,OsSLG,OsBZR1, Os BZR1, OsBES1-6, BES1-6,d11(d8), dwf10, d8, D11/CYP724B1, d11, CYP724B1, GNS4, OsD11, PMM1, OsPMM1, PMM1/D11, NBG4, OsCPB1, CPB1, CPB1/D11,d2, dwf2, CYP90D2, D2/CYP90D2, OsD2, SMG11, OsSMG11, D2/SMG11, OsD2a, OsD2b,d61*, dwf42, d61, OsBRI1, OSBRI1, BRI1, Os BRI1, Osbri1, OsBRKq1, BRKq1
43384	27379107	Azizi P., Rafii M.Y., Abdullah S.N., Hanafi M.M., Maziah M., Sahebi M., Ashkani S., Taheri S., Jahromi M.F.	Over-Expression of the Pikh Gene with a CaMV 35S Promoter Leads to Improved Blast Disease (Magnaporthe oryzae) Tolerance in Rice.	Front Plant Sci	7	773	2016		
43385	27336225	Lombardo F., Kuroki M., Yao S.G., Shimizu H., Ikegaya T., Kimizu M., Ohmori S., Akiyama T., Hayashi T., Yamaguchi T., Koike S., Yatou O., Yoshida H.	The superwoman1-cleistogamy2 mutant is a novel resource for gene containment in rice.	Plant Biotechnol. J.			2016		
43386	27273847	Zhang T., Li T., Yang X., Simelton E.	Model biases in rice phenology under warmer climates.	Sci Rep	6	27355	2016		
43387	27356912	Nguyen T.D., Moon S., Nguyen V.N., Gho Y., Chandran A.K., Soh M.S., Song J.T., An G., Oh S.A., Park S.K., Jung K.H.	Genome-wide identification and analysis of rice genes preferentially expressed in pollen at an early developmental stage.	Plant Mol. Biol.	92(1-2)	71-88	2016		
43388	27457988	Molla K.A., Karmakar S., Chanda P.K., Sarkar S.N., Datta S.K., Datta K.	Tissue-specific expression of Arabidopsis NPR1 gene in rice for sheath blight resistance without compromising phenotypic cost.	Plant Sci.	250	105-14	2016		
43389	27325119	Christoff A.P., Passaia G., Salvati C., Alves-Ferreira M., Margis-Pinheiro M., Margis R.	Rice bifunctional phytocystatin is a dual modulator of legumain and papain-like proteases.	Plant Mol. Biol.	92(1-2)	193-207	2016		
43390	27292630	Sun L., Lu Y., Yu F., Kronzucker H.J., Shi W.	Biological nitrification inhibition by rice root exudates and its relationship with nitrogen-use efficiency.	New Phytol.			2016		
43391	27368137	Du Z.Y., Arias T., Meng W., Chye M.L.	Plant acyl-CoA-binding proteins: An emerging family involved in plant development and stress responses.	Prog. Lipid Res.	63	165-81	2016		
43392	27362847	Hashemi A., Gharechahi J., Nematzadeh G., Shekari F., Hosseini S.A., Salekdeh G.H.	Two-dimensional blue native/SDS-PAGE analysis of whole cell lysate protein complexes of rice in response to salt stress.	J. Plant Physiol.	200	90-101	2016		
43393	27252469	Zhou W., Wang Y., Wu Z., Luo L., Liu P., Yan L., Hou S.	Homologs of SCAR/WAVE complex components are required for epidermal cell morphogenesis in rice.	J. Exp. Bot.	67(14)	4311-23	2016	LPL2,LPL3	,OsLPL3, DS8, OsDS8
43394	27321231	Sun H., Zhou S., Fu Z., Chen G., Zou G., Song X.	A two-year field measurement of methane and nitrous oxide fluxes from rice paddies under contrasting climate conditions.	Sci Rep	6	28255	2016		
43395	27367676	Dom?nguez-Avila JA., Gonz?lez-Aguilar GA., Alvarez-Parrilla E., de la Rosa LA.	Modulation of PPAR Expression and Activity in Response to Polyphenolic Compounds in High Fat Diets.	Int J Mol Sci	17(7)		2016		
43396	27297403	Zhu X., Guo S., Wang Z., Du Q., Xing Y., Zhang T., Shen W., Sang X., Ling Y., He G.	Map-based cloning and functional analysis of ygl8, which controls leaf colour in rice (Oryza sativa).	BMC Plant Biol.	16(1)	134	2016	HEME,FGL,SPL42,PSAB,YGL8,PSBC,PSAA	OsHEME, hemE, OshemE,fgl(fl), fl, fgl, OsFGL, OsPorB, PoPA, PORA, porA, OsPORA, PORB, OsPORB,PBD, PBGD, HEMC, OsSPL42, OsPBGD, OsPBD,PsaB, psaB, PsAA2, psaA2,,psbC, cp43, OsPSBC, OsCP43,PsaA, psaA, PsAA1, psaA1
43397	27252467	Yang Q.Q., Zhang C.Q., Chan M.L., Zhao D.S., Chen J.Z., Wang Q., Li Q.F., Yu H.X., Gu M.H., Sun S.S., Liu Q.Q.	Biofortification of rice with the essential amino acid lysine: molecular characterization, nutritional evaluation, and field performance.	J. Exp. Bot.	67(14)	4285-96	2016		
43398	27379149	Li X., Zhong Q., Li Y., Li G., Ding Y., Wang S., Liu Z., Tang S., Ding C., Chen L.	Triacontanol Reduces Transplanting Shock in Machine-Transplanted Rice by Improving the Growth and Antioxidant Systems.	Front Plant Sci	7	872	2016		
43399	27217091	Ren L., Huo H., Zhang F., Hao W., Xiao L., Dong C., Xu G.	The components of rice and watermelon root exudates and their effects on pathogenic fungus and watermelon defense.	Plant Signal Behav	11(6)	e1187357	2016		
43400	27372278	Tsuda H., Shiraki M., Inoue E., Saito T.	Generation of poly-beta-hydroxybutyrate from acetate in higher plants: Detection of acetoacetyl CoA reductase- and PHB synthase- activities in rice.	J. Plant Physiol.	201	9-16	2016		
43401	27327960	Azad A.K., Ahmed J., Alum M.A., Hasan M.M., Ishikawa T., Sawa Y., Katsuhara M.	Genome-Wide Characterization of Major Intrinsic Proteins in Four Grass Plants and Their Non-Aqua Transport Selectivity Profiles with Comparative Perspective.	PLoS ONE	11(6)	e0157735	2016		
43402	27318700	Jena K.K., Ballesfin M.L., Vinarao R.B.	Development of Oryza sativa L. by Oryza punctata Kotschy ex Steud. monosomic addition lines with high value traits by interspecific hybridization.	Theor. Appl. Genet.			2016		
43403	27403427	RoyChowdhury M., Li X., Qi H., Li W., Sun J., Huang C., Wu D.	Functional Characterization of 9-/13-LOXs in Rice and Silencing Their Expressions to Improve Grain Qualities.	Biomed Res Int	2016	4275904	2016		
43404	27390892	Poudyal R.S., Nath K., Zulfugarov I.S., Lee C.H.	Production of superoxide from photosystem II-light harvesting complex II supercomplex in STN8 kinase knock-out rice mutants under photoinhibitory illumination.	J. Photochem. Photobiol. B, Biol.	162	240-7	2016		
43405	27289587	Pompeiano A., Guglielminetti L.	Carbohydrate metabolism in germinating caryopses of Oryza sativa L. exposed to prolonged anoxia.	J. Plant Res.	129(5)	833-40	2016		
43406	27506365	Kang J.H., Jung H.J., Jung M.Y.	One step derivatization with British Anti-Lewsite in combination with gas chromatography coupled to triple-quadrupole tandem mass spectrometry for the fast and selective analysis of inorganic arsenic in rice.	Anal. Chim. Acta	934	231-8	2016		
43407	27446145	Vasudevan K., Vera Cruz CM., Gruissem W., Bhullar N.K.	Geographically Distinct and Domain-Specific Sequence Variations in the Alleles of rice blast resistance gene Pib.	Front Plant Sci	7	915	2016	PIB	Pi b(Pi s), Pis, Pib, Pi-s, Pi-hy
43408	27484220	Zou B., Hong X., Ding Y., Wang X., Liu H., Hua J.	Identification and analysis of copine/BONZAI proteins among evolutionarily diverse plant species.	Genome	59(8)	565-73	2016		
43409	27446120	Wu X., Zhang Y., Li Q.Q.	PlantAPA: A Portal for Visualization and Analysis of Alternative Polyadenylation in Plants.	Front Plant Sci	7	889	2016		
43410	27289079	Hutin M., C?sari S., Chalvon V., Michel C., Tran T.T., Boch J., Koebnik R., Szurek B., Kroj T.	Ectopic activation of the rice NLR heteropair RGA4/RGA5 confers resistance to bacterial blight and bacterial leaf streak diseases.	Plant J.			2016		
43411	27322607	Zhang L., Guo R., Fang Z., Liu B.	Genetically modified rice Bt-ShanYou63 expressing Cry1Ab/c protein does not harm Daphnia magna.	Ecotoxicol. Environ. Saf.	132	196-201	2016		
43412	27328708	Agarwal T., Grotewold E., Doseff A.I., Gray J.	MYB31/MYB42 Syntelogs Exhibit Divergent Regulation of Phenylpropanoid Genes in Maize, Sorghum and Rice.	Sci Rep	6	28502	2016		
43413	27342100	Guo F., Han N., Xie Y., Fang K., Yang Y., Zhu M., Wang J., Bian H.	The miR393a/target module regulates seed germination and seedling establishment under submergence in rice (Oryza sativa L.).	Plant Cell Environ.			2016		
43414	27337541	Guo C., Yao L., You C., Wang S., Cui J., Ge X., Ma H.	MID1 Plays an Important Role in Response to Drought Stress during Reproductive Development.	Plant J.			2016		
43415	27390725	Kim H., Kim O.W., Ha A.W., Park S.	Determination of Optimal Harvest Time of Chuchung Variety Green Rice(?) (Oryza sativa L.) with High Contents of GABA, gamma-Oryzanol, and alpha-Tocopherol.	Preventive Nutrition and Food Science	21(2)	97-103	2016		
43416	27264781	Lee H.J., Back K.	2-Hydroxymelatonin promotes the resistance of rice plant to multiple simultaneous abiotic stresses (combined cold and drought).	J. Pineal Res.			2016		
43417	27473144	Yang S.Q., Li W.Q., Miao H., Gan P.F., Qiao L., Chang Y.L., Shi C.H., Chen K.M.	rel2, A Gene Encoding An Unknown Function Protein which Contains DUF630 and DUF632 Domains Controls leaf rolling in Rice.	Rice (N Y)	9(1)	37	2016	REL2,RL14,CEF1,TMS10,ND1,SHL4,COW1,LC2,REL1,NAL1,OUL1,ACL1,ZHD2,ADL1,ACL-D,RL9	OsREL2, OsDLT10, DLT10, RSD1, OsRSD1, RSD1/REL2,2-ODD24, Os2-ODD24, 2ODD24, Os2ODD24, OsRL14,OsMYB103, OsMYB103L, CEF1/OsMYB103L, MYB103, MYB103L, OsMYB93, MYB93, OsFC9, FC9, Os2R_MYB74, 2R_MYB74,OsSERK4, OsSERL9, OsSERK2, OsBAK1-5, OsTMS10, SERK4, SERL9, SERK2, BAK1-5, OsBAK1, BAK1,CSLD4, OsCSLD4, OsCD1, CD1, DNL3, OsDNL3, NRL1, OsNRL1, SPO1, OsSPO1, SPO1/OsCSLD4,shl4, sh4, OsAGO7, SHO2, AGO7, SHL4/SHO2,OsCOW1, oscow1, OsYUC8, YUC8, NAL7, OsNAL7, OsYUCCA8, YUCCA8, FMO, OsFMO(t), REIN7, YUC8/REIN7,OsLC2, OsVIL2, VIL2, OsVIL3,OsREL1,nal1, cul1, GPS, SPIKE, SPIKE/LSCHL4/NAL1/GPS, SPIKE/NAL1, LSCHL4, OsNAL1,ROC5, Roc5(t), Roc5, GL2-5, OsROC5, CLF1, OsCLF1, OsOUL1, OsHDZ7, OsHDZIP7, HDZ7, HDZIP7,OsACL1, ACL2, OsACL2,OsZHD2,OsADL1,OsZHD1, ZHD1, OsACL-D, ZHD_G6, OsZHD_G6,rl9, SLL1/RL9, SLL1, OsSLL1, OsADD1, ADD1, KANADI1, AH2, OsAH2, CL1, OsCL1
43418	27474933	Cai B., Li Q., Xu Y., Yang L., Bi H., Ai X.	Genome-wide analysis of the fructose 1,6-bisphosphate aldolase (FBA) gene family and functional characterization of FBA7 in tomato.	Plant Physiol. Biochem.	108	251-265	2016		
43419	27403778	Ellur R.K., Khanna A., S GK., Bhowmick P.K., Vinod K.K., Nagarajan M., Mondal K.K., Singh N.K., Singh K., Prabhu K.V., Singh A.K.	Marker-aided Incorporation of Xa38, a Novel Bacterial Blight Resistance Gene, in PB1121 and Comparison of its Resistance Spectrum with xa13?+?Xa21.	Sci Rep	6	29188	2016		
43420	27436282	Xu J., Br?utigam A., Li Y., Weber A.P., Zhu X.G.	Systems analysis of cis-regulatory motifs in C4 photosynthesis genes using maize and rice leaf transcriptomic data during a process of de-etiolation.	J. Exp. Bot.			2016		
43421	27520410	Xu Q., Zhao M., Wu K., Fu X., Liu Q.	Emerging insights into heterotrimeric G protein signaling in plants.	J Genet Genomics			2016		
43422	27447698	Chen J., Tang L., Shi P., Yang B., Sun T., Cao W., Zhu Y.	Effects of short-term high temperature on grain quality and starch granules of rice (Oryza sativa L.) at post-anthesis stage.	Protoplasma			2016		
43423	27468288	Dash A.K., Rao R.N., Rao G.J., Verma R.L., Katara J.L., Mukherjee A.K., Singh O.N., Bagchi T.B.	Phenotypic and Marker-Assisted Genetic Enhancement of Parental Lines of Rajalaxmi, an Elite Rice Hybrid.	Front Plant Sci	7	1005	2016		
43424	27516765	Papolu P.K., Dutta T.K., Tyagi N., Urwin P.E., Lilley C.J., Rao U.	Expression of a cystatin transgene in Eggplant Provides Resistance to Root-knot Nematode, Meloidogyne incognita.	Front Plant Sci	7	1122	2016		
43425	27411514	Moin M., Bakshi A., Saha A., Udaya Kumar M., Reddy A.R., Rao K.V., Siddiq E.A., Kirti P.B.	Activation-tagging in indica rice identifies ribosomal proteins as potential targets for manipulation of water-use-efficiency and abiotic stress tolerance in plants.	Plant Cell Environ.			2016		
43426	27439383	Sebastian A., Ahmad I., Prasad M.N.	Iron plaque decrease cadmium accumulation in Oryza sativa L. by acting as a source of iron in addition to obstructing cadmium uptake.	Plant Biol (Stuttg)			2016		
43427	27393148	Zhou Y., Cheng Y., Yang Y., Li X., Supriyo B., Sun X., Yang Y.	Overexpression of SpCBL6, a calcineurin B-like protein of Stipa purpurea, enhanced cold tolerance and reduced drought tolerance in transgenic Arabidopsis.	Mol. Biol. Rep.	43(9)	957-66	2016		
43428	27543262	Xu R., Yang Y., Qin R., Li H., Qiu C., Li L., Wei P., Yang J.	Rapid improvement of grain weight via highly efficient CRISPR/Cas9-mediated multiplex genome editing in rice.	J Genet Genomics			2016		
43429	27450495	Das K., Panda B.B., Sekhar S., Kariali E., Mohapatra P.K., Shaw B.P.	Comparative proteomics of the superior and inferior spikelets at the early grain filling stage in rice cultivars contrast for panicle compactness and ethylene evolution.	J. Plant Physiol.	202	65-74	2016		
43430	27447459	Fedorowicz-Stro?ska O., Koczyk G., Kaczmarek M., Krajewski P., Sadowski J.	Genome-wide identification, characterisation and expression profiles of calcium-dependent protein kinase genes in barley (Hordeum vulgare L.).	J. Appl. Genet.			2016		
43431	27465821	Ookawa T., Aoba R., Yamamoto T., Ueda T., Takai T., Fukuoka S., Ando T., Adachi S., Matsuoka M., Ebitani T., Kato Y., Mulsanti I.W., Kishii M., Reynolds M., Pi?era F., Kotake T., Kawasaki S., Motobayashi T., Hirasawa T.	Precise estimation of genomic regions controlling lodging resistance using a set of reciprocal chromosome segment substitution lines in rice.	Sci Rep	6	30572	2016		
43432	27414467	Yoeun S., Sukhanov A., Han O.	Separation of enzymatic functions and variation of spin state of rice allene oxide synthase-1 by mutation of Phe-92 and Pro-430.	Bioorg. Chem.	68	9-14	2016		
43433	27457210	Segami S., Yamamoto T., Oki K., Noda T., Kanamori H., Sasaki H., Mori S., Ashikari M., Kitano H., Katayose Y., Iwasaki Y., Miura K.	Detection of Novel QTLs Regulating grain size.in Extra-Large Grain Rice (Oryza sativa L.) Lines.	Rice (N Y)	9(1)	34	2016		
43434	27414645	Kazama T., Toriyama K.	Whole Mitochondrial Genome Sequencing and Re-Examination of a Cytoplasmic male sterility-Associated Gene in Boro-Taichung-Type Cytoplasmic Male Sterile Rice.	PLoS ONE	11(7)	e0159379	2016		
43435	27432349	Pabuayon I.M., Yamamoto N., Trinidad J.L., Longkumer T., Raorane M.L., Kohli A.	Reference genes for accurate gene expression analyses across different tissues, developmental stages and genotypes in rice for drought tolerance.	Rice (N Y)	9(1)	32	2016		
43436	27448032	Li Z., Tang L., Qiu J., Zhang W., Wang Y., Tong X., Wei X., Hou Y., Zhang J.	Serine carboxypeptidase 46 Regulates Grain Filling and Seed Germination in Rice (Oryza sativa L.).	PLoS ONE	11(7)	e0159737	2016		
43437	27466812	Zhu G., Li G., Wang D., Yuan S., Wang F.	Changes in the Lodging-Related Traits along with Rice Genetic Improvement in China.	PLoS ONE	11(7)	e0160104	2016		
43438	27381440	Zhang C., Ding Z., Wu K., Yang L., Li Y., Yang Z., Shi S., Liu X., Zhao S., Yang Z., Wang Y., Zheng L., Wei J., Du Z., Zhang A., Miao H., Li Y., Wu Z., Wu J.	Suppression of Jasmonic Acid-Mediated Defense by Viral-Inducible MicroRNA319 Facilitates Virus Infection in Rice.	Mol Plant			2016		
43439	27478151	Taniguchi M., Ochiai A., Takahashi K., Nakamichi S.I., Nomoto T., Saitoh E., Kato T., Tanaka T.	Antimicrobial activity against Porphyromonas gingivalis and mechanism of action of the cationic octadecapeptide AmyI-1-18 and its amino acid-substituted analogs.	J. Biosci. Bioeng.			2016		
43440	27387148	Huang X.Y., Deng F., Yamaji N., Pinson S.R., Fujii-Kashino M., Danku J., Douglas A., Guerinot M.L., Salt D.E., Ma J.F.	A heavy metal P-type ATPase OsHMA4 prevents copper accumulation in rice grain.	Nat Commun	7	12138	2016		
43441	27471161	Tyagi C., Singh A., Singh I.K.	Mechanistic insights into mode of action of rice allene oxide synthase on hydroxyperoxides: An intermediate step in herbivory-induced jasmonate pathway.	Comput Biol Chem	64	227-236	2016		
43442	27441398	Zhang Q., Zheng T., Hoang L., Wang C., Nafisah, Joseph C., Zhang W., Xu J., Li Z.	Joint Mapping and Allele Mining of the rolled leaf Trait in Rice (Oryza sativa L.).	PLoS ONE	11(7)	e0158246	2016		
43443	27298579	Chunthaburee S., Dongsansuk A., Sanitchon J., Pattanagul W., Theerakulpisut P.	Physiological and biochemical parameters for evaluation and clustering of rice cultivars differing in salt tolerance at seedling stage.	Saudi J Biol Sci	23(4)	467-77	2016		
43444	27448993	Singh P., Sinha A.K.	Differential expression of Mitogen Activated Protein Kinase (MAPK) cascade components post submergence in Oryza sativa ssp indica cv Pusa Basmati 1.	Plant Signal Behav		0	2016		
43445	27420056	Han B., Fu L., Zhang D., He X., Chen Q., Peng M., Zhang J.	Interspecies and Intraspecies Analysis of Trehalose Contents and the Biosynthesis Pathway Gene Family Reveals Crucial Roles of Trehalose in Osmotic-Stress Tolerance in Cassava.	Int J Mol Sci	17(7)		2016		
43446	27472897	Yuan M., Ke Y., Huang R., Ma L., Yang Z., Chu Z., Xiao J., Li X., Wang S.	A host basal transcription factor is a key component for infection of rice by TALE-carrying bacteria.	Elife	5		2016		
43447	27471511	Wu L., Yuan S., Huang L., Sun F., Zhu G., Li G., Fahad S., Peng S., Wang F.	Physiological Mechanisms Underlying the High-grain yield and High-Nitrogen Use Efficiency of Elite Rice Varieties under a Low Rate of Nitrogen Application in China.	Front Plant Sci	7	1024	2016		
43448	27423220	Hao D., Yang S., Huang Y., Su Y.	Identification of structural elements involved in fine-tuning of the transport activity of the rice ammonium transporter OsAMT1;3.	Plant Physiol. Biochem.	108	99-108	2016		
43449	27374612	Lin R., He L., He J., Qin P., Wang Y., Deng Q., Yang X., Li S., Wang S., Wang W., Liu H., Li P., Zheng A.	Comprehensive analysis of microRNA-Seq and target mRNAs of rice sheath blight pathogen provides new insights into pathogenic regulatory mechanisms.	DNA Res.			2016		
43450	27453497	Saha C., Mukherjee G., Agarwal-Banka P., Seal A.	A consortium of non-rhizobial endophytic microbes from Typha angustifolia functions as probiotic in rice and improves nitrogen metabolism.	Plant Biol (Stuttg)			2016		
43451	27415007	Ramakrishnan M., Antony Ceasar S., Duraipandiyan V., Vinod K.K., Kalpana K., Al-Dhabi NA., Ignacimuthu S.	Tracing QTLs for Leaf Blast Resistance and Agronomic Performance of Finger Millet (Eleusine coracana (L.) Gaertn.) Genotypes through Association Mapping and in silico Comparative Genomics Analyses.	PLoS ONE	11(7)	e0159264	2016		
43452	27416927	Ouyang X., Hong X., Zhao X., Zhang W., He X., Ma W., Teng W., Tong Y.	Knock out of the PHOSPHATE 2 Gene TaPHO2-A1 Improves phosphorus uptake and grain yield under Low Phosphorus Conditions in Common Wheat.	Sci Rep	6	29850	2016		
43453	27478742	Ding X., Chen Q., Bao C., Ai A., Zhou Y., Li S., Xie H., Zhu Y., Cai Y., Peng X.	Expression of a mitochondrial gene orfH79 from CMS-Honglian rice inhibits Escherichia coli growth via deficient oxygen consumption.	Springerplus	5(1)	1125	2016		
43454	27459060	Clouse S.D.	Brassinosteroid/Abscisic Acid Antagonism in Balancing Growth and Stress.	Dev. Cell	38(2)	118-20	2016		
43455	27373308	Rashid M.A., Zhao Y., Zhang H., Li J., Li Z.	Nucleotide diversity, natural variation, and evolution of Flexible culm-1 and Strong culm-2 lodging resistance genes in rice.	Genome	59(7)	473-83	2016		
43456	27411911	Dey A., Samanta M.K., Gayen S., Maiti M.K.	The sucrose non-fermenting 1-related kinase 2 gene SAPK9 improves drought tolerance and grain yield in rice by modulating cellular osmotic potential, stomatal closure and stress-responsive gene expression.	BMC Plant Biol.	16(1)	158	2016		
43457	27430511	Aghazadeh R., Zamani M., Motallebi M., Moradyar M., Moghadassi Jahromi Z.	Co-transformation of canola by chimeric chitinase and tlp genes towards improving resistance to Sclerotinia sclerotiorum.	World J. Microbiol. Biotechnol.	32(9)	144	2016		
43458	27369289	Zhang W., Wu L., Wu X., Ding Y., Li G., Li J., Weng F., Liu Z., Tang S., Ding C., Wang S.	Lodging Resistance of Japonica Rice (Oryza Sativa L.): Morphological and Anatomical Traits due to top-Dressing Nitrogen Application Rates.	Rice (N Y)	9(1)	31	2016		
43459	27447945	Liu L., Zheng C., Kuang B., Wei L., Yan L., Wang T.	receptor-like kinase RUPO Interacts with Potassium Transporters to Regulate pollen Tube Growth and Integrity in Rice.	PLoS Genet.	12(7)	e1006085	2016	HAK19,LCS,HAK20,RUPO	OsHAK19,OsHAK1, HAK1,OsHAK20,OsRLCK193, RLCK193, OsCrRLK1L13, CrRLK1L13, OsMRLK40, MRLK40, FLR9, OsFLR9
43460	27414796	Li Z., An X.K., Liu Y.D., Hou M.L.	Transcriptomic and Expression Analysis of the Salivary Glands in White-Backed Planthoppers, Sogatella furcifera.	PLoS ONE	11(7)	e0159393	2016		
43461	27440503	Li B., Zhang Y., Mohammadi S.A., Huai D., Zhou Y., Kliebenstein D.J.	An Integrative Genetic Study of Rice Metabolism, Growth and Stochastic Variation Reveals Potential C/N Partitioning Loci.	Sci Rep	6	30143	2016		
43462	27464824	Song L., Wang R., Zhang L., Wang Y., Yao S.	CRR1 encoding callose synthase functions in ovary expansion by affecting vascular cell patterning in rice.	Plant J.			2016	GSL8	OsGSL8, OsGSC, GSC, CRR1, OsCRR1, CalS9, OsCalS9
43463	27444416	Meng J., Mabubu J.I., Han Y., He Y., Zhao J., Hua H., Feng Y., Wu G.	No impact of transgenic cry1C rice on the rove beetle Paederus fuscipes, a generalist predator of brown planthopper Nilaparvata lugens.	Sci Rep	6	30303	2016		
43464	27434423	Wan Y., Yu Y., Wang Q., Qiao Y., Li H.	Cadmium uptake dynamics and translocation in rice seedling: Influence of different forms of selenium.	Ecotoxicol. Environ. Saf.	133	127-134	2016		
43465	27380139	Wu Y., Huang M., Tao X., Guo T., Chen Z., Xiao W.	Quantitative trait loci identification and meta-analysis for rice panicle-related traits.	Mol. Genet. Genomics	291(5)	1927-40	2016		
43466	27412613	Roy S., Marndi B.C., Mawkhlieng B., Banerjee A., Yadav R.M., Misra A.K., Bansal K.C.	Genetic diversity and structure in hill rice (Oryza sativa L.) landraces from the North-Eastern Himalayas of India.	BMC Genet.	17(1)	107	2016		
43467	27269510	Tayi L., Maku R., Patel H.K., Sonti R.V.	Action of Multiple Cell Wall-Degrading Enzymes Is Required for Elicitation of Innate Immune Responses During Xanthomonas oryzae pv. oryzae Infection in Rice.	Mol. Plant Microbe Interact.	29(8)	599-608	2016		
43468	27454201	Ishikawa T., Ito Y., Kawai-Yamada M.	Molecular characterization and targeted quantitative profiling of the sphingolipidome in rice.	Plant J.			2016		
43469	27454702	Mgonja E.M., Balimponya E.G., Kang H., Bellizzi M., Park C.H., Li Y., Mabagala R., Sneller C., Correll J., Opiyo S., Talbot N.J., Mitchell T., Wang G.L.	Genome-wide Association Mapping of Rice Resistance Genes Against Magnaporthe oryzae Isolates from Four African Countries.	Phytopathology		PHYTO01160028R	2016		
43470	27525873	Zeng Y.W., Sun D., Du J., Pu X.Y., Yang S.M., Yang X.M., Yang T., Yang J.Z.	Identification of QTLs for resistant starch and total alkaloid content in brown and polished rice.	Genet. Mol. Res.	15(3)		2016		
43471	27458473	Nieves-Cordones M., Mart?nez V., Benito B., Rubio F.	Comparison between Arabidopsis and Rice for Main Pathways of K(+) and Na(+) Uptake by Roots.	Front Plant Sci	7	992	2016		
43472	27553634	Xiong W., Dooner H.K., Du C.	Rolling-circle amplification of centromeric Helitrons in plant genomes.	Plant J.			2016		
43473	27540108	Gu L., Wu Y., Jiang M., Si W., Zhang X., Tian D., Yang S.	Dissimilar manifestation of heterosis under nutrient-deficient and nutrient-sufficient condition.	Plant Physiol.			2016		
43474	27494320	Pradhan S.K., Barik S.R., Sahoo A., Mohapatra S., Nayak D.K., Mahender A., Meher J., Anandan A., Pandit E.	Population Structure, Genetic Diversity and Molecular Marker-Trait Association Analysis for High Temperature Stress Tolerance in Rice.	PLoS ONE	11(8)	e0160027	2016		
43475	27575481	Zhang Y., Liu X.H., Zhan Y.Z., Zhang L.Y., Li Z.M., Li Y.H., Zhang X., Wang B.L.	Synthesis and biological activities of novel 5-substituted-1,3,4-oxadiazole Mannich bases and bis-Mannich bases as ketol-acid reductoisomerase inhibitors.	Bioorg. Med. Chem. Lett.			2016		
43476	27492010	Islam M.R., Alam M.S., Khan A.I., Hossain I., Adam L.R., Daayf F.	Analyses of genetic diversity of bacterial blight pathogen, Xanthomonas oryzae pv. oryzae using IS1112 in Bangladesh.	C. R. Biol.			2016		
43477	27515683	Qi W., Zhu T., Tian Z., Li C., Zhang W., Song R.	High-efficiency CRISPR/Cas9 multiplex gene editing using the glycine tRNA-processing system-based strategy in maize.	BMC Biotechnol.	16(1)	58	2016		
43478	27539357	Hirota T., Tsuboi H., Iizuka-Koga M., Takahashi H., Asashima H., Yokosawa M., Kondo Y., Ohta M., Wakasa Y., Matsumoto I., Takaiwa F., Sumida T.	Suppression of glucose-6-phosphate-isomerase induced arthritis by oral administration of transgenic rice seeds expressing altered peptide ligands of glucose-6-phosphate-isomerase.	Mod Rheumatol		1-23	2016		
43479	27522959	Kubo F.C., Yasui Y., Kumamaru T., Sato Y., Hirano H.Y.	Genetic analysis of rice mutants responsible for narrow leaf phenotype and reduced vein number.	Genes Genet. Syst.			2016		
43480	27525914	Miao L.X., Jiang M., Zhang Y.C., Yang X.F., Zhang H.Q., Zhang Z.F., Wang Y.Z., Jiang G.H.	Genomic identification, phylogeny, and expression analysis of MLO genes involved in susceptibility to powdery mildew in Fragaria vesca.	Genet. Mol. Res.	15(3)		2016		
43481	27468303	Xia H., Zhang H., Wang W., Yang X., Wang F., Su J., Xia H., Xu K., Cai X., Lu B.R.	Ambient insect pressure and recipient genotypes determine fecundity of transgenic crop-weed rice hybrid progeny: Implications for environmental biosafety assessment.	Evol Appl	9(7)	847-56	2016		
43482	27493141	Chen Q., Liang W., Qian F., Qian B., Cao J., Zhang D., Xu Y., Tang L.	Rice-produced MSP142 of Plasmodium falciparum elicits antibodies that inhibit parasite growth in vitro.	Parasite Immunol.			2016		
43483	27565205	Fukuda M., Kawagoe Y., Murakami T., Washida H., Sugino A., Nagamine A., Okita T.W., Ogawa M., Kumamaru T.	The Dual Roles of the Golgi Transport 1 (GOT1B): RNA Localization to the Cortical Endoplasmic Reticulum and the Export of Proglutelin and alpha-globulin from the Cortical-ER to the Golgi.	Plant Cell Physiol.			2016		
43484	27522958	Sugiyama S.H., Tanaka W., Hirano H.Y.	Polar patterning of the spikelet is disrupted in the two opposite lemma mutant in rice.	Genes Genet. Syst.			2016		
43485	27538481	Cui J., Chen B., Wang H., Han Y., Chen X., Zhang W.	Glucosidase II beta-subunit, a novel substrate for caspase-3-like activity in rice, plays as a molecular switch between autophagy and programmed cell death.	Sci Rep	6	31764	2016	_,FKBP62A,GAS2,ALDH6B2     ,HSP90,_,BZIP50	HSP40,OsFKBP62a, FKBP62a, OsFKBP64, FKBP64,OsGAS2,OsALDH6B2  ,OsHsp90, rHSP90, OsHSP90, GRP94, OsGRP94,RMtATPb, atpB, AtpB ,OsbZIP60, bZIP50, OsbZIP50, OsbZIP74, bZIP74, OsbZIP50-S
43486	27530495	Li H., Liu Y., Chen Y., Wang S., Wang M., Xie T., Wang G.	Biochar amendment immobilizes lead in rice paddy soils and reduces its phytoavailability.	Sci Rep	6	31616	2016		
43487	27544770	Xu F., Bao J., He Q., Park Y.J.	Genome-wide association study of eating and cooking qualities in different subpopulations of rice (Oryza sativa L.).	BMC Genomics	17	663	2016		
43488	27500558	Lee K., Zawadzka A., Czarnocki Z., Reiter R.J., Back K.	Molecular cloning of melatonin 3-hydroxylase and its production of cyclic 3-hydroxymelatonin in rice (Oryza sativa).	J. Pineal Res.			2016		
43489	27498808	Igarashi K., Kazama T., Toriyama K.	A Gene Encoding Pentatricopeptide Repeat Protein Partially Restores Fertility in RT98-Type Cytoplasmic Male-Sterile Rice.	Plant Cell Physiol.			2016		
43490	27463793	Yan S., Zhang H., Huang Y., Tan J., Wang P., Wang Y., Hou H., Huang J., Li L.	Single-wall and multi-wall carbon nanotubes promote rice root growth by eliciting the similar molecular pathways and epigenetic regulation.	IET Nanobiotechnol	10(4)	222-9	2016		
43491	27486025	Mishra S., Singh B., Misra P., Rai V., Singh N.K.	Haplotype distribution and association of candidate genes with salt tolerance in Indian wild rice germplasm.	Plant Cell Rep.			2016		
43492	27519315	Morita R., Inoue K., Ikeda K.I., Hatanaka T., Misoo S., Fukayama H.	starch content in leaf sheath Controlled by CO2-Responsive CCT protein is a Potential Determinant of Photosynthetic Capacity in Rice.	Plant Cell Physiol.			2016		
43493	27479744	de Saint Germain A., Clav? G., Badet-Denisot MA., Pillot J.P., Cornu D., Le Caer JP., Burger M., Pelissier F., Retailleau P., Turnbull C., Bonhomme S., Chory J., Rameau C., Boyer F.D.	An histidine covalent receptor and butenolide complex mediates strigolactone perception.	Nat. Chem. Biol.			2016		
43494	27535768	Gimhani D.R., Gregorio G.B., Kottearachchi N.S., Samarasinghe W.L.	SNP-based discovery of salinity-tolerant QTLs in a bi-parental population of rice (Oryza sativa).	Mol. Genet. Genomics			2016		
43495	27494628	Li B., Zhang Y., Li J., Yao G., Pan H., Hu G., Chen C., Zhang H., Li Z.	Fine Mapping of Two Additive Effect Genes for Awn Development in Rice (Oryza sativa L.).	PLoS ONE	11(8)	e0160792	2016	AN1,AN3-1	An-1, OsbHLH093, RAE1, An-1/RAE1, RAE1/An-1, OsRAE1, OsAn-1, OgRAE1,An3-1
43496	27535791	Zhou S., Liu X., Zhou C., Zhou Q., Zhao Y., Li G., Zhou D.X.	Cooperation between the H3K27me3 chromatin marker and non-CG methylation in epigenetic regulation.	Plant Physiol.			2016		
43497	27515776	Mati? S., Bagnaresi P., Biselli C., Orru' L., Amaral Carneiro G., Siciliano I., Val? G., Gullino M.L., Spadaro D.	Comparative transcriptome profiling of resistant and susceptible rice genotypes in response to the seedborne pathogen Fusarium fujikuroi.	BMC Genomics	17(1)	608	2016		
43498	27558448	Fang Y., Wang X., Wang L., Pan X., Xiao J., Wang X.E., Wu Y., Zhang W.	Functional characterization of open chromatin in bidirectional promoters of rice.	Sci Rep	6	32088	2016		
43499	27496332	Hu J., Chen G., Zhang H., Qian Q., Ding Y.	Comparative transcript profiling of alloplasmic male-sterile lines revealed altered gene expression related to pollen development in rice (Oryza sativa L.).	BMC Plant Biol.	16(1)	175	2016		
43500	27481351	Sethi S., Saini J.S., Mohan A., Brar N.K., Verma S., Sarao N.K., Gill K.S.	Comparative and evolutionary analysis of alpha-amylase gene across monocots and dicots.	Funct. Integr. Genomics			2016		
43501	27560036	Wang J., Yin Z., Tang W., Cai X., Gao C., Zhang H., Zheng X., Wang P., Zhang Z.	The thioredoxin MoTrx2 protein mediates ROS balance and controls pathogenicity as a target of the transcription factor MoAP1 in Magnaporthe oryzae.	Mol. Plant Pathol.			2016		
43502	27555853	Chen L., Yang X., Luo D., Yu W.	Efficient Production of a Bioactive Bevacizumab Monoclonal Antibody Using the 2A Self-cleavage Peptide in Transgenic Rice Callus.	Front Plant Sci	7	1156	2016		
43503	27549409	Faricelli M.E., Val?rik M., Dubcovsky J.	Erratum to: Control of flowering time and spike development in cereals: the earliness per se Eps-1 region in wheat, rice, and Brachypodium.	Funct. Integr. Genomics			2016		
43504	27508500	Yao N., Lee C.R., Semagn K., Sow M., Nwilene F., Kolade O., Bocco R., Oyetunji O., Mitchell-Olds T., Ndjiondjop M.N.	QTL Mapping in Three Rice Populations Uncovers Major Genomic Regions Associated with African Rice Gall Midge Resistance.	PLoS ONE	11(8)	e0160749	2016		
43505	27540387	Cui L.L., Lu Y.S., Li Y., Yang C., Peng X.X.	Overexpression of Glycolate Oxidase Confers Improved Photosynthesis under High Light and High Temperature in Rice.	Front Plant Sci	7	1165	2016		
43506	27554933	Kuang Q., Xu J., Wang K., Zhou S., Liu X.	Structure and Digestion of Hybrid Indica Rice Starch and Its Biosynthesis.	Int. J. Biol. Macromol.			2016		
43507	27467463	Liu J., Fu S., Yang L., Luan M., Zhao F., Luan S., Lan W.	Vacuolar SPX-MFS transporters are essential for phosphate adaptation in plants.	Plant Signal Behav	11(8)	e1213474	2016		
43508	27559341	Ding L., Li Y., Wang Y., Gao L., Wang M., Chaumont F., Shen Q., Guo S.	Root ABA Accumulation Enhances Rice Seedling drought tolerance under Ammonium Supply: Interaction with Aquaporins.	Front Plant Sci	7	1206	2016		
43509	27521428	Liu H., Nonomura K.I.	Histone H3 modifications are widely reprogrammed during male meiosis I in rice dependently on mel1 Argonaute protein.	J. Cell. Sci.			2016		
43510	27555860	Li B., Li Q., Mao X., Li A., Wang J., Chang X., Hao C., Zhang X., Jing R.	Two Novel AP2/EREBP transcription factor Genes TaPARG Have Pleiotropic Functions on Plant Architecture and Yield-Related Traits in Common Wheat.	Front Plant Sci	7	1191	2016		
43511	27565968	Chawla M., Verma V., Kapoor M., Kapoor S.	A novel application of periodic acid-Schiff (PAS) staining and fluorescence imaging for analysing tapetum and microspore development.	Histochem. Cell Biol.			2016		
43512	27531613	Li T., Yaokui L., Dan Z., Bigang M., Qiming L., Yuanyi H., Ye S., Yan P., Binran Z., Shitou X.	Characteristic and inheritance analysis of targeted mutagenesis mediated by genome editing in rice.	Yi Chuan	38(8)	746-55	2016		
43513	27574525	M?odzi?ska E., Zboi?ska M.	Phosphate Uptake and Allocation - A Closer Look at Arabidopsis thaliana L. and Oryza sativa L.	Front Plant Sci	7	1198	2016		
43514	27532545	Yasmin S., Zaka A., Imran A., Zahid M.A., Yousaf S., Rasul G., Arif M., Mirza M.S.	Plant Growth Promotion and Suppression of Bacterial Leaf Blight in Rice by Inoculated Bacteria.	PLoS ONE	11(8)	e0160688	2016		
43515	27536521	Sha Y., Wang Q., Li Y.	Suppression of Magnaporthe oryzae and interaction between Bacillus subtilis and rice plants in the control of rice blast.	Springerplus	5(1)	1238	2016		
43516	27498027	Zhang Z., Li X., Zhang C., Zou H., Wu Z.	Isolation, structural analysis, and expression characteristics of the maize nuclear factor Y gene families.	Biochem. Biophys. Res. Commun.	478(2)	752-8	2016		
43517	27493192	Chen L., Yu Y., Zhang X., Liu C., Ye C., Fan L.	PcircRNA_finder: a software for circRNA prediction in plants.	Bioinformatics			2016		
43518	27495313	Hinge V.R., Patil H.B., Nadaf A.B.	Aroma volatile analyses and 2AP characterization at various developmental stages in Basmati and Non-Basmati scented rice (Oryza sativa L.) cultivars.	Rice (N Y)	9(1)	38	2016		
43519	27551285	Ray S., Singh P.K., Gupta D.K., Mahato A.K., Sarkar C., Rathour R., Singh N.K., Sharma T.R.	Analysis of Magnaporthe oryzae Genome Reveals a Fungal Effector, Which Is Able to Induce Resistance Response in Transgenic Rice Line Containing Resistance Gene, Pi54.	Front Plant Sci	7	1140	2016		
43520	27559339	Zhai S., Xia X., He Z.	Carotenoids in Staple Cereals: Metabolism, Regulation, and Genetic Manipulation.	Front Plant Sci	7	1197	2016		
43521	27497661	Wu Y., Li J., Wang Y., Li X., Li Y., Zhu L., Li J., Wu G.	Development and application of a general plasmid reference material for GMO screening.	Plasmid			2016		
43522	27539013	Miraghazadeh A., Zhang P., Harding C., Hossain S., Hayden M., Wong D., Spielmeyer W., Chandler P.M.	The use of SNP hybridisation arrays and cytogenetics to characterise deletions of chromosome 4B in hexaploid wheat (Triticum aestivum L.).	Theor. Appl. Genet.			2016		
43523	27546334	Liu D., Zheng S., Wang X.	Lanthanum regulates the reactive oxygen species in the roots of rice seedlings.	Sci Rep	6	31860	2016		
43524	27528428	Park Y.R., Choi M.J., Park S.J., Kang H.	Three zinc-finger RNA-binding proteins in cabbage (Brassica rapa) play diverse roles in seed germination and plant growth under normal and abiotic stress conditions.	Physiol Plant			2016		
43525	27426698	Mou R.X., Cao Z.Y., Lin X.Y., Wu L., Cao Z.Z., Zhu Z.W., Chen M.X.	Characterization of the phytochelatins and their derivatives in rice exposed to cadmium based on high-performance liquid chromatography coupled with data-dependent hybrid linear ion trap orbitrap mass spectrometry.	Rapid Commun. Mass Spectrom.	30(16)	1891-900	2016		
43526	27555544	Yokosho K., Yamaji N., Ma J.F.	OsFRDL1 expressed in nodes is required for distribution of iron to grains in rice.	J. Exp. Bot.			2016		
43527	27567632	Bai C., Berman J., Farre G., Capell T., Sandmann G., Christou P., Zhu C.	Reconstruction of the astaxanthin biosynthesis pathway in rice endosperm reveals a metabolic bottleneck at the level of endogenous beta-carotene hydroxylase activity.	Transgenic Res.			2016		
43528	27513992	Bahuguna R.N., Solis C.A., Shi W., Jagadish K.S.	Post-flowering night respiration and altered sink activity account for high night temperature-induced grain yield and quality loss in rice (Oryza sativa).	Physiol Plant			2016		
43529	27566485	Kim M.Y., Kim B.Y., Oh S.M., Reljic R., Jang Y.S., Yang M.S.	Oral immunisation of mice with transgenic rice calli expressing cholera toxin B subunit fused to consensus dengue cEDIII antigen induces antibodies to all four dengue serotypes.	Plant Mol. Biol.			2016		
43530	27507407	Qiao W., Qi L., Cheng Z., Su L., Li J., Sun Y., Ren J., Zheng X., Yang Q.	Development and characterization of chromosome segment substitution lines derived from Oryza rufipogon in the genetic background of O. sativa spp. indica cultivar 9311.	BMC Genomics	17	580	2016		
43531	27543605	Liu C., Zhu H., Xing Y., Tan J., Chen X., Zhang J., Peng H., Xie Q., Zhang Z.	albino leaf 2 is involved in the splicing of chloroplast group I and II introns in rice.	J. Exp. Bot.			2016		
43532	27545518	Ma L., Sang X., Zhang T., Yu Z., Li Y., Zhao F., Wang Z., Wang Y., Yu P., Wang N., Zhang C., Ling Y., Yang Z., He G.	ABNORMAL VASCULAR BUNDLES regulates cell proliferation and procambium cell establishment during aerial organ development in rice.	New Phytol.			2016		
43533	27501838	Chung P.J., Jung H., Jeong D.H., Ha S.H., Choi Y.D., Kim J.K.	Transcriptome profiling of drought responsive noncoding RNAs and their target genes in rice.	BMC Genomics	17	563	2016		
43534	27555861	Abhilash Kumar V., Balachiranjeevi C.H., Bhaskar Naik S., Rambabu R., Rekha G., Harika G., Hajira S.K., Pranathi K., Anila M., Kousik M., Vijay Kumar S., Yugander A., Aruna J., Dilip Kumar T., Vijaya Sudhakara Rao K., Hari Prasad AS., Madhav M.S., Laha G.S., Balachandran S.M., Prasad M.S., Viraktamath B.C., Ravindra Babu V., Sundaram R.M.	Development of Gene-Pyramid Lines of the Elite Restorer Line, RPHR-1005 Possessing Durable Bacterial Blight and Blast Resistance.	Front Plant Sci	7	1195	2016		
43535	27544640	Damaris R.N., Li M., Liu Y., Chen X., Murage H., Yang P.	A proteomic analysis of salt stress response in seedlings of two African rice cultivars.	Biochim. Biophys. Acta	1864(11)	1570-1578	2016		
43536	27228993	Tyagi W., Rai M.	Root transcriptomes of two acidic soil adapted Indica rice genotypes suggest diverse and complex mechanism of low phosphorus tolerance.	Protoplasma			2016		
43537	27194164	He Y., Zhan F., Li Y., Xu W., Zu Y., Yue M.	Effect of enhanced UV-B radiation on methane emission in a paddy field and rice root exudation of low-molecular-weight organic acids.	Photochem. Photobiol. Sci.	15(6)	735-43	2016		
43538	27193349	Ji Y., Zhou Y., Ma C., Feng Y., Hao Y., Rui Y., Wu W., Gui X., Le V.N., Han Y., Wang Y., Xing B., Liu L., Cao W.	Jointed toxicity of TiO2 NPs and Cd to rice seedlings: NPs alleviated Cd toxicity and Cd promoted NPs uptake.	Plant Physiol. Biochem.			2016		
43539	27192712	Henry A., Wehler R., Grondin A., Franke R., Quintana M.	Environmental and physiological effects on grouping of drought-tolerant and susceptible rice varieties related to rice (Oryza sativa) root hydraulics under drought.	Ann. Bot.			2016		
43540	27174682	Kumagai E., Homma K., Kuroda E., Shimono H.	Finlay-Wilkinson's regression coefficient as a pre-screening criterion for yield responsiveness to elevated atmospheric CO2 concentration in crops.	Physiol Plant			2016		
43541	27185548	Sun Z., Liu Z., Zhou W., Jin H., Liu H., Zhou A., Zhang A., Wang M.Q.	Temporal interactions of plant - insect - predator after infection of bacterial pathogen on rice plants.	Sci Rep	6	26043	2016		
43542	27288224	Danila F.R., Quick W.P., White R.G., Furbank R.T., von Caemmerer S.	The Metabolite Pathway between bundle sheath and Mesophyll: Quantification of Plasmodesmata in Leaves of C3 and C4 Monocots.	Plant Cell	28(6)	1461-71	2016		
43543	27375646	Edzesi W.M., Dang X., Liang L., Liu E., Zaid I.U., Hong D.	Genetic Diversity and Elite Allele Mining for Grain Traits in Rice (Oryza sativa L.) by Association Mapping.	Front Plant Sci	7	787	2016		
43544	27350029	Yang J., Gong W., Shi S., Du L., Sun J., Song S., Chen B., Zhang Z.	Analyzing the performance of fluorescence parameters in the monitoring of leaf nitrogen content of paddy rice.	Sci Rep	6	28787	2016		
43545	27311455	Yu R., Yan W., Liang M., Dai X., Chen H., Sun Y., Deng X.W., Chen X., He H., Chen L.	Exploring the genetic characteristics of 93-11 and Nipponbare recombination inbred lines based on the GoldenGate SNP assay.	Sci China Life Sci	59(7)	700-8	2016		
43546	27468828	do Amaral MN., Arge L.W., Benitez L.C., Danielowski R., Silveira S.F., Farias D.D., de Oliveira AC., da Maia LC., Braga E.J.	Comparative transcriptomics of rice plants under cold, iron, and salt stresses.	Funct. Integr. Genomics			2016		
43547	27406081	Zhou L., Liu S., Wu W., Chen D., Zhan X., Zhu A., Zhang Y., Cheng S., Cao L., Lou X., Xu H.	Dissection of genetic architecture of rice plant height and heading date by multiple-strategy-based association studies.	Sci Rep	6	29718	2016		
43548	27385201	Chern M., Xu Q., Bart R.S., Bai W., Ruan D., Sze-To WH., Canlas P.E., Jain R., Chen X., Ronald P.C.	Correction: A Genetic Screen Identifies a Requirement for Cysteine-Rich-Receptor-Like Kinases in Rice NH1 (OsNPR1)-Mediated Immunity.	PLoS Genet.	12(7)	e1006182	2016		
43549	27448955	Wang J., Lv M., Islam F., Gill R.A., Yang C., Ali B., Yan G., Zhou W.	Salicylic acid mediates antioxidant defense system and ABA pathway related gene expression in Oryza sativa against quinclorac toxicity.	Ecotoxicol. Environ. Saf.	133	146-156	2016		
43550	27516766	Hussain S., Yin H., Peng S., Khan F.A., Khan F., Sameeullah M., Hussain H.A., Huang J., Cui K., Nie L.	Comparative Transcriptional Profiling of Primed and Non-primed Rice Seedlings under Submergence Stress.	Front Plant Sci	7	1125	2016		
43551	27453463	Zhou L., Liu Z., Liu Y., Kong D., Li T., Yu S., Mei H., Xu X., Liu H., Chen L., Luo L.	A novel gene OsAHL1 improves both drought avoidance and drought tolerance in rice.	Sci Rep	6	30264	2016		
43552	27388982	Brizio P., Benedetto A., Squadrone S., Curcio A., Pellegrino M., Ferrero M., Abete M.C.	Heavy metals and essential elements in Italian cereals.	Food Addit Contam Part B Surveill		1-7	2016		
43553	27381441	Ning Y., Wang R., Shi X., Zhou X., Wang G.L.	A Layered Defense Strategy Mediated by Rice E3?Ubiquitin Ligases against Diverse Pathogens.	Mol Plant	9(8)	1096-8	2016		
43554	27296957	Wang W., Zhai Y., Cao L., Tan H., Zhang R.	Endophytic bacterial and fungal microbiota in sprouts, roots and stems of rice (Oryza sativa L.).	Microbiol. Res.	188-189	1-8			
43555	27498978	Ghoochani O.M., Ghanian M., Baradaran M., Azadi H.	Multi Stakeholders' Attitudes toward Bt rice in Southwest, Iran: Application of TPB and Multi Attribute Models.	Integr Psychol Behav Sci			2016		
43556	27319052	Ali K., Rai R.D., Tyagi A.	Expression analysis of bZIP transcription factor encoding genes in response to water deficit stress in rice.	Indian J. Exp. Biol.	54(5)	332-7	2016		
43557	27228161	Biscarini F., Cozzi P., Casella L., Riccardi P., Vattari A., Orasen G., Perrini R., Tacconi G., Tondelli A., Biselli C., Cattivelli L., Spindel J., McCouch S., Abbruscato P., Val? G., Piffanelli P., Greco R.	Genome-Wide Association Study for Traits Related to Plant and Grain Morphology, and Root Architecture in Temperate Rice Accessions.	PLoS ONE	11(5)	e0155425	2016		
43558	27193099	Passricha N., Saifi S., Ansari M.W., Tuteja N.	Prediction and validation of cis-regulatory elements in 5' upstream regulatory regions of Lectin receptor-like kinase gene family in rice.	Protoplasma			2016		
43559	27192711	Zhu X.F., Zhu C.Q., Zhao X.S., Zheng S.J., Shen R.F.	Ethylene is involved in root phosphorus remobilization in rice (Oryza sativa) by regulating cell-wall pectin and enhancing phosphate translocation to shoots.	Ann. Bot.			2016		
43560	27198135	Feng Y., Lu Q., Zhai R., Zhang M., Xu Q., Yang Y., Wang S., Yuan X., Yu H., Wang Y., Wei X.	Genome wide association mapping for grain shape traits in indica rice.	Planta			2016		
43561	27294384	Vejchasarn P., Lynch J.P., Brown K.M.	Genetic Variability in Phosphorus Responses of Rice Root Phenotypes.	Rice (N Y)	9(1)	29	2016		
43562	27324699	Zheng Y., Crawford G.W., Jiang L., Chen X.	Rice Domestication Revealed by Reduced Shattering of Archaeological rice from the Lower Yangtze valley.	Sci Rep	6	28136	2016		
43563	27300326	Hu J., Xiao C., He Y.	Recent progress on the genetics and molecular breeding of brown planthopper resistance in rice.	Rice (N Y)	9(1)	30	2016		
43564	27246799	Guo J., Xu X., Li W., Zhu W., Zhu H., Liu Z., Luan X., Dai Z., Liu G., Zhang Z., Zeng R., Tang G., Fu X., Wang S., Zhang G.	Overcoming inter-subspecific hybrid sterility in rice by developing indica-compatible japonica lines.	Sci Rep	6	26878	2016		
43565	27389871	Marulanda J.J., Mi X., Melchinger A.E., Xu J.L., W?rschum T., Longin C.F.	Optimum breeding strategies using genomic selection for hybrid breeding in wheat, maize, rye, barley, rice and triticale.	Theor. Appl. Genet.			2016		
43566	27519313	Gao L., Liu M., Wang M., Shen Q., Guo S.	Enhanced Salt Tolerance under Nitrate Nutrition is Associated with Apoplast Na+ Content in Canola (Brassica. napus L.) and Rice (Oryza sativa L.) Plants.	Plant Cell Physiol.			2016		
43567	27568375	Zhang H.Y., Luo M., Johnson S.D., Zhu X.W., Liu L., Huang F., Liu Y.T., Xu P.Z., Wu X.J.	Parental Genome Imbalance Causes Post-Zygotic Seed Lethality and Deregulates Imprinting in Rice.	Rice (N Y)	9(1)	43	2016		
43568	27542721	Bedre R., Mangu V.R., Srivastava S., Sanchez L.E., Baisakh N.	Transcriptome analysis of smooth cordgrass (Spartina alterniflora Loisel), a monocot halophyte, reveals candidate genes involved in its adaptation to salinity.	BMC Genomics	17(1)	657	2016		
43569	27563306	Chen C., E Z., Lin H.X.	Evolution and Molecular Control of hybrid incompatibility in Plants.	Front Plant Sci	7	1208	2016		
43570	27524161	Meng D., Walsh M., Fricke W.	Rapid changes in root hydraulic conductivity and aquaporin expression in rice (Oryza sativa L.) in response to shoot removal - xylem tension as a possible signal.	Ann. Bot.			2016		
43571	27497079	Kumar A., Dixit G., Singh A.P., Dwivedi S., Srivastava S., Mishra K., Tripathi R.D.	Selenate mitigates arsenite toxicity in rice (Oryza sativa L.) by reducing arsenic uptake and ameliorates amino acid content and thiol metabolism.	Ecotoxicol. Environ. Saf.	133	350-359	2016		
43572	27573488	Nakamura S., Cui J., Zhang X., Yang F., Xu X., Sheng H., Ohtsubo K.	Comparison of eating quality and physicochemical properties between Japanese and Chinese rice cultivars.	Biosci. Biotechnol. Biochem.		1-13	2016		
43573	16040665	Yu F., Park S., Steven R Rodermel	Functional redundancy of AtFtsH metalloproteases in thylakoid membrane complexes.	Plant Physiol.	138(4)	1957-66	2005	FTSH1,FTSH2,FTSH6,FTSH5,FTSH4,FTSH7,FTSH9,FTSH8,FTSH3	OsFtsH1, FtsH1,OsFtsH2, FtsH2,OsFtsH6, FtsH6,OsFtsH5, FtsH5,OsFtsH4, FtsH4,OsFtsH7, FtsH7,OsFtsH9, FtsH9, OsFtsH2, FtsH2,OsFtsH8, FtsH8,OsFtsH3, FtsH3
43574	20454772	Philippe R., Courtois B., Kenneth L McNally, Mournet P., Redouane El-Malki, Marie Christine Le Paslier, Fabre D., Billot C., Brunel D., Jean-Christophe Glaszmann, This D.	Structure, allelic diversity and selection of Asr genes, candidate for drought tolerance, in Oryza sativa L. and wild relatives.	Theor. Appl. Genet.	121(4)	769-87	2010	RBLS2,ASR4,ASR4,ASR5,ASR3,ASR2	ASR1, OsAsr1, OsASR3, ASR3, Asr3, OsRBLS2,OsASR2, OsASR4, Asr4, ASR2, OsASR6, ASR6,Asr4, OsASR6, OsASR2, Asr2, OsASR1, ASR1,OsASR5, Asr5, Asr1, OsASR1, OsASR2, ASR2,Asr3, OsASR5, OsASR1, Asr1,OsAsr2, OsASR4, ASR4, OsASR6, ASR6
43576	0	Takahiro GOTO, Tadayuki MATSUMOTO, Naruto FURUYA, Kenichi TSUCHIYA, Atsushi YOSHIMURA	Mapping of Bacterial Blight Resistance Gene Xa11 on Rice Chromosome 3	JARQ	43(3)	221-225	2009	XA11	Xa11(Xa pt), Xa11, Xapt
43577	19306571	Zhao Z., Fu Y., Yang K., Zhang Y., Yan Y., Fang R., Sun Z., Chen X.	[Cloning and function analysis of the rice small GTP-binding protein gene OsPra2].	Sheng Wu Gong Cheng Xue Bao	24(12)	2027-33	2008	_	OsRab11F1, OsPRA2, PRA2, OsPra2 
43578	20213442	Tamura W., Hidaka Y., Tabuchi M., Kojima S., Hayakawa T., SATO T., Obara M., Kojima M., Sakakibara H., Yamaya T.	Reverse genetics approach to characterize a function of NADH-glutamate synthase1 in rice plants.	Amino Acids	39(4)	1003-12	2010	GLT2,GLT1,ABC1	OsGLT2, OsNADH-GOGAT2, NADH-GOGAT2, OsGOGAT2, GOGAT2, OsGLU2, GLU2,OsGLT1, OsNADH-GOGAT1, NADH-GOGAT1, OsNADH-GOGAT, GOGAT, NADH-GOGAT, OsGOGAT1, GOGAT1, OsGLU1,OsABC1, SPL32, OsSPL32, OsGLU, OsFd-GOGAT, Fd-GOGAT, ABC1/ OsFd-GOGAT 
43579	27986805	Chen H., Tang Y., Liu J., Tan L., Jiang J., Wang M., Zhu Z., Sun X., Sun C.	Emergence of a Novel Chimeric Gene Underlying grain number in Rice.	Genetics			2016	_	GN2, GN2.1, GN2.2
43580	27965387	Fan Y., Yang J., Mathioni S.M., Yu J., Shen J., Yang X., Wang L., Zhang Q., Cai Z., Xu C., Li X., Xiao J., Meyers B.C., Zhang Q.	PMS1T, producing phased small-interfering RNAs, regulates photoperiod-sensitive male sterility in rice.	Proc. Natl. Acad. Sci. U.S.A.	113(52)	15144-15149	2016	PMS1	PMS1T
43581	27956642	Park K., Kim M.Y., Vickers M., Park J.S., Hyun Y., Okamoto T., Zilberman D., Fischer R.L., Feng X., Choi Y., Scholten S.	DNA demethylation is initiated in the central cells of Arabidopsis and rice.	Proc. Natl. Acad. Sci. U.S.A.	113(52)	15138-15143	2016		
43582	28002408	Yamaji N., Takemoto Y., Miyaji T., Mitani-Ueno N., Yoshida K.T., Ma J.F.	Reducing phosphorus accumulation in rice grains with an impaired transporter in the node.	Nature	541(7635)	92-95	2017	SULTR3;4	OsSultr3;4, OsSul3;4, OsaSULTR3;4, SPDT, OsSPDT
43583	28028235		Correction for Chang et al., Construction of a male sterility system for hybrid rice breeding and seed production using a nuclear male sterility gene.	Proc. Natl. Acad. Sci. U.S.A.	114(1)	E107	2017		
43584	27990147	Begum M.A., Shi X.X., Tan Y., Zhou W.W., Hannun Y., Obeid L., Mao C., Zhu Z.R.	Molecular Characterization of Rice OsLCB2a1 Gene and Functional Analysis of its Role in Insect Resistance.	Front Plant Sci	7	1789	2016	LCB2A2,LCB2A3,LCB2A1	OsLCB2a2, LCB2a2,OsLCB2a3, LCB2a3,OsLCB2a1, LCB2a1
43585	27935412	Lee D.K., Yoon S., Kim Y.S., Kim J.K.	Rice OsERF71-mediated root modification affects shoot drought tolerance.	Plant Signal Behav		0	2016	ERF71,CCR1	OsERF#071, OsERF071, OsERF71, AP2/EREBP#124, AP2/EREBP124, OsERF15,OsCCR1
43586	28039904	Peng C., Liang X., Liu E.E., Zhang J.J., Peng X.X.	The OCS-regulated oxalate and its distinct effects on resistance to bacterial blight and Al toxicity in rice.	Plant Biol (Stuttg)			2016	_	OsAAE3, AAE3, OsOCS, OCS, 4CL
43587	27992560	Qin H., Wang Y., Wang J., Liu H., Zhao H., Deng Z., Zhang Z., Huang R., Zhang Z.	Knocking Down the Expression of GMPase Gene OsVTC1-1 Decreases salt tolerance of Rice at Seedling and Reproductive Stages.	PLoS ONE	11(12)	e0168650	2016	MPG1	OsMPG1, OsVTC1-1, VTC1-1
43588	28013008	Malekzadeh R., Shahpiri A.	Independent metal-thiolate cluster formation in C-terminal Cys-rich region of a rice type 1 metallothionein isoform.	Int. J. Biol. Macromol.	96	436-441	2016		
43589	27917884	Wang M., Lu X., Xu G., Yin X., Cui Y., Huang L., Rocha P.S., Xia X.	OsSGL, a novel pleiotropic stress-related gene enhances grain length and yield in rice.	Sci Rep	6	38157	2016	SGL	OsSGL
43590	27940269	Chen Z., Chen M., Jiang M.	Hydrogen sulfide alleviates mercury toxicity by sequestering it in roots or regulating reactive oxygen species productions in rice seedlings.	Plant Physiol. Biochem.	111	179-192	2016		
43591	28025520	You M.K., Kim J.H., Lee Y.J., Jeong Y.S., Ha S.H.	Plastoglobule-Targeting Competence of a Putative Transit Peptide Sequence from Rice Phytoene Synthase 2 in Plastids.	Int J Mol Sci	18(1)		2016	PSY2	OsPSY2
43592	28000793	Singh A., Kumar P., Gautam V., Rengasamy B., Adhikari B., Udayakumar M., Sarkar A.K.	Root transcriptome of two contrasting indica rice cultivars uncovers regulators of root development and physiological responses.	Sci Rep	6	39266	2016		
43593	27907176	Kim I.S., Kim Y.S., Kim Y.H., Park A.K., Kim H.W., Lee J.H., Yoon H.S.	Correction: Potential Application of the Oryza sativa Monodehydroascorbate Reductase Gene (OsMDHAR) to Improve the Stress Tolerance and Fermentative Capacity of Saccharomyces cerevisiae.	PLoS ONE	11(12)	e0167843	2016		
43594	28066457	Dai Z., Wang J., Zhu M., Miao X., Shi Z.	OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.	Front Plant Sci	7	1891	2016	MIR172A,MIR172C,MIR172B,MIR172D,LHS1,AP2/EREBP59,RSR1,SNB,SHAT1,IDS1	OsmiR172a, miR172a, osa-MIR172a, Osa-miR172a ,OsmiR172c, miR172c, osa-MIR172c, Osa-miR172c ,OsmiR172b, miR172b, osa-MIR172b, Osa-miR172b ,OsmiR172d, miR172d, osa-MIR172d osa-miR172d osa-miR172d-3p osa-miR172d-5p, Osa-miR172d,OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO, OsLHS1, OsLG3b, LG3b, qLGY3, LGY3, DLN80, OsDLN80, OLR, OsOLR, GW3p6, OsGW3p6, OsMADS1GW3p6, MADS1GW3p6, qLGY3/OsLG3b/GW3p6,AP2/EREBP#059, AP2-4,AP2/EREBP#090, AP2/EREBP90, OsTOE1, TOE1, qHD5, AP2-1, AP2/EREBP/RSR1, OsRSR1, DLN130, DLN130a, DLN130b, OsDLN130, OsDLN130a, OsDLN130b,AP2/EREBP#073, AP2/EREBP73, AP2-3, OsAP2-3, SSH1, OsSSH1, OsSNB, DLN181, DLN181a, DLN181b, OsDLN181, OsDLN181a, OsDLN181b, SUI4, OsSUI4, SUI4/SNB,OsSHAT1, AP2/EREBP#043, AP2/EREBP43, AP2-5, DLN124, OsDLN124, ObSHAT1, OgSHAT1, OrSHAT1 ,OsIDS1, AP2/EREBP#033, AP2/EREBP33, AP2-33/IDS1, AP2-33, AP2-2, DLN104, OsDLN104
43595	28029278	Jang S.	A novel trimeric complex in plant cells that contributes to the lamina inclination of rice.	Plant Signal Behav		0	2016	ILI5,LO9-177,BHLH081	ILI5, OsILI5, PGL2, OsPGL2, Os170, OsBUL1, BUL1, ILI5/PGL2, OsbHLH170, bHLH170,OsLO9-177,OsbHLH081, bHLH081, OsBC1, BC1
43596	28013072	Wang X., Jiang D., Shi J., Yang D.	Expression of alpha-1,6-fucosyltransferase (FUT8) in rice grain and immunogenicity evaluation of plant-specific glycans.	J. Biotechnol.	242	111-121	2017		
43597	27913740	Wang X., Guan Y., Zhang D., Dong X., Tian L., Qu L.Q.	A beta-ketoacyl-CoA synthase is Involved in Rice Leaf Cuticular Wax Synthesis and requires a CER2-LIKE Protein as a Cofactor.	Plant Physiol.			2016	_,HMS1	OsCER2, CER2, HMS1I, OsHMS1I, OsCER26L, CER26L,CER6/CUT1, CER6, CUT1, OsCER6, WSL4, KCS6, OsKCS6, CER6/CUT1/KCS6, OsHMS1, OsKCS8, KCS8
43598	27924841	Lu G., Zhang T., He Y., Zhou G.	Virus altered rice attractiveness to planthoppers is mediated by volatiles and related to virus titre and expression of defence and volatile-biosynthesis genes.	Sci Rep	6	38581	2016	HPL3,AOS1,TPS29,ACS2,ICS1,TPS3	OsHPL3, CYP74B2, OsCYP74B2,OsAOS, OsAOS1, CYP74A1, OsAOS2, AOS2,OsTPS29, OsCAS, CAS, OsTPS3, TPS3, TPS33, OsTPS33,OsACS2, Os-ACS2,OsICS1, OsICS, ICS,OsTPS3, OsLIS, LIS, TPS22, OsTPS22
43599	28000033	Bhatnagar N., Min M.K., Choi E.H., Kim N., Moon S.J., Yoon I., Kwon T., Jung K.H., Kim B.G.	The protein phosphatase 2C clade A protein OsPP2C51 positively regulates seed germination by directly inactivating OsbZIP10.	Plant Mol. Biol.			2016	SAPK2,ABI5,ABI1,PYL/RCAR5	OsSAPK2, OsSnRK2.2, SnRK2.2,OsABI5, OsbZIP10, OsABF1, OREB1, OsABI5-1, OsABI5-2, OsOREB1, OREB1 ,OsPP2C51, PP2C51, OsPP79, PP79, OsABI1,OsPYL/RCAR5, PYL5, OsPYL5, OsPYL11, PYL11
43600	27864513	Chang Z., Chen Z., Wang N., Xie G., Lu J., Yan W., Zhou J., Tang X., Deng X.W.	Construction of a male sterility system for hybrid rice breeding and seed production using a nuclear male sterility gene.	Proc. Natl. Acad. Sci. U.S.A.	113(49)	14145-14150	2016	NP1 	OS-ACE, OsNP1, OsTMS18, TMS18
43601	27803308	Wang Y., Liu F., Ren Y., Wang Y., Liu X., Long W., Wang D., Zhu J., Zhu X., Jing R., Wu M., Hao Y., Jiang L., Wang C., Wang H., Bao Y., Wan J.	GOLGI TRANSPORT 1B Regulates Protein Export from the Endoplasmic Reticulum in Rice Endosperm Cells.	Plant Cell	28(11)	2850-2865	2016	_,GPA4 ,SAR1A	Sec23c,GOT1B, GLUP2 ,OsARL1e, ARL1e, OsSar1b, Sar1b, OsSar1a, Sar1a
43602	27889517	Nguyen H.P., Jeong H.Y., Jeon S.H., Kim D., Lee C.	Rice pectin methylesterase inhibitor28 (OsPMEI28) encodes a functional PMEI and its overexpression results in a dwarf phenotype through increased pectin methylesterification levels.	J. Plant Physiol.	208	17-25	2017		
43603	27878661	Ruan W., Guo M., Wu P., Yi K.	Phosphate starvation induced OsPHR4 mediates Pi-signaling and homeostasis in rice.	Plant Mol. Biol.			2016	IPS1,SPX1,MIR399J,PHR1,PHR4,LTN1,miR827,PI1,PHR3,PT2,PT10,PHR2	OsIPS1,OsSPX1,OsmiR399j, osa-miR399j, osa-MIR399j, Os-miR399j, miR399j,OsPHR1,OsPHR4, Os-PHR4,LTN1, OsPHO2, PHO2.1, PHO2.2, PHO2, OsUBC35, UBC35,miR827a, OsmiR827a, miR827, osa-miR827, osa-MIR827, OsMiR827, miR827b, osa-miR827b, osa-MIR827b,OsIPS2, IPS2, OsPI1,OsPHR3, Os-PHR3, OsPHL1, PHL1 ,OsPT2, PTH1-2, OsPht1;2, PHT1;2, OsPHT1;2,OsPT10, PHT1-10, OsPht1;10,OsPHR2, Os-PHR2
43604	27627618	Wang L., Yu C., Xu S., Zhu Y., Huang W.	OsDi19-4 acts downstream of OsCDPK14 to positively regulate ABA response in rice.	Plant Cell Environ.	39(12)	2740-2753	2016	ASPG1 ,NAC103,_,CDPK24	OsASPG1 ,ONAC103, OsNAC103, OsNAC18 , NAC18,OsDi19-4, Di19-4,OsCDPK24, OsCPK24, OsCDPK14, CPK24
43605	27875019	Xu R., Qin R., Li H., Li D., Li L., Wei P., Yang J.	Generation of targeted mutant rice using a CRISPR-Cpf1 system.	Plant Biotechnol. J.			2016		
43606	27897241	Jalmi S.K., Sinha A.K.	Functional Involvement of a Mitogen Activated Protein Kinase Module, OsMKK3-OsMPK7-OsWRK30 in Mediating Resistance against Xanthomonas oryzae in Rice.	Sci Rep	6	37974	2016	MSRMK2,MKK1,MKK6,MKK3,WRKY30,MAPK4,SMG1,DSG1,MPK6	OsMSRMK2, OsMAPK5, OsMAP1, OsMPK3, OsBIMK1, OsMAPK2, MPK5, BIMK1, MAPK2, MAPK5, MPK3, OsMPK5, OsMAPK3, OsMAPK5b, MAPK3,OsMKK1, OsMEK2, MEK2, OsMAPKK1, MAPKK1, OsMAP2K2, MAP2K2,OsMKK6, OsMEK1, MEK1, OsMAPKK6, MAPKK6, OsMPKK6, MPKK6, OsMAP1, MAP1,OsMKK3, OsMAPKK3, MAPKK3, OsMEK8a, MEK8a, OsMEK3, MEK3,OsWRKY30,OsMAPK4, OsMAP2, OsMSRMK3, OsMPK4, OsMPK7, MAP2, MSRMK3, MPK4, MPK7, MAPK7, OsMAPK7,OsMKK4, MKK4, OsMKK4/SMG1, OsMAPKK4, MAPKK4, OsMEK4, MEK4, OsSMG1, SMG1/OsMEK6, OsMEK6, MEK6, OsSTS, STS,OsMAPK6, MAPK6, OsMPK6, OsSIPK, SIPK, OsMAPK1, MAPK1, MPK1, OsMPK1, MPK6, OsDSG1,OsMPK6, OsDR6, DR6, OsMPK4, MPK4, OsMAPK4, MAPK4
43607	27965699	Ma X., Feng F., Wei H., Mei H., Xu K., Chen S., Li T., Liang X., Liu H., Luo L.	Genome-Wide Association Study for plant height and grain yield in Rice under Contrasting Moisture Regimes.	Front Plant Sci	7	1801	2016	_,GA2OX9,GNA1,GH3-2,RLK5 ,GA2OX3,CYP51G3,SAP11,SD1	OsRRMh, RRMh,OsGA2ox9, GA2ox7, 2-ODD35, Os2-ODD35, 2ODD35, Os2ODD35,OsGNA1,OsGH3-2, OsGH3.2, GH3.2,OsRLK5 ,OsGA2ox3, ga2ox 3, OsGA2ox-3, GA2ox3, GA2ox-3, GA2ox4,OsCYP51G3,OsDOG, OsSAP11, DOG,sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2, OsPHQ1, OsPHq1, PHq1
43608	27803124	Xu J.J., Zhang X.F., Xue H.W.	Rice aleurone layer specific OsNF-YB1 regulates grain filling and endosperm development by interacting with an ERF transcription factor.	J. Exp. Bot.	67(22)	6399-6411	2016	HAP5K,ERF115,HAP5L,HAP3K	OsHAP5K, OsNF-YC11, NF-YC11, OsNF-YC12, NF-YC12, NFYC12,OsERF#115, OsERF115, AP2/EREBP#110, AP2/EREBP110, OsEnS-123,OsEnS-133, OsHAP5L, OsNF-YC12, NF-YC12, OsNF-YC11, NF-YC11, NFYC11,OsHAP3K/OsNF-YB1, OsHAP3K, OsNF-YB1, NF-YB1, nf-yb1, OsLEC1, OsNF-YB-1, NFYB1, OsEnS-41
43609	27813190	Betterle N., Poudyal R.S., Rosa A., Wu G., Bassi R., Lee C.H.	The STN8 kinase-PBCP phosphatase system is responsible for high-light-induced reversible phosphorylation of the PSII inner antenna subunit CP29 in rice.	Plant J.			2016	CP29,STN7,STN8,PP2C1	OsCP29, LHCB4, Lhcb4, OsLHCB4,OsSTN7,OsSTN8,OsPP2C01, PP2C01, OsPP2C1, OsPP1, OsPBCP, PBCP 
43610	27892643	Lee D.K., Chung P.J., Jeong J.S., Jang G., Bang S.W., Jung H., Kim Y.S., Ha S.H., Choi Y.D., Kim J.K.	The rice OsNAC6 transcription factor orchestrates multiple molecular mechanisms involving root structural adaptions and nicotianamine biosynthesis for drought tolerance.	Plant Biotechnol. J.			2016	NAC6	OsNAC6, ONAC048, NAC48, SNAC2, SNAC2/OsNAC6, OsNAC6/ONAC048, OsSNAC2, SNAC-2, OsSNAC-2, OsNAC2
43611	27878652	Hu L., He H., Zhu C., Peng X., Fu J., He X., Chen X., Ouyang L., Bian J., Liu S.	Genome-wide identification and phylogenetic analysis of the chalcone synthase gene family in rice.	J. Plant Res.	130(1)	95-105	2017	PKS3,PKS20,LAP6,PKS25,PKS19,PKS4,PKS1 ,PKS27,PKS5,PKS9,PKS23,PKS22,PKS18,CHS,PKS2,PKS12,PKS17,PKS15,PKS10,PKS16,PKS14,PKS13,PKS11,PKS7,PKS8,PKS6,PKS24	OsPKS03, PKS03, OsPKS3, OsCHS3, CHS3,OsPKS20, OsCHS21, CHS21,OsPKS1, PKS1, YY2, OsPKS21, PKS21, OsLAP6/OsPKS1, OsLAP6, OsCHS22, CHS22,OsPKS25, OsCHS23, CHS23, OsCHS26, CHS26,OsPKS19, OsCHS20, CHS20,OsPKS04, PKS04, OsPKS4, OsCHS4, CHS4,OsPKS01, PKS01, OsPKS1, OsCHS1, CHS1,OsPKS27, OsCHS25, CHS25, OsCHS28, CHS28,OsPKS05, PKS05, OsPKS5, OsCHS5, CHS5,OsPKS09, PKS09, OsPKS9, OsCHS9, CHS9,OsPKS23, OsCHS29, CHS29, OsCHS24, CHS24,OsPKS22, OsCHS28, CHS28,OsPKS18, OsCHS18, CHS18,CHS*, Oschs, chs, chas, OsCHS, OsCHS1, CHS1, OsPKS26, PKS26, OsCHS24, CHS24, OsCHS27, CHS27,CHS, OsPKS02, OsPKS2, PKS02, OsCHS2, CHS2,CHS, OsPKS12, OsCHS12, CHS12,OsPKS17, OsCHS17, CHS17,OsPKS15, OsCHS15, CHS15,OsPKS10, OsPKS2, PKS2, OsCHS10, CHS10,OsPKS16, OsCHS16, CHS16,OsPKS14, OsCHS14, CHS14,OsPKS13, OsCHS13, CHS13,OsPKS11, OsCHS11, CHS11,OsPKS07, PKS07, OsPKS7, OsCHS7, CHS7,OsCHS2, CHS2, OsPKS08, OsPKS8, PKS08, OsCHS8, CHS8,CHS, OsPKS06, OsPKS6, PKS06, OsCHS6, CHS6,OsPKS24, OsCHS30, CHS30, OsCHS25, CHS25
43612	27888467	Peng X., Wang H., Jang J.C., Xiao T., He H., Jiang D., Tang X.	OsWRKY80-OsWRKY4 Module as a Positive Regulatory Circuit in Rice Resistance Against Rhizoctonia solani.	Rice (N Y)	9(1)	63	2016	WRKY80,WRKY4	OsWRKY80,OsWRKY4, WRKY122, OsWRKY122
43613	27832344	Li L., Ye T., Gao X., Chen R., Xu J., Xie C., Zhu J., Deng X., Wang P., Xu Z.	Molecular characterization and functional analysis of the OsPsbR gene family in rice.	Mol. Genet. Genomics			2016	PSBR3,PSBR,_	OsPsbR3, PsbR3,PsbR, OsPsbR1, PsbR1, OsPSBR,OsPsbR2, PsbR2
43614	27879391	Jang S., An G., Li H.Y.	Rice Leaf Angle and grain size.Are Affected by the OsBUL1 Transcriptional Activator Complex.	Plant Physiol.	173(1)	688-702	2017	BHLH081,ILI5,ILI3,IBH1,_,LO9-177	OsbHLH081, bHLH081, OsBC1, BC1,ILI5, OsILI5, PGL2, OsPGL2, Os170, OsBUL1, BUL1, ILI5/PGL2, OsbHLH170, bHLH170,OsILI3, OsbHLH153, bHLH153, OsBUL2, BUL2,Os IBH1, OsIBH1, OsbHLH175, bHLH175,OsBUL3, BUL3, OsbHLH174, bHLH174 ,OsLO9-177
43615	27820840	Huang A., Sang Y., Sun W., Fu Y., Yang Z.	Transcriptomic Analysis of Responses to Imbalanced Carbon: Nitrogen Availabilities in Rice Seedlings.	PLoS ONE	11(11)	e0165732	2016		
43616	27864442	Gao Y., He C., Zhang D., Liu X., Xu Z., Tian Y., Liu X.H., Zang S., Pauly M., Zhou Y., Zhang B.	Two Trichome Birefringence-Like Proteins Mediate Xylan Acetylation, Which Is Essential for Leaf Blight Resistance in Rice.	Plant Physiol.	173(1)	470-481	2017	_,TBL61,XOAT10,_,XOAT13,XOAT3,XOAT8,_,TBL57,_,_,TBL60,_,_,_,_,_,_,XOAT11,_,TBL64,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,XOAT9,XOAT1,_,TBL58,XOAT7,_,TBL63,_,_,_,_,XOAT2,XOAT14,_,_,XOAT5,_,XOAT4,_,XOAT6,XOAT12,_,_,_,TBL55,_,_,_,_,_	OsTBL62, TBL62,OsTBL61, OsXyBAT5, XyBAT5,OsTBL5, TBL5, OsXOAT10,OsTBL50, TBL50,OsTBL1, TBL1, OsXOAT13,OsTBL9, TBL9, OsXOAT3,OsTBL8, TBL8, OsXOAT8,OsTBL40, TBL40,OsTBL57, OsXyBAT1, XyBAT1,OsTBL48, TBL48,OsTBL34, TBL34,OsTBL60, OsXyBAT4, XyBAT4,OsTBL52, TBL52,OsTBL53, TBL53,OsTBL56, TBL56,OsTBL41, TBL41,OsTBL31, TBL31,OsTBL19, TBL19,OsTBL6, TBL6, OsXOAT11,OsTBL43, TBL43,OsTBL64, OsXyBAT7, XyBAT7,OsTBL30, TBL30,OsTBL49, TBL49,OsTBL32, TBL32,OsTBL45, TBL45,OsTBL35, TBL35,OsTBL25, TBL25,OsTBL29, TBL29,OsTBL26, TBL26,OsTBL18, TBL18,OsTBL21, TBL21,OsTBL22, TBL22,OsTBL7, TBL7,OsTBL20, TBL20,OsTBL38, TBL38,OsTBL42, TBL42,OsTBL4, TBL4, OsXOAT9,OsTBL12, TBL12, OsXOAT1,OsTBL65, TBL65,OsTBL58, OsXyBAT2, XyBAT2,OsTBL14, TBL14, OsXOAT7,OsTBL33, TBL33,OsTBL63, OsXyBAT6, XyBAT6,OsTBL46, TBL46,OsTBL28, TBL28,OsTBL37, TBL37,OsTBL17, TBL17,OsTBL11, TBL11, OsXOAT2,OsTBL3, TBL3, OsXOAT14,OsTBL39, TBL39,OsTBL47, TBL47,OsTBL13, TBL13, OsXOAT5,OsTBL36, TBL36,OsTBL10, TBL10, OsXOAT4,OsTBL23, TBL23,OsTBL15, TBL15, OsXOAT6,OsTBL2, TBL2, OsXOAT12,OsTBL44, TBL44,OsTBL51, TBL51,OsTBL16, TBL16,OsTBL55, OsXyBAT3, XyBAT3,OsTBL27, TBL27,OsTBL66, TBL66,OsTBL24, TBL24,OsTBL59, TBL59,OsTBL54, TBL54
43617	27829023	Liu H., Dong S., Sun D., Liu W., Gu F., Liu Y., Guo T., Wang H., Wang J., Chen Z.	CONSTANS-Like 9 (OsCOL9) Interacts with Receptor for Activated C-Kinase 1(OsRACK1) to Regulate Blast Resistance through Salicylic Acid and Ethylene Signaling Pathways.	PLoS ONE	11(11)	e0166249	2016	PR1B,BBX10,RACK1,NH1,PR1A,ACO1,WRKY45,ACS1	OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1, OsPR1a, PR1a,OsBBX10, OsJ, OsCCT14, OsCOL10, COL10, OsCOL9, CCT14, COL9,RACK1A, RWD, OsWD40-21, OsRACK1, OsRACK1A,OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2, DLN5, OsDLN5,  OsBTBA1, BTBA1,OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1, OsPR1b, PR1alpha, OsPR1alpha,OsACO1, ACO,OsWRKY45, OsWRKY45-1, OsWRKY45-2, WRKY45-1, WRKY45-2,ACC1*, OsACS1, Os-ACS1, ACC1, OsACC1
43618	27871243	Li Y., Li D., Guo Z., Shi Q., Xiong S., Zhang C., Zhu J., Yang Z.	OsACOS12, an orthologue of Arabidopsis acyl-CoA synthetase5, plays an important role in pollen exine formation and anther development in rice.	BMC Plant Biol.	16(1)	256	2016	ACS9	OsACS9, 4CL4, OsACOS12, ACOS12 
43619	27715009	Wetterhorn K.M., Newmister S.A., Caniza R.K., Busman M., McCormick S.P., Berthiller F., Adam G., Rayment I.	Crystal Structure of Os79 (Os04g0206600) from Oryza sativa: A UDP-glucosyltransferase Involved in the Detoxification of Deoxynivalenol.	Biochemistry	55(44)	6175-6186	2016	UGT74J5	UDP-GT, Os79, OsUGT74J5
43620	27794118	Ordonio R.L., Matsuoka M.	Increasing resistant starch content in rice for better consumer health.	Proc. Natl. Acad. Sci. U.S.A.			2016	FLO5,WX1	OsSSIIIa, SSIII-2, OsSSIII-2, OsSS3A, SS3A, SS3a, OsSSSIIIa, SSIIIa, Flo5,wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx
43621	27791169	Zhao Y., Huang J., Wang Z., Jing S., Wang Y., Ouyang Y., Cai B., Xin X.F., Liu X., Zhang C., Pan Y., Ma R., Li Q., Jiang W., Zeng Y., Shangguan X., Wang H., Du B., Zhu L., Xu X., Feng Y.Q., He S.Y., Chen R., Zhang Q., He G.	Allelic diversity in an NLR gene BPH9 enables rice to combat planthopper variation.	Proc. Natl. Acad. Sci. U.S.A.			2016	BPH7,BPH10,BPH1,BPH21,BPH9	bph7,Bph10(t)*, Bph10,Bph1,Bph21(t),Bph9, BPH9/26, Bph26(t), BPH26, Bph18(t), BPH18
43622	27661977	Athwal N.S., Alagurajan J., Andreotti A.H., Hargrove M.S.	Role of Reversible Histidine Coordination in Hydroxylamine Reduction by Plant Hemoglobins (Phytoglobins).	Biochemistry			2016		
43623	27742800	Hou C.Y., Lee W.C., Chou H.C., Chen A.P., Chou S.J., Chen H.M.	Global Analysis of Truncated RNA Ends Reveals New Insights into Ribosome Stalling in Plants.	Plant Cell	28(10)	2398-2416	2016		
43624	27791174	Zhou H., Wang L., Liu G., Meng X., Jing Y., Shu X., Kong X., Sun J., Yu H., Smith S.M., Wu D., Li J.	Critical roles of soluble starch synthase SSIIIa and granule-bound starch synthase Waxy in synthesizing resistant starch in rice.	Proc. Natl. Acad. Sci. U.S.A.			2016	FLO5,WX1	OsSSIIIa, SSIII-2, OsSSIII-2, OsSS3A, SS3A, SS3a, OsSSSIIIa, SSIIIa, Flo5,wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx
43625	27833629	Ling F., Zhou F., Chen H., Lin Y.	Development of Marker-Free Insect-Resistant Indica Rice by Agrobacterium tumefaciens-Mediated Co-transformation.	Front Plant Sci	7	1608	2016		
43626	27718311	He X., Li L., Xu H., Xi J., Cao X., Xu H., Rong S., Dong Y., Wang C., Chen R., Xu J., Gao X., Xu Z.	A rice jacalin-related mannose-binding lectin gene, OsJRL, enhances Escherichia coli viability under high salinity stress and improves salinity tolerance of rice.	Plant Biol (Stuttg)			2016	SKC1,SALT,ERF42,HKT6,LEA3-1,LIP5,DHN1,HKT7,DREB1A	OsHKT8, HKT8, Os-HKT1;5, OsHKT1;5, HKT1;5, SKC1, qSKC-1(t), OsSKC1,salT*(sal1), SalT1*, sal1, Sal1, SALT, ML, SalT, OsSalT, OsJRL, JRL, Osl43, OsL43, OsMBL1, MBL1, OsJRL01, JRL01, OsJRL1, JRL1,OsERF#042, OsERF042, OsERF42, AP2/EREBP#048, AP2/EREBP48, OsDREB2B, DREB2B, OsDREB2B2, OsDREB2A, DREB2A,OsHKT6, OsHKT1;3, HKT1;3, OsHKT1;3_FL, OsHKT1;3_V1, OsHKT1;3_V2, OsHKT1;3_V3, OsHKT1;3_V4, OsHKT1;3_V5,OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3, OsLEA3A, LEA3A,OsLEA24, LEA24, WSI724, OsWSI724, OsLIP5,LIP9, OsLIP9, lip9, DHN1, DIP1, OsDip1, OsLEA23, OsDhn1, COR410, OsLEA23/DIP1, DIP1/OsLEA23,OsHKT7, OsHKT1;4, HKT1;4,OsDREB1A, Os DREB1A, CBF3, OsCBF3, OsDREB1A/OsCBF3, ERF24, OsERF24, OsERF024, OsERF#024, AP2/EREBP#114, AP2/EREBP114, OsDREBL
43627	27797431	Kaur C., Tripathi A.K., Nutan K.K., Sharma S., Ghosh A., Tripathi J.K., Pareek A., Singla-Pareek SL., Sopory S.K.	A nucleus-localized rice glyoxalase I enzyme, OsGLYI-8 functions in the detoxification of methylglyoxal in the nucleus.	Plant J.			2016	GLYI8	OsGLYI8, OsGLYI-8, GLYI-8
43628	27702843	Shi S., Wang T., Chen Z., Tang Z., Wu Z., Salt D.E., Chao D.Y., Zhao F.J.	OsHAC1;1 and OsHAC1;2 Function as Arsenate Reductases and Regulate Arsenic Accumulation.	Plant Physiol.	172(3)	1708-1719	2016	HAC1;2,HAC1;1 	OsStr6, STR6, OsRhST, RLD, OsHAC1;2,OsStr5, STR5, OsHAC1;1
43629	27835768	Tominaga J., Mizutani H., Horikawa D., Nakahara Y., Takami T., Sakamoto W., Sakamoto A., Shimada H.	Rice CYO1, an ortholog of Arabidopsis thaliana cotyledon chloroplast biogenesis factor AtCYO1, is expressed in leaves and involved in photosynthetic performance.	J. Plant Physiol.	207	78-83	2016	CYO1	OsCYO1 
43630	27742884	Mitani-Ueno N., Yamaji N., Ma J.F.	High Silicon Accumulation in the Shoot is Required for Down-Regulating the Expression of Si Transporter Genes in Rice.	Plant Cell Physiol.	57(12)	2510-2518	2016	LSI1	lsi1, NIP2-1, OsNIP2;1, NIP2;1, OsLsi1, lsi(t), OsNIP2.1/OsLsi1/OsSIIT1, OsNIP2.1, NIP2.1
43631	27701783	Yang C., Li W., Cao J., Meng F., Yu Y., Huang J., Jiang L., Liu M., Zhang Z., Chen X., Miyamoto K., Yamane H., Zhang J., Chen S., Liu J.	Activation of ethylene signaling pathways enhances disease resistance by regulating ROS and phytoalexin production in rice.	Plant J.			2016	RBOHB,EIN2,PR1A,OPR6,OPR5,ACS2,JAR1,KS8,KS7,RBOHA,EIL1A,OPR4	rbohB, OsrbohB, Os rbohB, OsRbohB, OsNox1, Nox1, Os-RbohB, RbohB, OsRboh1, Rboh1,OsEIN2, MHZ7/OsEIN2, OsEIN2/MHZ7, MHZ7 ,OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1, OsPR1b, PR1alpha, OsPR1alpha,OsOPR6, OsOPR4, OsOPR06-1,OsOPR5, OsOPR6, OsOPR06-2, OPR4,OsACS2, Os-ACS2,OsJAR1, OsGH3.5, GH3.5, OsGH3-5, GH3-5,OsKS8, KS8, KSL8, OsKSL8, DTC2, OsDTC2, OsDTC2/OsKS8, OsTPS32, TPS17, OsTPS17, KSL11, OsKSL11,OsKS7, KS7, KSL7, OsKSL7, DTC1, OsDTC1, OsKS3, OsDTC1/OsKS7, OsTPS6, TPS6, TPS38, OsTPS38,rbohA, OsrbohA, Os rbohA, OsRbohA, OsNox2, Nox2, OsRboh2, Rboh2,EIL1, OsEIL1, EIL1a, OsEIL1a, MHZ6/OsEIL1, MHZ6, OsMHZ6,OsOPR4, OsOPR10, OsOPR06-3, OsOPR7
43632	27714489	Chou W.L., Chung Y.L., Fang J.C., Lu C.A.	Novel interaction between CCR4 and CAF1 in rice CCR4-NOT deadenylase complex.	Plant Mol. Biol.			2016	CAF1-1,CAF1-12,CAF1-13,CCR4A,_,CCR4B	OsCAF1H, CAF1H, OsCAF1-1,OsCAF1A, CAF1A, OsCAF1-12,OsCAF1G, CAF1G, OsCAF1-13,OsCCR4a,OsNOT1, NOT1,OsCCR4b
43633	27766460	Almeida D.M., Gregorio G.B., Oliveira M.M., Saibo N.J.	Five novel transcription factors as potential regulators of OsNHX1 gene expression in a salt tolerant rice genotype.	Plant Mol. Biol.			2016	NLP3,PCF2,NLP2,_,NHX1,NLP5	OsNLP3,OsPCF2,OsNLP2,OsCPP5, CPP5,OsNHX1, OcNHX1, OgNHX1, OrNHX1, OpNHX1, ObNHX1,OsNLP5, NLP5.1, NLP5.2, NLP5.3, NLP5.4, NLP5.5
43634	27757415	Karlen S.D., Zhang C., Peck M.L., Smith R.A., Padmakshan D., Helmich K.E., Free H.C., Lee S., Smith B.G., Lu F., Sedbrook J.C., Sibout R., Grabber J.H., Runge T.M., Mysore K.S., Harris P.J., Bartley L.E., Ralph J.	Monolignol ferulate conjugates are naturally incorporated into plant lignins.	Sci Adv	2(10)	e1600393	2016	PMT,AT10,AT5	OsAT4, OsAt4, AT4, OsPMT, OsAT4/PMT, OsAT4/PMT1, OsAT4/OsPMT1, OsPMT1,OsAT10, OsAt10,OsAT5, OsAt5, OsFMT1, FMT1, OsFMT/AT5, OsFMT, FMT
43635	27730518	Yu N., Liang Y., Peng X., Hou X.	Molecular and Bioinformatic Characterization of the Rice ROOT UV-B SENSITIVE Gene Family.	Rice (N Y)	9(1)	55	2016	RUS6A,RUS6B,RUS2,RUS1,RUS5,RUS3	OsRUS6A,OsRUS6B,OsRUS2, OsRUS2.1, OsRUS2.2,OsRUS1,OsRUS5,OsRUS3
43636	27744299	Yokosho K., Yamaji N., Fujii-Kashino M., Ma J.F.	Retrotransposon-Mediated Aluminum Tolerance through Enhanced Expression of the Citrate Transporter OsFRDL4.	Plant Physiol.	172(4)	2327-2336	2016	FRDL4,ZOS12-02	OsFRDL4, MATE,OsART1, STAR3, OsZOS12-02, ART1
43637	27826301	Hu R., Qiu D., Chen Y., Miller A.J., Fan X., Pan X., Zhang M.	Knock-Down of a Tonoplast Localized Low-Affinity Nitrate Transporter OsNPF7.2 Affects Rice Growth under High Nitrate Supply.	Front Plant Sci	7	1529	2016	NPF7.2	OsNPF7.2
43638	27694845	Fang C., Chen W., Li C., Jian X., Li Y., Lin H., Lin W.	Methyl-CpG binding domain protein acts to regulate the repair of cyclobutane pyrimidine dimers on rice DNA.	Sci Rep	6	34569	2016	CRY1A,_,CPD,PHRL,_,_,MBD707,CRY2	OsCRY1a, OsCRY1, CRY1a, CRY2, OsCCT1a, CCT1a,,qUVR-10, OsPHR, PHR, OsCPD,OsPHRL,,PHR2,OsMeCP, MeCP, OsMBD707,OsCRY2
43639	27718117	Li X., Han H., Chen M., Yang W., Liu L., Li N., Ding X., Chu Z.	Overexpression of OsDT11, which encodes a novel cysteine-rich peptide, enhances drought tolerance and increases ABA concentration in rice.	Plant Mol. Biol.			2016	DT11,_,BZIP23	OsDT11,Os2H16, 2H16,OsbZIP23, OsAREB1, OsABF2, Osbzip23, OsAREB2, OsZIP23, ZIP23
43640	27702997	Fei Q., Yang L., Liang W., Zhang D., Meyers B.C.	Dynamic changes of small RNAs in rice spikelet development reveal specialized reproductive phasiRNA pathways.	J. Exp. Bot.	67(21)	6037-6049	2016	MIL2,_,AGO1D,MEL1,MSP1,AGO18	OsTDL1A, TDL1A, OsMIL2, OsTDL1A/MIL2, OsTDL1a ,OsAGO2b, AGO2b,OsAGO1d, AGO1d,mel1, OsMEL1, MEAL1, OsMEAL1, OsAGO5c ,Msp1, OsMSP1, OsTMS15, TMS15,OsAGO18
43641	27708383	Soda N., Sharan A., Gupta B.K., Singla-Pareek SL., Pareek A.	Evidence for nuclear interaction of a cytoskeleton protein (OsIFL) with metallothionein and its role in salinity stress tolerance.	Sci Rep	6	34762	2016	LMPA,_,TIP1,MTI4A,IF	OSA7, OsA7, osAHA7, AHA7, PAA-Hwa, OsLMPA,BIP131,OsTIP1, OsDHHC05, DHHC05, OsDHHC5, DHHC5,OsMT1a, OsMT1a1, OsMT1a2, OsMT-I-4a, OsIDS1, OsMT1b, MT1b,OsIFL, IFL, OsIF
43642	27716044	Cao Y., Ai H., Jain A., Wu X., Zhang L., Pei W., Chen A., Xu G., Sun S.	Identification and expression analysis of OsLPR family revealed the potential roles of OsLPR3 and 5 in maintaining phosphate homeostasis in rice.	BMC Plant Biol.	16(1)	210	2016	SPX1,LPR3,LPR2,LPR5,SIZ1,LTN1,LPR4,LPR1 	OsSPX1,OsLPR3,OsLPR2,OsSTA2, STA2, OsLPR5,OsSIZ1, OsSIZ1.1, OsSIZ1.2, OsSIZ1.3, DLN131, OsDLN131, OsPHD23, PHD23,LTN1, OsPHO2, PHO2.1, PHO2.2, PHO2, OsUBC35, UBC35,OsLPR4,OsLPR1 
43643	27833617	Daware A., Das S., Srivastava R., Badoni S., Singh A.K., Agarwal P., Parida S.K., Tyagi A.K.	An Efficient Strategy Combining SSR Markers- and Advanced QTL-seq-driven QTL Mapping Unravels Candidate Genes Regulating grain weight in Rice.	Front Plant Sci	7	1535	2016	_,SCP27	OsXIP, XIP,OsEnS-75, OsSCP27, OsSCP28, SCP28
43644	27771249	Wu Y., Luo L., Chen L., Tao X., Huang M., Wang H., Chen Z., Xiao W.	Chromosome mapping, molecular cloning and expression analysis of a novel gene response for leaf width in rice.	Biochem. Biophys. Res. Commun.	480(3)	394-401	2016	NAL11	OsDjC58, DjC58, OsHSP40, HSP40, LM7, OsLM7
43645	27601671	Ji J., Tang D., Shen Y., Xue Z., Wang H., Shi W., Zhang C., Du G., Li Y., Cheng Z.	P31comet, a member of the synaptonemal complex, participates in meiotic DSB formation in rice.	Proc. Natl. Acad. Sci. U.S.A.	113(38)	10577-82	2016	COM1,P31COMET,RAD51C,ZEP1,CRC1	OsCOM1,P31comet, OsBVF1, BVF1 ,OsRAD51C, OsRad51C, RAD51C-1, RAD51C-2, RAD51C-3,OsZEP1,OsCRC1
43646	27602511	Huang X., Yang S., Gong J., Zhao Q., Feng Q., Zhan Q., Zhao Y., Li W., Cheng B., Xia J., Chen N., Huang T., Zhang L., Fan D., Chen J., Zhou C., Lu Y., Weng Q., Han B.	Genomic architecture of heterosis for yield traits in rice.	Nature	537(7622)	629-633	2016	TMS5,HD5,SPK,WFP,HD3A,LAX1	tms5, NAC18, ONAC023, ONAC23, NAC23, TMS5/ONAC023, OsEnS-30,Hd5(t)*, Hd5, qHD5, HAP3H, OsHAP3H, NF-YB, CBF-A, DTH8 , qHD5(t)*, Ghd8, Ghd8/DTH8, Lhd1, NF-YB11, OsNF-YB11, NFYB11, LH8, DTH8/Ghd8, RH8, DTH8/Ghd8/LHD1, CAR8, DTH8/Ghd8/ OsHAP3H, EF8, OsEF8,Spk(t), Spk(t)*), Spk, OsTAC1, TAC1, qTAC9 ,OsSPL14, SPL14, IPA1, WFP/IPA1, OsSPL14/WFP/IPA1, OsIPA1,  IPA1/OsSPL14,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,lax, lax(lx), lx, OsbHLH123, bHLH123, OsLAX1, BOS1, OsBOS1
43647	27634315	Jin J., Hua L., Zhu Z., Tan L., Zhao X., Zhang W., Liu F., Fu Y., Cai H., Sun X., Gu P., Xie D., Sun C.	GAD1 Encodes a Secreted Peptide That Regulates Grain Number, Grain Length, and Awn Development in Rice Domestication.	Plant Cell	28(10)	2453-2463	2016	DST,AN1,LABA1,RAE2 ,GN1A	OsDST, DLN102, OsDLN102, HST1, OsHST1,An-1, OsbHLH093, RAE1, An-1/RAE1, RAE1/An-1, OsRAE1, OsAn-1, OgRAE1,LOGL6, OsLOGL6, An-2,OsEPFL1, EPFL1, GAD1, OsGAD1, OsRAE2, GLA, OsGLA, GAD1/RAE2, OgRAE2,Gn1a, OsCKX2, CKX2, ckx2, Gn1a/OsCKX2, Os CKX2, CKX2/Gn1a
43648	27655841	Lockhart J.	Field of Genes: Uncovering EGRINs (Environmental Gene Regulatory Influence Networks) in Rice That Function during High-Temperature and Drought Stress.	Plant Cell	28(10)	2346-2347	2016		
43649	27663737	Li D., Huang Z., Song S., Xin Y., Mao D., Lv Q., Zhou M., Tian D., Tang M., Wu Q., Liu X., Chen T., Song X., Fu X., Zhao B., Liang C., Li A., Liu G., Li S., Hu S., Cao X., Yu J., Yuan L., Chen C., Zhu L.	Integrated analysis of phenome, genome, and transcriptome of hybrid rice uncovered multiple heterosis-related loci for yield increase.	Proc. Natl. Acad. Sci. U.S.A.	113(41)	E6026-E6035	2016	HD5	Hd5(t)*, Hd5, qHD5, HAP3H, OsHAP3H, NF-YB, CBF-A, DTH8 , qHD5(t)*, Ghd8, Ghd8/DTH8, Lhd1, NF-YB11, OsNF-YB11, NFYB11, LH8, DTH8/Ghd8, RH8, DTH8/Ghd8/LHD1, CAR8, DTH8/Ghd8/ OsHAP3H, EF8, OsEF8
43650	27655842	Wilkins O., Hafemeister C., Plessis A., Holloway-Phillips MM., Pham G.M., Nicotra A.B., Gregorio G.B., Jagadish S.V., Septiningsih E.M., Bonneau R., Purugganan M.	EGRINs (Environmental Gene Regulatory Influence Networks) in Rice That Function in the Response to Water Deficit, High Temperature, and Agricultural Environments.	Plant Cell	28(10)	2365-2384	2016		
43651	27618555	Zhu X., Yin J., Liang S., Liang R., Zhou X., Chen Z., Zhao W., Wang J., Li W., He M., Yuan C., Miyamoto K., Ma B., Wang J., Qin P., Chen W., Wang Y., Wang W., Wu X., Yamane H., Zhu L., Li S., Chen X.	The Multivesicular Bodies (MVBs)-Localized AAA ATPase LRD6-6 Inhibits Immunity and Cell Death Likely through Regulating MVBs-Mediated Vesicular Trafficking in Rice.	PLoS Genet.	12(9)	e1006311	2016	LMR,_,SNF7,_	OsLMR, LRD6-6, OsLRD6-6, SPL-A, OsSPL-A,OsSKD1, SKD1,OsSNF7, OsSnf7, Snf7 ,OsVPS2, VPS2
43652	27624698	Li Y.Y., Shen A., Xiong W., Sun Q.L., Luo Q., Song T., Li Z.L., Luan W.J.	Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.	Rice (N Y)	9(1)	46	2016	YGL10,CAB1R,RBCL,YAB3,YAB4,FGL,YAB5,HEMA,SH1,RBCS,YAB1,HB4,YAB6	CAO, OsCAO, CAO1, OsCAO1, Oslls1, Lls1, DVR, PGL,cab1R, LHCP, CAB, OsLhcb1, Lhcb1, Cab1, OsCAB1, Lhcb1b, OsLhcb1b, CAB2R,rbcL, rbcA, OsrbcL,OsYAB3, OsYAB4, TOB3,OsYAB4, OsYAB7, TOB2, ,fgl(fl), fl, fgl, OsFGL, OsPorB, PoPA, PORA, porA, OsPORA, PORB, OsPORB,OsYABBY5, OsYAB3, YAB3, Os YABBY5, TOB1, OsTPB1,HEMA1, OsHEMA, GluTR, OsHEMA1, hemA,YAB2, OsYAB2, OsSh1, Sh1, OsFIL2, OsSH1, Osh1,rbcS, OsRbcS, RBCS-C, RbcS2, OsRBCS2, RbcS1, OsRbcS2, OsrbcS1,OsYAB1, FIL1, osFIL1,OSHB4, OsHox32, HOX32, OsHB4, Oshox32, PHB3, OsHDZ13, OsHDZIP13, HDZ13, HDZIP13,OsYAB6, OsYAB5
43653	27620492	Liu H., Gu F., Dong S., Liu W., Wang H., Chen Z., Wang J.	CONSTANS-like 9 (COL9) delays the flowering time in Oryza sativa by repressing the Ehd1 pathway.	Biochem. Biophys. Res. Commun.	479(2)	173-178	2016	EF1,HD3A,ARP1,BBX10,RFT1,RACK1	Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,OsARP1, OsDRM1, DRM1,OsBBX10, OsJ, OsCCT14, OsCOL10, COL10, OsCOL9, CCT14, COL9,FT-L 3, OsFTL3, FTL3, FT-L3, RFT, OsRFT1,RACK1A, RWD, OsWD40-21, OsRACK1, OsRACK1A
43654	27733860	Moreno-Moyano LT., Bonneau J.P., S?nchez-Palacios JT., Tohme J., Johnson A.A.	Association of Increased Grain Iron and Zinc Concentrations with Agro-morphological Traits of Biofortified Rice.	Front Plant Sci	7	1463	2016	NAS2,NAS1	OsNAS2, OsNAS1,OsNAS1
43655	27588462	Lee S.K., Eom J.S., Hwang S.K., Shin D., An G., Okita T.W., Jeon J.S.	plastidic phosphoglucomutase and ADP-glucose pyrophosphorylase mutants impair starch synthesis in rice pollen grains and cause male sterility.	J. Exp. Bot.	67(18)	5557-5569	2016	PPGM,AGPL4,_	OspPGM, pPGM ,OsAGPL4, APL4, OsAPL4, OsSTA193,PFP, OscPGM, cPGM
43656	27582185	Hwang J.E., Jang D.S., Lee K.J., Ahn J.W., Kim S.H., Kang S.Y., Kim D.S., Kim J.B.	Identification of gamma ray irradiation-induced mutations in membrane transport genes in a rice population by TILLING.	Genes Genet. Syst.			2016	HKT6,AKT1,HAK11,NSCC2,SOS1	OsHKT6, OsHKT1;3, HKT1;3, OsHKT1;3_FL, OsHKT1;3_V1, OsHKT1;3_V2, OsHKT1;3_V3, OsHKT1;3_V4, OsHKT1;3_V5,OsAKT1, Os-AKT1,OsHAK11,OsNSCC2,OsSOS1, OsNHA1, NHA1, SOS1/NHX7, NHX7, OsNHX7
43657	27639642	Zhang Y., Zou B., Lu S., Ding Y., Liu H., Hua J.	Expression and promoter analysis of the OsHSP16.9C gene in rice.	Biochem. Biophys. Res. Commun.	479(2)	260-265	2016	HSP16.9C	Oshsp16.9C, OsHsp16.9C, HSP16.9C, OsHSP16.9C-CI, Oshsp 16.9C
43658	27592839	Liu X., Li X., Zhang C., Dai C., Zhou J., Ren C., Zhang J.	phosphoenolpyruvate carboxylase regulation in C4-PEPC-expressing transgenic rice during early responses to drought stress.	Physiol Plant			2016	OSK1,PPCK1,PPCK2,OSK4,OSK3	osk1, SnRK1A, OsSnRK1A, OsSNRK1a, SnRK1A/OSK1, SnRK1a, OsSnRK1.2, SnRK1.2, OsSnRK1alphaA, SnRK1alphaA,OsPPCK1,OsPPCK2, OsPPCK2L, OsPPCK2S,osk4, OsK4, OsATG1c, ATG1C, SnRK1B, snrk1b, SnRK1B/OSK24, OSK24, OsK24, OsSNRK1b, OsSnRK1.4, SnRK1.4, OsSnRK1alphaC, SnRK1alphaC,osk3, OsATG1b, ATG1B, OSK5, osk5, OSK35, SnRK1b, OsK35, OsSnRK1.1, SnRK1.1, OsSnRK1alphaB, SnRK1alphaB
43659	27695459	Cui P., Liu H., Islam F., Li L., Farooq M.A., Ruan S., Zhou W.	OsPEX11, a Peroxisomal Biogenesis Factor 11, Contributes to Salt Stress Tolerance in Oryza sativa.	Front Plant Sci	7	1357	2016	SKC1,SOS1,LTI6A,AKT1,HKT1,NHX1,PEX11-3,LRT2,LTI6B	OsHKT8, HKT8, Os-HKT1;5, OsHKT1;5, HKT1;5, SKC1, qSKC-1(t), OsSKC1,OsSOS1, OsNHA1, NHA1, SOS1/NHX7, NHX7, OsNHX7,OsLti6a, Lti6a, OsLTI6A, OsRCI2-10,OsAKT1, Os-AKT1,OsHKT1, OsHKT2;1, HKT2;1, Ni (Nipponbare)-OsHKT1, Po (Pokkali)-HKT1, OsHKT1;1, HKT1;1,OsNHX1, OcNHX1, OgNHX1, OrNHX1, OpNHX1, ObNHX1,OsPEX11-3, OsPEX11 ,CYC2, cyc2*, cyc2, OsCYP2, Cyp2, OsCYP19-2, CYP19-2, OsCYP-2, OsCyp2-P, OsCyp2, OsCYP19-1, LRT2/OsCYP2, lrt2*, lrt2, Ppcti ,OsLti6b, Lti6b, OsLTI6B, OsRCI2-6
43660	27703462	Wang W., Xu M., Liu X., Tu J.	The Rice Eukaryotic translation initiation factor 3 Subunit e (OseIF3e) Influences Organ Size and pollen Maturation.	Front Plant Sci	7	1399	2016	EIF6,KRP1,EIF3F,KRP5,EIF3E,EIF3D,EIF3H,EIF3K,EIF3B,KRP4	eIF-6, OseIF6, OseIF6.1, eIF6.1,OsiICK1, Orysa;KRP1, OrysaICK1, Orysa;ICK1, CDKI, OsICK1, ICK1, OsKRP1,eIF-3f, OseIF3f,OsiICK5, Orysa;KRP5, OrysaICK5, Orysa;ICK5, OsKRP5, OsICK5, ICK5 ,eIF-3e, OseIF3e,eIF-3d, OseIF3d,eIF-3h, OseIF3h,eIF-3k, OseIF3k,eIF-3b, OseIF3b,OsiICK6, Orysa;KRP4, OrysaICK6, Orysa;ICK6, OsKRP4, OsICK6, ICK6
43661	27621422	Duan L., Xiao W., Xia F., Liu H., Xiao J., Li X., Wang S.	Two Different Transcripts of a LAMMER Kinase Gene Play Opposite Roles in disease resistance.	Plant Physiol.	172(3)	1959-1972	2016	AOS2,_,PR1B,_	OsAOS2, CYP74A2, OsAOS, OsAOS1,Lox2:Os:1, OsLOX9, LOX9, OsLOX8, LOX8, OsLOX2, LOX2, OsRLL, OsHI-LOX, HI-LOX, RLL2 LOX, RLL2, Lox2osPil, OsLOX2;1, LOX2;1, OsLOX1, OsLOX7, LOX7,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1, OsPR1a, PR1a,OsAFC2, AFC2, OsDR11, DR11, OsDR11L, OsDR11S
43662	27611904	Vemanna R.S., Vennapusa A.R., Easwaran M., Chandrashekar B.K., Rao H., Ghanti K., Sudhakar C., Mysore K.S., Udayakumar M.	Aldo-keto reductase enzymes detoxify glyphosate and improve herbicide resistance in plants.	Plant Biotechnol. J.			2016	ARK1,AKR3	OsARK1, OsAKR4-1, AKR4-1,OsAKR3, OsALR1, ALR1, OsAKR4-3, AKR4-3
43663	27663411	Yu J., Meng Z., Liang W., Behera S., Kudla J., Tucker M.R., Luo Z., Chen M., Xu D., Zhao G., Wang J., Zhang S., Kim Y.J., Zhang D.	A Rice Ca2+ binding protein Is Required for Tapetum Function and pollen Formation.	Plant Physiol.	172(3)	1772-1786	2016	C6,CYP704B2,DEX1,ABCG15,CYP703A3,MS2	Osc6, Osg6B, OsG6B, OsLTPG25, OsLTPg25, OsLtpVII.1, Os C6,OsCYP704B2,Os DEX1, OsDEX1,OsABCG15, PDA, PDA1, OsABCG15/PDA1,OsCYP703A3,OsMS2, OsDPW, DPW, DPW1, OsDPW1, OsFAR2, FAR2
43664	27622591	Zhang Z., Cui X., Wang Y., Wu J., Gu X., Lu T.	The RNA Editing Factor wsp1 Is Essential for?Chloroplast Development in Rice.	Mol Plant	10(1)	86-98	2017	RBCS,PSBA,ST1,RPOTP,WSP1,RBCL,_,3'RPS12,NDHA,PSAA,V2,RPOB	rbcS, OsRbcS, RBCS-C, RbcS2, OsRBCS2, RbcS1, OsRbcS2, OsrbcS1,PsbA, psbA, OsPsbA, PSBD1, OsPSBD1, psbD1,st1(ws1), ws1, st1, OsST1, RNRS1, OsRNRS1, rnrs1, RNRS, SDL/RNRS1, SDL, OsSDL, NSL2, OsNSL2,OsRpo Tp, OsRpoTp, NEP, RpoTp, rpoTP2,OsWSP1, OsMORF2b, MORF2b, OsMORF2, OsMORF2/WSP1,rbcL, rbcA, OsrbcL,cp rpl13, cp RPL13, WLP1, RPL13,3'rps12, 3'-rps12, rps12,ndhA,PsaA, psaA, PsAA1, psaA1,v2, mGmk, GMK, Gmk, pt/mtGK, pt/mt GK, OsV2, OsGMK,rpoB, RpoB, Rpobeta
43665	27669230	Li L., Xu X., Chen C., Shen Z.	Genome-Wide Characterization and Expression Analysis of the Germin-Like Protein Family in Rice and Arabidopsis.	Int J Mol Sci	17(10)		2016	GLP9-2,GLP12-4,GLP5-2,GER1,GER2,OXO4,GER5,GLP2-3,GER7,OXO3,GER6,GLP8-11,GLP9-3,GLP4-1,GLP1-1,_,OXO1,GLP2-1,GER3,GLP3-9,OXO2,GLP2-2,GLP8-8,GLP9-1,GLP8-1,GLP12-2,GLP8-10,GLP12-1,GLP8-9,GLP12-3,GLP8-12,GLP3-8,GLP8-6,GLP2-4,GLP8-13,GER4,GLP5-1,GLP8-5,GLP3-2,GLP3-1,GLP1-3,GLP1-5,GLP11-1	OsGLP9-2, OsCDP9.5, CDP9.5,OsGLP12-4, OsCDP12.4, CDP12.4,OsGLP5-2, OsGLP5-1, GLP5-1, OsCDP5.2, CDP5.2,OsGLP8-4, GLP8-4, OsGER1, OsGer1, OsCDP8.4, CDP8.4,OsGLP8-3, GLP8-3, OsGER2, OsCDP8.3, CDP8.3,OsOxO4, OsGLP3-6, GLP3-6, OsCDP3.9, CDP3.9,OsGLP1, GLP1, GER1, GLP110, OsGER1, OsGER5, OsGLP8-14, GLP8-14, OsCDP8.14, CDP8.14,OsGLP2-3, OsCDP2.2, CDP2.2,OsGER7, OsGLP3-7, GLP3-7, OsCDP3.11, CDP3.11,OsOxO3, OsGLP3-5, GLP3-5, OsCDP3.8, CDP3.8,OsGLP8-7, GLP8-7, OsGER6, OsRGLP2, RGLP2, OsCDP8.7, CDP8.7,OsGLP8-11, RGLP1, OsRGLP1, OsCDP8.11, CDP8.11,OsGLP9-3, OsCDP9.6, CDP9.6,OsGLP4-1, OsCDP4.1, CDP4.1,OsGLP1-1, OsCDP1.1, CDP1.1,GER8, OsGLP1-4, GLP1-4, OsGLP1-3, GLP1-3,OsOxO1, OsGLP3-3, GLP3-3, OsCDP3.6, CDP3.6,OsGLP2-1, OsCDP2.1, CDP2.1,OsGLP8-2, GLP8-2, OsGER3, GLP16, OsEnS-117, OsCDP8.2, CDP8.2,OsGLP3-9, OsCDP3.12, CDP3.12,Osoxo4, OsOxO2, OsGLP3-4, GLP3-4, OsCDP3.7, CDP3.7,OsGLP2-2,OsGLP8-8, OsCDP8.8, CDP8.8,OsGLP9-1, OsCDP9.4, CDP9.4,OsGLP8-1, OsCDP8.1, CDP8.1,OsGLP12-2, OsCDP12.2, CDP12.2,OsGLP8-10, OsRGLP2, RGLP2, OsCDP8.10, CDP8.10,OsGLP12-1, OsCDP12.1, CDP12.1,OsGLP8-9, OsCDP8.9, CDP8.9,OsGLP12-3, OsCDP12.3, CDP12.3,OsGLP8-12, OsCDP8.12, CDP8.12,OsGLP3-8, OsCDP3.13, CDP3.13,OsGLP8-6, OsCDP8.6, CDP8.6,OsGLP2-4, OsGLP2-1, GLP2-1, OsCDP2.3, CDP2.3,OsGLP8-13, OsCDP8.13, CDP8.13,OsGER4, OsGLP1-2, GLP1-2, OsGLP1-1, GLP1-1, OsCDP1.2, CDP1.2,OsGLP5-1,OsGLP8-5, OsCDP8.5, CDP8.5,OsGLP3-2, OsCDP3.4, CDP3.4,OsGLP3-1, OsCDP3.1, CDP3.1,OsGLP1-3, OsGLP1-2, GLP1-2, OsCDP1.3, CDP1.3,OsGLP1-5, OsGLP1-4, GLP1-4, OsCDP1.4, CDP1.4,OsGLP11-1, OsCDP11.1, CDP11.1
43666	27677631	Sun B., Zhan X.D., Lin Z.C., Wu W.X., Yu P., Zhang Y.X., Sun L.P., Cao L.Y., Cheng S.H.	Fine mapping and candidate gene analysis of qHD5, a novel major QTL with pleiotropism for yield-related traits in rice (Oryza sativa L.).	Theor. Appl. Genet.	130(1)	247-258	2017	RSR1	AP2/EREBP#090, AP2/EREBP90, OsTOE1, TOE1, qHD5, AP2-1, AP2/EREBP/RSR1, OsRSR1, DLN130, DLN130a, DLN130b, OsDLN130, OsDLN130a, OsDLN130b
43667	27631432	Liu Q., Yang J., Yan S., Zhang S., Zhao J., Wang W., Yang T., Wang X., Mao X., Dong J., Zhu X., Liu B.	The Germin-like protein OsGLP2-1 enhances resistance to fungal blast and bacterial blight in rice.	Plant Mol. Biol.	92(4-5)	411-423	2016	GLP2-4	OsGLP2-4, OsGLP2-1, GLP2-1, OsCDP2.3, CDP2.3
43668	27677460	Yang X., Nian J., Xie Q., Feng J., Zhang F., Jing H., Zhang J., Dong G., Liang Y., Peng J., Wang G., Qian Q., Zuo J.	Rice Ferredoxin-Dependent Glutamate Synthase Regulates Nitrogen-Carbon Metabolomes and Is Genetically Differentiated between japonica and indica Subspecies.	Mol Plant	9(11)	1520-1534	2016	ABC1	OsABC1, SPL32, OsSPL32, OsGLU, OsFd-GOGAT, Fd-GOGAT, ABC1/ OsFd-GOGAT 
43669	27638689	Liu J., Shen J., Xu Y., Li X., Xiao J., Xiong L.	Ghd2, a CONSTANS-like gene, confers drought sensitivity through regulation of senescence in rice.	J. Exp. Bot.	67(19)	5785-5798	2016	ASN1,GF14C,BBX8,RCCR1,NYC4,KAT1,NAC58,GID2,ICL,NYC3,GF14B,RCCR2,GLN1;2,SIP5,FLO4,EAS1 ,NYC1,MS,SGR	OsASN1, OsAS1, AS1,GF14c, OsGF14c, 14-3-3c,OsBBX8, OsK, OsCCT09, OsGhd2, OsK/Ghd2, CCT09, Ghd2,OsRCCR1, OsRCCR, RCCR,OsNYC4, THF1, OsTHF1,OsI57, I57, OsKAT1, OsACAA1, ACAA1,OsNAP, NAP, ONAC058, ONAC58, Os PS1, PS1, OsCTb1, CTb1,gid2, GF14e, OsGF14e, OsGID2, 14-3-3e,OsEnS-107, EnS-107, OsI85, I85, OsICL, Osl85, l43, Osl43, OsL85,nyc3, OsNYC3, PPH,GF14b, OsGF14b, 14-3-3b,OsRCCR2, OsRCCR1, RCCR1,OsGLN1;2, GSr, RGS8, OsGS1;2, GS1;2, GS1, OsGS1-2, GS1-2, OsGS1.2, GS1.2,OsARID3, ARID3, OsSIP5 ,FLO4-4, flo4, flo4-2, flo4-3, ppdk, OsPPDK, PPDK1, CPDK1, PPDKB, OsPPDKB, cyOsPPDKB, OsPBDK, PBDK, osppdkb, PPD, cyPPDK, chPPDKB, chOsPPDKB,OsPAO, PAO, OsACD1, ACD1, OsEAS1, RCD2, OsRCD2,nyc1, OsNYC1,MLS, OsMLS, OsMS, OsMST, MST,sgr(t), sgr, OsSGR, OsSgr, SGR1, OsSGR1
43670	27760723	Wang D., Liu H., Zhai G., Wang L., Shao J., Tao Y.	osptac2 encodes a pentatricopeptide repeat protein and regulates rice chloroplast development.	J Genet Genomics	43(10)	601-608	2016	pTAC2	OspTAC2
43671	27729915	Nguyen V.N., Vo K.T., Park H., Jeon J.S., Jung K.H.	A Systematic View of the MLO Family in Rice Suggests Their Novel Roles in Morphological Development, Diurnal Responses, the Light-Signaling Pathway, and Various Stress Responses.	Front Plant Sci	7	1413	2016	CML16,MLO_,CML28,MLO_,MLO_,MLO_,CAM61,CML24,MLO_,MLO_,DXR,MLO_,MLO_,MLO_,MLO_,MLO_,MLO_	OsCML16,OsMLO4, MLO4,OsCML28,OsMLO12, MLO12,OsMLO9, MLO9,OsMLO5, OsMLO2,CaM61, OsCaM61, OsCML1, OsCML1d,OsCML24,OsMLO2, OsMLO3, OsMlo2, MLO2, Mlo2, Mlo, MLO3,OsMLO6, OsMLO1, OsMlo1, Mlo, OsMlo-1, Mlo1, MLO6,OsDXR, OsIspC, IspC,OsMLO7, MLO7,OsMLO4, OsMLO1, MLO1,OsMLO5, MLO5,OsMLO10, MLO10,OsMLO8, MLO8,OsMLO11, MLO11
43672	27581936	Singh S., Singh A., Nandi A.K.	The rice OsSAG12-2 gene codes for a functional protease that negatively regulates stress-induced cell death.	J. Biosci.	41(3)	445-53	2016	SAG12-2	CP, OsSAG12-2
43673	27795673	Yang R., Bai J., Fang J., Wang Y., Lee G., Piao Z.	A single amino acid mutation of OsSBEIIb contributes to resistant starch accumulation in rice.	Breed. Sci.	66(4)	481-489	2016	SBE3	SBEIII*, SBEIII, Sbe3, RBE3, QEIIa, QEIIA, BEIIb, BEIIB, SBEIIb, OsBEIIb, sbe3, SBE III, OsSBEIIb, SBEIIb
43674	27639962	Zeng Z., Xiong F., Yu X., Gong X., Luo J., Jiang Y., Kuang H., Gao B., Niu X., Liu Y.	Overexpression of a glyoxalase gene, OsGly I, improves abiotic stress tolerance and grain yield in rice (Oryza sativa L.).	Plant Physiol. Biochem.	109	62-71	2016		
43675	27998028	Lo S.F., Ho T.D., Liu Y.L., Jiang M.J., Hsieh K.T., Chen K.T., Yu L.C., Lee M.H., Chen C.Y., Huang T.P., Kojima M., Sakakibara H., Chen L.J., Yu S.M.	Ectopic expression of specific GA2 oxidase mutants promotes yield and stress tolerance in rice.	Plant Biotechnol. J.			2016		
43676	28029738	Guseman J.M., Webb K., Srinivasan C., Dardick C.	DRO1 influences root system architecture in Arabidopsis and Prunus species.	Plant J.			2016		
43677	28034842	Hongyu Z., Xiaoyun C., Feixue H., Yiyi W., Tingkai W., Yutong L., Dingqian Y., Hongkai Z., Yao F., Xiangyang Z., Wenli L., Xianjun W.	Effects of genome doubling on expression of genes regulating grain size.in rice.	Yi Chuan	38(12)	1102-1111	2016		
43678	27940610	Sun C., Hu Z., Zheng T., Lu K., Zhao Y., Wang W., Shi J., Wang C., Lu J., Zhang D., Li Z., Wei C.	RPAN: rice pan-genome browser for ?3000 rice genomes.	Nucleic Acids Res.			2016		
43679	27904465	Kang I.J., Kang M.H., Noh T.H., Shim H.K., Shin D.B., Heu S.	Simultaneous Detection of Three Bacterial Seed-Borne Diseases in Rice Using Multiplex Polymerase Chain Reaction.	Plant Pathol. J.	32(6)	575-579	2016		
43680	28019048	Todaka D., Zhao Y., Yoshida T., Kudo M., Kidokoro S., Mizoi J., Kodaira K.S., Takebayashi Y., Kojima M., Sakakibara H., Toyooka K., Sato M., Fernie A.R., Shinozaki K., Yamaguchi-Shinozaki K.	Temporal and spatial changes in gene expression, metabolite accumulation and phytohormone content in rice seedlings grown under drought stress conditions.	Plant J.			2016		
43681	28018418	Liu M., Lu S.	Plastoquinone and Ubiquinone in Plants: Biosynthesis, Physiological Function and Metabolic Engineering.	Front Plant Sci	7	1898	2016		
43682	28004781	Ling H., Zeng X., Guo S.	Functional insights into the late embryogenesis abundant (LEA) protein family from Dendrobium officinale (Orchidaceae) using an Escherichia coli system.	Sci Rep	6	39693	2016		
43683	27936403	Geng A., Wang X., Wu L., Wang F., Chen Y., Yang H., Zhang Z., Zhao X.	Arsenic accumulation and speciation in rice grown in arsanilic acid-elevated paddy soil.	Ecotoxicol. Environ. Saf.	137	172-178	2017		
43684	27997534	Gouil Q., Baulcombe D.C.	DNA Methylation Signatures of the Plant Chromomethyltransferases.	PLoS Genet.	12(12)	e1006526	2016		
43685	27905090	Luo Y., Ma T., Zhang A., Ong K.H., Li Z., Yang J., Yin Z.	Marker-assisted breeding of the rice restorer line Wanhui 6725 for disease resistance, submergence tolerance and aromatic fragrance.	Rice (N Y)	9(1)	66	2016		
43686	28008334	Zhang Y., Zhao J., Li Y., Yuan Z., He H., Yang H., Qu H., Ma C., Qu S.	Transcriptome Analysis Highlights Defense and Signaling Pathways Mediated by Rice Pi21 Gene with Partial Resistance to Magnaporthe oryzae.	Front Plant Sci	7	1834	2016		
43687	28028166	Teo C.J., Takahashi K., Shimizu K., Shimamoto K., Taoka K.I.	Potato Tuber Induction is Regulated by Interactions Between Components of a Tuberigen Complex.	Plant Cell Physiol.			2016		
43688	27978435	You Q., Zhai K., Yang D., Yang W., Wu J., Liu J., Pan W., Wang J., Zhu X., Jian Y., Liu J., Zhang Y., Deng Y., Li Q., Lou Y., Xie Q., He Z.	An E3?Ubiquitin Ligase-BAG Protein Module Controls Plant Innate Immunity and Broad-Spectrum disease resistance.	Cell Host Microbe	20(6)	758-769	2016	AOS2,JAR1,PR10A,PR4,CEBIP,EBR1,PAL1,_,_,_,_,HOX5,_,_,EIP8,_,_,CHT1,BAG4,_,CHT4,_	OsAOS2, CYP74A2, OsAOS, OsAOS1,OsJAR1, OsGH3.5, GH3.5, OsGH3-5, GH3-5,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsPR4, OsPR4a, PR4a, OsPR-4,CEBiP, Os-LYP1, LYP1, OsCEBiP,OsRFP, RFP, OsEBR1,  OsRING398, RING398,OsPAL, Pal1*, Pal1, PAL, Pal_1, PalI, PAL2, OsPAL01, PAL01, OSPAL, CP-1, GP-1, OsPAL1, PAL3, OsPAL3,EIP3,EIP7,SIP1, EIP5,PR5,Oshox5, OsHox5, EIP9, OsHDZ25, OsHDZIP25, HDZ25, HDZIP25,  OsHDZ26, OsHDZIP26, HDZ26, HDZIP26,OsPAL02, PAL02, OsPAL5, PAL5, OsPAL2. PAL2, OsPAL1,EIP10,OsEIP8, OsVOZ1, VOZ1 ,EIP2,EIP6,Cht1*(Chi1), Ch16, Cht1, CHT-1, CH16, RC24, OsChia1a, OsChia1, Chi1, Cht1*, Chi-1, Cht-1, Cht1, RCC1, OsCht-1, PR3, OsPR3,OsBAG4, EIP1, OsEIP1,EIP4,Cht4(t)*(Chi4), Chi4, Cht4, OsChia2b, Chi-4, CHIT2, OsCHIT2, PR3, OsPR3,EIP11
43689	28035023	Xuan Y.H., Duan F.Y., Je B.I., Kim C.M., Li T.Y., Liu J.M., Park S.J., Cho J.H., Kim T.H., von Wiren N., Han C.D.	Related to ABI3/VP1-Like 1 (RAVL1) regulates brassinosteroid-mediated activation of AMT1;2 in rice (Oryza sativa).	J. Exp. Bot.			2016		
43690	27576685	Zhu D., Kang H., Li Z., Liu M., Zhu X., Wang Y., Wang D., Wang Z., Liu W., Wang G.L.	A Genome-Wide Association Study of Field Resistance to Magnaporthe Oryzae in Rice.	Rice (N Y)	9(1)	44	2016		
43691	27910002	Wu L., Wu J., Liu Y., Gong X., Xu J., Lin D., Dong Y.	The Rice Pentatricopeptide Repeat Gene TCD10 is Needed for Chloroplast Development under Cold Stress.	Rice (N Y)	9(1)	67	2016	TCD10	OsTCD10
43692	28028232	Os?s-Ruiz M., Sakulkoo W., Littlejohn G.R., Martin-Urdiroz M., Talbot N.J.	Two independent S-phase checkpoints regulate appressorium-mediated plant infection by the rice blast fungus Magnaporthe oryzae.	Proc. Natl. Acad. Sci. U.S.A.			2016		
43693	27990152	Lv S., Wang Z., Yang X., Guo L., Qiu D., Zeng H.	Transcriptional Profiling of Rice Treated with MoHrip1 Reveal the Function of Protein Elicitor in Enhancement of Disease Resistance and Plant Growth.	Front Plant Sci	7	1818	2016		
43694	28025977	Charlesworth D.	Origins of rice cytoplasmic male sterility genes.	Cell Res.	27(1)	3-4	2017		
43695	28025485	Dou M., Fan S., Yang S., Huang R., Yu H., Feng X.	Overexpression of AmRosea1 gene Confers Drought and Salt Tolerance in Rice.	Int J Mol Sci	18(1)		2016		
43696	27959949	Xie Z., Shah F., Tu S., Xu C., Cao W.	Chinese Milk Vetch as Green Manure Mitigates Nitrous Oxide Emission from Monocropped Rice System in South China.	PLoS ONE	11(12)	e0168134	2016		
43697	27940306	Li J., Sun Y., Du J., Zhao Y., Xia L.	Generation of Targeted Point Mutations in Rice by a Modified CRISPR/Cas9 System.	Mol Plant			2016		
43698	27994188	Kumar V.A., Balachiranjeevi C.H., Naik S.B., Rambabu R., Rekha G., Harika G., Hajira S.K., Pranathi K., Vijay S., Anila M., Mahadevaswamy H.K., Kousik M., Yugander A., Aruna J., Hari Prasad AS., Madhav M.S., Laha G.S., Balachandran S.M., Prasad M.S., Babu V.R., Sundaram R.M.	Marker-assisted improvement of the elite restorer line of rice, RPHR-1005 for resistance against bacterial blight and blast diseases.	J. Genet.	95(4)	895-903	2016		
43699	27932049	Lu Y., Zhu J.K.	Precise Editing of a Target Base in the Rice Genome Using a Modified CRISPR/Cas9 System.	Mol Plant			2016		
43700	27976810	He Y., Zhang H., Sun Z., Li J., Hong G., Zhu Q., Zhou X., MacFarlane S., Yan F., Chen J.	Jasmonic acid-mediated defense suppresses brassinosteroid-mediated susceptibility to Rice black streaked dwarf virus infection in rice.	New Phytol.			2016	D2,COI1,CPD2,BZR1,AOS2,JIOSPR10,BHLH9,D61,JMT2,COI1B,DWARF4,HPL3,CPD1,LOX8,D11	d2, dwf2, CYP90D2, D2/CYP90D2, OsD2, SMG11, OsSMG11, D2/SMG11, OsD2a, OsD2b,OsCOI1a, OsCOI1, Os_F0728, COI1a, F0728,  OsFBL4, FBL4,OsCPD2, CYP90A4, CYP90A4/OsCPD2,OsBZR1, Os BZR1, OsBES1-6, BES1-6,OsAOS2, CYP74A2, OsAOS, OsAOS1,JIOsPR10, OsPR10, PR10, OsJiPR10, JiPR10, OsPR10c, PR10c,OsbHLH009, bHLH009, OsMYC2, MYC2,d61*, dwf42, d61, OsBRI1, OSBRI1, BRI1, Os BRI1, Osbri1, OsBRKq1, BRKq1,OsJMT1, JMT1, OsJMT2,OsCOI1b, COI1b, OsCOI1H, COI1H, OsFbox260, Fbox260, Os_F0646,  OsFBL23, FBL23, OsCOl-1, COl-1,OsDWARF4, osdwarf4, OsDWF4, DWF4, CYP90B2, OsCYP90B2, D4, OsD4,OsHPL3, CYP74B2, OsCYP74B2,OsCPD1, CYP90A3, CYP90A3/OsCPD1, CPD, OsCPD2, CPD2,OsLOX8, OsLOX9, LOX9, OsLOX2;3, LOX2;3, OsLOX2, OsLOX1, CM-LOX8,d11(d8), dwf10, d8, D11/CYP724B1, d11, CYP724B1, GNS4, OsD11, PMM1, OsPMM1, PMM1/D11, NBG4, OsCPB1, CPB1, CPB1/D11
43701	27905529	Endo A., Masafumi M., Kaya H., Toki S.	Efficient targeted mutagenesis of rice and tobacco genomes using Cpf1 from Francisella novicida.	Sci Rep	6	38169	2016		
43702	27929052	Xu X., Wu Z., Dong Y., Zhou Z., Xiong Z.	Effects of nitrogen and biochar amendment on soil methane concentration profiles and diffusion in a rice-wheat annual rotation system.	Sci Rep	6	38688	2016		
43703	27925226	Herzog M., Konnerup D., Pedersen O., Winkel A., Colmer T.D.	Leaf gas films contribute to rice (Oryza sativa) submergence tolerance during saline floods.	Plant Cell Environ.			2016		
43704	28012016	Zeng D.D., Qin R., Li M., Alamin M., Jin X.L., Liu Y., Shi C.H.	The Ferredoxin-dependent glutamate synthase (OsFd-GOGAT) participates in leaf senescence and the nitrogen remobilization in rice.	Mol. Genet. Genomics			2016		
43705	27917941	Francis A., Dhaka N., Bakshi M., Jung K.H., Sharma M.K., Sharma R.	Comparative phylogenomic analysis provides insights into TCP gene functions in Sorghum.	Sci Rep	6	38488	2016		
43706	28066479	Zhu F.Y., Chen M.X., Su Y.W., Xu X., Ye N.H., Cao Y.Y., Lin S., Liu T.Y., Li H.X., Wang G.Q., Jin Y., Gu Y.H., Chan W.L., Lo C., Peng X., Zhu G., Zhang J.	SWATH-MS Quantitative Analysis of Proteins in the Rice Inferior and Superior Spikelets during Grain Filling.	Front Plant Sci	7	1926	2016		
43707	27941309	Ikemoto M., Otsuka M., Thanh P.T., Phan P.D., Ishikawa R., Ishii T.	Gene interaction at seed-awning loci in the genetic background of wild rice.	Genes Genet. Syst.			2016		
43708	28006731	Chauhan R., Awasthi S., Tripathi P., Mishra S., Dwivedi S., Niranjan A., Mallick S., Tripathi P., Pande V., Tripathi R.D.	Selenite modulates the level of phenolics and nutrient element to alleviate the toxicity of arsenite in rice (Oryza sativa L.).	Ecotoxicol. Environ. Saf.	138	47-55	2016		
43709	28003004	Squeglia F., Berisio R., Shibuya N., Kaku H.	Defense against pathogens: Structural insights into the mechanism of chitin induced activation of innate immunity.	Curr. Med. Chem.			2016		
43710	27999987	Ye S., Yang W., Zhai R., Lu Y., Wang J., Zhang X.	Mapping and application of the twin-grain1 gene in rice.	Planta			2016	FON2	fon2, OsFON2, FON4, OsFON4, FON2/FON4, TG1
43711	28028608	Sasou A., Shigemitsu T., Morita S., Masumura T.	Accumulation of foreign polypeptides to rice seed protein body type I using prolamin portion sequences.	Plant Cell Rep.			2016		
43712	28005988	Wendt T., Holme I., Dockter C., Preu? A., Thomas W., Druka A., Waugh R., Hansson M., Braumann I.	HvDep1 Is a Positive Regulator of Culm Elongation and Grain Size in Barley and Impacts Yield in an Environment-Dependent Manner.	PLoS ONE	11(12)	e0168924	2016		
43713	27918246	Girija A.M., Kumar B.K., Mylavarapu M.B., Ramesh P., Vungarala S., Patel H.K., Sonti R.	Rice leaf transcriptional profiling suggests a functional interplay between Xanthomonas oryzae pv. oryzae lipopolysaccharide and extracellular polysaccharide in modulation of defense responses during infection.	Mol. Plant Microbe Interact.			2016		
43714	27990555	Tian L., Zhou X., Ma L., Xu S., Nasir F., Tian C.	Root-associated bacterial diversities of Oryza rufipogon and Oryza sativa and their influencing environmental factors.	Arch. Microbiol.			2016		
43715	28027007	Sun H., Tao J., Zhao Q., Xu G., Zhang Y.	Multiple roles of nitric oxide in root development and nitrogen uptake.	Plant Signal Behav		0	2016		
43716	27999965	Cao F., Fu M., Wang R., Cheng W., Zhang G., Wu F.	Genotypic-dependent effects of N fertilizer, glutathione, silicon, zinc, and selenium on proteomic profiles, amino acid contents, and quality of rice genotypes with contrasting grain Cd accumulation.	Funct. Integr. Genomics			2016		
43717	27994613	Liu J.M., Zhao J.Y., Lu P.P., Chen M., Guo C.H., Xu Z.S., Ma Y.Z.	The E-Subgroup Pentatricopeptide Repeat Protein Family in Arabidopsis thaliana and Confirmation of the Responsiveness PPR96 to Abiotic Stresses.	Front Plant Sci	7	1825	2016		
43718	28025342	Liu W.T., Yang C.C., Chen R.K., Jwo W.S., Wu C.W., Ting W.Y., Shung D.P., Liu C.C., Chen J.J.	RiceATM: a platform for identifying the association between rice agronomic traits and miRNA expression.	Database (Oxford)	2016		2016		
43719	27580728	Takaiwa F., Yang L., Maruyama N., Wakasa Y., Ozawa K.	Deposition mode of transforming growth factor-beta expressed in transgenic rice seed.	Plant Cell Rep.	35(12)	2461-2473	2016		
43720	27988364	Gong B.Q., Xue J., Zhang N., Xu L., Yao X., Yang Q.J., Yu Y., Wang H.B., Zhang D., Li J.F.	Rice Chitin Receptor OsCEBiP Is Not a Transmembrane Protein but Targets to Plasma Membrane via a GPI Anchor.	Mol Plant			2016		
43721	27957808	Wei X., Jiao G., Lin H., Sheng Z., Shao G., Xie L., Tang S., Xu Q., Hu P.	GRAIN INCOMPLETE FILLING 2 regulates grain filling and starch synthesis during rice caryopsis development.	J Integr Plant Biol			2016	AGPL2,AGPS2,AGPS1	OsAGPL2, osagpl2, APL2, OsAPL2, AGPiso, sh2, Sh2, GIF2, GAS1 ,OsAGPS2a, AGPS2A, AGPS2B, OsAGPS2, osagps2, APS2, APS2a, APS2b, AGPS2a, APGS2b, OsAGPS2b, AGPP, GAS8, OsAPS2, OsAPS2a, OsAPS2b,OsAGPS1, APS1, OsAPS1, AGPsma
43722	28013273	Nakamura Y., Kudo T., Terashima S., Saito M., Nambara E., Yano K.	CATchUP: A web database for spatiotemporally regulated genes.	Plant Cell Physiol.			2016		
43723	28008850	Liao J., Huang H., Meusnier I., Adreit H., Ducasse A., Bonnot F., Pan L., He X., Kroj T., Fournier E., Tharreau D., Gladieux P., Morel J.B.	Pathogen effectors and plant immunity determine specialization of the blast fungus to rice subspecies.	Elife	5		2016		
43724	28013174	Wang N., Xing Y., Lou Q., Feng P., Liu S., Zhu M., Yin W., Fang S., Lin Y., Zhang T., Sang X., He G.	Dwarf and short grain 1, encoding a putative U-box protein regulates cell division and elongation in rice.	J. Plant Physiol.	209	84-94	2016	ELF1	OsPUB31, PUB31, OsPUB75, PUB75, TUD1, OsTUD1, DSG1,  OsPUB75, PUB75
43725	28066455	Ma X., Xia H., Liu Y., Wei H., Zheng X., Song C., Chen L., Liu H., Luo L.	Transcriptomic and Metabolomic Studies Disclose Key Metabolism Pathways Contributing to Well-maintained Photosynthesis under the Drought and the Consequent drought-tolerance in Rice.	Front Plant Sci	7	1886	2016		
43726	28036378	Wang R., Fang N., Guan C., He W., Bao Y., Zhang H.	Characterization and Fine Mapping of a Blast Resistant Gene Pi-jnw1 from the japonica Rice Landrace Jiangnanwan.	PLoS ONE	11(12)	e0169417	2016	_	Pi-jnw1
43727	27976484	Koo J., Schnabel T., Liong S., Evitt N.H., Swartz J.R.	High-Throughput Screening of Catalytic H2 Production.	Angew. Chem. Int. Ed. Engl.			2016		
43728	28043782	Hu X., Wang C., Liu Q., Fu Y., Wang K.	Targeted mutagenesis in rice using CRISPR-Cpf1 system.	J Genet Genomics			2016		
43729	28018389	Ren D., Rao Y., Leng Y., Li Z., Xu Q., Wu L., Qiu Z., Xue D., Zeng D., Hu J., Zhang G., Zhu L., Gao Z., Chen G., Dong G., Guo L., Qian Q.	Regulatory Role of OsMADS34 in the Determination of Glumes Fate, grain yield, and Quality in Rice.	Front Plant Sci	7	1853	2016		
43730	28058034	Di Pierro F., Putignano P., Ferrara T., Raiola C., Rapacioli G., Villanova N.	Retrospective analysis of the effects of a highly standardized mixture of Berberis aristata, Silybum marianum, and monacolins K and KA in patients with dyslipidemia.	Clin Pharmacol	9	1-7	2017		
43731	27943653	Wei Q., Mu X.C., Wu S.F., Wang L.X., Gao C.F.	Cross-resistance to three phenylpyrazole insecticides and A2'N mutation detection of GABA receptor subunit in fipronil-resistant Laodelphax striatellus (Hemiptera: Delphacidae).	Pest Manag. Sci.			2016		
43732	27729434	Cui Y., Song B.K., Li L.F., Li Y.L., Huang Z., Caicedo A.L., Jia Y., Olsen K.M.	Little White Lies: Pericarp Color Provides Insights into the Origins and Evolution of Southeast Asian Weedy Rice.	G3 (Bethesda)	6(12)	4105-4114	2016		
43733	27973585	Ning D., Liang Y., Liu Z., Xiao J., Duan A.	Impacts of Steel-Slag-Based Silicate Fertilizer on Soil Acidity and Silicon Availability and Metals-Immobilization in a Paddy Soil.	PLoS ONE	11(12)	e0168163	2016		
43734	28036107	Voss-Fels KP., Qian L., Parra-Londono S., Uptmoor R., Frisch M., Keeble-Gagn?re G., Appels R., Snowdon R.J.	Linkage drag constrains the roots of modern wheat.	Plant Cell Environ.			2016		
43735	28018384	Imam J., Mandal N.P., Variar M., Shukla P.	Allele Mining and Selective Patterns of Pi9 Gene in a Set of Rice Landraces from India.	Front Plant Sci	7	1846	2016		
43736	27922088	He X., Chen L., Chen X., Yu H., Peng L., Han B.	Analysis of four toxic metals in a single rice seed by matrix solid phase dispersion -inductively coupled plasma mass spectrometry.	Sci Rep	6	38472	2016		
43737	27749149	Pan X., Wu J., Xu S., Duan Y., Zhou M.	CatB is Critical for Total Catalase Activity and Reduces Bactericidal Effects of Phenazine-1-Carboxylic Acid on Xanthomonas oryzae pv. oryzae and X. oryzae pv. oryzicola.	Phytopathology	107(2)	163-172	2017		
43738	28066483	Danisman S.	TCP Transcription Factors at the Interface between Environmental Challenges and the Plant's Growth Responses.	Front Plant Sci	7	1930	2016		
43739	27959472	Gregorio G.V., Gonzales M.L., Dans L.F., Martinez E.G.	Polymer-based oral rehydration solution for treating acute watery diarrhoea.	Cochrane Database Syst Rev	12	CD006519	2016		
43740	27904462	Wu J., Kim S.G., Kang K.Y., Kim J.G., Park S.R., Gupta R., Kim Y.H., Wang Y., Kim S.T.	Overexpression of a Pathogenesis-Related Protein 10 Enhances Biotic and Abiotic Stress Tolerance in Rice.	Plant Pathol. J.	32(6)	552-562	2016		
43741	28040774	Niehaus E.M., M?nsterk?tter M., Proctor R.H., Brown D.W., Sharon A., Idan Y., Oren-Young L., Sieber C.M., Nov?k O., P?n??k A., Tarkowsk? D., Hromadov? K., Freeman S., Maymon M., Elazar M., Youssef S.A., El-Shabrawy ES., Shalaby A.B., Houterman P., Brock N.L., Burkhardt I., Tsavkelova E.A., Dickschat J.S., Galuszka P., G?ldener U., Tudzynski B.	Comparative "Omics" of the Fusarium fujikuroi Species Complex Highlights Differences in Genetic Potential and Metabolite Synthesis.	Genome Biol Evol	8(11)	3574-3599	2016		
43742	27907079	Tayi L., Maku R.V., Patel H.K., Sonti R.V.	Identification of Pectin Degrading Enzymes Secreted by Xanthomonas oryzae pv. oryzae and Determination of Their Role in Virulence on Rice.	PLoS ONE	11(12)	e0166396	2016		
43743	27910910	Ariani P., Regaiolo A., Lovato A., Giorgetti A., Porceddu A., Camiolo S., Wong D., Castellarin S., Vandelle E., Polverari A.	Genome-wide characterisation and expression profile of the grapevine ATL ubiquitin ligase family reveal biotic and abiotic stress-responsive and development-related members.	Sci Rep	6	38260	2016		
43744	27905546	Cheng X.J., He B., Chen L., Xiao S.Q., Fu J., Chen Y., Yu T.Q., Cheng Z.Q., Feng H.	Transcriptome analysis confers a complex disease resistance network in wild rice Oryza meyeriana against Xanthomonas oryzae pv. oryzae.	Sci Rep	6	38215	2016		
43745	27992591	Pang Y., Ali J., Wang X., Franje N.J., Revilleza J.E., Xu J., Li Z.	Relationship of Rice Grain Amylose, gelatinization temperature and Pasting Properties for Breeding Better Eating and Cooking Quality of Rice Varieties.	PLoS ONE	11(12)	e0168483	2016		
43746	28018373	Ata-Ul-Karim ST., Cao Q., Zhu Y., Tang L., Rehmani M.I., Cao W.	Non-destructive Assessment of Plant Nitrogen Parameters Using Leaf Chlorophyll Measurements in Rice.	Front Plant Sci	7	1829	2016		
43747	28008549	Uzuhashi S., Hata K., Matsuura S., Tojo M.	Globisporangium oryzicola sp. nov., causing poor seedling establishment of directly seeded rice.	Antonie Van Leeuwenhoek			2016		
43748	27910900	Johnson-Beebout SE., Goloran J.B., Rubianes F.H., Jacob J.D., Castillo O.B.	Zn uptake behavior of rice genotypes and its implication on grain Zn biofortification.	Sci Rep	6	38301	2016		
43749	27849025	Jogawat A., Vadassery J., Verma N., Oelm?ller R., Dua M., Nevo E., Johri A.K.	PiHOG1, a stress regulator MAP kinase from the root endophyte fungus Piriformospora indica, confers salinity stress tolerance in rice plants.	Sci Rep	6	36765	2016		
43750	27762074	Zhao S., Zhao L., Liu F., Wu Y., Zhu Z., Sun C., Tan L.	NARROW AND ROLLED LEAF 2 regulates leaf shape, male fertility, and seed size in rice.	J Integr Plant Biol	58(12)	983-996	2016	RL14,SRL2,TDR,4CL5,GAMYB,MTR1,MS2,CYP704B2,CYP703A3,GH2,_,4CL3	2-ODD24, Os2-ODD24, 2ODD24, Os2ODD24, OsRL14,NRL2, OsSRL2, OsNRL2,tdr, OsbHLH005, bHLH005, OsbHLH5, bhlh5, TDR1, OsTDR, OsTDR1, OsMYC5, MYC5,Os4CL5, 4CL3, Os4CL3,OsGAMYB, GAM1, OsGAMyb, Os-MYBGA, Os GAMYB, OsMYBGA, MYBGA, Os2R_MYB15, 2R_MYB15 ,OsMTR1,OsMS2, OsDPW, DPW, DPW1, OsDPW1, OsFAR2, FAR2,OsCYP704B2,OsCYP703A3,gh2, CAD2, CAD, OsCAD2, OsGH2 ,OsPAL07, OsPAL, PAL07, OsPAL6, PAL6, PAL1, OsPAL7, PAL7,Os4CL3, Os4CL2, Os4CL, 4CL2, 4CL
43751	27882529	Yun Y.T., Chung C.T., Lee Y.J., Na H.J., Lee J.C., Lee S.G., Lee K.W., Yoon Y.H., Kang J.W., Lee H.S., Lee J.Y., Ahn S.N.	QTL Mapping of Grain Quality Traits Using Introgression Lines Carrying Oryza rufipogon Chromosome Segments in Japonica Rice.	Rice (N Y)	9(1)	62	2016		
43752	27862521	Maruyama K., Ogata T., Kanamori N., Yoshiwara K., Goto S., Yamamoto Y.Y., Tokoro Y., Noda C., Takaki Y., Urawa H., Iuchi S., Urano K., Yoshida T., Sakurai T., Kojima M., Sakakibara H., Shinozaki K., Yamaguchi-Shinozaki K.	Design of an optimal promoter involved in the heat-induced transcriptional pathway in Arabidopsis, soybean, rice, and maize.	Plant J.			2016		
43753	27848161	Wang D., Liu J., Li C., Kang H., Wang Y., Tan X., Liu M., Deng Y., Wang Z., Liu Y., Zhang D., Xiao Y., Wang G.L.	Genome-wide Association Mapping of cold tolerance Genes at the Seedling Stage in Rice.	Rice (N Y)	9(1)	61	2016		
43754	27814357	Dong H., Zhao H., Xie W., Han Z., Li G., Yao W., Bai X., Hu Y., Guo Z., Lu K., Yang L., Xing Y.	A Novel tiller angle Gene, TAC3, together with TAC1 and D2 Largely Determine the Natural Variation of tiller angle in Rice Cultivars.	PLoS Genet.	12(11)	e1006412	2016	TAC3,D2,SPK	OsTAC3, OsEPFL3, EPFL3,d2, dwf2, CYP90D2, D2/CYP90D2, OsD2, SMG11, OsSMG11, D2/SMG11, OsD2a, OsD2b,Spk(t), Spk(t)*), Spk, OsTAC1, TAC1, qTAC9 
43755	27933072	Yang D., Ye X., Zheng X., Cheng C., Ye N., Huang F.	Development and Evaluation of Chromosome Segment Substitution Lines Carrying Overlapping Chromosome Segments of the Whole Wild Rice Genome.	Front Plant Sci	7	1737	2016		
43756	27902802	Cheng J., He Y., Zhan C., Yang B., Xu E., Zhang H., Wang Z.	Identification and Characterization of Quantitative Trait Loci for Shattering in Rice Landrace Jiucaiqing from Taihu Lake Valley, China.	Plant Genome	9(3)		2016		
43757	27881984	Sood S., Kumar A., Babu B.K., Gaur V.S., Pandey D., Kant L., Pattnayak A.	Gene Discovery and Advances in Finger Millet [Eleusine coracana (L.) Gaertn.] Genomics-An Important Nutri-Cereal of Future.	Front Plant Sci	7	1634	2016		
43758	27877189	Wang W., Qin Q., Sun F., Wang Y., Xu D., Li Z., Fu B.	Genome-Wide Differences in DNA Methylation Changes in Two Contrasting Rice Genotypes in Response to Drought Conditions.	Front Plant Sci	7	1675	2016		
43759	27965705	Zhao J., Yang Y., Yang D., Cheng Y., Jiao M., Zhan G., Zhang H., Wang J., Zhou K., Huang L., Kang Z.	Characterization and Genetic Analysis of Rice Mutant crr1 Exhibiting Compromised Non-host Resistance to Puccinia striiformis f. sp. tritici (Pst).	Front Plant Sci	7	1822	2016	CRR1	
43760	27965688	Pinel-Galzi A., Dubreuil-Tranchant C., H?brard E., Mariac C., Ghesqui?re A., Albar L.	Mutations in Rice yellow mottle virus polyprotein P2a Involved in RYMV2 Gene Resistance Breakdown.	Front Plant Sci	7	1779	2016		
43761	27891136	Guo W., Chen T., Hussain N., Zhang G., Jiang L.	Characterization of Salinity Tolerance of Transgenic Rice Lines Harboring HsCBL8 of Wild Barley (Hordeum spontanum) Line from Qinghai-Tibet Plateau.	Front Plant Sci	7	1678	2016		
43762	27841331	Takeuchi J., Okamoto M., Mega R., Kanno Y., Ohnishi T., Seo M., Todoroki Y.	Abscinazole-E3M, a practical inhibitor of abscisic acid 8'-hydroxylase for improving drought tolerance.	Sci Rep	6	37060	2016		
43763	27900550	Komiya R.	Biogenesis of diverse plant phasiRNAs involves an miRNA-trigger and Dicer-processing.	J. Plant Res.	130(1)	17-23	2017		
43764	27875742	Ma X., Sun X., Li C., Huan R., Sun C., Wang Y., Xiao F., Wang Q., Chen P., Ma F., Zhang K., Wang P., Deng X.	Map-based cloning and characterization of the novel yellow-green leaf gene YS83 in rice (Oryza sativa).	Plant Physiol. Biochem.	111	1-9	2016		
43765	27717469	Saensuk C., Wanchana S., Choowongkomon K., Wongpornchai S., Kraithong T., Imsabai W., Chaichoompu E., Ruanjaichon V., Toojinda T., Vanavichit A., Arikit S.	De novo transcriptome assembly and identification of the gene conferring a "pandan-like" aroma in coconut (Cocos nucifera L.).	Plant Sci.	252	324-334	2016		
43766	27901067	Cord-Landwehr S., Melcher R.L., Kolkenbrock S., Moerschbacher B.M.	A chitin deacetylase from the endophytic fungus Pestalotiopsis sp. efficiently inactivates the elicitor activity of chitin oligomers in rice cells.	Sci Rep	6	38018	2016		
43767	27889940	Brozynska M., Copetti D., Furtado A., Wing R.A., Crayn D., Fox G., Ishikawa R., Henry R.J.	Sequencing of Australian wild rice genomes reveals ancestral relationships with domesticated rice.	Plant Biotechnol. J.			2016		
43768	27865844	Park J.H., Jung S.	Perturbations of carotenoid and tetrapyrrole biosynthetic pathways result in differential alterations in chloroplast function and plastid signaling.	Biochem. Biophys. Res. Commun.			2016		
43769	27825304	Yu C., Wang N., Wu M., Tian F., Chen H., Yang F., Yuan X., Yang C.H., He C.	OxyR-regulated catalase CatB promotes the virulence in rice via detoxifying hydrogen peroxide in Xanthomonas oryzae pv. oryzae.	BMC Microbiol.	16(1)	269	2016		
43770	27895204	Ying Y., Yue W., Wang S., Li S., Wang M., Zhao Y., Wang C., Mao C., Whelan J., Shou H.	Two h-Type Thioredoxins Interact with the E2 Ubiquitin Conjugase PHO2 to Fine-Tune Phosphate Homeostasis in Rice.	Plant Physiol.	173(1)	812-824	2017		
43771	27894970	Zhang L., Liu B., Zheng G., Zhang A., Li R.	Genome-wide characterization of the SiDof gene family in foxtail millet (Setaria italica).	BioSystems	151	27-33	2016		
43772	27874312	Kang D.Y., S P N., Darvin P., Joung Y.H., Byun H.J., Do C.H., Park K.D., Park M.N., Cho K.H., Yang Y.M.	Momilactone B Inhibits Ketosis In Vitro by Regulating the ANGPTL3-LPL Pathway and Inhibiting HMGCS2.	Anim. Biotechnol.		1-9	2016		
43773	27819540	He W., Fang N., Wang R., Wu Y., Zeng G., Guan C., Chen H., Huang J., Wang J., Bao Y., Zhang H.	Fine Mapping of a New Race-Specific Blast Resistance Gene, Pi-hk2, in Japonica Heikezijing from Taihu Region of China.	Phytopathology	107(1)	84-91	2017	PIHK2	Pi-hk2
43774	27809780	Ku L., Tian L., Su H., Wang C., Wang X., Wu L., Shi Y., Li G., Wang Z., Wang H., Song X., Dou D., Ren Z., Chen Y.	Dual functions of the ZmCCT-associated quantitative trait locus in flowering and stress responses under long-day conditions.	BMC Plant Biol.	16(1)	239	2016		
43775	27873004	Wang X., Fu Z., Chen X., Peng C., Xu X., Wei W., Li F., Xu J.	Use of a novel metal indicator to judge loop-mediated isothermal amplification for detecting the 35S promoter.	Anal Bioanal Chem			2016		
43776	27853319	Wei H., Feng F., Lou Q., Xia H., Ma X., Liu Y., Xu K., Yu X., Mei H., Luo L.	Genetic determination of the enhanced drought resistance of rice maintainer HuHan2B by pedigree breeding.	Sci Rep	6	37302	2016		
43777	27900537	Ahmed M.M., Bian S., Wang M., Zhao J., Zhang B., Liu Q., Zhang C., Tang S., Gu M., Yu H.	RNAi-mediated resistance to rice black-streaked dwarf virus in transgenic rice.	Transgenic Res.			2016		
43778	27819727	Vighi I.L., Benitez L.C., do Amaral MN., Auler P.A., Moraes G.P., Rodrigues G.S., da Maia LC., Pinto L.S., Braga E.J.	Changes in gene expression and Catalase activity in Oryza sativa L. under abiotic stress.	Genet. Mol. Res.	15(4)		2016		
43779	27974904	Hwang S.H., Li H.M., Lim S.S., Wang Z., Hong J.S., Huang B.	Evaluation of a Standardized Extract from Morus alba against alpha-glucosidase Inhibitory Effect and Postprandial Antihyperglycemic in Patients with Impaired Glucose Tolerance: A Randomized Double-Blind Clinical Trial.	Evid Based Complement Alternat Med	2016	8983232	2016		
43780	27858291	Illana A., Marconi M., Rodr?guez-Romero J., Xu P., Dalmay T., Wilkinson M.D., Ayll?n M?., Sesma A.	Molecular characterization of a novel ssRNA ourmia-like virus from the rice blast fungus Magnaporthe oryzae.	Arch. Virol.			2016		
43781	27837430	Liu S., Gao H., Wu X., Fang Q., Chen L., Zhao F.J., Huang C.F.	Isolation and Characterization of an Aluminum-resistant Mutant in Rice.	Rice (N Y)	9(1)	60	2016		
43782	27837098	Fukushima S., Mori M., Sugano S., Takatsuji H.	Transcription Factor WRKY62 Plays a Role in Pathogen Defense and Hypoxia-Responsive Gene Expression in Rice.	Plant Cell Physiol.	57(12)	2541-2551	2016	CPS4,CPS2,WRKY45,PR1B,WRKY62,DPF,PR10A,PR1A,ADH2,ERF68,_	OsCPS4, CYC1, OsCYC1, OsCyc1, cpsl3, OsCPSL3, OsCPSsyn, OsCyc1/OsCPS4, OsTPS15, Os-CPS4, TPS11, OsTPS11,OsCPS2, cps2, OsCPS2ent, CYC2, OsCyc2, OsCYC2, OsCPSL1, cpsl1, OsCyc2/OsCPS2, OsTPS7, Os-CPS2, TPS13, OsTPS13,OsWRKY45, OsWRKY45-1, OsWRKY45-2, WRKY45-1, WRKY45-2,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1, OsPR1a, PR1a,OsWRKY62, OsWRKY62.1, OsWRKY62.2, XB10, OsWRKY62-1, OsWRKY62-2,OsbHLH025, bHLH025, bHLH25,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1, OsPR1b, PR1alpha, OsPR1alpha,Adh2*, Adh2, OsADH2,OsERF#068, OsERF068, OsERF68, AP2/EREBP#003, AP2/EREBP3, ERF2,
43783	27811915	Ji Z., Ji C., Liu B., Zou L., Chen G., Yang B.	Interfering TAL effectors of Xanthomonas oryzae neutralize R-gene-mediated plant disease resistance.	Nat Commun	7	13435	2016		
43784	27881987	Serfling A., Templer S.E., Winter P., Ordon F.	Microscopic and Molecular Characterization of the Prehaustorial Resistance against Wheat Leaf Rust (Puccinia triticina) in Einkorn (Triticum monococcum).	Front Plant Sci	7	1668	2016		
43785	27876142	Li N., Chen J., Shi Y.P.	Magnetic polyethyleneimine functionalized reduced graphene oxide as a novel magnetic solid-phase extraction adsorbent for the determination of polar acidic herbicides in rice.	Anal. Chim. Acta	949	23-34	2017		
43786	27889499	Li C., Tang Z., Wei J., Qu H., Xie Y., Xu G.	The OsAMT1.1 gene functions in ammonium uptake and ammonium-potassium homeostasis over low and high ammonium concentration ranges.	J Genet Genomics	43(11)	639-649	2016		
43787	27878453	Auler P.A., Benitez L.C., do Amaral MN., Vighi I.L., Dos Santos Rodrigues G., da Maia LC., Braga E.J.	Evaluation of stability and validation of reference genes for RT-qPCR expression studies in rice plants under water deficit.	J. Appl. Genet.			2016		
43788	27817046	Nam H.J., Kwon J.Y., Choi H.Y., Kang S.H., Jung H.S., Kim D.I.	Production and Purification of Recombinant Glucocerebrosidase in Transgenic Rice Cell Suspension Cultures.	Appl. Biochem. Biotechnol.			2016		
43789	27835850	Tovuu A., Zulfugarov I.S., Wu G., Kang I.S., Kim C., Moon B.Y., An G., Lee C.H.	Rice mutants deficient in omega-3 fatty acid desaturase (FAD8) fail to acclimate to cold temperatures.	Plant Physiol. Biochem.	109	525-535	2016		
43790	27815966	Smoczynska A., Szweykowska-Kulinska Z.	MicroRNA-mediated regulation of flower development in grasses.	Acta Biochim. Pol.	63(4)	687-692	2016		
43791	27815670	Qian W., Wu C., Fu Y., Hu G., He Z., Liu W.	Novel rice mutants overexpressing the brassinosteroid catabolic gene CYP734A4.	Plant Mol. Biol.			2016		
43792	27900723	Fang N., Xu R., Huang L., Zhang B., Duan P., Li N., Luo Y., Li Y.	SMALL GRAIN 11 Controls grain size, Grain Number and grain yield in Rice.	Rice (N Y)	9(1)	64	2016	D61,ILI6,D2,BU1,ILI5,PIL16,GW7	d61*, dwf42, d61, OsBRI1, OSBRI1, BRI1, Os BRI1, Osbri1, OsBRKq1, BRKq1,ILI6, OsILI6, PGL1, OsPGL1,d2, dwf2, CYP90D2, D2/CYP90D2, OsD2, SMG11, OsSMG11, D2/SMG11, OsD2a, OsD2b,ILI4, OsILI4 , OsBU1, BU1/ILI4, OsbHLH172, bHLH172,ILI5, OsILI5, PGL2, OsPGL2, Os170, OsBUL1, BUL1, ILI5/PGL2, OsbHLH170, bHLH170,APG, OsPIL16, OsbHLH106,GL7, OsGL7, OsGW7, qGW7, qGL7, SLG7, GL7/GW7/SLG7, qPY7, GL7/SLG7, Chalk7, OsChalk7
43793	27830537	Raboin L.M., Ballini E., Tharreau D., Ramanantsoanirina A., Frouin J., Courtois B., Ahmadi N.	Association mapping of resistance to rice blast in upland field conditions.	Rice (N Y)	9(1)	59	2016		
43794	27914544	Mu X.C., Zhang W., Wang L.X., Zhang S., Zhang K., Gao C.F., Wu S.F.	Resistance monitoring and cross-resistance patterns of three rice planthoppers, Nilaparvata lugens, Sogatella furcifera and Laodelphax striatellus to dinotefuran in China.	Pestic Biochem Physiol	134	8-13	2016		
43795	27876888	Ren J., Gao F., Wu X., Lu X., Zeng L., Lv J., Su X., Luo H., Ren G.	Bph32, a novel gene encoding an unknown SCR domain-containing protein, confers resistance against the brown planthopper in rice.	Sci Rep	6	37645	2016	BPH32	Bph32
43796	27838237	Uhrig J.F., Huang L.J., Barghahn S., Willmer M., Thurow C., Gatz C.	CC-type glutaredoxins recruit the transcriptional co-repressor TOPLESS to TGA-dependent target promoters in Arabidopsis thaliana.	Biochim. Biophys. Acta	1860(2)	218-226	2016		
43797	27902426	Jacob S., Gr?tsch T., Foster A.J., Sch?ffler A., Rieger P.H., Sandjo L.P., Liermann J.C., Opatz T., Thines E.	Unravelling the biosynthesis of pyriculol in the rice blast fungus Magnaporthe oryzae.	Microbiology (Reading, Engl.)			2016		
43798	27881876	Nistelberger H.M., Smith O., Wales N., Star B., Boessenkool S.	The efficacy of high-throughput sequencing and target enrichment on charred archaeobotanical remains.	Sci Rep	6	37347	2016		
43799	27845739	Lin S., Chen L., Tao H., Huang J., Xu C., Li L., Ma S., Tian T., Liu W., Xue L., Ai Y., He H.	Impact of SNPs on Protein Phosphorylation Status in Rice (Oryza sativa L.).	Int J Mol Sci	17(11)		2016		
43800	27876748	You L.L., Wu Y., Xu B., Ding J., Ge L.Q., Yang G.Q., Song Q.S., Stanley D., Wu J.C.	Driving Pest Insect Populations: Agricultural Chemicals Lead to an Adaptive Syndrome in Nilaparvata Lugens St?l (Hemiptera: Delphacidae).	Sci Rep	6	37430	2016		
43801	27889933	Selvaraj M.G., Valencia M.O., Ogawa S., Lu Y., Wu L., Downs C., Skinner W., Lu Z., Kridl J.C., Ishitani M., van Boxtel J.	Development and field performance of nitrogen use efficient rice lines for Africa.	Plant Biotechnol. J.			2016		
43802	27874087	Zhou H., He M., Li J., Chen L., Huang Z., Zheng S., Zhu L., Ni E., Jiang D., Zhao B., Zhuang C.	Development of Commercial Thermo-sensitive Genic Male Sterile Rice Accelerates Hybrid Rice Breeding Using the CRISPR/Cas9-mediated TMS5 Editing System.	Sci Rep	6	37395	2016		
43803	27862861	Jiang S., Wu H., Liu H., Zheng J., Lin Y., Chen H.	The overexpression of insect endogenous small RNAs in transgenic rice inhibits growth and delays pupation of striped stem borer (Chilo suppressalis).	Pest Manag. Sci.			2016		
43804	28007175	Pan L., Sun J., Wu X., Wei Z., Zhu L.	Transformation of hydroxylated and methoxylated 2,2',4,4',5-brominated diphenyl ether (BDE-99) in plants.	J Environ Sci (China)	49	197-202	2016		
43805	27671120	Helliwell E.E., Wang Q., Yang Y.	Ethylene Biosynthesis and Signaling Is Required for Rice Immune Response and Basal Resistance Against Magnaporthe oryzae Infection.	Mol. Plant Microbe Interact.	29(11)	831-843	2016		
43806	27912109	Deng L., Qin P., Liu Z., Wang G., Chen W., Tong J., Xiao L., Tu B., Sun Y., Yan W., He H., Tan J., Chen X., Wang Y., Li S., Ma B.	Characterization and fine-mapping of a novel premature leaf senescence mutant yellow leaf and dwarf 1 in rice.	Plant Physiol. Biochem.	111	50-58	2016		
43807	28049856	Chen X., Zhang H., Sun H., Luo H., Zhao L., Dong Z., Yan S., Zhao C., Liu R., Xu C., Li S., Chen H., Jin W.	IRREGULAR pollen EXINE1 Is a Novel Factor in Anther Cuticle and pollen Exine Formation.	Plant Physiol.	173(1)	307-325	2017		
43808	27815665	Ogah E.O., Smart L.E., Woodcock C.M., Caulfield J.C., Birkett M.A., Pickett J.A., Nwilene F.E., Bruce T.J.	Electrophysiological and behavioral responses of female African rice gall midge, Orseolia oryzivora Harris and Gagn?, to host plant volatiles.	J. Chem. Ecol.			2016		
43809	27800704	Cao J., Yang C., Li L., Jiang L., Wu Y., Wu C., Bu Q., Xia G., Liu X., Luo Y., Liu J.	Rice Plasma Membrane Proteomics Reveals Magnaporthe oryzae Promotes Susceptibility by Sequential Activation of Host Hormone Signaling Pathways.	Mol. Plant Microbe Interact.	29(11)	902-913	2016		
43810	27899926	Li X., Feng B., Zhang F., Tang Y., Zhang L., Ma L., Zhao C., Gao S.	Bioinformatic Analyses of Subgroup-A Members of the Wheat bZIP Transcription Factor Family and Functional Identification of TabZIP174 Involved in Drought Stress Response.	Front Plant Sci	7	1643	2016		
43811	27761892	Glaubitz U., Li X., Schaedel S., Erban A., Sulpice R., Kopka J., Hincha D.K., Zuther E.	Integrated analysis of rice transcriptomic and metabolomic responses to elevated night temperatures identifies sensitivity- and tolerance-related profiles.	Plant Cell Environ.	40(1)	121-137	2017		
43812	27805032	Wang L., Tang N., Gao X., Guo D., Chang Z., Fu Y., Akinyemi I.A., Wu Q.	Understanding the immune system architecture and transcriptome responses to southern rice black-streaked dwarf virus in Sogatella furcifera.	Sci Rep	6	36254	2016		
43813	27848980	Tabassum M.A., Zhu G., Hafeez A., Wahid M.A., Shaban M., Li Y.	Influence of leaf vein density and thickness on hydraulic conductance and photosynthesis in rice (Oryza sativa L.) during water stress.	Sci Rep	6	36894	2016		
43814	27895202	Ma W., Wu F., Sheng P., Wang X., Zhang Z., Zhou K., Zhang H., Hu J., Lin Q., Cheng Z., Wang J., Zhu S., Zhang X., Guo X., Wang H., Wu C., Zhai H., Wan J.	The lbd12-1 Transcription Factor Suppresses Apical Meristem Size by Repressing Argonaute 10 Expression.	Plant Physiol.	173(1)	801-811	2017	_,_,AGO1A	LBD11-1 ,LBD12-1 ,OsAGO1a, AGO1a, AGO10, AGO1-1 
43815	27819745	Yuan H.J., Wang Y.L., Wei Z.X., Xu Q.J., Zeng X.Q., Tang Y.W., Nyima T.S.	NJ cluster analysis of the SnRK2, PYR/PYL/RCAR, and ABF genes in Tibetan hulless barley.	Genet. Mol. Res.	15(4)		2016		
43816	27901104	Xiao C., Hu J., Ao Y.T., Cheng M.X., Gao G.J., Zhang Q.L., He G.C., He Y.Q.	Development and evaluation of near-isogenic lines for brown planthopper resistance in rice cv. 9311.	Sci Rep	6	38159	2016		
43817	27810475	Song Z., Zhao Y., Qian G., Odhiambo B.O., Liu F.	Novel insights into the regulatory roles of gene hshB in Xanthomonas oryzae pv. oryzicola.	Res. Microbiol.			2016		
43818	27664745	Tamreihao K., Ningthoujam D.S., Nimaichand S., Singh E.S., Reena P., Singh S.H., Nongthomba U.	Biocontrol and plant growth promoting activities of a Streptomyces corchorusii strain UCR3-16 and preparation of powder formulation for application as biofertilizer agents for rice plant.	Microbiol. Res.	192	260-70	2016		
43819	27899667	Mansueto L., Fuentes R.R., Borja F.N., Detras J., Abriol-Santos JM., Chebotarov D., Sanciangco M., Palis K., Copetti D., Poliakov A., Dubchak I., Solovyev V., Wing R.A., Hamilton R.S., Mauleon R., McNally K.L., Alexandrov N.	Rice SNP-seek database update: new SNPs, indels, and queries.	Nucleic Acids Res.	45(D1)	D1075-D1081	2017		
43820	27896932	Holyoke C.W., Cordova D., Zhang W., Barry J.D., Leighty R.M., Dietrich R.F., Rauh J.J., Pahutski T.F., Lahm G.P., Tong M.T., Benner E.A., Andreassi J.L., Smith R.M., Vincent D.R., Christianson L.A., Teixeira L.A., Singh V., Hughes K.A.	Mesoionic insecticides: A novel class of insecticides that modulate nicotinic acetylcholine receptors.	Pest Manag. Sci.			2016		
43821	27838799	Lou S., Chen S., Zhao X., Chen L., Zhang J., Fu H., Liu Y.G., Chen Y.	The far-upstream regulatory region of RFL is required for its precise spatial-temporal expression for floral development in rice.	Plant Mol. Biol.			2016		
43822	27866313	Chen Y.S., Chao Y.C., Tseng T.W., Huang C.K., Lo P.C., Lu C.A.	Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.	Plant Mol. Biol.			2016		
43823	27879387	Rushton P.S., Olek A.T., Makowski L., Badger J., Steussy C.N., Carpita N.C., Stauffacher C.V.	Rice Cellulose SynthaseA8 Plant-Conserved Region Is a Coiled-Coil at the Catalytic Core Entrance.	Plant Physiol.	173(1)	482-494	2017		
43824	27717449	Wei J., Choi H., Jin P., Wu Y., Yoon J., Lee Y.S., Quan T., An G.	GL2-type homeobox gene Roc4 in rice promotes flowering time preferentially under long days by repressing Ghd7.	Plant Sci.	252	133-143	2016		
43825	27923179	Dehury B., Behera S.K., Mahapatra N.	Structural dynamics of Casein Kinase I (CKI) from malarial parasite Plasmodium falciparum (Isolate 3D7): Insights from theoretical modelling and molecular simulations.	J. Mol. Graph. Model.	71	154-166	2017		
43826	27833163	Gao X., Shi D., Lv A., Wang S., Yuan S., Zhou P., An Y.	Increase phosphorus availability from the use of alfalfa (Medicago sativa L) green manure in rice (Oryza sativa L.) agroecosystem.	Sci Rep	6	36981	2016		
43827	27804786	Morita R., Nakagawa M., Takehisa H., Hayashi Y., Ichida H., Usuda S., Ichinose K., Abe H., Shirakawa Y., Sato T., Fujiwara M.T., Itoh R.D., Abe T.	Heavy-ion beam mutagenesis identified an essential gene for chloroplast development under cold stress conditions during both early growth and tillering stages in rice.	Biosci. Biotechnol. Biochem.	81(2)	271-282	2017	RPOB,PSAA,TCD5,RPOA,PSBA,RBCL	rpoB, RpoB, Rpobeta,PsaA, psaA, PsAA1, psaA1,OsTCD5, TSV, OsTSV, CSV1, OsCSV1,rope, rpoalpha, Rpoalpha, rope, RpoA ,PsbA, psbA, OsPsbA, PSBD1, OsPSBD1, psbD1,rbcL, rbcA, OsrbcL
43828	27881726	Butardo V.M., Anacleto R., Parween S., Samson I., de Guzman K., Alhambra C.M., Misra G., Sreenivasulu N.	Systems Genetics Identifies a Novel Regulatory Domain of Amylose Synthesis.	Plant Physiol.	173(1)	887-906	2017		
43829	27823898	Wang X.Y., Du L.X., Liu C.X., Gong L., Han L.Z., Peng Y.F.	RNAi in the striped stem borer, Chilo suppressalis, establishes a functional role for aminopeptidase N in Cry1Ab intoxication.	J. Invertebr. Pathol.	143	1-10	2016		
43830	27717459	Sestili F., Sparla F., Botticella E., Janni M., D'Ovidio R., Falini G., Marri L., Cuesta-Seijo JA., Moscatello S., Battistelli A., Trost P., Lafiandra D.	The down-regulation of the genes encoding Isoamylase 1 alters the starch composition of the durum wheat grain.	Plant Sci.	252	230-238	2016		
43831	27867151	Haibing S., Bin W., Renjie C., Xiaoya Z., Shibo Y., Tao L.	Genetic analysis and gene mapping of the glabrous leaf and hull mutant GLR3 in rice (Oryza sativa L.).	Yi Chuan	38(11)	1012-1019	2016		
43832	27898176	Kou Y., Tan Y.H., Ramanujam R., Naqvi N.I.	Structure-function analyses of the Pth11 receptor reveal an important role for CFEM motif and redox regulation in rice blast.	New Phytol.			2016		
43833	27825968	Zhang L., Dong C., Zhang Q., Zhao G., Li F., Xia C., Zhang L., Han L., Wu J., Jia J., Liu X., Kong X.	The wheat MYB transcription factor TaMYB18 regulates leaf rolling in rice.	Biochem. Biophys. Res. Commun.	481(1-2)	77-83	2016		
43834	27848097	Nutan K.K., Kushwaha H.R., Singla-Pareek SL., Pareek A.	Transcription dynamics of Saltol QTL localized genes encoding transcription factors, reveals their differential regulation in contrasting genotypes of rice.	Funct. Integr. Genomics	17(1)	69-83	2017		
43835	27900724	Lu W., Deng M., Guo F., Wang M., Zeng Z., Han N., Yang Y., Zhu M., Bian H.	Suppression of OsVPE3 Enhances salt tolerance by Attenuating Vacuole Rupture during Programmed Cell Death and Affects Stomata Development in Rice.	Rice (N Y)	9(1)	65	2016		
43836	27891171	Cai W.J., Ye T.T., Wang Q., Cai B.D., Feng Y.Q.	A rapid approach to investigate spatiotemporal distribution of phytohormones in rice.	Plant Methods	12	47	2016		
43837	27817054	Suzuki Y., Kondo E., Makino A.	Effects of co-overexpression of the genes of Rubisco and Transketolase on photosynthesis in rice.	Photosyn. Res.			2016		
43838	27797723	Zhang Z.H., Cao L.Y., Chen J.Y., Zhang Y.X., Zhuang J.Y., Cheng S.H.	Effects of Hd2 in the presence of the photoperiod-insensitive functional allele of Hd1 in rice.	Biol Open	5(11)	1719-1726	2016		
43839	27811002	Li Q., Yang A., Zhang W.H.	Efficient acquisition of iron confers greater tolerance to saline-alkaline stress in rice (Oryza sativa L.).	J. Exp. Bot.	67(22)	6431-6444	2016		
43840	27833097	Tao Y., Zhu J., Xu J., Wang L., Gu H., Zhou R., Yang Z., Zhou Y., Liang G.	Exploitation of heterosis loci for yield and yield components in rice using chromosome segment substitution lines.	Sci Rep	6	36802	2016		
43841	27838598	Moulick D., Ghosh D., Chandra Santra S.	Evaluation of effectiveness of seed priming with selenium in rice during germination under arsenic stress.	Plant Physiol. Biochem.	109	571-578	2016		
43842	27872632	Mathew I.E., Das S., Mahto A., Agarwal P.	Three Rice NAC Transcription Factors Heteromerize and Are Associated with seed size.	Front Plant Sci	7	1638	2016		
43843	27895653	Xu J.N., Xing S.S., Zhang Z.R., Chen X.S., Wang X.Y.	Genome-Wide Identification and Expression Analysis of the Tubby-Like Protein Family in the Malus domestica Genome.	Front Plant Sci	7	1693	2016		
43844	27834403	Ji H., Kim S.R., Kim Y.H., Suh J.P., Park H.M., Sreenivasulu N., Misra G., Kim S.M., Hechanova S.L., Kim H., Lee G.S., Yoon U.H., Kim T.H., Lim H., Suh S.C., Yang J., An G., Jena K.K.	Erratum: Map-based Cloning and Characterization of the BPH18 Gene from Wild Rice Conferring Resistance to Brown Planthopper (BPH) Insect Pest.	Sci Rep	6	36688	2016		
43845	27840573	Seol Y.J., Won S.Y., Shin Y., Lee J.Y., Chun J.S., Kim Y.K., Kim C.K.	A Multilayered Screening Method for the Identification of Regulatory Genes in Rice by Agronomic Traits.	Evol. Bioinform. Online	12	253-262	2016		
43846	27861933	Win K.T., Yamagata Y., Doi K., Uyama K., Nagai Y., Toda Y., Kani T., Ashikari M., Yasui H., Yoshimura A.	A single base change explains the independent origin of and selection for the nonshattering gene in African rice domestication.	New Phytol.			2016		
43847	27833841	Gopalakrishnan S., Vadlamudi S., Samineni S., Sameer Kumar CV.	Plant growth-promotion and biofortification of chickpea and pigeonpea through inoculation of biocontrol potential bacteria, isolated from organic soils.	Springerplus	5(1)	1882	2016		
43848	27737708	Hosen S.M., Das D., Kobi R., Chowdhury D.U., Alam M.J., Rudra B., Bakar M.A., Islam S., Rahman Z., Al-Forkan M.	Study of arsenic accumulation in rice and evaluation of protective effects of Chorchorus olitorius leaves against arsenic contaminated rice induced toxicities in Wistar albino rats.	BMC Pharmacol Toxicol	17(1)	46	2016		
43849	27595571	Rhee J., Horie T., Sasano S., Nakahara Y., Katsuhara M.	Identification of an H2 O2 permeable PIP aquaporin in barley and a serine residue promoting H2 O2 transport.	Physiol Plant	159(1)	120-128	2017		
43850	27697785	Mickelson-Young L., Wear E., Mulvaney P., Lee T.J., Szymanski E.S., Allen G., Hanley-Bowdoin L., Thompson W.	A flow cytometric method for estimating S-phase duration in plants.	J. Exp. Bot.	67(21)	6077-6087	2016		
43851	27765484	Xie J., Huo N., Zhou S., Wang Y., Guo G., Deal K.R., Ouyang S., Liang Y., Wang Z., Xiao L., Zhu T., Hu T., Tiwari V., Zhang J., Li H., Ni Z., Yao Y., Peng H., Zhang S., Anderson O.D., McGuire P.E., Dvorak J., Luo M.C., Liu Z., Gu Y.Q., Sun Q.	Sequencing and comparative analysis of Aegilops tauschii chromosome arm 3DS reveal rapid evolution of Triticeae genomes.	J Genet Genomics			2016		
43852	27702995	Mitra S., Mukherjee A., Wiley-Kalil A., Das S., Owen H., Reddy P.M., An? JM., James E.K., Gyaneshwar P.	A rhamnose-deficient lipopolysaccharide mutant of Rhizobium sp. IRBG74 is defective in root colonization and beneficial interactions with its flooding-tolerant hosts Sesbania cannabina and wetland rice.	J. Exp. Bot.	67(19)	5869-5884	2016		
43853	27739910	Ye C.Y., Zhang X., Chu Q., Liu C., Yu Y., Jiang W., Zhu Q.H., Fan L., Guo L.	Full-length sequence assembly reveals circular RNAs with diverse non-GT/AG splicing signals in rice.	RNA Biol		1-9	2016		
43854	27729470	?lvarez D., Vo? B., Maass D., W?st F., Schaub P., Beyer P., Welsch R.	Carotenogenesis Is Regulated by 5'UTR-Mediated Translation of Phytoene synthase Splice Variants.	Plant Physiol.	172(4)	2314-2326	2016		
43855	27747971	Minkenberg B., Xie K., Yang Y.	Discovery of rice essential genes by characterizing CRISPR-edited mutation of closely related rice MAP kinase genes.	Plant J.			2016		
43856	27701737	Sun H., Guo J., Duan Y., Zhang T., Huo H., Gong H.	Isolation and functional characterization of CsLsi1, a silicon transporter gene in Cucumis sativus.	Physiol Plant			2016		
43857	27711180	Nishimura T., Mochizuki S., Ishii-Minami N., Fujisawa Y., Kawahara Y., Yoshida Y., Okada K., Ando S., Matsumura H., Terauchi R., Minami E., Nishizawa Y.	Magnaporthe oryzae Glycine-Rich Secretion Protein, RBF1 Critically Participates in Pathogenicity through the Focal Formation of the Biotrophic Interfacial Complex.	PLoS Pathog.	12(10)	e1005921	2016		
43858	27744491	Emebiri L.C., Tan M.K., El-Bouhssini M., Wildman O., Jighly A., Tadesse W., Ogbonnaya F.C.	QTL mapping identifies a major locus for resistance in wheat to Sunn pest (Eurygaster integriceps) feeding at the vegetative growth stage.	Theor. Appl. Genet.			2016		
43859	27799937	Huang W., Yang Y.J., Hu H., Zhang S.B.	Responses of Photosystem I Compared with Photosystem II to Fluctuating Light in the Shade-Establishing Tropical Tree Species Psychotria henryi.	Front Plant Sci	7	1549	2016		
43860	27843443	Cho K., Lee H.J., Jo Y.M., Lim S.H., Rakwal R., Lee J.Y., Kim Y.M.	RNA Interference-Mediated Simultaneous Suppression of Seed Storage Proteins in Rice Grains.	Front Plant Sci	7	1624	2016		
43861	27713528	Wu C., Cui K., Wang W., Li Q., Fahad S., Hu Q., Huang J., Nie L., Peng S.	Heat-induced phytohormone changes are associated with disrupted early reproductive development and reduced yield in rice.	Sci Rep	6	34978	2016		
43862	27813561	Rahman M.H., Yu P., Zhang Y.X., Sun L.P., Wu W.X., Shen X.H., Zhan X.D., Chen D.B., Cao L.Y., Cheng S.H.	Quantitative trait loci mapping of the stigma exertion rate and spikelet number per panicle in rice (Oryza sativa L.).	Genet. Mol. Res.	15(4)		2016		
43863	27790231	Read A.C., Rinaldi F.C., Hutin M., He Y.Q., Triplett L.R., Bogdanove A.J.	Suppression of Xo1-Mediated Disease Resistance in Rice by a Truncated, Non-DNA-Binding TAL Effector of Xanthomonas oryzae.	Front Plant Sci	7	1516	2016		
43864	27785615	Swain D.M., Sahoo R.K., Srivastava V.K., Tripathy B.C., Tuteja R., Tuteja N.	Function of heterotrimeric G-protein gamma subunit RGG1 in providing salinity stress tolerance in rice by elevating detoxification of ROS.	Planta			2016	RGG1,BRD1,CYP20-3,_,STR7,BPH15,GAPC,ECA1,TDC7,RGB1	OsRGG1,brd1, OsDWARF, DWARF, OsBR6ox, BR6ox, CYP85A1, CYP85A4, OsDWF, CYP85A1/OsDWARF, OsBRD1, OsCYP85A1,OsCYP20-3, OsCYP-5,OsEE1, OsENO1, ENO1, OsEno7, Eno7, OsEno4, Eno4,OsStr7,RLCK134, OsRLCK134, OsLecRK1, LecRK1, SDRLK-LecRK1, OsSDRLK-LecRK1, OslecRK, lecRK, Bph15, OsBph15, Bph15 (Qbp2), Qbp2, qBPH-4,OsGapC3, OGapC3, OsGAPDH1, GAPDH1, OsGapC1,osECA1, OsECA1,OsTDC7,OsWD40-80, RGbeta1, OsRGB1,  OsDWD38, DWD38
43865	27760223	Li P., Li F., Han Y., Yang L., Liao X., Hou M.	Asymmetric Spread of SRBSDV between Rice and Corn Plants by the Vector Sogatella furcifera (Hemiptera: Delphacidae).	PLoS ONE	11(10)	e0165014	2016		
43866	27747443	Ambastha V., Sopory S.K., Tiwari B.S., Tripathy B.C.	Photo-modulation of programmed cell death in rice leaves triggered by salinity.	Apoptosis			2016		
43867	27761320	Wei T., Chen T.C., Ho Y.T., Ronald P.C.	Mutation of the rice XA21 predicted nuclear localization sequence does not affect resistance to Xanthomonas oryzae pv. oryzae.	PeerJ	4	e2507	2016		
43868	27840631	Gayen D., Ghosh S., Paul S., Sarkar S.N., Datta S.K., Datta K.	Metabolic Regulation of Carotenoid-Enriched Golden Rice Line.	Front Plant Sci	7	1622	2016		
43869	27734628	Paul J.Y., Khanna H., Kleidon J., Hoang P., Geijskes J., Daniells J., Zaplin E., Rosenberg Y., James A., Mlalazi B., Deo P., Arinaitwe G., Namanya P., Becker D., Tindamanyire J., Tushemereirwe W., Harding R., Dale J.	Golden bananas in the field: elevated fruit pro-Vitamin A from the expression of a single banana transgene.	Plant Biotechnol. J.			2016		
43870	27725674	Tang H., Zheng X., Li C., Xie X., Chen Y., Chen L., Zhao X., Zheng H., Zhou J., Ye S., Guo J., Liu Y.G.	Multi-step formation, evolution, and functionalization of new cytoplasmic male sterility genes in the plant mitochondrial genomes.	Cell Res.	27(1)	130-146	2017		
43871	27733415	Fu H., Yang D., Su W., Ma L., Shen Y., Ji G., Ye X., Wu X., Li Q.Q.	Genome-wide dynamics of alternative polyadenylation in rice.	Genome Res.	26(12)	1753-1760	2016		
43872	27775871	Zhou W., Wang X., Zhou D., Ouyang Y., Yao J.	Overexpression of the 16-kDa alpha-amylase/trypsin inhibitor RAG2 improves grain yield and quality of rice.	Plant Biotechnol. J.			2016	GLUB1,AGPS2,_,WX1,_,FATA,GLUD1,GLUA2	GluB1, GluB1-A, GluB-1a, GluB-1, OsGluB1, GluB-1b, OsGluB-1b, GLUB1B,OsAGPS2a, AGPS2A, AGPS2B, OsAGPS2, osagps2, APS2, APS2a, APS2b, AGPS2a, APGS2b, OsAGPS2b, AGPP, GAS8, OsAPS2, OsAPS2a, OsAPS2b,RAG2, RA14B, RA14, OsEnS-98,wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx,,OsFatA, FatA,GluD1, GluD-1, OsGluD-1, OsEnS-33, EnS-33, GluD,Glua2*, Glua2, GLUA-2, GluA-2, Glu20, GluA2, OsEnS-137
43873	27965027	Yang R., Li Y., Su Y., Shen Y., Tang D., Luo Q., Cheng Z.	A functional centromere lacking CentO sequences in a newly formed ring chromosome in rice.	J Genet Genomics	43(12)	694-701	2016		
43874	27793713	Brambilla V., Fornara F.	Y flowering? Regulation and activity of CONSTANS and CCT-domain proteins in Arabidopsis and crop species.	Biochim. Biophys. Acta			2016		
43875	27755575	Zhong S., Ma L., Fatima S.A., Yang J., Chen W., Liu T., Hu Y., Li Q., Guo J., Zhang M., Lei L., Li X., Tang S., Luo P.	Collinearity Analysis and High-Density Genetic Mapping of the Wheat Powdery Mildew Resistance Gene Pm40 in PI 672538.	PLoS ONE	11(10)	e0164815	2016		
43876	27752792	Yu J.H., Li Y.Y., Xiang M., Zhu J.Q., Huang X.H., Wang W.J., Tan R., Zhou J.Y., Liao H.	Molecular cloning and characterization of alpha-amylase/subtilisin inhibitor from rhizome of Ligusticum chuanxiong.	Biotechnol. Lett.	39(1)	141-148	2017		
43877	27774087	Rodrigues E.P., Soares C.P., Galv?o PG., Imada E.L., Sim?es-Ara?jo JL., Rouws L.F., de Oliveira AL., Vidal M.S., Baldani J.I.	Identification of Genes Involved in Indole-3-Acetic Acid Biosynthesis by Gluconacetobacter diazotrophicus PAL5 Strain Using Transposon Mutagenesis.	Front Microbiol	7	1572	2016		
43878	27796586	Nguyen T.D., Moon S., Oo M.M., Tayade R., Soh M.S., Song J.T., Oh S.A., Jung K.H., Park S.K.	Application of rice microspore-preferred promoters to manipulate early pollen development in Arabidopsis: a heterologous system.	Plant Reproduction	29(4)	291-300	2016	RMP8,_,_,_,GELP59,_,_,_,BGAL5	OsRMP8,RMP2,RMP4,RMP6,OsGELP59, RMP7,RMP9,RMP3,RMP5,OsBgal5, OsBGal5, RMP1 
43879	27706188	Zhao K., Ren F., Han F., Liu Q., Wu G., Xu Y., Zhang J., Wu X., Wang J., Li P., Shi W., Zhu H., Lv J., Zhao X., Tang X.	Edible Safety Assessment of Genetically Modified Rice T1C-1 for Sprague Dawley Rats through Horizontal Gene Transfer, Allergenicity and Intestinal Microbiota.	PLoS ONE	11(10)	e0163352	2016		
43880	27704482	Wang H., Ye S., Mou T.	Molecular Breeding of Rice Restorer Lines and Hybrids for Brown Planthopper (BPH) Resistance Using the Bph14 and Bph15 Genes.	Rice (N Y)	9(1)	53	2016		
43881	27780273	Zhang W., Cao Z., Zhou Q., Chen J., Xu G., Gu J., Liu L., Wang Z., Yang J., Zhang H.	Grain Filling Characteristics and Their Relations with Endogenous Hormones in Large- and Small-Grain Mutants of Rice.	PLoS ONE	11(10)	e0165321	2016		
43882	27745656	Singh N., Srivastava S., Rathaur S., Singh N.	Assessing the bioremediation potential of arsenic tolerant bacterial strains in rice rhizosphere interface.	J Environ Sci (China)	48	112-119	2016		
43883	27764161	Liu X., Wei X., Sheng Z., Jiao G., Tang S., Luo J., Hu P.	Polycomb Protein OsFIE2 Affects plant height and grain yield in Rice.	PLoS ONE	11(10)	e0164748	2016		
43884	27287092	Ngo V.D., Luu T.D., Van Vo T., Tran V.T., Duan W., Tran P.H., Tran T.T.	An investigation of effects of modification processes on physical properties and mechanism of drug release for sustaining drug release from modified rice.	Mater Sci Eng C Mater Biol Appl	67	1-7	2016		
43885	27812419	Huang Z., Jin S.H., Guo H.D., Zhong X.J., He J., Li X., Jiang M.Y., Yu X.F., Long H., Ma M.D., Chen Q.B.	Genome-wide identification and characterization of TIFY family genes in Moso Bamboo (Phyllostachys edulis) and expression profiling analysis under dehydration and cold stresses.	PeerJ	4	e2620	2016		
43886	27872859	Hu B.L., Xie J.K., Wan Y., Zhang J.W., Zhang F.T., Li X.	Mapping QTLs for Fertility Restoration of Different Cytoplasmic male sterility Types in Rice Using Two Oryza sativa ~O. rufipogon Backcross Inbred Line Populations.	Biomed Res Int	2016	9236573	2016		
43887	27738714	Gahlaut V., Jaiswal V., Kumar A., Gupta P.K.	Transcription factors involved in drought tolerance and their possible role in developing drought tolerant cultivars with emphasis on wheat (Triticum aestivum L.).	Theor. Appl. Genet.	129(11)	2019-2042	2016		
43888	27826313	Yuan S., Li R., Wang L., Chen H., Zhang C., Chen L., Hao Q., Shan Z., Zhang X., Chen S., Yang Z., Qiu D., Zhou X.	Search for Nodulation and Nodule Development-Related Cystatin Genes in the Genome of Soybean (Glycine max).	Front Plant Sci	7	1595	2016		
43889	27716126	Prakash C., Mithra S.V., Singh P.K., Mohapatra T., Singh N.K.	Unraveling the molecular basis of oxidative stress management in a drought tolerant rice genotype Nagina 22.	BMC Genomics	17(1)	774	2016		
43890	27729476	Paul S., Gayen D., Datta S.K., Datta K.	Analysis of high iron rice lines reveals new miRNAs that target iron transporters in roots.	J. Exp. Bot.	67(19)	5811-5824	2016		
43891	27764111	Wu Y., Wang Y., Mi X.F., Shan J.X., Li X.M., Xu J.L., Lin H.X.	The QTL GNP1 Encodes GA20ox1, Which Increases grain number and Yield by Increasing Cytokinin Activity in Rice Panicle Meristems.	PLoS Genet.	12(10)	e1006386	2016	GNP1	GA20OX1, OsGA20ox1, 20ox1, GA20ox-1, ga20ox1, Os20ox, C20OX2, OsGA20ox2, OsGA20ox-1, GA20ox1, OsGNP1
43892	27723774	Li T., Ali J., Marcaida M., Angeles O., Franje N.J., Revilleza J.E., Manalo E., Redo?a E., Xu J., Li Z.	Combining Limited Multiple Environment Trials Data with Crop Modeling to Identify Widely Adaptable Rice Varieties.	PLoS ONE	11(10)	e0164456	2016		
43893	27725719	Kalaivani K., Kalaiselvi M.M., Senthil-Nathan S.	Effect of methyl salicylate (MeSA), an elicitor on growth, physiology and pathology of resistant and susceptible rice varieties.	Sci Rep	6	34498	2016		
43894	27816829	Herath V.	Small family, big impact: In silico analysis of DREB2 transcription factor family in rice.	Comput Biol Chem	65	128-139	2016		
43895	27578842	Yang C., Ma Y., Li J.	The rice YABBY4 gene regulates plant growth and development through modulating the gibberellin pathway.	J. Exp. Bot.	67(18)	5545-5556	2016		
43896	27634462	Bonato P., Alves L.R., Osaki J.H., Rigo L.U., Pedrosa F.O., Souza E.M., Zhang N., Schumacher J., Buck M., Wassem R., Chubatsu L.S.	The NtrY-NtrX two-component system is involved in controlling nitrate assimilation in Herbaspirillum seropedicae strain SmR1.	FEBS J.	283(21)	3919-3930	2016		
43897	27714836	Wang Y., Dai P., Chen X., Romeis J., Shi J., Peng Y., Li Y.	Ingestion of Bt rice pollen does not reduce the survival or hypopharyngeal gland development of Apis mellifera adults.	Environmental Toxicology and Chemistry			2016		
43898	27984138	Gani A., Ashwar B.A., Akhter G., Shah A., Wani I.A., Masoodi F.A.	Physico-chemical, structural, pasting and thermal properties of starches of fourteen Himalayan rice cultivars.	Int. J. Biol. Macromol.	95	1101-1107	2017		
43899	27771250	Toyomasu T., Miyamoto K., Shenton M.R., Sakai A., Sugawara C., Horie K., Kawaide H., Hasegawa M., Chuba M., Mitsuhashi W., Yamane H., Kurata N., Okada K.	Characterization and evolutionary analysis of ent-kaurene synthase like genes from the wild rice species Oryza rufipogon.	Biochem. Biophys. Res. Commun.	480(3)	402-408	2016		
43900	27924127	Ashraf H., Husaini A.M., Ashraf Bhat M., Parray G.A., Khan S., Ganai N.A.	SSR based genetic diversity of pigmented and aromatic rice (Oryza sativa L.) genotypes of the western Himalayan region of India.	Physiol Mol Biol Plants	22(4)	547-555	2016		
43901	27696287	De Leon TB., Linscombe S., Subudhi P.K.	Molecular Dissection of Seedling Salinity Tolerance in Rice (Oryza sativa L.) Using a High-Density GBS-Based SNP Linkage Map.	Rice (N Y)	9(1)	52	2016		
43902	27733118	Li W., Chen M., Wang E., Hu L., Hawkesford M.J., Zhong L., Chen Z., Xu Z., Li L., Zhou Y., Guo C., Ma Y.	Genome-wide analysis of autophagy-associated genes in foxtail millet (Setaria italica L.) and characterization of the function of SiATG8a in conferring tolerance to nitrogen starvation in rice.	BMC Genomics	17(1)	797	2016		
43903	27756006	Wang F., Liu J., Zhou L., Pan G., Li Z., Zaidi S.H., Cheng F.	Senescence-specific change in ROS scavenging enzyme activities and regulation of various SOD isozymes to ROS levels in psf mutant rice leaves.	Plant Physiol. Biochem.	109	248-261	2016		
43904	27813582	Lee K.J., Kwon S.J., Hwang J.E., Han S.M., Jung I., Kim J.B., Choi H.I., Ryu J., Kang S.Y.	Genome-wide expression analysis of a rice mutant line under salt stress.	Genet. Mol. Res.	15(4)		2016		
43905	27924028	Dierckxsens N., Mardulyn P., Smits G.	NOVOPlasty: de novo assembly of organelle genomes from whole genome data.	Nucleic Acids Res.			2016		
43906	27775031	Melonek J., Stone J.D., Small I.	Evolutionary plasticity of restorer-of-fertility-like proteins in rice.	Sci Rep	6	35152	2016		
43907	27757115	Zhang P., Zhong K., Tong H., Shahid M.Q., Li J.	Association Mapping for Aluminum Tolerance in a Core Collection of Rice Landraces.	Front Plant Sci	7	1415	2016		
43908	27720675	Okumura M., Fujitani Y., Maekawa M., Charoenpanich J., Murage H., Kimbara K., Sahin N., Tani A.	Cultivable Methylobacterium species diversity in rice seeds identified with whole-cell matrix-assisted laser desorption/ionization time-of-flight mass spectrometric analysis.	J. Biosci. Bioeng.			2016		
43909	27722771	Singh S.P., Keller B., Gruissem W., Bhullar N.K.	Rice NICOTIANAMINE SYNTHASE 2 expression improves dietary iron and zinc levels in wheat.	Theor. Appl. Genet.			2016		
43910	27704315	Ray S., Basu S., Rivera-Vega LJ., Acevedo F.E., Louis J., Felton G.W., Luthe D.S.	Lessons from the Far End: Caterpillar FRASS-Induced Defenses in Maize, Rice, Cabbage, and Tomato.	J. Chem. Ecol.	42(11)	1130-1141	2016		
43911	27744227	Lavinsky A.O., Detmann K.C., Reis J.V., ?vila RT., Sanglard M.L., Pereira L.F., Sanglard L.M., Rodrigues F.A., Ara?jo WL., DaMatta F.M.	Silicon improves rice grain yield and photosynthesis specifically when supplied during the reproductive growth stage.	J. Plant Physiol.	206	125-132	2016		
43912	27767093	Mieulet D., Jolivet S., Rivard M., Cromer L., Vernet A., Mayonove P., Pereira L., Droc G., Courtois B., Guiderdoni E., Mercier R.	Turning rice meiosis into mitosis.	Cell Res.	26(11)	1242-1254	2016		
43913	27807437	Balakrishnan D., Subrahmanyam D., Badri J., Raju A.K., Rao Y.V., Beerelli K., Mesapogu S., Surapaneni M., Ponnuswamy R., Padmavathi G., Babu V.R., Neelamraju S.	Genotype ~ Environment Interactions of Yield Traits in Backcross Introgression Lines Derived from Oryza sativa cv. Swarna/Oryza nivara.	Front Plant Sci	7	1530	2016		
43914	27694332	Kurniasih B., Greenway H., Colmer T.D.	Energetics of acclimation to NaCl by submerged, anoxic rice seedlings.	Ann. Bot.	119(1)	129-142	2017		
43915	27843741	Diyabalanage S., Navarathna T., Abeysundara H.T., Rajapakse S., Chandrajith R.	Trace elements in native and improved paddy rice from different climatic regions of Sri Lanka: implications for public health.	Springerplus	5(1)	1864	2016		
43916	27586643	Macovei A., Sahoo R.K., Fa? M., Balestrazzi A., Carbonera D., Tuteja N.	Overexpression of PDH45 or SUV3 helicases in rice leads to delayed leaf senescence-associated events.	Protoplasma			2016		
43917	27968990	Chang Z., Chen Z., Yan W., Xie G., Lu J., Wang N., Lu Q., Yao N., Yang G., Xia J., Tang X.	An ABC transporter, OsABCG26, is required for anther cuticle and pollen exine formation and pollen-pistil interactions in rice.	Plant Sci.	253	21-30	2016	OSC4,UDT1,WDA1,ABCG26,ABCG15,C6,CYP704B2	Osc4, OsC4, Osg4B, OsLTPc1, OsLtpIII.1, C4,Udt1, bHLH164, OsUDT1, OsbHLH164 ,OsWDA1, Wda1, wda1, OS-CER1, OsGL1-5,OsABCG26,OsABCG15, PDA, PDA1, OsABCG15/PDA1,Osc6, Osg6B, OsG6B, OsLTPG25, OsLTPg25, OsLtpVII.1, Os C6,OsCYP704B2
43918	27733859	Domingo C., Lalanne E., Catal? MM., Pla E., Reig-Valiente JL., Tal?n M.	Physiological Basis and Transcriptional Profiling of Three Salt-Tolerant Mutant Lines of Rice.	Front Plant Sci	7	1462	2016		
43919	27795689	Busungu C., Taura S., Sakagami J.I., Ichitani K.	Identification and linkage analysis of a new rice bacterial blight resistance gene from XM14, a mutant line from IR24.	Breed. Sci.	66(4)	636-645	2016	XA42	xa42
43920	27599761	Wicker T., Yu Y., Haberer G., Mayer K.F., Marri P.R., Rounsley S., Chen M., Zuccolo A., Panaud O., Wing R.A., Roffler S.	DNA transposon activity is associated with increased mutation rates in genes of rice and other grasses.	Nat Commun	7	12790	2016		
43921	27614468	Zhang X., Zheng X., Ke S., Zhu H., Liu F., Zhang Z., Peng X., Guo L., Zeng R., Hou P., Liu Z., Wu S., Song M., Yang J., Zhang G.	ER-localized adenine nucleotide transporter ER-ANT1: an integrator of energy and stress signaling in rice.	Plant Mol. Biol.	92(6)	701-715	2016	ERANT1,IRE1,BIP4,CHR715,BIP1,HSP90,_,CFBP2,O3,_,CIPK15,_,UGP1,_,SPS1,RPN1,_,CNX,PDIL2-3,_,BZIP39,CRO1	ER-ANT1,OsIRE1, OsIre1,OsBiP4, BiP4, OsMed37_5, Med37_5, BiP2,SnRK2, OsCHR715,  OsRING432, RING432,OsBiP1, BiP1, BiP, Bip3, OsBiP3, BIP1/OsBIP3, OsMed37_2, Med37_2 ,OsHsp90, rHSP90, OsHSP90, GRP94, OsGRP94,Stt3a, STT3,OscFBP2, cFBP2,OsbZIP60, bZIP60,SnRK1, OsSnRK1, OsSnRK3.9, SnRK3.9,OsCIPK15, OsSnRK3.31, SnRK3.31,SEC61,Ugp1, OsUgp1, UGP2, UGP3,PM-ANT,sps1, OsSPS1, SPS,OsRpn1,BiP3,OsCNX, OsCNX1, CNX1,PDIL2;3, OsPDIL2;3, PDIL 2-3, OsPDIL2-3, OsTrx27, Trx27,,OsbZIP39, bZIP39, DLN138, OsDLN138,OsCRO1, CRT, CRT-1, OsCRT-1, OsCRT1, CRT1
43922	27646344	Huang L., Hong Y., Zhang H., Li D., Song F.	Rice NAC transcription factor ONAC095 plays opposite roles in drought and cold stress tolerance.	BMC Plant Biol.	16(1)	203	2016		
43923	27703843	Thomas N.C., Schwessinger B., Liu F., Chen H., Wei T., Nguyen Y.P., Shaker I.W., Ronald P.C.	XA21-specific induction of stress-related genes following Xanthomonas infection of detached rice leaves.	PeerJ	4	e2446	2016		
43924	27621428	Wu D., Yamaji N., Yamane M., Kashino-Fujii M., Sato K., Feng Ma J.	The HvNramp5 Transporter Mediates Uptake of Cadmium and Manganese, But Not Iron.	Plant Physiol.	172(3)	1899-1910	2016		
43925	27622467	Zhang J., Chen L.L., Sun S., Kudrna D., Copetti D., Li W., Mu T., Jiao W.B., Xing F., Lee S., Talag J., Song J.M., Du B., Xie W., Luo M., Maldonado C.E., Goicoechea J.L., Xiong L., Wu C., Xing Y., Zhou D.X., Yu S., Zhao Y., Wang G., Yu Y., Luo Y., Hurtado B.E., Danowitz A., Wing R.A., Zhang Q.	Building two indica rice reference genomes with PacBio long-read and Illumina paired-end sequencing data.	Sci Data	3	160076	2016		
43926	27795687	Hossain M.K., Jena K.K., Bhuiyan M.A., Wickneswari R.	Association between QTLs and morphological traits toward sheath blight resistance in rice (Oryza sativa L.).	Breed. Sci.	66(4)	613-626	2016		
43927	27643852	Zhang K., Xu W., Wang C., Yi X., Zhang W., Su Z.	Differential deposition of H2A.Z in combination with histone modifications within related genes in rice callus and seedling.	Plant J.			2016		
43928	27618611	Li J., Meng X., Zong Y., Chen K., Zhang H., Liu J., Li J., Gao C.	Gene replacements and insertions in rice by intron targeting using CRISPR-Cas9.	Nat Plants	2	16139	2016		
43929	27670771	He W., Fang N., Wang R., Wu Y., Zeng G., Guan C., Chen H., Huang J., Wang J., Bao Y., Zhang H.	Fine mapping of a new race-specific blast resistance gene Pi-hk2 in Japonica Heikezijing from Taihu region of China.	Phytopathology			2016		
43930	27633505	Banakar R., Alvarez Fern?ndez ?., Abad?a J., Capell T., Christou P.	The expression of heterologous Fe (III) phytosiderophore transporter HvYS1 in rice increases Fe uptake, translocation and seed loading and excludes heavy metals by selective Fe transport.	Plant Biotechnol. J.			2016		
43931	27600536	Lowe K., Wu E., Wang N., Hoerster G., Hastings C., Cho M.J., Scelonge C., Lenderts B., Chamberlin M., Cushatt J., Wang L., Ryan L., Khan T., Chow-Yiu J., Hua W., Yu M., Banh J., Bao Z., Brink K., Igo E., Rudrappa B., Shamseer P.M., Bruce W., Newman L., Shen B., Zheng P., Bidney D., Falco S.C., RegisterIII JC., Zhao Z.Y., Xu D., Jones T.J., Gordon-Kamm WJ.	Morphogenic Regulators Baby boom and Wuschel Improve Monocot Transformation.	Plant Cell			2016		
43932	27606959	Jin L., Qin Q., Wang Y., Pu Y., Liu L., Wen X., Ji S., Wu J., Wei C., Ding B., Li Y.	Rice Dwarf Virus P2 Protein Hijacks Auxin Signaling by Directly Targeting the Rice OsIAA10 Protein, Enhancing Viral Infection and Disease Development.	PLoS Pathog.	12(9)	e1005847	2016	IAA10,TIR1	OsIAA10, OsIAA5, DLN71, OsDLN71,OsTIR1, OsFbox248, Fbox248, Os_F071, AFB,  OsFBL21, FBL21
43933	27658241	Shirke M.D., Mahesh H.B., Gowda M.	Genome-Wide Comparison of Magnaporthe Species Reveals a Host-Specific Pattern of Secretory Proteins and Transposable Elements.	PLoS ONE	11(9)	e0162458			
43934	26747650	Lung S.C., Chye M.L.	The binding versatility of plant acyl-CoA-binding proteins and their significance in lipid metabolism.	Biochim. Biophys. Acta	1861(9 Pt B)	1409-21	2016		
43935	27708655	Zhang Y.X., Xu H.H., Liu S.J., Li N., Wang W.Q., M?ller IM., Song S.Q.	Proteomic Analysis Reveals Different Involvement of Embryo and Endosperm Proteins during Aging of Yliangyou 2 Hybrid Rice Seeds.	Front Plant Sci	7	1394	2016		
43936	27695474	Feng K., Liu F., Zou J., Xing G., Deng P., Song W., Tong W., Nie X.	Genome-Wide Identification, Evolution, and Co-expression Network Analysis of Mitogen-activated protein kinase Kinase Kinases in Brachypodium distachyon.	Front Plant Sci	7	1400	2016		
43937	27693372	Zha W., Zhou L., Li S., Liu K., Yang G., Chen Z., Liu K., Xu H., Li P., Hussain S., You A.	Characterization and comparative profiling of the small RNA transcriptomes in the Hemipteran insect Nilaparvata lugens.	Gene	595(1)	83-91	2016		
43938	27677708	Jiang S.Y., Ma A., Xie L., Ramachandran S.	Improving protein content and quality by over-expressing artificially synthetic fusion proteins with high lysine and threonine constituent in rice plants.	Sci Rep	6	34427	2016	_,PRO13A.3	,Prol-24, pro13a.3, OsPRO13A.3
43939	27708650	Zhang M., Wei F., Guo K., Hu Z., Li Y., Xie G., Wang Y., Cai X., Peng L., Wang L.	A Novel FC116/BC10 Mutation Distinctively Causes Alteration in the Expression of the Genes for Cell Wall Polymer Synthesis in Rice.	Front Plant Sci	7	1366	2016	BC10	BC10, bc10, FC116, FC116/BC10, Osbc10, Osfc116
43940	27605490	Chen W.J., Kuo T.Y., Hsieh F.C., Chen P.Y., Wang C.S., Shih Y.L., Lai Y.M., Liu J.R., Yang Y.L., Shih M.C.	Involvement of type VI secretion system in secretion of iron chelator pyoverdine in Pseudomonas taiwanensis.	Sci Rep	6	32950	2016		
43941	27647523	Mei J., Ding Y., Li Y., Tong C., Du H., Yu Y., Wan H., Xiong Q., Yu J., Liu S., Li J., Qian W.	Transcriptomic comparison between Brassica oleracea and rice (Oryza sativa) reveals diverse modulations on cell death in response to Sclerotinia sclerotiorum.	Sci Rep	6	33706	2016		
43942	27795679	Tanaka J., Hayashi T., Iwata H.	A practical, rapid generation-advancement system for rice breeding using simplified biotron breeding system.	Breed. Sci.	66(4)	542-551	2016		
43943	27671164	Ereful N.C., Liu L.Y., Tsai E., Kao S.M., Dixit S., Mauleon R., Malabanan K., Thomson M., Laurena A., Lee D., Mackay I., Greenland A., Powell W., Leung H.	Analysis of Allelic Imbalance in Rice Hybrids Under Water Stress and Association of Asymmetrically Expressed Genes with Drought-Response QTLs.	Rice (N Y)	9(1)	50	2016		
43944	27746792	Jin Q., Hu X., Li X., Wang B., Wang Y., Jiang H., Mattson N., Xu Y.	Genome-Wide Identification and Evolution Analysis of Trehalose-6-phosphate synthase Gene Family in Nelumbo nucifera.	Front Plant Sci	7	1445	2016		
43945	27608922	Cheng H., Hao M., Wang W., Mei D., Tong C., Wang H., Liu J., Fu L., Hu Q.	Genomic identification, characterization and differential expression analysis of SBP-box gene family in Brassica napus.	BMC Plant Biol.	16(1)	196	2016		
43946	27682162	Ji H., Kim S.R., Kim Y.H., Suh J.P., Park H.M., Sreenivasulu N., Misra G., Kim S.M., Hechanova S.L., Kim H., Lee G.S., Yoon U.H., Kim T.H., Lim H., Suh S.C., Yang J., An G., Jena K.K.	Map-based Cloning and Characterization of the BPH18 Gene from Wild Rice Conferring Resistance to Brown Planthopper (BPH) Insect Pest.	Sci Rep	6	34376	2016		
43947	27683727	Wang P., Zhang W., Mao C., Xu G., Zhao F.J.	The role of OsPT8 in arsenate uptake and varietal difference in arsenate tolerance in rice.	J. Exp. Bot.	67(21)	6051-6059	2016		
43948	27620639	Fiyaz R.A., Yadav A.K., Krishnan S.G., Ellur R.K., Bashyal B.M., Grover N., Bhowmick P.K., Nagarajan M., Vinod K.K., Singh N.K., Prabhu K.V., Singh A.K.	Mapping quantitative trait loci responsible for resistance to Bakanae disease in rice.	Rice (N Y)	9(1)	45	2016		
43949	27706742	Shi L., Wei X.J., Adedze Y.M., Sheng Z.H., Tang S.Q., Hu P.S., Wang J.L.	Characterization and gene cloning of the rice (Oryza sativa L.) dwarf and narrow-leaf mutant DNL3.	Genet. Mol. Res.	15(3)		2016	ND1,RAN2,GW8,_,CSLD5,_,_,BC7,MCM3,CESA3,CESA7,CESA5,CESA11,CESA2,CSLF6	CSLD4, OsCSLD4, OsCD1, CD1, DNL3, OsDNL3, NRL1, OsNRL1, SPO1, OsSPO1, SPO1/OsCSLD4,OsRAN2,SPL16, OsSPL16, SLP1, OsSLP1, qGW8, OsGW8,CDC2,OsCSLD5,CDC3,OsRPA32, RPA32, RPA2A ,OsCesA4, OsCESA4, CESA4, OS_CESA04, BC11, bc7t, Bc7(t), bc-7, OsCesA 4, CesA4, FC17/CESA4, FC17, OsFC17,OsMCM3,OsCesA3, OsCESA3, OS_CESA03,OsCesA7, OsCESA7, OS_CESA07, OsCesA 7, CesA7,OsCesA5, OsCESA5, OS_CESA05,OsCesA11, OsCESA11, OsCLD1, CLD1,OsCesA2, OsCESA2, OS_CESA02,OsCslF6, OsCSLF6, OsCLD3, CLD3
43950	27721133	Radhakrishnan R., Lee I.J.	Gibberellins producing Bacillus methylotrophicus KE2 supports plant growth and enhances nutritional metabolites and food values of lettuce.	Plant Physiol. Biochem.	109	181-189	2016		
43951	27670819	Kameoka H., Dun E.A., Lopez-Obando M., Brewer P.B., de Saint Germain A., Rameau C., Beveridge C.A., Kyozuka J.	Phloem Transport of the Receptor DWARF14 Protein Is Required for Full Function of Strigolactones.	Plant Physiol.	172(3)	1844-1852	2016		
43952	27681580	Mohanty B., Takahashi H., de Los Reyes BG., Wijaya E., Nakazono M., Lee D.Y.	Transcriptional regulatory mechanism of alcohol dehydrogenase 1-deficient mutant of rice for cell survival under complete submergence.	Rice (N Y)	9(1)	51	2016		
43953	27616208	Wang Y., Duan X., Xu S., Wang R., Ouyang Z., Shen W.	Linking hydrogen-mediated boron toxicity tolerance with improvement of root elongation, water status and reactive oxygen species balance: a case study for rice.	Ann. Bot.	118(7)	1279-1291	2016		
43954	27681945	Alves C.S., Vicentini R., Duarte G.T., Pinoti V.F., Vincentz M., Nogueira F.T.	Genome-wide identification and characterization of tRNA-derived RNA fragments in land plants.	Plant Mol. Biol.			2016		
43955	27659322	Cao H., Liu C.Y., Liu C.X., Zhao Y.L., Xu R.R.	Genomewide analysis of the lateral organ boundaries domain gene family in Vitis vinifera.	J. Genet.	95(3)	515-26	2016		
43956	27653809	Xiong D., Flexas J., Yu T., Peng S., Huang J.	Leaf anatomy mediates coordination of leaf hydraulic conductance and mesophyll conductance to CO2 in Oryza.	New Phytol.	213(2)	572-583	2017		
43957	27703460	Rebolledo M.C., Pe?a AL., Duitama J., Cruz D.F., Dingkuhn M., Grenier C., Tohme J.	Combining Image Analysis, Genome Wide Association Studies and Different Field Trials to Reveal Stable Genetic Regions Related to Panicle Architecture and the Number of Spikelets per Panicle in Rice.	Front Plant Sci	7	1384	2016		
43958	27652777	Park A.K., Kim I.S., Do H., Jeon B.W., Lee C.W., Roh S.J., Shin S.C., Park H., Kim Y.S., Kim Y.H., Yoon H.S., Lee J.H., Kim H.W.	Structure and catalytic mechanism of monodehydroascorbate reductase, MDHAR, from Oryza sativa L. japonica.	Sci Rep	6	33903	2016		
43959	27578792	Hibara K., Isono M., Mimura M., Sentoku N., Kojima M., Sakakibara H., Kitomi Y., Yoshikawa T., Itoh J., Nagato Y.	Jasmonate regulates juvenile-to-adult phase transition in rice.	Development	143(18)	3407-16	2016		
43960	27795683	Muto C., Ishikawa R., Olsen K.M., Kawano K., Bounphanousay C., Matoh T., Sato Y.I.	Genetic diversity of the Wx flanking region in rice landraces in northern Laos.	Breed. Sci.	66(4)	580-590	2016		
43961	27659335	Magwa R.A., Zhao H., Yao W., Xie W., Yang L., Xing Y., Bai X.	Genomewide association analysis for awn length linked to the seed shattering gene qSH1 in rice.	J. Genet.	95(3)	639-46	2016		
43962	27590335	Julia C., Wissuwa M., Kretzschmar T., Jeong K., Rose T.	Phosphorus uptake, partitioning and redistribution during grain filling in rice.	Ann. Bot.	118(6)	1151-1162	2016		
43963	27649148	Park S., Choi M.J., Lee J.Y., Kim J.K., Ha S.H., Lim S.H.	Molecular and Biochemical Analysis of Two Rice Flavonoid 3'-Hydroxylase to Evaluate Their Roles in Flavonoid Biosynthesis in Rice Grain.	Int J Mol Sci	17(9)		2016		
43964	27683092	Kudo M., Kidokoro S., Yoshida T., Mizoi J., Todaka D., Fernie A.R., Shinozaki K., Yamaguchi-Shinozaki K.	Double overexpression of DREB and PIF transcription factors improves drought stress tolerance and cell elongation in transgenic plants.	Plant Biotechnol. J.			2016		
43965	27795684	Liu X., Zhang C., Li X., Tu J.	Pyramiding and evaluation of both a foreign Bacillus thuringiensis and a lysine-rich protein gene in the elite indica rice 9311.	Breed. Sci.	66(4)	591-598	2016		
43966	27619227	Wang S., Chen W., Yang C., Yao J., Xiao W., Xin Y., Qiu J., Hu W., Yao H., Ying W., Fu Y., Tong J., Chen Z., Ruan S., Ma H.	Comparative proteomic analysis reveals alterations in development and photosynthesis-related proteins in diploid and triploid rice.	BMC Plant Biol.	16(1)	199	2016		
43967	27968995	Hashida Y., Hirose T., Okamura M., Hibara K.I., Ohsugi R., Aoki N.	A reduction of sucrose phosphate synthase (SPS) activity affects sucrose/starch ratio in leaves but does not inhibit normal plant growth in rice.	Plant Sci.	253	40-49	2016		
43968	27717164	Liu Y., Jiang W., Liang Y., Zhao C., Li J.	No effect of Bt-transgenic rice litter on the meiobenthos community in field ditches.	Pest Manag. Sci.			2016		
43969	27649324	Ciarkowska A., Ostrowski M., Jakubowska A.	Abiotic stress and phytohormones affect enzymic activity of 1-O-(indole-3-acetyl)-beta-d-glucose: myo-inositol indoleacetyl transferase from rice (Oryza sativa).	J. Plant Physiol.	205	93-96	2016		
43970	27795685	Zhao M., Sun J., Xiao Z., Cheng F., Xu H., Tang L., Chen W., Xu Z., Xu Q.	Variations in DENSE AND ERECT PANICLE 1 (DEP1) contribute to the diversity of the panicle trait in high-yielding japonica rice varieties in northern China.	Breed. Sci.	66(4)	599-605	2016		
43971	27716929	Kim C.M., Han C.D., Dolan L.	RSL class I genes positively regulate root hair development in Oryza sativa.	New Phytol.	213(1)	314-323	2017	BHLH127,BHLH133,_,_,_,_,_,_,_	OsbHLH127, bHLH127, OsRSL3, RSL3,OsbHLH133, bHLH133, OsRSL8, RSL8,OsbHLH132, bHLH132, OsRSL7, RSL7,OsbHLH129, bHLH129, OsRSL4, RSL4, DLN79, OsDLN79,OsbHLH131, bHLH131, OsRSL5, RSL5, DLN93, OsDLN93,OsbHLH126, bHLH126, OsRSL2, RSL2,OsbHLH128, bHLH128, OsRSL6, RSL6, DLN190, OsDLN190,OsbHLH130, bHLH130, OsRSL9, RSL9, DLN264, OsDLN264,OsbHLH125, bHLH125, OsRSL1, RSL1 
43972	27689766	Wu F., Shi X., Lin X., Liu Y., Chong K., Thei?en G., Meng Z.	The ABCs of flower development: mutational analysis of AP1/FUL-like genes in rice provides evidence for a homeotic (A)-function in grasses.	Plant J.			2016		
43973	27644410	Tang T., Yu A., Li P., Yang H., Liu G., Liu L.	Sequence analysis of the Hsp70 family in moss and evaluation of their functions in abiotic stress responses.	Sci Rep	6	33650	2016		
43974	27628577	Shen L., Wang C., Fu Y., Wang J., Liu Q., Zhang X., Yan C., Qian Q., Wang K.	QTL editing confers opposing yield performance in different rice varieties.	J Integr Plant Biol			2016		
43975	27684490	Tan X., Zhou X., Tang Y., Lv J., Zhang L., Sun L., Yang Y., Miao Y., Jiang H., Chen G., Huang Z., Wang X.	Immunotoxicological Evaluation of Genetically Modified Rice Expressing Cry1Ab/Ac Protein (TT51-1) by a 6-Month Feeding Study on Cynomolgus Monkeys.	PLoS ONE	11(9)	e0163879			
43976	27603678	Chen C., He W., Nassirou T.Y., Zhou W., Yin Y., Dong X., Rao Q., Shi H., Zhao W., Efisue A., Jin D.	Genetic Diversity and Phenotypic Variation in an Introgression Line Population Derived from an Interspecific Cross between Oryza glaberrima and Oryza sativa.	PLoS ONE	11(9)	e0161746	2016		
43977	27600710	Liu D., Tago K., Hayatsu M., Tokida T., Sakai H., Nakamura H., Usui Y., Hasegawa T., Asakawa S.	Effect of Elevated CO2 Concentration, Elevated Temperature and No Nitrogen Fertilization on Methanogenic Archaeal and Methane-Oxidizing Bacterial Community Structures in Paddy Soil.	Microbes and Environments	31(3)	349-56	2016		
43978	27708649	Abe K., Ichikawa H.	Gene Overexpression Resources in Cereals for Functional Genomics and Discovery of Useful Genes.	Front Plant Sci	7	1359	2016		
43979	27641772	Wang R., Ning Y., Shi X., He F., Zhang C., Fan J., Jiang N., Zhang Y., Zhang T., Hu Y., Bellizzi M., Wang G.L.	Immunity to Rice Blast Disease by Suppression of Effector-Triggered Necrosis.	Curr. Biol.	26(18)	2399-411	2016	PIZT,MT2B,BZIP53,_	Piz-t, Pi-zt, Pi-z(t), Pi2/Pizt, Pizt, Pi9, OsPiz-t,OsMT2b, MT2b, OsMT-I-2c, MT-I-2c, MT2C, MT2BL, OsMT2C, OsMT2BL, MTE, OsMT2b1, OsMT2b2, MT2b1, MT2b2, MTb, met1, OsMTe, OsMT-I-2c, OsB22EL8, MTe, MT-I-2c, B22EL8,OsbZIP53, APIP5 ,OsHLM1, HLM1
43980	27585744	Chen F., Dong G., Wu L., Wang F., Yang X., Ma X., Wang H., Wu J., Zhang Y., Wang H., Qian Q., Yu Y.	A Nucleus-Encoded Chloroplast Protein YL1 Is Involved in Chloroplast Development and Efficient Biogenesis of Chloroplast ATP synthase in Rice.	Sci Rep	6	32295	2016	V1,V2,RPS15,SIG2A,RPOA,YL1,RPS15,_,VYL,V3	v1, NUS1,OsV1, OsNUS1,v2, mGmk, GMK, Gmk, pt/mtGK, pt/mt GK, OsV2, OsGMK,rps15,OsSIG2A, OsSig2A,RpoA,,rps15,atpB, AtpB, atpcf1, ATPbeta,OsClpP6, ClpP6, CLP6, NAL9, NAL9/VYL,v3, RNRL1, rnrl1, RNR1, RNRL, Osv3, OsRNRL1, OsRNR1, OsRNRL
43981	27639667	Krishnan R., Menon R.R., Likhitha, Busse H.J., Tanaka N., Krishnamurthi S., Rameshkumar N.	Novosphingobium pokkalii sp nov, a novel rhizosphere-associated bacterium with plant beneficial properties isolated from saline-tolerant pokkali rice.	Res. Microbiol.			2016		
43982	27614049	Mark Cigan A., Singh M., Benn G., Feigenbutz L., Kumar M., Cho M.J., Svitashev S., Young J.	Targeted mutagenesis of a conserved anther-expressed P450 gene confers male sterility in monocots.	Plant Biotechnol. J.			2016		
43983	27716056	Fang Y., Wang L., Wang X., You Q., Pan X., Xiao J., Wang X.E., Wu Y., Su Z., Zhang W.	Histone modifications facilitate the coexpression of bidirectional promoters in rice.	BMC Genomics	17(1)	768	2016		
43984	27746797	Agrawal L., Gupta S., Mishra S.K., Pandey G., Kumar S., Chauhan P.S., Chakrabarty D., Nautiyal C.S.	Elucidation of Complex Nature of PEG Induced Drought-Stress Response in Rice Root Using Comparative Proteomics Approach.	Front Plant Sci	7	1466	2016		
43985	27695876	Hori K., Matsubara K., Yano M.	Genetic control of flowering time in rice: integration of Mendelian genetics and genomics.	Theor. Appl. Genet.	129(12)	2241-2252	2016		
43986	27598392	Roy P.S., Rao G.J., Jena S., Samal R., Patnaik A., Patnaik S.S., Jambhulkar N.N., Sharma S., Mohapatra T.	Nuclear and Chloroplast DNA Variation Provides Insights into Population Structure and Multiple Origin of Native Aromatic Rices of Odisha, India.	PLoS ONE	11(9)	e0162268	2016		
43987	27876244	Tang M., Zhou C., Meng L., Mao D., Peng C., Zhu Y., Huang D., Tan Z., Chen C., Liu C., Zhang D.	Overexpression of OsSPL9 enhances accumulation of Cu in rice grain and improves its digestibility and metabolism.	J Genet Genomics	43(11)	673-676	2016		
43988	27795680	Nguyen H., Chen X.Y., Jiang M., Wang Q., Deng L., Zhang W.Z., Shu Q.Y.	Development and molecular characterization of a doubled haploid population derived from a hybrid between japonica rice and wide compatible indica rice.	Breed. Sci.	66(4)	552-559	2016		
43989	27688090	Suharti W.S., Nose A., Zheng S.H.	Metabolomic study of two rice lines infected by Rhizoctonia solani in negative ion mode by CE/TOF-MS.	J. Plant Physiol.	206	13-24	2016		
43990	27624829	Somssich M., Je B.I., Simon R., Jackson D.	CLAVATA-WUSCHEL signaling in the shoot meristem.	Development	143(18)	3238-48	2016		
43991	27677080	Syu C.H., Chien P.H., Huang C.C., Jiang P.Y., Juang K.W., Lee D.Y.	The growth and uptake of Ga and In of rice (Oryza sative L.) seedlings as affected by Ga and In concentrations in hydroponic cultures.	Ecotoxicol. Environ. Saf.	135	32-39	2017		
43992	27649618	Wang X., Li L., Yang Z., Zheng X., Yu S., Xu C., Hu Z.	Predicting rice hybrid performance using univariate and multivariate GBLUP models based on North Carolina mating design II.	Heredity			2016		
43993	27729916	Vandamme E., Wissuwa M., Rose T., Dieng I., Drame K.N., Fofana M., Senthilkumar K., Venuprasad R., Jallow D., Segda Z., Suriyagoda L., Sirisena D., Kato Y., Saito K.	Genotypic Variation in Grain P Loading across Diverse Rice Growing Environments and Implications for Field P Balances.	Front Plant Sci	7	1435	2016		
43994	18759033	Zhou B., Peng K., Zhaohui C., Wang S., Zhang Q.	The defense-responsive genes showing enhanced and repressed expression after pathogen infection in rice (Oryza sativa L.).	Science in China. Series C, Life sciences	45(5)	449-67	2002	_	OsAFC2, AFC2, OsDR11, DR11, OsDR11L, OsDR11S
43995	26190741	Zhang H., Xia R., Blake C Meyers, Walbot V.	Evolution, functions, and mysteries of plant ARGONAUTE proteins.	Curr. Opin. Plant Biol.	27	84-90	2015	_	OsAGO2b, AGO2b
43996	18612237	Young-Soon Cha, Ji H., Doh-Won Yun, Byoung-Ohg Ahn, Myung Chul Lee, Seok-Cheol Suh, Chun Seok Lee, Eok Keun Ahn, Yong-Hee Jeon, Il-Doo Jin, Jae-Keun Sohn, Hee-Jong Koh, Moo-Young Eun	Fine mapping of the rice Bph1 gene, which confers resistance to the brown planthopper (Nilaparvata lugens stal), and development of STS markers for marker-assisted selection.	Mol. Cells	26(2)	146-51	2008	BPH1	Bph1
43997	23136524	Heang D., Sassa H.	An atypical bHLH protein encoded by POSITIVE REGULATOR OF GRAIN LENGTH 2 is involved in controlling grain length and weight of rice through interaction with a typical bHLH protein APG	Breed. Sci.	62	133-141	2012	ILI5,PIL16,BU1	ILI5, OsILI5, PGL2, OsPGL2, Os170, OsBUL1, BUL1, ILI5/PGL2, OsbHLH170, bHLH170,APG, OsPIL16, OsbHLH106,ILI4, OsILI4 , OsBU1, BU1/ILI4, OsbHLH172, bHLH172
43998	0	Li N., Kong L., Zhou W., Zhang X., Wei S., Ding X., Chu Z.	Overexpression of Os2H16 enhances resistance to phytopathogens and tolerance to drought stress in rice	Plant Cell, Tissue and Organ Culture (PCTOC)	115(3)	429-441	2013	_	Os2H16, 2H16
43999	15695464	Ohwaki Y., Makiko Kawagishi-Kobayashi, Wakasa K., Fujihara S., Yoneyama T.	Induction of class-1 non-symbiotic hemoglobin genes by nitrate, nitrite and nitric oxide in cultured rice cells.	Plant Cell Physiol.	46(2)	324-31	2005	Hb2,Hb1	HB2, OsHB2, OsNSHB2, hb2, GLB1b, ORYsa GLB1b, OsPgb1.2, Pgb1.2,HB1, OsHB1, GLB1A, rHb1, ORYsa GLB1a, nsHb1, OsNSHB1, hb1, nsHb, OsPgb1.1, Pgb1.1
44000	28211849	Hu K., Cao J., Zhang J., Xia F., Ke Y., Zhang H., Xie W., Liu H., Cui Y., Cao Y., Sun X., Xiao J., Li X., Zhang Q., Wang S.	Improvement of multiple agronomic traits by a disease resistance gene via cell wall reinforcement.	Nat Plants	3	17009	2017	BC7,XA4,BC6,EXPA1,JAR2,CESA7,EXPA5	OsCesA4, OsCESA4, CESA4, OS_CESA04, BC11, bc7t, Bc7(t), bc-7, OsCesA 4, CesA4, FC17/CESA4, FC17, OsFC17,Xa4, Xa4(Xa4a), Xa-4, Xa4-a, WAK, wak, xa4,Bc6*, Bc6, OsCesA9, CESA9, OsCESA9, OS_CESA09, OsCesA 9, CesA9, BC88, SDBC1, OsSDBC1,OsEXP1, EXPA1, OsEXPA1, OsaEXPa1.16, RiExA,OsJAR2, OsGH3.3, GH3.3, OsGH3-3, JAR2/GH3-3, GH3-3, OsGH3.3/OsJAR2,OsCesA7, OsCESA7, OS_CESA07, OsCesA 7, CesA7,OsEXPA5, OsEXP5, osaEXPa1.20
44001	28442795	Stewart C.N.	Becoming weeds.	Nat. Genet.	49(5)	654-655	2017		
44002	28369039	Li L.F., Li Y.L., Jia Y., Caicedo A.L., Olsen K.M.	Signatures of adaptation in the weedy rice genome.	Nat. Genet.	49(5)	811-814	2017	C,BH4,WX1,AN1,LG1,SH4,PROG1,RC,QSH1,LABA1,COLD1,BHC	C, Cp, OsC1, Os-C1, C1, OsMyb6, Myb6, OsPL6, PL6, OsGL1E, GL1E, Os2R_MYB63, 2R_MYB63, OsC1PLSr, C1PLSr,Bh4, OsBH4, OsATL14, ATL14,wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx,An-1, OsbHLH093, RAE1, An-1/RAE1, RAE1/An-1, OsRAE1, OsAn-1, OgRAE1,SPL8, OsSPL8, OsLG1,sh4, SH4, SHAT2, SHA1, qSH4, QSH4, OsSh4, Sh4, Osh4, OsMSL23, MSL23,OsPROG1, ZOS7-02, OsZOS7-02,Rc, OsbHLH017, OsbHLH17, SD7-1, qSD7-1/qPC7, OsGL3C, GL3C,qSH1, qsh1, qSH-1, RIL1, OsRIL1 ,LOGL6, OsLOGL6, An-2,OsCOLD1,Ph=Bhc(Po), Bhc, Po, Ph, Bh3, PPO, Phr1, BH1
44003	28390989	Zhang M., Chen Y., Nie L., Jin X., Fu C., Yu L.	Molecular, structural, and phylogenetic analyses of Taxus chinensis JAZs.	Gene			2017		
44004	28407265	Xu J., Shi S., Wang L., Tang Z., Lv T., Zhu X., Ding X., Wang Y., Zhao F.J., Wu Z.	OsHAC4 is critical for arsenate tolerance and regulates arsenic accumulation in rice.	New Phytol.			2017	PHF1,HAC4	OsPHF1, OsWD40-137, OsSEC12,OsStr8, STR8, OsHAC4
44005	28385155	Yu J., Xiong H., Zhu X., Zhang H., Li H., Miao J., Wang W., Tang Z., Zhang Z., Yao G., Zhang Q., Pan Y., Wang X., Rashid M.A.R., Li J., Gao Y., Li Z., Yang W., Fu X., Li Z.	OsLG3 contributing to rice grain length and yield was mined by Ho-LAMap.	BMC Biol.	15(1)	28	2017	ERF62	OsERF#062, OsERF062, OsERF62, AP2/EREBP#125, AP2/EREBP125, AP2-125, OsLG3, LG3, OsLG3/OsAP2-125, OsAP2-125, WAP1, OsWAP1, OsSTAP1, STAP1, ERF1, OsERF1
44006	28065924	Wang B., Wei H., Xue Z., Zhang W.H.	Gibberellins regulate iron deficiency-response by influencing iron transport and translocation in rice seedlings (Oryza sativa).	Ann. Bot.	119(6)	945-956	2017	NAAT1,NAS2,YSL15,YSL2,IRO2,EUI1,DMAS1,NAS1	OsNAAT1,OsNAS2, OsNAS1,OsYSL15, OsYs7,OsYSL2, Os-YSL2, OsYs6 ,OsIRO2, OsbHLH056, bHLH056, bHLH56, OsbHLH56,eui1, GA16,17ox, CYP714D1, EUI, CYP714D1/EUI, OsEUI, LG5, OsLG5,OsDMAS1, OsAKR5, AKR5,OsNAS1
44007	28413359	Morino K., Kimizu M., Fujiwara M.	Disulfide proteomics of rice cultured cells in response to OsRacl and probenazole-related immune signaling pathway in rice.	Proteome Sci	15	6	2016	APX1,_,TRXH,AMY3E,RACK1,RAC1,FLO16,_	OsAPX1, APXa, OsAPXa, OsAPx01, OsAPx1, OSAPX1, APx1, cAPX, APX2, cAPXa, OscAPXa,OsCSP2, CPS2,trxh, Trx-H, OsTRXh1, TRXh1, OsTrxh1, Os1, OsTrx23, Trx23, RPP13-1,Amy3D/E*(RAmy3D/E), alpha Amy8, alphaAmy8, AmyII-3, AMY1.4, Amy3E, Amy3D/E*, RAmy3D/E, Amy9, RAmy3E, alphaAmy8-C, AMY3E/AMY1.4, OsAmy3E, OsRamy3E,RACK1A, RWD, OsWD40-21, OsRACK1, OsRACK1A,OsRAC1, OsRac1, Os Rac1, Rac1, Os-Rac1,CMDH, OscMDH, cMDH, OsMDH, MDH, OsFLO16, OsMDH10.1, MDH10.1, OsLdh11, Ldh11,OsAKR, AKR, OsAKR3, AKR3
44008	28444616	Kim J.S., Chae S., Jun K.M., Pahk Y.M., Lee T.H., Chung P.J., Kim Y.K., Nahm B.H.	Genome-wide identification of grain filling genes regulated by the OsSMF1 transcription factor in rice.	Rice (N Y)	10(1)	16	2017	RPBF,_,_,NAC24,GLB1,WX1,RISBZ1,PPLAIIALPHA	OsDof3, OsDOF3, OsEnS-34, OsDof10, Dof10, OsDof-10, OsDOF1, DOF1, DOF3, OsRPBF, OsDOF7,OsEnS-44, EnS-44, OsEnS44, EnS44,OsEnS-146, EnS-146, OsEnS146, EnS146 ,NAC94, ONAC024, ONAC24, OsNAC024, NAC024,glb1(t)*, glb1(t), glb1, alpha-Glb, Glb-1, OsGlb1, Glb1, Glb, OsEnS-77,wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx,OsbZIP58, bZIP58, OsEnS-92, OsSMF1, SMF1, OsRISBZ1, RISBZ1/bZIP58,OsEnS-20, OspPLAIIalpha, pPLAIIalpha, PAT2, PAT
44009	28471368	Guo Z.H., Chan W.H.Y., Kong G.K.W., Hao Q., Chye M.L.	The first plant acyl-CoA-binding protein structures: the close homologues OsACBP1 and OsACBP2 from rice.	Acta Crystallogr D Struct Biol	73(Pt 5)	438-448	2017	ACBP1,ACBP2	OsACBP1,OsACBP2
44010	28414264	Deng C., Ye H., Fan M., Pu T., Yan J.	The Rice Transcription Factors OsICE Confer Enhanced cold tolerance in Transgenic Arabidopsis.	Plant Signal Behav		0	2017	MYBS3,ICE2,BHLH2	OsMYBS3,OsbHLH001, bHLH001, OsbHLH1, bHLH1, OsICE2,OsbHLH002, bHLH002, OsbHLH2, bHLH2, OsICE1, ICE1, OsbHLH002/OsICE1
44011	28482332	Lee S.C., Kim S.J., Han S.K., An G., Kim S.R.	A gibberellin-stimulated transcript, OsGASR1, controls seedling growth and alpha-amylase expression in rice.	J. Plant Physiol.	214	116-122	2017	_	OsGASR1, GASR1
44012	28451936	Zhang W., Wu L., Ding Y., Yao X., Wu X., Weng F., Li G., Liu Z., Tang S., Ding C., Wang S.	Nitrogen fertilizer application affects lodging resistance by altering secondary cell wall synthesis in japonica rice (Oryza sativa).	J. Plant Res.			2017	CESA7,BC7,FC1,GH2,4CL3,PAL1,CCR20,ROMT9,BC6	OsCesA7, OsCESA7, OS_CESA07, OsCesA 7, CesA7,OsCesA4, OsCESA4, CESA4, OS_CESA04, BC11, bc7t, Bc7(t), bc-7, OsCesA 4, CesA4, FC17/CESA4, FC17, OsFC17,OsCAD7, fc1, CAD7,gh2, CAD2, CAD, OsCAD2, OsGH2 ,Os4CL3, Os4CL2, Os4CL, 4CL2, 4CL,OsPAL, Pal1*, Pal1, PAL, Pal_1, PalI, PAL2, OsPAL01, PAL01, OSPAL, CP-1, GP-1, OsPAL1, PAL3, OsPAL3,OS-CCR, OsCCR, CCR, OsCCR20, OsCCR14, CCR14 ,COMT, OsCOMT, ROMT-9, OsCOMT1, OsCAldOMT1, CAldOMT1, OsOMT, OsCOMT15, COMT15,Bc6*, Bc6, OsCesA9, CESA9, OsCESA9, OS_CESA09, OsCesA 9, CesA9, BC88, SDBC1, OsSDBC1
44013	28385728	Lam P.Y., Tobimatsu Y., Takeda Y., Suzuki S., Yamamura M., Umezawa T., Lo C.	Disrupting flavone synthase II Alters Lignin and Improves Biomass Digestibility.	Plant Physiol.			2017	CYP93G1,CYP75B4	OsCYP93G1, OsFNSII, FNSII, OsCYP71S4, CYP71S4,OsCYP75B4, OsC5'H, C5'H, OsF3'H9, F3'H9, OsCYP71P2, CYP71P2
44014	28401568	Wu J., Wang Y., Kim S.G., Jung K.H., Gupta R., Kim J., Park Y., Kang K.Y., Kim S.T.	A secreted chitinase-like protein (OsCLP) supports root growth through calcium signaling in Oryza sativa.	Physiol Plant			2017	_,SPK,CRO1	OsCLP, CLP,CDPK 1, CDPK1, CDPK23, OsCDPK23, OsCPK23, CPK23, OsSPK,OsCRO1, CRT, CRT-1, OsCRT-1, OsCRT1, CRT1
44015	28382520	Yang X., Liang W., Chen M., Zhang D., Zhao X., Shi J.	Rice fatty Acyl-CoA Synthetase OsACOS12 is required for tapetum programmed cell death and male fertility.	Planta			2017	CYP703A3,EAT1,API5,CYP704B2,GAMYB,MS2,TDR,ACS9	OsCYP703A3,OsEAT1, OsbHLH141, EAT1/DTD1, bHLH141, DTD1, DTD, DLN120, OsDLN120,API5, Os API5, OsAPI5,OsCYP704B2,OsGAMYB, GAM1, OsGAMyb, Os-MYBGA, Os GAMYB, OsMYBGA, MYBGA, Os2R_MYB15, 2R_MYB15 ,OsMS2, OsDPW, DPW, DPW1, OsDPW1, OsFAR2, FAR2,tdr, OsbHLH005, bHLH005, OsbHLH5, bhlh5, TDR1, OsTDR, OsTDR1, OsMYC5, MYC5,OsACS9, 4CL4, OsACOS12, ACOS12 
44016	28424874	Uji Y., Akimitsu K., Gomi K.	Identification of OsMYC2-regulated senescence-associated genes in rice.	Planta			2017	AGA1,AMTR1,TIFY10C,HAC1;1 ,BHLH9,NAC10,_	Osh69, h69, OsAGA1, OsRS6, RS6,Osh36, OsH36, H36, OsAMTR1,OsJAZ7, JAZ7, OsJAZ 8, OsJAZ8, Os-JAZ8, JAZ8, OsTIFY10c, OsTIFY10c/OsJAZ8,OsStr5, STR5, OsHAC1;1,OsbHLH009, bHLH009, OsMYC2, MYC2,ONAC010, ONAC10, OsSTA199, OsNAC3, NAC3,OsSAG12, SAG12
44017	28421330	Takeda Y., Koshiba T., Tobimatsu Y., Suzuki S., Murakami S., Yamamura M., Rahman M.M., Takano T., Hattori T., Sakamoto M., Umezawa T.	Regulation of CONIFERALDEHYDE 5-HYDROXYLASE expression to modulate cell wall lignin structure in rice.	Planta			2017	F5HL2,_,_	OsF5HL2, CYP84A6, OsCYP84A6, OsF5H1, F5H1, OsCYP71AB10, CYP71AB10,OsF5HL, F5HL, CYP84A7 ,OsF5H1, F5H1, OsCAld5H1, CAld5H1, CYP84A5, OsCYP84A5
44018	28186255	Ohashi M., Ishiyama K., Kojima S., Kojima M., Sakakibara H., Yamaya T., Hayakawa T.	Lack of Cytosolic Glutamine Synthetase1;2 Activity Reduces Nitrogen-Dependent Biosynthesis of Cytokinin Required for axillary bud Outgrowth in Rice Seedlings.	Plant Cell Physiol.	58(4)	679-690	2017	GLN1;2,IPT4	OsGLN1;2, GSr, RGS8, OsGS1;2, GS1;2, GS1, OsGS1-2, GS1-2, OsGS1.2, GS1.2,OsIPT4
44019	28412545	Shafiq S., Chen C., Yang J., Cheng L., Ma F., Widemann E., Sun Q.	DNA Topoisomerase 1 prevents R-loop accumulation to modulate auxin-regulated root development in rice.	Mol Plant			2017	ARF24,TOP1,ARF7A,MDR12,ARF10,RAU4,ARF1,MDR13,MDR10,PIN1A,ABCB13	OsARF24,OsTOP1,OsARF7a, OsARF19, ARF19, OsARF7,OsABCB16, ABCB16, OsPGP16, OsMDR12,OsARF10,OsLAX4, OsRAU4, OsAUX4, LAX4, AUX4,OsARF1, arf1, OsARF23, ARF23,OsABCB14, ABCB14, OsPGP14, OsMDR13, OsABCB14_1, OsABCB14_2,OsABCB8, ABCB8, OsPGP8, OsMDR10, OsISC29,PIN1C, OsPIN1C, OsPIN1c, OsPIN1a,OsABCB13, OsPGP13
44020	28430017	Peris-Peris C., Serra-Cardona A., S?nchez-Sanuy F., Campo S., Ari?o J., San Segundo B.	Two Nramp6 Isoforms Function as Iron and Manganese Transporters and Contribute to disease resistance in Rice.	Mol. Plant Microbe Interact.	30(5)	385-398	2017	PR1A,MIR7695,NRAMP6,POX3006,PR10B	OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1, OsPR1b, PR1alpha, OsPR1alpha,miR7695, osa-miR7695, osa-MIR7695,OsNRAMP6, Nramp6, l-NRAMP6, s-NRAMP6, OsNramp6.8, OsNramp1,POX3006, prx114, Osprx114, PO-C1, POC-1, POC1, OsPOC1, Prx14, OsPrx14, POD3006, OsPOD3006,RPR10b, PR-10b, PR10b, PBZ1, PBZ-1, OsPBZc, OsPR10b, BetV, OsBetV
44021	28204743	Udomchalothorn T., Plaimas K., Sripinyowanich S., Boonchai C., Kojonna T., Chutimanukul P., Comai L., Buaboocha T., Chadchawan S.	OsNucleolin1-L Expression in Arabidopsis Enhances Photosynthesis via Transcriptome Modification under Salt Stress Conditions.	Plant Cell Physiol.	58(4)	717-734	2017	LHCB1.1,LHCB2.1,_,_,NUC1	Lhcb1.1 OsLhcb1.1, lhcB,LHCB, LHCP II, Lhcb2, OsLhcb2, Lhcb2.1, OsLhcb2.1 ,,Cyt b6, OsCytb6, Cytb6,OsNUC1, OsNUC1-S, OsNUC1-L
44022	28403192	Chen J., Lin B., Huang Q., Hu L., Zhuo K., Liao J.	A novel Meloidogyne graminicola effector, MgGPP, is secreted into host cells and undergoes glycosylation in concert with proteolysis to suppress plant defenses and promote parasitism.	PLoS Pathog.	13(4)	e1006301	2017		
44023	28304228	Wang J., Tian D., Gu K., Yang X., Wang L., Zeng X., Yin Z.	Induction of Xa10-like Genes in Rice Cultivar Nipponbare Confers disease resistance to Rice Bacterial Blight.	Mol. Plant Microbe Interact.		MPMI11160229R	2017	XA23,_	Xa23(t)*, Xa23(t), Xa23, Xa23-Ni ,Xa10-Ni
44024	28429296	Selby-Pham J., Lutz A., Moreno-Moyano LT., Boughton B.A., Roessner U., Johnson A.A.T.	Diurnal Changes in Transcript and Metabolite Levels during the Iron Deficiency Response of Rice.	Rice (N Y)	10(1)	14	2017		
44025	28446247	Kasajima I.	Difference in oxidative stress tolerance between rice cultivars estimated with chlorophyll fluorescence analysis.	BMC Res Notes	10(1)	168	2017		
44026	28397859	Shen B.R., Zhu C.H., Yao Z., Cui L.L., Zhang J.J., Yang C.W., He Z.H., Peng X.X.	An optimized transit peptide for effective targeting of diverse foreign proteins into chloroplasts in rice.	Sci Rep	7	46231	2017		
44027	28448202	Wang H.M., Tong C.G., Jang S.	Current progress in orchid flowering/flower development research.	Plant Signal Behav		0	2017		
44028	28383047	Liu Z., Yuan G., Liu S., Jia J., Cheng L., Qi D., Shen S., Peng X., Liu G.	Identified of a novel cis-element regulating the alternative splicing of LcDREB2.	Sci Rep	7	46106	2017		
44029	28458046	Birkenbihl R.P., Liu S., Somssich I.E.	Transcriptional events defining plant immune responses.	Curr. Opin. Plant Biol.	38	1-9	2017		
44030	28400493	Qin C., Chen W.W., Shen J., Cheng L., Akande F., Zhang K., Yuan C., Li C., Zhang P., Shi N., Cheng Q., Liu Y., Jackson S., Hong Y.	A Virus-induced Assay for Functional Dissection and Analysis of Monocot and Dicot Flowering Time genes.	Plant Physiol.			2017		
44031	28413161	Zhang Q.J., Gao L.Z.	Rapid and Recent Evolution of LTR Retrotransposons Drives Rice Genome Evolution During the Speciation of AA- Genome Oryza Species.	G3 (Bethesda)			2017		
44032	28417193	Wang Y., Liu H., Zhu D., Gao Y., Yan H., Xiang Y.	Genome-wide analysis of VQ motif-containing proteins in Moso bamboo (Phyllostachys edulis).	Planta			2017		
44033	28393269	Parveda M., Kiran B., Punita D.L., Kavi Kishor PB.	Overexpression of SbAP37 in rice alleviates concurrent imposition of combination stresses and modulates different sets of leaf protein profiles.	Plant Cell Rep.	36(5)	773-786	2017		
44034	28401463	Priyanka, Agrawal T., Kotasthane A.S., Kosharia A., Kushwah R., Zaidi N.W., Singh U.S.	Crop specific plant growth promoting effects of ACCd enzyme and siderophore producing and cynogenic fluorescent Pseudomonas.	3 Biotech	7(1)	27	2017		
44035	28340002	Mishra N., Sun L., Zhu X., Smith J., Prakash Srivastava A., Yang X., Pehlivan N., Esmaeili N., Luo H., Shen G., Jones D., Auld D., Burke J., Payton P., Zhang H.	Overexpression of the Rice SUMO E3 ligase Gene OsSIZ1 in Cotton Enhances Drought and Heat Tolerance, and Substantially Improves Fiber Yields in the Field under Reduced Irrigation and Rainfed Conditions.	Plant Cell Physiol.	58(4)	735-746	2017		
44036	28417425	Ju Y., Tian H., Zhang R., Zuo L., Jin G., Xu Q., Ding X., Li X., Chu Z.	Overexpression of OsHSP18.0-CI Enhances Resistance to Bacterial Leaf Streak in Rice.	Rice (N Y)	10(1)	12	2017	HSP18.0	OsHSP18.0-CI, HSP18.0-CI, OsHsp18.0, OsHSP18.0, Oshsp18.0, OsSHSP1, SHSP1, OsMSR3, MSR3, OsHSP20, HSP20, OsHSP18.6, HSP18.6
44037	28454637	Ge J., Cui K., Yan H., Li Y., Chai Y., Liu X., Cheng J., Yu X.	Uptake and translocation of imidacloprid, thiamethoxam and difenoconazole in rice plants.	Environ. Pollut.			2017		
44038	28425127	Gupta B.K., Sahoo K.K., Ghosh A., Tripathi A.K., Anwar K., Das P., Singh A.K., Pareek A., Sopory S.K., Singla-Pareek SL.	Manipulation of glyoxalase pathway confers tolerance to multiple stresses in rice.	Plant Cell Environ.			2017		
44039	28398878	Amaral Carneiro G., Matic S., Ortu G., Garibaldi A., Spadaro D., Gullino M.L.	Development and validation of a TaqMan real time PCR assay for the specific detection and quantification of Fusarium fujikuroi in rice plants and seeds.	Phytopathology			2017		
44040	28445706	Alagappan L.P., Shanmugasundaram P., Ramachandra B.L., Gumpu M.B., Nesakumar N., Jayanth Babu K., Vedantham S., Balaguru Rayappan JB.	Fabrication of electrochemical biosensor with vanadium pentoxide nano-interface for the detection of methylglyoxal in rice.	Anal. Biochem.	528	19-25	2017		
44041	28407080	Mangrauthia S.K., Bhogireddy S., Agarwal S., Prasanth V.V., Voleti S.R., Neelamraju S., Subrahmanyam D.	Genome-wide changes in microRNA expression during short and prolonged heat stress and recovery in contrasting rice cultivars.	J. Exp. Bot.			2017		
44042	28420345	Yuan Y., Zhang Q., Zeng S., Gu L., Si W., Zhang X., Tian D., Yang S., Wang L.	Selective sweep with significant positive selection serves as the driving force for the differentiation of japonica and indica rice cultivars.	BMC Genomics	18(1)	307	2017		
44043	28451819	Yue E., Liu Z., Li C., Li Y., Liu Q., Xu J.H.	Overexpression of miR529a confers enhanced resistance to oxidative stress in rice (Oryza sativa L.).	Plant Cell Rep.			2017		
44044	28494393	Ashraf U., Hussain S., Anjum S.A., Abbas F., Tanveer M., Noor M.A., Tang X.	Alterations in growth, oxidative damage, and metal uptake of five aromatic rice cultivars under lead toxicity.	Plant Physiol. Biochem.	115	461-471	2017		
44045	28455510	Yousaf M., Li J., Lu J., Ren T., Cong R., Fahad S., Li X.	Effects of fertilization on crop production and nutrient-supplying capacity under rice-oilseed rape rotation system.	Sci Rep	7(1)	1270	2017		
44046	28424214	Zhang B., Xu W., Liu X., Mao X., Li A., Wang J., Chang X., Zhang X., Jing R.	Functional conservation and divergence among homoeologs of TaSPL20 and TaSPL21, two SBP-box genes governing yield-related traits in hexaploid wheat.	Plant Physiol.			2017		
44047	28168930	Selisana S.M., Yanoria M.J., Quime B., Chaipanya C., Lu G., Opulencia R., Wang G.L., Mitchell T., Correll J., Talbot N.J., Leung H., Zhou B.	Avirulence (AVR) Gene-Based Diagnosis Complements Existing Pathogen Surveillance Tools for Effective Deployment of Resistance (R) Genes Against Rice blast disease.	Phytopathology	107(6)	711-720	2017		
44048	28438013	Lee H.H., Kang N., Park I., Park J., Kim I., Kim J., Kim N., Lee J.Y., Seo Y.S.	Characterization of Newly Bred Cordyceps militaris Strains for Higher Production of Cordycepin through HPLC and URP-PCR Analysis.	J. Microbiol. Biotechnol.			2017		
44049	28106309	Wang D., Qu Z., Yang L., Zhang Q., Liu Z.H., Do T., Adelson D.L., Wang Z.Y., Searle I., Zhu J.K.	Transposable elements (TEs) contribute to stress-related long intergenic noncoding RNAs in plants.	Plant J.	90(1)	133-146	2017		
44050	28378144	Shoba D., Raveendran M., Manonmani S., Utharasu S., Dhivyapriya D., Subhasini G., Ramchandar S., Valarmathi R., Grover N., Krishnan S.G., Singh A.K., Jayaswal P., Kale P., Ramkumar M.K., Mithra S.V.A., Mohapatra T., Singh K., Singh N.K., Sarla N., Sheshshayee M.S., Kar M.K., Robin S., Sharma R.P.	Development and Genetic Characterization of A Novel Herbicide (Imazethapyr) Tolerant Mutant in Rice (Oryza sativa L.).	Rice (N Y)	10(1)	10	2017		
44051	28397857	Razzaque S., Haque T., Elias S.M., Rahman M.S., Biswas S., Schwartz S., Ismail A.M., Walia H., Juenger T.E., Seraj Z.I.	Reproductive stage physiological and transcriptional responses to salinity stress in reciprocal populations derived from tolerant (Horkuch) and susceptible (IR29) rice.	Sci Rep	7	46138	2017		
44052	28400567	Zhang Y., Zhou L., Shen X., Chen D., Wu W., Zhan X., Liu Q., Zhu A., Lou X., Xu H., Cheng S., Cao L.	Genetic dissection of yield traits in super hybrid rice Xieyou9308 using both unconditional and conditional genome-wide association mapping.	Sci Rep	7(1)	824	2017		
44053	28430356	Demirci Y., Zhang B., Unver T.	CRISPR/Cas9: an RNA-guided highly precise synthetic tool for plant genome editing.	J. Cell. Physiol.			2017		
44054	28103409	Zhang X.Y., Zhang X., Zhang Q., Pan X.X., Yan L.C., Ma X.J., Zhao W.Z., Qi X.T., Yin L.P.	Zea mays Fe deficiency-related 4 (ZmFDR4) functions as an iron transporter in the plastids of monocots.	Plant J.	90(1)	147-163	2017		
44055	28461082	Sun L., Yang J., Fang H., Xu C., Peng C., Huang H., Lu L., Duan D., Zhang X., Shi J.	Mechanism study of sulfur fertilization mediating copper translocation and biotransformation in rice (Oryza sativa L.) plants.	Environ. Pollut.			2017		
44056	28422161	Weng F., Zhang W., Wu X., Xu X., Ding Y., Li G., Liu Z., Wang S.	Impact of low-temperature, overcast and rainy weather during the reproductive growth stage on lodging resistance of rice.	Sci Rep	7	46596	2017		
44057	28446328	Bucher R., Veyel D., Willmitzer L., Krattinger S., Keller B., Biglera L.	Combined GC- and UHPLC-HR-MS Based Metabolomics to Analyze Durable Anti-fungal Resistance Processes in Cereals.	Chimia (Aarau)	71(4)	156-159	2017		
44058	28409435	Nisarga K.N., Vemanna R.S., Kodekallu Chandrashekar B., Rao H., Vennapusa A.R., Narasimaha A., Makarla U., Basavaiah M.R.	aldo-ketoreductase 1 (AKR1) improves seed longevity in tobacco and rice by detoxifying reactive cytotoxic compounds generated during ageing.	Rice (N Y)	10(1)	11	2017		
44059	28339724	Chen X., Liao D., Yang X., Ji M., Wang S., Gu M., Chen A., Xu G.	Three cis-Regulatory Motifs, AuxRE, MYCRS1 and MYCRS2, are Required for Modulating the Auxin- and Mycorrhiza-Responsive Expression of a Tomato GH3 Gene.	Plant Cell Physiol.	58(4)	770-778	2017		
44060	28378532	Selvaraj M.G., Ishizaki T., Valencia M., Ogawa S., Dedicova B., Ogata T., Yoshiwara K., Maruyama K., Kusano M., Saito K., Takahashi F., Shinozaki K., Nakashima K., Ishitani M.	Overexpression of an Arabidopsis thaliana galactinol synthase gene improves drought tolerance in transgenic rice and increased grain yield in the field.	Plant Biotechnol. J.			2017		
44061	28378445	Liu Z., Lin S., Shi J., Yu J., Zhu L., Yang X., Zhang D., Liang W.	Rice No pollen 1 (NP1) is required for anther cuticle formation and pollen exine patterning.	Plant J.			2017	ABCG26,NP1 ,ABCG15,MS2,CYP703A3,CYP704B2	OsABCG26,OS-ACE, OsNP1, OsTMS18, TMS18,OsABCG15, PDA, PDA1, OsABCG15/PDA1,OsMS2, OsDPW, DPW, DPW1, OsDPW1, OsFAR2, FAR2,OsCYP703A3,OsCYP704B2
44062	28339688	Yamakawa H., Hirai-Kimura R., Nakata Y., Nakata M., Kuroda M., Yamaguchi T.	An Activity-Staining Method on Filtration Paper Enables High-Throughput Screening of Temperature-Sensitive and Inactive Mutations of Rice alpha-amylase for Improvement of Rice Grain Quality.	Plant Cell Physiol.	58(4)	658-667	2017		
44063	28416245	Hua Y., Wang C., Huang J., Wang K.	A simple and efficient method for CRISPR/Cas9-induced mutant screening.	J Genet Genomics	44(4)	207-213	2017		
44064	28365842	Li Y., Huang J., Song X., Zhang Z., Jiang Y., Zhu Y., Zhao H., Ni D.	An RNA-Seq transcriptome analysis revealing novel insights into aluminum tolerance and accumulation in tea plant.	Planta			2017		
44065	28405745	Zhang Y.Y., Hao Y.Y., Wang Y.H., Wang C.M., Wang Y.L., Long W.H., Wang D., Liu X., Jiang L., Wan J.M.	Lethal albinic seedling, encoding a threonyl-tRNA synthetase, is involved in development of plastid protein synthesis system in rice.	Plant Cell Rep.			2017	LAS	OsLAS
44066	28455404	Leng Y., Yang Y., Ren D., Huang L., Dai L., Wang Y., Chen L., Tu Z., Gao Y., Li X., Zhu L., Hu J., Zhang G., Gao Z., Guo L., Kong Z., Lin Y., Qian Q., Zeng D.	A rice pectate lyase-LIKE gene is required for plant growth and leaf senescence.	Plant Physiol.			2017	WRKY72,CATA,GABA-T,SODA1,CDC2-1,SODB,APX1,_,PORA,NAC6,EXPB2,APX2,WRKY23,AOX1A,AOX1B,DEL1,MCM5,SGR,CYCT1;1,CDKF;1,PME6,ATP6,AMTR1,CATB	OsWRKY72, WRKY-72,CATA1, Cat A1*, OSCAT-A, Cat2, CatA1, CAT-A, OsCatA, OsCAT, CAT, catA, OSCATA, OsCATc, OsCATA, OsCAT1A, CAT1, OsCAT1, OsCATC, OsCAT2,Osl2, l2, OsGABA-T,SodA1, OsSODA1, Mn-SOD, Mn- SOD, OsMSD, MnSOD, OsMnSOD, MnSOD1, OsMnSOD1,cdc2Os-1, CDC2Os-1, CDKA-1, CDKA;1, Orysa;CDKA;1, OsCDKA;1, cdc2Os1, Rcdc2-1, OsCDKA1, CDKA1, CDC20S-1, OsCDC20S-1 ,SodB, Fe-SOD, Fe- SOD, OsFe-SOD, Fe+-SOD, OsFe+-SOD, OsFe-SODa, OsFe-SODb, OsFeSODb, FeSODb, OsFSD1.2, FSD1.2, FeSOD2, OsFSD2, FSD2, OsFSD1, FSD1, ALM1, OsALM1,OsAPX1, APXa, OsAPXa, OsAPx01, OsAPx1, OSAPX1, APx1, cAPX, APX2, cAPXa, OscAPXa,CAK1, MAT1, OsCAK1, OsMAT1, CDKA1, OsCDKA1,OsPorA, OsPORA,OsNAC6, ONAC048, NAC48, SNAC2, SNAC2/OsNAC6, OsNAC6/ONAC048, OsSNAC2, SNAC-2, OsSNAC-2, OsNAC2,OsEXPB2, OsaEXPb1.9, EXPb1.9,OsAPX2, OsAPx02, APXb, OsAPx2, OSAPX2, APx2, cAPX, OsAPX1, APX1,OsWRKY23,Ao1-1, AOX1a, OsAOX1a, AOX 1a,AOX1b, OsAOX1b,OsPLL12, PLL12,OsMCM5,sgr(t), sgr, OsSGR, OsSgr, SGR1, OsSGR1,CycT1;1, CycT1;os;1, Orysa;CycT1;1, CYCT1,CDKF;1, Orysa;CDKF;1, CDKF1, CDKF-1/CAK1AT, CDKF-1, CAK1AT, CAK1A,OsPME6, OsPME1,atp6, OsPOX1, prx3, POX1,Osh36, OsH36, H36, OsAMTR1,CatB, CAT-B, OsCatB, OsCATB, OsCAT1B, CAT1B, CAT2, OsCAT2
44067	28378373	Choi G.H., Lee H.Y., Back K.	Chloroplast overexpression of rice caffeic acid O-methyltransferase increases melatonin production in chloroplasts via the 5-methoxytryptamine pathway in transgenic rice plants.	J. Pineal Res.			2017		
44068	28418377	Marroquin-Guzman M., Hartline D., Wright J.D., Elowsky C., Bourret T.J., Wilson R.A.	The Magnaporthe oryzae nitrooxidative stress response suppresses rice innate immunity during blast disease.	Nat Microbiol	2	17054	2017		
44069	28394310	Liu J., Chen J., Zheng X., Wu F., Lin Q., Heng Y., Tian P., Cheng Z., Yu X., Zhou K., Zhang X., Guo X., Wang J., Wang H., Wan J.	GW5 acts in the brassinosteroid signalling pathway to regulate grain width and weight in rice.	Nat Plants	3	17043	2017		
44070	28404726	Ito S., Yamagami D., Umehara M., Hanada A., Yoshida S., Sasaki Y., Yajima S., Kyozuka J., Ueguchi-Tanaka M., Matsuoka M., Shirasu K., Yamaguchi S., Asami T.	Regulation of strigolactone biosynthesis by gibberellin signaling.	Plant Physiol.			2017		
44071	28394334	Bakshi A., Moin M., Kumar M.U., Reddy A.B., Ren M., Datla R., Siddiq E.A., Kirti P.B.	Corrigendum: Ectopic expression of Arabidopsis Target of Rapamycin (AtTOR) improves water-use efficiency and yield potential in rice.	Sci Rep	7	46124	2017		
44072	28351990	Yamauchi T., Yoshioka M., Fukazawa A., Mori H., Nishizawa N.K., Tsutsumi N., Yoshioka H., Nakazono M.	An NADPH oxidase RBOH Functions in Rice Roots during Lysigenous Aerenchyma Formation under Oxygen-Deficient Conditions.	Plant Cell	29(4)	775-790	2017	CDPK5,CDPK13,RBOHH	OsCDPK5, OsCPK5, CPK5,OsCDPK13, OsCPK13, OsCDPK7, CDPK7, OsCPK13-1, OsCPK13-2,rbohH, OsrbohH, Os rbohH, OsNox9, Nox9, OsRboh9, Rboh9, Os-RbohH, RbohH 
44073	28298520	Wang J., Yu H., Xiong G., Lu Z., Jiao Y., Meng X., Liu G., Chen X., Wang Y., Li J.	Tissue-Specific Ubiquitination by IPA1 INTERACTING PROTEIN1 Modulates IPA1 Protein Levels to Regulate Plant Architecture in Rice.	Plant Cell	29(4)	697-707	2017	FC1,WFP,VIP2,DEP1	fc1, OsTB1, tb1, OsTB1/FC1, Os TB1, TB1, OsFC1, MP3, OsMP3,OsSPL14, SPL14, IPA1, WFP/IPA1, OsSPL14/WFP/IPA1, OsIPA1,  IPA1/OsSPL14,IPI1, RIP1, OsVIP2, OsIPI1, OsRIP1,  OsRING103, RING103,OsDEP1, EP, qPE9-1, DN1, DEP1/DN1/qPE9-1, qNGR9, qDEP1, RGG4/DEP1/DN1/qPE9-1/OsGGC3, RGG4, OsDN1, OsGGC3, GGC3
44074	28298519	Xu L., Zhao H., Ruan W., Deng M., Wang F., Peng J., Luo J., Chen Z., Yi K.	ABNORMAL INFLORESCENCE MERISTEM1 Functions in Salicylic Acid Biosynthesis to Maintain Proper Reactive Oxygen Species Levels for root meristem Activity in Rice.	Plant Cell	29(3)	560-574	2017	AIM1,WRKY62,WRKY76	MFP, OsAIM, OsCHD, CHD,OsWRKY62, OsWRKY62.1, OsWRKY62.2, XB10, OsWRKY62-1, OsWRKY62-2,OsWRKY76, OsWRKY76.1, OsWRKY76.2, OsWRKY76.3
44075	28363779	Ma J.Q., Jian H.J., Yang B., Lu K., Zhang A.X., Liu P., Li J.N.	Genome-wide analysis and expression profiling of the GRF gene family in oilseed rape (Brassica napus L.).	Gene			2017		
44076	28254898	Wang G.L., Valent B.	Durable resistance to rice blast.	Science	355(6328)	906-907	2017	_,PIGM,_	PigmS,Pigm(t), Pi-gm(t), Pigm,PigmR
44077	28254780	Song S., Chen Y., Liu L., Wang Y., Bao S., Zhou X., Teo Z.W., Mao C., Gan Y., Yu H.	OsFTIP1-Mediated Regulation of Florigen Transport in Rice Is Negatively Regulated by the Ubiquitin-Like Domain Kinase OsUbDKgamma4.	Plant Cell	29(3)	491-507	2017	S5A,RAP1B,FTIP1,RFT1,RAP1A,_	OsS5a, S5a, OsRpn10, Rpn10, OsvWA9, vWA9,MADS14, OsMADS14, FDRMADS6, RMADS211, AGL10,OsFTIP1, OsC2DP55, C2DP55,FT-L 3, OsFTL3, FTL3, FT-L3, RFT, OsRFT1,OsMADS15, FDRMADS3, RMADS215, MADS15, DEP,OsUbDKgamma4, UbDKgamma4
44078	28366833	Kumari C., Dutta T.K., Chaudhary S., Banakar P., Papolu P.K., Rao U.	Molecular characterization of FMRFamide-like peptides in Meloidogyne graminicola and analysis of their knockdown effect on nematode infectivity.	Gene			2017		
44079	28349358	Yin X., Biswal A.K., Dionora J., Perdigon K.M., Balahadia C.P., Mazumdar S., Chater C., Lin H.C., Coe R.A., Kretzschmar T., Gray J.E., Quick P.W., Bandyopadhyay A.	CRISPR-Cas9 and CRISPR-Cpf1 mediated targeting of a stomatal developmental gene EPFL9 in rice.	Plant Cell Rep.	36(5)	745-757	2017	STOMAGEN	OsSTOMAGEN, OsEPFL9, EPFL9, OsEPFL10, EPFL10
44080	28248438	Sun J., Zheng T., Yu J., Wu T., Wang X., Chen G., Tian Y., Zhang H., Wang Y., Terzaghi W., Wang C., Wan J.	TSV, a putative plastidic oxidoreductase, protects rice chloroplasts from cold stress during development by interacting with plastidic thioredoxin Z.	New Phytol.			2017	TCD5,WP2,RPOB,RPOA,RCA,RBCL,PSAA	OsTCD5, TSV, OsTSV, CSV1, OsCSV1,TRXZ, OsPAP10, PAP10, OsPAP10/OsTRXz, OsTRXz, TRXz, OsTrx25, Trx25,rpoB, RpoB, Rpobeta,rope, rpoalpha, Rpoalpha, rope, RpoA ,OsRcaII, rca, rcaII, OsRcaI, RCAI, ME137, OsRCA1, RCA, RCAalpha, OsRCAalpha, OsRCAbeta,rbcL, rbcA, OsrbcL,PsaA, psaA, PsAA1, psaA1
44081	28285416	Zeng X., Tang R., Guo H., Ke S., Teng B., Hung Y.H., Xu Z., Xie X.M., Hsieh T.F., Zhang X.Q.	A naturally occurring conditional albino mutant in rice caused by defects in the plastid-localized OsABCI8 transporter.	Plant Mol. Biol.			2017	ABCI6,ARG1 ,TSC1	OsABCI6, OsABCI7, ABCI7,ABCI8, OsABCI8, OsABCI9, ABCI9, OsARG1 ,ABCI7, OsABCI7, OsABCI7_1, OsABCI7_2, OsABCI8, ABCI8, OsABCI8.1, OsABCI8.2, OsCNL1, CNL1, OsTSC1, TSC1.1, TSC1.2
44082	28357539	Hirano K., Masuda R., Takase W., Morinaka Y., Kawamura M., Takeuchi Y., Takagi H., Yaegashi H., Natsume S., Terauchi R., Kotake T., Matsushita Y., Sazuka T.	Screening of rice mutants with improved saccharification efficiency results in the identification of CONSTITUTIVE PHOTOMORPHOGENIC 1 and GOLD HULL AND INTERNODE 1.	Planta			2017	PPS,CHI3	OsWD40-55, OsCOP1, COP1, YEL, OsYEL, OsPPS, COP1-1, OsCOP1-1,  OsRING347, RING347,gh1, GH1, OsGH1, OsCHI, Cfi, CHI, OsCHI3
44083	28142196	Chen T., Wu H., Wu J., Fan X., Li X., Lin Y.	Absence of OsbetaCA1 causes a CO2 deficit and affects leaf photosynthesis and the stomatal response to CO2 in rice.	Plant J.	90(2)	344-357	2017	ALPHACA1,ALPHACA3,ALPHACA5,ALPHACA11,ALPHACA6,BETACA2,ALPHACA8,ALPHACA10,ALPHACA2,ALPHACA4,ALPHACA9,BETACA1,ALPHACA7	OsalphaCA1, alphaCA1,OsalphaCA3, alphaCA3,OsalphaCA5, alphaCA5,OsalphaCA11, alphaCA11,OsalphaCA6, alphaCA6,OsbetaCA2, betaCA2,OsalphaCA8, alphaCA8,OsalphaCA10, alphaCA10,OsalphaCA2, alphaCA2,OsalphaCA4, alphaCA4,OsalphaCA9, alphaCA9,OsCA, CA, OsbetaCA1, betaCA1, CA1,OsalphaCA7, alphaCA7
44084	28402719	Song X., Guo H., Zhang G., Wu Y., Wang G., Chen X., Fang R.	OsPRA2 fine-tunes rice brassinosteroid receptor.	Plant Signal Behav	12(3)	e1257455	2017	BZR1,D61,_,SG2	OsBZR1, Os BZR1, OsBES1-6, BES1-6,d61*, dwf42, d61, OsBRI1, OSBRI1, BRI1, Os BRI1, Osbri1, OsBRKq1, BRKq1,OsRab11F1, OsPRA2, PRA2, OsPra2 ,OsSERK1, SERK1, OsBAK1, BAK1, OsSERK1/OsBAK1, OsBISERK1, BISERK1, OsSerk1, OsBAK1-1, 08SG2/OsBAK1, 08SG2, OsSG2
44085	28321650	Xu Y.X., Xiao M.Z., Liu Y., Fu J.L., He Y., Jiang D.A.	The small auxin-up RNA OsSAUR45 affects auxin synthesis and transport in rice.	Plant Mol. Biol.			2017	PIN9,YUCCA6,PIN5B,PIN1A,PIN5C,PIN8,PIN10B,YUCCA4,SAUR45,PIN10A,YUCCA7,LRA1,PIN1C,YUCCA2,YUCCA3,PIN1B,YUCCA1	OsPIN9,OsYUCCA6, OsYUC6, YUC6,PIN5C, OsPIN5c, OsPIN5b, PIN4,PIN1C, OsPIN1C, OsPIN1c, OsPIN1a,PIN5B, OsPIN5b, OsPIN5c,OsPIN8,PIN3B, OsPIN3b, OsPIN10b,OsYUCCA4, OsYUC4, YUC4, YUCCA6, OsYUCCA6,OsSAUR45,PIN3A, OsPIN3a, OsPIN3t, OsPIN10a, OsPIN3,OsYUCCA7, OsYUC7, OsYUC5, YUC5, YUC7,OsPIN2, PIN2, OsLRA1, WAR1, OsWAR1,PIN1B, OsPIN1B, OsPIN1b, OsPIN1c,OsYUCCA2, OsYUC2, YUC2,OsYUCCA3, OsYUC3, YUC3,PIN1A, OsPIN1A, OsPIN1a, REH1, OsPIN1, OsPIN1b, REH1/OsPIN1,OsYUCCA1, OsYUC1, YUC1
44086	28369589	Zhou L., Han J., Chen Y., Wang Y., Liu Y.G.	Bivalent Formation 1, a plant-conserved gene, encodes an OmpH/coiled-coil motif-containing protein required for meiotic recombination in rice.	J. Exp. Bot.			2017	ZEP1,MRE11,DMC1A,COM1,P31COMET,RMC1	OsZEP1,OsMRE11, Mre11,OsDMC1A, OsDmc1A, Dmc1A, DMC1, OsDMC1, RiLIM15A, OsRad51,OsCOM1,P31comet, OsBVF1, BVF1 ,MER3, mer3, OsMER3, RCK, OsRCK, Os-MER3
44087	28347822	Ogawa S., Kawahara-Miki R., Miyamoto K., Yamane H., Nojiri H., Tsujii Y., Okada K.	OsMYC2 mediates numerous defence-related transcriptional changes via jasmonic acid signalling in rice.	Biochem. Biophys. Res. Commun.	486(3)	796-803	2017	GRY340,AOS3,CHI2,_,ACS4,_,PKS2,HDS,PKS12,TPS3,TIFY11B,BHLH10,ACS6,TIFY10C,OG1,AOC,TPS13,MCS,JAR1,AOS1,TPS20,_,_,LOX-L2,NOMT,TPS23,TIFY11E,TIFY5,TIFY11A,BHLH9,DXR,PLDalpha4	OsCMK, CMK, OsIspE, IspE, OsGRY340, AL4, OsAL4,OsAOS3, HPL2, OsHPL2, OsAOS3/OsHPL2,OsCHI2, OsCHI4,OsACS7, ACS7,OsACS4, OsOPCL1, OPCL1,OsTPS5, TPS5,CHS, OsPKS02, OsPKS2, PKS02, OsCHS2, CHS2,OsHDS, OsIspG, IspG,CHS, OsPKS12, OsCHS12, CHS12,OsTPS3, OsLIS, LIS, TPS22, OsTPS22,OsJAZ4, JAZ4, OsJAZ 10, OsJAZ10, JAZ10, OsTIFY11b,OsICE1, ICE1, OsbHLH010, bHLH010, OsMYL1, MYL1, bHLH116, OsMYC3, MYC3 ,OsACS6, 4ACS6, Os4ACS6,OsJAZ7, JAZ7, OsJAZ 8, OsJAZ8, Os-JAZ8, JAZ8, OsTIFY10c, OsTIFY10c/OsJAZ8,OsOPR7, OPR7, OsOPR13, OsOPR3, OsOPR5, OsOPR9, OsOPR08-1,  OPR13, OPR3, OPR5, OPR9, OPR08-1, OsOPR8, OPR8,OsAOC, AOC1, OsAOC1, HB, CPM2, OsAOC4, AOC4,TPS3, OsSTP3, OsTPS28, TPS28, OsTPS13, TPS35, OsTPS35, OsECBS, ECBS,OsMCS, IspF, OsIspF, OsMDS, MDS,OsJAR1, OsGH3.5, GH3.5, OsGH3-5, GH3-5,OsAOS, OsAOS1, CYP74A1, OsAOS2, AOS2,OsTPS20, TPS41, OsTPS41,OsACS5, ACS5, 4ACS5, Os4ACS5,OsTPS31, TPS31, OsSTPS, TPS46, tps46, OsTPS46, SSBis039, OsTPS10, TPS10, TPS7, OsTPS7,OsLOX-L2, LOX1.1, LOX L-2, LOX-2, OsLOX2, LOX2,OsNOMT, COMTL3, OsCOMTL3, OsCOMT29, COMT29,OsTPS23, TPS19, OsTPS19,OsJAZ 13, OsJAZ13,JAZ13, OsTIFY11e, OsJAZ13a, OsJAZ13b, OsJAZ13c, OsJAZ13d,OsJAZ 2, OsJAZ2, JAZ2, OsTIFY5, OsSTA188, OsJAZ5, JAZ5,OsJAZ3, JAZ3, OsJAZ 9, OsJAZ9, Os-JAZ9, JAZ9, OsTIFY11a, OsJAZ6, JAZ6,OsbHLH009, bHLH009, OsMYC2, MYC2,OsDXR, OsIspC, IspC,OsPLDalpha4, RPLD3, OsPLDeta2, OsC2DP50, C2DP50
44088	28250070	Zuo J., Wu Z., Li Y., Shen Z., Feng X., Zhang M., Ye H.	Mitochondrial ABC Transporter ATM3 Is Essential for Cytosolic Iron-Sulfur Cluster Assembly.	Plant Physiol.	173(4)	2096-2109	2017	ABCB23	OsABCB23, OsISC32, OsATM3, ATM3
44089	28263767	Henry S., Dievart A., Divol F., Pauluzzi G., Meynard D., Swarup R., Wu S., Gallagher K.L., Perin C.	SHR overexpression induces the formation of supernumerary cell layers with cortex cell identity in rice.	Dev. Biol.	425(1)	1-7	2017	SHR2	OsSHR2, OsGRAS-15, OsGRAS15, GRAS-15, GRAS15
44090	28059476	Wei X., Song X., Wei L., Tang S., Sun J., Hu P., Cao X.	An epiallele of rice AK1 affects photosynthetic capacity.	J Integr Plant Biol	59(3)	158-163	2017	AK4,DSM2,AK1,PORA	OsAK4,OsDSM2, OsBCH1, BCH1, OsHYD3, HYD3,OsAK1, OsAk2, Ak2,OsPorA, OsPORA
44091	28283922	Das N., Bhattacharya S., Bhattacharyya S., Maiti M.K.	Identification of alternatively spliced transcripts of rice phytochelatin synthase 2 gene OsPCS2 involved in mitigation of cadmium and arsenic stresses.	Plant Mol. Biol.			2017	PCS1,PCS5	OsPCS1, OsPCS2, PCS2, OsPCS15, PCS15,OsPCS, PCS, OsPCS2, PCS2, OsPCS2a, PCS2a, OsPCS2b, PCS2b, OsPCS1, PCS1, OsPCS1a, OsPCS1b, OsPCS1c, OsPCS1full, OsPCS5
44092	28342018	Lu G., Casaretto J.A., Ying S., Mahmood K., Liu F., Bi Y.M., Rothstein S.J.	Overexpression of OsGATA12 regulates chlorophyll content, delays plant senescence and improves rice yield under high density planting.	Plant Mol. Biol.			2017	YGL10,SUT1,SWEET3A,EAS1 ,SPS11,SUT2,HEMA,SPS1,RCCR1,NYC3,PORA,GATA12,_,CATB,NAC58,SGR	CAO, OsCAO, CAO1, OsCAO1, Oslls1, Lls1, DVR, PGL,OsSUT1, OsSUT2,OsSWEET3a, SWEET3a,OsPAO, PAO, OsACD1, ACD1, OsEAS1, RCD2, OsRCD2,sps11, OsSPS11, OsSPS5, SPS5,OsSUT2(t), SUT2M, OsSUT2, OsSUT2M, OsSUT5,HEMA1, OsHEMA, GluTR, OsHEMA1, hemA,sps1, OsSPS1, SPS,OsRCCR1, OsRCCR, RCCR,nyc3, OsNYC3, PPH,OsPorA, OsPORA,OsGATA12,OsAP10, AP10,CatB, CAT-B, OsCatB, OsCATB, OsCAT1B, CAT1B, CAT2, OsCAT2,OsNAP, NAP, ONAC058, ONAC58, Os PS1, PS1, OsCTb1, CTb1,sgr(t), sgr, OsSGR, OsSgr, SGR1, OsSGR1
44093	28118490	Lee K., Back K.	Overexpression of rice serotonin N-acetyltransferase 1 in transgenic rice plants confers resistance to cadmium and senescence and increases grain yield.	J. Pineal Res.	62(3)		2017	SNAT1	OsSNAT1, OsSNAT, SNAT, OsGNAT2, GNAT2
44094	28270131	Zhan Y., Sun X., Rong G., Hou C., Huang Y., Jiang D., Weng X.	Identification of two transcription factors activating the expression of OsXIP in rice defence response.	BMC Biotechnol.	17(1)	26	2017	_,BHLH59,ERF71	OsXIP, XIP,OsbHLH059, bHLH059, OsbHLH59, bHLH59, OsPRI3, PRI3,OsERF#071, OsERF071, OsERF71, AP2/EREBP#124, AP2/EREBP124, OsERF15
44095	28369864	Carotenuto G., Chabaud M., Miyata K., Capozzi M., Takeda N., Kaku H., Shibuya N., Nakagawa T., Barker D.G., Genre A.	The rice LysM receptor-like kinase OsCERK1 is required for the perception of short-chain chitin oligomers in arbuscular mycorrhizal signaling.	New Phytol.	214(4)	1440-1446	2017	CEBIP,CERK1,LYK4	CEBiP, Os-LYP1, LYP1, OsCEBiP,OsCERK1, OsLysM-RLK9, Os-CERK1, Os-LysM-RLK9, OsLysMRLK9, OsCERK1/OsLYK9, OsLYK9, LYK9,OsLysM-RLK1, LysM-RLK1, OsLYK4, OsNFR5/OsRLK2, OsNFR5, NFR5, OsRLK2, RLK2
44096	28337744	Joshi R., Sahoo K.K., Tripathi A.K., Kumar R., Gupta B.K., Pareek A., Singla-Pareek SL.	TKnockdown of an inflorescence meristem-specific cytokinin oxidase - OsCKX2 in rice reduces yield penalty under salinity stress condition.	Plant Cell Environ.			2017	GN1A	Gn1a, OsCKX2, CKX2, ckx2, Gn1a/OsCKX2, Os CKX2, CKX2/Gn1a
44097	28342864	Li C., Zhu S., Zhang H., Chen L., Cai M., Wang J., Chai J., Wu F., Cheng Z., Guo X., Zhang X., Wan J.	OsLBD37 and OsLBD38, two class II type LBD proteins, are involved in the regulation of heading date by controlling the expression of Ehd1 in rice.	Biochem. Biophys. Res. Commun.	486(3)	720-725	2017	RFT1,HD3A,EF1,LBD37,LBD38	FT-L 3, OsFTL3, FTL3, FT-L3, RFT, OsRFT1,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,OsLBD37, OsLBD3-8, LBD3-8,OsLBD38, HINGE2, OsHINGE2, LOB39, OsLOB39
44098	28267270	Cui P., Liu H., Ruan S., Ali B., Gill R.A., Ma H., Zheng Z., Zhou W.	A zinc finger protein, interacted with cyclophilin, affects root development via IAA pathway in rice.	J Integr Plant Biol			2017	IAA8,IAA23,_,LRT2,IAA20,IAA11,IAA31,IAA1	OsIAA8,OsIAA23,OsZFP, ZFP,CYC2, cyc2*, cyc2, OsCYP2, Cyp2, OsCYP19-2, CYP19-2, OsCYP-2, OsCyp2-P, OsCyp2, OsCYP19-1, LRT2/OsCYP2, lrt2*, lrt2, Ppcti ,OsIAA20,OsIAA11,OsIAA3, IAA3, OsIAA31, OsIAA30, IAA30,OsIAA1, OsIAA4
44099	28301324	Li R., Wang W., Li F., Wang Q., Wang S., Xu Y., Chen F.	Response of alternative splice isoforms of OsRad9 gene from Oryza sativa to environmental stress.	Z. Naturforsch., C, J. Biosci.			2017		
44100	28369540	Wang Y., Li D., Gao J., Li X., Zhang R., Jin X., Hu Z., Zheng B., Persson S., Chen P.	The 2'-O-methyladenosine nucleoside modification gene OsTrm13 positively regulates salt stress tolerance in rice.	J. Exp. Bot.			2017	ABI5,NHX1,_,PYL/RCAR3,ABA1,_,SOS1	OsABI5, OsbZIP10, OsABF1, OREB1, OsABI5-1, OsABI5-2, OsOREB1, OREB1 ,OsNHX1, OcNHX1, OgNHX1, OrNHX1, OpNHX1, ObNHX1,OsAAO3, AAO3 ,OsPYL/RCAR3, PYL3, OsPYL3, OsPYL10, PYL10, OsRCAR1, RCAR1 ,OsABA1, Zep1, OsAba1, Aba2, OsAba2, OsZep1, Zep, OsZep, Aba1, OsABA2, Osaba1, OsZEP-1, OsZEP, OSZEP1, ZEP1, ZEP,OsTRM13, OsTrm13, TRM13, Trm13 ,OsSOS1, OsNHA1, NHA1, SOS1/NHX7, NHX7, OsNHX7
44101	28371870	Yamada K., Yamaguchi K., Yoshimura S., Terauchi A., Kawasaki T.	Conservation of chitin-induced MAPK signaling pathways in rice and Arabidopsis.	Plant Cell Physiol.			2017	DSG1,CERK1,MAPKKK18,SMG1,MSRMK2,PR10A,MAPKKK11,RLCK185,JIOSPR10	OsMAPK6, MAPK6, OsMPK6, OsSIPK, SIPK, OsMAPK1, MAPK1, MPK1, OsMPK1, MPK6, OsDSG1,OsCERK1, OsLysM-RLK9, Os-CERK1, Os-LysM-RLK9, OsLysMRLK9, OsCERK1/OsLYK9, OsLYK9, LYK9,OsMAPKKK18,OsMKK4, MKK4, OsMKK4/SMG1, OsMAPKK4, MAPKK4, OsMEK4, MEK4, OsSMG1, SMG1/OsMEK6, OsMEK6, MEK6, OsSTS, STS,OsMSRMK2, OsMAPK5, OsMAP1, OsMPK3, OsBIMK1, OsMAPK2, MPK5, BIMK1, MAPK2, MAPK5, MPK3, OsMPK5, OsMAPK3, OsMAPK5b, MAPK3,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsMAPKKK11,OsRLCK185,JIOsPR10, OsPR10, PR10, OsJiPR10, JiPR10, OsPR10c, PR10c
44102	28272449	Han X., Jiang L., Che C., Wan C., Lu H., Xiao Y., Xu Y., Chen Z., Qin Z.	Design and Functional Characterization of a Novel Abscisic Acid Analog.	Sci Rep	7	43863	2017		
44103	28369656	God?nez-Palma SK., Rosas-Bringas FR., Rosas-Bringas OG., Garc?a-Ram?rez E., Zamora-Zaragoza J., V?zquez-Ramos JM.	Two maize Kip-related proteins differentially interact with, inhibit and are phosphorylated by cyclin D-cyclin-dependent kinase complexes.	J. Exp. Bot.			2017		
44104	28370092	Li F.Q., Li W., Lin Y.J., Pickett J.A., Birkett M.A., Wu K., Wang G., Zhou J.J.	Expression of Lima Bean Terpene Synthases in Rice Enhances Recruitment of a Beneficial Enemy of a Major Rice Pest.	Plant Cell Environ.			2017		
44105	28292258	Montesinos L., Bund? M., Badosa E., San Segundo B., Coca M., Montesinos E.	Production of BP178, a derivative of the synthetic antibacterial peptide BP100, in the rice seed endosperm.	BMC Plant Biol.	17(1)	63	2017		
44106	28370563	Wang J., Wang R., Wang Y., Zhang L., Zhang L., Xu Y., Yao S.	SHORT and Solid Culm/RFL/APO2 for culm development in rice.	Plant J.			2017	_,OSH10,EUI1,RFL,D35,OSH15,GA2OX3,OSH43,KO1,MADS2,BBX12,D18,SD1,BBX8,OSH45,OSH3,GO	OsCCT34, OsCMF10, CO9,OsH10, H10, HB412,eui1, GA16,17ox, CYP714D1, EUI, CYP714D1/EUI, OsEUI, LG5, OsLG5,RFL, OSL, FL, APO2, APO2/RFL, SSC, SSC/RFL/APO2, OsRFL, OsFL, OsAPO2, OsSSC,d35, d35(t), dwf30, OsKOL2, KOL2, KO2, OsKO2, OSKO2, KO, CYP701A, CYP701A6, Os KO2, OsKOL2/CYP701A,OSH15, OsH15, OSKN3, Oskn3, HOS3, D6, d6, OSH15/Oskn3, HB253, H15, OsKNOX3, KNOX3,OsGA2ox3, ga2ox 3, OsGA2ox-3, GA2ox3, GA2ox-3, GA2ox4,OsH43, H43,OsKO1, OSKO1, OSKOL1, OsKOS4, CYP701A7,OsMADS2, RMADS219, NMADS1, PI2, nmads1, DLN33, OsDLN33,OsBBX12, OsC, OsCCT16, CCT16,d18-h  (d18-I, d18h), dwf15, d25, d18, d18-k, d18-AD, d18-dy, OsGA3ox2, ga3ox2, OsGA3OX2, GA3OX2, OsGA3ox-2, GA3ox-2, GA3ox1,sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2, OsPHQ1, OsPHq1, PHq1,OsBBX8, OsK, OsCCT09, OsGhd2, OsK/Ghd2, CCT09, Ghd2,OSH42, OSH44, H45,OsH3, H3, HOS13,go, go1, pla3, PLA3, PLA3/GO, OsLBD3-7, LBD3-7
44107	28363873	Jung J.W., Huy N.X., Kim H.B., Kim N.S., Van Giap D., Yang M.S.	Production of recombinant human acid alpha-glucosidase with high-mannose glycans in gnt1 rice for the treatment of Pompe disease.	J. Biotechnol.	249	42-50	2017		
44108	28278368	Liu C., Du B., Hao F., Lei H., Wan Q., He G., Wang Y., Tang H.	Dynamic metabolic responses of brown planthoppers towards susceptible and resistant rice plants.	Plant Biotechnol. J.			2017		
44109	28273925	Hirano K., Kawamura M., Araki-Nakamura S., Fujimoto H., Ohmae-Shinohara K., Yamaguchi M., Fujii A., Sasaki H., Kasuga S., Sazuka T.	Sorghum dw1 positively regulates brassinosteroid signaling by inhibiting the nuclear localization of BRASSINOSTEROID INSENSITIVE 2.	Sci Rep	7(1)	126	2017	BIN2,_,_	GSK2, Os GSK2, OsGSK2, Os BIN2, OsBIN2, BIN2/GSK2, OsSK22/OsGSK7, OsSK22, OsGSK7, SK22, GSK7, OsSK22/GSK2 ,OsDW1-01g ,OsDW1-03g 
44110	28412605	Ito A., Yasuda A., Yamaoka K., Ueda M., Nakayama A., Takatsuto S., Honda I.	Brachytic 1 of barley (Hordeum vulgare L.) encodes the alpha subunit of heterotrimeric G protein.	J. Plant Physiol.	213	209-215	2017		
44111	28087663	Van Holle S., Roug? P., Van Damme EJM.	Evolution and structural diversification of Nictaba-like lectin genes in food crops with a focus on soybean (Glycine max).	Ann. Bot.	119(5)	901-914	2017		
44112	28369596	Bashir K., Nozoye T., Nagasaka S., Rasheed S., Miyauchi N., Seki M., Nakanishi H., Nishizawa N.K.	Paralogs and mutants show that one DMA synthase functions in Fe homeostasis in rice.	J. Exp. Bot.			2017		
44113	28349304	Shen L., Hua Y., Fu Y., Li J., Liu Q., Jiao X., Xin G., Wang J., Wang X., Yan C., Wang K.	Rapid generation of genetic diversity by multiplex CRISPR/Cas9 genome editing in rice.	Sci China Life Sci			2017		
44114	28370170	Kikuchi S., Bheemanahalli R., Jagadish K.S., Kumagai E., Masuya Y., Kuroda E., Raghavan C., Dingkuhn M., Abe A., Shimono H.	Genome-Wide Association Mapping for Phenotypic Plasticity in Rice.	Plant Cell Environ.			2017		
44115	28299373	Qiu X., Chen K., Lv W., Ou X., Zhu Y., Xing D., Yang L., Fan F., Yang J., Xu J., Zheng T., Li Z.	Examining two sets of introgression lines reveals background-independent and stably expressed QTL that improve grain appearance quality in rice (Oryza sativa L.).	Theor. Appl. Genet.	130(5)	951-967	2017		
44116	28288591	Rytter M.J., Namusoke H., Ritz C., Michaelsen K.F., Briend A., Friis H., Jeppesen D.	Correlates of thymus size and changes during treatment of children with severe acute malnutrition: a cohort study.	BMC Pediatr	17(1)	70	2017		
44117	28275855	Sunitha M., Srinath T., Reddy V.D., Rao K.V.	Expression of cold and drought regulatory protein (CcCDR) of pigeonpea imparts enhanced tolerance to major abiotic stresses in transgenic rice plants.	Planta			2017		
44118	28264650	H?nniger S., Dumas P., Sch?fl G., Gebauer-Jung S., Vogel H., Unbehend M., Heckel D.G., Groot A.T.	Genetic basis of allochronic differentiation in the fall armyworm.	BMC Evol. Biol.	17(1)	68	2017		
44119	28293806	Bandyopadhyay T., Mehra P., Hairat S., Giri J.	Morpho-physiological and transcriptome profiling reveal novel zinc deficiency-responsive genes in rice.	Funct. Integr. Genomics			2017		
44120	28346401	Shimatani Z., Kashojiya S., Takayama M., Terada R., Arazoe T., Ishii H., Teramura H., Yamamoto T., Komatsu H., Miura K., Ezura H., Nishida K., Ariizumi T., Kondo A.	Targeted base editing in rice and tomato using a CRISPR-Cas9 cytidine deaminase fusion.	Nat. Biotechnol.	35(5)	441-443	2017		
44121	28167027	Rao G.S., Tyagi A.K., Rao K.V.	Development of an inducible male-sterility system in rice through pollen-specific expression of l-ornithinase (argE) gene of E. coli.	Plant Sci.	256	139-147	2017		
44122	28285407	Davidi L., Pick U.	Novel 9-cis/all-trans beta-carotene isomerases from plastidic oil bodies in Dunaliella bardawil catalyze the conversion of all-trans to 9-cis beta-carotene.	Plant Cell Rep.			2017		
44123	28335375	Zhou K., Deng X., Yao X., Tian Y., Cao W., Zhu Y., Ustin S.L., Cheng T.	Assessing the Spectral Properties of Sunlit and Shaded Components in Rice Canopies with Near-Ground Imaging Spectroscopy Data.	Sensors (Basel)	17(3)		2017		
44124	28334204	Petitot A.S., Kyndt T., Haidar R., Dereeper A., Collin M., de Almeida Engler J., Gheysen G., Fernandez D.	Transcriptomic and histological responses of African rice (Oryza glaberrima) to Meloidogyne graminicola provide new insights into root-knot nematode resistance in monocots.	Ann. Bot.	119(5)	885-899	2017		
44125	28270549	VanHook AM.	Papers of note in Science355 (6328).	Sci Signal	10(469)		2017		
44126	28369958	Yamaki T., Otani M., Ono K., Mimura T., Oda K., Minamii T., Matsumoto S., Matsuo Y., Kawamukai M., Akihiro T.	Isolation and characterization of rice cesium transporter genes from a rice-transporter-enriched yeast expression library.	Physiol Plant			2017	FCO11,_,_,PDR1,HAK17,AAP11F,AMT1;1,HAK5,FCO10,FCO9,_,NRAMP4	OsFCO11, OsVPE1, VPE1,FCO2,FCO6,OsABCG45, OsPDR1, FCO1, OsPDR1.2, OsPDR1.3, OsPDR1.1,OsHAK17, FCO3, FCO4,OsAAP11F, OsAAP7, AAP7, FCO7,OsAMT1;1, OsAMT1:1, OsAMT1, AMT1-1, AMT1, OsAMT1p, OsAMT1-1, Osamt1-1, "OsAMT1,1", OsAMT1.1, AMT1.1, FCO12,OsHAK5, FCO13, OsFCO13,OsFCO10, OsSTP13, STP13,OsFCO9, OsDUF6, DUF6,OsANT4, ANT4, FCO8,OsNRAMP4, Nrat1, Nramp6, OsNRAT1, NRAT1, FCO5
44127	28303353	Ju S., Wang L., Yin N., Li D., Wang Y., Zhang C.	Silicon alleviates simulated acid rain stress of Oryza sativa L. seedlings by adjusting physiology activity and mineral nutrients.	Protoplasma			2017		
44128	28151037	Zhang K., Xu W., Wang C., Yi X., Su Z.	Differential deposition of H2A.Z in rice seedling tissue during the day-night cycle.	Plant Signal Behav	12(3)	e1286438	2017	TOC1,ELF3.2,PRR73,_	OsTOC1, OsPRR1, Os-PRR1, PRR1, OsRRA21, OsCCT07,ELF3_chr.1, OsELF3.2, ELF3.2, OsELF3-2, ELF3-2, OsELF3b, ELF3b,OsPRR73, Os-PRR73, Prr3, OsPRR3, OsRRA20, OsCCT11, CCT11,HTA705
44129	28108552	Xu S.	Predicted Residual Error Sum of Squares of Mixed Models: An Application for Genomic Prediction.	G3 (Bethesda)	7(3)	895-909	2017		
44130	28391850	Preety, Hooda V.	Increasing the efficiency of immobilization and chitin determination using copper oxide nanoparticles.	Talanta	168	246-256	2017		
44131	28369468	Nanda A.K., Pujol V., Wissuwa M.	Patterns of stress response and tolerance based on transcriptome profiling of rice crown tissue under zinc deficiency.	J. Exp. Bot.			2017		
44132	28366824	Duan P., Xu J., Zeng D., Zhang B., Geng M., Zhang G., Huang K., Huang L., Xu R., Ge S., Qian Q., Li Y.	Natural Variation in the Promoter of GSE5 Contributes to grain size Diversity in Rice.	Mol Plant	10(5)	685-694	2017	GW5	qSW5/GW5, GSE5, OsGSE5, OsGW5, qSW5
44133	28167026	Kim T.H., Hur Y.J., Han S.I., Cho J.H., Kim K.M., Lee J.H., Song Y.C., Kwon Y.U., Shin D.	Drought-tolerant QTL qVDT11 leads to stable tiller formation under drought stress conditions in rice.	Plant Sci.	256	131-138	2017		
44134	28337762	Li S., Ying Y., Secco D., Wang C., Narsai R., Whelan J., Shou H.	Molecular interaction between PHO2 and GI in rice.	Plant Cell Environ.			2017		
44135	28274717	Qiu L., Fan J., Zhang B., Liu L., Wang X., Lei C., Lin Y., Ma W.	RNA interference knockdown of aminopeptidase N genes decrease the susceptibility of Chilo suppressalis larvae to Cry1Ab/Cry1Ac and Cry1Ca-expressing transgenic rice.	J. Invertebr. Pathol.	145	9-12	2017		
44136	28299429	Liu Y., Xu Y., Ling S., Liu S., Yao J.	Anther-preferential expressing gene PMR is essential for the mitosis of pollen development in rice.	Plant Cell Rep.			2017	PMR	OsPMR,  OsRING154, RING154
44137	28317902	Zhang L., Yu H., Ma B., Liu G., Wang J., Wang J., Gao R., Li J., Liu J., Xu J., Zhang Y., Li Q., Huang X., Xu J., Li J., Qian Q., Han B., He Z., Li J.	A natural tandem array alleviates epigenetic repression of ipa1 and leads to superior yielding rice.	Nat Commun	8	14789	2017		
44138	28290557	Jang S., Li H.Y., Kuo M.L.	Ectopic expression of Arabidopsis FD and FD PARALOGUE in rice results in dwarfism with size reduction of spikelets.	Sci Rep	7	44477	2017		
44139	28415033	Zhang C., Li X., He Y., Zhang J., Yan T., Liu X.	Physiological investigation of C4-phosphoenolpyruvate-carboxylase-introduced rice line shows that sucrose metabolism is involved in the improved drought tolerance.	Plant Physiol. Biochem.	115	328-342	2017		
44140	28332574	Zhang Z., Li J., Pan Y., Li J., Zhou L., Shi H., Zeng Y., Guo H., Yang S., Zheng W., Yu J., Sun X., Li G., Ding Y., Ma L., Shen S., Dai L., Zhang H., Yang S., Guo Y., Li Z.	Natural variation in CTB4a enhances rice adaptation to cold habitats.	Nat Commun	8	14788	2017	CTB4A,_,RHA6	OsRLCK127, RLCK127, OsCTB4a, qCTB4-1,RMtATPb, atpB, AtpB ,AtpB, OsRHA6
44141	28295376	Yuan J., Chen S., Jiao W., Wang L., Wang L., Ye W., Lu J., Hong D., You S., Cheng Z., Yang D.L., Chen Z.J.	Both maternally and paternally imprinted genes regulate seed development in rice.	New Phytol.			2017	_,_,_,_,MEG2,_	OsFbox530, Fbox530, Os_F0198, OsFBX365, FBX365, PEG2,  OsFBX365, FBX365,PEG1, OsPEG1,Os_F0794, OsFBDUF48, FBDUF48, PEG3,  OsFBDUF48, FBDUF48,OsEnS-86, EnS-86, MEG3,OsMEG2,MEG2, OsMEG2
44142	28351912	Yoon J., Cho L.H., Antt H.W., Koh H.J., An G.	KNOX Protein OSH15 Induces Grain Shattering by Repressing Lignin Biosynthesis Genes.	Plant Physiol.	174(1)	312-325	2017		
44143	28260228	Ren B., Yan F., Kuang Y., Li N., Zhang D., Lin H., Zhou H.	A CRISPR/Cas9 toolkit for efficient targeted base editing to induce genetic variations in rice.	Sci China Life Sci			2017		
44144	28347275	Zhou P., Silverstein K.A., Ramaraj T., Guhlin J., Denny R., Liu J., Farmer A.D., Steele K.P., Stupar R.M., Miller J.R., Tiffin P., Mudge J., Young N.D.	Exploring structural variation and gene family architecture with De Novo assemblies of 15 Medicago genomes.	BMC Genomics	18(1)	261	2017		
44145	28319055	Zeng D., Tian Z., Rao Y., Dong G., Yang Y., Huang L., Leng Y., Xu J., Sun C., Zhang G., Hu J., Zhu L., Gao Z., Hu X., Guo L., Xiong G., Wang Y., Li J., Qian Q.	Rational design of high-yield and superior-quality rice.	Nat Plants	3	17031	2017		
44146	28257051	Yang Y., Gao T., Xu M., Dong J., Li H., Wang P., Li G., Guo T., Kang G., Wang Y.	Functional Analysis of a Wheat AGPase Plastidial Small Subunit with a Truncated Transit Peptide.	Molecules	22(3)		2017		
44147	28464063	Tulpan D., Leger S.	The Plant Orthology Browser: An Orthology and Gene-Order Visualizer for Plant Comparative Genomics.	Plant Genome	10(1)		2017		
44148	28256530	Shen J., Liu J., Xie K., Xing F., Xiong F., Xiao J., Li X., Xiong L.	Translational repression by a miniature inverted-repeat transposable element in the 3' untranslated region.	Nat Commun	8	14651	2017		
44149	28483054	Kashyap P., Deswal R.	A novel class I Chitinase from Hippophae rhamnoides: Indications for participating in ICE-CBF cold stress signaling pathway.	Plant Sci.	259	62-70	2017		
44150	28167036	Mei J., Li F., Liu X., Hu G., Fu Y., Liu W.	Newly identified CSP41b gene localized in chloroplasts affects leaf color in rice.	Plant Sci.	256	39-45	2017	YGL6 	CSP41b, LGL1
44151	28331197	Miki D., Zhu P., Zhang W., Mao Y., Feng Z., Huang H., Zhang H., Li Y., Liu R., Zhang H., Qi Y., Zhu J.K.	Efficient Generation of diRNAs Requires Components in the Posttranscriptional Gene Silencing Pathway.	Sci Rep	7(1)	301	2017		
44152	28315752	Wang M., Mao Y., Lu Y., Tao X., Zhu J.K.	Multiplex Gene Editing in Rice Using the CRISPR-Cpf1 System.	Mol Plant			2017		
44153	28264034	Wang H., Niu L., Fu C., Meng Y., Sang D., Yin P., Wu J., Tang Y., Lu T., Wang Z.Y., Tadege M., Lin H.	Overexpression of the WOX gene STENOFOLIA improves biomass yield and sugar release in transgenic grasses and display altered cytokinin homeostasis.	PLoS Genet.	13(3)	e1006649	2017		
44154	28315751	Wang M., Lu Y., Botella J.R., Mao Y., Hua K., Zhu J.K.	Gene Targeting by Homology-Directed Repair in?Rice Using a Geminivirus-Based CRISPR/Cas9 System.	Mol Plant			2017		
44155	28278353	Li Y., Zhang Q., Liu Q., Meissle M., Yang Y., Wang Y., Hua H., Chen X., Peng Y., Romeis J.	Bt rice in China - focusing the nontarget risk assessment.	Plant Biotechnol. J.			2017		
44156	28262736	Qiu L., Fan J., Liu L., Zhang B., Wang X., Lei C., Lin Y., Ma W.	Knockdown of the MAPK p38 pathway increases the susceptibility of Chilo suppressalis larvae to Bacillus thuringiensis Cry1Ca toxin.	Sci Rep	7	43964	2017		
44157	28483051	Bi Z., Zhang Y., Wu W., Zhan X., Yu N., Xu T., Liu Q., Li Z., Shen X., Chen D., Cheng S., Cao L.	es7, encoding a ferredoxin-dependent Glutamate synthase, functions in nitrogen metabolism and impacts leaf senescence in rice.	Plant Sci.	259	24-34	2017		
44158	28262713	Ranjan R., Khurana R., Malik N., Badoni S., Parida S.K., Kapoor S., Tyagi A.K.	bHLH142 regulates various metabolic pathway-related genes to affect pollen development and anther dehiscence in rice.	Sci Rep	7	43397	2017		
44159	28447047	Roodgar-Nashta M., Shahpiri A.	Replacement of threonine-55 with glycine decreases the reduction rate of OsTrx20 by glutathione.	Mol Biol Res Commun	6(1)	33-40	2017		
44160	28260782	Zhang B., Zhang L., Li F., Zhang D., Liu X., Wang H., Xu Z., Chu C., Zhou Y.	Control of secondary cell wall patterning involves xylan deacetylation by a GDSL esterase.	Nat Plants	3	17017	2017		
44161	28349175	Zhang N., Fan X., Cui F., Zhao C., Zhang W., Zhao X., Yang L., Pan R., Chen M., Han J., Ji J., Liu D., Zhao Z., Tong Y., Zhang A., Wang T., Li J.	Characterization of the temporal and spatial expression of wheat (Triticum aestivum L.) plant height at the QTL level and their influence on yield-related traits.	Theor. Appl. Genet.			2017		
44162	28343064	Zeng X., Zeng Z., Liu C., Yuan W., Hou N., Bian H., Zhu M., Han N.	A barley homolog of yeast ATG6 is involved in multiple abiotic stress responses and stress resistance regulation.	Plant Physiol. Biochem.	115	97-106	2017		
44163	28368284	Welner D.H., Tsai A.Y., DeGiovanni A.M., Scheller H.V., Adams P.D.	X-ray diffraction analysis and in vitro characterization of the UAM2 protein from Oryza sativa.	Acta Crystallogr F Struct Biol Commun	73(Pt 4)	241-245	2017		
44164	28292004	Wu Y., Yang W., Wei J., Yoon H., An G.	Transcription Factor OsDOF18 Controls Ammonium Uptake by Inducing Ammonium Transporters in Rice Roots.	Mol. Cells	40(3)	178-185	2017		
44165	28260830	Bheemanahalli R., Sathishraj R., Manoharan M., Sumanth H.N., Muthurajan R., Ishimaru T., Krishna J.S.	Is early morning flowering an effective trait to minimize heat stress damage during flowering in rice?	Field Crops Res.	203	238-242	2017		
44166	28254681	Giuliano G.	Provitamin A biofortification of crop plants: a gold rush with many miners.	Curr. Opin. Biotechnol.	44	169-180	2017		
44167	28300754	Tran L.H., Jung S.	Effects of Light-Emitting Diode Irradiation on Growth Characteristics and Regulation of Porphyrin Biosynthesis in Rice Seedlings.	Int J Mol Sci	18(3)		2017	_,YLC2,SPRL1,CAB1R,CP24,YGL98,HEMA,RBCS3	ALAD, HEMB, OsALAD, OsHEMB, hemB,OsHO2, HO2, OsHO-2, HO-2,OsPPX, PPX, PPO1, OsPPO1, OsSPRL1, LMM8, OsLMM8,cab1R, LHCP, CAB, OsLhcb1, Lhcb1, Cab1, OsCAB1, Lhcb1b, OsLhcb1b, CAB2R,Lhcb6, OsCP24, OsLhcb6,OsChlD, ChlD, CHLD, OsCHLD, Ygl7, YGL3, OsvWA12, vWA12,HEMA1, OsHEMA, GluTR, OsHEMA1, hemA,RbcS3, OsRBCS3, OsRbcS3, rbcS 
44168	28101936	Zhang H.Y., Lei G., Zhou H.W., He C., Liao J.L., Huang Y.J.	Quantitative iTRAQ-based proteomic analysis of rice grains to assess high night temperature stress.	Proteomics	17(5)		2017		
44169	28283703	Zhou Y., Xie Y., Cai J., Liu C., Zhu H., Jiang R., Zhong Y., Zhang G., Tan B., Liu G., Fu X., Liu Z., Wang S., Zhang G., Zeng R.	Substitution mapping of QTLs controlling seed dormancy using single segment substitution lines derived from multiple cultivated rice donors in seven cropping seasons.	Theor. Appl. Genet.			2017		
44170	28115496	Lin C.W., Huang L.Y., Huang C.L., Wang Y.C., Lai P.H., Wang H.V., Chang W.C., Chiang T.Y., Huang H.J.	Common Stress Transcriptome Analysis Reveals Functional and Genomic Architecture Differences Between Early and Delayed Response Genes.	Plant Cell Physiol.	58(3)	546-559	2017	ACS1,MSRMK2,ACS2,PP2C1,_,GA2OX9,NH1	ACC1*, OsACS1, Os-ACS1, ACC1, OsACC1,OsMSRMK2, OsMAPK5, OsMAP1, OsMPK3, OsBIMK1, OsMAPK2, MPK5, BIMK1, MAPK2, MAPK5, MPK3, OsMPK5, OsMAPK3, OsMAPK5b, MAPK3,OsACS2, Os-ACS2,OsPP2C1, OsSIPP2C1, SIPP2C1, OsPP2C68, PP2C68, OsPP108,LRR-RLK,OsGA2ox9, GA2ox7, 2-ODD35, Os2-ODD35, 2ODD35, Os2ODD35,OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2, DLN5, OsDLN5,  OsBTBA1, BTBA1
44171	28154240	Deng Y., Zhai K., Xie Z., Yang D., Zhu X., Liu J., Wang X., Qin P., Yang Y., Zhang G., Li Q., Zhang J., Wu S., Milazzo J., Mao B., Wang E., Xie H., Tharreau D., He Z.	Epigenetic regulation of antagonistic receptors confers rice blast resistance with yield balance.	Science	355(6328)	962-965	2017	_,_,PIGM,AGO4A	PigmR,PigmS,Pigm(t), Pi-gm(t), Pigm,OsAGO4a, AGO4-2
44172	28146469	Yamaji N., Takemoto Y., Miyaji T., Mitani-Ueno N., Yoshida K.T., Ma J.F.	Erratum: Reducing phosphorus accumulation in rice grains with an impaired transporter in the node.	Nature	543(7643)	136	2017		
44173	28230139		Daring deep-sea explorers, armyworm offensive and GM-rice theft.	Nature	542(7642)	396-397	2017		
44174	28179101	Saha J., Giri K.	Molecular phylogenomic study and the role of exogenous spermidine in the metabolic adjustment of endogenous polyamine in two rice cultivars under salt stress.	Gene	609	88-103	2017	DAO2,ADC3,SAMDC3,PAO1,DAO4,DAO1 ,DAO5,PAOA,PAO5,CPA2,SAMDC2,AIH,CPA3,_,SAMDC6,DAO3,ADC2,CPA1,CPA4,ODCA,SPMS2,SPDS1,ACL5,SAMDC,ADC1,ODC2,PAO4,ODCB,PAO3,PAO7,NGLF,ODC4,PAOB,SAMDC5,SPDS2	OsDAO2, OsCuDAO2, CuDAO2,OsADC3, OsADC1, ADC1,OsSAMDC3,OsPAO1, OsAO4, AO4,OsDAO4, OsCuDAO4, CuDAO4,OsDAO1, OsCuDAO1, CuDAO1,OsDAO5, OsCuDAO5, CuDAO5,PAOa, OsPAO2, PAO2, OsPAOa,OsPAO5, OsAO2, AO2,OsCPA2,SamDC2, AdoMetDC2, OsSAMDC2,OsAIH,OsCPA3,SAMDC1, SAMDC, OsSAMDC4,OsSAMDC6,OsDAO3, OsCuDAO3, CuDAO3,ADCa, OsAdc2, OsADC2,OsCPA1,OsCPA4,ODCa, OsODC1, ODC1 ,OsSPMS2, OsSPDS3, SPDS3,OsSPDS1, OsSPDS, SPDS,OsACL5,SamDC, AdoMetDC, AdoMetDC1, OsSAMDC1,OsADC1, ARGDC, ADC, OsAdc1,OsODC2,OsPAO4, OsAO1, AO1,ODCb, OsODC3, ODC3, OsODC1, ODC1,OsPAO3, OsAO3, AO3,OsPAO7, OsPAO3, PAO3,OsARG, ARG, Nglf, Nglf-1, OsAGM, AGM,OsODC4,PAOb, OsPAOb, OsPAO6, OsPAO2, PAO6, PAO2,OsSAMDC5,OsSPDS2, OsSPMS1, SPMS1
44175	28182328	Kang J., Li J., Gao S., Tian C., Zha X.	Overexpression of the leucine-rich receptor-like kinase gene LRK2 increases drought tolerance and tiller number in rice.	Plant Biotechnol. J.			2017	LRK2,RFA4,XA21,SG2,PIP2;3,_,_	OsLRK2, OsPSKR8, PSKR8,rfa4*, REFA4, refa4, eEF-1a, OsEF-1a, OsEF1A, EF1A, eIF-1-alpha,Xa21*, Xa21, OsXA21,OsSERK1, SERK1, OsBAK1, BAK1, OsSERK1/OsBAK1, OsBISERK1, BISERK1, OsSerk1, OsBAK1-1, 08SG2/OsBAK1, 08SG2, OsSG2,OsPIP2;3, PIP2-3, OsPIP2-2,OsCLVATA, CLVATA,OsBRI1
44176	28181537	Borah P., Sharma E., Kaur A., Chandel G., Mohapatra T., Kapoor S., Khurana J.P.	Analysis of drought-responsive signalling network in two contrasting rice cultivars using transcriptome-based approach.	Sci Rep	7	42131	2017	_,_,WRKY1,_,_,_,VP1,FBOX33,ALDC1,DIR11,SAUR57,DREB1A,ERD1	CYP72A1, OsCYP72A1,MYB,OsWRKY1, OsWRKY1v2,OsEnS-64, PCC13-62, OsPCC13-62,LEA D-34,ONAC007, ONAC7, OsSND1, SND1, OsSWN1, SWN1, DLN157, OsDLN157,Vp1* (OSVP1), OsVP1, OsVp1, Vp1, ABI3, OsABI3, OsLFL4, OsVp-1, OSVP1,OsFbox033, OsFbox33, Fbox33, Os_F0114, OsFBK1, FBK1 ,  OsFBK1, FBK1,AldC-1,OsDIR11, OsjDIR11,OsSAUR57,OsDREB1A, Os DREB1A, CBF3, OsCBF3, OsDREB1A/OsCBF3, ERF24, OsERF24, OsERF024, OsERF#024, AP2/EREBP#114, AP2/EREBP114, OsDREBL,CLPD1, ClpD1, OsERD1, OSClpD, osClpD, OsClpD1, OsClpD1.1, OsClpD1.2, OsClpD1.3, OsClpD1.4 
44177	28220451	Li Z., Ao Y., Feng D., Liu J., Wang J., Wang H.B., Liu B.	OsRLCK 57, OsRLCK107 and OsRLCK118 Positively Regulate Chitin- and PGN-Induced Immunity in Rice.	Rice (N Y)	10(1)	6	2017	JIOSPR10,RLCK107,RLCK57,PR10A,_,PAL1,CERK1,RLCK118	JIOsPR10, OsPR10, PR10, OsJiPR10, JiPR10, OsPR10c, PR10c,OsRLCK107,OsRLCK57,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsPR5, PR5,OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6,OsCERK1, OsLysM-RLK9, Os-CERK1, Os-LysM-RLK9, OsLysMRLK9, OsCERK1/OsLYK9, OsLYK9, LYK9,OsRLCK118
44178	28220688	Zhong X., Yang J., Shi Y., Wang X., Wang G.L.	The DnaJ protein OsDjA6 negatively regulates rice innate immunity to the blast fungus Magnaporthe oryzae.	Mol. Plant Pathol.			2017	WRKY45,DJA6,RFA1,CK1A.3,NH1,C3H40,ZFP1 ,_,HAM1,PR1A,DXS2,_,IVD,SCP45,_,RUBI3,DJA5,PR5,_	OsWRKY45, OsWRKY45-1, OsWRKY45-2, WRKY45-1, WRKY45-2,OsDjA6, DjA6,rfa1*, REFA1, refa1, OseEF-1A, eEF-1A, Osef1a1,OsCK1a.3, UCIP10, OsUCIP10, OsCKq1, CKq1,OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2, DLN5, OsDLN5,  OsBTBA1, BTBA1,OsC3H40, UCIP14, OsUCIP14,OsRFP, OsZFP1, UCIP2, OsUCIP2,  OsRING145, RING145,,OsSCL1, SCL1, OsHAM1, OsGRAS-9, OsGRAS-9, GRAS-9, GRAS9, OsGRAS8, GRAS8, SCL6-II, OsSCL6-II,OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1, OsPR1b, PR1alpha, OsPR1alpha,OsDXS2, dxs2,,OsIVD, IVDH, OsIVDH,OsSCP45, OsSCP46, SCP46,,rubi3, UBQ3,OsDjA5,OsPR5, Pir2, PR-5, PR5-1,OsPP112, PP112, OsPP2Ac-4, PP2Ac-4 
44179	28234896	Deng L., Li L., Zhang S., Shen J., Li S., Hu S., Peng Q., Xiao J., Wu C.	Suppressor of RID1 (SID1) shares common targets with RID1 on florigen genes to initiate floral transition in rice.	PLoS Genet.	13(2)	e1006642	2017	RFT1,IDD6,HD3A,EF1,EHD2/RID1,IDD1,IDD4	FT-L 3, OsFTL3, FTL3, FT-L3, RFT, OsRFT1,OsIDD6,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,Ehd2, RID1, OsID1, ID1, OsId1, OsID, Ehd2/RID1/OsId1, RID1/OsID1/Ehd2,OsIDD1,OsIDD4, SID1
44180	28226420	Chen J., Fan X., Qian K., Zhang Y., Song M., Liu Y., Xu G., Fan X.	pOsNAR2.1:OsNAR2.1 expression enhances nitrogen uptake efficiency and grain yield in transgenic rice plants.	Plant Biotechnol. J.			2017	NAR2.1,NRT2.1,NRT2.2,HTNE	OsNAR2.1, OsNRT3.1A,OsNRT2.1, OsNRT2.2,OsNRT2.2, OsNRT2.1,NRT2.3, OsNRT2.3, OsNRT2;1, OsNRT2.3a, OsNRT2.3b, OsNRT2;3a, OsNRT2.5 
44181	28157263	Li L., Wang F., Yan P., Jing W., Zhang C., Kudla J., Zhang W.	A phosphoinositide-specific phospholipase C pathway elicits stress-induced Ca(2+) signals and confers salt tolerance to rice.	New Phytol.	214(3)	1172-1187	2017	RAB16D,PLC4,PIPLC1,NHX1,BZIP23,LEA3-1,PLC3,PLC2,CDPK13,CML31	rab21, OsLEA26, Rab16D, OsRab16,OsPLC4, OsC2DP41, C2DP41,OsPI-PLC1, PI-PLC1, OsPLC1, PLC1, OsC2DP69, C2DP69,OsNHX1, OcNHX1, OgNHX1, OrNHX1, OpNHX1, ObNHX1,OsbZIP23, OsAREB1, OsABF2, Osbzip23, OsAREB2, OsZIP23, ZIP23,OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3, OsLEA3A, LEA3A,OsPLC3, OsC2DP82, C2DP82,OsPLC2, OsC2DP30, C2DP30,OsCDPK13, OsCPK13, OsCDPK7, CDPK7, OsCPK13-1, OsCPK13-2,OsCML31, OsMSR2, MSR2
44182	28244201	Jung H., Chung P.J., Park S.H., Redillas M.C., Kim Y.S., Suh J.W., Kim J.K.	Overexpression of OsERF48 causes regulation of OsCML16, a calmodulin-like protein gene that enhances root growth and drought tolerance.	Plant Biotechnol. J.			2017	CML16,WSI76,AGP3,CCD1,DHN1,GOLS1,DREB1C,ERF48,RS5,XTH9	OsCML16,wsi76, OsLEA24/OsGolS2, OsGolS2/OsLEA24, OsLEA24, OsGolS2, GolS2, LEA24, OsGolS1, GolS1, OsGOLS2, GOLS2,OsAGP3,OsCCD1,LIP9, OsLIP9, lip9, DHN1, DIP1, OsDip1, OsLEA23, OsDhn1, COR410, OsLEA23/DIP1, DIP1/OsLEA23,OsGolS1, GolS1, OsGolS2, GolS2,OsDREB1C, CBF1, ERF26, OsERF026, OsERF#026, OsERF26, AP2/EREBP#098, AP2/EREBP98, OsCBF2, CBF2,OsERF#048, OsERF048, OsERF48, AP2/EREBP#170, AP2/EREBP170, OsDRAP1, DRAP1, OsERF48/OsDRAP1,OsRS5, OsRS1, RS1,OsXTH9, OsXET9, XTH1, OsXTH1
44183	28173633	Zhao J., Zhang S., Dong J., Yang T., Mao X., Liu Q., Wang X., Liu B.	A novel functional gene associated with cold tolerance at the seedling stage in rice.	Plant Biotechnol. J.			2017	BIP120	OsBIP120, qCTS-9, TAF2, OsTAF2
44184	28230163	Bakshi A., Moin M., Kumar M.U., Reddy A.B., Ren M., Datla R., Siddiq E.A., Kirti P.B.	Ectopic expression of Arabidopsis Target of Rapamycin (AtTOR) improves water-use efficiency and yield potential in rice.	Sci Rep	7	42835	2017	TOR,_	OsTOR,OsWD40-81, OsLST8, LST8,  OsDWD26, DWD26
44185	28223030	Ansarypour Z., Shahpiri A.	Heterologous expression of a rice metallothionein isoform (OsMTI-1b) in Saccharomyces cerevisiae enhances cadmium, hydrogen peroxide and ethanol tolerance.	Braz. J. Microbiol.			2017	MTI1B	OsMT1b, MT1b, OsMT-I-1b, OsMTI-1b, MT-I-1b, MTI-1b, MT1La, OsMT1La, OsMT1
44186	28229491	Yue W., Ying Y., Wang C., Zhao Y., Dong C., Whelan J., Shou H.	OsNLA1, a RING-type ubiquitin ligase, maintains phosphate homeostasis in Oryza sativa via degradation of phosphate transporters.	Plant J.			2017	PT2,NLA1,PT8,RFPHC-1	OsPT2, PTH1-2, OsPht1;2, PHT1;2, OsPHT1;2,OsRFPHC-13, OsNLA, NLA, OsNLA1, OsNLA1.1, OsNLA1.2, OsNLA1.3,  OsRING269, RING269,OsPT8, PHT1-8, OsPht1;8, Pht1;8, PHT1;8, OsPHT1;8,OsRFPHC-1, OsNLA2, NLA2, OsNLA2.1, OsNLA2.2, OsRING348, RING348
44187	28160062	Beringer J., Chen W., Garton R., Sardesai N., Wang P.H., Zhou N., Gupta M., Wu H.	Comparison of the impact of viral and plant-derived promoters regulating selectable marker gene on maize transformation and transgene expression.	Plant Cell Rep.	36(4)	519-528	2017	ACT1	act1, AC1, RAC1, RAc1, ACT11, OsACT1
44188	28244994	Zong Y., Wang Y., Li C., Zhang R., Chen K., Ran Y., Qiu J.L., Wang D., Gao C.	Precise base editing in rice, wheat and maize with a Cas9-cytidine deaminase fusion.	Nat. Biotechnol.	35(5)	438-440	2017		
44189	28282268	Song H.T., Yang Y.M., Liu D.K., Xu X.Q., Xiao W.J., Liu Z.L., Xia W.C., Wang C.Y., Yu X., Jiang Z.B.	Construction of recombinant Yarrowia lipolytica and its application in bio-transformation of lignocellulose.	Bioengineered		1-6	2017		
44190	28189051	Meng D., Fricke W.	Changes in root hydraulic conductivity facilitate the overall hydraulic response of rice (Oryza sativa L.) cultivars to salt and osmotic stress.	Plant Physiol. Biochem.	113	64-77	2017		
44191	28235420	Xu J., Li Y., Wang Y., Liu X., Zhu X.G.	Altered expression profiles of microRNA families during de-etiolation of maize and rice leaves.	BMC Res Notes	10(1)	108	2017		
44192	28185358	Taniguchi M., Ochiai A., Toyoda R., Sato T., Saitoh E., Kato T., Tanaka T.	Effects of arginine and leucine substitutions on anti-endotoxic activities and mechanisms of action of cationic and amphipathic antimicrobial octadecapeptide from rice alpha-amylase.	J. Pept. Sci.	23(3)	252-260	2017		
44193	28243709	Kasuga K., Sasaki A., Matsuo T., Yamamoto C., Minato Y., Kuwahara N., Fujii C., Kobayashi M., Agematu H., Tamura T., Komatsu M., Ishikawa J., Ikeda H., Kojima I.	Heterologous production of kasugamycin, an aminoglycoside antibiotic from Streptomyces kasugaensis, in Streptomyces lividans and Rhodococcus erythropolis L-88 by constitutive expression of the biosynthetic gene cluster.	Appl. Microbiol. Biotechnol.	101(10)	4259-4268	2017		
44194	28483049	Wang W.J., Zheng K.L., Gong X.D., Xu J.L., Huang J.R., Lin D.Z., Dong Y.J.	The rice TCD11 encoding plastid ribosomal protein S6 is essential for chloroplast development at low temperature.	Plant Sci.	259	1-11	2017	TCD11	RPS6, OsRPS6, OsTCD11
44195	28282527	Onaga G., Wydra K., Koopmann B., Chebotarov D., S?r? Y., Von Tiedemann A.	High temperature effects on Pi54 conferred resistance to Magnaporthe oryzae in two genetic backgrounds of Oryza sativa.	J. Plant Physiol.	212	80-93	2017		
44196	28245796	Li C., Luo C., Zhou Z., Wang R., Ling F., Xiao L., Lin Y., Chen H.	Gene expression and plant hormone levels in two contrasting rice genotypes responding to brown planthopper infestation.	BMC Plant Biol.	17(1)	57	2017		
44197	28173747	Liu P.L., Du L., Huang Y., Gao S.M., Yu M.	Origin and diversification of leucine-rich repeat receptor-like protein kinase (LRR-RLK) genes in plants.	BMC Evol. Biol.	17(1)	47	2017		
44198	28215140	Javed M., Solanki M., Sinha A., Shukla L.I.	Position based nucleotide analysis of miR168 family in higher plants and its targets in mammalian transcripts.	Microrna			2017		
44199	28150142	Vatansever R., Filiz E., Eroglu S.	Genome-wide exploration of metal tolerance protein (MTP) genes in common wheat (Triticum aestivum): insights into metal homeostasis and biofortification.	Biometals	30(2)	217-235	2017		
44200	28176282	Dos Santos RS., Farias D.D.R., Pegoraro C., Rombaldi C.V., Fukao T., Wing R.A., de Oliveira AC.	Evolutionary analysis of the SUB1 locus across the Oryza genomes.	Rice (N Y)	10(1)	4	2017		
44201	28166742	Li X., Shahid M.Q., Xia J., Lu Z., Fang N., Wang L., Wu J., Chen Z., Liu X.	Analysis of small RNAs revealed differential expressions during pollen and embryo sac development in autotetraploid rice.	BMC Genomics	18(1)	129	2017		
44202	28225074	Peng X., Yan T., Sun M.	The WASP-Arp2/3 complex signal cascade is involved in actin-dependent sperm nuclei migration during double fertilization in tobacco and maize.	Sci Rep	7	43161	2017		
44203	28205154	Tang M., Ning Y., Shu X., Dong B., Zhang H., Wu D., Wang H., Wang G.L., Zhou B.	The Nup98 Homolog APIP12 Targeted by the Effector AvrPiz-t is Involved in Rice Basal Resistance Against Magnaporthe oryzae.	Rice (N Y)	10(1)	5	2017	_,PR1-12,PR1A,CHT1,_,PR4C,PR10A,_,PR4,_,RSOSPR10,_,PR10B,RBBI3-3,_,CHT8,APIP6,PR1B,_	OsNucAP2, NUCAP2,OsPR1#012, PR1#012, OsPR1-12, OsPR1.1, PR1.1,OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1, OsPR1b, PR1alpha, OsPR1alpha,Cht1*(Chi1), Ch16, Cht1, CHT-1, CH16, RC24, OsChia1a, OsChia1, Chi1, Cht1*, Chi-1, Cht-1, Cht1, RCC1, OsCht-1, PR3, OsPR3,TLP, PR5, OsTLP, OsPR5,OsPR4c,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,PR10, OsPR10C, PR10C,OsPR4, OsPR4a, PR4a, OsPR-4,OsPR2, PR2, OsGlu1, Glu1,RSOsPR10, RsOsPR10a, OsPR10a, OsPR10alpha, OsPR10, PR10, OsBETV1, BETV1,APIP12,RPR10b, PR-10b, PR10b, PBZ1, PBZ-1, OsPBZc, OsPR10b, BetV, OsBetV,RBBI3-3, OsBBPI, BBPI, IBP1.2, OsIBP1.2, OsBBTI5, BBTI5,OsNucAP3, NUCAP3,Cht8, OsChia2a, Cht2, Rcht2, Chia2a, CHIT14, OsCHIT14, OsPR3,OsAPIP6,  OsRING382, RING382, IPI7, OsIPI7,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1, OsPR1a, PR1a,MOS3/SAR3, MOS3, SAR3, OsNucAP1, NUCAP1, OsNup96, Nup96
44204	28330563	Itoh Y., Crofts N., Abe M., Hosaka Y., Fujita N.	Characterization of the endosperm starch and the pleiotropic effects of biosynthetic enzymes on their properties in novel mutant rice lines with high resistant starch and amylose content.	Plant Sci.	258	52-60	2017		
44205	28202263	Yu H.Y., Wang X., Li F., Li B., Liu C., Wang Q., Lei J.	Arsenic mobility and bioavailability in paddy soil under iron compound amendments at different growth stages of rice.	Environ. Pollut.	224	136-147	2017		
44206	28199670	Wang S., Lei C., Wang J., Ma J., Tang S., Wang C., Zhao K., Tian P., Zhang H., Qi C., Cheng Z., Zhang X., Guo X., Liu L., Wu C., Wan J.	SPL33, encoding an eEF1A-like protein, negatively regulates cell death and defense responses in rice.	J. Exp. Bot.	68(5)	899-913	2017	FGL,SPL33,HPPD,SGR,POX3006,SODB,PR10A,RBCS,GABA-T,RBCL	fgl(fl), fl, fgl, OsFGL, OsPorB, PoPA, PORA, porA, OsPORA, PORB, OsPORB,LMM5.1, SPL33/LMM5.1, OsSPL33, OsLMM5.1,OsHPPD, Osl30, l30,sgr(t), sgr, OsSGR, OsSgr, SGR1, OsSGR1,POX3006, prx114, Osprx114, PO-C1, POC-1, POC1, OsPOC1, Prx14, OsPrx14, POD3006, OsPOD3006,SodB, Fe-SOD, Fe- SOD, OsFe-SOD, Fe+-SOD, OsFe+-SOD, OsFe-SODa, OsFe-SODb, OsFeSODb, FeSODb, OsFSD1.2, FSD1.2, FeSOD2, OsFSD2, FSD2, OsFSD1, FSD1, ALM1, OsALM1,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,rbcS, OsRbcS, RBCS-C, RbcS2, OsRBCS2, RbcS1, OsRbcS2, OsrbcS1,Osl2, l2, OsGABA-T,rbcL, rbcA, OsrbcL
44207	28193162	Wang Y., Qiao L., Bai J., Wang P., Duan W., Yuan S., Yuan G., Zhang F., Zhang L., Zhao C.	Genome-wide characterization of JASMONATE-ZIM DOMAIN transcription repressors in wheat (Triticum aestivum L.).	BMC Genomics	18(1)	152	2017		
44208	28236273	Wu Z.J., Wang W.L., Zhuang J.	Developmental processes and responses to hormonal stimuli in tea plant (Camellia sinensis) leaves are controlled by GRF and GIF gene families.	Funct. Integr. Genomics			2017		
44209	28042888	Ye M., Song Y.Y., Baerson S.R., Long J., Wang J., Pan Z., Lin W.X., Zeng R.S.	Ratoon rice generated from primed parent plants exhibit enhanced herbivore resistance.	Plant Cell Environ.	40(5)	779-787	2017		
44210	28232208	Wang Y., Gupta R., Song W., Huh H.H., Lee S.E., Wu J., Agrawal G.K., Rakwal R., Kang K.Y., Park S.R., Kim S.T.	Label-free quantitative secretome analysis of Xanthomonas oryzae pv. oryzae highlights the involvement of a novel cysteine protease in its pathogenicity.	J Proteomics			2017		
44211	28243987	Inukai T.	Differential Regulation of Starch-synthetic Gene Expression in Endosperm Between Indica and Japonica Rice Cultivars.	Rice (N Y)	10(1)	7	2017		
44212	28213905	Yu C., Chen H., Tian F., Yang F., Yuan X., Yang C.H., He C.	A ten gene-containing genomic island determines flagellin glycosylation: implication for its regulatory role in motility and virulence of Xanthomonas oryzae pv. oryzae.	Mol. Plant Pathol.			2017		
44213	28282528	Sun L., Di D., Li G., Kronzucker H.J., Shi W.	Spatio-temporal dynamics in global rice gene expression (Oryza sativa?L.) in response to high ammonium stress.	J. Plant Physiol.	212	94-104	2017		
44214	28162958	Zhao J., Liu P., Li C., Wang Y., Guo L., Jiang G., Zhai W.	lmm5.1 and lmm5.4, two eukaryotic translation elongation factor 1A-like gene family members, negatively affect cell death and disease resistance in rice.	J Genet Genomics	44(2)	107-118	2017	_,SPL33	LMM5.4,LMM5.1, SPL33/LMM5.1, OsSPL33, OsLMM5.1
44215	28205522	Zheng X.M., Tao Y.L., Chi H., Wan F.H., Chu D.	Adaptability of small brown planthopper to four rice cultivars using life table and population projection method.	Sci Rep	7	42399	2017		
44216	28205641	Han Y., Ma F., Nawaz M., Wang Y., Cai W., Zhao J., He Y., Hua H., Zou Y.	The tiered-evaluation of the effects of transgenic Cry1C rice on Cyrtorhinus lividipennis, a main predator of Nilaparvata lugens.	Sci Rep	7	42572	2017		
44217	28211909	Tang X., Lowder L.G., Zhang T., Malzahn A.A., Zheng X., Voytas D.F., Zhong Z., Chen Y., Ren Q., Li Q., Kirkland E.R., Zhang Y., Qi Y.	A CRISPR-Cpf1 system for efficient genome editing and transcriptional repression in plants.	Nat Plants	3	17018	2017		
44218	28170228	Jia M., Zhou K., Tufts S., Schulte S., Peters R.J.	A Pair of Residues That Interactively Affect Diterpene Synthase Product Outcome.	ACS Chem. Biol.	12(3)	862-867	2017		
44219	28238020	Conner J.A., Podio M., Ozias-Akins P.	Haploid embryo production in rice and maize induced by PsASGR-BBML transgenes.	Plant Reproduction	30(1)	41-52	2017		
44220	28371690	Singh A.P., Dixit G., Kumar A., Mishra S., Kumar N., Dixit S., Singh P.K., Dwivedi S., Trivedi P.K., Pandey V., Dhankher O.P., Norton G.J., Chakrabarty D., Tripathi R.D.	A protective role for nitric oxide and salicylic acid for arsenite phytotoxicity in rice (Oryza sativa L.).	Plant Physiol. Biochem.	115	163-173	2017		
44221	28169454	Fort D.J., Todhunter K., Fort T.D., Mathis M.B., Walker R., Hansel M., Hall S., Richards R., Anderson K.	Toxicity of sulfide to early life stages of wild rice (Zizania palustris).	Environmental Toxicology and Chemistry			2017		
44222	28168155	He X., Chen X., Lin S., Mo X., Zhou P., Zhang Z., Lu Y., Yang Y., Gu H., Shang Z., Lou Y., Wu J.	Diversity-Oriented Synthesis of Natural-Product-like Libraries Containing a 3-Methylbenzofuran Moiety for the Discovery of New Chemical Elicitors.	ChemistryOpen	6(1)	102-111	2017		
44223	28291639	Li X., Zhou W., Ren Y., Tian X., Lv T., Wang Z., Fang J., Chu C., Yang J., Bu Q.	High-efficiency breeding of early-maturing rice cultivars via CRISPR/Cas9-mediated genome editing.	J Genet Genomics	44(3)	175-178	2017		
44224	28192204	Kuttiyatveetil J.R., Sanders D.A.	Analysis of plant UDP-arabinopyranose mutase (UAM): Role of divalent metals and structure prediction.	Biochim. Biophys. Acta	1865(5)	510-519	2017		
44225	28212609	Kan C.C., Chung T.Y., Wu H.Y., Juo Y.A., Hsieh M.H.	Exogenous glutamate rapidly induces the expression of genes involved in metabolism and defense responses in rice roots.	BMC Genomics	18(1)	186	2017		
44226	28163300	Li N., Chen J., Yang F., Wei S., Kong L., Ding X., Chu Z.	Identification of two novel Rhizoctonia solani-inducible cis-acting elements in the promoter of the maize gene, GRMZM2G315431.	Sci Rep	7	42059	2017		
44227	28082603	Vilela M.M., Del Bem LE., Van Sluys MA., de Setta N., Kitajima J.P., Cruz G.M., Sfor?a DA., de Souza AP., Ferreira P.C., Grativol C., Cardoso-Silva CB., Vicentini R., Vincentz M.	Analysis of Three Sugarcane Homo/Homeologous Regions Suggests Independent Polyploidization Events of Saccharum officinarum and Saccharum spontaneum.	Genome Biol Evol	9(2)	266-278	2017		
44228	28461723	Ling L., Song L., Wang Y., Guo C.	Genome-wide analysis and expression patterns of the NAC transcription factor family in Medicago truncatula.	Physiol Mol Biol Plants	23(2)	343-356	2017		
44229	28251460	Cheng Q., Mao W., Xie W., Liu Q., Cao J., Yuan M., Zhang Q., Li X., Wang S.	Characterization of a disease susceptibility locus for exploring an efficient way to improve rice resistance against bacterial blight.	Sci China Life Sci	60(3)	298-306	2017		
44230	28087829	Hwang Y., Choi H.S., Cho H.M., Cho H.T.	Tracheophytes Contain Conserved Orthologs of a Basic Helix-Loop-Helix Transcription Factor That Modulate root hair SPECIFIC Genes.	Plant Cell	29(1)	39-53	2017	_,_	OsbHLH128, bHLH128, OsRSL6, RSL6, DLN190, OsDLN190,OsbHLH130, bHLH130, OsRSL9, RSL9, DLN264, OsDLN264
44231	28082384	Pu C.X., Han Y.F., Zhu S., Song F.Y., Zhao Y., Wang C.Y., Zhang Y.C., Yang Q., Wang J., Bu S.L., Sun L.J., Zhang S.W., Zhang S.Q., Sun D.Y., Sun Y.	The Rice Receptor-Like Kinases DWARF AND RUNTISH SPIKELET1 and 2 Repress Cell Death and Affect Sugar Utilization during Reproductive Development.	Plant Cell	29(1)	70-89	2017	CIN3,UGP2,MST8,UDT1,CSA,WX1,DPW2,DRUS1,MS2,CYP704B2,CP1,DRUS2	OSINV4, OsINV4, INV4, OsCIN3,Ugp2, OsUgp2,OsMST8, OSMST8, OsSTP8, STP8,Udt1, bHLH164, OsUDT1, OsbHLH164 ,csa, OsCSA,wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx,OsDPW2,OsCrRLK1L8, CrRLK1L8, FLR1, OsFLR1, OsMRLK11, MRLK11, OsDRUS1,OsMS2, OsDPW, DPW, DPW1, OsDPW1, OsFAR2, FAR2,OsCYP704B2,OsCP1, Os CP1,YK1, OsCrRLK1L5, CrRLK1L5, OsDRUS2, OsMRLK3, MRLK3, FLR2, OsFLR2
44232	28100707	Qiao S., Sun S., Wang L., Wu Z., Li C., Li X., Wang T., Leng L., Tian W., Lu T., Wang X.	The RLA1/SMOS1 Transcription Factor Functions with OsBZR1 to Regulate Brassinosteroid Signaling and Rice Architecture.	Plant Cell	29(2)	292-309	2017	D2,IBH1,BRD1,D11,BIN2,DWARF4,BZR1,NGR5	d2, dwf2, CYP90D2, D2/CYP90D2, OsD2, SMG11, OsSMG11, D2/SMG11, OsD2a, OsD2b,Os IBH1, OsIBH1, OsbHLH175, bHLH175,brd1, OsDWARF, DWARF, OsBR6ox, BR6ox, CYP85A1, CYP85A4, OsDWF, CYP85A1/OsDWARF, OsBRD1, OsCYP85A1,d11(d8), dwf10, d8, D11/CYP724B1, d11, CYP724B1, GNS4, OsD11, PMM1, OsPMM1, PMM1/D11, NBG4, OsCPB1, CPB1, CPB1/D11,GSK2, Os GSK2, OsGSK2, Os BIN2, OsBIN2, BIN2/GSK2, OsSK22/OsGSK7, OsSK22, OsGSK7, SK22, GSK7, OsSK22/GSK2 ,OsDWARF4, osdwarf4, OsDWF4, DWF4, CYP90B2, OsCYP90B2, D4, OsD4,OsBZR1, Os BZR1, OsBES1-6, BES1-6,ERF142, OsERF#142, OsERF142, AP2/EREBP#049, AP2/EREBP49, SMOS1, OsSMOS1, SHB, OsAP2-EREBP-049, RLA1, RLA1/SMOS1, OsERF142/SMOS1, OsNGR5, GR5, OsGR5
44233	28087830	Ortiz D., de Guillen K., Cesari S., Chalvon V., Gracy J., Padilla A., Kroj T.	Recognition of the Magnaporthe oryzae Effector AVR-Pia by the Decoy Domain of the Rice NLR Immune Receptor RGA5.	Plant Cell	29(1)	156-168	2017	RGA5	Os11gRGA5, OsRGA5, RGA5-A, RGA5-B, Pi5, Pias-2
44234	28100706	Liu Q., Ning Y., Zhang Y., Yu N., Zhao C., Zhan X., Wu W., Chen D., Wei X., Wang G.L., Cheng S., Cao L.	OsCUL3a Negatively Regulates Cell Death and Immunity by Degrading OsNPR1 in Rice.	Plant Cell	29(2)	345-359	2017	WRKY45,NH1,PR10A,SPL88 ,_,PR1A,CUL3B,PR1B,AOS2,PAL1,_,CUL3BC	OsWRKY45, OsWRKY45-1, OsWRKY45-2, WRKY45-1, WRKY45-2,OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2, DLN5, OsDLN5,  OsBTBA1, BTBA1,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsCUL3a, CUL3a, OsSPL88 ,OsRBX1a, RBX1a,  OsRING442, RING442,OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1, OsPR1b, PR1alpha, OsPR1alpha,OsCUL3b, CUL3b,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1, OsPR1a, PR1a,OsAOS2, CYP74A2, OsAOS, OsAOS1,OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6,OsRBX1b, RBX1b,  OsRING441, RING441,OsCUL3c, CUL3c
44235	28082511	Men X., Shi J., Liang W., Zhang Q., Lian G., Quan S., Zhu L., Luo Z., Chen M., Zhang D.	Glycerol-3-Phosphate Acyltransferase 3 (OsGPAT3) is required for anther development and male fertility in rice.	J. Exp. Bot.	68(3)	513-526	2017	_,_,_,CYP704B2,_,BHLH142,GPAT3,_,_,_,_,_,MTR1,CYP703A3,_,_,TDR,_,_,MS2,RAM2,RAM2L,_	GPAT,GPAT,GPAT,OsCYP704B2,GPAT,OsbHLH142, bHLH142, TIP2, OsTIP2, TIP2/TDR/bHLH142,OsGPAT3,GPAT, OsGPAT,GPAT,GPAT,GPAT,GPAT,OsMTR1,OsCYP703A3,GPAT, OsGPAT,GPAT,tdr, OsbHLH005, bHLH005, OsbHLH5, bhlh5, TDR1, OsTDR, OsTDR1, OsMYC5, MYC5,GPAT,GPAT,OsMS2, OsDPW, DPW, DPW1, OsDPW1, OsFAR2, FAR2,GPAT, OsRAM2,GPAT, OsRAM2L,GPAT
44236	28146098	Liu Q., Luo L., Wang X., Shen Z., Zheng L.	Comprehensive Analysis of Rice Laccase Gene (OsLAC) Family and Ectopic Expression of OsLAC10 Enhances Tolerance to Copper Stress in Arabidopsis.	Int J Mol Sci	18(2)		2017	LAC21,LAC3,LAC27,LAC6,LAC30,LAC24,LAC22,LAC13,LAC7,LAC2,LAC16,LAC10,LAC1,LAC4,LAC17,LAC19,LAC5,LAC20,LAC25,LAC9,LAC29,LAC11,LAC28,LAC12,LAC8,LAC26,LAC18,LAC15,LAC23	OsLAC21,OsChI1, ChI1, OsLAC3,OsLAC27,OsLAC6,OsLAC30,OsLAC24,OsLAC22,OsLAC13,OsLAC7,OsLAC2,OsLAC16,OsLAC10,OsLAC1 ,Oslacc, lacc, OsLAC4, OsLAC17, LAC17,OsLAC17,OsLAC19,OsLAC5,OsLAC20,OsLAC25,OsLAC9,OsLAC29,Lac, OsLAC11, LAC10, OsLAC10,OsLAC28,OsLAC12,OsLAC8, OsLAC7, LAC7,OsLAC26,OsLAC18,OsLAC, LAC, OsLAC15, OsLAC13, LAC13 ,OsLAC23, OsLAC19, LAC19
44237	28079456	Hakata M., Muramatsu M., Nakamura H., Hara N., Kishimoto M., Iida-Okada K., Kajikawa M., Imai-Toki N., Toki S., Nagamura Y., Yamakawa H., Ichikawa H.	Overexpression of TIFY genes promotes plant growth in rice through jasmonate signaling.	Biosci. Biotechnol. Biochem.	81(5)	906-913	2017	TIFY10B,TIFY10A,TIFY11C,TIFY11B,TIFY9,TIFY10C,TIFY11E,TIFY11D,EG2,TIFY11A	OsJAZ6, OsJAZ 7, OsJAZ7, OsTIFY10B, JAZ6, JAZ7,OsJAZ5, JAZ5, JAZ6, OsJAZ6, OsTIFY10A,OsJAZ2, JAZ2, OsJAZ 11, OsJAZ11, Os-JAZ11, JAZ11, OsTIFY11c, OsJAZ1, JAZ1,OsJAZ4, JAZ4, OsJAZ 10, OsJAZ10, JAZ10, OsTIFY11b,OsJAZ11, OsJAZ5, OsTIFY9, JAZ11, JAZ5, JAZ11/TIFY9 ,OsJAZ7, JAZ7, OsJAZ 8, OsJAZ8, Os-JAZ8, JAZ8, OsTIFY10c, OsTIFY10c/OsJAZ8,OsJAZ 13, OsJAZ13,JAZ13, OsTIFY11e, OsJAZ13a, OsJAZ13b, OsJAZ13c, OsJAZ13d,OsTIFY11d, OsJAZ1, JAZ1, OsJAZ 12, OsJAZ12, JAZ12,OsTIFY3, OsJAZ10, OsJAZ 1, OsJAZ1, JAZ1, EG2/OsJAZ1, EG2, JAZ1/EG2,OsJAZ3, JAZ3, OsJAZ 9, OsJAZ9, Os-JAZ9, JAZ9, OsTIFY11a, OsJAZ6, JAZ6
44238	28111288	Wang C., Wang G., Zhang C., Zhu P., Dai H., Yu N., He Z., Xu L., Wang E.	OsCERK1-Mediated Chitin Perception and Immune Signaling Requires Receptor-like Cytoplasmic Kinase 185 to Activate an MAPK Cascade in Rice.	Mol Plant	10(4)	619-633	2017	CHT1,SMG1,PR10A,CERK1,MKK5,SMG2,_,RLCK185,MAPKKKEPSILON	Cht1*(Chi1), Ch16, Cht1, CHT-1, CH16, RC24, OsChia1a, OsChia1, Chi1, Cht1*, Chi-1, Cht-1, Cht1, RCC1, OsCht-1, PR3, OsPR3,OsMKK4, MKK4, OsMKK4/SMG1, OsMAPKK4, MAPKK4, OsMEK4, MEK4, OsSMG1, SMG1/OsMEK6, OsMEK6, MEK6, OsSTS, STS,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsCERK1, OsLysM-RLK9, Os-CERK1, Os-LysM-RLK9, OsLysMRLK9, OsCERK1/OsLYK9, OsLYK9, LYK9,OsMKK5, BUD1, OsBUD1,YDA1, OsMKKK10, MKKK10, SMG2/OsMKKK10, OsSMG2, OsMAPKKK10, MAPKKK10,OsMAPKKKalpha, MAPKKKalpha,OsRLCK185,OsMAPKKKepsilon, MAPKKKepsilon, OsMAPKKK24, MAPKKK24
44239	28344585	Kumar M., Choi J., An G., Kim S.R.	Ectopic Expression of OsSta2 Enhances Salt Stress Tolerance in Rice.	Front Plant Sci	8	316	2017	ERF95	OsERF#095, OsERF095, OsERF95, AP2/EREBP#020, AP2/EREBP20, OsSta2, Sta2 
44240	28278216	Masuda H., Shimochi E., Hamada T., Senoura T., Kobayashi T., Aung M.S., Ishimaru Y., Ogo Y., Nakanishi H., Nishizawa N.K.	A new transgenic rice line exhibiting enhanced ferric iron reduction and phytosiderophore production confers tolerance to low iron availability in calcareous soil.	PLoS ONE	12(3)	e0173441	2017	YSL15,NAS2,DMAS1,NAAT1,NAS1,IRT1,IRO2,TOM1	OsYSL15, OsYs7,OsNAS2, OsNAS1,OsDMAS1, OsAKR5, AKR5,OsNAAT1,OsNAS1,OsIRT1, ZIP10, OsZIP10, OsZIP12, ZIP12,OsIRO2, OsbHLH056, bHLH056, bHLH56, OsbHLH56,OsTOM1, ZIFL4, OsZIFL4 
44241	28069545	Hirano K., Yoshida H., Aya K., Kawamura M., Hayashi M., Hobo T., Sato-Izawa K., Kitano H., Ueguchi-Tanaka M., Matsuoka M.	SMALL ORGAN SIZE 1 and SMALL ORGAN SIZE 2/DWARF AND LOW-TILLERING Form a Complex to Integrate Auxin and Brassinosteroid Signaling in Rice.	Mol Plant	10(4)	590-604	2017	NSP2,SHR1,NGR5,DLT,SLR1,GRAS26,IAA3,GRAS10,PHI1,GRAS37,GRAS4,GRAS7	Os NSP2, OsNSP2, OsGRAS-13, OsGRAS13, GRAS-13, GRAS13, OsGRAS12, GRAS12,OsSHR1, OsGRAS-38, OsGRAS38, GRAS-38, GRAS38, DLN189, OsDLN189, OsSHR, SHR,ERF142, OsERF#142, OsERF142, AP2/EREBP#049, AP2/EREBP49, SMOS1, OsSMOS1, SHB, OsAP2-EREBP-049, RLA1, RLA1/SMOS1, OsERF142/SMOS1, OsNGR5, GR5, OsGR5,dlt, OsGRAS32, OsDLT, OsDLT1, DTL1, OsGRAS-32, OsGRAS32, GRAS-32, GRAS32, SMOS2/DLT, SMOS2, OsSMOS2, OsGS6, GS6,slr1-1, slr1, slr, GAI, OsGAI, OsSLR1, Os SLR1, OsRGA1, OsGRAS-18, OsGRAS-18, GRAS-18, GRAS18, SLR-1,OsGRAS-26, OsGRAS26, GRAS-26, DLN137, OsDLN137, OsGRAS23, GRAS23 ,OsIAA3,OsGRAS-10, OsGRAS10, GRAS-10,OsPHI1, OsPHI-1, PHI-1,OsGRAS-37, OsGRAS37, GRAS-37, OsGRAS35, GRAS35 ,OsGRAS-4, OsGRAS4, GRAS-4,OsGRAS-7, OsGRAS7, GRAS-7
44242	28326089	Yang J., Yuan Z., Meng Q., Huang G., P?rin C., Bureau C., Meunier A.C., Ingouff M., Bennett M.J., Liang W., Zhang D.	Dynamic Regulation of Auxin Response during Rice Development Revealed by Newly Established Hormone Biosensor Markers.	Front Plant Sci	8	256	2017	PIN1D,JAR1,GH3-2,JAR3,RAU1,PIN1B,PIN1A,JAR2,PIN1C	OsPIN1D, OsPIN1d,OsJAR1, OsGH3.5, GH3.5, OsGH3-5, GH3-5,OsGH3-2, OsGH3.2, GH3.2,OsJAR3, OsGH3.12, GH3.12, OsGH3-12, GH3-12,OsLAX1, OsRAU1, OsAUX1, LAX1, AUX1,PIN1A, OsPIN1A, OsPIN1a, REH1, OsPIN1, OsPIN1b, REH1/OsPIN1,PIN1C, OsPIN1C, OsPIN1c, OsPIN1a,OsJAR2, OsGH3.3, GH3.3, OsGH3-3, JAR2/GH3-3, GH3-3, OsGH3.3/OsJAR2,PIN1B, OsPIN1B, OsPIN1b, OsPIN1c
44243	28117552	Li F., Xie G., Huang J., Zhang R., Li Y., Zhang M., Wang Y., Li A., Li X., Xia T., Qu C., Hu F., Ragauskas A.J., Peng L.	OsCESA9 conserved-site mutation leads to largely enhanced plant lodging resistance and biomass enzymatic saccharification by reducing cellulose DP and crystallinity in rice.	Plant Biotechnol. J.			2017	BC6,CESA7,BC7	Bc6*, Bc6, OsCesA9, CESA9, OsCESA9, OS_CESA09, OsCesA 9, CesA9, BC88, SDBC1, OsSDBC1,OsCesA7, OsCESA7, OS_CESA07, OsCesA 7, CesA7,OsCesA4, OsCESA4, CESA4, OS_CESA04, BC11, bc7t, Bc7(t), bc-7, OsCesA 4, CesA4, FC17/CESA4, FC17, OsFC17
44244	28163713	Byun M.Y., Cui L.H., Oh T.K., Jung Y.J., Lee A., Park K.Y., Kang B.G., Kim W.T.	Homologous U-box E3 Ubiquitin Ligases OsPUB2 and OsPUB3 Are Involved in the Positive Regulation of Low Temperature Stress Response in Rice (Oryza sativa L.).	Front Plant Sci	8	16	2017	MYBS3,PUB2,MDR7,GAD3,WRKY77,TPP2,PUB3	OsMYBS3,OsPUB2, OsPUB02,  OsPUB2, PUB2,MDR4, OsABCB5, ABCB5, OsPGP5, OsMDR7, OsISC28, MRP4, OsMRP4, OsABCB11, ABCB11, MR7, OsMR7,OsGAD3,OsWRKY77, WRKY-77,OsTPP2,OsPUB3, OsPUB03,  OsPUB3, PUB3
44245	28054650	Li S., Wei X., Ren Y., Qiu J., Jiao G., Guo X., Tang S., Wan J., Hu P.	osbt1 encodes an ADP-glucose transporter involved in starch synthesis and compound granule formation in rice endosperm.	Sci Rep	7	40124	2017	BT1-1	OsBT1-1, OsEnS-29, OsBT1, OsBt1, BT1, Bt1, OsBt1-1, shr3, OsBT1-2, BT1-2
44246	28424709	Holappa L.D., Ronald P.C., Kramer E.M.	Evolutionary Analysis of Snf1-Related Protein Kinase2 (SnRK2) and Calcium Sensor (SCS) Gene Lineages, and Dimerization of Rice Homologs, Suggest Deep Biochemical Conservation across Angiosperms.	Front Plant Sci	8	395	2017	_,SAPK2,SAPK4,SAPK9,OSK1,SAPK8,SAPK5,SAPK6,SCS1,SAPK1,OSK4,SAPK10,SAPK3	OsDSR-1, DSR-1,OsSAPK2, OsSnRK2.2, SnRK2.2,OsSAPK4, OsSnRK2.4, SnRK2.4,OsSAPK9, OsSnRK2.9, SnRK2.9,osk1, SnRK1A, OsSnRK1A, OsSNRK1a, SnRK1A/OSK1, SnRK1a, OsSnRK1.2, SnRK1.2, OsSnRK1alphaA, SnRK1alphaA,OsSAPK8, OsSnRK2.8, SnRK2.8,OsSAPK5, OsSnRK2.5, SnRK2.5,OsSAPK6, OSRK1, OsSnRK2.6, SnRK2.6,OsSCS1,OsSAPK1, OsSnRK2.1, SnRK2.1,osk4, OsK4, OsATG1c, ATG1C, SnRK1B, snrk1b, SnRK1B/OSK24, OSK24, OsK24, OsSNRK1b, OsSnRK1.4, SnRK1.4, OsSnRK1alphaC, SnRK1alphaC,OsSAPK10, OsSnRK2.10, SnRK2.10,OsSAPK3, REK, OsSnRK2.3, SnRK2.3
44247	28081268	Li Z., Ding B., Zhou X., Wang G.L.	The Rice Dynamin-Related Protein OsDRP1E Negatively Regulates Programmed Cell Death by Controlling the Release of cytochrome c from mitochondria.	PLoS Pathog.	13(1)	e1006157	2017	KS4,AOS2,DRP1B,_,DRP1A,DRP2A,ICL,DRP1D,DJLM,DRP3A,DRP2C,DRP3B,PR5,NAC4	OsKS4, KS4, KSL4, OsKSL4, DTS2, OsDTS2, OsTPS16, TPS16, TPS8, OsTPS8,OsAOS2, CYP74A2, OsAOS, OsAOS1,OsDRP1B,OsDRP3C, DRP3C,OsDRP1A,OsDRP2A,OsEnS-107, EnS-107, OsI85, I85, OsICL, Osl85, l43, Osl43, OsL85,OsDRP1C, DRP1C, OsDRP1D,DJ-LM, OsDRP1E, DRP1E ,OsDRP3A,OsDRP2C,OsDRP3B,OsPR5, Pir2, PR-5, PR5-1,OsNAC4, NAC68, ONAC068, OnNAC4*, OnNAC4, OsNAC4/ONAC068
44248	28119718	Liu H., Guo Z., Gu F., Ke S., Sun D., Dong S., Liu W., Huang M., Xiao W., Yang G., Liu Y., Guo T., Wang H., Wang J., Chen Z.	4-Coumarate-CoA Ligase-Like Gene OsAAE3 Negatively Mediates the Rice Blast Resistance, Floret Development and Lignin Biosynthesis.	Front Plant Sci	7	2041	2016	_,PR1A,PR1B	OsAAE3, AAE3, OsOCS, OCS, 4CL,OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1, OsPR1b, PR1alpha, OsPR1alpha,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1, OsPR1a, PR1a
44249	28095114	Tan J., Wu F., Wan J.	Flowering time regulation by the CONSTANS-like gene OsCOL10.	Plant Signal Behav	12(1)	e1267893	2017	HD3A,GHD7,RFT1,BBX10,EF1	Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,Ghd2, Ghd7, OsGhd7, OsCCT26, OsCMF8, OsI, Ghd7/Hd4, Hd4, EH7-1/Hd4, Ghd7-0a, EH7-1, EH7/Ghd7, EH7, OsEH7, GLW7.1, OsGLW7.1,FT-L 3, OsFTL3, FTL3, FT-L3, RFT, OsRFT1,OsBBX10, OsJ, OsCCT14, OsCOL10, COL10, OsCOL9, CCT14, COL9,Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 
44250	28068433	Bollinedi H., S GK., Prabhu K.V., Singh N.K., Mishra S., Khurana J.P., Singh A.K.	Molecular and Functional Characterization of GR2-R1 Event Based Backcross Derived Lines of Golden Rice in the Genetic Background of a Mega Rice Variety Swarna.	PLoS ONE	12(1)	e0169600	2017	RAU1,GNP1,NCED1,ABA1,CPS1	OsLAX1, OsRAU1, OsAUX1, LAX1, AUX1,GA20OX1, OsGA20ox1, 20ox1, GA20ox-1, ga20ox1, Os20ox, C20OX2, OsGA20ox2, OsGA20ox-1, GA20ox1, OsGNP1,OSNCED1, OsNCED-1, OsNCED3, OsNced3, NCED3, OsNCED9, NCED9,OsABA1, Zep1, OsAba1, Aba2, OsAba2, OsZep1, Zep, OsZep, Aba1, OsABA2, Osaba1, OsZEP-1, OsZEP, OSZEP1, ZEP1, ZEP,OsCPS1, OsCPS1ent, OsCPS, Os CPS1, OsTPS4, TPS4, TPS29, OsTPS29, OsCPS1-L, OsCPS1-S
44251	28232844	Takatsuji H.	Regulating Tradeoffs to Improve Rice Production.	Front Plant Sci	8	171	2017	WRKY62,NH1,WRKY45,_,_,DSG1,MKK10-2	OsWRKY62, OsWRKY62.1, OsWRKY62.2, XB10, OsWRKY62-1, OsWRKY62-2,OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2, DLN5, OsDLN5,  OsBTBA1, BTBA1,OsWRKY45, OsWRKY45-1, OsWRKY45-2, WRKY45-1, WRKY45-2,OsPP127, OsPTP1, PTP1,OsPTP2, PTP2,OsMAPK6, MAPK6, OsMPK6, OsSIPK, SIPK, OsMAPK1, MAPK1, MPK1, OsMPK1, MPK6, OsDSG1,OsMKK10-2, MKK10-2D, OsMPKK10-2, MPKK10-2, OsMKK10.2, MKK10.2, OsMPKK10-2D, MPKK10-2D, MPKK10.2, OsMAPKK10-2, MAPKK10-2, OsMEK3. MEK3
44252	28220140	Liu H., Dong S., Gu F., Liu W., Yang G., Huang M., Xiao W., Liu Y., Guo T., Wang H., Chen Z., Wang J.	NBS-LRR Protein Pik-H4 Interacts with OsBIHD1 to Balance Rice Blast Resistance and Growth by Coordinating Ethylene-Brassinosteroid Pathway.	Front Plant Sci	8	127	2017	PIK,BIHD1,CYP734A2,ACO3	Pik, RMg8, Pi-k, Pik-2, Pik-1, Pik1, Pik2, Pik-H4, Pikp-1, Pikh-1, Pik1-H4, Pikh-2, Pik2-H4,OsBIHD1,OsCYP734A2,OsACO3, ACO2, OsACO2
44253	28049740	Wang C., Higgins J.D., He Y., Lu P., Zhang D., Liang W.	Resolvase OsGEN1 Mediates DNA Repair by Homologous Recombination.	Plant Physiol.	173(2)	1316-1329	2017	RAD,SEND1	rad,rad*, OsRAD, GEN1, OsGEN-L, OsGEN1 ,OsSEND-1, OsSEND1
44254	28261251	Batth R., Singh K., Kumari S., Mustafiz A.	Transcript Profiling Reveals the Presence of Abiotic Stress and Developmental Stage Specific ascorbate oxidase Genes in Plants.	Front Plant Sci	8	198	2017	AAO1,AAO2,ORAP1,AAO3,AAO5	OsAAO1,OsAAO2, L-APX, RIP5, OsRIP5,OsORAP1, OzT9, AO, OsAAO4, AAO4,OsAAO3,OsAAO5
44255	28068345	Goretti D., Martignago D., Landini M., Brambilla V., G?mez-Ariza J., Gnesutta N., Galbiati F., Collani S., Takagi H., Terauchi R., Mantovani R., Fornara F.	Transcriptional and Post-transcriptional Mechanisms Limit HEADING DATE 1 (Hd1) Function to Adapt Rice to High Latitudes.	PLoS Genet.	13(1)	e1006530	2017	HD3A,HAP5E,HAP5A,HD5,SE1,HD2	Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,OsHAP5E, NF-YC, CBF-C, OsNF-YC7, Os-NF-YC7, NF-YC7, NFYC7,OsHAP5A, NF-YC, CBF-C, OsNF-YC1, Os-NF-YC1, NF-YC1, NFYC1 , OsNF-YC4-2, NF-YC4-2,Hd5(t)*, Hd5, qHD5, HAP3H, OsHAP3H, NF-YB, CBF-A, DTH8 , qHD5(t)*, Ghd8, Ghd8/DTH8, Lhd1, NF-YB11, OsNF-YB11, NFYB11, LH8, DTH8/Ghd8, RH8, DTH8/Ghd8/LHD1, CAR8, DTH8/Ghd8/ OsHAP3H, EF8, OsEF8,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, OsHd1,  Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,Hd2(t), Hd2, qHD2(t), OsPRR37, Os-PRR37, PRR37, Prr4, OsPRR4, DTH7, Os DTH7, OsCCT28, CCT28, Ghd7.1, PRR37/Hd2, EH7-2, EH7-2/Hd2, Hd2/PRR37, PRR37-1a, PRR37-1b, PRR37-1c, PRR37-2a, PRR37- 2, HD7.2
44256	28129387	Wang X., Huang R., Quan R.	Mutation in Mg-protoporphyrin IX monomethyl ester cyclase Decreases Photosynthesis Capacity in Rice.	PLoS ONE	12(1)	e0171118	2017	YL1	MTC, OsMTC, YGL8, OsYGL8, OsCRD1, CRD1, OsCRD, CRD, YL-1, PNZIP, OsPNZIP
44257	28116829	Mehra P., Pandey B.K., Giri J.	Improvement in phosphate acquisition and utilization by a secretory purple acid phosphatase (OsPAP21b) in rice.	Plant Biotechnol. J.			2017	PAP21B,PAP3B,PT4,PHR2,PAP10A,PAP23,PT2,PAP10C,PAP27A,PT9	OsPAP21b,OsPAP3b,OsPT4, PHT1-4, OsPht1;4, PHT1-2, PHT1;4, OsPHT1;4,OsPHR2, Os-PHR2,OsPAP10a, PAP10, OsPAP2, PAP2,OsPAP23,OsPT2, PTH1-2, OsPht1;2, PHT1;2, OsPHT1;2,OsPAP10c,OsPAP27a, NPP6, OsNPP6,OsPT9, PHT1-9, OsPht1;9
44258	28298917	Chen Y., Han Y.H., Cao Y., Zhu Y.G., Rathinasabapathi B., Ma L.Q.	Arsenic Transport in Rice and Biological Solutions to Reduce Arsenic Risk from Rice.	Front Plant Sci	8	268	2017	MRP1,ACR2.1,ACR2.2,_,GRX9,NIP3;2,NIP1;1,HAC1;2,HAC1;1 ,PIP2;4,PIP2;6,ASA,PIP2;7,PT8,LSI6,LSI1,GRX4,LSI2,NRAMP1	OsABCC1, ABCC1, OsABCC1-1, OsABCC1-2, OsMRP1,CDC25.1, OsACR2.1, OsStr20, STR20,CDC25.2, OsACR2.2, OsStr21, STR21,OsCLT1, CLT1,OsGRX9, OsGrx_C2.1, Grx_C2.1 ,OsNIP3;2, NIP3-2, OsNIP3.2, NIP3.2,OsNIP1;1, NIP1-1, rMIP1, MIP1, OsNIP1.1, NIP1.1,OsStr6, STR6, OsRhST, RLD, OsHAC1;2,OsStr5, STR5, OsHAC1;1,OsPIP2;4, PIP2.4, PIP2-4, OsPIP2-4,OsPIP2;6, PIP2-6, OsPIP2-6, PIP2-5, OsPIP2-5,OsNIP3;1, NIP3;1, NIP3-1, OsNIP3.1, NIP3.1, OsASA,OsPIP2;7, PIP2.7, PIP2-7, OsPIP2-6, OsPIP-3A, PIP-3A,OsPT8, PHT1-8, OsPht1;8, Pht1;8, PHT1;8, OsPHT1;8,Lsi6, OsNIP2;2, NIP2-2, OsLsi6, OsNIP2.2/OsLsi6, OsNIP2.2, NIP2.2,lsi1, NIP2-1, OsNIP2;1, NIP2;1, OsLsi1, lsi(t), OsNIP2.1/OsLsi1/OsSIIT1, OsNIP2.1, NIP2.1,OsGRX4, OsGrx_C7, Grx_C7,Lsi2, SIET1, OsLsi2, OsSIET1,OsNramp1, OsNRAMP1, OsNramp6
44259	27964781	Zhou B., Lin J.Z., Peng D., Yang Y.Z., Guo M., Tang D.Y., Tan X., Liu X.M.	Plant architecture and grain yield are regulated by the novel DHHC-type zinc finger protein genes in rice (Oryza sativa L.).	Plant Sci.	254	12-21	2017	DHHC1	OsDHHC1, OsPAT15, PAT15, OsDHHC06, DHHC06, OsDHHC6, DHHC6
44260	28197164	Ding W., Tong H., Zheng W., Ye J., Pan Z., Zhang B., Zhu S.	Isolation, Characterization and Transcriptome Analysis of a Cytokinin Receptor Mutant Osckt1 in Rice.	Front Plant Sci	8	88	2017	CKT1	OHK5, HK, OsHK6, HK6, Crl1a, Ohk5, OsHK1, OsCKT1 
44261	28134341	Hu D., Li Y., Jin W., Gong H., He Q., Li Y.	Identification and Characterization of a Plastidic Adenine Nucleotide Uniporter (OsBT1-3) Required for Chloroplast Development in the Early Leaf Stage of Rice.	Sci Rep	7	41355	2017	BT1-3	OsBT1-3, SLA
44262	28423046	Cui D., Tang C., Li J., A X., Yu T., Ma X., Zhang E., Wang Y., Cao G., Xu F., Dai L., Han L., Koh H.J.	Genetic structure and isolation by altitude in rice landraces of Yunnan, China revealed by nucleotide and microsatellite marker polymorphisms.	PLoS ONE	12(4)	e0175731	2017	EF1,LK3,_,GS5,GBSSII,_,_,CATA,PID3	Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,lk3(t), lk3(t)*, SG3, GS3, SG3-GS3, OsGW3, OsGS3, RGG3/GS3/Mi/OsGGC1, RGG3, Mi, OsGGC1, GGC1, OsSYL3, SYL3, TT2, OsTT2,STS22,OsSCP26, SCP26, OsGS5,GBSS2, OsGBSSII, OsGBSS2,NP1977, OsVDAC8, VDAC8, Os1977,STS90,CATA1, Cat A1*, OSCAT-A, Cat2, CatA1, CAT-A, OsCatA, OsCAT, CAT, catA, OSCATA, OsCATc, OsCATA, OsCAT1A, CAT1, OsCAT1, OsCATC, OsCAT2,Pi-d3, Pid3, Pi25, Pid3-I1, qBRM6.2
44263	28197156	Adachi S., Yoshikawa K., Yamanouchi U., Tanabata T., Sun J., Ookawa T., Yamamoto T., Sage R.F., Hirasawa T., Yonemaru J.	Fine Mapping of Carbon Assimilation Rate 8, a Quantitative Trait Locus for Flag leaf nitrogen content, stomatal conductance and Photosynthesis in Rice.	Front Plant Sci	8	60	2017	HD5	Hd5(t)*, Hd5, qHD5, HAP3H, OsHAP3H, NF-YB, CBF-A, DTH8 , qHD5(t)*, Ghd8, Ghd8/DTH8, Lhd1, NF-YB11, OsNF-YB11, NFYB11, LH8, DTH8/Ghd8, RH8, DTH8/Ghd8/LHD1, CAR8, DTH8/Ghd8/ OsHAP3H, EF8, OsEF8
44264	28491065	Yoo Y.H., Nalini Chandran AK., Park J.C., Gho Y.S., Lee S.W., An G., Jung K.H.	OsPhyB-Mediating Novel Regulatory Pathway for drought tolerance in Rice Root Identified by a Global RNA-Seq Transcriptome Analysis of Rice Genes in Response to Water Deficiencies.	Front Plant Sci	8	580	2017	_,PHYB,_,HSFB2C,_	,phyB, PHYB1, OsPHYB, OsphyB, OsYHB, YHB, OsPHYB/OsYHB,,HSfB2c, OsHsfB2c, OsHsf-24, HSF24, OsHSF24 ,
44265	28062835	Lv Y., Yang M., Hu D., Yang Z., Ma S., Li X., Xiong L.	The osmyb30 Transcription Factor Suppresses cold tolerance by Interacting with a JAZ Protein and Suppressing beta-amylase Expression.	Plant Physiol.	173(2)	1475-1491	2017	MYB30,BMY10 ,BMY6,BMY2,TIFY11A,BMY1	OsMYB30, OsMYB5P, MYB5P, OsMYB13a, MYB13a, Os2R_MYB26, 2R_MYB26, OsMYB30C, MYB30C,OsBMY10, OsBES1-3, BES1-3,,OsBMY2, OsBmy6, Bmy6,OsJAZ3, JAZ3, OsJAZ 9, OsJAZ9, Os-JAZ9, JAZ9, OsTIFY11a, OsJAZ6, JAZ6,OsBMY1 
44266	28067270	Ogawa S., Miyamoto K., Nemoto K., Sawasaki T., Yamane H., Nojiri H., Okada K.	OsMYC2, an essential factor for JA-inductive sakuranetin production in rice, interacts with MYC2-like proteins that enhance its transactivation ability.	Sci Rep	7	40175	2017	_,MYB14,NOMT,PL,BHLH10,BHLH9	OsbHLH008, bHLH008, OsMYL2, MYL2, DLN6, OsDLN6, OsMYC1, MYC1,OsMYB14, OsJAdMYB1, JAdMYB1, Os2R_MYB12, 2R_MYB12 ,OsNOMT, COMTL3, OsCOMTL3, OsCOMT29, COMT29,OsMYB55, OsMYB-2, MYB55, MYB-2, OsPL, Os2R_MYB60, 2R_MYB60,OsICE1, ICE1, OsbHLH010, bHLH010, OsMYL1, MYL1, bHLH116, OsMYC3, MYC3 ,OsbHLH009, bHLH009, OsMYC2, MYC2
44267	28064119	Saidi M.N., Mergby D., Brini F.	Identification and expression analysis of the NAC transcription factor family in durum wheat (Triticum turgidum L. ssp. durum).	Plant Physiol. Biochem.	112	117-128	2017		
44268	28124144	Li J., Cai N.J., Xue J., Yang J., Chen J.P., Zhang H.M.	Interaction between southern rice black-streaked dwarf virus minor core protein P8 and a rice zinc finger transcription factor.	Arch. Virol.	162(5)	1261-1273	2017	_	OsbHLH033, bHLH033, bHLH33, OsZFP, ZFP 
44269	28293247	Huang H., Nguyen Thi Thu T., He X., Gravot A., Bernillon S., Ballini E., Morel J.B.	Increase of Fungal Pathogenicity and Role of Plant Glutamine in Nitrogen-Induced Susceptibility (NIS) To Rice Blast.	Front Plant Sci	8	265	2017	GLN1;2	OsGLN1;2, GSr, RGS8, OsGS1;2, GS1;2, GS1, OsGS1-2, GS1-2, OsGS1.2, GS1.2
44270	28043949	Zhu S., Wang J., Cai M., Zhang H., Wu F., Xu Y., Li C., Cheng Z., Zhang X., Guo X., Sheng P., Wu M., Wang J., Lei C., Wang J., Zhao Z., Wu C., Wang H., Wan J.	The OsHAPL1-DTH8-Hd1 complex functions as the transcription regulator to repress heading date in rice.	J. Exp. Bot.	68(3)	553-568	2017	EF1,SE1,HD3A,HD5,RFT1,DRAP2	Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, OsHd1,  Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,Hd5(t)*, Hd5, qHD5, HAP3H, OsHAP3H, NF-YB, CBF-A, DTH8 , qHD5(t)*, Ghd8, Ghd8/DTH8, Lhd1, NF-YB11, OsNF-YB11, NFYB11, LH8, DTH8/Ghd8, RH8, DTH8/Ghd8/LHD1, CAR8, DTH8/Ghd8/ OsHAP3H, EF8, OsEF8,FT-L 3, OsFTL3, FTL3, FT-L3, RFT, OsRFT1,OsDrAp2, DrAp2, OsHAPL1, HAPL1, DLN150, OsDLN150
44271	28124210	Yabuki Y., Ohashi M., Imagawa F., Ishiyama K., Beier M.P., Konishi N., Umetsu-Ohashi T., Hayakawa T., Yamaya T., Kojima S.	A temporal and spatial contribution of asparaginase to asparagine catabolism during development of rice grains.	Rice (N Y)	10(1)	3	2017	ASNASE1  ,ASNASE2	OsASNase1, ASNase1 ,OsASNase2, ASNase2
44272	28394944	Zhang M., Liu B.	Identification of a rice metal tolerance protein OsMTP11 as a manganese transporter.	PLoS ONE	12(4)	e0174987	2017	MTP11	OsMTP11, OsMTP5, MTP5
44273	28102545	Almadanim M.C., Alexandre B.M., Rosa M.T., Sapeta H., Leit?o AE., Ramalho J.C., Lam T.T., Negr?o S., Abreu I.A., Oliveira M.M.	Rice calcium-dependent protein kinase OsCPK17 targets plasma membrane intrinsic protein and sucrose-phosphate synthase and is required for a proper cold stress response.	Plant Cell Environ.			2017	PIP2;6,PDHE1A,SPS8,_,ABC1,PIP2A,CDPK17,SPS11	OsPIP2;6, PIP2-6, OsPIP2-6, PIP2-5, OsPIP2-5,OsPDHE1-A,OsSPS8, OsSPS4, SPS4,OsNR1, NR1, nia1, OsNIA1, NIA1, OsNIA2, NIA2,OsABC1, SPL32, OsSPL32, OsGLU, OsFd-GOGAT, Fd-GOGAT, ABC1/ OsFd-GOGAT ,OsPIP2a, PIP2-1, PIP2a, PIP2.1, OsPIP2;1, PIP2;1, OsPIP2-1,OsCDPK17, OsCPK17, CPK17, OsCPK17.1, OsCPK17.2, OsCPK17.3, OsCPK17.4, OsCPK17.5,sps11, OsSPS11, OsSPS5, SPS5
44274	28059073	Wu J., Yang R., Yang Z., Yao S., Zhao S., Wang Y., Li P., Song X., Jin L., Zhou T., Lan Y., Xie L., Zhou X., Chu C., Qi Y., Cao X., Li Y.	ROS accumulation and antiviral defence control by microRNA528 in rice.	Nat Plants	3	16203	2017		
44275	28119700	Zhao X., Chen T., Feng B., Zhang C., Peng S., Zhang X., Fu G., Tao L.	Non-photochemical Quenching Plays a Key Role in Light Acclimation of Rice Plants Differing in leaf color.	Front Plant Sci	7	1968	2016		
44276	28326091	Sun Y., Jiao G., Liu Z., Zhang X., Li J., Guo X., Du W., Du J., Francis F., Zhao Y., Xia L.	Generation of High-Amylose Rice through CRISPR/Cas9-Mediated Targeted Mutagenesis of Starch Branching Enzymes.	Front Plant Sci	8	298	2017		
44277	28303149	Singh U.M., Yadav S., Dixit S., Ramayya P.J., Devi M.N., Raman K.A., Kumar A.	QTL Hotspots for Early Vigor and Related Traits under Dry Direct-Seeded System in Rice (Oryza sativa L.).	Front Plant Sci	8	286	2017		
44278	28064177	Zhu X.F., Zhu C.Q., Wang C., Dong X.Y., Shen R.F.	Nitric oxide acts upstream of ethylene in cell wall phosphorus reutilization in phosphorus-deficient rice.	J. Exp. Bot.	68(3)	753-760	2017		
44279	28217135	Sun Y., Huang X., Ning Y., Jing W., Bruce T.J., Qi F., Xu Q., Wu K., Zhang Y., Guo Y.	TPS46, a Rice Terpene Synthase Conferring Natural Resistance to Bird Cherry-Oat Aphid, Rhopalosiphum padi (Linnaeus).	Front Plant Sci	8	110	2017	_	OsTPS31, TPS31, OsSTPS, TPS46, tps46, OsTPS46, SSBis039, OsTPS10, TPS10, TPS7, OsTPS7
44280	28101096	Wang X., Pang Y., Wang C., Chen K., Zhu Y., Shen C., Ali J., Xu J., Li Z.	New Candidate Genes Affecting Rice Grain Appearance and Milling Quality Detected by Genome-Wide and Gene-Based Association Analyses.	Front Plant Sci	7	1998	2016		
44281	28328971	Ying J., Zhao J., Hou Y., Wang Y., Qiu J., Li Z., Tong X., Shi Z., Zhu J., Zhang J.	Mapping the N-linked glycosites of rice (Oryza sativa L.) germinating embryos.	PLoS ONE	12(3)	e0173853	2017		
44282	28040882	Du Y., Liu L., Li M., Fang S., Shen X., Chu J., Zhang Z.	UNBRANCHED3 regulates branching by modulating cytokinin biosynthesis and signaling in maize and rice.	New Phytol.	214(2)	721-733	2017		
44283	28119424	Kono M., Yamori W., Suzuki Y., Terashima I.	Photoprotection of PSI by Far-Red Light Against the Fluctuating Light-Induced Photoinhibition in Arabidopsis thaliana and Field-Grown Plants.	Plant Cell Physiol.	58(1)	35-45	2017		
44284	28348570	Kaya H., Numa H., Nishizawa-Yokoi A., Toki S., Habu Y.	DNA Methylation Affects the Efficiency of Transcription Activator-Like Effector Nucleases-Mediated Genome Editing in Rice.	Front Plant Sci	8	302	2017		
44285	28448589	Awasthi J.P., Saha B., Regon P., Sahoo S., Chowra U., Pradhan A., Roy A., Panda S.K.	Morpho-physiological analysis of tolerance to aluminum toxicity in rice varieties of North East India.	PLoS ONE	12(4)	e0176357	2017		
44286	28428794	Yu H., Ruan B., Wang Z., Ren D., Zhang Y., Leng Y., Zeng D., Hu J., Zhang G., Zhu L., Gao Z., Chen G., Guo L., Chen W., Qian Q.	Fine Mapping of a Novel defective glume 1 (dg1) Mutant, Which Affects Vegetative and Spikelet Development in Rice.	Front Plant Sci	8	486	2017	BZR1,RAG,D2,DG1,BRD1,BG1,D61,LK3,ACBP1,MCM4,CYCT1;1,DL,GW2,LHS1,MADS58,SPW1,MADS4,CDKB2;1 ,EXPB5,MCM5,CDKF;1,RAP1B,WD40-109,RAP1A,MADS2,EXPA2,EXPA32,GW8,GE1	OsBZR1, Os BZR1, OsBES1-6, BES1-6,MADS3, OsMADS3, OsMADS3(t), RMADS222, RAG1, rf3,d2, dwf2, CYP90D2, D2/CYP90D2, OsD2, SMG11, OsSMG11, D2/SMG11, OsD2a, OsD2b,,brd1, OsDWARF, DWARF, OsBR6ox, BR6ox, CYP85A1, CYP85A4, OsDWF, CYP85A1/OsDWARF, OsBRD1, OsCYP85A1,OsaBG1, OsBG1,d61*, dwf42, d61, OsBRI1, OSBRI1, BRI1, Os BRI1, Osbri1, OsBRKq1, BRKq1,lk3(t), lk3(t)*, SG3, GS3, SG3-GS3, OsGW3, OsGS3, RGG3/GS3/Mi/OsGGC1, RGG3, Mi, OsGGC1, GGC1, OsSYL3, SYL3, TT2, OsTT2,OsACBP1,OsMCM4,CycT1;1, CycT1;os;1, Orysa;CycT1;1, CYCT1,OsDL, dl(lop), lop, dl, dl1, OsDRPq3, DRPq3,OsGW2, OsRING429, RING429, GNL44, OsGNL44,OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO, OsLHS1, OsLG3b, LG3b, qLGY3, LGY3, DLN80, OsDLN80, OLR, OsOLR, GW3p6, OsGW3p6, OsMADS1GW3p6, MADS1GW3p6, qLGY3/OsLG3b/GW3p6,OsMADS58,SPW1, spw1, MADS16, OsMADS16,OsMADS4, PI1, DLN140, OsDLN140,Orysa;CDKB2;1, OsCDKB2;1, cdc2Os3, Oscdc20s-3, cdc20s-3, Orysa;CDKB;2, CYCB2.1, CDKB-2, OsCDKB-2,OsEXPB5, osaEXPb1.19,OsMCM5,CDKF;1, Orysa;CDKF;1, CDKF1, CDKF-1/CAK1AT, CDKF-1, CAK1AT, CAK1A,MADS14, OsMADS14, FDRMADS6, RMADS211, AGL10,OsWD40-109, OsCDC20, CDC20, CDC20.1, OsCDC20.1,  OsCDC20-2, CDC20-2, OsCDC20B, CDC20B,OsMADS15, FDRMADS3, RMADS215, MADS15, DEP,OsMADS2, RMADS219, NMADS1, PI2, nmads1, DLN33, OsDLN33,OsEXP2, OsEXP2(Os-EXP2), Os-EXP2, EXPA2, OsEXPA2, OsaEXPa1.23, RiExB, RiExC, Os-EXPA2,OsEXPA32,SPL16, OsSPL16, SLP1, OsSLP1, qGW8, OsGW8,ge1, ge, CYP78A13, OsCYP78A13, GE, BG2, GES, OsGE/CYP78B5, CYP78B5, OsCYP78B5
44287	28107426	Zhang J.W., Long Y., Xue M.D., Xiao X.G., Pei X.W.	Identification of microRNAs in Response to Drought in Common Wild Rice (Oryza rufipogon Griff.) Shoots and Roots.	PLoS ONE	12(1)	e0170330	2017		
44288	28070759	Han Z., Hu W., Tan C., Xing Y.	QTLs for heading date and plant height under multiple environments in rice.	Genetica	145(1)	67-77	2017		
44289	28487705	Pandit E., Tasleem S., Barik S.R., Mohanty D.P., Nayak D.K., Mohanty S.P., Das S., Pradhan S.K.	Genome-Wide Association Mapping Reveals Multiple QTLs Governing Tolerance Response for Seedling Stage Chilling Stress in Indica Rice.	Front Plant Sci	8	552	2017		
44290	28174588	Huang J., Wang Y., Liu W., Shen X., Fan Q., Jian S., Tang T.	EARE-1, a Transcriptionally Active Ty1/Copia-Like Retrotransposon Has Colonized the Genome of Excoecaria agallocha through Horizontal Transfer.	Front Plant Sci	8	45	2017		
44291	28321231	Tang Y., Liu K., Zhang J., Li X., Xu K., Zhang Y., Qi J., Yu D., Wang J., Li C.	JcDREB2, a Physic Nut AP2/ERF gene, Alters Plant Growth and Salinity Stress Responses in Transgenic Rice.	Front Plant Sci	8	306	2017		
44292	28439286	Zhao P., Zhang J., Qian C., Zhou Q., Zhao X., Chen G., Ma X.F.	SNP Discovery and Genetic Variation of Candidate Genes Relevant to heat tolerance and Agronomic Traits in Natural Populations of Sand Rice (Agriophyllum squarrosum).	Front Plant Sci	8	536	2017		
44293	28091610	Sun J., Shi S., Gong W., Yang J., Du L., Song S., Chen B., Zhang Z.	Evaluation of hyperspectral LiDAR for monitoring rice leaf nitrogen by comparison with multispectral LiDAR and passive spectrometer.	Sci Rep	7	40362	2017		
44294	28191468	Sahebi M., Hanafi M.M., Rafii M.Y., Azizi P., Abiri R., Kalhori N., Atabaki N.	Screening and Expression of a Silicon Transporter Gene (Lsi1) in Wild-Type Indica Rice Cultivars.	Biomed Res Int	2017	9064129	2017		
44295	28096805	Xiao N., Wu Y., Pan C., Yu L., Chen Y., Liu G., Li Y., Zhang X., Wang Z., Dai Z., Liang C., Li A.	Improving of Rice Blast Resistances in Japonica by Pyramiding Major R Genes.	Front Plant Sci	7	1918	2016		
44296	28278154	Ali J., Xu J.L., Gao Y.M., Ma X.F., Meng L.J., Wang Y., Pang Y.L., Guan Y.S., Xu M.R., Revilleza J.E., Franje N.J., Zhou S.C., Li Z.K.	Harnessing the hidden genetic diversity for improving multiple abiotic stress tolerance in rice (Oryza sativa L.).	PLoS ONE	12(3)	e0172515	2017		
44297	28144248	Li Y., Zhao S.L., Li J.L., Hu X.H., Wang H., Cao X.L., Xu Y.J., Zhao Z.X., Xiao Z.Y., Yang N., Fan J., Huang F., Wang W.M.	Osa-miR169 Negatively Regulates Rice Immunity against the Blast Fungus Magnaporthe oryzae.	Front Plant Sci	8	2	2017		
44298	28139777	Sun L., Wang Y., Liu L.L., Wang C., Gan T., Zhang Z., Wang Y., Wang D., Niu M., Long W., Li X., Zheng M., Jiang L., Wan J.	Isolation and characterization of a spotted leaf 32 mutant with early leaf senescence and enhanced defense response in rice.	Sci Rep	7	41846	2017	ICL,SGR,WRKY23,SALT,ABC1,WRKY72	OsEnS-107, EnS-107, OsI85, I85, OsICL, Osl85, l43, Osl43, OsL85,sgr(t), sgr, OsSGR, OsSgr, SGR1, OsSGR1,OsWRKY23,salT*(sal1), SalT1*, sal1, Sal1, SALT, ML, SalT, OsSalT, OsJRL, JRL, Osl43, OsL43, OsMBL1, MBL1, OsJRL01, JRL01, OsJRL1, JRL1,OsABC1, SPL32, OsSPL32, OsGLU, OsFd-GOGAT, Fd-GOGAT, ABC1/ OsFd-GOGAT ,OsWRKY72, WRKY-72
44299	28377781	Li S., Xia Q., Wang F., Yu X., Ma J., Kou H., Lin X., Gao X., Liu B.	Laser Irradiation-Induced DNA Methylation Changes Are Heritable and Accompanied with Transpositional Activation of mPing in Rice.	Front Plant Sci	8	363	2017	DNG701,CMT3,AGO1A,MPING,MET1B,AGO4A,DRM3,DRM2,DDM1B,TA2,AGO4B,AGO1B	ROS1C, ROS1c, Os ROS1C, DME2, OsDNG701, ROS1C/DNG701,OsCMT3, CMT3-1, CMT2, OsCMT2,OsAGO1a, AGO1a, AGO10, AGO1-1 ,mPing,OsMET1b, OsMET1-2, MET1b, MET1,OsAGO4a, AGO4-2,OsDRM3, DRM2-2 ,OsDRM2, osdrm2, DRM2-1,OsDDM1b, DDM1b, DDM1, DLN98, OsDLN98, CHR741, OsCHR741,ROS1A, ROS1a, DME1, OsROS1A, OsROS1, ROS1, mOsROS1, ROS1A/DNG702, DNG702, OsDNG702,OsAGO4b, AGO4-1 ,OsAGO1b, AGO1b, AGO1-2 
44300	28085154	Lazar C.S., Baker B.J., Seitz K.W., Teske A.P.	Genomic reconstruction of multiple lineages of uncultured benthic archaea suggests distinct biogeochemical roles and ecological niches.	ISME J	11(5)	1118-1129	2017		
44301	28107733	Xiaochuang C., Chu Z., Lianfeng Z., Junhua Z., Hussain S., Lianghuan W., Qianyu J.	Glycine increases cold tolerance in rice via the regulation of N uptake, physiological characteristics, and photosynthesis.	Plant Physiol. Biochem.	112	251-260	2017		
44302	27896367	Sun B., Zhan X.D., Lin Z.C., Wu W.X., Yu P., Zhang Y.X., Sun L.P., Cao L.Y., Cheng S.H.	Erratum to: Fine mapping and candidate gene analysis of qHD5, a novel major QTL with pleiotropism for yield-related traits in rice (Oryza sativa L.).	Theor. Appl. Genet.	130(1)	259	2017		
44303	28128411	Hasan N., Rafii M.Y., Abdul Rahim H., Nusaibah S.A., Mazlan N., Abdullah S.	Genetic analysis and identification of SSR markers associated with rice blast disease in a BC2F1 backcross population.	Genet. Mol. Res.	16(1)		2017		
44304	28419172	Wang Z., Han Q., Zi Q., Lv S., Qiu D., Zeng H.	Enhanced disease resistance and drought tolerance in transgenic rice plants overexpressing protein elicitors from Magnaporthe oryzae.	PLoS ONE	12(4)	e0175734	2017		
44305	28392792	Cao Y.Y., Yang J.F., Liu T.Y., Su Z.F., Zhu F.Y., Chen M.X., Fan T., Ye N.H., Feng Z., Wang L.J., Hao G.F., Zhang J., Liu Y.G.	A Phylogenetically Informed Comparison of GH1 Hydrolases between Arabidopsis and Rice Response to Stressors.	Front Plant Sci	8	350	2017		
44306	28369122	Nakamura A., Tochio N., Fujioka S., Ito S., Kigawa T., Shimada Y., Matsuoka M., Yoshida S., Kinoshita T., Asami T., Seto H., Nakano T.	Molecular actions of two synthetic brassinosteroids, iso-carbaBL and 6-deoxoBL, which cause altered physiological activities between Arabidopsis and rice.	PLoS ONE	12(4)	e0174015	2017		
44307	28282385	Shakiba E., Edwards J.D., Jodari F., Duke S.E., Baldo A.M., Korniliev P., McCouch S.R., Eizenga G.C.	Genetic architecture of cold tolerance in rice (Oryza sativa) determined through high resolution genome-wide analysis.	PLoS ONE	12(3)	e0172133	2017		
44308	28361000	Hay F.R., Whitehouse K.J.	Rethinking the approach to viability monitoring in seed genebanks.	Conserv Physiol	5(1)	cox009	2017		
44309	28367158	Wu C., Cui K., Wang W., Li Q., Fahad S., Hu Q., Huang J., Nie L., Mohapatra P.K., Peng S.	Heat-Induced Cytokinin Transportation and Degradation Are Associated with Reduced Panicle Cytokinin Expression and Fewer Spikelets per Panicle in Rice.	Front Plant Sci	8	371	2017		
44310	28128414	Lu X.B.	Cytotoxicity evaluation of the whole protein extract from Bar-transgenic rice on Mus musculus lymphocytes.	Genet. Mol. Res.	16(1)		2017		
44311	28098179	Ye W., Yu H., Jian Y., Zeng J., Ji R., Chen H., Lou Y.	A salivary EF-hand calcium-binding protein of the brown planthopper Nilaparvata lugens functions as an effector for defense responses in rice.	Sci Rep	7	40498	2017		
44312	28116312	Saki E., Saiful Yazan L., Mohd Ali R., Ahmad Z.	Chemopreventive Effects of Germinated Rough Rice Crude Extract in Inhibiting Azoxymethane-Induced Aberrant Crypt Foci Formation in Sprague-Dawley Rats.	Biomed Res Int	2017	9517287	2017		
44313	28326093	Asaf S., Waqas M., Khan A.L., Khan M.A., Kang S.M., Imran Q.M., Shahzad R., Bilal S., Yun B.W., Lee I.J.	The Complete Chloroplast Genome of Wild Rice (Oryza minuta) and Its Comparison to Related Species.	Front Plant Sci	8	304	2017		
44314	28445532	Yadav M.K., S A., Ngangkham U., Shubudhi H.N., Bag M.K., Adak T., Munda S., Samantaray S., Jena M.	Use of molecular markers in identification and characterization of resistance to rice blast in India.	PLoS ONE	12(4)	e0176236	2017	PIK,PITA,PIB,PIZ,PI3,PIKM,PI1,PIKP,PI9,PIKH,PI5-2,PIZT	Pik, RMg8, Pi-k, Pik-2, Pik-1, Pik1, Pik2, Pik-H4, Pikp-1, Pikh-1, Pik1-H4, Pikh-2, Pik2-H4,Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30, Trx30,Pi b(Pi s), Pis, Pib, Pi-s, Pi-hy,Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2,Pi3, Pi5, Pi-3(t), Pi-3, Pi3(t), Pi5(t), Pi5-1, Pii,  RMg22, RMg21,Pik-m, Pi-m, Pi-km, Pikm, Pi m, Pikm1-TS, Pikm2-TS, Pi-km1, Pi-km2,Pi1, Pi-1, Pi1-5C, Pi1-6C,Pik-p, Pi-kp, Pikp, Pikp-1, Pikp-2,Pi9(t), Pi9(t)*, Pi9, Pi-9(t),Pi-kh, Pi k-h, Pi54, Pi54rh, Pi-k(h), Pik-h, Pikh,Pi3, Pi5, Pi-3(t), Pi-3, Pi3(t), Pi5(t), Pi5-2, Pii,  RMg22, RMg21,Piz-t, Pi-zt, Pi-z(t), Pi2/Pizt, Pizt, Pi9, OsPiz-t
44315	28110460	Zhang H., Che J., Ge Y., Pei Y., Zhang L., Liu Q., Gu M., Tang S.	Ability of Rf5 and Rf6 to Restore Fertility of Chinsurah Boro II-type Cytoplasmic Male Sterile Oryza Sativa (ssp. Japonica) Lines.	Rice (N Y)	10(1)	2	2017		
44316	28149498	Ta K.N., Adam H., Staedler Y.M., Sch?nenberger J., Harrop T., Tregear J., Do N.V., Gantet P., Ghesqui?re A., Jouannic S.	Differences in meristem size and expression of branching genes are associated with variation in panicle phenotype in wild and domesticated African rice.	Evodevo	8	2	2017		
44317	28178571	Muthusamy S.K., Dalal M., Chinnusamy V., Bansal K.C.	Genome-wide identification and analysis of biotic and abiotic stress regulation of small heat shock protein (HSP20) family genes in bread wheat.	J. Plant Physiol.	211	100-113	2017		
44318	28056797	Yang N., Wang T.	Comparative proteomic analysis reveals a dynamic pollen plasma membrane protein map and the membrane landscape of receptor-like kinases and transporters important for pollen tube growth and interaction with pistils in rice.	BMC Plant Biol.	17(1)	2	2017		
44319	28134995	Nagel R., Turrini P.C., Nett R.S., Leach J.E., Verdier V., Van Sluys MA., Peters R.J.	An operon for production of bioactive gibberellin A4 phytohormone with wide distribution in the bacterial rice leaf streak pathogen Xanthomonas oryzae pv. oryzicola.	New Phytol.	214(3)	1260-1266	2017		
44320	28291806	Ju S., Yin N., Wang L., Zhang C., Wang Y.	Effects of silicon on Oryza sativa L. seedling roots under simulated acid rain stress.	PLoS ONE	12(3)	e0173378	2017		
44321	28174587	Liu Q., Yang T., Yu T., Zhang S., Mao X., Zhao J., Wang X., Dong J., Liu B.	Integrating Small RNA Sequencing with QTL Mapping for Identification of miRNAs and Their Target Genes Associated with heat tolerance at the Flowering Stage in Rice.	Front Plant Sci	8	43	2017		
44322	28113076	Guo Q., Meng L., Humphreys M.W., Scullion J., Mur L.A.	Expression of FlHMA3, a P1B2-ATPase from Festulolium loliaceum, correlates with response to cadmium stress.	Plant Physiol. Biochem.	112	270-277	2017		
44323	28494021	Tao T., Zhou C.J., Wang Q., Chen X.R., Sun Q., Zhao T.Y., Ye J.C., Wang Y., Zhang Z.Y., Zhang Y.L., Guo Z.J., Wang X.B., Li D.W., Yu J.L., Han C.G.	Rice black streaked dwarf virus P7-2 forms a SCF complex through binding to Oryza sativa SKP1-like proteins, and interacts with GID2 involved in the gibberellin pathway.	PLoS ONE	12(5)	e0177518	2017	_,GID2,_,_,OSK1,_,OSK20,_,_,_	OSK25,gid2, GF14e, OsGF14e, OsGID2, 14-3-3e,OSK6,OsCUL1, CUL1,SKP1, OsSKP1,OSK5,SKP20, OsSKP20,OSK10,OSK4,OSK9
44324	28167952	Wu X., Yu Y., Baerson S.R., Song Y., Liang G., Ding C., Niu J., Pan Z., Zeng R.	Interactions between Nitrogen and Silicon in Rice and Their Effects on Resistance toward the Brown Planthopper Nilaparvata lugens.	Front Plant Sci	8	28	2017		
44325	28138057	Kakei Y., Nakamura A., Yamamoto M., Ishida Y., Yamazaki C., Sato A., Narukawa-Nara M., Soeno K., Shimada Y.	Biochemical and chemical biology study of rice OsTAR1 revealed that tryptophan aminotransferase is involved in auxin biosynthesis; identification of a potent OsTAR1 inhibitor, pyruvamine2031.	Plant Cell Physiol.			2017		
44326	28139322	Xu X., Meng B., Zhang C., Feng X., Gu C., Guo J., Bishop K., Xu Z., Zhang S., Qiu G.	The local impact of a coal-fired power plant on inorganic mercury and methyl-mercury distribution in rice (Oryza sativa L.).	Environ. Pollut.	223	11-18	2017		
44327	28105032	Horvath M., Steinbiss H.H., Reiss B.	Gene Targeting Without DSB Induction Is Inefficient in Barley.	Front Plant Sci	7	1973	2016		
44328	28044270	Ribaudo C.M., Cur? JA., Cantore M.L.	Activation of a calcium-dependent protein kinase involved in the Azospirillum growth promotion in rice.	World J. Microbiol. Biotechnol.	33(2)	22	2017		
44329	28105039	Xu E., Chen M., He H., Zhan C., Cheng Y., Zhang H., Wang Z.	Proteomic Analysis Reveals Proteins Involved in Seed Imbibition under Salt Stress in Rice.	Front Plant Sci	7	2006	2016	CDP3.2,_,AGPS2,GLUB5,GLUA3,PGK2,CDP3.1 ,GLUBX,AGPL2,WX1,ARS,P0B,GLUC,FLO4	OsCDP3.2, FLOC3, OsFLOC3, OsCDP3.3, CDP3.3,BPM ,OsAGPS2a, AGPS2A, AGPS2B, OsAGPS2, osagps2, APS2, APS2a, APS2b, AGPS2a, APGS2b, OsAGPS2b, AGPP, GAS8, OsAPS2, OsAPS2a, OsAPS2b,GluB5, GLU2.3 ,Glua3*, GLUA-3, GT22, GT3, Glu21, GluA-3, OsEnS-47, EnS-47, GLU3,OsPGK2, OsPGK2a, OsPGK2b, OsPGK2c, PKP ,OsEnS-57, EnS-57, OsCDP3.1, OsCDP3.10, CDP3.10,OsGluBX, OsGluBX-J, OsGluBX-I, OsEnS-31, EnS-31, GLU2.1, GluB7, OsGluB7, GluB4, OsGluB4,OsAGPL2, osagpl2, APL2, OsAPL2, AGPiso, sh2, Sh2, GIF2, GAS1 ,wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx, ,ARP, OsP0B,GluC, OsEnS-36, EnS-36, GLU2.2, GluC-1, OsGluC-1,FLO4-4, flo4, flo4-2, flo4-3, ppdk, OsPPDK, PPDK1, CPDK1, PPDKB, OsPPDKB, cyOsPPDKB, OsPBDK, PBDK, osppdkb, PPD, cyPPDK, chPPDKB, chOsPPDKB
44330	28443109	Neelam K., Thakur S., Neha, Yadav I.S., Kumar K., Dhaliwal S.S., Singh K.	Novel Alleles of Phosphorus-Starvation Tolerance 1 Gene (PSTOL1) from Oryza rufipogon Confers High phosphorus uptake Efficiency.	Front Plant Sci	8	509	2017		
44331	28119474	Waite C., Schumacher J., Jovanovic M., Bennett M., Buck M.	Negative Autogenous Control of the Master Type III Secretion System Regulator HrpL in Pseudomonas syringae.	MBio	8(1)		2017		
44332	28421099	Wang J., Hu P., Chen Z., Liu Q., Wei C.	Progress in High-amylose Cereal Crops through Inactivation of Starch Branching Enzymes.	Front Plant Sci	8	469	2017		
44333	28078486	Kwon C.T., Kim S.H., Song G., Kim D., Paek N.C.	Two NADPH: Protochlorophyllide Oxidoreductase (POR) Isoforms Play Distinct Roles in Environmental Adaptation in Rice.	Rice (N Y)	10(1)	1	2017	FGL,CAB2R,PORA,CP29,YS53,YGL10,CHLH	fgl(fl), fl, fgl, OsFGL, OsPorB, PoPA, PORA, porA, OsPORA, PORB, OsPORB,Oscab2R, CAB-2, OsLhcp, Lhcb1, Lhcb1a, OsLhcb1, OsLhcb1a ,OsPorA, OsPORA,OsCP29, LHCB4, Lhcb4, OsLHCB4,GSA, GSAT, HEML, OsGSA, OsGSAT, OsHEML, OsGSAM, GSAM, OsYS53,CAO, OsCAO, CAO1, OsCAO1, Oslls1, Lls1, DVR, PGL,OsChlH, ChlH, OsCHLH
44334	28421086	Li K., Bao J., Corke H., Sun M.	Association Analysis of Markers Derived from Starch Biosynthesis Related Genes with Starch Physicochemical Properties in the USDA Rice Mini-Core Collection.	Front Plant Sci	8	424	2017		
44335	28261224	Moreno-Alvarado M., Garc?a-Morales S., Trejo-T?llez LI., Hidalgo-Contreras JV., G?mez-Merino FC.	Aluminum Enhances Growth and Sugar Concentration, Alters Macronutrient Status and Regulates the Expression of NAC Transcription Factors in Rice.	Front Plant Sci	8	73	2017		
44336	28450871	Perdomo J.A., Cap?-Bau?? S., Carmo-Silva E., Galm?s J.	Rubisco and Rubisco activase Play an Important Role in the Biochemical Limitations of Photosynthesis in Rice, Wheat, and Maize under High Temperature and Water Deficit.	Front Plant Sci	8	490	2017		
44337	27592006	Ahankari A.S., Myles P.R., Fogarty A.W., Dixit J.V., Tata L.J.	Prevalence of iron-deficiency anaemia and risk factors in 1010 adolescent girls from rural Maharashtra, India: a cross-sectional survey.	Public Health	142	159-166	2017		
44338	28107441	Liu L., Meng F., He Y., Zhu M., Shen Y., Zhang Z.	Fine Mapping and Candidate Gene Analysis of the Tiller Suppression Gene ts1 in Rice.	PLoS ONE	12(1)	e0170574	2017		
44339	28261226	Fu C., Wang F., Liu W., Liu D., Li J., Zhu M., Liao Y., Liu Z., Huang H., Zeng X., Ma X.	Transcriptomic Analysis Reveals New Insights into High-Temperature-Dependent Glume-Unclosing in an Elite Rice Male Sterile Line.	Front Plant Sci	8	112	2017		
44340	28110091	Zhou H., Li P., Xie W., Hussain S., Li Y., Xia D., Zhao H., Sun S., Chen J., Ye H., Hou J., Zhao D., Gao G., Zhang Q., Wang G., Lian X., Xiao J., Yu S., Li X., He Y.	Genome-wide Association Analyses Reveal the Genetic Basis of stigma exsertion in Rice.	Mol Plant	10(4)	634-644	2017		
44341	28265566	Trinh H., Nguyen K.T., Nguyen L.V., Pham H.Q., Huong C.T., Xuan T.D., Anh H., Caccamo M., Ayling S., Diep N.T., Nguyen C., Trung K.H., Khanh T.D.	Whole-Genome Characteristics and Polymorphic Analysis of Vietnamese Rice Landraces as a Comprehensive Information Resource for Marker-Assisted Selection.	International Journal of Genomics	2017	9272363	2017		
44342	28072536	Butcher D., Bernad S., Derrien V., Sebban P., Miksovska J.	Role of Ionic Strength and pH in Modulating Thermodynamic Profiles Associated with CO Escape from Rice Nonsymbiotic Hemoglobin 1.	J Phys Chem B	121(2)	351-364	2017		
44343	28293245	Ashraf U., Kanu A.S., Deng Q., Mo Z., Pan S., Tian H., Tang X.	Lead (Pb) Toxicity; Physio-Biochemical Mechanisms, Grain Yield, Quality, and Pb Distribution Proportions in Scented Rice.	Front Plant Sci	8	259	2017		
44344	28282452	Lee I.H., Jung Y.J., Cho Y.G., Nou I.S., Huq M.A., Nogoy F.M., Kang K.K.	SP-LL-37, human antimicrobial peptide, enhances disease resistance in transgenic rice.	PLoS ONE	12(3)	e0172936	2017		
44345	28074873	Shen J., Lv B., Luo L., He J., Mao C., Xi D., Ming F.	The NAC-type transcription factor OsNAC2 regulates ABA-dependent genes and abiotic stress tolerance in rice.	Sci Rep	7	40641	2017		
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44349	28179912	Ye T., Hao Y.H., Yu L., Shi H., Reiter R.J., Feng Y.Q.	A Simple, Rapid Method for Determination of Melatonin in Plant Tissues by UPLC Coupled with High Resolution Orbitrap Mass Spectrometry.	Front Plant Sci	8	64	2017		
44350	28199904	Essemine J., Xiao Y., Qu M., Mi H., Zhu X.G.	Cyclic electron flow may provide some protection against PSII photoinhibition in rice (Oryza sativa L.) leaves under heat stress.	J. Plant Physiol.	211	138-146	2017		
44351	28079051	Wang D., Huang J., Nie L., Wang F., Ling X., Cui K., Li Y., Peng S.	Integrated crop management practices for maximizing grain yield of double-season rice crop.	Sci Rep	7	38982	2017		
44352	28094773	Liu J., Xu H., Jiang Y., Zhang K., Hu Y., Zeng Z.	Methane Emissions and Microbial Communities as Influenced by Dual Cropping of Azolla along with Early Rice.	Sci Rep	7	40635	2017		
44353	28054942	Qiu J., Hou Y., Wang Y., Li Z., Zhao J., Tong X., Lin H., Wei X., Ao H., Zhang J.	A Comprehensive Proteomic Survey of ABA-Induced Protein Phosphorylation in Rice (Oryza sativa L.).	Int J Mol Sci	18(1)		2017	C3H12,DOS,BZIP72,D1,BZIP12,_,SAPK6,SAPK9,SMG1,BZR1,FLO2,SERK1,WRKY87,EIN2	OsC3H12, OsZFP12, ZFP12,OsDOS, OsC3H2, C3H2, OsTZF2, OsCCCH-Zn-4,OsbZIP72, OsAREB2, OsABF4, ABF4, Osbzip72, OsABI5, ABI5,d1, GPA1, GA1, OsGA1, RGA1, dwf1, XA7, RGA, D1/RGA1, D89, TGW5, OsTGW5, SRG5, OsSRG5,OsbZIP12, OsABF1, ABF1, OsOSE2, OSE2, OsbZIP12/OsABF1,OsSDIR1, SDIR1,  OsRING198, RING198,OsSAPK6, OSRK1, OsSnRK2.6, SnRK2.6,OsSAPK9, OsSnRK2.9, SnRK2.9,OsMKK4, MKK4, OsMKK4/SMG1, OsMAPKK4, MAPKK4, OsMEK4, MEK4, OsSMG1, SMG1/OsMEK6, OsMEK6, MEK6, OsSTS, STS,OsBZR1, Os BZR1, OsBES1-6, BES1-6,flo2, flo3(t), Osflo2, Osflo3(t), Osflo-2, flo-2, FLO2-1, FLO2-2,OsSERK1, OsSERK2, OsBiSERK1, SERK2, BiSERK1, OsSerk2, OsBAK1-2,OsWRKY87, OsSUSIBA2-like,OsEIN2, MHZ7/OsEIN2, OsEIN2/MHZ7, MHZ7 
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44355	28355306	Zhang F., Wu Z.C., Wang M.M., Zhang F., Dingkuhn M., Xu J.L., Zhou Y.L., Li Z.K.	Genome-wide association analysis identifies resistance loci for bacterial blight in a diverse collection of indica rice germplasm.	PLoS ONE	12(3)	e0174598	2017		
44356	28179911	Sun R., Ye R., Gao L., Zhang L., Wang R., Mao T., Zheng Y., Li D., Lin Y.	Characterization and Ectopic Expression of CoWRI1, an AP2/EREBP Domain-Containing Transcription Factor from Coconut (Cocos nucifera L.) Endosperm, Changes the Seeds Oil Content in Transgenic Arabidopsis thaliana and Rice (Oryza sativa L.).	Front Plant Sci	8	63	2017		
44357	28280498	Jain P., Singh P.K., Kapoor R., Khanna A., Solanke A.U., Krishnan S.G., Singh A.K., Sharma V., Sharma T.R.	Understanding Host-Pathogen Interactions with Expression Profiling of NILs Carrying Rice-Blast Resistance Pi9 Gene.	Front Plant Sci	8	93	2017		
44358	28250586	Khan F., Upreti P., Singh R., Shukla P.K., Shirke P.A.	Physiological performance of two contrasting rice varieties under water stress.	Physiol Mol Biol Plants	23(1)	85-97	2017		
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44360	28365721	Yue J., Zhang D., Ban R., Ma X., Chen D., Li G., Liu J., Wisniewski M., Droby S., Liu Y.	PCPPI: a comprehensive database for the prediction of Penicillium-Crop protein-protein interactions.	Database (Oxford)	2017(1)		2017		
44361	28126846	Ji R., Ye W., Chen H., Zeng J., Li H., Yu H., Li J., Lou Y.	A Salivary endo-beta-1,4-glucanase Acts as an Effector That Enables the Brown Planthopper to Feed on Rice.	Plant Physiol.	173(3)	1920-1932	2017		
44362	28220138	Zhou J., Li X., Chen Y., Dai C.C.	De novo Transcriptome Assembly of Phomopsis liquidambari Provides Insights into Genes Associated with Different Lifestyles in Rice (Oryza sativa L.).	Front Plant Sci	8	121	2017		
44363	28144699	Pidon H., Ghesqui?re A., Ch?ron S., Issaka S., H?brard E., Sabot F., Kolade O., Silu? D., Albar L.	Fine mapping of RYMV3: a new resistance gene to Rice yellow mottle virus from Oryza glaberrima.	Theor. Appl. Genet.	130(4)	807-818	2017		
44364	28487708	Richa K., Tiwari I.M., Devanna B.N., Botella J.R., Sharma V., Sharma T.R.	Novel chitinase gene LOC_Os11g47510 from Indica Rice Tetep Provides Enhanced Resistance against Sheath Blight Pathogen Rhizoctonia solani in Rice.	Front Plant Sci	8	596	2017		
44365	28422981	Sun Z., Yin X., Ding J., Yu D., Hu M., Sun X., Tan Y., Sheng X., Liu L., Mo Y., Ouyang N., Jiang B., Yuan G., Duan M., Yuan D., Fang J.	QTL analysis and dissection of panicle components in rice using advanced backcross populations derived from Oryza Sativa cultivars HR1128 and 'Nipponbare'.	PLoS ONE	12(4)	e0175692	2017		
44366	27709567	Xu R., Wei P., Yang J.	Use of CRISPR/Cas Genome Editing Technology for Targeted Mutagenesis in Rice.	Methods Mol. Biol.	1498	33-40	2017		
44367	28487722	Zhang M., Lu Q., Wu W., Niu X., Wang C., Feng Y., Xu Q., Wang S., Yuan X., Yu H., Wang Y., Wei X.	Association Mapping Reveals Novel Genetic Loci Contributing to Flooding Tolerance during Germination in Indica Rice.	Front Plant Sci	8	678	2017		
44368	28045983	Wang J., Wang Y., Gao C., Jiang L., Guo D.	PPero, a Computational Model for Plant PTS1 Type Peroxisomal Protein Prediction.	PLoS ONE	12(1)	e0168912	2017		
44369	28250588	Nguyen V.C., Nguyen V.K., Singh C.H., Devi G.S., Reddy V.S., Leelavathi S.	Fast recovery of transgenic submergence tolerant rice cultivars of North-East India by early co-cultivation of Agrobacterium with pre-cultured callus.	Physiol Mol Biol Plants	23(1)	115-123	2017		
44370	28152098	Lafarge T., Bueno C., Frouin J., Jacquin L., Courtois B., Ahmadi N.	Genome-wide association analysis for heat tolerance at flowering detected a large set of genes involved in adaptation to thermal and other stresses.	PLoS ONE	12(2)	e0171254	2017		
44371	28101092	Kondo M., Hirai H., Furukawa T., Yoshida Y., Suzuki A., Kawaguchi T., Che F.S.	Frameshift Mutation Confers Function as Virulence Factor to Leucine-Rich Repeat Protein from Acidovorax avenae.	Front Plant Sci	7	1988	2016		
44372	28103264	Gu D., Zhen F., Hannaway D.B., Zhu Y., Liu L., Cao W., Tang L.	Quantitative Classification of Rice (Oryza sativa L.) root length and Diameter Using Image Analysis.	PLoS ONE	12(1)	e0169968	2017		
44373	28149257	Bui T.G.T., Hoa N.T.L., Yen J.Y., Schafleitner R.	PCR-based assays for validation of single nucleotide polymorphism markers in rice and mungbean.	Hereditas	154	3	2017		
44374	28106116	Hong Y., Yang Y., Zhang H., Huang L., Li D., Song F.	Overexpression of MoSM1, encoding for an immunity-inducing protein from Magnaporthe oryzae, in rice confers broad-spectrum resistance against fungal and bacterial diseases.	Sci Rep	7	41037	2017		
44375	28094280	Mishra S., Mattusch J., Wennrich R.	Accumulation and transformation of inorganic and organic arsenic in rice and role of thiol-complexation to restrict their translocation to shoot.	Sci Rep	7	40522	2017		
44376	28400748	Peng J., Wegner C.E., Liesack W.	Short-Term Exposure of Paddy Soil Microbial Communities to Salt Stress Triggers Different Transcriptional Responses of Key Taxonomic Groups.	Front Microbiol	8	400	2017		
44377	28255554	Akbar S., Tahir M., Wang M.B., Liu Q.	Expression Analysis of Hairpin RNA Carrying Sugarcane mosaic virus (SCMV) Derived Sequences and Transgenic Resistance Development in a Model Rice Plant.	Biomed Res Int	2017	1646140	2017		
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44379	28424710	Xie Q., Liu X., Zhang Y., Tang J., Yin D., Fan B., Zhu L., Han L., Song G., Li D.	Identification and Characterization of microRNA319a and Its Putative Target Gene, PvPCF5, in the Bioenergy Grass Switchgrass (Panicum virgatum).	Front Plant Sci	8	396	2017		
44380	28119704	Yue L., Twell D., Kuang Y., Liao J., Zhou X.	Transcriptome Analysis of Hamelia patens (Rubiaceae) Anthers Reveals Candidate Genes for Tapetum and pollen Wall Development.	Front Plant Sci	7	1991	2016		
44381	28117452	Zheng Y., Zhang H., Deng X., Liu J., Chen H.	The relationship between vacuolation and initiation of PCD in rice (Oryza sativa) aleurone cells.	Sci Rep	7	41245	2017		
44382	28069706	Catoni M., Griffiths J., Becker C., Zabet N.R., Bayon C., Dapp M., Lieberman-Lazarovich M., Weigel D., Paszkowski J.	DNA sequence properties that predict susceptibility to epiallelic switching.	EMBO J.	36(5)	617-628	2017		
44383	28223994	Boonyaves K., Wu T.Y., Gruissem W., Bhullar N.K.	Enhanced Grain Iron Levels in Rice Expressing an IRON-REGULATED METAL TRANSPORTER, NICOTIANAMINE SYNTHASE, and FERRITIN Gene Cassette.	Front Plant Sci	8	130	2017		
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44385	28071676	Guo H., Mendrikahy J.N., Xie L., Deng J., Lu Z., Wu J., Li X., Shahid M.Q., Liu X.	Transcriptome analysis of neo-tetraploid rice reveals specific differential gene expressions associated with fertility and heterosis.	Sci Rep	7	40139	2017		
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44389	28070613	Pham V.T., Rediers H., Ghequire M.G., Nguyen H.H., De Mot R., Vanderleyden J., Spaepen S.	The plant growth-promoting effect of the nitrogen-fixing endophyte Pseudomonas stutzeri A15.	Arch. Microbiol.	199(3)	513-517	2017		
44390	28054169	Chang H., Huang H.E., Cheng C.F., Ho M.H., Ger M.J.	Constitutive expression of a plant ferredoxin-like protein (PFLP) enhances capacity of photosynthetic carbon assimilation in rice (Oryza sativa).	Transgenic Res.	26(2)	279-289	2017		
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44392	28228768	Zaid I.U., Tang W., Liu E., Khan S.U., Wang H., Mawuli E.W., Hong D.	Genome-Wide Single-Nucleotide Polymorphisms in CMS and Restorer Lines Discovered by Genotyping Using Sequencing and Association with Marker-Combining Ability for 12 Yield-Related Traits in Oryza sativa L. subsp. Japonica.	Front Plant Sci	8	143	2017		
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44397	28484477	Brikis C.J., Zarei A., Trobacher C.P., DeEll J.R., Akama K., Mullen R.T., Bozzo G.G., Shelp B.J.	Ancient Plant Glyoxylate/Succinic Semialdehyde Reductases: GLYR1s Are Cytosolic, Whereas GLYR2s Are Localized to Both Mitochondria and Plastids.	Front Plant Sci	8	601	2017		
44398	28220436	Yamaguchi K., Kawasaki T.	Chitin-Triggered MAPK Activation and ROS Generation in Rice Suspension-Cultured Cells.	Methods Mol. Biol.	1578	309-316	2017		
44399	28081161	Wang C., Lai D.Y., Sardans J., Wang W., Zeng C., Pe?uelas J.	Factors Related with CH4 and N2O Emissions from a Paddy Field: Clues for Management implications.	PLoS ONE	12(1)	e0169254	2017		
44400	28373862	Li S., Song L., Gao X., Jin Y., Liu S., Shen Q., Zou J.	Microbial Abundances Predict Methane and Nitrous Oxide Fluxes from a Windrow Composting System.	Front Microbiol	8	409	2017		
44401	28100213	Wang J., Peng Y., Xiao K., Wei B., Hu J., Wang Z., Song Q., Zhou X.	Transcriptomic response of wolf spider, Pardosa pseudoannulata, to transgenic rice expressing Bacillus thuringiensis Cry1Ab protein.	BMC Biotechnol.	17(1)	7	2017		
44402	28059483	Tang D., Peng Y., Lin J., Du C., Yang Y., Wang D., Liu C., Yan L., Zhao X., Li X., Chen L., Liu X.	Ectopic expression of fungal EcGDH improves nitrogen assimilation and grain yield in rice.	J Integr Plant Biol			2017		
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44409	28444595	Mohanta T.K., Bae H.	Cloning and characterization of auxin efflux carrier genes EcPIN1a and EcPIN1b from finger millet Eleusine coracana L.	3 Biotech	7(1)	51	2017		
44410	28439066	Yang L., Han Y., Li P., Wen L., Hou M.	Silicon amendment to rice plants impairs sucking behaviors and population growth in the phloem feeder Nilaparvata lugens (Hemiptera: Delphacidae).	Sci Rep	7(1)	1101	2017		
44411	28429576	Zhang H., Xu H., Feng M., Zhu Y.	Suppression of OsMADS7 in rice endosperm stabilizes amylose content under high temperature stress.	Plant Biotechnol. J.			2017		
44412	28429297	Singh A., Carandang J., Gonzaga Z.J.C., Collard B.C.Y., Ismail A.M., Septiningsih E.M.	Identification of QTLs for yield and agronomic traits in rice under stagnant flooding conditions.	Rice (N Y)	10(1)	15	2017		
44413	28420613	Xiaobin H., Ran X., Penggen D., Haiyue Y., Yuehua L., Yunhai L.	Genetic analysis and identification of candidate genes for two spotted-leaf mutants (spl101 and spl102) in rice.	Yi Chuan	39(4)	346-353	2017		
44414	28447607	Shivaraj S.M., Deshmukh R.K., Rai R., B?langer R., Agrawal P.K., Dash P.K.	Genome-wide identification, characterization, and expression profile of aquaporin gene family in flax (Linum usitatissimum).	Sci Rep	7	46137	2017		
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44416	28338637	Liu X., Ferguson R.B., Zheng H., Cao Q., Tian Y., Cao W., Zhu Y.	Using an Active-Optical Sensor to Develop an Optimal NDVI Dynamic Model for High-Yield Rice Production (Yangtze, China).	Sensors (Basel)	17(4)		2017		
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44418	28480321	Battu L., Reddy M.M., Goud B.S., Ulaganathan K., Ulaganathan K.	Assembly of genomic reads of elite indica rice cultivar onto 2101 reference bacterial genomes for identification of co-sequenced endophytic bacteria.	Data Brief	12	305-312	2017		
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44421	28346447	Okada R., Nemoto Y., Endo-Higashi N., Izawa T.	Synthetic control of flowering in rice independent of the cultivation environment.	Nat Plants	3	17039	2017		
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44435	15599031	Jian-Jun Wang, Xu-Dong Zhu, Lin-You Wang, Li-Hua Zhang, Qing-Zhong Xue, Zu-Hua He	[Physiological and genetic analysis of lesion resembling disease mutants (lrd) of Oryza sativa L].	Zhi Wu Sheng Li Yu Fen Zi Sheng Wu Xue Xue Bao	30(3)	331-8	2004	LRD43	RLS1, OsRLS1, OsLRD43, NOE2, OsNOE2
44436	0	DAI Gao-Meng ZHU Xiao-Yan, LI Yun-Feng, LING Ying-Hua, ZHAO Fang-Ming, YANG Zheng-Lin, HE Guang-Hua	Genetic Analysis and Fine Mapping of a lesion mimic Mutant spl31 in Rice	Acta Agronomica Sinica	39(7)	1223-120	2013	SPL31	
44437	0	Jorge Luis Fuentes, Fernando Jos? Correa-Victoria, Escobar F., Prado G., Aricapa G., Myriam Cristina Duque, Tohme J.	Identification of microsatellite markers linked to the blast resistance gene Pi-1(t) in rice	Euphytica	160(3)	295-304	2008	PI1	Pi1, Pi-1, Pi1-5C, Pi1-6C
44438	16105854	Luo H., Song F., Zheng Z.	Overexpression in transgenic tobacco reveals different roles for the rice homeodomain gene OsBIHD1 in biotic and abiotic stress responses.	J. Exp. Bot.	56(420)	2673-82	2005	BIHD1	OsBIHD1
44439	0	Sun Y., Zhang Y.J., Cao G.C., Gu S.H., Wu K.M., Gao X.W., Guo Y.Y.	Rice gene expression profiles responding to larval feeding of the striped stem borer at the 1st to 2nd instar stage	Insect Science	18	273-281	2011	_	OsTPS31, TPS31, OsSTPS, TPS46, tps46, OsTPS46, SSBis039, OsTPS10, TPS10, TPS7, OsTPS7
44440	20565634	M A Campbell, P C Ronald	Characterization of four rice mutants with alterations in the defence response pathway.	Mol. Plant Pathol.	6(1)	11-21	2005	PR10A,PR1B,XA21	PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1, OsPR1a, PR1a,Xa21*, Xa21, OsXA21
44454	19766710	Sang-Gyu Kim, Lee S., Pil Joon Seo, Soon-Kap Kim, Jeong-Kook Kim, Chung-Mo Park	Genome-scale screening and molecular characterization of membrane-bound transcription factors in Arabidopsis and rice.	Genomics	95(1)	56-65	2010	NAC70,NAC42,NAC40,NAC8,NAC37	ONAC070, ONAC70, OsNTL6, NTL6, OsNAC78,OsNAC42, ONAC042, ONAC42, ONAC051, ONAC51, OsNTL4, NTL4,ONAC040, ONAC40, ONAC054, ONAC54, OsNTL5, NTL5, UCIP17, OsUCIP17,OsNAC8, ONAC074, ONAC74, NAC74, OsNAC8/ONAC074, OsNTL3, NTL3,ONAC037, ONAC37, OsNTL2, NTL2
44455	28578018	Qin R., Zeng D., Liang R., Yang C., Akhter D., Alamin M., Jin X., Shi C.	Rice gene SDL/RNRS1, encoding the small subunit of ribonucleotide reductase, is required for chlorophyll synthesis and plant growth development.	Gene	627	351-362	2017	RNRS2,ST1	,st1(ws1), ws1, st1, OsST1, RNRS1, OsRNRS1, rnrs1, RNRS, SDL/RNRS1, SDL, OsSDL, NSL2, OsNSL2
44456	28487409	Zhou S., Jiang W., Long F., Cheng S., Yang W., Zhao Y., Zhou D.X.	Rice Homeodomain Protein WOX11 Recruits a Histone Acetyltransferase Complex to Establish Programs of Cell Proliferation of crown root Meristem.	Plant Cell	29(5)	1088-1104	2017	PIN9,WOX11,CEL9A,BGLU33,BC6,_,_,HAG702,BGLU5,ALDP,CSLF6	OsPIN9,OsWOX11, Os WOX11, OsWOX12A,OsCel9A, OsGH9C3, GH9C3, OsGLU5, Cel9A ,Os9bglu33, Os9Bglu33, 9bglu33, OsBGLU33,Bc6*, Bc6, OsCesA9, CESA9, OsCESA9, OS_CESA09, OsCesA 9, CesA9, BC88, SDBC1, OsSDBC1,OsHXA701, HXA701, ADA2 ,EXPA23, OsEXPA23,OsHAG702, GCN5, OsGCN5, OsBrd10, Brd10,Os1bglu5, Os1Bglu5, 1bglu5,Aldo, OsALDO, ALDO, FBAase, OsFBAase, ALDOA, OsALDOA ,OsCslF6, OsCSLF6, OsCLD3, CLD3
44457	28559349	Zuo X., Lu H., Jiang L., Zhang J., Yang X., Huan X., He K., Wang C., Wu N.	Dating rice remains through phytolith carbon-14 study reveals domestication at the beginning of the Holocene.	Proc. Natl. Acad. Sci. U.S.A.	114(25)	6486-6491	2017		
44458	28461499	Zhang H., Zhang J., Yan J., Gou F., Mao Y., Tang G., Botella J.R., Zhu J.K.	Short tandem target mimic rice lines uncover functions of miRNAs in regulating important agronomic traits.	Proc. Natl. Acad. Sci. U.S.A.	114(20)	5277-5282	2017	MIR398A,SODCC2	miR398a, osa-miR398a, osa-MIR398a,Cu/Zn-SOD, Cu/Zn- SOD, OsCu-ZnSOD2, Cu-ZnSOD2, OsSODB, OsSOD3, SodCc2, Os SodCc2, sodB, OsSodB, RSODB, OssodCc1, OsCSD1.1, CSD1.1, OsCDS1, OsSOD3-CU/Zn, SOD3-CU/Zn, CuZnSOD2, Cu/ZnSOD2, OsCu/ZnSOD2, OsCSD1, CSD1, CuZnSOD1, OsCuZnSOD2, OsCSD4, CSD4, OsCSD3, CSD3, Cu/Zn-SOD3
44459	28465411	Xiong Q., Ma B., Lu X., Huang Y.H., He S.J., Yang C., Yin C.C., Zhao H., Zhou Y., Zhang W.K., Wang W.S., Li Z.K., Chen S.Y., Zhang J.S.	Ethylene-Inhibited Jasmonic Acid Biosynthesis Promotes Mesocotyl/Coleoptile Elongation of Etiolated Rice Seedlings.	Plant Cell	29(5)	1053-1072	2017	EXPB6,EXPA4,EXPB11,_,_,_,EG1,_,_,AOC,EXPL1,EXPB4,EIN2,EIL2,EXPA2	OsEXPB6, osaEXPb1.8, EXPb1.8,OsEXP4 (Os-EXP4), OsEXPA4, OsEXP4, Os-EXP4, OsaEXPa1.22,OsEXPB11, osaEXPb1.20,OsJIP-1, JIP-1, OsJIP1, JIP1,OsJMT, JMT ,OsJIP-3, JIP-3, OsJIP3, JIP3,eg1, GY1, OsEG1, OsGY1,OsJIP-2, JIP-2, OsJIP2, JIP2,OsJIP-4, JIP-4, OsJIP4, JIP4,OsAOC, AOC1, OsAOC1, HB, CPM2, OsAOC4, AOC4,OsEXPLA1, EXPLA1, OsRIP3, RIP3, Os-EXPL1, OsEXPL1,OsEXPB4, OsaEXPb1.7, EXPb1.7,OsEIN2, MHZ7/OsEIN2, OsEIN2/MHZ7, MHZ7 ,OsEIL2,OsEXP2, OsEXP2(Os-EXP2), Os-EXP2, EXPA2, OsEXPA2, OsaEXPa1.23, RiExB, RiExC, Os-EXPA2
44460	28514448	Xu G., Yuan M., Ai C., Liu L., Zhuang E., Karapetyan S., Wang S., Dong X.	uORF-mediated translation allows engineered plant disease resistance without fitness costs.	Nature	545(7655)	491-494	2017	HSFB1	HSfB1, OsHsfB1, OsHsf-23, HSF23, OsHsf23, OsHSF23, TBF1 
44461	28575747	Suriyasak C., Harano K., Tanamachi K., Matsuo K., Tamada A., Iwaya-Inoue M., Ishibashi Y.	Reactive oxygen species induced by heat stress during grain filling of rice (Oryza sativa L.) are involved in occurrence of grain chalkiness.	J. Plant Physiol.	216	52-57	2017		
44462	28716414	Lu M., Wang Z., Fu S., Yang G., Shi M., Lu Y., Wang X., Xia J.	Functional characterization of the SbNrat1 gene in sorghum.	Plant Sci.	262	18-23	2017		
44463	28527335	Kim S., Lee S.B., Han C.S., Lim M.N., Lee S.E., Yoon I.S., Hwang Y.S.	Dissection of cis-regulatory element architecture of the rice oleosin gene promoters to assess abscisic acid responsiveness in suspension-cultured rice cells.	J. Plant Physiol.	215	20-29	2017		
44464	28495893	Xu Y., Sechet J., Wu Y., Fu Y., Zhu L., Li J., Zhang Y., Gineau E., Gaertner C., Zhou J., Fan X., Liu Y., Zhou L., Mouille G., Lin X.	Rice Sucrose Partitioning Mediated by a Putative Pectin Methyltransferase and Homogalacturonan Methylesterification.	Plant Physiol.	174(3)	1595-1608	2017	TSD2 	OsTSD2, OsQUA2, QUA2 
44465	28527337	Park S.I., Kim Y.S., Kim J.J., Mok J.E., Kim Y.H., Park H.M., Kim I.S., Yoon H.S.	Improved stress tolerance and productivity in transgenic rice plants constitutively expressing the Oryza sativa glutathione synthetase OsGS under paddy field conditions.	J. Plant Physiol.	215	39-47	2017		
44466	28531235	Zeng F., Biligetu B., Coulman B., Schellenberg M.P., Fu Y.B.	RNA-Seq analysis of gene expression for floral development in crested wheatgrass (Agropyron cristatum L.).	PLoS ONE	12(5)	e0177417	2017		
44467	28589142	Cui H., Wu Q., Zhu B.	Specific-Locus Amplified Fragment Sequencing Reveals Spontaneous Single-Nucleotide Mutations in Rice OsMsh6 Mutants.	Biomed Res Int	2017	4816973	2017	MSH6	OsMsh6, Msh6, OsMSH6
44468	28500268	Mao C., Lu S., Lv B., Zhang B., Shen J., He J., Luo L., Xi D., Chen X., Ming F.	A Rice NAC Transcription Factor Promotes leaf senescence via ABA Biosynthesis.	Plant Physiol.	174(3)	1747-1763	2017	SWEET5,NCED1,PSE1,WRKY90,TIL1,NYC3,PHYB,ABA1,NYC1,NOL,TDC1,CZOGT1,SPL28,RCCR2,REP1,NAC5,ICL,TDC2,SGR,ABA8OX1	OsSWEET5,OSNCED1, OsNCED-1, OsNCED3, OsNced3, NCED3, OsNCED9, NCED9,OsPSE1, OsPLL1, PLL1,OsWRKY90,NAC2, OsNAC2, ONAC004, ONAC4, ONAC034, ONAC34, ONAC058, ONAC58, OMTN2, Ostil1, OsNAC2/ONAC004, OsORE1.2, DLN113, OsDLN113,nyc3, OsNYC3, PPH,phyB, PHYB1, OsPHYB, OsphyB, OsYHB, YHB, OsPHYB/OsYHB,OsABA1, Zep1, OsAba1, Aba2, OsAba2, OsZep1, Zep, OsZep, Aba1, OsABA2, Osaba1, OsZEP-1, OsZEP, OSZEP1, ZEP1, ZEP,nyc1, OsNYC1,nol, NOL1, OsNOL, OsNOL1,OsTDC, TDC, TDC2, OsTDC1, OsTDC4,OscZOGT1, cZOGT1,OsSPL28, PSL50, OsPSL50, AP1M1, OsAP1M1,OsRCCR2, OsRCCR1, RCCR1,REP-1, OsREP-1, OsREP1, OsSAG12-1, SAG12-1, OsEnS-21,OsNAC5, NAC71, ONAC071, ONAC009, ONAC9, ONAC020, ONAC20, OnNAC5*, OnNAC5, OsNAC5/ONAC009,OsEnS-107, EnS-107, OsI85, I85, OsICL, Osl85, l43, Osl43, OsL85,OsTDC2, OsTDC3,sgr(t), sgr, OsSGR, OsSgr, SGR1, OsSGR1,OsABA8OX1, CYP707A5, OsCYP707A5, ABA8ox1, OsABA8ox1, OsABA8'OH1, ABA8'OH1 
44469	28340032	Tang Z., Chen Y., Chen F., Ji Y., Zhao F.J.	OsPTR7 (OsNPF8.1), a Putative Peptide Transporter in Rice, is Involved in Dimethylarsenate Accumulation in Rice Grain.	Plant Cell Physiol.	58(5)	904-913	2017	PTR7	OsPTR7, OsNPF8.1, NPF8.1, OsNPF8.10, NPF8.10
44470	28204489	Tanaka J., Fukamizo T., Ohnuma T.	Enzymatic properties of a GH19 chitinase isolated from rice lacking a major loop structure involved in chitin binding.	Glycobiology	27(5)	477-485	2017	CHT8	Cht8, OsChia2a, Cht2, Rcht2, Chia2a, CHIT14, OsCHIT14, OsPR3
44471	28330558	Ahmed S., Ariyaratne M., Patel J., Howard A.E., Kalinoski A., Phuntumart V., Morris P.F.	Altered expression of polyamine transporters reveals a role for spermidine in the timing of flowering and other developmental response pathways.	Plant Sci.	258	146-155	2017	PUT3,PUT1	OsPUT3, OsPUT3.1, OsPAR1, OsLAT5 ,OsPUT1, PUT, OsLAT1 
44472	28611803	Wu L., Zhang W., Ding Y., Zhang J., Cambula E.D., Weng F., Liu Z., Ding C., Tang S., Chen L., Wang S., Li G.	Shading Contributes to the Reduction of Stem Mechanical Strength by Decreasing Cell Wall Synthesis in Japonica Rice (Oryza sativa L.).	Front Plant Sci	8	881	2017	BC7,GH2,_,CESA3,CCR18,CESA8,PAL1,ROMT9,CESA1,BC6,CESA7	OsCesA4, OsCESA4, CESA4, OS_CESA04, BC11, bc7t, Bc7(t), bc-7, OsCesA 4, CesA4, FC17/CESA4, FC17, OsFC17,gh2, CAD2, CAD, OsCAD2, OsGH2 ,OsOMT26, ROMT-15, ROMT15, COA20, OsCCoAOMT, CCoAOMT,OsCesA3, OsCESA3, OS_CESA03,OsCCR, CCR, OsCCR18,OsCesA8, OsCESA8, OS_CESA08, CesA8,OsPAL, Pal1*, Pal1, PAL, Pal_1, PalI, PAL2, OsPAL01, PAL01, OSPAL, CP-1, GP-1, OsPAL1, PAL3, OsPAL3,COMT, OsCOMT, ROMT-9, OsCOMT1, OsCAldOMT1, CAldOMT1, OsOMT, OsCOMT15, COMT15,OsCesA1, OsCesA-1, OsCESA1, OS_CESA01, CesA1,Bc6*, Bc6, OsCesA9, CESA9, OsCESA9, OS_CESA09, OsCesA 9, CesA9, BC88, SDBC1, OsSDBC1,OsCesA7, OsCESA7, OS_CESA07, OsCesA 7, CesA7
44473	28371895	Gao W., Lu L., Qiu W., Wang C., Shou H.	OsPAP26 Encodes a Major Purple Acid Phosphatase and Regulates Phosphate Remobilization in Rice.	Plant Cell Physiol.	58(5)	885-892	2017	PAP26	OsPAP26
44474	28620402	Li R.Q., Jiang M., Liu Y.H., Zheng Y.C., Huang J.Z., Wu J.M., Shu Q.Y.	The xantha Marker Trait Is Associated with Altered Tetrapyrrole Biosynthesis and Deregulated Transcription of PhANGs in Rice.	Front Plant Sci	8	901	2017	SE13,SE5,YLC2,FC2,SIG6,GUN4,SIG5,FC1	Se13, OsHY2, OsGUN3, GUN3, PS13,Se5, OsHO1, OsHO-1, OsHY1, HO-1, HO1, OsSE5, YGL2, YGL2/HO1,OsHO2, HO2, OsHO-2, HO-2,OsFC2, OsGUN6-2, GUN6-2 ,OsSIG6, OsSig6,OsGUN4,OsSIG5, OsSig5, Os Sig5,OsFC1, OsGUN6-1, GUN6-1
44475	28559550	Liang X., Chen X., Li C., Fan J., Guo Z.	Metabolic and transcriptional alternations for defense by interfering OsWRKY62 and OsWRKY76 transcriptions in rice.	Sci Rep	7(1)	2474	2017	HPL3,ICS1,AOS2,TPS29,WRKY62,AIM1,_,AOC,WRKY76	OsHPL3, CYP74B2, OsCYP74B2,OsICS1, OsICS, ICS,OsAOS2, CYP74A2, OsAOS, OsAOS1,OsTPS29, OsCAS, CAS, OsTPS3, TPS3, TPS33, OsTPS33,OsWRKY62, OsWRKY62.1, OsWRKY62.2, XB10, OsWRKY62-1, OsWRKY62-2,MFP, OsAIM, OsCHD, CHD,OsTPS31, TPS31, OsSTPS, TPS46, tps46, OsTPS46, SSBis039, OsTPS10, TPS10, TPS7, OsTPS7,OsAOC, AOC1, OsAOC1, HB, CPM2, OsAOC4, AOC4,OsWRKY76, OsWRKY76.1, OsWRKY76.2, OsWRKY76.3
44476	28502056	Feng H., Li B., Zhi Y., Chen J., Li R., Xia X., Xu G., Fan X.	Overexpression of the nitrate transporter, OsNRT2.3b, improves rice phosphorus uptake and translocation.	Plant Cell Rep.	36(8)	1287-1296	2017	PT1,PT2,HTNE,PHR2,PT8	OsPT1, PHT1-1, OsPht1;1, Pht1;1, OsPHT1;1, PHT1;1,OsPT2, PTH1-2, OsPht1;2, PHT1;2, OsPHT1;2,NRT2.3, OsNRT2.3, OsNRT2;1, OsNRT2.3a, OsNRT2.3b, OsNRT2;3a, OsNRT2.5 ,OsPHR2, Os-PHR2,OsPT8, PHT1-8, OsPht1;8, Pht1;8, PHT1;8, OsPHT1;8
44477	28505352	Chen Y., Sun S.K., Tang Z., Liu G., Moore K.L., Maathuis F.J.M., Miller A.J., McGrath S.P., Zhao F.J.	The Nodulin 26-like intrinsic membrane protein OsNIP3;2 is involved in arsenite uptake by lateral roots in rice.	J. Exp. Bot.	68(11)	3007-3016	2017	NIP3;2	OsNIP3;2, NIP3-2, OsNIP3.2, NIP3.2
44478	28472292	Bund? M., Coca M.	Calcium-dependent protein kinase OsCPK10 mediates both drought tolerance and blast disease resistance in rice plants.	J. Exp. Bot.	68(11)	2963-2975	2017	CDPK10,CATA	OsCDPK10, OsCPK10, CPK10,CATA1, Cat A1*, OSCAT-A, Cat2, CatA1, CAT-A, OsCatA, OsCAT, CAT, catA, OSCATA, OsCATc, OsCATA, OsCAT1A, CAT1, OsCAT1, OsCATC, OsCAT2
44479	28576844	Li G., Jain R., Chern M., Pham N.T., Martin J.A., Wei T., Schackwitz W.S., Lipzen A.M., Duong P.Q., Jones K.C., Jiang L., Ruan D., Bauer D., Peng Y., Barry K.W., Schmutz J., Ronald P.C.	The Sequences of 1504 Mutants in the Model Rice Variety Kitaake Facilitate Rapid Functional Genomic Studies.	Plant Cell	29(6)	1218-1231	2017		
44480	28177831	Yang X., Nong B., Xia X., Zhang Z., Zeng Y., Liu K., Deng G., Li D.	Rapid identification of a new gene influencing low amylose content in rice landraces (Oryza sativa L.) using genome-wide association study with specific-locus amplified fragment sequencing.	Genome	60(6)	465-472	2017		
44481	28607067	Zhou F., Wang C.Y., Gutensohn M., Jiang L., Zhang P., Zhang D., Dudareva N., Lu S.	A recruiting protein of geranylgeranyl diphosphate synthase controls metabolic flux toward chlorophyll biosynthesis in rice.	Proc. Natl. Acad. Sci. U.S.A.	114(26)	6866-6871	2017	FGL,GPPS,GA3OX1,GGPPS1,GGPPS2,YGL1,LYL1,_	fgl(fl), fl, fgl, OsFGL, OsPorB, PoPA, PORA, porA, OsPORA, PORB, OsPORB,OsGPS, GPS, OsGPPS,OsGA3ox1, GA3ox1, OsGA3OX1,OsGGPPS1,OsGGPPS2, OsGRP, GRP, OsGGPPS1, GGPPS1,OsYGL1, CHLG, Ygl1, CS, OsCHLG,OsChl P, CHL P, ChlP, OsGGRI, GGRI, OsGGR, GGR, OsGGR1, GGR1, OsGGR1/LYL1/OsChl P,OsLIL3, LIL3
44482	28626465	Zhong S., Mahmood K., Bi Y.M., Rothstein S.J., Ranathunge K.	Altered Expression of OsNLA1 Modulates Pi Accumulation in Rice (Oryza sativa L.) Plants.	Front Plant Sci	8	928	2017	NLA1,LTN1	OsRFPHC-13, OsNLA, NLA, OsNLA1, OsNLA1.1, OsNLA1.2, OsNLA1.3,  OsRING269, RING269,LTN1, OsPHO2, PHO2.1, PHO2.2, PHO2, OsUBC35, UBC35
44483	28702040	Wang T., Li C., Wu Z., Jia Y., Wang H., Sun S., Mao C., Wang X.	Abscisic Acid Regulates Auxin Homeostasis in Rice Root Tips to Promote root hair Elongation.	Front Plant Sci	8	1121	2017	RAU1,SAPK10,YUCCA1,LRA1,PIN10A,YUCCA4,PP2C53,_	OsLAX1, OsRAU1, OsAUX1, LAX1, AUX1,OsSAPK10, OsSnRK2.10, SnRK2.10,OsYUCCA1, OsYUC1, YUC1,OsPIN2, PIN2, OsLRA1, WAR1, OsWAR1,PIN3A, OsPIN3a, OsPIN3t, OsPIN10a, OsPIN3,OsYUCCA4, OsYUC4, YUC4, YUCCA6, OsYUCCA6,OsPP2C53, OsPP81, OsABIL2, ABIL2,OsAMI2, AMI2, OsAMI1, AMI1
44484	28659944	Lou D., Wang H., Liang G., Yu D.	OsSAPK2 Confers Abscisic Acid Sensitivity and Tolerance to Drought Stress in Rice.	Front Plant Sci	8	993	2017	P5CS,APX2,SLAC7,ABI5,LEA3-1,RAB16A,SOD4,SLAC1,NOE1,BZIP23,SAPK2,RAB16B,SODCC1	OsP5CS, P5CS1, OsP5CS1, OsALDH18B1, ALDH18B1, OsP5CS-1, P5CS-1,OsAPX2, OsAPx02, APXb, OsAPx2, OSAPX2, APx2, cAPX, OsAPX1, APX1,OsSLAC7,OsABI5, OsbZIP10, OsABF1, OREB1, OsABI5-1, OsABI5-2, OsOREB1, OREB1 ,OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3, OsLEA3A, LEA3A,Rab16A, rab21, RAB21, OsRab21, OsRAB21, OsRAB-21, OsRab16A, OsLEA29, rab16A, OsRAB16A,OsSOD4, OsCSD4, OsCu/Zn-SOD1, Cu/Zn-SOD1, OsCSD2, CSD2, OsSOD4-Cu/Zn, SOD4-Cu/Zn, Cu/ZnSOD3, CuZnSOD3, sodCp, OssodCp, OsCu/ZnSOD3, CuZnSOD2, OsSOD1,OsSLAC1, OsSLAH1, SLAH1,CATC, OsCat, OsCatC, OsCATC, OsNOE1, noe1, catC, OsCATC, CAT3, OsCAT3, LLM9428, OsLLM9428,OsbZIP23, OsAREB1, OsABF2, Osbzip23, OsAREB2, OsZIP23, ZIP23,OsSAPK2, OsSnRK2.2, SnRK2.2,rab21, OsLEA28, OsRAB16D, OsRab16d, Rab16d, OsRAB16b, XERO1, OsXERO1, OsRD22, RD22,sodCc1, SODCC.1, sodA, RSODA, OsSOD1, OsCSD2, OsSodA, SodCc2, OsSODA1, SODCc1-Cu/Zn, OsCu/Zn-SOD2, Cu/Zn-SOD2, OsCSD1.2, CSD1.2, OsSODCc1-Cu/Zn, SODCc1-Cu/Zn, CuZnSOD1, Cu/ZnSOD1, OsCu/ZnSOD1, OsCSD4, CDS4, CuZnSOD4, OsCuZnSOD1, OsCSD1, CSD1, OsSOD2
44485	28647924	Gho Y.S., Park S.A., Kim S.R., Chandran A.K.N., An G., Jung K.H.	Comparative Expression Analysis of Rice and Arabidopsis Peroxiredoxin Genes Suggests Conserved or Diversified Roles Between the Two Species and Leads to the Identification of Tandemly Duplicated Rice Peroxiredoxin Genes Differentially Expressed in Seeds.	Rice (N Y)	10(1)	30	2017	EPSPS,SLG,TRXH,2CYSPRXB,PRXIIE1,PRXQ,HSP82A,CDPK30,PRXIIC,PRXIIF,S5A,_,PRXIIE2,PRXIIE3,1CYSPRXB,1CYSPRXA,TRXH4	EPSPs, OsEPSPS,slg, Rurm1, Urm1, OsSUMO7, SUMO7,trxh, Trx-H, OsTRXh1, TRXh1, OsTrxh1, Os1, OsTrx23, Trx23, RPP13-1,Os2-Cys PrxB, 2-Cys PrxB,OsPrxII E1, PrxII E1, OsPrxIIE1, PrxIIE1,OsPrx Q, Prx Q, OsPrxQ, PrxQ,OsHSP82A, hsp82A, HSP90, OsHSP90, OsHSP81, HSP81,OsCDPK30, OsCPK30, CPK30,OsPrxII C, PrxII C, OsPrxIIC, PrxIIC,OsPrxII F, PrxII F, OsPrxIIF, PrxIIF,OsS5a, S5a, OsRpn10, Rpn10, OsvWA9, vWA9,BAS1, OsTPX, Os2-Cys PrxA, 2-Cys PrxA, Os2-CysPrxA, 2-CysPrxA, 2CYSPRXA, OsPRX2, PRX2,Pre IIE2, OsPrxII E2, PrxII E2, OsPrxIIE2, PrxIIE2,OsPrxII E3, PrxII E3, OsPrxIIE3, PrxIIE3,Os1-Cys Prx B, 1-Cys Prx B, Os1-CysPrxB, 1-CysPrxB,Os1-CysPrxA, 1-CysPrxA, OsPER1, PER1,OsTRXh4, OsTrx10, Trx10, Os3, OsTrxh3
44486	28574161	Huang P., Yoshida H., Yano K., Kinoshita S., Kawai K., Koketsu E., Hattori M., Takehara S., Huang J., Hirano K., Ordonio R.L., Matsuoka M., Ueguchi-Tanaka M.	OsIDD2, a zinc finger and INDETERMINATE DOMAIN protein, regulates secondary cell wall formation.	J Integr Plant Biol			2017	BC6,GH2,CESA7,BC7,IDD2,RSUS5,CAD3	Bc6*, Bc6, OsCesA9, CESA9, OsCESA9, OS_CESA09, OsCesA 9, CesA9, BC88, SDBC1, OsSDBC1,gh2, CAD2, CAD, OsCAD2, OsGH2 ,OsCesA7, OsCESA7, OS_CESA07, OsCesA 7, CesA7,OsCesA4, OsCESA4, CESA4, OS_CESA04, BC11, bc7t, Bc7(t), bc-7, OsCesA 4, CesA4, FC17/CESA4, FC17, OsFC17,OsIDD2, ZOS1-04, OsZOS1-04,SUS5, SS5, OsScS5, RSs5, RSus5, OsSUS5,OsCAD3
44487	28637831	Pandey B.K., Mehra P., Verma L., Bhadouria J., Giri J.	OsHAD1, a Haloacid Dehalogenase-Like APase, Enhances Phosphate Accumulation.	Plant Physiol.	174(4)	2316-2332	2017	PT1,NDPK3,PT4,PT2,PT8,GNK2RLK8,PHR2,HAD1,PT6,PT10,_	OsPT1, PHT1-1, OsPht1;1, Pht1;1, OsPHT1;1, PHT1;1,OsNDPK3,OsPT4, PHT1-4, OsPht1;4, PHT1-2, PHT1;4, OsPHT1;4,OsPT2, PTH1-2, OsPht1;2, PHT1;2, OsPHT1;2,OsPT8, PHT1-8, OsPht1;8, Pht1;8, PHT1;8, OsPHT1;8,Gnk2RLK-8, OsGnk2RLK-8,OsPHR2, Os-PHR2,OsHAD1,OsPT6, PHT1-6, OsPht1;6, OsLPT6:1, OsLPT1, OsPT6:1, Pht1;6, LPT6:1, LPT1, PT6:1,OsPT10, PHT1-10, OsPht1;10,OsACP1, ACP1
44488	28626008	Nguyen T.H., Huang S., Meynard D., Chaine C., Michel R., Roelfsema M.R.G., Guiderdoni E., Sentenac H., V?ry AA.	A Dual Role for the OsK5.2 Ion Channel in Stomatal Movements and K(+) Loading into Xylem Sap.	Plant Physiol.	174(4)	2409-2418	2017	GORK ,SKOR 	OsGORK, OsK5.2, K5.2, KOR1, OsKOR1, OsSKOR, SKOR,OsSKOR, OsK5.1, K5.1
44489	28680425	Wang J., Shi H., Zhou L., Peng C., Liu D., Zhou X., Wu W., Yin J., Qin H., Ma W., He M., Li W., Wang J., Li S., Chen X.	OsBSK1-2, an Orthologous of AtBSK1, Is Involved in Rice Immunity.	Front Plant Sci	8	908	2017	MAS,RLCK98,RLCK304,RLCK173,RLCK308,PR10B,RLCK119	OsMAS, MAS1, OsMAS1, OsMAS/SDR110C-MS1, SDR110C-MS1, OsSDR110C-MS1, OsMS1, MS1,OsRLCK98, OsBSK1, BSK1, OsBSK1-1, BSK1-1,OsRLCK304, OsBSK1-2, BSK1-2, OsBSK1,OsRLCK173, OsBSK3, BSK3,OsRLCK308, OsBSK2, BSK2,RPR10b, PR-10b, PR10b, PBZ1, PBZ-1, OsPBZc, OsPR10b, BetV, OsBetV,OsRLCK119, OsBSK4, BSK4
44490	28631167	Andr?s-Border?a A., Andr?s F., Garcia-Molina A., Perea-Garc?a A., Domingo C., Puig S., Pe?arrubia L.	Copper and ectopic expression of the Arabidopsis transport protein COPT1 alter iron homeostasis in rice (Oryza sativa L.).	Plant Mol. Biol.			2017	MT1F,SODCC1,CCH,COPT7,FSD1.1 ,SODB,FER2,_,NAS2,HRZ1,COPT1,IRO2,SOD4,HRZ2,SODCC2,_,NAS1,NAAT1,MTI4B	OsMT1f, OsMT1c, MT1f, MT1c, MT1Lb, OsMT1Lb ,sodCc1, SODCC.1, sodA, RSODA, OsSOD1, OsCSD2, OsSodA, SodCc2, OsSODA1, SODCc1-Cu/Zn, OsCu/Zn-SOD2, Cu/Zn-SOD2, OsCSD1.2, CSD1.2, OsSODCc1-Cu/Zn, SODCc1-Cu/Zn, CuZnSOD1, Cu/ZnSOD1, OsCu/ZnSOD1, OsCSD4, CDS4, CuZnSOD4, OsCuZnSOD1, OsCSD1, CSD1, OsSOD2,OsATX1, OsCCH, OsaCCH, ATX1, OsHMP14, HMP14,OsCOPT7,OsFSD1.1, OsSOD-Fe, SOD-Fe, FeSOD1, OsFSD2, FSD2,SodB, Fe-SOD, Fe- SOD, OsFe-SOD, Fe+-SOD, OsFe+-SOD, OsFe-SODa, OsFe-SODb, OsFeSODb, FeSODb, OsFSD1.2, FSD1.2, FeSOD2, OsFSD2, FSD2, OsFSD1, FSD1, ALM1, OsALM1,OsFER2, OsFer2,OsCDGSH, CDGSH,OsNAS2, OsNAS1,OsHRZ1,  OsRING149, RING149,OsCOPT1,OsIRO2, OsbHLH056, bHLH056, bHLH56, OsbHLH56,OsSOD4, OsCSD4, OsCu/Zn-SOD1, Cu/Zn-SOD1, OsCSD2, CSD2, OsSOD4-Cu/Zn, SOD4-Cu/Zn, Cu/ZnSOD3, CuZnSOD3, sodCp, OssodCp, OsCu/ZnSOD3, CuZnSOD2, OsSOD1,OsRFPH2-24, OsHRZ2, OsRING150, RING150, CLG1, OsCLG1,Cu/Zn-SOD, Cu/Zn- SOD, OsCu-ZnSOD2, Cu-ZnSOD2, OsSODB, OsSOD3, SodCc2, Os SodCc2, sodB, OsSodB, RSODB, OssodCc1, OsCSD1.1, CSD1.1, OsCDS1, OsSOD3-CU/Zn, SOD3-CU/Zn, CuZnSOD2, Cu/ZnSOD2, OsCu/ZnSOD2, OsCSD1, CSD1, CuZnSOD1, OsCuZnSOD2, OsCSD4, CSD4, OsCSD3, CSD3, Cu/Zn-SOD3,Fd1, OsFd1, ADI1, OsADI1,OsNAS1,OsNAAT1,OsMT1c, MT1c, OsMT-I-4b, MT-I-4b, OsMT1f, MT1f, MT1Lc, OsMT1Lc 
44491	28649255	Shi F., Dong Y., Zhang Y., Yang X., Qiu D.	Overexpression of the PeaT1 Elicitor Gene from Alternaria tenuissima Improves drought tolerance in Rice Plants via Interaction with a Myo-Inositol Oxygenase.	Front Plant Sci	8	970	2017	_,DST,EREBP1,ONAC2,CDPK9,TPKB,LP2,MIOX,SKIPA	OsAM1, AM1,OsDST, DLN102, OsDLN102, HST1, OsHST1,OsEREBP1, OsERF#070, OsERF070, OsERF70, ERF70, AP2/EREBP#084, AP2/EREBP84,SNAC1, snac1, OsNAC9, ONAC002, ONAC2, ONAC033, ONAC33, ONAC043, ONAC43, ONAC044, ONAC44, OsNAC19, NAC19, SNAC1/ONAC002, OsSNAC1, OsNAC9, OsNAC1,OsCDPK9, OsCPK9, CPK9,TPKb, OsTPKb,OsLP2,OsMIOX,OsSKIPa, OsSKIP, SKIP
44492	28474399	Guo H., Zhou H., Zhang J., Guan W., Xu S., Shen W., Xu G., Xie Y., Foyer C.H.	l-cysteine desulfhydrase-related H2 S production is involved in OsSE5-promoted ammonium tolerance in roots of Oryza sativa.	Plant Cell Environ.	40(9)	1777-1790	2017	SE5	Se5, OsHO1, OsHO-1, OsHY1, HO-1, HO1, OsSE5, YGL2, YGL2/HO1
44493	28574641	Fan C., Li Y., Hu Z., Hu H., Wang G., Li A., Wang Y., Tu Y., Xia T., Peng L., Feng S.	Ectopic expression of a novel OsExtensin-like gene consistently enhances plant lodging resistance by regulating cell elongation and cell wall thickening in rice.	Plant Biotechnol. J.			2017	PEX1,COG2,_,_,BUI1,FH6,_,_,_,_,_,_,_,_,_,AP1,_,_,_,_,RLCK175,_,_,_,_,_,_,_	OsPEX1,OsCOG2,,,BUI1, FH5, FH5/BUI1, RMD, OsRMD, OsFH5, FH5/RMD ,OsFH6,,,,,,,,OsFH13, FH13,,LECRK-S.7, OsLecRK-S.7, OsDAF1, DAF1, OsLecRK5, LecRK5, OsAP1,OsHyPRP17, HyPRP17,OsSTA174, RHS10, OsPERK6, PERK6,,,OsRLCK175, OsPERK5, PERK5,OsHyPRP6, HyPRP6,,SIP34,OsEXTL, EXTL ,RHS10,,
44494	28694815	Chang Y., Nguyen B.H., Xie Y., Xiao B., Tang N., Zhu W., Mou T., Xiong L.	Co-overexpression of the Constitutively Active Form of OsbZIP46 and ABA-Activated Protein Kinase SAPK6 Improves Drought and Temperature Stress Resistance in Rice.	Front Plant Sci	8	1102	2017	PP2C16,HSP50.2,_,RAB16B,BZIP46,SAPK6,HSP58.7,PDR22,RAB16A,RAD51B,PP2C42	OsPP2C16, OsPP26,OsHsp50.2, OsHSP50.2,,rab21, OsLEA28, OsRAB16D, OsRab16d, Rab16d, OsRAB16b, XERO1, OsXERO1, OsRD22, RD22,ABL1, bZIP46, OsABL1, OsbZIP46, OsAREB8, OsABF2, ABF2, OsABF3, ABF3, OsbZIP46CA1, OsZIP46, ZIP46, OsbZIP46/OsABF2,OsSAPK6, OSRK1, OsSnRK2.6, SnRK2.6,OsHsp58.7, OsHSP58.7, OsISC25, ISC25,OsABCG49, OsPDR22, OsABCG49_1, OsABCG49_2,Rab16A, rab21, RAB21, OsRab21, OsRAB21, OsRAB-21, OsRab16A, OsLEA29, rab16A, OsRAB16A,OsRAD51B, OsRad51B,OsPP2C42, OsPP67
44495	28585692	Huang X., Peng X., Sun M.X.	OsGCD1 is essential for rice fertility and required for embryo dorsal-ventral pattern formation and endosperm development.	New Phytol.	215(3)	1039-1058	2017	DSG1,SCR,OSH1,HAZ1,GE1,GCD1,AMY1A,PNH1	OsMAPK6, MAPK6, OsMPK6, OsSIPK, SIPK, OsMAPK1, MAPK1, MPK1, OsMPK1, MPK6, OsDSG1,OsSCR, OsSCR2, SCR2, OsGRAS-51, OsGRAS51, GRAS-51, GRAS51,OSKN1, Oskn1, OsKN1, OSH1/Oskn1, HB75,OsHAZ1, OsPHD28, PHD28,ge1, ge, CYP78A13, OsCYP78A13, GE, BG2, GES, OsGE/CYP78B5, CYP78B5, OsCYP78B5,OsGCD1,Amy1A/C*(RAmy1A/C), alpha Amy7, AMY1.1, Amy1A, RAmy1A/C, Amy1A/C*, Amy1, Amy1A_C, OsAmy1A, alphaAmy7-C, RAmy1A, AmyI-1, OsAmyI-1, OsRamy1A,OsPNH1
44496	28631168	Chen H.C., Hsieh-Feng V., Liao P.C., Cheng W.H., Liu L.Y., Yang Y.W., Lai M.H., Chang M.C.	The function of OsbHLH068 is partially redundant with its homolog, AtbHLH112, in the regulation of the salt stress response but has opposite functions to control flowering in Arabidopsis.	Plant Mol. Biol.	94(4-5)	531-548	2017	_,BHLH31,_,BHLH68,ICE2,_,PIL13,BHLH61,PTF1,PIL11,_,_,_	OsbHLH110,OsbHLH031, bHLH031, bHLH31, BIM2, OsBIM2,OsbHLH035, bHLH035, OsbHLH35, bHLH35, bHLH107,OsbHLH068, bHLH068, bHLH68, OsbHLH68,OsbHLH001, bHLH001, OsbHLH1, bHLH1, OsICE2,OsbHLH092,OsPIL1, OsPIL13, OsbHLH152, bHLH152, PIF7, OsPIF7, OsPIF4, PIF4, OsPIF1,OsbHLH061, OsbHLH61, bHLH061, bHLH61,OsPTF1, OsbHLH096, bHLH96,OsPIL11, OsbHLH102, bHLH102, PIF4, OsPIF4,OsbHLH064,OsbHLH065, OsbHLH65,OsbHLH024
44497	28676446	Yang H., Song J., Yue L., Mo X., Song J., Mo B.	Identification and expression profiling of Oryza sativa nucleotidyl transferase protein (NTP) genes under various stress conditions.	Gene			2017	NTP3,NTP1,NTP10,NTP7,NTP12,NTP9,NTP8,NTP11,NTP13,NTP4,NTP6,NTP2,NTP5	OsNTP3,OsNTP1,OsNTP10,OsNTP7,OsNTP12,OsNTP9,OsNTP8,OsNTP11,OsNTP13,OsNTP4,OsNTP6,OsNTP2,OsNTP5
44498	28696221	Hu Q., Li Y., Wang H., Shen Y., Zhang C., Du G., Tang D., Cheng Z.	Meiotic Chromosome Association 1 Interacts with TOP3alpha and Regulates Meiotic Recombination in Rice.	Plant Cell	29(7)	1697-1708	2017	_,MSH5,MEICA1,_,HEI10	MSH7,OsMSH5,,TOP3, TOP3alpha,HEI10A, HEI10B, OsHEI10,  OsRING434, RING434
44499	28700950	Ahmed M.M.S., Ji W., Wang M., Bian S., Xu M., Wang W., Zhang J., Xu Z., Yu M., Liu Q., Zhang C., Zhang H., Tang S., Gu M., Yu H.	Transcriptional changes of rice in response to rice black-streaked dwarf virus.	Gene			2017	ABA8OX3,WAK32,CDPK19,YGL1,YGL10,C3H24,DLN231,CKX4,RCCR1,ABA1,SCS1,TIFY10A	OsABA8OX3, OsABA8ox3, CYP707A7, OsCYP707A7, OsAba-ox3, OsABA8ox3, OsABA8'ox3, ABA8'ox3, OsABAX3, ABAX3, OsABA8'OH3, ABA8'OH3,OsWAK32,OsCDPK19, OsCPK19, OsCDPK2, CPK2, CDPK2,OsYGL1, CHLG, Ygl1, CS, OsCHLG,CAO, OsCAO, CAO1, OsCAO1, Oslls1, Lls1, DVR, PGL,OsC3H24, OsTZF3, TZF3, OsCCCH-Zn-8, CCCH-Zn-8,R2R3-MYB, OsDLN231, OsMYB108, MYB108, OsMYB31, MYB31, Os2R_MYB86, Os2R_MYB86, 2R_MYB86 ,OsCKX4, ckx4, OsSCRM, OsSCRM2, SCRM, SCRM2,OsRCCR1, OsRCCR, RCCR,OsABA1, Zep1, OsAba1, Aba2, OsAba2, OsZep1, Zep, OsZep, Aba1, OsABA2, Osaba1, OsZEP-1, OsZEP, OSZEP1, ZEP1, ZEP,OsSCS1,OsJAZ5, JAZ5, JAZ6, OsJAZ6, OsTIFY10A
44500	28698160	Qin J., Tang Z., Ma X., Meng Y.	Investigating the regulatory roles of the microRNAs and the Argonaute 1-enriched small RNAs in plant metabolism.	Gene			2017	S13,PFK1,SRF3,AAO2,GINT2,STRL21,_,_,RDR2,WAK55,BSR1,SERL2,_,STN7,AGO1C,_,_,_,_,_,MAK5,ATPS,DRD1,DCL1,SSI,SODCC2	CSB, OsCHR745, CHR745, OlCHR,OsPFK01, PFK01, OsPFK1,OsSRF3,OsAAO2, L-APX, RIP5, OsRIP5,OsGINT2,OsSTRL21, OsSSL16, SSL16,,,OsRDR2,OsWAK55,OsRLCK278, RLCK278, PTK15, OsPTK15,OsSERL2, SERK1, OsBAK1-7, BAK1-7,OsWee1, Wee1 ,OsSTN7,OsAGO1c, OsAGO1, AGO1, AGO1c,,,,,SPL26, OsSPL26, OsSpl26,OsMAK5,OsATPS, OsaATPS, PAPSS,OsDRD1, CHR736, OsCHR736,Dcl1, OsDCL1, osDCL1, Os-DCL1, OsDCL1a, DCL1a,OsSSI, SSS 1, SSS1, SS1, OsSS1, SSSI, OsSSSI,Cu/Zn-SOD, Cu/Zn- SOD, OsCu-ZnSOD2, Cu-ZnSOD2, OsSODB, OsSOD3, SodCc2, Os SodCc2, sodB, OsSodB, RSODB, OssodCc1, OsCSD1.1, CSD1.1, OsCDS1, OsSOD3-CU/Zn, SOD3-CU/Zn, CuZnSOD2, Cu/ZnSOD2, OsCu/ZnSOD2, OsCSD1, CSD1, CuZnSOD1, OsCuZnSOD2, OsCSD4, CSD4, OsCSD3, CSD3, Cu/Zn-SOD3
44501	28737678	Esch L., Schaffrath U.	An Update on Jacalin-Like Lectins and Their Role in Plant Defense.	Int J Mol Sci	18(7)		2017	YCHF1,JAC1	OsYchF1, YchF1, OsPM8ATP ,OsJAC1, DIR54, OsDIR54, OsjDIR54, OsJRL29, JRL29
44502	28716105	Wang Q., Zang Y., Zhou X., Xiao W.	Characterization of four rice Uev1 genes required for Lys63-linked polyubiquitination and distinct functions.	BMC Plant Biol.	17(1)	126	2017	CROC1,UEV1A,UBC13,UEV1D,UEV1C	OsCROC-1, CROC-1, OsCROC1, OsUEV1B, UEV1B,OsUEV1A,OsUbc13, Ubc13, OsUBC47, UBC47,OsUEV1D,MMS2, OsUEV1C
44503	28798768	Yu Y., Li Q.F., Zhang J.P., Zhang F., Zhou Y.F., Feng Y.Z., Chen Y.Q., Zhang Y.C.	laccase-13 Regulates Seed Setting Rate by Affecting Hydrogen Peroxide Dynamics and Mitochondrial Integrity in Rice.	Front Plant Sci	8	1324	2017	MIR397A,LAC15	miR397a, osa-miR397a, osa-MIR397a, OsmiR397a,OsLAC, LAC, OsLAC15, OsLAC13, LAC13 
44504	28715430	Jiang S., Sun S., Bai L., Ding G., Wang T., Xia T., Jiang H., Zhang X., Zhang F.	Resequencing and variation identification of whole genome of the japonica rice variety "Longdao24" with high yield.	PLoS ONE	12(7)	e0181037	2017	WX1,GW8,SSIIC,EP3,ALK,BBX7,APO1,MADS56,GN1A,SSIIIB,HD3B,_,SBE3,EHD3,SSIVA	wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx,SPL16, OsSPL16, SLP1, OsSLP1, qGW8, OsGW8,OsSSIIc, SSII-1, SSII1 ,EP3/LP, LP, OsLP, OsFbox076, OsFbox76, Os_F0106, OsEP3,  OsFBK5, FBK5,alk, SSII-3, OsSSIIa, OsSSII-3, SSIIa, SSS2A, OsSSIIaChr6, SS2a,OsN, OsBBX7, OsCCT08, OsCCT8, OsDTH2, CCT08, CCT8, DTH2,apo1(t), apo1, SCM2, SCM2/APO1, OsFbox321, Os_F0393, Pbl6/APO1, Pbl6, OsPbl6,  OsFBX202, FBX202,OsMADS56, FDRMADS8, RMADS214,Gn1a, OsCKX2, CKX2, ckx2, Gn1a/OsCKX2, Os CKX2, CKX2/Gn1a,OsSSIIIb. SSIII-1, SSIIIa,Hd17, EF7, Ef7, OsELF3-1, ELF3-1, OsELF3, ELF3, ELF3_chr.6, OsELF3.1, ELF3.1, OsELF3a, ELF3a,OsLF, LF, OsbHLH119,SBEIII*, SBEIII, Sbe3, RBE3, QEIIa, QEIIA, BEIIb, BEIIB, SBEIIb, OsBEIIb, sbe3, SBE III, OsSBEIIb, SBEIIb,Ehd3, OsPHD36, PHD36,OsSSIVa, SSIV-1, OsSSIV-1
44505	28621830	Hayashi S., Kuramata M., Abe T., Takagi H., Ozawa K., Ishikawa S.	phytochelatin synthase OsPCS1 plays a crucial role in reducing arsenic levels in rice grains.	Plant J.	91(5)	840-848	2017	PCS1,MRP1,PCS5	OsPCS1, OsPCS2, PCS2, OsPCS15, PCS15,OsABCC1, ABCC1, OsABCC1-1, OsABCC1-2, OsMRP1,OsPCS, PCS, OsPCS2, PCS2, OsPCS2a, PCS2a, OsPCS2b, PCS2b, OsPCS1, PCS1, OsPCS1a, OsPCS1b, OsPCS1c, OsPCS1full, OsPCS5
44506	28706198	Hu Q., Lin C., Guan Y., Sheteiwy M.S., Hu W., Hu J.	Inhibitory effect of eugenol on seed germination and pre-harvest sprouting of hybrid rice (Oryza sativa L.).	Sci Rep	7(1)	5295	2017	NCED2,ABA8OX2	OsNCED2, OsNced2, OsCCD4b, CCD4b, OsCCD4c, CCD4c,OsABA8OX2, OsABA8ox2, CYP707A6, OsCYP707A6, OsAba-ox2, OsABA8ox2, OsABA8OH2, ABA8OH2, ABA8'-OH2, OsABA8'ox2, ABA8'ox2, OsABAX2, ABAX2, OsABA8'OH2, ABA8'OH2
44507	28756251	Xu D., Cao H., Fang W., Pan J., Chen J., Zhang J., Shen W.	Linking hydrogen-enhanced rice aluminum tolerance with the reestablishment of GA/ABA balance and miRNA-modulated gene expression: A case study on germination.	Ecotoxicol. Environ. Saf.	145	303-312	2017		
44508	28769958	Jang S., Li H.Y.	Oryza sativa BRASSINOSTEROID UPREGULATED1 LIKE1 Induces the Expression of a Gene Encoding a Small Leucine-Rich-Repeat Protein to Positively Regulate Lamina Inclination and grain size.in Rice.	Front Plant Sci	8	1253	2017	EXPA2,WRKY24,_,ERF96,XTH2,ILI5,EXPA3,EXPA1,EXPA4,XTH9	OsEXP2, OsEXP2(Os-EXP2), Os-EXP2, EXPA2, OsEXPA2, OsaEXPa1.23, RiExB, RiExC, Os-EXPA2,OsWRKY24,OsBDG1, BDG1 ,DERF12, OsDERF12, OsERF#096, OsERF096, OsERF96, AP2/EREBP#116, AP2/EREBP116, OsAP2, OsAP2.1, OsAP2.2, OsERF36,OsXTH2, XTR1, OsXTR1,ILI5, OsILI5, PGL2, OsPGL2, Os170, OsBUL1, BUL1, ILI5/PGL2, OsbHLH170, bHLH170,OsEXP3 (Os-EXP3), EXPA3, OsEXP3, Os-EXP3, OsaEXPa1.18, RiExD, Os-EXPA3, OsEXPA3,OsEXP1, EXPA1, OsEXPA1, OsaEXPa1.16, RiExA,OsEXP4 (Os-EXP4), OsEXPA4, OsEXP4, Os-EXP4, OsaEXPa1.22,OsXTH9, OsXET9, XTH1, OsXTH1
44509	28751900	Kim E.H., Lee D.W., Lee K.R., Jung S.J., Jeon J.S., Kim H.U.	Conserved Function of Fibrillin5 in the Plastoquinone-9 Biosynthetic Pathway in Arabidopsis and Rice.	Front Plant Sci	8	1197	2017	SPS1,SPS2,FBN5,SPS3	OsSPS1,OsSPS2,OsFBN5,OsSPS3
44510	28761138	Zou T., Li S., Liu M., Wang T., Xiao Q., Chen D., Li Q., Liang Y., Zhu J., Liang Y., Deng Q., Wang S., Zheng A., Wang L., Li P.	An atypical strictosidine synthase, OsSTRL2, plays key roles in anther development and pollen wall formation in rice.	Sci Rep	7(1)	6863	2017	STRL2,STRL15,STRL3,TGW6,STRL5,STRL19,STRL10,STRL21,_,_,_,_,_,_,_,STRL8,STRL18,STRL14,STRL20,STRL12,STRL13	OsSTRL2, OsSSL1, SSL1,OsSTRL15, OsSSL11, SSL11,OsSTRL3, OsSSL2, SSL2,tgw6, OsSTRL7, STRL7, OsSSL4, SSL4,OsSTRL5, OsSSL3, SSL3,OsSTRL19, OsSSL14, SSL14,OsSTRL10, OsSSL6, SSL6,OsSTRL21, OsSSL16, SSL16,OsSTRL16, STRL16,OsSTRL9, STRL9,OsSTRL4, STRL4,OsSTRL11, STRL11,OsSTRL1, STRL1,OsSTRL17, STRL17,OsSTRL6, STRL6,OsSTRL8, OsSSL5, SSL5,OsSTRL18, OsSSL13, SSL13,OsSTRL14, OsSSL10, SSL10,OsSTRL20, OsSSL15, SSL15,OsSTRL12, OsSSL8, SSL8,OsSTRL13, OsSSL9, SSL9
44511	28690154	Yin X., Cui Y., Wang M., Xia X.	Overexpression of a novel MYB-related transcription factor, OsMYBR1, confers improved drought tolerance and decreased ABA sensitivity in rice.	Biochem. Biophys. Res. Commun.	490(4)	1355-1361	2017	P5CS,LEA3-1,_,PROT,RAB16A	OsP5CS, P5CS1, OsP5CS1, OsALDH18B1, ALDH18B1, OsP5CS-1, P5CS-1,OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3, OsLEA3A, LEA3A,LHY, LHY-like_chr.4, OsMYBR1, MYBR1, OsMYB1R35, MYB1R35,OsProT, ProT, OsProT2, ProT2,Rab16A, rab21, RAB21, OsRab21, OsRAB21, OsRAB-21, OsRab16A, OsLEA29, rab16A, OsRAB16A
44512	28700714	Liu W., Ghouri F., Yu H., Li X., Yu S., Shahid M.Q., Liu X.	Genome wide re-sequencing of newly developed Rice Lines from common wild rice (Oryza rufipogon Griff.) for the identification of NBS-LRR genes.	PLoS ONE	12(7)	e0180662	2017	CC1,_,HSP90	OsCc1, OsCc-1,,OsHsp90, rHSP90, OsHSP90, GRP94, OsGRP94
44513	28708858	Xu Y., Yang J., Wang Y., Wang J., Yu Y., Long Y., Wang Y., Zhang H., Ren Y., Chen J., Wang Y., Zhang X., Guo X., Wu F., Zhu S., Lin Q., Jiang L., Wu C., Wang H., Wan J.	OsCNGC13 promotes seed-setting rate by facilitating pollen tube growth in stylar tissues.	PLoS Genet.	13(7)	e1006906	2017	CNGC11	OsCNGC11, OsCNGC13, CNGC13, SSS1-D 
44514	28730411	Lee Y., Choi M.S., Lee G., Jang S., Yoon M.R., Kim B., Piao R., Woo M.O., Chin J.H., Koh H.J.	sugary endosperm is Modulated by Starch branching enzyme IIa in Rice (Oryza sativa L.).	Rice (N Y)	10(1)	33	2017	PHS8,SBE4	ISA1, OsISA1, ISA, OsISA, PHS8/ISA1, OsPHS8, ISA I, OsISA I, ISAI, OsISAI,RBE4, OsSBE4, BEIIa, QEIIb, BEIIA, OsBEIIa
44515	28708834	Zhang Y., Yu C., Lin J., Liu J., Liu B., Wang J., Huang A., Li H., Zhao T.	OsMPH1 regulates plant height and improves grain yield in rice.	PLoS ONE	12(7)	e0180825	2017	_,_,KAO,MFS2,_,_,_,_,XTH15,WAK45,MYB45,COMTL5,CAD6,RAU3	,,OsKAO, kao, CYP88A5, OSKAO, Os KAO, RPE1, KO1,OsMFS2, MOF1, OsMOF1,,,,,OsXTH15, DEFL9, OsDEFL9,OsWAK45, OsRLCK143, RLCK143,OsMPH1, MPH1, OsMYB45, DLN171, OsDLN171, OsMYB-R1, MYB-R1, CRPG17, OsCRPG17,OsCOMTL5, OsCOMT4, COMT4,OsCAD6,OsLAX3, OsRAU3, OsAUX2, LAX3, AUX2, OsAUX3, AUX3, ARF2
44516	28676963	Yang X., Chen L., He J., Yu W.	Knocking out of carotenoid catabolic genes in rice fails to boost carotenoid accumulation, but reveals a mutation in strigolactone biosynthesis.	Plant Cell Rep.			2017	D17	d17(t), dwf14, d17, htd1, OsCCD7, CCD7, D17/HTD1, HTD1, OsHTD1, OsD17
44517	28751317	Zhang H., Li Y., Yao X., Liang G., Yu D.	POSITIVE REGULATOR OF IRON HOMEOSTASIS1, OsPRI1, Facilitates Iron Homeostasis.	Plant Physiol.	175(1)	543-554	2017	IRO2,YSL2,NAS2,BHLH60,IRT2,IRT1,YSL15,BHLH63,NAS1	OsIRO2, OsbHLH056, bHLH056, bHLH56, OsbHLH56,OsYSL2, Os-YSL2, OsYs6 ,OsNAS2, OsNAS1,OsbHLH060, bHLH060, bHLH60, OsPRI1, PRI1, OsbHLH115, bHLH115,OsIRT2, OsIRT1, OsZIP15, ZIP15,OsIRT1, ZIP10, OsZIP10, OsZIP12, ZIP12,OsYSL15, OsYs7,OsIRO3, IRO3, OsbHLH063, bHLH063, bHLH63,OsNAS1
44518	28726715	Zhang R.X., Qin L.J., Zhao D.G.	Overexpression of the OsIMP Gene Increases the Accumulation of Inositol and Confers Enhanced cold tolerance in Tobacco through Modulation of the Antioxidant Enzymes' Activities.	Genes (Basel)	8(7)		2017	_	OsIMP-1, IMP-1, OsIMP, IMP
44519	28818372	Zhang Z., Zhang F., Cheng Z.J., Liu L.L., Lin Q.B., Wu F.Q., Zhang H., Wang J.L., Wang J., Guo X.P., Zhang X., Lei C.L., Zhao Z.C., Zhu S.S., Wan J.M.	Functional characterization of rice CW-domain containing zinc finger proteins involved in histone recognition.	Plant Sci.	263	168-176	2017	CWZF3,CWZF6,CWZF5,WG7	OsCW-ZF3, CW-ZF3,OsCW-ZF6, CW-ZF6,OsCW-ZF5, CW-ZF5,OsCW-ZF7, CW-ZF7, CWZF7, OsWG7, AKIP695, OsAKIP695
44520	28747699	Sun T., Li S., Ren H.	OsFH15, a class I formin, interacts with microfilaments and microtubules to regulate grain size via affecting cell expansion in rice.	Sci Rep	7(1)	6538	2017	_,PRF1,PRF2	OsFH15, FH15,OsPRF1,OsPRF2
44521	28554475	Wu W., Zheng X.M., Chen D., Zhang Y., Ma W., Zhang H., Sun L., Yang Z., Zhao C., Zhan X., Shen X., Yu P., Fu Y., Zhu S., Cao L., Cheng S.	OsCOL16, encoding a CONSTANS-like protein, represses flowering by up-regulating Ghd7 expression in rice.	Plant Sci.	260	60-69	2017	HD3A,BBX17,RAP1B,EF1,RAP1A,GHD7,RFT1	Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,OsBBX17, OsL, OsCCT20, CCT20, OsCOL16, COL16,MADS14, OsMADS14, FDRMADS6, RMADS211, AGL10,Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,OsMADS15, FDRMADS3, RMADS215, MADS15, DEP,Ghd2, Ghd7, OsGhd7, OsCCT26, OsCMF8, OsI, Ghd7/Hd4, Hd4, EH7-1/Hd4, Ghd7-0a, EH7-1, EH7/Ghd7, EH7, OsEH7, GLW7.1, OsGLW7.1,FT-L 3, OsFTL3, FTL3, FT-L3, RFT, OsRFT1
44522	28698641	Cai L., Cao Y., Xu Z., Ma W., Zakria M., Zou L., Cheng Z., Chen G.	A Transcription Activator-Like Effector Tal7 of Xanthomonas oryzae pv. oryzicola Activates rice gene Os09g29100 to Suppress Rice Immunity.	Sci Rep	7(1)	5089	2017	CYCD4;1,XA7,GATA25	CycD2;1, CYCD2-1, Orysa;CycD2;1, OsCYCD2;1, Orysa;CycD4;1, CycD4;1, CYCD4-1, Orysa;CYCD4;1, cycD, OsCYCD4;1,,Xa7,OsGATA25
44523	28775727	Park H.J., Lee A., Lee S.S., An D.J., Moon K.B., Ahn J.C., Kim H.S., Cho H.S.	Overexpression of Golgi Protein CYP21-4s Improves Crop Productivity in Potato and Rice by Increasing the Abundance of Mannosidic Glycoproteins.	Front Plant Sci	8	1250	2017	CYP21-4	OsCYP21-4, OsCYP-19, OsCYP21-2a, OsCYP21-2b, OsCYP21-2c
44524	28797946	Wytynck P., Roug? P., Van Damme EJM.	Genome-wide screening of Oryza sativa ssp. japonica and indica reveals a complex family of proteins with ribosome-inactivating protein domains.	Phytochemistry	143	87-97	2017	RIP11.2,RIP1.1	OsjRIP11.2, nuRIP, OsnuRIP,OsRIP1, RIP1, OsjRIP1.1
44525	28839043	Gao N., Martini J.W.R., Zhang Z., Yuan X., Zhang H., Simianer H., Li J.	Incorporating Gene Annotation into Genomic Prediction of Complex Phenotypes.	Genetics			2017		
44526	28813631	Cheng A., Ismail I., Osman M., Hashim H., Mohd Zainual NS.	Rapid and targeted introgression of fgr gene through marker-assisted backcrossing in rice (Oryza sativa L.).	Genome			2017		
44527	28847935	Zhang T., Li Y., Ma L., Sang X., Ling Y., Wang Y., Yu P., Zhuang H., Huang J., Wang N., Zhao F., Zhang C., Yang Z., Fang L., He G.	LATERAL FLORET 1 induced the three-florets spikelet in rice.	Proc. Natl. Acad. Sci. U.S.A.			2017	LF1,OSH1,RAP1A,MFO1	HOX10, Oshox10, OsHox10, OsHB1, HB1, OSHB1, LF1/OsHB1, OsLF1, OsHDZ9, OsHDZIP9, HDZ9, HDZIP9,OSKN1, Oskn1, OsKN1, OSH1/Oskn1, HB75,OsMADS15, FDRMADS3, RMADS215, MADS15, DEP,OsMADS6, MADS6, OsMFO1
44528	28839042	Mei W., Boatwright L., Feng G., Schnable J.C., Barbazuk W.B.	Evolutionarily Conserved Alternative Splicing?Across Monocots.	Genetics			2017		
44529	28824674	Fang Z., Bai G., Huang W., Wang Z., Wang X., Zhang M.	The Rice peptide transporter OsNPF7.3 Is Induced by Organic Nitrogen, and Contributes to Nitrogen Allocation and grain yield.	Front Plant Sci	8	1338	2017	PTR6	OsPTR6, OsNRT1;2, NRT1;2, OsNPF7.3, NPF7.3 
44530	28856519	Tang J., Zhang W., Wen K., Chen G., Sun J., Tian Y., Tang W., Yu J., An H., Wu T., Kong F., Terzaghi W., Wang C., Wan J.	OsPPR6, a pentatricopeptide repeat protein involved in editing and splicing chloroplast RNA, is required for chloroplast biogenesis in rice.	Plant Mol. Biol.			2017	YCF3,PPR6	ORF170, ycf3, IRF170, ycf3-1, ycf3-2,OsPPR6
44531	28857222	Yoshida Y., Miyamoto K., Yamane H., Nishizawa Y., Minami E., Nojiri H., Okada K.	OsTGAP1 is responsible for JA-inducible diterpenoid phytoalexin biosynthesis in rice roots with biological impacts on allelopathic interaction.	Physiol Plant			2017	DXS3,KS4,BZIP37,KS7	OsDXS, OsDXS3, dxs3, DXS2, OsDXS2,OsKS4, KS4, KSL4, OsKSL4, DTS2, OsDTS2, OsTPS16, TPS16, TPS8, OsTPS8,OsTGAP1, TGAP1, OsbZIP37,OsKS7, KS7, KSL7, OsKSL7, DTC1, OsDTC1, OsKS3, OsDTC1/OsKS7, OsTPS6, TPS6, TPS38, OsTPS38
44532	28699078	Auiyawong B., Narawongsanont R., Tantitadapitak C.	Characterization of AKR4C15, a Novel Member of Aldo-keto reductase, in Comparison with Other Rice AKR(s).	Protein J.	36(4)	257-269	2017	ARK1,ARK4,AKR4C15,AKR3,AKR2	OsARK1, OsAKR4-1, AKR4-1,OsARK4,OsAKR4C15, OsALR1, ALR1,OsAKR3, OsALR1, ALR1, OsAKR4-3, AKR4-3,OsAKR2, AKR4C14, OsAKR4-2, AKR4-2
44533	28846681	Ganie S.A., Pani D.R., Mondal T.K.	Genome-wide analysis of DUF221 domain-containing gene family in Oryza species and identification of its salinity stress-responsive members in rice.	PLoS ONE	12(8)	e0182469	2017	OSCA1.3,OSCA2.3,OSCA1.1,MIR818E,OSCA2.2,OSCA2.4,OSCA1.2,MIR818A,MIR818B,MIR818C,MIR6248,MIR1436,MIR818D,OSCA2.5,ERD4,OSCA1.4,OSCA2.1	OsSTA149, OsOSCA1.3, OsIOSCA1.3, OsDDP5, DDP5, OsDDP5.1,OsOSCA2.3, OsIOSCA2.3, OsDDP4, DDP4, OsDDP4.1,OsOSCA1.1, OsIOSCA1.1, OsDDP1, DDP1, OsDDP1.1, OsDDP1.2, OsDDP1.3, OsDDP1.4,miR818e, osa-miR818e, osa-MIR818e,OsOSCA2.2, OsIOSCA2.2, OsDDP3, DDP3, OsDDP3.1, OsDDP3.2,OsOSCA2.4, OsIOSCA2.4, OsDDP9, DDP9, OsDDP9.1,OsOSCA1.2, OsIOSCA1.2, OsDDP6, DDP6, OsDDP6.1, OsDDP6.2,miR818a, osa-miR818a, osa-MIR818a,miR818b, osa-miR818b, osa-MIR818b,miR818c, osa-miR818c, osa-MIR818c,miR6248, osa-miR6248, osa-MIR6248,miR1436, osa-miR1436, osa-MIR1436,miR818d, osa-miR818d, osa-MIR818d,OsEnS-22, OsOSCA2.5, OsIOSCA2.5, OsDDP2, DDP2, OsDDP2.1, OsDDP2.2, OsERD, ERD,OsOSCA3.1, OSCA3.1, OsIOSCA3.1, OsERD4, OsDDP7, DDP7, OsDDP7.1, OsDDP7.2,OsOSCA1.4 , OsIOSCA1.4, OsDDP8, DDP8, OsDDP8.1, OsDDP8.2,OsOSCA2.1, OsIOSCA2.1, OsDDP10, DDP10, OsDDP10.1
44534	28801565	Karmakar S., Molla K.A., Das K., Sarkar S.N., Datta S.K., Datta K.	Dual gene expression cassette is superior than single gene cassette for enhancing sheath blight tolerance in transgenic rice.	Sci Rep	7(1)	7900	2017	DSG1,NH1,PR10A,PR1B,PR5,CHT3,AOS2,CHT1	OsMAPK6, MAPK6, OsMPK6, OsSIPK, SIPK, OsMAPK1, MAPK1, MPK1, OsMPK1, MPK6, OsDSG1,OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2, DLN5, OsDLN5,  OsBTBA1, BTBA1,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1, OsPR1a, PR1a,OsPR5, Pir2, PR-5, PR5-1,Cht3*, Cht3, Cht-3, CH6, OsChia1c, CHI7, OsCHI11, CHI11, OsPR3, PR3,OsAOS2, CYP74A2, OsAOS, OsAOS1,Cht1*(Chi1), Ch16, Cht1, CHT-1, CH16, RC24, OsChia1a, OsChia1, Chi1, Cht1*, Chi-1, Cht-1, Cht1, RCC1, OsCht-1, PR3, OsPR3
44535	28827170	Han S., Min M.K., Lee S.Y., Lim C.W., Bhatnagar N., Lee Y., Shin D., Chung K.Y., Lee S.C., Kim B.G., Lee S.	Modulation of ABA signaling by altering VxGPhiL motif of PP2Cs in Oryza sativa.	Mol Plant			2017	PYL/RCAR3,PYL/RCAR9,PYL/RCAR10,PP2C50,PYL/RCAR5,SAPK10	OsPYL/RCAR3, PYL3, OsPYL3, OsPYL10, PYL10, OsRCAR1, RCAR1 ,OsPYL/RCAR9, PYL9, OsPYL9, OsPYL2, PYL2,OsPYL/RCAR10, PYL10, OsPYL10, OsPYL1, PYL1, R10, OsPYL/R10,OsPP2C50, OsPP78, OsABIL3, ABIL3,OsPYL/RCAR5, PYL5, OsPYL5, OsPYL11, PYL11,OsSAPK10, OsSnRK2.10, SnRK2.10
44536	28766720	Hwang S.G., Chapagain S., Han A.R., Park Y.C., Park H.M., Kim Y.H., Jang C.S.	Molecular characterization of rice arsenic-induced RING Finger E3 ligase 2 (OsAIR2) and its heterogeneous overexpression in Arabidopsis thalaiana.	Physiol Plant			2017	_,_,_,_,AIR2,_,KAT1	OsRFP,  OsRING229, RING229,OsRFP, OsMAR1, MAR1,  OsRING230, RING230,OsRFP, RLIM, OsRLIM,  OsRING399, RING399,,OsRFP, RFP, OsAIR2 ,  OsRING271, RING271,OsRFP ,  OsRING232, RING232,OsI57, I57, OsKAT1, OsACAA1, ACAA1
44537	28775143	Burman N., Bhatnagar A., Khurana J.P.	OsbZIP48, a HY5 transcription factor ortholog, exerts pleiotropic effects in light-regulated development.	Plant Physiol.			2017	BZIP18,GID2,ERF102,PIL13,EXPA6,EXPA2,GNP1,SLR1,GID1,TIL1,BZIP1,CPS2,BC12,EXPA1,EXPA4,SLRL1,BZIP48,KO4,GA2OX2	OsbZIP18,gid2, GF14e, OsGF14e, OsGID2, 14-3-3e,OsERF#102, OsERF102, AP2/EREBP#123, AP2/EREBP123, OsEATB, EATB,OsPIL1, OsPIL13, OsbHLH152, bHLH152, PIF7, OsPIF7, OsPIF4, PIF4, OsPIF1,OsEXPA6, OsEXP6, osaEXPa1.24,OsEXP2, OsEXP2(Os-EXP2), Os-EXP2, EXPA2, OsEXPA2, OsaEXPa1.23, RiExB, RiExC, Os-EXPA2,GA20OX1, OsGA20ox1, 20ox1, GA20ox-1, ga20ox1, Os20ox, C20OX2, OsGA20ox2, OsGA20ox-1, GA20ox1, OsGNP1,slr1-1, slr1, slr, GAI, OsGAI, OsSLR1, Os SLR1, OsRGA1, OsGRAS-18, OsGRAS-18, GRAS-18, GRAS18, SLR-1,gid1, OsGID1, Thl, Os GID1,NAC2, OsNAC2, ONAC004, ONAC4, ONAC034, ONAC34, ONAC058, ONAC58, OMTN2, Ostil1, OsNAC2/ONAC004, OsORE1.2, DLN113, OsDLN113,OsbZIP01, bZIP01, OsbZIP1, OsRE1, RE1,OsCPS2, cps2, OsCPS2ent, CYC2, OsCyc2, OsCYC2, OsCPSL1, cpsl1, OsCyc2/OsCPS2, OsTPS7, Os-CPS2, TPS13, OsTPS13,bc12, gdd, GDD1, BC12/GDD1, OsGDD1, OsBC12/GDD1, OsBC12, LGW, OsLGW,OsEXP1, EXPA1, OsEXPA1, OsaEXPa1.16, RiExA,OsEXP4 (Os-EXP4), OsEXPA4, OsEXP4, Os-EXP4, OsaEXPa1.22,OsSLRL1, OsGAI, OsSLRL, OsGRAS-1, OsGRAS1, GAI, SLRL, GRAS-1, GRAS1,OsbZIP48, OsHY5, HY5,OsKO4, OsKOL4, KOS1, CYP701A8, OsCYP701A8, OsKO2, CYP701A8/OsKOL4,OsGA2ox2, ga2ox 2, OsGA2ox-2
44538	28783252	Zhu X., Yu J., Shi J., Tohge T., Fernie A.R., Meir S., Aharoni A., Xu D., Zhang D., Liang W.	The polyketide synthase OsPKS2 is essential for pollen exine and Ubisch body patterning in rice.	J Integr Plant Biol			2017	CYP704B2,LAP6,PKS10,ACS9,CYP703A3,MS2,ABCG15	OsCYP704B2,OsPKS1, PKS1, YY2, OsPKS21, PKS21, OsLAP6/OsPKS1, OsLAP6, OsCHS22, CHS22,OsPKS10, OsPKS2, PKS2, OsCHS10, CHS10,OsACS9, 4CL4, OsACOS12, ACOS12 ,OsCYP703A3,OsMS2, OsDPW, DPW, DPW1, OsDPW1, OsFAR2, FAR2,OsABCG15, PDA, PDA1, OsABCG15/PDA1
44539	28816596	Bakshi A., Moin M., Datla R., Kirti P.B.	Expression Profiling of Development Related Genes in Rice Plants Ectopically Expressing AtTOR.	Plant Signal Behav		0	2017	MFO1,FON2,GL1,BZIP12,GAMYB,FST ,OSH15,FON1,LHS1	OsMADS6, MADS6, OsMFO1,fon2, OsFON2, FON4, OsFON4, FON2/FON4, TG1,gl1, NUDA/GL-1, NUDA/GL1, NUDA, GL-1, OsWOX3B, OsWOX2, OsWOX3, Os WOX3, WOX3B, WOX2, WOX3, LSY1, OsLSY1, DEP, OsDEP,OsbZIP12, OsABF1, ABF1, OsOSE2, OSE2, OsbZIP12/OsABF1,OsGAMYB, GAM1, OsGAMyb, Os-MYBGA, Os GAMYB, OsMYBGA, MYBGA, Os2R_MYB15, 2R_MYB15 ,OsMADS29, MADS29, OsFST,OSH15, OsH15, OSKN3, Oskn3, HOS3, D6, d6, OSH15/Oskn3, HB253, H15, OsKNOX3, KNOX3,OsFON1, fon1, OsRLCK219, RLCK219,OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO, OsLHS1, OsLG3b, LG3b, qLGY3, LGY3, DLN80, OsDLN80, OLR, OsOLR, GW3p6, OsGW3p6, OsMADS1GW3p6, MADS1GW3p6, qLGY3/OsLG3b/GW3p6
44540	28839256	Manimaran P., Venkata Reddy S., Moin M., Raghurami Reddy M., Yugandhar P., Mohanraj S.S., Balachandran S.M., Kirti P.B.	Activation-tagging in indica rice identifies a novel transcription factor subunit, NF-YC13 associated with salt tolerance.	Sci Rep	7(1)	9341	2017	BZIP23,NFYC13,NHX1,P5CS,NAC6,SOS1,LEA3-1,SALT	OsbZIP23, OsAREB1, OsABF2, Osbzip23, OsAREB2, OsZIP23, ZIP23,OsNF-YC13, NF-YC13 ,OsNHX1, OcNHX1, OgNHX1, OrNHX1, OpNHX1, ObNHX1,OsP5CS, P5CS1, OsP5CS1, OsALDH18B1, ALDH18B1, OsP5CS-1, P5CS-1,OsNAC6, ONAC048, NAC48, SNAC2, SNAC2/OsNAC6, OsNAC6/ONAC048, OsSNAC2, SNAC-2, OsSNAC-2, OsNAC2,OsSOS1, OsNHA1, NHA1, SOS1/NHX7, NHX7, OsNHX7,OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3, OsLEA3A, LEA3A,salT*(sal1), SalT1*, sal1, Sal1, SALT, ML, SalT, OsSalT, OsJRL, JRL, Osl43, OsL43, OsMBL1, MBL1, OsJRL01, JRL01, OsJRL1, JRL1
44541	28811563	Kim S.W., Lee S.K., Jeong H.J., An G., Jeon J.S., Jung K.H.	Crosstalk between diurnal rhythm and water stress reveals an altered primary carbon flux into soluble sugars in drought-treated rice leaves.	Sci Rep	7(1)	8214	2017	BZIP23	OsbZIP23, OsAREB1, OsABF2, Osbzip23, OsAREB2, OsZIP23, ZIP23
44542	28821952	Yu J., Zao W., He Q., Kim T.S., Park Y.J.	Genome-wide association study and gene set analysis for understanding candidate genes involved in salt tolerance at the rice seedling stage.	Mol. Genet. Genomics			2017	_,SWEET12,_,_,BZIP71,FYVE16,_,CYTME2,_,NAL1,_,_,WRKY3,MTK1,AGO3,CCX3,CHX15,BIF2,WAK128,PROT3,PP2A-1,_,_,ARF6B,GRX27,_,SWEET7C,ERF76,CDC48E,WAK126,_,SAPK10,_	,OsSWEET12,,  OsBTBP2, BTBP2,,OsbZIP71, DLN221, OsDLN221, DLN222, OsDLN222,OsFYVE16,,OscytME2, cytME2,,nal1, cul1, GPS, SPIKE, SPIKE/LSCHL4/NAL1/GPS, SPIKE/NAL1, LSCHL4, OsNAL1,OsDjC48, DjC48,OsRab5A2, Rab5A2,OsWRKY3 ,OsMTK, OsMTK1, MTK,OsAGO3,OsCCX3, OsNCX11, NCX11,OsCHX15,bif2, Osbif2, OsBIF2, OsPID, PID, OsAGC25, AGC25,OsWAK128,OsProT3, ProT3,OsPP2A-1, PP2A1, OsPP88,,,OsARF6b, OsARF25, ARF25,OsGRX27,eIF-5A-2,OsSWEET7c, SWEET7c,OsERF#076, OsERF076, OsERF76, AP2/EREBP#046, AP2/EREBP46, DLN126, OsDLN126,OsCDC48E, OsCDC48-2, CDC48-2,OsWAK126, OsRLCK374, RLCK374,OsCHB701, CHB701,OsSAPK10, OsSnRK2.10, SnRK2.10,OsGL1-8, GL1-8
44543	28776570	Wang S., Wu K., Qian Q., Liu Q., Li Q., Pan Y., Ye Y., Liu X., Wang J., Zhang J., Li S., Wu Y., Fu X.	Non-canonical regulation of SPL transcription factors by a human OTUB1-like deubiquitinase defines a new plant type rice associated with higher grain yield.	Cell Res.	27(9)	1142-1156	2017	WFP,WTG1,UBC13,DEP1	OsSPL14, SPL14, IPA1, WFP/IPA1, OsSPL14/WFP/IPA1, OsIPA1,  IPA1/OsSPL14,OTUB1, OsOTUB1, OsOTUB1.1, OsOTUB1.2, qNPT1, OsWTG1,OsUbc13, Ubc13, OsUBC47, UBC47,OsDEP1, EP, qPE9-1, DN1, DEP1/DN1/qPE9-1, qNGR9, qDEP1, RGG4/DEP1/DN1/qPE9-1/OsGGC3, RGG4, OsDN1, OsGGC3, GGC3
44544	28546542	Ishikawa S., Hayashi S., Abe T., Igura M., Kuramata M., Tanikawa H., Iino M., Saito T., Ono Y., Ishikawa T., Fujimura S., Goto A., Takagi H.	Low-cesium rice: mutation in OsSOS2 reduces radiocesium in rice grains.	Sci Rep	7(1)	2432	2017	SOS2,AKT1,HAK5,LCS,HKT1	CIPK24, OsCIPK24, OsSOS2, OsSnRK3.22, SnRK3.22,OsAKT1, Os-AKT1,OsHAK5, FCO13, OsFCO13,OsHAK1, HAK1,OsHKT1, OsHKT2;1, HKT2;1, Ni (Nipponbare)-OsHKT1, Po (Pokkali)-HKT1, OsHKT1;1, HKT1;1
44545	28540586	He W., Adachi S., Sage R.F., Ookawa T., Hirasawa T.	Leaf photosynthetic rate and mesophyll cell anatomy changes during ontogenesis in backcrossed indica?~?japonica rice inbred lines.	Photosyn. Res.			2017		
44546	28500410	Nisarga K.N., Vemanna R.S., Chandrashekar B.K., Rao H., Vennapusa A.R., Narasimaha A., Makarla U., Basavaiah M.R.	Erratum to: Aldo-ketoreductase 1 (AKR1) improves seed longevity in tobacco and rice by detoxifying reactive cytotoxic compounds generated during ageing.	Rice (N Y)	10(1)	19	2017		
44547	28512299	Niu L., Mannakkara A., Qiu L., Wang X., Hua H., Lei C., Jurat-Fuentes JL., Ma W.	Transgenic Bt rice lines producing Cry1Ac, Cry2Aa or Cry1Ca have no detrimental effects on Brown Planthopper and Pond Wolf Spider.	Sci Rep	7(1)	1940	2017		
44548	28542427	He J., Shao G., Wei X., Huang F., Sheng Z., Tang S., Hu P.	Fine mapping and candidate gene analysis of qTAC8, a major quantitative trait locus controlling tiller angle in rice (Oryza sativa L.).	PLoS ONE	12(5)	e0178177	2017	LPA1,PROG1,SPK,BHLH38,LA1	OsIDD14, LPA1, IDD14, OsLPA1, ZOS1-06, OsZOS1-06,OsPROG1, ZOS7-02, OsZOS7-02,Spk(t), Spk(t)*), Spk, OsTAC1, TAC1, qTAC9 ,OsbHLH038, bHLH038, OsbHLH38,OsLa1
44549	28672893	Fan M.J., Yeh P.H., Lin J.P., Huang A.C., Lien J.C., Lin H.Y., Chung J.G.	Anthocyanins from black rice (Oryza sativa) promote immune responses in leukemia through enhancing phagocytosis of macrophages in vivo.	Exp Ther Med	14(1)	59-64	2017		
44550	28481332	Wu W., Liu X., Wang M., Meyer R.S., Luo X., Ndjiondjop M.N., Tan L., Zhang J., Wu J., Cai H., Sun C., Wang X., Wing R.A., Zhu Z.	A single-nucleotide polymorphism causes smaller grain size and loss of seed shattering during African rice domestication.	Nat Plants	3	17064	2017	_	GL4, GL4/ObSH4, SH4
44551	28533193	Xie Y., Xu P., Huang J., Ma S., Xie X., Tao D., Chen L., Liu Y.G.	Interspecific Hybrid Sterility in Rice Is Mediated by?OgTPR1 at the S1 Locus Encoding a Peptidase-like Protein.	Mol Plant	10(8)	1137-1140	2017	S1,TP1,FBOX291	,OsTP1, S1TP, OgTPR1, S1TPR,OsFbox291, Os_F0516,  OsFBX185, FBX185
44552	28371825	Ma L., Zhang D., Miao Q., Yang J., Xuan Y., Hu Y.	Essential Role of sugar transporter OsSWEET11 During the Early Stage of Rice Grain Filling.	Plant Cell Physiol.	58(5)	863-873	2017		
44553	28464384	Jiang Y., van Groenigen KJ., Huang S., Hungate B.A., van Kessel C., Hu S., Zhang J., Wu L., Yan X., Wang L., Chen J., Hang X., Zhang Y., Horwath W.R., Ye R., Linquist B.A., Song Z., Zheng C., Deng A., Zhang W.	Higher yields and lower methane emissions with new rice cultivars.	Glob Chang Biol			2017		
44554	28368237	Mutiga S.K., Rotich F., Ganeshan V.D., Mwongera D.T., Mgonja E.M., Were V.M., Harvey J.W., Zhou B., Wasilwa L., Feng C., Ou?draogo I., Wang G.L., Mitchell T.K., Talbot N.J., Correll J.C.	Assessment of the Virulence Spectrum and Its Association with Genetic Diversity in Magnaporthe oryzae Populations from Sub-Saharan Africa.	Phytopathology	107(7)	852-863	2017		
44555	28466470	Le T.T.T., Williams B., Mundree S.G.	An osmotin from the resurrection plant Tripogon loliiformis (TlOsm) confers tolerance to multiple abiotic stresses in transgenic rice.	Physiol Plant			2017		
44556	28499068	Nakata M., Miyashita T., Kimura R., Nakata Y., Takagi H., Kuroda M., Yamaguchi T., Umemoto T., Yamakawa H.	MutMapPlus identified novel mutant alleles of a rice starch branching enzyme IIb gene for fine-tuning of cooked rice texture.	Plant Biotechnol. J.			2017		
44557	28500411	Hamaoka N., Yasui H., Yamagata Y., Inoue Y., Furuya N., Araki T., Ueno O., Yoshimura A.	A hairy-leaf gene, BLANKET LEAF, of wild Oryza nivara increases photosynthetic water use efficiency in rice.	Rice (N Y)	10(1)	20	2017	BKL	
44558	28830102	Jiang W., Zhou S., Zhang Q., Song H., Zhou D.X., Zhao Y.	Transcriptional regulatory network of WOX11 is involved in the control of crown root development, cytokinin signals, and redox in rice.	J. Exp. Bot.	68(11)	2787-2798	2017	WOX11,_,CATA,_,MADS47,_,FRDL1,DH1,PRX72,RAA1,RBLS2,ERF92,PT4,RBOHF,_	OsWOX11, Os WOX11, OsWOX12A,,CATA1, Cat A1*, OSCAT-A, Cat2, CatA1, CAT-A, OsCatA, OsCAT, CAT, catA, OSCATA, OsCATc, OsCATA, OsCAT1A, CAT1, OsCAT1, OsCATC, OsCAT2,prx130, OsPRX2,OsMADS47, OsMDP1, MDP, MDP1,OsbHLH020, bHLH020, bHLH20,OsFRDL1,OsDH1, OsLBD2-1, LBD2-1, OsLOB16, LOB16,prx72, OsPrx72,OsRAA1, OsFPFL1, FPFL1,ASR1, OsAsr1, OsASR3, ASR3, Asr3, OsRBLS2,OsERF#092, OsERF092, OsERF92, ERF922, OsERF922, AP2/EREBP#078, AP2/EREBP78,OsPT4, PHT1-4, OsPht1;4, PHT1-2, PHT1;4, OsPHT1;4,RbohF, rbohF, OsrbohF, Os rbohF, OsNox6, Nox6, OsrbohE, rbohE, OsRboh6, Rboh6,
44559	28555430	Ayd?n Akbudak M., Srivastava V.	Effect of gene order in DNA constructs on gene expression upon integration into plant genome.	3 Biotech	7(2)	94	2017		
44560	28469237	Du H., Yu Y., Ma Y., Gao Q., Cao Y., Chen Z., Ma B., Qi M., Li Y., Zhao X., Wang J., Liu K., Qin P., Yang X., Zhu L., Li S., Liang C.	Sequencing and de novo assembly of a near complete indica rice genome.	Nat Commun	8	15324	2017		
44561	28553299	Lin Q., Zhou Z., Luo W., Fang M., Li M., Li H.	Screening of Proximal and Interacting Proteins in Rice Protoplasts by Proximity-Dependent Biotinylation.	Front Plant Sci	8	749	2017	_,BZIP55,_,PRF2,BZIP77	,OsbZIP55, OsFD2,OsRab1B2, OsRas1,OsPRF2,OsbZIP77, OsFD1, FD1
44562	28548655	Nadal M., Sawers R., Naseem S., Bassin B., Kulicke C., Sharman A., An G., An K., Ahern K.R., Romag A., Brutnell T.P., Gutjahr C., Geldner N., Roux C., Martinoia E., Konopka J.B., Paszkowski U.	An N-acetylglucosamine transporter required for arbuscular mycorrhizal symbioses in rice and maize.	Nat Plants	3	17073	2017	NOPE1 	
44563	28611791	Daware A.V., Srivastava R., Singh A.K., Parida S.K., Tyagi A.K.	Regional Association Analysis of MetaQTLs Delineates Candidate grain size Genes in Rice.	Front Plant Sci	8	807	2017		
44564	28505081	Nakata H., Lin C.Y., Abolhassani M., Ogawa T., Tateno H., Hirabayashi J., Muramoto K.	Isolation of Rice Bran Lectins and Characterization of Their Unique Behavior in Caco-2 Cells.	Int J Mol Sci	18(5)		2017		
44565	28479230	Thussagunpanit J., Jutamanee K., Homvisasevongsa S., Suksamrarn A., Yamagami A., Nakano T., Asami T.	Characterization of synthetic ecdysteroid analogues as functional mimics of brassinosteroids in plant growth.	J. Steroid Biochem. Mol. Biol.	172	1-8	2017		
44566	28465621	Yang Q.Q., Suen P.K., Zhang C.Q., Mak W.S., Gu M.H., Liu Q.Q., Sun S.S.	Improved growth performance, food efficiency, and lysine availability in growing rats fed with lysine-biofortified rice.	Sci Rep	7(1)	1389	2017		
44567	28547737	Yuan H., Fan S., Huang J., Zhan S., Wang S., Gao P., Chen W., Tu B., Ma B., Wang Y., Qin P., Li S.	08SG2/OsBAK1 regulates grain size and number, and functions differently in Indica and Japonica backgrounds in rice.	Rice (N Y)	10(1)	25	2017	BRD1,SG2,D2,LK3,DWARF4	brd1, OsDWARF, DWARF, OsBR6ox, BR6ox, CYP85A1, CYP85A4, OsDWF, CYP85A1/OsDWARF, OsBRD1, OsCYP85A1,OsSERK1, SERK1, OsBAK1, BAK1, OsSERK1/OsBAK1, OsBISERK1, BISERK1, OsSerk1, OsBAK1-1, 08SG2/OsBAK1, 08SG2, OsSG2,d2, dwf2, CYP90D2, D2/CYP90D2, OsD2, SMG11, OsSMG11, D2/SMG11, OsD2a, OsD2b,lk3(t), lk3(t)*, SG3, GS3, SG3-GS3, OsGW3, OsGS3, RGG3/GS3/Mi/OsGGC1, RGG3, Mi, OsGGC1, GGC1, OsSYL3, SYL3, TT2, OsTT2,OsDWARF4, osdwarf4, OsDWF4, DWF4, CYP90B2, OsCYP90B2, D4, OsD4
44568	28500344	Nakano H., Yoshinaga S., Takai T., Arai-Sanoh Y., Kondo K., Yamamoto T., Sakai H., Tokida T., Usui Y., Nakamura H., Hasegawa T., Kondo M.	Quantitative trait loci for large sink capacity enhance rice grain yield under free-air CO2 enrichment conditions.	Sci Rep	7(1)	1827	2017		
44569	28558018	Sheng Z., Lv Y., Li W., Luo R., Wei X., Xie L., Jiao G., Shao G., Wang J., Tang S., Hu P.	Yellow-Leaf 1 encodes a magnesium-protoporphyrin IX monomethyl ester cyclase, involved in chlorophyll biosynthesis in rice (Oryza sativa L.).	PLoS ONE	12(5)	e0177989	2017	FGL,DVR,HEMA,YGL98,PSAA,YGL10,CHLH,RPOA,ELL,RBCL,YGL1,YL1,PSBA	fgl(fl), fl, fgl, OsFGL, OsPorB, PoPA, PORA, porA, OsPORA, PORB, OsPORB,OsDVR,HEMA1, OsHEMA, GluTR, OsHEMA1, hemA,OsChlD, ChlD, CHLD, OsCHLD, Ygl7, YGL3, OsvWA12, vWA12,PsaA, psaA, PsAA1, psaA1,CAO, OsCAO, CAO1, OsCAO1, Oslls1, Lls1, DVR, PGL,OsChlH, ChlH, OsCHLH,rope, rpoalpha, Rpoalpha, rope, RpoA ,chlI, OsChlI, ChlI, CHLI, OsCHLI, OsCHLI/ELL, OsELL,rbcL, rbcA, OsrbcL,OsYGL1, CHLG, Ygl1, CS, OsCHLG,MTC, OsMTC, YGL8, OsYGL8, OsCRD1, CRD1, OsCRD, CRD, YL-1, PNZIP, OsPNZIP,PsbA, psbA, OsPsbA, PSBD1, OsPSBD1, psbD1
44570	28500402	Chandel G., Dubey M., Gupta S., Patil A.H., Rao A.R.	Identification and characterization of a grain micronutrient-related OsFRO2 rice gene ortholog from micronutrient-rich little millet (Panicum sumatrense).	3 Biotech	7(1)	80	2017		
44571	28499072	Wambugu P., Ndjiondjop M.N., Furtado A., Henry R.	Sequencing of bulks of segregants allows dissection of genetic control of amylose content in rice.	Plant Biotechnol. J.			2017	NAC25,HAP5H,GLUA1,SSIVA,_,_,WX1	ONAC025, ONAC25, OsEnS-144, OsNAC025, NAC025,OsHAP5H, OsNF-YC9, NF-YC9, NFYC9,Glua1*, Glua1, GLUA-1, GluA-1, GluA1, Glu19, OsEnS-16,OsSSIVa, SSIV-1, OsSSIV-1,OsbHLH071, bHLH071, bHLH71,OsEnS-15, EnS-15,wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx
44572	28489041	Sansenya S., Hua Y., Chumanee S., Phasai K., Sricheewin C.	Effect of Gamma Irradiation on 2-Acetyl-1-pyrroline Content, GABA Content and Volatile Compounds of Germinated Rice (Thai Upland Rice).	Plants (Basel)	6(2)		2017		
44573	28533017	Benavent-Gil Y., Rosell C.M.	Morphological and physicochemical characterization of porous starches obtained from different botanical sources and amylolytic enzymes.	Int. J. Biol. Macromol.	103	587-595	2017		
44574	28575477	Wang G.Q., Hao S.S., Gao B., Chen M.X., Liu Y.G., Yang J.C., Ye N.H., Zhang J.H.	Regulation of gene expressions in the remobilization of carbon reserve in straws of rice at grain filling.	Plant Cell Physiol.			2017		
44575	28588605	Pan L., Zhao H., Yu Q., Bai L., Dong L.	miR397/Laccase Gene Mediated Network Improves Tolerance to Fenoxaprop-P-ethyl in Beckmannia syzigachne and Oryza sativa.	Front Plant Sci	8	879	2017	AOX1C,PRX72,_,ARF5,MYB39,LAC15,AAO5	OsAOX1c,prx72, OsPrx72,Os-MYB2, OsMYB2, MYB2,OsARF5,Os-MYB39, OsMYB39, Os2R_MYB43, 2R_MYB43,OsLAC, LAC, OsLAC15, OsLAC13, LAC13 ,OsAAO5
44576	28736485	Civ?? P., Brown T.A.	Origin of rice (Oryza sativa L.) domestication genes.	Genet. Resour. Crop Evol.	64(6)	1125-1132	2017	PROG1,SH4,RC,LABA1	OsPROG1, ZOS7-02, OsZOS7-02,sh4, SH4, SHAT2, SHA1, qSH4, QSH4, OsSh4, Sh4, Osh4, OsMSL23, MSL23,Rc, OsbHLH017, OsbHLH17, SD7-1, qSD7-1/qPC7, OsGL3C, GL3C,LOGL6, OsLOGL6, An-2
44577	28588596	Din M., Zheng W., Rashid M., Wang S., Shi Z.	Evaluating Hyperspectral Vegetation Indices for leaf area Index Estimation of Oryza sativa L. at Diverse Phenological Stages.	Front Plant Sci	8	820	2017		
44578	28555143	Muthuramalingam P., Krishnan S.R., Pothiraj R., Ramesh M.	Global Transcriptome Analysis of Combined Abiotic Stress Signaling Genes Unravels Key Players in Oryza sativa L.: An In silico Approach.	Front Plant Sci	8	759	2017		
44579	28560587	De Schutter K., Tsaneva M., Kulkarni S.R., Roug? P., Vandepoele K., Van Damme EJM.	Evolutionary relationships and expression analysis of EUL domain proteins in rice (Oryza sativa).	Rice (N Y)	10(1)	26	2017		
44580	28540496	Kant R., Dasgupta I.	Phenotyping of VIGS-mediated gene silencing in rice using a vector derived from a DNA virus.	Plant Cell Rep.	36(7)	1159-1170	2017		
44581	28526984	Yan H., Li L., Liu P., Jiang X., Wang L., Fang J., Lin Z., Wang F., Su J., Lu B.R.	Reduced weed seed shattering by silencing a cultivated rice gene: strategic mitigation for escaped transgenes.	Transgenic Res.	26(4)	465-475	2017		
44582	28744184	Zhang A., Liu C., Chen G., Hong K., Gao Y., Tian P., Peng Y., Zhang B., Ruan B., Jiang H., Guo L., Qian Q., Gao Z.	Genetic analysis for rice seedling vigor and fine mapping of a major QTL qSSL1b for seedling shoot length.	Breed. Sci.	67(3)	307-315	2017		
44583	28521637	Kanda Y., Yokotani N., Maeda S., Nishizawa Y., Kamakura T., Mori M.	The receptor-like cytoplasmic kinase BSR1 mediates chitin-induced defense signaling in rice cells.	Biosci. Biotechnol. Biochem.	81(8)	1497-1502	2017		
44584	28371923	Yasui Y., Tanaka W., Sakamoto T., Kurata T., Hirano H.Y.	Genetic Enhancer Analysis Reveals that FLORAL ORGAN NUMBER2 and OsMADS3 Co-operatively Regulate Maintenance and Determinacy of the Flower Meristem in Rice.	Plant Cell Physiol.	58(5)	893-903	2017		
44585	28556941	Wang D.R., Han R., Wolfrum E.J., McCouch S.R.	The buffering capacity of stems: genetic architecture of nonstructural carbohydrates in cultivated Asian rice, Oryza sativa.	New Phytol.	215(2)	658-671	2017		
44586	28582731	Zhu Q., Wang L., Dong Q., Chang S., Wen K., Jia S., Chu Z., Wang H., Gao P., Zhao H., Han S., Wang Y.	FRET-based glucose imaging identifies glucose signalling in response to biotic and abiotic stresses in rice roots.	J. Plant Physiol.	215	65-72	2017		
44587	28712502	Bi H., Yang B.	Gene Editing With TALEN and CRISPR/Cas in Rice.	Prog Mol Biol Transl Sci	149	81-98	2017		
44588	28534133	Caddell D.F., Park C.J., Thomas N.C., Canlas P.E., Ronald P.C.	Silencing of the Rice Gene LRR1 Compromises Rice XA21 transcript Accumulation and XA21-Mediated Immunity.	Rice (N Y)	10(1)	23	2017	_,RLCK11,XA21,LIP5,TRX29,SERK1,WRKY53,RCA,_,PSAK,_,TIFY11D,_,BZIP7,MTI3A,USP30,_,_,_,CML24,NPC1,_,_,GLN1;1,_	,OsRLCK11,Xa21*, Xa21, OsXA21,OsLEA24, LEA24, WSI724, OsWSI724, OsLIP5,OsTRX m5, Ostrxm5, OsTRXM5, TRXM5, OsTrxm, OsTrx29, Trx29,OsSERK1, OsSERK2, OsBiSERK1, SERK2, BiSERK1, OsSerk2, OsBAK1-2,OsWRKY53, WRKY-53,OsRcaII, rca, rcaII, OsRcaI, RCAI, ME137, OsRCA1, RCA, RCAalpha, OsRCAalpha, OsRCAbeta,,PsaK, OsPSAK,OsLRP, OsLRR1, LRR1,OsTIFY11d, OsJAZ1, JAZ1, OsJAZ 12, OsJAZ12, JAZ12,,OsbZIP07, OsbZIP7,OsMT3a, MT3a, OsMT-I-3a, MT-I-3a, MTe, met2, OsMT3, MT3, OsMTI-3a, MTI-3a,OsUSP, USP, OsUSP30, OsUSP4, USP4,,,,OsCML24,OsNPC1,BAS1, OsTPX, Os2-Cys PrxA, 2-Cys PrxA, Os2-CysPrxA, 2-CysPrxA, 2CYSPRXA, OsPRX2, PRX2,OsDjC82, DjC82, XB21,OsGLN1;1, GS1, RGS28, OsGS1;1, GS1;1, OsGS, GS1, OsGS1, GLN1-1, OsGS1-1, GS1-1, GS1.1, OsGS1.1,
44589	28556915	Pruitt R.N., Joe A., Zhang W., Feng W., Stewart V., Schwessinger B., Dinneny J.R., Ronald P.C.	A microbially derived tyrosine-sulfated peptide mimics a plant peptide hormone.	New Phytol.	215(2)	725-736	2017		
44590	28487273	Yifan W., Zhen L., Jiaowen P., Yingxiu L., Qingguo W., Yan'an G., Wei L.	Cloning and functional analysis of the SiRLK35 gene in Setaria italic L.	Yi Chuan	39(5)	413-422	2017		
44591	28493203	Chaipanya C., Telebanco-Yanoria MJ., Quime B., Longya A., Korinsak S., Korinsak S., Toojinda T., Vanavichit A., Jantasuriyarat C., Zhou B.	Dissection of broad-spectrum resistance of the Thai rice variety Jao Hom Nin conferred by two resistance genes against rice blast.	Rice (N Y)	10(1)	18	2017		
44592	28550206	Dell'Aglio E., Boycheva S., Fitzpatrick T.B.	The pseudoenzyme PDX1.2 Sustains Vitamin B6 Biosynthesis as a Function of Heat Stress.	Plant Physiol.	174(4)	2098-2112	2017	HSP101,PDX1.3A,PDX1.3C,PDX1.3B	Oshsp101, OsHSP101, ClpB-cyt, OsClpB-cyt, ClpB-C/Hsp100, OsClpB-C,OsPDX1.3a, OsPDX1.1, PDX1.1,OsPDX1.3c, OsPDX1.3, PDX1.3,OsPDX1.3b, OsPDX1.2, PDX1.2
44593	28551765	Yue E., Li C., Li Y., Liu Z., Xu J.H.	miR529a modulates panicle architecture through regulating SQUAMOSA PROMOTER BINDING-LIKE genes in rice (Oryza sativa).	Plant Mol. Biol.	94(4-5)	469-480	2017		
44594	28556940	Tanaka W., Toriba T., Hirano H.Y.	Three TOB1-related YABBY genes are required to maintain proper function of the spikelet and branch meristems in rice.	New Phytol.	215(2)	825-839	2017	SEU2,SEU,SEU3,YAB3,YAB5,YAB4	OsSEU2,OsSEU, OsSEU1, SEU1 ,OsSEU3, OsSLK, SLK,OsYAB3, OsYAB4, TOB3,OsYABBY5, OsYAB3, YAB3, Os YABBY5, TOB1, OsTPB1,OsYAB4, OsYAB7, TOB2, 
44595	28546437	Shivhare D., Mueller-Cajar O.	In Vitro Characterization of Thermostable CAM Rubisco activase Reveals a Rubisco Interacting Surface Loop.	Plant Physiol.	174(3)	1505-1516	2017		
44596	28470512	Liu W.T., Chen P.W., Chen L.C., Yang C.C., Chen S.Y., Huang G., Lin T.C., Ku H.M., Chen J.J.W.	Suppressive effect of microRNA319 expression on rice plant height.	Theor. Appl. Genet.	130(7)	1507-1518	2017		
44597	28466433	Crofts N., Sugimoto K., Oitome N.F., Nakamura Y., Fujita N.	Differences in specificity and compensatory functions among three major starch synthases determine the structure of amylopectin in rice endosperm.	Plant Mol. Biol.	94(4-5)	399-417	2017	ALK,WX1,FLO5,SSI	alk, SSII-3, OsSSIIa, OsSSII-3, SSIIa, SSS2A, OsSSIIaChr6, SS2a,wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx,OsSSIIIa, SSIII-2, OsSSIII-2, OsSS3A, SS3A, SS3a, OsSSSIIIa, SSIIIa, Flo5,OsSSI, SSS 1, SSS1, SS1, OsSS1, SSSI, OsSSSI
44598	28529503	Reim A., Hern?ndez M., Klose M., Chidthaisong A., Yuttitham M., Conrad R.	Response of Methanogenic Microbial Communities to Desiccation Stress in Flooded and Rain-Fed Paddy Soil from Thailand.	Front Microbiol	8	785	2017		
44599	28611804	Dong Y., Jin X., Tang Q., Zhang X., Yang J., Liu X., Cai J., Zhang X., Wang X., Wang Z.	Development and Event-specific Detection of Transgenic Glyphosate-resistant Rice Expressing the G2-EPSPS gene.	Front Plant Sci	8	885	2017		
44600	28744170	Nagaoka I., Sasahara H., Tabuchi H., Shigemune A., Matsushita K., Maeda H., Goto A., Fukuoka S., Ando T., Miura K.	Improvement of seed shattering and dormancy in Oryza sativa L. 'Hokuriku 193' based on genetic information.	Breed. Sci.	67(3)	173-180	2017		
44601	28744182	Jing W., Deng P., Cao C., Zhang W.	Fine mapping of qSKC-1, a major quantitative trait locus for shoot K(+) concentration, in rice seedlings grown under salt stress.	Breed. Sci.	67(3)	286-295	2017		
44602	28529470	Cao X., Liu Y., Liu Z., Liu F., Wu Y., Zhou Z., Cai X., Wang X., Zhang Z., Wang Y., Luo Z., Peng R., Wang K.	Microdissection of the Ah01 chromosome in upland cotton and microcloning of resistance gene anologs from the single chromosome.	Hereditas	154	13	2017		
44603	28611797	Kadam S., Abril A., Dhanapal A.P., Koester R.P., Vermerris W., Jose S., Fritschi F.B.	Characterization and Regulation of Aquaporin Genes of Sorghum [Sorghum bicolor (L.) Moench] in Response to Waterlogging Stress.	Front Plant Sci	8	862	2017		
44604	28560644	Ahad R.I.A., Goswami S., Syiem M.B.	Biosorption and equilibrium isotherms study of cadmium removal by Nostoc muscorum Meg 1: morphological, physiological and biochemical alterations.	3 Biotech	7(2)	104	2017		
44605	28549969	Du A., Tian W., Wei M., Yan W., He H., Zhou D., Huang X., Li S., Ouyang X.	The DTH8-Hd1 module Mediates Day-Length-Dependent Regulation of Rice Flowering.	Mol Plant	10(7)	948-961	2017	HD3A,SE1,RFT1,EF1,HD5	Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, OsHd1,  Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,FT-L 3, OsFTL3, FTL3, FT-L3, RFT, OsRFT1,Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,Hd5(t)*, Hd5, qHD5, HAP3H, OsHAP3H, NF-YB, CBF-A, DTH8 , qHD5(t)*, Ghd8, Ghd8/DTH8, Lhd1, NF-YB11, OsNF-YB11, NFYB11, LH8, DTH8/Ghd8, RH8, DTH8/Ghd8/LHD1, CAR8, DTH8/Ghd8/ OsHAP3H, EF8, OsEF8
44606	28517045	Liu K., Yu Y., Dong A., Shen W.H.	SET DOMAIN GROUP701 encodes a H3K4-methytransferase and regulates multiple key processes of rice plant development.	New Phytol.	215(2)	609-623	2017	RFT1,HD3A,_,EF1	FT-L 3, OsFTL3, FTL3, FT-L3, RFT, OsRFT1,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,OsSET27, SDG701 ,Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 
44607	28582550	Sasaki K., Fujita D., Koide Y., Lumanglas P.D., Gannaban R.B., Tagle A.G., Obara M., Fukuta Y., Kobayashi N., Ishimaru T.	Fine mapping of a quantitative trait locus for spikelet number per panicle in a new plant type rice and evaluation of a near-isogenic line for grain productivity.	J. Exp. Bot.	68(11)	2693-2702	2017		
44608	28483441	Jia M., Yu X., Jiang J., Li Z., Feng Y.	The cytidine repressor participates in the regulatory pathway of indole in Pantoea agglomerans.	Res. Microbiol.			2017		
44609	28558653	Shi Y., Gao L., Wu Z., Zhang X., Wang M., Zhang C., Zhang F., Zhou Y., Li Z.	Genome-wide association study of salt tolerance at the seed germination stage in rice.	BMC Plant Biol.	17(1)	92	2017		
44610	28487477	Chen Z.C., Yamaji N., Horie T., Che J., Li J., An G., Ma J.F.	A Magnesium Transporter OsMGT1 Plays a Critical Role in salt tolerance in Rice.	Plant Physiol.	174(3)	1837-1849	2017		
44611	28567664	Hackauf B., Haffke S., Fromme F.J., Roux S.R., Kusterer B., Musmann D., Kilian A., Miedaner T.	QTL mapping and comparative genome analysis of agronomic traits including grain yield in winter rye.	Theor. Appl. Genet.			2017		
44612	28469286	Li T., Angeles O., Marcaida M., Manalo E., Manalili M.P., Radanielson A., Mohanty S.	From ORYZA2000 to ORYZA (v3): An improved simulation model for rice in drought and nitrogen-deficient environments.	Agricultural and Forest Meteorology	237-238	246-256	2017		
44613	28587095	Van Holle S., De Schutter K., Eggermont L., Tsaneva M., Dang L., Van Damme EJM.	Comparative Study of Lectin Domains in Model Species: New Insights into Evolutionary Dynamics.	Int J Mol Sci	18(6)		2017		
44614	28483876	Zhu Y., Yu Y., Cheng K., Ouyang Y., Wang J., Gong L., Zhang Q., Li X., Xiao J., Zhang Q.	Processes Underlying a Reproductive Barrier in indica-japonica Rice Hybrids Revealed by Transcriptome Analysis.	Plant Physiol.	174(3)	1683-1696	2017		
44615	28523639	Swamy B.P.M., Shamsudin N.A.A., Rahman S.N.A., Mauleon R., Ratnam W., Sta Cruz MT., Kumar A.	Association Mapping of Yield and Yield-related Traits Under Reproductive Stage Drought Stress in Rice (Oryza sativa L.).	Rice (N Y)	10(1)	21	2017		
44616	28522870	Guo J., Hu X., Gao L., Xie K., Ling N., Shen Q., Hu S., Guo S.	The rice production practices of high yield and high nitrogen use efficiency in Jiangsu, China.	Sci Rep	7(1)	2101	2017		
44617	28553305	Moon S.J., Kim H.Y., Hwang H., Kim J.A., Lee Y., Min M.K., Yoon I.S., Kwon T.R., Kim B.G.	A Dominant Negative OsKAT2 Mutant Delays Light-Induced Stomatal Opening and Improves drought tolerance without Yield Penalty in Rice.	Front Plant Sci	8	772	2017	KAT2	OsKAT2
44618	28551566	Cui J., Liu T., Li F., Yi J., Liu C., Yu H.	Silica nanoparticles alleviate cadmium toxicity in rice cells: Mechanisms and size effects.	Environ. Pollut.	228	363-369	2017		
44619	28744172	Kinoshita N., Kato M., Koyasaki K., Kawashima T., Nishimura T., Hirayama Y., Takamure I., Sato T., Kato K.	Identification of quantitative trait loci for rice grain quality and yield-related traits in two closely related Oryza sativa L. subsp. japonica cultivars grown near the northernmost limit for rice paddy cultivation.	Breed. Sci.	67(3)	191-206	2017		
44620	28647840	Yang J., Sun X.Q., Yan S.Y., Pan W.J., Zhang M.X., Cai Q.N.	Interaction of Ferulic Acid with Glutathione S-Transferase and Carboxylesterase Genes in the Brown Planthopper, Nilaparvata lugens.	J. Chem. Ecol.			2017		
44621	28600945	Mondal N.K.	Effect of fluoride on photosynthesis, growth and accumulation of four widely cultivated rice (Oryza sativa L.) varieties in India.	Ecotoxicol. Environ. Saf.	144	36-44	2017		
44622	28627026	Zeng Y., Li Q., Wang H., Zhang J., Du J., Feng H., Blumwald E., Yu L., Xu G.	Two NHX-type transporters from Helianthus tuberosus improve the tolerance of rice to salinity and nutrient deficiency stress.	Plant Biotechnol. J.			2017		
44623	28592666	Kassaw T., Nowak S., Schnabel E., Frugoli J.	ROOT DETERMINED NODULATION1 Is Required for M. truncatula CLE12, But Not CLE13, Peptide Signaling through the SUNN Receptor Kinase.	Plant Physiol.	174(4)	2445-2456	2017	RDN	OsRDN, OsRDN1, RDN1
44624	28671251	Henriques A.R., Farias D.D.R., Costa de Oliveira A.	Identification and characterization of the bZIP transcription factor involved in zinc homeostasis in cereals.	Genet. Mol. Res.	16(2)		2017		
44625	28694820	Wang Y., Ren Y., Zhou K., Liu L., Wang J., Xu Y., Zhang H., Zhang L., Feng Z., Wang L., Ma W., Wang Y., Guo X., Zhang X., Lei C., Cheng Z., Wan J.	WHITE STRIPE LEAF4 Encodes a Novel P-Type PPR Protein Required for Chloroplast Biogenesis during Early Leaf Development.	Front Plant Sci	8	1116	2017	YGL98,FGL,PSAA,RPS12,PSAB,RPL2,PSBA,WSL4,ELL,RPL2,ATPF,RBCS,CAB2R,CHLH,NDHA	OsChlD, ChlD, CHLD, OsCHLD, Ygl7, YGL3, OsvWA12, vWA12,fgl(fl), fl, fgl, OsFGL, OsPorB, PoPA, PORA, porA, OsPORA, PORB, OsPORB,PsaA, psaA, PsAA1, psaA1,rps12,PsaB, psaB, PsAA2, psaA2,rpl2,PsbA, psbA, OsPsbA, PSBD1, OsPSBD1, psbD1,OsSTA65, STA65,chlI, OsChlI, ChlI, CHLI, OsCHLI, OsCHLI/ELL, OsELL,rpl2,atpF, OsatpF,rbcS, OsRbcS, RBCS-C, RbcS2, OsRBCS2, RbcS1, OsRbcS2, OsrbcS1,Oscab2R, CAB-2, OsLhcp, Lhcb1, Lhcb1a, OsLhcb1, OsLhcb1a ,OsChlH, ChlH, OsCHLH,ndhA
44626	28664567	Liu J., Du H., Ding X., Zhou Y., Xie P., Wu J.	Mechanisms of callose deposition in rice regulated by exogenous abscisic acid and its involvement in rice resistance to Nilaparvata lugens St?l (Hemiptera:?Delphacidae).	Pest Manag. Sci.			2017		
44627	28645639	Meng X., Yu H., Zhang Y., Zhuang F., Song X., Gao S., Gao C., Li J.	Construction of a Genome-Wide Mutant Library in?Rice Using CRISPR/Cas9.	Mol Plant			2017		
44628	28599126	Zia Z., Bakhat H.F., Saqib Z.A., Shah G.M., Fahad S., Ashraf M.R., Hammad H.M., Naseem W., Shahid M.	Effect of water management and silicon on germination, growth, phosphorus and arsenic uptake in rice.	Ecotoxicol. Environ. Saf.	144	11-18	2017		
44629	28158396	Iwayama K., Aisaka Y., Kutsuna N., Nagano A.J.	FIT: statistical modeling tool for transcriptome dynamics under fluctuating field conditions.	Bioinformatics	33(11)	1672-1680	2017		
44630	28605980	Shahzad R., Waqas M., Khan A.L., Al-Hosni K., Kang S.M., Seo C.W., Lee I.J.	Indoleacetic acid production and plant growth promoting potential of bacterial endophytes isolated from rice (Oryza sativa L.) seeds.	Acta. Biol. Hung.	68(2)	175-186	2017		
44631	28664529	El-Namaky R., van Oort PAJ.	Phenology, sterility and inheritance of two environment genic male sterile (EGMS) lines for hybrid rice.	Rice (N Y)	10(1)	31	2017		
44632	28751198	Watanabe B., Yamamoto S., Yokoi T., Sugiura A., Horoiwa S., Aoki T., Miyagawa H., Nakagawa Y.	Brassinolide-like activity of castasterone analogs with varied side chains against rice lamina inclination.	Bioorg. Med. Chem.	25(17)	4566-4578	2017		
44633	28630893	Ma H., Duan J., Ke J., He Y., Gu X., Xu T.H., Yu H., Wang Y., Brunzelle J.S., Jiang Y., Rothbart S.B., Xu H.E., Li J., Melcher K.	A D53 repression motif induces oligomerization of TOPLESS corepressors and promotes assembly of a corepressor-nucleosome complex.	Sci Adv	3(6)	e1601217	2017	ASP1,D53,WD40-12	OsLIS-L1, OsWD40-155, ASP1, TPR2, OsTPR2, OsREL2, REL2, OsTPL3, TPL3, OsTPL2, TPL2, ASP-LSL,D53(D K3), DK3, Dwf34, SMXL6/7/8, OsD53,OsWD40-12, TPR1, OsTPR1
44634	28577284	Park C.J., Wei T., Sharma R., Ronald P.C.	Overexpression of Rice auxilin-like protein, XB21, Induces Necrotic Lesions, up-Regulates Endocytosis-Related Genes, and Confers Enhanced Resistance to Xanthomonas oryzae pv. oryzae.	Rice (N Y)	10(1)	27	2017	XA21,_	Xa21*, Xa21, OsXA21,OsDjC82, DjC82, XB21
44635	28663588	Fang Y.L., Peng Y.L., Fan J.	The Nep1-like protein family of Magnaporthe oryzae is dispensable for the infection of rice plants.	Sci Rep	7(1)	4372	2017		
44636	28655403	Schmalzer S.	Yuan Longping, hybrid rice, and the meaning of science in the cultural revolution and beyond.	Endeavour			2017		
44637	28488420	Kobayashi N.I., Yamaji N., Yamamoto H., Okubo K., Ueno H., Costa A., Tanoi K., Matsumura H., Fujii-Kashino M., Horiuchi T., Nayef M.A., Shabala S., An G., Ma J.F., Horie T.	OsHKT1;5 mediates Na(+) exclusion in the vasculature to protect leaf blades and reproductive tissues from salt toxicity in rice.	Plant J.	91(4)	657-670	2017	SKC1	OsHKT8, HKT8, Os-HKT1;5, OsHKT1;5, HKT1;5, SKC1, qSKC-1(t), OsSKC1
44638	28671258	Auler P.A., Benitez L.C., do Amaral MN., Vighi I.L., Rodrigues G.S., da Maia LC., Braga E.J.B.	Selection of candidate reference genes and validation for real-time PCR studies in rice plants exposed to low temperatures.	Genet. Mol. Res.	16(2)		2017	SODCC1,RUBQ2,NOE1,GR2,RFA4,APX2,UBQ5	sodCc1, SODCC.1, sodA, RSODA, OsSOD1, OsCSD2, OsSodA, SodCc2, OsSODA1, SODCc1-Cu/Zn, OsCu/Zn-SOD2, Cu/Zn-SOD2, OsCSD1.2, CSD1.2, OsSODCc1-Cu/Zn, SODCc1-Cu/Zn, CuZnSOD1, Cu/ZnSOD1, OsCu/ZnSOD1, OsCSD4, CDS4, CuZnSOD4, OsCuZnSOD1, OsCSD1, CSD1, OsSOD2,rubq2, rub1, Ubq1, Rubq1, UBQ10 ,CATC, OsCat, OsCatC, OsCATC, OsNOE1, noe1, catC, OsCATC, CAT3, OsCAT3, LLM9428, OsLLM9428,OsGR2, RGRC2, OsGR, OsGR3, OsRGRC2,rfa4*, REFA4, refa4, eEF-1a, OsEF-1a, OsEF1A, EF1A, eIF-1-alpha,OsAPX2, OsAPx02, APXb, OsAPx2, OSAPX2, APx2, cAPX, OsAPX1, APX1,RPS27a, OsUBQ5, OsRPS27a
44639	28642778	Li M., Wang W.S., Pang Y.L., Domingo J.R., Ali J., Xu J.L., Fu B.Y., Venus E.B., Li Z.K.	Characterization of Salt-Induced Epigenetic Segregation by Genome-Wide Loss of Heterozygosity and its Association with Salt Tolerance in Rice (Oryza sativa L.).	Front Plant Sci	8	977	2017		
44640	28633373	Nakajima Y., Nara Y., Kobayashi A., Sugita T., Miyazawa Y., Fujii N., Takahashi H.	Auxin transport and response requirements for root hydrotropism differ between plant species.	J. Exp. Bot.	68(13)	3441-3456	2017		
44641	28638401	Fan F., Li N., Chen Y., Liu X., Sun H., Wang J., He G., Zhu Y., Li S.	Development of Elite BPH-Resistant Wide-Spectrum Restorer Lines for Three and Two Line Hybrid Rice.	Front Plant Sci	8	986	2017	RF1,GN8.1,RF3,_,BPH9,BPH6,_	Rf1 (Rf-1), rf-1, PPR791, PPR8-1, Rf-1, Rf1, Rf-1A, Rf5, Rf1a, RF5, Rf5(t)*(Rf(t)*), RF1A, PPR6, PLS31, OsPLS31,OsFBH1, OsbHLH112, DLN213, OsDLN213, Gn8.1, OsGn8.1,Rf3* (R2, Rf2), Rf2, R2, Rf3, Rf-3,Rf6,Bph9, BPH9/26, Bph26(t), BPH26, Bph18(t), BPH18,Bph6, OsBPH6,Rf4, Rf-4, PPR782a, PPR9, PPR3
44642	28668595	Ashrafuzzaman M., Lubna F.A., Holtkamp F., Manning W.J., Kraska T., Frei M.	Diagnosing ozone stress and differential tolerance in rice (Oryza sativa L.) with ethylenediurea (EDU).	Environ. Pollut.	230	339-350	2017		
44643	28487379	Sawicki A., Zhou S., Kwiatkowski K., Luo M., Willows R.D.	1-N-histidine phosphorylation of ChlD by the AAA(+) ChlI2 stimulates magnesium chelatase activity in chlorophyll synthesis.	Biochem. J.	474(12)	2095-2105	2017		
44644	28654018	Wang Y., Hou Y., Qiu J., Li Z., Zhao J., Tong X., Zhang J.	A Quantitative Acetylomic Analysis of Early Seed Development in Rice (Oryza sativa L.).	Int J Mol Sci	18(7)		2017		
44645	28549191	Gu M., Zhang J., Li H., Meng D., Li R., Dai X., Wang S., Liu W., Qu H., Xu G.	Maintenance of phosphate homeostasis and root development are coordinately regulated by MYB1, an R2R3-type MYB transcription factor in rice.	J. Exp. Bot.	68(13)	3603-3615	2017		
44646	28645638	Lu Y., Ye X., Guo R., Huang J., Wang W., Tang J., Tan L., Zhu J.K., Chu C., Qian Y.	Genome-wide Targeted Mutagenesis in Rice Using the CRISPR/Cas9 System.	Mol Plant			2017		
44647	28577021	Zhang R., Xue C., Liu G., Liu X., Zhang M., Wang X., Zhang T., Gong Z.	Segmental Duplication of Chromosome 11 and its Implications for Cell Division and Genome-wide Expression in Rice.	Sci Rep	7(1)	2689	2017		
44648	28620222	Singh P.K., Indoliya Y., Chauhan A.S., Singh S.P., Singh A.P., Dwivedi S., Tripathi R.D., Chakrabarty D.	Nitric oxide mediated transcriptional modulation enhances plant adaptive responses to arsenic stress.	Sci Rep	7(1)	3592	2017		
44649	28622672	Zhang H., Yue M., Zheng X., Xie C., Zhou H., Li L.	Physiological effects of single- and multi-walled carbon nanotubes on rice seedlings.	IEEE Trans Nanobioscience			2017		
44650	28573759	Wakabayashi K., Soga K., Hoson T., Kotake T., Kojima M., Sakakibara H., Yamazaki T., Higashibata A., Ishioka N., Shimazu T., Kamada M.	Persistence of plant hormone levels in rice shoots grown under microgravity conditions in space: its relationship to maintenance of shoot growth.	Physiol Plant			2017		
44651	28653783	Samofalova D.O., Karpov P.A., Raevsky A.V., Blume Y.B.	Protein phosphatases potentially associated with regulation of microtubules, their spatial structure reconstruction and analysis.	Cell Biol. Int.			2017		
44652	28676818	Gu J., Zhou Z., Li Z., Chen Y., Wang Z., Zhang H., Yang J.	Photosynthetic Properties and Potentials for Improvement of Photosynthesis in Pale Green Leaf Rice under High Light Conditions.	Front Plant Sci	8	1082	2017		
44653	28584974	Ps S., Sv A.M., Prakash C., Mk R., Tiwari R., Mohapatra T., Singh N.K.	High Resolution Mapping of QTLs for heat tolerance in Rice Using a 5K SNP Array.	Rice (N Y)	10(1)	28	2017		
44654	28690622	Zhong C., Cao X., Hu J., Zhu L., Zhang J., Huang J., Jin Q.	Nitrogen Metabolism in Adaptation of Photosynthesis to Water Stress in Rice Grown under Different Nitrogen Levels.	Front Plant Sci	8	1079	2017		
44655	28650429	Kim J.M., To T.K., Matsui A., Tanoi K., Kobayashi N.I., Matsuda F., Habu Y., Ogawa D., Sakamoto T., Matsunaga S., Bashir K., Rasheed S., Ando M., Takeda H., Kawaura K., Kusano M., Fukushima A., Endo T.A., Kuromori T., Ishida J., Morosawa T., Tanaka M., Torii C., Takebayashi Y., Sakakibara H., Ogihara Y., Saito K., Shinozaki K., Devoto A., Seki M.	Acetate-mediated novel survival strategy against drought in plants.	Nat Plants	3	17097	2017		
44656	28716407	Fang C., Zhang P., Jian X., Chen W., Lin H., Li Y., Lin W.	Overexpression of Lsi1 in cold-sensitive rice mediates transcriptional regulatory networks and enhances resistance to chilling stress.	Plant Sci.	262	115-126	2017	MIR395O,WRKY53,FKBP20-2,LSI1,SHMT1,MIR395C,MIR530,MIR1860,MIR169,ATPS,MIR390	OsmiR395o, miR395o, osa-MIR395o,OsWRKY53, WRKY-53,OsFKBP20-2,lsi1, NIP2-1, OsNIP2;1, NIP2;1, OsLsi1, lsi(t), OsNIP2.1/OsLsi1/OsSIIT1, OsNIP2.1, NIP2.1,OsSHM1, SHM1, OsSHMT1, CDM1, OsCDM1, OsSHTM3, SHTM3, OsSHMT, SHMT,OsmiR395c, miR395c, osa-MIR395c,miR530, Osa-miR530, OsmiR530, osa-MIR530, osa-miR530 osa-miR530-3p, osa-miR530-5p,miR1860, osa-miR1860, osa-MIR1860osa-miR1860-3p osa-miR1860-5p,miR169, osa-miR169, osa-MIR169a, miR169a, osa-miR169a,OsATPS, OsaATPS, PAPSS,OsmiR390, miR390, osa-MIR390osa-miR390, osa-miR390-3p, osa-miR390-5p
44657	28674279	Matsumoto H., Yasui Y., Kumamaru T., Hirano H.Y.	Characterization of a half-pipe-like leaf1 mutant that exhibits a curled leaf phenotype.	Genes Genet. Syst.			2017	_	HAL1
44658	28608803	Haslam T.M., Gerelle W.K., Graham S.W., Kunst L.	The Unique Role of the ECERIFERUM2-LIKE Clade of the BAHD Acyltransferase Superfamily in Cuticular Wax Metabolism.	Plants (Basel)	6(2)		2017	_	OsCER2, CER2, HMS1I, OsHMS1I, OsCER26L, CER26L
44659	28640974	Li Y., Zhang Y., Wang Q.X., Wang T.T., Cao X.L., Zhao Z.X., Zhao S.L., Xu Y.J., Xiao Z.Y., Li J.L., Fan J., Yang H., Huang F., Xiao S., Wang W.M.	RESISTANCE TO POWDERY MILDEW8.1 boosts pattern-triggered immunity against multiple pathogens in Arabidopsis and rice.	Plant Biotechnol. J.			2017	RSOSPR10	RSOsPR10, RsOsPR10a, OsPR10a, OsPR10alpha, OsPR10, PR10, OsBETV1, BETV1
44660	28663756	Ahn H., Jung I., Shin S.J., Park J., Rhee S., Kim J.K., Jung W., Kwon H.B., Kim S.	Transcriptional Network Analysis Reveals Drought Resistance Mechanisms of AP2/ERF Transgenic Rice.	Front Plant Sci	8	1044	2017		
44661	28627335	Li C.C., Dang F., Li M., Zhu M., Zhong H., Hintelmann H., Zhou D.M.	Effects of exposure pathways on the accumulation and phytotoxicity of silver nanoparticles in soybean and rice.	Nanotoxicology	11(5)	699-709	2017		
44662	28605576	Hu X., Meng X., Liu Q., Li J., Wang K.	Increasing the efficiency of CRISPR-Cas9-VQR precise genome editing in rice.	Plant Biotechnol. J.			2017		
44663	28636095	Xie Y., Niu B., Long Y., Li G., Tang J., Zhang Y., Ren D., Liu Y.G., Chen L.	Suppression or knockout of SaF/SaM overcomes the Sa-mediated hybrid male sterility in rice.	J Integr Plant Biol			2017		
44664	28633293	Takemoto Y., Tsunemitsu Y., Fujii-Kashino M., Mitani-Ueno N., Yamaji N., Ma J.F., Kato S.I., Iwasaki K., Ueno D.	The Tonoplast-Localized Transporter MTP8.2 Contributes to Manganese Detoxification in the Shoots and Roots of Oryza sativa L.	Plant Cell Physiol.			2017	MTP8,MTP8.1	OsMTP8, MTP8.2, OsMTP8.2,OsMTP8.1
44665	28642772	Schl?ppi MR., Jackson A.K., Eizenga G.C., Wang A., Chu C., Shi Y., Shimoyama N., Boykin D.L.	Assessment of Five Chilling Tolerance Traits and GWAS Mapping in Rice Using the USDA Mini-Core Collection.	Front Plant Sci	8	957	2017		
44666	28607371	Ge C., Wang L., Ye W., Wu L., Cui Y., Chen P., Pan J., Zhang D., Hu J., Zeng D., Dong G., Qian Q., Guo L., Xue D.	Single-point Mutation of an Histidine-aspartic Domain-containing Gene involving in Chloroplast Ribosome Biogenesis Leads to White Fine Stripe Leaf in Rice.	Sci Rep	7(1)	3298	2017	FGL,CHLH,DVR,CAO2,SGR,PSAA,V1,_,RCA,WFSL1,PORA,NOL,YGL10,V2,RPOA,PSBA,_	fgl(fl), fl, fgl, OsFGL, OsPorB, PoPA, PORA, porA, OsPORA, PORB, OsPORB,OsChlH, ChlH, OsCHLH,OsDVR,OsCAO2, OsCAO, CAO,sgr(t), sgr, OsSGR, OsSgr, SGR1, OsSGR1,PsaA, psaA, PsAA1, psaA1,v1, NUS1,OsV1, OsNUS1,RPL5,OsRcaII, rca, rcaII, OsRcaI, RCAI, ME137, OsRCA1, RCA, RCAalpha, OsRCAalpha, OsRCAbeta,,OsPorA, OsPORA,nol, NOL1, OsNOL, OsNOL1,CAO, OsCAO, CAO1, OsCAO1, Oslls1, Lls1, DVR, PGL,v2, mGmk, GMK, Gmk, pt/mtGK, pt/mt GK, OsV2, OsGMK,rope, rpoalpha, Rpoalpha, rope, RpoA ,PsbA, psbA, OsPsbA, PSBD1, OsPSBD1, psbD1,AtpB
44667	28611462	Chen Y., Sun X., Zhou X., Hebelstrup K.H., Blennow A., Bao J.	Highly phosphorylated functionalized rice starch produced by transgenic rice expressing the potato GWD1 gene.	Sci Rep	7(1)	3339	2017		
44668	28854638	Trung K.H., Nguyen T.K., Khuat H.B.T., Nguyen T.D., Khanh T.D., Xuan T.D., Nguyen X.H.	Whole Genome Sequencing Reveals the Islands of Novel Polymorphisms in Two Native Aromatic Japonica Rice Landraces from Vietnam.	Genome Biol Evol	9(6)	1816-1820	2017		
44669	28572585	Wang X., Zhang Z., Fu T., Hu L., Xu C., Gong L., Wendel J.F., Liu B.	Gene-body CG methylation and divergent expression of duplicate genes in rice.	Sci Rep	7(1)	2675	2017		
44670	28584922	Wang Y., Geng L., Yuan M., Wei J., Jin C., Li M., Yu K., Zhang Y., Jin H., Wang E., Chai Z., Fu X., Li X.	Deletion of a target gene in Indica rice via CRISPR/Cas9.	Plant Cell Rep.	36(8)	1333-1343	2017		
44671	28666057	Zhang J., Luo T., Wang W., Cao T., Li R., Lou Y.	Silencing OsSLR1 enhances the resistance of rice to the brown planthopper Nilaparvata lugens.	Plant Cell Environ.			2017		
44672	28592253	You C., Chen L., He H., Wu L., Wang S., Ding Y., Ma C.	iTRAQ-based proteome profile analysis of superior and inferior Spikelets at early grain filling stage in japonica Rice.	BMC Plant Biol.	17(1)	100	2017		
44673	28582424	Campbell M.T., Bandillo N., Al Shiblawi FRA., Sharma S., Liu K., Du Q., Schmitz A.J., Zhang C., V?ry AA., Lorenz A.J., Walia H.	Allelic variants of OsHKT1;1 underlie the divergence between indica and japonica subspecies of rice (Oryza sativa) for root sodium content.	PLoS Genet.	13(6)	e1006823	2017	HKT4	OsHKT4, OsHKT1;1, HKT1;1, OsHKT2, RNC4, OsHKT1;1-FL, OsHKT1;1-V1, OsHKT1;1-V2, OsHKT1;1-V3, OsHKT1;1-V4, OsHKT1;1-V5, OsHKT1;1-V6, OsHKT1;1-V7, OsHKT1;1-V8
44674	28607357	Guo L., Qiu F., Gandhi H., Kadaru S., De Asis EJ., Zhuang J., Xie F.	Genome-wide association study of outcrossing in cytoplasmic male sterile lines of rice.	Sci Rep	7(1)	3223	2017		
44675	28640934	Brazier-Hicks M., Gershater M., Dixon D., Edwards R.	Substrate specificity and safener inducibility of the plant UDP-glucose-dependent family 1 glycosyltransferase super-family.	Plant Biotechnol. J.			2017	BEL,UGT85E2,CYP76M7,CYP72A32,UGT75K1,UGT98B1,CYP709C9,UGT74H4,F5HL2,EDR1,CYP71AA3,CYP71E5,CYP71Y5,CYP71AA2,CYP71AK1,CYP734A2,GSTU15,GSTU1,UGT75E1,CYP72A18,UGT87C1,UGT72J2,UGT703A2,CYP71K9,CYP704A5,UGT84C1,UGT72F1,CYP71X12,GSTU5,CYP76M7,CYP51H5,GSTU18,GSTU10,GSTU24,_,_,CYP94C2,CYP71Y7,CYP71Z7,GSTU47,GSTU44,UGT710C2,UGT703A4,CYP87C2,CYP709C11,CYP89B4,CYP72A17,CYP71X14,CYP78C6,CYP72A19,GSTU52,GSTZ2,UGT701A1,GSTU35,GSTU12,GSTU39,GSTU19,SGT,CYP71K7,UGT703A1,UGT93B,CYP81A5,CYP71Z2,GSTU51,GSTU50,CYP709C5,CYP96B5,UGT99B3	bel, bel-a(8077S), bel-b(=bsl, Norin8m), CYP81A6, OsCYP81A6, OsCYP81Q32, CYP81Q32, OsCYP71U8, CYP71U8,,OsCYP76M7,OsCYP72A32,OsUGT75K1,OsUGT98B1,OsCYP709C9,OsUGT74H4, SGT1, OsSGT1, UGT74H12, OsUGT74H12,OsF5HL2, CYP84A6, OsCYP84A6, OsF5H1, F5H1, OsCYP71AB10, CYP71AB10,OsUGT84D1, UGT84D1, OsEDR1,OsCYP71AA3, OsCYP71AA1, CYP71AA1,OsCYP71E5, OsCYP71E1, CYP71E1,OsCYP71Y5, OsCYP71K5, CYP71K5,OsCYP71AA2,OsCYP71AK1, OsCYP71T11, CYP71T11,OsCYP734A2,OsGSTU15,OsGSTU1,OsUGT75E1,OsCYP72A18,OsUGT87C1,OsUGT72J2,OsUGT703A2,OsCYP71K9, T5H,OsCYP704A5,OsUGT84C1,,OsEnS-26, EnS-26, Os CYP71X12,OsGSTU5,OsCYP76M7, CYP76M10, OsCYP76M10, OsCYP76-4, CYP76-4,OsCYP51H5,OsGSTU18, OsGSTU7, GSTU7,OsGSTU10,OsGSTU24,OsGSTU3,OsGSTU4,OsCYP94C2, CYP94C2a, OsCYP94C2a,OsCYP71Y7,Oscyp71Z7, OsCYP71Z6, CYP71Z6,OsGSTU47,OsGSTU44,OsUGT710C2,,OsCYP87C2,OsCYP709C11,OsCYP89B4,OsCYP72A17,OsCYP71X14,OsCYP78C6,OsCYP72A19,OsGSTU52,OsGSTZ2, GSTZ-2,OsUGT701A1,OsGSTU35,OsGSTU12, OsGSTU6.2, GSTU6.2,OsGSTU39,OsGSTU19, GSTU6, OsGSTU6, OsGSTU6.1, GSTU6.1,OsSGT, UGT74H3, OsUGT74H3,OsCYP71K7,OsUGT703A1,OsUGT93B,OsCYP81A5, OsCYP71U7, CYP71U7,Oscyp71Z2,OsGSTU51,OsGSTU50,OsCYP709C5,OsCYP96B5,OsUGT98B3
44676	28634483	Samota M.K., Sasi M., Awana M., Yadav O.P., Amitha Mithra SV., Tyagi A., Kumar S., Singh A.	Elicitor-Induced Biochemical and Molecular Manifestations to Improve Drought Tolerance in Rice (Oryza sativa L.) through Seed-Priming.	Front Plant Sci	8	934	2017	ERF108,ERF1	OsAP2, OsERF#108, OsERF108, AP2/EREBP#001, AP2/EREBP1, RD2,Os06ERF, OsWR2, WR2, OsERF#001, OsERF001, OsERF1, AP2/EREBP#057, AP2/EREBP57, RD1, OsSHN, SHN
44677	28624908	Tan C.T., Yu H., Yang Y., Xu X., Chen M., Rudd J.C., Xue Q., Ibrahim A.M.H., Garza L., Wang S., Sorrells M.E., Liu S.	Development and validation of KASP markers for the greenbug resistance gene Gb7 and the Hessian fly resistance gene H32 in wheat.	Theor. Appl. Genet.			2017		
44678	28706525	Ramalingam J., Savitha P., Alagarasan G., Saraswathi R., Chandrababu R.	Functional Marker Assisted Improvement of Stable Cytoplasmic Male Sterile Lines of Rice for Bacterial Blight Resistance.	Front Plant Sci	8	1131	2017		
44679	28652621	Yang L., Han Y., Li P., Li F., Ali S., Hou M.	Silicon amendment is involved in the induction of plant defense responses to a phloem feeder.	Sci Rep	7(1)	4232	2017		
44680	28659945	Ghneim-Herrera T., Selvaraj M.G., Meynard D., Fabre D., Pe?a A., Ben Romdhane W., Ben Saad R., Ogawa S., Rebolledo M.C., Ishitani M., Tohme J., Al-Doss A., Guiderdoni E., Hassairi A.	Expression of the Aeluropus littoralis AlSAP Gene Enhances Rice Yield under Field Drought at the Reproductive Stage.	Front Plant Sci	8	994	2017	SODCC1,ZFP177,APX1	sodCc1, SODCC.1, sodA, RSODA, OsSOD1, OsCSD2, OsSodA, SodCc2, OsSODA1, SODCc1-Cu/Zn, OsCu/Zn-SOD2, Cu/Zn-SOD2, OsCSD1.2, CSD1.2, OsSODCc1-Cu/Zn, SODCc1-Cu/Zn, CuZnSOD1, Cu/ZnSOD1, OsCu/ZnSOD1, OsCSD4, CDS4, CuZnSOD4, OsCuZnSOD1, OsCSD1, CSD1, OsSOD2,OsSAP9, SAP9, ZFP33,OsAPX1, APXa, OsAPXa, OsAPx01, OsAPx1, OSAPX1, APx1, cAPX, APX2, cAPXa, OscAPXa
44681	28657614	Chen H., Zhao Z., Liu L., Kong W., Lin Y., You S., Bai W., Xiao Y., Zheng H., Jiang L., Li J., Zhou J., Tao D., Wan J.	Genetic analysis of a hybrid sterility gene that causes both pollen and embryo sac sterility in hybrids between Oryza sativa L. and Oryza longistaminata.	Heredity	119(3)	166-173	2017	_,S40,CSA	,,csa, OsCSA
44682	28597326	Volante A., Tondelli A., Aragona M., Valente M.T., Biselli C., Desiderio F., Bagnaresi P., Matic S., Gullino M.L., Infantino A., Spadaro D., Val? G.	Identification of bakanae disease resistance loci in japonica rice through genome wide association study.	Rice (N Y)	10(1)	29	2017		
44683	28666113	Li W., Zhu Z., Chern M., Yin J., Yang C., Ran L., Cheng M., He M., Wang K., Wang J., Zhou X., Zhu X., Chen Z., Wang J., Zhao W., Ma B., Qin P., Chen W., Wang Y., Liu J., Wang W., Wu X., Li P., Wang J., Zhu L., Li S., Chen X.	A Natural Allele of a Transcription Factor in Rice Confers Broad-Spectrum Blast Resistance.	Cell	170(1)	114-126.e15	2017	BSRD1,_,PRX128,MYBS1	ZFP36, OsZFP36, OsBSRD1, Bsr-d1, BSR-D1, DLN91, OsDLN91,prx69,prx128, OsPRX128, POD128, OsPOD128,OsMYBS1, Os-MYBS1, Mybs1
44684	28713404	Kumar M., Gho Y.S., Jung K.H., Kim S.R.	Genome-Wide Identification and Analysis of Genes, Conserved between japonica and indica Rice Cultivars, that Respond to Low-Temperature Stress at the Vegetative Growth Stage.	Front Plant Sci	8	1120	2017		
44685	28184437	Li L., Fang Z., Zhou J., Chen H., Hu Z., Gao L., Chen L., Ren S., Ma H., Lu L., Zhang W., Peng H.	An accurate and efficient method for large-scale SSR genotyping and applications.	Nucleic Acids Res.	45(10)	e88	2017		
44686	28659583	Paleari L., Movedi E., Confalonieri R.	Trait-based model development to support breeding programs. A case study for salt tolerance and rice.	Sci Rep	7(1)	4352	2017		
44687	28674278	Kubo T., Yoshimura A., Kurata N.	Genetic characterization and fine mapping of S25, a Hybrid male sterility gene, on rice chromosome 12.	Genes Genet. Syst.			2017		
44688	28690618	Surapaneni M., Balakrishnan D., Mesapogu S., Addanki K.R., Yadavalli V.R., Tripura Venkata VGN., Neelamraju S.	Identification of Major Effect QTLs for Agronomic Traits and CSSLs in Rice from Swarna/Oryza nivara Derived Backcross Inbred Lines.	Front Plant Sci	8	1027	2017		
44689	28659941	Das G., Patra J.K., Baek K.H.	Insight into MAS: A Molecular Tool for Development of Stress Resistant and Quality of Rice through Gene Stacking.	Front Plant Sci	8	985	2017		
44690	28649256	Singh N., Singh B., Rai V., Sidhu S., Singh A.K., Singh N.K.	Evolutionary Insights Based on SNP Haplotypes of Red Pericarp, Grain Size and Starch Synthase Genes in Wild and Cultivated Rice.	Front Plant Sci	8	972	2017		
44691	28676805	Awasthi S., Chauhan R., Srivastava S., Tripathi R.D.	The Journey of Arsenic from Soil to Grain in Rice.	Front Plant Sci	8	1007	2017		
44692	28592653	Raghavan C., Mauleon R., Lacorte V., Jubay M., Zaw H., Bonifacio J., Singh R.K., Huang B.E., Leung H.	Approaches in Characterizing Genetic Structure and Mapping in a Rice Multiparental Population.	G3 (Bethesda)	7(6)	1721-1730	2017		
44693	28647102	Wang L., Zhang Q.	Boosting Rice Yield by Fine-Tuning SPL Gene Expression.	Trends Plant Sci.	22(8)	643-646	2017		
44694	28637931	Goswami K., Tripathi A., Sanan-Mishra N.	Comparative miRomics of Salt-Tolerant and Salt-Sensitive Rice.	J Integr Bioinform	14(1)		2017		
44695	28554479	Chen M., Xie S., Ouyang Y., Yao J.	Rice PcG gene OsEMF2b controls seed dormancy and seedling growth by regulating the expression of OsVP1.	Plant Sci.	260	80-89	2017		
44696	28795104	Tan L.W., Tan C.S., Rahman Z.A., Goh H.H., Ismail I., Zainal Z.	Microarray dataset of transgenic rice overexpressing Abp57.	Data Brief	14	267-271	2017		
44697	28710664	Roy S., Chakraborty U.	Role of sodium ion transporters and osmotic adjustments in stress alleviation of Cynodon dactylon under NaCl treatment: a parallel investigation with rice.	Protoplasma			2017		
44698	28554480	Wang D., Wang Y., Long W., Niu M., Zhao Z., Teng X., Zhu X., Zhu J., Hao Y., Wang Y., Liu Y., Jiang L., Wang Y., Wan J.	SGD1, a key enzyme in tocopherol biosynthesis, is essential for plant development and cold tolerance in rice.	Plant Sci.	260	90-100	2017	VTE2	OsVTE2, SGD1, OsSGD1, RTD1, OsRTD1, OsHPT, HPT 
44699	28769961	Ko S.S., Li M.J., Lin Y.J., Hsing H.X., Yang T.T., Chen T.K., Jhong C.M., Ku M.S.	Tightly Controlled Expression of bHLH142 Is Essential for Timely Tapetal Programmed Cell Death and pollen Development in Rice.	Front Plant Sci	8	1258	2017	CYP704B2,TDF1,BHLH142,UDT1,MT2B,EAT1,GAMYB,RADC1,PTC1,AP37 ,MS2,CP1,RAG,TDR,C6,OSC4	OsCYP704B2,OsTDF1, MYB35, OsMYB35,OsbHLH142, bHLH142, TIP2, OsTIP2, TIP2/TDR/bHLH142,Udt1, bHLH164, OsUDT1, OsbHLH164 ,OsMT2b, MT2b, OsMT-I-2c, MT-I-2c, MT2C, MT2BL, OsMT2C, OsMT2BL, MTE, OsMT2b1, OsMT2b2, MT2b1, MT2b2, MTb, met1, OsMTe, OsMT-I-2c, OsB22EL8, MTe, MT-I-2c, B22EL8,OsEAT1, OsbHLH141, EAT1/DTD1, bHLH141, DTD1, DTD, DLN120, OsDLN120,OsGAMYB, GAM1, OsGAMyb, Os-MYBGA, Os GAMYB, OsMYBGA, MYBGA, Os2R_MYB15, 2R_MYB15 ,OsAP25, Radc1, OsRADC1, AP25,OsMS1, tms9-1, OsPTC1, MS1, TMS9-1, OsTMS9-1,OsAP37,OsMS2, OsDPW, DPW, DPW1, OsDPW1, OsFAR2, FAR2,OsCP1, Os CP1,MADS3, OsMADS3, OsMADS3(t), RMADS222, RAG1, rf3,tdr, OsbHLH005, bHLH005, OsbHLH5, bhlh5, TDR1, OsTDR, OsTDR1, OsMYC5, MYC5,Osc6, Osg6B, OsG6B, OsLTPG25, OsLTPg25, OsLtpVII.1, Os C6,Osc4, OsC4, Osg4B, OsLTPc1, OsLtpIII.1, C4
44700	28818384	Ribeiro C.W., Korbes A.P., Garighan J.A., Jardim-Messeder D., Carvalho F.E.L., Sousa R.H.V., Caverzan A., Teixeira F.K., Silveira J.A.G., Margis-Pinheiro M.	Rice peroxisomal ascorbate peroxidase knockdown affects ROS signaling and triggers early leaf senescence.	Plant Sci.	263	55-65	2017		
44701	28730413	Feng X., Wang C., Nan J., Zhang X., Wang R., Jiang G., Yuan Q., Lin S.	Updating the elite rice variety Kongyu 131 by improving the Gn1a locus.	Rice (N Y)	10(1)	35	2017		
44702	28723953	Zhu Q., Yu S., Chen G., Ke L., Pan D.	Analysis of the differential gene and protein expression profile of the rolled leaf mutant of transgenic rice (Oryza sativa L.).	PLoS ONE	12(7)	e0181378	2017		
44703	28812021	Li X., Hu B., Pan X., Zhang N., Wu D.	Association Analysis of Arsenic-Induced Straighthead in Rice (Oryza sativa L.) Based on the Selected Population with a Modified Model.	Biomed Res Int	2017	7641362	2017		
44704	28717360	Nguyen H.M., Sako K., Matsui A., Suzuki Y., Mostofa M.G., Ha C.V., Tanaka M., Tran L.P., Habu Y., Seki M.	Ethanol Enhances High-Salinity Stress Tolerance by Detoxifying Reactive Oxygen Species in Arabidopsis thaliana and Rice.	Front Plant Sci	8	1001	2017		
44705	28687785	Mei J., Wang W., Peng S., Nie L.	Seed Pelleting with Calcium Peroxide Improves Crop Establishment of Direct-seeded Rice under Waterlogging Conditions.	Sci Rep	7(1)	4878	2017		
44706	28762322	Lim D.K., Long N.P., Mo C., Dong Z., Lim J., Kwon S.W.	Optimized Mass Spectrometry-Based Metabolite Extraction and Analysis for the Geographical Discrimination of White Rice (Oryza sativa L.): A Method Comparison Study.	J AOAC Int			2017		
44707	28526728	Yang L., Wu Y., Wang W., Mao B., Zhao B., Wang J.	Genetic Subtraction Profiling Identifies Candidate miRNAs Involved in Rice Female Gametophyte Abortion.	G3 (Bethesda)	7(7)	2281-2293	2017		
44708	28719243	Mgonja E.M., Park C.H., Kang H., Balimponya E.G., Opiyo S., Bellizzi M., Mutiga S.K., Rotich F., Ganeshan V.D., Mabagala R., Sneller C., Correll J., Zhou B., Talbot N.J., Mitchell T.K., Wang G.L.	Genotyping-by-Sequencing-Based Genetic Analysis of African Rice Cultivars and Association Mapping of Blast Resistance Genes Against Magnaporthe oryzae Populations in Africa.	Phytopathology	107(9)	1039-1046	2017		
44709	28687802	Zhu Y.J., Fan Y.Y., Wang K., Huang D.R., Liu W.Z., Ying J.Z., Zhuang J.Y.	Rice Flowering Locus T 1 plays an important role in heading date influencing yield traits in rice.	Sci Rep	7(1)	4918	2017		
44710	28753622	Wang Q., Han N., Dang C., Lu Z., Wang F., Yao H., Peng Y., Stanley D., Ye G.	Combined influence of Bt rice and rice dwarf virus on biological parameters of a non-target herbivore, Nephotettix cincticeps (Uhler) (Hemiptera: Cicadellidae).	PLoS ONE	12(7)	e0181258	2017		
44711	28746886	Guo L., Xiao Y., Zhu C., Wang S., Du X., Cui B.	In vitro enzymatic hydrolysis of amylopectins from rice starches.	Int. J. Biol. Macromol.			2017		
44712	28755293	Cao J., Yu Y., Huang J., Liu R., Chen Y., Li S., Liu J.	Genome re-sequencing analysis uncovers pathogenecity-related genes undergoing positive selection in Magnaporthe oryzae.	Sci China Life Sci	60(8)	880-890	2017		
44713	28687080	Thieme M., Lanciano S., Balzergue S., Daccord N., Mirouze M., Bucher E.	Inhibition of RNA polymerase II allows controlled mobilisation of retrotransposons for plant breeding.	Genome Biol.	18(1)	134	2017		
44714	28727805	Wada H., Masumoto-Kubo C., Tsutsumi K., Nonami H., Tanaka F., Okada H., Erra-Balsells R., Hiraoka K., Nakashima T., Hakata M., Morita S.	Turgor-responsive starch phosphorylation in Oryza sativa stems: A primary event of starch degradation associated with grain-filling ability.	PLoS ONE	12(7)	e0181272	2017	GWD1,BAMY1,AMY2A,SBE1,SSIIB,GBSSII	OsGWD1,OsSTA246, STA246, OsBamy1, Bamy1, BAM2, OsBAM2, OsBmy9, Bmy9, BMY5, OsBMY5,Amy2A*(RAmy2A), AMY1.5, AMYC2, RAmy2A, Amy4, Amy2A,sbe1, Rbe1. Sbe1, sbe1*(QEI), RBE1, BEI, SBE I, QEI, OsBEI, BE1, OsSBE1, OsSBEI, SBEI,OsSSIIb, OsSSII-2, SSII-2, SS2, OsSSSIIb, SS2b,GBSS2, OsGBSSII, OsGBSS2
44715	28761150	Singh S.P., Gruissem W., Bhullar N.K.	Single genetic locus improvement of iron, zinc and beta-carotene content in rice grains.	Sci Rep	7(1)	6883	2017		
44716	28670755	Nieves-Cordones M., Mohamed S., Tanoi K., Kobayashi N.I., Takagi K., Vernet A., Guiderdoni E., P?rin C., Sentenac H., V?ry AA.	Production of low-Cs(+) rice plants by inactivation of the K(+) transporter OsHAK1 with the CRISPR-Cas system.	Plant J.			2017		
44717	28677082	Lee S.Y., Kim Y.H., Lee G.S.	Mapping QTLs associated to germination stability following dry-heat treatment in rice seed.	3 Biotech	7(3)	220	2017		
44718	28729614	Zhang Z., Teng X., Ma W., Li F.	Knockdown of two Cadherin genes confers resistance to Cry2A and Cry1C in Chilo suppressalis.	Sci Rep	7(1)	5992	2017		
44719	28686687	Li S., Zuo Q., Wang X., Ma W., Jin X., Shi J., Ben-Gal A.	Characterizing roots and water uptake in a ground cover rice production system.	PLoS ONE	12(7)	e0180713	2017		
44720	28678349	Zhang D., Wu S., An X., Xie K., Dong Z., Zhou Y., Xu L., Fang W., Liu S., Liu S., Zhu T., Li J., Rao L., Zhao J., Wan X.	Construction of a multicontrol sterility system for a maize male-sterile line and hybrid seed production based on the ZmMs7 gene encoding a PHD-finger transcription factor.	Plant Biotechnol. J.			2017		
44721	28701756	Ogawa T., Kashima K., Yuki Y., Mejima M., Kurokawa S., Kuroda M., Okazawa A., Kiyono H., Ohta D.	Seed Metabolome Analysis of a Transgenic Rice Line Expressing cholera toxin B-subunit.	Sci Rep	7(1)	5196	2017		
44722	28680100	Zhan X., Shen Q., Wang X., Hong Y.	The Sulfoquinovosyltransferase-like Enzyme SQD2.2 is Involved in Flavonoid Glycosylation, Regulating Sugar Metabolism and Seed Setting in Rice.	Sci Rep	7(1)	4685	2017	PLS2,SQD2.2,SQD2.1	SQD2.3, OsSQD2.3,OsSQD2, SQD2, OsSQD2.2,OsSQD2.1
44723	28710280	Myrach T., Zhu A., Witte C.P.	The assembly of the plant Urease activation complex and the essential role of the Urease accessory protein G (UreG) in delivery of nickel to Urease.	J. Biol. Chem.	292(35)	14556-14565	2017		
44724	28710485	Zhang Z., Hu W., Shen G., Liu H., Hu Y., Zhou X., Liu T., Xing Y.	Alternative functions of Hd1 in repressing or promoting heading are determined by Ghd7 status under long-day conditions.	Sci Rep	7(1)	5388	2017		
44725	28738551	Zahoor, Sun D., Li Y., Wang J., Tu Y., Wang Y., Hu Z., Zhou S., Wang L., Xie G., Huang J., Alam A., Peng L.	Biomass saccharification is largely enhanced by altering wall polymer features and reducing silicon accumulation in rice cultivars harvested from nitrogen fertilizer supply.	Bioresour. Technol.	243	957-965	2017		
44726	28818376	Takaiwa F., Wakasa Y., Hayashi S., Kawakatsu T.	An overview on the strategies to exploit rice endosperm as production platform for biopharmaceuticals.	Plant Sci.	263	201-209	2017		
44727	28870292	Thapa S., Prasanna R., Ranjan K., Velmourougane K., Ramakrishnan B.	Nutrients and host attributes modulate the abundance and functional traits of phyllosphere microbiome in rice.	Microbiol. Res.	204	55-64	2017		
44728	28733852	Gan L., Zhu S., Zhao Z., Liu L., Wang X., Zhang Z., Zhang X., Wang J., Wang J., Guo X., Wan J.	Wax Crystal-Sparse Leaf 4, encoding a beta-ketoacyl-coenzyme A synthase 6, is involved in rice cuticular wax accumulation.	Plant Cell Rep.			2017	HMS1	CER6/CUT1, CER6, CUT1, OsCER6, WSL4, KCS6, OsKCS6, CER6/CUT1/KCS6, OsHMS1, OsKCS8, KCS8
44729	28686018	Chang T., Li W., Ding Z., Cheng S., Liang K., Liu X., Bing T., Shangguan D.	Detection of G-Quadruplex Structures Formed by G-Rich Sequences from Rice Genome and Transcriptome Using Combined Probes.	Anal. Chem.	89(15)	8162-8169	2017		
44730	28682500	Zhang J., Yin K., Sun J., Gao J., Du Q., Li H., Qiu J.L.	Direct and tunable modulation of protein levels in rice and wheat with a synthetic small molecule.	Plant Biotechnol. J.			2017		
44731	28744302	Wu M., Li G., Li W., Liu J., Liu M., Jiang C., Li Z.	Nitrogen Fertilizer Deep Placement for Increased grain yield and Nitrogen Recovery Efficiency in Rice Grown in Subtropical China.	Front Plant Sci	8	1227	2017		
44732	28740253	Xu H.X., He X.C., Zheng X.S., Zhou X.J., Lin Y.J., Lu Z.X.	Effects of Transgenic Rice Infected with SRBSDV on Bt expression and the Ecological Fitness of Non-vector Brown Planthopper Nilaparvata lugens.	Sci Rep	7(1)	6328	2017		
44733	28747923	Jiang N., Shi S., Shi H., Khanzada H., Wassan G.M., Zhu C., Peng X., Yu Q., Chen X., He X., Fu J., Hu L., Xu J., Ouyang L., Sun X., Zhou D., He H., Bian J.	Mapping QTL for Seed Germinability under low temperature Using a New High-Density Genetic Map of Rice.	Front Plant Sci	8	1223	2017		
44734	28818380	Yan S., Li S., Zhai G., Lu P., Deng H., Zhu S., Huang R., Shao J., Tao Y., Zou G.	Molecular cloning and expression analysis of duplicated Polyphenol oxidase genes reveal their functional differentiations in sorghum.	Plant Sci.	263	23-30	2017		
44735	28754953	Yang X., Li L., Jiang X., Wang W., Cai X., Su J., Wang F., Lu B.R.	Genetically engineered rice endogenous 5-enolpyruvoylshikimate-3-phosphate synthase (EPSPS) transgene alters phenology and fitness of crop-wild hybrid offspring.	Sci Rep	7(1)	6834	2017		
44736	28838125	Xu Y., Liu S., Liu Y., Ling S., Chen C., Yao J.	HOTHEAD-Like HTH1 is Involved in Anther Cutin Biosynthesis and is Required for pollen Fertility in Rice.	Plant Cell Physiol.	58(7)	1238-1248	2017	_,_,ONI3,NP1 ,_,_,HTH1	,,OsONI3,OS-ACE, OsNP1, OsTMS18, TMS18,,,OsHTH1
44737	28743949	Sun W., Hui Xu X., Lu X., Xie L., Bai B., Zheng C., Sun H., He Y., Xie X.Z.	The Rice Phytochrome Genes, PHYA and phyB, Have Synergistic Effects on Anther Development and pollen Viability.	Sci Rep	7(1)	6439	2017		
44738	28680066	Zhaolei L., Naishun B., Jun C., Xueping C., Manqiu X., Feng W., Zhiping S., Changming F.	Effects of long-term cultivation of transgenic Bt rice (Kefeng-6) on soil microbial functioning and C cycling.	Sci Rep	7(1)	4647	2017		
44739	28683715	Schmidt M., Van Bel M., Woloszynska M., Slabbinck B., Martens C., De Block M., Coppens F., Van Lijsebettens M.	Plant-RRBS, a bisulfite and next-generation sequencing-based methylome profiling method enriching for coverage of cytosine positions.	BMC Plant Biol.	17(1)	115	2017		
44740	28621888	Huang K., Wang D., Duan P., Zhang B., Xu R., Li N., Li Y.	WIDE AND THICK GRAIN 1, which encodes an otubain-like protease with deubiquitination activity, influences grain size and shape in rice.	Plant J.	91(5)	849-860	2017	WTG1	OTUB1, OsOTUB1, OsOTUB1.1, OsOTUB1.2, qNPT1, OsWTG1
44741	28678533	Lin S., Yang T., Zhu S., Wang J., Ni W.	A method for screening copper tolerant rice (Oryza sativa L.) cultivars based on hydroponic experiments and cluster analysis.	Int J Phytoremediation		0	2017		
44742	28710696	Lee H.S., Sasaki K., Kang J.W., Sato T., Song W.Y., Ahn S.N.	Mesocotyl Elongation is Essential for Seedling Emergence Under Deep-Seeding Condition in Rice.	Rice (N Y)	10(1)	32	2017		
44743	28674938	Valdameri G., Alberton D., Moure V.R., Kokot T.B., Kukolj C., Brusamarello-Santos LCC., Monteiro R.A., Pedrosa F.O., de Souza EM.	Herbaspirillum rubrisubalbicans, a mild pathogen impairs growth of rice by augmenting ethylene levels.	Plant Mol. Biol.	94(6)	625-640	2017		
44744	28730412	Zhou Y., Tao Y., Zhu J., Miao J., Liu J., Liu Y., Yi C., Yang Z., Gong Z., Liang G.	GNS4, a novel allele of DWARF11, regulates grain number and grain size in a high-yield rice variety.	Rice (N Y)	10(1)	34	2017	D11	d11(d8), dwf10, d8, D11/CYP724B1, d11, CYP724B1, GNS4, OsD11, PMM1, OsPMM1, PMM1/D11, NBG4, OsCPB1, CPB1, CPB1/D11
44745	28798764	Lou Q., Chen L., Mei H., Xu K., Wei H., Feng F., Li T., Pang X., Shi C., Luo L., Zhong Y.	Root Transcriptomic Analysis Revealing the Importance of Energy Metabolism to the Development of Deep Roots in Rice (Oryza sativa L.).	Front Plant Sci	8	1314	2017		
44746	28791031	Feng H., Chen G., Xiong L., Liu Q., Yang W.	Accurate Digitization of the Chlorophyll Distribution of Individual Rice Leaves Using Hyperspectral Imaging and an Integrated Image Analysis Pipeline.	Front Plant Sci	8	1238	2017		
44747	28775736	Das G., Patra J.K., Baek K.H.	Corrigendum: Insight into MAS: A Molecular Tool for Development of Stress Resistant and Quality of Rice through Gene Stacking.	Front Plant Sci	8	1321	2017		
44748	28680158	Rashid M.M., Ahmed N., Jahan M., Islam K.S., Nansen C., Willers J.L., Ali M.P.	Higher Fertilizer Inputs Increase Fitness Traits of Brown Planthopper in Rice.	Sci Rep	7(1)	4719	2017		
44749	28643516	Navarro-Reig M., Jaumot J., Baglai A., Viv?-Truyols G., Schoenmakers P.J., Tauler R.	Untargeted Comprehensive Two-Dimensional Liquid Chromatography Coupled with High-Resolution Mass Spectrometry Analysis of Rice Metabolome Using Multivariate Curve Resolution.	Anal. Chem.	89(14)	7675-7683	2017		
44750	28718009	Omisun T., Sahoo S., Saha B., Panda S.K.	Relative salinity tolerance of rice cultivars native to North East India: a physiological, biochemical and molecular perspective.	Protoplasma			2017		
44751	28758833	Yu M., Yau C.P., Yip W.K.	The Differentiated Localized Rice Ethylene Receptors OsERS1 and OsETR2 and their Potential Role during Submergence.	Plant Signal Behav		0	2017		
44752	28744298	Landi S., Hausman J.F., Guerriero G., Esposito S.	Poaceae vs. Abiotic Stress: Focus on Drought and Salt Stress, Recent Insights and Perspectives.	Front Plant Sci	8	1214	2017		
44753	28688359	Zhang L., Yang Q., Wang S., Li W., Jiang S., Liu Y.	Influence of silicon treatment on antimony uptake and translocation in rice genotypes with different radial oxygen loss.	Ecotoxicol. Environ. Saf.	144	572-577	2017		
44754	28751884	Esquivel B.D., White T.C.	Accumulation of Azole Drugs in the Fungal Plant Pathogen Magnaporthe oryzae Is the Result of Facilitated Diffusion Influx.	Front Microbiol	8	1320	2017		
44755	28758876	Ueno Y., Matsushita A., Inoue H., Yoshida R., Jiang C.J., Takatsuji H.	WRKY45 phosphorylation at threonine 266 acts negatively on WRKY45-dependent blast resistance in rice.	Plant Signal Behav		0	2017		
44756	28769823	Zhu X.F., Zhao X.S., Wang B., Wu Q., Shen R.F.	Elevated Carbon Dioxide Alleviates Aluminum Toxicity by Decreasing Cell Wall Hemicellulose in Rice (Oryza sativa).	Front Physiol	8	512	2017		
44757	28724910	Guzman M.K., Parween S., Butardo V.M., Alhambra C.M., Anacleto R., Seiler C., Bird A.R., Chow C.P., Sreenivasulu N.	Investigating glycemic potential of rice by unraveling compositional variations in mature grain and starch mobilization patterns during seed germination.	Sci Rep	7(1)	5854	2017		
44758	28702689	Auler P.A., do Amaral MN., Rodrigues G.D.S., Benitez L.C., da Maia LC., Souza G.M., Braga E.J.B.	Molecular responses to recurrent drought in two contrasting rice genotypes.	Planta			2017		
44759	28686596	Li X., Guo Z., Lv Y., Cen X., Ding X., Wu H., Li X., Huang J., Xiong L.	Genetic control of the root system in rice under normal and drought stress conditions by genome-wide association study.	PLoS Genet.	13(7)	e1006889	2017		
44760	28705931	Wagner R.H., Savir-Baruch B., Halama J.R., Venu M., Gabriel M.S., Bova D.	Proof of Concept: Design and Initial Evaluation of a Device to Measure Gastrointestinal Transit Time.	J Nucl Med Technol	45(3)	230-235	2017		
44761	28747889	Dorairaj D., Ismail M.R.	Distribution of Silicified Microstructures, Regulation of Cinnamyl Alcohol Dehydrogenase and Lodging Resistance in Silicon and Paclobutrazol Mediated Oryza sativa.	Front Physiol	8	491	2017		
44762	28725262	Biswal A.K., Tan L., Atmodjo M.A., DeMartini J., Gelineo-Albersheim I., Hunt K., Black I.M., Mohanty S.S., Ryno D., Wyman C.E., Mohnen D.	Comparison of four glycosyl residue composition methods for effectiveness in detecting sugars from cell walls of dicot and grass tissues.	Biotechnol Biofuels	10	182	2017		
44763	28775730	Pang Y., Chen K., Wang X., Wang W., Xu J., Ali J., Li Z.	Simultaneous Improvement and Genetic Dissection of salt tolerance of Rice (Oryza sativa L.) by Designed QTL Pyramiding.	Front Plant Sci	8	1275	2017		
44764	28861103	Wang S., Cao M., Ma X., Chen W., Zhao J., Sun C., Tan L., Liu F.	Integrated RNA Sequencing and QTL Mapping to Identify Candidate Genes from Oryza rufipogon Associated with salt tolerance at the Seedling Stage.	Front Plant Sci	8	1427	2017		
44765	28809396	Song X., Lu Z., Yu H., Shao G., Xiong J., Meng X., Jing Y., Liu G., Xiong G., Duan J., Yao X.F., Liu C.M., Li H., Wang Y., Li J.	IPA1 functions as a downstream transcription factor repressed by D53 in strigolactone signaling in rice.	Cell Res.	27(9)	1128-1141	2017	D53,WFP	D53(D K3), DK3, Dwf34, SMXL6/7/8, OsD53,OsSPL14, SPL14, IPA1, WFP/IPA1, OsSPL14/WFP/IPA1, OsIPA1,  IPA1/OsSPL14
44766	28802080	Sun Y., Wu Y., Yang C., Sun S., Lin X., Liu L., Xu C., Wendel J.F., Gong L., Liu B.	Segmental allotetraploidy generates extensive homeologous expression rewiring and phenotypic diversity at the population level in rice.	Mol. Ecol.			2017		
44767	28868059	Huang L.Y., Lin C.W., Lee R.H., Chiang C.Y., Wang Y.C., Chang C.H., Huang H.J.	Integrating Early Transcriptomic Responses to Rhizotoxins in Rice (Oryza sativa. L.) Reveals Key Regulators and a Potential Early Biomarker of Cadmium Toxicity.	Front Plant Sci	8	1432	2017		
44768	28810845	Park D., Park S.H., Ban Y.W., Kim Y.S., Park K.C., Kim N.S., Kim J.K., Choi I.Y.	A bioinformatics approach for identifying transgene insertion sites using whole genome sequencing data.	BMC Biotechnol.	17(1)	67	2017		
44769	28848243	Liu C., Cheng Y.J., Wang J.W., Weigel D.	Prominent topologically associated domains differentiate global chromatin packing in rice from Arabidopsis.	Nat Plants			2017		
44770	28861102	Zhang J., Chen L., Fu C., Wang L., Liu H., Cheng Y., Li S., Deng Q., Wang S., Zhu J., Liang Y., Li P., Zheng A.	Comparative Transcriptome Analyses of Gene Expression Changes Triggered by Rhizoctonia solani AG1 IA Infection in Resistant and Susceptible Rice Varieties.	Front Plant Sci	8	1422	2017		
44771	28841500	Lin L., Gao M., Qiu W., Wang D., Huang Q., Song Z.	Reduced arsenic accumulation in indica rice (Oryza sativa L.) cultivar with ferromanganese oxide impregnated biochar composites amendments.	Environ. Pollut.	231(Pt 1)	479-486	2017		
44772	28805257	Li G., Li X., Wang Y., Mi J., Xing F., Zhang D., Dong Q., Li X., Xiao J., Zhang Q., Ouyang Y.	Three representative inter and intra-subspecific crosses reveal the genetic architecture of reproductive isolation in rice.	Plant J.			2017		
44773	28815858	Akimoto-Tomiyama C., Tanabe S., Kajiwara H., Minami E., Ochiai H.	Loss of chloroplast localized protein phosphatase 2Cs in Arabidopsis thaliana leads to enhancement of the plant immunity and resistance to Xanthomonas campestris pv. campestris infection.	Mol. Plant Pathol.			2017		
44774	28863212	Zhou K., Xia J., Wang Y., Ma T., Li Z.	A Young Seedling stripe2 phenotype in rice is caused by mutation of a chloroplast-localized nucleoside diphosphate kinase 2 required for chloroplast biogenesis.	Genet. Mol. Biol.		0	2017	YSS2,NDPK1,NDPK3	OsNDPK2, NDPK2, BIP114,OsNDPK1, NDK, rNDK, NDK1, NDKR, NDK-1,OsNDPK3
44775	28785299	Cao Z., Mou R., Cao Z., Lin X., Ma Y., Zhu Z., Chen M.	Quantitation of glutathione S-transferases in rice (Oryza sativa L.) roots exposed to cadmium by liquid chromatography-tandem mass spectrometry using isotope-labeled wing peptides as an internal standard.	Plant Methods	13	64	2017		
44776	28861736	Prahalada G.D., Shivakumar N., Lohithaswa H.C., Sidde Gowda DK., Ramkumar G., Kim S.R., Ramachandra C., Hittalmani S., Mohapatra T., Jena K.K.	Identification and fine mapping of a new gene, BPH31 conferring resistance to brown planthopper biotype 4 of India to improve rice, Oryza sativa L.	Rice (N Y)	10(1)	41	2017	BPH31	Bph31
44777	28821602	Li G., Wu Y., Liu G., Xiao X., Wang P., Gao T., Xu M., Han Q., Wang Y., Guo T., Kang G.	Large-scale proteomics combined with transgenic experiments demonstrates an important role of jasmonic acid&nbsp;in potassium&nbsp;deficiency response in wheat and rice.	Mol. Cell Proteomics			2017	AOS2	OsAOS2, CYP74A2, OsAOS, OsAOS1
44778	28843766	Van De Velde K., Ruelens P., Geuten K., Rohde A., Van Der Straeten D.	Exploiting DELLA Signaling in Cereals.	Trends Plant Sci.			2017		
44779	28843203	Chen Z., Tang Y.T., Yao A.J., Cao J., Wu Z.H., Peng Z.R., Wang S.Z., Xiao S., Baker A.J.M., Qiu R.L.	Mitigation of Cd accumulation in paddy rice (Oryza sativa L.) by Fe fertilization.	Environ. Pollut.	231(Pt 1)	549-559	2017		
44780	28766258	Inoue H., Nakamura M., Mizubayashi T., Takahashi A., Sugano S., Fukuoka S., Hayashi N.	Panicle blast 1 (Pb1) resistance is dependent on at least four QTLs in the rice genome.	Rice (N Y)	10(1)	36	2017		
44781	28848592	Lee G.A., Jeon Y.A., Lee H.S., Hyun D.Y., Lee J.R., Lee M.C., Lee S.Y., Ma K.H., Koh H.J.	New Genetic Loci Associated with Preharvest Sprouting and Its Evaluation Based on the Model Equation in Rice.	Front Plant Sci	8	1393	2017		
44782	28677493	Wang X., Jia Y., Wamishe Y., Jia M.H., Valent B.	Dynamic Changes in the Rice Blast Population in the United States Over Six Decades.	Mol. Plant Microbe Interact.		MPMI04170101R	2017		
44783	28805492	Sakuraba Y., Kim E.Y., Paek N.C.	Roles of rice PHYTOCHROME-Interacting Factor-Like1 (OsPIL1) in leaf senescence.	Plant Signal Behav		0	2017		
44784	28841686	Kim J., Lee H.J., Jung Y.J., Kang K.K., Tyagi W., Kovach M., Sweeney M., McCouch S., Cho Y.G.	Functional properties of an alternative, tissue-specific promoter for rice NADPH-dependent dihydroflavonol reductase.	PLoS ONE	12(8)	e0183722	2017		
44785	28790353	Tiwari I.M., Jesuraj A., Kamboj R., Devanna B.N., Botella J.R., Sharma T.R.	Host Delivered RNAi, an efficient approach to increase rice resistance to sheath blight pathogen (Rhizoctonia solani).	Sci Rep	7(1)	7521	2017		
44786	28821745	Daygon V.D., Calingacion M., Forster L.C., Voss J.J., Schwartz B.D., Ovenden B., Alonso D.E., McCouch S.R., Garson M.J., Fitzgerald M.A.	Metabolomics and genomics combine to unravel the pathway for the presence of fragrance in rice.	Sci Rep	7(1)	8767	2017		
44787	28555318	Wang L., Dong Q., Zhu Q., Tang N., Jia S., Xi C., Zhao H., Han S., Wang Y.	Conformational Characteristics of Rice Hexokinase OsHXK7 as a Moonlighting Protein involved in Sugar Signalling and Metabolism.	Protein J.	36(4)	249-256	2017		
44788	28762002	Khalili Ghadikolaei K., Akbari Noghabi K., Shahbani Zahiri H.	Development of a bifunctional xylanase-cellulase chimera with enhanced activity on rice and barley straws using a modular xylanase and an endoglucanase procured from camel rumen metagenome.	Appl. Microbiol. Biotechnol.			2017		
44789	28825710	Panja S., Hua B., Zegarra D., Ha T., Woodson S.A.	Metals induce transient folding and activation of the twister ribozyme.	Nat. Chem. Biol.			2017		
44790	28637286	Ritchey L.E., Su Z., Tang Y., Tack D.C., Assmann S.M., Bevilacqua P.C.	Structure-seq2: sensitive and accurate genome-wide profiling of RNA structure in vivo.	Nucleic Acids Res.	45(14)	e135	2017		
44791	28789632	Zhang Z., Li X., Cui L., Meng S., Ye N., Peng X.	Catalytic and functional aspects of different isozymes of Glycolate oxidase in rice.	BMC Plant Biol.	17(1)	135	2017		
44792	28855911	Zarei A., Brikis C.J., Bajwa V.S., Chiu G.Z., Simpson J.P., DeEll J.R., Bozzo G.G., Shelp B.J.	Plant Glyoxylate/Succinic Semialdehyde Reductases: Comparative Biochemical Properties, Function during Chilling Stress, and Subcellular Localization.	Front Plant Sci	8	1399	2017	GLYR2,GLYR1	OsGLYR2, OsGR2, GR2,OsGLYR1, OsGR1, GR1
44793	28871266	Yadav S., Singh U.M., Naik S.M., Venkateshwarlu C., Ramayya P.J., Raman K.A., Sandhu N., Kumar A.	Molecular Mapping of QTLs Associated with Lodging Resistance in Dry Direct-Seeded Rice (Oryza sativa L.).	Front Plant Sci	8	1431	2017		
44794	28821860	Kumar N., Dubey A.K., Upadhyay A.K., Gautam A., Ranjan R., Srikishna S., Sahu N., Behera S.K., Mallick S.	GABA accretion reduces Lsi-1 and Lsi-2 gene expressions and modulates physiological responses in Oryza sativa to provide tolerance towards arsenic.	Sci Rep	7(1)	8786	2017		
44795	28695678	Salt D.E.	Would the real arsenate reductase please stand up?	New Phytol.	215(3)	926-928	2017		
44796	28829777	Qin H., Zhang Z., Wang J., Chen X., Wei P., Huang R.	The activation of OsEIL1 on YUC8 transcription and auxin biosynthesis is required for ethylene-inhibited root elongation in rice early seedling development.	PLoS Genet.	13(8)	e1006955	2017	EIL1,COW1	OsEIL1, EIN3, OsEIN3, MHZ6, OsEIL1a, EIL1a, OsEIL1b, EIL1b,OsCOW1, oscow1, OsYUC8, YUC8, NAL7, OsNAL7, OsYUCCA8, YUCCA8, FMO, OsFMO(t), REIN7, YUC8/REIN7
44797	28814283	Li Q., Yang A., Zhang W.H.	Comparative studies on tolerance of rice genotypes differing in their tolerance to moderate salt stress.	BMC Plant Biol.	17(1)	141	2017		
44798	28843032	Meng Q., Li X., Zhu W., Yang L., Liang W., Dreni L., Zhang D.	Regulatory network and genetic interactions established by OsMADS34 in rice inflorescence and spikelet morphogenesis.	J Integr Plant Biol			2017		
44799	28832544	Zhao W., Cheng Y.H., Zhang C., Shen X.J., You Q.B., Guo W., Li X., Song X.J., Zhou X.A., Jiao Y.Q.	Genome-Wide Identification and Characterization of the GmSnRK2 Family in Soybean.	Int J Mol Sci	18(9)		2017		
44800	28853048	Zhou H., Xia D., Zeng J., Jiang G., He Y.	Dissecting combining ability effect in a rice NCII-III population provides insights into heterosis in indica-japonica cross.	Rice (N Y)	10(1)	39	2017	DEP1,S5,GHD7,SD1,HD5	OsDEP1, EP, qPE9-1, DN1, DEP1/DN1/qPE9-1, qNGR9, qDEP1, RGG4/DEP1/DN1/qPE9-1/OsGGC3, RGG4, OsDN1, OsGGC3, GGC3,S5-3, S5-4,Ghd2, Ghd7, OsGhd7, OsCCT26, OsCMF8, OsI, Ghd7/Hd4, Hd4, EH7-1/Hd4, Ghd7-0a, EH7-1, EH7/Ghd7, EH7, OsEH7, GLW7.1, OsGLW7.1,sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2, OsPHQ1, OsPHq1, PHq1,Hd5(t)*, Hd5, qHD5, HAP3H, OsHAP3H, NF-YB, CBF-A, DTH8 , qHD5(t)*, Ghd8, Ghd8/DTH8, Lhd1, NF-YB11, OsNF-YB11, NFYB11, LH8, DTH8/Ghd8, RH8, DTH8/Ghd8/LHD1, CAR8, DTH8/Ghd8/ OsHAP3H, EF8, OsEF8
44801	28871269	Chen Z., Cheng Q., Hu C., Guo X., Chen Z., Lin Y., Hu T., Bellizzi M., Lu G., Wang G.L., Wang Z., Chen S., Wang F.	A Chemical-Induced, Seed-Soaking Activation Procedure for Regulated Gene Expression in Rice.	Front Plant Sci	8	1447	2017		
44802	28857351	Ma H., Chen J., Zhang Z., Ma L., Yang Z., Zhang Q., Li X., Xiao J., Wang S.	MAPK kinase 10.2 Promotes Disease Resistance and drought tolerance by Activating Different MAPKs in rice.	Plant J.			2017	MSRMK2,MKK10-1,DSG1,MKK10-2,MKK10-3	OsMSRMK2, OsMAPK5, OsMAP1, OsMPK3, OsBIMK1, OsMAPK2, MPK5, BIMK1, MAPK2, MAPK5, MPK3, OsMPK5, OsMAPK3, OsMAPK5b, MAPK3,OsMKK10-1, MPKK10.1 ,OsMAPK6, MAPK6, OsMPK6, OsSIPK, SIPK, OsMAPK1, MAPK1, MPK1, OsMPK1, MPK6, OsDSG1,OsMKK10-2, MKK10-2D, OsMPKK10-2, MPKK10-2, OsMKK10.2, MKK10.2, OsMPKK10-2D, MPKK10-2D, MPKK10.2, OsMAPKK10-2, MAPKK10-2, OsMEK3. MEK3,MPKK10.3
44803	28842593	Ojha A., Sinha D.K., Padmakumari A.P., Bentur J.S., Nair S.	Bacterial Community Structure in the Asian Rice Gall Midge Reveals a Varied Microbiome Rich in Proteobacteria.	Sci Rep	7(1)	9424	2017		
44804	28835208	Chen R., Cheng Y., Han S., Van Handel B., Dong L., Li X., Xie X.	Whole genome sequencing and comparative transcriptome analysis of a novel seawater adapted, salt-resistant rice cultivar - sea rice 86.	BMC Genomics	18(1)	655	2017		
44805	28801586	Krishnamurthy S.L., Sharma P.C., Sharma D.K., Ravikiran K.T., Singh Y.P., Mishra V.K., Burman D., Maji B., Mandal S., Sarangi S.K., Gautam R.K., Singh P.K., Manohara K.K., Marandi B.C., Padmavathi G., Vanve P.B., Patil K.D., Thirumeni S., Verma O.P., Khan A.H., Tiwari S., Geetha S., Shakila M., Gill R., Yadav V.K., Roy S.K.B., Prakash M., Bonifacio J., Ismail A., Gregorio G.B., Singh R.K.	Identification of mega-environments and rice genotypes for general and specific adaptation to saline and alkaline stresses in India.	Sci Rep	7(1)	7968	2017		
44806	28775653	Swain P., Raman A., Singh S.P., Kumar A.	Breeding drought tolerant rice for shallow rainfed ecosystem of eastern India.	Field Crops Res.	209	168-178	2017		
44807	28805500	Kawasaki T., Yamada K., Yoshimura S., Yamaguchi K.	Chitin receptor-mediated activation of MAP kinases and ROS production in rice and Arabidopsis.	Plant Signal Behav		0	2017		
44808	28779340	Xiao G., Borja F.N., Mauleon R., Padilla J., Telebanco-Yanoria MJ., Yang J., Lu G., Dionisio-Sese M., Zhou B.	Identification of resistant germplasm containing novel resistance genes at or tightly linked to the Pi2/9 locus conferring broad-spectrum resistance against rice blast.	Rice (N Y)	10(1)	37	2017		
44809	28797959	Gupta A., Nair A., Ballal A., Chittela R.K.	C-terminal residues of rice translin are essential for octamer formation and nucleic acid binding.	Plant Physiol. Biochem.	118	600-608	2017		
44810	28811584	Mahakham W., Sarmah A.K., Maensiri S., Theerakulpisut P.	Nanopriming technology for enhancing germination and starch metabolism of aged rice seeds using phytosynthesized silver nanoparticles.	Sci Rep	7(1)	8263	2017		
44811	28850869	Hare V., Chowdhary P., Baghel V.S.	Influence of bacterial strains on Oryza sativa grown under arsenic tainted soil: Accumulation and detoxification response.	Plant Physiol. Biochem.	119	93-102	2017		
44812	28793366	Lee K., Choi G.H., Back K.	Cadmium-induced melatonin synthesis in rice requires light, hydrogen peroxide, and nitric oxide: Key regulatory roles for tryptophan decarboxylase and caffeic acid O-methyltransferase.	J. Pineal Res.			2017		
44813	28787541	Wang Y.P., Tang S.Q., Chen H.Z., Wu Z.F., Zhang H., Duan E.C., Shi Q.H., Wu Z.M.	Identification and molecular mapping of indica high-tillering dwarf mutant htd4, a mild phenotype allelic mutant of D14 in rice (Oryza sativa L.).	Plant Biol (Stuttg)			2017	D3,D17,D27,D10,D53,D14	d3, dwf3, D3/OsMAX2, Os_F0760, SOL1, OsORE9, ORE9, MAX2, OsRFPH2-10, RFPH2-10, OsD3,  OsFBL27, FBL27,d17(t), dwf14, d17, htd1, OsCCD7, CCD7, D17/HTD1, HTD1, OsHTD1, OsD17,d27(d t), dt, dwf23, d27, OsD27,d10(d15,d16), d16, d15, dwf9, d10, OsCCD8b, OsCCD8, CCD8, OsD10,D53(D K3), DK3, Dwf34, SMXL6/7/8, OsD53,d14(d10), dwf13, d10, d14, D88, HTD2, OsHTD2, OsD14, qPPB3, D88/D14, HTD4
44814	28829772	Yang C., Shen W., He Y., Tian Z., Li J.	Correction: OVATE Family Protein 8 Positively Mediates Brassinosteroid Signaling through Interacting with the GSK3-like Kinase in Rice.	PLoS Genet.	13(8)	e1006970	2017		
44815	28794433	Zhen G., Qin P., Liu K.Y., Nie D.Y., Yang Y.Z., Deng X.W., He H.	Genome-wide dissection of heterosis for yield traits in two-line hybrid rice populations.	Sci Rep	7(1)	7635	2017		
44816	28592558	Nguyen G.N., Yamagata Y., Shigematsu Y., Watanabe M., Miyazaki Y., Doi K., Tashiro K., Kuhara S., Kanamori H., Wu J., Matsumoto T., Yasui H., Yoshimura A.	Duplication and Loss of Function of Genes Encoding RNA polymerase III Subunit C4 Causes Hybrid Incompatibility in Rice.	G3 (Bethesda)	7(8)	2565-2575	2017	DGS2,DGS1	RPC4a, RPC4b, RPC4c, RPC4d, RPC4e,OsRPC53, RPC53, OsRPC4, RPC4, OsDGS1
44817	28856618	Thomson M.J., Singh N., Dwiyanti M.S., Wang D.R., Wright M.H., Perez F.A., DeClerck G., Chin J.H., Malitic-Layaoen GA., Juanillas V.M., Dilla-Ermita CJ., Mauleon R., Kretzschmar T., McCouch S.R.	Large-scale deployment of a rice 6?K SNP array for genetics and breeding applications.	Rice (N Y)	10(1)	40	2017		
44818	28821824	Wu Y., Lv W., Hu L., Rao W., Zeng Y., Zhu L., He Y., He G.	Identification and analysis of brown planthopper-responsive microRNAs in resistant and susceptible rice plants.	Sci Rep	7(1)	8712	2017		
44819	28832496	Mu Q., Zhang W., Zhang Y., Yan H., Liu K., Matsui T., Tian X., Yang P.	iTRAQ-Based Quantitative Proteomics Analysis on Rice Anther Responding to High Temperature.	Int J Mol Sci	18(9)		2017		
44820	28830338	Xue W., Yan J., Zhao G., Jiang Y., Cheng J., Cattivelli L., Tondelli A.	A major QTL on chromosome 7HS controls the response of barley seedling to salt stress in the Nure?~?Tremois population.	BMC Genet.	18(1)	79	2017		
44821	28798310	Tian J.C., Romeis J.R., Liu K., Zhang F.C., Zheng X.S., Xu H.X., Chen G.H., He X.C., Lu Z.X.	Assessing the effects of Cry1C rice and Cry2A rice to Pseudogonatopus flavifemur, a parasitoid of rice planthoppers.	Sci Rep	7(1)	7838	2017		
44822	28811335	Liu J., Huang J., Guo H., Lan L., Wang H., Xu Y., Yang X., Li W., Tong H., Xiao Y., Pan Q., Qiao F., Raihan M.S., Liu H., Zhang X., Yang N., Wang X., Deng M., Jin M., Zhao L., Luo X., Zhou Y., Li X., Zhan W., Liu N., Wang H., Chen G., Li Q., Yan J.	The conserved and unique genetic architecture of kernel size and weight in maize and rice.	Plant Physiol.			2017		
44823	28817683	Sales E., Viruel J., Domingo C., Marqu?s L.	Genome wide association analysis of cold tolerance at germination in temperate japonica rice (Oryza sativa L.) varieties.	PLoS ONE	12(8)	e0183416	2017		
44824	28861748	Yang S.Y., Wu Y.S., Chen C.T., Lai M.H., Yen H.M., Yang C.Y.	Physiological and molecular responses of seedlings of an upland rice ('Tung Lu 3') to total submergence compared to those of a submergence-tolerant lowland rice ('FR13A').	Rice (N Y)	10(1)	42	2017		
44825	28785094	Barron A., Turner M., Beeching L., Bellwood P., Piper P., Grono E., Jones R., Oxenham M., Kien N.K.T., Senden T., Denham T.	MicroCT reveals domesticated rice (Oryza sativa) within pottery sherds from early Neolithic sites (4150-3265?cal BP) in Southeast Asia.	Sci Rep	7(1)	7410	2017		
44826	28861807	Sobhy I.S., Miyake A., Shinya T., Galis I.	Oral Secretions Affect HIPVs Induced by Generalist (Mythimna loreyi) and Specialist (Parnara guttata) Herbivores in Rice.	J. Chem. Ecol.			2017		
44827	28801742	Ma Z., Ongena M., H?fte M.	The cyclic lipopeptide orfamide induces systemic resistance in rice to Cochliobolus miyabeanus but not to Magnaporthe oryzae.	Plant Cell Rep.			2017		
44828	28592557	Zhang L., Lou J., Foley M.E., Gu X.Y.	Comparative Mapping of seed dormancy Loci Between Tropical and Temperate Ecotypes of Weedy Rice (Oryza sativa L.).	G3 (Bethesda)	7(8)	2605-2614	2017		
44829	28834651	Dauer J., Hulting A., Carlson D., Mankin L., Harden J., Mallory-Smith C.	Gene flow from single and stacked herbicide-resistant rice (Oryza sativa): modeling occurrence of multiple herbicide-resistant weedy rice.	Pest Manag. Sci.			2017		
44830	28779704	Moulick D., Santra S.C., Ghosh D.	Seed priming with Se alleviate As induced phytotoxicity during germination and seedling growth by restricting As translocation in rice (Oryza sativa L c.v. IET-4094).	Ecotoxicol. Environ. Saf.	145	449-456	2017		
44831	28847366	Cho J., Paszkowski J.	Regulation of rice root development by a retrotransposon acting as a microRNA sponge.	Elife	6		2017		
44832	28838812	Braga L.F., Oliveira F.A., Couto EAPD., Santos KFDN., Ferreira E.P.B., Martin-Didonet CCG.	Polyphasic characterization of bacteria obtained from upland rice cultivated in Cerrado soil.	Braz. J. Microbiol.			2017		
44833	28821707	Lee S., Jeong H., Lee S., Lee J., Kim S.J., Park J.W., Woo H.R., Lim P.O., An G., Nam H.G., Hwang D.	Molecular bases for differential aging programs between flag and second leaves during grain-filling in rice.	Sci Rep	7(1)	8792	2017		
44834	28859136	Cao A., Jin J., Li S., Wang J.	Integrated analysis of mRNA and miRNA expression profiling in rice backcrossed progenies (BC2F12) with different plant height.	PLoS ONE	12(8)	e0184106	2017		
44835	28555319	Ji L., Zhou P., Zhu Y., Liu F., Li R., Qiu Y.	Proteomic Analysis of Rice Seedlings Under Cold Stress.	Protein J.	36(4)	299-307	2017		
44836	28795219	Jena K.K., Hechanova S.L., Verdeprado H., Prahalada G.D., Kim S.R.	Development of 25 near-isogenic lines (NILs) with ten BPH resistance genes in rice (Oryza sativa L.): production, resistance spectrum, and molecular analysis.	Theor. Appl. Genet.			2017		
44837	28786735	Sagor G.H.M., Kusano T., Berberich T.	Identification of the actual coding region for polyamine oxidase 6 from rice (OsPAO6) and its partial characterization.	Plant Signal Behav		0	2017		
44838	15720083	Yang B., Sugio A., Frank F White	Avoidance of host recognition by alterations in the repetitive and C-terminal regions of AvrXa7, a type III effector of Xanthomonas oryzae pv. oryzae.	Mol. Plant Microbe Interact.	18(2)	142-9	2005	XA7	Xa7
44839	15256004	Fatima Cvrckov?, Marian Novotn?, Denisa P?ckov?, Viktor Z?rsk?	Formin homology 2 domains occur in multiple contexts in angiosperms.	BMC Genomics	5(1)	44	2004	_,BUI1,FH6,_,DW2,_,_,_,_,_,_,_,_,_,_,FH3	OsFH13, FH13,BUI1, FH5, FH5/BUI1, RMD, OsRMD, OsFH5, FH5/RMD ,OsFH6,OsFH14, FH14,dw2(fh2), dw2, fh2, FH2, OsFH2,OsFH4, FH4,OsFH1, FH1,OsFH16, FH16,OsFH15, FH15,OsSTA198, STA198, OsFH11, FH11,OsFH10, FH10,OsFH9, FH9,OsFH7, FH7,OsFH8, FH8,OsFH12, FH12, OsPP62, OsSTA117, PP62, STA117,OsFH3
44840	0	Yanga W., Lub Z., Xionga Y., Yaoa J.	Genome-wide identification and co-expression network analysis of the OsNF-Y gene family in rice	The Crop Journal	5(1)	21-31	2017	HAP3D,HAP5B,HAP2G,HAP2K,HAP2E,LEC1,HAP3K,HAP5C,HAP2A,HAP2D,HAP5G,HAP5F,HAP2J,HAP5L,HD5,HAP2B,HAP5A,HAP5H,HAP3I,HAP3C,HAP5K,HAP2C,HAP3J,HAP5I,HAP3B,HAP3A,HAP5J,HAP3G,HAP5E,HAP5D,HAP2I,HAP2F,HAP3F,HAP2H	OsHAP3D, OsEnS-83, OsNF-YB9, NF-YB9, NFYB9, OsLEC1A, LEC1A,OsHAP5B, NF-YC, CBF-C, OsNF-YC4, Os-NF-YC4, NF-YC4, NFYC4, OsNF-YC4-3, NF-YC4-3,OsHAP2G, NF-YA, CBF-B, NF-YA6, OsNF-YA6, NFYA6,OsHAP2K, NF-YA11, OsNF-YA11, NFYA11,OsHAP2E, NF-YA, CBF-B, NF-YA2, OsNF-YA2, NFYA2,OsHAP3E, HAP3E, OsLEC1/OsHAP3E, OsLEC1, LEC1, OsNF-YB7, NF-YB7, NFYB7, L1L ,OsHAP3K/OsNF-YB1, OsHAP3K, OsNF-YB1, NF-YB1, nf-yb1, OsLEC1, OsNF-YB-1, NFYB1, OsEnS-41,OsHAP5C, NF-YC, CBF-C, OsNF-YC2, Os-NF-YC2, NF-YC2, NFYC2, OsNF-YC4-1, NF-YC4-1,OsHAP2A, NF-YA, CBF-B, NF-YA7, OsNF-YA7, NFYA7,OsHAP2D, NF-YA, CBF-B, NF-YA4, OsNF-YA4, NFYA4,OsHAP5G, NF-YC, CBF-C, OsNF-YC3, Os-NF-YC3, NF-YC3, NFYC3,OsHAP5F, NF-YC, CBF-C, OsNF-YC5, Os-NF-YC5, NF-YC5, NFYC5,OsHAP2J, NF-YA, CBF-B, NF-YA5, OsNF-YA5, NFYA5,OsEnS-133, OsHAP5L, OsNF-YC12, NF-YC12, OsNF-YC11, NF-YC11, NFYC11,Hd5(t)*, Hd5, qHD5, HAP3H, OsHAP3H, NF-YB, CBF-A, DTH8 , qHD5(t)*, Ghd8, Ghd8/DTH8, Lhd1, NF-YB11, OsNF-YB11, NFYB11, LH8, DTH8/Ghd8, RH8, DTH8/Ghd8/LHD1, CAR8, DTH8/Ghd8/ OsHAP3H, EF8, OsEF8,OsHAP2B, NF-YA, CBF-B, NF-YA9, OsNF-YA9, NFYA9,OsHAP5A, NF-YC, CBF-C, OsNF-YC1, Os-NF-YC1, NF-YC1, NFYC1 , OsNF-YC4-2, NF-YC4-2,OsHAP5H, OsNF-YC9, NF-YC9, NFYC9,OsHAP3I, NF-YB, CBF-A, NF-YB8, OsNF-YB8, NFYB8,OsHAP3C, OsNF-YB-4, NFYB4, OsNF-YB3, NF-YB3, NFYB3, OsHAP3B, HAP3B,OsHAP5K, OsNF-YC11, NF-YC11, OsNF-YC12, NF-YC12, NFYC12,OsHAP2C, NF-YA, CBF-B, NF-YA1, OsNF-YA1, NFYA1,OsHAP3J, NF-YB, CBF-A, OsNF-YB5, NF-YB5, NF-YB5,OsEnS-5, OsHAP5I, OsNF-YC10, NF-YC10, NFYC10,OsHAP3B, OsNF-YB-3, NFYB3, OsNF-YB4, NF-YB4, NFYB4, OsHAP3C, HAP3C,OsHAP3A,OsNF-YB-2, NFYB2, NF-YB2,OsHAP5J, OsNF-YC8, NF-YC8, NFYC8,OsHAP3G, NF-YB, CBF-A, OsNF-YB6, NF-YB6, NFYB6,OsHAP5E, NF-YC, CBF-C, OsNF-YC7, Os-NF-YC7, NF-YC7, NFYC7,OsHAP5D, NF-YC, CBF-C, OsNF-YC6, Os-NF-YC6, NF-YC6, NFYC6,OsHAP2I, NF-YA, CBF-B, NF-YA8, OsNF-YA8, OsEnS-136, NFYA8,OsHAP2F, NF-YA, CBF-B, NF-YA10, OsNF-YA10, NFYA10,OsHAP3F, NF-YB, CBF-A, NF-YB10, OsNF-YB10, NFYB10,OsHAP2H, NF-YA, CBF-B, NF-YA3, OsNF-YA3, NFYA3
44841	12773632	Ki-Hong Jung, Hur J., Choong-Hwan Ryu, Choi Y., Yong-Yoon Chung, Miyao A., Hirochika H., An G.	Characterization of a rice chlorophyll-deficient mutant using the T-DNA gene-trap system.	Plant Cell Physiol.	44(5)	463-72	2003	CHLH	OsChlH, ChlH, OsCHLH
44842	0	Fujita N.	Starch Biosynthesis in Rice Endosperm	AGri-Bioscience Monographs	4(1)	1-18	2014	WX1	wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx
44843	0	Hyun Yeong Kim, Eun-Hye Choi, Myung Ki Min, Hwang H., Seok-Jun Moon, Yoon I., Myung-Ok Byun	Differential gene expression of two outward-rectifying shaker-like potassium channels OsSKOR and OsGORK in rice	Journal of Plant Biology	58(4)	230-235	2015	GORK ,SKOR 	OsGORK, OsK5.2, K5.2, KOR1, OsKOR1, OsSKOR, SKOR,OsSKOR, OsK5.1, K5.1
44844	0	Chang-Xin Fang, Qing-Shui Wang, Yu Y., Qing-Mao Li, Hai-Li Zhang, Xing-Chun Wu, Chen T., Wen-Xiong Lin	Suppression and overexpression of Lsi1 induce differential gene expression in rice under ultraviolet radiation	Plant Growth Regul.	65(1)	1-10	2011	LSI1	lsi1, NIP2-1, OsNIP2;1, NIP2;1, OsLsi1, lsi(t), OsNIP2.1/OsLsi1/OsSIIT1, OsNIP2.1, NIP2.1
44845	24055139	Sophie L?ran, Varala K., Jean-Christophe Boyer, Chiurazzi M., Crawford N., Fran?oise Daniel-Vedele, David L., Dickstein R., Fernandez E., Forde B., Gassmann W., Geiger D., Gojon A., Ji-Ming Gong, Barbara A Halkier, Jeanne M Harris, Hedrich R., Anis M Limami, Rentsch D., Seo M., Yi-Fang Tsay, Zhang M., Coruzzi G., Beno?t Lacombe	A unified nomenclature of NITRATE TRANSPORTER 1/PEPTIDE TRANSPORTER family members in plants.	Trends Plant Sci.	19(1)	5-9	2014	PTR6,PTR4,PTR9,PTR1,PTR5,PTR7,PTR2,NRT1,SP1,PTR8,RBLS5	OsPTR6, OsNRT1;2, NRT1;2, OsNPF7.3, NPF7.3 ,OsPTR4, OsNPF7.1, NPF7.1 ,OsPTR9, OsNPF8.20, NPF8.20  ,OsPTR1, OsNPF8.2, NPF8.2 ,OsPTR5, OsNPF7.4, NPF7.4 ,OsPTR7, OsNPF8.1, NPF8.1, OsNPF8.10, NPF8.10,OsPTR2, OsNPF2.2, NPF2.2,OsNRT1, OsNRT1;1, OsNRT1.1, OsNRT1.1a, OsNRT1.1b, NRT1.1, NRT1.1a, NRT1.1b, OsNPF8.9, NPF8.9 , OsNRT1.1B,sp, SP, OsNPF4.1, NPF4.1, OsSP1,OsPTR8, OsNPF8.5, NPF8.5 ,PTR3, OsPTR3, PTR3-A, OsPTR3-A, OsNPF5.5, NPF5.5, OsRBLS5
44846	22046259	Aya K., Suzuki G., Suwabe K., Hobo T., Takahashi H., Shiono K., Yano K., Tsutsumi N., Nakazono M., Nagamura Y., Matsuoka M., Watanabe M.	Comprehensive network analysis of anther-expressed genes in rice by the combination of 33 laser microdissection and 143 spatiotemporal microarrays.	PLoS ONE	6(10)	e26162	2011	MS2	OsMS2, OsDPW, DPW, DPW1, OsDPW1, OsFAR2, FAR2
44847	0	Ci-Feng Cai, Zhu J., Lou Y., Zong-Li Guo, Shuang-Xi Xiong, Wang K., Zhong-Nan Yang	The functional analysis of OsTDF1 reveals a conserved genetic pathway for tapetal development between rice and Arabidopsis	Science Bulletin	60(12)	1073-1082	2015	TDF1	OsTDF1, MYB35, OsMYB35
44848	22843665	Amber L Hauvermale, Ariizumi T., Camille M Steber	Gibberellin signaling: a theme and variations on DELLA repression.	Plant Physiol.	160(1)	83-92	2012	GID2,SLR1,GID1	gid2, GF14e, OsGF14e, OsGID2, 14-3-3e,slr1-1, slr1, slr, GAI, OsGAI, OsSLR1, Os SLR1, OsRGA1, OsGRAS-18, OsGRAS-18, GRAS-18, GRAS18, SLR-1,gid1, OsGID1, Thl, Os GID1
44849	28974472	Zhang X., Yao C., Fu S., Xuan H., Wen S., Liu C., Li F., Liu A., Bi S., Zhang S., Li S.	Stress2TF: a manually curated database of TF regulation in plant response to stress.	Gene	638	36-40	2018		
44850	28939596	Zhang F., Tang D., Shen Y., Xue Z., Shi W., Ren L., Du G., Li Y., Cheng Z.	The F-box protein zygo1 Mediates Bouquet Formation to Promote Homologous Pairing, Synapsis, and Recombination in Rice Meiosis.	Plant Cell	29(10)	2597-2609	2017	PAIR2,_,ZIP4,ZYGO1,PAIR3,OSK1,ZEP1,HEI10	Pair2, OsPAIR2, OsASY1,OsSAD1, SAD1, OsSUN2, SUN2, OsSUN1, SUN1,OsZIP4, SPO22, OsSPO22,Os_F0777, OsZYGO1,,SKP1, OsSKP1,OsZEP1,HEI10A, HEI10B, OsHEI10,  OsRING434, RING434
44851	28947492	Schneider R., Tang L., Lampugnani E.R., Barkwill S., Lathe R., Zhang Y., McFarlane H.E., Pesquet E., Niittyla T., Mansfield S.D., Zhou Y., Persson S.	Two Complementary Mechanisms Underpin Cell Wall Patterning during Xylem Vessel Development.	Plant Cell	29(10)	2433-2449	2017	_,CESA7,CSIL2,BC7,CSIL1,BC6	CSIL3, OsCSIL3,OsCesA7, OsCESA7, OS_CESA07, OsCesA 7, CesA7,OsCSIL2, OsC2DP80, C2DP80,OsCesA4, OsCESA4, CESA4, OS_CESA04, BC11, bc7t, Bc7(t), bc-7, OsCesA 4, CesA4, FC17/CESA4, FC17, OsFC17,OsCSIL1, OsC2DP48, C2DP48,Bc6*, Bc6, OsCesA9, CESA9, OsCESA9, OS_CESA09, OsCesA 9, CesA9, BC88, SDBC1, OsSDBC1
44852	28947303	Huang R., Zhao J., Liu J., Wang Y., Han S., Zhao H.	Genome-wide analysis and expression profiles of NTMC2 family genes in Oryza sativa.	Gene	637	130-137	2017	NTMC2T1.5,NTMC2T1.3,NTMC2T6.1,NTMC2T5,NTMC2T1.1,NTMC2T6.2,NTMC2T2.1,NTMC2T4.2,NTMC2T4.1,NTMC2T2.2,NTMC2T1.2,NTMC2T3,NTMC2T1.4	OsNTMC2T1.5, OsC2DP57, C2DP57,OsNTMC2T1.3, OsC2DP7, C2DP7,OsNTMC2T6.1, OsC2DP3, C2DP3,OsNTMC2T5, OsC2DP26, C2DP26,OsNTMC2T1.1, OsC2DP17, C2DP17,OsNTMC2T6.2, OsC2DP15, C2DP15,OsNTMC2T2.1, OsC2DP37, C2DP37,OsNTMC2T4.2, OsC2DP29, C2DP29,OsNTMC2T4.1, OsSYT-5, SYT-5, SYT5, OsSYT5, OsC2DP62, C2DP62,OsNTMC2T2.2, OsC2DP70, C2DP70,OsNTMC2T1.2, OsC2DP76, C2DP76,OsNTMC2T3, OsC2DP1, C2DP1,OsNTMC2T1.4, OsC2DP6, C2DP6
44853	29087306	Yu J., Han J., Kim Y.J., Song M., Yang Z., He Y., Fu R., Luo Z., Hu J., Liang W., Zhang D.	Two rice receptor-like kinases maintain male fertility under changing temperatures.	Proc. Natl. Acad. Sci. U.S.A.	114(46)	12327-12332	2017	TMS10,SERL8	OsSERK4, OsSERL9, OsSERK2, OsBAK1-5, OsTMS10, SERK4, SERL9, SERK2, BAK1-5, OsBAK1, BAK1,OsSERL8, OsBAK1-6, BAK1-6, TMS10L
44854	29042404	Brambilla V., Martignago D., Goretti D., Cerise M., Somssich M., de Rosa M., Galbiati F., Shrestha R., Lazzaro F., Simon R., Fornara F.	Antagonistic Transcription Factor Complexes Modulate the Floral Transition in Rice.	Plant Cell	29(11)	2801-2816	2017	RFT1,EF1,BZIP9,BZIP77,HD3A,BZIP42,BZIP62,BZIP24,RAP1A,GF14C,RAP1B	FT-L 3, OsFTL3, FTL3, FT-L3, RFT, OsRFT1,Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,OsbZIP09, OsbZIP9, OsABF6, ABF6, HBF2,OsbZIP77, OsFD1, FD1,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,OsbZIP42, OsABF7, ABF7, HBF1, DLN149, OsDLN149,OsbZIP62, OsABF8, OsEEL, EEL,OsbZIP24, OsFD3, FD3, bZIP24/OsFD3,OsMADS15, FDRMADS3, RMADS215, MADS15, DEP,GF14c, OsGF14c, 14-3-3c,MADS14, OsMADS14, FDRMADS6, RMADS211, AGL10
44855	28987346	Jiang S., Jiang L., Yang J., Peng J., Lu Y., Zheng H., Lin L., Chen J., Yan F.	Over-expression of Oryza sativa Xrn4 confers plant resistance to virus infection.	Gene	639	44-51	2018	_,EIN5,XRN3	OsXrn4-L, Xrn4-L,OsXrn4, Xrn4, OsEIN5,OsXrn3, Xrn3
44856	29358563	Giri M.K., Gautam J.K., Rajendra Prasad VB., Chattopadhyay S., Nandi A.K.	Rice MYC2 (OsMYC2) modulates light-dependent seedling phenotype, disease defence but not ABA signalling.	J. Biosci.	42(3)	501-508	2017	BHLH9	OsbHLH009, bHLH009, OsMYC2, MYC2
44857	28955349	Lu H., Dai Z., Li L., Wang J., Miao X., Shi Z.	OsRAMOSA2 Shapes Panicle Architecture through Regulating pedicel length.	Front Plant Sci	8	1538	2017	RCN2,LAX1,RA2	Rcn2, OsRCN2,lax, lax(lx), lx, OsbHLH123, bHLH123, OsLAX1, BOS1, OsBOS1,ra2, Osra2, OsCrll4, CRL1L4, CRLL4, OsRA2
44858	28873038	Kurusu T., Koyano T., Kitahata N., Kojima M., Hanamata S., Sakakibara H., Kuchitsu K.	Autophagy-mediated regulation of phytohormone metabolism during rice anther development.	Plant Signal Behav	12(9)	e1365211	2017	ATG7	OsATG7, Atg7
44859	28979272	Zhu Q., Zhang X.L., Nadir S., DongChen WH., Guo X.Q., Zhang H.X., Li C.Y., Chen L.J., Lee D.S.	A LysM domain-containing gene OsEMSA1 Involved in Embryo sac Development in Rice (Oryza sativa L.).	Front Plant Sci	8	1596	2017	EMSA1,GA2OX8,HOX24,NAC5,_	OsEMSA1 ,OsGA2ox8,Oshox24, OsHox24, OsSLI1, OsHDZ6, OsHDZIP6, HDZ6, HDZIP6,OsNAC5, NAC71, ONAC071, ONAC009, ONAC9, ONAC020, ONAC20, OnNAC5*, OnNAC5, OsNAC5/ONAC009,
44860	28904339	Liu Y.J., Liu X., Chen H., Zheng P., Wang W., Wang L., Zhang J., Tu J.	A Plastid-Localized Pentatricopeptide Repeat Protein is Required for Both pollen Development and Plant Growth in Rice.	Sci Rep	7(1)	11484	2017	PPR676,_,10GBTF3	OsPPR676, OsATP4, ATP4,atpB, AtpB, atpcf1, ATPbeta,Osj10gBTF3, 10gBTF3, Os10gBTF3, BTF3a, OsBTF3a
44861	28894020	Tian X., Li X., Zhou W., Ren Y., Wang Z., Liu Z., Tang J., Tong H., Fang J., Bu Q.	Transcription Factor OsWRKY53 Positively Regulates Brassinosteroid Signaling and Plant Architecture.	Plant Physiol.	175(3)	1337-1349	2017	D61,SMG1,DSG1,WRKY53	d61*, dwf42, d61, OsBRI1, OSBRI1, BRI1, Os BRI1, Osbri1, OsBRKq1, BRKq1,OsMKK4, MKK4, OsMKK4/SMG1, OsMAPKK4, MAPKK4, OsMEK4, MEK4, OsSMG1, SMG1/OsMEK6, OsMEK6, MEK6, OsSTS, STS,OsMAPK6, MAPK6, OsMPK6, OsSIPK, SIPK, OsMAPK1, MAPK1, MPK1, OsMPK1, MPK6, OsDSG1,OsWRKY53, WRKY-53
44862	28906478	Wang J., Islam F., Li L., Long M., Yang C., Jin X., Ali B., Mao B., Zhou W.	Complementary RNA-Sequencing Based Transcriptomics and iTRAQ Proteomics Reveal the Mechanism of the Alleviation of Quinclorac Stress by Salicylic Acid in Oryza sativa ssp. japonica.	Int J Mol Sci	18(9)		2017	WRKY45,PAL1,PK1,MDH12.1,PAL,ERF92,NAC122,_,BGLU7,IRO2,4CL4,ALDH2A,PHR3,GR3,DREB2A,GR2,PAL1,NAC95,_,WRKY76,EREBP1,ALDH7	OsWRKY45, OsWRKY45-1, OsWRKY45-2, WRKY45-1, WRKY45-2,OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6,OsPK1,OsMDH12.1, OsLdh12, Ldh12,OsPAL, OsPAL08, PAL2, GP-28, GP28, PAL08, OsPAL2, OsPAL8, PAL8,OsERF#092, OsERF092, OsERF92, ERF922, OsERF922, AP2/EREBP#078, AP2/EREBP78,OsNAC10, NAC10, ONAC122, NAC122, OsSNAC10, SNAC10,OsG6PDH5, G6PDH5,Os3bglu7, Os3BGlu7, 3BGLU7, BGlu7, BGlu1, bglu1,OsIRO2, OsbHLH056, bHLH056, bHLH56, OsbHLH56,Os4CL4,OsALDH2a, ALDH2a, Aldh2a, OsSTA73, OsALDH2B5, ALDH2B5  ,OsPHR3, Os-PHR3, OsPHL1, PHL1 ,OsGR3,OsDREB2A, OsDREB2a, ERF40, OsERF#040, OsERF040, OsERF40, AP2/EREBP#167, AP2/EREBP167,OsGR2, RGRC2, OsGR, OsGR3, OsRGRC2,OsPAL, Pal1*, Pal1, PAL, Pal_1, PalI, PAL2, OsPAL01, PAL01, OSPAL, CP-1, GP-1, OsPAL1, PAL3, OsPAL3,ONAC095, ONAC95,IGPS,OsWRKY76, OsWRKY76.1, OsWRKY76.2, OsWRKY76.3,OsEREBP1, OsERF#070, OsERF070, OsERF70, ERF70, AP2/EREBP#084, AP2/EREBP84,OsALDH7, osaldh7, LDH, ALDH7B7, OsALDH7B6, ALDH7B6, OsAnt1, Ant1
44863	29021797	Zhang P., Zhang Y., Sun L., Sinumporn S., Yang Z., Sun B., Xuan D., Li Z., Yu P., Wu W., Wang K., Cao L., Cheng S.	The Rice AAA-ATPase OsFIGNL1 Is Essential for Male Meiosis.	Front Plant Sci	8	1639	2017	DMC1A,DMC1B,COLD11,RAD51A2,FIGNL1	OsDMC1A, OsDmc1A, Dmc1A, DMC1, OsDMC1, RiLIM15A, OsRad51,OsDMC1B, OsDmc1B, Dmc1B, RiLIM15B ,OsRAD51A1, RAD51A1, OsCOLD11,OsRad51A2, OsRAD51,OsFIGNL1
44864	28943882	Zhang H., Liu X.L., Zhang R.X., Yuan H.Y., Wang M.M., Yang H.Y., Ma H.Y., Liu D., Jiang C.J., Liang Z.W.	Root Damage under Alkaline Stress Is Associated with Reactive Oxygen Species Accumulation in Rice (Oryza sativa L.).	Front Plant Sci	8	1580	2017	CP1,_,KOD1,NAC4,HSR203J	OsCP1, Os CP1,OsBI-1, OsBI1, BI1,OsKOD1,OsNAC4, NAC68, ONAC068, OnNAC4*, OnNAC4, OsNAC4/ONAC068,Hsr203j, OsHsr203j
44865	28936981	Li J., Liu Y.H., Zhang Y., Chen C., Yu X., Yu S.W.	Drought stress modulates diurnal oscillations of circadian clock and drought-responsive genes in Oryza sativa L.	Yi Chuan	39(9)	837-846	2017		
44866	28900229	Kuang J., Liu J., Mei J., Wang C., Hu H., Zhang Y., Sun M., Ning X., Xiao L., Yang L.	A Class II small heat shock protein OsHsp18.0 plays positive roles in both biotic and abiotic defense responses in rice.	Sci Rep	7(1)	11333	2017	PAL1,PR1A,HSP18.0-CII,NH1,PAD4,PR1B	OsPAL, Pal1*, Pal1, PAL, Pal_1, PalI, PAL2, OsPAL01, PAL01, OSPAL, CP-1, GP-1, OsPAL1, PAL3, OsPAL3,OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1, OsPR1b, PR1alpha, OsPR1alpha,OsHSP18.0-CII, Oshsp18.0-CII, OsHSP18.0, OsHSP18.2,OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2, DLN5, OsDLN5,  OsBTBA1, BTBA1,OsPAD4,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1, OsPR1a, PR1a
44867	28879616	Li J., Qin R., Xu R., Li H., Yang Y., Li L., Wei P., Yang J.	Isolation and identification of five cold-inducible promoters from Oryza sativa.	Planta	247(1)	99-111	2018	_,MDR7,ABA8OX1,ERF104,CYP19-4	LHY, LHY-like_chr.4, OsMYBR1, MYBR1, OsMYB1R35, MYB1R35,MDR4, OsABCB5, ABCB5, OsPGP5, OsMDR7, OsISC28, MRP4, OsMRP4, OsABCB11, ABCB11, MR7, OsMR7,OsABA8OX1, CYP707A5, OsCYP707A5, ABA8ox1, OsABA8ox1, OsABA8'OH1, ABA8'OH1 ,DERF3, OsDERF3, OsERF#104, OsERF104, AP2/EREBP#152, AP2/EREBP152, RAP2, OsRAP2,OsCYP19-4, OsCYP-16, OsCYP19-3, OsCYP19-4.1, OsCYP19-4.2, OsCYP19-4.3, OsCYP19-4.4, OsCYP19-4.5, OsCYP19-4.6, OsCYP19-4.7, OsCYP19-4.8
44868	28869785	Li N., Wei S., Chen J., Yang F., Kong L., Chen C., Ding X., Chu Z.	OsASR2 regulates the expression of a defence-related gene, Os2H16, by targeting the GT-1 cis-element.	Plant Biotechnol. J.			2017	ASR5,_	OsASR5, Asr5, Asr1, OsASR1, OsASR2, ASR2,Os2H16, 2H16
44869	28955376	Zhou J., Deng K., Cheng Y., Zhong Z., Tian L., Tang X., Tang A., Zheng X., Zhang T., Qi Y., Zhang Y.	CRISPR-Cas9 Based Genome Editing Reveals New Insights into MicroRNA Function and Regulation in Rice.	Front Plant Sci	8	1598	2017	MIR815A,MIR820B,MIR815C,MIR815B,MIR820C,MIR528,MIR408,UCL23,AAO2,_,MIR820A,UCL7,D3	miR815a, osa-miR815a, osa-MIR815a, OsmiR815a,miR820b, osa-miR820b, osa-MIR820b, OsmiR820b,miR815c, osa-miR815c, osa-MIR815c, OsmiR815c,miR815b, osa-miR815b, osa-MIR815b, OsmiR815b,miR820c, osa-miR820c, osa-MIR820c, OsmiR820c,miR528, Osa-miR528, OsmiR528, OsMIR528, osa-MIR528, miR528*, osa-miR528, osa-miR528-5p, MIR528-T1, MIR528-T2,miR408, osa-MIR408osa-miR408 osa-miR408-3p osa-miR408-5p, OsMIR408 ,OsUCL23,OsAAO2, L-APX, RIP5, OsRIP5,,miR820a, osa-miR820a, osa-MIR820a, OsmiR820a,OsUCL7,d3, dwf3, D3/OsMAX2, Os_F0760, SOL1, OsORE9, ORE9, MAX2, OsRFPH2-10, RFPH2-10, OsD3,  OsFBL27, FBL27
44870	28979285	Choi N.Y., Lee E., Lee S.G., Choi C.H., Park S.R., Ahn I., Bae S.C., Hwang C.H., Hwang D.J.	Genome-Wide Expression Profiling of OsWRKY Superfamily Genes during Infection with Xanthomonas oryzae pv. oryzae Using Real-Time PCR.	Front Plant Sci	8	1628	2017	PR10A,WRKY73,WRKY7,WRKY45,WRKY10,WRKY96,WRKY51,WRKY31,WRKY80,WRKY49,WRKY41,WRKY5,WRKY32,WRKY18,WRKY48,WRKY30,WRKY78,WRKY39,WRKY1,WRKY58,WRKY46,WRKY34,WRKY62,WRKY3,WRKY79,WRKY12,WRKY115,WRKY50,WRKY9,WRKY37,WRKY121,WRKY70,WRKY102,WRKY107,WRKY27,WRKY123,WRKY29,WRKY4,WRKY54,WRKY76,WRKY66,WRKY15,WRKY95,WRKY83,WRKY40,WRKY84,WRKY23,WRKY86,WRKY105,WRKY75,WRKY22,WRKY94,WRKY8,WRKY67,WRKY20,WRKY82,WRKY109,WRKY11,WRKY64,WRKY19,WRKY117,WRKY21,WRKY77,WRKY28,WRKY68,WRKY2,WRKY74,WRKY106,WRKY118,WRKY71,WRKY43,WRKY114,WRKY17,WRKY55,WRKY16,WRKY47,WRKY65,WRKY42,WRKY60,WRKY87,WRKY104,WRKY88,WRKY108,WRKY69,WRKY14,WRKY56,WRKY13,WRKY52,WRKY119,WRKY113,WRKY6,WRKY81,WRKY25,SGSD3,XA1,WRKY26,WRKY112,WRKY90	PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsWRKY73,OsWRKY7,OsWRKY45, OsWRKY45-1, OsWRKY45-2, WRKY45-1, WRKY45-2,OsWRKY10,OsWRKY96,OsWRKY51,OsWRKY31,OsWRKY80,OsWRKY49,OsWRKY41, WRKY63, OsWRKY63,OsWRKY5 ,OsWRKY32,OsWRKY18,OsWRKY48,OsWRKY30,OsWRKY78,OsWRKY39,OsWRKY1, OsWRKY1v2,OsWRKY58,OsWRKY46, WRKY91, OsWRKY91,OsWRKY34,OsWRKY62, OsWRKY62.1, OsWRKY62.2, XB10, OsWRKY62-1, OsWRKY62-2,OsWRKY3 ,OsWRKY79, WRKY-79,OsWRKY12,OsWRKY115,OsWRKY50,OsWRKY9,OsWRKY37,OsWRKY121,OsWRKY70,OsWRKY102,OsWRKY107,OsWRKY27,OsWRKY123, DLN183, OsDLN183,OsWRKY29,OsWRKY4, WRKY122, OsWRKY122,OsWRKY54,OsWRKY76, OsWRKY76.1, OsWRKY76.2, OsWRKY76.3,OsWRKY66,OsWRKY15,OsWRKY95,OsWRKY83,OsWRKY40,OsWRKY84,OsWRKY23,OsWRKY86, OsaLeg5, Leg5,OsWRKY105,OsWRKY75,OsWRKY22,OsWRKY94,OsWRKY8,OsWRKY67,OsWRKY20,OsWRKY82,OsWRKY109,OsWRKY11, Dlf1, OsWRKY11.1, OsWRKY11.2,OsWRKY64,OsWRKY19,OsWRKY117, DLN205, OsDLN205,OsWRKY21,OsWRKY77, WRKY-77,OsWRKY28, DLN170, OsDLN170,OsWRKY68,OsWRKY2,OsWRKY74,OsWRKY106,OsWRKY118,OsWRKY71, WRKY-71,OsWRKY43,OsWRKY114,OsWRKY17,OsWRKY55,OsWRKY16,OsWRKY47,OsWRKY65,OsWRKY42, WRKY-42,OsWRKY60,OsWRKY87, OsSUSIBA2-like,OsWRKY104, CRPG32, OsCRPG32,OsWRKY88,OsWRKY108,OsWRKY69,OsWRKY14,OsWRKY56,OsWRKY13,OsWRKY52,OsWRKY119,OsWRKY113,OsWRKY6, WRKY-6, DLN103, OsDLN103,OsWRKY81, OsWRKY33,OsWRKY25, OsWRKY44, WRKY44,OsWRKY36, WRKY36, OsSGSD3,Xa1(Xe), Xe, Xa1, Xa-1,OsWRKY26, OsWRKY59, DLN19, OsDLN19,OsWRKY112,OsWRKY90
44871	28973723	Viana V.E., Marini N., Finatto T., Ezquer I., Busanello C., Dos Santos RS., Pegoraro C., Colombo L., Costa de Oliveira A.	Iron excess in rice: from phenotypic changes to functional genomics of WRKY transcription factors.	Genet. Mol. Res.	16(3)		2017	WRKY46,WRKY64,_,WRKY113	OsWRKY46, WRKY91, OsWRKY91,OsWRKY64,,OsWRKY113
44872	28950028	Basak P., Maitra-Majee S., Das J.K., Mukherjee A., Ghosh Dastidar S., Pal Choudhury P., Lahiri Majumder A.	An evolutionary analysis identifies a conserved pentapeptide stretch containing the two essential lysine residues for rice L-myo-inositol 1-phosphate synthase catalytic activity.	PLoS ONE	12(9)	e0185351	2017	INO1	OsINO1, MIPS, IPS, RINO1, OsINO1-1, OsRINO1, OsMIPS1, MIPS1
44873	28956163	Yashvardhini N., Bhattacharya S., Chaudhuri S., Sengupta D.N.	Molecular characterization of the 14-3-3 gene family in rice and its expression studies under abiotic stress.	Planta	247(1)	229-253	2018	GID2,GF14D,GF14C,GF14F,GF14A,GF14G,GF14B,GF14H	gid2, GF14e, OsGF14e, OsGID2, 14-3-3e,GF14d, OsGF14d, Os14-3-3, 14-3-3d,GF14c, OsGF14c, 14-3-3c,GF14f, SR14-3-3, OsGF14f, S94, ric1, 14-3-3f,GF14a, OsGF14a, WIN2, 14-3-3a,GF14g, OsGF14g, 14-3-3g,GF14b, OsGF14b, 14-3-3b,GF14h, OsGF14h, 14-3-3h
44874	28922748	Rai H., Yokoyama S., Satoh-Nagasawa N., Furukawa J., Nomi T., Ito Y., Fujimura S., Takahashi H., Suzuki R., Yousra E., Goto A., Fuji S., Nakamura S.I., Shinano T., Nagasawa N., Wabiko H., Hattori H.	Cesium Uptake by Rice Roots Largely Depends Upon a Single Gene, HAK1, Which Encodes a Potassium Transporter.	Plant Cell Physiol.	58(9)	1486-1493	2017	LCS	OsHAK1, HAK1
44875	28871478	Senoura T., Sakashita E., Kobayashi T., Takahashi M., Aung M.S., Masuda H., Nakanishi H., Nishizawa N.K.	The iron-chelate transporter OsYSL9 plays a role in iron distribution in developing rice grains.	Plant Mol. Biol.	95(4-5)	375-387	2017	YSL15,YSL9	OsYSL15, OsYs7,OsYSL9, OsYs13 
44876	28904074	Zhang J.P., Yu Y., Feng Y.Z., Zhou Y.F., Zhang F., Yang Y.W., Lei M.Q., Zhang Y.C., Chen Y.Q.	miR408 Regulates grain yield and Photosynthesis via a Phytocyanin Protein.	Plant Physiol.	175(3)	1175-1185	2017	PC,MIR408,UCL8	OsPC, PetE, OsPETE, OsCPL1, CPL1,miR408, osa-MIR408osa-miR408 osa-miR408-3p osa-miR408-5p, OsMIR408 ,OsUCL8
44877	28932262	Fan C., Feng S., Huang J., Wang Y., Wu L., Li X., Wang L., Tu Y., Xia T., Li J., Cai X., Peng L.	AtCesA8-driven OsSUS3 expression leads to largely enhanced biomass saccharification and lodging resistance by distinctively altering lignocellulose features in rice.	Biotechnol Biofuels	10	221	2017	IRX14,IRX9,GH9B1,BC6,CESA3,BC7,CESA1,CESA7,GH9B3,GH9B16,RSUS3,CESA8	OsIRX14, OsGT43J, GT43J, OsGT43J/OsIRX14,OsIRX9, OsGT43C/OsIRX9, OsGT43C,OsGH9B1,Bc6*, Bc6, OsCesA9, CESA9, OsCESA9, OS_CESA09, OsCesA 9, CesA9, BC88, SDBC1, OsSDBC1,OsCesA3, OsCESA3, OS_CESA03,OsCesA4, OsCESA4, CESA4, OS_CESA04, BC11, bc7t, Bc7(t), bc-7, OsCesA 4, CesA4, FC17/CESA4, FC17, OsFC17,OsCesA1, OsCesA-1, OsCESA1, OS_CESA01, CesA1,OsCesA7, OsCESA7, OS_CESA07, OsCesA 7, CesA7,OsGH9B3,OsGH9B16,RSus3(t), SUS3, SS3, OsScS3, RSs3, RSus3, OsSUS3, RSS3, OsEnS-111, Susy3, OsSusy3,OsCesA8, OsCESA8, OS_CESA08, CesA8
44878	29051769	He Z., Zeng J., Ren Y., Chen D., Li W., Gao F., Cao Y., Luo T., Yuan G., Wu X., Liang Y., Deng Q., Wang S., Zheng A., Zhu J., Liu H., Wang L., Li P., Li S.	OsGIF1 Positively Regulates the Sizes of Stems, Leaves, and Grains in Rice.	Front Plant Sci	8	1730	2017	GIF3	OsGIF3, OsGIF1, GIF1, MKB3
44879	29106954	Huang L., Jia J., Zhao X., Zhang M., Huang X., E Ji, Ni L., Jiang M.	The ascorbate peroxidase APX1 is a direct target of a zinc finger transcription factor ZFP36 and a late embryogenesis abundant protein OsLEA5 interacts with ZFP36 to co-regulate OsAPX1 in seed germination in rice.	Biochem. Biophys. Res. Commun.	495(1)	339-345	2018	APX2,BSRD1,LEA8	OsAPX2, OsAPx02, APXb, OsAPx2, OSAPX2, APx2, cAPX, OsAPX1, APX1,ZFP36, OsZFP36, OsBSRD1, Bsr-d1, BSR-D1, DLN91, OsDLN91,OsLEA8, OsLEA8a, OsLEA8b, OsLEA5, LEA5
44880	29052517	Wu Q., Liu X., Yin D., Yuan H., Xie Q., Zhao X., Li X., Zhu L., Li S., Li D.	Constitutive expression of OsDof4, encoding a C2-C2 zinc finger transcription factor, confesses its distinct flowering effects under long- and short-day photoperiods in rice (Oryza sativa L.).	BMC Plant Biol.	17(1)	166	2017	RFT1,_,HD3A,SE1,EF1	FT-L 3, OsFTL3, FTL3, FT-L3, RFT, OsRFT1,OsDof4, Dof4, OsDof-4, Dof-4, OsDof3, Dof3,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, OsHd1,  Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 
44881	29045801	Rekha K., Baskar B., Srinath S., Usha B.	Plant-growth-promoting rhizobacteria Bacillus subtilis RR4 isolated from rice rhizosphere induces malic acid biosynthesis in rice roots.	Can. J. Microbiol.	64(1)	20-27	2018	ALMT1 ,MS	OsALMT1 ,MLS, OsMLS, OsMS, OsMST, MST
44882	29158635	Rossatto T., do Amaral MN., Benitez L.C., Vighi I.L., Braga E.J.B., de Magalh?es J?nior AM., Maia M.A.C., da Silva Pinto L.	Gene expression and activity of antioxidant enzymes in rice plants, cv. BRS AG, under saline stress.	Physiol Mol Biol Plants	23(4)	865-875	2017	APX1,SODCC1,FSD1.1 ,SOD2,CATB,_,SODCC2,SOD4,GR2	OsAPX1, APXa, OsAPXa, OsAPx01, OsAPx1, OSAPX1, APx1, cAPX, APX2, cAPXa, OscAPXa,sodCc1, SODCC.1, sodA, RSODA, OsSOD1, OsCSD2, OsSodA, SodCc2, OsSODA1, SODCc1-Cu/Zn, OsCu/Zn-SOD2, Cu/Zn-SOD2, OsCSD1.2, CSD1.2, OsSODCc1-Cu/Zn, SODCc1-Cu/Zn, CuZnSOD1, Cu/ZnSOD1, OsCu/ZnSOD1, OsCSD4, CDS4, CuZnSOD4, OsCuZnSOD1, OsCSD1, CSD1, OsSOD2,OsFSD1.1, OsSOD-Fe, SOD-Fe, FeSOD1, OsFSD2, FSD2,OsSOD2, OsSOD2-Cu/Zn, SOD2-Cu/Zn, OsCSD3, CSD3, CuZnSOD3, OsCSD2, CSD2, Cu/Zn-SOD2,CatB, CAT-B, OsCatB, OsCATB, OsCAT1B, CAT1B, CAT2, OsCAT2,SOD, OsSOD-Cu/Zn, SOD-Cu/Zn, OsaCCS, OsCCS, CCS,Cu/Zn-SOD, Cu/Zn- SOD, OsCu-ZnSOD2, Cu-ZnSOD2, OsSODB, OsSOD3, SodCc2, Os SodCc2, sodB, OsSodB, RSODB, OssodCc1, OsCSD1.1, CSD1.1, OsCDS1, OsSOD3-CU/Zn, SOD3-CU/Zn, CuZnSOD2, Cu/ZnSOD2, OsCu/ZnSOD2, OsCSD1, CSD1, CuZnSOD1, OsCuZnSOD2, OsCSD4, CSD4, OsCSD3, CSD3, Cu/Zn-SOD3,OsSOD4, OsCSD4, OsCu/Zn-SOD1, Cu/Zn-SOD1, OsCSD2, CSD2, OsSOD4-Cu/Zn, SOD4-Cu/Zn, Cu/ZnSOD3, CuZnSOD3, sodCp, OssodCp, OsCu/ZnSOD3, CuZnSOD2, OsSOD1,OsGR2, RGRC2, OsGR, OsGR3, OsRGRC2
44883	29114253	Ma Y., Zhao Y., Shangguan X., Shi S., Zeng Y., Wu Y., Chen R., You A., Zhu L., Du B., He G.	Overexpression of OsRRK1 Changes Leaf Morphology and Defense to Insect in Rice.	Front Plant Sci	8	1783	2017	RLCK216	OsRLCK216, OsRRK1, RRK1
44884	29163588	Volante A., Desiderio F., Tondelli A., Perrini R., Orasen G., Biselli C., Riccardi P., Vattari A., Cavalluzzo D., Urso S., Ben Hassen M., Fricano A., Piffanelli P., Cozzi P., Biscarini F., Sacchi G.A., Cattivelli L., Val? G.	Genome-Wide Analysis of japonica Rice Performance under Limited Water and Permanent Flooding Conditions.	Front Plant Sci	8	1862	2017		
44885	29039754	El Mannai Y., Akabane K., Hiratsu K., Satoh-Nagasawa N., Wabiko H.	The NAC transcription factor gene OsY37 (ONAC011) Promotes leaf senescence and Accelerates Heading Time in Rice.	Int J Mol Sci	18(10)		2017	Y37	NAC11, ONAC011, ONAC11, OMTN4, OsY37, OsY37N, OsY37I, OsNAC1, DLN172, OsDLN172, OsNAC092, NAC092, OsNAC92, NAC92
44886	29035318	Jehanzeb M., Zheng X., Miao Y.	The Role of the S40 Gene Family in leaf senescence.	Int J Mol Sci	18(10)		2017	S40-8,S40-10,S40-9,S40-11,S40-5,S40-16,S40-14,S40-12,S40-4,S40-6,S40-3,S40-2,S40-15,S40-1 ,S40-13,S40-7	OsS40-8,OsS40-10,OsS40-9,OsS40-11,OsS40-5,OsS40-16,OsS40-14,OsS40-12,OsS40-4,OsS40-6,OsS40-3,OsS40-2,OsS40-15,Dfu584, Duf584, OsS40-1,OsS40-13,OsS40-7
44887	29048565	Ma Y., Yang C., He Y., Tian Z., Li J.	Rice OVATE family protein 6 regulates plant development and confers resistance to drought and cold stresses.	J. Exp. Bot.	68(17)	4885-4898	2017	RAU1,PIN10A,PIN9,ATP6,PIN1C,FBOX206,LRA1,TIR1,SODB,SODCC2,OFP4,IAA1,PIN1B	OsLAX1, OsRAU1, OsAUX1, LAX1, AUX1,PIN3A, OsPIN3a, OsPIN3t, OsPIN10a, OsPIN3,OsPIN9,atp6, OsPOX1, prx3, POX1,PIN1B, OsPIN1B, OsPIN1b, OsPIN1c,OsAFB2, ABF2, OsAFB2-1, OsAFB2-2, OsFbox206, Os_F0492, OsTIR1, TIR1,  OsFBL16, FBL16,OsPIN2, PIN2, OsLRA1, WAR1, OsWAR1,OsTIR1, OsFbox248, Fbox248, Os_F071, AFB,  OsFBL21, FBL21,SodB, Fe-SOD, Fe- SOD, OsFe-SOD, Fe+-SOD, OsFe+-SOD, OsFe-SODa, OsFe-SODb, OsFeSODb, FeSODb, OsFSD1.2, FSD1.2, FeSOD2, OsFSD2, FSD2, OsFSD1, FSD1, ALM1, OsALM1,Cu/Zn-SOD, Cu/Zn- SOD, OsCu-ZnSOD2, Cu-ZnSOD2, OsSODB, OsSOD3, SodCc2, Os SodCc2, sodB, OsSodB, RSODB, OssodCc1, OsCSD1.1, CSD1.1, OsCDS1, OsSOD3-CU/Zn, SOD3-CU/Zn, CuZnSOD2, Cu/ZnSOD2, OsCu/ZnSOD2, OsCSD1, CSD1, CuZnSOD1, OsCuZnSOD2, OsCSD4, CSD4, OsCSD3, CSD3, Cu/Zn-SOD3,OsOFP4, OsOFP06, OsOFP6, OFP6,OsIAA1, OsIAA4,PIN1A, OsPIN1A, OsPIN1a, REH1, OsPIN1, OsPIN1b, REH1/OsPIN1
44888	28977024	Zheng L., Zhang C., Shi C., Yang Z., Wang Y., Zhou T., Sun F., Wang H., Zhao S., Qin Q., Qiao R., Ding Z., Wei C., Xie L., Wu J., Li Y.	Rice stripe virus NS3 protein regulates primary miRNA processing through association with the miRNA biogenesis factor OsDRB1 and facilitates virus infection in rice.	PLoS Pathog.	13(10)	e1006662	2017	PT6,DRB1-1,D3,SULTR2;2,MIR528,DRB6,DRB5,DRB1-3,HYL1,RL89,SODCC2,AGO1A	OsPT6, PHT1-6, OsPht1;6, OsLPT6:1, OsLPT1, OsPT6:1, Pht1;6, LPT6:1, LPT1, PT6:1,OsDRB1c, DRB1c, DRB1C, OsDRB1-1,d3, dwf3, D3/OsMAX2, Os_F0760, SOL1, OsORE9, ORE9, MAX2, OsRFPH2-10, RFPH2-10, OsD3,  OsFBL27, FBL27,OsSultr2;2, OsSul2;2, OsaSULTR2;1, SULTR2;1, OsSULTR2;1,miR528, Osa-miR528, OsmiR528, OsMIR528, osa-MIR528, miR528*, osa-miR528, osa-miR528-5p, MIR528-T1, MIR528-T2,OsDRB4, DRB4, OsDRB6,OsDRB3, DRB3, OsDRB5,OsRBP, OsDRB1b, DRB1b, OsDRB1-3,OsDRB1a, DRB1a, OsHYL1, OsDRB1-2, DRB1-2,OsDRB2, DRB2, OsRL89, SRL10, OsSRL10,Cu/Zn-SOD, Cu/Zn- SOD, OsCu-ZnSOD2, Cu-ZnSOD2, OsSODB, OsSOD3, SodCc2, Os SodCc2, sodB, OsSodB, RSODB, OssodCc1, OsCSD1.1, CSD1.1, OsCDS1, OsSOD3-CU/Zn, SOD3-CU/Zn, CuZnSOD2, Cu/ZnSOD2, OsCu/ZnSOD2, OsCSD1, CSD1, CuZnSOD1, OsCuZnSOD2, OsCSD4, CSD4, OsCSD3, CSD3, Cu/Zn-SOD3,OsAGO1a, AGO1a, AGO10, AGO1-1 
44889	29123535	Prasanth V.V., Babu M.S., Basava R.K., Tripura Venkata VGN., Mangrauthia S.K., Voleti S.R., Neelamraju S.	Trait and Marker Associations in Oryza nivara and O. rufipogon Derived Rice Lines under Two Different Heat Stress Conditions.	Front Plant Sci	8	1819	2017		
44890	29084903	Chou H.L., Tian L., Kumamaru T., Hamada S., Okita T.W.	Multifunctional RNA binding protein OsTudor-SN in Storage Protein mRNA Transport and Localization.	Plant Physiol.	175(4)	1608-1623	2017	RBP61,VDAC1,EIF3G,EXPB3,GRP3,TSN,_,_,_,PLS2,_,_,_,_	RBP-61, OsRBP61, OsPTB2, PTB2,OSVDAC1, osvdac1, OsVDAC1,eIF-3g, OseIF3g, RBP-43 ,OsEXPB3, osaEXPb1.10, EXPb1.10,OsGRP3, RTP, RBP-152 ,Rp120, OsTSN,RBP-157,OsTFIIS-like gene, OsMed26_3, Med26_3,,RBP-59, OsRBP-59, OsPLS2, HeFP, OsHeFP, OsDNA2_7, DNA2_7,OsRH52B, RH52B, RBP-100 ,RBP-23,RBP-159 ,LTPL163
44891	29158625	Wang X., Wang F., Chen H., Liang X., Huang Y., Yi J.	Comparative genomic hybridization and transcriptome sequencing reveal that two genes, OsI_14279 (LOC_Os03g62620) and OsI_10794 (LOC_Os03g14950) regulate the mutation in the gamma-rl rice mutant.	Physiol Mol Biol Plants	23(4)	745-754	2017	_,LEA7	OspPLAIIIalpha, pPLAIIIalpha,OsLEA7, OsLEA7a, OsLEA7b, OsLEA7c
44892	29100789	Almadanim M.C., Gon?alves NM., Rosa M.T.G., Alexandre B.M., Cordeiro A.M., Rodrigues M., Saibo N.J.M., Soares C.M., Rom?o CV., Oliveira M.M., Abreu I.A.	The rice cold-responsive calcium-dependent protein kinase OsCPK17 is regulated by alternative splicing and post-translational modifications.	Biochim. Biophys. Acta	1865(2)	231-246	2018	CDPK17	OsCDPK17, OsCPK17, CPK17, OsCPK17.1, OsCPK17.2, OsCPK17.3, OsCPK17.4, OsCPK17.5
44893	29045007	Li C., Liu Y., Shen W.H., Yu Y., Dong A.	Chromatin-remodeling factor OsINO80 is involved in regulation of gibberellin biosynthesis and is crucial for rice plant growth and development.	J Integr Plant Biol			2017	_,_,CPS1,D18,KAO,_,INO80	OsH2A.Z, H2A.Z,HTA705,OsCPS1, OsCPS1ent, OsCPS, Os CPS1, OsTPS4, TPS4, TPS29, OsTPS29, OsCPS1-L, OsCPS1-S,d18-h  (d18-I, d18h), dwf15, d25, d18, d18-k, d18-AD, d18-dy, OsGA3ox2, ga3ox2, OsGA3OX2, GA3OX2, OsGA3ox-2, GA3ox-2, GA3ox1,OsKAO, kao, CYP88A5, OSKAO, Os KAO, RPE1, KO1,HTA713 ,OsINO80, CHR732, OsCHR732
44894	28723420	Rosas-Santiago P., Lagunas-Gomez D., Y??ez-Dom?nguez C., Vera-Estrella R., Zimmermannov? O., Sychrov? H., Pantoja O.	Plant and yeast cornichon possess a conserved acidic motif required for correct targeting of plasma membrane cargos.	Biochim. Biophys. Acta	1864(10)	1809-1818	2017	HKT6,_	OsHKT6, OsHKT1;3, HKT1;3, OsHKT1;3_FL, OsHKT1;3_V1, OsHKT1;3_V2, OsHKT1;3_V3, OsHKT1;3_V4, OsHKT1;3_V5,OsCNIH1, CNIH1
44895	29090013	Tao J., Sun H., Gu P., Liang Z., Chen X., Lou J., Xu G., Zhang Y.	A sensitive synthetic reporter for visualizing cytokinin signaling output in rice.	Plant Methods	13	89	2017	RR5,RR12,RR11,RR13,RR8,RR2,RR6,_,RR1,RR7,RR3,RR10,RR9,RR4	rr5, OsRR5, Rra4, OsRRA4,OsRR12, Rra11, OsRR8, RR8, OsRRA11,OsRR11, Rra8, OsRRA8, RR8,OsRR13, Rra12, OsRR12, OsRRA12, RR12,rr8, OsRR8, Rra13, OsRR15, RR15, OsRRA13,rr2, Osrr2, OsRR2, Rra10, OsRRA10,OsRR6, rr6, Rra6, OsRRA6,OsRR41, RR41, Rra14, OsRR14, RR14, OsRRA14, OsEnS-54,rr1, OsRR1, Rra9, OsRRA9,rr7, OsRR7, Rra5, OsRRA5,OSRR3, OsRR3, rr3, Rra7, OsRRA7,OsRR10, Rra2, OsRRA2, RR2,OsRR9, Rra1, OsRRA1, OsRR10, RR10,rr4, OsRR4, Rra3, OsRRA3
44896	29163593	Wang F.Z., Chen M.X., Yu L.J., Xie L.J., Yuan L.B., Qi H., Xiao M., Guo W., Chen Z., Yi K., Zhang J., Qiu R., Shu W., Xiao S., Chen Q.F.	OsARM1, an R2R3 MYB transcription factor, Is Involved in Regulation of the Response to Arsenic Stress in Rice.	Front Plant Sci	8	1868	2017	ARM1,LSI6,MDR7,LSI1,LSI2,PDR2,MRP9	OsMYB-1, MYB-1, MYB1, OsARM1, Os2R_MYB56, 2R_MYB56, OsMYBxoc1, MYBxoc1,Lsi6, OsNIP2;2, NIP2-2, OsLsi6, OsNIP2.2/OsLsi6, OsNIP2.2, NIP2.2,MDR4, OsABCB5, ABCB5, OsPGP5, OsMDR7, OsISC28, MRP4, OsMRP4, OsABCB11, ABCB11, MR7, OsMR7,lsi1, NIP2-1, OsNIP2;1, NIP2;1, OsLsi1, lsi(t), OsNIP2.1/OsLsi1/OsSIIT1, OsNIP2.1, NIP2.1,Lsi2, SIET1, OsLsi2, OsSIET1,ABCG41, OsABCG41, OsPDR2, OsABCG41_1, OsABCG41_2,OsABCC9, ABCC9, OsMRP9, OsABCC14, ABCC14 
44897	28994391	Zhao S., Hong W., Wu J., Wang Y., Ji S., Zhu S., Wei C., Zhang J., Li Y.	A viral protein promotes host SAMS1 activity and ethylene production for the benefit of virus infection.	Elife	6		2017	EIN2,SAMS1	OsEIN2, MHZ7/OsEIN2, OsEIN2/MHZ7, MHZ7 ,OsSAMS1, OS-SAMS1, OsSAMS, SAM, SAMS
44898	28988107	Chen Y., Zhou X., Chang S., Chu Z., Wang H., Han S., Wang Y.	Calcium-dependent protein kinase 21 phosphorylates 14-3-3 proteins in response to ABA signaling and salt stress in rice.	Biochem. Biophys. Res. Commun.	493(4)	1450-1456	2017	CDPK21,ALDH18B2,LEA3-1,GID2,BZIP23	OsCDPK21, OsCPK21, CPK21, CPK-21,P5CS2, OsP5CS2, OsALDH18B2 ,OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3, OsLEA3A, LEA3A,gid2, GF14e, OsGF14e, OsGID2, 14-3-3e,OsbZIP23, OsAREB1, OsABF2, Osbzip23, OsAREB2, OsZIP23, ZIP23
44899	29016913	Uraguchi S., Tanaka N., Hofmann C., Abiko K., Ohkama-Ohtsu N., Weber M., Kamiya T., Sone Y., Nakamura R., Takanezawa Y., Kiyono M., Fujiwara T., Clemens S.	Phytochelatin Synthase has Contrasting Effects on Cadmium and Arsenic Accumulation in Rice Grains.	Plant Cell Physiol.	58(10)	1730-1742	2017	PCS1,PCS5	OsPCS1, OsPCS2, PCS2, OsPCS15, PCS15,OsPCS, PCS, OsPCS2, PCS2, OsPCS2a, PCS2a, OsPCS2b, PCS2b, OsPCS1, PCS1, OsPCS1a, OsPCS1b, OsPCS1c, OsPCS1full, OsPCS5
44900	29047257	Piao W., Han S.H., Sakuraba Y., Paek N.C.	Rice 7-Hydroxymethyl Chlorophyll a Reductase Is Involved in the Promotion of Chlorophyll Degradation and Modulates Cell Death Signaling.	Mol. Cells	40(10)	773-786	2017	NYC1,NYC3,SPL-HM143,SGR,NOL,RCCR1,EAS1 	nyc1, OsNYC1,nyc3, OsNYC3, PPH,OsHCAR, HCAR,sgr(t), sgr, OsSGR, OsSgr, SGR1, OsSGR1,nol, NOL1, OsNOL, OsNOL1,OsRCCR1, OsRCCR, RCCR,OsPAO, PAO, OsACD1, ACD1, OsEAS1, RCD2, OsRCD2
44901	29082724	Ren B., Yan F., Kuang Y., Li N., Zhang D., Lin H., Zhou H.	[Specificity and inheritance of rBE3 and rBE4 endonuclease-induced gene modifications in rice].	Sheng Wu Gong Cheng Xue Bao	33(10)	1776-1785	2017		
44902	28931938	Feng F., Mei H., Fan P., Li Y., Xu X., Wei H., Yan M., Luo L.	Dynamic transcriptome and phytohormone profiling along the time of light exposure in the mesocotyl of rice seedling.	Sci Rep	7(1)	11961	2017		
44903	28878216	Batista R., Fonseca C., Planchon S., Negr?o S., Renaut J., Oliveira M.M.	Environmental stress is the major cause of transcriptomic and proteomic changes in GM and non-GM plants.	Sci Rep	7(1)	10624	2017		
44904	28980929	Kariminik A., Saeidi M., Parsia P.	Cloning and expression of rice glutamate decarboxylase (GAD) in Escherichia coli.	Cell. Mol. Biol. (Noisy-le-grand)	63(9)	106-108	2017		
44905	28889752	Le T.B., Han C.S., Cho K., Han O.	Covalent immobilization of oxylipin biosynthetic enzymes on nanoporous rice husk silica for production of cis(+)-12-oxophytodienoic acid.	Artif Cells Nanomed Biotechnol		1-7	2017		
44906	28947705	Bizimana J.B., Luzi-Kihupi A., W Murori R., Singh R.K.	Identification of quantitative trait loci for salinity tolerance in rice (Oryza sativa L.) using IR29/Hasawi mapping population.	J. Genet.	96(4)	571-582	2017		
44907	28947315	Hao Y., Ma C., Zhang Z., Song Y., Cao W., Guo J., Zhou G., Rui Y., Liu L., Xing B.	Carbon nanomaterials alter plant physiology and soil bacterial community composition in a rice-soil-bacterial ecosystem.	Environ. Pollut.	232	123-136	2018		
44908	28947784	Pei W., Jain A., Sun Y., Zhang Z., Ai H., Liu X., Wang H., Feng B., Sun R., Zhou H., Xu G., Sun S.	OsSIZ2 exerts regulatory influences on the developmental responses and phosphate homeostasis in rice.	Sci Rep	7(1)	12280	2017		
44909	28922368	Jayaswal P.K., Dogra V., Shanker A., Sharma T.R., Singh N.K.	A tree of life based on ninety-eight expressed genes conserved across diverse eukaryotic species.	PLoS ONE	12(9)	e0184276	2017		
44910	28887709	Chang T.S., Liu C.W., Lin Y.L., Li C.Y., Wang A.Z., Chien M.W., Wang C.S., Lai C.C.	Mapping and comparative proteomic analysis of the starch biosynthetic pathway in rice by 2D PAGE/MS.	Plant Mol. Biol.	95(4-5)	333-343	2017		
44911	28952045	Zhang S., He X., Zhao J., Cheng Y., Xie Z., Chen Y., Yang T., Dong J., Wang X., Liu Q., Liu W., Mao X., Fu H., Chen Z., Liao Y., Liu B.	Identification and validation of a novel major QTL for harvest index in rice (Oryza sativa L.).	Rice (N Y)	10(1)	44	2017		
44912	28965833	Sun W., Gao D., Xiong Y., Tang X., Xiao X., Wang C., Yu S.	Hairy Leaf 6, an AP2/ERF Transcription Factor, Interacts with OsWOX3B and Regulates Trichome Formation in Rice.	Mol Plant	10(11)	1417-1433	2017	YUCCA5,ARF7,PLT2,GL1,PIN1A,ARF2	OsYUCCA5, OsYUC5, YUC5,OsARF7,OsPLT2, AP2/EREBP#060, AP2/EREBP60, HL6, OsHL6,gl1, NUDA/GL-1, NUDA/GL1, NUDA, GL-1, OsWOX3B, OsWOX2, OsWOX3, Os WOX3, WOX3B, WOX2, WOX3, LSY1, OsLSY1, DEP, OsDEP,PIN1C, OsPIN1C, OsPIN1c, OsPIN1a,OsARF2, OsARF4, ARF4
44913	29085243	Wang S.S., Chen R.K., Chen K.Y., Liu C.Y., Kao S.M., Chung C.L.	Genetic mapping of the qSBN7 locus, a QTL controlling secondary branch number per panicle in rice.	Breed. Sci.	67(4)	340-347	2017		
44914	28979283	Yuan J., Meng J., Liang X., E Y., Yang X., Chen W.	Organic Molecules from Biochar Leacheates Have a Positive Effect on Rice Seedling cold tolerance.	Front Plant Sci	8	1624	2017	DREB1B,NCA1A,WRKY76,DREB1A,SAP8,2R_MYB36 	OsDREB1B, ERF31, OsERF031, OsERF#031, OsERF31, AP2/EREBP#169, AP2/EREBP169, OsDREB1b, OsDREB1C, OsCBF1, CBF1,OsCOIN, COIN, OsNCA1a, NCA1a,  OsRING1, RING1,OsWRKY76, OsWRKY76.1, OsWRKY76.2, OsWRKY76.3,OsDREB1A, Os DREB1A, CBF3, OsCBF3, OsDREB1A/OsCBF3, ERF24, OsERF24, OsERF024, OsERF#024, AP2/EREBP#114, AP2/EREBP114, OsDREBL,Osi-SAP8, OsiSAP8, OsSAP8, OsSAP1, SAP1,OsMYB2, MYB2, Os2R_MYB36 
44915	28900732	Arya P., Acharya V.	Plant STAND P-loop NTPases: a current perspective of genome distribution, evolution, and function : Plant STAND P-loop NTPases: genomic organization, evolution, and molecular mechanism models contribute broadly to plant pathogen defense.	Mol. Genet. Genomics	293(1)	17-31	2018		
44916	28910327	Kaur A., Pati P.K., Pati A.M., Nagpal A.K.	In-silico analysis of cis-acting regulatory elements of pathogenesis-related proteins of Arabidopsis thaliana and Oryza sativa.	PLoS ONE	12(9)	e0184523	2017	CAL1,POX22.3,PR1A,RSOSPR10,_,GNS4	OsCPT1, CPT1, DEFL7, OsDEFL7, OsDf-07, Df-07, OsPR12, PR12, DEF7, OsDEF7, OsAFP1, AFP1, OsPDF2.2, PDF2.2,POX22.3, OSPER, OsPOX, POX, Pir3, prx111, POX22, OsPOX1, POX1, OsPOX22.3, OsPR9, PR9,OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1, OsPR1b, PR1alpha, OsPR1alpha,RSOsPR10, RsOsPR10a, OsPR10a, OsPR10alpha, OsPR10, PR10, OsBETV1, BETV1,OsPR5, PR5,OsPR2, PR2, Gns4, OsGns4, OsGLN2
44917	28969805	Nakamura Y., Ono M., Sawada T., Crofts N., Fujita N., Steup M.	Characterization of the functional interactions of plastidial starch phosphorylase and starch branching enzymes from rice endosperm during reserve starch biosynthesis.	Plant Sci.	264	83-95	2017		
44918	28932234	Jiang C.J., Liu X.L., Liu X.Q., Zhang H., Yu Y.J., Liang Z.W.	Stunted Growth Caused by blast disease in Rice Seedlings Is Associated with Changes in Phytohormone Signaling Pathways.	Front Plant Sci	8	1558	2017		
44919	28887658	Okada S., Suehiro M., Ebana K., Hori K., Onogi A., Iwata H., Yamasaki M.	Genetic dissection of grain traits in Yamadanishiki, an excellent sake-brewing rice cultivar.	Theor. Appl. Genet.	130(12)	2567-2585	2017		
44920	28922746	Cheng M.L., Lo S.F., Hsiao A.S., Hong Y.F., Yu S.M., Ho T.D.	Ectopic Expression of WINDING 1 Leads to Asymmetrical Distribution of Auxin and a Spiral Phenotype in Rice.	Plant Cell Physiol.	58(9)	1494-1506	2017	WIN1	BTBN6,  OsBTBN6, BTBN6
44921	28821187	Puram V.R.R., Ontoy J., Linscombe S., Subudhi P.K.	Genetic Dissection of Seedling Stage Salinity Tolerance in Rice Using Introgression Lines of a Salt Tolerant Landrace Nona Bokra.	J. Hered.	108(6)	658-670	2017		
44922	29033966	Wang Z., Hong X., Hu K., Wang Y., Wang X., Du S., Li Y., Hu D., Cheng K., An B., Li Y.	Impaired Magnesium protoporphyrin IX Methyltransferase (ChlM) Impedes Chlorophyll Synthesis and Plant Growth in Rice.	Front Plant Sci	8	1694	2017	YGL18 	ChlM, CHLM, MgMT, OsYGL18,OsChlM, OsCHLM, OsMgMT
44923	28950768	Yaguchi T., Kinami T., Ishida T., Yasuhara T., Takahashi K., Matsuura H.	Induction of plant disease resistance upon treatment with yeast cell wall extract.	Biosci. Biotechnol. Biochem.	81(11)	2071-2078	2017		
44924	28895580	Ordonio R.L., Matsuoka M.	New path towards a better rice architecture.	Cell Res.	27(10)	1189-1190	2017		
44925	29031162	Wang Y., Lin H., Tong X., Hou Y., Chang Y., Zhang J.	DNA demethylation activates genes in seed maternal integument development in rice (Oryza sativa L.).	Plant Physiol. Biochem.	120	169-178	2017		
44926	28951488	Liu H., Ravichandran S., Teh O.K., McVey S., Lilley C., Teresinski H.J., Gonzalez-Ferrer C., Mullen R.T., Hofius D., Prithiviraj B., Stone S.L.	The RING-Type E3 Ligase XBAT35.2 Is Involved in Cell Death Induction and Pathogen Response.	Plant Physiol.	175(3)	1469-1483	2017		
44927	28963534	Misra G., Badoni S., Anacleto R., Graner A., Alexandrov N., Sreenivasulu N.	Whole genome sequencing-based association study to unravel genetic architecture of cooked grain width and length traits in rice.	Sci Rep	7(1)	12478	2017	_,_,_,SPARK8,_,_,NAC10,_,_,_,_	,OsFbox557, Fbox557, Os_F0256,  OsFBX389, FBX389,,OsSPARK8,,,ONAC010, ONAC10, OsSTA199, OsNAC3, NAC3,,OsMed34_2, Med34_2,,
44928	28951734	Zheng Z., Yang X., Fu Y., Zhu L., Wei H., Lin X.	Overexpression of PvPin1, a Bamboo Homolog of Pin1-Type Parvulin 1, Delays flowering time in Transgenic Arabidopsis and Rice.	Front Plant Sci	8	1526	2017		
44929	28979287	Moyle R.L., Carvalhais L.C., Pretorius L.S., Nowak E., Subramaniam G., Dalton-Morgan J., Schenk P.M.	An Optimized Transient Dual Luciferase Assay for Quantifying MicroRNA Directed Repression of Targeted Sequences.	Front Plant Sci	8	1631	2017		
44930	28878591	Braumann I., Dockter C., Beier S., Himmelbach A., Lok F., Lundqvist U., Skadhauge B., Stein N., Zakhrabekova S., Zhou R., Hansson M.	Mutations in the gene of the Galpha subunit of the heterotrimeric G protein are the cause for the brachytic1 semi-dwarf phenotype in barley and applicable for practical breeding.	Hereditas	155	10	2018		
44931	29018471	Yin C.C., Zhao H., Ma B., Chen S.Y., Zhang J.S.	Diverse Roles of Ethylene in Regulating Agronomic Traits in Rice.	Front Plant Sci	8	1676	2017		
44932	28966624	Saha A., Das S., Moin M., Dutta M., Bakshi A., Madhav M.S., Kirti P.B.	Genome-Wide Identification and Comprehensive Expression Profiling of Ribosomal Protein Small Subunit (RPS) Genes and their Comparative Analysis with the Large Subunit (RPL) Genes in Rice.	Front Plant Sci	8	1553	2017	UBQ5,_,RPS27,_,RPS18B,RPS3AC,RPS29,_,RPS30,RPS10A,RPS18A,RPS9-2,RPS17,_,RPS5,RPS26,RPS23A,_,RPS15A,RPS28 ,RPS6A,_,RPS7A,RPS25,RPS24,_,_,_,_,_,_,RPS4,_,_	RPS27a, OsUBQ5, OsRPS27a,RPS9, OsRPS9,OsRPS27,RPS5,RPS18b,RPS3a, Os RPS3a, RPS3aC, OsRPS3aC,OsRPS29,RPS6, OsRPS6,OsRPS30,RPS10a, OsRPS10a,RPS18a, OsRPS18a,OsRPS9-2,OsRPS17,RPS4,RPS5A, OsRPS5, OsRPS5A,OsRPS26,RPS23a, OsRPS23a,RPS18, OsRPS18,RPS15a, OsRPS15a   ,OsRPS28, OsRPS28e, RPS28e,RPS6, RPS6a, OsRPS6A, OsRPS6, OsRPS6a,RPS10, OsRPS10,RPS7a, OsRPS7a,RPS25, RPS25a, OsRPS25, OsRPS25a ,OsRPS24,RPS25, OsRPS25,RPS13, RPS13a, OsRPS13, OsRPS13a,RPS7, OsRPS7,RPS13, OsRPS13,rig, RPS15, OsRPS15,RPS23, OsRPS23,rps4, RPS4a ,RPS21, OsRPS21,RPS4, RPS19, OsRPS4, OsRPS19 
44933	28903074	Datta M., Kaushik S., Jyoti A., Mathur N., Kothari S.L., Jain A.	SIZ1-mediated SUMOylation during phosphate homeostasis in plants: Looking beyond the tip of the iceberg.	Semin. Cell Dev. Biol.			2017		
44934	28874677	Islam F., Farooq M.A., Gill R.A., Wang J., Yang C., Ali B., Wang G.X., Zhou W.	2,4-D attenuates salinity-induced toxicity by mediating anatomical changes, antioxidant capacity and cation transporters in the roots of rice cultivars.	Sci Rep	7(1)	10443	2017		
44935	28921169	Yeo B.P.H., Bhave M., Hwang S.S.	Effects of acute salt stress on modulation of gene expression in a Malaysian salt-tolerant indigenous rice variety, Bajong.	J. Plant Res.	131(1)	191-202	2018		
44936	29021808	Xiao Y., Liu D., Zhang G., Tong H., Chu C.	Brassinosteroids Regulate OFP1, a DLT interacting protein, to Modulate Plant Architecture and Grain Morphology in Rice.	Front Plant Sci	8	1698	2017	BRD1,GA2OX3,D11,OFP1,BIN2,SD1,BZR1,D18,DLT,D2	brd1, OsDWARF, DWARF, OsBR6ox, BR6ox, CYP85A1, CYP85A4, OsDWF, CYP85A1/OsDWARF, OsBRD1, OsCYP85A1,OsGA2ox3, ga2ox 3, OsGA2ox-3, GA2ox3, GA2ox-3, GA2ox4,d11(d8), dwf10, d8, D11/CYP724B1, d11, CYP724B1, GNS4, OsD11, PMM1, OsPMM1, PMM1/D11, NBG4, OsCPB1, CPB1, CPB1/D11,OsOFP1, OsOFP01,GSK2, Os GSK2, OsGSK2, Os BIN2, OsBIN2, BIN2/GSK2, OsSK22/OsGSK7, OsSK22, OsGSK7, SK22, GSK7, OsSK22/GSK2 ,sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2, OsPHQ1, OsPHq1, PHq1,OsBZR1, Os BZR1, OsBES1-6, BES1-6,d18-h  (d18-I, d18h), dwf15, d25, d18, d18-k, d18-AD, d18-dy, OsGA3ox2, ga3ox2, OsGA3OX2, GA3OX2, OsGA3ox-2, GA3ox-2, GA3ox1,dlt, OsGRAS32, OsDLT, OsDLT1, DTL1, OsGRAS-32, OsGRAS32, GRAS-32, GRAS32, SMOS2/DLT, SMOS2, OsSMOS2, OsGS6, GS6,d2, dwf2, CYP90D2, D2/CYP90D2, OsD2, SMG11, OsSMG11, D2/SMG11, OsD2a, OsD2b
44937	28983307	Yang X., Xia X., Zhang Z., Nong B., Zeng Y., Xiong F., Wu Y., Gao J., Deng G., Li D.	QTL Mapping by Whole Genome Re-sequencing and Analysis of Candidate Genes for Nitrogen Use Efficiency in Rice.	Front Plant Sci	8	1634	2017		
44938	29085249	Segami S., Takehara K., Yamamoto T., Kido S., Kondo S., Iwasaki Y., Miura K.	Overexpression of SRS5 improves grain size of brassinosteroid-related dwarf mutants in rice (Oryza sativa L.).	Breed. Sci.	67(4)	393-397	2017	D2,TID1,D61	d2, dwf2, CYP90D2, D2/CYP90D2, OsD2, SMG11, OsSMG11, D2/SMG11, OsD2a, OsD2b,OsTID1, TubA2, SRS5, OS-TubA2, OsTubA2, OsSRS5, ,d61*, dwf42, d61, OsBRI1, OSBRI1, BRI1, Os BRI1, Osbri1, OsBRKq1, BRKq1
44939	28905253	Kumari M., Rai A.K., Devanna B.N., Singh P.K., Kapoor R., Rajashekara H., Prakash G., Sharma V., Sharma T.R.	Co-transformation mediated stacking of blast resistance genes Pi54 and Pi54rh in rice provides broad spectrum resistance against Magnaporthe oryzae.	Plant Cell Rep.	36(11)	1747-1755	2017		
44940	29163568	Liu X., Zhang K., Zhang Z., Cao Q., Lv Z., Yuan Z., Tian Y., Cao W., Zhu Y.	Canopy Chlorophyll Density Based Index for Estimating Nitrogen Status and Predicting grain yield in Rice.	Front Plant Sci	8	1829	2017		
44941	29045473	Cheah B.H., Jadhao S., Vasudevan M., Wickneswari R., Nadarajah K.	Identification of functionally important microRNAs from rice inflorescence at heading stage of a qDTY4.1-QTL bearing Near Isogenic Line under drought conditions.	PLoS ONE	12(10)	e0186382	2017		
44942	29081784	Kuroha T., Nagai K., Kurokawa Y., Nagamura Y., Kusano M., Yasui H., Ashikari M., Fukushima A.	eQTLs Regulating Transcript Variations Associated with Rapid Internode Elongation in Deepwater Rice.	Front Plant Sci	8	1753	2017		
44943	29057928	Peng P., Liu L., Fang J., Zhao J., Yuan S., Li X.	The rice TRIANGULAR HULL1 protein acts as a transcriptional repressor in regulating lateral development of spikelet.	Sci Rep	7(1)	13712	2017	BLS1	OsBLS1, OsG1L6, G1L6, TH1, OsTH1, TH1/BSG1/BLS1/AFD1, BSG1, OsBSG1, AFD1, OsAFD1, BH1, OsBH1
44944	29030489	Mitchell D., Ritchey L.E., Park H., Babitzke P., Assmann S.M., Bevilacqua P.C.	Glyoxals as in vivo RNA structural probes of guanine base-pairing.	RNA	24(1)	114-124	2018		
44945	29020034	Guan Q., Liao X., He M., Li X., Wang Z., Ma H., Yu S., Liu S.	Tolerance analysis of chloroplast OsCu/Zn-SOD overexpressing rice under NaCl and NaHCO3 stress.	PLoS ONE	12(10)	e0186052	2017		
44946	28985711	Oono Y., Yazawa T., Kanamori H., Sasaki H., Mori S., Matsumoto T.	Genome-wide analysis of rice cis-natural antisense transcription under cadmium exposure using strand-specific RNA-Seq.	BMC Genomics	18(1)	761	2017		
44947	29090429	Rao G.S., Deveshwar P., Sharma M., Kapoor S., Rao K.V.	Evolvement of transgenic male-sterility and fertility-restoration system in rice for production of hybrid varieties.	Plant Mol. Biol.	96(1-2)	35-51	2018		
44948	28971382	Bettembourg M., Dardou A., Audebert A., Thomas E., Frouin J., Guiderdoni E., Ahmadi N., Perin C., Dievart A., Courtois B.	Genome-wide association mapping for root cone angle in rice.	Rice (N Y)	10(1)	45	2017		
44949	28993622	Hilbert L., Neves E.G., Pugliese F., Whitney B.S., Shock M., Veasey E., Zimpel C.A., Iriarte J.	Evidence for mid-Holocene rice domestication in the Americas.	Nat Ecol Evol	1(11)	1693-1698	2017		
44950	29081789	Wang Q., Zhao H., Jiang J., Xu J., Xie W., Fu X., Liu C., He Y., Wang G.	Genetic Architecture of Natural Variation in Rice Nonphotochemical Quenching Capacity Revealed by Genome-Wide Association Study.	Front Plant Sci	8	1773	2017		
44951	29074943	Lu J., Miao Y., Shi W., Li J., Yuan F.	Evaluating different approaches to non-destructive nitrogen status diagnosis of rice using portable RapidSCAN active canopy sensor.	Sci Rep	7(1)	14073	2017		
44952	29035627	Yamauchi T., Fukazawa A., Nakazono M.	METALLOTHIONEIN genes encoding ROS scavenging enzymes are down-regulated in the root cortex during inducible aerenchyma formation in rice.	Plant Signal Behav	12(11)	e1388976	2017	MTI4B,MT1G,MTI3B,MTI4C,MTII1A,MT1F,MT2B,_,MT2A,MTI1B,MTI1A,MTI4A,MTI3A,MTI2B	OsMT1c, MT1c, OsMT-I-4b, MT-I-4b, OsMT1f, MT1f, MT1Lc, OsMT1Lc ,OsMT1g, MT1g, MT1Le, OsMT1Le ,MTd, OsMT-I-3b, OsMT3b, MT-I-3b, MT3b,MT-1-4b, OsMT1d, MT1d, OsMT-I-4c, MT1c, OsMT1c,OsMT4, OsMT-II-1a, MT4, MT-II-1a,OsMT1f, OsMT1c, MT1f, MT1c, MT1Lb, OsMT1Lb ,OsMT2b, MT2b, OsMT-I-2c, MT-I-2c, MT2C, MT2BL, OsMT2C, OsMT2BL, MTE, OsMT2b1, OsMT2b2, MT2b1, MT2b2, MTb, met1, OsMTe, OsMT-I-2c, OsB22EL8, MTe, MT-I-2c, B22EL8,MT1Ld, OsMT1Ld,OsMT2a, MT2a, met6, Osmet6, OsMT-2, MT-2, rgMT-2, OsMT-I-2a, OsMT2-1, MT-I-2a, MT2-1,OsMT1b, MT1b, OsMT-I-1b, OsMTI-1b, MT-I-1b, MTI-1b, MT1La, OsMT1La, OsMT1,MT1a, OsMT1a, OsMT1e, OsMT-I-1a, MT-I-1a, OsMT1e-P, MTa, rgMT, OsMT-1, rgMT-1,OsMT1a, OsMT1a1, OsMT1a2, OsMT-I-4a, OsIDS1, OsMT1b, MT1b,OsMT3a, MT3a, OsMT-I-3a, MT-I-3a, MTe, met2, OsMT3, MT3, OsMTI-3a, MTI-3a,OsMT2c, OsMT-I-2b, MT2c, MT-I-2b, MTc, met5, ricMT, OsMT2
44953	29132026	Moon S., Chandran A.K.N., Gho Y.S., Park S.A., Kim S.R., Yoo Y.H., Jung K.H.	Integrated omics analysis of root-preferred genes across diverse rice varieties including Japonica and indica cultivars.	J. Plant Physiol.	220	11-23	2018		
44954	29059222	Dey A., Samanta M.K., Gayen S., Sen S.K., Maiti M.K.	Correction: Enhanced Gene Expression Rather than Natural Polymorphism in Coding Sequence of the OsbZIP23 Determines Drought Tolerance and Yield Improvement in Rice Genotypes.	PLoS ONE	12(10)	e0187172	2017		
44955	28979832	Biswas P.S., Khatun H., Das N., Sarker M.M., Anisuzzaman M.	Mapping and validation of QTLs for cold tolerance at seedling stage in rice from an indica cultivar Habiganj Boro VI (Hbj.BVI).	3 Biotech	7(6)	359	2017		
44956	29017401	Miyazaki S., Jiang K., Kobayashi M., Asami T., Nakajima M.	Helminthosporic acid functions as an agonist for gibberellin receptor.	Biosci. Biotechnol. Biochem.	81(11)	2152-2159	2017		
44957	29030650	He R., Yu G., Han X., Han J., Li W., Wang B., Huang S., Cheng X.	ThPP1 gene, encodes an inorganic pyrophosphatase in Thellungiella halophila, enhanced the tolerance of the transgenic rice to alkali stress.	Plant Cell Rep.	36(12)	1929-1942	2017		
44958	28938141	Ye X., Li H., Zhang L., Chai R., Tu R., Gao H.	Amendment damages the function of continuous flooding in decreasing Cd and Pb uptake by rice in acid paddy soil.	Ecotoxicol. Environ. Saf.	147	708-714	2018		
44959	29118779	Song Y., Chen Y., Lv J., Xu J., Zhu S., Li M., Chen N.	Development of Chloroplast Genomic Resources for Oryza Species Discrimination.	Front Plant Sci	8	1854	2017		
44960	29158637	Kumar A., Bhowmick P.K., Singh V.J., Malik M., Gupta A.K., Seth R., Nagarajan M., Krishnan S.G., Singh A.K.	Marker-assisted identification of restorer gene(s) in iso-cytoplasmic restorer lines of WA cytoplasm in rice and assessment of their fertility restoration potential across environments.	Physiol Mol Biol Plants	23(4)	891-909	2017		
44961	29075848	Takaiwa F., Yang L., Wakasa Y., Ozawa K.	Compensatory rebalancing of rice prolamins by production of recombinant prolamin/bioactive peptide fusion proteins within ER-derived protein bodies.	Plant Cell Rep.	37(2)	209-223	2018		
44962	29096082	Blasi ?AR., Buffon G., Rativa A.G.S., Lopes M.C.B., Berger M., Santi L., Lavall?e-Adam M., Yates J.R., Schwambach J., Beys-da-Silva WO., Sperotto R.A.	High infestation levels of Schizotetranychus oryzae severely affects rice metabolism.	J. Plant Physiol.	219	100-111	2017		
44963	29118774	Mishra B.S., Jamsheer K M., Singh D., Sharma M., Laxmi A.	Genome-Wide Identification and Expression, Protein-Protein Interaction and Evolutionary Analysis of the Seed Plant-Specific BIG GRAIN and BIG GRAIN LIKE Gene Family.	Front Plant Sci	8	1812	2017	BG3,BG1,BG4,BG2,BGL1	OsaBG3, OsBG3,OsaBG1, OsBG1,OsaBG4, OsBG4,OsaBG2, OsBG2,OsaBGL1, OsBGL1
44964	29114258	Chen H., Zhang Q., Cai H., Xu F.	Ethylene Mediates Alkaline-Induced Rice Growth Inhibition by Negatively Regulating Plasma Membrane H+-ATPase Activity in Roots.	Front Plant Sci	8	1839	2017	SSG6,AHA8,ACS1,ACS2,ACO5,ACO3,ACS5,ACO4,EIN2,_	OsACS6, ACS6,OSA8, OsA8, A8, osAHA8, AHA8, Os-HA1, OsHA1,ACC1*, OsACS1, Os-ACS1, ACC1, OsACC1,OsACS2, Os-ACS2,OsACO5, 2-ODD14, Os2-ODD14, 2ODD14, Os2ODD14,OsACO3, ACO2, OsACO2,OsACS5, OS-ACS5, OsBphi008a,OsACO4,OsEIN2, MHZ7/OsEIN2, OsEIN2/MHZ7, MHZ7 ,OsETOL1, OsSTA97, ETOL1, STA97,  OsBTBT1, BTBT1
44965	29058311	Shu K., Zhou W., Yang W.	APETALA 2-domain-containing transcription factors: focusing on abscisic acid and gibberellins antagonism.	New Phytol.	217(3)	977-983	2018		
44966	28974021	Zhang H., Lv S., Xu H., Hou D., Li Y., Wang F.	H?O? Is Involved in the Metallothionein-Mediated Rice Tolerance to Copper and Cadmium Toxicity.	Int J Mol Sci	18(10)		2017		
44967	29031161	Sihi S., Maiti S., Bakshi S., Nayak A., Chaudhuri S., Sengupta D.N.	Understanding the role of DNA polymerase lambda gene in different growth and developmental stages of Oryza sativa L. indica rice cultivars.	Plant Physiol. Biochem.	120	156-168	2017		
44968	29123537	Meng L., Wang B., Zhao X., Ponce K., Qian Q., Ye G.	Association Mapping of Ferrous, Zinc, and Aluminum Tolerance at the Seedling Stage in Indica Rice using MAGIC Populations.	Front Plant Sci	8	1822	2017		
44969	28983868	Zhang Y., Zhu Q., Yao Y., Zhao Z., Correll J.C., Wang L., Pan Q.	The Race Structure of the Rice Blast Pathogen Across Southern and Northeastern China.	Rice (N Y)	10(1)	46	2017		
44970	29089949	Dong Y., Fang X., Yang Y., Xue G.P., Chen X., Zhang W., Wang X., Yu C., Zhou J., Mei Q., Fang W., Yan C., Chen J.	Comparative Proteomic Analysis of Susceptible and Resistant Rice Plants during Early Infestation by Small Brown Planthopper.	Front Plant Sci	8	1744	2017		
44971	29085070	Bai X., Huang Y., Hu Y., Liu H., Zhang B., Smaczniak C., Hu G., Han Z., Xing Y.	Duplication of an upstream silencer of FZP increases grain yield in rice.	Nat Plants	3(11)	885-893	2017	FZP	fzp*, fzp, OsBD1, BD1, OsERF#078, OsERF078, OsERF78, ERF78, AP2/EREBP#133, AP2/EREBP133, BFL1, SGDP7, OsSGDP7
44972	29064391	Xiang J., Wu H., Zhang Y., Zhang Y., Wang Y., Li Z., Lin H., Chen H., Zhang J., Zhu D.	Transcriptomic Analysis of Gibberellin- and Paclobutrazol-Treated Rice Seedlings under Submergence.	Int J Mol Sci	18(10)		2017		
44973	29051768	Zhang Q., Li C.	Comparisons of Copy Number, Genomic Structure, and Conserved Motifs for alpha-amylase Genes from Barley, Rice, and Wheat.	Front Plant Sci	8	1727	2017		
44974	29077040	Fan Y., Wang T., Qiu Z., Peng J., Zhang C., He Y.	Fast Detection of Striped Stem-Borer (Chilo suppressalis Walker) Infested Rice Seedling Based on Visible/Near-Infrared Hyperspectral Imaging System.	Sensors (Basel)	17(11)		2017		
44975	29037166	Sajjad M., Ma X., Habibullah Khan S., Shoaib M., Song Y., Yang W., Zhang A., Liu D.	TaFlo2-A1, an ortholog of rice FLO2, is associated with thousand grain weight in bread wheat (Triticum aestivum L.).	BMC Plant Biol.	17(1)	164	2017		
44976	29123541	Miro B., Longkumer T., Entila F.D., Kohli A., Ismail A.M.	Rice Seed Germination Underwater: Morpho-Physiological Responses and the Bases of Differential Expression of Alcoholic Fermentation Enzymes.	Front Plant Sci	8	1857	2017		
44977	29065548	Lee H.Y., Back K.	Cadmium Disrupts Subcellular Organelles, Including Chloroplasts, Resulting in Melatonin Induction in Plants.	Molecules	22(10)		2017		
44978	29085383	Catolos M., Sandhu N., Dixit S., Shamsudin N.A.A., Naredo M.E.B., McNally K.L., Henry A., Diaz M.G., Kumar A.	Genetic Loci Governing grain yield and Root Development under Variable Rice Cultivation Conditions.	Front Plant Sci	8	1763	2017		
44979	29024026	Satish M., Nivya M.A., Abhishek S., Nakarakanti N.K., Shivani D., Vani M.V., Rajakumara E.	Computational characterization of substrate and product specificities, and functionality of S-adenosylmethionine binding pocket in histone lysine methyltransferases from Arabidopsis, rice and maize.	Proteins	86(1)	21-34	2018		
44980	29114257	Zhang C., Li H., Wang J., Zhang B., Wang W., Lin H., Luan S., Gao J., Lan W.	The Rice High-Affinity K+ Transporter OsHKT2;4 Mediates Mg2+ Homeostasis under High-Mg2+ Conditions in Transgenic Arabidopsis.	Front Plant Sci	8	1823	2017		
44981	29052022	Honta H., Inamura T., Konishi T., Satoh S., Iwai H.	UDP-arabinopyranose mutase gene expressions are required for the biosynthesis of the arabinose side chain of both pectin and arabinoxyloglucan, and normal leaf expansion in Nicotiana tabacum.	J. Plant Res.			2017		
44982	29078746	Zhang J., Chen K., Pang Y., Naveed S.A., Zhao X., Wang X., Wang Y., Dingkuhn M., Pasuquin J., Li Z., Xu J.	QTL mapping and candidate gene analysis of ferrous iron and zinc toxicity tolerance at seedling stage in rice by genome-wide association study.	BMC Genomics	18(1)	828	2017		
44983	29158633	Basu S., Giri R.K., Benazir I., Kumar S., Rajwanshi R., Dwivedi S.K., Kumar G.	Comprehensive physiological analyses and reactive oxygen species profiling in drought tolerant rice genotypes under salinity stress.	Physiol Mol Biol Plants	23(4)	837-850	2017		
44984	28990717	Khanam S., Bauters L., Singh R.R., Verbeek R., Haeck A., Sultan S.M.D., Demeestere K., Kyndt T., Gheysen G.	Mechanisms of resistance in the rice cultivar Manikpukha to the rice stem nematode Ditylenchus angustus.	Mol. Plant Pathol.			2017		
44985	28910580	Gupta P., De B.	Differential responses of cell wall bound phenolic compounds in sensitive and tolerant varieties of rice in response to salinity.	Plant Signal Behav	12(10)	e1379643	2017		
44986	29040362	Ma S., Song Q., Tao H., Harrison A., Wang S., Liu W., Lin S., Zhang Z., Ai Y., He H.	Prediction of protein-protein interactions between fungus (Magnaporthe grisea) and rice (Oryza sativa L.).	Brief. Bioinformatics			2017		
44987	29032400	Li J., Pan Y., Guo H., Zhou L., Yang S., Zhang Z., Yang J., Zhang H., Li J., Zeng Y., Li Z.	Fine mapping of QTL qCTB10-2 that confers cold tolerance at the booting stage in rice.	Theor. Appl. Genet.	131(1)	157-166	2018		
44988	28982185	Cui H., Wang C., Qin T., Xu F., Tang Y., Gao Y., Zhao K.	Promoter variants of Xa23 alleles affect bacterial blight resistance and evolutionary pattern.	PLoS ONE	12(10)	e0185925	2017		
44989	29163589	Feng F., Li Y., Qin X., Liao Y., Siddique K.H.M.	Changes in Rice Grain Quality of Indica and Japonica Type Varieties Released in China from 2000 to 2014.	Front Plant Sci	8	1863	2017		
44990	29066364	Li Y., Li H., Li Y.F., Zhao J., Guo J., Wang R., Li B., Zhang Z., Gao Y.	Evidence for molecular antagonistic mechanism between mercury and selenium in rice (Oryza sativa L.): A combined study using 1, 2-dimensional electrophoresis and SR-XRF techniques.	J Trace Elem Med Biol			2017		
44991	29073469	Lin Y., Zhao Z., Zhou S., Liu L., Kong W., Chen H., Long W., Feng Z., Jiang L., Wan J.	top bending panicle1 is involved in brassinosteroid signaling and regulates the plant architecture in rice.	Plant Physiol. Biochem.	121	1-13	2017		
44992	29081785	Tan G.Z.H., Das Bhowmik SS., Hoang T.M.L., Karbaschi M.R., Johnson A.A.T., Williams B., Mundree S.G.	Finger on the Pulse: Pumping Iron into Chickpea.	Front Plant Sci	8	1755	2017		
44993	29048564	Banakar R., Alvarez Fern?ndez ?., D?az-Benito P., Abad?a J., Capell T., Christou P.	Phytosiderophores determine thresholds for iron and zinc accumulation in biofortified rice endosperm while inhibiting the accumulation of cadmium.	J. Exp. Bot.	68(17)	4983-4995	2017		
44994	28987861	Hwang S.G., Chapagain S., Lee J.W., Han A.R., Jang C.S.	Genome-wide transcriptome profiling of genes associated with arsenate toxicity in an arsenic-tolerant rice mutant.	Plant Physiol. Biochem.	120	40-51	2017		
44995	29223342	Qi Z., Yu J., Shen L., Yu Z., Yu M., Du Y., Zhang R., Song T., Yin X., Zhou Y., Li H., Wei Q., Liu Y.	Enhanced resistance to rice blast and sheath blight in rice (oryza sativa L.) by expressing the Oxalate decarboxylase protein Bacisubin from Bacillus subtilis.	Plant Sci.	265	51-60	2017		
45001	29123646	Mondal T.K., Rawal H.C., Gaikwad K., Sharma T.R., Singh N.K.	First de novo draft genome sequence of Oryza coarctata, the only halophytic species in the genus Oryza.	F1000Res	6	1750	2017		
45002	28953215	Zhong M., Li S., Huang F., Qiu J., Zhang J., Sheng Z., Tang S., Wei X., Hu P.	The Phosphoproteomic Response of Rice Seedlings to Cadmium Stress.	Int J Mol Sci	18(10)		2017		
45008	28979289	Krishnan A., Gupta C., Ambavaram M.M.R., Pereira A.	RECoN: Rice Environment Coexpression Network for Systems Level Analysis of Abiotic-Stress Response.	Front Plant Sci	8	1640	2017		
45009	28912524	Begemann M.B., Gray B.N., January E., Gordon G.C., He Y., Liu H., Wu X., Brutnell T.P., Mockler T.C., Oufattole M.	Precise insertion and guided editing of higher plant genomes using Cpf1 CRISPR nucleases.	Sci Rep	7(1)	11606	2017		
45010	28973974	Nepal M.P., Andersen E.J., Neupane S., Benson B.V.	Comparative Genomics of Non-TNL Disease Resistance Genes from Six Plant Species.	Genes (Basel)	8(10)		2017		
45012	28927835	Xiao W., Jiang L., Wang W., Wang R., Fan J.	Evaluation of rice tetraticopeptide domain-containing thioredoxin as a novel solubility-enhancing fusion tag in Escherichia coli.	J. Biosci. Bioeng.	125(2)	160-167	2018		
45013	29158631	Zhu S., Huang R., Wai H.P., Xiong H., Shen X., He H., Yan S.	Mapping quantitative trait loci for heat tolerance at the booting stage using chromosomal segment substitution lines in rice.	Physiol Mol Biol Plants	23(4)	817-825	2017		
45014	28885178	Zhou X., Bai X., Xing Y.	A Rice Genetic Improvement Boom by Next Generation Sequencing.	Curr Issues Mol Biol	27	109-126	2018		
45015	29025389	Pan X., Fang Y., Yang X., Zheng D., Chen L., Wang L., Xiao J., Wang X.E., Wang K., Cheng Z., Yu H., Zhang W.	Chromatin states responsible for the regulation of differentially expressed genes under 60Co~gamma ray radiation in rice.	BMC Genomics	18(1)	778	2017		
45016	29016662	Dong L., Liu S., Xu P., Deng W., Li X., Tharreau D., Li J., Zhou J., Wang Q., Tao D., Yang Q.	Fine mapping of Pi57(t) conferring broad spectrum resistance against Magnaporthe oryzae in introgression line IL-E1454 derived from Oryza longistaminata.	PLoS ONE	12(10)	e0186201	2017	PI57	Pi57, Pi57(t)
45017	29241565	Li X., He Y., Yang J., Jia Y.H., Zeng H.L.	Gene mapping and transcriptome profiling of a practical photo-thermo-sensitive rice male sterile line with seedling-specific green-revertible albino leaf.	Plant Sci.	266	37-45	2018		
45018	29085253	Nagaoka I., Sasahara H., Matsushita K., Maeda H., Fukuoka S., Yamaguchi M., Shigemune A., Miura K.	Quantitative trait loci analysis of grain appearance in Oryza sativa L. 'Emi-no-kizuna'.	Breed. Sci.	67(4)	421-426	2017		
45019	28893659	Sarkar A., Ghosh P.K., Pramanik K., Mitra S., Soren T., Pandey S., Mondal M.H., Maiti T.K.	A halotolerant Enterobacter sp. displaying ACC deaminase activity promotes rice seedling growth under salt stress.	Res. Microbiol.	169(1)	20-32	2018		
45020	28879498	Liang Y., Zheng J., Yan C., Li X., Liu S., Zhou J., Qin X., Nan W., Yang Y., Zhang H.	Locating QTLs controlling overwintering trait in Chinese perennial Dongxiang wild rice.	Mol. Genet. Genomics	293(1)	81-93	2018		
45021	28956755	Reynoso M.A., Pauluzzi G.C., Kajala K., Cabanlit S., Velasco J., Bazin J., Deal R., Sinha N.R., Brady S.M., Bailey-Serres J.	Nuclear Transcriptomes at High Resolution Using Retooled INTACT.	Plant Physiol.	176(1)	270-281	2018		
45022	28916800	Wei H., Lou Q., Xu K., Yan M., Xia H., Ma X., Yu X., Luo L.	Alternative splicing complexity contributes to genetic improvement of drought resistance in the rice maintainer HuHan2B.	Sci Rep	7(1)	11686	2017		
45023	28883457	Zhu M., Liu D., Liu W., Li D., Liao Y., Li J., Fu C., Fu F., Huang H., Zeng X., Ma X., Wang F.	QTL mapping using an ultra-high-density SNP map reveals a major locus for grain yield in an elite rice restorer R998.	Sci Rep	7(1)	10914	2017		
45024	28871108	Lv Q., Huang Z., Xu X., Tang L., Liu H., Wang C., Zhou Z., Xin Y., Xing J., Peng Z., Li X., Zheng T., Zhu L.	Allelic variation of the rice blast resistance gene Pid3 in cultivated rice worldwide.	Sci Rep	7(1)	10362	2017		
45025	28905991	De Vleesschauwer D., Filipe O., Hoffman G., Seifi H.S., Haeck A., Canlas P., Van Bockhaven J., De Waele E., Demeestere K., Ronald P., Hofte M.	Target of rapamycin signaling orchestrates growth-defense trade-offs in plants.	New Phytol.	217(1)	305-319	2018		
45026	28893199	Ganie S.A., Debnath A.B., Gumi A.M., Mondal T.K.	Comprehensive survey and evolutionary analysis of genome-wide miRNA genes from ten diploid Oryza species.	BMC Genomics	18(1)	711	2017		
45027	28867871	Singh K., McClean C.J., B?ker P., Hartley S.E., Hill J.K.	Mapping regional risks from climate change for rainfed rice cultivation in India.	Agric Syst	156	76-84	2017		
45028	29077764	Ishikawa R., Iwata M., Taniko K., Monden G., Miyazaki N., Orn C., Tsujimura Y., Yoshida S., Ma J.F., Ishii T.	Detection of quantitative trait loci controlling grain zinc concentration using Australian wild rice, Oryza meridionalis, a potential genetic resource for biofortification of rice.	PLoS ONE	12(10)	e0187224	2017		
45029	28988325	Tang H., Xie Y., Liu Y.G., Chen L.	Advances in understanding the molecular mechanisms of cytoplasmic male sterility and restoration in rice.	Plant Reproduction	30(4)	179-184	2017		
45030	29086189	Chandran A.K.N., Bhatnagar N., Yoo Y.H., Moon S., Park S.A., Hong W.J., Kim B.G., An G., Jung K.H.	Meta-expression analysis of unannotated genes in rice and approaches for network construction to suggest the probable roles.	Plant Mol. Biol.	96(1-2)	17-34	2018		
45031	29056456	Wang P., Khoshravesh R., Karki S., Tapia R., Balahadia C.P., Bandyopadhyay A., Quick W.P., Furbank R., Sage T.L., Langdale J.A.	Re-creation of a Key Step in the Evolutionary Switch from C3 to C4 Leaf Anatomy.	Curr. Biol.	27(21)	3278-3287.e6	2017		
45032	29183614	Niu J., Nie D., Yu D., Wu Q., Yu L., Yao Z., Du X., Li J.	Synthesis, fungicidal activity and phloem mobility of phenazine-1-carboxylic acid-alanine conjugates.	Pestic Biochem Physiol	143	8-13	2017		
45033	29163604	Sandhu N., Subedi S.R., Yadaw R.B., Chaudhary B., Prasai H., Iftekharuddaula K., Thanak T., Thun V., Battan K.R., Ram M., Venkateshwarlu C., Lopena V., Pablico P., Maturan P.C., Cruz M.T.S., Raman K.A., Collard B., Kumar A.	Root Traits Enhancing Rice grain yield under Alternate Wetting and Drying Condition.	Front Plant Sci	8	1879	2017		
45034	29048113	Kouzai Y., Kimura M., Watanabe M., Kusunoki K., Osaka D., Suzuki T., Matsui H., Yamamoto M., Ichinose Y., Toyoda K., Matsuura T., Mori I.C., Hirayama T., Minami E., Nishizawa Y., Inoue K., Onda Y., Mochida K., Noutoshi Y.	Salicylic acid-dependent immunity contributes to resistance against Rhizoctonia solani, a necrotrophic fungal agent of sheath blight, in rice and Brachypodium distachyon.	New Phytol.	217(2)	771-783	2018		
45035	29025391	Liu E., Zeng S., Chen X., Dang X., Liang L., Wang H., Dong Z., Liu Y., Hong D.	Identification of putative markers linked to grain plumpness in rice (Oryza sativa L.) via association mapping.	BMC Genet.	18(1)	89	2017		
45036	29047256	Chae S., Kim J.S., Jun K.M., Lee S.B., Kim M.S., Nahm B.H., Kim Y.K.	Analysis of Genes with Alternatively Spliced Transcripts in the Leaf, Root, Panicle and Seed of Rice Using a Long Oligomer Microarray and RNA-Seq.	Mol. Cells	40(10)	714-730	2017		
45037	29073903	Walitang D.I., Kim K., Madhaiyan M., Kim Y.K., Kang Y., Sa T.	Characterizing endophytic competence and plant growth promotion of bacterial endophytes inhabiting the seed endosphere of Rice.	BMC Microbiol.	17(1)	209	2017		
45038	28967675	Xiao G., Zhou J., Lu X., Huang R., Zhang H.	Excessive UDPG resulting from the mutation of UAP1 causes programmed cell death by triggering reactive oxygen species accumulation and caspase-like activity in rice.	New Phytol.	217(1)	332-343	2018		
45039	29071531	Kaur G., Guruprasad K., Temple B.R.S., Shirvanyants D.G., Dokholyan N.V., Pati P.K.	Structural complexity and functional diversity of plant NADPH oxidases.	Amino Acids	50(1)	79-94	2018		
45040	29308123	Jin X., Chen Y., Liu P., Li C., Cai X., Rong J., Lu B.R.	Introgression from cultivated rice alters genetic structures of wild relative populations: implications for in situ conservation.	AoB Plants	10(1)	plx055	2018		
45041	28976110	Tayi L., Kumar S., Nathawat R., Haque A.S., Maku R.V., Patel H.K., Sankaranarayanan R., Sonti R.V.	A mutation in an exoglucanase of Xanthomonas oryzae pv. oryzae, which confers an endo mode of activity, affects bacterial virulence, but not the induction of immune responses, in rice.	Mol. Plant Pathol.			2017		
45042	29089547	Tang L., Mao B., Li Y., Lv Q., Zhang L., Chen C., He H., Wang W., Zeng X., Shao Y., Pan Y., Hu Y., Peng Y., Fu X., Li H., Xia S., Zhao B.	Knockout of OsNramp5 using the CRISPR/Cas9 system produces low Cd-accumulating indica rice without compromising yield.	Sci Rep	7(1)	14438	2017		
45043	28910491	Han H., Vila-Aiub MM., Jalaludin A., Yu Q., Powles S.B.	A double EPSPS gene mutation endowing glyphosate resistance shows a remarkably high resistance cost.	Plant Cell Environ.	40(12)	3031-3042	2017		
45044	28994318	James B., Zhang W., Sun P., Wu M., Li H.H., Khaliq M.A., Jayasuriya P., James S., Wang G.	Tungsten (W) bioavailability in paddy rice soils and its accumulation in rice (Oryza sativa).	Int J Environ Health Res	27(6)	487-497	2017		
45045	12609740	Tsuji H., Tsutsumi N., Sasaki T., Hirai A., Nakazono M.	Organ-specific expressions and chromosomal locations of two mitochondrial aldehyde dehydrogenase genes from rice (Oryza sativa L.), ALDH2a and ALDH2b.	Gene	305(2)	195-204	2003	ALDH2B,ALDH2A	OsALDH2B,OsALDH2a, ALDH2a, Aldh2a, OsSTA73, OsALDH2B5, ALDH2B5  
45046	12832071	Tsuji H., Meguro N., Suzuki Y., Tsutsumi N., Hirai A., Nakazono M.	Induction of mitochondrial aldehyde dehydrogenase by submergence facilitates oxidation of acetaldehyde during re-aeration in rice.	FEBS Lett.	546(2-3)	369-73	2003	ALDH2A,ALDH2B	OsALDH2a, ALDH2a, Aldh2a, OsSTA73, OsALDH2B5, ALDH2B5  ,OsALDH2B
45047	20634950	Simeon O Kotchoni, Jose C Jimenez-Lopez, Gao D., Edwards V., Emma W Gachomo, Venu M Margam, Manfredo J Seufferheld	Modeling-dependent protein characterization of the rice aldehyde dehydrogenase (ALDH) superfamily reveals distinct functional and structural features.	PLoS ONE	5(7)	e11516	2010	ALDH2A,SK2(T)(SCL, FGR),ALDH7,ALDH3H1      ,_     ,ALDH2B1  ,ALDH2B2,ALDH3E2     ,ALDH22A1,ALDH5F1,ALDH18B2,ALDH12B1      ,ALDH3B1    ,ALDH3H2    ,ALDH3E1,BAD1,P5CS,ALDH6B2     ,ALDH1A,ALDH2C1   ,ALDH11A3	OsALDH2a, ALDH2a, Aldh2a, OsSTA73, OsALDH2B5, ALDH2B5  ,sk2(t)(scl, fgr), fgr, scl, BAD2, BADH2, sk2, OsBADH2, Badh2, badh2, Os2AP, BADH-2, OsALDH10A8, ALDH10A8 ,OsALDH7, osaldh7, LDH, ALDH7B7, OsALDH7B6, ALDH7B6, OsAnt1, Ant1,OsALDH3H1      ,OsALDH12A1, ALDH12A1   ,OsALDH2B1, OsALDH2b, ALDH2b,OsALDH2B2,OsALDH3E2     ,OsALDH22, ALDH22, OsALDH22A1, ,OsALDH5F1, SSADH,P5CS2, OsP5CS2, OsALDH18B2 ,OsALDH12B1   ,OsALDH3B1    ,OsALDH3H2 ,OS-ALDH, OsALDH3E1,Badh1, badh1, BAD1, BADH1, OsBADH1, BADH, OsALDH10A5, ALDH10A5 ,OsP5CS, P5CS1, OsP5CS1, OsALDH18B1, ALDH18B1, OsP5CS-1, P5CS-1,OsALDH6B2  ,ALDH1a, Aldh1a, OsALDH1a, OsALDH2C4, ALDH2C4 ,OsALDH2C1   ,OsALDH11A3, GAPN
45048	27637926	Liang Z., Wang L., Pan Q.	A New Recessive Gene Conferring Resistance Against Rice Blast.	Rice (N Y)	9(1)	47	2016	PI66	Pi66, Pi66(t)
45049	0	WANG Zhong-wei, ZHANG Tian-quan, XING Ya-di ZENG Xiao-qin, WANG Ling, LIU Zhong-xian, SHI Jun-qiong, ZHU Xiao-yan, MA Ling, LI Yun-Feng, LING Ying-Hua, SANG Xian-chun, HE Guang-Hua	YGL9, encoding the putative chloroplast signal recognition particle 43 kDa protein in rice, is involved in chloroplast development	Journal of Integrative Agriculture	15(5)	944-953	2015	NDHA,PETE,_,YGL9,ELL,LHCB1.1,PSAL,YGL1,PSBO,FGL,LHCB2.1,YGL98	ndhA,petE, petG,Lhca6, OsLhca6,OscpSRP43, cpSRP43, PGL3, OsPGL3, Os YGL9,chlI, OsChlI, ChlI, CHLI, OsCHLI, OsCHLI/ELL, OsELL,Lhcb1.1 OsLhcb1.1, lhcB,PsaL, OsPSAL,OsYGL1, CHLG, Ygl1, CS, OsCHLG,PsbO, psbO, OsPSBO,fgl(fl), fl, fgl, OsFGL, OsPorB, PoPA, PORA, porA, OsPORA, PORB, OsPORB,LHCB, LHCP II, Lhcb2, OsLhcb2, Lhcb2.1, OsLhcb2.1 ,OsChlD, ChlD, CHLD, OsCHLD, Ygl7, YGL3, OsvWA12, vWA12
45050	0	YANG Hai-lian, LIU Min, GUO Min, LI Rong-de, ZHANG Hong-gen, YAN Chang-jie	Genetic Analysis and Position Cloning of a yellow Ggren leaf 10 (ygl10) Gene, Responsible for Leaf Color in Rice	hin J Rice Sci	28(1)	41-48	2014	YGL10	CAO, OsCAO, CAO1, OsCAO1, Oslls1, Lls1, DVR, PGL
45051	0	WANG Ya-qin, SHI Jun-qiong, ZHANG Ting, LI Yan, ZHANG Tian-quan, ZHANG Xiao-long, SANG Xian-chun, LING Ying-Hua, HE Guang-Hua	Characterization and Candidate Gene Analysis of yellow-green leaf Mutant YGL13 in Rice (Oryza sativa)	Scientia Agricultura Sinica	48(21)	4197-4208	2015	YGL13	OsSIG1, SIG1, Os-SigA, OsSigA, Os Sig1, SIGA
45052	0	Shi J., Wang Y., Guo S., Ma L., Wang Z., Zhu X., XianChun Sang, Ling Y., Wang N., Zhao F., He G.	Molecular Mapping and Candidate Gene Analysis of a yellow-green leaf 6 (YGL6) Mutant in Rice	Crop Sci.	55	669-680	2015	YGL6 	CSP41b, LGL1
45053	0	Tian X., Ling Y., Fang L., Du P., Sang X., Zhao F., Li Y., Xie R., He G.	Gene cloning and functional analysis of yellow green leaf3 (ygl3) gene during the whole-plant growth stage in rice	Genes Genomics	35(1)	87-93	2013	YGL98	OsChlD, ChlD, CHLD, OsCHLD, Ygl7, YGL3, OsvWA12, vWA12
45054	0	Xu X., Kayashi N., chun-Tai Wang, Fukuoka S., Kawasaki S., Takatsuji H., Chang-Jie Jiang	Rice blast resistance gene Pikahei-1(t), a member of a resistance gene cluster on chromosome 4, encodes a nucleotide-binding site and leucine-rich repeat protein	Molecular Breeding	34(2)	691-700	2014	PI63	Pi63, Pikahei-1(t), RGA3, RGA1-NB
45055	0	Lei C., Hao K., Yang Y., Ma J., Wang S., Wang J., Cheng Z., Zhao S., Zhang X., Guo X., Wang C., Wan J.	Identification and fine mapping of two blast resistance genes in rice cultivar 93-11	The Crop Journal	1(1)	2-14	2013	PI60,PI61	Pi60(t),Pi61(t)
45056	29140092	Wetterhorn K.M., Gabardi K., Michlmayr H., Malachova A., Busman M., McCormick S.P., Berthiller F., Adam G., Rayment I.	Determinants and Expansion of Specificity in a Trichothecene UDP-Glucosyltransferase from Oryza sativa.	Biochemistry	56(50)	6585-6596	2017		
45057	29093216	Hu L., Wu Y., Wu D., Rao W., Guo J., Ma Y., Wang Z., Shangguan X., Wang H., Xu C., Huang J., Shi S., Chen R., Du B., Zhu L., He G.	The Coiled-Coil and Nucleotide Binding Domains of BROWN PLANTHOPPER RESISTANCE14 Function in Signaling and Resistance against Planthopper in Rice.	Plant Cell	29(12)	3157-3185	2017	AOS2,_,PR10A,RLCK281,WRKY72,ICS1,WRKY46,GNS5,PAL1,PR4,PR1B,PR5,EDS1,_,GNS9,BPH14,NH1	OsAOS2, CYP74A2, OsAOS, OsAOS1,Lox2:Os:1, OsLOX9, LOX9, OsLOX8, LOX8, OsLOX2, LOX2, OsRLL, OsHI-LOX, HI-LOX, RLL2 LOX, RLL2, Lox2osPil, OsLOX2;1, LOX2;1, OsLOX1, OsLOX7, LOX7,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsPUB56, PUB56, OsRLCK281, OsUSP34, USP34,  OsPUB56, PUB56,OsWRKY72, WRKY-72,OsICS1, OsICS, ICS,OsWRKY46, WRKY91, OsWRKY91,Gns5, OsGns5,OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6,OsPR4, OsPR4a, PR4a, OsPR-4,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1, OsPR1a, PR1a,OsPR5, Pir2, PR-5, PR5-1,OsEDS1,,Gns9, OsGns9, OsPR8a, PR8a, OsBGL12, BGL12, BG12, OsBG12,Bph14 (Qbp1), Bph14, Qbp1, qBPH-3,OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2, DLN5, OsDLN5,  OsBTBA1, BTBA1
45058	29158333	Chen Z.S., Liu X.F., Wang D.H., Chen R., Zhang X.L., Xu Z.H., Bai S.N.	Transcription Factor OsTGA10 Is a Target of the MADS Protein OsMADS8 and Is Required for Tapetum Development.	Plant Physiol.	176(1)	819-835	2018	BHLH142,CP1,MADS24,TDR,MTR1,BZIP74,MADS7,RADC1	OsbHLH142, bHLH142, TIP2, OsTIP2, TIP2/TDR/bHLH142,OsCP1, Os CP1,OsMADS24, MADS8, OsMADS8, OsMADS8/24 ,tdr, OsbHLH005, bHLH005, OsbHLH5, bhlh5, TDR1, OsTDR, OsTDR1, OsMYC5, MYC5,OsMTR1,OsbZIP74, OsTGA10, TGA10 ,OsMADS7, OsMADS45, FDRMADS1, RMADS216, AGL6, M79, MADS45, Os MADS7, Os MADS45, OsMADS7/45,OsAP25, Radc1, OsRADC1, AP25
45059	28969789	Hu S., Yu Y., Chen Q., Mu G., Shen Z., Zheng L.	OsMYB45 plays an important role in rice resistance to cadmium stress.	Plant Sci.	264	1-8	2017	CATA,NOE1,MYB45	CATA1, Cat A1*, OSCAT-A, Cat2, CatA1, CAT-A, OsCatA, OsCAT, CAT, catA, OSCATA, OsCATc, OsCATA, OsCAT1A, CAT1, OsCAT1, OsCATC, OsCAT2,CATC, OsCat, OsCatC, OsCATC, OsNOE1, noe1, catC, OsCATC, CAT3, OsCAT3, LLM9428, OsLLM9428,OsMPH1, MPH1, OsMYB45, DLN171, OsDLN171, OsMYB-R1, MYB-R1, CRPG17, OsCRPG17
45060	29031031	Lin H., Yu J., Pearce S.P., Zhang D., Wilson Z.A.	RiceAntherNet: a gene co-expression network for identifying anther and pollen development genes.	Plant J.	92(6)	1076-1091	2017	TDR,PTC1,MSP1,BHLH142,EAT1,MIL2,RAG,GAMYB,UDT1	tdr, OsbHLH005, bHLH005, OsbHLH5, bhlh5, TDR1, OsTDR, OsTDR1, OsMYC5, MYC5,OsMS1, tms9-1, OsPTC1, MS1, TMS9-1, OsTMS9-1,Msp1, OsMSP1, OsTMS15, TMS15,OsbHLH142, bHLH142, TIP2, OsTIP2, TIP2/TDR/bHLH142,OsEAT1, OsbHLH141, EAT1/DTD1, bHLH141, DTD1, DTD, DLN120, OsDLN120,OsTDL1A, TDL1A, OsMIL2, OsTDL1A/MIL2, OsTDL1a ,MADS3, OsMADS3, OsMADS3(t), RMADS222, RAG1, rf3,OsGAMYB, GAM1, OsGAMyb, Os-MYBGA, Os GAMYB, OsMYBGA, MYBGA, Os2R_MYB15, 2R_MYB15 ,Udt1, bHLH164, OsUDT1, OsbHLH164 
45061	29024118	Srivastava A.K., Zhang C., Caine R.S., Gray J., Sadanandom A.	Rice SUMO protease Overly Tolerant to Salt 1 targets the transcription factor, OsbZIP23 to promote drought tolerance in rice.	Plant J.	92(6)	1031-1043	2017	BZIP23,LEA9,LEA3-1,BHLH148,OTS1,DHN6	OsbZIP23, OsAREB1, OsABF2, Osbzip23, OsAREB2, OsZIP23, ZIP23,OsLEA9, OsLEA5, LEA5,OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3, OsLEA3A, LEA3A,OsbHLH148, bHLH148,OsOTS1,OsLEA25, LEA25, OsEnS-143, OsRAB21, RAB21, Rab17, OsRab17
45062	29103092	Saifi S.K., Passricha N., Tuteja R., Tuteja N.	Stress-induced Oryza sativa RuvBL1a is DNA-independent ATPase and unwinds DNA duplex in 3' to 5' direction.	Protoplasma	255(2)	669-684	2018	_,_,_	OsRuvBL1b, RuvBL1b, RUVBL1B,OsRuvBL2a, RuvBL2a, RUVBL2A,OsRuvBL1a, RuvBL1a, RUVBL1A
45063	29180380	Tang Y., Liu H., Guo S., Wang B., Li Z., Chong K., Xu Y.	OsmiR396d Affects Gibberellin and Brassinosteroid Signaling to Regulate Plant Architecture in Rice.	Plant Physiol.	176(1)	946-959	2018	D61,KO4,BZR1,GRF6, LIC,DLT,GA20OX3,D18,GNP1,CPS1,GID2,MIR396D	d61*, dwf42, d61, OsBRI1, OSBRI1, BRI1, Os BRI1, Osbri1, OsBRKq1, BRKq1,OsKO4, OsKOL4, KOS1, CYP701A8, OsCYP701A8, OsKO2, CYP701A8/OsKOL4,OsBZR1, Os BZR1, OsBES1-6, BES1-6,OsGRF6,OsC3H46, C3H46, OsLIC, OsFLA6, FLA6,dlt, OsGRAS32, OsDLT, OsDLT1, DTL1, OsGRAS-32, OsGRAS32, GRAS-32, GRAS32, SMOS2/DLT, SMOS2, OsSMOS2, OsGS6, GS6,OsGA20ox3, ga20ox3,d18-h  (d18-I, d18h), dwf15, d25, d18, d18-k, d18-AD, d18-dy, OsGA3ox2, ga3ox2, OsGA3OX2, GA3OX2, OsGA3ox-2, GA3ox-2, GA3ox1,GA20OX1, OsGA20ox1, 20ox1, GA20ox-1, ga20ox1, Os20ox, C20OX2, OsGA20ox2, OsGA20ox-1, GA20ox1, OsGNP1,OsCPS1, OsCPS1ent, OsCPS, Os CPS1, OsTPS4, TPS4, TPS29, OsTPS29, OsCPS1-L, OsCPS1-S,gid2, GF14e, OsGF14e, OsGID2, 14-3-3e,miR396d, osa-miR396d, osa-MIR396d, OsmiR396d
45064	29101278	Liu J., Zhou M., Delhaize E., Ryan P.R.	Altered Expression of a Malate-Permeable Anion Channel, OsALMT4, Disrupts Mineral Nutrition.	Plant Physiol.	175(4)	1745-1759	2017	PAAB1-1,ALMT2,ALMT6,ALMT3,ALMT8,ALMT9,ALMT4,ALMT5,ALMT1 	OsALMT7, ALMT7,OsALMT2,OsALMT6,OsALMT3,OsALMT8,OsALMT9, OsALMT2,OsALMT4,OsALMT5,OsALMT1 
45065	29127328	Farthing E.C., Menguer P.K., Fett J.P., Williams L.E.	OsMTP11 is localised at the Golgi and contributes to Mn tolerance.	Sci Rep	7(1)	15258	2017	MTP11.1,MTP11	OsMTP11.1,OsMTP11, OsMTP5, MTP5
45066	29162892	Hu Y., Wu Q., Peng Z., Sprague S.A., Wang W., Park J., Akhunov E., Jagadish K.S.V., Nakata P.A., Cheng N., Hirschi K.D., White F.F., Park S.	Silencing of OsGRXS17 in rice improves drought stress tolerance by modulating ROS accumulation and stomatal closure.	Sci Rep	7(1)	15950	2017	GRX22,LEA3-1,RAB16C	OsGRX22, OsGRXS17, GRXS17,OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3, OsLEA3A, LEA3A,rab21, OsLEA27, rab16C, OsRAB16C, DHD
45067	29131851	Gao M., Yin X., Yang W., Lam S.M., Tong X., Liu J., Wang X., Li Q., Shui G., He Z.	GDSL lipases modulate immunity through lipid homeostasis in rice.	PLoS Pathog.	13(11)	e1006724	2017	PR10A,GELP78,PR5,GLIP1,PR1A,PR1B	PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsGELP78, OsEnS-82, EnS-82, OsGLIP2, GLIP2,OsPR5, Pir2, PR-5, PR5-1,OsGLIP1,OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1, OsPR1b, PR1alpha, OsPR1alpha,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1, OsPR1a, PR1a
45068	28970232	Liu Y., Li J., Wei G., Sun Y., Lu Y., Lan H., Li C., Zhang S., Cao M.	Cloning, molecular evolution and functional characterization of ZmbHLH16, the maize ortholog of OsTIP2 (OsbHLH142).	Biol Open	6(11)	1654-1663	2017		
45069	29127261	Schuler M.L., Sedelnikova O.V., Walker B.J., Westhoff P., Langdale J.A.	SHORTROOT-Mediated Increase in Stomatal Density Has No Impact on Photosynthetic Efficiency.	Plant Physiol.	176(1)	757-772	2018	SHR2,SHR1	OsSHR2, OsGRAS-15, OsGRAS15, GRAS-15, GRAS15,OsSHR1, OsGRAS-38, OsGRAS38, GRAS-38, GRAS38, DLN189, OsDLN189, OsSHR, SHR
45070	29362094	Zhong J., Peng Z., Peng Q., Cai Q., Peng W., Chen M., Yao J.	Regulation of plant height in rice by the Polycomb group genes OsEMF2b, OsFIE2 and OsCLF.	Plant Sci.	267	157-167	2018		
45071	29163628	Huang R., Hui S., Zhang M., Li P., Xiao J., Li X., Yuan M., Wang S.	A Conserved Basal Transcription Factor Is Required for the Function of Diverse TAL Effectors in Multiple Plant Hosts.	Front Plant Sci	8	1919	2017	XA13,TFX1,TFIIAGAMMA1,XA5,SULTR3;6	xa13, Xa13, Os8N3, Os-8N3, 8N3, OsSWEET11, SWEET11, OsSWEET11/Xa13, Xa13/Os8N3/SWEET11, Os8N3/Xa13, OsSWEET11/Os8N3, OsSWEET11a, SWEET11a,OsbZIP73, bZIP73, OsTFX1,OsTFIIAgamma1, OsTFIIAc-1, TFIIAc-1, TFIIAgamma-1,xa5, xa-5, Xa5, TFIIAy, OsTFIIAgamma5, TFIIAgamma5, OsTFIIAgamma5/Xa5,OsSultr3;6, OsSul3;6, OsSULTR3;6 
45072	29044557	Shankar A., Fernandes J.L., Kaur K., Sharma M., Kundu S., Pandey G.K.	Rice phytoglobins regulate responses under low mineral nutrients and abiotic stresses in Arabidopsis thaliana.	Plant Cell Environ.	41(1)	215-230	2018	Hb3,Hb1,Hb2,Hb5,Hb4	HB3, OsNSHB3, NSHB3, OsPgb1.3, Pgb1.3,HB1, OsHB1, GLB1A, rHb1, ORYsa GLB1a, nsHb1, OsNSHB1, hb1, nsHb, OsPgb1.1, Pgb1.1,HB2, OsHB2, OsNSHB2, hb2, GLB1b, ORYsa GLB1b, OsPgb1.2, Pgb1.2,OsHB5, HB5, OsPgb1.5, Pgb1.5,OsHB4, HB4, OsNSHB4, NSHB4, OsPgb1.4, Pgb1.4
45073	29143298	Huang R., Wang Y., Wang P., Li C., Xiao F., Chen N., Li N., Li C., Sun C., Li L., Chen R., Xu Z., Zhu J., Deng X.	A single nucleotide mutation of IspF gene involved in the MEP pathway for isoprenoid biosynthesis causes yellow-green leaf phenotype in rice.	Plant Mol. Biol.	96(1-2)	5-16	2018	DXR,PSAA,GRY340,DXS1,PSBA,MCS,LAS1,HDS,YGL1,PSAN,CMS	OsDXR, OsIspC, IspC,PsaA, psaA, PsAA1, psaA1,OsCMK, CMK, OsIspE, IspE, OsGRY340, AL4, OsAL4,CLA1, OsDXS1, dxs1, OsDXS, DXS, OsTKL1, TKL1,PsbA, psbA, OsPsbA, PSBD1, OsPSBD1, psbD1,OsMCS, IspF, OsIspF, OsMDS, MDS,HDR, OsHDR, OsIspH, IspH, OsHDR1, HDR1, OsLAS1, LAS1/OsHMBPP, OsHMBPP, HMBPP, OsIspH1, IspH1, YGL3, OsYGL3,OsHDS, OsIspG, IspG,OsYGL1, CHLG, Ygl1, CS, OsCHLG,psaN, OspsaN, PN, OsPN,OsCMS, OsIspD, IspD, OsMCT, MCT
45074	29149369	Ramamoorthy R., Vishal B., Ramachandran S., Kumar P.P.	The OsPS1-F gene regulates growth and development in rice by modulating photosynthetic electron transport rate.	Plant Cell Rep.	37(2)	377-385	2018	PSAF	Usaf, OsPS1-F, PS1-F, OsPS1, PS1
45075	29154991	Wu W., Zhang Y., Zhang M., Zhan X., Shen X., Yu P., Chen D., Liu Q., Sinumporn S., Hussain K., Cheng S., Cao L.	The RICE CONSTANS-like protein OsCOL15 suppresses flowering by promoting Ghd7 and repressing RID1.	Biochem. Biophys. Res. Commun.	495(1)	1349-1355	2018	HD3A,RAP1B,COL15,EHD2/RID1,EF1,RAP1A,GHD7,RFT1	Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,MADS14, OsMADS14, FDRMADS6, RMADS211, AGL10,OsBBX26, BBX26, OsO, OsCCT30, CCT30, OsCOL15, OsCOL15/OsBBX26, Hd1-3,Ehd2, RID1, OsID1, ID1, OsId1, OsID, Ehd2/RID1/OsId1, RID1/OsID1/Ehd2,Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,OsMADS15, FDRMADS3, RMADS215, MADS15, DEP,Ghd2, Ghd7, OsGhd7, OsCCT26, OsCMF8, OsI, Ghd7/Hd4, Hd4, EH7-1/Hd4, Ghd7-0a, EH7-1, EH7/Ghd7, EH7, OsEH7, GLW7.1, OsGLW7.1,FT-L 3, OsFTL3, FTL3, FT-L3, RFT, OsRFT1
45076	29181013	Gupta P., Nutan K.K., Singla-Pareek SL., Pareek A.	Abiotic Stresses Cause Differential Regulation of Alternative Splice Forms of GATA Transcription Factor in Rice.	Front Plant Sci	8	1944	2017	CGA1,GATA4,GATA23,GATA19,GATA2,GATA6,GATA24,GATA13,_,GATA25,GATA9,_,GATA18 ,_,GATA10,NL1,GATA22,GATA1 ,GATA26,GATA16,GATA5,GATA12,GATA20,GATA27,GATA8,GATA7,GATA28,GATA17	Cga1, OsCga1, OsCGA1, OsGATA11, GATA11,OsGATA4,OsGATA23, OsGATA23a, OsGATA23b,OsTIFY1b, TIFY1B, OsCCT15, CCT15, OsGATA19, OsGATA19a, OsGATA19b,OsGATA2, OsGATA2a, OsGATA2b,OsGATA6, OsGATA1, GATA1,OsGATA24,OsGATA13,OsGATA21, GATA21, OsGATA21a, OsGATA21b, DLN117, OSDLN117,OsGATA25,OsGATA9,OsGATA3, GATA3,OsTIFY1A, TIFY1A, OsCCT13, OsGATA18, OsGATA18a, OsGATA18b,OsGATA8, GATA8, OsGATA14, GATA14,OsGATA10,nl1, OsGATA15, GATA15, OsNL1,OsGATA22,OsGATA1, OsGATA6, GATA6,OsGATA26,OsGATA16, OsGNC, GNC,OsGATA5,OsGATA12,OsTIFY2b, TIFY2B, OsCCT24, CCT24, OsGATA20,OsGATA27,OsGATA8, OsGATA14, GATA14, OsGATA8a, OsGATA8b, DLN10, OsDLN10,OsGATA7,OsGATA28,OsTIFY2a, TIFY2a, OsCCT04, OsCCT4, CCT04, CCT4, OsGATA17, OsGATA17a, OsGATA17b
45077	29045742	Lv Y., Shao G., Qiu J., Jiao G., Sheng Z., Xie L., Wu Y., Tang S., Wei X., Hu P.	White Leaf and Panicle 2, encoding a PEP-associated protein, is required for chloroplast biogenesis under heat stress in rice.	J. Exp. Bot.	68(18)	5147-5160	2017	WP2,HSA1,WLP2	TRXZ, OsPAP10, PAP10, OsPAP10/OsTRXz, OsTRXz, TRXz, OsTrx25, Trx25,OsHSA1, OsFLN2, FLN2, HSA1/OsFLN2,OsWLP2, OsFLN1, FLN1, HSA2
45078	29128357	Mao X., Zheng Y., Xiao K., Wei Y., Zhu Y., Cai Q., Chen L., Xie H., Zhang J.	OsPRX2 contributes to stomatal closure and improves potassium deficiency tolerance in rice.	Biochem. Biophys. Res. Commun.	495(1)	461-467	2018	_	BAS1, OsTPX, Os2-Cys PrxA, 2-Cys PrxA, Os2-CysPrxA, 2-CysPrxA, 2CYSPRXA, OsPRX2, PRX2
45079	29194635	Desaki Y., Kouzai Y., Ninomiya Y., Iwase R., Shimizu Y., Seko K., Molinaro A., Minami E., Shibuya N., Kaku H., Nishizawa Y.	OsCERK1 plays a crucial role in the lipopolysaccharide-induced immune response of rice.	New Phytol.	217(3)	1042-1049	2018		
45080	29036625	Jia H., Zhang S., Wang L., Yang Y., Zhang H., Cui H., Shao H., Xu G.	OsPht1;8, a phosphate transporter, is involved in auxin and phosphate starvation response in rice.	J. Exp. Bot.	68(18)	5057-5068	2017		
45081	29237723	Wang Z., Tian X., Zhao Q., Liu Z., Li X., Ren Y., Tang J., Fang J., Xu Q., Bu Q.	The E3 Ligase DROUGHT HYPERSENSITIVE Negatively Regulates Cuticular Wax Biosynthesis by Promoting the Degradation of Transcription Factor ROC4 in Rice.	Plant Cell	30(1)	228-244	2018	ROC4,DHS,BDG	Roc4(t), Roc4, GL2-4, OsROC4, OsGL2-4, OsHDZ16, OsHDZIP16, HDZ16, HDZIP16,,  OsRING46, RING46,Os-BDG, OsBDG
45082	29229750	Maher K.A., Bajic M., Kajala K., Reynoso M., Pauluzzi G., West D.A., Zumstein K., Woodhouse M., Bubb K., Dorrity M.W., Queitsch C., Bailey-Serres J., Sinha N., Brady S.M., Deal R.B.	Profiling of Accessible Chromatin Regions across Multiple Plant Species and Cell Types Reveals Common Gene Regulatory Principles and New Control Modules.	Plant Cell	30(1)	15-36	2018		
45083	29193996	Zheng X.M., Gong T., Ou H.L., Xue D., Qiao W., Wang J., Liu S., Yang Q., Olsen K.M.	Genome-wide association study of rice grain width variation.	Genome	61(4)	233-240	2018		
45084	29223357	Zhang L., Kong H., Ma H., Yang J.	Phylogenomic detection and functional prediction of genes potentially important for plant meiosis.	Gene	643	83-97	2018		
45085	29268034	Wang Q.Z., Downie S.R., Chen Z.X.	Genome-wide searches and molecular analyses highlight the unique evolutionary path of Flavone synthase I (FNSI) in Apiaceae.	Genome	61(2)	103-109	2018		
45086	29234462	Huang J., Li Y., Wang Y., Chen Y., Liu M., Wang Y., Zhang R., Zhou S., Li J., Tu Y., Hao B., Peng L., Xia T.	A precise and consistent assay for major wall polymer features that distinctively determine biomass saccharification in transgenic rice by near-infrared spectroscopy.	Biotechnol Biofuels	10	294	2017	CEL9D,GH9C1,GH9B3,GH9B16,GH9B6,CEL9A,GH10-3,GH10-4,GH10-7,GH10-6,GH10-5,GH9B1	OsCel9D, Cel9D, OsGLU1, OsGH9A1, GH9A1,OsGH9C1, RHC, OsRHC,OsGH9B3,OsGH9B16,OsGH9B6,OsCel9A, OsGH9C3, GH9C3, OsGLU5, Cel9A ,OsGH10-3,OsGH10-4,OsGH10-7,OsGH10-6,OsGH10-5,OsGH9B1
45087	29312378	Fu J., Wu H., Ma S., Xiang D., Liu R., Xiong L.	OsJAZ1 Attenuates Drought Resistance by Regulating JA and ABA Signaling in Rice.	Front Plant Sci	8	2108	2017	LEA3-1,EG2,DREB1A,BHLH148,RAB16A,NCED3,BHLH6,CCD1,DREB1B,ONAC2	OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3, OsLEA3A, LEA3A,OsTIFY3, OsJAZ10, OsJAZ 1, OsJAZ1, JAZ1, EG2/OsJAZ1, EG2, JAZ1/EG2,OsDREB1A, Os DREB1A, CBF3, OsCBF3, OsDREB1A/OsCBF3, ERF24, OsERF24, OsERF024, OsERF#024, AP2/EREBP#114, AP2/EREBP114, OsDREBL,OsbHLH148, bHLH148,Rab16A, rab21, RAB21, OsRab21, OsRAB21, OsRAB-21, OsRab16A, OsLEA29, rab16A, OsRAB16A,OSNCED3, OsNCED-3, OsNCED3, OsNCED3a, NCED3a, OsNCED4, NCED4, OsNECD2, OsNCED2b, NCED2b ,OsbHLH006, bHLH006, OsbHLH6, bHLH6, RERJ1, OsRERJ1, bHLH35,OsCCD1,OsDREB1B, ERF31, OsERF031, OsERF#031, OsERF31, AP2/EREBP#169, AP2/EREBP169, OsDREB1b, OsDREB1C, OsCBF1, CBF1,SNAC1, snac1, OsNAC9, ONAC002, ONAC2, ONAC033, ONAC33, ONAC043, ONAC43, ONAC044, ONAC44, OsNAC19, NAC19, SNAC1/ONAC002, OsSNAC1, OsNAC9, OsNAC1
45088	29260397	Park Y.C., Chapagain S., Jang C.S.	The microtubule-associated RING finger protein 1 (OsMAR1) acts as a negative regulator for salt-stress response through the regulation of OCPI2 (O. sativa chymotrypsin protease inhibitor 2).	Planta	247(4)	875-886	2018	_,OCPI2	OsRFP, OsMAR1, MAR1,  OsRING230, RING230,OsSRO1a, SRO1a, CPI2, OsCPI2, OCPI1
45089	29131712	Thitisaksakul M., Dong S., Beckles D.M.	How rice Glycogen Synthase Kinase-like 5 (OsGSK5) integrates salinity stress response to source-sink adaptation: A proposed model.	Plant Signal Behav	12(12)	e1403708	2017	TGW3	GL3.3, OsSK41, SK41, OsGSK5, GSK5, qTGW3, OsTGW3, OsGSK5/OsSK41, OsSK41/OsGSK5, GL3.3/TGW3
45090	29270910	Sukawa Y., Okamoto T.	Cell cycle in egg cell and its progression during zygotic development in rice.	Plant Reproduction	31(1)	107-116	2018	WEE1,CDKB;1,CDC2-2,KRP2,CDC2-1	Ores;Wee1, OsWEE1,CDKB;1, Orysa;CDKB;1, CDKB1;1, Orysa;CDKB1;1, OsCDKB1.1, CDKB1.1, OsCDKB1;1,cdc2Os-2, CDC2Os-2, CDKA-2, CDKA;2, Orysa;CDKA;2, Rcdc2-2, OsCDKA;2, OsCDKA2, CDKA2, CDKA;1, OsCDKA;1, CDC20S-2, OsCDC20S-2,OsKRP2, OsiICK2, Orysa;KRP2, OrysaICK2, Orysa;ICK2,cdc2Os-1, CDC2Os-1, CDKA-1, CDKA;1, Orysa;CDKA;1, OsCDKA;1, cdc2Os1, Rcdc2-1, OsCDKA1, CDKA1, CDC20S-1, OsCDC20S-1 
45091	29259615	An B., Lan J., Deng X., Chen S., Ouyang C., Shi H., Yang J., Li Y.	Silencing of D-lactate dehydrogenase Impedes Glyoxalase System and Leads to Methylglyoxal Accumulation and Growth Inhibition in Rice.	Front Plant Sci	8	2071	2017	D-LDH 	OsD-LDH, OsD-LDH1, D-LDH1
45092	29282559	Yang J., Wang L., Mao C., Lin H.	Characterization of the rice NLA family reveals a key role for OsNLA1 in phosphate homeostasis.	Rice (N Y)	10(1)	52	2017	PT10,PT4,PT6,PT2,NLA1,RFPHC-1,PT1,PT8	OsPT10, PHT1-10, OsPht1;10,OsPT4, PHT1-4, OsPht1;4, PHT1-2, PHT1;4, OsPHT1;4,OsPT6, PHT1-6, OsPht1;6, OsLPT6:1, OsLPT1, OsPT6:1, Pht1;6, LPT6:1, LPT1, PT6:1,OsPT2, PTH1-2, OsPht1;2, PHT1;2, OsPHT1;2,OsRFPHC-13, OsNLA, NLA, OsNLA1, OsNLA1.1, OsNLA1.2, OsNLA1.3,  OsRING269, RING269,OsRFPHC-1, OsNLA2, NLA2, OsNLA2.1, OsNLA2.2, OsRING348, RING348,OsPT1, PHT1-1, OsPht1;1, Pht1;1, OsPHT1;1, PHT1;1,OsPT8, PHT1-8, OsPht1;8, Pht1;8, PHT1;8, OsPHT1;8
45093	29217595	Shao J.F., Yamaji N., Liu X.W., Yokosho K., Shen R.F., Ma J.F.	Preferential Distribution of Boron to Developing Tissues Is Mediated by the Intrinsic Protein OsNIP3.	Plant Physiol.	176(2)	1739-1750	2018	ASA,LSI1	OsNIP3;1, NIP3;1, NIP3-1, OsNIP3.1, NIP3.1, OsASA,lsi1, NIP2-1, OsNIP2;1, NIP2;1, OsLsi1, lsi(t), OsNIP2.1/OsLsi1/OsSIIT1, OsNIP2.1, NIP2.1
45094	29269023	Wang L., Yuan J., Ma Y., Jiao W., Ye W., Yang D.L., Yi C., Chen Z.J.	Rice Interploidy Crosses Disrupt Epigenetic Regulation, Gene Expression, and Seed Development.	Mol Plant	11(2)	300-314	2018	MADS78,RAG,MET1B,FIE2,CMT2,4CL5,MFO1,CESA8,FLO2,CLF,CIN1,WOX5,RDR1,MET1A,WX1,FIE1,_	OsMADS78,MADS3, OsMADS3, OsMADS3(t), RMADS222, RAG1, rf3,OsMET1b, OsMET1-2, MET1b, MET1,OsFIE2, FIE, OsWD40-153,  OsDWD46, DWD46,OsCMT2, OsCMT3a, CMT3a,Os4CL5, 4CL3, Os4CL3,OsMADS6, MADS6, OsMFO1,OsCesA8, OsCESA8, OS_CESA08, CesA8,flo2, flo3(t), Osflo2, Osflo3(t), Osflo-2, flo-2, FLO2-1, FLO2-2,OsSET24, SDG711, EZ1, OsCLF, OsSDG711,OSCIN1, OsCIN1,OsWOX2, Os WOX2, WOX2, OsWOX5, OsWOX2L, WOX2L,OsRDR1,OsMET1a, OsMET1-1, MET1a, MET1-1, OsMET1, OsDMT702, DMT702,wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx,OsFIE1, OsWD40-154, OsEnS-116, OsFIE1/OsWD40-154, WD40-154 ,OsLTP1.20, OsLtpI.20, LTP1.20, OsLTPL14, LTPL14
45095	29242377	Wang J., Wang S., Hu K., Yang J., Xin X., Zhou W., Fan J., Cui F., Mou B., Zhang S., Wang G., Sun W.	The Kinase OsCPK4 Regulates a Buffering Mechanism That Fine-Tunes Innate Immunity.	Plant Physiol.	176(2)	1835-1849	2018	RLCK57,PR10A,CDPK4,PAL1,RLCK176	OsRLCK57,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsCDPK4, OsCPK4, CPK4, CDPK1,OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6,OsRLCK176
45096	28981755	Zhang H., Zhao Y., Zhou D.X.	Rice NAD+-dependent histone deacetylase OsSRT1 represses glycolysis and regulates the moonlighting function of GAPDH as a transcriptional activator of glycolytic genes.	Nucleic Acids Res.	45(21)	12241-12255	2017	SRT701,GAPC	osSRT701, OsSIRT701, OsSRT1, SRT1, OS-SIR2,OsGapC3, OGapC3, OsGAPDH1, GAPDH1, OsGapC1
45097	29312373	Park H.L., Bhoo S.H., Kwon M., Lee S.W., Cho M.H.	Biochemical and Expression Analyses of the Rice Cinnamoyl-CoA reductase Gene Family.	Front Plant Sci	8	2099	2017	CCR20,CCR26,CCR19,CCR7,CCR18,CCR29,CCR27,CCR23,CCR16,CCR1,CCR10,CCR34,CCR15,CCR31,CCR33,CCR24,CCR21,CCR17,CCR12,CCR6,CCR3,CCR8,_,CCR5,CCR11,CCR35,CCR28,CCR30,CCR22,CCR4,SNL6,CCR32,CCR13	OS-CCR, OsCCR, CCR, OsCCR20, OsCCR14, CCR14 ,OsCCR26,OsCCR19 ,OsCCR7,OsCCR, CCR, OsCCR18,OsCCR29, OsDFR6, DFR6,OsCCR27,OsCCR23,OsCCR16,OsCCR1,OsCCR10, CCR10,OsCCR34,OsCCR15, OsDFR8, DFR8,OsCCR31,OsCCR33,OsCCR24,OsCCR21 ,OsCCR17,CCR1, OsCCR1, OsCCR12,OsCCR6,OsCCR3,OsCCR8,CCR1, OsCCR1, OsCCR14, CCR14 ,OsCCR5, OsCCR2, CCR2,OsCCR11,OsCCR35,OsCCR28,OsCCR30,OsCCR22,OsCCR4, OsCCR1, CCR1 ,Snl6, OsSNL6, OsCCR2, CCR2 ,OsCCR32,OsCCR13
45098	29312424	Ye Y., Li P., Xu T., Zeng L., Cheng D., Yang M., Luo J., Lian X.	<i>OsPT4</i> Contributes to Arsenate Uptake and Transport in Rice.	Front Plant Sci	8	2197	2017		
45099	29326740	Ansari A., Wang C., Wang J., Wang F., Liu P., Gao Y., Tang Y., Zhao K.	Engineered Dwarf Male-Sterile Rice: A Promising Genetic Tool for Facilitating Recurrent Selection in Rice.	Front Plant Sci	8	2132	2017	SD1,EAT1	sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2, OsPHQ1, OsPHq1, PHq1,OsEAT1, OsbHLH141, EAT1/DTD1, bHLH141, DTD1, DTD, DLN120, OsDLN120
45100	29285618	Chapagain S., Park Y.C., Kim J.H., Jang C.S.	Oryza sativa salt-induced RING E3 ligase 2 (OsSIRP2) acts as a positive regulator of transketolase in plant response to salinity and osmotic stress.	Planta	247(4)	925-939	2018	DXS1,_	CLA1, OsDXS1, dxs1, OsDXS, DXS, OsTKL1, TKL1,OsRFP, OsSIRP2, SIRP2,  OsRING131, RING131
45101	29281685	Luebbert C.C., Clarke T.M., Pointet R., Frahm G.E., Tam S., Lorbetskie B., Sauv? S., Johnston M.J.W.	Nanoparticle size and production efficiency are affected by the presence of fatty acids during albumin nanoparticle fabrication.	PLoS ONE	12(12)	e0189814	2017		
45102	29213047	Peng M., Shahzad R., Gul A., Subthain H., Shen S., Lei L., Zheng Z., Zhou J., Lu D., Wang S., Nishawy E., Liu X., Tohge T., Fernie A.R., Luo J.	Differentially evolved glucosyltransferases determine natural variation of rice flavone accumulation and UV-tolerance.	Nat Commun	8(1)	1975	2017	UGT705A2,UGT88C3,UGT707A2,UGT706E1,UGT707A3,UGT706D3,UGT707A4,UGT706D2,UGT705A1,UGT706E2,UGT706C1,LTG5,UGT706F1,UGT706B1,UGT707A5,UGT706D1,UGT706J1,UGT706G6,UGT706C3,UGT88C2,_	OsUGT705A2,OsUGT88C3,UGT, OsUGT707A2,OsUGT706E1, OsUGT1, UGT1,OsUGT707A3,OsUGT706D3,OsUGT707A4,OsUGT706D2,OsUGT705A1,OsUGT706E2,OsUGT706C1,OsUGT706C4, UGT706C4, OsLTG5,OsUGT706F1,OsUGT706B1,OsUGT707A5,UGT, OsUGT706D1,OsUGT706J1,OsUGT706G6,OsUGT706C3,OsUGT88C2,UGT705A3, OsUGT705A3
45103	28801881	Shah S.H., Noureen A., Deeba F., Sultana T., Dukowic-Schulze S., Chen C., Naqvi S.M.S.	Transgenic Analysis Reveals 5' Abbreviated OsRGLP2 Promoter(s) as Responsive to Abiotic Stresses.	Mol. Biotechnol.	59(11-12)	459-468	2017		
45104	29255144	Liu C., Chen G., Li Y., Peng Y., Zhang A., Hong K., Jiang H., Ruan B., Zhang B., Yang S., Gao Z., Qian Q.	Characterization of a major QTL for manganese accumulation in rice grain.	Sci Rep	7(1)	17704	2017		
45105	29229567	Fu S., Xu Y., Li C., Li Y., Wu J., Zhou X.	Rice Stripe Virus Interferes with S-acylation of Remorin and Induces Its Autophagic Degradation to Facilitate Virus Infection.	Mol Plant	11(2)	269-287	2018	REM1.4	OsREM1.4
45106	29262706	Yumnam J.S., Rai M., Tyagi W.	In silico characterisation of novel rice transcripts differentially expressed in phosphorus dificient conditions suggests a role of these transcripts in multiple abiotic stresses.	Acta. Biol. Hung.	68(4)	398-411	2017		
45107	29257952	Zhang Z., Li J., Li F., Liu H., Yang W., Chong K., Xu Y.	OsMAPK3 Phosphorylates OsbHLH002/OsICE1 and Inhibits Its Ubiquitination to Activate OsTPP1 and Enhances Rice Chilling Tolerance.	Dev. Cell	43(6)	731-743.e5	2017	TPP1,_,MSRMK2,BHLH2	OsTPP1, OsTPS, TPP,OsHOS1, HOS1,OsMSRMK2, OsMAPK5, OsMAP1, OsMPK3, OsBIMK1, OsMAPK2, MPK5, BIMK1, MAPK2, MAPK5, MPK3, OsMPK5, OsMAPK3, OsMAPK5b, MAPK3,OsbHLH002, bHLH002, OsbHLH2, bHLH2, OsICE1, ICE1, OsbHLH002/OsICE1
45108	29186482	Niu M., Wang Y., Wang C., Lyu J., Wang Y., Dong H., Long W., Wang D., Kong W., Wang L., Guo X., Sun L., Hu T., Zhai H., Wang H., Wan J.	ALR encoding dCMP deaminase is critical for DNA damage repair, cell cycle progression and plant development in rice.	J. Exp. Bot.	68(21-22)	5773-5786	2017	ST2	ALR, OsDCD, DCD
45109	29358653	Guo J., Xu C., Wu D., Zhao Y., Qiu Y., Wang X., Ouyang Y., Cai B., Liu X., Jing S., Shangguan X., Wang H., Ma Y., Hu L., Wu Y., Shi S., Wang W., Zhu L., Xu X., Chen R., Feng Y., Du B., He G.	Bph6 encodes an exocyst-localized protein and confers broad resistance to planthoppers in rice.	Nat. Genet.	50(2)	297-306	2018	BPH6,EXO70X1	Bph6, OsBPH6,OsEXO70X1, OsExo70X1, OrysaX1_Exo70, OsEXO70E1, OsExo70E1, EXO70E1
45110	29358651	Stein J.C., Yu Y., Copetti D., Zwickl D.J., Zhang L., Zhang C., Chougule K., Gao D., Iwata A., Goicoechea J.L., Wei S., Wang J., Liao Y., Wang M., Jacquemin J., Becker C., Kudrna D., Zhang J., Londono C.E.M., Song X., Lee S., Sanchez P., Zuccolo A., Ammiraju J.S.S., Talag J., Danowitz A., Rivera L.F., Gschwend A.R., Noutsos C., Wu C.C., Kao S.M., Zeng J.W., Wei F.J., Zhao Q., Feng Q., El Baidouri M., Carpentier M.C., Lasserre E., Cooke R., Rosa Farias DD., da Maia LC., Dos Santos RS., Nyberg K.G., McNally K.L., Mauleon R., Alexandrov N., Schmutz J., Flowers D., Fan C., Weigel D., Jena K.K., Wicker T., Chen M., Han B., Henry R., Hsing Y.C., Kurata N., de Oliveira AC., Panaud O., Jackson S.A., Machado C.A., Sanderson M.J., Long M., Ware D., Wing R.A.	Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza.	Nat. Genet.	50(2)	285-296	2018		
45111	29444864	Koide Y., Ogino A., Yoshikawa T., Kitashima Y., Saito N., Kanaoka Y., Onishi K., Yoshitake Y., Tsukiyama T., Saito H., Teraishi M., Yamagata Y., Uemura A., Takagi H., Hayashi Y., Abe T., Fukuta Y., Okumoto Y., Kanazawa A.	Lineage-specific gene acquisition or loss is involved in interspecific hybrid sterility in rice.	Proc. Natl. Acad. Sci. U.S.A.	115(9)	E1955-E1962	2018	_,S1,TP1	SSP ,,OsTP1, S1TP, OgTPR1, S1TPR
45112	29463697	Ma B., Zhou Y., Chen H., He S.J., Huang Y.H., Zhao H., Lu X., Zhang W.K., Pang J.H., Chen S.Y., Zhang J.S.	Membrane protein MHZ3 stabilizes OsEIN2 in rice by interacting with its Nramp-like domain.	Proc. Natl. Acad. Sci. U.S.A.	115(10)	2520-2525	2018	EIL1A,EIN2,MHZ3	EIL1, OsEIL1, EIL1a, OsEIL1a, MHZ6/OsEIL1, MHZ6, OsMHZ6,OsEIN2, MHZ7/OsEIN2, OsEIN2/MHZ7, MHZ7 ,OsMHZ3
45113	29459009	Akbar N., Gupta S., Tiwari A., Singh K.P., Kumar A.	Characterization of metabolic network of oxalic acid biosynthesis through RNA seq data analysis of developing spikes of finger millet (Eleusine coracana): Deciphering the role of key genes involved in oxalate formation in relation to grain calcium accumulation.	Gene	649	40-49	2018		
45114	29432165	Zhou X., Liao H., Chern M., Yin J., Chen Y., Wang J., Zhu X., Chen Z., Yuan C., Zhao W., Wang J., Li W., He M., Ma B., Wang J., Qin P., Chen W., Wang Y., Liu J., Qian Y., Wang W., Wu X., Li P., Zhu L., Li S., Ronald P.C., Chen X.	Loss of function of a rice TPR-domain RNA-binding protein confers broad-spectrum disease resistance.	Proc. Natl. Acad. Sci. U.S.A.	115(12)	3174-3179	2018	BSR-K1 ,_,_,PAL1,PAL,_,_,PAL1	OsBSR-K1, BSRK1 ,OsPAL05, PAL05, OsPAL3, PAL5, PAL3, OsPAL2;3, PAL2;3, OsPAL2-1, PAL2-1,OsPAL04, PAL04, PAL, OsPAL7, PAL7,OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6,OsPAL, OsPAL08, PAL2, GP-28, GP28, PAL08, OsPAL2, OsPAL8, PAL8,OsPAL02, PAL02, OsPAL5, PAL5, OsPAL2. PAL2, OsPAL1,OsPAL07, OsPAL, PAL07, OsPAL6, PAL6, PAL1, OsPAL7, PAL7,OsPAL, Pal1*, Pal1, PAL, Pal_1, PalI, PAL2, OsPAL01, PAL01, OSPAL, CP-1, GP-1, OsPAL1, PAL3, OsPAL3
45115	29475937	Wang W., Hu B., Yuan D., Liu Y., Che R., Hu Y., Ou S., Liu Y., Zhang Z., Wang H., Li H., Jiang Z., Zhang Z., Gao X., Qiu Y., Meng X., Liu Y., Bai Y., Liang Y., Wang Y., Zhang L., Li L., Sodmergen, Jing H., Li J., Chu C.	Expression of the Nitrate Transporter Gene <i>OsNRT1.1A/OsNPF6.3</i> Confers High Yield and Early Maturation in Rice.	Plant Cell	30(3)	638-651	2018	NPF6.5,GLN1;2,HTNE,PSR1,_,HD3A,NRT2.1,GLT1,RFT1,_,AMT1;1,EF1,NPF6.3	OsNRT1.1B, NRT1.1B, OsNPF6.5,OsGLN1;2, GSr, RGS8, OsGS1;2, GS1;2, GS1, OsGS1-2, GS1-2, OsGS1.2, GS1.2,NRT2.3, OsNRT2.3, OsNRT2;1, OsNRT2.3a, OsNRT2.3b, OsNRT2;3a, OsNRT2.5 ,PSR1, NiR, OsNiR, OsNIR1, NIR1, FD-NiR, OsNiR2,OsNIA2, NIA2, OsNR2, NR2, OsNR3, NR3, OsNR1.2, NR1.2,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,OsNRT2.1, OsNRT2.2,OsGLT1, OsNADH-GOGAT1, NADH-GOGAT1, OsNADH-GOGAT, GOGAT, NADH-GOGAT, OsGOGAT1, GOGAT1, OsGLU1,FT-L 3, OsFTL3, FTL3, FT-L3, RFT, OsRFT1,OsNR1, NR1, nia1, OsNIA1, NIA1, OsNIA2, NIA2,OsAMT1;1, OsAMT1:1, OsAMT1, AMT1-1, AMT1, OsAMT1p, OsAMT1-1, Osamt1-1, "OsAMT1,1", OsAMT1.1, AMT1.1, FCO12,Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,OsNRT1.1A, NRT1.1A, OsNRT1.1A/ OsNPF6.3, OsNPF6.3
45116	29335547	Zhao Q., Feng Q., Lu H., Li Y., Wang A., Tian Q., Zhan Q., Lu Y., Zhang L., Huang T., Wang Y., Fan D., Zhao Y., Wang Z., Zhou C., Chen J., Zhu C., Li W., Weng Q., Xu Q., Wang Z.X., Wei X., Han B., Huang X.	Pan-genome analysis highlights the extent of genomic variation in cultivated and wild rice.	Nat. Genet.	50(2)	278-284	2018	HD3A,GW6A,AN1,GLW7 ,SE1,SNK1,GHD7,SUB1A,SNK2,WX1,SD1,PSTOL1,_,TT1,COLD1,BH4,SPK	Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,OsglHAT1, glHAT1, GW6a, OsGW6a, OsGNAT1, GNAT1,An-1, OsbHLH093, RAE1, An-1/RAE1, RAE1/An-1, OsRAE1, OsAn-1, OgRAE1,OsSPL13, SPL13, OsGLW7,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, OsHd1,  Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,SK1, OsSK1, OsSNK1, SK1C9285,Ghd2, Ghd7, OsGhd7, OsCCT26, OsCMF8, OsI, Ghd7/Hd4, Hd4, EH7-1/Hd4, Ghd7-0a, EH7-1, EH7/Ghd7, EH7, OsEH7, GLW7.1, OsGLW7.1,Sub1A, Sub1A-1, Sub1A-2, OsSUB1A,SK2, OsSK2, OsSNK2,wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx,sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2, OsPHQ1, OsPHq1, PHq1,Pstol1, OsPSTOL1, OsPSTOL, PSTOL, Pstol1/OsPupK46-2, OsPupK46-2, Pup1, PHO,IBF1, OsFBX310, FBX310,  OsFBX310, FBX310,OsPAB1, PAB1, OsTT1,OsCOLD1,Bh4, OsBH4, OsATL14, ATL14,Spk(t), Spk(t)*), Spk, OsTAC1, TAC1, qTAC9 
45117	29355682	Yang Z., Zhang Y., Sun L., Zhang P., Liu L., Yu P., Xuan D., Xiang X., Wu W., Cao L., Cheng S.	Identification of CYP703A3-3 and analysis of regulatory role of CYP703A3 in rice anther cuticle and pollen exine development.	Gene	649	63-73	2018	ABCG26,TDR,CYP703A3,GAMYB,CYP704B2,ABCG15,DPW2	OsABCG26,tdr, OsbHLH005, bHLH005, OsbHLH5, bhlh5, TDR1, OsTDR, OsTDR1, OsMYC5, MYC5,OsCYP703A3,OsGAMYB, GAM1, OsGAMyb, Os-MYBGA, Os GAMYB, OsMYBGA, MYBGA, Os2R_MYB15, 2R_MYB15 ,OsCYP704B2,OsABCG15, PDA, PDA1, OsABCG15/PDA1,OsDPW2
45118	29576089	Cui Y., Li M., Yin X., Song S., Xu G., Wang M., Li C., Peng C., Xia X.	OsDSSR1, a novel small peptide, enhances drought tolerance in transgenic rice.	Plant Sci.	270	85-96	2018	DSSR1	OsDSSR1
45119	29194535	Xia K., Zeng X., Jiao Z., Li M., Xu W., Nong Q., Mo H., Cheng T., Zhang M.	Formation of Protein Disulfide Bonds Catalyzed by OsPDIL1;1 is Mediated by MicroRNA5144-3p in Rice.	Plant Cell Physiol.	59(2)	331-342	2018	MIR5144,PDIL1-1	miR5144, osa-miR5144, osa-MIR5144, MIR5144-5p, MIR5144-3posa-miR5144-3p osa-miR5144-5p,OsPDIL1;1, PDIL1;1, PDIL 1-1, PDI, OsPDIL1-1, OsTrx28, Trx28
45120	29485753	Chen J., Hu L., Sun L., Lin B., Huang K., Zhuo K., Liao J.	A novel Meloidogyne graminicola effector, MgMO237, interacts with multiple host defence-related proteins to manipulate plant basal immunity and promote parasitism.	Mol. Plant Pathol.			2018	CHT1,WRKY70,KS4,_,_,GSL8,EDS1	Cht1*(Chi1), Ch16, Cht1, CHT-1, CH16, RC24, OsChia1a, OsChia1, Chi1, Cht1*, Chi-1, Cht-1, Cht1, RCC1, OsCht-1, PR3, OsPR3,OsWRKY70,OsKS4, KS4, KSL4, OsKSL4, DTS2, OsDTS2, OsTPS16, TPS16, TPS8, OsTPS8,OsBetvI, BetvI,OsDUF26, CRRSP, OsCRRSP55, CRRSP55,OsGSL8, OsGSC, GSC, CRR1, OsCRR1, CalS9, OsCalS9,OsEDS1
45121	28992306	Sade N., Umnajkitikorn K., Rubio Wilhelmi MDM., Wright M., Wang S., Blumwald E.	Delaying chloroplast turnover increases water-deficit stress tolerance through the enhancement of nitrogen assimilation in rice.	J. Exp. Bot.	69(4)	867-878	2018	ABC1,CV,_,ASN1,GS2,PSR1,GLN1;3,GDH2	OsABC1, SPL32, OsSPL32, OsGLU, OsFd-GOGAT, Fd-GOGAT, ABC1/ OsFd-GOGAT ,OsCV,OsNR1, NR1, nia1, OsNIA1, NIA1, OsNIA2, NIA2,OsASN1, OsAS1, AS1,OsGS2, GLN2, OsGLN2, RGS31, OsRGS31,PSR1, NiR, OsNiR, OsNIR1, NIR1, FD-NiR, OsNiR2,OsGLN1;3, OsGS1;3, GS1;3,OsGDH2
45122	29314052	Liu C., Qu X., Zhou Y., Song G., Abiri N., Xiao Y., Liang F., Jiang D., Hu Z., Yang D.	OsPRR37 confers an expanded regulation of the diurnal rhythms of the transcriptome and photoperiodic flowering pathways in rice.	Plant Cell Environ.	41(3)	630-645	2018		
45123	29479359	Ning X., Sun Y., Wang C., Zhang W., Sun M., Hu H., Liu J., Yang L.	A Rice CPYC-type Glutaredoxin <i>OsGRX20</i> in Protection against Bacterial Blight, Methyl Viologen and Salt Stresses.	Front Plant Sci	9	111	2018	APX1,NOE1,SODB,GRX20,CATB	OsAPX1, APXa, OsAPXa, OsAPx01, OsAPx1, OSAPX1, APx1, cAPX, APX2, cAPXa, OscAPXa,CATC, OsCat, OsCatC, OsCATC, OsNOE1, noe1, catC, OsCATC, CAT3, OsCAT3, LLM9428, OsLLM9428,SodB, Fe-SOD, Fe- SOD, OsFe-SOD, Fe+-SOD, OsFe+-SOD, OsFe-SODa, OsFe-SODb, OsFeSODb, FeSODb, OsFSD1.2, FSD1.2, FeSOD2, OsFSD2, FSD2, OsFSD1, FSD1, ALM1, OsALM1,OsGRX20,CatB, CAT-B, OsCatB, OsCATB, OsCAT1B, CAT1B, CAT2, OsCAT2
45124	29483672	Xu X., Walter W.J., Liu Q., Machens I., Nick P.	A rice class-XIV kinesin enters the nucleus in response to cold.	Sci Rep	8(1)	3588	2018	BC12,_,_,SRS3,_,DLK	bc12, gdd, GDD1, BC12/GDD1, OsGDD1, OsBC12/GDD1, OsBC12, LGW, OsLGW,OsKCH1, KCH1, OsKCH, KCH, O12,OsACK1, ACK1,OsSRS3, SAR1, OsSAR1, KIN13A, OsKIN13A,OsKCBP, KCBP,OsDLK
45125	29453664	Lavania D., Dhingra A., Grover A.	Analysis of transactivation potential of rice (Oryza sativa L.) heat shock factors.	Planta	247(6)	1267-1276	2018	HSFA2E,HSFC2B,HSFB2C,HSFB4B,HSFA6,HSFB4D,HSFA2B,HSFB4A,HSFB2A,SPL7,HSFA7,HSFB4C,HSFC2A,HSFC1A,HSFA4A,HSFA2C,HSFB2B,HSFA2D,HSFB1,HSFA2A,HSFC1B,HSFA1,HSFA3,HSFA5,HSFA9	HSfA2e, OsHsfA2e, OsHsf-12, OsHSF12, HSF12, OsHsfA2a, HsfA2a,HSfC2b, OsHsfC2b, OsHsf-16, HSF16, OsHSF16,HSfB2c, OsHsfB2c, OsHsf-24, HSF24, OsHSF24 ,HSFB4b, OsHSFB4b, OsHsf-19, OsHSF19, rHsf12, OsHSF12, HSF12, HSF19,HSfA6, OsHsfA6, OsHsf-17, HSF17, OsHSF17, HSFA6A, OsHsfA2f, HsfA2f, OsHsfA7b, HsfA7b,OsHsfB4d, HSfB4d, OsHsf-10, HSF10, OsHSF10,HSfA2b, OsHsfA2b, OsHsf-18, rHsf5, HS1, HSF18, OsHSF18, HSF5, OsHSF5,HSfB4a, OsHsfB4a, OsHsf-20, HSF20, OsHSF20,HSfB2a, OsHsfB2a, OsHsf-14, rHsf1, HSF1, HSF14, OsHSF14,spl7, HSFA4D, HSF10, HSF15, OsHSF15, SP17, OsHsf-15, rHsf10, OsHsfA4d, HSfA4d, lrd13, HSF1,OsHsfA7, OsHsf-01, HSFA6B, HSF01, OsHSF1, HSF1, OsEnS-9, OsHsfA7a, HsfA7a ,HSfB4c, OsHsfB4c, OsHsf-22, HSF22, OsHSF22,HSfC2a, OsHsfC2a, OsHsf-05, HSF05, OsHSF5, HSF5,HSfC1a, OsHsfC1a, OsHsf-02, OsHSF2, HSF2, rHsf13, HSF02, HSF13,OsHsfA4a, OsHsf-04, HSFA4B, HSF04, OsHSF4, HSF4, HSF9, OsHsfA4b, OsHSF9,HSfA2c, OsHsfA2c, OsHsf-25, rHsf6, OsHSF6, HSF25, OsHSF25, HSF6, OsHsfA6a, HsfA6a ,HSfB2b, OsHsfB2b, OsHsf-21, rHsf2, HSF2, HSF21, OsHSF21, OsHSF7,HSfA2d, OsHsfA2d, OsHsf-08, rHsf7, HSF08, OsHSF8, HSF8, HSF7, OsHSF7, OsHSFA2dI, OsHSFA2dII, OsHSFA2dIII, OsHsfA6b, HsfA6b, OsHsf2d, Hsf2d,HSfB1, OsHsfB1, OsHsf-23, HSF23, OsHsf23, OsHSF23, TBF1 ,HSfA2a, OsHsfA2a, OsHsf-11, rHsf4, OsHSF11, HSF11, HSF4, RHSP2, OsHsfA2a-1, OsHsfA2a-2, OsHsfA2a-3, OsHsfA2a-4, OsHsfA2a-5, OsHsfA2a-6, OsHsfA2e, HsfA2e ,OsHsfC1b, HsfC1b, HSF03, OsHsf-03, OsHSF3, HSF3, HSF11,  rHsf11,OsHsfA1, HsfA1, OsHSF13, HSF13, OsHsf-13, HSF3, rHsf3, OsHsfA1a,HSfA3, OsHsfA3, OsHsf-07, HSF07, OsHSF7, HSF7, DLN57, OsDLN57,HSfA5, OsHsfA5, OsHsf-06, HSF06, OsHSF6, HSF6,HSfA9, OsHsfA9, OsHsf-09, rHsf8, HSF09, OsHSF9, HSF9, HSF8, OsHsfA8, HsfA8 
45126	29541083	Dou M., Zhang Y., Yang S., Feng X.	Identification of <i>ZHOUPI</i> Orthologs in Rice Involved in Endosperm Development and Cuticle Formation.	Front Plant Sci	9	223	2018	BHLH144,_	OsbHLH144, OsEnS-65, bHLH144, EnS-65, OsZOU-1, OsZOU1, ZOU-1, ZOU1,OsbHLH146, bHLH146, OsZOU-2, OsZOU2, ZOU-2, ZOU2
45127	29487282	Liu Q., Han R., Wu K., Zhang J., Ye Y., Wang S., Chen J., Pan Y., Li Q., Xu X., Zhou J., Tao D., Wu Y., Fu X.	G-protein betagamma subunits determine grain size through interaction with MADS-domain transcription factors in rice.	Nat Commun	9(1)	852	2018	ARF9,MADS55,LK3,ARF14,KAN1,RGB1,PAP2,RGG1,PIN1B,RGG2,LHS1	OsARF9,OsMADS55, DLN163, OsDLN163,lk3(t), lk3(t)*, SG3, GS3, SG3-GS3, OsGW3, OsGS3, RGG3/GS3/Mi/OsGGC1, RGG3, Mi, OsGGC1, GGC1, OsSYL3, SYL3, TT2, OsTT2,OsARF14, OsETT4, ETT4, DLN153, OsDLN153, OsARF3la, ARF3la,OsKAN1, OsKAN2, KAN2,OsWD40-80, RGbeta1, OsRGB1,  OsDWD38, DWD38,MADS34, OsMADS34, RMADS212/RMADS217/RMADS221, OsPAP2/MADS34, MADS34/PAP2, PAP2/OsMADS34, OsMADS34/PAP2, OsMADS19,OsRGG1,PIN1A, OsPIN1A, OsPIN1a, REH1, OsPIN1, OsPIN1b, REH1/OsPIN1,OsRGG2,OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO, OsLHS1, OsLG3b, LG3b, qLGY3, LGY3, DLN80, OsDLN80, OLR, OsOLR, GW3p6, OsGW3p6, OsMADS1GW3p6, MADS1GW3p6, qLGY3/OsLG3b/GW3p6
45128	29205590	Yang C., Ma Y., He Y., Tian Z., Li J.	OsOFP19 modulates plant architecture by integrating the cell division pattern and brassinosteroid signaling.	Plant J.	93(3)	489-501	2018	D2, LIC,DWARF4,_,CYP734A2,CYP734A4,XTH2,LG1,DLT,OSH1,CYP734A6	d2, dwf2, CYP90D2, D2/CYP90D2, OsD2, SMG11, OsSMG11, D2/SMG11, OsD2a, OsD2b,OsC3H46, C3H46, OsLIC, OsFLA6, FLA6,OsDWARF4, osdwarf4, OsDWF4, DWF4, CYP90B2, OsCYP90B2, D4, OsD4,OsOFP13, OsOFP19, OFP13, OFP19,OsCYP734A2,OsCYP734A4,OsXTH2, XTR1, OsXTR1,SPL8, OsSPL8, OsLG1,dlt, OsGRAS32, OsDLT, OsDLT1, DTL1, OsGRAS-32, OsGRAS32, GRAS-32, GRAS32, SMOS2/DLT, SMOS2, OsSMOS2, OsGS6, GS6,OSKN1, Oskn1, OsKN1, OSH1/Oskn1, HB75,OsCYP734A6 
45129	29411384	Liu X., Li D., Zhang D., Yin D., Zhao Y., Ji C., Zhao X., Li X., He Q., Chen R., Hu S., Zhu L.	A novel antisense long noncoding RNA, TWISTED LEAF, maintains LEAF blade flattening by regulating its associated sense R2R3-MYB gene in rice.	New Phytol.	218(2)	774-788	2018	MYB11,ZFP7 ,TL	OsMyb11, Myb11, OsMYB60, MYB60, Os2R_MYB93, 2R_MYB93 ,OsZFP7 ,
45130	29319227	He L., Zhang S., Qiu Z., Zhao J., Nie W., Lin H., Zhu Z., Zeng D., Qian Q., Zhu L.	FRUCTOKINASE-LIKE PROTEIN 1 interacts with TRXz to regulate chloroplast development in rice.	J Integr Plant Biol	60(2)	94-111	2018	HSA1,WLP2,WP2	OsHSA1, OsFLN2, FLN2, HSA1/OsFLN2,OsWLP2, OsFLN1, FLN1, HSA2,TRXZ, OsPAP10, PAP10, OsPAP10/OsTRXz, OsTRXz, TRXz, OsTrx25, Trx25
45131	29501997	Mahmood T., Tahir T., Munir F., Shinwari Z.K.	Characterization of regulatory elements in OsRGLP2 gene promoter from different rice accessions through sequencing and in silico evaluation.	Comput Biol Chem	73	206-212	2018		
45132	29385597	Wei J., Zheng Y., Feng H., Qu H., Fan X., Yamaji N., Ma J.F., Xu G.	OsNRT2.4 encodes a dual-affinity nitrate transporter and functions in nitrate-regulated root growth and nitrate distribution in rice.	J. Exp. Bot.	69(5)	1095-1107	2018	NRT2.4,NAR2.1,HTNE,NRT2.2,MADS61,MADS57,MADS25,MADS23,NAR2.2,MADS27,NRT2.1	OsNRT2.4,OsNAR2.1, OsNRT3.1A,NRT2.3, OsNRT2.3, OsNRT2;1, OsNRT2.3a, OsNRT2.3b, OsNRT2;3a, OsNRT2.5 ,OsNRT2.2, OsNRT2.1,OsMADS61, MADS-27b,OsMADS57, MADS-57,OsMADS25,OsMADS23, MADS-23,OsNAR2.2, OsNRT3.1B,OsMADS27, MADS-27a, OsSTA66, OsMADS27a,OsNRT2.1, OsNRT2.2
45133	29426868	Das P.K., Biswas R., Anjum N., Das A.K., Maiti M.K.	Rice matrix metalloproteinase OsMMP1 plays pleiotropic roles in plant development and symplastic-apoplastic transport by modulating cellulose and callose depositions.	Sci Rep	8(1)	2783	2018	MMP1 	OsMMP1 
45134	29411094	Zou T., Liu M., Xiao Q., Wang T., Chen D., Luo T., Yuan G., Li Q., Zhu J., Liang Y., Deng Q., Wang S., Zheng A., Wang L., Li P., Li S.	OsPKS2 is required for rice male fertility by participating in pollen wall formation.	Plant Cell Rep.	37(5)	759-773	2018	STRL2,CYP704B2,NP1 ,PKS10,ACS9,MS2,CYP703A3,LAP6	OsSTRL2, OsSSL1, SSL1,OsCYP704B2,OS-ACE, OsNP1, OsTMS18, TMS18,OsPKS10, OsPKS2, PKS2, OsCHS10, CHS10,OsACS9, 4CL4, OsACOS12, ACOS12 ,OsMS2, OsDPW, DPW, DPW1, OsDPW1, OsFAR2, FAR2,OsCYP703A3,OsPKS1, PKS1, YY2, OsPKS21, PKS21, OsLAP6/OsPKS1, OsLAP6, OsCHS22, CHS22
45135	29576066	Li J., Guo X., Zhang M., Wang X., Zhao Y., Yin Z., Zhang Z., Wang Y., Xiong H., Zhang H., Todorovska E., Li Z.	OsERF71 confers drought tolerance via modulating ABA signaling and proline biosynthesis.	Plant Sci.	270	131-139	2018		
45136	29479720	Ren L., Tang D., Zhao T., Zhang F., Liu C., Xue Z., Shi W., Du G., Shen Y., Li Y., Cheng Z.	OsSPL regulates meiotic fate acquisition in rice.	New Phytol.	218(2)	789-803	2018	GSL5,RAD21-4,SPEAR2,_,UGP2,PAIR2,_,PHS1,TCP5,WD40-66,MEL1,ASP1,MEL2,SPL,_,_	OsGSL5, OsSTA170, CalS5, OsCalS5,OsRad21-4, REC8, OsREC8, OsRAD21-4,OsSPEAR2, SPEAR2, OsTIE1, TIE1,OsSPEAR3, SPEAR3,Ugp2, OsUgp2,Pair2, OsPAIR2, OsASY1,OsSPEAR6, SPEAR6,OsPHS1,OsTCP5,OsWD40-66, TPR3, OsTPR3, TPR1, OsTRP1, OsTPR3, OsTPL2, TPL2, OsTPL, TPL,mel1, OsMEL1, MEAL1, OsMEAL1, OsAGO5c ,OsLIS-L1, OsWD40-155, ASP1, TPR2, OsTPR2, OsREL2, REL2, OsTPL3, TPL3, OsTPL2, TPL2, ASP-LSL,OsMEL2,  OsRING430, RING430,OsSPL,OsSPEAR1, SPEAR1,OsSPEAR4, SPEAR4
45137	29479793	Yu J., Miao J., Zhang Z., Xiong H., Zhu X., Sun X., Pan Y., Liang Y., Zhang Q., Abdul Rehman RM., Li J., Zhang H., Li Z.	Alternative splicing of OsLG3b controls grain length and yield in japonica rice.	Plant Biotechnol. J.			2018	LHS1	OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO, OsLHS1, OsLG3b, LG3b, qLGY3, LGY3, DLN80, OsDLN80, OLR, OsOLR, GW3p6, OsGW3p6, OsMADS1GW3p6, MADS1GW3p6, qLGY3/OsLG3b/GW3p6
45138	29446441	Inahashi H., Shelley I.J., Yamauchi T., Nishiuchi S., Takahashi-Nosaka M., Matsunami M., Ogawa A., Noda Y., Inukai Y.	OsPIN2, which encodes a member of the auxin efflux carrier proteins, is involved in root elongation growth and lateral root formation patterns via the regulation of auxin distribution in rice.	Physiol Plant			2018		
45139	29331375	Ma L., Wang Q., Yuan M., Zou T., Yin P., Wang S.	Xanthomonas TAL effectors hijack host basal transcription factor IIA alpha and gamma subunits for invasion.	Biochem. Biophys. Res. Commun.	496(2)	608-613	2018		
45140	29464319	Zhao Q., Zhou L., Liu J., Cao Z., Du X., Huang F., Pan G., Cheng F.	Involvement of CAT in the detoxification of HT-induced ROS burst in rice anther and its relation to pollen fertility.	Plant Cell Rep.	37(5)	741-757	2018	CATB,CATA,NOE1	CatB, CAT-B, OsCatB, OsCATB, OsCAT1B, CAT1B, CAT2, OsCAT2,CATA1, Cat A1*, OSCAT-A, Cat2, CatA1, CAT-A, OsCatA, OsCAT, CAT, catA, OSCATA, OsCATc, OsCATA, OsCAT1A, CAT1, OsCAT1, OsCATC, OsCAT2,CATC, OsCat, OsCatC, OsCATC, OsNOE1, noe1, catC, OsCATC, CAT3, OsCAT3, LLM9428, OsLLM9428
45141	29356222	Beier M.P., Obara M., Taniai A., Sawa Y., Ishizawa J., Yoshida H., Tomita N., Yamanaka T., Ishizuka Y., Kudo S., Yoshinari A., Takeuchi S., Kojima S., Yamaya T., Hayakawa T.	Lack of ACTPK1, an STY kinase, enhances ammonium uptake and use, and promotes growth of rice seedlings under sufficient external ammonium.	Plant J.	93(6)	992-1006	2018	ACTPK6,ACTPK5,AMT1;1,AMT1;2,ILA1,ACTPK3,ACTPK2,ACTPK1	OsACTPK6,OsACTPK5,OsAMT1;1, OsAMT1:1, OsAMT1, AMT1-1, AMT1, OsAMT1p, OsAMT1-1, Osamt1-1, "OsAMT1,1", OsAMT1.1, AMT1.1, FCO12,OsAMT1;2, AMT1-2, Osamt1-3, "OsAMT1,3", OsAMT1;3, OsAMT1.3, OsAMT1.2, AMT1.2,OsILA1, OsACTPK4, ACTPK4, OsMAPKKK43, MAPKKK43,OsACTPK3,OsACTPK2,OsACTPK1, ACTPK1-1, ACTPK1-2
45142	29282651	Biswas S., Amin U.S.M., Sarker S., Rahman M.S., Amin R., Karim R., Tuteja N., Seraj Z.I.	Introgression, Generational Expression and Salinity Tolerance Conferred by the Pea DNA helicase?45 Transgene into Two Commercial Rice Genotypes, BR28 and BR47.	Mol. Biotechnol.	60(2)	111-123	2018		
45143	29440594	Jiang P., Wang S., Jiang H., Cheng B., Wu K., Ding Y.	The COMPASS-Like Complex Promotes Flowering and Panicle Branching in Rice.	Plant Physiol.	176(4)	2761-2771	2018	_,SET33,GHD7,RFT1,MADS51,EF1,_,HD3A	OsWD40-86, WD40-86, OsWDR5a, WDR5a, OsWDR5, WDR5,  OsDWD41, DWD41,OsSET33, OsSDG723, SDG723, OsTrx1, Trx1, OsTrx1/SDG723, DLN219, OsDLN219,Ghd2, Ghd7, OsGhd7, OsCCT26, OsCMF8, OsI, Ghd7/Hd4, Hd4, EH7-1/Hd4, Ghd7-0a, EH7-1, EH7/Ghd7, EH7, OsEH7, GLW7.1, OsGLW7.1,FT-L 3, OsFTL3, FTL3, FT-L3, RFT, OsRFT1,OsMADS51, OsMADS65, MADS65, qHd1, DLN36, OsDLN36,Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,OsWD40-144, WD40-144, OsWDR5b, WDR5b,  OsDWD28, DWD28,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a 
45144	29345105	Zhang Y.J., Zhang Y., Zhang L.L., Huang H.Y., Yang B.J., Luan S., Xue H.W., Lin W.H.	OsGATA7 modulates brassinosteroids-mediated growth regulation and influences architecture and grain shape.	Plant Biotechnol. J.	16(7)	1261-1264	2018	GATA7	OsGATA7
45145	29467779	Yoon H., Yang J., Liang W., Zhang D., An G.	<i>OsVIL2</i> Regulates Spikelet Development by Controlling Regulatory Genes in <i>Oryza sativa</i>.	Front Plant Sci	9	102	2018		
45146	29576087	Manuka R., Saddhe A.A., Kumar K.	Expression of OsWNK9 in Arabidopsis conferred tolerance to salt and drought stress.	Plant Sci.	270	58-71	2018		
45147	29193704	Liu Y., Xu C., Zhu Y., Zhang L., Chen T., Zhou F., Chen H., Lin Y.	The calcium-dependent kinase OsCPK24 functions in cold stress responses in rice.	J Integr Plant Biol	60(2)	173-188	2018	GRX10,CDPK24,P5CS	OsGRX10,OsCDPK24, OsCPK24, OsCDPK14, CPK24,OsP5CS, P5CS1, OsP5CS1, OsALDH18B1, ALDH18B1, OsP5CS-1, P5CS-1
45148	29440759	Jing L., Rui X., Chunchao W., Lan Q., Xiaoming Z., Wensheng W., Yingbin D., Lizhen Z., Yanyan W., Yunlian C., Lifang Z., Weihua Q., Qingwen Y.	A heading date QTL, qHD7.2, from wild rice (Oryza rufipogon) delays flowering and shortens panicle length under long-day conditions.	Sci Rep	8(1)	2928	2018	HD2	Hd2(t), Hd2, qHD2(t), OsPRR37, Os-PRR37, PRR37, Prr4, OsPRR4, DTH7, Os DTH7, OsCCT28, CCT28, Ghd7.1, PRR37/Hd2, EH7-2, EH7-2/Hd2, Hd2/PRR37, PRR37-1a, PRR37-1b, PRR37-1c, PRR37-2a, PRR37- 2, HD7.2
45149	29424430	Huang X., Peng X., Xie F., Mao W., Chen H., Sun M.X.	The stereotyped positioning of the generative cell associated with vacuole dynamics is not required for male gametogenesis in rice pollen.	New Phytol.	218(2)	463-469	2018	CIN3,GCD1,MST8,SUT5,SUT3,WX1,SUT1,_	OSINV4, OsINV4, INV4, OsCIN3,OsGCD1,OsMST8, OSMST8, OsSTP8, STP8,OsSUT5(t), OsSUT5Z, OsSUT5,OsSUT3(t), OsSUT3, SUC3, OsSUT2,wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx,OsSUT1, OsSUT2,OsGEX2, GEX2
45150	29479779	Lu K., Wu B., Wang J., Zhu W., Nie H., Qian J., Huang W., Fang Z.	Blocking amino acid transporter OsAAP3 improves grain yield by promoting outgrowth buds and increasing tiller number in rice.	Plant Biotechnol. J.			2018	AAP12A,CKX8,CKX10,CKX6,CKX5,GN1A,CKX11,CKX9,CKX4,CKX3	OsAAP12A, OsAAP3, AAP3,OsCKX8,OsCKX10,OsCKX6,OsCKX5, ckx5,Gn1a, OsCKX2, CKX2, ckx2, Gn1a/OsCKX2, Os CKX2, CKX2/Gn1a,OsCKX11,OsCKX9,OsCKX4, ckx4, OsSCRM, OsSCRM2, SCRM, SCRM2,OsCKX3, ckx3
45151	29463069	Lee H.Y., Yoon G.M.	Regulation of Ethylene Biosynthesis by Phytohormones in Etiolated Rice (<i>Oryza sativa</i> L.) Seedlings.	Mol. Cells	41(4)	311-319	2018	ACO4,ACS1,ACO3,ACO2,ACS2,ACO5	OsACO4,ACC1*, OsACS1, Os-ACS1, ACC1, OsACC1,OsACO3, ACO2, OsACO2,OsACO2, OsACO1,OsACS2, Os-ACS2,OsACO5, 2-ODD14, Os2-ODD14, 2ODD14, Os2ODD14
45152	29453663	Xiong W., Wang P., Yan T., Cao B., Xu J., Liu D., Luo M.	The rice "fruit-weight 2.2-like" gene family member OsFWL4 is involved in the translocation of cadmium from roots to shoots.	Planta	247(5)	1247-1260	2018	FWL3,FWL6,FWL7,PCR1,FWL4,FWL8	OsFWL3, OsFWL2/OsPCR5, OsFWL2, OsPCR5, FWL2, PCR5,OsFWL6, OsCNR10, CNR10, OsFWL5/OsPCR1, OsFWL5, OsPCR1, FWL5, PCR1 ,OsFWL7, PGPS/D12, PGPS, D12, OsFWL6, FWL6,OsFWL5, FWL5, OsPcr1, OsPCR1, OsFWL5/OsPCR1, OsFWL7, FWL7,OsFWL4, OsFWL8, FWL8,OsFWL8
45153	29448154	Ciarkowska A., Ostrowski M., Jakubowska A.	A serine carboxypeptidase-like acyltransferase catalyzes synthesis of indole-3-acetic (IAA) ester conjugate in rice (Oryza sativa).	Plant Physiol. Biochem.	125	126-135	2018		
45154	29462612	Luo S., Luo T., Liu Y., Li Z., Fan S., Wu C.	N-terminus plus linker domain of Mg-chelatase D subunit is essential for Mg-chelatase activity in Oryza sativa.	Biochem. Biophys. Res. Commun.	497(2)	749-755	2018		
45155	29193778	Zhang X.B., Feng B.H., Wang H.M., Xu X., Shi Y.F., He Y., Chen Z., Sathe A.P., Shi L., Wu J.L.	A substitution mutation in OsPELOTA confers bacterial blight resistance by activating the salicylic acid pathway.	J Integr Plant Biol	60(2)	160-172	2018	SPLHM47	splHM47, HM47, OsPelo, OsPELO, PELO, LML1, OsLML1
45156	29300985	Ma J., Chen J., Wang M., Ren Y., Wang S., Lei C., Cheng Z., Sodmergen	Disruption of OsSEC3A increases the content of salicylic acid and induces plant defense responses in rice.	J. Exp. Bot.	69(5)	1051-1064	2018	TIFY11D,EXO70B1,PAD4,RLS2,POX3006,_,PAL1,AOX1B,TIFY11C,EDS1,LOX11,SEC3A,GSTF10,PR10A,SNAP32	OsTIFY11d, OsJAZ1, JAZ1, OsJAZ 12, OsJAZ12, JAZ12,OsEXO70B1, OsExo70B1, OrysaB1_Exo70,OsPAD4,OsEXO70A1, OsExo70A1, EXO70A1, OrysaA1_Exo70,POX3006, prx114, Osprx114, PO-C1, POC-1, POC1, OsPOC1, Prx14, OsPrx14, POD3006, OsPOD3006,OsSTA254, STA254 OsSEC3B, SEC3B ,OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6,AOX1b, OsAOX1b,OsJAZ2, JAZ2, OsJAZ 11, OsJAZ11, Os-JAZ11, JAZ11, OsTIFY11c, OsJAZ1, JAZ1,OsEDS1,OsLOX11, OsRCI-1, RCI-1, OsBphi262, OsLOX12, OsLOX2.2, LOX2.2, LOX2.1, OsLOX2.1, OsLOX14, LOX14,OsSEC3A,OsGSTF10,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsSNAP32
45157	29426861	Xue Z., Xu X., Zhou Y., Wang X., Zhang Y., Liu D., Zhao B., Duan L., Qi X.	Deficiency of a triterpene pathway results in humidity-sensitive genic male sterility in rice.	Nat Commun	9(1)	604	2018	_	OsOSC12/OsPTS1, OsOSC12, OsPTS1, OSC12, PTS1 
45158	29266248	Nuoendagula, Tsuji Y., Takata N., Sakamoto S., Nakagawa-Izumi A., Taniguchi T., Ralph J., Mitsuda N., Kajita S.	Change in lignin structure, but not in lignin content, in transgenic poplar overexpressing the rice master regulator of secondary cell wall biosynthesis.	Physiol Plant	163(2)	170-182	2018	_	ONAC007, ONAC7, OsSND1, SND1, OsSWN1, SWN1, DLN157, OsDLN157
45159	29484500	Wang J., Lu K., Nie H., Zeng Q., Wu B., Qian J., Fang Z.	Rice nitrate transporter OsNPF7.2 positively regulates tiller number and grain yield.	Rice (N Y)	11(1)	12	2018	FC1,D17,D3,SLB1,NPF7.2,SLB2,D10,D27,D14	fc1, OsTB1, tb1, OsTB1/FC1, Os TB1, TB1, OsFC1, MP3, OsMP3,d17(t), dwf14, d17, htd1, OsCCD7, CCD7, D17/HTD1, HTD1, OsHTD1, OsD17,d3, dwf3, D3/OsMAX2, Os_F0760, SOL1, OsORE9, ORE9, MAX2, OsRFPH2-10, RFPH2-10, OsD3,  OsFBL27, FBL27,OsSLB1, Os900/CYP711A2, Os900, CYP711A2, OsCYP711A2, OsCO, CO,OsNPF7.2,CYP711A1, OsCYP711A1, Os1400/CYP711A3, Os1400, CYP711A3, OsCYP711A3, OsMAX1-1400, MAX1-1400,d10(d15,d16), d16, d15, dwf9, d10, OsCCD8b, OsCCD8, CCD8, OsD10,d27(d t), dt, dwf23, d27, OsD27,d14(d10), dwf13, d10, d14, D88, HTD2, OsHTD2, OsD14, qPPB3, D88/D14, HTD4
45160	29382838	Kimura E., Abe T., Murata K., Kimura T., Otoki Y., Yoshida T., Miyazawa T., Nakagawa K.	Identification of OsGGR2, a second geranylgeranyl reductase involved in alpha-tocopherol synthesis in rice.	Sci Rep	8(1)	1870	2018	LYL1,LYL2	OsChl P, CHL P, ChlP, OsGGRI, GGRI, OsGGR, GGR, OsGGR1, GGR1, OsGGR1/LYL1/OsChl P,OsGGRII, GGRII, OsGGR2, GGR2
45161	29356349	Yin X., Zou B., Hong X., Gao M., Yang W., Zhong X., He Y., Kuai P., Lou Y., Huang J., Hua J., He Z.	Rice copine genes OsBON1 and OsBON3 function as suppressors of broad-spectrum disease resistance.	Plant Biotechnol. J.			2018	BON3,PR1A,BON1 ,PR4	OsBON3, OsC2DP45, C2DP45, OsvWA16, vWA16,OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1, OsPR1b, PR1alpha, OsPR1alpha,OsBON1, OsC2DP18, C2DP18, OsvWA5, vWA5,OsPR4, OsPR4a, PR4a, OsPR-4
45162	29237030	Wang X., Zou B., Shao Q., Cui Y., Lu S., Zhang Y., Huang Q., Huang J., Hua J.	Natural variation reveals that OsSAP16 controls low-temperature germination in rice.	J. Exp. Bot.	69(3)	413-421	2018	SAP16	OsSAP16, ZOS7-05, OsZOS7-05
45163	29414311	Weerawanich K., Webster G., Ma J.K., Phoolcharoen W., Sirikantaramas S.	Gene expression analysis, subcellular localization, and in planta antimicrobial activity of rice (Oryza sativa L.) defensin 7 and 8.	Plant Physiol. Biochem.	124	160-166	2018		
45164	29385213	Shi X., Long Y., He F., Zhang C., Wang R., Zhang T., Wu W., Hao Z., Wang Y., Wang G.L., Ning Y.	The fungal pathogen Magnaporthe oryzae suppresses innate immunity by modulating a host potassium channel.	PLoS Pathog.	14(1)	e1006878	2018		
45165	29329517	Chung P.J., Jung H., Choi Y.D., Kim J.K.	Genome-wide analyses of direct target genes of four rice NAC-domain transcription factors involved in drought tolerance.	BMC Genomics	19(1)	40	2018		
45166	29330772	Lee H., Cha J., Choi C., Choi N., Ji H.S., Park S.R., Lee S., Hwang D.J.	Rice WRKY11 Plays a Role in Pathogen Defense and Drought Tolerance.	Rice (N Y)	11(1)	5	2018		
45167	29335785	Hwang S.G., Lee C.Y., Tseng C.S.	Heterologous expression of rice 9-cis-epoxycarotenoid dioxygenase 4 (OsNCED4) in Arabidopsis confers sugar oversensitivity and drought tolerance.	Botanical Studies	59(1)	2	2018	NCED1,NCED3	OSNCED1, OsNCED-1, OsNCED3, OsNced3, NCED3, OsNCED9, NCED9,OSNCED3, OsNCED-3, OsNCED3, OsNCED3a, NCED3a, OsNCED4, NCED4, OsNECD2, OsNCED2b, NCED2b 
45168	29321675	He S.L., Jiang J.Z., Chen B.H., Kuo C.H., Ho S.L.	Overexpression of a constitutively active truncated form of OsCDPK1 confers disease resistance by affecting OsPR10a expression in rice.	Sci Rep	8(1)	403	2018		
45169	29309410	Li Z., Wang F., Zhao Q., Liu J., Cheng F.	Involvement of NADPH oxidase isoforms in the production of O2- manipulated by ABA in the senescing leaves of early-senescence-leaf (esl) mutant rice (Oryza sativa).	PLoS ONE	13(1)	e0190161	2018	RBOHC,RBOHE,RBOHG,RBOHF,_,_,RBOHB,RBOHA	rbohC, OsrbohC, Os rbohC, OsRbohC, OsNox5, Nox5, OsrbohD, OsRboh5, RBOHA, OsRboh5, Rboh5,rbohE, OsrbohE, Os rbohE, OsRbohE, OsNox3, Nox3, OsRboh3, Rboh3,rbohG, OsrbohG, Os rbohG, OsRbohG, OsNox7, Nox7, OsrbohB, OsRBOHB, RBOHB, OsRboh7, Rboh7,RbohF, rbohF, OsrbohF, Os rbohF, OsNox6, Nox6, OsrbohE, rbohE, OsRboh6, Rboh6,OsFRO7, FRO7, OsFRO1 ,FRO1,ESL,rbohB, OsrbohB, Os rbohB, OsRbohB, OsNox1, Nox1, Os-RbohB, RbohB, OsRboh1, Rboh1,rbohA, OsrbohA, Os rbohA, OsRbohA, OsNox2, Nox2, OsRboh2, Rboh2
45170	29247559	Lee K., Lee H.Y., Back K.	Rice histone deacetylase 10 and Arabidopsis histone deacetylase 14 genes encode N-acetylserotonin deacetylase, which catalyzes conversion of N-acetylserotonin into serotonin, a reverse reaction for melatonin biosynthesis in plants.	J. Pineal Res.	64(2)		2018	HDAC10	OsHDAC10, HDA714, OsHDA714, ASDAC, OsASDAC
45171	29320982	Wei K., Chen H.	Global identification, structural analysis and expression characterization of cytochrome P450 monooxygenase superfamily in rice.	BMC Genomics	19(1)	35	2018		
45172	29313187	Sharma N., Dang T.M., Singh N., Ruzicic S., Mueller-Roeber B., Baumann U., Heuer S.	Allelic variants of OsSUB1A cause differential expression of transcription factor genes in response to submergence in rice.	Rice (N Y)	11(1)	2	2018	SUB1A	Sub1A, Sub1A-1, Sub1A-2, OsSUB1A
45173	29295941	Borah P., Khurana J.P.	The OsFBK1 E3 Ligase Subunit Affects Anther and Root Secondary Cell Wall Thickenings by Mediating Turnover of a Cinnamoyl-CoA Reductase.	Plant Physiol.	176(3)	2148-2165	2018	CCR4,CCR5,DIR48,CCR20,FBOX33	OsCCR4, OsCCR1, CCR1 ,OsCCR5, OsCCR2, CCR2,OsDIR48, OsjDIR48,OS-CCR, OsCCR, CCR, OsCCR20, OsCCR14, CCR14 ,OsFbox033, OsFbox33, Fbox33, Os_F0114, OsFBK1, FBK1 ,  OsFBK1, FBK1
45174	29301377	He Y., Li L., Zhang Z., Wu J.L.	Identification and Comparative Analysis of Premature Senescence Leaf Mutants in Rice (Oryza sativa L.).	Int J Mol Sci	19(1)		2018	YGL10,PSL89,FGL,PSL50,PSL117,HEMA,NCED3,PSBS1,RBCL,AMTR1,NCED1,NCED1,PSBA,ABA8OX3,ABA1,PSL15,PSL270,CAB2R,RCCR1,KAT1,ABA8OX2,SGR,YGL98,ABA8OX1	CAO, OsCAO, CAO1, OsCAO1, Oslls1, Lls1, DVR, PGL,OsPSL89,fgl(fl), fl, fgl, OsFGL, OsPorB, PoPA, PORA, porA, OsPORA, PORB, OsPORB,OsPSL50,OsPSL117,HEMA1, OsHEMA, GluTR, OsHEMA1, hemA,OSNCED3, OsNCED-3, OsNCED3, OsNCED3a, NCED3a, OsNCED4, NCED4, OsNECD2, OsNCED2b, NCED2b ,OsPsbS1, PsbS1, psbS, OsPSBS,rbcL, rbcA, OsrbcL,Osh36, OsH36, H36, OsAMTR1,OSNCED1, OsNCED-1, OsNCED3, OsNced3, NCED3, OsNCED9, NCED9,OsNCED1, OsCCD4a, CCD4a,PsbA, psbA, OsPsbA, PSBD1, OsPSBD1, psbD1,OsABA8OX3, OsABA8ox3, CYP707A7, OsCYP707A7, OsAba-ox3, OsABA8ox3, OsABA8'ox3, ABA8'ox3, OsABAX3, ABAX3, OsABA8'OH3, ABA8'OH3,OsABA1, Zep1, OsAba1, Aba2, OsAba2, OsZep1, Zep, OsZep, Aba1, OsABA2, Osaba1, OsZEP-1, OsZEP, OSZEP1, ZEP1, ZEP,OsPSL15,OsPSL270,Oscab2R, CAB-2, OsLhcp, Lhcb1, Lhcb1a, OsLhcb1, OsLhcb1a ,OsRCCR1, OsRCCR, RCCR,OsI57, I57, OsKAT1, OsACAA1, ACAA1,OsABA8OX2, OsABA8ox2, CYP707A6, OsCYP707A6, OsAba-ox2, OsABA8ox2, OsABA8OH2, ABA8OH2, ABA8'-OH2, OsABA8'ox2, ABA8'ox2, OsABAX2, ABAX2, OsABA8'OH2, ABA8'OH2,sgr(t), sgr, OsSGR, OsSgr, SGR1, OsSGR1,OsChlD, ChlD, CHLD, OsCHLD, Ygl7, YGL3, OsvWA12, vWA12,OsABA8OX1, CYP707A5, OsCYP707A5, ABA8ox1, OsABA8ox1, OsABA8'OH1, ABA8'OH1 
45175	29190752	Zhang T., Huang L., Wang Y., Wang W., Zhao X., Zhang S., Zhang J., Hu F., Fu B., Li Z.	Differential transcriptome profiling of chilling stress response between shoots and rhizomes of Oryza longistaminata using RNA sequencing.	PLoS ONE	12(11)	e0188625	2017		
45176	29133823	Balyan S., Kumar M., Mutum R.D., Raghuvanshi U., Agarwal P., Mathur S., Raghuvanshi S.	Identification of miRNA-mediated drought responsive multi-tiered regulatory network in drought tolerant rice, Nagina 22.	Sci Rep	7(1)	15446	2017	MIR528,MIR398B,miR159F,MIR397A,MIR408,SPL9,MIR2878,MIR1871	miR528, Osa-miR528, OsmiR528, OsMIR528, osa-MIR528, miR528*, osa-miR528, osa-miR528-5p, MIR528-T1, MIR528-T2,miR398b, osa-miR398b, osa-MIR398b, OsmiR398b,OsmiR159f, osa-MIR159f,miR397a, osa-miR397a, osa-MIR397a, OsmiR397a,miR408, osa-MIR408osa-miR408 osa-miR408-3p osa-miR408-5p, OsMIR408 ,OsSPL9,miR2878, osa-miR2878, osa-MIR2878, osa-miR2878-5p, osa-miR2878-3posa-miR2878-3p osa-miR2878-5p,miR1871, osa-miR1871, osa-MIR1871
45177	29122595	Yin D., Liu X., Shi Z., Li D., Zhu L.	An AT-hook protein DEPRESSED PALEA1 physically interacts with the TCP Family transcription factor RETARDED PALEA1 in rice.	Biochem. Biophys. Res. Commun.	495(1)	487-492	2018		
45178	29133370	Shangguan X., Zhang J., Liu B., Zhao Y., Wang H., Wang Z., Guo J., Rao W., Jing S., Guan W., Ma Y., Wu Y., Hu L., Chen R., Du B., Zhu L., Yu D., He G.	A mucin-like protein of Planthopper Is Required for Feeding and Induces Immunity Response in Plants.	Plant Physiol.	176(1)	552-565	2018		
45179	29163563	Rahman M.H., Zhang Y., Zhang K., Rahman M.S., Barman H.N., Riaz A., Chen Y., Wu W., Zhan X., Cao L., Cheng S.	Genetic Dissection of the Major Quantitative Trait Locus (qSE11), and Its Validation As the Major Influence on the Rate of stigma exsertion in Rice (<i>Oryza sativa</i> L.).	Front Plant Sci	8	1818	2017		
45180	29310269	Liang L., Wang X., Sun Y., Ma P., Li X., Piao H., Jiang Y., Song D.	Magnetic solid-phase extraction of triazine herbicides from rice using metal-organic framework MIL-101(Cr) functionalized magnetic particles.	Talanta	179	512-519	2018		
45181	29101885	Kumar Dubey A., Kumar N., Ranjan R., Gautam A., Pande V., Sanyal I., Mallick S.	Application of glycine reduces arsenic accumulation and toxicity in Oryza sativa L. by reducing the expression of silicon transporter genes.	Ecotoxicol. Environ. Saf.	148	410-417	2018		
45182	29115926	Tan M., Cheng D., Yang Y., Zhang G., Qin M., Chen J., Chen Y., Jiang M.	Co-expression network analysis of the transcriptomes of rice roots exposed to various cadmium stresses reveals universal cadmium-responsive genes.	BMC Plant Biol.	17(1)	194	2017		
45183	29151804	Dixit S., Singh A., Sandhu N., Bhandari A., Vikram P., Kumar A.	Combining drought and submergence tolerance in rice: marker-assisted breeding and QTL combination effects.	Mol. Breed.	37(12)	143	2017		
45184	29116179	Zhang X., Zuo B., Song Z., Wang W., He Y., Liu Y., Cai D.	Breeding and study of two new photoperiod- and thermo-sensitive genic male sterile lines of polyploid rice (Oryza sativa L.).	Sci Rep	7(1)	14744	2017		
45185	29156580	Jo Y.M., Cho K., Lee H.J., Lim S.H., Kim J.S., Kim Y.M., Lee J.Y.	Cellular Localization of Wheat High Molecular Weight Glutenin Subunits in Transgenic Rice Grain.	Int J Mol Sci	18(11)		2017		
45186	29158416	Lu L., Chen J., Robb S.M.C., Okumoto Y., Stajich J.E., Wessler S.R.	Tracking the genome-wide outcomes of a transposable element burst over decades of amplification.	Proc. Natl. Acad. Sci. U.S.A.	114(49)	E10550-E10559	2017		
45187	29161274	Rais A., Jabeen Z., Shair F., Hafeez F.Y., Hassan M.N.	Bacillus spp., a bio-control agent enhances the activity of antioxidant defense enzymes in rice against Pyricularia oryzae.	PLoS ONE	12(11)	e0187412	2017		
45188	28941326	Tang H., Chen G., Chen F., Han L., Peng Y.	Development and relative fitness of Cry1C resistance in Chilo suppressalis.	Pest Manag. Sci.	74(3)	590-597	2018		
45189	29098463	Rahman M.A., Bimpong I.K., Bizimana J.B., Pascual E.D., Arceta M., Swamy B.P.M., Diaw F., Rahman M.S., Singh R.K.	Mapping QTLs using a novel source of salinity tolerance from Hasawi and their interaction with environments in rice.	Rice (N Y)	10(1)	47	2017		
45190	29225594	Liu Z., Li X., Sun F., Zhou T., Zhou Y.	Overexpression of <i>OsCIPK30</i> Enhances Plant Tolerance to <i>Rice stripe virus</i>.	Front Microbiol	8	2322	2017		
45191	29167676	Yang Z., Zhang Z., Zhang T., Fahad S., Cui K., Nie L., Peng S., Huang J.	The Effect of Season-Long Temperature Increases on Rice Cultivars Grown in the Central and Southern Regions of China.	Front Plant Sci	8	1908	2017		
45192	28888162	Liu X., Li X., Dai C., Zhou J., Yan T., Zhang J.	Improved short-term drought response of transgenic rice over-expressing maize C4 phosphoenolpyruvate carboxylase via calcium signal cascade.	J. Plant Physiol.	218	206-221	2017		
45193	29094211	Fan Y., Zhang Q.	Genetic and molecular characterization of photoperiod and thermo-sensitive male sterility in rice.	Plant Reproduction	31(1)	3-14	2018		
45194	29106621	Shi W., Yin X., Struik P.C., Solis C., Xie F., Schmidt R.C., Huang M., Zou Y., Ye C., Jagadish S.V.K.	High day- and night-time temperatures affect grain growth dynamics in contrasting rice genotypes.	J. Exp. Bot.	68(18)	5233-5245	2017		
45195	29209408	Xiong X., Duan L., Liu L., Tu H., Yang P., Wu D., Chen G., Xiong L., Yang W., Liu Q.	Panicle-SEG: a robust image segmentation method for rice panicles in the field based on deep learning and superpixel optimization.	Plant Methods	13	104	2017		
45196	29202329	Zhao Q., Zhou L., Liu J., Du X., Asad M.A., Huang F., Pan G., Cheng F.	Relationship of ROS accumulation and superoxide dismutase isozymes in developing anther with floret fertility of rice under heat stress.	Plant Physiol. Biochem.	122	90-101	2018		
45197	29158982	Yao S., Deng L., Zeng K.	Genome-wide <i>in silico</i> identification of membrane-bound transcription factors in plant species.	PeerJ	5	e4051	2017		
45198	29172939	Sakamoto T., Kitano H., Fujioka S.	Rice ERECT LEAF 1 acts in an alternative brassinosteroid signaling pathway independent of the receptor kinase OsBRI1.	Plant Signal Behav	12(12)	e1396404	2017		
45199	29162059	Zhao Y., Wen H., Teotia S., Du Y., Zhang J., Li J., Sun H., Tang G., Peng T., Zhao Q.	Suppression of microRNA159 impacts multiple agronomic traits in rice (Oryza sativa L.).	BMC Plant Biol.	17(1)	215	2017		
45200	29194644	Chiu C.H., Choi J., Paszkowski U.	Independent signalling cues underpin arbuscular mycorrhizal symbiosis and large lateral root induction in rice.	New Phytol.	217(2)	552-557	2018		
45201	29250098	Chatterjee A., Huma B., Shaw R., Kundu S.	Reconstruction of <i>Oryza sativa indica</i> Genome Scale Metabolic Model and Its Responses to Varying RuBisCO Activity, Light Intensity, and Enzymatic Cost Conditions.	Front Plant Sci	8	2060	2017		
45202	29156306	Cao Q., Rediske R.R., Yao L., Xie L.	Effect of microcystins on root growth, oxidative response, and exudation of rice (Oryza sativa).	Ecotoxicol. Environ. Saf.	149	143-149	2018		
45203	29113428	Dangol S., Singh R., Chen Y., Jwa N.S.	Visualization of Multicolored in vivo Organelle Markers for Co-Localization Studies in Oryza sativa.	Mol. Cells	40(11)	828-836	2017		
45204	29133783	Huo X., Wu S., Zhu Z., Liu F., Fu Y., Cai H., Sun X., Gu P., Xie D., Tan L., Sun C.	NOG1 increases grain production in rice.	Nat Commun	8(1)	1497	2017	AOC,_,_,AOS2,OG1,NOG1	OsAOC, AOC1, OsAOC1, HB, CPM2, OsAOC4, AOC4,OsDAD1;3, DAD1;3,Lox2:Os:1, OsLOX9, LOX9, OsLOX8, LOX8, OsLOX2, LOX2, OsRLL, OsHI-LOX, HI-LOX, RLL2 LOX, RLL2, Lox2osPil, OsLOX2;1, LOX2;1, OsLOX1, OsLOX7, LOX7,OsAOS2, CYP74A2, OsAOS, OsAOS1,OsOPR7, OPR7, OsOPR13, OsOPR3, OsOPR5, OsOPR9, OsOPR08-1,  OPR13, OPR3, OPR5, OPR9, OPR08-1, OsOPR8, OPR8,OsNOG1
45205	29163626	He H., Ji Y., Zhu S., Li B., Zhao R., Jiang Z., Bie T.	Genetic, Physical and Comparative Mapping of the Powdery Mildew Resistance Gene <i>Pm21</i> Originating from <i>Dasypyrum villosum</i>.	Front Plant Sci	8	1914	2017		
45206	29116162	Jiang S., Lu Y., Dai Y., Qian L., Muhammad A.B., Li T., Wan G., Parajulee M.N., Chen F.	Impacts of elevated CO2 on exogenous Bacillus thuringiensis toxins and transgene expression in transgenic rice under different levels of nitrogen.	Sci Rep	7(1)	14716	2017		
45207	29249980	Peng L., Zhao Y., Wang H., Song C., Shangguan X., Ma Y., Zhu L., He G.	Functional Study of Cytochrome P450 Enzymes from the Brown Planthopper (<i>Nilaparvata lugens</i> St?l) to Analyze Its Adaptation to BPH-Resistant Rice.	Front Physiol	8	972	2017		
45208	29143605	Teplyakova S., Lebedeva M., Ivanova N., Horeva V., Voytsutskaya N., Kovaleva O., Potokina E.	Impact of the 7-bp deletion in HvGA20ox2 gene on agronomic important traits in barley (Hordeum vulgare L.).	BMC Plant Biol.	17(Suppl 1)	181	2017		
45209	29144205	Bia?as A., Zess E.K., De la Concepcion JC., Franceschetti M., Pennington H.G., Yoshida K., Upson J.L., Chanclud E., Wu C.H., Langner T., Maqbool A., Varden F.A., Derevnina L., Belhaj K., Fujisaki K., Saitoh H., Terauchi R., Banfield M.J., Kamoun S.	Lessons in Effector and NLR Biology of Plant-Microbe Systems.	Mol. Plant Microbe Interact.	31(1)	34-45	2018		
45210	29098311	Saito M., Tanaka T., Sato K., Vrinten P., Nakamura T.	A single nucleotide polymorphism in the "Fra" gene results in fractured starch granules in barley.	Theor. Appl. Genet.	131(2)	353-364	2018		
45211	28582707	Gao H., Wen L., Wu Y., Fu Z., Wu G.	An ultrasensitive label-free electrochemiluminescent immunosensor for measuring Cry1Ab level and genetically modified crops content.	Biosens Bioelectron	97	122-127	2017		
45212	29105533	Desaki Y., Miyata K., Suzuki M., Shibuya N., Kaku H.	Plant immunity and symbiosis signaling mediated by LysM receptors.	Innate Immun	24(2)	92-100	2018		
45213	29398938	Fan M., Wang X., Sun J., Zhang Q., Xu Z., Xu Q.	Effect of <i>indica</i> pedigree on eating and cooking quality in rice backcross inbred lines of <i>indica</i> and <i>japonica</i> crosses.	Breed. Sci.	67(5)	450-458	2017		
45214	29101356	Shen R., Wang L., Liu X., Wu J., Jin W., Zhao X., Xie X., Zhu Q., Tang H., Li Q., Chen L., Liu Y.G.	Genomic structural variation-mediated allelic suppression causes hybrid male sterility in rice.	Nat Commun	8(1)	1310	2017	_	Sc
45215	29170677	Hu Q., He Y., Wang L., Liu S., Meng X., Liu G., Jing Y., Chen M., Song X., Jiang L., Yu H., Wang B., Li J.	DWARF14, A Receptor Covalently Linked with the Active Form of Strigolactones, Undergoes Strigolactone-Dependent Degradation in Rice.	Front Plant Sci	8	1935	2017		
45216	29109405	Chen H., Luo J., Zheng P., Zhang X., Zhang C., Li X., Wang M., Huang Y., Liu X., Jan M., Liu Y., Hu P., Tu J.	Application of Cre-lox gene switch to limit the Cry expression in rice green tissues.	Sci Rep	7(1)	14505	2017		
45217	29190520	van der Putten PEL., Yin X., Struik P.C.	Calibration matters: On the procedure of using the chlorophyll fluorescence method to estimate mesophyll conductance.	J. Plant Physiol.	220	167-172	2018		
45218	29170911	Piao Z., Wang W., Wei Y., Zonta F., Wan C., Bai J., Wu S., Wang X., Fang J.	Characterization of an Acetohydroxy acid synthase mutant conferring tolerance to imidazolinone herbicides in rice (Oryza sativa).	Planta	247(3)	693-703	2018		
45219	29234339	Xiong J., Tao T., Luo Z., Yan S., Liu Y., Yu X., Liu G., Xia H., Luo L.	RNA Editing Responses to oxidative stress between a Wild Abortive Type Male-Sterile Line and Its Maintainer Line.	Front Plant Sci	8	2023	2017		
45220	29398949	Matsumoto K., Ota Y., Seta S., Nakayama Y., Ohno T., Mizobuchi R., Sato H.	Identification of QTLs for rice brown spot resistance in backcross inbred lines derived from a cross between Koshihikari and CH45.	Breed. Sci.	67(5)	540-543	2017		
45221	29176862	Koschmieder J., Fehling-Kaschek M., Schaub P., Ghisla S., Brausemann A., Timmer J., Beyer P.	Plant-type phytoene desaturase: Functional evaluation of structural implications.	PLoS ONE	12(11)	e0187628	2017		
45222	29209351	Park J.H., Tran L.H., Jung S.	Perturbations in the Photosynthetic Pigment Status Result in Photooxidation-Induced Crosstalk between Carotenoid and Porphyrin Biosynthetic Pathways.	Front Plant Sci	8	1992	2017		
45223	29175437	Zhang D., Xu Z., Cao S., Chen K., Li S., Liu X., Gao C., Zhang B., Zhou Y.	An Uncanonical CCCH-Tandem Zinc-Finger Protein Represses Secondary Wall Synthesis and Controls Mechanical Strength in Rice.	Mol Plant	11(1)	163-174	2018		
45224	29016933	Chen Y., Yang Q., Sang S., Wei Z., Wang P.	Rice Inositol Polyphosphate Kinase (OsIPK2) Directly Interacts with OsIAA11 to Regulate lateral root Formation.	Plant Cell Physiol.	58(11)	1891-1900	2017		
45225	29551940	Yang J., Liu L., Wang Y., Wang C., Yan J., Liu Y., Wang C., Li C.	Overexpression of <i>BAS1</i> in rice blast fungus can promote blast fungus growth, sporulation and virulence in <i>planta</i>.	Saudi J Biol Sci	24(8)	1884-1893	2017		
45226	29692099	Cao N., Chen X.R., He H.H., Zhu C.L., Cai S., Xu T., Xie H.W., Liu F.P.	[Effects of spraying P and K fertilizers during panicle primordium differentiation stage on cold resistance, yield and physiological characteristics of early rice].	Ying Yong Sheng Tai Xue Bao	28(11)	3562-3570	2017		
45227	29133372	Wang J., Hu P., Lin L., Chen Z., Liu Q., Wei C.	Gradually Decreasing Starch Branching Enzyme Expression Is Responsible for the Formation of Heterogeneous Starch Granules.	Plant Physiol.	176(1)	582-595	2018		
45228	29398948	Qi Y., Wang L., Gui J., Zhang L., Liu Q., Wang J.	Development and validation of a functional co-dominant SNP marker for the photoperiod thermo-sensitive genic male sterility <i>pms3</i> (<i>p/tms12-1</i>) gene in rice.	Breed. Sci.	67(5)	535-539	2017		
45229	29145412	Xia D., Zhou H., Qiu L., Jiang H., Zhang Q., Gao G., He Y.	Mapping and verification of grain shape QTLs based on an advanced backcross population in rice.	PLoS ONE	12(11)	e0187553	2017		
45230	29362087	Liu L., Xie T., Peng P., Qiu H., Zhao J., Fang J., Patil S.B., Wang Y., Fang S., Chu J., Yuan S., Zhang W., Li X.	Mutations in the mit3 gene encoding a caroteniod isomerase lead to increased tiller number in rice.	Plant Sci.	267	1-10	2018		
45231	29157132	Ye Z., Yamazaki K., Minoda H., Miyamoto K., Miyazaki S., Kawaide H., Yajima A., Nojiri H., Yamane H., Okada K.	In planta functions of cytochrome P450 monooxygenase genes in the phytocassane biosynthetic gene cluster on rice chromosome 2.	Biosci. Biotechnol. Biochem.	82(6)	1021-1030	2018		
45232	29184886	Moin M., Bakshi A., Madhav M.S., Kirti P.B.	Expression Profiling of Ribosomal Protein Gene Family in Dehydration Stress Responses and Characterization of Transgenic Rice Plants Overexpressing <i>RPL23A</i> for Water-Use Efficiency and Tolerance to Drought and Salt Stresses.	Front Chem	5	97	2017	RPL38,UBQ5,RPL51,RPS27,RPL29,RPS3AC,RPL19,ERF42,RPL5,RPL13A,RPL18A,RPS29,_,RPS23A,_,_,RPL28,RPL2,RPS25,RPS9-2,RPL37,RPL15,_,RPL21.2,_,_,RPL30E,_,RPL4,RPL6,RPL17,_,RPL34,RPS30,_,RPL31,_,RPS4,_,RPL35A.3,_,RPS5,RPL13B,RPS15A,RPS10A,_,_,RPL26.1,RPS7A,NAC6,RPL44,BZIP23,_,RPS28 ,RPL26,RPS6A,RPL36.2,_,_,RPS26,RPS24,_,BIP123,RPS18A,_,RPS17,RPL23A,ONAC2,_	OsRPL38, RPL38A, OsRPL38A,RPS27a, OsUBQ5, OsRPS27a,OsRPL51,OsRPS27,OsRPL29,RPS3a, Os RPS3a, RPS3aC, OsRPS3aC,RPL19.3, OsRPL19.3, OsRPL19, RPL19e, OsRPL19e,OsERF#042, OsERF042, OsERF42, AP2/EREBP#048, AP2/EREBP48, OsDREB2B, DREB2B, OsDREB2B2, OsDREB2A, DREB2A,rpl5, RL5, RPL18p/L5e, RPL18p, RPL5e, OsRPL5, OsRPL5e, OsRPL18p,OsRPL13a, RPL13a,rpl18a, RPL18a, OsRPL18a,OsRPS29,RPS25, OsRPS25,RPS23a, OsRPS23a,OsRPL7/L12, RPL7/L12, RPL7, RPL12, OsRPL7, OsRPL12,OsRPL5, RPL5,OsRPL28,rpl2, rpl8, RPL8, OsRPL2, OsRPL8,RPS25, RPS25a, OsRPS25, OsRPS25a ,OsRPS9-2,OsRPL37,OsRPL15,RPL12, RPL10, OsRPL12, OsRPL10,OsRPL21.2,OsRPL27.3, RPL27.3,RPS9, OsRPS9,OsRPL30e, RPL30e,OsRPL14, RPL14,OsRPL4,OsRPL6,RPL22, OsRPL17, OsRPL22,RPS4,OsRPL34,OsRPS30,RPS13, OsRPS13,OsRPL31,RPS5,rps4, RPS4a ,RPS4, RPS19, OsRPS4, OsRPS19 ,OsRPL35a.3, RPL35a.3,RPS23, OsRPS23,RPS5A, OsRPS5, OsRPS5A,RPL13b, OsRPL13b,RPS15a, OsRPS15a   ,RPS10a, OsRPS10a,RPS6, OsRPS6,rpL32_9.3, RPL32, OsrpL32_9.3, OsRPL32,OsRPL26.1,RPS7a, OsRPS7a,OsNAC6, ONAC048, NAC48, SNAC2, SNAC2/OsNAC6, OsNAC6/ONAC048, OsSNAC2, SNAC-2, OsSNAC-2, OsNAC2,OsRPL44,OsbZIP23, OsAREB1, OsABF2, Osbzip23, OsAREB2, OsZIP23, ZIP23,RPS10, OsRPS10,OsRPS28, OsRPS28e, RPS28e,RPL24b, OsRPL26, OsRPL24b,RPS6, RPS6a, OsRPS6A, OsRPS6, OsRPS6a,OsRPL36.2,RPS7, OsRPS7,rig, RPS15, OsRPS15,OsRPS26,OsRPS24,RPS21, OsRPS21,OsBIP123, RPL24a, OsRPL24a, RPL24B, OsRPL24B,RPS18a, OsRPS18a,RPS18, OsRPS18,OsRPS17,OsRPL23A,SNAC1, snac1, OsNAC9, ONAC002, ONAC2, ONAC033, ONAC33, ONAC043, ONAC43, ONAC044, ONAC44, OsNAC19, NAC19, SNAC1/ONAC002, OsSNAC1, OsNAC9, OsNAC1,RPS13, RPS13a, OsRPS13, OsRPS13a
45233	29293814	Wang X., Dong Q., Li X., Yuliang A., Yu Y., Li N., Liu B., Gong L.	Cytonuclear Variation of Rubisco in Synthesized Rice Hybrids and Allotetraploids.	Plant Genome	10(3)		2017		
45234	28960566	Li W.Q., Zhang M.J., Gan P.F., Qiao L., Yang S.Q., Miao H., Wang G.F., Zhang M.M., Liu W.T., Li H.F., Shi C.H., Chen K.M.	CLD1/SRL1 modulates leaf rolling by affecting cell wall formation, epidermis integrity and water homeostasis in rice.	Plant J.	92(5)	904-923	2017	SRL1	OsSRL1, CLD1/SRL1, CLD1, OsCLD1, OsSPARK9, SPARK9
45235	29162881	Feng X., Peng C., Chen Y., Liu X., Feng X., He Y.	Discrimination of CRISPR/Cas9-induced mutants of rice seeds using near-infrared hyperspectral imaging.	Sci Rep	7(1)	15934	2017		
45236	29162918	Hirotsu N., Ujiie K., Perera I., Iri A., Kashiwagi T., Ishimaru K.	Partial loss-of-function of NAL1 alters canopy photosynthesis by changing the contribution of upper and lower canopy leaves in rice.	Sci Rep	7(1)	15958	2017		
45237	29190793	Jiang C., Shen Q.J., Wang B., He B., Xiao S., Chen L., Yu T., Ke X., Zhong Q., Fu J., Chen Y., Wang L., Yin F., Zhang D., Ghidan W., Huang X., Cheng Z.	Transcriptome analysis of WRKY gene family in Oryza officinalis Wall ex Watt and WRKY genes involved in responses to Xanthomonas oryzae pv. oryzae stress.	PLoS ONE	12(11)	e0188742	2017		
45238	29105251	Li H., Li J., Xu R., Qin R., Song F., Li L., Wei P., Yang J.	Isolation of five rice nonendosperm tissue-expressed promoters and evaluation of their activities in transgenic rice.	Plant Biotechnol. J.	16(6)	1138-1147	2018		
45239	29163608	Chen G., Liu C., Gao Z., Zhang Y., Jiang H., Zhu L., Ren D., Yu L., Xu G., Qian Q.	<i>OsHAK1</i>, a High-Affinity Potassium Transporter, Positively Regulates Responses to Drought Stress in Rice.	Front Plant Sci	8	1885	2017		
45240	29190814	Bindusree G., Natarajan P., Kalva S., Madasamy P.	Whole genome sequencing of Oryza sativa L. cv. Seeragasamba identifies a new fragrance allele in rice.	PLoS ONE	12(11)	e0188920	2017		
45241	29164348	Singh C., K V S., S P JK., K BN., Pal G., K UB., K V R., G S.	Delineation of Inheritance Pattern of aleurone layer Colour Through Chemical Tests in Rice.	Rice (N Y)	10(1)	48	2017		
45242	29177846	Li X., Wang Y., Duan E., Qi Q., Zhou K., Lin Q., Wang D., Wang Y., Long W., Zhao Z., Cheng Z., Lei C., Zhang X., Guo X., Wang J., Wu C., Jiang L., Wang C., Wan J.	OPEN GLUME1: a key enzyme reducing the precursor of JA, participates in carbohydrate transport of lodicules during anthesis in rice.	Plant Cell Rep.	37(2)	329-346	2018	SWEET15,HPPD,SWEET5,KAT1,SWEET4,OG1,XA41,XA13	OsSWEET15,OsHPPD, Osl30, l30,OsSWEET5,OsI57, I57, OsKAT1, OsACAA1, ACAA1,OsSWEET4,OsOPR7, OPR7, OsOPR13, OsOPR3, OsOPR5, OsOPR9, OsOPR08-1,  OPR13, OPR3, OPR5, OPR9, OPR08-1, OsOPR8, OPR8,OsSWEET14, SWEET14, Os11N3, Os-11N3, 11N3, Xa41(t), xa41, Os11N3/SWEET14, OsSWEET14/Os11N3,xa13, Xa13, Os8N3, Os-8N3, 8N3, OsSWEET11, SWEET11, OsSWEET11/Xa13, Xa13/Os8N3/SWEET11, Os8N3/Xa13, OsSWEET11/Os8N3, OsSWEET11a, SWEET11a
45243	29268705	Wang Y., Pang C., Li X., Hu Z., Lv Z., Zheng B., Chen P.	Identification of tRNA nucleoside modification genes critical for stress response and development in rice and Arabidopsis.	BMC Plant Biol.	17(1)	261	2017		
45244	29297308	Vavilova V., Konopatskaia I., Kuznetsova A.E., Blinov A., Goncharov N.P.	DEP1 gene in wheat species with normal, compactoid and compact spikes.	BMC Genet.	18(Suppl 1)	106	2017		
45245	29247278	Tang D., Wei F., Kashif M.H., Khan A., Li Z., Shi Q., Jia R., Xie H., Zhang L., Li B., Chen P., Zhou R.	Analysis of chloroplast differences in leaves of rice isonuclear alloplasmic lines.	Protoplasma	255(3)	863-871	2018		
45246	29197985	Wu J., Chen L., Shahid M.Q., Chen M., Dong Q., Li J., Xu X., Liu X.	Pervasive interactions of Sa and Sb loci cause high pollen sterility and abrupt changes in gene expression during meiosis that could be overcome by double neutral genes in autotetraploid rice.	Rice (N Y)	10(1)	49	2017	CRC1,DMC1A,MYB8,DPF,SA,SB,_,MEL1,WDA1,BHLH9,SDS,MIL2	OsCRC1,OsDMC1A, OsDmc1A, Dmc1A, DMC1, OsDMC1, RiLIM15A, OsRad51,OsMYB8, OsMYB305, MYB305, Os2R_MYB9, 2R_MYB9 ,OsbHLH025, bHLH025, bHLH25,Sa*, S-a, Hst16,Sb*, S-b, Hst17, S24, F5-Du,OsbHLH113, bHLH113,mel1, OsMEL1, MEAL1, OsMEAL1, OsAGO5c ,OsWDA1, Wda1, wda1, OS-CER1, OsGL1-5,OsbHLH009, bHLH009, OsMYC2, MYC2,OsSDS, Orysa;SDS,OsTDL1A, TDL1A, OsMIL2, OsTDL1A/MIL2, OsTDL1a 
45247	29259968	Kulkarni M., Soolanayakanahally R., Ogawa S., Uga Y., Selvaraj M.G., Kagale S.	Drought Response in Wheat: Key Genes and Regulatory Mechanisms Controlling Root System Architecture and Transpiration Efficiency.	Front Chem	5	106	2017		
45248	29244864	Nemchinov L.G., Shao J., Lee M.N., Postnikova O.A., Samac D.A.	Resistant and susceptible responses in alfalfa (Medicago sativa) to bacterial stem blight caused by Pseudomonas syringae pv. syringae.	PLoS ONE	12(12)	e0189781	2017		
45249	29279818	Ghosh P., Roychoudhury A.	Differential levels of metabolites and enzymes related to aroma formation in aromatic indica rice varieties: comparison with non-aromatic varieties.	3 Biotech	8(1)	25	2018		
45250	29223068	Alam N.B., Ghosh A.	Comprehensive analysis and transcript profiling of Arabidopsis thaliana and Oryza sativa Catalase gene family suggests their specific roles in development and stress responses.	Plant Physiol. Biochem.	123	54-64	2018		
45251	29213298	Chiong K.T., Damaj M.B., Padilla C.S., Avila C.A., Pant S.R., Mandadi K.K., Ramos N.R., Carvalho D.V., Mirkov T.E.	Reproducible genomic DNA preparation from diverse crop species for molecular genetic applications.	Plant Methods	13	106	2017		
45252	29312925	Mittal S., Mallikarjuna M.G., Rao A.R., Jain P.A., Dash P.K., Thirunavukkarasu N.	Comparative Analysis of CDPK Family in Maize, <i>Arabidopsis</i>, Rice, and Sorghum Revealed Potential Targets for drought tolerance Improvement.	Front Chem	5	115	2017		
45253	29254884	Baliyan N., Malik R., Rani R., Mehta K., Vashisth U., Dhillon S., Boora K.S.	Integrating marker-assisted background analysis with foreground selection for pyramiding bacterial blight resistance genes into Basmati rice.	C. R. Biol.	341(1)	1-8	2018		
45254	29240945	Ting M.K.Y., She Y.M., Plaxton W.C.	Transcript profiling indicates a widespread role for bacterial-type phosphoenolpyruvate carboxylase in malate-accumulating sink tissues.	J. Exp. Bot.	68(21-22)	5857-5869	2017	PPPCB	Osppc-b, OsSTA1, ppc-b, STA1, BTPC, OsBTPC
45255	29291150	Kumari M., Devanna B.N., Singh P.K., Rajashekara H., Sharma V., Sharma T.R.	Stacking of blast resistance orthologue genes in susceptible indica rice line improves resistance against <i>Magnaporthe oryzae</i>.	3 Biotech	8(1)	37	2018		
45256	29282604	Zou T., Xiao Q., Li W., Luo T., Yuan G., He Z., Liu M., Li Q., Xu P., Zhu J., Liang Y., Deng Q., Wang S., Zheng A., Wang L., Li P., Li S.	OsLAP6/OsPKS1, an orthologue of Arabidopsis PKSA/LAP6, is critical for proper pollen exine formation.	Rice (N Y)	10(1)	53	2017	LAP6	OsPKS1, PKS1, YY2, OsPKS21, PKS21, OsLAP6/OsPKS1, OsLAP6, OsCHS22, CHS22
45257	29218376	Tang X., Gong R., Sun W., Zhang C., Yu S.	Genetic dissection and validation of candidate genes for flag leaf size in rice (Oryza sativa L.).	Theor. Appl. Genet.	131(4)	801-815	2018		
45258	29214636	Lin W.Y., Lin Y.Y., Chiang S.F., Syu C., Hsieh L.C., Chiou T.J.	Evolution of microRNA827 targeting in the plant kingdom.	New Phytol.	217(4)	1712-1725	2018		
45259	29136323	Ikawa H., Chen C.P., Sikma M., Yoshimoto M., Sakai H., Tokida T., Usui Y., Nakamura H., Ono K., Maruyama A., Watanabe T., Kuwagata T., Hasegawa T.	Increasing canopy photosynthesis in rice can be achieved without a large increase in water use-A model based on free-air CO2 enrichment.	Glob Chang Biol	24(3)	1321-1341	2018		
45260	29243204	Anand G., Yadav S., Tanveer A., Nasim J., Singh N.K., Dubey A.K., Yadav D.	Genome-Wide Assessment of Polygalacturonases-Like (PGL) Genes of Medicago truncatula, Sorghum bicolor, Vitis vinifera and Oryza sativa Using Comparative Genomics Approach.	Interdiscip Sci			2017	PGL9,PGL27,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,PGL3,_,_,_,_,PGL29,_,_,_,_,_,PSL1	OsPGL9,OsPGL27,OsPGL28, PGL28,OsPGL16, PGL16,OsPGL22, PGL22,OsPGL1, PGL1,OsPGL17, PGL17,OsPGL6, PGL6,OsPGL21, PGL21,OsPGL15, PGL15,OsPGL35, PGL35,OsPGL24, PGL24,OsPGL2, PGL2,OsPGL31, PGL31,OsPGL20, PGL20,OsPGL11, PGL11,OsPGL32, PGL32,OsPGL18, PGL18,OsPGL33, PGL33,OsPGL30, PGL30,OsPGL4, PGL4,OsPGL5, PGL5,OsPGL34, PGL34,OsPGL3, OsPG2, PG2,OsPGL26, PGL26,OsPGL19, PGL19,OsPGL25, PGL25,OsPGL12, PGL12,OsPGL29, OsPG1, PG1,OsPGL7, PGL7,OsPGL14, PGL14,OsPGL8, PGL8,OsPGL23, PGL23,OsPGL10, PGL10,OsPGL13, PGL13, OsPSL1, OsPG1, PG1, LTN-212
45261	29036354	Singh U., Khemka N., Rajkumar M.S., Garg R., Jain M.	PLncPRO for prediction of long non-coding RNAs (lncRNAs) in plants and its application for discovery of abiotic stress-responsive lncRNAs in rice and chickpea.	Nucleic Acids Res.	45(22)	e183	2017		
45262	29362095	Qiu Z., Kang S., He L., Zhao J., Zhang S., Hu J., Zeng D., Zhang G., Dong G., Gao Z., Ren D., Chen G., Guo L., Qian Q., Zhu L.	The newly identified heat-stress sensitive albino 1 gene affects chloroplast development in rice.	Plant Sci.	267	168-179	2018		
45263	29312409	Sun H., Feng F., Liu J., Zhao Q.	The Interaction between Auxin and Nitric Oxide Regulates Root Growth in Response to Iron Deficiency in Rice.	Front Plant Sci	8	2169	2017		
45264	29272715	Tang Z., Fan F., Wang X., Shi X., Deng S., Wang D.	Mercury in rice (Oryza sativa L.) and rice-paddy soils under long-term fertilizer and organic amendment.	Ecotoxicol. Environ. Saf.	150	116-122	2018		
45265	29253619	Liu C., Zheng S., Gui J., Fu C., Yu H., Song D., Shen J., Qin P., Liu X., Han B., Yang Y., Li L.	Shortened Basal Internodes Encodes a Gibberellin 2-Oxidase and Contributes to Lodging Resistance in Rice.	Mol Plant	11(2)	288-299	2018	SBI,GA2OX11	GA2OX4, OsGA2ox4, ga2ox 4, OsGA2ox-4, OsSBI,OsGA2ox11, 2-ODD31, Os2-ODD31, 2ODD31, Os2ODD31
45266	29281725	Wu B., Hu W., Ayaad M., Liu H., Xing Y.	Intragenic recombination between two non-functional semi-dwarf 1 alleles produced a functional SD1 allele in a tall recombinant inbred line in rice.	PLoS ONE	12(12)	e0190116	2017		
45267	29222476	Zhou W., Lv T., Yang Z., Wang T., Fu Y., Chen Y., Hu B., Ren W.	Morphophysiological mechanism of rice yield increase in response to optimized nitrogen management.	Sci Rep	7(1)	17226	2017		
45268	29242378	Wada S., Yamamoto H., Suzuki Y., Yamori W., Shikanai T., Makino A.	Flavodiiron Protein Substitutes for Cyclic Electron Flow without Competing CO2 Assimilation in Rice.	Plant Physiol.	176(2)	1509-1518	2018		
45269	29069481	Liu Y., Wang K., Li D., Yan J., Zhang W.	Enhanced cold tolerance and Tillering in Switchgrass (Panicum virgatum L.) by Heterologous Expression of Osa-miR393a.	Plant Cell Physiol.	58(12)	2226-2240	2017		
45270	29281971	Kajal M., Singh K.	Small RNA profiling for identification of miRNAs involved in regulation of saponins biosynthesis in Chlorophytum borivilianum.	BMC Plant Biol.	17(1)	265	2017		
45271	29222496	Wang X., Pang Y., Zhang J., Wu Z., Chen K., Ali J., Ye G., Xu J., Li Z.	Genome-wide and gene-based association mapping for rice eating and cooking characteristics and protein content.	Sci Rep	7(1)	17203	2017		
45272	29202710	Parvathaneni R.K., DeLeo V.L., Spiekerman J.J., Chakraborty D., Devos K.M.	Parallel loss of introns in the ABCB1 gene in angiosperms.	BMC Evol. Biol.	17(1)	238	2017		
45273	29269937	Hosojima M., Shimada H., Obi Y., Kuwahara S., Kaseda R., Kabasawa H., Kondo H., Fujii M., Watanabe R., Suzuki Y., Kadowaki M., Miyazaki S., Saito A.	A Randomized, Double-Blind, Crossover Pilot Trial of rice endosperm protein Supplementation in Maintenance Hemodialysis Patients.	Sci Rep	7(1)	18003	2017		
45274	29240818	Zhang X., Sun C., Zhang Z., Dai Z., Chen Y., Yuan X., Yuan Z., Tang W., Li L., Hu Z.	Genetic dissection of main and epistatic effects of QTL based on augmented triple test cross design.	PLoS ONE	12(12)	e0189054	2017		
45275	29186512	Wang Y., Liu L., Song S., Li Y., Shen L., Yu H.	DOFT and DOFTIP1 affect reproductive development in the orchid Dendrobium Chao Praya Smile.	J. Exp. Bot.	68(21-22)	5759-5772	2017		
45276	29225351	Wei J., Wang A., Li R., Qu H., Jia Z.	Metabolome-wide association studies for agronomic traits of rice.	Heredity	120(4)	342-355	2018		
45277	29040767	Kusumi K., Hashimura A., Yamamoto Y., Negi J., Iba K.	Contribution of the S-type Anion Channel SLAC1 to Stomatal Control and Its Dependence on Developmental Stage in Rice.	Plant Cell Physiol.	58(12)	2085-2094	2017		
45278	29199124	Huo W.K., Liu M.Q., Weng X.Y., Qi Y.P.	recombinant rice xylanase inhibitor (RIXI) expressed in Escherichia coli and its inhibitory activity on family GH11endo-xylanases.	Int. J. Biol. Macromol.			2017		
45279	29282566	Wang Y., Jiang W., Liu H., Zeng Y., Du B., Zhu L., He G., Chen R.	Marker assisted pyramiding of Bph6 and Bph9 into elite restorer line 93-11 and development of functional marker for Bph9.	Rice (N Y)	10(1)	51	2017	BPH6,BPH9	Bph6, OsBPH6,Bph9, BPH9/26, Bph26(t), BPH26, Bph18(t), BPH18
45280	29217592	Wu D., Liang W., Zhu W., Chen M., Ferr?ndiz C., Burton R.A., Dreni L., Zhang D.	Loss of LOFSEP Transcription Factor Function Converts Spikelet to Leaf-Like Structures in Rice.	Plant Physiol.	176(2)	1646-1664	2018		
45281	29696889	Cao N., Chen X.R., He H.H., Zhu C.L., Cai S., Xu T., Xie H.W., Liu F.P.	[Effects of different irrigation treatments during heading and flowering stage on cold resis-tance, yield and physiological characteristics of late rice].	Ying Yong Sheng Tai Xue Bao	28(12)	3935-3944	2017		
45282	29270189	Nakata M., Fukamatsu Y., Miyashita T., Hakata M., Kimura R., Nakata Y., Kuroda M., Yamaguchi T., Yamakawa H.	High Temperature-Induced Expression of Rice alpha-Amylases in Developing Endosperm Produces Chalky Grains.	Front Plant Sci	8	2089	2017		
45283	29242375	Lin C., Sauter M.	Control of Adventitious Root Architecture in Rice by Darkness, Light, and Gravity.	Plant Physiol.	176(2)	1352-1364	2018		
45284	29321899	Yang L., Li P., Li F., Ali S., Sun X., Hou M.	Silicon amendment to rice plants contributes to reduced feeding in a phloem-sucking insect through modulation of callose deposition.	Ecol Evol	8(1)	631-637	2018		
45285	29312380	Dang X., Fang B., Chen X., Li D., Sowadan O., Dong Z., Liu E., She D., Wu G., Liang Y., Hong D.	Favorable Marker Alleles for panicle exsertion Length in Rice (<i>Oryza sativa</i> L.) Mined by Association Mapping and the RSTEP-LRT Method.	Front Plant Sci	8	2112	2017		
45286	29253814	Faseela P., Puthur J.T.	The imprints of the high light and UV-B stresses in Oryza sativa L. 'Kanchana' seedlings are differentially modulated.	J. Photochem. Photobiol. B, Biol.	178	551-559	2018		
45287	29196814	Ghosh S., Kanwar P., Jha G.	Identification of candidate pathogenicity determinants of Rhizoctonia solani AG1-IA, which causes sheath blight disease in rice.	Curr. Genet.	64(3)	729-740	2018		
45288	29203347	Oh I.K., Bae I.Y., Lee H.G.	Effect of dry heat treatment on physical property and in vitro starch digestibility of High amylose rice starch.	Int. J. Biol. Macromol.	108	568-575	2018		
45289	29892844	Kang Y.J., Shim K.C., Lee H.S., Jeon Y.A., Kim S.H., Kang J.W., Yun Y.T., Park I.K., Ahn S.N.	Fine mapping and candidate gene analysis of the quantitative trait locus gw8.1 associated with grain length in rice.	Genes Genomics	40(4)	389-397	2018		
45290	29228906	Sarma S., Lodha M.	Phylogenetic relationship and domain organisation of SET domain proteins of Archaeplastida.	BMC Plant Biol.	17(1)	238	2017		
45291	29287760	Ke W., Cheng X., Cao D., Sun Q., Zhang Q.	Molluscicidal activity of Arisaema erubescens mixed with fertilizers against Oncomelania hupensis and its effect on rice germination and growth.	Acta Trop.	179	55-60	2018		
45292	29160592	Bezrutczyk M., Yang J., Eom J.S., Prior M., Sosso D., Hartwig T., Szurek B., Oliva R., Vera-Cruz C., White F.F., Yang B., Frommer W.B.	Sugar flux and signaling in plant-microbe interactions.	Plant J.	93(4)	675-685	2018		
45293	29238077	Mathew B., L?on J., Sillanp?? MJ.	A novel linkage-disequilibrium corrected genomic relationship matrix for SNP-heritability estimation and genomic prediction.	Heredity	120(4)	356-368	2018		
45294	29255474	Chen B.X., Li W.Y., Gao Y.T., Chen Z.J., Zhang W.N., Liu Q.J., Chen Z.	Corrigendum: Involvement of Polyamine Oxidase-Produced Hydrogen Peroxide during Coleorhiza-Limited Germination of Rice Seeds.	Front Plant Sci	8	2159	2017		
45295	29312386	Zhou Q., Zhang Z., Liu T., Gao B., Xiong X.	Identification and Map-Based Cloning of the Light-Induced Lesion Mimic Mutant 1 (<i>LIL1</i>) Gene in Rice.	Front Plant Sci	8	2122	2017	POX3006,POX22.3,PR10A,LIL1,PR1B	POX3006, prx114, Osprx114, PO-C1, POC-1, POC1, OsPOC1, Prx14, OsPrx14, POD3006, OsPOD3006,POX22.3, OSPER, OsPOX, POX, Pir3, prx111, POX22, OsPOX1, POX1, OsPOX22.3, OsPR9, PR9,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1, OsPR1a, PR1a
45296	29458719	Jirakkakul J., Roytrakul S., Srisuksam C., Swangmaneecharern P., Kittisenachai S., Jaresitthikunchai J., Punya J., Prommeenate P., Senachak J., So L., Tachaleat A., Tanticharoen M., Cheevadhanarak S., Wattanachaisaereekul S., Amnuaykanjanasin A.	Culture degeneration in conidia of Beauveria bassiana and virulence determinants by proteomics.	Fungal Biol	122(2-3)	156-171			
45297	29312420	Chen L., An Y., Li Y.X., Li C., Shi Y., Song Y., Zhang D., Wang T., Li Y.	Candidate Loci for Yield-Related Traits in Maize Revealed by a Combination of MetaQTL Analysis and Regional Association Mapping.	Front Plant Sci	8	2190	2017		
45298	29247303	Bettembourg M., Dal-Soglio M., Bureau C., Vernet A., Dardoux A., Portefaix M., Bes M., Meynard D., Mieulet D., Cayrol B., Perin C., Courtois B., Ma J.F., Dievart A.	Root cone angle is enlarged in DOCS1 LRR-RLK mutants in rice.	Rice (N Y)	10(1)	50	2017		
45299	29257136	Nie S.J., Liu Y.Q., Wang C.C., Gao S.W., Xu T.T., Liu Q., Chang H.L., Chen Y.B., Yan P.C., Peng W., Zheng T.Q., Xu J.L., Li Z.K.	Assembly of an early-matured japonica (Geng) rice genome, Suijing18, based on PacBio and Illumina sequencing.	Sci Data	4	170195	2017		
45300	29216292	Wu X.H., Wang W., Yin C.M., Hou H.J., Xie K.J., Xie X.L.	Water consumption, grain yield, and water productivity in response to field water management in double rice systems in China.	PLoS ONE	12(12)	e0189280	2017		
45301	29199103	Kaczmarzyk D., Cengic I., Yao L., Hudson E.P.	Diversion of the long-chain acyl-ACP pool in Synechocystis to fatty alcohols through CRISPRi repression of the essential phosphate acyltransferase PlsX.	Metab. Eng.	45	59-66	2018		
45302	29235492	Meng X., Xing S., Perez L.M., Peng X., Zhao Q., Redo?a ED., Wang C., Peng Z.	Proteome-wide Analysis of lysine 2-hydroxyisobutyrylation in Developing Rice (Oryza sativa) Seeds.	Sci Rep	7(1)	17486	2017		
45303	29148143	Tufail A., Li H., Naeem A., Li T.X.	Leaf cell membrane stability-based mechanisms of zinc nutrition in mitigating salinity stress in rice.	Plant Biol (Stuttg)	20(2)	338-345	2018		
45304	29326750	Jia B., Zhu X.F., Pu Z.J., Duan Y.X., Hao L.J., Zhang J., Chen L.Q., Jeon C.O., Xuan Y.H.	Integrative View of the Diversity and Evolution of SWEET and SemiSWEET Sugar Transporters.	Front Plant Sci	8	2178	2017		
45305	29285711	Meng X., Hu X., Liu Q., Song X., Gao C., Li J., Wang K.	Robust genome editing of CRISPR-Cas9 at NAG PAMs in rice.	Sci China Life Sci	61(1)	122-125	2018		
45306	29276952	Fu H., Yu H., Li T., Zhang X.	Influence of cadmium stress on root exudates of high cadmium accumulating rice line (Oryza sativa L.).	Ecotoxicol. Environ. Saf.	150	168-175	2018		
45307	29235343	Choi J.H., Wu J., Sawada A., Takeda S., Takemura H., Yogosawa K., Hirai H., Kondo M., Sugimoto K., Asakawa T., Inai M., Kan T., Kawagishi H.	N-Glucosides of Fairy Chemicals, 2-Azahypoxanthine and 2-Aza-8-oxohypoxanthine, in Rice.	Org. Lett.	20(1)	312-314	2018		
45308	29313810	Meng X., Lv Y., Mujahid H., Edelmann M.J., Zhao H., Peng X., Peng Z.	Proteome-wide lysine acetylation identification in developing rice (Oryza sativa) seeds and protein co-modification by acetylation, succinylation, ubiquitination, and phosphorylation.	Biochim. Biophys. Acta	1866(3)	451-463	2018		
45309	29230584	Ji H., Kim T.H., Lee G.S., Kang H.J., Lee S.B., Suh S.C., Kim S.L., Choi I., Baek J., Kim K.H.	Mapping of a major quantitative trait locus for bakanae disease resistance in rice by genome resequencing.	Mol. Genet. Genomics	293(3)	579-586	2018		
45310	29211972	Punjee P., Siripornadulsil W., Siripornadulsil S.	Reduction of cadmium uptake in rice endophytically colonized with the cadmium-tolerant bacterium Cupriavidus taiwanensis KKU2500-3.	Can. J. Microbiol.	64(2)	131-145	2018		
45311	29394277	Neeraja C.N., Kulkarni K.S., Madhu Babu P., Sanjeeva Rao D., Surekha K., Ravindra Babu V.	Transporter genes identified in landraces associated with high zinc in polished rice through panicle transcriptome for biofortification.	PLoS ONE	13(2)	e0192362	2018		
45312	29430376	Oh J.H., Lee Y.J., Byeon E.J., Kang B.C., Kyeoung D.S., Kim C.K.	Whole-genome resequencing and transcriptomic analysis of genes regulating anthocyanin biosynthesis in black rice plants.	3 Biotech	8(2)	115	2018		
45313	29467406	Wang Q., Nian J., Xie X., Yu H., Zhang J., Bai J., Dong G., Hu J., Bai B., Chen L., Xie Q., Feng J., Yang X., Peng J., Chen F., Qian Q., Li J., Zuo J.	Genetic variations in ARE1 mediate grain yield by modulating nitrogen utilization in rice.	Nat Commun	9(1)	735	2018	ABC1,ARE1	OsABC1, SPL32, OsSPL32, OsGLU, OsFd-GOGAT, Fd-GOGAT, ABC1/ OsFd-GOGAT ,OsARE1
45314	29406604	Bossa-Castro AM., Tekete C., Raghavan C., Delorean E.E., Dereeper A., Dagno K., Koita O., Mosquera G., Leung H., Verdier V., Leach J.E.	Allelic variation for broad-spectrum resistance and susceptibility to bacterial pathogens identified in a rice MAGIC population.	Plant Biotechnol. J.			2018		
45315	29785398	Singh V.K., Singh B.D., Kumar A., Maurya S., Krishnan S.G., Vinod K.K., Singh M.P., Ellur R.K., Bhowmick P.K., Singh A.K.	Marker-Assisted Introgression of <i>Saltol</i> QTL Enhances Seedling Stage salt tolerance in the Rice Variety "Pusa Basmati 1".	International Journal of Genomics	2018	8319879	2018		
45316	28990483	H?brard E., Pinel-Galzi A., Oludare A., Poulicard N., Aribi J., Fabre S., Issaka S., Mariac C., Dereeper A., Albar L., Silu? D., Fargette D.	Identification of a Hypervirulent Pathotype of Rice yellow mottle virus: A Threat to Genetic Resistance Deployment in West-Central Africa.	Phytopathology	108(2)	299-307	2018		
45317	29440319	Li C.L., Yang W.Z., Shi Z., Yuan H.S.	Tudor staphylococcal nuclease is a structure-specific ribonuclease that degrades RNA at unstructured regions during microRNA decay.	RNA	24(5)	739-748	2018		
45318	29692082	Lu Y.Q., Dai Y., Yu X.Y., Yu F.L., Jiang S.L., Zhou Z.Y., Chen F.J.	[Double-ambient CO2 concentration affects the growth, development and sucking behavior of non-target brown plant hopper Nilaparvata lugens fed on transgenic Bt rice.]	Ying Yong Sheng Tai Xue Bao	29(2)	651-658	2018		
45319	29467788	Yang Y., Zhang B., Zhou X., Romeis J., Peng Y., Li Y.	Toxicological and Biochemical Analyses Demonstrate the Absence of Lethal or Sublethal Effects of <i>Cry1C-</i> or <i>Cry2A</i>-Expressing <i>Bt</i> Rice on the Collembolan <i>Folsomia candida</i>.	Front Plant Sci	9	131	2018		
45320	29455311	Mi J., Yang D., Chen Y., Jiang J., Mou H., Huang J., Ouyang Y., Mou T.	Accelerated molecular breeding of a novel P/TGMS line with broad-spectrum resistance to rice blast and bacterial blight in two-line hybrid rice.	Rice (N Y)	11(1)	11	2018		
45321	29279303	Kitomi Y., Nakao E., Kawai S., Kanno N., Ando T., Fukuoka S., Irie K., Uga Y.	Fine Mapping of <i>QUICK ROOTING 1</i> and <i>2</i>, Quantitative Trait Loci Increasing root length in Rice.	G3 (Bethesda)	8(2)	727-735	2018		
45322	29126199	Choi J.Y., Purugganan M.D.	Evolutionary Epigenomics of Retrotransposon-Mediated Methylation Spreading in Rice.	Mol. Biol. Evol.	35(2)	365-382	2018		
45323	29892951	Gao Q., Xu S., Zhu X., Wang L., Yang Z., Zhao X.	Genome-wide identification and characterization of the RIO atypical kinase family in plants.	Genes Genomics	40(6)	669-683	2018		
45324	29417232	Xiang D.J., Man L.L., Zhang C.L., Peng-Liu, Li Z.G., Zheng G.C.	A new <Em class="new_gene">Em-like protein</Em> from Lactuca sativa, <Em class="new_gene">LsEm1</Em>, enhances drought and salt stress tolerance in Escherichia coli and rice.	Protoplasma	255(4)	1089-1106	2018		
45325	29393991	Feng Z., Uddling J., Tang H., Zhu J., Kobayashi K.	Comparison of crop yield sensitivity to ozone between open-top chamber and free-air experiments.	Glob Chang Biol	24(6)	2231-2238	2018		
45326	29495297	Zhu S., Ji Y., Ji J., Bie T., Gao A., He H.	Fine Physical Bin Mapping of the Powdery Mildew Resistance Gene <i>Pm21</i> Based on Chromosomal Structural Variations in Wheat.	Int J Mol Sci	19(2)		2018		
45327	29449858	Wang G., Xiao Y., Deng X., Zhang H., Li T., Chen H.	Exogenous Hydrogen Peroxide Contributes to Heme Oxygenase-1 Delaying Programmed Cell Death in Isolated Aleurone Layers of Rice Subjected to Drought Stress in a cGMP-Dependent Manner.	Front Plant Sci	9	84	2018		
45328	29336033	Chen H., Zhang Q., Cai H., Zhou W., Xu F.	H2 O2 mediates nitrate-induced iron chlorosis by regulating iron homeostasis in rice.	Plant Cell Environ.	41(4)	767-781	2018		
45329	29304198	Yamatani H., Kohzuma K., Nakano M., Takami T., Kato Y., Hayashi Y., Monden Y., Okumoto Y., Abe T., Kumamaru T., Tanaka A., Sakamoto W., Kusaba M.	Impairment of Lhca4, a subunit of LHCI, causes high accumulation of chlorophyll and the stay-green phenotype in rice.	J. Exp. Bot.	69(5)	1027-1035	2018	DYE1,CAB2R,CAB1R	cab, cab-n8, Lhca4, OsLhca4,Oscab2R, CAB-2, OsLhcp, Lhcb1, Lhcb1a, OsLhcb1, OsLhcb1a ,cab1R, LHCP, CAB, OsLhcb1, Lhcb1, Cab1, OsCAB1, Lhcb1b, OsLhcb1b, CAB2R
45330	29391460	Subudhi P.K., De Leon TB., Tapia R., Chai C., Karan R., Ontoy J., Singh P.K.	Genetic interaction involving photoperiod-responsive Hd1 promotes early flowering under long-day conditions in rice.	Sci Rep	8(1)	2081	2018		
45331	29409859	Deng H., Cheema J., Zhang H., Woolfenden H., Norris M., Liu Z., Liu Q., Yang X., Yang M., Deng X., Cao X., Ding Y.	Rice In?Vivo RNA Structurome Reveals RNA Secondary Structure Conservation and Divergence in Plants.	Mol Plant	11(4)	607-622	2018		
45332	29473711	Jiang P., Wang S., Ikram A.U., Xu Z., Jiang H., Cheng B., Ding Y.	SDG721 and SDG705 are required for rice growth.	J Integr Plant Biol			2018		
45333	29440679	Luo J.S., Huang J., Zeng D.L., Peng J.S., Zhang G.B., Ma H.L., Guan Y., Yi H.Y., Fu Y.L., Han B., Lin H.X., Qian Q., Gong J.M.	A defensin-like protein drives cadmium efflux and allocation in rice.	Nat Commun	9(1)	645	2018	CAL1	OsCPT1, CPT1, DEFL7, OsDEFL7, OsDf-07, Df-07, OsPR12, PR12, DEF7, OsDEF7, OsAFP1, AFP1, OsPDF2.2, PDF2.2
45334	29411865	Corbin J.M., Kailemia M.J., Cadieux C.L., Alkanaimsh S., Karuppanan K., Rodriguez R.L., Lebrilla C.B., Cerasoli D.M., McDonald K.A., Nandi S.	Purification, characterization, and N-glycosylation of Recombinant butyrylcholinesterase from transgenic rice cell suspension cultures.	Biotechnol. Bioeng.	115(5)	1301-1310	2018		
45335	29216416	Ferrero-Serrano ?., Su Z., Assmann S.M.	Illuminating the role of the Galpha heterotrimeric G protein subunit, RGA1, in regulating photoprotection and photoavoidance in rice.	Plant Cell Environ.	41(2)	451-468	2018		
45336	29535747	Fang J., Nan P., Gu Z., Ge X., Feng Y.Q., Lu B.R.	Overexpressing Exogenous 5-enolpyruvylshikimate-3-phosphate synthase (EPSPS) Genes Increases Fecundity and Auxin Content of Transgenic Arabidopsis Plants.	Front Plant Sci	9	233	2018		
45337	29413631	Zhong C., Cao X., Bai Z., Zhang J., Zhu L., Huang J., Jin Q.	Nitrogen metabolism correlates with the acclimation of photosynthesis to short-term water stress in rice (Oryza sativa L.).	Plant Physiol. Biochem.	125	52-62	2018		
45338	29476225	Kumar K., Sarao P.S., Bhatia D., Neelam K., Kaur A., Mangat G.S., Brar D.S., Singh K.	High-resolution genetic mapping of a novel brown planthopper resistance locus, Bph34 in Oryza sativa L. X Oryza nivara (Sharma & Shastry) derived interspecific F2 population.	Theor. Appl. Genet.	131(5)	1163-1171	2018	BPH34	Bph34
45339	29576077	Whitcomb S.J., Nguyen H.C., Br?ckner F., Hesse H., Hoefgen R.	CYSTATHIONINE GAMMA-synthase activity in rice is developmentally regulated and strongly correlated with sulfate.	Plant Sci.	270	234-244	2018		
45340	29402905	Das G., Rao G.J.N., Varier M., Prakash A., Prasad D.	Improved Tapaswini having four BB resistance genes pyramided with six genes/QTLs, resistance/tolerance to biotic and abiotic stresses in rice.	Sci Rep	8(1)	2413	2018		
45341	29430353	Gumi A.M., Guha P.K., Mazumder A., Jayaswal P., Mondal T.K.	Characterization of <i>OglDREB2A</i> gene from African rice (<i>Oryza glaberrima</i>), comparative analysis and its transcriptional regulation under salinity stress.	3 Biotech	8(2)	91	2018		
45342	29395084	Park J.H., Jung S.	Perturbations in carotenoid and porphyrin status result in differential photooxidative stress signaling and antioxidant responses.	Biochem. Biophys. Res. Commun.	496(3)	840-845	2018		
45343	29432414	Ono S., Liu H., Tsuda K., Fukai E., Tanaka K., Sasaki T., Nonomura K.I.	EAT1 transcription factor, a non-cell-autonomous regulator of pollen production, activates meiotic small RNA biogenesis in rice anther tapetum.	PLoS Genet.	14(2)	e1007238	2018		
45344	29453050	Zhang Z., Cheng H., Chen H., Chen K., Lu X., Ouyang P., Fu J.	Enhancement in the aromatic yield from the catalytic fast pyrolysis of rice straw over hexadecyl trimethyl ammonium bromide modified hierarchical HZSM-5.	Bioresour. Technol.	256	241-246	2018		
45345	29412473	Tawaraya K., Honda S., Cheng W., Chuba M., Okazaki Y., Saito K., Oikawa A., Maruyama H., Wasaki J., Wagatsuma T.	Ancient rice cultivar extensively replaces phospholipids with non-phosphorus glycolipid under phosphorus deficiency.	Physiol Plant			2018		
45346	29440497	Lonhienne T., Garcia M.D., Pierens G., Mobli M., Nouwens A., Guddat L.W.	Structural insights into the mechanism of inhibition of AHAS by herbicides.	Proc. Natl. Acad. Sci. U.S.A.	115(9)	E1945-E1954	2018		
45347	29532023	Yoshimura M., Sato A., Kuwata K., Inukai Y., Kinoshita T., Itami K., Tsuchiya Y., Hagihara S.	Discovery of shoot branching Regulator Targeting strigolactone receptor DWARF14.	ACS Cent Sci	4(2)	230-234	2018		
45348	29427065	Zhang Y., Liu K., Zhu X., Wu Y., Zhang S., Chen H., Ling J., Wang Y., Fang X.	Rice tocopherol deficiency 1 encodes a homogentisate phytyltransferase essential for tocopherol biosynthesis and plant development in rice.	Plant Cell Rep.	37(5)	775-787	2018	DREB1B,SLR1,DREB1C,DREB1A,VTE2	OsDREB1B, ERF31, OsERF031, OsERF#031, OsERF31, AP2/EREBP#169, AP2/EREBP169, OsDREB1b, OsDREB1C, OsCBF1, CBF1,slr1-1, slr1, slr, GAI, OsGAI, OsSLR1, Os SLR1, OsRGA1, OsGRAS-18, OsGRAS-18, GRAS-18, GRAS18, SLR-1,OsDREB1C, CBF1, ERF26, OsERF026, OsERF#026, OsERF26, AP2/EREBP#098, AP2/EREBP98, OsCBF2, CBF2,OsDREB1A, Os DREB1A, CBF3, OsCBF3, OsDREB1A/OsCBF3, ERF24, OsERF24, OsERF024, OsERF#024, AP2/EREBP#114, AP2/EREBP114, OsDREBL,OsVTE2, SGD1, OsSGD1, RTD1, OsRTD1, OsHPT, HPT 
45349	29398646	Afrin W., Nafis M.H., Hossain M.A., Islam M.M., Hossain M.A.	Responses of rice (Oryza sativa L.) genotypes to different levels of submergence.	C. R. Biol.	341(2)	85-96	2018		
45350	29576076	Wang Y., Wang C., Liu Y., Yu K., Zhou Y.	GmHMA3 sequesters Cd to the root endoplasmic reticulum to limit translocation to the stems in soybean.	Plant Sci.	270	23-29	2018		
45351	29355926	Yaguchi M., Kozaki A.	Plant S6 kinases do not require hydrophobic motif phosphorylation for activity in yeast lacking Ypk3.	FEBS Lett.	592(4)	610-620	2018		
45352	29429010	Wei S., Cui H., Zhu Y., Lu Z., Pang S., Zhang S., Dong H., Su X.	Shifts of methanogenic communities in response to permafrost thaw results in rising methane emissions and soil property changes.	Extremophiles	22(3)	447-459	2018		
45353	29449862	Huang L., Wang Y., Wang W., Zhao X., Qin Q., Sun F., Hu F., Zhao Y., Li Z., Fu B., Li Z.	Characterization of Transcription Factor Gene <i>OsDRAP1</i> Conferring drought tolerance in Rice.	Front Plant Sci	9	94	2018		
45354	29391416	Wang J., Zhu J., Zhang Y., Fan F., Li W., Wang F., Zhong W., Wang C., Yang J.	Comparative transcriptome analysis reveals molecular response to salinity stress of salt-tolerant and sensitive genotypes of indica rice at seedling stage.	Sci Rep	8(1)	2085	2018		
45355	29576072	Luo L., Wang H., Liu X., Hu J., Zhu X., Pan S., Qin R., Wang Y., Zhao P., Fan X., Xu G.	Strigolactones affect the translocation of nitrogen in rice.	Plant Sci.	270	190-197	2018		
45356	29210524	Shi X., Chen S., Peng Y., Wang Y., Chen J., Hu Z., Wang B., Li A., Chao D., Li Y., Teng S.	TSC1 enables plastid development under dark conditions, contributing to rice adaptation to transplantation shock.	J Integr Plant Biol	60(2)	112-129	2018	NRAMP1,TSC1,NAS1,YSL2,IRT1,PIC1	OsNramp1, OsNRAMP1, OsNramp6,ABCI7, OsABCI7, OsABCI7_1, OsABCI7_2, OsABCI8, ABCI8, OsABCI8.1, OsABCI8.2, OsCNL1, CNL1, OsTSC1, TSC1.1, TSC1.2,OsNAS1,OsYSL2, Os-YSL2, OsYs6 ,OsIRT1, ZIP10, OsZIP10, OsZIP12, ZIP12,OsPIC1
45357	29487318	Sun S., Wang L., Mao H., Shao L., Li X., Xiao J., Ouyang Y., Zhang Q.	A G-protein pathway determines grain size.in rice.	Nat Commun	9(1)	851	2018	GGC2,RGB1,LK3,DEP1,D1	OsGGC2,OsWD40-80, RGbeta1, OsRGB1,  OsDWD38, DWD38,lk3(t), lk3(t)*, SG3, GS3, SG3-GS3, OsGW3, OsGS3, RGG3/GS3/Mi/OsGGC1, RGG3, Mi, OsGGC1, GGC1, OsSYL3, SYL3, TT2, OsTT2,OsDEP1, EP, qPE9-1, DN1, DEP1/DN1/qPE9-1, qNGR9, qDEP1, RGG4/DEP1/DN1/qPE9-1/OsGGC3, RGG4, OsDN1, OsGGC3, GGC3,d1, GPA1, GA1, OsGA1, RGA1, dwf1, XA7, RGA, D1/RGA1, D89, TGW5, OsTGW5, SRG5, OsSRG5
45358	29392476	Chen F., Dong G., Ma X., Wang F., Zhang Y., Xiong E., Wu J., Wang H., Qian Q., Wu L., Yu Y.	UMP kinase activity is involved in proper chloroplast development in rice.	Photosyn. Res.	137(1)	53-67	2018		
45359	29272531	Honda E., Yew C.L., Yoshikawa T., Sato Y., Hibara K.I., Itoh J.I.	LEAF LATERAL SYMMETRY1, a Member of the WUSCHEL-RELATED HOMEOBOX3 Gene Family, Regulates Lateral Organ Development Differentially from Other Paralogs, NARROW LEAF2 and NARROW LEAF3 in Rice.	Plant Cell Physiol.	59(2)	376-391	2018		
45360	29576065	Wu T.Y., Gruissem W., Bhullar N.K.	Facilitated citrate-dependent iron translocation increases rice endosperm iron and zinc concentrations.	Plant Sci.	270	13-22	2018		
45361	29489838	Ma N.L., Che Lah WA., Abd Kadir N., Mustaqim M., Rahmat Z., Ahmad A., Lam S.D., Ismail M.R.	Susceptibility and tolerance of rice crop to salt threat: Physiological and metabolic inspections.	PLoS ONE	13(2)	e0192732	2018		
45362	29478138	Tabkhkar N., Rabiei B., Samizadeh Lahiji H., Hosseini Chaleshtori M.	Genetic Variation and Association Analysis of the SSR Markers Linked to the Major Drought-Yield QTLs of Rice.	Biochem. Genet.			2018		
45363	29476918	Yan F., Kuang Y., Ren B., Wang J., Zhang D., Lin H., Yang B., Zhou X., Zhou H.	Highly Efficient AET to GEC Base Editing by Cas9n-Guided tRNA Adenosine Deaminase in Rice.	Mol Plant	11(4)	631-634	2018		
45364	29487275	Pasriga R., Cho L.H., Yoon J., An G.	Identification of the Regulatory Region Responsible for Vascular Tissue-Specific Expression in the Rice <i>Hd3a</i> Promoter.	Mol. Cells	41(4)	342-350	2018		
45365	29425206	Shrestha A., Dziwornu A.K., Ueda Y., Wu L.B., Mathew B., Frei M.	Genome-wide association study to identify candidate loci and genes for Mn toxicity tolerance in rice.	PLoS ONE	13(2)	e0192116	2018		
45366	29437777	Oszvald M., Primavesi L.F., Griffiths C.A., Cohn J., Basu S.S., Nuccio M.L., Paul M.J.	Trehalose 6-Phosphate Regulates Photosynthesis and Assimilate Partitioning in Reproductive Tissue.	Plant Physiol.	176(4)	2623-2638	2018		
45367	29446008	Omar A.A., Murata M.M., El-Shamy HA., Graham J.H., Grosser J.W.	Enhanced resistance to citrus canker in transgenic mandarin expressing Xa21 from rice.	Transgenic Res.	27(2)	179-191	2018		
45368	29427309	Tian J.C., Wang G.W., Han H.L., Romeis J., Zhang F.C., Ye G.Y., Xie M.C., Wang G.Y., Lu Z.X.	The rice planthopper parasitoid Anagrus nilaparvatae is not at risk when feeding on honeydew derived from Bacillus thuringiensis (Bt) rice.	Pest Manag. Sci.			2018		
45369	29407784	Moulick D., Santra S.C., Ghosh D.	Effect of selenium induced seed priming on arsenic accumulation in rice plant and subsequent transmission in human food chain.	Ecotoxicol. Environ. Saf.	152	67-77	2018		
45370	29479714	Yoneyama K., Mori N., Sato T., Yoda A., Xie X., Okamoto M., Iwanaga M., Ohnishi T., Nishiwaki H., Asami T., Yokota T., Akiyama K., Yoneyama K., Nomura T.	Conversion of carlactone to carlactonoic acid is a conserved function of MAX1 homologs in strigolactone biosynthesis.	New Phytol.	218(4)	1522-1533	2018	MAX1C,MAX1B,SLB1,MAX1D,SLB2	OsMAX1c, MAX1c, Os1500/CYP711A4, Os1500, CYP711A4, OsCYP711A4,OsMAX1b, MAX1b, Os5100/CYP711A6, Os5100, CYP711A6, Os/CYP711A6,OsSLB1, Os900/CYP711A2, Os900, CYP711A2, OsCYP711A2, OsCO, CO,OsMAX1D, Os1900/CYP711A5, Os1900, CYP711A5, OsCYP711A5,CYP711A1, OsCYP711A1, Os1400/CYP711A3, Os1400, CYP711A3, OsCYP711A3, OsMAX1-1400, MAX1-1400
45371	29475897	Minami A., Yano K., Gamuyao R., Nagai K., Kuroha T., Ayano M., Nakamori M., Koike M., Kondo Y., Niimi Y., Kuwata K., Suzuki T., Higashiyama T., Takebayashi Y., Kojima M., Sakakibara H., Toyoda A., Fujiyama A., Kurata N., Ashikari M., Reuscher S.	Time-Course Transcriptomics Analysis Reveals Key Responses of Submerged Deepwater Rice to Flooding.	Plant Physiol.	176(4)	3081-3102	2018		
45372	29479780	Deng F., Yamaji N., Ma J.F., Lee S.K., Jeon J.S., Martinoia E., Lee Y., Song W.Y.	Engineering rice with lower grain arsenic.	Plant Biotechnol. J.			2018		
45373	29476246	Chen P.F., Chen L., Jiang Z.R., Wang G.P., Wang S.H., Ding Y.F.	Sucrose is involved in the regulation of iron deficiency responses in rice (Oryza sativa L.).	Plant Cell Rep.	37(5)	789-798	2018		
45374	29453432	Jain N., Vergish S., Khurana J.P.	Validation of house-keeping genes for normalization of gene expression data during diurnal/circadian studies in rice by RT-qPCR.	Sci Rep	8(1)	3203	2018		
45375	29487612	Wang W., He A., Peng S., Huang J., Cui K., Nie L.	The Effect of Storage Condition and Duration on the Deterioration of Primed Rice Seeds.	Front Plant Sci	9	172	2018		
45376	29696893	Li Y.N., Lu L., Liu Y.	[Tasseled cap triangle (TCT)-leaf area index (LAI)model of rice fields based on PROSAIL model and its application].	Ying Yong Sheng Tai Xue Bao	28(12)	3976-3984	2017		
45377	29182721	Ronald P., Joe A.	Molecular mimicry modulates plant host responses to pathogens.	Ann. Bot.	121(1)	17-23	2018		
45378	29387899	Kadambari G., Vemireddy L.R., Srividhya A., Nagireddy R., Jena S.S., Gandikota M., Patil S., Veeraghattapu R., Deborah D.A.K., Reddy G.E., Shake M., Dasari A., Ramanarao P.V., Durgarani C.V., Neeraja C.N., Siddiq E.A., Sheshumadhav M.	QTL-Seq-based genetic analysis identifies a major genomic region governing dwarfness in rice (Oryza sativa L.).	Plant Cell Rep.	37(4)	677-687	2018	ASD1	IWS1, OsIWS1
45379	29376517	Cui Y., Liu Z., LI Y., Zhou F., Chen H., Lin Y.	Corrigendum: Application of a novel phosphinothricin N-acetyltransferase (RePAT) gene in developing glufosinate-resistant rice.	Sci Rep	8	46937	2018		
45380	29373562	Chen Y.S., Zaro J.L., Zhang D., Huang N., Simon A., Shen W.C.	Characterization and Oral Delivery of Proinsulin-Transferrin Fusion Protein Expressed Using ExpressTec.	Int J Mol Sci	19(2)		2018		
45381	29294038	Wagatsuma T., Maejima E., Watanabe T., Toyomasu T., Kuroda M., Muranaka T., Ohyama K., Ishikawa A., Usui M., Hossain Khan S., Maruyama H., Tawaraya K., Kobayashi Y., Koyama H.	Dark conditions enhance aluminum tolerance in several rice cultivars via multiple modulations of membrane sterols.	J. Exp. Bot.	69(3)	567-577	2018		
45382	29386629	Jaemsaeng R., Jantasuriyarat C., Thamchaipenet A.	Molecular interaction of 1-aminocyclopropane-1-carboxylate deaminase (ACCD)-producing endophytic Streptomyces sp. GMKU 336 towards salt-stress resistance of Oryza sativa L. cv. KDML105.	Sci Rep	8(1)	1950	2018		
45383	29340787	Xu W., Liu W., Ye R., Mazarei M., Huang D., Zhang X., Stewart C.N.	A profilin gene promoter from switchgrass (Panicum virgatum L.) directs strong and specific transgene expression to vascular bundles in rice.	Plant Cell Rep.	37(4)	587-597	2018		
45384	29373575	Waqas M., Shahzad R., Hamayun M., Asaf S., Khan A.L., Kang S.M., Yun S., Kim K.M., Lee I.J.	Biochar amendment changes jasmonic acid levels in two rice varieties and alters their resistance to herbivory.	PLoS ONE	13(1)	e0191296	2018		
45385	29330361	Mondal T.K., Panda A.K., Rawal H.C., Sharma T.R.	Discovery of microRNA-target modules of African rice (Oryza glaberrima) under salinity stress.	Sci Rep	8(1)	570	2018		
45386	29335439	Wu X., Wang W., Xie X., Yin C., Hou H., Yan W., Wang G.	Net global warming potential and greenhouse gas intensity as affected by different water management strategies in Chinese double rice-cropping systems.	Sci Rep	8(1)	779	2018		
45387	29110008	Li X., He Y., Xie C., Zu Y., Zhan F., Mei X., Xia Y., Li Y.	Effects of UV-B radiation on the infectivity of Magnaporthe oryzae and rice disease-resistant physiology in Yuanyang terraces.	Photochem. Photobiol. Sci.	17(1)	8-17	2018		
45388	29372429	Casartelli A., Riewe D., Hubberten H.M., Altmann T., Hoefgen R., Heuer S.	Exploring traditional aus-type rice for metabolites conferring drought tolerance.	Rice (N Y)	11(1)	9	2018		
45389	29368405	Li Z., Li L.K., Liu B., Wang L., Parajulee M.N., Chen F.J.	Effects of seed mixture sowing with transgenic Bt rice and its parental line on the population dynamics of target stemborers and leafrollers, and non-target planthoppers.	Insect Science			2018		
45390	29374240	Sandhu N., Dixit S., Swamy B.P.M., Vikram P., Venkateshwarlu C., Catolos M., Kumar A.	Positive interactions of major-effect QTLs with genetic background that enhances rice yield under drought.	Sci Rep	8(1)	1626	2018		
45391	29364524	Chen L., Zhao Y., Xu S., Zhang Z., Xu Y., Zhang J., Chong K.	OsMADS57 together with OsTB1 coordinates transcription of its target OsWRKY94 and D14 to switch its organogenesis to defense for cold adaptation in rice.	New Phytol.	218(1)	219-231	2018		
45392	29294052	Wang L., Guo M., Li Y., Ruan W., Mo X., Wu Z., Sturrock C.J., Yu H., Lu C., Peng J., Mao C.	LARGE ROOT ANGLE1, encoding OsPIN2, is involved in root system architecture in rice.	J. Exp. Bot.	69(3)	385-397	2018	LRA1	OsPIN2, PIN2, OsLRA1, WAR1, OsWAR1
45393	29344835	Morey S.R., Hirose T., Hashida Y., Miyao A., Hirochika H., Ohsugi R., Yamagishi J., Aoki N.	Genetic Evidence for the Role of a Rice Vacuolar Invertase as a Molecular Sink Strength Determinant.	Rice (N Y)	11(1)	6	2018		
45394	29387076	Quan R., Wang J., Hui J., Bai H., Lyu X., Zhu Y., Zhang H., Zhang Z., Li S., Huang R.	Improvement of salt tolerance Using Wild Rice Genes.	Front Plant Sci	8	2269	2017		
45395	29342190	Yang J., Du L., Gong W., Shi S., Sun J., Chen B.	Potential of vegetation indices combined with laser-induced fluorescence parameters for monitoring leaf nitrogen content in paddy rice.	PLoS ONE	13(1)	e0191068	2018		
45396	29382171	Katsumata S., Toshima H., Hasegawa M.	Xylosylated Detoxification of the Rice Flavonoid Phytoalexin Sakuranetin by the Rice Sheath Blight Fungus Rhizoctonia solani.	Molecules	23(2)		2018		
45397	29353448	Acevedo L.A., Nicholson L.K.	1H, 13C and 15N NMR assignments of cyclophilin LRT2 (OsCYP2) from rice.	Biomol NMR Assign	12(1)	171-174	2018		
45398	29286886	Tsunemitsu Y., Yamaji N., Ma J.F., Kato S.I., Iwasaki K., Ueno D.	Rice reduces Mn uptake in response to Mn stress.	Plant Signal Behav	13(1)	e1422466	2018	LCD1,MTP8,MTP9,MTP8.1	NRAMP5, OsNRAMP5, OsNramp5, OsLCD1,OsMTP8, MTP8.2, OsMTP8.2,OsMTP9,OsMTP8.1
45399	29356995	Singh V.K., Ellur R.K., Singh A.K., Nagarajan M., Singh B.D., Singh N.K.	Effect of qGN4.1 QTL for grain number per Panicle in Genetic Backgrounds of Twelve Different Mega Varieties of Rice.	Rice (N Y)	11(1)	8	2018		
45400	29375598	Vo K.T.X., Kim C.Y., Hoang T.V., Lee S.K., Shirsekar G., Seo Y.S., Lee S.W., Wang G.L., Jeon J.S.	OsWRKY67 Plays a Positive Role in Basal and XA21-Mediated Resistance in Rice.	Front Plant Sci	8	2220	2017		
45401	29334902	Gonzalez D.O., Church J.B., Robinson A., Connell J.P., Sopko M., Rowland B., Woodall K., Larsen C.M., Davies J.P.	Expression characterization of the herbicide tolerance gene Aryloxyalkanoate Dioxygenase (aad-1) controlled by seven combinations of regulatory elements.	BMC Plant Biol.	18(1)	14	2018		
45402	29363563	Yang Q.Q., Zhao D.S., Zhang C.Q., Wu H.Y., Li Q.F., Gu M.H., Sun S.S., Liu Q.Q.	A Connection between Lysine and Serotonin Metabolism in Rice Endosperm.	Plant Physiol.	176(3)	1965-1980	2018	_,TDC1,GAD1,_,LOX2,TDC3,TDC2,SL,CRO,DEFL13,ACX2	GDCi, OsGDCi, OsGAD, GAD, OsGAD4, GAD4,OsTDC, TDC, TDC2, OsTDC1, OsTDC4,OsGAD1, GDC,,OsLOX2, OsLOX6, LOX6,OsTDC3, OsTDC5,OsTDC2, OsTDC3,OsSL, sl (spl1), sl*, sl, spl1, CYP71P1, Os CYP71P1, T5H, OsT5H, CYP71A1, OsCYP71A1, OsLLM1, LLM1, LLM1/OsSL, ELL1, OsELL1, ELL1/SL, OsT5H1,OsCRO,OsEnS-108, EnS-108, DEFL, OsDEFL13,OsACX2
45403	29551212	Rais A., Shakeel M., Malik K., Hafeez F.Y., Yasmin H., Mumtaz S., Hassan M.N.	Antagonistic Bacillus spp. reduce blast incidence on rice and increase grain yield under field conditions.	Microbiol. Res.	208	54-62	2018		
45404	29382569	Ren B., Yan F., Kuang Y., Li N., Zhang D., Zhou X., Lin H., Zhou H.	Improved Base Editor for Efficiently Inducing Genetic Variations in Rice with CRISPR/Cas9-Guided Hyperactive hAID Mutant.	Mol Plant	11(4)	623-626	2018		
45405	29210506	Zhang J., Zhang H., Botella J.R., Zhu J.K.	Generation of new glutinous rice by CRISPR/Cas9-targeted mutagenesis of the Waxy gene in elite rice varieties.	J Integr Plant Biol	60(5)	369-375	2018		
45406	29337869	Ding L., Li Y., Gao L., Lu Z., Wang M., Ling N., Shen Q., Guo S.	Aquaporin Expression and Water Transport Pathways inside Leaves Are Affected by Nitrogen Supply through Transpiration in Rice Plants.	Int J Mol Sci	19(1)		2018		
45407	29373953	Zhang Q., Oh D.H., DiTusa S.F., RamanaRao MV., Baisakh N., Dassanayake M., Smith A.P.	Rice nucleosome patterns undergo remodeling coincident with stress-induced gene expression.	BMC Genomics	19(1)	97	2018		
45408	29331540	Gnesutta N., Mantovani R., Fornara F.	Plant Flowering: Imposing DNA Specificity on Histone-Fold Subunits.	Trends Plant Sci.	23(4)	293-301	2018		
45409	29304121	Ngangkham U., Samantaray S., Yadav M.K., Kumar A., Chidambaranathan P., Katara J.L.	Effect of multiple allelic combinations of genes on regulating grain size.in rice.	PLoS ONE	13(1)	e0190684	2018	GW8,DEP1,GS7,LK3,GS5,GW7,GW2	SPL16, OsSPL16, SLP1, OsSLP1, qGW8, OsGW8,OsDEP1, EP, qPE9-1, DN1, DEP1/DN1/qPE9-1, qNGR9, qDEP1, RGG4/DEP1/DN1/qPE9-1/OsGGC3, RGG4, OsDN1, OsGGC3, GGC3,,lk3(t), lk3(t)*, SG3, GS3, SG3-GS3, OsGW3, OsGS3, RGG3/GS3/Mi/OsGGC1, RGG3, Mi, OsGGC1, GGC1, OsSYL3, SYL3, TT2, OsTT2,OsSCP26, SCP26, OsGS5,GL7, OsGL7, OsGW7, qGW7, qGL7, SLG7, GL7/GW7/SLG7, qPY7, GL7/SLG7, Chalk7, OsChalk7,OsGW2, OsRING429, RING429, GNL44, OsGNL44
45410	29305728	Kim S.H., Kwon C.T., Song G., Koh H.J., An G., Paek N.C.	The rice zebra3 (Z3) mutation disrupts citrate distribution and produces transverse dark-green/green variegation in mature leaves.	Rice (N Y)	11(1)	1	2018	Z3	OsZ3, z3, SIET4, OsSIET4
45411	29298333	Zhang H., Liu S., Chen G., Liu X., Xuan N., Yang Y., Liu W., Ding H., Yao F.	Genetic dissection of QTLs and differentiation analysis of alleles for heading date genes in rice.	PLoS ONE	13(1)	e0190491	2018		
45412	29354099	Zhao C.Z., Huang J., Gyaneshwar P., Zhao D.	<i>Rhizobium</i> sp. IRBG74 Alters <i>Arabidopsis</i> Root Development by Affecting Auxin Signaling.	Front Microbiol	8	2556	2017		
45413	29298667	Batayeva D., Labaco B., Ye C., Li X., Usenbekov B., Rysbekova A., Dyuskalieva G., Vergara G., Reinke R., Leung H.	Genome-wide association study of seedling stage salinity tolerance in temperate japonica rice germplasm.	BMC Genet.	19(1)	2	2018		
45414	29162684	Lin D., Jiang Q., Ma X., Zheng K., Gong X., Teng S., Xu J., Dong Y.	Rice <i>TSV3</i> Encoding Obg-Like GTPase Protein Is Essential for Chloroplast Development During the Early Leaf Stage Under Cold Stress.	G3 (Bethesda)	8(1)	253-263	2018	YGL10,PSAA,CAB1R,OBGM,OBGC1,RPL21,TSV3,RBCL,FTSZ1,FGL,RBCS,YGL1,PSBA	CAO, OsCAO, CAO1, OsCAO1, Oslls1, Lls1, DVR, PGL,PsaA, psaA, PsAA1, psaA1,cab1R, LHCP, CAB, OsLhcb1, Lhcb1, Cab1, OsCAB1, Lhcb1b, OsLhcb1b, CAB2R,OsObgM, ObgM,OsObgC1, ObgC1,OsRPL21, Rpl21, OsRpl21,OsObgC2, ObgC2, TSV3/OsObgC2,rbcL, rbcA, OsrbcL,FtsZ1, FtsZ, OsFtsZ1, OsFtsZ,fgl(fl), fl, fgl, OsFGL, OsPorB, PoPA, PORA, porA, OsPORA, PORB, OsPORB,rbcS, OsRbcS, RBCS-C, RbcS2, OsRBCS2, RbcS1, OsRbcS2, OsrbcS1,OsYGL1, CHLG, Ygl1, CS, OsCHLG,PsbA, psbA, OsPsbA, PSBD1, OsPSBD1, psbD1
45415	29354150	Lu Q., Niu X., Zhang M., Wang C., Xu Q., Feng Y., Yang Y., Wang S., Yuan X., Yu H., Wang Y., Chen X., Liang X., Wei X.	Genome-Wide Association Study of seed dormancy and the Genomic Consequences of Improvement Footprints in Rice (<i>Oryza sativa</i> L.).	Front Plant Sci	8	2213	2017		
45416	29304739	Ullah F., Hamilton M., Reddy A.S.N., Ben-Hur A.	Exploring the relationship between intron retention and chromatin accessibility in plants.	BMC Genomics	19(1)	21	2018		
45417	28977518	Lu K., Li T., He J., Chang W., Zhang R., Liu M., Yu M., Fan Y., Ma J., Sun W., Qu C., Liu L., Li N., Liang Y., Wang R., Qian W., Tang Z., Xu X., Lei B., Zhang K., Li J.	qPrimerDB: a thermodynamics-based gene-specific qPCR primer database for 147 organisms.	Nucleic Acids Res.	46(D1)	D1229-D1236	2018		
45418	29322237	Zhang M., Ye J., Xu Q., Feng Y., Yuan X., Yu H., Wang Y., Wei X., Yang Y.	Genome-wide association study of cold tolerance of Chinese indica rice varieties at the bud burst stage.	Plant Cell Rep.	37(3)	529-539	2018		
45419	29320723	Singh T.P., Sogi D.S.	Comparative study of structural and functional characterization of bran protein concentrates from superfine, fine and coarse rice cultivars.	Int. J. Biol. Macromol.	111	281-288	2018		
45420	29317720	Liu K., He A., Ye C., Liu S., Lu J., Gao M., Fan Y., Lu B., Tian X., Zhang Y.	Root Morphological Traits and Spatial Distribution under Different Nitrogen Treatments and Their Relationship with grain yield in Super Hybrid Rice.	Sci Rep	8(1)	131	2018		
45421	29316385	Sheshukova K.A., Wilken L.R.	Analysis of recombinant human serum albumin Extraction and Degradation in Transgenic Rice Extracts.	Biotechnol. Prog.			2018		
45422	29313662	Chu J.M., Ye T.T., Ma C.J., Lan M.D., Liu T., Yuan B.F., Feng Y.Q.	Existence of Internal N7-Methylguanosine Modification in mRNA Determined by Differential Enzyme Treatment Coupled with Mass Spectrometry Analysis.	ACS Chem. Biol.			2018		
45423	29321648	Peng C., Chen X., Wang X., Xu X., Wei W., Wang C., Xu J.	Comparative analysis of miRNA expression profiles in transgenic and non-transgenic rice using miRNA-Seq.	Sci Rep	8(1)	338	2018		
45424	29322324	Lee S.B., Hur Y.J., Cho J.H., Lee J.H., Kim T.H., Cho S.M., Song Y.C., Seo Y.S., Lee J., Kim T.S., Park Y.J., Oh M.K., Park D.S.	Molecular mapping of qBK1 WD , a major QTL for bakanae disease resistance in rice.	Rice (N Y)	11(1)	3	2018		
45425	29310584	Pan T., Lin L., Wang J., Liu Q., Wei C.	Long branch-chains of amylopectin with B-type crystallinity in rice seed with inhibition of starch branching enzyme I and IIb resist in situ degradation and inhibit plant growth during seedling development : Degradation of rice starch with inhibition of SBEI/IIb during seedling development.	BMC Plant Biol.	18(1)	9	2018		
45426	29126343	Zhou H., Finkemeier I., Guan W., Tossounian M.A., Wei B., Young D., Huang J., Messens J., Yang X., Zhu J., Wilson M.H., Shen W., Xie Y., Foyer C.H.	oxidative stress-triggered interactions between the succinyl- and acetyl-proteomes of rice leaves.	Plant Cell Environ.	41(5)	1139-1153	2018		
45427	29331724	Ranjan R., Kumar N., Dubey A.K., Gautam A., Pandey S.N., Mallick S.	Diminution of arsenic accumulation in rice seedlings co-cultured with Anabaena sp.: Modulation in the expression of lower silicon transporters, two nitrogen dependent genes and lowering of antioxidants activity.	Ecotoxicol. Environ. Saf.	151	109-117	2018		
45428	29354282	Ajmera I., Shi J., Giri J., Wu P., Stekel D.J., Lu C., Hodgman T.C.	Regulatory feedback response mechanisms to phosphate starvation in rice.	NPJ Syst Biol Appl	4	4	2018		
45429	29359127	Solis J., Gutierrez A., Mangu V., Sanchez E., Bedre R., Linscombe S., Baisakh N.	Genetic Mapping of Quantitative Trait Loci for grain yield under Drought in Rice under Controlled Greenhouse Conditions.	Front Chem	5	129	2017		
45430	29298308	Ma X., Zheng Z., Lin F., Ge T., Sun H.	Genetic analysis and gene mapping of a low stigma exposed mutant gene by high-throughput sequencing.	PLoS ONE	13(1)	e0186942	2018	LESR	
45431	29301510	Jang S.W., Kim Y., Khan A.L., Na C.I., Lee I.J.	Exogenous short-term silicon application regulates macro-nutrients, endogenous phytohormones, and protein expression in Oryza sativa L.	BMC Plant Biol.	18(1)	4	2018	IMPA1B,_,_,PETC	OsIMPA1B, IMPalpha1B, OsIMPalpha1B, Imp3, OsImpalpha1b, Impalpha1b,OsMed22_1, Med22_1,,PetC, OsPETC
45432	29354362	Rehman S., J?rgensen B., Rasmussen S.K., Aziz E., Akhtar W., Mahmood T.	Expression analysis of proteinase inhibitor-II under <i>Os</i>RGLP2 promoter in response to wounding and signaling molecules in transgenic <i>Nicotiana benthamiana</i>.	3 Biotech	8(1)	51	2018		
45433	29299612	Zhou Y., Tao Y., Yuan Y., Zhang Y., Miao J., Zhang R., Yi C., Gong Z., Yang Z., Liang G.	Characterisation of a novel quantitative trait locus, GN4-1, for grain number and yield in rice (Oryza sativa L.).	Theor. Appl. Genet.	131(3)	637-648	2018		
45434	29366830	Du H., Huang F., Wu N., Li X., Hu H., Xiong L.	Integrative Regulation of Drought Escape through ABA-Dependent and -Independent Pathways in?Rice.	Mol Plant	11(4)	584-597	2018		
45435	29342194	Frouin J., Languillaume A., Mas J., Mieulet D., Boisnard A., Labeyrie A., Bettembourg M., Bureau C., Lorenzini E., Portefaix M., Turquay P., Vernet A., P?rin C., Ahmadi N., Courtois B.	Tolerance to mild salinity stress in japonica rice: A genome-wide association mapping study highlights calcium signaling and metabolism genes.	PLoS ONE	13(1)	e0190964	2018		
45436	29237079	Nemoto Y., Hori K., Izawa T.	Fine-tuning of the setting of critical day length by two casein kinases in rice photoperiodic flowering.	J. Exp. Bot.	69(3)	553-565	2018		
45437	29314086	Perata P.	The rice SUB1A gene: Making adaptation to submergence and post-submergence possible.	Plant Cell Environ.	41(4)	717-720	2018		
45438	29367191	Meng L., Sun L., Tan L.	Progress in ZIP transporter gene family in rice.	Yi Chuan	40(1)	33-43	2018		
45439	29367235	Zhang J., Zhang H., Srivastava A.K., Pan Y., Bai J., Fang J., Shi H., Zhu J.K.	Knockdown of Rice MicroRNA166 Confers Drought Resistance by Causing leaf rolling and Altering Stem Xylem Development.	Plant Physiol.	176(3)	2082-2094	2018	HB4	OSHB4, OsHox32, HOX32, OsHB4, Oshox32, PHB3, OsHDZ13, OsHDZIP13, HDZ13, HDZIP13
45440	29434613	Ye J., Niu X., Yang Y., Wang S., Xu Q., Yuan X., Yu H., Wang Y., Wang S., Feng Y., Wei X.	Divergent <i>Hd1</i>, <i>Ghd7</i>, and <i>DTH7</i> Alleles Control heading date and Yield Potential of <i>Japonica</i> Rice in Northeast China.	Front Plant Sci	9	35	2018		
45441	29329278	Oda Y., Kobayashi N.I., Tanoi K., Ma J.F., Itou Y., Katsuhara M., Itou T., Horie T.	T-DNA Tagging-Based Gain-of-Function of OsHKT1;4 Reinforces Na Exclusion from Leaves and Stems but Triggers Na Toxicity in Roots of Rice Under Salt Stress.	Int J Mol Sci	19(1)		2018		
45442	29354152	Chen G., Liu C., Gao Z., Zhang Y., Zhang A., Zhu L., Hu J., Ren D., Yu L., Xu G., Qian Q.	Variation in the Abundance of <i>OsHAK1</i> Transcript Underlies the Differential Salinity Tolerance of an <i>indica</i> and a <i>japonica</i> Rice Cultivar.	Front Plant Sci	8	2216	2017		
45443	29304466	Liang C., Xiao H., Hu Z., Zhang X., Hu J.	Uptake, transportation, and accumulation of C60 fullerene and heavy metal ions (Cd, Cu, and Pb) in rice plants grown in an agricultural soil.	Environ. Pollut.	235	330-338	2018		
45444	27605933	Moin M., Bakshi A., Saha A., Dutta M., Sheshu M Madhav, P B Kirti	Rice Ribosomal Protein Large Subunit Genes and Their Spatio-temporal and Stress Regulation.	Front Plant Sci	7	1284	2016	RPL31,RPL26.1,_,RPL37,RPL21.2,RPL19,RPL44,RPL15,RPL5,RPL13B,RPL13A,RPL51,_,_,RPL2,RPL35A.3,_,RPL34,_,RPL6,RPL4,RPL28,RPL29,_,RPL36.2,RPL17,RPL18A,RPL26,RPL38,RPL30E,RPL3B,BIP123,_,RPL23A	OsRPL31,OsRPL26.1,RPL9, OsRPL9,OsRPL37,OsRPL21.2,RPL19.3, OsRPL19.3, OsRPL19, RPL19e, OsRPL19e,OsRPL44,OsRPL15,rpl5, RL5, RPL18p/L5e, RPL18p, RPL5e, OsRPL5, OsRPL5e, OsRPL18p,RPL13b, OsRPL13b,OsRPL13a, RPL13a,OsRPL51,OsRPL5, RPL5,RPL12, RPL10, OsRPL12, OsRPL10,rpl2, rpl8, RPL8, OsRPL2, OsRPL8,OsRPL35a.3, RPL35a.3,OsRPL7/L12, RPL7/L12, RPL7, RPL12, OsRPL7, OsRPL12,OsRPL34,OsRPL27.3, RPL27.3,OsRPL6,OsRPL4,OsRPL28,OsRPL29,rpL32_9.3, RPL32, OsrpL32_9.3, OsRPL32,OsRPL36.2,RPL22, OsRPL17, OsRPL22,rpl18a, RPL18a, OsRPL18a,RPL24b, OsRPL26, OsRPL24b,OsRPL38, RPL38A, OsRPL38A,OsRPL30e, RPL30e,OsRPL3B, RPL3, OsRPL3,OsBIP123, RPL24a, OsRPL24a, RPL24B, OsRPL24B,OsRPL14, RPL14,OsRPL23A
45445	0	Luo J., Zhang H., He W., Zhang Y., Cao W., Zhang H., Bao Y.	OsSNAP32, a SNAP25-type SNARE protein-encoding gene from rice, enhanced resistance to blast fungus	Plant Growth Regul.	80(1)	37-45	2016	SNAP32	OsSNAP32
45446	0	Nakamura J., Yuasa T., Tran Thi Huong, Harano K., Tanaka S., Iwata T., Phan T., Iwaya M.	Rice homologs of inducer of CBF expression (OsICE) are involved in cold acclimation	Plant Biotechnology	28(3)	303-309	2011	TPP1,BHLH2,DREB1B,ICE2,HSFA3	OsTPP1, OsTPS, TPP,OsbHLH002, bHLH002, OsbHLH2, bHLH2, OsICE1, ICE1, OsbHLH002/OsICE1,OsDREB1B, ERF31, OsERF031, OsERF#031, OsERF31, AP2/EREBP#169, AP2/EREBP169, OsDREB1b, OsDREB1C, OsCBF1, CBF1,OsbHLH001, bHLH001, OsbHLH1, bHLH1, OsICE2,HSfA3, OsHsfA3, OsHsf-07, HSF07, OsHSF7, HSF7, DLN57, OsDLN57
45447	0	Sabhavat Bhaskar Naik, Dhanasekar DivyaNihar Sahu, Raman Meenakshi Sundaram, Preetinder Singh Sarao	A new gene Bph33(t) conferring resistance to brown planthopper (BPH), Nilaparvata lugens (St?l) in rice line RP2068-18-3-5	Euphytica	214	53	2018	BPH33	OsDjC10, DjC10, Bph33(t), Bph33
45448	27903806	Chen Y., Ma J., Anthony J Miller, Luo B., Wang M., Zhu Z., Pieter B F Ouwerkerk	OsCHX14 is Involved in the K+ Homeostasis in Rice (Oryza sativa) Flowers.	Plant Cell Physiol.	57(7)	1530-1543	2016	COI1,JAR1,CHX14	OsCOI1a, OsCOI1, Os_F0728, COI1a, F0728,  OsFBL4, FBL4,OsJAR1, OsGH3.5, GH3.5, OsGH3-5, GH3-5,OsCHX14
45449	15347787	Sze H., Padmanaban S., Fran?oise Cellier, Honys D., Ning-Hui Cheng, Kevin W Bock, Genevieve Con?j?ro, Li X., Twell D., John M Ward, Kendal D Hirschi	Expression patterns of a novel AtCHX gene family highlight potential roles in osmotic adjustment and K+ homeostasis in pollen development.	Plant Physiol.	136(1)	2532-47	2004	CHX6,CHX5,CHX2,CHX1,CHX9,CHX7,CHX8,CHX11,CHX17,CHX15,CHX3,CHX13,CHX16,CHX12,CHX14,CHX10,CHX4	OsCHX06, CHX06, OsCHX6,OsCHX05, CHX05, OsCHX5,OsCHX02, CHX02, OsCHX2,OsSTA85, STA85, OsCHX01, CHX01, OsCHX1,OsCHX09, CHX09, OsCHX9,OsCHX07, CHX07, OsCHX7,OsCHX08, CHX08, OsCHX8,NaT, OsCHX11,OsCHX17,OsCHX15,OsSTA234, STA234, OsCHX03, CHX03, OsCHX3,OsCHX13,OsCHX16,OsCHX12,OsCHX14,OsCHX10,OsSTA291, OsCHX04, CHX04, OsCHX4
45450	21908474	Shimo H., Ishimaru Y., An G., Yamakawa T., Nakanishi H., Nishizawa N.K.	Low cadmium (LCD), a novel gene related to cadmium tolerance and accumulation in rice.	J. Exp. Bot.	62(15)	5727-34	2011	LCD,LEA22,MDR6	OsLCD,OsLEA22, RAB25, OsRab16, Rab16, OsABA45, ABA45,OsABCB2, ABCB2, OsPGP2, OsMDR6, OsABCB2_1, OsABCB2_2
45451	28500269	Zhou L.J., Xiao L.T., Xue H.W.	Dynamic Cytology and Transcriptional Regulation of Rice Lamina Joint Development.	Plant Physiol.	174(3)	1728-1746	2017	LC3,LC1	OsLC3,OsGH3-1, GH3-1, OsGH3.1,GH3.1, OsLC1
45452	0	Zhang H., Liu L., Cai M., Zhu S., Zhao J., Zheng T., Xu X., Zeng Z., Niu J., Jiang L., Chen S., Wan J.	A Point Mutation of magnesium chelatase OsCHLI Gene Dampens the Interaction Between CHLI and CHLD Subunits in Rice	Plant Mol. Biol. Rep.	33	1975-1987	2015	ELL,WP2,YGL98,TRX14,TRX3,TRX8	chlI, OsChlI, ChlI, CHLI, OsCHLI, OsCHLI/ELL, OsELL,TRXZ, OsPAP10, PAP10, OsPAP10/OsTRXz, OsTRXz, TRXz, OsTrx25, Trx25,OsChlD, ChlD, CHLD, OsCHLD, Ygl7, YGL3, OsvWA12, vWA12,OsTRX m2, TRX m2, OsTRXM2, TRXM2, OsTrx14, Trx14,OsTRXh10, TRXh10, OsTRX2, TRX2, TRXF, OsTRXF, OsTrx03, Trx03, OsTrx3, Trx3,OsTRXM1, TRXM1, OsTrx08, Trx08, OsTrx8, Trx8
45453	29653969	Mach J.	So Inclined: Phosphate Status and Leaf Angle in Rice.	Plant Cell	30(4)	743-744	2018	BHLH081,RLI1,SPX1,SPX2,BU1	OsbHLH081, bHLH081, OsBC1, BC1,OsRLI1, RLI1/HINGE1, HINGE1, OsHINGE1,OsSPX1,OsSPX2,ILI4, OsILI4 , OsBU1, BU1/ILI4, OsbHLH172, bHLH172
45454	29716991	Yao L., Cheng X., Gu Z., Huang W., Li S., Wang L., Wang Y.F., Xu P., Ma H., Ge X.	The AWPM-19 Family Protein OsPM1 Mediates Abscisic Acid Influx and Drought Response in Rice.	Plant Cell	30(6)	1258-1276	2018	BZIP72,BZIP46,NCED1,ONAC2,NAC6,PM1,PP2C30,ABA8OX1,BOC1,PP2C9,DCA1,RFP1	OsbZIP72, OsAREB2, OsABF4, ABF4, Osbzip72, OsABI5, ABI5,ABL1, bZIP46, OsABL1, OsbZIP46, OsAREB8, OsABF2, ABF2, OsABF3, ABF3, OsbZIP46CA1, OsZIP46, ZIP46, OsbZIP46/OsABF2,OSNCED1, OsNCED-1, OsNCED3, OsNced3, NCED3, OsNCED9, NCED9,SNAC1, snac1, OsNAC9, ONAC002, ONAC2, ONAC033, ONAC33, ONAC043, ONAC43, ONAC044, ONAC44, OsNAC19, NAC19, SNAC1/ONAC002, OsSNAC1, OsNAC9, OsNAC1,OsNAC6, ONAC048, NAC48, SNAC2, SNAC2/OsNAC6, OsNAC6/ONAC048, OsSNAC2, SNAC-2, OsSNAC-2, OsNAC2,AWPM-19, PM19, OsPM1, OsPM-1, OsPM19L1, PM19L1, OsAWPM-19, OsPM19,OsPP2C30, OsPP48, PP48,OsABA8OX1, CYP707A5, OsCYP707A5, ABA8ox1, OsABA8ox1, OsABA8'OH1, ABA8'OH1 ,OsSRO1c, SRO1c, OsBOC1,OsPP15, PP15, OsPP2C09, PP2C09, OsPP2C9, OsPP2C3,OsDCA1, DST1, OsDST1,  OsRING161, RING161,OsRZFP34, OsRFP1, RZFP34, UCIP18, OsUCIP18,  OsRING160, RING160
45455	29610209	Ruan W., Guo M., Xu L., Wang X., Zhao H., Wang J., Yi K.	An SPX-RLI1 Module Regulates Leaf Inclination in Response to Phosphate Availability in Rice.	Plant Cell	30(4)	853-870	2018	SPX2,SPX1,RLI1,BHLH081,BU1	OsSPX2,OsSPX1,OsRLI1, RLI1/HINGE1, HINGE1, OsHINGE1,OsbHLH081, bHLH081, OsBC1, BC1,ILI4, OsILI4 , OsBU1, BU1/ILI4, OsbHLH172, bHLH172
45456	29674519	Arthur R.A., Bennetzen J.L.	Discovery of Lineage-Specific Genome Change in Rice Through Analysis of Resequencing Data.	Genetics	209(2)	617-626	2018		
45457	29691314	Lu X., Zhang J., Brown B., Li R., Rodr?guez-Romero J., Berasategui A., Liu B., Xu M., Luo D., Pan Z., Baerson S.R., Gershenzon J., Li Z., Sesma A., Yang B., Peters R.J.	Inferring Roles in Defense from Metabolic Allocation of Rice Diterpenoids.	Plant Cell	30(5)	1119-1131	2018	CPS4,CPS2	OsCPS4, CYC1, OsCYC1, OsCyc1, cpsl3, OsCPSL3, OsCPSsyn, OsCyc1/OsCPS4, OsTPS15, Os-CPS4, TPS11, OsTPS11,OsCPS2, cps2, OsCPS2ent, CYC2, OsCyc2, OsCYC2, OsCPSL1, cpsl1, OsCyc2/OsCPS2, OsTPS7, Os-CPS2, TPS13, OsTPS13
45458	29695866	Wang W., Mauleon R., Hu Z., Chebotarov D., Tai S., Wu Z., Li M., Zheng T., Fuentes R.R., Zhang F., Mansueto L., Copetti D., Sanciangco M., Palis K.C., Xu J., Sun C., Fu B., Zhang H., Gao Y., Zhao X., Shen F., Cui X., Yu H., Li Z., Chen M., Detras J., Zhou Y., Zhang X., Zhao Y., Kudrna D., Wang C., Li R., Jia B., Lu J., He X., Dong Z., Xu J., Li Y., Wang M., Shi J., Li J., Zhang D., Lee S., Hu W., Poliakov A., Dubchak I., Ulat V.J., Borja F.N., Mendoza J.R., Ali J., Li J., Gao Q., Niu Y., Yue Z., Naredo M.E.B., Talag J., Wang X., Li J., Fang X., Yin Y., Glaszmann J.C., Zhang J., Li J., Hamilton R.S., Wing R.A., Ruan J., Zhang G., Wei C., Alexandrov N., McNally K.L., Li Z., Leung H.	Genomic variation in 3,010 diverse accessions of Asian cultivated rice.	Nature	557(7703)	43-49	2018	GW5,QSH1,C,WX1,SH4,PROG1,RC,LK3,BH4	qSW5/GW5, GSE5, OsGSE5, OsGW5, qSW5,qSH1, qsh1, qSH-1, RIL1, OsRIL1 ,C, Cp, OsC1, Os-C1, C1, OsMyb6, Myb6, OsPL6, PL6, OsGL1E, GL1E, Os2R_MYB63, 2R_MYB63, OsC1PLSr, C1PLSr,wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx,sh4, SH4, SHAT2, SHA1, qSH4, QSH4, OsSh4, Sh4, Osh4, OsMSL23, MSL23,OsPROG1, ZOS7-02, OsZOS7-02,Rc, OsbHLH017, OsbHLH17, SD7-1, qSD7-1/qPC7, OsGL3C, GL3C,lk3(t), lk3(t)*, SG3, GS3, SG3-GS3, OsGW3, OsGS3, RGG3/GS3/Mi/OsGGC1, RGG3, Mi, OsGGC1, GGC1, OsSYL3, SYL3, TT2, OsTT2,Bh4, OsBH4, OsATL14, ATL14
45459	29588389	Guo T., Chen K., Dong N.Q., Shi C.L., Ye W.W., Gao J.P., Shan J.X., Lin H.X.	<i>GRAIN SIZE.AND NUMBER1</i> Negatively Regulates the OsMKKK10-OsMKK4-OsMPK6 Cascade to Coordinate the Trade-off between grain number per Panicle and GRAIN SIZE.in Rice.	Plant Cell	30(4)	871-888	2018	SMG1,SMG2,GSN1	OsMKK4, MKK4, OsMKK4/SMG1, OsMAPKK4, MAPKK4, OsMEK4, MEK4, OsSMG1, SMG1/OsMEK6, OsMEK6, MEK6, OsSTS, STS,YDA1, OsMKKK10, MKKK10, SMG2/OsMKKK10, OsSMG2, OsMAPKKK10, MAPKKK10,MKP1, OsMKP1, osmkp1, LARGE8, GLA1, OsGLA1
45460	29632179	Chen H., Ma B., Zhou Y., He S.J., Tang S.Y., Lu X., Xie Q., Chen S.Y., Zhang J.S.	E3 Ubiquitin ligase SOR1 regulates ethylene response in rice root by modulating stability of Aux/IAA protein.	Proc. Natl. Acad. Sci. U.S.A.	115(17)	4513-4518	2018	SOR1,TIR1,FBOX206,IAA20,EIN2,IAA26,IAA9	MHZ2, OsMHZ2, OsSOR1, OsRING272, RING272, OsvWA13, vWA13,OsTIR1, OsFbox248, Fbox248, Os_F071, AFB,  OsFBL21, FBL21,OsAFB2, ABF2, OsAFB2-1, OsAFB2-2, OsFbox206, Os_F0492, OsTIR1, TIR1,  OsFBL16, FBL16,OsIAA20,OsEIN2, MHZ7/OsEIN2, OsEIN2/MHZ7, MHZ7 ,OsIAA26,OsIAA9, OsIAA2
45461	29610210	Heng Y., Wu C., Long Y., Luo S., Ma J., Chen J., Liu J., Zhang H., Ren Y., Wang M., Tan J., Zhu S., Wang J., Lei C., Zhang X., Guo X., Wang H., Cheng Z., Wan J.	OsALMT7 Maintains Panicle Size and grain yield in Rice by Mediating Malate Transport.	Plant Cell	30(4)	889-906	2018	PAAB1-1,REP2,VPE2	OsALMT7, ALMT7,OsVPE3, VPE3, OsREP-2, REP-2alpha, REP-2beta, OsaLeg2, aLeg2,OsVPE2, OsaLeg1, OsLeg1, Leg1
45462	29523686	Hamiaux C., Drummond R.S.M., Luo Z., Lee H.W., Sharma P., Janssen B.J., Perry N.B., Denny W.A., Snowden K.C.	Inhibition of strigolactone receptors by <i>N</i>-phenylanthranilic acid derivatives: Structural and functional insights.	J. Biol. Chem.	293(17)	6530-6543	2018	D14	d14(d10), dwf13, d10, d14, D88, HTD2, OsHTD2, OsD14, qPPB3, D88/D14, HTD4
45463	29562302	Shao J.F., Xia J., Yamaji N., Shen R.F., Ma J.F.	Effective reduction of cadmium accumulation in rice grain by expressing OsHMA3 under the control of the OsHMA2 promoter.	J. Exp. Bot.	69(10)	2743-2752	2018	ZIP5,HMA2,GCC7	OsZIP5, OsZIP8, ZIP8, OsZIP9,OsHMA2, osHMA2, OsHMA2v ,HMA3, OsHMA3, OsHMA3a, OsHMA3n, osHMA3, OsHMP34, HMP34
45464	29735369	Abe K., Araki E., Suzuki Y., Toki S., Saika H.	Production of high oleic/low linoleic rice by genome editing.	Plant Physiol. Biochem.	131	58-62	2018		
45465	29576481	Fan J., Bai P., Ning Y., Wang J., Shi X., Xiong Y., Zhang K., He F., Zhang C., Wang R., Meng X., Zhou J., Wang M., Shirsekar G., Park C.H., Bellizzi M., Liu W., Jeon J.S., Xia Y., Shan L., Wang G.L.	The Monocot-Specific Receptor-like Kinase SDS2 Controls Cell Death and Immunity in Rice.	Cell Host Microbe	23(4)	498-510.e5	2018	RLCK118,PAL1,RLCK176,RBOHB,PR5,SPL11,SDS2	OsRLCK118,OsPAL, Pal1*, Pal1, PAL, Pal_1, PalI, PAL2, OsPAL01, PAL01, OSPAL, CP-1, GP-1, OsPAL1, PAL3, OsPAL3,OsRLCK176,rbohB, OsrbohB, Os rbohB, OsRbohB, OsNox1, Nox1, Os-RbohB, RbohB, OsRboh1, Rboh1,OsPR5, Pir2, PR-5, PR5-1,spl11, spl11*, OsPUB11, PUB11,  OsPUB11/SPL11, PUB11/SPL11,OsSDS2, SDRLK-SDS2, OsSDRLK-SDS2
45466	29509987	Chen X., Chen H., Yuan J.S., K?llner TG., Chen Y., Guo Y., Zhuang X., Chen X., Zhang Y.J., Fu J., Nebenf?hr A., Guo Z., Chen F.	The rice terpene synthase gene OsTPS19 functions as an (S)-limonene synthase in planta, and its overexpression leads to enhanced resistance to the blast fungus Magnaporthe oryzae.	Plant Biotechnol. J.	16(10)	1778-1787	2018	TPS20,TPS19	OsTPS20, TPS41, OsTPS41,OsTPS19, TPS15, OsTPS15
45467	29651780	Chu T.T.H., Hoang T.G., Trinh D.C., Bureau C., Meynard D., Vernet A., Ingouff M., Do N.V., P?rin C., Guiderdoni E., Gantet P., Maurel C., Luu D.T.	Sub-cellular markers highlight intracellular dynamics of membrane proteins in response to abiotic treatments in rice.	Rice (N Y)	11(1)	23	2018	TIP1;1,GAP1,PIP2;4,PIP2;5,GLUP4,PIP1A,SCAMP1,TIP2;2	OsTIP1;1, TIP1-1, rTIP1,OsGAP1,OsPIP2;4, PIP2.4, PIP2-4, OsPIP2-4,OsPIP2;5, PIP2-5,glup4(esp8), esp8, glup4, OsRab5B2, Rab5a, OsRab5a, GPA1/Rab5a, GPA, GLUP4/Rab5, GLUP4/Rab5a, GPA1, OsGPA1,OsPIP1a, OsPIP1;1, PIP1a, RWC-1, PIP1-1, RWC1, OsPIP1-1, PIP1;1, PIP1-5,Scamp1, OsSCAMP1,OsTIP2;2, TIP2-2
45468	29663070	Zhu C.Q., Zhu X.F., Wang C., Dong X.Y., Shen R.F.	Nitrate inhibits the remobilization of cell wall phosphorus under phosphorus-starvation conditions in rice (Oryza sativa).	Planta	248(1)	185-196	2018	SPX2,SPX3,IPS1,SPX1,PI1,SPX5	OsSPX2,OsSPX3,OsIPS1,OsSPX1,OsIPS2, IPS2, OsPI1,OsSPX5
45469	29684657	Wang C., Guo W., Cai X., Li R., Ow D.W.	Engineering low-cadmium rice through stress-inducible expression of OXS3-family member genes.	N Biotechnol	48	29-34	2019	O3L2,O3L3	OsO3L2,OsO3L3
45470	29495079	Ye N.H., Wang F.Z., Shi L., Chen M.X., Cao Y.Y., Zhu F.Y., Wu Y.Z., Xie L.J., Liu T.Y., Su Z.Z., Xiao S., Zhang H., Yang J., Gu H.Y., Hou X.X., Hu Q.J., Yi H.J., Zhu C.X., Zhang J., Liu Y.G.	Natural variation in the promoter of rice calcineurin B-like protein10 (OsCBL10) affects flooding tolerance during seed germination among rice subspecies.	Plant J.	94(4)	612-625	2018	TPP1,PK4,CIPK30,CIPK05,CIPK20,CBL10,CIPK15,CIPK08,TPP4,TPP8,AMY3D,CIPK01	OsTPP1, OsTPS, TPP,OsCIPK19, OsPK4, OsPK04, Os-CIPK19, CIPK19, OsSnRK3.20, SnRK3.20,OsCIPK30, OsSnRK3.5, SnRK3.5,OsCIPK05, CIPK5, OsCIPK5, OsSTA7, OsSnRK3.2, SnRK3.2,OsCIPK20, OsSnRK3.15, SnRK3.15,OsCBL10,OsCIPK15, OsSnRK3.31, SnRK3.31,OsCIPK08, CIPK8, OsCIPK8, OsSnRK3.4, SnRK3.4,OsTPP4, OsTPP7, TPP7, OsTPP2, TPP2,OsTPP8, OsTPP2,Amy3D/E*(RAmy3D/E), alpha Amy3, AmyII-4, AMY1.3, Amy3D, Amy3D/E*, RAmy3D/E, Amy3D_E, Amy8, aAmy3, RAmy3D, OsAmy3D, alphaAmy3, OsRamy3D,OsCIPK01, CIPK1, OsCIPK1, OsSnRK3.3, SnRK3.3
45471	29692796	Zhang Y., Li S., Xue S., Yang S., Huang J., Wang L.	Phylogenetic and CRISPR/Cas9 Studies in Deciphering the Evolutionary Trajectory and Phenotypic Impacts of Rice <i>ERECTA</i> Genes.	Front Plant Sci	9	473	2018	SIK1,RLCK204,RLCK85	OsSIK1, OsER2, ER2, OsERL, ERL,OsRLCK204, OsER1, ER1,OsRLCK85, OsER2, ER2
45472	29720986	Lee D.K., Redillas MCFR., Jung H., Choi S., Kim Y.S., Kim J.K.	A Nitrogen Molecular Sensing System, Comprised of the <i>ALLANTOINASE</i> and <i>UREIDE PERMEASE 1</i> Genes, Can Be Used to Monitor N Status in Rice.	Front Plant Sci	9	444	2018	UPS1,PHS39,ALN	OsUPS1,OsAAH, AAH, OsPHS39,OsALN
45473	29436485	Yokoo S., Inoue S., Suzuki N., Amakawa N., Matsui H., Nakagami H., Takahashi A., Arai R., Katou S.	Comparative analysis of plant isochorismate synthases reveals structural mechanisms underlying their distinct biochemical properties.	Biosci. Rep.	38(2)		2018	ICS1	OsICS1, OsICS, ICS
45474	29513388	Shinya T., Yasuda S., Hyodo K., Tani R., Hojo Y., Fujiwara Y., Hiruma K., Ishizaki T., Fujita Y., Saijo Y., Galis I.	Integration of danger peptide signals with herbivore-associated molecular pattern signaling amplifies anti-herbivore defense responses in rice.	Plant J.	94(4)	626-637	2018	DPF,PEP4,_,PEPR1,PEPR2,PEP1,PEP2,PEP5,PEP6,KS4,PEP3	OsbHLH025, bHLH025, bHLH25,OsPep4, Pep4, OsPROPEP4, PROPEP4,OsAT4c, AT4c,OsPEPR1,OsPEPR2,OsPep1, Pep1, OsPROPEP1, PROPEP1,OsPep2, Pep2, OsPROPEP2, PROPEP2,OsPep5, Pep5, OsPROPEP5, PROPEP5,OsPep6, Pep6, OsPROPEP6, PROPEP6,OsKS4, KS4, KSL4, OsKSL4, DTS2, OsDTS2, OsTPS16, TPS16, TPS8, OsTPS8,OsPep3, Pep3, OsPROPEP3, PROPEP3
45475	29702261	Xu R., Duan P., Yu H., Zhou Z., Zhang B., Wang R., Li J., Zhang G., Zhuang S., Lyu J., Li N., Chai T., Tian Z., Yao S., Li Y.	Control of grain size.and Weight by the OsMKKK10-OsMKK4-OsMAPK6 Signaling Pathway in Rice.	Mol Plant	11(6)	860-873	2018	DSG1,SMG2,SMG1	OsMAPK6, MAPK6, OsMPK6, OsSIPK, SIPK, OsMAPK1, MAPK1, MPK1, OsMPK1, MPK6, OsDSG1,YDA1, OsMKKK10, MKKK10, SMG2/OsMKKK10, OsSMG2, OsMAPKKK10, MAPKKK10,OsMKK4, MKK4, OsMKK4/SMG1, OsMAPKK4, MAPKK4, OsMEK4, MEK4, OsSMG1, SMG1/OsMEK6, OsMEK6, MEK6, OsSTS, STS
45476	29702186	Li H., Liu C., Zhou L., Zhao Z., Li Y., Qu M., Huang K., Zhang L., Lu Y., Cao M., Gao S., Zhang S.	Molecular and functional characterization of the magnesium transporter gene ZmMGT12 in maize.	Gene	665	167-173	2018		
45477	29514259	E Z., Li T., Zhang H., Liu Z., Deng H., Sharma S., Wei X., Wang L., Niu B., Chen C.	A group of Nuclear factor Y transcription factors are sub-functionalized during endosperm development in monocots.	J. Exp. Bot.	69(10)	2495-2510	2018	HAP3K,ERF114,HAP5K,HAP5H,HAP2I,LEC1,ERF115,HAP3D,HAP5L,HAP5J,HAP5I	OsHAP3K/OsNF-YB1, OsHAP3K, OsNF-YB1, NF-YB1, nf-yb1, OsLEC1, OsNF-YB-1, NFYB1, OsEnS-41,OsERF#114, OsERF114,OsHAP5K, OsNF-YC11, NF-YC11, OsNF-YC12, NF-YC12, NFYC12,OsHAP5H, OsNF-YC9, NF-YC9, NFYC9,OsHAP2I, NF-YA, CBF-B, NF-YA8, OsNF-YA8, OsEnS-136, NFYA8,OsHAP3E, HAP3E, OsLEC1/OsHAP3E, OsLEC1, LEC1, OsNF-YB7, NF-YB7, NFYB7, L1L ,OsERF#115, OsERF115, AP2/EREBP#110, AP2/EREBP110, OsEnS-123,OsHAP3D, OsEnS-83, OsNF-YB9, NF-YB9, NFYB9, OsLEC1A, LEC1A,OsEnS-133, OsHAP5L, OsNF-YC12, NF-YC12, OsNF-YC11, NF-YC11, NFYC11,OsHAP5J, OsNF-YC8, NF-YC8, NFYC8,OsEnS-5, OsHAP5I, OsNF-YC10, NF-YC10, NFYC10
45478	29650967	Giri J., Bhosale R., Huang G., Pandey B.K., Parker H., Zappala S., Yang J., Dievart A., Bureau C., Ljung K., Price A., Rose T., Larrieu A., Mairhofer S., Sturrock C.J., White P., Dupuy L., Hawkesford M., Perin C., Liang W., Peret B., Hodgman C.T., Lynch J., Wissuwa M., Zhang D., Pridmore T., Mooney S.J., Guiderdoni E., Swarup R., Bennett M.J.	Rice auxin influx carrier OsAUX1 facilitates root hair elongation in response to low external phosphate.	Nat Commun	9(1)	1408	2018	RAU1	OsLAX1, OsRAU1, OsAUX1, LAX1, AUX1
45479	29696032	Hao X., Zeng M., Wang J., Zeng Z., Dai J., Xie Z., Yang Y., Tian L., Chen L., Li D.	A Node-Expressed Transporter OsCCX2 Is Involved in Grain Cadmium Accumulation of Rice.	Front Plant Sci	9	476	2018	CDT1	OsCDT1, OsCCX2, CCX2, OsNCX8, NCX8
45480	29383786	Gong R., Cao H., Zhang J., Xie K., Wang D., Yu S.	Divergent functions of the GAGA-binding transcription factor family in rice.	Plant J.	94(1)	32-47	2018	D11,RFT1,TID1,HD5,WFP,SRS3,HD3A,EF1,_,_,_,LFL1,GS5,GS2,_,GW2,BC12	d11(d8), dwf10, d8, D11/CYP724B1, d11, CYP724B1, GNS4, OsD11, PMM1, OsPMM1, PMM1/D11, NBG4, OsCPB1, CPB1, CPB1/D11,FT-L 3, OsFTL3, FTL3, FT-L3, RFT, OsRFT1,OsTID1, TubA2, SRS5, OS-TubA2, OsTubA2, OsSRS5, ,Hd5(t)*, Hd5, qHD5, HAP3H, OsHAP3H, NF-YB, CBF-A, DTH8 , qHD5(t)*, Ghd8, Ghd8/DTH8, Lhd1, NF-YB11, OsNF-YB11, NFYB11, LH8, DTH8/Ghd8, RH8, DTH8/Ghd8/LHD1, CAR8, DTH8/Ghd8/ OsHAP3H, EF8, OsEF8,OsSPL14, SPL14, IPA1, WFP/IPA1, OsSPL14/WFP/IPA1, OsIPA1,  IPA1/OsSPL14,OsSRS3, SAR1, OsSAR1, KIN13A, OsKIN13A,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,OsGBP3, GBP3,OsBBR, BBR, OsGBP4, GBP4,OsGBP2, GBP2,OsLFL1, OsSTA29, STA29,OsSCP26, SCP26, OsGS5,OsGRF4, GRF4, GS2/OsGRF4, PT2, GLW2, GS2/GL2, LGS1, OsLGS1,OsGBP1, GBP1,OsGW2, OsRING429, RING429, GNL44, OsGNL44,bc12, gdd, GDD1, BC12/GDD1, OsGDD1, OsBC12/GDD1, OsBC12, LGW, OsLGW
45481	29611871	Jiang P., Wang S., Zheng H., Li H., Zhang F., Su Y., Xu Z., Lin H., Qian Q., Ding Y.	SIP1 participates in regulation of flowering time in rice by recruiting OsTrx1 to Ehd1.	New Phytol.	219(1)	422-435	2018	EF1,SET33,ZOS9-19,RFT1,GHD7,MADS51,HD3A	Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,OsSET33, OsSDG723, SDG723, OsTrx1, Trx1, OsTrx1/SDG723, DLN219, OsDLN219,OsSIP1, OsSUF4, SUF4, OsZOS9-19, SIP1,FT-L 3, OsFTL3, FTL3, FT-L3, RFT, OsRFT1,Ghd2, Ghd7, OsGhd7, OsCCT26, OsCMF8, OsI, Ghd7/Hd4, Hd4, EH7-1/Hd4, Ghd7-0a, EH7-1, EH7/Ghd7, EH7, OsEH7, GLW7.1, OsGLW7.1,OsMADS51, OsMADS65, MADS65, qHd1, DLN36, OsDLN36,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a 
45482	29617374	Dong H., Zhao H., Li S., Han Z., Hu G., Liu C., Yang G., Wang G., Xie W., Xing Y.	Genome-wide association studies reveal that members of bHLH subfamily 16 share a conserved function in regulating flag leaf angle in rice (Oryza sativa).	PLoS Genet.	14(4)	e1007323	2018	D61,_,ILI7,ILI3	d61*, dwf42, d61, OsBRI1, OSBRI1, BRI1, Os BRI1, Osbri1, OsBRKq1, BRKq1,OsBUL3, BUL3, OsbHLH174, bHLH174 ,OsILI7, OsbHLH173, bHLH173,OsILI3, OsbHLH153, bHLH153, OsBUL2, BUL2
45483	29655221	Aung M.S., Kobayashi T., Masuda H., Nishizawa N.K.	Rice HRZ ubiquitin ligases are crucial for response to excess iron.	Physiol Plant			2018	TIFY11C,IRO2,_,LOX8,YSL2,TOM1,NAS2,HRZ1,IRT1,HRZ2,NAS1,YSL15	OsJAZ2, JAZ2, OsJAZ 11, OsJAZ11, Os-JAZ11, JAZ11, OsTIFY11c, OsJAZ1, JAZ1,OsIRO2, OsbHLH056, bHLH056, bHLH56, OsbHLH56,Lox2:Os:1, OsLOX9, LOX9, OsLOX8, LOX8, OsLOX2, LOX2, OsRLL, OsHI-LOX, HI-LOX, RLL2 LOX, RLL2, Lox2osPil, OsLOX2;1, LOX2;1, OsLOX1, OsLOX7, LOX7,OsLOX8, OsLOX9, LOX9, OsLOX2;3, LOX2;3, OsLOX2, OsLOX1, CM-LOX8,OsYSL2, Os-YSL2, OsYs6 ,OsTOM1, ZIFL4, OsZIFL4 ,OsNAS2, OsNAS1,OsHRZ1,  OsRING149, RING149,OsIRT1, ZIP10, OsZIP10, OsZIP12, ZIP12,OsRFPH2-24, OsHRZ2, OsRING150, RING150, CLG1, OsCLG1,OsNAS1,OsYSL15, OsYs7
45484	29619515	Tan J., Wang M., Shi Z., Miao X.	OsEXPA10 mediates the balance between growth and resistance to biotic stress in rice.	Plant Cell Rep.	37(7)	993-1002	2018	EXPA10	OsEXPA10, OsEXP10, osaEXPa1.28
45485	29670011	Sim J.S., Kesawat M.S., Kumar M., Kim S.Y., Mani V., Subramanian P., Park S., Lee C.M., Kim S.R., Hahn B.S.	Lack of the alpha1,3-Fucosyltransferase Gene (<i>OsFucT</i>) Affects Anther Development and pollen Viability in Rice.	Int J Mol Sci	19(4)		2018	EIF4A2,_,_,_,MRLK61,_,RPBF,_,_,ICL,_,_,BHLH6,_,KCS12,_,_,_,_,_,_,_,_,_,_,_,_,WAK101,_,_,FUCTA,_	eIF-4a, EIF4A, OseIF4A, eIF4A2, eIF4A-3, OsRH23,,,,OsMRLK61,KIF19, OsKIF19,OsDof3, OsDOF3, OsEnS-34, OsDof10, Dof10, OsDof-10, OsDOF1, DOF1, DOF3, OsRPBF, OsDOF7,,,OsEnS-107, EnS-107, OsI85, I85, OsICL, Osl85, l43, Osl43, OsL85,,,OsbHLH006, bHLH006, OsbHLH6, bHLH6, RERJ1, OsRERJ1, bHLH35,,OsKCS12,,OsFbox412, Fbox412, Os_F0356,  OsFBX266, FBX266,,,,,,,,,,,OsWAK101, OsRLCK292, RLCK292,,,OsFUT11, FUT11, FucTA, OsFucTA, OsFucT, FucT, "alpha1,3-FucT",
45486	29784797	Miao C., Xiao L., Hua K., Zou C., Zhao Y., Bressan R.A., Zhu J.K.	Mutations in a subfamily of abscisic acid receptor genes promote rice growth and productivity.	Proc. Natl. Acad. Sci. U.S.A.	115(23)	6058-6063	2018	PYL/RCAR8,PYL/RCAR7,PYL/RCAR9,PYL/RCAR11,PYL/RCAR13,PYL/RCAR4,PYL/RCAR13,PYL/RCAR6,PYL/RCAR10,PYL/RCAR7,PYL/RCAR5,PYL/RCAR3,PYL/RCAR2	OsPYL/RCAR8, PYL8, OsPYL8, OsPYL9, PYL9, CAPIP1,OsPYL/RCAR7, PYL7, OsPYL7, OsPYL8, PYL8, OsEnS-90, RCAR1, OsRCAR1,OsPYL/RCAR9, PYL9, OsPYL9, OsPYL2, PYL2,OsPYL/RCAR11, OsPYL12, PYL12, OsPYL11, PYL11,OsPYL/RCAR1, PYL1, OsPYL1, OsPYL4, PYL4,OsPYL/RCAR4, PYL4, OsPYL4, OsPYL6, PYL6,OsEnS-89, OsPYL/RCAR13, OsPYL13, PYL13,OsPYL/RCAR6, PYL6, OsPYL6, OsPYL5, PYL5,OsPYL/RCAR10, PYL10, OsPYL10, OsPYL1, PYL1, R10, OsPYL/R10,OsPYL/RCAR7, OsPYL7, PYL7, OsPYL12,OsPYL/RCAR5, PYL5, OsPYL5, OsPYL11, PYL11,OsPYL/RCAR3, PYL3, OsPYL3, OsPYL10, PYL10, OsRCAR1, RCAR1 ,OsPYL/RCAR2, PYL2, OsPYL2, OsPYL3, PYL3
45487	29760062		Correction for Ishikawa et al., Ion-beam irradiation, gene identification, and marker-assisted breeding in the development of low-cadmium rice.	Proc. Natl. Acad. Sci. U.S.A.	115(21)	E4950-E4951	2018		
45488	29802991	Bhattarai U., Subudhi P.K.	Genetic analysis of yield and agronomic traits under reproductive-stage drought stress in rice using a high-resolution linkage map.	Gene	669	69-76	2018		
45489	29581216	Zhou Y.B., Liu C., Tang D.Y., Yan L., Wang D., Yang Y.Z., Gui J.S., Zhao X.Y., Li L.G., Tang X.D., Yu F., Li J.L., Liu L.L., Zhu Y.H., Lin J.Z., Liu X.M.	The Receptor-Like Cytoplasmic Kinase STRK1 Phosphorylates and Activates CatC, Thereby Regulating H2O2 Homeostasis and Improving salt tolerance in Rice.	Plant Cell	30(5)	1100-1118	2018	RLCK25,NOE1,RLCK284,CATA,RLCK154,CATB,_,RLCK199,_	OsRLCK25,CATC, OsCat, OsCatC, OsCATC, OsNOE1, noe1, catC, OsCATC, CAT3, OsCAT3, LLM9428, OsLLM9428,OsRLCK284, YK12, PTK16, OsPTK16, STK, OsSTK,CATA1, Cat A1*, OSCAT-A, Cat2, CatA1, CAT-A, OsCatA, OsCAT, CAT, catA, OSCATA, OsCATc, OsCATA, OsCAT1A, CAT1, OsCAT1, OsCATC, OsCAT2,OsRLCK154, STRK1, OsSTRK1,CatB, CAT-B, OsCatB, OsCATB, OsCAT1B, CAT1B, CAT2, OsCAT2,RLK,OsRLCK199, LRRK1, OsLRRK1,RLK
45490	29757631	Attanayake G., Walter T., Walker K.D.	Understanding Which Residues of the Active Site and Loop Structure of a tyrosine aminomutase Define Its Mutase and Lyase Activities.	Biochemistry	57(25)	3503-3514	2018		
45491	29717020	Tao J., Liang W., An G., Zhang D.	<i>OsMADS6</i> Controls Flower Development by Activating Rice <i>FACTOR OF DNA METHYLATION LIKE1</i>.	Plant Physiol.	177(2)	713-727	2018	_,_,_,MFO1,_	OsFDML1, FDML1,OsFDML2, FDML2,X1, OsFDML3, FDML3,OsMADS6, MADS6, OsMFO1,OsFDML4, FDML4
45492	29868050	Yoo Y., Park J.C., Cho M.H., Yang J., Kim C.Y., Jung K.H., Jeon J.S., An G., Lee S.W.	Lack of a Cytoplasmic RLK, Required for ROS Homeostasis, Induces Strong Resistance to Bacterial Leaf Blight in Rice.	Front Plant Sci	9	577	2018	SOD2,AAO2,PEX11-1,LOX11,PR1A,PR1B,CATA,EIP8,RLCK2,RBBI3-1,POX22.3	OsSOD2, OsSOD2-Cu/Zn, SOD2-Cu/Zn, OsCSD3, CSD3, CuZnSOD3, OsCSD2, CSD2, Cu/Zn-SOD2,OsAAO2, L-APX, RIP5, OsRIP5,OsPEX11-1, OsPEX11,OsLOX11, OsRCI-1, RCI-1, OsBphi262, OsLOX12, OsLOX2.2, LOX2.2, LOX2.1, OsLOX2.1, OsLOX14, LOX14,OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1, OsPR1b, PR1alpha, OsPR1alpha,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1, OsPR1a, PR1a,CATA1, Cat A1*, OSCAT-A, Cat2, CatA1, CAT-A, OsCatA, OsCAT, CAT, catA, OSCATA, OsCATc, OsCATA, OsCAT1A, CAT1, OsCAT1, OsCATC, OsCAT2,OsEIP8, OsVOZ1, VOZ1 ,OsRLCK2, rrsRLK,RBBI3-1, OsBBTI4, BBTI4, IBP1.1, RBBTI4, APIP4, OsAPIP4,POX22.3, OSPER, OsPOX, POX, Pir3, prx111, POX22, OsPOX1, POX1, OsPOX22.3, OsPR9, PR9
45493	29868104	Zheng X., Yang L., Li Q., Ji L., Tang A., Zang L., Deng K., Zhou J., Zhang Y.	MIGS as a Simple and Efficient Method for Gene Silencing in Rice.	Front Plant Sci	9	662	2018		
45494	29774038	Liu J., Xu M., Estavillo G.M., Delhaize E., White R.G., Zhou M., Ryan P.R.	Altered Expression of the Malate-Permeable Anion Channel OsALMT4 Reduces the Growth of Rice Under Low Radiance.	Front Plant Sci	9	542	2018	ALMT4	OsALMT4
45495	29720556	Yang X., Li G., Tian Y., Song Y., Liang W., Zhang D.	A Rice glutamyl-tRNA synthetase Modulates Early Anther Cell Division and Patterning.	Plant Physiol.	177(2)	728-744	2018	_,CDKB2;1 ,ERS2,ERS1 ,ARC,ERS3	H4,Orysa;CDKB2;1, OsCDKB2;1, cdc2Os3, Oscdc20s-3, cdc20s-3, Orysa;CDKB;2, CYCB2.1, CDKB-2, OsCDKB-2,OsERS2,OsERS1 ,OsARC,OsERS3
45496	29851259	Yang J., Cho L.H., Yoon J., Yoon H., Wai A.H., Hong W.J., Han M., Sakakibara H., Liang W., Jung K.H., Jeon J.S., Koh H.J., Zhang D., An G.	Chromatin interacting factor OsVIL2 increases biomass and rice grain yield.	Plant Biotechnol. J.			2018	LC2,EMF2B,GN1A,CKX4	OsLC2, OsVIL2, VIL2, OsVIL3,OsEMF2b, EMF2b, GW9, OsGW9, GW9/OsEMF2b ,Gn1a, OsCKX2, CKX2, ckx2, Gn1a/OsCKX2, Os CKX2, CKX2/Gn1a,OsCKX4, ckx4, OsSCRM, OsSCRM2, SCRM, SCRM2
45497	30080644	Singh G., Sarkar N.K., Grover A.	Mapping of domains of heat stress transcription factor OsHsfA6a responsible for its transactivation activity.	Plant Sci.	274	80-90	2018		
45498	29562289	Xiao H., Xu Y., Ni C., Zhang Q., Zhong F., Huang J., Liu W., Peng L., Zhu Y., Hu J.	A rice dual-localized pentatricopeptide repeat protein is involved in organellar RNA editing together with OsMORFs.	J. Exp. Bot.	69(12)	2923-2936	2018	HEMA,MORF9,_,ST1,PGL1,MORF2,YGL1,CAB1R,MORF8A,RBCL,RPOA,_,RBCS,MORF1,NDHD,MORF3,MORF8,PSBA,RPOTP,PSAA,PETB,RPOB,WSP1	HEMA1, OsHEMA, GluTR, OsHEMA1, hemA,OsMORF9,ccmFc, ccmFc-1,st1(ws1), ws1, st1, OsST1, RNRS1, OsRNRS1, rnrs1, RNRS, SDL/RNRS1, SDL, OsSDL, NSL2, OsNSL2,OsPGL1,OsMORF2, OsMORF2a, MORF2a,OsYGL1, CHLG, Ygl1, CS, OsCHLG,cab1R, LHCP, CAB, OsLhcb1, Lhcb1, Cab1, OsCAB1, Lhcb1b, OsLhcb1b, CAB2R,MORF8-like, OsMORF8a, MORF8a, OsMORF8-1, MORF8-1,rbcL, rbcA, OsrbcL,rope, rpoalpha, Rpoalpha, rope, RpoA ,atpA,rbcS, OsRbcS, RBCS-C, RbcS2, OsRBCS2, RbcS1, OsRbcS2, OsrbcS1,OsMORF1,ndhD, NdhD, NDH4, NADH4,OsMORF3,OsMORF8, OsMORF8b, MORF8b, OsMORF8-2, MORF8-2,PsbA, psbA, OsPsbA, PSBD1, OsPSBD1, psbD1,OsRpo Tp, OsRpoTp, NEP, RpoTp, rpoTP2,PsaA, psaA, PsAA1, psaA1,petB, OsPETB,rpoB, RpoB, Rpobeta,OsWSP1, OsMORF2b, MORF2b, OsMORF2, OsMORF2/WSP1
45499	30080641	Ma G., Li J., Li J., Li Y., Gu D., Chen C., Cui J., Chen X., Zhang W.	OsMTP11, a trans-Golgi network localized transporter, is involved in manganese tolerance in rice.	Plant Sci.	274	59-69	2018		
45500	29749629	Sun S.K., Chen Y., Che J., Konishi N., Tang Z., Miller A.J., Ma J.F., Zhao F.J.	Decreasing arsenic accumulation in rice by overexpressing OsNIP1;1 and OsNIP3;3 through disrupting arsenite radial transport in roots.	New Phytol.	219(2)	641-653	2018	NIP1;1,LSI1,NIP3;3	OsNIP1;1, NIP1-1, rMIP1, MIP1, OsNIP1.1, NIP1.1,lsi1, NIP2-1, OsNIP2;1, NIP2;1, OsLsi1, lsi(t), OsNIP2.1/OsLsi1/OsSIIT1, OsNIP2.1, NIP2.1,OsNIP3;3, NIP3-3, OsNIP3.3, NIP3.3
45501	29788450	Guo F., Zhang H., Liu W., Hu X., Han N., Qian Q., Xu L., Bian H.	Callus initiation from root explants employs different strategies in rice and Arabidopsis.	Plant Cell Physiol.			2018	IAA11,WOX11,QHB	OsIAA11,OsWOX11, Os WOX11, OsWOX12A,OsQHB, OsWOX9, WOX9, WOX5, Os WOX5, OsWOX5, QHB/OsWOX9
45502	29744685	Ohashi M., Ishiyama K., Kojima S., Konishi N., Sasaki K., Miyao M., Hayakawa T., Yamaya T.	Outgrowth of Rice Tillers Requires Availability of Glutamine in the Basal Portions of Shoots.	Rice (N Y)	11(1)	31	2018	GLN1;2,ASN1,ASN	OsGLN1;2, GSr, RGS8, OsGS1;2, GS1;2, GS1, OsGS1-2, GS1-2, OsGS1.2, GS1.2,OsASN1, OsAS1, AS1,OsASN2, OsAS, OsAS2, AS2
45503	29524649	Xie Y., Zhang Y., Han J., Luo J., Li G., Huang J., Wu H., Tian Q., Zhu Q., Chen Y., Kawano Y., Liu Y.G., Chen L.	The Intronic cis Element SE1 Recruits trans-Acting Repressor Complexes to Repress the Expression of ELONGATED UPPERMOST INTERNODE1 in?Rice.	Mol Plant	11(5)	720-735	2018	_,SD1,SAP18,GA2OX1,HDAC2,EUI1,GD1,D18	OsVAL2, VAL2, DLN195, OsDLN195,sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2, OsPHQ1, OsPHq1, PHq1,OsSAP18,OsGA2ox1, ga2ox-1, OsGA2ox-1, ga2ox, ga2ox 1, GA2ox1,OsHDAC2, HDA710, OsHDA710 ,eui1, GA16,17ox, CYP714D1, EUI, CYP714D1/EUI, OsEUI, LG5, OsLG5,OsGD1, OsVAL1, VAL1, DLN186, OsDLN186,d18-h  (d18-I, d18h), dwf15, d25, d18, d18-k, d18-AD, d18-dy, OsGA3ox2, ga3ox2, OsGA3OX2, GA3OX2, OsGA3ox-2, GA3ox-2, GA3ox1
45504	29951522	Jin Y.M., Piao R., Yan Y.F., Chen M., Wang L., He H., Liu X., Gao X.A., Jiang W., Lin X.F.	Overexpression of a New Zinc Finger Protein Transcription Factor <i>OsCTZFP8</i> Improves cold tolerance in Rice.	International Journal of Genomics	2018	5480617	2018	CTZFP8	OsCTZFP8
45505	29775494	Wang Z., Xia Y., Lin S., Wang Y., Guo B., Song X., Ding S., Zheng L., Feng R., Chen S., Bao Y., Sheng C., Zhang X., Wu J., Niu D., Jin H., Zhao H.	osa-miR164a targets OsNAC60 and negatively regulates rice immunity against the blast fungus Magnaporthe oryzae.	Plant J.			2018	PR10A,MIR162A,MIR394,MIR398B,MIR169,MIR164A,Y37,MIR1863,MIR1320,NAC60,MIR169H,MIR167H,MIR5153,MIR172A,NH1	PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,miR162a, osa-miR162a, osa-MIR162a, OsMIR162a,OsmiR394, miR394, osa-MIR394,miR398b, osa-miR398b, osa-MIR398b, OsmiR398b,miR169, osa-miR169, osa-MIR169a, miR169a, osa-miR169a,miR164a, osa-miR164a,NAC11, ONAC011, ONAC11, OMTN4, OsY37, OsY37N, OsY37I, OsNAC1, DLN172, OsDLN172, OsNAC092, NAC092, OsNAC92, NAC92,miR1863, osa-miR1863, osa-MIR1863, osa-MIR1863a, osa-miR1863a,miR1320, osa-miR1320, osa-MIR1320osa-miR1320-3p osa-miR1320-5p,ONAC060, ONAC60, OMTN3, OsNAC60, DLN265, OsDLN265,miR169h, osa-miR169h, osa-MIR169h,miR167h, osa-miR167h, osa-MIR167hosa-miR167h-3p osa-miR167h-5p,miR5153, osa-miR5153, osa-MIR5153, MIR5153-3p,OsmiR172a, miR172a, osa-MIR172a, Osa-miR172a ,OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2, DLN5, OsDLN5,  OsBTBA1, BTBA1
45506	29567449	Hu Z., Lu S.J., Wang M.J., He H., Sun L., Wang H., Liu X.H., Jiang L., Sun J.L., Xin X., Kong W., Chu C., Xue H.W., Yang J., Luo X., Liu J.X.	A Novel QTL qTGW3 Encodes the GSK3/SHAGGY-Like Kinase OsGSK5/OsSK41 that Interacts with OsARF4 to Negatively Regulate grain size and Weight in Rice.	Mol Plant	11(5)	736-749	2018	BIN2,IAA27,IAA17,TGW3,IAA21,IAA30,IAA23,ARF2,IAA8	GSK2, Os GSK2, OsGSK2, Os BIN2, OsBIN2, BIN2/GSK2, OsSK22/OsGSK7, OsSK22, OsGSK7, SK22, GSK7, OsSK22/GSK2 ,OsIAA27,OsIAA17, OsIAA17q5, IAA17q5,GL3.3, OsSK41, SK41, OsGSK5, GSK5, qTGW3, OsTGW3, OsGSK5/OsSK41, OsSK41/OsGSK5, GL3.3/TGW3,OsIAA21,OsIAA30,OsIAA23,OsARF2, OsARF4, ARF4,OsIAA8
45507	29648614	Wang Z., Wan L., Xin Q., Chen Y., Zhang X., Dong F., Hong D., Yang G.	Overexpression of OsPGIP2 confers Sclerotinia sclerotiorum resistance in Brassica napus through increased activation of defense mechanisms.	J. Exp. Bot.	69(12)	3141-3155	2018	PGIP2	Ospgip2, pgip2, OsPGIP2
45508	29574592	Lenka S.K., Muthusamy S.K., Chinnusamy V., Bansal K.C.	Ectopic Expression of Rice PYL3 Enhances Cold and Drought Tolerance in Arabidopsis thaliana.	Mol. Biotechnol.	60(5)	350-361	2018	PYL/RCAR3	OsPYL/RCAR3, PYL3, OsPYL3, OsPYL10, PYL10, OsRCAR1, RCAR1 
45509	29774039	Guo S., Dai S., Singh P.K., Wang H., Wang Y., Tan J.L.H., Wee W., Ito T.	A Membrane-Bound NAC-Like Transcription Factor OsNTL5 Represses the Flowering in <i>Oryza sativa</i>.	Front Plant Sci	9	555	2018	RFT1,NAC40,EF1,HD3A	FT-L 3, OsFTL3, FTL3, FT-L3, RFT, OsRFT1,ONAC040, ONAC40, ONAC054, ONAC54, OsNTL5, NTL5, UCIP17, OsUCIP17,Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a 
45510	29776748	Monaghan J.	Conserved Degradation of Orthologous RLCKs Regulates Immune Homeostasis.	Trends Plant Sci.	23(7)	554-557	2018	MSRMK2,CDPK18,CDPK4,RLCK176	OsMSRMK2, OsMAPK5, OsMAP1, OsMPK3, OsBIMK1, OsMAPK2, MPK5, BIMK1, MAPK2, MAPK5, MPK3, OsMPK5, OsMAPK3, OsMAPK5b, MAPK3,OsCDPK18, OsCPK18, CDPK5, OsCDPK5, CPK18,OsCDPK4, OsCPK4, CPK4, CDPK1,OsRLCK176
45511	29851294	Sengupta S., Mangu V., Sanchez L., Bedre R., Joshi R., Rajasekaran K., Baisakh N.	An actin-depolymerizing factor from the halophyte smooth cordgrass, Spartina alterniflora (SaADF2), is superior to its rice homolog (OsADF2) in conferring drought and salt tolerance when constitutively overexpressed in rice.	Plant Biotechnol. J.			2018	RLCK319,CDPK6,_,ACP,ADF2	OsRLCK319, OsCRLK21, CRLK21,OsCDPK6, OsCPK6, CPK6,OsWD40-1, WD40-1, OsWD40, WD40,  OsDWD68, DWD68,OsACP,OsADF
45512	29855737	Ye Y., Wu K., Chen J., Liu Q., Wu Y., Liu B., Fu X.	OsSND2, a NAC family transcription factor, is involved in secondary cell wall biosynthesis through regulating MYBs expression in rice.	Rice (N Y)	11(1)	36	2018	_,BC7,_,NAC62,_,BC6,_,CESA7	OsMYB55/61, OsMYB55, MYB55, OsMYB61, MYB61, OsMYB61a, MYB61a, Os2R_MYB5, 2R_MYB5 ,OsCesA4, OsCESA4, CESA4, OS_CESA04, BC11, bc7t, Bc7(t), bc-7, OsCesA 4, CesA4, FC17/CESA4, FC17, OsFC17,OsMYB86L, MYB86L,ONAC062, ONAC62, OsSND2, SND2,OsMYB58/63, OsMYB58, OsMYB63, MYB58/63, MYB58, MYB63, OsMYB58/63b, MYB58/63b, Os2R_MYB51, 2R_MYB51,Bc6*, Bc6, OsCesA9, CESA9, OsCESA9, OS_CESA09, OsCesA 9, CesA9, BC88, SDBC1, OsSDBC1,R2R3-MYB, OsMYB55/61-L,  MYB55/61-L,  OsMYB55,  OsMYB61-L, MYB55,  MYB61-L, OsMYB61L, MYB61L, OsMYB61b, MYB61b, Os2R_MYB53, 2R_MYB53, OsMYB2P-1, MYB2P-1,OsCesA7, OsCESA7, OS_CESA07, OsCesA 7, CesA7
45513	29528490	Xue Z., Tan Z., Huang A., Zhou Y., Sun J., Wang X., Thimmappa R.B., Stephenson M.J., Osbourn A., Qi X.	Identification of key amino acid residues determining product specificity of 2,3-oxidosqualene cyclase in Oryza species.	New Phytol.	218(3)	1076-1088	2018	_	OsOSC7, OSC7, OsPS, PS, OsOSC7/OsPS, OsOSC7i, OsOSC7j 
45514	29794169	Tan F., Lu Y., Jiang W., Wu T., Zhang R., Zhao Y., Zhou D.X.	DDM1 Represses Noncoding RNA Expression and RNA-Directed DNA Methylation in Heterochromatin.	Plant Physiol.	177(3)	1187-1197	2018	DRM2,DDM1B,DDM1A,CRR1	OsDRM2, osdrm2, DRM2-1,OsDDM1b, DDM1b, DDM1, DLN98, OsDLN98, CHR741, OsCHR741,OsDDM1a, DDM1a, DLN225, OsDLN225, CHR746, OsCHR746,
45515	29785454	Lin K.F., Tsai M.Y., Lu C.A., Wu S.J., Yeh C.H.	The roles of Arabidopsis HSFA2, HSFA4a, and HSFA7a in the heat shock response and cytosolic protein response.	Botanical Studies	59(1)	15	2018		
45516	29436050	Mao C., Ding J., Zhang B., Xi D., Ming F.	OsNAC2 positively affects salt-induced cell death and binds to the OsAP37 and OsCOX11 promoters.	Plant J.	94(3)	454-468	2018	COI1B,CDPK4,COX11,WRKY43,CCD1,ONAC2,SKOR ,SAP11,LEA3-1,RS2,TIL1,ACO3,ERF127,GORK ,RAC6,AP37 ,WRKY46	OsCOI1b, COI1b, OsCOI1H, COI1H, OsFbox260, Fbox260, Os_F0646,  OsFBL23, FBL23, OsCOl-1, COl-1,OsCDPK4, OsCPK4, CPK4, CDPK1,OsCOX11,OsWRKY43,OsCCD1,SNAC1, snac1, OsNAC9, ONAC002, ONAC2, ONAC033, ONAC33, ONAC043, ONAC43, ONAC044, ONAC44, OsNAC19, NAC19, SNAC1/ONAC002, OsSNAC1, OsNAC9, OsNAC1,OsSKOR, OsK5.1, K5.1,OsDOG, OsSAP11, DOG,OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3, OsLEA3A, LEA3A,OsMYB91, MYB91, OsRS2, OsMYB125, MYB125 ,NAC2, OsNAC2, ONAC004, ONAC4, ONAC034, ONAC34, ONAC058, ONAC58, OMTN2, Ostil1, OsNAC2/ONAC004, OsORE1.2, DLN113, OsDLN113,OsACO3, ACO2, OsACO2,OsWR3, WR3, OsERF#127, OsERF127, AP2/EREBP#023, AP2/EREBP23, OsERF3, ERF3,OsGORK, OsK5.2, K5.2, KOR1, OsKOR1, OsSKOR, SKOR,OsRacB, RacB, OsRac6,OsAP37,OsWRKY46, WRKY91, OsWRKY91
45517	29847205	Kusajima M., Shima S., Fujita M., Minamisawa K., Che F.S., Yamakawa H., Nakashita H.	Involvement of ethylene signaling in Azospirillum sp. B510-induced disease resistance in rice.	Biosci. Biotechnol. Biochem.	82(9)	1522-1526	2018	EIN2,PR10A,WRKY45	OsEIN2, MHZ7/OsEIN2, OsEIN2/MHZ7, MHZ7 ,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsWRKY45, OsWRKY45-1, OsWRKY45-2, WRKY45-1, WRKY45-2
45518	29781573	Bang S.W., Lee D.K., Jung H., Chung P.J., Kim Y.S., Choi Y.D., Suh J.W., Kim J.K.	Overexpression of OsTF1L, a rice HD-Zip transcription factor, promotes lignin biosynthesis and stomatal closure that improves drought tolerance.	Plant Biotechnol. J.			2018	NHX4,HSP70,COMTL5,PME2,ACA1,GLR1.3,NAC22,WRI3,ABCG5,PME6,_,_,WSI18,DHHC4,TF1L,POXN,_,CAD6,CASPL5B1,PMEI46,FC1,CAX4,PRX22,_,ERF101	OsNHX4,OsHSP70, OsEnS-45, EnS-45,OsCOMTL5, OsCOMT4, COMT4,OsPME2,osACA1, OsACA1, OsACA3, OsPM3ATP2,OsGLR1.3, OsGLR1.1, GLR1.1, OsGLR9.7, GLR9.7,ONAC022, ONAC22,AP2/EREBP52, AP2/EREBP#052, ERF52, OsWRI3,OsABCG5,OsPME6, OsPME1,CYP450,,OsLEA14, OsLEA14a, OsLEA14b, wsi18, pwsi18, OsWsi18, OsLEA14/WSI18,OsDHHC4, OsDHHC04, DHHC04,OsTF1L, OsHDZ24, OsHDZIP24, HDZ24, HDZIP24,poxN, prx38, prxRPN, RPN, poxN/PRX38, Osprx38, OsPOXN,PRX2, OsPRX2,OsCAD6,OsCASPL5B1,PMEI, OsPMEI46,OsCAD7, fc1, CAD7,CAX2, OsCAX2, OsCAX4, OsSTA47, OsNCX3, NCX3,prx22, OsPRX22, OsPOD,,OsERF#101, OsERF101, OsDERF6, DERF6, AP2/EREBP#089, AP2/EREBP89, OsRap2.6, Rap2.6, ERF113, OsERF113, OsERF101/OsRAP2.6
45519	29752473	Soda N., Gupta B.K., Anwar K., Sharan A., Govindjee, Singla-Pareek SL., Pareek A.	Publisher Correction: Rice intermediate filament, OsIF, stabilizes photosynthetic machinery and yield under salinity and heat stress.	Sci Rep	8(1)	7621	2018		
45520	29717128	Giri J., Bhosale R., Huang G., Pandey B.K., Parker H., Zappala S., Yang J., Dievart A., Bureau C., Ljung K., Price A., Rose T., Larrieu A., Mairhofer S., Sturrock C.J., White P., Dupuy L., Hawkesford M., Perin C., Liang W., Peret B., Hodgman C.T., Lynch J., Wissuwa M., Zhang D., Pridmore T., Mooney S.J., Guiderdoni E., Swarup R., Bennett M.J.	Author Correction: Rice auxin influx carrier OsAUX1 facilitates root hair elongation in response to low external phosphate.	Nat Commun	9(1)	1810	2018		
45521	29875491		Whale hunt, saltwater rice and cancer-drug boom.	Nature	558(7708)	10-11	2018		
45522	29915152	Zhang N., Yu H., Yu H., Cai Y., Huang L., Xu C., Xiong G., Meng X., Wang J., Chen H., Liu G., Jing Y., Yuan Y., Liang Y., Li S., Smith S.M., Li J., Wang Y.	A Core Regulatory Pathway Controlling Rice tiller angle Mediated by the <i>LAZY1</i>-Dependent Asymmetric Distribution of Auxin.	Plant Cell	30(7)	1461-1475	2018	IAA11,ALDH3B1    ,RAU1,ARF7,EPR1,HSFA2D,SAUR8,ALDH2A,ETT2,MADS57,RAU3,WOX6,YUCCA7,IAA20,IAA9,SAUR23,SAUR19,IAA25,LA1,IAA2,_,ETT1,WOX11,YUCCA3,ALDH7,ARF9,RAU4,IAA12	OsIAA11,OsALDH3B1    ,OsLAX1, OsRAU1, OsAUX1, LAX1, AUX1,OsARF7,OsEPR1, OsLHY, LHY,HSfA2d, OsHsfA2d, OsHsf-08, rHsf7, HSF08, OsHSF8, HSF8, HSF7, OsHSF7, OsHSFA2dI, OsHSFA2dII, OsHSFA2dIII, OsHsfA6b, HsfA6b, OsHsf2d, Hsf2d,OsSAUR8,OsALDH2a, ALDH2a, Aldh2a, OsSTA73, OsALDH2B5, ALDH2B5  ,OsARF2, ARF2, OsETT2, ARF3a, OsARF3a, DLN16, OsDLN16, ARF3,OsMADS57, MADS-57,OsLAX3, OsRAU3, OsAUX2, LAX3, AUX2, OsAUX3, AUX3, ARF2,OsWOX6, Os WOX6, OsWOX12B, WOX12B,OsYUCCA7, OsYUC7, OsYUC5, YUC5, YUC7,OsIAA20,OsIAA9, OsIAA2,OsSAUR23,OsSAUR19,OsIAA25,OsLa1,OsIAA2,OsNIT1, NIT1, OsNIT2, NIT2, OsNIT4B, NIT4B,OsARF15, ARF15, OsETT1, ARF3b, OsARF3b, OsARF3-1, ARF3-1, OsARF3, ARF3, DLN154, OsDLN154,OsWOX11, Os WOX11, OsWOX12A,OsYUCCA3, OsYUC3, YUC3,OsALDH7, osaldh7, LDH, ALDH7B7, OsALDH7B6, ALDH7B6, OsAnt1, Ant1,OsARF9,OsLAX4, OsRAU4, OsAUX4, LAX4, AUX4,OsIAA12
45523	29969697	Ke S., Liu X.J., Luan X., Yang W., Zhu H., Liu G., Zhang G., Wang S.	Genome-wide transcriptome profiling provides insights into panicle development of rice (Oryza sativa L.).	Gene	675	285-300	2018	_,_,MADS47,_,_,_,_,_,_,MADS50,_,MADS13,CYP71T3,_,MADS56,MADS22,_,MADS58,_,GE1,GFD1,MADS55,PME8,PAP2,PLS34,MFO1,MADS4,_,CYP94D7,CYP71AC1,UBP1-8,_,_,_,_,Hb2,_,RAG,_,_,_,_,_,_,_,LHS1,MADS26,CYP704A5,MADS20,CYP704A3,COG1,_,MADS24,_,_,MADS21,_,_,CYP92A9,UBP1-5,CYP714B2,MADS7,PLA1,EUI1,PDC1,FST ,_,_,_,_,_,_,CFO1,_,_	PPR,,OsMADS47, OsMDP1, MDP, MDP1,SIP7,PPR,PPR,,PPR,PPR,OsMADS50, AGL20, SOC1, OsSOC1, RMADS208, OsSOC1/ OsMADS50/DTH3, DTH3, OsDTH3,OsDOG1L-2, DOG1L-2,OsMADS13, MAF1, RMADS206,OsCYP71T3,,OsMADS56, FDRMADS8, RMADS214,OsMADS22, RMD1, DLN68, OsDLN68,PPR,OsMADS58,OsEnS-40, EnS-40,ge1, ge, CYP78A13, OsCYP78A13, GE, BG2, GES, OsGE/CYP78B5, CYP78B5, OsCYP78B5,OsGFD1,OsMADS55, DLN163, OsDLN163,OsPME8,MADS34, OsMADS34, RMADS212/RMADS217/RMADS221, OsPAP2/MADS34, MADS34/PAP2, PAP2/OsMADS34, OsMADS34/PAP2, OsMADS19,PPR, OsPLS34,OsMADS6, MADS6, OsMFO1,OsMADS4, PI1, DLN140, OsDLN140,PPR,OsCYP94D7,OsCYP71AC1,OsUBP1-8, OsUBP33, UBP33,PPR,,,,HB2, OsHB2, OsNSHB2, hb2, GLB1b, ORYsa GLB1b, OsPgb1.2, Pgb1.2,,MADS3, OsMADS3, OsMADS3(t), RMADS222, RAG1, rf3,PPR,PPR,PPR,PPR,,,PPR,OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO, OsLHS1, OsLG3b, LG3b, qLGY3, LGY3, DLN80, OsDLN80, OLR, OsOLR, GW3p6, OsGW3p6, OsMADS1GW3p6, MADS1GW3p6, qLGY3/OsLG3b/GW3p6,OsMADS26, FDRMADS3, RMADS220,OsCYP704A5,OsMADS20,OsCYP704A3,OsMADS17, MADS17, NMADS3, RMADS213, nmads3,,OsMADS24, MADS8, OsMADS8, OsMADS8/24 ,PPR,,OsMADS21, RMADS207,,,OsCYP92A9, OsCYP71W6, CYP71W6,OsUBP1-5, OsUBP31, UBP31,OsCYP714B2,OsMADS7, OsMADS45, FDRMADS1, RMADS216, AGL6, M79, MADS45, Os MADS7, Os MADS45, OsMADS7/45,pla1, OsPLA1, plt1, CYP78A11,eui1, GA16,17ox, CYP714D1, EUI, CYP714D1/EUI, OsEUI, LG5, OsLG5,pdc1*, pdc1, pdc4, pdc 1, PDC 1, OsPDC1,OsMADS29, MADS29, OsFST,,DWF1, DIM/DWF1, DIM,,,,PPR,OsMADS32, MADS32, OsCFO1, CFO1/OsMADS32, TRI1, OsTRI1 , OsMADS32/CFO, CFO, OsCFO,,
45524	29885462	Du X., Wang H., He J., Zhu B., Guo J., Hou W., Weng Q., Zhang X.	Identification of nicotianamine synthase genes in Triticum monococcum and their expression under different Fe and Zn concentrations.	Gene	672	1-7	2018		
45525	29880691	Yu X., Zhao Z., Zheng X., Zhou J., Kong W., Wang P., Bai W., Zheng H., Zhang H., Li J., Liu J., Wang Q., Zhang L., Liu K., Yu Y., Guo X., Wang J., Lin Q., Wu F., Ren Y., Zhu S., Zhang X., Cheng Z., Lei C., Liu S., Liu X., Tian Y., Jiang L., Ge S., Wu C., Tao D., Wang H., Wan J.	A selfish genetic element confers non-Mendelian inheritance in rice.	Science	360(6393)	1130-1132	2018	_,_,_	qHMS7 ORF3, S23-ORF3 ,qHMS7 ORF1,qHMS7 ORF2
45526	29988452	Li H., Chen M., Duan L., Zhang T., Cao Y., Zhang Z.	Domain Swap Approach Reveals the Critical Roles of Different Domains of SYMRK in root nodule Symbiosis in <i>Lotus japonicus</i>.	Front Plant Sci	9	697	2018	SYMRK	OsSYMRK
45527	29925586	Ding Y., Gong S., Wang Y., Wang F., Bao H., Sun J., Cai C., Yi K., Chen Z., Zhu C.	MicroRNA166 Modulates Cadmium Tolerance and Accumulation in Rice.	Plant Physiol.	177(4)	1691-1703	2018	HMA2,HB4,GCC7	OsHMA2, osHMA2, OsHMA2v ,OSHB4, OsHox32, HOX32, OsHB4, Oshox32, PHB3, OsHDZ13, OsHDZIP13, HDZ13, HDZIP13,HMA3, OsHMA3, OsHMA3a, OsHMA3n, osHMA3, OsHMP34, HMP34
45528	29614441	Baiya S., Mahong B., Lee S.K., Jeon J.S., Ketudat Cairns JR.	Demonstration of monolignol beta-glucosidase activity of rice Os4BGlu14, Os4BGlu16 and Os4BGlu18 in Arabidopsis thaliana bglu45 mutant.	Plant Physiol. Biochem.	127	223-230	2018		
45529	29884124	Milner M.J., Howells R.M., Craze M., Bowden S., Graham N., Wallington E.J.	A PSTOL-like gene, TaPSTOL, controls a number of agronomically important traits in wheat.	BMC Plant Biol.	18(1)	115	2018		
45530	29614319	Guo Z., Yang W., Chang Y., Ma X., Tu H., Xiong F., Jiang N., Feng H., Huang C., Yang P., Zhao H., Chen G., Liu H., Luo L., Hu H., Liu Q., Xiong L.	Genome-Wide Association Studies of Image Traits Reveal Genetic Architecture of Drought Resistance in Rice.	Mol Plant	11(6)	789-805	2018	PP2C9,WRKY13,DREB2A	OsPP15, PP15, OsPP2C09, PP2C09, OsPP2C9, OsPP2C3,OsWRKY13,OsDREB2A, OsDREB2a, ERF40, OsERF#040, OsERF040, OsERF40, AP2/EREBP#167, AP2/EREBP167
45531	29953946	Ma J., Wang Y., Xu N., Jin L., Liu J., Xing S., Li X.	Potential large scale production of meningococcal vaccines by stable overexpression of fHbp in the rice seeds.	Protein Expr. Purif.	152	1-6	2018		
45532	29977247	James D., Borphukan B., Fartyal D., Ram B., Singh J., Manna M., Sheri V., Panditi V., Yadav R., Achary V.M.M., Reddy M.K.	Concurrent Overexpression of <i>OsGS1;1</i> and <i>OsGS2</i> Genes in Transgenic Rice (<i>Oryza sativa</i> L.): Impact on Tolerance to Abiotic Stresses.	Front Plant Sci	9	786	2018	GLN1;1,GS2	OsGLN1;1, GS1, RGS28, OsGS1;1, GS1;1, OsGS, GS1, OsGS1, GLN1-1, OsGS1-1, GS1-1, GS1.1, OsGS1.1,OsGS2, GLN2, OsGLN2, RGS31, OsRGS31
45533	29901843	Hong Y., Zhang Y., Sinumporn S., Yu N., Zhan X., Shen X., Chen D., Yu P., Wu W., Liu Q., Cao Z., Zhao C., Cheng S., Cao L.	Premature leaf senescence 3, encoding a methyltransferase, is required for melatonin biosynthesis in rice.	Plant J.			2018	SE1,TYDC,RCCR1,2ODD11,TDC1,HD2,HD5,ODD21,AMTR1,SL,BBX7,LLB,ASMT2,SNAT1,ASMT1,2ODD19,TDC2,HD3A	Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, OsHd1,  Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,TyDC, OsTyDC, OsTYDC, TDC, OsTDC3, TDC3, OsTDC1,OsRCCR1, OsRCCR, RCCR,OsODD11, ODD11, 2-ODD11, Os2-ODD11, 2ODD11, Os2ODD11, M3H, OsM3H,OsTDC, TDC, TDC2, OsTDC1, OsTDC4,Hd2(t), Hd2, qHD2(t), OsPRR37, Os-PRR37, PRR37, Prr4, OsPRR4, DTH7, Os DTH7, OsCCT28, CCT28, Ghd7.1, PRR37/Hd2, EH7-2, EH7-2/Hd2, Hd2/PRR37, PRR37-1a, PRR37-1b, PRR37-1c, PRR37-2a, PRR37- 2, HD7.2,Hd5(t)*, Hd5, qHD5, HAP3H, OsHAP3H, NF-YB, CBF-A, DTH8 , qHD5(t)*, Ghd8, Ghd8/DTH8, Lhd1, NF-YB11, OsNF-YB11, NFYB11, LH8, DTH8/Ghd8, RH8, DTH8/Ghd8/LHD1, CAR8, DTH8/Ghd8/ OsHAP3H, EF8, OsEF8,OsSTA135, STA135, OsODD21, 2-ODD21, Os2-ODD21, Os2ODD21, M2H, OsM2H, OsF3H5, F3H5,Osh36, OsH36, H36, OsAMTR1,OsSL, sl (spl1), sl*, sl, spl1, CYP71P1, Os CYP71P1, T5H, OsT5H, CYP71A1, OsCYP71A1, OsLLM1, LLM1, LLM1/OsSL, ELL1, OsELL1, ELL1/SL, OsT5H1,OsN, OsBBX7, OsCCT08, OsCCT8, OsDTH2, CCT08, CCT8, DTH2,OsLLB, LCMT, OsMTS1, MTS1, PLS3,ZRP4, OsASMT2, OsASMT15,OsSNAT1, OsSNAT, SNAT, OsGNAT2, GNAT2,ZRP4, OMT, ASMT, OsASMT, OsASMT1, ASMT1, OsASMT13, OsCOMT19, COMT19,OsODD19, ODD19, 2-ODD19, Os2-ODD19, Os2ODD19, OsF3H7, F3H7,OsTDC2, OsTDC3,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a 
45534	29980098	Mekawy A.M.M., Abdelaziz M.N., Ueda A.	Apigenin pretreatment enhances growth and salinity tolerance of rice seedlings.	Plant Physiol. Biochem.	130	94-104	2018		
45535	29701802	Qu X., Yan M., Zou J., Jiang M., Yang K., Le J.	A2-type cyclin is required for the asymmetric entry division in rice stomatal development.	J. Exp. Bot.	69(15)	3587-3599	2018	CDKB;1,CYCA2;1	CDKB;1, Orysa;CDKB;1, CDKB1;1, Orysa;CDKB1;1, OsCDKB1.1, CDKB1.1, OsCDKB1;1,CycA2;1, CycA2;os;1, Orysa;CycA2;1, OsCYCA2;1, CYCA2.2
45536	29893915	Chen N., Wang P., Li C., Wang Q., Pan J., Xiao F., Wang Y., Zhang K., Li C., Yang B., Sun C., Deng X.	A single nucleotide mutation of IspE gene participating in the MEP pathway for isoprenoid biosynthesis causes green-revertible yellow leaf phenotype in rice.	Plant Cell Physiol.			2018	DXR,_,PSBA,NAD2,NAD4,PSAN,GRY340,RBCS,HMGRIII,HMGRII,RBCL,CAB1R,LAS1,HDS,_,_,_,MCS,CAB2R,CMS,_,_	OsDXR, OsIspC, IspC,orfB, atp8 ,PsbA, psbA, OsPsbA, PSBD1, OsPSBD1, psbD1,nad2, OsNAD2,nad4, nadIV,psaN, OspsaN, PN, OsPN,OsCMK, CMK, OsIspE, IspE, OsGRY340, AL4, OsAL4,rbcS, OsRbcS, RBCS-C, RbcS2, OsRBCS2, RbcS1, OsRbcS2, OsrbcS1,HMGR III, OsHMGRIII, Hmg3, HMGR3, HMGR 3, OsHMGR3, HMGR2, OsHMGR2, OsOMT,HMGR II, OsHMGRII, Hmg2, HMGR2, HMGR 2, OsHMGR2, OsHMGR2, HMGR1, OsHMGR1,rbcL, rbcA, OsrbcL,cab1R, LHCP, CAB, OsLhcb1, Lhcb1, Cab1, OsCAB1, Lhcb1b, OsLhcb1b, CAB2R,HDR, OsHDR, OsIspH, IspH, OsHDR1, HDR1, OsLAS1, LAS1/OsHMBPP, OsHMBPP, HMBPP, OsIspH1, IspH1, YGL3, OsYGL3,OsHDS, OsIspG, IspG,atp6, N-atp6, B-ATP6, B-atp6, atp6-1,cob, cob-1, cob-like, cyt c,cox3, coxIII, cox3a, cox3b, cox3c,OsMCS, IspF, OsIspF, OsMDS, MDS,Oscab2R, CAB-2, OsLhcp, Lhcb1, Lhcb1a, OsLhcb1, OsLhcb1a ,OsCMS, OsIspD, IspD, OsMCT, MCT,cox2, coxII,coxI, COX1, cox1-1, cox1
45537	29465802	Chen M., Chen J., Luo N., Qu R., Guo Z., Lu S.	Cholesterol accumulation by suppression of SMT1 leads to dwarfism and improved drought tolerance in herbaceous plants.	Plant Cell Environ.	41(6)	1417-1426	2018	CNGC8,SMT1-3,ADSS,_,SMT1-2,SMT1-1,LRK7,SAMDC2,MYB48,TCF	OsCNGC8, OsCNGC6, CNGC6, OsCNGC9,OsSMT1-3,OsAdSS, AdSS, ASS2, OsASS2,OsSAHH, SAHH,OsSMT1-2,Ossmt1-1, OsSMT1-1,OsLRk7, LRk7,SamDC2, AdoMetDC2, OsSAMDC2,OsMYB48, OsMYB48-1, OsMYB48-2, OsMYB59, MYB59, Os2R_MYB19, 2R_MYB19 ,OsTCF
45538	30013584	Song J., Li J., Sun J., Hu T., Wu A., Liu S., Wang W., Ma D., Zhao M.	Genome-Wide Association Mapping for cold tolerance in a Core Collection of Rice (<i>Oryza sativa</i> L.) Landraces by Using High-Density Single Nucleotide Polymorphism Markers From Specific-Locus Amplified Fragment Sequencing.	Front Plant Sci	9	875	2018	_,_,SEH1,_,FTSH9,PP2C7,DREB1C	,OsPGL31, PGL31,OsWD40-19, WD40-19, OsSEH1,OsRH25, RH25,OsFtsH9, FtsH9, OsFtsH2, FtsH2,OsPP2C07, PP2C07, OsPP2C7, OsPP11, PP11,OsDREB1C, CBF1, ERF26, OsERF026, OsERF#026, OsERF26, AP2/EREBP#098, AP2/EREBP98, OsCBF2, CBF2
45539	29572657	Zeng D.D., Yang C.C., Qin R., Alamin M., Yue E.K., Jin X.L., Shi C.H.	A guanine insert in OsBBS1 leads to early leaf senescence and salt stress sensitivity in rice (Oryza sativa L.).	Plant Cell Rep.	37(6)	933-946	2018	BBS1,RMC,RCCR1,NYC3,NAC58,DOS,SALT,CDPK17	OsRLCK109, RLCK109, OsBBS1, OSBBS1/OsRLCK109, PTK4, PTK4/BBS1, OsPTK4,OsRMC, OsRLK, OsDUF26, DUF26, OsCBMIP, CBMIP, NCS, OsNCS, OsCRK5, CRK5,OsRCCR1, OsRCCR, RCCR,nyc3, OsNYC3, PPH,OsNAP, NAP, ONAC058, ONAC58, Os PS1, PS1, OsCTb1, CTb1,OsDOS, OsC3H2, C3H2, OsTZF2, OsCCCH-Zn-4,salT*(sal1), SalT1*, sal1, Sal1, SALT, ML, SalT, OsSalT, OsJRL, JRL, Osl43, OsL43, OsMBL1, MBL1, OsJRL01, JRL01, OsJRL1, JRL1,OsCDPK17, OsCPK17, CPK17, OsCPK17.1, OsCPK17.2, OsCPK17.3, OsCPK17.4, OsCPK17.5
45540	29775500	Du L., Xu F., Fang J., Gao S., Tang J., Fang S., Wang H., Tong H., Zhang F., Chu J., Wang G., Chu C.	Endosperm sugar accumulation caused by mutation of phs8/ISA1 leads to pre-harvest sprouting in rice.	Plant J.	95(3)	545-556	2018	PHS8,VP1,MFT2	ISA1, OsISA1, ISA, OsISA, PHS8/ISA1, OsPHS8, ISA I, OsISA I, ISAI, OsISAI,Vp1* (OSVP1), OsVP1, OsVp1, Vp1, ABI3, OsABI3, OsLFL4, OsVp-1, OSVP1,OsMFT2, OsMFT
45541	30100799	Peng D., Tan X., Zhang L., Yuan D., Lin J., Liu X., Jiang Y., Zhou B.	Increasing branch and seed yield through heterologous expression of the novel rice S-acyl transferase gene <i>OsPAT15</i> in <i>Brassica napus</i> L.	Breed. Sci.	68(3)	326-335	2018	DHHC1	OsDHHC1, OsPAT15, PAT15, OsDHHC06, DHHC06, OsDHHC6, DHHC6
45542	29951703	Liu J., Sun X., Xu F., Zhang Y., Zhang Q., Miao R., Zhang J., Liang J., Xu W.	Suppression of OsMDHAR4 enhances heat tolerance by mediating H2O2-induced stomatal closure in rice plants.	Rice (N Y)	11(1)	38	2018	MDHAR2	OsMDAR2, OsMDHAR2, MDAR2, OsMDHAR4, MDHAR4
45543	29546443	Xie K., Wu S., Li Z., Zhou Y., Zhang D., Dong Z., An X., Zhu T., Zhang S., Liu S., Li J., Wan X.	Map-based cloning and characterization of Zea mays male sterility33 (ZmMs33) gene, encoding a glycerol-3-phosphate acyltransferase.	Theor. Appl. Genet.	131(6)	1363-1378	2018		
45544	29770515	Dvorak J., Wang L., Zhu T., Jorgensen C.M., Deal K.R., Dai X., Dawson M.W., M?ller HG., Luo M.C., Ramasamy R.K., Dehghani H., Gu Y.Q., Gill B.S., Distelfeld A., Devos K.M., Qi P., You F.M., Gulick P.J., McGuire P.E.	Structural variation and rates of genome evolution in the grass family seen through comparison of sequences of genomes greatly differing in size.	Plant J.	95(3)	487-503	2018		
45545	29915329	Song S., Chen Y., Liu L., See Y.H.B., Mao C., Gan Y., Yu H.	OsFTIP7 determines auxin-mediated anther dehiscence in rice.	Nat Plants	4(7)	495-504	2018	OSH1,YUCCA4,FTIP7	OSKN1, Oskn1, OsKN1, OSH1/Oskn1, HB75,OsYUCCA4, OsYUC4, YUC4, YUCCA6, OsYUCCA6,OsFTIP7, OsC2DP44, C2DP44
45546	29971074	Chen Y., Qian J., You L., Zhang X., Jiao J., Liu Y., Zhao J.	Subunit Interaction Differences Between the Replication factor C Complexes in <i>Arabidopsis</i> and Rice.	Front Plant Sci	9	779	2018	RFC2,RFC1,RFC5,RFC4,RFC3	OsRFC2,OsRFC1,OsRFC5,OsRFC4,OsRFC3
45547	29943288	Zheng Y., Yan J., Wang S., Xu M., Huang K., Chen G., Ding Y.	Genome-wide identification of the Pectate lyase-like (PLL) gene family and functional analysis of two PLL genes in rice.	Mol. Genet. Genomics	293(6)	1317-1331	2018	_,DEL1,_,_,_,_,_,_,PSE1,_,_,PLL8	OsPLL2, PLL2,OsPLL12, PLL12,OsPLL3, PLL3,OsPLL10, PLL10,OsPLL11, PLL11,OsPLL7, PLL7,OsPLL5, PLL5,OsPLL6, PLL6,OsPSE1, OsPLL1, PLL1,OsPLL9, PLL9,OsPLL4, PLL4, OsPLL4.1, OsPLL4.2,OsPLL8
45548	29955063	Sun S., Wang T., Wang L., Li X., Jia Y., Liu C., Huang X., Xie W., Wang X.	Natural selection of a GSK3 determines rice mesocotyl domestication by coordinating strigolactone and brassinosteroid signaling.	Nat Commun	9(1)	2523	2018	D3,D11,BIN2,CYCU2;1,D2	d3, dwf3, D3/OsMAX2, Os_F0760, SOL1, OsORE9, ORE9, MAX2, OsRFPH2-10, RFPH2-10, OsD3,  OsFBL27, FBL27,d11(d8), dwf10, d8, D11/CYP724B1, d11, CYP724B1, GNS4, OsD11, PMM1, OsPMM1, PMM1/D11, NBG4, OsCPB1, CPB1, CPB1/D11,GSK2, Os GSK2, OsGSK2, Os BIN2, OsBIN2, BIN2/GSK2, OsSK22/OsGSK7, OsSK22, OsGSK7, SK22, GSK7, OsSK22/GSK2 ,CycU2;1, CycU2;os;1, Orysa;CycU2;1, OsCYCP3;1, CYC U2,d2, dwf2, CYP90D2, D2/CYP90D2, OsD2, SMG11, OsSMG11, D2/SMG11, OsD2a, OsD2b
45549	29569182	Zhong R., Cui D., Dasher R.L., Ye Z.H.	Biochemical characterization of rice xylan O-acetyltransferases.	Planta	247(6)	1489-1498	2018	XOAT11,XOAT13,XOAT3,XOAT10,XOAT7,XOAT6,XOAT14,XOAT4,XOAT2,XOAT1,XOAT9,XOAT8,XOAT12,XOAT5	OsTBL6, TBL6, OsXOAT11,OsTBL1, TBL1, OsXOAT13,OsTBL9, TBL9, OsXOAT3,OsTBL5, TBL5, OsXOAT10,OsTBL14, TBL14, OsXOAT7,OsTBL15, TBL15, OsXOAT6,OsTBL3, TBL3, OsXOAT14,OsTBL10, TBL10, OsXOAT4,OsTBL11, TBL11, OsXOAT2,OsTBL12, TBL12, OsXOAT1,OsTBL4, TBL4, OsXOAT9,OsTBL8, TBL8, OsXOAT8,OsTBL2, TBL2, OsXOAT12,OsTBL13, TBL13, OsXOAT5
45550	29947463	He Y., Cheng J., He Y., Yang B., Cheng Y., Yang C., Zhang H., Wang Z.	Influence of Isopropylmalate synthase OsIPMS1 on seed vigour associated with amino acid and energy metabolism in rice.	Plant Biotechnol. J.			2018	IPMS1,IPMS2	OsIPMS1,OsIPMS2
45551	29878383	Hu L., Ye M., Kuai P., Ye M., Erb M., Lou Y.	OsLRR-RLK1, an early responsive leucine-rich repeat receptor-like kinase, initiates rice defense responses against a chewing herbivore.	New Phytol.	219(3)	1097-1111	2018	WRKY24,LRR-RLK1,ACS2,_,MSRMK2,WRKY45,WRKY53,SMG1,WRKY70,WRKY30,ICS1,AOS1,DSG1,WRKY81	OsWRKY24,OsLRR-RLK1, OsPSKR12, PSKR12,OsACS2, Os-ACS2,Lox2:Os:1, OsLOX9, LOX9, OsLOX8, LOX8, OsLOX2, LOX2, OsRLL, OsHI-LOX, HI-LOX, RLL2 LOX, RLL2, Lox2osPil, OsLOX2;1, LOX2;1, OsLOX1, OsLOX7, LOX7,OsMSRMK2, OsMAPK5, OsMAP1, OsMPK3, OsBIMK1, OsMAPK2, MPK5, BIMK1, MAPK2, MAPK5, MPK3, OsMPK5, OsMAPK3, OsMAPK5b, MAPK3,OsWRKY45, OsWRKY45-1, OsWRKY45-2, WRKY45-1, WRKY45-2,OsWRKY53, WRKY-53,OsMKK4, MKK4, OsMKK4/SMG1, OsMAPKK4, MAPKK4, OsMEK4, MEK4, OsSMG1, SMG1/OsMEK6, OsMEK6, MEK6, OsSTS, STS,OsWRKY70,OsWRKY30,OsICS1, OsICS, ICS,OsAOS, OsAOS1, CYP74A1, OsAOS2, AOS2,OsMAPK6, MAPK6, OsMPK6, OsSIPK, SIPK, OsMAPK1, MAPK1, MPK1, OsMPK1, MPK6, OsDSG1,OsWRKY81, OsWRKY33
45552	29936261	Laura B., Silvia P., Francesca F., Benedetta S., Carla C.	Epigenetic control of defense genes following MeJA-induced priming in rice (O. sativa).	J. Plant Physiol.	228	166-177	2018	RBBI3-3,POX22.3	RBBI3-3, OsBBPI, BBPI, IBP1.2, OsIBP1.2, OsBBTI5, BBTI5,POX22.3, OSPER, OsPOX, POX, Pir3, prx111, POX22, OsPOX1, POX1, OsPOX22.3, OsPR9, PR9
45553	29785641	Mani A., Sankaranarayanan K.	In Silico Analysis of Natural Resistance-Associated Macrophage Protein (NRAMP) Family of Transporters in Rice.	Protein J.	37(3)	237-247	2018	LCD1,NRAMP6,NRAMP1,NRAMP3,NRAMP7,NRAMP4,NRAMP2	NRAMP5, OsNRAMP5, OsNramp5, OsLCD1,OsNRAMP6, Nramp6, l-NRAMP6, s-NRAMP6, OsNramp6.8, OsNramp1,OsNramp1, OsNRAMP1, OsNramp6,OsNramp3, OsNRAMP3,OsNRAMP7,OsNRAMP4, Nrat1, Nramp6, OsNRAT1, NRAT1, FCO5,OsNramp2, OsNRAMP2
45554	29365136	Jiang D., Chen W., Dong J., Li J., Yang F., Wu Z., Zhou H., Wang W., Zhuang C.	Overexpression of miR164b-resistant OsNAC2 improves plant architecture and grain yield in rice.	J. Exp. Bot.	69(7)	1533-1543	2018	DEP1,HD5,MIR164B,WFP,GHD7,TIL1	OsDEP1, EP, qPE9-1, DN1, DEP1/DN1/qPE9-1, qNGR9, qDEP1, RGG4/DEP1/DN1/qPE9-1/OsGGC3, RGG4, OsDN1, OsGGC3, GGC3,Hd5(t)*, Hd5, qHD5, HAP3H, OsHAP3H, NF-YB, CBF-A, DTH8 , qHD5(t)*, Ghd8, Ghd8/DTH8, Lhd1, NF-YB11, OsNF-YB11, NFYB11, LH8, DTH8/Ghd8, RH8, DTH8/Ghd8/LHD1, CAR8, DTH8/Ghd8/ OsHAP3H, EF8, OsEF8,miR164b, osa-miR164b,OsSPL14, SPL14, IPA1, WFP/IPA1, OsSPL14/WFP/IPA1, OsIPA1,  IPA1/OsSPL14,Ghd2, Ghd7, OsGhd7, OsCCT26, OsCMF8, OsI, Ghd7/Hd4, Hd4, EH7-1/Hd4, Ghd7-0a, EH7-1, EH7/Ghd7, EH7, OsEH7, GLW7.1, OsGLW7.1,NAC2, OsNAC2, ONAC004, ONAC4, ONAC034, ONAC34, ONAC058, ONAC58, OMTN2, Ostil1, OsNAC2/ONAC004, OsORE1.2, DLN113, OsDLN113
45555	29566032	Yang W.T., Baek D., Yun D.J., Lee K.S., Hong S.Y., Bae K.D., Chung Y.S., Kwon Y.S., Kim D.H., Jung K.H., Kim D.H.	Rice OsMYB5P improves plant phosphate acquisition by regulation of phosphate transporter.	PLoS ONE	13(3)	e0194628	2018	PT5,MYB30	OsPT5, OsPht1;5, Pht1;5, PHT1-5,OsMYB30, OsMYB5P, MYB5P, OsMYB13a, MYB13a, Os2R_MYB26, 2R_MYB26, OsMYB30C, MYB30C
45556	29614396	Han C.S., Kim S., Lee S.E., Choi S., Kim S.H., Yoon I.S., Hwang Y.S.	Cross-talk between ABA and sugar signaling is mediated by the ACGT core and CE1 element reciprocally in OsTIP3;1 promoter.	J. Plant Physiol.	224-225	103-111			
45557	29577692	Wang Y., Jia P., Li X., Li Y., Chen P.	[Cloning of Oryza sativa N-glycanase gene (OsPNGase A) and its expression in Pichia pastoris].	Sheng Wu Gong Cheng Xue Bao	34(3)	421-428	2018		
45558	29616055	Zhao Y., Zhao W., Jiang C., Wang X., Xiong H., Todorovska E.G., Yin Z., Chen Y., Wang X., Xie J., Pan Y., Rashid M.A.R., Zhang H., Li J., Li Z.	Genetic Architecture and Candidate Genes for Deep-Sowing Tolerance in Rice Revealed by Non-Syn GWAS.	Front Plant Sci	9	332	2018	ML1,ML2	OsML1,OsML2
45559	29588443	Zhao D.S., Li Q.F., Zhang C.Q., Zhang C., Yang Q.Q., Pan L.X., Ren X.Y., Lu J., Gu M.H., Liu Q.Q.	gs9 acts as a transcriptional activator to regulate rice grain shape and appearance quality.	Nat Commun	9(1)	1240	2018	BIN2,H1,CYCB2;2,CDC2-1,CYCB1;1,GS9,CDKB2;1 ,_,_,MAD2	GSK2, Os GSK2, OsGSK2, Os BIN2, OsBIN2, BIN2/GSK2, OsSK22/OsGSK7, OsSK22, OsGSK7, SK22, GSK7, OsSK22/GSK2 ,OsH1, OsHis1.1, His1.1,cycB2;2 (=cycOs2), cycB2;2, cycOs2, CycB2;2, CycOs2, CYCB2-2, CYCOS2, CycB2-Os2, CYCB2, CycB2;os;2, OsCycB2;2, Orysa;CycB2;2, OsCYCOS2, Os;cycB2;2, CYCB2.2, OsCYCB2.2,cdc2Os-1, CDC2Os-1, CDKA-1, CDKA;1, Orysa;CDKA;1, OsCDKA;1, cdc2Os1, Rcdc2-1, OsCDKA1, CDKA1, CDC20S-1, OsCDC20S-1 ,CycB1;1, CycB1;os;1, Orysa;CycB1;1, OsCycB1;1, CyclaZm, CYCIaZm, OsCYCIaZm, OsCYCB1;4,,Orysa;CDKB2;1, OsCDKB2;1, cdc2Os3, Oscdc20s-3, cdc20s-3, Orysa;CDKB;2, CYCB2.1, CDKB-2, OsCDKB-2,OsOFP30, OsOFP08, OsOFP8, OFP8, OFP30,OsOFP10, OsOFP14, OFP10, OFP14,OsMAD2
45560	29373713	Ma J., Chen J., Wang M., Ren Y., Wang S., Lei C., Cheng Z., Sodmergen	Corrigendum: Disruption of OsSEC3A increases the content of salicylic acid and induces plant defense responses in rice.	J. Exp. Bot.	69(7)	1817	2018		
45561	29614397	Boonpa K., Tantong S., Weerawanich K., Panpetch P., Pringsulaka O., Yingchutrakul Y., Roytrakul S., Sirikantaramas S.	Heterologous expression and antimicrobial activity of OsGASR3 from rice (Oryza sativa L.).	J. Plant Physiol.	224-225	95-102			
45562	29597290	Verma J.K., Wardhan V., Singh D., Chakraborty S., Chakraborty N.	Genome-Wide Identification of the Alba Gene Family in Plants and Stress-Responsive Expression of the Rice Alba Genes.	Genes (Basel)	9(4)		2018	ALBA5,ALBA3,ALBA1,ALBA8,ALBA7,ALBA4,ALBA6,ALBA2,ALBA9	OsAlba5, Alba5,OsAlba3, Alba3, NABP, OsNABP,OsAlba1, Alba1,OsAlba8, Alba8,OsAlba7, Alba7,OsAlba4, Alba4,OsAlba6, Alba6,OsAlba2, Alba2,OsAlba9, Alba9
45563	29548275	He H., Yang Q., Shen B., Zhang S., Peng X.	OsNOA1 functions in a threshold-dependent manner to regulate chloroplast proteins in rice at lower temperatures.	BMC Plant Biol.	18(1)	44	2018	NOA1	OsNOA1
45564	29562647	Chaiwong N., Prom-U-Thai C., Bouain N., Lacombe B., Rouached H.	Individual versus Combinatorial Effects of Silicon, Phosphate, and Iron Deficiency on the Growth of Lowland and Upland Rice Varieties.	Int J Mol Sci	19(3)		2018	PHO1;2	OsPHO1;2, PHO1.2, OsPHO1.2, PHO1
45565	29558477	Kim Y., Mun B.G., Khan A.L., Waqas M., Kim H.H., Shahzad R., Imran M., Yun B.W., Lee I.J.	Regulation of reactive oxygen and nitrogen species by salicylic acid in rice plants under salinity stress conditions.	PLoS ONE	13(3)	e0192650	2018	CATA,GSNOR1,APX1	CATA1, Cat A1*, OSCAT-A, Cat2, CatA1, CAT-A, OsCatA, OsCAT, CAT, catA, OSCATA, OsCATc, OsCATA, OsCAT1A, CAT1, OsCAT1, OsCATC, OsCAT2,OsGSNOR, GSNOR, OsGSNOR1,OsAPX1, APXa, OsAPXa, OsAPx01, OsAPx1, OSAPX1, APx1, cAPX, APX2, cAPXa, OscAPXa
45566	29574487	Theerawitaya C., Yamada-Kato N., Singh H.P., Cha-Um S., Takabe T.	Isolation, expression, and functional analysis of developmentally regulated plasma membrane polypeptide 1 (DREPP1) in Sporobolus virginicus grown under alkali salt stress.	Protoplasma	255(5)	1423-1432	2018		
45567	29547864	Cao Z.Z., Qin M.L., Lin X.Y., Zhu Z.W., Chen M.X.	Sulfur supply reduces cadmium uptake and translocation in rice grains (Oryza sativa L.) by enhancing iron plaque formation, cadmium chelation and vacuolar sequestration.	Environ. Pollut.	238	76-84	2018		
45568	29494624	Santos FICD., Marini N., Santos R.S.D., Hoffman B.S.F., Alves-Ferreira M., de Oliveira AC.	Selection and testing of reference genes for accurate RT-qPCR in rice seedlings under iron toxicity.	PLoS ONE	13(3)	e0193418	2018	_,RFA4,_,C3H3,GAPC2	,rfa4*, REFA4, refa4, eEF-1a, OsEF-1a, OsEF1A, EF1A, eIF-1-alpha,OsNABP, NABP,OsC3H3,GAPDH, OsGAPDH, OsGapC2
45569	29497052	Kim S.R., Ramos J.M., Hizon R.J.M., Ashikari M., Virk P.S., Torres E.A., Nissila E., Jena K.K.	Introgression of a functional epigenetic OsSPL14WFP allele into elite indica rice genomes greatly improved panicle traits and grain yield.	Sci Rep	8(1)	3833	2018	WFP,GN1A	OsSPL14, SPL14, IPA1, WFP/IPA1, OsSPL14/WFP/IPA1, OsIPA1,  IPA1/OsSPL14,Gn1a, OsCKX2, CKX2, ckx2, Gn1a/OsCKX2, Os CKX2, CKX2/Gn1a
45570	29497084	Filipe O., De Vleesschauwer D., Haeck A., Demeestere K., H?fte M.	The energy sensor OsSnRK1a confers broad-spectrum disease resistance in rice.	Sci Rep	8(1)	3864	2018	PR10A,WRKY45,JIOSPR10,SH11,AOS2,PAL1,OSK1,WRKY62,PR1B	PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsWRKY45, OsWRKY45-1, OsWRKY45-2, WRKY45-1, WRKY45-2,JIOsPR10, OsPR10, PR10, OsJiPR10, JiPR10, OsPR10c, PR10c,OsJAmyb, JAmyb, OsJAMyb, OsMYB21, MYB21, Os2R_MYB91, 2R_MYB91, OgSH11, OsSH11,OsAOS2, CYP74A2, OsAOS, OsAOS1,OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6,osk1, SnRK1A, OsSnRK1A, OsSNRK1a, SnRK1A/OSK1, SnRK1a, OsSnRK1.2, SnRK1.2, OsSnRK1alphaA, SnRK1alphaA,OsWRKY62, OsWRKY62.1, OsWRKY62.2, XB10, OsWRKY62-1, OsWRKY62-2,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1, OsPR1a, PR1a
45571	29272542	Zhu X., Shen W., Huang J., Zhang T., Zhang X., Cui Y., Sang X., Ling Y., Li Y., Wang N., Zhao F., Zhang C., Yang Z., He G.	Mutation of the OsSAC1 Gene, which Encodes an Endoplasmic Reticulum Protein with an Unknown Function, Causes Sugar Accumulation in Rice Leaves.	Plant Cell Physiol.	59(3)	487-499	2018	XA41,SPS11,AGPS1,TPT2,TPT1,SPS1,MT,PHO1,CFBP2,GSD1,AGPL3,SAC1,SUT2,XA13,SUT1,MOC2	OsSWEET14, SWEET14, Os11N3, Os-11N3, 11N3, Xa41(t), xa41, Os11N3/SWEET14, OsSWEET14/Os11N3,sps11, OsSPS11, OsSPS5, SPS5,OsAGPS1, APS1, OsAPS1, AGPsma,OsTPT2,OsTPT1, TPT, tpt,sps1, OsSPS1, SPS,OsMT, OsMEX1, MEX1,Pho1, OsPho1, OsPHOL, PHOL, OsPHOI, PHOI,OscFBP2, cFBP2,OsREM6.6, REM6.6, OsGSD1,OsAGPL3, APL3, OsAPL3, AGPlar, OsAGPL1, AGPL1,OsSAC1,OsSUT2(t), SUT2M, OsSUT2, OsSUT2M, OsSUT5,xa13, Xa13, Os8N3, Os-8N3, 8N3, OsSWEET11, SWEET11, OsSWEET11/Xa13, Xa13/Os8N3/SWEET11, Os8N3/Xa13, OsSWEET11/Os8N3, OsSWEET11a, SWEET11a,OsSUT1, OsSUT2,FR, OsFR, FBP1, OsFBP1, OsMOC2, OscFBP1, cFBP1, MOC2/FBP1
45572	29361060	Park Y.C., Chapagain S., Jang C.S.	A Negative Regulator in Response to Salinity in Rice: Oryza sativa Salt-, ABA- and Drought-Induced RING Finger Protein 1 (OsSADR1).	Plant Cell Physiol.	59(3)	575-589	2018	GRAS46,PRN,SADR1,NAC6	OsGRAS44, OsGRAS-44, GRAS-44, GRAS44, OsGRAS-46, OsGRAS46, GRAS-46,OsPRN,OsRFP, OsSADR1, OsSADRI, SADRI,  OsRING105, RING105,OsNAC6, ONAC048, NAC48, SNAC2, SNAC2/OsNAC6, OsNAC6/ONAC048, OsSNAC2, SNAC-2, OsSNAC-2, OsNAC2
45573	29401229	Kaneko-Suzuki M., Kurihara-Ishikawa R., Okushita-Terakawa C., Kojima C., Nagano-Fujiwara M., Ohki I., Tsuji H., Shimamoto K., Taoka K.I.	TFL1-Like Proteins in Rice Antagonize Rice FT-Like Protein in Inflorescence Development by Competition for Complex Formation with 14-3-3 and FD.	Plant Cell Physiol.	59(3)	458-468	2018	BZIP77,GF14C,RCN2,GF14F,GF14B,GID2,RCN4,RCN3,RAP1A,HD3A	OsbZIP77, OsFD1, FD1,GF14c, OsGF14c, 14-3-3c,Rcn2, OsRCN2,GF14f, SR14-3-3, OsGF14f, S94, ric1, 14-3-3f,GF14b, OsGF14b, 14-3-3b,gid2, GF14e, OsGF14e, OsGID2, 14-3-3e,Rcn4, OsRCN4,Rcn3, OsRCN3, RCN3/FDR1, FDR1, Fdr1, OsFDR1,OsMADS15, FDRMADS3, RMADS215, MADS15, DEP,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a 
45574	29892794	Kim S.H., Woo O.G., Jang H., Lee J.H.	Characterization and comparative expression analysis of CUL1 genes in rice.	Genes Genomics	40(3)	233-241	2018	CUL1-3,CUL1-2	OsCUL1-3,OsCUL1-2
45575	29593766	Shim J.S., Oh N., Chung P.J., Kim Y.S., Choi Y.D., Kim J.K.	Overexpression of <i>OsNAC14</i> Improves drought tolerance in Rice.	Front Plant Sci	9	310	2018	PIZT,CYP71Z2,DHN1,_,_,RBCS,NAC14,WRKY50,ILL8,WSI18,ERF101,COLD11,XA39,_,CCD8A,CIPK33,_,_,_,_,_,AGP29,_,_,RLCK66	Piz-t, Pi-zt, Pi-z(t), Pi2/Pizt, Pizt, Pi9, OsPiz-t,Oscyp71Z2,LIP9, OsLIP9, lip9, DHN1, DIP1, OsDip1, OsLEA23, OsDhn1, COR410, OsLEA23/DIP1, DIP1/OsLEA23,OsFbox341, Fbox341, Os_F0215,  OsFBL34, FBL34,OsTPS10, TPS10, TPS36, OsTPS36,rbcS, OsRbcS, RBCS-C, RbcS2, OsRBCS2, RbcS1, OsRbcS2, OsrbcS1,ONAC014, ONAC14, OsNAC14, NAC14, OsNAC68, NAC68,OsWRKY50,OsILL8, OsAH4, AH4,OsLEA14, OsLEA14a, OsLEA14b, wsi18, pwsi18, OsWsi18, OsLEA14/WSI18,OsERF#101, OsERF101, OsDERF6, DERF6, AP2/EREBP#089, AP2/EREBP89, OsRap2.6, Rap2.6, ERF113, OsERF113, OsERF101/OsRAP2.6,OsRAD51A1, RAD51A1, OsCOLD11,Xa39, OsRGA5-L2, RGA5-L2, OsRGA5L2, RGA5L2,OsPAE1, PAE1,OsCCD8a, OsCCD8c, CCD8a, CCD8c,OsCIPK33, OsSnRK3.32, SnRK3.32,OsiWAK1, WAK1,OsIAS, OsOSC11, IAS, OSC11,,HSR201,OsPDR20, RDR20,OsAGP29,OsMSH4, MSH4,OsSTA127, STA127,OsRLCK66
45576	29559992	Zhu C.Q., Zhang J.H., Sun L.M., Zhu L.F., Abliz B., Hu W.J., Zhong C., Bai Z.G., Sajid H., Cao X.C., Jin Q.Y.	Hydrogen Sulfide Alleviates Aluminum Toxicity via Decreasing Apoplast and Symplast Al Contents in Rice.	Front Plant Sci	9	294	2018	STAR1,NRAMP4,ALS1,STAR2,FRDL4	OsENA2, OsABCI12, ENA2, ABCI12, OsSTAR1, OsSATR1,OsNRAMP4, Nrat1, Nramp6, OsNRAT1, NRAT1, FCO5,OsALS1, OsABCB25, ABCB25,OsSTAR2, OsSATR2,OsFRDL4, MATE
45577	29511223	Soda N., Gupta B.K., Anwar K., Sharan A., Govindjee, Singla-Pareek SL., Pareek A.	Rice intermediate filament, OsIF, stabilizes photosynthetic machinery and yield under salinity and heat stress.	Sci Rep	8(1)	4072	2018	IF	OsIFL, IFL, OsIF
45578	29568307	Huang W., Bai G., Wang J., Zhu W., Zeng Q., Lu K., Sun S., Fang Z.	Two Splicing Variants of <i>OsNPF7.7</i> Regulate shoot branching and Nitrogen Utilization Efficiency in Rice.	Front Plant Sci	9	300	2018	NPF6.5,_,D3,AMT1;3,FC1,_,GLN1;2	OsNRT1.1B, NRT1.1B, OsNPF6.5,OsPTR10, PTR10, OsNPF7.7, NPF7.7, OsNPF7.7-1, OsNPF7.7-2,d3, dwf3, D3/OsMAX2, Os_F0760, SOL1, OsORE9, ORE9, MAX2, OsRFPH2-10, RFPH2-10, OsD3,  OsFBL27, FBL27,OsAMT1;3, AMT1-3, Osamt1-2, "OsAMT1,2", OsAMT1;2, OsAMT1.3, AMT1.2,fc1, OsTB1, tb1, OsTB1/FC1, Os TB1, TB1, OsFC1, MP3, OsMP3,OsNIA1, OsNia1, NIA1, Nia1, OsNR, NR, OsNR2, NR2, NIA2,OsGLN1;2, GSr, RGS8, OsGS1;2, GS1;2, GS1, OsGS1-2, GS1-2, OsGS1.2, GS1.2
45579	29718461	Callens C., Tucker M.R., Zhang D., Wilson Z.A.	Dissecting the role of MADS-box genes in monocot floral development and diversity.	J. Exp. Bot.	69(10)	2435-2459	2018		
45580	29616502	Ye J., Yang Y.L., Wei X.H., Niu X.J., Wang S., Xu Q., Yuan X.P., Yu H.Y., Wang Y.P., Feng Y., Wang S.	PGL3 is required for chlorophyll synthesis and impacts leaf senescence in rice.	J Zhejiang Univ Sci B	19(4)	263-273		_,DVR,AMTR1,CATB,PORA,APX2,YGL9	prx41, OsPrx41, OsPOX8.1, POX8.1, OsPOD2, POD2,OsDVR,Osh36, OsH36, H36, OsAMTR1,CatB, CAT-B, OsCatB, OsCATB, OsCAT1B, CAT1B, CAT2, OsCAT2,OsPorA, OsPORA,OsAPX2, OsAPx02, APXb, OsAPx2, OSAPX2, APx2, cAPX, OsAPX1, APX1,OscpSRP43, cpSRP43, PGL3, OsPGL3, Os YGL9
45581	29686055	Salem M.A., Li Y., Bajdzienko K., Fisahn J., Watanabe M., Hoefgen R., Sch?ttler MA., Giavalisco P.	RAPTOR Controls Developmental Growth Transitions by Altering the Hormonal and Metabolic Balance.	Plant Physiol.	177(2)	565-593	2018		
45582	29708601	Tamim S., Cai Z., Mathioni S.M., Zhai J., Teng C., Zhang Q., Meyers B.C.	Cis-directed cleavage and nonstoichiometric abundances of 21-nucleotide reproductive phased small interfering RNAs in grasses.	New Phytol.	220(3)	865-877	2018		
45583	29607549	Hwang O.J., Back K.	Melatonin is involved in skotomorphogenesis by regulating brassinosteroid biosynthesis in rice plants.	J. Pineal Res.	65(2)	e12495	2018		
45584	29644569	Jiang H., Hu J., Li Z., Liu J., Gao G., Zhang Q., Xiao J., He Y.	Evaluation and breeding application of six brown planthopper resistance genes in rice maintainer line Jin 23B.	Rice (N Y)	11(1)	22	2018		
45585	29508613	Han B., Yang N., Pu H., Wang T.	Quantitative Proteomics and Cytology of Rice pollen Sterol-Rich Membrane Domains Reveals Pre-established Cell Polarity Cues in Mature pollen.	J. Proteome Res.	17(4)	1532-1546	2018		
45586	29695843	Naveed S.A., Zhang F., Zhang J., Zheng T.Q., Meng L.J., Pang Y.L., Xu J.L., Li Z.K.	Identification of QTN and candidate genes for Salinity Tolerance at the Germination and Seedling Stages in Rice by Genome-Wide Association Analyses.	Sci Rep	8(1)	6505	2018		
45587	29678154	Uga Y., Assaranurak I., Kitomi Y., Larson B.G., Craft E.J., Shaff J.E., McCouch S.R., Kochian L.V.	Genomic regions responsible for seminal and crown root lengths identified by 2D & 3D root system image analysis.	BMC Genomics	19(1)	273	2018		
45588	29731679	Hwang S.N., Kim J.C., Bhuiyan M.I.H., Kim J.Y., Yang J.S., Yoon S.H., Yoon K.D., Kim S.Y.	Black Rice (<i>Oryza sativa L</i>., Poaceae) Extract Reduces Hippocampal Neuronal Cell Death Induced by Transient Global Cerebral Ischemia in Mice.	Exp Neurobiol	27(2)	129-138	2018		
45589	30047109	Wang J., Long Y., Zhang J., Xue M., Huang G., Huang K., Yuan Q., Pei X.	Combined analysis and miRNA expression profiles of the flowering related genes in common wild rice (oryza rufipogon Griff.).	Genes Genomics	40(8)	835-845	2018		
45590	29567670	Shimano S., Hibara K.I., Furuya T., Arimura S.I., Tsukaya H., Itoh J.I.	Conserved functional control, but distinct regulation, of cell proliferation in rice and <i>Arabidopsis</i> leaves revealed by comparative analysis of <i>GRF-INTERACTING FACTOR 1</i> orthologs.	Development	145(7)		2018	GIF3	OsGIF3, OsGIF1, GIF1, MKB3
45591	29300919	Jamil M., Kountche B.A., Haider I., Guo X., Ntui V.O., Jia K.P., Ali S., Hameed U.S., Nakamura H., Lyu Y., Jiang K., Hirabayashi K., Tanokura M., Arold S.T., Asami T., Al-Babili S.	Methyl phenlactonoates are efficient strigolactone analogs with simple structure.	J. Exp. Bot.	69(9)	2319-2331	2018		
45592	29875602	Busungu C., Taura S., Sakagami J.I., Anai T., Ichitani K.	High-resolution mapping and characterization of <i>XA42</i>, a resistance gene against multiple <i>Xanthomonas oryzae</i> pv. <i>oryzae</i> races in rice (<i>Oryza sativa</i> L.).	Breed. Sci.	68(2)	188-199	2018	XA42	xa42
45593	29656028	Wu Y., Lee S.K., Yoo Y., Wei J., Kwon S.Y., Lee S.W., Jeon J.S., An G.	Rice Transcription Factor OsDOF11 Modulates Sugar Transport by Promoting Expression of Sucrose Transporter and SWEET Genes.	Mol Plant	11(6)	833-845	2018	SWEET15,SUT3,XA41,SUT5,SWEET12,SUT1,XA13,SUT4,SWEET13,DOF7	OsSWEET15,OsSUT3(t), OsSUT3, SUC3, OsSUT2,OsSWEET14, SWEET14, Os11N3, Os-11N3, 11N3, Xa41(t), xa41, Os11N3/SWEET14, OsSWEET14/Os11N3,OsSUT5(t), OsSUT5Z, OsSUT5,OsSWEET12,OsSUT1, OsSUT2,xa13, Xa13, Os8N3, Os-8N3, 8N3, OsSWEET11, SWEET11, OsSWEET11/Xa13, Xa13/Os8N3/SWEET11, Os8N3/Xa13, OsSWEET11/Os8N3, OsSWEET11a, SWEET11a,OsSUT4(t), OsSUT4,OsSWEET13, Xa25(t), Xa25, OsMtN3, Xa25/SWEET13, OsSWEET13/XA25,OsDof7, Dof7, OsDof-7, OsDOF11, DOF11, OsDof9, Dof9
45594	29652669	Ansary W.R., Prince F.R.K., Haque E., Sultana F., West H.M., Rahman M., Mondol A.M., Akanda A.M., Rahman M., Clarke M.L., Islam T.	Endophytic Bacillus spp. from medicinal plants inhibit mycelial growth of Sclerotinia sclerotiorum and promote plant growth.	Z. Naturforsch., C, J. Biosci.	73(5-6)	247-256	2018		
45595	29654242	Dalal V.K., Tripathy B.C.	Water-stress induced downsizing of light-harvesting antenna complex protects developing rice seedlings from photo-oxidative damage.	Sci Rep	8(1)	5955	2018		
45596	29723825	Gazquez A., Vilas J.M., Colman Lerner JE., Maiale S.J., Calzadilla P.I., Men?ndez AB., Rodr?guez AA.	Rice tolerance to suboptimal low temperatures relies on the maintenance of the photosynthetic capacity.	Plant Physiol. Biochem.	127	537-552	2018		
45597	29604159	Macovei A., Sevilla N.R., Cantos C., Jonson G.B., Slamet-Loedin I., ?erm?k T., Voytas D.F., Choi I.R., Chadha-Mohanty P.	Novel alleles of rice eIF4G generated by CRISPR/Cas9-targeted mutagenesis confer resistance to Rice tungro spherical virus.	Plant Biotechnol. J.	16(11)	1918-1927	2018		
45598	29679176	He F., Zhang F., Sun W., Ning Y., Wang G.L.	A Versatile Vector Toolkit for Functional Analysis of Rice Genes.	Rice (N Y)	11(1)	27	2018		
45599	29658119	Zhong Y., Wang Y., Guo J., Zhu X., Shi J., He Q., Liu Y., Wu Y., Zhang L., Lv Q., Mao C.	Rice SPX6 negatively regulates the phosphate starvation response through suppression of the transcription factor PHR2.	New Phytol.	219(1)	135-148	2018	IPS1,SPX5,SPX6,PHR2,PT2,SPX3,SPX2	OsIPS1,OsSPX5,OsSPX6,OsPHR2, Os-PHR2,OsPT2, PTH1-2, OsPht1;2, PHT1;2, OsPHT1;2,OsSPX3,OsSPX2
45600	29642464	Turrini F., Boggia R., Leardi R., Borriello M., Zunin P.	Optimization of the Ultrasonic-Assisted Extraction of Phenolic Compounds from Oryza Sativa L. 'Violet Nori' and Determination of the Antioxidant Properties of its Caryopses and Leaves.	Molecules	23(4)		2018		
45601	29713381	Liu W., Mazarei M., Ye R., Peng Y., Shao Y., Baxter H.L., Sykes R.W., Turner G.B., Davis M.F., Wang Z.Y., Dixon R.A., Stewart C.N.	Switchgrass (<i>Panicum virgatum</i> L.) promoters for green tissue-specific expression of the <i>MYB4</i> transcription factor for reduced-recalcitrance transgenic switchgrass.	Biotechnol Biofuels	11	122	2018		
45602	29740464	Zhang T., Li R., Xing J., Yan L., Wang R., Zhao Y.	The YUCCA-Auxin-WOX11 Module Controls crown root Development in Rice.	Front Plant Sci	9	523	2018		
45603	29704477	Saini S., Kaur N., Pati P.K.	Reactive oxygen species dynamics in roots of salt sensitive and salt tolerant cultivars of rice.	Anal. Biochem.	550	99-108	2018		
45604	29684018	Yasui Y., Ohmori Y., Takebayashi Y., Sakakibara H., Hirano H.Y.	WUSCHEL-RELATED HOMEOBOX4 acts as a key regulator in early leaf development in rice.	PLoS Genet.	14(4)	e1007365	2018		
45605	29715631	Geng A., Wang X., Wu L., Wang F., Wu Z., Yang H., Chen Y., Wen D., Liu X.	Silicon improves growth and alleviates oxidative stress in rice seedlings (Oryza sativa L.) by strengthening antioxidant defense and enhancing protein metabolism under arsanilic acid exposure.	Ecotoxicol. Environ. Saf.	158	266-273	2018		
45606	29633040	Vanavichit A., Kamolsukyeunyong W., Siangliw M., Siangliw J.L., Traprab S., Ruengphayak S., Chaichoompu E., Saensuk C., Phuvanartnarubal E., Toojinda T., Tragoonrung S.	Thai Hom Mali Rice: Origin and Breeding for Subsistence Rainfed Lowland Rice System.	Rice (N Y)	11(1)	20	2018		
45607	29553800	Wang B., Smith S.M., Li J.	Genetic Regulation of Shoot Architecture.	Annu Rev Plant Biol	69	437-468	2018		
45608	29875612	Wada T., Yamaguchi O., Miyazaki M., Miyahara K., Ishibashi M., Aihara T., Shibuta T., Inoue T., Tsubone M., Toyosawa Y., Satoh H., Akaishi R., Yoshii Y., Ohtsubo K.	Development and characterization of a new rice cultivar, 'Chikushi-kona 85', derived from a starch-branching enzyme IIb-deficient mutant line.	Breed. Sci.	68(2)	278-283	2018		
45609	29671148	Sun J., Yang L., Wang J., Liu H., Zheng H., Xie D., Zhang M., Feng M., Jia Y., Zhao H., Zou D.	Identification of a cold-tolerant locus in rice (Oryza sativa L.) using bulked segregant analysis with a next-generation sequencing strategy.	Rice (N Y)	11(1)	24	2018		
45610	29622876	Sreedhar R., Tiku P.K.	Cupincin: A Novel Cupin Domain Containing Protease from Rice (<i>Oryza sativa</i> L.) Bran Comprising of Procoagulant and Fibrinogenolytic Activity.	Indian J Hematol Blood Transfus	34(2)	314-321	2018		
45611	29700611	Tsunemitsu Y., Genga M., Okada T., Yamaji N., Ma J.F., Miyazaki A., Kato S.I., Iwasaki K., Ueno D.	A member of cation diffusion facilitator family, MTP11, is required for manganese tolerance and high fertility in rice.	Planta	248(1)	231-241	2018		
45612	29688851	Civ?? P., Brown T.A.	Role of genetic introgression during the evolution of cultivated rice (Oryza sativa L.).	BMC Evol. Biol.	18(1)	57	2018		
45613	29755498	Wang M., Zhang T., Peng H., Luo S., Tan J., Jiang K., Heng Y., Zhang X., Guo X., Zheng J., Cheng Z.	Rice <i>Premature leaf senescence 2</i>, Encoding a Glycosyltransferase (GT), Is Involved in leaf senescence.	Front Plant Sci	9	560	2018	SWEET4,XA13,SWEET15,SUT1,RSUS1,ICL,NYC3,RSUS2,EAS1 ,SGR,XA41,RSUS4,PLS2,SUT2	OsSWEET4,xa13, Xa13, Os8N3, Os-8N3, 8N3, OsSWEET11, SWEET11, OsSWEET11/Xa13, Xa13/Os8N3/SWEET11, Os8N3/Xa13, OsSWEET11/Os8N3, OsSWEET11a, SWEET11a,OsSWEET15,OsSUT1, OsSUT2,sus1, RSus1(t), SUS1, SS2, OsScS2, RSs2, RSus1, SuSy1, OsSUS1, RSS2, RSus2, OsRSUS1,OsEnS-107, EnS-107, OsI85, I85, OsICL, Osl85, l43, Osl43, OsL85,nyc3, OsNYC3, PPH,sus2, RSus2(t), SUS2, SS1, OsScS1, RSs1, RSus2, OsSUS2, RSS1, RSus1, OsSusy2, Susy2, OsRSUS1, RSUS1,OsPAO, PAO, OsACD1, ACD1, OsEAS1, RCD2, OsRCD2,sgr(t), sgr, OsSGR, OsSgr, SGR1, OsSGR1,OsSWEET14, SWEET14, Os11N3, Os-11N3, 11N3, Xa41(t), xa41, Os11N3/SWEET14, OsSWEET14/Os11N3,SUS4, SS4, OsScS4, RSs4, RSus4, OsSUS4,SQD2.3, OsSQD2.3,OsSUT2(t), SUT2M, OsSUT2, OsSUT2M, OsSUT5
45614	29778643	Shimatani Z., Fujikura U., Ishii H., Matsui Y., Suzuki M., Ueke Y., Taoka K.I., Terada R., Nishida K., Kondo A.	Inheritance of co-edited genes by CRISPR-based targeted nucleotide substitutions in rice.	Plant Physiol. Biochem.	131	78-83	2018		
45615	29725574	Wang H., Lee A.R., Park S.Y., Jin S.H., Lee J., Ham T.H., Park Y., Zhao W.G., Kwon S.W.	Genome-wide association study reveals candidate genes related to low temperature tolerance in rice (<i>Oryza sativa</i>) during germination.	3 Biotech	8(5)	235	2018		
45616	29656249	An S., Niu X., Chen W., Sheng H., Lai S., Yang Z., Gu X., Zhou S.	Mechanism of matrix-bound phosphine production in response to atmospheric elevated CO2 in paddy soils.	Environ. Pollut.	239	253-260	2018		
45617	29679934	Guha T., Ravikumar K.V.G., Mukherjee A., Mukherjee A., Kundu R.	Nanopriming with zero valent iron (nZVI) enhances germination and growth in aromatic rice cultivar (Oryza sativa cv. Gobindabhog L.).	Plant Physiol. Biochem.	127	403-413	2018		
45618	29637380	Nan J., Feng X., Wang C., Zhang X., Wang R., Liu J., Yuan Q., Jiang G., Lin S.	Improving rice grain length through updating the GS3 locus of an elite variety Kongyu 131.	Rice (N Y)	11(1)	21	2018		
45619	29577000	Sathish S., Venkatesh R., Safia N., Sathishkumar R.	Studies on growth dynamics of embryogenic cell suspension cultures of commercially important <i>Indica</i> rice cultivars ASD16 and Pusa basmati.	3 Biotech	8(4)	194	2018		
45620	29850513	Tomita M., Ishii K.	Genetic Performance of the Semidwarfing Allele <i>sd1</i> Derived from a Japonica Rice Cultivar and Minimum Requirements to Detect Its Single-Nucleotide Polymorphism by MiSeq Whole-Genome Sequencing.	Biomed Res Int	2018	4241725	2018		
45621	29706977	Zhang G.M., Zheng T.Q., Chen Z., Wang Y.L., Wang Y., Shi Y.M., Wang C.C., Zhang L.Y., Ma J.T., Deng L.W., Li W., Xu T.T., Liang C.Z., Xu J.L., Li Z.K.	Joint Exploration of Favorable Haplotypes for Mineral Concentrations in Milled Grains of Rice (<i>Oryza sativa</i> L.).	Front Plant Sci	9	447	2018		
45622	29636002	Hayashi M., Crofts N., Oitome N.F., Fujita N.	Analyses of starch biosynthetic protein complexes and starch properties from developing mutant rice seeds with minimal Starch synthase activities.	BMC Plant Biol.	18(1)	59	2018		
45623	29692791	Yang B., Xu S., Xu L., You H., Xiang X.	Effects of <i>Wx</i> and Its Interaction With <i>SSIII-2</i> on Rice Eating and Cooking Qualities.	Front Plant Sci	9	456	2018		
45624	29719548	Duan L., Han J., Guo Z., Tu H., Yang P., Zhang D., Fan Y., Chen G., Xiong L., Dai M., Williams K., Corke F., Doonan J.H., Yang W.	Novel Digital Features Discriminate Between Drought Resistant and Drought Sensitive Rice Under Controlled and Field Conditions.	Front Plant Sci	9	492	2018		
45625	29509070	Chaiyaso T., Srisuwan W., Techapun C., Watanabe M., Takenaka S.	Direct bioconversion of rice residue from canteen waste into lipids by new amylolytic oleaginous yeast Sporidiobolus pararoseus KX709872.	Prep. Biochem. Biotechnol.	48(4)	361-371	2018		
45626	29698758	Lee J.P., Lee H.W., Na H.B., Lee J.H., Hong Y.J., Jeon J.M., Kwon E.J., Kim S.K., Kim H.	Characterization of truncated endo-beta-1,4-glucanases from a compost metagenomic library and their saccharification potentials.	Int. J. Biol. Macromol.	115	554-562	2018		
45627	29632394	Wang Q.L., Sun A.Z., Chen S.T., Chen L.S., Guo F.Q.	SPL6 represses signalling outputs of ER stress in control of panicle cell death in rice.	Nat Plants	4(5)	280-288	2018		
45628	29983960	Graham-Acquaah S., Saito K., Traore K., Dieng I., Alognon A., Bah S., Sow A., Manful J.T.	Variations in agronomic and grain quality traits of rice grown under irrigated lowland conditions in West Africa.	Food Sci Nutr	6(4)	970-982	2018		
45629	29608565	Bouain N., Satbhai S.B., Korte A., Saenchai C., Desbrosses G., Berthomieu P., Busch W., Rouached H.	Natural allelic variation of the AZI1 gene controls root growth under zinc-limiting condition.	PLoS Genet.	14(4)	e1007304	2018		
45630	29595845	Du P., Wu Y., Yu J.S.	Real-time detection of the nanoparticle induced phytotoxicity in rice root tip through the visible red emissions of Eu3+ ions.	Photochem. Photobiol. Sci.	17(4)	499-504	2018		
45631	29658118	Li G.Z., Wang Z.Q., Yokosho K., Ding B., Fan W., Gong Q.Q., Li G.X., Wu Y.R., Yang J.L., Ma J.F., Zheng S.J.	Transcription factor WRKY22 promotes aluminum tolerance via activation of OsFRDL4 expression and enhancement of citrate secretion in rice (Oryza sativa).	New Phytol.	219(1)	149-162	2018		
45632	29709624	Taniguchi M., Ochiai A., Namae T., Saito K., Kato T., Saitoh E., Tanaka T.	The antimicrobial and anti-endotoxic peptide AmyI-1-18 from rice alpha-amylase and its [N3L] analog promote angiogenesis and cell migration.	Peptides	104	78-84	2018		
45633	29707435	Zhang G., Hua Z.	Genome comparison implies the role of Wsm2 in membrane trafficking and protein degradation.	PeerJ	6	e4678	2018		
45634	29641510	Sinha S.K., Sevanthi V AM., Chaudhary S., Tyagi P., Venkadesan S., Rani M., Mandal P.K.	Transcriptome Analysis of Two Rice Varieties Contrasting for Nitrogen Use Efficiency under Chronic N Starvation Reveals Differences in Chloroplast and Starch Metabolism-Related Genes.	Genes (Basel)	9(4)		2018		
45635	29655066	Rao Z.X., Huang D.Y., Wu J.S., Zhu Q.H., Zhu H.H., Xu C., Xiong J., Wang H., Duan M.M.	Distribution and availability of cadmium in profile and aggregates of a paddy soil with 30-year fertilization and its impact on Cd accumulation in rice plant.	Environ. Pollut.	239	198-204	2018		
45636	29577566	Cai Y., Li S., Jiao G., Sheng Z., Wu Y., Shao G., Xie L., Peng C., Xu J., Tang S., Wei X., Hu P.	OsPK2 encodes a plastidic pyruvate kinase involved in rice endosperm starch synthesis, compound granule formation and grain filling.	Plant Biotechnol. J.	16(11)	1878-1891	2018		
45637	29672536	Ohmido N., Iwata A., Kato S., Wako T., Fukui K.	Development of a quantitative pachytene chromosome map and its unification with somatic chromosome and linkage maps of rice (Oryza sativa L.).	PLoS ONE	13(4)	e0195710	2018		
45638	29685102	Mishima K., Hirao T., Tsubomura M., Tamura M., Kurita M., Nose M., Hanaoka S., Takahashi M., Watanabe A.	Identification of novel putative causative genes and genetic marker for male sterility in Japanese cedar (Cryptomeria japonica D.Don).	BMC Genomics	19(1)	277	2018		
45639	29676468	Ellsworth P.V., Ellsworth P.Z., Koteyeva N.K., Cousins A.B.	Cell wall properties in Oryza sativa influence mesophyll CO2 conductance.	New Phytol.	219(1)	66-76	2018		
45640	29687350	Moon S., Oo M.M., Kim B., Koh H.J., Oh S.A., Yi G., An G., Park S.K., Jung K.H.	Genome-wide analyses of late pollen-preferred genes conserved in various rice cultivars and functional identification of a gene involved in the key processes of late pollen development.	Rice (N Y)	11(1)	28	2018		
45641	29630984	Singh P.K., Ray S., Thakur S., Rathour R., Sharma V., Sharma T.R.	Co-evolutionary interactions between host resistance and pathogen avirulence genes in rice-Magnaporthe oryzae pathosystem.	Fungal Genet. Biol.	115	9-19	2018		
45642	29697740	Negri T.D.C., Alves W.A.L., Bugatti P.H., Saito P.T.M., Domingues D.S., Paschoal A.R.	Pattern recognition analysis on long noncoding RNAs: a tool for prediction in plants.	Brief. Bioinformatics			2018		
45643	29675645	Qi L., Ding Y., Zheng X., Xu R., Zhang L., Wang Y., Wang X., Zhang L., Cheng Y., Qiao W., Yang Q.	Fine mapping and identification of a novel locus qGL12.2 control grain length in wild rice (Oryza rufipogon Griff.).	Theor. Appl. Genet.	131(7)	1497-1508	2018		
45644	29630662	Zhu Y., Sun H., He S., Lou Q., Yu M., Tang M., Tu L.	Metabolism and prebiotics activity of anthocyanins from black rice (Oryza sativa L.) in vitro.	PLoS ONE	13(4)	e0195754	2018		
45645	29365172	Yao R., Wang L., Li Y., Chen L., Li S., Du X., Wang B., Yan J., Li J., Xie D.	Rice DWARF14 acts as an unconventional hormone receptor for strigolactone.	J. Exp. Bot.	69(9)	2355-2365	2018		
45646	29652796	Liu X., Li J., Xu L., Wang Q., Lou Y.	Expressing <i>OsMPK4</i> Impairs Plant Growth but Enhances the Resistance of Rice to the Striped Stem Borer <i>Chilo suppressalis</i>.	Int J Mol Sci	19(4)		2018		
45647	29633975	Guo L., Zhang Y., Ma M., Liu Q., Zhang Y., Peng Y., Liu J.	Crystallization of the rice immune receptor RGA5A_S with the rice blast fungus effector AVR1-CO39 prepared via mixture and tandem strategies.	Acta Crystallogr F Struct Biol Commun	74(Pt 4)	262-267	2018		
45648	29537667	Hu M., Lv S., Wu W., Fu Y., Liu F., Wang B., Li W., Gu P., Cai H., Sun C., Zhu Z.	The domestication of plant architecture in African rice.	Plant J.	94(4)	661-669	2018		
45649	29686690	Ndjiondjop M.N., Semagn K., Sow M., Manneh B., Gouda A.C., Kpeki S.B., Pegalepo E., Wambugu P., Si? M., Warburton M.L.	Assessment of Genetic Variation and Population Structure of Diverse Rice Genotypes Adapted to Lowland and Upland Ecologies in Africa Using SNPs.	Front Plant Sci	9	446	2018		
45650	29637263	Sowadan O., Li D., Zhang Y., Zhu S., Hu X., Bhanbhro L.B., Edzesi W.M., Dang X., Hong D.	Mining of favorable alleles for lodging resistance traits in rice (oryza sativa) through association mapping.	Planta	248(1)	155-169	2018		
45651	29706137	Wei G., Liu K., Shen T., Shi J., Liu B., Han M., Peng M., Fu H., Song Y., Zhu J., Dong A., Ni T.	Position-specific intron retention is mediated by the histone methyltransferase SDG725.	BMC Biol.	16(1)	44	2018		
45652	29570873	Itoh H., Wada K.C., Sakai H., Shibasaki K., Fukuoka S., Wu J., Yonemaru J.I., Yano M., Izawa T.	Genomic adaptation of flowering-time genes during the expansion of rice cultivation area.	Plant J.	94(5)	895-909	2018		
45653	29681763	Tan Y., Sun X., Fang B., Yu D., Sun Z., Wang W., Sheng X., Yin X., Liu L., Zhang Y., Duan M., Yuan D.	Conversion of a rice CMS maintainer into a photo- or thermo-sensitive genetic male sterile line.	Mol. Breed.	38(5)	56	2018		
45654	29604166	Zhu X.F., Yuan P., Zhang C., Li T.Y., Xuan Y.H.	RAVL1, an upstream component of brassinosteroid signalling and biosynthesis, regulates ethylene signalling via activation of EIL1 in rice.	Plant Biotechnol. J.	16(8)	1399-1401	2018	D2,RAVL1,D61,ERS1,EIN2,EIL1A	d2, dwf2, CYP90D2, D2/CYP90D2, OsD2, SMG11, OsSMG11, D2/SMG11, OsD2a, OsD2b,RAVL, OsRAVL1, OsNGA3, NGA3,d61*, dwf42, d61, OsBRI1, OSBRI1, BRI1, Os BRI1, Osbri1, OsBRKq1, BRKq1,OS-ERS1, OsERS1, OsERS1a, OsERS1b, OSERS,OsEIN2, MHZ7/OsEIN2, OsEIN2/MHZ7, MHZ7 ,EIL1, OsEIL1, EIL1a, OsEIL1a, MHZ6/OsEIL1, MHZ6, OsMHZ6
45655	29758379	Bertazzini M., Sacchi G.A., Forlani G.	A differential tolerance to mild salt stress conditions among six Italian rice genotypes does not rely on Na+ exclusion from shoots.	J. Plant Physiol.	226	145-153	2018		
45656	29538660	Haider I., Andreo-Jimenez B., Bruno M., Bimbo A., Flokov? K., Abuauf H., Ntui V.O., Guo X., Charnikhova T., Al-Babili S., Bouwmeester H.J., Ruyter-Spira C.	The interaction of strigolactones with abscisic acid during the drought response in rice.	J. Exp. Bot.	69(9)	2403-2414	2018		
45657	29740456	Prusty M.R., Kim S.R., Vinarao R., Entila F., Egdane J., Diaz M.G.Q., Jena K.K.	Newly Identified Wild Rice Accessions Conferring High salt tolerance Might Use a Tissue Tolerance Mechanism in Leaf.	Front Plant Sci	9	417	2018		
45658	29695083	Zhou P., Mo X., Wang W., Chen X., Lou Y.	The Commonly Used Bactericide Bismerthiazol Promotes Rice Defenses against Herbivores.	Int J Mol Sci	19(5)		2018		
45659	29671830	Gianinetti A., Finocchiaro F., Bagnaresi P., Zechini A., Faccioli P., Cattivelli L., Val? G., Biselli C.	seed dormancy Involves a Transcriptional Program That Supports Early Plastid Functionality during Imbibition.	Plants (Basel)	7(2)		2018		
45660	29520969	Dissanayaka DMSB., Plaxton W.C., Lambers H., Siebers M., Marambe B., Wasaki J.	Molecular mechanisms underpinning phosphorus-use efficiency in rice.	Plant Cell Environ.	41(7)	1483-1496	2018		
45661	29671092	Mulsanti I.W., Yamamoto T., Ueda T., Samadi A.F., Kamahora E., Rumanti I.A., Thanh V.C., Adachi S., Suzuki S., Kanekatsu M., Hirasawa T., Ookawa T.	Finding the superior allele of japonica-type for increasing stem lodging resistance in indica rice varieties using chromosome segment substitution lines.	Rice (N Y)	11(1)	25	2018		
45662	29965018	Gu J.F., Zhou H., Jia R.Y., Wang Q.Q., Li H.C., Zhang P., Peng P.Q., Liao B.H.	[Effects of a Tribasic Amendment on Cadmium and Arsenic Accumulation and Translocation in Rice in a Field Experiment].	Huan Jing Ke Xue	39(4)	1910-1917	2018		
45663	29161206	Phan N.T., De Waele D., Lorieux M., Xiong L., Bellafiore S.	A Hypersensitivity-Like Response to Meloidogyne graminicola in Rice (Oryza sativa).	Phytopathology	108(4)	521-528	2018		
45664	29725341	Mager S., Ludewig U.	Massive Loss of DNA Methylation in Nitrogen-, but Not in Phosphorus-Deficient <i>Zea mays</i> Roots Is Poorly Correlated With Gene Expression Differences.	Front Plant Sci	9	497	2018		
45665	29692789	Husaini A.M., Sohail M.	Time to Redefine Organic Agriculture: Can't GM Crops Be Certified as Organics?	Front Plant Sci	9	423	2018		
45666	29629486	Kobayashi A., Hori K., Yamamoto T., Yano M.	Koshihikari: a premium short-grain rice cultivar - its expansion and breeding in Japan.	Rice (N Y)	11(1)	15	2018		
45667	29655154	Anupama A., Bhugra S., Lall B., Chaudhury S., Chugh A.	Assessing the correlation of genotypic and phenotypic responses of indica rice varieties under drought stress.	Plant Physiol. Biochem.	127	343-354	2018		
45668	29642546	Akhter D., Qin R., Nath U.K., Alamin M., Jin X., Shi C.	The Brown Midrib Leaf (bml) Mutation in Rice (Oryza sativa L.) Causes Premature leaf senescence and the Induction of Defense Responses.	Genes (Basel)	9(4)		2018		
45669	29875608	Zhang Y., Zhou J., Li J., Yang Y., Xu P., Tao D.	Mapping of <i>S56</i>(t) responsible for interspecific hybrid sterility between <i>Oryza sativa</i> and <i>Oryza glumaepatula</i>.	Breed. Sci.	68(2)	242-247	2018	S56	S56(t) 
45670	29330900	Pan J., Huang D., Guo Z., Kuang Z., Zhang H., Xie X., Ma Z., Gao S., Lerdau M.T., Chu C., Li L.	Overexpression of microRNA408 enhances photosynthesis, growth, and seed yield in diverse plants.	J Integr Plant Biol	60(4)	323-340	2018		
45671	30065932	Nevame A.Y.M., Emon R.M., Malek M.A., Hasan M.M., Alam M.A., Muharam F.M., Aslani F., Rafii M.Y., Ismail M.R.	Relationship between High Temperature and Formation of Chalkiness and Their Effects on Quality of Rice.	Biomed Res Int	2018	1653721	2018		
45672	29761327	Wada S., Suzuki Y., Takagi D., Miyake C., Makino A.	Effects of genetic manipulation of the activity of photorespiration on the redox state of photosystem I and its robustness against excess light stress under CO2-limited conditions in rice.	Photosyn. Res.			2018		
45673	29704881	Wakasa Y., Kawakatsu T., Harada T., Takaiwa F.	Transgene-independent heredity of RdDM-mediated transcriptional gene silencing of endogenous genes in rice.	Plant Biotechnol. J.	16(12)	2007-2015	2018		
45674	29604140	Hong Y., Yuan S., Sun L., Wang X., Hong Y.	Cytidinediphosphate-diacylglycerol synthase 5 is required for phospholipid homeostasis and is negatively involved in hyperosmotic stress tolerance.	Plant J.	94(6)	1038-1050	2018	CDS5,CDS3,CDS2,CDS1,BZIP23,CML31,PP2C6,CDS4,RAB16C	OsCDS5, OsVTE5, VTE5,OsCDS3,OsCDS2,OsCDS1,OsbZIP23, OsAREB1, OsABF2, Osbzip23, OsAREB2, OsZIP23, ZIP23,OsCML31, OsMSR2, MSR2,OsPP2C06/OsABI2, OsPP2C06, OsPP2C6, OsABI2, OsPP10, ABI2, OsABIL1, ABIL1,OsCDS4,rab21, OsLEA27, rab16C, OsRAB16C, DHD
45675	29855556	Boddupally D., Tamirisa S., Gundra S.R., Vudem D.R., Khareedu V.R.	Expression of hybrid fusion protein (Cry1Ac::ASAL) in transgenic rice plants imparts resistance against multiple insect pests.	Sci Rep	8(1)	8458	2018		
45676	29855701	Liu H., Ren X., Zhu J., Wu X., Liang C.	Effect of exogenous abscisic acid on morphology, growth and nutrient uptake of rice (Oryza sativa) roots under simulated acid rain stress.	Planta	248(3)	647-659	2018		
45677	29875779	Sun H., Feng F., Liu J., Zhao Q.	Nitric Oxide Affects Rice Root Growth by Regulating Auxin Transport Under Nitrate Supply.	Front Plant Sci	9	659	2018		
45678	29792165	Taneja M., Upadhyay S.K.	Molecular characterization and differential expression suggested diverse functions of P-type II Ca2+ATPases in Triticum aestivum L.	BMC Genomics	19(1)	389	2018		
45679	30150871	Panda D., Mahakhud A., Mohanty B., Mishra S.S., Barik J.	Genotypic variation of photosynthetic gas exchange and stomatal traits in some traditional rice (<i>Oryza sativa</i> L.) landraces from Koraput, India for crop improvement.	Physiol Mol Biol Plants	24(5)	973-983	2018		
45680	29740721	Singh V., Singh A.P., Bhadoria J., Giri J., Singh J., T V V., Sharma P.C.	Differential expression of salt-responsive genes to salinity stress in salt-tolerant and salt-sensitive rice (Oryza sativa L.) at seedling stage.	Protoplasma			2018		
45681	29846871	Fukayama H., Mizumoto A., Ueguchi C., Katsunuma J., Morita R., Sasayama D., Hatanaka T., Azuma T.	Expression level of Rubisco activase negatively correlates with Rubisco content in transgenic rice.	Photosyn. Res.	137(3)	465-474	2018		
45682	29844229	Johnson C., Conrad L.J., Patel R., Anderson S., Li C., Pereira A., Sundaresan V.	Reproductive Long Intergenic Noncoding RNAs Exhibit Male Gamete Specificity and Polycomb Repressive Complex 2-Mediated Repression.	Plant Physiol.	177(3)	1198-1217	2018		
45683	29718936	Islam M.Z., Khalequzzaman M., Prince MFRK., Siddique M.A., Rashid ESMH., Ahmed M.S.U., Pittendrigh B.R., Ali M.P.	Diversity and population structure of red rice germplasm in Bangladesh.	PLoS ONE	13(5)	e0196096	2018		
45684	29660196	Dong Q., Li N., Li X., Yuan Z., Xie D., Wang X., Li J., Yu Y., Wang J., Ding B., Zhang Z., Li C., Bian Y., Zhang A., Wu Y., Liu B., Gong L.	Genome-wide Hi-C analysis reveals extensive hierarchical chromatin interactions in rice.	Plant J.	94(6)	1141-1156	2018		
45685	29717019	Long W., Wang Y., Zhu S., Jing W., Wang Y., Ren Y., Tian Y., Liu S., Liu X., Chen L., Wang D., Zhong M., Zhang Y., Hu T., Zhu J., Hao Y., Zhu X., Zhang W., Wang C., Zhang W., Wan J.	FLOURY shrunken endosperm1 Connects Phospholipid Metabolism and Amyloplast Development in Rice.	Plant Physiol.	177(2)	698-712	2018	SBE1,SSIVB,FLO5,SSI,PHS8,PUL,WX1,AGPL3,ISA2,SBE3,AGPS2,FSE1,AGPS1,ALK,AGPL2	sbe1, Rbe1. Sbe1, sbe1*(QEI), RBE1, BEI, SBE I, QEI, OsBEI, BE1, OsSBE1, OsSBEI, SBEI,OsSSIVb, SSIV-2, OsSSIV-2, SSIVb, SSIV-2, SSIV2, OsSSIV2,OsSSIIIa, SSIII-2, OsSSIII-2, OsSS3A, SS3A, SS3a, OsSSSIIIa, SSIIIa, Flo5,OsSSI, SSS 1, SSS1, SS1, OsSS1, SSSI, OsSSSI,ISA1, OsISA1, ISA, OsISA, PHS8/ISA1, OsPHS8, ISA I, OsISA I, ISAI, OsISAI,OsPUL, SDBE, OsPUL3, RE,wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx,OsAGPL3, APL3, OsAPL3, AGPlar, OsAGPL1, AGPL1,OsISA2, ISA II, OsISA II,SBEIII*, SBEIII, Sbe3, RBE3, QEIIa, QEIIA, BEIIb, BEIIB, SBEIIb, OsBEIIb, sbe3, SBE III, OsSBEIIb, SBEIIb,OsAGPS2a, AGPS2A, AGPS2B, OsAGPS2, osagps2, APS2, APS2a, APS2b, AGPS2a, APGS2b, OsAGPS2b, AGPP, GAS8, OsAPS2, OsAPS2a, OsAPS2b,,OsAGPS1, APS1, OsAPS1, AGPsma,alk, SSII-3, OsSSIIa, OsSSII-3, SSIIa, SSS2A, OsSSIIaChr6, SS2a,OsAGPL2, osagpl2, APL2, OsAPL2, AGPiso, sh2, Sh2, GIF2, GAS1 
45686	29868069	Chen P., Shen Z., Ming L., Li Y., Dan W., Lou G., Peng B., Wu B., Li Y., Zhao D., Gao G., Zhang Q., Xiao J., Li X., Wang G., He Y.	Genetic Basis of Variation in Rice Seed Storage Protein (Albumin, Globulin, Prolamin, and Glutelin) Content Revealed by Genome-Wide Association Analysis.	Front Plant Sci	9	612	2018		
45687	29603552	Lincoln J.E., Sanchez J.P., Zumstein K., Gilchrist D.G.	Plant and animal PR1 family members inhibit programmed cell death and suppress bacterial pathogens in plant tissues.	Mol. Plant Pathol.	19(9)	2111-2123	2018		
45688	29774046	Byun M.Y., Cui L.H., Lee J., Park H., Lee A., Kim W.T., Lee H.	Identification of Rice Genes Associated With Enhanced cold tolerance by Comparative Transcriptome Analysis With Two Transgenic Rice Plants Overexpressing <i>DaCBF4</i> or <i>DaCBF7</i>, Isolated From Antarctic Flowering Plant <i>Deschampsia antarctica</i>.	Front Plant Sci	9	601	2018		
45689	29965549	Li Y.Q., Sun T., Deng H., Zhang C., Wang Y.M., Wang D.Y.	[Characteristics of Mercury Transformation in Soil and Accumulation in Rice Plants in an Acidic Purple Paddy Soil Area].	Huan Jing Ke Xue	39(5)	2472-2479	2018		
45690	29800928	Hou D., Wang R., Gao X., Wang K., Lin Z., Ge J., Liu T., Wei S., Chen W., Xie R., Yang X., Lu L., Tian S.	Cultivar-specific response of bacterial community to cadmium contamination in the rhizosphere of rice (Oryza sativa L.).	Environ. Pollut.	241	63-73	2018		
45691	29744607	Chang K., Wang Q., Shi X., Wang S., Wu H., Nie L., Li H.	Stepwise partially overlapping primer-based PCR for genome walking.	AMB Express	8(1)	77	2018		
45692	29575650	Li J., Zhang X., Sun Y., Zhang J., Du W., Guo X., Li S., Zhao Y., Xia L.	Efficient allelic replacement in rice by gene editing: A case study of the NRT1.1B gene.	J Integr Plant Biol	60(7)	536-540	2018		
45693	29989091	Jiang J., Xing F., Zeng X., Zou Q.	RicyerDB: A Database For Collecting Rice Yield-related Genes with Biological Analysis.	Int. J. Biol. Sci.	14(8)	965-970	2018		
45694	29757987	Anis G.B., Zhang Y., Wang H., Li Z., Wu W., Sun L., Riaz A., Cao L., Cheng S.	Genomic Regions Analysis of Seedling Root Traits and Their Regulation in Responses to Phosphorus Deficiency Tolerance in CSSL Population of Elite Super Hybrid Rice.	Int J Mol Sci	19(5)		2018		
45695	29562362	Kishi-Kaboshi M., Seo S., Takahashi A., Hirochika H.	The MAMP-Responsive MYB Transcription Factors MYB30, MYB55 and MYB110 Activate the HCAA Synthesis Pathway and Enhance Immunity in Rice.	Plant Cell Physiol.	59(5)	903-915	2018	_,MYB30,_,4CL3,EPSPS,CM,SK2,_,MYB9,SMG1,PAL1,CS,_,ROMT9,_,CCR20,C4H1,C3H1,DNRL1,HCT2,PPAAT	OsADT, ADT,OsMYB30, OsMYB5P, MYB5P, OsMYB13a, MYB13a, Os2R_MYB26, 2R_MYB26, OsMYB30C, MYB30C,ROMT-16, ROMT16, COA1, CCoAOMT-1, OsROMT-16, OsROMT16, OsCOA1, OsCCoAOMT-1,Os4CL3, Os4CL2, Os4CL, 4CL2, 4CL,EPSPs, OsEPSPS,OsCM,OsSK2,DHQDT/SDH, OsDHQDT/SDH, OsDHQDT, OsSDH, DHQDT, SDH, DHQ/SDH-1,OsMyb9, OsMyb8, OsMYB110, Myb9, Myb8, MYB110, Os2R_MYB87, 2R_MYB87,OsMKK4, MKK4, OsMKK4/SMG1, OsMAPKK4, MAPKK4, OsMEK4, MEK4, OsSMG1, SMG1/OsMEK6, OsMEK6, MEK6, OsSTS, STS,OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6,OsCS,DHQS, OsDHQS,COMT, OsCOMT, ROMT-9, OsCOMT1, OsCAldOMT1, CAldOMT1, OsOMT, OsCOMT15, COMT15,OsMYB4, Osmyb4, OsMyb4, MYB4, OsMYB55, MYB55, OsMyb8, MYB8, OsMYB13b, MYB13b, OsMYB15, MYB15, Os2R_MYB46, 2R_MYB46,OS-CCR, OsCCR, CCR, OsCCR20, OsCCR14, CCR14 ,OsC4H1, OsC4H, C4H,OsC3H1, OsC3'H, C3'H, OsCYP71P5, CYP71P5,OsDAHP1, DAHP1, DAHPS, OsDAHPS2, DAHPS2, OsDNRL1,OsHCT2, HCT,OsPPA-AT, PPA-AT
45696	29633905	Gupta M.K., Vadde R., Donde R., Gouda G., Kumar J., Nayak S., Jena M., Behera L.	Insights into the structure-function relationship of brown plant hopper resistance protein, Bph14 of rice plant: a computational structural biology approach.	J. Biomol. Struct. Dyn.		1-17	2018		
45697	29855560	Hu J., Zeng T., Xia Q., Qian Q., Yang C., Ding Y., Chen L., Wang W.	Unravelling miRNA regulation in yield of rice (Oryza sativa) based on differential network model.	Sci Rep	8(1)	8498	2018		
45698	29744589	Wang H., Mo Y.J., Im D.E., Jang S.G., Ham T.H., Lee J., Jeung J.U., Kwon S.W.	A new SNP in cyOsPPDK gene is associated with floury endosperm in Suweon 542.	Mol. Genet. Genomics			2018	FLO4	FLO4-4, flo4, flo4-2, flo4-3, ppdk, OsPPDK, PPDK1, CPDK1, PPDKB, OsPPDKB, cyOsPPDKB, OsPBDK, PBDK, osppdkb, PPD, cyPPDK, chPPDKB, chOsPPDKB
45699	29746484	Yang X., Xia X., Zeng Y., Nong B., Zhang Z., Wu Y., Xiong F., Zhang Y., Liang H., Deng G., Li D.	Identification of candidate genes for gelatinization temperature, gel consistency and pericarp color by GWAS in rice based on SLAF-sequencing.	PLoS ONE	13(5)	e0196690	2018		
45700	29795191	Zhao H., Wang X., Jia Y., Minkenberg B., Wheatley M., Fan J., Jia M.H., Famoso A., Edwards J.D., Wamishe Y., Valent B., Wang G.L., Yang Y.	The rice blast resistance gene Ptr encodes an atypical protein required for broad-spectrum disease resistance.	Nat Commun	9(1)	2039	2018	PTR,PITA	Ptr, OsPtr, Ptr(t),Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30, Trx30
45701	29566164	Qin P., Fan S., Deng L., Zhong G., Zhang S., Li M., Chen W., Wang G., Tu B., Wang Y., Chen X., Ma B., Li S.	lml1, Encoding a Conserved eukaryotic release factor 1 Protein, Regulates Cell Death and Pathogen Resistance by Forming a Conserved Complex with SPL33 in Rice.	Plant Cell Physiol.	59(5)	887-902	2018	PR1B,NAC4,SPLHM47,PAL1,PR10A,RSOSPR10,SPL33	OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1, OsPR1a, PR1a,OsNAC4, NAC68, ONAC068, OnNAC4*, OnNAC4, OsNAC4/ONAC068,splHM47, HM47, OsPelo, OsPELO, PELO, LML1, OsLML1,OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,RSOsPR10, RsOsPR10a, OsPR10a, OsPR10alpha, OsPR10, PR10, OsBETV1, BETV1,LMM5.1, SPL33/LMM5.1, OsSPL33, OsLMM5.1
45702	29760197	Ishikawa T., Fang L., Rennie E.A., Sechet J., Yan J., Jing B., Moore W., Cahoon E.B., Scheller H.V., Kawai-Yamada M., Mortimer J.C.	GLUCOSAMINE INOSITOLPHOSPHORYLCERAMIDE TRANSFERASE1 (GINT1) Is a GlcNAc-Containing Glycosylinositol Phosphorylceramide Glycosyltransferase.	Plant Physiol.	177(3)	938-952	2018	GINT2,GMT1,FSE6	OsGINT2,OsGMT1,OsGINT1, GINT1, OsFSE6
45703	29725160	Radanielson A.M., Angeles O., Li T., Ismail A.M., Gaydon D.S.	Describing the physiological responses of different rice genotypes to salt stress using sigmoid and piecewise linear functions.	Field Crops Res.	220	46-56	2018		
45704	29723918	Liang Z., Chen K., Yan Y., Zhang Y., Gao C.	Genotyping genome-edited mutations in plants using CRISPR ribonucleoprotein complexes.	Plant Biotechnol. J.	16(12)	2053-2062	2018		
45705	29734523	Wu T.Y., Gruissem W., Bhullar N.K.	Targeting intracellular transport combined with efficient uptake and storage significantly increases grain iron and zinc levels in rice.	Plant Biotechnol. J.			2018		
45706	29730773	Zhang J., Zhao W., Fu R., Fu C., Wang L., Liu H., Li S., Deng Q., Wang S., Zhu J., Liang Y., Li P., Zheng A.	Comparison of gene co-networks reveals the molecular mechanisms of the rice (Oryza sativa L.) response to Rhizoctonia solani AG1 IA infection.	Funct. Integr. Genomics	18(5)	545-557	2018		
45707	30135718	Kumar A., Pandeya A., Malik G., Sharma M., P HK., S AK., Gahlaut V., Gajula MNVP., Singh K.P., Suravajhala P., Balyan H.S., Gupta P.K.	<b>---</b>A web resource for nutrient use efficiency-related genes, quantitative trait loci and microRNAs in important cereals and model plants.	F1000Res	7		2018		
45708	30119729	Xiao H.M., Cai W.J., Ye T.T., Ding J., Feng Y.Q.	Spatio-temporal profiling of abscisic acid, indoleacetic acid and jasmonic acid in single rice seed during seed germination.	Anal. Chim. Acta	1031	119-127	2018		
45709	29933987	Yu L., Wang W., Zeng S., Chen Z., Yang A., Shi J., Zhao X., Song B.	Label-free quantitative proteomics analysis of Cytosinpeptidemycin responses in southern rice black-streaked dwarf virus-infected rice.	Pestic Biochem Physiol	147	20-26	2018		
45710	29766507	Rezaul I.M., Baohua F., Tingting C., Weimeng F., Caixia Z., Longxing T., Guanfu F.	Abscisic acid prevents pollen abortion under high-temperature stress by mediating sugar metabolism in rice spikelets.	Physiol Plant			2018		
45711	29728590	Bajgain P., Russell B., Mohammadi M.	Phylogenetic analyses and in-seedling expression of ammonium and nitrate transporters in wheat.	Sci Rep	8(1)	7082	2018		
45712	29725159	Torres R.O., Henry A.	Yield stability of selected rice breeding lines and donors across conditions of mild to moderately severe drought stress.	Field Crops Res.	220	37-45	2018		
45713	29549093	Zhang X., Bao Y., Shan D., Wang Z., Song X., Wang Z., Wang J., He L., Wu L., Zhang Z., Niu D., Jin H., Zhao H.	<i>Magnaporthe oryzae</i> Induces the Expression of a MicroRNA to Suppress the Immune Response in Rice.	Plant Physiol.	177(1)	352-368	2018		
45714	29799607	Saddique M.A.B., Ali Z., Khan A.S., Rana I.A., Shamsi I.H.	Inoculation with the endophyte Piriformospora indica significantly affects mechanisms involved in osmotic stress in rice.	Rice (N Y)	11(1)	34	2018		
45715	29432551	Huang L., Zhang M., Jia J., Zhao X., Huang X., Ji E., Ni L., Jiang M.	An Atypical Late Embryogenesis Abundant Protein OsLEA5 Plays a Positive Role in ABA-Induced Antioxidant Defense in Oryza sativa L.	Plant Cell Physiol.	59(5)	916-929	2018	_,RAB16B,CATB,BSRD1,LEA8,ABA8OX2,LEA3-1,NCED1,RBOHB,_,APX2,SODCC1,RAB16A,RBOHE	5C700,rab21, OsLEA28, OsRAB16D, OsRab16d, Rab16d, OsRAB16b, XERO1, OsXERO1, OsRD22, RD22,CatB, CAT-B, OsCatB, OsCATB, OsCAT1B, CAT1B, CAT2, OsCAT2,ZFP36, OsZFP36, OsBSRD1, Bsr-d1, BSR-D1, DLN91, OsDLN91,OsLEA8, OsLEA8a, OsLEA8b, OsLEA5, LEA5,OsABA8OX2, OsABA8ox2, CYP707A6, OsCYP707A6, OsAba-ox2, OsABA8ox2, OsABA8OH2, ABA8OH2, ABA8'-OH2, OsABA8'ox2, ABA8'ox2, OsABAX2, ABAX2, OsABA8'OH2, ABA8'OH2,OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3, OsLEA3A, LEA3A,OSNCED1, OsNCED-1, OsNCED3, OsNced3, NCED3, OsNCED9, NCED9,rbohB, OsrbohB, Os rbohB, OsRbohB, OsNox1, Nox1, Os-RbohB, RbohB, OsRboh1, Rboh1,5C300,OsAPX2, OsAPx02, APXb, OsAPx2, OSAPX2, APx2, cAPX, OsAPX1, APX1,sodCc1, SODCC.1, sodA, RSODA, OsSOD1, OsCSD2, OsSodA, SodCc2, OsSODA1, SODCc1-Cu/Zn, OsCu/Zn-SOD2, Cu/Zn-SOD2, OsCSD1.2, CSD1.2, OsSODCc1-Cu/Zn, SODCc1-Cu/Zn, CuZnSOD1, Cu/ZnSOD1, OsCu/ZnSOD1, OsCSD4, CDS4, CuZnSOD4, OsCuZnSOD1, OsCSD1, CSD1, OsSOD2,Rab16A, rab21, RAB21, OsRab21, OsRAB21, OsRAB-21, OsRab16A, OsLEA29, rab16A, OsRAB16A,rbohE, OsrbohE, Os rbohE, OsRbohE, OsNox3, Nox3, OsRboh3, Rboh3
45716	29725869	Murakami T., Kazama T., Toriyama K.	Genetic analysis of male sterility obtained from a rice cultivar Lebed backcrossed with Taichung 65.	Rice (N Y)	11(1)	30	2018		
45717	29813124	Yugander A., Sundaram R.M., Singh K., Ladhalakshmi D., Subba Rao LV., Madhav M.S., Badri J., Prasad M.S., Laha G.S.	Incorporation of the novel bacterial blight resistance gene Xa38 into the genetic background of elite rice variety Improved Samba Mahsuri.	PLoS ONE	13(5)	e0198260	2018		
45718	29775612	Wang X., Guan Z., Gong Z., Yan J., Yang G., Liu Y.G., Yin P.	Crystal structure of WA352 provides insight into cytoplasmic male sterility in rice.	Biochem. Biophys. Res. Commun.	501(4)	898-904	2018		
45719	29868097	Miura S., Crofts N., Saito Y., Hosaka Y., Oitome N.F., Watanabe T., Kumamaru T., Fujita N.	Starch synthase IIa-Deficient Mutant Rice Line Produces Endosperm Starch With Lower gelatinization temperature Than Japonica Rice Cultivars.	Front Plant Sci	9	645	2018		
45720	29797870	Ren Y.W., Xiao M.L., Yuan H.C., Zhu Z.K., Li Q.Y., Ge T.D., Su Y.R., Wu J.S.	[Allocation of rice photosynthates in plant-soil system in response to elevated CO2 and nitrogen fertilization.]	Ying Yong Sheng Tai Xue Bao	29(5)	1397-1404	2018		
45721	29796899	Haeck A., Van Langenhove H., Harinck L., Kyndt T., Gheysen G., H?fte M., Demeestere K.	Trace analysis of multi-class phytohormones in Oryza sativa using different scan modes in high-resolution Orbitrap mass spectrometry: method validation, concentration levels, and screening in multiple accessions.	Anal Bioanal Chem	410(18)	4527-4539	2018		
45722	29766351	Yamamoto N., Garcia R., Suzuki T., Solis C.A., Tada Y., Venuprasad R., Kohli A.	Comparative whole genome re-sequencing analysis in upland New Rice for Africa: insights into the breeding history and respective genome compositions.	Rice (N Y)	11(1)	33	2018		
45723	29783097	Kumar M.S.S., Mawlong I., Ali K., Tyagi A.	Regulation of phytosterol biosynthetic pathway during drought stress in rice.	Plant Physiol. Biochem.	129	11-20	2018		
45724	30080596	Liang Y., Zhao X., Jones A.M., Gao Y.	G proteins sculp root architecture in response to nitrogen in rice and Arabidopsis.	Plant Sci.	274	129-136	2018		
45725	29744285	Grechkin A.N., Ogorodnikova A.V., Egorova A.M., Mukhitova F.K., Ilyina T.M., Khairutdinov B.I.	allene oxide synthase Pathway in Cereal Roots: Detection of Novel Oxylipin Graminoxins.	ChemistryOpen	7(5)	336-343	2018		
45726	29845495	Kumar A., Sandhu N., Dixit S., Yadav S., Swamy B.P.M., Shamsudin N.A.A.	Marker-assisted selection strategy to pyramid two or more QTLs for quantitative trait-grain yield under drought.	Rice (N Y)	11(1)	35	2018		
45727	29965548	Wang B.X., Wang X.D., Duan G.L.	[Screening and Identification of Arsenic-resistant Endophytic Bacteria from Different Rice Tissues (<i>Oryza sativa</i> L.) in Different Growth Stages].	Huan Jing Ke Xue	39(5)	2464-2471	2018		
45728	29857174	He Y., Zhu M., Wang L., Wu J., Wang Q., Wang R., Zhao Y.	Programmed Self-Elimination of the CRISPR/Cas9 Construct Greatly Accelerates the Isolation of Edited and Transgene-Free Rice Plants.	Mol Plant	11(9)	1210-1213	2018		
45729	29567450	Ying J.Z., Ma M., Bai C., Huang X.H., Liu J.L., Fan Y.Y., Song X.J.	TGW3, a Major QTL that Negatively Modulates Grain Length and Weight in Rice.	Mol Plant	11(5)	750-753	2018	TGW3	GL3.3, OsSK41, SK41, OsGSK5, GSK5, qTGW3, OsTGW3, OsGSK5/OsSK41, OsSK41/OsGSK5, GL3.3/TGW3
45730	29868071	Zhou B., Zeng L.	The Tomato U-Box Type E3 Ligase PUB13 Acts With Group III Ubiquitin E2 Enzymes to Modulate FLS2-Mediated Immune Signaling.	Front Plant Sci	9	615	2018		
45731	29761034	Thomas N.C., Oksenberg N., Liu F., Caddell D., Nalyvayko A., Nguyen Y., Schwessinger B., Ronald P.C.	The rice XA21 ectodomain fused to the Arabidopsis EFR cytoplasmic domain confers resistance to <i>Xanthomonas oryzae</i> pv. <i>oryzae</i>.	PeerJ	6	e4456	2018		
45732	29581178	Li G., Yang X., Zhang X., Song Y., Liang W., Zhang D.	Rice Morphology Determinant-Mediated actin filament Organization Contributes to pollen Tube Growth.	Plant Physiol.	177(1)	255-270	2018		
45733	29753827	Huang Q., Liu Q., Lin L., Li F.J., Han Y., Song Z.G.	Reduction of arsenic toxicity in two rice cultivar seedlings by different nanoparticles.	Ecotoxicol. Environ. Saf.	159	261-271	2018		
45734	29872748	Manu M.S., Ghosh D., Chaudhari B.P., Ramasamy S.	Analysis of Tail-anchored protein translocation pathway in plants.	Biochem Biophys Rep	14	161-167	2018	_,_,_,_,_	Get3,Get3,Get4,Get3,Get1
45735	29783938	Panda B.B., Sekhar S., Dash S.K., Behera L., Shaw B.P.	Biochemical and molecular characterisation of exogenous cytokinin application on grain filling in rice.	BMC Plant Biol.	18(1)	89	2018		
45736	29735983	Lu H.P., Luo T., Fu H.W., Wang L., Tan Y.Y., Huang J.Z., Wang Q., Ye G.Y., Gatehouse A.M.R., Lou Y.G., Shu Q.Y.	Resistance of rice to insect pests mediated by suppression of serotonin biosynthesis.	Nat Plants	4(6)	338-344	2018	PAL1,ICS1,TDD1,PAD4,ASA2,SL	OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6,OsICS1, OsICS, ICS,OsTDD1, ASB1, OASB1, OsASbeta1, ASbeta1, TDD1/OASB1,OsPAD4,OASA2 (=ASA2), OsASA2, OASA2, ASalpha2, OsASalpha2, OASA2,OsSL, sl (spl1), sl*, sl, spl1, CYP71P1, Os CYP71P1, T5H, OsT5H, CYP71A1, OsCYP71A1, OsLLM1, LLM1, LLM1/OsSL, ELL1, OsELL1, ELL1/SL, OsT5H1
45737	29807545	Li C., Zong Y., Wang Y., Jin S., Zhang D., Song Q., Zhang R., Gao C.	Expanded base editing in rice and wheat using a Cas9-adenosine deaminase fusion.	Genome Biol.	19(1)	59	2018		
45738	29757203	Muhammad I., Jing X.Q., Shalmani A., Ali M., Yi S., Gan P.F., Li W.Q., Liu W.T., Chen K.M.	Comparative in Silico Analysis of Ferric Reduction Oxidase (FRO) Genes Expression Patterns in Response to Abiotic Stresses, Metal and Hormone Applications.	Molecules	23(5)		2018		
45739	29789516	Ravichanthiran K., Ma Z.F., Zhang H., Cao Y., Wang C.W., Muhammad S., Aglago E.K., Zhang Y., Jin Y., Pan B.	Phytochemical Profile of Brown Rice and Its Nutrigenomic Implications.	Antioxidants (Basel)	7(6)		2018		
45740	29846801	Abreu F.R.M., Dedicova B., Vianello R.P., Lanna A.C., de Oliveira JAV., Vieira A.F., Morais O.P., Mendon?a JA., Brondani C.	Overexpression of a phospholipase (OsPLDalpha1) for drought tolerance in upland rice (Oryza sativa L.).	Protoplasma	255(6)	1751-1761	2018		
45741	29764927	Xiao N., Gao Y., Qian H., Gao Q., Wu Y., Zhang D., Zhang X., Yu L., Li Y., Pan C., Liu G., Zhou C., Jiang M., Huang N., Dai Z., Liang C., Chen Z., Chen J., Li A.	Identification of Genes Related to cold tolerance and a Functional Allele That Confers cold tolerance.	Plant Physiol.	177(3)	1108-1123	2018	SAPK10,CTB4A,EBL1,_,EBL2,SKIN1,_	OsSAPK10, OsSnRK2.10, SnRK2.10,OsRLCK127, RLCK127, OsCTB4a, qCTB4-1,qSSR8, OsEBL1, ES43, OsPHD37, PHD37,qSSR9-1,  OsRING215, RING215,OsEBL2, OsPHD38, PHD38,OsSKIN1, OsO3L8, O3L8,qPSR10
45742	29567448	Xia D., Zhou H., Liu R., Dan W., Li P., Wu B., Chen J., Wang L., Gao G., Zhang Q., He Y.	GL3.3, a Novel QTL Encoding a GSK3/SHAGGY-like Kinase, Epistatically Interacts with GS3 to Produce Extra-long Grains in Rice.	Mol Plant	11(5)	754-756	2018	TGW3	GL3.3, OsSK41, SK41, OsGSK5, GSK5, qTGW3, OsTGW3, OsGSK5/OsSK41, OsSK41/OsGSK5, GL3.3/TGW3
45743	29555785	Hang R., Wang Z., Deng X., Liu C., Yan B., Yang C., Song X., Mo B., Cao X.	Ribosomal RNA Biogenesis and Its Response to Chilling Stress in <i>Oryza sativa</i>.	Plant Physiol.	177(1)	381-397	2018		
45744	29896209	Hao P.Y., Feng Y.L., Zhou Y.S., Song X.M., Li H.L., Ma Y., Ye C.L., Yu X.P.	Schaftoside Interacts With NlCDK1 Protein: A Mechanism of Rice Resistance to Brown Planthopper, <i>Nilaparvata lugens</i>.	Front Plant Sci	9	710	2018		
45745	29780402	Vergara C., Araujo K.E.C., Urquiaga S., Santa-Catarina C., Schultz N., da Silva Ara?jo E., de Carvalho Balieiro F., Xavier G.R., Zilli J?.	Dark Septate Endophytic Fungi Increase Green Manure-15N Recovery Efficiency, N Contents, and Micronutrients in Rice Grains.	Front Plant Sci	9	613	2018		
45746	29625654	Mitra S., Pramanik K., Ghosh P.K., Soren T., Sarkar A., Dey R.S., Pandey S., Maiti T.K.	Characterization of Cd-resistant Klebsiella michiganensis MCC3089 and its potential for rice seedling growth promotion under Cd stress.	Microbiol. Res.	210	12-25	2018		
45747	30080640	Kaushal R., Ghosh P.	Oxygen isotope enrichment in rice (Oryza sativa L.) grain organic matter captures signature of relative humidity.	Plant Sci.	274	503-513	2018		
45748	29664146	Herzog M., Fukao T., Winkel A., Konnerup D., Lamichhane S., Alpuerto J.B., Hasler-Sheetal H., Pedersen O.	Physiology, gene expression, and metabolome of two wheat cultivars with contrasting submergence tolerance.	Plant Cell Environ.	41(7)	1632-1644	2018		
45749	29718005	Hu Z., Wang W., Wu Z., Sun C., Li M., Lu J., Fu B., Shi J., Xu J., Ruan J., Wei C., Li Z.	Novel sequences, structural variations and gene presence variations of Asian cultivated rice.	Sci Data	5	180079	2018		
45750	29844344	Ferrari S., Pagliari P., Trettel J.	Optimum Sowing Date and Genotype Testing for Upland Rice Production in Brazil.	Sci Rep	8(1)	8227	2018		
45751	29792958	He M., Qiu C., Liao Z., Sui Z., Corke H.	Impact of cooking conditions on the properties of rice: Combined temperature and cooking time.	Int. J. Biol. Macromol.	117	87-94	2018		
45752	29748895	Xu Y., Wang X., Ding X., Zheng X., Yang Z., Xu C., Hu Z.	Genomic selection of agronomic traits in hybrid rice using an NCII population.	Rice (N Y)	11(1)	32	2018		
45753	29872443	Li F., Xie J., Zhu X., Wang X., Zhao Y., Ma X., Zhang Z., Rashid M.A.R., Zhang Z., Zhi L., Zhang S., Li J., Li Z., Zhang H.	Genetic Basis Underlying Correlations Among Growth Duration and Yield Traits Revealed by GWAS in Rice (<i>Oryza sativa</i> L.).	Front Plant Sci	9	650	2018		
45754	29774045	Cho J.	Transposon-Derived Non-coding RNAs and Their Function in Plants.	Front Plant Sci	9	600	2018		
45755	29929129	Fu Y., Yang X., Shen H.	Root iron plaque alleviates cadmium toxicity to rice (Oryza sativa) seedlings.	Ecotoxicol. Environ. Saf.	161	534-541	2018		
45756	29970347	Meng Q., Gupta R., Min C.W., Kim J., Kramer K., Wang Y., Park S.R., Finkemeier I., Kim S.T.	A proteomic insight into the MSP1 and flg22 induced signaling in Oryza sativa leaves.	J Proteomics			2018		
45757	29888411	Che J., Tsutsui T., Yokosho K., Yamaji N., Ma J.F.	Functional characterization of an aluminum (Al)-inducible transcription factor, ART2, revealed a different pathway for Al tolerance in rice.	New Phytol.	220(1)	209-218	2018	CDT3,LAC3,_,MDR7,ALPHACA5,4NPP1,FRDL4,ZOS12-02,ART2	OsCDT3,OsChI1, ChI1, OsLAC3,,MDR4, OsABCB5, ABCB5, OsPGP5, OsMDR7, OsISC28, MRP4, OsMRP4, OsABCB11, ABCB11, MR7, OsMR7,OsalphaCA5, alphaCA5,Os4NPP1, OsPGLP1, PGLP1,OsFRDL4, MATE,OsART1, STAR3, OsZOS12-02, ART1,OsART2
45758	30172313	Chatterjee P., Samaddar S., Niinemets ?., Sa T.M.	Brevibacterium linens RS16 confers salt tolerance to Oryza sativa genotypes by regulating antioxidant defense and H+ ATPase activity.	Microbiol. Res.	215	89-101	2018		
45759	29924832	Zhang W., Sun P., He Q., Shu F., Deng H.	Transcriptome analysis of near-isogenic line provides novel insights into genes associated with panicle traits regulation in rice.	PLoS ONE	13(6)	e0199077	2018		
45760	29729110	Xu Z., Zhang J., Xu M., Ji W., Yu M., Tao Y., Gong Z., Gu M., Yu H.	Rice rad51 paralogs play essential roles in somatic homologous recombination for DNA repair.	Plant J.	95(2)	282-295	2018	RAD51A2,_,KU70,RAD51D,RAD51C,RAD51B,LIG4,COLD11,_	OsRad51A2, OsRAD51,XRCC3, OsXRCC3,OsKu70, Ku70,OsRAD51D, OsRad51D, OsRAD51D.1, OsRAD51D.2, OsRAD51D.3,OsRAD51C, OsRad51C, RAD51C-1, RAD51C-2, RAD51C-3,OsRAD51B, OsRad51B,OsLig4, Lig4,OsRAD51A1, RAD51A1, OsCOLD11,XRCC2, OsXRCC2
45761	29864161	Tran T.T., P?rez-Quintero AL., Wonni I., Carpenter S.C.D., Yu Y., Wang L., Leach J.E., Verdier V., Cunnac S., Bogdanove A.J., Koebnik R., Hutin M., Szurek B.	Functional analysis of African Xanthomonas oryzae pv. oryzae TALomes reveals a new susceptibility gene in bacterial leaf blight of rice.	PLoS Pathog.	14(6)	e1007092	2018		
45762	29562313	Fang Zhu X., Sheng Zhao X., Wu Q., Fang Shen R.	Abscisic acid is involved in root cell wall phosphorus remobilization independent of nitric oxide and ethylene in rice (Oryza sativa).	Ann. Bot.	121(7)	1361-1368	2018		
45763	29912443	Lee H., Golicz A.A., Bayer P.E., Severn-Ellis AA., Chan C.K., Batley J., Kendrick G.A., Edwards D.	Genomic comparison of two independent seagrass lineages reveals habitat-driven convergent evolution.	J. Exp. Bot.	69(15)	3689-3702	2018		
45764	29983937	Zohoun E.V., Ndindeng S.A., Soumanou M.M., Tang E.N., Bigoga J., Manful J., Sanyang S., Akissoe N.H., Futakuchi K.	Appropriate parboiling steaming time at atmospheric pressure and variety to produce rice with weak digestive properties.	Food Sci Nutr	6(4)	757-764	2018		
45765	29861539	Kar I., Sudhir-Yadav, Mishra A., Behera B., Khanda C., Kumar V., Kumar A.	Productivity trade-off with different water regimes and genotypes of rice under non-puddled conditions in Eastern India.	Field Crops Res.	222	218-229	2018		
45766	29894520	Tao Y., Niu Y., Wang Y., Chen T., Naveed S.A., Zhang J., Xu J., Li Z.	Genome-wide association mapping of aluminum toxicity tolerance and fine mapping of a candidate gene for Nrat1 in rice.	PLoS ONE	13(6)	e0198589	2018		
45767	29926219	Huang B., Zhang J.M., Chen X.L., Xin X., Yin G.K., He J.J., Lu X.X., Zhou Y.C.	Oxidative damage and antioxidative indicators in 48?h germinated rice embryos during the vitrification-cryopreservation procedure.	Plant Cell Rep.			2018	SOD4,FSD1.1 ,NOE1,MDHAR3,APX6,APX3,APX4,CATA,GR1,APX8,SODCC1,DHAR1,SODA1,APX7,GR2,APX2,GR3,CATB,SODCC2	OsSOD4, OsCSD4, OsCu/Zn-SOD1, Cu/Zn-SOD1, OsCSD2, CSD2, OsSOD4-Cu/Zn, SOD4-Cu/Zn, Cu/ZnSOD3, CuZnSOD3, sodCp, OssodCp, OsCu/ZnSOD3, CuZnSOD2, OsSOD1,OsFSD1.1, OsSOD-Fe, SOD-Fe, FeSOD1, OsFSD2, FSD2,CATC, OsCat, OsCatC, OsCATC, OsNOE1, noe1, catC, OsCATC, CAT3, OsCAT3, LLM9428, OsLLM9428,MDHAR, OsMDHAR, OsMDAR3, MDAR3, OsMDHAR3, MDHAR1, OsMDHAR1,OsAPx6, OsAPx06, OSAPX6, APx6,OsAPx3, OsAPx03, OSAPX3, APx3, mAPX,OsAPx4, OsAPx04, OSAPX4, APx4, pAPX4,CATA1, Cat A1*, OSCAT-A, Cat2, CatA1, CAT-A, OsCatA, OsCAT, CAT, catA, OSCATA, OsCATc, OsCATA, OsCAT1A, CAT1, OsCAT1, OsCATC, OsCAT2,OsGR1, OsGR2,OsAPx8, OsAPx08, OSAPX8, APx8, OsAPX8,sodCc1, SODCC.1, sodA, RSODA, OsSOD1, OsCSD2, OsSodA, SodCc2, OsSODA1, SODCc1-Cu/Zn, OsCu/Zn-SOD2, Cu/Zn-SOD2, OsCSD1.2, CSD1.2, OsSODCc1-Cu/Zn, SODCc1-Cu/Zn, CuZnSOD1, Cu/ZnSOD1, OsCu/ZnSOD1, OsCSD4, CDS4, CuZnSOD4, OsCuZnSOD1, OsCSD1, CSD1, OsSOD2,OsDHAR1, DHAR, cytDHAR, OscytDHAR, OsDHAR,SodA1, OsSODA1, Mn-SOD, Mn- SOD, OsMSD, MnSOD, OsMnSOD, MnSOD1, OsMnSOD1,OsAPx7, OsAPx07, OSAPX7, APx7, sAPX,OsGR2, RGRC2, OsGR, OsGR3, OsRGRC2,OsAPX2, OsAPx02, APXb, OsAPx2, OSAPX2, APx2, cAPX, OsAPX1, APX1,OsGR3,CatB, CAT-B, OsCatB, OsCATB, OsCAT1B, CAT1B, CAT2, OsCAT2,Cu/Zn-SOD, Cu/Zn- SOD, OsCu-ZnSOD2, Cu-ZnSOD2, OsSODB, OsSOD3, SodCc2, Os SodCc2, sodB, OsSodB, RSODB, OssodCc1, OsCSD1.1, CSD1.1, OsCDS1, OsSOD3-CU/Zn, SOD3-CU/Zn, CuZnSOD2, Cu/ZnSOD2, OsCu/ZnSOD2, OsCSD1, CSD1, CuZnSOD1, OsCuZnSOD2, OsCSD4, CSD4, OsCSD3, CSD3, Cu/Zn-SOD3
45768	29549445	Wu B., Li L., Qiu T., Zhang X., Cui S.	Cytosolic APX2 is a pleiotropic protein involved in H2O2 homeostasis, chloroplast protection, plant architecture and fertility maintenance.	Plant Cell Rep.	37(6)	833-848	2018		
45769	29907832	Hong S.H., Tripathi B.N., Chung M.S., Cho C., Lee S., Kim J.H., Bai H.W., Bae H.J., Cho J.Y., Chung B.Y., Lee S.S.	Functional switching of ascorbate peroxidase 2 of rice (OsAPX2) between peroxidase and molecular chaperone.	Sci Rep	8(1)	9171	2018		
45770	29851162	Lee K., Hwang O.J., Reiter R.J., Back K.	Flavonoids inhibit both rice and sheep serotonin N-acetyltransferases and reduce melatonin levels in plants.	J. Pineal Res.	65(3)	e12512	2018		
45771	29951845	Das A., Christ B., H?rtensteiner S.	Characterization of the pheophorbide a oxygenase/phyllobilin pathway of chlorophyll breakdown in grasses.	Planta	248(4)	875-892	2018		
45772	29892032	Huang G., Liang W., Sturrock C.J., Pandey B.K., Giri J., Mairhofer S., Wang D., Muller L., Tan H., York L.M., Yang J., Song Y., Kim Y.J., Qiao Y., Xu J., Kepinski S., Bennett M.J., Zhang D.	Rice actin binding protein RMD controls crown root angle in response to external phosphate.	Nat Commun	9(1)	2346	2018		
45773	29856935	Choi J., Summers W., Paszkowski U.	Mechanisms Underlying Establishment of Arbuscular Mycorrhizal Symbioses.	Annu Rev Phytopathol	56	135-160	2018		
45774	29742810	Latimer S., Li Y., Nguyen T.T.H., Soubeyrand E., Fatihi A., Elowsky C.G., Block A., Pichersky E., Basset G.J.	Metabolic reconstructions identify plant 3-methylglutaconyl-CoA hydratase that is crucial for branched-chain amino acid catabolism in mitochondria.	Plant J.	95(2)	358-370	2018		
45775	29903992	Gianinetti A., Finocchiaro F., Maisenti F., Kouongni Satsap D., Morcia C., Ghizzoni R., Terzi V.	The Caryopsis of Red-Grained Rice Has Enhanced Resistance to Fungal Attack.	J Fungi (Basel)	4(2)		2018		
45776	29954122	Kim I., Lee S.C., Kim E.H., Song K., Yang T.J., Kim H.U.	Genome-Wide Identification and Expression Analyses of the Fibrillin Family Genes Suggest Their Involvement in Photoprotection in Cucumber.	Plants (Basel)	7(3)		2018		
45777	29775492	Xu R., Yu H., Wang J., Duan P., Zhang B., Li J., Li Y., Xu J., Lyu J., Li N., Chai T., Li Y.	A mitogen-activated protein kinase phosphatase influences grain size and weight in rice.	Plant J.	95(6)	937-946	2018	DSG1,SMG1,GSN1	OsMAPK6, MAPK6, OsMPK6, OsSIPK, SIPK, OsMAPK1, MAPK1, MPK1, OsMPK1, MPK6, OsDSG1,OsMKK4, MKK4, OsMKK4/SMG1, OsMAPKK4, MAPKK4, OsMEK4, MEK4, OsSMG1, SMG1/OsMEK6, OsMEK6, MEK6, OsSTS, STS,MKP1, OsMKP1, osmkp1, LARGE8, GLA1, OsGLA1
45778	29949846	Praveen A., Gupta M.	Nitric oxide confronts arsenic stimulated oxidative stress and root architecture through distinct gene expression of auxin transporters, nutrient related genes and modulates biochemical responses in Oryza sativa L.	Environ. Pollut.	240	950-962	2018		
45779	29879910	Chen J.Y., Zhang H.W., Zhang H.L., Ying J.Z., Ma L.Y., Zhuang J.Y.	Natural variation at qHd1 affects heading date acceleration at high temperatures with pleiotropism for yield traits in rice.	BMC Plant Biol.	18(1)	112	2018	HD3A,EF1,RFT1,MADS51	Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,FT-L 3, OsFTL3, FTL3, FT-L3, RFT, OsRFT1,OsMADS51, OsMADS65, MADS65, qHd1, DLN36, OsDLN36
45780	29915310	Dar M.H., Zaidi N.W., Waza S.A., Verulkar S.B., Ahmed T., Singh P.K., Roy S.K.B., Chaudhary B., Yadav R., Islam M.M., Iftekharuddaula K.M., Roy J.K., Kathiresan R.M., Singh B.N., Singh U.S., Ismail A.M.	No yield penalty under favorable conditions paving the way for successful adoption of flood tolerant rice.	Sci Rep	8(1)	9245	2018		
45781	29856872	Mogga M., Sibiya J., Shimelis H., Lamo J., Yao N.	Diversity analysis and genome-wide association studies of grain shape and eating quality traits in rice (Oryza sativa L.) using DArT markers.	PLoS ONE	13(6)	e0198012	2018		
45782	29926537	Mao L.J., Chen J.J., Xia C.Y., Feng X.X., Kong D.D., Qi Z.Y., Liu F., Chen D., Lin F.C., Zhang C.L.	Identification and characterization of new Muscodor endophytes from gramineous plants in Xishuangbanna, China.	Microbiologyopen		e00666	2018		
45783	29891831	Qin R., Zeng D., Yang C., Akhter D., Alamin M., Jin X., Shi C.	<i>LTBSG1</i>, a New Allele of <i>BRD2</i>, Regulates Panicle and Grain Development in Rice by Brassinosteroid Biosynthetic Pathway.	Genes (Basel)	9(6)		2018	BRD1,SMG1,CPD1,GL3.1,D61,DLT,D11,LAX2,D2,BU1,BIN2,G1L5,GW8,BRD2,GS5,RLCK173,TGW6,EP3,FZP,MADS47,GW2,DEP1,BLE2	brd1, OsDWARF, DWARF, OsBR6ox, BR6ox, CYP85A1, CYP85A4, OsDWF, CYP85A1/OsDWARF, OsBRD1, OsCYP85A1,OsMKK4, MKK4, OsMKK4/SMG1, OsMAPKK4, MAPKK4, OsMEK4, MEK4, OsSMG1, SMG1/OsMEK6, OsMEK6, MEK6, OsSTS, STS,OsCPD1, CYP90A3, CYP90A3/OsCPD1, CPD, OsCPD2, CPD2,OsPPKL1, PPKL1, qGL3, OsPP54, PP54, OsGL3.1, qGL3/OsPPKL1,d61*, dwf42, d61, OsBRI1, OSBRI1, BRI1, Os BRI1, Osbri1, OsBRKq1, BRKq1,dlt, OsGRAS32, OsDLT, OsDLT1, DTL1, OsGRAS-32, OsGRAS32, GRAS-32, GRAS32, SMOS2/DLT, SMOS2, OsSMOS2, OsGS6, GS6,d11(d8), dwf10, d8, D11/CYP724B1, d11, CYP724B1, GNS4, OsD11, PMM1, OsPMM1, PMM1/D11, NBG4, OsCPB1, CPB1, CPB1/D11,OsLAX2, Gnp4/LAX2, Gnp4,d2, dwf2, CYP90D2, D2/CYP90D2, OsD2, SMG11, OsSMG11, D2/SMG11, OsD2a, OsD2b,ILI4, OsILI4 , OsBU1, BU1/ILI4, OsbHLH172, bHLH172,GSK2, Os GSK2, OsGSK2, Os BIN2, OsBIN2, BIN2/GSK2, OsSK22/OsGSK7, OsSK22, OsGSK7, SK22, GSK7, OsSK22/GSK2 ,OsG1L5, TAW1, OsTAW1,SPL16, OsSPL16, SLP1, OsSLP1, qGW8, OsGW8,brd2, OsBRD2, Dim/dwf1, Dim, dwf1, OsDWF1, DWF1, LTBSG1, OsLTBSG1, LHDD10, OsLHDD10, OsD-LDH3, D-LDH3,OsSCP26, SCP26, OsGS5,OsRLCK173, OsBSK3, BSK3,tgw6, OsSTRL7, STRL7, OsSSL4, SSL4,EP3/LP, LP, OsLP, OsFbox076, OsFbox76, Os_F0106, OsEP3,  OsFBK5, FBK5,fzp*, fzp, OsBD1, BD1, OsERF#078, OsERF078, OsERF78, ERF78, AP2/EREBP#133, AP2/EREBP133, BFL1, SGDP7, OsSGDP7,OsMADS47, OsMDP1, MDP, MDP1,OsGW2, OsRING429, RING429, GNL44, OsGNL44,OsDEP1, EP, qPE9-1, DN1, DEP1/DN1/qPE9-1, qNGR9, qDEP1, RGG4/DEP1/DN1/qPE9-1/OsGGC3, RGG4, OsDN1, OsGGC3, GGC3,OsBLE2
45784	29738099	Hua Z., Doroodian P., Vu W.	Contrasting duplication patterns reflect functional diversities of Ubiquitin and Ubiquitin-like protein modifiers in plants.	Plant J.	95(2)	296-311	2018		
45785	29959585	Singh M., Kumar M., Albertsen M.C., Young J.K., Cigan A.M.	Concurrent modifications in the three homeologs of MS45 gene with CRISPR-Cas9 lead to rapid generation of male sterile bread wheat (Triticum aestivum L.).	Plant Mol. Biol.	97(4-5)	371-383	2018		
45786	29876974	Xie H., Peng X., Qian M., Cai Y., Ding X., Chen Q., Cai Q., Zhu Y., Yan L., Cai Y.	The chimeric mitochondrial gene orf182 causes non-pollen-type abortion in Dongxiang cytoplasmic male-sterile rice.	Plant J.			2018	ORF182	orf182, OsFA182, FA182
45787	29946330	Liu Z., Wang Z., Gu H., You J., Hu M., Zhang Y., Zhu Z., Wang Y., Liu S., Chen L., Liu X., Tian Y., Zhou S., Jiang L., Liu L., Wan J.	Identification and Phenotypic Characterization of <i>ZEBRA LEAF16</i> Encoding a beta-hydroxyacyl-ACP dehydratase in Rice.	Front Plant Sci	9	782	2018	YGL10,HAD2 ,_,RPOA,LM3,SE13,RPOC1,_,HEMA,YGL98,RPOC2,NDHB,PSAA,PORA,CHLH,RBCL,RCA,PIL13,SPL42,PIL15,YS53,GUN4,NDHD,YGL1,YL1,RLIN1,YGL18 ,SE5,PSBA,HEME,RPOB,_,ZL16 ,PIL11	CAO, OsCAO, CAO1, OsCAO1, Oslls1, Lls1, DVR, PGL,OsHAD2,ALAD, HEMB, OsALAD, OsHEMB, hemB,rope, rpoalpha, Rpoalpha, rope, RpoA ,UroD, URO-D, OsLM3, OsUroD, OsURO-D,Se13, OsHY2, OsGUN3, GUN3, PS13,rpoC1, RPO beta', RPObeta', OsRPOC1,OsFLU1, FLU1,HEMA1, OsHEMA, GluTR, OsHEMA1, hemA,OsChlD, ChlD, CHLD, OsCHLD, Ygl7, YGL3, OsvWA12, vWA12,rpoC2, RPO beta", RPObeta",ndhB, NDH2, NADH2,PsaA, psaA, PsAA1, psaA1,OsPorA, OsPORA,OsChlH, ChlH, OsCHLH,rbcL, rbcA, OsrbcL,OsRcaII, rca, rcaII, OsRcaI, RCAI, ME137, OsRCA1, RCA, RCAalpha, OsRCAalpha, OsRCAbeta,OsPIL1, OsPIL13, OsbHLH152, bHLH152, PIF7, OsPIF7, OsPIF4, PIF4, OsPIF1,PBD, PBGD, HEMC, OsSPL42, OsPBGD, OsPBD,OsPIL15, OsbHLH105, PIF3, OsPIF3,GSA, GSAT, HEML, OsGSA, OsGSAT, OsHEML, OsGSAM, GSAM, OsYS53,OsGUN4,ndhD, NdhD, NDH4, NADH4,OsYGL1, CHLG, Ygl1, CS, OsCHLG,MTC, OsMTC, YGL8, OsYGL8, OsCRD1, CRD1, OsCRD, CRD, YL-1, PNZIP, OsPNZIP,CPO, CPOX, LLM1, HEMF, OsRLIN1, OsCPO, OsCPOX, OsLLM1, OsHEMF,ChlM, CHLM, MgMT, OsYGL18,OsChlM, OsCHLM, OsMgMT,Se5, OsHO1, OsHO-1, OsHY1, HO-1, HO1, OsSE5, YGL2, YGL2/HO1,PsbA, psbA, OsPsbA, PSBD1, OsPSBD1, psbD1,OsHEME, hemE, OshemE,rpoB, RpoB, Rpobeta,atpB, AtpB, atpcf1, ATPbeta,OsHAD1, HAD1 ,OsPIL11, OsbHLH102, bHLH102, PIF4, OsPIF4
45788	29958473	Choi B.S., Kim Y.J., Markkandan K., Koo Y.J., Song J.T., Seo H.S.	GW2 Functions as an E3 Ubiquitin ligase for Rice Expansin-Like 1.	Int J Mol Sci	19(7)		2018		
45789	30042882	Reiter M.E., Elliott N.K., Jongsomjit D., Golet G.H., Reynolds M.D.	Impact of extreme drought and incentive programs on flooded agriculture and wetlands in California's Central Valley.	PeerJ	6	e5147	2018		
45790	29566243	Yu C., Chen Y., Cao Y., Chen H., Wang J., Bi Y.M., Tian F., Yang F., Rothstein S.J., Zhou X., He C.	Overexpression of miR169o, an Overlapping MicroRNA in Response to Both Nitrogen Limitation and Bacterial Infection, Promotes Nitrogen Use Efficiency and Susceptibility to Bacterial Blight in Rice.	Plant Cell Physiol.	59(6)	1234-1247	2018		
45791	29915249	Muthuramalingam P., Krishnan S.R., Pandian S., Mareeswaran N., Aruni W., Pandian S.K., Ramesh M.	Global analysis of threonine metabolism genes unravel key players in rice to improve the abiotic stress tolerance.	Sci Rep	8(1)	9270	2018		
45792	29890017	Takeda Y., Tobimatsu Y., Karlen S.D., Koshiba T., Suzuki S., Yamamura M., Murakami S., Mukai M., Hattori T., Osakabe K., Ralph J., Sakamoto M., Umezawa T.	Downregulation of p-COUMAROYL ester 3-hydroxylase in rice leads to altered cell wall structures and improves biomass saccharification.	Plant J.			2018		
45793	30172307	Patel J.K., Madaan S., Archana G.	Antibiotic producing endophytic Streptomyces spp. colonize above-ground plant parts and promote shoot growth in multiple healthy and pathogen-challenged cereal crops.	Microbiol. Res.	215	36-45	2018		
45794	29990741	Xie L., Hao P., Cheng Y., Ahmed I.M., Cao F.	Effect of combined application of lead, cadmium, chromium and copper on grain, leaf and stem heavy metal contents at different growth stages in rice.	Ecotoxicol. Environ. Saf.	162	71-76	2018		
45795	29902676	Badmi R., Sheikh A.H., Bhagat P.K., Verma D., Noryang S., Sinha A.K.	Possible role of plant MAP kinases in the biogenesis and transcription regulation of rice microRNA pathway factors.	Plant Physiol. Biochem.	129	238-243	2018		
45796	30033022	Xiang X., Tao H., Jiang S., Zhang L.H., Cui Z.N.	Synthesis and bioactivity of thiazolidin-2-cyanamide derivatives against type III secretion system of Xanthomonas oryzae on rice.	Pestic Biochem Physiol	149	89-97	2018		
45797	29949665	Qin J., Zhou X., Sun L., Wang K., Yang F., Liao H., Rong W., Yin J., Chen H., Chen X., Zhang J.	The Xanthomonas effector XopK harbours E3 ubiquitin-ligase activity that is required for virulence.	New Phytol.	220(1)	219-231	2018		
45798	29873883	Zhao J., Yuan S., Zhou M., Yuan N., Li Z., Hu Q., Bethea F.G., Liu H., Li S., Luo H.	Transgenic creeping bentgrass overexpressing Osa-miR393a exhibits altered plant development and improved multiple stress tolerance.	Plant Biotechnol. J.			2018		
45799	29498045	Kurokawa Y., Nagai K., Huan P.D., Shimazaki K., Qu H., Mori Y., Toda Y., Kuroha T., Hayashi N., Aiga S., Itoh J.I., Yoshimura A., Sasaki-Sekimoto Y., Ohta H., Shimojima M., Malik A.I., Pedersen O., Colmer T.D., Ashikari M.	Rice leaf hydrophobicity and gas films are conferred by a wax synthesis gene (LGF1) and contribute to flood tolerance.	New Phytol.	218(4)	1558-1569	2018	DRP7	drp7, OsHSD1, LGF1, HSD1
45800	29856853	Han Y., Wu C., Yang L., Zhang D., Xiao Y.	Resistance to Nilaparvata lugens in rice lines introgressed with the resistance genes Bph14 and Bph15 and related resistance types.	PLoS ONE	13(6)	e0198630	2018		
45801	30008605	Thanoi S., Roboon J., Nudmamud-Thanoi S.	Recovery effect of pre-germinated brown rice on the changes of sperm quality, testicular structure and androgen receptor expression in a rat model of drug addiction.	Int J Med Sci	15(9)	921-928	2018		
45802	29546444	Wang S., Ma B., Gao Q., Jiang G., Zhou L., Tu B., Qin P., Tan X., Liu P., Kang Y., Wang Y., Chen W., Liang C., Li S.	Dissecting the genetic basis of heavy panicle hybrid rice uncovered Gn1a and GS3 as key genes.	Theor. Appl. Genet.	131(6)	1391-1403	2018		
45803	29933132	Gupta S.D., Agarwal A., Pradhan S.	Phytostimulatory effect of silver nanoparticles (AgNPs) on rice seedling growth: An insight from antioxidative enzyme activities and gene expression patterns.	Ecotoxicol. Environ. Saf.	161	624-633	2018		
45804	30080612	Chen G., Zhang Y., Ruan B., Guo L., Zeng D., Gao Z., Zhu L., Hu J., Ren D., Yu L., Xu G., Qian Q.	OsHAK1 controls the vegetative growth and panicle fertility of rice by its effect on potassium-mediated sugar metabolism.	Plant Sci.	274	261-270	2018		
45805	30100801	Li J., Zhou J., Xu P., Deng X., Deng W., He M., Yang Y., Zhang Y., Tao D.	Neutral alleles at hybrid sterility loci of <i>Oryza glaberrima</i> from AA genome relatives in Genus <i>Oryza</i>.	Breed. Sci.	68(3)	343-351	2018	S20,S37,S38,S39,S19,S1	S20*, Hst43,S37(t),S38(t),S39(t),,
45806	29942292	Lasudee K., Tokuyama S., Lumyong S., Pathom-Aree W.	Actinobacteria Associated With Arbuscular Mycorrhizal <i>Funneliformis mosseae</i> Spores, Taxonomic Characterization and Their Beneficial Traits to Plants: Evidence Obtained From Mung Bean (<i>Vigna radiata</i>) and Thai Jasmine Rice (<i>Oryza sativa</i>).	Front Microbiol	9	1247	2018		
45807	29912641	Kim Y.O., Kang H.	Comparative expression analysis of genes encoding metallothioneins in response to heavy metals and abiotic stresses in rice (Oryza sativa) and Arabidopsis thaliana.	Biosci. Biotechnol. Biochem.	82(9)	1656-1665	2018		
45808	29957570	Yugandhar P., Sun Y., Liu L., Negi M., Nallamothu V., Sun S., Neelamraju S., Rai V., Jain A.	Characterization of the loss-of-function mutant NH101 for yield under phosphate deficiency from EMS-induced mutants of rice variety Nagina22.	Plant Physiol. Biochem.	130	1-13	2018		
45809	30100797	Fukuda A., Kondo K., Ikka T., Takai T., Tanabata T., Yamamoto T.	A novel QTL associated with rice canopy temperature difference affects stomatal conductance and leaf photosynthesis.	Breed. Sci.	68(3)	305-315	2018		
45810	29928286	Li H., Ji G., Wang Y., Qian Q., Xu J., Sodmergen, Liu G., Zhao X., Chen M., Zhai W., Li D., Zhu L.	WHITE PANICLE3, a Novel Nucleus-Encoded Mitochondrial Protein, Is Essential for Proper Development and Maintenance of Chloroplasts and Mitochondria in Rice.	Front Plant Sci	9	762	2018	RBCL,CAB1R,CYTC1-1,RBCS3,AOX1A,WP3	rbcL, rbcA, OsrbcL,cab1R, LHCP, CAB, OsLhcb1, Lhcb1, Cab1, OsCAB1, Lhcb1b, OsLhcb1b, CAB2R,CytC1-1,RbcS3, OsRBCS3, OsRbcS3, rbcS ,Ao1-1, AOX1a, OsAOX1a, AOX 1a,
45811	29891814	Shi Y., Huang W., Ye H., Ruan C., Xing N., Geng Y., Dong Y., Peng D.	Partial Least Square Discriminant Analysis Based on Normalized Two-Stage Vegetation Indices for Mapping Damage from Rice Diseases Using PlanetScope Datasets.	Sensors (Basel)	18(6)		2018		
45812	30007723	Ye J., Liu C., Luo S., Hu X., McClements D.J.	Modification of the digestibility of extruded rice starch by enzyme treatment (beta-amylolysis): An in vitro study.	Food Res. Int.	111	590-596	2018		
45813	29876699	Buti M., Pasquariello M., Ronga D., Milc J.A., Pecchioni N., Ho V.T., Pucciariello C., Perata P., Francia E.	Transcriptome profiling of short-term response to chilling stress in tolerant and sensitive Oryza sativa ssp. Japonica seedlings.	Funct. Integr. Genomics			2018		
45814	29922319	Bernaola L., Cosme M., Schneider R.W., Stout M.	Belowground Inoculation With Arbuscular Mycorrhizal Fungi Increases Local and Systemic Susceptibility of Rice Plants to Different Pest Organisms.	Front Plant Sci	9	747	2018		
45815	29864538	Sudan S.K., Kumar N., Kaur I., Sahni G.	Production, purification and characterization of raw starch hydrolyzing thermostable acidic alpha-amylase from hot springs, India.	Int. J. Biol. Macromol.	117	831-839	2018		
45816	29899498	Li P., Liu H., Li F., Liao X., Ali S., Hou M.	A virus plays a role in partially suppressing plant defenses induced by the viruliferous vectors.	Sci Rep	8(1)	9027	2018		
45817	29872176	Lv S., Wu W., Wang M., Meyer R.S., Ndjiondjop M.N., Tan L., Zhou H., Zhang J., Fu Y., Cai H., Sun C., Wing R.A., Zhu Z.	Genetic control of seed shattering during African rice domestication.	Nat Plants	4(6)	331-337	2018		
45818	29960182	Chowrasia S., Panda A.K., Rawal H.C., Kaur H., Mondal T.K.	Identification of jumonjiC domain containing gene family among the Oryza species and their expression analysis in FL478, a salt tolerant rice genotype.	Plant Physiol. Biochem.	130	43-53	2018		
45819	30008701	Li P., Ye S., Liu H., Pan A., Ming F., Tang X.	Cultivation of Drought-Tolerant and Insect-Resistant Rice Affects Soil Bacterial, but Not Fungal, Abundances and Community Structures.	Front Microbiol	9	1390	2018		
45820	29943213	Thapa S., Prasanna R., Ramakrishnan B., Sheoran N., Kumar A., Velmourougane K., Kumar A.	Interactive effects of Magnaporthe inoculation and nitrogen doses on the plant enzyme machinery and phyllosphere microbiome of resistant and susceptible rice cultivars.	Arch. Microbiol.	200(9)	1287-1305	2018		
45821	29869742	Gao Y., Wu M., Zhang M., Jiang W., Liang E., Zhang D., Zhang C., Xiao N., Chen J.	Roles of a maize Phytochrome-interacting factors protein ZmPIF3 in regulation of drought stress responses by controlling stomatal closure in transgenic rice without yield penalty.	Plant Mol. Biol.	97(4-5)	311-323	2018		
45822	29761864	Peng C., Wang H., Xu X., Wang X., Chen X., Wei W., Lai Y., Liu G., Godwin I.D., Li J., Zhang L., Xu J.	High-throughput detection and screening of plants modified by gene editing using quantitative real-time polymerase chain reaction.	Plant J.	95(3)	557-567	2018		
45823	29881659	Rahalkar M.C., Patil S., Dhakephalkar P.K., Bahulikar R.A.	Cultivated methanotrophs associated with rhizospheres of traditional rice landraces from Western India belong to <i>Methylocaldum</i> and <i>Methylocysti</i>s.	3 Biotech	8(6)	281	2018		
45824	29908738	Wu Z., Feng X., Li P., Lin C.J., Qiu G., Wang X., Zhao H., Dong H.	Comparison of in vitro digestion methods for determining bioaccessibility of Hg in rice of China.	J Environ Sci (China)	68	185-193	2018		
45825	29973950	Vijayan J., Devanna B.N., Singh N.K., Sharma T.R.	Corrigendum: Cloning and functional validation of early inducible <i>Magnaporthe oryzae</i> responsive <i>CYP76M7</i> promoter from rice.	Front Plant Sci	9	939	2018		
45826	30080633	Filichkin S.A., Ansariola M., Fraser V.N., Megraw M.	Identification of transcription factors from NF-Y, NAC, and SPL families responding to osmotic stress in multiple tomato varieties.	Plant Sci.	274	441-450	2018		
45827	29886196	Huang R., Li Y., Tang G., Hui S., Yang Z., Zhao J., Liu H., Cao J., Yuan M.	Dynamic phytohormone profiling of rice upon rice black-streaked dwarf virus invasion.	J. Plant Physiol.	228	92-100	2018		
45828	29907833	Rao I.S., Neeraja C.N., Srikanth B., Subrahmanyam D., Swamy K.N., Rajesh K., Vijayalakshmi P., Kiran T.V., Sailaja N., Revathi P., Rao P.R., Rao L.V.S., Surekha K., Babu V.R., Voleti S.R.	Identification of rice landraces with promising yield and the associated genomic regions under low nitrogen.	Sci Rep	8(1)	9200	2018		
45829	30271965	Wu Z., Fang D., Yang R., Gao F., An X., Zhuo X., Li Y., Yi C., Zhang T., Liang C., Cui P., Cheng Z., Luo Q.	De novo genome assembly of <i>Oryza granulata</i> reveals rapid genome expansion and adaptive evolution.	Commun Biol	1	84	2018		
45830	29908279	Song N., Xu Z., Wang J., Qin Q., Jiang H., Si W., Li X.	Genome-wide analysis of maize CONSTANS-LIKE gene family and expression profiling under light/dark and abscisic acid treatment.	Gene	673	1-11	2018		
45831	29934776	Ge Y., Han J., Zhou G., Xu Y., Ding Y., Shi M., Guo C., Wu G.	Silencing of miR156 confers enhanced resistance to brown planthopper in rice.	Planta			2018		
45832	29879216	Wang J., Wang J., Wang X., Li R., Chen B.	Proteomic response of hybrid wild rice to cold stress at the seedling stage.	PLoS ONE	13(6)	e0198675	2018		
45833	29616057	Salvador-Guirao R., Hsing Y.I., San Segundo B.	The Polycistronic miR166k-166h Positively Regulates Rice Immunity via Post-transcriptional Control of <i>EIN2</i>.	Front Plant Sci	9	337	2018		
45834	29643863	Liao Y., Bai Q., Xu P., Wu T., Guo D., Peng Y., Zhang H., Deng X., Chen X., Luo M., Ali A., Wang W., Wu X.	Mutation in Rice <i>Abscisic Acid2</i> Results in Cell Death, Enhanced Disease-Resistance, Altered Seed Dormancy and Development.	Front Plant Sci	9	405	2018		
45835	29106443	Tang W., Huang L., Bu S., Zhang X., Wu W.	Estimation of QTL heritability based on pooled sequencing data.	Bioinformatics	34(6)	978-984	2018		
45836	29361035	Cheng S., Tan F., Lu Y., Liu X., Li T., Yuan W., Zhao Y., Zhou D.X.	WOX11 recruits a histone H3K27me3 demethylase to promote gene expression during shoot development in rice.	Nucleic Acids Res.	46(5)	2356-2369	2018		
45837	29870880	Yun H., Lim S., Kim Y.X., Lee Y., Lee S., Lee D., Park K., Sung J.	Diurnal changes in CN metabolism and response of rice seedlings to UV-B radiation.	J. Plant Physiol.	228	66-74	2018		
45838	29365184	Zhao D., Hamilton J.P., Vaillancourt B., Zhang W., Eizenga G.C., Cui Y., Jiang J., Buell C.R., Jiang N.	The unique epigenetic features of Pack-MULEs and their impact on chromosomal base composition and expression spectrum.	Nucleic Acids Res.	46(5)	2380-2397	2018		
45839	29580214	Zhan L.P., Peng D.L., Wang X.L., Kong L.A., Peng H., Liu S.M., Liu Y., Huang W.K.	Priming effect of root-applied silicon on the enhancement of induced resistance to the root-knot nematode Meloidogyne graminicola in rice.	BMC Plant Biol.	18(1)	50	2018		
45840	29373714	Wang Y., Cao L., Zhang Y., Cao C., Liu F., Huang F., Qiu Y., Li R., Luo X.	Corrigendum: Map-based cloning and characterization of BPH29, a B3 domain-containing recessive gene conferring brown planthopper resistance in rice.	J. Exp. Bot.	69(7)	1815	2018		
45841	30271909	Hubbart S., Smillie I.R.A., Heatley M., Swarup R., Foo C.C., Zhao L., Murchie E.H.	Enhanced thylakoid photoprotection can increase yield and canopy radiation use efficiency in rice.	Commun Biol	1	22	2018		
45842	29558397	Wanniarachchi V.R., Dametto L., Sweetman C., Shavrukov Y., Day D.A., Jenkins C.L.D., Soole K.L.	Alternative Respiratory Pathway Component Genes (AOX and ND) in Rice and Barley and Their Response to Stress.	Int J Mol Sci	19(3)		2018		
45843	29361187	Sun X., Zhang Z., Chen C., Wu W., Ren N., Jiang C., Yu J., Zhao Y., Zheng X., Yang Q., Zhang H., Li J., Li Z.	The C-S-A gene system regulates hull pigmentation and reveals evolution of anthocyanin biosynthesis pathway in rice.	J. Exp. Bot.	69(7)	1485-1498	2018		
45844	29575814	Nakaew N., Sungthong R.	Seed phytochemicals shape the community structures of cultivable actinobacteria-inhabiting plant interiors of Thai pigmented rice.	Microbiologyopen	7(4)	e00591	2018		
45845	29532187	Zhang C., Li G., Chen T., Feng B., Fu W., Yan J., Islam M.R., Jin Q., Tao L., Fu G.	Heat stress induces spikelet sterility in rice at anthesis through inhibition of pollen tube elongation interfering with auxin homeostasis in pollinated pistils.	Rice (N Y)	11(1)	14	2018		
45846	29602104	Chen H., Tang Z., Wang P., Zhao F.J.	Geographical variations of cadmium and arsenic concentrations and arsenic speciation in Chinese rice.	Environ. Pollut.	238	482-490	2018		
45847	29546482	Kurt F., Filiz E.	Genome-wide and comparative analysis of bHLH38, bHLH39, bHLH100 and bHLH101 genes in Arabidopsis, tomato, rice, soybean and maize: insights into iron (Fe) homeostasis.	Biometals	31(4)	489-504	2018	IRO2	OsIRO2, OsbHLH056, bHLH056, bHLH56, OsbHLH56
45848	29875603	Mizuno Y., Yamanouchi U., Hoshino T., Nonoue Y., Nagata K., Fukuoka S., Ando T., Yano M., Sugimoto K.	Genetic dissection of pre-harvest sprouting resistance in an upland rice cultivar.	Breed. Sci.	68(2)	200-209	2018		
45849	29327440	Gao Y., Wu M., Zhang M., Jiang W., Ren X., Liang E., Zhang D., Zhang C., Xiao N., Li Y., Dai Y., Chen J.	A maize Phytochrome-interacting factors protein ZmPIF1 enhances drought tolerance by inducing stomatal closure and improves grain yield in Oryza sativa.	Plant Biotechnol. J.	16(7)	1375-1387	2018		
45850	29785071	Mishra P., Singh N., Jain A., Jain N., Mishra V., G P., Sandhya K.P., Singh N.K., Rai V.	Identification of cis-regulatory elements associated with salinity and drought stress tolerance in rice from co-expressed gene interaction networks.	Bioinformation	14(3)	123-131	2018		
45851	29785067	Kaur G., Pati P.K.	<i>In silico</i> physicochemical characterization and topology analysis of Respiratory burst oxidase homolog (Rboh) proteins from Arabidopsis and rice.	Bioinformation	14(3)	93-100	2018		
45852	29567453	Li S., Zhang X., Wang W., Guo X., Wu Z., Du W., Zhao Y., Xia L.	Expanding the Scope of CRISPR/Cpf1-Mediated Genome Editing in Rice.	Mol Plant	11(7)	995-998	2018		
45853	29603592	Wang J., Zeng X., Tian D., Yang X., Wang L., Yin Z.	The pepper Bs4C proteins are localized to the endoplasmic reticulum (ER) membrane and confer disease resistance to bacterial blight in transgenic rice.	Mol. Plant Pathol.			2018		
45854	29594496	Zhang S., Chang M., Zhou Z., Dai X., Xu Z.	pDHS-ELM: computational predictor for plant DNase I hypersensitive sites based on extreme learning machines.	Mol. Genet. Genomics	293(4)	1035-1049	2018		
45855	29616070	Cho S.H., Lee C.H., Gi E., Yim Y., Koh H.J., Kang K., Paek N.C.	The Rice Rolled Fine Striped (RFS) CHD3/Mi-2 Chromatin Remodeling Factor Epigenetically Regulates Genes Involved in Oxidative Stress Responses During Leaf Development.	Front Plant Sci	9	364	2018	SOD2,APX8,FSD1.1 ,NOE1,RFS,PRXIIE2	OsSOD2, OsSOD2-Cu/Zn, SOD2-Cu/Zn, OsCSD3, CSD3, CuZnSOD3, OsCSD2, CSD2, Cu/Zn-SOD2,OsAPx8, OsAPx08, OSAPX8, APx8, OsAPX8,OsFSD1.1, OsSOD-Fe, SOD-Fe, FeSOD1, OsFSD2, FSD2,CATC, OsCat, OsCatC, OsCATC, OsNOE1, noe1, catC, OsCATC, CAT3, OsCAT3, LLM9428, OsLLM9428,rfs, cul7, OsRFS, OsCHR729, CHR729, CHR4, OsCHR4, CRL6, OsCRL, OsCHR4/CHR729, PKR1, OsPHD32, PHD32,Pre IIE2, OsPrxII E2, PrxII E2, OsPrxIIE2, PrxIIE2
45856	29564499	Lee G., Lee K.I., Lee Y., Kim B., Lee D., Seo J., Jang S., Chin J.H., Koh H.J.	Identification of a novel SPLIT-HULL (SPH) gene associated with hull splitting in rice (Oryza sativa L.).	Theor. Appl. Genet.	131(7)	1469-1480	2018	SPH	OsLOX6, LOX6, LOX5, OsLOX5
45857	29550436	Mitra S., Pramanik K., Sarkar A., Ghosh P.K., Soren T., Maiti T.K.	Bioaccumulation of cadmium by Enterobacter sp. and enhancement of rice seedling growth under cadmium stress.	Ecotoxicol. Environ. Saf.	156	183-196	2018		
45858	29736396	Jasim Aljumaili S., Rafii M.Y., Latif M.A., Sakimin S.Z., Arolu I.W., Miah G.	Genetic Diversity of Aromatic Rice Germplasm Revealed By SSR Markers.	Biomed Res Int	2018	7658032	2018		
45859	29596474	Ling L., Jiang Y., Meng J.J., Cai L.M., Cao G.C.	Phloem transport capacity of transgenic rice T1c-19 (Cry1C*) under several potassium fertilizer levels.	PLoS ONE	13(3)	e0195058	2018		
45860	29503500	Horgan F.G., Pe?alver Cruz A., Bernal C.C., Ramal A.F., Almazan M.L.P., Wilby A.	Resistance and tolerance to the brown planthopper, <i>Nilaparvata lugens</i> (St?l), in rice infested at different growth stages across a gradient of nitrogen applications.	Field Crops Res.	217	53-65	2018		
45861	29506473	Chai G., Li C., Xu F., Li Y., Shi X., Wang Y., Wang Z.	Three endoplasmic reticulum-associated fatty acyl-coenzyme a reductases were involved in the production of primary alcohols in hexaploid wheat (Triticum aestivum L.).	BMC Plant Biol.	18(1)	41	2018		
45862	29498672	Tariq R., Wang C., Qin T., Xu F., Tang Y., Gao Y., Ji Z., Zhao K.	Comparative Transcriptome Profiling of Rice Near-Isogenic Line Carrying Xa23 under Infection of Xanthomonas oryzae pv. oryzae.	Int J Mol Sci	19(3)		2018		
45863	29330915	Li Z., Wan G., Wang L., Parajulee M.N., Zhao Z., Chen F.	Effects of seed mixture sowing with resistant and susceptible rice on population dynamics of target planthoppers and non-target stemborers and leaffolders.	Pest Manag. Sci.	74(7)	1664-1676	2018		
45864	29505628	Lin D., Zheng K., Liu Z., Li Z., Teng S., Xu J., Dong Y.	Rice <i>TCM1</i> Encoding a Component of the TAC Complex is Required for Chloroplast Development under Cold Stress.	Plant Genome	11(1)		2018	YGL10,YGL1,PSAA,FGL,V2,RPOTP,RPOB,RBCS,ST1,RBCL,HEMA,FTSZ1,TCM1,PSBA,_,V3,CAB1R	CAO, OsCAO, CAO1, OsCAO1, Oslls1, Lls1, DVR, PGL,OsYGL1, CHLG, Ygl1, CS, OsCHLG,PsaA, psaA, PsAA1, psaA1,fgl(fl), fl, fgl, OsFGL, OsPorB, PoPA, PORA, porA, OsPORA, PORB, OsPORB,v2, mGmk, GMK, Gmk, pt/mtGK, pt/mt GK, OsV2, OsGMK,OsRpo Tp, OsRpoTp, NEP, RpoTp, rpoTP2,rpoB, RpoB, Rpobeta,rbcS, OsRbcS, RBCS-C, RbcS2, OsRBCS2, RbcS1, OsRbcS2, OsrbcS1,st1(ws1), ws1, st1, OsST1, RNRS1, OsRNRS1, rnrs1, RNRS, SDL/RNRS1, SDL, OsSDL, NSL2, OsNSL2,rbcL, rbcA, OsrbcL,HEMA1, OsHEMA, GluTR, OsHEMA1, hemA,FtsZ1, FtsZ, OsFtsZ1, OsFtsZ,OsTCM1,PsbA, psbA, OsPsbA, PSBD1, OsPSBD1, psbD1,PolI-like, OsPoLP1, PoLP1, OsRpoLp, RpoLp,v3, RNRL1, rnrl1, RNR1, RNRL, Osv3, OsRNRL1, OsRNR1, OsRNRL,cab1R, LHCP, CAB, OsLhcb1, Lhcb1, Cab1, OsCAB1, Lhcb1b, OsLhcb1b, CAB2R
45865	29325120	Kobae Y., Kameoka H., Sugimura Y., Saito K., Ohtomo R., Fujiwara T., Kyozuka J.	Strigolactone Biosynthesis Genes of Rice are Required for the Punctual Entry of Arbuscular Mycorrhizal Fungi into the Roots.	Plant Cell Physiol.	59(3)	544-553	2018	D17,D10	d17(t), dwf14, d17, htd1, OsCCD7, CCD7, D17/HTD1, HTD1, OsHTD1, OsD17,d10(d15,d16), d16, d15, dwf9, d10, OsCCD8b, OsCCD8, CCD8, OsD10
45866	29556245	Liu L., Xia W., Li H., Zeng H., Wei B., Han S., Yin C.	Salinity Inhibits Rice Seed Germination by Reducing alpha-amylase Activity via Decreased Bioactive Gibberellin Content.	Front Plant Sci	9	275	2018	GNP1,KO1,KAO,GA2OX2,AMY3B,AMY1C,AMY1A,GA2OX5,AMY3E,KS1,GA2OX1,GA2OX3,GA2OX6,GA2OX9,D18,CPS1	GA20OX1, OsGA20ox1, 20ox1, GA20ox-1, ga20ox1, Os20ox, C20OX2, OsGA20ox2, OsGA20ox-1, GA20ox1, OsGNP1,OsKO1, OSKO1, OSKOL1, OsKOS4, CYP701A7,OsKAO, kao, CYP88A5, OSKAO, Os KAO, RPE1, KO1,OsGA2ox2, ga2ox 2, OsGA2ox-2,Amy3A/B/C*(RAmy3A/B/C), alpha Amy6, AmyII-5, AMY1.6, Amy1.6, Amy3B, BRAmy3A/B/C, Amy3A/B/C*, Amy6, RAmy3B, alphaAmy6-C, OsRamy3B, OsAmy3C,Amy1A/C*(RAmy1A/C), alpha Amy10, Amy1C, RAmy1A/C, Amy1A/C*, Amy3, RAmy1C, OsAmy1C, alphaAmy10-C,Amy1A/C*(RAmy1A/C), alpha Amy7, AMY1.1, Amy1A, RAmy1A/C, Amy1A/C*, Amy1, Amy1A_C, OsAmy1A, alphaAmy7-C, RAmy1A, AmyI-1, OsAmyI-1, OsRamy1A,OsGA2ox5, 2-ODD32, Os2-ODD32, 2ODD32, Os2ODD32,Amy3D/E*(RAmy3D/E), alpha Amy8, alphaAmy8, AmyII-3, AMY1.4, Amy3E, Amy3D/E*, RAmy3D/E, Amy9, RAmy3E, alphaAmy8-C, AMY3E/AMY1.4, OsAmy3E, OsRamy3E,OsKS1, KS1, KS1A, KSL1, OsKSL1, OsKS1A, OsKS1B, OsKS1C, Ks1, Os KS1, OsTPS26, TPS6, OsTPS6,OsGA2ox1, ga2ox-1, OsGA2ox-1, ga2ox, ga2ox 1, GA2ox1,OsGA2ox3, ga2ox 3, OsGA2ox-3, GA2ox3, GA2ox-3, GA2ox4,OsGA2ox6,OsGA2ox9, GA2ox7, 2-ODD35, Os2-ODD35, 2ODD35, Os2ODD35,d18-h  (d18-I, d18h), dwf15, d25, d18, d18-k, d18-AD, d18-dy, OsGA3ox2, ga3ox2, OsGA3OX2, GA3OX2, OsGA3ox-2, GA3ox-2, GA3ox1,OsCPS1, OsCPS1ent, OsCPS, Os CPS1, OsTPS4, TPS4, TPS29, OsTPS29, OsCPS1-L, OsCPS1-S
45867	29875604	Okada S., Onogi A., Iijima K., Hori K., Iwata H., Yokoyama W., Suehiro M., Yamasaki M.	Identification of QTLs for rice grain size using a novel set of chromosomal segment substitution lines derived from Yamadanishiki in the genetic background of Koshihikari.	Breed. Sci.	68(2)	210-218	2018		
45868	29325159	Zhong R., Cui D., Phillips D.R., Ye Z.H.	A Novel Rice Xylosyltransferase Catalyzes the Addition of 2-O-Xylosyl Side Chains onto the Xylan Backbone.	Plant Cell Physiol.	59(3)	554-565	2018	XYXT1,XAT2,XAT3	OsXYXT1,OsXAT2,OsXAT3
45869	29593764	Feng B., Chen K., Cui Y., Wu Z., Zheng T., Zhu Y., Ali J., Wang B., Xu J., Zhang W., Li Z.	Genetic Dissection and Simultaneous Improvement of Drought and Low Nitrogen Tolerances by Designed QTL Pyramiding in Rice.	Front Plant Sci	9	306	2018		
45870	29523952	Li N., Xu R., Duan P., Li Y.	Control of grain size.in rice.	Plant Reproduction	31(3)	237-251	2018		
45871	29559982	Huang Y., Guo Y., Liu Y., Zhang F., Wang Z., Wang H., Wang F., Li D., Mao D., Luan S., Liang M., Chen L.	9-<i>cis</i>-Epoxycarotenoid Dioxygenase 3 Regulates Plant Growth and Enhances Multi-Abiotic Stress Tolerance in Rice.	Front Plant Sci	9	162	2018	NCED1	OSNCED1, OsNCED-1, OsNCED3, OsNced3, NCED3, OsNCED9, NCED9
45872	29511908	Zhai L., Zheng T., Wang X., Wang Y., Chen K., Wang S., Wang Y., Xu J., Li Z.	QTL mapping and candidate gene analysis of peduncle vascular bundle related traits in rice by genome-wide association study.	Rice (N Y)	11(1)	13	2018		
45873	29780215	Tian B., Talukder S.K., Fu J., Fritz A.K., Trick H.N.	Expression of a rice soluble starch synthase gene in transgenic wheat improves the grain yield under heat stress conditions.	In Vitro Cell. Dev. Biol., Plant	54(3)	216-227	2018		
45874	29511225	Khan G.H., Shikari A.B., Vaishnavi R., Najeeb S., Padder B.A., Bhat Z.A., Parray G.A., Bhat M.A., Kumar R., Singh N.K.	Marker-assisted introgression of three dominant blast resistance genes into an aromatic rice cultivar Mushk Budji.	Sci Rep	8(1)	4091	2018		
45875	29518024	Verma S.K., Kingsley K.L., Bergen M.S., Kowalski K.P., White J.F.	Fungal Disease Prevention in Seedlings of Rice (Oryza sativa) and Other Grasses by Growth-Promoting Seed-Associated Endophytic Bacteria from Invasive Phragmites australis.	Microorganisms	6(1)		2018		
45876	29531273	Suralta R.R., Niones J.M., Kano-Nakata M., Thi Tran T., Mitsuya S., Yamauchi A.	Plasticity in nodal root elongation through the hardpan triggered by rewatering during soil moisture fluctuation stress in rice.	Sci Rep	8(1)	4341	2018		
45877	29587643	Walitang D.I., Kim C.G., Kim K., Kang Y., Kim Y.K., Sa T.	The influence of host genotype and salt stress on the seed endophytic community of salt-sensitive and salt-tolerant rice cultivars.	BMC Plant Biol.	18(1)	51	2018		
45878	29576541	Liu C.T., Wang W., Mao B.G., Chu C.C.	Cold stress tolerance in rice: physiological changes, molecular mechanism, and future prospects.	Yi Chuan	40(3)	171-185	2018		
45879	29579100	Ram?rez-Olvera SM., Trejo-T?llez LI., Garc?a-Morales S., P?rez-Sato JA., G?mez-Merino FC.	Cerium enhances germination and shoot growth, and alters mineral nutrient concentration in rice.	PLoS ONE	13(3)	e0194691	2018		
45880	29531264	Ogawa D., Yamamoto E., Ohtani T., Kanno N., Tsunematsu H., Nonoue Y., Yano M., Yamamoto T., Yonemaru J.I.	Haplotype-based allele mining in the Japan-MAGIC rice population.	Sci Rep	8(1)	4379	2018		
45881	29875609	Abe K., Oshima M., Akasaka M., Konagaya K.I., Nanasato Y., Okuzaki A., Taniguchi Y., Tanaka J., Tabei Y.	Development and characterization of transgenic dominant male sterile rice toward an outcross-based breeding system.	Breed. Sci.	68(2)	248-257	2018		
45882	29505639	Rosas J.E., Mart?nez S., Blanco P., P?rez de Vida F., Bonnecarr?re V., Mosquera G., Cruz M., Garaycochea S., Monteverde E., McCouch S., Germ?n S., Jannink J.L., Guti?rrez L.	Resistance to Multiple Temperate and Tropical Stem and Sheath Diseases of Rice.	Plant Genome	11(1)		2018		
45883	29552021	Rho H., Van Epps V., Wegley N., Doty S.L., Kim S.H.	Salicaceae Endophytes Modulate Stomatal Behavior and Increase Water Use Efficiency in Rice.	Front Plant Sci	9	188	2018		
45884	29318739	Liang Y., Liu F., Li J., Cheng Z., Chen H., Wang X., Xiao N., Liu Y.	Coexistence of Bacillus thuringiensis (Bt)-transgenic and conventional rice affects insect abundance and plant fitness in fields.	Pest Manag. Sci.	74(7)	1646-1653	2018		
45885	29556243	Formentin E., Sudiro C., Perin G., Riccadonna S., Barizza E., Baldoni E., Lavezzo E., Stevanato P., Sacchi G.A., Fontana P., Toppo S., Morosinotto T., Zottini M., Lo Schiavo F.	Transcriptome and Cell Physiological Analyses in Different Rice Cultivars Provide New Insights Into Adaptive and Salinity Stress Responses.	Front Plant Sci	9	204	2018		
45886	29522438	Xuan T.D., Khang D.T.	Effects of Exogenous Application of Protocatechuic Acid and Vanillic Acid to Chlorophylls, Phenolics and Antioxidant Enzymes of Rice (Oryza sativa L.) in Submergence.	Molecules	23(3)		2018		
45887	26407527	Wang C., Guo W., Ye S., Wei P., Ow D.W.	Reduction of Cd in Rice through Expression of OXS3-like Gene Fragments.	Mol Plant			2015	SKIN1,O3L5,O3L6,SKIN2,O3L3,O3L7,OXS3,O3L1,O3L4,O3L2	OsSKIN1, OsO3L8, O3L8,OsO3L5,OsO3L6,OsSKIN2, OsO3L9, O3L9,OsO3L3,OsO3L7,OsOXS3,OsO3L1,OsO3L4,OsO3L2
45888	11223257	R Rakwal, G Kumar Agrawal, N S Jwa	Characterization of a rice (Oryza sativa L.) Bowman-Birk proteinase inhibitor: tightly light regulated induction in response to cut, jasmonic acid, ethylene and protein phosphatase 2A inhibitors.	Gene	263(1-2)	189-98	2001	RBBI3-3	RBBI3-3, OsBBPI, BBPI, IBP1.2, OsIBP1.2, OsBBTI5, BBTI5
45889	7742858	Z Y Wang, F Q Zheng, G Z Shen, J P Gao, D P Snustad, M G Li, J L Zhang, M M Hong	The amylose content in rice endosperm is related to the post-transcriptional regulation of the waxy gene.	Plant J.	7(4)	613-22	1995	WX1	wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx
45890	25732590	Yang C., Lu X., Ma B., Chen S.Y., Zhang J.S.	Ethylene Signaling in Rice and Arabidopsis: Conserved and Diverged Aspects.	Mol Plant	8(4)	495-505	2015	EBP-89,_,_,ERF3,ERF77,_,EIL1,FBOX316,ERS1,ETR3,FBOX72,ERF93,EIL4,ETR2,_,EIL2,_,_,_,ERF102,CTR2,EIN2,ETR4,EIL5,EIL3,_,ERF12,ERS2,EIL6	OsEBP-89, ebp-89, OsERF#060, OsERF060, OsERF60, ERF60, AP2/EREBP#027, AP2/EREBP27, OsEBP89, DLN76, OsDLN76,OsCTR3, CTR3,OsEIN2.2, EIN2.2,AP37, OsAP37, OsERF3, OsERF#075, OsERF075, OsERF75, ERF75, AP2/EREBP#004, AP2/EREBP4, OsBIERF2, BIERF2, DLN23, OsDLN23,OsAP2-39, AP2-39, OsERF#077, OsERF077, OsERF77, AP2/EREBP#149, AP2/EREBP149, DLN121, OsDLN121,OsEIN2.4, EIN2.4,OsEIL1, EIN3, OsEIN3, MHZ6, OsEIL1a, EIL1a, OsEIL1b, EIL1b,OsFbox316, Fbox316, Os_F0624, OsEBF1, EBF1,  OsFBL30, FBL30,OS-ERS1, OsERS1, OsERS1a, OsERS1b, OSERS,OsETR3, OsERS4, OS-ETR3, OsETR3a, OsETR3b, PK2, OsPK2, OsETR2;1, ETR2;1,OsFbox072, OsFbox72, Fbox72, Os_F0508, OsEBF2, EBF2,  OsFBL7, FBL7,OsERF1, ERF1, OsERF#093, OsERF093, OsERF93, AP2/EREBP#168, AP2/EREBP168,OsEIL4,etr2, OsPK1, PK1, ERL1, OsETR2, OsERL1, OS-ETR2, OsERS3,OsEIN2.3, EIN2.3,OsEIL2,OsCTR1, CTR1,OsRTH3, RTH3,OsRTH1, RTH1,OsERF#102, OsERF102, AP2/EREBP#123, AP2/EREBP123, OsEATB, EATB,OsCTR2,OsEIN2, MHZ7/OsEIN2, OsEIN2/MHZ7, MHZ7 ,PK3, OsPK3, OsETR4, OS-ETR4,OsEIL5,OsEIL3,OsRTH2, RTH2,OsERF#012, OsERF012, OsERF12, OsDERF1, DERF1, AP2/EREBP#070, AP2/EREBP70,OS-ERS2, OsERS2, OsERS2a, OsERS2b, OsERS2c,OsEIL6
45891	16682641	Cornelius S Barry, James J Giovannoni	Ripening in the tomato Green-ripe mutant is inhibited by ectopic expression of a protein that disrupts ethylene signaling.	Proc. Natl. Acad. Sci. U.S.A.	103(20)	7923-8	2006	_,_,_	OsRTH2, RTH2,OsRTH3, RTH3,OsRTH1, RTH1
45892	29610335	Wang L., Chen H., Wang C., Hu Z., Yan S.	Negative regulator of E2F transcription factors links cell cycle checkpoint and DNA damage repair.	Proc. Natl. Acad. Sci. U.S.A.	115(16)	E3837-E3845	2018	CDC6,E2F1,SNI1,PCNA	OsCDC6,Orysa;E2F1, OsE2F1, DLN58, OsDLN58, OsE2Fa-1, E2Fa-1,OsSNI1,OsPCNA
45893	29893948	Liu X., Lan J., Huang Y., Cao P., Zhou C., Ren Y., He N., Liu S., Tian Y., Nguyen T., Jiang L., Wan J.	WSL5, a pentatricopeptide repeat protein, is essential for chloroplast biogenesis in rice under cold stress.	J. Exp. Bot.	69(16)	3949-3961	2018	WSL5,RPL2,PORA,RPS12	OsWSL5,rpl2,OsPorA, OsPORA,rps12
45894	30002257	Zhang Y., Chen K., Fang-Jie Zhao, Sun C., Jin C., Shi Y., Sun Y., Li Y., Yang M., Jing X., Luo J., Lian X.	OsATX1 Interacts with Heavy Metal P1B-Type ATPases and Affects Copper Transport and Distribution.	Plant Physiol.	178(1)	329-344	2018	ATX1,HMA9,HMA5,HMA6,HMA4	OsATX1, OsaATX1, OsHMP37, HMP37,OsHMA9 ,oshma9-1, oshma9-2, HMA9, OsHMP33, HMP33,OsHMA8, osHMA5, HMA8, OsHMP27, HMP27,OsHMA5, osHMA6, HMA5, OsHMP11, HMP11,OsHMA7, osHMA4, HMA7, OsHMP12, HMP12
45895	30081823	Zeng L., Liu X., Zhou Z., Li D., Zhao X., Zhu L., Luo Y., Hu S.	Identification of a G2-like transcription factor, OsPHL3, functions as a negative regulator of flowering in rice by co-expression and reverse genetic analysis.	BMC Plant Biol.	18(1)	157	2018	SE1,RFT1,HD3A,PHL3,EF1	Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, OsHd1,  Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,FT-L 3, OsFTL3, FTL3, FT-L3, RFT, OsRFT1,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,OsPHL3,Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 
45896	30102358	Zhang T., Feng P., Li Y., Yu P., Yu G., Sang X., Ling Y., Zeng X., Li Y., Huang J., Zhang T., Zhao F., Wang N., Zhang C., Yang Z., Wu R., He G.	VIRESCENT-ALBINO LEAF 1 regulates leaf colour development and cell division in rice.	J. Exp. Bot.	69(20)	4791-4804	2018	VAL1	OsVAL1, PurD, OsPurD
45897	30158538	Wang Y., Luo X., Sun F., Hu J., Zha X., Su W., Yang J.	Overexpressing lncRNA LAIR increases grain yield and regulates neighbouring gene cluster expression in rice.	Nat Commun	9(1)	3516	2018	_,LRK1,LAIR,HAM701	OsWD40-86, WD40-86, OsWDR5a, WDR5a, OsWDR5, WDR5,  OsDWD41, DWD41,OsLRK1, OsPSKR9, PSKR9,,OsHAM701, OsMOF, MOF
45898	30284062	Yu Z., Dong L., Jiang Z., Yi K., Zhang J., Zhang Z., Zhu Z., Wu Y., Xu M., Ni J.	A semi-dominant mutation in a CC-NB-LRR-type protein leads to a short-root phenotype in rice.	Rice (N Y)	11(1)	54	2018	NRTP1	OsNRTP1
45899	29540705	Kuo-Fu Tseng, Wang P., Yuh-Ru Julie Lee, Bowen J., Allison M Gicking, Guo L., Liu B., Qiu W.	The preprophase band-associated kinesin-14 OsKCH2 is a processive minus-end-directed microtubule motor.	Nat Commun	9(1)	1067	2018	KCH2	OsKCH2
45900	29431741	Ajaya K Biswal, Melani A Atmodjo, Li M., Holly L Baxter, Chang Geun Yoo, Pu Y., Yi-Ching Lee, Mazarei M., Ian M Black, Ji-Yi Zhang, Ramanna H., Adam L Bray, Zachary R King, Peter R LaFayette, Pattathil S., Bryon S Donohoe, Sushree S Mohanty, Ryno D., Yee K., Olivia A Thompson, Rodriguez M., Dumitrache A., Natzke J., Winkeler K., Collins C., Yang X., Tan L., Robert W Sykes, Erica L Gjersing, Ziebell A., Geoffrey B Turner, Stephen R Decker, Michael G Hahn, Brian H Davison, Michael K Udvardi, Jonathan R Mielenz, Mark F Davis, Richard S Nelson, Wayne A Parrott, Arthur J Ragauskas, C Neal Stewart, Mohnen D.	Sugar release and growth of biofuel crops are improved by downregulation of pectin biosynthesis.	Nat. Biotechnol.	36(3)	249-257	2018	GAUT4	OsGAUT4, OsGAUT6, GAUT6
45901	29944211	Cai Y., Zhang W., Jin J., Yang X., You X., Yan H., Wang L., Chen J., Xu J., Chen W., Chen X., Ma J., Tang X., Kong F., Zhu X., Wang G., Jiang L., Terzaghi W., Wang C., Wan J.	OsPKpalpha1 encodes a plastidic Pyruvate kinase that affects starch biosynthesis in the rice endosperm.	J Integr Plant Biol	60(11)	1097-1118	2018	PKPA1	OsPKpa1, OsPK2, PK2
45902	30019754	Xiao H., Zhang Q., Qin X., Xu Y., Ni C., Huang J., Zhu L., Zhong F., Liu W., Yao G., Zhu Y., Hu J.	Rice PPS1 encodes a DYW motif-containing pentatricopeptide repeat protein required for five consecutive RNA-editing sites of nad3 in mitochondria.	New Phytol.	220(3)	878-892	2018	PPS1	OsPPS1
45903	30020522	Yuan X., Huang P., Wang R., Li H., Lv X., Duan M., Tang H., Zhang H., Huang J.	A Zinc Finger Transcriptional Repressor Confers Pleiotropic Effects on Rice Growth and drought tolerance by Down-Regulating Stress-Responsive Genes.	Plant Cell Physiol.	59(10)	2129-2142	2018	DRZ1	OsDRZ1, DLN90, OsDLN90
45904	30071144	Fang J., Yuan S., Li C., Jiang D., Zhao L., Peng L., Zhao J., Zhang W., Li X.	Reduction of ATPase activity in the rice kinesin protein Stemless Dwarf?1 inhibits cell division and organ development.	Plant J.	96(3)	620-634	2018	STD1	OsSTD1
45905	30117035	Li K., Chen Y., Luo Y., Huang F., Zhao C., Cheng F., Xiang X., Pan G.	A 22-bp deletion in OsPLS3 gene encoding a DUF266-containing protein is implicated in rice leaf senescence.	Plant Mol. Biol.	98(1-2)	19-32	2018	PLS3	OsPLS3, SPL21, spl21(t), OsSPL21, OsGCNT, GCNT, OsPSL, PSL, C2GNT1, OsC2GNT1
45906	30151559	Hu T., Tian Y., Zhu J., Wang Y., Jing R., Lei J., Sun Y., Yu Y., Li J., Chen X., Zhu X., Hao Y., Liu L., Wang Y., Wan J.	OsNDUFA9 encoding a mitochondrial complex I subunit is essential for embryo development and starch synthesis in rice.	Plant Cell Rep.	37(12)	1667-1679	2018	FLO13	OsNDUFA9, NDUFA9 
45907	30295937	Cui X., Wang Y., Wu J., Han X., Gu X., Lu T., Zhang Z.	The RNA editing factor DUA1 is crucial to chloroplast development at low temperature in rice.	New Phytol.	221(2)	834-849	2019	DUA1	OsDUA1
45908	30298358	Wang X., Zhang H., Lu-Yuan Shao, Yan X., Peng H., Jie-Xiu Ouyang, Shao-Bo Li	Expression and function analysis of a rice oshsp40 gene under salt stress.	Genes Genomics			2018	HSP40	OsHSP40
45909	16504046	Mi-Jeong Yoo, Victor A Albert, Pamela S Soltis, Douglas E Soltis	Phylogenetic diversification of glycogen synthase kinase 3/SHAGGY-like kinase genes in plants.	BMC Plant Biol.	6	3	2006	GSK6,GSK1,SKGAMMA,_,TGW3,SKETHA,GSK9,BIN2,GSK3,GSK4	OsSK13/OsGSK6, OsSK13, OsGSK6, SK13,Os GSK1, OsGSK1, OsSK21/OsGSK1, OsSK21, SK21,OsSKgamma, SKgamma, OsSK11/ OsGSK2, OsSK11, OsGSK2, SK11, GSK2, OsSK12, SK12,OsSKgamma, SKgamma, OsSK11/ OsGSK2, OsSK11, OsGSK2, SK11, GSK2, OsSK12, SK12,GL3.3, OsSK41, SK41, OsGSK5, GSK5, qTGW3, OsTGW3, OsGSK5/OsSK41, OsSK41/OsGSK5, GL3.3/TGW3,GSK4, Os GSK4, OsGSK4, OsSKetha, OsSKETHA, OsSK24/OsGSK8, OsSK24, OsGSK8, SK24, GSK8,OsSK31/OsGSK9, OsSK31, OsGSK9, SK31,GSK2, Os GSK2, OsGSK2, Os BIN2, OsBIN2, BIN2/GSK2, OsSK22/OsGSK7, OsSK22, OsGSK7, SK22, GSK7, OsSK22/GSK2 ,OsSK12/OsGSK3, OsSK12, OsGSK3,  SK12,OsSK23/OsGSK4, OsSK23, OsGSK4, SK23, OsGSK3, GSK3
45910	0	Thitisaksakul M., Maria C. Arias, Dong S., Diane M. Beckles	Overexpression of GSK3-like Kinase 5 (OsGSK5) in rice (Oryza sativa) enhances salinity tolerance in part via preferential carbon allocation to root starch	Funct. Plant Biol.	44	705-719	2017	BIN2,SKETHA,GSK9,GSK4,_,SKGAMMA,GSK3,GSK1,TGW3,GSK6	GSK2, Os GSK2, OsGSK2, Os BIN2, OsBIN2, BIN2/GSK2, OsSK22/OsGSK7, OsSK22, OsGSK7, SK22, GSK7, OsSK22/GSK2 ,GSK4, Os GSK4, OsGSK4, OsSKetha, OsSKETHA, OsSK24/OsGSK8, OsSK24, OsGSK8, SK24, GSK8,OsSK31/OsGSK9, OsSK31, OsGSK9, SK31,OsSK23/OsGSK4, OsSK23, OsGSK4, SK23, OsGSK3, GSK3,OsSKgamma, SKgamma, OsSK11/ OsGSK2, OsSK11, OsGSK2, SK11, GSK2, OsSK12, SK12,OsSKgamma, SKgamma, OsSK11/ OsGSK2, OsSK11, OsGSK2, SK11, GSK2, OsSK12, SK12,OsSK12/OsGSK3, OsSK12, OsGSK3,  SK12,Os GSK1, OsGSK1, OsSK21/OsGSK1, OsSK21, SK21,GL3.3, OsSK41, SK41, OsGSK5, GSK5, qTGW3, OsTGW3, OsGSK5/OsSK41, OsSK41/OsGSK5, GL3.3/TGW3,OsSK13/OsGSK6, OsSK13, OsGSK6, SK13
45911	29991784		The story of African rice, as told by genomics.	Nature	559(7713)	154	2018		
45912	30037991	Huang J., Li J., Zhou J., Wang L., Yang S., Hurst L.D., Li W.H., Tian D.	Identifying a large number of high-yield genes in rice by pedigree analysis, whole-genome sequencing, and CRISPR-Cas9 gene knockout.	Proc. Natl. Acad. Sci. U.S.A.	115(32)	E7559-E7567	2018	_,_,EXPB4,_,EXPB3,DLN239,EXPB6,_,GGT,_,BGLU5,_,_,_,_,_,_,USP22,_,_,EXPB2,_,_,XOAT3	OsbHLH113, bHLH113,,OsEXPB4, OsaEXPb1.7, EXPb1.7,,OsEXPB3, osaEXPb1.10, EXPb1.10,OsDLN239,OsEXPB6, osaEXPb1.8, EXPb1.8,,OsGGT, OsPGSIP-C1, PGSIP-C1,OsSTA41, STA41,Os1bglu5, Os1Bglu5, 1bglu5,,,,,,,OsUSP22,,,OsEXPB2, OsaEXPb1.9, EXPb1.9,,,OsTBL9, TBL9, OsXOAT3
45913	30002253	Kuroha T., Nagai K., Gamuyao R., Wang D.R., Furuta T., Nakamori M., Kitaoka T., Adachi K., Minami A., Mori Y., Mashiguchi K., Seto Y., Yamaguchi S., Kojima M., Sakakibara H., Wu J., Ebana K., Mitsuda N., Ohme-Takagi M., Yanagisawa S., Yamasaki M., Yokoyama R., Nishitani K., Mochizuki T., Tamiya G., McCouch S.R., Ashikari M.	Ethylene-gibberellin signaling underlies adaptation of rice to periodic flooding.	Science	361(6398)	181-186	2018	SD1,EIL1	sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2, OsPHQ1, OsPHq1, PHq1,OsEIL1, EIN3, OsEIN3, MHZ6, OsEIL1a, EIL1a, OsEIL1b, EIL1b
45914	30021872	Hofmann N.R.	The Dynamic Transcriptome: Using Clustered Time Points to Tease Apart Rice Tiller Angle Control.	Plant Cell	30(7)	1381-1382	2018	WOX11,HSFA2D,WOX6,LA1	OsWOX11, Os WOX11, OsWOX12A,HSfA2d, OsHsfA2d, OsHsf-08, rHsf7, HSF08, OsHSF8, HSF8, HSF7, OsHSF7, OsHSFA2dI, OsHSFA2dII, OsHSFA2dIII, OsHsfA6b, HsfA6b, OsHsf2d, Hsf2d,OsWOX6, Os WOX6, OsWOX12B, WOX12B,OsLa1
45915	29967288	Liao Y., Zhang X., Li B., Liu T., Chen J., Bai Z., Wang M., Shi J., Walling J.G., Wing R.A., Jiang J., Chen M.	Comparison of <i>Oryza sativa</i> and <i>Oryza brachyantha</i> Genomes Reveals Selection-Driven Gene Escape from the Centromeric Regions.	Plant Cell	30(8)	1729-1744	2018	_	
45916	30062598	Huang J., Liu H., Berberich T., Liu Y., Tao L.Z., Liu T.	Guanine Nucleotide Exchange Factor 7B (RopGEF7B) is involved in floral organ development in Oryza sativa.	Rice (N Y)	11(1)	42	2018	RAC3,RAC6,RAC5,RAC1,RAC7,RAC2,ROPGEF5	OsRac3,OsRacB, RacB, OsRac6,Osrac5, OsRac5, RACD, OsRacD, OsRACD,OsRAC1, OsRac1, Os Rac1, Rac1, Os-Rac1,OSRAC7, OsRac7, ROP5, OsRop5,OsRAC2, OsRac2,OsRacGEF1, RacGEF1, OsRopGEF5, Os RopGEF5, RopGEF5, OsRopGEF7B, RopGEF7B, OsGEF19, GEF19
45917	29970857	Lin S., Nie P., Ding S., Zheng L., Chen C., Feng R., Wang Z., Wang L., Wang J., Fang Z., Zhou S., Ma H., Zhao H.	Quantitative Proteomic Analysis Provides Insights into Rice Defense Mechanisms against <i>Magnaporthe oryzae</i>.	Int J Mol Sci	19(7)		2018	JIOSPR10,RSOSPR10,_,GPX3,PHGPX,PR10A,_,RLCK178,_,_,CHI7,TRXH,_,APX1,GSTU23,CATB,_,GDH1,ALDH6B2     ,_,_,_,_,PRX65,_,_,GDI1,PSB27,HXK5,AGA3,UVR8B,YCHF1,SCSB,USPA,MDHAR3,_,HSP82A,_	JIOsPR10, OsPR10, PR10, OsJiPR10, JiPR10, OsPR10c, PR10c,RSOsPR10, RsOsPR10a, OsPR10a, OsPR10alpha, OsPR10, PR10, OsBETV1, BETV1,,OsGpx3, GPX3, OsGPx03,OsGpx2, GPX2, OsGPx02, PHGPX, ricPHGPX, riPHGPX ,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,,OsPti1a, Pti1a, OsRLCK178,prx78, PRX78, OsPRX78,prx12, PRX12, OsPRX12,CHI, OsCHI, OsCHI7, OsCHIL2, CHIL2,trxh, Trx-H, OsTRXh1, TRXh1, OsTrxh1, Os1, OsTrx23, Trx23, RPP13-1,prx27, PRX27, OsPRX27 ,OsAPX1, APXa, OsAPXa, OsAPx01, OsAPx1, OSAPX1, APx1, cAPX, APX2, cAPXa, OscAPXa,OsGSTU23,CatB, CAT-B, OsCatB, OsCATB, OsCAT1B, CAT1B, CAT2, OsCAT2,prx125, PRX125, OsPRX125 ,OsGDH1,OsALDH6B2  ,prx62, OsPRX62,prx86, PRX86, OsPRX86,prx59, OsPRX59,POD2, OsPOD2, PRX13, OSPRX13,prx65, OsPRX65,,,OsGDI1,Psb27, OsPSB27, Psb27-H1,OsHXK5,OsAGA3, OsRS4, RS4,OsUVR8b, UVR8b, OsRCC1-2, RCC1-2, OsGEF9, GEF9,OsYchF1, YchF1, OsPM8ATP ,OsSCSb,UspA, OsUspA, OsUSP23, USP23,MDHAR, OsMDHAR, OsMDAR3, MDAR3, OsMDHAR3, MDHAR1, OsMDHAR1,RMtATPd2, OsMtATPd2, MtATPd2,OsHSP82A, hsp82A, HSP90, OsHSP90, OsHSP81, HSP81,
45918	30055519	Zhang Z., Liu H., Sun C., Ma Q., Bu H., Chong K., Xu Y.	A C2H2 zinc-finger protein OsZFP213 interacts with OsMAPK3 to enhance salt tolerance in rice.	J. Plant Physiol.	229	100-110	2018		
45919	30030721	Shahriari-Farfani T., Shahpiri A., Taheri-Kafrani A.	Enhancement of Tryptic Digestibility of Milk beta-Lactoglobulin Through Treatment with Recombinant Rice Glutathione/Thioredoxin and NADPH Thioredoxin Reductase/Thioredoxin Systems.	Appl. Biochem. Biotechnol.	187(2)	649-661	2019	TRX20,TRX1,NTRB,TRXH	OsTRXh9, TRXH9, OsTrx20, Trx20,OsTRXh7, TRXh7, OsTrx1, Trx1, OsTrx01, Trx01,OsNTRB, NtrB,trxh, Trx-H, OsTRXh1, TRXh1, OsTrxh1, Os1, OsTrx23, Trx23, RPP13-1
45920	30060460	Kim D.H., Park S., Lee J.Y., Ha S.H., Lee J.G., Lim S.H.	A Rice B-Box Protein, OsBBX14, Finely Regulates Anthocyanin Biosynthesis in Rice.	Int J Mol Sci	19(8)		2018	PS,BZIP48,_,TTG1A,C	Ra*, bhlh13, OsbHLH013, OsbHLH13, Ra, OSB1, Ra1, OsGL3A, GL3A, OsB2, OsMYC7, MYC7, OsPs, Ps, OsHLH1, HLH1,OsbZIP48, OsHY5, HY5,OsBBX14, BBX14, OsDBB3b, DBB3b,OsWD40-50, WD40-50, OsTTG1A, OsTTG1, TTG1 ,C, Cp, OsC1, Os-C1, C1, OsMyb6, Myb6, OsPL6, PL6, OsGL1E, GL1E, Os2R_MYB63, 2R_MYB63, OsC1PLSr, C1PLSr
45921	29974305	Chen L., Shahid M.Q., Wu J., Chen Z., Wang L., Liu X.	Cytological and transcriptome analyses reveal abrupt gene expression for meiosis and saccharide metabolisms that associated with pollen abortion in autotetraploid rice.	Mol. Genet. Genomics	293(6)	1407-1420	2018	MST6,CDKG1,MST1,HXK10,MST8,CDKF2,RSUS2,HXK7,HXK3,RSUS3,MSH2,HXK1,_,SUT5,MTOPVIB	OsMST6, STP6, OsSTP6,OsCDKG1,OsMST1, OsSTP1, STP1,OsHXK10,OsMST8, OSMST8, OsSTP8, STP8,OsCDKF2,sus2, RSus2(t), SUS2, SS1, OsScS1, RSs1, RSus2, OsSUS2, RSS1, RSus1, OsSusy2, Susy2, OsRSUS1, RSUS1,OsHXK7, OsHXK8,OsHXK3,RSus3(t), SUS3, SS3, OsScS3, RSs3, RSus3, OsSUS3, RSS3, OsEnS-111, Susy3, OsSusy3,OsMSH2,OsHXK1,OsFbox217, Os_F0121, MOF, OsMOF,  OsFBX140, FBX140,OsSUT5(t), OsSUT5Z, OsSUT5,OsMTOPVIB
45922	30061724	Ochiai A., Ogawa K., Fukuda M., Ohori M., Kanaoka T., Tanaka T., Taniguchi M., Sagehashi Y.	Rice Defensin OsAFP1 is a New Drug Candidate against Human Pathogenic Fungi.	Sci Rep	8(1)	11434	2018	CAL1	OsCPT1, CPT1, DEFL7, OsDEFL7, OsDf-07, Df-07, OsPR12, PR12, DEF7, OsDEF7, OsAFP1, AFP1, OsPDF2.2, PDF2.2
45923	30005875	Toyomasu T., Goda C., Sakai A., Miyamoto K., Shenton M.R., Tomiyama S., Mitsuhashi W., Yamane H., Kurata N., Okada K.	Characterization of diterpene synthase genes in the wild rice species Oryza brachyatha provides evolutionary insight into rice phytoalexin biosynthesis.	Biochem. Biophys. Res. Commun.	503(3)	1221-1227	2018		
45924	30245543	Cook F., Hughes N., Nibau C., Orman-Ligeza B., Schatlowski N., Uauy C., Trafford K.	Barley <i>lys3</i> mutants are unique amongst shrunken-endosperm mutants in having abnormally large embryos.	J. Cereal Sci.	82	16-24	2018		
45925	30061746	Zhou C., Wang C., Liu H., Zhou Q., Liu Q., Guo Y., Peng T., Song J., Zhang J., Chen L., Zhao Y., Zeng Z., Zhou D.X.	Identification and analysis of adenine N6-methylation sites in the rice genome.	Nat Plants	4(8)	554-563	2018	ALKBH1	OsALKBH1
45926	30030651	Yang X., Ren Y., Cai Y., Niu M., Feng Z., Jing R., Mou C., Liu X., Xiao L., Zhang X., Wu F., Guo X., Jiang L., Wan J.	Overexpression of OsbHLH107, a member of the basic helix-loop-helix transcription factor family, enhances grain size.in rice (Oryza sativa L.).	Rice (N Y)	11(1)	41	2018	PIL11,MAD2,CDC2-2,CYCA3;2,CYCB2;2,E2F2,CYCA1;1,MCM5,CDKB2;1 ,_,_,MCM2,KN,CYCD7;1,MCM3,_,MCM4,CYCD4;1,LGS1,WD40-109,CYCB1;1,CYCA2;1	OsPIL11, OsbHLH102, bHLH102, PIF4, OsPIF4,OsMAD2,cdc2Os-2, CDC2Os-2, CDKA-2, CDKA;2, Orysa;CDKA;2, Rcdc2-2, OsCDKA;2, OsCDKA2, CDKA2, CDKA;1, OsCDKA;1, CDC20S-2, OsCDC20S-2,OsCYCA3;2, CycA3;2, CycA3;os;2, Orysa;CycA3;2, CYCA2.1, CYCA2;1,cycB2;2 (=cycOs2), cycB2;2, cycOs2, CycB2;2, CycOs2, CYCB2-2, CYCOS2, CycB2-Os2, CYCB2, CycB2;os;2, OsCycB2;2, Orysa;CycB2;2, OsCYCOS2, Os;cycB2;2, CYCB2.2, OsCYCB2.2,Orysa;E2F2, OsE2F2, DLN252, OsDLN252, OsE2Fa-2, E2Fa-2,CycA1;1, CycA1;os;1, Orysa;CycA1;1, CYCA2.3, OscycA1;1, CYCA1-1, OsCYCA1-1,OsMCM5,Orysa;CDKB2;1, OsCDKB2;1, cdc2Os3, Oscdc20s-3, cdc20s-3, Orysa;CDKB;2, CYCB2.1, CDKB-2, OsCDKB-2,CAK1, MAT1, OsCAK1, OsMAT1, CDKA1, OsCDKA1,OsWD40-83, WD40-83, OsCDT2, CDT2,  OsDWD58, DWD58,OsMCM2,OsKN, OsSYP111, SYP111,CycD7;1, CycD7;os;1, Orysa;CycD7;1, OsCYCD3, CYCD3, OsCYCD7;1,OsMCM3,MAPK, MAPK6,OsMCM4,CycD2;1, CYCD2-1, Orysa;CycD2;1, OsCYCD2;1, Orysa;CycD4;1, CycD4;1, CYCD4-1, Orysa;CYCD4;1, cycD, OsCYCD4;1,,OsbHLH107, bHLH107,OsWD40-109, OsCDC20, CDC20, CDC20.1, OsCDC20.1,  OsCDC20-2, CDC20-2, OsCDC20B, CDC20B,CycB1;1, CycB1;os;1, Orysa;CycB1;1, OsCycB1;1, CyclaZm, CYCIaZm, OsCYCIaZm, OsCYCB1;4,CycA2;1, CycA2;os;1, Orysa;CycA2;1, OsCYCA2;1, CYCA2.2
45927	30078233	Minh-Thu PT., Kim J.S., Chae S., Jun K.M., Lee G.S., Kim D.E., Cheong J.J., Song S.I., Nahm B.H., Kim Y.K.	A WUSCHEL Homeobox Transcription Factor, OsWOX13, Enhances Drought Tolerance and Triggers Early Flowering in Rice.	Mol. Cells	41(8)	781-798	2018	HD3A,_,TPS3,BTBN19,_,_,_,DREB1A,PR1-22,DREB1F,MATE16,PMEI14,LRK5,RAP1B,COL15,NAC79,BLR1,FKF1,FTL9,WOX8,SCP44,BAMY1	Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,,OsTPS3, OsLIS, LIS, TPS22, OsTPS22,OsBTBN19,,,,OsDREB1A, Os DREB1A, CBF3, OsCBF3, OsDREB1A/OsCBF3, ERF24, OsERF24, OsERF024, OsERF#024, AP2/EREBP#114, AP2/EREBP114, OsDREBL,OsPR1#022, OsPR1-22,OsERF#027, OsERF027, OsERF27, ERF27, AP2/EREBP#081, AP2/EREBP81, OsDREB1F,OsMATE16,INVINH/PMEI, OsPMEI14,OsLRK5, OsPSKR5, PSKR5,MADS14, OsMADS14, FDRMADS6, RMADS211, AGL10,OsBBX26, BBX26, OsO, OsCCT30, CCT30, OsCOL15, OsCOL15/OsBBX26, Hd1-3,ONAC079, ONAC79, NAC079, OsNAC079,OsbHLH079, OsbHLH79, bHLH079, bHLH79, OsBLR1, OsBCL2, BCL2,OsFbox609, Os_F0370, OsFKF1,  OsFBO10, FBO10,OsFTL9, OsFT-L9, FT-L9,OsWOX8, Os WOX8, OsWOX13, WOX13, OsWOX9B,OsSCP44,OsSTA246, STA246, OsBamy1, Bamy1, BAM2, OsBAM2, OsBmy9, Bmy9, BMY5, OsBMY5
45928	30113022	Li L.H., Lv M.M., Li X., Ye T.Z., He X., Rong S.H., Dong Y.L., Guan Y., Gao X.L., Zhu J.Q., Xu Z.J.	[The Rice OsDUF810 Family: OsDUF810.7 May be Involved in the Tolerance to Salt and Drought].	Mol. Biol. (Mosk.)	52(4)	567-575		DUF810.2,DUF810.4,_,DUF810.7,DUF810.3,DUF810.6,DUF810.5	OsDUF810.2,OsDUF810.4,OsSTA89, STA89, OsDUF810.1, DUF810.1 ,OsDUF810.7,OsDUF810.3,OsDUF810.6,OsDUF810.5
45929	29988153	Yao L., Zhang Y., Liu C., Liu Y., Wang Y., Liang D., Liu J., Sahoo G., Kelliher T.	OsMATL mutation induces haploid seed formation in indica rice.	Nat Plants	4(8)	530-533	2018	MATL	OspPLAIIbeta, pPLAIIbeta, OspPLAIIphi, pPLAIIphi, NLD, PLP1, OspPLAIIphi/PLP1, OsMATL, MTL, OsMTL
45930	29991671	Cho L.H., Yoon J., Wai A.H., An G.	<i>Histone Deacetylase 701 (HDT701)</i> Induces Flowering in Rice by Modulating Expression of <i>OsIDS1</i>.	Mol. Cells	41(7)	665-675	2018	RFT1,HDT701,HD3A,SE1,EF1,GI,IDS1	FT-L 3, OsFTL3, FTL3, FT-L3, RFT, OsRFT1,OsHDT1, HDT701, OsHDT701, ZOS5-12, OsZOS5-12, HDT1,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, OsHd1,  Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,OsGI, Gi, Os-GI,OsIDS1, AP2/EREBP#033, AP2/EREBP33, AP2-33/IDS1, AP2-33, AP2-2, DLN104, OsDLN104
45931	30071224	Yu X., Wei S., Yang Y., Ding Z., Wang Q., Zhao J., Liu X., Chu X., Tian J., Wu N., Fan Y.	Identification of cadmium-binding proteins from rice (Oryza sativa L.).	Int. J. Biol. Macromol.	119	597-603	2018		
45932	30018622	Ricachenevsky F.K., Punshon T., Lee S., Oliveira B.H.N., Trenz T.S., Maraschin F.D.S., Hindt M.N., Danku J., Salt D.E., Fett J.P., Guerinot M.L.	Elemental Profiling of Rice FOX Lines Leads to Characterization of a New Zn Plasma Membrane Transporter, OsZIP7.	Front Plant Sci	9	865	2018	ZIP7	OsZIP7
45933	30026288	Qian D., Chen G., Tian L., Qu L.Q.	OsDER1 Is an ER-Associated Protein Degradation Factor That Responds to ER Stress.	Plant Physiol.	178(1)	402-412	2018	SAR1C,PDIL2-1,SAR1B,_,HSP18.0,SPP1,HSP26,MAL,CDC48E,DER1,HSP70,CRT2,HSP71.1,PSD128,HSP17.3,BIP1,_,HSP70CP1,HRD3,_,SPP2,PDIL5-2,SAR1A	OsARL1d, ARL1d, OsSar1c, Sar1c,PDIL2;1, OsPDIL2;1, OsPDIL2-1, OsTrx17, Trx17,OsARL1f, ARL1f, OsSar1b, Sar1b,,OsHSP18.0-CI, HSP18.0-CI, OsHsp18.0, OsHSP18.0, Oshsp18.0, OsSHSP1, SHSP1, OsMSR3, MSR3, OsHSP20, HSP20, OsHSP18.6, HSP18.6,OsSPP1,OsHSP26, Oshsp26, OsHSP26.7, HSP26.7,HRD1, OsHrd1, Hrd1, OsMAL,  OsRING9, RING9,OsCDC48E, OsCDC48-2, CDC48-2,OsDER1,OsHSP70, OsEnS-45, EnS-45,CRT, OsCRT, CRT-2, OsCRT-2, OsCRT2,OsHsp71.1, OsHSP71.1, OsMED37_3, MED37_3 ,OsCDC48, CDC48, OsCDC48-1, CDC48-1,OsHsp17.3, OsHSP17.3, Oshsp17.3 ,OsBiP1, BiP1, BiP, Bip3, OsBiP3, BIP1/OsBIP3, OsMed37_2, Med37_2 ,HSP70, hsp70, OsHSP70 , OsMed37_8, Med37_8 ,OsHsp70CP1, cpHSP70-1, OsHsp70cp-1, Hsp70cp-1,OsHrd3, Hrd3,OsDER2, DER2,OsSPP2,PDIL5;2, OsPDIL5;2, OsPDIL5-2, OsTrx12, Trx12,OsARL1e, ARL1e, OsSar1b, Sar1b, OsSar1a, Sar1a
45934	30073130	Ashwini N., Sajeevan R.S., Udayakumar M., Nataraja K.N.	Identification of splice variant of <i>OsGBF1</i> in <i>Oryza sativa</i> ssp. <i>indica</i> genotypes under salinity stress.	3 Biotech	8(8)	345	2018	OSBZ8,SKIPA	OsBZ8, OsbZIP05, OsGBF1, GBF1, OsGBF1a, OsGBF1b,OsSKIPa, OsSKIP, SKIP
45935	30043395	Caine R.S., Yin X., Sloan J., Harrison E.L., Mohammed U., Fulton T., Biswal A.K., Dionora J., Chater C.C., Coe R.A., Bandyopadhyay A., Murchie E.H., Swarup R., Quick W.P., Gray J.E.	Rice with reduced stomatal density conserves water and has improved drought tolerance under future climate conditions.	New Phytol.	221(1)	371-384	2019	EPF1	OsEPF1, OsEPF2, EPF2
45936	30068603	Yoshida H., Tanimoto E., Hirai T., Miyanoiri Y., Mitani R., Kawamura M., Takeda M., Takehara S., Hirano K., Kainosho M., Akagi T., Matsuoka M., Ueguchi-Tanaka M.	Evolution and diversification of the plant gibberellin receptor GID1.	Proc. Natl. Acad. Sci. U.S.A.	115(33)	E7844-E7853	2018	GID1,SLR1	gid1, OsGID1, Thl, Os GID1,slr1-1, slr1, slr, GAI, OsGAI, OsSLR1, Os SLR1, OsRGA1, OsGRAS-18, OsGRAS-18, GRAS-18, GRAS18, SLR-1
45937	30111841	Li S., Tian Y., Wu K., Ye Y., Yu J., Zhang J., Liu Q., Hu M., Li H., Tong Y., Harberd N.P., Fu X.	Modulating plant growth-metabolism coordination for sustainable agriculture.	Nature	560(7720)	595-600	2018	XA13,SWEET12,LHCB2.1,TPP1,GS2,AMT1;2,CYCA1;1,LHCA1,GLN1;2,PSAE,SLR1,DYE1,PSBS1,GIF3,CAB1R,GLT2,GS2,AMT1;1,CDKB2;1 ,PSAD,SD1,LHCA3,TPS1	xa13, Xa13, Os8N3, Os-8N3, 8N3, OsSWEET11, SWEET11, OsSWEET11/Xa13, Xa13/Os8N3/SWEET11, Os8N3/Xa13, OsSWEET11/Os8N3, OsSWEET11a, SWEET11a,OsSWEET12,LHCB, LHCP II, Lhcb2, OsLhcb2, Lhcb2.1, OsLhcb2.1 ,OsTPP1, OsTPS, TPP,OsGS2, GLN2, OsGLN2, RGS31, OsRGS31,OsAMT1;2, AMT1-2, Osamt1-3, "OsAMT1,3", OsAMT1;3, OsAMT1.3, OsAMT1.2, AMT1.2,CycA1;1, CycA1;os;1, Orysa;CycA1;1, CYCA2.3, OscycA1;1, CYCA1-1, OsCYCA1-1,OsLhca1, Lhca1,OsGLN1;2, GSr, RGS8, OsGS1;2, GS1;2, GS1, OsGS1-2, GS1-2, OsGS1.2, GS1.2,PsaE, OsPsaE,slr1-1, slr1, slr, GAI, OsGAI, OsSLR1, Os SLR1, OsRGA1, OsGRAS-18, OsGRAS-18, GRAS-18, GRAS18, SLR-1,cab, cab-n8, Lhca4, OsLhca4,OsPsbS1, PsbS1, psbS, OsPSBS,OsGIF3, OsGIF1, GIF1, MKB3,cab1R, LHCP, CAB, OsLhcb1, Lhcb1, Cab1, OsCAB1, Lhcb1b, OsLhcb1b, CAB2R,OsGLT2, OsNADH-GOGAT2, NADH-GOGAT2, OsGOGAT2, GOGAT2, OsGLU2, GLU2,OsGRF4, GRF4, GS2/OsGRF4, PT2, GLW2, GS2/GL2, LGS1, OsLGS1,OsAMT1;1, OsAMT1:1, OsAMT1, AMT1-1, AMT1, OsAMT1p, OsAMT1-1, Osamt1-1, "OsAMT1,1", OsAMT1.1, AMT1.1, FCO12,Orysa;CDKB2;1, OsCDKB2;1, cdc2Os3, Oscdc20s-3, cdc20s-3, Orysa;CDKB;2, CYCB2.1, CDKB-2, OsCDKB-2,PsaD, OsPsaD,sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2, OsPHQ1, OsPHq1, PHq1,OsLhca3, Lhca3,OsTPS1
45938	30082786	Li Z., Fu X., Wang Y., Liu R., He Y.	Polycomb-mediated gene silencing by the BAH-EMF1 complex in plants.	Nat. Genet.	50(9)	1254-1261	2018	CCP1,SHL2,EBL1,SHL1	DFO1, EMF1, OsDFO1, OsEMF1, OsCCP1,OsSHL2, OsPHD17, PHD17,qSSR8, OsEBL1, ES43, OsPHD37, PHD37,OsSHL1, OsPHD34, PHD34
45939	30166490	Deutsch C.A., Tewksbury J.J., Tigchelaar M., Battisti D.S., Merrill S.C., Huey R.B., Naylor R.L.	Increase in crop losses to insect pests in a warming climate.	Science	361(6405)	916-919	2018		
45940	29858585	Zhao Q., Feng Q., Lu H., Li Y., Wang A., Tian Q., Zhan Q., Lu Y., Zhang L., Huang T., Wang Y., Fan D., Zhao Y., Wang Z., Zhou C., Chen J., Zhu C., Li W., Weng Q., Xu Q., Wang Z.X., Wei X., Han B., Huang X.	Publisher Correction: Pan-genome analysis highlights the extent of genomic variation in cultivated and wild rice.	Nat. Genet.	50(8)	1196	2018		
45941	30086362	Zhang H., Ma J., Liu J., Mu Y., Tang H., Liu Y., Chen G., Jiang Q., Chen G., Wei Y., Zheng Y., Lan X.	Molecular characterization of the TaWTG1 in bread wheat (Triticum aestivum L.).	Gene	678	23-32	2018	WTG1	OTUB1, OsOTUB1, OsOTUB1.1, OsOTUB1.2, qNPT1, OsWTG1
45942	30099722	P?rez L., Soto E., Villorbina G., Bassie L., Medina V., Mu?oz P., Capell T., Zhu C., Christou P., Farr? G.	CRISPR/Cas9-induced monoallelic mutations in the cytosolic AGPase large subunit gene APL2 induce the ectopic expression of APL2 and the corresponding small subunit gene APS2b in rice leaves.	Transgenic Res.	27(5)	423-439	2018	AGPL1,AGPL2,PHO1,AGPS2,AGPS1,AGPL4,AGPL3	OsAGPL1, OsAPL1, APL1, OsAGPL3, AGPL3, OsAGPSL3, AGPSL3,OsAGPL2, osagpl2, APL2, OsAPL2, AGPiso, sh2, Sh2, GIF2, GAS1 ,Pho1, OsPho1, OsPHOL, PHOL, OsPHOI, PHOI,OsAGPS2a, AGPS2A, AGPS2B, OsAGPS2, osagps2, APS2, APS2a, APS2b, AGPS2a, APGS2b, OsAGPS2b, AGPP, GAS8, OsAPS2, OsAPS2a, OsAPS2b,OsAGPS1, APS1, OsAPS1, AGPsma,OsAGPL4, APL4, OsAPL4, OsSTA193,OsAGPL3, APL3, OsAPL3, AGPlar, OsAGPL1, AGPL1
45943	30121733	Das N., Bhattacharya S., Bhattacharyya S., Maiti M.K.	Expression of rice MATE family transporter OsMATE2 modulates arsenic accumulation in tobacco and rice.	Plant Mol. Biol.	98(1-2)	101-120	2018	MATE2	OsMATE2
45944	30171448	Deng X., Gan L., Liu Y., Luo A., Jin L., Chen J., Tang R., Lei L., Tang J., Zhang J., Zhao Z.	Locating QTLs controlling overwintering seedling rate in perennial glutinous rice 89-1 (Oryza sativa L.).	Genes Genomics	40(12)	1351-1361	2018		
45945	30127798	Nounjan N., Chansongkrow P., Charoensawan V., Siangliw J.L., Toojinda T., Chadchawan S., Theerakulpisut P.	High Performance of Photosynthesis and Osmotic Adjustment Are Associated With salt tolerance Ability in Rice Carrying drought tolerance QTL: Physiological and Co-expression Network Analysis.	Front Plant Sci	9	1135	2018	_,YS53,F3'H4	,GSA, GSAT, HEML, OsGSA, OsGSAT, OsHEML, OsGSAM, GSAM, OsYS53,OsF3'H4, OsCYP71U11, CYP71U11
45946	30158947	Luo B., Chen J., Zhu L., Liu S., Li B., Lu H., Ye G., Xu G., Fan X.	Overexpression of a High-Affinity Nitrate Transporter <i>OsNRT2.1</i> Increases Yield and Manganese Accumulation in Rice Under Alternating Wet and Dry Condition.	Front Plant Sci	9	1192	2018	LCD1,NRAMP3,NRT2.1,NRAMP6	NRAMP5, OsNRAMP5, OsNramp5, OsLCD1,OsNramp3, OsNRAMP3,OsNRT2.1, OsNRT2.2,OsNRAMP6, Nramp6, l-NRAMP6, s-NRAMP6, OsNramp6.8, OsNramp1
45947	30077370	Amir Hossain M., Ahn C.H., Lee I.S., Jeon J.S., An G., Park P.B.	Isolation of a novel protein phosphatase2C in rice and its response to gibberellin.	Biochem. Biophys. Res. Commun.	503(3)	1987-1992	2018		
45948	30466580	Shi Q.S., Wang K.Q., Li Y.L., Zhou L., Xiong S.X., Han Y., Zhang Y.F., Yang N.Y., Yang Z.N., Zhu J.	OsPKS1 is required for sexine layer formation, which shows functional conservation between rice and Arabidopsis.	Plant Sci.	277	145-154	2018		
45949	30124949	Song S., Wang G., Hu Y., Liu H., Bai X., Qin R., Xing Y.	OsMFT1 increases spikelets per panicle and delays heading date in rice by suppressing Ehd1, FZP and SEPALLATA-like genes.	J. Exp. Bot.	69(18)	4283-4293	2018	EF1,MADS7,MFT1,GHD7,FZP,HD3A,PAP2,MADS24,MADS5,RAP1B,RFT1,LFL1,LHS1	Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,OsMADS7, OsMADS45, FDRMADS1, RMADS216, AGL6, M79, MADS45, Os MADS7, Os MADS45, OsMADS7/45,OsMFT1,Ghd2, Ghd7, OsGhd7, OsCCT26, OsCMF8, OsI, Ghd7/Hd4, Hd4, EH7-1/Hd4, Ghd7-0a, EH7-1, EH7/Ghd7, EH7, OsEH7, GLW7.1, OsGLW7.1,fzp*, fzp, OsBD1, BD1, OsERF#078, OsERF078, OsERF78, ERF78, AP2/EREBP#133, AP2/EREBP133, BFL1, SGDP7, OsSGDP7,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,MADS34, OsMADS34, RMADS212/RMADS217/RMADS221, OsPAP2/MADS34, MADS34/PAP2, PAP2/OsMADS34, OsMADS34/PAP2, OsMADS19,OsMADS24, MADS8, OsMADS8, OsMADS8/24 ,OsMADS5, FDRMADS2,MADS14, OsMADS14, FDRMADS6, RMADS211, AGL10,FT-L 3, OsFTL3, FTL3, FT-L3, RFT, OsRFT1,OsLFL1, OsSTA29, STA29,OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO, OsLHS1, OsLG3b, LG3b, qLGY3, LGY3, DLN80, OsDLN80, OLR, OsOLR, GW3p6, OsGW3p6, OsMADS1GW3p6, MADS1GW3p6, qLGY3/OsLG3b/GW3p6
45950	30210516	Hu Q., Zhang C., Xue Z., Ma L., Liu W., Shen Y., Ma B., Cheng Z.	Osrad17 Is Required for Meiotic Double-Strand Break Repair and Plays a Redundant Role With OsZIP4 in Synaptonemal Complex Assembly.	Front Plant Sci	9	1236	2018	ZIP4,RMC1,_,RAD17,COM1,MSH5,TOP6A1	OsZIP4, SPO22, OsSPO22,MER3, mer3, OsMER3, RCK, OsRCK, Os-MER3,OsRAD1, RAD1 ,OsRAD17,OsCOM1,OsMSH5,OsTOP6A1, OsSPO11-1, OsSPO11A, SPO11-1
45951	30120350	Endo A., Egawa C., Oohashi M., Meguro-Maoka A., Shimosaka E., Sato Y.	Ectopic expression of mutated type 2C protein phosphatase OsABI-LIKE2 decreases abscisic acid sensitivity in Arabidopsis and rice.	Sci Rep	8(1)	12320	2018	PYL/RCAR13,PP2C53	OsPYL/RCAR1, PYL1, OsPYL1, OsPYL4, PYL4,OsPP2C53, OsPP81, OsABIL2, ABIL2
45952	29771278	Ding W., Wu J., Ye J., Zheng W., Wang S., Zhu X., Zhou J., Pan Z., Zhang B., Zhu S.	A Pelota-like gene regulates root development and defence responses in rice.	Ann. Bot.	122(3)	359-371	2018	PR1B,SPLHM47	OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1, OsPR1a, PR1a,splHM47, HM47, OsPelo, OsPELO, PELO, LML1, OsLML1
45953	30151557	Shahpiri A., Mohammadzadeh A.	Bioaccumulation of Arsenic by Engineered Escherichia coli Cells Expressing Rice Metallothionein Isoforms.	Curr. Microbiol.	75(11)	1537-1542	2018	MTI3A,MTII1A,MTI2B,MTI1B	OsMT3a, MT3a, OsMT-I-3a, MT-I-3a, MTe, met2, OsMT3, MT3, OsMTI-3a, MTI-3a,OsMT4, OsMT-II-1a, MT4, MT-II-1a,OsMT2c, OsMT-I-2b, MT2c, MT-I-2b, MTc, met5, ricMT, OsMT2,OsMT1b, MT1b, OsMT-I-1b, OsMTI-1b, MT-I-1b, MTI-1b, MT1La, OsMT1La, OsMT1
45954	30096168	Swamy B.P.M., Descalsota G.I.L., Nha C.T., Amparado A., Inabangan-Asilo MA., Manito C., Tesoro F., Reinke R.	Identification of genomic regions associated with agronomic and biofortification traits in DH populations of rice.	PLoS ONE	13(8)	e0201756	2018		
45955	30158116	Liu Y., Cao Y., Zhang Q., Li X., Wang S.	A Cytosolic Triosephosphate Isomerase Is a Key Component in Xa3/XA26-Mediated Resistance.	Plant Physiol.	178(2)	923-935	2018	WRKY45,C3H12,TPI,WRKY13,DR8,XA3	OsWRKY45, OsWRKY45-1, OsWRKY45-2, WRKY45-1, WRKY45-2,OsC3H12, OsZFP12, ZFP12,tpi*, tips, TI, OsTPI1, TPI1, OsTPI1.1, OsTPI1.2 ,OsWRKY13,OsDR8, OsXNP, FOXRED1,Xa-3, Xa3 (Xa4b, Xa6, Xa9, Xa w), Xa3, Xaw, Xa6, Xa9, Xa4-b, XA26, Xa26(t), Xa26(t)*, Xa26, RKb, MRKb, MRKB, TRKb, Xa3/Xa26
45956	30068540	Xiong H., Yu J., Miao J., Li J., Zhang H., Wang X., Liu P., Zhao Y., Jiang C., Yin Z., Li Y., Guo Y., Fu B., Wang W., Li Z., Ali J., Li Z.	Natural Variation in <i>OsLG3</i> Increases drought tolerance in Rice by Inducing ROS Scavenging.	Plant Physiol.	178(1)	451-467	2018	CATB,ONAC2,RAB16A,BOC1,ITPK4,RAB16C,ERF62,APX8,SODCC2,POX22.3,APX2,DSM1,APX3,SODCC1,MYB48,POX8.1,SODB,PRX16,_,APX6,DHN1,APX1,APX5,LEA17	CatB, CAT-B, OsCatB, OsCATB, OsCAT1B, CAT1B, CAT2, OsCAT2,SNAC1, snac1, OsNAC9, ONAC002, ONAC2, ONAC033, ONAC33, ONAC043, ONAC43, ONAC044, ONAC44, OsNAC19, NAC19, SNAC1/ONAC002, OsSNAC1, OsNAC9, OsNAC1,Rab16A, rab21, RAB21, OsRab21, OsRAB21, OsRAB-21, OsRab16A, OsLEA29, rab16A, OsRAB16A,OsSRO1c, SRO1c, OsBOC1,OsITPK4, OsITP5/6K-4, ITP5/6K-4,rab21, OsLEA27, rab16C, OsRAB16C, DHD,OsERF#062, OsERF062, OsERF62, AP2/EREBP#125, AP2/EREBP125, AP2-125, OsLG3, LG3, OsLG3/OsAP2-125, OsAP2-125, WAP1, OsWAP1, OsSTAP1, STAP1, ERF1, OsERF1,OsAPx8, OsAPx08, OSAPX8, APx8, OsAPX8,Cu/Zn-SOD, Cu/Zn- SOD, OsCu-ZnSOD2, Cu-ZnSOD2, OsSODB, OsSOD3, SodCc2, Os SodCc2, sodB, OsSodB, RSODB, OssodCc1, OsCSD1.1, CSD1.1, OsCDS1, OsSOD3-CU/Zn, SOD3-CU/Zn, CuZnSOD2, Cu/ZnSOD2, OsCu/ZnSOD2, OsCSD1, CSD1, CuZnSOD1, OsCuZnSOD2, OsCSD4, CSD4, OsCSD3, CSD3, Cu/Zn-SOD3,POX22.3, OSPER, OsPOX, POX, Pir3, prx111, POX22, OsPOX1, POX1, OsPOX22.3, OsPR9, PR9,OsAPX2, OsAPx02, APXb, OsAPx2, OSAPX2, APx2, cAPX, OsAPX1, APX1,OsDSM1, OsMAPKKK6, MAPKKK6,OsAPx3, OsAPx03, OSAPX3, APx3, mAPX,sodCc1, SODCC.1, sodA, RSODA, OsSOD1, OsCSD2, OsSodA, SodCc2, OsSODA1, SODCc1-Cu/Zn, OsCu/Zn-SOD2, Cu/Zn-SOD2, OsCSD1.2, CSD1.2, OsSODCc1-Cu/Zn, SODCc1-Cu/Zn, CuZnSOD1, Cu/ZnSOD1, OsCu/ZnSOD1, OsCSD4, CDS4, CuZnSOD4, OsCuZnSOD1, OsCSD1, CSD1, OsSOD2,OsMYB48, OsMYB48-1, OsMYB48-2, OsMYB59, MYB59, Os2R_MYB19, 2R_MYB19 ,POX8.1, prx110, POX8,SodB, Fe-SOD, Fe- SOD, OsFe-SOD, Fe+-SOD, OsFe+-SOD, OsFe-SODa, OsFe-SODb, OsFeSODb, FeSODb, OsFSD1.2, FSD1.2, FeSOD2, OsFSD2, FSD2, OsFSD1, FSD1, ALM1, OsALM1,prx16, OsPRX16, OsPOD1, POD1,prx41, OsPrx41, OsPOX8.1, POX8.1, OsPOD2, POD2,OsAPx6, OsAPx06, OSAPX6, APx6,LIP9, OsLIP9, lip9, DHN1, DIP1, OsDip1, OsLEA23, OsDhn1, COR410, OsLEA23/DIP1, DIP1/OsLEA23,OsAPX1, APXa, OsAPXa, OsAPx01, OsAPx1, OSAPX1, APx1, cAPX, APX2, cAPXa, OscAPXa,OsAPx5, OsAPx05, OSAPX5, APx5,OsLEA17, OsLEA3-2, LEA3-2, LEA1
45957	30092010	Mishra N., Srivastava A.P., Esmaeili N., Hu W., Shen G.	Overexpression of the rice gene OsSIZ1 in Arabidopsis improves drought-, heat-, and salt-tolerance simultaneously.	PLoS ONE	13(8)	e0201716	2018	SIZ1	OsSIZ1, OsSIZ1.1, OsSIZ1.2, OsSIZ1.3, DLN131, OsDLN131, OsPHD23, PHD23
45958	30143992	Jin Y., Pan W., Zheng X., Cheng X., Liu M., Ma H., Ge X.	OsERF101, an ERF family transcription factor, regulates drought stress response in reproductive tissues.	Plant Mol. Biol.	98(1-2)	51-65	2018	LEA3-1,ABA1,ABA8OX3,_,_,P5CS,DREB2A,ERF101,_,OAT	OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3, OsLEA3A, LEA3A,OsABA1, Zep1, OsAba1, Aba2, OsAba2, OsZep1, Zep, OsZep, Aba1, OsABA2, Osaba1, OsZEP-1, OsZEP, OSZEP1, ZEP1, ZEP,OsABA8OX3, OsABA8ox3, CYP707A7, OsCYP707A7, OsAba-ox3, OsABA8ox3, OsABA8'ox3, ABA8'ox3, OsABAX3, ABAX3, OsABA8'OH3, ABA8'OH3,POD2, OsPOD2, PRX13, OSPRX13,RD22, OsBURP03, OsBURP3,OsP5CS, P5CS1, OsP5CS1, OsALDH18B1, ALDH18B1, OsP5CS-1, P5CS-1,OsDREB2A, OsDREB2a, ERF40, OsERF#040, OsERF040, OsERF40, AP2/EREBP#167, AP2/EREBP167,OsERF#101, OsERF101, OsDERF6, DERF6, AP2/EREBP#089, AP2/EREBP89, OsRap2.6, Rap2.6, ERF113, OsERF113, OsERF101/OsRAP2.6,prx46, POD1, OSPOD1,OsOAT, delta-OAT
45959	30127769	Doucour? H., P?rez-Quintero AL., Reshetnyak G., Tekete C., Auguy F., Thomas E., Koebnik R., Szurek B., Koita O., Verdier V., Cunnac S.	Functional and Genome Sequence-Driven Characterization of <i>tal</i> Effector Gene Repertoires Reveals Novel Variants With Altered Specificities in Closely Related Malian <i>Xanthomonas oryzae</i> pv. <i>oryzae</i> Strains.	Front Microbiol	9	1657	2018	XA41,TFX1,ERF123	OsSWEET14, SWEET14, Os11N3, Os-11N3, 11N3, Xa41(t), xa41, Os11N3/SWEET14, OsSWEET14/Os11N3,OsbZIP73, bZIP73, OsTFX1,OsERF#123, OsERF123, AP2/EREBP#066, AP2/EREBP66
45960	30073557	Zhang D., Wang Y., Shen J., Yin J., Li D., Gao Y., Xu W., Liang J.	OsRACK1A, encodes a circadian clock-regulated WD40 protein, negatively affect salt tolerance in rice.	Rice (N Y)	11(1)	45	2018	MSRMK2,CDPK4,TPS8,NCED2,DREB1G,DREB1E,TCP19,RMC,DREB1C,2R_MYB36 ,SIK1,RACK1,ERF91,DREB1B,ERF133,DREB1A,NCED3,ONAC2	OsMSRMK2, OsMAPK5, OsMAP1, OsMPK3, OsBIMK1, OsMAPK2, MPK5, BIMK1, MAPK2, MAPK5, MPK3, OsMPK5, OsMAPK3, OsMAPK5b, MAPK3,OsCDPK4, OsCPK4, CPK4, CDPK1,OsTPS8, OsTPS1, TPS1,OSNCED2, OsNCED2, OsNCED5, NCED5,OsDREB1G, OsERF025, OsERF#025, OsERF25, ERF25, AP2/EREBP#138, AP2/EREBP138, OsDREB1I,OsDREB1E, OsERF030, OsERF#030, OsERF30, ERF30, AP2/EREBP#160, AP2/EREBP160, OsDREB1-1,OsTCP19,OsRMC, OsRLK, OsDUF26, DUF26, OsCBMIP, CBMIP, NCS, OsNCS, OsCRK5, CRK5,OsDREB1C, CBF1, ERF26, OsERF026, OsERF#026, OsERF26, AP2/EREBP#098, AP2/EREBP98, OsCBF2, CBF2,OsMYB2, MYB2, Os2R_MYB36 ,OsSIK1, OsER2, ER2, OsERL, ERL,RACK1A, RWD, OsWD40-21, OsRACK1, OsRACK1A,OsERF#091, OsERF091, OsERF91, AP59, OsAP59, AP2/EREBP#147, AP2/EREBP147, OsBIERF3, BIERF3,OsDREB1B, ERF31, OsERF031, OsERF#031, OsERF31, AP2/EREBP#169, AP2/EREBP169, OsDREB1b, OsDREB1C, OsCBF1, CBF1,OsERF#133, OsERF133, AP2/EREBP#065, AP2/EREBP65, OsDREB1H, DREB1H, OsDREB1m, DREB1m,OsDREB1A, Os DREB1A, CBF3, OsCBF3, OsDREB1A/OsCBF3, ERF24, OsERF24, OsERF024, OsERF#024, AP2/EREBP#114, AP2/EREBP114, OsDREBL,OSNCED3, OsNCED-3, OsNCED3, OsNCED3a, NCED3a, OsNCED4, NCED4, OsNECD2, OsNCED2b, NCED2b ,SNAC1, snac1, OsNAC9, ONAC002, ONAC2, ONAC033, ONAC33, ONAC043, ONAC43, ONAC044, ONAC44, OsNAC19, NAC19, SNAC1/ONAC002, OsSNAC1, OsNAC9, OsNAC1
45961	30159598	Zhou J., Xin X., He Y., Chen H., Li Q., Tang X., Zhong Z., Deng K., Zheng X., Akher S.A., Cai G., Qi Y., Zhang Y.	Multiplex QTL editing of grain-related genes improves yield in elite rice varieties.	Plant Cell Rep.			2018	GW2,GN1A,LK3	OsGW2, OsRING429, RING429, GNL44, OsGNL44,Gn1a, OsCKX2, CKX2, ckx2, Gn1a/OsCKX2, Os CKX2, CKX2/Gn1a,lk3(t), lk3(t)*, SG3, GS3, SG3-GS3, OsGW3, OsGS3, RGG3/GS3/Mi/OsGGC1, RGG3, Mi, OsGGC1, GGC1, OsSYL3, SYL3, TT2, OsTT2
45962	30170113	Cunha J.R., Carvalho F.E.L., Lima-Neto MC., Jardim-Messeder D., Cerqueira J.V.A., Martins M.O., Fontenele A.V., M?rgis-Pinheiro M., Komatsu S., Silveira J.A.G.	Proteomic and physiological approaches reveal new insights for uncover the role of rice thylakoidal APX in response to drought stress.	J Proteomics	192	125-136	2019		
45963	29704467	Ma W., Zou L., Zhiyuan J.I., Xiameng X.U., Zhengyin X.U., Yang Y., Alfano J.R., Chen G.	Xanthomonas oryzae pv. oryzae TALE proteins recruit OsTFIIAgamma1 to compensate for the absence of OsTFIIAgamma5 in bacterial blight in rice.	Mol. Plant Pathol.	19(10)	2248-2262	2018	XA13,XA5,TFIIAGAMMA1,XA41	xa13, Xa13, Os8N3, Os-8N3, 8N3, OsSWEET11, SWEET11, OsSWEET11/Xa13, Xa13/Os8N3/SWEET11, Os8N3/Xa13, OsSWEET11/Os8N3, OsSWEET11a, SWEET11a,xa5, xa-5, Xa5, TFIIAy, OsTFIIAgamma5, TFIIAgamma5, OsTFIIAgamma5/Xa5,OsTFIIAgamma1, OsTFIIAc-1, TFIIAc-1, TFIIAgamma-1,OsSWEET14, SWEET14, Os11N3, Os-11N3, 11N3, Xa41(t), xa41, Os11N3/SWEET14, OsSWEET14/Os11N3
45964	30190374	Tian L., Chou H.L., Zhang L., Hwang S.K., Starkenburg S.R., Doroshenk K.A., Kumamaru T., Okita T.W.	RNA-binding protein RBP-P Is Required for Glutelin and Prolamine mRNA Localization in Rice Endosperm Cells.	Plant Cell	30(10)	2529-2552	2018	RBP-L,PRO10.3,CRL4,ABCB12,PRO16.1,_,_,_,DEFL13,PRO13B.18,RBP-208,PRO13B.1,RR6,IAA6,_,CYSP13,DEFL15,_,DEFL43,_,RBP213,EXPA16,RBP10,RBP-P,NHL25,_,_,NAC129	OsRBP-L,Prol-02, pro10.3, OsPRO10.3,CHARK, S/T kinase, OsCRL4, OsHKL1, OsCDP,OsABCB12, OsPGP12, PGP12,Prol-16, OsEnS-87, EnS-87, pro16.1, OsPRO16.1,,,OsWD40-18, WD40-18, LUG, DLN14, OsDLN14,OsEnS-108, EnS-108, DEFL, OsDEFL13,Prol-12, pro13b.18, OsPRO13B.18,OsRBP-208,Prol-20, pro13b.1, OsPRO13B.1, PROLM19 ,OsRR6, rr6, Rra6, OsRRA6,OsIAA6,GLU4, OsGLU4,CysP13, OsCYSP13, CpP13, PG5a, Prol-06, pro13b.11, OsPRO13B.11, PROLM9, OsPROLM9,OsDEFL15,qTGW1.2a,OsDEFL43,,OsRBP213, RBP-213, OsRBP-213,OsEXPA16, OsEXP16, osaEXPa1.27,OsRBP10, RBP-10, OsRBP-10,  OsDWD42, DWD42,OsRBP-P,OsNHL25,,YR16, YR29, rNBS42,ONAC129, OsNAC129 
45965	30250128	Wang M., Li W., Fang C., Xu F., Liu Y., Wang Z., Yang R., Zhang M., Liu S., Lu S., Lin T., Tang J., Wang Y., Wang H., Lin H., Zhu B., Chen M., Kong F., Liu B., Zeng D., Jackson S.A., Chu C., Tian Z.	Parallel selection on a dormancy gene during domestication of crops from multiple families.	Nat. Genet.	50(10)	1435-1441	2018	G	OsG
45966	30190406	Wang J., Zhou L., Shi H., Chern M., Yu H., Yi H., He M., Yin J., Zhu X., Li Y., Li W., Liu J., Wang J., Chen X., Qing H., Wang Y., Liu G., Wang W., Li P., Wu X., Zhu L., Zhou J.M., Ronald P.C., Li S., Li J., Chen X.	A single transcription factor promotes both yield and immunity in rice.	Science	361(6406)	1026-1028	2018	WRKY45,WFP,DEP1	OsWRKY45, OsWRKY45-1, OsWRKY45-2, WRKY45-1, WRKY45-2,OsSPL14, SPL14, IPA1, WFP/IPA1, OsSPL14/WFP/IPA1, OsIPA1,  IPA1/OsSPL14,OsDEP1, EP, qPE9-1, DN1, DEP1/DN1/qPE9-1, qNGR9, qDEP1, RGG4/DEP1/DN1/qPE9-1/OsGGC3, RGG4, OsDN1, OsGGC3, GGC3
45967	30201704	Kritee K., Nair D., Zavala-Araiza D., Proville J., Rudek J., Adhya T.K., Loecke T., Esteves T., Balireddygari S., Dava O., Ram K., S R A., Madasamy M., Dokka R.V., Anandaraj D., Athiyaman D., Reddy M., Ahuja R., Hamburg S.P.	High nitrous oxide fluxes from rice indicate the need to manage water for both long- and short-term climate impacts.	Proc. Natl. Acad. Sci. U.S.A.	115(39)	9720-9725	2018		
45968	30254029	Dong C., He F., Berkowitz O., Liu J., Cao P., Tang M., Shi H., Wang W., Li Q., Shen Z., Whelan J., Zheng L.	Alternative Splicing Plays a Critical Role in Maintaining Mineral Nutrient Homeostasis in Rice (<i>Oryza sativa</i>).	Plant Cell	30(10)	2267-2285	2018	SCL25,RSZP37A,SCL30A,RSZP21A,SCL57,SCL26,SRP20,SRP33A,_,RSP33,HWI2,RSP29,SRP32,SRP33B,SPX-MFS1,RSZP36,SULTR1;1,MGD2,SCL30B,_,SC35B,RSZP37B,LTN1,SULTR3;2,SC35A,_	Os-SCL25, OsSCL25,Os-RS2Z37, OsRS2Z37, RS2Z37, Os-RSZ37a, OsRSZ37a,Os-SCL30a, OsSCL30a, SCL30a,Os-RSZ21a, OsRSZ21a, Os-RSZp21a, OsRSZp21a, RSZp21a,Os-SCL57, OsSCL57,Os-SCL26, OsSCL26,Os-SR40, OsSR40, SR40, OsSRp20, Os-SRp20, SF2, OsSF2,Os-SR33a, OsSR33a, SR33a, OsSRp33a, Os-SRp33a, OsSR34, SR34,,OsRS33, Os-RS33, OsRSp33, Os-RSp33, RS33, RS33.2,Hwi2, OsHWI2, OsSub9, SUB9,OsRS29, Os-RS29, OsRSp29, Os-RSp29, RSp29,Os-SR32, OsSR32, SR32, OsSRp32, Os-SRp32,Os-SR33, OsSR33, SR33, OsSRp33b, Os-SRp33b,OsSPX-MFS1,Os-RS2Z36, OsRS2Z36, Os-RSZ36, OsRSZ36, RSZ36,OsSultr1;1, OsSul1;1, Sul1;1, OsSultr1;1(a), OsSultr1;1(b),OsMGD, MGD, OsMGD2, OsMGDG3, MGDG3,OsSCL30, Os-SCL30, SCL30, OsSCL30b, Os-SCL30b,OsIRL3, IRL3,OsSC32, Os-SC32, SC32, OsSC35b, Os-SC35b,Os-RS2Z38, OsRS2Z38, Os-RSZ37b, OsRSZ37b,LTN1, OsPHO2, PHO2.1, PHO2.2, PHO2, OsUBC35, UBC35,OsSultr3;2, OsSul3;2,Os-SC34, OsSC34, SC34, Os-SC35a, OsSC35a,OsPOP1, POP1
45969	30242038	Zhu C., Peng Q., Fu D., Zhuang D., Yu Y., Duan M., Xie W., Cai Y., Ouyang Y., Lian X., Wu C.	The E3 Ubiquitin Ligase HAF1 Modulates Circadian Accumulation of EARLY FLOWERING3 to Control heading date in Rice under Long-Day Conditions.	Plant Cell	30(10)	2352-2367	2018	SE1,GHD7,RFT1,HD2,EF1,TOC1,PRR59,HIP1,HD3B,CCA1,GI	Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, OsHd1,  Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,Ghd2, Ghd7, OsGhd7, OsCCT26, OsCMF8, OsI, Ghd7/Hd4, Hd4, EH7-1/Hd4, Ghd7-0a, EH7-1, EH7/Ghd7, EH7, OsEH7, GLW7.1, OsGLW7.1,FT-L 3, OsFTL3, FTL3, FT-L3, RFT, OsRFT1,Hd2(t), Hd2, qHD2(t), OsPRR37, Os-PRR37, PRR37, Prr4, OsPRR4, DTH7, Os DTH7, OsCCT28, CCT28, Ghd7.1, PRR37/Hd2, EH7-2, EH7-2/Hd2, Hd2/PRR37, PRR37-1a, PRR37-1b, PRR37-1c, PRR37-2a, PRR37- 2, HD7.2,Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,OsTOC1, OsPRR1, Os-PRR1, PRR1, OsRRA21, OsCCT07,OsPRR59, Os-PRR59, Prr5, OsPRR5, OsCCT38, CCT38,OsHIP1, HAF1, OsHAF1,  OsRING275, RING275,Hd17, EF7, Ef7, OsELF3-1, ELF3-1, OsELF3, ELF3, ELF3_chr.6, OsELF3.1, ELF3.1, OsELF3a, ELF3a,OsCCA1, OsLHY, LHY, LHY-like_chr.8, COC1, DLN203, OsDLN203, LEM1, OsLEM1, Nhd1, OsNhd1,OsGI, Gi, Os-GI
45970	30190417	Tao Y., Wang J., Miao J., Chen J., Wu S., Zhu J., Zhang D., Gu H., Cui H., Shi S., Xu M., Yao Y., Gong Z., Yang Z., Gu M., Zhou Y., Liang G.	The spermine synthase OsSPMS1 Regulates Seed Germination, grain size, and Yield.	Plant Physiol.	178(4)	1522-1536	2018	SPDS2,SPMS2	OsSPDS2, OsSPMS1, SPMS1,OsSPMS2, OsSPDS3, SPDS3
45971	30237804	Ni E., Zhou L., Li J., Jiang D., Wang Z., Zheng S., Qi H., Zhou Y., Wang C., Xiao S., Liu Z., Zhou H., Zhuang C.	<i>OsCER1</i> Plays a Pivotal Role in Very-Long-Chain Alkane Biosynthesis and Affects Plastid Development and Programmed Cell Death of Tapetum in Rice (<i>Oryza sativa</i> L.).	Front Plant Sci	9	1217	2018	NEF1,LTR1,RAFTIN1,MS2,C6,TDR,ABCG15,CYP704B2,WDA1,BHLH142	Os NEF1, OsNEF1,OsCER1, CER1, OsGL1-4, GL1-4, Os CER1, OsLTR1,OsRAFTIN1, BURP13, OsBURP13, Os RAFTIN1,OsMS2, OsDPW, DPW, DPW1, OsDPW1, OsFAR2, FAR2,Osc6, Osg6B, OsG6B, OsLTPG25, OsLTPg25, OsLtpVII.1, Os C6,tdr, OsbHLH005, bHLH005, OsbHLH5, bhlh5, TDR1, OsTDR, OsTDR1, OsMYC5, MYC5,OsABCG15, PDA, PDA1, OsABCG15/PDA1,OsCYP704B2,OsWDA1, Wda1, wda1, OS-CER1, OsGL1-5,OsbHLH142, bHLH142, TIP2, OsTIP2, TIP2/TDR/bHLH142
45972	30824000	Jia S., Xiong Y., Xiao P., Wang X., Yao J.	OsNF-YC10, a seed preferentially expressed gene regulates grain width by affecting cell proliferation in rice.	Plant Sci.	280	219-227	2019		
45973	30267474	Xiao Y., Liu D., Zhang G., Gao S., Liu L., Xu F., Che R., Wang Y., Tong H., Chu C.	Big Grain3, encoding a purine permease, regulates grain size via modulating cytokinin transport in rice.	J Integr Plant Biol			2018	CYP735A4,PUP7,RR4,RR1,RR2,IPT9,PUP4,LOG1	OsCYP735A4,OsPUP7,rr4, OsRR4, Rra3, OsRRA3,rr1, OsRR1, Rra9, OsRRA9,rr2, Osrr2, OsRR2, Rra10, OsRRA10,OsIPT9, OsIPT5, IPT5,OsPUP4, BG3/OsPUP4, BG3, OsBG3,OsLOG1, LOG, Log, log, OsLOG
45974	30190132	Yang J., Ji L., Zhu B., Yuan X., Jin D., Xie G.	OsCML16 interacts with a novel CC-NBS-LRR protein OsPi304 in the Ca2+/Mg2+ dependent and independent manner in rice.	Biochem. Biophys. Res. Commun.	504(1)	346-351	2018	PI304,CML16	OsPi304,OsCML16
45975	30295905	Zhang Z., Li J., Tang Z., Sun X., Zhang H., Yu J., Yao G., Li G., Guo H., Li J., Wu H., Huang H., Xu Y., Yin Z., Qi Y., Huang R., Yang W., Li Z.	Gnp4/LAX2, a RAWUL protein, interferes with the OsIAA3-OsARF25 interaction to regulate grain length via the auxin signaling pathway in rice.	J. Exp. Bot.	69(20)	4723-4737	2018	GLW7 ,LAX2,IAA17,NGR5,ERF3,ILI6,GW7,ARF6B,ILI5,IAA3	OsSPL13, SPL13, OsGLW7,OsLAX2, Gnp4/LAX2, Gnp4,OsIAA17, OsIAA17q5, IAA17q5,ERF142, OsERF#142, OsERF142, AP2/EREBP#049, AP2/EREBP49, SMOS1, OsSMOS1, SHB, OsAP2-EREBP-049, RLA1, RLA1/SMOS1, OsERF142/SMOS1, OsNGR5, GR5, OsGR5,AP37, OsAP37, OsERF3, OsERF#075, OsERF075, OsERF75, ERF75, AP2/EREBP#004, AP2/EREBP4, OsBIERF2, BIERF2, DLN23, OsDLN23,ILI6, OsILI6, PGL1, OsPGL1,GL7, OsGL7, OsGW7, qGW7, qGL7, SLG7, GL7/GW7/SLG7, qPY7, GL7/SLG7, Chalk7, OsChalk7,OsARF6b, OsARF25, ARF25,ILI5, OsILI5, PGL2, OsPGL2, Os170, OsBUL1, BUL1, ILI5/PGL2, OsbHLH170, bHLH170,OsIAA3
45976	30232356	He Q., Yang L., Hu W., Zhang J., Xing Y.	Overexpression of an auxin receptor OsAFB6 significantly enhanced grain yield by increasing cytokinin and decreasing auxin concentrations in rice panicle.	Sci Rep	8(1)	14051	2018	RFT1,IAA12,IAA11,GN1A,EF1,RR11,D14,JAR2,IAA27,HOX1,TIL1,CKX5,IAA23,IAA30,PIN5B,_,PAP2,IAA8,HAP3F,IAA4,IAA14,GL1,HAP2F,IAA18,IAA28,HD3A,RR1,IAA24	FT-L 3, OsFTL3, FTL3, FT-L3, RFT, OsRFT1,OsIAA12,OsIAA11,Gn1a, OsCKX2, CKX2, ckx2, Gn1a/OsCKX2, Os CKX2, CKX2/Gn1a,Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,OsRR11, Rra8, OsRRA8, RR8,d14(d10), dwf13, d10, d14, D88, HTD2, OsHTD2, OsD14, qPPB3, D88/D14, HTD4,OsJAR2, OsGH3.3, GH3.3, OsGH3-3, JAR2/GH3-3, GH3-3, OsGH3.3/OsJAR2,OsIAA27,Oshox1, OsHox1, OsHDZ38, OsHDZIP38, HDZ38, HDZIP38,NAC2, OsNAC2, ONAC004, ONAC4, ONAC034, ONAC34, ONAC058, ONAC58, OMTN2, Ostil1, OsNAC2/ONAC004, OsORE1.2, DLN113, OsDLN113,OsCKX5, ckx5,OsIAA23,OsIAA30,PIN5C, OsPIN5c, OsPIN5b, PIN4,Os_F0701, OsAFB6, AFB6, OsAFB5, AFB5,  OsFBL70, FBL70,MADS34, OsMADS34, RMADS212/RMADS217/RMADS221, OsPAP2/MADS34, MADS34/PAP2, PAP2/OsMADS34, OsMADS34/PAP2, OsMADS19,OsIAA8,OsHAP3F, NF-YB, CBF-A, NF-YB10, OsNF-YB10, NFYB10,OsIAA4, IAA20, OsIAA20,OsIAA14, AUX/IAA14, OsAUX/IAA14 ,gl1, NUDA/GL-1, NUDA/GL1, NUDA, GL-1, OsWOX3B, OsWOX2, OsWOX3, Os WOX3, WOX3B, WOX2, WOX3, LSY1, OsLSY1, DEP, OsDEP,OsHAP2F, NF-YA, CBF-B, NF-YA10, OsNF-YA10, NFYA10,OsIAA18,OsIAA28,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,rr1, OsRR1, Rra9, OsRRA9,OsIAA24
45977	30466604	Zhu X., Teng X., Wang Y., Hao Y., Jing R., Wang Y., Liu Y., Zhu J., Wu M., Zhong M., Chen X., Zhang Y., Zhang W., Wang C., Wang Y., Wan J.	FLOURY ENDOSPERM11 encoding a plastid heat shock protein 70 is essential for amyloplast development in rice.	Plant Sci.	277	89-99	2018	FLO11,HSP70CP1	OsHsp70CP2, HSP70CP2, OsFLO11, OsFLO11-2, FLO11-2, cpHSP70-2, OsHsp70cp-2, Hsp70cp-2,OsHsp70CP1, cpHSP70-1, OsHsp70cp-1, Hsp70cp-1
45978	29955860	Zahraeifard S., Foroozani M., Sepehri A., Oh D.H., Wang G., Mangu V., Chen B., Baisakh N., Dassanayake M., Smith A.P.	Rice H2A.Z negatively regulates genes responsive to nutrient starvation but promotes expression of key housekeeping genes.	J. Exp. Bot.	69(20)	4907-4919	2018		
45979	30260973	Chithrameenal K., Alagarasan G., Raveendran M., Robin S., Meena S., Ramanathan A., Ramalingam J.	Genetic enhancement of phosphorus starvation tolerance through marker assisted introgression of OsPSTOL1 gene in rice genotypes harbouring bacterial blight and blast resistance.	PLoS ONE	13(9)	e0204144	2018	PIKH,PSTOL1	Pi-kh, Pi k-h, Pi54, Pi54rh, Pi-k(h), Pik-h, Pikh,Pstol1, OsPSTOL1, OsPSTOL, PSTOL, Pstol1/OsPupK46-2, OsPupK46-2, Pup1, PHO
45980	30203325	Chen H.C., Cheng W.H., Hong C.Y., Chang Y.S., Chang M.C.	The transcription factor Osbhlh035 mediates seed germination and enables seedling recovery from salt stress through ABA-dependent and ABA-independent pathways, respectively.	Rice (N Y)	11(1)	50	2018	SKC1,_,_,ABA2,HKT6,ABA8OX1	OsHKT8, HKT8, Os-HKT1;5, OsHKT1;5, HKT1;5, SKC1, qSKC-1(t), OsSKC1,OsbHLH035, bHLH035, OsbHLH35, bHLH35, bHLH107,OsAAO3, AAO3 ,OsABA2, OsSDR, SDR,OsHKT6, OsHKT1;3, HKT1;3, OsHKT1;3_FL, OsHKT1;3_V1, OsHKT1;3_V2, OsHKT1;3_V3, OsHKT1;3_V4, OsHKT1;3_V5,OsABA8OX1, CYP707A5, OsCYP707A5, ABA8ox1, OsABA8ox1, OsABA8'OH1, ABA8'OH1 
45981	30348320	Kappara S., Neelamraju S., Ramanan R.	Down regulation of a heavy metal transporter gene influences several domestication traits and grain Fe-Zn content in rice.	Plant Sci.	276	208-219	2018		
45982	30144334	Liu C., Xue Z., Tang D., Shen Y., Shi W., Ren L., Du G., Li Y., Cheng Z.	Ornithine delta-aminotransferase is critical for floret development and seed setting through mediating nitrogen reutilization in rice.	Plant J.	96(4)	842-854	2018	OAT	OsOAT, delta-OAT
45983	30255457	Zheng X., Chen L., Li X.	Arabidopsis and rice showed a distinct pattern in ZIPs genes expression profile in response to Cd stress.	Botanical Studies	59(1)	22	2018	IRT1,ZIP1,ZIP2,ZIP3,ZIP10,ZIP5,ZIP6,ZIP7,ZIP8,IRT2,ZIP4,_	OsIRT1, ZIP10, OsZIP10, OsZIP12, ZIP12,OsZIP1,OsZIP2, OsZIP11, ZIP11 ,OsZIP3,OsZIP10,OsZIP5, OsZIP8, ZIP8, OsZIP9,OsZIP6,OsZIP7,OsZIP8, OsZIP1, ZIP1, OsZIP13, ZIP13,OsIRT2, OsIRT1, OsZIP15, ZIP15,OsZIP4,OsZIP9, ZIP9
45984	30225642	Kim S.M.	Identification of novel recessive gene xa44(t) conferring resistance to bacterial blight races in rice by QTL linkage analysis using an SNP chip.	Theor. Appl. Genet.	131(12)	2733-2743	2018	XA44	xa44, xa44(t)
45985	30232619	Kumar D., Das P.K., Sarmah B.K.	Reference gene validation for normalization of RT-qPCR assay associated with germination and survival of rice under hypoxic condition.	J. Appl. Genet.	59(4)	419-430	2018	RFA2,GAPC2	rfa2*, REFA2, refa2, OsEF1alpna, EF1alpna,GAPDH, OsGAPDH, OsGapC2
45986	30212759	Song T., Zhang Q., Wang H., Han J., Xu Z., Yan S., Zhu Z.	OsJMJ703, a rice histone demethylase gene, plays key roles in plant development and responds to drought stress.	Plant Physiol. Biochem.	132	183-188	2018		
45987	30294335	Descalsota G.I.L., Swamy B.P.M., Zaw H., Inabangan-Asilo MA., Amparado A., Mauleon R., Chadha-Mohanty P., Arocena E.C., Raghavan C., Leung H., Hernandez J.E., Lalusin A.B., Mendioro M.S., Diaz M.G.Q., Reinke R.	Genome-Wide Association Mapping in a Rice MAGIC Plus Population Detects QTLs and Genes Useful for Biofortification.	Front Plant Sci	9	1347	2018		
45988	30341148	Farquharson K.L.	Loss of a Silencing Cascade Contributed to Indica Rice Domestication.	Plant Cell	30(11)	2643	2018	MIR397B,MIR397A	miR397b, osa-miR397b, osa-MIR397b, miR397b*, OsmiR397b, Os-MIR397b,miR397a, osa-miR397a, osa-MIR397a, OsmiR397a
45989	30393190	Islam M.O., Kato H., Shima S., Tezuka D., Matsui H., Imai R.	Functional identification of a rice trehalase gene involved in salt stress tolerance.	Gene	685	42-49	2019	TRE1	OsTRE, OsTRE1, TRE
45990	30275327	Li Y., Qin B., Shen Y., Zhang F., Liu C., You H., Du G., Tang D., Cheng Z.	HEIP1 regulates crossover formation during meiosis in rice.	Proc. Natl. Acad. Sci. U.S.A.	115(42)	10810-10815	2018	ZIP4,MSH5,RMC1,AGG1,HEI10	OsZIP4, SPO22, OsSPO22,OsMSH5,MER3, mer3, OsMER3, RCK, OsRCK, Os-MER3,OsHEIP1, HEIP1, OsAGG1, OsAGG1.1, OsAGG1.2,HEI10A, HEI10B, OsHEI10,  OsRING434, RING434
45991	30327513		World's littlest light-sensing gyroscope fits on a grain of rice.	Nature	562(7727)	311	2018		
45992	30275307	Liu J., Wu X., Yao X., Yu R., Larkin P.J., Liu C.M.	Mutations in the DNA demethylase <i>OsROS1</i> result in a thickened aleurone and improved nutritional value in rice grains.	Proc. Natl. Acad. Sci. U.S.A.	115(44)	11327-11332	2018	RISBZ1,TA2,RPBF	OsbZIP58, bZIP58, OsEnS-92, OsSMF1, SMF1, OsRISBZ1, RISBZ1/bZIP58,ROS1A, ROS1a, DME1, OsROS1A, OsROS1, ROS1, mOsROS1, ROS1A/DNG702, DNG702, OsDNG702,OsDof3, OsDOF3, OsEnS-34, OsDof10, Dof10, OsDof-10, OsDOF1, DOF1, DOF3, OsRPBF, OsDOF7
45993	30367983	Wang X., Chen J., Liu C., Luo J., Yan X., Aihua Ai, Cai Y., Xie H., Ding X., Peng X.	Over-expression of a protein disulfide isomerase gene from Methanothermobacter thermautotrophicus, enhances heat stress tolerance in rice.	Gene	684	124-130	2019		
45994	30341147	Swetha C., Basu D., Pachamuthu K., Tirumalai V., Nair A., Prasad M., Shivaprasad P.V.	Major Domestication-Related Phenotypes in <i>Indica</i> Rice Are Due to Loss of miRNA-Mediated Laccase Silencing.	Plant Cell	30(11)	2649-2662	2018	LAC8,MIR397A,LAC14,LAC3,MIR397B,LAC11	OsLAC8, OsLAC7, LAC7,miR397a, osa-miR397a, osa-MIR397a, OsmiR397a,OsLAC14, OsLAC13, LAC13,OsChI1, ChI1, OsLAC3,miR397b, osa-miR397b, osa-MIR397b, miR397b*, OsmiR397b, Os-MIR397b,Lac, OsLAC11, LAC10, OsLAC10
45995	30355769	Guo L., Cesari S., de Guillen K., Chalvon V., Mammri L., Ma M., Meusnier I., Bonnot F., Padilla A., Peng Y.L., Liu J., Kroj T.	Specific recognition of two MAX effectors by integrated HMA domains in plant immune receptors involves distinct binding surfaces.	Proc. Natl. Acad. Sci. U.S.A.	115(45)	11637-11642	2018	PIKP,RGA5,PICO39	Pik-p, Pi-kp, Pikp, Pikp-1, Pikp-2,Os11gRGA5, OsRGA5, RGA5-A, RGA5-B, Pi5, Pias-2,PiCO39(t), Pi-CO39, Pi-CO39(t), pi-CO39(t)
45996	30359793	Shah M.N.A., Arabia S., Islam T., Ghosh A.	Molecular evolution of SUN-domain containing proteins in diverse plant species and their expression profiling in response to developmental and perturbation stimuli.	Phytochemistry	157	28-42	2019	SUN5,SUN3,SUN1,_	OsSUN5,OsSUN3, OsSUN3.1, OsSUN3.2, OsSUN3.3, OsSUN3.4,OsSUN1, OsSUN2, SUN2,OsSAD1, SAD1, OsSUN2, SUN2, OsSUN1, SUN1
45997	30389557	Guan S., Xu Q., Ma D., Zhang W., Xu Z., Zhao M., Guo Z.	Transcriptomics profiling in response to cold stress in cultivated rice and weedy rice.	Gene	685	96-105	2019	TCD11,_,CIGR1,_,LEA9,_,ONAC2,WRKY5,_,WRKY14,_,_,ERF77,TRZ2,GATL6,_,_,NAC1,IRO2,_,ILI5,WRKY90,MPK7,_,OXS3,MKK5,RAI1	RPS6, OsRPS6, OsTCD11,,OsCIGR1, OsGRAS-34, OsGRAS34, GRAS-34, GRAS34,,OsLEA9, OsLEA5, LEA5,OsBCH2, BCH2, OsHYD1, HYD1,SNAC1, snac1, OsNAC9, ONAC002, ONAC2, ONAC033, ONAC33, ONAC043, ONAC43, ONAC044, ONAC44, OsNAC19, NAC19, SNAC1/ONAC002, OsSNAC1, OsNAC9, OsNAC1,OsWRKY5 ,,OsWRKY14,,OsbHLH158. bHLH158,OsAP2-39, AP2-39, OsERF#077, OsERF077, OsERF77, AP2/EREBP#149, AP2/EREBP149, DLN121, OsDLN121,OsaTRZ2, OsTRZ2,OsGATL6, OsGT8, GT8,,,OsNAC1, ONAC027, ONAC27, NAC27, OMTN1, OsNAC1/ONAC027, DLN60, OsDLN60, OsORE1,OsIRO2, OsbHLH056, bHLH056, bHLH56, OsbHLH56,SOD, OsSOD-Cu/Zn, SOD-Cu/Zn, OsaCCS, OsCCS, CCS,ILI5, OsILI5, PGL2, OsPGL2, Os170, OsBUL1, BUL1, ILI5/PGL2, OsbHLH170, bHLH170,OsWRKY90,OsMPK7, OsMAPK44, MAPK44, OsMAPK20-5, MAPK20-5,,OsOXS3,OsMKK5, BUD1, OsBUD1,OsRAI1, OsbHLH003, bHLH003, bHLH3
45998	30373760	Yang M., Lu K., Zhao F.J., Xie W., Ramakrishna P., Wang G., Du Q., Liang L., Sun C., Zhao H., Zhang Z., Liu Z., Tian J., Huang X.Y., Wang W., Dong H., Hu J., Ming L., Xing Y., Wang G., Xiao J., Salt D.E., Lian X.	Genome-Wide Association Studies Reveal the Genetic Basis of Ionomic Variation in Rice.	Plant Cell	30(11)	2720-2740	2018	SKC1,SULTR5;2,GHD7	OsHKT8, HKT8, Os-HKT1;5, OsHKT1;5, HKT1;5, SKC1, qSKC-1(t), OsSKC1,OsSultr5;2, OsSul5;2, Os-MOT1;1, OsMOT1;1, MOT1;1, qGMo8, MOT1,Ghd2, Ghd7, OsGhd7, OsCCT26, OsCMF8, OsI, Ghd7/Hd4, Hd4, EH7-1/Hd4, Ghd7-0a, EH7-1, EH7/Ghd7, EH7, OsEH7, GLW7.1, OsGLW7.1
45999	30388677	Hsu Y.T., Lee T.M.	Abscisic acid-dependent nitric oxide pathway and abscisic acid-independent nitric oxide routes differently modulate NaCl stress induction of the gene expression of methionine sulfoxide reductase A and B in rice roots.	J. Plant Physiol.	231	374-382	2018		
46000	30332988	Sun Y., Luo W., Jain A., Liu L., Ai H., Liu X., Feng B., Zhang L., Zhang Z., Guohua X., Sun S.	OsPHR3 affects the traits governing nitrogen homeostasis in rice.	BMC Plant Biol.	18(1)	241	2018	_,NRT2.4,AMT1;1,PHR3,NRT1,AMT1;2,AMT1;3	OsNIA1, OsNia1, NIA1, Nia1, OsNR, NR, OsNR2, NR2, NIA2,OsNRT2.4,OsAMT1;1, OsAMT1:1, OsAMT1, AMT1-1, AMT1, OsAMT1p, OsAMT1-1, Osamt1-1, "OsAMT1,1", OsAMT1.1, AMT1.1, FCO12,OsPHR3, Os-PHR3, OsPHL1, PHL1 ,OsNRT1, OsNRT1;1, OsNRT1.1, OsNRT1.1a, OsNRT1.1b, NRT1.1, NRT1.1a, NRT1.1b, OsNPF8.9, NPF8.9 , OsNRT1.1B,OsAMT1;2, AMT1-2, Osamt1-3, "OsAMT1,3", OsAMT1;3, OsAMT1.3, OsAMT1.2, AMT1.2,OsAMT1;3, AMT1-3, Osamt1-2, "OsAMT1,2", OsAMT1;2, OsAMT1.3, AMT1.2
46001	30367631	Liu Q., Li X., Yan S., Yu T., Yang J., Dong J., Zhang S., Zhao J., Yang T., Mao X., Zhu X., Liu B.	OsWRKY67 positively regulates blast and bacteria blight resistance by direct activation of PR genes in rice.	BMC Plant Biol.	18(1)	257	2018	PR1A,NH1,PAL1,ICS1,PAD4,PR4,WRKY74,PRX65,PRX11,CHT8,CHT4,PR4C,WRKY7,WRKY67,CHT5,_,PR10A,WRKY60	OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1, OsPR1b, PR1alpha, OsPR1alpha,OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2, DLN5, OsDLN5,  OsBTBA1, BTBA1,OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6,OsICS1, OsICS, ICS,OsPAD4,OsPR4, OsPR4a, PR4a, OsPR-4,OsWRKY74,prx65, OsPRX65,OsPOD, prx11, Osprx11, OsPRX11,Cht8, OsChia2a, Cht2, Rcht2, Chia2a, CHIT14, OsCHIT14, OsPR3,Cht4(t)*(Chi4), Chi4, Cht4, OsChia2b, Chi-4, CHIT2, OsCHIT2, PR3, OsPR3,OsPR4c,OsWRKY7,OsWRKY67,Cht5, OsChia4a, OsChitIVa, Chia4a, ChitIVa, CHIT3, OsCHIT3,prx71, Osprx71,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsWRKY60
46002	30099559	Chen X., Ouyang Y., Fan Y., Qiu B., Zhang G., Zeng F.	The pathway of transmembrane cadmium influx via calcium-permeable channels and its spatial characteristics along rice root.	J. Exp. Bot.	69(21)	5279-5291	2018	IRT1,ANN4,CAX4,NRAMP1,ZIP8,GLR3.4,LCD1	OsIRT1, ZIP10, OsZIP10, OsZIP12, ZIP12,OsANN4, OsANN9, ANN9,CAX2, OsCAX2, OsCAX4, OsSTA47, OsNCX3, NCX3,OsNramp1, OsNRAMP1, OsNramp6,OsZIP8, OsZIP1, ZIP1, OsZIP13, ZIP13,OsGLR3.4, OsGLR6.11, GLR6.11,NRAMP5, OsNRAMP5, OsNramp5, OsLCD1
46003	30124964	Ko M.R., Song M.H., Kim J.K., Baek S.A., You M.K., Lim S.H., Ha S.H.	RNAi-mediated suppression of three carotenoid-cleavage dioxygenase genes, OsCCD1, 4a, and 4b, increases carotenoid content in rice.	J. Exp. Bot.	69(21)	5105-5116	2018	NCED1,CCD1,NCED2	OsNCED1, OsCCD4a, CCD4a,OsCCD1,OsNCED2, OsNced2, OsCCD4b, CCD4b, OsCCD4c, CCD4c
46004	30373162	Wang Y., Zhao H., Qin H., Li Z., Liu H., Wang J., Zhang H., Quan R., Huang R., Zhang Z.	The Synthesis of Ascorbic Acid in Rice Roots Plays an Important Role in the salt tolerance of Rice by Scavenging ROS.	Int J Mol Sci	19(11)		2018	MPG3	OsMPG3, OsVTC1-3, VTC1-3
46005	30053063	Dai Z., Wang J., Yang X., Lu H., Miao X., Shi Z.	Modulation of plant architecture by the miR156f-OsSPL7-OsGH3.8 pathway in rice.	J. Exp. Bot.	69(21)	5117-5130	2018	GH3-8,SPL7,CD,MIR156F,SPL2,GLW7 	OsGH3-8, OsMGH3, OsGH3.8, GH3.8, OsGH3-2,OsSPL7,,miR156f, osmiR156f, OsmiR156f, osa-miR156f, osa-MIR156fosa-miR156f-3p osa-miR156f-5p,OsSPL2,OsSPL13, SPL13, OsGLW7
46006	30425978	Yoeun S., Cho K., Han O.	Structural Evidence for the Substrate Channeling of Rice Allene Oxide Cyclase in Biologically Analogous Nazarov Reaction.	Front Chem	6	500	2018	AOC,AOS2	OsAOC, AOC1, OsAOC1, HB, CPM2, OsAOC4, AOC4,OsAOS2, CYP74A2, OsAOS, OsAOS1
46007	30175516	Deng X., Yuan S., Cao H., Lam S.M., Shui G., Hong Y., Wang X.	Phosphatidylinositol-hydrolyzing phospholipase C4 modulates rice response to salt and drought.	Plant Cell Environ.	42(2)	536-548	2019	PLC4	OsPLC4, OsC2DP41, C2DP41
46008	30373525	Lu Y., Feng Z., Liu X., Bian L., Xie H., Zhang C., Mysore K.S., Liang J.	MiR393 and miR390 synergistically regulate lateral root growth in rice under different conditions.	BMC Plant Biol.	18(1)	261	2018	TIR1,MIR390,MIR393B,ETT1,MIR393,TAS3B1	OsTIR1, OsFbox248, Fbox248, Os_F071, AFB,  OsFBL21, FBL21,OsmiR390, miR390, osa-MIR390osa-miR390, osa-miR390-3p, osa-miR390-5p,OsmiR393b, miR393b, osa-MIR393bosa-miR393b osa-miR393b-3p osa-miR393b-5p,OsARF15, ARF15, OsETT1, ARF3b, OsARF3b, OsARF3-1, ARF3-1, OsARF3, ARF3, DLN154, OsDLN154,OsmiR393, osa-MIR393, osa-MIR393a, OsmiR393a, miR393a ,TAS3b1, OsTAS3b1, OsTAS3a, TAS3a, OsTAS3b, TAS3b
46009	30307043	Mehra P., Pandey B.K., Verma L., Giri J.	A novel glycerophosphodiester phosphodiesterase improves phosphate deficiency tolerance in rice.	Plant Cell Environ.	42(4)	1167-1179	2019	GDPD2,PHR2	OsGDPD2,OsPHR2, Os-PHR2
46010	30332817	Park H.L., Kim T.L., Bhoo S.H., Lee T.H., Lee S.W., Cho M.H.	Biochemical Characterization of the Rice Cinnamyl Alcohol Dehydrogenase Gene Family.	Molecules	23(10)		2018	CAD8D,CAD4,FC1,CAD9,GH2,CAD8B,CAD8A,CAD8C,CAD1,CAD3,CAD5,CAD6	OsCAD8D,OsCAD4,OsCAD7, fc1, CAD7,OsCAD9,gh2, CAD2, CAD, OsCAD2, OsGH2 ,OsCAD8B,OsCAD8A,OsCAD8C, CAD8c,OsCAD1,OsCAD3,OsCAD5,OsCAD6
46011	30181146	Prakash Sanyal R., Samant A., Prashar V., Sharan Misra H., Saini A.	Biochemical and functional characterization of OsCSD3, a novel CuZn superoxide dismutase from rice.	Biochem. J.	475(19)	3105-3121	2018		
46012	30356087	Ramanathan V., Rahman H., Subramanian S., Nallathambi J., Kaliyaperumal A., Manickam S., Ranganathan C., Muthurajan R.	OsARD4 encoding an acireductone dioxygenase improves root architecture in rice by promoting development of secondary roots.	Sci Rep	8(1)	15713	2018	JIOSPR10,ARD4,PI55-1,_	JIOsPR10, OsPR10, PR10, OsJiPR10, JiPR10, OsPR10c, PR10c,OsARD4,pi55-1, pi55(t), OsIRL4,OsRab6A1, Rab6A1
46013	30405666	Xu P., Ali A., Han B., Wu X.	Current Advances in Molecular Basis and Mechanisms Regulating Leaf Morphology in Rice.	Front Plant Sci	9	1528	2018	COW1,EBS,_,RL14,RL9,OFP2,ZHD2,RST1,SLL2,ACL2,RLCK216,FIB,SRL2,VYL,NAL1,JAR1,SRL1,GIF3,YAB1,PLA1,GA2OX6,NAL2,DCL1,BAK1,HB4,ACL1,SD37,GW7,MIR319B,PIN1B,D1,ARF7A,MIR319A,SHL4,EXPA8,NAL3,CEF1,CFL1,REL2,OUL1,HDAC1,LC2,GO,GID2,REL1,NRFG2,ADL1,RFS,PLA2,ACL-D	OsCOW1, oscow1, OsYUC8, YUC8, NAL7, OsNAL7, OsYUCCA8, YUCCA8, FMO, OsFMO(t), REIN7, YUC8/REIN7,OsEBS,OsGASR1, GASR1,2-ODD24, Os2-ODD24, 2ODD24, Os2ODD24, OsRL14,rl9, SLL1/RL9, SLL1, OsSLL1, OsADD1, ADD1, KANADI1, AH2, OsAH2, CL1, OsCL1,OsOFP2, OsOFP03,OsZHD2,OsARF10, ARF10, OsARF18, ARF18, OsRST1, GLR1, OsGLR1,OsSLL2,OsACL2,OsRLCK216, OsRRK1, RRK1,fib, OsFIB, OsTAR2, TAR2, TSG1, OsTSG1, OsTAA1, TAA1,NRL2, OsSRL2, OsNRL2,OsClpP6, ClpP6, CLP6, NAL9, NAL9/VYL,nal1, cul1, GPS, SPIKE, SPIKE/LSCHL4/NAL1/GPS, SPIKE/NAL1, LSCHL4, OsNAL1,OsJAR1, OsGH3.5, GH3.5, OsGH3-5, GH3-5,OsSRL1, CLD1/SRL1, CLD1, OsCLD1, OsSPARK9, SPARK9,OsGIF3, OsGIF1, GIF1, MKB3,OsYAB1, FIL1, osFIL1,pla1, OsPLA1, plt1, CYP78A11,OsGA2ox6,nal2, nal3, cul2, OsWOX3A, WOX3A, Os NS, NS, OsNS, OsWOX3, OsNS1/OsNS2, OsPRS,Dcl1, OsDCL1, osDCL1, Os-DCL1, OsDCL1a, DCL1a,OsI-BAK1, I-BAK1, OsBAK1,OSHB4, OsHox32, HOX32, OsHB4, Oshox32, PHB3, OsHDZ13, OsHDZIP13, HDZ13, HDZIP13,OsACL1, ACL2, OsACL2,OsCYP96B4, CYP96B4, CYP96B4/SD37, OsDSS1, DSS1, CFL2, OsCFL2, CFL2/OsCYP96B4, BSHT1, OsBSHT1, BSHT1/OsCYP96B4, DDT1, OsDDT1,GL7, OsGL7, OsGW7, qGW7, qGL7, SLG7, GL7/GW7/SLG7, qPY7, GL7/SLG7, Chalk7, OsChalk7,OsmiR319b, Osa-miR319b,PIN1A, OsPIN1A, OsPIN1a, REH1, OsPIN1, OsPIN1b, REH1/OsPIN1,d1, GPA1, GA1, OsGA1, RGA1, dwf1, XA7, RGA, D1/RGA1, D89, TGW5, OsTGW5, SRG5, OsSRG5,OsARF7a, OsARF19, ARF19, OsARF7,OsmiR319a, Osa-miR319a, osa-MIR319aosa-miR319a osa-miR319a-3p osa-miR319a-3p.2-3p,shl4, sh4, OsAGO7, SHO2, AGO7, SHL4/SHO2,OsEXPA8, OsEXP8, osaEXPa1.17,nal3(nal2), nal2, nal3, cul3, OsWOX3A, WOX3A, WOX3, OsWOX3, OsNS, OsNS1/OsNS2, OsPRS,OsMYB103, OsMYB103L, CEF1/OsMYB103L, MYB103, MYB103L, OsMYB93, MYB93, OsFC9, FC9, Os2R_MYB74, 2R_MYB74,OsCFL1,OsREL2, OsDLT10, DLT10, RSD1, OsRSD1, RSD1/REL2,ROC5, Roc5(t), Roc5, GL2-5, OsROC5, CLF1, OsCLF1, OsOUL1, OsHDZ7, OsHDZIP7, HDZ7, HDZIP7,OsHDAC1, HDA702, OsHDA702, HDA1, OsHDA1, HDT702, OsHDT702,OsLC2, OsVIL2, VIL2, OsVIL3,go, go1, pla3, PLA3, PLA3/GO, OsLBD3-7, LBD3-7,gid2, GF14e, OsGF14e, OsGID2, 14-3-3e,OsREL1,PFL, OsNRFG2,OsADL1,rfs, cul7, OsRFS, OsCHR729, CHR729, CHR4, OsCHR4, CRL6, OsCRL, OsCHR4/CHR729, PKR1, OsPHD32, PHD32,pla2, pla2(pla2-1, pla2-2), plt2, LHD2, OsLHD2,OsZHD1, ZHD1, OsACL-D, ZHD_G6, OsZHD_G6
46014	30183128	Zhao Y.F., Peng T., Sun H.Z., Teotia S., Wen H.L., Du Y.X., Zhang J., Li J.Z., Tang G.L., Xue H.W., Zhao Q.Z.	miR1432-OsACOT (Acyl-CoA thioesterase) module determines grain yield via enhancing grain filling rate in rice.	Plant Biotechnol. J.	17(4)	712-723	2019	PIN9,ACOT ,MIR1432,ABA4,LRA1,BT1-1,SSIIC,ARF14,PYL/RCAR4,TARL1	OsPIN9,OsACOT ,miR1432, osa-miR1432, osa-miR1432-5p, osa-MIR1432,OsMHZ4, MHZ4, MHZ4/OsABA4, OsABA4,OsPIN2, PIN2, OsLRA1, WAR1, OsWAR1,OsBT1-1, OsEnS-29, OsBT1, OsBt1, BT1, Bt1, OsBt1-1, shr3, OsBT1-2, BT1-2,OsSSIIc, SSII-1, SSII1 ,OsARF14, OsETT4, ETT4, DLN153, OsDLN153, OsARF3la, ARF3la,OsPYL/RCAR4, PYL4, OsPYL4, OsPYL6, PYL6,OsTAA1, TAA1, OsTAA1;4, TAA1;4, OsTARL1, OsTAA1;3, TAA1;3
46015	30303953	Xu N., Chu Y., Chen H., Li X., Wu Q., Jin L., Wang G., Huang J.	Rice transcription factor OsMADS25 modulates root growth and confers salinity tolerance via the ABA-mediated regulatory pathway and ROS scavenging.	PLoS Genet.	14(10)	e1007662	2018	TRAB1,LEA3-1,GSTF11,ABI5,BZIP23,P5CS,BZIP46,P5CR,YUCCA4,MADS25	OsbZIP66, OsABF5, Osbzip66, OsTRAB1, bZIP66, ABF5,OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3, OsLEA3A, LEA3A,OsGSTF11, OsGST4,OsABI5, OsbZIP10, OsABF1, OREB1, OsABI5-1, OsABI5-2, OsOREB1, OREB1 ,OsbZIP23, OsAREB1, OsABF2, Osbzip23, OsAREB2, OsZIP23, ZIP23,OsP5CS, P5CS1, OsP5CS1, OsALDH18B1, ALDH18B1, OsP5CS-1, P5CS-1,ABL1, bZIP46, OsABL1, OsbZIP46, OsAREB8, OsABF2, ABF2, OsABF3, ABF3, OsbZIP46CA1, OsZIP46, ZIP46, OsbZIP46/OsABF2,OsP5CR,OsYUCCA4, OsYUC4, YUC4, YUCCA6, OsYUCCA6,OsMADS25
46016	29982633	James M., Poret M., Masclaux-Daubresse C., Marmagne A., Coquet L., Jouenne T., Chan P., Trouverie J., Etienne P.	SAG12, a Major Cysteine Protease Involved in Nitrogen Allocation during Senescence for Seed Production in Arabidopsis thaliana.	Plant Cell Physiol.	59(10)	2052-2063	2018		
46017	29939322	Zhang C., Lu W., Yang Y., Shen Z., Ma J.F., Zheng L.	OsYSL16 is Required for Preferential Cu Distribution to Floral Organs in Rice.	Plant Cell Physiol.	59(10)	2039-2051	2018	YSL16	OsYSL16, Os-YSL16, OsYs14 
46018	29767552	Yuan P., Zhang C., Wang Z.Y., Zhu X.F., Xuan Y.H.	RAVL1 Activates Brassinosteroids and Ethylene Signaling to Modulate Response to Sheath Blight Disease in Rice.	Phytopathology	108(9)	1104-1113	2018	ACO2,ERS1,ERF50,D2,D61,EIL1A,RAVL1,_,_	OsACO2, OsACO1,OS-ERS1, OsERS1, OsERS1a, OsERS1b, OSERS,OsERF#050, OsERF050, OsERF50, AP2/EREBP#113, AP2/EREBP113, OsDREB6, OsERF60, ERF60,d2, dwf2, CYP90D2, D2/CYP90D2, OsD2, SMG11, OsSMG11, D2/SMG11, OsD2a, OsD2b,d61*, dwf42, d61, OsBRI1, OSBRI1, BRI1, Os BRI1, Osbri1, OsBRKq1, BRKq1,EIL1, OsEIL1, EIL1a, OsEIL1a, MHZ6/OsEIL1, MHZ6, OsMHZ6,RAVL, OsRAVL1, OsNGA3, NGA3,OsEIN2.3, EIN2.3,OsEIN2.4, EIN2.4
46019	30105259	Oladosu Y., Rafii M.Y., Magaji U., Abdullah N., Miah G., Chukwu S.C., Hussin G., Ramli A., Kareem I.	Genotypic and Phenotypic Relationship among Yield Components in Rice under Tropical Conditions.	Biomed Res Int	2018	8936767	2018		
46020	30061119	Cheng X., Zhang S., Tao W., Zhang X., Liu J., Sun J., Zhang H., Pu L., Huang R., Chen T.	INDETERMINATE SPIKELET1 Recruits Histone Deacetylase and a Transcriptional Repression Complex to Regulate Rice salt tolerance.	Plant Physiol.	178(2)	824-837	2018	ERF3,ZFP179,WD40-66,IDS1,LEA17,SAP18,SOS1,HDAC1	AP37, OsAP37, OsERF3, OsERF#075, OsERF075, OsERF75, ERF75, AP2/EREBP#004, AP2/EREBP4, OsBIERF2, BIERF2, DLN23, OsDLN23,OsZFP179, DLN27, OsDLN27,OsWD40-66, TPR3, OsTPR3, TPR1, OsTRP1, OsTPR3, OsTPL2, TPL2, OsTPL, TPL,OsIDS1, AP2/EREBP#033, AP2/EREBP33, AP2-33/IDS1, AP2-33, AP2-2, DLN104, OsDLN104,OsLEA17, OsLEA3-2, LEA3-2, LEA1,OsSAP18,OsSOS1, OsNHA1, NHA1, SOS1/NHX7, NHX7, OsNHX7,OsHDAC1, HDA702, OsHDA702, HDA1, OsHDA1, HDT702, OsHDT702
46021	30006850	Divya D., Madhavi K.R., Dass M.A., Maku R.V., Mallikarjuna G., Sundaram R.M., Laha G.S., Padmakumari A.P., Patel H.K., Prasad M.S., Sonti R.V., Bentur J.S.	Expression Profile of Defense Genes in Rice Lines Pyramided with Resistance Genes Against Bacterial Blight, Fungal Blast and Insect Gall Midge.	Rice (N Y)	11(1)	40	2018		
46022	29932274	Zhang G., Xu N., Chen H., Wang G., Huang J.	OsMADS25 regulates root system development via auxin signalling in rice.	Plant J.	95(6)	1004-1022	2018		
46023	30018605	Trovero M.F., Scavone P., Platero R., de Souza EM., Fabiano E., Rosconi F.	<i>Herbaspirillum seropedicae</i> Differentially Expressed Genes in Response to Iron Availability.	Front Microbiol	9	1430	2018		
46024	29983312	Cubry P., Tranchant-Dubreuil C., Thuillet A.C., Monat C., Ndjiondjop M.N., Labadie K., Cruaud C., Engelen S., Scarcelli N., Rhon? B., Burgarella C., Dupuy C., Larmande P., Wincker P., Fran?ois O., Sabot F., Vigouroux Y.	The Rise and Fall of African Rice Cultivation Revealed by Analysis of 246 New Genomes.	Curr. Biol.	28(14)	2274-2282.e6	2018		
46025	30065743	Xu Y., Liu F., Zhu S., Li X.	The Maize NBS-LRR gene <i>ZmNBS25</i> Enhances disease resistance in Rice and Arabidopsis.	Front Plant Sci	9	1033	2018		
46026	30061546	Li W., Qiang X.J., Han X.R., Jiang L.L., Zhang S.H., Han J., He R., Cheng X.G.	Ectopic Expression of a Thellungiella salsuginea Aquaporin Gene, TsPIP1;1, Increased the salt tolerance of Rice.	Int J Mol Sci	19(8)		2018		
46027	29995230	Qiu Z., Chen D., He L., Zhang S., Yang Z., Zhang Y., Wang Z., Ren D., Qian Q., Guo L., Zhu L.	The rice white green leaf 2 gene causes defects in chloroplast development and affects the plastid ribosomal protein S9.	Rice (N Y)	11(1)	39	2018	YGL10,RPS18,_,_,PSBA,DVR,PSAA,FGL,_,RPOC1,WGL2,CHLH,RPL21,RPOB,RPOC2,RBCL	CAO, OsCAO, CAO1, OsCAO1, Oslls1, Lls1, DVR, PGL,rps18,RPS10, OsRPS10, rps10,RPS16, OsRPS16, rps16,PsbA, psbA, OsPsbA, PSBD1, OsPSBD1, psbD1,OsDVR,PsaA, psaA, PsAA1, psaA1,fgl(fl), fl, fgl, OsFGL, OsPorB, PoPA, PORA, porA, OsPORA, PORB, OsPORB,RPS20, OsRPS20, rps20,rpoC1, RPO beta', RPObeta', OsRPOC1,rps9, OsRPS9, OsWGL2,OsChlH, ChlH, OsCHLH,OsRPL21, Rpl21, OsRpl21,rpoB, RpoB, Rpobeta,rpoC2, RPO beta", RPObeta",rbcL, rbcA, OsrbcL
46028	30014258	Ngangkham U., Nath M., Dokku P., Amitha Mithra SV., Ramamurthy S., Singh N.K., Sharma R.P., Mohapatra T.	An EMS-induced new sequence variant, TEMS5032, in the coding region of SRS3 gene leads to shorter grain length in rice (Oryza sativa L.).	J. Appl. Genet.	59(4)	377-389	2018		
46029	29658844	Chen X., Jia Y., Jia M.H., Pinson S.R.M., Wang X., Wu B.M.	Functional Interactions Between Major Rice Blast Resistance Genes, Pi-ta and Pi-b, and Minor Blast Resistance Quantitative Trait Loci.	Phytopathology	108(9)	1095-1103	2018		
46030	30021179	Fu L., Shen Q., Kuang L., Yu J., Wu D., Zhang G.	Metabolite profiling and gene expression of Na/K transporter analyses reveal mechanisms of the difference in salt tolerance between barley and rice.	Plant Physiol. Biochem.	130	248-257	2018		
46031	30051480	Li X., Yang W., Liu S., Li X.Q., Jia J., Zhao P., Cheng L., Qi D., Chen S., Liu G.	LcFIN2, a novel chloroplast protein gene from sheepgrass, enhances tolerance to low temperature in Arabidopsis and rice.	Physiol Plant			2018		
46032	30005603	Shin S.Y., Jeong J.S., Lim J.Y., Kim T., Park J.H., Kim J.K., Shin C.	Transcriptomic analyses of rice (Oryza sativa) genes and non-coding RNAs under nitrogen starvation using multiple omics technologies.	BMC Genomics	19(1)	532	2018		
46033	30066266	Majumder B., Das S., Mukhopadhyay S., Biswas A.K.	Identification of arsenic-tolerant and arsenic-sensitive rice (Oryza sativa L.) cultivars on the basis of arsenic accumulation assisted stress perception, morpho-biochemical responses, and alteration in genomic template stability.	Protoplasma	256(1)	193-211	2019		
46034	29967431	Petchthai U., Yee C.S.L., Wong S.M.	Resistance to CymMV and ORSV in artificial microRNA transgenic Nicotiana benthamiana plants.	Sci Rep	8(1)	9958	2018		
46035	29990722	Kelly B.C., Myo A.N., Pi N., Bayen S., Leakhena P.C., Chou M., Tan B.H.	Human exposure to trace elements in central Cambodia: Influence of seasonal hydrology and food-chain bioaccumulation behaviour.	Ecotoxicol. Environ. Saf.	162	112-120	2018		
46036	30014294	Sabouri A., Afshari R., Raiesi T., Babaei Raouf H., Nasiri E., Esfahani M., Kafi Ghasemi A., Kumar A.	Superior adaptation of aerobic rice under drought stress in Iran and validation test of linked SSR markers to major QTLs by MLM analysis across two?years.	Mol. Biol. Rep.	45(5)	1037-1053	2018		
46037	30066217	Basak P., Sangma S., Mukherjee A., Agarwal T., Sengupta S., Ray S., Majumder A.L.	Functional characterization of two myo-inositol-1-phosphate synthase (MIPS) gene promoters from the halophytic wild rice (Porteresia coarctata).	Planta	248(5)	1121-1141	2018		
46038	30028850	Shao J., Haider I., Xiong L., Zhu X., Hussain R.M.F., ?vern?s E., Meijer A.H., Zhang G., Wang M., Bouwmeester H.J., Ouwerkerk P.B.F.	Functional analysis of the HD-Zip transcription factor genes Oshox12 and Oshox14 in rice.	PLoS ONE	13(7)	e0199248	2018		
46039	29660235	Gao Y., Zhang C., Han X., Wang Z.Y., Ma L., Yuan P., Wu J.N., Zhu X.F., Liu J.M., Li D.P., Hu Y.B., Xuan Y.H.	Inhibition of OsSWEET11 function in mesophyll cells improves resistance of rice to sheath blight disease.	Mol. Plant Pathol.	19(9)	2149-2161	2018		
46040	29982569	Dong W., Vannozzi A., Chen F., Hu Y., Chen Z., Zhang L.	MORC domain Definition and Evolutionary Analysis of the MORC gene Family in Green Plants.	Genome Biol Evol	10(7)	1730-1744	2018	MORC7,MORC6A,MORC1,MORC6B,MORC6C,MORC4	OsMORC7,OsMORC6a,OsMORC1,OsMORC6b,OsMORC6c, MORC6, OsMORC6,OsMORC4
46041	30128334	Meng Q., Gupta R., Min C.W., Kim S.T.	Label-free quantitative proteome data associated with MSP1 and flg22 induced signaling in rice leaves.	Data Brief	20	204-209	2018		
46042	29974251	Reinke R., Kim S.M., Kim B.K.	Developing japonica rice introgression lines with multiple resistance genes for brown planthopper, bacterial blight, rice blast, and rice stripe virus using molecular breeding.	Mol. Genet. Genomics	293(6)	1565-1575	2018	XA3,PIK,BPH9,XA40,PIB	Xa-3, Xa3 (Xa4b, Xa6, Xa9, Xa w), Xa3, Xaw, Xa6, Xa9, Xa4-b, XA26, Xa26(t), Xa26(t)*, Xa26, RKb, MRKb, MRKB, TRKb, Xa3/Xa26,Pik, RMg8, Pi-k, Pik-2, Pik-1, Pik1, Pik2, Pik-H4, Pikp-1, Pikh-1, Pik1-H4, Pikh-2, Pik2-H4,Bph9, BPH9/26, Bph26(t), BPH26, Bph18(t), BPH18,,Pi b(Pi s), Pis, Pib, Pi-s, Pi-hy
46043	29946804	Liu C., Mao B., Ou S., Wang W., Liu L., Wu Y., Chu C., Wang X.	Correction to: OsbZIP71, a bZIP transcription factor, confers salinity and drought tolerance in rice.	Plant Mol. Biol.	97(4-5)	467-468	2018		
46044	30055793	Lee M.H., Ok Y.S., Hur J.	Dynamic variations in dissolved organic matter and the precursors of disinfection by-products leached from biochars: Leaching experiments simulating intermittent rain events.	Environ. Pollut.	242(Pt B)	1912-1920	2018		
46045	30035649	Colzani M., Regazzoni L., Criscuolo A., Baron G., Carini M., Vistoli G., Lee Y.M., Han S.I., Aldini G., Yeum K.J.	Isotopic labelling for the characterisation of HNE-sequestering agents in plant-based extracts and its application for the identification of anthocyanidins in black rice with giant embryo.	Free Radic. Res.	52(8)	896-906	2018		
46046	30072222	Zhao J.Y., Ye Z.H., Zhong H.	Rice root exudates affect microbial methylmercury production in paddy soils.	Environ. Pollut.	242(Pt B)	1921-1929	2018		
46047	29962168	Hu X.F., Tian Z.Q., Liang L., Chen J.D., Zhang Z.M., Zhu X.M., Wang S.K.	[Comparative Analysis of Different Soil Amendment Treatments on Rice Heavy Metal Accumulation and Yield Effect in Pb and Cd Contaminated Farmland].	Huan Jing Ke Xue	39(7)	3409-3417	2018		
46048	29985462	Khan E., Gupta M.	Arsenic-silicon priming of rice (Oryza sativa L.) seeds influence mineral nutrient uptake and biochemical responses through modulation of Lsi-1, Lsi-2, Lsi-6 and nutrient transporter genes.	Sci Rep	8(1)	10301	2018		
46049	30108604	Li G., Hu Q., Shi Y., Cui K., Nie L., Huang J., Peng S.	Low Nitrogen Application Enhances Starch-Metabolizing Enzyme Activity and Improves Accumulation and Translocation of Non-structural Carbohydrates in Rice Stems.	Front Plant Sci	9	1128	2018		
46050	30079077	Priyadarshi R., Arremsetty H.P.S., Singh A.K., Khandekar D., Ulaganathan K., Shenoy V., Sinha P., Singh V.K.	Marker-Assisted Improvement of the Elite Maintainer Line of Rice, IR 58025B for Wide Compatibility (<i>S5</i>          <i>n</i>         ) Gene.	Front Plant Sci	9	1051	2018		
46051	30031604	Sengupta S., Rajasekaran K., Baisakh N.	Natural and targeted isovariants of the rice actin depolymerizing factor 2 can alter its functional and regulatory binding properties.	Biochem. Biophys. Res. Commun.	503(3)	1516-1523	2018		
46052	30042770	Ponce K.S., Ye G., Zhao X.	QTL Identification for Cooking and Eating Quality in <i>indica</i> Rice Using Multi-Parent Advanced Generation Intercross (MAGIC) Population.	Front Plant Sci	9	868	2018		
46053	29987304	Cao C., Zhou Z.L., Cao L.D., Zheng L., Xu J., Li F.M., Huang Q.L.	Influence of the surface limiting elasticity modulus on the impact behavior of droplets of difenoconazole-loaded mesoporous silica nanoparticles with associated SDS.	Soft Matter	14(29)	6070-6075	2018		
46054	30087689	Xiong Q., Tang G., Zhong L., He H., Chen X.	Response to Nitrogen Deficiency and Compensation on Physiological Characteristics, Yield Formation, and Nitrogen Utilization of Rice.	Front Plant Sci	9	1075	2018		
46055	30002723	Wong H.L., Akamatsu A., Wang Q., Higuchi M., Matsuda T., Okuda J., Kosami K.I., Inada N., Kawasaki T., Kaneko-Kawano T., Nagawa S., Tan L., Kawano Y., Shimamoto K.	In vivo monitoring of plant small GTPase activation using a F?rster resonance energy transfer biosensor.	Plant Methods	14	56	2018		
46056	29988155	De la Concepcion JC., Franceschetti M., Maqbool A., Saitoh H., Terauchi R., Kamoun S., Banfield M.J.	Polymorphic residues in rice NLRs expand binding and response to effectors of the blast pathogen.	Nat Plants	4(8)	576-585	2018		
46057	30009574	Gao J., Chen H., Yang H., He Y., Tian Z., Li J.	A brassinosteroid responsive miRNA-target module regulates gibberellin biosynthesis and plant development.	New Phytol.	220(2)	488-501	2018	GAMYBL2	OsGAMYBL2, Os2R_MYB40, 2R_MYB40
46058	29966651	Wang Y., Wei Z., Xing S.	Stable plastid transformation of rice, a monocot cereal crop.	Biochem. Biophys. Res. Commun.	503(4)	2376-2379	2018		
46059	30363818	Yu H., Shahid M.Q., Li R., Li W., Liu W., Ghouri F., Liu X.	Genome-Wide Analysis of Genetic Variations and the Detection of Rich Variants of NBS-LRR Encoding Genes in Common Wild Rice Lines.	Plant Molecular Biology Reporter	36(4)	618-630	2018	PI36,NLS1,PITA,RGA5,PIZT,PI56,CC1,PIA,XA1,_,PISH,BPH9,RPM1 ,PID3,BPH14	Pi36(t), Pi36,OsNLS1,Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30, Trx30,Os11gRGA5, OsRGA5, RGA5-A, RGA5-B, Pi5, Pias-2,Piz-t, Pi-zt, Pi-z(t), Pi2/Pizt, Pizt, Pi9, OsPiz-t,Pi56, qBR9.1, Pi56(t),OsCc1, OsCc-1,Pi a, Pia, Pi-a, Pia-1, Pia-2,Xa1(Xe), Xe, Xa1, Xa-1,OsRP1L1, RP1L1, OsBBR1, BBR1, rNBS33,Pi sh, Pish, Pi-sh, Pish(t),Bph9, BPH9/26, Bph26(t), BPH26, Bph18(t), BPH18,OsRPM1,Pi-d3, Pid3, Pi25, Pid3-I1, qBRM6.2,Bph14 (Qbp1), Bph14, Qbp1, qBPH-3
46060	30740564	Qi J., Malook S.U., Shen G., Gao L., Zhang C., Li J., Zhang J., Wang L., Wu J.	Current understanding of maize and rice defense against insect herbivores.	Plant Divers	40(4)	189-195	2018		
46061	30073007	Wang L., Xue C., Pan X., Chen F., Liu Y.	Application of Controlled-Release Urea Enhances grain yield and Nitrogen Use Efficiency in Irrigated Rice in the Yangtze River Basin, China.	Front Plant Sci	9	999	2018		
46062	30031320	Thongnok S., Siripornadulsil W., Siripornadulsil S.	Mitigation of arsenic toxicity and accumulation in hydroponically grown rice seedlings by co-inoculation with arsenite-oxidizing and cadmium-tolerant bacteria.	Ecotoxicol. Environ. Saf.	162	591-602	2018		
46063	29871980	Ramireddy E., Hosseini S.A., Eggert K., Gillandt S., Gnad H., von Wir?n N., Schm?lling T.	Root Engineering in Barley: Increasing Cytokinin Degradation Produces a Larger root system, Mineral Enrichment in the Shoot and Improved drought tolerance.	Plant Physiol.	177(3)	1078-1095	2018		
46064	30021883	Liu S., Xue C., Fang Y., Chen G., Peng X., Zhou Y., Chen C., Liu G., Gu M., Wang K., Zhang W., Wu Y., Gong Z.	Global Involvement of Lysine Crotonylation in Protein Modification and Transcription Regulation in Rice.	Mol. Cell Proteomics	17(10)	1922-1936	2018	PSAL,DYE1,PSAK,PSBS1,CP24,LHCA1,PETB,CP29,PETD,PSAE,LHCA3,PSAD,PSBB,PSAC,PSBP,PSBC,PSBR3,PSBQ,PSB27,PSAB,PETA,PSAN,PSAG,PSAA	PsaL, OsPSAL,cab, cab-n8, Lhca4, OsLhca4,PsaK, OsPSAK,OsPsbS1, PsbS1, psbS, OsPSBS,Lhcb6, OsCP24, OsLhcb6,OsLhca1, Lhca1,petB, OsPETB,OsCP29, LHCB4, Lhcb4, OsLHCB4,petD, OsPETD,PsaE, OsPsaE,OsLhca3, Lhca3,PsaD, OsPsaD,psbB, OsPSBB,psaC, OsPSAC,PsbP, OsPsbP, psbP,psbC, cp43, OsPSBC, OsCP43,OsPsbR3, PsbR3,PsbQ, OsPsbQ, psbQ, PsbQ-1,Psb27, OsPSB27, Psb27-H1,PsaB, psaB, PsAA2, psaA2,petA, Cytf, cytF, Cyt f, OsPETA,psaN, OspsaN, PN, OsPN,PsaG, OsPSAG,PsaA, psaA, PsAA1, psaA1
46065	29928789	Huang C., Xia T., Niu J., Yang Y., Lin S., Wang X., Yang G., Mao L., Xing B.	Transformation of 14 C-Labeled Graphene to 14 CO2 in the Shoots of a Rice Plant.	Angew. Chem. Int. Ed. Engl.	57(31)	9759-9763	2018		
46066	30064038	Mithoe S.C., Menke F.L.	Regulation of pattern recognition receptor signalling by phosphorylation and ubiquitination.	Curr. Opin. Plant Biol.	45(Pt A)	162-170	2018		
46067	30034405	Zheng H., Cheng T., Li D., Yao X., Tian Y., Cao W., Zhu Y.	Combining Unmanned Aerial Vehicle (UAV)-Based Multispectral Imagery and Ground-Based Hyperspectral Data for Plant Nitrogen Concentration Estimation in Rice.	Front Plant Sci	9	936	2018		
46068	30018302	Huang M., Zhao C., Zou Y., Uphoff N.	Yield effect of applying earthworm castings produced during the oilseed rape-growing season in rice-oilseed rape cropping fields to rice.	Sci Rep	8(1)	10759	2018		
46069	30032316	Hechanova S.L., Prusty M.R., Kim S.R., Ballesfin L., Ramos J., Prahalada G.D., Jena K.K.	Monosomic alien addition lines (MAALs) of Oryza rhizomatis in Oryza sativa: production, cytology, alien trait introgression, molecular analysis and breeding application.	Theor. Appl. Genet.	131(10)	2197-2211	2018		
46070	30038290	Wang X., Zheng H., Tang Q.	Early harvesting improves seed vigour of hybrid rice seeds.	Sci Rep	8(1)	11092	2018		
46071	30066052	Grondin A., Dixit S., Torres R., Venkateshwarlu C., Rogers E., Mitchell-Olds T., Benfey P.N., Kumar A., Henry A.	Physiological mechanisms contributing to the QTL qDTY3.2 effects on improved performance of rice Moroberekan x Swarna BC2F3:4 lines under drought.	Rice (N Y)	11(1)	43	2018		
46072	29996483	Xue M., Long Y., Zhao Z., Huang G., Huang K., Zhang T., Jiang Y., Yuan Q., Pei X.	Isolation and Characterization of a Green-Tissue Promoter from Common Wild Rice (<i>Oryza rufipogon</i> Griff.).	Int J Mol Sci	19(7)		2018	_,GSE	OrGSE,OsGSE
46073	30026750	Zhou K., Cheng T., Zhu Y., Cao W., Ustin S.L., Zheng H., Yao X., Tian Y.	Assessing the Impact of Spatial Resolution on the Estimation of Leaf Nitrogen Concentration Over the Full Season of Paddy Rice Using Near-Surface Imaging Spectroscopy Data.	Front Plant Sci	9	964	2018		
46074	30028886	Mathew B., L?on J., Sillanp?? MJ.	Impact of residual covariance structures on genomic prediction ability in multi-environment trials.	PLoS ONE	13(7)	e0201181	2018		
46075	30042775	Minhas A.P., Tuli R., Puri S.	Pathway Editing Targets for Thiamine Biofortification in Rice Grains.	Front Plant Sci	9	975	2018		
46076	29973285	Tang X., Liu G., Zhou J., Ren Q., You Q., Tian L., Xin X., Zhong Z., Liu B., Zheng X., Zhang D., Malzahn A., Gong Z., Qi Y., Zhang T., Zhang Y.	A large-scale whole-genome sequencing analysis reveals highly specific genome editing by both Cas9 and Cpf1 (Cas12a) nucleases in rice.	Genome Biol.	19(1)	84	2018		
46077	30032279	Wen Y.J., Zhang Y.W., Zhang J., Feng J.Y., Dunwell J.M., Zhang Y.M.	An efficient multi-locus mixed model framework for the detection of small and linked QTLs in F2.	Brief. Bioinformatics			2018		
46078	29762900	Wang M., Mao Y., Lu Y., Wang Z., Tao X., Zhu J.K.	Multiplex gene editing in rice with simplified CRISPR-Cpf1 and CRISPR-Cas9 systems.	J Integr Plant Biol	60(8)	626-631	2018		
46079	29986421	Zhang Z., Liu M., Liu X., Zhou G.	A New Vegetation Index Based on Multitemporal Sentinel-2 Images for Discriminating Heavy Metal Stress Levels in Rice.	Sensors (Basel)	18(7)		2018		
46080	30055345	Hu L.Y., Li D., Sun K., Cao W., Fu W.Q., Zhang W., Dai C.C.	Mutualistic fungus Phomopsis liquidambari increases root aerenchyma formation through auxin-mediated ethylene accumulation in rice (Oryza sativa L.).	Plant Physiol. Biochem.	130	367-376	2018		
46081	29718322	Proost S., Mutwil M.	CoNekT: an open-source framework for comparative genomic and transcriptomic network analyses.	Nucleic Acids Res.	46(W1)	W133-W140	2018		
46082	30158652	Sun H., Tao J., Bi Y., Hou M., Lou J., Chen X., Zhang X., Luo L., Xie X., Yoneyama K., Zhao Q., Xu G., Zhang Y.	OsPIN1b is Involved in Rice seminal root Elongation by Regulating Root Apical Meristem Activity in Response to Low Nitrogen and Phosphate.	Sci Rep	8(1)	13014	2018		
46083	30158365	Naher K., Miwa H., Okazaki S., Yasuda M.	Effects of Different Sources of Nitrogen on Endophytic Colonization of Rice Plants by Azospirillum sp. B510.	Microbes and Environments	33(3)	301-308	2018		
46084	30348312	Yan J., Liu Y., Wang K., Li D., Hu Q., Zhang W.	Overexpression of OsPIL1 enhanced biomass yield and saccharification efficiency in switchgrass.	Plant Sci.	276	143-151	2018		
46085	30150624	Baicharoen A., Vijayan R., Pongprayoon P.	Structural insights into betaine aldehyde dehydrogenase (BADH2) from Oryza sativa explored by modeling and simulations.	Sci Rep	8(1)	12892	2018		
46086	30080873	Li X., Yu H., Jiao Y., Shahid M.Q., Wu J., Liu X.	Genome-wide analysis of DNA polymorphisms, the methylome and transcriptome revealed that multiple factors are associated with low pollen fertility in autotetraploid rice.	PLoS ONE	13(8)	e0201854	2018		
46087	30148033	Phule A.S., Barbadikar K.M., Madhav M.S., Senguttuvel P., Babu MBBP., Ananda Kumar P.	Genes encoding membrane proteins showed stable expression in rice under aerobic condition: novel set of reference genes for expression studies.	3 Biotech	8(9)	383	2018	AMT1;2,AMT3;1,WRKY55,AMT2;3,AMT2;1,_,_,AMT3;3,PTR2,YUCCA1,MRS2-2,BHLH133,EXPB5,_,DRO1,HTNE,HKT7,AMT1;1,RR2,NRR,IAA13,SPX1,ONAC2,ARF8,CML31,CRL4	OsAMT1;2, AMT1-2, Osamt1-3, "OsAMT1,3", OsAMT1;3, OsAMT1.3, OsAMT1.2, AMT1.2,OsAMT3;1, AMT3-1, OsAMT3.1, OsAMT2;2,OsWRKY55,OsAMT2;3, AMT2;3, OsAMT2.3,OsAMT2;1, AMT2-1, OsAMT2.1, AMT2.1,Memp,OsTCTP, TCTP, OsTCTPa, OsTCTPb, TPH,OsAMT3;3, AMT3;3, OsAMT3.3,OsPTR2, OsNPF2.2, NPF2.2,OsYUCCA1, OsYUC1, YUC1,OsMGT1, OsMRS2-2, MGT1,OsbHLH133, bHLH133, OsRSL8, RSL8,OsEXPB5, osaEXPb1.19,Exp1,Dro1, OsDRO1, OsSPR1, SPR1, DRO1/OsNGR3, OsNGR3, NGR3,NRT2.3, OsNRT2.3, OsNRT2;1, OsNRT2.3a, OsNRT2.3b, OsNRT2;3a, OsNRT2.5 ,OsHKT7, OsHKT1;4, HKT1;4,OsAMT1;1, OsAMT1:1, OsAMT1, AMT1-1, AMT1, OsAMT1p, OsAMT1-1, Osamt1-1, "OsAMT1,1", OsAMT1.1, AMT1.1, FCO12,rr2, Osrr2, OsRR2, Rra10, OsRRA10,OsNRR, NRRa, NRRb, OsCCT18, OsCMF6,  CCT18, CMF6, CRCT, OsCRCT,OsIAA13, OsIAA1, OsiIAA1,OsSPX1,SNAC1, snac1, OsNAC9, ONAC002, ONAC2, ONAC033, ONAC33, ONAC043, ONAC43, ONAC044, ONAC44, OsNAC19, NAC19, SNAC1/ONAC002, OsSNAC1, OsNAC9, OsNAC1,OsARF8, OsARF12, ARF12,OsCML31, OsMSR2, MSR2,OsGNOM1, GNOM1, CRL4/GNOM1, CRL2/CRL3
46088	30369817	Ohmori S., Koike S., Hayashi T., Yamaguchi T., Kuroki M., Yoshida H.	The cleistogamy of the <i>superwoman1-cleistogamy1</i> mutation is sensitive to low temperatures during the lodicule-forming stage.	Breed. Sci.	68(4)	432-441	2018		
46089	30140774	Sirisomboon P., Posom J.	A new creep model for studying the non-linear viscoelastic behavior of cooked white, brown and germinated brown Thai jasmine rice by large deformation testing.	Heliyon	4(8)	e00745	2018		
46090	29566130	Junaid A., Kumar H., Rao A.R., Patil A.N., Singh N.K., Gaikwad K.	Unravelling the epigenomic interactions between parental inbreds resulting in an altered hybrid methylome in pigeonpea.	DNA Res.	25(4)	361-373	2018		
46091	30112588	Tian D., Yang L., Chen Z., Chen Z., Wang F., Zhou Y., Luo Y., Yang L., Chen S.	Proteomic analysis of the defense response to Magnaporthe oryzae in rice harboring the blast resistance gene Piz-t.	Rice (N Y)	11(1)	47	2018		
46092	30171963	Zeng F., Li T., Gao Q., Liu B., Yu S.	Physicochemical properties and in vitro digestibility of high hydrostatic pressure treated Waxy rice starch.	Int. J. Biol. Macromol.	120(Pt A)	1030-1038	2018		
46093	30182596	Cao N., Xiong Q.Q., Chen X.R., He H.H., Zhu C.L., Fu J.R., Cai S., Xu T.	[Effects of different nitrogen application rates on low temperature resistance of late rice at heading and flowering stage.]	Ying Yong Sheng Tai Xue Bao	29(8)	2566-2574	2018		
46094	30149354	Chao X., Qian X., Han-Hua Z., Shuai W., Qi-Hong Z., Dao-You H., Yang-Zhu Z.	Effect of biochar from peanut shell on speciation and availability of lead and zinc in an acidic paddy soil.	Ecotoxicol. Environ. Saf.	164	554-561	2018		
46095	30113309	Diao M., Ren S., Wang Q., Qian L., Shen J., Liu Y., Huang S.	<i>Arabidopsis</i> Formin 2 regulates cell-to-cell trafficking by capping and stabilizing actin filaments at plasmodesmata.	Elife	7		2018		
46096	30181765	Li D., Wang X., Zheng H., Zhou K., Yao X., Tian Y., Zhu Y., Cao W., Cheng T.	Estimation of area- and mass-based leaf nitrogen contents of wheat and rice crops from water-removed spectra using continuous wavelet analysis.	Plant Methods	14	76	2018		
46097	30136055	Ma K., Liu Y.G.	DELLA-GRF4-mediated coordination of growth and nitrogen metabolism paves the way for a new Green Revolution.	Sci China Life Sci	61(9)	1130-1131	2018		
46098	30096145	Zhao Y., Zhang H., Xu J., Jiang C., Yin Z., Xiong H., Xie J., Wang X., Zhu X., Li Y., Zhao W., Rashid M.A.R., Li J., Wang W., Fu B., Ye G., Guo Y., Hu Z., Li Z., Li Z.	Loci and natural alleles underlying robust roots and adaptive domestication of upland ecotype rice in aerobic conditions.	PLoS Genet.	14(8)	e1007521	2018		
46099	30097007	Kaur G., Pati P.K.	In silico insights on diverse interacting partners and phosphorylation sites of respiratory burst oxidase homolog (Rbohs) gene families from Arabidopsis and rice.	BMC Plant Biol.	18(1)	161	2018		
46100	30369822	Ballesfin M.L.E., Vinarao R.B., Sapin J., Kim S.R., Jena K.K.	Development of an intergeneric hybrid between <i>Oryza sativa</i> L. and <i>Leersia perrieri</i> (A. Camus) Launert.	Breed. Sci.	68(4)	474-480	2018		
46101	30149357	Singha L.P., Sinha N., Pandey P.	Rhizoremediation prospects of Polyaromatic hydrocarbon degrading rhizobacteria, that facilitate glutathione and glutathione-S-transferase mediated stress response, and enhance growth of rice plants in pyrene contaminated soil.	Ecotoxicol. Environ. Saf.	164	579-588	2018		
46102	29893903	Pan G., Liu Y., Ji L., Zhang X., He J., Huang J., Qiu Z., Liu D., Sun Z., Xu T., Liu L., Wang C., Jiang L., Cheng X., Wan J.	Brassinosteroids mediate susceptibility to brown planthopper by integrating with the salicylic acid and jasmonic acid pathways in rice.	J. Exp. Bot.	69(18)	4433-4442	2018		
46103	30114676	Tang Y., Li X., Lu W., Wei X., Zhang Q., Lv C., Song N.	Enhanced photorespiration in transgenic rice over-expressing maize C4 phosphoenolpyruvate carboxylase gene contributes to alleviating low nitrogen stress.	Plant Physiol. Biochem.	130	577-588	2018		
46104	30157762	Butt H., Jamil M., Wang J.Y., Al-Babili S., Mahfouz M.	Engineering plant architecture via CRISPR/Cas9-mediated alteration of strigolactone biosynthesis.	BMC Plant Biol.	18(1)	174	2018		
46105	30116291	Xu L.X., Lin Y.X., Wang L.H., Zhou Y.C.	Dehiscence method: a seed-saving, quick and simple viability assessment in rice.	Plant Methods	14	68	2018		
46106	30121512	Chen J., Dou R., Yang Z., You T., Gao X., Wang L.	Phytotoxicity and bioaccumulation of zinc oxide nanoparticles in rice (Oryza sativa L.).	Plant Physiol. Biochem.	130	604-612	2018		
46107	30073424	Dong Q., Zhang Z.H., Wang L.L., Zhu Y.J., Fan Y.Y., Mou T.M., Ma L.Y., Zhuang J.Y.	Dissection and fine-mapping of two QTL for grain size linked in a 460-kb region on chromosome 1 of rice.	Rice (N Y)	11(1)	44	2018		
46108	30369819	Fujino K., Hirayama Y., Obara M., Ikegaya T.	Colocalization of QTLs for hull-cracked rice and grain size.in elite rice varieties in Japan.	Breed. Sci.	68(4)	449-454	2018		
46109	30189416	Cao X., Zhong C., Zhu C., Zhu L., Zhang J., Wu L., Jin Q.	Ammonium uptake and metabolism alleviate PEG-induced water stress in rice seedlings.	Plant Physiol. Biochem.	132	128-137	2018		
46110	30096253	Li Y., Tang D., Li L., Zhao X., Lin J., Liu X.	Plant Stature Related receptor-like Kinanse2 (PSRK2) acts as a factor that determines stem elongation toward gibberellins response in rice.	Biosci. Biotechnol. Biochem.	82(11)	1931-1941	2018	RLCK51	OsRLCK51, OsPSRK2, PSRK2, SDRLK-PSRK2, OsSDRLK-PSRK2
46111	30088087	Dutta S.S., Tyagi W., Pale G., Pohlong J., Aochen C., Pandey A., Pattanayak A., Rai M.	Marker-trait association for low-light intensity tolerance in rice genotypes from Eastern India.	Mol. Genet. Genomics	293(6)	1493-1506	2018		
46112	30070085	Li S., Liu S.M., Fu H.W., Huang J.Z., Shu Q.Y.	High-resolution melting-based TILLING of gamma ray-induced mutations in rice.	J Zhejiang Univ Sci B	19(8)	620-629			
46113	30151833	Cui X., Zhang Z., Wang Y., Wu J., Han X., Gu X., Lu T.	TWI1 regulates cell-to-cell movement of OSH15 to control leaf cell fate.	New Phytol.	221(1)	326-340	2019	OSH15,TWI1	OSH15, OsH15, OSKN3, Oskn3, HOS3, D6, d6, OSH15/Oskn3, HB253, H15, OsKNOX3, KNOX3,OsSRO1a, SRO1a, OsTWI1, RCD1, OsRCD1
46114	30425422	Chattopadhyay K., Nayak A.K., Marndi B.C., Poonam A., Chakraborty K., Sarkar R.K.	Novel screening protocol for precise phenotyping of salt-tolerance at reproductive stage in rice.	Physiol Mol Biol Plants	24(6)	1047-1058	2018		
46115	30131566	Fujishiro Y., Agata A., Ota S., Ishihara R., Takeda Y., Kunishima T., Ikeda M., Kyozuka J., Hobo T., Kitano H.	Comprehensive panicle phenotyping reveals that qSrn7/FZP influences higher-order branching.	Sci Rep	8(1)	12511	2018		
46116	30140180	Meng Q., Gupta R., Kwon S.J., Wang Y., Agrawal G.K., Rakwal R., Park S.R., Kim S.T.	Transcriptomic Analysis of <i>Oryza sativa</i> Leaves Reveals Key Changes in Response to <i>Magnaporthe oryzae</i> MSP1.	Plant Pathol. J.	34(4)	257-268	2018		
46117	29981171	Wang F., Longkumer T., Catausan S.C., Calumpang C.L.F., Tarun J.A., Cattin-Ortola J., Ishizaki T., Pariasca Tanaka J., Rose T., Wissuwa M., Kretzschmar T.	Genome-wide association and gene validation studies for early root vigour to improve direct seeding of rice.	Plant Cell Environ.	41(12)	2731-2743	2018	TIPS-11-9	OsTIPS-11-9
46118	30120263	Gao L., Fang Z., Zhou J., Li L., Lu L., Li L., Li T., Chen L., Zhang W., Zhai W., Peng H.	Transcriptional insights into the pyramided resistance to rice bacterial blight.	Sci Rep	8(1)	12358	2018		
46119	30148967	Zhang S., Fan C., Wang Y., Xia Y., Xiao W., Cui X.	Salt-tolerant and plant-growth-promoting bacteria isolated from high-yield paddy soil.	Can. J. Microbiol.	64(12)	968-978	2018		
46120	30246111	Shimatani Z., Fujikura U., Ishii H., Terada R., Nishida K., Kondo A.	Herbicide tolerance-assisted multiplex targeted nucleotide substitution in rice.	Data Brief	20	1325-1331	2018		
46121	30154819	Jose M., Raj R.D., Vinitha M.R., Madhu R., Varghese G., Bocianowski J., Yadav R., Patra B.C., Singh O.N., Rana J.C., Kurmari S.L., Thomas G.	The Prehistoric Indian Ayurvedic Rice <i>Shashtika</i> Is an Extant Early Domesticate With a Distinct Selection History.	Front Plant Sci	9	1203	2018		
46122	30097762	Lekklar C., Chadchawan S., Boon-Long P., Pfeiffer W., Chaidee A.	Salt stress in rice: multivariate analysis separates four components of beneficial silicon action.	Protoplasma	256(2)	331-347	2019		
46123	30083951	Wu Q., Peng X., Yang M., Zhang W., Dazzo F.B., Uphoff N., Jing Y., Shen S.	Rhizobia promote the growth of rice shoots by targeting cell signaling, division and expansion.	Plant Mol. Biol.	97(6)	507-523	2018		
46124	30186295	D?az-Benito P., Banakar R., Rodr?guez-Men?ndez S., Capell T., Pereiro R., Christou P., Abad?a J., Fern?ndez B., ?lvarez-Fern?ndez A.	Iron and Zinc in the Embryo and Endosperm of Rice (<i>Oryza sativa</i> L.) Seeds in Contrasting 2'-Deoxymugineic Acid/Nicotianamine Scenarios.	Front Plant Sci	9	1190	2018		
46125	30182615	Liu Y.W., Xue L.H., Yang L.Z., Wang Y.M.	[Effects of sewage irrigation on growth of rice seedlings and soil environment with straw incorporation.]	Ying Yong Sheng Tai Xue Bao	29(8)	2739-2745	2018		
46126	30099612	Xiang J., Chen X., Hu W., Xiang Y., Yan M., Wang J.	Overexpressing heat-shock protein OsHSP50.2 improves drought tolerance in rice.	Plant Cell Rep.	37(11)	1585-1595	2018		
46127	30099611	Mahjoubi H., Tamari Y., Takeda S., Bouchabk?-Coussa O., Hanin M., Herzog E., Schmit A.C., Chabout? ME., Ebel C.	The wheat TdRL1 is the functional homolog of the rice RSS1 and promotes plant SALT stress tolerance.	Plant Cell Rep.	37(12)	1625-1637	2018		
46128	30103148	Li X., Chen R., Chu Y., Huang J., Jin L., Wang G., Huang J.	Overexpression of RCc3 improves root system architecture and enhances salt tolerance in rice.	Plant Physiol. Biochem.	130	566-576	2018		
46129	30084027	Liu X., Yang C.Y., Miao R., Zhou C.L., Cao P.H., Lan J., Zhu X.J., Mou C.L., Huang Y.S., Liu S.J., Tian Y.L., Nguyen T.L., Jiang L., Wan J.M.	ds1/OsEMF1 interacts with OsARF11 to control rice architecture by regulation of brassinosteroid signaling.	Rice (N Y)	11(1)	46	2018		
46130	30171961	Martins P.C., Gutkoski L.C., Martins V.G.	Impact of acid hydrolysis and esterification process in rice and potato starch properties.	Int. J. Biol. Macromol.	120(Pt A)	959-965	2018		
46131	30120236	Liu C., Ou S., Mao B., Tang J., Wang W., Wang H., Cao S., Schl?ppi MR., Zhao B., Xiao G., Wang X., Chu C.	Early selection of bZIP73 facilitated adaptation of japonica rice to cold climates.	Nat Commun	9(1)	3302	2018	_,NCED1,_,_,NCED2,_	prx33,OSNCED1, OsNCED-1, OsNCED3, OsNced3, NCED3, OsNCED9, NCED9,POD2, OsPOD2, PRX13, OSPRX13,PRX2, OsPRX2,OSNCED2, OsNCED2, OsNCED5, NCED5,prx63, OsPRX63
46132	30072633	Zhang L., Zhao L., Lin L., Zhao L., Liu Q., Wei C.	A Novel Mutation of <i>OsPPDKB</i>, Encoding Pyruvate Orthophosphate Dikinase, Affects Metabolism and Structure of Starch in the Rice Endosperm.	Int J Mol Sci	19(8)		2018		
46133	30131812	Nguyen V.N.T., Lee S.B., Suh M.C., An G., Jung K.H.	OsABCG9 Is an Important ABC Transporter of Cuticular Wax Deposition in Rice.	Front Plant Sci	9	960	2018		
46134	30363138	Ito S., Yamagami D., Asami T.	Effects of gibberellin and strigolactone on rice tiller bud growth.	Journal of Pesticide Science	43(3)	220-223	2018		
46135	30150736	Wu H., Xiang J., Zhang Y., Zhang Y., Peng S., Chen H., Zhu D.	Effects of Post-Anthesis Nitrogen Uptake and Translocation on Photosynthetic Production and Rice Yield.	Sci Rep	8(1)	12891	2018		
46136	29727000	Takeuchi J., Jiang K., Hirabayashi K., Imamura Y., Wu Y., Xu Y., Miyakawa T., Nakamura H., Tanokura M., Asami T.	Rationally Designed Strigolactone Analogs as Antagonists of the D14 Receptor.	Plant Cell Physiol.	59(8)	1545-1554	2018		
46137	30144351	Qu L., Lin L.B., Xue H.W.	Rice miR394 suppresses leaf inclination through targeting an F-box gene, LEAF INCLINATION 4.	J Integr Plant Biol			2018	OSK1,LC4,MIR394	SKP1, OsSKP1,OsFbox053, OsFbox53, Os_F0309, OsLC4,  OsFBX32, FBX32,OsmiR394, miR394, osa-MIR394
46138	30149355	Andrade F.R., da Silva GN., Guimar?es KC., Barreto H.B.F., de Souza KRD., Guilherme L.R.G., Faquin V., Reis A.R.D.	Selenium protects rice plants from water deficit stress.	Ecotoxicol. Environ. Saf.	164	562-570	2018		
46139	30139795	Chen J., Wang J., Chen W., Sun W., Peng M., Yuan Z., Shen S., Xie K., Jin C., Sun Y., Liu X., Fernie A.R., Yu S., Luo J.	Metabolome Analysis of Multi-Connected Biparental Chromosome Segment Substitution Line Populations.	Plant Physiol.	178(2)	612-625	2018		
46140	30105828	Vasanthi S., Dass J.F.P.	Comparative genome-wide analysis of codon usage of different bacterial species infecting Oryza sativa.	J. Cell. Biochem.	119(11)	9346-9356	2018		
46141	30081817	Galeng-Lawilao J., Kumar A., De Waele D.	QTL mapping for resistance to and tolerance for the rice root-knot nematode, Meloidogyne graminicola.	BMC Genet.	19(1)	53	2018		
46142	30214671	Masuda S., Sasaki K., Kazama Y., Kisara C., Takeda S., Hanzawa E., Minamisawa K., Sato T.	Mapping of quantitative trait loci related to primary rice root growth as a response to inoculation with <i>Azospirillum</i> sp. strain B510.	Commun Integr Biol	11(3)	1-6	2018		
46143	30011040	Liu X., Lan J., Huang Y., Cao P., Zhou C., Ren Y., He N., Liu S., Tian Y., Nguyen T., Jiang L., Wan J.	Corrigendum: WSL5, a pentatricopeptide repeat protein, is essential for chloroplast biogenesis in rice under cold stress.	J. Exp. Bot.	69(18)	4495	2018		
46144	30072644	Chung I.M., Kwon C., An Y., Ali M., Lee H., Lim J.D., Kim S., Yang Y., Kim S.H., Ahmad A.	Characterization of New Polyphenolic Glycosidic Constituents and Evaluation of Cytotoxicity on a Macrophage Cell Line and Allelopathic Activities of <i>Oryza sativa</i>.	Molecules	23(8)		2018		
46145	30363369	Isaji S., Yoshinaga N., Teraishi M., Ogawa D., Kato E., Okumoto Y., Habu Y., Mori N.	Biosynthesis and accumulation of GABA in rice plants treated with acetic acid.	Journal of Pesticide Science	43(3)	214-219	2018		
46146	30092285	Yan J., Yao R., Chen L., Li S., Gu M., Nan F., Xie D.	Dynamic Perception of Jasmonates by the F-Box Protein COI1.	Mol Plant	11(10)	1237-1247	2018	TIFY11D,COI1	OsTIFY11d, OsJAZ1, JAZ1, OsJAZ 12, OsJAZ12, JAZ12,OsCOI1a, OsCOI1, Os_F0728, COI1a, F0728,  OsFBL4, FBL4
46147	30197654	Borrelli V.M.G., Brambilla V., Rogowsky P., Marocco A., Lanubile A.	The Enhancement of Plant disease resistance Using CRISPR/Cas9 Technology.	Front Plant Sci	9	1245	2018		
46148	30233646	Gao N., Teng J., Ye S., Yuan X., Huang S., Zhang H., Zhang X., Li J., Zhang Z.	Genomic Prediction of Complex Phenotypes Using Genic Similarity Based Relatedness Matrix.	Front Genet	9	364	2018		
46149	29979827	Golicz A.A., Bhalla P.L., Singh M.B.	MCRiceRepGP: a framework for the identification of genes associated with sexual reproduction in rice.	Plant J.	96(1)	188-202	2018		
46150	30175028	Badrhadad A., Nazarian-Firouzabadi F., Ismaili A.	Fusion of a chitin-binding domain to an antibacterial peptide to enhance resistance to <i>Fusarium solani</i> in tobacco (<i>Nicotiana tabacum</i>).	3 Biotech	8(9)	391	2018		
46151	30369815	Mizobuchi R., Fukuoka S., Tsuiki C., Tsushima S., Sato H.	Evaluation of major Japanese rice cultivars for resistance to bacterial grain rot caused by <i>Burkholderia glumae</i> and identification of standard cultivars for resistance.	Breed. Sci.	68(4)	413-419	2018		
46152	30147703	Zhu A., Zhang Y., Zhang Z., Wang B., Xue P., Cao Y., Chen Y., Li Z., Liu Q., Cheng S., Cao L.	Genetic Dissection of <i>qPCG1</i> for a Quantitative Trait Locus for Percentage of Chalky Grain in Rice (<i>Oryza sativa</i> L.).	Front Plant Sci	9	1173	2018		
46153	30044049	He K., Xiao H., Sun Y., Ding S., Situ G., Li F.	Transgenic microRNA-14 rice shows high resistance to rice stem borer.	Plant Biotechnol. J.	17(2)	461-471	2019		
46154	30196115	Huan Q., Zhang Y., Wu S., Qian W.	HeteroMeth: A Database of Cell-to-cell Heterogeneity in DNA Methylation.	Genomics, proteomics & bioinformatics	16(4)	234-243	2018		
46155	30097068	Cen W., Liu J., Lu S., Jia P., Yu K., Han Y., Li R., Luo J.	Comparative proteomic analysis of QTL CTS-12 derived from wild rice (Oryza rufipogon Griff.), in the regulation of cold acclimation and de-acclimation of rice (Oryza sativa L.) in response to severe chilling stress.	BMC Plant Biol.	18(1)	163	2018		
46156	30266409	Qi H., Jiang Z., Zhang K., Yang S., He F., Zhang Z.	PlaD: A Transcriptomics Database for Plant Defense Responses to Pathogens, Providing New Insights into Plant Immune System.	Genomics, proteomics & bioinformatics	16(4)	283-293	2018		
46157	30092808	Xi J., Patel M., Dong S., Que Q., Qu R.	Acetosyringone treatment duration affects large T-DNA molecule transfer to rice callus.	BMC Biotechnol.	18(1)	48	2018		
46158	30094490	Hyde L.S., Pellny T.K., Freeman J., Michaelson L.V., Simister R., McQueen-Mason SJ., Mitchell R.A.C.	Response of cell-wall composition and RNA-seq transcriptome to methyl-jasmonate in Brachypodium distachyon callus.	Planta	248(5)	1213-1229	2018		
46159	29522378	Li C., Liu S., Liu P., Wang Y., Xu C., Tao J., He C.	The YebN Leader RNA Acts as a Mn2+ Sensor Required for the Interaction of Xanthomonas oryzae and Rice.	Mol. Plant Microbe Interact.	31(9)	932-939	2018		
46160	30072810	Fartyal D., Agarwal A., James D., Borphukan B., Ram B., Sheri V., Agrawal P.K., Achary V.M.M., Reddy M.K.	Developing dual herbicide tolerant transgenic rice plants for sustainable weed management.	Sci Rep	8(1)	11598	2018		
46161	30253806	Lu Y., Xu Q., Liu Y., Yu Y., Cheng Z.Y., Zhao Y., Zhou D.X.	Dynamics and functional interplay of histone lysine butyrylation, crotonylation, and acetylation in rice under starvation and submergence.	Genome Biol.	19(1)	144	2018		
46162	30032251	Ren D., Hu J., Xu Q., Cui Y., Zhang Y., Zhou T., Rao Y., Xue D., Zeng D., Zhang G., Gao Z., Zhu L., Shen L., Chen G., Guo L., Qian Q.	FZP determines grain size and sterile lemma fate in rice.	J. Exp. Bot.	69(20)	4853-4866	2018	FZP	fzp*, fzp, OsBD1, BD1, OsERF#078, OsERF078, OsERF78, ERF78, AP2/EREBP#133, AP2/EREBP133, BFL1, SGDP7, OsSGDP7
46163	30235789	Waqas M., Feng S., Amjad H., Letuma P., Zhan W., Li Z., Fang C., Arafat Y., Khan M.U., Tayyab M., Lin W.	Protein Phosphatase (<i>PP2C9</i>) Induces Protein Expression Differentially to Mediate Nitrogen Utilization Efficiency in Rice under Nitrogen-Deficient Condition.	Int J Mol Sci	19(9)		2018		
46164	30425421	Mishra S.S., Behera P.K., Kumar V., Lenka S.K., Panda D.	Physiological characterization and allelic diversity of selected drought tolerant traditional rice (<i>Oryza sativa</i> L.) landraces of Koraput, India.	Physiol Mol Biol Plants	24(6)	1035-1046	2018		
46165	30185720	Imamura T., Obata C., Yoneyama K., Ichikawa M., Ikura A., Mutsuro-Aoki H., Ishikawa T., Kawai-Yamada M., Sasaki T., Kusano H., Shimada H.	DSH5, a dihydrosphingosine C4 hydroxylase gene family member, shows spatially restricted expression in rice and is lethal when expressed ectopically.	Genes Genet. Syst.	93(4)	135-142	2018		
46166	30253735	Reig-Valiente JL., Marqu?s L., Tal?n M., Domingo C.	Genome-wide association study of agronomic traits in rice cultivated in temperate regions.	BMC Genomics	19(1)	706	2018		
46167	30180793	Wang X., Zhang L., Ji H., Mo X., Li P., Wang J., Dong H.	Hpa1 is a type III translocator in Xanthomonas oryzae pv. oryzae.	BMC Microbiol.	18(1)	105	2018		
46168	30246370	Zhang W., Zhu K., Wang Z., Zhang H., Gu J., Liu L., Yang J., Zhang J.	Brassinosteroids function in spikelet differentiation and degeneration in rice.	J Integr Plant Biol			2018		
46169	30194417	Li X., Si W., Qin Q., Wu H., Jiang H.	Deciphering evolutionary dynamics of SWEET genes in diverse plant lineages.	Sci Rep	8(1)	13440	2018		
46170	30269017	Sebastian A., Prasad M.N.V.	Exogenous citrate and malate alleviate cadmium stress in Oryza sativa L.: Probing role of cadmium localization and iron nutrition.	Ecotoxicol. Environ. Saf.	166	215-222	2018		
46171	30217023	Chen L., Cao T., Zhang J., Lou Y.	Overexpression of <i>OsGID1</i> Enhances the Resistance of Rice to the Brown Planthopper <i>Nilaparvata lugens</i>.	Int J Mol Sci	19(9)		2018		
46172	30253267	Alamin M., Zeng D.D., Sultana M.H., Qin R., Jin X.L., Shi C.H.	Rice sdsfl1 plays a critical role in the regulation of plant structure through the control of different phytohormones and altered cell structure.	J. Plant Physiol.	231	110-123	2018		
46173	30185925	Zhu H., Li Y., Liang J., Luan X., Xu P., Wang S., Zhang G., Liu G.	Analysis of QTLs on heading date based on single segment substitution lines in rice (Oryza Sativa L.).	Sci Rep	8(1)	13232	2018		
46174	30205448	Inomata T., Baslam M., Masui T., Koshu T., Takamatsu T., Kaneko K., Pozueta-Romero J., Mitsui T.	Proteomics Analysis Reveals Non-Controlled Activation of Photosynthesis and Protein Synthesis in a Rice <i>NPP1</i> Mutant under High Temperature and Elevated CO? Conditions.	Int J Mol Sci	19(9)		2018		
46175	30274246	Brew-Appiah RAT., Sanguinet K.A.	Considerations of AOX Functionality Revealed by Critical Motifs and Unique Domains.	Int J Mol Sci	19(10)		2018		
46176	30236054	Lou D., Wang H., Yu D.	The sucrose non-fermenting-1-related protein kinases SAPK1 and SAPK2 function collaboratively as positive regulators of salt stress tolerance in rice.	BMC Plant Biol.	18(1)	203	2018		
46177	30279693	Buffon G., Blasi ?ADR., Rativa A.G.S., Lamb T.I., Gastmann R., Adamski J.M., Schwambach J., Ricachenevsky F.K., Heringer A.S., Silveira V., Lopes M.C.B., Sperotto R.A.	Unraveling Rice Tolerance Mechanisms Against <i>Schizotetranychus oryzae</i> Mite Infestation.	Front Plant Sci	9	1341	2018		
46178	30740570	Chen X., Xu P., Zhou J., Tao D., Yu D.	Mapping and breeding value evaluation of a semi-dominant semi-dwarf gene in upland rice.	Plant Divers	40(5)	238-244	2018		
46179	30174519	Zhou X., Li Y., Lai F.	Effects of different water management on absorption and accumulation of selenium in rice.	Saudi J Biol Sci	25(6)	1178-1182	2018		
46180	30466586	Chen H., Xu N., Wu Q., Yu B., Chu Y., Li X., Huang J., Jin L.	OsMADS27 regulates the root development in a NO3--Dependent manner and modulates the salt tolerance in rice (Oryza sativa L.).	Plant Sci.	277	20-32	2018		
46181	30180895	Li G., Jones K.C., Eudes A., Pidatala V.R., Sun J., Xu F., Zhang C., Wei T., Jain R., Birdseye D., Canlas P.E., Baidoo E.E.K., Duong P.Q., Sharma M.K., Singh S., Ruan D., Keasling J.D., Mortimer J.C., Loqu? D., Bartley L.E., Scheller H.V., Ronald P.C.	Overexpression of a rice BAHD acyltransferase gene in switchgrass (Panicum virgatum L.) enhances saccharification.	BMC Biotechnol.	18(1)	54	2018		
46182	30262707	Pandian B.A., Joel J., Nachimuthu V.V., Swaminathan M., Govintharaj P., Tannidi S., Sabariappan R.	Marker-aided selection and validation of various <i>Pi</i> gene combinations for rice blast resistance in elite rice variety ADT 43.	J. Genet.	97(4)	945-952	2018		
46183	30225538	Okada S., Sasaki M., Yamasaki M.	A novel Rice QTL qOPW11 Associated with panicle weight Affects Panicle and Plant Architecture.	Rice (N Y)	11(1)	53	2018		
46184	30101415	Du D., Liu M., Xing Y., Chen X., Zhang Y., Zhu M., Lu X., Zhang Q., Ling Y., Sang X., Li Y., Zhang C., He G.	Semi-dominant mutation in the cysteine-rich receptor-like kinase gene, ALS1, conducts constitutive defence response in rice.	Plant Biol (Stuttg)	21(1)	25-34	2019		
46185	30208074	Jochum M., Moncayo L.P., Jo Y.K.	Microalgal cultivation for biofertilization in rice plants using a vertical semi-closed airlift photobioreactor.	PLoS ONE	13(9)	e0203456	2018		
46186	30011122	Naalden D., Haegeman A., de Almeida-Engler J., Birhane Eshetu F., Bauters L., Gheysen G.	The Meloidogyne graminicola effector Mg16820 is secreted in the apoplast and cytoplasm to suppress plant host defense responses.	Mol. Plant Pathol.	19(11)	2416-2430	2018		
46187	30227868	Li X., Wu L., Wang J., Sun J., Xia X., Geng X., Wang X., Xu Z., Xu Q.	Genome sequencing of rice subspecies and genetic analysis of recombinant lines reveals regional yield- and quality-associated loci.	BMC Biol.	16(1)	102	2018		
46188	30212546	Zaka A., Grande G., Coronejo T., Quibod I.L., Chen C.W., Chang S.J., Szurek B., Arif M., Cruz C.V., Oliva R.	Natural variations in the promoter of OsSWEET13 and OsSWEET14 expand the range of resistance against Xanthomonas oryzae pv. oryzae.	PLoS ONE	13(9)	e0203711	2018		
46189	30212760	Zhu C.Q., Cao X.C., Zhu L.F., Hu W.J., Hu A.Y., Bai Z.G., Zhong C., Sun L.M., Liang Q.D., Huang J., Yang S.X., Zhang J.H., Jin Q.Y.	Ammonium mitigates Cd toxicity in rice (Oryza sativa) via putrescine-dependent alterations of cell wall composition.	Plant Physiol. Biochem.	132	189-201	2018		
46190	30261599	Tambara J?nior LUD., Cheriaf M., Rocha J.C.	Development of Alkaline-Activated Self-Leveling Hybrid Mortar Ash-Based Composites.	Materials (Basel)	11(10)		2018		
46191	30278313	Pandey C., Gupta M.	Selenium amelioration of arsenic toxicity in rice shows genotypic variation: A transcriptomic and biochemical analysis.	J. Plant Physiol.	231	168-181	2018		
46192	30209684	Pan W., Shen J., Zheng Z., Yan X., Shou J., Wang W., Jiang L., Pan J.	Overexpression of the Tibetan Plateau annual wild barley (Hordeum spontaneum) HsCIPKs enhances rice tolerance to heavy metal toxicities and other abiotic stresses.	Rice (N Y)	11(1)	51	2018		
46193	30497718	Qu X.P., Li J.S., Wang J.X., Wu L.Y., Wang Y.F., Chen C.J., Zhou M.G., Hou Y.P.	Effects of the dinitroaniline fungicide fluazinam on Fusarium fujikuroi and rice.	Pestic Biochem Physiol	152	98-105	2018		
46194	30262721	Lin W., Guo X., Pan X., Li Z.	Chlorophyll Composition, Chlorophyll Fluorescence, and Grain Yield Change in <i>esl</i> Mutant Rice.	Int J Mol Sci	19(10)		2018		
46195	30222760	Liang Y., Meng L., Lin X., Cui Y., Pang Y., Xu J., Li Z.	QTL and QTL networks for cold tolerance at the reproductive stage detected using selective introgression in rice.	PLoS ONE	13(9)	e0200846	2018		
46196	30258451	Biradar H., Karan R., Subudhi P.K.	Transgene Pyramiding of Salt Responsive Protein 3-1 (<i>SaSRP3-1</i>) and <i>SaVHAc1</i> From <i>Spartina alterniflora</i> L. Enhances salt tolerance in Rice.	Front Plant Sci	9	1304	2018		
46197	30176792	Pillai S.E., Kumar C., Patel H.K., Sonti R.V.	Overexpression of a cell wall damage induced transcription factor, OsWRKY42, leads to enhanced callose deposition and tolerance to salt stress but does not enhance tolerance to bacterial infection.	BMC Plant Biol.	18(1)	177	2018		
46198	30268972	Zhou B., Hu Z.J., Zhang H.J., Li J.Q., Ding W.J., Ma Z.J.	Bioactive staurosporine derivatives from the Streptomyces sp. NB-A13.	Bioorg. Chem.	82	33-40	2019		
46199	30188080	Xie X.M., Fang Z.P., Liao M., Huang Y., Huang X.H.	[Potential to Ensure Safe Production from Rice Fields Polluted with Heavy Cadmium by Combining a Rice Variety with Low Cadmium Accumulation, Humic Acid, and Sepiolite].	Huan Jing Ke Xue	39(9)	4348-4358	2018		
46200	30209741	Divya D., Sahu N., Nair S., Bentur J.S.	Map-based cloning and validation of a gall midge resistance gene, Gm8, encoding a proline-rich protein in the rice variety Aganni.	Mol. Biol. Rep.	45(6)	2075-2086	2018		
46201	30241349	Chen G., Wu C., He L., Qiu Z., Zhang S., Zhang Y., Guo L., Zeng D., Hu J., Ren D., Qian Q., Zhu L.	Knocking Out the Gene <i>RLS1</i> Induces Hypersensitivity to oxidative stress and Premature leaf senescence in Rice.	Int J Mol Sci	19(10)		2018		
46202	30179492	Kitano H., Choi J.H., Ueda A., Ito H., Hagihara S., Kan T., Kawagishi H., Itami K.	Discovery of Plant Growth Stimulants by C-H Arylation of 2-Azahypoxanthine.	Org. Lett.	20(18)	5684-5687	2018		
46203	30466583	He W., Lin L., Wang J., Zhang L., Liu Q., Wei C.	Inhibition of starch branching enzymes in waxy rice increases the proportion of long branch-chains of amylopectin resulting in the comb-like profiles of starch granules.	Plant Sci.	277	177-187	2018		
46204	30356418	Jahan N., Abd Manan F., Mansoor A., Zaidi M.A., Shahwani M.N., Javed M.A.	Development of Novel Protocol to Al3+ Stress Tolerance at Germination Stage in <i>Indica</i> Rice through Statistical Approaches.	ScientificWorldJournal	2018	8180174	2018		
46205	30101570	Huang Y., Zhao S., Fu Y., Sun H., Ma X., Tan L., Liu F., Sun X., Sun H., Gu P., Xie D., Sun C., Zhu Z.	Variation in the regulatory region of FZP causes increases in secondary inflorescence branching and grain yield in rice domestication.	Plant J.	96(4)	716-733	2018		
46206	30206275	Mongiano G., Titone P., Tamborini L., Pilu R., Bregaglio S.	Evolutionary trends and phylogenetic association of key morphological traits in the Italian rice varietal landscape.	Sci Rep	8(1)	13612	2018		
46207	30258455	Wang P., Xu X., Tang Z., Zhang W., Huang X.Y., Zhao F.J.	OsWRKY28 Regulates Phosphate and Arsenate Accumulation, root system Architecture and Fertility in Rice.	Front Plant Sci	9	1330	2018		
46208	30266907	Zhang K., Zhang Y., Wu W., Zhan X., Anis G.B., Rahman M.H., Hong Y., Riaz A., Zhu A., Cao Y., Sun L., Yang Z., Yang Q., Cao L., Cheng S.	qSE7 is a major quantitative trait locus (QTL) influencing stigma exsertion rate in rice (Oryza sativa L.).	Sci Rep	8(1)	14523	2018		
46209	30248965	L?thje S., Martinez-Cortes T.	Membrane-Bound Class III Peroxidases: Unexpected Enzymes with Exciting Functions.	Int J Mol Sci	19(10)		2018		
46210	30233605	Norton G.J., Travis A.J., Douglas A., Fairley S., Alves E.P., Ruang-Areerate P., Naredo M.E.B., McNally K.L., Hossain M., Islam M.R., Price A.H.	Genome Wide Association Mapping of Grain and Straw Biomass Traits in the Rice Bengal and Assam Aus Panel (BAAP) Grown Under Alternate Wetting and Drying and Permanently Flooded Irrigation.	Front Plant Sci	9	1223	2018		
46211	30094919	Guo X., Liu D., Chong K.	Cold signaling in plants: Insights into mechanisms and regulation.	J Integr Plant Biol	60(9)	745-756	2018		
46212	30209320	Mondal T.K., Rawal H.C., Chowrasia S., Varshney D., Panda A.K., Mazumdar A., Kaur H., Gaikwad K., Sharma T.R., Singh N.K.	Draft genome sequence of first monocot-halophytic species Oryza coarctata reveals stress-specific genes.	Sci Rep	8(1)	13698	2018		
46213	29955893	Li S., Li J., Zhang J., Du W., Fu J., Sutar S., Zhao Y., Xia L.	Synthesis-dependent repair of Cpf1-induced double strand DNA breaks enables targeted gene replacement in rice.	J. Exp. Bot.	69(20)	4715-4721	2018		
46214	30175846	Reddy S.H., Kambalimath S.K., Singhal R.K., Chikkakariyappa M.K., Muthurajan R., Rajanna M.P., Sreevathsa R., Sevanthi A.M., Mohapatra T., Sarla N., Chinnusamy V., Krishnan G.S., Singh A.K., Singh N.K., Sharma R.P., Sheshshayee S.M.	Allele-specific analysis of single parent backcross population identifies HOX10 transcription factor as a candidate gene regulating rice root growth.	Physiol Plant			2018		
46215	29982858	Biyiklioglu S., Alptekin B., Ani Akpinar B., Varella A.C., Hofland M.L., Weaver D.K., Bothner B., Budak H.	Correction to: A large-scale multiomics analysis of wheat stem solidness and the wheat stem sawfly feeding response, and syntenic associations in barley, Brachypodium, and rice.	Funct. Integr. Genomics	18(5)	611	2018		
46216	30242741	Zhao Y., Jiang C.H., Rehman R.M.A., Zhang H.L., Li J., Li Z.C.	Genetic analysis of roots and shoots in rice seedling by association mapping.	Genes Genomics	41(1)	95-105	2019		
46217	30011129	Xu C., Wang Y., Liu S., Xie Q., He N., Shi C., Niu X., He C., Li C., Tao J.	raxM regulates the AvrXa21 (raxX)-mediated immune response.	Mol. Plant Pathol.	19(11)	2363-2369	2018		
46218	30107076	Zhang H., Zhu S., Liu T., Wang C., Cheng Z., Zhang X., Chen L., Sheng P., Cai M., Li C., Wang J., Zhang Z., Chai J., Zhou L., Lei C., Guo X., Wang J., Wang J., Jiang L., Wu C., Wan J.	DELAYED HEADING Date1 interacts with OsHAP5C/D, delays flowering time and enhances yield in rice.	Plant Biotechnol. J.	17(2)	531-539	2019		
46219	30243763	Peng T., Qiao M., Liu H., Teotia S., Zhang Z., Zhao Y., Wang B., Zhao D., Shi L., Zhang C., Le B., Rogers K., Gunasekara C., Duan H., Gu Y., Tian L., Nie J., Qi J., Meng F., Huang L., Chen Q., Wang Z., Tang J., Tang X., Lan T., Chen X., Wei H., Zhao Q., Tang G.	A Resource for Inactivation of MicroRNAs Using Short Tandem Target Mimic Technology in Model and Crop Plants.	Mol Plant	11(11)	1400-1417	2018		
46220	30233603	Sevanthi A.M.V., Kandwal P., Kale P.B., Prakash C., Ramkumar M.K., Yadav N., Mahato A.K., Sureshkumar V., Behera M., Deshmukh R.K., Jeyaparakash P., Kar M.K., Manonmani S., Muthurajan R., Gopala K.S., Neelamraju S., Sheshshayee M.S., Swain P., Singh A.K., Singh N.K., Mohapatra T., Sharma R.P.	Whole Genome Characterization of a Few EMS-Induced Mutants of Upland Rice Variety Nagina 22 Reveals a Staggeringly High Frequency of SNPs Which Show High Phenotypic Plasticity Towards the Wild-Type.	Front Plant Sci	9	1179	2018		
46221	30236921	Li H., Xu H., Zhou S., Yu Y., Li H., Zhou C., Chen Y., Li Y., Wang M., Wang G.	Distribution and transformation of lead in rice plants grown in contaminated soil amended with biochar and lime.	Ecotoxicol. Environ. Saf.	165	589-596	2018		
46222	29955878	Wu Z., Tang D., Liu K., Miao C., Zhuo X., Li Y., Tan X., Sun M., Luo Q., Cheng Z.	Characterization of a new semi-dominant dwarf allele of SLR1 and its potential application in hybrid rice breeding.	J. Exp. Bot.	69(20)	4703-4713	2018		
46223	30257650	Cheng D., Tan M., Yu H., Li L., Zhu D., Chen Y., Jiang M.	Comparative analysis of Cd-responsive maize and rice transcriptomes highlights Cd co-modulated orthologs.	BMC Genomics	19(1)	709	2018		
46224	29579147	Moin M., Bakshi A., Madhav M.S., Kirti P.B.	Cas9/sgRNA-based genome editing and other reverse genetic approaches for functional genomic studies in rice.	Brief Funct Genomics	17(5)	339-351	2018		
46225	30241091	Chen Y., Gao Y., Zhu H., Romeis J., Li Y., Peng Y., Chen X.	Effects of straw leachates from Cry1C-expressing transgenic rice on the development and reproduction of Daphnia magna.	Ecotoxicol. Environ. Saf.	165	630-636	2018		
46226	30127412	De la Concepcion JC., Franceschetti M., Maqbool A., Saitoh H., Terauchi R., Kamoun S., Banfield M.J.	Publisher Correction: Polymorphic residues in rice NLRs expand binding and response to effectors of the blast pathogen.	Nat Plants	4(9)	734	2018		
46227	30242197	Chai C., Shankar R., Jain M., Subudhi P.K.	Genome-wide discovery of DNA polymorphisms by whole genome sequencing differentiates weedy and cultivated rice.	Sci Rep	8(1)	14218	2018		
46228	30209707	Kong W., Ding L., Cheng J., Wang B.	Identification and expression analysis of genes with pathogen-inducible cis-regulatory elements in the promoter regions in Oryza sativa.	Rice (N Y)	11(1)	52	2018		
46229	30369114	Srisuk N., Sakpuntoon V., Nutaratat P.	Production of Indole-3-Acetic Acid by <i>Enterobacter</i> sp. DMKU-RP206 Using Sweet Whey as a Low-Cost Feed Stock.	J. Microbiol. Biotechnol.	28(9)	1511-1516	2018		
46230	30231853	Robinson A.J., Tamiru M., Salby R., Bolitho C., Williams A., Huggard S., Fisch E., Unsworth K., Whelan J., Lewsey M.G.	AgriSeqDB: an online RNA-Seq database for functional studies of agriculturally relevant plant species.	BMC Plant Biol.	18(1)	200	2018		
46231	30187613	Fernie A.R.	Extending the cascade: identification of a mitogen-activated protein kinase phosphatase playing a key role in rice yield.	Plant J.	95(6)	935-936	2018		
46232	30283477	Mishra R., Joshi R.K., Zhao K.	Genome Editing in Rice: Recent Advances, Challenges, and Future Implications.	Front Plant Sci	9	1361	2018		
46233	30267916	Wang C., Wang W., Sardans J., An W., Zeng C., Abid A.A., Pe?uelas J.	Effect of simulated acid rain on CO2, CH4 and N2O fluxes and rice productivity in a subtropical Chinese paddy field.	Environ. Pollut.	243(Pt B)	1196-1205	2018		
46234	30010993	Grewal R.K., Saraf S., Deb A., Kundu S.	Differentially Expressed MicroRNAs Link Cellular Physiology to Phenotypic Changes in Rice Under Stress Conditions.	Plant Cell Physiol.	59(10)	2143-2154	2018		
46235	30351267	Marroquin-Guzman M., Krotz J., Appeah H., Wilson R.A.	Metabolic constraints on Magnaporthe biotrophy: loss of de novo asparagine biosynthesis aborts invasive hyphal growth in the first infected rice cell.	Microbiology (Reading, Engl.)			2018		
46236	30291199	Julkowska M.M.	Stress Management: OsIDS1 Modulates Histone Deacetylation to Repress Salt Tolerance Genes.	Plant Physiol.	178(2)	505-506	2018		
46237	30380735	Pan T., Lin L., Liu Q., Wei C.	In situ Degradation and Characterization of Endosperm Starch in Waxy Rice with the Inhibition of Starch Branching Enzymes during Seedling Growth.	Int J Mol Sci	19(11)		2018		
46238	30382146	Choi H.Y., Park H., Hong J.K., Kim S.D., Kwon J.Y., You S., Do J., Lee D.Y., Kim H.H., Kim D.I.	N-glycan Remodeling Using Mannosidase Inhibitors to Increase High-mannose Glycans on Acid alpha-Glucosidase in Transgenic Rice Cell Cultures.	Sci Rep	8(1)	16130	2018		
46239	30343386	Mace E., Innes D., Hunt C., Wang X., Tao Y., Baxter J., Hassall M., Hathorn A., Jordan D.	The Sorghum QTL Atlas: a powerful tool for trait dissection, comparative genomics and crop improvement.	Theor. Appl. Genet.			2018		
46240	30367286	Lee K.H., Park S.W., Kim Y.J., Koo Y.J., Song J.T., Seo H.S.	grain width 2 (GW2) and its interacting proteins regulate seed development in rice (Oryza sativa L.).	Botanical Studies	59(1)	23	2018	PDIL1-1,GW2	OsPDIL1;1, PDIL1;1, PDIL 1-1, PDI, OsPDIL1-1, OsTrx28, Trx28,OsGW2, OsRING429, RING429, GNL44, OsGNL44
46241	30291462	Hu J., Chang X., Zou L., Tang W., Wu W.	Identification and fine mapping of Bph33, a new brown planthopper resistance gene in rice (Oryza sativa L.).	Rice (N Y)	11(1)	55	2018	BPH30	Bph33, Bph30
46242	30341176	Mitchell D., Renda A.J., Douds C.A., Babitzke P., Assmann S.M., Bevilacqua P.C.	In vivo RNA structural probing of uracil and guanine base-pairing by 1-ethyl-3-(3-dimethylaminopropyl)carbodiimide (EDC).	RNA	25(1)	147-157	2019		
46243	30405678	Formentin E., Sudiro C., Ronci M.B., Locato V., Barizza E., Stevanato P., Ijaz B., Zottini M., De Gara L., Lo Schiavo F.	H2O2 Signature and Innate Antioxidative Profile Make the Difference Between Sensitivity and Tolerance to Salt in Rice Cells.	Front Plant Sci	9	1549	2018		
46244	30107432	Tian L., Xing Y., Fukuda M., Li R., Kumamaru T., Qian D., Dong X., Qu L.Q.	A conserved motif is essential for the correct assembly of proglutelins and for their export from the endoplasmic reticulum in rice endosperm.	J. Exp. Bot.	69(21)	5029-5043	2018		
46245	30327662	Sharma N., Sinha V.B., Gupta N., Rajpal S., Kuchi S., Sitaramam V., Parsad R., Raghuram N.	Phenotyping for Nitrogen Use Efficiency: Rice Genotypes Differ in N-Responsive Germination, Oxygen Consumption, Seed Urease Activities, Root Growth, Crop Duration, and Yield at Low N.	Front Plant Sci	9	1452	2018		
46246	30314465	Xiao G., Li B., Chen H., Chen W., Wang Z., Mao B., Gui R., Guo X.	Overexpression of PvCO1, a bamboo CONSTANS-LIKE gene, delays flowering by reducing expression of the FT gene in transgenic Arabidopsis.	BMC Plant Biol.	18(1)	232	2018		
46247	30361842	Liang J., Guo S., Sun B., Liu Q., Chen X., Peng H., Zhang Z., Xie Q.	Constitutive expression of REL1 confers the rice response to drought stress and abscisic acid.	Rice (N Y)	11(1)	59	2018	DT11,BHLH148,GER6,ACL2,DREB1A,PIP1;2,RSUS2,PIP1A,2R_MYB36 ,REL1,SAPK2	OsDT11,OsbHLH148, bHLH148,OsGLP8-7, GLP8-7, OsGER6, OsRGLP2, RGLP2, OsCDP8.7, CDP8.7,OsACL2,OsDREB1A, Os DREB1A, CBF3, OsCBF3, OsDREB1A/OsCBF3, ERF24, OsERF24, OsERF024, OsERF#024, AP2/EREBP#114, AP2/EREBP114, OsDREBL,OsPIP1;2, PIP1-2, OsPIP1-2,sus2, RSus2(t), SUS2, SS1, OsScS1, RSs1, RSus2, OsSUS2, RSS1, RSus1, OsSusy2, Susy2, OsRSUS1, RSUS1,OsPIP1a, OsPIP1;1, PIP1a, RWC-1, PIP1-1, RWC1, OsPIP1-1, PIP1;1, PIP1-5,OsMYB2, MYB2, Os2R_MYB36 ,OsREL1,OsSAPK2, OsSnRK2.2, SnRK2.2
46248	30159898	Kobayashi A., Kim H.J., Tomita Y., Miyazawa Y., Fujii N., Yano S., Yamazaki C., Kamada M., Kasahara H., Miyabayashi S., Shimazu T., Fusejima Y., Takahashi H.	Circumnutational movement in rice coleoptiles involves the gravitropic response: analysis of an agravitropic mutant and space-grown seedlings.	Physiol Plant	165(3)	464-475	2019		
46249	30222251	Sugano S., Maeda S., Hayashi N., Kajiwara H., Inoue H., Jiang C.J., Takatsuji H., Mori M.	Tyrosine phosphorylation of a receptor-like cytoplasmic kinase, BSR1, plays a crucial role in resistance to multiple pathogens in rice.	Plant J.	96(6)	1137-1147	2018		
46250	30333842	Misra G., Badoni S., Domingo C.J., Cuevas R.P.O., Llorente C., Mbanjo E.G.N., Sreenivasulu N.	Deciphering the Genetic Architecture of Cooked Rice Texture.	Front Plant Sci	9	1405	2018		
46251	30311098	Chang Z., Jin M., Yan W., Chen H., Qiu S., Fu S., Xia J., Liu Y., Chen Z., Wu J., Tang X.	The ATP-binding cassette (ABC) transporter OsABCG3 is essential for pollen development in rice.	Rice (N Y)	11(1)	58	2018		
46252	30287379	Li H., Wen Y., Wang J., Sun B.	Relations between chain-length distribution, molecular size, and amylose content of rice starches.	Int. J. Biol. Macromol.	120(Pt B)	2017-2025	2018		
46253	30282746	Guerriero G., Stokes I., Exley C.	Is callose required for silicification in plants?	Biol. Lett.	14(10)		2018		
46254	30279356	Ji Z., Wang C., Zhao K.	Rice Routes of Countering <i>Xanthomonas oryzae</i>.	Int J Mol Sci	19(10)		2018		
46255	30409674	Bao G., Ashraf U., Wang C., He L., Wei X., Zheng A., Mo Z., Tang X.	Molecular basis for increased 2-acetyl-1-pyrroline contents under alternate wetting and drying (AWD) conditions in fragrant rice.	Plant Physiol. Biochem.	133	149-157	2018		
46256	30102323	Yang Y., Chou H.L., Crofts A.J., Zhang L., Tian L., Washida H., Fukuda M., Kumamaru T., Oviedo O.J., Starkenburg S.R., Okita T.W.	Selective sets of mRNAs localize to extracellular paramural bodies in a rice glup6 mutant.	J. Exp. Bot.	69(21)	5045-5058	2018	GLUD1,GLUC,PRO13A.1,GLUB6,PRO13B.15,PRO13B.17,_,GLU7,GLUA3,GLUB4,PRO13B.16,GLUB1,PRO13B.2,CDP3.2,GLUA2,GLUBX,GLUP6,CYSP13,PRO10.4,_,PRO13A.4,PRO13A.2,PRO13B.1,PRO13B.8,PRO13B.3,GLUB5,RBPD,_,PRO13B.9,GLUA1,GLB1	GluD1, GluD-1, OsGluD-1, OsEnS-33, EnS-33, GluD,GluC, OsEnS-36, EnS-36, GLU2.2, GluC-1, OsGluC-1,RP6, Prol-18, OsEnS-93, pro13a.1, OsPRO13A.1, PROLM25,OsEnS-32, EnS-32, GluB6, OsGluB6,pro13b.15, OsPRO13B.15, PROLM11,Prol-11, pro13b.17, OsPRO13B.17, PROLM13,,Glu7*(GluB2), Glu7, GluB2, GLUB2, GLUB-2, GluB-2, GluB-7, GLUB7,Glua3*, GLUA-3, GT22, GT3, Glu21, GluA-3, OsEnS-47, EnS-47, GLU3,GluB4, GluB-4, GluB-5, GluB5, GluB-4/5,Prol-10, pro13b.16, OsPRO13B.16, PROLM12,GluB1, GluB1-A, GluB-1a, GluB-1, OsGluB1, GluB-1b, OsGluB-1b, GLUB1B,Prol-21, pro13b.2, OsPRO13B.2, PROLM20,FLOC2, OsFLOC2, OsCDP3.2,Glua2*, Glua2, GLUA-2, GluA-2, Glu20, GluA2, OsEnS-137,OsGluBX, OsGluBX-J, OsGluBX-I, OsEnS-31, EnS-31, GLU2.1, GluB7, OsGluB7, GluB4, OsGluB4,glup6(t), Glup6(t), Glup6, OsVPS9A, VPS9a, GPA2/VPS9a, GPA2, GLUP6/GEF,CysP13, OsCYSP13, CpP13, PG5a, Prol-06, pro13b.11, OsPRO13B.11, PROLM9, OsPROLM9,Prol-23, pro10.4, SSA5, OsPRO10.4,,Prol-25, Prol-28, Prol-29, Prol-30, pro13a.4, OsPRO13A.4, PROLM28,Prol-19, OsEnS-94, RM1, OsRM1, pro13a.2, OsPRO13A.2, PROLM26,Prol-20, pro13b.1, OsPRO13B.1, PROLM19 ,Prol-04, pro13b.8, OsPRO13B.8, PROLM4,Prol-22, pro13b.3, OsPRO13B.3, PROLM22,GluB5, GLU2.3 ,OsRBP-D, RBP-D,,Prol-05, pro13b.9, OsPRO13B.9,Glua1*, Glua1, GLUA-1, GluA-1, GluA1, Glu19, OsEnS-16,glb1(t)*, glb1(t), glb1, alpha-Glb, Glb-1, OsGlb1, Glb1, Glb, OsEnS-77
46257	30297755	Wu Y., Zhao S., Li X., Zhang B., Jiang L., Tang Y., Zhao J., Ma X., Cai H., Sun C., Tan L.	Deletions linked to PROG1 gene participate in plant architecture domestication in Asian and African rice.	Nat Commun	9(1)	4157	2018	_,PROG1,_,_	ZnF8, OrZnF8,OsPROG1, ZOS7-02, OsZOS7-02,ZnF5, OrZnF5,ZnF7, OrZnF7
46258	30414570	Sarkar A., Pramanik K., Mitra S., Soren T., Maiti T.K.	Enhancement of growth and salt tolerance of rice seedlings by ACC deaminase-producing Burkholderia sp. MTCC 12259.	J. Plant Physiol.	231	434-442	2018		
46259	30350245	Takaiwa F., Ogo Y., Wakasa Y.	Specific region affects the difference in accumulation levels between apple food allergen Mal d 1 and birch pollen allergen Bet v 1 which are expressed in vegetative tissues of transgenic rice.	Plant Mol. Biol.	98(4-5)	439-454	2018		
46260	30253007	Forlani G., Bertazzini M., Cagnano G.	Stress-driven increase in proline levels, and not proline levels themselves, correlates with the ability to withstand excess salt in a group of 17 Italian rice genotypes.	Plant Biol (Stuttg)	21(2)	336-342	2019		
46261	30391410	Zhou X., Jiang G., Yang L., Qiu L., He P., Nong C., Wang Y., He Y., Xing Y.	Gene diagnosis and targeted breeding for blast-resistant Kongyu 131 without changing regional adaptability.	J Genet Genomics	45(10)	539-547	2018		
46262	30229625	Wan Y.N., Liu Z., Aboubacar Y.C., Yu Y., Wang Q., Li H.F.	[Lead Uptake and Accumulation in Rice (<i>Oryza sativa</i> L.) with Water Management and Selenite Fertilization].	Huan Jing Ke Xue	39(10)	4759-4765	2018		
46263	30510730	Adedayo B.C., Adebayo A.A., Nwanna E.E., Oboh G.	Effect of cooking on glycemic index, antioxidant activities, alpha-amylase, and alpha-glucosidase inhibitory properties of two rice varieties.	Food Sci Nutr	6(8)	2301-2307	2018		
46264	30364694	Chutimanukul P., Kositsup B., Plaimas K., Buaboocha T., Siangliw M., Toojinda T., Comai L., Chadchawan S.	Data in support of photosynthetic responses in a chromosome segment substitution line of 'Khao Dawk Mali 105' rice at seedling stage.	Data Brief	21	307-312	2018		
46265	30466594	Wang Z., Chen M., Zhang Y., Huang L., Wang S., Tao Y., Qian P., Mijiti A., Gu A., Zhang H., Shi S., Cheng H., Wu Y., Xiao L., Ma H.	A cupin domain is involved in alpha-amylase inhibitory activity.	Plant Sci.	277	285-295	2018		
46266	30302902	Huang Y., Bai X., Luo M., Xing Y.	short panicle 3 controls panicle architecture by upregulating APO2/RFL and increasing cytokinin content in rice.	J Integr Plant Biol			2018	GN1A,RFL,CKX9,CKX5,CKX3,IPT3,IPT7	Gn1a, OsCKX2, CKX2, ckx2, Gn1a/OsCKX2, Os CKX2, CKX2/Gn1a,RFL, OSL, FL, APO2, APO2/RFL, SSC, SSC/RFL/APO2, OsRFL, OsFL, OsAPO2, OsSSC,OsCKX9,OsCKX5, ckx5,OsCKX3, ckx3,OsIPT3,OsIPT7
46267	30402456	Chen J., Li L.	Multiple Regression Analysis Reveals MicroRNA Regulatory Networks in <i>Oryza sativa</i> under Drought Stress.	International Journal of Genomics	2018	9395261	2018		
46268	30336276	Shan J., Cai Z., Zhang Y., Xu H., Rao J., Fan Y., Yang J.	The underlying pathway involved in inter-subspecific hybrid male sterility in rice.	Genomics			2018		
46269	30368115	Wang Y., Cui Y., Hu G., Wang X., Chen H., Shi Q., Xiang J., Zhang Y., Zhu D., Zhang Y.	Reduced bioactive gibberellin content in rice seeds under low temperature leads to decreased sugar consumption and low seed germination rates.	Plant Physiol. Biochem.	133	1-10	2018		
46270	30405671	Sawada T., Itoh M., Nakamura Y.	Contributions of Three Starch Branching Enzyme Isozymes to the Fine Structure of Amylopectin in Rice Endosperm.	Front Plant Sci	9	1536	2018		
46271	30382312	Hu Y., Li S., Xing Y.	Lessons from natural variations: artificially induced heading date variations for improvement of regional adaptation in rice.	Theor. Appl. Genet.	132(2)	383-394	2019		
46272	30386414	Bureau C., Lanau N., Ingouff M., Hassan B., Meunier A.C., Divol F., Sevilla R., Mieulet D., Dievart A., P?rin C.	A protocol combining multiphoton microscopy and propidium iodide for deep 3D root meristem imaging in rice: application for the screening and identification of tissue-specific enhancer trap lines.	Plant Methods	14	96	2018		
46273	30341356	Poli Y., Balakrishnan D., Desiraju S., Panigrahy M., Voleti S.R., Mangrauthia S.K., Neelamraju S.	Genotype?~?Environment interactions of Nagina22 rice mutants for yield traits under low phosphorus, water limited and normal irrigated conditions.	Sci Rep	8(1)	15530	2018		
46274	30347730	Jiang J.Z., Kuo C.H., Chen B.H., Chen M.K., Lin C.S., Ho S.L.	Effects of <i>OsCDPK1</i> on the Structure and Physicochemical Properties of Starch in Developing Rice Seeds.	Int J Mol Sci	19(10)		2018		
46275	30337936	Cui Y., Zhang F., Zhou Y.	The Application of Multi-Locus GWAS for the Detection of <EM class="gene">salt-tolerance</EM> Loci in Rice.	Front Plant Sci	9	1464	2018		
46276	30471734	Fang C., Li L., Zhang P., Wang D., Yang L., Reza B.M., Lin W.	Lsi1 modulates the antioxidant capacity of rice and protects against ultraviolet-B radiation.	Plant Sci.	278	96-106	2019		
46277	30322083	Yu J., Zhao W., Tong W., He Q., Yoon M.Y., Li F.P., Choi B., Heo E.B., Kim K.W., Park Y.J.	A Genome-Wide Association Study Reveals Candidate Genes Related to salt tolerance in Rice (<i>Oryza sativa</i>) at the Germination Stage.	Int J Mol Sci	19(10)		2018		
46278	30459776	Zhu Z., Li X., Wei Y., Guo S., Sha A.	Identification of a Novel QTL for panicle length From Wild Rice (<i>Oryza minuta</i>) by Specific Locus Amplified Fragment Sequencing and High Density Genetic Mapping.	Front Plant Sci	9	1492	2018		
46279	30289560	Vishal B., Krishnamurthy P., Ramamoorthy R., Kumar P.P.	OsTPS8 controls yield-related traits and confers salt stress tolerance in rice by enhancing suberin deposition.	New Phytol.	221(3)	1369-1386	2019		
46280	30369468	Wu B., Hu W., Xing Y.Z.	[The history and prospect of rice genetic breeding in China].	Yi Chuan	40(10)	841-857	2018		
46281	30359375	C H B., S BN., V AK., G H., H K MS., Sk H., T DK., M A., R R K., A Y., K P., M B V N K., K S., V P B., A S H., G S L., G R., S M B., M S M., P S., A R F., B C V., A G., B P M S., Ali J., R M S.	Marker-assisted pyramiding of two major, broad-spectrum bacterial blight resistance genes, Xa21 and Xa33 into an elite maintainer line of rice, DRR17B.	PLoS ONE	13(10)	e0201271	2018	XA21,XA33	Xa21*, Xa21, OsXA21,Xa33
46282	30347700	Fletcher J.C.	The CLV-WUS Stem Cell Signaling Pathway: A Roadmap to Crop Yield Optimization.	Plants (Basel)	7(4)		2018		
46283	30285603	Chen G., Zou Y., Hu J., Ding Y.	Genome-wide analysis of the rice PPR gene family and their expression profiles under different stress treatments.	BMC Genomics	19(1)	720	2018		
46284	30300786	Saenguthai K., Chomean S., Kaset C.	The evaluation of Oryza sativa L (Black rice) extracts for detection of spermatozoa on the clothing and vaginal swab samples.	Leg Med (Tokyo)	35	91-97	2018		
46285	30372430	Wang A., Shu X., Niu X., Zhao W., Ai P., Li P., Zheng A.	Comparison of gene co-networks analysis provide a systems view of rice (Oryza sativa L.) response to Tilletia horrida infection.	PLoS ONE	13(10)	e0202309	2018	PR1B,STI1A,IAA20,HD5,BGLU12,HSP71.1,PR10A, CK2ALPHA3,CRLL2,TPKB,GL1D,WRKY70,ABA8OX2,VPE4,SDG725,_,_,WRKY24	OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1, OsPR1a, PR1a,OsHop/Sti1a, Hop/Sti1a, Sti1a,OsIAA20,Hd5(t)*, Hd5, qHD5, HAP3H, OsHAP3H, NF-YB, CBF-A, DTH8 , qHD5(t)*, Ghd8, Ghd8/DTH8, Lhd1, NF-YB11, OsNF-YB11, NFYB11, LH8, DTH8/Ghd8, RH8, DTH8/Ghd8/LHD1, CAR8, DTH8/Ghd8/ OsHAP3H, EF8, OsEF8,Os4bglu12, Os4BGlu12, 4BGlu12, OsTAGG2, TAGG2,OsHsp71.1, OsHSP71.1, OsMED37_3, MED37_3 ,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsCK2alpha3, CK2alpha3, OsCKA2-3, CKA2-3,OsCrll2, Crll2, CRL1L2,TPKb, OsTPKb,OsMyb3, OSMYB3, MYB3, OsGL1D, OsMYB46, MYB46, Kala3, OsKala3, SMG3, OsSMG3, Os2R_MYB39, 2R_MYB39,OsWRKY70,OsABA8OX2, OsABA8ox2, CYP707A6, OsCYP707A6, OsAba-ox2, OsABA8ox2, OsABA8OH2, ABA8OH2, ABA8'-OH2, OsABA8'ox2, ABA8'ox2, OsABAX2, ABAX2, OsABA8'OH2, ABA8'OH2,OsVPE4, OsaLeg4, Leg4,OsSDG725, OsSET8, ASHH2,PsbP,OsMyb4, OSMYB4, MYB4, OsEnS-11, OsGL1C, GL1C, OsMYB13, MYB13, Os2R_MYB11, 2R_MYB11 ,OsWRKY24
46286	30466578	Pandiarajan R., Grover A.	In vivo promoter engineering in plants: Are we ready?	Plant Sci.	277	132-138	2018		
46287	30053197	Julia C.C., Rose T.J., Pariasca-Tanaka J., Jeong K., Matsuda T., Wissuwa M.	Phosphorus uptake commences at the earliest stages of seedling development in rice.	J. Exp. Bot.	69(21)	5233-5240	2018		
46288	30051586	Hua K., Tao X., Zhu J.K.	Expanding the base editing scope in rice by using Cas9 variants.	Plant Biotechnol. J.	17(2)	499-504	2019		
46289	30405680	Fu J., Song X., Liu B., Shi Y., Shen W., Fang Z., Zhang L.	Fitness Cost of Transgenic <i>cry1Ab/c</i> Rice Under Saline-Alkaline Soil Condition.	Front Plant Sci	9	1552	2018		
46290	30101427	Stella de Freitas TF., Stout M.J., Sant'Ana J.	Effects of exogenous methyl jasmonate and salicylic acid on rice resistance to Oebalus pugnax.	Pest Manag. Sci.	75(3)	744-752	2019		
46291	30296601	Zhu Q., Zeng D., Yu S., Cui C., Li J., Li H., Chen J., Zhang R., Zhao X., Chen L., Liu Y.G.	From Golden Rice to aSTARice: Bioengineering Astaxanthin Biosynthesis in Rice Endosperm.	Mol Plant	11(12)	1440-1448	2018		
46292	30340520	Feng B., Zhang C., Chen T., Zhang X., Tao L., Fu G.	Salicylic acid reverses pollen abortion of rice caused by heat stress.	BMC Plant Biol.	18(1)	245	2018	MIL2,DTM1,EAT1	OsTDL1A, TDL1A, OsMIL2, OsTDL1A/MIL2, OsTDL1a ,OsDTM1,OsEAT1, OsbHLH141, EAT1/DTD1, bHLH141, DTD1, DTD, DLN120, OsDLN120
46293	30286719	Yang M., Xu Z., Zhao W., Liu Q., Li Q., Lu L., Liu R., Zhang X., Cui F.	Rice stripe virus-derived siRNAs play different regulatory roles in rice and in the insect vector Laodelphax striatellus.	BMC Plant Biol.	18(1)	219	2018		
46294	30339812	Zhang S., Lin J., Su L., Zhou Z.	pDHS-DSET: Prediction of DNase I hypersensitive sites in plant genome using DS evidence theory.	Anal. Biochem.	564-565	54-63	2019		
46295	30207632	Lee T.K., Lee D., Yu J.S., Jo M.S., Baek S.C., Shin M.S., Ko Y.J., Kang K.S., Kim K.H.	Biological Evaluation of a New Lignan from the Roots of Rice (Oryza sativa).	Chem. Biodivers.	15(11)	e1800333	2018		
46296	30361672	Xu C., Cheng J., Lin H., Lin C., Gao J., Shen Z.	Characterization of transgenic rice expressing fusion protein Cry1Ab/Vip3A for insect resistance.	Sci Rep	8(1)	15788	2018		
46297	30325666	Whitehouse K.J., Owoborode O.F., Adebayo O.O., Oyatomi O.A., Olaniyan A.B., Abberton M.T., Hay F.R.	Further Evidence That the Genebank Standards for Drying Orthodox Seeds May Not Be Optimal for Subsequent seed longevity.	Biopreserv Biobank	16(5)	327-336	2018		
46298	30239708	Chen S., Saito N., Encabo J.R., Yamada K., Choi I.R., Kishima Y.	Ancient Endogenous Pararetroviruses in Oryza Genomes Provide Insights into the Heterogeneity of Viral Gene Macroevolution.	Genome Biol Evol	10(10)	2686-2696	2018		
46299	30325151	Tian C., Zhou X., Liu Q., Xie G.X., Rong X.M., Zhang Y.P., Huang S.Y., Peng J.W.	Effects of the reduction of controlled-release urea application on nitrogen leaching in double cropping paddy field.	Ying Yong Sheng Tai Xue Bao	29(10)	3267-3274	2018		
46300	30744894	Wang H., Guo Z., Shen W., Lou Y.	Increasing tolerance to bispyribac-sodium is able to allow glutathione homeostasis to recover in indica rice compared with japonica rice.	Pestic Biochem Physiol	153	28-35	2019		
46301	29931324	Qi M., Li Z., Liu C., Hu W., Ye L., Xie Y., Zhuang Y., Zhao F., Teng W., Zheng Q., Fan Z., Xu L., Lang Z., Tong Y., Zhang Y.	CGT-seq: epigenome-guided de novo assembly of the core genome for divergent populations with large genome.	Nucleic Acids Res.	46(18)	e107	2018		
46302	30247132	Ejaz M., Raja N.I., Mashwani Z.U., Ahmad M.S., Hussain M., Iqbal M.	Effect of silver nanoparticles and silver nitrate on growth of rice under biotic stress.	IET Nanobiotechnol	12(7)	927-932	2018		
46303	30359900	Huang G., Ding C., Zhou Z., Zhang T., Wang X.	A tillering application of zinc fertilizer based on basal stabilization reduces Cd accumulation in rice (Oryza sativa L.).	Ecotoxicol. Environ. Saf.	167	338-344	2019		
46304	30753229	Suk-Man Kim, Russell F Reinke	A novel resistance gene for bacterial blight in rice, Xa43(t) identified by GWAS, confirmed by QTL mapping using a bi-parental population.	PLoS ONE	14(2)	e0211775	2019	XA43	Xa43(t), Xa43
46305	20494951	Li L., Zhen-Ying Shi, Li L., Ge-Zhi Shen, Xin-Qi Wang, Lin-Sheng An, Jing-Liu Zhang	Overexpression of ACL1 (abaxially curled leaf 1) increased Bulliform cells and induced Abaxial curling of leaf blades in rice.	Mol Plant	3(5)	807-17	2010	ACL2,ACL1	OsACL2,OsACL1, ACL2, OsACL2
46306	0	Chen L.	Rac/Rop Small GTPases in Rice Innate Immunity	Thesis			2010	PR10A,PAL1,RAC5,RAC4,STI1A,FLS2,STI1B,RAC1,SG2,RAC3,CERK1,RAC7,RAC6	PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6,Osrac5, OsRac5, RACD, OsRacD, OsRACD,OsRAC4, OsRac4, ROP4, OsRop4,OsHop/Sti1a, Hop/Sti1a, Sti1a,Os-FLS2, OsFLS2, OsCLV2f, CLV2f,OsHop/Sti1b, Hop/Sti1b, Sti1b,OsRAC1, OsRac1, Os Rac1, Rac1, Os-Rac1,OsSERK1, SERK1, OsBAK1, BAK1, OsSERK1/OsBAK1, OsBISERK1, BISERK1, OsSerk1, OsBAK1-1, 08SG2/OsBAK1, 08SG2, OsSG2,OsRac3,OsCERK1, OsLysM-RLK9, Os-CERK1, Os-LysM-RLK9, OsLysMRLK9, OsCERK1/OsLYK9, OsLYK9, LYK9,OSRAC7, OsRac7, ROP5, OsRop5,OsRacB, RacB, OsRac6
46307	20227662	Chen L., Hamada S., Fujiwara M., Zhu T., Nguyen Phuong Thao, Hann Ling Wong, Krishna P., Ueda T., Kaku H., Shibuya N., Kawasaki T., Shimamoto K.	The Hop/Sti1-Hsp90 chaperone complex facilitates the maturation and transport of a PAMP receptor in rice innate immunity.	Cell Host Microbe	7(3)	185-96	2010	STI1A,STI1B,PR10A,CERK1,RAC1,FLS2,PAL1,SG2	OsHop/Sti1a, Hop/Sti1a, Sti1a,OsHop/Sti1b, Hop/Sti1b, Sti1b,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsCERK1, OsLysM-RLK9, Os-CERK1, Os-LysM-RLK9, OsLysMRLK9, OsCERK1/OsLYK9, OsLYK9, LYK9,OsRAC1, OsRac1, Os Rac1, Rac1, Os-Rac1,Os-FLS2, OsFLS2, OsCLV2f, CLV2f,OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6,OsSERK1, SERK1, OsBAK1, BAK1, OsSERK1/OsBAK1, OsBISERK1, BISERK1, OsSerk1, OsBAK1-1, 08SG2/OsBAK1, 08SG2, OsSG2
46308	30838015	Chen W., Sheng Z., Cai Y., Li Q., Wei X., Xie L., Jiao G., Shao G., Tang S., Wang J., Hu P.	Rice Morphogenesis and Chlorophyll Accumulation Is Regulated by the Protein Encoded by <i>NRL3</i> and Its Interaction With NAL9.	Front Plant Sci	10	175	2019	VYL	OsClpP6, ClpP6, CLP6, NAL9, NAL9/VYL
46309	20171575	Huang J., Tang D., Shen Y., Qin B., Hong L., You A., Li M., Wang X., Yu H., Gu M., Cheng Z.	Activation of gibberellin 2-oxidase 6 decreases active gibberellin levels and creates a dominant semi-dwarf phenotype in rice (Oryza sativa L.).	J Genet Genomics	37(1)	23-36	2010	GA2OX6	OsGA2ox6
46310	0	Hyun-Su Park, Mun-Sik Shin, Ki-Young Kim, Tae-Hwan Noh, So-Hyeon Baek, Jong-Hee Lee, Ki-Yong Ha, Man-Kee Baek, Woo-Jae Kim, Jong-Ho Park, Jae-Soo Yoo, Young-Chan Cho, Bo-Kyeong Kim	Reaction of Single Resistance Genes and Their Pyramiding Effects in Indica and Japonica Rice Against Xanthomonas oryzae pv. oryzae in Korea	Kor. J. Breed. Sci.	45(2)	119-129	2013	XA3	Xa-3, Xa3 (Xa4b, Xa6, Xa9, Xa w), Xa3, Xaw, Xa6, Xa9, Xa4-b, XA26, Xa26(t), Xa26(t)*, Xa26, RKb, MRKb, MRKB, TRKb, Xa3/Xa26
46311	27250677	Kretzschmar T., Margaret Anne F Pelayo, Kurniawan R Trijatmiko, Lourd Franz M Gabunada, Alam R., Jimenez R., Merlyn S Mendioro, Inez H Slamet-Loedin, Sreenivasulu N., Julia Bailey-Serres, Abdelbagi M Ismail, David J Mackill, Endang M Septiningsih	A trehalose-6-phosphate phosphatase enhances anaerobic germination tolerance in rice.	Nat Plants	1	15124	2015	TPP7	OsTPP7
46312	31136613	Ram H., Kaur A., Gandass N., Singh S., Deshmukh R., Sonah H., Tilak Raj Sharma	Molecular characterization and expression dynamics of MTP genes under various spatio-temporal stages and metal stress conditions in rice.	PLoS ONE	14(5)	e0217360	2019	MTP11.1,MTP8,MTP1,MTP9,MTP5,MTP11,MTP8.1,MTP6,MTP12,MTP7	OsMTP11.1,OsMTP8, MTP8.2, OsMTP8.2,OsMTP1,OsMTP9,OsMTP5,OsMTP11, OsMTP5, MTP5,OsMTP8.1,OsMTP6,OsMTP12,OsMTP7
46313	27251715	Ueno D., Sasaki A., Yamaji N., Miyaji T., Fujii Y., Takemoto Y., Moriyama S., Che J., Moriyama Y., Iwasaki K., Jian Feng Ma	A polarly localized transporter for efficient manganese uptake in rice.	Nat Plants	1	15170	2015	MTP9	OsMTP9
46314	30945026	Luan X., Liu S., Ke S., Dai H., Xin-Ming Xie, Tzung-Fu Hsieh, Xiang-Qian Zhang	Epigenetic modification of ESP, encoding a putative long noncoding RNA, affects panicle architecture in rice.	Rice (N Y)	12(1)	20	2019	ESP	OsESP
46315	30796160	Shi C., Ren Y., Liu L., Wang F., Zhang H., Tian P., Pan T., Wang Y., Jing R., Liu T., Wu F., Lin Q., Lei C., Zhang X., Zhu S., Guo X., Wang J., Zhao Z., Wang J., Zhai H., Cheng Z., Wan J.	Ubiquitin Specific Protease 15 Has an Important Role in Regulating grain width and Size in Rice.	Plant Physiol.	180(1)	381-391	2019	DA1,LG1,GW2	OsDA1, HDR6, OsHDR6,OsLG1, OsUBP15, UBP15, OsUBP15/LG1, OsUBP7-1, UBP7-1,OsGW2, OsRING429, RING429, GNL44, OsGNL44
46316	30885124	Liu J., Cui L., Xie Z., Zhang Z., Liu E., Peng X.	Two NCA1 isoforms interact with CATALASE in a mutually exclusive manner to redundantly regulate its activity in rice.	BMC Plant Biol.	19(1)	105	2019	NCA1A,NOE1,NCA1B	OsCOIN, COIN, OsNCA1a, NCA1a,  OsRING1, RING1,CATC, OsCat, OsCatC, OsCATC, OsNOE1, noe1, catC, OsCATC, CAT3, OsCAT3, LLM9428, OsLLM9428,OsNCA1b, NCA1b,  OsRING2, RING2
46317	31037442	Zhao C., Liu C., Zhang Y., Cui Y., Hu H., Jahan N., Lv Y., Qian Q., Guo L.	A 3-bp deletion of WLS5 gene leads to weak growth and early leaf senescence in rice.	Rice (N Y)	12(1)	26	2019	WLS5	OsWLS5
46318	30918083	He Y., Yan L., Ge C., Xue-Feng Yao, Han X., Wang R., Xiong L., Jiang L., Chun-Ming Liu, Zhao Y.	<i>PINOID</i> Is Required for Formation of the Stigma and Style in Rice.	Plant Physiol.	180(2)	926-936	2019	WAG ,BIF2,AGC21,NPY2 ,PIDB	OsWAG ,bif2, Osbif2, OsBIF2, OsPID, PID, OsAGC25, AGC25,OsPIDL1, PIDL1, OsAGC21,OsNPY2 ,  OsBTBN14, BTBN14,OsPIDb, PIDb
46319	30888525	Kamolsukyeunyong W., Ruengphayak S., Chumwong P., Kusumawati L., Chaichoompu E., Jamboonsri W., Saensuk C., Phoonsiri K., Toojinda T., Vanavichit A.	Identification of spontaneous mutation for broad-spectrum brown planthopper resistance in a large, long-term fast neutron mutagenized rice population.	Rice (N Y)	12(1)	16	2019	_,STPS,RLCK135,LECRK2,VWR,DEFL10,BPH9,_,PT13,LR10,BPH32	OsFbox182, Os_F0223, F-box118,  OsFBX118, FBX118,OsSTPS, OsSTPS2, STPS2, OsEBFS, EBFS, TPS5, OsTPS5,OsRLCK135, OsLecRK3, LecRK3, SDRLK-LecRK3, OsSDRLK-LecRK3,OsLecRK2, LecRK2, SDRLK-LecRK2, OsSDRLK-LecRK2,OsVWR,OsDEFL10, OsDf-10, Df-10, DEF10, OsDEF10,Bph9, BPH9/26, Bph26(t), BPH26, Bph18(t), BPH18,OsFbox183, Fbox183, Os_F0203, F-box119,  OsFBX119, FBX119,OsPT13, PHT1-13, OsPht1;13, ORYsa;PHT1;13,OsLR10,Bph32
46320	30413617	Su Z., Tang Y., Ritchey L.E., Tack D.C., Zhu M., Bevilacqua P.C., Assmann S.M.	Genome-wide RNA structurome reprogramming by acute heat shock globally regulates mRNA abundance.	Proc. Natl. Acad. Sci. U.S.A.	115(48)	12170-12175	2018	HOX16,RSR1,IRO2,IAA14	Oshox16, OsHox16, OsHDZ8, OsHDZIP8, HDZ8, HDZIP8,AP2/EREBP#090, AP2/EREBP90, OsTOE1, TOE1, qHD5, AP2-1, AP2/EREBP/RSR1, OsRSR1, DLN130, DLN130a, DLN130b, OsDLN130, OsDLN130a, OsDLN130b,OsIRO2, OsbHLH056, bHLH056, bHLH56, OsbHLH56,OsIAA14, AUX/IAA14, OsAUX/IAA14 
46321	30446618	Yan X., Akiyama H.	Overestimation of N2O mitigation potential by water management in rice paddy fields.	Proc. Natl. Acad. Sci. U.S.A.	115(48)	E11204-E11205	2018		
46322	30446617	Kritee K., Rudek J., Hamburg S.P., Adhya T.K., Loecke T., Ahuja R.	Reply to Yan and Akiyama: Nitrous oxide emissions from rice and their mitigation potential depend on the nature of intermittent flooding.	Proc. Natl. Acad. Sci. U.S.A.	115(48)	E11206-E11207	2018		
46323	30446614	Wang Q., Li Y., Ishikawa K., Kosami K.I., Uno K., Nagawa S., Tan L., Du J., Shimamoto K., Kawano Y.	Resistance protein Pit interacts with the GEF OsSPK1 to activate OsRac1 and trigger rice immunity.	Proc. Natl. Acad. Sci. U.S.A.	115(49)	E11551-E11560	2018	SPK1,PIT,RAC1,PIA	OsSPK1, OsGEF5, GEF5,Pit, Pit(K59), Pit(Npb), Pi-t, PitNpb, PitK59, Pit1, OsPit1,OsRAC1, OsRac1, Os Rac1, Rac1, Os-Rac1,Pi a, Pia, Pi-a, Pia-1, Pia-2
46324	30464344	Shabek N., Ticchiarelli F., Mao H., Hinds T.R., Leyser O., Zheng N.	Structural plasticity of D3-D14 ubiquitin ligase in strigolactone signalling.	Nature	563(7733)	652-656	2018	D3,D53,D14	d3, dwf3, D3/OsMAX2, Os_F0760, SOL1, OsORE9, ORE9, MAX2, OsRFPH2-10, RFPH2-10, OsD3,  OsFBL27, FBL27,D53(D K3), DK3, Dwf34, SMXL6/7/8, OsD53,d14(d10), dwf13, d10, d14, D88, HTD2, OsHTD2, OsD14, qPPB3, D88/D14, HTD4
46325	30291357	Stein J.C., Yu Y., Copetti D., Zwickl D.J., Zhang L., Zhang C., Chougule K., Gao D., Iwata A., Goicoechea J.L., Wei S., Wang J., Liao Y., Wang M., Jacquemin J., Becker C., Kudrna D., Zhang J., Londono C.E.M., Song X., Lee S., Sanchez P., Zuccolo A., Ammiraju J.S.S., Talag J., Danowitz A., Rivera L.F., Gschwend A.R., Noutsos C., Wu C.C., Kao S.M., Zeng J.W., Wei F.J., Zhao Q., Feng Q., El Baidouri M., Carpentier M.C., Lasserre E., Cooke R., da Rosa Farias D., da Maia LC., Dos Santos RS., Nyberg K.G., McNally K.L., Mauleon R., Alexandrov N., Schmutz J., Flowers D., Fan C., Weigel D., Jena K.K., Wicker T., Chen M., Han B., Henry R., Hsing Y.C., Kurata N., de Oliveira AC., Panaud O., Jackson S.A., Machado C.A., Sanderson M.J., Long M., Ware D., Wing R.A.	Publisher Correction: Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza.	Nat. Genet.	50(11)	1618	2018		
46326	30385630	Lang Z., Gong Z.	A role of <i>OsROS1</i> in aleurone development and nutrient improvement in rice.	Proc. Natl. Acad. Sci. U.S.A.	115(46)	11659-11660	2018	RISBZ1,TA2,RPBF	OsbZIP58, bZIP58, OsEnS-92, OsSMF1, SMF1, OsRISBZ1, RISBZ1/bZIP58,ROS1A, ROS1a, DME1, OsROS1A, OsROS1, ROS1, mOsROS1, ROS1A/DNG702, DNG702, OsDNG702,OsDof3, OsDOF3, OsEnS-34, OsDof10, Dof10, OsDof-10, OsDOF1, DOF1, DOF3, OsRPBF, OsDOF7
46327	30453087	Liu X., Chai J., Ou X., Li M., Liu Z.	Structural Insights into Substrate Selectivity, Catalytic Mechanism, and Redox Regulation of Rice Photosystem II Core Phosphatase.	Mol Plant	12(1)	86-98	2019	PP2C1	OsPP2C01, PP2C01, OsPP2C1, OsPP1, OsPBCP, PBCP 
46328	30456598	Zhang F., Zhang Y.C., Zhang J.P., Yu Y., Zhou Y.F., Feng Y.Z., Yang Y.W., Lei M.Q., He H., Lian J.P., Chen Y.Q.	Rice UCL8, a plantacyanin gene targeted by miR408, regulates fertility by controlling pollen tube germination and growth.	Rice (N Y)	11(1)	60	2018	PKIWI,MIR408,UCL8	OsPKIWI, PKIWI502,miR408, osa-MIR408osa-miR408 osa-miR408-3p osa-miR408-5p, OsMIR408 ,OsUCL8
46329	30465114	Mukherjee S., Sengupta S., Mukherjee A., Basak P., Majumder A.L.	Abiotic stress regulates expression of Galactinol synthase genes post-transcriptionally through intron retention in rice.	Planta	249(3)	891-912	2019	WSI76,GOLS1	wsi76, OsLEA24/OsGolS2, OsGolS2/OsLEA24, OsLEA24, OsGolS2, GolS2, LEA24, OsGolS1, GolS1, OsGOLS2, GOLS2,OsGolS1, GolS1, OsGolS2, GolS2
46330	30441812	Matsuta S., Nishiyama A., Chaya G., Itoh T., Miura K., Iwasaki Y.	Characterization of Heterotrimeric G Protein gamma4 Subunit in Rice.	Int J Mol Sci	19(11)		2018	DEP1	OsDEP1, EP, qPE9-1, DN1, DEP1/DN1/qPE9-1, qNGR9, qDEP1, RGG4/DEP1/DN1/qPE9-1/OsGGC3, RGG4, OsDN1, OsGGC3, GGC3
46331	30456014	Shi F., Yang X., Zeng H., Guo L., Qiu D.	Label-free quantitative proteomic analysis revealed a positive effect of ectopic over-expression of PeaT1 from <i>Alternaria tenuissima</i> on rice (<i>Oryza sativa</i>) response to drought.	3 Biotech	8(11)	480	2018	PP2C10,MSRB1,PSBP,GLYII-2,PHB2,SKIPA,SBP,ALAAT,AL1	OsPP2C10, OsPP18,OsMSRB1, OsMSRB1.1, OsMSRB1.2, MSRB1.1,PsbP, OsPsbP, psbP,OsGLYII2, GLYII2, OsGLYII-2,OsPHB2,OsSKIPa, OsSKIP, SKIP,Os SBP, OsSBP,alaAT, ALT-1, OsAlaAT1, AlaAT1,RPL12-2, rpl12-2, CL12, OsRPL12-2, L12/AL1, OsAL1
46332	30498503	Wang D.H., Song W., Wei S.W., Zheng Y.F., Chen Z.S., Han J.D., Zhang H.T., Luo J.C., Qin Y.M., Xu Z.H., Bai S.N.	Characterization of the Ubiquitin C-Terminal Hydrolase and Ubiquitin-Specific Protease Families in Rice (<i>Oryza sativa</i>).	Front Plant Sci	9	1636	2018	UBP2-3,UCH2,UBP9-2,UCH1,SPO11-5,UBP1-3,UBP4-7,UBP1-8,_,UBP11,UBP12,UBP8,_,UBP1-2,UBP14-3,UBP1-4,UBP1-5,UBP7-7,LMP1,UBP2-1,UBP4-3,UBP7-5,UBP4-1,UBP1-6,UBP6,UBP10,UBP14-2,UCH3,LG1,_,UBP3,UBP4-8,UBP7-2,UBP4-4,_,UBP2-2,UBP4-2,UBP7-3,UBP1-10,UBP5-3,UBP1-7,UBP14-1,UCH4,UBP7-6,UCH5,UCH,FLA,UBP1-1,UBP9-1,UBP4-6	OsUBP2-3, OsUBP3, UBP3,OsUCH2,OsUBP9-2, OsUBP34, UBP34,OsUCH1,OsSPO11-5, OsSPO11-5C, SPO11-1A, SPO11-1B, SPO11-1C, SPO11-1D, OsUBP13, UBP13, OsUBP35, UBP35,OsUBP1-3,OsUBP4-7,OsUBP1-8, OsUBP33, UBP33,OsM5, M5, OsM5a, OsUBP5-2, UBP5-2, OsUBP13, UBP13,OsUBP11, OsUBP26, UBP26,OsUBP12, OsUBP27, UBP27,OsUBP8, OsUBP20, UBP20,OsBIP110, BIP110, OsUBP7-4, UBP7-4, OsUBP28, UBP28,OsUBP1-2, OsUBP30, UBP30,OsUBP14-3,OsUBP1-4, OsUBP2, UBP2,OsUBP1-5, OsUBP31, UBP31,OsUBP7-7, OsUBP16, UBP16,UBP1-9, OsUBP1-9, OsUBP1, UBP1, OsLMP1, RSR1, OsRSR1, OsUBP2, UBP2,OsUBP2-1, OsUBP18, UBP18,OsUBP4-3,OsUBP7-5, OsUBP19, UBP19,OsUBP4-1,OsUBP1-6,OsUBP6, OsUBP14, UBP14, OsUCH14, UCH14,OsUBP10,OsUBP14-2, OsUBP24, UBP24,OsUCH3,OsLG1, OsUBP15, UBP15, OsUBP15/LG1, OsUBP7-1, UBP7-1,OsM2, M2, OsM2a, OsUBP5-1, UBP5-1, OsUBP7, UBP7,OsUBP3, OsUBP6, UBP6,OsUBP4-8, OsUBP8, UBP8,OsUBP7-2, OsUBP23, UBP23,OsUBP4-4, OsUBP9, UBP9,OsM13, M13, OsM13a, OsUBP5-4, UBP5-4, OsUBP12, UBP12,OsUBP2-2, OsUBP4, UBP4,OsUBP4-2, OsUBP10, UBP10,OsUBP7-3, OsUBP25, UBP25,OsUBP1-10,OsUBP5-3, OsUBP21, UBP21,OsUBP1-7, OsUBP32, UBP32,OsUBP14-1,OsUCH4,OsUBP7-6, OsUBP17, UBP17,OsUCH5,OsUCH,UBP4-5, OsUBP4-5, OsUBP5, UBP5, OsFLA,OsUBP1-1, OsUBP29, UBP29,OsUBP9-1, OsUBP22, UBP22,OsUBP4-6, OsUBP11, UBP11
46333	30444888	Moon S.J., Park H.J., Kim T.H., Kang J.W., Lee J.Y., Cho J.H., Lee J.H., Park D.S., Byun M.O., Kim B.G., Shin D.	OsTGA2 confers disease resistance to rice against leaf blight by regulating expression levels of disease related genes via interaction with NH1.	PLoS ONE	13(11)	e0206910	2018	PUB64,_,BZIP3,VQ10,_,ERD1,_,YSL13,NH2,PR1A,_,BZIP28,AP2/EREBP129,NH1,NH3,BZIP8	OsPUB64, OsHOP1, HOP1,  OsPUB64, PUB64,,OsbZIP03, OsbZIP3, OsHBP1b, HBP1b, OsTGA5, TGA5, OsTGA5/OsbZIP3,OsVQ10,,CLPD1, ClpD1, OsERD1, OSClpD, osClpD, OsClpD1, OsClpD1.1, OsClpD1.2, OsClpD1.3, OsClpD1.4 ,,OsYSL13, OsYs12 ,OsNH2, OsNPR2, NPR2, OsNPR2/NH2, DLN21, OsDLN21, PR2, OsNPR1, NPR1,  OsBTBA2, BTBA2, OsNPR3, NPR3,OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1, OsPR1b, PR1alpha, OsPR1alpha,,OsbZIP28, OsbZIP1, OsNIF1, OsTGA3, TGA3, OsTGA3/OsbZIP08,AP2/EREBP#129, OsRAV2, RAV2, OsRAV9/OsTEM1, OsRAV9/OsTEM1, OsRAV9, OsTEM1, RAV9, TEM1,OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2, DLN5, OsDLN5,  OsBTBA1, BTBA1,OsNPR3, OsNH3, NPR3, OsNPR3.1, OsNPR3.2, OsNPR3.3 ,  OsBTBA4, BTBA4, OsNPR4, NPR4,OsbZIP08, OsbZIP8, OsTGA2, TGA2, OsTGA2/OsbZIP28
46334	30486418	Chen Z., Chen T., Sathe A.P., He Y., Zhang X.B., Wu J.L.	Identification of a Novel Semi-Dominant Spotted-Leaf Mutant with Enhanced Resistance to <i>Xanthomonas</i><i>oryzae</i> pv. <i>oryzae</i> in Rice.	Int J Mol Sci	19(12)		2018	MC5,MC4,MC6,_,MC2,PR1A,TIFY11A,_,MC3,JAR1,MC1,CHS,_,CHT4,PR10A,WRKY45,AOS2,SH11,PAD4,PR1B,EDS1,PR4,MC8	OsMC5,OsMC4,OsMC6,SPL24,OsMC2,OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1, OsPR1b, PR1alpha, OsPR1alpha,OsJAZ3, JAZ3, OsJAZ 9, OsJAZ9, Os-JAZ9, JAZ9, OsTIFY11a, OsJAZ6, JAZ6,OsPAL05, PAL05, OsPAL3, PAL5, PAL3, OsPAL2;3, PAL2;3, OsPAL2-1, PAL2-1,OsMC3, OsSTA102,OsJAR1, OsGH3.5, GH3.5, OsGH3-5, GH3-5,OsMC1,CHS*, Oschs, chs, chas, OsCHS, OsCHS1, CHS1, OsPKS26, PKS26, OsCHS24, CHS24, OsCHS27, CHS27,OsPAL07, OsPAL, PAL07, OsPAL6, PAL6, PAL1, OsPAL7, PAL7,Cht4(t)*(Chi4), Chi4, Cht4, OsChia2b, Chi-4, CHIT2, OsCHIT2, PR3, OsPR3,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsWRKY45, OsWRKY45-1, OsWRKY45-2, WRKY45-1, WRKY45-2,OsAOS2, CYP74A2, OsAOS, OsAOS1,OsJAmyb, JAmyb, OsJAMyb, OsMYB21, MYB21, Os2R_MYB91, 2R_MYB91, OgSH11, OsSH11,OsPAD4,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1, OsPR1a, PR1a,OsEDS1,OsPR4, OsPR4a, PR4a, OsPR-4,OsMC8
46335	30478522	Zhou M., Tang W.	MicroRNA156 amplifies transcription factor-associated cold stress tolerance in plant cells.	Mol. Genet. Genomics	294(2)	379-393	2019	CDC20.1,DREB2A,2R_MYB36 ,LEA3-1,CYCB1;1,CAL1,MYB3R2,RAB16A,LCRN1,CYCB2;1,KN	OsWD40-51, OsCDC20.1, WD40-51, CDC20.1, CDC20.2, OsCDC20.2,  OsCDC20-3, CDC20-3, OsCDC20A, CDC20A,OsDREB2A, OsDREB2a, ERF40, OsERF#040, OsERF040, OsERF40, AP2/EREBP#167, AP2/EREBP167,OsMYB2, MYB2, Os2R_MYB36 ,OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3, OsLEA3A, LEA3A,CycB1;1, CycB1;os;1, Orysa;CycB1;1, OsCycB1;1, CyclaZm, CYCIaZm, OsCYCIaZm, OsCYCB1;4,OsCPT1, CPT1, DEFL7, OsDEFL7, OsDf-07, Df-07, OsPR12, PR12, DEF7, OsDEF7, OsAFP1, AFP1, OsPDF2.2, PDF2.2,OsMYB3R-2, OsMYB3R2, OsMSL07, MSL07, MSL7, DLN28, OsDLN28,Rab16A, rab21, RAB21, OsRab21, OsRAB21, OsRAB-21, OsRab16A, OsLEA29, rab16A, OsRAB16A,OsSPL3, SPL3, OsLCRN1,cycB2;1 (=cycOs1), cycB2;1, cycOs1, CycB2;1, CycOs1, CYCB2-1, CYCOS1, CycB2-Os1, CYCB2, CycB2;os;1, Orysa;CycB2;1, CycB2;os;1, OsCycB2;1,OsKN, OsSYP111, SYP111
46336	30339276	Huang X.Y., Liu H., Zhu Y.F., Pinson S.R.M., Lin H.X., Guerinot M.L., Zhao F.J., Salt D.E.	Natural variation in a molybdate transporter controls grain molybdenum concentration in rice.	New Phytol.	221(4)	1983-1997	2019	SULTR5;2	OsSultr5;2, OsSul5;2, Os-MOT1;1, OsMOT1;1, MOT1;1, qGMo8, MOT1
46337	30414306	Wang T., Zou T., He Z., Yuan G., Luo T., Zhu J., Liang Y., Deng Q., Wang S., Zheng A., Liu H., Wang L., Li P., Li S.	GRAIN LENGTH AND AWN 1 negatively regulates grain size in rice.	J Integr Plant Biol			2018	DSG1,WRKY53,GSN1	OsMAPK6, MAPK6, OsMPK6, OsSIPK, SIPK, OsMAPK1, MAPK1, MPK1, OsMPK1, MPK6, OsDSG1,OsWRKY53, WRKY-53,MKP1, OsMKP1, osmkp1, LARGE8, GLA1, OsGLA1
46338	30399648	Wang M., Qiao J., Yu C., Chen H., Sun C., Huang L., Li C., Geisler M., Qian Q., Jiang A., Qi Y.	The auxin influx carrier, OsAUX3, regulates rice root development and responses to aluminium stress.	Plant Cell Environ.	42(4)	1125-1138	2019	CYCD4;1,CYCB2;2,CDKC;1,CYCU4;3,_,CDKC;3,RAU3	CycD2;1, CYCD2-1, Orysa;CycD2;1, OsCYCD2;1, Orysa;CycD4;1, CycD4;1, CYCD4-1, Orysa;CYCD4;1, cycD, OsCYCD4;1,,cycB2;2 (=cycOs2), cycB2;2, cycOs2, CycB2;2, CycOs2, CYCB2-2, CYCOS2, CycB2-Os2, CYCB2, CycB2;os;2, OsCycB2;2, Orysa;CycB2;2, OsCYCOS2, Os;cycB2;2, CYCB2.2, OsCYCB2.2,CDKC;1, Orysa;CDKC;1, Orysa;CDKC;2, CDKC;2, OsCDKC;2, OsCDKC2,CycU4;3, CycU4;os;3, Orysa;CycU4;3, OsCYCP4;1, CyclinD4;1,CKL10, Orysa;CKL10, OsCKL:10, CKL:10,CDKC;3, Orysa;CDKC;3,OsLAX3, OsRAU3, OsAUX2, LAX3, AUX2, OsAUX3, AUX3, ARF2
46339	29936933	Byun M.Y., Cui L.H., Lee H., Kim W.T.	Telomere association of Oryza sativa Telomere repeat-binding factor like 1 and its roles in Telomere maintenance and development in rice, Oryza sativa L.	BMB Rep	51(11)	578-583	2018	TRBF1,TRFL1,RTBP1	OsTRBF1,OsTRFL1,rtbp1, TBP1, OsTBP1
46340	30537605	Kashihara K., Onohata T., Okamoto Y., Uji Y., Mochizuki S., Akimitsu K., Gomi K.	Overexpression of OsNINJA1 negatively affects a part of OsMYC2-mediated abiotic and biotic responses in rice.	J. Plant Physiol.	232	180-187	2019	BHLH9,_,HAC1;1 ,TIFY5,TIFY11C,TIFY11B,_,_,SCI1,_,GNS7,HIPP27,GSTF14,GH9B1,_,LTP2.9,POXGX9,TIFY11E,_,NAC10,TIFY6B,TIFY9,TIFY10B,TIFY10C,TIFY10A,TIFY11A,HYPRP33,EG2,TIFY6A,TIFY11D	OsbHLH009, bHLH009, OsMYC2, MYC2,,OsStr5, STR5, OsHAC1;1,OsJAZ 2, OsJAZ2, JAZ2, OsTIFY5, OsSTA188, OsJAZ5, JAZ5,OsJAZ2, JAZ2, OsJAZ 11, OsJAZ11, Os-JAZ11, JAZ11, OsTIFY11c, OsJAZ1, JAZ1,OsJAZ4, JAZ4, OsJAZ 10, OsJAZ10, JAZ10, OsTIFY11b,prx97, Osprx97,,Sci1, PR6, OsSci1, OsPR6, MGBP1, OsMGBP1,OsNINJA1, NINJA1, OsNINJA2, OsNINJA, NINJA,Gns7, OsGns7,OsHIPP27, OsaHIP27, HIP27 ,OsGSTF14, GST14,OsGH9B1,,OsLTP2.9, OsLtpII.9, LtpII.9,POXgX9, OsPOXgX9, prx112, OsPrx112,OsJAZ 13, OsJAZ13,JAZ13, OsTIFY11e, OsJAZ13a, OsJAZ13b, OsJAZ13c, OsJAZ13d,,ONAC010, ONAC10, OsSTA199, OsNAC3, NAC3,OsJAZ8, JAZ8, OsJAZ 4, OsJAZ4, JAZ4, OsTIFY6b, OsJAZ4-2, JAZ4-2. OsJAZ3, JAZ3,OsJAZ11, OsJAZ5, OsTIFY9, JAZ11, JAZ5, JAZ11/TIFY9 ,OsJAZ6, OsJAZ 7, OsJAZ7, OsTIFY10B, JAZ6, JAZ7,OsJAZ7, JAZ7, OsJAZ 8, OsJAZ8, Os-JAZ8, JAZ8, OsTIFY10c, OsTIFY10c/OsJAZ8,OsJAZ5, JAZ5, JAZ6, OsJAZ6, OsTIFY10A,OsJAZ3, JAZ3, OsJAZ 9, OsJAZ9, Os-JAZ9, JAZ9, OsTIFY11a, OsJAZ6, JAZ6,OsHyPRP33, HyPRP33,OsTIFY3, OsJAZ10, OsJAZ 1, OsJAZ1, JAZ1, EG2/OsJAZ1, EG2, JAZ1/EG2,OsJAZ9, OsJAZ 3, OsJAZ3, JAZ9, JAZ3, OsTIFY6a,OsTIFY11d, OsJAZ1, JAZ1, OsJAZ 12, OsJAZ12, JAZ12
46341	30452736	Wu M., Cai R., Liu H., Li F., Zhao Y., Xiang Y.	A moso bamboo drought-induced 19 protein, PeDi19-4, enhanced drought and salt tolerance in plants via the ABA-dependent signaling pathway.	Plant Cell Physiol.			2018		
46342	30497403	Wei K., Chen H.	Comparative functional genomics analysis of bHLH gene family in rice, maize and wheat.	BMC Plant Biol.	18(1)	309	2018	BHLH168,_,_,BHLH63,_,PIL11,IRO2,ILI5,_,TDR,ILI2,BHLH148,_,PIL14,BHLH144,_,_,_,BHLH185,_,_,BHLH2,_,_,IBH1,_,_,_,_,PIL13,_,_,_,_,_,PIL12,EAT1,_,BHLH182,BHLH9,ICE2,BU1, BHLH120,_,_,_,BHLH6	OsbHLH168, bHLH168,OsbHLH162, bHLH162,OsbHLH180, bHLH180, OsSACL3C, SACL3C,OsIRO3, IRO3, OsbHLH063, bHLH063, bHLH63,OsbHLH113, bHLH113,OsPIL11, OsbHLH102, bHLH102, PIF4, OsPIF4,OsIRO2, OsbHLH056, bHLH056, bHLH56, OsbHLH56,ILI5, OsILI5, PGL2, OsPGL2, Os170, OsBUL1, BUL1, ILI5/PGL2, OsbHLH170, bHLH170,OsbHLH091, bHLH091,tdr, OsbHLH005, bHLH005, OsbHLH5, bhlh5, TDR1, OsTDR, OsTDR1, OsMYC5, MYC5,OsILI2, OsbHLH186, bHLH186, ATAC2/ILI2, ATAC2, OsATAC2,OsbHLH148, bHLH148,OsbHLH109, bHLH109,OsPIL14, OsbHLH104, bHLH104, OsPIF14, PIF14, OsPIF14alpha, OsPIF14beta,OsbHLH144, OsEnS-65, bHLH144, EnS-65, OsZOU-1, OsZOU1, ZOU-1, ZOU1,OsbHLH037, bHLH037,OsbHLH177, bHLH177,OsbHLH160, bHLH160, SIP19, OsSIP19,OsbHLH185, bHLH185,OsbHLH095, bHLH095,OsbHLH157, bHLH157,OsbHLH002, bHLH002, OsbHLH2, bHLH2, OsICE1, ICE1, OsbHLH002/OsICE1,OsbHLH187, bHLH187,OsbHLH035, bHLH035, OsbHLH35, bHLH35, bHLH107,Os IBH1, OsIBH1, OsbHLH175, bHLH175,OsbHLH188, bHLH188,OsbHLH181, bHLH181,OsbHLH183, bHLH183,OsbHLH179, bHLH179,OsPIL1, OsPIL13, OsbHLH152, bHLH152, PIF7, OsPIF7, OsPIF4, PIF4, OsPIF1,OsbHLH171, bHLH171,OsbHLH178, bHLH178,OsbHLH169, bHLH169,OsbHLH047, bHLH047,OsbHLH176, bHLH176,OsPIL12, OsbHLH103, bHLH103,OsEAT1, OsbHLH141, EAT1/DTD1, bHLH141, DTD1, DTD, DLN120, OsDLN120,OsbHLH042, bHLH042,OsbHLH182, bHLH182, OsFIF3, FIF3,OsbHLH009, bHLH009, OsMYC2, MYC2,OsbHLH001, bHLH001, OsbHLH1, bHLH1, OsICE2,ILI4, OsILI4 , OsBU1, BU1/ILI4, OsbHLH172, bHLH172,OsbHLH120, bHLH120,OsbHLH166, bHLH166,OsbHLH147, bHLH147,OsbHLH184, bHLH184,OsbHLH006, bHLH006, OsbHLH6, bHLH6, RERJ1, OsRERJ1, bHLH35
46343	30530203	Pei W., Jain A., Ai H., Liu X., Feng B., Wang X., Sun Y., Xu G., Sun S.	OsSIZ2 regulates nitrogen homeostasis and some of the reproductive traits in rice.	J. Plant Physiol.	232	51-60	2019	HTNE,NAR2.1,NRT2.1,LK3,SIZ2,SIZ1,AMT1;2,AMT1;3,SG1	NRT2.3, OsNRT2.3, OsNRT2;1, OsNRT2.3a, OsNRT2.3b, OsNRT2;3a, OsNRT2.5 ,OsNAR2.1, OsNRT3.1A,OsNRT2.1, OsNRT2.2,lk3(t), lk3(t)*, SG3, GS3, SG3-GS3, OsGW3, OsGS3, RGG3/GS3/Mi/OsGGC1, RGG3, Mi, OsGGC1, GGC1, OsSYL3, SYL3, TT2, OsTT2,OsSIZ2,OsSIZ1, OsSIZ1.1, OsSIZ1.2, OsSIZ1.3, DLN131, OsDLN131, OsPHD23, PHD23,OsAMT1;2, AMT1-2, Osamt1-3, "OsAMT1,3", OsAMT1;3, OsAMT1.3, OsAMT1.2, AMT1.2,OsAMT1;3, AMT1-3, Osamt1-2, "OsAMT1,2", OsAMT1;2, OsAMT1.3, AMT1.2,OsSG1, Sg1
46344	30382816	Xu X., Chen Z., Shi Y.F., Wang H.M., He Y., Shi L., Chen T., Wu J.L., Zhang X.B.	Functional inactivation of OsGCNT induces enhanced disease resistance to Xanthomonas oryzae pv. oryzae in rice.	BMC Plant Biol.	18(1)	264	2018	WRKY45,_,LOX1,WRKY89,NDHA,SALT,POX3006,LHCB1.1,AMTR1,PR1A,PR10A,PAD4,AGA1,RBCL,EDS1,GABA-T,WRKY72,RBCS,LHCA2,WRKY23,ICL,LOX7,PLS3,_,OPR1,_,WRKY42,TIFY11A,PSBA,PETD,PSAA,RCCR1,PAL,HPPD,SL	OsWRKY45, OsWRKY45-1, OsWRKY45-2, WRKY45-1, WRKY45-2,atpA,OsLOX1, OsLOX5,OsWRKY89,ndhA,salT*(sal1), SalT1*, sal1, Sal1, SALT, ML, SalT, OsSalT, OsJRL, JRL, Osl43, OsL43, OsMBL1, MBL1, OsJRL01, JRL01, OsJRL1, JRL1,POX3006, prx114, Osprx114, PO-C1, POC-1, POC1, OsPOC1, Prx14, OsPrx14, POD3006, OsPOD3006,Lhcb1.1 OsLhcb1.1, lhcB,Osh36, OsH36, H36, OsAMTR1,OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1, OsPR1b, PR1alpha, OsPR1alpha,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsPAD4,Osh69, h69, OsAGA1, OsRS6, RS6,rbcL, rbcA, OsrbcL,OsEDS1,Osl2, l2, OsGABA-T,OsWRKY72, WRKY-72,rbcS, OsRbcS, RBCS-C, RbcS2, OsRBCS2, RbcS1, OsRbcS2, OsrbcS1,lhcA, Lhca2, OsLhca2,OsWRKY23,OsEnS-107, EnS-107, OsI85, I85, OsICL, Osl85, l43, Osl43, OsL85,OsLOX7, LOX6, OsLOX6,OsPLS3, SPL21, spl21(t), OsSPL21, OsGCNT, GCNT, OsPSL, PSL, C2GNT1, OsC2GNT1,OsPAL02, PAL02, OsPAL5, PAL5, OsPAL2. PAL2, OsPAL1,OsOPR1, OsOPR2, OsOPR11, OsOPR06-6, OPDAR1, OsOPR, OPDAR,OsPAL04, PAL04, PAL, OsPAL7, PAL7,OsWRKY42, WRKY-42,OsJAZ3, JAZ3, OsJAZ 9, OsJAZ9, Os-JAZ9, JAZ9, OsTIFY11a, OsJAZ6, JAZ6,PsbA, psbA, OsPsbA, PSBD1, OsPSBD1, psbD1,petD, OsPETD,PsaA, psaA, PsAA1, psaA1,OsRCCR1, OsRCCR, RCCR,OsPAL, OsPAL08, PAL2, GP-28, GP28, PAL08, OsPAL2, OsPAL8, PAL8,OsHPPD, Osl30, l30,OsSL, sl (spl1), sl*, sl, spl1, CYP71P1, Os CYP71P1, T5H, OsT5H, CYP71A1, OsCYP71A1, OsLLM1, LLM1, LLM1/OsSL, ELL1, OsELL1, ELL1/SL, OsT5H1
46345	30418086	Yamaguchi K., Yoshimura Y., Nakagawa S., Mezaki H., Yoshimura S., Kawasaki T.	OsDRE2 contributes to chitin-triggered response through its interaction with OsRLCK185.	Biosci. Biotechnol. Biochem.	83(2)	281-290	2019	DRE2A,DRE2B,CERK1,RLCK185	OsDRE2a,OsDRE2b,OsCERK1, OsLysM-RLK9, Os-CERK1, Os-LysM-RLK9, OsLysMRLK9, OsCERK1/OsLYK9, OsLYK9, LYK9,OsRLCK185
46346	30530202	Cheng R., Gong L., Li Z., Liang Y.K.	Rice BIG gene is required for seedling viability.	J. Plant Physiol.	232	39-50	2019	V2,LOX8,OG1,BIG,RBCS,RPOA,RBCL,AOS1,FGL,PSBA,YGL1,PSAA,FTSZ1,CAB1R	v2, mGmk, GMK, Gmk, pt/mtGK, pt/mt GK, OsV2, OsGMK,OsLOX8, OsLOX9, LOX9, OsLOX2;3, LOX2;3, OsLOX2, OsLOX1, CM-LOX8,OsOPR7, OPR7, OsOPR13, OsOPR3, OsOPR5, OsOPR9, OsOPR08-1,  OPR13, OPR3, OPR5, OPR9, OPR08-1, OsOPR8, OPR8,OsBIG,rbcS, OsRbcS, RBCS-C, RbcS2, OsRBCS2, RbcS1, OsRbcS2, OsrbcS1,rope, rpoalpha, Rpoalpha, rope, RpoA ,rbcL, rbcA, OsrbcL,OsAOS, OsAOS1, CYP74A1, OsAOS2, AOS2,fgl(fl), fl, fgl, OsFGL, OsPorB, PoPA, PORA, porA, OsPORA, PORB, OsPORB,PsbA, psbA, OsPsbA, PSBD1, OsPSBD1, psbD1,OsYGL1, CHLG, Ygl1, CS, OsCHLG,PsaA, psaA, PsAA1, psaA1,FtsZ1, FtsZ, OsFtsZ1, OsFtsZ,cab1R, LHCP, CAB, OsLhcb1, Lhcb1, Cab1, OsCAB1, Lhcb1b, OsLhcb1b, CAB2R
46347	30441767	Nishiyama A., Matsuta S., Chaya G., Itoh T., Miura K., Iwasaki Y.	Identification of Heterotrimeric G Protein gamma3 Subunit in Rice Plasma Membrane.	Int J Mol Sci	19(11)		2018	LK3	lk3(t), lk3(t)*, SG3, GS3, SG3-GS3, OsGW3, OsGS3, RGG3/GS3/Mi/OsGGC1, RGG3, Mi, OsGGC1, GGC1, OsSYL3, SYL3, TT2, OsTT2
46348	30496185	Chen S.H., Zhou L.J., Xu P., Xue H.W.	SPOC domain-containing protein Leaf inclination3 interacts with LIP1 to regulate rice leaf inclination through auxin signaling.	PLoS Genet.	14(11)	e1007829	2018	ARF17,LIP1,LC3,IAA12,GH3-2	OsARF17,OsLIP1,OsLC3,OsIAA12,OsGH3-2, OsGH3.2, GH3.2
46349	30542157	Khanday I., Skinner D., Yang B., Mercier R., Sundaresan V.	A male-expressed rice embryogenic trigger redirected for asexual propagation through seeds.	Nature	565(7737)	91-95	2019	PLT3,PLT4,PLT6,PLT5	OsPLT3, AP2/EREBP#018, AP2/EREBP18, BBM2, OsBBM2,OsPLT4, AP2/EREBP#037, AP2/EREBP37, BBM4, OsBBM4,OsPLT6, AP2/EREBP#118, AP2/EREBP118, BBM1, OsBBM1, OsBBML1, BBML1, OsASGR-BBML1, ASGR-BBML1,OsPLT5, AP2/EREBP5, AP2/EREBP#005, BBM3, OsBBM3, BBM1, OsBBM1
46350	30559185		Correction for Kritee et al., Reply to Yan and Akiyama: Nitrous oxide emissions from rice and their mitigation potential depend on the nature of intermittent flooding.	Proc. Natl. Acad. Sci. U.S.A.	115(52)	E12463	2018		
46351	30538156	Zhao T., Ren L., Chen X., Yu H., Liu C., Shen Y., Shi W., Tang D., Du G., Li Y., Ma B., Cheng Z.	The OsRR24/LEPTO1 Type-B Response Regulator is Essential for the Organization of Leptotene Chromosomes in Rice Meiosis.	Plant Cell	30(12)	3024-3037	2018	SDS,TDR,DLC1,AHP1,CYCB1;4,AP37 ,CP1,AHP2,CYCA1;1,EAT1,RADC1	OsSDS, Orysa;SDS,tdr, OsbHLH005, bHLH005, OsbHLH5, bhlh5, TDR1, OsTDR, OsTDR1, OsMYC5, MYC5,RR24, OsRR24, Rrb2, Orr4, OsRR17, RR17, OsRRB2, OsRR24/LEPTO1, OsLEPTO1, LEPTO1, OsDLC1,OHP1, HPt, OsAHP1, Hpt2, Ohp1, OsHP2, HP2, OsHpt2, OsHPt2, OsHP02,OsCycB1;4, Orysa;CycB1;4, CYCB1-3, OsCYCB1-3,OsAP37,OsCP1, Os CP1,OHP2, HPt, OsAHP2 Hpt3, Ohp2, OsHP1, HP1, OsHpt3, OsHP01,CycA1;1, CycA1;os;1, Orysa;CycA1;1, CYCA2.3, OscycA1;1, CYCA1-1, OsCYCA1-1,OsEAT1, OsbHLH141, EAT1/DTD1, bHLH141, DTD1, DTD, DLN120, OsDLN120,OsAP25, Radc1, OsRADC1, AP25
46352	30538152	Ni L., Fu X., Zhang H., Li X., Cai X., Zhang P., Liu L., Wang Q., Sun M., Wang Q.W., Zhang A., Zhang Z., Jiang M.	Abscisic Acid Inhibits Rice Protein Phosphatase PP45 via H2O2 and Relieves Repression of the Ca2+/CaM-Dependent Protein Kinase DMI3.	Plant Cell	31(1)	128-152	2019	DSG1,BIPP2C1,RBOHB,RBOHE,DMI3	OsMAPK6, MAPK6, OsMPK6, OsSIPK, SIPK, OsMAPK1, MAPK1, MPK1, OsMPK1, MPK6, OsDSG1,OsBIPP2C1, OsPP45, PP45,rbohB, OsrbohB, Os rbohB, OsRbohB, OsNox1, Nox1, Os-RbohB, RbohB, OsRboh1, Rboh1,rbohE, OsrbohE, Os rbohE, OsRbohE, OsNox3, Nox3, OsRboh3, Rboh3,OsDMI3, OsCCaMK1, OsCCaMK, OsCCAMK, CCAMK
46353	30590260	Tezuka D., Kawamata A., Kato H., Saburi W., Mori H., Imai R.	The rice ethylene response factor OsERF83 positively regulates disease resistance to Magnaporthe oryzae.	Plant Physiol. Biochem.	135	263-271	2019		
46354	30567970	Chang M.X., Gu M., Xia Y.W., Dai X.L., Dai C.R., Zhang J., Wang S.C., Qu H.Y., Yamaji N., Feng Ma J., Xu G.H.	OsPHT1;3 Mediates Uptake, Translocation, and Remobilization of Phosphate under Extremely Low Phosphate Regimes.	Plant Physiol.	179(2)	656-670	2019	PHR2,PT3,PT2	OsPHR2, Os-PHR2,OsPT3, PHT1-3, OsPht1;3, OjPT1, PHT1;3,OsPT2, PTH1-2, OsPht1;2, PHT1;2, OsPHT1;2
46355	30568669	Cui L.H., Min H.J., Byun M.Y., Oh H.G., Kim W.T.	OsDIRP1, a Putative RING E3 Ligase, Plays an Opposite Role in Drought and Cold Stress Responses as a Negative and Positive Factor, Respectively, in Rice (<i>Oryza sativa</i> L.).	Front Plant Sci	9	1797	2018	DREB1B,MDR7,DREB1D,GAD3,DIRP1,DREB1A	OsDREB1B, ERF31, OsERF031, OsERF#031, OsERF31, AP2/EREBP#169, AP2/EREBP169, OsDREB1b, OsDREB1C, OsCBF1, CBF1,MDR4, OsABCB5, ABCB5, OsPGP5, OsMDR7, OsISC28, MRP4, OsMRP4, OsABCB11, ABCB11, MR7, OsMR7,OsDREB1D, CBF4, ERF116, OsERF#116, OsERF116, AP2/EREBP#054, AP2/EREBP54, OsCbf1, OsCBF1,OsGAD3,OsDIRP1,OsDREB1A, Os DREB1A, CBF3, OsCBF3, OsDREB1A/OsCBF3, ERF24, OsERF24, OsERF024, OsERF#024, AP2/EREBP#114, AP2/EREBP114, OsDREBL
46356	30329110	Yang J., Xie M.Y., Wang L., Yang Z.L., Tian Z.H., Wang Z.Y., Xu J.M., Liu B.H., Deng L.W., Mao C.Z., Lin H.H.	A Phosphate-Starvation Induced RING-Type E3 ligase Maintains Phosphate Homeostasis Partially Through OsSPX2 in Rice.	Plant Cell Physiol.	59(12)	2564-2575	2018	PIE1,PAP21B,PT10,PT3,PHR2,PT2,SPX2	OsRFP, OsPIE1,  OsRING213, RING213,OsPAP21b,OsPT10, PHT1-10, OsPht1;10,OsPT3, PHT1-3, OsPht1;3, OjPT1, PHT1;3,OsPHR2, Os-PHR2,OsPT2, PTH1-2, OsPht1;2, PHT1;2, OsPHT1;2,OsSPX2
46357	30028233	Boonpa K., Tantong S., Weerawanich K., Panpetch P., Pringsulaka O., Roytrakul S., Sirikantaramas S.	In Silico Analyses of Rice Thionin Genes and the Antimicrobial Activity of OsTHION15 Against Phytopathogens.	Phytopathology	109(1)	27-35	2019	THI30,THI41,_,_,THI23,THI1,THI9,THI11,THI38,THI37,THI29,THI33,THI44,THI43,THI12,THI17,THI32,THI36,THI27,THI35,THI25,THI40,THI42,THI26,THI19,THI24,THI18,_,_,THI39,THI6,THI20,THI31,THI28,THI21,THI5,THI3,THI34,THI7,THI22,THI13,THI2,THI10	OsTHI30, OsTHION30, THION30,OsTHI41, OsTHION41, THION41,OsTHI8, THI8, OsTHION8, THION8,OsTHI3, THI3, Osthi1, thi1, OsTHION3, THION3,OsTHI23, OsTHION23, THION23,OsTHI9, THI9, Osthi1, thi1, Osthi8, thi8, OsTHION9, THION9,Osthi9, thi9, OsTHION12, THION12,Osthi11, thi11, OsTHION14, THION14,OsTHI38, OsTHION38, THION38,OsSTA110, OsTHION37, THION37, OsTHI37,OsTHI29, OsTHION29, THION29,OsTHI33, OsTHION33, THION33,OsTHI44, OsTHION44, THION44,OsTHI43, OsTHION43, THION43,Osthi12, thi12, OsTHION15, THION15,OsTHI17, OsTHION17, THION17,OsTHI32, OsTHION32, THION32,OsTHI36, OsTHION36, THION36,OsTHI27, OsTHION27, THION27,OsTHI35, OsTHION35, THION35,OsTHI25, OsTHION25, THION25,OsTHI40, OsTHION40, THION40,OsTHI42, OsTHION42, THION42,OsTHI26, OsTHION26, THION26,OsTHI19, OsTHION19, THION19,OsTHI24, OsTHION24, THION24,OsTHI18, OsTHION18, THION18,OsTHI10, THI10, OsTHION10, THION10,OsTHI11, THI11, OsTHION11, THION11,OsTHI39, OsTHION39, THION39,OsTHI6, Osthi6, thi6, OsTHION6, THION6,OsTHI20, OsTHION20, THION20,OsTHI31, OsTHION31, THION31,OsTHI28, OsTHION28, THION28,OsTHI21, OsTHION21, THION21,OsTHI5, Osthi5, OsTHION5, THION5, OsTHION4, THION4,OsTHI2, THI2, Osthi3, thi3, OsTHION2, THION2,OsTHI34, OsTHION34, THION34,OsTHI7, OsTHION7, THION7,OsTHI22, OsTHION22, THION22,OsTHI13, OsTHION13, THION13,OsTHI1, THI1, Osthi2, thi2, OsTHION1, THION1,Osthi10, thi10, OsTHION16, THION16
46358	30824005	John Lilly J., Subramanian B.	Gene network mediated by WRKY13 to regulate resistance against sheath infecting fungi in rice (Oryza sativa L.).	Plant Sci.	280	269-282	2019		
46359	30733775	Prasetyo F.H.H., Sugiharto B., Ermawati N.	Cloning, transformation and expression of cell cycle-associated protein kinase <i>OsWee1</i> in indica rice (<i>Oryza sativa L.</i>).	J Genet Eng Biotechnol	16(2)	573-579	2018	_	OsWee1, Wee1 
46360	30551584	Nanda S., Wan P.J., Yuan S.Y., Lai F.X., Wang W.X., Fu Q.	Differential Responses of <i>OsMPK</i>s in IR56 Rice to Two BPH Populations of Different Virulence Levels.	Int J Mol Sci	19(12)		2018	MPK6,C4H2,MSRMK2,_,DSG1,AOS1,RLCK136,EDS1,CHS,ERF3,_,ACS2,_,NH1,BWMK1,AOS2,EIN2,MAP3,MPK9,GSTF5,_,MAPK4,WJUMK1,MPK7,LOX1,PAL1,CHI3,RLCK135	OsMPK6, OsDR6, DR6, OsMPK4, MPK4, OsMAPK4, MAPK4,OsC4H, OsC4HL, C4H, OsC4H2,OsMSRMK2, OsMAPK5, OsMAP1, OsMPK3, OsBIMK1, OsMAPK2, MPK5, BIMK1, MAPK2, MAPK5, MPK3, OsMPK5, OsMAPK3, OsMAPK5b, MAPK3,OsMPK13, OsMAPK2, OsBIMK2, BIMK2, MPK13, MAPK2, OsMAPK17-2, MAPK17-2,OsMAPK6, MAPK6, OsMPK6, OsSIPK, SIPK, OsMAPK1, MAPK1, MPK1, OsMPK1, MPK6, OsDSG1,OsAOS, OsAOS1, CYP74A1, OsAOS2, AOS2,OsRLCK136, OsLecRK4, LecRK4, SDRLK-LecRK4, OsSDRLK-LecRK4,OsEDS1,CHS*, Oschs, chs, chas, OsCHS, OsCHS1, CHS1, OsPKS26, PKS26, OsCHS24, CHS24, OsCHS27, CHS27,Os02ERF, OsSHN1, OsWR1, WR1, OsERF#003, OsERF003, OsERF3, AP2/EREBP#012, AP2/EREBP12,OsMPK14, MPK14,OsACS2, Os-ACS2,OsMPK16, MPK16,OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2, DLN5, OsDLN5,  OsBTBA1, BTBA1,OsBWMK1, MPK12, MAPK1, OsMAPK1, OsMPK12, OsMPK17-1, MPK17-1, OsBWMK1L, OsBWMK1M, OsBWMK1S, OsMAPK17-1, MAPK17-1, MAPK12, OsMAPK12,OsAOS2, CYP74A2, OsAOS, OsAOS1,OsEIN2, MHZ7/OsEIN2, OsEIN2/MHZ7, MHZ7 ,OsMAPK33, OsMPK14, OsMAPK2, OsMAP3, OsMAPK14, OsMPK3, MAPK33, MPK14, MAPK2, MAPK14, MPK3, OsMAPK3, MAPK3,OsMPK9,OsGSTF5, OsGST F5,SOD, OsSOD-Cu/Zn, SOD-Cu/Zn, OsaCCS, OsCCS, CCS,OsMAPK4, OsMAP2, OsMSRMK3, OsMPK4, OsMPK7, MAP2, MSRMK3, MPK4, MPK7, MAPK7, OsMAPK7,OsMPK20-4, MPK20-4, OsWJUMK, OsWJUMK1, WJUMK, MAPK8, OsMPK8, MPK8, OsMAPK20-4, MAPK20-4, OsMPKG1, MPKG1,OsMPK7, OsMAPK44, MAPK44, OsMAPK20-5, MAPK20-5,OsLOX1, OsLOX5, OsLOX2, LOX2,OsPAL, Pal1*, Pal1, PAL, Pal_1, PalI, PAL2, OsPAL01, PAL01, OSPAL, CP-1, GP-1, OsPAL1, PAL3, OsPAL3,gh1, GH1, OsGH1, OsCHI, Cfi, CHI, OsCHI3,OsRLCK135, OsLecRK3, LecRK3, SDRLK-LecRK3, OsSDRLK-LecRK3
46361	30545904	Moon S., Cho L.H., Kim Y.J., Gho Y.S., Jeong H.Y., Hong W.J., Lee C., Park H., Jwa N.S., Dangol S., Chen Y., Park H., Cho H.S., An G., Jung K.H.	RSL Class II Transcription Factors Guide the Nuclear Localization of RHL1 to Regulate root hair Development.	Plant Physiol.	179(2)	558-568	2019	_,_,RHL1,_,_,UO,_,_,_,_,_,_,_	,,OsbHLH115, bHLH115, OsRHL1,prx43, OsPRX43,OsbHLH130, bHLH130, OsRSL9, RSL9, DLN264, OsDLN264,OsUO,OsbHLH132, bHLH132, OsRSL7, RSL7,OsbHLH131, bHLH131, OsRSL5, RSL5, DLN93, OsDLN93,OsbHLH134, bHLH134, DLN100, OsDLN100,prx105, OsPRX105,prx95, OsPRX95,OsbHLH129, bHLH129, OsRSL4, RSL4, DLN79, OsDLN79,OsbHLH128, bHLH128, OsRSL6, RSL6, DLN190, OsDLN190
46362	30194869	Tanaka N., Uraguchi S., Kajikawa M., Saito A., Ohmori Y., Fujiwara T.	A rice PHD-finger protein OsTITANIA, is a growth regulator that functions through elevating expression of transporter genes for multiple metals.	Plant J.	96(5)	997-1006	2018	ZIP1,_,IRT1,LC5,IRT2,NRAMP1,LCD1	OsZIP1,OsZIP9, ZIP9,OsIRT1, ZIP10, OsZIP10, OsZIP12, ZIP12,OsLC5, OsTTA, TTA,OsIRT2, OsIRT1, OsZIP15, ZIP15,OsNramp1, OsNRAMP1, OsNramp6,NRAMP5, OsNRAMP5, OsNramp5, OsLCD1
46363	30471121	Liu X., Wang J., Yu Y., Kong L., Liu Y., Liu Z., Li H., Wei P., Liu M., Zhou H., Bu Q., Fang J.	Identification and characterization of the rice pre-harvest sprouting mutants involved in molybdenum cofactor biosynthesis.	New Phytol.	222(1)	275-285	2019	_,_,CNX1,CNX6,AO2,XDH1,_,AO1	OsNR1, NR1, nia1, OsNIA1, NIA1, OsNIA2, NIA2,OsMCP, MCP, OsSO1, SO1,OsCNX1,OsCNX6,AO, OsAO2,OsXDH1, OsSAC3, SAC3,OsNIA2, NIA2, OsNR2, NR2, OsNR3, NR3, OsNR1.2, NR1.2,AAO3, OsAAO3, OsAO1, AAO2, OsAAO2
46364	30541427	Rosa M.T.G., Almeida D.M., Pires I.S., da Rosa Farias D., Martins A.G., da Maia LC., de Oliveira AC., Saibo N.J.M., Oliveira M.M., Abreu I.A.	Insights into the transcriptional and post-transcriptional regulation of the rice SUMOylation machinery and into the role of two rice SUMO proteases.	BMC Plant Biol.	18(1)	349	2018	ELS2,_,SCE2,FUG1,SPF1,OTS3,SAE2,SUMO1,ELS1,SUMO2,SIZ2,SAE1,SIZ1,SUMO3,UBC3,HPY2	OsELS2,OsSce1, OsUBC1, UBC1, OsSCE1b, SCE1b, OsSCE1b.1, OsSCE1b.2,OsSce2, Sce2, OsUBC2, UBC2, OsSCE1a, SCE1a, OsSCE1a.1, OsSCE1a.2,OsFUG1,OsSPF1, OsSPF1.1, OsSPF1.2,OsOTS3,OsSAE2, OsSAE2.1, OsSAE2.2, OsSAE2.3,smt3, SMT3, OsSUMO1,OsELS1,OsSUMO2,OsSIZ2,OsSAE1, OsSAE1.1, OsSAE1.2, OsSAE1.3,OsSIZ1, OsSIZ1.1, OsSIZ1.2, OsSIZ1.3, DLN131, OsDLN131, OsPHD23, PHD23,OsSUMO3,OsUBC3, OsSCE1c, SCE1c, OsSCE1c.1, OsSCE1c.2, OsSCE3, SCE3,OsHPY2, OsHPY2.1, OsHPY2.2
46365	30619427	Um T.Y., Lee H.Y., Lee S., Chang S.H., Chung P.J., Oh K.B., Kim J.K., Jang G., Choi Y.D.	JASMONATE ZIM-DOMAIN PROTEIN 9 Interacts With Slender Rice 1 to Mediate the Antagonistic Interaction Between Jasmonic and Gibberellic Acid Signals in Rice.	Front Plant Sci	9	1866	2018	DREB1A,TIFY6B,DREB1G,BHLH148,SLRL2,SLRL1,PIL14,TIFY6A,DREB1B	OsDREB1A, Os DREB1A, CBF3, OsCBF3, OsDREB1A/OsCBF3, ERF24, OsERF24, OsERF024, OsERF#024, AP2/EREBP#114, AP2/EREBP114, OsDREBL,OsJAZ8, JAZ8, OsJAZ 4, OsJAZ4, JAZ4, OsTIFY6b, OsJAZ4-2, JAZ4-2. OsJAZ3, JAZ3,OsDREB1G, OsERF025, OsERF#025, OsERF25, ERF25, AP2/EREBP#138, AP2/EREBP138, OsDREB1I,OsbHLH148, bHLH148,OsSLRL2, OsGRAS-30, OsGRAS30, GRAS-30, GRAS30,OsSLRL1, OsGAI, OsSLRL, OsGRAS-1, OsGRAS1, GAI, SLRL, GRAS-1, GRAS1,OsPIL14, OsbHLH104, bHLH104, OsPIF14, PIF14, OsPIF14alpha, OsPIF14beta,OsJAZ9, OsJAZ 3, OsJAZ3, JAZ9, JAZ3, OsTIFY6a,OsDREB1B, ERF31, OsERF031, OsERF#031, OsERF31, AP2/EREBP#169, AP2/EREBP169, OsDREB1b, OsDREB1C, OsCBF1, CBF1
46366	30390051	Song S., Chen Y., Liu L., See Y.H.B., Mao C., Gan Y., Yu H.	Author Correction: OsFTIP7 determines auxin-mediated anther dehiscence in rice.	Nat Plants	4(12)	1124	2018		
46367	30578468	Ohashi M., Ishiyama K., Kusano M., Fukushima A., Kojima S., Hayakawa T., Yamaya T.	Reduction in sucrose contents by downregulation of fructose-1,6-bisphosphatase 2 causes tiller outgrowth cessation in rice mutants lacking glutamine synthetase1;2.	Rice (N Y)	11(1)	65	2018	GLN1;2,CFBP2	OsGLN1;2, GSr, RGS8, OsGS1;2, GS1;2, GS1, OsGS1-2, GS1-2, OsGS1.2, GS1.2,OscFBP2, cFBP2
46368	30558382	Tong X., Wang Y., Sun A., Bello B.K., Ni S., Zhang J.	<b>Notched Belly Grain 4, a Novel Allele of Dwarf 11, Regulates grain shape and Seed Germination in Rice (Oryza sativa L.)</b>.	Int J Mol Sci	19(12)		2018	BRD1,D11,YUCCA1,SPED1,_	brd1, OsDWARF, DWARF, OsBR6ox, BR6ox, CYP85A1, CYP85A4, OsDWF, CYP85A1/OsDWARF, OsBRD1, OsCYP85A1,d11(d8), dwf10, d8, D11/CYP724B1, d11, CYP724B1, GNS4, OsD11, PMM1, OsPMM1, PMM1/D11, NBG4, OsCPB1, CPB1, CPB1/D11,OsYUCCA1, OsYUC1, YUC1,OsSPED1, PLS22, OsPLS22,OsRab11F1, OsPRA2, PRA2, OsPra2 
46369	30375064	Takeda Y., Suzuki S., Tobimatsu Y., Osakabe K., Osakabe Y., Ragamustari S.K., Sakamoto M., Umezawa T.	Lignin characterization of rice coniferaldehyde 5-hydroxylase loss-of-function mutants generated with the CRISPR/Cas9 system.	Plant J.	97(3)	543-554	2019	_	OsF5H1, F5H1, OsCAld5H1, CAld5H1, CYP84A5, OsCYP84A5
46370	30545137	Sun L., Xiang X., Yang Z., Yu P., Wen X., Wang H., Abbas A., Muhammad Khan R., Zhang Y., Cheng S., Cao L.	<i>OsGPAT3</i> Plays a Critical Role in anther wall Programmed Cell Death and pollen Development in Rice.	Int J Mol Sci	19(12)		2018	DPW2,MADS24,_,GPAT3,GAMYB,EAT1,TDR,ACS9,CYP704B2,MS2,RADC1,ABCG15,AP37 ,CYP703A3,BHLH142,C6,NP1 ,RAG,_,CP1,MSP1,MTR1,WDA1,PSBS1,BZIP74,DEX1	OsDPW2,OsMADS24, MADS8, OsMADS8, OsMADS8/24 ,GPAT, OsGPAT,OsGPAT3,OsGAMYB, GAM1, OsGAMyb, Os-MYBGA, Os GAMYB, OsMYBGA, MYBGA, Os2R_MYB15, 2R_MYB15 ,OsEAT1, OsbHLH141, EAT1/DTD1, bHLH141, DTD1, DTD, DLN120, OsDLN120,tdr, OsbHLH005, bHLH005, OsbHLH5, bhlh5, TDR1, OsTDR, OsTDR1, OsMYC5, MYC5,OsACS9, 4CL4, OsACOS12, ACOS12 ,OsCYP704B2,OsMS2, OsDPW, DPW, DPW1, OsDPW1, OsFAR2, FAR2,OsAP25, Radc1, OsRADC1, AP25,OsABCG15, PDA, PDA1, OsABCG15/PDA1,OsAP37,OsCYP703A3,OsbHLH142, bHLH142, TIP2, OsTIP2, TIP2/TDR/bHLH142,Osc6, Osg6B, OsG6B, OsLTPG25, OsLTPg25, OsLtpVII.1, Os C6,OS-ACE, OsNP1, OsTMS18, TMS18,MADS3, OsMADS3, OsMADS3(t), RMADS222, RAG1, rf3,GPAT, OsGPAT,OsCP1, Os CP1,Msp1, OsMSP1, OsTMS15, TMS15,OsMTR1,OsWDA1, Wda1, wda1, OS-CER1, OsGL1-5,OsPsbS1, PsbS1, psbS, OsPSBS,OsbZIP74, OsTGA10, TGA10 ,Os DEX1, OsDEX1
46371	30565430	Zhang Z., Zhao H., Li W., Wu J., Zhou Z., Zhou F., Chen H., Lin Y.	Genome-wide association study of callus induction variation to explore the callus formation mechanism of rice.	J Integr Plant Biol			2018	_,IAA10,PLT5,CRL1	,OsIAA10, OsIAA5, DLN71, OsDLN71,OsPLT5, AP2/EREBP5, AP2/EREBP#005, BBM3, OsBBM3, BBM1, OsBBM1,crl1, crl1*, ARL1, ARL1/CRL1, OsLBD3-2, LBD3-2, OsCRL1
46372	30124364	Zhang D., Tian C., Yin K., Wang W., Qiu J.L.	Postinvasive Bacterial Resistance Conferred by Open Stomata in Rice.	Mol. Plant Microbe Interact.	32(2)	255-266	2019	ABA8OX1,ES1,ABA2,ABA3,ABA1	OsABA8OX1, CYP707A5, OsCYP707A5, ABA8ox1, OsABA8ox1, OsABA8'OH1, ABA8'OH1 ,TUT1, OsSCAR1, SCAR1, TUT1/OsSCAR1, OsSCAR2, SCAR2,OsABA2, OsSDR, SDR,OsABA3, OsMoCo, MoCo,OsABA1, Zep1, OsAba1, Aba2, OsAba2, OsZep1, Zep, OsZep, Aba1, OsABA2, Osaba1, OsZEP-1, OsZEP, OSZEP1, ZEP1, ZEP
46373	30578854	Ma S., Tang N., Li X., Xie Y., Xiang D., Fu J., Shen J., Yang J., Tu H., Li X., Hu H., Xiong L.	Reversible Histone H2B Monoubiquitination Fine-Tunes Abscisic Acid Signaling and Drought Response in Rice.	Mol Plant	12(2)	263-277	2019		
46374	30518322	Yuenyong W., Chinpongpanich A., Comai L., Chadchawan S., Buaboocha T.	Downstream components of the calmodulin signaling pathway in the rice salt stress response revealed by transcriptome profiling and target identification.	BMC Plant Biol.	18(1)	335	2018	CAM1-1,ICL,PRR95,WRKY53,_,_,AGPS2,_,LAC8,LAC7,KCS2,BIDK1,PPI-PFK,LAC29,BURP16,WRKY13,WRKY62,NIN6,MS,RSUS4,FAE1,NCED3,OPR1,LOX1,_,LOX12,SSIVA,HCT2,ITPK4,BWMK1,KCS4,_,ACX4,FAR4,WRKY71,MYB48,FAR1,CNGC12,_,ITPK1,_,_,SSIIB,IDH,NIN2,HPPD,CAMTA4,_,USP30,_,_,GPT2,_,OPR10,OPR5,AO3,_,_,MS2,DREB1A,CIN1,_,DREB1B	OsCaM1, OsCam1-1, OsCaM1-1, CAM3, Cam1-1, OsCAM1.1, CAM1.1,OsEnS-107, EnS-107, OsI85, I85, OsICL, Osl85, l43, Osl43, OsL85,OsPRR95, Os-PRR95, Prr2, OsPRR2, OsCCT33,OsWRKY53, WRKY-53,DIP3, XIP, OsHI-XIP, OsXIP2, XIP2,OsACO1, ACO1, OsACO2, ACO2,OsAGPS2a, AGPS2A, AGPS2B, OsAGPS2, osagps2, APS2, APS2a, APS2b, AGPS2a, APGS2b, OsAGPS2b, AGPP, GAS8, OsAPS2, OsAPS2a, OsAPS2b,BIP134, OsBIP134,OsLAC8, OsLAC7, LAC7,OsLAC7,KCS, OsKCS2,OsBIDK1, OsDGK1, DGK1,OsPPi-PFK, OsPFK04, PFK04, PFK4,OsLAC29,OsRD22, RD22, OsBURP16,OsWRKY13,OsWRKY62, OsWRKY62.1, OsWRKY62.2, XB10, OsWRKY62-1, OsWRKY62-2,OsNIN6, INV6, OsINV6,MLS, OsMLS, OsMS, OsMST, MST,SUS4, SS4, OsScS4, RSs4, RSus4, OsSUS4,OsCHS, FAE, OsFAE1, OsKCS14, KCS14,OSNCED3, OsNCED-3, OsNCED3, OsNCED3a, NCED3a, OsNCED4, NCED4, OsNECD2, OsNCED2b, NCED2b ,OsOPR1, OsOPR2, OsOPR11, OsOPR06-6, OPDAR1, OsOPR, OPDAR,OsLOX1, OsLOX5,OsPGL35, PGL35,OsLOX12,OsSSIVa, SSIV-1, OsSSIV-1,OsHCT2, HCT,OsITPK4, OsITP5/6K-4, ITP5/6K-4,OsBWMK1, MPK12, MAPK1, OsMAPK1, OsMPK12, OsMPK17-1, MPK17-1, OsBWMK1L, OsBWMK1M, OsBWMK1S, OsMAPK17-1, MAPK17-1, MAPK12, OsMAPK12,KCS, OsKCS4,,OsACX4, OsACOX1, ACOX1,OsFAR4,OsWRKY71, WRKY-71,OsMYB48, OsMYB48-1, OsMYB48-2, OsMYB59, MYB59, Os2R_MYB19, 2R_MYB19 ,OsFAR1,OsCNGC12, OsCNGC2, CNGC2 ,,OsITPK1, OsITP5/6K-1, ITP5/6K-1, OsITL2,GDCi, OsGDCi, OsGAD, GAD, OsGAD4, GAD4,,OsSSIIb, OsSSII-2, SSII-2, SS2, OsSSSIIb, SS2b,OsIDH,OsNIN2, CytINV, OsCytINV,OsHPPD, Osl30, l30,OsCAMTA4, OsCAMTA6, CAMTA6,,OsUSP, USP, OsUSP30, OsUSP4, USP4,OsDAD1;3, DAD1;3,OsKCBP, KCBP,OsGPT2,,OsOPR10, OsOPR12, OsOPR01-1,OsOPR5, OsOPR6, OsOPR06-2, OPR4,AO, OsAO, AAO, OsAAO, OsAO3, OsAAO1, AAO1,Lox2:Os:1, OsLOX9, LOX9, OsLOX8, LOX8, OsLOX2, LOX2, OsRLL, OsHI-LOX, HI-LOX, RLL2 LOX, RLL2, Lox2osPil, OsLOX2;1, LOX2;1, OsLOX1, OsLOX7, LOX7,,OsMS2, OsDPW, DPW, DPW1, OsDPW1, OsFAR2, FAR2,OsDREB1A, Os DREB1A, CBF3, OsCBF3, OsDREB1A/OsCBF3, ERF24, OsERF24, OsERF024, OsERF#024, AP2/EREBP#114, AP2/EREBP114, OsDREBL,OSCIN1, OsCIN1,FBP,OsDREB1B, ERF31, OsERF031, OsERF#031, OsERF31, AP2/EREBP#169, AP2/EREBP169, OsDREB1b, OsDREB1C, OsCBF1, CBF1
46375	30619400	Kim S.R., Torollo G., Yoon M.R., Kwak J., Lee C.K., Prahalada G.D., Choi I.R., Yeo U.S., Jeong O.Y., Jena K.K., Lee J.S.	Loss-of-Function Alleles of <i>Heading date 1</i> (<i>Hd1</i>) Are Associated With Adaptation of Temperate <i>Japonica</i> Rice Plants to the Tropical Region.	Front Plant Sci	9	1827	2018	RFT1,HD5,EF1,HD2,MADS51,GHD7,HD3A,SE1	FT-L 3, OsFTL3, FTL3, FT-L3, RFT, OsRFT1,Hd5(t)*, Hd5, qHD5, HAP3H, OsHAP3H, NF-YB, CBF-A, DTH8 , qHD5(t)*, Ghd8, Ghd8/DTH8, Lhd1, NF-YB11, OsNF-YB11, NFYB11, LH8, DTH8/Ghd8, RH8, DTH8/Ghd8/LHD1, CAR8, DTH8/Ghd8/ OsHAP3H, EF8, OsEF8,Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,Hd2(t), Hd2, qHD2(t), OsPRR37, Os-PRR37, PRR37, Prr4, OsPRR4, DTH7, Os DTH7, OsCCT28, CCT28, Ghd7.1, PRR37/Hd2, EH7-2, EH7-2/Hd2, Hd2/PRR37, PRR37-1a, PRR37-1b, PRR37-1c, PRR37-2a, PRR37- 2, HD7.2,OsMADS51, OsMADS65, MADS65, qHd1, DLN36, OsDLN36,Ghd2, Ghd7, OsGhd7, OsCCT26, OsCMF8, OsI, Ghd7/Hd4, Hd4, EH7-1/Hd4, Ghd7-0a, EH7-1, EH7/Ghd7, EH7, OsEH7, GLW7.1, OsGLW7.1,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, OsHd1,  Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21
46376	30536744	Fang C., Li K., Wu Y., Wang D., Zhou J., Liu X., Li Y., Jin C., Liu X., Mur L.A.J., Luo J.	OsTSD2-mediated cell wall modification affects ion homeostasis and salt tolerance.	Plant Cell Environ.	42(5)	1503-1512	2019	SOS1,NHX1,HAK10,SKC1,TSD2 ,KAT1,HKT4,HKT1	OsSOS1, OsNHA1, NHA1, SOS1/NHX7, NHX7, OsNHX7,OsNHX1, OcNHX1, OgNHX1, OrNHX1, OpNHX1, ObNHX1,OsHAK10,OsHKT8, HKT8, Os-HKT1;5, OsHKT1;5, HKT1;5, SKC1, qSKC-1(t), OsSKC1,OsTSD2, OsQUA2, QUA2 ,OsKAT1, OsKAT3,OsHKT4, OsHKT1;1, HKT1;1, OsHKT2, RNC4, OsHKT1;1-FL, OsHKT1;1-V1, OsHKT1;1-V2, OsHKT1;1-V3, OsHKT1;1-V4, OsHKT1;1-V5, OsHKT1;1-V6, OsHKT1;1-V7, OsHKT1;1-V8,OsHKT1, OsHKT2;1, HKT2;1, Ni (Nipponbare)-OsHKT1, Po (Pokkali)-HKT1, OsHKT1;1, HKT1;1
46377	30544581	Boonchai C., Udomchalothorn T., Sripinyowanich S., Comai L., Buaboocha T., Chadchawan S.	Rice Overexpressing <i>OsNUC1-S</i> Reveals Differential Gene Expression Leading to Yield Loss Reduction after Salt Stress at the Booting Stage.	Int J Mol Sci	19(12)		2018	NUC1,PSAO,LHCB2.1,CEST	OsNUC1, OsNUC1-S, OsNUC1-L,OsPSAO, PsaO,LHCB, LHCP II, Lhcb2, OsLhcb2, Lhcb2.1, OsLhcb2.1 ,OsCEST, OsY3IP1, Y3IP1
46378	30572766	Sakamoto T., Kitano H., Fujioka S.	ERECT LEAF1 suppresses jasmonic acid response in rice by decreasing OsWRKY4 stability.	Plant Signal Behav	14(2)	1559578	2019		
46379	30696765	Acevedo L.A., Kwon J., Nicholson L.K.	Quantification of reaction cycle parameters for an essential molecular switch in an auxin-responsive transcription circuit in rice.	Proc. Natl. Acad. Sci. U.S.A.	116(7)	2589-2594	2019	IAA11,LRT2	OsIAA11,CYC2, cyc2*, cyc2, OsCYP2, Cyp2, OsCYP19-2, CYP19-2, OsCYP-2, OsCyp2-P, OsCyp2, OsCYP19-1, LRT2/OsCYP2, lrt2*, lrt2, Ppcti 
46380	30670638	Wassmann R., Sander B.O., Yadav S., Bouman B., Singleton G., Stuart A., Hellin J., Johnson D., Hughes J., Butterbach-Bahl K., Kiese R., Kraus D., Janz B., Linquist B., Gaihre Y.K., Chirinda N., Wollenberg E.	New records of very high nitrous oxide fluxes from rice cannot be generalized for water management and climate impacts.	Proc. Natl. Acad. Sci. U.S.A.	116(5)	1464-1465	2019		
46381	30606778	Caseys C.	Ferroptosis: A Companion of ROS in Fighting <i>Magnaporthe</i> in Rice.	Plant Cell	31(1)	13-14	2019		
46382	30705136	Marand A.P., Zhao H., Zhang W., Zeng Z., Fang C., Jiang J.	Historical Meiotic Crossover Hotspots Fueled Patterns of Evolutionary Divergence in Rice.	Plant Cell	31(3)	645-662	2019		
46383	30610168	Yang C., Yu Y., Huang J., Meng F., Pang J., Zhao Q., Islam M.A., Xu N., Tian Y., Liu J.	Binding of the <i>Magnaporthe oryzae</i> Chitinase MoChia1 by a Rice Tetratricopeptide Repeat Protein Allows Free Chitin to Trigger Immune Responses.	Plant Cell	31(1)	172-188	2019	JIOSPR10,RBOHA,TPR1	JIOsPR10, OsPR10, PR10, OsJiPR10, JiPR10, OsPR10c, PR10c,rbohA, OsrbohA, Os rbohA, OsRbohA, OsNox2, Nox2, OsRboh2, Rboh2,OsTPR1
46384	30626621	Jiang L., Ma X., Zhao S., Tang Y., Liu F., Gu P., Fu Y., Zhu Z., Cai H., Sun C., Tan L.	The APETALA2-like transcription factor SUPERNUMERARY BRACT Controls Rice Seed Shattering and Seed Size.	Plant Cell	31(1)	17-36	2019	SNB,SH5,QSH1	AP2/EREBP#073, AP2/EREBP73, AP2-3, OsAP2-3, SSH1, OsSSH1, OsSNB, DLN181, DLN181a, DLN181b, OsDLN181, OsDLN181a, OsDLN181b, SUI4, OsSUI4, SUI4/SNB,OsSH5, RI, SH5/RI, OsRI, VPB1, OsVPB1,qSH1, qsh1, qSH-1, RIL1, OsRIL1 
46385	30651345	Liu J., Nannas N.J., Fu F.F., Shi J., Aspinwall B., Parrott W.A., Dawe R.K.	Genome-Scale Sequence Disruption Following Biolistic Transformation in Rice and Maize.	Plant Cell	31(2)	368-383	2019		
46386	30312463	Sousa R.H.V., Carvalho F.E.L., Lima-Melo Y., Alencar VTCB., Daloso D.M., Margis-Pinheiro M., Komatsu S., Silveira J.A.G.	Impairment of peroxisomal APX and CAT activities increases protection of photosynthesis under oxidative stress.	J. Exp. Bot.	70(2)	627-639	2019	SHMT1,GS2,LFNR1,ABC1,APX4,GDCP	OsSHM1, SHM1, OsSHMT1, CDM1, OsCDM1, OsSHTM3, SHTM3, OsSHMT, SHMT,OsGS2, GLN2, OsGLN2, RGS31, OsRGS31,OsLFNR1, LFNR2, Os-LFNR2, OsLFNR2, FNR, PetH-2,OsABC1, SPL32, OsSPL32, OsGLU, OsFd-GOGAT, Fd-GOGAT, ABC1/ OsFd-GOGAT ,OsAPx4, OsAPx04, OSAPX4, APx4, pAPX4,OsGDCP
46387	30582769	Ruan B., Hua Z., Zhao J., Zhang B., Ren D., Liu C., Yang S., Zhang A., Jiang H., Yu H., Hu J., Zhu L., Chen G., Shen L., Dong G., Zhang G., Zeng D., Guo L., Qian Q., Gao Z.	OsACL-A2 negatively regulates cell death and disease resistance in rice.	Plant Biotechnol. J.	17(7)	1344-1356	2019	PR1A,KAT1,ACLA3,PR10A,SGR,WRKY23,SL,PR1B,EDT1,ACLA2	OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1, OsPR1b, PR1alpha, OsPR1alpha,OsI57, I57, OsKAT1, OsACAA1, ACAA1,OsACL-A3, ACL-A3,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,sgr(t), sgr, OsSGR, OsSgr, SGR1, OsSGR1,OsWRKY23,OsSL, sl (spl1), sl*, sl, spl1, CYP71P1, Os CYP71P1, T5H, OsT5H, CYP71A1, OsCYP71A1, OsLLM1, LLM1, LLM1/OsSL, ELL1, OsELL1, ELL1/SL, OsT5H1,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1, OsPR1a, PR1a,OsACL-A1, ACL-A1, ACLA1, OsEDT1, ACLA-2, OsACLA-2,SPL30, OsSPL30, OsACL-A2, ACL-A2
46388	30763346	Das A., Pramanik K., Sharma R., Gantait S., Banerjee J.	In-silico study of biotic and abiotic stress-related transcription factor binding sites in the promoter regions of rice germin-like protein genes.	PLoS ONE	14(2)	e0211887	2019	GLP2-3,GLP9-2,GER3,GLP9-1,GER1,GLP9-3,GLP2-2,GLP8-8,GLP8-12,GLP5-2,GLP2-4,GLP3-1,GLP8-9,OXO1,OXO2,GLP1-5,GLP3-2,GLP8-1,GER6,GLP2-1,GLP12-3,GLP3-8,GLP12-4,GLP8-5,GLP4-1,GLP12-1,GLP8-6,GLP12-2,GER2,GLP8-10,GER4,GLP11-1,OXO4,GLP8-11,OXO3,GER7,GER5,GLP8-13,_,GLP1-3	OsGLP2-3, OsCDP2.2, CDP2.2,OsGLP9-2, OsCDP9.5, CDP9.5,OsGLP8-2, GLP8-2, OsGER3, GLP16, OsEnS-117, OsCDP8.2, CDP8.2,OsGLP9-1, OsCDP9.4, CDP9.4,OsGLP8-4, GLP8-4, OsGER1, OsGer1, OsCDP8.4, CDP8.4,OsGLP9-3, OsCDP9.6, CDP9.6,OsGLP2-2,OsGLP8-8, OsCDP8.8, CDP8.8,OsGLP8-12, OsCDP8.12, CDP8.12,OsGLP5-2, OsGLP5-1, GLP5-1, OsCDP5.2, CDP5.2,OsGLP2-4, OsGLP2-1, GLP2-1, OsCDP2.3, CDP2.3,OsGLP3-1, OsCDP3.1, CDP3.1,OsGLP8-9, OsCDP8.9, CDP8.9,OsOxO1, OsGLP3-3, GLP3-3, OsCDP3.6, CDP3.6,Osoxo4, OsOxO2, OsGLP3-4, GLP3-4, OsCDP3.7, CDP3.7,OsGLP1-5, OsGLP1-4, GLP1-4, OsCDP1.4, CDP1.4,OsGLP3-2, OsCDP3.4, CDP3.4,OsGLP8-1, OsCDP8.1, CDP8.1,OsGLP8-7, GLP8-7, OsGER6, OsRGLP2, RGLP2, OsCDP8.7, CDP8.7,OsGLP2-1, OsCDP2.1, CDP2.1,OsGLP12-3, OsCDP12.3, CDP12.3,OsGLP3-8, OsCDP3.13, CDP3.13,OsGLP12-4, OsCDP12.4, CDP12.4,OsGLP8-5, OsCDP8.5, CDP8.5,OsGLP4-1, OsCDP4.1, CDP4.1,OsGLP12-1, OsCDP12.1, CDP12.1,OsGLP8-6, OsCDP8.6, CDP8.6,OsGLP12-2, OsCDP12.2, CDP12.2,OsGLP8-3, GLP8-3, OsGER2, OsCDP8.3, CDP8.3,OsGLP8-10, OsRGLP2, RGLP2, OsCDP8.10, CDP8.10,OsGER4, OsGLP1-2, GLP1-2, OsGLP1-1, GLP1-1, OsCDP1.2, CDP1.2,OsGLP11-1, OsCDP11.1, CDP11.1,OsOxO4, OsGLP3-6, GLP3-6, OsCDP3.9, CDP3.9,OsGLP8-11, RGLP1, OsRGLP1, OsCDP8.11, CDP8.11,OsOxO3, OsGLP3-5, GLP3-5, OsCDP3.8, CDP3.8,OsGER7, OsGLP3-7, GLP3-7, OsCDP3.11, CDP3.11,OsGLP1, GLP1, GER1, GLP110, OsGER1, OsGER5, OsGLP8-14, GLP8-14, OsCDP8.14, CDP8.14,OsGLP8-13, OsCDP8.13, CDP8.13,GER8, OsGLP1-4, GLP1-4, OsGLP1-3, GLP1-3,OsGLP1-3, OsGLP1-2, GLP1-2, OsCDP1.3, CDP1.3
46389	31181089	de Freitas GM., Thomas J., Liyanage R., Lay J.O., Basu S., Ramegowda V., do Amaral MN., Benitez L.C., Bolacel Braga EJ., Pereira A.	cold tolerance response mechanisms revealed through comparative analysis of gene and protein expression in multiple rice genotypes.	PLoS ONE	14(6)	e0218019	2019	NAC58,GH3-2,TPP1,ACA6,BURP16,ZFP245,SAP8,OCPI2,SFR6	OsNAP, NAP, ONAC058, ONAC58, Os PS1, PS1, OsCTb1, CTb1,OsGH3-2, OsGH3.2, GH3.2,OsTPP1, OsTPS, TPP,osACA6, OsACA1, OsACA6, OsPM1ATPaseII, ACA3,OsRD22, RD22, OsBURP16,OsZFP245, DLN192, OsDLN192, ZOS7-08, OsZOS7-08,Osi-SAP8, OsiSAP8, OsSAP8, OsSAP1, SAP1,OsSRO1a, SRO1a, CPI2, OsCPI2, OCPI1,OsMed16_1, Med16_1, OsSFR6, OsMED16, MED16
46390	30815002	Andrade L.M., Peixoto-Junior RF., Ribeiro R.V., N?bile PM., Brito M.S., Marchiori P.E.R., Carlin S.D., Martins A.P.B., Goldman M.H.S., Llerena J.P.P., Fregonesi C., Perecin D., Neb? JFCO., Figueira A., Benatti T.R., da Silva J., Mazzafera P., Creste S.	Biomass Accumulation and Cell Wall Structure of Rice Plants Overexpressing a Dirigent-Jacalin of Sugarcane (<i>ShDJ</i>) Under Varying Conditions of Water Availability.	Front Plant Sci	10	65	2019	LEA3-1,BZIP23,_,GRAS23,P5CS,NAC29	OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3, OsLEA3A, LEA3A,OsbZIP23, OsAREB1, OsABF2, Osbzip23, OsAREB2, OsZIP23, ZIP23,OsMYB58/63, OsMYB58, OsMYB63, MYB58/63, MYB58, MYB63, OsMYB58/63b, MYB58/63b, Os2R_MYB51, 2R_MYB51,OsGRAS23, OsGRAS-23, GRAS-23, OsGRAS22, GRAS22 ,OsP5CS, P5CS1, OsP5CS1, OsALDH18B1, ALDH18B1, OsP5CS-1, P5CS-1,ONAC029, ONAC29, OsSWN2, OsSWN2L, OsSWN2S, OsNST1/2, SWN2, SWN2L, SWN2S, NST1/2, DLN201, OsDLN201
46391	30941150	Mishra P., Jain A., Takabe T., Tanaka Y., Negi M., Singh N., Jain N., Mishra V., Maniraj R., Krishnamurthy S.L., Sreevathsa R., Singh N.K., Rai V.	Heterologous Expression of Serine Hydroxymethyltransferase-3 From Rice Confers Tolerance to Salinity Stress in <i>E. coli</i> and Arabidopsis.	Front Plant Sci	10	217	2019	SHMT5,SHMT2,SHMT1,SHMT3,CADT1	OsSHM5, SHM5, OsSHMT5, OsSHTM2, SHTM2,OsSHM2, SHM2, OsSHMT2,OsSHTM4, SHTM4,OsSHM1, SHM1, OsSHMT1, CDM1, OsCDM1, OsSHTM3, SHTM3, OsSHMT, SHMT,OsSHM3, SHM3, OsSHMT3, OsSHTM5, SHTM5,OsSHM4, SHM4, OsSHMT4, SHMT4, OsSHTM1, SHTM1, OsCADT1, FLO20, OsFLO20
46392	30499169	Hui S., Shi Y., Tian J., Wang L., Li Y., Wang S., Yuan M.	TALE-carrying bacterial pathogens trap host nuclear import receptors for facilitation of infection of rice.	Mol. Plant Pathol.	20(4)	519-532	2019	IMPA1B,XA13,TFIIAGAMMA1,SULTR3;6,IMPA1A,TFX1	OsIMPA1B, IMPalpha1B, OsIMPalpha1B, Imp3, OsImpalpha1b, Impalpha1b,xa13, Xa13, Os8N3, Os-8N3, 8N3, OsSWEET11, SWEET11, OsSWEET11/Xa13, Xa13/Os8N3/SWEET11, Os8N3/Xa13, OsSWEET11/Os8N3, OsSWEET11a, SWEET11a,OsTFIIAgamma1, OsTFIIAc-1, TFIIAc-1, TFIIAgamma-1,OsSultr3;6, OsSul3;6, OsSULTR3;6 ,rImpa1a, Impa1a, Osimpa1, Osimpalpha1, OsImpalpha1a, Impalpha1a,OsbZIP73, bZIP73, OsTFX1
46393	30660943	Lu J., He J., Zhou X., Zhong J., Li J., Liang Y.K.	Homologous genes of epidermal patterning factor regulate stomatal development in rice.	J. Plant Physiol.	234-235	18-27			
46394	30617050	Cao W.L., Yu Y., Li M.Y., Luo J., Wang R.S., Tang H.J., Huang J., Wang J.F., Zhang H.S., Bao Y.M.	OsSYP121 Accumulates at Fungal Penetration Sites and Mediates Host Resistance to Rice Blast.	Plant Physiol.	179(4)	1330-1342	2019	SYP125,_,RBOHF,VAMP714,SYP131,KN,SYP132,MYB20,VAMP721,SYP121,VAMP727,SNAP32,VAMP722,SYP124,WRKY21,VAMP724,VAMP7111	OsSYP125,OsPILS7a, PILS7a, OsPINL2,RbohF, rbohF, OsrbohF, Os rbohF, OsNox6, Nox6, OsrbohE, rbohE, OsRboh6, Rboh6,OsVAMP714,OsSYP131, OsSYP131b, SYP131b,OsKN, OsSYP111, SYP111,OsSYP132, OsSYP131a, SYP131a,OsMYB20, MYB20/43, Os2R_MYB30, 2R_MYB30,OsVAMP721,OsSYP121,OsVAMP727,OsSNAP32,OsVAMP722,OsSYP124,OsWRKY21,OsVAMP724,OsVAMP7111
46395	30652247	Liao P.F., Ouyang J.X., Zhang J.J., Yang L., Wang X., Peng X.J., Wang D., Zhu Y.L., Li S.B.	OsDCL3b affects grain yield and quality in rice.	Plant Mol. Biol.	99(3)	193-204	2019	CYP704B2,DCL3B,SHMT1,PGLCT,_,_,GSL10,MIR397A,FAR8,_,MIR397B,MS2,_,_,_,FLO13,_,_,LAP6,_,_,_	OsCYP704B2,OsDCL3b,OsSHM1, SHM1, OsSHMT1, CDM1, OsCDM1, OsSHTM3, SHTM3, OsSHMT, SHMT,OsPGLCT, OspGlcT1, pGlcT1,,,OsGSL10, CalS3-2, OsCalS3-2,miR397a, osa-miR397a, osa-MIR397a, OsmiR397a,OsFAR8,,miR397b, osa-miR397b, osa-MIR397b, miR397b*, OsmiR397b, Os-MIR397b,OsMS2, OsDPW, DPW, DPW1, OsDPW1, OsFAR2, FAR2,,,OsLTP1.1, T42, OsLtp1.1, LTP1.1,OsNDUFA9, NDUFA9 ,OsNADPH1, NADPH1,,OsPKS1, PKS1, YY2, OsPKS21, PKS21, OsLAP6/OsPKS1, OsLAP6, OsCHS22, CHS22,,,
46396	30764706	Na Y.J., Choi H.K., Park M.Y., Choi S.W., Xuan Vo KT., Jeon J.S., Kim S.Y.	OsMAPKKK63 is involved in salt stress response and seed dormancy control.	Plant Signal Behav	14(3)	e1578633	2019	MAPKKK63,MKK6,MKK1	OsMAPKKK63,OsMKK6, OsMEK1, MEK1, OsMAPKK6, MAPKK6, OsMPKK6, MPKK6, OsMAP1, MAP1,OsMKK1, OsMEK2, MEK2, OsMAPKK1, MAPKK1, OsMAP2K2, MAP2K2
46397	30783573	Fang M., Zhou Z., Zhou X., Yang H., Li M., Li H.	Overexpression of <i>OsFTL10</i> induces early flowering and improves drought tolerance in <i>Oryza sativa</i> L.	PeerJ	7	e6422	2019	FTL10,GF14A,RFT1,ONAC2,HD3A,EF1,RAP1A,RAP1B,GF14B,MADS51,GF14C,GF14D,FTL1,BZIP23,GID2,DREB2A	OsFTL10,GF14a, OsGF14a, WIN2, 14-3-3a,FT-L 3, OsFTL3, FTL3, FT-L3, RFT, OsRFT1,SNAC1, snac1, OsNAC9, ONAC002, ONAC2, ONAC033, ONAC33, ONAC043, ONAC43, ONAC044, ONAC44, OsNAC19, NAC19, SNAC1/ONAC002, OsSNAC1, OsNAC9, OsNAC1,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,OsMADS15, FDRMADS3, RMADS215, MADS15, DEP,MADS14, OsMADS14, FDRMADS6, RMADS211, AGL10,GF14b, OsGF14b, 14-3-3b,OsMADS51, OsMADS65, MADS65, qHd1, DLN36, OsDLN36,GF14c, OsGF14c, 14-3-3c,GF14d, OsGF14d, Os14-3-3, 14-3-3d,FTL, FT-L1, OsFTL1, FTL1,OsbZIP23, OsAREB1, OsABF2, Osbzip23, OsAREB2, OsZIP23, ZIP23,gid2, GF14e, OsGF14e, OsGID2, 14-3-3e,OsDREB2A, OsDREB2a, ERF40, OsERF#040, OsERF040, OsERF40, AP2/EREBP#167, AP2/EREBP167
46398	30602493	Li J., Liu X., Wang Q., Huangfu J., Schuman M.C., Lou Y.	A Group D MAPK Protects Plants from Autotoxicity by Suppressing Herbivore-Induced Defense Signaling.	Plant Physiol.	179(4)	1386-1401	2019	MPK7	OsMPK7, OsMAPK44, MAPK44, OsMAPK20-5, MAPK20-5
46399	30626920	Xu L., Zhao H., Wan R., Liu Y., Xu Z., Tian W., Ruan W., Wang F., Deng M., Wang J., Dolan L., Luan S., Xue S., Yi K.	Identification of vacuolar phosphate efflux transporters in land plants.	Nat Plants	5(1)	84-94	2019	IPS1,FCO11,VPE2,SQD2.2,GLPT1,GLPT2	OsIPS1,OsFCO11, OsVPE1, VPE1,OsVPE2,OsSQD2, SQD2, OsSQD2.2,OsGlpT1, GlpT1,OsGlpT2, GlpT2
46400	30610642	Yin X., Anand A., Quick P., Bandyopadhyay A.	Editing a Stomatal Developmental Gene in Rice with CRISPR/Cpf1.	Methods Mol. Biol.	1917	257-268	2019		
46401	30737149	Yuan H., Qin P., Hu L., Zhan S., Wang S., Gao P., Li J., Jin M., Xu Z., Gao Q., Du A., Tu B., Chen W., Ma B., Wang Y., Li S.	OsSPL18 controls grain weight and grain number in rice.	J Genet Genomics	46(1)	41-51	2019	MIR156K,SPL18,DEP1	miR156k, OsmiR156k, osmiR156k, osa-miR156k, osa-MIR156k,OsSPL18,OsDEP1, EP, qPE9-1, DN1, DEP1/DN1/qPE9-1, qNGR9, qDEP1, RGG4/DEP1/DN1/qPE9-1/OsGGC3, RGG4, OsDN1, OsGGC3, GGC3
46402	30634597	Li J., Zhang M., Sun J., Mao X., Wang J., Wang J., Liu H., Zheng H., Zhen Z., Zhao H., Zou D.	Genome-Wide Characterization and Identification of Trihelix Transcription Factor and Expression Profiling in Response to Abiotic Stresses in Rice (<i>Oryza sativa</i> L.).	Int J Mol Sci	20(2)		2019	MSL27,MSL05,MSL13,SH4,GRY79,MYB3R2,MSL16,MSL37,MSL28,MSL40,MSL25,MSL39,RML1,MSL36,_,MSL11,MSL03,MSL34,MSL18,MSL02,MSL33,MSL35,MSL30,MSL32,MSL38,MSL31,MSL06,MSL04,MSL29,MSL19,MSL24,MSL26,MSL20,MSL17,MSL10,MSL15,MSL14,MSL08,MSL09,MSL41,MSL01	OsMSL27,OsMSL05, MSL5, DLN18, OsDLN18,OsMSL13, DLN59, OsDLN59, OsGTgamma-1, GTgamma-1,sh4, SH4, SHAT2, SHA1, qSH4, QSH4, OsSh4, Sh4, Osh4, OsMSL23, MSL23,OsGRY79, OsMSL12, MSL12,OsMYB3R-2, OsMYB3R2, OsMSL07, MSL07, MSL7, DLN28, OsDLN28,OsMSL16,OsMSL37, DLN247, OsDLN247, OsGTgamma-2, GTgamma-2,OsMSL28,OsMSL40, DLN253, OsDLN253, OsGTgamma-3, GTgamma-3,OsMSL25, OsMSL25a, OsMSL25b,OsMSL39,rml1, OsRML1, OsMSL21, MSL21,OsMSL36,OsGT-2, GT-2, OsMSL22, MSL22,OsMSL11,OsMSL03, MSL3,OsMSL34, OsMSL34a, OsMSL34b,OsMSL18,OsMSL02, MSL2,OsMSL33,OsMSL35,OsMSL30,OsMSL32,OsMSL38,OsMSL31,OsMSL06, MSL6,OsMSL04, MSL4,OsMSL29,OsMSL19,OsMSL24,OsMSL26,OsMSL20,OsMSL17,OsMSL10, MSL10,OsMSL15,OsMSL14,OsMSL08, MSL8,OsMSL09, MSL9,OsMSL41,OsMSL01, MSL1
46403	30682815	Kong W., Zhong H., Deng X., Gautam M., Gong Z., Zhang Y., Zhao G., Liu C., Li Y.	Evolutionary Analysis of <i>GH3</i> Genes in Six <i>Oryza</i> Species/Subspecies and Their Expression under Salinity Stress in <i>Oryza sativa</i> ssp. <i>japonica</i>.	Plants (Basel)	8(2)		2019	GH3-4,JAR3,GH3-6,TLD1,LC1,GH3-2,GH3-10,GH3-8,JAR1,JAR2,GH3-9,GH3-11,GH3-7	OsGH3-4, OsGH3.4, GH3.4,OsJAR3, OsGH3.12, GH3.12, OsGH3-12, GH3-12,OsGH3-6, OsGH3.6, GH3.6,OsGH3-13, GH3-13, TLD1/OsGH3.13, TLD1, OsGH3.13, TLD2,OsGH3-1, GH3-1, OsGH3.1,GH3.1, OsLC1,OsGH3-2, OsGH3.2, GH3.2,OsGH3-10,OsGH3-8, OsMGH3, OsGH3.8, GH3.8, OsGH3-2,OsJAR1, OsGH3.5, GH3.5, OsGH3-5, GH3-5,OsJAR2, OsGH3.3, GH3.3, OsGH3-3, JAR2/GH3-3, GH3-3, OsGH3.3/OsJAR2,OsGH3-9,OsGH3-11, OsGH3.11, GH3.11,OsGH3-7
46404	30696749	Han Y., Song L., Peng C., Liu X., Liu L., Zhang Y., Wang W., Zhou J., Wang S., Ebbole D., Wang Z., Lu G.D.	A <i>Magnaporthe</i> Chitinase Interacts with a Rice Jacalin-Related Lectin to Promote Host Colonization.	Plant Physiol.	179(4)	1416-1430	2019	SGT1,WRKY45,AOS2,PR10A,WRKY71,NAC96,_,PAL1,SALT	OsSgt1, OsSGT1, Os SGT1,OsWRKY45, OsWRKY45-1, OsWRKY45-2, WRKY45-1, WRKY45-2,OsAOS2, CYP74A2, OsAOS, OsAOS1,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsWRKY71, WRKY-71,NAC94, ONAC096, ONAC96, NAC4, OsNAC4, OsNAC94,OsABA45, ABA45, OsGDP, GDP, OsASR, ASR,OsPAL, Pal1*, Pal1, PAL, Pal_1, PalI, PAL2, OsPAL01, PAL01, OSPAL, CP-1, GP-1, OsPAL1, PAL3, OsPAL3,salT*(sal1), SalT1*, sal1, Sal1, SALT, ML, SalT, OsSalT, OsJRL, JRL, Osl43, OsL43, OsMBL1, MBL1, OsJRL01, JRL01, OsJRL1, JRL1
46405	30636971	Huang J., Xia T., Li G., Li X., Li Y., Wang Y., Wang Y., Chen Y., Xie G., Bai F.W., Peng L., Wang L.	Overproduction of native endo-beta-1,4-glucanases leads to largely enhanced biomass saccharification and bioethanol production by specific modification of cellulose features in transgenic rice.	Biotechnol Biofuels	12	11	2019	GH9B3,GH9B1	OsGH9B3,OsGH9B1
46406	30626336	Nawaz G., Kang H.	Rice OsRH58, a chloroplast DEAD-box RNA helicase, improves salt or drought stress tolerance in Arabidopsis by affecting chloroplast translation.	BMC Plant Biol.	19(1)	17	2019	RH58	OsRH58
46407	31178878	Lin Y., Sun Z., Li Z., Xue R., Cui W., Sun S., Liu T., Zeng R., Song Y.	Deficiency in Silicon Transporter Lsi1 Compromises Inducibility of Anti-herbivore Defense in Rice Plants.	Front Plant Sci	10	652	2019	AOS2,COI1B,RBBI3-3,LSI1,COI1	OsAOS2, CYP74A2, OsAOS, OsAOS1,OsCOI1b, COI1b, OsCOI1H, COI1H, OsFbox260, Fbox260, Os_F0646,  OsFBL23, FBL23, OsCOl-1, COl-1,RBBI3-3, OsBBPI, BBPI, IBP1.2, OsIBP1.2, OsBBTI5, BBTI5,lsi1, NIP2-1, OsNIP2;1, NIP2;1, OsLsi1, lsi(t), OsNIP2.1/OsLsi1/OsSIIT1, OsNIP2.1, NIP2.1,OsCOI1a, OsCOI1, Os_F0728, COI1a, F0728,  OsFBL4, FBL4
46408	30833955	Tang Y., Bao X., Zhi Y., Wu Q., Guo Y., Yin X., Zeng L., Li J., Zhang J., He W., Liu W., Wang Q., Jia C., Li Z., Liu K.	Overexpression of a MYB Family Gene, <i>OsMYB6</i>, Increases Drought and Salinity Stress Tolerance in Transgenic Rice.	Front Plant Sci	10	168	2019	CATA,LEA3-1,P5CS,_,DREB1A,ONAC2,DREB2A	CATA1, Cat A1*, OSCAT-A, Cat2, CatA1, CAT-A, OsCatA, OsCAT, CAT, catA, OSCATA, OsCATc, OsCATA, OsCAT1A, CAT1, OsCAT1, OsCATC, OsCAT2,OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3, OsLEA3A, LEA3A,OsP5CS, P5CS1, OsP5CS1, OsALDH18B1, ALDH18B1, OsP5CS-1, P5CS-1,OsMYB6, MYB6,OsDREB1A, Os DREB1A, CBF3, OsCBF3, OsDREB1A/OsCBF3, ERF24, OsERF24, OsERF024, OsERF#024, AP2/EREBP#114, AP2/EREBP114, OsDREBL,SNAC1, snac1, OsNAC9, ONAC002, ONAC2, ONAC033, ONAC33, ONAC043, ONAC43, ONAC044, ONAC44, OsNAC19, NAC19, SNAC1/ONAC002, OsSNAC1, OsNAC9, OsNAC1,OsDREB2A, OsDREB2a, ERF40, OsERF#040, OsERF040, OsERF40, AP2/EREBP#167, AP2/EREBP167
46409	30678069	Zha K., Xie H., Ge M., Wang Z., Wang Y., Si W., Gu L.	Expression of Maize MADS Transcription Factor <i>ZmES22</i> Negatively Modulates Starch Accumulation in Rice Endosperm.	Int J Mol Sci	20(3)		2019	GIF1	gif1, CIN2, OsCIN2, OsGIF1, WB1, OsWB1, GIF1/OsCIN2
46410	30806155	Moraes de Freitas GP., Basu S., Ramegowda V., Thomas J., Benitez L.C., Braga E.B., Pereira A.	Physiological and transcriptional responses to low-temperature stress in rice genotypes at the reproductive stage.	Plant Signal Behav	14(4)	e1581557	2019		
46411	31039145	Ijaz B., Formentin E., Ronci B., Locato V., Barizza E., Hyder M.Z., Lo Schiavo F., Yasmin T.	Salt tolerance in indica rice cell cultures depends on a fine tuning of ROS signalling and homeostasis.	PLoS ONE	14(4)	e0213986	2019	LEA22,LEA3-1,RAB16A,KAT1,ERF131,NHX1,TPKA,RBOHA,CAX2,ERD4,DREB2A,HAK5,PYL/RCAR4,SOS1	OsLEA22, RAB25, OsRab16, Rab16, OsABA45, ABA45,OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3, OsLEA3A, LEA3A,Rab16A, rab21, RAB21, OsRab21, OsRAB21, OsRAB-21, OsRab16A, OsLEA29, rab16A, OsRAB16A,OsKAT1, OsKAT3,OsERF#131, OsERF131, AP2/EREBP#094, AP2/EREBP94, SERF1, OsSERF1,OsNHX1, OcNHX1, OgNHX1, OrNHX1, OpNHX1, ObNHX1,TPKa, OsTPKa, OsTpka, TPK1a, OsTPK1a,rbohA, OsrbohA, Os rbohA, OsRbohA, OsNox2, Nox2, OsRboh2, Rboh2,OsCAX2, CAX5, OsNCX7, OsNCX7.1, OsNCX7.2, NCX7, OsVCX2, OsOSCA1.2, OSCA1.2,OsOSCA3.1, OSCA3.1, OsIOSCA3.1, OsERD4, OsDDP7, DDP7, OsDDP7.1, OsDDP7.2,OsDREB2A, OsDREB2a, ERF40, OsERF#040, OsERF040, OsERF40, AP2/EREBP#167, AP2/EREBP167,OsHAK5, FCO13, OsFCO13,OsPYL/RCAR4, PYL4, OsPYL4, OsPYL6, PYL6,OsSOS1, OsNHA1, NHA1, SOS1/NHX7, NHX7, OsNHX7
46412	30701663	Abbai R., Singh V.K., Nachimuthu V.V., Sinha P., Selvaraj R., Vipparla A.K., Singh A.K., Singh U.M., Varshney R.K., Kumar A.	Haplotype analysis of key genes governing grain yield and quality traits across 3K RG panel reveals scope for the development of tailor-made rice with enhanced genetic gains.	Plant Biotechnol. J.			2019	SNB,SD1,SET33,MOC1,EP3,GS5,LC2,GW2,WFP,PHD1,OSH1,OUL1,SP1,DEP1,YAB5,DEP3,RSR1,NAS3,GHD7,LAX1,SHL4	AP2/EREBP#073, AP2/EREBP73, AP2-3, OsAP2-3, SSH1, OsSSH1, OsSNB, DLN181, DLN181a, DLN181b, OsDLN181, OsDLN181a, OsDLN181b, SUI4, OsSUI4, SUI4/SNB,sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2, OsPHQ1, OsPHq1, PHq1,OsSET33, OsSDG723, SDG723, OsTrx1, Trx1, OsTrx1/SDG723, DLN219, OsDLN219,moc1, OsMOC1, OsGRAS-33, OsGRAS33, GRAS-33, GRAS33, GNP6, OsGNP6,EP3/LP, LP, OsLP, OsFbox076, OsFbox76, Os_F0106, OsEP3,  OsFBK5, FBK5,OsSCP26, SCP26, OsGS5,OsLC2, OsVIL2, VIL2, OsVIL3,OsGW2, OsRING429, RING429, GNL44, OsGNL44,OsSPL14, SPL14, IPA1, WFP/IPA1, OsSPL14/WFP/IPA1, OsIPA1,  IPA1/OsSPL14,OsPHD1,  LM212-1,OSKN1, Oskn1, OsKN1, OSH1/Oskn1, HB75,ROC5, Roc5(t), Roc5, GL2-5, OsROC5, CLF1, OsCLF1, OsOUL1, OsHDZ7, OsHDZIP7, HDZ7, HDZIP7,sp, SP, OsNPF4.1, NPF4.1, OsSP1,OsDEP1, EP, qPE9-1, DN1, DEP1/DN1/qPE9-1, qNGR9, qDEP1, RGG4/DEP1/DN1/qPE9-1/OsGGC3, RGG4, OsDN1, OsGGC3, GGC3,OsYABBY5, OsYAB3, YAB3, Os YABBY5, TOB1, OsTPB1,dep3, OspPLAIIIdelta, pPLAIIIdelta,AP2/EREBP#090, AP2/EREBP90, OsTOE1, TOE1, qHD5, AP2-1, AP2/EREBP/RSR1, OsRSR1, DLN130, DLN130a, DLN130b, OsDLN130, OsDLN130a, OsDLN130b,OsNAS3,Ghd2, Ghd7, OsGhd7, OsCCT26, OsCMF8, OsI, Ghd7/Hd4, Hd4, EH7-1/Hd4, Ghd7-0a, EH7-1, EH7/Ghd7, EH7, OsEH7, GLW7.1, OsGLW7.1,lax, lax(lx), lx, OsbHLH123, bHLH123, OsLAX1, BOS1, OsBOS1,shl4, sh4, OsAGO7, SHO2, AGO7, SHL4/SHO2
46413	31120929	Midorikawa K., Kuroda M., Yamashita H., Tamura T., Abe K., Asakura T.	Oryza sativa Brittle Culm 1-like 6 modulates beta-glucan levels in the endosperm cell wall.	PLoS ONE	14(5)	e0217212	2019	BC1L4,BC1L6,BC1L9,BC1L7,_,BC1L5,BC1L3,BC1L1,BC1L8	OsBC1L4, OsPCS7, PCS7,OsBC1L6, OsPCS8, PCS8,OsBC1L9, OsPCS2, PCS2,OsBC1L7, OsPCS6, PCS6,OsBC1L2, BC1L2,OsBC1L5, OsPCS11, PCS11,OsBC1L3, OsPCS14, PCS14,OsBC1L1, OsPCS13, PCS13,OsBC1L8, PCS12, OsPCS12
46414	30846998	Chen J., Qi T., Hu Z., Fan X., Zhu L., Iqbal M.F., Yin X., Xu G., Fan X.	<i>OsNAR2.1</i> Positively Regulates drought tolerance and grain yield Under Drought Stress Conditions in Rice.	Front Plant Sci	10	197	2019	NRT2.2,ERF3,HTNE,DREB2A,RAB16C,NAC122,P5CS,NAR2.1,2R_MYB36 ,ONAC2,NRT2.1	OsNRT2.2, OsNRT2.1,AP37, OsAP37, OsERF3, OsERF#075, OsERF075, OsERF75, ERF75, AP2/EREBP#004, AP2/EREBP4, OsBIERF2, BIERF2, DLN23, OsDLN23,NRT2.3, OsNRT2.3, OsNRT2;1, OsNRT2.3a, OsNRT2.3b, OsNRT2;3a, OsNRT2.5 ,OsDREB2A, OsDREB2a, ERF40, OsERF#040, OsERF040, OsERF40, AP2/EREBP#167, AP2/EREBP167,rab21, OsLEA27, rab16C, OsRAB16C, DHD,OsNAC10, NAC10, ONAC122, NAC122, OsSNAC10, SNAC10,OsP5CS, P5CS1, OsP5CS1, OsALDH18B1, ALDH18B1, OsP5CS-1, P5CS-1,OsNAR2.1, OsNRT3.1A,OsMYB2, MYB2, Os2R_MYB36 ,SNAC1, snac1, OsNAC9, ONAC002, ONAC2, ONAC033, ONAC33, ONAC043, ONAC43, ONAC044, ONAC44, OsNAC19, NAC19, SNAC1/ONAC002, OsSNAC1, OsNAC9, OsNAC1,OsNRT2.1, OsNRT2.2
46415	30645710	Lee K., Eggenberger A.L., Banakar R., McCaw M.E., Zhu H., Main M., Kang M., Gelvin S.B., Wang K.	CRISPR/Cas9-mediated targeted T-DNA integration in rice.	Plant Mol. Biol.	99(4-5)	317-328	2019		
46416	31293603	Hong Y., Liu Q., Cao Y., Zhang Y., Chen D., Lou X., Cheng S., Cao L.	The <i>OsMPK15</i> Negatively Regulates <i>Magnaporthe oryza</i> and <i>Xoo</i> disease resistance via SA and JA Signaling Pathway in Rice.	Front Plant Sci	10	752	2019	AOS1,PR5,MSRMK2,DSG1,AOS2,CHIB1,MPKK5,WRKY45,PAL1,MPK16,PR10A,PR4,_	OsAOS, OsAOS1, CYP74A1, OsAOS2, AOS2,OsPR5, Pir2, PR-5, PR5-1,OsMSRMK2, OsMAPK5, OsMAP1, OsMPK3, OsBIMK1, OsMAPK2, MPK5, BIMK1, MAPK2, MAPK5, MPK3, OsMPK5, OsMAPK3, OsMAPK5b, MAPK3,OsMAPK6, MAPK6, OsMPK6, OsSIPK, SIPK, OsMAPK1, MAPK1, MPK1, OsMPK1, MPK6, OsDSG1,OsAOS2, CYP74A2, OsAOS, OsAOS1,Oschib1, chib1, PR-8, PR8, OsPR8, OsPR8b, PR8b,OsMPKK5,OsWRKY45, OsWRKY45-1, OsWRKY45-2, WRKY45-1, WRKY45-2,OsPAL, Pal1*, Pal1, PAL, Pal_1, PalI, PAL2, OsPAL01, PAL01, OSPAL, CP-1, GP-1, OsPAL1, PAL3, OsPAL3,OsMPK16, OsMPK15, MPK15, OsMAPK16, MAPK16,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsPR4, OsPR4a, PR4a, OsPR-4,Lox2:Os:1, OsLOX9, LOX9, OsLOX8, LOX8, OsLOX2, LOX2, OsRLL, OsHI-LOX, HI-LOX, RLL2 LOX, RLL2, Lox2osPil, OsLOX2;1, LOX2;1, OsLOX1, OsLOX7, LOX7
46417	30697955	Xie E., Li Y., Tang D., Lv Y., Shen Y., Cheng Z.	A strategy for generating rice apomixis by gene editing.	J Integr Plant Biol			2019	RAD21-4,OSD1,TOP6A1,MATL	OsRad21-4, REC8, OsREC8, OsRAD21-4,OsOSD1,OsTOP6A1, OsSPO11-1, OsSPO11A, SPO11-1,OspPLAIIbeta, pPLAIIbeta, OspPLAIIphi, pPLAIIphi, NLD, PLP1, OspPLAIIphi/PLP1, OsMATL, MTL, OsMTL
46418	30658457	El-Esawi MA., Alayafi A.A.	Overexpression of Rice <i>Rab7</i> Gene Improves Drought and heat tolerance and Increases grain yield in Rice (<i>Oryza sativa</i> L.).	Genes (Basel)	10(1)		2019	CATA,LEA3-1,_,NAC6,ERF42,RAB7B3,CATB,RAB16C,ONAC2,DREB2A,RAB16A	CATA1, Cat A1*, OSCAT-A, Cat2, CatA1, CAT-A, OsCatA, OsCAT, CAT, catA, OSCATA, OsCATc, OsCATA, OsCAT1A, CAT1, OsCAT1, OsCATC, OsCAT2,OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3, OsLEA3A, LEA3A,OsRD29A, RD29A,OsNAC6, ONAC048, NAC48, SNAC2, SNAC2/OsNAC6, OsNAC6/ONAC048, OsSNAC2, SNAC-2, OsSNAC-2, OsNAC2,OsERF#042, OsERF042, OsERF42, AP2/EREBP#048, AP2/EREBP48, OsDREB2B, DREB2B, OsDREB2B2, OsDREB2A, DREB2A,OsRab7B3, Rab7B3, OsRab7, Rab7,CatB, CAT-B, OsCatB, OsCATB, OsCAT1B, CAT1B, CAT2, OsCAT2,rab21, OsLEA27, rab16C, OsRAB16C, DHD,SNAC1, snac1, OsNAC9, ONAC002, ONAC2, ONAC033, ONAC33, ONAC043, ONAC43, ONAC044, ONAC44, OsNAC19, NAC19, SNAC1/ONAC002, OsSNAC1, OsNAC9, OsNAC1,OsDREB2A, OsDREB2a, ERF40, OsERF#040, OsERF040, OsERF40, AP2/EREBP#167, AP2/EREBP167,Rab16A, rab21, RAB21, OsRab21, OsRAB21, OsRAB-21, OsRab16A, OsLEA29, rab16A, OsRAB16A
46419	30923712	Li N., Wang Y., Lu J., Liu C.	Genome-Wide Identification and Characterization of the ALOG Domain Genes in Rice.	International Journal of Genomics	2019	2146391	2019	G1L3,G1L2,MADS22,G1L11,G1,G1L9,MADS50,G1L4,G1L5,G1L1,G1L12,BLS1,G1L7,G1L10,G1L8,G1L13,MADS55	OsG1L3,OsG1L2,OsMADS22, RMD1, DLN68, OsDLN68,OsG1L11,g1 (lng), lng, g1, ELE, Os ELE, OsG1, G1/ELE, LSL2, OsLSL2,OsG1L9,OsMADS50, AGL20, SOC1, OsSOC1, RMADS208, OsSOC1/ OsMADS50/DTH3, DTH3, OsDTH3,OsG1L4,OsG1L5, TAW1, OsTAW1,OsG1L1,OsG1L12,OsBLS1, OsG1L6, G1L6, TH1, OsTH1, TH1/BSG1/BLS1/AFD1, BSG1, OsBSG1, AFD1, OsAFD1, BH1, OsBH1,OsG1L7,OsG1L10,OsG1L8,OsG1L13,OsMADS55, DLN163, OsDLN163
46420	30628157	Ji X., Du Y., Li F., Sun H., Zhang J., Li J., Peng T., Xin Z., Zhao Q.	The basic helix-loop-helix transcription factor, OsPIL15, regulates grain size.via directly targeting a purine permease gene OsPUP7 in rice.	Plant Biotechnol. J.			2019	PIL15,PUP7	OsPIL15, OsbHLH105, PIF3, OsPIF3,OsPUP7
46421	31244876	Wang B., Xie G., Liu Z., He R., Han J., Huang S., Liu L., Cheng X.	Mutagenesis Reveals That the <i>OsPPa6</i> Gene Is Required for Enhancing the Alkaline Tolerance in Rice.	Front Plant Sci	10	759	2019	_,_,_,_,_,PPA6,GS2,_	,,,,,OsPPa6, PPa6,OsGS2, GLN2, OsGLN2, RGS31, OsRGS31,
46422	30641408	Li Y., Li C., Cheng L., Yu S., Shen C., Pan Y.	Over-expression of OsPT2 under a rice root specific promoter Os03g01700.	Plant Physiol. Biochem.	136	52-57	2019		
46423	30535321	Xu F., Wang K., Yuan W., Xu W., Shuang L., Kronzucker H.J., Chen G., Miao R., Zhang M., Ding M., Xiao L., Kai L., Zhang J., Zhu Y.	Overexpression of rice aquaporin OsPIP1;2 improves yield by enhancing mesophyll CO2 conductance and phloem sucrose transport.	J. Exp. Bot.	70(2)	671-681	2019	PIP1;2	OsPIP1;2, PIP1-2, OsPIP1-2
46424	30626141	Descalsota-Empleo GI., Noraziyah A.A.S., Navea I.P., Chung C., Dwiyanti M.S., Labios R.J.D., Ikmal A.M., Juanillas V.M., Inabangan-Asilo MA., Amparado A., Reinke R., Cruz C.M.V., Chin J.H., Swamy B.P.M.	Genetic Dissection of Grain Nutritional Traits and Leaf Blight Resistance in Rice.	Genes (Basel)	10(1)		2019		
46425	30675653	Ma T., Dong F., Luan D., Hu H., Zhao J.	Gene expression and localization of arabinogalactan proteins during the development of anther, ovule, and embryo in rice.	Protoplasma	256(4)	909-922	2019	AGP16,ENODL16,AGP7,_,_,_,_,CBMIP-K,FLA10,UCL33,_,_,_,ENODL14,NRFG3,HYPRP8,EPAD1,_,PMEI27,_,FLA2,_,ENODL9	OsAGP16,OsENODL16,OsAGP7,AGP, OsAGP,AGP, OsAGP,AGP, OsAGP,OsLTPG24, OsLTPg24, OsLtpVIII.1, LTPG24, LTPg24, LtpVIII.1,AGP, OsAGP, OsCBMIP-K,OsFLA10,OsUCL33,AGP, OsAGP,AGP, OsAGP,AGP, OsAGP,OsENODL14,OsENODL17, ENODL17, OsNRFG3,OsHyPRP08, HyP/GRP08, OsHyPRP8, HyP/GRP8, OsHyPRP14, HyPRP14,AGP, OsAGP, OsEPAD1,LTPG1, OsLTPG1, OsLTPg1, AGP, OsAGP, OsXYLP8, XYLP8, LTPL65,AGP, OsAGP, OsPMEI27,AGP, OsAGP,OsFLA2,AGP, OsAGP,OsENODL9
46426	30621581	Lee H.S., Hwang W.H., Jeong J.H., Ahn S.H., Baek J.S., Jeong H.Y., Park H.K., Ku B.I., Yun J.T., Lee G.H., Choi K.J.	Analysis of the distribution of assimilation products and the characteristics of transcriptomes in rice by submergence during the ripening stage.	BMC Genomics	20(1)	18	2019	RSUS2,ALK,AGPS1,AGPL3,WX1,PUL,SPS1,SUT1,SSI,SBE1	sus2, RSus2(t), SUS2, SS1, OsScS1, RSs1, RSus2, OsSUS2, RSS1, RSus1, OsSusy2, Susy2, OsRSUS1, RSUS1,alk, SSII-3, OsSSIIa, OsSSII-3, SSIIa, SSS2A, OsSSIIaChr6, SS2a,OsAGPS1, APS1, OsAPS1, AGPsma,OsAGPL3, APL3, OsAPL3, AGPlar, OsAGPL1, AGPL1,wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx,OsPUL, SDBE, OsPUL3, RE,sps1, OsSPS1, SPS,OsSUT1, OsSUT2,OsSSI, SSS 1, SSS1, SS1, OsSS1, SSSI, OsSSSI,sbe1, Rbe1. Sbe1, sbe1*(QEI), RBE1, BEI, SBE I, QEI, OsBEI, BE1, OsSBE1, OsSBEI, SBEI
46427	30693011	Chandran V., Wang H., Gao F., Cao X.L., Chen Y.P., Li G.B., Zhu Y., Yang X.M., Zhang L.L., Zhao Z.X., Zhao J.H., Wang Y.G., Li S., Fan J., Li Y., Zhao J.Q., Li S.Q., Wang W.M.	MiR396-<i>OsGRF</i>s Module Balances Growth and Rice blast disease-Resistance.	Front Plant Sci	9	1999	2018	GRF9,GRF6,GRF2,MIR396H,MIR396E,MIR396G,GRF5,MIR396F,MIR396A,GRF3,MIR396B,MIR396C,GS2,GRF8,MIR396D,GRF11,GRF7	OsGRF9,OsGRF6,OsGRF2,miR396h, osa-miR396h, osa-MIR396h,miR396e, osa-miR396e, osa-MIR396eosa-miR396e-3p osa-miR396e-5p,miR396g, osa-miR396g, osa-MIR396g,OsGRF5,miR396f, osa-miR396f, osa-MIR396fosa-miR396f-3p osa-miR396f-5p,miR396a, osa-miR396a, osa-MIR396aosa-miR396a-3p osa-miR396a-5p, OsmiR396a,OsGRF3,miR396b, osa-miR396b, osa-MIR396bosa-miR396b-3p osa-miR396b-5p, OsmiR396b,miR396c, osa-miR396c, osa-MIR396c, osa-miR396c-3p, osa-miR396c-5p, OsmiR396c,OsGRF4, GRF4, GS2/OsGRF4, PT2, GLW2, GS2/GL2, LGS1, OsLGS1,OsGRF8,miR396d, osa-miR396d, osa-MIR396d,OsGRF11,OsGRF7
46428	30671680	Mao X., Zhang J., Liu W., Yan S., Liu Q., Fu H., Zhao J., Huang W., Dong J., Zhang S., Yang T., Yang W., Liu B., Wang F.	The MKKK62-MKK3-MAPK7/14 module negatively regulates seed dormancy in rice.	Rice (N Y)	12(1)	2	2019	MKK3,_,MAP3,MAPK4,MFT2	OsMKK3, OsMAPKK3, MAPKK3, OsMEK8a, MEK8a, OsMEK3, MEK3,OsNPK1-PK, NPK1-PK, OsMKKK62, MKKK62, OsMAPKKK62, MAPKKK62, MEK7, OsMEK7,OsMAPK33, OsMPK14, OsMAPK2, OsMAP3, OsMAPK14, OsMPK3, MAPK33, MPK14, MAPK2, MAPK14, MPK3, OsMAPK3, MAPK3,OsMAPK4, OsMAP2, OsMSRMK3, OsMPK4, OsMPK7, MAP2, MSRMK3, MPK4, MPK7, MAPK7, OsMAPK7,OsMFT2, OsMFT
46429	30804974	Subramanyam K., Du Laing G., Van Damme EJM.	Sodium Selenate Treatment Using a Combination of Seed Priming and Foliar Spray Alleviates Salinity Stress in Rice.	Front Plant Sci	10	116	2019	NHX1	OsNHX1, OcNHX1, OgNHX1, OrNHX1, OpNHX1, ObNHX1
46430	31191567	Zhang L., Chen L., Dong H.	Plant Aquaporins in Infection by and Immunity Against Pathogens - A Critical Review.	Front Plant Sci	10	632	2019	PIP1;3,XA13	OsPIP1;3. PIP1.3, PIP1-3, RWC3, RWC-3, OsPIP1-3,xa13, Xa13, Os8N3, Os-8N3, 8N3, OsSWEET11, SWEET11, OsSWEET11/Xa13, Xa13/Os8N3/SWEET11, Os8N3/Xa13, OsSWEET11/Os8N3, OsSWEET11a, SWEET11a
46431	30032201	Salvador-Guirao R., Baldrich P., Tomiyama S., Hsing Y.I., Okada K., San Segundo B.	OsDCL1a activation impairs phytoalexin biosynthesis and compromises disease resistance in rice.	Ann. Bot.	123(1)	79-93	2019	PR10B,CYP71Z7,_,WAK47,PR10A,CYP76M6,CPS4,SDR110C-MS2,RPR1,DCL1,KS7,SDRLK42,CPS2,PR1A,MIR398B,_,MIR393,POX3006	RPR10b, PR-10b, PR10b, PBZ1, PBZ-1, OsPBZc, OsPR10b, BetV, OsBetV,Oscyp71Z7, OsCYP71Z6, CYP71Z6,prx34, OsPrx34,OsWAK47, OsRLCK147, RLCK147,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsCYP76M6, OsCYP76-5, CYP76-5, OsCYP71T5, CYP71T5,OsCPS4, CYC1, OsCYC1, OsCyc1, cpsl3, OsCPSL3, OsCPSsyn, OsCyc1/OsCPS4, OsTPS15, Os-CPS4, TPS11, OsTPS11,OsSDR110C-MS2, OsMAS1, MAS1, OsMS2, MS2, MAS2,RPR1*, Rpr1-1, Rpr1, RPM1, OsRPM1, OsRSR1, RSR1,Dcl1, OsDCL1, osDCL1, Os-DCL1, OsDCL1a, DCL1a,OsKS7, KS7, KSL7, OsKSL7, DTC1, OsDTC1, OsKS3, OsDTC1/OsKS7, OsTPS6, TPS6, TPS38, OsTPS38,SDRLK-42, OsSDRLK-42, OsSDRLK42,OsCPS2, cps2, OsCPS2ent, CYC2, OsCyc2, OsCYC2, OsCPSL1, cpsl1, OsCyc2/OsCPS2, OsTPS7, Os-CPS2, TPS13, OsTPS13,OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1, OsPR1b, PR1alpha, OsPR1alpha,miR398b, osa-miR398b, osa-MIR398b, OsmiR398b,PR10, OsPR10C, PR10C,OsmiR393, osa-MIR393, osa-MIR393a, OsmiR393a, miR393a ,POX3006, prx114, Osprx114, PO-C1, POC-1, POC1, OsPOC1, Prx14, OsPrx14, POD3006, OsPOD3006
46432	30984209	Moon S.J., Min M.K., Kim J.A., Kim D.Y., Yoon I.S., Kwon T.R., Byun M.O., Kim B.G.	Ectopic Expression of <i>OsDREB1G</i>, a Member of the OsDREB1 Subfamily, Confers Cold Stress Tolerance in Rice.	Front Plant Sci	10	297	2019	DREB1G,DREB1A,REM4.1,ADF3,DREB1C,DREB1B	OsDREB1G, OsERF025, OsERF#025, OsERF25, ERF25, AP2/EREBP#138, AP2/EREBP138, OsDREB1I,OsDREB1A, Os DREB1A, CBF3, OsCBF3, OsDREB1A/OsCBF3, ERF24, OsERF24, OsERF024, OsERF#024, AP2/EREBP#114, AP2/EREBP114, OsDREBL,OsREM4.1,OsADF3,OsDREB1C, CBF1, ERF26, OsERF026, OsERF#026, OsERF26, AP2/EREBP#098, AP2/EREBP98, OsCBF2, CBF2,OsDREB1B, ERF31, OsERF031, OsERF#031, OsERF31, AP2/EREBP#169, AP2/EREBP169, OsDREB1b, OsDREB1C, OsCBF1, CBF1
46433	30639786	Bari M.A., Akther M.S., Reza M.A., Kabir A.H.	Cadmium tolerance is associated with the root-driven coordination of cadmium sequestration, iron regulation, and ROS scavenging in rice.	Plant Physiol. Biochem.	136	22-33	2019		
46434	30584664	Shi W., Tang D., Shen Y., Xue Z., Zhang F., Zhang C., Ren L., Liu C., Du G., Li Y., Yan C., Cheng Z.	Oshop2 regulates the maturation of crossovers by promoting homologous pairing and synapsis in rice meiosis.	New Phytol.	222(2)	805-819	2019	RAD21-4,COM1,HOP2,RAD51C,HEI10,ZEP1	OsRad21-4, REC8, OsREC8, OsRAD21-4,OsCOM1,OsHOP2,OsRAD51C, OsRad51C, RAD51C-1, RAD51C-2, RAD51C-3,HEI10A, HEI10B, OsHEI10,  OsRING434, RING434,OsZEP1
46435	31231411	L?pez-Cristoffanini C., Serrat X., J?uregui O., Nogu?s S., L?pez-Carbonell M.	Phytohormone Profiling Method for Rice: Effects of <i>GA20ox</i> Mutation on the Gibberellin Content of Japonica Rice Varieties.	Front Plant Sci	10	733	2019	SD1	sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2, OsPHQ1, OsPHq1, PHq1
46436	30870429	Kishor D.S., Lee C., Lee D., Venkatesh J., Seo J., Chin J.H., Jin Z., Hong S.K., Ham J.K., Koh H.J.	Novel allelic variant of Lpa1 gene associated with a significant reduction in seed phytic acid content in rice (Oryza sativa L.).	PLoS ONE	14(3)	e0209636	2019	LPA1-P,LPA1	OsLpa1-P, Lpa1-P,Lpa1, OsLpa1, OsLpa1.1, OsLpa1.2, OsLpa1.3, Oslpa1, OsLpa1-3.1, OsLpa1-3.2, OsLpa1-3.3
46437	30610522	Yang Z., Liu L., Sun L., Yu P., Zhang P., Abbas A., Xiang X., Wu W., Zhang Y., Cao L., Cheng S.	osms1 functions as a transcriptional activator to regulate programmed tapetum development and pollen exine formation in rice.	Plant Mol. Biol.	99(1-2)	175-191	2019	CP1,CYP704B2,C6,CYP703A3,PTC1,RADC1,AP37 ,RAP1A,EAT1,OSC4,TDR,GAMYB,BHLH142	OsCP1, Os CP1,OsCYP704B2,Osc6, Osg6B, OsG6B, OsLTPG25, OsLTPg25, OsLtpVII.1, Os C6,OsCYP703A3,OsMS1, tms9-1, OsPTC1, MS1, TMS9-1, OsTMS9-1,OsAP25, Radc1, OsRADC1, AP25,OsAP37,OsMADS15, FDRMADS3, RMADS215, MADS15, DEP,OsEAT1, OsbHLH141, EAT1/DTD1, bHLH141, DTD1, DTD, DLN120, OsDLN120,Osc4, OsC4, Osg4B, OsLTPc1, OsLtpIII.1, C4,tdr, OsbHLH005, bHLH005, OsbHLH5, bhlh5, TDR1, OsTDR, OsTDR1, OsMYC5, MYC5,OsGAMYB, GAM1, OsGAMyb, Os-MYBGA, Os GAMYB, OsMYBGA, MYBGA, Os2R_MYB15, 2R_MYB15 ,OsbHLH142, bHLH142, TIP2, OsTIP2, TIP2/TDR/bHLH142
46438	30626335	Shalmani A., Jing X.Q., Shi Y., Muhammad I., Zhou M.R., Wei X.Y., Chen Q.Q., Li W.Q., Liu W.T., Chen K.M.	Characterization of B-BOX gene family and their expression profiles under hormonal, abiotic and metal stresses in Poaceae plants.	BMC Genomics	20(1)	27	2019	_,BBX7,BBX28,BBX9,BBX8,BBX25,COL4,BBX3,COL15,_,SE1,_,BBX6,_,_,DTH2,BBX15,BBX12,CO3,BBX10,_,BBX23,STO,BBX17,BBX20,_,_,_,RNG1,_	OsBBX22, BBX22,OsN, OsBBX7, OsCCT08, OsCCT8, OsDTH2, CCT08, CCT8, DTH2,OsBBX28, OsCCT32, OsQ, CCT32,OsP, OsBBX9, OsCCT12, CCT12,OsBBX8, OsK, OsCCT09, OsGhd2, OsK/Ghd2, CCT09, Ghd2,OsBBX25, OsG, OsCCT29, CCT29,OsCOL4, OsD, OsBBX5, OsCOL4/OsD, OsCCT06, BBX5, CCT06,OsBBX3, OsF, OsCCT05, CCT05,OsBBX26, BBX26, OsO, OsCCT30, CCT30, OsCOL15, OsCOL15/OsBBX26, Hd1-3,OsBBX29, OsDBB1, BBX29, DBB1, DLN230, OsDLN230,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, OsHd1,  Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,OsBBX30, BBX30,OsBBX6,OsBBX2, BBX2,OsBBX1, OsDBB3c, BBX1, DBB3c,OsBBX19, BBX19, OsM, OsDTH2, qDTH-2, OsCCT22, CCT22,OsBBX15, OsCCT19, OsS, OsSTA162, CCT19, STA162,OsBBX12, OsC, OsCCT16, CCT16,OsB, OsCO3, OsBBX27, OsCO3/OsB, OsCCT31, CO3, BBX27, CCT31,OsBBX10, OsJ, OsCCT14, OsCOL10, COL10, OsCOL9, CCT14, COL9,OsBBX13, BBX13, OsRIP1, RIP1,OsBBX23, OsCCT27, CCT27, OsR, OsCOL13, COL13,OsBBX11, OsSTO, BBX11, BBX24, OsBBX24,OsBBX17, OsL, OsCCT20, CCT20, OsCOL16, COL16,OsBBX20, OsE, OsCCT23, CCT23,OsBBX21, BBX21,OsBBX14, BBX14, OsDBB3b, DBB3b,OsBBX24, BBX24,OsBBX4, BBX4, OsSTH, STH, OsRNG1,OsBBX16, OsDBB3a, BBX16, DBB3a
46439	30784850	Muhammad I., Li W.Q., Jing X.Q., Zhou M.R., Shalmani A., Ali M., Wei X.Y., Sharif R., Liu W.T., Chen K.M.	A systematic in silico prediction of gibberellic acid stimulated GASA family members: A novel small peptide contributes to floral architecture and transcriptomic changes induced by external stimuli in rice.	J. Plant Physiol.	234-235	117-132			
46440	30808744	Mao D., Xin Y., Tan Y., Hu X., Bai J., Liu Z.Y., Yu Y., Li L., Peng C., Fan T., Zhu Y., Guo Y.L., Wang S., Lu D., Xing Y., Yuan L., Chen C.	Natural variation in the <i>HAN1</i> gene confers chilling tolerance in rice and allowed adaptation to a temperate climate.	Proc. Natl. Acad. Sci. U.S.A.	116(9)	3494-3501	2019	DREB1G,DREB1F,ERF20,DREB1B,HAN1	OsDREB1G, OsERF025, OsERF#025, OsERF25, ERF25, AP2/EREBP#138, AP2/EREBP138, OsDREB1I,OsERF#027, OsERF027, OsERF27, ERF27, AP2/EREBP#081, AP2/EREBP81, OsDREB1F,OsERF#020, OsERF020, OsERF20, AP2/EREBP#126, AP2/EREBP126, OsDREB1G,OsDREB1B, ERF31, OsERF031, OsERF#031, OsERF31, AP2/EREBP#169, AP2/EREBP169, OsDREB1b, OsDREB1C, OsCBF1, CBF1,OsHAN1, OsCYP94B4, CYP94B4
46441	30760558	Ye M., Glauser G., Lou Y., Erb M., Hu L.	Molecular Dissection of Early Defense Signaling Underlying Volatile-Mediated Defense Regulation and Herbivore Resistance in Rice.	Plant Cell	31(3)	687-698	2019	OG1,AOC,MSRMK2,DSG1,LRR-RLK1,WRKY70,JAR1	OsOPR7, OPR7, OsOPR13, OsOPR3, OsOPR5, OsOPR9, OsOPR08-1,  OPR13, OPR3, OPR5, OPR9, OPR08-1, OsOPR8, OPR8,OsAOC, AOC1, OsAOC1, HB, CPM2, OsAOC4, AOC4,OsMSRMK2, OsMAPK5, OsMAP1, OsMPK3, OsBIMK1, OsMAPK2, MPK5, BIMK1, MAPK2, MAPK5, MPK3, OsMPK5, OsMAPK3, OsMAPK5b, MAPK3,OsMAPK6, MAPK6, OsMPK6, OsSIPK, SIPK, OsMAPK1, MAPK1, MPK1, OsMPK1, MPK6, OsDSG1,OsLRR-RLK1, OsPSKR12, PSKR12,OsWRKY70,OsJAR1, OsGH3.5, GH3.5, OsGH3-5, GH3-5
46442	30825599	Sahu J., Panda D., Baruah G., Patar L., Sen P., Borah B.K., Modi M.K.	Revealing shared differential co-expression profiles in rice infected by virus from reoviridae and sequiviridae group.	Gene	698	82-91	2019		
46443	30819931	Jin S., Zong Y., Gao Q., Zhu Z., Wang Y., Qin P., Liang C., Wang D., Qiu J.L., Zhang F., Gao C.	Cytosine, but not adenine, base editors induce genome-wide off-target mutations in rice.	Science	364(6437)	292-295	2019		
46444	30718437	Chang Y.M., Lin H.H., Liu W.Y., Yu C.P., Chen H.J., Wartini P.P., Kao Y.Y., Wu Y.H., Lin J.J., Lu M.J., Tu S.L., Wu S.H., Shiu S.H., Ku M.S.B., Li W.H.	Comparative transcriptomics method to infer gene coexpression networks and its applications to maize and rice leaf transcriptomes.	Proc. Natl. Acad. Sci. U.S.A.	116(8)	3091-3099	2019		
46445	30723146	Lin C.C., Chao Y.T., Chen W.C., Ho H.Y., Chou M.Y., Li Y.R., Wu Y.L., Yang H.A., Hsieh H., Lin C.S., Wu F.H., Chou S.J., Jen H.C., Huang Y.H., Irene D., Wu W.J., Wu J.L., Gibbs D.J., Ho M.C., Shih M.C.	Regulatory cascade involving transcriptional and N-end rule pathways in rice under submergence.	Proc. Natl. Acad. Sci. U.S.A.	116(8)	3300-3309	2019	ADH1,ERF67,_,_,SUB1A,ADH2,ERF66,Hb2,Hb1,PFK5	Adh1, Adh1/2, adh1/adh2, OsADH1,OsERF#067, OsERF067, OsERF67, AP2/EREBP#076, AP2/EREBP76,,,Sub1A, Sub1A-1, Sub1A-2, OsSUB1A,Adh2*, Adh2, OsADH2,OsERF#066, OsERF066, OsERF66, AP2/EREBP#030, AP2/EREBP30, EREBP30,HB2, OsHB2, OsNSHB2, hb2, GLB1b, ORYsa GLB1b, OsPgb1.2, Pgb1.2,HB1, OsHB1, GLB1A, rHb1, ORYsa GLB1a, nsHb1, OsNSHB1, hb1, nsHb, OsPgb1.1, Pgb1.1,OsPFK05, PFK05, OsPFK5, OsPFK2
46446	30796281	Zhao Y., Qiang C., Wang X., Chen Y., Deng J., Jiang C., Sun X., Chen H., Li J., Piao W., Zhu X., Zhang Z., Zhang H., Li Z., Li J.	New alleles for chlorophyll content and stay-green traits revealed by a genome wide association study in rice (Oryza sativa).	Sci Rep	9(1)	2541	2019	YGL138,SG1,NYC1,RFS,NOL,SSG4	YGL138(t), SRP54, OsSRP54, OscpSRP54a, cpSRP54a, PGL14, OsPGL1, PGL1,OsSG1, OsSG1-1, OsSG1-2, OsSG1-3, GSH1, OsGSH1,nyc1, OsNYC1,rfs, cul7, OsRFS, OsCHR729, CHR729, CHR4, OsCHR4, CRL6, OsCRL, OsCHR4/CHR729, PKR1, OsPHD32, PHD32,nol, NOL1, OsNOL, OsNOL1,OsSSG4
46447	30753903	Roy D., Chakrabarty J., Mallik R., Chaudhuri S.	Rice Trithorax factor ULTRAPETALA 1 (OsULT1) specifically binds to "GAGAG" sequence motif present in Polycomb response elements.	Biochim Biophys Acta Gene Regul Mech	1862(5)	582-597	2019		
46448	30730020	Kim J.H., Lim S.D., Jang C.S.	Oryza sativa heat-induced RING finger protein 1 (OsHIRP1) positively regulates plant response to heat stress.	Plant Mol. Biol.	99(6)	545-559	2019	ARK4,_,HIRP1	OsARK4,OS-PYDK, Ospdhk, PDHK, PDK, OsPDK, Ospdhk2, pdhk2 OsHRK1, HRK1,OsRFP, OsHIRP1, DLN82, OsDLN82, OsPHD14, PHD14,  OsRING365, RING365
46449	30778635	Wen J., Wang L., Wang J., Zeng Y., Xu Y., Li S.	The transcription factor OsbHLH138 regulates thermosensitive genic male sterility in rice via activation of tms5.	Theor. Appl. Genet.	132(6)	1721-1732	2019	UBL40-4,_,UBL40-1,TMS5,UBL40-2	UbL40-4, OsUbL40-4,OsbHLH138, bHLH138, OsPIF4, PIF4, OsSACL2, SACL2,UbL40-1, OsUbL40-1,TRZ1, OsTRZ1, OsaTRZ1, OsTMS5,UbL40-2, OsUbL40-2
46450	30771255	Ma J., Wang Y., Ma X., Meng L., Jing R., Wang F., Wang S., Cheng Z., Zhang X., Jiang L., Wang J., Wang J., Zhao Z., Guo X., Lin Q., Wu F., Zhu S., Wu C., Ren Y., Lei C., Zhai H., Wan J.	Disruption of gene SPL35, encoding a novel CUE domain-containing protein, leads to cell death and enhanced disease response in rice.	Plant Biotechnol. J.			2019	CNX,PR5,PR10A,DELTA-COP1 ,UBC5A,PAL1,SPL35,PR1B,CHS,PDIL1-1,BIP1,DELTA-COP2,AOS2	OsCNX, OsCNX1, CNX1,OsPR5, Pir2, PR-5, PR5-1,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,Delta-COP1,OsUBC5a, OsUBC14, UBC14,OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6,OsSPL35,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1, OsPR1a, PR1a,CHS*, Oschs, chs, chas, OsCHS, OsCHS1, CHS1, OsPKS26, PKS26, OsCHS24, CHS24, OsCHS27, CHS27,OsPDIL1;1, PDIL1;1, PDIL 1-1, PDI, OsPDIL1-1, OsTrx28, Trx28,OsBiP1, BiP1, BiP, Bip3, OsBiP3, BIP1/OsBIP3, OsMed37_2, Med37_2 ,Delta-COP2,OsAOS2, CYP74A2, OsAOS, OsAOS1
46451	31128693	Huang W., Nie H., Feng F., Wang J., Lu K., Fang Z.	Altered expression of OsNPF7.1 and OsNPF7.4 differentially regulates tillering and grain yield in rice.	Plant Sci.	283	23-31	2019		
46452	30940336	Lenka S.K., Singh A.K., Muthusamy S.K., Smita S., Chinnusamy V., Bansal K.C.	Heterologous expression of rice RNA-binding glycine-rich (RBG) gene OsRBGD3 in transgenic Arabidopsis thaliana confers cold stress tolerance.	Funct. Plant Biol.			2019	RBGD3,_	OsRBGD3,Osmyb7, myb7, OsMYB38, MYB38, Os2R_MYB28, 2R_MYB28
46453	30849693	Xie M.Y., Tian Z.H., Yang X.L., Liu B.H., Yang J., Lin H.H.	The role of OsNLA1 in regulating arsenate uptake and tolerance in rice.	J. Plant Physiol.	236	15-22	2019		
46454	30548752	Bai P., Park C.H., Shirsekar G., Songkumarn P., Bellizzi M., Wang G.L.	Role of lysine residues of the Magnaporthe oryzae effector AvrPiz-t in effector- and PAMP-triggered immunity.	Mol. Plant Pathol.	20(4)	599-608	2019	PAL1,APIP10,RAC1,NAC4,PIZT	OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6,OsAPIP10,  OsRING239, RING239,OsRAC1, OsRac1, Os Rac1, Rac1, Os-Rac1,OsNAC4, NAC68, ONAC068, OnNAC4*, OnNAC4, OsNAC4/ONAC068,Piz-t, Pi-zt, Pi-z(t), Pi2/Pizt, Pizt, Pi9, OsPiz-t
46455	30589140	Ren Y., Chen D., Li W., Zhou D., Luo T., Yuan G., Zeng J., Cao Y., He Z., Zou T., Deng Q., Wang S., Zheng A., Zhu J., Liang Y., Liu H., Wang L., Li P., Li S.	Osshoc1 and OsPTD1 are essential for crossover formation during rice meiosis.	Plant J.	98(2)	315-328	2019	SHOC1,PTD1	OsSHOC1,OsPTD1
46456	30705076	Tian J., Cao L., Chen X., Chen M., Zhang P., Cao L., Persson S., Zhang D., Yuan Z.	The OsJAZ1 degron modulates jasmonate signaling sensitivity during rice development.	Development	146(4)		2019	BHLH9,COI1B,EG2	OsbHLH009, bHLH009, OsMYC2, MYC2,OsCOI1b, COI1b, OsCOI1H, COI1H, OsFbox260, Fbox260, Os_F0646,  OsFBL23, FBL23, OsCOl-1, COl-1,OsTIFY3, OsJAZ10, OsJAZ 1, OsJAZ1, JAZ1, EG2/OsJAZ1, EG2, JAZ1/EG2
46457	30796564	Wang M., Yang D., Ma F., Zhu M., Shi Z., Miao X.	OsHLH61-OsbHLH96 influences rice defense to brown planthopper through regulating the pathogen-related genes.	Rice (N Y)	12(1)	9	2019	_,PR1-71,_,PR1A,_,PR10A,PR1-72,_,TIFY6A,BHLH44	PR1 ,OsPR1#071, OsPR1-71,OsPR5, PR5,OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1, OsPR1b, PR1alpha, OsPR1alpha,OsPR1b, PR1b,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsPR1#072, OsPR1-72, PR1L, OsPR1L, OsPRB1, PRB1,OsbHLH163, bHLH163, OsHLH61, HLH61,OsJAZ9, OsJAZ 3, OsJAZ3, JAZ9, JAZ3, OsTIFY6a,OsbHLH044, bHLH044, bHLH44, OsbHLH96, bHLH96, bHLH096
46458	30791211	Liu C.L., Gao Z.Y., Shang L.G., Yang C.H., Ruan B.P., Zeng D.L., Guo L.B., Zhao F.J., Huang C.F., Qian Q.	Natural variation in the promoter of OsHMA3 contributes to differential grain cadmium accumulation between Indica and Japonica rice.	J Integr Plant Biol			2019	GCC7	HMA3, OsHMA3, OsHMA3a, OsHMA3n, osHMA3, OsHMP34, HMP34
46459	31245762	Yamazaki S., Ochiai K., Matoh T.	Rice plants have three homologs of glutathione synthetase genes, one of which, <i>OsGS2</i>, codes for hydroxymethyl-glutathione synthetase.	Plant Direct	3(2)	e00119	2019	GS1 ,GS2,GS3	OsGS1, OsGS2, OsGSH2,OsGS2, OsGS,OsGS3
46460	30774020	Yamaguchi T., Yamakawa H., Nakata M., Kuroda M., Hakata M.	Suppression of Phospholipase D genes improves chalky grain production by high temperature during the grain-filling stage in rice.	Biosci. Biotechnol. Biochem.	83(6)	1102-1110	2019		
46461	30565833	Redillas MCFR., Bang S.W., Lee D.K., Kim Y.S., Jung H., Chung P.J., Suh J.W., Kim J.K.	Allantoin accumulation through overexpression of ureide permease1 improves rice growth under limited nitrogen conditions.	Plant Biotechnol. J.	17(7)	1289-1301	2019	ATASE3,GMPS1,ATIC,CBSIMPDH1,ASL,UPS1,ASS1,AIRS,ADSS,FGAMS,ATASE1,GART,GARS,AIRC,ATASE2	Atase3, OsATASE3,OsGMPS1,OsATIC,OsCBSIMPDH1, OsCBSIMPDH1a, OsCBSIMPDH1b, IMPDH, OsIMPDH,OsASL,OsUPS1,OsASS1,OsAIRS,OsAdSS, AdSS, ASS2, OsASS2,OsFGAMS,Atase1, OsATASE1,OsGART,OsGARS,OsAIRC,Atase2, OsATASE2
46462	30819116	Bernardino K.C., Pastina M.M., Menezes C.B., de Sousa SM., Maciel L.S., Carvalho G., Guimar?es CT., Barros B.A., da Costa E Silva L., Carneiro P.C.S., Schaffert R.E., Kochian L.V., Magalhaes J.V.	The genetic architecture of phosphorus efficiency in sorghum involves pleiotropic QTL for root morphology and grain yield under low phosphorus availability in the soil.	BMC Plant Biol.	19(1)	87	2019		
46463	30712129	Joo J., Lee Y.H., Song S.I.	OsbZIP42 is a positive regulator of ABA signaling and confers drought tolerance to rice.	Planta	249(5)	1521-1533	2019	RAB16A,BZIP42,PP2C6,SAPK4,LEA3-1	Rab16A, rab21, RAB21, OsRab21, OsRAB21, OsRAB-21, OsRab16A, OsLEA29, rab16A, OsRAB16A,OsbZIP42, OsABF7, ABF7, HBF1, DLN149, OsDLN149,OsPP2C06/OsABI2, OsPP2C06, OsPP2C6, OsABI2, OsPP10, ABI2, OsABIL1, ABIL1,OsSAPK4, OsSnRK2.4, SnRK2.4,OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3, OsLEA3A, LEA3A
46464	30758674	Ke S., Liu S., Luan X., Xie X.M., Hsieh T.F., Zhang X.Q.	Mutation in a putative glycosyltransferase-like gene causes programmed cell death and early leaf senescence in rice.	Rice (N Y)	12(1)	7	2019	SEC2,SLR1,PLS3,SPY,GID1,SEC1	OsSEC2,slr1-1, slr1, slr, GAI, OsGAI, OsSLR1, Os SLR1, OsRGA1, OsGRAS-18, OsGRAS-18, GRAS-18, GRAS18, SLR-1,OsPLS3, SPL21, spl21(t), OsSPL21, OsGCNT, GCNT, OsPSL, PSL, C2GNT1, OsC2GNT1,OsSPY,gid1, OsGID1, Thl, Os GID1,OsSEC1
46465	30734457	Dai Z., Tan J., Zhou C., Yang X., Yang F., Zhang S., Sun S., Miao X., Shi Z.	The OsmiR396-OsGRF8-OsF3H-flavonoid pathway mediates resistance to the brown planthopper in rice (Oryza sativa).	Plant Biotechnol. J.			2019	GRF3,GRF1,COI1B,GS2,2ODD2,GRF7,COI1,GRF8,MIR396B,GRF5,GRF6,MIR396A,GRF2,GRF12	OsGRF3,OsGRF1,OsCOI1b, COI1b, OsCOI1H, COI1H, OsFbox260, Fbox260, Os_F0646,  OsFBL23, FBL23, OsCOl-1, COl-1,OsGRF4, GRF4, GS2/OsGRF4, PT2, GLW2, GS2/GL2, LGS1, OsLGS1,FLS, 2-ODD2, Os2-ODD2, Os2ODD2, OsF3H, F3H, F3H2, OsF3H2, OsF3H03g, F3H03g, OsSAH1, SAH1, OsF3H1, F3H1,OsGRF7,OsCOI1a, OsCOI1, Os_F0728, COI1a, F0728,  OsFBL4, FBL4,OsGRF8,miR396b, osa-miR396b, osa-MIR396bosa-miR396b-3p osa-miR396b-5p, OsmiR396b,OsGRF5,OsGRF6,miR396a, osa-miR396a, osa-MIR396aosa-miR396a-3p osa-miR396a-5p, OsmiR396a,OsGRF2,OsGRF12
46466	30791202	Zhou Y., Zhou S., Wang L., Wu D., Cheng H., Du X., Mao D., Zhang C., Jiang X.	miR164c and miR168a regulate seed vigor in rice.	J Integr Plant Biol			2019	MIR164C,PM27,PSK3,AGO1C,MIR168A,NPF2.4	miR164c, osa-miR164c,OsPM27,OsPSK3, GREP2, OMT9, OsPSK5, PSK5,OsAGO1c, OsAGO1, AGO1, AGO1c,miR168a, osa-miR168a, osa-MIR168a osa-miR168a-3p osa-miR168a-5p, OsMIR168a,OsNPF2.4, OsPTR2, PTR2
46467	30387038	Liu Q., Yan S., Huang W., Yang J., Dong J., Zhang S., Zhao J., Yang T., Mao X., Zhu X., Liu B.	NAC transcription factor ONAC066 positively regulates disease resistance by suppressing the ABA signaling pathway in rice.	Plant Mol. Biol.	98(4-5)	289-302	2018	_	ONAC003, ONAC3, ONAC016, ONAC16, SNAC3, OsSND3, SND3, OsNAC006, NAC006, ONAC066
46468	30397229	Kitazumi A., Pabuayon I.C.M., Ohyanagi H., Fujita M., Osti B., Shenton M.R., Kakei Y., Nakamura Y., Brar D.S., Kurata N., de Los Reyes BG.	Potential of Oryza officinalis to augment the cold tolerance genetic mechanisms of Oryza sativa by network complementation.	Sci Rep	8(1)	16346	2018		
46469	30697122	Hu Z., Cao L., Sun X., Zhu Y., Zhang T., Jiang L., Liu Y., Dong S., Sun D., Yang J., He H., Luo X.	Fine mapping of a major quantitative trait locus, <i>qGNP7(t)</i>, controlling grain number per panicle in African rice (<i>Oryza glaberrima</i> S.).	Breed. Sci.	68(5)	606-613	2018		
46470	30512031	Yang R., Li J., Zhang H., Yang F., Wu Z., Zhuo X., An X., Cheng Z., Zeng Q., Luo Q.	Transcriptome Analysis and Functional Identification of <i>Xa13</i> and <i>Pi-ta</i> Orthologs in <i>Oryza granulata</i>.	Plant Genome	11(3)		2018		
46471	30496782	Sharma E., Jain M., Khurana J.P.	Differential quantitative regulation of specific gene groups and pathways under drought stress in rice.	Genomics			2018		
46472	30597788	Li J., Shu Y., Wang F., Wang J.	Effects of Cry1Ab-expressing Bt rice straw return on juvenile and adult Eisenia fetida.	Ecotoxicol. Environ. Saf.	169	881-893	2019		
46473	30403303	Lee K., Back K.	Melatonin-deficient rice plants show a common semidwarf phenotype either dependent or independent of brassinosteroid biosynthesis.	J. Pineal Res.	66(2)	e12537	2019		
46474	30459081	Wang D., Fahad S., Saud S., Kamran M., Khan A., Khan M.N., Hammad H.M., Nasim W.	Morphological acclimation to agronomic manipulation in leaf dispersion and orientation to promote "Ideotype" breeding: Evidence from 3D visual modeling of "super" rice (Oryza sativa L.).	Plant Physiol. Biochem.	135	499-510	2019		
46475	30498958	Hamam A.M., Coskun D., Britto D.T., Plett D., Kronzucker H.J.	Plasma-membrane electrical responses to salt and osmotic gradients contradict radiotracer kinetics, and reveal Na+-transport dynamics in rice (Oryza sativa L.).	Planta	249(4)	1037-1051	2019		
46476	30555350	Wang Y., Ju D., Yang X., Ma D., Wang X.	Comparative Transcriptome Analysis Between Resistant and Susceptible Rice Cultivars Responding to Striped Stem Borer (SSB), <i>Chilo suppressalis</i> (Walker) Infestation.	Front Physiol	9	1717	2018		
46477	30510556	Poli Y., Nallamothu V., Balakrishnan D., Ramesh P., Desiraju S., Mangrauthia S.K., Voleti S.R., Neelamraju S.	Increased Catalase Activity and Maintenance of Photosystem II Distinguishes High-Yield Mutants From Low-Yield Mutants of Rice var. Nagina22 Under Low-Phosphorus Stress.	Front Plant Sci	9	1543	2018		
46478	30391752	Nakamura H., Hirabayashi K., Miyakawa T., Kikuzato K., Hu W., Xu Y., Jiang K., Takahashi I., Niiyama R., Dohmae N., Tanokura M., Asami T.	Triazole Ureas Covalently Bind to Strigolactone Receptor and Antagonize Strigolactone Responses.	Mol Plant	12(1)	44-58	2019		
46479	30410573	Li F., Liu S., Xu H., Xu Q.	A novel FC17/CESA4 mutation causes increased biomass saccharification and lodging resistance by remodeling cell wall in rice.	Biotechnol Biofuels	11	298	2018	BC12,IRX14,BC6,IRX10,BC7,CESA7	bc12, gdd, GDD1, BC12/GDD1, OsGDD1, OsBC12/GDD1, OsBC12, LGW, OsLGW,OsIRX14, OsGT43J, GT43J, OsGT43J/OsIRX14,Bc6*, Bc6, OsCesA9, CESA9, OsCESA9, OS_CESA09, OsCesA 9, CesA9, BC88, SDBC1, OsSDBC1,OsIRX10, OsIRX10L, IRX10L,OsCesA4, OsCESA4, CESA4, OS_CESA04, BC11, bc7t, Bc7(t), bc-7, OsCesA 4, CesA4, FC17/CESA4, FC17, OsFC17,OsCesA7, OsCESA7, OS_CESA07, OsCesA 7, CesA7
46480	30497415	Peethambaran P.K., Glenz R., H?ninger S., Shahinul Islam SM., Hummel S., Harter K., Kolukisaoglu ?., Meynard D., Guiderdoni E., Nick P., Riemann M.	Salt-inducible expression of OsJAZ8 improves resilience against salt-stress.	BMC Plant Biol.	18(1)	311	2018		
46481	30423990	Zhang C., Shinwari K.I., Luo L., Zheng L.	<i>OsYSL13</i> Is Involved in Iron Distribution in Rice.	Int J Mol Sci	19(11)		2018		
46482	30697111	Liu S., Huang Y., Xu H., Zhao M., Xu Q., Li F.	Genetic enhancement of lodging resistance in rice due to the key cell wall polymer lignin, which affects stem characteristics.	Breed. Sci.	68(5)	508-515	2018		
46483	30499385	Li Y., Wang W., Wang T., Wouters M.A., Yin Y., Jiao Z., Ma L., Zhang F.	Regulation through MicroRNAs in Response to Low-Energy N+ Ion Irradiation in Oryza sativa.	Radiat. Res.	191(2)	189-200	2019		
46484	30427875	Ran Y., Chen H., Ruan D., Liu H., Wang S., Tang X., Wu W.	Identification of factors affecting rice yield gap in southwest China: An experimental study.	PLoS ONE	13(11)	e0206479	2018		
46485	30477211	Ng D.W., Abeysinghe J.K., Kamali M.	Regulating the Regulators: The Control of Transcription Factors in Plant Defense Signaling.	Int J Mol Sci	19(12)		2018		
46486	30697112	Li J., Zhou J., Xu P., Deng X., Deng W., Zhang Y., Yang Y., Tao D.	Mapping five novel interspecific hybrid sterility loci between <i>Oryza sativa</i> and <i>Oryza meridionalis</i>.	Breed. Sci.	68(5)	516-523	2018	S53,S54,S51,S55,S52	S53(t),S54(t),S51(t),S55(t),S52(t)
46487	30597791	Yin H., Qi Z., Li M., Ahammed G.J., Chu X., Zhou J.	Selenium forms and methods of application differentially modulate plant growth, photosynthesis, stress tolerance, selenium content and speciation in Oryza sativa L.	Ecotoxicol. Environ. Saf.	169	911-917	2019		
46488	30458395	Shan S., Guo Z., Lei P., Wang Y., Li Y., Cheng W., Zhang M., Wu S., Yi H.	Simultaneous mitigation of tissue cadmium and lead accumulation in rice via sulfate-reducing bacterium.	Ecotoxicol. Environ. Saf.	169	292-300	2019		
46489	30483230	Carpenter S.C.D., Mishra P., Ghoshal C., Dash P.K., Wang L., Midha S., Laha G.S., Lore J.S., Kositratana W., Singh N.K., Singh K., Patil P.B., Oliva R., Patarapuwadol S., Bogdanove A.J., Rai R.	A Strain of an Emerging Indian <i>Xanthomonas oryzae</i> pv. oryzae Pathotype Defeats the Rice Bacterial Blight Resistance Gene <i>xa13</i> Without Inducing a Clade III <i>SWEET</i> Gene and Is Nearly Identical to a Recent Thai Isolate.	Front Microbiol	9	2703	2018		
46490	30465288	Zhao J., Yang W., Zhang S., Yang T., Liu Q., Dong J., Fu H., Mao X., Liu B.	Genome-wide association study and candidate gene analysis of rice cadmium accumulation in grain in a diverse rice collection.	Rice (N Y)	11(1)	61	2018	NRAMP2	OsNramp2, OsNRAMP2
46491	30463331	Chen M., Yang Z., Liu J., Zhu T., Wei X., Fan H., Wang B.	Adaptation Mechanism of Salt Excluders under Saline Conditions and Its Applications.	Int J Mol Sci	19(11)		2018		
46492	30524455	Peng Y., Hou F., Bai Q., Xu P., Liao Y., Zhang H., Gu C., Deng X., Wu T., Chen X., Ali A., Wu X.	Rice calcineurin B-like protein-interacting protein kinase 31 (OsCIPK31) Is Involved in the Development of Panicle Apical Spikelets.	Front Plant Sci	9	1661	2018		
46493	30956424	Kumari R., Kumar P., Sharma V.K., Kumar H.	Seedling stage salt stress response specific characterization of genetic polymorphism and validation of SSR markers in rice.	Physiol Mol Biol Plants	25(2)	407-419	2019		
46494	30498660	Wang T., Song H., Zhang B., Lu Q., Liu Z., Zhang S., Guo R., Wang C., Zhao Z., Liu J., Peng R.	Genome-wide identification, characterization, and expression analysis of superoxide dismutase (SOD) genes in foxtail millet (<i>Setaria italica</i> L.).	3 Biotech	8(12)	486	2018		
46495	30642467	Banik A., Dash G.K., Swain P., Kumar U., Mukhopadhyay S.K., Dangar T.K.	Application of rice (Oryza sativa L.) root endophytic diazotrophic Azotobacter sp. strain Avi2 (MCC 3432) can increase rice yield under green house and field condition.	Microbiol. Res.	219	56-65	2019		
46496	30032266	Tabara M., Ohtani M., Kanekatsu M., Moriyama H., Fukuhara T.	Size Distribution of Small Interfering RNAs in Various Organs at Different Developmental Stages is Primarily Determined by the Dicing Activity of Dicer-Like Proteins in Plants.	Plant Cell Physiol.	59(11)	2228-2238	2018		
46497	30444467	Chen X., Jia Y., Wu B.M.	Evaluation of Rice Responses to the Blast Fungus Magnaporthe oryzae at Different Growth Stages.	Plant Dis.	103(1)	132-136	2019		
46498	30345786	Ju X.G., Zhang Y., Lian F.Y., Fu M.X.	Quick Test for Transgenic Components in Rice Using Terahertz Spectra.	Appl Spectrosc	73(2)	171-181	2019		
46499	30299556	Ye T., Yin X., Yu L., Zheng S.J., Cai W.J., Wu Y., Feng Y.Q.	Metabolic analysis of the melatonin biosynthesis pathway using chemical labeling coupled with liquid chromatography-mass spectrometry.	J. Pineal Res.	66(1)	e12531	2019		
46500	30465094	Saika H., Mori A., Endo M., Toki S.	Targeted deletion of rice retrotransposon Tos17 via CRISPR/Cas9.	Plant Cell Rep.	38(4)	455-458	2019		
46501	30393420	Horgan F.G., Bernal C.C., Vu Q., Almazan M.L.P., Ramal A.F., Yasui H., Fujita D.	Virulence adaptation in a rice leafhopper: Exposure to ineffective genes compromises pyramided resistance.	Crop Prot.	113	40-47	2018		
46502	30497392	Zhang H., Ali A., Hou F., Wu T., Guo D., Zeng X., Wang F., Zhao H., Chen X., Xu P., Wu X.	Effects of ploidy variation on promoter DNA methylation and gene expression in rice (Oryza sativa L.).	BMC Plant Biol.	18(1)	314	2018		
46503	30473723	Kanaoka Y., Kuniyoshi D., Inada E., Koide Y., Okamoto Y., Yasui H., Kishima Y.	Anther culture in rice proportionally rescues microspores according to gametophytic gene effect and enhances genetic study of hybrid sterility.	Plant Methods	14	102	2018	S37,_,S20,S3,S33,S19,S29,S34,S21,S39,S1,S38,S18	S37(t),S36(t),S20*, Hst43,,S33(t),,S29(t),S34(t) ,S21*, Hst44,S39(t),,S38(t),S18*, Hst39
46504	30499032	Cao P., Ren Y., Liu X., Zhang T., Zhang P., Xiao L., Zhang F., Liu S., Jiang L., Wan J.	Purine nucleotide biosynthetic gene GARS controls early chloroplast development in rice (Oryza sativa L.).	Plant Cell Rep.	38(2)	183-194	2019		
46505	30426495	Beier M.P., Fujita T., Sasaki K., Kanno K., Ohashi M., Tamura W., Konishi N., Saito M., Imagawa F., Ishiyama K., Miyao A., Yamaya T., Kojima S.	The urea transporter DUR3 contributes to rice production under nitrogen-deficient and field conditions.	Physiol Plant			2018	DUR3	OsDUR3 
46506	30804641	Tung Y.H., Ng L.T.	Effects of nitrogen fertilization rate on tocopherols, tocotrienols and gamma-oryzanol contents and enzymatic antioxidant activities in rice grains.	Physiol Mol Biol Plants	25(1)	189-195	2019		
46507	30483281	Li Q., Liu X., Zhang C., Jiang L., Jiang M., Zhong M., Fan X., Gu M., Liu Q.	Rice Soluble Starch Synthase I: Allelic Variation, Expression, Function, and Interaction With <i>Waxy</i>.	Front Plant Sci	9	1591	2018		
46508	30194091	Ogawa D., Nonoue Y., Tsunematsu H., Kanno N., Yamamoto T., Yonemaru J.I.	Discovery of QTL Alleles for grain shape in the JAPAN-MAGIC Rice Population Using Haplotype Information.	G3 (Bethesda)	8(11)	3559-3565	2018		
46509	30450718	Tian P., Liu J., Mou C., Shi C., Zhang H., Zhao Z., Lin Q., Wang J., Wang J., Zhang X., Guo X., Cheng Z., Zhu S., Ren Y., Lei C., Wang H., Wan J.	GW5-Like, a homolog of GW5, negatively regulates grain width, weight and salt resistance in rice.	J Integr Plant Biol			2018	GW5L	OsGW5L
46510	30251262	Wu X., Ding C., Baerson S.R., Lian F., Lin X., Zhang L., Wu C., Hwang S.Y., Zeng R., Song Y.	The roles of jasmonate signalling in nitrogen uptake and allocation in rice (Oryza sativa L.).	Plant Cell Environ.	42(2)	659-672	2019		
46511	30519255	Cao J., Zhang M., Xiao J., Li X., Yuan M., Wang S.	Dominant and Recessive Major <i>R</i> Genes Lead to Different Types of Host Cell Death During Resistance to <i>Xanthomonas oryzae</i> in Rice.	Front Plant Sci	9	1711	2018		
46512	30404212	Hu Z., Cheng Y., Suzuki N., Guo X., Xiong H., Ogra Y.	Speciation of Selenium in Brown Rice Fertilized with Selenite and Effects of Selenium Fertilization on Rice Proteins.	Int J Mol Sci	19(11)		2018		
46513	30532759	Chamara B.S., Marambe B., Kumar V., Ismail A.M., Septiningsih E.M., Chauhan B.S.	Optimizing Sowing and Flooding Depth for Anaerobic Germination-Tolerant Genotypes to Enhance Crop Establishment, Early Growth, and Weed Management in Dry-Seeded Rice (<i>Oryza sativa</i> L.).	Front Plant Sci	9	1654	2018		
46514	30628245	Lin X.B., Zhou L.J., Wang H.M., Liu H., Wu L., Yu Y., Hu M., He B., Zhou Q.H., Huang Q.R.	[Accumulation of Heavy Metals in Different Rice Varieties].	Huan Jing Ke Xue	39(11)	5198-5206	2018		
46515	30804632	?elik ?., ?ak?r BC., Atak ?.	Identification of the antioxidant defense genes which may provide enhanced salt tolerance in <i>Oryza sativa</i> L.	Physiol Mol Biol Plants	25(1)	85-99	2019		
46516	30423513	Qingqing H., Yiyun L., Xu Q., Lijie Z., Xuefeng L., Yingming X.	Selenite mitigates cadmium-induced oxidative stress and affects Cd uptake in rice seedlings under different water management systems.	Ecotoxicol. Environ. Saf.	168	486-494	2019		
46517	30386935	Zhu X., Yu L., Zhang M., Xu Z., Yao Z., Wu Q., Du X., Li J.	Design, synthesis and biological activity of hydroxybenzoic acid ester conjugates of phenazine-1-carboxylic acid.	Chem Cent J	12(1)	111	2018		
46518	30524456	Scafaro A.P., Atwell B.J., Muylaert S., Reusel B.V., Ruiz G.A., Rie J.V., Gall? A.	A Thermotolerant Variant of Rubisco activase From a Wild Relative Improves Growth and Seed Yield in Rice Under Heat Stress.	Front Plant Sci	9	1663	2018		
46519	30347433	Ivanov S., Harrison M.J.	Accumulation of phosphoinositides in distinct regions of the periarbuscular membrane.	New Phytol.	221(4)	2213-2227	2019		
46520	30465251	Wang X., Fu X., Yan J., Wang A., Wang M., Chen M., Yang C., Song Y.	Design and synthesis of novel 2-(6-thioxo-1,3,5-thiadiazinan-3-yl)-N'-phenylacethydrazide derivatives as potential fungicides.	Mol. Divers.			2018		
46521	30410018	Roth R., Chiapello M., Montero H., Gehrig P., Grossmann J., O'Holleran K., Hartken D., Walters F., Yang S.Y., Hillmer S., Schumacher K., Bowden S., Craze M., Wallington E.J., Miyao A., Sawers R., Martinoia E., Paszkowski U.	A rice Serine/Threonine receptor-like kinase regulates arbuscular mycorrhizal symbiosis at the peri-arbuscular membrane.	Nat Commun	9(1)	4677	2018		
46522	30429528	Gu X.Y., Pipatpongpinyo W., Zhang L., Zhou Y., Ye H., Feng J.	Two Contrasting Patterns and Underlying Genes for Coadaptation of seed dormancy and flowering time in Rice.	Sci Rep	8(1)	16813	2018		
46523	30465064	Qin G., Nguyen H.M., Luu S.N., Wang Y., Zhang Z.	Construction of introgression lines of Oryza rufipogon and evaluation of important agronomic traits.	Theor. Appl. Genet.	132(2)	543-553	2019		
46524	30504850	Letuma P., Arafat Y., Waqas M., Lin F., Lin W., Zhang Y., Masita M., Fan K., Li Z., Lin W.	Gene mutation associated with esl mediates shifts on fungal community composition in rhizosphere soil of rice at grain-filling stage.	Sci Rep	8(1)	17521	2018		
46525	30503791	Liu H., Chen X., Song L., Li K., Zhang X., Liu S., Qin Y., Li P.	Polysaccharides from Grateloupia filicina enhance tolerance of rice seeds (Oryza sativa L.) under salt stress.	Int. J. Biol. Macromol.	124	1197-1204	2019		
46526	30275171	Huang Z., Kelly S., Matsuo R., Li L.F., Li Y., Olsen K.M., Jia Y., Caicedo A.L.	The Role of Standing Variation in the Evolution of Weedines Traits in South Asian Weedy Rice (<i>Oryza</i> spp.).	G3 (Bethesda)	8(11)	3679-3690	2018		
46527	30507965	Ma Y., Yang X., Huan X., Gao Y., Wang W., Li Z., Ma Z., Perry L., Sun G., Jiang L., Jin G., Lu H.	Multiple indicators of rice remains and the process of rice domestication: A case study in the lower Yangtze River region, China.	PLoS ONE	13(12)	e0208104	2018		
46528	30656201	Wu Y., Mirzaei M., Atwell B.J., Haynes P.A.	Label-free and isobaric tandem mass tag (TMT) multiplexed quantitative proteomic data of two contrasting rice cultivars exposed to drought stress and recovery.	Data Brief	22	697-702	2019		
46529	30531945	Xiang H., Okamura H., Kezuka Y., Katoh E.	Physical and thermodynamic characterization of the rice gibberellin receptor/gibberellin/DELLA protein complex.	Sci Rep	8(1)	17719	2018		
46530	30622552	Jin J., Long W., Wang L., Liu X., Pan G., Xiang W., Li N., Li S.	QTL Mapping of Seed Vigor of Backcross Inbred Lines Derived From <i>Oryza longistaminata</i> Under Artificial Aging.	Front Plant Sci	9	1909	2018		
46531	30517137	F?vero Peixoto-Junior R., Mara de Andrade L., Dos Santos Brito M., Macedo Nobile P., Palma Boer Martins A., Domingues Carlin S., Vasconcelos Ribeiro R., de Souza Goldman MH., Neb? Carlos de Oliveira JF., Vargas de Oliveira Figueira A., Creste S.	Overexpression of ScMYBAS1 alternative splicing transcripts differentially impacts biomass accumulation and drought tolerance in rice transgenic plants.	PLoS ONE	13(12)	e0207534	2018		
46532	30577553	Su H., Chu Y., Bai J., Gong L., Huang J., Xu W., Zhang J., Qiu X., Xu J., Huang Z.	Genome-Wide Identification and Comparative Analysis for OPT Family Genes in <i>Panax ginseng</i> and Eleven Flowering Plants.	Molecules	24(1)		2018		
46533	30594151	Zhang Y., Fang J., Wu X., Dong L.	Na+/K+ Balance and Transport Regulatory Mechanisms in Weedy and Cultivated Rice (Oryza sativa L.) Under Salt Stress.	BMC Plant Biol.	18(1)	375	2018		
46534	30536828	Zhang J., Lu Z., Pan Y., Ren T., Cong R., Lu J., Li X.	Potassium deficiency aggravates yield loss in rice by restricting the translocation of non-structural carbohydrates under Sarocladium oryzae infection condition.	Physiol Plant			2018		
46535	30544094	E Y., Meng J., Hu H., Cheng D., Zhu C., Chen W.	Effects of organic molecules from biochar-extracted liquor on the growth of rice seedlings.	Ecotoxicol. Environ. Saf.	170	338-345	2019		
46536	30602689	Luo L., Qin R., Liu T., Yu M., Yang T., Xu G.	<i>OsASN1</i> Plays a Critical Role in Asparagine-Dependent Rice Development.	Int J Mol Sci	20(1)		2018		
46537	30619433	Ulfstedt M., Hu G.Z., Eklund D.M., Ronne H.	The Ability of a Charophyte Alga Hexokinase to Restore Glucose Signaling and Glucose Repression of Gene Expression in a Glucose-Insensitive <i>Arabidopsis</i> Hexokinase Mutant Depends on Its Catalytic Activity.	Front Plant Sci	9	1887	2018		
46538	30514218	Ding Y., Wang Z., Ren M., Zhang P., Li Z., Chen S., Ge C., Wang Y.	Iron and callose homeostatic regulation in rice roots under low phosphorus.	BMC Plant Biol.	18(1)	326	2018		
46539	30592999	Okpala N.E., Mo Z., Duan M., Tang X.	The genetics and biosynthesis of 2-acetyl-1-pyrroline in fragrant rice.	Plant Physiol. Biochem.	135	272-276	2019		
46540	30567971	van der Horst S., Snel B., Hanson J., Smeekens S.	Novel pipeline identifies new upstream ORFs and non-AUG initiating main ORFs with conserved amino acid sequences in the 5' leader of mRNAs in <i>Arabidopsis thaliana</i>.	RNA	25(3)	292-304	2019		
46541	30581451	Crofts N., Iizuka Y., Abe N., Miura S., Kikuchi K., Matsushima R., Fujita N.	Rice Mutants Lacking Starch Synthase I or Branching Enzyme IIb Activity Altered Starch Biosynthetic Protein Complexes.	Front Plant Sci	9	1817	2018		
46542	30595833	Zhao Y., Zhong L., Zhou K., Song Z., Chen J., Rong J.	Seed characteristic variations and genetic structure of wild <i>Zizania latifolia</i> along a latitudinal gradient in China: implications for neo-domestication as a grain crop.	AoB Plants	10(6)	ply072	2018		
46543	30514878	Islam S.M.M., Gaihre Y.K., Biswas J.C., Singh U., Ahmed M.N., Sanabria J., Saleque M.A.	Nitrous oxide and nitric oxide emissions from lowland rice cultivation with urea deep placement and alternate wetting and drying irrigation.	Sci Rep	8(1)	17623	2018		
46544	30168780	Rao W., Zheng X., Liu B., Guo Q., Guo J., Wu Y., Shangguan X., Wang H., Wu D., Wang Z., Hu L., Xu C., Jiang W., Huang J., Shi S., He G.	Secretome Analysis and In Planta Expression of Salivary Proteins Identify Candidate Effectors from the Brown Planthopper Nilaparvata lugens.	Mol. Plant Microbe Interact.	32(2)	227-239	2019		
46545	30160362	Miao J., Yang Z., Zhang D., Wang Y., Xu M., Zhou L., Wang J., Wu S., Yao Y., Du X., Gu F., Gong Z., Gu M., Liang G., Zhou Y.	Mutation of RGG2, which encodes a type B heterotrimeric G protein gamma subunit, increases grain size.and yield production in rice.	Plant Biotechnol. J.	17(3)	650-664	2019	RGB1,RGG2	OsWD40-80, RGbeta1, OsRGB1,  OsDWD38, DWD38,OsRGG2
46546	30584948	Xia H., Luo Z., Xiong J., Ma X., Lou Q., Wei H., Qiu J., Yang H., Liu G., Fan L., Chen L., Luo L.	Bi-directional Selection in Upland Rice Leads to Its Adaptive Differentiation from Lowland Rice in Drought Resistance and Productivity.	Mol Plant	12(2)	170-184	2019		
46547	30658287	Das P., Manna I., Sil P., Bandyopadhyay M., Biswas A.K.	Exogenous silicon alters organic acid production and enzymatic activity of TCA cycle in two NaCl stressed indica rice cultivars.	Plant Physiol. Biochem.	136	76-91	2019		
46548	30559100	Xin G.W., Hu X.X., Wang K.J., Wang X.C.	[Cas9 protein variant VQR recognizes NGAC protospacer adjacent motif in rice].	Yi Chuan	40(12)	1112-1119	2018		
46549	30553449	Hui S., Hao M., Liu H., Xiao J., Li X., Yuan M., Wang S.	The group I GH3 family genes encoding JA-Ile synthetase act as positive regulator in the resistance of rice to Xanthomonas oryzae pv. oryzae.	Biochem. Biophys. Res. Commun.	508(4)	1062-1066	2019		
46550	30619416	Kim Y.S., Kim J.J., Park S.I., Diamond S., Boyd J.S., Taton A., Kim I.S., Golden J.W., Yoon H.S.	Expression of <i>OsTPX</i> Gene Improves Cellular Redox Homeostasis and Photosynthesis Efficiency in <i>Synechococcus elongatus</i> PCC 7942.	Front Plant Sci	9	1848	2018		
46551	30578452	Yichie Y., Brien C., Berger B., Roberts T.H., Atwell B.J.	Salinity tolerance in Australian wild Oryza species varies widely and matches that observed in O. sativa.	Rice (N Y)	11(1)	66	2018		
46552	30558149	Liu T., Liu X., Liu M., Wu L.	Classification of Rice Heavy Metal Stress Levels Based on Phenological Characteristics Using Remote Sensing Time-Series Images and Data Mining Algorithms.	Sensors (Basel)	18(12)		2018		
46553	30568666	Begcy K., Sandhu J., Walia H.	Transient Heat Stress During Early Seed Development Primes Germination and Seedling Establishment in Rice.	Front Plant Sci	9	1768	2018		
46554	30541444	Li Y., Li X., Fu D., Wu C.	Panicle Morphology Mutant 1 (PMM1) determines the inflorescence architecture of rice by controlling brassinosteroid biosynthesis.	BMC Plant Biol.	18(1)	348	2018	D61,DWARF4,MCM2,MCM3,LAX1,BU1,MADS47,D11	d61*, dwf42, d61, OsBRI1, OSBRI1, BRI1, Os BRI1, Osbri1, OsBRKq1, BRKq1,OsDWARF4, osdwarf4, OsDWF4, DWF4, CYP90B2, OsCYP90B2, D4, OsD4,OsMCM2,OsMCM3,lax, lax(lx), lx, OsbHLH123, bHLH123, OsLAX1, BOS1, OsBOS1,ILI4, OsILI4 , OsBU1, BU1/ILI4, OsbHLH172, bHLH172,OsMADS47, OsMDP1, MDP, MDP1,d11(d8), dwf10, d8, D11/CYP724B1, d11, CYP724B1, GNS4, OsD11, PMM1, OsPMM1, PMM1/D11, NBG4, OsCPB1, CPB1, CPB1/D11
46555	30521000	Kuang Z., Wang Y., Li L., Yang X.	miRDeep-P2: accurate and fast analysis of the microRNA transcriptome in plants.	Bioinformatics			2018		
46556	30560465	Cobb J.N., Biswas P.S., Platten J.D.	Back to the future: revisiting MAS as a tool for modern plant breeding.	Theor. Appl. Genet.	132(3)	647-667	2019		
46557	30546027	Hamid Y., Tang L., Wang X., Hussain B., Yaseen M., Aziz M.Z., Yang X.	Immobilization of cadmium and lead in contaminated paddy field using inorganic and organic additives.	Sci Rep	8(1)	17839	2018		
46558	30417595	Jia X., Zhang Y., Zhang Q., Zhao Q., Traw M.B., Wang L., Tian D., Wang C., Yang S.	High-resolution insight into recombination events at the SD1 locus in rice.	Plant J.	97(4)	683-692	2019		
46559	30581670	Caddell D.F., Wei T., Sharma S., Oh M.H., Park C.J., Canlas P., Huber S.C., Ronald P.C.	Four tyrosine residues of the rice immune receptor XA21 are not required for interaction with the co-receptor OsSERK2 or resistance to <i>Xanthomonas oryzae</i> pv. <i>oryzae</i>.	PeerJ	6	e6074	2018		
46560	30697406	Ullah Zaid I., Tang W., He J., Ullah Khan S., Hong D.	Association analysis uncovers the genetic basis of general combining ability of 11 yield-related traits in parents of hybrid rice.	AoB Plants	11(1)	ply077	2019		
46561	30519841	Zhang L., Nakagomi Y., Endo T., Teranishi M., Hidema J., Sato S., Higashitani A.	Divergent evolution of rice blast resistance Pi54 locus in the genus Oryza.	Rice (N Y)	11(1)	63	2018		
46562	30631334	Fukuda A., Hirose T., Aoki N., Kondo S., Yonekura M., Kataoka T., Ohto C., Nagano A.J.	Selection of Transcripts Affecting Initial Growth Rate of Rice Backcrossed Inbred Lines Using RNA Sequencing Data.	Front Plant Sci	9	1880	2018		
46563	30561011	Xiong Q.Q., Shen T.H., Zhong L., Zhu C.L., Peng X.S., He X.P., Fu J.R., Ouyang L.J., Bian J.M., Hu L.F., Sun X.T., Xu J., Zhou H.Y., He H.H., Chen X.R.	Comprehensive metabolomic, proteomic and physiological analyses of grain yield reduction in rice under abrupt drought-flood alternation stress.	Physiol Plant			2018		
46564	30622674	Subedi L., Baek S.H., Kim S.Y.	Genetically Engineered Resveratrol-Enriched Rice Inhibits Neuroinflammation in Lipopolysaccharide-Activated BV2 Microglia Via Downregulating mitogen-activated protein kinase-nuclear factor kappa B Signaling Pathway.	Oxid Med Cell Longev	2018	8092713	2018		
46565	31007364	Radanielson A.M., Gaydon D.S., Rahman Khan MM., Chaki A.K., Rahman M.A., Angeles O., Li T., Ismail A.	Varietal improvement options for higher rice productivity in salt affected areas using crop modelling.	Field Crops Res.	229	27-36	2018		
46566	30584728	DU YD., Shen P., Wang H., Tang X.R., Zhao H.	Impacts of climate change on climatic division for double cropping rice in Guangdong Pro-vince, China.	Ying Yong Sheng Tai Xue Bao	29(12)	4013-4021	2018		
46567	30599198	Dang Y., Liu M., Wu X.	Recombinant rice xylanase-inhibiting protein inhibits GH11 endo-xylanases through competitive inhibition.	Protein Expr. Purif.	156	17-24	2019		
46568	30578469	Lin H.A., Chen S.Y., Chang F.Y., Tung C.W., Chen Y.C., Shen W.C., Chen R.S., Wu C.W., Chung C.L.	Genome-wide association study of rice genes and loci conferring resistance to Magnaporthe oryzae isolates from Taiwan.	Botanical Studies	59(1)	32	2018		
46569	30584730	Huang X.C., Li Y., Ye Z.C., Bai Y.J., Liu Y.L., Zhang Y.R., Zhang W.A., Jiang T.M.	Occurrence characteristics of Echinochloa and its response to long-term fertilization in paddy fields of yellow soil.	Ying Yong Sheng Tai Xue Bao	29(12)	4029-4036	2018		
46570	30824055	Elakhdar A., Ushijima T., Fukuda M., Yamashiro N., Kawagoe Y., Kumamaru T.	eukaryotic peptide chain release factor 1 participates in translation termination of specific cysteine-poor prolamines in rice endosperm.	Plant Sci.	281	223-231	2019	ESP1	esp1(rsp1), rsp1, esp1, OsESP1, ESP1/eRF1, eRF1, OseRF1
46571	30622550	Harun-Or-Rashid M., Kim H.J., Yeom S.I., Yu H.A., Manir M.M., Moon S.S., Kang Y.J., Chung Y.R.	<i>Bacillus velezensis</i> YC7010 Enhances Plant Defenses Against Brown Planthopper Through Transcriptomic and Metabolic Changes in Rice.	Front Plant Sci	9	1904	2018		
46572	30165687	Xing Y., Guo S., Chen X., Du D., Liu M., Xiao Y., Zhang T., Zhu M., Zhang Y., Sang X., He G., Wang N.	Nitrogen Metabolism is Affected in the Nitrogen-Deficient Rice Mutant ESL4 with a Calcium-Dependent Protein Kinase Gene Mutation.	Plant Cell Physiol.	59(12)	2512-2525	2018	NAC58,GLN1;2,ICL,SGR,NOL,ESL4	OsNAP, NAP, ONAC058, ONAC58, Os PS1, PS1, OsCTb1, CTb1,OsGLN1;2, GSr, RGS8, OsGS1;2, GS1;2, GS1, OsGS1-2, GS1-2, OsGS1.2, GS1.2,OsEnS-107, EnS-107, OsI85, I85, OsICL, Osl85, l43, Osl43, OsL85,sgr(t), sgr, OsSGR, OsSgr, SGR1, OsSGR1,nol, NOL1, OsNOL, OsNOL1,CDPK12, OsCDPK12, OsCPK12, CPK12, OsESL4
46573	30558185	Zou X., Shao J., Wang Q., Chen P., Zhu Y., Yin C.	Supraoptimal Cytokinin Content Inhibits Rice seminal root Growth by Reducing root meristem Size and Cell Length via Increased Ethylene Content.	Int J Mol Sci	19(12)		2018		
46574	30603810	Ma X., Zhang J., Han B., Tang J., Cui D., Han L.	FLA, which encodes a homolog of UBP, is required for chlorophyll accumulation and development of lemma and palea in rice.	Plant Cell Rep.	38(3)	321-331	2019	UBP7-5,UBP11,UBP4-2,UBP2-3,UBP8,UBP1-4,UBP3,UBP2-2,UBP1-5,UBP7-2,LMP1,UBP12,UBP1-2,_,UBP7-3,UBP9-1,UBP4-8,UBP9-2,UBP5-3,UBP6,UBP1-7,UBP2-1,UBP7-7,UBP14-2,UBP7-6,FLA,SPO11-5,UBP4-4,UBP1-1,UBP1-8,_,LG1,_,UBP4-6,_	OsUBP7-5, OsUBP19, UBP19,OsUBP11, OsUBP26, UBP26,OsUBP4-2, OsUBP10, UBP10,OsUBP2-3, OsUBP3, UBP3,OsUBP8, OsUBP20, UBP20,OsUBP1-4, OsUBP2, UBP2,OsUBP3, OsUBP6, UBP6,OsUBP2-2, OsUBP4, UBP4,OsUBP1-5, OsUBP31, UBP31,OsUBP7-2, OsUBP23, UBP23,UBP1-9, OsUBP1-9, OsUBP1, UBP1, OsLMP1, RSR1, OsRSR1, OsUBP2, UBP2,OsUBP12, OsUBP27, UBP27,OsUBP1-2, OsUBP30, UBP30,OsBIP110, BIP110, OsUBP7-4, UBP7-4, OsUBP28, UBP28,OsUBP7-3, OsUBP25, UBP25,OsUBP9-1, OsUBP22, UBP22,OsUBP4-8, OsUBP8, UBP8,OsUBP9-2, OsUBP34, UBP34,OsUBP5-3, OsUBP21, UBP21,OsUBP6, OsUBP14, UBP14, OsUCH14, UCH14,OsUBP1-7, OsUBP32, UBP32,OsUBP2-1, OsUBP18, UBP18,OsUBP7-7, OsUBP16, UBP16,OsUBP14-2, OsUBP24, UBP24,OsUBP7-6, OsUBP17, UBP17,UBP4-5, OsUBP4-5, OsUBP5, UBP5, OsFLA,OsSPO11-5, OsSPO11-5C, SPO11-1A, SPO11-1B, SPO11-1C, SPO11-1D, OsUBP13, UBP13, OsUBP35, UBP35,OsUBP4-4, OsUBP9, UBP9,OsUBP1-1, OsUBP29, UBP29,OsUBP1-8, OsUBP33, UBP33,OsM5, M5, OsM5a, OsUBP5-2, UBP5-2, OsUBP13, UBP13,OsLG1, OsUBP15, UBP15, OsUBP15/LG1, OsUBP7-1, UBP7-1,OsM13, M13, OsM13a, OsUBP5-4, UBP5-4, OsUBP12, UBP12,OsUBP4-6, OsUBP11, UBP11,OsM2, M2, OsM2a, OsUBP5-1, UBP5-1, OsUBP7, UBP7
46575	30610223	Wang C., Liu Q., Shen Y., Hua Y., Wang J., Lin J., Wu M., Sun T., Cheng Z., Mercier R., Wang K.	Clonal seeds from hybrid rice by simultaneous genome engineering of meiosis and fertilization genes.	Nat. Biotechnol.	37(3)	283-286	2019	RAD21-4,OSD1,PAIR1,MATL	OsRad21-4, REC8, OsREC8, OsRAD21-4,OsOSD1,Pair1, OsPAIR1,OspPLAIIbeta, pPLAIIbeta, OspPLAIIphi, pPLAIIphi, NLD, PLP1, OspPLAIIphi/PLP1, OsMATL, MTL, OsMTL
46576	30835768	Yadav M.K., Aravindan S., Ngangkham U., Raghu S., Prabhukarthikeyan S.R., Keerthana U., Marndi B.C., Adak T., Munda S., Deshmukh R., Pramesh D., Samantaray S., Rath P.C.	Correction: Blast resistance in Indian rice landraces: Genetic dissection by gene specific markers.	PLoS ONE	14(3)	e0213566	2019		
46577	30650107	Nagaraju M., Kumar S.A., Reddy P.S., Kumar A., Rao D.M., Kavi Kishor PB.	Genome-scale identification, classification, and tissue specific expression analysis of late embryogenesis abundant (LEA) genes under abiotic stress conditions in Sorghum bicolor L.	PLoS ONE	14(1)	e0209980	2019		
46578	31001294	Jamil M., Kountche B.A., Haider I., Wang J.Y., Aldossary F., Zarban R.A., Jia K.P., Yonli D., Shahul Hameed UF., Takahashi I., Ota T., Arold S.T., Asami T., Al-Babili S.	Methylation at the C-3' in D-Ring of Strigolactone Analogs Reduces Biological Activity in Root Parasitic Plants and Rice.	Front Plant Sci	10	353	2019		
46579	30729073	Cho K., Jo Y.M., Lim S.H., Kim J.Y., Han O., Lee J.Y.	Overexpressing wheat low-molecular-weight glutenin subunits in rice (<i>Oryza sativa</i> L. <i>japonica</i> cv. Koami) seeds.	3 Biotech	9(2)	49	2019		
46580	30621596	Anis G.B., Zhang Y., Islam A., Zhang Y., Cao Y., Wu W., Cao L., Cheng S.	RDWN6XB, a major quantitative trait locus positively enhances root system architecture under nitrogen deficiency in rice.	BMC Plant Biol.	19(1)	12	2019		
46581	31134103	Lachagari V.B.R., Gupta R., Lekkala S.P., Mahadevan L., Kuriakose B., Chakravartty N., Mohan Katta AVSK., Santhosh S., Reddy A.R., Thomas G.	Whole Genome Sequencing and Comparative Genomic Analysis Reveal Allelic Variations Unique to a Purple Colored Rice Landrace (<i>Oryza sativa</i> ssp. <i>indica</i> cv. Purpleputtu).	Front Plant Sci	10	513	2019		
46582	30669545	Tsaneva M., De Schutter K., Verstraeten B., Van Damme EJM.	Lectin Sequence Distribution in QTLs from Rice (Oryza sativa) Suggest A Role in Morphological Traits and Stress Responses.	Int J Mol Sci	20(2)		2019		
46583	30616154	Xie Y., Li X., Huang X., Han S., Amombo E., Wassie M., Chen L., Fu J.	Characterization of the Cd-resistant fungus Aspergillus aculeatus and its potential for increasing the antioxidant activity and photosynthetic efficiency of rice.	Ecotoxicol. Environ. Saf.	171	373-381	2019		
46584	30604324	Passricha N., Saifi S.K., Kharb P., Tuteja N.	Marker-free transgenic rice plant overexpressing pea LecRLK imparts salinity tolerance by inhibiting sodium accumulation.	Plant Mol. Biol.	99(3)	265-281	2019		
46585	30501607	Lang C., Karunairetnam S., Lo K.R., Kralicek A.V., Crowhurst R.N., Gleave A.P., MacDiarmid RM., Ingram J.R.	Common Variants of the Plant microRNA-168a Exhibit Differing Silencing Efficacy for Human Low-Density Lipoprotein Receptor Adaptor Protein 1 (LDLRAP1).	Microrna	8(2)	166-170	2019		
46586	30626113	Li W., Jia Y., Liu F., Wang F., Fan F., Wang J., Zhu J., Xu Y., Zhong W., Yang J.	Integration Analysis of Small RNA and Degradome Sequencing Reveals MicroRNAs Responsive to <i>Dickeya zeae</i> in Resistant Rice.	Int J Mol Sci	20(1)		2019		
46587	31059518	Sircar S., Parekh N.	Meta-analysis of drought-tolerant genotypes in Oryza sativa: A network-based approach.	PLoS ONE	14(5)	e0216068	2019		
46588	30663245	Zhang Y., Zhang Z., Sun X., Zhu X., Li B., Li J., Guo H., Chen C., Pan Y., Liang Y., Xu Z., Zhang H., Li Z.	Natural alleles of GLA for grain length and awn development were differently domesticated in rice subspecies japonica and indica.	Plant Biotechnol. J.			2019	RAE2 ,LABA1,AN1	OsEPFL1, EPFL1, GAD1, OsGAD1, OsRAE2, GLA, OsGLA, GAD1/RAE2, OgRAE2,LOGL6, OsLOGL6, An-2,An-1, OsbHLH093, RAE1, An-1/RAE1, RAE1/An-1, OsRAE1, OsAn-1, OgRAE1
46589	30846992	Hussain S., Bai Z., Huang J., Cao X., Zhu L., Zhu C., Khaskheli M.A., Zhong C., Jin Q., Zhang J.	1-Methylcyclopropene Modulates Physiological, Biochemical, and Antioxidant Responses of Rice to Different Salt Stress Levels.	Front Plant Sci	10	124	2019		
46590	30988947	Yin D., Selle P.H., Moss A.F., Wang Y., Dong X., Xiao Z., Guo Y., Yuan J.	Influence of starch sources and dietary protein levels on intestinal functionality and intestinal mucosal amino acids catabolism in broiler chickens.	J Anim Sci Biotechnol	10	26	2019		
46591	30715138	Xuan Y.H., Kumar V., Han X., Kim S.H., Jeong J.H., Kim C.M., Gao Y., Han C.D.	CBL-INTERACTING PROTEIN KINASE 9 regulates ammonium-dependent root growth downstream of IDD10 in rice (Oryza sativa).	Ann. Bot.			2019	CIPK09,CIPK14,AMT1;2,NKD,CIPK08,CIPK23	OsCIPK09, CIPK9, OsCIPK9, OsSnRK3.10, SnRK3.10,OsCIPK14, OsSnRK3.33, SnRK3.33,OsAMT1;2, AMT1-2, Osamt1-3, "OsAMT1,3", OsAMT1;3, OsAMT1.3, OsAMT1.2, AMT1.2,IDD10, OsIDD10, OsNKD, OsZOS4-11, ZOS4-11,OsCIPK08, CIPK8, OsCIPK8, OsSnRK3.4, SnRK3.4,OsCIPK23, Os-CIPK23, OsSnRK3.23, SnRK3.23
46592	31142188	Kajendran K., Chandrasekharan N.V., Hettiarachchi C.M., Sulochana Wijesundera WS.	Molecular characterization and expression of alpha-gliadin genes from wheat cultivar Dacke in Bg 250 rice variety.	GM Crops Food	10(2)	102-114	2019		
46593	30833948	Chintalapati P., Balakrishnan D., Venu Gopal Nammi TV., Javvaji S., Muthusamy S.K., Lella Venkata SR., Neelamraju S., Katti G.	Phenotyping and Genotype ~ Environment Interaction of Resistance to Leaffolder, <i>Cnaphalocrocis medinalis</i> Guenee (Lepidoptera: Pyralidae) in Rice.	Front Plant Sci	10	49	2019		
46594	30671309	Wang T., Li Z., Chen X., Long X.E.	Effects of nickel and cobalt on methane production and methanogen abundance and diversity in paddy soil.	PeerJ	7	e6274	2019		
46595	30643094	Kawagishi H.	Are fairy chemicals a new family of plant hormones?	Proc. Jpn. Acad., Ser. B, Phys. Biol. Sci.	95(1)	29-38	2019		
46596	30648400	Meeinkuirt W., Phusantisampan T., Saengwilai P.	root system architecture influencing cadmium accumulation in rice (Oryza sativa L.).	Int J Phytoremediation	21(1)	19-26	2019		
46597	30626062	Zhang L., Peng Y., Li J., Tian X., Chen Z.	OsMGT1 Confers Resistance to Magnesium Deficiency By Enhancing the Import of Mg in Rice.	Int J Mol Sci	20(1)		2019		
46598	30659066	Tian L., Chou H.L., Zhang L., Okita T.W.	Targeted Endoplasmic Reticulum Localization of Storage Protein mRNAs Requires the RNA-binding protein RBP-L.	Plant Physiol.	179(3)	1111-1131	2019		
46599	30710646	Sun J., Ma D., Tang L., Zhao M., Zhang G., Wang W., Song J., Li X., Liu Z., Zhang W., Xu Q., Zhou Y., Wu J., Yamamoto T., Dai F., Lei Y., Li S., Zhou G., Zheng H., Xu Z., Chen W.	Population Genomic Analysis and De Novo Assembly Reveal the Origin of Weedy Rice as an Evolutionary Game.	Mol Plant	12(5)	632-647	2019		
46600	30701331	Lakra N., Kaur C., Singla-Pareek SL., Pareek A.	Mapping the 'early salinity response' triggered proteome adaptation in contrasting rice genotypes using iTRAQ approach.	Rice (N Y)	12(1)	3	2019		
46601	30623558	Beasley J.T., Bonneau J.P., S?nchez-Palacios JT., Moreno-Moyano LT., Callahan D.L., Tako E., Glahn R.P., Lombi E., Johnson A.A.T.	Metabolic engineering of bread wheat improves grain iron concentration and bioavailability.	Plant Biotechnol. J.			2019		
46602	30972991	Ai Nio S., Siahaan R., Peter Mantilen Ludong D.	Partial submergence tolerance in Rice (<i>Oryza sativa</i> L.) Cultivated in North Sulawesi at the Vegetative Phase.	Pak. J. Biol. Sci.	22(2)	95-102	2019		
46603	30549178	Anacleto R., Badoni S., Parween S., Butardo V.M., Misra G., Cuevas R.P., Kuhlmann M., Trinidad T.P., Mallillin A.C., Acuin C., Bird A.R., Morell M.K., Sreenivasulu N.	Integrating a genome-wide association study with a large-scale transcriptome analysis to predict genetic regions influencing the glycaemic index and texture in rice.	Plant Biotechnol. J.	17(7)	1261-1275	2019		
46604	31139243	Sun D., Cen H., Weng H., Wan L., Abdalla A., El-Manawy AI., Zhu Y., Zhao N., Fu H., Tang J., Li X., Zheng H., Shu Q., Liu F., He Y.	Using hyperspectral analysis as a potential high throughput phenotyping tool in GWAS for protein content of rice quality.	Plant Methods	15	54	2019		
46605	31105658	Fang A., Gao H., Zhang N., Zheng X., Qiu S., Li Y., Zhou S., Cui F., Sun W.	A Novel Effector Gene <i>SCRE2</i> Contributes to Full Virulence of <i>Ustilaginoidea virens</i> to Rice.	Front Microbiol	10	845	2019		
46606	30694432	Alencar VTCB., Lobo A.K.M., Carvalho F.E.L., Silveira J.A.G.	High ammonium supply impairs photosynthetic efficiency in rice exposed to excess light.	Photosyn. Res.	140(3)	321-335	2019		
46607	30705339	Ji S.H., Kim J.S., Lee C.H., Seo H.S., Chun S.C., Oh J., Choi E.H., Park G.	Enhancement of vitality and activity of a plant growth-promoting bacteria (PGPB) by atmospheric pressure non-thermal plasma.	Sci Rep	9(1)	1044	2019		
46608	30955410	Fu W., Wang C., Xu W., Zhu P., Lu Y., Wei S., Wu X., Wu Y., Zhao Y., Zhu S.	Unintended effects of transgenic rice revealed by transcriptome and metabolism.	GM Crops Food	10(1)	20-34	2019		
46609	30706248	Li X., Tao Q., Miao J., Yang Z., Gu M., Liang G., Zhou Y.	Evaluation of differential qPE9-1/DEP1 protein domains in rice grain length and weight variation.	Rice (N Y)	12(1)	5	2019		
46610	30466149	Zhang L., Hu B., Deng K., Gao X., Sun G., Zhang Z., Li P., Wang W., Li H., Zhang Z., Fu Z., Yang J., Gao S., Li L., Yu F., Li Y., Ling H., Chu C.	NRT1.1B improves selenium concentrations in rice grains by facilitating selenomethinone translocation.	Plant Biotechnol. J.	17(6)	1058-1068	2019		
46611	31191579	Zhu X.F., Zhang X.L., Dong X.Y., Shen R.F.	Carbon Dioxide Improves Phosphorus Nutrition by Facilitating the Remobilization of Phosphorus From the Shoot Cell Wall in Rice (<i>Oryza sativa</i>).	Front Plant Sci	10	665	2019		
46612	30669971	Lekklar C., Pongpanich M., Suriya-Arunroj D., Chinpongpanich A., Tsai H., Comai L., Chadchawan S., Buaboocha T.	Genome-wide association study for salinity tolerance at the flowering stage in a panel of rice accessions from Thailand.	BMC Genomics	20(1)	76	2019		
46613	31231401	Aung M.S., Masuda H., Nozoye T., Kobayashi T., Jeon J.S., An G., Nishizawa N.K.	Nicotianamine Synthesis by <i>OsNAS3</i> Is Important for Mitigating Iron Excess Stress in Rice.	Front Plant Sci	10	660	2019		
46614	30900505	Hui S., Zhang M., Hao M., Yuan M.	Rice group I GH3 gene family, positive regulators of bacterial pathogens.	Plant Signal Behav	14(5)	e1588659	2019		
46615	30658570	Zhang X., Yin F., Xiao S., Jiang C., Yu T., Chen L., Ke X., Zhong Q., Cheng Z., Li W.	Proteomic analysis of the rice (Oryza officinalis) provides clues on molecular tagging of proteins for brown planthopper resistance.	BMC Plant Biol.	19(1)	30	2019		
46616	30699967	Islam M.S., Ontoy J., Subudhi P.K.	Meta-Analysis of Quantitative Trait Loci Associated with Seedling-Stage salt tolerance in Rice (<i>Oryza sativa</i> L.).	Plants (Basel)	8(2)		2019		
46617	30697219	Din M., Ming J., Hussain S., Ata-Ul-Karim ST., Rashid M., Tahir M.N., Hua S., Wang S.	Estimation of Dynamic Canopy Variables Using Hyperspectral Derived Vegetation Indices Under Varying N Rates at Diverse Phenological Stages of Rice.	Front Plant Sci	9	1883	2018		
46618	31134120	Yu J., Zhen X., Li X., Li N., Xu F.	Increased Autophagy of Rice Can Increase Yield and Nitrogen Use Efficiency (NUE).	Front Plant Sci	10	584	2019		
46619	31024605	Lin C., Sauter M.	Polar Auxin Transport Determines Adventitious Root Emergence and Growth in Rice.	Front Plant Sci	10	444	2019		
46620	31214220	Li L., Ye L., Kong Q., Shou H.	A Vacuolar Membrane Ferric-Chelate Reductase, OsFRO1, Alleviates Fe Toxicity in Rice (<i>Oryza sativa</i> L.).	Front Plant Sci	10	700	2019		
46621	30565255	Li Z., Xiong X., Wang F., Liang J., Li J.F.	Gene disruption through base editing-induced messenger RNA missplicing in plants.	New Phytol.	222(2)	1139-1148	2019		
46622	30397802	Santos M.V., Cuevas R.P.O., Sreenivasulu N., Molina L.	Measurement of Rice Grain Dimensions and Chalkiness, and Rice Grain Elongation Using Image Analysis.	Methods Mol. Biol.	1892	99-108	2019		
46623	30907523	Zeng Q.B., Xu Y.Y., Tu C.L., Yu X., Yang J., Hong F.	[Biological exposure limits caused by co exposure to fluoride and arsenic based on Wnt signaling pathway].	Ying Yong Sheng Tai Xue Bao	30(1)	37-42	2019		
46624	30828418	Takaishi S., Saito S., Kamada M., Otori N., Kojima H., Ozawa K., Takaiwa F.	Evaluation of basophil activation caused by transgenic rice seeds expressing whole T cell epitopes of the major Japanese cedar pollen allergens.	Clin Transl Allergy	9	11	2019		
46625	30894866	Vemanna R.S., Bakade R., Bharti P., Kumar M.K.P., Sreeman S.M., Senthil-Kumar M., Makarla U.	Cross-Talk Signaling in Rice During Combined Drought and Bacterial Blight Stress.	Front Plant Sci	10	193	2019		
46626	30623600	Li S., Shen L., Hu P., Liu Q., Zhu X., Qian Q., Wang K., Wang Y.	Developing disease-resistant thermosensitive male sterile rice by multiplex gene editing.	J Integr Plant Biol			2019		
46627	31194746	Frouin J., Labeyrie A., Boisnard A., Sacchi G.A., Ahmadi N.	Genomic prediction offers the most effective marker assisted breeding approach for ability to prevent arsenic accumulation in rice grains.	PLoS ONE	14(6)	e0217516	2019		
46628	30753479	Sureshkumar V., Dutta B., Kumar V., Prakash G., Mishra D.C., Chaturvedi K.K., Rai A., Sevanthi A.M., Solanke A.U.	RiceMetaSysB: a database of blast and bacterial blight responsive genes in rice and its utilization in identifying key blast-resistant WRKY genes.	Database (Oxford)	2019		2019		
46629	30856225	Zhao M., Zhao M., Gu S., Sun J., Ma Z., Wang L., Zheng W., Xu Z.	DEP1 is involved in regulating the carbon-nitrogen metabolic balance to affect grain yield and quality in rice (Oriza sativa L.).	PLoS ONE	14(3)	e0213504	2019		
46630	30612175	Ye H., Lu Q., Duan N., Wang Z.	GO-amplified fluorescence polarization assay for high-sensitivity detection of aflatoxin B1 with low dosage aptamer probe.	Anal Bioanal Chem	411(5)	1107-1115	2019		
46631	30995267	Liao Z.X., Ni Z., Wei X.L., Chen L., Li J.Y., Yu Y.H., Jiang W., Jiang B.L., He Y.Q., Huang S.	Dual RNA-seq of Xanthomonas oryzae pv. oryzicola infecting rice reveals novel insights into bacterial-plant interaction.	PLoS ONE	14(4)	e0215039	2019		
46632	30643123	Seto Y., Yasui R., Kameoka H., Tamiru M., Cao M., Terauchi R., Sakurada A., Hirano R., Kisugi T., Hanada A., Umehara M., Seo E., Akiyama K., Burke J., Takeda-Kamiya N., Li W., Hirano Y., Hakoshima T., Mashiguchi K., Noel J.P., Kyozuka J., Yamaguchi S.	Strigolactone perception and deactivation by a hydrolase receptor DWARF14.	Nat Commun	10(1)	191	2019		
46633	31134118	Wu L.B., Holtkamp F., Wairich A., Frei M.	Potassium Ion Channel Gene <i>OsAKT1</i> Affects Iron Translocation in Rice Plants Exposed to Iron Toxicity.	Front Plant Sci	10	579	2019		
46634	30701393	Hoang G.T., Van Dinh L., Nguyen T.T., Ta N.K., Gathignol F., Mai C.D., Jouannic S., Tran K.D., Khuat T.H., Do V.N., Lebrun M., Courtois B., Gantet P.	Genome-wide Association Study of a?Panel of Vietnamese Rice Landraces Reveals New QTLs for Tolerance to Water Deficit During the Vegetative Phase.	Rice (N Y)	12(1)	4	2019		
46635	30696055	Hussain S., Zhu C., Bai Z., Huang J., Zhu L., Cao X., Nanda S., Hussain S., Riaz A., Liang Q., Wang L., Li Y., Jin Q., Zhang J.	iTRAQ-Based Protein Profiling and Biochemical Analysis of Two Contrasting Rice Genotypes Revealed Their Differential Responses to Salt Stress.	Int J Mol Sci	20(3)		2019		
46636	30704461	Malzahn A.A., Tang X., Lee K., Ren Q., Sretenovic S., Zhang Y., Chen H., Kang M., Bao Y., Zheng X., Deng K., Zhang T., Salcedo V., Wang K., Zhang Y., Qi Y.	Application of CRISPR-Cas12a temperature sensitivity for improved genome editing in rice, maize, and Arabidopsis.	BMC Biol.	17(1)	9	2019		
46637	30673751	Yadav M.K., Aravindan S., Ngangkham U., Raghu S., Prabhukarthikeyan S.R., Keerthana U., Marndi B.C., Adak T., Munda S., Deshmukh R., Pramesh D., Samantaray S., Rath P.C.	Blast resistance in Indian rice landraces: Genetic dissection by gene specific markers.	PLoS ONE	14(1)	e0211061	2019		
46638	30815004	Rodr?guez-Celma J., Chou H., Kobayashi T., Long T.A., Balk J.	Hemerythrin E3 Ubiquitin Ligases as Negative Regulators of Iron Homeostasis in Plants.	Front Plant Sci	10	98	2019		
46639	30689021	Zha M., Imran M., Wang Y., Xu J., Ding Y., Wang S.	Transcriptome analysis revealed the interaction among strigolactones, auxin, and cytokinin in controlling the shoot branching of rice.	Plant Cell Rep.	38(3)	279-293	2019		
46640	30930921	Wang R., Jiang G., Feng X., Nan J., Zhang X., Yuan Q., Lin S.	Updating the Genome of the Elite Rice Variety Kongyu131 to Expand Its Ecological Adaptation Region.	Front Plant Sci	10	288	2019		
46641	31139200	Zhong H., Kong W., Gong Z., Fang X., Deng X., Liu C., Li Y.	Evolutionary Analyses Reveal Diverged Patterns of <i>SQUAMOSA</i> promoter binding protein-like (<i>SPL</i>) Gene Family in <i>Oryza</i> Genus.	Front Plant Sci	10	565	2019		
46642	31143556	Zhu Y.J., Sun Z.C., Niu X.J., Ying J.Z., Fan Y.Y., Mou T.M., Tang S.Q., Zhuang J.Y.	Dissection of three quantitative trait loci for grain size on the long arm of chromosome 10 in rice (<i>Oryza sativa</i> L.).	PeerJ	7	e6966	2019		
46643	30658494	Tan Y., Sun J.Y., Zhang B., Chen M., Liu Y., Liu X.D.	Sensitivity of a Ratio Vegetation Index Derived from Hyperspectral Remote Sensing to the Brown Planthopper Stress on Rice Plants.	Sensors (Basel)	19(2)		2019		
46644	30600409	Liang R., Qin R., Yang C., Zeng D., Jin X., Shi C.	Identification and Characterization of a Novel Strigolactone-Insensitive Mutant, Dwarfism with High tillering ability 34 (dhta-34) in Rice (Oryza sativa L.).	Biochem. Genet.	57(3)	403-420	2019		
46645	30397804	Molina L., Jimenez R., Sreenivasulu N., Cuevas R.P.O.	Multi-Dimensional Cooking Quality Classification Using Routine Quality Evaluation Methods.	Methods Mol. Biol.	1892	137-150	2019		
46646	31024591	Li Z., Huang J., Wang Z., Meng F., Zhang S., Wu X., Zhang Z., Gao Z.	Overexpression of <i>Arabidopsis</i> Nucleotide-Binding and Leucine-Rich Repeat Genes <i>RPS2</i> and <i>RPM1</i>(<i>D505V</i>) Confers Broad-Spectrum disease resistance in Rice.	Front Plant Sci	10	417	2019		
46647	31141528	Yamamoto K.	Distillation of crop models to learn plant physiology theories using machine learning.	PLoS ONE	14(5)	e0217075	2019		
46648	30697220	Singh P., Singh I., Shah K.	Reduced Activity of nitrate reductase Under Heavy Metal Cadmium Stress in Rice: An <i>in silico</i> Answer.	Front Plant Sci	9	1948	2018		
46649	31178049	Soldan R., Mapelli F., Crotti E., Schnell S., Daffonchio D., Marasco R., Fusi M., Borin S., Cardinale M.	Bacterial endophytes of mangrove propagules elicit early establishment of the natural host and promote growth of cereal crops under salt stress.	Microbiol. Res.	223-225	33-43			
46650	30552799	Bello B.K., Hou Y., Zhao J., Jiao G., Wu Y., Li Z., Wang Y., Tong X., Wang W., Yuan W., Wei X., Zhang J.	NF-yb1-YC12-bHLH144 complex directly activates Wx to regulate grain quality in rice (Oryza sativa L.).	Plant Biotechnol. J.	17(7)	1222-1235	2019	HAP3K,WX1,HAP5L,BHLH144	OsHAP3K/OsNF-YB1, OsHAP3K, OsNF-YB1, NF-YB1, nf-yb1, OsLEC1, OsNF-YB-1, NFYB1, OsEnS-41,wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx,OsEnS-133, OsHAP5L, OsNF-YC12, NF-YC12, OsNF-YC11, NF-YC11, NFYC11,OsbHLH144, OsEnS-65, bHLH144, EnS-65, OsZOU-1, OsZOU1, ZOU-1, ZOU1
46651	30656946	Jalali M., Hemati Matin N.	Nutritional status and risks of potentially toxic elements in some paddy soils and rice tissues.	Int J Phytoremediation	21(2)	111-119	2019		
46652	30537381	He Y., Yang B., He Y., Zhan C., Cheng Y., Zhang J., Zhang H., Cheng J., Wang Z.	A quantitative trait locus, qSE3, promotes seed germination and seedling establishment under salinity stress in rice.	Plant J.	97(6)	1089-1104	2019		
46653	30649573	You X., Zhang W., Hu J., Jing R., Cai Y., Feng Z., Kong F., Zhang J., Yan H., Chen W., Chen X., Ma J., Tang X., Wang P., Zhu S., Liu L., Jiang L., Wan J.	FLOURY ENDOSPERM15 encodes a glyoxalase I involved in compound granule formation and starch synthesis in rice endosperm.	Plant Cell Rep.	38(3)	345-359	2019		
46654	30654253	Wu Q., Leung J.Y.S., Du Y., Kong D., Shi Y., Wang Y., Xiao T.	Trace metals in e-waste lead to serious health risk through consumption of rice growing near an abandoned e-waste recycling site: Comparisons with PBDEs and AHFRs.	Environ. Pollut.	247	46-54	2019		
46655	30691093	Zhang Z.H., Zhu Y.J., Wang S.L., Fan Y.Y., Zhuang J.Y.	Importance of the Interaction between heading date Genes <i>Hd1</i> and <i>Ghd7</i> for Controlling Yield Traits in Rice.	Int J Mol Sci	20(3)		2019		
46656	30691406	Ji Z., Zeng Y., Liang Y., Qian Q., Yang C.	Proteomic dissection of the rice-Fusarium fujikuroi interaction and the correlation between the proteome and transcriptome under disease stress.	BMC Genomics	20(1)	91	2019		
46657	31297040	Yang M., Cheng L., Yan L., Shu W., Wang X., Qiu Y.	Mapping and characterization of a quantitative trait locus resistance to the brown planthopper in the rice variety IR64.	Hereditas	156	22	2019		
46658	30621186	Peng P., Gao Y., Li Z., Yu Y., Qin H., Guo Y., Huang R., Wang J.	Proteomic Analysis of a Rice Mutant <i>sd58</i> Possessing a Novel <i>d1</i> Allele of heterotrimeric G protein Alpha Subunit (RGA1) in Salt Stress with a Focus on ROS Scavenging.	Int J Mol Sci	20(1)		2019		
46659	31114596	Nozoye T., von Wir?n N., Sato Y., Higashiyama T., Nakanishi H., Nishizawa N.K.	Characterization of the Nicotianamine Exporter ENA1 in Rice.	Front Plant Sci	10	502	2019		
46660	31134107	Li R., Li M., Ashraf U., Liu S., Zhang J.	Exploring the Relationships Between Yield and Yield-Related Traits for Rice Varieties Released in China From 1978 to 2017.	Front Plant Sci	10	543	2019		
46661	31002711	Nothstein A.K., Eiche E., Riemann M., Nick P., Maier P., Tenspolde A., Neumann T.	Coupling Langmuir with Michaelis-Menten-A practical alternative to estimate Se content in rice?	PLoS ONE	14(4)	e0214219	2019		
46662	31191507	Mukherjee P., Mitra A., Roy M.	<i>Halomonas</i> Rhizobacteria of <i>Avicennia marina</i> of Indian Sundarbans Promote Rice Growth Under Saline and Heavy Metal Stresses Through Exopolysaccharide Production.	Front Microbiol	10	1207	2019		
46663	30397798	Butardo V.M., Sreenivasulu N., Juliano B.O.	Improving Rice Grain Quality: State-of-the-Art and Future Prospects.	Methods Mol. Biol.	1892	19-55	2019		
46664	30828343	Sandhu N., Yadaw R.B., Chaudhary B., Prasai H., Iftekharuddaula K., Venkateshwarlu C., Annamalai A., Xangsayasane P., Battan K.R., Ram M., Cruz M.T.S., Pablico P., Maturan P.C., Raman K.A., Catolos M., Kumar A.	Evaluating the Performance of Rice Genotypes for Improving Yield and Adaptability Under Direct Seeded Aerobic Cultivation Conditions.	Front Plant Sci	10	159	2019		
46665	30666263	Song G., Kwon C.T., Kim S.H., Shim Y., Lim C., Koh H.J., An G., Kang K., Paek N.C.	The Rice <i>SPOTTED LEAF4</i> (<i>SPL4</i>) Encodes a Plant Spastin That Inhibits ROS Accumulation in Leaf Development and Functions in leaf senescence.	Front Plant Sci	9	1925	2018		
46666	30687361	Das R., Arora V., Jaiswal S., Iquebal M.A., Angadi U.B., Fatma S., Singh R., Shil S., Rai A., Kumar D.	<i>PolyMorphPredict</i>: A Universal Web-Tool for Rapid Polymorphic Microsatellite Marker Discovery From Whole Genome and Transcriptome Data.	Front Plant Sci	9	1966	2018		
46667	30778363	Wang B., Zhang Y., Bi Z., Liu Q., Xu T., Yu N., Cao Y., Zhu A., Wu W., Zhan X., Anis G.B., Yu P., Chen D., Cheng S., Cao L.	Impaired Function of the calcium-dependent protein kinase, <i>OsCPK12</i>, Leads to Early Senescence in Rice (<i>Oryza sativa</i> L.).	Front Plant Sci	10	52	2019		
46668	30791555	No J., Mun S., Shin M.	Properties and Digestibility of Octenyl Succinic Anhydride-Modified Japonica-Type Waxy and Non-Waxy Rice Starches.	Molecules	24(4)		2019		
46669	30781587	Li H., Wang Z., Liang M., Cai L., Yang L.	Methionine Augments Antioxidant Activity of rice protein during Gastrointestinal Digestion.	Int J Mol Sci	20(4)		2019		
46670	30820693	Fang C., Li L., He R., Wang D., Wang M., Hu Q., Ma Q., Qin K., Feng X., Zhang G., Fu X., Liu Z.	Identification of S23 causing both interspecific hybrid male sterility and environment-conditioned male sterility in rice.	Rice (N Y)	12(1)	10	2019	_,_,S23	S23-ORF5,qHMS7 ORF3, S23-ORF3 ,S23(t)
46671	30677211	Ren D., Xu Q., Qiu Z., Cui Y., Zhou T., Zeng D., Guo L., Qian Q.	FON4 prevents the multi-floret spikelet in rice.	Plant Biotechnol. J.	17(6)	1007-1009	2019		
46672	30770460	Hou J., Cao C., Ruan Y., Deng Y., Liu Y., Zhang K., Tan L., Zhu Z., Cai H., Liu F., Sun H., Gu P., Sun C., Fu Y.	<i>ESA1</i> Is Involved in Embryo Sac Abortion in Interspecific Hybrid Progeny of Rice.	Plant Physiol.	180(1)	356-366	2019	ESA1	OsESA1
46673	30811812	Liu C., Schl?ppi MR., Mao B., Wang W., Wang A., Chu C.	The bZIP73 transcription factor controls rice cold tolerance at the reproductive stage.	Plant Biotechnol. J.			2019	MST8,MST7,CIN3,BZIP71,NCED1,NCED2,TFX1	OsMST8, OSMST8, OsSTP8, STP8,OsMST7, OSMST7, OsSTP7, STP7,OSINV4, OsINV4, INV4, OsCIN3,OsbZIP71, DLN221, OsDLN221, DLN222, OsDLN222,OSNCED1, OsNCED-1, OsNCED3, OsNced3, NCED3, OsNCED9, NCED9,OSNCED2, OsNCED2, OsNCED5, NCED5,OsbZIP73, bZIP73, OsTFX1
46674	30623557	Sun Q., Li T.Y., Li D.D., Wang Z.Y., Li S., Li D.P., Han X., Liu J.M., Xuan Y.H.	Overexpression of Loose Plant Architecture 1 increases planting density and resistance to sheath blight disease via activation of PIN-FORMED 1a in rice.	Plant Biotechnol. J.	17(5)	855-857	2019		
46675	30728357	Toriba T., Tokunaga H., Shiga T., Nie F., Naramoto S., Honda E., Tanaka K., Taji T., Itoh J.I., Kyozuka J.	BLADE-ON-PETIOLE genes temporally and developmentally regulate the sheath to blade ratio of rice leaves.	Nat Commun	10(1)	619	2019	WFP,BOP3,BOP2,BOP1	OsSPL14, SPL14, IPA1, WFP/IPA1, OsSPL14/WFP/IPA1, OsIPA1,  IPA1/OsSPL14,NH5, OsNH5, OsBOP3,  OsBTBA6, BTBA6,OsNH5, NH5, OsBOP2,  OsBTBA5, BTBA5,OsNPR5, NPR5, NH4, OsNH4, OsBOP1,  OsBTBA3, BTBA3
46676	30790011	Cai M., Chen S., Wu M., Zheng T., Zhou L., Li C., Zhang H., Wang J., Xu X., Chai J., Ren Y., Guo X., Zhang X., Lei C., Cheng Z., Wang J., Jiang L., Zhai H., Wang H., Zhu S., Wan J.	Early heading 7 interacts with DTH8, and regulates flowering time in rice.	Plant Cell Rep.	38(5)	521-532	2019	RAP1A,RAP1B,RFT1,HD3A,GHD7,EF1,HD5	OsMADS15, FDRMADS3, RMADS215, MADS15, DEP,MADS14, OsMADS14, FDRMADS6, RMADS211, AGL10,FT-L 3, OsFTL3, FTL3, FT-L3, RFT, OsRFT1,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,Ghd2, Ghd7, OsGhd7, OsCCT26, OsCMF8, OsI, Ghd7/Hd4, Hd4, EH7-1/Hd4, Ghd7-0a, EH7-1, EH7/Ghd7, EH7, OsEH7, GLW7.1, OsGLW7.1,Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,Hd5(t)*, Hd5, qHD5, HAP3H, OsHAP3H, NF-YB, CBF-A, DTH8 , qHD5(t)*, Ghd8, Ghd8/DTH8, Lhd1, NF-YB11, OsNF-YB11, NFYB11, LH8, DTH8/Ghd8, RH8, DTH8/Ghd8/LHD1, CAR8, DTH8/Ghd8/ OsHAP3H, EF8, OsEF8
46677	30805719	Singh P., Ara H., Tayyeba S., Pandey C., Sinha A.K.	Development of efficient protocol for rice transformation overexpressing MAP kinase and their effect on root phenotypic traits.	Protoplasma	256(4)	997-1011	2019		
46678	30940331	Thomas D.T., Puthur J.T.	Amplification of abiotic stress tolerance potential in rice seedlings with a low dose of UV-B seed priming.	Funct. Plant Biol.			2019		
46679	30632163	Li Y., Cao X.L., Zhu Y., Yang X.M., Zhang K.N., Xiao Z.Y., Wang H., Zhao J.H., Zhang L.L., Li G.B., Zheng Y.P., Fan J., Wang J., Chen X.Q., Wu X.J., Zhao J.Q., Dong O.X., Chen X.W., Chern M., Wang W.M.	Osa-miR398b boosts H2 O2 production and rice blast disease-resistance via multiple superoxide dismutases.	New Phytol.	222(3)	1507-1522	2019		
46680	30734111	Kumar G., Jyothsna M., Valarmathi P., Roy S., Banerjee A., Tarafdar J., Senapati B.K., Robin S., Manonmani S., Rabindran R., Dasgupta I.	Assessment of resistance to rice tungro disease in popular rice varieties in India by introgression of a transgene against Rice tungro bacilliform virus.	Arch. Virol.	164(4)	1005-1013	2019		
46681	30738218	Awasthi J.P., Chandra T., Mishra S., Parmar S., Shaw B.P., Nilawe P.D., Chauhan N.K., Sahoo S., Panda S.K.	Identification and characterization of drought responsive miRNAs in a drought tolerant upland rice cultivar KMJ 1-12-3.	Plant Physiol. Biochem.	137	62-74	2019		
46682	30776559	Xie T., Li Y., Dong H., Liu Y., Wang M., Wang G.	Effects and mechanisms on the reduction of lead accumulation in rice grains through lime amendment.	Ecotoxicol. Environ. Saf.	173	266-272	2019		
46683	30781568	Fu X., Xu J., Zhou M., Chen M., Shen L., Li T., Zhu Y., Wang J., Hu J., Zhu L., Gao Z., Dong G., Guo L., Ren D., Chen G., Lin J., Qian Q., Zhang G.	Enhanced Expression of QTL <i>qLL9/DEP1</i> Facilitates the Improvement of Leaf Morphology and Grain Yield in Rice.	Int J Mol Sci	20(4)		2019		
46684	30791412	Jewel Z.A., Ali J., Mahender A., Hernandez J., Pang Y., Li Z.	Identification of Quantitative Trait Loci Associated with Nutrient Use Efficiency Traits, Using SNP Markers in an Early Backcross Population of Rice (<i>Oryza sativa</i> L.).	Int J Mol Sci	20(4)		2019		
46685	30725309	Wang J., Zhang Q., Wang Y., Huang J., Luo N., Wei S., Jin J.	Analysing the rice young panicle transcriptome reveals the gene regulatory network controlled by TRIANGULAR HULL1.	Rice (N Y)	12(1)	6	2019	TIFY10C,TIFY11B,TRE1,TPP3,BMY6,_,TIFY11D,PME25,EIL2,_,SAUR20,BHLH6,BMY6,TIFY11C,TIFY10B,_,SAUR23,BLS1,TPP6	OsJAZ7, JAZ7, OsJAZ 8, OsJAZ8, Os-JAZ8, JAZ8, OsTIFY10c, OsTIFY10c/OsJAZ8,OsJAZ4, JAZ4, OsJAZ 10, OsJAZ10, JAZ10, OsTIFY11b,OsTRE, OsTRE1, TRE,OsTPP3, TPS3, OsTPS3,OsBMY6, BAM3, OsBAM3,,OsTIFY11d, OsJAZ1, JAZ1, OsJAZ 12, OsJAZ12, JAZ12,OsPME25,OsEIL2,OsENOD93, ENOD93,OsSAUR20,OsbHLH006, bHLH006, OsbHLH6, bHLH6, RERJ1, OsRERJ1, bHLH35,,OsJAZ2, JAZ2, OsJAZ 11, OsJAZ11, Os-JAZ11, JAZ11, OsTIFY11c, OsJAZ1, JAZ1,OsJAZ6, OsJAZ 7, OsJAZ7, OsTIFY10B, JAZ6, JAZ7,,OsSAUR23,OsBLS1, OsG1L6, G1L6, TH1, OsTH1, TH1/BSG1/BLS1/AFD1, BSG1, OsBSG1, AFD1, OsAFD1, BH1, OsBH1,OsTPP6, OsTPP5, TPP5
46686	30823472	Robles P., Quesada V.	Transcriptional and Post-transcriptional Regulation of Organellar Gene Expression (OGE) and Its Roles in Plant salt tolerance.	Int J Mol Sci	20(5)		2019		
46687	30715580	P?rez L., Soto E., Farr? G., Juanos J., Villorbina G., Bassie L., Medina V., Serrato A.J., Sahrawy M., Rojas J.A., Romagosa I., Mu?oz P., Zhu C., Christou P.	CRISPR/Cas9 mutations in the rice Waxy/GBSSI gene induce allele-specific and zygosity-dependent feedback effects on endosperm starch biosynthesis.	Plant Cell Rep.	38(3)	417-433	2019		
46688	31086485	Kitazawa N., Shomura A., Mizubayashi T., Ando T., Nagata K., Hayashi N., Takahashi A., Yamanouchi U., Fukuoka S.	Rapid DNA-genotyping system targeting ten loci for resistance to blast disease in rice.	Breed. Sci.	69(1)	68-83	2019		
46689	30790051	Wang Y., Wang Y., Deng D.	Multifaceted plant G protein: interaction network, agronomic potential, and beyond.	Planta	249(5)	1259-1266	2019		
46690	30820172	Kawakami D., Yoshida T., Kanemaru Y., Huarhua Zaquinaula MH., Mizukami T., Arimoto M., Shibata T., Goto A., Enami Y., Amano H., Teraoka T., Komatsu K., Arie T.	Induction of resistance to diseases in plant by aerial ultrasound irradiation.	Journal of Pesticide Science	44(1)	41-47	2019		
46691	30733435	Chen J., Lu L., Benjamin J., Diaz S., Hancock C.N., Stajich J.E., Wessler S.R.	Tracking the origin of two genetic components associated with transposable element bursts in domesticated rice.	Nat Commun	10(1)	641	2019		
46692	31086490	Fujino K., Yamanouchi U., Nonoue Y., Obara M., Yano M.	Switching genetic effects of the flowering time gene <i>Hd1</i> in LD conditions by <i>Ghd7</i> and <i>OsPRR37</i> in rice.	Breed. Sci.	69(1)	127-132	2019		
46693	30796339	Yadav S., Sandhu N., Majumder R.R., Dixit S., Kumar S., Singh S.P., Mandal N.P., Das S.P., Yadaw R.B., Singh V.K., Sinha P., Varshney R.K., Kumar A.	Epistatic interactions of major effect drought QTLs with genetic background loci determine grain yield of rice under drought stress.	Sci Rep	9(1)	2616	2019		
46694	30825766	Khaliq M.A., Khan Tarin MW., Jingxia G., Yanhui C., Guo W.	Soil liming effects on CH4, N2O emission and Cd, Pb accumulation in upland and paddy rice.	Environ. Pollut.	248	408-420	2019		
46695	30773771	Liu F., McDonald M., Schwessinger B., Joe A., Pruitt R., Erickson T., Zhao X., Stewart V., Ronald P.C.	Variation and inheritance of the Xanthomonas RaxX-raxSTAB gene cluster required for activation of XA21-mediated immunity.	Mol. Plant Pathol.	20(5)	656-672	2019		
46696	30759266	Ganie S.A., Molla K.A., Henry R.J., Bhat K.V., Mondal T.K.	Advances in understanding salt tolerance in rice.	Theor. Appl. Genet.	132(4)	851-870	2019		
46697	30623552	Zhang H., Tan X., He Y., Xie K., Li L., Wang R., Hong G., Li J., Li J., Taliansky M., MacFarlane S., Yan F., Chen J., Sun Z.	Rice black-streaked dwarf virus P10 acts as either a synergistic or antagonistic determinant during superinfection with related or unrelated virus.	Mol. Plant Pathol.	20(5)	641-655	2019		
46698	30791475	Ding X., Huang X., Sun L., Wu J., Liu J.	Influence of Abscisic Acid-Biosynthesis Inhibitor Fluridone on the Feeding Behavior and Fecundity of <i>Nilaparvata lugens</i>.	Insects	10(2)		2019		
46699	30753891	Zhang Q., Xu B., Pan J., Liu D., Lv R., Yan D.	Expression and active testing of VP7 from GCRV (Grass carp reovirus) fused with cholera toxin B subunit in rice calli.	Protein Expr. Purif.	158	1-8	2019		
46700	30800612	Teh C.Y., Ho C.L., Shaharuddin N.A., Lai K.S., Mahmood M.	Proteome of rice roots treated with exogenous proline.	3 Biotech	9(3)	101	2019		
46701	30597738	Xu R., Li N., Li Y.	Control of grain size by G protein signaling in rice.	J Integr Plant Biol	61(5)	533-540	2019		
46702	30584677	Ichida H., Morita R., Shirakawa Y., Hayashi Y., Abe T.	Targeted exome sequencing of unselected heavy-ion beam-irradiated populations reveals less-biased mutation characteristics in the rice genome.	Plant J.	98(2)	301-314	2019		
46703	30808281	Qin W., Liu C., Jiang W., Xue Y., Wang G., Liu S.	A coumarin analogue NFA from endophytic Aspergillus fumigatus improves drought resistance in rice as an antioxidant.	BMC Microbiol.	19(1)	50	2019		
46704	30733556	Chettry U., Chrungoo N.K., Kulkarni K.	Comparative transcriptomics approach in elucidation of carotenoid biosynthesis regulation in grains of rice (Oryza sativa L.).	Sci Rep	9(1)	1631	2019		
46705	30778050	Wang J.Y., Haider I., Jamil M., Fiorilli V., Saito Y., Mi J., Baz L., Kountche B.A., Jia K.P., Guo X., Balakrishna A., Ntui V.O., Reinke B., Volpe V., Gojobori T., Blilou I., Lanfranco L., Bonfante P., Al-Babili S.	The apocarotenoid metabolite zaxinone regulates growth and strigolactone biosynthesis in rice.	Nat Commun	10(1)	810	2019	D10,D17,ZAS-L3,CCD8D,ZAS,D27,ZAS-L2	d10(d15,d16), d16, d15, dwf9, d10, OsCCD8b, OsCCD8, CCD8, OsD10,d17(t), dwf14, d17, htd1, OsCCD7, CCD7, D17/HTD1, HTD1, OsHTD1, OsD17,OsZAS-L3, OsZAS2, ZAS2,OsCCD8d, ZAS-L1, OsZAS-L1, OsZAS1b, ZAS1b, OsCCD8c, CCD8c ,OsZAS, OsCCD8e, CCD8e ,d27(d t), dt, dwf23, d27, OsD27,OsZAS-L2, OsZAS1c, ZAS1c, OsCCD8d, CCD8d 
46706	31086482	Qing D., Dai G., Zhou W., Huang S., Liang H., Gao L., Gao J., Huang J., Zhou M., Chen R., Chen W., Huang F., Deng G.	Development of molecular marker and introgression of <i>Bph3</i> into elite rice cultivars by marker-assisted selection.	Breed. Sci.	69(1)	40-46	2019		
46707	30778782	Sandhu N., Dixit S., Swamy B.P.M., Raman A., Kumar S., Singh S.P., Yadaw R.B., Singh O.N., Reddy J.N., Anandan A., Yadav S., Venkataeshwarllu C., Henry A., Verulkar S., Mandal N.P., Ram T., Badri J., Vikram P., Kumar A.	Marker Assisted Breeding to Develop Multiple Stress Tolerant Varieties for Flood and Drought Prone Areas.	Rice (N Y)	12(1)	8	2019		
46708	30823623	Paleari L., Movedi E., Vesely F.M., Thoelke W., Tartarini S., Foi M., Boschetti M., Nutini F., Confalonieri R.	Estimating Crop Nutritional Status Using Smart Apps to Support Nitrogen Fertilization. A Case Study on Paddy Rice.	Sensors (Basel)	19(4)		2019		
46709	30743158	Gupta M.K., Vadde R., Gouda G., Donde R., Kumar J., Behera L.	Computational approach to understand molecular mechanism involved in BPH resistance in Bt- rice plant.	J. Mol. Graph. Model.	88	209-220	2019		
46710	30718781	Yoolong S., Kruasuwan W., Thanh Ph?m HT., Jaemsaeng R., Jantasuriyarat C., Thamchaipenet A.	Modulation of salt tolerance in Thai jasmine rice (Oryza sativa L. cv. KDML105) by Streptomyces venezuelae ATCC 10712 expressing ACC deaminase.	Sci Rep	9(1)	1275	2019		
46711	30856405	Kumar D., Sarmah B.K., Das P.K.	Ethylene mediates repression of anthocyanin accumulation in black rice pericarps in the absence of light.	J. Plant Physiol.	236	34-38	2019		
46712	30501128	Suratanee A., Chokrathok C., Chutimanukul P., Khrueasan N., Buaboocha T., Chadchawan S., Plaimas K.	Two-State Co-Expression Network Analysis to Identify Genes Related to Salt Tolerance in Thai rice.	Genes (Basel)	9(12)		2018		
46713	30404149	Ciulu M., C?diz-Gurrea ML., Segura-Carretero A.	Extraction and Analysis of Phenolic Compounds in Rice: A Review.	Molecules	23(11)		2018		
46714	30390532	Fu H., Yu H., Li T., Wu Y.	Effect of cadmium stress on inorganic and organic components in xylem sap of high cadmium accumulating rice line (Oryza sativa L.).	Ecotoxicol. Environ. Saf.	168	330-337	2019		
46715	30456488	Hamdani S., Khan N., Perveen S., Qu M., Jiang J., Govindjee, Zhu X.G.	Changes in the photosynthesis properties and photoprotection capacity in rice (Oryza sativa) grown under red, blue, or white light.	Photosyn. Res.	139(1-3)	107-121	2019		
46716	30503392	Ha S.H., Kim J.K., Jeong Y.S., You M.K., Lim S.H., Kim J.K.	Stepwise pathway engineering to the biosynthesis of zeaxanthin, astaxanthin and capsanthin in rice endosperm.	Metab. Eng.	52	178-189	2019		
46717	30448978	Quero G., Bonnecarr?re V., Fern?ndez S., Silva P., Simondi S., Borsani O.	Light-use efficiency and energy partitioning in rice is cultivar dependent.	Photosyn. Res.	140(1)	51-63	2019		
46718	30443261	Kilasi N.L., Singh J., Vallejos C.E., Ye C., Jagadish S.V.K., Kusolwa P., Rathinasabapathi B.	Heat Stress Tolerance in Rice (<i>Oryza sativa</i> L.): Identification of Quantitative Trait Loci and Candidate Genes for Seedling Growth Under Heat Stress.	Front Plant Sci	9	1578	2018		
46719	30413183	He P., Wang X., Zhang X., Jiang Y., Tian W., Zhang X., Li Y., Sun Y., Xie J., Ni J., He G., Sang X.	Short and narrow flag leaf1, a GATA zinc finger domain-containing protein, regulates flag leaf size in rice (Oryza sativa).	BMC Plant Biol.	18(1)	273	2018		
46720	30388832	Li Z., Wang Y., Bello B.K., Ajadi A.A., Tong X., Chang Y., Zhang J.	Construction of a Quantitative Acetylomic Tissue Atlas in Rice (<i>Oryza sativa</i> L.).	Molecules	23(11)		2018		
46721	30419020	Zhang C., Shen Y., Tang D., Shi W., Zhang D., Du G., Zhou Y., Liang G., Li Y., Cheng Z.	The zinc finger protein DCM1 is required for male meiotic cytokinesis by preserving callose in rice.	PLoS Genet.	14(11)	e1007769	2018	_,PABN2,MS188,GSL2,ABCG15,DCM1,G1,GSL10,GSL3,GSL9,PABN1	OsA6,OsPABN2,OsMYB80, MYB80, OsMS188, Os2R_MYB44, 2R_MYB44, OsMYB103/OsMYB80/OsMS188/BM1, OsMYB103, MYB103,OsGSL2, CalS12-2, OsCalS12-2,OsABCG15, PDA, PDA1, OsABCG15/PDA1,OsDCM1, SAW1, OsSAW1,Osg1, g1,OsGSL10, CalS3-2, OsCalS3-2,OsGSL3, CalS12, OsCalS12,OsGSL9, CalS7-2, OsCalS7-2,OsPABN1
46722	30481282	Wu X., Zhang Q., Wu Z., Tai F., Wang W.	Subcellular locations of potential cell wall proteins in plants: predictors, databases and cross-referencing.	Brief. Bioinformatics	19(6)	1130-1140	2018		
46723	30444911	Shen Q., Liu L., Wang L., Wang Q.	Indole primes plant defense against necrotrophic fungal pathogen infection.	PLoS ONE	13(11)	e0207607	2018		
46724	30476516	Divya K., Vijayan S., Nair S.J., Jisha M.S.	Optimization of chitosan nanoparticle synthesis and its potential application as germination elicitor of Oryza sativa L.	Int. J. Biol. Macromol.	124	1053-1059	2019		
46725	30628243	Guo Y.X., Zhao X.L.	[Effect of Particulate Organic Matter on Cadmium Uptake and Transport in Rice].	Huan Jing Ke Xue	39(11)	5180-5188	2018		
46726	30390130	Inukai T., Nagashima S., Kato M.	Pid3-I1 is a race-specific partial-resistance allele at the Pid3 blast resistance locus in rice.	Theor. Appl. Genet.	132(2)	395-404	2019	PID3	Pi-d3, Pid3, Pi25, Pid3-I1, qBRM6.2
46727	30448535	Zhang Q., Liang Z., Cui X., Ji C., Li Y., Zhang P., Liu J., Riaz A., Yao P., Liu M., Wang Y., Lu T., Yu H., Yang D., Zheng H., Gu X.	N6-Methyladenine DNA Methylation in Japonica and Indica Rice Genomes and Its Association with Gene Expression, Plant Development, and Stress Responses.	Mol Plant	11(12)	1492-1508	2018		
46728	30597783	Chiao W.T., Syu C.H., Chen B.C., Juang K.W.	Cadmium in rice grains from a field trial in relation to model parameters of Cd-toxicity and -absorption in rice seedlings.	Ecotoxicol. Environ. Saf.	169	837-847	2019		
46729	30824026	Ichida H., Abe T.	An improved and robust method to efficiently deplete repetitive elements from complex plant genomes.	Plant Sci.	280	455-460	2019		
46730	30541451	Yu X., Kimball J.A., Milla-Lewis SR.	High density genetic maps of St. Augustinegrass and applications to comparative genomic analysis and QTL mapping for turf quality traits.	BMC Plant Biol.	18(1)	346	2018		
46731	30555075	Pavani M., Sundaram R.M., Ramesha M.S., Kishore K., Kemparaju K.B.	Prediction of heterosis in rice based on divergence of morphological and molecular markers.	J. Genet.	97(5)	1263-1279	2018		
46732	30531940	Cho J., Benoit M., Catoni M., Drost H.G., Brestovitsky A., Oosterbeek M., Paszkowski J.	Sensitive detection of pre-integration intermediates of long terminal repeat retrotransposons in crop plants.	Nat Plants	5(1)	26-33	2019		
46733	30375057	Lv Z., Zhang W., Wu Y., Huang S., Zhou Y., Zhang A., Deng X., Xu C., Xu Z., Gong L., Liu B.	Extensive allele-level remodeling of histone methylation modification in reciprocal F1 hybrids of rice subspecies.	Plant J.	97(3)	571-586	2019		
46734	30563847	Dangol S., Chen Y., Hwang B.K., Jwa N.S.	Iron- and Reactive Oxygen Species-Dependent Ferroptotic Cell Death in Rice-<i>Magnaporthe oryzae</i> Interactions.	Plant Cell	31(1)	189-209	2019		
46735	30606471	Chen Z., Zhao W., Zhu X., Zou C., Yin J., Chern M., Zhou X., Ying H., Jiang X., Li Y., Liao H., Cheng M., Li W., He M., Wang J., Wang J., Ma B., Wang J., Li S., Zhu L., Chen X.	Identification and characterization of rice blast resistance gene Pid4 by a combination of transcriptomic profiling and genome analysis.	J Genet Genomics	45(12)	663-672	2018		
46736	30824011	Wang Y., Zhong P., Zhang X., Liu J., Zhang C., Yang X., Wan C., Liu C., Zhou H., Yang B., Sun C., Deng X., Wang P.	GRA78 encoding a putative S-sulfocysteine synthase is involved in chloroplast development at the early seedling stage of rice.	Plant Sci.	280	321-329	2019	GRA78	OsGRA78
46737	30533310	Zhao M., Wang W., Wei L., Chen P., Yuan F., Wang Z., Ying X.	Molecular evolution and expression divergence of three key Met biosynthetic genes in plants: <i>CGS</i>, <i>HMT</i> and <i>MMT</i>.	PeerJ	6	e6023	2018	HMT1,MMT,CGS4,CGS1,CGS5,CGS2,HMT2,HMT3,CGS3,HMT4	OsaHMT1, OsHMT1,OsaMMT, OsMMT,OsaCGS4, OsCGS4,OsaCGS1, OsCGS1,OsaCGS5, OsCGS5,OsaCGS2, OsCGS2,OsaHMT2, OsHMT2,OsaHMT3, OsHMT3,OsaCGS3, OsCGS3,OsaHMT4, OsHMT4
46738	30631333	Long J., Song C., Yan F., Zhou J., Zhou H., Yang B.	Non-TAL Effectors From <i>Xanthomonas oryzae</i> pv. <i>oryzae</i> Suppress Peptidoglycan-Triggered MAPK Activation in Rice.	Front Plant Sci	9	1857	2018		
46739	30581315	Samara Shekar Reddy S., Singh B., Peter A.J., Venkateswar Rao T.	Production of transgenic local rice cultivars (<i>Oryza sativa</i> L.) for improved drought tolerance using <i>Agrobacterium</i> mediated transformation.	Saudi J Biol Sci	25(8)	1535-1545	2018		
46740	30288819	Zhang G., Sun M., Wang J., Lei M., Li C., Zhao D., Huang J., Li W., Li S., Li J., Yang J., Luo Y., Hu S., Zhang B.	PacBio full-length cDNA sequencing integrated with RNA-seq reads drastically improves the discovery of splicing transcripts in rice.	Plant J.	97(2)	296-305	2019		
46741	30619409	Zhao M., Song J., Wu A., Hu T., Li J.	Mining Beneficial Genes for Aluminum Tolerance Within a Core Collection of Rice Landraces Through Genome-Wide Association Mapping With High Density SNPs From Specific-Locus Amplified Fragment Sequencing.	Front Plant Sci	9	1838	2018		
46742	30559099	Yang W., Zheng X.H., Cheng C.P., Ye N., Huang F.H., Ye X.F.	[Mapping and cloning of GAD1-2 for long awn using CSSLs in rice (Oryza sativa L.)].	Yi Chuan	40(12)	1101-1111	2018		
46743	30365034		Database Resources of the BIG Data Center in 2019.	Nucleic Acids Res.	47(D1)	D8-D14	2019		
46744	30690658	Chen L., Zheng X., Guo X., Cui Y., Yang H.	The roles of Aux/IAA gene family in development of Dendrocalamus sinicus (Poaceae: Bambusoideae) inferred by comprehensive analysis and expression profiling.	Mol. Biol. Rep.	46(2)	1625-1634	2019		
46745	30733188	Wang J., Wang C., Wang K.	Generation of marker-free transgenic rice using CRISPR/Cas9 system controlled by floral specific promoters.	J Genet Genomics	46(1)	61-64	2019		
46746	30639120	Shen B.R., Wang L.M., Lin X.L., Yao Z., Xu H.W., Zhu C.H., Teng H.Y., Cui L.L., Liu E.E., Zhang J.J., He Z.H., Peng X.X.	Engineering a New Chloroplastic Photorespiratory Bypass to Increase Photosynthetic Efficiency and Productivity in Rice.	Mol Plant	12(2)	199-214	2019		
46747	31134125	Wu Y., Xu W., Wang F., Zhao S., Feng F., Song J., Zhang C., Yang J.	Increasing Cytosine Base Editing Scope and Efficiency With Engineered Cas9-PmCDA1 Fusions and the Modified sgRNA in Rice.	Front Genet	10	379	2019		
46748	31169887	Chandran A.K.N., Moon S., Yoo Y.H., Gho Y.S., Cao P., Sharma R., Sharma M.K., Ronald P.C., Jung K.H.	A web-based tool for the prediction of rice transcription factor function.	Database (Oxford)	2019		2019		
46749	30449034	Qiu Z., Zhu L., He L., Chen D., Zeng D., Chen G., Hu J., Zhang G., Ren D., Dong G., Gao Z., Shen L., Zhang Q., Guo L., Qian Q.	DNA damage and reactive oxygen species cause cell death in the rice local lesions 1 mutant under high light and high temperature.	New Phytol.	222(1)	349-365	2019		
46750	30800142	Li P., Yang H., Wang L., Liu H., Huo H., Zhang C., Liu A., Zhu A., Hu J., Lin Y., Liu L.	Physiological and Transcriptome Analyses Reveal Short-Term Responses and Formation of Memory Under Drought Stress in Rice.	Front Genet	10	55	2019		
46751	30693151	Khadka R.B., Uphoff N.	Effects of <i>Trichoderma</i> seedling treatment with System of Rice Intensification management and with conventional management of transplanted rice.	PeerJ	7	e5877	2019		
46752	30586149	Wang J., Hasegawa T., Li L., Lam S.K., Zhang X., Liu X., Pan G.	Changes in grain protein and amino acids composition of wheat and rice under short-term increased [CO2 ] and temperature of canopy air in a paddy from East China.	New Phytol.	222(2)	726-734	2019		
46753	30397800	Pasion E., Aguila R., Sreenivasulu N., Anacleto R.	Novel Imaging Techniques to Analyze Panicle Architecture.	Methods Mol. Biol.	1892	75-88	2019		
46754	31058278	Wang K., Wang C., Guo B., Song K., Shi C., Jiang X., Wang K., Tan Y., Wang L., Wang L., Li J., Li Y., Cai Y., Zhao H., Sun X.	CropCircDB: a comprehensive circular RNA resource for crops in response to abiotic stress.	Database (Oxford)	2019		2019		
46755	30721864	Wang M., Tang Z., Chen X.P., Wang X., Zhou W.X., Tang Z., Zhang J., Zhao F.J.	Water management impacts the soil microbial communities and total arsenic and methylated arsenicals in rice grains.	Environ. Pollut.	247	736-744	2019		
46756	30610631	Gu W., Zhang D., Qi Y., Yuan Z.	Generating Photoperiod-Sensitive Genic Male Sterile Rice Lines with CRISPR/Cas9.	Methods Mol. Biol.	1917	97-107	2019		
46757	30804963	Hwang S.K., Singh S., Maharana J., Kalita S., Tuncel A., Rath T., Panda D., Modi M.K., Okita T.W.	Mechanism Underlying Heat Stability of the Rice Endosperm Cytosolic ADP-glucose pyrophosphorylase.	Front Plant Sci	10	70	2019		
46758	30415327	Rathore D.S., Zuniga-Soto E., Mullins E.	Ensifer-Mediated Transformation (EMT) of Rice (Monocot) and Oilseed Rape (Dicot).	Methods Mol. Biol.	1864	37-48	2019		
46759	30398650	Assis R.	Lineage-Specific Expression Divergence in Grasses Is Associated with Male Reproduction, Host-Pathogen Defense, and Domestication.	Genome Biol Evol	11(1)	207-219	2019		
46760	30804959	Liu X., Chen S., Chen M., Zheng G., Peng Y., Shi X., Qin P., Xu X., Teng S.	Association Study Reveals Genetic Loci Responsible for Arsenic, Cadmium and Lead Accumulation in Rice Grain in Contaminated Farmlands.	Front Plant Sci	10	61	2019		
46761	30610632	Zhou J., Zhong Z., Chen H., Li Q., Zheng X., Qi Y., Zhang Y.	Knocking Out MicroRNA Genes in Rice with CRISPR-Cas9.	Methods Mol. Biol.	1917	109-119	2019		
46762	30679610	Liu Y., Li C., Fang B., Fang Y., Chen K., Zhang Y., Zhang H.	Potential for high yield with increased seedling density and decreased N fertilizer application under seedling-throwing rice cultivation.	Sci Rep	9(1)	731	2019		
46763	30415331	Wu C., Sui Y.	Efficient and Fast Production of Transgenic Rice Plants by Agrobacterium-Mediated Transformation.	Methods Mol. Biol.	1864	95-103	2019		
46764	30639871	Gu J.F., Zhou H., Tang H.L., Yang W.T., Zeng M., Liu Z.M., Peng P.Q., Liao B.H.	Cadmium and arsenic accumulation during the rice growth period under in situ remediation.	Ecotoxicol. Environ. Saf.	171	451-459	2019		
46765	31156595	Bertolazi A.A., de Souza SB., Ruas K.F., Campostrini E., de Rezende CE., Cruz C., Melo J., Colodete C.M., Varma A., Ramos A.C.	Inoculation With <i>Piriformospora indica</i> Is More Efficient in Wild-Type Rice Than in Transgenic Rice Over-Expressing the vacuolar H+-PPase.	Front Microbiol	10	1087	2019		
46766	30951558	Bei X., Shahid M.Q., Wu J., Chen Z., Wang L., Liu X.	Re-sequencing and transcriptome analysis reveal rich DNA variations and differential expressions of fertility-related genes in neo-tetraploid rice.	PLoS ONE	14(4)	e0214953	2019		
46767	30611782	Xiong Q., Cao C., Shen T., Zhong L., He H., Chen X.	Comprehensive metabolomic and proteomic analysis in biochemical metabolic pathways of rice spikes under drought and submergence stress.	Biochim Biophys Acta Proteins Proteom	1867(3)	237-247	2019		
46768	30610627	Li R., Char S.N., Yang B.	Creating Large Chromosomal Deletions in Rice Using CRISPR/Cas9.	Methods Mol. Biol.	1917	47-61	2019		
46769	30931320	Bazrkar-Khatibani L., Fakheri B.A., Hosseini-Chaleshtori M., Mahender A., Mahdinejad N., Ali J.	Genetic Mapping and Validation of Quantitative Trait Loci (QTL) for the Grain Appearance and Quality Traits in Rice (<i>Oryza sativa</i> L.) by Using Recombinant Inbred Line (RIL) Population.	International Journal of Genomics	2019	3160275	2019		
46770	30679785	Maeda S., Dubouzet J.G., Kondou Y., Jikumaru Y., Seo S., Oda K., Matsui M., Hirochika H., Mori M.	The rice CYP78A gene BSR2 confers resistance to Rhizoctonia solani and affects seed size and growth in Arabidopsis and rice.	Sci Rep	9(1)	587	2019	BSR2	OsBSR2, CYP78A15, OsCYP78A15
46771	30678057	Ma S., Lin S., Wang M., Zou Y., Tao H., Liu W., Zhang L., Liang K., Ai Y., He H.	Differential Expression Proteins Contribute to Race-Specific Resistant Ability in Rice (<i>Oryza sativa</i> L.).	Plants (Basel)	8(2)		2019		
46772	30415343	Char S.N., Li R., Yang B.	CRISPR/Cas9 for Mutagenesis in Rice.	Methods Mol. Biol.	1864	279-293	2019		
46773	30643178	Huang M., Fan L., Zou Y.	Contrasting responses of grain yield to reducing nitrogen application rate in double- and single-season rice.	Sci Rep	9(1)	92	2019		
46774	31057567	Sun X., Liu Q., Tang T., Chen X., Luo X.	Silicon Fertilizer Application Promotes Phytolith Accumulation in Rice Plants.	Front Plant Sci	10	425	2019		
46775	31026257	Prajapati G.K., Pandey B., Mishra A.K., Baek K.H., Pandey D.M.	Identification of GCC-box and TCC-box motifs in the promoters of differentially expressed genes in rice (Oryza sativa L.): Experimental and computational approaches.	PLoS ONE	14(4)	e0214964	2019		
46776	30523657	Cakir B., Tian L., Crofts N., Chou H.L., Koper K., Ng C.Y., Tuncel A., Gargouri M., Hwang S.K., Fujita N., Okita T.W.	Re-programming of gene expression in the CS8 rice line over-expressing ADPglucose pyrophosphorylase induces a suppressor of starch biosynthesis.	Plant J.	97(6)	1073-1088	2019	SBDCP2,SBDCP1	OsSBDCP2,OsSBDCP1
46777	30700006	Quan N.V., Tran H.D., Xuan T.D., Ahmad A., Dat T.D., Khanh T.D., Teschke R.	Momilactones A and B Are alpha-amylase and alpha-Glucosidase Inhibitors.	Molecules	24(3)		2019		
46778	30956429	Pongprayoon W., Tisarum R., Theerawittaya C., Cha-Um S.	Evaluation and clustering on salt-tolerant ability in rice genotypes (<i>Oryza sativa</i> L. subsp. <i>indica</i>) using multivariate physiological indices.	Physiol Mol Biol Plants	25(2)	473-483	2019		
46779	30739972	Horgan F.G., Almazan M.P., Vu Q., Ramal A.F., Bernal C.C., Yasui H., Fujita D.	Unanticipated benefits and potential ecological costs associated with pyramiding leafhopper resistance loci in rice.	Crop Prot.	115	47-58	2019		
46780	30380099	Wu D., Guo Z., Ye J., Feng H., Liu J., Chen G., Zheng J., Yan D., Yang X., Xiong X., Liu Q., Niu Z., Gay A.P., Doonan J.H., Xiong L., Yang W.	Combining high-throughput micro-CT-RGB phenotyping and genome-wide association study to dissect the genetic architecture of tiller growth in rice.	J. Exp. Bot.	70(2)	545-561	2019		
46781	30397810	Molina L., Lapis J.R., Sreenivasulu N., Cuevas R.P.O.	Determination of Macronutrient and Micronutrient Content in Rice Grains Using Inductively Coupled Plasma-Optical Emission Spectrometry (ICP-OES).	Methods Mol. Biol.	1892	253-264	2019		
46782	31231409	Bund? M., Shi X., Vernet M., Marcos J.F., L?pez-Garc?a B., Coca M.	Rice Seeds as Biofactories of Rationally Designed and Cell-Penetrating Antifungal PAF Peptides.	Front Plant Sci	10	731	2019		
46783	30397801	Lapis J.R., Cuevas R.P.O., Sreenivasulu N., Molina L.	Measuring head rice Recovery in Rice.	Methods Mol. Biol.	1892	89-98	2019		
46784	30624619	Chen W., Lv H., Nie F., Lin H.	i6mA-Pred: Identifying DNA N6-methyladenine sites in the rice genome.	Bioinformatics			2019		
46785	30397814	Bandyopadhyay A., Yin X., Biswal A., Coe R., Quick W.P.	CRISPR-Cas9-Mediated Genome Editing of Rice Towards Better Grain Quality.	Methods Mol. Biol.	1892	311-336	2019		
46786	30535157	Chen M.X., Zhu F.Y., Wang F.Z., Ye N.H., Gao B., Chen X., Zhao S.S., Fan T., Cao Y.Y., Liu T.Y., Su Z.Z., Xie L.J., Hu Q.J., Wu H.J., Xiao S., Zhang J., Liu Y.G.	Alternative splicing and translation play important roles in hypoxic germination in rice.	J. Exp. Bot.	70(3)	817-833	2019		
46787	30840921	Chen B., Yin G., Whelan J., Zhang Z., Xin X., He J., Chen X., Zhang J., Zhou Y., Lu X.	Composition of Mitochondrial Complex I during the Critical Node of Seed Aging in Oryza sativa.	J. Plant Physiol.	236	7-14	2019		
46788	30827753	Zhang X., Qin P., Peng Y., Ma B., Hu J., Fan S., Hu B., Zhang G., Yuan H., Yan W., Chen W., Tu B., He H., Ma B., Wang Y., Li S.	A single nucleotide substitution at 5'-UTR of GSN1 represses its translation and leads to an increase of grain length in rice.	J Genet Genomics	46(2)	105-108	2019		
46789	30733489	Tonnessen B.W., Bossa-Castro AM., Mauleon R., Alexandrov N., Leach J.E.	Shared cis-regulatory architecture identified across defense response genes is associated with broad-spectrum quantitative resistance in rice.	Sci Rep	9(1)	1536	2019		
46790	30796712	Rao T.B., Chopperla R., Methre R., Punniakotti E., Venkatesh V., Sailaja B., Reddy M.R., Yugander A., Laha G.S., Madhav M.S., Sundaram R.M., Ladhalakshmi D., Balachandran S.M., Mangrauthia S.K.	Pectin induced transcriptome of a Rhizoctonia solani strain causing sheath blight disease in rice reveals insights on key genes and RNAi machinery for development of pathogen derived resistance.	Plant Mol. Biol.	100(1-2)	59-71	2019		
46791	30769935	Sun M., Yu L., Tong Z., Dong X., Chu Y., Wang M., Gao T., Duan J.	Dissipation Dynamics and Dietary Risk Assessment of Kresoxim-Methyl Residue in Rice.	Molecules	24(4)		2019		
46792	30781829	Liu F., Xu Y., Zhou L., Ali A., Jiang H., Zhu S., Li X.	DNA repair gene <i>ZmRAD51A</i> Improves Rice and <i>Arabidopsis</i> Resistance to Disease.	Int J Mol Sci	20(4)		2019		
46793	30717326	Minh T.N., Xuan T.D., Van T.M., Andriana Y., Viet T.D., Khanh T.D., Tran H.D.	Phytochemical Analysis and Potential Biological Activities of Essential Oil from Rice Leaf.	Molecules	24(3)		2019		
46794	30730076	Li S., Zhao J., Zhai Y., Yuan Q., Zhang H., Wu X., Lu Y., Peng J., Sun Z., Lin L., Zheng H., Chen J., Yan F.	The hypersensitive induced reaction 3 (HIR3) gene contributes to plant basal resistance via an EDS1 and salicylic acid-dependent pathway.	Plant J.	98(5)	783-797	2019	PR10A,PR1B,HIR3,_	PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1, OsPR1a, PR1a,OsHIR3,PR5 
46795	30754644	Peng Y., Zou T., Li L., Tang S., Li Q., Zhang J., Chen Y., Wang X., Yang G., Hu Y.	Map-Based Cloning and Functional Analysis of <i>YE1</i> in Rice, Which Is Involved in Light-Dependent Chlorophyll Biogenesis and Photoperiodic Flowering Pathway.	Int J Mol Sci	20(3)		2019		
46796	30831418	Wang Y., Yin H., Li X., Waterhouse G.I.N., Ai S.	Photoelectrochemical immunosensor for N6-methyladenine detection based on Ru@UiO-66, Bi2O3 and Black TiO2.	Biosens Bioelectron	131	163-170	2019		
46797	30717213	Li C.L., Lu P.H., Fu S.F., Wu A.T.	A Highly Selective and Sensitive Fluorescent Chemosensor for Detecting Al3+ Ion in Aqueous Solution and Plant Systems.	Sensors (Basel)	19(3)		2019		
46798	30783736	Biswas S., Li R., Yuan Z., Zhang D., Zhao X., Shi J.	Development of methods for effective identification of CRISPR/Cas9-induced indels in rice.	Plant Cell Rep.	38(4)	503-510	2019		
46799	30791357	Fiaz S., Ahmad S., Noor M.A., Wang X., Younas A., Riaz A., Riaz A., Ali F.	Applications of the CRISPR/Cas9 System for Rice Grain Quality Improvement: Perspectives and Opportunities.	Int J Mol Sci	20(4)		2019		
46800	31128680	Yu N., Liu Q., Zhang Y., Zeng B., Chen Y., Cao Y., Zhang Y., Rani M.H., Cheng S., Cao L.	cs3, a Ycf54 domain-containing protein, affects chlorophyll biosynthesis in rice (Oryza sativa L.).	Plant Sci.	283	11-22	2019		
46801	30813400	Tao H., Fan S.S., Jiang S., Xiang X., Yan X., Zhang L.H., Cui Z.N.	Small Molecule Inhibitors Specifically Targeting the Type III Secretion System of <i>Xanthomonas oryzae</i> on Rice.	Int J Mol Sci	20(4)		2019		
46802	30781405	Zhao M., Wang W., Wei L., Chen P., Peng L., Qin Z., Yuan F., Wang Z., Ying X.	The Evolution and Biocatalysis of FAD2 Indicate Its Correlation to the Content of Seed Oil in Plants.	Int J Mol Sci	20(4)		2019	FAD2-3,FAD2-1,FAD2-2	OsFAD2-3, OsaFAD2-2, FAD2-2,OsFAD2, OsFAD2-1, OsaFAD2-1,OsFAD2-2, OsaFAD2-3, FAD2-3
46803	30744566	Wang S., Tian Q., Zhou S., Mao D., Chen L.	A quantitative proteomic analysis of the molecular mechanism underlying fertility conversion in thermo-sensitive genetic male sterility line AnnongS-1.	BMC Plant Biol.	19(1)	65	2019		
46804	31086487	Obara M., Fukuta Y., Yanagihara S.	Genetic variation and QTLs related to root development in upland New Rice for Africa (NERICA) varieties.	Breed. Sci.	69(1)	94-103	2019		
46805	30576523	Nadir S., Li W., Zhu Q., Khan S., Zhang X.L., Zhang H., Wei Z.F., Li M.T., Zhou L., Li C.Y., Chen L.J., Lee D.S.	A novel discovery of a long terminal repeat retrotransposon-induced hybrid weakness in rice.	J. Exp. Bot.	70(4)	1197-1207	2019		
46806	30541929	Yang M.H., Wu D.H., Kao C.H.	A Statistical Procedure for Genome-Wide Detection of QTL Hotspots Using Public Databases with Application to Rice.	G3 (Bethesda)	9(2)	439-452	2019		
46807	30788769	Muniandy K., Tan M.H., Song B.K., Ayub Q., Rahman S.	Comparative sequence and methylation analysis of chloroplast and amyloplast genomes from rice.	Plant Mol. Biol.	100(1-2)	33-46	2019		
46808	30825376	Piao W., Suk-Hwan Kim, Byoung-Doo Lee, An G., Sakuraba Y., Nam-Chon Paek	Rice transcription factor OsMYB102 delays leaf senescence by down-regulating abscisic acid accumulation and signaling.	J. Exp. Bot.	70(10)	2699-2715	2019	ABA8OX2,NYC1,NAC58,SGR,MYB102,BZIP72	OsABA8OX2, OsABA8ox2, CYP707A6, OsCYP707A6, OsAba-ox2, OsABA8ox2, OsABA8OH2, ABA8OH2, ABA8'-OH2, OsABA8'ox2, ABA8'ox2, OsABAX2, ABAX2, OsABA8'OH2, ABA8'OH2,nyc1, OsNYC1,OsNAP, NAP, ONAC058, ONAC58, Os PS1, PS1, OsCTb1, CTb1,sgr(t), sgr, OsSGR, OsSgr, SGR1, OsSGR1,R2R3-MYB, OsMYB102, OsMYB81, MYB81,OsbZIP72, OsAREB2, OsABF4, ABF4, Osbzip72, OsABI5, ABI5
46809	30894127	Hirendra Nath Barman, Sheng Z., Fiaz S., Zhong M., Wu Y., Cai Y., Wang W., Jiao G., Tang S., Wei X., Hu P.	Generation of a new thermo-sensitive genic male sterile rice line by targeted mutagenesis of tms5 gene through CRISPR/Cas9 system.	BMC Plant Biol.	19(1)	109	2019	TMS5	TRZ1, OsTRZ1, OsaTRZ1, OsTMS5
46810	30923923	Li P., Lei K., Li Y., He X., Wang S., Liu R., Ji L., Hou B.	Identification and characterization of the first cytokinin glycosyltransferase from rice.	Rice (N Y)	12(1)	19	2019	_	OsEnS-18, EnS-18, Os6
46811	30972509	Lee G., Piao R., Lee Y., Kim B., Seo J., Lee D., Jang S., Jin Z., Lee C., Joong Hyoun Chin, Hee-Jong Koh	Identification and Characterization of LARGE EMBRYO, a New Gene Controlling Embryo Size in Rice (Oryza sativa L.).	Rice (N Y)	12(1)	22	2019	LE	OsRHC1, RHC1, OsLE, TT3.1, OsTT3.1,  OsRING133, RING133, DGS1, OsDGS1
46812	31059825	Yang R., Li P., Mei H., Wang D., Sun J., Yang C., Hao L., Cao S., Chu C., Hu S., Song X., Cao X.	Fine-Tuning of miR528 Accumulation Modulates Flowering Time in Rice.	Mol Plant			2019	MIR528,RFI2,HD3A,SPL9	miR528, Osa-miR528, OsmiR528, OsMIR528, osa-MIR528, miR528*, osa-miR528, osa-miR528-5p, MIR528-T1, MIR528-T2,OsRFPH2-10, RFPH2-10, OsRFI2, UCIP1, OsUCIP1,  OsRING344, RING344,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,OsSPL9
46813	29677135	Zhao M., Chen P., Wang W., Yuan F., Zhu D., Wang Z., Ying X.	Molecular Evolution and Expression Divergence of <i>HMT</i> Gene Family in Plants.	Int J Mol Sci	19(4)		2018	HMT4,HMT3,HMT2,HMT1	OsaHMT4, OsHMT4,OsaHMT3, OsHMT3,OsaHMT2, OsHMT2,OsaHMT1, OsHMT1
46814	30921464	Li P., Zhang L., Mo X., Ji H., Bian H., Hu Y., Majid T., Long J., Pang H., Tao Y., Ma J., Dong H.	Rice aquaporin PIP1;3 and harpin Hpa1 of bacterial blight pathogen cooperate in a type III effector translocation.	J. Exp. Bot.	70(12)	3057-3073	2019	XA13,PIP1;3	xa13, Xa13, Os8N3, Os-8N3, 8N3, OsSWEET11, SWEET11, OsSWEET11/Xa13, Xa13/Os8N3/SWEET11, Os8N3/Xa13, OsSWEET11/Os8N3, OsSWEET11a, SWEET11a,OsPIP1;3. PIP1.3, PIP1-3, RWC3, RWC-3, OsPIP1-3
46815	0	LIU Bao-Yu, LIU Jun-Hua, DU Dan, YAN Meng, ZHENG Li-Yuan, WU Xue, SANG Xian-chun, ZHANG Chang-Wei	Identification and Gene Mapping of a Lesion Mimic Mutant spl34 in Rice (Oryza sativa L.)	Acta Agronomica Sinica	44(3)	332-342	2018		
46816	21205614	Madana M R Ambavaram, Krishnan A., Kurniawan R Trijatmiko, Pereira A.	Coordinated activation of cellulose and repression of lignin biosynthesis pathways in rice.	Plant Physiol.	155(2)	916-31	2011	_,CESA7,CAD9,CSLC2,CSLE2,_,4CL3,ERF1,CAD1,NAC29,CAD5,CESA1,CAD3,GH2,_,_,4CL5,ACS6,CESA5,MYB20,CSLF7,CAD6,CAD8A,NAC90,_,CSLD1,BC7,BC6,_	OsMYB42/85, MYB42/85, OsMYB85, MYB85, Os2R_MYB85, 2R_MYB85 ,OsCesA7, OsCESA7, OS_CESA07, OsCesA 7, CesA7,OsCAD9,OsCslC2, OsCSLC2 ,OsCslE2, OsCSLE2 ,OsMYB58/63-L, MYB58/63-L, OsMYB58/63a, MYB58/63a, Os2R_MYB29, 2R_MYB29, OsMYB58, MYB58,Os4CL3, Os4CL2, Os4CL, 4CL2, 4CL,Os06ERF, OsWR2, WR2, OsERF#001, OsERF001, OsERF1, AP2/EREBP#057, AP2/EREBP57, RD1, OsSHN, SHN,OsCAD1,ONAC029, ONAC29, OsSWN2, OsSWN2L, OsSWN2S, OsNST1/2, SWN2, SWN2L, SWN2S, NST1/2, DLN201, OsDLN201,OsCAD5,OsCesA1, OsCesA-1, OsCESA1, OS_CESA01, CesA1,OsCAD3,gh2, CAD2, CAD, OsCAD2, OsGH2 ,ONAC007, ONAC7, OsSND1, SND1, OsSWN1, SWN1, DLN157, OsDLN157,OsMYB58/63, OsMYB58, OsMYB63, MYB58/63, MYB58, MYB63, OsMYB58/63b, MYB58/63b, Os2R_MYB51, 2R_MYB51,Os4CL5, 4CL3, Os4CL3,OsACS6, 4ACS6, Os4ACS6,OsCesA5, OsCESA5, OS_CESA05,OsMYB20, MYB20/43, Os2R_MYB30, 2R_MYB30,OsCslF7, OsCSLF7 ,OsCAD6,OsCAD8A,OsSWN7, SWN7, ONAC090, ONAC90, VND6, VND4/5/6, OsVND6, OsVND4/5/6, DLN155, OsDLN155,OsACS5, ACS5, 4ACS5, Os4ACS5,csld1, OsCSLD1, OsCslD1,OsCesA4, OsCESA4, CESA4, OS_CESA04, BC11, bc7t, Bc7(t), bc-7, OsCesA 4, CesA4, FC17/CESA4, FC17, OsFC17,Bc6*, Bc6, OsCesA9, CESA9, OsCESA9, OS_CESA09, OsCesA 9, CesA9, BC88, SDBC1, OsSDBC1,R2R3-MYB, MYB48/59, OsMYB48/59, Os2R_MYB98, 2R_MYB98
46817	21083564	Thangasamy S., Cian-Ling Guo, Ming-Hsiang Chuang, Ming-Hsing Lai, Chen J., Guang-Yuh Jauh	Rice SIZ1, a SUMO E3 ligase, controls spikelet fertility through regulation of anther dehiscence.	New Phytol.	189(3)	869-82	2011	MADS27,CCR21,SIZ1	OsMADS27, MADS-27a, OsSTA66, OsMADS27a,OsCCR21 ,OsSIZ1, OsSIZ1.1, OsSIZ1.2, OsSIZ1.3, DLN131, OsDLN131, OsPHD23, PHD23
46818	20080803	Lee S., Un Sil Jeon, Seung Jin Lee, Yoon-Keun Kim, Daniel Pergament Persson, S?ren Husted, Jan K Schj?rring, Kakei Y., Masuda H., Naoko K Nishizawa, An G.	Iron fortification of rice seeds through activation of the nicotianamine synthase gene.	Proc. Natl. Acad. Sci. U.S.A.	106(51)	22014-9	2009	NAS3	OsNAS3
46819	11939564	Monna L., Kitazawa N., Yoshino R., Suzuki J., Masuda H., Maehara Y., Tanji M., Sato M., Nasu S., Minobe Y.	Positional cloning of rice semidwarfing gene, sd-1: rice "green revolution gene" encodes a mutant enzyme involved in gibberellin synthesis.	DNA Res.	9(1)	11-7	2002	SD1	sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2, OsPHQ1, OsPHq1, PHq1
46820	0	Dixit N., Dokku P., V. Amitha Mithra S., K. Parida S., K. Singh A., K. Singh N., Mohapatra T.	Haplotype structure in grain weight gene GW2 and its association with grain characteristics in rice	Euphytica	192(1)	55-61	2013	GW2	OsGW2, OsRING429, RING429, GNL44, OsGNL44
46821	30914468	Duan E., Wang Y., Li X., Lin Q., Zhang T., Wang Y., Zhou C., Zhang H., Jiang L., Wang J., Lei C., Zhang X., Guo X., Wang H., Wan J.	OsSHI1 Regulates Plant Architecture Through Modulating the Transcriptional Activity of IPA1 in Rice.	Plant Cell	31(5)	1026-1042	2019	FC1,DEP1,WFP,SHI1	fc1, OsTB1, tb1, OsTB1/FC1, Os TB1, TB1, OsFC1, MP3, OsMP3,OsDEP1, EP, qPE9-1, DN1, DEP1/DN1/qPE9-1, qNGR9, qDEP1, RGG4/DEP1/DN1/qPE9-1/OsGGC3, RGG4, OsDN1, OsGGC3, GGC3,OsSPL14, SPL14, IPA1, WFP/IPA1, OsSPL14/WFP/IPA1, OsIPA1,  IPA1/OsSPL14,OsSHI1
46822	31073866	Xiang X., Zhang P., Yu P., Zhang Y., Yang Z., Sun L., Wu W., Riaz Muhammad Khan, Abbas A., Cheng S., Cao L.	LSSR1 facilitates seed setting rate by promoting fertilization in rice.	Rice (N Y)	12(1)	31	2019	LSSR1,_,_,_	OsLSSR1,,,
46823	31138620	Wang A., Hou Q., Si L., Huang X., Luo J., Lu D., Zhu J., Shangguan Y., Miao J., Xie Y., Wang Y., Zhao Q., Feng Q., Zhou C., Li Y., Fan D., Lu Y., Tian Q., Wang Z., Han B.	The PLATZ Transcription Factor GL6 Affects Grain Length and Number in Rice.	Plant Physiol.	180(4)	2077-2090	2019	MADS22,G1L5,MADS55,DGS1,GL6,CYCT1;4,LHS1,MADS47,TFC1	OsMADS22, RMD1, DLN68, OsDLN68,OsG1L5, TAW1, OsTAW1,OsMADS55, DLN163, OsDLN163,OsRPC53, RPC53, OsRPC4, RPC4, OsDGS1,OsGL6,CycT1;4, CycT1;os;4, Orysa;CycT1;4,OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO, OsLHS1, OsLG3b, LG3b, qLGY3, LGY3, DLN80, OsDLN80, OLR, OsOLR, GW3p6, OsGW3p6, OsMADS1GW3p6, MADS1GW3p6, qLGY3/OsLG3b/GW3p6,OsMADS47, OsMDP1, MDP, MDP1,OsTFC1
46824	31161713	Nan N., Wang J., Shi Y., Qian Y., Jiang L., Huang S., Liu Y., Wu Y., Liu B., Zheng-Yi Xu	Rice plastidial NAD-dependent malate dehydrogenase 1 negatively regulates salt stress response by reducing the vitamin B6 content.	Plant Biotechnol. J.			2019	PLR1,PDX1.3B,PDX3,PDX2 ,PDX1.3C,PDX1.3A,MDH1	OsPLR1, OsAKR2, AKR2,OsPDX1.3b, OsPDX1.2, PDX1.2,OsPDX3,OsPDX2 ,OsPDX1.3c, OsPDX1.3, PDX1.3,OsPDX1.3a, OsPDX1.1, PDX1.1,OsMDH1, OsLdh2, Ldh2
46825	31092192	Jiang Q., Zeng Y., Yu B., Cen W., Lu S., Jia P., Wang X., Qin B., Cai Z., Luo J.	The rice pds1 locus genetically interacts with partner to cause panicle exsertion defects and ectopic tillers in spikelets.	BMC Plant Biol.	19(1)	200	2019	PDS1	OsPDS1
46826	31087099	Hao Y., Wang Y., Wu M., Zhu X., Teng X., Sun Y., Zhu J., Zhang Y., Jing R., Lei J., Li J., Bao X., Wang C., Wang Y., Wan J.	A nucleus-localized PPR protein OsNPPR1 is important for mitochondrial function and endosperm development in rice.	J. Exp. Bot.			2019	MORC6C,MICU1,TWI1,_,FGR1,FLO2,_	OsMORC6c, MORC6, OsMORC6,OsMICU1,OsSRO1a, SRO1a, OsTWI1, RCD1, OsRCD1,,OsFGR1, OsNPPR1, NPPR1,flo2, flo3(t), Osflo2, Osflo3(t), Osflo-2, flo-2, FLO2-1, FLO2-2,
46827	31240493	Hazman M., Martin S?hnel, Sandra Sch?fer, Zumsteg J., Agn?s Lesot, Fr?deric Beltran, Marquis V., Herrgott L., Miesch L., Riemann M., Heitz T.	Characterization of Jasmonoyl-Isoleucine (JA-Ile) Hormonal Catabolic Pathways in Rice upon Wounding and Salt Stress.	Rice (N Y)	12(1)	45	2019	HAN1,CYP94D9,CYP94D10,CYP94E1,CYP94D5A,AH7,CYP94C2B,AH9,AH6,AH5,CYP94E2,AH1,ILL8,CYP94D5B,CYP94D15,CYP94D11,CYP94C2,CYP94D7,CYP94C4,CYP94D12,CYP94C3,CYP94E3,AH8,CYP94D6,JAR1,JAR2,AH3,AH2,CYP94B5	OsHAN1, OsCYP94B4, CYP94B4,OsCYP94D9,OsCYP94D10,OsCYP94E1,OsCYP94D5a,OsAH7,OsCYP94C2b,OsAH9,OsAH6,OsAH5,OsCYP94E2,OsAH1,OsILL8, OsAH4, AH4,OsCYP94D5b,OsCYP94D15,OsCYP94D11, OsCYPq1, CYPq1,OsCYP94C2, CYP94C2a, OsCYP94C2a,OsCYP94D7,OsCYP94C4,OsCYP94D12,OsCYP94C3,OsCYP94E3,OsAH8,OsCYP94D6,OsJAR1, OsGH3.5, GH3.5, OsGH3-5, GH3-5,OsJAR2, OsGH3.3, GH3.3, OsGH3-3, JAR2/GH3-3, GH3-3, OsGH3.3/OsJAR2,OsAH3,OsAH2,OsCYP94B5
46828	31189898	Yan H., Xu W., Xie J., Gao Y., Wu L., Sun L., Feng L., Chen X., Zhang T., Dai C., Li T., Lin X., Zhang Z., Wang X., Li F., Zhu X., Li J., Li Z., Chen C., Ma M., Zhang H., He Z.	Variation of a major facilitator superfamily gene contributes to differential cadmium accumulation between rice subspecies.	Nat Commun	10(1)	2562	2019	CD1	OsCd1
46829	31116744	Zhang F., Yu-Chan Zhang, Jian-You Liao, Yu Y., Yan-Fei Zhou, Yan-Zhao Feng, Yu-Wei Yang, Meng-Qi Lei, Bai M., Wu H., Yue-Qin Chen	The subunit of RNA N6-methyladenosine methyltransferase OsFIP regulates early degeneration of microspores in rice.	PLoS Genet.	15(5)	e1008120	2019	SIP2,RPT4A,MTA2,MTA3,MTA1,MTA4,RPT6	OsSIP2, OsFIP, FIP, OsFIP37, FIP37,OsRpt4a, Rpt4a,OsMTA2, OsIME4, IME4, OsMTB, MTB,OsMTA3, OsMTC, MTC,OsMTA1, OsMTA, MTA,OsMTA4, OsMTD, MTD,OsRpt6, Rpt6
46830	31289214	Yu Yang Peng, Li Li Liao, Liu S., Miao Miao Nie, Li J., Lu Dan Zhang, Jian Feng Ma, Zhi Chang Chen	Magnesium Deficiency Triggers SGR-Mediated Chlorophyll Degradation for Magnesium Remobilization.	Plant Physiol.	181(1)	262-275	2019	SGR,SGRL	sgr(t), sgr, OsSGR, OsSgr, SGR1, OsSGR1,OsSGRL
46831	30771248	Huang L., Chen L., Wang L., Yang Y., Rao Y., Ren D., Dai L., Gao Y., Zou W., Lu X., Zhang G., Zhu L., Hu J., Chen G., Shen L., Dong G., Gao Z., Guo L., Qian Q., Zeng D.	A Nck-associated protein 1-like protein affects drought sensitivity by its involvement in leaf epidermal development and stomatal closure in rice.	Plant J.	98(5)	884-897	2019	LPL3	OsLPL3, DS8, OsDS8
46832	31278262	Liu B., Liu Y., Wang B., Luo Q., Shi J., Gan J., Wen-Hui Shen, Yu Y., Dong A.	The transcription factor OsSUF4 interacts with SDG725 in promoting H3K36me3 establishment.	Nat Commun	10(1)	2999	2019	FLZ14,HSP58.7,_,SDG725,ZOS9-19,EF1,RFT1,_,CLPB-M,HD3A,_,PUB63	OsFLZ14,OsHsp58.7, OsHSP58.7, OsISC25, ISC25,OsFbox636, Fbox636, Os_F0774,  OsFBL63, FBL63,OsSDG725, OsSET8, ASHH2,OsSIP1, OsSUF4, SUF4, OsZOS9-19, SIP1,Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,FT-L 3, OsFTL3, FTL3, FT-L3, RFT, OsRFT1,,ClpB-m, OsClpB-m,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,OsDjB7, DjB7,OsPUB63,  OsPUB63, PUB63
46833	31331995	Che J., Yokosho K., Yamaji N., Jian Feng Ma	A Vacuolar Phytosiderophore Transporter Alters Iron and Zinc Accumulation in Polished Rice Grains.	Plant Physiol.	181(1)	276-288	2019	IRT2,IRT1,ZIFL7,ZIFL5,TOM1,YSL15,ZIFL12	OsIRT2, OsIRT1, OsZIP15, ZIP15,OsIRT1, ZIP10, OsZIP10, OsZIP12, ZIP12,OsZIFL7, OsTOM3, TOM3,OsZIFL5, OsTOM2, TOM2,OsTOM1, ZIFL4, OsZIFL4 ,OsYSL15, OsYs7,OsZIFL12, OsVMT, VMT, OsVMT/OsZIFL12
46834	30916395	Wu M., Ren Y., Cai M., Wang Y., Zhu S., Zhu J., Hao Y., Teng X., Zhu X., Jing R., Zhang H., Zhong M., Wang Y., Lei C., Zhang X., Guo X., Cheng Z., Lin Q., Wang J., Jiang L., Bao Y., Wang Y., Wan J.	Rice FLOURY ENDOSPERM10 encodes a pentatricopeptide repeat protein that is essential for the trans-splicing of mitochondrial nad1 intron 1 and endosperm development.	New Phytol.	223(2)	736-750	2019	NAD1,FLO10	nad1, Osnad1, nadI, nadIB,OsFLO10, WBG1, OsWBG1
46835	31084872	Bai B., Lu N., Li Y., Guo S., Yin H., He Y., Sun W., Li W., Xie X.	OsBBX14 promotes photomorphogenesis in rice by activating OsHY5L1 expression under blue light conditions.	Plant Sci.	284	192-202	2019		
46836	31292649	Park Y.C., Choi S.Y., Kim J.H., Jang C.S.	Molecular functions of rice cytosol-localized RING finger protein 1 in response to salt and drought and comparative analysis of its grass orthologs.	Plant Cell Physiol.			2019	DSNP1	OsCLR1, CLR1, OsDSNP1,  OsRING318, RING318
46837	31300138	Li X., Shi S., Tao Q., Tao Y., Miao J., Peng X., Li C., Yang Z., Zhou Y., Liang G.	OsGASR9 positively regulates grain size.and yield in rice (Oryza sativa).	Plant Sci.	286	17-27	2019	GASR9	OsGASR9
46838	31147815	Sun Y., Tian Y., Cheng S., Wang Y., Hao Y., Zhu J., Zhu X., Zhang Y., Yu M., Lei J., Bao X., Wu H., Wang Y., Wan J.	WSL6 encoding an Era-type GTP-binding protein is essential for chloroplast development in rice.	Plant Mol. Biol.	100(6)	635-645	2019	WSL6	OsWSL6
46839	31084874	Li X., Zhang Q., Yang X., Han J., Zhu Z.	OsANN3, a calcium-dependent lipid binding annexin is a positive regulator of ABA-dependent stress tolerance in rice.	Plant Sci.	284	212-220	2019		
46840	31257621	Zhu J., Li Y., Lin J., Wu Y., Guo H., Shao Y., Wang F., Wang X., Mo X., Zheng S., Yu H., Mao C.	crd1, an Xpo1 domain protein, regulates miRNA accumulation and crown root development in rice.	Plant J.			2019	SPL4,SDN1,SPL2,LCRN1,CRD1,WFP,MIR156A,SPL11,GLW7 ,AGO1A,SPL12	OsSPL4,OsSDN1,OsSPL2,OsSPL3, SPL3, OsLCRN1,CRD1/OsHST, OsCRD1, OsHST, HST,OsSPL14, SPL14, IPA1, WFP/IPA1, OsSPL14/WFP/IPA1, OsIPA1,  IPA1/OsSPL14,miR156a, OsmiR156a, osmiR156a, osa-miR156a, osa-MIR156a,OsSPL11,OsSPL13, SPL13, OsGLW7,OsAGO1a, AGO1a, AGO10, AGO1-1 ,OsSPL12, DLN176, OsDLN176
46841	31325169	Park Y.C., Lim S.D., Moon J.C., Jang C.S.	A rice really interesting new gene H2-type E3 ligase, OsSIRH2-14, enhances salinity tolerance via ubiquitin/26S proteasome-mediated degradation of salt-related proteins.	Plant Cell Environ.			2019		
46842	31207036	Zhou S.R., Xue H.W.	The rice PLATZ protein SHORT GRAIN6 determines grain size.by regulating spikelet hull cell division.	J Integr Plant Biol			2019		
46843	31321495	Xu X., Ren Y., Wang C., Zhang H., Wang F., Chen J., Liu X., Zheng T., Cai M., Zeng Z., Zhou L., Zhu S., Tang W., Wang J., Guo X., Jiang L., Chen S., Wan J.	OsVIN2 encodes a vacuolar acid invertase that affects grain size by altering sugar metabolism in rice.	Plant Cell Rep.			2019		
46844	31318417	Neogy A., Garg T., Kumar A., Dwivedi A.K., Singh H., Singh U., Singh Z., Prasad K., Jain M., Yadav S.R.	Genome-Wide Transcript Profiling Reveals an Auxin-Responsive Transcription Factor, OsAP2/ERF-40, Promoting Rice Adventitious Root Development.	Plant Cell Physiol.			2019		
46845	31290959	Li Z., Mo W., Jia L., Xu Y.C., Tang W., Yang W., Guo Y.L., Lin R.	Rice FLUORESCENT1 is involved in the Regulation of Chlorophyll.	Plant Cell Physiol.			2019	FLU2	OsFLU2
46846	31198970	Fu S., Fu L., Zhang X., Huang J., Yang G., Wang Z., Liu Y.G., Zhang G., Wu D., Xia J.	OsC2DP, a novel C2 domain-containing protein is required for salt tolerance in rice.	Plant Cell Physiol.			2019	C2DP78	OsC2DP, C2DP, OsC2DP78
46847	31264225	You X., Zhu S., Zhang W., Zhang J., Wang C., Jing R., Chen W., Wu H., Cai Y., Feng Z., Hu J., Yan H., Kong F., Zhang H., Zheng M., Ren Y., Lin Q., Cheng Z., Zhang X., Lei C., Jiang L., Wang H., Wan J.	Ospex5 regulates rice spikelet development through modulating jasmonic acid biosynthesis.	New Phytol.			2019		
46848	30891753	Zheng J., Wu H., Zhu H., Huang C., Liu C., Chang Y., Kong Z., Zhou Z., Wang G., Lin Y., Chen H.	Determining factors, regulation system, and domestication of anthocyanin biosynthesis in rice leaves.	New Phytol.	223(2)	705-721	2019	F3H1,CHS,_,F3'H,ANS,CHI3,C,_,RD	OsF3H-1, F3H-1, OsF3H1, OsF3H, F3H, OsF3H3, F3H3,CHS*, Oschs, chs, chas, OsCHS, OsCHS1, CHS1, OsPKS26, PKS26, OsCHS24, CHS24, OsCHS27, CHS27,OsP1, P1,OsF3'H, OsCYP75B3, CYP75B3, OsF3'H10, F3'H10, OsCYP71P3, CYP71P3,ANS, OsANS1, ANS1, LDOX, LDOX1, OsLDOX, OsLDOX1,gh1, GH1, OsGH1, OsCHI, Cfi, CHI, OsCHI3,C, Cp, OsC1, Os-C1, C1, OsMyb6, Myb6, OsPL6, PL6, OsGL1E, GL1E, Os2R_MYB63, 2R_MYB63, OsC1PLSr, C1PLSr,OsbHLH012, bHLH012, bHLH12, OsRb, Rb, Rb1, OsRb1,Rd, DFR, OsDFR, OS-DFR, OsDFR1, DFR1, DFR-1
46849	31015088	Zheng H., Wang Z., Tian Y., LingLong Liu, Lv F., Kong W., Bai W., Wang P., Wang C., Yu X., Liu X., Jiang L., Zhao Z., Wan J.	Rice albino 1, encoding a glycyl-tRNA synthetase, is involved in chloroplast development and establishment of the plastidic ribosome system in rice.	Plant Physiol. Biochem.	139	495-503	2019	RA1	OsRA1
46850	30936438	Jorge G?mez-Ariza, Brambilla V., Vicentini G., Landini M., Cerise M., Carrera E., Shrestha R., Chiozzotto R., Galbiati F., Caporali E., Isabel L?pez D?az, Fornara F.	A transcription factor coordinating internode elongation and photoperiodic signals in rice.	Nat Plants	5(4)	358-362	2019	PINE1	OsPINE1, DLN266, OsDLN266, DEC1, OsDEC1
46851	31221736	Zhao J.L., Zhang L.Q., Liu N., Xu S.L., Yue Z.L., Zhang L.L., Deng Z.P., Burlingame A.L., Sun D.Y., Wang Z.Y., Sun Y., Zhang S.W.	Mutual Regulation of Receptor-Like Kinase SIT1 and B'kappa-PP2A Shapes the Early Response of Rice to Salt Stress.	Plant Cell	31(9)	2131-2151	2019	SIT1,PP2A-B'IOTA,PP2A-B'BETA,PP2A-B'KAPPA	OsSIT1,OsPP2A-B'iota, OsB'iota, B'iota-PP2A,OsPP2A-B'beta, OsB'beta,OsPP2A-B'kappa, OsB'kappa, B'kappa-PP2A
46852	31200083	Li Z., Fu X., Tian Y., Xu J., Gao J., Wang B., Han H., Wang L., Zhang F., Zhu Y., Huang Y., Peng R., Yao Q.	Overexpression of a trypanothione synthetase gene from Trypanosoma cruzi, TcTryS, confers enhanced tolerance to multiple abiotic stresses in rice.	Gene	710	279-290	2019		
46853	31235564	Duan J., Yu H., Yuan K., Liao Z., Meng X., Jing Y., Liu G., Chu J., Li J.	Strigolactone promotes cytokinin degradation through transcriptional activation of <i>CYTOKININ OXIDASE/DEHYDROGENASE 9</i> in rice.	Proc. Natl. Acad. Sci. U.S.A.	116(28)	14319-14324	2019	RR2,RR1,CKX5,CKX3,RR6,WFP,RR5,CKX9,CKX4,CKX11,GN1A,D53,CKX8,CKX1	rr2, Osrr2, OsRR2, Rra10, OsRRA10,rr1, OsRR1, Rra9, OsRRA9,OsCKX5, ckx5,OsCKX3, ckx3,OsRR6, rr6, Rra6, OsRRA6,OsSPL14, SPL14, IPA1, WFP/IPA1, OsSPL14/WFP/IPA1, OsIPA1,  IPA1/OsSPL14,rr5, OsRR5, Rra4, OsRRA4,OsCKX9,OsCKX4, ckx4, OsSCRM, OsSCRM2, SCRM, SCRM2,OsCKX11,Gn1a, OsCKX2, CKX2, ckx2, Gn1a/OsCKX2, Os CKX2, CKX2/Gn1a,D53(D K3), DK3, Dwf34, SMXL6/7/8, OsD53,OsCKX8,OsCKX1
46854	31227607	Maity K., Heumann J.M., McGrath A.P., Kopcho N.J., Hsu P.K., Lee C.W., Mapes J.H., Garza D., Krishnan S., Morgan G.P., Hendargo K.J., Klose T., Rees S.D., Medrano-Soto A., Saier M.H., Pi?eros M., Komives E.A., Schroeder J.I., Chang G., Stowell M.H.B.	Cryo-EM structure of <EM class="new_gene"><EM class="new_gene">OSCA1</EM>.2</EM> from <i>Oryza sativa</i> elucidates the mechanical basis of potential membrane hyperosmolality gating.	Proc. Natl. Acad. Sci. U.S.A.	116(28)	14309-14318	2019	OSCA1.2	OsOSCA1.2, OsIOSCA1.2, OsDDP6, DDP6, OsDDP6.1, OsDDP6.2
46855	31198964	Chou H.L., Tian L., Fukuda M., Kumamaru T., Okita T.W.	The Role of RNA Binding Protein OsTudor-SN in Post-Transcriptional Regulation of Seed Storage Proteins and Endosperm Development.	Plant Cell Physiol.			2019		
46856	31245237	Rolly N.K., Lee S.U., Imran Q.M., Hussain A., Mun B.G., Kim K.M., Yun B.W.	Nitrosative stress-mediated inhibition of <i>OsDHODH1</i> gene expression suggests roots growth reduction in rice (<i>Oryza sativa</i> L.).	3 Biotech	9(7)	273	2019		
46857	31371260	Huang X., Run M., Sun M.X.	OsGCD1, a novel player in rice intine construction.	J Genet Genomics	46(7)	359-362	2019		
46858	31054181	Panthapulakkal Narayanan S., Liao P., Taylor P.W.J., Lo C., Chye M.L.	Overexpression of a Monocot Acyl-CoA-Binding Protein Confers Broad-Spectrum Pathogen Protection in a Dicot.	Proteomics	19(12)	e1800368	2019	ACBP5	OsACBP5
46859	31220626	Wen K., Chen Y., Zhou X., Chang S., Feng H., Zhang J., Chu Z., Han X., Li J., Liu J., Xi C., Zhao H., Han S., Wang Y.	OsCPK21 is required for pollen late-stage development in rice.	J. Plant Physiol.	240	153000	2019		
46860	31199561	Fayos I., Mieulet D., Petit J., Meunier A.C., P?rin C., Nicolas A., Guiderdoni E.	Engineering meiotic recombination pathways in rice.	Plant Biotechnol. J.			2019		
46861	31192079	Nawaz G., Han Y., Usman B., Liu F., Qin B., Li R.	Knockout of <i>OsPRP1</i>, a gene encoding proline-rich protein, confers enhanced cold sensitivity in rice (<i>Oryza sativa</i> L.) at the seedling stage.	3 Biotech	9(7)	254	2019		
46862	31238869	Yuan X., Wang H., Cai J., Bi Y., Li D., Song F.	Rice NAC transcription factor ONAC066 functions as a positive regulator of drought and oxidative stress response.	BMC Plant Biol.	19(1)	278	2019	DREB2A,NAC66	OsDREB2A, OsDREB2a, ERF40, OsERF#040, OsERF040, OsERF40, AP2/EREBP#167, AP2/EREBP167,ONAC066, ONAC66
46863	31175978	Muthuramalingam P., Jeyasri R., Bharathi RKAS., Suba V., Pandian S.T.K., Ramesh M.	Global integrated omics expression analyses of abiotic stress signaling HSF transcription factor genes in Oryza sativa L.: An in silico approach.	Genomics			2019	HSFA2D,HSFA2E,HSFA6,HSFB4C,HSFC1A,HSFB4D,HSFA9,HSFC1B,HSFA5,HSFA7,HSFA2A,HSFB2A,HSFB4A,SPL7,HSFA1,HSFB1,HSFA2B,HSFA3,HSFB2C,HSFB2B,HSFC2B,HSFA4A,HSFA2C,HSFC2A,HSFB4B	HSfA2d, OsHsfA2d, OsHsf-08, rHsf7, HSF08, OsHSF8, HSF8, HSF7, OsHSF7, OsHSFA2dI, OsHSFA2dII, OsHSFA2dIII, OsHsfA6b, HsfA6b, OsHsf2d, Hsf2d,HSfA2e, OsHsfA2e, OsHsf-12, OsHSF12, HSF12, OsHsfA2a, HsfA2a,HSfA6, OsHsfA6, OsHsf-17, HSF17, OsHSF17, HSFA6A, OsHsfA2f, HsfA2f, OsHsfA7b, HsfA7b,HSfB4c, OsHsfB4c, OsHsf-22, HSF22, OsHSF22,HSfC1a, OsHsfC1a, OsHsf-02, OsHSF2, HSF2, rHsf13, HSF02, HSF13,OsHsfB4d, HSfB4d, OsHsf-10, HSF10, OsHSF10,HSfA9, OsHsfA9, OsHsf-09, rHsf8, HSF09, OsHSF9, HSF9, HSF8, OsHsfA8, HsfA8 ,OsHsfC1b, HsfC1b, HSF03, OsHsf-03, OsHSF3, HSF3, HSF11,  rHsf11,HSfA5, OsHsfA5, OsHsf-06, HSF06, OsHSF6, HSF6,OsHsfA7, OsHsf-01, HSFA6B, HSF01, OsHSF1, HSF1, OsEnS-9, OsHsfA7a, HsfA7a ,HSfA2a, OsHsfA2a, OsHsf-11, rHsf4, OsHSF11, HSF11, HSF4, RHSP2, OsHsfA2a-1, OsHsfA2a-2, OsHsfA2a-3, OsHsfA2a-4, OsHsfA2a-5, OsHsfA2a-6, OsHsfA2e, HsfA2e ,HSfB2a, OsHsfB2a, OsHsf-14, rHsf1, HSF1, HSF14, OsHSF14,HSfB4a, OsHsfB4a, OsHsf-20, HSF20, OsHSF20,spl7, HSFA4D, HSF10, HSF15, OsHSF15, SP17, OsHsf-15, rHsf10, OsHsfA4d, HSfA4d, lrd13, HSF1,OsHsfA1, HsfA1, OsHSF13, HSF13, OsHsf-13, HSF3, rHsf3, OsHsfA1a,HSfB1, OsHsfB1, OsHsf-23, HSF23, OsHsf23, OsHSF23, TBF1 ,HSfA2b, OsHsfA2b, OsHsf-18, rHsf5, HS1, HSF18, OsHSF18, HSF5, OsHSF5,HSfA3, OsHsfA3, OsHsf-07, HSF07, OsHSF7, HSF7, DLN57, OsDLN57,HSfB2c, OsHsfB2c, OsHsf-24, HSF24, OsHSF24 ,HSfB2b, OsHsfB2b, OsHsf-21, rHsf2, HSF2, HSF21, OsHSF21, OsHSF7,HSfC2b, OsHsfC2b, OsHsf-16, HSF16, OsHSF16,OsHsfA4a, OsHsf-04, HSFA4B, HSF04, OsHSF4, HSF4, HSF9, OsHsfA4b, OsHSF9,HSfA2c, OsHsfA2c, OsHsf-25, rHsf6, OsHSF6, HSF25, OsHSF25, HSF6, OsHsfA6a, HsfA6a ,HSfC2a, OsHsfC2a, OsHsf-05, HSF05, OsHSF5, HSF5,HSFB4b, OsHSFB4b, OsHsf-19, OsHSF19, rHsf12, OsHSF12, HSF12, HSF19
46864	31208338	Yang S., Xu K., Chen S., Li T., Xia H., Chen L., Liu H., Luo L.	A stress-responsive bZIP transcription factor OsbZIP62 improves drought and oxidative tolerance in rice.	BMC Plant Biol.	19(1)	260	2019	NAC122,BZIP62,GL1-6,SAPK6,SAPK2,DSM2,SAPK1	OsNAC10, NAC10, ONAC122, NAC122, OsSNAC10, SNAC10,OsbZIP62, OsABF8, OsEEL, EEL,Os0053, OsGL1-6,OsSAPK6, OSRK1, OsSnRK2.6, SnRK2.6,OsSAPK2, OsSnRK2.2, SnRK2.2,OsDSM2, OsBCH1, BCH1, OsHYD3, HYD3,OsSAPK1, OsSnRK2.1, SnRK2.1
46865	31316541	Liu S., Fu H., Jiang J., Chen Z., Gao J., Shu H., Zhang S., Yang C., Liu J.	Overexpression of a CPYC-Type Glutaredoxin, <i>OsGrxC2.2</i>, Causes Abnormal Embryos and an Increased grain weight in Rice.	Front Plant Sci	10	848	2019	HB4,SCR,ROC1,OSH1,PNH1,GRX	OSHB4, OsHox32, HOX32, OsHB4, Oshox32, PHB3, OsHDZ13, OsHDZIP13, HDZ13, HDZIP13,OsSCR, OsSCR2, SCR2, OsGRAS-51, OsGRAS51, GRAS-51, GRAS51,Roc1(t), GL2-1, OsHDZ23, OsHDZIP23, HDZ23, HDZIP23,OSKN1, Oskn1, OsKN1, OSH1/Oskn1, HB75,OsPNH1,grx, OsGRX, OsGRX14, OsGrx9, OsGrxC2;2, GrxC2;2, OsGrxC2.2, GrxC2.2
46866	31212102	Joo J., Choi D.H., Lee Y.H., Seo H.S., Song S.I.	The rice SUMO conjugating enzymes OsSCE1 and OsSCE3 have opposing effects on drought stress.	J. Plant Physiol.	240	152993	2019		
46867	31219637	Wang W., Pan Q., Tian B., He F., Chen Y., Bai G., Akhunova A., Trick H.N., Akhunov E.	Gene editing of the wheat homologs of TONNEAU1-recruiting motif encoding gene affects grain shape and weight in wheat.	Plant J.			2019		
46868	31207967	Uji Y., Kashihara K., Kiyama H., Mochizuki S., Akimitsu K., Gomi K.	Jasmonic Acid-Induced VQ-Motif-Containing Protein OsVQ13 Influences the OsWRKY45 Signaling Pathway and grain size by Associating with OsMPK6 in Rice.	Int J Mol Sci	20(12)		2019	GSTU4,_,WRKY62,OPR5,PRX72,WRKY45,VQ13,DSG1,MADS2,ERF96,POXA,GNS6,NAC5,SGT,CYP709C9	OsGSTU4, GST4,,OsWRKY62, OsWRKY62.1, OsWRKY62.2, XB10, OsWRKY62-1, OsWRKY62-2,OsOPR5, OsOPR6, OsOPR06-2, OPR4,prx72, OsPrx72,OsWRKY45, OsWRKY45-1, OsWRKY45-2, WRKY45-1, WRKY45-2,OsVQ13,OsMAPK6, MAPK6, OsMPK6, OsSIPK, SIPK, OsMAPK1, MAPK1, MPK1, OsMPK1, MPK6, OsDSG1,OsMADS2, RMADS219, NMADS1, PI2, nmads1, DLN33, OsDLN33,DERF12, OsDERF12, OsERF#096, OsERF096, OsERF96, AP2/EREBP#116, AP2/EREBP116, OsAP2, OsAP2.1, OsAP2.2, OsERF36,poxA, prx126, OsPrx126, prxRPA, RPA,Gns6, OsGns6, OsPR2, PR2,OsNAC5, NAC71, ONAC071, ONAC009, ONAC9, ONAC020, ONAC20, OnNAC5*, OnNAC5, OsNAC5/ONAC009,OsSGT, UGT74H3, OsUGT74H3,OsCYP709C9
46869	31248369	Liu X.S., Feng S.J., Zhang B.Q., Wang M.Q., Cao H.W., Rono J.K., Chen X., Yang Z.M.	OsZIP1 functions as a metal efflux transporter limiting excess zinc, copper and cadmium accumulation in rice.	BMC Plant Biol.	19(1)	283	2019	ZIP1,SDG714,TA2,CMT2,DRM2,MET1A	OsZIP1,OsSDG714, OsSET5, OsSUVH4,ROS1A, ROS1a, DME1, OsROS1A, OsROS1, ROS1, mOsROS1, ROS1A/DNG702, DNG702, OsDNG702,OsCMT2, OsCMT3a, CMT3a,OsDRM2, osdrm2, DRM2-1,OsMET1a, OsMET1-1, MET1a, MET1-1, OsMET1, OsDMT702, DMT702
46870	31189658	Scafaro A.P., Bautsoens N., den Boer B., Van Rie J., Gall? A.	A Conserved Sequence from Heat-Adapted Species Improves Rubisco activase Thermostability in Wheat.	Plant Physiol.	181(1)	43-54	2019		
46871	31316534	Chen B.X., Peng Y.X., Gao J.D., Zhang Q., Liu Q.J., Fu H., Liu J.	Coumarin-Induced Delay of Rice Seed Germination Is Mediated by Suppression of Abscisic Acid Catabolism and Reactive Oxygen Species Production.	Front Plant Sci	10	828	2019	NCED2,NCED1,NCED1,ABA8OX3,ABA8OX2	OsNCED2, OsNced2, OsCCD4b, CCD4b, OsCCD4c, CCD4c,OSNCED1, OsNCED-1, OsNCED3, OsNced3, NCED3, OsNCED9, NCED9,OsNCED1, OsCCD4a, CCD4a,OsABA8OX3, OsABA8ox3, CYP707A7, OsCYP707A7, OsAba-ox3, OsABA8ox3, OsABA8'ox3, ABA8'ox3, OsABAX3, ABAX3, OsABA8'OH3, ABA8'OH3,OsABA8OX2, OsABA8ox2, CYP707A6, OsCYP707A6, OsAba-ox2, OsABA8ox2, OsABA8OH2, ABA8OH2, ABA8'-OH2, OsABA8'ox2, ABA8'ox2, OsABAX2, ABAX2, OsABA8'OH2, ABA8'OH2
46872	31221084	Wang X., Yang G., Shi M., Hao D., Wei Q., Wang Z., Fu S., Su Y., Xia J.	Disruption of an amino acid transporter LHT1 leads to growth inhibition and low yields in rice.	BMC Plant Biol.	19(1)	268	2019	RAC3,HT	OsRac3,OsHT, OsLHT1, LHT1
46873	31250531	Zhang H., Tan X., Li L., He Y., Hong G., Li J., Lin L., Cheng Y., Yan F., Chen J., Sun Z.	Suppression of auxin signalling promotes rice susceptibility to Rice black streaked dwarf virus infection.	Mol. Plant Pathol.	20(8)	1093-1104	2019	TIR1,RBOHD,PIN1B,PIN5A,_,OG1,TIFY11D,GH3-8,GH3-2,BHLH9,JIOSPR10,IAA7,IAA20,IAA31,YUCCA1,YUCCA6,RBOHA,RBOHE,MIR393,RBOHB,PR1B	OsTIR1, OsFbox248, Fbox248, Os_F071, AFB,  OsFBL21, FBL21,rbohD, OsrbohD, Os rbohD, OsRbohD, OsNox4, OsRboh4, Rboh4,PIN1A, OsPIN1A, OsPIN1a, REH1, OsPIN1, OsPIN1b, REH1/OsPIN1,OsPIN5a, OsPIN6,OsPILS7a, PILS7a, OsPINL2,OsOPR7, OPR7, OsOPR13, OsOPR3, OsOPR5, OsOPR9, OsOPR08-1,  OPR13, OPR3, OPR5, OPR9, OPR08-1, OsOPR8, OPR8,OsTIFY11d, OsJAZ1, JAZ1, OsJAZ 12, OsJAZ12, JAZ12,OsGH3-8, OsMGH3, OsGH3.8, GH3.8, OsGH3-2,OsGH3-2, OsGH3.2, GH3.2,OsbHLH009, bHLH009, OsMYC2, MYC2,JIOsPR10, OsPR10, PR10, OsJiPR10, JiPR10, OsPR10c, PR10c,OsIAA7, DLN51, OsDLN51,OsIAA20,OsIAA3, IAA3, OsIAA31, OsIAA30, IAA30,OsYUCCA1, OsYUC1, YUC1,OsYUCCA6, OsYUC6, YUC6,rbohA, OsrbohA, Os rbohA, OsRbohA, OsNox2, Nox2, OsRboh2, Rboh2,rbohE, OsrbohE, Os rbohE, OsRbohE, OsNox3, Nox3, OsRboh3, Rboh3,OsmiR393, osa-MIR393, osa-MIR393a, OsmiR393a, miR393a ,rbohB, OsrbohB, Os rbohB, OsRbohB, OsNox1, Nox1, Os-RbohB, RbohB, OsRboh1, Rboh1,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1, OsPR1a, PR1a
46874	31519258	Xu T., Cao L., Zeng J., Franco C.M.M., Yang Y., Hu X., Liu Y., Wang X., Gao Y., Bu Z., Shi L., Zhou G., Zhou Q., Liu X., Zhu Y.	The antifungal action mode of the rice endophyte Streptomyces hygroscopicus OsiSh-2 as a potential biocontrol agent against the rice blast pathogen.	Pestic Biochem Physiol	160	58-69	2019		
46875	31200645	Qian J., Chen Y., Xu Y., Zhang X., Kang Z., Jiao J., Zhao J.	Interactional similarities and differences in the protein complex of PCNA and DNA replication factor C between rice and Arabidopsis.	BMC Plant Biol.	19(1)	257	2019	RFC3,RFC2,RFC5,RFC4,RFC1,PCNA	OsRFC3,OsRFC2,OsRFC5,OsRFC4,OsRFC1,OsPCNA
46876	31218181	Solanki M., Sinha A., Shukla L.I.	Optimization of in vitro culture media for improvement in yield of Navara ancient Indian medicinal rice.	3 Biotech	9(7)	270	2019		
46877	31303846	Samara Shekar Reddy S., Singh B., Peter A.J., Venkateswar Rao T.	Retraction notice to "Production of transgenic local rice cultivars (<i>Oryza sativa</i> L.) for improved drought tolerance using <i>Agrobacterium</i> mediated transformation" [Saudi J. Biol. Sci. 25 (2018) 1535-1545].	Saudi J Biol Sci	26(5)	1093	2019		
46878	31222437	Tsujimura Y., Sugiyama S., Otsuka K., Htun T.M., Numaguchi K., Castillo C., Akagi T., Ishii T., Ishikawa R.	Detection of a novel locus involved in non-seed-Shattering behaviour of Japonica rice cultivar, Oryzasativa 'Nipponbare'.	Theor. Appl. Genet.	132(9)	2615-2623	2019		
46879	31118231	Ishimoto K., Sohonahra S., Kishi-Kaboshi M., Itoh J.I., Hibara K.I., Sato Y., Watanabe T., Abe K., Miyao A., Nosaka-Takahashi M., Suzuki T., Ta N.K., Shimizu-Sato S., Suzuki T., Toyoda A., Takahashi H., Nakazono M., Nagato Y., Hirochika H., Sato Y.	Specification of basal region identity after asymmetric zygotic division requires mitogen-activated protein kinase 6 in rice.	Development	146(13)		2019		
46880	31226870	Zhou S., Chen M., Zhang Y., Gao Q., Noman A., Wang Q., Li H., Chen L., Zhou P., Lu J., Lou Y.	<i>OsMKK3,</i> a Stress-Responsive Protein Kinase, Positively Regulates Rice Resistance to <i>Nilaparvata lugens</i> via Phytohormone Dynamics.	Int J Mol Sci	20(12)		2019		
46881	31243851	Lu X., Zhou Y., Fan F., Peng J., Zhang J.	Coordination of light, circadian clock with temperature: The potential mechanisms regulating chilling tolerance in rice.	J Integr Plant Biol			2019		
46882	31252135	Wang X., Sun W., Ma X.	Differential impacts of copper oxide nanoparticles and Copper(II) ions on the uptake and accumulation of arsenic in rice (Oryza sativa).	Environ. Pollut.	252(Pt B)	967-973	2019		
46883	31152173	Manrique S., Friel J., Gramazio P., Hasing T., Ezquer I., Bombarely A.	Genetic insights into the modification of the pre-fertilization mechanisms during plant domestication.	J. Exp. Bot.	70(11)	3007-3019	2019		
46884	31257155	Gao X.Q., Wang N., Wang X.L., Zhang X.S.	Architecture of Wheat Inflorescence: Insights from Rice.	Trends Plant Sci.	24(9)	802-809	2019		
46885	31181873	Chomean S., Sukanto T., Piemsup A., Chaiya J., Saenguthai K., Kaset C.	Evaluation of black glutinous rice (Oryza sativa L) extract as a novel nuclear stain for human sperm head assessment by microscopic examination.	Clin Exp Reprod Med	46(2)	60-66	2019		
46886	31168665	Han J.Y., Baek S.H., Jo H.J., Yun D.W., Choi Y.E.	Genetically modified rice produces ginsenoside aglycone (protopanaxadiol).	Planta	250(4)	1103-1110	2019		
46887	31214892	Zhang C., Huang M., Sang X., Li P., Ling Y., Zhao F., Du D., Li Y., Yang Z., He G.	Association between sheath blight resistance and chitinase activity in transgenic rice plants expressing McCHIT1 from bitter melon.	Transgenic Res.	28(3-4)	381-390	2019		
46888	30715478	Sugiyama S.H., Yasui Y., Ohmori S., Tanaka W., Hirano H.Y.	Rice Flower Development Revisited: Regulation of Carpel Specification and Flower Meristem Determinacy.	Plant Cell Physiol.	60(6)	1284-1295	2019		
46889	31207950	He X., Feng X., Sun D., Liu F., Bao Y., He Y.	Rapid and Nondestructive Measurement of Rice Seed Vitality of Different Years Using Near-Infrared Hyperspectral Imaging.	Molecules	24(12)		2019		
46890	31248374	Cong W., Miao Y., Xu L., Zhang Y., Yuan C., Wang J., Zhuang T., Lin X., Jiang L., Wang N., Ma J., Sanguinet K.A., Liu B., Rustgi S., Ou X.	Transgenerational memory of gene expression changes induced by heavy metal stress in rice (Oryza sativa L.).	BMC Plant Biol.	19(1)	282	2019		
46891	31229800	Shen C., Tang S., Meng Q.	Cadmium removal from rice protein via synergistic treatment of rhamnolipids and F127/PAA hydrogels.	Colloids Surf B Biointerfaces	181	734-739	2019		
46892	31316532	Kopec P.M., Karlowski W.M.	Sequence Dynamics of Pre-mRNA G-Quadruplexes in Plants.	Front Plant Sci	10	812	2019		
46893	31238948	Bresolin A.P.S., Dos Santos RS., Wolter R.C.D., de Sousa RO., da Maia LC., Costa de Oliveira A.	Iron tolerance in rice: an efficient method for performing quick early genotype screening.	BMC Res Notes	12(1)	361	2019		
46894	31176485	He C., Chen J., Wang H., Wan Y., Zhou J., Dan Z., Zeng Y., Xu W., Zhu Y., Huang W., Yin L.	Crystal structures of rice hexokinase 6 with a series of substrates shed light on its enzymatic mechanism.	Biochem. Biophys. Res. Commun.	515(4)	614-620	2019		
46895	31300137	Nasir F., Shi S., Tian L., Chang C., Ma L., Li X., Gao Y., Tian C.	Strigolactones shape the rhizomicrobiome in rice (Oryza sativa).	Plant Sci.	286	118-133	2019		
46896	31279219	Zhu C.Q., Hu W.J., Cao X.C., Zhu L.F., Bai Z.G., Liang Q.D., Huang J., Jin Q.Y., Zhang J.H.	Hydrogen peroxide alleviates P starvation in rice by facilitating P remobilization from the root cell wall.	J. Plant Physiol.	240	153003	2019		
46897	31181814	Kong W., An B., Zhang Y., Yang J., Li S., Sun T., Li Y.	Sugar Transporter Proteins (STPs) in Gramineae Crops: Comparative Analysis, Phylogeny, Evolution, and Expression Profiling.	Cells	8(6)		2019		
46898	31252106	Wang Y., Wang L., Ma C., Wang K., Hao Y., Chen Q., Mo Y., Rui Y.	Effects of cerium oxide on rice seedlings as affected by co-exposure of cadmium and salt.	Environ. Pollut.	252(Pt B)	1087-1096	2019		
46899	31154490	Nie H., Zhang L., Zhuang H., Yang X., Qiu D., Zeng H.	Secreted protein mohrip2 is required for full virulence of Magnaporthe oryzae and modulation of rice immunity.	Appl. Microbiol. Biotechnol.	103(15)	6153-6167	2019		
46900	31481219	Chuamnakthong S., Nampei M., Ueda A.	Characterization of Na+ exclusion mechanism in rice under saline-alkaline stress conditions.	Plant Sci.	287	110171	2019		
46901	31187104	Chai H.H., Chen F., Zhang S.J., Li Y.D., Lu Z.S., Kang Y.J., Yu L.	Multi-chamber petaloid root-growth chip for the non-destructive study of the development and physiology of the fibrous root system of Oryza sativa.	Lab Chip	19(14)	2383-2393	2019		
46902	31245236	Verma G., Mondal K.K., Kulshreshtha A., Sharma M.	XopR T3SS-effector of <i>Xanthomonas oryzae</i> pv. <i>oryzae</i> suppresses cell death-mediated plant defense response during bacterial blight development in rice.	3 Biotech	9(7)	272	2019		
46903	31160789	Vemireddy L.R., Kadambari G., Reddy G.E., Kola V.S.R., Ramireddy E., Puram V.R.R., Badri J., Eslavath S.N., Bollineni S.N., Naik B.J., Chintala S., Pottepalem R., Akkareddy S., Nagireddy R., Reddy L.V.B., Bodanapu R., Lekkala S.P., Chakravartty N., Siddiq E.A.	Uncovering of natural allelic variants of key yield contributing genes by targeted resequencing in rice (Oryza sativa L.).	Sci Rep	9(1)	8192	2019		
46904	31346413	Al-Hadeethi I., Li Y., Odhafa A.K.H., Al-Hadeethi H., Seneweera S., Lam S.K.	Assessment of grain quality in terms of functional group response to elevated [CO2], water, and nitrogen using a meta-analysis: Grain protein, zinc, and iron under future climate.	Ecol Evol	9(13)	7425-7437	2019		
46905	31481838	Phung H.D., Sugiura D., Sunohara H., Makihara D., Kondo M., Nishiuchi S., Doi K.	QTL analysis for carbon assimilate translocation-related traits during maturity in rice (<i>Oryza sativa</i> L.).	Breed. Sci.	69(2)	289-296	2019		
46906	31274454	Wang P., McKenna B.A., Menzies N.W., Li C., Glover C.J., Zhao F.J., Kopittke P.M.	Minimizing experimental artefacts in synchrotron-based X-ray analyses of Fe speciation in tissues of rice plants.	J Synchrotron Radiat	26(Pt 4)	1272-1279	2019		
46907	30992319	Yu H., Campbell M.T., Zhang Q., Walia H., Morota G.	Genomic Bayesian Confirmatory Factor Analysis and Bayesian Network To Characterize a Wide Spectrum of Rice Phenotypes.	G3 (Bethesda)	9(6)	1975-1986	2019		
46908	31227696	Liao Z., Yu H., Duan J., Yuan K., Yu C., Meng X., Kou L., Chen M., Jing Y., Liu G., Smith S.M., Li J.	SLR1 inhibits MOC1 degradation to coordinate tiller number and plant height in rice.	Nat Commun	10(1)	2738	2019		
46909	31238551	Farooq M.U., Tang Z., Zheng T., Asghar M.A., Zeng R., Su Y., Ei H.H., Liang Y., Zhang Y., Ye X., Jia X., Zhu J.	Cross-Talk between Cadmium and Selenium at Elevated Cadmium Stress Determines the Fate of Selenium Uptake in Rice.	Biomolecules	9(6)		2019		
46910	31095858	Ling Y., Ang L., Weilin Z.	Current understanding of the molecular players involved in resistance to rice planthoppers.	Pest Manag. Sci.	75(10)	2566-2574	2019		
46911	31245242	Pranathi K., Kalyani M.B., Viraktamath B.C., Balachandran S.M., Hajira S.K., Koteshwar Rao P., Kulakarni S.R., Rekha G., Anila M., Koushik MBVN., Senguttuvel P., Hariprasad A.S., Mangrautia S.K., Madhav M.S., Sundaram R.M.	Expression profiling of immature florets of IR58025A, a wild-abortive cytoplasmic male sterile line of rice and its cognate, isonuclear maintainer line, IR58025B.	3 Biotech	9(7)	278	2019		
46912	31266730	Xu X., Wu K., Xu R., Yu J., Wang J., Zhao Y., Wang Y., Song W., Wang S., Gao Z., Zhong Y., Li X., Liao H., Fu X.	Pyramiding of the dep1-1 and NAL1NJ6 alleles achieves sustainable improvements in nitrogen-use efficiency and grain yield in japonica rice breeding.	J Genet Genomics	46(6)	325-328	2019		
46913	31290928	Campbell M., Momen M., Walia H., Morota G.	Leveraging Breeding Values Obtained from Random Regression Models for Genetic Inference of Longitudinal Traits.	Plant Genome	12(2)		2019		
46914	31234345	Yu Z., Jia D., Liu T.	Polyamine Oxidases Play Various Roles in Plant Development and Abiotic Stress Tolerance.	Plants (Basel)	8(6)		2019		
46915	31252009	Tangsrianugul N., Wongsagonsup R., Suphantharika M.	Physicochemical and rheological properties of flour and starch from Thai pigmented rice cultivars.	Int. J. Biol. Macromol.	137	666-675	2019		
46916	31255622	Lin L., Pan T., Liu Q., Wei C.	Cooking, morphological, mechanical and digestion properties of cooked rice with suppression of starch branching enzymes.	Int. J. Biol. Macromol.	137	187-196	2019		
46917	31226542	Ali B., Pantha S., Acharya R., Ueda Y., Wu L.B., Ashrafuzzaman M., Ishizaki T., Wissuwa M., Bulley S., Frei M.	Enhanced ascorbate level improves multi-stress tolerance in a widely grown indica rice variety without compromising its agronomic characteristics.	J. Plant Physiol.	240	152998	2019		
46918	31253955	Wei J., Xie W., Li R., Wang S., Qu H., Ma R., Zhou X., Jia Z.	Analysis of trait heritability in functionally partitioned rice genome.	Heredity			2019		
46919	31160691	Razzaque S., Elias S.M., Haque T., Biswas S., Jewel GMNA., Rahman S., Weng X., Ismail A.M., Walia H., Juenger T.E., Seraj Z.I.	Gene Expression analysis associated with salt stress in a reciprocally crossed rice population.	Sci Rep	9(1)	8249	2019		
46920	31228579	Peng Y., Zhang Y., Gui Y., An D., Liu J., Xu X., Li Q., Wang J., Wang W., Shi C., Fan L., Lu B., Deng Y., Teng S., He Z.	Elimination of a Retrotransposon for Quenching Genome Instability in Modern Rice.	Mol Plant			2019		
46921	31093669	Ito T.	Functional Dissection of Class C Genes in Rice.	Plant Cell Physiol.	60(6)	1164-1165	2019		
46922	31199564	Zong W., Yang J., Fu J., Xiong L.	Synergistic regulation of drought-responsive genes by transcription factor OsbZIP23 and histone modification in rice.	J Integr Plant Biol			2019		
46923	31249338	Sandhu N., Subedi S.R., Singh V.K., Sinha P., Kumar S., Singh S.P., Ghimire S.K., Pandey M., Yadaw R.B., Varshney R.K., Kumar A.	Deciphering the genetic basis of root morphology, nutrient uptake, yield, and yield-related traits in rice under dry direct-seeded cultivation systems.	Sci Rep	9(1)	9334	2019		
46924	31180503	Lee J.S., Velasco-Punzalan M., Pacleb M., Valdez R., Kretzschmar T., McNally K.L., Ismail A.M., Sta Cruz PC., Hamilton N.R.S., Hay F.R.	Variation in seed longevity among diverse Indica rice varieties.	Ann. Bot.			2019		
46925	31165331	Li Z., Xue Y., Zhou H., Li Y., Usman B., Jiao X., Wang X., Liu F., Qin B., Li R., Qiu Y.	High-resolution mapping and breeding application of a novel brown planthopper resistance gene derived from wild rice (Oryza. rufipogon Griff).	Rice (N Y)	12(1)	41	2019		
46926	31237422	Li Z., Wang F., Li J.F.	Targeted Transcriptional Activation in Plants Using a Potent Dead Cas9-Derived Synthetic Gene Activator.	Curr Protoc Mol Biol	127(1)	e89	2019		
46927	31175394	Banerjee A., Roychoudhury A.	Differential regulation of defence pathways in aromatic and non-aromatic indica rice cultivars towards fluoride toxicity.	Plant Cell Rep.	38(10)	1217-1233	2019		
46928	31229897	Hou Y., Wang Y., Tang L., Tong X., Wang L., Liu L., Huang S., Zhang J.	SAPK10-Mediated Phosphorylation on WRKY72 Releases Its Suppression on Jasmonic Acid Biosynthesis and Bacterial Blight Resistance.	iScience	16	499-510	2019		
46929	31182543	Emerick K., Ronald P.C.	<i>Sub1</i> Rice: Engineering Rice for Climate Change.	Cold Spring Harb Perspect Biol			2019		
46930	31186598	Gars J., Ward P.S.	Corrigendum to 'Can differences in individual learning explain patterns of technology adoption? Evidence on heterogeneous learning patterns and hybrid rice adoption in Bihar, India' [World Dev. 115 (2018) 178-189].	World Dev	118	15	2019		
46931	31159719	Li T., Fang Z., Peng H., Zhou J., Liu P., Wang Y., Zhu W., Li L., Zhang Q., Chen L., Li L., Liu Z., Zhang W., Zhai W., Lu L., Gao L.	Application of high-throughput amplicon sequencing-based SSR genotyping in genetic background screening.	BMC Genomics	20(1)	444	2019		
46932	31257428	Adachi S., Yamamoto T., Nakae T., Yamashita M., Uchida M., Karimata R., Ichihara N., Soda K., Ochiai T., Ao R., Otsuka C., Nakano R., Takai T., Ikka T., Kondo K., Ueda T., Ookawa T., Hirasawa T.	Genetic architecture of leaf photosynthesis in rice revealed by different types of reciprocal mapping populations.	J. Exp. Bot.			2019		
46933	31222528	Jiang S., Wang D., Yan S., Liu S., Liu B., Kang H., Wang G.L.	Dissection of the Genetic Architecture of Rice Tillering using a Genome-wide Association Study.	Rice (N Y)	12(1)	43	2019		
46934	30994945	Chang C., Yin R., Zhang H., Yao L.	Bioaccumulation and Health Risk Assessment of Heavy Metals in the Soil-Rice System in a Typical Seleniferous Area in Central China.	Environmental Toxicology and Chemistry	38(7)	1577-1584	2019		
46935	31204722	Luo Y., Lao L., Ai B., Xie J., Zhang F.	Development of a drought stress-resistant rice restorer line through <i>Oryza sativa-rufipogon</i> hybridization.	J. Genet.	98(2)		2019		
46936	31239485	Vesely F.M., Paleari L., Movedi E., Bellocchi G., Confalonieri R.	Quantifying Uncertainty Due to Stochastic Weather Generators in Climate Change Impact Studies.	Sci Rep	9(1)	9258	2019		
46937	31163394	Li W., Chern M., Yin J., Wang J., Chen X.	Recent advances in broad-spectrum resistance to the rice blast disease.	Curr. Opin. Plant Biol.	50	114-120	2019		
46938	31293292	Balwinder-Singh, McDonald A.J., Kumar V., Poonia S.P., Srivastava A.K., Malik R.K.	Taking the climate risk out of transplanted and direct seeded rice: Insights from dynamic simulation in Eastern India.	Field Crops Res.	239	92-103	2019		
46939	31200078	Li Z., Liang Y., Yuan Y., Wang L., Meng X., Xiong G., Zhou J., Cai Y., Han N., Hua L., Liu G., Li J., Wang Y.	OsBRXL4 Regulates Shoot Gravitropism and Rice tiller angle through Affecting LAZY1 Nuclear Localization.	Mol Plant	12(8)	1143-1156	2019		
46940	31179846	Yang J., Tian R., Gao Z., Yang H.	Characterization of <i>AtWRI1</i> in fatty acids and starch synthesis in rice.	Biosci. Biotechnol. Biochem.	83(10)	1807-1814	2019		
46941	31180162	Suzuki A., Aikawa Y., Ito R., Hoshino T.	Oryza sativa parkeol cyclase. Changes in the substrate folding conformation and the deprotonation sites by mutations at Tyr257: Importance of the hydroxyl group and steric bulk.	Chembiochem			2019		
46942	31268431	Oddone E., Taino G., Vita S., Schimd M., Frigerio F., Imbriani M.	Macular degeneration: peculiar sunlight exposure in an agricultural worker.	Med Lav	110(3)	241-245	2019		
46943	31307132	Larmande P., Do H., Wang Y.	OryzaGP: rice gene and protein dataset for named-entity recognition.	Genomics Inform	17(2)	e17	2019		
46944	31234788	Ojha A., Zhang W.	A comparative study of microbial community and dynamics of Asaia in the brown planthopper from susceptible and resistant rice varieties.	BMC Microbiol.	19(1)	139	2019		
46945	31182016	Subedi S.R., Sandhu N., Singh V.K., Sinha P., Kumar S., Singh S.P., Ghimire S.K., Pandey M., Yadaw R.B., Varshney R.K., Kumar A.	Genome-wide association study reveals significant genomic regions for improving yield, adaptability of rice under dry direct seeded cultivation condition.	BMC Genomics	20(1)	471	2019		
46946	31242613	Rana M.M., Aycan M., Takamatsu T., Kaneko K., Mitsui T., Itoh K.	Optimized Nuclear Pellet Method for Extracting Next-Generation Sequencing Quality Genomic DNA from Fresh Leaf Tissue.	Methods Protoc	2(2)		2019		
46947	31159452	Peng C., Tong H., Yuan P., Sun L., Jiang L., Shi J.	Aggregation, Sedimentation, and Dissolution of Copper Oxide Nanoparticles: Influence of Low-Molecular-Weight Organic Acids from Root Exudates.	Nanomaterials (Basel)	9(6)		2019		
46948	31214893	Yu J., Zhang D.	Molecular Control of Redox Homoeostasis in Specifying the Cell Identity of Tapetal and Microsporocyte Cells in Rice.	Rice (N Y)	12(1)	42	2019		
46949	31171826	Arikit S., Wanchana S., Khanthong S., Saensuk C., Thianthavon T., Vanavichit A., Toojinda T.	QTL-seq identifies cooked grain elongation QTLs near soluble starch synthase and starch branching enzymes in rice (Oryza sativa L.).	Sci Rep	9(1)	8328	2019		
46950	31204227	Tao H., Tian H., Jiang S., Xiang X., Ahmed W., Tang R., Cui Z.N.	Synthesis and bioactivity of 1,3-thiazolidine-2-thione derivatives against type III secretion system of Xanthomonas oryzae.	Bioorg. Med. Chem.	27(15)	3364-3371	2019		
46951	31284138	Banerjee A., Roychoudhury A., Ghosh P.	Differential fluoride uptake induces variable physiological damage in a non-aromatic and an aromatic indica rice cultivar.	Plant Physiol. Biochem.	142	143-150	2019		
46952	31185911	Cao Z.Z., Lin X.Y., Yang Y.J., Guan M.Y., Xu P., Chen M.X.	Gene identification and transcriptome analysis of low cadmium accumulation rice mutant (lcd1) in response to cadmium stress using MutMap and RNA-seq.	BMC Plant Biol.	19(1)	250	2019	LCD1,_,PDR9,GCC7,NRAMP1	NRAMP5, OsNRAMP5, OsNramp5, OsLCD1,OsZIP9, ZIP9,OsPDR9, ospdr9, OsPDR3, PDR3, OsABCG36/OsPDR9, OsABCG36,HMA3, OsHMA3, OsHMA3a, OsHMA3n, osHMA3, OsHMP34, HMP34,OsNramp1, OsNRAMP1, OsNramp6
46953	31181338	Zhang C., Zhu J., Chen S., Fan X., Li Q., Lu Y., Wang M., Yu H., Yi C., Tang S., Gu M., Liu Q.	Wxlv, the Ancestral Allele of Rice Waxy Gene.	Mol Plant	12(8)	1157-1166	2019		
46954	31257443	Adachi S., Tanaka Y., Miyagi A., Kashima M., Tezuka A., Toya Y., Kobayashi S., Ohkubo S., Shimizu H., Kawai-Yamada M., Sage R.F., Nagano A.J., Yamori W.	High-yielding rice Takanari has superior photosynthetic response under fluctuating light to a commercial rice Koshihikari.	J. Exp. Bot.			2019		
46955	31175302	Xie Y., Tang J., Xie X., Li X., Huang J., Fei Y., Han J., Chen S., Tang H., Zhao X., Tao D., Xu P., Liu Y.G., Chen L.	An asymmetric allelic interaction drives allele transmission bias in interspecific rice hybrids.	Nat Commun	10(1)	2501	2019	S1,S1A4,TP1,S1A6	,,OsTP1, S1TP, OgTPR1, S1TPR,
46956	31279135	Nasir F., Tian L., Shi S., Chang C., Ma L., Gao Y., Tian C.	Strigolactones positively regulate defense against Magnaporthe oryzae in rice (Oryza sativa).	Plant Physiol. Biochem.	142	106-116	2019		
46957	31021015	Yang Z., Sun L., Zhang P., Zhang Y., Yu P., Liu L., Abbas A., Xiang X., Wu W., Zhan X., Cao L., Cheng S.	TDR INTERACTING PROTEIN 3, encoding a PHD-finger transcription factor, regulates Ubisch bodies and pollen wall formation in rice.	Plant J.	99(5)	844-861	2019	TDR,C6,CYP703A3,MSP1,EAT1,ABCG15,MS2,TIP3,CYP704B2,GAMYB,ABCG26	tdr, OsbHLH005, bHLH005, OsbHLH5, bhlh5, TDR1, OsTDR, OsTDR1, OsMYC5, MYC5,Osc6, Osg6B, OsG6B, OsLTPG25, OsLTPg25, OsLtpVII.1, Os C6,OsCYP703A3,Msp1, OsMSP1, OsTMS15, TMS15,OsEAT1, OsbHLH141, EAT1/DTD1, bHLH141, DTD1, DTD, DLN120, OsDLN120,OsABCG15, PDA, PDA1, OsABCG15/PDA1,OsMS2, OsDPW, DPW, DPW1, OsDPW1, OsFAR2, FAR2,OsTIP3, OsPHD12, PHD12,OsCYP704B2,OsGAMYB, GAM1, OsGAMyb, Os-MYBGA, Os GAMYB, OsMYBGA, MYBGA, Os2R_MYB15, 2R_MYB15 ,OsABCG26
46958	31217482	Manickavasagam M., Pavan G., Vasudevan V.	A comprehensive study of the hormetic influence of biosynthesized AgNPs on regenerating rice calli of indica cv. IR64.	Sci Rep	9(1)	8821	2019		
46959	31252110	Peng J., He Y., Zhao Z., Jiang J., Zhou F., Liu F., Shen T.	Fast visualization of distribution of chromium in rice leaves by re-heating dual-pulse laser-induced breakdown spectroscopy and chemometric methods.	Environ. Pollut.	252(Pt B)	1125-1132	2019		
46960	31234778	Zhang H., Zhou L., Xu H., Wang L., Liu H., Zhang C., Li Q., Gu M., Wang C., Liu Q., Zhu Y.	The qSAC3 locus from indica rice effectively increases amylose content under a variety of conditions.	BMC Plant Biol.	19(1)	275	2019		
46961	31160507	Chen X., Tian X., Xue L., Zhang X., Yang S., Traw M.B., Huang J.	CRISPR-Based Assessment of Gene Specialization in the Gibberellin Metabolic Pathway in Rice.	Plant Physiol.	180(4)	2091-2105	2019		
46962	31180041	Shivaprasad P.V.	New clues into the mechanisms of rice domestication.	J. Biosci.	44(2)		2019		
46963	31218413	Grossi-de-Sa M., Petitot A.S., Xavier D.A., S? MEL., Mezzalira I., Beneventi M.A., Martins N.F., Baimey H.K., Albuquerque E.V.S., Grossi-de-Sa MF., Fernandez D.	Rice susceptibility to root-knot nematodes is enhanced by the Meloidogyne incognita MSP18 effector gene.	Planta	250(4)	1215-1227	2019		
46964	31186483	Du L., Chen G., Han L., Peng Y.	Cadherin CsCad plays differential functional roles in Cry1Ab and Cry1C intoxication in Chilo suppressalis.	Sci Rep	9(1)	8507	2019		
46965	31207122	Peng T., Teotia S., Tang G., Zhao Q.	MicroRNAs meet with quantitative trait loci: Small powerful players in regulating quantitative yield traits in rice.	Wiley Interdiscip Rev RNA		e1556	2019		
46966	31247396	Herath V.	The architecture of the GhD7 promoter reveals the roles of GhD7 in growth, development and the abiotic stress response in rice.	Comput Biol Chem	82	1-8	2019		
46967	31187662	Tang Z., Xu M., Ito H., Cai J., Ma X., Qin J., Yu D., Meng Y.	Deciphering the non-coding RNA-level response to arsenic stress in rice (<i>Oryza sativa</i>).	Plant Signal Behav	14(9)	1629268	2019		
46968	31254024	Kuzay S., Xu Y., Zhang J., Katz A., Pearce S., Su Z., Fraser M., Anderson J.A., Brown-Guedira G., DeWitt N., Peters Haugrud A., Faris J.D., Akhunov E., Bai G., Dubcovsky J.	Identification of a candidate gene for a QTL for spikelet number per spike on wheat chromosome arm 7AL by high-resolution genetic mapping.	Theor. Appl. Genet.	132(9)	2689-2705	2019		
46969	31213660	Awasthi J.P., Saha B., Panigrahi J., Yanase E., Koyama H., Panda S.K.	Redox balance, metabolic fingerprint and physiological characterization in contrasting North East Indian rice for Aluminum stress tolerance.	Sci Rep	9(1)	8681	2019		
46970	31108003	Yamaji N., Ma J.F.	Bioimaging of multiple elements by high-resolution LA-ICP-MS reveals altered distribution of mineral elements in the nodes of rice mutants.	Plant J.	99(6)	1254-1263	2019		
46971	31247444	Suekawa M., Fujikawa Y., Esaka M.	Exogenous proline has favorable effects on growth and browning suppression in rice but not in tobacco.	Plant Physiol. Biochem.	142	1-7	2019		
46972	31208337	Zhang P., Zhong K., Zhong Z., Tong H.	Genome-wide association study of important agronomic traits within a core collection of rice (Oryza sativa L.).	BMC Plant Biol.	19(1)	259	2019		
46973	31159731	Pan Q., Wei J., Guo F., Huang S., Gong Y., Liu H., Liu J., Li L.	Trait ontology analysis based on association mapping studies bridges the gap between crop genomics and Phenomics.	BMC Genomics	20(1)	443	2019		
46974	31238548	Mohd Ikmal A., Nurasyikin Z., Tuan Nur Aqlili Riana TA., Puteri Dinie Ellina Z., Wickneswari R., Noraziyah A.A.S.	Drought Yield QTL (<i>qDTY</i>) with Consistent Effects on Morphological and Agronomical Traits of Two Populations of New Rice (<i>Oryza sativa</i>) Lines.	Plants (Basel)	8(6)		2019		
46975	31236783	Tariq R., Ji Z., Wang C., Tang Y., Zou L., Sun H., Chen G., Zhao K.	RNA-Seq analysis of gene expression changes triggered by Xanthomonas oryzae pv. oryzae in a susceptible rice genotype.	Rice (N Y)	12(1)	44	2019		
46976	31204700	Bhat R., Singh A.K., Salgotra R.K., Sharma M., Mushtaq M., Bagati S., Hangloo S., Singh A.	Detection of QTL for panicle architecture in F2 population of rice.	J. Genet.	98(2)		2019		
46977	31185908	Feng X., Lin K., Zhang W., Nan J., Zhang X., Wang C., Wang R., Jiang G., Yuan Q., Lin S.	Improving the blast resistance of the elite rice variety Kongyu-131 by updating the Pi21 locus.	BMC Plant Biol.	19(1)	249	2019		
46978	31189967	Wang X., Liu H., Yu F., Hu B., Jia Y., Sha H., Zhao H.	Differential activity of the antioxidant defence system and alterations in the accumulation of osmolyte and reactive oxygen species under drought stress and recovery in rice (Oryza sativa L.) tillering.	Sci Rep	9(1)	8543	2019		
46979	31068452	Wang B., Li J.	Understanding the Molecular Bases of Agronomic Trait Improvement in Rice.	Plant Cell	31(7)	1416-1417	2019	RF1,D27,SLR1,SE1,BC1,SD1,ATP6	Rf1 (Rf-1), rf-1, PPR791, PPR8-1, Rf-1, Rf1, Rf-1A, Rf5, Rf1a, RF5, Rf5(t)*(Rf(t)*), RF1A, PPR6, PLS31, OsPLS31,d27(d t), dt, dwf23, d27, OsD27,slr1-1, slr1, slr, GAI, OsGAI, OsSLR1, Os SLR1, OsRGA1, OsGRAS-18, OsGRAS-18, GRAS-18, GRAS18, SLR-1,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, OsHd1,  Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,bc1, bc-1, OsBC1, CWA1, FP1, OsPCS3, PCS3,sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2, OsPHQ1, OsPHq1, PHq1,atp6, OsPOX1, prx3, POX1
46980	31068462	Dickinson A.J., Lehner K., Mi J., Jia K.P., Mijar M., Dinneny J., Al-Babili S., Benfey P.N.	beta-Cyclocitral is a conserved root growth regulator.	Proc. Natl. Acad. Sci. U.S.A.	116(21)	10563-10567	2019		
46981	31109052	Chen X., Tao Y., Ali A., Zhuang Z., Guo D., Guo Q., Riaz A., Zhang H., Xu P., Liao Y., Wang J., Sun C., Xiang Q., Wu X.	Transcriptome and Proteome Profiling of Different Colored Rice Reveals Physiological Dynamics Involved in the Flavonoid Pathway.	Int J Mol Sci	20(10)		2019	F3'H,CHI3,_,_,F3'H2,_,_,NCED1,ANS,_,YGDL1,UGT707A5,RNS3,F3'H4,UGT75H1,_,_,CYP71C8,_,_,CYP75A11,UGT703A2,CYP92A9,CHS,_,F3H2,4CL2,UGT83A1,_,PGI2,UGT84C1,2ODD10,_,CHI6,UGT75K1	OsF3'H, OsCYP75B3, CYP75B3, OsF3'H10, F3'H10, OsCYP71P3, CYP71P3,gh1, GH1, OsGH1, OsCHI, Cfi, CHI, OsCHI3,,,OsF3'H2, OsCYP71W1, CYP71W1,,ROMT-16, ROMT16, COA1, CCoAOMT-1, OsROMT-16, OsROMT16, OsCOA1, OsCCoAOMT-1,OsNCED1, OsCCD4a, CCD4a,ANS, OsANS1, ANS1, LDOX, LDOX1, OsLDOX, OsLDOX1,,OsAld-Y, Ald-Y, YGDL-1 ,OsUGT707A5,OsRNS3, OsRNasePD2, RNasePD2,OsF3'H4, OsCYP71U11, CYP71U11,OsUGT75H1,,OsCGT, CGT,OsCYP71C8,,,OsCYP75A11, OsF3'5'H, F3'5'H, OsF3'5'H1, F3'5'H1,OsUGT703A2,OsCYP92A9, OsCYP71W6, CYP71W6,CHS*, Oschs, chs, chas, OsCHS, OsCHS1, CHS1, OsPKS26, PKS26, OsCHS24, CHS24, OsCHS27, CHS27,,OsF3H-2, F3H-2, OsF3H2, FNS1, OsFNS1, OsSAH4, SAH4, OsF3H8, F3H8,Os4CL2,OsUGT83A1,,Pgi2(Pgib), Pgib, Pgi_2, Pgi2, GPI-B, PGI-B, PHI-B, Pgi-b, PGI-b, SIS, OsSIS, OsPGI2,OsUGT84C1,2-ODD10, Os2-ODD10, Os2ODD10, OsF3H6, F3H6,,CHI, OsCHI6, OsCHIL1, CHIL1,OsUGT75K1
46982	31119363	Feng H., Tang Q., Cai J., Xu B., Xu G., Yu L.	Rice OsHAK16 functions in potassium uptake and translocation in shoot, maintaining potassium homeostasis and salt tolerance.	Planta	250(2)	549-561	2019	HAK16	OsHAK16
46983	30929297	Park H.C., Hwang J.E., Jiang Y., Kim Y.J., Kim S.H., Nguyen X.C., Kim C.Y., Chung W.S.	Functional characterisation of two phytochelatin synthases in rice (Oryza sativa cv. Milyang 117) that respond to cadmium stress.	Plant Biol (Stuttg)	21(5)	854-861	2019	PCS5,PCS1	OsPCS, PCS, OsPCS2, PCS2, OsPCS2a, PCS2a, OsPCS2b, PCS2b, OsPCS1, PCS1, OsPCS1a, OsPCS1b, OsPCS1c, OsPCS1full, OsPCS5,OsPCS1, OsPCS2, PCS2, OsPCS15, PCS15
46984	31062267	Kurt F., Filiz E., Kurt B.	A key gene bHLH115 in iron homeostasis: comprehensive bioinformatics analyses in Arabidopsis, tomato, rice, and maize.	Biometals	32(4)	641-656	2019	BHLH60	OsbHLH060, bHLH060, bHLH60, OsPRI1, PRI1, OsbHLH115, bHLH115
46985	31078272	Zhou X., Ni L., Liu Y., Jiang M.	Phosphorylation of bip130 by OsMPK1 regulates abscisic acid-induced antioxidant defense in rice.	Biochem. Biophys. Res. Commun.	514(3)	750-755	2019		
46986	31146805	Lin Z., Yan J., Su J., LIU H., Hu C., Li G., Wang F., Lin Y.	Novel OsGRAS19 mutant, D26, positively regulates grain shape in rice (Oryza sativa).	Funct. Plant Biol.			2019		
46987	30920691	Min H.J., Cui L.H., Oh T.R., Kim J.H., Kim T.W., Kim W.T.	OsBZR1 turnover mediated by OsSK22-regulated U-box E3 ligase OsPUB24 in rice BR response.	Plant J.	99(3)	426-438	2019	PUB24,BIN2,BZR1	OsPUB24,GSK2, Os GSK2, OsGSK2, Os BIN2, OsBIN2, BIN2/GSK2, OsSK22/OsGSK7, OsSK22, OsGSK7, SK22, GSK7, OsSK22/GSK2 ,OsBZR1, Os BZR1, OsBES1-6, BES1-6
46988	31130602	Guo T., Wang D., Fang J., Zhao J., Yuan S., Xiao L., Li X.	Mutations in the Rice <i>OsCHR4</i> Gene, Encoding a CHD3 Family Chromatin Remodeler, Induce Narrow and Rolled Leaves with Increased Cuticular Wax.	Int J Mol Sci	20(10)		2019	HMS1,ROC4,CHR705,LACS2,YUCCA5,LTR1,DLN32,PKL,BDG,_,RFS,YUCCA2,YUCCA3,LACS7,YUCCA6,CER7,DLN39	CER6/CUT1, CER6, CUT1, OsCER6, WSL4, KCS6, OsKCS6, CER6/CUT1/KCS6, OsHMS1, OsKCS8, KCS8,Roc4(t), Roc4, GL2-4, OsROC4, OsGL2-4, OsHDZ16, OsHDZIP16, HDZ16, HDZIP16,chr705, OsCHR705,OsLACS2, OsLACS6, LACS6,OsYUCCA5, OsYUC5, YUC5,OsCER1, CER1, OsGL1-4, GL1-4, Os CER1, OsLTR1,CHR703, OsDLN32, OsCHR703,CHR702, chr702, OsCHR702,OsBDG,CHR723, OsCHR723,rfs, cul7, OsRFS, OsCHR729, CHR729, CHR4, OsCHR4, CRL6, OsCRL, OsCHR4/CHR729, PKR1, OsPHD32, PHD32,OsYUCCA2, OsYUC2, YUC2,OsYUCCA3, OsYUC3, YUC3,OsLACS7,OsYUCCA6, OsYUC6, YUC6,OsCER7,CHR744, OsCHR744, OsDLN39
46989	31086007	Liu D., Shi S., Hao Z., Xiong W., Luo M.	OsbZIP81, A Homologue of Arabidopsis VIP1, May Positively Regulate JA Levels by Directly Targetting the Genes in JA Signaling and Metabolism Pathway in Rice.	Int J Mol Sci	20(9)		2019	AOC,PR10A,_,LOX1,RSG,RSOSPR10,PIOX,BZIP81	OsAOC, AOC1, OsAOC1, HB, CPM2, OsAOC4, AOC4,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,Lox2:Os:1, OsLOX9, LOX9, OsLOX8, LOX8, OsLOX2, LOX2, OsRLL, OsHI-LOX, HI-LOX, RLL2 LOX, RLL2, Lox2osPil, OsLOX2;1, LOX2;1, OsLOX1, OsLOX7, LOX7,OsLOX1, OsLOX5, OsLOX2, LOX2,OsbZIP84, BZIP84,RSOsPR10, RsOsPR10a, OsPR10a, OsPR10alpha, OsPR10, PR10, OsBETV1, BETV1,OsPIOX, RalphaO, alpha-DOX, OsDOX, DOX, alpha-DOX2, Osalpha-DOX2,OsbZIP81, OsbZIP81.1, OsbZIP81.2
46990	31111205	Li Y.L., Zhang Y.F., Li D.D., Shi Q.S., Lou Y., Yang Z.N., Zhu J.	Acyl-CoA synthetases from Physcomitrella, rice and Arabidopsis: different substrate preferences but common regulation by MS188 in sporopollenin synthesis.	Planta	250(2)	535-548	2019	ACS9	OsACS9, 4CL4, OsACOS12, ACOS12 
46991	31125390	Kang Z., Qin T., Zhao Z.	Overexpression of the zinc finger protein gene OsZFP350 improves root development by increasing resistance to abiotic stress in rice.	Acta Biochim. Pol.	66(2)	183-190	2019	LEA3-1,DREB2A,ZFP350,DREB1A	OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3, OsLEA3A, LEA3A,OsDREB2A, OsDREB2a, ERF40, OsERF#040, OsERF040, OsERF40, AP2/EREBP#167, AP2/EREBP167,OsZFP350,OsDREB1A, Os DREB1A, CBF3, OsCBF3, OsDREB1A/OsCBF3, ERF24, OsERF24, OsERF024, OsERF#024, AP2/EREBP#114, AP2/EREBP114, OsDREBL
46992	30900785	G?rska AM., Gouveia P., Borba A.R., Zimmermann A., Serra T.S., Louren?o TF., Margarida Oliveira M., Peterh?nsel C., Saibo N.J.M.	ZmbHLH80 and ZmbHLH90 transcription factors act antagonistically and contribute to regulate PEPC1 cell-specific gene expression in maize.	Plant J.	99(2)	270-285	2019		
46993	31150378	Ma X., Feng F., Zhang Y., Elesawi I.E., Xu K., Li T., Mei H., Liu H., Gao N., Chen C., Luo L., Yu S.	A novel rice grain size.gene OsSNB was identified by genome-wide association study in natural population.	PLoS Genet.	15(5)	e1008191	2019	SNB,WAK11,GS5,TGW6	AP2/EREBP#073, AP2/EREBP73, AP2-3, OsAP2-3, SSH1, OsSSH1, OsSNB, DLN181, DLN181a, DLN181b, OsDLN181, OsDLN181a, OsDLN181b, SUI4, OsSUI4, SUI4/SNB,OsWAK11,OsSCP26, SCP26, OsGS5,tgw6, OsSTRL7, STRL7, OsSSL4, SSL4
46994	31147794	Yang X., Wang J., Dai Z., Zhao X., Miao X., Shi Z.	miR156f integrates panicle architecture through genetic modulation of branch number and pedicel length pathways.	Rice (N Y)	12(1)	40	2019	MIR156F,SPL7,RCN2,LAX1,GN1A,IDS1,RCN3,GLW7 ,MOC1,RCN4,RA2,MFS1,LAX2,HD5,RCN1	miR156f, osmiR156f, OsmiR156f, osa-miR156f, osa-MIR156fosa-miR156f-3p osa-miR156f-5p,OsSPL7,Rcn2, OsRCN2,lax, lax(lx), lx, OsbHLH123, bHLH123, OsLAX1, BOS1, OsBOS1,Gn1a, OsCKX2, CKX2, ckx2, Gn1a/OsCKX2, Os CKX2, CKX2/Gn1a,OsIDS1, AP2/EREBP#033, AP2/EREBP33, AP2-33/IDS1, AP2-33, AP2-2, DLN104, OsDLN104,Rcn3, OsRCN3, RCN3/FDR1, FDR1, Fdr1, OsFDR1,OsSPL13, SPL13, OsGLW7,moc1, OsMOC1, OsGRAS-33, OsGRAS33, GRAS-33, GRAS33, GNP6, OsGNP6,Rcn4, OsRCN4,ra2, Osra2, OsCrll4, CRL1L4, CRLL4, OsRA2,ERF130, OsERF#130, OsERF130, AP2/EREBP#165, AP2/EREBP165, DLN151, OsDLN151,OsLAX2, Gnp4/LAX2, Gnp4,Hd5(t)*, Hd5, qHD5, HAP3H, OsHAP3H, NF-YB, CBF-A, DTH8 , qHD5(t)*, Ghd8, Ghd8/DTH8, Lhd1, NF-YB11, OsNF-YB11, NFYB11, LH8, DTH8/Ghd8, RH8, DTH8/Ghd8/LHD1, CAR8, DTH8/Ghd8/ OsHAP3H, EF8, OsEF8,Rcn1, FDR2, Fdr2, RCN1/FDR2, OsRCN1
46995	30783673	Cheng X., Zhao Y., Jiang Q., Yang J., Zhao W., Taylor I.A., Peng Y.L., Wang D., Liu J.	Structural basis of dimerization and dual W-box DNA recognition by rice WRKY domain.	Nucleic Acids Res.	47(8)	4308-4318	2019	WRKY45	OsWRKY45, OsWRKY45-1, OsWRKY45-2, WRKY45-1, WRKY45-2
46996	31046677	Zheng X., Jehanzeb M., Habiba, Zhang Y., Li L., Miao Y.	Characterization of S40-like proteins and their roles in response to environmental cues and leaf senescence in rice.	BMC Plant Biol.	19(1)	174	2019	S40-3,S40-4,S40-6,S40-14,S40-5,S40-2,S40-8,S40-9,S40-11,S40-10,S40-12,S40-15,S40-13,S40-1 ,S40-16,S40-7	OsS40-3,OsS40-4,OsS40-6,OsS40-14,OsS40-5,OsS40-2,OsS40-8,OsS40-9,OsS40-11,OsS40-10,OsS40-12,OsS40-15,OsS40-13,Dfu584, Duf584, OsS40-1,OsS40-16,OsS40-7
46997	31076936	Chen L., Yuan Y., Wu J., Chen Z., Wang L., Shahid M.Q., Liu X.	Carbohydrate metabolism and fertility related genes high expression levels promote heterosis in autotetraploid rice harboring double neutral genes.	Rice (N Y)	12(1)	34	2019	DFR2 ,SB,SMS2,RSUS3,BT1-1,SUT1,CYP703A3,RSUS4,SA,HXK6,ACS9,MS2,SBE3,MSP1,ABCG15,FLO5,CDKG1	OsTKPR1, TKPR1, OsDFR2, OS-DFR2, OsDFR2A, DFR2A, OsCCRL1, CCRL1,Sb*, S-b, Hst17, S24, F5-Du,INV3, OSINV3, OsINV3, OsVIN2, VIN2, VINV, OsSMS2,RSus3(t), SUS3, SS3, OsScS3, RSs3, RSus3, OsSUS3, RSS3, OsEnS-111, Susy3, OsSusy3,OsBT1-1, OsEnS-29, OsBT1, OsBt1, BT1, Bt1, OsBt1-1, shr3, OsBT1-2, BT1-2,OsSUT1, OsSUT2,OsCYP703A3,SUS4, SS4, OsScS4, RSs4, RSus4, OsSUS4,Sa*, S-a, Hst16,OsHXK6,OsACS9, 4CL4, OsACOS12, ACOS12 ,OsMS2, OsDPW, DPW, DPW1, OsDPW1, OsFAR2, FAR2,SBEIII*, SBEIII, Sbe3, RBE3, QEIIa, QEIIA, BEIIb, BEIIB, SBEIIb, OsBEIIb, sbe3, SBE III, OsSBEIIb, SBEIIb,Msp1, OsMSP1, OsTMS15, TMS15,OsABCG15, PDA, PDA1, OsABCG15/PDA1,OsSSIIIa, SSIII-2, OsSSIII-2, OsSS3A, SS3A, SS3a, OsSSSIIIa, SSIIIa, Flo5,OsCDKG1
46998	31096659	Kong W., Gong Z., Zhong H., Zhang Y., Zhao G., Gautam M., Deng X., Liu C., Zhang C., Li Y.	Expansion and Evolutionary Patterns of Glycosyltransferase Family 8 in Gramineae Crop Genomes and Their Expression under Salt and Cold Stresses in <i>Oryza sativa</i> ssp. <i>japonica</i>.	Biomolecules	9(5)		2019	PDT1,GGT,PGSIP-B1,GAUT18,GAUT22,PGSIP-A1,PGSIP-C2,WSI76,GATL2,GAUT9,GAUT14,GAUT13,GATL4,GAUT15,GATL7,GATL5,GAUT5,_,GT8-40,PGSIP-A3,PGSIP-B2,PGSIP-A2,GAUT16,GAUT11,GATL3,GAUT1,GAUT19,GAUT3,IRX8L,GAUT17,GAUT21,GATL8,GAUT8,GAUT10,GAUT4,GAUT7,GATL1,GAUT12,GOLS1,GATL6	OsGAUT2, GAUT, OsPDT1,OsGGT, OsPGSIP-C1, PGSIP-C1,OsPGSIP-B1,OsGAUT18,OsGAUT22,OsPGSIP-A1, OsGUX1, GUX1, OsGUX1L,OsPGSIP-C2,wsi76, OsLEA24/OsGolS2, OsGolS2/OsLEA24, OsLEA24, OsGolS2, GolS2, LEA24, OsGolS1, GolS1, OsGOLS2, GOLS2,OsGATL2,OsGAUT9,OsGAUT14,OsGAUT13,OsSTA200, OsGATL4,OsGAUT15,OsGATL7,OsGATL5,OsGAUT5,OsGAUT4, GAUT4,OsGT8-40,OsPGSIP-A3,OsPGSIP-B2,OsPGSIP-A2,OsGAUT16,OsGAUT11,OsGATL3,OsGAUT1,OsGAUT19,OsGAUT3,OsGAUT20, GAUT20, OsIRX8L,OsGAUT17,OsGAUT21,OsGATL8,OsGAUT8,OsGAUT10,OsGAUT4, OsGAUT6, GAUT6,OsSTA216, OsGAUT7,OsGATL1,OsGAUT12,OsGolS1, GolS1, OsGolS2, GolS2,OsGATL6, OsGT8, GT8
46999	31134357	Min M.K., Choi E.H., Kim J.A., Yoon I.S., Han S., Lee Y., Lee S., Kim B.G.	Two Clade A Phosphatase 2Cs Expressed in Guard Cells Physically Interact With Abscisic Acid Signaling Components to Induce Stomatal Closure in Rice.	Rice (N Y)	12(1)	37	2019	PP2C50,SAPK10,PP2C53,SLAC1	OsPP2C50, OsPP78, OsABIL3, ABIL3,OsSAPK10, OsSnRK2.10, SnRK2.10,OsPP2C53, OsPP81, OsABIL2, ABIL2,OsSLAC1, OsSLAH1, SLAH1
47000	31081210	Guo T., Chen K., Dong N.Q., Ye W.W., Shan J.X., Lin H.X.	Tillering and small grain 1 dominates the tryptophan aminotransferase family required for local auxin biosynthesis in rice.	J Integr Plant Biol			2019	RAU1,EXPA10,ARF7,PIN1B,ARF1,BG1,TARL2,EXPA5,ARF2,MCM4,CYCB2;2,EXPB7,YUCCA1,ASA1,E2F2,EXPB3,CDC2-1,LRA1,CYCD1;1,TAR1,TARL1,FIB,CYCA3;2,TDD1,YUCCA7	OsLAX1, OsRAU1, OsAUX1, LAX1, AUX1,OsEXPA10, OsEXP10, osaEXPa1.28,OsARF7,PIN1A, OsPIN1A, OsPIN1a, REH1, OsPIN1, OsPIN1b, REH1/OsPIN1,OsARF1, arf1, OsARF23, ARF23,OsaBG1, OsBG1,OsTARL2,OsEXPA5, OsEXP5, osaEXPa1.20,OsARF2, OsARF4, ARF4,OsMCM4,cycB2;2 (=cycOs2), cycB2;2, cycOs2, CycB2;2, CycOs2, CYCB2-2, CYCOS2, CycB2-Os2, CYCB2, CycB2;os;2, OsCycB2;2, Orysa;CycB2;2, OsCYCOS2, Os;cycB2;2, CYCB2.2, OsCYCB2.2,OsEXPB7, osaEXPb1.12,OsYUCCA1, OsYUC1, YUC1,OASA1 (=ASA1), OsASA1, OASA1, OASA1(D323N), OASA1D,Orysa;E2F2, OsE2F2, DLN252, OsDLN252, OsE2Fa-2, E2Fa-2,OsEXPB3, osaEXPb1.10, EXPb1.10,cdc2Os-1, CDC2Os-1, CDKA-1, CDKA;1, Orysa;CDKA;1, OsCDKA;1, cdc2Os1, Rcdc2-1, OsCDKA1, CDKA1, CDC20S-1, OsCDC20S-1 ,OsPIN2, PIN2, OsLRA1, WAR1, OsWAR1,CycD1;1, CycD1;os;1, Orysa;CycD1;1, Orysa;CYCD1;1, OsCYCD2;1, CYCD2;1,OsTAR1, FBL,OsTAA1, TAA1, OsTAA1;4, TAA1;4, OsTARL1, OsTAA1;3, TAA1;3,fib, OsFIB, OsTAR2, TAR2, TSG1, OsTSG1, OsTAA1, TAA1,OsCYCA3;2, CycA3;2, CycA3;os;2, Orysa;CycA3;2, CYCA2.1, CYCA2;1,OsTDD1, ASB1, OASB1, OsASbeta1, ASbeta1, TDD1/OASB1,OsYUCCA7, OsYUC7, OsYUC5, YUC5, YUC7
47001	31072298	Yang J., Sun K., Li D., Luo L., Liu Y., Huang M., Yang G., Liu H., Wang H., Chen Z., Guo T.	Identification of stable QTLs and candidate genes involved in anaerobic germination tolerance in rice via high-density genetic mapping and RNA-Seq.	BMC Genomics	20(1)	355	2019		
47002	31400771	Tran B.Q., Tran L.H., Kim S.J., Jung S.	Altered regulation of porphyrin biosynthesis and protective responses to acifluorfen-induced photodynamic stress in transgenic rice expressing Bradyrhizobium japonicum Fe-chelatase.	Pestic Biochem Physiol	159	1-8	2019		
47003	30840768	Sui F., Zhao D., Zhu H., Gong Y., Tang Z., Huang X.Y., Zhang G., Zhao F.J.	Map-based cloning of a new total loss-of-function allele of OsHMA3 causes high cadmium accumulation in rice grain.	J. Exp. Bot.	70(10)	2857-2871	2019	ZIP8,GCC7	OsZIP8, OsZIP1, ZIP1, OsZIP13, ZIP13,HMA3, OsHMA3, OsHMA3a, OsHMA3n, osHMA3, OsHMP34, HMP34
47004	31203888	Li J., Yang J., Zhu B., Xie G.	Overexpressing OsFBN1 enhances plastoglobule formation, reduces grain-filling percent and jasmonate levels under heat stress in rice.	Plant Sci.	285	230-238	2019	FBN1	OsFBN1
47005	31072449	Piao W., Sakuraba Y., Paek N.C.	Transgenic expression of rice MYB102 (OsMYB102) delays leaf senescence and decreases abiotic stress tolerance in Arabidopsis thaliana.	BMB Rep			2019	MYB102	R2R3-MYB, OsMYB102, OsMYB81, MYB81
47006	30924949	Qin H., Wang J., Chen X., Wang F., Peng P., Zhou Y., Miao Y., Zhang Y., Gao Y., Qi Y., Zhou J., Huang R.	Rice OsDOF15 contributes to ethylene-inhibited primary root elongation under salt stress.	New Phytol.	223(2)	798-813	2019	SP3,ACS1,ACO3,ACO1,ACO2,ACS2	OsDof15, Dof15, OsDof-15, DOF15,ACC1*, OsACS1, Os-ACS1, ACC1, OsACC1,OsACO3, ACO2, OsACO2,OsACO1, ACO,OsACO2, OsACO1,OsACS2, Os-ACS2
47007	31113977	Esmaeili N., Yang X., Cai Y., Sun L., Zhu X., Shen G., Payton P., Fang W., Zhang H.	Co-overexpression of AVP1 and OsSIZ1 in Arabidopsis substantially enhances plant tolerance to drought, salt, and heat stresses.	Sci Rep	9(1)	7642	2019	SIZ1	OsSIZ1, OsSIZ1.1, OsSIZ1.2, OsSIZ1.3, DLN131, OsDLN131, OsPHD23, PHD23
47008	31075443	Chen K., Guo T., Li X.M., Zhang Y.M., Yang Y.B., Ye W.W., Dong N.Q., Shi C.L., Kan Y., Xiang Y.H., Zhang H., Li Y.C., Gao J.P., Huang X., Zhao Q., Han B., Shan J.X., Lin H.X.	Translational Regulation of Plant Response to High Temperature by a Dual-Function tRNAHis guanylyltransferase in Rice.	Mol Plant	12(8)	1123-1142	2019	ARF1,RACK1,ARF7A,EIF3H,AET1	OsARF1, arf1, OsARF23, ARF23,RACK1A, RWD, OsWD40-21, OsRACK1, OsRACK1A,OsARF7a, OsARF19, ARF19, OsARF7,eIF-3h, OseIF3h,OsAET1
47009	31148549	Dixit S., Singh U.M., Abbai R., Ram T., Singh V.K., Paul A., Virk P.S., Kumar A.	Identification of genomic region(s) responsible for high iron and zinc content in rice.	Sci Rep	9(1)	8136	2019		
47010	31043226	Morey S.R., Hirose T., Hashida Y., Miyao A., Hirochika H., Ohsugi R., Yamagishi J., Aoki N.	Characterisation of a rice vacuolar invertase isoform, OsINV2, for growth and yield-related traits.	Funct. Plant Biol.			2019		
47011	31154203	Fang Y., Deng X., Lu X., Zheng J., Jiang H., Rao Y., Zeng D., Hu J., Zhang X., Xue D.	Differential phosphoproteome study of the response to cadmium stress in rice.	Ecotoxicol. Environ. Saf.	180	780-788	2019		
47012	31141272	Leng Y., Gao Y., Chen L., Yang Y., Huang L., Dai L., Ren D., Xu Q., Zhang Y., Ponce K., Hu J., Shen L., Zhang G., Chen G., Dong G., Gao Z., Guo L., Ye G., Qian Q., Zhu L., Zeng D.	Using Heading date 1 preponderant alleles from indica cultivars to breed high-yield, high-quality japonica rice varieties for cultivation in south China.	Plant Biotechnol. J.			2019		
47013	31132695	Wu J., Shahid M.Q., Chen M., Li X., Li J., Xu X., Du S., Liu X.	Cytological and transcriptome analysis reveal that interaction at Sb pollen sterility locus cause down-regulation of important meiosis-related genes associated with high pollen sterility in autotetraploid rice hybrids.	Plant Physiol. Biochem.	141	73-82	2019		
47014	31096914	Li J., Wang Q., Li C., Bi Y., Fu X., Wang R.	Novel haplotypes and networks of AVR-Pik alleles in Magnaporthe oryzae.	BMC Plant Biol.	19(1)	204	2019		
47015	31148936	Ishihara A., Ando K., Yoshioka A., Murata K., Kokubo Y., Morimoto N., Ube N., Yabuta Y., Ueno M., Tebayashi S.I., Ueno K., Osaki-Oka K.	Induction of defense responses by extracts of spent mushroom substrates in rice.	Journal of Pesticide Science	44(2)	89-96	2019		
47016	31139953	Chu Y., Xu N., Wu Q., Yu B., Li X., Chen R., Huang J.	Rice transcription factor OsMADS57 regulates plant height by modulating gibberellin catabolism.	Rice (N Y)	12(1)	38	2019		
47017	31085810	Pasriga R., Yoon J., Cho L.H., An G.	Overexpression of <i>RICE FLOWERING LOCUS</i> T 1 (<i>RFT1</i>) Induces Extremely Early Flowering in Rice.	Mol. Cells	42(5)	406-417	2019		
47018	31159234	Zheng Y.Y., Liang Z.Y., Shen N.X., Liu W.L., Zhou X.J., Fu X.M., Chen M., Wang C.Y.	New Naphtho-gamma-Pyrones Isolated from Marine-Derived Fungus <i>Penicillium</i> sp. HK1-22 and Their Antimicrobial Activities.	Mar Drugs	17(6)		2019		
47019	31089902	Lee S.B., Kim N., Hur Y.J., Cho S.M., Kim T.H., Lee J.Y., Cho J.H., Lee J.H., Song Y.C., Seo Y.S., Ko J.M., Park D.S.	Fine mapping of qBK1, a major QTL for bakanae disease resistance in rice.	Rice (N Y)	12(1)	36	2019		
47020	31402824	Prakash V., Chakraborty S.	Identification of transcription factor binding sites on promoter of <i>RNA dependent RNA polymerases</i> (<i>RDRs</i>) and interacting partners of RDR proteins through in silico analysis.	Physiol Mol Biol Plants	25(4)	1055-1071	2019		
47021	31046902	Yu Y., Zhou Z., Pu H., Wang B., Zhang Y., Yang B., Zhao T., Xu D.	OsSIG2A is required for chloroplast development in rice (Oryza sativa L.) at low temperature by regulating plastid genes expression.	Funct. Plant Biol.			2019		
47022	31154202	Majumdar A., Upadhyay M.K., Kumar J.S., Sheena, Barla A., Srivastava S., Jaiswal M.K., Bose S.	Ultra-structure alteration via enhanced silicon uptake in arsenic stressed rice cultivars under intermittent irrigation practices in Bengal delta basin.	Ecotoxicol. Environ. Saf.	180	770-779	2019		
47023	31094073	Zang H., Xie S., Zhu B., Yang X., Gu C., Hu B., Gao T., Chen Y., Gao X.	Mannan oligosaccharides trigger multiple defence responses in rice and tobacco as a novel danger-associated molecular pattern.	Mol. Plant Pathol.	20(8)	1067-1079	2019		
47024	31223002	Chen Z., Guan H., Wang X., Dong R., Zhuo C., Mao D., Pan R., Zhou Y., Wu W.	[Pyramiding of 3-resistant-gene to improve rice blast resistance of a restorer line, Fuhui 673].	Sheng Wu Gong Cheng Xue Bao	35(5)	837-846	2019		
47025	30601714	Longya A., Chaipanya C., Franceschetti M., Maidment J.H.R., Banfield M.J., Jantasuriyarat C.	Gene Duplication and Mutation in the Emergence of a Novel Aggressive Allele of the <i>AVR-Pik</i> Effector in the Rice Blast Fungus.	Mol. Plant Microbe Interact.	32(6)	740-749	2019		
47026	31062101	Jiang H., Li Z., Liu J., Shen Z., Gao G., Zhang Q., He Y.	Development and evaluation of improved lines with broad-spectrum resistance to rice blast using nine resistance genes.	Rice (N Y)	12(1)	29	2019		
47027	31048729	Panigrahy M., Ranga A., Das J., Panigrahi K.C.S.	Shade tolerance in Swarnaprabha rice is associated with higher rate of panicle emergence and positively regulated by genes of ethylene and cytokinin pathway.	Sci Rep	9(1)	6817	2019		
47028	31404200	Barik J., Panda D., Mohanty S.K., Lenka S.K.	Leaf photosynthesis and antioxidant response in selected traditional rice landraces of Jeypore tract of Odisha, India to submergence.	Physiol Mol Biol Plants	25(4)	847-863	2019		
47029	31062105	Zhang Q., Zheng X.Y., Lin S.X., Gu C.Z., Li L., Li J.Y., Fang C.X., He H.B.	Transcriptome analysis reveals that barnyard grass exudates increase the allelopathic potential of allelopathic and non-allelopathic rice (Oryza sativa) accessions.	Rice (N Y)	12(1)	30	2019		
47030	31075379	Farhat S., Jain N., Singh N., Sreevathsa R., Dash P.K., Rai R., Yadav S., Kumar P., Sarkar A.K., Jain A., Singh N.K., Rai V.	CRISPR-Cas9 directed genome engineering for enhancing salt stress tolerance in rice.	Semin. Cell Dev. Biol.			2019		
47031	31094071	Liu Y., Li D., Yan J., Wang K., Luo H., Zhang W.	miR319 mediated salt tolerance by ethylene.	Plant Biotechnol. J.			2019		
47032	31067213	Liao C.C., Chen L.J., Lo S.F., Chen C.W., Chu Y.W.	EAT-Rice: A predictive model for flanking gene expression of T-DNA insertion activation-tagged rice mutants by machine learning approaches.	PLoS Comput. Biol.	15(5)	e1006942	2019		
47033	31093900	Shen Q., Pu Q., Liang J., Mao H., Liu J., Wang Q.	CYP71Z18 overexpression confers elevated blast resistance in transgenic rice.	Plant Mol. Biol.	100(6)	579-589	2019		
47034	31300135	Zulfugarov I.S., Wu G., Tovuu A., Lee C.H.	Effect of oxygen on the non-photochemical quenching of vascular plants and potential oxygen deficiency in the stroma of PsbS-knock-out rice.	Plant Sci.	286	1-6	2019		
47035	31129469	P?rez-D?az J., P?rez-D?az JR., Medeiros D.B., Zuther E., Hong C.Y., Nunes-Nesi A., Hincha D.K., Ruiz-Lara S., Casaretto J.A.	Transcriptome analysis reveals potential roles of a barley ASR gene that confers stress tolerance in transgenic rice.	J. Plant Physiol.	238	29-39	2019		
47036	30690625	Morita R., Crofts N., Shibatani N., Miura S., Hosaka Y., Oitome N.F., Ikeda K.I., Fujita N., Fukayama H.	CO2-Responsive CCT protein Stimulates the Ectopic Expression of Particular Starch Biosynthesis-Related Enzymes, Which Markedly Change the Structure of Starch in the Leaf Sheaths of Rice.	Plant Cell Physiol.	60(5)	961-972	2019		
47037	31090019	Vergara C., Araujo K.E.C., Sperandio M.V.L., Santos L.A., Urquiaga S., Zilli J?.	Dark septate endophytic fungi increase the activity of proton pumps, efficiency of 15N recovery from ammonium sulphate, N content, and micronutrient levels in rice plants.	Braz. J. Microbiol.	50(3)	825-838	2019		
47038	31481845	Nonoue Y., Hori K., Ono N., Shibaya T., Ogiso-Tanaka E., Mizobuchi R., Fukuoka S., Yano M.	Detection of heading date QTLs in advanced-backcross populations of an elite <i>indica</i> rice cultivar, IR64.	Breed. Sci.	69(2)	352-358	2019		
47039	31082580	Feng W., Guo Z., Xiao X., Peng C., Shi L., Ran H., Xu W.	Atmospheric deposition as a source of cadmium and lead to soil-rice system and associated risk assessment.	Ecotoxicol. Environ. Saf.	180	160-167	2019		
47040	31079034	Suzuki C., Tanaka W., Hirano H.Y.	Transcriptional Corepressor ASP1 and CLV-Like Signaling Regulate Meristem Maintenance in Rice.	Plant Physiol.	180(3)	1520-1534	2019	FON2,ASP1	fon2, OsFON2, FON4, OsFON4, FON2/FON4, TG1,OsLIS-L1, OsWD40-155, ASP1, TPR2, OsTPR2, OsREL2, REL2, OsTPL3, TPL3, OsTPL2, TPL2, ASP-LSL
47041	31046903	Neang S., de Ocampo M., Egdane J.A., Platten J.D., Ismail A.M., Skoulding N.S., Kano-Nakata M., Yamauchi A., Mitsuya S.	Fundamental parenchyma cells are involved in Na+ and Cl- removal ability in rice leaf sheath.	Funct. Plant Biol.			2019		
47042	31059826	Yao S., Yang Z., Yang R., Huang Y., Guo G., Kong X., Lan Y., Zhou T., Wang H., Wang W., Cao X., Wu J., Li Y.	Transcriptional Regulation of miR528 by OsSPL9 Orchestrates Antiviral Response in Rice.	Mol Plant	12(8)	1114-1122	2019		
47043	31140005	Xia Y., Tang N., Hu Y., Li D., Li S., Bu X., Yu M., Qi S., Yang Y., Zhu H., Cao C., Li P., Yuan L., Cao M.	A method for mechanized hybrid rice seed production using female sterile rice.	Rice (N Y)	12(1)	39	2019		
47044	31119561	Xie Y., Shen R., Chen L., Liu Y.G.	Molecular mechanisms of hybrid sterility in rice.	Sci China Life Sci	62(6)	737-743	2019		
47045	31218058	Lotfy V.F., Basta A.H.	Electiveness of agro-pulping process in the sustainable production of black liquor-based activated carbons.	R Soc Open Sci	6(5)	190173	2019		
47046	31131526	Chen C., He B., Liu X., Ma X., Liu Y., Yao H.Y., Zhang P., Yin J., Wei X., Koh H.J., Yang C., Xue H.W., Fang Z., Qiao Y.	Pyrophosphate-fructose 6-phosphate 1-phosphotransferase (PFP1) regulates starch biosynthesis and seed development via heterotetramer formation in rice (Oryza sativa L.).	Plant Biotechnol. J.			2019	PFPA2,SSIVB,AGPL1,SBE3,ISA2,PFPA4,WX1,SBE4,AGPL2,SSI,SSIIB,ALK,FLO5,PFPA1,ISA3,PFPB	OsPFPA2, OsPFP1a2, PFP1a2,OsSSIVb, SSIV-2, OsSSIV-2, SSIVb, SSIV-2, SSIV2, OsSSIV2,OsAGPL1, OsAPL1, APL1, OsAGPL3, AGPL3, OsAGPSL3, AGPSL3,SBEIII*, SBEIII, Sbe3, RBE3, QEIIa, QEIIA, BEIIb, BEIIB, SBEIIb, OsBEIIb, sbe3, SBE III, OsSBEIIb, SBEIIb,OsISA2, ISA II, OsISA II,OsPFPA4, OsPFP1a4, PFP1a4,wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx,RBE4, OsSBE4, BEIIa, QEIIb, BEIIA, OsBEIIa,OsAGPL2, osagpl2, APL2, OsAPL2, AGPiso, sh2, Sh2, GIF2, GAS1 ,OsSSI, SSS 1, SSS1, SS1, OsSS1, SSSI, OsSSSI,OsSSIIb, OsSSII-2, SSII-2, SS2, OsSSSIIb, SS2b,alk, SSII-3, OsSSIIa, OsSSII-3, SSIIa, SSS2A, OsSSIIaChr6, SS2a,OsSSIIIa, SSIII-2, OsSSIII-2, OsSS3A, SS3A, SS3a, OsSSSIIIa, SSIIIa, Flo5,OsPFPA1, OsPFP1a1, PFP1a1,OsISA3,OsPFPB, OsPFP-B, PFP-B, PFPbeta
47047	31203890	Rajakani R., Sellamuthu G., V S., S K., Shabala L., Meinke H., Chen Z., Zhou M., Parida A., Shabala S., Venkataraman G.	Microhair on the adaxial leaf surface of salt secreting halophytic Oryza coarctata Roxb. show distinct morphotypes: Isolation for molecular and functional analysis.	Plant Sci.	285	248-257	2019		
47048	31151078	Nada R.M., Abo-Hegazy SE., Budran E.G., Abogadallah G.M.	The interaction of genes controlling root traits is required for the developmental acquisition of deep and thick root traits and improving root architecture in response to low water or nitrogen content in rice (Oryza sativa L.) cultivars.	Plant Physiol. Biochem.	141	122-132	2019		
47049	31048747	Huang M., Tian A., Zhou X., Gao W., Li Z., Chen G., Li Z., Chen Y., Liu L., Yin X., Zou Y.	Yield performance of machine-transplanted double-season rice grown following oilseed rape.	Sci Rep	9(1)	6818	2019		
47050	30877079	Monteverde E., Gutierrez L., Blanco P., P?rez de Vida F., Rosas J.E., Bonnecarr?re V., Quero G., McCouch S.	Integrating Molecular Markers and Environmental Covariates To Interpret Genotype by Environment Interaction in Rice (<i>Oryza sativa</i> L.) Grown in Subtropical Areas.	G3 (Bethesda)	9(5)	1519-1531	2019		
47051	30840766	Cai H., Huang S., Che J., Yamaji N., Ma J.F.	The tonoplast-localized transporter OsHMA3 plays an important role in maintaining Zn homeostasis in rice.	J. Exp. Bot.	70(10)	2717-2725	2019		
47052	31073677	Xu X., Xu Z., Matsue Y., Xu Q.	Effects of Genetic Background and Environmental Conditions on Texture Properties in a Recombinant Inbred Population of an Inter-Subspecies Cross.	Rice (N Y)	12(1)	32	2019		
47053	30840760	Giuliani R., Karki S., Covshoff S., Lin H.C., Coe R.A., Koteyeva N.K., Quick W.P., Von Caemmerer S., Furbank R.T., Hibberd J.M., Edwards G.E., Cousins A.B.	Knockdown of glycine decarboxylase complex alters photorespiratory carbon isotope fractionation in Oryza sativa leaves.	J. Exp. Bot.	70(10)	2773-2786	2019		
47054	31126161	Gao W., Yu C., Ai L., Zhou Y., Duan L.	Gene Expression Profiles Deciphering the Pathways of Coronatine Alleviating Water Stress in Rice (<i>Oryza sativa</i> L.) Cultivar Nipponbare (Japonica).	Int J Mol Sci	20(10)		2019		
47055	31132519	Chen R., Yao Y., Fang H., Zhang E., Li P., Xu Y., Yin S., Huangfu L., Sun G., Xu C., Zhou Y., Yang Z.	Origin, evolution and functional characterization of the land plant glycoside hydrolase subfamily GH5_11.	Mol. Phylogenet. Evol.	138	205-218	2019		
47056	31076960	Zhang B., Shang L., Ruan B., Zhang A., Yang S., Jiang H., Liu C., Hong K., Lin H., Gao Z., Hu J., Zeng D., Guo L., Qian Q.	Development of Three Sets of High-Throughput Genotyped Rice Chromosome Segment Substitution Lines and QTL Mapping for Eleven Traits.	Rice (N Y)	12(1)	33	2019		
47057	31148460	Khatun M.R., Mukta R.H., Islam M.A., Huda AKMN.	Insight into citric acid-induced chromium detoxification in rice (<i>Oryza sativa</i>. L).	Int J Phytoremediation		1-7	2019		
47058	31404128	Nandy S., Pathak B., Zhao S., Srivastava V.	heat-shock-inducible CRISPR/Cas9 system generates heritable mutations in rice.	Plant Direct	3(5)	e00145	2019		
47059	31146232	Xu Y., Li K., Liu Y., Liu Z., Wang L., Pu J., Xu Z., Sun H.	Combined effects of artificial sweetener acesulfame on the uptake of Cd in rice (Oryza sativa L.).	Environ. Pollut.	252(Pt A)	171-179	2019		
47060	31159166	Song Q., Lv F., Tahir Ul Qamar M., Xing F., Zhou R., Li H., Chen L.L.	Identification and Analysis of Micro-Exon Genes in the Rice Genome.	Int J Mol Sci	20(11)		2019		
47061	31004552	Tao Y., Chen D., Zou T., Zeng J., Gao F., He Z., Zhou D., He Z., Yuan G., Liu M., Zhao H., Deng Q., Wang S., Zheng A., Zhu J., Liang Y., Wang L., Li P., Li S.	Defective Leptotene Chromosome 1 (DLC1) encodes a type-B response regulator and is required for rice meiosis.	Plant J.	99(3)	556-570	2019	AHP2,PHP1,PHP3,PHP2,AHP1,DLC1	OHP2, HPt, OsAHP2 Hpt3, Ohp2, OsHP1, HP1, OsHpt3, OsHP01,OsPHP1, Hpt1, OsHP3, sHP3, OsHpt1,OsPHP3, Hpt5, OsHP4, HP4, OsHpt5, OsHpt5a, OsHpt5b, OsHpt5c,OsPHP2, Hpt4, OsHP5, HP5, OsHpt4, OsHP05,OHP1, HPt, OsAHP1, Hpt2, Ohp1, OsHP2, HP2, OsHpt2, OsHPt2, OsHP02,RR24, OsRR24, Rrb2, Orr4, OsRR17, RR17, OsRRB2, OsRR24/LEPTO1, OsLEPTO1, LEPTO1, OsDLC1
47062	30894452	Koide Y., Sakaguchi S., Uchiyama T., Ota Y., Tezuka A., Nagano A.J., Ishiguro S., Takamure I., Kishima Y.	Genetic Properties Responsible for the Transgressive Segregation of Days to heading in Rice.	G3 (Bethesda)	9(5)	1655-1662	2019		
47063	31078592	Shumayla, Tyagi S., Sharma A., Singh K., Upadhyay S.K.	Genomic dissection and transcriptional profiling of Cysteine-rich receptor-like kinases in five cereals and functional characterization of TaCRK68-A.	Int. J. Biol. Macromol.	134	316-329	2019		
47064	31285004	Dias L.G., Duarte G.H.B., Mariutti L.R.B., Bragagnolo N.	Aroma profile of rice varieties by a novel SPME method able to maximize 2-acetyl-1-pyrroline and minimize hexanal extraction.	Food Res. Int.	123	550-558	2019		
47065	31055655	Le N.Q.K.	iN6-methylat (5-step): identifying DNA N6-methyladenine sites in rice genome using continuous bag of nucleobases via Chou's 5-step rule.	Mol. Genet. Genomics			2019		
47066	31094082	Deb S., Gupta M.K., Patel H.K., Sonti R.V.	Xanthomonas oryzae pv. oryzae XopQ protein suppresses rice immune responses through interaction with two 14-3-3 proteins but its phospho-null mutant induces rice immune responses and interacts with another 14-3-3 protein.	Mol. Plant Pathol.	20(7)	976-989	2019		
47067	31114741	Ngangkham U., Dash S., Parida M., Samantaray S., Nongthombam D., Yadav M.K., Kumar A., Chidambaranathan P., Katara J.L., Patra B.C., Bose L.K.	The potentiality of rice microsatellite markers in assessment of cross-species transferability and genetic diversity of rice and its wild relatives.	3 Biotech	9(6)	217	2019		
47068	31151227	Ming N.G.J., Binte Mostafiz S., Johon N.S., Abdullah Zulkifli NS., Wagiran A.	Combination of Plant Growth Regulators, Maltose, and Partial Desiccation Treatment Enhance Somatic Embryogenesis in Selected Malaysian Rice Cultivar.	Plants (Basel)	8(6)		2019		
47069	31137840	Kang D.Y., Cheon K.S., Oh J., Oh H., Kim S.L., Kim N., Lee E., Choi I., Baek J., Kim K.H., Chung N.J., Ji H.	Rice Genome Resequencing Reveals a Major Quantitative Trait Locus for Resistance to Bakanae Disease Caused by <i>Fusarium fujikuroi</i>.	Int J Mol Sci	20(10)		2019		
47070	31130712	Rana M.M., Takamatsu T., Baslam M., Kaneko K., Itoh K., Harada N., Sugiyama T., Ohnishi T., Kinoshita T., Takagi H., Mitsui T.	Salt Tolerance Improvement in Rice through Efficient SNP Marker-Assisted Selection Coupled with Speed-Breeding.	Int J Mol Sci	20(10)		2019		
47071	31083591	Xin W., Zhang L., Zhang W., Gao J., Yi J., Zhen X., Li Z., Zhao Y., Peng C., Zhao C.	An Integrated Analysis of the Rice Transcriptome and Metabolome Reveals Differential Regulation of Carbon and Nitrogen Metabolism in Response to Nitrogen Availability.	Int J Mol Sci	20(9)		2019		
47072	31087074	Melandri G., AbdElgawad H., Riewe D., Hageman J.A., Asard H., Beemster G.T.S., Kadam N., Jagadish K., Altmann T., Ruyter-Spira C., Bouwmeester H.	Biomarkers for grain yield stability in rice under drought stress.	J. Exp. Bot.			2019		
47073	31093479	Kalia S., Rathour R.	Current status on mapping of genes for resistance to leaf- and neck-blast disease in rice.	3 Biotech	9(6)	209	2019		
47074	31049745	Li H., Zheng X., Tao L., Yang Y., Gao L., Xiong J.	Aeration Increases Cadmium (Cd) Retention by Enhancing Iron Plaque Formation and Regulating Pectin Synthesis in the Roots of Rice (Oryza sativa) Seedlings.	Rice (N Y)	12(1)	28	2019		
47075	30940685	Shao Y., Zhou H.Z., Wu Y., Zhang H., Lin J., Jiang X., He Q., Zhu J., Li Y., Yu H., Mao C.	OsSPL3, an SBP-Domain Protein, Regulates crown root Development in Rice.	Plant Cell	31(6)	1257-1275	2019	IAA13,PIN5A,IAA9,IAA31,IAA11,ARF7A,ARF5,ARF16,IAA7,IAA23,LRA1,PIN5C,IAA5,MADS50,PIN10B,ARF22,ARF13,SPL12,CRL1,LCRN1,IAA4	OsIAA13, OsIAA1, OsiIAA1,OsPIN5a, OsPIN6,OsIAA9, OsIAA2,OsIAA3, IAA3, OsIAA31, OsIAA30, IAA30,OsIAA11,OsARF7a, OsARF19, ARF19, OsARF7,OsARF5,OsARF16, OsARF2, OsARF1,OsIAA7, DLN51, OsDLN51,OsIAA23,OsPIN2, PIN2, OsLRA1, WAR1, OsWAR1,PIN5B, OsPIN5b, OsPIN5c,OsIAA5,OsMADS50, AGL20, SOC1, OsSOC1, RMADS208, OsSOC1/ OsMADS50/DTH3, DTH3, OsDTH3,PIN3B, OsPIN3b, OsPIN10b,OsARF22,OsARF13, OsARF12, ARF12,OsSPL12, DLN176, OsDLN176,crl1, crl1*, ARL1, ARL1/CRL1, OsLBD3-2, LBD3-2, OsCRL1,OsSPL3, SPL3, OsLCRN1,OsIAA4, IAA20, OsIAA20
47076	31000651	Kempton H.R., Qi L.S.	When genome editing goes off-target.	Science	364(6437)	234-236	2019		
47077	31000601	Kim M.Y., Ono A., Scholten S., Kinoshita T., Zilberman D., Okamoto T., Fischer R.L.	DNA demethylation by ROS1a in rice vegetative cells promotes methylation in sperm.	Proc. Natl. Acad. Sci. U.S.A.	116(19)	9652-9657	2019	_,_,TA2,_,EMF2A,_	PEG1, OsPEG1,MEG2, OsMEG2,ROS1A, ROS1a, DME1, OsROS1A, OsROS1, ROS1, mOsROS1, ROS1A/DNG702, DNG702, OsDNG702,OsEnS-86, EnS-86, MEG3,OsEMF2a, OsEMF2, EMF2, ZOS4-02, OsZOS4-02,Os_F0794, OsFBDUF48, FBDUF48, PEG3,  OsFBDUF48, FBDUF48
47078	30948631	Luu D.D., Joe A., Chen Y., Parys K., Bahar O., Pruitt R., Chan L.J.G., Petzold C.J., Long K., Adamchak C., Stewart V., Belkhadir Y., Ronald P.C.	Biosynthesis and secretion of the microbial sulfated peptide RaxX and binding to the rice XA21 immune receptor.	Proc. Natl. Acad. Sci. U.S.A.	116(17)	8525-8534	2019		
47079	30937701	Shi L., Zhang X.B., Shi Y.F., Xu X., He Y., Shao G., Huang Q.N., Wu J.L.	OsCDC48/48E complex is required for plant survival in rice (Oryza sativa L.).	Plant Mol. Biol.	100(1-2)	163-179	2019	CDC2-1,MCM5,CYCB2;2,CYCA2;1,_,_,CDKF;1,_,_,PSD128,CYCT1;1,CDC48E,_,_,CYCA1;1,_	cdc2Os-1, CDC2Os-1, CDKA-1, CDKA;1, Orysa;CDKA;1, OsCDKA;1, cdc2Os1, Rcdc2-1, OsCDKA1, CDKA1, CDC20S-1, OsCDC20S-1 ,OsMCM5,cycB2;2 (=cycOs2), cycB2;2, cycOs2, CycB2;2, CycOs2, CYCB2-2, CYCOS2, CycB2-Os2, CYCB2, CycB2;os;2, OsCycB2;2, Orysa;CycB2;2, OsCYCOS2, Os;cycB2;2, CYCB2.2, OsCYCB2.2,CycA2;1, CycA2;os;1, Orysa;CycA2;1, OsCYCA2;1, CYCA2.2,,,CDKF;1, Orysa;CDKF;1, CDKF1, CDKF-1/CAK1AT, CDKF-1, CAK1AT, CAK1A,,,OsCDC48, CDC48, OsCDC48-1, CDC48-1,CycT1;1, CycT1;os;1, Orysa;CycT1;1, CYCT1,OsCDC48E, OsCDC48-2, CDC48-2,,,CycA1;1, CycA1;os;1, Orysa;CycA1;1, CYCA2.3, OscycA1;1, CYCA1-1, OsCYCA1-1,
47080	30931952	Dong Z., Li W., Liu J., Li L., Pan S., Liu S., Gao J., Liu L., Liu X., Wang G.L., Dai L.	The Rice Phosphate Transporter Protein OsPT8 Regulates disease resistance and Plant Growth.	Sci Rep	9(1)	5408	2019	WRKY53,DSG1,PR10A,RAC1,BWMK1,PAL1,SGT1,NH1,PT8	OsWRKY53, WRKY-53,OsMAPK6, MAPK6, OsMPK6, OsSIPK, SIPK, OsMAPK1, MAPK1, MPK1, OsMPK1, MPK6, OsDSG1,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsRAC1, OsRac1, Os Rac1, Rac1, Os-Rac1,OsBWMK1, MPK12, MAPK1, OsMAPK1, OsMPK12, OsMPK17-1, MPK17-1, OsBWMK1L, OsBWMK1M, OsBWMK1S, OsMAPK17-1, MAPK17-1, MAPK12, OsMAPK12,OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6,OsSgt1, OsSGT1, Os SGT1,OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2, DLN5, OsDLN5,  OsBTBA1, BTBA1,OsPT8, PHT1-8, OsPht1;8, Pht1;8, PHT1;8, OsPHT1;8
47081	31004187	Chang C.Y., Lee K.W., Wu C.S., Huang Y.H., Chang H.C., Chen C.L., Li C.T., Li M.J., Chang C.F., Chen P.W.	Identification of sugar response complex in the metallothionein OsMT2b gene promoter for enhancement of foreign protein production in transgenic rice.	Plant Cell Rep.	38(8)	899-914	2019	MT2B	OsMT2b, MT2b, OsMT-I-2c, MT-I-2c, MT2C, MT2BL, OsMT2C, OsMT2BL, MTE, OsMT2b1, OsMT2b2, MT2b1, MT2b2, MTb, met1, OsMTe, OsMT-I-2c, OsB22EL8, MTe, MT-I-2c, B22EL8
47082	30540528	Zhang H., He Y., Tan X., Xie K., Li L., Hong G., Li J., Cheng Y., Yan F., Chen J., Sun Z.	The Dual Effect of the Brassinosteroid Pathway on Rice Black-Streaked Dwarf Virus Infection by Modulating the Peroxidase-Mediated Oxidative Burst and Plant Defense.	Mol. Plant Microbe Interact.	32(6)	685-696	2019		
47083	30944383	Mohammed U., Caine R.S., Atkinson J.A., Harrison E.L., Wells D., Chater C.C., Gray J.E., Swarup R., Murchie E.H.	Rice plants overexpressing OsEPF1 show reduced stomatal density and increased root cortical aerenchyma formation.	Sci Rep	9(1)	5584	2019	STOMAGEN,EPF1	OsSTOMAGEN, OsEPFL9, EPFL9, OsEPFL10, EPFL10,OsEPF1, OsEPF2, EPF2
47084	30975460	Zhai K., Deng Y., Liang D., Tang J., Liu J., Yan B., Yin X., Lin H., Chen F., Yang D., Xie Z., Liu J.Y., Li Q., Zhang L., He Z.	RRM Transcription Factors Interact with NLRs and Regulate Broad-Spectrum Blast Resistance in Rice.	Mol. Cell	74(5)	996-1009.e7	2019	_,PIBP1,WAK14,PI9,_	PigmR,OsPIBP1,OsWAK14,Pi9(t), Pi9(t)*, Pi9, Pi-9(t),
47085	31001874	Zhao Z.X., Feng Q., Cao X.L., Zhu Y., Wang H., Chandran V., Fan J., Zhao J.Q., Pu M., Li Y., Wang W.M.	Osa-miR167d facilitates infection of Magnaporthe oryzae in rice.	J Integr Plant Biol			2019	ARF8,_,ARF6B,ARF17,_,MIR167D,GLR3.7	OsARF8, OsARF12, ARF12,,OsARF6b, OsARF25, ARF25,OsARF17,,miR167d, osa-miRNA167d, osa-miR167d, osa-miR167d-3p, osa-miR167d-5p,OsGLR3.7, OsGLR7.2, GLR7.2
47086	30999827	Kakegawa H., Shitan N., Kusano H., Ogita S., Yazaki K., Sugiyama A.	Uptake of adenine by purine permeases of <i>Coffea canephora</i>.	Biosci. Biotechnol. Biochem.	83(7)	1300-1305	2019		
47087	30970675	Naz M., Luo B., Guo X., Li B., Chen J., Fan X.	Overexpression of Nitrate Transporter <i>OsNRT2.1</i> Enhances Nitrate-Dependent Root Elongation.	Genes (Basel)	10(4)		2019	NRT2.1,PIN1B,PIN1A,PIN1C,LRA1	OsNRT2.1, OsNRT2.2,PIN1A, OsPIN1A, OsPIN1a, REH1, OsPIN1, OsPIN1b, REH1/OsPIN1,PIN1C, OsPIN1C, OsPIN1c, OsPIN1a,PIN1B, OsPIN1B, OsPIN1b, OsPIN1c,OsPIN2, PIN2, OsLRA1, WAR1, OsWAR1
47088	31028264	Yang Y., Guo M., Sun S., Zou Y., Yin S., Liu Y., Tang S., Gu M., Yang Z., Yan C.	Natural variation of OsGluA2 is involved in grain protein content regulation in rice.	Nat Commun	10(1)	1949	2019	GLUA2	Glua2*, Glua2, GLUA-2, GluA-2, Glu20, GluA2, OsEnS-137
47089	30941543	Han S., Lee Y., Park E.J., Min M.K., Lee Y., Kim T.H., Kim B.G., Lee S.	Structural determinants for pyrabactin recognition in ABA receptors in Oryza sativa.	Plant Mol. Biol.	100(3)	319-333	2019	PYL/RCAR5,PYL/RCAR8,PP2C50,PYL/RCAR6,PYL/RCAR10,PYL/RCAR9,PP2C6,PYL/RCAR4,PYL/RCAR3	OsPYL/RCAR5, PYL5, OsPYL5, OsPYL11, PYL11,OsPYL/RCAR8, PYL8, OsPYL8, OsPYL9, PYL9, CAPIP1,OsPP2C50, OsPP78, OsABIL3, ABIL3,OsPYL/RCAR6, PYL6, OsPYL6, OsPYL5, PYL5,OsPYL/RCAR10, PYL10, OsPYL10, OsPYL1, PYL1, R10, OsPYL/R10,OsPYL/RCAR9, PYL9, OsPYL9, OsPYL2, PYL2,OsPP2C06/OsABI2, OsPP2C06, OsPP2C6, OsABI2, OsPP10, ABI2, OsABIL1, ABIL1,OsPYL/RCAR4, PYL4, OsPYL4, OsPYL6, PYL6,OsPYL/RCAR3, PYL3, OsPYL3, OsPYL10, PYL10, OsRCAR1, RCAR1 
47090	30773774	Miyamoto T., Takada R., Tobimatsu Y., Takeda Y., Suzuki S., Yamamura M., Osakabe K., Osakabe Y., Sakamoto M., Umezawa T.	OsMYB108 loss-of-function enriches p-coumaroylated and tricin lignin units in rice cell walls.	Plant J.	98(6)	975-987	2019	PMT,DLN231,C4H2,CYP75B4,CHS,CYP93G1,GH2,ROMT9,CHI3	OsAT4, OsAt4, AT4, OsPMT, OsAT4/PMT, OsAT4/PMT1, OsAT4/OsPMT1, OsPMT1,R2R3-MYB, OsDLN231, OsMYB108, MYB108, OsMYB31, MYB31, Os2R_MYB86, Os2R_MYB86, 2R_MYB86 ,OsC4H, OsC4HL, C4H, OsC4H2,OsCYP75B4, OsC5'H, C5'H, OsF3'H9, F3'H9, OsCYP71P2, CYP71P2,CHS*, Oschs, chs, chas, OsCHS, OsCHS1, CHS1, OsPKS26, PKS26, OsCHS24, CHS24, OsCHS27, CHS27,OsCYP93G1, OsFNSII, FNSII, OsCYP71S4, CYP71S4,gh2, CAD2, CAD, OsCAD2, OsGH2 ,COMT, OsCOMT, ROMT-9, OsCOMT1, OsCAldOMT1, CAldOMT1, OsOMT, OsCOMT15, COMT15,gh1, GH1, OsGH1, OsCHI, Cfi, CHI, OsCHI3
47091	30801122	Rahman M.H., Toda E., Kobayashi M., Kudo T., Koshimizu S., Takahara M., Iwami M., Watanabe Y., Sekimoto H., Yano K., Okamoto T.	Expression of Genes from Paternal Alleles in Rice Zygotes and Involvement of OsASGR-BBML1 in Initiation of Zygotic Development.	Plant Cell Physiol.	60(4)	725-737	2019	_,CYP709C5,PLT6,GSTU42,RFPH2-8,_,_,HSR203J,OPR5,WRKY107,_,UCL6,_,_,YUCCA14,_,_,_,_,BGL2,PLT5,BTBN19,MADS77,PLT3,WRKY77	,OsCYP709C5,OsPLT6, AP2/EREBP#118, AP2/EREBP118, BBM1, OsBBM1, OsBBML1, BBML1, OsASGR-BBML1, ASGR-BBML1,OsGSTU42,OsRFPH2-8,,  OsRING68, RING68,,,Hsr203j, OsHsr203j,OsOPR5, OsOPR6, OsOPR06-2, OPR4,OsWRKY107,Os_F0794, OsFBDUF48, FBDUF48, PEG3,  OsFBDUF48, FBDUF48,OsUCL6,,,OsYUCCA14, OsYUC14,,,,,OsBGL2,OsPLT5, AP2/EREBP5, AP2/EREBP#005, BBM3, OsBBM3, BBM1, OsBBM1,OsBTBN19,OsMADS77,OsPLT3, AP2/EREBP#018, AP2/EREBP18, BBM2, OsBBM2,OsWRKY77, WRKY-77
47092	30883799	Lam P.Y., Lui A.C.W., Yamamura M., Wang L., Takeda Y., Suzuki S., Liu H., Zhu F.Y., Chen M.X., Zhang J., Umezawa T., Tobimatsu Y., Lo C.	Recruitment of specific flavonoid B-ring hydroxylases for two independent biosynthesis pathways of flavone-derived metabolites in grasses.	New Phytol.	223(1)	204-219	2019	CYP93G2,F3'H,CYP75B4,CYP93G1	OsCYP93G2, OsF2H, F2H, OsCYP71S1, CYP71S1,OsF3'H, OsCYP75B3, CYP75B3, OsF3'H10, F3'H10, OsCYP71P3, CYP71P3,OsCYP75B4, OsC5'H, C5'H, OsF3'H9, F3'H9, OsCYP71P2, CYP71P2,OsCYP93G1, OsFNSII, FNSII, OsCYP71S4, CYP71S4
47093	30989404	Ke Y., Kang Y., Wu M., Liu H., Hui S., Zhang Q., Li X., Xiao J., Wang S.	Jasmonic Acid-Involved OsEDS1 Signaling in Rice-Bacteria Interactions.	Rice (N Y)	12(1)	25	2019	TIFY10C,PR1A,EDS1,PR5,WRKY45,CHT1,_,JAR2,WRKY13,PAD4,AOS2,JAR1,NH1	OsJAZ7, JAZ7, OsJAZ 8, OsJAZ8, Os-JAZ8, JAZ8, OsTIFY10c, OsTIFY10c/OsJAZ8,OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1, OsPR1b, PR1alpha, OsPR1alpha,OsEDS1,OsPR5, Pir2, PR-5, PR5-1,OsWRKY45, OsWRKY45-1, OsWRKY45-2, WRKY45-1, WRKY45-2,Cht1*(Chi1), Ch16, Cht1, CHT-1, CH16, RC24, OsChia1a, OsChia1, Chi1, Cht1*, Chi-1, Cht-1, Cht1, RCC1, OsCht-1, PR3, OsPR3,Lox2:Os:1, OsLOX9, LOX9, OsLOX8, LOX8, OsLOX2, LOX2, OsRLL, OsHI-LOX, HI-LOX, RLL2 LOX, RLL2, Lox2osPil, OsLOX2;1, LOX2;1, OsLOX1, OsLOX7, LOX7,OsJAR2, OsGH3.3, GH3.3, OsGH3-3, JAR2/GH3-3, GH3-3, OsGH3.3/OsJAR2,OsWRKY13,OsPAD4,OsAOS2, CYP74A2, OsAOS, OsAOS1,OsJAR1, OsGH3.5, GH3.5, OsGH3-5, GH3-5,OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2, DLN5, OsDLN5,  OsBTBA1, BTBA1
47094	30887532	Yuan S., Kim S.C., Deng X., Hong Y., Wang X.	Diacylglycerol kinase and associated lipid mediators modulate rice root architecture.	New Phytol.	223(1)	261-276	2019	IAA24,PRL5,DGK3,PIN1A,YUCCA7,DGK8,GXMT1,DRP-RP13 ,DGK7,DGK2,BIDK1,DGK5,DGK4,DGK6	OsIAA24,OsGA20ox4, ga20ox4, GA20ox2, Prl5, Prl5/GA20ox4, OsPrl5,OsDGK3,PIN1C, OsPIN1C, OsPIN1c, OsPIN1a,OsYUCCA7, OsYUC7, OsYUC5, YUC5, YUC7,OsDGK8,OsGXMT1,OsDRP-RP13 ,OsDGK7,OsDGK2,OsBIDK1, OsDGK1, DGK1,OsDGK5,OsDGK4,OsSTA208, OsDGK6
47095	31084878	Hui S., Liu H., Zhang M., Chen D., Li Q., Tian J., Xiao J., Li X., Wang S., Yuan M.	The host basal transcription factor IIA subunits coordinate for facilitating infection of TALEs-carrying bacterial pathogens in rice.	Plant Sci.	284	48-56	2019		
47096	30912217	Zhang Z., Zhao H., Huang F., Long J., Song G., Lin W.	The 14-3-3 protein GF14f negatively affects grain filling of inferior spikelets of rice (Oryza sativa L.).	Plant J.	99(2)	344-358	2019		
47097	31481831	Baltazar M.D., Ignacio J.C.I., Thomson M.J., Ismail A.M., Mendioro M.S., Septiningsih E.M.	QTL mapping for tolerance to anaerobic germination in rice from IR64 and the <i>aus</i> landrace Kharsu 80A.	Breed. Sci.	69(2)	227-233	2019		
47098	30971449	Kumar A., Singh A., Kumar P., Sarkar A.K.	Giberellic Acid-Stimulated Transcript Proteins Evolved through Successive Conjugation of Novel Motifs and Their Subfunctionalization.	Plant Physiol.	180(2)	998-1012	2019		
47099	31002982	Ruan W., Guo M., Wang X., Guo Z., Xu Z., Xu L., Zhao H., Sun H., Yan C., Yi K.	Two RING-Finger Ubiquitin E3 Ligases Regulate the Degradation of SPX4, An Internal Phosphate Sensor, for Phosphate Homeostasis and Signaling in Rice.	Mol Plant	12(8)	1060-1074	2019	SPX4,RING158,PHR2,miR827,PT10,SPX1,IPS1,SRFP1	OsSPX4, Os-SPX4,SDEL1, OsSDEL1, OsRING158,OsPHR2, Os-PHR2,miR827a, OsmiR827a, miR827, osa-miR827, osa-MIR827, OsMiR827, miR827b, osa-miR827b, osa-MIR827b,OsPT10, PHT1-10, OsPht1;10,OsSPX1,OsIPS1,OsSRFP1,  OsRING157, RING157, SDEL2, OsSDEL2
47100	30984885	Elsoragaby S., Yahya A., Mahadi M.R., Nawi N.M., Mairghany M.	Comparative field performances between conventional combine and mid-size combine in wetland rice cultivation.	Heliyon	5(4)	e01427	2019		
47101	30803106	Lin D., Zhang L., Mei J., Chen J., Piao Z., Lee G., Dong Y.	Mutation of the rice TCM12 gene encoding 2,3-bisphosphoglycerate-independent phosphoglycerate mutase affects chlorophyll synthesis, photosynthesis and chloroplast development at seedling stage at low temperatures.	Plant Biol (Stuttg)	21(4)	585-594	2019	PSBA,CAB1R,FGL,PSAA,TCM12,YGL10,RBCL	PsbA, psbA, OsPsbA, PSBD1, OsPSBD1, psbD1,cab1R, LHCP, CAB, OsLhcb1, Lhcb1, Cab1, OsCAB1, Lhcb1b, OsLhcb1b, CAB2R,fgl(fl), fl, fgl, OsFGL, OsPorB, PoPA, PORA, porA, OsPORA, PORB, OsPORB,PsaA, psaA, PsAA1, psaA1,OsTCM12, iPGAM, OsiPGAM,CAO, OsCAO, CAO1, OsCAO1, Oslls1, Lls1, DVR, PGL,rbcL, rbcA, OsrbcL
47102	31023213	Thirugnanasambandam P.P., Mason P.J., Hoang N.V., Furtado A., Botha F.C., Henry R.J.	Analysis of the diversity and tissue specificity of sucrose synthase genes in the long read transcriptome of sugarcane.	BMC Plant Biol.	19(1)	160	2019		
47103	31003496	Elsadek M.A., Yousef E.A.A.	Smoke-Water Enhances Germination and Seedling Growth of Four Horticultural Crops.	Plants (Basel)	8(4)		2019		
47104	30959555	Negishi K., Kaya H., Abe K., Hara N., Saika H., Toki S.	An adenine base editor with expanded targeting scope using SpCas9-NGv1 in rice.	Plant Biotechnol. J.	17(8)	1476-1478	2019		
47105	30951979	Tiwari P.K., Shweta, Singh A.K., Singh V.P., Prasad S.M., Ramawat N., Tripathi D.K., Chauhan D.K., Rai A.K.	Liquid assisted pulsed laser ablation synthesized copper oxide nanoparticles (CuO-NPs) and their differential impact on rice seedlings.	Ecotoxicol. Environ. Saf.	176	321-329	2019		
47106	31035443	Jiang M., Liu Y., Liu Y., Tan Y., Huang J., Shu Q.	Mutation of <i>Inositol 1,3,4-trisphosphate 5/6-kinase6</i> Impairs Plant Growth and Phytic Acid Synthesis in Rice.	Plants (Basel)	8(5)		2019		
47107	31001689	Liu J., Hasanuzzaman M., Wen H., Zhang J., Peng T., Sun H., Zhao Q.	High temperature and drought stress cause abscisic acid and reactive oxygen species accumulation and suppress seed germination growth in rice.	Protoplasma	256(5)	1217-1227	2019		
47108	30963280	Yang G., Chen S., Chen L., Sun K., Huang C., Zhou D., Huang Y., Wang J., Liu Y., Wang H., Chen Z., Guo T.	Development of a core SNP arrays based on the KASP method for molecular breeding of rice.	Rice (N Y)	12(1)	21	2019		
47109	31201999	Sun J., He N., Niu L., Huang Y., Shen W., Zhang Y., Li L., Hou C.	Global Quantitative Mapping of Enhancers in Rice by STARR-seq.	Genomics, proteomics & bioinformatics	17(2)	140-153	2019		
47110	30994297	Wu N., Shao J.W., Sheng R., Tang Y.F., Zhang W.Z., Wei W.X.	[Variation of community structure and function of rhizospheric denitrifiers at tillering and booting stages of rice].	Ying Yong Sheng Tai Xue Bao	30(4)	1344-1350	2019		
47111	30963249	Pradhan S.K., Pandit E., Pawar S., Bharati B., Chatopadhyay K., Singh S., Dash P., Reddy J.N.	Association mapping reveals multiple QTLs for grain protein content in rice useful for biofortification.	Mol. Genet. Genomics	294(4)	963-983	2019		
47112	31035917	Ryu M.Y., Cho S.K., Hong Y., Kim J., Kim J.H., Kim G.M., Chen Y.J., Knoch E., M?ller BL., Kim W.T., Lyngkj?r MF., Yang S.W.	Classification of barley U-box E3 ligases and their expression patterns in response to drought and pathogen stresses.	BMC Genomics	20(1)	326	2019		
47113	30970602	Fu Y., Gu Q., Dong Q., Zhang Z., Lin C., Hu W., Pan R., Guan Y., Hu J.	Spermidine Enhances Heat Tolerance of Rice Seeds by Modulating Endogenous Starch and Polyamine Metabolism.	Molecules	24(7)		2019		
47114	30882149	Kadam N.N., Jagadish S.V.K., Struik P.C., van der Linden CG., Yin X.	Incorporating genome-wide association into eco-physiological simulation to identify markers for improving rice yields.	J. Exp. Bot.	70(9)	2575-2586	2019		
47115	30950198	Hu X., Xie W., Wu C., Xu S.	A directed learning strategy integrating multiple omic data improves genomic prediction.	Plant Biotechnol. J.	17(10)	2011-2020	2019		
47116	30589364	Li H., Xue D., Tian F., Yuan X., Yang F., Chen H., Hutchins W., Yang C.H., He C.	<i>Xanthomonas oryzae</i> pv. <i>oryzae</i> Response Regulator TriP Regulates Virulence and Exopolysaccharide Production Via Interacting With c-di-GMP Phosphodiesterase PdeR.	Mol. Plant Microbe Interact.	32(6)	729-739	2019		
47117	31029569	Ma K., Han J., Hao Y., Yang Z., Chen J., Liu Y.G., Zhu Q., Chen L.	An effective strategy to establish a male sterility mutant mini-library by CRISPR/Cas9-mediated knockout of anther-specific genes in rice.	J Genet Genomics	46(5)	273-275	2019		
47118	30975075	Xiao J., Hu R., Gu T., Han J., Qiu D., Su P., Feng J., Chang J., Yang G., He G.	Genome-wide identification and expression profiling of trihelix gene family under abiotic stresses in wheat.	BMC Genomics	20(1)	287	2019	MSL37,MSL40,MSL13	OsMSL37, DLN247, OsDLN247, OsGTgamma-2, GTgamma-2,OsMSL40, DLN253, OsDLN253, OsGTgamma-3, GTgamma-3,OsMSL13, DLN59, OsDLN59, OsGTgamma-1, GTgamma-1
47119	31200424	Gonz?lez-Cruz M?., Ferreiro-Mar?n A., Meave-Cueva LG., Muriel-Vizca?no R.	[Food protein-induced enterocolitis syndrome. A case report].	Rev Alerg Mex	66(2)	257-262			
47120	30992336	El Mahi H., P?rez-Hormaeche J., De Luca A., Villalta I., Espartero J., G?mez-Arjona F., Fern?ndez JL., Bund? M., Mendoza I., Mieulet D., Lalanne E., Lee S.Y., Yun D.J., Guiderdoni E., Aguilar M., Leidi E.O., Pardo J.M., Quintero F.J.	A Critical Role of Sodium Flux via the plasma membrane Na+/H+ exchanger SOS1 in the salt tolerance of Rice.	Plant Physiol.	180(2)	1046-1065	2019		
47121	30992130	Ke Y., Wu M., Zhang Q., Li X., Xiao J., Wang S.	Hd3a and OsFD1 negatively regulate rice resistance to Xanthomonas oryzae pv. oryzae and Xanthomonas oryzae pv. oryzicola.	Biochem. Biophys. Res. Commun.	513(4)	775-780	2019		
47122	31036930	Zhang J., Liu Y.X., Zhang N., Hu B., Jin T., Xu H., Qin Y., Yan P., Zhang X., Guo X., Hui J., Cao S., Wang X., Wang C., Wang H., Qu B., Fan G., Yuan L., Garrido-Oter R., Chu C., Bai Y.	NRT1.1B is associated with root microbiota composition and nitrogen use in field-grown rice.	Nat. Biotechnol.	37(6)	676-684	2019		
47123	31481837	Feng M., Cai H., Guan Y., Sun J., Zhang L., Cang J.	Analyses of transgenic fibroblast growth factor 21 mature rice seeds.	Breed. Sci.	69(2)	279-288	2019		
47124	31002981	Zhang W., Tan L., Sun H., Zhao X., Liu F., Cai H., Fu Y., Sun X., Gu P., Zhu Z., Sun C.	Natural Variations at TIG1 Encoding a TCP Transcription Factor Contribute to Plant Architecture Domestication in Rice.	Mol Plant	12(8)	1075-1089	2019	TIG1	OsTCP22, OsTCP15, TCP22, TCP15, OsTIG1
47125	31052148	Chu M.J., Du Y.M., Liu X.M., Yan N., Wang F.Z., Zhang Z.F.	Extraction of Proanthocyanidins from Chinese Wild Rice (<i>Zizania latifolia</i>) and Analyses of Structural Composition and Potential Bioactivities of Different Fractions.	Molecules	24(9)		2019		
47126	30866160	Biswal A.K., McConnell E.W., Werth E.G., Lo S.F., Yu S.M., Hicks L.M., Jones A.M.	The Nucleotide-Dependent Interactome of Rice Heterotrimeric G-Protein alpha -Subunit.	Proteomics	19(9)	e1800385	2019		
47127	31481836	Muto C., Ebana K., Kawano K., Bounphanousay V., Bounphanousay C., Kanyavong K., Inthapanya P., Boualaphanh C., Sato T., Ishikawa R., Sato Y.I., Yanagihara S., Fukuta Y.	Genetic variation in rice (<i>Oryza sativa</i> L.) germplasm from northern Laos.	Breed. Sci.	69(2)	272-278	2019		
47128	31002444	Zhu Y., Lin Y., Chen S., Liu H., Chen Z., Fan M., Hu T., Mei F., Chen J., Chen L., Wang F.	CRISPR/Cas9-mediated functional recovery of the recessive Rc allele to develop red rice.	Plant Biotechnol. J.			2019		
47129	30942482	Zhan X., Shen Q., Chen J., Yang P., Wang X., Hong Y.	Rice sulfoquinovosyltransferase SQD2.1 mediates flavonoid glycosylation and enhances tolerance to osmotic stress.	Plant Cell Environ.	42(7)	2215-2230	2019	PLS2,SQD2.2,SQD2.1,SQD1	SQD2.3, OsSQD2.3,OsSQD2, SQD2, OsSQD2.2,OsSQD2.1,OsSQD1
47130	31001951	Ye J., Zhang Y., Fu Y., Zhou M., Tang D.	[Genome-wide identification and expression analysis of gibberellin biosynthesis, metabolism and signaling family genes in Phyllostachys edulis].	Sheng Wu Gong Cheng Xue Bao	35(4)	647-666	2019		
47131	30924996	Treesubsuntorn C., Thiravetyan P.	Calcium acetate-induced reduction of cadmium accumulation in Oryza sativa: Expression of auto-inhibited calcium-ATPase and cadmium transporters.	Plant Biol (Stuttg)	21(5)	862-872	2019	ACA6,ACA8,HMA2,LCT1,LCD1	osACA6, OsACA1, OsACA6, OsPM1ATPaseII, ACA3,osACA8, OsACA7, ACA13,OsHMA2, osHMA2, OsHMA2v ,OsLCT1,NRAMP5, OsNRAMP5, OsNramp5, OsLCD1
47132	30913300	Krattinger S.G., Kang J., Br?unlich S., Boni R., Chauhan H., Selter L.L., Robinson M.D., Schmid M.W., Wiederhold E., Hensel G., Kumlehn J., Sucher J., Martinoia E., Keller B.	Abscisic acid is a substrate of the ABC transporter encoded by the durable wheat disease resistance gene Lr34.	New Phytol.	223(2)	853-866	2019		
47133	30962576	Sekhar S., Panda D., Kumar J., Mohanty N., Biswal M., Baig M.J., Kumar A., Umakanta N., Samantaray S., Pradhan S.K., Shaw B.P., Swain P., Behera L.	Comparative transcriptome profiling of low light tolerant and sensitive rice varieties induced by low light stress at active tillering stage.	Sci Rep	9(1)	5753	2019		
47134	31027369	Wada S., Takagi D., Miyake C., Makino A., Suzuki Y.	Responses of the Photosynthetic Electron Transport Reactions Stimulate the Oxidation of the Reaction Center Chlorophyll of Photosystem I, P700, under Drought and High Temperatures in Rice.	Int J Mol Sci	20(9)		2019		
47135	30951774	Liu M., Wu X., Huo W., Li J., Weng X., Liu J., Fang Z.	Differential inhibition of GH family 11 endo-xylanase by rice xylanase inhibitor and verification by a modified yeast two-hybrid system.	Int. J. Biol. Macromol.	132	514-523	2019		
47136	30986643	Kumar U., Kaviraj M., Panneerselvam P., Priya H., Chakraborty K., Swain P., Chatterjee S.N., Sharma S.G., Nayak P.K., Nayak A.K.	Ascorbic acid formulation for survivability and diazotrophic efficacy of Azotobacter chroococcum Avi2 (MCC 3432) under hydrogen peroxide stress and its role in plant-growth promotion in rice (Oryza sativa L.).	Plant Physiol. Biochem.	139	419-427	2019		
47137	30976929	Li N., Zheng H., Cui J., Wang J., Liu H., Sun J., Liu T., Zhao H., Lai Y., Zou D.	Genome-wide association study and candidate gene analysis of alkalinity tolerance in japonica rice germplasm at the seedling stage.	Rice (N Y)	12(1)	24	2019		
47138	31037548	Hu K., Qiu L., Ding W., He H., Li Y.	Evaluation of reference genes and expression of key genes involved in the isoprenoid metabolic pathway of rice leaves after infection by the Southern rice black-streaked dwarf virus.	Mol. Biol. Rep.	46(4)	3945-3953	2019		
47139	31069813	Zhang J., Li D., Xu X., Ziska L.H., Zhu J., Liu G., Zhu C.	The potential role of sucrose transport gene expression in the photosynthetic and yield response of rice cultivars to future CO2 concentration.	Physiol Plant			2019		
47140	30974865	Kaushal M.	Microbes in Cahoots with Plants: MIST to Hit the Jackpot of Agricultural Productivity during Drought.	Int J Mol Sci	20(7)		2019		
47141	30919975	Zhou Z., Pang Z., Zhao S., Zhang L., Lv Q., Yin D., Li D., Liu X., Zhao X., Li X., Wang W., Zhu L.	Importance of OsRac1 and RAI1 in signalling of nucleotide-binding site leucine-rich repeat protein-mediated resistance to rice blast disease.	New Phytol.	223(2)	828-838	2019	RAC1,RAI1,PID3	OsRAC1, OsRac1, Os Rac1, Rac1, Os-Rac1,OsRAI1, OsbHLH003, bHLH003, bHLH3,Pi-d3, Pid3, Pi25, Pid3-I1, qBRM6.2
47142	30951893	Jyoti A., Kaushik S., Srivastava V.K., Datta M., Kumar S., Yugandhar P., Kothari S.L., Rai V., Jain A.	The potential application of genome editing by using CRISPR/Cas9, and its engineered and ortholog variants for studying the transcription factors involved in the maintenance of phosphate homeostasis in model plants.	Semin. Cell Dev. Biol.			2019		
47143	31004558	Chen J., Zhou H., Xie W., Xia D., Gao G., Zhang Q., Wang G., Lian X., Xiao J., He Y.	Genome-wide association analyses reveal the genetic basis of combining ability in rice.	Plant Biotechnol. J.			2019		
47144	31048024	Shao G., Lu Z., Xiong J., Wang B., Jing Y., Meng X., Liu G., Ma H., Liang Y., Chen F., Wang Y., Li J., Yu H.	Tiller Bud Formation Regulators MOC1 and MOC3 Cooperatively Promote Tiller Bud Outgrowth by Activating FON1 Expression in Rice.	Mol Plant	12(8)	1090-1102	2019	FON1,TAB1,MOC1	OsFON1, fon1, OsRLCK219, RLCK219,Os WUS, WUS, OsWOX1, WOX1, OsWUS, OsTAB, TAB1/WUS, MOC3, MOC3/OsWUS, SRT1, MOC3/TAB1/SRT1, DC1, OsDC1, DAP1, OsDAP1,moc1, OsMOC1, OsGRAS-33, OsGRAS33, GRAS-33, GRAS33, GNP6, OsGNP6
47145	31035645	Dong Q., Zhang Y.X., Zhou Q., Liu Q.E., Chen D.B., Wang H., Cheng S.H., Cao L.Y., Shen X.H.	UMP kinase Regulates Chloroplast Development and Cold Response in Rice.	Int J Mol Sci	20(9)		2019		
47146	31036069	Butt H., Eid A., Momin A.A., Bazin J., Crespi M., Arold S.T., Mahfouz M.M.	CRISPR directed evolution of the spliceosome for resistance to splicing inhibitors.	Genome Biol.	20(1)	73	2019	SF3B1	OsSF3B1, SGR
47147	30976020	Yusa A., Neriya Y., Hashimoto M., Yoshida T., Fujimoto Y., Hosoe N., Keima T., Tokumaru K., Maejima K., Netsu O., Yamaji Y., Namba S.	Functional conservation of EXA1 among diverse plant species for the infection by a family of plant viruses.	Sci Rep	9(1)	5958	2019		
47148	30972510	Huang Y.C., Yeh T.H., Yang C.Y.	Ethylene signaling involves in seeds germination upon submergence and antioxidant response elicited confers submergence tolerance to rice seedlings.	Rice (N Y)	12(1)	23	2019		
47149	31041536	Rohilla P., Yadav J.P.	Acute salt stress differentially modulates nitrate reductase expression in contrasting salt responsive rice cultivars.	Protoplasma	256(5)	1267-1278	2019		
47150	31004275	Jiang M., Hu H., Kai J., Traw M.B., Yang S., Zhang X.	Different knockout genotypes of OsIAA23 in rice using CRISPR/Cas9 generating different phenotypes.	Plant Mol. Biol.	100(4-5)	467-479	2019		
47151	30859576	Bellasio C., Farquhar G.D.	A leaf-level biochemical model simulating the introduction of C2 and C4 photosynthesis in C3 rice: gains, losses and metabolite fluxes.	New Phytol.	223(1)	150-166	2019		
47152	30932379	Huang D.Q., Chen R., Wang Y.Q., Hong J., Zhou X.P., Wu J.X.	Development of a colloidal gold-based immunochromatographic strip for rapid detection of Rice stripe virus.	J Zhejiang Univ Sci B	20(4)	343-354			
47153	30948780	Zhu C., Xiang J., Zhang Y., Zhang Y., Zhu D., Chen H.	Mechanized transplanting with side deep fertilization increases yield and nitrogen use efficiency of rice in Eastern China.	Sci Rep	9(1)	5653	2019		
47154	31041567	Mbanjo E.G.N., Jones H., Caguiat X.G.I., Carandang S., Ignacio J.C., Ferrer M.C., Boyd L.A., Kretzschmar T.	Exploring the genetic diversity within traditional Philippine pigmented Rice.	Rice (N Y)	12(1)	27	2019		
47155	30590457	Ahsan A., Monir M., Meng X., Rahaman M., Chen H., Chen M.	Identification of epistasis loci underlying rice flowering time by controlling population stratification and polygenic effect.	DNA Res.	26(2)	119-130	2019		
47156	30992303	Fuentes R.R., Chebotarov D., Duitama J., Smith S., De la Hoz JF., Mohiyuddin M., Wing R.A., McNally K.L., Tatarinova T., Grigoriev A., Mauleon R., Alexandrov N.	Structural variants in 3000 rice genomes.	Genome Res.	29(5)	870-880	2019		
47157	31084873	Chou H.L., Tian L., Washida H., Fukuda M., Kumamaru T., Okita T.W.	The rice storage protein mRNAs as a model system for RNA localization in higher plants.	Plant Sci.	284	203-211	2019		
47158	31026778	Zou X., Wang Q., Chen P., Yin C., Lin Y.	Strigolactones regulate shoot elongation by mediating gibberellin metabolism and signaling in rice (Oryza sativa L.).	J. Plant Physiol.	237	72-79	2019		
47159	30955506	Basunia M.A., Nonhebel H.M.	Hormonal regulation of cereal endosperm development with a focus on rice (Oryza sativa).	Funct. Plant Biol.			2019		
47160	31039458	Han X., Zhang C., Wang C., Huang Y., Liu Z.	Gadolinium inhibits cadmium transport by blocking non-selective cation channels in rice seedlings.	Ecotoxicol. Environ. Saf.	179	160-166	2019		
47161	31161002	De Leon TB., Karn E., Al-Khatib K., Espino L., Blank T., Andaya C.B., Andaya V.C., Brim-DeForest W.	Genetic variation and possible origins of weedy rice found in California.	Ecol Evol	9(10)	5835-5848	2019		
47162	31030277	Faillace G.R., Turchetto-Zolet AC., Guzman F.L., de Oliveira-Busatto LA., Bodanese-Zanettini MH.	Genome-wide analysis and evolution of plant thaumatin-like proteins: a focus on the origin and diversification of osmotins.	Mol. Genet. Genomics			2019		
47163	30894459	Zhang X., Zhang Y., Wang T., Li Z., Cheng J., Ge H., Tang Q., Chen K., Liu L., Lu C., Guo J., Zheng B., Zheng Y.	A Comprehensive Map of Intron Branchpoints and Lariat RNAs in Plants.	Plant Cell	31(5)	956-973	2019		
47164	30833384	Shao L., Xing F., Xu C., Zhang Q., Che J., Wang X., Song J., Li X., Xiao J., Chen L.L., Ouyang Y., Zhang Q.	Patterns of genome-wide allele-specific expression in hybrid rice and the implications on the genetic basis of heterosis.	Proc. Natl. Acad. Sci. U.S.A.	116(12)	5653-5658	2019		
47165	30886126	Zhang L., Gao C., Mentink-Vigier F., Tang L., Zhang D., Wang S., Cao S., Xu Z., Liu X., Wang T., Zhou Y., Zhang B.	Arabinosyl Deacetylase Modulates the Arabinoxylan Acetylation Profile and Secondary Wall Formation.	Plant Cell	31(5)	1113-1126	2019	GELP62	OsGELP62, OsGELP62a, OsGELP62b, OsGELP62c, DARX1, OsDARX1
47166	30872321	Medici A., Szponarski W., Dangeville P., Safi A., Dissanayake I.M., Saenchai C., Emanuel A., Rubio V., Lacombe B., Ruffel S., Tanurdzic M., Rouached H., Krouk G.	Identification of Molecular Integrators Shows that Nitrogen Actively Controls the Phosphate Starvation Response in Plants.	Plant Cell	31(5)	1171-1184	2019		
47167	30902896	Zheng S., Li J., Ma L., Wang H., Zhou H., Ni E., Jiang D., Liu Z., Zhuang C.	<i>OsAGO2</i> controls ROS production and the initiation of tapetal PCD by epigenetically regulating <i>OsHXK1</i> expression in rice anthers.	Proc. Natl. Acad. Sci. U.S.A.	116(15)	7549-7558	2019		
47168	30923230	Gao X., Zhang J.Q., Zhang X., Zhou J., Jiang Z., Huang P., Tang Z., Bao Y., Cheng J., Tang H., Zhang W., Zhang H., Huang J.	Rice qGL3/OsPPKL1 Functions with the GSK3/SHAGGY-Like Kinase OsGSK3 to Modulate Brassinosteroid Signaling.	Plant Cell	31(5)	1077-1093	2019	BZR1,D2,D11,DLT,GL3.1,GSK4	OsBZR1, Os BZR1, OsBES1-6, BES1-6,d2, dwf2, CYP90D2, D2/CYP90D2, OsD2, SMG11, OsSMG11, D2/SMG11, OsD2a, OsD2b,d11(d8), dwf10, d8, D11/CYP724B1, d11, CYP724B1, GNS4, OsD11, PMM1, OsPMM1, PMM1/D11, NBG4, OsCPB1, CPB1, CPB1/D11,dlt, OsGRAS32, OsDLT, OsDLT1, DTL1, OsGRAS-32, OsGRAS32, GRAS-32, GRAS32, SMOS2/DLT, SMOS2, OsSMOS2, OsGS6, GS6,OsPPKL1, PPKL1, qGL3, OsPP54, PP54, OsGL3.1, qGL3/OsPPKL1,OsSK23/OsGSK4, OsSK23, OsGSK4, SK23, OsGSK3, GSK3
47169	30858135	Akhter D., Qin R., Nath U.K., Eshag J., Jin X., Shi C.	A rice gene, OsPL, encoding a MYB family transcription factor confers anthocyanin synthesis, heat stress response and hormonal signaling.	Gene	699	62-72	2019	PL	OsMYB55, OsMYB-2, MYB55, MYB-2, OsPL, Os2R_MYB60, 2R_MYB60
47170	30810167	Lee H.Y., Chen Z., Zhang C., Yoon G.M.	Editing of the OsACS locus alters phosphate deficiency-induced adaptive responses in rice seedlings.	J. Exp. Bot.	70(6)	1927-1940	2019	PT3,ACS1,ARF1,IAA1,ACS3,YUCCA4,PT6,SPX1,ACS5,IAA8,LRA1,PT2,ACS4,SPX3,PIN10A,ACS2	OsPT3, PHT1-3, OsPht1;3, OjPT1, PHT1;3,ACC1*, OsACS1, Os-ACS1, ACC1, OsACC1,OsARF1, arf1, OsARF23, ARF23,OsIAA1, OsIAA4,ACC3*, ACC3, OsACS3, OS-ACS3, OsACC3,OsYUCCA4, OsYUC4, YUC4, YUCCA6, OsYUCCA6,OsPT6, PHT1-6, OsPht1;6, OsLPT6:1, OsLPT1, OsPT6:1, Pht1;6, LPT6:1, LPT1, PT6:1,OsSPX1,OsACS5, OS-ACS5, OsBphi008a,OsIAA8,OsPIN2, PIN2, OsLRA1, WAR1, OsWAR1,OsPT2, PTH1-2, OsPht1;2, PHT1;2, OsPHT1;2,OsACS4, OS-ACS4,OsSPX3,PIN3A, OsPIN3a, OsPIN3t, OsPIN10a, OsPIN3,OsACS2, Os-ACS2
47171	30903268	Yu X.L., Wang H.Y., Leung D.W.M., He Z.D., Zhang J.J., Peng X.X., Liu E.E.	Overexpression of OsIAAGLU reveals a role for IAA-glucose conjugation in modulating rice plant architecture.	Plant Cell Rep.	38(6)	731-739	2019	IAGLU	OsIAGLU, OsIAAGLU, IAAGLU, OsIAGT1, IAGT1, UGT74A2, OsUGT74A2
47172	30840202	Ke S., Luan X., Liang J., Hung Y.H., Hsieh T.F., Zhang X.Q.	Rice OsPEX1, an extensin-like protein, affects lignin biosynthesis and plant growth.	Plant Mol. Biol.	100(1-2)	151-161	2019	CCR24,_,_,NAC31,GH2,NAC90,_,PEX1,_,PRX135	OsCCR24,OsPAL07, OsPAL, PAL07, OsPAL6, PAL6, PAL1, OsPAL7, PAL7,OsPAL04, PAL04, PAL, OsPAL7, PAL7,ONAC031, ONAC31, OsSWN3,gh2, CAD2, CAD, OsCAD2, OsGH2 ,OsSWN7, SWN7, ONAC090, ONAC90, VND6, VND4/5/6, OsVND6, OsVND4/5/6, DLN155, OsDLN155,ONAC007, ONAC7, OsSND1, SND1, OsSWN1, SWN1, DLN157, OsDLN157,OsPEX1,prx130, OsPRX2,Pox, prx135, OsPRX1, OsPRX4
47173	30890663	Wang J., Wu B., Lu K., Wei Q., Qian J., Chen Y., Fang Z.	The Amino Acid Permease 5 (OsAAP5) Regulates tiller number and grain yield in Rice.	Plant Physiol.	180(2)	1031-1045	2019	AAP10C,D3,D53,AAP6,AAP10A,GN1A	OsAAP10C, OsAAP5, AAP5,d3, dwf3, D3/OsMAX2, Os_F0760, SOL1, OsORE9, ORE9, MAX2, OsRFPH2-10, RFPH2-10, OsD3,  OsFBL27, FBL27,D53(D K3), DK3, Dwf34, SMXL6/7/8, OsD53,OsAAP6, OsAAP1, AAP1,OsAAP10A, OsAAP17, AAP17,Gn1a, OsCKX2, CKX2, ckx2, Gn1a/OsCKX2, Os CKX2, CKX2/Gn1a
47174	30927053	Xie C., Zhang G., An L., Chen X., Fang R.	Phytochrome-interacting factor-like protein OsPIL15 integrates light and gravitropism to regulate tiller angle in rice.	Planta	250(1)	105-114	2019	PIL15,PHYB	OsPIL15, OsbHLH105, PIF3, OsPIF3,phyB, PHYB1, OsPHYB, OsphyB, OsYHB, YHB, OsPHYB/OsYHB
47175	30830459	Mirdar Mansuri R., Shobbar Z.S., Babaeian Jelodar N., Ghaffari M.R., Nematzadeh G.A., Asari S.	Dissecting molecular mechanisms underlying salt tolerance in rice: a comparative transcriptional profiling of the contrasting genotypes.	Rice (N Y)	12(1)	13	2019	TOM1,NAAT1,ELIP,GELP81	OsTOM1, ZIFL4, OsZIFL4 ,OsNAAT1,OsELIP,OsGELP81
47176	30886113	Huang S., Liang Z., Chen S., Sun H., Fan X., Wang C., Xu G., Zhang Y.	A Transcription Factor, OsMADS57, Regulates Long-Distance Nitrate Transport and Root Elongation.	Plant Physiol.	180(2)	882-895	2019	NRT2.2,HTNE,NRT2.1,MADS57,NRT2.4	OsNRT2.2, OsNRT2.1,NRT2.3, OsNRT2.3, OsNRT2;1, OsNRT2.3a, OsNRT2.3b, OsNRT2;3a, OsNRT2.5 ,OsNRT2.1, OsNRT2.2,OsMADS57, MADS-57,OsNRT2.4
47177	31128716	Sun M., Shen Y., Li H., Yang J., Cai X., Zheng G., Zhu Y., Jia B., Sun X.	The multiple roles of OsmiR535 in modulating plant height, panicle branching and grain shape.	Plant Sci.	283	60-69	2019		
47178	30897830	Park S.C., Kim I.R., Hwang J.E., Kim J.Y., Jung Y.J., Choi W., Lee Y., Jang M.K., Lee J.R.	Functional Mechanisms Underlying the Antimicrobial Activity of the <i>Oryza sativa</i> Trx-like Protein.	Int J Mol Sci	20(6)		2019	TRX26	OsTRXh3, TRXH3, OsTrx26, Trx26, antiSTR1, OsTDX, TDX
47179	30843130	Gong P., Luo Y., Huang F., Chen Y., Zhao C., Wu X., Li K., Yang X., Cheng F., Xiang X., Wu C., Pan G.	Disruption of a Upf1-like helicase-encoding gene OsPLS2 triggers light-dependent premature leaf senescence in rice.	Plant Mol. Biol.	100(1-2)	133-149	2019	WRKY13,PSBA,ICL,NCED1,WRKY53,WRKY28,RBCS,WRKY24,PSAE,SGR,PSBC,PSAB,WRKY42,PETA,RPOB,RBCL,ELL,WRKY45,NCED2,PSBB,PSBO,LHCB2.1,ABA8OX3,NCED3,WRKY7,WRKY72,PSAA,PHYA,WRKY79,WRKY76,PLS2,WRKY77,WRKY70,GABA-T,KAT1,ABA8OX2	OsWRKY13,PsbA, psbA, OsPsbA, PSBD1, OsPSBD1, psbD1,OsEnS-107, EnS-107, OsI85, I85, OsICL, Osl85, l43, Osl43, OsL85,OSNCED1, OsNCED-1, OsNCED3, OsNced3, NCED3, OsNCED9, NCED9,OsWRKY53, WRKY-53,OsWRKY28, DLN170, OsDLN170,rbcS, OsRbcS, RBCS-C, RbcS2, OsRBCS2, RbcS1, OsRbcS2, OsrbcS1,OsWRKY24,PsaE, OsPsaE,sgr(t), sgr, OsSGR, OsSgr, SGR1, OsSGR1,psbC, cp43, OsPSBC, OsCP43,PsaB, psaB, PsAA2, psaA2,OsWRKY42, WRKY-42,petA, Cytf, cytF, Cyt f, OsPETA,rpoB, RpoB, Rpobeta,rbcL, rbcA, OsrbcL,chlI, OsChlI, ChlI, CHLI, OsCHLI, OsCHLI/ELL, OsELL,OsWRKY45, OsWRKY45-1, OsWRKY45-2, WRKY45-1, WRKY45-2,OsNCED2, OsNced2, OsCCD4b, CCD4b, OsCCD4c, CCD4c,psbB, OsPSBB,PsbO, psbO, OsPSBO,LHCB, LHCP II, Lhcb2, OsLhcb2, Lhcb2.1, OsLhcb2.1 ,OsABA8OX3, OsABA8ox3, CYP707A7, OsCYP707A7, OsAba-ox3, OsABA8ox3, OsABA8'ox3, ABA8'ox3, OsABAX3, ABAX3, OsABA8'OH3, ABA8'OH3,OSNCED3, OsNCED-3, OsNCED3, OsNCED3a, NCED3a, OsNCED4, NCED4, OsNECD2, OsNCED2b, NCED2b ,OsWRKY7,OsWRKY72, WRKY-72,PsaA, psaA, PsAA1, psaA1,phyA, PHYA* (phyA), PHYA*, Phya, PHY18, phy 18, OsPHYA ,OsWRKY79, WRKY-79,OsWRKY76, OsWRKY76.1, OsWRKY76.2, OsWRKY76.3,RBP-59, OsRBP-59, OsPLS2, HeFP, OsHeFP, OsDNA2_7, DNA2_7,OsWRKY77, WRKY-77,OsWRKY70,Osl2, l2, OsGABA-T,OsI57, I57, OsKAT1, OsACAA1, ACAA1,OsABA8OX2, OsABA8ox2, CYP707A6, OsCYP707A6, OsAba-ox2, OsABA8ox2, OsABA8OH2, ABA8OH2, ABA8'-OH2, OsABA8'ox2, ABA8'ox2, OsABAX2, ABAX2, OsABA8'OH2, ABA8'OH2
47180	30886331	Liu M., Shi Z., Zhang X., Wang M., Zhang L., Zheng K., Liu J., Hu X., Di C., Qian Q., He Z., Yang D.L.	Inducible overexpression of Ideal Plant Architecture1 improves both yield and disease resistance in rice.	Nat Plants	5(4)	389-400	2019	PR1B,GLW7 ,WRKY45,SLR1,WFP,PR1A,SPL7	OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1, OsPR1a, PR1a,OsSPL13, SPL13, OsGLW7,OsWRKY45, OsWRKY45-1, OsWRKY45-2, WRKY45-1, WRKY45-2,slr1-1, slr1, slr, GAI, OsGAI, OsSLR1, Os SLR1, OsRGA1, OsGRAS-18, OsGRAS-18, GRAS-18, GRAS18, SLR-1,OsSPL14, SPL14, IPA1, WFP/IPA1, OsSPL14/WFP/IPA1, OsIPA1,  IPA1/OsSPL14,OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1, OsPR1b, PR1alpha, OsPR1alpha,OsSPL7
47181	30836615	Li Z., Pan X., Guo X., Fan K., Lin W.	Physiological and Transcriptome Analyses of Early leaf senescence for <i>ospls1</i> Mutant Rice (<i>Oryza sativa</i> L.) during the Grain-Filling Stage.	Int J Mol Sci	20(5)		2019	PLS1	OsVHA-A, VHAA1, VHA-A1, OsVHA-A1, OsPLS1, OsPSL1/VHA-A1
47182	30851007	Zhu C.Q., Cao X.C., Bai Z.G., Zhu L.F., Hu W.J., Hu A.Y., Abliz B., Zhong C., Liang Q.D., Huang J., Zhang J.H., Jin Q.Y.	Putrescine alleviates aluminum toxicity in rice (Oryza sativa) by reducing cell wall Al contents in an ethylene-dependent manner.	Physiol Plant			2019	NRAMP4,ACO3,ACS3,ACO7,ACO2,ACS2	OsNRAMP4, Nrat1, Nramp6, OsNRAT1, NRAT1, FCO5,OsACO3, ACO2, OsACO2,ACC3*, ACC3, OsACS3, OS-ACS3, OsACC3,OsACO7,OsACO2, OsACO1,OsACS2, Os-ACS2
47183	30854552	Hartley T.N., Thomas A.S., Maathuis F.J.M.	A role for the OsHKT 2;1 sodium transporter in potassium use efficiency in rice.	J. Exp. Bot.			2019	HKT1	OsHKT1, OsHKT2;1, HKT2;1, Ni (Nipponbare)-OsHKT1, Po (Pokkali)-HKT1, OsHKT1;1, HKT1;1
47184	30878662	Khan I.U., Rono J.K., Zhang B.Q., Liu X.S., Wang M.Q., Wang L.L., Wu X.C., Chen X., Cao H.W., Yang Z.M.	Identification of novel rice (Oryza sativa) HPP and HIPP genes tolerant to heavy metal toxicity.	Ecotoxicol. Environ. Saf.	175	8-18	2019		
47185	30852240	Zhu C.Q., Cao X.C., Zhu L.F., Hu W.J., Hu A.Y., Abliz B., Bai Z.G., Huang J., Liang Q.D., Sajid H., Li Y.F., Wang L.P., Jin Q.Y., Zhang J.H.	Boron reduces cell wall aluminum content in rice (Oryza sativa) roots by decreasing H2O2 accumulation.	Plant Physiol. Biochem.	138	80-90	2019		
47186	30753578	Chongloi G.L., Prakash S., Vijayraghavan U.	Regulation of meristem maintenance and organ identity during rice reproductive development.	J. Exp. Bot.	70(6)	1719-1736	2019		
47187	30926655	Xu M., Tang D., Cheng X., Zhang J., Tang Y., Tao Q., Shi W., You A., Gu M., Cheng Z., Yu H.	OsPINOID Regulates Stigma and Ovule Initiation through Maintenance of the floral meristem by Auxin Signaling.	Plant Physiol.	180(2)	952-965	2019	ETT2,ETT1,OSH1,MP,BIF2,FON2	OsARF2, ARF2, OsETT2, ARF3a, OsARF3a, DLN16, OsDLN16, ARF3,OsARF15, ARF15, OsETT1, ARF3b, OsARF3b, OsARF3-1, ARF3-1, OsARF3, ARF3, DLN154, OsDLN154,OSKN1, Oskn1, OsKN1, OSH1/Oskn1, HB75,OsMP, OsARF5, OsARF11, DLN125, OsDLN125, OsMP/OsARF11,bif2, Osbif2, OsBIF2, OsPID, PID, OsAGC25, AGC25,fon2, OsFON2, FON4, OsFON4, FON2/FON4, TG1
47188	30945674	Sharma G., Upadyay A.K., Biradar H., Sonia, Hittalmani S.	OsNac-like transcription factor involved in regulating seed-storage protein content at different stages of grain filling in rice under aerobic conditions.	J. Genet.	98		2019	NAC5,NAC6	OsNAC5, NAC71, ONAC071, ONAC009, ONAC9, ONAC020, ONAC20, OnNAC5*, OnNAC5, OsNAC5/ONAC009,OsNAC6, ONAC048, NAC48, SNAC2, SNAC2/OsNAC6, OsNAC6/ONAC048, OsSNAC2, SNAC-2, OsSNAC-2, OsNAC2
47189	31481833	Oshima M., Taniguchi Y., Akasaka M., Abe K., Ichikawa H., Tabei Y., Tanaka J.	Development of a visible marker trait based on leaf sheath-specific anthocyanin pigmentation applicable to various genotypes in rice.	Breed. Sci.	69(2)	244-254	2019	F3H1,CHI6,CHI7,PKS2,F3H3,GER5,F3'H,CHI3,F3H2,ANS,RD,B2,C4H2,PKS12,PAL1,_,PKS8,CHS,FLA19,CYP71Y7	OsF3H-1, F3H-1, OsF3H1, OsF3H, F3H, OsF3H3, F3H3,CHI, OsCHI6, OsCHIL1, CHIL1,CHI, OsCHI, OsCHI7, OsCHIL2, CHIL2,CHS, OsPKS02, OsPKS2, PKS02, OsCHS2, CHS2,OsF3H-3, F3H-3, OsF3H3, OsF3H4, F3H4,OsGLP1, GLP1, GER1, GLP110, OsGER1, OsGER5, OsGLP8-14, GLP8-14, OsCDP8.14, CDP8.14,OsF3'H, OsCYP75B3, CYP75B3, OsF3'H10, F3'H10, OsCYP71P3, CYP71P3,gh1, GH1, OsGH1, OsCHI, Cfi, CHI, OsCHI3,OsF3H-2, F3H-2, OsF3H2, FNS1, OsFNS1, OsSAH4, SAH4, OsF3H8, F3H8,ANS, OsANS1, ANS1, LDOX, LDOX1, OsLDOX, OsLDOX1,Rd, DFR, OsDFR, OS-DFR, OsDFR1, DFR1, DFR-1,OsbHLH016, Kala4, OsKala4, OSB2, OsB2,OsC4H, OsC4HL, C4H, OsC4H2,CHS, OsPKS12, OsCHS12, CHS12,OsPAL, Pal1*, Pal1, PAL, Pal_1, PalI, PAL2, OsPAL01, PAL01, OSPAL, CP-1, GP-1, OsPAL1, PAL3, OsPAL3,OsAAE3, AAE3, OsOCS, OCS, 4CL,OsCHS2, CHS2, OsPKS08, OsPKS8, PKS08, OsCHS8, CHS8,CHS*, Oschs, chs, chas, OsCHS, OsCHS1, CHS1, OsPKS26, PKS26, OsCHS24, CHS24, OsCHS27, CHS27,OsFLA19,OsCYP71Y7
47190	30825332	Wu Z., Chen L., Yu Q., Zhou W., Gou X., Li J., Hou S.	Multiple transcriptional factors control stomata development in rice.	New Phytol.	223(1)	220-232	2019	BHLH51,BHLH53,BHLH2,ICE2,SCR1,SHR1,BHLH55,FLP,SHR2,SCR,BHLH54	OsbHLH051, bHLH051, bHLH51, OsFAMA, FAMA,OsbHLH053, bHLH053, bHLH53, OsSPCH2, SPCH2,OsbHLH002, bHLH002, OsbHLH2, bHLH2, OsICE1, ICE1, OsbHLH002/OsICE1,OsbHLH001, bHLH001, OsbHLH1, bHLH1, OsICE2,OsSCR1, OsSCR, OsGRAS-41, OsGRAS41, GRAS-41, GRAS41,OsSHR1, OsGRAS-38, OsGRAS38, GRAS-38, GRAS38, DLN189, OsDLN189, OsSHR, SHR,OsbHLH055, bHLH055, bHLH55, OsMUTE, MUTE,OsFLP,OsSHR2, OsGRAS-15, OsGRAS15, GRAS-15, GRAS15,OsSCR, OsSCR2, SCR2, OsGRAS-51, OsGRAS51, GRAS-51, GRAS51,OsbHLH054, bHLH054, bHLH54, OsSPCH1, SPCH1, SPCH
47191	30889480	Ding L., Uehlein N., Kaldenhoff R., Guo S., Zhu Y., Kai L.	Aquaporin PIP2;1 affects water transport and root growth in rice (Oryza sativa L.).	Plant Physiol. Biochem.	139	152-160	2019	PIP2A	OsPIP2a, PIP2-1, PIP2a, PIP2.1, OsPIP2;1, PIP2;1, OsPIP2-1
47192	30885140	Xu D., Qu S., Tucker M.R., Zhang D., Liang W., Shi J.	Ostkpr1 functions in anther cuticle development and pollen wall formation in rice.	BMC Plant Biol.	19(1)	104	2019	DFR2 	OsTKPR1, TKPR1, OsDFR2, OS-DFR2, OsDFR2A, DFR2A, OsCCRL1, CCRL1
47193	30775774	Huang J., Wang R., Dai X., Feng J., Zhang H., Zhao P.X.	A microRNA biogenesis-like pathway for producing phased small interfering RNA from a long non-coding RNA in rice.	J. Exp. Bot.	70(6)	1767-1774	2019	SHO1,AGO1C,AGO1A,LHR,AGO1B	sho1, DCL4, OsDCL4, Os DCL4, Dcl4 ,OsAGO1c, OsAGO1, AGO1, AGO1c,OsAGO1a, AGO1a, AGO10, AGO1-1 ,OsLHR,OsAGO1b, AGO1b, AGO1-2 
47194	30517758	Ishimaru T., Parween S., Saito Y., Shigemitsu T., Yamakawa H., Nakazono M., Masumura T., Nishizawa N.K., Kondo M., Sreenivasulu N.	Laser Microdissection-Based Tissue-Specific Transcriptome Analysis Reveals a Novel Regulatory Network of Genes Involved in Heat-Induced Grain Chalk in Rice Endosperm.	Plant Cell Physiol.	60(3)	626-642	2019	BIP1,PDIL2-3,HSP90	OsBiP1, BiP1, BiP, Bip3, OsBiP3, BIP1/OsBIP3, OsMed37_2, Med37_2 ,PDIL2;3, OsPDIL2;3, PDIL 2-3, OsPDIL2-3, OsTrx27, Trx27,OsHsp90, rHSP90, OsHSP90, GRP94, OsGRP94
47195	30517709	Kobayashi W., Liu E., Ishii H., Matsunaga S., Schl?gelhofer P., Kurumizaka H.	Homologous pairing activities of Arabidopsis thaliana RAD51 and DMC1.	J. Biochem.	165(3)	289-295	2019		
47196	31128711	Dong Q., Xu Q., Kong J., Peng X., Zhou W., Chen L., Wu J., Xiang Y., Jiang H., Cheng B.	Overexpression of ZmbZIP22 gene alters endosperm starch content and composition in maize and rice.	Plant Sci.	283	407-415	2019		
47197	30940337	Anunathini P., Manoj V.M., Sarath Padmanabhan TS., Dhivya S., Narayan J.A., Appunu C., Sathishkumar R.	In silico characterisation and functional validation of chilling tolerant divergence 1 (COLD1) gene in monocots during abiotic stress.	Funct. Plant Biol.			2019		
47198	30928635	Ren B., Liu L., Li S., Kuang Y., Wang J., Zhang D., Zhou X., Lin H., Zhou H.	Cas9-NG Greatly Expands the Targeting Scope of the Genome-Editing Toolkit by Recognizing NG and Other Atypical PAMs in Rice.	Mol Plant	12(7)	1015-1026	2019		
47199	30690508	Chiou W.Y., Kawamoto T., Himi E., Rikiishi K., Sugimoto M., Hayashi-Tsugane M., Tsugane K., Maekawa M.	LARGE GRAIN Encodes a Putative RNA-binding protein that Regulates Spikelet Hull Length in Rice.	Plant Cell Physiol.	60(3)	503-515	2019		
47200	30900088	Donde R., Gupta M.K., Gouda G., Kumar J., Vadde R., Sahoo K.K., Dash S.K., Behera L.	Computational characterization of structural and functional roles of DREB1A, DREB1B and DREB1C in enhancing cold tolerance in rice plant.	Amino Acids	51(5)	839-853	2019		
47201	30877435	Chatterjee P., Kanagendran A., Samaddar S., Pazouki L., Sa T.M., Niinemets ?.	Methylobacterium oryzae CBMB20 influences photosynthetic traits, volatile emission and ethylene metabolism in Oryza sativa genotypes grown in salt stress conditions.	Planta	249(6)	1903-1919	2019		
47202	30951093	Eizenga G.C., Jia M.H., Jackson A.K., Boykin D.L., Ali M.L., Shakiba E., Tran N.T., McCouch S.R., Edwards J.D.	Validation of Yield Component Traits Identified by Genome-Wide Association Mapping in a <i>tropical japonica</i> ~ <i>tropical japonica</i> Rice Biparental Mapping Population.	Plant Genome	12(1)		2019		
47203	30911122	Hu B., Jiang Z., Wang W., Qiu Y., Zhang Z., Liu Y., Li A., Gao X., Liu L., Qian Y., Huang X., Yu F., Kang S., Wang Y., Xie J., Cao S., Zhang L., Wang Y., Xie Q., Kopriva S., Chu C.	Nitrate-NRT1.1B-SPX4 cascade integrates nitrogen and phosphorus signalling networks in plants.	Nat Plants	5(4)	401-413	2019	PT3,NRT2.1,PT10,IPS1,PT6,NPF6.5,SPX4,NLP3,PHR2,PT13,PSR1,PT2,PAP10A,PT8,_,NBIP1,PI1,RNS3	OsPT3, PHT1-3, OsPht1;3, OjPT1, PHT1;3,OsNRT2.1, OsNRT2.2,OsPT10, PHT1-10, OsPht1;10,OsIPS1,OsPT6, PHT1-6, OsPht1;6, OsLPT6:1, OsLPT1, OsPT6:1, Pht1;6, LPT6:1, LPT1, PT6:1,OsNRT1.1B, NRT1.1B, OsNPF6.5,OsSPX4, Os-SPX4,OsNLP3,OsPHR2, Os-PHR2,OsPT13, PHT1-13, OsPht1;13, ORYsa;PHT1;13,PSR1, NiR, OsNiR, OsNIR1, NIR1, FD-NiR, OsNiR2,OsPT2, PTH1-2, OsPht1;2, PHT1;2, OsPHT1;2,OsPAP10a, PAP10, OsPAP2, PAP2,OsPT8, PHT1-8, OsPht1;8, Pht1;8, PHT1;8, OsPHT1;8,OsNR1, NR1, nia1, OsNIA1, NIA1, OsNIA2, NIA2,OsNBIP1,  OsRING163, RING163,OsIPS2, IPS2, OsPI1,OsRNS3, OsRNasePD2, RNasePD2
47204	30934889	Yuan J., Yi X., Cao L.	Three-Source Partitioning of Methane Emissions from Paddy Soil: Linkage to Methanogenic Community Structure.	Int J Mol Sci	20(7)		2019		
47205	30871082	Kong W., Zhong H., Gong Z., Fang X., Sun T., Deng X., Li Y.	Meta-Analysis of Salt Stress Transcriptome Responses in Different Rice Genotypes at the Seedling Stage.	Plants (Basel)	8(3)		2019		
47206	30871177	Xu Y., Zou J., Zheng H., Xu M., Zong X., Wang L.	RNA-Seq Transcriptome Analysis of Rice Primary Roots Reveals the Role of Flavonoids in Regulating the Rice Primary Root Growth.	Genes (Basel)	10(3)		2019		
47207	30864196	Cui J., Xia W., Wei S., Zhang M., Wang W., Zeng D., Liu M., Sun Y., Lu W.	Photosynthetic Performance of Rice Seedlings Originated from Seeds Exposed to Spaceflight Conditions.	Photochem. Photobiol.			2019		
47208	30894123	Cao X., Zhu C., Zhong C., Zhang J., Wu L., Jin Q., Ma Q.	Nitric oxide synthase-mediated early nitric oxide burst alleviates water stress-induced oxidative damage in ammonium-supplied rice roots.	BMC Plant Biol.	19(1)	108	2019		
47209	30875867	Yang R., Chen M., Sun J.C., Yu Y., Min D.H., Chen J., Xu Z.S., Zhou Y.B., Ma Y.Z., Zhang X.H.	Genome-Wide Analysis of <i>LIM</i> Family Genes in Foxtail Millet (<i>Setaria italica</i> L.) and Characterization of the Role of <i>SiWLIM2b</i> in drought tolerance.	Int J Mol Sci	20(6)		2019		
47210	30871267	Ni S., Li Z., Ying J., Zhang J., Chen H.	<i>Decreased Spikelets 4</i> Encoding a Novel Tetratricopeptide Repeat Domain-Containing Protein Is Involved in DNA Repair and spikelet number Determination in Rice.	Genes (Basel)	10(3)		2019	CYCA1;1,RAD50,LAX2,MOC1,LAX1,KU80,CYCA3;1,DES4,RAD17,KU70,CYCD2;2,RAD51A2,CYCU4;3,RAD51C	CycA1;1, CycA1;os;1, Orysa;CycA1;1, CYCA2.3, OscycA1;1, CYCA1-1, OsCYCA1-1,Rad50, OsRad50,OsLAX2, Gnp4/LAX2, Gnp4,moc1, OsMOC1, OsGRAS-33, OsGRAS33, GRAS-33, GRAS33, GNP6, OsGNP6,lax, lax(lx), lx, OsbHLH123, bHLH123, OsLAX1, BOS1, OsBOS1,OsKu80, Ku80,CycA3;1, CycA3;os;1, Orysa;CycA3;1, CYCA2.2,OsDES4,OsRAD17,OsKu70, Ku70,CycD2;2, CycD2;os;2, Orysa;CycD2;2, Orysa;CYCD2;2, CyclinD3;1, OsCYCD2;1, OsCYCD3;1, CYCD3;1,OsRad51A2, OsRAD51,CycU4;3, CycU4;os;3, Orysa;CycU4;3, OsCYCP4;1, CyclinD4;1,OsRAD51C, OsRad51C, RAD51C-1, RAD51C-2, RAD51C-3
47211	30837657	Xu X., He P., Pampolino M.F., Qiu S., Zhao S., Zhou W.	Spatial variation of yield response and fertilizer requirements on regional scale for irrigated rice in China.	Sci Rep	9(1)	3589	2019		
47212	30897847	Deng X., An B., Zhong H., Yang J., Kong W., Li Y.	A Novel Insight into Functional Divergence of the MST Gene Family in Rice Based on Comprehensive Expression Patterns.	Genes (Basel)	10(3)		2019	PLT6,XTPH2,MST5,STP21,PLT9,STP15,MST2,MST4,MST6,STP9,STP10,FCO10,STP12,PGLCT,GMST1,PGLCT3,PGLCT4,MST3,PLT13,STP17,STP22,PLT1,PLT3,TMT2,AZT3,TMT1,HWH2,INT3,ERD6,INT2,PLT2,PLT4,PLT8,PLT7,PLT10,PLT15,XTPH1,MST1,STP14,STP19,STP26,MST8,PLT12,INT1,ERD4,STP16,ERD5,STP18,ERD3,ERD1,AZT6,STP23,MST7,PLT5,STP25,AZT2,PLT11,STP27,STP28,ERD2,STP11,STP20,STP24,PLT14	OsPLT6,OsXTPH2,OsMST5, OsSTP5, STP5,OsSTP21,OsPLT9,OsSTP15,OsMST2, OsSTP2, STP2,OsMST4, OsSTP4, STP4,OsMST6, STP6, OsSTP6,OsSTP9,OsSTP10,OsFCO10, OsSTP13, STP13,OsSTP12,OsPGLCT, OspGlcT1, pGlcT1,OsGMST1, OspGlcT2, pGlcT2,OspGlcT3, pGlcT3,OspGlcT4, pGlcT4,OsMST3, OsSTP3, STP3,OsPLT13,OsSTP17,OsSTP22,OsPLT1,OsPLT3,OsTMT2, AZT1, OsAZT1,OsAZT3,OsTMT1, OsAZT4, AZT4,OsHWH2, AZT5, OsAZT5,OsINT3,OsERD6,OsINT2,OsPLT2,OsPLT4,OsPLT8,OsPLT7,OsPLT10,OsPLT15,OsXTPH1,OsMST1, OsSTP1, STP1,OsSTP14,OsSTP19,OsSTP26,OsMST8, OSMST8, OsSTP8, STP8,OsPLT12,OsINT1,OsERD4,OsSTP16,OsERD5,OsSTP18,OsERD3,OsERD1,OsAZT6,OsSTP23,OsMST7, OSMST7, OsSTP7, STP7,OsPLT5,OsSTP14, STP14, OsSTP25,OsAZT2,OsPLT11,OsSTP27,OsSTP28,OsERD2,OsSTP11,OsSTP20,OsSTP24,OsPLT14
47213	30944805	Pathak B., Zhao S., Manoharan M., Srivastava V.	Dual-targeting by CRISPR/Cas9 leads to efficient point mutagenesis but only rare targeted deletions in the rice genome.	3 Biotech	9(4)	158	2019		
47214	30890139	Wang H., Zhu S., Dang X., Liu E., Hu X., Eltahawy M.S., Zaid I.U., Hong D.	Favorable alleles mining for gelatinization temperature, gel consistency and amylose content in Oryza sativa by association mapping.	BMC Genet.	20(1)	34	2019		
47215	30935059	Singh P., Mathew I.E., Verma A., Tyagi A.K., Agarwal P.	Analysis of Rice Proteins with DLN repressor Motif/S.	Int J Mol Sci	20(7)		2019	ERF3,ERF132,DLN208,DLN54,SPL15,GATA8,_,DLN74,DLN34,_,DLN45,MADS55,DLN260,DLN168,DLN35,DLN127,DLN67,DLN187,DDM1B,CUC1,DST,DLN87,SL1,DLN145,DLN136,DLN55,DLN29,IAA10,TIL1,DLN147,JMJ702,DLN26,DLN198,DLN63,MBD710,DLN235,SIZ1,DLN244,DLN17,_,NAC3,SPL1,DLN118,WRKY26,DLN166,ARF14,DLN251,ARF3,NAC20,DLN38,NAC124,NAC13,DLN242,WRKY28,DLN212,DLN199,DLN238,DLN83,GRAS26,DLN43,DLN109,DLN81,DLN78,C3H11,DLN210,DLN196,DLN178,DLN254,DLN9,DLN62,C3H13 ,CCA1,DLN122,DLN92,DLN207,IAA16,MADS88,DLN193,DLN3,DLN164,DLN258,DLN94,DLN261,MADS22,ONAC300,E2F2,DLN200,DLN169,DLN129,_,Y37,SPL6,ARF7B,NAC104,BZIP39,PINE1,DLN197,DLN177,MADS2,GL1A,MP,ERF11,DLN66,_,MADS37,DLN142,_,DLN13,DLN139,DLN162,DLN191,NAC60,EHD4,CUC3,C3H28,MSL13,GD1,NAC45,SNB,ERF77,DLN232,NAC29,SHR1,DLN249,DLN32,LHS1,DLN115,MADS51,FBOX58,ALT1,MYB45,DLN56,RDD1,ERF8,DLN108,DLN262,NAM,HSFA3,DLN173,CBT,IEZ1,DLN39,DLN204,DU13,_,DOF18,_,BSRD1,C3H7,_,_,_,RSR1,AGP30,MYB3R2,_,ZFP179,ZFP245,MSL40,DLN224,C3H34,CCT10,NH1,ERF109,_,MADS64,DDM1A,_,C3H65,DLN231,NAC6,DLN156,DLN194,NAC72,JMJ707,HIRP1,C3H50,NH2,_,_,DLN89,NAC7,SIR2B,DLN31,EBP-89,HUB2,GN8.1,IAA7,DLN160,NAC21,IDS1,NAC43,_,_,WRKY117,ZFP252,DLN144,DLN101,GRAS17,WRKY6,_,DLN107,DLN226,SPL12,SHAT1,ERF134,NAC84,BZIP71,DLN97,GRAS56,ETT2,E2F3,_,WRKY123,ERF69,DLN143,SET33,DLN4,GRAS45,BZIP42,E2F1,_,MYB1,DLN61,DLN24,MFS1,DLN52,DLN202,_,DLN135,DLN182,_,DLN239,_,NAC26,CMF11,_,NAC1,OSKAPP,NAC90,ERF76,_,ERF121,EAT1,DLN248,ETT1,_,DLN70,MSL37,DLN105,ERF7,IDD12,DRZ1,BZIP76,DLN146,ERF74,DLN15,DLN114,ERF119,DLN85,AID1,MADS4,DRAP2,MSL05	AP37, OsAP37, OsERF3, OsERF#075, OsERF075, OsERF75, ERF75, AP2/EREBP#004, AP2/EREBP4, OsBIERF2, BIERF2, DLN23, OsDLN23,OsERF#132, OsERF132, AP2/EREBP#010, AP2/EREBP10, DLN41, OsDLN41,OsDLN208,OsDLN54,OsSPL15, DLN215, OsDLN215,OsGATA8, OsGATA14, GATA14, OsGATA8a, OsGATA8b, DLN10, OsDLN10,OsbHLH129, bHLH129, OsRSL4, RSL4, DLN79, OsDLN79,OsDLN74,OsDLN34,OsbHLH149, bHLH149, DLN30, OsDLN30, OsMYC4, MYC4,OsDLN45,OsMADS55, DLN163, OsDLN163,OsDLN260,OsDLN168,OsDLN35,  OsRING210, RING210,OsDLN127,OsDLN67,OsDLN187,OsDDM1b, DDM1b, DDM1, DLN98, OsDLN98, CHR741, OsCHR741,ONAC039, ONAC39, NAC39, OsCUC1, DLN86, OsDLN86,OsDST, DLN102, OsDLN102, HST1, OsHST1,OsDLN87,sl1(t), sl1, stl1, opb, OPB1, ps, PS, OPB, DLN2, OsDLN2, OsJAG, JAG, OsJAG.1, OsJAG.2, ZOS1-02, OsZOS1-02,OsDLN145,OsDLN136,OsDLN55, OsDLN55a, OsDLN55b, DLN55a, DLN55b,OsDLN29, Os2R_MYB17, 2R_MYB17 ,OsIAA10, OsIAA5, DLN71, OsDLN71,NAC2, OsNAC2, ONAC004, ONAC4, ONAC034, ONAC34, ONAC058, ONAC58, OMTN2, Ostil1, OsNAC2/ONAC004, OsORE1.2, DLN113, OsDLN113,OsDLN147, OsDLN147a, OsDLN147b, DLN147a, DLN147b,OsJMJ702, DLN257, OsDLN257,OsDLN26,OsRFP, OsDLN198, OsPHD30, PHD30,  OsRING82, RING82,OsDLN63,OsDLN48, DLN48, OsMBD710, OsDLN47, DLN47, OsBrdST2, BrdST2,OsDLN235,OsSIZ1, OsSIZ1.1, OsSIZ1.2, OsSIZ1.3, DLN131, OsDLN131, OsPHD23, PHD23,OsDLN244,OsDLN17,OsSIRP1, SIRP1, DLN148, OsDLN148,  OsRING219, RING219,OsNAC3, NAC67, ONAC067, OnNAC3*, OsNAC3/ONAC067, DLN180, OsDLN180,OsSPL1, DLN8, OsDLN8, DLN8a, DLN8b, OsDLN8a, OsDLN8b,OsDLN118,OsWRKY26, OsWRKY59, DLN19, OsDLN19,OsDLN166,OsARF14, OsETT4, ETT4, DLN153, OsDLN153, OsARF3la, ARF3la,OsDLN251,OsARF3, ETT3, Os ETT3, OsETT3, DLN20, OsDLN20, ARF4, OsARF3lb, ARF3lb,ONAC020, ONAC20, DLN1, OsDLN1,OsDLN38, OsFYVE03, OsFYVE3, FYVE03, FYVE3,ONAC124, DLN245, OsDLN245,ONAC013, ONAC13, ONAC064, ONA064, DLN53, OsDLN53,OsDLN242, OsDLN242a, OsDLN242b, DLN242a, DLN242b,OsWRKY28, DLN170, OsDLN170,OsDLN212,OsDLN199,OsDLN238,OsDLN83, OsPHD15, PHD15,OsGRAS-26, OsGRAS26, GRAS-26, DLN137, OsDLN137, OsGRAS23, GRAS23 ,OsDLN43, CHR701, OsCHR701,OsDLN109,  OsRING375, RING375,OsDLN81,OsDLN78,OsC3H11, DLN25, OsDLN25,OsDLN210,OsDLN196,OsDLN178,R2R3-MYB, OsDLN254, OsMYB2, Os2R_MYB94, 2R_MYB94,OsDLN9,OsDLN62,OsC3H13, BIP105, DLN42, DLN42a, DLN42b, OsDLN42, OsDLN42a, OsDLN42b,OsCCA1, OsLHY, LHY, LHY-like_chr.8, COC1, DLN203, OsDLN203, LEM1, OsLEM1, Nhd1, OsNhd1,OsDLN122,  OsRING423, RING423,OsDLN92,OsDLN207,OsIAA16, DLN134, OsDLN134,OsMADS88, DLN7, OsDLN7,OsDLN193,OsDLN3, OsPHD4, PHD4,OsDLN164,OsDLN258, OsPHD44, PHD44,OsDLN94,OsDLN261, OsDLN261a, OsDLN261b, DLN261a, DLN261b,OsMADS22, RMD1, DLN68, OsDLN68,ONAC077, NAC77, OsNAC77, NAC300, OsNAC300, ONAC132, NAC132, OsNAC132, DLN250, OsDLN250,Orysa;E2F2, OsE2F2, DLN252, OsDLN252, OsE2Fa-2, E2Fa-2,OsDLN200,  OsRING15, RING15,OsDLN169,OsDLN129,OsbHLH134, bHLH134, DLN100, OsDLN100,NAC11, ONAC011, ONAC11, OMTN4, OsY37, OsY37N, OsY37I, OsNAC1, DLN172, OsDLN172, OsNAC092, NAC092, OsNAC92, NAC92,OsSPL6, DLN106, DLN106a, DLN106b, OsDLN106, OsDLN106a, OsDLN106b,OsARF7b, OsARF21, DLN216, OsDLN216,OMTN6, ONAC104, DLN206, OsDLN206,OsbZIP39, bZIP39, DLN138, OsDLN138,OsPINE1, DLN266, OsDLN266, DEC1, OsDEC1,OsDLN197,OsDLN177,OsMADS2, RMADS219, NMADS1, PI2, nmads1, DLN33, OsDLN33,R2R3-MYB, OsGL1A, DLN218, OsDLN218, OsMYB102, MYB102, Os2R_MYB81, 2R_MYB81 ,OsMP, OsARF5, OsARF11, DLN125, OsDLN125, OsMP/OsARF11,OsERF#011, OsERF011, OsERF11, OsDERF9, DERF9, AP2/EREBP#083, AP2/EREBP83, DLN69, OsDLN69, ERF17_Ath,OsDLN66,DLN40, OsDLN40,OsMADS37, DLN217, OsDLN217,OsDLN142,OsbHLH128, bHLH128, OsRSL6, RSL6, DLN190, OsDLN190,OsDLN13,OsDLN139,  OsRING386, RING386,OsDLN162, OsDLN162a, OsDLN162b, DLN162a, ODLN162b,OsDLN191,ONAC060, ONAC60, OMTN3, OsNAC60, DLN265, OsDLN265,OsC3H20, C3H20, Ehd4, DLN73, DLN73a, DLN73b, OsDLN73, OsDLN73a, OsDLN73b,OsCUC3, ONAC107, NAC107, DLN214, OsDLN214,OsC3H28, DLN112, DLN112a, DLN112b, OsDLN112, OsDLN112a, OsDLN112b,OsMSL13, DLN59, OsDLN59, OsGTgamma-1, GTgamma-1,OsGD1, OsVAL1, VAL1, DLN186, OsDLN186,ONAC045, ONAC45, DLN243, OsDLN243, OsNAM, NAM,AP2/EREBP#073, AP2/EREBP73, AP2-3, OsAP2-3, SSH1, OsSSH1, OsSNB, DLN181, DLN181a, DLN181b, OsDLN181, OsDLN181a, OsDLN181b, SUI4, OsSUI4, SUI4/SNB,OsAP2-39, AP2-39, OsERF#077, OsERF077, OsERF77, AP2/EREBP#149, AP2/EREBP149, DLN121, OsDLN121,OsDLN232, OsDHHC24, DHHC24,ONAC029, ONAC29, OsSWN2, OsSWN2L, OsSWN2S, OsNST1/2, SWN2, SWN2L, SWN2S, NST1/2, DLN201, OsDLN201,OsSHR1, OsGRAS-38, OsGRAS38, GRAS-38, GRAS38, DLN189, OsDLN189, OsSHR, SHR,OsDLN249, OsDHHC27, DHHC27,CHR703, OsDLN32, OsCHR703,OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO, OsLHS1, OsLG3b, LG3b, qLGY3, LGY3, DLN80, OsDLN80, OLR, OsOLR, GW3p6, OsGW3p6, OsMADS1GW3p6, MADS1GW3p6, qLGY3/OsLG3b/GW3p6,OsRFP, OsDLN115,  OsRING354, RING354,OsMADS51, OsMADS65, MADS65, qHd1, DLN36, OsDLN36,OsFbox058, OsFbox58, Os_F0591, DLN37, OsDLN37, CHR707, OsCHR707,  OsFBO7, FBO7,OsDLN22, DLN22, CHR706, OsCHR706, OsALT1,  OsRING431, RING431,OsMPH1, MPH1, OsMYB45, DLN171, OsDLN171, OsMYB-R1, MYB-R1, CRPG17, OsCRPG17,OsDLN56, CHR710, OsCHR710,  OsRING283, RING283,OsDof2, OsDof9, Dof9, OsDof-9, DLN64, OsDLN64, OsDof8, Dof8,OsERF#008, OsERF008, OsERF8, AP2/EREBP#128, AP2/EREBP128, DLN123, OsDLN123,OsRFP, OsDLN108, UCIP3, OsUCIP3,  OsRING214, RING214,OsDLN262,OsNAM, OMTN5, ONAC092, ONAC92, NAC92, CUC2, OsNAM/CUC2, DLN165, OsDLN165, OsCUC1, CUC1, OsNAM/ OMTN5, OsNAM1, NAM1,HSfA3, OsHsfA3, OsHsf-07, HSF07, OsHSF7, HSF7, DLN57, OsDLN57,OsDLN173,OsCBT, DLN185, OsDLN185, OsCAMTA5, CAMTA5,OsiEZ1, OsSET1, SET1, iEZ1, OsEZ1/OsiEZ1, OsEZ1, EZ1, ez1, OsSET15, SDG718, DLN84, OsDLN84,CHR744, OsCHR744, OsDLN39,OsDLN204,  OsRING391, RING391,OsDLN175, DLN175, OsSE, SE, OsDU13, ZOS6-09, OsZOS6-09,OsBBX29, OsDBB1, BBX29, DBB1, DLN230, OsDLN230,OsDof18, Dof18, OsDof-18, DLN119, OsDLN119, OsDof17, Dof17,OsSET30, SDG710, OsSUVH10, DLN209, OsDLN209,ZFP36, OsZFP36, OsBSRD1, Bsr-d1, BSR-D1, DLN91, OsDLN91,OsC3H7, DLN12, OsDLN12, OsCPSF30-L2, CPSF30-L2,JMJ711, OsFbox149, Os_F0347, DLN88, OsDLN88,  OsFBO14, FBO14,OsMB44, MB44, DLN237, OsDLN237,  OsMBTB60, MBTB60,ONAC007, ONAC7, OsSND1, SND1, OsSWN1, SWN1, DLN157, OsDLN157,AP2/EREBP#090, AP2/EREBP90, OsTOE1, TOE1, qHD5, AP2-1, AP2/EREBP/RSR1, OsRSR1, DLN130, DLN130a, DLN130b, OsDLN130, OsDLN130a, OsDLN130b,OsAGP30, DLN50, OsDLN50,OsMYB3R-2, OsMYB3R2, OsMSL07, MSL07, MSL7, DLN28, OsDLN28,OsGATA21, GATA21, OsGATA21a, OsGATA21b, DLN117, OSDLN117,OsZFP179, DLN27, OsDLN27,OsZFP245, DLN192, OsDLN192, ZOS7-08, OsZOS7-08,OsMSL40, DLN253, OsDLN253, OsGTgamma-3, GTgamma-3,OsDLN224,OsC3H34, DLN132, OsDLN132,OsCCT10, OsCMF4, CMF4, DLN75, OsDLN75,OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2, DLN5, OsDLN5,  OsBTBA1, BTBA1,OsERF#109, OsERF109, AP2/EREBP#063, AP2/EREBP63, DLN223, OsDLN223,WZF1, OsWZF1, DLN99, OsDLN99, OsZFP1, ZFP1,OsMADS64, DLN110, OsDLN110,OsDDM1a, DDM1a, DLN225, OsDLN225, CHR746, OsCHR746,OsbHLH130, bHLH130, OsRSL9, RSL9, DLN264, OsDLN264,OsC3H65, DLN256, OsDLN256,R2R3-MYB, OsDLN231, OsMYB108, MYB108, OsMYB31, MYB31, Os2R_MYB86, Os2R_MYB86, 2R_MYB86 ,ONAC006, ONAC6, DLN95, OsDLN95,R2R3-MYB, OsDLN156, Os2R_MYB62, 2R_MYB62 ,OsDLN194,ONAC072, ONAC72, DLN228, OsDLN228,OsJMJ707, DLN65, OsDLN65,OsRFP, OsHIRP1, DLN82, OsDLN82, OsPHD14, PHD14,  OsRING365, RING365,OsC3H50, OsTZF6, OsCCCH-Zn-6, DLN188, OsDLN188,OsNH2, OsNPR2, NPR2, OsNPR2/NH2, DLN21, OsDLN21, PR2, OsNPR1, NPR1,  OsBTBA2, BTBA2, OsNPR3, NPR3,OsSTA83, DLN72, OsDLN72,OsRFPH2-5, DLN133, OsDLN133,  OsRING36, RING36,OsDLN89,OsNAC7, ONAC076, NAC76, OsNAC7/ONAC093, ONAC093, ONAC93, NAC93, DLN167, OsDLN167,Sir2, OsSIR2b, OsSir2b, OsSRT2, SRT2, DLN255, OsDLN255, OsSRT702, SRT702,R2R3-MYB, OsDLN31, MYB3, OsMYB22, MYB22, Os2R_MYB18, 2R_MYB18 ,OsEBP-89, ebp-89, OsERF#060, OsERF060, OsERF60, ERF60, AP2/EREBP#027, AP2/EREBP27, OsEBP89, DLN76, OsDLN76,OsHUB2, FRRP1, DLN241, OsDLN241,  OsRING378, RING378,OsFBH1, OsbHLH112, DLN213, OsDLN213, Gn8.1, OsGn8.1,OsIAA7, DLN51, OsDLN51,OsDLN160,ONAC021, ONAC21, DLN220, OsDLN220,OsIDS1, AP2/EREBP#033, AP2/EREBP33, AP2-33/IDS1, AP2-33, AP2-2, DLN104, OsDLN104,ONAC043, ONAC43, DLN44, OsDLN44,OsbHLH008, bHLH008, OsMYL2, MYL2, DLN6, OsDLN6, OsMYC1, MYC1,OsSET25, SDG726, OsSUVH2, DLN184, OsDLN184, HKMTs,OsWRKY117, DLN205, OsDLN205,RZF71, DLN263, OsDLN263,OsDLN144,OsDLN101,OsSCL14, SCL14, OsGRAS-17, OsGRAS17, GRAS-17, DLN96, OsDLN96, OsGRAS15, GRAS15 ,OsWRKY6, WRKY-6, DLN103, OsDLN103,OsVAL2, VAL2, DLN195, OsDLN195,OsDLN107, WACH1, OsWACH1,OsDLN226, OsDLN226a, OsDLN226b, DLN226a, DLN226b,OsSPL12, DLN176, OsDLN176,OsSHAT1, AP2/EREBP#043, AP2/EREBP43, AP2-5, DLN124, OsDLN124, ObSHAT1, OgSHAT1, OrSHAT1 ,OsERF#134, OsERF134, AP2/EREBP#011, AP2/EREBP11, DLN46, OsDLN46,ONAC084, ONAC84, DLN128, OsDLN128,OsbZIP71, DLN221, OsDLN221, DLN222, OsDLN222,OsDLN97, OsGeBP7, GeBP7,OsGRAS-56, OsGRAS56, GRAS-56, DLN259, OsDLN259, OsGRAS53, GRAS53,OsARF2, ARF2, OsETT2, ARF3a, OsARF3a, DLN16, OsDLN16, ARF3,Orysa;E2F3, OsE2F3, DLN111, OsDLN111,OsRFPHC-12, RFPHC-12, DLN116, OsDLN116,  OsRING385, RING385,OsWRKY123, DLN183, OsDLN183,OsERF#069, OsERF069, OsERF69, AP2/EREBP#028, AP2/EREBP28, DLN77, OsDLN77, HINGE5, OsHINGE5,OsDLN143, OsMYB3R2-L, MYB3R2-L,OsSET33, OsSDG723, SDG723, OsTrx1, Trx1, OsTrx1/SDG723, DLN219, OsDLN219,OsDLN4,OsGRAS-45, OsGRAS45, GRAS-45, DLN246, OsDLN246, OsGRAS41, GRAS41 ,OsbZIP42, OsABF7, ABF7, HBF1, DLN149, OsDLN149,Orysa;E2F1, OsE2F1, DLN58, OsDLN58, OsE2Fa-1, E2Fa-1,OsMB20, MB20, OsMB20a, OsMB20b, DLN234, OsDLN234,  OsMBTB47, MBTB47,OsMyb1, OSMYB1, R2R3-MYB, OsDLN141, DLN141, Os2R_MYB55, 2R_MYB55 ,OsDLN61,OsRFP, OsDLN24,  OsRING179, RING179,ERF130, OsERF#130, OsERF130, AP2/EREBP#165, AP2/EREBP165, DLN151, OsDLN151,OsDLN52,OsDLN202,  OsRING17, RING17,OsbHLH085, DLN227, OsDLN227,OsDLN135,OsDLN182, Os2R_MYB68, 2R_MYB68,OsMB49, MB49, DLN233, OsDLN233,OsDLN239,OsWD40-18, WD40-18, LUG, DLN14, OsDLN14,ONAC026, ONAC26, OsEnS-8, DLN11, OsDLN11,OsCCT35, CCT35, OsCMF11, OsH, DLN240, OsDLN240,OsMB38, MB38, DLN236, OsDLN236,  OsMBTB55, MBTB55,OsNAC1, ONAC027, ONAC27, NAC27, OMTN1, OsNAC1/ONAC027, DLN60, OsDLN60, OsORE1,OsKAPP, OsPP94, DLN179, OsDLN179,OsSWN7, SWN7, ONAC090, ONAC90, VND6, VND4/5/6, OsVND6, OsVND4/5/6, DLN155, OsDLN155,OsERF#076, OsERF076, OsERF76, AP2/EREBP#046, AP2/EREBP46, DLN126, OsDLN126,OsCHB702, CHB702, DLN49, OsDLN49,OsERF#121, OsERF121, AP2/EREBP#061, AP2/EREBP61, DLN174, OsDLN174,OsEAT1, OsbHLH141, EAT1/DTD1, bHLH141, DTD1, DTD, DLN120, OsDLN120,OsDLN248,OsARF15, ARF15, OsETT1, ARF3b, OsARF3b, OsARF3-1, ARF3-1, OsARF3, ARF3, DLN154, OsDLN154,OsbHLH131, bHLH131, OsRSL5, RSL5, DLN93, OsDLN93,OsDLN70,OsMSL37, DLN247, OsDLN247, OsGTgamma-2, GTgamma-2,OsDLN105,OsERF#007, OsERF007, OsERF7, AP2/EREBP#142, AP2/EREBP142, DLN158, OsDLN158,OsIDD12, DLN211, OsDLN211,OsDRZ1, DLN90, OsDLN90,OsbZIP76, DLN229, OsDLN229,OsRFP, OsDLN146,  OsRING180, RING180,OsERF#074, OsERF074, OsERF74, AP2/EREBP#051, AP2/EREBP51, DLN152, OsDLN152,OsDLN15,OsDLN114,OsERF#119, OsERF119, AP2/EREBP#104, AP2/EREBP104, DLN161, OsDLN161,OsDLN85, OsDLN85a, OsDLN85b, DLN85a, DLN85b,aid1, OsAID1, DLN159, OsDLN159,OsMADS4, PI1, DLN140, OsDLN140,OsDrAp2, DrAp2, OsHAPL1, HAPL1, DLN150, OsDLN150,OsMSL05, MSL5, DLN18, OsDLN18
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47217	30900100	Fei C., Geng X., Xu Z., Xu Q.	Multiple areas investigation reveals the genes related to vascular bundles in rice.	Rice (N Y)	12(1)	17	2019		
47218	30508149	Chen L., Huang L., Dai L., Gao Y., Zou W., Lu X., Wang C., Zhang G., Ren D., Hu J., Shen L., Dong G., Gao Z., Chen G., Xue D., Guo L., Xing Y., Qian Q., Zhu L., Zeng D.	PALE-GREEN LEAF12 Encodes a Novel Pentatricopeptide Repeat Protein Required for Chloroplast Development and 16S rRNA Processing in Rice.	Plant Cell Physiol.	60(3)	587-598	2019		
47219	30928637	Zhong Z., Sretenovic S., Ren Q., Yang L., Bao Y., Qi C., Yuan M., He Y., Liu S., Liu X., Wang J., Huang L., Wang Y., Baby D., Wang D., Zhang T., Qi Y., Zhang Y.	Improving Plant Genome Editing with High-Fidelity xCas9 and Non-canonical PAM-Targeting Cas9-NG.	Mol Plant	12(7)	1027-1036	2019		
47220	30860317	Teng X., Zhong M., Zhu X., Wang C., Ren Y., Wang Y., Zhang H., Jiang L., Wang D., Hao Y., Wu M., Zhu J., Zhang X., Guo X., Wang Y., Wan J.	FLOURY ENDOSPERM16 encoding a NAD-dependent cytosolic malate dehydrogenase plays an important role in starch synthesis and seed development in rice.	Plant Biotechnol. J.	17(10)	1914-1927	2019	FLO16	CMDH, OscMDH, cMDH, OsMDH, MDH, OsFLO16, OsMDH10.1, MDH10.1, OsLdh11, Ldh11
47221	30886215	Chen K., Zhang Q., Wang C.C., Liu Z.X., Jiang Y.J., Zhai L.Y., Zheng T.Q., Xu J.L., Li Z.K.	Genetic dissection of seedling vigour in a diverse panel from the 3,000 Rice (Oryza sativa L.) Genome Project.	Sci Rep	9(1)	4804	2019		
47222	30911876	Takahashi K., Kohno H., Kanabayashi T., Okuda M.	Glutelin subtype-dependent protein localization in rice grain evidenced by immunodetection analyses.	Plant Mol. Biol.	100(3)	231-246	2019	GLUA2,GLUD1,GLUC,GLUB4,GLUB1	Glua2*, Glua2, GLUA-2, GluA-2, Glu20, GluA2, OsEnS-137,GluD1, GluD-1, OsGluD-1, OsEnS-33, EnS-33, GluD,GluC, OsEnS-36, EnS-36, GLU2.2, GluC-1, OsGluC-1,GluB4, GluB-4, GluB-5, GluB5, GluB-4/5,GluB1, GluB1-A, GluB-1a, GluB-1, OsGluB1, GluB-1b, OsGluB-1b, GLUB1B
47223	30918284	Phule A.S., Barbadikar K.M., Maganti S.M., Seguttuvel P., Subrahmanyam D., Babu MBBP., Kumar P.A.	RNA-seq reveals the involvement of key genes for aerobic adaptation in rice.	Sci Rep	9(1)	5235	2019	SWEET3A,RAP1A,MDR17,MFO1,NL1,_,GLK1,PT6,MADS5,MADS7,MADS4	OsSWEET3a, SWEET3a,OsMADS15, FDRMADS3, RMADS215, MADS15, DEP,OsABCB7, ABCB7, OsPGP7, OsMDR17,OsMADS6, MADS6, OsMFO1,OsVTL2, VTL2, OsNL1,OsTPR,OsGLK1, OsGlk1, GLK1,OsPT6, PHT1-6, OsPht1;6, OsLPT6:1, OsLPT1, OsPT6:1, Pht1;6, LPT6:1, LPT1, PT6:1,OsMADS5, FDRMADS2,OsMADS7, OsMADS45, FDRMADS1, RMADS216, AGL6, M79, MADS45, Os MADS7, Os MADS45, OsMADS7/45,OsMADS4, PI1, DLN140, OsDLN140
47224	30476313	Itoh H., Tanaka Y., Izawa T.	Genetic Relationship Between Phytochromes and OsELF3-1 Reveals the Mode of Regulation for the Suppression of Phytochrome Signaling in Rice.	Plant Cell Physiol.	60(3)	549-561	2019		
47225	30911779	Fujino K., Hirayama Y., Obara M., Ikegaya T.	Introgression of the chromosomal region with the Pi-cd locus from Oryza meridionalis into O. sativa L. during rice domestication.	Theor. Appl. Genet.	132(7)	1981-1990	2019		
47226	30788843	Baral A.	Lazy rice in space: gravity regulates helical movement in plants.	Physiol Plant	165(3)	448-450	2019		
47227	30842474	Yang X., Wang B., Chen L., Li P., Cao C.	The different influences of drought stress at the flowering stage on rice physiological traits, grain yield, and quality.	Sci Rep	9(1)	3742	2019		
47228	30886437	Li S., Li J., He Y., Xu M., Zhang J., Du W., Zhao Y., Xia L.	Precise gene replacement in rice by RNA transcript-templated homologous recombination.	Nat. Biotechnol.	37(4)	445-450	2019		
47229	30856414	Rizwan M., Mostofa M.G., Ahmad M.Z., Zhou Y., Adeel M., Mehmood S., Ahmad M.A., Javed R., Imtiaz M., Aziz O., Ikram M., Tu S., Liu Y.	Hydrogen sulfide enhances rice tolerance to nickel through the prevention of chloroplast damage and the improvement of nitrogen metabolism under excessive nickel.	Plant Physiol. Biochem.	138	100-111	2019		
47230	30842619	Wang C., Tariq R., Ji Z., Wei Z., Zheng K., Mishra R., Zhao K.	Transcriptome analysis of a rice cultivar reveals the differentially expressed genes in response to wild and mutant strains of Xanthomonas oryzae pv. oryzae.	Sci Rep	9(1)	3757	2019		
47231	30863709	Ilyas M., Akhtar W., Rehman S., Naqvi S.M.S., Mahmood T.	Functional characterization of the rice root germin-like protein gene-1 (<i>Os</i>RGLP1) promoter in <i>Nicotiana tabacum</i>.	3 Biotech	9(4)	130	2019		
47232	30928636	Hua K., Tao X., Han P., Wang R., Zhu J.K.	Genome Engineering in Rice Using Cas9 Variants that Recognize NG PAM Sequences.	Mol Plant	12(7)	1003-1014	2019		
47233	30913440	Long J., Tan D., Deng S., Li B., Ding D., Lei M.	Antimony accumulation and iron plaque formation at different growth stages of rice (Oryza sativa L.).	Environ. Pollut.	249	414-422	2019		
47234	30802973	Nghi K.N., Tondelli A., Val? G., Tagliani A., Mar? C., Perata P., Pucciariello C.	Dissection of coleoptile elongation in japonica rice under submergence through integrated genome-wide association mapping and transcriptional analyses.	Plant Cell Environ.	42(6)	1832-1846	2019		
47235	30753656	Wang Y., Hou J., Liu H., Li T., Wang K., Hao C., Liu H., Zhang X.	TaBT1, affecting starch synthesis and thousand kernel weight, underwent strong selection during wheat improvement.	J. Exp. Bot.	70(5)	1497-1511	2019		
47236	30901838	Liu X., Li Z., Hou Y., Wang Y., Wang H., Tong X., Ao H., Zhang J.	Protein Interactomic Analysis of SAPKs and ABA-Inducible bZIPs Revealed Key Roles of SAPK10 in Rice Flowering.	Int J Mol Sci	20(6)		2019		
47237	30867535	Du B., Luo H., He L., Zhang L., Liu Y., Mo Z., Pan S., Tian H., Duan M., Tang X.	Rice seed priming with sodium selenate: Effects on germination, seedling growth, and biochemical attributes.	Sci Rep	9(1)	4311	2019		
47238	30911786	Wang J., Chapman S.J., Ye Q., Yao H.	Limited effect of planting transgenic rice on the soil microbiome studied by continuous 13CO2 labeling combined with high-throughput sequencing.	Appl. Microbiol. Biotechnol.	103(10)	4217-4227	2019		
47239	30911847	Fang N., Wei X., Shen L., Yu Y., Li M., Yin C., He W., Guan C., Chen H., Zhang H., Bao Y.	Fine mapping of a panicle blast resistance gene Pb-bd1 in Japonica landrace Bodao and its application in rice breeding.	Rice (N Y)	12(1)	18	2019		
47240	30834537	Hamdani S., Wang H., Zheng G., Perveen S., Qu M., Khan N., Khan W., Jiang J., Li M., Liu X., Zhu X., Govindjee, Chu C., Zhu X.G.	Genome-wide association study identifies variation of glucosidase being linked to natural variation of the maximal quantum yield of photosystem II.	Physiol Plant	166(1)	105-119	2019		
47241	30863959	Li G., Jin J., Zhou Y., Bai X., Mao D., Tan C., Wang G., Ouyang Y.	Genome-wide dissection of segregation distortion using multiple inter-subspecific crosses in rice.	Sci China Life Sci	62(4)	507-516	2019		
47242	30843129	Poudel S.B., Min C.K., Lee J.H., Shin Y.J., Kwon T.H., Jeon Y.M., Lee J.C.	Local supplementation with plant-derived recombinant human FGF2 protein enhances bone formation in critical-sized calvarial defects.	J. Bone Miner. Metab.	37(5)	900-912	2019		
47243	31372410	Najafi E., Pal I., Khanbilvardi R.	Data of variability and joint variability of global crop yields and their association with climate.	Data Brief	23	103745	2019		
47244	30328779	Okuda M., Shiba T., Hirae M., Masunaka A., Takeshita M.	Analysis of Symptom Development in Relation to Quantity of Rice stripe virus in Rice (Oryza sativa) to Simplify Evaluation of Resistance.	Phytopathology	109(4)	701-707	2019		
47245	30842645	Matsushima R., Hisano H.	Imaging Amyloplasts in the Developing Endosperm of Barley and Rice.	Sci Rep	9(1)	3745	2019		
47246	30935009	Zeng R., Farooq M.U., Wang L., Su Y., Zheng T., Ye X., Jia X., Zhu J.	Study on Differential Protein Expression in Natural Selenium-Enriched and Non-Selenium-Enriched Rice Based on iTRAQ Quantitative Proteomics.	Biomolecules	9(4)		2019		
47247	30911123	Toda E., Koiso N., Takebayashi A., Ichikawa M., Kiba T., Osakabe K., Osakabe Y., Sakakibara H., Kato N., Okamoto T.	An efficient DNA- and selectable-marker-free genome-editing system using zygotes in rice.	Nat Plants	5(4)	363-368	2019		
47248	30933762	Xu X., Yan M., Liang L., Lu Q., Han J., Liu L., Feng X., Guo J., Wang Y., Qiu G.	Impacts of selenium supplementation on soil mercury speciation, and inorganic mercury and methylmercury uptake in rice (Oryza sativa L.).	Environ. Pollut.	249	647-654	2019		
47249	30896372	Gouda G., Gupta M.K., Donde R., Kumar J., Vadde R., Mohapatra T., Behera L.	Computational approach towards understanding structural and functional role of Cytokinin oxidase/dehydrogenase 2 (CKX2) in enhancing grain yield in rice plant.	J. Biomol. Struct. Dyn.		1-10	2019		
47250	30887096	Cui Y., Zhu M., Xu Z., Xu Q.	Assessment of the effect of ten heading time genes on reproductive transition and yield components in rice using a CRISPR/Cas9 system.	Theor. Appl. Genet.	132(6)	1887-1896	2019	GHD7,HD5,HD3B,EF1,SE14,SE1,SE13,HD3A,RFT1,PHYB	Ghd2, Ghd7, OsGhd7, OsCCT26, OsCMF8, OsI, Ghd7/Hd4, Hd4, EH7-1/Hd4, Ghd7-0a, EH7-1, EH7/Ghd7, EH7, OsEH7, GLW7.1, OsGLW7.1,Hd5(t)*, Hd5, qHD5, HAP3H, OsHAP3H, NF-YB, CBF-A, DTH8 , qHD5(t)*, Ghd8, Ghd8/DTH8, Lhd1, NF-YB11, OsNF-YB11, NFYB11, LH8, DTH8/Ghd8, RH8, DTH8/Ghd8/LHD1, CAR8, DTH8/Ghd8/ OsHAP3H, EF8, OsEF8,Hd17, EF7, Ef7, OsELF3-1, ELF3-1, OsELF3, ELF3, ELF3_chr.6, OsELF3.1, ELF3.1, OsELF3a, ELF3a,Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,JMJ701, Os JMJ701, Se14,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, OsHd1,  Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,Se13, OsHY2, OsGUN3, GUN3, PS13,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,FT-L 3, OsFTL3, FTL3, FT-L3, RFT, OsRFT1,phyB, PHYB1, OsPHYB, OsphyB, OsYHB, YHB, OsPHYB/OsYHB
47251	30824776	Chattopadhyay K., Behera L., Bagchi T.B., Sardar S.S., Moharana N., Patra N.R., Chakraborti M., Das A., Marndi B.C., Sarkar A., Ngangkham U., Chakraborty K., Bose L.K., Sarkar S., Ray S., Sharma S.	Detection of stable QTLs for grain protein content in rice (Oryza sativa L.) employing high throughput phenotyping and genotyping platforms.	Sci Rep	9(1)	3196	2019		
47252	30951090	Chen W., Chen Z., Luo F., Liao M., Wei S., Yang Z., Yang J.	RicetissueTFDB: A Genome-Wide Identification of Tissue-Specific Transcription Factors in Rice.	Plant Genome	12(1)		2019		
47253	30857220	Kou Y., Qiu J., Tao Z.	Every Coin Has Two Sides: Reactive Oxygen Species during Rice?<i>Magnaporthe oryzae</i> Interaction.	Int J Mol Sci	20(5)		2019		
47254	30897507	Jegadeeson V., Kumari K., Pulipati S., Parida A., Venkataraman G.	Expression of wild rice Porteresia coarctata PcNHX1 antiporter gene (PcNHX1) in tobacco controlled by PcNHX1 promoter (PcNHX1p) confers Na+-specific hypocotyl elongation and stem-specific Na+ accumulation in transgenic tobacco.	Plant Physiol. Biochem.	139	161-170	2019		
47255	30875808	Yang X.B., Meng W.L., Zhao M.J., Zhang A.X., Liu W., Xu Z.S., Wang Y.P., Ma J.	Proteomics Analysis to Identify Proteins and Pathways Associated with the Novel lesion mimic Mutant E40 in Rice Using iTRAQ-Based Strategy.	Int J Mol Sci	20(6)		2019		
47256	30840635	Ono S., LIU H., Tsuda K., Fukai E., Tanaka K., Sasaki T., Nonomura K.I.	Correction: EAT1 transcription factor, a non-cell-autonomous regulator of pollen production, activates meiotic small RNA biogenesis in rice anther tapetum.	PLoS Genet.	15(3)	e1008033	2019		
47257	30867515	Tang Q., Yang Z., Han R., Zhang Y., Shen C., Wang J.	No Effect of Bt-transgenic Rice on the Tritrophic Interaction of the Stored Rice, the Maize Weevil Sitophilus Zeamais and the Parasitoid Wasp Theocolax elegans.	Sci Rep	9(1)	4306	2019		
47258	30690492	Wang G.Q., Li H.X., Feng L., Chen M.X., Meng S., Ye N.H., Zhang J.	Transcriptomic analysis of grain filling in rice inferior grains under moderate soil drying.	J. Exp. Bot.	70(5)	1597-1611	2019		
47259	30848355	Ren R., Li D., Zhen C., Chen D., Chen X.	Specific roles of Os4BGlu10, Os6BGlu24, and Os9BGlu33 in seed germination, root elongation, and drought tolerance in rice.	Planta	249(6)	1851-1861	2019		
47260	30847616	Dharmappa P.M., Doddaraju P., Malagondanahalli M.V., Rangappa R.B., Mallikarjuna N.M., Rajendrareddy S.H., Ramanjinappa R., Mavinahalli R.P., Prasad T.G., Udayakumar M., Sheshshayee S.M.	Introgression of Root and Water Use Efficiency Traits Enhances Water Productivity: An Evidence for Physiological Breeding in Rice (Oryza sativa L.).	Rice (N Y)	12(1)	14	2019		
47261	30926863	Mukherjee R., Mukherjee A., Bandyopadhyay S., Mukherjee S., Sengupta S., Ray S., Majumder A.L.	Selective manipulation of the inositol metabolic pathway for induction of salt-tolerance in indica rice variety.	Sci Rep	9(1)	5358	2019		
47262	30875880	Kalemba E.M., Stolarska E.	Regulation of Gene Expression of Methionine Sulfoxide Reductases and Their New Putative Roles in Plants.	Int J Mol Sci	20(6)		2019		
47263	30501464	Olukayode T., Quime B., Shen Y.C., Yanoria M.J., Zhang S., Yang J., Zhu X., Shen W.C., von Tiedemann A., Zhou B.	Dynamic Insertion of Pot3 in <i>AvrPib</i> Prevailing in a Field Rice Blast Population in the Philippines Led to the High Virulence Frequency Against the Resistance Gene <i>Pib</i> in Rice.	Phytopathology	109(5)	870-877	2019		
47264	30657229	Ikeda T., Tanaka W., Toriba T., Suzuki C., Maeno A., Tsuda K., Shiroishi T., Kurata T., Sakamoto T., Murai M., Matsusaka H., Kumamaru T., Hirano H.Y.	BELL1-like homeobox genes regulate inflorescence architecture and meristem maintenance in rice.	Plant J.	98(3)	465-478	2019	SH5	OsSH5, RI, SH5/RI, OsRI, VPB1, OsVPB1
47265	31086495	Sabar M., Shabir G., Shah S.M., Aslam K., Naveed S.A., Arif M.	Identification and mapping of QTLs associated with drought tolerance traits in rice by a cross between Super Basmati and IR55419-04.	Breed. Sci.	69(1)	169-178	2019		
47266	30926826	Ling L., Li X., Wang K., Cai M., Jiang Y., Cao C.	Carbon and nitrogen partitioning of transgenic rice T2A-1 (Cry2A*) with different nitrogen treatments.	Sci Rep	9(1)	5351	2019		
47267	30773587	Arrivault S., Alexandre Moraes T., Obata T., Medeiros D.B., Fernie A.R., Boulouis A., Ludwig M., Lunn J.E., Borghi G.L., Schlereth A., Guenther M., Stitt M.	Metabolite profiles reveal interspecific variation in operation of the Calvin-Benson cycle in both C4 and C3 plants.	J. Exp. Bot.	70(6)	1843-1858	2019		
47268	30689248	Tang Y., Ma X., Zhao S., Xue W., Zheng X., Sun H., Gu P., Zhu Z., Sun C., Liu F., Tan L.	Identification of an active miniature inverted-repeat transposable element mJing in rice.	Plant J.	98(4)	639-653	2019		
47269	30649328	Yurkov A.M., Kurtzman C.P.	Three new species of Tremellomycetes isolated from maize and northern wild rice.	FEMS Yeast Res.	19(2)		2019		
47270	30903405	Kord H., Fakheri B., Ghabooli M., Solouki M., Emamjomeh A., Khatabi B., Sepehri M., Salekdeh G.H., Ghaffari M.R.	Salinity-associated microRNAs and their potential roles in mediating salt tolerance in rice colonized by the endophytic root fungus Piriformospora indica.	Funct. Integr. Genomics	19(4)	659-672	2019		
47271	30825053	Wu Y., Xiao N., Chen Y., Yu L., Pan C., Li Y., Zhang X., Huang N., Ji H., Dai Z., Chen X., Li A.	Comprehensive evaluation of resistance effects of pyramiding lines with different broad-spectrum resistance genes against Magnaporthe oryzae in rice (Oryza sativa L.).	Rice (N Y)	12(1)	11	2019		
47272	30871778	Tan L., Zhu Y., Fan T., Peng C., Wang J., Sun L., Chen C.	OsZIP7 functions in xylem loading in roots and inter-vascular transfer in nodes to deliver Zn/Cd to grain in rice.	Biochem. Biophys. Res. Commun.	512(1)	112-118	2019		
47273	30715410	Wari D., Kabir M.A., Mujiono K., Hojo Y., Shinya T., Tani A., Nakatani H., Galis I.	Honeydew-associated microbes elicit defense responses against brown planthopper in rice.	J. Exp. Bot.	70(5)	1683-1696	2019		
47274	30831474	Li X., Ma L., Li Y., Wang L., Zhang L.	Endophyte infection enhances accumulation of organic acids and minerals in rice under Pb2+ stress conditions.	Ecotoxicol. Environ. Saf.	174	255-262	2019		
47275	30740793	Luo L., Takahashi M., Kameoka H., Qin R., Shiga T., Kanno Y., Seo M., Ito M., Xu G., Kyozuka J.	Developmental analysis of the early steps in strigolactone-mediated axillary bud dormancy in rice.	Plant J.	97(6)	1006-1021	2019		
47276	31086492	Bakti C., Tanaka J.	Detection of dominant QTLs for stigma exsertion ratio in rice derived from <i>Oryza rufipogon</i> accession 'W0120'.	Breed. Sci.	69(1)	143-150	2019		
47277	30872262	Liu Z.Q., Zhao Y.X., Fu X.L., Li N.	[Design and exploration of genetic experiments for non-Mendelian segregation].	Yi Chuan	41(3)	262-270	2019		
47278	30912381	Jing L.Q., Hu S.W., Lu Q., Niu X.C., Wang Y.X., Zhu J.G., Wang Y.L., Yang L.X.	Effects of elevated atmospheric CO2 concentration on photosynthsis of hybrid rice varieties in cloudy and sunny days: A FACE study.	Ying Yong Sheng Tai Xue Bao	30(3)	884-892	2019		
47279	31594849	Yi-Shih Chen, Tuan-Hua David Ho, Liu L., Ding Hua Lee, Chun-Hua Lee, Yi-Ru Chen, Shu-Yu Lin, Chung-An Lu, Su-May Yu	Sugar starvation-regulated MYBS2 and 14-3-3 protein interactions enhance plant growth, stress tolerance, and grain weight in rice.	Proc. Natl. Acad. Sci. U.S.A.	116(43)	21925-21935	2019	GF14B,GF14D,AMY3D,MYBS1,GF14C,MYBS2,GF14G	GF14b, OsGF14b, 14-3-3b,GF14d, OsGF14d, Os14-3-3, 14-3-3d,Amy3D/E*(RAmy3D/E), alpha Amy3, AmyII-4, AMY1.3, Amy3D, Amy3D/E*, RAmy3D/E, Amy3D_E, Amy8, aAmy3, RAmy3D, OsAmy3D, alphaAmy3, OsRamy3D,OsMYBS1, Os-MYBS1, Mybs1,GF14c, OsGF14c, 14-3-3c,OsMYBS2,GF14g, OsGF14g, 14-3-3g
47280	31729387	Gao Z., Wang Y., Chen G., Zhang A., Yang S., Shang L., Wang D., Ruan B., Liu C., Jiang H., Dong G., Zhu L., Hu J., Zhang G., Zeng D., Guo L., Xu G., Teng S., Nicholas P Harberd, Qian Q.	The indica nitrate reductase gene OsNR2 allele enhances rice yield potential and nitrogen use efficiency.	Nat Commun	10(1)	5207	2019	NPF6.5,_	OsNRT1.1B, NRT1.1B, OsNPF6.5,OsNIA1, OsNia1, NIA1, Nia1, OsNR, NR, OsNR2, NR2, NIA2
47281	31679061	Jin X., Baysal C., Gao L., Medina V., Drapal M., Ni X., Sheng Y., Shi L., Capell T., Paul D Fraser, Christou P., Zhu C.	The subcellular localization of two isopentenyl diphosphate isomerases in rice suggests a role for the endoplasmic reticulum in isoprenoid biosynthesis.	Plant Cell Rep.	39(1)	119-133	2020	LAS1,IPPI2,HDR2,IPI	HDR, OsHDR, OsIspH, IspH, OsHDR1, HDR1, OsLAS1, LAS1/OsHMBPP, OsHMBPP, HMBPP, OsIspH1, IspH1, YGL3, OsYGL3,OsIPPI2,OsHDR2, OsIspH2, IspH2,OsIPI, ipi, OsIPPI1, IPPI1
47282	31414258	Basnet R., Hussain N., Shu Q.	OsDGD2beta is the Sole Digalactosyldiacylglycerol Synthase Gene Highly Expressed in Anther, and its Mutation Confers male sterility in Rice.	Rice (N Y)	12(1)	66	2019	DGD1A,DGD1D,DGD2A,C6,DGD1B,TDR,DGD2B,WDA1,GAMYB	OsDGD1alpha, DGD1alpha, OsDGD1A,OsDGD1delta, DGD1delta, OsDGD1D,OsDGD2alpha DGD2alpha, OsDGD2A, OsDGD1, DGD1,Osc6, Osg6B, OsG6B, OsLTPG25, OsLTPg25, OsLtpVII.1, Os C6,OsDGD1beta, DGD1beta, OsDGD1B, OsDGD5, DGD5,tdr, OsbHLH005, bHLH005, OsbHLH5, bhlh5, TDR1, OsTDR, OsTDR1, OsMYC5, MYC5,OsDGD2beta DGD2beta, OsDGD2B,OsWDA1, Wda1, wda1, OS-CER1, OsGL1-5,OsGAMYB, GAM1, OsGAMyb, Os-MYBGA, Os GAMYB, OsMYBGA, MYBGA, Os2R_MYB15, 2R_MYB15 
47283	31436865	Xu F., Tang J., Gao S., Cheng X., Du L., Chu C.	Control of rice pre-harvest sprouting by glutaredoxin-mediated abscisic acid signaling.	Plant J.	100(5)	1036-1051	2019	PHS9,PYL/RCAR7,ABI5,C2DP64,VP1	OsGRX3, GRX3,OsPYL/RCAR7, PYL7, OsPYL7, OsPYL8, PYL8, OsEnS-90, RCAR1, OsRCAR1,OsABI5, OsbZIP10, OsABF1, OREB1, OsABI5-1, OsABI5-2, OsOREB1, OREB1 ,OsGAP, GAP, OsC2DP64,Vp1* (OSVP1), OsVP1, OsVp1, Vp1, ABI3, OsABI3, OsLFL4, OsVp-1, OSVP1
47284	31446676	Geng Y., Zhang P., Liu Q., Wei Z., Riaz A., Chachar S., Gu X.	Rice homolog of Sin3-associated polypeptide 30, OsSFL1, mediates histone deacetylation to regulate flowering time during short days.	Plant Biotechnol. J.	18(2)	325-327	2020	HD3A,SFL1	Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,OsSFL1
47285	31449354	Wang W., Wei X., Jiao G., Chen W., Wu Y., Sheng Z., Hu S., Xie L., Wang J., Tang S., Hu P.	GBSS-binding protein, encoding a CBM48 domain-containing protein, affects rice quality and yield.	J Integr Plant Biol			2019	WX1,GBSSII,GBP	wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx,GBSS2, OsGBSSII, OsGBSS2,OsGBP
47286	31451662	Fang J., Zhang F., Wang H., Wang W., Zhao F., Li Z., Sun C., Chen F., Xu F., Chang S., Wu L., Bu Q., Wang P., Xie J., Chen F., Huang X., Zhang Y., Zhu X., Han B., Deng X., Chu C.	<i>Ef-cd</i> locus shortens rice maturity duration without yield penalty.	Proc. Natl. Acad. Sci. U.S.A.	116(37)	18717-18722	2019	HD3A,RFT1,EF-CD,MADS50	Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,FT-L 3, OsFTL3, FTL3, FT-L3, RFT, OsRFT1,Ef-cd, OsEf-cd,OsMADS50, AGL20, SOC1, OsSOC1, RMADS208, OsSOC1/ OsMADS50/DTH3, DTH3, OsDTH3
47287	31484684	Wang Z., Yamaji N., Huang S., Zhang X., Shi M., Fu S., Yang G., Jian Feng Ma, Xia J.	oscasp1 Is Required for Casparian Strip Formation at Endodermal Cells of Rice Roots for Selective Uptake of Mineral Elements.	Plant Cell	31(11)	2636-2648	2019	LSI1,CASP3,CASP4,CASP2,CASP5,CASP1	lsi1, NIP2-1, OsNIP2;1, NIP2;1, OsLsi1, lsi(t), OsNIP2.1/OsLsi1/OsSIIT1, OsNIP2.1, NIP2.1,OsCASP3,OsCASP4,OsCASP2,OsCASP5,OsCASP1
47288	31485784	L L Liu, J You, Z Zhu, K Y Chen, M M Hu, H Gu, Z W Liu, Z Y Wang, Y H Wang, S J Liu, L M Chen, X Liu, Y L Tian, S R Zhou, L Jiang, J M Wan	WHITE STRIPE LEAF8, encoding a deoxyribonucleoside kinase, is involved in chloroplast development in rice.	Plant Cell Rep.	39(1)	19-33	2020	PSAB,PSAA,CATA,RPOC1,PSBA,DNK2,NDHD,CATB,WSL8,AOX1B,_,AOX1A,APX1,RPOB,SODA1	PsaB, psaB, PsAA2, psaA2,PsaA, psaA, PsAA1, psaA1,CATA1, Cat A1*, OSCAT-A, Cat2, CatA1, CAT-A, OsCatA, OsCAT, CAT, catA, OSCATA, OsCATc, OsCATA, OsCAT1A, CAT1, OsCAT1, OsCATC, OsCAT2,rpoC1, RPO beta', RPObeta', OsRPOC1,PsbA, psbA, OsPsbA, PSBD1, OsPSBD1, psbD1,OsdNK2, dNK2,ndhD, NdhD, NDH4, NADH4,CatB, CAT-B, OsCatB, OsCATB, OsCAT1B, CAT1B, CAT2, OsCAT2,OsWSL8, OsdNK1, dNK1,AOX1b, OsAOX1b,atpA,Ao1-1, AOX1a, OsAOX1a, AOX 1a,OsAPX1, APXa, OsAPXa, OsAPx01, OsAPx1, OSAPX1, APx1, cAPX, APX2, cAPXa, OscAPXa,rpoB, RpoB, Rpobeta,SodA1, OsSODA1, Mn-SOD, Mn- SOD, OsMSD, MnSOD, OsMnSOD, MnSOD1, OsMnSOD1
47289	31486533	Palash Chandra Mondol, Xu D., Duan L., Shi J., Wang C., Chen X., Chen M., Hu J., Liang W., Zhang D.	Defective pollen Wall 3 (DPW3), a novel alpha integrin-like protein, is required for pollen wall formation in rice.	New Phytol.	225(2)	807-822	2020		
47290	31510917	Chen K., Guo T., Xin-Min Li, Yi-Bing Yang, Nai-Qian Dong, Chuan-Lin Shi, Wang-Wei Ye, Jun-Xiang Shan, Hong-Xuan Lin	NAL8 encodes a prohibitin that contributes to leaf and spikelet development by regulating mitochondria and chloroplasts stability in rice.	BMC Plant Biol.	19(1)	395	2019	AOX1C,NAL8,NDB3,AOX1A,NDA	OsAOX1c,OsNAL8,OsNDB3,Ao1-1, AOX1a, OsAOX1a, AOX 1a,OsNDA, NDB3, OsNDB3, OsNDB2, NDB2
47291	31519786	Liu E., Zeng S., Zhu S., Liu Y., Wu G., Zhao K., Liu X., Liu Q., Dong Z., Dang X., Xie H., Li D., Hu X., Hong D.	Favorable Alleles of <i>GRAIN-FILLING RATE1</i> Increase the Grain-Filling Rate and Yield of Rice.	Plant Physiol.	181(3)	1207-1222	2019	RBCS,SSIIB,CPD2,CPD1,SSI,SUT5,RBCS3,IAA20,_,GFR1,CIN1,IAA10,RBCS5,IAA2,RBCS4,RBCS1	rbcS, OsRbcS, RBCS-C, RbcS2, OsRBCS2, RbcS1, OsRbcS2, OsrbcS1,OsSSIIb, OsSSII-2, SSII-2, SS2, OsSSSIIb, SS2b,OsCPD2, CYP90A4, CYP90A4/OsCPD2,OsCPD1, CYP90A3, CYP90A3/OsCPD1, CPD, OsCPD2, CPD2,OsSSI, SSS 1, SSS1, SS1, OsSS1, SSSI, OsSSSI,OsSUT5(t), OsSUT5Z, OsSUT5,RbcS3, OsRBCS3, OsRbcS3, rbcS ,OsIAA20,OsrbcL1, rbcL1,OsGFR1,OSCIN1, OsCIN1,OsIAA10, OsIAA5, DLN71, OsDLN71,RbcS5, OsRBCS5, OsRbcS5, RbcS3, OsRbcS3,OsIAA2,RbcS, RbcS4, OsRBCS4, OsRbcS4,RbcS1, OsRBCS1, OsRbcS1
47292	31548376	Yamauchi T., Tanaka A., Inahashi H., Naoko K Nishizawa, Tsutsumi N., Inukai Y., Nakazono M.	Fine control of aerenchyma and lateral root development through AUX/IAA- and ARF-dependent auxin signaling.	Proc. Natl. Acad. Sci. U.S.A.	116(41)	20770-20775	2019	IAA13,ARF7A,LBD5-3,LBD1-8,SAUR22	OsIAA13, OsIAA1, OsiIAA1,OsARF7a, OsARF19, ARF19, OsARF7,OsLBD5-3,OsLBD1-8,OsSAUR22
47293	31550392	Fang F., Ye S., Tang J., Malcolm J Bennett, Liang W.	DWT1/DWL2 act together with OsPIP5K1 to regulate plant uniform growth in rice.	New Phytol.	225(3)	1234-1246	2020	DWT1,PIP5K1,WOX9C	OsWOX7, Os WOX7, WOX7, OsWOX9A, DWT1/WOX9A, OsDWT1, WOX9A,OsPIP5K1,OsWOX9C, DWL2, OsDWL2, DWL2/WOX9C
47294	31622529	BaoJun Yang, Jos R Wendrich, Bert De Rybel, Weijers D., Hong-Wei Xue	Rice microtubule-associated protein IQ67-DOMAIN14 regulates grain shape by modulating microtubule cytoskeleton dynamics.	Plant Biotechnol. J.			2019	CAM1-1,IQD14,CALA,_	OsCaM1, OsCam1-1, OsCaM1-1, CAM3, Cam1-1, OsCAM1.1, CAM1.1,OsIQD14,CALa*, Cal1, CaM-2, CAM2, CAM, OsCaM2, OsCam2, OsCaM1, CaM1,OsCaM3, OsCam3, CaM3
47295	31679005	Zhou J., Li Z., Xiao G., Zhai M., Pan X., Huang R., Zhang H.	OsCYP71D8L as a key regulator involved in growth and stress response by mediating gibberellins homeostasis in rice.	J. Exp. Bot.			2019	CKX4,CATB,APX7,CYP71D8L,APX2	OsCKX4, ckx4, OsSCRM, OsSCRM2, SCRM, SCRM2,CatB, CAT-B, OsCatB, OsCATB, OsCAT1B, CAT1B, CAT2, OsCAT2,OsAPx7, OsAPx07, OSAPX7, APx7, sAPX,OsCYP71D8L,OsAPX2, OsAPx02, APXb, OsAPx2, OSAPX2, APx2, cAPX, OsAPX1, APX1
47296	31697317	Fumika Clara Kubo, Yasui Y., Ohmori Y., Kumamaru T., Tanaka W., Hiro-Yuki Hirano	DWARF WITH SLENDER LEAF1 encoding a histone deacetylase plays diverse roles in rice development.	Plant Cell Physiol.			2019	DSL1	OsDSL1, OsHDA711, HDA711, OsHDA9, HDA9
47297	31701152	Liu X., Wen-Jing Cai, Yin X., Yang D., Dong T., Yu-Qi Feng, Wu Y.	Two dioxygenases, slc1 and SLC2, play essential roles in shoot development of rice.	J. Exp. Bot.			2019	OSH15,_,SLC2,PR1B,PR5,SLC1,OSH1,PR1A,OSH6	OSH15, OsH15, OSKN3, Oskn3, HOS3, D6, d6, OSH15/Oskn3, HB253, H15, OsKNOX3, KNOX3,OsPR2, PR2, OsGlu1, Glu1,OsSLC2, OsACO, ACO,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1, OsPR1a, PR1a,OsPR5, Pir2, PR-5, PR5-1,OsSLC1, GA20OX7, OsGA20ox7, ga20ox7, 2-ODD4, Os2-ODD4, 2ODD4, Os2ODD4,OSKN1, Oskn1, OsKN1, OSH1/Oskn1, HB75,OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1, OsPR1b, PR1alpha, OsPR1alpha,OsH6, HOS16
47298	31731237	Jeroen De Zaeytijd, Chen P., Scheys F., Subramanyam K., Dubiel M., Kristof De Schutter, Smagghe G., Els Jm Van Damme	Involvement of OsRIP1, a ribosome-inactivating protein from rice, in plant defense against Nilaparvata lugens.	Phytochemistry	170	112190	2020	RIP1.1	OsRIP1, RIP1, OsjRIP1.1
47299	0	Shen G., Cheng Zhu2, Du Q.	Genome-wide identification of PHYTOCHELATIN and PHYTOCH_SYNTH domain-containing PHYTOCHELATIN family from rice	Electronic Journal of Biology	6(3)	73-79	2010	BC1L2,BC1L7,PCS9,BC1L8,BC1L6,BC1L9,BC1L3,BC1L5,BC1L4,PCS10,PCS5,BC1,BC1L1,PCS1	OsBC1L2, OsPCS4, PCS4,OsBC1L7, OsPCS6, PCS6,OsPCS9,OsBC1L8, PCS12, OsPCS12,OsBC1L6, OsPCS8, PCS8,OsBC1L9, OsPCS2, PCS2,OsBC1L3, OsPCS14, PCS14,OsBC1L5, OsPCS11, PCS11,OsBC1L4, OsPCS7, PCS7,OsPCS10,OsPCS, PCS, OsPCS2, PCS2, OsPCS2a, PCS2a, OsPCS2b, PCS2b, OsPCS1, PCS1, OsPCS1a, OsPCS1b, OsPCS1c, OsPCS1full, OsPCS5,bc1, bc-1, OsBC1, CWA1, FP1, OsPCS3, PCS3,OsBC1L1, OsPCS13, PCS13,OsPCS1, OsPCS2, PCS2, OsPCS15, PCS15
47300	31521223	Chen W., Cheng Z., Liu L., Wang M., You X., Wang J., Zhang F., Zhou C., Zhang Z., Zhang H., You S., Wang Y., Luo S., Zhang J., Wang J., Wang J., Zhao Z., Guo X., Lei C., Zhang X., Lin Q., Ren Y., Zhu S., Wan J.	Small Grain and Dwarf 2, encoding an HD-Zip II family transcription factor, regulates plant development by modulating gibberellin biosynthesis in rice.	Plant Sci.	288	110208	2019	SGD2	HOX3, Oshox3, OsHox3, OsHDZ1, HDZ1, OsHDZIP1, HDZIP1
47301	31420780	Xiao Y., You S., Kong W., Tang Q., Bai W., Cai Y., Zheng H., Wang C., Jiang L., Wang C., Zhao Z., Wan J.	A GARP transcription factor anther dehiscence defected 1 (Osadd1) regulates rice anther dehiscence.	Plant Mol. Biol.	101(4-5)	403-414	2019	ND1,RL9	CSLD4, OsCSLD4, OsCD1, CD1, DNL3, OsDNL3, NRL1, OsNRL1, SPO1, OsSPO1, SPO1/OsCSLD4,rl9, SLL1/RL9, SLL1, OsSLL1, OsADD1, ADD1, KANADI1, AH2, OsAH2, CL1, OsCL1
47302	31358682	Wang S., Yang H., Mei J., Liu X., Wen Z., Zhang L., Xu Z., Zhang B., Zhou Y.	Rice Homeobox Protein KNAT7 Integrates the Pathways Regulating Cell Expansion and Wall Stiffness.	Plant Physiol.	181(2)	669-682	2019	GS2,EXPB17,EXPA7,NAC31,EXPB3,EXPA6,BC7,_,CEF1,KNAT7,CESA7	OsGRF4, GRF4, GS2/OsGRF4, PT2, GLW2, GS2/GL2, LGS1, OsLGS1,OsEXPB17,OsEXPA7, EXP7, OsEXP7, OsaEXPa1.26,ONAC031, ONAC31, OsSWN3,OsEXPB3, osaEXPb1.10, EXPb1.10,OsEXPA6, OsEXP6, osaEXPa1.24,OsCesA4, OsCESA4, CESA4, OS_CESA04, BC11, bc7t, Bc7(t), bc-7, OsCesA 4, CesA4, FC17/CESA4, FC17, OsFC17,OsMYB55/61, OsMYB55, MYB55, OsMYB61, MYB61, OsMYB61a, MYB61a, Os2R_MYB5, 2R_MYB5 ,OsMYB103, OsMYB103L, CEF1/OsMYB103L, MYB103, MYB103L, OsMYB93, MYB93, OsFC9, FC9, Os2R_MYB74, 2R_MYB74,HOS66, HB365, OsKNAT7,OsCesA7, OsCESA7, OS_CESA07, OsCesA 7, CesA7
47303	31597397	Geun-Hee Choi, Back K.	Suppression of Melatonin 2-Hydroxylase Increases Melatonin Production Leading to the Enhanced Abiotic Stress Tolerance against Cadmium, Senescence, Salt, and Tunicamycin in Rice Plants.	Biomolecules	9(10)		2019	RBCL,P5CR,ODD21,2ODD11,_,BIP4,HKT1,SOD4	rbcL, rbcA, OsrbcL,OsP5CR,OsSTA135, STA135, OsODD21, 2-ODD21, Os2-ODD21, Os2ODD21, M2H, OsM2H, OsF3H5, F3H5,OsODD11, ODD11, 2-ODD11, Os2-ODD11, 2ODD11, Os2ODD11, M3H, OsM3H,atpI,OsBiP4, BiP4, OsMed37_5, Med37_5, BiP2,OsHKT1, OsHKT2;1, HKT2;1, Ni (Nipponbare)-OsHKT1, Po (Pokkali)-HKT1, OsHKT1;1, HKT1;1,OsSOD4, OsCSD4, OsCu/Zn-SOD1, Cu/Zn-SOD1, OsCSD2, CSD2, OsSOD4-Cu/Zn, SOD4-Cu/Zn, Cu/ZnSOD3, CuZnSOD3, sodCp, OssodCp, OsCu/ZnSOD3, CuZnSOD2, OsSOD1
47304	31446514	Atul Prakash Sathe, Su X., Chen Z., Chen T., Wei X., Tang S., Xiao-Bo Zhang, Jian-Li Wu	Identification and characterization of a spotted-leaf mutant spl40 with enhanced bacterial blight resistance in rice.	Rice (N Y)	12(1)	68	2019	AOS2,RBCL,SH11,HEMA,PAL1,PSBA,YGL98,SODA1,NH1,RBCS,CHT4,FGL,_,PAL,SGR,PR10A,SPL40,ELL,MC2,MC5,WRKY45,MC3,AMTR1,MC4,PR4,PAL1,_,CHS,KAT1,_,NOE1,TIFY11A,MC6,SODB,WRKY96,SODCC1,PR1B,MC8	OsAOS2, CYP74A2, OsAOS, OsAOS1,rbcL, rbcA, OsrbcL,OsJAmyb, JAmyb, OsJAMyb, OsMYB21, MYB21, Os2R_MYB91, 2R_MYB91, OgSH11, OsSH11,HEMA1, OsHEMA, GluTR, OsHEMA1, hemA,OsPAL, Pal1*, Pal1, PAL, Pal_1, PalI, PAL2, OsPAL01, PAL01, OSPAL, CP-1, GP-1, OsPAL1, PAL3, OsPAL3,PsbA, psbA, OsPsbA, PSBD1, OsPSBD1, psbD1,OsChlD, ChlD, CHLD, OsCHLD, Ygl7, YGL3, OsvWA12, vWA12,SodA1, OsSODA1, Mn-SOD, Mn- SOD, OsMSD, MnSOD, OsMnSOD, MnSOD1, OsMnSOD1,OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2, DLN5, OsDLN5,  OsBTBA1, BTBA1,rbcS, OsRbcS, RBCS-C, RbcS2, OsRBCS2, RbcS1, OsRbcS2, OsrbcS1,Cht4(t)*(Chi4), Chi4, Cht4, OsChia2b, Chi-4, CHIT2, OsCHIT2, PR3, OsPR3,fgl(fl), fl, fgl, OsFGL, OsPorB, PoPA, PORA, porA, OsPORA, PORB, OsPORB,OsPAL02, PAL02, OsPAL5, PAL5, OsPAL2. PAL2, OsPAL1,OsPAL, OsPAL08, PAL2, GP-28, GP28, PAL08, OsPAL2, OsPAL8, PAL8,sgr(t), sgr, OsSGR, OsSgr, SGR1, OsSGR1,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsMed5_1, Med5_1,chlI, OsChlI, ChlI, CHLI, OsCHLI, OsCHLI/ELL, OsELL,OsMC2,OsMC5,OsWRKY45, OsWRKY45-1, OsWRKY45-2, WRKY45-1, WRKY45-2,OsMC3, OsSTA102,Osh36, OsH36, H36, OsAMTR1,OsMC4,OsPR4, OsPR4a, PR4a, OsPR-4,OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6,OsPAL04, PAL04, PAL, OsPAL7, PAL7,CHS*, Oschs, chs, chas, OsCHS, OsCHS1, CHS1, OsPKS26, PKS26, OsCHS24, CHS24, OsCHS27, CHS27,OsI57, I57, OsKAT1, OsACAA1, ACAA1,OsPAL05, PAL05, OsPAL3, PAL5, PAL3, OsPAL2;3, PAL2;3, OsPAL2-1, PAL2-1,CATC, OsCat, OsCatC, OsCATC, OsNOE1, noe1, catC, OsCATC, CAT3, OsCAT3, LLM9428, OsLLM9428,OsJAZ3, JAZ3, OsJAZ 9, OsJAZ9, Os-JAZ9, JAZ9, OsTIFY11a, OsJAZ6, JAZ6,OsMC6,SodB, Fe-SOD, Fe- SOD, OsFe-SOD, Fe+-SOD, OsFe+-SOD, OsFe-SODa, OsFe-SODb, OsFeSODb, FeSODb, OsFSD1.2, FSD1.2, FeSOD2, OsFSD2, FSD2, OsFSD1, FSD1, ALM1, OsALM1,OsWRKY96,sodCc1, SODCC.1, sodA, RSODA, OsSOD1, OsCSD2, OsSodA, SodCc2, OsSODA1, SODCc1-Cu/Zn, OsCu/Zn-SOD2, Cu/Zn-SOD2, OsCSD1.2, CSD1.2, OsSODCc1-Cu/Zn, SODCc1-Cu/Zn, CuZnSOD1, Cu/ZnSOD1, OsCu/ZnSOD1, OsCSD4, CDS4, CuZnSOD4, OsCuZnSOD1, OsCSD1, CSD1, OsSOD2,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1, OsPR1a, PR1a,OsMC8
47305	31515447	Bai W., Wang P., Hong J., Kong W., Xiao Y., Yu X., Zheng H., You S., Lu J., Lei D., Wang C., Wang Q., Liu S., Liu X., Tian Y., Chen L., Jiang L., Zhao Z., Wu C., Wan J.	<i>Earlier Degraded Tapetum1</i> (<i>EDT1</i>) Encodes an ATP-citrate lyase Required for Tapetum Programmed Cell Death.	Plant Physiol.	181(3)	1223-1238	2019	RADC1,CP1,CYP704B2,TDR,EDT1,EAT1,MS2	OsAP25, Radc1, OsRADC1, AP25,OsCP1, Os CP1,OsCYP704B2,tdr, OsbHLH005, bHLH005, OsbHLH5, bhlh5, TDR1, OsTDR, OsTDR1, OsMYC5, MYC5,OsACL-A1, ACL-A1, ACLA1, OsEDT1, ACLA-2, OsACLA-2,OsEAT1, OsbHLH141, EAT1/DTD1, bHLH141, DTD1, DTD, DLN120, OsDLN120,OsMS2, OsDPW, DPW, DPW1, OsDPW1, OsFAR2, FAR2
47306	30042352	Wang H., Zhang Y., Sun L., Xu P., Tu R., Meng S., Wu W., Anis G.B., Hussain K., Riaz A., Chen D., Cao L., Cheng S., Shen X.	<i>WB1</i>, a Regulator of Endosperm Development in Rice, Is Identified by a Modified MutMap Method.	Int J Mol Sci	19(8)		2018	FLO6,FLO4,AGPL1,GIF1,AGPS1	OsSIP4, SIP4, OsFLO6, OsSFq3, SFq3,FLO4-4, flo4, flo4-2, flo4-3, ppdk, OsPPDK, PPDK1, CPDK1, PPDKB, OsPPDKB, cyOsPPDKB, OsPBDK, PBDK, osppdkb, PPD, cyPPDK, chPPDKB, chOsPPDKB,OsAGPL1, OsAPL1, APL1, OsAGPL3, AGPL3, OsAGPSL3, AGPSL3,gif1, CIN2, OsCIN2, OsGIF1, WB1, OsWB1, GIF1/OsCIN2,OsAGPS1, APS1, OsAPS1, AGPsma
47307	25798936	Takagi H., Tamiru M., Abe A., Yoshida K., Uemura A., Yaegashi H., Obara T., Oikawa K., Utsushi H., Kanzaki E., Mitsuoka C., Natsume S., Kosugi S., Kanzaki H., Matsumura H., Urasaki N., Kamoun S., Terauchi R.	MutMap accelerates breeding of a salt-tolerant rice cultivar.	Nat. Biotechnol.			2015	HST1	RR22, OsRR22, Rrb4, Orr2, OsRR20, OsRRB4, OsHST1
47308	31352021	Agarwal P., Singh P.C., Chaudhry V., Shirke P.A., Chakrabarty D., Farooqui A., Nautiyal C.S., Sane A.P., Sane V.A.	PGPR-induced OsASR6 improves plant growth and yield by altering root auxin sensitivity and the xylem structure in transgenic Arabidopsis thaliana.	J. Plant Physiol.	240	153010	2019		
47309	31277576	Zhu J., Ren Y., Wang Y., Liu F., Teng X., Zhang Y., Duan E., Wu M., Zhong M., Hao Y., Zhu X., Lei J., Wang Y., Yu Y., Pan T., Bao Y., Wang Y., Wan J.	OsNHX5-mediated pH homeostasis is required for post-Golgi trafficking of seed storage proteins in rice endosperm cells.	BMC Plant Biol.	19(1)	295	2019	GPA6	OsNHX5, NHX5, OsGPA6
47310	31341087	Xue Z., Liu C., Shi W., Miao Y., Shen Y., Tang D., Li Y., You A., Xu Y., Chong K., Cheng Z.	OsMTOPVIB is required for meiotic bipolar spindle assembly.	Proc. Natl. Acad. Sci. U.S.A.	116(32)	15967-15972	2019	TOP6A1,MTOPVIB,RAD21-4,PRD2,PAIR2,CRC1	OsTOP6A1, OsSPO11-1, OsSPO11A, SPO11-1,OsMTOPVIB,OsRad21-4, REC8, OsREC8, OsRAD21-4,OsPRD2, OsPRD2/MPS1, OsMPS1, MPS1,Pair2, OsPAIR2, OsASY1,OsCRC1
47311	31312920	Li B., Sun S., Gao X., Wu M., Deng Y., Zhang Q., Li X., Xiao J., Ke Y., Wang S.	Overexpression a "fruit-weight 2.2-like" gene OsFWL5 improves rice resistance.	Rice (N Y)	12(1)	51	2019	AOS2,PR1A,PCR1,ICS1,WRKY13,TIFY6B	OsAOS2, CYP74A2, OsAOS, OsAOS1,OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1, OsPR1b, PR1alpha, OsPR1alpha,OsFWL5, FWL5, OsPcr1, OsPCR1, OsFWL5/OsPCR1, OsFWL7, FWL7,OsICS1, OsICS, ICS,OsWRKY13,OsJAZ8, JAZ8, OsJAZ 4, OsJAZ4, JAZ4, OsTIFY6b, OsJAZ4-2, JAZ4-2. OsJAZ3, JAZ3
47312	31277505	Mano F., Aoyanagi T., Kozaki A.	Atypical Splicing Accompanied by Skipping Conserved Micro-exons Produces Unique WRINKLED1, An AP2 domain transcription factor in Rice Plants.	Plants (Basel)	8(7)		2019	WRI1-2,WRI4,WRI1-1,WRI3	AP2/EREBP155, AP2/EREBP#155, OsWRI1-2, OsWRI1b, WRI1b,AP2/EREBP99, AP2/EREBP#099, OsWRI4,AP2/EREBP131, AP2/EREBP#131, OsWRI1-1, OsWRI1a, WRI1a,AP2/EREBP52, AP2/EREBP#052, ERF52, OsWRI3
47313	31320793	Wang B., Li M., Yuan Y., Liu S.	Genome-Wide Comprehensive Analysis of the SABATH Gene Family in <i>Arabidopsis</i> and Rice.	Evol. Bioinform. Online	15	1176934319860864	2019	_,JMT1,_,_,_,_,JMT2,_,_,_,_,_,JMT1,JMT2,_,4OCLAMT1,IAMT1,_,_,_,SAMT	,JMT-1, OsJMT-1, OsJMT1,,,,,JMT-2, OsJMT-2, OsJMT2,,,,,,OsJMT1, JAMT1, OsJAMT1,OsJMT1, JMT1, OsJMT2,,Os4OCLAMT1,OsIAMT1, OsSABATH4,,,,OsSAMT, OsJMT1, JMT1, Os4OCLAMT2, 4OCLAMT2
47314	31377396	Li Y., Gong B., Liang X., Wu Y.	Direct electrochemistry of bacterial surface displayed cytokinin oxidase and its application in the sensitive electrochemical detection of cytokinins.	Bioelectrochemistry	130	107336	2019		
47315	31306715	Jayabalan S., Pulipati S., Ramasamy K., Jaganathan D., Venkatesan S.D., Vijay G., Kumari K., Raju K., Hariharan G.N., Venkataraman G.	Analysis of genetic diversity and population structure using SSR markers and validation of a Cleavage Amplified Polymorphic Sequences (CAPS) marker involving the sodium transporter OsHKT1;5 in saline tolerant rice (Oryza sativa L.) landraces.	Gene	713	143976	2019		
47316	31302409	Singh R.R., Chinnasri B., De Smet L., Haeck A., Demeestere K., Van Cutsem P., Van Aubel G., Gheysen G., Kyndt T.	Systemic defense activation by COS-OGA in rice against root-knot nematodes depends on stimulation of the phenylpropanoid pathway.	Plant Physiol. Biochem.	142	202-210	2019		
47317	31266799	Zhang J., Wang C., Higgins J.D., Kim Y.J., Moon S., Jung K.H., Qu S., Liang W.	A Multiprotein Complex Regulates Interference-Sensitive Crossover Formation in Rice.	Plant Physiol.	181(1)	221-235	2019	RMC1,PTD1,HEI10,ZIP4,MSH5,RAD,SHOC1	MER3, mer3, OsMER3, RCK, OsRCK, Os-MER3,OsPTD1,HEI10A, HEI10B, OsHEI10,  OsRING434, RING434,OsZIP4, SPO22, OsSPO22,OsMSH5,rad,rad*, OsRAD, GEN1, OsGEN-L, OsGEN1 ,OsSHOC1
47318	31481196	Gao Z., Liu Q., Zhang Y., Fang H., Zhang Y., Sinumporn S., Abbas A., Ning Y., Wang G.L., Cheng S., Cao L.	A proteomic approach identifies novel proteins and metabolites for lesion mimic formation and disease resistance enhancement in rice.	Plant Sci.	287	110182	2019		
47319	31284830	Suzuki C., Tanaka W., Tsuji H., Hirano H.Y.	<i>TILLERS ABSENT1</i>, the <i>WUSCHEL</i> ortholog, is not involved in stem cell maintenance in the shoot apical meristem in rice.	Plant Signal Behav	14(9)	1640565	2019	ASP1,FON2,TAB1	OsLIS-L1, OsWD40-155, ASP1, TPR2, OsTPR2, OsREL2, REL2, OsTPL3, TPL3, OsTPL2, TPL2, ASP-LSL,fon2, OsFON2, FON4, OsFON4, FON2/FON4, TG1,Os WUS, WUS, OsWOX1, WOX1, OsWUS, OsTAB, TAB1/WUS, MOC3, MOC3/OsWUS, SRT1, MOC3/TAB1/SRT1, DC1, OsDC1, DAP1, OsDAP1
47320	31284822	Liu X., Li J., Noman A., Lou Y.	Silencing <i>OsMAPK20-5</i> has different effects on rice pests in the field.	Plant Signal Behav	14(9)	e1640562	2019	MPK7	OsMPK7, OsMAPK44, MAPK44, OsMAPK20-5, MAPK20-5
47321	31337776	Soda N., Gupta B.K., Anwar K., Sharan A., Govindjee, Singla-Pareek SL., Pareek A.	Author Correction: Rice intermediate filament, OsIF, stabilizes photosynthetic machinery and yield under salinity and heat stress.	Sci Rep	9(1)	11015	2019		
47322	31028396	Tang Z., Chen Y., Miller A.J., Zhao F.J.	The C-type ATP-Binding Cassette Transporter OsABCC7 Is Involved in the Root-to-Shoot Translocation of Arsenic in Rice.	Plant Cell Physiol.	60(7)	1525-1535	2019		
47323	31289958	Liu Y., Zhang A., Wang F., Kong D., Li M., Bi J., Zhang F., Wang J., Luo X., Pan Z., Yu X., Liu G., Luo L.	Fine mapping a quantitative trait locus, qSER-7, that controls stigma exsertion rate in rice (Oryza sativa L.).	Rice (N Y)	12(1)	46	2019	LCD1	NRAMP5, OsNRAMP5, OsNramp5, OsLCD1
47324	31320586	Zhang Y., Xiong Y., Liu R., Xue H.W., Yang Z.	The Rho-family GTPase <i>OsRac1</i> controls rice grain size and yield by regulating cell division.	Proc. Natl. Acad. Sci. U.S.A.	116(32)	16121-16126	2019	CYCA3;1,DSG1,H1,_,RAC1,_,CYCA3;2	CycA3;1, CycA3;os;1, Orysa;CycA3;1, CYCA2.2,OsMAPK6, MAPK6, OsMPK6, OsSIPK, SIPK, OsMAPK1, MAPK1, MPK1, OsMPK1, MPK6, OsDSG1,OsH1, OsHis1.1, His1.1,OsWD40-83, WD40-83, OsCDT2, CDT2,  OsDWD58, DWD58,OsRAC1, OsRac1, Os Rac1, Rac1, Os-Rac1,MAPK, MAPK6,OsCYCA3;2, CycA3;2, CycA3;os;2, Orysa;CycA3;2, CYCA2.1, CYCA2;1
47325	31349588	Khan M.U., Li P., Amjad H., Khan A.Q., Arafat Y., Waqas M., Li Z., Noman A., Islam W., Wu L., Zhang Z., Lin W.	Exploring the Potential of Overexpressed <i>OsCIPK2</i> Rice as a Nitrogen Utilization Efficient Crop and Analysis of Its Associated Rhizo-Compartmental Microbial Communities.	Int J Mol Sci	20(15)		2019	CIPK02	OsCIPK02, CIPK2, OsCIPK2, OsSnRK3.26, SnRK3.26
47326	31359264	Chen X., Chen Y., Zhang L., He Z., Huang B., Chen C., Zhang Q., Zuo S.	Amino acid substitutions in a polygalacturonase inhibiting protein (OsPGIP2) increases sheath blight resistance in rice.	Rice (N Y)	12(1)	56	2019	PGIP1,PGIP2	Ospgip1, pgip1, OsPGIP1,Ospgip2, pgip2, OsPGIP2
47327	31306913	Kariya K., Murata K., Kokubo Y., Ube N., Ueno K., Yabuta Y., Teraishi M., Okumoto Y., Mori N., Ishihara A.	Variation of diterpenoid phytoalexin oryzalexin A production in cultivated and wild rice.	Phytochemistry	166	112057	2019		
47328	31283885	Jiang W., Shi W., Ma X., Zhao J., Wang S., Tan L., Sun C., Liu F.	Identification of microRNAs responding to cold stress in Dongxiang common wild rice.	Genome	62(9)	635-642	2019		
47329	31330237	Choura M., Ebel C., Hanin M.	Genomic analysis of intrinsically disordered proteins in cereals: From mining to meaning.	Gene	714	143984	2019		
47330	31330117	Kumar K., Neelam K., Singh G., Mathan J., Ranjan A., Brar D.S., Singh K.	Production and cytological characterization of a synthetic amphiploid derived from a cross between <i>Oryza sativa</i> and <i>Oryza punctata</i>.	Genome	62(11)	705-714	2019		
47331	31346065	Maeda H., Murata K., Sakuma N., Takei S., Yamazaki A., Karim M.R., Kawata M., Hirose S., Kawagishi-Kobayashi M., Taniguchi Y., Suzuki S., Sekino K., Ohshima M., Kato H., Yoshida H., Tozawa Y.	A rice gene that confers broad-spectrum resistance to beta-triketone herbicides.	Science	365(6451)	393-396	2019	HSL3,2ODD27,HSL5,2ODD13,HIS1,HSL4,HSL6	OsHSL3,2-ODD27, Os2-ODD27, Os2ODD27, OsHSL2, HSL2,OsHSL5,2-ODD13, Os2-ODD13, Os2ODD13, OsHSL1, HSL1,2-ODD12, Os2-ODD12, Os2ODD12, 2ODD12, OsHIS1,OsHSL4,OsHSL6
47332	31405986	Liu M., Zhang S., Hu J., Sun W., Padilla J., He Y., Li Y., Yin Z., Liu X., Wang W., Shen D., Li D., Zhang H., Zheng X., Cui Z., Wang G.L., Wang P., Zhou B., Zhang Z.	Phosphorylation-guarded light-harvesting complex II contributes to broad-spectrum blast resistance in rice.	Proc. Natl. Acad. Sci. U.S.A.	116(35)	17572-17577	2019	AOS2,PR10A,RBOHB,PR1A,CP26,RBOHC,_	OsAOS2, CYP74A2, OsAOS, OsAOS1,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,rbohB, OsrbohB, Os rbohB, OsRbohB, OsNox1, Nox1, Os-RbohB, RbohB, OsRboh1, Rboh1,OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1, OsPR1b, PR1alpha, OsPR1alpha,ASCAB9-A, OsCP26, Lhcb5, LHCB5, OsLHCB5,rbohC, OsrbohC, Os rbohC, OsRbohC, OsNox5, Nox5, OsrbohD, OsRboh5, RBOHA, OsRboh5, Rboh5,Lox2:Os:1, OsLOX9, LOX9, OsLOX8, LOX8, OsLOX2, LOX2, OsRLL, OsHI-LOX, HI-LOX, RLL2 LOX, RLL2, Lox2osPil, OsLOX2;1, LOX2;1, OsLOX1, OsLOX7, LOX7
47333	31451649	Wang L., Zhao L., Zhang X., Zhang Q., Jia Y., Wang G., Li S., Tian D., Li W.H., Yang S.	Large-scale identification and functional analysis of <i>NLR</i> genes in blast resistance in the Tetep rice genome sequence.	Proc. Natl. Acad. Sci. U.S.A.	116(37)	18479-18487	2019		
47334	31454543	Ahmad F., Farman K., Waseem M., Rana R.M., Nawaz M.A., Rehman H.M., Abbas T., Baloch F.S., Akrem A., Huang J., Zhang H.	Genome-wide identification, classification, expression profiling and DNA methylation (5mC) analysis of stress-responsive ZFP transcription factors in rice (Oryza sativa L.).	Gene	718	144018	2019		
47335	31428119	Jiang M., Liu Y., Li R., Zheng Y., Fu H., Tan Y., M?ller IM., Fan L., Shu Q., Huang J.	A Suppressor Mutation Partially Reverts the <i>xantha</i> Trait <i>via</i> Lowered Methylation in the Promoter of <i>Genomes Uncoupled 4</i> in Rice.	Front Plant Sci	10	1003	2019	GUN4	OsGUN4
47336	31416828	Song Y., Li G., Nowak J., Zhang X., Xu D., Yang X., Huang G., Liang W., Yang L., Wang C., Bulone V., Nikoloski Z., Hu J., Persson S., Zhang D.	The Rice actin-binding protein RMD Regulates Light-Dependent Shoot Gravitropism.	Plant Physiol.	181(2)	630-644	2019	BUI1,PIN1B,PIL16,PIL15	BUI1, FH5, FH5/BUI1, RMD, OsRMD, OsFH5, FH5/RMD ,PIN1A, OsPIN1A, OsPIN1a, REH1, OsPIN1, OsPIN1b, REH1/OsPIN1,APG, OsPIL16, OsbHLH106,OsPIL15, OsbHLH105, PIF3, OsPIF3
47337	31521225	Yang C., Liu X., Li D., Zhu X., Wei Z., Feng Z., Zhang L., He J., Mou C., Jiang L., Wan J.	OsLUGL is involved in the regulating auxin level and OsARFs expression in rice (Oryza sativa L.).	Plant Sci.	288	110239	2019	YUCCA1,_,MADS24,RAP1B,MADS18,RAP1A,GH3-8	OsYUCCA1, OsYUC1, YUC1,OsWD40-17, OsLUGL, LUGL, KKX, OsKKX,OsMADS24, MADS8, OsMADS8, OsMADS8/24 ,MADS14, OsMADS14, FDRMADS6, RMADS211, AGL10,OsMADS18, MADS2, OsMADS2, MADS28, OsMADS28, FDRMADS7, OsMADS18/28,OsMADS15, FDRMADS3, RMADS215, MADS15, DEP,OsGH3-8, OsMGH3, OsGH3.8, GH3.8, OsGH3-2
47338	31398900	Chen S., Zhao H., Luo T., Liu Y., Nie X., Li H.	Characteristics and Expression Pattern of <i>MYC</i> Genes in <i>Triticum aestivum</i>, <i>Oryza sativa</i>, and <i>Brachypodium distachyon</i>.	Plants (Basel)	8(8)		2019	PS,_,_,TDR,BHLH9,PA,BHLH10	Ra*, bhlh13, OsbHLH013, OsbHLH13, Ra, OSB1, Ra1, OsGL3A, GL3A, OsB2, OsMYC7, MYC7, OsPs, Ps, OsHLH1, HLH1,OsbHLH008, bHLH008, OsMYL2, MYL2, DLN6, OsDLN6, OsMYC1, MYC1,OsbHLH149, bHLH149, DLN30, OsDLN30, OsMYC4, MYC4,tdr, OsbHLH005, bHLH005, OsbHLH5, bhlh5, TDR1, OsTDR, OsTDR1, OsMYC5, MYC5,OsbHLH009, bHLH009, OsMYC2, MYC2,OsbHLH015, OsbHLH15, bHLH15, OsGL3B, GL3B, OsMYC6, MYC6, OsPa, Pa, OsHLH2, HLH2,OsICE1, ICE1, OsbHLH010, bHLH010, OsMYL1, MYL1, bHLH116, OsMYC3, MYC3 
47339	31380565	Yu B., Liu L., Wang T.	Deficiency of very long chain alkanes biosynthesis causes humidity-sensitive male sterility via affecting pollen adhesion and hydration in rice.	Plant Cell Environ.	42(12)	3340-3354	2019		
47340	31444468	Wang J., Liu X., Zhang A., Ren Y., Wu F., Wang G., Xu Y., Lei C., Zhu S., Pan T., Wang Y., Zhang H., Wang F., Tan Y.Q., Wang Y., Jin X., Luo S., Zhou C., Zhang X., Liu J., Wang S., Meng L., Wang Y., Chen X., Lin Q., Zhang X., Guo X., Cheng Z., Wang J., Tian Y., Liu S., Jiang L., Wu C., Wang E., Zhou J.M., Wang Y.F., Wang H., Wan J.	A cyclic nucleotide-gated channel mediates cytoplasmic calcium elevation and disease resistance in rice.	Cell Res.	29(10)	820-831	2019	RLCK185,CERK1,RLCK176,NAC4,FLS2,PAL1,CDS1,RLCK55	OsRLCK185,OsCERK1, OsLysM-RLK9, Os-CERK1, Os-LysM-RLK9, OsLysMRLK9, OsCERK1/OsLYK9, OsLYK9, LYK9,OsRLCK176,OsNAC4, NAC68, ONAC068, OnNAC4*, OnNAC4, OsNAC4/ONAC068,Os-FLS2, OsFLS2, OsCLV2f, CLV2f,OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6,OsCNGC15, CNGC15, OsCNGC9, CNGC9, OsCDS1,OsRLCK55
47341	31396773	Li Y., Yang Y., Liu Y., Li D., Zhao Y., Li Z., Liu Y., Jiang D., Li J., Zhou H., Chen J., Zhuang C., Liu Z.	Overexpression of OsAGO1b Induces Adaxially Rolled Leaves by Affecting Leaf Abaxial Sclerenchymatous Cell Development in Rice.	Rice (N Y)	12(1)	60	2019	TCP21,SRL2,ARF14,ETT2,SH1,LF1,PCF8,HOX9,YAB1,PCF6,ARF3,PNH1,ARF2,HOX29,RL9,ETT1,HOX33,YAB7,AGO1B,PCF7	OsTCP21,NRL2, OsSRL2, OsNRL2,OsARF14, OsETT4, ETT4, DLN153, OsDLN153, OsARF3la, ARF3la,OsARF2, ARF2, OsETT2, ARF3a, OsARF3a, DLN16, OsDLN16, ARF3,YAB2, OsYAB2, OsSh1, Sh1, OsFIL2, OsSH1, Osh1,HOX10, Oshox10, OsHox10, OsHB1, HB1, OSHB1, LF1/OsHB1, OsLF1, OsHDZ9, OsHDZIP9, HDZ9, HDZIP9,OsPCF8,Oshox9, OsHox9, OsHB2, HB2, OSHB2, OsHDZ37, OsHDZIP37, HDZ37, HDZIP37,OsYAB1, FIL1, osFIL1,OsPCF6,OsARF3, ETT3, Os ETT3, OsETT3, DLN20, OsDLN20, ARF4, OsARF3lb, ARF3lb,OsPNH1,OsARF2, OsARF4, ARF4,Oshox29, OsHox29, OSHB5, HB5,rl9, SLL1/RL9, SLL1, OsSLL1, OsADD1, ADD1, KANADI1, AH2, OsAH2, CL1, OsCL1,OsARF15, ARF15, OsETT1, ARF3b, OsARF3b, OsARF3-1, ARF3-1, OsARF3, ARF3, DLN154, OsDLN154,Oshox33, OsHox33, OSHB3, HB3, SIP22, OsSIP22, OsHDZ40, OsHDZIP40, HDZ40, HDZIP40,OsYAB7,OsAGO1b, AGO1b, AGO1-2 ,OsPCF7
47342	31428115	Basnet R., Zhang J., Hussain N., Shu Q.	Characterization and Mutational Analysis of a Monogalactosyldiacylglycerol Synthase Gene <i>OsMGD2</i> in Rice.	Front Plant Sci	10	992	2019	MGD2,MGD1,MGD3	OsMGD, MGD, OsMGD2, OsMGDG3, MGDG3,OsMGD1,OsMGD3
47343	31437207	Kong L., Duan Y., Ye Y., Cai Z., Wang F., Qu X., Qiu R., Wu C., Wu W.	Screening and analysis of proteins interacting with OsMADS16 in rice (Oryza sativa L.).	PLoS ONE	14(8)	e0221473	2019	6PGDH1,_,SLG,MADS4,_,MADS2,RPT4A,EBL1,SPW1,PP2C9,_	Os6PGDH1, Os6PGDH, 6PGDH,OsbHLH040, bHLH40,OsSLG,OsMADS4, PI1, DLN140, OsDLN140,OsCOP9, COP9,OsMADS2, RMADS219, NMADS1, PI2, nmads1, DLN33, OsDLN33,OsRpt4a, Rpt4a,qSSR8, OsEBL1, ES43, OsPHD37, PHD37,SPW1, spw1, MADS16, OsMADS16,OsPP15, PP15, OsPP2C09, PP2C09, OsPP2C9, OsPP2C3,UN1
47344	31020332	Chen X., Jiang L., Zheng J., Chen F., Wang T., Wang M., Tao Y., Wang H., Hong Z., Huang Y., Huang R.	A missense mutation in Large grain size 1 increases grain size and enhances cold tolerance in rice.	J. Exp. Bot.	70(15)	3851-3866	2019	MIR396C,MIR396E,MIR396I,MIR396F,MIR396D,MIR396H,GIF2,GIF1,MIR396B,GS2,MIR396A,GIF3,MIR396G	miR396c, osa-miR396c, osa-MIR396c, osa-miR396c-3p, osa-miR396c-5p, OsmiR396c,miR396e, osa-miR396e, osa-MIR396eosa-miR396e-3p osa-miR396e-5p,miR396i, osa-miR396i, osa-MIR396i,miR396f, osa-miR396f, osa-MIR396fosa-miR396f-3p osa-miR396f-5p,miR396d, osa-miR396d, osa-MIR396d,miR396h, osa-miR396h, osa-MIR396h,OsGIF2,OsGIF1,miR396b, osa-miR396b, osa-MIR396bosa-miR396b-3p osa-miR396b-5p, OsmiR396b,OsGRF4, GRF4, GS2/OsGRF4, PT2, GLW2, GS2/GL2, LGS1, OsLGS1,miR396a, osa-miR396a, osa-MIR396aosa-miR396a-3p osa-miR396a-5p, OsmiR396a,OsGIF3, OsGIF1, GIF1, MKB3,miR396g, osa-miR396g, osa-MIR396g
47345	31406182	Lam P.Y., Tobimatsu Y., Matsumoto N., Suzuki S., Lan W., Takeda Y., Yamamura M., Sakamoto M., Ralph J., Lo C., Umezawa T.	OsCAldOMT1 is a bifunctional O-methyltransferase involved in the biosynthesis of tricin-lignins in rice cell walls.	Sci Rep	9(1)	11597	2019	ROMT9	COMT, OsCOMT, ROMT-9, OsCOMT1, OsCAldOMT1, CAldOMT1, OsOMT, OsCOMT15, COMT15
47346	31417134	Chauhan P.S., Lata C., Tiwari S., Chauhan A.S., Mishra S.K., Agrawal L., Chakrabarty D., Nautiyal C.S.	Transcriptional alterations reveal Bacillus amyloliquefaciens-rice cooperation under salt stress.	Sci Rep	9(1)	11912	2019	_,RLCK310,NAC45,_,GRAM,SDRLK29,RLCK91	,OsRLCK310, LecRK, OsLecRK, SDK2, OsSDK2,ONAC045, ONAC45, DLN243, OsDLN243, OsNAM, NAM,OsBDG1, BDG1 ,OsGRAM,SRK, SDRLK-29, OsSDRLK-29, OsSDRLK29,OsPUB62, PUB62, OsRLCK91,  OsPUB62, PUB62
47347	31419944	Wang A., Pan L., Niu X., Shu X., Yi X., Yamamoto N., Li S., Deng Q., Zhu J., Liang Y., Wang L., Li P., Zheng A.	Comparative secretome analysis of different smut fungi and identification of plant cell death-inducing secreted proteins from Tilletia horrida.	BMC Plant Biol.	19(1)	360	2019	_,LAC11	40SRPS, OsRbs5, Rbs5,Lac, OsLAC11, LAC10, OsLAC10
47348	31389120	Mao C., He J., Liu L., Deng Q., Yao X., Liu C., Qiao Y., Li P., Ming F.	OsNAC2 integrates auxin and cytokinin pathways to modulate rice root development.	Plant Biotechnol. J.	18(2)	429-442	2020	RR3,IAA31,GH3-6,YUCCA6,TIL1,RR11,YUCCA5,ARF6B,LC1,CDKB;1,RR23,WOX11,HST1,GH3-8,CRL1,IPT3,IAA9,CDC2-2,CDC2-1,PLT8,IPT5,CRL4,CKX5,RR1,CKX4,LOGL3,RR4	OSRR3, OsRR3, rr3, Rra7, OsRRA7,OsIAA3, IAA3, OsIAA31, OsIAA30, IAA30,OsGH3-6, OsGH3.6, GH3.6,OsYUCCA6, OsYUC6, YUC6,NAC2, OsNAC2, ONAC004, ONAC4, ONAC034, ONAC34, ONAC058, ONAC58, OMTN2, Ostil1, OsNAC2/ONAC004, OsORE1.2, DLN113, OsDLN113,OsRR11, Rra8, OsRRA8, RR8,OsYUCCA5, OsYUC5, YUC5,OsARF6b, OsARF25, ARF25,OsGH3-1, GH3-1, OsGH3.1,GH3.1, OsLC1,CDKB;1, Orysa;CDKB;1, CDKB1;1, Orysa;CDKB1;1, OsCDKB1.1, CDKB1.1, OsCDKB1;1,OsRR23, Rrb5, Orr3, OsRR18, RR18, OsRRB5,OsWOX11, Os WOX11, OsWOX12A,RR22, OsRR22, Rrb4, Orr2, OsRR20, OsRRB4, OsHST1,OsGH3-8, OsMGH3, OsGH3.8, GH3.8, OsGH3-2,crl1, crl1*, ARL1, ARL1/CRL1, OsLBD3-2, LBD3-2, OsCRL1,OsIPT3,OsIAA9, OsIAA2,cdc2Os-2, CDC2Os-2, CDKA-2, CDKA;2, Orysa;CDKA;2, Rcdc2-2, OsCDKA;2, OsCDKA2, CDKA2, CDKA;1, OsCDKA;1, CDC20S-2, OsCDC20S-2,cdc2Os-1, CDC2Os-1, CDKA-1, CDKA;1, Orysa;CDKA;1, OsCDKA;1, cdc2Os1, Rcdc2-1, OsCDKA1, CDKA1, CDC20S-1, OsCDC20S-1 ,OsPLT8, CRL5, OsCRL5, AP2/EREBP141, AP2/EREBP#141 ,OsIPT5,OsGNOM1, GNOM1, CRL4/GNOM1, CRL2/CRL3,OsCKX5, ckx5,rr1, OsRR1, Rra9, OsRRA9,OsCKX4, ckx4, OsSCRM, OsSCRM2, SCRM, SCRM2,OsLOGL3,rr4, OsRR4, Rra3, OsRRA3
47349	31521222	Raza Q., Riaz A., Sabar M., Atif R.M., Bashir K.	Meta-analysis of grain iron and zinc associated QTLs identified hotspot chromosomal regions and positional candidate genes for breeding biofortified rice.	Plant Sci.	288	110214	2019		
47350	31390771	Miyamoto M., Shimao S., Tong W., Motose H., Takahashi T.	Effect of Thermospermine on the Growth and Expression of Polyamine-Related Genes in Rice Seedlings.	Plants (Basel)	8(8)		2019	SAMDC2,PAOB,_,_,_,PAOA,YSL16,ACL5,HOX29,PAO4,HB4,PAO3	SamDC2, AdoMetDC2, OsSAMDC2,PAOb, OsPAOb, OsPAO6, OsPAO2, PAO6, PAO2,OsbHLH180, bHLH180, OsSACL3C, SACL3C,OsbHLH139, bHLH139, OsSACL3B, SACL3B,OsbHLH138, bHLH138, OsPIF4, PIF4, OsSACL2, SACL2,PAOa, OsPAO2, PAO2, OsPAOa,OsYSL16, Os-YSL16, OsYs14 ,OsACL5,Oshox29, OsHox29, OSHB5, HB5,OsPAO4, OsAO1, AO1,OSHB4, OsHox32, HOX32, OsHB4, Oshox32, PHB3, OsHDZ13, OsHDZIP13, HDZ13, HDZIP13,OsPAO3, OsAO3, AO3
47351	31399805	Ji H., Han C.D., Lee G.S., Jung K.H., Kang D.Y., Oh J., Oh H., Cheon K.S., Kim S.L., Choi I., Baek J., Kim K.H.	Mutations in the microRNA172 binding site of SUPERNUMERARY BRACT (SNB) suppress internode elongation in rice.	Rice (N Y)	12(1)	62	2019	LAC4,EXPB17,CCR24,XTH1,GA2OX3,SNB,ONI1,DSH1,GNP1,CKX9	Oslacc, lacc, OsLAC4, OsLAC17, LAC17,OsEXPB17,OsCCR24,OsXTH1,OsGA2ox3, ga2ox 3, OsGA2ox-3, GA2ox3, GA2ox-3, GA2ox4,AP2/EREBP#073, AP2/EREBP73, AP2-3, OsAP2-3, SSH1, OsSSH1, OsSNB, DLN181, DLN181a, DLN181b, OsDLN181, OsDLN181a, OsDLN181b, SUI4, OsSUI4, SUI4/SNB,OsONI1, FDH, OsCUT4, CUT4, OsKCS7, KCS7,OsDSH1,GA20OX1, OsGA20ox1, 20ox1, GA20ox-1, ga20ox1, Os20ox, C20OX2, OsGA20ox2, OsGA20ox-1, GA20ox1, OsGNP1,OsCKX9
47352	31388828	Yang W., Zhang B., Qi G., Shang L., Liu H., Ding X., Chu Z.	Identification of the phytosulfokine receptor 1 (OsPSKR1) confers resistance to bacterial leaf streak in rice.	Planta	250(5)	1603-1612	2019	PSKR1,PSKR2,PSKR3	OsPSKR1, OsPSKR10, PSKR10,OsPSKR2, OsPSKR11, PSKR11,OsPSKR3, OsPSKR15, PSKR15
47353	31375941	Das P., Lakra N., Nutan K.K., Singla-Pareek SL., Pareek A.	A unique bZIP transcription factor imparting multiple stress tolerance in Rice.	Rice (N Y)	12(1)	58	2019	YGL10,P5CS,CATB,CAB1R,ONAC2,HSP90,APX1,BZIP3,HSFA2D,ERF33,SODA1	CAO, OsCAO, CAO1, OsCAO1, Oslls1, Lls1, DVR, PGL,OsP5CS, P5CS1, OsP5CS1, OsALDH18B1, ALDH18B1, OsP5CS-1, P5CS-1,CatB, CAT-B, OsCatB, OsCATB, OsCAT1B, CAT1B, CAT2, OsCAT2,cab1R, LHCP, CAB, OsLhcb1, Lhcb1, Cab1, OsCAB1, Lhcb1b, OsLhcb1b, CAB2R,SNAC1, snac1, OsNAC9, ONAC002, ONAC2, ONAC033, ONAC33, ONAC043, ONAC43, ONAC044, ONAC44, OsNAC19, NAC19, SNAC1/ONAC002, OsSNAC1, OsNAC9, OsNAC1,OsHsp90, rHSP90, OsHSP90, GRP94, OsGRP94,OsAPX1, APXa, OsAPXa, OsAPx01, OsAPx1, OSAPX1, APx1, cAPX, APX2, cAPXa, OscAPXa,OsbZIP03, OsbZIP3, OsHBP1b, HBP1b, OsTGA5, TGA5, OsTGA5/OsbZIP3,HSfA2d, OsHsfA2d, OsHsf-08, rHsf7, HSF08, OsHSF8, HSF8, HSF7, OsHSF7, OsHSFA2dI, OsHSFA2dII, OsHSFA2dIII, OsHsfA6b, HsfA6b, OsHsf2d, Hsf2d,OsERF#033, OsERF033, OsERF33, AP2/EREBP#040, AP2/EREBP40, OsDREB4-2,SodA1, OsSODA1, Mn-SOD, Mn- SOD, OsMSD, MnSOD, OsMnSOD, MnSOD1, OsMnSOD1
47354	31318448	He L., Chen X., Yang J., Zhang T., Li J., Zhang S., Zhong K., Zhang H., Chen J., Yang J.	Rice black-streaked dwarf virus-encoded P5-1 regulates the ubiquitination activity of SCF E3 ligases and inhibits jasmonate signaling to benefit its infection in rice.	New Phytol.	225(2)	896-912	2020	_,NH1,WRKY28,JAB1,WRKY10,PR1B,PR5,_,TIFY10C	OsMYB55/61, OsMYB55, MYB55, OsMYB61, MYB61, OsMYB61a, MYB61a, Os2R_MYB5, 2R_MYB5 ,OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2, DLN5, OsDLN5,  OsBTBA1, BTBA1,OsWRKY28, DLN170, OsDLN170,Osjab1, jab1, OsJAB1, CSN5, OsCSN5,OsCSN5A CSN5A, ,OsWRKY10,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1, OsPR1a, PR1a,OsPR5, Pir2, PR-5, PR5-1,OsCUL1, CUL1,OsJAZ7, JAZ7, OsJAZ 8, OsJAZ8, Os-JAZ8, JAZ8, OsTIFY10c, OsTIFY10c/OsJAZ8
47355	31034557	Yin X., Liu X., Xu B., Lu P., Dong T., Yang D., Ye T., Feng Y.Q., Wu Y.	OsMADS18, a membrane-bound MADS-box transcription factor, modulates plant architecture and the abscisic acid response in rice.	J. Exp. Bot.	70(15)	3895-3909	2019	MADS18,BZIP72,FC1,ABI5,RAP1A,BZIP39,BZIP23,OSH1,MADS57,BZIP12,D14,RAP1B	OsMADS18, MADS2, OsMADS2, MADS28, OsMADS28, FDRMADS7, OsMADS18/28,OsbZIP72, OsAREB2, OsABF4, ABF4, Osbzip72, OsABI5, ABI5,fc1, OsTB1, tb1, OsTB1/FC1, Os TB1, TB1, OsFC1, MP3, OsMP3,OsABI5, OsbZIP10, OsABF1, OREB1, OsABI5-1, OsABI5-2, OsOREB1, OREB1 ,OsMADS15, FDRMADS3, RMADS215, MADS15, DEP,OsbZIP39, bZIP39, DLN138, OsDLN138,OsbZIP23, OsAREB1, OsABF2, Osbzip23, OsAREB2, OsZIP23, ZIP23,OSKN1, Oskn1, OsKN1, OSH1/Oskn1, HB75,OsMADS57, MADS-57,OsbZIP12, OsABF1, ABF1, OsOSE2, OSE2, OsbZIP12/OsABF1,d14(d10), dwf13, d10, d14, D88, HTD2, OsHTD2, OsD14, qPPB3, D88/D14, HTD4,MADS14, OsMADS14, FDRMADS6, RMADS211, AGL10
47356	31570888	Li N., Lin B., Wang H., Li X., Yang F., Ding X., Yan J., Chu Z.	Natural variation in ZmFBL41 confers banded leaf and sheath blight resistance in maize.	Nat. Genet.	51(10)	1540-1548	2019		
47357	31481533	Chen Q., Yang C.J., York A.M., Xue W., Daskalska L.L., DeValk C.A., Krueger K.W., Lawton S.B., Spiegelberg B.G., Schnell J.M., Neumeyer M.A., Perry J.S., Peterson A.C., Kim B., Bergstrom L., Yang L., Barber I.C., Tian F., Doebley J.F.	TeoNAM: A Nested Association Mapping Population for Domestication and Agronomic Trait Analysis in Maize.	Genetics	213(3)	1065-1078	2019		
47358	31570620	Yano K., Morinaka Y., Wang F., Huang P., Takehara S., Hirai T., Ito A., Koketsu E., Kawamura M., Kotake K., Yoshida S., Endo M., Tamiya G., Kitano H., Ueguchi-Tanaka M., Hirano K., Matsuoka M.	GWAS with principal component analysis identifies a gene comprehensively controlling rice architecture.	Proc. Natl. Acad. Sci. U.S.A.	116(42)	21262-21267	2019	GID1,SPY,SLR1	gid1, OsGID1, Thl, Os GID1,OsSPY,slr1-1, slr1, slr, GAI, OsGAI, OsSLR1, Os SLR1, OsRGA1, OsGRAS-18, OsGRAS-18, GRAS-18, GRAS18, SLR-1
47359	31532784	Nogoy F.M., Jung Y.J., Kang K.K., Cho Y.G.	Physico-chemical characterization and transcriptome analysis of 5-methyltryptophan resistant lines in rice.	PLoS ONE	14(9)	e0222262	2019	ASA2,ASA1,_	OASA2 (=ASA2), OsASA2, OASA2, ASalpha2, OsASalpha2, OASA2,OASA1 (=ASA1), OsASA1, OASA1, OASA1(D323N), OASA1D,TS
47360	31768124	Hayashi N., Rongkavilit N., Tetsumura T., Sawa S., Wada T., Tominaga-Wada R.	Effect of the CLE14 polypeptide on <i>GLABRA2</i> homolog gene expression in rice and tomato roots.	Plant Biotechnol (Tokyo)	36(3)	205-208	2019	ROC9	Roc9(t), Roc9, GL2-9, OsGL2, GL2, OsHDZ2, HDZ2, OsHDZIP2, HDZIP2
47361	31407341	Ma F., Yang X., Shi Z., Miao X.	Novel crosstalk between ethylene- and jasmonic acid-pathway responses to a piercing-sucking insect in rice.	New Phytol.	225(1)	474-487	2020	EIL1A,FBOX316,_,AOS2	EIL1, OsEIL1, EIL1a, OsEIL1a, MHZ6/OsEIL1, MHZ6, OsMHZ6,OsFbox316, Fbox316, Os_F0624, OsEBF1, EBF1,  OsFBL30, FBL30,Lox2:Os:1, OsLOX9, LOX9, OsLOX8, LOX8, OsLOX2, LOX2, OsRLL, OsHI-LOX, HI-LOX, RLL2 LOX, RLL2, Lox2osPil, OsLOX2;1, LOX2;1, OsLOX1, OsLOX7, LOX7,OsAOS2, CYP74A2, OsAOS, OsAOS1
47362	31505900	Yuan Z., Fan K., Xia L., Ding X., Tian L., Sun W., He H., Yu S.	Genetic Dissection of Seed Storability and Validation of Candidate Gene Associated with Antioxidant Capability in Rice (<i>Oryza sativa</i> L.).	Int J Mol Sci	20(18)		2019	FAH2	OsFAH2
47363	31482329	Das S., Parida S.K., Agarwal P., Tyagi A.K.	Transcription factor OsNF-YB9 regulates reproductive growth and development in rice.	Planta	250(6)	1849-1865	2019		
47364	31548267	Duan Y., Chen Y., Li W., Pan M., Qu X., Shi X., Cai Z., Liu H., Zhao F., Kong L., Ye Y., Wang F., Xue Y., Wu W.	<i>RETINOBLASTOMA-RELATED</i> Genes Specifically Control Inner Floral Organ Morphogenesis and pollen Development in Rice.	Plant Physiol.	181(4)	1600-1614	2019	RB1,MADS24,MSI1,TDR,SL1,PAP2,MADS4,SPW1,MADS58,DL,RAG,MADS2,MADS7,PIS1,EAT1,C6	Orysa;Rb1, OsRBR1, RBR1, OsRBR2, RBR2,OsMADS24, MADS8, OsMADS8, OsMADS8/24 ,OsWD40-79, OsMSI1, WD40-79,  OsDWD1, DWD1,tdr, OsbHLH005, bHLH005, OsbHLH5, bhlh5, TDR1, OsTDR, OsTDR1, OsMYC5, MYC5,sl1(t), sl1, stl1, opb, OPB1, ps, PS, OPB, DLN2, OsDLN2, OsJAG, JAG, OsJAG.1, OsJAG.2, ZOS1-02, OsZOS1-02,MADS34, OsMADS34, RMADS212/RMADS217/RMADS221, OsPAP2/MADS34, MADS34/PAP2, PAP2/OsMADS34, OsMADS34/PAP2, OsMADS19,OsMADS4, PI1, DLN140, OsDLN140,SPW1, spw1, MADS16, OsMADS16,OsMADS58,OsDL, dl(lop), lop, dl, dl1, OsDRPq3, DRPq3,MADS3, OsMADS3, OsMADS3(t), RMADS222, RAG1, rf3,OsMADS2, RMADS219, NMADS1, PI2, nmads1, DLN33, OsDLN33,OsMADS7, OsMADS45, FDRMADS1, RMADS216, AGL6, M79, MADS45, Os MADS7, Os MADS45, OsMADS7/45,Orysa;Rb2, RBR2, OsRBR1, RBR1, OsPIS1, RB2, OsRB2, RB1, OsRB1,OsEAT1, OsbHLH141, EAT1/DTD1, bHLH141, DTD1, DTD, DLN120, OsDLN120,Osc6, Osg6B, OsG6B, OsLTPG25, OsLTPg25, OsLtpVII.1, Os C6
47365	31541388	Han S., Lee J.Y., Lee Y., Kim T.H., Lee S.	Comprehensive survey of the VxGPhiL motif of PP2Cs from Oryza sativa reveals the critical role of the fourth position in regulation of ABA responsiveness.	Plant Mol. Biol.	101(4-5)	455-469	2019		
47366	31553788	Zhen X., Xu F., Zhang W., Li N., Li X.	Overexpression of rice gene OsATG8b confers tolerance to nitrogen starvation and increases yield and nitrogen use efficiency (NUE) in Arabidopsis.	PLoS ONE	14(9)	e0223011	2019	ATG8B	OsATG8b, Atg8b
47367	31484390	Wu R., Shi Y., Zhang Q., Zheng W., Chen S., Du L., Lu C.	Genome-Wide Identification and Characterization of the UBP Gene Family in Moso Bamboo (<i>Phyllostachys edulis</i>).	Int J Mol Sci	20(17)		2019		
47368	31491808	Zhou H., Wang X., Huo C., Wang H., An Z., Sun D., Liu J., Tang W., Zhang B.	A Quantitative Proteomics Study of Early Heat-Regulated Proteins by Two-Dimensional Difference Gel Electrophoresis Identified OsUBP21 as a Negative Regulator of Heat Stress Responses in Rice.	Proteomics	19(20)	e1900153	2019		
47369	31437323	Guo Z.H., Haslam R.P., Michaelson L.V., Yeung E.C., Lung S.C., Napier J.A., Chye M.L.	The overexpression of rice ACYL-CoA-BINDING PROTEIN2 increases grain size.and bran oil content in transgenic rice.	Plant J.	100(6)	1132-1147	2019	ACBP2	OsACBP2
47370	31135055	Shim Y., Kang K., An G., Paek N.C.	Rice DNA-Binding One Zinc Finger 24 (OsDOF24) Delays leaf senescence in a Jasmonate-Mediated Pathway.	Plant Cell Physiol.	60(9)	2065-2076	2019		
47371	31552078	Liang S., Xiong W., Yin C., Xie X., Jin Y.J., Zhang S., Yang B., Ye G., Chen S., Luan W.J.	Overexpression of <i>OsARD1</i> Improves Submergence, Drought, and Salt Tolerances of Seedling Through the Enhancement of Ethylene Synthesis in Rice.	Front Plant Sci	10	1088	2019	NCED3,ERF91,SALT,BZIP23,ERF3,NCED2,PP2C1,SIP2,ACS2,ACS4	OSNCED3, OsNCED-3, OsNCED3, OsNCED3a, NCED3a, OsNCED4, NCED4, OsNECD2, OsNCED2b, NCED2b ,OsERF#091, OsERF091, OsERF91, AP59, OsAP59, AP2/EREBP#147, AP2/EREBP147, OsBIERF3, BIERF3,salT*(sal1), SalT1*, sal1, Sal1, SALT, ML, SalT, OsSalT, OsJRL, JRL, Osl43, OsL43, OsMBL1, MBL1, OsJRL01, JRL01, OsJRL1, JRL1,OsbZIP23, OsAREB1, OsABF2, Osbzip23, OsAREB2, OsZIP23, ZIP23,AP37, OsAP37, OsERF3, OsERF#075, OsERF075, OsERF75, ERF75, AP2/EREBP#004, AP2/EREBP4, OsBIERF2, BIERF2, DLN23, OsDLN23,OSNCED2, OsNCED2, OsNCED5, NCED5,OsPP2C1, OsSIPP2C1, SIPP2C1, OsPP2C68, PP2C68, OsPP108,Sip2, OsARD1, ARD1, OsIDI1, IDI1, OsIDI1L/OsARD1,OsACS2, Os-ACS2,OsACS4, OS-ACS4
47372	31623772	Hoang T.V., Vo K.T.X., Rahman M.M., Choi S.H., Jeon J.S.	Heat stress transcription factor OsSPL7 plays a critical role in reactive oxygen species balance and stress responses in rice.	Plant Sci.	289	110273	2019	_,ANR3,WRKY45,SPL7,DJC22,CYP93G2,WRKY76,_,TPS29,WRKY62,_,WRKY7,_	,OsANR3,OsWRKY45, OsWRKY45-1, OsWRKY45-2, WRKY45-1, WRKY45-2,spl7, HSFA4D, HSF10, HSF15, OsHSF15, SP17, OsHsf-15, rHsf10, OsHsfA4d, HSfA4d, lrd13, HSF1,OsDjC22, DjC22,OsCYP93G2, OsF2H, F2H, OsCYP71S1, CYP71S1,OsWRKY76, OsWRKY76.1, OsWRKY76.2, OsWRKY76.3,IBP,OsTPS29, OsCAS, CAS, OsTPS3, TPS3, TPS33, OsTPS33,OsWRKY62, OsWRKY62.1, OsWRKY62.2, XB10, OsWRKY62-1, OsWRKY62-2,,OsWRKY7,IBP
47373	31512008	Liu L.D., Hsiao Y.C., Chen H.C., Yang Y.W., Chang M.C.	Construction of gene causal regulatory networks using microarray data with the coefficient of intrinsic dependence.	Botanical Studies	60(1)	22	2019		
47374	31533628	Zhang W., Sheng J., Xu Y., Xiong F., Wu Y., Wang W., Wang Z., Yang J., Zhang J.	Role of brassinosteroids in rice spikelet differentiation and degeneration under soil-drying during panicle development.	BMC Plant Biol.	19(1)	409	2019	CSA,MPG1,MDHAR3,D11,DHAR1,G1L5,APX1,APX2,RFL	csa, OsCSA,OsMPG1, OsVTC1-1, VTC1-1,MDHAR, OsMDHAR, OsMDAR3, MDAR3, OsMDHAR3, MDHAR1, OsMDHAR1,d11(d8), dwf10, d8, D11/CYP724B1, d11, CYP724B1, GNS4, OsD11, PMM1, OsPMM1, PMM1/D11, NBG4, OsCPB1, CPB1, CPB1/D11,OsDHAR1, DHAR, cytDHAR, OscytDHAR, OsDHAR,OsG1L5, TAW1, OsTAW1,OsAPX1, APXa, OsAPXa, OsAPx01, OsAPx1, OSAPX1, APx1, cAPX, APX2, cAPXa, OscAPXa,OsAPX2, OsAPx02, APXb, OsAPx2, OSAPX2, APx2, cAPX, OsAPX1, APX1,RFL, OSL, FL, APO2, APO2/RFL, SSC, SSC/RFL/APO2, OsRFL, OsFL, OsAPO2, OsSSC
47375	31524055	Fu S., Huang J., Chen Z., Xia J.	C2 domain plays critical roles in localization of novel C2 domain-containing protein OsC2DP.	Plant Signal Behav	14(11)	1667208	2019		
47376	31502560	Bian H., Zhang L., Chen L., Wang W., Ji H., Dong H.	Real-time monitoring of translocation of selected type-III effectors from <i>Xanthomonas oryzae</i> pv. <i>oryzae</i> into rice cells.	J. Biosci.	44(4)		2019	XA13,PIP1;3,XA10	xa13, Xa13, Os8N3, Os-8N3, 8N3, OsSWEET11, SWEET11, OsSWEET11/Xa13, Xa13/Os8N3/SWEET11, Os8N3/Xa13, OsSWEET11/Os8N3, OsSWEET11a, SWEET11a,OsPIP1;3. PIP1.3, PIP1-3, RWC3, RWC-3, OsPIP1-3,Xa10, Xa-10
47377	31469486	Zhao J., Wang S., Qin J., Sun C., Liu F.	The lipid transfer protein OsLTPL159 is involved in cold tolerance at the early seedling stage in rice.	Plant Biotechnol. J.	18(3)	756-769	2020	_,ALDH7	OsLTP2.11, OsLtpII.11, LTP2.11, LtpII.11, OsLTPL159, LTPL159,OsALDH7, osaldh7, LDH, ALDH7B7, OsALDH7B6, ALDH7B6, OsAnt1, Ant1
47378	31552586	Kobayashi T., Ozu A., Kobayashi S., An G., Jeon J.S., Nishizawa N.K.	OsbHLH058 and OsbHLH059 transcription factors positively regulate iron deficiency responses in rice.	Plant Mol. Biol.	101(4-5)	471-486	2019	BHLH60,HRZ2,YSL15,TOM1,HRZ1,IRT1,BHLH59,NAS1,IRO2,YSL2,BHLH58	OsbHLH060, bHLH060, bHLH60, OsPRI1, PRI1, OsbHLH115, bHLH115,OsRFPH2-24, OsHRZ2, OsRING150, RING150, CLG1, OsCLG1,OsYSL15, OsYs7,OsTOM1, ZIFL4, OsZIFL4 ,OsHRZ1,  OsRING149, RING149,OsIRT1, ZIP10, OsZIP10, OsZIP12, ZIP12,OsbHLH059, bHLH059, OsbHLH59, bHLH59, OsPRI3, PRI3,OsNAS1,OsIRO2, OsbHLH056, bHLH056, bHLH56, OsbHLH56,OsYSL2, Os-YSL2, OsYs6 ,OsbHLH058, bHLH058, bHLH58, OsPRI2, PRI2
47379	31509970	Zhang Q., Shen L., Ren D., Hu J., Chen G., Zhu L., Gao Z., Zhang G., Guo L., Zeng D., Qian Q.	Characterization, Expression, and Interaction Analyses of <i>OsMORF</i> Gene Family in Rice.	Genes (Basel)	10(9)		2019	MORF2,MORF9,MORF8,MORF8A,MORF1,WSP1,MORF3	OsMORF2, OsMORF2a, MORF2a,OsMORF9,OsMORF8, OsMORF8b, MORF8b, OsMORF8-2, MORF8-2,MORF8-like, OsMORF8a, MORF8a, OsMORF8-1, MORF8-1,OsMORF1,OsWSP1, OsMORF2b, MORF2b, OsMORF2, OsMORF2/WSP1,OsMORF3
47380	31493565	Xu Z., Xu X., Gong Q., Li Z., Li Y., Wang S., Yang Y., Ma W., Liu L., Zhu B., Zou L., Chen G.	Engineering Broad-Spectrum Bacterial Blight Resistance by Simultaneously Disrupting Variable TALE-Binding Elements of Multiple Susceptibility Genes in Rice.	Mol Plant	12(11)	1434-1446	2019		
47381	31547575	Jan R., Khan M.A., Asaf S., Lee I.J., Kim K.M.	Metal Resistant Endophytic Bacteria Reduces Cadmium, Nickel Toxicity, and Enhances Expression of Metal Stress Related Genes with Improved Growth of Oryza Sativa, via Regulating Its Antioxidant Machinery and Endogenous Hormones.	Plants (Basel)	8(10)		2019	PCS1,MTP1,GSTZ1	OsPCS1, OsPCS2, PCS2, OsPCS15, PCS15,OsMTP1,OsGSTZ1, GSTZ-1
47382	31525461	Dwivedi N., Maji S., Waseem M., Thakur P., Kumar V., Parida S.K., Thakur J.K.	The Mediator subunit OsMED15a is a transcriptional co-regulator of seed size/weight-modulating genes in rice.	Biochim Biophys Acta Gene Regul Mech	1862(10)	194432	2019		
47383	31514343	Kapoor R., Kumar G., Arya P., Jaswal R., Jain P., Singh K., Sharma T.R.	Genome-Wide Analysis and Expression Profiling of Rice Hybrid Proline-Rich Proteins in Response to Biotic and Abiotic Stresses, and Hormone Treatment.	Plants (Basel)	8(9)		2019	_,_,_,_,HYPRP20,HYPRP18,HYPRP17,HYPRP16,_,_,HYPRP12,_,HYPRP2,_,HYPRP21,_,HYPRP24,HYPRP46,HYPRP28,HYPRP5,_,HYPRP8,_,HYPRP7,HYPRP19,HYPRP44,HYPRP9,HYPRP6,HYPRP43,_,HYPRP26,HYPRP45,HYPRP22,_,_,HYPRP33,HYPRP4,_,HYPRP11,PI9,HYPRP23,HYPRP15,HYPRP10,_,_	OsHyPRP17, HyPRP17,OsLLA3, LLA3, OsHyPRP15, HyPRP15,OsHyPRP7, HyPRP7,OsHyPRP3, HyPRP3,OsHyPRP20, HyP/GRP20, OsHyPRP41, HyPRP41,OsHyPRP18, HyP/GRP18, OsHyPRP39, HyPRP39,OsHyPRP17, HyP/GRP17, OsHyPRP38, HyPRP38,OsHyPRP16, HyP/GRP16, OsHyPRP37, HyPRP37,OsLLA8, LLA8, OsHyPRP27, HyPRP27,RCc3, OsHyPRP01, HyP/GRP01, OsHyPRP1, HyP/GRP1, OsRcc3, HyPRP1,OsHyPRP12, HyP/GRP12, OsHyPRP32, HyPRP32,OsLLA5, LLA5, OsHyPRP21, HyPRP21,OsHyPRP02, HyP/GRP02, OsHyPRP2, HyP/GRP2,HyPRP2,LTPG5, OsLTPG5, OsLTPg5, OsHyPRP10, HyPRP10,OsHyPRP21, HyP/GRP21, OsHyPRP42, HyPRP42,RCc2, RCg2, OsHyPRP13, HyP/GRP13, HyPRP13, OsRCg2, OsHyPRP35, HyPRP35,OsHyPRP24, HyPRP24,OsHyPRP46, HyPRP46,OsHyPRP28, HyPRP28,qLTG-3-1(t), qLTG3-1, OsHyPRP05, OsHyPRP5, HyP/GRP05, HyP/GRP5,OsHyPRP18, HyPRP18, OsHyPRP19, HyPRP19,OsHyPRP08, HyP/GRP08, OsHyPRP8, HyP/GRP8, OsHyPRP14, HyPRP14,OsLLA4, LLA4, OsHyPRP20, HyPRP20,OsHyPRP07, HyP/GRP07, OsHyPRP7, HyP/GRP7, OsHyPRP13, HyPRP13,OsHyPRP19, HyP/GRP19, OsHyPRP40, HyPRP40,OsHyPRP44, HyPRP44,OsHyPRP09, HyP/GRP09, OsHyPRP9, HyP/GRP9, OsHyPRP29, HyPRP29,OsHyPRP06, HyP/GRP06, OsHyPRP6, HyP/GRP6, OsHyPRP12, HyPRP12,OsHyPRP43, HyPRP43,OsHyPRP9, HyPRP9,OsHyPRP26, HyPRP26,OsHyPRP45, HyPRP45,OsHyPRP22, HyPRP22,OsHyPRP16, HyPRP16,OsLLA7, OsLTPG21, OsLTPg21, LLA7, LTPG21, LTPg21, OsHyPRP25, HyPRP25,OsHyPRP33, HyPRP33,OsHyPRP04, HyP/GRP04, OsHyPRP4, HyP/GRP4,OsHyPRP6, HyPRP6,OsHyPRP11, HyP/GRP11, OsHyPRP31, HyPRP31,Pi9(t), Pi9(t)*, Pi9, Pi-9(t),OsHyPRP23, HyPRP23,OsHyPRP15, HyP/GRP15, OsHyPRP36, HyPRP36,OsHyPRP10, HyP/GRP10, OsHyPRP30, HyPRP30,OsHyPRP8, HyPRP8,OsHyPRP11, HyPRP11
47384	31442349	Lee K., Park S.J., Colas des Francs-Small C., Whitby M., Small I., Kang H.	The coordinated action of PPR4 and EMB2654 on each intron half mediates trans-splicing of rps12 transcripts in plant chloroplasts.	Plant J.	100(6)	1193-1207	2019		
47385	31405333	Gupta M.K., Sharma V., Lenka S.K., Chinnusamy V.	<i>In silico</i> study revealed major conserve architectures and novel features of pyrabactin binding to <i>Oryza sativa</i> ABA receptors compare to the <i>Arabidopsis thaliana</i>.	J. Biomol. Struct. Dyn.		1-14	2019		
47386	31500108	Zhang Q., Shen L., Wang Z., Hu G., Ren D., Hu J., Zhu L., Gao Z., Zhang G., Guo L., Zeng D., Qian Q.	OsCAF1, a CRM Domain Containing Protein, Influences Chloroplast Development.	Int J Mol Sci	20(18)		2019	FGL,_,APX2,WP2,SODB,PSBA,RBCL,PSAA,ELL,NOE1,RPOB,SODA1,_,RPOC1,APX1,CATA,CAF1,WLP2,HSA1,HEMA,_,CRS2,CAB1R,CHLH,RPOC2,YGL1	fgl(fl), fl, fgl, OsFGL, OsPorB, PoPA, PORA, porA, OsPORA, PORB, OsPORB,atpE,OsAPX2, OsAPx02, APXb, OsAPx2, OSAPX2, APx2, cAPX, OsAPX1, APX1,TRXZ, OsPAP10, PAP10, OsPAP10/OsTRXz, OsTRXz, TRXz, OsTrx25, Trx25,SodB, Fe-SOD, Fe- SOD, OsFe-SOD, Fe+-SOD, OsFe+-SOD, OsFe-SODa, OsFe-SODb, OsFeSODb, FeSODb, OsFSD1.2, FSD1.2, FeSOD2, OsFSD2, FSD2, OsFSD1, FSD1, ALM1, OsALM1,PsbA, psbA, OsPsbA, PSBD1, OsPSBD1, psbD1,rbcL, rbcA, OsrbcL,PsaA, psaA, PsAA1, psaA1,chlI, OsChlI, ChlI, CHLI, OsCHLI, OsCHLI/ELL, OsELL,CATC, OsCat, OsCatC, OsCATC, OsNOE1, noe1, catC, OsCATC, CAT3, OsCAT3, LLM9428, OsLLM9428,rpoB, RpoB, Rpobeta,SodA1, OsSODA1, Mn-SOD, Mn- SOD, OsMSD, MnSOD, OsMnSOD, MnSOD1, OsMnSOD1,atpB, AtpB, atpcf1, ATPbeta,rpoC1, RPO beta', RPObeta', OsRPOC1,OsAPX1, APXa, OsAPXa, OsAPx01, OsAPx1, OSAPX1, APx1, cAPX, APX2, cAPXa, OscAPXa,CATA1, Cat A1*, OSCAT-A, Cat2, CatA1, CAT-A, OsCatA, OsCAT, CAT, catA, OSCATA, OsCATc, OsCATA, OsCAT1A, CAT1, OsCAT1, OsCATC, OsCAT2,OsCAF1,OsWLP2, OsFLN1, FLN1, HSA2,OsHSA1, OsFLN2, FLN2, HSA1/OsFLN2,HEMA1, OsHEMA, GluTR, OsHEMA1, hemA,atpA,OsCRS2,cab1R, LHCP, CAB, OsLhcb1, Lhcb1, Cab1, OsCAB1, Lhcb1b, OsLhcb1b, CAB2R,OsChlH, ChlH, OsCHLH,rpoC2, RPO beta", RPObeta",OsYGL1, CHLG, Ygl1, CS, OsCHLG
47387	31505875	Kim T., Kang K., Kim S.H., An G., Paek N.C.	OsWRKY5 Promotes Rice leaf senescence via Senescence-Associated NAC and Abscisic Acid Biosynthesis Pathway.	Int J Mol Sci	20(18)		2019	WRKY5,AMTR1,NCED2,NCED1,NYC3,NAC58,SGR,EAS1 ,TIL1,ICL,AGA1,NCED3	OsWRKY5 ,Osh36, OsH36, H36, OsAMTR1,OSNCED2, OsNCED2, OsNCED5, NCED5,OSNCED1, OsNCED-1, OsNCED3, OsNced3, NCED3, OsNCED9, NCED9,nyc3, OsNYC3, PPH,OsNAP, NAP, ONAC058, ONAC58, Os PS1, PS1, OsCTb1, CTb1,sgr(t), sgr, OsSGR, OsSgr, SGR1, OsSGR1,OsPAO, PAO, OsACD1, ACD1, OsEAS1, RCD2, OsRCD2,NAC2, OsNAC2, ONAC004, ONAC4, ONAC034, ONAC34, ONAC058, ONAC58, OMTN2, Ostil1, OsNAC2/ONAC004, OsORE1.2, DLN113, OsDLN113,OsEnS-107, EnS-107, OsI85, I85, OsICL, Osl85, l43, Osl43, OsL85,Osh69, h69, OsAGA1, OsRS6, RS6,OSNCED3, OsNCED-3, OsNCED3, OsNCED3a, NCED3a, OsNCED4, NCED4, OsNECD2, OsNCED2b, NCED2b 
47388	31552066	Yi J., Gao J., Zhang W., Zhao C., Wang Y., Zhen X.	Differential Uptake and Utilization of Two Forms of Nitrogen in <i>Japonica</i> Rice Cultivars From North-Eastern China.	Front Plant Sci	10	1061	2019	NRT2.1,GLN1;2,AMT1;3,_,AMT1;1,ABC1,GLT2,NRT2.2,GLT1,GDH1,GLN1;1	OsNRT2.1, OsNRT2.2,OsGLN1;2, GSr, RGS8, OsGS1;2, GS1;2, GS1, OsGS1-2, GS1-2, OsGS1.2, GS1.2,OsAMT1;3, AMT1-3, Osamt1-2, "OsAMT1,2", OsAMT1;2, OsAMT1.3, AMT1.2,OsNIA2, NIA2, OsNR2, NR2, OsNR3, NR3, OsNR1.2, NR1.2,OsAMT1;1, OsAMT1:1, OsAMT1, AMT1-1, AMT1, OsAMT1p, OsAMT1-1, Osamt1-1, "OsAMT1,1", OsAMT1.1, AMT1.1, FCO12,OsABC1, SPL32, OsSPL32, OsGLU, OsFd-GOGAT, Fd-GOGAT, ABC1/ OsFd-GOGAT ,OsGLT2, OsNADH-GOGAT2, NADH-GOGAT2, OsGOGAT2, GOGAT2, OsGLU2, GLU2,OsNRT2.2, OsNRT2.1,OsGLT1, OsNADH-GOGAT1, NADH-GOGAT1, OsNADH-GOGAT, GOGAT, NADH-GOGAT, OsGOGAT1, GOGAT1, OsGLU1,OsGDH1,OsGLN1;1, GS1, RGS28, OsGS1;1, GS1;1, OsGS, GS1, OsGS1, GLN1-1, OsGS1-1, GS1-1, GS1.1, OsGS1.1
47389	31179856	Kant R., Tyagi K., Ghosh S., Jha G.	Host Alternative NADH:Ubiquinone Oxidoreductase Serves as a Susceptibility Factor to Promote Pathogenesis of <i>Rhizoctonia solani</i> in Plants.	Phytopathology	109(10)	1741-1750	2019		
47390	31479093	Hwang J.E., Hwang S.G., Jung I.J., Han S.M., Ahn J.W., Kim J.B.	[PROVISIONAL] Overexpression of rice F-box protein OsFBX322 confers increased sensitivity to gamma irradiation in Arabidopsis.	Genet. Mol. Biol.			2019	_,IQM5,_,_,_	MRE11, OsMRE11,OsIQM5,OsFbox481, Os_F0362, FBX322, OsFBX322,  OsFBX322, FBX322,OsFbox472, Fbox472, Os_F0599, OsFBX313, FBX313,  OsFBX313, FBX313,CYP72A1, OsCYP72A1
47391	31529568	Zhong J., He W., Peng Z., Zhang H., Li F., Yao J.	A putative AGO protein, OsAGO17, positively regulates grain size and grain weight through OsmiR397b in rice.	Plant Biotechnol. J.			2019	MIR397B,LAC29,LAC8,AGO17	miR397b, osa-miR397b, osa-MIR397b, miR397b*, OsmiR397b, Os-MIR397b,OsLAC29,OsLAC8, OsLAC7, LAC7,OsAGO17
47392	31554292	Khrueasan N., Chutimanukul P., Plaimas K., Buaboocha T., Siangliw M., Toojinda T., Comai L., Chadchawan S.	Comparison between the Transcriptomes of 'KDML105' Rice and a Salt-Tolerant Chromosome Segment Substitution Line.	Genes (Basel)	10(10)		2019	_,NPH1B,IRO2,CML31	OS-PYDK, Ospdhk, PDHK, PDK, OsPDK, Ospdhk2, pdhk2 OsHRK1, HRK1,PHOT2, OsPHOT2, OsNPH1b, OsAGC9, AGC9,OsIRO2, OsbHLH056, bHLH056, bHLH56, OsbHLH56,OsCML31, OsMSR2, MSR2
47393	31575724	Watkins J.L., Li M., McQuinn R.P., Chan K.X., McFarlane H.E., Ermakova M., Furbank R.T., Mares D., Dong C., Chalmers K.J., Sharp P., Mather D.E., Pogson B.J.	A GDSL esterase/Lipase Catalyzes the Esterification of Lutein in Bread Wheat.	Plant Cell	31(12)	3092-3112	2019		
47394	31575723	Shen Q., Zhan X., Yang P., Li J., Chen J., Tang B., Wang X., Hong Y.	Dual Activities of Plant cGMP-dependent protein kinase and Its Roles in Gibberellin Signaling and Salt Stress.	Plant Cell	31(12)	3073-3091	2019	_,GAMYB,ABA1,CML10,CNX,POX1,PP23	,OsGAMYB, GAM1, OsGAMyb, Os-MYBGA, Os GAMYB, OsMYBGA, MYBGA, Os2R_MYB15, 2R_MYB15 ,OsABA1, Zep1, OsAba1, Aba2, OsAba2, OsZep1, Zep, OsZep, Aba1, OsABA2, Osaba1, OsZEP-1, OsZEP, OSZEP1, ZEP1, ZEP,OsCML10,OsCNX, OsCNX1, CNX1,Pox1(Px,Pe), PRX74, Px, Pe, Pox1, prx74,OsPP23, PKG, OsPKG
47395	31578915	Wu Y., Peng W., Xiong F.	Sucrose transport involves in disease response to <i>Xanthomonas oryzae</i> pathovar <i>oryzae</i>.	Plant Signal Behav	14(12)	1656949	2019		
47396	31637532	Jiang D., Zhou L., Chen W., Ye N., Xia J., Zhuang C.	Overexpression of a microRNA-targeted NAC transcription factor improves drought and salt tolerance in Rice via ABA-mediated pathways.	Rice (N Y)	12(1)	76	2019	TIL1,LEA3-1,NCED1,P5CS,NCED3,RAB16A,MIR164B	NAC2, OsNAC2, ONAC004, ONAC4, ONAC034, ONAC34, ONAC058, ONAC58, OMTN2, Ostil1, OsNAC2/ONAC004, OsORE1.2, DLN113, OsDLN113,OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3, OsLEA3A, LEA3A,OSNCED1, OsNCED-1, OsNCED3, OsNced3, NCED3, OsNCED9, NCED9,OsP5CS, P5CS1, OsP5CS1, OsALDH18B1, ALDH18B1, OsP5CS-1, P5CS-1,OSNCED3, OsNCED-3, OsNCED3, OsNCED3a, NCED3a, OsNCED4, NCED4, OsNECD2, OsNCED2b, NCED2b ,Rab16A, rab21, RAB21, OsRab21, OsRAB21, OsRAB-21, OsRab16A, OsLEA29, rab16A, OsRAB16A,miR164b, osa-miR164b
47397	31681374	Zhao K., Lin F., Romero-Gamboa SP., Saha P., Goh H.J., An G., Jung K.H., Hazen S.P., Bartley L.E.	Rice Genome-Scale Network Integration Reveals Transcriptional Regulators of Grass Cell Wall Synthesis.	Front Plant Sci	10	1275	2019	F5HL2,BC7,_,_,_,_,AT1,AT6,PMT,WAHD1,BC6,MYB30,ERF62,DLN107,ROMT9,GH2,_,CSLH1,CEF1,_,NAC73,_,AT5,4CL3,CSLF6	OsF5HL2, CYP84A6, OsCYP84A6, OsF5H1, F5H1, OsCYP71AB10, CYP71AB10,OsCesA4, OsCESA4, CESA4, OS_CESA04, BC11, bc7t, Bc7(t), bc-7, OsCesA 4, CesA4, FC17/CESA4, FC17, OsFC17,ONAC007, ONAC7, OsSND1, SND1, OsSWN1, SWN1, DLN157, OsDLN157,OsMYB58/63-L, MYB58/63-L, OsMYB58/63a, MYB58/63a, Os2R_MYB29, 2R_MYB29, OsMYB58, MYB58,ONAC003, ONAC3, ONAC016, ONAC16, SNAC3, OsSND3, SND3, OsNAC006, NAC006, ONAC066,R2R3-MYB, OsMYB55/61-L,  MYB55/61-L,  OsMYB55,  OsMYB61-L, MYB55,  MYB61-L, OsMYB61L, MYB61L, OsMYB61b, MYB61b, Os2R_MYB53, 2R_MYB53, OsMYB2P-1, MYB2P-1,OsAT1, OsAt1,OsAT6, OsAt6,OsAT4, OsAt4, AT4, OsPMT, OsAT4/PMT, OsAT4/PMT1, OsAT4/OsPMT1, OsPMT1,OsWAHD1,Bc6*, Bc6, OsCesA9, CESA9, OsCESA9, OS_CESA09, OsCesA 9, CesA9, BC88, SDBC1, OsSDBC1,OsMYB30, OsMYB5P, MYB5P, OsMYB13a, MYB13a, Os2R_MYB26, 2R_MYB26, OsMYB30C, MYB30C,OsERF#062, OsERF062, OsERF62, AP2/EREBP#125, AP2/EREBP125, AP2-125, OsLG3, LG3, OsLG3/OsAP2-125, OsAP2-125, WAP1, OsWAP1, OsSTAP1, STAP1, ERF1, OsERF1,OsDLN107, WACH1, OsWACH1,COMT, OsCOMT, ROMT-9, OsCOMT1, OsCAldOMT1, CAldOMT1, OsOMT, OsCOMT15, COMT15,gh2, CAD2, CAD, OsCAD2, OsGH2 ,OsMYB4, Osmyb4, OsMyb4, MYB4, OsMYB55, MYB55, OsMyb8, MYB8, OsMYB13b, MYB13b, OsMYB15, MYB15, Os2R_MYB46, 2R_MYB46,OsCslH1, OsCSLH1 ,OsMYB103, OsMYB103L, CEF1/OsMYB103L, MYB103, MYB103L, OsMYB93, MYB93, OsFC9, FC9, Os2R_MYB74, 2R_MYB74,OsMYB55/61, OsMYB55, MYB55, OsMYB61, MYB61, OsMYB61a, MYB61a, Os2R_MYB5, 2R_MYB5 ,ONAC073, ONAC73, OsSND2, SND2,OsMYB58/63, OsMYB58, OsMYB63, MYB58/63, MYB58, MYB63, OsMYB58/63b, MYB58/63b, Os2R_MYB51, 2R_MYB51,OsAT5, OsAt5, OsFMT1, FMT1, OsFMT/AT5, OsFMT, FMT,Os4CL3, Os4CL2, Os4CL, 4CL2, 4CL,OsCslF6, OsCSLF6, OsCLD3, CLD3
47398	31622936	Biswas S., Islam M.N., Sarker S., Tuteja N., Seraj Z.I.	Overexpression of heterotrimeric G protein beta subunit gene (OsRGB1) confers both heat and salinity stress tolerance in rice.	Plant Physiol. Biochem.	144	334-344	2019		
47399	31597936	Mohammed U., Caine R.S., Atkinson J.A., Harrison E.L., Wells D., Chater C.C., Gray J.E., Swarup R., Murchie E.H.	Author Correction: Rice plants overexpressing OsEPF1 show reduced stomatal density and increased root cortical aerenchyma formation.	Sci Rep	9(1)	14827	2019		
47400	31654736	Saouros S., Cecchetti C., Jones A., Cameron A.D., Byrne B.	Strategies for successful isolation of a eukaryotic transporter.	Protein Expr. Purif.	166	105522	2020		
47401	31598902	Baysal C., P?rez-Gonz?lez A., Eseverri ?., Jiang X., Medina V., Caro E., Rubio L., Christou P., Zhu C.	Recognition motifs rather than phylogenetic origin influence the ability of targeting peptides to import nuclear-encoded recombinant proteins into rice mitochondria.	Transgenic Res.	29(1)	37-52	2020	SCSB	OsSCSb
47402	31659125	Yang S.Y., Lu W.C., Ko S.S., Sun C.M., Hung J.C., Chiou T.J.	Upstream Open Reading Frame and Phosphate-Regulated Expression of Rice <i>OsNLA1</i> Controls Phosphate Transport and Reproduction.	Plant Physiol.	182(1)	393-407	2020	PT4,PT8,PT1,PT2,NLA1,PT7,PT12	OsPT4, PHT1-4, OsPht1;4, PHT1-2, PHT1;4, OsPHT1;4,OsPT8, PHT1-8, OsPht1;8, Pht1;8, PHT1;8, OsPHT1;8,OsPT1, PHT1-1, OsPht1;1, Pht1;1, OsPHT1;1, PHT1;1,OsPT2, PTH1-2, OsPht1;2, PHT1;2, OsPHT1;2,OsRFPHC-13, OsNLA, NLA, OsNLA1, OsNLA1.1, OsNLA1.2, OsNLA1.3,  OsRING269, RING269,OsPT7, PHT1-7, OsPht1;7,OsPT12, PHT1-12, OsPht1;12
47403	31600873	Fan C., Wang G., Wang Y., Zhang R., Wang Y., Feng S., Luo K., Peng L.	sucrose synthase Enhances Hull Size and grain weight by Regulating Cell Division and Starch Accumulation in Transgenic Rice.	Int J Mol Sci	20(20)		2019	CESA1,FLO5,MCM3,SSI,BC6,E2F2,H1,BC7,WX1,RSUS6,AGPS2,RSUS5,_,RSUS1,RSUS3,CESA3,CYCB2;2,AGPL1,RSUS4,RSUS2	OsCesA1, OsCesA-1, OsCESA1, OS_CESA01, CesA1,OsSSIIIa, SSIII-2, OsSSIII-2, OsSS3A, SS3A, SS3a, OsSSSIIIa, SSIIIa, Flo5,OsMCM3,OsSSI, SSS 1, SSS1, SS1, OsSS1, SSSI, OsSSSI,Bc6*, Bc6, OsCesA9, CESA9, OsCESA9, OS_CESA09, OsCesA 9, CesA9, BC88, SDBC1, OsSDBC1,Orysa;E2F2, OsE2F2, DLN252, OsDLN252, OsE2Fa-2, E2Fa-2,OsH1, OsHis1.1, His1.1,OsCesA4, OsCESA4, CESA4, OS_CESA04, BC11, bc7t, Bc7(t), bc-7, OsCesA 4, CesA4, FC17/CESA4, FC17, OsFC17,wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx,SUS6, SS6, OsScS6, RSs6, RSus6, OsSUS6,OsAGPS2a, AGPS2A, AGPS2B, OsAGPS2, osagps2, APS2, APS2a, APS2b, AGPS2a, APGS2b, OsAGPS2b, AGPP, GAS8, OsAPS2, OsAPS2a, OsAPS2b,SUS5, SS5, OsScS5, RSs5, RSus5, OsSUS5,CAK1, MAT1, OsCAK1, OsMAT1, CDKA1, OsCDKA1,sus1, RSus1(t), SUS1, SS2, OsScS2, RSs2, RSus1, SuSy1, OsSUS1, RSS2, RSus2, OsRSUS1,RSus3(t), SUS3, SS3, OsScS3, RSs3, RSus3, OsSUS3, RSS3, OsEnS-111, Susy3, OsSusy3,OsCesA3, OsCESA3, OS_CESA03,cycB2;2 (=cycOs2), cycB2;2, cycOs2, CycB2;2, CycOs2, CYCB2-2, CYCOS2, CycB2-Os2, CYCB2, CycB2;os;2, OsCycB2;2, Orysa;CycB2;2, OsCYCOS2, Os;cycB2;2, CYCB2.2, OsCYCB2.2,OsAGPL1, OsAPL1, APL1, OsAGPL3, AGPL3, OsAGPSL3, AGPSL3,SUS4, SS4, OsScS4, RSs4, RSus4, OsSUS4,sus2, RSus2(t), SUS2, SS1, OsScS1, RSs1, RSus2, OsSUS2, RSS1, RSus1, OsSusy2, Susy2, OsRSUS1, RSUS1
47404	31610248	Ding G., Lei G.J., Yamaji N., Yokosho K., Mitani-Ueno N., Huang S., Ma J.F.	Vascular Cambium-Localized AtSPDT Mediates Xylem-to-Phloem Transfer of Phosphorus for Its Preferential Distribution in Arabidopsis.	Mol Plant	13(1)	99-111	2020		
47405	31779898	Pan J., Li Z., Wang Q., Yang L., Yao F., Liu W.	An S-domain receptor-like kinase, OsESG1, regulates early crown root development and drought resistance in rice.	Plant Sci.	290	110318	2020	ESG1,_,RAB16B,5NG4,LRA1,_,DREB1E,_,NOE1,IAA1,IAA22,PIN10A,PIN1B,PIN9,SAUR45,PR10B,DREB1B,HPPD,IAA16,LEA3-1	OsESG1, SDRLK-ESG1, OsSDRLK-ESG1,OsPR1, OsPR1a, PR1a, PR1, OsPR1b, PR1b,rab21, OsLEA28, OsRAB16D, OsRab16d, Rab16d, OsRAB16b, XERO1, OsXERO1, OsRD22, RD22,Os5NG4,OsPIN2, PIN2, OsLRA1, WAR1, OsWAR1,Hsp20,OsDREB1E, OsERF030, OsERF#030, OsERF30, ERF30, AP2/EREBP#160, AP2/EREBP160, OsDREB1-1,prx43, OsPRX43,CATC, OsCat, OsCatC, OsCATC, OsNOE1, noe1, catC, OsCATC, CAT3, OsCAT3, LLM9428, OsLLM9428,OsIAA1, OsIAA4,OsIAA22,PIN3A, OsPIN3a, OsPIN3t, OsPIN10a, OsPIN3,PIN1A, OsPIN1A, OsPIN1a, REH1, OsPIN1, OsPIN1b, REH1/OsPIN1,OsPIN9,OsSAUR45,RPR10b, PR-10b, PR10b, PBZ1, PBZ-1, OsPBZc, OsPR10b, BetV, OsBetV,OsDREB1B, ERF31, OsERF031, OsERF#031, OsERF31, AP2/EREBP#169, AP2/EREBP169, OsDREB1b, OsDREB1C, OsCBF1, CBF1,OsHPPD, Osl30, l30,OsIAA16, DLN134, OsDLN134,OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3, OsLEA3A, LEA3A
47406	31636842	Himeno S., Sumi D., Fujishiro H.	Toxicometallomics of Cadmium, Manganese and Arsenic with Special Reference to the Roles of Metal Transporters.	Toxicol Res	35(4)	311-317	2019	LSI1,LCD1	lsi1, NIP2-1, OsNIP2;1, NIP2;1, OsLsi1, lsi(t), OsNIP2.1/OsLsi1/OsSIIT1, OsNIP2.1, NIP2.1,NRAMP5, OsNRAMP5, OsNramp5, OsLCD1
47407	31664904	Li C., Liu X., Pan J., Guo J., Wang Q., Chen C., Li N., Zhang K., Yang B., Sun C., Deng X., Wang P.	A LIL3 chlp double mutant with exclusive accumulation of geranylgeranyl chlorophyll displays a lethal phenotype in rice.	BMC Plant Biol.	19(1)	456	2019	_	OsLIL3, LIL3
47408	31731425	Zaidi S.H.R., Zakari S.A., Zhao Q., Khan A.R., Shah J.M., Cheng F.	Anthocyanin Accumulation in Black Kernel Mutant Rice and its Contribution to ROS Detoxification in Response to High Temperature at the Filling Stage.	Antioxidants (Basel)	8(11)		2019	CHI3,F3'H,PAL1,CHS,F3H2,RD,ANS	gh1, GH1, OsGH1, OsCHI, Cfi, CHI, OsCHI3,OsF3'H, OsCYP75B3, CYP75B3, OsF3'H10, F3'H10, OsCYP71P3, CYP71P3,OsPAL, Pal1*, Pal1, PAL, Pal_1, PalI, PAL2, OsPAL01, PAL01, OSPAL, CP-1, GP-1, OsPAL1, PAL3, OsPAL3,CHS*, Oschs, chs, chas, OsCHS, OsCHS1, CHS1, OsPKS26, PKS26, OsCHS24, CHS24, OsCHS27, CHS27,OsF3H-2, F3H-2, OsF3H2, FNS1, OsFNS1, OsSAH4, SAH4, OsF3H8, F3H8,Rd, DFR, OsDFR, OS-DFR, OsDFR1, DFR1, DFR-1,ANS, OsANS1, ANS1, LDOX, LDOX1, OsLDOX, OsLDOX1
47409	31582471	Yu Y.	OsKNAT7 Bridges Secondary Cell Wall Formation and Cell Growth Regulation.	Plant Physiol.	181(2)	385-386	2019	NAC31,_,KNAT7,OFP2,GS2	ONAC031, ONAC31, OsSWN3,OsMYB55/61, OsMYB55, MYB55, OsMYB61, MYB61, OsMYB61a, MYB61a, Os2R_MYB5, 2R_MYB5 ,HOS66, HB365, OsKNAT7,OsOFP2, OsOFP03,OsGRF4, GRF4, GS2/OsGRF4, PT2, GLW2, GS2/GL2, LGS1, OsLGS1
47410	31642040	Kaur A., Neelam K., Kitazumi A., Kaur K., Sharma P., Mangat G.S., de Los Reyes BG., Brar D.S., Singh K.	Novel cis-acting regulatory elements in wild Oryza species impart improved rice bran quality by lowering the expression of Phospholipase D alpha1 enzyme (OsPLDalpha1).	Mol. Biol. Rep.	47(1)	401-422	2020		
47411	31607684	Lee D.W., Lee S.K., Rahman M.M., Kim Y.J., Zhang D., Jeon J.S.	The Role of Rice Vacuolar Invertase2 in seed size Control.	Mol. Cells	42(10)	711-720	2019	SMS2,_	INV3, OSINV3, OsINV3, OsVIN2, VIN2, VINV, OsSMS2,OSINV2, OsINV2, OsVIN1, VIN1
47412	31484206	Huang R., Li Z., Mao C., Zhang H., Sun Z., Li H., Huang C., Feng Y., Shen X., Bucher M., Zhang Z., Lin Y., Cao Y., Duanmu D.	Natural variation at OsCERK1 regulates arbuscular mycorrhizal symbiosis in rice.	New Phytol.	225(4)	1762-1776	2020		
47413	31677869	Feng S.J., Liu X.S., Ma L.Y., Khan I.U., Rono J.K., Yang Z.M.	Identification of epigenetic mechanisms in paddy crop associated with lowering environmentally related cadmium risks to food safety.	Environ. Pollut.	256	113464	2020	DRM2,CTF,SDG714,MET1A	OsDRM2, osdrm2, DRM2-1,OsCTF,OsSDG714, OsSET5, OsSUVH4,OsMET1a, OsMET1-1, MET1a, MET1-1, OsMET1, OsDMT702, DMT702
47414	31598070	Fujino K., Hirayama Y., Kaji R.	Marker-assisted selection in rice breeding programs in Hokkaido.	Breed. Sci.	69(3)	383-392	2019		
47415	31402926	Li X., Chang Y., Ma S., Shen J., Hu H., Xiong L.	Genome-Wide Identification of SNAC1-Targeted Genes Involved in Drought Response in Rice.	Front Plant Sci	10	982	2019		
47416	31309315	Li C., Wang D., Peng S., Chen Y., Su P., Chen J., Zheng L., Tan X., Liu J., Xiao Y., Kang H., Zhang D., Wang G.L., Liu Y.	Genome-wide association mapping of resistance against rice blast strains in South China and identification of a new Pik allele.	Rice (N Y)	12(1)	47	2019		
47417	31286900	Tang Y., Wang J., Bao X., Liang M., Lou H., Zhao J., Sun M., Liang J., Jin L., Li G., Qiu Y., Liu K.	Genome-wide identification and expression profile of HD-ZIP genes in physic nut and functional analysis of the JcHDZ16 gene in transgenic rice.	BMC Plant Biol.	19(1)	298	2019		
47418	31296569	Varden F.A., Saitoh H., Yoshino K., Franceschetti M., Kamoun S., Terauchi R., Banfield M.J.	Cross-reactivity of a rice NLR immune receptor to distinct effectors from the rice blast pathogen <i>Magnaporthe oryzae</i> provides partial disease resistance.	J. Biol. Chem.	294(35)	13006-13016	2019		
47419	31272720	Lin L., Zhao Y., Liu F., Chen Q., Qi J.	Narrow leaf 1 (nal1) regulates leaf shape by affecting cell expansion in rice (Oryza sativa L.).	Biochem. Biophys. Res. Commun.	516(3)	957-962	2019		
47420	31277568	Wang P., Wang Y., Ren F.	Genome-wide identification of the CLAVATA3/EMBRYO SURROUNDING REGION (CLE) family in grape (Vitis vinifera L.).	BMC Genomics	20(1)	553	2019		
47421	31481229	Huang Y., Jiao Y., Xie N., Guo Y., Zhang F., Xiang Z., Wang R., Wang F., Gao Q., Tian L., Li D., Chen L., Liang M.	OsNCED5, a 9-cis-epoxycarotenoid dioxygenase gene, regulates salt and water stress tolerance and leaf senescence in rice.	Plant Sci.	287	110188	2019		
47422	31225911	Zheng T., Sun J., Zhou S., Chen S., Lu J., Cui S., Tian Y., Zhang H., Cai M., Zhu S., Wu M., Wang Y., Jiang L., Zhai H., Wang H., Wan J.	Post-transcriptional regulation of Ghd7 protein stability by phytochrome and OsGI in photoperiodic control of flowering in rice.	New Phytol.	224(1)	306-320	2019	PHYA,GHD7,GI,PHYB	phyA, PHYA* (phyA), PHYA*, Phya, PHY18, phy 18, OsPHYA ,Ghd2, Ghd7, OsGhd7, OsCCT26, OsCMF8, OsI, Ghd7/Hd4, Hd4, EH7-1/Hd4, Ghd7-0a, EH7-1, EH7/Ghd7, EH7, OsEH7, GLW7.1, OsGLW7.1,OsGI, Gi, Os-GI,phyB, PHYB1, OsPHYB, OsphyB, OsYHB, YHB, OsPHYB/OsYHB
47423	31301594	Guo J., Li K., Zhang X., Huang H., Huang F., Zhang L., Wang Y., Li T., Yu H.	Genetic properties of cadmium translocation from straw to brown rice in low-grain cadmium rice (Oryza sativa L.) line.	Ecotoxicol. Environ. Saf.	182	109422	2019		
47424	31289318	Xu J., Lv Y., Liu X., Wei Q., Qi Z., Yang S., Liao L.	A general non-rectangular hyperbola equation for photosynthetic light response curve of rice at various leaf ages.	Sci Rep	9(1)	9909	2019		
47425	31338097	Nakayama T., Takahashi S., Waki T.	Formation of Flavonoid Metabolons: Functional Significance of protein-protein Interactions and Impact on Flavonoid Chemodiversity.	Front Plant Sci	10	821	2019		
47426	31325809	Li Y., Hu W., Zhao J., Chen Q., Wang W., Li B., Li Y.F.	Selenium decreases methylmercury and increases nutritional elements in rice growing in mercury-contaminated farmland.	Ecotoxicol. Environ. Saf.	182	109447	2019		
47427	31349693	Lekklar C., Suriya-Arunroj D., Pongpanich M., Comai L., Kositsup B., Chadchawan S., Buaboocha T.	Comparative Genomic Analysis of Rice with Contrasting Photosynthesis and Grain Production under Salt Stress.	Genes (Basel)	10(8)		2019		
47428	31396532	Yoo Y.H., Hong W.J., Jung K.H.	A Systematic View Exploring the Role of Chloroplasts in Plant Abiotic Stress Responses.	Biomed Res Int	2019	6534745	2019		
47429	31125438	Lahari Z., Ullah C., Kyndt T., Gershenzon J., Gheysen G.	Strigolactones enhance root-knot nematode (Meloidogyne graminicola) infection in rice by antagonizing the jasmonate pathway.	New Phytol.	224(1)	454-465	2019		
47430	31350571	Krishnamurthy P., Vishal B., Khoo K., Rajappa S., Loh C.S., Kumar P.P.	Expression of AoNHX1 increases salt tolerance of rice and Arabidopsis, and bHLH transcription factors regulate AtNHX1 and AtNHX6 in Arabidopsis.	Plant Cell Rep.	38(10)	1299-1315	2019		
47431	31300921	Hsu C.H., Hsu Y.T.	Biochemical responses of rice roots to cold stress.	Botanical Studies	60(1)	14	2019		
47432	31309345	Zhang B., Liu H., Qi F., Zhang Z., Li Q., Han Z., Xing Y.	Genetic Interactions Among Ghd7, Ghd8, OsPRR37 and Hd1 Contribute to Large Variation in heading date in Rice.	Rice (N Y)	12(1)	48	2019		
47433	31332521	Swain D.M., Sahoo R.K., Chandan R.K., Ghosh S., Kumar R., Jha G., Tuteja N.	Concurrent overexpression of rice G-protein beta and gamma subunits provide enhanced tolerance to sheath blight disease and abiotic stress in rice.	Planta	250(5)	1505-1520	2019		
47434	31269643	Zhang Y., Liu Q., Zhang Y., Chen Y., Yu N., Cao Y., Zhan X., Cheng S., Cao L.	<i>LMM24</i> Encodes Receptor-Like Cytoplasmic Kinase 109, Which Regulates Cell Death and Defense Responses in Rice.	Int J Mol Sci	20(13)		2019		
47435	31321562	Jiang L., Li G., Chern M., Jain R., Pham N.T., Martin J.A., Schackwitz W.S., Zhao J., Ruan D., Huang R., Zheng J., Ronald P.C.	Whole-Genome Sequencing Identifies a Rice grain shape Mutant, gs9-1.	Rice (N Y)	12(1)	52	2019		
47436	31572582	Zhou X., Zhao G., Sun S., Li J.	Antihypertensive effect of giant embryo brown rice and pre-germinated giant embryo brown rice on spontaneously hypertensive rats.	Food Sci Nutr	7(9)	2888-2896	2019		
47437	31338257	Zhao Y., Zou Z.	Genomics analysis of genes encoding respiratory burst oxidase homologs (RBOHs) in jatropha and the comparison with castor bean.	PeerJ	7	e7263	2019		
47438	31363935	Kakar N., Jumaa S.H., Redo?a ED., Warburton M.L., Reddy K.R.	Evaluating rice for salinity using pot-culture provides a systematic tolerance assessment at the seedling stage.	Rice (N Y)	12(1)	57	2019		
47439	31338116	Desai S.V., Balasubramanian V.N., Fukatsu T., Ninomiya S., Guo W.	Automatic estimation of heading date of paddy rice using deep learning.	Plant Methods	15	76	2019		
47440	31289331	Kim S.L., Chung Y.S., Silva R.R., Ji H., Lee H., Choi I., Kim N., Lee E., Baek J., Lee G.S., Kwon T.R., Kim K.H.	The opening of phenome-assisted selection era in the early seedling stage.	Sci Rep	9(1)	9948	2019		
47441	31279859	Li Y., Zheng C., Zhang Z., Zhou J., Zhang H., Xie X.	Characterization of Phytochrome C functions in the control of de-etiolation and agronomic traits in rice.	Plant Physiol. Biochem.	142	117-124	2019		
47442	31303070	Azizi P., Osman M., Hanafi M.M., Sahebi M., Rafii M.Y., Taheri S., Harikrishna J.A., Tarinejad A.R., Mat Sharani S., Yusuf M.N.	Molecular insights into the regulation of rice kernel elongation.	Crit. Rev. Biotechnol.	39(7)	904-923	2019		
47443	31355735	Persaud R., Saravanakumar D., Persaud M.	Identification of Resistant Cultivars for Sheath Blight and use of AMMI Models to Understand Genotype and Environment Interactions.	Plant Dis.	103(9)	2204-2211	2019		
47444	31309351	Ghosal S., Casal C., Quilloy F.A., Septiningsih E.M., Mendioro M.S., Dixit S.	Deciphering Genetics Underlying Stable Anaerobic Germination in Rice: Phenotyping, QTL Identification, and Interaction Analysis.	Rice (N Y)	12(1)	50	2019		
47445	31366274	Dang C., Sun C., Lu Z., Zhong F., Wang F., Wang Q., Sun R., Peng Y., Ye G.	Cry2A rice did not affect the interspecific interactions between two rice planthoppers, <i>Nilaparvata lugens</i>, and <i>Sogatella furcifera</i>.	GM Crops Food	10(3)	170-180	2019		
47446	31632626	Mitsuya S., Murakami N., Sato T., Kazama T., Toriyama K., Skoulding N.S., Kano-Nakata M., Yamauchi A.	Evaluation of rice grain yield and yield components of Nona Bokra chromosome segment substitution lines with the genetic background of Koshihikari, in a saline paddy field.	AoB Plants	11(5)	plz040	2019		
47447	31291890	Hou W., Tr?nkner M., Lu J., Yan J., Huang S., Ren T., Cong R., Li X.	Interactive effects of nitrogen and potassium on photosynthesis and photosynthetic nitrogen allocation of rice leaves.	BMC Plant Biol.	19(1)	302	2019		
47448	31270366	Wang P., Xiong Y., Gong R., Yang Y., Fan K., Yu S.	A key variant in the cis-regulatory element of flowering gene Ghd8 associated with cold tolerance in rice.	Sci Rep	9(1)	9603	2019		
47449	31332206	Brusamarello-Santos LCC., Alberton D., Valdameri G., Camilios-Neto D., Covre R., Lopes K.P., Zibetti Tadra-Sfeir M., Faoro H., Adele Monteiro R., Barbosa-Silva A., John Broughton W., Oliveira Pedrosa F., Wassem R., Souza E.M.	Modulation of defence and iron homeostasis genes in rice roots by the diazotrophic endophyte Herbaspirillum seropedicae.	Sci Rep	9(1)	10573	2019		
47450	31335882	Mahender A., Ali J., Prahalada G.D., Sevilla M.A.L., Balachiranjeevi C.H., Md J., Maqsood U., Li Z.	Genetic dissection of developmental responses of agro-morphological traits under different doses of nutrient fertilizers using high-density SNP markers.	PLoS ONE	14(7)	e0220066	2019		
47451	31320685	Karmakar S., Datta K., Molla K.A., Gayen D., Das K., Sarkar S.N., Datta S.K.	Proteo-metabolomic investigation of transgenic rice unravels metabolic alterations and accumulation of novel proteins potentially involved in defence against Rhizoctonia solani.	Sci Rep	9(1)	10461	2019		
47452	31325077	Giuliani R., Karki S., Covshoff S., Lin H.C., Coe R.A., Koteyeva N.K., Evans M.A., Quick W.P., Von Caemmerer S., Furbank R.T., Hibberd J.M., Edwards G.E., Cousins A.B.	Transgenic maize phosphoenolpyruvate carboxylase alters leaf-atmosphere CO2 and 13CO2 exchanges in Oryza sativa.	Photosyn. Res.	142(2)	153-167	2019		
47453	31365589	Huang M., Tao Z., Lei T., Chen J., Cao F., Yin X., Zou Y.	Contrasting change in biomass translocation with environment in two rice hybrids.	PLoS ONE	14(7)	e0220651	2019		
47454	31326863	Sui C., Li F., Wu H., Yin H., Zhang S., Waterhouse G.I.N., Wang J., Zhu L., Ai S.	Photoelectrochemical biosensor for 5hmC detection based on the photocurrent inhibition effect of ZnO on MoS2/C3N4 heterojunction.	Biosens Bioelectron	142	111516	2019		
47455	31350673	Arbelaez J.D., Dwiyanti M.S., Tandayu E., Llantada K., Jarana A., Ignacio J.C., Platten J.D., Cobb J., Rutkoski J.E., Thomson M.J., Kretzschmar T.	1k-RiCA (1K-Rice Custom Amplicon) a novel genotyping amplicon-based SNP assay for genetics and breeding applications in rice.	Rice (N Y)	12(1)	55	2019		
47456	31376807	Ye C., Zhou Q., Wu X., Ji G., Li Q.Q.	Genome-wide alternative polyadenylation dynamics in response to biotic and abiotic stresses in rice.	Ecotoxicol. Environ. Saf.	183	109485	2019		
47457	31340544	Deng G., Huang X., Xie L., Tan S., Gbokie T., Bao Y., Xie Z., Yi K.	Identification and Expression of <i>SAUR</i> Genes in the CAM Plant <i>Agave</i>.	Genes (Basel)	10(7)		2019		
47458	31598078	Hao X., Wu C., Wang R., Tian L., Song T., Tan H., Peng Y., Zeng M., Chen L., Liang M., Li D.	Association between sequence variants in cadmium-related genes and the cadmium accumulation trait in thermo-sensitive genic male sterile rice.	Breed. Sci.	69(3)	455-463	2019		
47459	31299895	Du P., Luo H., He J., Mao T., Du B., Hu L.	Different tillage induces regulation in 2-acetyl-1-pyrroline biosynthesis in direct-seeded fragrant rice.	BMC Plant Biol.	19(1)	308	2019		
47460	31332547	Norton G.J., Travis A.J., Talukdar P., Hossain M., Islam M.R., Douglas A., Price A.H.	Genetic loci regulating arsenic content in rice grains when grown flooded or under alternative wetting and drying irrigation.	Rice (N Y)	12(1)	54	2019		
47461	31290098	Qiao F., Hu R., Huang J.	Genetically modified (GM) rice versus non-GM rice: pesticide use and yield.	Sci China Life Sci			2019		
47462	31038680	Wu Z., Tang J., Zhuo J., Tian Y., Zhao F., Li Z., Yan Y., Yang R.	Chromatin Signature and Transcription Factor Binding Provide a Predictive Basis for Understanding Plant Gene Expression.	Plant Cell Physiol.	60(7)	1471-1486	2019		
47463	31298253	Massicot F., Messire G., Vall?e A., Vasse J.L., Py S., Behr J.B.	Regiospecific formation of sugar-derived ketonitrone towards unconventional C-branched pyrrolizidines and indolizidines.	Org. Biomol. Chem.	17(29)	7066-7077	2019		
47464	31355108	Kumar A., Singh V.J., Krishnan S.G., Vinod K.K., Bhowmick P.K., Nagarajan M., Ellur R.K., Bollinedi H., Singh A.K.	WA-CMS-based iso-cytoplasmic restorers derived from commercial rice hybrids reveal distinct population structure and genetic divergence towards restorer diversification.	3 Biotech	9(8)	299	2019		
47465	31332532	Zecchin S., Colombo M., Cavalca L.	Exposure to different arsenic species drives the establishment of iron- and sulfur-oxidizing bacteria on rice root iron plaques.	World J. Microbiol. Biotechnol.	35(8)	117	2019		
47466	31598080	Shishido R., Akimoto M., Htut T., Sato T., Ishii T.	Assessment of genetic diversity and genetic structure of wild rice populations in Myanmar.	Breed. Sci.	69(3)	471-477	2019		
47467	31367224	Arbelaez J.D., Tandayu E., Reveche M.Y., Jarana A., van Rogen P., Sandager L., Stolt P., Ng E., Varshney R.K., Kretzschmar T., Cobb J.	Methodology: <i>ssb</i>-<i>MASS</i>: a single seed-based sampling strategy for marker-assisted selection in rice.	Plant Methods	15	78	2019		
47468	31338715	Kurita K., Sakamoto Y., Naruse S., Matsunaga T.M., Arata H., Higashiyama T., Habu Y., Utsumi Y., Utsumi C., Tanaka M., Takahashi S., Kim J.M., Seki M., Sakamoto T., Matsunaga S.	Intracellular localization of histone deacetylase HDA6 in plants.	J. Plant Res.	132(5)	629-640	2019		
47469	31286320	Smita S., Katiyar A., Lenka S.K., Dalal M., Kumar A., Mahtha S.K., Yadav G., Chinnusamy V., Pandey D.M., Bansal K.C.	Gene network modules associated with abiotic stress response in tolerant rice genotypes identified by transcriptome meta-analysis.	Funct. Integr. Genomics	20(1)	29-49	2020		
47470	31341737	Ramakrishnan S.M., Sidhu J.S., Ali S., Kaur N., Wu J., Sehgal S.K.	Molecular characterization of bacterial leaf streak resistance in hard winter wheat.	PeerJ	7	e7276	2019		
47471	31264021	Vicuna Requesens D., Gonzalez Romero ME., Devaiah S.P., Chang Y.K., Flory A., Streatfield S., Ring R., Phillips C., Hood N.C., Marbaniang C.D., Howard J.A., Hood E.E.	The maize alpha-zein promoter can be utilized as a strong inducer of cellulase enzyme expression in maize kernels.	Transgenic Res.	28(5-6)	537-547	2019		
47472	31266517	Liu Y., Liu K., Yin L., Yu Y., Qi J., Shen W.H., Zhu J., Zhang Y., Dong A.	H3K4me2 functions as a repressive epigenetic mark in plants.	Epigenetics Chromatin	12(1)	40	2019		
47473	31309320	Feng Z., Kang H., Li M., Zou L., Wang X., Zhao J., Wei L., Zhou N., Li Q., Lan Y., Zhang Y., Chen Z., Liu W., Pan X., Wang G.L., Zuo S.	Identification of new rice cultivars and resistance loci against rice black-streaked dwarf virus disease through genome-wide association study.	Rice (N Y)	12(1)	49	2019		
47474	31280458	Polosoro A., Enggarini W., Ohmido N.	Global epigenetic changes of histone modification under environmental stresses in rice root.	Chromosome Res.	27(4)	287-298	2019		
47475	31063672	Mangel N., Fudge J.B., Li K.T., Wu T.Y., Tohge T., Fernie A.R., Szurek B., Fitzpatrick T.B., Gruissem W., Vanderschuren H.	Enhancement of vitamin B6 levels in rice expressing Arabidopsis vitamin B6 biosynthesis de novo genes.	Plant J.	99(6)	1047-1065	2019		
47476	31292505	Chen H., Li Q.P., Zeng Y.L., Deng F., Ren W.J.	Effect of different shading materials on grain yield and quality of rice.	Sci Rep	9(1)	9992	2019		
47477	31346897	Yang Y., Poignavent V., Gillet F.X., Vignols F., D?m?n? H.	NMR chemical shift backbone assignment of the viral protein P1 encoded by the African Rice Yellow Mottle Virus.	Biomol NMR Assign	13(2)	345-348	2019		
47478	31346804	Singh P., Mazumdar P., Harikrishna J.A., Babu S.	Sheath blight of rice: a review and identification of priorities for future research.	Planta	250(5)	1387-1407	2019		
47479	31262943	Fang Y., Chen L., Lin K., Feng Y., Zhang P., Pan X., Sanders J., Wu Y., Wang X.E., Su Z., Chen C., Wei H., Zhang W.	Characterization of functional relationships of R-loops with gene transcription and epigenetic modifications in rice.	Genome Res.	29(8)	1287-1297	2019		
47480	31160418	Worthen J.M., Yamburenko M.V., Lim J., Nimchuk Z.L., Kieber J.J., Schaller G.E.	Type-B response regulators of rice play key roles in growth, development and cytokinin signaling.	Development	146(13)		2019		
47481	31361745	Guo B., Itami J., Oikawa K., Motoda Y., Kigawa T., Numata K.	Native protein delivery into rice callus using ionic complexes of protein and cell-penetrating peptides.	PLoS ONE	14(7)	e0214033	2019		
47482	31357526	Tang J., Sun Z., Chen Q., Damaris R.N., Lu B., Hu Z.	Nitrogen Fertilizer Induced Alterations in The Root Proteome of Two Rice Cultivars.	Int J Mol Sci	20(15)		2019		
47483	31308454	Sun L., Wang J., Song K., Sun Y., Qin Q., Xue Y.	Transcriptome analysis of rice (Oryza sativa L.) shoots responsive to cadmium stress.	Sci Rep	9(1)	10177	2019		
47484	31285556	Kazama T., Okuno M., Watari Y., Yanase S., Koizuka C., Tsuruta Y., Sugaya H., Toyoda A., Itoh T., Tsutsumi N., Toriyama K., Koizuka N., Arimura S.I.	Curing cytoplasmic male sterility via TALEN-mediated mitochondrial genome editing.	Nat Plants	5(7)	722-730	2019		
47485	31278256	Wang C., Tang S., Zhan Q., Hou Q., Zhao Y., Zhao Q., Feng Q., Zhou C., Lyu D., Cui L., Li Y., Miao J., Zhu C., Lu Y., Wang Y., Wang Z., Zhu J., Shangguan Y., Gong J., Yang S., Wang W., Zhang J., Xie H., Huang X., Han B.	Dissecting a heterotic gene through GradedPool-Seq mapping informs a rice-improvement strategy.	Nat Commun	10(1)	2982	2019		
47486	31321558	Gao Y., Gu H., Leburu M., Li X., Wang Y., Sheng J., Fang H., Gu M., Liang G.	The heterotrimeric G protein beta subunit rgb1 is required for seedling formation in rice.	Rice (N Y)	12(1)	53	2019	RGG2,RGB1,LK3,D1,RGG1	OsRGG2,OsWD40-80, RGbeta1, OsRGB1,  OsDWD38, DWD38,lk3(t), lk3(t)*, SG3, GS3, SG3-GS3, OsGW3, OsGS3, RGG3/GS3/Mi/OsGGC1, RGG3, Mi, OsGGC1, GGC1, OsSYL3, SYL3, TT2, OsTT2,d1, GPA1, GA1, OsGA1, RGA1, dwf1, XA7, RGA, D1/RGA1, D89, TGW5, OsTGW5, SRG5, OsSRG5,OsRGG1
47487	31349852	Liu G., Yin K., Zhang Q., Gao C., Qiu J.L.	Modulating chromatin accessibility by transactivation and targeting proximal dsgRNAs enhances Cas9 editing efficiency in vivo.	Genome Biol.	20(1)	145	2019		
47488	31598072	Okada S., Yamasaki M.	Validation of a quantitative trait locus for the white-core expression rate of grain on chromosome 6 in a brewing rice cultivar and development of DNA markers for marker-assisted selection.	Breed. Sci.	69(3)	401-409	2019		
47489	31131881	Gao S., Xiao Y., Xu F., Gao X., Cao S., Zhang F., Wang G., Sanders D., Chu C.	Cytokinin-dependent regulatory module underlies the maintenance of zinc nutrition in rice.	New Phytol.	224(1)	202-215	2019		
47490	31354774	Eroglu S., Karaca N., Vogel-Mikus K., Kav?i? A., Filiz E., Tanyolac B.	The Conservation of VIT1-Dependent Iron Distribution in Seeds.	Front Plant Sci	10	907	2019		
47491	31359582	Wang Y., Huang C., Hu B., Liu Y., Walter G.H., Hereward J.P.	Gene flow across host-associated populations of the rice stem borer Chilo suppressalis Walker (Lepidoptera: Crambidae): implications for Bt resistance management in rice.	Pest Manag. Sci.	76(2)	695-703	2020		
47492	31446506	Kim Y.A., Moon H., Park C.J.	CRISPR/Cas9-targeted mutagenesis of Os8N3 in rice to confer resistance to Xanthomonas oryzae pv. oryzae.	Rice (N Y)	12(1)	67	2019		
47493	31350929	Zhao B., Wu T.T., Ma S.S., Jiang D.J., Bie X.M., Sui N., Zhang X.S., Wang F.	TaD27-B gene controls the tiller number in hexaploid wheat.	Plant Biotechnol. J.	18(2)	513-525	2020		
47494	31336017	Wang C.C., Yu H., Huang J., Wang W.S., Faruquee M., Zhang F., Zhao X.Q., Fu B.Y., Chen K., Zhang H.L., Tai S.S., Wei C., McNally K.L., Alexandrov N., Gao X.Y., Li J., Li Z.K., Xu J.L., Zheng T.Q.	Towards a deeper haplotype mining of complex traits in rice with RFGB v2.0.	Plant Biotechnol. J.	18(1)	14-16	2020		
47495	31391557	Pipatpongpinyo W., Korkmaz U., Wu H., Kena A., Ye H., Feng J., Gu X.Y.	Assembling seed dormancy genes into a system identified their effects on seedbank longevity in weedy rice.	Heredity	124(1)	135-145	2020		
47496	31211389	Xiong Y., Ren Y., Li W., Wu F., Yang W., Huang X., Yao J.	NF-YC12 is a key multi-functional regulator of accumulation of seed storage substances in rice.	J. Exp. Bot.	70(15)	3765-3780	2019	AGPS1,GLUD1,HXK7,SUT1,GLN1;3,HAP3K,MST6,FLO5,HAP5L,GLUB1,FLO6,SSIIIB,AGPS2,AGPL2	OsAGPS1, APS1, OsAPS1, AGPsma,GluD1, GluD-1, OsGluD-1, OsEnS-33, EnS-33, GluD,OsHXK7, OsHXK8,OsSUT1, OsSUT2,OsGLN1;3, OsGS1;3, GS1;3,OsHAP3K/OsNF-YB1, OsHAP3K, OsNF-YB1, NF-YB1, nf-yb1, OsLEC1, OsNF-YB-1, NFYB1, OsEnS-41,OsMST6, STP6, OsSTP6,OsSSIIIa, SSIII-2, OsSSIII-2, OsSS3A, SS3A, SS3a, OsSSSIIIa, SSIIIa, Flo5,OsEnS-133, OsHAP5L, OsNF-YC12, NF-YC12, OsNF-YC11, NF-YC11, NFYC11,GluB1, GluB1-A, GluB-1a, GluB-1, OsGluB1, GluB-1b, OsGluB-1b, GLUB1B,OsSIP4, SIP4, OsFLO6, OsSFq3, SFq3,OsSSIIIb. SSIII-1, SSIIIa,OsAGPS2a, AGPS2A, AGPS2B, OsAGPS2, osagps2, APS2, APS2a, APS2b, AGPS2a, APGS2b, OsAGPS2b, AGPP, GAS8, OsAPS2, OsAPS2a, OsAPS2b,OsAGPL2, osagpl2, APL2, OsAPL2, AGPiso, sh2, Sh2, GIF2, GAS1 
47497	31336020	Miao C., Wang D., He R., Liu S., Zhu J.K.	Mutations in MIR396e and MIR396f increase grain size.and modulate shoot architecture in rice.	Plant Biotechnol. J.	18(2)	491-501	2020		
47498	31412785	Zhang Y., Zhou Y., Sun Q., Deng D., Liu H., Chen S., Yin Z.	Genetic determinants controlling maize Rubisco activase gene expression and a comparison with rice counterparts.	BMC Plant Biol.	19(1)	351	2019		
47499	31430915	Biselli C., Volante A., Desiderio F., Tondelli A., Gianinetti A., Finocchiaro F., Taddei F., Gazza L., Sgrulletta D., Cattivelli L., Val? G.	GWAS for Starch-Related Parameters in <i>Japonica</i> Rice (<i>Oryza sativa</i> L.).	Plants (Basel)	8(8)		2019		
47500	31062846	Wedger M.J., Pusadee T., Wongtamee A., Olsen K.M.	Discordant Patterns of Introgression Suggest Historical Gene Flow into Thai Weedy Rice from Domesticated and Wild Relatives.	J. Hered.	110(5)	601-609	2019		
47501	31407206	Acevedo L.A., Korson N.E., Williams J.M., Nicholson L.K.	Tuning a timing device that regulates lateral root development in rice.	J. Biomol. NMR	73(8-9)	493-507	2019		
47502	31447175	Raina M., Salgotra R.K., Pandotra P., Rathour R., Singh K.	Genetic enhancement for semi-dwarf and bacterial blight resistance with enhanced grain quality characteristics in traditional Basmati rice through marker-assisted selection.	C. R. Biol.	342(5-6)	142-153			
47503	31382584	Wang X., Yu C., Liu Y., Yang L., Li Y., Yao W., Cai Y., Yan X., Li S., Cai Y., Li S., Peng X.	<i>GmFAD3A,</i> A <i>omega</i>-3 fatty acid desaturase Gene, Enhances cold tolerance and Seed germination rate under Low Temperature in Rice.	Int J Mol Sci	20(15)		2019		
47504	31301098	Wang P., Yao S., Kosami K.I., Guo T., Li J., Zhang Y., Fukao Y., Kaneko-Kawano T., Zhang H., She Y.M., Wang P., Xing W., Hanada K., Liu R., Kawano Y.	Identification of endogenous small peptides involved in rice immunity through transcriptomics- and proteomics-based screening.	Plant Biotechnol. J.	18(2)	415-428	2020		
47505	31418202	Wang D.F., Zheng X.Y., Xiao Q.T., Wang W., Lin R.Y.	[Effects of Pseudomonas aeruginosa on root activity and leaf physiological characteristics in rice (Oryza sativa L.) seedling under cadmium stress].	Ying Yong Sheng Tai Xue Bao	30(8)	2767-2774	2019		
47506	31431512	Tang J., Wang Y., Yin W., Dong G., Sun K., Teng Z., Wu X., Wang S., Qian Y., Pan X., Qian Q., Chu C.	Mutation of a Nucleotide-Binding Leucine-Rich Repeat Immune Receptor-Type Protein Disrupts Immunity to Bacterial Blight.	Plant Physiol.	181(3)	1295-1313	2019	_,RAR1,PR5,XA21,XA4,XA3,RAC1,PHYB,JIOSPR10,PR10A,NH1,PR1A,AOS2,WED	Lox2:Os:1, OsLOX9, LOX9, OsLOX8, LOX8, OsLOX2, LOX2, OsRLL, OsHI-LOX, HI-LOX, RLL2 LOX, RLL2, Lox2osPil, OsLOX2;1, LOX2;1, OsLOX1, OsLOX7, LOX7,Os RAR1, OsRAR1,OsPR5, Pir2, PR-5, PR5-1,Xa21*, Xa21, OsXA21,Xa4, Xa4(Xa4a), Xa-4, Xa4-a, WAK, wak, xa4,Xa-3, Xa3 (Xa4b, Xa6, Xa9, Xa w), Xa3, Xaw, Xa6, Xa9, Xa4-b, XA26, Xa26(t), Xa26(t)*, Xa26, RKb, MRKb, MRKB, TRKb, Xa3/Xa26,OsRAC1, OsRac1, Os Rac1, Rac1, Os-Rac1,phyB, PHYB1, OsPHYB, OsphyB, OsYHB, YHB, OsPHYB/OsYHB,JIOsPR10, OsPR10, PR10, OsJiPR10, JiPR10, OsPR10c, PR10c,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2, DLN5, OsDLN5,  OsBTBA1, BTBA1,OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1, OsPR1b, PR1alpha, OsPR1alpha,OsAOS2, CYP74A2, OsAOS, OsAOS1,OsWED
47507	31476672	Wang J., Su J., Li Z., Liu B., Cheng G., Jiang Y., Li Y., Zhou S., Yuan W.	Source apportionment of heavy metal and their health risks in soil-dustfall-plant system nearby a typical non-ferrous metal mining area of Tongling, Eastern China.	Environ. Pollut.	254(Pt B)	113089	2019		
47508	31452670	Wu K., Du C., Ma F., Shen Y., Liang D., Zhou J.	Rapid diagnosis of nitrogen status in rice based on Fourier transform infrared photoacoustic spectroscopy (FTIR-PAS).	Plant Methods	15	94	2019		
47509	30869151	Xu F., Wang K., Yuan W., Xu W., Liu S., Kronzucker H.J., Chen G., Miao R., Zhang M., Ding M., Xiao L., Kai L., Zhang J., Zhu Y.	Erratum: Overexpression of rice aquaporin OsPIP1;2 improves yield by enhancing mesophyll CO2 conductance and phloem sucrose transport.	J. Exp. Bot.	70(15)	4067	2019		
47510	31329340	Chen J., Chu Z., Han H., Goggin D.E., Yu Q., Sayer C., Powles S.B.	A Val-202-Phe alpha-tubulin mutation and enhanced metabolism confer dinitroaniline resistance in a single Lolium rigidum population.	Pest Manag. Sci.	76(2)	645-652	2020		
47511	31516923	Panda D., Sahu T., Barik J., Mishra S.S., Padhan B., Lenka S.K.	Data assessing genotypic variations in selected traditional rice landraces of Jeypore tract of Odisha, India based on photosynthetic traits.	Data Brief	25	104305	2019		
47512	31462233	Xiong Q., Zhong L., Shen T., Cao C., He H., Chen X.	iTRAQ-based quantitative proteomic and physiological analysis of the response to N deficiency and the compensation effect in rice.	BMC Genomics	20(1)	681	2019		
47513	31417977	Du Q., Campbell M., Yu H., Liu K., Walia H., Zhang Q., Zhang C.	Network-based feature selection reveals substructures of gene modules responding to salt stress in rice.	Plant Direct	3(8)	e00154	2019		
47514	31381594	Chaudhury A., Dalal A.D., Sheoran N.T.	Isolation, cloning and expression of CCA1 gene in transgenic progeny plants of Japonica rice exhibiting altered morphological traits.	PLoS ONE	14(8)	e0220140	2019		
47515	31464583	Zhang J., Guan W., Huang C., Hu Y., Chen Y., Guo J., Zhou C., Chen R., Du B., Zhu L., Huanhan D., He G.	Combining next-generation sequencing and single-molecule sequencing to explore brown plant hopper responses to contrasting genotypes of japonica rice.	BMC Genomics	20(1)	682	2019		
47516	31509927	Saha I., Sarkar B., Ghosh A., De A.K., Adak M.K.	Abscisic acid induced cellular responses of sub1A QTL to aluminium toxicity in rice (Oryza sativa L.).	Ecotoxicol. Environ. Saf.	183	109600	2019		
47517	31432314	Matsubara K., Ando T., Yano M.	Late flowering in F1 hybrid rice brought about by the complementary effect of quantitative trait loci.	Genetica	147(5-6)	351-358	2019		
47518	31111914	Zheng D., Wang L., Chen L., Pan X., Lin K., Fang Y., Wang X.E., Zhang W.	Salt-Responsive Genes are Differentially Regulated at the Chromatin Levels Between Seedlings and Roots in Rice.	Plant Cell Physiol.	60(8)	1790-1803	2019		
47519	31422731	Wari D., Alamgir K.M., Mujiono K., Hojo Y., Tani A., Shinya T., Nakatani H., Galis I.	Brown planthopper honeydew-associated symbiotic microbes elicit momilactones in rice.	Plant Signal Behav	14(11)	1655335	2019		
47520	31409785	Zhao L., Wang S., Cao Z., Ouyang W., Zhang Q., Xie L., Zheng R., Guo M., Ma M., Hu Z., Sung W.K., Zhang Q., Li G., Li X.	Chromatin loops associated with active genes and heterochromatin shape rice genome architecture for transcriptional regulation.	Nat Commun	10(1)	3640	2019		
47521	31399792	Chakraborty K., Chattaopadhyay K., Nayak L., Ray S., Yeasmin L., Jena P., Gupta S., Mohanty S.K., Swain P., Sarkar R.K.	Ionic selectivity and coordinated transport of Na+ and K+ in flag leaves render differential salt tolerance in rice at the reproductive stage.	Planta	250(5)	1637-1653	2019		
47522	31447421	Xie Y.Y., Tang J.T., Yang B.W., Hu J., Liu Y.G., Chen L.T.	[Current advance on molecular genetic regulation of rice fertility].	Yi Chuan	41(8)	703-715	2019		
47523	31450622	Gupta R., Min C.W., Kim Y.J., Kim S.T.	Identification of MSP1-Induced Signaling Components in Rice Leaves by Integrated Proteomic and Phosphoproteomic Analysis.	Int J Mol Sci	20(17)		2019		
47524	31344313	Li C., Li W., Zhou Z., Chen H., Xie C., Lin Y.	A new rice breeding method: CRISPR/Cas9 system editing of the Xa13 promoter to cultivate transgene-free bacterial blight-resistant rice.	Plant Biotechnol. J.	18(2)	313-315	2020		
47525	31395025	Jia Y., Li B., Zhang Y., Zhang X., Xu Y., Li C.	Evolutionary dynamic analyses on monocot flavonoid 3'-hydroxylase gene family reveal evidence of plant-environment interaction.	BMC Plant Biol.	19(1)	347	2019		
47526	31521227	Wang H., Gao Y., Mao F., Xiong L., Mou T.	Directional upgrading of brown planthopper resistance in an elite rice cultivar by precise introgression of two resistance genes using genomics-based breeding.	Plant Sci.	288	110211	2019		
47527	31437205	Nomura T., Arakawa N., Yamamoto T., Ueda T., Adachi S., Yonemaru J.I., Abe A., Takagi H., Yokoyama T., Ookawa T.	Next generation long-culm rice with superior lodging resistance and high grain yield, Monster Rice 1.	PLoS ONE	14(8)	e0221424	2019		
47528	31077319	Nakajima T., Kawano Y., Ohtsu I., Maruyuama-Nakashita A., Allahham A., Sato M., Sawada Y., Hirai M.Y., Yokoyama T., Ohkama-Ohtsu N.	Effects of Thiosulfate as a Sulfur Source on Plant Growth, Metabolites Accumulation and Gene Expression in Arabidopsis and Rice.	Plant Cell Physiol.	60(8)	1683-1701	2019		
47529	31444356	Miao C., Wang Z., Zhang L., Yao J., Hua K., Liu X., Shi H., Zhu J.K.	The grain yield modulator MIR156 regulates seed dormancy through the gibberellin pathway in rice.	Nat Commun	10(1)	3822	2019		
47530	31419645	Gupta B.B., Selter L.L., Baranwal V.K., Arora D., Mishra S.K., Sirohi P., Poonia A.K., Chaudhary R., Kumar R., Krattinger S.G., Chauhan H.	Updated inventory, evolutionary and expression analyses of G (PDR) type ABC transporter genes of rice.	Plant Physiol. Biochem.	142	429-439	2019		
47531	31412781	Pradhan S.K., Pandit E., Nayak D.K., Behera L., Mohapatra T.	Genes, pathways and transcription factors involved in seedling stage chilling stress tolerance in indica rice through RNA-Seq analysis.	BMC Plant Biol.	19(1)	352	2019		
47532	31419646	V P., Ali K., Singh A., Vishwakarma C., Krishnan V., Chinnusamy V., Tyagi A.	Starch accumulation in rice grains subjected to drought during grain filling stage.	Plant Physiol. Biochem.	142	440-451	2019		
47533	31521212	Fu Y., Zhong X., Pan J., Liang K., Liu Y., Peng B., Hu X., Huang N.	QTLs identification for nitrogen and phosphorus uptake-related traits using ultra-high density SNP linkage.	Plant Sci.	288	110209	2019		
47534	31485470	Panda D., Mishra S.S., Mohanty S.K., Behera P.K., Lenka S.K.	Data on genetic potentiality of folk rice (<i>Oryza sativa</i> L.) genotypes from Koraput, India in reference to drought tolerance traits.	Data Brief	25	104363	2019		
47535	31393049	Bai J., Wang X., Wu H., Ling F., Zhao Y., Lin Y., Wang R.	Comprehensive construction strategy of bidirectional green tissue-specific synthetic promoters.	Plant Biotechnol. J.	18(3)	668-678	2020		
47536	31306498	Li T., Sun Y., Liu T., Wu H., An P., Shui Z., Wang J., Zhu Y., Li C., Wang Y., Jetter R., Wang Z.	TaCER1-1A is involved in cuticular wax alkane biosynthesis in hexaploid wheat and responds to plant abiotic stresses.	Plant Cell Environ.	42(11)	3077-3091	2019		
47537	31386870	Chen C.C., Gao G.J., Kao A.L., Tsai C.T., Tsai Z.C.	Two novel lipases purified from rice bran displaying lipolytic and esterification activities.	Int. J. Biol. Macromol.	139	298-306	2019		
47538	31399885	Murugaiyan V., Ali J., Mahender A., Aslam U.M., Jewel Z.A., Pang Y., Marfori-Nazarea CM., Wu L.B., Frei M., Li Z.	Mapping of genomic regions associated with arsenic toxicity stress in a backcross breeding populations of rice (Oryza sativa L.).	Rice (N Y)	12(1)	61	2019		
47539	31394718	Sultana M.H., Liu F., Alamin M., Mao L., Jia L., Chen H., Wu D., Wang Y., Fu F., Wu S., Wang W., Ye C., Zhu Q.H., Qiu J., Fan L.	Gene Modules Co-regulated with Biosynthetic Gene Clusters for Allelopathy between Rice and Barnyardgrass.	Int J Mol Sci	20(16)		2019		
47540	31468345	Li Y., Huang Y.F., Huang S.H., Kuang Y.H., Tung C.W., Liao C.T., Chuang W.P.	Genomic and phenotypic evaluation of rice susceptible check TN1 collected in Taiwan.	Botanical Studies	60(1)	19	2019		
47541	31528506	Wang Y., Zhang Y., Zhang Q., Cui Y., Xiang J., Chen H., Hu G., Chen Y., Wang X., Zhu D., Zhang Y.	Comparative transcriptome analysis of panicle development under heat stress in two rice (<i>Oryza sativa</i> L.) cultivars differing in heat tolerance.	PeerJ	7	e7595	2019		
47542	31394891	Butt H., Piatek A., Li L., S N Reddy A., M Mahfouz M.	Multiplex CRISPR Mutagenesis of the Serine/Arginine-Rich (SR) Gene Family in Rice.	Genes (Basel)	10(8)		2019		
47543	31440809	Peng X., Wang Q., Wang Y., Cheng B., Zhao Y., Zhu S.	A maize NAC transcription factor, ZmNAC34, negatively regulates starch synthesis in rice.	Plant Cell Rep.	38(12)	1473-1484	2019		
47544	31388943	Wu S., Qiu J., Gao Q.	QTL-BSA: A Bulked Segregant Analysis and Visualization Pipeline for QTL-seq.	Interdiscip Sci	11(4)	730-737	2019		
47545	31404948	Wu T.M., Huang J.Z., Oung H.M., Hsu Y.T., Tsai Y.C., Hong C.Y.	H2O2-Based Method for Rapid Detection of Transgene-Free Rice Plants from Segregating CRISPR/Cas9 Genome-Edited Progenies.	Int J Mol Sci	20(16)		2019		
47546	31447426	Zhang G.Q.	[The platform of breeding by design based on the SSSL library in rice].	Yi Chuan	41(8)	754-760	2019		
47547	31598075	Du C.Q., Lin J.Z., Dong L.A., Liu C., Tang D.Y., Yan L., Chen M.D., Liu S., Liu X.M.	Overexpression of an NADP(H)-dependent glutamate dehydrogenase gene, <i>TrGDH</i>, from <i>Trichurus</i> improves nitrogen assimilation, growth status and grain weight per plant in rice.	Breed. Sci.	69(3)	429-438	2019		
47548	31388773	Guo X., Zhong D., Xie W., He Y., Zheng Y., Lin Y., Chen Z., Han Y., Tian D., Liu W., Wang F., Wang Z., Chen S.	Functional Identification of Novel Cell Death-inducing Effector Proteins from Magnaporthe oryzae.	Rice (N Y)	12(1)	59	2019		
47549	31542696	Basith S., Manavalan B., Shin T.H., Lee G.	SDM6A: A Web-Based Integrative Machine-Learning Framework for Predicting 6mA Sites in the Rice Genome.	Mol Ther Nucleic Acids	18	131-141	2019		
47550	31527731	Ye C.Y., Tang W., Wu D., Jia L., Qiu J., Chen M., Mao L., Lin F., Xu H., Yu X., Lu Y., Wang Y., Olsen K.M., Timko M.P., Fan L.	Genomic evidence of human selection on Vavilovian mimicry.	Nat Ecol Evol	3(10)	1474-1482	2019		
47551	31544788	Mishra A., Kumar P., Shamim M., Tiwari K.K., Fatima P., Srivastava D., Singh R., Yadav P.	Genetic diversity and population structure analysis of Asian and African aromatic rice (<i>Oryza sativa</i> L.) genotypes.	J. Genet.	98		2019		
47552	31400226	Hu B., Chu C.	Nitrogen-phosphorus interplay: old story with molecular tale.	New Phytol.	225(4)	1455-1460	2020		
47553	31608027	Chen Q., Liu S.	Identification and Characterization of the Phosphate-Solubilizing Bacterium <i>Pantoea</i> sp. S32 in Reclamation Soil in Shanxi, China.	Front Microbiol	10	2171	2019		
47554	31498816	He M., Zhang J., Shen L., Xu L., Luo W., Li D., Zhai N., Zhao J., Long Y., Pei X., Yuan Q.	High-throughput sequencing analysis of microbial community diversity in response to indica and japonica bar-transgenic rice paddy soils.	PLoS ONE	14(9)	e0222191	2019		
47555	31564075	Vo K.T.X., Lee S.K., Halane M.K., Song M.Y., Hoang T.V., Kim C.Y., Park S.Y., Jeon J., Kim S.T., Sohn K.H., Jeon J.S.	Pi5 and Pii Paired NLRs Are Functionally Exchangeable and Confer Similar disease resistance Specificity.	Mol. Cells	42(9)	637-645	2019		
47556	31535313	Zhan C., Hu J., Pang Q., Yang B., Cheng Y., Xu E., Zhu P., Li Y., Zhang H., Cheng J.	Genome-wide association analysis of panicle exsertion and uppermost internode in rice (Oryza sativa L.).	Rice (N Y)	12(1)	72	2019		
47557	31557947	Wang C., Li C., Duan G., Wang Y., Zhang Y., Yang J.	Overexpression of <i>Magnaporthe Oryzae</i> Systemic Defense Trigger 1 (MoSDT1) Confers Improved Rice Blast Resistance in Rice.	Int J Mol Sci	20(19)		2019		
47558	31544777	Yadav M.K., Aravindan S., Ngangkham U., Prabhukarthikeyan S.R., Keerthana U., Raghu S., Pramesh D., Banerjee A., Roy S., Sanghamitra P., Adak T., Priyadarshinee P., Jena M., Kar M.K., Rath P.C.	Candidate screening of blast resistance donors for rice breeding.	J. Genet.	98		2019		
47559	31520232	Kim Y.A., Moon H., Park C.J.	Correction to: CRISPR/Cas9-targeted mutagenesis of Os8N3 in rice to confer resistance to Xanthomonas oryzae pv. Oryzae.	Rice (N Y)	12(1)	71	2019		
47560	31832234	Shivay Y.S., Pooniya V., Pal M., Ghasal P.C., Bana R., Jat S.L.	Coated Urea Materials for Improving Yields, Profitability, and Nutrient Use Efficiencies of Aromatic Rice.	Glob Chall	3(12)	1900013	2019		
47561	31373971	Nakano R., Ihara N., Morikawa S., Nakashima A., Kanemaki M.T., Ikegaya Y., Takeuchi H.	Auxin-mediated rapid degradation of target proteins in hippocampal neurons.	Neuroreport	30(13)	908-913	2019		
47562	31616455	Ren Q., Zhong Z., Wang Y., You Q., Li Q., Yuan M., He Y., Qi C., Tang X., Zheng X., Zhang T., Qi Y., Zhang Y.	Bidirectional Promoter-Based CRISPR-Cas9 Systems for Plant Genome Editing.	Front Plant Sci	10	1173	2019		
47563	31357245	Ren D., Cui Y., Hu H., Xu Q., Rao Y., Yu X., Zhang Y., Wang Y., Peng Y., Zeng D., Hu J., Zhang G., Gao Z., Zhu L., Chen G., Shen L., Zhang Q., Guo L., Qian Q.	AH2 encodes a MYB domain protein that determines hull fate and affects grain yield and quality in rice.	Plant J.	100(4)	813-824	2019	GS2,RL9,GW7,GL3.1,GW2,MIS2,GW8	OsGRF4, GRF4, GS2/OsGRF4, PT2, GLW2, GS2/GL2, LGS1, OsLGS1,rl9, SLL1/RL9, SLL1, OsSLL1, OsADD1, ADD1, KANADI1, AH2, OsAH2, CL1, OsCL1,GL7, OsGL7, OsGW7, qGW7, qGL7, SLG7, GL7/GW7/SLG7, qPY7, GL7/SLG7, Chalk7, OsChalk7,OsPPKL1, PPKL1, qGL3, OsPP54, PP54, OsGL3.1, qGL3/OsPPKL1,OsGW2, OsRING429, RING429, GNL44, OsGNL44,OsCR4, CR4, OsMIS2,SPL16, OsSPL16, SLP1, OsSLP1, qGW8, OsGW8
47564	31407141	Shen L., Hua Y., Fu Y., Li J., Liu Q., Jiao X., Xin G., Wang J., Wang X., Yan C., Wang K.	Erratum to: Rapid generation of genetic diversity by multiplex CRISPR/Cas9 genome editing in rice.	Sci China Life Sci	62(9)	1270	2019		
47565	31552795	Jamil M., Haider I., Kountche B.A., Al-Babili S.	Effect of D-ring C-3' methylation of strigolactone analogs on their transcription regulating activity in rice.	Plant Signal Behav	14(11)	1668234	2019		
47566	31465553	Luo X., Qin X., Liu Z., Chen D., Yu W., Zhang K., Hu D.	Determination, residue and risk assessment of trifloxystrobin, trifloxystrobin acid and tebuconazole in Chinese rice consumption.	Biomed. Chromatogr.	34(1)	e4694	2020		
47567	31541640	Dhanamjayulu P., Boga R.B., Mehta A.	Inhibition of aflatoxin B1 biosynthesis and down regulation of aflR and aflB genes in presence of benzimidazole derivatives without impairing the growth of Aspergillus flavus.	Toxicon	170	60-67	2019		
47568	31854893	Zhang Y.H., Du P., He Y., Zhong X.F., Luo H.L., Qin X.P., Xu G.	[Derivation of the Thresholds of Available Concentrations of Heavy Metals in Soil Based on Agricultural Product Safety].	Huan Jing Ke Xue	40(9)	4262-4269	2019		
47569	31486529	Tanaka W., Hirano H.Y.	Antagonistic action of TILLERS ABSENT1 and FLORAL ORGAN NUMBER2 regulates stem cell maintenance during axillary meristem development in rice.	New Phytol.	225(2)	974-984	2020		
47570	31561513	Ramkumar M.K., Senthil Kumar S., Gaikwad K., Pandey R., Chinnusamy V., Singh N.K., Singh A.K., Mohapatra T., Sevanthi A.M.	A Novel stay-green Mutant of Rice with Delayed Leaf Senescence and Better harvest index Confers drought tolerance.	Plants (Basel)	8(10)		2019		
47571	31520769	Chen J., Li H., Yang K., Wang Y., Yang L., Hu L., Liu R., Shi Z.	Melatonin facilitates lateral root development by coordinating PAO-derived hydrogen peroxide and Rboh-derived superoxide radical.	Free Radic. Biol. Med.	143	534-544	2019		
47572	31606664	Panthri M., Gupta M.	Facets of iron in arsenic exposed Oryza sativa varieties: A manifestation of plant's adjustment at morpho-biochemical and enzymatic levels.	Environ. Pollut.	255(Pt 2)	113289	2019		
47573	31429090	Zhu H., Chen C., Zeng J., Yun Z., Liu Y., Qu H., Jiang Y., Duan X., Xia R.	MicroRNA528, a hub regulator modulating ROS homeostasis via targeting of a diverse set of genes encoding copper-containing proteins in monocots.	New Phytol.	225(1)	385-399	2020		
47574	31593899	Mehrabanjoubani P., Abdolzadeh A., Sadeghipour H.R., Aghdasi M., Bagherieh-Najjar MB., Barzegargolchini B.	Silicon increases cell wall thickening and lignification in rice (Oryza sativa) root tip under excess Fe nutrition.	Plant Physiol. Biochem.	144	264-273	2019		
47575	31488854	Pradhan S.K., Pandit E., Pawar S., Baksh S.Y., Mukherjee A.K., Mohanty S.P.	Development of flash-flood tolerant and durable bacterial blight resistant versions of mega rice variety 'Swarna' through marker-assisted backcross breeding.	Sci Rep	9(1)	12810	2019		
47576	31779911	Xie K., Lu Z., Pan Y., Gao L., Hu P., Wang M., Guo S.	Leaf photosynthesis is mediated by the coordination of nitrogen and potassium: The importance of anatomical-determined mesophyll conductance to CO2 and carboxylation capacity.	Plant Sci.	290	110267	2020		
47577	31588399	Thomas D.T.T., Challabathula D., Puthur J.T.	UV-B priming of <i>Oryza sativa</i> var. Kanchana seedlings augments its antioxidative potential and gene expression of stress-response proteins under various abiotic stresses.	3 Biotech	9(10)	375	2019		
47578	31549233	Madhusudhan P., Sinha P., Rajput L.S., Bhattacharya M., Sharma T., Bhuvaneshwari V., Gaikwad K., Krishnan S.G., Singh A.K.	Effect of temperature on Pi54-mediated leaf Blast resistance in rice.	World J. Microbiol. Biotechnol.	35(10)	148	2019		
47579	31478602	Eguen T., Ariza J.G., Brambilla V., Sun B., Bhati K.K., Fornara F., Wenkel S.	Control of flowering in rice through synthetic microProteins.	J Integr Plant Biol			2019		
47580	31539524	Deng T., Huang W., Ren J., Ma X., Ge Y., Chen Y.	Verification and applicability of endogenous reference genes for quantifying GM rice by digital PCR.	Anal. Biochem.	587	113442	2019		
47581	31549182	Han Z., Hu G., Liu H., Liang F., Yang L., Zhao H., Zhang Q., Li Z., Zhang Q., Xing Y.	Bin-based genome-wide association analyses improve power and resolution in QTL mapping and identify favorable alleles from multiple parents in a four-way MAGIC rice population.	Theor. Appl. Genet.	133(1)	59-71	2020		
47582	31533278	Chen H., Li H., Lu X., Chen L., Liu J., Wu H.	Identification and Expression Analysis of GRAS Transcription Factors to Elucidate Candidate Genes Related to Stolons, Fruit Ripening and Abiotic Stresses in Woodland Strawberry (<i>Fragaria vesca</i>).	Int J Mol Sci	20(18)		2019		
47583	31535976	De la Concepcion JC., Franceschetti M., MacLean D., Terauchi R., Kamoun S., Banfield M.J.	Protein engineering expands the effector recognition profile of a rice NLR immune receptor.	Elife	8		2019		
47584	31369175	Lavarenne J., Gonin M., Guyomarc'h S., Rouster J., Champion A., Sallaud C., Laplaze L., Gantet P., Lucas M.	Inference of the gene regulatory network acting downstream of CROWN ROOTLESS?1 in rice reveals a regulatory cascade linking genes involved in auxin signaling, crown root initiation, and root meristem specification and maintenance.	Plant J.	100(5)	954-968	2019		
47585	31486580	Jin J., Gui S., Li Q., Wang Y., Zhang H., Zhu Z., Chen H., Sun Y., Zou Y., Huang X., Ding Y.	The transcription factor GATA10 regulates fertility conversion of a two-line hybrid tms5 mutant rice via the modulation of UbL40 expression.	J Integr Plant Biol			2019	ERF141,TMS5,UBL40-4,ERF134,ERF65,UBL40-1,MADS7,EPR1,UBL40-2,GATA10,MADS50	OsERF#141, OsERF141, AP2/EREBP#019, AP2/EREBP19,TRZ1, OsTRZ1, OsaTRZ1, OsTMS5,UbL40-4, OsUbL40-4,OsERF#134, OsERF134, AP2/EREBP#011, AP2/EREBP11, DLN46, OsDLN46,OsERF#065, OsERF065, OsERF65, AP2/EREBP#107, AP2/EREBP107,UbL40-1, OsUbL40-1,OsMADS7, OsMADS45, FDRMADS1, RMADS216, AGL6, M79, MADS45, Os MADS7, Os MADS45, OsMADS7/45,OsEPR1, OsLHY, LHY,UbL40-2, OsUbL40-2,OsGATA10,OsMADS50, AGL20, SOC1, OsSOC1, RMADS208, OsSOC1/ OsMADS50/DTH3, DTH3, OsDTH3
47586	31499174	Shearman J.R., Vejchasarn P., Naktang C., Phansenee Y., Jomchai N., Lanceras-Siangliw J., Tangphatsornruang S., Toojinda T.	Rice height QTLs in KDML105 chromosome segment substitution lines.	Genomics			2019		
47587	31576246	Zhou Q., Jia C., Ma W., Cui Y., Jin X., Luo D., Min X., Liu Z.	MYB transcription factors in alfalfa (<i>Medicago sativa</i>): genome-wide identification and expression analysis under abiotic stresses.	PeerJ	7	e7714	2019		
47588	31623771	Yang M., Yang J., Su L., Sun K., Li D., Liu Y., Wang H., Chen Z., Guo T.	Metabolic profile analysis and identification of key metabolites during rice seed germination under low-temperature stress.	Plant Sci.	289	110282	2019		
47589	31519149	Tsai Y.C., Chen K.C., Cheng T.S., Lee C., Lin S.H., Tung C.W.	Chlorophyll fluorescence analysis in diverse rice varieties reveals the positive correlation between the seedlings salt tolerance and photosynthetic efficiency.	BMC Plant Biol.	19(1)	403	2019		
47590	31533315	Zhu M., Xie H., Wei X., Dossa K., Yu Y., Hui S., Tang G., Zeng X., Yu Y., Hu P., Wang J.	WGCNA Analysis of Salt-Responsive Core Transcriptome Identifies Novel Hub Genes in Rice.	Genes (Basel)	10(9)		2019		
47591	31535306	Toriyama K., Kazama T., Sato T., Fukuta Y., Oka M.	Development of cytoplasmic male sterile lines and restorer lines of various elite Indica Group rice cultivars using CW-CMS/Rf17 system.	Rice (N Y)	12(1)	73	2019		
47592	31598076	Phi C.N., Fujita D., Yamagata Y., Yoshimura A., Yasui H.	High-resolution mapping of <i>GRH6</i>, a gene from <i>Oryza nivara</i> (Sharma et Shastry) conferring resistance to green rice leafhopper (<i>Nephotettix cincticeps</i> Uhler).	Breed. Sci.	69(3)	439-446	2019		
47593	31502096	Yang D., Tang J., Yang D., Chen Y., Ali J., Mou T.	Improving rice blast resistance of Feng39S through molecular marker-assisted backcrossing.	Rice (N Y)	12(1)	70	2019		
47594	31569360	Gull S., Haider Z., Gu H., Raza Khan RA., Miao J., Wenchen T., Uddin S., Ahmad I., Liang G.	InDel Marker Based Estimation of Multi-Gene Allele Contribution and Genetic Variations for Grain Size and Weight in Rice (<i>Oryza sativa</i> L.).	Int J Mol Sci	20(19)		2019		
47595	31554149	Hartmann J., Asch F.	Extraction, Storage Duration, and Storage Temperature Affect the Activity of Ascorbate Peroxidase, glutathione reductase, and superoxide dismutase in Rice Tissue.	Biology (Basel)	8(4)		2019		
47596	31541990	Singh S.P., Pandey S., Mishra N., Giri V.P., Mahfooz S., Bhattacharya A., Kumari M., Chauhan P., Verma P., Nautiyal C.S., Mishra A.	Supplementation of Trichoderma improves the alteration of nutrient allocation and transporter genes expression in rice under nutrient deficiencies.	Plant Physiol. Biochem.	143	351-363	2019		
47597	31487931	Gao J., Dai G., Zhou W., Liang H., Huang J., Qing D., Chen W., Wu H., Yang X., Li D., Gao L., Deng G.	Mapping and Identifying a Candidate Gene <i>Plr4</i>, a Recessive Gene Regulating Purple Leaf in Rice, by Using Bulked Segregant and Transcriptome Analysis with Next-Generation Sequencing.	Int J Mol Sci	20(18)		2019		
47598	31557269	Cai Z., Jia P., Zhang J., Gan P., Shao Q., Jin G., Wang L., Jin J., Yang J., Luo J.	Genetic analysis and fine mapping of a qualitative trait locus wpb1 for albino panicle branches in rice.	PLoS ONE	14(9)	e0223228	2019		
47599	31502559	Xu Y., Bi L., Yu Z., Lin C., Gan L., Zhu L., Li H., Song Y., Zhu C.	Comprehensive transcriptomics and proteomics analyses of <i>rice stripe virus</i>-resistant transgenic rice.	J. Biosci.	44(4)		2019		
47600	31575043	Baillo E.H., Kimotho R.N., Zhang Z., Xu P.	Transcription Factors Associated with Abiotic and Biotic Stress Tolerance and Their Potential for Crops Improvement.	Genes (Basel)	10(10)		2019		
47601	31549254	Wu Y.S., Yang C.Y.	Ethylene-mediated signaling confers thermotolerance and regulates transcript levels of heat shock factors in rice seedlings under heat stress.	Botanical Studies	60(1)	23	2019		
47602	31732053	Virdi A.S., Singh N., Pal P., Kaur P., Kaur A.	Evaluation of head and broken rice of long grain Indica rice cultivars: Evidence for the role of starch and protein composition to head rice recovery.	Food Res. Int.	126	108675	2019		
47603	31481724	Zhang X., Liu H., Zhang S., Wang J., Wei C.	NH4+-N alleviates iron deficiency in rice seedlings under calcareous conditions.	Sci Rep	9(1)	12712	2019		
47604	31569590	Ogami T., Yasui H., Yoshimura A., Yamagata Y.	Identification of anther length QTL and Construction of Chromosome Segment Substitution Lines of <i>Oryza longistaminata</i>.	Plants (Basel)	8(10)		2019		
47605	31419052	Yu Y., Zhou Y.F., Feng Y.Z., He H., Lian J.P., Yang Y.W., Lei M.Q., Zhang Y.C., Chen Y.Q.	Transcriptional landscape of pathogen-responsive lncRNAs in rice unveils the role of ALEX1 in jasmonate pathway and disease resistance.	Plant Biotechnol. J.	18(3)	679-690	2020	ALEX1,JMT1,PR1A,AOC,BHLH9,PR10A,HPL3,AOS2,OG1,PR1B,RSOSPR10,JAR1,JAR2,_,TIFY10C	OsALEX1,JMT-1, OsJMT-1, OsJMT1,OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1, OsPR1b, PR1alpha, OsPR1alpha,OsAOC, AOC1, OsAOC1, HB, CPM2, OsAOC4, AOC4,OsbHLH009, bHLH009, OsMYC2, MYC2,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsHPL3, CYP74B2, OsCYP74B2,OsAOS2, CYP74A2, OsAOS, OsAOS1,OsOPR7, OPR7, OsOPR13, OsOPR3, OsOPR5, OsOPR9, OsOPR08-1,  OPR13, OPR3, OPR5, OPR9, OPR08-1, OsOPR8, OPR8,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1, OsPR1a, PR1a,RSOsPR10, RsOsPR10a, OsPR10a, OsPR10alpha, OsPR10, PR10, OsBETV1, BETV1,OsJAR1, OsGH3.5, GH3.5, OsGH3-5, GH3-5,OsJAR2, OsGH3.3, GH3.3, OsGH3-3, JAR2/GH3-3, GH3-3, OsGH3.3/OsJAR2,Lox2:Os:1, OsLOX9, LOX9, OsLOX8, LOX8, OsLOX2, LOX2, OsRLL, OsHI-LOX, HI-LOX, RLL2 LOX, RLL2, Lox2osPil, OsLOX2;1, LOX2;1, OsLOX1, OsLOX7, LOX7,OsJAZ7, JAZ7, OsJAZ 8, OsJAZ8, Os-JAZ8, JAZ8, OsTIFY10c, OsTIFY10c/OsJAZ8
47606	31620160	Aliaga-Franco N., Zhang C., Presa S., Srivastava A.K., Granell A., Alabad? D., Sadanandom A., Bl?zquez MA., Minguet E.G.	Identification of Transgene-Free CRISPR-Edited Plants of Rice, Tomato, and <i>Arabidopsis</i> by Monitoring DsRED Fluorescence in Dry Seeds.	Front Plant Sci	10	1150	2019		
47607	31574369	Yang Y., Hu H., Fu Q., Zhu J., Huang G.	Water management of alternate wetting and drying reduces the accumulation of arsenic in brown rice - as dynamic study from rhizosphere soil to rice.	Ecotoxicol. Environ. Saf.	185	109711	2019		
47608	31527548	Mei Q., Yang Y., Ye S., Liang W., Wang X., Zhou J., Yu C., Yan C., Chen J.	H2O2 Induces Association of RCA with the Thylakoid Membrane to Enhance Resistance of Oryza meyeriana to Xanthomonas oryzae pv. oryzae.	Plants (Basel)	8(9)		2019		
47609	31433495	Zafar S.A., Patil S.B., Uzair M., Fang J., Zhao J., Guo T., Yuan S., Uzair M., Luo Q., Shi J., Schreiber L., Li X.	DEGENERATED PANICLE AND PARTIAL STERILITY 1 (DPS1) encodes a cystathionine beta-synthase domain containing protein required for anther cuticle and panicle development in rice.	New Phytol.	225(1)	356-375	2020	EFA27,CYP704B2,MS2,FAR4,TRX20,DPS1,TRX1,_	OsEFA27, OsClo5, Clo5, RD20, OsRD20,OsCYP704B2,OsMS2, OsDPW, DPW, DPW1, OsDPW1, OsFAR2, FAR2,OsFAR4,OsTRXh9, TRXH9, OsTrx20, Trx20,OsCBSDUF1, OsCBSDUF1a, OsCBSDUF1b, CBSDUF1, CBSDUF1a, CBSDUF1b,OsTRXh7, TRXh7, OsTrx1, Trx1, OsTrx01, Trx01,
47610	31572411	Jung H.I., Kong M.S., Lee B.R., Kim T.H., Chae M.J., Lee E.J., Jung G.B., Lee C.H., Sung J.K., Kim Y.H.	Exogenous Glutathione Increases Arsenic Translocation Into Shoots and Alleviates Arsenic-Induced oxidative stress by Sustaining Ascorbate-Glutathione Homeostasis in Rice Seedlings.	Front Plant Sci	10	1089	2019		
47611	31485824	To H.T.M., Nguyen H.T., Dang N.T.M., Nguyen N.H., Bui T.X., Lavarenne J., Phung N.T.P., Gantet P., Lebrun M., Bellafiore S., Champion A.	Unraveling the Genetic Elements Involved in Shoot and Root Growth Regulation by Jasmonate in Rice Using a Genome-Wide Association Study.	Rice (N Y)	12(1)	69	2019		
47612	31542706	Jabbar B., Iqbal M.S., Batcho A.A., Nasir I.A., Rashid B., Husnain T., Henry R.J.	Target prediction of candidate miRNAs from Oryza sativa for silencing the RYMV genome.	Comput Biol Chem	83	107127	2019		
47613	31559749	Chen W., Li H., Qiu J.	[Ectopic expression of archaeal TRAM-encoding genes in rice improves its drought-tolerance].	Sheng Wu Gong Cheng Xue Bao	35(9)	1676-1685	2019		
47614	31469505	Hua K., Tao X., Liang W., Zhang Z., Gou R., Zhu J.K.	Simplified adenine base editors improve adenine base editing efficiency in rice.	Plant Biotechnol. J.	18(3)	770-778	2020		
47615	31548847	Momen M., Campbell M.T., Walia H., Morota G.	Utilizing trait networks and structural equation models as tools to interpret multi-trait genome-wide association studies.	Plant Methods	15	107	2019		
47616	31552096	Lv H., Dao F.Y., Guan Z.X., Zhang D., Tan J.X., Zhang Y., Chen W., Lin H.	iDNA6mA-Rice: A Computational Tool for Detecting N6-Methyladenine Sites in Rice.	Front Genet	10	793	2019		
47617	31570974	Nubankoh P., Wanchana S., Saensuk C., Ruanjaichon V., Cheabu S., Vanavichit A., Toojinda T., Malumpong C., Arikit S.	QTL-seq reveals genomic regions associated with spikelet fertility in response to a high temperature in rice (Oryza sativa L.).	Plant Cell Rep.	39(1)	149-162	2020		
47618	31509496	Zhang Y., Wang J., Yao Y., Jin X., Correll J., Wang L., Pan Q.	Dynamics of Race Structures of the Rice Blast Pathogen Population in Heilongjiang Province, China From 2006 Through 2015.	Plant Dis.	103(11)	2759-2763	2019		
47619	31490711	Kudo H., Tsuboi H., Asashima H., Takahashi H., Ono Y., Abe S., Honda F., Kondo Y., Wakasa Y., Takaiwa F., Takano M., Matsui M., Matsumoto I., Sumida T.	Transgenic rice seeds expressing altered peptide ligands against the M3 muscarinic acetylcholine receptor suppress experimental sialadenitis-like Sj?gren's syndrome.	Modern Rheumatology		1-10	2019		
47620	31541643	Urano D., Leong R., Wu T.Y., Jones A.M.	Quantitative morphological phenomics of rice G protein mutants portend autoimmunity.	Dev. Biol.	457(1)	83-90	2020		
47621	31521658	Almeida R.L.J., Dos Santos Pereira T., de Andrade Freire V., Santiago ?M., Oliveira H.M.L., de Sousa Conrado L., de Gusm?o RP.	Influence of enzymatic hydrolysis on the properties of red rice starch.	Int. J. Biol. Macromol.	141	1210-1219	2019		
47622	31616452	Van Andel T., Veltman M.A., Bertin A., Maat H., Polime T., Hille Ris Lambers D., Tjoe Awie J., De Boer H., Manzanilla V.	Hidden Rice Diversity in the Guianas.	Front Plant Sci	10	1161	2019		
47623	31522344	Pereira A., Tcacenco F.A., Klabunde G.H.F., de Andrade A.	Detecting acetyl-coenzyme a carboxylase resistance gene in rice (Oryza sativa L.).	Mol. Biol. Rep.	46(6)	6271-6276	2019		
47624	31544784	Moonsap P., Laksanavilat N., Sinumporn S., Tasanasuwan P., Kate-Ngam S., Jantasuriyarat C.	Genetic diversity of Indo-China rice varieties using ISSR, SRAP and InDel markers.	J. Genet.	98		2019		
47625	31418955	Ying H., Yin Y., Zheng H., Wang Y., Zhang Q., Xue Y., Stefanovski D., Cui Z., Dou Z.	Newer and select maize, wheat, and rice varieties can help mitigate N footprint while producing more grain.	Glob Chang Biol	25(12)	4273-4281	2019		
47626	31355982	Li K., Wang D., Gong L., Lyu Y., Guo H., Chen W., Jin C., Liu X., Fang C., Luo J.	Comparative analysis of metabolome of rice seeds at three developmental stages using a recombinant inbred line population.	Plant J.	100(5)	908-922	2019		
47627	31572408	Wang T., Li Y., Fu Y., Xie H., Song S., Qiu M., Wen J., Chen M., Chen G., Tian Y., Li C., Yuan D., Wang J., Li L.	Mutation at Different Sites of Metal Transporter Gene <i>OsNramp5</i> Affects Cd Accumulation and Related Agronomic Traits in Rice (<i>Oryza</i> sativa L.).	Front Plant Sci	10	1081	2019		
47628	31544012	Luo Y., Fang B., Wang W., Yang Y., Rao L., Zhang C.	Genome-wide analysis of the rice J-protein family: identification, genomic organization, and expression profiles under multiple stresses.	3 Biotech	9(10)	358	2019		
47629	31502576	Kandaswamy R., Ramasamy M.K., Palanivel R., Balasundaram U.	Impact of <i>Pseudomonas putida</i> RRF3 on the root transcriptome of rice plants: Insights into defense response, secondary metabolism and root exudation.	J. Biosci.	44(4)		2019		
47630	31494982	Liu X., Sun S., Wu Y., Zhou Y., Gu S., Yu H., Yi C., Gu M., Jiang J., Liu B., Zhang T., Gong Z.	Dual-color oligo-FISH can reveal chromosomal variations and evolution in Oryza species.	Plant J.	101(1)	112-121	2020		
47631	31731501	Shiragaki K., Iizuka T., Ichitani K., Kuboyama T., Morikawa T., Oda M., Tezuka T.	<i>HWA1</i>- and <i>HWA2</i>-Mediated Hybrid Weakness in Rice Involves Cell Death, Reactive Oxygen Species Accumulation, and disease resistance-Related Gene Upregulation.	Plants (Basel)	8(11)		2019		
47632	31583492	Mo Z., Li Y., Nie J., He L., Pan S., Duan M., Tian H., Xiao L., Zhong K., Tang X.	Nitrogen application and different water regimes at booting stage improved yield and 2-acetyl-1-pyrroline (2AP) formation in fragrant rice.	Rice (N Y)	12(1)	74	2019		
47633	31632426	Hu A.Y., Zheng M.M., Sun L.M., Zhao X.Q., Shen R.F.	Ammonium Alleviates Manganese Toxicity and Accumulation in Rice by Down-Regulating the Transporter Gene <i>OsNramp5</i> Through Rhizosphere Acidification.	Front Plant Sci	10	1194	2019		
47634	31763028	Xie W., Ashraf U., Zhong D., Lin R., Xian P., Zhao T., Feng H., Wang S., Duan M., Tang X., Mo Z.	Application of gamma-aminobutyric acid (GABA) and nitrogen regulates aroma biochemistry in fragrant rice.	Food Sci Nutr	7(11)	3784-3796	2019		
47635	31353406	Borghi G.L., Moraes T.A., G?nther M., Feil R., Mengin V., Lunn J.E., Stitt M., Arrivault S.	Relationship between irradiance and levels of Calvin-Benson cycle and other intermediates in the model eudicot Arabidopsis and the model monocot rice.	J. Exp. Bot.	70(20)	5809-5825	2019		
47636	31653103	Toae R., Sriroth K., Rojanaridpiched C., Vichukit V., Chotineeranat S., Wansuksri R., Chatakanonda P., Piyachomkwan K.	Outstanding Characteristics of Thai Non-GM Bred Waxy Cassava Starches Compared with Normal Cassava Starch, Waxy Cereal Starches and Stabilized Cassava Starches.	Plants (Basel)	8(11)		2019		
47637	31779913	Hwang S.K., Koper K., Okita T.W.	The plastid phosphorylase as a multiple-role player in plant metabolism.	Plant Sci.	290	110303	2020		
47638	31659337	Oliva R., Ji C., Atienza-Grande G., Huguet-Tapia JC., Perez-Quintero A., Li T., Eom J.S., Li C., Nguyen H., Liu B., Auguy F., Sciallano C., Luu V.T., Dossa G.S., Cunnac S., Schmidt S.M., Slamet-Loedin IH., Vera Cruz C., Szurek B., Frommer W.B., White F.F., Yang B.	Broad-spectrum resistance to bacterial blight in rice using genome editing.	Nat. Biotechnol.	37(11)	1344-1350	2019		
47639	31683634	Tomita M., Tanaka J.	Semidwarf Gene <i>d60</i> Affected by Ubiquitous Gamete Lethal Gene <i>gal</i> Produced Rare Double Dwarf with <i>d30</i> via Recombination Breaking Repulsion-Phase Linkage on Rice Chromosome 2.	Genes (Basel)	10(11)		2019		
47640	31627334	Sun H., Guo X., Xu F., Wu D., Zhang X., Lou M., Luo F., Xu G., Zhang Y.	Overexpression of <i>OsPIN2</i> Regulates Root Growth and Formation in Response to Phosphate Deficiency in Rice.	Int J Mol Sci	20(20)		2019		
47641	31623139	Kang C., Sun F., Yan L., Li R., Bai J., Caetano-Anoll?s G.	Genome-Wide Identification and Characterization of the vacuolar H+-ATPase Subunit H Gene Family in Crop Plants.	Int J Mol Sci	20(20)		2019		
47642	32030158	Safaei P., Aghaee E.M., Khaniki G.J., Afshari S.A.K., Rezaie S.	A simple and accurate PCR method for detection of genetically modified rice.	J Environ Health Sci Eng	17(2)	847-851	2019		
47643	31854835	Wang Y.Q., Zhu L.N., Li K., Wang Q., Wang K., Guo Y.B., Li H.F.	[Absorption and Transportation of Selenium Nanoparticles in Wheat and Rice].	Huan Jing Ke Xue	40(10)	4654-4660	2019		
47644	31673871	Luo L., Wang P., Zhai Z., Su P., Tan X., Zhang D., Zhang Z., Liu Y.	The effects of Rhodopseudomonas palustris PSB06 and CGA009 with different agricultural applications on rice growth and rhizosphere bacterial communities.	AMB Express	9(1)	173	2019		
47645	31655574	Choudhary P., Das S., Chakdar H., Singh A., Goswami S.K., Saxena A.K.	Rapid high throughput template preparation (rHTTP) method: a novel cost effective method of direct PCR for a wide range of plants.	BMC Biotechnol.	19(1)	69	2019		
47646	31632431	Nagayama T., Nakamura A., Yamaji N., Satoh S., Furukawa J., Iwai H.	Changes in the Distribution of Pectin in Root Border Cells Under Aluminum Stress.	Front Plant Sci	10	1216	2019		
47647	31575938	Wan P.J., Zhou R.N., Nanda S., He J.C., Yuan S.Y., Wang W.X., Lai F.X., Fu Q.	Phenotypic and transcriptomic responses of two Nilaparvata lugens populations to the Mudgo rice containing Bph1.	Sci Rep	9(1)	14049	2019		
47648	31683680	Tomita M., Yazawa S., Uenishi Y.	Identification of Rice Large Grain Gene <i>GW2</i> by Whole-Genome Sequencing of a Large Grain-Isogenic Line Integrated with Japonica Native Gene and Its Linkage Relationship with the Co-integrated Semidwarf Gene <i>d60</i> on Chromosome 2.	Int J Mol Sci	20(21)		2019		
47649	31707299	Chaibub A.A., Sousa T.P., Ara?jo LG., Filippi M.C.C.	Molecular and morphological characterization of rice phylloplane fungi and determination of the antagonistic activity against rice pathogens.	Microbiol. Res.	231	126353	2020		
47650	31659829	Tao Y., Zhao X., Wang X., Hathorn A., Hunt C., Cruickshank A.W., van Oosterom EJ., Godwin I.D., Mace E.S., Jordan D.R.	Large-scale GWAS in sorghum reveals common genetic control of grain size.among cereals.	Plant Biotechnol. J.			2019		
47651	31615063	Guo H., Wu T., Li S., He Q., Yang Z., Zhang W., Gan Y., Sun P., Xiang G., Zhang H., Deng H.	The Methylation Patterns and Transcriptional Responses to Chilling Stress at the Seedling Stage in Rice.	Int J Mol Sci	20(20)		2019		
47652	31597279	Zhen X., Li X., Yu J., Xu F.	<i>OsATG8c</i>-Mediated Increased Autophagy Regulates the Yield and Nitrogen Use Efficiency in Rice.	Int J Mol Sci	20(19)		2019		
47653	31540915	Su Y., Liu J., Liang W., Dou Y., Fu R., Li W., Feng C., Gao C., Zhang D., Kang Z., Li H.	Wheat AGAMOUS LIKE 6 transcription factors function in stamen development by regulating the expression of <i>Ta APETALA3</i>.	Development	146(20)		2019		
47654	31583438	Nishimura H., Himi E., Eun C.H., Takahashi H., Qian Q., Tsugane K., Maekawa M.	Transgenerational activation of an autonomous DNA transposon, Dart1-24, by 5-azaC treatment in rice.	Theor. Appl. Genet.	132(12)	3347-3355	2019		
47655	31612637	Wang Z.L., Wang T.Z., Zhu H.F., Pan H.B., Yu X.P.	Diversity and dynamics of microbial communities in brown planthopper at different developmental stages revealed by high-throughput amplicon sequencing.	Insect Science			2019		
47656	31639558	Chang J., Cheong B.E., Natera S., Roessner U.	Morphological and metabolic responses to salt stress of rice (Oryza sativa L.) cultivars which differ in salinity tolerance.	Plant Physiol. Biochem.	144	427-435	2019		
47657	31671610	Tomita M., Ishimoto K.	Rice Novel Semidwarfing Gene <i>d60</i> Can Be as Effective as Green Revolution Gene <i>sd1</i>.	Plants (Basel)	8(11)		2019		
47658	31529551	Hu L., Li N., Zhang Z., Meng X., Dong Q., Xu C., Gong L., Liu B.	CG hypomethylation leads to complex changes in DNA methylation and transpositional burst of diverse transposable elements in callus cultures of rice.	Plant J.	101(1)	188-203	2020		
47659	31619750	Perera I., Fukushima A., Akabane T., Horiguchi G., Seneweera S., Hirotsu N.	Expression regulation of myo-inositol 3-phosphate synthase 1 (INO1) in determination of phytic acid accumulation in rice grain.	Sci Rep	9(1)	14866	2019		
47660	31638864	Fukuta Y., Telebanco-Yanoria MJ., Hayashi N., Yanagihara S., Machungo C.W., Makihara D.	Pathogenicities of Rice Blast (<i>Pyricularia oryzae</i> Cavara) Isolates From Kenya.	Plant Dis.	103(12)	3181-3188	2019		
47661	31621230	A LB., Yao H.Z., Song Y.F., Fei Y.H., She D.L.	[Effects of soil structure improvement on chlorophyll fluorescence parameters and yield of rice in a coastal reclamation region].	Ying Yong Sheng Tai Xue Bao	30(10)	3435-3442	2019		
47662	31779907	Zhu X., Ze M., Yin J., Chern M., Wang M., Zhang X., Deng R., Li Y., Liao H., Wang L., Tu B., Song L., He M., Li S., Wang W.M., Chen X., Wang J., Li W.	A phosphofructokinase B-type carbohydrate kinase family protein, PFKB1, is essential for chloroplast development at early seedling stage in rice.	Plant Sci.	290	110295	2020	RBCL,RPOA,RPOC1,RPOB,REY(K2),PSBA,ELL,CAB2R,PSAA,HEMA,YGL98	rbcL, rbcA, OsrbcL,rope, rpoalpha, Rpoalpha, rope, RpoA ,rpoC1, RPO beta', RPObeta', OsRPOC1,rpoB, RpoB, Rpobeta,OsPFKB1, PFKB1,PsbA, psbA, OsPsbA, PSBD1, OsPSBD1, psbD1,chlI, OsChlI, ChlI, CHLI, OsCHLI, OsCHLI/ELL, OsELL,Oscab2R, CAB-2, OsLhcp, Lhcb1, Lhcb1a, OsLhcb1, OsLhcb1a ,PsaA, psaA, PsAA1, psaA1,HEMA1, OsHEMA, GluTR, OsHEMA1, hemA,OsChlD, ChlD, CHLD, OsCHLD, Ygl7, YGL3, OsvWA12, vWA12
47663	31854833	Li N., He H.Z., Feng A.X., Li W., Jiang Z.M., Wei S.Q.	[Safe Utilization of Paddy Soils Lightly Polluted with Cadmium in Western Chongqing].	Huan Jing Ke Xue	40(10)	4637-4646	2019		
47664	31328224	Fu S., Lu Y., Zhang X., Yang G., Chao D., Wang Z., Shi M., Chen J., Chao D.Y., Li R., Ma J.F., Xia J.	The ABC transporter ABCG36 is required for cadmium tolerance in rice.	J. Exp. Bot.	70(20)	5909-5918	2019		
47665	31529521	Gupta S.D., Levey M., Schulze S., Karki S., Emmerling J., Streubel M., Gowik U., Paul Quick W., Westhoff P.	The C4 Ppc promoters of many C4 grass species share a common regulatory mechanism for gene expression in the mesophyll cell.	Plant J.	101(1)	204-216	2020		
47666	31695720	Henry R.J.	Australian Wild Rice Populations: A Key Resource for Global Food Security.	Front Plant Sci	10	1354	2019		
47667	31779890	Feng B.H., Li G.Y., Islam M., Fu W.M., Zhou Y.Q., Chen T.T., TAO L.X., FU G.F.	Strengthened antioxidant capacity improves photosynthesis by regulating stomatal aperture and ribulose-1,5-bisphosphate carboxylase/oxygenase activity.	Plant Sci.	290	110245	2020		
47668	31587093	Miyakawa T., Xu Y., Tanokura M.	Molecular basis of strigolactone perception in root-parasitic plants: aiming to control its germination with strigolactone agonists/antagonists.	Cell. Mol. Life Sci.			2019		
47669	31586108	Yadav S., Sandhu N., Singh V.K., Catolos M., Kumar A.	Genotyping-by-sequencing based QTL mapping for rice grain yield under reproductive stage drought stress tolerance.	Sci Rep	9(1)	14326	2019		
47670	31583464	Verstraeten B., De Smet L., Kyndt T., De Meyer T.	Selection of miRNA reference genes for plant defence studies in rice (Oryza sativa).	Planta	250(6)	2101-2110	2019		
47671	31681346	Masuda H., Aung M.S., Kobayashi T., Hamada T., Nishizawa N.K.	Enhancement of Iron Acquisition in Rice by the mugineic acid synthase gene With Ferric Iron Reductase Gene and <i>OsIRO2</i> Confers Tolerance in Submerged and Nonsubmerged Calcareous Soils.	Front Plant Sci	10	1179	2019		
47672	31659429	Bo C., Chen H., Luo G., Li W., Zhang X., Ma Q., Cheng B., Cai R.	Maize WRKY114 gene negatively regulates salt-stress tolerance in transgenic rice.	Plant Cell Rep.	39(1)	135-148	2020		
47673	31652646	Kang K., Shim Y., Gi E., An G., Paek N.C.	Mutation of <i>ONAC096</i> Enhances grain yield by Increasing panicle number and Delaying leaf senescence during Grain Filling in Rice.	Int J Mol Sci	20(20)		2019		
47674	31475433	Yichie Y., Hasan M.T., Tobias P.A., Pascovici D., Goold H.D., Van Sluyter SC., Roberts T.H., Atwell B.J.	Salt-Treated Roots of Oryza australiensis Seedlings are Enriched with Proteins Involved in Energetics and Transport.	Proteomics	19(19)	e1900175	2019		
47675	31885402	Balachiranjeevi C.H., Prahalada G.D., Mahender A., Jamaloddin M., Sevilla M.A.L., Marfori-Nazarea CM., Vinarao R., Sushanto U., Baehaki S.E., Li Z.K., Ali J.	Identification of a novel locus, <i>BPH38</i>(t), conferring resistance to brown planthopper (<i>Nilaparvata lugens</i> Stal.) using early backcross population in rice (<i>Oryza sativa</i> L.).	Euphytica	215(11)	185	2019		
47676	31816723	Herath I., Kumarathilaka P., Bundschuh J., Marchuk A., Rinklebe J.	A fast analytical protocol for simultaneous speciation of arsenic by Ultra-High Performance Liquid Chromatography (UHPLC) hyphenated to Inductively Coupled Plasma Mass Spectrometry (ICP-MS) as a modern advancement in liquid chromatography approaches.	Talanta	208	120457	2020		
47677	31623350	Li Q.F., Lu J., Zhou Y., Wu F., Tong H.N., Wang J.D., Yu J.W., Zhang C.Q., Fan X.L., Liu Q.Q.	Abscisic Acid Represses Rice Lamina Joint Inclination by Antagonizing Brassinosteroid Biosynthesis and Signaling.	Int J Mol Sci	20(19)		2019		
47678	31654191	Wang X.J., Dong Y.F., Jin X., Yang J.T., Wang Z.X.	The application of gene splitting technique for controlling transgene flow in rice.	Transgenic Res.	29(1)	69-80	2020		
47679	31666657	Quibod I.L., Atieza-Grande G., Oreiro E.G., Palmos D., Nguyen M.H., Coronejo S.T., Aung E.E., Nugroho C., Roman-Reyna V., Burgos M.R., Capistrano P., Dossa S.G., Onaga G., Saloma C., Cruz C.V., Oliva R.	The Green Revolution shaped the population structure of the rice pathogen Xanthomonas oryzae pv. oryzae.	ISME J	14(2)	492-505	2020		
47680	31698329	Banerjee A., Roychoudhury A.	Melatonin application reduces fluoride uptake and toxicity in rice seedlings by altering abscisic acid, gibberellin, auxin and antioxidant homeostasis.	Plant Physiol. Biochem.	145	164-173	2019		
47681	31630460	Murata K., Kitano T., Yoshimoto R., Takata R., Ube N., Ueno K., Ueno M., Yabuta Y., Teraishi M., Holland C.K., Jander G., Okumoto Y., Mori N., Ishihara A.	Natural variation in the expression and catalytic activity of a naringenin 7-O-methyltransferase influences antifungal defenses in diverse rice cultivars.	Plant J.			2019		
47682	31656725	Han Y., Teng K., Nawaz G., Feng X., Usman B., Wang X., Luo L., Zhao N., Liu Y., Li R.	Generation of semi-dwarf rice (<i>Oryza sativa</i> L.) lines by CRISPR/Cas9-directed mutagenesis of <i>OsGA20ox2</i> and proteomic analysis of unveiled changes caused by mutations.	3 Biotech	9(11)	387	2019		
47683	31623553	Yi X., Shi S., Wang P., Chen Y., Lu Q., Wang T., Zhou X., Zhong G.	Characterizing potential repelling volatiles for "push-pull" strategy against stem borer: a case study in Chilo auricilius.	BMC Genomics	20(1)	751	2019		
47684	31763383	Ilgac M., Can G., Cetin K.O.	A dataset on void ratio limits and their range for cohesionless soils.	Data Brief	27	104696	2019		
47685	31659455	Cheng X., Sun L., Li R., Huang Y., Xu H., Wang Z., Li Z.L., Jiang H., Ma J.	Organic polymer dot-based fluorometric determination of the activity of horseradish peroxidase and of the concentrations of glucose and the insecticidal protein toxin Cry1Ab/Ac.	Mikrochim Acta	186(11)	731	2019		
47686	31617022	Chen L., Deng Y., Zhu H., Hu Y., Jiang Z., Tang S., Wang S., Ding Y.	The Initiation of Inferior Grain Filling is Affected by Sugar Translocation Efficiency in Large Panicle Rice.	Rice (N Y)	12(1)	75	2019		
47687	31659338	Eom J.S., Luo D., Atienza-Grande G., Yang J., Ji C., Thi Luu V., Huguet-Tapia JC., Char S.N., Liu B., Nguyen H., Schmidt S.M., Szurek B., Vera Cruz C., White F.F., Oliva R., Yang B., Frommer W.B.	Diagnostic kit for rice blight resistance.	Nat. Biotechnol.	37(11)	1372-1379	2019		
47688	31597300	Toyomoto D., Uemura M., Taura S., Sato T., Henry R., Ishikawa R., Ichitani K.	Segregation Distortion Observed in the Progeny of Crosses Between <i>Oryza sativa</i> and <i>O</i>. <i>meridionalis</i> Caused by Abortion During Seed Development.	Plants (Basel)	8(10)		2019	SDV1,SDV2	OsSDV1,OsSDV2
47689	31635172	Kong L., Zhang L.	i6mA-DNCP: Computational Identification of DNA <i>N</i>6-Methyladenine Sites in the Rice Genome Using Optimized Dinucleotide-Based Features.	Genes (Basel)	10(10)		2019		
47690	31269202	Fabre D., Yin X., Dingkuhn M., Clement-Vidal A., Roques S., Rouan L., Soutiras A., Luquet D.	Is triose phosphate utilization involved in the feedback inhibition of photosynthesis in rice under conditions of sink limitation?	J. Exp. Bot.	70(20)	5773-5785	2019		
47691	31681441	Yu H., Dai Z.	SNNRice6mA: A Deep Learning Method for Predicting DNA N6-Methyladenine Sites in Rice Genome.	Front Genet	10	1071	2019		
47692	31695897	Horgan F.G., Srinivasan T.S., Crisol-Mart?nez E., Almazan M.L.P., Ramal A.F., Oliva R., Quibod I.L., Bernal C.C.	Microbiome responses during virulence adaptation by a phloem-feeding insect to resistant near-isogenic rice lines.	Ecol Evol	9(20)	11911-11929	2019		
47693	31615413	Vlad D., Abu-Jamous B., Wang P., Langdale J.A.	A modular steroid-inducible gene expression system for use in rice.	BMC Plant Biol.	19(1)	426	2019		
47694	31571430	Sun X., Zhang L., Tang Z., Shi X., Ma J., Cui R.	Transcriptome analysis of roots from resistant and susceptible rice varieties infected with Hirschmanniella?mucronata.	FEBS Open Bio	9(11)	1968-1982	2019		
47695	31585860	Taniguchi M., Aida R., Saito K., Oya R., Ochiai A., Saitoh E., Tanaka T.	Identification of cationic peptides derived from low protein rice by-products and evaluation of their multifunctional activities.	J. Biosci. Bioeng.			2019		
47696	31660870	Sun R., Qin S., Zhang T., Wang Z., Li H., Li Y., Nie Y.	Comparative phosphoproteomic analysis of blast resistant and susceptible rice cultivars in response to salicylic acid.	BMC Plant Biol.	19(1)	454	2019		
47697	31628150	Fan J., Quan W., Li G.B., Hu X.H., Wang Q., Wang H., Li X.P., Luo X., Feng Q., Hu Z.J., Feng H., Pu M., Zhao J.Q., Huang Y.Y., Li Y., Zhang Y., Wang W.M.	circRNAs Are Involved in the Rice-<i>Magnaporthe oryzae</i> Interaction.	Plant Physiol.	182(1)	272-286	2020		
47698	31592330	Shahane A.A., Shivay Y.S., Prasanna R., Kumar D.	Improving Water and Nutrient Use Efficiency in Rice by Changing Crop Establishment Methods, Application of Microbial Inoculations, and Zn Fertilization.	Glob Chall	3(10)	1800005	2019		
47699	31816737	Yang Q., Zhao W., Liu J., He B., Wang Y., Yang T., Zhang G., He M., Lu J., Peng L., Wang Y.	Quantum dots are conventionally applicable for wide-profiling of wall polymer distribution and destruction in diverse cells of rice.	Talanta	208	120452	2020		
47700	31988629	Xu L., Guo L., You H., Zhang O., Xiang X.	Novel haplotype combinations reveal enhanced seedling vigor traits in rice that can accurately predict dry biomass accumulation in seedlings.	Breed. Sci.	69(4)	651-657	2019		
47701	31627094	Du F., Liu P., Wang K., Yang Z., Wang L.	Influence of different arsenic species on uptake, speciation and efflux of arsenic in hydroponic rice plants.	Ecotoxicol. Environ. Saf.	186	109791	2019		
47702	31346594	Harrop T.W.R., Mantegazza O., Luong A.M., B?thune K., Lorieux M., Jouannic S., Adam H.	A set of AP2-like genes is associated with inflorescence branching and architecture in domesticated rice.	J. Exp. Bot.	70(20)	5617-5629	2019		
47703	31427454	Momen M., Campbell M.T., Walia H., Morota G.	Predicting Longitudinal Traits Derived from High-Throughput Phenomics in Contrasting Environments Using Genomic Legendre Polynomials and B-Splines.	G3 (Bethesda)	9(10)	3369-3380	2019		
47704	31610741	Wu S., Tan H., Hao X., Xie Z., Wang X., Li D., Tian L.	Profiling miRNA expression in photo-thermo-sensitive male genic sterility line (PTGMS) PA64S under high and low temperature.	Plant Signal Behav	14(12)	1679015	2019		
47705	30694142	X J Chen, Y Chen, L N Zhang, B Xu, J H Zhang, Z X Chen, Y H Tong, S M Zuo, J Y Xu	Overexpression of OsPGIP1 Enhances Rice Resistance to Sheath Blight.	Plant Dis.	100(2)	388-395	2016	PGIP1	Ospgip1, pgip1, OsPGIP1
47706	0	Chai M. F., Bellizzi M., Wan C. X., Cui Z. F., Li Y. B., Wang G. L.	The NAC transcription factor OsSWN1 regulates secondary cell wall development in Oryza sativa	Journal of Plant Biology	58	44-51	2015	_	ONAC007, ONAC7, OsSND1, SND1, OsSWN1, SWN1, DLN157, OsDLN157
47707	0	Zhang L, Hu Y, Li P, Wang X, Dong H	Silencing of an aquaporin gene diminishes bacterial blight disease in rice	Australasian Plant Pathology	48(11)		2018	PIP1;3,XA13	OsPIP1;3. PIP1.3, PIP1-3, RWC3, RWC-3, OsPIP1-3,xa13, Xa13, Os8N3, Os-8N3, 8N3, OsSWEET11, SWEET11, OsSWEET11/Xa13, Xa13/Os8N3/SWEET11, Os8N3/Xa13, OsSWEET11/Os8N3, OsSWEET11a, SWEET11a
47708	31732821	Feng P., Shi J., Zhang T., Zhong Y., Zhang L., Yu G., Zhang T., Zhu X., Xing Y., Yin W., Sang X., Ling Y., Zhang C., Yang Z., He G., Wang N.	Zebra leaf 15, a receptor-like protein kinase involved in moderate low temperature signaling pathway in rice.	Rice (N Y)	12(1)	83	2019	_,WRKY71,Z15	OsMYB4, Osmyb4, OsMyb4, MYB4, OsMYB55, MYB55, OsMyb8, MYB8, OsMYB13b, MYB13b, OsMYB15, MYB15, Os2R_MYB46, 2R_MYB46,OsWRKY71, WRKY-71,OsRLCK181, RLCK181, OsZ15
47709	31754193	Tang W., Ye J., Yao X., Zhao P., Xuan W., Tian Y., Zhang Y., Xu S., An H., Chen G., YU J., Wu W., Ge Y., Liu X., Li J., Zhang H., Zhao Y., Yang B., Jiang X., Peng C., Zhou C., Terzaghi W., Wang C., Wan J.	Genome-wide associated study identifies NAC42-activated nitrate transporter conferring high nitrogen use efficiency in rice.	Nat Commun	10(1)	5279	2019	NPF6.1,NAC42	OsNPF6.1,OsNAC42, ONAC042, ONAC42, ONAC051, ONAC51, OsNTL4, NTL4
47710	31772077	Uzair M., Xu D., Schreiber L., Shi J., Liang W., Ki-Hong Jung, Chen M., Luo Z., Zhang Y., YU J., Zhang D.	PERSISTENT TAPETAL CELL2 Is Required for Normal Tapetal Programmed Cell Death and pollen Wall Patterning.	Plant Physiol.	182(2)	962-976	2020	CYP704B2,RADC1,EAT1,ABCG15,MS2,CP1,PTC2,PTC1,C6	OsCYP704B2,OsAP25, Radc1, OsRADC1, AP25,OsEAT1, OsbHLH141, EAT1/DTD1, bHLH141, DTD1, DTD, DLN120, OsDLN120,OsABCG15, PDA, PDA1, OsABCG15/PDA1,OsMS2, OsDPW, DPW, DPW1, OsDPW1, OsFAR2, FAR2,OsCP1, Os CP1,OsPTC2, OsAHL4, AHL4,OsMS1, tms9-1, OsPTC1, MS1, TMS9-1, OsTMS9-1,Osc6, Osg6B, OsG6B, OsLTPG25, OsLTPg25, OsLtpVII.1, Os C6
47711	31786672	Kaur V., Shashank K Yadav, Dhammaprakash P Wankhede, Pulivendula P., Kumar A., Chinnusamy V.	Cloning and characterization of a gene encoding MIZ1, a domain of unknown function protein and its role in salt and drought stress in rice.	Protoplasma	257(2)	475-487	2020	MIZ1	OsMIZ1
47712	31806675	Zhuang H., Hong-Lei Wang, Zhang T., Xiao-Qin Zeng, Chen H., Zhong-Wei Wang, Zhang J., Zheng H., Tang J., Ying-Hua Ling, Zheng-Lin Yang, Guang-Hua He, Yun-Feng Li	<i>NONSTOP GLUMES1</i> Encodes a C2H2 Zinc Finger Protein That Regulates Spikelet Development in Rice.	Plant Cell	32(2)	392-413	2020	LHS1,G1,NSG1,DL,MFO1,WD40-66,ASP1,WD40-12	OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO, OsLHS1, OsLG3b, LG3b, qLGY3, LGY3, DLN80, OsDLN80, OLR, OsOLR, GW3p6, OsGW3p6, OsMADS1GW3p6, MADS1GW3p6, qLGY3/OsLG3b/GW3p6,g1 (lng), lng, g1, ELE, Os ELE, OsG1, G1/ELE, LSL2, OsLSL2,OsNSG1,OsDL, dl(lop), lop, dl, dl1, OsDRPq3, DRPq3,OsMADS6, MADS6, OsMFO1,OsWD40-66, TPR3, OsTPR3, TPR1, OsTRP1, OsTPR3, OsTPL2, TPL2, OsTPL, TPL,OsLIS-L1, OsWD40-155, ASP1, TPR2, OsTPR2, OsREL2, REL2, OsTPL3, TPL3, OsTPL2, TPL2, ASP-LSL,OsWD40-12, TPR1, OsTPR1
47713	31811256	Henry Akrofi Doku, Shu-Xian Gan, Zhu Q., Nadir S., Li W., Meng-Ting Li, Zhou L., Cheng-Yun Li, Sang-Gu Kang, Eui-Ho Park, Li-Juan Chen, Dong-Sun Lee	The expression pattern of OsDim1 in rice and its proposed function.	Sci Rep	9(1)	18492	2019	DIM1	OsDim1
47714	31826965	Wang J., Qin H., Zhou S., Wei P., Zhang H., Zhou Y., Miao Y., Huang R.	The Ubiquitin-Binding Protein OsDSK2a Mediates Seedling Growth and Salt Responses by Regulating Gibberellin Metabolism in Rice.	Plant Cell	32(2)	414-428	2020	EUI1,DSK2B,DSK2A	eui1, GA16,17ox, CYP714D1, EUI, CYP714D1/EUI, OsEUI, LG5, OsLG5,OsDSK2b,OsDSK2a
47715	31830332	Huang Y., Bai X., Cheng N., Xiao J., Li X., Xing Y.	Wide Grain 7 increases grain width by enhancing H3K4me3 enrichment in the OsMADS1 promoter in rice (Oryza sativa L.).	Plant J.			2019	WG7	OsCW-ZF7, CW-ZF7, CWZF7, OsWG7, AKIP695, OsAKIP695
47716	31833176	Peng X., Wang M., Li Y., Yan W., Chang Z., Chen Z., Xu C., Yang C., Xing Wang Deng, Wu J., Tang X.	Lectin receptor kinase OsLecRK-S.7 is required for pollen development and male fertility.	J Integr Plant Biol			2019	CYP704B2,PKS10,AP1,ABCG26,ABCG15,CYP703A3,C6,ACS9,MS2,LAP6,DPW2,GCD1	OsCYP704B2,OsPKS10, OsPKS2, PKS2, OsCHS10, CHS10,LECRK-S.7, OsLecRK-S.7, OsDAF1, DAF1, OsLecRK5, LecRK5, OsAP1,OsABCG26,OsABCG15, PDA, PDA1, OsABCG15/PDA1,OsCYP703A3,Osc6, Osg6B, OsG6B, OsLTPG25, OsLTPg25, OsLtpVII.1, Os C6,OsACS9, 4CL4, OsACOS12, ACOS12 ,OsMS2, OsDPW, DPW, DPW1, OsDPW1, OsFAR2, FAR2,OsPKS1, PKS1, YY2, OsPKS21, PKS21, OsLAP6/OsPKS1, OsLAP6, OsCHS22, CHS22,OsDPW2,OsGCD1
47717	31848048	Ming-Wei Wu, Zhao H., Jin-Dan Zhang, Guo L., Chun-Ming Liu	radicleless 1 (rl1)-mediated nad4 intron 1 splicing is crucial for embryo and endosperm development in rice (Oryza sativa L.).	Biochem. Biophys. Res. Commun.	523(1)	220-225	2020	RL1	OsRL1, OsEMP8, EMP8
47718	31853664	Liu Q., Ting-Ting Chen, Dong-Wang Xiao, Shu-Man Zhao, Ji-Shan Lin, Wang T., Yan-Jie Li, Bing-Kai Hou	OsIAGT1 Is a Glucosyltransferase Gene Involved in the Glucose Conjugation of Auxins in Rice.	Rice (N Y)	12(1)	92	2019	IAA14,YUCCA2,YUCCA1,IAGLU,GH3-2,COW1,YUCCA11,ARF8	OsIAA14, AUX/IAA14, OsAUX/IAA14 ,OsYUCCA2, OsYUC2, YUC2,OsYUCCA1, OsYUC1, YUC1,OsIAGLU, OsIAAGLU, IAAGLU, OsIAGT1, IAGT1, UGT74A2, OsUGT74A2,OsGH3-2, OsGH3.2, GH3.2,OsCOW1, oscow1, OsYUC8, YUC8, NAL7, OsNAL7, OsYUCCA8, YUCCA8, FMO, OsFMO(t), REIN7, YUC8/REIN7,OsYUCCA11, OsYUC11, YUC11,OsARF8, OsARF12, ARF12
47719	31879959	Chen J., Xin-Yuan Huang, David E Salt, Fang-Jie Zhao	Mutation in OsCADT1 enhances cadmium tolerance and enriches selenium in rice grain.	New Phytol.	226(3)	838-850	2020	SULTR1;1,CADT1,SDI1	OsSultr1;1, OsSul1;1, Sul1;1, OsSultr1;1(a), OsSultr1;1(b),OsSHM4, SHM4, OsSHMT4, SHMT4, OsSHTM1, SHTM1, OsCADT1, FLO20, OsFLO20,OsSDI1
47720	31882455	Guo T., Hua-Chang Chen, Zi-Qi Lu, Diao M., Chen K., Nai-Qian Dong, Jun-Xiang Shan, Wang-Wei Ye, Huang S., Hong-Xuan Lin	A SAC Phosphoinositide Phosphatase Controls Rice Development via Hydrolyzing PI4P and PI(4,5)P2.	Plant Physiol.	182(3)	1346-1358	2020	GH1	OsGH1
47721	31889223	Xue M., Liu L., Yu Y., Zhu J., Gao H., Wang Y., Wan J.	Lose-of-Function of a Rice Nucleolus-Localized Pentatricopeptide Repeat Protein Is Responsible for the floury endosperm14 Mutant Phenotypes.	Rice (N Y)	12(1)	100	2019	_,ISA2,AGPS2,RPS2,_,ALK,PHO1,PHS8,FLO14,SBE3	ccmFn, ccmFn-1,OsISA2, ISA II, OsISA II,OsAGPS2a, AGPS2A, AGPS2B, OsAGPS2, osagps2, APS2, APS2a, APS2b, AGPS2a, APGS2b, OsAGPS2b, AGPP, GAS8, OsAPS2, OsAPS2a, OsAPS2b,rps2, orf483 ,cob, cob-1, cob-like, cyt c,alk, SSII-3, OsSSIIa, OsSSII-3, SSIIa, SSS2A, OsSSIIaChr6, SS2a,Pho1, OsPho1, OsPHOL, PHOL, OsPHOI, PHOI,ISA1, OsISA1, ISA, OsISA, PHS8/ISA1, OsPHS8, ISA I, OsISA I, ISAI, OsISAI,OsFLO14, OsNPPR3, NPPR3,SBEIII*, SBEIII, Sbe3, RBE3, QEIIa, QEIIA, BEIIb, BEIIB, SBEIIb, OsBEIIb, sbe3, SBE III, OsSBEIIb, SBEIIb
47722	31889302	Li-Fen Huang, Yu-Kuo Liu, Sung-Chieh Su, Chih-Chang Lai, Ching-Rong Wu, Tai-Jang Chao, Yung-Hsing Yang	Genetic engineering of transitory starch accumulation by knockdown of OsSEX4 in rice plants for enhanced bioethanol production.	Biotechnol. Bioeng.	117(4)	933-944	2020	SEX4	OsPP42, PP42, OsSEX4
47723	31905964	Na-Hyun Shin, Do Thi Trang, Woo-Jong Hong, Kang K., Chuluuntsetseg J., Joon-Kwan Moon, Yo-Han Yoo, Ki-Hong Jung, Soo-Cheul Yoo	Rice Senescence-Induced Receptor-Like Kinase (<i>OsSRLK</i>) Is Involved in Phytohormone-Mediated Chlorophyll Degradation.	Int J Mol Sci	21(1)		2019	OSBZ8,RLCK176,SRLK,LOX1,WRKY72,SAPK6,LOX2,ETR2,ABI1,HD5,HFP,ETR3,PIN1B,NAC106,SH11,ST1	OsBZ8, OsbZIP05, OsGBF1, GBF1, OsGBF1a, OsGBF1b,OsRLCK176,OsSRLK,OsLOX1, OsLOX5,OsWRKY72, WRKY-72,OsSAPK6, OSRK1, OsSnRK2.6, SnRK2.6,OsLOX2, OsLOX6, LOX6,etr2, OsPK1, PK1, ERL1, OsETR2, OsERL1, OS-ETR2, OsERS3,OsPP2C51, PP2C51, OsPP79, PP79, OsABI1,Hd5(t)*, Hd5, qHD5, HAP3H, OsHAP3H, NF-YB, CBF-A, DTH8 , qHD5(t)*, Ghd8, Ghd8/DTH8, Lhd1, NF-YB11, OsNF-YB11, NFYB11, LH8, DTH8/Ghd8, RH8, DTH8/Ghd8/LHD1, CAR8, DTH8/Ghd8/ OsHAP3H, EF8, OsEF8,OsHFP,OsETR3, OsERS4, OS-ETR3, OsETR3a, OsETR3b, PK2, OsPK2, OsETR2;1, ETR2;1,PIN1A, OsPIN1A, OsPIN1a, REH1, OsPIN1, OsPIN1b, REH1/OsPIN1,ONAC106,OsJAmyb, JAmyb, OsJAMyb, OsMYB21, MYB21, Os2R_MYB91, 2R_MYB91, OgSH11, OsSH11,st1(ws1), ws1, st1, OsST1, RNRS1, OsRNRS1, rnrs1, RNRS, SDL/RNRS1, SDL, OsSDL, NSL2, OsNSL2
47724	31906256	Zhao B., Tang Y., Zhang B., WU P., Li M., Xu X., Wu G., Jiang H., Chen Y.	The Temperature-Dependent Retention of Introns in <i>GPI8</i> Transcripts Contributes to a Drooping and Fragile Shoot Phenotype in Rice.	Int J Mol Sci	21(1)		2019	DF	GPI8, OsGPI8
47725	31910821	Wang X., Bin-Bin Li, Tian-Tian Ma, Liang-Yu Sun, Tai L., Chun-Hong Hu, Wen-Ting Liu, Wen-Qiang Li, Kun-Ming Chen	The NAD kinase osnadk1 affects the intracellular redox balance and enhances the tolerance of rice to drought.	BMC Plant Biol.	20(1)	11	2020	DREB1B,CML16,SAUR2,ONAC2,WRKY70,WRKY42,CCD1,RSUS1,NADK1,2R_MYB6 ,WRKY21	OsDREB1B, ERF31, OsERF031, OsERF#031, OsERF31, AP2/EREBP#169, AP2/EREBP169, OsDREB1b, OsDREB1C, OsCBF1, CBF1,OsCML16,OsSAUR2,SNAC1, snac1, OsNAC9, ONAC002, ONAC2, ONAC033, ONAC33, ONAC043, ONAC43, ONAC044, ONAC44, OsNAC19, NAC19, SNAC1/ONAC002, OsSNAC1, OsNAC9, OsNAC1,OsWRKY70,OsWRKY42, WRKY-42,OsCCD1,sus1, RSus1(t), SUS1, SS2, OsScS2, RSs2, RSus1, SuSy1, OsSUS1, RSS2, RSus2, OsRSUS1,OsNADK1,OsMYB, Os2R_MYB6 ,OsWRKY21
47726	31912314	Guo Y., Wu Q., Xie Z., Yu B., Zeng R., Min Q., Huang J.	OsFPFL4 is Involved in the Root and Flower Development by Affecting Auxin Levels and ROS Accumulation in Rice (Oryza sativa).	Rice (N Y)	13(1)	2	2020	RAA1,FPFL5,FPFL2,FPFL3,FPFL4	OsRAA1, OsFPFL1, FPFL1,OsFPFL5, ACL1, OsACL1,OsFPFL2,OsFPFL3,OsFPFL4
47727	31919641	Mohammad Hasanuzzaman Rani, Liu Q., Yu N., Zhang Y., Wang B., Cao Y., Zhang Y., Md Anowerul Islam, Workie Anley Zegeye, Cao L., Cheng S.	es5 is involved in the regulation of phosphatidylserine synthesis and impacts on early senescence in rice (Oryza sativa L.).	Plant Mol. Biol.	102(4-5)	501-515	2020	YGL98,SGR,RCCR1,AMTR1,KAT1,ICL,SUI3,SUI2,SUI1	OsChlD, ChlD, CHLD, OsCHLD, Ygl7, YGL3, OsvWA12, vWA12,sgr(t), sgr, OsSGR, OsSgr, SGR1, OsSGR1,OsRCCR1, OsRCCR, RCCR,Osh36, OsH36, H36, OsAMTR1,OsI57, I57, OsKAT1, OsACAA1, ACAA1,OsEnS-107, EnS-107, OsI85, I85, OsICL, Osl85, l43, Osl43, OsL85,OsSUI3,OsSUI2, ES5, OsES5,OsSUI1, OsPSS-1, PSS-1, OsPSS1, PSS1
47728	31922260	Xu Y., Wang R., Wang Y., Zhang L., Yao S.	A point mutation in ltt1 enhances cold tolerance at the booting stage in rice.	Plant Cell Environ.	43(4)	992-1007	2020	RBOHC,RBOHD,NOE1,RBOHA,GPX3,LTT1,RBOHE,AGO2,HXK1,APX7,PHGPX,CATB,APX1,GPX1,MS188,SODB,UDT1,SODA1,AOX1A,SODCC2,AOX1B,APX3,RBOHG,RBOHB	rbohC, OsrbohC, Os rbohC, OsRbohC, OsNox5, Nox5, OsrbohD, OsRboh5, RBOHA, OsRboh5, Rboh5,rbohD, OsrbohD, Os rbohD, OsRbohD, OsNox4, OsRboh4, Rboh4,CATC, OsCat, OsCatC, OsCATC, OsNOE1, noe1, catC, OsCATC, CAT3, OsCAT3, LLM9428, OsLLM9428,rbohA, OsrbohA, Os rbohA, OsRbohA, OsNox2, Nox2, OsRboh2, Rboh2,OsGpx3, GPX3, OsGPx03,OsLTT1,rbohE, OsrbohE, Os rbohE, OsRbohE, OsNox3, Nox3, OsRboh3, Rboh3,OsAGO2,OsHXK1,OsAPx7, OsAPx07, OSAPX7, APx7, sAPX,OsGpx2, GPX2, OsGPx02, PHGPX, ricPHGPX, riPHGPX ,CatB, CAT-B, OsCatB, OsCATB, OsCAT1B, CAT1B, CAT2, OsCAT2,OsAPX1, APXa, OsAPXa, OsAPx01, OsAPx1, OSAPX1, APx1, cAPX, APX2, cAPXa, OscAPXa,OsGpx1, GPX1, OsGPx01, OsGPX1,OsMYB80, MYB80, OsMS188, Os2R_MYB44, 2R_MYB44, OsMYB103/OsMYB80/OsMS188/BM1, OsMYB103, MYB103,SodB, Fe-SOD, Fe- SOD, OsFe-SOD, Fe+-SOD, OsFe+-SOD, OsFe-SODa, OsFe-SODb, OsFeSODb, FeSODb, OsFSD1.2, FSD1.2, FeSOD2, OsFSD2, FSD2, OsFSD1, FSD1, ALM1, OsALM1,Udt1, bHLH164, OsUDT1, OsbHLH164 ,SodA1, OsSODA1, Mn-SOD, Mn- SOD, OsMSD, MnSOD, OsMnSOD, MnSOD1, OsMnSOD1,Ao1-1, AOX1a, OsAOX1a, AOX 1a,Cu/Zn-SOD, Cu/Zn- SOD, OsCu-ZnSOD2, Cu-ZnSOD2, OsSODB, OsSOD3, SodCc2, Os SodCc2, sodB, OsSodB, RSODB, OssodCc1, OsCSD1.1, CSD1.1, OsCDS1, OsSOD3-CU/Zn, SOD3-CU/Zn, CuZnSOD2, Cu/ZnSOD2, OsCu/ZnSOD2, OsCSD1, CSD1, CuZnSOD1, OsCuZnSOD2, OsCSD4, CSD4, OsCSD3, CSD3, Cu/Zn-SOD3,AOX1b, OsAOX1b,OsAPx3, OsAPx03, OSAPX3, APx3, mAPX,rbohG, OsrbohG, Os rbohG, OsRbohG, OsNox7, Nox7, OsrbohB, OsRBOHB, RBOHB, OsRboh7, Rboh7,rbohB, OsrbohB, Os rbohB, OsRbohB, OsNox1, Nox1, Os-RbohB, RbohB, OsRboh1, Rboh1
47729	31923320	Qiao L., Zheng L., Sheng C., Zhao H., Jin H., Niu D.	Rice siR109944 suppresses plant immunity to sheath blight and impacts multiple agronomic traits by affecting auxin homeostasis.	Plant J.			2020	_,SIR109944 	Os_F0720, FBL55, OsFBL55, OsAFB3, AFB3,  OsFBL55, FBL55,siR109944 
47730	31925781	Nonawin Lucob-Agustin, Kawai T., Misuzu Takahashi-Nosaka, Mana Kano-Nakata, Cornelius M Wainaina, Hasegawa T., Mayuko Inari-Ikeda, Sato M., Tsuji H., Yamauchi A., Inukai Y.	weg1, which encodes a cell wall hydroxyproline-rich glycoprotein, is essential for parental root elongation controlling lateral root formation in rice.	Physiol Plant			2020	WEG1	OsWEG1
47731	31925835	Hyun J Park, Young N You, Lee A., Jung H., Seung H Jo, Oh N., Hyun-Soon Kim, Hyo-Jun Lee, Ju-Kon Kim, Youn S Kim, Jung C., Hye S Cho	OsFKBP20-1b interacts with the splicing factor OsSR45 and participates in the environmental stress response at the post-transcriptional level in rice.	Plant J.			2020	SR45,FKBP20-1B	OsSR45,OsFKBP20-1b
47732	31928685	Xue Song Liu, Sheng Jun Feng, Meng Qi Wang, Ya Ning Zhao, Hong Wei Cao, Justice Kipkoir Rono, Zhi Min Yang	OsNHAD is a chloroplast membrane-located transporter required for resistance to salt stress in rice (Oryza sativa).	Plant Sci.	291	110359	2020	NHAD	OsNHAD
47733	31949008	Ren Y., Wang Y., Pan T., Wang Y., Wang Y., Gan L., Wei Z., Wang F., Wu M., Jing R., Wang J., Wan G., Bao X., Zhang B., Zhang P., Zhang Y., Ji Y., Lei C., Zhang X., Cheng Z., Lin Q., Zhu S., Zhao Z., Wang J., Wu C., Qiu L., Wang H., Wan J.	<i>GPA5</i> Encodes a Rab5a Effector Required for Post-Golgi Trafficking of Rice Storage Proteins.	Plant Cell	32(3)	758-777	2020	GLUP4,GLUP6,GPA5	glup4(esp8), esp8, glup4, OsRab5B2, Rab5a, OsRab5a, GPA1/Rab5a, GPA, GLUP4/Rab5, GLUP4/Rab5a, GPA1, OsGPA1,glup6(t), Glup6(t), Glup6, OsVPS9A, VPS9a, GPA2/VPS9a, GPA2, GLUP6/GEF,OsGPA5
47734	31974553	Shi Y., Phan H., Liu Y., Cao S., Zhang Z., Chu C., Michael R Schl?ppi	The Glycosyltransferase Gene OsUGT90A1 Helps Protect Plasma Membranes During Chilling Stress in Rice.	J. Exp. Bot.			2020	UGT90A1	OsUGT90A1
47735	31990125	Ren Y., Tian X., Li S., Mei E., He M., Tang J., Xu M., Li X., Wang Z., Li C., Bu Q.	Oryza sativa mediator subunit OsMED25 interacts with OsBZR1 to regulate brassinosteroid signaling and plant architecture in rice.	J Integr Plant Biol			2020	BZR1,PFT1	OsBZR1, Os BZR1, OsBES1-6, BES1-6,OsPFT1, OsMED25_1, MED25_1, OsMED25, MED25, OsvWA27, vWA27
47736	32026326	Wang K., Meng-Qi Li, Yan-Peng Chang, Zhang B., Quan-Zhi Zhao, Wen-Li Zhao	The basic helix-loop-helix transcription factor OsBLR1 regulates leaf angle in rice via brassinosteroid signalling.	Plant Mol. Biol.	102(6)	589-602	2020	RLI1,BLR1,RACK1	OsRLI1, RLI1/HINGE1, HINGE1, OsHINGE1,OsbHLH079, OsbHLH79, bHLH079, bHLH79, OsBLR1, OsBCL2, BCL2,RACK1A, RWD, OsWD40-21, OsRACK1, OsRACK1A
47737	32028088	Cao Y., Jain A., Ai H., Liu X., Wang X., Hu Z., Sun Y., Hu S., Shen X., Lan X., Xu G., Sun S.	OsPDR2 mediates the regulation on the development response and maintenance of Pi homeostasis in rice.	Plant Physiol. Biochem.	149	1-10	2020	PDR2	OsPDR2
47738	32029522	Zhao J., Long T., Wang Y., Tong X., Tang J., Li J., Wang H., Tang L., Li Z., Shu Y., Liu X., Li S., Liu H., Li J., Wu Y., Zhang J.	<i>RMS2</i> Encoding a GDSL Lipase Mediates Lipid Homeostasis in Anthers to Determine Rice Male Fertility.	Plant Physiol.	182(4)	2047-2064	2020	RMS2,UDT1,PTC1	OsGELP34, GELP34, OsRMS2,Udt1, bHLH164, OsUDT1, OsbHLH164 ,OsMS1, tms9-1, OsPTC1, MS1, TMS9-1, OsTMS9-1
47739	32034845	Shuen-Fang Lo, Ming-Lung Cheng, Yue-Ie Caroline Hsing, Yi-Shih Chen, Kuo-Wei Lee, Ya-Fang Hong, Hsiao Y., An-Shan Hsiao, Pei-Jing Chen, Lai-In Wong, Nan-Chen Chen, Reuzeau C., Tuan-Hua David Ho, Su-May Yu	Rice Big Grain 1 promotes cell division to enhance organ development, stress tolerance and grain yield.	Plant Biotechnol. J.			2020	PIN5B,_,RBG1-L,RBG1	PIN5C, OsPIN5c, OsPIN5b, PIN4,Os_F0767, OsTIR1, TIR1, OsAFB4, AFB4 ,  OsFBL71, FBL71,OsRBG1-L,OsRBG1, MAPKKK67, OsMAPKKK67
47740	32038690	Su-Hyeon Shim, Sang-Kyu Lee, Dae-Woo Lee, Brilhaus D., Wu G., Ko S., Choon-Hwan Lee, Andreas P M Weber, Jong-Seong Jeon	Loss of Function of Rice Plastidic Glycolate/Glycerate Translocator 1 Impairs Photorespiration and Plant Growth.	Front Plant Sci	10	1726	2019	PLGG1,PLGG2	OsPLGG1, OsPLGG1a, PLGG1a,OsPLGG2, OsPLGG1b, PLGG1b
47741	32064495	Zhang R., Hu H., Wang Y., Hu Z., Ren S., Li J., He B., Wang Y., Xia T., Chen P., Xie G., Peng L.	A novel rice fragile culm 24 mutant encodes a UDP-glucose epimerase that affects cell wall property and photosynthesis.	J. Exp. Bot.			2020	BC7,RSUS6,RSUS4,CESA8,CESA6,RSUS2,UGE1,FC24,PHD1,UGE4,CESA3,RSUS1,RSUS3,CESA5,BC6,CESA7,CESA1,UGE3	OsCesA4, OsCESA4, CESA4, OS_CESA04, BC11, bc7t, Bc7(t), bc-7, OsCesA 4, CesA4, FC17/CESA4, FC17, OsFC17,SUS6, SS6, OsScS6, RSs6, RSus6, OsSUS6,SUS4, SS4, OsScS4, RSs4, RSus4, OsSUS4,OsCesA8, OsCESA8, OS_CESA08, CesA8,OsCesA6, OsCESA6, OS_CESA06,sus2, RSus2(t), SUS2, SS1, OsScS1, RSs1, RSus2, OsSUS2, RSS1, RSus1, OsSusy2, Susy2, OsRSUS1, RSUS1,OsUGE1, OsUGE-1, UGE-1,OsUGE2, UGE2, OsFC24, BZ1, OsBZ1, OsBP1, BP1,OsPHD1,  LM212-1,OsUGE4, OsUGE3,OsCesA3, OsCESA3, OS_CESA03,sus1, RSus1(t), SUS1, SS2, OsScS2, RSs2, RSus1, SuSy1, OsSUS1, RSS2, RSus2, OsRSUS1,RSus3(t), SUS3, SS3, OsScS3, RSs3, RSus3, OsSUS3, RSS3, OsEnS-111, Susy3, OsSusy3,OsCesA5, OsCESA5, OS_CESA05,Bc6*, Bc6, OsCesA9, CESA9, OsCESA9, OS_CESA09, OsCesA 9, CesA9, BC88, SDBC1, OsSDBC1,OsCesA7, OsCESA7, OS_CESA07, OsCesA 7, CesA7,OsCesA1, OsCesA-1, OsCESA1, OS_CESA01, CesA1,OsUGE3, OsUGE4
47742	32068333	Zhang H., Wang M., Li Y., Yan W., Chang Z., Ni H., Chen Z., Wu J., Xu C., Xing Wang Deng, Tang X.	GDSL esterase/lipases OsGELP34 and OsGELP110/OsGELP115 are essential for rice pollen development.	J Integr Plant Biol			2020	RMS2	OsGELP34, GELP34, OsRMS2
47743	32071150	Song M., Fan X., Chen J., Qu H., Luo L., Xu G.	OsNAR2.1 interaction with OsNIT1 and OsNIT2 functions in root-growth responses to nitrate and ammonium.	Plant Physiol.			2020	_,LRA1,GH3-2,GH3-8,PIN1C,NAR2.1,PIN1D,NIT1,TLD1	OsNIT1, NIT1, OsNIT2, NIT2, OsNIT4B, NIT4B,OsPIN2, PIN2, OsLRA1, WAR1, OsWAR1,OsGH3-2, OsGH3.2, GH3.2,OsGH3-8, OsMGH3, OsGH3.8, GH3.8, OsGH3-2,PIN1B, OsPIN1B, OsPIN1b, OsPIN1c,OsNAR2.1, OsNRT3.1A,OsPIN1D, OsPIN1d,OsNIT1, OsNIT2, NIT2, OsNIT4A, NIT4A,OsGH3-13, GH3-13, TLD1/OsGH3.13, TLD1, OsGH3.13, TLD2
47744	31753974	Stokstad E.	After 20 years, golden rice nears approval.	Science	366(6468)	934	2019		
47745	31712424	Shivhare D., Ng J., Tsai Y.C., Mueller-Cajar O.	Probing the rice Rubisco-Rubisco activase interaction via subunit heterooligomerization.	Proc. Natl. Acad. Sci. U.S.A.	116(48)	24041-24048	2019	RCA	OsRcaII, rca, rcaII, OsRcaI, RCAI, ME137, OsRCA1, RCA, RCAalpha, OsRCAalpha, OsRCAbeta
47746	31712418		Correction for Chen et al., Sugar starvation-regulated MYBS2 and 14-3-3 protein interactions enhance plant growth, stress tolerance, and grain weight in rice.	Proc. Natl. Acad. Sci. U.S.A.	116(47)	23861	2019		
47747	31754037	Davis K.F., Chhatre A., Rao N.D., Singh D., Ghosh-Jerath S., Mridul A., Poblete-Cazenave M., Pradhan N., DeFries R.	Assessing the sustainability of post-Green Revolution cereals in India.	Proc. Natl. Acad. Sci. U.S.A.	116(50)	25034-25041	2019		
47748	31757927	Paul K., Saha C., Nag M., Mandal D., Naiya H., Sen D., Mitra S., Kumar M., Bose D., Mukherjee G., Naskar N., Lahiri S., Das Ghosh U., Tripathi S., Sarkar M.P., Banerjee M., Kleinert A., Valentine A.J., Tripathy S., Sinharoy S., Seal A.	A Tripartite Interaction among the Basidiomycete <i>Rhodotorula mucilaginosa</i>, N2-Fixing Endobacteria, and Rice Improves Plant Nitrogen Nutrition.	Plant Cell	32(2)	486-507	2020	HTNE,NLP3,NLP2,AMT1;1,NLP4,NLP5,NRT1,GLN1;1,_	NRT2.3, OsNRT2.3, OsNRT2;1, OsNRT2.3a, OsNRT2.3b, OsNRT2;3a, OsNRT2.5 ,OsNLP3,OsNLP2,OsAMT1;1, OsAMT1:1, OsAMT1, AMT1-1, AMT1, OsAMT1p, OsAMT1-1, Osamt1-1, "OsAMT1,1", OsAMT1.1, AMT1.1, FCO12,OsNLP4, NLP4.1, NLP4.2,OsNLP5, NLP5.1, NLP5.2, NLP5.3, NLP5.4, NLP5.5,OsNRT1, OsNRT1;1, OsNRT1.1, OsNRT1.1a, OsNRT1.1b, NRT1.1, NRT1.1a, NRT1.1b, OsNPF8.9, NPF8.9 , OsNRT1.1B,OsGLN1;1, GS1, RGS28, OsGS1;1, GS1;1, OsGS, GS1, OsGS1, GLN1-1, OsGS1-1, GS1-1, GS1.1, OsGS1.1,PTR
47749	31753844	Lu C.A., Huang C.K., Huang W.S., Huang T.S., Liu H.Y., Chen Y.F.	DEAD-box RNA helicase 42 Plays a Critical Role in Pre-mRNA Splicing under Cold Stress.	Plant Physiol.	182(1)	255-271	2020	PRP5,NIN6,HADL,SKGAMMA,PRR95,_,DCA1,TRFL2,MDR7,FBOX72,PUB28	OsPRP5, OsRH42, RH42,OsNIN6, INV6, OsINV6,OsHADL, OsHAD3, HAD3,OsSKgamma, SKgamma, OsSK11/ OsGSK2, OsSK11, OsGSK2, SK11, GSK2, OsSK12, SK12,OsPRR95, Os-PRR95, Prr2, OsPRR2, OsCCT33,OsSKgamma, SKgamma, OsSK11/ OsGSK2, OsSK11, OsGSK2, SK11, GSK2, OsSK12, SK12,OsDCA1, DST1, OsDST1,  OsRING161, RING161,OsTRFL2,MDR4, OsABCB5, ABCB5, OsPGP5, OsMDR7, OsISC28, MRP4, OsMRP4, OsABCB11, ABCB11, MR7, OsMR7,OsFbox072, OsFbox72, Fbox72, Os_F0508, OsEBF2, EBF2,  OsFBL7, FBL7,OsPUB28, OsPUB45, PUB45,  OsPUB28, PUB28
47750	31754895	Lee S.B., Kim G.J., Kim K.W., Chu S.H., Shin J.D., Lee Y.J., Park Y.J., Park S.W.	Functional Haplotype and eQTL Analyses of Genes Affecting Cadmium Content in Cultivated Rice.	Rice (N Y)	12(1)	84	2019	LCD,_,MTP1	OsLCD,,OsMTP1
47751	31674679	Zhang H., Li Y., Pu M., Xu P., Liang G., Yu D.	Oryza sativa POSITIVE REGULATOR OF IRON DEFICIENCY RESPONSE 2 (OsPRI2) and OsPRI3 are involved in the maintenance of Fe homeostasis.	Plant Cell Environ.	43(1)	261-274	2020	BHLH57,IRO2,BHLH63,YSL2,HRZ1,BHLH59,BHLH58	OsbHLH057, bHLH057, OsbHLH57, bHLH57, OsPRI4, PRI4,OsIRO2, OsbHLH056, bHLH056, bHLH56, OsbHLH56,OsIRO3, IRO3, OsbHLH063, bHLH063, bHLH63,OsYSL2, Os-YSL2, OsYs6 ,OsHRZ1,  OsRING149, RING149,OsbHLH059, bHLH059, OsbHLH59, bHLH59, OsPRI3, PRI3,OsbHLH058, bHLH058, bHLH58, OsPRI2, PRI2
47752	31697744	Yang J., Deng X., Wang X., Wang J., Du S., Li Y.	The calcium sensor OsCBL1 modulates nitrate signaling to regulate seedling growth in rice.	PLoS ONE	14(11)	e0224962	2019	CBL1,NRT2.2,NRT2.1	OsCBL1, Os-CBL1,OsNRT2.2, OsNRT2.1,OsNRT2.1, OsNRT2.2
47753	31713832	Endo A., Saika H., Takemura M., Misawa N., Toki S.	A novel approach to carotenoid accumulation in rice callus by mimicking the cauliflower Orange mutation via genome editing.	Rice (N Y)	12(1)	81	2019	OR	Osor
47754	31706239	Cheng Y.W., Kong X.W., Wang N., Wang T.T., Chen J., Shi Z.Q.	Thymol confers tolerance to salt stress by activating anti-oxidative defense and modulating Na+ homeostasis in rice root.	Ecotoxicol. Environ. Saf.	188	109894	2020		
47755	31712918	Zhang F., Zeng D., Huang L., Shi Y., Chen T., Zhang F., Zhou Y.	Stress-Activated Protein Kinase OsSAPK9 Regulates Tolerance to Salt Stress and Resistance to Bacterial Blight in Rice.	Rice (N Y)	12(1)	80	2019	_,XTH10,SGT1,SAPK9,CSLF8,_,_,_,_,FYVE6,BC6,_,_,FYVE19,_,_,XTH2,CESA7,XTH19	,OsXTH10,OsSgt1, OsSGT1, Os SGT1,OsSAPK9, OsSnRK2.9, SnRK2.9,OsCslF8, OsCSLF8,,,,,OsFYVE06, FYVE06, OsFYVE6,Bc6*, Bc6, OsCesA9, CESA9, OsCESA9, OS_CESA09, OsCesA 9, CesA9, BC88, SDBC1, OsSDBC1,,,OsFYVE19,OSMYOXIB, OsMyoXIB,,OsXTH2, XTR1, OsXTR1,OsCesA7, OsCESA7, OS_CESA07, OsCesA 7, CesA7,OsXTH19
47756	31697021	Xu L., Wang F., Li R., Deng M., Fu M., Teng H., Yi K.	OsCYCP4s coordinate phosphate starvation signaling with cell cycle progression in rice.	J Integr Plant Biol			2019		
47757	31795318	Park S.C., Kim I.R., Kim J.Y., Lee Y., Yoo S.H., Jung J.H., Cheong G.W., Lee S.Y., Jang M.K., Lee J.R.	Functional Characterization of a Rice Thioredoxin Protein OsTrxm and Its Cysteine Mutant Variant with Antifungal Activity.	Antioxidants (Basel)	8(12)		2019	TRX29	OsTRX m5, Ostrxm5, OsTRXM5, TRXM5, OsTrxm, OsTrx29, Trx29
47758	31737000	Liu J., Shabala S., Shabala L., Zhou M., Meinke H., Venkataraman G., Chen Z., Zeng F., Zhao Q.	Tissue-Specific Regulation of Na+ and K+ Transporters Explains Genotypic Differences in Salinity Stress Tolerance in Rice.	Front Plant Sci	10	1361	2019	AKT1,GORK ,SOS2,AHA1,LMPA,SOS1	OsAKT1, Os-AKT1,OsGORK, OsK5.2, K5.2, KOR1, OsKOR1, OsSKOR, SKOR,CIPK24, OsCIPK24, OsSOS2, OsSnRK3.22, SnRK3.22,OSA1, OsA1, osAHA1, AHA1,OSA7, OsA7, osAHA7, AHA7, PAA-Hwa, OsLMPA,OsSOS1, OsNHA1, NHA1, SOS1/NHX7, NHX7, OsNHX7
47759	31721354	Xie H., Han Y., Li X., Dai W., Song X., Olsen K.M., Qiang S.	Climate-dependent variation in cold tolerance of weedy rice and rice mediated by OsICE1 promoter methylation.	Mol. Ecol.	29(1)	121-137	2020		
47760	31767151	Xie Y., Yu X., Jiang S., Xiao K., Wang Y., Li L., Wang F., He W., Cai Q., Xie H., Zhang J.	OsGL6, a conserved AP2 domain protein, promotes leaf trichome initiation in rice.	Biochem. Biophys. Res. Commun.	522(2)	448-455	2020		
47761	32005373	Jin J., Duan J., Shan C., Mei Z., Chen H., Feng H., Zhu J., Cai W.	Ethylene insensitive3-like2 (OsEIL2) confers stress sensitivity by regulating OsBURP16, the beta subunit of polygalacturonase (PG1beta-like) subfamily gene in rice.	Plant Sci.	292	110353	2020		
47762	31728660	Liu J., Sun X., Liao W., Zhang J., Liang J., Xu W.	Involvement of OsGF14b Adaptation in the Drought Resistance of Rice Plants.	Rice (N Y)	12(1)	82	2019	NCED3,GF14B,P5CS,BZIP23,LEA3-1,RAB16C	OSNCED3, OsNCED-3, OsNCED3, OsNCED3a, NCED3a, OsNCED4, NCED4, OsNECD2, OsNCED2b, NCED2b ,GF14b, OsGF14b, 14-3-3b,OsP5CS, P5CS1, OsP5CS1, OsALDH18B1, ALDH18B1, OsP5CS-1, P5CS-1,OsbZIP23, OsAREB1, OsABF2, Osbzip23, OsAREB2, OsZIP23, ZIP23,OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3, OsLEA3A, LEA3A,rab21, OsLEA27, rab16C, OsRAB16C, DHD
47763	31737015	Wu H., Shi S., Lu X., Li T., Wang J., Liu T., Zhang Q., Sun W., Li C., Wang Z., Chen Y., Quan L.	Expression Analysis and Functional Characterization of <i>CER1</i> Family Genes Involved in Very-Long-Chain Alkanes Biosynthesis in <i>Brachypodium distachyon</i>.	Front Plant Sci	10	1389	2019		
47764	31691262	Passricha N., Saifi S.K., Kharb P., Tuteja N.	Rice Lectin receptor-like kinase provides salinity tolerance by ion homeostasis.	Biotechnol. Bioeng.	117(2)	498-510	2020		
47765	31783788	Kachewar N.R., Gupta V., Ranjan A., Patel H.K., Sonti R.V.	Overexpression of OsPUB41, a rice E3 ubiquitin ligase induced by cell wall degrading enzymes, enhances immune responses in Rice and Arabidopsis.	BMC Plant Biol.	19(1)	530	2019	UPS,AOS2,TIFY10C,PAL,PR1B,PR5,POX22.3,PAL1,NH1,PR1A,UGT74H4,_,OPR5,OPR9,GNS10,CHT1	OsUPS, OsPUB41, PUB41, CMPG1, OsCMPG1,OsAOS2, CYP74A2, OsAOS, OsAOS1,OsJAZ7, JAZ7, OsJAZ 8, OsJAZ8, Os-JAZ8, JAZ8, OsTIFY10c, OsTIFY10c/OsJAZ8,OsPAL, OsPAL08, PAL2, GP-28, GP28, PAL08, OsPAL2, OsPAL8, PAL8,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1, OsPR1a, PR1a,OsPR5, Pir2, PR-5, PR5-1,POX22.3, OSPER, OsPOX, POX, Pir3, prx111, POX22, OsPOX1, POX1, OsPOX22.3, OsPR9, PR9,OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6,OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2, DLN5, OsDLN5,  OsBTBA1, BTBA1,OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1, OsPR1b, PR1alpha, OsPR1alpha,OsUGT74H4, SGT1, OsSGT1, UGT74H12, OsUGT74H12,Lox2:Os:1, OsLOX9, LOX9, OsLOX8, LOX8, OsLOX2, LOX2, OsRLL, OsHI-LOX, HI-LOX, RLL2 LOX, RLL2, Lox2osPil, OsLOX2;1, LOX2;1, OsLOX1, OsLOX7, LOX7,OsOPR5, OsOPR6, OsOPR06-2, OPR4,OsOPR9, OsOPR01-2, OPR2,Gns10, OsGns10,Cht1*(Chi1), Ch16, Cht1, CHT-1, CH16, RC24, OsChia1a, OsChia1, Chi1, Cht1*, Chi-1, Cht-1, Cht1, RCC1, OsCht-1, PR3, OsPR3
47766	31749824	Chen Z., Zheng W., Chen L., Li C., Liang T., Chen Z., Xu H., Han Y., Kong L., Zhao X., Wang F., Wang Z., Chen S.	Green Fluorescent Protein- and <i>Discosoma</i> sp. red fluorescent protein-Tagged Organelle Marker Lines for Protein Subcellular Localization in Rice.	Front Plant Sci	10	1421	2019		
47767	31708278	Dai Z., Rizwan M., Gao F., Yuan Y., Huang H., Hossain M.M., Xiong S., Cao M., Liu Y., Tu S.	Nitric oxide alleviates selenium toxicity in rice by regulating antioxidation, selenium uptake, speciation and gene expression.	Environ. Pollut.	257	113540	2020		
47768	31694539	Yuenyong W., Sirikantaramas S., Qu L.J., Buaboocha T.	Isocitrate lyase plays important roles in plant salt tolerance.	BMC Plant Biol.	19(1)	472	2019	CAM1-1,ICL,WRKY71	OsCaM1, OsCam1-1, OsCaM1-1, CAM3, Cam1-1, OsCAM1.1, CAM1.1,OsEnS-107, EnS-107, OsI85, I85, OsICL, Osl85, l43, Osl43, OsL85,OsWRKY71, WRKY-71
47769	31760024	Tiwari S., Shweta S., Prasad M., Lata C.	Genome-wide investigation of GRAM-domain containing genes in rice reveals their role in plant-rhizobacteria interactions and abiotic stress responses.	Int. J. Biol. Macromol.			2019		
47770	31850010	Verma R.K., Santosh Kumar VV., Yadav S.K., Pushkar S., Rao M.V., Chinnusamy V.	Overexpression of ABA Receptor <i>PYL10</i> Gene Confers Drought and Cold Tolerance to Indica Rice.	Front Plant Sci	10	1488	2019	ABA1,LEA3-1,NCED2,NCED1,DHN1,_,DREB1F,MYB3R2,LIP5,NCED2,RAB16A,TPP1,PYL/RCAR3,NCED1,ABA8OX3	OsABA1, Zep1, OsAba1, Aba2, OsAba2, OsZep1, Zep, OsZep, Aba1, OsABA2, Osaba1, OsZEP-1, OsZEP, OSZEP1, ZEP1, ZEP,OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3, OsLEA3A, LEA3A,OsNCED2, OsNced2, OsCCD4b, CCD4b, OsCCD4c, CCD4c,OSNCED1, OsNCED-1, OsNCED3, OsNced3, NCED3, OsNCED9, NCED9,LIP9, OsLIP9, lip9, DHN1, DIP1, OsDip1, OsLEA23, OsDhn1, COR410, OsLEA23/DIP1, DIP1/OsLEA23,OsABA45, ABA45, OsGDP, GDP, OsASR, ASR,OsERF#027, OsERF027, OsERF27, ERF27, AP2/EREBP#081, AP2/EREBP81, OsDREB1F,OsMYB3R-2, OsMYB3R2, OsMSL07, MSL07, MSL7, DLN28, OsDLN28,OsLEA24, LEA24, WSI724, OsWSI724, OsLIP5,OSNCED2, OsNCED2, OsNCED5, NCED5,Rab16A, rab21, RAB21, OsRab21, OsRAB21, OsRAB-21, OsRab16A, OsLEA29, rab16A, OsRAB16A,OsTPP1, OsTPS, TPP,OsPYL/RCAR3, PYL3, OsPYL3, OsPYL10, PYL10, OsRCAR1, RCAR1 ,OsNCED1, OsCCD4a, CCD4a,OsABA8OX3, OsABA8ox3, CYP707A7, OsCYP707A7, OsAba-ox3, OsABA8ox3, OsABA8'ox3, ABA8'ox3, OsABAX3, ABAX3, OsABA8'OH3, ABA8'OH3
47771	31795257	Zhong H., Zhang H., Guo R., Wang Q., Huang X., Liao J., Li Y., Huang Y., Wang Z.	Characterization and Functional Divergence of a Novel <i>DUF668</i> Gene Family in Rice Based on Comprehensive Expression Patterns.	Genes (Basel)	10(12)		2019	DUF668-10,DUF668-11,DUF668-9,DUF668-2,DUF668-3,DUF668-12,DUF668-5,DUF668-4,DUF668-6,DUF668-8,DUF668-7,DUF668-1	OsDUF668-10,OsDUF668-11,OsDUF668-9,OsDUF668-2,OsDUF668-3,OsDUF668-12,OsDUF668-5,OsDUF668-4,OsDUF668-6,OsDUF668-8,OsDUF668-7,OsDUF668-1
47772	31712914	Sisharmini A., Apriana A., Khumaida N., Trijatmiko K.R., Purwoko B.S.	Expression of a cucumber alanine aminotransferase2 gene improves nitrogen use efficiency in transgenic rice.	J Genet Eng Biotechnol	17(1)	9	2019		
47773	31706032	He J., Zhang C., Dai H., Liu H., Zhang X., Yang J., Chen X., Zhu Y., Wang D., Qi X., Li W., Wang Z., An G., Yu N., He Z., Wang Y.F., Xiao Y., Zhang P., Wang E.	A LysM Receptor Heteromer Mediates Perception of Arbuscular Mycorrhizal Symbiotic Signal in Rice.	Mol Plant	12(12)	1561-1576	2019	AM1,AM10,AM3,AM14,AHA8,AM15,LYK5,PT11,CERK1	OsAM1, prx53, OsPRX53,AM10,OsAM3, OsLysMe2, LysMe2,OsAM14, OsARK1, ARK1,OSA8, OsA8, A8, osAHA8, AHA8, Os-HA1, OsHA1,OsAM15,OsLysM-RLK2, LysM-RLK2, OsLYK5, OsNFR5, NFR5, OsMYR1/OsLYK2, OsMYR1, OsLYK2, MYR1, LYK2, NFR5/MYR1,OsPT11, PHT1-11, OsPht1;11, ORYsa;PHT1;11,OsCERK1, OsLysM-RLK9, Os-CERK1, Os-LysM-RLK9, OsLysMRLK9, OsCERK1/OsLYK9, OsLYK9, LYK9
47774	31754432	Zhou S., Hu Z., Li F., Tian S., Zhu Z., Li A., Chen G.	Overexpression of <i>SlOFP20</i> affects floral organ and pollen development.	Hortic Res	6	125	2019		
47775	31574173	Wang S., Li L., Ying Y., Wang J., Shao J.F., Yamaji N., Whelan J., Ma J.F., Shou H.	A transcription factor OsbHLH156 regulates Strategy II iron acquisition through localising IRO2 to the nucleus in rice.	New Phytol.	225(3)	1247-1260	2020	YSL15,DMAS1,YSL16,NAS2,BHLH133,BHLH63,ENA1,NAS1,STAR1,HRZ2,FIT,NAAT1,IRO2,NAS3,TOM1,IRT1	OsYSL15, OsYs7,OsDMAS1, OsAKR5, AKR5,OsYSL16, Os-YSL16, OsYs14 ,OsNAS2, OsNAS1,OsbHLH133, bHLH133, OsRSL8, RSL8,OsIRO3, IRO3, OsbHLH063, bHLH063, bHLH63,OsENA1,OsNAS1,OsENA2, OsABCI12, ENA2, ABCI12, OsSTAR1, OsSATR1,OsRFPH2-24, OsHRZ2, OsRING150, RING150, CLG1, OsCLG1,OsbHLH156, OsFIT/OsbHLH156, OsFIT, bHLH156, OsIROP1, IROP1,OsNAAT1,OsIRO2, OsbHLH056, bHLH056, bHLH56, OsbHLH56,OsNAS3,OsTOM1, ZIFL4, OsZIFL4 ,OsIRT1, ZIP10, OsZIP10, OsZIP12, ZIP12
47776	31768809	Qin Q., Wang Y., Huang L., Du F., Zhao X., Li Z., Wang W., Fu B.	A U-box E3 ubiquitin ligase OsPUB67 is positively involved in drought tolerance in rice.	Plant Mol. Biol.	102(1-2)	89-107	2020		
47777	31707526	Lin J.H., Xu Z.J., Peng J.S., Zhao J., Zhang G.B., Xie J., Yi Z.X., Zhang J.H., Gong J.M., Ye N.H., Meng S.	OsProT1 and OsProT3 Function to Mediate Proline- and gamma-aminobutyric acid-specific Transport in Yeast and are Differentially Expressed in Rice (Oryza sativa L.).	Rice (N Y)	12(1)	79	2019	PROT3,PROT1,PROT	OsProT3, ProT3,OsProT1, ProT1 ,OsProT, ProT, OsProT2, ProT2
47778	31848246	He J., Liu Y., Yuan D., Duan M., Liu Y., Shen Z., Yang C., Qiu Z., Liu D., Wen P., Huang J., Fan D., Xiao S., Xin Y., Chen X., Jiang L., Wang H., Yuan L., Wan J.	An R2R3 MYB transcription factor confers brown planthopper resistance by regulating the phenylalanine ammonia-lyase pathway in rice.	Proc. Natl. Acad. Sci. U.S.A.	117(1)	271-277	2020	PAL1,_,_,2R_MYB84,PAL,PAL1,_,_	OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6,PAL03, OsPAL8, PAL8 ,OsPAL07, OsPAL, PAL07, OsPAL6, PAL6, PAL1, OsPAL7, PAL7,OsMYB30, MYB30, Os2R_MYB84,OsPAL, OsPAL08, PAL2, GP-28, GP28, PAL08, OsPAL2, OsPAL8, PAL8,OsPAL, Pal1*, Pal1, PAL, Pal_1, PalI, PAL2, OsPAL01, PAL01, OSPAL, CP-1, GP-1, OsPAL1, PAL3, OsPAL3,OsPAL02, PAL02, OsPAL5, PAL5, OsPAL2. PAL2, OsPAL1,OsPAL04, PAL04, PAL, OsPAL7, PAL7
47779	31871204	Zhang Y.C., He R.R., Lian J.P., Zhou Y.F., Zhang F., Li Q.F., Yu Y., Feng Y.Z., Yang Y.W., Lei M.Q., He H., Zhang Z., Chen Y.Q.	OsmiR528 regulates rice-pollen intine formation by targeting an uclacyanin to influence flavonoid metabolism.	Proc. Natl. Acad. Sci. U.S.A.	117(1)	727-732	2020	D3,_,MIR528,UCL23	d3, dwf3, D3/OsMAX2, Os_F0760, SOL1, OsORE9, ORE9, MAX2, OsRFPH2-10, RFPH2-10, OsD3,  OsFBL27, FBL27,POT,miR528, Osa-miR528, OsmiR528, OsMIR528, osa-MIR528, miR528*, osa-miR528, osa-miR528-5p, MIR528-T1, MIR528-T2,OsUCL23
47780	31792643	Liu C., Chen K., Zhao X., Wang X., Shen C., Zhu Y., Dai M., Qiu X., Yang R., Xing D., Pang Y., Xu J.	Identification of genes for salt tolerance and yield-related traits in rice plants grown hydroponically and under saline field conditions by genome-wide association study.	Rice (N Y)	12(1)	88	2019		
47781	31733092	Liu X.H., Lyu Y.S., Yang W., Yang Z.T., Lu S.J., Liu J.X.	A membrane-associated NAC transcription factor OsNTL3 is involved in thermotolerance in rice.	Plant Biotechnol. J.	18(5)	1317-1329	2020	CRT3,PDIL2-3,EIL2,EBP-89,ZFP179,BIP1,CRT2,HSP24.1,NAC8,NAC88,BZIP50,CML4,DLN129	CRT2, OsCRT2, OsCRT3,PDIL2;3, OsPDIL2;3, PDIL 2-3, OsPDIL2-3, OsTrx27, Trx27,OsEIL2,OsEBP-89, ebp-89, OsERF#060, OsERF060, OsERF60, ERF60, AP2/EREBP#027, AP2/EREBP27, OsEBP89, DLN76, OsDLN76,OsZFP179, DLN27, OsDLN27,OsBiP1, BiP1, BiP, Bip3, OsBiP3, BIP1/OsBIP3, OsMed37_2, Med37_2 ,CRT, OsCRT, CRT-2, OsCRT-2, OsCRT2,OsHsp24.1, OsHSP24.1,OsNAC8, ONAC074, ONAC74, NAC74, OsNAC8/ONAC074, OsNTL3, NTL3,ONAC088, ONAC88, OsNAC52, NAC52,OsbZIP60, bZIP50, OsbZIP50, OsbZIP74, bZIP74, OsbZIP50-S,OsCML4,OsDLN129
47782	32005379	Zhong R., Wang Y., Gai R., Xi D., Mao C., Ming F.	Rice SnRK protein kinase OsSAPK8 acts as a positive regulator in abiotic stress responses.	Plant Sci.	292	110373	2020		
47783	31852472	Jung I.J., Ahn J.W., Jung S., Hwang J.E., Hong M.J., Choi H.I., Kim J.B.	Overexpression of rice jacalin-related mannose-binding lectin (OsJAC1) enhances resistance to ionizing radiation in Arabidopsis.	BMC Plant Biol.	19(1)	561	2019	JAC1	OsJAC1, DIR54, OsDIR54, OsjDIR54, OsJRL29, JRL29
47784	31832906	Wu T., Peng C., Li B., Wu W., Kong L., Li F., Chu Z., Liu F., Ding X.	OsPGIP1-Mediated Resistance to Bacterial Leaf Streak in Rice is Beyond Responsive to the Polygalacturonase of Xanthomonas oryzae pv. oryzicola.	Rice (N Y)	12(1)	90	2019	_,SH11,CESA7,PGIP6,CSLA3,_,_,RSOSPR10,BC7,PAL1,PAL1,_,PGIP2,PGIP4,PGIP3,CESA5,CESA1,PGIP7,_,PGIP1,_,CHT8,BC15,FOR1,JIOSPR10	OsPAL07, OsPAL, PAL07, OsPAL6, PAL6, PAL1, OsPAL7, PAL7,OsJAmyb, JAmyb, OsJAMyb, OsMYB21, MYB21, Os2R_MYB91, 2R_MYB91, OgSH11, OsSH11,OsCesA7, OsCESA7, OS_CESA07, OsCesA 7, CesA7,Ospgip6, pgip6, OsPGIP6,OsCslA3, OsCSLA3 ,CAD,OsPAL05, PAL05, OsPAL3, PAL5, PAL3, OsPAL2;3, PAL2;3, OsPAL2-1, PAL2-1,RSOsPR10, RsOsPR10a, OsPR10a, OsPR10alpha, OsPR10, PR10, OsBETV1, BETV1,OsCesA4, OsCESA4, CESA4, OS_CESA04, BC11, bc7t, Bc7(t), bc-7, OsCesA 4, CesA4, FC17/CESA4, FC17, OsFC17,OsPAL, Pal1*, Pal1, PAL, Pal_1, PalI, PAL2, OsPAL01, PAL01, OSPAL, CP-1, GP-1, OsPAL1, PAL3, OsPAL3,OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6,OsPAL04, PAL04, PAL, OsPAL7, PAL7,Ospgip2, pgip2, OsPGIP2,Ospgip4, pgip4, OsPGIP4,Ospgip3, pgip3, OsPGIP3,OsCesA5, OsCESA5, OS_CESA05,OsCesA1, OsCesA-1, OsCESA1, OS_CESA01, CesA1,Ospgip7, pgip7, OsPGIP7,GLUB,Ospgip1, pgip1, OsPGIP1,OsGLU3, OsGH9A2, GLU3, GH9A2,Cht8, OsChia2a, Cht2, Rcht2, Chia2a, CHIT14, OsCHIT14, OsPR3,OsCTL1, CHIT13, OsCHIT13,OsFOR1, Osfor1, OsPGIP5, PGIP5,JIOsPR10, OsPR10, PR10, OsJiPR10, JiPR10, OsPR10c, PR10c
47785	31816902	Cui Y., Wang M., Yin X., Xu G., Song S., Li M., Liu K., Xia X.	OsMSR3, a Small Heat Shock Protein, Confers Enhanced Tolerance to Copper Stress in <i>Arabidopsis thaliana</i>.	Int J Mol Sci	20(23)		2019	HSP18.0	OsHSP18.0-CI, HSP18.0-CI, OsHsp18.0, OsHSP18.0, Oshsp18.0, OsSHSP1, SHSP1, OsMSR3, MSR3, OsHSP20, HSP20, OsHSP18.6, HSP18.6
47786	31863525	Zhou S.X., Zhu Y., Wang L.F., Zheng Y.P., Chen J.F., Li T.T., Yang X.M., Wang H., Li X.P., Ma X.C., Zhao J.Q., Pu M., Feng H., Li Y., Fan J., Zhang J.W., Huang Y.Y., Wang W.M.	Osa-miR1873 fine-tunes rice immunity against Magnaporthe oryzae and yield traits.	J Integr Plant Biol			2019	MIR1873	miR1873, osa-miR1873, osa-MIR1873
47787	31410483	Li Y., Zhu J., Wu L., Shao Y., Wu Y., Mao C.	Functional Divergence of PIN1 Paralogous Genes in Rice.	Plant Cell Physiol.	60(12)	2720-2732	2019		
47788	31852430	S?nchez-Sanuy F., Peris-Peris C., Tomiyama S., Okada K., Hsing Y.I., San Segundo B., Campo S.	Osa-miR7695 enhances transcriptional priming in defense responses against the rice blast fungus.	BMC Plant Biol.	19(1)	563	2019	PR10A,_,CYP76M6,CPS4,MAS,WRKY45,CYP71Z7,FRO2,HRZ1,GH2,ROMT9,PR1A,NRAMP1,IRO2,NAS2,PR1B,WRKY71,BHLH6,MIR7695,NRAMP6,NAC4,DREB1G,PR10B,CPS2,LAC23,DREB1E	PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsPOT, POT, OsIROPT1, IROPT1,OsCYP76M6, OsCYP76-5, CYP76-5, OsCYP71T5, CYP71T5,OsCPS4, CYC1, OsCYC1, OsCyc1, cpsl3, OsCPSL3, OsCPSsyn, OsCyc1/OsCPS4, OsTPS15, Os-CPS4, TPS11, OsTPS11,OsMAS, MAS1, OsMAS1, OsMAS/SDR110C-MS1, SDR110C-MS1, OsSDR110C-MS1, OsMS1, MS1,OsWRKY45, OsWRKY45-1, OsWRKY45-2, WRKY45-1, WRKY45-2,Oscyp71Z7, OsCYP71Z6, CYP71Z6,OsFRO2, OsFRO1,OsHRZ1,  OsRING149, RING149,gh2, CAD2, CAD, OsCAD2, OsGH2 ,COMT, OsCOMT, ROMT-9, OsCOMT1, OsCAldOMT1, CAldOMT1, OsOMT, OsCOMT15, COMT15,OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1, OsPR1b, PR1alpha, OsPR1alpha,OsNramp1, OsNRAMP1, OsNramp6,OsIRO2, OsbHLH056, bHLH056, bHLH56, OsbHLH56,OsNAS2, OsNAS1,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1, OsPR1a, PR1a,OsWRKY71, WRKY-71,OsbHLH006, bHLH006, OsbHLH6, bHLH6, RERJ1, OsRERJ1, bHLH35,miR7695, osa-miR7695, osa-MIR7695,OsNRAMP6, Nramp6, l-NRAMP6, s-NRAMP6, OsNramp6.8, OsNramp1,OsNAC4, NAC68, ONAC068, OnNAC4*, OnNAC4, OsNAC4/ONAC068,OsDREB1G, OsERF025, OsERF#025, OsERF25, ERF25, AP2/EREBP#138, AP2/EREBP138, OsDREB1I,RPR10b, PR-10b, PR10b, PBZ1, PBZ-1, OsPBZc, OsPR10b, BetV, OsBetV,OsCPS2, cps2, OsCPS2ent, CYC2, OsCyc2, OsCYC2, OsCPSL1, cpsl1, OsCyc2/OsCPS2, OsTPS7, Os-CPS2, TPS13, OsTPS13,OsLAC23, OsLAC19, LAC19,OsDREB1E, OsERF030, OsERF#030, OsERF30, ERF30, AP2/EREBP#160, AP2/EREBP160, OsDREB1-1
47789	31797121	Sarkar N.K., Kotak S., Agarwal M., Kim Y.K., Grover A.	Silencing of class I small heat shock proteins affects seed-related attributes and thermotolerance in rice seedlings.	Planta	251(1)	26	2019		
47790	31797032	Wang C., Tang Z., Zhuang J.Y., Tang Z., Huang X.Y., Zhao F.J.	Genetic mapping of ionomic quantitative trait loci in rice grain and straw reveals OsMOT1;1 as the putative causal gene for a molybdenum QTL qMo8.	Mol. Genet. Genomics	295(2)	391-407	2020		
47791	31832669	Wang W., Hu B., Li A., Chu C.	NRT1.1 in plants: functions beyond nitrate transporter.	J. Exp. Bot.			2019	NPF6.5,NLP3,NPF6.3,NRT1.1C,SPX4,PHR2,NBIP1	OsNRT1.1B, NRT1.1B, OsNPF6.5,OsNLP3,OsNRT1.1A, NRT1.1A, OsNRT1.1A/ OsNPF6.3, OsNPF6.3,OsNRT1.1C, OsNPF6.4, NPF6.4,OsSPX4, Os-SPX4,OsPHR2, Os-PHR2,OsNBIP1,  OsRING163, RING163
47792	31877922	Sato M., Nagano M., Jin S., Miyagi A., Yamaguchi M., Kawai-Yamada M., Ishikawa T.	Plant-Unique <i>cis</i>/<i>trans</i> Isomerism of Long-Chain Base Unsaturation is Selectively Required for Aluminum Tolerance Resulting from Glucosylceramide-Dependent Plasma Membrane Fluidity.	Plants (Basel)	9(1)		2019	SLD	OsSLD
47793	31851568	Wang Z., Shi M., Wei Q., Chen Z., Huang J., Xia J.	OsCASP1 forms complexes with itself and OsCASP2 in rice.	Plant Signal Behav	15(1)	1706025	2020	CASP1,CASP4,CASP2,CASP3,CASP5	OsCASP1,OsCASP4,OsCASP2,OsCASP3,OsCASP5
47794	31837469	Fang Z., Ji Y., Hu J., Guo R., Sun S., Wang X.	Strigolactones and Brassinosteroids Antagonistically Regulate the Stability of the D53-OsBZR1 Complex to Determine FC1 Expression in Rice Tillering.	Mol Plant	13(4)	586-597	2020	BIN2,BZR1,D61,D11,FC1,D3,D53,D14,NGR5,DLT	GSK2, Os GSK2, OsGSK2, Os BIN2, OsBIN2, BIN2/GSK2, OsSK22/OsGSK7, OsSK22, OsGSK7, SK22, GSK7, OsSK22/GSK2 ,OsBZR1, Os BZR1, OsBES1-6, BES1-6,d61*, dwf42, d61, OsBRI1, OSBRI1, BRI1, Os BRI1, Osbri1, OsBRKq1, BRKq1,d11(d8), dwf10, d8, D11/CYP724B1, d11, CYP724B1, GNS4, OsD11, PMM1, OsPMM1, PMM1/D11, NBG4, OsCPB1, CPB1, CPB1/D11,fc1, OsTB1, tb1, OsTB1/FC1, Os TB1, TB1, OsFC1, MP3, OsMP3,d3, dwf3, D3/OsMAX2, Os_F0760, SOL1, OsORE9, ORE9, MAX2, OsRFPH2-10, RFPH2-10, OsD3,  OsFBL27, FBL27,D53(D K3), DK3, Dwf34, SMXL6/7/8, OsD53,d14(d10), dwf13, d10, d14, D88, HTD2, OsHTD2, OsD14, qPPB3, D88/D14, HTD4,ERF142, OsERF#142, OsERF142, AP2/EREBP#049, AP2/EREBP49, SMOS1, OsSMOS1, SHB, OsAP2-EREBP-049, RLA1, RLA1/SMOS1, OsERF142/SMOS1, OsNGR5, GR5, OsGR5,dlt, OsGRAS32, OsDLT, OsDLT1, DTL1, OsGRAS-32, OsGRAS32, GRAS-32, GRAS32, SMOS2/DLT, SMOS2, OsSMOS2, OsGS6, GS6
47795	31852431	Yang J., Zhou Y., Zhang Y., Hu W., Wu Q., Chen Y., Wang X., Guo G., Liu Z., Cao T., Zhao H.	Cloning, characterization of TaGS3 and identification of allelic variation associated with kernel traits in wheat (Triticum aestivum L.).	BMC Genet.	20(1)	98	2019		
47796	31811157	Sera Y., Hanamata S., Sakamoto S., Ono S., Kaneko K., Mitsui Y., Koyano T., Fujita N., Sasou A., Masumura T., Saji H., Nonomura K.I., Mitsuda N., Mitsui T., Kurusu T., Kuchitsu K.	Essential roles of autophagy in metabolic regulation in endosperm development during rice seed maturation.	Sci Rep	9(1)	18544	2019	LEA17,RSUS3,AGPS2,HSP17.9A,SBE3,HSP101,LEA16,LEA3-1,AMY1A,AMY3D,ATG7,HSP16.9C,SSI,RSUS1,ALK,SBE1,AGPL1,AMY3A	OsLEA17, OsLEA3-2, LEA3-2, LEA1,RSus3(t), SUS3, SS3, OsScS3, RSs3, RSus3, OsSUS3, RSS3, OsEnS-111, Susy3, OsSusy3,OsAGPS2a, AGPS2A, AGPS2B, OsAGPS2, osagps2, APS2, APS2a, APS2b, AGPS2a, APGS2b, OsAGPS2b, AGPP, GAS8, OsAPS2, OsAPS2a, OsAPS2b,Oshsp17.9A, OsHsp17.9A, OsHSP17.9A-CI, Oshsp17.9,SBEIII*, SBEIII, Sbe3, RBE3, QEIIa, QEIIA, BEIIb, BEIIB, SBEIIb, OsBEIIb, sbe3, SBE III, OsSBEIIb, SBEIIb,Oshsp101, OsHSP101, ClpB-cyt, OsClpB-cyt, ClpB-C/Hsp100, OsClpB-C,OsLEA16,OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3, OsLEA3A, LEA3A,Amy1A/C*(RAmy1A/C), alpha Amy7, AMY1.1, Amy1A, RAmy1A/C, Amy1A/C*, Amy1, Amy1A_C, OsAmy1A, alphaAmy7-C, RAmy1A, AmyI-1, OsAmyI-1, OsRamy1A,Amy3D/E*(RAmy3D/E), alpha Amy3, AmyII-4, AMY1.3, Amy3D, Amy3D/E*, RAmy3D/E, Amy3D_E, Amy8, aAmy3, RAmy3D, OsAmy3D, alphaAmy3, OsRamy3D,OsATG7, Atg7,Oshsp16.9C, OsHsp16.9C, HSP16.9C, OsHSP16.9C-CI, Oshsp 16.9C,OsSSI, SSS 1, SSS1, SS1, OsSS1, SSSI, OsSSSI,sus1, RSus1(t), SUS1, SS2, OsScS2, RSs2, RSus1, SuSy1, OsSUS1, RSS2, RSus2, OsRSUS1,alk, SSII-3, OsSSIIa, OsSSII-3, SSIIa, SSS2A, OsSSIIaChr6, SS2a,sbe1, Rbe1. Sbe1, sbe1*(QEI), RBE1, BEI, SBE I, QEI, OsBEI, BE1, OsSBE1, OsSBEI, SBEI,OsAGPL1, OsAPL1, APL1, OsAGPL3, AGPL3, OsAGPSL3, AGPSL3,Amy3A/B/C*(RAmy3A/B/C), Amy3A, RAmy3A/B/C, Amy3A/B/C*, AMY1.2, Amy5, RAmy3A, OsEnS-129
47797	31872309	Wang C., Wang G., Gao Y., Lu G., Habben J.E., Mao G., Chen G., Wang J., Yang F., Zhao X., Zhang J., Mo H., Qu P., Liu J., Greene T.W.	A cytokinin-activation enzyme-like gene improves grain yield under various field conditions in rice.	Plant Mol. Biol.	102(4-5)	373-388	2020	LOGL5	OsLOGL5
47798	31884325	Huo K., Shangguan X., Xia Y., Shen Z., Chen C.	Excess copper inhibits the growth of rice seedlings by decreasing uptake of nitrate.	Ecotoxicol. Environ. Saf.	190	110105	2020		
47799	31877741	Imran S., Horie T., Katsuhara M.	Expression and Ion Transport Activity of Rice <i>OsHKT1;1</i> Variants.	Plants (Basel)	9(1)		2019	HKT4	OsHKT4, OsHKT1;1, HKT1;1, OsHKT2, RNC4, OsHKT1;1-FL, OsHKT1;1-V1, OsHKT1;1-V2, OsHKT1;1-V3, OsHKT1;1-V4, OsHKT1;1-V5, OsHKT1;1-V6, OsHKT1;1-V7, OsHKT1;1-V8
47800	31896032	Ohta M., Takaiwa F.	OsERdj7 is an ER-resident J-protein involved in ER quality control in rice endosperm.	J. Plant Physiol.	245	153109	2020		
47801	31736073	Ge Q., Zhang Y., Xu Y., Bai M., Luo W., Wang B., Niu Y., Zhao Y., Li S., Weng Y., Wang Z., Qian Q., Chong K.	cyclophilin OsCYP20-2 with a novel variant integrates defense and cell elongation for chilling response in rice.	New Phytol.	225(6)	2453-2467	2020	SLR1,CYP20-2,SODB	slr1-1, slr1, slr, GAI, OsGAI, OsSLR1, Os SLR1, OsRGA1, OsGRAS-18, OsGRAS-18, GRAS-18, GRAS18, SLR-1,OsCYP20-2, OsCYP-11, OsNuCYP20-2,SodB, Fe-SOD, Fe- SOD, OsFe-SOD, Fe+-SOD, OsFe+-SOD, OsFe-SODa, OsFe-SODb, OsFeSODb, FeSODb, OsFSD1.2, FSD1.2, FeSOD2, OsFSD2, FSD2, OsFSD1, FSD1, ALM1, OsALM1
47802	31733118	Liu X.L., Wang L., Wang X.W., Yan Y., Yang X.L., Xie M.Y., Hu Z., Shen X., Ai H., Lin H.H., Xu G.H., Yang J., Sun S.B.	Mutation of the chloroplast-localized phosphate transporter OsPHT2;1 reduces flavonoid accumulation and UV tolerance in rice.	Plant J.	102(1)	53-67	2020	MTR1,CAT4,CAT11,CAT7,C4H2,PT14,CAT2,4CL4,2ODD2,CM2;2,4CL3,F3H2	Mtr1, PDT, ADT, ADT1/MTR1, OsADT1, OsMTR1,OsCAT4,OsCAT11,OsCAT7,OsC4H, OsC4HL, C4H, OsC4H2,OsPT14, OsPHT2;1, PHT2;1,OsCAT2,Os4CL4,FLS, 2-ODD2, Os2-ODD2, Os2ODD2, OsF3H, F3H, F3H2, OsF3H2, OsF3H03g, F3H03g, OsSAH1, SAH1, OsF3H1, F3H1,OsCM2;2,Os4CL3, Os4CL2, Os4CL, 4CL2, 4CL,OsF3H-2, F3H-2, OsF3H2, FNS1, OsFNS1, OsSAH4, SAH4, OsF3H8, F3H8
47803	31819017	Kumari K., Kumar P., Sharma V.K., Singh S.K.	Genomic marker assisted identification of genetic loci and genes associated with variation of grain zinc concentration in rice.	J. Genet.	98		2019	ZIP1,NRAMP7,ONAC2	OsZIP1,OsNRAMP7,SNAC1, snac1, OsNAC9, ONAC002, ONAC2, ONAC033, ONAC33, ONAC043, ONAC43, ONAC044, ONAC44, OsNAC19, NAC19, SNAC1/ONAC002, OsSNAC1, OsNAC9, OsNAC1
47804	31883029	Sun B.R., Fu C.Y., Fan Z.L., Chen Y., Chen W.F., Zhang J., Jiang L.Q., Lv S., Pan D.J., Li C.	Genomic and transcriptomic analysis reveal molecular basis of salinity tolerance in a novel strong salt-tolerant rice landrace Changmaogu.	Rice (N Y)	12(1)	99	2019	PP2C8	OsPP2C08, PP2C08, OsPP2C8, OsPP12
47805	30912264	Zhang D., Guo X., Xu Y., Li H., Ma L., Yao X., Weng Y., Guo Y., Liu C.M., Chong K.	OsCIPK7 point-mutation leads to conformation and kinase-activity change for sensing cold response.	J Integr Plant Biol	61(12)	1194-1200	2019		
47806	31424513	Yang J., Xie M.Y., Yang X.L., Liu B.H., Lin H.H.	Phosphoproteomic Profiling Reveals the Importance of CK2, MAPKs and CDPKs in Response to Phosphate Starvation in Rice.	Plant Cell Physiol.	60(12)	2785-2796	2019		
47807	31842737	Wang R., Ma J., Zhang Q., Wu C., Zhao H., Wu Y., Yang G., He G.	Genome-wide identification and expression profiling of glutathione transferase gene family under multiple stresses and hormone treatments in wheat (Triticum aestivum L.).	BMC Genomics	20(1)	986	2019		
47808	31702850	Malik N., Ranjan R., Parida S.K., Agarwal P., Tyagi A.K.	Mediator subunit OsMED14_1 plays an important role in rice development.	Plant J.	101(6)	1411-1429	2020	TDR,PIN5B,NAL1,YUCCA4,IAA24,PIN1C,CYCA3;1,YUCCA9,COW1,SH1,CYCD4;1,PIN10B,ARF2,YAB5,IAA23,PIN10A,ARF3,IAA1,CDC2-1,YUCCA2,FST ,CYCB2;2,PIN1A,YUCCA6,MED14_1 ,ARF16,PIN1B,LRA1	tdr, OsbHLH005, bHLH005, OsbHLH5, bhlh5, TDR1, OsTDR, OsTDR1, OsMYC5, MYC5,PIN5C, OsPIN5c, OsPIN5b, PIN4,nal1, cul1, GPS, SPIKE, SPIKE/LSCHL4/NAL1/GPS, SPIKE/NAL1, LSCHL4, OsNAL1,OsYUCCA4, OsYUC4, YUC4, YUCCA6, OsYUCCA6,OsIAA24,PIN1B, OsPIN1B, OsPIN1b, OsPIN1c,CycA3;1, CycA3;os;1, Orysa;CycA3;1, CYCA2.2,OsYUCCA9, OsYUC9, YUC9,OsCOW1, oscow1, OsYUC8, YUC8, NAL7, OsNAL7, OsYUCCA8, YUCCA8, FMO, OsFMO(t), REIN7, YUC8/REIN7,YAB2, OsYAB2, OsSh1, Sh1, OsFIL2, OsSH1, Osh1,CycD2;1, CYCD2-1, Orysa;CycD2;1, OsCYCD2;1, Orysa;CycD4;1, CycD4;1, CYCD4-1, Orysa;CYCD4;1, cycD, OsCYCD4;1,,PIN3B, OsPIN3b, OsPIN10b,OsARF2, OsARF4, ARF4,OsYABBY5, OsYAB3, YAB3, Os YABBY5, TOB1, OsTPB1,OsIAA23,PIN3A, OsPIN3a, OsPIN3t, OsPIN10a, OsPIN3,OsARF3, ETT3, Os ETT3, OsETT3, DLN20, OsDLN20, ARF4, OsARF3lb, ARF3lb,OsIAA1, OsIAA4,cdc2Os-1, CDC2Os-1, CDKA-1, CDKA;1, Orysa;CDKA;1, OsCDKA;1, cdc2Os1, Rcdc2-1, OsCDKA1, CDKA1, CDC20S-1, OsCDC20S-1 ,OsYUCCA2, OsYUC2, YUC2,OsMADS29, MADS29, OsFST,cycB2;2 (=cycOs2), cycB2;2, cycOs2, CycB2;2, CycOs2, CYCB2-2, CYCOS2, CycB2-Os2, CYCB2, CycB2;os;2, OsCycB2;2, Orysa;CycB2;2, OsCYCOS2, Os;cycB2;2, CYCB2.2, OsCYCB2.2,PIN1C, OsPIN1C, OsPIN1c, OsPIN1a,OsYUCCA6, OsYUC6, YUC6,OsMED14_1,OsARF16, OsARF2, OsARF1,PIN1A, OsPIN1A, OsPIN1a, REH1, OsPIN1, OsPIN1b, REH1/OsPIN1,OsPIN2, PIN2, OsLRA1, WAR1, OsWAR1
47809	31758804	Wang P., Yamaji N., Inoue K., Mochida K., Ma J.F.	Plastic transport systems of rice for mineral elements in response to diverse soil environmental changes.	New Phytol.	226(1)	156-169	2020	NPF2.4,NPF6.5,HTNE,AMT1;1,NRT1.5A,AMT2;3,NPF6.3,AMT2;2,AMT1;2,AMT1;3	OsNPF2.4, OsPTR2, PTR2,OsNRT1.1B, NRT1.1B, OsNPF6.5,NRT2.3, OsNRT2.3, OsNRT2;1, OsNRT2.3a, OsNRT2.3b, OsNRT2;3a, OsNRT2.5 ,OsAMT1;1, OsAMT1:1, OsAMT1, AMT1-1, AMT1, OsAMT1p, OsAMT1-1, Osamt1-1, "OsAMT1,1", OsAMT1.1, AMT1.1, FCO12,OsNRT1.5A,OsAMT2;3, AMT2;3, OsAMT2.3,OsNRT1.1A, NRT1.1A, OsNRT1.1A/ OsNPF6.3, OsNPF6.3,OsAMT2;2, AMT2;2, OsAMT2.2,OsAMT1;2, AMT1-2, Osamt1-3, "OsAMT1,3", OsAMT1;3, OsAMT1.3, OsAMT1.2, AMT1.2,OsAMT1;3, AMT1-3, Osamt1-2, "OsAMT1,2", OsAMT1;2, OsAMT1.3, AMT1.2
47810	31871071	Jiao X., Wang H., Yan J., Kong X., Liu Y., Chu J., Chen X., Fang R., Yan Y.	Promotion of BR Biosynthesis by miR444 Is Required for Ammonium-Triggered Inhibition of Root Growth.	Plant Physiol.	182(3)	1454-1466	2020	MIR444F,MADS25,MIR444E,DWARF4,MADS57,BRD2,D61,MIR444C,MADS61,MIR444B,BZR1,MADS23,MADS27,MIR444D,MIR444A,BRD1,D11	miR444f, osa-MIR444f,OsMADS25,miR444e, osa-MIR444e,OsDWARF4, osdwarf4, OsDWF4, DWF4, CYP90B2, OsCYP90B2, D4, OsD4,OsMADS57, MADS-57,brd2, OsBRD2, Dim/dwf1, Dim, dwf1, OsDWF1, DWF1, LTBSG1, OsLTBSG1, LHDD10, OsLHDD10, OsD-LDH3, D-LDH3,d61*, dwf42, d61, OsBRI1, OSBRI1, BRI1, Os BRI1, Osbri1, OsBRKq1, BRKq1,miR444c, osa-MIR444c, osa-miR444c, osa-miR444c.1, osa-miR444c.2,OsMADS61, MADS-27b,miR444b, osa-MIR444b, osa-miR444b, osa-miR444b.1, osa-miR444b.2,OsBZR1, Os BZR1, OsBES1-6, BES1-6,OsMADS23, MADS-23,OsMADS27, MADS-27a, OsSTA66, OsMADS27a,miR444d, osa-MIR444d, osa-miR444d, osa-miR444d.1, osa-miR444d.2, osa-miR444d.3,OsMIR444a, osa-MIR444a, miR444aosa-miR444a osa-miR444a-3p.1 osa-miR444a-3p.2 osa-miR444a-5p,brd1, OsDWARF, DWARF, OsBR6ox, BR6ox, CYP85A1, CYP85A4, OsDWF, CYP85A1/OsDWARF, OsBRD1, OsCYP85A1,d11(d8), dwf10, d8, D11/CYP724B1, d11, CYP724B1, GNS4, OsD11, PMM1, OsPMM1, PMM1/D11, NBG4, OsCPB1, CPB1, CPB1/D11
47811	31823718	Chen L., Deng R., Liu G., Jin J., Wu J., Liu X.	Cytological and transcriptome analyses reveal OsPUB73 defect affects the gene expression associated with tapetum or pollen exine abnormality in rice.	BMC Plant Biol.	19(1)	546	2019	PTC1,CYP703A3,PUB73,CYP704B2,ABCG15,MS2,UDT1,AP37 ,_,PME20,KAR,NIP4;1	OsMS1, tms9-1, OsPTC1, MS1, TMS9-1, OsTMS9-1,OsCYP703A3,OsPUB73,OsCYP704B2,OsABCG15, PDA, PDA1, OsABCG15/PDA1,OsMS2, OsDPW, DPW, DPW1, OsDPW1, OsFAR2, FAR2,Udt1, bHLH164, OsUDT1, OsbHLH164 ,OsAP37,OS-RP2, LTPL2, OsLTPL2,OsPME20, OsEnS-109,,OsNIP4;1, NIP4-1, OsNIP4.1, NIP4.1
47812	31988264	Lee W.C., Hou B.H., Hou C.Y., Tsao S.M., Kao P., Chen H.M.	Widespread Exon Junction Complex Footprints in the RNA Degradome Mark mRNA Degradation before Steady State Translation.	Plant Cell	32(4)	904-922	2020		
47813	31911456	Breeze E.	Make, Modify, Move: Multilayered Regulation of ONAC054 during ABA-Induced Leaf Senescence.	Plant Cell	32(3)	532-533	2020		
47814	31919298	Yang Z., Yang J., Wang Y., Wang F., Mao W., He Q., Xu J., Wu Z., Mao C.	PROTEIN PHOSPHATASE95 Regulates Phosphate Homeostasis by Affecting Phosphate Transporter Trafficking in Rice.	Plant Cell	32(3)	740-757	2020	PP2C62, CK2ALPHA3,PT2,CK2BETA3,LTN1,PT8,PHF1	OsPP2C62, OsPP95, PP95,OsCK2alpha3, CK2alpha3, OsCKA2-3, CKA2-3,OsPT2, PTH1-2, OsPht1;2, PHT1;2, OsPHT1;2,CK2beta3, OsCK2beta3,LTN1, OsPHO2, PHO2.1, PHO2.2, PHO2, OsUBC35, UBC35,OsPT8, PHT1-8, OsPht1;8, Pht1;8, PHT1;8, OsPHT1;8,OsPHF1, OsWD40-137, OsSEC12
47815	31911455	Sakuraba Y., Kim D., Han S.H., Kim S.H., Piao W., Yanagisawa S., An G., Paek N.C.	Multilayered Regulation of Membrane-Bound ONAC054 Is Essential for Abscisic Acid-Induced leaf senescence in Rice.	Plant Cell	32(3)	630-649	2020	NAC58,NYC1,SGR,NAC106,BZIP23,NOL,RIM1,TIL1,BZIP72,NAC1,ABI5	OsNAP, NAP, ONAC058, ONAC58, Os PS1, PS1, OsCTb1, CTb1,nyc1, OsNYC1,sgr(t), sgr, OsSGR, OsSgr, SGR1, OsSGR1,ONAC106,OsbZIP23, OsAREB1, OsABF2, Osbzip23, OsAREB2, OsZIP23, ZIP23,nol, NOL1, OsNOL, OsNOL1,ONAC054, ONAC54, NAC54, ONAC054alpha, ONAC054beta,NAC2, OsNAC2, ONAC004, ONAC4, ONAC034, ONAC34, ONAC058, ONAC58, OMTN2, Ostil1, OsNAC2/ONAC004, OsORE1.2, DLN113, OsDLN113,OsbZIP72, OsAREB2, OsABF4, ABF4, Osbzip72, OsABI5, ABI5,OsNAC1, ONAC027, ONAC27, NAC27, OMTN1, OsNAC1/ONAC027, DLN60, OsDLN60, OsORE1,OsABI5, OsbZIP10, OsABF1, OREB1, OsABI5-1, OsABI5-2, OsOREB1, OREB1 
47816	32194605	Kim Y.S., Park S.I., Kim J.J., Boyd J.S., Beld J., Taton A., Lee K.I., Kim I.S., Golden J.W., Yoon H.S.	Expression of Heterologous <i>OsDHAR</i> Gene Improves Glutathione (GSH)-Dependent Antioxidant System and Maintenance of Cellular Redox Status in <i>Synechococcus elongatus</i> PCC 7942.	Front Plant Sci	11	231	2020	DHAR1	OsDHAR1, DHAR, cytDHAR, OscytDHAR, OsDHAR
47817	32210988	Hanamata S., Sawada J., Ono S., Ogawa K., Fukunaga T., Nonomura K.I., Kimura S., Kurusu T., Kuchitsu K.	Impact of Autophagy on Gene Expression and Tapetal Programmed Cell Death During pollen Development in Rice.	Front Plant Sci	11	172	2020	PTC1,GAMYB,MS188,ATG7,CYP704B2,AP38,RADC1,OSC4,EAT1	OsMS1, tms9-1, OsPTC1, MS1, TMS9-1, OsTMS9-1,OsGAMYB, GAM1, OsGAMyb, Os-MYBGA, Os GAMYB, OsMYBGA, MYBGA, Os2R_MYB15, 2R_MYB15 ,OsMYB80, MYB80, OsMS188, Os2R_MYB44, 2R_MYB44, OsMYB103/OsMYB80/OsMS188/BM1, OsMYB103, MYB103,OsATG7, Atg7,OsCYP704B2,OsAP38,OsAP25, Radc1, OsRADC1, AP25,Osc4, OsC4, Osg4B, OsLTPc1, OsLtpIII.1, C4,OsEAT1, OsbHLH141, EAT1/DTD1, bHLH141, DTD1, DTD, DLN120, OsDLN120
47818	32457808	Li J., Zhang M., Sun J., Mao X., Wang J., Liu H., Zheng H., Li X., Zhao H., Zou D.	Heavy Metal Stress-Associated Proteins in Rice and <i>Arabidopsis</i>: Genome-Wide Identification, Phylogenetics, Duplication, and Expression Profiles Analysis.	Front Genet	11	477	2020	HIPP31,HIPP45,HIPP54,HIPP46,ATX1,HIPP57,CCH,HIPP29,HPP7,HIPP39,HPP1,HIPP56,HMA4,HIPP38,HIPP59,HIPP43,HMP31,HIPP40,HIPP41,HIPP32,HMA9,HIPP36,HMA6,HMP5,HPP4,HIPP28,HMA8,PI21,HIPP33,HMA5,HPP5,HIPP52,HMP4,HIPP35,HIPP34,HIPP22,HMP8,ATX,HIPP42,HIPP51,GCC7,HIPP47,HIPP50,HIPP30,HMP41,HIPP48	OsHMP16, HMP16, OsHIPP31, OsaHIP31, HIP31 ,OsHMP21, HMP21, OsHIPP45, OsaHIP45, HIP45 ,OsHMP36, HMP36, OsHIPP54, OsaHIP54, HIP54 ,OsHMP39, HMP39, OsHIPP46, OsaHIP46, HIP46 ,OsATX1, OsaATX1, OsHMP37, HMP37,OsHMP30, HMP30, OsHIPP57, OsaHIP57, HIP57 ,OsATX1, OsCCH, OsaCCH, ATX1, OsHMP14, HMP14,OsHMP25, HMP25, OsHIPP29, OsaHIP29, HIP29 ,OsHMP40, HMP40, OsHPP7, OsaHPP07, HPP07,OsHMP17, HMP17, OsHIPP39, OsaHIP39, HIP39 ,OsHMP10, HMP10, OsHPP1, OsaHPP01, HPP01 ,OsHMP9, HMP9, OsHMP09, OsHIPP56, OsaHIP56, HIP56 ,OsHMA7, osHMA4, HMA7, OsHMP12, HMP12,OsHMP2, HMP2, OsHMP02, OsHIPP38, OsaHIP38, HIP38 ,OsHMP38, HMP38, OsHIPP59, OsaHIP59, HIP59 ,OsHMP3, HMP3, OsHMP03, OsHIPP43, OsaHIP43, HIP43 ,OsHMP31,OsHMP44, HMP44, OsHIPP40, OsaHIP40, HIP40 ,OsHMP19, HMP19, OsHIPP41, OsaHIP41, HIP41 ,OsEnS-104, OsHMP35, HMP35, OsHIPP32, OsaHIP32, HIP32, HIP7_Ath,OsHMA9 ,oshma9-1, oshma9-2, HMA9, OsHMP33, HMP33,OsHMP18, HMP18, OsHIPP36, OsaHIP36, HIP36 ,OsHMA5, osHMA6, HMA5, OsHMP11, HMP11,OsHMP5, OsHMP05,OsHMP15, HMP15, OsHPP4, OsaHPP04, HPP04 ,OsHMP42, HMP42, OsHIPP28, OsaHIP28, HIP28 ,OsHMA6, osHMA8, HMA6, OsHMP20, HMP20,pi21, rMg40, OsHMP26, HMP26, OsHIPP5, HIPP5, OsaHIP05, HIP05 ,OsHMP13, HMP13, OsHIPP33, OsaHIP33, HIP33 ,OsHMA8, osHMA5, HMA8, OsHMP27, HMP27,OsHMP22, HMP22, OsHPP5, OsaHPP05, HPP05 ,OsHMP46, HMP46, OsHIPP52, OsaHIP52, HIP52 ,OsHMP4, OsHMP04,OsHMP43, HMP43, OsHIPP35, OsaHIP35, HIP35 ,OsHMP23, HMP23, OsHIPP34, OsaHIP34, HIP34 ,OsHMP29, HMP29, OsHIPP22, OsaHIP22, HIP22 ,OsHMP8, OsHMP08,OsATX, OsHMP7, HMP7, OsHMP07,OsHMP24, HMP24, OsHIPP42, OsaHIP42, HIP42 ,OsHMP45, HMP45, OsHIPP51, OsaHIP51, HIP51 ,HMA3, OsHMA3, OsHMA3a, OsHMA3n, osHMA3, OsHMP34, HMP34,OsHMP6, HMP6, OsHMP06, OsHIPP47, OsaHIP47, HIP47,OsHMP1, HMP1, OsHMP01, OsHIPP50, OsaHIP50, HIP50 ,OsHMP28, HMP28, OsHIPP30, OsaHIP30, HIP30 ,OsHMP41,OsHMP32, HMP32, OsHIPP48, OsHIPP48, OsaHIP48, HIP48 
47819	31913304	Min M.K., Kim R., Moon S.J., Lee Y., Han S., Lee S., Kim B.G.	Selection and functional identification of a synthetic partial ABA agonist, S7.	Sci Rep	10(1)	4	2020		
47820	32234217	Wei Z., Chen Y., Zhang B., Ren Y., Qiu L.	GmGPA3 is involved in post-Golgi trafficking of storage proteins and cell growth in soybean cotyledons.	Plant Sci.	294	110423	2020		
47821	31993066	Zeng Y., Wen J., Zhao W., Wang Q., Huang W.	Rational Improvement of Rice Yield and cold tolerance by Editing the Three Genes <i>OsPIN5b</i>, <i>GS3</i>, and <i>OsMYB30</i> With the CRISPR-Cas9 System.	Front Plant Sci	10	1663	2019	BMY10 ,LK3,PIN5B,CYCT1;1,YUCCA1,H1,MYB30	OsBMY10, OsBES1-3, BES1-3,lk3(t), lk3(t)*, SG3, GS3, SG3-GS3, OsGW3, OsGS3, RGG3/GS3/Mi/OsGGC1, RGG3, Mi, OsGGC1, GGC1, OsSYL3, SYL3, TT2, OsTT2,PIN5C, OsPIN5c, OsPIN5b, PIN4,CycT1;1, CycT1;os;1, Orysa;CycT1;1, CYCT1,OsYUCCA1, OsYUC1, YUC1,OsH1, OsHis1.1, His1.1,OsMYB30, OsMYB5P, MYB5P, OsMYB13a, MYB13a, Os2R_MYB26, 2R_MYB26, OsMYB30C, MYB30C
47822	32425965	Hasegawa K., Kamada S., Takehara S., Takeuchi H., Nakamura A., Satoh S., Iwai H.	Rice Putative Methyltransferase Gene <i>OsPMT16</i> Is Required for Pistil Development Involving Pectin Modification.	Front Plant Sci	11	475	2020	_	OsSTA181, STA181, OsPMT16, PMT16
47823	31932034	Hayashi S., Tanikawa H., Kuramata M., Abe T., Ishikawa S.	Domain exchange between Oryza sativa phytochelatin synthases reveals a region that determines responsiveness to arsenic and heavy metals.	Biochem. Biophys. Res. Commun.	523(2)	548-553	2020		
47824	31513272	Cui L.H., Byun M.Y., Oh H.G., Kim S.J., Lee J., Park H., Lee H., Kim W.T.	Poaceae Type II galactinol synthase 2 from Antarctic Flowering Plant Deschampsia antarctica and Rice Improves Cold and Drought Tolerance by Accumulation of Raffinose Family Oligosaccharides in Transgenic Rice Plants.	Plant Cell Physiol.	61(1)	88-104	2020		
47825	31991765	Jia Y., Li C., Li Q., Liu P., Liu D., Liu Z., Wang Y., Jiang G., Zhai W.	Characteristic Dissection of <i>Xanthomonas oryzae</i> pv. o<i>ryzae</i> Responsive MicroRNAs in Rice.	Int J Mol Sci	21(3)		2020	DCL1,RIR1,HUB2,_,HEMA,AGO1B,GF14C,ORAP1,WJUMK1,MIR164A,AGO1A,MIR160A,_,MIR1432,NAC60,MIR167D,MIR528,miR159B,SIP31,GAMYB,RMT1,MIR167A,UGT83A1	Dcl1, OsDCL1, osDCL1, Os-DCL1, OsDCL1a, DCL1a,OsLRR-RLK2, LRR-RLK2, OsRIR1,OsHUB2, FRRP1, DLN241, OsDLN241,  OsRING378, RING378,,HEMA1, OsHEMA, GluTR, OsHEMA1, hemA,OsAGO1b, AGO1b, AGO1-2 ,GF14c, OsGF14c, 14-3-3c,OsORAP1, OzT9, AO, OsAAO4, AAO4,OsMPK20-4, MPK20-4, OsWJUMK, OsWJUMK1, WJUMK, MAPK8, OsMPK8, MPK8, OsMAPK20-4, MAPK20-4, OsMPKG1, MPKG1,miR164a, osa-miR164a,OsAGO1a, AGO1a, AGO10, AGO1-1 ,miR160a, osa-miR160a, osa-MIR160aosa-miR160a-3p osa-miR160a-5p, OsMIR160a ,OsWD40-174, WD40-174,miR1432, osa-miR1432, osa-miR1432-5p, osa-MIR1432,ONAC060, ONAC60, OMTN3, OsNAC60, DLN265, OsDLN265,miR167d, osa-miRNA167d, osa-miR167d, osa-miR167d-3p, osa-miR167d-5p,miR528, Osa-miR528, OsmiR528, OsMIR528, osa-MIR528, miR528*, osa-miR528, osa-miR528-5p, MIR528-T1, MIR528-T2,OsmiR159b, osa-MIR159b,OsSIP31,OsGAMYB, GAM1, OsGAMyb, Os-MYBGA, Os GAMYB, OsMYBGA, MYBGA, Os2R_MYB15, 2R_MYB15 ,OsRMT1,  OsRING362, RING362,miR167a, osa-miR167aosa-miR167a-3p osa-miR167a-5p, OsmiR167a,OsUGT83A1
47826	32351516	Wang D., Xu T., Yin Z., Wu W., Geng H., Li L., Yang M., Cai H., Lian X.	Overexpression of OsMYB305 in Rice Enhances the Nitrogen Uptake Under Low-Nitrogen Condition.	Front Plant Sci	11	369	2020	CSLF8,BC1,PSR1,MYB48,DLN231,NAR2.1,NRT2.2,BC7,CESA7,CCR4,LAC11,_,CSLE6,NRT2.1,GH9A3,BC6,MYB8	OsCslF8, OsCSLF8,bc1, bc-1, OsBC1, CWA1, FP1, OsPCS3, PCS3,PSR1, NiR, OsNiR, OsNIR1, NIR1, FD-NiR, OsNiR2,OsMYB48, OsMYB48-1, OsMYB48-2, OsMYB59, MYB59, Os2R_MYB19, 2R_MYB19 ,R2R3-MYB, OsDLN231, OsMYB108, MYB108, OsMYB31, MYB31, Os2R_MYB86, Os2R_MYB86, 2R_MYB86 ,OsNAR2.1, OsNRT3.1A,OsNRT2.2, OsNRT2.1,OsCesA4, OsCESA4, CESA4, OS_CESA04, BC11, bc7t, Bc7(t), bc-7, OsCesA 4, CesA4, FC17/CESA4, FC17, OsFC17,OsCesA7, OsCESA7, OS_CESA07, OsCesA 7, CesA7,OsCCR4, OsCCR1, CCR1 ,Lac, OsLAC11, LAC10, OsLAC10,ROMT-17, ROMT17, CCoAOMT1,OsCslE6, OsCSLE6,OsNRT2.1, OsNRT2.2,OsGH9A3,Bc6*, Bc6, OsCesA9, CESA9, OsCESA9, OS_CESA09, OsCesA 9, CesA9, BC88, SDBC1, OsSDBC1,OsMYB8, OsMYB305, MYB305, Os2R_MYB9, 2R_MYB9 
47827	32112956	Sun L., Di D.W., Li G., Li Y., Kronzucker H.J., Shi W.	Transcriptome analysis of rice (Oryza sativa L.) in response to ammonium resupply reveals the involvement of phytohormone signaling and the transcription factor OsJAZ9 in reprogramming of nitrogen uptake and metabolism.	J. Plant Physiol.	246-247	153137			
47828	31930666	Selvaraj M.G., Jan A., Ishizaki T., Valencia M., Dedicova B., Maruyama K., Ogata T., Todaka D., Yamaguchi-Shinozaki K., Nakashima K., Ishitani M.	Expression of the CCCH-tandem zinc finger protein gene OsTZF5 under a stress-inducible promoter mitigates the effect of drought stress on rice grain yield under field conditions.	Plant Biotechnol. J.			2020	C3H33	OsC3H33, OsTZF5, TZF5, OsCCCH-Zn-5, CCCH-Zn-5
47829	32265974	Liao P., Leung K.P., Lung S.C., Panthapulakkal Narayanan S., Jiang L., Chye M.L.	Subcellular Localization of Rice acyl-CoA-Binding Proteins ACBP4 and ACBP5 Supports Their Non-redundant Roles in Lipid Metabolism.	Front Plant Sci	11	331	2020	ACBP4,ACBP5	OsACBP4,OsACBP5
47830	32081268	Gao S., Song T., Han J., He M., Zhang Q., Zhu Y., Zhu Z.	A calcium-dependent lipid binding protein, OsANN10, is a negative regulator of osmotic stress tolerance in rice.	Plant Sci.	293	110420	2020		
47831	32158457	Shindo M., Yamamoto S., Shimomura K., Umehara M.	Strigolactones Decrease leaf angle in Response to Nutrient Deficiencies in Rice.	Front Plant Sci	11	135	2020	SLB2,D10,D3,D17,D14,SLB1,D27	CYP711A1, OsCYP711A1, Os1400/CYP711A3, Os1400, CYP711A3, OsCYP711A3, OsMAX1-1400, MAX1-1400,d10(d15,d16), d16, d15, dwf9, d10, OsCCD8b, OsCCD8, CCD8, OsD10,d3, dwf3, D3/OsMAX2, Os_F0760, SOL1, OsORE9, ORE9, MAX2, OsRFPH2-10, RFPH2-10, OsD3,  OsFBL27, FBL27,d17(t), dwf14, d17, htd1, OsCCD7, CCD7, D17/HTD1, HTD1, OsHTD1, OsD17,d14(d10), dwf13, d10, d14, D88, HTD2, OsHTD2, OsD14, qPPB3, D88/D14, HTD4,OsSLB1, Os900/CYP711A2, Os900, CYP711A2, OsCYP711A2, OsCO, CO,d27(d t), dt, dwf23, d27, OsD27
47832	32194600	Jiang M., Wu X., Song Y., Shen H., Cui H.	Effects of <i>OsMSH6</i> Mutations on Microsatellite Stability and Homeologous Recombination in Rice.	Front Plant Sci	11	220	2020	MSH6	OsMsh6, Msh6, OsMSH6
47833	31932727	Li C., Zhang R., Meng X., Chen S., Zong Y., Lu C., Qiu J.L., Chen Y.H., Li J., Gao C.	Targeted, random mutagenesis of plant genes with dual cytosine and adenine base editors.	Nat. Biotechnol.			2020		
47834	31613368	Nutan K.K., Singla-Pareek SL., Pareek A.	The Saltol QTL-localized transcription factor OsGATA8 plays an important role in stress tolerance and seed development in Arabidopsis and rice.	J. Exp. Bot.	71(2)	684-698	2020		
47835	31992813	Guo L.M., Li J., He J., Liu H., Zhang H.M.	A class I cytosolic HSP20 of rice enhances heat and salt tolerance in different organisms.	Sci Rep	10(1)	1383	2020	HSP18.0	OsHSP18.0-CI, HSP18.0-CI, OsHsp18.0, OsHSP18.0, Oshsp18.0, OsSHSP1, SHSP1, OsMSR3, MSR3, OsHSP20, HSP20, OsHSP18.6, HSP18.6
47836	31980616	Zhao H., Duan K.X., Ma B., Yin C.C., Hu Y., Tao J.J., Huang Y.H., Cao W.Q., Chen H., Yang C., Zhang Z.G., He S.J., Zhang W.K., Wan X.Y., Lu T.G., Chen S.Y., Zhang J.S.	Histidine kinase MHZ1/OsHK1 interacts with ethylene receptors to regulate root growth in rice.	Nat Commun	11(1)	518	2020	RR7,RR21,AHP1,ETR2,ERS2,RAP2.8,ERF2,HK1,EIL1A,AHP2,EIN2	rr7, OsRR7, Rra5, OsRRA5,OsRR21, Rrb1, Orr1, OsRR19, RR19, OsRRB1, ORR1,OHP1, HPt, OsAHP1, Hpt2, Ohp1, OsHP2, HP2, OsHpt2, OsHPt2, OsHP02,etr2, OsPK1, PK1, ERL1, OsETR2, OsERL1, OS-ETR2, OsERS3,OS-ERS2, OsERS2, OsERS2a, OsERS2b, OsERS2c,OsRAP2.8, NGAL1-1, OsNGAL1-1,OsWR4, WR4, OsERF#002, OsERF002, ERF002, OsERF2, AP2/EREBP#100, AP2/EREBP100,OsHK1, OHK1, MHZ1/OsHK1, MHZ1, OsMHZ1,EIL1, OsEIL1, EIL1a, OsEIL1a, MHZ6/OsEIL1, MHZ6, OsMHZ6,OHP2, HPt, OsAHP2 Hpt3, Ohp2, OsHP1, HP1, OsHpt3, OsHP01,OsEIN2, MHZ7/OsEIN2, OsEIN2/MHZ7, MHZ7 
47837	32226436	Yan G., Fan X., Peng M., Yin C., Xiao Z., Liang Y.	Silicon Improves Rice Salinity Resistance by Alleviating Ionic Toxicity and Osmotic Constraint in an Organ-Specific Pattern.	Front Plant Sci	11	260	2020	PIP2A,PIP2;4,PIP1;2,PIP2;2,PIP2;6,PIP1A	OsPIP2a, PIP2-1, PIP2a, PIP2.1, OsPIP2;1, PIP2;1, OsPIP2-1,OsPIP2;4, PIP2.4, PIP2-4, OsPIP2-4,OsPIP1;2, PIP1-2, OsPIP1-2,OsPIP2;2, PIP2-2, OsPIP2-3,OsPIP2;6, PIP2-6, OsPIP2-6, PIP2-5, OsPIP2-5,OsPIP1a, OsPIP1;1, PIP1a, RWC-1, PIP1-1, RWC1, OsPIP1-1, PIP1;1, PIP1-5
47838	31953375	Lu Y., Feng Z., Meng Y., Bian L., Xie H., Mysore K.S., Liang J.	SLENDER RICE1 and <i>Oryza sativa</i> INDETERMINATE DOMAIN2 Regulating OsmiR396 Are Involved in stem elongation.	Plant Physiol.	182(4)	2213-2227	2020	GS2,GRF2,GRF8,GRF3,GRF9,GRF1,GRF12,SLR1,IDD2,GRF10,MIR396A,CYCB2;1,GRF7,CYCB2;2,GRF6,GRF5	OsGRF4, GRF4, GS2/OsGRF4, PT2, GLW2, GS2/GL2, LGS1, OsLGS1,OsGRF2,OsGRF8,OsGRF3,OsGRF9,OsGRF1,OsGRF12,slr1-1, slr1, slr, GAI, OsGAI, OsSLR1, Os SLR1, OsRGA1, OsGRAS-18, OsGRAS-18, GRAS-18, GRAS18, SLR-1,OsIDD2, ZOS1-04, OsZOS1-04,OsGRF10,miR396a, osa-miR396a, osa-MIR396aosa-miR396a-3p osa-miR396a-5p, OsmiR396a,cycB2;1 (=cycOs1), cycB2;1, cycOs1, CycB2;1, CycOs1, CYCB2-1, CYCOS1, CycB2-Os1, CYCB2, CycB2;os;1, Orysa;CycB2;1, CycB2;os;1, OsCycB2;1,OsGRF7,cycB2;2 (=cycOs2), cycB2;2, cycOs2, CycB2;2, CycOs2, CYCB2-2, CYCOS2, CycB2-Os2, CYCB2, CycB2;os;2, OsCycB2;2, Orysa;CycB2;2, OsCYCOS2, Os;cycB2;2, CYCB2.2, OsCYCB2.2,OsGRF6,OsGRF5
47839	31900582	Kashihara K., Onohata T., Yariuchi R., Tanaka S., Akimitsu K., Gomi K.	The overexpression of OsSRO1a, which encodes an OsNINJA1- and OsMYC2-interacting protein, negatively affects OsMYC2-mediated jasmonate signaling in rice.	Plant Cell Rep.	39(4)	489-500	2020		
47840	32269578	Chakraborty K., Mondal S., Ray S., Samal P., Pradhan B., Chattopadhyay K., Kar M.K., Swain P., Sarkar R.K.	Tissue Tolerance Coupled With Ionic Discrimination Can Potentially Minimize the Energy Cost of Salinity Tolerance in Rice.	Front Plant Sci	11	265	2020	OVP2,SKC1,HKT3,NHX1,SOS3,HAK5,SOS2,HKT1,_,ROK,AHA1,LMPA,SOS1,AKT1	OsOVP2,OsHKT8, HKT8, Os-HKT1;5, OsHKT1;5, HKT1;5, SKC1, qSKC-1(t), OsSKC1,OsHKT3, OsHKT2;3, HKT2;3,OsNHX1, OcNHX1, OgNHX1, OrNHX1, OpNHX1, ObNHX1,CBL4, OsCBL4, OsSOS3,OsHAK5, FCO13, OsFCO13,CIPK24, OsCIPK24, OsSOS2, OsSnRK3.22, SnRK3.22,OsHKT1, OsHKT2;1, HKT2;1, Ni (Nipponbare)-OsHKT1, Po (Pokkali)-HKT1, OsHKT1;1, HKT1;1,,OsROK,OSA1, OsA1, osAHA1, AHA1,OSA7, OsA7, osAHA7, AHA7, PAA-Hwa, OsLMPA,OsSOS1, OsNHA1, NHA1, SOS1/NHX7, NHX7, OsNHX7,OsAKT1, Os-AKT1
47841	32211001	Wang J., Gao X., Dong J., Tian X., Wang J., Palta J.A., Xu S., Fang Y., Wang Z.	Over-Expression of the Heat-Responsive Wheat Gene <i>TaHSP23.9</i> in Transgenic <i>Arabidopsis</i> Conferred Tolerance to Heat and Salt Stress.	Front Plant Sci	11	243	2020		
47842	31902054	Bajsa-Hirschel J., Pan Z., Duke S.O.	Rice momilactone gene cluster: transcriptional response to barnyard grass (Echinochloa crus-galli).	Mol. Biol. Rep.	47(2)	1507-1512	2020		
47843	32194594	Lambin J., Demirel Asci S., Dubiel M., Tsaneva M., Verbeke I., Wytynck P., De Zaeytijd J., Smagghe G., Subramanyam K., Van Damme EJM.	OsEUL Lectin Gene Expression in Rice: Stress Regulation, Subcellular Localization and Tissue Specificity.	Front Plant Sci	11	185	2020	EULS2,EULD2,EULS3,EULD1B,EULD1A	OsEULS2, OrysaEULS2, OSR40 g3, OSR40g3, R40g3,OsEULD2, EULD2, OrysaEULD2, OSR40c2, R40c2,OsEULS3, OrysaEULS3, r40c1, Osr40c1,OsEULD1b, EULD1b, Osr40c1, r40c1, OSR40c1, OrysaEULD1B,OsEULD1a, EULD1a, OrysaEULD1A, OSR40 g2, OSR40g2, R40g2
47844	32117391	Serna L.	The Role of Grass <i>MUTE</i> Orthologues During Stomatal Development.	Front Plant Sci	11	55	2020	BHLH51,BHLH55,ICE2,BHLH2	OsbHLH051, bHLH051, bHLH51, OsFAMA, FAMA,OsbHLH055, bHLH055, bHLH55, OsMUTE, MUTE,OsbHLH001, bHLH001, OsbHLH1, bHLH1, OsICE2,OsbHLH002, bHLH002, OsbHLH2, bHLH2, OsICE1, ICE1, OsbHLH002/OsICE1
47845	31587067	Chang Z., Xu C., Huang X., Yan W., Qiu S., Yuan S., Ni H., Chen S., Xie G., Chen Z., Wu J., Tang X.	The plant-specific ABERRANT GAMETOGENESIS 1 gene is essential for meiosis in rice.	J. Exp. Bot.	71(1)	204-218	2020	ZIP4,AGG1,MSH5,HEI10	OsZIP4, SPO22, OsSPO22,OsHEIP1, HEIP1, OsAGG1, OsAGG1.1, OsAGG1.2,OsMSH5,HEI10A, HEI10B, OsHEI10,  OsRING434, RING434
47846	31974493	Ali Z., Shami A., Sedeek K., Kamel R., Alhabsi A., Tehseen M., Hassan N., Butt H., Kababji A., Hamdan S.M., Mahfouz M.M.	Fusion of the Cas9 endonuclease and the VirD2 relaxase facilitates homology-directed repair for precise genome engineering in rice.	Commun Biol	3(1)	44	2020		
47847	31965735	Wang M., Yan W., Peng X., Chen Z., Xu C., Wu J., Deng X.W., Tang X.	Identification of late-stage pollen-specific promoters for construction of pollen-inactivation system in rice.	J Integr Plant Biol			2020		
47848	31991936	Gao Q., Li G., Sun H., Xu M., Wang H., Ji J., Wang D., Yuan C., Zhao X.	Targeted Mutagenesis of the Rice <i>FW 2.2</i>-Like Gene Family Using the CRISPR/Cas9 System Reveals OsFWL4 as a Regulator of tiller number and Plant Yield in Rice.	Int J Mol Sci	21(3)		2020	FWL4,TGW2	OsFWL4, OsFWL8, FWL8,OsFWL1, FWL1, OsTGW2, OsCNR1, CNR1, OsPCR3, PCR3, OsFWL3, FWL3
47849	31671177	Lee S.K., Kim H., Cho J.I., Nguyen C.D., Moon S., Park J.E., Park H.R., Huh J.H., Jung K.H., Guiderdoni E., Jeon J.S.	Deficiency of rice hexokinase HXK5 impairs synthesis and utilization of starch in pollen grains and causes male sterility.	J. Exp. Bot.	71(1)	116-125	2020	HXK5	OsHXK5
47850	32015947	Dolui A.K., Latha M., Vijayaraj P.	OsPLB gene expressed during seed germination encodes a phospholipase in rice.	3 Biotech	10(1)	30	2020	PLB	OsPLB
47851	32071222	Lin Z., Qin P., Zhang X., Fu C., Deng H., Fu X., Huang Z., Jiang S., Li C., Tang X., Wang X., He G., Yang Y., He H., Deng X.W.	Divergent selection and genetic introgression shape the genome landscape of heterosis in hybrid rice.	Proc. Natl. Acad. Sci. U.S.A.	117(9)	4623-4631	2020		
47852	32051590	Groen S.C., ?ali? I., Joly-Lopez Z., Platts A.E., Choi J.Y., Natividad M., Dorph K., Mauck W.M., Bracken B., Cabral C.L.U., Kumar A., Torres R.O., Satija R., Vergara G., Henry A., Franks S.J., Purugganan M.D.	The strength and pattern of natural selection on gene expression in rice.	Nature	578(7796)	572-576	2020		
47853	32036187	Murphy K.M., Zerbe P.	Specialized diterpenoid metabolism in monocot crops: Biosynthesis and chemical diversity.	Phytochemistry	172	112289	2020	CPS4,MAS,SDR110C-MS3 ,CYP71Z7,SDR110C-MI3 ,KSL11,CPS2,CYP99A3,KO4,KSL10,KS7,KS1,D35,SDR110C-MS2,KS4,KS5,CPS1,KS8,CYP76M7	OsCPS4, CYC1, OsCYC1, OsCyc1, cpsl3, OsCPSL3, OsCPSsyn, OsCyc1/OsCPS4, OsTPS15, Os-CPS4, TPS11, OsTPS11,OsMAS, MAS1, OsMAS1, OsMAS/SDR110C-MS1, SDR110C-MS1, OsSDR110C-MS1, OsMS1, MS1,OsSDR110C-MS3,Oscyp71Z7, OsCYP71Z6, CYP71Z6,OsSDR110C-MI3,OsKSL11, KS11, OsKS11,OsCPS2, cps2, OsCPS2ent, CYC2, OsCyc2, OsCYC2, OsCPSL1, cpsl1, OsCyc2/OsCPS2, OsTPS7, Os-CPS2, TPS13, OsTPS13,OsCYP99A3,OsKO4, OsKOL4, KOS1, CYP701A8, OsCYP701A8, OsKO2, CYP701A8/OsKOL4,OsKSL10, KS10, OsKS10, OsTPS33, TPS33, TPS21, OsTPS21,OsKS7, KS7, KSL7, OsKSL7, DTC1, OsDTC1, OsKS3, OsDTC1/OsKS7, OsTPS6, TPS6, TPS38, OsTPS38,OsKS1, KS1, KS1A, KSL1, OsKSL1, OsKS1A, OsKS1B, OsKS1C, Ks1, Os KS1, OsTPS26, TPS6, OsTPS6,d35, d35(t), dwf30, OsKOL2, KOL2, KO2, OsKO2, OSKO2, KO, CYP701A, CYP701A6, Os KO2, OsKOL2/CYP701A,OsSDR110C-MS2, OsMAS1, MAS1, OsMS2, MS2, MAS2,OsKS4, KS4, KSL4, OsKSL4, DTS2, OsDTS2, OsTPS16, TPS16, TPS8, OsTPS8,OsKS5, KS5, KSL5, OsKSL5, KSL5i, OsKSL5i, KSL5j, OsKSL5j, KS6, OsKS6, OsTPS8, TPS45, OsTPS45,OsCPS1, OsCPS1ent, OsCPS, Os CPS1, OsTPS4, TPS4, TPS29, OsTPS29, OsCPS1-L, OsCPS1-S,OsKS8, KS8, KSL8, OsKSL8, DTC2, OsDTC2, OsDTC2/OsKS8, OsTPS32, TPS17, OsTPS17, KSL11, OsKSL11,OsCYP76M7, CYP76M10, OsCYP76M10, OsCYP76-4, CYP76-4
47854	32024752	Ke Y., Yuan M., Liu H., Hui S., Qin X., Chen J., Zhang Q., Li X., Xiao J., Zhang Q., Wang S.	The versatile functions of OsALDH2B1 provide a genic basis for growth-defense trade-offs in rice.	Proc. Natl. Acad. Sci. U.S.A.	117(7)	3867-3873	2020	PR1A,AOS2,BZR1,BRD1,TIFY10C, LIC,DWARF4,ALDH2B1  ,D11,LK3	OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1, OsPR1b, PR1alpha, OsPR1alpha,OsAOS2, CYP74A2, OsAOS, OsAOS1,OsBZR1, Os BZR1, OsBES1-6, BES1-6,brd1, OsDWARF, DWARF, OsBR6ox, BR6ox, CYP85A1, CYP85A4, OsDWF, CYP85A1/OsDWARF, OsBRD1, OsCYP85A1,OsJAZ7, JAZ7, OsJAZ 8, OsJAZ8, Os-JAZ8, JAZ8, OsTIFY10c, OsTIFY10c/OsJAZ8,OsC3H46, C3H46, OsLIC, OsFLA6, FLA6,OsDWARF4, osdwarf4, OsDWF4, DWF4, CYP90B2, OsCYP90B2, D4, OsD4,OsALDH2B1, OsALDH2b, ALDH2b,d11(d8), dwf10, d8, D11/CYP724B1, d11, CYP724B1, GNS4, OsD11, PMM1, OsPMM1, PMM1/D11, NBG4, OsCPB1, CPB1, CPB1/D11,lk3(t), lk3(t)*, SG3, GS3, SG3-GS3, OsGW3, OsGS3, RGG3/GS3/Mi/OsGGC1, RGG3, Mi, OsGGC1, GGC1, OsSYL3, SYL3, TT2, OsTT2
47855	32053407	Liang Y., Yan C., Qin X., Nan W., Zhang H.	Construction of three half-sib SSR linkage maps derived from overwintering cultivated rice and segregation distortion loci mapping.	Genome	63(4)	239-251	2020		
47856	32079595	Kusmartsev V., Dro?d? M., Schuster-B?ckler B., Warnecke T.	Cytosine Methylation Affects the Mutability of Neighboring Nucleotides in Germline and Soma.	Genetics	214(4)	809-823	2020		
47857	32029600	Wu K., Wang S., Song W., Zhang J., Wang Y., Liu Q., Yu J., Ye Y., Li S., Chen J., Zhao Y., Wang J., Wu X., Wang M., Zhang Y., Liu B., Wu Y., Harberd N.P., Fu X.	Enhanced sustainable green revolution yield via nitrogen-responsive chromatin modulation in rice.	Science	367(6478)		2020	NGR5	ERF142, OsERF#142, OsERF142, AP2/EREBP#049, AP2/EREBP49, SMOS1, OsSMOS1, SHB, OsAP2-EREBP-049, RLA1, RLA1/SMOS1, OsERF142/SMOS1, OsNGR5, GR5, OsGR5
47858	32024833	Lyu J., Huang L., Zhang S., Zhang Y., He W., Zeng P., Zeng Y., Huang G., Zhang J., Ning M., Bao Y., Zhao S., Fu Q., Wade L.J., Chen H., Wang W., Hu F.	Neo-functionalization of a Teosinte branched 1 homologue mediates adaptations of upland rice.	Nat Commun	11(1)	725	2020	MADS57,FC1,D14,REP1	OsMADS57, MADS-57,fc1, OsTB1, tb1, OsTB1/FC1, Os TB1, TB1, OsFC1, MP3, OsMP3,d14(d10), dwf13, d10, d14, D88, HTD2, OsHTD2, OsD14, qPPB3, D88/D14, HTD4,OsTCP24, REP1, TCP24, SDP1, SDP1/REP1, OsTb2, Tb2 
47859	32012429	He Y., Zhao J., Yang B., Sun S., Peng L., Wang Z.	Indole-3-acetate beta-glucosyltransferase OsIAGLU regulates seed vigour through mediating crosstalk between auxin and abscisic acid in rice.	Plant Biotechnol. J.			2020	ABI5,ARF8,VP1,ARF16,UGT75F2,TRAB1,BZIP23,ARF10,BZIP46	OsABI5, OsbZIP10, OsABF1, OREB1, OsABI5-1, OsABI5-2, OsOREB1, OREB1 ,OsARF8,Vp1* (OSVP1), OsVP1, OsVp1, Vp1, ABI3, OsABI3, OsLFL4, OsVp-1, OSVP1,OsARF16, OsARF2, OsARF1,OsIAGLU, IAGLU, OsUGT75F2, OsUGT75A, UGT75A,OsbZIP66, OsABF5, Osbzip66, OsTRAB1, bZIP66, ABF5,OsbZIP23, OsAREB1, OsABF2, Osbzip23, OsAREB2, OsZIP23, ZIP23,OsARF10,ABL1, bZIP46, OsABL1, OsbZIP46, OsAREB8, OsABF2, ABF2, OsABF3, ABF3, OsbZIP46CA1, OsZIP46, ZIP46, OsbZIP46/OsABF2
47860	31953871	Umnajkitikorn K., Sade N., Rubio Wilhelmi MDM., Gilbert M.E., Blumwald E.	Silencing of OsCV (chloroplast vesiculation) maintained photorespiration and N assimilation in rice plants grown under elevated CO2.	Plant Cell Environ.	43(4)	920-933	2020		
47861	32024696	Kusano M., Fukushima A., Tabuchi-Kobayashi M., Funayama K., Kojima S., Maruyama K., Yamamoto Y.Y., Nishizawa T., Kobayashi M., Wakazaki M., Sato M., Toyooka K., Osanai-Kondo K., Utsumi Y., Seki M., Fukai C., Saito K., Yamaya T.	Cytosolic GLUTAMINE SYNTHETASE1;1 Modulates Metabolism and Chloroplast Development in Roots.	Plant Physiol.	182(4)	1894-1909	2020	PSAN,HEMA,GLN1;2,SIG3,SIG6,CAB1R,SIG2B,_,LHCB2.1,YGL13,GLN1;1,_	psaN, OspsaN, PN, OsPN,HEMA1, OsHEMA, GluTR, OsHEMA1, hemA,OsGLN1;2, GSr, RGS8, OsGS1;2, GS1;2, GS1, OsGS1-2, GS1-2, OsGS1.2, GS1.2,OsSIG3,OsSIG6, OsSig6,cab1R, LHCP, CAB, OsLhcb1, Lhcb1, Cab1, OsCAB1, Lhcb1b, OsLhcb1b, CAB2R,OsSIG2B,FNR, PetH, OsFNR,LHCB, LHCP II, Lhcb2, OsLhcb2, Lhcb2.1, OsLhcb2.1 ,OsSIG1, SIG1, Os-SigA, OsSigA, Os Sig1, SIGA,OsGLN1;1, GS1, RGS28, OsGS1;1, GS1;1, OsGS, GS1, OsGS1, GLN1-1, OsGS1-1, GS1-1, GS1.1, OsGS1.1,FBPase, OsFBPase, OsSBPase, SBPase
47862	32052256	Naramoto S., Hata Y., Kyozuka J.	The origin and evolution of the ALOG proteins, members of a plant-specific transcription factor family, in land plants.	J. Plant Res.	133(3)	323-329	2020		
47863	32050518	Liu G., Zha Z., Cai H., Qin D., Jia H., Liu C., Qiu D., Zhang Z., Wan Z., Yang Y., Wan B., You A., Jiao C.	Dynamic Transcriptome Analysis of Anther Response to Heat Stress during Anthesis in Thermotolerant Rice (<i>Oryza sativa</i> L.).	Int J Mol Sci	21(3)		2020	HSP24.1,HSP70,STI1B,HSP16.9A,HSP17.3,HSP18.0-CII,HSP18.0-CIII,FKBP62B,HSP26,_,_,HSP17.7,LEA3-1,HSP21.9,HSP90.1,BHT,HSP18.0,BAG6,HSP22A,_,ACT	OsHsp24.1, OsHSP24.1,OsHSP70, OsEnS-45, EnS-45,OsHop/Sti1b, Hop/Sti1b, Sti1b,Oshsp16.9A, OsHsp16.9A, HSP16.9A, OsHSP16.9A-CI,OsHsp17.3, OsHSP17.3, Oshsp17.3 ,OsHSP18.0-CII, Oshsp18.0-CII, OsHSP18.0, OsHSP18.2,OsHSP18.0-CIII,OsFKBP62b, OsFKBP65, FKBP62b, FKBP65,OsHSP26, Oshsp26, OsHSP26.7, HSP26.7,,,OsHsp17.7, OsHSP17.4-CI, OsHSP17.7, Oshsp17.7,OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3, OsLEA3A, LEA3A,hsp20, OsHSP21.9 ,Hsp90, OsHSP90.1,OsBHT, OsHsp20L, Hsp20L,OsHSP18.0-CI, HSP18.0-CI, OsHsp18.0, OsHSP18.0, Oshsp18.0, OsSHSP1, SHSP1, OsMSR3, MSR3, OsHSP20, HSP20, OsHSP18.6, HSP18.6,OsBAG6,hsp20, HSP22a, OsHSP22a, HSP23.2, OsHSP23.2,,OsACT
47864	32111928	Gao D., Sun W., Wang D., Dong H., Zhang R., Yu S.	A xylan glucuronosyltransferase gene exhibits pleiotropic effects on cellular composition and leaf development in rice.	Sci Rep	10(1)	3726	2020	PHD1,IRX14,CESA2,CESA8,CESA1,CESA3,_,CESA5,CESA6,PGSIP-A1	OsPHD1,  LM212-1,OsIRX14, OsGT43J, GT43J, OsGT43J/OsIRX14,OsCesA2, OsCESA2, OS_CESA02,OsCesA8, OsCESA8, OS_CESA08, CesA8,OsCesA1, OsCesA-1, OsCESA1, OS_CESA01, CesA1,OsCesA3, OsCESA3, OS_CESA03,OsGT43G, GT43G, OsIRX9L, IRX9L,OsCesA5, OsCESA5, OS_CESA05,OsCesA6, OsCESA6, OS_CESA06,OsPGSIP-A1, OsGUX1, GUX1, OsGUX1L
47865	32054780	Zhao H., Guo M., Yan M., Cheng H., Liu Y., She Z., Lai L., Shi C., Zhang M., Li Y., Lin D., Qin Y.	Comparative Expression Profiling Reveals Genes Involved in Megasporogenesis.	Plant Physiol.	182(4)	2006-2024	2020	_,DEFL53,THI22,BOR3,SDP2,THI23,RLCK85,_,SUB53	OsMYB1, MYB1,OsDEFL53,OsTHI22, OsTHION22, THION22,OsBOR3,OsSDP2,OsTHI23, OsTHION23, THION23,OsRLCK85, OsER2, ER2,OsMYB3, MYB3,OsSub53
47866	32087369	Zhang C., Wei Y., Xu L., Wu K.C., Yang L., Shi C.N., Yang G.Y., Chen D., Yu F.F., Xie Q., Ding S.W., Wu J.G.	A Bunyavirus-Inducible Ubiquitin Ligase Targets RNA polymerase IV for Degradation during Viral Pathogenesis in Rice.	Mol Plant			2020	PUB45,NRPD1A,NRPD1B	OsPUB45, P3IP1, OsP3IP1,  OsPUB45/P3IP1, PUB45/P3IP1,OsNRPD1a,OsNRPD1b
47867	32102218	Wang H., Shi Y., Zhang X., Xu X., Wu J.L.	Characterization of a Novel Rice Dynamic Narrow-rolled leaf Mutant with Deficiencies in Aromatic Amino Acids.	Int J Mol Sci	21(4)		2020	YGL10,RPOTP,NAL1,FGL,PSBA,PSAA,HEMA,SPP,PORA,LYL1,ND1,PPR1,COW1,YL1,CAO2,YGL1,DNRL1,YGL98,TDD1,RPOA	CAO, OsCAO, CAO1, OsCAO1, Oslls1, Lls1, DVR, PGL,OsRpo Tp, OsRpoTp, NEP, RpoTp, rpoTP2,nal1, cul1, GPS, SPIKE, SPIKE/LSCHL4/NAL1/GPS, SPIKE/NAL1, LSCHL4, OsNAL1,fgl(fl), fl, fgl, OsFGL, OsPorB, PoPA, PORA, porA, OsPORA, PORB, OsPORB,PsbA, psbA, OsPsbA, PSBD1, OsPSBD1, psbD1,PsaA, psaA, PsAA1, psaA1,HEMA1, OsHEMA, GluTR, OsHEMA1, hemA,OsSPP,OsPorA, OsPORA,OsChl P, CHL P, ChlP, OsGGRI, GGRI, OsGGR, GGR, OsGGR1, GGR1, OsGGR1/LYL1/OsChl P,CSLD4, OsCSLD4, OsCD1, CD1, DNL3, OsDNL3, NRL1, OsNRL1, SPO1, OsSPO1, SPO1/OsCSLD4,OsPPR1, rPPR1,OsCOW1, oscow1, OsYUC8, YUC8, NAL7, OsNAL7, OsYUCCA8, YUCCA8, FMO, OsFMO(t), REIN7, YUC8/REIN7,MTC, OsMTC, YGL8, OsYGL8, OsCRD1, CRD1, OsCRD, CRD, YL-1, PNZIP, OsPNZIP,OsCAO2, OsCAO, CAO,OsYGL1, CHLG, Ygl1, CS, OsCHLG,OsDAHP1, DAHP1, DAHPS, OsDAHPS2, DAHPS2, OsDNRL1,OsChlD, ChlD, CHLD, OsCHLD, Ygl7, YGL3, OsvWA12, vWA12,OsTDD1, ASB1, OASB1, OsASbeta1, ASbeta1, TDD1/OASB1,rope, rpoalpha, Rpoalpha, rope, RpoA 
47868	32075298	Luo B., Xu M., Zhao L., Xie P., Chen Y., Harwood W., Xu G., Fan X., Miller A.J.	Overexpression of the High-Affinity Nitrate Transporter <i>OsNRT2.3b</i> Driven by Different Promoters in Barley Improves Yield and Nutrient Uptake Balance.	Int J Mol Sci	21(4)		2020	HTNE	NRT2.3, OsNRT2.3, OsNRT2;1, OsNRT2.3a, OsNRT2.3b, OsNRT2;3a, OsNRT2.5 
47869	32064504	Sun L., Di D.W., Li G., Kronzucker H.J., Wu X., Shi W.	Endogenous ABA Alleviates Rice Ammonium Toxicity by Reducing ROS and Free Ammonium via Regulation of the SAPK9-bZIP20 Pathway.	J. Exp. Bot.			2020	RITA1,PHS3,SAPK9,ABA8OX3	OsbZIP20, bZIP20, RITA-1, RISBZ3,OsCRTISO, MHZ5, MHZ5/CRTISO, CRTISO,OsSAPK9, OsSnRK2.9, SnRK2.9,OsABA8OX3, OsABA8ox3, CYP707A7, OsCYP707A7, OsAba-ox3, OsABA8ox3, OsABA8'ox3, ABA8'ox3, OsABAX3, ABAX3, OsABA8'OH3, ABA8'OH3
47870	32061119	Li Y., Li J., Chen Z., Wei Y., Qi Y., Wu C.	OsmiR167a-targeted auxin response factors modulate tiller angle via fine-tuning auxin distribution in rice.	Plant Biotechnol. J.			2020	LA1,ARF6B,WOX11,ARF17,HSFA2D,WOX6,MIR167A,ARF8	OsLa1,OsARF6b, OsARF25, ARF25,OsWOX11, Os WOX11, OsWOX12A,OsARF17,HSfA2d, OsHsfA2d, OsHsf-08, rHsf7, HSF08, OsHSF8, HSF8, HSF7, OsHSF7, OsHSFA2dI, OsHSFA2dII, OsHSFA2dIII, OsHsfA6b, HsfA6b, OsHsf2d, Hsf2d,OsWOX6, Os WOX6, OsWOX12B, WOX12B,miR167a, osa-miR167aosa-miR167a-3p osa-miR167a-5p, OsmiR167a,OsARF8, OsARF12, ARF12
47871	32093321	Liu X., Inoue H., Tang X., Tan Y., Xu X., Wang C., Jiang C.J.	Rice <i>OsAAA-ATPase1</i> is Induced during Blast Infection in a Salicylic Acid-Dependent Manner, and Promotes Blast Fungus Resistance.	Int J Mol Sci	21(4)		2020	_,_,_,_,_,_	,,,,,
47872	31990448	Bari M.A., Prity S.A., Das U., Akther M.S., Sajib S.A., Reza M.A., Kabir A.H.	Silicon induces phytochelatin and ROS scavengers facilitating cadmium detoxification in rice.	Plant Biol (Stuttg)	22(3)	472-479	2020		
47873	32074988	Jiang S., Yang C., Xu Q., Wang L., Yang X., Song X., Wang J., Zhang X., Li B., Li H., Li Z., Li W.	Genetic Dissection of Germinability under Low Temperature by Building a Resequencing Linkage Map in <i>japonica</i> Rice.	Int J Mol Sci	21(4)		2020	_	CHR723, OsCHR723
47874	32067160	Wahab M.M.S., Akkareddy S., Shanthi P., Latha P.	Identification of differentially expressed genes under heat stress conditions in rice (Oryza sativa L.).	Mol. Biol. Rep.	47(3)	1935-1948	2020		
47875	32114250	Yang F., Wang T., Liu L.	pollen germination is impaired by disruption of a Shaker K+ channel OsAKT1.2 in rice.	J. Plant Physiol.	248	153140	2020		
47876	32086721	Bhutia K.L., Nongbri E.L., Gympad E., Rai M., Tyagi W.	In silico characterization, and expression analysis of rice golden 2-like (OsGLK) members in response to low phosphorous.	Mol. Biol. Rep.	47(4)	2529-2549	2020		
47877	32087371	Xu L., Yuan K., Yuan M., Meng X., Chen M., Wu J., Li J., Qi Y.	Regulation of Rice Tillering by RNA-Directed DNA Methylation at Miniature Inverted-Repeat Transposable Elements.	Mol Plant			2020	D14,MIR156D,MIR156J,NRPD1A,NRPD1B	d14(d10), dwf13, d10, d14, D88, HTD2, OsHTD2, OsD14, qPPB3, D88/D14, HTD4,miR156d, OsmiR156d, osmiR156d, osa-miR156d, osa-MIR156d,miR156j, OsmiR156j, osmiR156j, osa-miR156j, osa-MIR156josa-miR156j-3p osa-miR156j-5p,OsNRPD1a,OsNRPD1b
47878	32085638	Zhang Q., Shen L., Ren D., Hu J., Zhu L., Gao Z., Zhang G., Guo L., Zeng D., Qian Q.	Characterization of the CRM Gene Family and Elucidating the Function of OsCFM2 in Rice.	Biomolecules	10(2)		2020	_,PSAA,RPOTP,RBCL,NDHA,RPL2,CAF1,RPOA,RPOB,ATPF,RPS12,_,_,_,_,CAF2,PSBA,_,_,CFM3,_,_,CFM2,_,RPOC1,CRS1	,PsaA, psaA, PsAA1, psaA1,OsRpo Tp, OsRpoTp, NEP, RpoTp, rpoTP2,rbcL, rbcA, OsrbcL,ndhA,rpl2,OsCAF1,rope, rpoalpha, Rpoalpha, rope, RpoA ,rpoB, RpoB, Rpobeta,atpF, OsatpF,rps12,,,,,OsCAF2,PsbA, psbA, OsPsbA, PSBD1, OsPSBD1, psbD1,,,OsCFM3,,,OsCFM2,trnL(UAA), trnL, trnL-UAA,rpoC1, RPO beta', RPObeta', OsRPOC1,OsCRS1
47879	32028884	Liu A., Zhou Z., Yi Y., Chen G.	Transcriptome analysis reveals the roles of stem nodes in cadmium transport to rice grain.	BMC Genomics	21(1)	127	2020	HSP71.1,MIR1846A,MIR5493,MIR398B,_,ERF141,BZIP23,MRP1,_,PIP2;6,PIP2;4,MIR1846C,PIP2;2,PIP2A,_,PIP1;2,LHCA3,MIR1846B,PIP1A,HSFA2D,IRT1,MED37_1,LCD1,MIR408,HSFB2C,VIT1,MYB30,NRT1.5A,BZIP18,MIR528	OsHsp71.1, OsHSP71.1, OsMED37_3, MED37_3 ,miR1846a, osa-miR1846a, osa-MIR1846aosa-miR1846a-5p,miR5493, Osa-miR5493, OsmiR5493,miR398b, osa-miR398b, osa-MIR398b, OsmiR398b,OsAAE3, AAE3, OsOCS, OCS, 4CL,OsERF#141, OsERF141, AP2/EREBP#019, AP2/EREBP19,OsbZIP23, OsAREB1, OsABF2, Osbzip23, OsAREB2, OsZIP23, ZIP23,OsABCC1, ABCC1, OsABCC1-1, OsABCC1-2, OsMRP1,HSP20,OsPIP2;6, PIP2-6, OsPIP2-6, PIP2-5, OsPIP2-5,OsPIP2;4, PIP2.4, PIP2-4, OsPIP2-4,miR1846c, osa-miR1846c, osa-MIR1846c,OsPIP2;2, PIP2-2, OsPIP2-3,OsPIP2a, PIP2-1, PIP2a, PIP2.1, OsPIP2;1, PIP2;1, OsPIP2-1,SnRK1, OsSnRK1, OsSnRK3.9, SnRK3.9,OsPIP1;2, PIP1-2, OsPIP1-2,OsLhca3, Lhca3,miR1846b, osa-miR1846b, osa-MIR1846bosa-miR1846b-5p,OsPIP1a, OsPIP1;1, PIP1a, RWC-1, PIP1-1, RWC1, OsPIP1-1, PIP1;1, PIP1-5,HSfA2d, OsHsfA2d, OsHsf-08, rHsf7, HSF08, OsHSF8, HSF8, HSF7, OsHSF7, OsHSFA2dI, OsHSFA2dII, OsHSFA2dIII, OsHsfA6b, HsfA6b, OsHsf2d, Hsf2d,OsIRT1, ZIP10, OsZIP10, OsZIP12, ZIP12,OsMed37_1, Med37_1, OsHSP70, OsHSP70.1, HSP70.1,NRAMP5, OsNRAMP5, OsNramp5, OsLCD1,miR408, osa-MIR408osa-miR408 osa-miR408-3p osa-miR408-5p, OsMIR408 ,HSfB2c, OsHsfB2c, OsHsf-24, HSF24, OsHSF24 ,OsVIT2, OsVIT1, VIT2, ,OsMYB30, OsMYB5P, MYB5P, OsMYB13a, MYB13a, Os2R_MYB26, 2R_MYB26, OsMYB30C, MYB30C,OsNRT1.5A,OsbZIP18,miR528, Osa-miR528, OsmiR528, OsMIR528, osa-MIR528, miR528*, osa-miR528, osa-miR528-5p, MIR528-T1, MIR528-T2
47880	32112268	Zhang F., Guo H., Huang J., Yang C., Li Y., Wang X., Qu L., Liu X., Luo J.	A UV-B-responsive glycosyltransferase, OsUGT706C2, modulates flavonoid metabolism in rice.	Sci China Life Sci			2020	UGT706C2	OsUGT706C2
47881	31872463	Liu S., Fukumoto T., Gena P., Feng P., Sun Q., Li Q., Matsumoto T., Kaneko T., Zhang H., Zhang Y., Zhong S., Zeng W., Katsuhara M., Kitagawa Y., Wang A., Calamita G., Ding X.	Ectopic expression of a rice plasma membrane intrinsic protein (OsPIP1;3) promotes plant growth and water uptake.	Plant J.	102(4)	779-796	2020	PIP1;2,PIP1A,PIP1;3	OsPIP1;2, PIP1-2, OsPIP1-2,OsPIP1a, OsPIP1;1, PIP1a, RWC-1, PIP1-1, RWC1, OsPIP1-1, PIP1;1, PIP1-5,OsPIP1;3. PIP1.3, PIP1-3, RWC3, RWC-3, OsPIP1-3
47882	32046032	Liang J., He Y., Zhang Q., Wang W., Zhang Z.	Plasma Membrane Ca2+ Permeable Mechanosensitive Channel <i>Osdmt1</i> Is Involved in Regulation of Plant Architecture and Ion Homeostasis in Rice.	Int J Mol Sci	21(3)		2020	CPS4,D14,CML11,CML2,DMT1,KS7,D17,CML15,CML16	OsCPS4, CYC1, OsCYC1, OsCyc1, cpsl3, OsCPSL3, OsCPSsyn, OsCyc1/OsCPS4, OsTPS15, Os-CPS4, TPS11, OsTPS11,d14(d10), dwf13, d10, d14, D88, HTD2, OsHTD2, OsD14, qPPB3, D88/D14, HTD4,OsCML11,OsCML2,OsMCA1, MCA1, OsDMT1, OsDMT1/OsMCA1,OsKS7, KS7, KSL7, OsKSL7, DTC1, OsDTC1, OsKS3, OsDTC1/OsKS7, OsTPS6, TPS6, TPS38, OsTPS38,d17(t), dwf14, d17, htd1, OsCCD7, CCD7, D17/HTD1, HTD1, OsHTD1, OsD17,OsCML15,OsCML16
47883	31883119	Sun W., Xu X.H., Li Y., Xie L., He Y., Li W., Lu X., Sun H., Xie X.	OsmiR530 acts downstream of OsPIL15 to regulate grain yield in rice.	New Phytol.	226(3)	823-837	2020	PIL15,MIR530,PL3	OsPIL15, OsbHLH105, PIF3, OsPIF3,miR530, Osa-miR530, OsmiR530, osa-MIR530, osa-miR530 osa-miR530-3p, osa-miR530-5p,OsPL3
47884	31786753	Zeng R., Farooq M.U., Zhang G., Tang Z., Zheng T., Su Y., Hussain S., Liang Y., Ye X., Jia X., Zhu J.	Dissecting the Potential of Selenoproteins Extracted from Selenium-Enriched Rice on Physiological, Biochemical and Anti-Ageing Effects In Vivo.	Biol Trace Elem Res			2019		
47885	31689318	Vishwakarma G., Sanyal R.P., Saini A., Sahu P.K., Singh Patel RR., Sharma D., Tiwari R., Das B.K.	GLADS: A gel-less approach for detection of STMS markers in wheat and rice.	PLoS ONE	14(11)	e0224572	2019		
47886	31695089	Zhou W., Zhang J., Zou M., Liu X., Du X., Wang Q., Liu Y., Liu Y., Li J.	Feasibility of Using Rice Leaves Hyperspectral Data to Estimate CaCl2-extractable Concentrations of Heavy Metals in Agricultural Soil.	Sci Rep	9(1)	16084	2019		
47887	31850026	Qamar Z.U., Hameed A., Ashraf M., Rizwan M., Akhtar M.	Development and Molecular Characterization of Low Phytate Basmati Rice Through Induced Mutagenesis, Hybridization, Backcross, and Marker Assisted Breeding.	Front Plant Sci	10	1525	2019		
47888	31695138	Wairich A., de Oliveira BHN., Arend E.B., Duarte G.L., Ponte L.R., Sperotto R.A., Ricachenevsky F.K., Fett J.P.	The Combined Strategy for iron uptake is not exclusive to domesticated rice (Oryza sativa).	Sci Rep	9(1)	16144	2019		
47889	31771205	Yoo Y.H., Kim M., Chandran A.K.N., Hong W.J., Ahn H.R., Lee G.T., Kang S., Suh D., Kim J.O., Kim Y.J., Jung K.H.	Genome-Wide Transcriptome Analysis of Rice Seedlings after Seed Dressing with <i>Paenibacillus yonginensis</i> DCY84T and Silicon.	Int J Mol Sci	20(23)		2019		
47890	31703277	Raungrusmee S., Anal A.K.	Effects of Lintnerization, Autoclaving, and Freeze-Thaw Treatments on Resistant Starch Formation and Functional Properties of Pathumthani 80 Rice Starch.	Foods	8(11)		2019		
47891	31698708	Kanda Y., Nakagawa H., Nishizawa Y., Kamakura T., Mori M.	Broad-Spectrum disease resistance Conferred by the Overexpression of Rice RLCK BSR1 Results from an Enhanced Immune Response to Multiple MAMPs.	Int J Mol Sci	20(22)		2019		
47892	31731735	Ge L., Dou Y., Li M., Qu P., He Z., Liu Y., Xu Z., Chen J., Chen M., Ma Y.	SiMYB3 in Foxtail Millet (<i>Setaria italica</i>) Confers Tolerance to Low-Nitrogen Stress by Regulating Root Growth in Transgenic Plants.	Int J Mol Sci	20(22)		2019		
47893	31718538	Zhang P., Zhong K., Zhong Z., Tong H.	Mining candidate gene for rice aluminum tolerance through genome wide association study and transcriptomic analysis.	BMC Plant Biol.	19(1)	490	2019		
47894	31745579	Li Y., Mo Y., Li Z., Yang M., Tang L., Cheng L., Qiu Y.	Characterization and application of a gall midge resistance gene (Gm6) from Oryza sativa 'Kangwenqingzhan'.	Theor. Appl. Genet.	133(2)	579-591	2020		
47895	31760006	Krishnan V., Awana M., Samota M.K., Warwate S.I., Kulshreshtha A., Ray M., Bollinedi H., Singh A.K., Thandapilly S.J., Praveen S., Singh A.	Pullulanase activity: A novel indicator of inherent resistant starch in rice (Oryza sativa. L).	Int. J. Biol. Macromol.	152	1213-1223	2020		
47896	31596523	Ermakova M., Danila F.R., Furbank R.T., von Caemmerer S.	On the road to C4 rice: advances and perspectives.	Plant J.	101(4)	940-950	2020		
47897	32158121	Gautam A., Pandey A.K., Dubey R.S.	<i>Azadirachta indica</i> and <i>Ocimum sanctum</i> leaf extracts alleviate arsenic toxicity by reducing arsenic uptake and improving antioxidant system in rice seedlings.	Physiol Mol Biol Plants	26(1)	63-81	2020		
47898	31730480	Luo H., Du B., He L., Zheng A., Pan S., Tang X.	Foliar application of sodium selenate induces regulation in yield formation, grain quality characters and 2-acetyl-1-pyrroline biosynthesis in fragrant rice.	BMC Plant Biol.	19(1)	502	2019		
47899	31675987	Wang P., Gong R., Yang Y., Yu S.	GHD8 controls rice photoperiod sensitivity by forming a complex that interacts with Ghd7.	BMC Plant Biol.	19(1)	462	2019		
47900	31761594	Hamid Y., Tang L., Hussain B., Usman M., Gurajala H.K., Rashid M.S., He Z., Yang X.	Efficiency of lime, biochar, Fe containing biochar and composite amendments for Cd and Pb immobilization in a co-contaminated alluvial soil.	Environ. Pollut.	257	113609	2020		
47901	31824543	Sun H., Xu F., Guo X., Wu D., Zhang X., Lou M., Luo F., Zhao Q., Xu G., Zhang Y.	A Strigolactone Signal Inhibits Secondary lateral root Development in Rice.	Front Plant Sci	10	1527	2019		
47902	31833685	Hu S.W., Zhang X., Jing L.Q., Lai S.K., Wang Y.X., Zhu J.G., Wang Y.L., Yang L.X.	[Effects of elevated CO2 concentration on grain filling capacity and quality of rice grains located at different positions on a panicle.]	Ying Yong Sheng Tai Xue Bao	30(11)	3725-3734	2019		
47903	31775351	Zhang X., Zhou J., Huang N., Mo L., Lv M., Gao Y., Chen C., Yin S., Ju J., Dong G., Zhou Y., Yang Z., Li A., Wang Y., Huang J., Yao Y.	Transcriptomic and Co-Expression Network Profiling of shoot apical meristem Reveal Contrasting Response to Nitrogen Rate between <i>Indica</i> and <i>Japonica</i> Rice Subspecies.	Int J Mol Sci	20(23)		2019		
47904	31776807	Park S.G., Park H.S., Baek M.K., Jeong J.M., Cho Y.C., Lee G.M., Lee C.M., Suh J.P., Kim C.S., Kim S.M.	Improving the Glossiness of Cooked Rice, an Important Component of Visual Rice Grain Quality.	Rice (N Y)	12(1)	87	2019		
47905	31699405	Banerjee A., Samanta S., Roychoudhury A.	Spermine ameliorates prolonged fluoride toxicity in soil-grown rice seedlings by activating the antioxidant machinery and glyoxalase system.	Ecotoxicol. Environ. Saf.	189	109737	2020		
47906	31739073	Bisht N., Mishra S.K., Chauhan P.S.	Bacillus amyloliquefaciens inoculation alters physiology of rice (Oryza sativa L. var. IR-36) through modulating carbohydrate metabolism to mitigate stress induced by nutrient starvation.	Int. J. Biol. Macromol.	143	937-951	2020		
47907	31739570	Zhou S., Zheng W.J., Liu B.H., Zheng J.C., Dong F.S., Liu Z.F., Wen Z.Y., Yang F., Wang H.B., Xu Z.S., Zhao H., Liu Y.W.	Characterizing the Role of <i>TaWRKY13</i> in salt tolerance.	Int J Mol Sci	20(22)		2019		
47908	31698744	Zhang Y., Zhou J., Yang Y., Elgamal W.H., Xu P., Li J., El-Refaee YZ., Hao S., Tao D.	Two SNP Mutations Turned off Seed Shattering in Rice.	Plants (Basel)	8(11)		2019		
47909	31828081	Kanyange L., Kamau J., Ombori O., Ndayiragije A., Muthini M.	Genotyping for Blast (<i>Pyricularia oryzae</i>) Resistance Genes in F2 Population of Supa Aromatic Rice (<i>Oryza sativa</i> L.).	International Journal of Genomics	2019	5246820	2019		
47910	31729398	Jain P., Dubey H., Singh P.K., Solanke A.U., Singh A.K., Sharma T.R.	Deciphering signalling network in broad spectrum Near Isogenic Lines of rice resistant to Magnaporthe oryzae.	Sci Rep	9(1)	16939	2019		
47911	31749823	Shohan M.U.S., Sinha S., Nabila F.H., Dastidar S.G., Seraj Z.I.	HKT1;5 transporter Gene Expression and Association of Amino Acid Substitutions With Salt Tolerance Across Rice Genotypes.	Front Plant Sci	10	1420	2019		
47912	31714812	Sultana S., Paul S.C., Parveen S., Alam S., Rahman N., Jannat B., Hoque S., Rahman M.T., Karim M.M.	Isolation and identification of salt-tolerant plant-growth-promoting rhizobacteria and their application for rice cultivation under salt stress.	Can. J. Microbiol.	66(2)	144-160	2020		
47913	31803220	Gurunathan S., Ramadoss B.R., Mudili V., Siddaiah C., Kalagatur N.K., Bapu J.R.K., Mohan C.D., Alqarawi A.A., Hashem A., Abd Allah EF.	Single Nucleotide Polymorphisms in Starch Biosynthetic Genes Associated With Increased Resistant Starch Concentration in Rice Mutant.	Front Genet	10	946	2019		
47914	31713833	Wang H.L., Yang S.H., Lv M., Ding S.W., Li J.Y., Xu C.L., Xie H.	RNA-Seq revealed that infection with white tip nematodes could downregulate rice photosynthetic genes.	Funct. Integr. Genomics	20(3)	367-381	2020	_,WRKY62	OsLysM-RLK4, LysM-RLK4, OsRLK3,OsWRKY62, OsWRKY62.1, OsWRKY62.2, XB10, OsWRKY62-1, OsWRKY62-2
47915	31689303	Sarkar C., Saklani B.K., Singh P.K., Asthana R.K., Sharma T.R.	Variation in the LRR region of Pi54 protein alters its interaction with the AvrPi54 protein revealed by in silico analysis.	PLoS ONE	14(11)	e0224088	2019		
47916	31833686	Fan P.P., Feng F., Liu C., Sun W.J., Yu L.F., Ke H.N., Chen S.T., Hu Z.H.	[Effect of different levels of elevated CO2 concentration on leaf chlorophyll fluorescence cha-racteristics of Japonica rice].	Ying Yong Sheng Tai Xue Bao	30(11)	3735-3744	2019		
47917	31686256	Xiao W., Yang Q., Huang M., Guo T., Liu Y., Wang J., Yang G., Zhou J., Yang J., Zhu X., Chen Z., Wang H.	Improvement of rice blast resistance by developing monogenic lines, two-gene pyramids and three-gene pyramid through MAS.	Rice (N Y)	12(1)	78	2019		
47918	31700499	Liu Q., Su Y., Zhu Y., Peng K., Hong B., Wang R., Gaballah M., Xiao L.	Manipulating <i>osa-miR156f</i> Expression by <i>D18</i> Promoter to Regulate Plant Architecture and Yield Traits both in Seasonal and Ratooning Rice.	Biol Proced Online	21	21	2019		
47919	31739540	Sheteiwy M.S., Shao H., Qi W., Hamoud Y.A., Shaghaleh H., Khan N.U., Yang R., Tang B.	GABA-Alleviated Oxidative Injury Induced by Salinity, Osmotic Stress and their Combination by Regulating Cellular and Molecular Signals in Rice.	Int J Mol Sci	20(22)		2019		
47920	31806459	Long J., Zhou D., Li B., Zhou Y., Li Y., Lei M.	The effect of an antimony resistant bacterium on the iron plaque fraction and antimony uptake by rice seedlings.	Environ. Pollut.	258	113670	2020		
47921	31717686	Zhang D., Zhang N., Shen W., Li J.F.	Engineered Artificial MicroRNA Precursors Facilitate Cloning and Gene Silencing in Arabidopsis and Rice.	Int J Mol Sci	20(22)		2019		
47922	31824540	Verbeek R.E.M., Van Buyten E., Alam M.Z., De Vleesschauwer D., Van Bockhaven J., Asano T., Kikuchi S., Haeck A., Demeestere K., Gheysen G., H?fte M., Kyndt T.	Jasmonate-Induced Defense Mechanisms in the Belowground Antagonistic Interaction Between <i>Pythium arrhenomanes</i> and <i>Meloidogyne graminicola</i> in Rice.	Front Plant Sci	10	1515	2019		
47923	31694217	Rohila J.S., Edwards J.D., Tran G.D., Jackson A.K., McClung A.M.	Identification of Superior Alleles for Seedling Stage salt tolerance in the USDA Rice Mini-Core Collection.	Plants (Basel)	8(11)		2019		
47924	31726710	Nguyen C.D., Verdeprado H., Zita D., Sanada-Morimura S., Matsumura M., Virk P.S., Brar D.S., Horgan F.G., Yasui H., Fujita D.	The Development and Characterization of Near-Isogenic and Pyramided Lines Carrying Resistance Genes to Brown Planthopper with the Genetic Background of <i>Japonica</i> Rice (<i>Oryza sativa</i> L.).	Plants (Basel)	8(11)		2019		
47925	31504730	Zhao J., Yu N., Ju M., Fan B., Zhang Y., Zhu E., Zhang M., Zhang K.	ABC transporter OsABCG18 controls the shootward transport of cytokinins and grain yield in rice.	J. Exp. Bot.	70(21)	6277-6291	2019		
47926	31766361	Toutounji M.R., Butardo V.M., Zou W., Farahnaky A., Pallas L., Oli P., Blanchard C.L.	A High-Throughput In Vitro Assay for Screening Rice Starch Digestibility.	Foods	8(12)		2019		
47927	31721104	Park D., Choi I.Y., Kim N.S.	Detection of mPing mobilization in transgenic rice plants.	Genes Genomics	42(1)	47-54	2020		
47928	31988636	Liu Y., Zhang A., Wang F., Wang J., Bi J., Kong D., Zhang F., Luo L., Liu G., Yu X.	Development and validation of a PCR-based functional marker system for identifying the low amylose content-associated gene <i>Wx</i><i>          hp        </i> in rice.	Breed. Sci.	69(4)	702-706	2019		
47929	31748605	Martin A.F., Tobimatsu Y., Kusumi R., Matsumoto N., Miyamoto T., Lam P.Y., Yamamura M., Koshiba T., Sakamoto M., Umezawa T.	Altered lignocellulose chemical structure and molecular assembly in CINNAMYL ALCOHOL DEHYDROGENASE-deficient rice.	Sci Rep	9(1)	17153	2019		
47930	31757070	Kamal N.M., Alnor Gorafi YS., Abdelrahman M., Abdellatef E., Tsujimoto H.	stay-green Trait: A Prospective Approach for Yield Potential, and Drought and Heat Stress Adaptation in Globally Important Cereals.	Int J Mol Sci	20(23)		2019		
47931	31696207	Shahzad R., Bilal S., Imran M., Khan A.L., Alosaimi A.A., Al-Shwyeh HA., Almahasheer H., Rehman S., Lee I.J.	Amelioration of heavy metal stress by endophytic Bacillus amyloliquefaciens RWL-1 in rice by regulating metabolic changes: potential for bacterial bioremediation.	Biochem. J.	476(21)	3385-3400	2019		
47932	31736007	Gho Y.S., Kim S.J., Jung K.H.	Phenylalanine ammonia-lyase family is closely associated with response to phosphate deficiency in rice.	Genes Genomics	42(1)	67-76	2020		
47933	31752185	Mostofa M.G., Rahman M.M., Ansary M.M.U., Fujita M., Tran L.P.	Interactive Effects of Salicylic Acid and Nitric Oxide in Enhancing Rice Tolerance to Cadmium Stress.	Int J Mol Sci	20(22)		2019		
47934	31771294	Ma B., Wang J., Liu C., Hu J., Tan K., Zhao F., Yuan M., Zhang J., Gai Z.	Preventive Effects of Fluoro-Substituted Benzothiadiazole Derivatives and Chitosan Oligosaccharide against the Rice Seedling Blight Induced by <i>Fusarium oxysporum</i>.	Plants (Basel)	8(12)		2019		
47935	31494666	Sun C., Yang M., Li Y., Tian J., Zhang Y., Liang L., Liu Z., Chen K., Li Y., Lv K., Lian X.	Comprehensive analysis of variation of cadmium accumulation in rice and detection of a new weak allele of OsHMA3.	J. Exp. Bot.	70(21)	6389-6400	2019		
47936	31733605	Frukh A., Siddiqi T.O., Khan M.I.R., Ahmad A.	Modulation in growth, biochemical attributes and proteome profile of rice cultivars under salt stress.	Plant Physiol. Biochem.	146	55-70	2020		
47937	31787381	Wu Z., Jiang Q., Yan T., Zhang X., Xu S., Shi H., Deng T.H., Li F., Du Y., Du R., Hu C., Wang X., Wang F.	Ammonium nutrition mitigates cadmium toxicity in rice (Oryza sativa L.) through improving antioxidase system and the glutathione-ascorbate cycle efficiency.	Ecotoxicol. Environ. Saf.	189	110010	2020		
47938	31786704	Jung H., Jo S.H., Park H.J., Lee A., Kim H.S., Lee H.J., Cho H.S.	Golgi-localized cyclophilin 21 proteins negatively regulate ABA signalling via the peptidyl prolyl isomerase activity during early seedling development.	Plant Mol. Biol.	102(1-2)	19-38	2020		
47939	31730951	Ma Z., Jing P.	Stabilization of black rice anthocyanins by self-assembled silk fibroin nanofibrils: Morphology, spectroscopy and thermal protection.	Int. J. Biol. Macromol.	146	1030-1039	2020		
47940	31775618	Jain R., Jenkins J., Shu S., Chern M., Martin J.A., Copetti D., Duong P.Q., Pham N.T., Kudrna D.A., Talag J., Schackwitz W.S., Lipzen A.M., Dilworth D., Bauer D., Grimwood J., Nelson C.R., Xing F., Xie W., Barry K.W., Wing R.A., Schmutz J., Li G., Ronald P.C.	Genome sequence of the model rice variety KitaakeX.	BMC Genomics	20(1)	905	2019		
47941	31621135	Wang G., Li H., Wang K., Yang J., Duan M., Zhang J., Ye N.	Regulation of gene expression involved in the remobilization of rice straw carbon reserves results from moderate soil drying during grain filling.	Plant J.	101(3)	604-618	2020		
47942	31795099	Saito H., Okumoto Y., Tsukiyama T., Xu C., Teraishi M., Tanisaka T.	Allelic Differentiation at the <i>E1/Ghd7</i> Locus Has Allowed Expansion of Rice Cultivation Area.	Plants (Basel)	8(12)		2019		
47943	31787384	Das S., Singh V.K., Dwivedy A.K., Chaudhari A.K., Upadhyay N., Singh A., Deepika, Dubey N.K.	Fabrication, characterization and practical efficacy of Myristica fragrans essential oil nanoemulsion delivery system against postharvest biodeterioration.	Ecotoxicol. Environ. Saf.	189	110000	2020		
47944	31358515	Ferrero-Serrano ?., Cantos C., Assmann S.M.	The Role of Dwarfing Traits in Historical and Modern Agriculture with a Focus on Rice.	Cold Spring Harb Perspect Biol	11(11)		2019		
47945	31359043	Wang W.C., Lin T.C., Kieber J., Tsai Y.C.	Response Regulators 9 and 10 Negatively Regulate Salinity Tolerance in Rice.	Plant Cell Physiol.	60(11)	2549-2563	2019		
47946	31709495	Zhao Z., Zhang Z., Ding Z., Meng H., Shen R., Tang H., Liu Y.G., Chen L.	Public-transcriptome-database-assisted selection and validation of reliable reference genes for qRT-PCR in rice.	Sci China Life Sci	63(1)	92-101	2020		
47947	31752176	Setyaningsih W., Majchrzak T., Dymerski T., Namie?nik J., Palma M.	Key-Marker Volatile Compounds in Aromatic Rice (<i>Oryza sativa</i>) Grains: An HS-SPME Extraction Method Combined with GC~GC-TOFMS.	Molecules	24(22)		2019		
47948	31767692	Zhu S., Ye W., Ye L., Fu H., Ye C., Xiao X., Ji Y., Lin W., Ji G., Wu X.	PlantAPAdb: A Comprehensive Database for Alternative Polyadenylation Sites in Plants.	Plant Physiol.	182(1)	228-242	2020		
47949	31373371	Sano N., Takebayashi Y., To A., Mhiri C., Rajjou L.C., Nakagami H., Kanekatsu M.	Shotgun Proteomic Analysis Highlights the Roles of Long-Lived mRNAs and De Novo Transcribed mRNAs in Rice Seeds upon Imbibition.	Plant Cell Physiol.	60(11)	2584-2596	2019		
47950	31803533	Ermakov A., Bobrovskikh A., Zubairova U., Konstantinov D., Doroshkov A.	Stress-induced changes in the expression of antioxidant system genes for rice (<i>Oryza sativa</i> L.) and bread wheat (<i>Triticum aestivum</i> L.).	PeerJ	7	e7791	2019		
47951	31776817	Liu S., Liu G., Cheng P., Xue C., Zhou Y., Chen X., Ye L., Qiao Z., Zhang T., Gong Z.	Genome-wide Profiling of Histone Lysine Butyrylation Reveals its Role in the Positive Regulation of Gene Transcription in Rice.	Rice (N Y)	12(1)	86	2019		
47952	31781147	Dhatt B.K., Abshire N., Paul P., Hasanthika K., Sandhu J., Zhang Q., Obata T., Walia H.	Metabolic Dynamics of Developing Rice Seeds Under High Night-Time Temperature Stress.	Front Plant Sci	10	1443	2019		
47953	31775620	Chen T., Li G., Islam M.R., Fu W., Feng B., Tao L., Fu G.	Abscisic acid synergizes with sucrose to enhance grain yield and quality of rice by improving the source-sink relationship.	BMC Plant Biol.	19(1)	525	2019		
47954	31765708	Huang P.W., Yang Q., Zhu Y.L., Zhou J., Sun K., Mei Y.Z., Dai C.C.	The construction of CRISPR-Cas9 system for endophytic Phomopsis liquidambaris and its PmkkA-deficient mutant revealing the effect on rice.	Fungal Genet. Biol.	136	103301	2020		
47955	31618451	Zhang D., Yang H., Wang X., Qiu Y., Tian L., Qi X., Qu L.Q.	Cytochrome P450 family member CYP96B5 hydroxylates alkanes to primary alcohols and is involved in rice leaf cuticular wax synthesis.	New Phytol.	225(5)	2094-2107	2020		
47956	31752697	Xu W., Song W., Yang Y., Wu Y., Lv X., Yuan S., Liu Y., Yang J.	Multiplex nucleotide editing by high-fidelity Cas9 variants with improved efficiency in rice.	BMC Plant Biol.	19(1)	511	2019		
47957	31850019	Yang G., Luo W., Zhang J., Yan X., Du Y., Zhou L., Li W., Wang H., Chen Z., Guo T.	Genome-Wide Comparisons of Mutations Induced by Carbon-Ion Beam and Gamma-Rays Irradiation in Rice <i>via</i> Resequencing Multiple Mutants.	Front Plant Sci	10	1514	2019		
47958	31776387	Zhou Y., Zhang C.	Evolutionary patterns of chimeric retrogenes in Oryza species.	Sci Rep	9(1)	17733	2019		
47959	31763560	Wang X.Q., Kim K.W., Chu S.H., Phitaktansakul R., Park S.W., Chung I.M., Lee Y.S., Park Y.J.	Genome-Wide Association Study for Squalene Contents and Functional Haplotype Analysis in Rice.	ACS Omega	4(21)	19358-19365	2019		
47960	31679023	Saqib A., Scheller H.V., Fredslund F., Welner D.H.	Molecular characteristics of plant UDP-arabinopyranose mutases.	Glycobiology	29(12)	839-846	2019		
47961	31766429	Quan N.V., Thien D.D., Khanh T.D., Tran H.D., Xuan T.D.	Momilactones A, B, and Tricin in Rice Grain and By-Products are Potential Skin Aging Inhibitors.	Foods	8(12)		2019		
47962	31754813	Chen S.Y., Lai M.H., Tung C.W., Wu D.H., Chang F.Y., Lin T.C., Chung C.L.	Genome-wide association mapping of gene loci affecting disease resistance in the rice-Fusarium fujikuroi pathosystem.	Rice (N Y)	12(1)	85	2019		
47963	31703353	Badro H., Furtado A., Henry R.	Relationships between Iraqi Rice Varieties at the Nuclear and Plastid Genome Levels.	Plants (Basel)	8(11)		2019		
47964	31766434	Bhattarai U., Subudhi P.K.	Genetic Diversity, Population Structure, and Marker-Trait Association for drought tolerance in US Rice Germplasm.	Plants (Basel)	8(12)		2019		
47965	31715228	Wang H., Xiao N., Ding J., Zhang Y., Liu X., Zhang H.	Effect of germination temperature on hierarchical structures of starch from brown rice and their relation to pasting properties.	Int. J. Biol. Macromol.	147	965-972	2020		
47966	31703691	Chen X., Chen M., Lin G., Yang Y., Yu X., Wu Y., Xiong F.	Structural development and physicochemical properties of starch in caryopsis of super rice with different types of panicle.	BMC Plant Biol.	19(1)	482	2019		
47967	31696609	Zeng D., Li X., Huang J., Li Y., Cai S., Yu W., Li Y., Huang Y., Xie X., Gong Q., Tan J., Zheng Z., Guo M., Liu Y.G., Zhu Q.	Engineered Cas9 variant tools expand targeting scope of genome and base editing in rice.	Plant Biotechnol. J.	18(6)	1348-1350	2020		
47968	31730252	Li S., Zhang Y., Xia L., Qi Y.	CRISPR-Cas12a enables efficient biallelic gene targeting in rice.	Plant Biotechnol. J.	18(6)	1351-1353	2020		
47969	31697760	Chen J., Cao F., Shan S., Yin X., Huang M., Zou Y.	Grain filling of early-season rice cultivars grown under mechanical transplanting.	PLoS ONE	14(11)	e0224935	2019		
47970	31726733	Buti M., Baldoni E., Formentin E., Milc J., Frugis G., Lo Schiavo F., Genga A., Francia E.	A Meta-Analysis of Comparative Transcriptomic Data Reveals a Set of Key Genes Involved in the Tolerance to Abiotic Stresses in Rice.	Int J Mol Sci	20(22)		2019		
47971	31689922	Park J.R., Yang W.T., Kwon Y.S., Kim H.N., Kim K.M., Kim D.H.	Assessment of the Genetic Diversity of Rice Germplasms Characterized by Black-Purple and Red Pericarp Color Using Simple Sequence Repeat Markers.	Plants (Basel)	8(11)		2019		
47972	31892258	Zhang K., Liu X., Ma Y., Zhang R., Cao Q., Zhu Y., Cao W., Tian Y.	A Comparative Assessment of Measures of Leaf Nitrogen in Rice Using Two Leaf-Clip Meters.	Sensors (Basel)	20(1)		2019		
47973	31736145	Li H., Jiang S., Li C., Liu L., Lin Z., He H., Deng X.W., Zhang Z., Wang X.	The hybrid protein interactome contributes to rice heterosis as epistatic effects.	Plant J.	102(1)	116-128	2020		
47974	31836812	Hu X., Cui Y., Dong G., Feng A., Wang D., Zhao C., Zhang Y., Hu J., Zeng D., Guo L., Qian Q.	Using CRISPR-Cas9 to generate semi-dwarf rice lines in elite landraces.	Sci Rep	9(1)	19096	2019		
47975	31679162	Xu J., Lee Y.J., Liu B.	Establishment of a mitotic model system by transient expression of the D-type cyclin in differentiated leaf cells of tobacco (Nicotiana benthamiana).	New Phytol.	226(4)	1213-1220	2020		
47976	31931412	Dong Y., Gao M., Song Z., Qiu W.	Microplastic particles increase arsenic toxicity to rice seedlings.	Environ. Pollut.	259	113892	2020		
47977	31874272	Lin G., Yang Y., Chen X., Yu X., Wu Y., Xiong F.	Effects of high temperature during two growth stages on caryopsis development and physicochemical properties of starch in rice.	Int. J. Biol. Macromol.	145	301-310	2020		
47978	31857174	Li H., Gui Y., Li J., Zhu Y., Cui B., Guo L.	Modification of rice starch using a combination of autoclaving and triple enzyme treatment: Structural, physicochemical and digestibility properties.	Int. J. Biol. Macromol.	144	500-508	2020		
47979	31677306	He D., Li M., Damaris R.N., Bu C., Xue J., Yang P.	Quantitative ubiquitylomics approach for characterizing the dynamic change and extensive modulation of ubiquitylation in rice seed germination.	Plant J.	101(6)	1430-1447	2020		
47980	31818903	Paul P., Dhatt B.K., Miller M., Folsom J.J., Wang Z., Krassovskaya I., Liu K., Sandhu J., Yu H., Zhang C., Obata T., Staswick P., Walia H.	<i>MADS78</i> and <i>MADS79</i> Are Essential Regulators of Early Seed Development in Rice.	Plant Physiol.	182(2)	933-948	2020	HAP3K,DAO,MADS89,TAR1,AGPS2,FLO4,AGPL2,FIB,RISBZ1,MADS78,IAA19,ALK,IAA24,WX1,RPBF,MADS79,YUCCA12,FIE1,IAA10,BT1-1,RSUS3	OsHAP3K/OsNF-YB1, OsHAP3K, OsNF-YB1, NF-YB1, nf-yb1, OsLEC1, OsNF-YB-1, NFYB1, OsEnS-41,OsDAO,OsMADS89,OsTAR1, FBL,OsAGPS2a, AGPS2A, AGPS2B, OsAGPS2, osagps2, APS2, APS2a, APS2b, AGPS2a, APGS2b, OsAGPS2b, AGPP, GAS8, OsAPS2, OsAPS2a, OsAPS2b,FLO4-4, flo4, flo4-2, flo4-3, ppdk, OsPPDK, PPDK1, CPDK1, PPDKB, OsPPDKB, cyOsPPDKB, OsPBDK, PBDK, osppdkb, PPD, cyPPDK, chPPDKB, chOsPPDKB,OsAGPL2, osagpl2, APL2, OsAPL2, AGPiso, sh2, Sh2, GIF2, GAS1 ,fib, OsFIB, OsTAR2, TAR2, TSG1, OsTSG1, OsTAA1, TAA1,OsbZIP58, bZIP58, OsEnS-92, OsSMF1, SMF1, OsRISBZ1, RISBZ1/bZIP58,OsMADS78,OsIAA19,alk, SSII-3, OsSSIIa, OsSSII-3, SSIIa, SSS2A, OsSSIIaChr6, SS2a,OsIAA24,wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx,OsDof3, OsDOF3, OsEnS-34, OsDof10, Dof10, OsDof-10, OsDOF1, DOF1, DOF3, OsRPBF, OsDOF7,OsMADS79,OsYUCCA12, OsYUC12, YUC12,OsFIE1, OsWD40-154, OsEnS-116, OsFIE1/OsWD40-154, WD40-154 ,OsIAA10, OsIAA5, DLN71, OsDLN71,OsBT1-1, OsEnS-29, OsBT1, OsBt1, BT1, Bt1, OsBt1-1, shr3, OsBT1-2, BT1-2,RSus3(t), SUS3, SS3, OsScS3, RSs3, RSus3, OsSUS3, RSS3, OsEnS-111, Susy3, OsSusy3
47981	31817743	Sega P., Pacak A.	Plant PHR Transcription Factors: Put on A Map.	Genes (Basel)	10(12)		2019		
47982	31856232	Wu B., Wang B.	Comparative analysis of ascorbate peroxidases (APXs) from selected plants with a special focus on Oryza sativa employing public databases.	PLoS ONE	14(12)	e0226543	2019		
47983	31872316	Han H., Yang C., Zhu J., Zhang L., Bai Y., Li E., Gilbert R.G.	Competition between Granule Bound starch synthase and Starch Branching Enzyme in Starch Biosynthesis.	Rice (N Y)	12(1)	96	2019		
47984	31988621	Thein H.W., Yamagata Y., Van Mai T., Yasui H.	Four resistance alleles derived from <i>Oryza longistaminata</i> (A. Chev. & Roehrich) against green rice leafhopper, <i>Nephotettix cincticeps</i> (Uhler) identified using novel introgression lines.	Breed. Sci.	69(4)	573-584	2019		
47985	31861687	Li Q., Chen L., Yang A.	The Molecular Mechanisms Underlying Iron Deficiency Responses in Rice.	Int J Mol Sci	21(1)		2019		
47986	31892124	Cao J., Zhang M., Zhu M., He L., Xiao J., Li X., Yuan M.	Autophagy-Like Cell Death Regulates Hydrogen Peroxide and Calcium Ion Distribution in <i>Xa3/Xa26</i>-Mediated Resistance to <i>Xanthomonas oryzae</i> pv. <i>oryzae</i>.	Int J Mol Sci	21(1)		2019		
47987	31877655	Chen G., Hu J., Dong L., Zeng D., Guo L., Zhang G., Zhu L., Qian Q.	The Tolerance of Salinity in Rice Requires the Presence of a Functional Copy of FLN2.	Biomolecules	10(1)		2019		
47988	31802312	Jaiswal S., Gautam R.K., Singh R.K., Krishnamurthy S.L., Ali S., Sakthivel K., Iquebal M.A., Rai A., Kumar D.	Harmonizing technological advances in phenomics and genomics for enhanced salt tolerance in rice from a practical perspective.	Rice (N Y)	12(1)	89	2019		
47989	31847801	Liang Y., Su Y., Li L., Huang X., Panhwar F.H., Zheng T., Tang Z., Ei H.H., Farooq M.U., Zeng R., Zhang Y., Ye X., Jia X., Zheng L., Zhu J.	Quick selenium accumulation in the selenium-rich rice and its physiological responses in changing selenium environments.	BMC Plant Biol.	19(1)	559	2019		
47990	31838231	Adil M.F., Sehar S., Chen G., Chen Z.H., Jilani G., Chaudhry A.N., Shamsi I.H.	Cadmium-zinc cross-talk delineates toxicity tolerance in rice via differential genes expression and physiological / ultrastructural adjustments.	Ecotoxicol. Environ. Saf.	190	110076	2020		
47991	31881403	Kang Z., Zhang W., Qin J., Li S., Yang X., Wei X., Li H.	Yield advantage and cadmium decreasing of rice in intercropping with water spinach under moisture management.	Ecotoxicol. Environ. Saf.	190	110102	2020		
47992	31821678	Bi H., Fei Q., Li R., Liu B., Xia R., Char S.N., Meyers B.C., Yang B.	Disruption of miRNA sequences by TALENs and CRISPR/Cas9 induces varied lengths of miRNA production.	Plant Biotechnol. J.			2019		
47993	31862941	Zaw H., Raghavan C., Pocsedio A., Swamy B.P.M., Jubay M.L., Singh R.K., Bonifacio J., Mauleon R., Hernandez J.E., Mendioro M.S., Gregorio G.B., Leung H.	Exploring genetic architecture of grain yield and quality traits in a 16-way indica by japonica rice MAGIC global population.	Sci Rep	9(1)	19605	2019		
47994	31846460	Barik S.R., Pandit E., Pradhan S.K., Mohanty S.P., Mohapatra T.	Genetic mapping of morpho-physiological traits involved during reproductive stage drought tolerance in rice.	PLoS ONE	14(12)	e0214979	2019		
47995	31840193	Nada R.M., Abogadallah G.M.	Contrasting root traits and native regulation of aquaporin differentially determine the outcome of overexpressing a single aquaporin (OsPIP2;4) in two rice cultivars.	Protoplasma	257(2)	583-595	2020		
47996	31840466	Yang J., Cai Z., Liu D., Hu L.Y., Qu W.B., Zhang C.H., Wang S.M., Tian J.	[Effects of spraying salicylic acid and potassium dihydrogen phosphate on physiological cha-racteristics and grain yield of single-season rice under high temperature condition].	Ying Yong Sheng Tai Xue Bao	30(12)	4202-4210	2019		
47997	31837402	Li C., Tao R.F., Li Y., Duan M.H., Xu J.H.	Transcriptome analysis of the thermosensitive genic male-sterile line provides new insights into fertility alteration in rice (Oryza sativa).	Genomics	112(3)	2119-2129	2020		
47998	31841356	Nguyet N.T.M., Long H.H., Ngoc N.B., Nhai N.T., Thuy N.T.T., Hayashi N., Fukuta Y.	Diversity and Distribution of Rice Blast (<i>Pyricularia oryzae</i> Cavara) Races in Vietnam.	Plant Dis.	104(2)	381-387	2020		
47999	31795935	Raj G., Shadab M., Deka S., Das M., Baruah J., Bharali R., Talukdar N.C.	Seed interior microbiome of rice genotypes indigenous to three agroecosystems of Indo-Burma biodiversity hotspot.	BMC Genomics	20(1)	924	2019		
48000	31889986	Sandhu J., Zhu F., Paul P., Gao T., Dhatt B.K., Ge Y., Staswick P., Yu H., Walia H.	PI-Plat: a high-resolution image-based 3D reconstruction method to estimate growth dynamics of rice inflorescence traits.	Plant Methods	15	162	2019		
48001	31853646	Singh A., Banerjee A., Roychoudhury A.	Seed priming with calcium compounds abrogate fluoride-induced oxidative stress by upregulating defence pathways in an indica rice variety.	Protoplasma	257(3)	767-782	2020		
48002	31864929	Xu X., Han J., Pang J., Wang X., Lin Y., Wang Y., Qiu G.	Methylmercury and inorganic mercury in Chinese commercial rice: Implications for overestimated human exposure and health risk.	Environ. Pollut.	258	113706	2020		
48003	31905829	Ajadi A.A., Tong X., Wang H., Zhao J., Tang L., Li Z., Liu X., Shu Y., Li S., Wang S., Liu W., Tajo S.M., Zhang J., Wang Y.	Cyclin-dependent kinase Inhibitors KRP1 and KRP2 Are Involved in Grain Filling and Seed Germination in Rice (<i>Oryza sativa</i> L.).	Int J Mol Sci	21(1)		2019		
48004	31853874	Chu L.L., Pandey R.P., Dhakal D., Sohng J.K.	Increased Production of Dicinnamoylmethane Via Improving Cellular malonyl-CoA Level by Using a CRISPRi in Escherichia coli.	Appl. Biochem. Biotechnol.	190(1)	325-340	2020		
48005	31954202	Wang R., Cheng Y., Ke X., Zhang X., Zhang H., Huang J.	Comparative analysis of salt responsive gene regulatory networks in rice and Arabidopsis.	Comput Biol Chem	85	107188	2020		
48006	31861219	Tomita M., Tanisaka T.	The Gametic Non-Lethal Gene <i>Gal</i> on Chromosome 5 Is Indispensable for the Transmission of the Co-Induced Semidwarfing Gene <i>d60</i> in Rice.	Biology (Basel)	8(4)		2019		
48007	31819228	Zhang M., Liang X., Wang L., Cao Y., Song W., Shi J., Lai J., Jiang C.	A HAK family Na+ transporter confers natural variation of salt tolerance in maize.	Nat Plants	5(12)	1297-1308	2019		
48008	32083115	Kamarudin Z.S., Yusop M.R., Ismail M.R., Tengku Muda Mohamed M., Harun A.R., Yusuff O., Magaji U., Fatai A.	<i>LEA</i> Gene Expression Assessment in Advanced Mutant Rice Genotypes under Drought Stress.	International Journal of Genomics	2019	8406036	2019		
48009	31657369	Li X., Huang L., He Y., Xie C., Zhan F., Zu Y., Sheng J., Li Y.	Effects of enhanced UV-B radiation on the interaction between rice and Magnaporthe oryzae in Yuanyang terrace.	Photochem. Photobiol. Sci.	18(12)	2965-2976	2019		
48010	31915644	Lee H., Yoo B.	Rheological Characteristics of Waxy Rice Starch Modified by Carboxymethyl Cellulose.	Preventive Nutrition and Food Science	24(4)	478-484	2019		
48011	31853825	Gonz?lez-Schain N., Roig-Villanova I., Kater M.M.	Early cold stress responses in post-meiotic anthers from tolerant and sensitive rice cultivars.	Rice (N Y)	12(1)	94	2019		
48012	31857164	Yao T., Wen Y., Xu Z., Ma M., Li P., Brennan C., Sui Z., Corke H.	Octenylsuccinylation differentially modifies the physicochemical properties and digestibility of small granule starches.	Int. J. Biol. Macromol.	144	705-714	2020		
48013	31889942	Rana B.B., Kamimukai M., Bhattarai M., Koide Y., Murai M.	Responses of earliness and lateness genes for heading to different photoperiods, and specific response of a gene or a pair of genes to short day length in rice.	Hereditas	156	36	2019		
48014	31844998	Zhang D., Zhang M., Zhou Y., Wang Y., Shen J., Chen H., Zhang L., L? B., Liang G., Liang J.	The Rice G Protein gamma Subunit DEP1/qPE9-1 Positively Regulates Grain-Filling Process by Increasing Auxin and Cytokinin Content in Rice Grains.	Rice (N Y)	12(1)	91	2019		
48015	31819024	Akanksha S., Jhansi Lakshmi V., Singh A.K., Deepthi Y., Chirutkar P.M., Ramdeen, Balakrishnan D., Sarla N., Mangrauthia S.K., Ram T.	Genetics of novel brown planthopper <i>Nilaparvata lugens</i> (St?l) resistance genes in derived introgression lines from the interspecific cross <i>O. sativa</i> var. Swarna ~ <i>O. nivara</i>.	J. Genet.	98		2019		
48016	31889083	Pan J., Zhao J., Liu Y., Huang N., Tian K., Shah F., Liang K., Zhong X., Liu B.	Optimized nitrogen management enhances lodging resistance of rice and its morpho-anatomical, mechanical, and molecular mechanisms.	Sci Rep	9(1)	20274	2019		
48017	31878878	Zeng H., Zhang X., Ding M., Zhu Y.	Integrated analyses of miRNAome and transcriptome reveal zinc deficiency responses in rice seedlings.	BMC Plant Biol.	19(1)	585	2019		
48018	31890145	Zhang Y.W., Wen Y.J., Dunwell J.M., Zhang Y.M.	QTL.gCIMapping.GUI v2.0: An R software for detecting small-effect and linked QTLs for quantitative traits in bi-parental segregation populations.	Comput Struct Biotechnol J	18	59-65	2020		
48019	32158122	Tantray A.Y., Bashir S.S., Ahmad A.	Low nitrogen stress regulates chlorophyll fluorescence in coordination with photosynthesis and Rubisco efficiency of rice.	Physiol Mol Biol Plants	26(1)	83-94	2020		
48020	31857634	E Z., Chen C., Yang J., Tong H., Li T., Wang L., Chen H.	Genome-wide analysis of fatty acid desaturase genes in rice (Oryza sativa L.).	Sci Rep	9(1)	19445	2019		
48021	32015852	Han B., Ma X., Cui D., Wang Y., Geng L., Cao G., Zhang H., Koh H.J., Han L.	Analysis of evolutionary relationships provides new clues to the origins of weedy rice.	Ecol Evol	10(2)	891-900	2020		
48022	31853678	Zhang F., Zeng D., Zhang C.S., Lu J.L., Chen T.J., Xie J.P., Zhou Y.L.	Genome-Wide Association Analysis of the Genetic Basis for Sheath Blight Resistance in Rice.	Rice (N Y)	12(1)	93	2019		
48023	31863176	Zhong H., Liu C., Kong W., Zhang Y., Zhao G., Sun T., Li Y.	Effect of multi-allele combination on rice grain size.based on prediction of regression equation model.	Mol. Genet. Genomics	295(2)	465-474	2020		
48024	31811177	Kuanar S.R., Molla K.A., Chattopadhyay K., Sarkar R.K., Mohapatra P.K.	Introgression of Sub1 (Sub1) QTL in mega rice cultivars increases ethylene production to the detriment of grain- filling under stagnant flooding.	Sci Rep	9(1)	18567	2019		
48025	31862962	Luo H., Du B., He L., He J., Hu L., Pan S., Tang X.	Exogenous application of zinc (Zn) at the heading stage regulates 2-acetyl-1-pyrroline (2-AP) biosynthesis in different fragrant rice genotypes.	Sci Rep	9(1)	19513	2019		
48026	31878175	Yang X., Wei J., Wu Z., Gao J.	Effects of Substrate-Binding Site Residues on the Biochemical Properties of a Tau Class Glutathione <i>S</i>-Transferase from <i>Oryza sativa</i>.	Genes (Basel)	11(1)		2019		
48027	31611344	Lan T., Zheng Y., Su Z., Yu S., Song H., Zheng X., Lin G., Wu W.	<i>OsSPL10</i>, a SBP-Box Gene, Plays a Dual Role in salt tolerance and Trichome Formation in Rice (<i>Oryza sativa</i> L.).	G3 (Bethesda)	9(12)	4107-4114	2019		
48028	31771322	Yoon J., Cho L.H., Lee S., Pasriga R., Tun W., Yang J., Yoon H., Jeong H.J., Jeon J.S., An G.	Chromatin Interacting Factor OsVIL2 Is Required for Outgrowth of Axillary Buds in Rice.	Mol. Cells	42(12)	858-868	2019		
48029	31815938	Naramoto S., Jones V.A.S., Trozzi N., Sato M., Toyooka K., Shimamura M., Ishida S., Nishitani K., Ishizaki K., Nishihama R., Kohchi T., Dolan L., Kyozuka J.	A conserved regulatory mechanism mediates the convergent evolution of plant shoot lateral organs.	PLoS Biol.	17(12)	e3000560	2019		
48030	31847134	Hao Y., Geng P., Wu W., Wen Q., Rao M.	Identification of Rice Varieties and Transgenic Characteristics Based on Near-Infrared Diffuse Reflectance Spectroscopy and Chemometrics.	Molecules	24(24)		2019		
48031	32359553	Iwakami S., Tanigaki S., Uchino A., Ozawa Y., Tominaga T., Wang G.X.	Characterization of the acetolactate synthase gene family in sensitive and resistant biotypes of two tetraploid Monochoria weeds, M. vaginalis and M. korsakowii.	Pestic Biochem Physiol	165	104506	2020		
48032	31820296	Shahid M., Shah A.A., Basit F., Noman M., Zubair M., Ahmed T., Naqqash T., Manzoor I., Maqsood A.	Achromobacter sp. FB-14 harboring ACC deaminase activity augmented rice growth by upregulating the expression of stress-responsive CIPK genes under salinity stress.	Braz. J. Microbiol.	51(2)	719-728	2020		
48033	31882637	Banakar R., Eggenberger A.L., Lee K., Wright D.A., Murugan K., Zarecor S., Lawrence-Dill CJ., Sashital D.G., Wang K.	High-frequency random DNA insertions upon co-delivery of CRISPR-Cas9 ribonucleoprotein and selectable marker plasmid in rice.	Sci Rep	9(1)	19902	2019		
48034	31837627	Snouffer A., Kraus C., van der Knaap E.	The shape of things to come: ovate family proteins regulate plant organ shape.	Curr. Opin. Plant Biol.	53	98-105	2020		
48035	31837023	Dias C.S., Rios J.A., Einhardt A.M., Chaves J.A.A., Rodrigues F.A.	Effect of glutamate on Pyricularia oryzae infection of rice monitored by changes in photosynthetic parameters and antioxidant metabolism.	Physiol Plant			2019		
48036	31634039	Oreiro E.G., Grimares E.K., Atienza-Grande G., Quibod I.L., Roman-Reyna V., Oliva R.	Genome-Wide Associations and Transcriptional Profiling Reveal ROS Regulation as One Underlying Mechanism of Sheath Blight Resistance in Rice.	Mol. Plant Microbe Interact.	33(2)	212-222	2020		
48037	31857423	Chen M.X., Zhu F.Y., Gao B., Ma K.L., Zhang Y., Fernie A.R., Chen X., Dai L., Ye N.H., Zhang X., Tian Y., Zhang D., Xiao S., Zhang J., Liu Y.G.	Full-Length Transcript-Based Proteogenomics of Rice Improves Its Genome and Proteome Annotation.	Plant Physiol.	182(3)	1510-1526	2020		
48038	31811315	Neelam K., Mahajan R., Gupta V., Bhatia D., Gill B.K., Komal R., Lore J.S., Mangat G.S., Singh K.	High-resolution genetic mapping of a novel bacterial blight resistance gene xa-45(t) identified from Oryza glaberrima and transferred to Oryza sativa.	Theor. Appl. Genet.	133(3)	689-705	2020		
48039	31847303	Zhang S., Li Z., Lin L., Zhang L., Wei C.	Starch Components, Starch Properties and Appearance Quality of Opaque Kernels from Rice Mutants.	Molecules	24(24)		2019		
48040	31889226	Tang L., Zhang F., Liu A., Sun J., Mei S., Wang X., Liu Z., Liu W., Lu Q., Chen S.	Genome-Wide Association Analysis Dissects the Genetic Basis of the Grain Carbon and Nitrogen Contents in milled rice.	Rice (N Y)	12(1)	101	2019		
48041	31748812	Chao N., Jiang W.T., Wang X.C., Jiang X.N., Gai Y.	Novel motif is capable of determining CCR and CCR-like proteins based on the divergence of CCRs in plants.	Tree Physiol.	39(12)	2019-2026	2019		
48042	31802259	Zhan J., Lu X., Liu H., Zhao Q., Ye G.	Mesocotyl elongation, an essential trait for dry-seeded rice (Oryza sativa L.): a review of physiological and genetic basis.	Planta	251(1)	27	2019		
48043	31742855	Liu M.H., Kang H., Xu Y., Peng Y., Wang D., Gao L., Wang X., Ning Y., Wu J., Liu W., Li C., Liu B., Wang G.L.	Genome-wide association study identifies an NLR gene that confers partial resistance to Magnaporthe oryzae in rice.	Plant Biotechnol. J.	18(6)	1376-1383	2020	PIPR1	OsPiPR1
48044	31800632	Kang J.W., Shin D., Cho J.H., Lee J.Y., Kwon Y., Park D.S., Ko J.M., Lee J.H.	Accelerated development of rice stripe virus-resistant, near-isogenic rice lines through marker-assisted backcrossing.	PLoS ONE	14(12)	e0225974	2019		
48045	31820143	Xiaochuang C., Meiyan W., Chunquan Z., Chu Z., Junhua Z., Lianfeng Z., Lianghuan W., Qianyu J.	Glutamate dehydrogenase mediated amino acid metabolism after ammonium uptake enhances rice growth under aeration condition.	Plant Cell Rep.	39(3)	363-379	2020		
48046	31737907	Tian Y.S., Fu X.Y., Yang Z.Q., Wang B., Gao J.J., Wang M.Q., Xu J., Han H.J., Li Z.J., Yao Q.H., Peng R.H.	Metabolic engineering of rice endosperm for betanin biosynthesis.	New Phytol.	225(5)	1915-1922	2020		
48047	31802247	Takahashi S., Kumagai Y., Igarashi H., Horimai K., Ito H., Shimada T., Kato Y., Hamada S.	Biochemical analysis of a new sugary-type rice mutant, Hemisugary1, carrying a novel allele of the sugary-1 gene.	Planta	251(1)	29	2019		
48048	31857425	Foroozani M., Zahraeifard S., Oh D.H., Wang G., Dassanayake M., Smith A.P.	Low-Phosphate Chromatin Dynamics Predict a Cell Wall Remodeling Network in Rice Shoots.	Plant Physiol.	182(3)	1494-1509	2020		
48049	31807965	Wang S., Zhang H., Li W., Birech Z., Ma L., Li D., Li S., Wang L., Shang J., Hu J.	A multi-channel localized surface plasmon resonance system for absorptiometric determination of abscisic acid by using gold nanoparticles functionalized with a polyadenine-tailed aptamer.	Mikrochim Acta	187(1)	20	2019		
48050	31663135	Chen H., Zhang Z., Ni E., Lin J., Peng G., Huang J., Zhu L., Deng L., Yang F., Luo Q., Sun W., Liu Z., Zhuang C., Liu Y.G., Zhou H.	HMS1 interacts with HMS1I to regulate very-long-chain fatty acid biosynthesis and the humidity-sensitive genic male sterility in rice (Oryza sativa).	New Phytol.	225(5)	2077-2093	2020	_,HMS1	OsCER2, CER2, HMS1I, OsHMS1I, OsCER26L, CER26L,CER6/CUT1, CER6, CUT1, OsCER6, WSL4, KCS6, OsKCS6, CER6/CUT1/KCS6, OsHMS1, OsKCS8, KCS8
48051	31808006	Hsuan T.P., Jhuang P.R., Wu W.C., Lur H.S.	Thermotolerance evaluation of Taiwan Japonica type rice cultivars at the seedling stage.	Botanical Studies	60(1)	29	2019		
48052	32002696	Xiao G., Yang J., Zhu X., Wu J., Zhou B.	Prevalence of Ineffective Haplotypes at the Rice Blast Resistance (R) Gene Loci in Chinese Elite Hybrid Rice Varieties Revealed by Sequence-Based Molecular Diagnosis.	Rice (N Y)	13(1)	6	2020		
48053	31860752	Rashid F.A.A., Crisp P.A., Zhang Y., Berkowitz O., Pogson B.J., Day D.A., Masle J., Dewar R.C., Whelan J., Atkin O.K., Scafaro A.P.	Molecular and physiological responses during thermal acclimation of leaf photosynthesis and respiration in rice.	Plant Cell Environ.	43(3)	594-610	2020		
48054	32273880	Tisarum R., Theerawitaya C., Samphumphuang T., Polispitak K., Thongpoem P., Singh H.P., Cha-Um S.	Alleviation of Salt Stress in Upland Rice (<i>Oryza sativa</i> L. ssp. <i>indica</i> cv. Leum Pua) Using Arbuscular Mycorrhizal Fungi Inoculation.	Front Plant Sci	11	348	2020		
48055	31902971	Horgan F.G., Garcia C.P.F., Haverkort F., de Jong PW., Ferrater J.B.	Changes in insecticide resistance and host range performance of planthoppers artificially selected to feed on resistant rice.	Crop Prot.	127	104963	2020		
48056	31950543	Xiao Y., Zhang G., Liu D., Niu M., Tong H., Chu C.	GSK2 stabilizes OFP3 to suppress brassinosteroid responses in rice.	Plant J.			2020	BRD1,GF14C,DLT,CYP734A4,BZR1,BIN2,CYP734A6,CYP734A2,OFP3,PHI1,OFP1,CPD1,OSH15,OSH1,D11,D2	brd1, OsDWARF, DWARF, OsBR6ox, BR6ox, CYP85A1, CYP85A4, OsDWF, CYP85A1/OsDWARF, OsBRD1, OsCYP85A1,GF14c, OsGF14c, 14-3-3c,dlt, OsGRAS32, OsDLT, OsDLT1, DTL1, OsGRAS-32, OsGRAS32, GRAS-32, GRAS32, SMOS2/DLT, SMOS2, OsSMOS2, OsGS6, GS6,OsCYP734A4,OsBZR1, Os BZR1, OsBES1-6, BES1-6,GSK2, Os GSK2, OsGSK2, Os BIN2, OsBIN2, BIN2/GSK2, OsSK22/OsGSK7, OsSK22, OsGSK7, SK22, GSK7, OsSK22/GSK2 ,OsCYP734A6 ,OsCYP734A2,OsOFP3, OsOFP04, OFP4,OsPHI1, OsPHI-1, PHI-1,OsOFP1, OsOFP01,OsCPD1, CYP90A3, CYP90A3/OsCPD1, CPD, OsCPD2, CPD2,OSH15, OsH15, OSKN3, Oskn3, HOS3, D6, d6, OSH15/Oskn3, HB253, H15, OsKNOX3, KNOX3,OSKN1, Oskn1, OsKN1, OSH1/Oskn1, HB75,d11(d8), dwf10, d8, D11/CYP724B1, d11, CYP724B1, GNS4, OsD11, PMM1, OsPMM1, PMM1/D11, NBG4, OsCPB1, CPB1, CPB1/D11,d2, dwf2, CYP90D2, D2/CYP90D2, OsD2, SMG11, OsSMG11, D2/SMG11, OsD2a, OsD2b
48057	31907673	Hu W., Zhou T., Wang P., Wang B., Song J., Han Z., Chen L., Liu K., Xing Y.	Development of Whole-Genome Agarose-Resolvable LInDel Markers in Rice.	Rice (N Y)	13(1)	1	2020		
48058	32117387	Liu F., Zhang W., Schwessinger B., Wei T., Ruan D., Ronald P.	The Rice <i>Xa3</i> Gene Confers Resistance to <i>Xanthomonas oryzae</i> pv. <i>oryzae</i> in the Model Rice Kitaake Genetic Background.	Front Plant Sci	11	49	2020		
48059	31901806	Xiao A., Li W.C., Ye Z.	Effects of Fe-oxidizing bacteria (FeOB) on iron plaque formation, As concentrations and speciation in rice (Oryza sativa L.).	Ecotoxicol. Environ. Saf.	190	110136	2020		
48060	32030329	Hatzade B., Singh D., Phani V., Kumbhar S., Rao U.	Profiling of defense responsive pathway regulatory genes in Asian rice (<i>Oryza sativa</i>) against infection of <i>Meloidogyne graminicola</i> (Nematoda:Meloidogynidae).	3 Biotech	10(2)	60	2020		
48061	31940445	Gaoqiang L., Changwen D., Fei M., Yazhen S., Jianmin Z.	Responses of Leaf Cuticles to Rice Blast: Detection and Identification Using Depth-Profiling Fourier Transform Mid-Infrared Photoacoustic Spectroscopy.	Plant Dis.	104(3)	847-852	2020		
48062	31952473	Ghosal S., Quilloy F.A., Casal C., Septiningsih E.M., Mendioro M.S., Dixit S.	Trait-based mapping to identify the genetic factors underlying anaerobic germination of rice: Phenotyping, GXE, and QTL mapping.	BMC Genet.	21(1)	6	2020		
48063	32012182	Baba T., Momen M., Campbell M.T., Walia H., Morota G.	Multi-trait random regression models increase genomic prediction accuracy for a temporal physiological trait derived from high-throughput phenotyping.	PLoS ONE	15(2)	e0228118	2020		
48064	31936829	Jadamba C., Kang K., Paek N.C., Lee S.I., Yoo S.C.	Overexpression of Rice <i>Expansin7</i> (<i>OsEXPA7</i>) Confers Enhanced Tolerance to Salt Stress in Rice.	Int J Mol Sci	21(2)		2020		
48065	32256527	Jang S., Han J.H., Lee Y.K., Shin N.H., Kang Y.J., Kim C.K., Chin J.H.	Mapping and Validation of QTLs for the Amino Acid and Total Protein Content in Brown Rice.	Front Genet	11	240	2020		
48066	31918652	Eltahawy M.S., Ali N., Zaid I.U., Li D., Abdulmajid D., Bux L., Wang H., Hong D.	Association analysis between constructed SNPLDBs and GCA effects of 9 quality-related traits in parents of hybrid rice (Oryza sativa L.).	BMC Genomics	21(1)	31	2020		
48067	32013011	Zhou Y., Zhao D., Shuang L., Xiao D., Xuan Y., Duan Y., Chen L., Wang Y., Liu X., Fan H., Zhu X.	Transcriptome Analysis of Rice Roots in Response to Root-Knot Nematode Infection.	Int J Mol Sci	21(3)		2020		
48068	32181056	Zhang H., Zhu Y.J., Zhu A.D., Fan Y.Y., Huang T.X., Zhang J.F., Xie H.A., Zhuang J.Y.	Fine-mapping of <i>qTGW2</i>, a quantitative trait locus for grain weight in rice (<i>Oryza sativa</i> L.).	PeerJ	8	e8679	2020		
48069	32195053	Zhao D., Wang Z., Yang F., Zhu W., An F., Ma H., T?th T., Liao X., Yang H., Zhang L.	Amendments to saline-sodic soils showed long-term effects on improving growth and yield of rice (<i>Oryza sativa</i> L.).	PeerJ	8	e8726	2020		
48070	32346388	Zhang Z., Yang Z., Fahad S., Zhang T., Xu W., Cui K., Peng S., Huang J.	A hot-blast warming facility for simulating global warming in low-stature crop systems and its application case to assess elevated temperature effects on rice in Central China.	Plant Methods	16	57	2020		
48071	32457773	Hayano-Saito Y., Hayashi K.	<i>Stvb-i</i>, a Rice Gene Conferring Durable Resistance to <i>Rice stripe viru</i>s, Protects Plant Growth From Heat Stress.	Front Plant Sci	11	519	2020	_,_,_,STVB,_	HSP70, hsp70, OsHSP70 , OsMed37_8, Med37_8 ,ST01,,Stvb(St2), St2, Stvb, Stv2,OsHSP70, hsp70, OsMed37_4, Med37_4 
48072	32114415	Yu L., Gao B., Li Y., Tan W., Li M., Zhou L., Peng C., Xiao L., Liu Y.	The synthesis of strigolactone is affected by endogenous ascorbic acid in transgenic rice for l-Galactono-1, 4-lactone dehydrogenase suppressed or overexpressing.	J. Plant Physiol.	246-247	153139			
48073	31918255	Reis A.R.D., Boleta E.H.M., Alves C.Z., Cotrim M.F., Barbosa J.Z., Silva V.M., Porto R.L., Lanza MGDB., Lavres J., Gomes M.H.F., Carvalho H.W.P.	Selenium toxicity in upland field-grown rice: Seed physiology responses and nutrient distribution using the mu-XRF technique.	Ecotoxicol. Environ. Saf.	190	110147	2020		
48074	32020909	Kumar G., Dasgupta I.	Comprehensive molecular insights into the stress response dynamics of rice (<i>Oryza sativa</i> L.) during rice tungro disease by RNA-seq-based comparative whole transcriptome analysis.	J. Biosci.	45		2020		
48075	32088890	Espinas N.A., Villar-Briones A., Roy M.C., Saze H.	Rice Histone Propionylation and Generation of Chemically Derivatized Synthetic H3 and H4 Peptides for Identification of Acetylation Sites and Quantification.	Methods Mol. Biol.	2093	81-92	2020		
48076	31925598	Balyan S., Joseph S.V., Jain R., Mutum R.D., Raghuvanshi S.	Investigation into the miRNA/5' isomiRNAs function and drought-mediated miRNA processing in rice.	Funct. Integr. Genomics			2020		
48077	32030327	Liu X., Zhou X., Li K., Wang D., Ding Y., Liu X., Luo J., Fang C.	A simple and efficient cloning system for CRISPR/Cas9-mediated genome editing in rice.	PeerJ	8	e8491	2020		
48078	32018197	Zhou J., Li P., Meng D., Gu Y., Zheng Z., Yin H., Zhou Q., Li J.	Isolation, characterization and inoculation of Cd tolerant rice endophytes and their impacts on rice under Cd contaminated environment.	Environ. Pollut.	260	113990	2020		
48079	31991350	Wu Y., Yang L., Gong H., Dang F., Zhou D.M.	Contrasting effects of iron plaque on the bioavailability of metallic and sulfidized silver nanoparticles to rice.	Environ. Pollut.	260	113969	2020		
48080	31996126	Irigoyen M.L., Garceau D.C., Bohorquez-Chaux A., Lopez-Lavalle LAB., Perez-Fons L., Fraser P.D., Walling L.L.	Genome-wide analyses of cassava Pathogenesis-related (PR) gene families reveal core transcriptome responses to whitefly infestation, salicylic acid and jasmonic acid.	BMC Genomics	21(1)	93	2020		
48081	31854948	Ma H.H., Peng M., Liu F., Guo F., Tang S.Q., Liu X.J., Zhou Y.L., Yang K., Li K., Yang Z., Cheng H.X.	[Bioavailability, Translocation, and Accumulation Characteristic of Heavy Metals in a Soil-Crop System from a Typical Carbonate Rock Area in Guangxi, China].	Huan Jing Ke Xue	41(1)	449-459	2020		
48082	31961209	Xia Z., Yang J., Wang J., Wang S., Liu Y.	Optimizing Rice Near-Infrared Models Using Fractional Order Savitzky-Golay Derivation (FOSGD) Combined with Competitive Adaptive Reweighted Sampling (CARS).	Appl Spectrosc	74(4)	417-426	2020		
48083	31624838	G?zquez A., Abdelgawad H., Baggerman G., Van Raemdonck G., Asard H., Maiale S.J., Rodr?guez AA., Beemster G.T.S.	Redox homeostasis in the growth zone of the rice leaf plays a key role in cold tolerance.	J. Exp. Bot.	71(3)	1053-1066	2020		
48084	31980666	Ponnuswamy R., Singh A.K., Raman M.S., Subbarao L.V., C N N.	Conversion of partial restorer Swarna into restorer by transferring fertility restorer Rf gene(s) through marker assisted back cross breeding (MABB) in rice.	Sci Rep	10(1)	1101	2020		
48085	31913339	Lin K., Wu J.	Effect of introducing frogs and fish on soil phosphorus availability dynamics and their relationship with rice yield in paddy fields.	Sci Rep	10(1)	21	2020		
48086	32117601	Wang Y., Yu Y., Huang M., Gao P., Chen H., Liu M., Chen Q., Yang Z., Sun Q.	Transcriptomic and proteomic profiles of II YOU 838 (<i>Oryza sativa</i>) provide insights into heat stress tolerance in hybrid rice.	PeerJ	8	e8306	2020		
48087	32006119	Chun Y., Fang J., Zafar S.A., Shang J., Zhao J., Yuan S., Li X.	MINI SEED 2 (MIS2) Encodes a Receptor-like Kinase that Controls grain size and Shape in Rice.	Rice (N Y)	13(1)	7	2020	MIS2,BZR1,GW2,TID1,D2,BG1,OUL1,EP2,GS5,ELF1,SRS3,D11,FUWA,XIAO	OsCR4, CR4, OsMIS2,OsBZR1, Os BZR1, OsBES1-6, BES1-6,OsGW2, OsRING429, RING429, GNL44, OsGNL44,OsTID1, TubA2, SRS5, OS-TubA2, OsTubA2, OsSRS5, ,d2, dwf2, CYP90D2, D2/CYP90D2, OsD2, SMG11, OsSMG11, D2/SMG11, OsD2a, OsD2b,OsaBG1, OsBG1,ROC5, Roc5(t), Roc5, GL2-5, OsROC5, CLF1, OsCLF1, OsOUL1, OsHDZ7, OsHDZIP7, HDZ7, HDZIP7,ep2, EP2/DEP2/SRS1, SRS1/DEP2, DEP2, SRS1, OsSRS1, CL7(t), OsRELA, RELA,OsSCP26, SCP26, OsGS5,OsPUB31, PUB31, OsPUB75, PUB75, TUD1, OsTUD1, DSG1,  OsPUB75, PUB75,OsSRS3, SAR1, OsSAR1, KIN13A, OsKIN13A,d11(d8), dwf10, d8, D11/CYP724B1, d11, CYP724B1, GNS4, OsD11, PMM1, OsPMM1, PMM1/D11, NBG4, OsCPB1, CPB1, CPB1/D11,OsFUWA,OsXIAO, OsCLV2e, CLV2e
48088	32038554	Sun L., Lei P., Wang Q., Ma J., Zhan Y., Jiang K., Xu Z., Xu H.	The Endophyte <i>Pantoea alhagi</i> NX-11 Alleviates Salt Stress Damage to Rice Seedlings by Secreting Exopolysaccharides.	Front Microbiol	10	3112	2019		
48089	32265960	Wu M., Liu H., Lin Y., Chen J., Fu Y., Luo J., Zhang Z., Liang K., Chen S., Wang F.	In-Frame and Frame-Shift Editing of the <i>Ehd1</i> Gene to Develop <i>Japonica</i> Rice With Prolonged Basic Vegetative Growth Periods.	Front Plant Sci	11	307	2020		
48090	31985350	Nakamichi N., Kudo T., Makita N., Kiba T., Kinoshita T., Sakakibara H.	flowering time control in rice by introducing Arabidopsis clock-associated PSEUDO-RESPONSE REGULATOR 5.	Biosci. Biotechnol. Biochem.	84(5)	970-979	2020		
48091	32024420	Tsai H.J., Shao K.H., Chan M.T., Cheng C.P., Yeh K.W., Oelm?ller R., Wang S.J.	<i>Piriformospora indica</i> symbiosis improves water stress tolerance of rice through regulating stomata behavior and ROS scavenging systems.	Plant Signal Behav	15(2)	1722447	2020		
48092	31910435	Muthu V., Abbai R., Nallathambi J., Rahman H., Ramasamy S., Kambale R., Thulasinathan T., Ayyenar B., Muthurajan R.	Pyramiding QTLs controlling tolerance against drought, salinity, and submergence in rice through marker assisted breeding.	PLoS ONE	15(1)	e0227421	2020		
48093	32308659	Wu L., Cui Y., Xu Z., Xu Q.	Identification of Multiple Grain Shape-Related Loci in Rice Using Bulked Segregant Analysis With High-Throughput Sequencing.	Front Plant Sci	11	303	2020		
48094	31828801	Li G., Qi X., Sun G., Rocha R.O., Segal L.M., Downey K.S., Wright J.D., Wilson R.A.	Terminating rice innate immunity induction requires a network of antagonistic and redox-responsive E3 ubiquitin ligases targeting a fungal sirtuin.	New Phytol.	226(2)	523-540	2020		
48095	32041025	Ochoa M., Tierra W., Tupuna-Yerovi DS., Guanoluisa D., Otero X.L., Ruales J.	Assessment of cadmium and lead contamination in rice farming soils and rice (Oryza sativa L.) from Guayas province in Ecuador.	Environ. Pollut.	260	114050	2020		
48096	31912615	Han L., Zhou X., Zhao Y., Zhu S., Wu L., He Y., Ping X., Lu X., Huang W., Qian J., Zhang L., Jiang X., Zhu D., Luo C., Li S., Dong Q., Fu Q., Deng K., Wang X., Wang L., Peng S., Wu J., Li W., Friml J., Zhu Y., He X., Du Y.	Colonization of endophyte Acremonium sp. D212 in Panax notoginseng and rice mediated by auxin and jasmonic acid.	J Integr Plant Biol			2020		
48097	32300357	Jr V.M.B., Luo J., Li Z., Gidley M.J., Bird A.R., Tetlow I.J., Fitzgerald M., Jobling S.A., Rahman S.	Functional Genomic Validation of the Roles of <i>Soluble Starch Synthase IIa</i> in <i>Japonica</i> Rice Endosperm.	Front Genet	11	289	2020		
48098	31923187	Zhang H., Li M., He D., Wang K., Yang P.	Mutations on ent-kaurene oxidase 1 encoding gene attenuate its enzyme activity of catalyzing the reaction from ent-kaurene to ent-kaurenoic acid and lead to delayed germination in rice.	PLoS Genet.	16(1)	e1008562	2020		
48099	31906775	Fu J., Liu B.	Enhanced yield performance of transgenic <i>cry1C*</i> rice in saline-alkaline soil.	GM Crops Food	11(2)	97-112	2020		
48100	31306479	Kato Y., Collard B.C.Y., Septiningsih E.M., Ismail A.M.	Increasing flooding tolerance in rice: combining tolerance of submergence and of stagnant flooding.	Ann. Bot.	124(7)	1199-1210	2020		
48101	32421736	Reig-Valiente JL., Borred? C., Tal?n M., Domingo C.	The G123 rice mutant, carrying a mutation in SE13, presents alterations in the expression patterns of photosynthetic and major flowering regulatory genes.	PLoS ONE	15(5)	e0233120	2020		
48102	31959799	Dossa G.S., Quibod I., Atienza-Grande G., Oliva R., Maiss E., Vera Cruz C., Wydra K.	Rice pyramided line IRBB67 (Xa4/Xa7) homeostasis under combined stress of high temperature and bacterial blight.	Sci Rep	10(1)	683	2020		
48103	32218795	Sellamuthu G., Jegadeeson V., Sajeevan R.S., Rajakani R., Parthasarathy P., Raju K., Shabala L., Chen Z.H., Zhou M., Sowdhamini R., Shabala S., Venkataraman G.	Distinct Evolutionary Origins of Intron Retention Splicing Events in <i>NHX1</i> Antiporter Transcripts Relate to Sequence Specific Distinctions in <i>Oryza</i> Species.	Front Plant Sci	11	267	2020		
48104	32117372	Yang D., Peng S., Wang F.	Response of Photosynthesis to High Growth Temperature Was Not Related to Leaf Anatomy Plasticity in Rice (<i>Oryza sativa</i> L.).	Front Plant Sci	11	26	2020		
48105	32063914	Chen X., Marsza?kowska M., Reinhold-Hurek B.	Jasmonic Acid, Not Salicyclic Acid Restricts Endophytic Root Colonization of Rice.	Front Plant Sci	10	1758	2019		
48106	31964985	Mizuno H., Katagiri S., Kanamori H., Mukai Y., Sasaki T., Matsumoto T., Wu J.	Evolutionary dynamics and impacts of chromosome regions carrying R-gene clusters in rice.	Sci Rep	10(1)	872	2020		
48107	31979223	Fukushima A., Perera I., Hosoya K., Akabane T., Hirotsu N.	Genotypic Differences in the Effect of P Fertilization on Phytic Acid Content in Rice Grain.	Plants (Basel)	9(2)		2020		
48108	32153631	Thapa R., Tabien R.E., Thomson M.J., Septiningsih E.M.	Genome-Wide Association Mapping to Identify Genetic Loci for cold tolerance and Cold Recovery During Germination in Rice.	Front Genet	11	22	2020		
48109	31915945	Jiang N., Yan J., Liang Y., Shi Y., He Z., Wu Y., Zeng Q., Liu X., Peng J.	Resistance Genes and their Interactions with Bacterial Blight/Leaf Streak Pathogens (Xanthomonas oryzae) in Rice (Oryza sativa L.)-an Updated Review.	Rice (N Y)	13(1)	3	2020		
48110	31962168	Mi J., Li G., Xu C., Yang J., Yu H., Wang G., Li X., Xiao J., Song H., Zhang Q., Ouyang Y.	Artificial Selection in Domestication and Breeding Prevents Speciation in Rice.	Mol Plant	13(4)	650-657	2020		
48111	31986137	Read A.C., Moscou M.J., Zimin A.V., Pertea G., Meyer R.S., Purugganan M.D., Leach J.E., Triplett L.R., Salzberg S.L., Bogdanove A.J.	Genome assembly and characterization of a complex zfBED-NLR gene-containing disease resistance locus in Carolina Gold Select rice with Nanopore sequencing.	PLoS Genet.	16(1)	e1008571	2020		
48112	31734927	Nguyen T.H., Mai H.T.T., Moukouanga D., Lebrun M., Bellafiore S., Champion A.	CRISPR/Cas9-Mediated Gene Editing of the Jasmonate Biosynthesis OsAOC Gene in Rice.	Methods Mol. Biol.	2085	199-209	2020		
48113	31991733	Yu Y., Zhu M., Cui Y., Liu Y., Li Z., Jiang N., Xu Z., Xu Q., Sui G.	Genome Sequence and QTL Analyses Using Backcross Recombinant Inbred Lines (BILs) and BILF1 Lines Uncover Multiple Heterosis-related Loci.	Int J Mol Sci	21(3)		2020		
48114	32407369	Morales K.Y., Singh N., Perez F.A., Ignacio J.C., Thapa R., Arbelaez J.D., Tabien R.E., Famoso A., Wang D.R., Septiningsih E.M., Shi Y., Kretzschmar T., McCouch S.R., Thomson M.J.	An improved 7K SNP array, the C7AIR, provides a wealth of validated SNP markers for rice breeding and genetics studies.	PLoS ONE	15(5)	e0232479	2020		
48115	31906566	De Kesel J., G?mez-Rodr?guez R., Bonneure E., Mangelinckx S., Kyndt T.	The Use of PTI-Marker Genes to Identify Novel Compounds that Establish Induced Resistance in Rice.	Int J Mol Sci	21(1)		2020		
48116	32174951	Luo J.S., Xiao Y., Yao J., Wu Z., Yang Y., Ismail A.M., Zhang Z.	Overexpression of a Defensin-Like Gene <i>CAL2</i> Enhances Cadmium Accumulation in Plants.	Front Plant Sci	11	217	2020	CAL1,CAL2	OsCPT1, CPT1, DEFL7, OsDEFL7, OsDf-07, Df-07, OsPR12, PR12, DEF7, OsDEF7, OsAFP1, AFP1, OsPDF2.2, PDF2.2,DEFL12, OsDEFL12, OsDf-12, Df-12, OsCAL2, DEF12, OsDEF12
48117	31957411	Qu L.L., Peng C.L., Li S.B.	[Isolation and screening of a phytate phosphate-solubilizing Paenibacillus sp. and its growth-promoting effect on rice seeding].	Ying Yong Sheng Tai Xue Bao	31(1)	326-332	2020		
48118	32000029	Ma Q., Zhao W., Guan D.X., Teng H.H., Ji J., Ma L.Q.	Comparing CaCl2, EDTA and DGT methods to predict Cd and Ni accumulation in rice grains from contaminated soils.	Environ. Pollut.	260	114042	2020		
48119	32391027	Ponce K., Zhang Y., Guo L., Leng Y., Ye G.	Genome-Wide Association Study of grain size.Traits in <i>Indica</i> Rice Multiparent Advanced Generation Intercross (MAGIC) Population.	Front Plant Sci	11	395	2020		
48120	31912892	Reddy S.H., Singhal R.K., DaCosta M.V.J., Kambalimath S.K., Rajanna M.P., Muthurajan R., Sevanthi A.M., Mohapatra T., Sarla N., Chinnusamy V., S GK., Singh A.K., Singh N.K., Sharma R.P., Pathappa N., Sheshshayee S.M.	Leaf mass area determines water use efficiency through its influence on carbon gain in rice mutants.	Physiol Plant			2020		
48121	32369522	Shao Y., Peng Y., Mao B., Lv Q., Yuan D., Liu X., Zhao B.	Allelic variations of the Wx locus in cultivated rice and their use in the development of hybrid rice in China.	PLoS ONE	15(5)	e0232279	2020		
48122	31925978	Wanke A., Rovenich H., Schwanke F., Velte S., Becker S., Hehemann J.H., Wawra S., Zuccaro A.	Plant species-specific recognition of long and short beta-1,3-linked glucans is mediated by different receptor systems.	Plant J.			2020		
48123	31991348	Cai Y., Wang M., Chen B., Chen W., Xu W., Xie H., Long Q., Cai Y.	Effects of external Mn2+ activities on OsNRAMP5 expression level and Cd accumulation in indica rice.	Environ. Pollut.	260	113941	2020		
48124	31975784	Najeeb S., Ali J., Mahender A., Pang Y.L., Zilhas J., Murugaiyan V., Vemireddy L.R., Li Z.	Identification of main-effect quantitative trait loci (QTLs) for low-temperature stress tolerance germination- and early seedling vigor-related traits in rice (<i>Oryza sativa</i> L.).	Mol. Breed.	40(1)	10	2020		
48125	31972985	Abedi T., Mojiri A.	Arsenic Uptake and Accumulation Mechanisms in Rice Species.	Plants (Basel)	9(2)		2020		
48126	32265976	Zhang A., Gao Y., Li Y., Ruan B., Yang S., Liu C., Zhang B., Jiang H., Fang G., Ding S., Jahan N., Xie L., Dong G., Xu Z., Gao Z., Guo L., Qian Q.	Genetic Analysis for Cooking and Eating Quality of Super Rice and Fine Mapping of a Novel Locus <i>qGC10</i> for gel consistency.	Front Plant Sci	11	342	2020		
48127	32076435	Xie L.H., Zhu Y.J., Tang S.Q., Wei X.J., Sheng Z.H., Jiao G.A., Hu P.S., Zhuang J.Y.	Pleiotropic Effects of Rice Florigen Gene <i>RFT1</i> on the Amino Acid Content of Unmilled Rice.	Front Genet	11	13	2020		
48128	32306347	Shinya T., Shibuya N., Kaku H.	Affinity Labeling and Purification of Plant Chitin-Binding LysM Receptor with Chitin Octasaccharide Derivatives.	Methods Mol. Biol.	2132	401-412	2020		
48129	31624841	Peng H., Wang K., Chen Z., Cao Y., Gao Q., Li Y., Li X., Lu H., Du H., Lu M., Yang X., Liang C.	MBKbase for rice: an integrated omics knowledgebase for molecular breeding in rice.	Nucleic Acids Res.	48(D1)	D1085-D1092	2020		
48130	32153323	Yadav S., Mishra A.	Ectopic expression of C4 photosynthetic pathway genes improves carbon assimilation and alleviate stress tolerance for future climate change.	Physiol Mol Biol Plants	26(2)	195-209	2020		
48131	32126126	Lacchini E., Kiegle E., Castellani M., Adam H., Jouannic S., Gregis V., Kater M.M.	CRISPR-mediated accelerated domestication of African rice landraces.	PLoS ONE	15(3)	e0229782	2020		
48132	31950589	Wu H.M., Xie D.J., Tang Z.S., Shi D.Q., Yang W.C.	PINOID regulates floral organ development by modulating auxin transport and interacts with MADS16 in rice.	Plant Biotechnol. J.			2020		
48133	32038697	Huang Y., Han Z., Cheng N., Luo M., Bai X., Xing Y.	Minor Effects of 11 <i>Dof</i> Family Genes Contribute to the Missing Heritability of heading date in Rice (<i>Oryza sativa</i> L.).	Front Plant Sci	10	1739	2019		
48134	32391053	Zhang L.L., Li Y., Zheng Y.P., Wang H., Yang X., Chen J.F., Zhou S.X., Wang L.F., Li X.P., Ma X.C., Zhao J.Q., Pu M., Feng H., Fan J., Zhang J.W., Huang Y.Y., Wang W.M.	Expressing a Target Mimic of miR156fhl-3p Enhances Rice blast disease Resistance Without Yield Penalty by Improving <i>SPL14</i> Expression.	Front Genet	11	327	2020		
48135	31919537	Zhang Z., Gao S., Chu C.	Improvement of nutrient use efficiency in rice: current toolbox and future perspectives.	Theor. Appl. Genet.	133(5)	1365-1384	2020		
48136	32001363	Kuang Y., Li S., Ren B., Yan F., Spetz C., Li X., Zhou X., Zhou H.	Base-Editing-Mediated Artificial Evolution of OsALS1 In Planta to Develop Novel Herbicide-Tolerant Rice Germplasms.	Mol Plant	13(4)	565-572	2020	ALS,ALS3,ALS2	OsALS, AHAS, OsALS1, ALS1,OsALS3,OsALS2
48137	31650772	Adhikari A., Lee K.E., Khan M.A., Kang S.M., Adhikari B., Imran M., Jan R., Kim K.M., Lee I.J.	Effect of Silicate and Phosphate Solubilizing Rhizobacterium <i>Enterobacter ludwigii</i> GAK2 on Oryza sativa L. under Cadmium Stress.	J. Microbiol. Biotechnol.	30(1)	118-126	2020		
48138	31626290	Joshi R., Sahoo K.K., Singh A.K., Anwar K., Pundir P., Gautam R.K., Krishnamurthy S.L., Sopory S.K., Pareek A., Singla-Pareek SL.	Enhancing trehalose biosynthesis improves yield potential in marker-free transgenic rice under drought, saline, and sodic conditions.	J. Exp. Bot.	71(2)	653-668	2020		
48139	32117948	Buffon G., Lamb T.I., Lopes M.C.B., Sperotto R.A., Timmers LFSM.	Push It to the Limit: Identification of Novel Amino Acid Changes on the Acetolactate Synthase Enzyme of Rice That Putatively Confer High Level of Tolerance to Different Imidazolinones.	Front Bioeng Biotechnol	8	73	2020		
48140	32153645	Kishor D.S., Seo J., Chin J.H., Koh H.J.	Evaluation of Whole-Genome Sequence, Genetic Diversity, and Agronomic Traits of Basmati Rice (<i>Oryza sativa</i> L.).	Front Genet	11	86	2020		
48141	32004947	Mahapatra K., Roy S.	An insight into the mechanism of DNA damage response in plants- role of SUPPRESSOR OF GAMMA RESPONSE 1: An overview.	Mutat. Res.	819-820	111689			
48142	32210447	Zhao W., Liang H., Fu Y., Liu Y., Yang C., Zhang T., Wang T., Rong L., Zhang S., Wu Z., Sun W.	Effects of different fertilization modes on rice yield and quality under a rice-crab culture system.	PLoS ONE	15(3)	e0230600	2020		
48143	31919631	Yu X., Xia S., Xu Q., Cui Y., Gong M., Zeng D., Zhang Q., Shen L., Jiao G., Gao Z., Hu J., Zhang G., Zhu L., Guo L., Ren D., Qian Q.	ABNORMAL FLOWER AND GRAIN 1 encodes OsMADS6 and determines palea identity and affects rice grain yield and quality.	Sci China Life Sci	63(2)	228-238	2020		
48144	32161611	Zhang Q.F., Li J., Bi F.C., Liu Z., Chang Z.Y., Wang L.Y., Huang L.Q., Yao N.	Ceramide-Induced Cell Death Depends on Calcium and Caspase-Like Activity in Rice.	Front Plant Sci	11	145	2020		
48145	31923921	Ma Z., Wang L., Zhao M., Gu S., Wang C., Zhao J., Tang Z., Gao H., Zhang L., Fu L., Yin Y., He N., Zheng W., Xu Z.	iTRAQ proteomics reveals the regulatory response to Magnaporthe oryzae in durable resistant vs. susceptible rice genotypes.	PLoS ONE	15(1)	e0227470	2020		
48146	32095364	Song Y., Liu J., Chen F.	Elevated CO2 not increased temperature has specific effects on soil nematode community either with planting of transgenic <i>Bt</i> rice or non-<i>Bt</i> rice.	PeerJ	8	e8547	2020		
48147	32294092	Parmar S., Gharat S.A., Tagirasa R., Chandra T., Behera L., Dash S.K., Shaw B.P.	Identification and expression analysis of miRNAs and elucidation of their role in salt tolerance in rice varieties susceptible and tolerant to salinity.	PLoS ONE	15(4)	e0230958	2020		
48148	31973039	Li D., Wang R., Xie C., Liu L., Zhang J., Li R., Wang F., Zhou M., Liu W.	A Recognition Method for Rice Plant Diseases and Pests Video Detection Based on Deep Convolutional Neural Network.	Sensors (Basel)	20(3)		2020		
48149	31583666	Liu H., Cao A., Yang L., Wang J.	Rice Female Meiosis: Genome-Wide mRNA, Small RNA, and DNA Methylation Analysis During Ovule Development.	Methods Mol. Biol.	2061	267-280	2020		
48150	31974373	Zhang K., Su J., Xu M., Zhou Z., Zhu X., Ma X., Hou J., Tan L., Zhu Z., Cai H., Liu F., Sun H., Gu P., Li C., Liang Y., Zhao W., Sun C., Fu Y.	A common wild rice-derived BOC1 allele reduces callus browning in indica rice transformation.	Nat Commun	11(1)	443	2020	BOC1,REP1,WRKY23,PR10B	OsSRO1c, SRO1c, OsBOC1,REP-1, OsREP-1, OsREP1, OsSAG12-1, SAG12-1, OsEnS-21,OsWRKY23,RPR10b, PR-10b, PR10b, PBZ1, PBZ-1, OsPBZc, OsPR10b, BetV, OsBetV
48151	31972388	Barman F., Majumdar S., Arzoo S.H., Kundu R.	Genotypic variation among 20 rice cultivars/landraces in response to cadmium stress grown locally in West Bengal, India.	Plant Physiol. Biochem.	148	193-206	2020		
48152	31948408	Ali N., Li D., Eltahawy M.S., Abdulmajid D., Bux L., Liu E., Dang X., Hong D.	Mining of favorable alleles for seed reserve utilization efficiency in Oryza sativa by means of association mapping.	BMC Genet.	21(1)	4	2020		
48153	31998336	Baek D., Rokibuzzaman M., Khan A., Kim M.C., Park H.J., Yun D.J., Chung Y.R.	Plant-Growth Promoting <i>Bacillus oryzicola</i> YC7007 Modulates Stress-Response Gene Expression and Provides Protection From Salt Stress.	Front Plant Sci	10	1646	2019		
48154	31961455	Fabre D., Dingkuhn M., Yin X., Clement-Vidal A., Roques S., Soutiras A., Luquet D.	Genotypic variation in source and sink traits affects the response of photosynthesis and growth to elevated atmospheric CO2.	Plant Cell Environ.	43(3)	579-593	2020		
48155	32168374	Niu R., Zhou Y., Zhang Y., Mou R., Tang Z., Wang Z., Zhou G., Guo S., Yuan M., Xu G.	uORFlight: a vehicle toward uORF-mediated translational regulation mechanisms in eukaryotes.	Database (Oxford)	2020		2020		
48156	31599330	Li Z., Zhang Y., Zou D., Zhao Y., Wang H.L., Zhang Y., Xia X., Luo J., Guo H., Zhang Z.	LSD 3.0: a comprehensive resource for the leaf senescence research community.	Nucleic Acids Res.	48(D1)	D1069-D1075	2020		
48157	32010117	Kwak G.Y., Choi O., Goo E., Kang Y., Kim J., Hwang I.	Quorum Sensing-Independent Cellulase-Sensitive Pellicle Formation Is Critical for Colonization of <i>Burkholderia glumae</i> in Rice Plants.	Front Microbiol	10	3090	2019		
48158	32076430	Huang Q., Zhang J., Wei L., Guo F., Zou Q.	6mA-RicePred: A Method for Identifying DNA <i>N</i>6-Methyladenine Sites in the Rice Genome Based on Feature Fusion.	Front Plant Sci	11	4	2020		
48159	31948113	Baisakh N., Yabes J., Gutierrez A., Mangu V., Ma P., Famoso A., Pereira A.	Genetic Mapping Identifies Consistent Quantitative Trait Loci for Yield Traits of Rice under Greenhouse Drought Conditions.	Genes (Basel)	11(1)		2020		
48160	31985873	Liu X., Qin R., Li J., Liao S., Shan T., Xu R., Wu D., Wei P.	A CRISPR-Cas9-mediated domain-specific base-editing screen enables functional assessment of ACCase variants in rice.	Plant Biotechnol. J.			2020	ACC1 	OsACC1 
48161	31968705	Li P., Liu H., Yang H., Pu X., Li C., Huo H., Chu Z., Chang Y., Lin Y., Liu L.	Translocation of Drought-Responsive Proteins from the Chloroplasts.	Cells	9(1)		2020		
48162	31953514	Wang X., Zheng H., Tang Q., Chen Q., Mo W.	Seed filling under different temperatures improves the seed vigor of hybrid rice (Oryza sativa L.) via starch accumulation and structure.	Sci Rep	10(1)	563	2020		
48163	32084193	Angeles-Shim RB., Shim J., Vinarao R.B., Lapis R.S., Singleton J.J.	A novel locus from the wild allotetraploid rice species Oryza latifolia Desv. confers bacterial blight (Xanthomonas oryzae pv. oryzae) resistance in rice (O. sativa).	PLoS ONE	15(2)	e0229155	2020		
48164	32426023	Teramoto S., Takayasu S., Kitomi Y., Arai-Sanoh Y., Tanabata T., Uga Y.	High-throughput three-dimensional visualization of root system architecture of rice using X-ray computed tomography.	Plant Methods	16	66	2020		
48165	31936451	Wu Y.B., Li G., Zhu Y.J., Cheng Y.C., Yang J.Y., Chen H.Z., Song X.J., Ying J.Z.	Genome-Wide Identification of QTLs for Grain Protein Content Based on Genotyping-by-Resequencing and Verification of <i>qGPC1-1</i> in Rice.	Int J Mol Sci	21(2)		2020		
48166	31947822	Silva R., Filgueiras L., Santos B., Coelho M., Silva M., Estrada-Bonilla G., Vidal M., Baldani J.I., Meneses C.	<i>Gluconacetobacter diazotrophicus</i> Changes The Molecular Mechanisms of Root Development in <i>Oryza sativa</i> L. Growing Under Water Stress.	Int J Mol Sci	21(1)		2020		
48167	31916673	Wang M., Xu Z., Gosavi G., Ren B., Cao Y., Kuang Y., Zhou C., Spetz C., Yan F., Zhou X., Zhou H.	Targeted base editing in rice with CRISPR/ScCas9 system.	Plant Biotechnol. J.			2020		
48168	31956025	Toriba T., Tokunaga H., Nagasawa K., Nie F., Yoshida A., Kyozuka J.	Suppression of Leaf Blade Development by BLADE-ON-PETIOLE Orthologs Is a Common Strategy for Underground Rhizome Growth.	Curr. Biol.	30(3)	509-516.e3	2020		
48169	31944084	Sutariati G.A.K., Rahni N.M., Madiki A., Mudi La., Guyasa I.M., Zahrima	Characterization of Endophytic-rhizobacteria from Areca Nut Rhizosphere to Dissolve Phosphates, Nitrogen Fixation of IAA Hormone Synthesis.	Pak. J. Biol. Sci.	23(3)	240-247	2020		
48170	31965382	Banakar R., Schubert M., Collingwood M., Vakulskas C., Eggenberger A.L., Wang K.	Comparison of CRISPR-Cas9/Cas12a Ribonucleoprotein Complexes for Genome Editing Efficiency in the Rice Phytoene Desaturase (OsPDS) Gene.	Rice (N Y)	13(1)	4	2020		
48171	31721656	Piombo E., Bosio P., Acquadro A., Abbruscato P., Spadaro D.	Different Phenotypes, Similar Genomes: Three Newly Sequenced <i>Fusarium fujikuroi</i> Strains Induce Different Symptoms in Rice Depending on Temperature.	Phytopathology	110(3)	656-665	2020		
48172	31993730	Ni?o MC., Kang K.K., Cho Y.G.	Genome-wide transcriptional response of papain-like cysteine protease-mediated resistance against Xanthomonas oryzae pv. oryzae in rice.	Plant Cell Rep.	39(4)	457-472	2020		
48173	31989206	Cao Z., Li Y., Tang H., Zeng B., Tang X., Long Q., Wu X., Cai Y., Yuan L., Wan J.	Fine mapping of the qHTB1-1QTL, which confers heat tolerance at the booting stage, using an Oryza rufipogon Griff. introgression line.	Theor. Appl. Genet.	133(4)	1161-1175	2020		
48174	31953707	Xu Y., Meng X., Wang J., Qin B., Wang K., Li J., Wang C., Yu H.	ScCas9 recognizes NNG protospacer adjacent motif in genome editing of rice.	Sci China Life Sci	63(3)	450-452	2020		
48175	32010158	Pariasca-Tanaka J., Baertschi C., Wissuwa M.	Identification of Loci Through Genome-Wide Association Studies to Improve Tolerance to Sulfur Deficiency in Rice.	Front Plant Sci	10	1668	2019		
48176	32089524	Suman K., Madhubabu P., Rathod R., Sanjeeva Rao D., Rojarani A., Prashant S., Subbarao L.V., Ravindrababu V., Neeraja C.N.	Variation of grain quality characters and marker-trait association in rice (<i>Oryza sativa</i> L.).	J. Genet.	99		2020		
48177	31896557	Li C., Xu H., Fu F.F., Russell S.D., Sundaresan V., Gent J.I.	Genome-wide redistribution of 24-nt siRNAs in rice gametes.	Genome Res.	30(2)	173-184	2020		
48178	31958629	Liu T.T., Huang D.Y., Zhu Q.H., Zhou J.L., Zhang Q., Zhu H.H., Xu C.	Increasing soil moisture faciliates the outcomes of exogenous sulfate rather than element sulfur in reducing cadmium accumulation in rice (Oryza sativa L.).	Ecotoxicol. Environ. Saf.	191	110200	2020		
48179	31995780	Huang X., Li Y., Chen K., Chen H., Wang F., Han X., Zhou B., Chen H., Yuan R.	NOM mitigates the phytotoxicity of AgNPs by regulating rice physiology, root cell wall components and root morphology.	Environ. Pollut.	260	113942	2020		
48180	31965334	Moens M., Branco R., Morais P.V.	Arsenic accumulation by a rhizosphere bacterial strain Ochrobactrum tritici reduces rice plant arsenic levels.	World J. Microbiol. Biotechnol.	36(2)	23	2020		
48181	31995782	Xue S., Jiang X., Wu C., Hartley W., Qian Z., Luo X., Li W.	Microbial driven iron reduction affects arsenic transformation and transportation in soil-rice system.	Environ. Pollut.	260	114010	2020		
48182	32158451	Sharma A., Satish D., Sharma S., Gupta D.	iRSVPred: A Web Server for Artificial Intelligence Based Prediction of Major Basmati Paddy Seed Varieties.	Front Plant Sci	10	1791	2019		
48183	32029874	Han J., Xia Z., Liu P., Li C., Wang Y., Guo L., Jiang G., Zhai W.	TALEN-based editing of TFIIAy5 changes rice response to Xanthomonas oryzae pv. Oryzae.	Sci Rep	10(1)	2036	2020		
48184	31994745	Jiang N., Yu P., Fu W., Li G., Feng B., Chen T., Li H., Tao L., Fu G.	Acid invertase confers heat tolerance in rice plants by maintaining energy homoeostasis of spikelets.	Plant Cell Environ.	43(5)	1273-1287	2020		
48185	32205930	Sen A., Puthur J.T.	Influence of different seed priming techniques on oxidative and antioxidative responses during the germination of <i>Oryza sativa</i> varieties.	Physiol Mol Biol Plants	26(3)	551-565	2020		
48186	31677347	Li L.L., Zhao H.H., Kong C.H.	(-)-Loliolide, the most ubiquitous lactone, is involved in barnyardgrass-induced rice allelopathy.	J. Exp. Bot.	71(4)	1540-1550	2020		
48187	31856943	Panda D., Mohanty B., Behera P.K., Barik J., Mishra S.S.	Harnessing leaf photosynthetic traits and antioxidant defence for multiple stress tolerance in three premium indigenous rice landraces of Jeypore tract of Odisha, India.	Funct. Plant Biol.	47(2)	99-111	2020		
48188	32054028	Castorina G., Consonni G.	The Role of Brassinosteroids in Controlling plant height in Poaceae: A Genetic Perspective.	Int J Mol Sci	21(4)		2020		
48189	32075588	Li X., Shahid M.Q., Wen M., Chen S., Yu H., Jiao Y., Lu Z., Li Y., Liu X.	Global identification and analysis revealed differentially expressed lncRNAs associated with meiosis and low fertility in autotetraploid rice.	BMC Plant Biol.	20(1)	82	2020		
48190	32099746	Amer Hamzah M., Mohd Kasim NA., Shamsuddin A., Mustafa N., Mohamad Rusli NI., Teh C.Y., Ho C.L.	Nucleotide variations of <i>9</i>-<i>cis</i>-<i>epoxycarotenoid dioxygenase 2</i> (<i>NCED2</i>) and pericarp coloration genes (<i>Rc</i> and <i>Rd</i>) from upland rice varieties.	3 Biotech	10(3)	105	2020		
48191	32094443	Sampangi-Ramaiah MH., Jagadheesh, Dey P., Jambagi S., Vasantha Kumari MM., Oelm?ller R., Nataraja K.N., Venkataramana Ravishankar K., Ravikanth G., Uma Shaanker R.	An endophyte from salt-adapted Pokkali rice confers salt-tolerance to a salt-sensitive rice variety and targets a unique pattern of genes in its new host.	Sci Rep	10(1)	3237	2020		
48192	32042046	Calayugan M.I.C., Formantes A.K., Amparado A., Descalsota-Empleo GI., Nha C.T., Inabangan-Asilo MA., Swe Z.M., Hernandez J.E., Borromeo T.H., Lalusin A.G., Mendioro M.S., Diaz M.G.Q., Vi?a CBD., Reinke R., Swamy B.P.M.	Genetic Analysis of Agronomic Traits and Grain Iron and Zinc Concentrations in a Doubled Haploid Population of Rice (Oryza sativa L.).	Sci Rep	10(1)	2283	2020		
48193	32070909	Xu N., Yu B., Chen R., Li S., Zhang G., Huang J.	OsNAR2.2 plays a vital role in the root growth and development by promoting nitrate uptake and signaling in rice.	Plant Physiol. Biochem.	149	159-169	2020		
48194	32089979	Tiwari M., Srivastava S., Singh P.C., Mishra A.K., Chakrabarty D.	Functional characterization of tau class glutathione-<i>S</i>-transferase in rice to provide tolerance against sheath blight disease.	3 Biotech	10(3)	84	2020		
48195	32074964	Hsu Y.C., Chiu C.H., Yap R., Tseng Y.C., Wu Y.P.	Pyramiding Bacterial Blight Resistance Genes in Tainung82 for Broad-Spectrum Resistance Using Marker-Assisted Selection.	Int J Mol Sci	21(4)		2020		
48196	32008119	Muniandy K., Tan M.H., Shehnaz S., Song B.K., Ayub Q., Rahman S.	Cytosine methylation of rice mitochondrial DNA from grain and leaf tissues.	Planta	251(2)	57	2020		
48197	32045562	Encabo J.R., Macalalad-Cabral RJA., Matres J.M.K., Coronejo SCTP., Jonson G.B., Kishima Y., Henry A., Choi I.R.	Infection with an asymptomatic virus in rice results in a delayed drought response.	Funct. Plant Biol.	47(3)	239-249	2020		
48198	32120887	Suganami M., Suzuki Y., Kondo E., Nishida S., Konno S., Makino A.	Effects of Overproduction of Rubisco activase on Rubisco Content in Transgenic Rice Grown at Different N Levels.	Int J Mol Sci	21(5)		2020		
48199	32098377	Weng H., Tian Y., Wu N., Li X., Yang B., Huang Y., Ye D., Wu R.	Development of a Low-Cost Narrow Band Multispectral Imaging System Coupled with Chemometric Analysis for Rapid Detection of Rice False Smut in Rice Seed.	Sensors (Basel)	20(4)		2020		
48200	32075264	Meng W.L., Zhao M.J., Yang X.B., Zhang A.X., Wang N.N., Xu Z.S., Ma J.	Examination of Genomic and Transcriptomic Alterations in a Morphologically Stable Line, MU1, Generated by Intergeneric Pollination.	Genes (Basel)	11(2)		2020		
48201	32075002	Fukushima A., Kuroha T., Nagai K., Hattori Y., Kobayashi M., Nishizawa T., Kojima M., Utsumi Y., Oikawa A., Seki M., Sakakibara H., Saito K., Ashikari M., Kusano M.	Metabolite and Phytohormone Profiling Illustrates Metabolic Reprogramming as an Escape Strategy of Deepwater Rice during Partially Submerged Stress.	Metabolites	10(2)		2020		
48202	32032713	Jin Q., Xu X.	Microstructure, gelatinization and pasting properties of rice starch under acid and heat treatments.	Int. J. Biol. Macromol.	149	1098-1108	2020		
48203	32234229	Zhao Q., Ye Y., Han Z., Zhou L., Guan X., Pan G., Asad M.A., Cheng F.	SSIIIa-RNAi suppression associated changes in rice grain quality and starch biosynthesis metabolism in response to high temperature.	Plant Sci.	294	110443	2020		
48204	32062985	Banerjee A., Hazra A., Das S., Sengupta C.	Groundwater inhabited <i>Bacillus</i> and <i>Paenibacillus</i> strains alleviate arsenic-induced phytotoxicity of rice plant.	Int J Phytoremediation		1-11	2020		
48205	31701134	Deng W., Li R., Xu Y., Mao R., Chen S., Chen L., Chen L., Liu Y.G., Chen Y.	A lipid transfer protein variant with a mutant eight-cysteine motif causes photoperiod- and thermo-sensitive dwarfism in rice.	J. Exp. Bot.	71(4)	1294-1305	2020	PTD1	OsLTP1.2, OsLtpI.2, OsPTD1, Psd1
48206	32085735	Ghaleb M.A.A., Li C., Shahid M.Q., Yu H., Liang J., Chen R., Wu J., Liu X.	Heterosis analysis and underlying molecular regulatory mechanism in a wide-compatible neo-tetraploid rice line with long panicles.	BMC Plant Biol.	20(1)	83	2020		
48207	32081273	Li Q.F., Zhou Y., Xiong M., Ren X.Y., Han L., Wang J.D., Zhang C.Q., Fan X.L., Liu Q.Q.	Gibberellin recovers seed germination in rice with impaired brassinosteroid signalling.	Plant Sci.	293	110435	2020		
48208	32108430	Yu Y.L., Zhang M.T., Huo Y., Tang J.L., Liu Q., Chen X.Y., Fang R.X., Zhang L.L.	Laodelphax striatellus Atg8 facilitates Rice stripe virus infection in an autophagy-independent manner.	Insect Science			2020		
48209	32112146	Wang Y., Zhai L., Chen K., Shen C., Liang Y., Wang C., Zhao X., Wang S., Xu J.	Natural Sequence Variations and Combinations of GNP1 and NAL1 Determine the grain number per Panicle in Rice.	Rice (N Y)	13(1)	14	2020	GNP1,NAL1	GA20OX1, OsGA20ox1, 20ox1, GA20ox-1, ga20ox1, Os20ox, C20OX2, OsGA20ox2, OsGA20ox-1, GA20ox1, OsGNP1,nal1, cul1, GPS, SPIKE, SPIKE/LSCHL4/NAL1/GPS, SPIKE/NAL1, LSCHL4, OsNAL1
48210	32022972	Xu Z., Zhang J., Cheng X., Tang Y., Gong Z., Gu M., Yu H.	COM1, a factor of alternative non-homologous end joining, lagging behind the classic non-homologous end joining pathway in rice somatic cells.	Plant J.			2020		
48211	32092577	Tefera W., Liu T., Lu L., Ge J., Webb S.M., Seifu W., Tian S.	Micro-XRF mapping and quantitative assessment of Cd in rice (Oryza sativa L.) roots.	Ecotoxicol. Environ. Saf.	193	110245	2020		
48212	31940265	Onyango D.A., Entila F., Egdane J., Pacleb M., Katimbang M.L., Dida M.M., Ismail A.M., Drame K.N.	Mechanistic understanding of iron toxicity tolerance in contrasting rice varieties from Africa: 2. Root oxidation ability and oxidative stress control.	Funct. Plant Biol.	47(2)	145-155	2020		
48213	32070437	Xu M., Li X., Mo X., Tu S., Cui Y., Yang D.	Studies on the cold tolerance of ratoon 'Chaling' common wild rice.	Biol. Res.	53(1)	8	2020		
48214	31898812	Sun L., Zou X., Jiang M., Wu X., Chen Y., Wang Q., Wang Q., Chen L., Wu Y.	The crystal structure of the TCP domain of PCF6 in Oryza?sativa L. reveals an RHH-like fold.	FEBS Lett.	594(8)	1296-1306	2020		
48215	32171089	Oono Y., Ichida H., Morita R., Nozawa S., Satoh K., Shimizu A., Abe T., Kato H., Hase Y.	Genome sequencing of ion-beam-induced mutants facilitates detection of candidate genes responsible for phenotypes of mutants in rice.	Mutat. Res.	821	111691	2020		
48216	32081870	Mmbando G.S., Teranishi M., Hidema J.	Very high sensitivity of African rice to artificial ultraviolet-B radiation caused by genotype and quantity of cyclobutane pyrimidine dimer photolyase.	Sci Rep	10(1)	3158	2020		
48217	32088439	Syu C.H., Chen P.W., Huang C.C., Lee D.Y.	Accumulation of gallium (Ga) and indium (In) in rice grains in Ga- and In-contaminated paddy soils.	Environ. Pollut.	261	114189	2020		
48218	32108903	Li W., Du J., Feng H., Wu Q., Xu G., Shabala S., Yu L.	Function of NHX-type transporters in improving rice tolerance to aluminum stress and soil acidity.	Planta	251(3)	71	2020		
48219	32213379	Xiaomei W., Rongrong K., Ting Z., Yuanyuan G., Jianlong X., Zhongze P., Gangseob L., Dongzhi L., Yanjun D.	A DEAD-box RNA helicase tcd33 that confers chloroplast development in rice at seedling stage under cold stress.	J. Plant Physiol.	248	153138	2020		
48220	32072745	Campos-Soriano L., Bund? M., Bach-Pages M., Chiang S.F., Chiou T.J., San Segundo B.	Phosphate excess increases susceptibility to pathogen infection in rice.	Mol. Plant Pathol.	21(4)	555-570	2020		
48221	32143117	Jia X., Yu L., Tang M., Tian D., Yang S., Zhang X., Traw M.B.	Pleiotropic changes revealed by in situ recovery of the semi-dwarf gene sd1 in rice.	J. Plant Physiol.	248	153141	2020		
48222	31917861	Wang C., Chen S., Dong Y., Ren R., Chen D., Chen X.	Chloroplastic Os3BGlu6 contributes significantly to cellular ABA pools and impacts drought tolerance and photosynthesis in rice.	New Phytol.	226(4)	1042-1054	2020		
48223	32040701	Yin X., van der Putten PEL., Belay D., Struik P.C.	Using photorespiratory oxygen response to analyse leaf mesophyll resistance.	Photosyn. Res.	144(1)	85-99	2020		
48224	32056019	Han B., Ma X., Cui D., Wang Y., Geng L., Cao G., Zhang H., Han L.	Comprehensive Evaluation and Analysis of the Mechanism of cold tolerance Based on the Transcriptome of Weedy Rice Seedlings.	Rice (N Y)	13(1)	12	2020		
48225	32019504	Pradhan S.K., Pandit E., Pawar S., Naveenkumar R., Barik S.R., Mohanty S.P., Nayak D.K., Ghritlahre S.K., Sanjiba Rao D., Reddy J.N., Patnaik S.S.C.	Linkage disequilibrium mapping for grain Fe and Zn enhancing QTLs useful for nutrient dense rice breeding.	BMC Plant Biol.	20(1)	57	2020		
48226	32109583	Gu Y., Liang C.	Responses of antioxidative enzymes and gene expression in Oryza sativa L and Cucumis sativus L seedlings to microcystins stress.	Ecotoxicol. Environ. Saf.	193	110351	2020		
48227	32042156	Joly-Lopez Z., Platts A.E., Gulko B., Choi J.Y., Groen S.C., Zhong X., Siepel A., Purugganan M.D.	An inferred fitness consequence map of the rice genome.	Nat Plants	6(2)	119-130	2020		
48228	32041548	Tan J., Wu Y., Guo J., Li H., Zhu L., Chen R., He G., Du B.	A combined microRNA and transcriptome analyses illuminates the resistance response of rice against brown planthopper.	BMC Genomics	21(1)	144	2020		
48229	32029818	Wada H., Hatakeyama Y., Nakashima T., Nonami H., Erra-Balsells R., Hakata M., Nakata K., Hiraoka K., Onda Y., Nakano H.	On-site single pollen metabolomics reveals varietal differences in phosphatidylinositol synthesis under heat stress conditions in rice.	Sci Rep	10(1)	2013	2020		
48230	31899547	Liu J., Chen J., Xie K., Tian Y., Yan A., Liu J., Huang Y., Wang S., Zhu Y., Chen A., Xu G.	A mycorrhiza-specific H+ -ATPase is essential for arbuscule development and symbiotic phosphate and nitrogen uptake.	Plant Cell Environ.	43(4)	1069-1083	2020		
48231	32060661	Qu P., Shi J., Chen T., Chen K., Shen C., Wang J., Zhao X., Ye G., Xu J., Zhang L.	Construction and integration of genetic linkage maps from three multi-parent advanced generation inter-cross populations in rice.	Rice (N Y)	13(1)	13	2020		
48232	31667503	Wang B., Wei H., Zhang H., Zhang W.H.	Enhanced accumulation of gibberellins rendered rice seedlings sensitive to ammonium toxicity.	J. Exp. Bot.	71(4)	1514-1526	2020		
48233	31846000	Melandri G., Prashar A., McCouch S.R., van der Linden G., Jones H.G., Kadam N., Jagadish K., Bouwmeester H., Ruyter-Spira C.	Association mapping and genetic dissection of drought-induced canopy temperature differences in rice.	J. Exp. Bot.	71(4)	1614-1627	2020		
48234	32040640	Li P., Zhou H., Yang H., Xia D., Liu R., Sun P., Wang Q., Gao G., Zhang Q., Wang G., He Y.	Genome-Wide Association Studies Reveal the Genetic Basis of Fertility Restoration of CMS-WA and CMS-HL in xian/indica and aus Accessions of Rice (Oryza sativa L.).	Rice (N Y)	13(1)	11	2020		
48235	32087244	Gouda G., Gupta M.K., Donde R., Kumar J., Parida M., Mohapatra T., Dash S.K., Pradhan S.K., Behera L.	Characterization of haplotypes and single nucleotide polymorphisms associated with Gn1a for high grain number formation in rice plant.	Genomics	112(3)	2647-2657	2020		
48236	32113108	Yang J., Zhao C., Yang J., Wang J., Li Z., Wan X., Guo G., Lei M., Chen T.	Discriminative algorithm approach to forecast Cd threshold exceedance probability for rice grain based on soil characteristics.	Environ. Pollut.	261	114211	2020		
48237	32205927	Theerawitaya C., Tisarum R., Samphumphuang T., Takabe T., Cha-Um S.	Expression levels of the Na+/K+ transporter <i>OsHKT2;1</i> and vacuolar Na+/H+ exchanger <i>OsNHX1</i>, Na enrichment, maintaining the photosynthetic abilities and growth performances of indica rice seedlings under salt stress.	Physiol Mol Biol Plants	26(3)	513-523	2020		
48238	32041193	Katara J.L., Verma R.L., Parida M., Ngangkham U., Molla K.A., Barbadikar K.M., Mukherjee M., C P., Samantaray S., Ravi N.R., Singh O.N., Mohapatra T.	Differential Expression of Genes at Panicle Initiation and Grain Filling Stages Implied in Heterosis of Rice Hybrids.	Int J Mol Sci	21(3)		2020		
48239	32072700	Wang F., Yano K., Nagamatsu S., Inari-Ikeda M., Koketsu E., Hirano K., Aya K., Matsuoka M.	Genome-wide expression quantitative trait locus studies facilitate isolation of causal genes controlling panicle structure.	Plant J.			2020		
48240	32046090	Vu M.H., Iswanto A.B.B., Lee J., Kim J.Y.	The Role of Plasmodesmata-Associated Receptor in Plant Development and Environmental Response.	Plants (Basel)	9(2)		2020		
48241	32072456	Quero G., Bonnecarr?re V., Simondi S., Santos J., Fern?ndez S., Gutierrez L., Garaycochea S., Borsani O.	Genetic architecture of photosynthesis energy partitioning as revealed by a genome-wide association approach.	Photosyn. Res.			2020		
48242	32025935	Shim K.C., Kim S.H., Lee H.S., Adeva C., Jeon Y.A., Luong N.H., Kim W.J., Akhtamov M., Park Y.J., Ahn S.N.	Characterization of a New qLTG3-1 Allele for Low-temperature Germinability in Rice?from the?Wild Species Oryza rufipogon.	Rice (N Y)	13(1)	10	2020		
48243	32154343	Sarangi S., Mandal C., Dutta S., Mukherjee P., Mondal R., Kumar S.P.J., Choudhury P.R., Singh V.P., Tripathi D.K., Mandal A.B.	Data on optimization of microprojectile bombardment parameters in development of salinity tolerant transgenic lines.	Data Brief	29	105305	2020		
48244	32092408	Dong M., Gong Y., Guo J., Ma J., Li S., Li T.	Optimization of production conditions of rice alpha-galactosidase II displayed on yeast cell surface.	Protein Expr. Purif.	171	105611	2020		
48245	32328244	Graziano S., Marmiroli N., Gull? M.	Proteomic analysis of reserve proteins in commercial rice cultivars.	Food Sci Nutr	8(4)	1788-1797	2020		
48246	32059004	Hamazaki K., Iwata H.	RAINBOW: Haplotype-based genome-wide association study using a novel SNP-set method.	PLoS Comput. Biol.	16(2)	e1007663	2020		
48247	32053477	Wu J.Y., Sun Y.N., Zhou X.J., Zhang C.Q.	A New Mutation Genotype of K218T in Myosin-5 Confers Resistance to Phenamacril in Rice Bakanae Disease in the Field.	Plant Dis.	104(4)	1151-1157	2020		
48248	32112739	Toda K., Tsukayama I., Nagasaki Y., Konoike Y., Tamenobu A., Ganeko N., Ito H., Kawakami Y., Takahashi Y., Miki Y., Yamamoto K., Murakami M., Suzuki-Yamamoto T.	Red-kerneled rice proanthocyanidin inhibits arachidonate 5-lipoxygenase and decreases psoriasis-like skin inflammation.	Arch. Biochem. Biophys.		108307	2020		
48249	32117677	Kok A.D., Wan Abdullah WMAN., Tan N.P., Ong-Abdullah J., Sekeli R., Wee C.Y., Lai K.S.	Growth promoting effects of Pluronic F-68 on callus proliferation of recalcitrant rice cultivar.	3 Biotech	10(3)	116	2020		
48250	32089661	Kim H.S., Do K.S., Park J.H., Kang W.S., Lee Y.H., Park E.W.	Application of Numerical Weather Prediction Data to Estimate Infection Risk of bacterial grain rot of Rice in Korea.	Plant Pathol. J.	36(1)	54-66	2020		
48251	32092859	Zhao Y., Han Q., Ding C., HUANG Y., Liao J., Chen T., Feng S., Zhou L., Zhang Z., Chen Y., Yuan S., Yuan M.	Effect of Low Temperature on Chlorophyll Biosynthesis and Chloroplast Biogenesis of Rice Seedlings during Greening.	Int J Mol Sci	21(4)		2020		
48252	32079255	Yuan S., Wang Y., Zhang C., He H., Yu S.	Genetic Dissection of seed dormancy using Chromosome Segment Substitution Lines in Rice (<i>Oryza sativa</i> L.).	Int J Mol Sci	21(4)		2020		
48253	32255931	Adak S., Datta S., Bhattacharya S., Ghose T.K., Lahiri Majumder A.	Diversity analysis of selected rice landraces from West Bengal and their linked molecular markers for salinity tolerance.	Physiol Mol Biol Plants	26(4)	669-682	2020		
48254	32111163	Cui Y., Jiang N., Xu Z., Xu Q.	Heterotrimeric G protein are involved in the regulation of multiple agronomic traits and stress tolerance in rice.	BMC Plant Biol.	20(1)	90	2020	PXLG4,RGG2,RGG1,GGC2,LK3,D1,PXLG2,RGB1,PXLG3,PXLG1,DEP1	OsPXLG4, XLG3, OsXLG3,OsRGG2,OsRGG1,OsGGC2,lk3(t), lk3(t)*, SG3, GS3, SG3-GS3, OsGW3, OsGS3, RGG3/GS3/Mi/OsGGC1, RGG3, Mi, OsGGC1, GGC1, OsSYL3, SYL3, TT2, OsTT2,d1, GPA1, GA1, OsGA1, RGA1, dwf1, XA7, RGA, D1/RGA1, D89, TGW5, OsTGW5, SRG5, OsSRG5,OsPXLG2, XLG2, OsXLG2,OsWD40-80, RGbeta1, OsRGB1,  OsDWD38, DWD38,OsPXLG3, XLG4, OsXLG4,OsPXLG1, XLG1, OsXLG1,OsDEP1, EP, qPE9-1, DN1, DEP1/DN1/qPE9-1, qNGR9, qDEP1, RGG4/DEP1/DN1/qPE9-1/OsGGC3, RGG4, OsDN1, OsGGC3, GGC3
48255	32072132	Luginbuehl L.H., El-Sharnouby S., Wang N., Hibberd J.M.	Fluorescent reporters for functional analysis in rice leaves.	Plant Direct	4(2)	e00188	2020		
48256	32013862	Li X., Wei Y., Li J., Yang F., Chen Y., Chen Y., Guo S., Sha A.	Identification of QTL TGW12 responsible for grain weight in rice based on recombinant inbred line population crossed by wild rice (Oryza minuta) introgression line K1561 and indica rice G1025.	BMC Genet.	21(1)	10	2020		
48257	32050528	Lam D.T., Ichitani K., Henry R.J., Ishikawa R.	Molecular and Morphological Divergence of Australian Wild Rice.	Plants (Basel)	9(2)		2020		
48258	32066006	Du J., Wang T., Zhou Q., Hu X., Wu J., Li G., Li G., Hou F., Wu Y.	Graphene oxide enters the rice roots and disturbs the endophytic bacterial communities.	Ecotoxicol. Environ. Saf.	192	110304	2020		
48259	31990076	Yamori W., Kusumi K., Iba K., Terashima I.	Increased stomatal conductance induces rapid changes to photosynthetic rate in response to naturally fluctuating light conditions in rice.	Plant Cell Environ.	43(5)	1230-1240	2020		
48260	32070060	Fang J., Wan C., Wang W., Ma L., Wang X., Cheng C., Zhou J., Qiao Y., Wang X.	Engineering Herbicide-Tolerance Rice Expressing an Acetohydroxyacid Synthase with a Single Amino Acid Deletion.	Int J Mol Sci	21(4)		2020		
48261	32033011	Bhuyan MHMB., Parvin K., Mohsin S.M., Mahmud J.A., Hasanuzzaman M., Fujita M.	Modulation of Cadmium Tolerance in Rice: Insight into Vanillic Acid-Induced Upregulation of Antioxidant Defense and Glyoxalase Systems.	Plants (Basel)	9(2)		2020		
48262	32112422	Xu J., Henry A., Sreenivasulu N.	Rice yield formation under high day and night temperatures-A prerequisite to ensure future food security.	Plant Cell Environ.			2020		
48263	32087618	Zhang N., Yang J., Fang A., Wang J., Li D., Li Y., Wang S., Cui F., Yu J., Liu Y., Peng Y.L., Sun W.	The essential effector scre1 in Ustilaginoidea virens suppresses rice immunity via a small peptide region.	Mol. Plant Pathol.	21(4)	445-459	2020		
48265	32129897	Yang J., Chang Y., Qin Y., Chen D., Zhu T., Peng K., Wang H., Tang N., Li X., Wang Y., Liu Y., Li X., Xie W., Xiong L.	A lamin-like protein OsNMCP1 regulates drought resistance and root growth through chromatin accessibility modulation by interacting with a chromatin remodeller OsSWI3C in rice.	New Phytol.	227(1)	65-83	2020	NMCP1,SWI3C,NAC122,ERF48,SGL,ONAC2,BZIP23	OsNMCP1,OsSWI3C, OsCHB705, CHB705, OsSWI3C1, SWI3C1,OsNAC10, NAC10, ONAC122, NAC122, OsSNAC10, SNAC10,OsERF#048, OsERF048, OsERF48, AP2/EREBP#170, AP2/EREBP170, OsDRAP1, DRAP1, OsERF48/OsDRAP1,OsSGL,SNAC1, snac1, OsNAC9, ONAC002, ONAC2, ONAC033, ONAC33, ONAC043, ONAC43, ONAC044, ONAC44, OsNAC19, NAC19, SNAC1/ONAC002, OsSNAC1, OsNAC9, OsNAC1,OsbZIP23, OsAREB1, OsABF2, Osbzip23, OsAREB2, OsZIP23, ZIP23
48266	32266647	Zhang Y., Chen Q., Zhu G., Zhang F., Fang X., Ren H., Jun'e Jiang, Yang F., Zhang D., Chen F.	CHR721, interacting with OsRPA1a, is essential for both male and female reproductive development in rice.	Plant Mol. Biol.	103(4-5)	473-487	2020	RPA1A,CHR721	OsRPA70a, OsRPA1a, RPA1a,OsCHR721, SMARCAL1, OsSMARCAL1
48267	32275888	Tang Y., Chun-Chun Gao, Gao Y., Yang Y., Shi B., Jia-Li Yu, Lyu C., Bao-Fa Sun, Hai-Lin Wang, Xu Y., Yun-Gui Yang, Chong K.	OsNSUN2-Mediated 5-Methylcytosine mRNA Modification Enhances Rice Adaptation to High Temperature.	Dev. Cell	53(3)	272-286.e7	2020	NSUN4,LCYB,YLC2,NSUN6,NSUN2,GLYI4,ROX2,NSUN8,NSUN7,NDPK4,PRX55,PAL1,NSUN5,NSUN1	OsNSUN4,OsLCYbeta, OsLYCb, OsLCY, beta-OsLCY, beta-LCY,OsHO2, HO2, OsHO-2, HO-2,OsNSUN6,OsNSUN2,OsGLYI4,OsROX2, OsNSUN3, NSUN3,OsNSUN8,OsNSUN7,OsNDPK4,prx55, OsPRX55,OsPAL, Pal1*, Pal1, PAL, Pal_1, PalI, PAL2, OsPAL01, PAL01, OSPAL, CP-1, GP-1, OsPAL1, PAL3, OsPAL3,OsNSUN5,OsNSUN1
48268	32284546	Zhang X., Zhao G., Tan Q., Yuan H., Betts N., Zhu L., Zhang D., Liang W.	Rice pollen aperture formation is regulated by the interplay between OsINP1 and OsDAF1.	Nat Plants	6(4)	394-403	2020	AP1,INP1	LECRK-S.7, OsLecRK-S.7, OsDAF1, DAF1, OsLecRK5, LecRK5, OsAP1,OsINP1
48269	32297039	Lv J., Shang L., Chen Y., Han Y., Yang X., Xie S., Bai W., Hu M., Wu H., Lei K., Ya'nan Yang, Ge S., Hai Phuong Trinh, Zhang Y., Guo L., Wang Z.	OsSLC1 Encodes a Pentatricopeptide Repeat Protein Essential for Early Chloroplast Development and Seedling Survival.	Rice (N Y)	13(1)	25	2020	PETB,_,RPS16,_,NDHA,ATPF,PETD,_,YCF3,RPL16	petB, OsPETB,trnK(UUU), trnK, trnK-UUU,rps16,OsSLC1, SLC1,ndhA,atpF, OsatpF,petD, OsPETD,trnV, trnV(UAC), trnV-UAC,ORF170, ycf3, IRF170, ycf3-1, ycf3-2,rpl16
48270	32303659	Lyu J., Wang D., Duan P., Liu Y., Huang K., Zeng D., Zhang L., Dong G., Li Y., Xu R., Zhang B., Huang X., Li N., Wang Y., Qian Q., Li Y.	Control of grain size and Weight by the GSK2-LARGE1/OML4 Pathway in Rice.	Plant Cell	32(6)	1905-1918	2020	EHD6	OML4, OsML4, ML4, OsEHD6
48271	12068117	Kasahara M., Trevor E Swartz, Margaret A Olney, Onodera A., Mochizuki N., Fukuzawa H., Asamizu E., Tabata S., Kanegae H., Takano M., John M Christie, Nagatani A., Winslow R Briggs	Photochemical properties of the flavin mononucleotide-binding domains of the phototropins from Arabidopsis, rice, and Chlamydomonas reinhardtii.	Plant Physiol.	129(2)	762-73	2002		
48272	10845454	H Kanegae, M Tahir, F Savazzini, K Yamamoto, M Yano, T Sasaki, T Kanegae, M Wada, M Takano	Rice NPH1 homologues, OsNPH1a and OsNPH1b, are differently photoregulated.	Plant Cell Physiol.	41(4)	415-23	2000	NPH1B,NPH1A	PHOT2, OsPHOT2, OsNPH1b, OsAGC9, AGC9,OsNPH1a, OsAGC22, AGC22
48273	32327539	Liu H., Ren D., Jiang L., Li X., Yao Y., Mi L., Chen W., Mo A., Jiang N., Yang J., Chen P., Ma H., Luo X., Lu P.	A Natural Variation in PLEIOTROPIC DEVELOPMENTAL DEFECTS Uncovers a Crucial Role for Chloroplast tRNA Modification in Translation and Plant Development.	Plant Cell			2020	EXPB2,EXPA28,PSAB,EXPA27,EXPA13,EXPA11,EXPA24,EXPA1,EXPA9,EXPB8,RBCL,EXPA17,RPOB,EXPB6,RPOA,RPS2,RPS3,RPL16,EXPB5,PDD,EXPA8,EXPA18,EXPA3,RPOC2,EXPA33	OsEXPB2, OsaEXPb1.9, EXPb1.9,,PsaB, psaB, PsAA2, psaA2,OsEXPA27,OsEXPA13, OsEXP13, osaEXPa1.13,OsEXPA11, OsEXP11, osaEXPa1.25,OsEXPA24, OsEXP24, osaEXPa1.10,OsEXP1, EXPA1, OsEXPA1, OsaEXPa1.16, RiExA,OsEXPA9, OsEXP9, osaEXPa1.19,,rbcL, rbcA, OsrbcL,OsEXPA17, OsEXP17, osaEXPa1.31,rpoB, RpoB, Rpobeta,OsEXPB6, osaEXPb1.8, EXPb1.8,rope, rpoalpha, Rpoalpha, rope, RpoA ,rps2,rps3,rpl16,OsEXPB5, osaEXPb1.19,OsPDD, TCD8, OsTCD8,OsEXPA8, OsEXP8, osaEXPa1.17,OsEXPA18, OsEXP18, osaEXPa1.3,OsEXP3 (Os-EXP3), EXPA3, OsEXP3, Os-EXP3, OsaEXPa1.18, RiExD, Os-EXPA3, OsEXPA3,rpoC2, RPO beta", RPObeta",OsEXPA33
48274	32337581	Tu B., Tao Z., Wang Y., Hu L., Li J., Zheng L., Zhou Y., Li J., Xue F., Zhu X., Yuan H., Chen W., Qin P., Ma B., Li S.	Membrane-associated xylanase-like protein OsXyn1 is required for normal cell wall deposition and plant development in rice.	J. Exp. Bot.			2020	SS	OsXYN1,  OsXyn1, XYN1, OsSS, OsMORE1m, MORE1m
48275	32376763	Hu L., Tu B., Yang W., Yuan H., Li J., Guo L., Zheng L., Chen W., Zhu X., Wang Y., Qin P., Ma B., Li S.	Mitochondria-Associated pyruvate kinase Complexes Regulate Grain Filling in Rice.	Plant Physiol.	183(3)	1073-1087	2020	SUT4,SUT5,PHO1,XA13,SWEET15,GBSSII,AGPL2,BT1-1,SSI,WX1,ALK,AGPS2,GIF1,SUT1,PK1,PK3,PK4	OsSUT4(t), OsSUT4,OsSUT5(t), OsSUT5Z, OsSUT5,Pho1, OsPho1, OsPHOL, PHOL, OsPHOI, PHOI,xa13, Xa13, Os8N3, Os-8N3, 8N3, OsSWEET11, SWEET11, OsSWEET11/Xa13, Xa13/Os8N3/SWEET11, Os8N3/Xa13, OsSWEET11/Os8N3, OsSWEET11a, SWEET11a,OsSWEET15,GBSS2, OsGBSSII, OsGBSS2,OsAGPL2, osagpl2, APL2, OsAPL2, AGPiso, sh2, Sh2, GIF2, GAS1 ,OsBT1-1, OsEnS-29, OsBT1, OsBt1, BT1, Bt1, OsBt1-1, shr3, OsBT1-2, BT1-2,OsSSI, SSS 1, SSS1, SS1, OsSS1, SSSI, OsSSSI,wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx,alk, SSII-3, OsSSIIa, OsSSII-3, SSIIa, SSS2A, OsSSIIaChr6, SS2a,OsAGPS2a, AGPS2A, AGPS2B, OsAGPS2, osagps2, APS2, APS2a, APS2b, AGPS2a, APGS2b, OsAGPS2b, AGPP, GAS8, OsAPS2, OsAPS2a, OsAPS2b,gif1, CIN2, OsCIN2, OsGIF1, WB1, OsWB1, GIF1/OsCIN2,OsSUT1, OsSUT2,OsPK1,OsPK3, OsPK5, PK5,OsPK4
48276	32354878	Kamal Kumar Malukani, Ranjan A., Shiva Jyothi Hota, Hitendra Kumar Patel, Ramesh V Sonti	Dual Activities of Receptor-Like Kinase OsWAKL21.2 Induce Immune Responses.	Plant Physiol.	183(3)	1345-1363	2020	WAKL21.2 	OsWAKL21.2 
48277	0	Morita R., Ichida H., Ishii K., Hayashi Y., Abe H., Shirakawa Y., Ichinose K., Tsuneizumi K., Kazama T., Toriyama K., SATO T., Abe T.	LONG GRAIN 1: a novel gene that regulates grain length in rice	Molecular Breeding	39(139)		2019	LIN1	OsLIN1
48278	20561248	Bai W., Chern M., Ruan D., Canlas P.E., Sze-To WH., Ronald P.C.	Enhanced disease resistance and hypersensitivity to BTH by introduction of an NH1/OsNPR1 paralog.	Plant Biotechnol. J.	9(2)	205-15	2011	PR1A,BOP3,RSOSPR10,POX22.3,POX8.1,BOP1,NH3,BOP2,CHT1,NH2,NH1	OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1, OsPR1b, PR1alpha, OsPR1alpha,NH5, OsNH5, OsBOP3,  OsBTBA6, BTBA6,RSOsPR10, RsOsPR10a, OsPR10a, OsPR10alpha, OsPR10, PR10, OsBETV1, BETV1,POX22.3, OSPER, OsPOX, POX, Pir3, prx111, POX22, OsPOX1, POX1, OsPOX22.3, OsPR9, PR9,POX8.1, prx110, POX8,OsNPR5, NPR5, NH4, OsNH4, OsBOP1,  OsBTBA3, BTBA3,OsNPR3, OsNH3, NPR3, OsNPR3.1, OsNPR3.2, OsNPR3.3 ,  OsBTBA4, BTBA4, OsNPR4, NPR4,OsNH5, NH5, OsBOP2,  OsBTBA5, BTBA5,Cht1*(Chi1), Ch16, Cht1, CHT-1, CH16, RC24, OsChia1a, OsChia1, Chi1, Cht1*, Chi-1, Cht-1, Cht1, RCC1, OsCht-1, PR3, OsPR3,OsNH2, OsNPR2, NPR2, OsNPR2/NH2, DLN21, OsDLN21, PR2, OsNPR1, NPR1,  OsBTBA2, BTBA2, OsNPR3, NPR3,OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2, DLN5, OsDLN5,  OsBTBA1, BTBA1
48279	32206999	Ju Hee Kim, Sung Don Lim, Cheol Seong Jang	Oryza sativa drought-, heat-, and salt-induced RING finger protein 1 (OsDHSRP1) negatively regulates abiotic stress-responsive gene expression.	Plant Mol. Biol.	103(3)	235-252	2020		
48280	32129444	Wang C., Zheng L., Tang Z., Sun S., Jian Feng Ma, Xin-Yuan Huang, Fang-Jie Zhao	OASTL-A1 functions as a cytosolic cysteine synthase and affects arsenic tolerance in rice.	J. Exp. Bot.	71(12)	3678-3689	2020	ASTOL1,RCS3	RCS1, rcs1, OsOASTL-A2, OASTL-A2, OsASTOL1,rcs3, OsRCS3, OsOASTL-A1, OASTL-A1
48281	32184349	Zhao H., Ma B., Kai-Xuan Duan, Xin-Kai Li, Lu X., Cui-Cui Yin, Jian-Jun Tao, Wei W., Wan-Ke Zhang, Pei-Yong Xin, Sin Man Lam, Jin-Fang Chu, Guang-Hou Shui, Shou-Yi Chen, Jin-Song Zhang	The GDSL Lipase MHZ11 Modulates Ethylene Signaling in Rice Roots.	Plant Cell	32(5)	1626-1643	2020	ERF2,RAP2.8,CTR2,GELP64,ERS2,RR7,EIN2,EIL1A	OsWR4, WR4, OsERF#002, OsERF002, ERF002, OsERF2, AP2/EREBP#100, AP2/EREBP100,OsRAP2.8, NGAL1-1, OsNGAL1-1,OsCTR2,OsGELP64, OsGELP64a, OsGELP64b, MHZ11, OsMHZ11,OS-ERS2, OsERS2, OsERS2a, OsERS2b, OsERS2c,rr7, OsRR7, Rra5, OsRRA5,OsEIN2, MHZ7/OsEIN2, OsEIN2/MHZ7, MHZ7 ,EIL1, OsEIL1, EIL1a, OsEIL1a, MHZ6/OsEIL1, MHZ6, OsMHZ6
48282	32225072	Wang B., Zhong Z., Wang X., Han X., Yu D., Wang C., Song W., Zheng X., Chen C., Zhang Y.	Knockout of the <i>OsNAC006</i> Transcription Factor Causes Drought and Heat Sensitivity in Rice.	Int J Mol Sci	21(7)		2020	HDY1,ETR3,_,GNP1,BIN2,D61,ARF7A,AOS1,BZIP46,HPL3,ARF8	OsFdC2, FdC2, OsHDY1, PetF-2,OsETR3, OsERS4, OS-ETR3, OsETR3a, OsETR3b, PK2, OsPK2, OsETR2;1, ETR2;1,ONAC003, ONAC3, ONAC016, ONAC16, SNAC3, OsSND3, SND3, OsNAC006, NAC006, ONAC066,GA20OX1, OsGA20ox1, 20ox1, GA20ox-1, ga20ox1, Os20ox, C20OX2, OsGA20ox2, OsGA20ox-1, GA20ox1, OsGNP1,GSK2, Os GSK2, OsGSK2, Os BIN2, OsBIN2, BIN2/GSK2, OsSK22/OsGSK7, OsSK22, OsGSK7, SK22, GSK7, OsSK22/GSK2 ,d61*, dwf42, d61, OsBRI1, OSBRI1, BRI1, Os BRI1, Osbri1, OsBRKq1, BRKq1,OsARF7a, OsARF19, ARF19, OsARF7,OsAOS, OsAOS1, CYP74A1, OsAOS2, AOS2,ABL1, bZIP46, OsABL1, OsbZIP46, OsAREB8, OsABF2, ABF2, OsABF3, ABF3, OsbZIP46CA1, OsZIP46, ZIP46, OsbZIP46/OsABF2,OsHPL3, CYP74B2, OsCYP74B2,OsARF8, OsARF12, ARF12
48283	32286394	Jiang G., Yin D., Shi Y., Zhou Z., Li C., Liu P., Jia Y., Wang Y., Liu Z., Yu M., Wu X., Zhai W., Zhu L.	OsNPR3.3-dependent salicylic acid signaling is involved in recessive gene xa5-mediated immunity to rice bacterial blight.	Sci Rep	10(1)	6313	2020	NH1,NH3,XA5,BZIP83,NH2	OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2, DLN5, OsDLN5,  OsBTBA1, BTBA1,OsNPR3, OsNH3, NPR3, OsNPR3.1, OsNPR3.2, OsNPR3.3 ,  OsBTBA4, BTBA4, OsNPR4, NPR4,xa5, xa-5, Xa5, TFIIAy, OsTFIIAgamma5, TFIIAgamma5, OsTFIIAgamma5/Xa5,OsbZIP83, TGAL11, OsTGAL11, OsTGA2, TGA2,OsNH2, OsNPR2, NPR2, OsNPR2/NH2, DLN21, OsDLN21, PR2, OsNPR1, NPR1,  OsBTBA2, BTBA2, OsNPR3, NPR3
48284	32167575	Ruan B., Shang L., Zhang B., Hu J., Wang Y., Lin H., Zhang A., Liu C., Peng Y., Zhu L., Ren D., Shen L., Dong G., Zhang G., Zeng D., Guo L., Qian Q., Gao Z.	Natural variation in the promoter of TGW2 determines grain width and weight in rice.	New Phytol.	227(2)	629-640	2020	TGW2	OsFWL1, FWL1, OsTGW2, OsCNR1, CNR1, OsPCR3, PCR3, OsFWL3, FWL3
48285	32365409	Chuan-Lin Shi, Nai-Qian Dong, Guo T., Wang-Wei Ye, Jun-Xiang Shan, Hong-Xuan Lin	A quantitative trait locus GW6 controls rice grain size.and yield through the gibberellin pathway.	Plant J.			2020	GW6	OsGSR1, GSR1, OsGASR7, GASR7, OsGW6, OsGASR7/GW6
48286	32152790	Ye J., Ding W., Chen Y., Zhu X., Sun J., Zheng W., Zhang B., Zhu S.	A nucleoside diphosphate kinase gene Osndpk4 is involved in root development and defense responses in rice (Oryza sativa L.).	Planta	251(4)	77	2020	NDPK4	OsNDPK4
48287	32210132	Aya Kitajima-Koga, Baslam M., Hamada Y., Ito N., Taniuchi T., Takamatsu T., Oikawa K., Kaneko K., Mitsui T.	Functional Analysis of Rice Long-Chain Acyl-CoA Synthetase 9 (<i>OsLACS9</i>) in the Chloroplast Envelope Membrane.	Int J Mol Sci	21(6)		2020	AMY1A,LACS9,LACS7,LACS1,LACS3,LACS2,LACS4,_,LACS8,LACS5	Amy1A/C*(RAmy1A/C), alpha Amy7, AMY1.1, Amy1A, RAmy1A/C, Amy1A/C*, Amy1, Amy1A_C, OsAmy1A, alphaAmy7-C, RAmy1A, AmyI-1, OsAmyI-1, OsRamy1A,OsLACS1, LACS1, OsLACS9,OsLACS7,OsLACS1,OsLACS3,OsLACS2, OsLACS6, LACS6,OsLACS4,OsLACS2, LACS2,OsLACS8,OsLACS5
48288	32149461	Wang B., Fang R., Chen F., Han J., Yao-Guang Liu, Chen L., Zhu Q.	A novel CCCH-type zinc finger protein SAW1 activates OsGA20ox3 to regulate gibberellin homeostasis and anther development in rice.	J Integr Plant Biol			2020	GA20OX3,DCM1,GAMYB	OsGA20ox3, ga20ox3,OsDCM1, SAW1, OsSAW1,OsGAMYB, GAM1, OsGAMyb, Os-MYBGA, Os GAMYB, OsMYBGA, MYBGA, Os2R_MYB15, 2R_MYB15 
48289	32152046	Wang S.S., Chung C.L., Chen K.Y., Chen R.K.	A Novel Variation in the <i>FRIZZLE PANICLE</i> (<i>FZP</i>) Gene Promoter Improves grain number and Yield in Rice.	Genetics	215(1)	243-252	2020	FZP	fzp*, fzp, OsBD1, BD1, OsERF#078, OsERF078, OsERF78, ERF78, AP2/EREBP#133, AP2/EREBP133, BFL1, SGDP7, OsSGDP7
48290	32193205	Strable J.	Keeping the Ethylene Response Fluid: GDSL Lipase MHZ11 Modulates Sterol Levels and Ethylene Signaling in Rice Roots.	Plant Cell	32(5)	1352-1353	2020	ERS2,CTR2,GELP64	OS-ERS2, OsERS2, OsERS2a, OsERS2b, OsERS2c,OsCTR2,OsGELP64, OsGELP64a, OsGELP64b, MHZ11, OsMHZ11
48291	32540023	Lin F., Li S., Wang K., Tian H., Gao J., Zhao Q., Du C.	A leucine-rich repeat receptor-like kinase, OsSTLK, modulates salt tolerance in rice.	Plant Sci.	296	110465	2020	STLK	OsSTLK
48292	32217509	Hu F.Y., Wang K.J.	The STEME system: a novel tool for directed evolution <i>in vivo</i>.	Yi Chuan	42(3)	231-235	2020		
48293	32166467	Devi SJSR., Singh K., Umakanth B., Vishalakshi B., Rao K.V.S., Suneel B., Sharma S.K., Kadambari G.K.M., Prasad M.S., Senguttvel P., Syamaladevi D.P., Madhav M.S.	Identification and Characterization of a Large Effect QTL from Oryza glumaepatula Revealed Pi68(t) as Putative Candidate Gene for Rice Blast Resistance.	Rice (N Y)	13(1)	17	2020	PI68	Pi68(t), Pi68
48294	31811717	Fang C., Yang L., Chen W., Li L., Zhang P., Li Y., He H., Lin W.	MYB57 transcriptionally regulates MAPK11 to interact with PAL2;3 and modulate rice allelopathy.	J. Exp. Bot.	71(6)	2127-2141	2020	_,_,RTP,MYB57,CCA,C4H2,CAD,PAL1,HMGRIII,WHY1,WRKY66,_,WHY2,KS4	OsMPK20-3, MPK20-3, OsMAPK11, MAPK11,OsPAL05, PAL05, OsPAL3, PAL5, PAL3, OsPAL2;3, PAL2;3, OsPAL2-1, PAL2-1,OsRTP,OsMYB57,OsCCA,OsC4H, OsC4HL, C4H, OsC4H2,OsCAD, TPS16, OsTPS16,OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6,HMGR III, OsHMGRIII, Hmg3, HMGR3, HMGR 3, OsHMGR3, HMGR2, OsHMGR2, OsOMT,OsWHY1,OsWRKY66,H4,OsWHY2,OsKS4, KS4, KSL4, OsKSL4, DTS2, OsDTS2, OsTPS16, TPS16, TPS8, OsTPS8
48295	32197452	Seo H., Kim S.H., Lee B.D., Lim J.H., Lee S.J., An G., Paek N.C.	The Rice <i>Basic Helix-Loop-Helix 79</i> (<i>OsbHLH079</i>) Determines leaf angle and Grain Shape.	Int J Mol Sci	21(6)		2020	EXPA4,SG2,RLCK173,XTH28,BU1,XTH2,BRD1,BIN2,BZR1,D11,BLR1,ILI1,PIL13,EXPA7,EXPA6,EXPA3,GW2,DLT,D2,EXPA5,TGW6	OsEXP4 (Os-EXP4), OsEXPA4, OsEXP4, Os-EXP4, OsaEXPa1.22,OsSERK1, SERK1, OsBAK1, BAK1, OsSERK1/OsBAK1, OsBISERK1, BISERK1, OsSerk1, OsBAK1-1, 08SG2/OsBAK1, 08SG2, OsSG2,OsRLCK173, OsBSK3, BSK3,OsXTH28,ILI4, OsILI4 , OsBU1, BU1/ILI4, OsbHLH172, bHLH172,OsXTH2, XTR1, OsXTR1,brd1, OsDWARF, DWARF, OsBR6ox, BR6ox, CYP85A1, CYP85A4, OsDWF, CYP85A1/OsDWARF, OsBRD1, OsCYP85A1,GSK2, Os GSK2, OsGSK2, Os BIN2, OsBIN2, BIN2/GSK2, OsSK22/OsGSK7, OsSK22, OsGSK7, SK22, GSK7, OsSK22/GSK2 ,OsBZR1, Os BZR1, OsBES1-6, BES1-6,d11(d8), dwf10, d8, D11/CYP724B1, d11, CYP724B1, GNS4, OsD11, PMM1, OsPMM1, PMM1/D11, NBG4, OsCPB1, CPB1, CPB1/D11,OsbHLH079, OsbHLH79, bHLH079, bHLH79, OsBLR1, OsBCL2, BCL2,OsbHLH154, bHLH154, OsILI1,OsPIL1, OsPIL13, OsbHLH152, bHLH152, PIF7, OsPIF7, OsPIF4, PIF4, OsPIF1,OsEXPA7, EXP7, OsEXP7, OsaEXPa1.26,OsEXPA6, OsEXP6, osaEXPa1.24,OsEXP3 (Os-EXP3), EXPA3, OsEXP3, Os-EXP3, OsaEXPa1.18, RiExD, Os-EXPA3, OsEXPA3,OsGW2, OsRING429, RING429, GNL44, OsGNL44,dlt, OsGRAS32, OsDLT, OsDLT1, DTL1, OsGRAS-32, OsGRAS32, GRAS-32, GRAS32, SMOS2/DLT, SMOS2, OsSMOS2, OsGS6, GS6,d2, dwf2, CYP90D2, D2/CYP90D2, OsD2, SMG11, OsSMG11, D2/SMG11, OsD2a, OsD2b,OsEXPA5, OsEXP5, osaEXPa1.20,tgw6, OsSTRL7, STRL7, OsSSL4, SSL4
48296	32145381	Zhu M., Yan B., Hu Y., Cui Z., Wang X.	Genome-wide identification and phylogenetic analysis of rice FTIP gene family.	Genomics	112(5)	3803-3814	2020		
48297	32182761	Zhu M.D., Zhang M., Gao D.J., Zhou K., Tang S.J., Zhou B., Lv Y.M.	Rice <i>OsHSFA3</i> Gene Improves drought tolerance by Modulating Polyamine Biosynthesis Depending on Abscisic Acid and ROS Levels.	Int J Mol Sci	21(5)		2020	ADC3,HSFA3	OsADC3, OsADC1, ADC1,HSfA3, OsHsfA3, OsHsf-07, HSF07, OsHSF7, HSF7, DLN57, OsDLN57
48298	31782784	Fang J.C., Liu H.Y., Tsai Y.C., Chou W.L., Chang C.C., Lu C.A.	A CCR4 Association Factor 1, OsCAF1B, Participates in the alphaAmy3 mRNA Poly(A) Tail Shortening and Plays a Role in Germination and Seedling Growth.	Plant Cell Physiol.	61(3)	554-564	2020		
48299	32162142	Han R., He X., Pan X., Shi Q., Wu Z.	Enhancing xanthine dehydrogenase activity is an effective way to delay leaf senescence and increase rice yield.	Rice (N Y)	13(1)	16	2020	EAS1 ,UO,XDH1,SGR,RAB16B,WRKY23,WRKY53,GH27,ALN,PSE,PHS39	OsPAO, PAO, OsACD1, ACD1, OsEAS1, RCD2, OsRCD2,OsUO,OsXDH1, OsSAC3, SAC3,sgr(t), sgr, OsSGR, OsSgr, SGR1, OsSGR1,rab21, OsLEA28, OsRAB16D, OsRab16d, Rab16d, OsRAB16b, XERO1, OsXERO1, OsRD22, RD22,OsWRKY23,OsWRKY53, WRKY-53,OsGH27,OsALN,Pse (t), Pse,OsAAH, AAH, OsPHS39
48300	32161109	Wang F., Deng M., Chen J., He Q., Jia X., Guo H., Xu J., Liu Y., Zhang S., Shou H., Mao C.	CASEIN KINASE2-Dependent Phosphorylation of PHOSPHATE2 Fine-tunes Phosphate Homeostasis in Rice.	Plant Physiol.	183(1)	250-262	2020	PHO1;2,LTN1, CK2ALPHA3	OsPHO1;2, PHO1.2, OsPHO1.2, PHO1,LTN1, OsPHO2, PHO2.1, PHO2.2, PHO2, OsUBC35, UBC35,OsCK2alpha3, CK2alpha3, OsCKA2-3, CKA2-3
48301	32129570	Meng F., Yang C., Cao J., Chen H., Pang J., Zhao Q., Wang Z., Qing Fu Z., Liu J.	A bHLH transcription activator regulates defense signaling by nucleo-cytosolic trafficking in rice.	J Integr Plant Biol			2020	NH1,WRKY45,JAR1,EG2,SGR,BHLH9,RCCR1,BHLH6,AMTR1	OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2, DLN5, OsDLN5,  OsBTBA1, BTBA1,OsWRKY45, OsWRKY45-1, OsWRKY45-2, WRKY45-1, WRKY45-2,OsJAR1, OsGH3.5, GH3.5, OsGH3-5, GH3-5,OsTIFY3, OsJAZ10, OsJAZ 1, OsJAZ1, JAZ1, EG2/OsJAZ1, EG2, JAZ1/EG2,sgr(t), sgr, OsSGR, OsSgr, SGR1, OsSGR1,OsbHLH009, bHLH009, OsMYC2, MYC2,OsRCCR1, OsRCCR, RCCR,OsbHLH006, bHLH006, OsbHLH6, bHLH6, RERJ1, OsRERJ1, bHLH35,Osh36, OsH36, H36, OsAMTR1
48302	32203773	Verma P.K., Verma S., Tripathi R.D., Chakrabarty D.	A rice glutaredoxin regulate the expression of aquaporin genes and modulate root responses to provide arsenic tolerance.	Ecotoxicol. Environ. Saf.	195	110471	2020		
48303	32192842	Ochiai A., Ogawa K., Fukuda M., Suzuki M., Ito K., Tanaka T., Sagehashi Y., Taniguchi M.	Crystal structure of rice defensin OsAFP1 and molecular insight into lipid-binding.	J. Biosci. Bioeng.	130(1)	6-13	2020		
48304	32180062	Akama K., Akter N., Endo H., Kanesaki M., Endo M., Toki S.	An In Vivo Targeted Deletion of the Calmodulin-Binding Domain from Rice Glutamate Decarboxylase 3 (OsGAD3) Increases gamma-Aminobutyric Acid Content in Grains.	Rice (N Y)	13(1)	20	2020	GAD3	OsGAD3
48305	32245281	Khan M.S.S., Basnet R., Ahmed S., Bao J., Shu Q.	Mutations of <i>OsPLDa1</i> Increase Lysophospholipid Content and Enhance Cooking and Eating Quality in Rice.	Plants (Basel)	9(3)		2020	PAP2,EPT1,PLA2,PLDalpha1,PIPLC1,PDCT	OsPAP2,OsEPT1,OsPLA2,RPLD1, PLD1, OsPLDalpha1, OsC2DP2, C2DP2,OsPI-PLC1, PI-PLC1, OsPLC1, PLC1, OsC2DP69, C2DP69,OsPDCT
48306	32196121	Liu J., Shabala S., Zhang J., Ma G., Chen D., Shabala L., Zeng F., Chen Z.H., Zhou M., Venkataraman G., Zhao Q.	Melatonin improves rice salinity stress tolerance by NADPH oxidase-dependent control of the plasma membrane K+ transporters and K+ homeostasis.	Plant Cell Environ.			2020		
48307	32166371	Zhou H., Wang X., Mo Y., Li Y., Yan L., Li Z., Shu W., Cheng L., Huang F., Qiu Y.	Genetic analysis and fine mapping of the gall midge resistance gene Gm5 in rice (Oryza sativa L.).	Theor. Appl. Genet.	133(6)	2021-2033	2020		
48308	32187179	Espinas N.A., Tu L.N., Furci L., Shimajiri Y., Harukawa Y., Miura S., Takuno S., Saze H.	Transcriptional regulation of genes bearing intronic heterochromatin in the rice genome.	PLoS Genet.	16(3)	e1008637	2020	IBM2,JMJ718,JMJ719	OsIBM2, TN1, OsTN1,OsJMJ718,OsJMJ719
48309	32155767	Fan X., Chen J., Wu Y., Teo C., Xu G., Fan X.	Genetic and Global Epigenetic Modification, Which Determines the Phenotype of Transgenic Rice?	Int J Mol Sci	21(5)		2020	NAR2.1	OsNAR2.1, OsNRT3.1A
48310	32234010	Pan D., Yi J., Li F., Li X., Liu C., Wu W., Tao T.	Dynamics of gene expression associated with arsenic uptake and transport in rice during the whole growth period.	BMC Plant Biol.	20(1)	133	2020	LSI3,MRP1,PCS1,LSI1,LSI2,LSI6	Lsi3, OsLsi3, Lsi3/SIET2, SIET2,OsABCC1, ABCC1, OsABCC1-1, OsABCC1-2, OsMRP1,OsPCS1, OsPCS2, PCS2, OsPCS15, PCS15,lsi1, NIP2-1, OsNIP2;1, NIP2;1, OsLsi1, lsi(t), OsNIP2.1/OsLsi1/OsSIIT1, OsNIP2.1, NIP2.1,Lsi2, SIET1, OsLsi2, OsSIET1,Lsi6, OsNIP2;2, NIP2-2, OsLsi6, OsNIP2.2/OsLsi6, OsNIP2.2, NIP2.2
48311	32112568	Li W., Wang K., Chern M., Liu Y., Zhu Z., Liu J., Zhu X., Yin J., Ran L., Xiong J., He K., Xu L., He M., Wang J., Liu J., Bi Y., Qing H., Li M., Hu K., Song L., Wang L., Qi T., Hou Q., Chen W., Li Y., Wang W., Chen X.	Sclerenchyma cell thickening through enhanced lignification induced by OsMYB30 prevents fungal penetration of rice leaves.	New Phytol.	226(6)	1850-1863	2020	MYB30,4CL2,4CL4,BSRD1	OsMYB30, OsMYB5P, MYB5P, OsMYB13a, MYB13a, Os2R_MYB26, 2R_MYB26, OsMYB30C, MYB30C,Os4CL2,Os4CL4,ZFP36, OsZFP36, OsBSRD1, Bsr-d1, BSR-D1, DLN91, OsDLN91
48312	32265267	Kawa D.	APC/CTE Shapes Rice Architecture from Top to Bottom.	Plant Cell	32(6)	1786-1787	2020	MOC1,TAD1	moc1, OsMOC1, OsGRAS-33, OsGRAS33, GRAS-33, GRAS33, GNP6, OsGNP6,TAD1, OsCCS52A, TE, OsWD40-61, TAD1/TE, CCS52A1 ,  OsCCS52A1/TE/TAD1, CCS52A1/TE/TAD1, OsCDH1A, CDH1A
48313	32253321	Zhang H., Li L., He Y., Qin Q., Chen C., Wei Z., Tan X., Xie K., Zhang R., Hong G., Li J., Li J., Yan C., Yan F., Li Y., Chen J., Sun Z.	Distinct modes of manipulation of rice auxin response factor OsARF17 by different plant RNA viruses for infection.	Proc. Natl. Acad. Sci. U.S.A.	117(16)	9112-9121	2020	ARF6B,IAA20,ARF17,ARF6A,JAR1,ARF8	OsARF6b, OsARF25, ARF25,OsIAA20,OsARF17,OsARF6a, OsARF6, ARF6,OsJAR1, OsGH3.5, GH3.5, OsGH3-5, GH3-5,OsARF8, OsARF12, ARF12
48314	32303660	Zhang T.	When Less Is More: GSK2-OML4 Module Negatively Regulates Grain Size in Rice.	Plant Cell	32(6)	1781	2020	EHD6	OML4, OsML4, ML4, OsEHD6
48315	32265265	Lin Q., Zhang Z., Wu F., Feng M., Sun Y., Chen W., Cheng Z., Zhang X., Ren Y., Lei C., Zhu S., Wang J., Zhao Z., Guo X., Wang H., Wan J.	The APC/CTE E3 Ubiquitin ligase Complex Mediates the Antagonistic Regulation of Root Growth and Tillering by ABA and GA.	Plant Cell	32(6)	1973-1987	2020	MOC1,TAD1,SHR1,PYL/RCAR10	moc1, OsMOC1, OsGRAS-33, OsGRAS33, GRAS-33, GRAS33, GNP6, OsGNP6,TAD1, OsCCS52A, TE, OsWD40-61, TAD1/TE, CCS52A1 ,  OsCCS52A1/TE/TAD1, CCS52A1/TE/TAD1, OsCDH1A, CDH1A,OsSHR1, OsGRAS-38, OsGRAS38, GRAS-38, GRAS38, DLN189, OsDLN189, OsSHR, SHR,OsPYL/RCAR10, PYL10, OsPYL10, OsPYL1, PYL1, R10, OsPYL/R10
48316	32300014	Flynn J.M., Hubley R., Goubert C., Rosen J., Clark A.G., Feschotte C., Smit A.F.	RepeatModeler2 for automated genomic discovery of transposable element families.	Proc. Natl. Acad. Sci. U.S.A.	117(17)	9451-9457	2020		
48317	32315840	Li J., Li X., Khatab A.A., Xie G.	Phylogeny, structural diversity and genome-wide expression analysis of fibrillin family genes in rice.	Phytochemistry	175	112377	2020		
48318	32327579	Stokstad E.	Heat-protected plants offer cool surprise-greater yields.	Science	368(6489)	355	2020		
48319	32247721	Gupta M.K., Gouda G., Donde R., Vadde R., Behera L.	In silico characterization of the impact of mutation (LEU112PRO) on the structure and function of carotenoid cleavage dioxygenase 8 in Oryza sativa.	Phytochemistry	175	112365	2020		
48320	32209204	Zafar S.A., Hameed A., Ashraf M., Khan A.S., Qamar Z.U., Li X., Siddique K.H.M.	Agronomic, physiological and molecular characterisation of rice mutants revealed the key role of reactive oxygen species and catalase in high-temperature stress tolerance.	Funct. Plant Biol.	47(5)	440-453	2020		
48321	32336018	Li H., Wang Z., Han K., Guo M., Zou Y., Zhang W., Ma W., Hua H.	Cloning and functional identification of a Chilo suppressalis-inducible promoter of rice gene, OsHPL2.	Pest Manag. Sci.			2020		
48322	32335936	Xu H., Li X., Zhang H., Wang L., Zhu Z., Gao J., Li C., Zhu Y.	High temperature inhibits the accumulation of storage materials by inducing alternative splicing of OsbZIP58 during filling stage in rice.	Plant Cell Environ.			2020		
48323	32291541	Lu R., Liu Z., Shao Y., Su J., Li X., Sun F., Zhang Y., Li S., Zhang Y., Cui J., Zhou Y., Shen W., Zhou T.	Nitric Oxide Enhances Rice Resistance to Rice Black-Streaked Dwarf Virus Infection.	Rice (N Y)	13(1)	24	2020	PR1B,NOA1,WRKY13,_,ICS1	OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1, OsPR1a, PR1a,OsNOA1,OsWRKY13,OsNR1, NR1, nia1, OsNIA1, NIA1, OsNIA2, NIA2,OsICS1, OsICS, ICS
48324	32266981	Sun Y., Jain A., Xue Y., Wang X., Zhao G., Liu L., Hu Z., Hu S., Shen X., Liu X., Ai H., Xu G., Sun S.	OsSQD1 at the crossroads of phosphate and sulfur metabolism affects plant morphology and lipid composition in response to phosphate deprivation.	Plant Cell Environ.	43(7)	1669-1690	2020	SQD1	OsSQD1
48325	32343459	Magne K., Liu S., Massot S., Dalmais M., Morin H., Sibout R., Bendahmane A., Ratet P.	Roles of BdUNICULME4 and BdLAXATUM-A in the non-domesticated grass Brachypodium distachyon.	Plant J.	103(2)	645-659	2020	BOP2,BOP3,BOP1	OsNH5, NH5, OsBOP2,  OsBTBA5, BTBA5,NH5, OsNH5, OsBOP3,  OsBTBA6, BTBA6,OsNPR5, NPR5, NH4, OsNH4, OsBOP1,  OsBTBA3, BTBA3
48326	32321839	Wang H., Zhang Y., Xiao N., Zhang G., Wang F., Chen X., Fang R.	Rice <i>GERMIN-LIKE PROTEIN 2-1</i> Functions in seed dormancy under the Control of Abscisic Acid and Gibberellic Acid Signaling Pathways.	Plant Physiol.	183(3)	1157-1170	2020	GLP2-1,GAMYB,ABI5	OsGLP2-1, OsCDP2.1, CDP2.1,OsGAMYB, GAM1, OsGAMyb, Os-MYBGA, Os GAMYB, OsMYBGA, MYBGA, Os2R_MYB15, 2R_MYB15 ,OsABI5, OsbZIP10, OsABF1, OREB1, OsABI5-1, OsABI5-2, OsOREB1, OREB1 
48327	32252420	Zhang L., Wang C., Yu Y., Zhang Y., Song Y., Li Z., Wang S., Zhang Y., Guo X., Liu D., Li Z., Ma S., Zheng J., Zhao H., Zhang G.	Cyclin-Dependent Kinase Inhibitor gene <i>TaICK1</i> acts as a Potential Contributor to Wheat male sterility induced by a Chemical Hybridizing Agent.	Int J Mol Sci	21(7)		2020	CYCD6;1,KRP1,CYCD2;2	CycD6;1, CycD6;os;1, Orysa;CycD6;1, Orysa;CYCD6;1, OsCYCD6;1,OsiICK1, Orysa;KRP1, OrysaICK1, Orysa;ICK1, CDKI, OsICK1, ICK1, OsKRP1,CycD2;2, CycD2;os;2, Orysa;CycD2;2, Orysa;CYCD2;2, CyclinD3;1, OsCYCD2;1, OsCYCD3;1, CYCD3;1
48328	32159895	Guo N., Hu J., Yan M., Qu H., Luo L., Tegeder M., Xu G.	Oryza sativa Lysine-Histidine-type Transporter 1 functions in root uptake and root-to-shoot allocation of amino acids in rice.	Plant J.	103(1)	395-411	2020	HT	OsHT, OsLHT1, LHT1
48329	32323464	Xu Y., Wang F., Chen Z., Wang J., Li W., Fan F., Tao Y., Jiang Y., Zhu Q.H., Yang J.	CRISPR/Cas9-targeted mutagenesis of the OsROS1 gene induces pollen and embryo sac defects in rice.	Plant Biotechnol. J.			2020	TA2	ROS1A, ROS1a, DME1, OsROS1A, OsROS1, ROS1, mOsROS1, ROS1A/DNG702, DNG702, OsDNG702
48330	32347065	Wang K., An W., Liu Y., Liu D., Feng L., Wang J., Huang J., Liu X., Liang W.	[Disruption of OsRhoGDI2 by CRISPR/Cas9 technology leads to semi-dwarf in rice].	Sheng Wu Gong Cheng Xue Bao	36(4)	707-715	2020		
48331	32408008	Yang J., Liu S., Ji L., Tang X., Zhu Y., Xie G.	Identification of novel OsCML16 target proteins and differential expression analysis under abiotic stresses in rice.	J. Plant Physiol.	249	153165	2020		
48332	32289640	Song W., Hao Q., Cai M., Wang Y., Zhu X., Liu X., Huang Y., Nguyen T., Yang C., Yu J., Wu H., Chen L., Tian Y., Jiang L., Wan J.	Rice OsBT1 regulates seed dormancy through the glycometabolism pathway.	Plant Physiol. Biochem.	151	469-476	2020	BT1-1,KO5,EXPB3,AMY1A,NCED2	OsBT1-1, OsEnS-29, OsBT1, OsBt1, BT1, Bt1, OsBt1-1, shr3, OsBT1-2, BT1-2,OsKO5, OSKOL5, KOS2, OsKOS2, CYP701A9, OsCYP701A9, OsKO1, KO1,OsEXPB3, osaEXPb1.10, EXPb1.10,Amy1A/C*(RAmy1A/C), alpha Amy7, AMY1.1, Amy1A, RAmy1A/C, Amy1A/C*, Amy1, Amy1A_C, OsAmy1A, alphaAmy7-C, RAmy1A, AmyI-1, OsAmyI-1, OsRamy1A,OsNCED2, OsNced2, OsCCD4b, CCD4b, OsCCD4c, CCD4c
48333	32212961	Muthuramalingam P., Jeyasri R., Selvaraj A., Kalaiyarasi D., Aruni W., Pandian S.T.K., Ramesh M.	Global transcriptome analysis of novel stress associated protein (<i>SAP</i>) genes expression dynamism of combined abiotic stresses in <i>Oryza sativa</i> (L.).	J. Biomol. Struct. Dyn.		1-12	2020		
48334	32351163	Lu W., Xu L., Zhang Y., Huang X., Chen G., Xiong F., Wu Y.	Study on the effect of sodium-nanoparticle in rice root development.	Plant Signal Behav	15(6)	1759954	2020		
48335	32346668	Hu W., Figueroa-Balderas R., Chi-Ham C., Lagarias J.C.	Regulation of monocot and dicot plant development with constitutively active alleles of phytochrome B.	Plant Direct	4(4)	e00210	2020	_,IRO2,PORA,PIL13,CAB1R,OPT7,RBCS,GHD7,PHYB	,OsIRO2, OsbHLH056, bHLH056, bHLH56, OsbHLH56,OsPorA, OsPORA,OsPIL1, OsPIL13, OsbHLH152, bHLH152, PIF7, OsPIF7, OsPIF4, PIF4, OsPIF1,cab1R, LHCP, CAB, OsLhcb1, Lhcb1, Cab1, OsCAB1, Lhcb1b, OsLhcb1b, CAB2R,OPT, OsOPT7,rbcS, OsRbcS, RBCS-C, RbcS2, OsRBCS2, RbcS1, OsRbcS2, OsrbcS1,Ghd2, Ghd7, OsGhd7, OsCCT26, OsCMF8, OsI, Ghd7/Hd4, Hd4, EH7-1/Hd4, Ghd7-0a, EH7-1, EH7/Ghd7, EH7, OsEH7, GLW7.1, OsGLW7.1,phyB, PHYB1, OsPHYB, OsphyB, OsYHB, YHB, OsPHYB/OsYHB
48336	32128922	Shen L., Tian Q., Yang L., Zhang H., Shi Y., Shen Y., Zhou Z., Wu Q., Zhang Q., Zhang W.	Phosphatidic acid directly binds with rice potassium channel OsAKT2 to inhibit its activity.	Plant J.	102(4)	649-665	2020	AKT2,SUT1	OsAKT2, ZMK2, OsZMK2, OsK3.1, K3.1,OsSUT1, OsSUT2
48337	32253631	Mekawy A.M.M., Assaha D.V.M., Ueda A.	Constitutive overexpression of rice metallothionein-like gene OsMT-3a enhances growth and tolerance of Arabidopsis plants to a combination of various abiotic stresses.	J. Plant Res.	133(3)	429-440	2020		
48338	32313086	Kaur A., Neelam K., Kaur K., Kitazumi A., de Los Reyes BG., Singh K.	Novel allelic variation in the Phospholipase D alpha1 gene (OsPLDalpha1) of wild Oryza species implies to its low expression in rice bran.	Sci Rep	10(1)	6571	2020	PLDalpha1	RPLD1, PLD1, OsPLDalpha1, OsC2DP2, C2DP2
48339	32293285	You M.K., Lee Y.J., Kim J.K., Baek S.A., Jeon Y.A., Lim S.H., Ha S.H.	The organ-specific differential roles of rice DXS and DXR, the first two enzymes of the MEP pathway, in carotenoid metabolism in Oryza sativa leaves and seeds.	BMC Plant Biol.	20(1)	167	2020	PSY1,PSY2,_,DXS2,DXR,DXS1,DXS3	OsPSY1 ,OsPSY2,OsBCH2, BCH2, OsHYD1, HYD1,OsDXS2, dxs2,OsDXR, OsIspC, IspC,CLA1, OsDXS1, dxs1, OsDXS, DXS, OsTKL1, TKL1,OsDXS, OsDXS3, dxs3, DXS2, OsDXS2
48340	32540015	Guo L., Chen W., Tao L., Hu B., Qu G., Tu B., Yuan H., Ma B., Wang Y., Zhu X., Qin P., Li S.	gwc1 is essential for high grain quality in rice.	Plant Sci.	296	110497	2020		
48341	32170894	Song S., Wang G., Wu H., Fan X., Liang L., Zhao H., Li S., Hu Y., Liu H., Ayaad M., Xing Y.	OsMFT2 is involved in the regulation of ABA signaling-mediated seed germination through interacting with OsbZIP23/66/72 in rice.	Plant J.	103(2)	532-546	2020	TRAB1,LEA20,WSI18,BZIP23,LEA17,LEA1,RAB16A,MFT2,LEA30,EM,BZIP72,LEA3-1,LEA4	OsbZIP66, OsABF5, Osbzip66, OsTRAB1, bZIP66, ABF5,OsLEA20, OsLEA1, OsLEA1a,OsLEA14, OsLEA14a, OsLEA14b, wsi18, pwsi18, OsWsi18, OsLEA14/WSI18,OsbZIP23, OsAREB1, OsABF2, Osbzip23, OsAREB2, OsZIP23, ZIP23,OsLEA17, OsLEA3-2, LEA3-2, LEA1,OsLEA1, OsLEA2, LEA2,Rab16A, rab21, RAB21, OsRab21, OsRAB21, OsRAB-21, OsRab16A, OsLEA29, rab16A, OsRAB16A,OsMFT2, OsMFT,OsLEA30, OsEnS-43,Em*, EMP1, Emp1, EM, Em, OsEm, Osem, OsLEA21, OsEm1, Em1 ,OsbZIP72, OsAREB2, OsABF4, ABF4, Osbzip72, OsABI5, ABI5,OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3, OsLEA3A, LEA3A,OsLEA4
48342	32340222	Lee J., Moon S., Jang S., Lee S., An G., Jung K.H., Park S.K.	<i>OsbHLH073</i> Negatively Regulates Internode Elongation and plant height by Modulating GA Homeostasis in Rice.	Plants (Basel)	9(4)		2020	GA2OX1,KO4,_,KO5	OsGA2ox1, ga2ox-1, OsGA2ox-1, ga2ox, ga2ox 1, GA2ox1,OsKO4, OsKOL4, KOS1, CYP701A8, OsCYP701A8, OsKO2, CYP701A8/OsKOL4,OsbHLH073, OsbHLH73, bHLH073,OsKO5, OSKOL5, KOS2, OsKOS2, CYP701A9, OsCYP701A9, OsKO1, KO1
48343	32409319	Baggs E.L., Monroe J.G., Thanki A.S., O'Grady R., Schudoma C., Haerty W., Krasileva K.V.	Convergent Loss of an EDS1/PAD4 Signaling Pathway in Several Plant Lineages Reveals Coevolved Components of Plant Immunity and Drought Response.	Plant Cell	32(7)	2158-2177	2020		
48344	32385105	Zhang T.	The Butterfly Effect: Natural Variation of a Chloroplast tRNA-Modifying Enzyme Leads to Pleiotropic Developmental Defects in Rice.	Plant Cell	32(7)	2073-2074	2020	PDD	OsPDD, TCD8, OsTCD8
48345	32430319	Korman A., Sun H., Hua B., Yang H., Capilato J.N., Paul R., Panja S., Ha T., Greenberg M.M., Woodson S.A.	Light-controlled twister ribozyme with single-molecule detection resolves RNA function in time and space.	Proc. Natl. Acad. Sci. U.S.A.	117(22)	12080-12086	2020		
48346	32434917	Wang W., Zhou P., Mo X., Hu L., Jin N., Chen X., Yu Z., Meng J., Erb M., Shang Z., Gatehouse A.M.R., Wu J., Lou Y.	Induction of defense in cereals by 4-fluorophenoxyacetic acid suppresses insect pest populations and increases crop yields in the field.	Proc. Natl. Acad. Sci. U.S.A.	117(22)	12017-12028	2020		
48347	32409321	Yin W., Xiao Y., Niu M., Meng W., Li L., Zhang X., Liu D., Zhang G., Qian Y., Sun Z., Huang R., Wang S., Liu C.M., Chu C., Tong H.	ARGONAUTE2 Enhances Grain Length and salt tolerance by Activating <i>BIG GRAIN3</i> to Modulate Cytokinin Distribution in Rice.	Plant Cell	32(7)	2292-2306	2020	PUP7,AGO2,PUP4,ABCG18,AGO3	OsPUP7,OsAGO2,OsPUP4, BG3/OsPUP4, BG3, OsBG3,OsABCG18,OsAGO3
48348	32409606	Mao L., Kawaide H., Higuchi T., Chen M., Miyamoto K., Hirata Y., Kimura H., Miyazaki S., Teruya M., Fujiwara K., Tomita K., Yamane H., Hayashi K.I., Nojiri H., Jia L., Qiu J., Ye C., Timko M.P., Fan L., Okada K.	Genomic evidence for convergent evolution of gene clusters for momilactone biosynthesis in land plants.	Proc. Natl. Acad. Sci. U.S.A.	117(22)	12472-12480	2020	CPS4,CYP99A3,MAS,CYP99A2,KS4,SDR110C-MS2	OsCPS4, CYC1, OsCYC1, OsCyc1, cpsl3, OsCPSL3, OsCPSsyn, OsCyc1/OsCPS4, OsTPS15, Os-CPS4, TPS11, OsTPS11,OsCYP99A3,OsMAS, MAS1, OsMAS1, OsMAS/SDR110C-MS1, SDR110C-MS1, OsSDR110C-MS1, OsMS1, MS1,OsCYP99A2,OsKS4, KS4, KSL4, OsKSL4, DTS2, OsDTS2, OsTPS16, TPS16, TPS8, OsTPS8,OsSDR110C-MS2, OsMAS1, MAS1, OsMS2, MS2, MAS2
48349	32471860	Tian L., Doroshenk K.A., Zhang L., Fukuda M., Washida H., Kumamaru T., Okita T.	Zipcode RNA-Binding Proteins and Membrane Trafficking Proteins Cooperate to Transport Glutelin mRNAs in Rice Endosperm.	Plant Cell	32(8)	2566-2581	2020	GLUP4,_,RBP-L,RBP-P	glup4(esp8), esp8, glup4, OsRab5B2, Rab5a, OsRab5a, GPA1/Rab5a, GPA, GLUP4/Rab5, GLUP4/Rab5a, GPA1, OsGPA1,OsSec18, Sec18, OsNSF, NSF,OsRBP-L,OsRBP-P
48350	32398372	Wierbowski S.D., Vo T.V., Falter-Braun P., Jobe T.O., Kruse L.H., Wei X., Liang J., Meyer M.J., Akturk N., Rivera-Erick CA., Cordero N.A., Paramo M.I., Shayhidin E.E., Bertolotti M., Tippens N.D., Akther K., Sharma R., Katayose Y., Salehi-Ashtiani K., Hao T., Ronald P.C., Ecker J.R., Schweitzer P.A., Kikuchi S., Mizuno H., Hill D.E., Vidal M., Moghe G.D., McCouch S.R., Yu H.	A massively parallel barcoded sequencing pipeline enables generation of the first ORFeome and interactome map for rice.	Proc. Natl. Acad. Sci. U.S.A.	117(21)	11836-11842	2020	FLZ14,_,GAPC,S5A,OSK4,GRX12,UBC5,EEF1B,EEF1B',GAPC1	OsFLZ14,Rad23,OsGapC3, OGapC3, OsGAPDH1, GAPDH1, OsGapC1,OsS5a, S5a, OsRpn10, Rpn10, OsvWA9, vWA9,osk4, OsK4, OsATG1c, ATG1C, SnRK1B, snrk1b, SnRK1B/OSK24, OSK24, OsK24, OsSNRK1b, OsSnRK1.4, SnRK1.4, OsSnRK1alphaC, SnRK1alphaC,OsGRX12,OsUBC5,eEF-1beta, EF-1beta,eEF-1beta', EF-1beta',OsGapC1, OsGapC3
48351	32369737	Zhu Z., Zhang H.	It Takes NSUN2 to Beat the Heat in Rice.	Dev. Cell	53(3)	253-254	2020	NSUN1,NSUN2	OsNSUN1,OsNSUN2
48352	32432802	Kumar A., Daware A., Kumar A., Kumar V., Gopala Krishnan S., Mondal S., Patra B.C., Singh A.K., Tyagi A.K., Parida S.K., Thakur J.K.	Genome-wide analysis of polymorphisms identified domestication-associated long low-diversity region carrying important rice grain size/weight quantitative trait loci.	Plant J.			2020	LK3,GW5,TOR	lk3(t), lk3(t)*, SG3, GS3, SG3-GS3, OsGW3, OsGS3, RGG3/GS3/Mi/OsGGC1, RGG3, Mi, OsGGC1, GGC1, OsSYL3, SYL3, TT2, OsTT2,qSW5/GW5, GSE5, OsGSE5, OsGW5, qSW5,OsTOR
48353	32237201	Liang G., Zhang H., Li Y., Pu M., Yang Y., Li C., Lu C., Xu P., Yu D.	Oryza sativa FER-LIKE FE DEFICIENCY-INDUCED TRANSCRIPTION FACTOR (OsFIT/OsbHLH156) interacts with OsIRO2 to regulate iron homeostasis.	J Integr Plant Biol	62(5)	668-689	2020	DEP,IRT2,MIR,YSL9,NAS2,FDH,IDI2,TOM1,MTK1,APT1,IDI4,MTN,YSL16,ZIFL9,SIP2A,YSL2,HA1,ENA1,BHLH58,FIT,DMAS1,NAS1,YSL15,NRAMP1,BHLH59,BHLH63,BHLH60,IMA1,IRO2,NAAT1,IRT1	OsDEP,OsIRT2, OsIRT1, OsZIP15, ZIP15,OsMIR,OsYSL9, OsYs13 ,OsNAS2, OsNAS1,OsFDH, FDH 1, FDH1, OsFDH1,OsIDI2,OsTOM1, ZIFL4, OsZIFL4 ,OsMTK, OsMTK1, MTK,OsAPT1, APRT,OsIDI4,OsMTN,OsYSL16, Os-YSL16, OsYs14 ,OsZIFL9,Sip2A, ARD 2, ARD2, OsARD2, OsARD, IDI1, OsIDI1,OsYSL2, Os-YSL2, OsYs6 ,OsHA1,OsENA1,OsbHLH058, bHLH058, bHLH58, OsPRI2, PRI2,OsbHLH156, OsFIT/OsbHLH156, OsFIT, bHLH156, OsIROP1, IROP1,OsDMAS1, OsAKR5, AKR5,OsNAS1,OsYSL15, OsYs7,OsNramp1, OsNRAMP1, OsNramp6,OsbHLH059, bHLH059, OsbHLH59, bHLH59, OsPRI3, PRI3,OsIRO3, IRO3, OsbHLH063, bHLH063, bHLH63,OsbHLH060, bHLH060, bHLH60, OsPRI1, PRI1, OsbHLH115, bHLH115,OsIMA1,OsIRO2, OsbHLH056, bHLH056, bHLH56, OsbHLH56,OsNAAT1,OsIRT1, ZIP10, OsZIP10, OsZIP12, ZIP12
48354	32422535	Zhong Y., Chen J.	Ameliorative effects of Lanthanum(V) on Copper(U) stressed rice (Oryza sativa) and its molecular mechanism revealed by transcriptome profiling.	Plant Physiol. Biochem.	152	184-193	2020		
48355	32397668	Wei S., Wang Y., Zhou J., Xiang S., Sun W., Peng X., Li J., Hai Y., Wang Y., Li S.	The Conserved Effector UvHrip1 interacts with OsHGW, and Infection of <i>Ustilaginoidea virens</i> Regulates Defense- and heading date-Related Signaling Pathway.	Int J Mol Sci	21(9)		2020	SH11,HGW,PR1-51	OsJAmyb, JAmyb, OsJAMyb, OsMYB21, MYB21, Os2R_MYB91, 2R_MYB91, OgSH11, OsSH11,OsHGW,OsPR1#051, OsPR1-51
48356	32424468	Onohata T., Gomi K.	Overexpression of jasmonate-responsive OsbHLH034 in rice results in the induction of bacterial blight resistance via an increase in lignin biosynthesis.	Plant Cell Rep.			2020	BHLH34	OsbHLH034, bHLH034
48357	32528516	Ma Z., Wu T., Huang K., Jin Y.M., Li Z., Chen M., Yun S., Zhang H., Yang X., Chen H., Bai H., Du L., Ju S., Guo L., Bian M., Hu L., Du X., Jiang W.	A Novel AP2/ERF Transcription Factor, OsRPH1, Negatively Regulates plant height in Rice.	Front Plant Sci	11	709	2020	GA20OX3,CRY1B,GNP1,GA3OX1,D18,GA2OX7,SD1,GA2OX9,PRL5,RPH1	OsGA20ox3, ga20ox3,OsCRY1b, OsCRY2, CRY1b, CRY1, OsCCT1b, CCT1b,GA20OX1, OsGA20ox1, 20ox1, GA20ox-1, ga20ox1, Os20ox, C20OX2, OsGA20ox2, OsGA20ox-1, GA20ox1, OsGNP1,OsGA3ox1, GA3ox1, OsGA3OX1,d18-h  (d18-I, d18h), dwf15, d25, d18, d18-k, d18-AD, d18-dy, OsGA3ox2, ga3ox2, OsGA3OX2, GA3OX2, OsGA3ox-2, GA3ox-2, GA3ox1,OsGA2ox7,sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2, OsPHQ1, OsPHq1, PHq1,OsGA2ox9, GA2ox7, 2-ODD35, Os2-ODD35, 2ODD35, Os2ODD35,OsGA20ox4, ga20ox4, GA20ox2, Prl5, Prl5/GA20ox4, OsPrl5,OsERF#052, OsERF052, OsERF52, ERF52, AP2/EREBP#053, AP2/EREBP53, OsRPH1, STG5, OsSTG5
48358	32417636	Elbasan F., Ozfidan-Konakci C., Yildiztugay E., Kucukoduk M.	Rare-earth element scandium improves stomatal regulation and enhances salt and drought stress tolerance by up-regulating antioxidant responses of Oryza sativa.	Plant Physiol. Biochem.	152	157-169	2020		
48359	32471084	Park H.L., Yoo Y., Bhoo S.H., Lee T.H., Lee S.W., Cho M.H.	Two Chalcone Synthase Isozymes Participate Redundantly in UV-Induced Sakuranetin Synthesis in Rice.	Int J Mol Sci	21(11)		2020	PKS25,CHS27,CHS,PKS13,PKS11,PKS24,LAP6,PKS17,PKS14,PKS15,PKS27,PKS4,PKS8,PKS3,PKS6,PKS7,PKS22,CHS19,PKS18,PKS1 ,CHS31,PKS9,PKS20,PKS2,PKS12,PKS10,CHS26,PKS5,PKS23,PKS16	OsPKS25, OsCHS23, CHS23, OsCHS26, CHS26,OsCHS27,CHS*, Oschs, chs, chas, OsCHS, OsCHS1, CHS1, OsPKS26, PKS26, OsCHS24, CHS24, OsCHS27, CHS27,OsPKS13, OsCHS13, CHS13,OsPKS11, OsCHS11, CHS11,OsPKS24, OsCHS30, CHS30, OsCHS25, CHS25,OsPKS1, PKS1, YY2, OsPKS21, PKS21, OsLAP6/OsPKS1, OsLAP6, OsCHS22, CHS22,OsPKS17, OsCHS17, CHS17,OsPKS14, OsCHS14, CHS14,OsPKS15, OsCHS15, CHS15,OsPKS27, OsCHS25, CHS25, OsCHS28, CHS28,OsPKS04, PKS04, OsPKS4, OsCHS4, CHS4,OsCHS2, CHS2, OsPKS08, OsPKS8, PKS08, OsCHS8, CHS8,OsPKS03, PKS03, OsPKS3, OsCHS3, CHS3,CHS, OsPKS06, OsPKS6, PKS06, OsCHS6, CHS6,OsPKS07, PKS07, OsPKS7, OsCHS7, CHS7,OsPKS22, OsCHS28, CHS28,OsCHS19,OsPKS18, OsCHS18, CHS18,OsPKS01, PKS01, OsPKS1, OsCHS1, CHS1,OsCHS31,OsPKS09, PKS09, OsPKS9, OsCHS9, CHS9,OsPKS20, OsCHS21, CHS21,CHS, OsPKS02, OsPKS2, PKS02, OsCHS2, CHS2,CHS, OsPKS12, OsCHS12, CHS12,OsPKS10, OsPKS2, PKS2, OsCHS10, CHS10,OsCHS26,OsPKS05, PKS05, OsPKS5, OsCHS5, CHS5,OsPKS23, OsCHS29, CHS29, OsCHS24, CHS24,OsPKS16, OsCHS16, CHS16
48360	32456700	Fang C., Zhang P., Li L., Yang L., Mu D., Yan X., Li Z., Lin W.	serine hydroxymethyltransferase localised in the endoplasmic reticulum plays a role in scavenging H2O2 to enhance rice chilling tolerance.	BMC Plant Biol.	20(1)	236	2020	TUB6,APX1,TUBA3,_,_,SHMT1,TUBA1,LSI1,ALBA3,MSCP,_,ISC24	OsTUB6, TUBB6,OsAPX1, APXa, OsAPXa, OsAPx01, OsAPx1, OSAPX1, APx1, cAPX, APX2, cAPXa, OscAPXa,OsTubA3, TubA3, OS-TubA1, TubA1,,RMtATPb, atpB, AtpB ,OsSHM1, SHM1, OsSHMT1, CDM1, OsCDM1, OsSHTM3, SHTM3, OsSHMT, SHMT,OsTubA1, TubA1, OS-TubA3, TubA3,lsi1, NIP2-1, OsNIP2;1, NIP2;1, OsLsi1, lsi(t), OsNIP2.1/OsLsi1/OsSIIT1, OsNIP2.1, NIP2.1,OsAlba3, Alba3, NABP, OsNABP,OsMSCP,,OsISC24, HSP70, OsHSP70
48361	32563453	Wen X., Sun L., Chen Y., Xue P., Yang Q., Wang B., Yu N., Cao Y., Zhang Y., Gong K., Wu W., Chen D., Cao L., Cheng S., Zhang Y., Zhan X.	Rice dwarf and low tillering 10 (OsDLT10) regulates tiller number by monitoring auxin homeostasis.	Plant Sci.	297	110502	2020	REL2	OsREL2, OsDLT10, DLT10, RSD1, OsRSD1, RSD1/REL2
48362	32549675	Santosh Kumar VV., Verma R.K., Yadav S.K., Yadav P., Watts A., Rao M.V., Chinnusamy V.	CRISPR-Cas9 mediated genome editing of <i>drought and salt tolerance</i> (<i>OsDST</i>) gene in <i>indica</i> mega rice cultivar MTU1010.	Physiol Mol Biol Plants	26(6)	1099-1110	2020	BHLH2,BHLH55,DST,BHLH54	OsbHLH002, bHLH002, OsbHLH2, bHLH2, OsICE1, ICE1, OsbHLH002/OsICE1,OsbHLH055, bHLH055, bHLH55, OsMUTE, MUTE,OsDST, DLN102, OsDLN102, HST1, OsHST1,OsbHLH054, bHLH054, bHLH54, OsSPCH1, SPCH1, SPCH
48363	32480163	Verma G., Srivastava D., Narayan S., Shirke P.A., Chakrabarty D.	Exogenous application of methyl jasmonate alleviates arsenic toxicity by modulating its uptake and translocation in rice (Oryza sativa L.).	Ecotoxicol. Environ. Saf.	201	110735	2020		
48364	32416343	Zheng C., Zhou J., Zhang F., Yin J., Zhou G., Li Y., Chen F., Xie X.	OsABAR1, a novel GRAM domain-containing protein, confers drought and salt tolerance via an ABA-dependent pathway in rice.	Plant Physiol. Biochem.	152	138-146	2020	ABAR1	OsABAR1
48365	32462553	Yang W., Ju Y., Zuo L., Shang L., Li X., Li X., Feng S., Ding X., Chu Z.	OsHsfB4d Binds the Promoter and Regulates the Expression of OsHsp18.0-CI to Resistant Against Xanthomonas Oryzae.	Rice (N Y)	13(1)	28	2020	HSFB4D,PAL1,PR1B,PR1A,HSP18.0	OsHsfB4d, HSfB4d, OsHsf-10, HSF10, OsHSF10,OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1, OsPR1a, PR1a,OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1, OsPR1b, PR1alpha, OsPR1alpha,OsHSP18.0-CI, HSP18.0-CI, OsHsp18.0, OsHSP18.0, Oshsp18.0, OsSHSP1, SHSP1, OsMSR3, MSR3, OsHSP20, HSP20, OsHSP18.6, HSP18.6
48366	32384927	Lu Y., Meng Y., Zeng J., Luo Y., Feng Z., Bian L., Gao S.	Coordination between GROWTH-REGULATING FACTOR1 and GRF-INTERACTING FACTOR1 plays a key role in regulating leaf growth in rice.	BMC Plant Biol.	20(1)	200	2020	CYCB2;1,GRF1,GIF3,CYCB2;2	cycB2;1 (=cycOs1), cycB2;1, cycOs1, CycB2;1, CycOs1, CYCB2-1, CYCOS1, CycB2-Os1, CYCB2, CycB2;os;1, Orysa;CycB2;1, CycB2;os;1, OsCycB2;1,OsGRF1,OsGIF3, OsGIF1, GIF1, MKB3,cycB2;2 (=cycOs2), cycB2;2, cycOs2, CycB2;2, CycOs2, CYCB2-2, CYCOS2, CycB2-Os2, CYCB2, CycB2;os;2, OsCycB2;2, Orysa;CycB2;2, OsCYCOS2, Os;cycB2;2, CYCB2.2, OsCYCB2.2
48367	32384870	Cao X., Wu L., Wu M., Zhu C., Jin Q., Zhang J.	Abscisic acid mediated proline biosynthesis and antioxidant ability in roots of two different rice genotypes under hypoxic stress.	BMC Plant Biol.	20(1)	198	2020	NCED3,P5CS,NCED1,ALDH18B2,NCED2	OSNCED3, OsNCED-3, OsNCED3, OsNCED3a, NCED3a, OsNCED4, NCED4, OsNECD2, OsNCED2b, NCED2b ,OsP5CS, P5CS1, OsP5CS1, OsALDH18B1, ALDH18B1, OsP5CS-1, P5CS-1,OSNCED1, OsNCED-1, OsNCED3, OsNced3, NCED3, OsNCED9, NCED9,P5CS2, OsP5CS2, OsALDH18B2 ,OSNCED2, OsNCED2, OsNCED5, NCED5
48368	32404412	Zhang C., Zhang F., Cheng X., Liu K., Tang J., Li Y., Tang D., Cheng Z., Yu H.	OsATM Safeguards Accurate Repair of Meiotic Double-Strand Breaks in Rice.	Plant Physiol.	183(3)	1047-1057	2020	HEI10,TOP6A1,DMC1B,ZIP4,ATM,DMC1A	HEI10A, HEI10B, OsHEI10,  OsRING434, RING434,OsTOP6A1, OsSPO11-1, OsSPO11A, SPO11-1,OsDMC1B, OsDmc1B, Dmc1B, RiLIM15B ,OsZIP4, SPO22, OsSPO22,OsATM,OsDMC1A, OsDmc1A, Dmc1A, DMC1, OsDMC1, RiLIM15A, OsRad51
48369	32523596	Dreni L., Ravasio A., Gonzalez-Schain N., Jacchia S., da Silva GJ., Ricagno S., Russo R., Caselli F., Gregis V., Kater M.M.	Functionally Divergent Splicing Variants of the Rice AGAMOUS Ortholog OsMADS3 Are Evolutionary Conserved in Grasses.	Front Plant Sci	11	637	2020	RAG	MADS3, OsMADS3, OsMADS3(t), RMADS222, RAG1, rf3
48370	32449922	Yoon J., Cho L.H., Yang W., Pasriga R., Wu Y., Hong W.J., Bureau C., Wi S.J., Zhang T., Wang R., Zhang D., Jung K.H., Park K.Y., P?rin C., Zhao Y., An G.	Homeobox transcription factor OsZHD2 promotes root meristem activity in rice by inducing ethylene biosynthesis.	J. Exp. Bot.			2020	ZHD2,YUCCA7,ACO3,_,FIB,ACS5,ASA2,ACL-D	OsZHD2,OsYUCCA7, OsYUC7, OsYUC5, YUC5, YUC7,OsACO3, ACO2, OsACO2,OsSAMS3, OsSAMS1, SAMS3, SAMS1, SAM2, SAM1,fib, OsFIB, OsTAR2, TAR2, TSG1, OsTSG1, OsTAA1, TAA1,OsACS5, OS-ACS5, OsBphi008a,OASA2 (=ASA2), OsASA2, OASA2, ASalpha2, OsASalpha2, OASA2,OsZHD1, ZHD1, OsACL-D, ZHD_G6, OsZHD_G6
48371	32499797	Lu J., Wang C., Wang H., Zheng H., Bai W., Lei D., Tian Y., Xiao Y., You S., Wang Q., Yu X., Liu S., Liu X., Chen L., Jang L., Wang C., Zhao Z., Wan J.	<i>Osmfs1</i>/<i>OsHOP2</i> Complex Participates in Rice Male and Female Development.	Front Plant Sci	11	518	2020	RPA2B,HOP2,MFS1	RPA2b, OsRPA2b,OsHOP2,MND1, OsMND1, OsMFS1
48372	32142141	Pan X., Yan W., Chang Z., Xu Y., Luo M., Xu C., Chen Z., Wu J., Tang X.	OsMYB80 Regulates Anther Development and pollen Fertility by Targeting Multiple Biological Pathways.	Plant Cell Physiol.	61(5)	988-1004	2020	RAFTIN1,_,_,DLN231,_,_,_,HAK3,_,FAR8,MS188	OsRAFTIN1, BURP13, OsBURP13, Os RAFTIN1,,App1, OsApp1,R2R3-MYB, OsDLN231, OsMYB108, MYB108, OsMYB31, MYB31, Os2R_MYB86, Os2R_MYB86, 2R_MYB86 ,,  OsRING151, RING151,GID1L2, OsGID1L2,,OsHAK3,,OsFAR8,OsMYB80, MYB80, OsMS188, Os2R_MYB44, 2R_MYB44, OsMYB103/OsMYB80/OsMS188/BM1, OsMYB103, MYB103
48373	32369636	Lee S., Marmagne A., Park J., Fabien C., Yim Y., Kim S.J., Kim T.H., Lim P.O., Masclaux-Daubresse C., Nam H.G.	Concurrent activation of OsAMT1;2 and OsGOGAT1 in rice leads to enhanced nitrogen use efficiency under nitrogen limitation.	Plant J.	103(1)	7-20	2020	NAC58,AMT1;1,AMT1;2,SGR,AMT1;3,GLT1,GLN1;2,GLN1;1	OsNAP, NAP, ONAC058, ONAC58, Os PS1, PS1, OsCTb1, CTb1,OsAMT1;1, OsAMT1:1, OsAMT1, AMT1-1, AMT1, OsAMT1p, OsAMT1-1, Osamt1-1, "OsAMT1,1", OsAMT1.1, AMT1.1, FCO12,OsAMT1;2, AMT1-2, Osamt1-3, "OsAMT1,3", OsAMT1;3, OsAMT1.3, OsAMT1.2, AMT1.2,sgr(t), sgr, OsSGR, OsSgr, SGR1, OsSGR1,OsAMT1;3, AMT1-3, Osamt1-2, "OsAMT1,2", OsAMT1;2, OsAMT1.3, AMT1.2,OsGLT1, OsNADH-GOGAT1, NADH-GOGAT1, OsNADH-GOGAT, GOGAT, NADH-GOGAT, OsGOGAT1, GOGAT1, OsGLU1,OsGLN1;2, GSr, RGS8, OsGS1;2, GS1;2, GS1, OsGS1-2, GS1-2, OsGS1.2, GS1.2,OsGLN1;1, GS1, RGS28, OsGS1;1, GS1;1, OsGS, GS1, OsGS1, GLN1-1, OsGS1-1, GS1-1, GS1.1, OsGS1.1
48374	31989154	Xie X., Zhang Z., Zhao Z., Xie Y., Li H., Ma X., Liu Y.G., Chen L.	The mitochondrial aldehyde dehydrogenase OsALDH2b negatively regulates tapetum degeneration in rice.	J. Exp. Bot.	71(9)	2551-2560	2020	CYP704B2,C6,WDA1,UDT1,TDR,GAMYB,CYP703A3,RTS,ALDH2B1  	OsCYP704B2,Osc6, Osg6B, OsG6B, OsLTPG25, OsLTPg25, OsLtpVII.1, Os C6,OsWDA1, Wda1, wda1, OS-CER1, OsGL1-5,Udt1, bHLH164, OsUDT1, OsbHLH164 ,tdr, OsbHLH005, bHLH005, OsbHLH5, bhlh5, TDR1, OsTDR, OsTDR1, OsMYC5, MYC5,OsGAMYB, GAM1, OsGAMyb, Os-MYBGA, Os GAMYB, OsMYBGA, MYBGA, Os2R_MYB15, 2R_MYB15 ,OsCYP703A3,RTS, RTS2,OsALDH2B1, OsALDH2b, ALDH2b
48375	32456188	R?thor? E., Ali N., Yvin J.C., Hosseini S.A.	Silicon Regulates Source to Sink Metabolic Homeostasis and Promotes Growth of Rice Plants Under Sulfur Deficiency.	Int J Mol Sci	21(10)		2020	SULTR2;1,LSI6,LSI2,SULTR1;1,SULTR1;2,SULTR2;2,LSI1	OsSultr2;1, OsSul2;1, OsaSULTR2, SULTR2,Lsi6, OsNIP2;2, NIP2-2, OsLsi6, OsNIP2.2/OsLsi6, OsNIP2.2, NIP2.2,Lsi2, SIET1, OsLsi2, OsSIET1,OsSultr1;1, OsSul1;1, Sul1;1, OsSultr1;1(a), OsSultr1;1(b),OsSultr1;2, OsSul1;2,OsSultr2;2, OsSul2;2, OsaSULTR2;1, SULTR2;1, OsSULTR2;1,lsi1, NIP2-1, OsNIP2;1, NIP2;1, OsLsi1, lsi(t), OsNIP2.1/OsLsi1/OsSIIT1, OsNIP2.1, NIP2.1
48376	32176820	Xu Y., Hu D., Hou X., Shen J., Liu J., Cen X., Fu J., Li X., Hu H., Xiong L.	OsTMF attenuates cold tolerance by affecting cell wall properties in rice.	New Phytol.	227(2)	498-512	2020	PRX132,_,PRP1.3,BC6,POX1,PRP3,_,PRP1.2,PRX128,PRP1.4,SIP25,CESA7,PRX77,BURP16,BC7	prx132, prx133, OsPRX132, OsPRX133,PRP,OsPRP1.3,Bc6*, Bc6, OsCesA9, CESA9, OsCESA9, OS_CESA09, OsCesA 9, CesA9, BC88, SDBC1, OsSDBC1,Pox1(Px,Pe), PRX74, Px, Pe, Pox1, prx74,OsPRP3,PRP,OsPRP1.2,prx128, OsPRX128, POD128, OsPOD128,OsPRP1.4,OsSIP25, OsTMF, TMF,OsCesA7, OsCESA7, OS_CESA07, OsCesA 7, CesA7,prx77, OsPRX77,OsRD22, RD22, OsBURP16,OsCesA4, OsCESA4, CESA4, OS_CESA04, BC11, bc7t, Bc7(t), bc-7, OsCesA 4, CesA4, FC17/CESA4, FC17, OsFC17
48377	32508867	Zheng X., Qi C., Yang L., Quan Q., Liu B., Zhong Z., Tang X., Fan T., Zhou J., Zhang Y.	The Improvement of CRISPR-Cas9 System With Ubiquitin-associated domain Fusion for Efficient Plant Genome Editing.	Front Plant Sci	11	621	2020		
48378	32694014	Li J., Wang Z., He G., Ma L., Deng X.W.	CRISPR/Cas9-mediated disruption of TaNP1 genes results in complete male sterility in bread wheat.	J Genet Genomics			2020		
48379	32535325	Tu R., Wang H., Liu Q., Wang D., Zhou X., Xu P., Zhang Y., Wu W., Chen D., Cao L., Cheng S., Shen X.	Characterization and genetic analysis of the OsHPL3 rice lesion mimic mutant showing spontaneous cell death and enhanced bacterial blight resistance.	Plant Physiol. Biochem.	154	94-104	2020		
48380	32275774	Zhang F., Shen Y., Miao C., Cao Y., Shi W., Du G., Tang D., Li Y., Luo Q., Cheng Z.	OsRAD51D promotes homologous pairing and recombination by preventing nonhomologous interactions in rice meiosis.	New Phytol.	227(3)	824-839	2020	RAD51C,PAIR2,RAD51D,DMC1B,DMC1A,COM1	OsRAD51C, OsRad51C, RAD51C-1, RAD51C-2, RAD51C-3,Pair2, OsPAIR2, OsASY1,OsRAD51D, OsRad51D, OsRAD51D.1, OsRAD51D.2, OsRAD51D.3,OsDMC1B, OsDmc1B, Dmc1B, RiLIM15B ,OsDMC1A, OsDmc1A, Dmc1A, DMC1, OsDMC1, RiLIM15A, OsRad51,OsCOM1
48381	32601191	Xiang N., Guo C., Liu J., Xu H., Dixon R., Yang J., Wang Y.P.	Using synthetic biology to overcome barriers to stable expression of nitrogenase in eukaryotic organelles.	Proc. Natl. Acad. Sci. U.S.A.	117(28)	16537-16545	2020		
48382	32518116	Zhang Z., Gou X., Xun H., Bian Y., Ma X., Li J., Li N., Gong L., Feldman M., Liu B., Levy A.A.	Homoeologous exchanges occur through intragenic recombination generating novel transcripts and proteins in wheat and other polyploids.	Proc. Natl. Acad. Sci. U.S.A.	117(25)	14561-14571	2020		
48383	32586957	Wang S., Chen A., Xie K., Yang X., Luo Z., Chen J., Zeng D., Ren Y., Yang C., Wang L., Feng H., L?pez-Arredondo DL., Herrera-Estrella LR., Xu G.	Functional analysis of the OsNPF4.5 nitrate transporter reveals a conserved mycorrhizal pathway of nitrogen acquisition in plants.	Proc. Natl. Acad. Sci. U.S.A.	117(28)	16649-16659	2020	AMT3;1,NPF4.5,NAR2.1	OsAMT3;1, AMT3-1, OsAMT3.1, OsAMT2;2,PTR, OsNPF4.5,OsNAR2.1, OsNRT3.1A
48384	32580009	Zhang Z., Li Y., Huang K., Xu W., Zhang C., Yuan H.	Genome-wide systematic characterization and expression analysis of the phosphatidylinositol 4-phosphate 5-kinases in plants.	Gene	756	144915	2020		
48385	32493747	N?tzmann HW., Doerr D., Ram?rez-Colmenero A., Sotelo-Fonseca JE., Wegel E., Di Stefano M., Wingett S.W., Fraser P., Hurst L., Fernandez-Valverde SL., Osbourn A.	Active and repressed biosynthetic gene clusters have spatially distinct chromosome states.	Proc. Natl. Acad. Sci. U.S.A.	117(24)	13800-13809	2020		
48386	32771142	Zhang H., Jing W., Zheng J., Jin Y., Wu D., Cao C., Dong Y., Shi X., Zhang W.	The ATP-binding cassette transporter OsPDR1 regulates plant growth and pathogen resistance by affecting jasmonates biosynthesis in rice.	Plant Sci.	298	110582	2020	PDR1	OsABCG45, OsPDR1, FCO1, OsPDR1.2, OsPDR1.3, OsPDR1.1
48387	32535959	Liu L., Kuang Y., Yan F., Li S., Ren B., Gosavi G., Spetz C., Li X., Wang X., Zhou X., Zhou H.	Developing a novel artificial rice germplasm for dinitroaniline herbicide resistance by base editing of OsTubA2.	Plant Biotechnol. J.			2020	TID1	OsTID1, TubA2, SRS5, OS-TubA2, OsTubA2, OsSRS5, 
48388	32525991	Yang A., Li Q., Chen L., Zhang W.H.	A rice small GTPase, OsRab6a, is involved in the regulation of grain yield and iron nutrition in response to CO2 enrichment.	J. Exp. Bot.			2020	NAS2,NAS1,IRT1,_	OsNAS2, OsNAS1,OsNAS1,OsIRT1, ZIP10, OsZIP10, OsZIP12, ZIP12,OsRab6B2, Rab6B2, OsRab6a, Rab6a
48389	32581114	Chen Y., Dan Z., Gao F., Chen P., Fan F., Li S.	Rice GROWTH-REGULATING FACTOR7 Modulates Plant Architecture through Regulating GA and IAA Metabolism.	Plant Physiol.			2020	CYP714B1,PIN1D,ARF3,GRF7,MIR396E,ARF8,SLRL1,ARF8,SLR1	OsCYP714B1,OsPIN1D, OsPIN1d,OsARF3, ETT3, Os ETT3, OsETT3, DLN20, OsDLN20, ARF4, OsARF3lb, ARF3lb,OsGRF7,miR396e, osa-miR396e, osa-MIR396e, OsmiR396e, OsmiR396e,OsARF8,OsSLRL1, OsGAI, OsSLRL, OsGRAS-1, OsGRAS1, GAI, SLRL, GRAS-1, GRAS1,OsARF8, OsARF12, ARF12,slr1-1, slr1, slr, GAI, OsGAI, OsSLR1, Os SLR1, OsRGA1, OsGRAS-18, OsGRAS-18, GRAS-18, GRAS18, SLR-1
48390	32541951	Li J., Yokosho K., Liu S., Cao H.R., Yamaji N., Zhu X.G., Liao H., Ma J.F., Chen Z.C.	Diel magnesium fluctuations in chloroplasts contribute to photosynthesis in rice.	Nat Plants	6(7)	848-859	2020	MRS2-6	OsMRS2-6, OsMGT3, MGT3
48391	32595669	Zhang Q., Xu Y., Huang J., Zhang K., Xiao H., Qin X., Zhu L., Zhu Y., Hu J.	The Rice Pentatricopeptide Repeat Protein PPR756 Is Involved in pollen Development by Affecting Multiple RNA Editing in Mitochondria.	Front Plant Sci	11	749	2020	PPR756,CCMC,MORF8A,_,NAD7,MORF8,MORF1	OsPPR756,ccmC, orf240,MORF8-like, OsMORF8a, MORF8a, OsMORF8-1, MORF8-1,atp6, N-atp6, B-ATP6, B-atp6, atp6-1,nad7,OsMORF8, OsMORF8b, MORF8b, OsMORF8-2, MORF8-2,OsMORF1
48392	32512821	Wu Q., Zhang C., Chen Y., Zhou K., Zhan Y., Jiang D.	OsCpn60beta1 is Essential for Chloroplast Development in Rice (<i>Oryza sativa</i> L.).	Int J Mol Sci	21(11)		2020	LFNR1,_,PSAK,PSBS1,_,_,_,_,PSBH,HDY1,PSAG,PETC,PSBQ,PSBR,RBCS3,_,PC,PSAE,PSB27,PSAH,PSB28,PSAD,PSBO,CPN60BETA1	OsLFNR1, LFNR2, Os-LFNR2, OsLFNR2, FNR, PetH-2,OsLFNR2, LFNR2, FNR, LFNR1, Os-LFNR1, OsLFNR1, PetH-1,PsaK, OsPSAK,OsPsbS1, PsbS1, psbS, OsPSBS,PsbE, OsPsbE,,,,psbH, psbF ,OsFdC2, FdC2, OsHDY1, PetF-2,PsaG, OsPSAG,PetC, OsPETC,PsbQ, OsPsbQ, psbQ, PsbQ-1,PsbR, OsPsbR1, PsbR1, OsPSBR,RbcS3, OsRBCS3, OsRbcS3, rbcS ,,OsPC, PetE, OsPETE, OsCPL1, CPL1,PsaE, OsPsaE,Psb27, OsPSB27, Psb27-H1,PsaH, GOS5, OsPSAH, OsGOS5,Psb28, OsPSB28,PsaD, OsPsaD,PsbO, psbO, OsPSBO,OsCPn60beta1, OsCPn60b1, CPn60b1
48393	32585013	Alfatih A., Wu J., Zhang Z.S., Xia J.Q., Jan S.U., Yu L.H., Xiang C.B.	rice NIN-LIKE PROTEIN 1 Rapidly Responds to Nitrogen Deficiency and Improves Yield and Nitrogen Use Efficiency.	J. Exp. Bot.			2020		
48394	32545174	Bhatnagar N., Kim R., Han S., Song J., Lee G.S., Lee S., Min M.K., Kim B.G.	Ectopic Expression of OsPYL/RCAR7, an ABA Receptor Having Low Signaling Activity, Improves drought tolerance without Growth Defects in Rice.	Int J Mol Sci	21(11)		2020	PYL/RCAR3,ABI1,PP2C9,PYL/RCAR7,PYL/RCAR5,PP2C30,PP2C8,PP2C1	OsPYL/RCAR3, PYL3, OsPYL3, OsPYL10, PYL10, OsRCAR1, RCAR1 ,OsPP2C51, PP2C51, OsPP79, PP79, OsABI1,OsPP15, PP15, OsPP2C09, PP2C09, OsPP2C9, OsPP2C3,OsPYL/RCAR7, PYL7, OsPYL7, OsPYL8, PYL8, OsEnS-90, RCAR1, OsRCAR1,OsPYL/RCAR5, PYL5, OsPYL5, OsPYL11, PYL11,OsPP2C30, OsPP48, PP48,OsPP2C08, PP2C08, OsPP2C8, OsPP12,OsPP2C1, OsSIPP2C1, SIPP2C1, OsPP2C68, PP2C68, OsPP108
48395	32542348	Chang J.D., Huang S., Konishi N., Wang P., Chen J., Huang X.Y., Ma J.F., Zhao F.J.	Overexpression of the manganese/cadmium transporter OsNRAMP5 reduces cadmium accumulation in rice grain.	J. Exp. Bot.			2020		
48396	32554473	Osnato M., Matias-Hernandez L., Aguilar-Jaramillo AE., Kater M.M., Pelaz S.	Genes of the <i>RAV</i> Family Control Heading Date and Carpel Development in Rice.	Plant Physiol.	183(4)	1663-1680	2020	PAP2,AP2/EREBP127,AP2/EREBP129,MADS50,MADS18,EF1,AP2/EREBP96,MADS51,RAP1B,HD3A,AP2/EREBP77,RAP1A,MADS13,LHS1	MADS34, OsMADS34, RMADS212/RMADS217/RMADS221, OsPAP2/MADS34, MADS34/PAP2, PAP2/OsMADS34, OsMADS34/PAP2, OsMADS19,AP2/EREBP#127, OsRAV11, RAV11, OsRAV1, RAV1,AP2/EREBP#129, OsRAV2, RAV2, OsRAV9/OsTEM1, OsRAV9/OsTEM1, OsRAV9, OsTEM1, RAV9, TEM1,OsMADS50, AGL20, SOC1, OsSOC1, RMADS208, OsSOC1/ OsMADS50/DTH3, DTH3, OsDTH3,OsMADS18, MADS2, OsMADS2, MADS28, OsMADS28, FDRMADS7, OsMADS18/28,Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,AP2/EREBP#096, OsRAV12, RAV12, OsEREBP96, EREBP96,OsMADS51, OsMADS65, MADS65, qHd1, DLN36, OsDLN36,MADS14, OsMADS14, FDRMADS6, RMADS211, AGL10,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,AP2/EREBP#077, OsRAV1, RAV1, OsRAV8, RAV8,OsMADS15, FDRMADS3, RMADS215, MADS15, DEP,OsMADS13, MAF1, RMADS206,OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO, OsLHS1, OsLG3b, LG3b, qLGY3, LGY3, DLN80, OsDLN80, OLR, OsOLR, GW3p6, OsGW3p6, OsMADS1GW3p6, MADS1GW3p6, qLGY3/OsLG3b/GW3p6
48397	32575555	Feng X., Zhang L., Wei X., Zhou Y., Dai Y., Zhu Z.	OsJAZ13 Negatively Regulates Jasmonate Signaling and Activates Hypersensitive Cell Death Response in Rice.	Int J Mol Sci	21(12)		2020	BHLH9,ERF77,NH1,PR10A,_,_,_,HSR203J,ERF47,TIFY11E,ERF93,PR1B,AOS1,AOC,PR4C,EIL1A,_,_,WD40-66,COI1	OsbHLH009, bHLH009, OsMYC2, MYC2,OsAP2-39, AP2-39, OsERF#077, OsERF077, OsERF77, AP2/EREBP#149, AP2/EREBP149, DLN121, OsDLN121,OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2, DLN5, OsDLN5,  OsBTBA1, BTBA1,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsPR2,OscytME3, OsEnS-13, NADP-ME, OsNADP-ME,OsNINJA1, NINJA1, OsNINJA2, OsNINJA, NINJA,OsHSR203J,OsERF#047, OsERF047, OsERF47, AP2/EREBP#121, AP2/EREBP121,OsJAZ 13, OsJAZ13,JAZ13, OsTIFY11e, OsJAZ13a, OsJAZ13b, OsJAZ13c, OsJAZ13d,OsERF1, ERF1, OsERF#093, OsERF093, OsERF93, AP2/EREBP#168, AP2/EREBP168,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1, OsPR1a, PR1a,OsAOS, OsAOS1, CYP74A1, OsAOS2, AOS2,OsAOC, AOC1, OsAOC1, HB, CPM2, OsAOC4, AOC4,OsPR4c,EIL1, OsEIL1, EIL1a, OsEIL1a, MHZ6/OsEIL1, MHZ6, OsMHZ6,C10728, OsChib3a, Chib3a, OsPR31, PR31, PR8, OsPR8,OsLP, PR-5, 14b,OsWD40-66, TPR3, OsTPR3, TPR1, OsTRP1, OsTPR3, OsTPL2, TPL2, OsTPL, TPL,OsCOI1a, OsCOI1, Os_F0728, COI1a, F0728,  OsFBL4, FBL4
48398	32488648	Liu Y., Pan T., Tang Y., Zhuang Y., Liu Z., Li P., Li H., Huang W., Tu S., Ren G., Wang T., Wang S.	Proteomic Analysis of Rice Subjected to Low Light Stress and Overexpression of OsGAPB Increases the Stress Tolerance.	Rice (N Y)	13(1)	30	2020	_	GADPH, OsGAPDHB, GAPDHB, OsGAPB, GAPB
48399	32619642	Pang J., Zhou J., Yang D.	Knock-in at GluA1 locus improves recombinant human serum albumin expression in rice grain.	J. Biotechnol.	321	87-95	2020		
48400	32227093	Choi N., Im J.H., Lee E., Lee J., Choi C., Park S.R., Hwang D.J.	WRKY10 transcriptional regulatory cascades in rice are involved in basal defense and Xa1-mediated resistance.	J. Exp. Bot.	71(12)	3735-3748	2020		
48401	32560825	Jiao Z., Xu W., Zeng X., Xu X., Zhang M., Xia K.	obtusifoliol 14alpha-demethylase OsCYP51G1 is involved in phytosterol synthesis and affects pollen and seed development.	Biochem. Biophys. Res. Commun.	529(1)	91-96	2020		
48402	32622271	Loss Sperandio MV., Santos L.A., Huertas Tavares OC., Fernandes M.S., de Freitas Lima M., de Souza SR.	Silencing the Oryza sativa plasma membrane H+-ATPase isoform OsA2 affects grain yield and shoot growth and decreases nitrogen concentration.	J. Plant Physiol.	251	153220	2020		
48403	32582228	Fan T., Yang W., Zeng X., Xu X., Xu Y., Fan X., Luo M., Tian C., Xia K., Zhang M.	A Rice Autophagy Gene <i>OsATG8b</i> Is Involved in Nitrogen Remobilization and Control of Grain Quality.	Front Plant Sci	11	588	2020	ATG8B	OsATG8b, Atg8b
48404	32569443	Tang Z., Gao X., Zhan X., Fang N., Wang R., Zhan C., Zhang J., Cai G., Cheng J., Bao Y., Zhang H., Huang J.	Natural variation in OsGASR7 regulates grain length in rice.	Plant Biotechnol. J.			2020	GW6	OsGSR1, GSR1, OsGASR7, GASR7, OsGW6, OsGASR7/GW6
48405	32527735	Cui Y., Lu S., Li Z., Cheng J., Hu P., Zhu T., Wang X., Jin M., Wang X., Li L., Huang S., Zou B., Hua J.	CYCLIC NUCLEOTIDE-GATED ION CHANNELs 14 and 16 Promote Tolerance to Heat and Chilling in Rice.	Plant Physiol.	183(4)	1794-1808	2020	CNGC7,CNGC9	OsCNGC7, OsCNGC14, CNGC14 ,OsCNGC9, OsCNGC16, CNGC16
48406	32552330	Shi F., Wang M., An Y.	Overexpression of a B-type cytokinin response regulator (<i>OsORR2</i>) reduces plant height in rice.	Plant Signal Behav	15(8)	1780405	2020		
48407	32598036	Ye M., Kuai P., Hu L., Ye M., Sun H., Erb M., Lou Y.	Suppression of a leucine-rich repeat receptor-like kinase enhances host plant resistance to a specialist herbivore.	Plant Cell Environ.			2020	LRR-RLK2	OsLRR-RLK2
48408	32581115	Mo W., Tang W., Du Y., Jing Y., Bu Q., Lin R.	PHYTOCHROME-INTERACTING FACTOR-LIKE14 and SLENDER RICE1 interaction controls seedling growth under salt stress.	Plant Physiol.			2020	SLR1,EXPA4,CSLD3,PIL14	slr1-1, slr1, slr, GAI, OsGAI, OsSLR1, Os SLR1, OsRGA1, OsGRAS-18, OsGRAS-18, GRAS-18, GRAS18, SLR-1,OsEXP4 (Os-EXP4), OsEXPA4, OsEXP4, Os-EXP4, OsaEXPa1.22,OsCSLD3,OsPIL14, OsbHLH104, bHLH104, OsPIF14, PIF14, OsPIF14alpha, OsPIF14beta
48409	32561778	Yuan J., Wang X., Zhao Y., Khan N.U., Zhao Z., Zhang Y., Wen X., Tang F., Wang F., Li Z.	Genetic basis and identification of candidate genes for salt tolerance in rice by GWAS.	Sci Rep	10(1)	9958	2020	STL1,STL2	SRZ4, OsSRZ4, OsSTL1,OsSTL2, OsCDC48-3, CDC48-3
48410	32499482	Shin D., Lee S., Kim T.H., Lee J.H., Park J., Lee J., Lee J.Y., Cho L.H., Choi J.Y., Lee W., Park J.H., Lee D.W., Ito H., Kim D.H., Tanaka A., Cho J.H., Song Y.C., Hwang D., Purugganan M.D., Jeon J.S., An G., Nam H.G.	Natural variations at the Stay-Green gene promoter control lifespan and yield in rice cultivars.	Nat Commun	11(1)	2819	2020	SGR	sgr(t), sgr, OsSGR, OsSgr, SGR1, OsSGR1
48411	32595674	Zhou D., Li T., Yang Y., Qu Z., Ouyang L., Jiang Z., Lin X., Zhu C., Peng L., Fu J., Peng X., Bian J., Tang W., Xu J., He H.	<i>OsPLS4</i> Is Involved in Cuticular Wax Biosynthesis and Affects leaf senescence in Rice.	Front Plant Sci	11	782	2020	PAS2,NYC3,NYC4,NOL,PLS4,EAS1 ,NYC1,FDH2,COLD1,_,ERF3,PRX16,CER10,_,CER7,RCCR1,OBF1,CATB,KCR1,APX1,APX2	OsPAS2,nyc3, OsNYC3, PPH,OsNYC4, THF1, OsTHF1,nol, NOL1, OsNOL, OsNOL1,OsPLS4,OsPAO, PAO, OsACD1, ACD1, OsEAS1, RCD2, OsRCD2,nyc1, OsNYC1,OsFDH2,OsCOLD1,prx41, OsPrx41, OsPOX8.1, POX8.1, OsPOD2, POD2,Os02ERF, OsSHN1, OsWR1, WR1, OsERF#003, OsERF003, OsERF3, AP2/EREBP#012, AP2/EREBP12,prx16, OsPRX16, OsPOD1, POD1,OsCER10,OsFbox232, Os_F0576, Ctb1, OsCtb1,  OsFBK15, FBK15,OsCER7,OsRCCR1, OsRCCR, RCCR,OsOBF1, OsbZIP87,CatB, CAT-B, OsCatB, OsCATB, OsCAT1B, CAT1B, CAT2, OsCAT2,OsKCR1, OsWSL3, WSL3,OsAPX1, APXa, OsAPXa, OsAPx01, OsAPx1, OSAPX1, APx1, cAPX, APX2, cAPXa, OscAPXa,OsAPX2, OsAPx02, APXb, OsAPx2, OSAPX2, APx2, cAPX, OsAPX1, APX1
48412	32488145	Zhou R., Hu Q., Pu Q., Chen M., Zhu X., Gao C., Zhou G., Liu L., Wang Z., Yang J., Zhang J., Cao Y.	Spermidine Enhanced Free Polyamine Levels and Expression of Polyamine Biosynthesis Enzyme Gene in Rice Spikelets under Heat Tolerance before Heading.	Sci Rep	10(1)	8976	2020	SAMDC2,ADC1,SPDS1,ODCB,SPMS2	SamDC2, AdoMetDC2, OsSAMDC2,OsADC1, ARGDC, ADC, OsAdc1,OsSPDS1, OsSPDS, SPDS,ODCb, OsODC3, ODC3, OsODC1, ODC1,OsSPMS2, OsSPDS3, SPDS3
48413	32583432	Huang W., Zhang Y., Shen L., Fang Q., Liu Q., Gong C., Zhang C., Zhou Y., Mao C., Zhu Y., Zhang J., Chen H., Zhang Y., Lin Y., Bock R., Zhou F.	Accumulation of the RNA polymerase subunit RpoB depends on RNA editing by OsPPR16 and affects chloroplast development during early leaf development in rice.	New Phytol.			2020	YGL10,YGL1,FGL,DVR,RPOB,RPOC2,HEMA,RPOC1,YGL98,PPR16	CAO, OsCAO, CAO1, OsCAO1, Oslls1, Lls1, DVR, PGL,OsYGL1, CHLG, Ygl1, CS, OsCHLG,fgl(fl), fl, fgl, OsFGL, OsPorB, PoPA, PORA, porA, OsPORA, PORB, OsPORB,OsDVR,rpoB, RpoB, Rpobeta,rpoC2, RPO beta", RPObeta",HEMA1, OsHEMA, GluTR, OsHEMA1, hemA,rpoC1, RPO beta', RPObeta', OsRPOC1,OsChlD, ChlD, CHLD, OsCHLD, Ygl7, YGL3, OsvWA12, vWA12,OsPPR16
48414	32595655	Zafar K., Khan M.Z., Amin I., Mukhtar Z., Yasmin S., Arif M., Ejaz K., Mansoor S.	Precise CRISPR-Cas9 Mediated Genome Editing in Super Basmati Rice for Resistance Against Bacterial Blight by Targeting the Major Susceptibility Gene.	Front Plant Sci	11	575	2020	XA41	OsSWEET14, SWEET14, Os11N3, Os-11N3, 11N3, Xa41(t), xa41, Os11N3/SWEET14, OsSWEET14/Os11N3
48415	32771171	Wang Q., Lin Q., Wu T., Duan E., Huang Y., Yang C., Mou C., Lan J., Zhou C., Xie K., Liu X., Zhang X., Guo X., Wang J., Jiang L., Wan J.	OsDOG1L-3 regulates seed dormancy through the abscisic acid pathway in rice.	Plant Sci.	298	110570	2020		
48416	32771139	Chen R., Xu N., Yu B., Wu Q., Li X., Wang G., Huang J.	The WUSCHEL-related homeobox transcription factor OsWOX4 controls the primary root elongation by activating OsAUX1 in rice.	Plant Sci.	298	110575	2020	PIN5A,WOX4,RAU1,MADS25,RAU4,_,RAU2,RAU3,QHB,YUCCA2,YUCCA3,YUCCA4,PIN1C,PIN1B,CYCB1;1	OsPIN5a, OsPIN6,OsWOX4, Os WOX4,OsLAX1, OsRAU1, OsAUX1, LAX1, AUX1,OsMADS25,OsLAX4, OsRAU4, OsAUX4, LAX4, AUX4,OsLAX5, OsAUX5, LAX5, AUX5,OsLAX2, OsRAU2, OsAUX3, LAX2, AUX3 ,OsLAX3, OsRAU3, OsAUX2, LAX3, AUX2, OsAUX3, AUX3, ARF2,OsQHB, OsWOX9, WOX9, WOX5, Os WOX5, OsWOX5, QHB/OsWOX9,OsYUCCA2, OsYUC2, YUC2,OsYUCCA3, OsYUC3, YUC3,OsYUCCA4, OsYUC4, YUC4, YUCCA6, OsYUCCA6,PIN1B, OsPIN1B, OsPIN1b, OsPIN1c,PIN1A, OsPIN1A, OsPIN1a, REH1, OsPIN1, OsPIN1b, REH1/OsPIN1,CycB1;1, CycB1;os;1, Orysa;CycB1;1, OsCycB1;1, CyclaZm, CYCIaZm, OsCYCIaZm, OsCYCB1;4
48417	32563042	Wu M., Liu R., Gao Y., Xiong R., Shi Y., Xiang Y.	PheASR2, a novel stress-responsive transcription factor from moso bamboo (Phyllostachys edulis), enhances drought tolerance in transgenic rice via increased sensitivity to abscisic acid.	Plant Physiol. Biochem.	154	184-194	2020		
48418	32582301	Chen H., Zhao X., Zhai L., Shao K., Jiang K., Shen C., Chen K., Wang S., Wang Y., Xu J.	Genetic Bases of the Stomata-Related Traits Revealed by a Genome-Wide Association Analysis in Rice (<i>Oryza sativa</i> L.).	Front Genet	11	611	2020		
48419	32566413	Wang Y., Li J., Xiang S., Zhou J., Peng X., Hai Y., Wang Y., Li S., Wei S.	A putative effector UvHrip1 inhibits BAX-triggered cell death in <i>Nicotiana benthamiana</i>, and infection of <i>Ustilaginoidea virens</i> suppresses defense-related genes expression.	PeerJ	8	e9354	2020	PR1-12,PR10B	OsPR1#012, PR1#012, OsPR1-12, OsPR1.1, PR1.1,RPR10b, PR-10b, PR10b, PBZ1, PBZ-1, OsPBZc, OsPR10b, BetV, OsBetV
48420	32521717	Zhang Y., Zhao L., Xiao H., Chew J., Xiang J., Qian K., Fan X.	Knockdown of a Novel Gene <i>OsTBP2.2</i> Increases Sensitivity to Drought Stress in Rice.	Genes (Basel)	11(6)		2020	PIZT,RCCR1,RLCK135,DREB2A,GHR1,TBP2.2,_,PIP2;6,EAS1 	Piz-t, Pi-zt, Pi-z(t), Pi2/Pizt, Pizt, Pi9, OsPiz-t,OsRCCR1, OsRCCR, RCCR,OsRLCK135, OsLecRK3, LecRK3, SDRLK-LecRK3, OsSDRLK-LecRK3,OsDREB2A, OsDREB2a, ERF40, OsERF#040, OsERF040, OsERF40, AP2/EREBP#167, AP2/EREBP167,OsGHR1,OsTBP2.2,OsZFP6, ZFP6,OsPIP2;6, PIP2-6, OsPIP2-6, PIP2-5, OsPIP2-5,OsPAO, PAO, OsACD1, ACD1, OsEAS1, RCD2, OsRCD2
48421	32504260	Liu X., Wu D., Shan T., Xu S., Qin R., Li H., Negm M., Wu D., Li J.	The trihelix transcription factor OsGTgamma-2 is involved adaption to salt stress in rice.	Plant Mol. Biol.	103(4-5)	545-560	2020		
48422	32592489	Zhang H., Guo F., Qi P., Huang Y., Xie Y., Xu L., Han N., Xu L., Bian H.	OsHDA710-mediated Histone Deacetylation Regulates Callus Formation of Rice Mature Embryo.	Plant Cell Physiol.			2020		
48423	32523127	Jagadhesan B., Sathee L., Meena H.S., Jha S.K., Chinnusamy V., Kumar A., Kumar S.	Genome wide analysis of NLP transcription factors reveals their role in nitrogen stress tolerance of rice.	Sci Rep	10(1)	9368	2020	NLP2,NLP3,GLN1;2,NRT1,PTR6,GDH2,NRT1.7,_,GLT1,NLP4,NLP6,NLP5,NLP1	OsNLP2,OsNLP3,OsGLN1;2, GSr, RGS8, OsGS1;2, GS1;2, GS1, OsGS1-2, GS1-2, OsGS1.2, GS1.2,OsNRT1, OsNRT1;1, OsNRT1.1, OsNRT1.1a, OsNRT1.1b, NRT1.1, NRT1.1a, NRT1.1b, OsNPF8.9, NPF8.9 , OsNRT1.1B,OsPTR6, OsNRT1;2, NRT1;2, OsNPF7.3, NPF7.3 ,OsGDH2,OsNRT1.7,OsNRT1.5, NRT1.5 ,OsGLT1, OsNADH-GOGAT1, NADH-GOGAT1, OsNADH-GOGAT, GOGAT, NADH-GOGAT, OsGOGAT1, GOGAT1, OsGLU1,OsNLP4, NLP4.1, NLP4.2,OsNLP6, NLP6.1,OsNLP5, NLP5.1, NLP5.2, NLP5.3, NLP5.4, NLP5.5,OsNLP1
48424	32524307	Li X.P., Ma X.C., Wang H., Zhu Y., Liu X.X., Li T.T., Zheng Y.P., Zhao J.Q., Zhang J.W., Huang Y.Y., Pu M., Feng H., Fan J., Li Y., Wang W.M.	Osa-miR162a fine-tunes rice resistance to Magnaporthe oryzae and Yield.	Rice (N Y)	13(1)	38	2020	NAC4,KS4,DCL1,DUF292,MIR162A	OsNAC4, NAC68, ONAC068, OnNAC4*, OnNAC4, OsNAC4/ONAC068,OsKS4, KS4, KSL4, OsKSL4, DTS2, OsDTS2, OsTPS16, TPS16, TPS8, OsTPS8,Dcl1, OsDCL1, osDCL1, Os-DCL1, OsDCL1a, DCL1a,OsDUF292,miR162a, osa-miR162a, osa-MIR162a, OsMIR162a
48425	32506235	Rohilla M., Singh N., Mazumder A., Sen P., Roy P., Chowdhury D., Singh N.K., Mondal T.K.	Genome-wide association studies using 50?K rice genic SNP chip unveil genetic architecture for anaerobic germination of deep-water rice population of Assam, India.	Mol. Genet. Genomics	295(5)	1211-1226	2020		
48426	32554471	Zhang F., Ma L., Zhang C., Du G., Shen Y., Tang D., Li Y., Yu H., Ma B., Cheng Z.	The SUN Domain Proteins OsSUN1 and OsSUN2 Play Critical but Partially Redundant Roles in Meiosis.	Plant Physiol.	183(4)	1517-1530	2020	_,SUN1,SINE1,ZYGO1,WIP,TOP6A1,HEI10,PSS1,SINE2,ZEP1	OsSAD1, SAD1, OsSUN2, SUN2, OsSUN1, SUN1,OsSUN1, OsSUN2, SUN2,OsSINE1,Os_F0777, OsZYGO1,OsWIP,OsTOP6A1, OsSPO11-1, OsSPO11A, SPO11-1,HEI10A, HEI10B, OsHEI10,  OsRING434, RING434,pss1, OsPSS1,OsSINE2,OsZEP1
48427	31984381	Wahyuni W.T., Putra B.R., Marken F.	Voltammetric detection of vitamin B1 (thiamine) in neutral solution at a glassy carbon electrode via in situ pH modulation.	Analyst	145(5)	1903-1909	2020		
48428	32170463	Li G., Zhang C., Zhang G., Fu W., Feng B., Chen T., Peng S., Tao L., Fu G.	Abscisic Acid Negatively Modulates heat tolerance in Rolled Leaf Rice by Increasing Leaf Temperature and Regulating Energy Homeostasis.	Rice (N Y)	13(1)	18	2020		
48429	32210167	Tang J., Zhang R., Li H., Zhang J., Chen S., Lu B.	Effect of the Applied Fertilization Method under Full Straw Return on the Growth of Mechanically Transplanted Rice.	Plants (Basel)	9(3)		2020		
48430	31957138	Liu C., Ding S., Zhang A., Hong K., Jiang H., Yang S., Ruan B., Zhang B., Dong G., Guo L., Zeng D., Qian Q., Gao Z.	Development of nutritious rice with high zinc/selenium and low cadmium in grains through QTL pyramiding.	J Integr Plant Biol	62(3)	349-359	2020		
48431	32138670	Hu L., Yao Y., Cai R., Pan L., Liu K., Bai L.	Effects of fenclorim on rice physiology, gene transcription and pretilachlor detoxification ability.	BMC Plant Biol.	20(1)	100	2020		
48432	32245192	Liang T., Chi W., Huang L., Qu M., Zhang S., Chen Z.Q., Chen Z.J., Tian D., Gui Y., Chen X., Wang Z., Tang W., Chen S.	Bulked Segregant Analysis Coupled with Whole-Genome Sequencing (BSA-Seq) Mapping Identifies a Novel <i>Pi21</i> Haplotype Conferring Basal Resistance to Rice blast disease.	Int J Mol Sci	21(6)		2020		
48433	32184398	Yan J., Hong S., Guan Z., He W., Zhang D., Yin P.	Structural insights into sequence-dependent Holliday junction resolution by the chloroplast resolvase MOC1.	Nat Commun	11(1)	1417	2020		
48434	32224370	Liu X., Huang Z., Li Y., Xie W., Li W., Tang X., Ashraf U., Kong L., Wu L., Wang S., Mo Z.	Selenium-silicon (Se-Si) induced modulations in physio-biochemical responses, grain yield, quality, aroma formation and lodging in fragrant rice.	Ecotoxicol. Environ. Saf.	196	110525	2020		
48435	32140886	Sun Q., Li D.D., Chu J., Yuan P., Li S., Zhong L.J., Han X., Xuan Y.H.	Indeterminate Domain Proteins Regulate Rice Defense to Sheath Blight Disease.	Rice (N Y)	13(1)	15	2020		
48436	32251298	Singh J., Gupta S.K., Devanna B.N., Singh S., Upadhyay A., Sharma T.R.	Blast resistance gene Pi54 over-expressed in rice to understand its cellular and sub-cellular localization and response to different pathogens.	Sci Rep	10(1)	5243	2020		
48437	32165659	Tyagi W., Yumnam J.S., Sen D., Rai M.	Root transcriptome reveals efficient cell signaling and energy conservation key to aluminum toxicity tolerance in acidic soil adapted rice genotype.	Sci Rep	10(1)	4580	2020		
48438	32206941	Goad D.M., Jia Y., Gibbons A., Liu Y., Gealy D., Caicedo A.L., Olsen K.M.	Identification of Novel QTL Conferring Sheath Blight Resistance in Two Weedy Rice Mapping Populations.	Rice (N Y)	13(1)	21	2020		
48439	32362750	Luo Y., Tian D., Teo J.C.Y., Ong K.H., Yin Z.	Inactivation of retrotransposon <i>Tos17</i>Chr.7 in rice cultivar Nipponbare through CRISPR/Cas9-mediated gene editing.	Plant Biotechnol (Tokyo)	37(1)	69-75	2020		
48440	32235549	Hwang O.J., Kang K., Back K.	Effects of Light Quality and Phytochrome Form on Melatonin Biosynthesis in Rice.	Biomolecules	10(4)		2020		
48441	32134151	Wang Z., Hong Y., Zhu G., Li Y., Niu Q., Yao J., Hua K., Bai J., Zhu Y., Shi H., Huang S., Zhu J.K.	Loss of salt tolerance during tomato domestication conferred by variation in a Na+ /K+ transporter.	EMBO J.	39(10)	e103256	2020		
48442	32143437	Huang J., Sun W., Ren J., Yang R., Fan J., Li Y., Wang X., Joseph S., Deng W., Zhai L.	Genome-Wide Identification and Characterization of Actin-depolymerizing factor (<i>ADF</i>) Family Genes and Expression Analysis of Responses to Various Stresses in <i>Zea Mays</i> L.	Int J Mol Sci	21(5)		2020		
48443	32608655	Liu S.J., Huang Y.Z., Bao Q.L., Huang Y.C., Zhang S.N., Han N., Liu Y.R., Hu H.Q.	[Effects of Exogenous Spermidine on Seed Germination and As Uptake and Accumulation of Rice Under As5+ Stress].	Huan Jing Ke Xue	41(3)	1505-1512	2020		
48444	32181107	Khandagale K.S., Chavhan R., Nadaf A.B.	RNAi-mediated down regulation of <i>BADH2</i> gene for expression of 2-acetyl-1-pyrroline in non-scented <i>indica</i> rice IR-64 (<i>Oryza sativa</i> L.).	3 Biotech	10(4)	145	2020		
48445	32188023	Zou T., Zhou D., Li W., Yuan G., Tao Y., He Z., Zhang X., Deng Q., Wang S., Zheng A., Zhu J., Liang Y., Liu H., Wang A., Wang L., Li P., Li S.	A Silent Exonic Mutation in a Rice Integrin-alpha FG-GAP Repeat-Containing Gene Causes Male-Sterility by Affecting mRNA Splicing.	Int J Mol Sci	21(6)		2020		
48446	32170871	Li C.Z., Sun H., Gao Q., Bian F.Y., Noman A., Xiao W.H., Zhou G.X., Lou Y.G.	Host plants alter their volatiles to help a solitary egg parasitoid distinguish habitats with parasitized hosts from those without.	Plant Cell Environ.	43(7)	1740-1750	2020		
48447	32155857	D?az K., Espinoza L., Carvajal R., Conde-Gonz?lez M., Niebla V., Olea A.F., Coll Y.	Biological Activities and Molecular Docking of Brassinosteroids 24-Norcholane Type Analogs.	Int J Mol Sci	21(5)		2020		
48448	32131496	Shim K.C., Kim S.H., Jeon Y.A., Lee H.S., Adeva C., Kang J.W., Kim H.J., Tai T.H., Ahn S.N.	A RING-Type E3 Ubiquitin ligase, <i>OsGW2,</i> Controls chlorophyll content and Dark-Induced Senescence in Rice.	Int J Mol Sci	21(5)		2020		
48449	32184449	Guttikonda H., Thummala S.R., Agarwal S., Mangrauthia S.K., Ramanan R., Neelamraju S.	Genome-wide transcriptome profile of rice hybrids with and without Oryza rufipogon introgression reveals candidate genes for yield.	Sci Rep	10(1)	4873	2020		
48450	31747007	Yu E., Yamaji N., Ma J.F.	Altered Root Structure Affects Both Expression and Cellular Localization of Transporters for Mineral Element Uptake in Rice.	Plant Cell Physiol.	61(3)	481-491	2020		
48451	32362748	Suzuki R., Imamura T., Nonaga Y., Kusano H., Teramura H., Sekine K.T., Yamashita T., Shimada H.	A novel FLOURY ENDOSPERM2 (FLO2)-interacting protein, is involved in maintaining fertility and seed quality in rice.	Plant Biotechnol (Tokyo)	37(1)	47-55	2020	FLOC1,CDP3.2,CDP3.2	OsEnS-51, OsFLOC1, OsCDP3.5, CDP3.5,OsCDP3.2, FLOC3, OsFLOC3, OsCDP3.3, CDP3.3,FLOC2, OsFLOC2, OsCDP3.2
48452	32183693	Zhai R., Ye S., Zhu G., Lu Y., Ye J., Yu F., Chu Q., Zhang X.	Identification and integrated analysis of glyphosate stress-responsive microRNAs, lncRNAs, and mRNAs in rice using genome-wide high-throughput sequencing.	BMC Genomics	21(1)	238	2020		
48453	31898928	Pillai S.E., Kumar C., Dasgupta M., Kumar B.K., Vungarala S., Patel H.K., Sonti R.V.	Ectopic Expression of a Cell-Wall-Degrading Enzyme-Induced <i>OsAP2/ERF152</i> Leads to Resistance against Bacterial and Fungal Infection in <i>Arabidopsis</i>.	Phytopathology	110(4)	726-733	2020		
48454	32377039	Gouda G., Gupta M.K., Donde R., Mohapatra T., Vadde R., Behera L.	Marker-assisted selection for grain number and yield-related traits of rice (<i>Oryza sativa</i> L.).	Physiol Mol Biol Plants	26(5)	885-898	2020		
48455	32168778	Li D., Xu R., Lv D., Zhang C., Yang H., Zhang J., Wen J., Li C., Tan X.	Identification of the Core pollen-Specific Regulation in the Rice <i>OsSUT3</i> Promoter.	Int J Mol Sci	21(6)		2020		
48456	32164164	Qiu S., Zeng B.	Advances in Understanding the Acyl-CoA-binding protein in Plants, Mammals, Yeast, and Filamentous Fungi.	J Fungi (Basel)	6(1)		2020		
48457	32179779	Singh D.P., Singh V., Gupta V.K., Shukla R., Prabha R., Sarma B.K., Patel J.S.	Microbial inoculation in rice regulates antioxidative reactions and defense related genes to mitigate drought stress.	Sci Rep	10(1)	4818	2020		
48458	32182813	Ma F., Zhang E., Li Q., Xu Q., Ou J., Yin H., Li K., Wang L., Zhao X., Niu X., Li X., Zhang S., Wang Y., Deng R., Zhou E., Zhang G.	A Plant-Produced Recombinant Fusion Protein-Based Newcastle Disease Subunit Vaccine and Rapid Differential Diagnosis Platform.	Vaccines (Basel)	8(1)		2020		
48459	32168953	Jiang L., Ramamoorthy R., Ramachandran S., Kumar P.P.	Systems Metabolic Alteration in a Semi-Dwarf Rice Mutant Induced by <i>OsCYP96B4</i> Gene Mutation.	Int J Mol Sci	21(6)		2020		
48460	32209971	Deng X., Han X., Yu S., Liu Z., Guo D., He Y., Li W., Tao Y., Sun C., Xu P., Liao Y., Chen X., Zhang H., Wu X.	<i>OsINV3</i> and Its Homolog, <i>OsINV2</i>, Control grain size.in Rice.	Int J Mol Sci	21(6)		2020		
48461	32193423	Becker M., Ngo N.S., Schenk M.K.A.	Silicon reduces the iron uptake in rice and induces iron homeostasis related genes.	Sci Rep	10(1)	5079	2020		
48462	32222484	Hu J., Sun S., Wang X.	Regulation of Shoot Branching by Strigolactones and Brassinosteroids: Conserved and Specific Functions of Arabidopsis BES1 and Rice BZR1.	Mol Plant	13(6)	808-810	2020		
48463	32170462	Meng X., Xiao G., Telebanco-Yanoria MJ., Siazon P.M., Padilla J., Opulencia R., Bigirimana J., Habarugira G., Wu J., Li M., Wang B., Lu G.D., Zhou B.	The broad-spectrum rice blast resistance (R) gene Pita2 encodes a novel R protein unique from Pita.	Rice (N Y)	13(1)	19	2020		
48464	32203774	Kaur J., Anand V., Srivastava S., Bist V., Tripathi P., Naseem M., Nand S., Anshu, Khare P., Srivastava P.K., Bisht S., Srivastava S.	Yeast strain Debaryomyces hansenii for amelioration of arsenic stress in rice.	Ecotoxicol. Environ. Saf.	195	110480	2020		
48465	32157461	Das S., Swetha C., Pachamuthu K., Nair A., Shivaprasad P.V.	Loss of function of Oryza sativa Argonaute 18 induces male sterility and reduction in phased small RNAs.	Plant Reproduction	33(1)	59-73	2020	AGO18	OsAGO18
48466	32232682	Zhang H., Xiao Y., Deng X., Feng H., Li Z., Zhang L., Chen H.	OsVPE3 Mediates GA-induced Programmed Cell Death in Rice Aleurone Layers via Interacting with Actin Microfilaments.	Rice (N Y)	13(1)	22	2020		
48467	32148415	Jang J.H., Lee O.R.	Overexpression of ginseng patatin-related phospholipase <i>pPLAIIIbeta</i> alters the polarity of cell growth and decreases lignin content in <i>Arabidopsis</i>.	J Ginseng Res	44(2)	321-331	2020		
48468	32222483	Wang Y., Shang L., Yu H., Zeng L., Hu J., Ni S., Rao Y., Li S., Chu J., Meng X., Wang L., Hu P., Yan J., Kang S., Qu M., Lin H., Wang T., Wang Q., Hu X., Chen H., Wang B., Gao Z., Guo L., Zeng D., Zhu X., Xiong G., Li J., Qian Q.	A Strigolactone Biosynthesis Gene Contributed to the Green Revolution in Rice.	Mol Plant	13(6)	923-932	2020		
48469	32188400	Shi W., Zhao S.L., Liu K., Sun Y.B., Ni Z.B., Zhang G.Y., Tang H.S., Zhu J.W., Wan B.J., Sun H.Q., Dai J.Y., Sun M.F., Yan G.H., Wang A.M., Zhu G.Y.	Comparison of leaf transcriptome in response to Rhizoctonia solani infection between resistant and susceptible rice cultivars.	BMC Genomics	21(1)	245	2020		
48470	32539998	Miyamoto T., Takada R., Tobimatsu Y., Suzuki S., Yamamura M., Osakabe K., Osakabe Y., Sakamoto M., Umezawa T.	Double knockout of OsWRKY36 and OsWRKY102 boosts lignification with altering culm morphology of rice.	Plant Sci.	296	110466	2020	WRKY102,SGSD3	OsWRKY102,OsWRKY36, WRKY36, OsSGSD3
48471	32718685	Zeng D., Cui J., Yin Y., Zhang M., Shan S., Liu M.Y., Cheng D., Lu W., Sun Y.	Proteomic analysis in different development stages on SP0 generation of rice seeds after space flight.	Life Sci Space Res (Amst)	26	34-45	2020		
48472	32238850	Wang W., Yu Z., Meng J., Zhou P., Luo T., Zhang J., Wu J., Lou Y.	Rice phenolamindes reduce the survival of female adults of the white-backed planthopper Sogatella furcifera.	Sci Rep	10(1)	5778	2020		
48473	32274603	Yu P., Jiang N., Fu W., Zheng G., Li G., Feng B., Chen T., Ma J., Li H., Tao L., Fu G.	ATP Hydrolysis Determines cold tolerance by Regulating Available Energy for Glutathione Synthesis in Rice Seedling Plants.	Rice (N Y)	13(1)	23	2020	SG1,_,SNRK1B,HSP24.1,HSP71.1,TOR,OSK1	OsSG1, OsSG1-1, OsSG1-2, OsSG1-3, GSH1, OsGSH1,OsECS, ECS, GSH2, OsGSH2,SnRK1B, OsSnRK1B, OsSnRK1.3, SnRK1.3, OsSnRK1alphaD, SnRK1alphaD,OsHsp24.1, OsHSP24.1,OsHsp71.1, OsHSP71.1, OsMED37_3, MED37_3 ,OsTOR,osk1, SnRK1A, OsSnRK1A, OsSNRK1a, SnRK1A/OSK1, SnRK1a, OsSnRK1.2, SnRK1.2, OsSnRK1alphaA, SnRK1alphaA
48474	32253516	Hsieh K.T., Liu S.H., Wang I.W., Chen L.J.	Phalaenopsis orchid miniaturization by overexpression of OsGA2ox6, a rice GA2-oxidase gene.	Botanical Studies	61(1)	10	2020		
48475	32347379	Amarasinghe Y.P.J., Kuwata R., Nishimura A., Phan P.D.T., Ishikawa R., Ishii T.	Evaluation of Domestication Loci Associated with Awnlessness in Cultivated Rice, Oryza sativa.	Rice (N Y)	13(1)	26	2020		
48476	32523401	Fujino K., Ikegaya T.	A novel genotype DATTO5 developed using the five genes exhibits the fastest heading date designed in rice.	Breed. Sci.	70(2)	193-199	2020	HD5,GHD7,SE1,HD2	Hd5(t)*, Hd5, qHD5, HAP3H, OsHAP3H, NF-YB, CBF-A, DTH8 , qHD5(t)*, Ghd8, Ghd8/DTH8, Lhd1, NF-YB11, OsNF-YB11, NFYB11, LH8, DTH8/Ghd8, RH8, DTH8/Ghd8/LHD1, CAR8, DTH8/Ghd8/ OsHAP3H, EF8, OsEF8,Ghd2, Ghd7, OsGhd7, OsCCT26, OsCMF8, OsI, Ghd7/Hd4, Hd4, EH7-1/Hd4, Ghd7-0a, EH7-1, EH7/Ghd7, EH7, OsEH7, GLW7.1, OsGLW7.1,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, OsHd1,  Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,Hd2(t), Hd2, qHD2(t), OsPRR37, Os-PRR37, PRR37, Prr4, OsPRR4, DTH7, Os DTH7, OsCCT28, CCT28, Ghd7.1, PRR37/Hd2, EH7-2, EH7-2/Hd2, Hd2/PRR37, PRR37-1a, PRR37-1b, PRR37-1c, PRR37-2a, PRR37- 2, HD7.2
48477	32268449	Pappas D., Gkelis S., Panteris E.	The effects of microcystin-LR in Oryza sativa root cells: F-actin as a new target of cyanobacterial toxicity.	Plant Biol (Stuttg)			2020		
48478	32277136	Ling F., Su Q., Jiang H., Cui J., He X., Wu Z., Zhang Z., Liu J., Zhao Y.	Effects of strigolactone on photosynthetic and physiological characteristics in salt-stressed rice seedlings.	Sci Rep	10(1)	6183	2020		
48479	32540190	Kora A.J., Mounika J., Jagadeeshwar R.	Rice leaf extract synthesized silver nanoparticles: An in?vitro fungicidal evaluation against Rhizoctonia solani, the causative agent of sheath blight disease in rice.	Fungal Biol	124(7)	671-681	2020		
48480	32283600	Wang Q., Zhu Y., Zou X., Li F., Zhang J., Kang Z., Li X., Yin C., Lin Y.	Nitrogen Deficiency-Induced Decrease in Cytokinins Content Promotes Rice seminal root Growth by Promoting root meristem Cell Proliferation and Cell Elongation.	Cells	9(4)		2020		
48481	32215974	Tabassum R., Dosaka T., Ichida H., Morita R., Ding Y., Abe T., Katsube-Tanaka T.	FLOURY ENDOSPERM11-2 encodes plastid HSP70-2 involved with the temperature-dependent chalkiness of rice (Oryza sativa L.) grains.	Plant J.	103(2)	604-616	2020	FLO11,HSP70CP1	OsHsp70CP2, HSP70CP2, OsFLO11, OsFLO11-2, FLO11-2, cpHSP70-2, OsHsp70cp-2, Hsp70cp-2,OsHsp70CP1, cpHSP70-1, OsHsp70cp-1, Hsp70cp-1
48482	32350607	Zhang Y., Li J., Chen S., Ma X., Wei H., Chen C., Gao N., Zou Y., Kong D., Li T., Liu Z., Yu S., Luo L.	An APETALA2/ethylene responsive factor, OsEBP89 knockout enhances adaptation to direct-seeding on wet land and tolerance to drought stress in rice.	Mol. Genet. Genomics	295(4)	941-956	2020		
48483	32299283	Sato-Izawa K., Nakamura S.I., Matsumoto T.	Mutation of rice <i>bc1</i> gene affects internode elongation and induces delayed cell wall deposition in developing internodes.	Plant Signal Behav	15(5)	1749786	2020		
48484	32326196	Pal R., Mahajan G., Sardana V., Asthir B., Chauhan B.S.	Performance of Dry-Seeded Rice Genotypes under Varied Soil Moisture Regimes and Foliar-Applied Hormones.	Plants (Basel)	9(4)		2020		
48485	32281116	Takagi D., Miyagi A., Tazoe Y., Suganami M., Kawai-Yamada M., Ueda A., Suzuki Y., Noguchi K., Hirotsu N., Makino A.	Phosphorus toxicity disrupts Rubisco activation and reactive oxygen species defence systems by phytic acid accumulation in leaves.	Plant Cell Environ.			2020		
48486	32272882	Khahani B., Tavakol E., Shariati V., Fornara F.	Genome wide screening and comparative genome analysis for Meta-QTLs, ortho-MQTLs and candidate genes controlling yield and yield-related traits in rice.	BMC Genomics	21(1)	294	2020		
48487	32344582	Wang H., Ham T.H., Im D.E., Lar S.M., Jang S.G., Lee J., Mo Y., Jeung J.U., Kim S.T., Kwon S.W.	A New SNP in Rice Gene Encoding Pyruvate Phosphate Dikinase (PPDK) Associated with floury endosperm.	Genes (Basel)	11(4)		2020		
48488	32353678	Piacentini D., Ronzan M., Fattorini L., Della Rovere F., Massimi L., Altamura M.M., Falasca G.	Nitric oxide alleviates cadmium- but not arsenic-induced damages in rice roots.	Plant Physiol. Biochem.	151	729-742	2020		
48489	32540008	Vilas J.M., Corigliano M.G., Clemente M., Maiale S.J., Rodr?guez AA.	Close relationship between the state of the oxygen evolving complex and rice cold stress tolerance.	Plant Sci.	296	110488	2020		
48490	32313138	Chen J.H., Chen S.T., He N.Y., Wang Q.L., Zhao Y., Gao W., Guo F.Q.	Nuclear-encoded synthesis of the D1 subunit of photosystem II increases photosynthetic efficiency and crop yield.	Nat Plants	6(5)	570-580	2020		
48491	32162327	Atighi M.R., Verstraeten B., De Meyer T., Kyndt T.	Genome-wide DNA hypomethylation shapes nematode pattern-triggered immunity in plants.	New Phytol.	227(2)	545-558	2020		
48492	32278023	Rajkumar M.S., Shankar R., Garg R., Jain M.	Bisulphite sequencing reveals dynamic DNA methylation under desiccation and salinity stresses in rice cultivars.	Genomics	112(5)	3537-3548	2020		
48493	32345214	Tang Y., Wang J., Bao X., Wu Q., Yang T., Li H., Wang W., Zhang Y., Bai N., Guan Y., Dai J., Xie Y., Li S., Huo R., Cheng W.	Genome-wide analysis of Jatropha curcas MADS-box gene family and functional characterization of the JcMADS40 gene in transgenic rice.	BMC Genomics	21(1)	325	2020		
48494	32355043	Songsiriritthigul C., Narawongsanont R., Tantitadapitak C., Guan H.H., Chen C.J.	Structure-function study of AKR4C14, an aldo-keto reductase from Thai jasmine rice (Oryza sativa L. ssp. indica cv. KDML105).	Acta Crystallogr D Struct Biol	76(Pt 5)	472-483	2020		
48495	32387913	Khare T., Srivastava A.K., Suprasanna P., Kumar V.	Individual and additive stress impacts of Na+ and Cl~ on proline metabolism and nitrosative responses in rice.	Plant Physiol. Biochem.	152	44-52	2020		
48496	32348929	Kimbembe R.E.R., Li G., Fu G., Feng B., Fu W., Tao L., Chen T.	Proteomic analysis of salicylic acid regulation of grain filling of two near-isogenic rice (Oryza sativa L.) varieties under soil drying condition.	Plant Physiol. Biochem.	151	659-672	2020		
48497	32329163	Khan M.A., Asaf S., Khan A.L., Adhikari A., Jan R., Ali S., Imran M., Kim K.M., Lee I.J.	Plant growth-promoting endophytic bacteria augment growth and salinity tolerance in rice plants.	Plant Biol (Stuttg)			2020		
48498	32316646	Spanu A., Langasco I., Valente M., Deroma M.A., Spano N., Barracu F., Pilo M.I., Sanna G.	Tuning of the Amount of Se in Rice (<i>Oryza sativa</i>) Grain by Varying the Nature of the Irrigation Method: Development of an ICP-MS Analytical Protocol, Validation and Application to 26 Different Rice Genotypes.	Molecules	25(8)		2020		
48499	32341004	Tan L., Qu M., Zhu Y., Peng C., Wang J., Gao D., Chen C.	ZINC TRANSPORTER5 and ZINC TRANSPORTER9 Function Synergistically in Zinc/Cadmium Uptake.	Plant Physiol.	183(3)	1235-1249	2020		
48500	32339389	Huang L., Li Q., Zhang C., Chu R., Gu Z., Tan H., Zhao D., Fan X., Liu Q.	Creating novel Wx alleles with fine-tuned amylose levels and improved grain quality in rice by promoter editing using CRISPR/Cas9 system.	Plant Biotechnol. J.			2020		
48501	32289636	Weng L., Zhang M., Wang K., Chen G., Ding M., Yuan W., Zhu Y., Xu W., Xu F.	Potassium alleviates ammonium toxicity in rice by reducing its uptake through activation of plasma membrane H+-ATPase to enhance proton extrusion.	Plant Physiol. Biochem.	151	429-437	2020		
48502	32377045	Adamski J.M., Rosa L.M.G., Menezes Peixoto CR., Pinheiro C.L., Fett J.P., Sperotto R.A.	Photosynthetic activity of <i>indica</i> rice sister lines with contrasting cold tolerance.	Physiol Mol Biol Plants	26(5)	955-964	2020		
48503	32305804	Zhu Y., Wu Q., Lv H., Chen W., Wang L., Shi S., Yang J., Zhao P., Li Y., Christopher R., Liu H., Feng R.	Toxicity of different forms of antimony to rice plants: Effects on reactive oxidative species production, antioxidative systems, and uptake of essential elements.	Environ. Pollut.	263(Pt B)	114544	2020		
48504	32714051	Yang J., Li D., Liu H., Liu Y., Huang M., Wang H., Chen Z., Guo T.	Identification of QTLs involved in cold tolerance during the germination and bud stages of rice (<i>Oryza sativa</i> L.) via a high-density genetic map.	Breed. Sci.	70(3)	292-302	2020		
48505	32281486	Kusajima M., Fujita M., Yamakawa H., Ushiwatari T., Mori T., Tsukamoto K., Hayashi H., Maruyama-Nakashita A., Che F.S., Nakashita H.	Characterization of plant immunity-activating mechanism by a pyrazole derivative.	Biosci. Biotechnol. Biochem.	84(7)	1427-1435	2020		
48506	32303966	Li X., Chen Z., Zhang G., Lu H., Qin P., Qi M., Yu Y., Jiao B., Zhao X., Gao Q., Wang H., Wu Y., Ma J., Zhang L., Wang Y., Deng L., Yao S., Cheng Z., Yu D., Zhu L., Xue Y., Chu C., Li A., Li S., Liang C.	Analysis of genetic architecture and favorable allele usage of agronomic traits in a large collection of Chinese rice accessions.	Sci China Life Sci			2020		
48507	32283262	Sohag A.A.M., Tahjib-Ul-Arif M., Afrin S., Khan M.K., Hannan M.A., Skalicky M., Mortuza M.G., Brestic M., Hossain M.A., Murata Y.	Insights into nitric oxide-mediated water balance, antioxidant defence and mineral homeostasis in rice (Oryza sativa L.) under chilling stress.	Nitric Oxide	100-101	7-16	2020		
48508	32299830	Guo T., Mu Q., Wang J., Vanous A.E., Onogi A., Iwata H., Li X., Yu J.	Dynamic effects of interacting genes underlying rice flowering-time phenotypic plasticity and global adaptation.	Genome Res.	30(5)	673-683	2020		
48509	32285954	Xiang Y., Jim?nez-G?mez JM.	SlHAK20: a new player in plant salt tolerance.	EMBO J.	39(10)	e104997	2020		
48510	32264840	Yang S., Hao D., Jin M., Li Y., Liu Z., Huang Y., Chen T., Su Y.	Internal ammonium excess induces ROS-mediated reactions and causes carbon scarcity in rice.	BMC Plant Biol.	20(1)	143	2020		
48511	32327548	Reis R.S., Deforges J., Sokoloff T., Poirier Y.	Modulation of Shoot Phosphate Level and Growth by <i>PHOSPHATE1</i> Upstream Open Reading Frame.	Plant Physiol.	183(3)	1145-1156	2020		
48512	32253515	de Oliveira BHN., Wairich A., Turchetto-Zolet AC., Fett J.P., Ricachenevsky F.K.	The Mitochondrial Iron-Regulated (MIR) gene is Oryza genus specific and evolved before speciation within the Oryza sativa complex.	Planta	251(5)	94	2020		
48513	32353606	Hu Y., Lai Y., Chen X., Zhou D.X., Zhao Y.	Distribution pattern of histone marks potentially determines their roles in transcription and RNA processing in rice.	J. Plant Physiol.	249	153167	2020		
48514	32238442	Hsiao A.S., Wang K., Ho T.D.	An Intrinsically Disordered Protein Interacts with the Cytoskeleton for Adaptive Root Growth under Stress.	Plant Physiol.	183(2)	570-587	2020		
48515	32238902	Li X., Wang P., Li J., Wei S., Yan Y., Yang J., Zhao M., Langdale J.A., Zhou W.	Maize GOLDEN2-LIKE genes enhance biomass and grain yields in rice by improving photosynthesis and reducing photoinhibition.	Commun Biol	3(1)	151	2020		
48516	32253333	Zhang W.	A GDSL Lipase Is Required for Anther and Pollen Development.	Plant Physiol.	182(4)	1810-1811	2020		
48517	32673581	Gong B.Q., Wang F.Z., Li J.F.	Hide-and-Seek: Chitin-Triggered Plant Immunity and Fungal Counterstrategies.	Trends Plant Sci.	25(8)	805-816	2020		
48518	32355217	Choi J., Lee T., Cho J., Servante E.K., Pucker B., Summers W., Bowden S., Rahimi M., An K., An G., Bouwmeester H.J., Wallington E.J., Oldroyd G., Paszkowski U.	The negative regulator SMAX1 controls mycorrhizal symbiosis and strigolactone biosynthesis in rice.	Nat Commun	11(1)	2114	2020	LYK5,D17,SMAX1,D27,DLK2A,D10,LYK1,NSP2,SLB1,D3,DMI3,KIN6,DXS3,SYMRK,KAI2,IPD3	OsLysM-RLK2, LysM-RLK2, OsLYK5, OsNFR5, NFR5, OsMYR1/OsLYK2, OsMYR1, OsLYK2, MYR1, LYK2, NFR5/MYR1,d17(t), dwf14, d17, htd1, OsCCD7, CCD7, D17/HTD1, HTD1, OsHTD1, OsD17,OsSMAX1,d27(d t), dt, dwf23, d27, OsD27,DLK2a, OsDLK2a,d10(d15,d16), d16, d15, dwf9, d10, OsCCD8b, OsCCD8, CCD8, OsD10,OsLysM-RLK3, LysM-RLK3, OsLYK,Os NSP2, OsNSP2, OsGRAS-13, OsGRAS13, GRAS-13, GRAS13, OsGRAS12, GRAS12,OsSLB1, Os900/CYP711A2, Os900, CYP711A2, OsCYP711A2, OsCO, CO,d3, dwf3, D3/OsMAX2, Os_F0760, SOL1, OsORE9, ORE9, MAX2, OsRFPH2-10, RFPH2-10, OsD3,  OsFBL27, FBL27,OsDMI3, OsCCaMK1, OsCCaMK, OsCCAMK, CCAMK,OsKIN6, OsARK2, ARK2,OsDXS, OsDXS3, dxs3, DXS2, OsDXS2,OsSYMRK,D14L, OsD14L, OsKAI2,OsIPD3, Osipd3, CYCLOPS, IPD3/CYCLOPS, OsCYCLOPS
48519	32509751	Zhao N., Sheng M., Zhao J., Ma X., Wei Q., Song Q., Zhang K., Xu W., Sun C., Liu F., Su Z.	Over-Expression of <i>HDA710</i> Delays leaf senescence in Rice (<i>Oryza sativa</i> L.).	Front Bioeng Biotechnol	8	471	2020		
48520	32403344	Yamauchi T., Tanaka A., Tsutsumi N., Inukai Y., Nakazono M.	A Role for Auxin in Ethylene-Dependent Inducible Aerenchyma Formation in Rice Roots.	Plants (Basel)	9(5)		2020		
48521	32485961	Ngernmuen A., Suktrakul W., Kate-Ngam S., Jantasuriyarat C.	Transcriptome Comparison of Defense Responses in the Rice Variety 'Jao Hom Nin' Regarding Two Blast Resistant Genes, <i>Pish</i> and <i>Pik</i>.	Plants (Basel)	9(6)		2020		
48522	32394633	Zhu Z., Yin J., Chern M., Zhu X., Yang C., He K., Liu Y., He M., Wang J., Song L., Wang L., Wei Y., Wang J., Liu J., Qing H., Bi Y., Li M., Hu K., Qi T., Hou Q., Chen X., Li W.	New insights into BSR-D1-mediated broad-spectrum resistance to rice blast.	Mol. Plant Pathol.	21(7)	951-960	2020		
48523	32714049	Fujino K.	Days to heading, controlled by the heading date genes, <i>Hd1</i> and <i>DTH8</i>, limits rice yield-related traits in Hokkaido, Japan.	Breed. Sci.	70(3)	277-282	2020		
48524	32548495	Moritani C., Kawakami K., Shimoda H., Hatanaka T., Suzaki E., Tsuboi S.	Protective Effects of Rice Peptide Oryza Peptide-P60 against Oxidative Injury through Activation of Nrf2 Signaling Pathway <i>In Vitro</i> and <i>In Vivo</i>.	ACS Omega	5(22)	13096-13107	2020		
48525	32451398	Singh A., Singh Y., Mahato A.K., Jayaswal P.K., Singh S., Singh R., Yadav N., Singh A.K., Singh P.K., Singh R., Kumar R., Septiningsih E.M., Balyan H.S., Singh N.K., Rai V.	Allelic sequence variation in the Sub1A, Sub1B and Sub1C genes among diverse rice cultivars and its association with submergence tolerance.	Sci Rep	10(1)	8621	2020		
48526	32415911	Zhang C., Fang H., Shi X., He F., Wang R., Fan J., Bai P., Wang J., Park C.H., Bellizzi M., Zhou X., Wang G.L., Ning Y.	A fungal effector and a rice NLR protein have antagonistic effects on a Bowman-Birk trypsin inhibitor.	Plant Biotechnol. J.			2020	PIZT,RBBI3-1	Piz-t, Pi-zt, Pi-z(t), Pi2/Pizt, Pizt, Pi9, OsPiz-t,RBBI3-1, OsBBTI4, BBTI4, IBP1.1, RBBTI4, APIP4, OsAPIP4
48527	32423169	Xu P., Yang J., Ma Z., Yu D., Zhou J., Tao D., Li Z.	Identification and Validation of Aerobic Adaptation QTLs in Upland Rice.	Life (Basel)	10(5)		2020		
48528	32418333	Sun Z., Shi J.H., Fan T., Wang C., Liu L., Jin H., Foba C.N., Wang M.Q.	The control of the brown planthopper by the rice Bph14 gene is affected by nitrogen.	Pest Manag. Sci.			2020		
48529	32472264	Li Q., Lu L., Liu H., Bai X., Zhou X., Wu B., Yuan M., Yang L., Xing Y.	A minor QTL, SG3, encoding an R2R3-MYB protein, negatively controls grain length in rice.	Theor. Appl. Genet.	133(8)	2387-2399	2020		
48530	32684419	Biswas S., Tian J., Li R., Chen X., Luo Z., Chen M., Zhao X., Zhang D., Persson S., Yuan Z., Shi J.	Investigation of CRISPR/Cas9-induced SD1 rice mutants highlights the importance of molecular characterization in plant molecular breeding.	J Genet Genomics			2020		
48531	32464682	Li H., Liu Y., Qin H., Lin X., Tang D., Wu Z., Luo W., Shen Y., Dong F., Wang Y., Feng T., Wang L., Li L., Chen D., Zhang Y., Murray J.D., Chao D., Chong K., Cheng Z., Meng Z.	A rice chloroplast-localized ABC transporter arg1 modulates cobalt and nickel homeostasis and contributes to photosynthetic capacity.	New Phytol.			2020	PETC,TSC1,LFNR1,ABCI6,ARG1 	PetC, OsPETC,ABCI7, OsABCI7, OsABCI7_1, OsABCI7_2, OsABCI8, ABCI8, OsABCI8.1, OsABCI8.2, OsCNL1, CNL1, OsTSC1, TSC1.1, TSC1.2,OsLFNR1, LFNR2, Os-LFNR2, OsLFNR2, FNR, PetH-2,OsABCI6, OsABCI7, ABCI7,ABCI8, OsABCI8, OsABCI9, ABCI9, OsARG1 
48532	32508849	Yoneyama K., Xie X., Nomura T., Yoneyama K.	Do Phosphate and Cytokinin Interact to Regulate Strigolactone Biosynthesis or Act Independently?	Front Plant Sci	11	438	2020		
48533	32477382	Rai H., Kawabata M.	The Dynamics of Radio-Cesium in Soils and Mechanism of Cesium Uptake Into Higher Plants: Newly Elucidated Mechanism of Cesium Uptake Into Rice Plants.	Front Plant Sci	11	528	2020		
48534	32415213	Quais M.K., Munawar A., Ansari N.A., Zhou W.W., Zhu Z.R.	Interactions between brown planthopper (Nilaparvata lugens) and salinity stressed rice (Oryza sativa) plant are cultivar-specific.	Sci Rep	10(1)	8051	2020		
48535	32385288	Roy S.C., Shil P.	Assessment of Genetic Heritability in Rice Breeding Lines Based on Morphological Traits and Caryopsis Ultrastructure.	Sci Rep	10(1)	7830	2020		
48536	32388591	Mousavi S.R., Niknejad Y., Fallah H., Tari D.B.	Methyl jasmonate alleviates arsenic toxicity in rice.	Plant Cell Rep.	39(8)	1041-1060	2020		
48537	32398676	Golicz A.A., Bhalla P.L., Edwards D., Singh M.B.	Rice 3D chromatin structure correlates with sequence variation and meiotic recombination rate.	Commun Biol	3(1)	235	2020		
48538	32372479	Hua K., Jiang Y., Tao X., Zhu J.K.	Precision genome engineering in rice using prime editing system.	Plant Biotechnol. J.			2020		
48539	32432983	Tian D., Lin Y., Chen Z., Chen Z., Yang F., Wang F., Wang Z., Wang M.	Exploring the Distribution of Blast Resistance Alleles at the <i>Pi2/9</i> Locus in Major Rice-Producing Areas of China by a Novel Indel Marker.	Plant Dis.	104(7)	1932-1938	2020		
48540	32472177	Nakamura Y., Ono M., Suto M., Kawashima H.	Analysis of malto-oligosaccharides and related metabolites in rice endosperm during development.	Planta	251(6)	110	2020		
48541	32473221	Yang Y., Lin G., Yu X., Wu Y., Xiong F.	Rice starch accumulation at different endosperm regions and physical properties under nitrogen treatment at panicle initiation stage.	Int. J. Biol. Macromol.	160	328-339	2020		
48542	32415291	Gutaker R.M., Groen S.C., Bellis E.S., Choi J.Y., Pires I.S., Bocinsky R.K., Slayton E.R., Wilkins O., Castillo C.C., Negr?o S., Oliveira M.M., Fuller D.Q., Guedes J.A.D., Lasky J.R., Purugganan M.D.	Genomic history and ecology of the geographic spread of rice.	Nat Plants	6(5)	492-502	2020		
48543	32101292	Tanaka N., Shenton M., Kawahara Y., Kumagai M., Sakai H., Kanamori H., Yonemaru J., Fukuoka S., Sugimoto K., Ishimoto M., Wu J., Ebana K.	Whole-Genome Sequencing of the NARO World Rice Core Collection (WRC) as the Basis for Diversity and Association Studies.	Plant Cell Physiol.	61(5)	922-932	2020		
48544	32403343	Ahmad M.S., Wu B., Wang H., Kang D.	Field Screening of Rice Germplasm (<i>Oryza sativa</i> L. ssp. <i>japonica</i>) Based on Days to Flowering for Drought Escape.	Plants (Basel)	9(5)		2020		
48545	32443496	Seo J., Lee S.M., Han J.H., Shin N.H., Lee Y.K., Kim B., Chin J.H., Koh H.J.	Characterization of the Common <i>Japonica</i>-Originated Genomic Regions in the High-Yielding Varieties Developed from Inter-Subspecific Crosses in Temperate Rice (<i>Oryza sativa</i> L.).	Genes (Basel)	11(5)		2020		
48546	32391618	Ren L., Zhao T., Zhang L., Du G., Shen Y., Tang D., Li Y., Luo Q., Cheng Z.	Defective Microspore Development?1 is required for microspore cell integrity and pollen wall formation in rice.	Plant J.			2020	SWEET5,G4,RAB8A2,STP25,AHA1,_,GONST1,TDR,DMD1,ALMT9	OsSWEET5,OsG4, BG4, OsBG4,OsRab8A2,OsSTP14, STP14, OsSTP25,OSA1, OsA1, osAHA1, AHA1,,OsGONST1,tdr, OsbHLH005, bHLH005, OsbHLH5, bhlh5, TDR1, OsTDR, OsTDR1, OsMYC5, MYC5,OsDMD1,OsALMT9, OsALMT2
48547	32528484	Vicient C.M., Casacuberta J.M.	Additional ORFs in Plant LTR-Retrotransposons.	Front Plant Sci	11	555	2020		
48548	32107545	Wu T.Y., Krishnamoorthi S., Goh H., Leong R., Sanson A.C., Urano D.	Crosstalk between heterotrimeric G protein-coupled signaling pathways and WRKY transcription factors modulating plant responses to suboptimal micronutrient conditions.	J. Exp. Bot.	71(10)	3227-3239	2020		
48549	32714052	Taddesse L., Fukuta Y., Ishikawa R.	Genetic study of diversity and blast resistance in Ethiopian rice cultivars adapted to different ecosystems.	Breed. Sci.	70(3)	303-312	2020		
48550	32421869	Auler P.A., Nogueira do Amaral M., Rossatto T., Lopez Crizel R., Milech C., Clasen Chaves F., Maia Souza G., Bolacel Braga EJ.	Metabolism of abscisic acid in two contrasting rice genotypes submitted to recurrent water deficit.	Physiol Plant			2020		
48551	32536934	Zhou C., Lin Q., Lan J., Zhang T., Liu X., Miao R., Mou C., Nguyen T., Wang J., Zhang X., Zhou L., Zhu X., Wang Q., Zhang X., Guo X., Liu S., Jiang L., Wan J.	WRKY Transcription Factor <i>OsWRKY29</i> Represses seed dormancy in Rice by Weakening Abscisic Acid Response.	Front Plant Sci	11	691	2020		
48552	32424525	Silva J., Sukweenadhi J., Myagmarjav D., Mohanan P., Yu J., Shi J., Jung K.H., Zhang D., Yang D.C., Kim Y.J.	Overexpression of a novel cytochrome P450 monooxygenase gene, CYP704B1, from Panax ginseng increase biomass of reproductive tissues in transgenic Arabidopsis.	Mol. Biol. Rep.	47(6)	4507-4518	2020		
48553	32061090	Yuan C., Li H., Qin C., Zhang X., Chen Q., Zhang P., Xu X., He M., Zhang X., T?r M., Xue D., Wang H., Jackson S., He Y., Liu Y., Shi N., Hong Y.	Foxtail mosaic virus-induced flowering assays in monocot crops.	J. Exp. Bot.	71(10)	3012-3023	2020		
48554	32458058	Hu W., Zhou T., Han Z., Tan C., Xing Y.	Dominant complementary interaction between OsC1 and two tightly linked genes, Rb1 and Rb2, controls the purple leaf sheath in rice.	Theor. Appl. Genet.			2020	_,PSH1	OsbHLH012, bHLH012, bHLH12, OsRb, Rb, Rb1, OsRb1,Rb, Rb*, bhlh165, OsbHLH165, Rb2, OsPSH1, OsRb2
48555	32549691	Adjah K.L., Abe A., Adetimirin V.O., Asante M.D.	Genetic variability, heritability and correlations for milling and grain appearance qualities in some accessions of rice (<i>Oryza sativa</i> L.).	Physiol Mol Biol Plants	26(6)	1309-1317	2020		
48556	32375632	Yang X., Xia X., Zeng Y., Nong B., Zhang Z., Wu Y., Tian Q., Zeng W., Gao J., Zhou W., Liang H., Li D., Deng G.	Genome-wide identification of the peptide transporter family in rice and analysis of the PTR expression modulation in two near-isogenic lines with different nitrogen use efficiency.	BMC Plant Biol.	20(1)	193	2020	PTR5,_,_,NPF3.1,_,_,_,_,_,_,_,NPF4.5,PTR2,_,_,_,_,_,NPF5.16,_,_,_,_,_,_,_,_,PTR1,_,NPF6.5,NRT1.5A,NRT1.4,NPF6.1,NPF6.3,_,NPF2.4,_,NRT1.5B,_,NPF2.3,_,_,_,_,NPF7.2,_,_,_,NRT1.7,_,_,_,_,_,_,RBLS5,_,_,_,_,PTR8,NRT1.2,_,NRT1.3B,_,_,_,_,_,_,_,PTR6,PTR9,SP1,NRT1.1C,NRT1,_,_,_,_,_,_,_,_,_,_,_,NPF8.17,_,_,PTR4,PTR7,_,_,NPF7.6,_	OsPTR5, OsNPF7.4, NPF7.4 ,PTR,PTR,PTR, OsNPF3.1,PTR,PTR,PTR,PTR,PTR,POT,,PTR, OsNPF4.5,OsPTR2, OsNPF2.2, NPF2.2,PTR,PTR,OsPOT, POT, OsIROPT1, IROPT1,PTR,PTR,PTR, OsNPF5.16,PTR,PTR, NPF8.1, OsNPF8.1,PTR, NPF8.1, OsNPF8.1,PTR,PTR,PTR,PTR,PTR,OsPTR1, OsNPF8.2, NPF8.2 ,PTR,OsNRT1.1B, NRT1.1B, OsNPF6.5,OsNRT1.5A,OsNRT1.4,OsNPF6.1,OsNRT1.1A, NRT1.1A, OsNRT1.1A/ OsNPF6.3, OsNPF6.3,PTR,OsNPF2.4, OsPTR2, PTR2,PTR,OsNRT1.5B,PTR,PTR, OsNPF2.3,PTR,PTR,PTR,PTR,OsNPF7.2,PTR,PTR,PTR,OsNRT1.7,PTR,PTR,PTR,PTR,PTR,PTR,PTR3, OsPTR3, PTR3-A, OsPTR3-A, OsNPF5.5, NPF5.5, OsRBLS5,OsPTR10, PTR10, OsNPF7.7, NPF7.7, OsNPF7.7-1, OsNPF7.7-2,PTR,PTR,OsPTR3, PTR3, PTR3-A,OsPTR8, OsNPF8.5, NPF8.5 ,OsNRT1.2,PTR,OsNRT1.3B,PTR,PTR,PTR,PTR,PTR,PTR,PTR,OsPTR6, OsNRT1;2, NRT1;2, OsNPF7.3, NPF7.3 ,OsPTR9, OsNPF8.20, NPF8.20  ,sp, SP, OsNPF4.1, NPF4.1, OsSP1,OsNRT1.1C, OsNPF6.4, NPF6.4,OsNRT1, OsNRT1;1, OsNRT1.1, OsNRT1.1a, OsNRT1.1b, NRT1.1, NRT1.1a, NRT1.1b, OsNPF8.9, NPF8.9 , OsNRT1.1B,PTR,PTR,PTR,PTR,PTR,PTR,PTR,PTR,PTR,PTR,PTR,PTR, OsNPF8.17,PTR, OsNPF3.1, NPF3.1,PTR,OsPTR4, OsNPF7.1, NPF7.1 ,OsPTR7, OsNPF8.1, NPF8.1, OsNPF8.10, NPF8.10,PTR,PTR,PTR, OsNPF7.6,PTR
48557	32429875	Pidon H., Ch?ron S., Ghesqui?re A., Albar L.	Allele mining unlocks the identification of RYMV resistance genes and alleles in African cultivated rice.	BMC Plant Biol.	20(1)	222	2020	RYMV3,RYMV2,RYMV1	OsRYMV3,OsCPR5-1, CPR5-1, OsRYMV2, OsCPR5.1, CPR5.1,Rymv1, eIF(iso)4G, OsRYMV1, OseIF(iso)4G, eIFiso4G
48558	32563458	Dastan S., Ghareyazie B., Teixeira da Silva JA.	Selection of ideotype to increase yield potential of GM and non-GM rice cultivars.	Plant Sci.	297	110519	2020		
48559	32468258	Leelagud P., Kongsila S., Vejchasarn P., Darwell K., Phansenee Y., Suthanthangjai A., Uparang C., Kawichai R., Yajai P., Boonsa-Nga K., Chamarerk V., Jairin J.	Genetic diversity of Asian rice gall midge based on mtCOI gene sequences and identification of a novel resistance locus gm12 in rice cultivar MN62M.	Mol. Biol. Rep.	47(6)	4273-4283	2020		
48560	32385410	Balakrishnan D., Surapaneni M., Yadavalli V.R., Addanki K.R., Mesapogu S., Beerelli K., Neelamraju S.	Detecting CSSLs and yield QTLs with additive, epistatic and QTL~environment interaction effects from Oryza sativa ~ O. nivara IRGC81832 cross.	Sci Rep	10(1)	7766	2020		
48561	32563456	Sriskantharajah K., Osumi S., Chuamnakthong S., Nampei M., Amas J.C., Gregorio G.B., Ueda A.	Contribution of two different Na+ transport systems to acquired salinity tolerance in rice.	Plant Sci.	297	110517	2020		
48562	32472217	Dixit S., Singh U.M., Singh A.K., Alam S., Venkateshwarlu C., Nachimuthu V.V., Yadav S., Abbai R., Selvaraj R., Devi M.N., Ramayya P.J., Badri J., Ram T., Lakshmi J., Lakshmidevi G., Lrk J.V., Padmakumari A.P., Laha G.S., Prasad M.S., Seetalam M., Singh V.K., Kumar A.	Marker Assisted Forward Breeding to Combine Multiple Biotic-Abiotic Stress Resistance/Tolerance in Rice.	Rice (N Y)	13(1)	29	2020		
48563	32439720	Lu Y., Tan F., Zhao Y., Zhou S., Chen X., Hu Y., Zhou D.X.	A Chromodomain-Helicase-DNA-Binding Factor Functions in Chromatin Modification and Gene Regulation.	Plant Physiol.	183(3)	1035-1046	2020		
48564	32464438	Kumar A., Dubey A.K., Kumar V., Ansari M.A., Narayan S., Meenakshi, Kumar S., Pandey V., Shirke P.A., Pande V., Sanyal I.	Overexpression of rice glutaredoxin genes LOC_Os02g40500 and LOC_Os01g27140 regulate plant responses to drought stress.	Ecotoxicol. Environ. Saf.	200	110721	2020		
48565	32371522	Huang S., Sasaki A., Yamaji N., Okada H., Mitani-Ueno N., Ma J.F.	The ZIP Transporter Family Member OsZIP9 Contributes To Root Zinc Uptake in Rice under Zinc-Limited Conditions.	Plant Physiol.	183(3)	1224-1234	2020		
48566	32549686	Whankaew S., Kaewmanee S., Ruttajorn K., Phongdara A.	Indel marker analysis of putative stress-related genes reveals genetic diversity and differentiation of rice landraces in peninsular Thailand.	Physiol Mol Biol Plants	26(6)	1237-1247	2020	CCH,PRL5,GL1-2,PLT8,PTF1	OsATX1, OsCCH, OsaCCH, ATX1, OsHMP14, HMP14,OsGA20ox4, ga20ox4, GA20ox2, Prl5, Prl5/GA20ox4, OsPrl5,OsGL1-2, WAX2, OsWAX2,OsPLT8, CRL5, OsCRL5, AP2/EREBP141, AP2/EREBP#141 ,OsPTF1, OsbHLH096, bHLH96
48567	32380960	Wang R., Qian J., Fang Z., Tang J.	Transcriptomic and physiological analyses of rice seedlings under different nitrogen supplies provide insight into the regulation involved in axillary bud outgrowth.	BMC Plant Biol.	20(1)	197	2020		
48568	32528496	Sheng X., Sun Z., Wang X., Tan Y., Yu D., Yuan G., Yuan D., Duan M.	Improvement of the Rice "Easy-to-Shatter" Trait via CRISPR/Cas9-Mediated Mutagenesis of the <i>qSH1</i> Gene.	Front Plant Sci	11	619	2020		
48569	32456239	Allimuthu E., Dalal M., Kumar K.G., Sellathdurai D., Kumar R.R., Sathee L., Chinnusamy V.	Characterization of Atypical Protein Tyrosine Kinase (PTK) Genes and Their Role in Abiotic Stress Response in Rice.	Plants (Basel)	9(5)		2020	RLCK110,BSR1,RLCK255,RLCK241,RLCK272,RLCK200,RLCK245,PTK10,RLCK203,RLCK232,RLCK86,RLCK160,RLCK101,RLCK284,BBS1,RLCK300,RLCK298	OsRLCK110, PTK5, OsPTK5,OsRLCK278, RLCK278, PTK15, OsPTK15,OsRLCK255, PTK13, OsPTK13,OsRLCK241, PTK11, OsPTK11,OsRLCK272, PTK14, OsPTK14,OsRLCK200, PTK7, OsPTK7,OsRLCK245, PTK12, OsPTK12,OsPTK10,OsRLCK203, PTK8, OsPTK8,OsRLCK232, PTK9, OsPTK9,OsRLCK86, PTK2, OsPTK2,OsRLCK160, PTK6, OsPTK6,OsRLCK101, PTK3, OsPTK3,OsRLCK284, YK12, PTK16, OsPTK16, STK, OsSTK,OsRLCK109, RLCK109, OsBBS1, OSBBS1/OsRLCK109, PTK4, PTK4/BBS1, OsPTK4,OsRLCK300, PTK18, OsPTK18,OsRLCK298, PTK17, OsPTK17
48570	32454360	Park S., Yu G.H., Bae M.S.	Effects of combustion condition and biomass type on the light absorption of fine organic aerosols from fresh biomass burning emissions over Korea.	Environ. Pollut.	265(Pt B)	114841	2020		
48571	32457405	Dong N.Q., Sun Y., Guo T., Shi C.L., Zhang Y.M., Kan Y., Xiang Y.H., Zhang H., Yang Y.B., Li Y.C., Zhao H.Y., Yu H.X., Lu Z.Q., Wang Y., Ye W.W., Shan J.X., Lin H.X.	UDP-glucosyltransferase regulates grain size and abiotic stress tolerance associated with metabolic flux redirection in rice.	Nat Commun	11(1)	2629	2020	PAL1,TARL2,GSA1,FIB,CHS,CCR1,F3'H,_,ANS,CHI3,PIN1B,C4H2,TARL1,TAR1,ROMT9,C,FC1	OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6,OsTARL2,OsGSA1, UGT83A1, OsUGT83A1,fib, OsFIB, OsTAR2, TAR2, TSG1, OsTSG1, OsTAA1, TAA1,CHS*, Oschs, chs, chas, OsCHS, OsCHS1, CHS1, OsPKS26, PKS26, OsCHS24, CHS24, OsCHS27, CHS27,OsCCR1,OsF3'H, OsCYP75B3, CYP75B3, OsF3'H10, F3'H10, OsCYP71P3, CYP71P3,OsP1, P1,ANS, OsANS1, ANS1, LDOX, LDOX1, OsLDOX, OsLDOX1,gh1, GH1, OsGH1, OsCHI, Cfi, CHI, OsCHI3,PIN1A, OsPIN1A, OsPIN1a, REH1, OsPIN1, OsPIN1b, REH1/OsPIN1,OsC4H, OsC4HL, C4H, OsC4H2,OsTAA1, TAA1, OsTAA1;4, TAA1;4, OsTARL1, OsTAA1;3, TAA1;3,OsTAR1, FBL,COMT, OsCOMT, ROMT-9, OsCOMT1, OsCAldOMT1, CAldOMT1, OsOMT, OsCOMT15, COMT15,C, Cp, OsC1, Os-C1, C1, OsMyb6, Myb6, OsPL6, PL6, OsGL1E, GL1E, Os2R_MYB63, 2R_MYB63, OsC1PLSr, C1PLSr,OsCAD7, fc1, CAD7
48572	32367760	Singha D.L., Maharana J., Panda D., Dehury B., Modi M.K., Singh S.	Understanding the thermal response of rice eukaryotic transcription factor <i>eIF4A1</i> towards dynamic temperature stress: insights from expression profiling and molecular dynamics simulation.	J. Biomol. Struct. Dyn.		1-10	2020		
48573	32343414	Ueda Y., Ohtsuki N., Kadota K., Tezuka A., Nagano A.J., Kadowaki T., Kim Y., Miyao M., Yanagisawa S.	Gene regulatory network and its constituent transcription factors that control nitrogen-deficiency responses in rice.	New Phytol.	227(5)	1434-1452	2020		
48574	32449251	Yang M., Li Y., Liu Z., Tian J., Liang L., Qiu Y., Wang G., Du Q., Cheng D., Cai H., Shi L., Xu F., Lian X.	A high activity zinc transporter OsZIP9 mediates zinc uptake in rice.	Plant J.			2020		
48575	32472354	Rajatheja MKJC., Chandrajith R., Bentota A., Jayasinghe G.Y.	A Comparative Assessment of Trace Element Accumulation in Native and Improved Rice (Oryza sativa L.) Varieties Grown Under Different Conditions of Fertilizer Application.	Biol Trace Elem Res			2020		
48576	32461553	Zhao L., Xie L., Zhang Q., Ouyang W., Deng L., Guan P., Ma M., Li Y., Zhang Y., Xiao Q., Zhang J., Li H., Wang S., Man J., Cao Z., Zhang Q., Zhang Q., Li G., Li X.	Integrative analysis of reference epigenomes in 20 rice varieties.	Nat Commun	11(1)	2658	2020		
48577	32714057	Muto C., Tanaka K., Tabuchi H., Kurauchi N., Sato Y.I., Ishikawa R.	Genetic diversity of preserved rice seed samples from the Mikawa area, Japan, stored in the Meiji era.	Breed. Sci.	70(3)	347-354	2020		
48578	32450439	Liu H., Yang L., Li N., Zhou C., Feng H., Yang J., Han X.	Cadmium toxicity reduction in rice (Oryza sativa L.) through iron addition during primary reaction of photosynthesis.	Ecotoxicol. Environ. Saf.	200	110746	2020		
48579	32356123	Dastan S., Ghareyazie B., Abdollahi S.	Field trial evidence of non-transgenic and transgenic Bt. rice genotypes in north of Iran.	J Genet Eng Biotechnol	18(1)	12	2020		
48580	32547576	Long W., Dan D., Yuan Z., Chen Y., Jin J., Yang W., Zhang Z., Li N., Li S.	Deciphering the Genetic Basis of Lodging Resistance in Wild Rice <i>Oryza longistaminata</i>.	Front Plant Sci	11	628	2020		
48581	32477389	Ablazov A., Mi J., Jamil M., Jia K.P., Wang J.Y., Feng Q., Al-Babili S.	The Apocarotenoid Zaxinone Is a Positive Regulator of Strigolactone and Abscisic Acid Biosynthesis in Arabidopsis Roots.	Front Plant Sci	11	578	2020		
48582	32444695	Lin D., Kong R., Chen L., Wang Y., Wu L., Xu J., Piao Z., Lee G., Dong Y.	Chloroplast development at low temperature requires the pseudouridine synthase gene TCD3 in rice.	Sci Rep	10(1)	8518	2020	V3,TCD3,PSBA,RPOC1,YGL10,PSAA,CAB1R,FTSZ1,RBCL,_,_,YGL1	v3, RNRL1, rnrl1, RNR1, RNRL, Osv3, OsRNRL1, OsRNR1, OsRNRL,OsTCD3, OsPUS1, PUS1,PsbA, psbA, OsPsbA, PSBD1, OsPSBD1, psbD1,rpoC1, RPO beta', RPObeta', OsRPOC1,CAO, OsCAO, CAO1, OsCAO1, Oslls1, Lls1, DVR, PGL,PsaA, psaA, PsAA1, psaA1,cab1R, LHCP, CAB, OsLhcb1, Lhcb1, Cab1, OsCAB1, Lhcb1b, OsLhcb1b, CAB2R,FtsZ1, FtsZ, OsFtsZ1, OsFtsZ,rbcL, rbcA, OsrbcL,atpA,PolI-like, OsPoLP1, PoLP1, OsRpoLp, RpoLp,OsYGL1, CHLG, Ygl1, CS, OsCHLG
48583	32466257	Bhaskar Rao T., Chopperla R., Prathi N.B., Balakrishnan M., Prakasam V., Laha G.S., Balachandran S.M., Mangrauthia S.K.	A Comprehensive Gene Expression Profile of Pectin Degradation Enzymes Reveals the Molecular Events during Cell Wall Degradation and Pathogenesis of Rice Sheath Blight Pathogen <i>Rhizoctonia solani</i> AG1-IA.	J Fungi (Basel)	6(2)		2020		
48584	32405769	Biswas S., Li R., Hong J., Zhao X., Yuan Z., Zhang D., Shi J.	Effective identification of CRISPR/Cas9-induced and naturally occurred mutations in rice using a multiplex ligation-dependent probe amplification-based method.	Theor. Appl. Genet.	133(8)	2323-2334	2020		
48585	32549680	El-Katony TM., Deyab M.A., El-Adl MF., Ward F.M.E.	The aqueous extract and powder of the brown alga <i>Dictyota dichotoma</i> (Hudson) differentially alleviate the impact of abiotic stress on rice (<i>Oryza sativa</i> L.).	Physiol Mol Biol Plants	26(6)	1155-1171	2020		
48586	32474838	do Amaral MN., Arge L.W.P., Auler P.A., Rossatto T., Milech C., Magalh?es AM., Braga E.J.B.	Long-term transcriptional memory in rice plants submitted to salt shock.	Planta	251(6)	111	2020		
48587	32415853	Rashid F.A.A., Scafaro A.P., Asao S., Fenske R., Dewar R.C., Masle J., Taylor N.L., Atkin O.K.	Diel- and temperature-driven variation of leaf dark respiration rates and metabolite levels in rice.	New Phytol.			2020		
48588	32434071	Wan X., Wu S., Li Z., An X., Tian Y.	Lipid Metabolism: Critical Roles in Male Fertility and Other Aspects of Reproductive Development in Plants.	Mol Plant	13(7)	955-983	2020		
48589	32175828	Sruthilaxmi C.B., Babu S.	Proteome Responses to Individual Pathogens and Abiotic Conditions in Rice Seedlings.	Phytopathology	110(7)	1326-1341	2020		
48590	32458040	Cheon K.S., Won Y.J., Jeong Y.M., Lee Y.Y., Kang D.Y., Oh J., Oh H., Kim S.L., Kim N., Lee E., Yoon I.S., Choi I., Baek J., Kim K.H., Park H.S., Ji H.	QTL mapping for pre-harvest sprouting resistance in japonica rice varieties utilizing genome re-sequencing.	Mol. Genet. Genomics	295(5)	1129-1140	2020		
48591	32440809	Mukherjee T., Banik A., Mukhopadhyay S.K.	Plant Growth-Promoting Traits of a Thermophilic Strain of the Klebsiella Group with its Effect on Rice Plant Growth.	Curr. Microbiol.			2020		
48592	32184372	Tanaka T., Nishijima R., Teramoto S., Kitomi Y., Hayashi T., Uga Y., Kawakatsu T.	<i>De novo</i> Genome Assembly of the <i>indica</i> Rice Variety IR64 Using Linked-Read Sequencing and Nanopore Sequencing.	G3 (Bethesda)	10(5)	1495-1501	2020		
48593	32357119	Chen X., Laborda P., Liu F.	Exogenous Melatonin Enhances Rice Plant Resistance Against <i>Xanthomonas oryzae</i> pv. <i>oryzae</i>.	Plant Dis.	104(6)	1701-1708	2020		
48594	32053723	Zhang Y., Du H., Gui Y., Xu F., Liu J., Zhang J., Xu W.	Moderate water stress in rice induces rhizosheath formation associated with abscisic acid and auxin responses.	J. Exp. Bot.	71(9)	2740-2751	2020	IAA8,RAB16A,IAA25,PYL/RCAR6,ARF13,EXPA17,ABA8OX2,CAS,ARF10,RAU3,PIN5C,RHD3,PIN5B,SAUR27,RAB16D,EM,SAUR39,ARF24,SAPK9,LRA1,IAA22,ETT2,RHL1,SAUR9,RAB16C,PYL/RCAR4,DHN6,RAB16B,SAPK1,GH3-4,PYL/RCAR13,JAR3	OsIAA8,Rab16A, rab21, RAB21, OsRab21, OsRAB21, OsRAB-21, OsRab16A, OsLEA29, rab16A, OsRAB16A,OsIAA25,OsPYL/RCAR6, PYL6, OsPYL6, OsPYL5, PYL5,OsARF13, OsARF12, ARF12,OsEXPA17, OsEXP17, osaEXPa1.31,OsABA8OX2, OsABA8ox2, CYP707A6, OsCYP707A6, OsAba-ox2, OsABA8ox2, OsABA8OH2, ABA8OH2, ABA8'-OH2, OsABA8'ox2, ABA8'ox2, OsABAX2, ABAX2, OsABA8'OH2, ABA8'OH2,OsCAS, OAS-TL,OsARF10,OsLAX3, OsRAU3, OsAUX2, LAX3, AUX2, OsAUX3, AUX3, ARF2,PIN5B, OsPIN5b, OsPIN5c,OsRHD3,PIN5C, OsPIN5c, OsPIN5b, PIN4,OsSAUR27,rab21, OsLEA26, Rab16D, OsRab16,Em*, EMP1, Emp1, EM, Em, OsEm, Osem, OsLEA21, OsEm1, Em1 ,OsSAUR39,OsARF24,OsSAPK9, OsSnRK2.9, SnRK2.9,OsPIN2, PIN2, OsLRA1, WAR1, OsWAR1,OsIAA22,OsARF2, ARF2, OsETT2, ARF3a, OsARF3a, DLN16, OsDLN16, ARF3,OsbHLH115, bHLH115, OsRHL1,OsSAUR9, SAUR50,rab21, OsLEA27, rab16C, OsRAB16C, DHD,OsPYL/RCAR4, PYL4, OsPYL4, OsPYL6, PYL6,OsLEA25, LEA25, OsEnS-143, OsRAB21, RAB21, Rab17, OsRab17,rab21, OsLEA28, OsRAB16D, OsRab16d, Rab16d, OsRAB16b, XERO1, OsXERO1, OsRD22, RD22,OsSAPK1, OsSnRK2.1, SnRK2.1,OsGH3-4, OsGH3.4, GH3.4,OsPYL/RCAR1, PYL1, OsPYL1, OsPYL4, PYL4,OsJAR3, OsGH3.12, GH3.12, OsGH3-12, GH3-12
48595	32582927	Tang Z., Wang Y., Gao A., Ji Y., Yang B., Wang P., Tang Z., Zhao F.J.	Dimethylarsinic acid is the causal agent inducing rice straighthead disease.	J. Exp. Bot.			2020		
48596	32417578	Qi X., Tam N.F., Li W.C., Ye Z.	The role of root apoplastic barriers in cadmium translocation and accumulation in cultivars of rice (Oryza sativa L.) with different Cd-accumulating characteristics.	Environ. Pollut.	264	114736	2020		
48597	32454359	Wang Y., Zhang K., Lu L., Xiao X., Chen B.	Novel insights into effects of silicon-rich biochar (Sichar) amendment on cadmium uptake, translocation and accumulation in rice plants.	Environ. Pollut.	265(Pt B)	114772	2020		
48598	32433497	Du B., He L., Lai R., Luo H., Zhang T., Tang X.	Fragrant rice performances in response to continuous zero-tillage in machine-transplanted double-cropped rice system.	Sci Rep	10(1)	8326	2020		
48599	32536933	Ajeesh Krishna TP., Maharajan T., Victor Roch G., Ignacimuthu S., Antony Ceasar S.	Structure, Function, Regulation and Phylogenetic Relationship of ZIP Family Transporters of Plants.	Front Plant Sci	11	662	2020		
48600	32542992	Guo H.M., Li H.C., Zhou S.R., Xue H.W., Miao X.X.	Deficiency of mitochondrial outer membrane protein 64 confers rice resistance to both piercing-sucking and chewing insects in rice.	J Integr Plant Biol			2020	OM64	OsOM64
48601	32532001	Ye W., Zeng J., Hu W., Bustos-Segura C., Noman A., Lou Y.	The desaturase gene <i>Nlug-desatA2</i> Regulates the Performance of the Brown Planthopper <i>Nilaparvata lugens</i> and Its Relationship with Rice.	Int J Mol Sci	21(11)		2020		
48602	32484878	Che J., Yamaji N., Miyaji T., Mitani-Ueno N., Kato Y., Shen R.F., Ma J.F.	Node-localized transporters of phosphorus essential for seed development in rice.	Plant Cell Physiol.			2020		
48603	32610550	Kong W., Zhang C., Qiang Y., Zhong H., Zhao G., Li Y.	Integrated RNA-Seq Analysis and Meta-QTLs Mapping Provide Insights into Cold Stress Response in Rice Seedling Roots.	Int J Mol Sci	21(13)		2020		
48604	32771158	Li J., Yang Y., Chai M., Ren M., Yuan J., Yang W., Dong Y., Liu B., Jian Q., Wang S., Peng B., Yuan H., Fan H.	Gibberellins modulate local auxin biosynthesis and polar auxin transport by negatively affecting flavonoid biosynthesis in the root tips of rice.	Plant Sci.	298	110545	2020		
48605	32714909	Fu J., Liu B.	Exogenous Cry1Ab/c protein Recruits Different Endogenous Proteins for Its Function in Plant Growth and Development.	Front Bioeng Biotechnol	8	685	2020	CAMTA3,_,_,NYC4,DJA8,PSBC,_,DNRL1,SRS3,RBCL,PSBP,FREE1,C2DP16	OsCAMTA3, SCT2, OsSCT2, OsCAMTA2, CAMTA2,TRXz, OsTRXz,OsSET25, SDG726, OsSUVH2, DLN184, OsDLN184, HKMTs,OsNYC4, THF1, OsTHF1,OsDjA8, DjA8,psbC, cp43, OsPSBC, OsCP43,OsRFP, RLIM, OsRLIM,  OsRING399, RING399,OsDAHP1, DAHP1, DAHPS, OsDAHPS2, DAHPS2, OsDNRL1,OsSRS3, SAR1, OsSAR1, KIN13A, OsKIN13A,rbcL, rbcA, OsrbcL,PsbP, OsPsbP, psbP,OsFREE1, OsFYVE14, FYVE14,OsGAP1, GAP1, OsC2DP16
48606	32497208	Zou G., Zhai G., Yan S., Li S., Zhou L., Ding Y., Liu H., Zhang Z., Zou J., Zhang L., Chen J., Xin Z., Tao Y.	Sorghum qTGW1a encodes a G-protein subunit and acts as a negative regulator of grain size.	J. Exp. Bot.			2020		
48607	32603511	He L., Li M., Qiu Z., Chen D., Zhang G., Wang X., Chen G., Hu J., Gao Z., Dong G., Ren D., Shen L., Zhang Q., Guo L., Qian Q., Zeng D., Zhu L.	Primary Leaf-type Ferredoxin1 Participates in Photosynthetic Electron Transport and Carbon Assimilation in Rice.	Plant J.			2020		
48608	32582271	Ozaki H., Tokida T., Nakamura H., Sakai H., Hasegawa T., Noguchi K.	Atmospheric CO2 Concentration and N Availability Affect the Balance of the Two Photosystems in Mature Leaves of Rice Plants Grown at a Free-Air CO2 Enrichment Site.	Front Plant Sci	11	786	2020		
48609	32485068	Zeng D., Liu T., Ma X., Wang B., Zheng Z., Zhang Y., Xie X., Yang B., Zhao Z., Zhu Q., Liu Y.G.	Quantitative regulation of Waxy expression by CRISPR/Cas9-based promoter and 5'UTR-intron editing improves grain quality in rice.	Plant Biotechnol. J.			2020		
48610	32133499	Lilay G.H., Castro P.H., Guedes J.G., Almeida D.M., Campilho A., Azevedo H., Aarts M.G.M., Saibo N.J.M., Assun??o AGL.	Rice F-bZIP transcription factors regulate the zinc deficiency response.	J. Exp. Bot.	71(12)	3664-3677	2020		
48611	32527215	Zhang L., Huang J., Wang Y., Xu R., Yang Z., Zhao Z., Liu S., Tian Y., Zheng X., Li F., Wang J., Song Y., Li J., Cui Y., Zhang L.F., Cheng Y., Lan J., Qiao W., Yang Q.	Identification and genetic analysis of qCL1.2, a novel allele of the "green revolution" gene SD1 from wild rice (Oryza rufipogon) that enhances plant height.	BMC Genet.	21(1)	62	2020		
48612	32593756	Sun L., Yang Y., Wang R., Li S., Qiu Y., Lei P., Gao J., Xu H., Zhang F., Lv Y.	Effects of exopolysaccharide derived from Pantoea alhagi NX-11 on drought resistance of rice and its efficient fermentation preparation.	Int. J. Biol. Macromol.	162	946-955	2020		
48613	32742685	Guo Z., Cai L., Liu C., Huang C., Chen Z., Pan G., Guo T.	Global analysis of differentially expressed genes between two Japonica rice varieties induced by low temperature during the booting stage by RNA-Seq.	R Soc Open Sci	7(6)	192243	2020		
48614	32566820	Sidhu A., Bala A., Singh H., Ahuja R., Kumar A.	Development of MgO-sepoilite Nanocomposites against Phytopathogenic Fungi of Rice (<i>Oryzae sativa</i>): A Green Approach.	ACS Omega	5(23)	13557-13565	2020		
48615	32528064	Agata A., Ando K., Ota S., Kojima M., Takebayashi Y., Takehara S., Doi K., Ueguchi-Tanaka M., Suzuki T., Sakakibara H., Matsuoka M., Ashikari M., Inukai Y., Kitano H., Hobo T.	Diverse panicle architecture results from various combinations of Prl5/GA20ox4 and Pbl6/APO1 alleles.	Commun Biol	3(1)	302	2020	APO1,PRL5	apo1(t), apo1, SCM2, SCM2/APO1, OsFbox321, Os_F0393, Pbl6/APO1, Pbl6, OsPbl6,  OsFBX202, FBX202,OsGA20ox4, ga20ox4, GA20ox2, Prl5, Prl5/GA20ox4, OsPrl5
48616	32714056	Fujino K., Yamanouchi U.	Genetic effect of a new allele for the flowering time locus <i>Ghd7</i> in rice.	Breed. Sci.	70(3)	342-346	2020		
48617	32553088	Bhaduri D., Chakraborty K., Nayak A.K., Shahid M., Tripathi R., Behera R., Singh S., Srivastava A.K.	Alteration in plant spacing improves submergence tolerance in Sub1 and non-Sub1 rice (cv. IR64) by better light interception and effective carbohydrate utilisation under stress.	Funct. Plant Biol.			2020		
48618	32529315	Zhang T., Wang S., Sun S., Zhang Y., Li J., You J., Su T., Chen W., Ling Y., He G., Zhao F.	Analysis of QTL for grain size in a Rice Chromosome Segment Substitution Line Z1392 with Long Grains and Fine Mapping of qGL-6.	Rice (N Y)	13(1)	40	2020		
48619	32529481	Hu Z., Zheng L., Huang J., Zhou L., Liu C., Liu H.	Ustiloxin A is Produced Early in Experimental Ustilaginoidea virens Infection and Affects Transcription in Rice.	Curr. Microbiol.			2020		
48620	32525930	Islam M.Z., Arifuzzaman M., Banik S., Hossain M.A., Ferdous J., Khalequzzaman M., Pittendrigh B.R., Tomita M., Ali M.P.	Mapping QTLs underpin nutrition components in aromatic rice germplasm.	PLoS ONE	15(6)	e0234395	2020		
48621	32514747	Lou D., Chen Z., Yu D., Yang X.	SAPK2 contributes to rice yield by modulating nitrogen metabolic processes under reproductive stage drought stress.	Rice (N Y)	13(1)	35	2020		
48622	32597697	Liu H., Wang Z., Xu W., Zeng J., Li S., Li L., Gao Z.	Bacillus pumilus LZP02 promotes rice root growth by improving carbohydrate metabolism and phenylpropanoid biosynthesis.	Mol. Plant Microbe Interact.			2020		
48623	32583457	Wang Y., Hou Y., Qiu J., Wang H., Wang S., Tang L., Tong X., Zhang J.	Abscisic acid promotes jasmonic acid biosynthesis via a 'SAPK10-bZIP72-AOC' pathway to synergistically inhibit seed germination in rice (Oryza sativa).	New Phytol.			2020		
48624	32516520	Achary V.M.M., Sheri V., Manna M., Panditi V., Borphukan B., Ram B., Agarwal A., Fartyal D., Teotia D., Masakapalli S.K., Agrawal P.K., Reddy M.K.	Overexpression of improved EPSPS gene results in field level glyphosate tolerance and higher grain yield in rice.	Plant Biotechnol. J.			2020		
48625	32655609	Zhai L., Wang F., Yan A., Liang C., Wang S., Wang Y., Xu J.	Pleiotropic Effect of <i>GNP1</i> Underlying grain number per Panicle on Sink, Source and Flow in Rice.	Front Plant Sci	11	933	2020	GNP1	GA20OX1, OsGA20ox1, 20ox1, GA20ox-1, ga20ox1, Os20ox, C20OX2, OsGA20ox2, OsGA20ox-1, GA20ox1, OsGNP1
48626	32528176	Wang L., Wang B., Yu H., Guo H., Lin T., Kou L., Wang A., Shao N., Ma H., Xiong G., Li X., Yang J., Chu J., Li J.	Transcriptional regulation of strigolactone signalling in Arabidopsis.	Nature	583(7815)	277-281	2020		
48627	32490579	Guo H., Zeng Y., Li J., Ma X., Zhang Z., Lou Q., Li J., Gu Y., Zhang H., Li J., Li Z.	Differentiation, evolution and utilization of natural alleles for cold adaptability at the reproductive stage in rice.	Plant Biotechnol. J.			2020	DJC14,CAMTA,MADS51,CTB4A,TFX1,BZIP71,HK3	OsDjC14,OsCAMTA, qSCT1, OsCAMTA4, CAMTA4,OsMADS51, OsMADS65, MADS65, qHd1, DLN36, OsDLN36,OsRLCK127, RLCK127, OsCTB4a, qCTB4-1,OsbZIP73, bZIP73, OsTFX1,OsbZIP71, DLN221, OsDLN221, DLN222, OsDLN222,OHK2, HK, OsHK3, Ohk, Crl2, Ohk2, OsHK3b, OsHK03
48628	32570176	Rakhmetullina A., Pyrkova A., Aisina D., Ivashchenko A.	In silico prediction of human genes as potential targets for rice miRNAs.	Comput Biol Chem	87	107305	2020		
48629	32502907	Li X., Peng D., Zhang Y., Ju D., Guan C.	Klebsiella sp. PD3, a phenanthrene (PHE)-degrading strain with plant growth promoting properties enhances the PHE degradation and stress tolerance in rice plants.	Ecotoxicol. Environ. Saf.	201	110804	2020		
48630	32517652	Li Y., Xu L., Letuma P., Lin W.	Metabolite profiling of rhizosphere soil of different allelopathic potential rice accessions.	BMC Plant Biol.	20(1)	265	2020		
48631	32655602	Wang Y., Wang K., Wang Q., Wan Y., Zhuang Z., Yu Y., Li H.	Selenite Uptake and Transformation in Rice Seedlings (<i>Oryza sativa</i> L.): Response to Phosphorus Nutrient Status.	Front Plant Sci	11	874	2020		
48632	32594636	Huerta A.I., Delorean E.E., Bossa-Castro AM., Tonnessen B.W., Raghavan C., Corral R., P?rez-Quintero ?L., Leung H., Verdier V., Leach J.E.	Resistance and susceptibility QTL identified in a rice MAGIC population by screening with a minor-effect virulence factor from Xanthomonas oryzae pv. oryzae.	Plant Biotechnol. J.			2020		
48633	32612630	Cui Y., Wang J., Feng L., Liu S., Li J., Qiao W., Song Y., Zhang Z., Cheng Y., Zhang L., Zheng X., Yang Q.	A Combination of Long-Day Suppressor Genes Contributes to the Northward Expansion of Rice.	Front Plant Sci	11	864	2020	HD5,HD6,SE1,COL4,PHYB,GHD7,HD2	Hd5(t)*, Hd5, qHD5, HAP3H, OsHAP3H, NF-YB, CBF-A, DTH8 , qHD5(t)*, Ghd8, Ghd8/DTH8, Lhd1, NF-YB11, OsNF-YB11, NFYB11, LH8, DTH8/Ghd8, RH8, DTH8/Ghd8/LHD1, CAR8, DTH8/Ghd8/ OsHAP3H, EF8, OsEF8,Hd6(t)*, OSCKA2, OsCKA2, CKA2, OsCKA2-1, CKA2-1, Hd6/CK2alpha, CK2alpha,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, OsHd1,  Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,OsCOL4, OsD, OsBBX5, OsCOL4/OsD, OsCCT06, BBX5, CCT06,phyB, PHYB1, OsPHYB, OsphyB, OsYHB, YHB, OsPHYB/OsYHB,Ghd2, Ghd7, OsGhd7, OsCCT26, OsCMF8, OsI, Ghd7/Hd4, Hd4, EH7-1/Hd4, Ghd7-0a, EH7-1, EH7/Ghd7, EH7, OsEH7, GLW7.1, OsGLW7.1,Hd2(t), Hd2, qHD2(t), OsPRR37, Os-PRR37, PRR37, Prr4, OsPRR4, DTH7, Os DTH7, OsCCT28, CCT28, Ghd7.1, PRR37/Hd2, EH7-2, EH7-2/Hd2, Hd2/PRR37, PRR37-1a, PRR37-1b, PRR37-1c, PRR37-2a, PRR37- 2, HD7.2
48634	32167545	Zhong R., Cui D., Phillips D.R., Richardson E.A., Ye Z.H.	A Group of O-Acetyltransferases Catalyze Xyloglucan Backbone Acetylation and Can Alter Xyloglucan Xylosylation Pattern and Plant Growth When Expressed in Arabidopsis.	Plant Cell Physiol.	61(6)	1064-1079	2020	TBL61,TBL55,TBL64,TBL63,TBL58,TBL60,TBL57	OsTBL61, OsXyBAT5, XyBAT5,OsTBL55, OsXyBAT3, XyBAT3,OsTBL64, OsXyBAT7, XyBAT7,OsTBL63, OsXyBAT6, XyBAT6,OsTBL58, OsXyBAT2, XyBAT2,OsTBL60, OsXyBAT4, XyBAT4,OsTBL57, OsXyBAT1, XyBAT1
48635	32586052	Usman B., Nawaz G., Zhao N., Liu Y., Li R.	Generation of High Yielding and Fragrant Rice (<i>Oryza sativa</i> L.) Lines by CRISPR/Cas9 Targeted Mutagenesis of Three Homoeologs of Cytochrome P450 Gene Family and <i>OsBADH2</i> and Transcriptome and Proteome Profiling of Revealed Changes Triggered by Mutations.	Plants (Basel)	9(6)		2020	SK2(T)(SCL, FGR),GL3.2,CYP78A11,CYP71E1	sk2(t)(scl, fgr), fgr, scl, BAD2, BADH2, sk2, OsBADH2, Badh2, badh2, Os2AP, BADH-2, OsALDH10A8, ALDH10A8 ,GL3.2,Cyt P450 78A11, OsCYP78A11,Cyt P450 71E1, OsCYP71E1, OsCYP71E2, CYP71E2
48636	32559249	Bagnaresi P., Cattivelli L.	Ab initio GO-based mining for non-tandem-duplicated functional clusters in three model plant diploid genomes.	PLoS ONE	15(6)	e0234782	2020		
48637	32488303	Islam M.S., Coronejo S., Subudhi P.K.	Whole-genome sequencing reveals uniqueness of black-hulled and straw-hulled weedy rice genomes.	Theor. Appl. Genet.	133(8)	2461-2475	2020		
48638	32498740	Redoy M.R.A., Shuvo A.A.S., Cheng L., Al-Mamun M.	Effect of herbal supplementation on growth, immunity, rumen histology, serum antioxidants and meat quality of sheep.	Animal		1-9	2020		
48639	32517150	Shen T., Zhang C., Liu F., Wang W., Lu Y., Chen R., He Y.	High-Throughput Screening of Free Proline Content in Rice Leaf under Cadmium Stress Using Hyperspectral Imaging with Chemometrics.	Sensors (Basel)	20(11)		2020		
48640	32625221	Xu W., Tang W., Wang C., Ge L., Sun J., Qi X., He Z., Zhou Y., Chen J., Xu Z., Ma Y.Z., Chen M.	<i>SiMYB56</i> Confers Drought Stress Tolerance in Transgenic Rice by Regulating Lignin Biosynthesis and ABA Signaling Pathway.	Front Plant Sci	11	785	2020		
48641	32494867	Yu H., Shahid M.Q., Li Q., Li Y., Li C., Lu Z., Wu J., Zhang Z., Liu X.	Production Assessment and Genome Comparison Revealed High Yield Potential and Novel Specific Alleles Associated with Fertility and Yield in Neo-Tetraploid Rice.	Rice (N Y)	13(1)	32	2020	KIN7L,BZR3,CLPC3,KIN14M,NRFG4,NRFG3,NRFG6,NRFG5,NRFG2	OsKIN7L,OsBZR3, OsBES1-5, BES1-5,ClpC3, OsCLPC3,OsKIN14M,OsRH52A, RH52A, OsNRFG4,OsENODL17, ENODL17, OsNRFG3,OsNRFG6, SDRLK-38, OsSDRLK-38, SDRLK38, OsSDRLK38,OsRH51, RH51, OsNRFG5,PFL, OsNRFG2
48642	32537916	Zhu J., Eid F.E., Tong L., Zhao W., Wang W., Heath L.S., Kang L., Cui F.	Characterization of protein-protein interactions between rice viruses and vector insects.	Insect Science			2020		
48643	32595689	Krishnamurthy S.L., Pundir P., Warraich A.S., Rathor S., Lokeshkumar B.M., Singh N.K., Sharma P.C.	Introgressed Saltol QTL Lines Improves the Salinity Tolerance in Rice at Seedling Stage.	Front Plant Sci	11	833	2020		
48644	32559183	Jamaloddin M., Durga Rani CV., Swathi G., Anuradha C., Vanisri S., Rajan C.P.D., Krishnam Raju S., Bhuvaneshwari V., Jagadeeswar R., Laha G.S., Prasad M.S., Satyanarayana P.V., Cheralu C., Rajani G., Ramprasad E., Sravanthi P., Arun Prem Kumar N., Aruna Kumari K., Yamini K.N., Mahesh D., Sanjeev Rao D., Sundaram R.M., Madhav M.S.	Marker Assisted Gene Pyramiding (MAGP) for bacterial blight and blast resistance into mega rice variety "Tellahamsa".	PLoS ONE	15(6)	e0234088	2020		
48645	32561756	Araki S., Le N.T., Koizumi K., Villar-Briones A., Nonomura K.I., Endo M., Inoue H., Saze H., Komiya R.	miR2118-dependent U-rich phasiRNA production in rice anther wall development.	Nat Commun	11(1)	3115	2020	MIR2118O,MIR2118J,MIR2118H,AGO1B,MIR2118L,MEL1,MIR2118N,MIR2118F,MIR2118G,MIR2118C,MIR2118I,MIR2118M,MIR2118E,MIR2118K,MIR2118D,AGO1D,TDR,MIR2118B,BHLH142	miR2118o, osa-miR2118o, osa-MIR2118o,miR2118j, osa-miR2118j, osa-MIR2118j,miR2118h, osa-miR2118h, osa-MIR2118h,OsAGO1b, AGO1b, AGO1-2 ,miR2118l, osa-miR2118l, osa-MIR2118l,mel1, OsMEL1, MEAL1, OsMEAL1, OsAGO5c ,miR2118n, osa-miR2118n, osa-MIR2118n,miR2118f, osa-miR2118f, osa-MIR2118f,miR2118g, osa-miR2118g, osa-MIR2118g,miR2118c, osa-miR2118c, osa-MIR2118c,miR2118i, osa-miR2118i, osa-MIR2118i,miR2118m, osa-miR2118m, osa-MIR2118m,miR2118e, osa-miR2118e, osa-MIR2118e,miR2118k, osa-miR2118k, osa-MIR2118k,miR2118d, osa-miR2118d, osa-MIR2118d,OsAGO1d, AGO1d,tdr, OsbHLH005, bHLH005, OsbHLH5, bhlh5, TDR1, OsTDR, OsTDR1, OsMYC5, MYC5,miR2118b, osa-miR2118b, osa-MIR2118b,OsbHLH142, bHLH142, TIP2, OsTIP2, TIP2/TDR/bHLH142
48646	32549280	Nutho B., Pengthaisong S., Tankrathok A., Lee V.S., Ketudat Cairns JR., Rungrotmongkol T., Hannongbua S.	Structural Basis of Specific Glucoimidazole and Mannoimidazole Binding by Os3BGlu7.	Biomolecules	10(6)		2020		
48647	32576897	Mondal S., Khan M.I.R., Entila F., Dixit S., Sta Cruz PC., Panna Ali M., Pittendrigh B., Septiningsih E.M., Ismail A.M.	Responses of AG1 and AG2 QTL introgression lines and seed pre-treatment on growth and physiological processes during anaerobic germination of rice under flooding.	Sci Rep	10(1)	10214	2020		
48648	32655603	Huang L., Liu H., Wu J., Zhao R., Li Y., Melaku G., Zhang S., Huang G., Bao Y., Ning M., Chen B., Gong Y., Hu Q., Zhang J., Zhang Y.	Evolution of Plant Architecture in <i>Oryza</i> Driven by the <i>PROG1</i> Locus.	Front Plant Sci	11	876	2020		
48649	32558105	Xu Y., Lin Q., Li X., Wang F., Chen Z., Wang J., Li W., Fan F., Tao Y., Jiang Y., Wei X., Zhang R., Zhu Q.H., Bu Q., Yang J., Gao C.	Fine-tuning the amylose content of rice by precise base editing of the Wx gene.	Plant Biotechnol. J.			2020		
48650	32717536	Singh D.P., Singh V., Shukla R., Sahu P., Prabha R., Gupta A., Sarma B.K., Gupta V.K.	Stage-dependent concomitant microbial fortification improves soil nutrient status, plant growth, antioxidative defense system and gene expression in rice.	Microbiol. Res.	239	126538	2020		
48651	32604045	Narayanasamy S., Thangappan S., Uthandi S.	Plant Growth-Promoting Bacillus sp. Cahoots Moisture Stress Alleviation in Rice Genotypes by Triggering Antioxidant Defense System.	Microbiol. Res.	239	126518	2020		
48652	32595693	Wang W., Zhao M., Zhang G., Liu Z., Hua Y., Jia X., Song J., Ma D., Sun J.	Weedy Rice as a Novel Gene Resource: A Genome-Wide Association Study of Anthocyanin Biosynthesis and an Evaluation of Nutritional Quality.	Front Plant Sci	11	878	2020		
48653	32513834	Wang G., Li H., Meng S., Yang J., Ye N., Zhang J.	Analysis of Global Methylome and Gene Expression during Carbon Reserve Mobilization in Stems under Soil Drying.	Plant Physiol.	183(4)	1809-1824	2020		
48654	32566966	Lu L., Yang D., Tang D., Li S., Chen Z.	Transcriptome analysis of different rice cultivars provides novel insights into the rice response to bacterial leaf streak infection.	Funct. Integr. Genomics			2020		
48655	32670308	Long M., Shou J., Wang J., Hu W., Hannan F., Mwamba T.M., Farooq M.A., Zhou W., Islam F.	Ursolic Acid Limits Salt-Induced Oxidative Damage by Interfering With Nitric Oxide Production and Oxidative Defense Machinery in Rice.	Front Plant Sci	11	697	2020		
48656	32572635	Jia Y., Liu H., Qu Z., Wang J., Wang X., Wang Z., Yang L., Zhang D., Zou D., Zhao H.	Transcriptome Sequencing and iTRAQ of Different Rice Cultivars Provide Insight into Molecular Mechanisms of Cold-Tolerance Response in Japonica Rice.	Rice (N Y)	13(1)	43	2020		
48657	32504578	Yang Z., Huang Y., Yang J., Yao S., Zhao K., Wang D., Qin Q., Bian Z., Li Y., Lan Y., Zhou T., Wang H., Liu C., Wang W., Qi Y., Xu Z., Li Y.	Jasmonate Signaling Enhances RNA Silencing and Antiviral Defense in Rice.	Cell Host Microbe	28(1)	89-103.e8	2020		
48658	32572623	Campo S., Mart?n-Cardoso H., Oliv? M., Pla E., Catala-Forner M., Mart?nez-Eixarch M., San Segundo B.	Effect of Root Colonization by Arbuscular Mycorrhizal Fungi on Growth, Productivity and Blast Resistance in Rice.	Rice (N Y)	13(1)	42	2020		
48659	32647453	Gindri R.G., Navarro B.B., da Cruz Dias PV., Tarouco C.P., Nicoloso F.T., Brunetto G., Berghetti ?LP., da Silva LOS., Fett J.P., Menguer P.K., Ricachenevsky F.K.	Physiological responses of rice (<i>Oryza sativa</i> L.) <i>OsZIP7</i> loss-of-function plants exposed to varying Zn concentrations.	Physiol Mol Biol Plants	26(7)	1349-1359	2020		
48660	32636871	Kong W., Sun T., Zhang C., Qiang Y., Li Y.	Micro-Evolution Analysis Reveals Diverged Patterns of Polyol Transporters in Seven Gramineae Crops.	Front Genet	11	565	2020		
48661	32724630	Chu C., Lu C., Yuan J., Xing C.	Fate of Fe3O4@NH2 in soil and their fixation effect to reduce lead translocation in two rice cultivars.	Food Sci Nutr	8(7)	3673-3681	2020		
48662	32585549	Adil M.F., Sehar S., Han Z., Wa Lwalaba JL., Jilani G., Zeng F., Chen Z.H., Shamsi I.H.	Zinc alleviates cadmium toxicity by modulating photosynthesis, ROS homeostasis, and cation flux kinetics in rice.	Environ. Pollut.	265(Pt B)	114979	2020		
48663	32580699	Dasgupta P., Das A., Datta S., Banerjee I., Tripathy S., Chaudhuri S.	Understanding the early cold response mechanism in IR64 indica rice variety through comparative transcriptome analysis.	BMC Genomics	21(1)	425	2020		
48664	32556633	Liu S., Tang Y., Ruan N., Dang Z., Huang Y., Miao W., Xu Z., Li F.	The Rice bz1 Locus Is Required for Glycosylation of Arabinogalactan Proteins and Galactolipid and Plays a Role in both Mechanical Strength and Leaf Color.	Rice (N Y)	13(1)	41	2020	PHD1,CESA3,BC1,BC7,CESA8,CESA6,BC6,FC24,CESA7	OsPHD1,  LM212-1,OsCesA3, OsCESA3, OS_CESA03,bc1, bc-1, OsBC1, CWA1, FP1, OsPCS3, PCS3,OsCesA4, OsCESA4, CESA4, OS_CESA04, BC11, bc7t, Bc7(t), bc-7, OsCesA 4, CesA4, FC17/CESA4, FC17, OsFC17,OsCesA8, OsCESA8, OS_CESA08, CesA8,OsCesA6, OsCESA6, OS_CESA06,Bc6*, Bc6, OsCesA9, CESA9, OsCESA9, OS_CESA09, OsCesA 9, CesA9, BC88, SDBC1, OsSDBC1,OsUGE2, UGE2, OsFC24, BZ1, OsBZ1, OsBP1, BP1,OsCesA7, OsCESA7, OS_CESA07, OsCesA 7, CesA7
48665	32506267	Son H., Kim B., Lee G., Jang S., Lee Y., Koh H.J.	Identification and characterization of the stunted sterile (ss) mutant in rice.	Genes Genomics	42(8)	869-882	2020		
48666	32516948	Ansari W.A., Chandanshive S.U., Bhatt V., Nadaf A.B., Vats S., Katara J.L., Sonah H., Deshmukh R.	Genome Editing in Cereals: Approaches, Applications and Challenges.	Int J Mol Sci	21(11)		2020		
48667	32559019	Sun J., Cui X., Teng S., Kunnong Z., Wang Y., Chen Z., Sun X., Wu J., Ai P., Quick W.P., Lu T., Zhang Z.	HD-ZIP IV gene Roc8 regulates the size of bulliform cells and lignin content in rice.	Plant Biotechnol. J.			2020	SRL1,URL1,GO,LAC4,CEF1	OsSRL1, CLD1/SRL1, CLD1, OsCLD1, OsSPARK9, SPARK9,ROC8, Roc8(t), Roc8, OsROC8, GL2-8, CRM1, OsCRM1, Os URL1, OsHDZ20, OsHDZIP20, HDZ20, HDZIP20,go, go1, pla3, PLA3, PLA3/GO, OsLBD3-7, LBD3-7,Oslacc, lacc, OsLAC4, OsLAC17, LAC17,OsMYB103, OsMYB103L, CEF1/OsMYB103L, MYB103, MYB103L, OsMYB93, MYB93, OsFC9, FC9, Os2R_MYB74, 2R_MYB74
48668	32572646	Xue C., Qiao Z., Chen X., Cao P., Liu K., Liu S., Ye L., Gong Z.	Proteome-Wide Analyses Reveal the Diverse Functions of lysine 2-Hydroxyisobutyrylation in Oryza sativa.	Rice (N Y)	13(1)	34	2020		
48669	32533096	Wang Q., Zeng X., Song Q., Sun Y., Feng Y., Lai Y.	Identification of key genes and modules in response to Cadmium stress in different rice varieties and stem nodes by weighted gene co-expression network analysis.	Sci Rep	10(1)	9525	2020		
48670	32619768	Yan J., Zou D., Li C., Zhang Z., Song S., Wang X.	SR4R: An Integrative SNP Resource for Genomic Breeding and Population Research in Rice.	Genomics, proteomics & bioinformatics			2020		
48671	32529332	Chen Z., Lu Y., Feng L., Hao W., Li C., Yang Y., Fan X., Li Q., Zhang C., Liu Q.	Genetic Dissection and Functional Differentiation of ALKa and ALKb, Two Natural Alleles of the ALK/SSIIa Gene, Responding to Low gelatinization temperature in Rice.	Rice (N Y)	13(1)	39	2020	ALK	alk, SSII-3, OsSSIIa, OsSSII-3, SSIIa, SSS2A, OsSSIIaChr6, SS2a
48672	32488495	Jiang H., Feng Y., Qiu L., Gao G., Zhang Q., He Y.	Identification of Blast Resistance QTLs Based on Two Advanced Backcross Populations in Rice.	Rice (N Y)	13(1)	31	2020		
48673	32771173	Lee S.K., Jeon J.S.	Review: Crucial role of inorganic pyrophosphate in integrating carbon metabolism from sucrose breakdown to starch synthesis in rice endosperm.	Plant Sci.	298	110572	2020		
48674	32559639	Pal Negi A., Singh R., Sharma A., Negi V.S.	Insights into high mobility group A (HMGA) proteins from Poaceae family: An in silico approach for studying homologs.	Comput Biol Chem	87	107306	2020		
48675	32642524	Sew Y.S., Aizat W.M., Razak MSFA., Zainal-Abidin RA., Simoh S., Abu-Bakar N.	Comprehensive proteomics data on whole rice grain of selected pigmented and non-pigmented rice varieties using SWATH-MS approach.	Data Brief	31	105927	2020		
48676	32552395	Qiu J., Lu Y., He D., Lee Y.W., Ji F., Xu J., Shi J.	<i>Fusarium</i><i>fujikuroi</i> Species Complex Associated With Rice, Maize, and Soybean From Jiangsu Province, China: Phylogenetic, Pathogenic, and Toxigenic Analysis.	Plant Dis.	104(8)	2193-2201	2020		
48677	32495182	Shimizu-Sato S., Tsuda K., Nosaka-Takahashi M., Suzuki T., Ono S., Ta K.N., Yoshida Y., Nonomura K.I., Sato Y.	Agrobacterium-Mediated Genetic Transformation of Wild Oryza Species Using Immature Embryos.	Rice (N Y)	13(1)	33	2020		
48678	32601432	Wang S., Zong Y., Lin Q., Zhang H., Chai Z., Zhang D., Chen K., Qiu J.L., Gao C.	Precise, predictable multi-nucleotide deletions in rice and wheat using APOBEC-Cas9.	Nat. Biotechnol.			2020		
48679	32519122	Tan Q., Zou T., Zheng M., Ni Y., Luan X., Li X., Yang W., Yang Z., Zhu H., Zeng R., Liu G., Wang S., Fu X., Zhang G.	Substitution Mapping of the Major Quantitative Trait Loci Controlling Stigma Exsertion Rate from Oryza glumaepatula.	Rice (N Y)	13(1)	37	2020		
48680	32559220	Toda Y., Wakatsuki H., Aoike T., Kajiya-Kanegae H., Yamasaki M., Yoshioka T., Ebana K., Hayashi T., Nakagawa H., Hasegawa T., Iwata H.	Predicting biomass of rice with intermediate traits: Modeling method combining crop growth models and genomic prediction models.	PLoS ONE	15(6)	e0233951	2020		
48681	32570706	Zhang H., Wang H., Yao Y., Yi M.	plantMirP-Rice: An Efficient Program for Rice Pre-miRNA Prediction.	Genes (Basel)	11(6)		2020		
48682	32493511	Song L., Xie K.	Engineering CRISPR/Cas9 to mitigate abundant host contamination for 16S rRNA gene-based amplicon sequencing.	Microbiome	8(1)	80	2020		
48683	32518274	Nam K.H., Kim D.Y., Moon Y.S., Pack I.S., Jeong S.C., Kim H.B., Kim C.G.	Performance of hybrids between abiotic stress-tolerant transgenic rice and its weedy relatives under water-stressed conditions.	Sci Rep	10(1)	9319	2020		
48684	32546280	Li C., Zong Y., Jin S., Zhu H., Lin D., Li S., Qiu J.L., Wang Y., Gao C.	SWISS: multiplexed orthogonal genome editing in plants with a Cas9 nickase and engineered CRISPR RNA scaffolds.	Genome Biol.	21(1)	141	2020		
48685	32566707	Zainal-Abidin RA., Zainal Z., Mohamed-Hussein ZA., Sew Y.S., Simoh S., Ab Razak S., Abu-Bakar N.	Data on genome resequencing of pigmented and non-pigmented Malaysian rice varieties.	Data Brief	31	105806	2020		
48686	32595985	Zhou Y., Liao L., Liu X., Liu B., Chen X., Guo Y., Huang C., Zhao Y., Zeng Z.	Crystal structure of <i>Oryza sativa</i> TDC reveals the substrate specificity for TDC-mediated melatonin biosynthesis.	Journal of Advanced Research	24	501-511	2020	TDC1	OsTDC, TDC, TDC2, OsTDC1, OsTDC4
48687	32513103	Campbell M.T., Du Q., Liu K., Sharma S., Zhang C., Walia H.	Characterization of the transcriptional divergence between the subspecies of cultivated rice (Oryza sativa).	BMC Genomics	21(1)	394	2020		
48688	31245682	Yamazaki S., Ueda Y., Mukai A., Ochiai K., Matoh T.	Rice phytochelatin synthases OsPCS1 and OsPCS2 make different contributions to cadmium and arsenic tolerance.	Plant Direct	2(1)	e00034	2018	PCS5,PCS1	OsPCS, PCS, OsPCS2, PCS2, OsPCS2a, PCS2a, OsPCS2b, PCS2b, OsPCS1, PCS1, OsPCS1a, OsPCS1b, OsPCS1c, OsPCS1full, OsPCS5,OsPCS1, OsPCS2, PCS2, OsPCS15, PCS15
48689	28626464	Zarattini M., Forlani G.	Toward Unveiling the Mechanisms for Transcriptional Regulation of Proline Biosynthesis in the Plant Cell Response to Biotic and Abiotic Stress Conditions.	Front Plant Sci	8	927	2017	P5CS,ALDH18B2	OsP5CS, P5CS1, OsP5CS1, OsALDH18B1, ALDH18B1, OsP5CS-1, P5CS-1,P5CS2, OsP5CS2, OsALDH18B2 
48690	9506846	A Morita, T Umemura, M Kuroyanagi, Y Futsuhara, P Perata, J Yamaguchi	Functional dissection of a sugar-repressed alpha-amylase gene (RAmy1 A) promoter in rice embryos.	FEBS Lett.	423(1)	81-5	1998	AMY1A	Amy1A/C*(RAmy1A/C), alpha Amy7, AMY1.1, Amy1A, RAmy1A/C, Amy1A/C*, Amy1, Amy1A_C, OsAmy1A, alphaAmy7-C, RAmy1A, AmyI-1, OsAmyI-1, OsRamy1A
48691	0	Huang J., Toyofuku K., Yamaguchi J., Akita S.	Expression of alpha-amylase Isoforms and the RAmylA Gene in Rice (Oryza sativa L.) during Seed Germination, and its Relationship with coleoptile length in Submerged Soil	Plant Prod. Sci.	3	32-37	2000	AMY1A	Amy1A/C*(RAmy1A/C), alpha Amy7, AMY1.1, Amy1A, RAmy1A/C, Amy1A/C*, Amy1, Amy1A_C, OsAmy1A, alphaAmy7-C, RAmy1A, AmyI-1, OsAmyI-1, OsRamy1A
48692	17877710	Dreni L., Jacchia S., Fornara F., Fornari M., Ouwerkerk P.B., An G., Colombo L., Kater M.M.	The D-lineage MADS-box gene OsMADS13 controls ovule identity in rice.	Plant J.	52(4)	690-9	2007	MADS13,MADS21	OsMADS13, MAF1, RMADS206,OsMADS21, RMADS207
48693	32075556	Debladis E., Tzuu-Fen Lee, Yan-Jiun Huang, Jui-Hsien Lu, Sandra M Mathioni, Marie-Christine Carpentier, Llauro C., Pierron D., Mieulet D., Guiderdoni E., Pao-Yang Chen, Blake C Meyers, Panaud O., Lasserre E.	Construction and characterization of a knock-down RNA interference line of <i>OsNRPD1</i> in rice (<i>Oryza sativa</i> ssp <i>japonica</i> cv Nipponbare).	Philos. Trans. R. Soc. Lond., B, Biol. Sci.	375(1795)	20190338	2020	NRPD1B,NRPD1A	OsNRPD1b,OsNRPD1a
48694	32669710	Nagai K., Mori Y., Ishikawa S., Furuta T., Gamuyao R., Niimi Y., Hobo T., Fukuda M., Kojima M., Takebayashi Y., Fukushima A., Himuro Y., Kobayashi M., Ackley W., Hisano H., Sato K., Yoshida A., Wu J., Sakakibara H., Sato Y., Tsuji H., Akagi T., Ashikari M.	Antagonistic regulation of the gibberellic acid response during stem growth in rice.	Nature	584(7819)	109-114	2020	PINE1,FPFL5,ACE1	OsPINE1, DLN266, OsDLN266, DEC1, OsDEC1,OsFPFL5, ACL1, OsACL1,OsACE1, OsSIN, SIN
48695	32691446	Zi-Sheng Zhang, Alfatih A., Wu J., Sami Ullah Jan, Jin-Qiu Xia, Cheng-Bin Xiang	Loss of rice PARAQUAT?TOLERANCE 3 confers enhanced resistance to abiotic stresses and increases grain yield in field.	Plant Cell Environ.			2020	PQT3	OsPQT3
48696	32628357	Li H., Sun H., Jiang J., Sun X., Tan L., Sun C.	TAC4 controls tiller angle by regulating the endogenous auxin content and distribution in rice.	Plant Biotechnol. J.			2020	YUCCA7,YUCCA5,YUCCA6,TAC4,IAA20	OsYUCCA7, OsYUC7, OsYUC5, YUC5, YUC7,OsYUCCA5, OsYUC5, YUC5,OsYUCCA6, OsYUC6, YUC6,OsTAC4, OsBC17, BC17,OsIAA20
48697	32652697	Matsumoto H., Yasui Y., Ohmori Y., Tanaka W., Ishikawa T., Numa H., Shirasawa K., Taniguchi Y., Tanaka J., Suzuki Y., Hiro-Yuki Hirano	CURLED LATER1 encoding the largest subunit of the Elongator complex has a unique role in leaf development and meristem function in rice.	Plant J.			2020	HAG703,CUR1	OsHAG703, OsELP3, ELP3,OsCUR1
48698	32654074	Zhu X., Mou C., Zhang F., Huang Y., Yang C., Ji J., Liu X., Cao P., Nguyen T., Lan J., Zhou C., Liu S., Jiang L., Wan J.	WSL9 Encodes an HNH endonuclease domain-containing protein that Is Essential for Early Chloroplast Development in Rice.	Rice (N Y)	13(1)	45	2020	DVR,YS53,RPOB,RBCL,HEMA,ELL,PSAA,YGL18 ,WSP1,CHLH,_,YL1,LM3,WSL9,PORA	OsDVR,GSA, GSAT, HEML, OsGSA, OsGSAT, OsHEML, OsGSAM, GSAM, OsYS53,rpoB, RpoB, Rpobeta,rbcL, rbcA, OsrbcL,HEMA1, OsHEMA, GluTR, OsHEMA1, hemA,chlI, OsChlI, ChlI, CHLI, OsCHLI, OsCHLI/ELL, OsELL,PsaA, psaA, PsAA1, psaA1,ChlM, CHLM, MgMT, OsYGL18,OsChlM, OsCHLM, OsMgMT,OsWSP1, OsMORF2b, MORF2b, OsMORF2, OsMORF2/WSP1,OsChlH, ChlH, OsCHLH,ALAD, HEMB, OsALAD, OsHEMB, hemB,MTC, OsMTC, YGL8, OsYGL8, OsCRD1, CRD1, OsCRD, CRD, YL-1, PNZIP, OsPNZIP,UroD, URO-D, OsLM3, OsUroD, OsURO-D,OsWSL9,OsPorA, OsPORA
48699	32661060	He Y., Shi Y., Zhang X., Xu X., Wang H., Li L., Zhang Z., Shang H., Wang Z., Jian-Li Wu	The OsABCI7 Transporter Interacts with OsHCF222 to Stabilize the Thylakoid Membrane in Rice.	Plant Physiol.	184(1)	283-299	2020	ATR,RAD51A2,ST1,RAD51C,HCF222,PARP1,ATM,V3,SHL2,TSC1	OsATR,OsRad51A2, OsRAD51,st1(ws1), ws1, st1, OsST1, RNRS1, OsRNRS1, rnrs1, RNRS, SDL/RNRS1, SDL, OsSDL, NSL2, OsNSL2,OsRAD51C, OsRad51C, RAD51C-1, RAD51C-2, RAD51C-3,OsHCF222,OsPARP1, PARP, OsPARP1.1, OsPARP1.2,OsATM,v3, RNRL1, rnrl1, RNR1, RNRL, Osv3, OsRNRL1, OsRNR1, OsRNRL,shl2, SHL2, sh2, OsRDR6, RDR6,ABCI7, OsABCI7, OsABCI7_1, OsABCI7_2, OsABCI8, ABCI8, OsABCI8.1, OsABCI8.2, OsCNL1, CNL1, OsTSC1, TSC1.1, TSC1.2
48700	32681435	Fang G., Yang S., Ruan B., Liu C., Zhang A., Jiang H., Ding S., Tian B., Zhang Y., Jahan N., Zhu L., Zhang G., Dong G., Zhang Q., Zeng D., Guo L., Gao Z., Qian Q.	Isolation of TSCD11 Gene for Early Chloroplast Development under High Temperature in Rice.	Rice (N Y)	13(1)	49	2020	YGL10,WRKY70,CHLH,V2,TSCD11,SGR,SODB,CATB,SODA1,AMTR1,PORA,RPL21,APX1,AOX1A,HSA1,RPOTP,V1,RBCL,DVR,WP2,CAB1R,AOX1B,WRKY72,WRKY24,FTSZ1,PSAA,PSBA	CAO, OsCAO, CAO1, OsCAO1, Oslls1, Lls1, DVR, PGL,OsWRKY70,OsChlH, ChlH, OsCHLH,v2, mGmk, GMK, Gmk, pt/mtGK, pt/mt GK, OsV2, OsGMK,OsTSCD11,sgr(t), sgr, OsSGR, OsSgr, SGR1, OsSGR1,SodB, Fe-SOD, Fe- SOD, OsFe-SOD, Fe+-SOD, OsFe+-SOD, OsFe-SODa, OsFe-SODb, OsFeSODb, FeSODb, OsFSD1.2, FSD1.2, FeSOD2, OsFSD2, FSD2, OsFSD1, FSD1, ALM1, OsALM1,CatB, CAT-B, OsCatB, OsCATB, OsCAT1B, CAT1B, CAT2, OsCAT2,SodA1, OsSODA1, Mn-SOD, Mn- SOD, OsMSD, MnSOD, OsMnSOD, MnSOD1, OsMnSOD1,Osh36, OsH36, H36, OsAMTR1,OsPorA, OsPORA,OsRPL21, Rpl21, OsRpl21,OsAPX1, APXa, OsAPXa, OsAPx01, OsAPx1, OSAPX1, APx1, cAPX, APX2, cAPXa, OscAPXa,Ao1-1, AOX1a, OsAOX1a, AOX 1a,OsHSA1, OsFLN2, FLN2, HSA1/OsFLN2,OsRpo Tp, OsRpoTp, NEP, RpoTp, rpoTP2,v1, NUS1,OsV1, OsNUS1,rbcL, rbcA, OsrbcL,OsDVR,TRXZ, OsPAP10, PAP10, OsPAP10/OsTRXz, OsTRXz, TRXz, OsTrx25, Trx25,cab1R, LHCP, CAB, OsLhcb1, Lhcb1, Cab1, OsCAB1, Lhcb1b, OsLhcb1b, CAB2R,AOX1b, OsAOX1b,OsWRKY72, WRKY-72,OsWRKY24,FtsZ1, FtsZ, OsFtsZ1, OsFtsZ,PsaA, psaA, PsAA1, psaA1,PsbA, psbA, OsPsbA, PSBD1, OsPSBD1, psbD1
48701	32732944	Jain M., Aggarwal S., Nagar P., Tiwari R., Mustafiz A.	A D-lactate dehydrogenase from rice is involved in conferring tolerance to multiple abiotic stresses by maintaining cellular homeostasis.	Sci Rep	10(1)	12835	2020	BRD2,D-LDH ,D-LDH2	brd2, OsBRD2, Dim/dwf1, Dim, dwf1, OsDWF1, DWF1, LTBSG1, OsLTBSG1, LHDD10, OsLHDD10, OsD-LDH3, D-LDH3,OsD-LDH, OsD-LDH1, D-LDH1,OsD-LDH2, D2HGDH, OsD2HGDH
48702	32579349	Wang X., Yan X., Tian X., Zhang Z., Wu W., Shang J., Ouyang J., Yao W., Li S.	Glycine- and Proline-Rich Protein OsGPRP3 Regulates grain size and Quality in Rice.	J. Agric. Food Chem.	68(29)	7581-7590	2020	_	OsGRP1, GRP1, OsGPRP3, GPRP3 
48703	32723808	Yun-Feng Li, Xiao-Qin Zeng, LI Y., Wang L., Zhuang H., Wang Y., Tang J., Hong-Lei Wang, Xiong M., Fa-Yu Yang, Xiao-Zhen Yuan, Guang-Hua He	MULTI-FLORET SPIKELET 2, a MYB transcription factor, Determines spikelet meristem Fate and Floral Organ Identity in Rice.	Plant Physiol.			2020	MFS2	OsMFS2, MOF1, OsMOF1
48704	32680975	Ren D., Rao Y., Yu H., Xu Q., Cui Y., Xia S., Yu X., Liu H., Hu H., Xue D., Zeng D., Hu J., Zhang G., Gao Z., Zhu L., Zhang Q., Shen L., Guo L., Qian Q.	<i>MORE FLORET1</i> Encodes a MYB Transcription Factor That Regulates Spikelet Development in Rice.	Plant Physiol.	184(1)	251-265	2020	MFS2	OsMFS2, MOF1, OsMOF1
48705	32712772	X Liu, P H Cao, Q Q Huang, Y R Yang, D D Tao	Disruption of a Rice Chloroplast-Targeted Gene OsHMBPP Causes a Seedling-Lethal Albino Phenotype.	Rice (N Y)	13(1)	51	2020	LAS1,RPL2,MORF8,_,RPOB	HDR, OsHDR, OsIspH, IspH, OsHDR1, HDR1, OsLAS1, LAS1/OsHMBPP, OsHMBPP, HMBPP, OsIspH1, IspH1, YGL3, OsYGL3,rpl2,OsMORF8, OsMORF8b, MORF8b, OsMORF8-2, MORF8-2,atpA,rpoB, RpoB, Rpobeta
48706	32727356	Zhang Z., Liang X., Lu L., Xu Z., Huang J., He H., Peng X.	Two glyoxylate reductase isoforms are functionally redundant but required under high photorespiration conditions in rice.	BMC Plant Biol.	20(1)	357	2020	GLYR1,GLYR2	OsGLYR1, OsGR1, GR1,OsGLYR2, OsGR2, GR2
48707	32698774	Li C., Li N., Huang R., Chen C., Guo J., Yang X., Zhang X., Sun C., Deng X., Wang P.	A single nucleotide substitution at the 3'-end of SBPase gene involved in Calvin cycle severely affects plant growth and grain yield in rice.	BMC Plant Biol.	20(1)	345	2020	_,RBCS,_,ALDP	OsPrk, Prk,rbcS, OsRbcS, RBCS-C, RbcS2, OsRBCS2, RbcS1, OsRbcS2, OsrbcS1,FBPase, OsFBPase, OsSBPase, SBPase,Aldo, OsALDO, ALDO, FBAase, OsFBAase, ALDOA, OsALDOA 
48708	33020297	Baysal C., He W., Drapal M., Villorbina G., Medina V., Capell T., Khush G.S., Zhu C., Fraser P.D., Christou P.	Inactivation of rice starch branching enzyme IIb triggers broad and unexpected changes in metabolism by transcriptional reprogramming.	Proc. Natl. Acad. Sci. U.S.A.	117(42)	26503-26512	2020	PHS8,SSIVA,SSIIC,FLO5,GBSSII,SSI,AGPL2,PHO1,SBE4,SSIIIB,AGPS2,PUL,AGPL3,PHO2,AGPS1,SSIIB,AGPL1,ISA2,ISA3,SSIVB,SBE3,WX1,ALK,SBE1	ISA1, OsISA1, ISA, OsISA, PHS8/ISA1, OsPHS8, ISA I, OsISA I, ISAI, OsISAI,OsSSIVa, SSIV-1, OsSSIV-1,OsSSIIc, SSII-1, SSII1 ,OsSSIIIa, SSIII-2, OsSSIII-2, OsSS3A, SS3A, SS3a, OsSSSIIIa, SSIIIa, Flo5,GBSS2, OsGBSSII, OsGBSS2,OsSSI, SSS 1, SSS1, SS1, OsSS1, SSSI, OsSSSI,OsAGPL2, osagpl2, APL2, OsAPL2, AGPiso, sh2, Sh2, GIF2, GAS1 ,Pho1, OsPho1, OsPHOL, PHOL, OsPHOI, PHOI,RBE4, OsSBE4, BEIIa, QEIIb, BEIIA, OsBEIIa,OsSSIIIb. SSIII-1, SSIIIa,OsAGPS2a, AGPS2A, AGPS2B, OsAGPS2, osagps2, APS2, APS2a, APS2b, AGPS2a, APGS2b, OsAGPS2b, AGPP, GAS8, OsAPS2, OsAPS2a, OsAPS2b,OsPUL, SDBE, OsPUL3, RE,OsAGPL3, APL3, OsAPL3, AGPlar, OsAGPL1, AGPL1,Pho2, OsPho2, OsPHOH, PHOH,OsAGPS1, APS1, OsAPS1, AGPsma,OsSSIIb, OsSSII-2, SSII-2, SS2, OsSSSIIb, SS2b,OsAGPL1, OsAPL1, APL1, OsAGPL3, AGPL3, OsAGPSL3, AGPSL3,OsISA2, ISA II, OsISA II,OsISA3,OsSSIVb, SSIV-2, OsSSIV-2, SSIVb, SSIV-2, SSIV2, OsSSIV2,SBEIII*, SBEIII, Sbe3, RBE3, QEIIa, QEIIA, BEIIb, BEIIB, SBEIIb, OsBEIIb, sbe3, SBE III, OsSBEIIb, SBEIIb,wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx,alk, SSII-3, OsSSIIa, OsSSII-3, SSIIa, SSS2A, OsSSIIaChr6, SS2a,sbe1, Rbe1. Sbe1, sbe1*(QEI), RBE1, BEI, SBE I, QEI, OsBEI, BE1, OsSBE1, OsSBEI, SBEI
48709	33020276	Chen J., Lu L., Robb S.M.C., Collin M., Okumoto Y., Stajich J.E., Wessler S.R.	Genomic diversity generated by a transposable element burst in a rice recombinant inbred population.	Proc. Natl. Acad. Sci. U.S.A.	117(42)	26288-26297	2020		
48710	33093144	Li H., Kim Y.J., Yang L., Liu Z., Zhang J., Shi H., Huang G., Persson S., Zhang D., Liang W.	Grass-Specific <i>EPAD1</i> Is Essential for pollen Exine Patterning in Rice.	Plant Cell	32(12)	3961-3977	2020	EPAD1	AGP, OsAGP, OsEPAD1
48711	33091779	Sinha K., Kaur R., Singh N., Kaur S., Rishi V., Bhunia R.K.	Mobilization of storage lipid reserve and expression analysis of lipase and lipoxygenase genes in rice (Oryza sativa var. Pusa Basmati 1) bran during germination.	Phytochemistry	180	112538	2020		
48712	33049157	Wu J., Liu H., Lu S., Hua J., Zou B.	Identification and expression analysis of chloroplast ribonucleoproteins (cpRNPs) in Arabidopsis and rice.	Genome			2020		
48713	33033229	Hong S.Y., Sun B., Straub D., Blaakmeer A., Mineri L., Koch J., Brinch-Pedersen H., Holme I.B., Burow M., Lyngs J?rgensen HJ., Alb? MM., Wenkel S.	Heterologous microProtein expression identifies LITTLE NINJA, a dominant regulator of jasmonic acid signaling.	Proc. Natl. Acad. Sci. U.S.A.	117(42)	26197-26205	2020		
48714	32881160	Ji H., Liu D., Zhang Z., Sun J., Han B., Li Z.	A bacterial F-box effector suppresses SAR immunity through mediating the proteasomal degradation of OsTrxh2 in rice.	Plant J.	104(4)	1054-1072	2020	OSK1,NH1,TRXH2	SKP1, OsSKP1,OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2, DLN5, OsDLN5,  OsBTBA1, BTBA1,OsTRXh2, Os2, OsTrxh2
48715	33163736	Waziri A., Singh D.K., Sharma T., Chatterjee S., Purty R.S.	Genome-wide analysis of PHD finger gene family and identification of potential miRNA and their PHD finger gene specific targets in <i>Oryza sativa</i> indica.	Noncoding RNA Res	5(4)	191-200	2020	RFS,EHD3,HAZ1,PHD33,PHD29,PHD24,PHD40,PHD1,PHD3,PHD21,DLN3,PHD9,PHD16,PHD10,PHD27,PHD18,PHD20,PHD26,PHD25,PHD31,ZBED,PHD42,PHD41,HIRP1,SHL2,SIZ1,DLN198,SHL1,DLN83,EBL1,PHD39,EBL2,_,DLN258,PHD13,PHD11,TIP3,PHD6,_,PHD5,PHD43,PHD19,PHD35,PHD22	rfs, cul7, OsRFS, OsCHR729, CHR729, CHR4, OsCHR4, CRL6, OsCRL, OsCHR4/CHR729, PKR1, OsPHD32, PHD32,Ehd3, OsPHD36, PHD36,OsHAZ1, OsPHD28, PHD28,OsPHD33, OsAL7.1, AL7.1, OsAL7, AL7,OsRFP, OsPHD29,  OsRING12, RING12,OsPHD24, OsAL5.2, AL5.2, OsAL6, AL6,OsPHD40, OsAL11, AL11, OsAL9, AL9,OsPHD1, OsAL1.2, AL1.2, OsAL1, AL1,OsPHD3,OsPHD21, OsAL4, AL4,OsDLN3, OsPHD4, PHD4,OsPHD9, OsAL2, AL2,OsPHD16,OsPHD10,OsPHD27,OsPHD18,OsPHD20,OsPHD26,OsPHD25,OsPHD31,OsZBED, OsPHD2, PHD2,OsPHD42,OsPHD41,OsRFP, OsHIRP1, DLN82, OsDLN82, OsPHD14, PHD14,  OsRING365, RING365,OsSHL2, OsPHD17, PHD17,OsSIZ1, OsSIZ1.1, OsSIZ1.2, OsSIZ1.3, DLN131, OsDLN131, OsPHD23, PHD23,OsRFP, OsDLN198, OsPHD30, PHD30,  OsRING82, RING82,OsSHL1, OsPHD34, PHD34,OsDLN83, OsPHD15, PHD15,qSSR8, OsEBL1, ES43, OsPHD37, PHD37,OsPHD39,OsEBL2, OsPHD38, PHD38,OsSET7, SDG730, OsPHD8, PHD8,OsDLN258, OsPHD44, PHD44,OsPHD13,OsPHD11,OsTIP3, OsPHD12, PHD12,OsPHD6,OsSET6, SDG720, OsPHD7, PHD7,OsPHD5,OsPHD43,  OsRING426, RING426,OsPHD19,OsPHD35, OsAL7.2, AL7.2, OsAL8, AL8,OsPHD22, OsAL5.1, AL5.1, OsAL5, AL5
48716	33268928	To H.T.M., Le K.Q., Van Nguyen H., Duong L.V., Kieu H.T., Chu Q.A.T., Tran T.P., Mai N.T.P.	A genome-wide association study reveals the quantitative trait locus and candidate genes that regulate phosphate efficiency in a Vietnamese rice collection.	Physiol Mol Biol Plants	26(11)	2267-2281	2020	PP113,CML15,SAPK2,PM1	OsPP113,OsCML15,OsSAPK2, OsSnRK2.2, SnRK2.2,AWPM-19, PM19, OsPM1, OsPM-1, OsPM19L1, PM19L1, OsAWPM-19, OsPM19
48717	33095869	Tripathi D.K., Rai P., Guerriero G., Sharma S., Corpas F.J., Singh V.P.	Silicon induces adventitious root formation in rice (Oryza sativa L.) under arsenate stress with the involvement of nitric oxide and indole-3-acetic acid.	J. Exp. Bot.			2020	LSI2,PIN5A,PIN1A,YUCCA1,DHAR1,CDC2-1,NOA1,FIB,MDHAR1,LSI1,PIN10A	Lsi2, SIET1, OsLsi2, OsSIET1,OsPIN5a, OsPIN6,PIN1C, OsPIN1C, OsPIN1c, OsPIN1a,OsYUCCA1, OsYUC1, YUC1,OsDHAR1, DHAR, cytDHAR, OscytDHAR, OsDHAR,cdc2Os-1, CDC2Os-1, CDKA-1, CDKA;1, Orysa;CDKA;1, OsCDKA;1, cdc2Os1, Rcdc2-1, OsCDKA1, CDKA1, CDC20S-1, OsCDC20S-1 ,OsNOA1,fib, OsFIB, OsTAR2, TAR2, TSG1, OsTSG1, OsTAA1, TAA1,OsMDAR1, MDAR1, OsMDHAR1, OsMDHAR4-1, MDHAR4-1,lsi1, NIP2-1, OsNIP2;1, NIP2;1, OsLsi1, lsi(t), OsNIP2.1/OsLsi1/OsSIIT1, OsNIP2.1, NIP2.1,PIN3A, OsPIN3a, OsPIN3t, OsPIN10a, OsPIN3
48718	33025522	Fang J.C., Tsai Y.C., Chou W.L., Liu H.Y., Chang C.C., Wu S.J., Lu C.A.	A CCR4-associated factor 1, OsCAF1B, confers tolerance of low-temperature stress to rice seedlings.	Plant Mol. Biol.	105(1-2)	177-192	2021	TPP1,TPP2,GR3,WRKY77,GAD3,MYBS3,MDR7,CAF1-5,_,_,GS1 	OsTPP1, OsTPS, TPP,OsTPP2,OsGR3,OsWRKY77, WRKY-77,OsGAD3,OsMYBS3,MDR4, OsABCB5, ABCB5, OsPGP5, OsMDR7, OsISC28, MRP4, OsMRP4, OsABCB11, ABCB11, MR7, OsMR7,OsCAF1B, CAF1B, OsCAF1-5,WZF1, OsWZF1, DLN99, OsDLN99, OsZFP1, ZFP1,OsMYB4, Osmyb4, OsMyb4, MYB4, OsMYB55, MYB55, OsMyb8, MYB8, OsMYB13b, MYB13b, OsMYB15, MYB15, Os2R_MYB46, 2R_MYB46,OsGS1, OsGS2, OsGSH2
48719	33113937	Usman B., Nawaz G., Zhao N., Liao S., Liu Y., Li R.	Precise Editing of the <i>OsPYL9</i> Gene by RNA-Guided Cas9 Nuclease Confers Enhanced drought tolerance and grain yield in Rice (<i>Oryza sativa</i> L.) by Regulating Circadian Rhythm and Abiotic Stress Responsive Proteins.	Int J Mol Sci	21(21)		2020	PYL/RCAR9	OsPYL/RCAR9, PYL9, OsPYL9, OsPYL2, PYL2
48720	33064214	Lim S.D., Oh D.G., Park Y.C., Jang C.S.	Molecular characterization of a RING E3 ligase SbHCI1 in sorghum under heat and abscisic acid stress.	Planta	252(5)	89	2020		
48721	33001260	Islam A., Zhang Y., Anis G., Rani M.H., Anley W., Yang Q., Liu L., Shen X., Cao L., Cheng S., Wu W.	Fine mapping and candidate gene analysis of qRN5a, a novel QTL promoting root number in rice under low potassium.	Theor. Appl. Genet.			2020	HAK5,IAA23,LBD5-3	OsHAK5, FCO13, OsFCO13,OsIAA23,OsLBD5-3
48722	33080797	Sade N., Weng F., Tajima H., Zeron Y., Zhang L., Rubio Wilhelmi MDM., Day G., Peleg Z., Blumwald E.	A Cytoplasmic Receptor-like Kinase Contributes to Salinity Tolerance.	Plants (Basel)	9(10)		2020	RLCK311,PIP2A	OsRLCK311,OsPIP2a, PIP2-1, PIP2a, PIP2.1, OsPIP2;1, PIP2;1, OsPIP2-1
48723	33060675	Suriyasak C., Oyama Y., Ishida T., Mashiguchi K., Yamaguchi S., Hamaoka N., Iwaya-Inoue M., Ishibashi Y.	Mechanism of delayed seed germination caused by high temperature during grain filling in rice (Oryza sativa L.).	Sci Rep	10(1)	17378	2020	NCED3,NCED1,ABA8OX1,ABA8OX3,AMY3E,NCED2,ABA8OX2,AMY3C	OSNCED3, OsNCED-3, OsNCED3, OsNCED3a, NCED3a, OsNCED4, NCED4, OsNECD2, OsNCED2b, NCED2b ,OSNCED1, OsNCED-1, OsNCED3, OsNced3, NCED3, OsNCED9, NCED9,OsABA8OX1, CYP707A5, OsCYP707A5, ABA8ox1, OsABA8ox1, OsABA8'OH1, ABA8'OH1 ,OsABA8OX3, OsABA8ox3, CYP707A7, OsCYP707A7, OsAba-ox3, OsABA8ox3, OsABA8'ox3, ABA8'ox3, OsABAX3, ABAX3, OsABA8'OH3, ABA8'OH3,Amy3D/E*(RAmy3D/E), alpha Amy8, alphaAmy8, AmyII-3, AMY1.4, Amy3E, Amy3D/E*, RAmy3D/E, Amy9, RAmy3E, alphaAmy8-C, AMY3E/AMY1.4, OsAmy3E, OsRamy3E,OSNCED2, OsNCED2, OsNCED5, NCED5,OsABA8OX2, OsABA8ox2, CYP707A6, OsCYP707A6, OsAba-ox2, OsABA8ox2, OsABA8OH2, ABA8OH2, ABA8'-OH2, OsABA8'ox2, ABA8'ox2, OsABAX2, ABAX2, OsABA8'OH2, ABA8'OH2,Amy3A/B/C*(RAmy3A/B/C), AmyII-6, AMY1.7, Amy3C, RAmy3A/B/C, Amy3A/B/C*, Amy7, AMY3B, RAmy3C, OsAmy3B
48724	32697299	Mujiono K., Tohi T., Sobhy I.S., Hojo Y., Ho N.T., Shinya T., Galis I.	Ethylene functions as a suppressor of volatile production in rice.	J. Exp. Bot.	71(20)	6491-6511	2020		
48725	33079323	Kim J.H., Jang C.S.	E3 ligase, the Oryza sativa salt-induced RING finger protein 4 (OsSIRP4), negatively regulates salt stress responses via degradation of the OsPEX11-1 protein.	Plant Mol. Biol.			2020	PEX11-1,SIRP4	OsPEX11-1, OsPEX11,OsSIRP4,  OsRING8, RING8
48726	33097183	Son S., Kim H., Lee K.S., Kim S., Park S.R.	Rice glutaredoxin GRXS15 confers broad-spectrum resistance to Xanthomonas oryzae pv. oryzae and Fusarium fujikuroi.	Biochem. Biophys. Res. Commun.	533(4)	1385-1392	2020	WRKY65	OsWRKY65
48727	33122772	Verma A., Niranjana M., Jha S.K., Mallick N., Agarwal P., Vinod	QTL detection and putative candidate gene prediction for leaf rolling under moisture stress condition in wheat.	Sci Rep	10(1)	18696	2020		
48728	33108367	Chang S., Chen Y., Jia S., Li Y., Liu K., Lin Z., Wang H., Chu Z., Liu J., Xi C., Zhao H., Han S., Wang Y.	Auxin apical dominance governed by the OsAsp1-OsTIF1 complex determines distinctive rice caryopses development on different branches.	PLoS Genet.	16(10)	e1009157	2020	FIB,KRP1,YUCCA1,CYCB1;1,TIF2,ASP1,TIF1,TAD1,FST 	fib, OsFIB, OsTAR2, TAR2, TSG1, OsTSG1, OsTAA1, TAA1,OsiICK1, Orysa;KRP1, OrysaICK1, Orysa;ICK1, CDKI, OsICK1, ICK1, OsKRP1,OsYUCCA1, OsYUC1, YUC1,CycB1;1, CycB1;os;1, Orysa;CycB1;1, OsCycB1;1, CyclaZm, CYCIaZm, OsCYCIaZm, OsCYCB1;4,OsTIF2,OsAsp1,OsTIF1,TAD1, OsCCS52A, TE, OsWD40-61, TAD1/TE, CCS52A1 ,  OsCCS52A1/TE/TAD1, CCS52A1/TE/TAD1, OsCDH1A, CDH1A,OsMADS29, MADS29, OsFST
48729	33128314	He Q., Lu H., Guo H., Wang Y., Zhao P., Li Y., Wang F., Xu J., Mo X., Mao C.	OsbHLH6 interacts with OsSPX4 and regulates the phosphate starvation response in rice.	Plant J.			2020	SPX4,SPX2,PAP21B,PT3,PT2,PAP10A,PHR2,BHLH6,IPS1,PT9,PT10	OsSPX4, Os-SPX4,OsSPX2,OsPAP21b,OsPT3, PHT1-3, OsPht1;3, OjPT1, PHT1;3,OsPT2, PTH1-2, OsPht1;2, PHT1;2, OsPHT1;2,OsPAP10a, PAP10, OsPAP2, PAP2,OsPHR2, Os-PHR2,OsbHLH006, bHLH006, OsbHLH6, bHLH6, RERJ1, OsRERJ1, bHLH35,OsIPS1,OsPT9, PHT1-9, OsPht1;9,OsPT10, PHT1-10, OsPht1;10
48730	33089420	Bhunia R.K., Sinha K., Chawla K., Randhawa V., Sharma T.R.	Functional characterization of two type-1 diacylglycerol acyltransferase (DGAT1) genes from rice (Oryza sativa) embryo restoring the triacylglycerol accumulation in yeast.	Plant Mol. Biol.			2020	DGAT1-1,DGAT1-2	OsDGAT, DGAT, OsDGAT1-1,OsDGAT1-2
48731	33121183	Liu Y.H., Jiang M., Li R.Q., Basnet R., Huang J.Z., Song S.Y., Shu Q.Y.	Identification, Characterization, and Mutational Analysis of a Probable KEAP1 Ortholog in Rice (<i>Oryza sativa</i> L.).	Plants (Basel)	9(11)		2020	CATB,CATA,NRP4,KEAP1	CatB, CAT-B, OsCatB, OsCATB, OsCAT1B, CAT1B, CAT2, OsCAT2,CATA1, Cat A1*, OSCAT-A, Cat2, CatA1, CAT-A, OsCatA, OsCAT, CAT, catA, OSCATA, OsCATc, OsCATA, OsCAT1A, CAT1, OsCAT1, OsCATC, OsCAT2,OsNRP4,OsKEAP1
48732	33094397	Carrillo-Bermejo EA., Gamboa-Tuz SD., Pereira-Santana A., Keb-Llanes MA., Casta?o E., Figueroa-Ya?ez LJ., Rodriguez-Zapata LC.	The SoNAP gene from sugarcane (Saccharum officinarum) encodes a senescence-associated NAC transcription factor involved in response to osmotic and salt stress.	J. Plant Res.	133(6)	897-909	2020		
48733	33025523	Bhattacharjee A., Srivastava P.L., Nath O., Jain M.	Genome-wide discovery of OsHOX24-binding sites and regulation of desiccation stress response in rice.	Plant Mol. Biol.	105(1-2)	205-214	2021	_,POLLUX,ACX2,HOX24,HADL,NLA1,RBBI3-2,_,_,_	,OsPOLLUX, Os-POLLUX, DMI1, OsDMI1,OsACX2,Oshox24, OsHox24, OsSLI1, OsHDZ6, OsHDZIP6, HDZ6, HDZIP6,OsHADL, OsHAD3, HAD3,OsRFPHC-13, OsNLA, NLA, OsNLA1, OsNLA1.1, OsNLA1.2, OsNLA1.3,  OsRING269, RING269,OsRBBI3-2, BBTI3, OsBBTI3,,,
48734	33288030	Nair A., Pillai V.S., Chittela R.K.	Characterization of the N- terminal domain of MRE11 protein from rice (OsMre11) Oryza sativa.	Plant Sci.	302	110730	2021		
48735	33031564	Dang X., Yang Y., Zhang Y., Chen X., Fan Z., Liu Q., Ji J., Li D., Li Y., Fang B., Wu Z., Liu E., Hu X., Zhu S., She D., Wang H., Li Y., Chen S., Wu Y., Hong D.	OsSYL2AA , an allele identified by gene-based association, increases style length in rice (Oryza sativa L.).	Plant J.	104(6)	1491-1503	2020	LK3,SYL2	lk3(t), lk3(t)*, SG3, GS3, SG3-GS3, OsGW3, OsGS3, RGG3/GS3/Mi/OsGGC1, RGG3, Mi, OsGGC1, GGC1, OsSYL3, SYL3, TT2, OsTT2,OsSYL2
48736	33119889	Wang Y., Wang Y., Ren Y., Duan E., Zhu X., Hao Y., Zhu J., Chen R., Lei J., Teng X., Zhang Y., Wang D., Zhang X., Guo X., Jiang L., Liu S., Tian Y., Liu X., Chen L., Wang H., Wan J.	white panicle2 encoding thioredoxin z, regulates plastid RNA editing by interacting with multiple organellar RNA editing factors in rice.	New Phytol.			2020	WP2,MORF8,HSA1,WSP1,WLP2,MORF9	TRXZ, OsPAP10, PAP10, OsPAP10/OsTRXz, OsTRXz, TRXz, OsTrx25, Trx25,OsMORF8, OsMORF8b, MORF8b, OsMORF8-2, MORF8-2,OsHSA1, OsFLN2, FLN2, HSA1/OsFLN2,OsWSP1, OsMORF2b, MORF2b, OsMORF2, OsMORF2/WSP1,OsWLP2, OsFLN1, FLN1, HSA2,OsMORF9
48737	33063229	Li P., Li H., Liu Z., Zhuang Y., Wei M., Gu Y., Liu Y., Sun X., Tang Y., Yue L., Lu L., Luo D., Huang W., Tu S., Wang S.	Characterization of the 'Oat-like rice' Caused by a Novel Allele OsMADS1Olr Reveals Vital Importance of OsMADS1 in Regulating grain shape in Oryza sativa L.	Rice (N Y)	13(1)	73	2020	BU1,GGC2,GW8,RGB1,DEP1,GS5,BHLH081,LHS1,GW2,LK3	ILI4, OsILI4 , OsBU1, BU1/ILI4, OsbHLH172, bHLH172,OsGGC2,SPL16, OsSPL16, SLP1, OsSLP1, qGW8, OsGW8,OsWD40-80, RGbeta1, OsRGB1,  OsDWD38, DWD38,OsDEP1, EP, qPE9-1, DN1, DEP1/DN1/qPE9-1, qNGR9, qDEP1, RGG4/DEP1/DN1/qPE9-1/OsGGC3, RGG4, OsDN1, OsGGC3, GGC3,OsSCP26, SCP26, OsGS5,OsbHLH081, bHLH081, OsBC1, BC1,OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO, OsLHS1, OsLG3b, LG3b, qLGY3, LGY3, DLN80, OsDLN80, OLR, OsOLR, GW3p6, OsGW3p6, OsMADS1GW3p6, MADS1GW3p6, qLGY3/OsLG3b/GW3p6,OsGW2, OsRING429, RING429, GNL44, OsGNL44,lk3(t), lk3(t)*, SG3, GS3, SG3-GS3, OsGW3, OsGS3, RGG3/GS3/Mi/OsGGC1, RGG3, Mi, OsGGC1, GGC1, OsSYL3, SYL3, TT2, OsTT2
48738	33288022	Ortolan F., Fonini L.S., Pastori T., Mariath J.E.A., Saibo N.J.M., Margis-Pinheiro M., Lazzarotto F.	Tightly controlled expression of OsbHLH35 is critical for anther development in rice.	Plant Sci.	302	110716	2021		
48739	33288002	Zhang L., Zhang F., Liu F., Shen J., Wang J., Jiang M., Zhang D., Yang P., Chen Y., Song S.	The lotus NnFTIP1 and NnFT1 regulate flowering time in Arabidopsis.	Plant Sci.	302	110677	2021		
48740	33058471	Xiong X., Liang J., Li Z., Gong B.Q., Li J.F.	Multiplex and optimization of dCas9-TV-mediated gene activation in plants.	J Integr Plant Biol			2020		
48741	33099790	Li W., Wang L., Zhou F., Li C., Ma W., Chen H., Wang G., Pickett J.A., Zhou J.J., Lin Y.	Overexpression of the homoterpene synthase gene, OsCYP92C21, increases emissions of volatiles mediating tritrophic interactions in rice.	Plant Cell Environ.			2020	CYP92A11,CYP89B1,CYP92C21,CYP71C16,CYP92A9,CYP71AK2	OsCYP92A11,OsCYP89B1,OsCYP92C21, OsCYP71AB7, CYP71AB7,OsCYP71C16, OsCYP71C7, CYP71C7,OsCYP92A9, OsCYP71W6, CYP71W6,OsCYP71AK2, OsCYP71AK, CYP71AK
48742	32941625	Nishimura K., Yamada R., Hagihara S., Iwasaki R., Uchida N., Kamura T., Takahashi K., Torii K.U., Fukagawa T.	A super-sensitive auxin-inducible degron system with an engineered auxin-TIR1 pair.	Nucleic Acids Res.	48(18)	e108	2020		
48743	33068118	Chan A.N., Wang L.L., Zhu Y.J., Fan Y.Y., Zhuang J.Y., Zhang Z.H.	Identification through fine mapping and verification using CRISPR/Cas9-targeted mutagenesis for a minor QTL controlling grain weight in rice.	Theor. Appl. Genet.			2020	VQ4	OsVQ4
48744	33050881	Baidyussen A., Aldammas M., Kurishbayev A., Myrzabaeva M., Zhubatkanov A., Sereda G., Porkhun R., Sereda S., Jatayev S., Langridge P., Schramm C., Jenkins C.L.D., Soole K.L., Shavrukov Y.	Identification, gene expression and genetic polymorphism of Zinc finger A20/AN1 stress-associated genes, HvSAP, in salt stressed barley from Kazakhstan.	BMC Plant Biol.	20(Suppl 1)	156	2020		
48745	32725154	Zheng X., Liu C., Qiao L., Zhao J., Han R., Wang X., Ge C., Zhang W., Zhang S., Qiao L., Zheng J., Hao C.	The MYB transcription factor TaPHR3-A1 is involved in phosphate signaling and governs yield-related traits in bread wheat.	J. Exp. Bot.	71(19)	5808-5822	2020		
48746	33051057	Son S., An H.K., Seol Y.J., Park S.R., Im J.H.	Rice transcription factor WRKY114 directly regulates the expression of OsPR1a and Chitinase to enhance resistance against Xanthomonas oryzae pv. oryzae.	Biochem. Biophys. Res. Commun.	533(4)	1262-1268	2020	WRKY114	OsWRKY114
48747	32955089	Cheung M.Y., Ngo J.C., Chen Z., Jia Q., Li T., Gou Y., Wang Y., Lam H.M.	A structure model explaining the binding between a ubiquitous unconventional G-protein (OsYchF1) and a plant-specific C2-domain protein (OsGAP1) from rice.	Biochem. J.	477(20)	3935-3949	2020		
48748	33062051	Nguyen D.T., Gomez L.D., Harper A., Halpin C., Waugh R., Simister R., Whitehead C., Oakey H., Nguyen H.T., Nguyen T.V., Duong T.X., McQueen-Mason SJ.	Association mapping identifies quantitative trait loci (QTL) for digestibility in rice straw.	Biotechnol Biofuels	13	165	2020		
48749	32586913	He Y., Hong G., Zhang H., Tan X., Li L., Kong Y., Sang T., Xie K., Wei J., Li J., Yan F., Wang P., Tong H., Chu C., Chen J., Sun Z.	The OsGSK2 Kinase Integrates Brassinosteroid and Jasmonic Acid Signaling by Interacting with OsJAZ4.	Plant Cell	32(9)	2806-2822	2020	TIFY11C,BIN2,_,TIFY6B	OsJAZ2, JAZ2, OsJAZ 11, OsJAZ11, Os-JAZ11, JAZ11, OsTIFY11c, OsJAZ1, JAZ1,GSK2, Os GSK2, OsGSK2, Os BIN2, OsBIN2, BIN2/GSK2, OsSK22/OsGSK7, OsSK22, OsGSK7, SK22, GSK7, OsSK22/GSK2 ,OsNINJA1, NINJA1, OsNINJA2, OsNINJA, NINJA,OsJAZ8, JAZ8, OsJAZ 4, OsJAZ4, JAZ4, OsTIFY6b, OsJAZ4-2, JAZ4-2. OsJAZ3, JAZ3
48750	32883712	Strable J.	Gains in Grain Yield: A Pair of Spikelets Makes All the Difference, Even When One Is Sterile.	Plant Cell	32(11)	3378-3379	2020		
48751	32938753	Wang J., Nan N., Li N., Liu Y., Wang T.J., Hwang I., Liu B., Xu Z.Y.	A DNA Methylation Reader-Chaperone Regulator-Transcription Factor Complex Activates <i>OsHKT1;5</i> Expression during Salinity Stress.	Plant Cell	32(11)	3535-3558	2020	BAG4,MYB106,SKC1,SUVH7	OsBAG4, EIP1, OsEIP1,OsMYB106, Os2R_MYB77, 2R_MYB77,OsHKT8, HKT8, Os-HKT1;5, OsHKT1;5, HKT1;5, SKC1, qSKC-1(t), OsSKC1,OsSET4, SET4, SDG709, OsSDG709, OsSUVH7
48752	33092991	Wang J., Yan L.L., Yue Z.L., Li H.Y., Ji X.J., Pu C.X., Sun Y.	Receptor-like kinase OsCR4 controls leaf morphogenesis and embryogenesis by fixing the distribution of auxin in rice.	J Genet Genomics			2020		
48753	32913047	Hu Y., Li S., Fan X., Song S., Zhou X., Weng X., Xiao J., Li X., Xiong L., You A., Xing Y.	<i>OsHOX1</i> and <i>OsHOX28</i> Redundantly Shape Rice tiller angle by Reducing <i>HSFA2D</i> Expression and Auxin Content.	Plant Physiol.	184(3)	1424-1437	2020	WOX11,YUCCA5,YUCCA6,YUCCA7,IAA20,WOX6,YUCCA1,HOX28,HOX1,LA1,HSFA2D	OsWOX11, Os WOX11, OsWOX12A,OsYUCCA5, OsYUC5, YUC5,OsYUCCA6, OsYUC6, YUC6,OsYUCCA7, OsYUC7, OsYUC5, YUC5, YUC7,OsIAA20,OsWOX6, Os WOX6, OsWOX12B, WOX12B,OsYUCCA1, OsYUC1, YUC1,Oshox28, OsHox28, OsHDZ18, OsHDZIP18, HDZ18, HDZIP18,Oshox1, OsHox1, OsHDZ38, OsHDZIP38, HDZ38, HDZIP38,OsLa1,HSfA2d, OsHsfA2d, OsHsf-08, rHsf7, HSF08, OsHSF8, HSF8, HSF7, OsHSF7, OsHSFA2dI, OsHSFA2dII, OsHSFA2dIII, OsHsfA6b, HsfA6b, OsHsf2d, Hsf2d
48754	32929552	Takebe N., Nakamura A., Watanabe T., Miyashita A., Satoh S., Iwai H.	Cell wall Glycine-rich Protein2 is involved in tapetal differentiation and pollen maturation.	J. Plant Res.	133(6)	883-895	2020	_	GRP, Osgrp-2, OsGRP-2, GRCWP, OsGRP2, GRP2
48755	32924751	Verma R.K., Kumar V.V.S., Yadav S.K., Kumar T.S., Rao M.V., Chinnusamy V.	Overexpression of Arabidopsis <i>ICE1</i> enhances yield and multiple abiotic stress tolerance in indica rice.	Plant Signal Behav	15(11)	1814547	2020	BHLH54,CKX4,BHLH53,TPP1,DREB1B,BHLH2,DREB1F,SCR1,MYB3R2,EREBP1,DREB1A,BHLH55	OsbHLH054, bHLH054, bHLH54, OsSPCH1, SPCH1, SPCH,OsCKX4, ckx4, OsSCRM, OsSCRM2, SCRM, SCRM2,OsbHLH053, bHLH053, bHLH53, OsSPCH2, SPCH2,OsTPP1, OsTPS, TPP,OsDREB1B, ERF31, OsERF031, OsERF#031, OsERF31, AP2/EREBP#169, AP2/EREBP169, OsDREB1b, OsDREB1C, OsCBF1, CBF1,OsbHLH002, bHLH002, OsbHLH2, bHLH2, OsICE1, ICE1, OsbHLH002/OsICE1,OsERF#027, OsERF027, OsERF27, ERF27, AP2/EREBP#081, AP2/EREBP81, OsDREB1F,OsSCR1, OsSCR, OsGRAS-41, OsGRAS41, GRAS-41, GRAS41,OsMYB3R-2, OsMYB3R2, OsMSL07, MSL07, MSL7, DLN28, OsDLN28,OsEREBP1, OsERF#070, OsERF070, OsERF70, ERF70, AP2/EREBP#084, AP2/EREBP84,OsDREB1A, Os DREB1A, CBF3, OsCBF3, OsDREB1A/OsCBF3, ERF24, OsERF24, OsERF024, OsERF#024, AP2/EREBP#114, AP2/EREBP114, OsDREBL,OsbHLH055, bHLH055, bHLH55, OsMUTE, MUTE
48756	32898938	Jiang L., Lu Y., Zheng X., Yang X., Chen Y., Zhang T., Zhao X., Wang S., Zhao X., Song X., Zhang X., Peng J., Zheng H., Lin L., MacFarlane S., Liu Y., Chen J., Yan F.	The plant protein NbP3IP directs degradation of Rice stripe virus p3 silencing suppressor protein to limit virus infection through interaction with the autophagy-related protein NbATG8.	New Phytol.			2020	ATG8B,P3IP	OsATG8b, Atg8b,OsP3IP
48757	32986735	Chen L., Guo H., Chen S., Yang H., Ghouri F., Shahid M.Q.	Comparative study on cytogenetics and transcriptome between diploid and autotetraploid rice hybrids harboring double neutral genes.	PLoS ONE	15(9)	e0239377	2020	SA,SB,MSP1,_,_	Sa*, S-a, Hst16,Sb*, S-b, Hst17, S24, F5-Du,Msp1, OsMSP1, OsTMS15, TMS15,OsFbox191, Os_F0109,  OsFBD10, FBD10,OSK17
48758	32928899	Zhang J., Guo Y., Fang Q., Zhu Y., Zhang Y., Liu X., Lin Y., Barkan A., Zhou F.	The PPR-SMR protein ATP4 Is Required for Editing the Chloroplast <i>rps8</i> mRNA in Rice and Maize.	Plant Physiol.	184(4)	2011-2021	2020	PPR676,RPS8,RPL14,RPL16	OsPPR676, OsATP4, ATP4,rps8,rpl14,rpl16
48759	32888212	Jin J., Guo Z.H., Hao Q., Chye M.L.	Crystal structure of the rice acyl-CoA-binding protein OsACBP2 in complex with C18:3-CoA reveals a novel pattern of binding to acyl-CoA esters.	FEBS Lett.	594(21)	3568-3575	2020	ACBP2	OsACBP2
48760	32889758	Zhang J., Fan X., Hu Y., Zhou X., He Q., Liang L., Xing Y.	Global analysis of CCT family knockout mutants identifies four genes involved in regulating heading date in rice.	J Integr Plant Biol			2020	CO3,COL4,BBX3,DTH2,GATA20,BBX7,HD2,BBX23,BBX10,CCT36,BBX15,BBX20,COL15,CCT1,CCT17,PRR59,GATA19,CCT25,GATA18 ,BBX17,SE1,CMF3,BBX9,GATA17,CMF11,PRR73,BBX25,BBX28,GHD7,PRR95,DHD4,TOC1,CCT37,NRR,BBX8,CCT10,CMF14,BBX12	OsB, OsCO3, OsBBX27, OsCO3/OsB, OsCCT31, CO3, BBX27, CCT31,OsCOL4, OsD, OsBBX5, OsCOL4/OsD, OsCCT06, BBX5, CCT06,OsBBX3, OsF, OsCCT05, CCT05,OsBBX19, BBX19, OsM, OsDTH2, qDTH-2, OsCCT22, CCT22,OsTIFY2b, TIFY2B, OsCCT24, CCT24, OsGATA20,OsN, OsBBX7, OsCCT08, OsCCT8, OsDTH2, CCT08, CCT8, DTH2,Hd2(t), Hd2, qHD2(t), OsPRR37, Os-PRR37, PRR37, Prr4, OsPRR4, DTH7, Os DTH7, OsCCT28, CCT28, Ghd7.1, PRR37/Hd2, EH7-2, EH7-2/Hd2, Hd2/PRR37, PRR37-1a, PRR37-1b, PRR37-1c, PRR37-2a, PRR37- 2, HD7.2,OsBBX23, OsCCT27, CCT27, OsR, OsCOL13, COL13,OsBBX10, OsJ, OsCCT14, OsCOL10, COL10, OsCOL9, CCT14, COL9,OsCCT36, OsCMF12, CMF12, OsRpp30, Rpp30,OsBBX15, OsCCT19, OsS, OsSTA162, CCT19, STA162,OsBBX20, OsE, OsCCT23, CCT23,OsBBX26, BBX26, OsO, OsCCT30, CCT30, OsCOL15, OsCOL15/OsBBX26, Hd1-3,OsCCT01, CCT01, OsCMF1,OsCCT17, OsCMF5, CMF5,OsPRR59, Os-PRR59, Prr5, OsPRR5, OsCCT38, CCT38,OsTIFY1b, TIFY1B, OsCCT15, CCT15, OsGATA19, OsGATA19a, OsGATA19b,OsCCT25, OsCMF7, CMF7,OsTIFY1A, TIFY1A, OsCCT13, OsGATA18, OsGATA18a, OsGATA18b,OsBBX17, OsL, OsCCT20, CCT20, OsCOL16, COL16,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, OsHd1,  Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,OsCCT03, CCT03, OsCCT3, CCT3, OsCMF3,OsP, OsBBX9, OsCCT12, CCT12,OsTIFY2a, TIFY2a, OsCCT04, OsCCT4, CCT04, CCT4, OsGATA17, OsGATA17a, OsGATA17b,OsCCT35, CCT35, OsCMF11, OsH, DLN240, OsDLN240,OsPRR73, Os-PRR73, Prr3, OsPRR3, OsRRA20, OsCCT11, CCT11,OsBBX25, OsG, OsCCT29, CCT29,OsBBX28, OsCCT32, OsQ, CCT32,Ghd2, Ghd7, OsGhd7, OsCCT26, OsCMF8, OsI, Ghd7/Hd4, Hd4, EH7-1/Hd4, Ghd7-0a, EH7-1, EH7/Ghd7, EH7, OsEH7, GLW7.1, OsGLW7.1,OsPRR95, Os-PRR95, Prr2, OsPRR2, OsCCT33,OsCCT02, OsCCT2, OsCMF2, OsSTA46, OsDHD4, CCT02, CCT2, CMF2, STA46,OsTOC1, OsPRR1, Os-PRR1, PRR1, OsRRA21, OsCCT07,OsCCT37,OsNRR, NRRa, NRRb, OsCCT18, OsCMF6,  CCT18, CMF6, CRCT, OsCRCT,OsBBX8, OsK, OsCCT09, OsGhd2, OsK/Ghd2, CCT09, Ghd2,OsCCT10, OsCMF4, CMF4, DLN75, OsDLN75,OsCCT41, CCT41, OsCMF14,OsBBX12, OsC, OsCCT16, CCT16
48761	32992695	Hou H., Fang J., Liang J., Diao Z., Wang W., Yang D., Li S., Tang D.	<i>OsExo70B1</i> Positively Regulates Disease Resistance to <i>Magnaporthe oryzae</i> in Rice.	Int J Mol Sci	21(19)		2020	EXO70B1,CERK1,_,PR10A	OsEXO70B1, OsExo70B1, OrysaB1_Exo70,OsCERK1, OsLysM-RLK9, Os-CERK1, Os-LysM-RLK9, OsLysMRLK9, OsCERK1/OsLYK9, OsLYK9, LYK9,TLP, PR5, OsTLP, OsPR5,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 
48762	32895423	Jan R., Khan M.A., Asaf S., Lee I.J., Kim K.M.	Overexpression of OsF3H modulates WBPH stress by alteration of phenylpropanoid pathway at a transcriptomic and metabolomic level in Oryza sativa.	Sci Rep	10(1)	14685	2020	2ODD15,F3H1,RD,SLR1,WRKY13	FLS, OsFLS, 2-ODD15, Os2-ODD15, Os2ODD15, OsFLS1, FLS1,OsF3H-1, F3H-1, OsF3H1, OsF3H, F3H, OsF3H3, F3H3,Rd, DFR, OsDFR, OS-DFR, OsDFR1, DFR1, DFR-1,slr1-1, slr1, slr, GAI, OsGAI, OsSLR1, Os SLR1, OsRGA1, OsGRAS-18, OsGRAS-18, GRAS-18, GRAS18, SLR-1,OsWRKY13
48763	32987934	Wu J., Chen Y., Lin H., Chen Y., Yu H., Lu Z., Li X., Zhou H., Chen Z., Liu X.	Comparative Cytological and Transcriptome Analysis Revealed the Normal pollen Development Process and Up-Regulation of Fertility-Related Genes in Newly Developed Tetraploid Rice.	Int J Mol Sci	21(19)		2020	MIL2,RADC1,DFR2 ,RAD51D,AP37 ,C6,CSA,TMS5,PTC1	OsTDL1A, TDL1A, OsMIL2, OsTDL1A/MIL2, OsTDL1a ,OsAP25, Radc1, OsRADC1, AP25,OsTKPR1, TKPR1, OsDFR2, OS-DFR2, OsDFR2A, DFR2A, OsCCRL1, CCRL1,OsRAD51D, OsRad51D, OsRAD51D.1, OsRAD51D.2, OsRAD51D.3,OsAP37,Osc6, Osg6B, OsG6B, OsLTPG25, OsLTPg25, OsLtpVII.1, Os C6,csa, OsCSA,TRZ1, OsTRZ1, OsaTRZ1, OsTMS5,OsMS1, tms9-1, OsPTC1, MS1, TMS9-1, OsTMS9-1
48764	33088046	Aggarwal S., Kumar A., Jain M., Sudan J., Singh K., Kumari S., Mustafiz A.	C-terminally encoded peptides (CEPs) are potential mediators of abiotic stress response in plants.	Physiol Mol Biol Plants	26(10)	2019-2033	2020	CEP8,_,CEP2,CEP5,CEP6,CEP3,CEP6,CEP13,CEP10,CEP12,_,CEP9,CEP1,CEP14,CEP11	OsCEP7,CEP7, OsCEP8, OsCEP1, CEP1,OsCEP2, CEP2,OsCEP2, OsCEP4, CEP4, OsCEP5, CEP5,OsCEP5, OsCEP14, CEP14,OsCEP6, OsCEP6.1, CEP6.1, OsCEP13, CEP13,OsCEP3, OsCEP6, CEP6,OsCEP6, OsCEP3, CEP3,OsCEP13, OsCEP8, CEP8,OsCEP10, OsCEP12, CEP12,OsCEP12, OsCEP7, CEP7,OsCEP15, CEP15,OsCEP9, OsCEP11, CEP11,OsCEP1, OsCEP4, CEP4,OsCEP14, OsCEP9, CEP9,OsCEP11, OsCEP10, CEP10
48765	32910367	Ge Q., Tang Y., Luo W., Zhang J., Chong K., Xu Y.	A Cyclophilin OsCYP20-2 Interacts with OsSYF2 to Regulate Grain Length by Pre-mRNA Splicing.	Rice (N Y)	13(1)	64	2020	CYP20-2,SYF2	OsCYP20-2, OsCYP-11, OsNuCYP20-2,OsSYF2
48766	32808364	Qi D., Wen Q., Meng Z., Yuan S., Guo H., Zhao H., Cui S.	OsLFR is essential for early endosperm and embryo development by interacting with SWI/SNF complex members in Oryza sativa.	Plant J.	104(4)	901-916	2020	MCM3,HAZ1,GE1,PNH1,CESA6,VPE4,CSLA9,SAG12-2,ND1,ROC1,SCR,MCM4,MSRMK2,BIN1,CYCB1;1,CSLC7,LFR,DSG1,SWI3C,CHB703,CSLA1,CHR719,BPH40,MCM2,CCS52B	OsMCM3,OsHAZ1, OsPHD28, PHD28,ge1, ge, CYP78A13, OsCYP78A13, GE, BG2, GES, OsGE/CYP78B5, CYP78B5, OsCYP78B5,OsPNH1,OsCesA6, OsCESA6, OS_CESA06,OsVPE4, OsaLeg4, Leg4,OsCslA9, OsCSLA9, OsCesA9, CesA9,CP, OsSAG12-2,CSLD4, OsCSLD4, OsCD1, CD1, DNL3, OsDNL3, NRL1, OsNRL1, SPO1, OsSPO1, SPO1/OsCSLD4,Roc1(t), GL2-1, OsHDZ23, OsHDZIP23, HDZ23, HDZIP23,OsSCR, OsSCR2, SCR2, OsGRAS-51, OsGRAS51, GRAS-51, GRAS51,OsMCM4,OsMSRMK2, OsMAPK5, OsMAP1, OsMPK3, OsBIMK1, OsMAPK2, MPK5, BIMK1, MAPK2, MAPK5, MPK3, OsMPK5, OsMAPK3, OsMAPK5b, MAPK3,OsBIN1,CycB1;1, CycB1;os;1, Orysa;CycB1;1, OsCycB1;1, CyclaZm, CYCIaZm, OsCYCIaZm, OsCYCB1;4,OsCslC7, OsCSLC7 ,OsLFR,OsMAPK6, MAPK6, OsMPK6, OsSIPK, SIPK, OsMAPK1, MAPK1, MPK1, OsMPK1, MPK6, OsDSG1,OsSWI3C, OsCHB705, CHB705, OsSWI3C1, SWI3C1,OsCHB703, OsSWI3A, SWI3A,OsCslA1, OsCSLA1 ,OsCHR719,Bph40, OsBPH40,OsMCM2,OsWD40-33, WD40-33, OsCCS52B,  OsCCS52B, CCS52B, OsCDH1B, CDH1B
48767	33161338	Pei W., Jain A., Zhao G., Feng B., Xu D., Wang X.	Knockdown of OsSAE1a affects the growth and development and phosphate homeostasis in rice.	J. Plant Physiol.	255	153275	2020		
48768	32956864	Guo J., Zhang X., Ye D., Huang H., Wang Y., Zheng Z., Li T., Yu H.	Crucial roles of cadmium retention in nodeU for restraining cadmium transport from straw to ear at reproductive period in a grain low-cadmium rice line (Oryza sativa L.).	Ecotoxicol. Environ. Saf.	205	111323	2020	CDT1,HMA2,PCS1	OsCDT1, OsCCX2, CCX2, OsNCX8, NCX8,OsHMA2, osHMA2, OsHMA2v ,OsPCS1, OsPCS2, PCS2, OsPCS15, PCS15
48769	32989010	Wang J., Chen Z., Zhang Q., Meng S., Wei C.	The NAC Transcription Factors OsNAC20 and OsNAC26 Regulate Starch and Storage Protein Synthesis.	Plant Physiol.	184(4)	1775-1791	2020	GLUB1A,AGPS2,GLUA2,SSI,GLB1,GLUB1,PUL,GLU7,GLUA1,SBE1,GLUB4,NAC20,GLUC,PRO13A.1,AGPL2,PRO16.2,GLUB5,DPE1,NAC26	GluB, GluB-1a, OsGluB-1a, GluB-1b, GluB1, OsGluB1,OsAGPS2a, AGPS2A, AGPS2B, OsAGPS2, osagps2, APS2, APS2a, APS2b, AGPS2a, APGS2b, OsAGPS2b, AGPP, GAS8, OsAPS2, OsAPS2a, OsAPS2b,Glua2*, Glua2, GLUA-2, GluA-2, Glu20, GluA2, OsEnS-137,OsSSI, SSS 1, SSS1, SS1, OsSS1, SSSI, OsSSSI,glb1(t)*, glb1(t), glb1, alpha-Glb, Glb-1, OsGlb1, Glb1, Glb, OsEnS-77,GluB1, GluB1-A, GluB-1a, GluB-1, OsGluB1, GluB-1b, OsGluB-1b, GLUB1B,OsPUL, SDBE, OsPUL3, RE,Glu7*(GluB2), Glu7, GluB2, GLUB2, GLUB-2, GluB-2, GluB-7, GLUB7,Glua1*, Glua1, GLUA-1, GluA-1, GluA1, Glu19, OsEnS-16,sbe1, Rbe1. Sbe1, sbe1*(QEI), RBE1, BEI, SBE I, QEI, OsBEI, BE1, OsSBE1, OsSBEI, SBEI,GluB4, GluB-4, GluB-5, GluB5, GluB-4/5,ONAC020, ONAC20, DLN1, OsDLN1,GluC, OsEnS-36, EnS-36, GLU2.2, GluC-1, OsGluC-1,RP6, Prol-18, OsEnS-93, pro13a.1, OsPRO13A.1, PROLM25,OsAGPL2, osagpl2, APL2, OsAPL2, AGPiso, sh2, Sh2, GIF2, GAS1 ,Prol-17, OsEnS-88, pro16.2, OsPRO16.2, PROLM24,GluB5, GLU2.3 ,OsDPE1, OsDpe1, Dpe1 ,ONAC026, ONAC26, OsEnS-8, DLN11, OsDLN11
48770	32902115	Esmaeili N., Cai Y., Tang F., Zhu X., Smith J., Mishra N., Hequet E., Ritchie G., Jones D., Shen G., Payton P., Zhang H.	Towards doubling fibre yield for cotton in the semiarid agricultural area by increasing tolerance to drought, heat and salinity simultaneously.	Plant Biotechnol. J.			2020		
48771	32995857	Zhao X., Qiu T., Feng H., Yin C., Zheng X., Yang J., Peng Y.L., Zhao W.	A Novel Glycine-Rich Domain Protein, OsGRDP1, Functions as a Critical Feedback Regulator for Controlling Cell Death and disease resistance in Rice.	J. Exp. Bot.			2020	AOS2,PR10A,SPL-D,PR1B,PR5,RADC1	OsAOS2, CYP74A2, OsAOS, OsAOS1,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsGRDP1, GRDP1, OsSPL-D,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1, OsPR1a, PR1a,OsPR5, Pir2, PR-5, PR5-1,OsAP25, Radc1, OsRADC1, AP25
48772	32980968	Shi Y., Chang Y.L., Wu H.T., Shalmani A., Liu W.T., Li W.Q., Xu J.W., Chen K.M.	OsRbohB-mediated ROS production plays a crucial role in drought stress tolerance of rice.	Plant Cell Rep.	39(12)	1767-1784	2020	WAK95,WAK38,PYL/RCAR5,BOC1,NCED3,NCED1,DREB1C,CDPK9,BSRD1,WRKY70,CATB,WRKY24,SODCC1,APX1,RBOHB,RLCK254,ERF28,PP2C49,RPBF,WRKY45,PP2C74,ZFP182,DREB1B,ABI5	OsWAK95,OsWAK38,OsPYL/RCAR5, PYL5, OsPYL5, OsPYL11, PYL11,OsSRO1c, SRO1c, OsBOC1,OSNCED3, OsNCED-3, OsNCED3, OsNCED3a, NCED3a, OsNCED4, NCED4, OsNECD2, OsNCED2b, NCED2b ,OSNCED1, OsNCED-1, OsNCED3, OsNced3, NCED3, OsNCED9, NCED9,OsDREB1C, CBF1, ERF26, OsERF026, OsERF#026, OsERF26, AP2/EREBP#098, AP2/EREBP98, OsCBF2, CBF2,OsCDPK9, OsCPK9, CPK9,ZFP36, OsZFP36, OsBSRD1, Bsr-d1, BSR-D1, DLN91, OsDLN91,OsWRKY70,CatB, CAT-B, OsCatB, OsCATB, OsCAT1B, CAT1B, CAT2, OsCAT2,OsWRKY24,sodCc1, SODCC.1, sodA, RSODA, OsSOD1, OsCSD2, OsSodA, SodCc2, OsSODA1, SODCc1-Cu/Zn, OsCu/Zn-SOD2, Cu/Zn-SOD2, OsCSD1.2, CSD1.2, OsSODCc1-Cu/Zn, SODCc1-Cu/Zn, CuZnSOD1, Cu/ZnSOD1, OsCu/ZnSOD1, OsCSD4, CDS4, CuZnSOD4, OsCuZnSOD1, OsCSD1, CSD1, OsSOD2,OsAPX1, APXa, OsAPXa, OsAPx01, OsAPx1, OSAPX1, APx1, cAPX, APX2, cAPXa, OscAPXa,rbohB, OsrbohB, Os rbohB, OsRbohB, OsNox1, Nox1, Os-RbohB, RbohB, OsRboh1, Rboh1,OsRLCK254,OsERF#028, OsERF028, OsERF28, OsERF#029, OsERF029, OsERF29, ERF29, DERF4, OsDERF4, AP2/EREBP#161, AP2/EREBP161, OsDREB1J, OsDREB1I, OsDREB1G,OsPP2C49, OsPP76, PP76,OsDof3, OsDOF3, OsEnS-34, OsDof10, Dof10, OsDof-10, OsDOF1, DOF1, DOF3, OsRPBF, OsDOF7,OsWRKY45, OsWRKY45-1, OsWRKY45-2, WRKY45-1, WRKY45-2,OsPP2C74, OsPP120, PP120,OsZFP182,  ZOS3-21, OsZOS3-21, ZOS3, OsZOS3,OsDREB1B, ERF31, OsERF031, OsERF#031, OsERF31, AP2/EREBP#169, AP2/EREBP169, OsDREB1b, OsDREB1C, OsCBF1, CBF1,OsABI5, OsbZIP10, OsABF1, OREB1, OsABI5-1, OsABI5-2, OsOREB1, OREB1 
48773	32881942	Zhang Z., Xiao W., Qiu J., Xin Y., Liu Q., Chen H., Fu Y., Ma H., Chen W., Huang Y., Ruan S., Yan J.	Nystose regulates the response of rice roots to cold stress via multiple signaling pathways: A comparative proteomics analysis.	PLoS ONE	15(9)	e0238381	2020	RSOSPR10,SMG1	RSOsPR10, RsOsPR10a, OsPR10a, OsPR10alpha, OsPR10, PR10, OsBETV1, BETV1,OsMKK4, MKK4, OsMKK4/SMG1, OsMAPKK4, MAPKK4, OsMEK4, MEK4, OsSMG1, SMG1/OsMEK6, OsMEK6, MEK6, OsSTS, STS
48774	32966899	Jiang G., Liu D., Yin D., Zhou Z., Shi Y., Li C., Zhu L., Zhai W.	A Rice NBS-ARC Gene Conferring Quantitative Resistance to Bacterial Blight Is Regulated by a Pathogen Effector-Inducible miRNA.	Mol Plant	13(12)	1752-1767	2020		
48775	32913218	Panthapulakkal Narayanan S., Lung S.C., Liao P., Lo C., Chye M.L.	The overexpression of OsACBP5 protects transgenic rice against necrotrophic, hemibiotrophic and biotrophic pathogens.	Sci Rep	10(1)	14918	2020	ACBP5	OsACBP5
48776	33008047	Wang T., Li P., Mu T., Dong G., Zheng C., Jin S., Chen T., Hou B., Li Y.	Overexpression of <i>UGT74E2</i>, an Arabidopsis IBA Glycosyltransferase, Enhances Seed Germination and Modulates Stress Tolerance via ABA Signaling in Rice.	Int J Mol Sci	21(19)		2020		
48777	32987264	Tiwari P., Indoliya Y., Chauhan A.S., Pande V., Chakrabarty D.	Over-expression of rice R1-type MYB transcription factor confers different abiotic stress tolerance in transgenic Arabidopsis.	Ecotoxicol. Environ. Saf.	206	111361	2020	MYB45	OsMPH1, MPH1, OsMYB45, DLN171, OsDLN171, OsMYB-R1, MYB-R1, CRPG17, OsCRPG17
48778	33007532	Rolly N.K., Imran Q.M., Shahid M., Imran M., Khan M., Lee S.U., Hussain A., Lee I.J., Yun B.W.	Drought-induced atbzip62 transcription factor regulates drought stress response in Arabidopsis.	Plant Physiol. Biochem.	156	384-395	2020		
48779	32876985	Wu J., Zhang Z.S., Xia J.Q., Alfatih A., Song Y., Huang Y.J., Wan G.Y., Sun L.Q., Tang H., Liu Y., Wang S.M., Zhu Q.S., Qin P., Wang Y.P., Li S.G., Mao C.Z., Zhang G.Q., Chu C., Yu L.H., Xiang C.B.	Rice NIN-LIKE PROTEIN 4 plays a pivotal role in nitrogen use efficiency.	Plant Biotechnol. J.			2020	NLP4	OsNLP4, NLP4.1, NLP4.2
48780	32936937	Zhang J., Gu M., Liang R., Shi X., Chen L., Hu X., Wang S., Dai X., Qu H., Li H., Xu G.	OsWRKY21 and OsWRKY108 function redundantly to promote phosphate accumulation through maintaining the constitutive expression of OsPHT1;1 under phosphate-replete conditions.	New Phytol.			2020	PT4,PT1,PT2,PT8,WRKY21,WRKY108	OsPT4, PHT1-4, OsPht1;4, PHT1-2, PHT1;4, OsPHT1;4,OsPT1, PHT1-1, OsPht1;1, Pht1;1, OsPHT1;1, PHT1;1,OsPT2, PTH1-2, OsPht1;2, PHT1;2, OsPHT1;2,OsPT8, PHT1-8, OsPht1;8, Pht1;8, PHT1;8, OsPHT1;8,OsWRKY21,OsWRKY108
48781	32995946	Yarra R., Xue Y.	Ectopic expression of nucleolar DEAD-box RNA helicase OsTOGR1 confers improved heat stress tolerance in transgenic Chinese cabbage.	Plant Cell Rep.	39(12)	1803-1814	2020	TOGR1	OsTOGR1, DDX47, OsDDX47, OsRH10, RH10
48782	32980909	Jung Y.J., Lee H.J., Yu J., Bae S., Cho Y.G., Kang K.K.	Transcriptomic and physiological analysis of OsCAO1 knockout lines using the CRISPR/Cas9 system in rice.	Plant Cell Rep.			2020	YGL10	CAO, OsCAO, CAO1, OsCAO1, Oslls1, Lls1, DVR, PGL
48783	32964416	Wang J., Bao J., Zhou B., Li M., Li X., Jin J.	The osa-miR164 target OsCUC1 functions redundantly with OsCUC3 in controlling rice meristem/organ boundary specification.	New Phytol.			2020	MIR164C,NAM,SRL1,CUC3	miR164c, osa-miR164c,OsNAM, OMTN5, ONAC092, ONAC92, NAC92, CUC2, OsNAM/CUC2, DLN165, OsDLN165, OsCUC1, CUC1, OsNAM/ OMTN5, OsNAM1, NAM1,OsSRL1, CLD1/SRL1, CLD1, OsCLD1, OsSPARK9, SPARK9,OsCUC3, ONAC107, NAC107, DLN214, OsDLN214
48784	32963469	Yang J., Xu P., Yu D.	Genome-Wide Identification and Characterization of the SHI-Related Sequence Gene Family in Rice.	Evol. Bioinform. Online	16	1176934320941495	2020	_,_,_,SHI1,_	,,,OsSHI1,
48785	32669726	Bailey-Serres J., Voesenek LACJ.	Genetic drivers of high-rise rice that survives deep floods.	Nature	584(7819)	44-45	2020		
48786	32839290	Strable J.	Sugars Inform the Circadian Clock How to Shape Rice Shoots via the Strigolactone Pathway.	Plant Cell	32(10)	3043-3044	2020	FC1,CCA1	fc1, OsTB1, tb1, OsTB1/FC1, Os TB1, TB1, OsFC1, MP3, OsMP3,OsCCA1, OsLHY, LHY, LHY-like_chr.8, COC1, DLN203, OsDLN203, LEM1, OsLEM1, Nhd1, OsNhd1
48787	32843433	Shen C., Liu H., Guan Z., Yan J., Zheng T., Yan W., Wu C., Zhang Q., Yin P., Xing Y.	Structural Insight into DNA Recognition by CCT/NF-YB/YC Complexes in Plant Photoperiodic Flowering.	Plant Cell	32(11)	3469-3484	2020	SE1,HD3A,HD2,HD5,GHD7,HAP5C	Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, OsHd1,  Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,Hd2(t), Hd2, qHD2(t), OsPRR37, Os-PRR37, PRR37, Prr4, OsPRR4, DTH7, Os DTH7, OsCCT28, CCT28, Ghd7.1, PRR37/Hd2, EH7-2, EH7-2/Hd2, Hd2/PRR37, PRR37-1a, PRR37-1b, PRR37-1c, PRR37-2a, PRR37- 2, HD7.2,Hd5(t)*, Hd5, qHD5, HAP3H, OsHAP3H, NF-YB, CBF-A, DTH8 , qHD5(t)*, Ghd8, Ghd8/DTH8, Lhd1, NF-YB11, OsNF-YB11, NFYB11, LH8, DTH8/Ghd8, RH8, DTH8/Ghd8/LHD1, CAR8, DTH8/Ghd8/ OsHAP3H, EF8, OsEF8,Ghd2, Ghd7, OsGhd7, OsCCT26, OsCMF8, OsI, Ghd7/Hd4, Hd4, EH7-1/Hd4, Ghd7-0a, EH7-1, EH7/Ghd7, EH7, OsEH7, GLW7.1, OsGLW7.1,OsHAP5C, NF-YC, CBF-C, OsNF-YC2, Os-NF-YC2, NF-YC2, NFYC2, OsNF-YC4-1, NF-YC4-1
48788	32817523	Kitomi Y., Hanzawa E., Kuya N., Inoue H., Hara N., Kawai S., Kanno N., Endo M., Sugimoto K., Yamazaki T., Sakamoto S., Sentoku N., Wu J., Kanno H., Mitsuda N., Toriyama K., Sato T., Uga Y.	Root angle modifications by the <i>DRO1</i> homolog improve rice yields in saline paddy fields.	Proc. Natl. Acad. Sci. U.S.A.	117(35)	21242-21250	2020	DRL2,DRL1,DRO1,DRL3	OsDRL2,OsDRL1, qSOR1, qSOR1/DRL1/OsNGR2, OsNGR2, NGR2,Dro1, OsDRO1, OsSPR1, SPR1, DRO1/OsNGR3, OsNGR3, NGR3,OsDRL3, DRL3/OsNGR1, OsNGR1, NGR1
48789	32796126	Wang F., Han T., Song Q., Ye W., Song X., Chu J., Li J., Chen Z.J.	The Rice Circadian Clock Regulates Tiller Growth and Panicle Development Through Strigolactone Signaling and Sugar Sensing.	Plant Cell	32(10)	3124-3138	2020	D53,D14,D10,WFP,TOC1,FC1,CCA1	D53(D K3), DK3, Dwf34, SMXL6/7/8, OsD53,d14(d10), dwf13, d10, d14, D88, HTD2, OsHTD2, OsD14, qPPB3, D88/D14, HTD4,d10(d15,d16), d16, d15, dwf9, d10, OsCCD8b, OsCCD8, CCD8, OsD10,OsSPL14, SPL14, IPA1, WFP/IPA1, OsSPL14/WFP/IPA1, OsIPA1,  IPA1/OsSPL14,OsTOC1, OsPRR1, Os-PRR1, PRR1, OsRRA21, OsCCT07,fc1, OsTB1, tb1, OsTB1/FC1, Os TB1, TB1, OsFC1, MP3, OsMP3,OsCCA1, OsLHY, LHY, LHY-like_chr.8, COC1, DLN203, OsDLN203, LEM1, OsLEM1, Nhd1, OsNhd1
48790	32777530	Balasaheb Karle S., Kumar K., Srivastava S., Suprasanna P.	Cloning, in silico characterization and expression analysis of TIP subfamily from rice (Oryza sativa L.).	Gene	761	145043	2020		
48791	32811438	Shen L., Zhang Q., Wang Z., Wen H., Hu G., Ren D., Hu J., Zhu L., Gao Z., Zhang G., Guo L., Zeng D., Qian Q.	OsCAF2 contains two CRM domains and is necessary for chloroplast development in rice.	BMC Plant Biol.	20(1)	381	2020	CRS2,CAF2	OsCRS2,OsCAF2
48792	32866188	Chen B., Lin L., Lu Y., Peng J., Zheng H., Yang Q., Rao S., Wu G., Li J., Chen Z., Song B., Chen J., Yan F.	Ubiquitin-Like protein 5 interacts with the silencing suppressor p3 of rice stripe virus and mediates its degradation through the 26S proteasome pathway.	PLoS Pathog.	16(8)	e1008780	2020	S5A,UBL5.1,UBL5.2,RPN13	OsS5a, S5a, OsRpn10, Rpn10, OsvWA9, vWA9,OsUBL5.1,OsUBL5.2,OsRPN13
48793	32867686	Hu C., Sheng O., Dong T., Yang Q., Dou T., Li C., He W., Gao H., Yi G., Deng G., Bi F.	Overexpression of MaTPD1A impairs fruit and pollen development by modulating some regulators in Musa itinerans.	BMC Plant Biol.	20(1)	402	2020		
48794	32866183	Hu J., Huang J., Xu H., Wang Y., Li C., Wen P., You X., Zhang X., Pan G., Li Q., Zhang H., He J., Wu H., Jiang L., Wang H., Liu Y., Wan J.	Rice stripe virus suppresses jasmonic acid-mediated resistance by hijacking brassinosteroid signaling pathway in rice.	PLoS Pathog.	16(8)	e1008801	2020	BIN2,BHLH9	GSK2, Os GSK2, OsGSK2, Os BIN2, OsBIN2, BIN2/GSK2, OsSK22/OsGSK7, OsSK22, OsGSK7, SK22, GSK7, OsSK22/GSK2 ,OsbHLH009, bHLH009, OsMYC2, MYC2
48795	32666540	Chang J.D., Huang S., Yamaji N., Zhang W., Ma J.F., Zhao F.J.	OsNRAMP1 transporter contributes to cadmium and manganese uptake in rice.	Plant Cell Environ.	43(10)	2476-2491	2020	NRAMP1,LCD1	OsNramp1, OsNRAMP1, OsNramp6,NRAMP5, OsNRAMP5, OsNramp5, OsLCD1
48796	32618334	Ai H., Cao Y., Jain A., Wang X., Hu Z., Zhao G., Hu S., Shen X., Yan Y., Liu X., Sun Y., Lan X., Xu G., Sun S.	The ferroxidase LPR5 functions in the maintenance of phosphate homeostasis and is required for normal growth and development of rice.	J. Exp. Bot.	71(16)	4828-4842	2020	PHO1;2,LPR5	OsPHO1;2, PHO1.2, OsPHO1.2, PHO1,OsSTA2, STA2, OsLPR5
48797	32849732	Piacentini D., Della Rovere F., Sofo A., Fattorini L., Falasca G., Altamura M.M.	Nitric Oxide Cooperates With Auxin to Mitigate the Alterations in the root system Caused by Cadmium and Arsenic.	Front Plant Sci	11	1182	2020	RAU1,ASA2,YUCCA1	OsLAX1, OsRAU1, OsAUX1, LAX1, AUX1,OASA2 (=ASA2), OsASA2, OASA2, ASalpha2, OsASalpha2, OASA2,OsYUCCA1, OsYUC1, YUC1
48798	32849682	Aung M.S., Masuda H.	How Does Rice Defend Against Excess Iron?: Physiological and Molecular Mechanisms.	Front Plant Sci	11	1102	2020		
48799	32853345	Sahid S., Roy C., Paul S., Datta R.	Rice Lectin protein Osr40c1 imparts drought tolerance by modulating OsSAM2, OsSAP8 and chromatin-associated proteins.	J. Exp. Bot.			2020	HMGB1,SAMS2,PH9,SAP8,EULD1B,_,_	OsHMGB1, OsMNB1B, MNB1B,OsSAM2, SAM2, OsSAMS2, OS-SAMS2,OsH4, H4, OsPH9,Osi-SAP8, OsiSAP8, OsSAP8, OsSAP1, SAP1,OsEULD1b, EULD1b, Osr40c1, r40c1, OSR40c1, OrysaEULD1B,,
48800	32796598	Li L., He Y., Zhang X., Zhang H., Sun Z., Li J., Hong G.	Alterations of Rice (<i>Oryza sativa</i> L.) DNA Methylation Patterns Associated with Gene Expression in Response to Rice Black Streaked Dwarf Virus.	Int J Mol Sci	21(16)		2020	MET1A	OsMET1a, OsMET1-1, MET1a, MET1-1, OsMET1, OsDMT702, DMT702
48801	32654152	Sun Y., Shi Y., Liu G., Yao F., Zhang Y., Yang C., Guo H., Liu X., Jin C., Luo J.	Natural variation in the OsbZIP18 promoter contributes to branched-chain amino acid levels in rice.	New Phytol.	228(5)	1548-1558	2020	BZIP18,BCKDH,BCAT3,MCCA,BCAT4,ENOYL-COA,MCCB,BCAT1,BCAT5,ETFQO,BCAT2,IVD	OsbZIP18,OsBCKDH,OsBCAT3,OsL55, OsMCCA,OsBCAT4,OsEnoyl-CoA,OsMCCB,OsBCAT1,OsBCAT5,OsETFQO,OsBCAT2,OsIVD, IVDH, OsIVDH
48802	32485736	Ji Y., Huang W., Wu B., Fang Z., Wang X.	The amino acid transporter AAP1 mediates growth and grain yield by regulating neutral amino acid uptake and reallocation in Oryza sativa.	J. Exp. Bot.	71(16)	4763-4777	2020	AAP6	OsAAP6, OsAAP1, AAP1
48803	32827967	Majumdar S., Sachdev S., Kundu R.	Salicylic acid mediated reduction in grain cadmium accumulation and amelioration of toxicity in Oryza sativa L. cv Bandana.	Ecotoxicol. Environ. Saf.	205	111167	2020	NRAMP2,GCC7,PCS1	OsNramp2, OsNRAMP2,HMA3, OsHMA3, OsHMA3a, OsHMA3n, osHMA3, OsHMP34, HMP34,OsPCS1, OsPCS2, PCS2, OsPCS15, PCS15
48804	32825403	Yoo Y.H., Jiang X., Jung K.H.	An Abiotic Stress Responsive U-Box E3 Ubiquitin Ligase Is Involved in OsGI-Mediating Diurnal Rhythm Regulating Mechanism.	Plants (Basel)	9(9)		2020	UPS,PUB67,PUB4,PUB8,PUB10,PUB64,PUB20,PUB43,CCA1,PUB39,PUB5,RLCK280,PUB77,PUB6,PUB34,RLCK207,PUB33,GI,RLCK194,PUB16,PUB2,PUB3,PUB63	OsUPS, OsPUB41, PUB41, CMPG1, OsCMPG1,OsPUB67,OsPUB4, OsPUB04,  OsPUB4, PUB4,OsPUB8, OsPUB08,  OsPUB8, PUB8,OsPUB10,  OsPUB10, PUB10,OsPUB64, OsHOP1, HOP1,  OsPUB64, PUB64,OsPUB20,  OsPUB20, PUB20,OsPUB43,  OsPUB43, PUB43,OsCCA1, OsLHY, LHY, LHY-like_chr.8, COC1, DLN203, OsDLN203, LEM1, OsLEM1, Nhd1, OsNhd1,OsPUB39,  OsPUB39, PUB39,OsPUB5, OsPUB05,  OsPUB5, PUB5,OsPUB52, PUB52, OsRLCK280, OsUSP33, USP33,  OsPUB52, PUB52,OsPUB77, OsEnS-73,  OsPUB77, PUB77,OsPUB6, OsPUB06,  OsPUB6, PUB6,OsPUB34,  OsPUB34, PUB34,OsPUB47, PUB47, OsRLCK207, OsUSP29, USP29,  OsPUB47, PUB47,OsPUB33,  OsPUB33, PUB33,OsGI, Gi, Os-GI,OsPUB51, PUB51, OsRLCK194, OsUSP27, USP27,  OsPUB51, PUB51,OsPUB16,  OsPUB16, PUB16,OsPUB2, OsPUB02,  OsPUB2, PUB2,OsPUB3, OsPUB03,  OsPUB3, PUB3,OsPUB63,  OsPUB63, PUB63
48805	32757315	Chai J., Zhu S., Li C., Wang C., Cai M., Zheng X., Zhou L., Zhang H., Sheng P., Wu M., Jin X., Cheng Z., Zhang X., Lei C., Ren Y., Lin Q., Zhou S., Guo X., Wang J., Zhao Z., Wan J.	Osre1 interacts with OsRIP1 to regulate rice heading date by finely modulating Ehd1 expression.	Plant Biotechnol. J.			2020	EF1,BZIP1,_	Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,OsbZIP01, bZIP01, OsbZIP1, OsRE1, RE1,OsBBX13, BBX13, OsRIP1, RIP1
48806	32824161	Park J.R., Yang W.T., Kim D.H., Kim K.M.	Identification of a Novel Gene, <i>OsBHT</i>, in Response to High Temperature Tolerance at Booting Stage in Rice.	Int J Mol Sci	21(16)		2020	BHT	OsBHT, OsHsp20L, Hsp20L
48807	32842571	Kaspary T.E., Roma-Burgos N., Merotto A.	Snorkeling Strategy: Tolerance to Flooding in Rice and Potential Application for Weed Management.	Genes (Basel)	11(9)		2020	PDC1,SUB1A,AMY3D,B12D1,RSUS3,ADH2	pdc1*, pdc1, pdc4, pdc 1, PDC 1, OsPDC1,Sub1A, Sub1A-1, Sub1A-2, OsSUB1A,Amy3D/E*(RAmy3D/E), alpha Amy3, AmyII-4, AMY1.3, Amy3D, Amy3D/E*, RAmy3D/E, Amy3D_E, Amy8, aAmy3, RAmy3D, OsAmy3D, alphaAmy3, OsRamy3D,OsB12D1,RSus3(t), SUS3, SS3, OsScS3, RSs3, RSus3, OsSUS3, RSS3, OsEnS-111, Susy3, OsSusy3,Adh2*, Adh2, OsADH2
48808	32840735	Wang L., Wang D., Yang Z., Jiang S., Qu J., He W., Liu Z., Xing J., Ma Y., Lin Q., Yu F.	Roles of FERONIA-like receptor genes in regulating grain size.and quality in rice.	Sci China Life Sci			2020		
48809	32761436	Shi Y., He Y., Lv X., Wei Y., Zhang X., Xu X., Li L., Wu J.L.	Chloroplast SRP54s are Essential for Chloroplast Development in Rice.	Rice (N Y)	13(1)	54	2020	CPSRP54B,YGL138,YGL9	OscpSRP54b, cpSRP54b,YGL138(t), SRP54, OsSRP54, OscpSRP54a, cpSRP54a, PGL14, OsPGL1, PGL1,OscpSRP43, cpSRP43, PGL3, OsPGL3, Os YGL9
48810	32903417	Chen J., Liu X., Liu S., Fan X., Zhao L., Song M., Fan X., Xu G.	Co-Overexpression of <i>OsNAR2.1</i> and <i>OsNRT2.3a</i> Increased Agronomic Nitrogen Use Efficiency in Transgenic Rice Plants.	Front Plant Sci	11	1245	2020	HTNE,NAR2.1	NRT2.3, OsNRT2.3, OsNRT2;1, OsNRT2.3a, OsNRT2.3b, OsNRT2;3a, OsNRT2.5 ,OsNAR2.1, OsNRT3.1A
48811	32780621	Chen Y., Dan Z., Li S.	Rice <i>GROWTH-REGULATING FACTOR 7</i> controls tiller number by regulating strigolactone synthesis.	Plant Signal Behav	15(11)	1804685	2020	GRF7,D27,NSP2,NSP1	OsGRF7,d27(d t), dt, dwf23, d27, OsD27,Os NSP2, OsNSP2, OsGRAS-13, OsGRAS13, GRAS-13, GRAS13, OsGRAS12, GRAS12,Os NSP1, OsNSP1, OsGRAS-14, OsGRAS14, GRAS-14, GRAS14
48812	32737885	Cerise M., Giaume F., Galli M., Khahani B., Lucas J., Podico F., Tavakol E., Parcy F., Gallavotti A., Brambilla V., Fornara F.	OsFD4 promotes the rice floral transition via florigen activation complex formation in the shoot apical meristem.	New Phytol.	229(1)	429-443	2021	ARF7A,PAP2,GF14C,GF14D,GF14F,RFT1,RAP1B,MYBR17,MADS62,_,GF14B,HD3A,BZIP77,BZIP24,GF14A,HAP3F,BZIP69,WRKY1,RFL,BZIP42,GID2,RAP1A	OsARF7a, OsARF19, ARF19, OsARF7,MADS34, OsMADS34, RMADS212/RMADS217/RMADS221, OsPAP2/MADS34, MADS34/PAP2, PAP2/OsMADS34, OsMADS34/PAP2, OsMADS19,GF14c, OsGF14c, 14-3-3c,GF14d, OsGF14d, Os14-3-3, 14-3-3d,GF14f, SR14-3-3, OsGF14f, S94, ric1, 14-3-3f,FT-L 3, OsFTL3, FTL3, FT-L3, RFT, OsRFT1,MADS14, OsMADS14, FDRMADS6, RMADS211, AGL10,MYB, OsMYBR17,OsMADS62,B3,GF14b, OsGF14b, 14-3-3b,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,OsbZIP77, OsFD1, FD1,OsbZIP24, OsFD3, FD3, bZIP24/OsFD3,GF14a, OsGF14a, WIN2, 14-3-3a,OsHAP3F, NF-YB, CBF-A, NF-YB10, OsNF-YB10, NFYB10,OsbZIP69, OsFD4, FD4,OsWRKY1, OsWRKY1v2,RFL, OSL, FL, APO2, APO2/RFL, SSC, SSC/RFL/APO2, OsRFL, OsFL, OsAPO2, OsSSC,OsbZIP42, OsABF7, ABF7, HBF1, DLN149, OsDLN149,gid2, GF14e, OsGF14e, OsGID2, 14-3-3e,OsMADS15, FDRMADS3, RMADS215, MADS15, DEP
48813	32927133	Sperandio E.M., Alves T.M., Vale HMMD., Gon?alves LA., Silva E.C.E., Filippi M.C.C.	Signaling defense responses of upland rice to avirulent and virulent strains of Magnaporthe oryzae.	J. Plant Physiol.	253	153271	2020		
48814	32842152	Fayos I., Meunier A.C., Vernet A., Sanz S.N., Portefaix M., Lartaud M., Bastianelli G., P?rin C., Nicolas A., Guiderdoni E.	Assessment of the roles of OsSPO11-2 and OsSPO11-4 in rice meiosis using CRISPR/Cas9 mutagenesis.	J. Exp. Bot.			2020	TOP6A2,TOP6A1,SPO11-4	OsTOP6A2, OsSpo11-2, OsSPO11-2, OsSPO11B, SPO11-2,OsTOP6A1, OsSPO11-1, OsSPO11A, SPO11-1,OsSPO11-4, OsSPO11D
48815	32845426	Guo M., Zhang X., Liu J., Hou L., Liu H., Zhao X.	OsProDH Negatively Regulates Thermotolerance in Rice by Modulating Proline Metabolism and Reactive Oxygen Species Scavenging.	Rice (N Y)	13(1)	61	2020	PRODH	OsProDH, OsPDH, PDH
48816	32778977	Lei L., Zheng H., Bi Y., Yang L., Liu H., Wang J., Sun J., Zhao H., Li X., Li J., Lai Y., Zou D.	Identification of a Major QTL and Candidate Gene Analysis of salt tolerance at the Bud Burst Stage in Rice (Oryza sativa L.) Using QTL-Seq and RNA-Seq.	Rice (N Y)	13(1)	55	2020	SAP16	OsSAP16, ZOS7-05, OsZOS7-05
48817	32644250	Cui Y., Cheng J., Ruan S., Qi P., Liu W., Bian H., Ye L., Zhang Y., Hu J., Dong G., Guo L., Zhang Y., Qian Q., Hu X.	The heterochronic gene Oryza sativa LIKE HETEROCHROMATIN PROTEIN 1 modulates miR156b/c/i/e levels.	J Integr Plant Biol	62(12)	1839-1852	2020	MIR156C,LHP1,MIR156E,MIR156I,HD3A,LCRN1,WFP,D10,GLW7 ,MIR156B,SPL17	miR156c, OsmiR156c, osmiR156c, osa-miR156c,osa-MIR156c, miR156c*osa-miR156c-3p osa-miR156c-5p,OsLHP1,miR156e, OsmiR156e, osmiR156e, osa-miR156e, osa-MIR156e,miR156i, OsmiR156i, osmiR156i, osa-miR156i, osa-MIR156i,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,OsSPL3, SPL3, OsLCRN1,OsSPL14, SPL14, IPA1, WFP/IPA1, OsSPL14/WFP/IPA1, OsIPA1,  IPA1/OsSPL14,d10(d15,d16), d16, d15, dwf9, d10, OsCCD8b, OsCCD8, CCD8, OsD10,OsSPL13, SPL13, OsGLW7,miR156b, OsmiR156b, osmiR156b, osa-miR156b, osa-MIR156b, miR156b*osa-miR156b-3p osa-miR156b-5p,OsSPL17
48818	32867594	Liu R., Jia T., Cui B., Song J.	The expression patterns and putative function of nitrate transporter 2.5 in plants.	Plant Signal Behav	15(12)	1815980	2020	HTNE	NRT2.3, OsNRT2.3, OsNRT2;1, OsNRT2.3a, OsNRT2.3b, OsNRT2;3a, OsNRT2.5 
48819	32791358	Hao D., Wang H., Niu L.	Activation of six lipocalins genes' transcription under PCB18 stress in OsTIL-silenced Oryza sativa L.	Ecotoxicol. Environ. Saf.	204	111063	2020		
48820	32798853	Zhai Y., Wen Z., Han Y., Zhuo W., Wang F., Xi C., Liu J., Gao P., Zhao H., Wang Y., Wang Y., Han S.	Heterogeneous expression of plasma-membrane-localised OsOSCA1.4 complements osmotic sensing based on hyperosmolality and salt stress in Arabidopsis osca1 mutant.	Cell Calcium	91	102261	2020	OSCA2.3,OSCA2.5,OSCA1.1,OSCA2.4,ERD4,OSCA2.2,OSCA1.3,OSCA1.4,CAX2,OSCA2.1	OsOSCA2.3, OsIOSCA2.3, OsDDP4, DDP4, OsDDP4.1,OsEnS-22, OsOSCA2.5, OsIOSCA2.5, OsDDP2, DDP2, OsDDP2.1, OsDDP2.2, OsERD, ERD,OsOSCA1.1, OsIOSCA1.1, OsDDP1, DDP1, OsDDP1.1, OsDDP1.2, OsDDP1.3, OsDDP1.4,OsOSCA2.4, OsIOSCA2.4, OsDDP9, DDP9, OsDDP9.1,OsOSCA3.1, OSCA3.1, OsIOSCA3.1, OsERD4, OsDDP7, DDP7, OsDDP7.1, OsDDP7.2,OsOSCA2.2, OsIOSCA2.2, OsDDP3, DDP3, OsDDP3.1, OsDDP3.2,OsSTA149, OsOSCA1.3, OsIOSCA1.3, OsDDP5, DDP5, OsDDP5.1,OsOSCA1.4 , OsIOSCA1.4, OsDDP8, DDP8, OsDDP8.1, OsDDP8.2,OsCAX2, CAX5, OsNCX7, OsNCX7.1, OsNCX7.2, NCX7, OsVCX2, OsOSCA1.2, OSCA1.2,OsOSCA2.1, OsIOSCA2.1, OsDDP10, DDP10, OsDDP10.1
48821	32732432	Talhelm T., English A.S.	Historically rice-farming societies have tighter social norms in China and worldwide.	Proc. Natl. Acad. Sci. U.S.A.	117(33)	19816-19824	2020		
48822	32665308	Hughes P.W.	OsGSK2 Integrates Jasmonic Acid and Brassinosteroid Signaling in Rice.	Plant Cell	32(9)	2669-2670	2020	_,TIFY11C,TIFY6B,BIN2	OsNINJA1, NINJA1, OsNINJA2, OsNINJA, NINJA,OsJAZ2, JAZ2, OsJAZ 11, OsJAZ11, Os-JAZ11, JAZ11, OsTIFY11c, OsJAZ1, JAZ1,OsJAZ8, JAZ8, OsJAZ 4, OsJAZ4, JAZ4, OsTIFY6b, OsJAZ4-2, JAZ4-2. OsJAZ3, JAZ3,GSK2, Os GSK2, OsGSK2, Os BIN2, OsBIN2, BIN2/GSK2, OsSK22/OsGSK7, OsSK22, OsGSK7, SK22, GSK7, OsSK22/GSK2 
48823	32665307	Zheng J., Hong K., Zeng L., Wang L., Kang S., Qu M., Dai J., Zou L., Zhu L., Tang Z., Meng X., Wang B., Hu J., Zeng D., Zhao Y., Cui P., Wang Q., Qian Q., Wang Y., Li J., Xiong G.	Karrikin Signaling Acts Parallel to and Additively with Strigolactone Signaling to Regulate Rice Mesocotyl Elongation in Darkness.	Plant Cell	32(9)	2780-2805	2020	BIN2,WD40-12,EG1,WD40-66,D14L2,D17,_,D14L3,KUF1,SMAX1,EXPA1,PIP2;8,MADS58,D53,D10,D3,LP2,KAI2,D14,ASP1,TCP9,D53L	GSK2, Os GSK2, OsGSK2, Os BIN2, OsBIN2, BIN2/GSK2, OsSK22/OsGSK7, OsSK22, OsGSK7, SK22, GSK7, OsSK22/GSK2 ,OsWD40-12, TPR1, OsTPR1,eg1, GY1, OsEG1, OsGY1,OsWD40-66, TPR3, OsTPR3, TPR1, OsTRP1, OsTPR3, OsTPL2, TPL2, OsTPL, TPL,OsD14L2, D14L2a, OsD14L2a,d17(t), dwf14, d17, htd1, OsCCD7, CCD7, D17/HTD1, HTD1, OsHTD1, OsD17,,OsD14L3, D14L2b, OsD14L2b,OsKUF1,OsSMAX1,OsEXP1, EXPA1, OsEXPA1, OsaEXPa1.16, RiExA,OsPIP2;8, PIP2.8, PIP2-8, OsPIP2-7,OsMADS58,D53(D K3), DK3, Dwf34, SMXL6/7/8, OsD53,d10(d15,d16), d16, d15, dwf9, d10, OsCCD8b, OsCCD8, CCD8, OsD10,d3, dwf3, D3/OsMAX2, Os_F0760, SOL1, OsORE9, ORE9, MAX2, OsRFPH2-10, RFPH2-10, OsD3,  OsFBL27, FBL27,OsLP2,D14L, OsD14L, OsKAI2,d14(d10), dwf13, d10, d14, D88, HTD2, OsHTD2, OsD14, qPPB3, D88/D14, HTD4,OsLIS-L1, OsWD40-155, ASP1, TPR2, OsTPR2, OsREL2, REL2, OsTPL3, TPL3, OsTPL2, TPL2, ASP-LSL,OsTCP9, OsTCP5, TCP5,OsD53L
48824	32616661	Guo T., Lu Z.Q., Shan J.X., Ye W.W., Dong N.Q., Lin H.X.	<i>ERECTA1</i> Acts Upstream of the OsMKKK10-OsMKK4-OsMPK6 Cascade to Control spikelet number by Regulating Cytokinin Metabolism in Rice.	Plant Cell	32(9)	2763-2779	2020	DST,GN1A,GSN1,DSG1,MSRMK2,SMG2,RLCK204,SMG1	OsDST, DLN102, OsDLN102, HST1, OsHST1,Gn1a, OsCKX2, CKX2, ckx2, Gn1a/OsCKX2, Os CKX2, CKX2/Gn1a,MKP1, OsMKP1, osmkp1, LARGE8, GLA1, OsGLA1,OsMAPK6, MAPK6, OsMPK6, OsSIPK, SIPK, OsMAPK1, MAPK1, MPK1, OsMPK1, MPK6, OsDSG1,OsMSRMK2, OsMAPK5, OsMAP1, OsMPK3, OsBIMK1, OsMAPK2, MPK5, BIMK1, MAPK2, MAPK5, MPK3, OsMPK5, OsMAPK3, OsMAPK5b, MAPK3,YDA1, OsMKKK10, MKKK10, SMG2/OsMKKK10, OsSMG2, OsMAPKKK10, MAPKKK10,OsRLCK204, OsER1, ER1,OsMKK4, MKK4, OsMKK4/SMG1, OsMAPKK4, MAPKK4, OsMEK4, MEK4, OsSMG1, SMG1/OsMEK6, OsMEK6, MEK6, OsSTS, STS
48825	32732308	Liu C., Shen Y., Qin B., Wen H., Cheng J., Mao F., Shi W., Tang D., Du G., Li Y., Wu Y., Cheng Z.	<i>Oryza sativa</i> RNA-Dependent RNA polymerase 6 Contributes to Double-Strand Break Formation in Meiosis.	Plant Cell	32(10)	3273-3289	2020	P31COMET,SDS,SHL2,CRC1	P31comet, OsBVF1, BVF1 ,OsSDS, Orysa;SDS,shl2, SHL2, sh2, OsRDR6, RDR6,OsCRC1
48826	32732309	Zhan J.	RDR6 Is Essential for Double-Strand Break Formation during Male Meiosis in Rice.	Plant Cell	32(10)	3053-3054	2020		
48827	32912488	Zhang T., Tan M., Geng L., Li J., Xiang Y., Zhang B., Zhao Y.	New insight into comprehensive analysis of INDETERMINATE DOMAIN (IDD) gene family in rice.	Plant Physiol. Biochem.	154	547-556	2020		
48828	32620100	Zeng X., Luo Y., Vu N.T.Q., Shen S., Xia K., Zhang M.	CRISPR/Cas9-mediated mutation of OsSWEET14 in rice cv. Zhonghua11 confers resistance to Xanthomonas oryzae pv. oryzae without yield penalty.	BMC Plant Biol.	20(1)	313	2020	XA41	OsSWEET14, SWEET14, Os11N3, Os-11N3, 11N3, Xa41(t), xa41, Os11N3/SWEET14, OsSWEET14/Os11N3
48829	32379873	Somasundaram S., V?ry AA., Vinekar R.S., Ishikawa T., Kumari K., Pulipati S., Kumaresan K., Corratg?-Faillie C., Sowdhamini R., Parida A., Shabala L., Shabala S., Venkataraman G.	Homology Modeling Identifies Crucial Amino-Acid Residues That Confer Higher Na+ Transport Capacity of OcHKT1;5 from Oryza coarctata Roxb.	Plant Cell Physiol.	61(7)	1321-1334	2020	SKC1	OsHKT8, HKT8, Os-HKT1;5, OsHKT1;5, HKT1;5, SKC1, qSKC-1(t), OsSKC1
48830	32433775	Miao J., Li X., Li X., Tan W., You A., Wu S., Tao Y., Chen C., Wang J., Zhang D., Gong Z., Yi C., Yang Z., Gu M., Liang G., Zhou Y.	OsPP2C09, a negative regulatory factor in abscisic acid signalling, plays an essential role in balancing plant growth and drought tolerance in rice.	New Phytol.	227(5)	1417-1433	2020	SAPK8,SAPK10,PYL/RCAR4,SAPK2,PYL/RCAR8,PYL/RCAR6,PYL/RCAR9,PYL/RCAR13,BZIP46,PYL/RCAR2,PYL/RCAR7,SAPK1,SAPK9,PP2C9,PYL/RCAR3,PYL/RCAR7,BZIP12,PYL/RCAR5,PYL/RCAR10	OsSAPK8, OsSnRK2.8, SnRK2.8,OsSAPK10, OsSnRK2.10, SnRK2.10,OsPYL/RCAR4, PYL4, OsPYL4, OsPYL6, PYL6,OsSAPK2, OsSnRK2.2, SnRK2.2,OsPYL/RCAR8, PYL8, OsPYL8, OsPYL9, PYL9, CAPIP1,OsPYL/RCAR6, PYL6, OsPYL6, OsPYL5, PYL5,OsPYL/RCAR9, PYL9, OsPYL9, OsPYL2, PYL2,OsPYL/RCAR1, PYL1, OsPYL1, OsPYL4, PYL4,ABL1, bZIP46, OsABL1, OsbZIP46, OsAREB8, OsABF2, ABF2, OsABF3, ABF3, OsbZIP46CA1, OsZIP46, ZIP46, OsbZIP46/OsABF2,OsPYL/RCAR2, PYL2, OsPYL2, OsPYL3, PYL3,OsPYL/RCAR7, PYL7, OsPYL7, OsPYL8, PYL8, OsEnS-90, RCAR1, OsRCAR1,OsSAPK1, OsSnRK2.1, SnRK2.1,OsSAPK9, OsSnRK2.9, SnRK2.9,OsPP15, PP15, OsPP2C09, PP2C09, OsPP2C9, OsPP2C3,OsPYL/RCAR3, PYL3, OsPYL3, OsPYL10, PYL10, OsRCAR1, RCAR1 ,OsPYL/RCAR7, OsPYL7, PYL7, OsPYL12,OsbZIP12, OsABF1, ABF1, OsOSE2, OSE2, OsbZIP12/OsABF1,OsPYL/RCAR5, PYL5, OsPYL5, OsPYL11, PYL11,OsPYL/RCAR10, PYL10, OsPYL10, OsPYL1, PYL1, R10, OsPYL/R10
48831	32621654	Niu B., Deng H., Li T., Sharma S., Yun Q., Li Q., E Z., Chen C.	OsbZIP76 interacts with OsNF-YBs and regulates endosperm cellularization in rice (Oryza sativa).	J Integr Plant Biol	62(12)	1983-1996	2020	HAP3D,HAP3K,BZIP76	OsHAP3D, OsEnS-83, OsNF-YB9, NF-YB9, NFYB9, OsLEC1A, LEC1A,OsHAP3K/OsNF-YB1, OsHAP3K, OsNF-YB1, NF-YB1, nf-yb1, OsLEC1, OsNF-YB-1, NFYB1, OsEnS-41,OsbZIP76, DLN229, OsDLN229
48832	32765572	Lim C., Kang K., Shim Y., Sakuraba Y., An G., Paek N.C.	Rice ETHYLENE RESPONSE FACTOR 101 Promotes leaf senescence Through Jasmonic Acid-Mediated Regulation of <i>OsNAP</i> and <i>OsMYC2</i>.	Front Plant Sci	11	1096	2020	ERF101,COI1,NYC1,NYC3,NAC58,BHLH9,LOX-L2,SGR,AOS2	OsERF#101, OsERF101, OsDERF6, DERF6, AP2/EREBP#089, AP2/EREBP89, OsRap2.6, Rap2.6, ERF113, OsERF113, OsERF101/OsRAP2.6,OsCOI1a, OsCOI1, Os_F0728, COI1a, F0728,  OsFBL4, FBL4,nyc1, OsNYC1,nyc3, OsNYC3, PPH,OsNAP, NAP, ONAC058, ONAC58, Os PS1, PS1, OsCTb1, CTb1,OsbHLH009, bHLH009, OsMYC2, MYC2,OsLOX-L2, LOX1.1, LOX L-2, LOX-2, OsLOX2, LOX2,sgr(t), sgr, OsSGR, OsSgr, SGR1, OsSGR1,OsAOS2, CYP74A2, OsAOS, OsAOS1
48833	32750653	Huang H.E., Ho M.H., Chang H., Chao H.Y., Ger M.J.	Overexpression of plant ferredoxin-like protein promotes salinity tolerance in rice (Oryza sativa).	Plant Physiol. Biochem.	155	136-146	2020		
48834	32270183	Deng S., Lu L., Li J., Du Z., Liu T., Li W., Xu F., Shi L., Shou H., Wang C.	Purple acid phosphatase 10c encodes a major acid phosphatase that regulates plant growth under phosphate-deficient conditions in rice.	J. Exp. Bot.	71(14)	4321-4332	2020	PAP10C	OsPAP10c
48835	32738438	Prawisut A., Choknud S., Ketudat Cairns JR.	Expression of rice beta-exoglucanase II (OsExoII) in Escherichia coli, purification, and characterization.	Protein Expr. Purif.	175	105708	2020		
48836	32849708	Guo N., Gu M., Hu J., Qu H., Xu G.	Rice Oslht1 Functions in Leaf-to-Panicle Nitrogen Allocation for grain yield and Quality.	Front Plant Sci	11	1150	2020	HT	OsHT, OsLHT1, LHT1
48837	32715397	Sun X., Ma Y., Yang C., Li J.	Rice OVATE family protein 6 regulates leaf angle by modulating secondary cell wall biosynthesis.	Plant Mol. Biol.	104(3)	249-261	2020	CESA6,ROMT9,IRX9,CSLF6,OFP4,4CL3,OSH15,IRX10	OsCesA6, OsCESA6, OS_CESA06,COMT, OsCOMT, ROMT-9, OsCOMT1, OsCAldOMT1, CAldOMT1, OsOMT, OsCOMT15, COMT15,OsIRX9, OsGT43C/OsIRX9, OsGT43C,OsCslF6, OsCSLF6, OsCLD3, CLD3,OsOFP4, OsOFP06, OsOFP6, OFP6,Os4CL3, Os4CL2, Os4CL, 4CL2, 4CL,OSH15, OsH15, OSKN3, Oskn3, HOS3, D6, d6, OSH15/Oskn3, HB253, H15, OsKNOX3, KNOX3,OsIRX10, OsIRX10L, IRX10L
48838	32705427	Wang Y., Wang J., Zhao X., Yang S., Huang L., Du F., Li Z., Zhao X., Fu B., Wang W.	Overexpression of the Transcription Factor Gene OsSTAP1 Increases salt tolerance in Rice.	Rice (N Y)	13(1)	50	2020	_,_,HAK21,TIP2;1,LSI1,ERF101,SKC1,_,ERF62	prx95, OsPRX95,prx54,OsHAK21,OsTIP2;1, TIP2-1, TIP2,lsi1, NIP2-1, OsNIP2;1, NIP2;1, OsLsi1, lsi(t), OsNIP2.1/OsLsi1/OsSIIT1, OsNIP2.1, NIP2.1,OsERF#101, OsERF101, OsDERF6, DERF6, AP2/EREBP#089, AP2/EREBP89, OsRap2.6, Rap2.6, ERF113, OsERF113, OsERF101/OsRAP2.6,OsHKT8, HKT8, Os-HKT1;5, OsHKT1;5, HKT1;5, SKC1, qSKC-1(t), OsSKC1,,OsERF#062, OsERF062, OsERF62, AP2/EREBP#125, AP2/EREBP125, AP2-125, OsLG3, LG3, OsLG3/OsAP2-125, OsAP2-125, WAP1, OsWAP1, OsSTAP1, STAP1, ERF1, OsERF1
48839	32701993	Nagar P., Kumar A., Jain M., Kumari S., Mustafiz A.	Genome-wide analysis and transcript profiling of PSKR gene family members in Oryza sativa.	PLoS ONE	15(7)	e0236349	2020	PSKR1,LRK2,LRK8,LRK5,LRK6,LRK7,PSKR2,LRK4,LRK3,LRK1,_,LRR-RLK1,PSKR3,PSKR14,PSKR13	OsPSKR1, OsPSKR10, PSKR10,OsLRK2, OsPSKR8, PSKR8,OsLRK8, OsPSKR1, PSKR1,OsLRK5, OsPSKR5, PSKR5,OsLRK6, OsPSKR4, PSKR4,OsLRK7, OsPSKR3, PSKR3,OsPSKR2, OsPSKR11, PSKR11,OsLRK4, OsPSKR6, PSKR6,OsLRK3, OsPSKR7, PSKR7,OsLRK1, OsPSKR9, PSKR9,OsPSKR1, PSKR1,OsLRR-RLK1, OsPSKR12, PSKR12,OsPSKR3, OsPSKR15, PSKR15,OsPSKR14,OsPSKR13
48840	32270203	Wang B., Fang R., Zhang J., Han J., Chen F., He F., Liu Y.G., Chen L.	Rice LecRK5 phosphorylates a UGPase to regulate callose biosynthesis during pollen development.	J. Exp. Bot.	71(14)	4033-4041	2020	UGP1,AP1	Ugp1, OsUgp1, UGP2, UGP3,LECRK-S.7, OsLecRK-S.7, OsDAF1, DAF1, OsLecRK5, LecRK5, OsAP1
48841	32643113	Raza Q., Riaz A., Bashir K., Sabar M.	Reproductive tissues-specific meta-QTLs and candidate genes for development of heat-tolerant rice cultivars.	Plant Mol. Biol.	104(1-2)	97-112	2020	BIP2	OsBiP2, Bip2
48842	32793125	Li Y., Jian X., Li Y., Zeng X., Xu L., Khan M.U., Lin W.	<i>OsPAL2-1</i> Mediates Allelopathic Interactions Between Rice and Specific Microorganisms in the Rhizosphere Ecosystem.	Front Microbiol	11	1411	2020	_	OsPAL05, PAL05, OsPAL3, PAL5, PAL3, OsPAL2;3, PAL2;3, OsPAL2-1, PAL2-1
48843	32623622	Wang G., Wang C., Lu G., Wang W., Mao G., Habben J.E., Song C., Wang J., Chen J., Gao Y., Liu J., Greene T.W.	Knockouts of a late flowering gene via CRISPR-Cas9 confer early maturity in rice at multiple field locations.	Plant Mol. Biol.	104(1-2)	137-150	2020	GHD7	Ghd2, Ghd7, OsGhd7, OsCCT26, OsCMF8, OsI, Ghd7/Hd4, Hd4, EH7-1/Hd4, Ghd7-0a, EH7-1, EH7/Ghd7, EH7, OsEH7, GLW7.1, OsGLW7.1
48844	32771146	Seo J.S., Kim J.K.	Nitrogen molecular sensors and their use for screening mutants involved in nitrogen use efficiency.	Plant Sci.	298	110587	2020		
48845	32710800	Yu J., Xuan W., Tian Y., Fan L., Sun J., Tang W., Chen G., Wang B., Liu Y., Wu W., Liu X., Jiang X., Zhou C., Dai Z., Xu D., Wang C., Wan J.	Enhanced OsNLP4-OsNiR cascade confers nitrogen use efficiency by promoting tiller number in rice.	Plant Biotechnol. J.			2020	PSR1,NLP4	PSR1, NiR, OsNiR, OsNIR1, NIR1, FD-NiR, OsNiR2,OsNLP4, NLP4.1, NLP4.2
48846	32765593	Zhao N., Zhang K., Wang C., Yan H., Liu Y., Xu W., Su Z.	Systematic Analysis of Differential H3K27me3 and H3K4me3 Deposition in Callus and Seedling Reveals the Epigenetic Regulatory Mechanisms Involved in Callus Formation in Rice.	Front Genet	11	766	2020	SAUR18,LEC1,SHR1,QHB,MADS22,PLT4,WOX6,WOX11,IAA20,PLT5,MADS27,VP1	OsSAUR18,OsHAP3E, HAP3E, OsLEC1/OsHAP3E, OsLEC1, LEC1, OsNF-YB7, NF-YB7, NFYB7, L1L ,OsSHR1, OsGRAS-38, OsGRAS38, GRAS-38, GRAS38, DLN189, OsDLN189, OsSHR, SHR,OsQHB, OsWOX9, WOX9, WOX5, Os WOX5, OsWOX5, QHB/OsWOX9,OsMADS22, RMD1, DLN68, OsDLN68,OsPLT4, AP2/EREBP#037, AP2/EREBP37, BBM4, OsBBM4,OsWOX6, Os WOX6, OsWOX12B, WOX12B,OsWOX11, Os WOX11, OsWOX12A,OsIAA20,OsPLT5, AP2/EREBP5, AP2/EREBP#005, BBM3, OsBBM3, BBM1, OsBBM1,OsMADS27, MADS-27a, OsSTA66, OsMADS27a,Vp1* (OSVP1), OsVP1, OsVp1, Vp1, ABI3, OsABI3, OsLFL4, OsVp-1, OSVP1
48847	33066648	Punchkhon C., Plaimas K., Buaboocha T., Siangliw J.L., Toojinda T., Comai L., De Diego N., Sp?chal L., Chadchawan S.	Drought-Tolerance Gene Identification Using Genome Comparison and Co-Expression Network Analysis of Chromosome Substitution Lines in Rice.	Genes (Basel)	11(10)		2020		
48848	33116138	Xu Y., Zhang L., Ou S., Wang R., Wang Y., Chu C., Yao S.	Natural variations of SLG1 confer high-temperature tolerance in indica rice.	Nat Commun	11(1)	5441	2020	CTU1,SLG1	RCTU1, OsCTU1,OsSLG1, RCTU2, CTU2, OsCTU2
48849	33047229	Neogy A., Singh Z., Mushahary K.K.K., Yadav S.R.	Dynamic cytokinin signaling and function of auxin in cytokinin responsive domains during rice crown root development.	Plant Cell Rep.			2020		
48850	33028608	Burr C.A., Sun J., Yamburenko M.V., Willoughby A., Hodgens C., Boeshore S.L., Elmore A., Atkinson J., Nimchuk Z.L., Bishopp A., Schaller G.E., Kieber J.J.	The HK5 and HK6 cytokinin receptors mediate diverse developmental pathways in rice.	Development	147(20)		2020		
48851	33024519	Haq S.U., Kumari D., Dhingra P., Kothari S.L., Kachhwaha S.	Variant biochemical responses: intrinsic and adaptive system for ecologically different rice varieties.	J Crop Sci Biotechnol		1-14	2020		
48852	33129120	Li C., Yang Z., Yu T., Hou Q., Liu X., Wang J., Zhang Q., Wu T.	Study on safe usage of agricultural land in karst and non-karst areas based on soil Cd and prediction of Cd in rice: A case study of Heng County, Guangxi.	Ecotoxicol. Environ. Saf.	208	111505	2020		
48853	33037302	Gong D., Xu X., Wu L., Dai G., Zheng W., Xu Z.	Effect of biochar on rice starch properties and starch-related gene expression and enzyme activities.	Sci Rep	10(1)	16917	2020		
48854	33021923	Prabhukarthikeyan S.R., Keerthana U., Krishnan N., M K Y., C P., P P., P C R.	First report of Fusarium proliferatum causing Sheath Rot Disease of Rice in Eastern India.	Plant Dis.			2020		
48855	33043645	Huang Y.T., Wu W., Zou W.X., Wu H.P., Cao D.D.	Drying temperature affects rice seed vigor via gibberellin, abscisic acid, and antioxidant enzyme metabolism.	J Zhejiang Univ Sci B	21(10)	796-810			
48856	32969476	Zhang S., Wu X.Q., Xie H.T., Zhao S.S., Wu J.G.	Multifaceted roles of RNA polymerase IV in plant growth and development.	J. Exp. Bot.	71(19)	5725-5732	2020		
48857	33083898	Liu X., Ma Q., Yu H., Li Y., Zhou L., He Q., Xu Z., Zhou G.	Responses of plant biomass and yield component in rice, wheat, and maize to climatic warming: a meta-analysis.	Planta	252(5)	90	2020		
48858	33089895	Zong W., Ren D., Huang M., Sun K., Feng J., Zhao J., Xiao D., Xie W., Liu S., Zhang H., Qiu R., Tang W., Yang R., Chen H., Xie X., Chen L., Liu Y.G., Guo J.	Strong photoperiod sensitivity is controlled by cooperation and competition among Hd1, Ghd7 and DTH8 in rice heading.	New Phytol.			2020		
48859	33050591	Lu Z., Guo X., Huang Z., Xia J., Li X., Wu J., Yu H., Shahid M.Q., Liu X.	Transcriptome and Gene Editing Analyses Reveal <i>MOF1a</i> Defect Alters the Expression of Genes Associated with Tapetum Development and Chromosome Behavior at Meiosis Stage Resulting in Low pollen Fertility of Tetraploid Rice.	Int J Mol Sci	21(20)		2020		
48860	32870279	Maghiaoui A., Gojon A., Bach L.	NRT1.1-centered nitrate signaling in plants.	J. Exp. Bot.	71(20)	6226-6237	2020		
48861	33141301	Xu Q., Yu X., Cui Y., Xia S., Zeng D., Qian Q., Ren D.	LRG1 maintains sterile lemma identity by regulating OsMADS6 expression in rice.	Sci China Life Sci			2020		
48862	33098552	Bommisetty R., Chakravartty N., Bodanapu R., Naik J.B., Panda S.K., Lekkala S.P., Lalam K., Thomas G., Mallikarjuna S.J., Eswar G.R., Kadambari G.M., Bollineni S.N., Issa K., Akkareddy S., Srilakshmi C., Hariprasadreddy K., Rameshbabu P., Sudhakar P., Gupta S., Lachagari V.B.R., Vemireddy L.R.	Discovery of genomic regions and candidate genes for grain weight employing next generation sequencing based QTL-seq approach in rice (Oryza sativa L.).	Mol. Biol. Rep.	47(11)	8615-8627	2020		
48863	32919099	Acosta-Motos JR., Rothwell S.A., Massam M.J., Albacete A., Zhang H., Dodd I.C.	Alternate wetting and drying irrigation increases water and phosphorus use efficiency independent of substrate phosphorus status of vegetative rice plants.	Plant Physiol. Biochem.	155	914-926	2020		
48864	33045435	Ranjan R., Kumar N., Gautam A., Kumar Dubey A., Pandey S.N., Mallick S.	Chlorella sp. modulates the glutathione mediated detoxification and S-adenosylmethionine dependent methyltransferase to counter arsenic toxicity in Oryza sativa L.	Ecotoxicol. Environ. Saf.	208	111418	2020		
48865	33066559	Satturu V., Vattikuti J.L., J DS., Kumar A., Singh R.K., M SP., Zaw H., Jubay M.L., Satish L., Rathore A., Mulinti S., Lakshmi Vg I., Chakraborty A., Thirunavukkarasu N.	Multiple Genome Wide Association Mapping Models Identify Quantitative Trait Nucleotides for Brown Planthopper (<i>Nilaparvata lugens</i>) Resistance in MAGIC <i>Indica</i> Population of Rice.	Vaccines (Basel)	8(4)		2020		
48866	33090462	Tadaiesky L.B.A., Silva BRSD., Batista B.L., Lobato AKDS.	Brassinosteroids trigger tolerance to iron toxicity in rice.	Physiol Plant			2020		
48867	33098724	Chaves-Sanjuan A., Gnesutta N., Gobbini A., Martignago D., Bernardini A., Fornara F., Mantovani R., Nardini M.	Structural determinants for NF-Y subunit organization and NF-Y/DNA association in plants.	Plant J.			2020		
48868	33121205	Ramalingam J., Palanisamy S., Alagarasan G., Renganathan V.G., Ramanathan A., Saraswathi R.	Improvement of Stable Restorer Lines for Blast Resistance through Functional Marker in Rice (<i>Oryza sativa</i> L.).	Genes (Basel)	11(11)		2020		
48869	33074438	Ahmadizadeh M., Chen J.T., Hasanzadeh S., Ahmar S., Heidari P.	Insights into the genes involved in the ethylene biosynthesis pathway in Arabidopsis thaliana and Oryza sativa.	J Genet Eng Biotechnol	18(1)	62	2020		
48870	32898258	Tseng K.C., Li G.Z., Hung Y.C., Chow C.N., Wu N.Y., Chien Y.Y., Zheng H.Q., Lee T.Y., Kuo P.L., Chang S.B., Chang W.C.	EXPath 2.0: An Updated Database for Integrating High-Throughput Gene Expression Data with Biological Pathways.	Plant Cell Physiol.	61(10)	1818-1827	2020		
48871	33081724	Yu B., Liu J., Wu D., Liu Y., Cen W., Wang S., Li R., Luo J.	Weighted gene coexpression network analysis-based identification of key modules and hub genes associated with drought sensitivity in rice.	BMC Plant Biol.	20(1)	478	2020		
48872	33105034	Nishizawa-Yokoi A., Saika H., Hara N., Lee L.Y., Toki S., Gelvin S.B.	Agrobacterium T-DNA integration in somatic cells does not require the activity of DNA polymerase theta.	New Phytol.			2020	POLQ	PolQ, OsPolQ
48873	33027309	Iqbal A., He L., Ali I., Ullah S., Khan A., Khan A., Akhtar K., Wei S., Zhao Q., Zhang J., Jiang L.	Manure combined with chemical fertilizer increases rice productivity by improving soil health, post-anthesis biomass yield, and nitrogen metabolism.	PLoS ONE	15(10)	e0238934	2020		
48874	33129078	Ke J., Pu W.X., Wang H., Liu L.H., Sheng S.	Phenotypical evidence of effective amelioration of ammonium-inhibited plant (root) growth by exogenous low urea.	J. Plant Physiol.	255	153306	2020		
48875	33097753	Liu Y., Wang Y., Chen G., Li C., Jiang S., Parajulee M.N., Chen F.	Elevated CO2 alters transgene methylation not only in promoterregion but also in codingregion of Bt rice under different N-fertilizer levels.	Sci Rep	10(1)	18138	2020		
48876	33038484	Liu X., Hu Q., Yan J., Sun K., Liang Y., Jia M., Meng X., Fang S., Wang Y., Jing Y., Liu G., Wu D., Chu C., Smith S.M., Chu J., Wang Y., Li J., Wang B.	zeta-Carotene Isomerase Suppresses Tillering in Rice through the Coordinated Biosynthesis of Strigolactone and Abscisic Acid.	Mol Plant	13(12)	1784-1801	2020	T20	OsT20, Z-ISO, HTD12, OsHTD12
48877	33084136	Bauters L., Kyndt T., De Meyer T., Morreel K., Boerjan W., Lefevere H., Gheysen G.	chorismate mutase and isochorismatase, two potential effectors of the migratory nematode Hirschmanniella oryzae, increase host susceptibility by manipulating secondary metabolite content of rice.	Mol. Plant Pathol.	21(12)	1634-1646	2020		
48878	33143979	Ma L.Y., Zhai X.Y., Qiao Y.X., Zhang A.P., Zhang N., Liu J., Yang H.	Identification of a novel function of a component in the jasmonate signaling pathway for intensive pesticide degradation in rice and environment through an epigenetic mechanism.	Environ. Pollut.	268(Pt A)	115802	2021		
48879	33036868	Weng L., Zhang M., Wang K., Chen G., Ding M., Yuan W., Zhu Y., Xu W., Xu F.	"Potassium alleviates ammonium toxicity in rice by reducing its uptake through activation of plasma membrane H+-ATPase to enhance proton extrusion" [Plant Physiol. Biochem. 151, (June 2020) 429-437].	Plant Physiol. Biochem.	155	987	2020		
48880	33160733	Yan J., Fischel M., Chen H., Siebecker M.G., Wang P., Zhao F.J., Sparks D.L.	Cadmium speciation and release kinetics in a paddy soil as affected by soil amendments and flooding-draining cycle.	Environ. Pollut.	268(Pt B)	115944	2021		
48881	33089345	Xiang X.J., Sun L.P., Yu P., Yang Z.F., Zhang P.P., Zhang Y.X., Wu W.X., Chen D.B., Zhan X.D., Khan R.M., Abbas A., Cheng S.H., Cao L.Y.	The MYB transcription factor Baymax1 plays a critical role in rice male fertility.	Theor. Appl. Genet.			2020		
48882	33047500	Kim P., Xue C.Y., Song H.D., Gao Y., Feng L., Li Y., Xuan Y.H.	Tissue-specific activation of DOF11 promotes rice resistance to sheath blight disease and increases grain weight via activation of SWEET14.	Plant Biotechnol. J.			2020		
48883	33120266	Lan Y., Chai Y., Xing C., Wu K., Wang L., Cai M.	Nitric oxide reduces the aluminum-binding capacity in rice root tips by regulating the cell wall composition and enhancing antioxidant enzymes.	Ecotoxicol. Environ. Saf.	208	111499	2020		
48884	33022691	Horgan F.G., Arida A., Ardestani G., Almazan M.L.P.	Intraspecific competition counters the effects of elevated and optimal temperatures on phloem-feeding insects in tropical and temperate rice.	PLoS ONE	15(10)	e0240130	2020		
48885	33193492	Zhang C., Wang D., Wang J., Sun Q., Tian L., Tang X., Yuan Z., He H., Yu S.	Genetic Dissection and Validation of Chromosomal Regions for Transmission Ratio Distortion in Intersubspecific Crosses of Rice.	Front Plant Sci	11	563548	2020		
48886	33189056	Zhu Y., Li T., Xu J., Wang J., Wang L., Zou W., Zeng D., Zhu L., Chen G., Hu J., Gao Z., Dong G., Ren D., Shen L., Zhang Q., Guo L., Hu S., Qian Q., Zhang G.	leaf width gene LW5/D1 affects plant architecture and yield in rice by regulating nitrogen utilization efficiency.	Plant Physiol. Biochem.	157	359-369	2020		
48887	32777117	Yang D., Li S., Lu L., Fang J., Wang W., Cui H., Tang D.	Identification and application of the Pigm-1 gene in rice disease resistance breeding.	Plant Biol (Stuttg)	22(6)	1022-1029	2020		
48888	33079957	Vishnukiran T., Neeraja C.N., Jaldhani V., Vijayalakshmi P., Raghuveer Rao P., Subrahmanyam D., Voleti S.R.	A major pleiotropic QTL identified for yield components and nitrogen content in rice (Oryza sativa L.) under differential nitrogen field conditions.	PLoS ONE	15(10)	e0240854	2020		
48889	33059592	Zhang H., Chen J., Shan S., Cao F., Chen G., Zou Y., Huang M., Abou-Elwafa SF.	Proteomic profiling reveals differentially expressed proteins associated with amylose accumulation during rice grain filling.	BMC Genomics	21(1)	714	2020		
48890	33053500	Li P., Chen B., Ding F.	Gluconate enhanced the water uptake and improved the growth of rice seedlings under PEG-induced osmotic stress.	Plant Physiol. Biochem.	156	514-523	2020		
48891	33099327	Zeng F., Wang G., Liang Y., Guo N., Zhu L., Wang Q., Chen H., Ma D., Wang J.	Disentangling the photosynthesis performance in japonica rice during natural leaf senescence using OJIP fluorescence transient analysis.	Funct. Plant Biol.			2020		
48892	33077734	Ampawong S., Kengkoom K., Sukphopetch P., Aramwit P., Muangkaew W., Kanjanapruthipong T., Buaban T.	Evaluating the effect of rice (Oryza sativa L.: SRNC05053-6-2) crude extract on psoriasis using in vitro and in vivo models.	Sci Rep	10(1)	17618	2020		
48893	33142180	Rativa A.G.S., Junior A.T.A., Friedrich D.D.S., Gastmann R., Lamb T.I., Silva A.D.S., Adamski J.M., Fett J.P., Ricachenevsky F.K., Sperotto R.A.	Root responses of contrasting rice genotypes to low temperature stress.	J. Plant Physiol.	255	153307	2020		
48894	33057912	Ramos A.C., Melo J., de Souza SB., Bertolazi A.A., Silva R.A., Rodrigues W.P., Campostrini E., Olivares F.L., Eutr?pio FJ., Cruz C., Dias T.	Inoculation with the endophytic bacterium Herbaspirillum seropedicae promotes growth, nutrient uptake and photosynthetic efficiency in rice.	Planta	252(5)	87	2020		
48895	33130401	V P., Tyagi A.	Correlation between expression and activity of ADP glucose pyrophosphorylase and starch synthase and their role in starch accumulation during grain filling under drought stress in rice.	Plant Physiol. Biochem.	157	239-243	2020		
48896	33193743	Pabuayon I.C.M., Kitazumi A., Gregorio G.B., Singh R.K., de Los Reyes BG.	Contributions of Adaptive Plant Architecture to Transgressive Salinity Tolerance in Recombinant Inbred Lines of Rice: Molecular Mechanisms Based on Transcriptional Networks.	Front Genet	11	594569	2020		
48897	33050518	Yue E., Cao H., Liu B.	<i>OsmiR535</i>, a Potential Genetic Editing Target for Drought and Salinity Stress Tolerance in <i>Oryza sativa</i>.	Plants (Basel)	9(10)		2020		
48898	33193516	Cen W., Zhao W., Ma M., Lu S., Liu J., Cao Y., Zeng Z., Wei H., Wang S., Li R., Luo J.	The Wild Rice Locus <i>CTS-12</i> Mediates ABA-Dependent Stomatal Opening Modulation to Limit Water Loss Under Severe Chilling Stress.	Front Plant Sci	11	575699	2020		
48899	33024209	Kaur N., Sagar A., Sharma P., Ashish, Pati P.K.	Structural insights into rice SalTol QTL located SALT protein.	Sci Rep	10(1)	16589	2020		
48900	33097962	Zhou H., Yang M., Zhao L., Zhu Z., Liu F., Sun H., Sun C., Tan L.	HIGH-TILLERING AND DWARF 12 regulates photosynthesis and plant architecture by affecting carotenoid biosynthesis in rice.	J. Exp. Bot.			2020	T20	OsT20, Z-ISO, HTD12, OsHTD12
48901	33016576	Ermakova M., Arrivault S., Giuliani R., Danila F., Alonso-Cantabrana H., Vlad D., Ishihara H., Feil R., Guenther M., Borghi G.L., Covshoff S., Ludwig M., Cousins A.B., Langdale J.A., Kelly S., Lunn J.E., Stitt M., von Caemmerer S., Furbank R.T.	Installation of C4 photosynthetic pathway enzymes in rice using a single construct.	Plant Biotechnol. J.			2020		
48902	33115624	Kumar A., Singh S., Mukherjee A., Rastogi R.P., Verma J.P.	Salt-tolerant plant growth-promoting Bacillus pumilus strain JPVS11 to enhance plant growth attributes of rice and improve soil health under salinity stress.	Microbiol. Res.	242	126616	2021		
48903	33067639	Zhu M., Hu Y., Tong A., Yan B., Lv Y., Wang S., Ma W., Cui Z., Wang X.	LAZY1 Controls tiller angle and Shoot Gravitropism by Regulating the Expression of Auxin Transporters and Signaling Factors in Rice.	Plant Cell Physiol.			2020		
48904	33004003	Mirdar Mansuri R., Shobbar Z.S., Babaeian Jelodar N., Ghaffari M., Mohammadi S.M., Daryani P.	Salt tolerance involved candidate genes in rice: an integrative meta-analysis approach.	BMC Plant Biol.	20(1)	452	2020		
48905	33120000	Sahu G., Panda B.B., Dash S.K., Chandra T., Shaw B.P.	Cell cycle events and expression of cell cycle regulators are determining factors in differential grain filling in rice spikelets based on their spatial location on compact panicles.	Funct. Plant Biol.			2020		
48906	33095478	Zhao H., Yin C.C., Ma B., Chen S.Y., Zhang J.S.	Ethylene signaling in rice and Arabidopsis: New regulators and mechanisms.	J Integr Plant Biol			2020		
48907	32989851	Liu S., Zhao L., Liao Y., Luo Z., Wang H., Wang P., Zhao H., Xia J., Huang C.F.	Dysfunction of the 4-coumarate:coenzyme A ligase 4CL4 impacts aluminum resistance and lignin accumulation in rice.	Plant J.	104(5)	1233-1250	2020		
48908	33053501	Cheng X., Cao J., Gao C., Gao W., Yan S., Yao H., Xu K., Liu X., Xu D., Pan X., Lu J., Chang C., Zhang H., Ma C.	Identification of the wheat C3H gene family and expression analysis of candidates associated with seed dormancy and germination.	Plant Physiol. Biochem.	156	524-537	2020		
48909	33098450	Gao Y., Liu H., Zhang K., Li F., Wu M., Xiang Y.	A moso bamboo transcription factor, Phehdz1, positively regulates the drought stress response of transgenic rice.	Plant Cell Rep.			2020		
48910	33045086	Tanaka N., Shenton M., Kawahara Y., Kumagai M., Sakai H., Kanamori H., Yonemaru J., Fukuoka S., Sugimoto K., Ishimoto M., Wu J., Ebana K.	Investigation of the genetic diversity of a core collection of japanese rice landraces (JRC) using whole-genome sequencing.	Plant Cell Physiol.			2020		
48911	33080421	Wu J., Song Q., Zhou J., Wu Y., Liu X., Liu J., Zhou L., Wu Z., Wu W.	Cadmium threshold for acidic and multi-metal contaminated soil according to Oryza sativa L. Cadmium accumulation: Influential factors and prediction model.	Ecotoxicol. Environ. Saf.	208	111420	2020		
48912	33034884	Chaudhary C., Sharma N., Khurana P.	Decoding the wheat awn transcriptome and overexpressing TaRca1beta in rice for heat stress tolerance.	Plant Mol. Biol.	105(1-2)	133-146	2021		
48913	33076295	Akhtamov M., Adeva C., Shim K.C., Lee H.S., Kim S.H., Jeon Y.A., Luong N.H., Kang J.W., Lee J.Y., Ahn S.N.	Characterization of Quantitative Trait Loci for Germination and coleoptile length under Low-Temperature Condition Using Introgression Lines Derived from an Interspecific Cross in Rice.	Genes (Basel)	11(10)		2020		
48914	33110160	Honma Y., Adhikari P.B., Kuwata K., Kagenishi T., Yokawa K., Notaguchi M., Kurotani K., Toda E., Bessho-Uehara K., Liu X., Zhu S., Wu X., Kasahara R.D.	High-quality sugar production by osgcs1 rice.	Commun Biol	3(1)	617	2020	_,GCS1	,OsGCS1, OsHAP2(GCS1), OsHAP2, HAP2
48915	33068698	Samanta S., Singh A., Banerjee A., Roychoudhury A.	Exogenous supplementation of melatonin alters representative organic acids and enzymes of respiratory cycle as well as sugar metabolism during arsenic stress in two contrasting indica rice cultivars.	J. Biotechnol.	324	220-232	2020		
48916	33098731	Miao Liu J., Mei Q., Yun Xue C., Yuan Wang Z., Pin Li D., Xin Zhang Y., Hu Xuan Y.	Mutation of G-protein gamma subunit DEP1 increases planting density and resistance to sheath blight disease in rice.	Plant Biotechnol. J.			2020		
48917	33220604	Xu X.Y., Sun L., Li S., Xu H., Lei P.	Welan gum promoted the growth of rice seedlings by enhancing carbon and nitrogen assimilation.	Carbohydr. Res.	498	108181	2020		
48918	33070243	Rajpoot R., Srivastava R.K., Rani A., Pandey P., Dubey R.S.	Manganese-induced oxidative stress, ultrastructural changes, and proteomics studies in rice plants.	Protoplasma			2020		
48919	33046875	Debernardi J.M., Tricoli D.M., Ercoli M.F., Hayta S., Ronald P., Palatnik J.F., Dubcovsky J.	A GRF-GIF chimeric protein improves the regeneration efficiency of transgenic plants.	Nat. Biotechnol.	38(11)	1274-1279	2020		
48920	33160738	Guo Y., Mao K., Cao H., Ali W., Lei D., Teng D., Chang C., Yang X., Yang Q., Niazi N.K., Feng X., Zhang H.	Exogenous selenium (cadmium) inhibits the absorption and transportation of cadmium (selenium) in rice.	Environ. Pollut.	268(Pt A)	115829	2021		
48921	33035313	Osnato M., Lacchini E., Pilatone A., Dreni L., Grioni A., Chiara M., Horner D., Pelaz S., Kater M.M.	Transcriptome analysis reveals rice OsMADS13 as an important repressor of the carpel development pathway in ovules.	J. Exp. Bot.			2020		
48922	33047333	Michard E., Simon A.A.	Melatonin's antioxidant properties protect plants under salt stress.	Plant Cell Environ.			2020		
48923	33060584	Gao Y., Xu Z., Zhang L., Li S., Wang S., Yang H., Liu X., Zeng D., Liu Q., Qian Q., Zhang B., Zhou Y.	MYB61 is regulated by GRF4 and promotes nitrogen utilization and biomass production in rice.	Nat Commun	11(1)	5219	2020		
48924	33126493	Deng X., Zheng W., Zhan Q., Deng Y., Zhou Y., Bai L.	New Lead Discovery of Herbicide Safener for Metolachlor Based on a Scaffold-Hopping Strategy.	Molecules	25(21)		2020		
48925	33005224	He W., Chen C., Adedze Y.M.N., Dong X., Xi K., Sun Y., Dang T., Jin D.	Multicentric origin and diversification of <i>atp6</i>-<i>orf79</i>-like structures reveal mitochondrial gene flows in <i>Oryza rufipogon</i> and <i>Oryza sativa</i>.	Evol Appl	13(9)	2284-2299	2020		
48926	33090487	Wang W., He J., Wang Z., Gu J., Liu L., Zhang W., Ziska L.H., Zhu J.	Leaf characteristics of rice cultivars with a stronger yield response to projected increases in CO2 concentration.	Physiol Plant			2020		
48927	33004006	Zhang J., Wu J., Guo M., Aslam M., Wang Q., Ma H., Li S., Zhang X., Cao S.	Genome-wide characterization and expression profiling of Eucalyptus grandis HD-Zip gene family in response to salt and temperature stress.	BMC Plant Biol.	20(1)	451	2020		
48928	33288021	Liao S., Yan J., Xing H., Tu Y., Zhao H., Wang G.	Genetic basis of vascular bundle variations in rice revealed by genome-wide association study.	Plant Sci.	302	110715	2021		
48929	33111313	Tian P., Zhang X., Xia R., Liu Y., Wang M., Li B., Liu T., Shi J., Wing R.A., Meyers B.C., Chen M.	Evolution and diversification of reproductive phased small interfering RNAs in Oryza species.	New Phytol.			2020		
48930	33023639	Jiang Y.Y., Chai Y.P., Lu M.H., Han X.L., Lin Q., Zhang Y., Zhang Q., Zhou Y., Wang X.C., Gao C., Chen Q.J.	Prime editing efficiently generates W542L and S621I double mutations in two ALS genes in maize.	Genome Biol.	21(1)	257	2020		
48931	32996244	Jiang M., He Y., Chen X., Zhang X., Guo Y., Yang S., Huang J., Traw M.B.	CRISPR-based assessment of genomic structure in the conserved SQUAMOSA promoter-binding-like gene clusters in rice.	Plant J.	104(5)	1301-1314	2020		
48932	33123454	Sahu P.K., Mondal S., Sao R., Vishwakarma G., Kumar V., Das B.K., Sharma D.	Genome-wide association mapping revealed numerous novel genomic loci for grain nutritional and yield-related traits in rice (<i>Oryza sativa</i> L.) landraces.	3 Biotech	10(11)	487	2020		
48933	33193529	Forlani G., Funck D.	A Specific and Sensitive Enzymatic Assay for the Quantitation of L-Proline.	Front Plant Sci	11	582026	2020		
48934	33288029	Yan Y., Wei M., Li Y., Tao H., Wu H., Chen Z., Li C., Xu J.H.	miR529a controls plant height, tiller number, panicle architecture and grain size by regulating SPL target genes in rice (Oryza sativa L.).	Plant Sci.	302	110728	2021		
48935	33090519	Sineshchekov V., Koppel L., Riemann M., Nick P.	Phytochrome A and its Functional Manifestations in Etiolated and Far-Red Light-Grown Seedlings of the Wild-Type Rice and its Hebiba and Cpm2 Mutants Deficient in the Defense-related Phytohormone Jasmonic Acid.	Photochem. Photobiol.			2020		
48936	33075506	Wang L.M., Shen B.R., Li B.D., Zhang C.L., Lin M., Tong P.P., Cui L.L., Zhang Z.S., Peng X.X.	A Synthetic Photorespiratory Shortcut Enhances Photosynthesis to Boost Biomass and grain yield in Rice.	Mol Plant	13(12)	1802-1815	2020		
48937	33105815	Chukwu S.C., Rafii M.Y., Ramlee S.I., Ismail S.I., Oladosu Y., Muhammad I., Musa I., Ahmed M., Jatto M.I., Yusuf B.R.	Recovery of Recurrent Parent Genome in a Marker-Assisted Backcrossing Against Rice Blast and Blight Infections Using Functional Markers and SSRs.	Plants (Basel)	9(11)		2020		
48938	33111932	Cassol J.C., Sponchiado D., Dornelles S.H.B., Tabaldi L.A., Barreto E.P.M., Pivetta M., Lopes S.J.	Silicon as an attenuator of drought stress in plants of Oryza sativa L. treated with dietholate.	Braz J Biol			2020		
48939	33054745	Zhao C., Zhao L., Zhao Q., Chen T., Yao S., Zhu Z., Zhou L., Nadaf A.B., Liang W., Lu K., Zhang Y., Wang C.	Genetic dissection of eating and cooking qualities in different subpopulations of cultivated rice (Oryza sativa L.) through association mapping.	BMC Genet.	21(1)	119	2020		
48940	33193672	Bhuvaneswari S., Gopala Krishnan S., Bollinedi H., Saha S., Ellur R.K., Vinod K.K., Singh I.M., Prakash N., Bhowmick P.K., Nagarajan M., Singh N.K., Singh A.K.	Genetic Architecture and Anthocyanin Profiling of Aromatic Rice From Manipur Reveals Divergence of <i>Chakhao</i> Landraces.	Front Genet	11	570731	2020		
48941	33124406	Deng P.H., Cai Y.Q., Zhou H., Liu Y., Yang W.J., Gu J.F., Liao B.H.	[Key Stage of As Accumulation in Rice Under As Stress at Different Growth Stages].	Huan Jing Ke Xue	41(10)	4726-4732	2020		
48942	33070240	Regon P., Dey S., Chowardhara B., Saha B., Kar S., Tanti B., Panda S.K.	Physio-biochemical and molecular assessment of Iron (Fe2+) toxicity responses in contrasting indigenous aromatic Joha rice cultivars of Assam, India.	Protoplasma			2020		
48943	33178234	Lin H., Arrivault S., Coe R.A., Karki S., Covshoff S., Bagunu E., Lunn J.E., Stitt M., Furbank R.T., Hibberd J.M., Quick W.P.	A Partial C4 Photosynthetic Biochemical Pathway in Rice.	Front Plant Sci	11	564463	2020		
48944	33044614	Chiao W.T., Chen B.C., Syu C.H., Juang K.W.	Aspects of cultivar variation in physiological traits related to Cd distribution in rice plants with a short-term stress.	Botanical Studies	61(1)	27	2020		
48945	33074410	Yang T., Zhou L., Zhao J., Dong J., Liu Q., Fu H., Mao X., Yang W., Ma Y., Chen L., Wang J., Bai S., Zhang S., Liu B.	The Candidate Genes Underlying a Stably Expressed QTL for Low Temperature Germinability in Rice (Oryza sativa L.).	Rice (N Y)	13(1)	74	2020		
48946	33030605	Volante A., Tondelli A., Desiderio F., Abbruscato P., Menin B., Biselli C., Casella L., Singh N., McCouch S.R., Tharreau D., Zampieri E., Cattivelli L., Val? G.	Genome wide association studies for japonica rice resistance to blast in field and controlled conditions.	Rice (N Y)	13(1)	71	2020		
48947	33104219	Morii M., Sugihara A., Takehara S., Kanno Y., Kawai K., Hobo T., Hattori M., Yoshimura H., Seo M., Ueguchi-Tanaka M.	The Dual Function of OsSWEET3a as a Gibberellin and Glucose Transporter Is Important for Young Shoot Development in Rice.	Plant Cell Physiol.	61(11)	1935-1945	2020	SWEET3A	OsSWEET3a, SWEET3a
48948	33057095	Farooq M., Jan R., Kim K.M.	Gravistimulation effects on Oryza sativa amino acid profile, growth pattern and expression of OsPIN genes.	Sci Rep	10(1)	17303	2020		
48949	33034373	Aboshi T., Iitsuka C., Galis I., Teraishi M., Kamo M., Nishimura A., Ishihara A., Mori N., Murayama T.	Isopentylamine is a novel defence compound induced by insect feeding in rice.	Plant Cell Environ.	44(1)	247-256	2021		
48950	33193518	Chen C., Norton G.J., Price A.H.	Genome-Wide Association Mapping for salt tolerance of Rice Seedlings Grown in Hydroponic and Soil Systems Using the Bengal and Assam Aus Panel.	Front Plant Sci	11	576479	2020		
48951	33193288		Retraction: A Strain of an Emerging Indian <i>Xanthomonas oryzae</i> pv. oryzae Pathotype Defeats the Rice Bacterial Blight Resistance Gene <i>xa13</i> Without Inducing a Clade III <i>SWEET</i> Gene and Is Nearly Identical to a Recent Thai Isolate.	Front Microbiol	11	609848	2020		
48952	32800251	Cabral Gouveia GC., Galindo F.S., Dantas Bereta Lanza MG., Caroline da Rocha Silva A., Pereira de Brito Mateus M., Souza da Silva M., Rimoldi Tavanti RF., Tavanti T.R., Lavres J., Reis A.R.D.	Selenium toxicity stress-induced phenotypical, biochemical and physiological responses in rice plants: Characterization of symptoms and plant metabolic adjustment.	Ecotoxicol. Environ. Saf.	202	110916	2020		
48953	33023236	Pattnaik S.S., Dash B., Bhuyan S.S., Katara J.L., Parameswaran C., Verma R., Ramesh N., Samantaray S.	Anther Culture Efficiency in Quality Hybrid Rice: A Comparison between Hybrid Rice and Its Ratooned Plants.	Plants (Basel)	9(10)		2020		
48954	33079962	Zhou W., Qi Z., Chen J., Tan Z., Wang H., Wang C., Yi Z.	Rooting ability of rice seedlings increases with higher soluble sugar content from exposure to light.	PLoS ONE	15(10)	e0241060	2020		
48955	33037245	Shamsunnaher, Chen X., Zhang X., Wu X.X., Huang X., Song W.Y.	Rice immune sensor XA21 differentially enhances plant growth and survival under distinct levels of drought.	Sci Rep	10(1)	16938	2020	XA21	Xa21*, Xa21, OsXA21
48956	33193509	Sanchez L., Ermolenkov A., Biswas S., Septiningsih E.M., Kurouski D.	Raman Spectroscopy Enables Non-invasive and Confirmatory Diagnostics of Salinity Stresses, Nitrogen, Phosphorus, and Potassium Deficiencies in Rice.	Front Plant Sci	11	573321	2020		
48957	33114491	Zhou X., Liu L., Li Y., Li K., Liu X., Zhou J., Yang C., Liu X., Fang C., Luo J.	Integrative Metabolomic and Transcriptomic Analyses Reveal Metabolic Changes and Its Molecular Basis in Rice Mutants of the Strigolactone Pathway.	Metabolites	10(11)		2020		
48958	32763954	Bhati K.K., Kruusvee V., Straub D., Chandran A.K.N., Jung K.H., Wenkel S.	Global Analysis of Cereal microProteins Suggests Diverse Roles in Crop Development and Environmental Adaptation.	G3 (Bethesda)	10(10)	3709-3717	2020		
48959	33137932	Zhang S., Li Q., Nazir M.M., Ali S., Ouyang Y., Ye S., Zeng F.	Calcium Plays a Double-Edged Role in Modulating Cadmium Uptake and Translocation in Rice.	Int J Mol Sci	21(21)		2020		
48960	33120987	Chopperla R., Mangrauthia S.K., Bhaskar Rao T., Balakrishnan M., Balachandran S.M., Prakasam V., Channappa G.	A Comprehensive Analysis of MicroRNAs Expressed in Susceptible and Resistant Rice Cultivars during <i>Rhizoctonia solani</i> AG1-IA Infection Causing Sheath Blight Disease.	Int J Mol Sci	21(21)		2020		
48961	33209208	Yao W., Li Y., Xie W., Wang L.	Features of sRNA biogenesis in rice revealed by genetic dissection of sRNA expression level.	Comput Struct Biotechnol J	18	3207-3216	2020		
48962	33193207	Carpenter S.C.D., Mishra P., Ghoshal C., Dash P.K., Wang L., Midha S., Laha G.S., Lore J.S., Kositratana W., Singh N.K., Singh K., Patil P.B., Oliva R., Patarapuwadol S., Bogdanove A.J., Rai R.	An <i>xa5</i> Resistance Gene-Breaking Indian Strain of the Rice Bacterial Blight Pathogen <i>Xanthomonas oryzae</i> pv. oryzae Is Nearly Identical to a Thai Strain.	Front Microbiol	11	579504	2020		
48963	33057376	Singh U.M., Sinha P., Dixit S., Abbai R., Venkateshwarlu C., Chitikineni A., Singh V.K., Varshney R.K., Kumar A.	Unraveling candidate genomic regions responsible for delayed leaf senescence in rice.	PLoS ONE	15(10)	e0240591	2020		
48964	33066550	Ma M., Cen W., Li R., Wang S., Luo J.	The Molecular Regulatory Pathways and Metabolic Adaptation in the Seed Germination and Early Seedling Growth of Rice in Response to Low O2 Stress.	Plants (Basel)	9(10)		2020		
48965	33017406	Colorado J.D., Calderon F., Mendez D., Petro E., Rojas J.P., Correa E.S., Mondragon I.F., Rebolledo M.C., Jaramillo-Botero A.	A novel NIR-image segmentation method for the precise estimation of above-ground biomass in rice crops.	PLoS ONE	15(10)	e0239591	2020		
48966	33143090	Subudhi P.K., Garcia R.S., Coronejo S., De Leon TB.	A Novel Mutation of the <i>NARROW LEAF 1</i> Gene Adversely Affects Plant Architecture in Rice (<i>Oryza sativa</i> L.).	Int J Mol Sci	21(21)		2020		
48967	33052473	Yang L., Lei L., Liu H., Wang J., Zheng H., Zou D.	Whole-genome mining of abiotic stress gene loci in rice.	Planta	252(5)	85	2020		
48968	33019599	Seong S.Y., Shim J.S., Bang S.W., Kim J.K.	Overexpression of <i>OsC3H10</i>, a CCCH-Zinc Finger, Improves drought tolerance in Rice by Regulating Stress-Related Genes.	Plants (Basel)	9(10)		2020		
48969	32940908	Mathan J., Singh A., Ranjan A.	Sucrose transport in response to drought and salt stress involves ABA-mediated induction of OsSWEET13 and OsSWEET15 in rice.	Physiol Plant			2020		
48970	32924506	Xu S.M., Sun X.H., Zong W.G., Li Z.R., Li X.Y.	Kinetic Analysis for Reaction of Cyclopentadiene with Hydroperoxyl Radical under Low- and Medium-Temperature Combustion.	J Phys Chem A	124(40)	8280-8291	2020		
48971	32974681	Kawakami Y., Bhullar N.K.	Delineating the future rice Fe biofortification studies - overview of challenges and future perspectives.	J. Exp. Bot.			2020		
48972	32889310	Wang K., Li Y., Wu Y., Qiu Z., Ding Z., Wang X., Chen W., Wang R., Fu F., Rensing C., Yang G.	Improved grain yield and lowered arsenic accumulation in rice plants by inoculation with arsenite-oxidizing Achromobacter xylosoxidans GD03.	Ecotoxicol. Environ. Saf.	206	111229	2020		
48973	32970268	Wang Y., Lu Y., Guo Z., Ding Y., Ding C.	RICE CENTRORADIALIS 1, a TFL1-like Gene, Responses to Drought Stress and Regulates Rice Flowering Transition.	Rice (N Y)	13(1)	70	2020		
48974	32890925	Yu H., Wu Y., Huang H., Zhan J., Wang K., Li T.	The predominant role of pectin in binding Cd in the root cell wall of a high Cd accumulating rice line (Oryza sativa L.).	Ecotoxicol. Environ. Saf.	206	111210	2020		
48975	32977281	Zhang M., Pang Y., Yi Q., Huang J., Huang X., Huang Q., Xu P., Tang S.	Comparative effectiveness of Se translocation between low-Se and high-Se rice cultivars under Se fertilization.	Ecotoxicol. Environ. Saf.	205	111372	2020		
48976	32877452	Deng J., Feng X., Wang D., Lu J., Chong H., Shang C., Liu K., Huang L., Tian X., Zhang Y.	Root morphological traits and distribution in?direct-seeded?rice under?dense?planting with reduced?nitrogen.	PLoS ONE	15(9)	e0238362	2020		
48977	32928900	Krishnamurthy P., Vishal B., Ho W.J., Lok F.C.J., Lee F.S.M., Kumar P.P.	Regulation of a cytochrome P450 gene <i>CYP94B1</i> by WRKY33 Transcription Factor Controls Apoplastic Barrier Formation in Roots to Confer salt tolerance.	Plant Physiol.	184(4)	2199-2215	2020		
48978	32815313	Silva-Brand?o KL., Murad N.F., Peruchi A., Martins C.H.Z., Omoto C., Figueira A., Brand?o MM., Trigo J.R.	Transcriptome differential co-expression reveals distinct molecular response of fall-armyworm strains to DIMBOA.	Pest Manag. Sci.	77(1)	518-526	2021		
48979	32945115	Yang Q.Q., Yu W.H., Wu H.Y., Zhang C.Q., Sun S.S., Liu Q.Q.	Lysine biofortification in rice by modulating feedback inhibition of aspartate kinase and dihydrodipicolinate synthase.	Plant Biotechnol. J.			2020		
48980	32882811	Zhu J., Zhu K., Li L., Li Z., Qin W., Park Y., He Y.	Proteomics of the Honeydew from the Brown Planthopper and Green Rice Leafhopper Reveal They Are Rich in Proteins from Insects, Rice Plant and Bacteria.	Insects	11(9)		2020		
48981	32986761	Kaur A., Pati P.K., Pati A.M., Nagpal A.K.	Physico-chemical characterization and topological analysis of pathogenesis-related proteins from Arabidopsis thaliana and Oryza sativa using in-silico approaches.	PLoS ONE	15(9)	e0239836	2020		
48982	32895765	Qiu J., Lu F., Xiong M., Meng S., Shen X., Kou Y.	Comparative transcriptomic analysis reveals the mechanistic basis of Pib-mediated broad spectrum resistance against Magnaporthe oryzae.	Funct. Integr. Genomics	20(6)	787-799	2020		
48983	32916530	Tiwari P., Srivastava D., Chauhan A.S., Indoliya Y., Singh P.K., Tiwari S., Fatima T., Mishra S.K., Dwivedi S., Agarwal L., Singh P.C., Asif M.H., Tripathi R.D., Shirke P.A., Chakrabarty D., Chauhan P.S., Nautiyal C.S.	root system architecture, physiological analysis and dynamic transcriptomics unravel the drought-responsive traits in rice genotypes.	Ecotoxicol. Environ. Saf.	207	111252	2021		
48984	32880855	Zhang W., Sun Y., Liu J., Xu C., Zou X., Chen X., Liu Y., Wu P., Yang X., Zhou S.	DNA barcoding of Oryza: conventional, specific, and super barcodes.	Plant Mol. Biol.			2020		
48985	32913358	Yu Y., Woo M.O., Rihua P., Koh H.J.	The drooping leaf (DR) gene encoding GDSL esterase is involved in silica deposition in rice (Oryza sativa L.).	PLoS ONE	15(9)	e0238887	2020		
48986	32987927	Tarun J.A., Mauleon R., Arbelaez J.D., Catausan S., Dixit S., Kumar A., Brown P., Kohli A., Kretzschmar T.	Comparative Transcriptomics and Co-Expression Networks Reveal Tissue- and Genotype-Specific Responses of <i>qDTYs</i> to Reproductive-Stage Drought Stress in Rice (<i>Oryza sativa</i> L.).	Genes (Basel)	11(10)		2020		
48987	32858766	Dhatt B.K., Paul P., Sandhu J., Hussain W., Irvin L., Zhu F., Adviento-Borbe MA., Lorence A., Staswick P., Yu H., Morota G., Walia H.	Allelic variation in rice Fertilization Independent Endosperm 1 contributes to grain width under high night temperature stress.	New Phytol.	229(1)	335-350	2021		
48988	32949368	Xiong E., Dong G., Chen F., Zhang C., Li S., Zhang Y., Shohag J.I., Yang X., Zhou Y., Qian Q., Wu L., Yu Y.	Formyl tetrahydrofolate deformylase affects hydrogen peroxide accumulation and leaf senescence by regulating the folate status and redox homeostasis in rice.	Sci China Life Sci			2020		
48989	32976903	Wang Z., Hong J., Ma S., Huang T., Ma Y., Liu W., Liu W., Liu Z., Song H.	Heterologous expression of EUGT11 from Oryza sativa in Pichia pastoris for highly efficient one-pot production of rebaudioside D from rebaudioside A.	Int. J. Biol. Macromol.	163	1669-1676	2020	UGT91C1	OsUGT91C1, EUGT11, OsEUGT11
48990	32920313	Jiang D., Hou J., Gao W., Tong X., Li M., Chu X., Chen G.	Exogenous spermidine alleviates the adverse effects of aluminum toxicity on photosystem II through improved antioxidant system and endogenous polyamine contents.	Ecotoxicol. Environ. Saf.	207	111265	2021		
48991	32966570	Duan M., Ke X.J., Lan H.X., Yuan X., Huang P., Xu E.S., Gao X.Y., Wang R.Q., Tang H.J., Zhang H.S., Huang J.	A Cys2/His2 zinc finger protein acts as a repressor of green revolution gene SD1/OsGA20ox2 in rice (Oryza sativa L.).	Plant Cell Physiol.			2020		
48992	32887905	Yadav A.K., Kumar A., Grover N., Ellur R.K., Krishnan S.G., Bollinedi H., Bhowmick P.K., Vinod K.K., Nagarajan M., Krishnamurthy S.L., Singh A.K.	Marker aided introgression of 'Saltol', a major QTL for seedling stage salinity tolerance into an elite Basmati rice variety 'Pusa Basmati 1509'.	Sci Rep	10(1)	13877	2020		
48993	32939540	Chakraborty K., Guru A., Jena P., Ray S., Guhey A., Chattopadhyay K., Sarkar R.K.	Rice with SUB1 QTL possesses greater initial leaf gas film thickness leading to delayed perception of submergence stress.	Ann. Bot.			2020		
48994	32902771	Zhang L., Ma B., Bian Z., Li X., Zhang C., Liu J., Li Q., Liu Q., He Z.	grain size Selection Using Novel Functional Markers Targeting 14 Genes in Rice.	Rice (N Y)	13(1)	63	2020		
48995	33024905	Singh D.K., Mehra S., Chatterjee S., Purty R.S.	In silico identification and validation of miRNA and their DIR specific targets in <i>Oryza sativa</i> Indica under abiotic stress.	Noncoding RNA Res	5(4)	167-177	2020		
48996	33072142	Li J., Zhou J., Zhang Y., Yang Y., Pu Q., Tao D.	New Insights Into the Nature of Interspecific hybrid sterility in Rice.	Front Plant Sci	11	555572	2020	S28,S20,S22,S23,S27,RPL27-1,SA,S56,S25,S36,S21,S1,S51,S55,S39,S1A6,S53,TP1,SE,S1A4,S22B,RPL27-2,S7,S22A,S54	S28(t), rpl27-3, rpl27, mtRPL27a,S20*, Hst43,S22(t),S23(t),S27(t), S27(t)*,rpl27-1, rpl27, mtRPL27b, S27, S27(t), S27(t)*,Sa*, S-a, Hst16,S56(t) ,S25(t), S25(t)*,,S21*, Hst44,,S51(t),S55(t),S39(t),,S53(t),OsTP1, S1TP, OgTPR1, S1TPR,Se*, S-e, Hst20,,S22(t), S22B,rpl27-2, rpl27, mtRPL27a, S27, S27(t), S27(t)*,S7,S22(t), S22A,S54(t)
48997	33088191	Suketomo C., Kazama T., Toriyama K.	Fertility restoration of Chinese wild rice-type cytoplasmic male sterility by CRISPR/Cas9-mediated genome editing of nuclear-encoded <i>RETROGRADE-REGULATED male sterility</i>.	Plant Biotechnol (Tokyo)	37(3)	285-292	2020		
48998	33088189	Kabir M., Haruki N., Rajagopalan U., Umehara M., Kadono H.	Nanometer accuracy statistical interferometric technique in monitoring the short-term effects of exogenous plant hormones, auxin and gibberellic acid, on rice plants.	Plant Biotechnol (Tokyo)	37(3)	261-271	2020		
48999	32962231	Macharoen K., Li Q., M?rquez-Escobar VA., Corbin J.M., Lebrilla C.B., Nandi S., McDonald K.A.	Effects of Kifunensine on Production and <i>N</i>-Glycosylation Modification of Butyrylcholinesterase in a Transgenic Rice Cell Culture Bioreactor.	Int J Mol Sci	21(18)		2020		
49000	32920948	Samanta S., Banerjee A., Roychoudhury A.	Melatonin application differentially modulates the enzymes associated with antioxidative machinery and ascorbate-glutathione cycle during arsenate exposure in indica rice varieties.	Plant Biol (Stuttg)			2020		
49001	32899939	Cho Y.G., Kang K.K.	Functional Analysis of Starch Metabolism in Plants.	Plants (Basel)	9(9)		2020		
49002	32967563	Wang W., Su J., Chen K., Yang J., Chen S., Wang C., Feng A., Wang Z., Wei X., Zhu X., Lu G.D., Zhou B.	Dynamics of the rice blast fungal population in the field after deployment of an improved rice variety containing known resistance genes.	Plant Dis.			2020		
49003	32938958	Dolui A.K., Vijayakumar A.K., Rajasekharan R., Vijayaraj P.	Activity-based protein profiling of rice (Oryza sativa L.) bran serine hydrolases.	Sci Rep	10(1)	15191	2020		
49004	32873317	Yang X., Cheema J., Zhang Y., Deng H., Duncan S., Umar M.I., Zhao J., Liu Q., Cao X., Kwok C.K., Ding Y.	RNA G-quadruplex structures exist and function in vivo in plants.	Genome Biol.	21(1)	226	2020		
49005	32979167	Nivedita, Gazara R.K., Khan S., Iqrar S., Ashrafi K., Abdin M.Z.	Comparative transcriptome profiling of rice colonized with beneficial endophyte, Piriformospora indica, under high salinity environment.	Mol. Biol. Rep.	47(10)	7655-7673	2020		
49006	33007539	Yan F., Wei H., Li W., Liu Z., Tang S., Chen L., Ding C., Jiang Y., Ding Y., Li G.	Melatonin improves K+ and Na+ homeostasis in rice under salt stress by mediated nitric oxide.	Ecotoxicol. Environ. Saf.	206	111358	2020		
49007	32937792	Bhuvaneswari S., Gopala Krishnan S., Ellur R.K., Vinod K.K., Bollinedi H., Bhowmick P.K., Bansal V.P., Nagarajan M., Singh A.K.	Discovery of a Novel Induced Polymorphism in <i>SD</i>1 Gene Governing Semi-Dwarfism in Rice and Development of a Functional Marker for Marker-Assisted Selection.	Plants (Basel)	9(9)		2020		
49008	33288006	Takaiwa F., Wakasa Y., Ozawa K., Sekikawa K.	Improvement of production yield and extraction efficacy of recombinant protein by high endosperm-specific expression along with simultaneous suppression of major seed storage proteins.	Plant Sci.	302	110692	2021		
49009	33015150	Peng Y., Zhang X., Liu Y., Chen X.	Exploring Heat-Response Mechanisms of MicroRNAs Based on Microarray Data of Rice Post-meiosis Panicle.	International Journal of Genomics	2020	7582612	2020		
49010	32896629	Sahu A., Das A., Saikia K., Barah P.	Temperature differentially modulates the transcriptome response in Oryza sativa to Xanthomonas oryzae pv. oryzae infection.	Genomics	112(6)	4842-4852	2020		
49011	32860233	Huang S., Ma J.F.	Silicon suppresses zinc uptake through down-regulating zinc transporter gene in rice.	Physiol Plant	170(4)	580-591	2020		
49012	32908195	Li Y., Liang L., Fu X., Gao Z., Liu H., Tan J., Potcho M.P., Pan S., Tian H., Duan M., Tang X., Mo Z.	Light and water treatment during the early grain filling stage regulates yield and aroma formation in aromatic rice.	Sci Rep	10(1)	14830	2020		
49013	32977500	Iwasaki Y., Itoh T., Hagi Y., Matsuta S., Nishiyama A., Chaya G., Kobayashi Y., Miura K., Komatsu S.	Proteomics Analysis of Plasma Membrane Fractions of the Root, Leaf, and Flower of Rice.	Int J Mol Sci	21(19)		2020		
49014	32998689	Yadav S.K., Santosh Kumar VV., Verma R.K., Yadav P., Saroha A., Wankhede D.P., Chaudhary B., Chinnusamy V.	Genome-wide identification and characterization of ABA receptor PYL gene family in rice.	BMC Genomics	21(1)	676	2020		
49015	32980467	Divya K., Thampi M., Vijayan S., Varghese S., Jisha M.S.	Induction of defence response in Oryza sativa L. against Rhizoctonia solani (Kuhn) by chitosan nanoparticles.	Microb. Pathog.	149	104525	2020		
49016	33110955	Park J.E., Jeong Y.J., Kim H.Y., Yoo Y.H., Lee K.S., Yang W.T., Kim D.H., Kim J.M.	Hepatic Steatosis Alleviated in Diabetic Mice upon Dietary Exposure to Fibroin via Transgenic Rice: Potential STAMP2 Involvement in Hepatocytes.	Dev Reprod	24(3)	231-239	2020		
49017	32963594	Lee A.Y., Choi J.M., Lee Y.A., Shin S.H., Cho E.J.	Beneficial effect of black rice ( <b>          <i>Oryza sativa</i>        </b><i>L</i>. var. <b>          <i>japonica</i>        </b> ) extract on amyloid beta-induced cognitive dysfunction in a mouse model.	Exp Ther Med	20(5)	64	2020		
49018	32905587	Foo C.C., Burgess A.J., Retkute R., Tree-Intong P., Ruban A.V., Murchie E.H.	Photoprotective energy dissipation is greater in the lower, not the upper regions of a rice canopy: a 3D analysis.	J. Exp. Bot.			2020		
49019	32930909	Grover N., Kumar A., Yadav A.K., Gopala Krishnan S., Ellur R.K., Bhowmick P.K., Vinod K.K., Bollinedi H., Nagarajan M., Viswanathan C., Sevanthi A.M.V., Singh N.K., Mohapatra T., Singh A.K.	Marker Assisted Development and Characterization of Herbicide Tolerant Near Isogenic Lines of a Mega Basmati Rice Variety, "Pusa Basmati 1121".	Rice (N Y)	13(1)	68	2020		
49020	32947963	Iqbal I., Tripathi R.K., Wilkins O., Singh J.	<i>Thaumatin-Like Protein</i> (<i>TLP</i>) Gene Family in Barley: Genome-Wide Exploration and Expression Analysis during Germination.	Genes (Basel)	11(9)		2020		
49021	32890949	Dang C., Zhou X., Sun C., Wang F., Peng Y., Ye G.	Impacts of Bt rice on non-target organisms assessed by the hazard quotient (HQ).	Ecotoxicol. Environ. Saf.	207	111214	2021		
49022	32918256	Jiang W., Zhou S., Huang H., Song H., Zhang Q., Zhao Y.	MERISTEM ACTIVITYLESS (MAL) is involved in root development through maintenance of meristem size in rice.	Plant Mol. Biol.	104(4-5)	499-511	2020	MAL	HRD1, OsHrd1, Hrd1, OsMAL,  OsRING9, RING9
49023	32934280	Deveshwar P., Sharma S., Prusty A., Sinha N., Zargar S.M., Karwal D., Parashar V., Singh S., Tyagi A.K.	Analysis of rice nuclear-localized seed-expressed proteins and their database (RSNP-DB).	Sci Rep	10(1)	15116	2020		
49024	32986755	Raza Q., Riaz A., Saher H., Bibi A., Raza M.A., Ali S.S., Sabar M.	Grain Fe and Zn contents linked SSR markers based genetic diversity in rice.	PLoS ONE	15(9)	e0239739	2020		
49025	32971998	Fern?ndez-Llamosas H., Ibero J., Thijs S., Imperato V., Vangronsveld J., D?az E., Carmona M.	Enhancing the Rice Seedlings Growth Promotion Abilities of <i>Azoarcus</i> sp. CIB by Heterologous Expression of ACC Deaminase to Improve Performance of Plants Exposed to Cadmium Stress.	Microorganisms	8(9)		2020		
49026	33218634	Lucob-Agustin N., Sugiura D., Kano-Nakata M., Hasegawa T., Suralta R.R., Niones J.M., Inari-Ikeda M., Yamauchi A., Inukai Y.	The promoted lateral root 1 (plr1) mutation is involved in reduced basal shoot starch accumulation and increased root sugars for enhanced lateral root growth in rice.	Plant Sci.	301	110667	2020		
49027	32910281	Cheng A.P., Chen S.Y., Lai M.H., Wu D.H., Lin S.S., Chen C.Y., Chung C.L.	Transcriptome Analysis of Early Defenses in Rice against Fusarium fujikuroi.	Rice (N Y)	13(1)	65	2020		
49028	32901332	Zhang N., Wang M., Fu J., Shen Y., Ding Y., Wu D., Shu X., Song W.	Identifying genes for resistant starch, slowly digestible starch, and rapidly digestible starch in rice using genome-wide association studies.	Genes Genomics	42(11)	1227-1238	2020		
49029	32971164	Li H., Zhou Z., Hua H., Ma W.	Comparative transcriptome analysis of defense response of rice to Nilaparvata lugens and Chilo suppressalis infestation.	Int. J. Biol. Macromol.	163	2270-2285	2020		
49030	33101344	Hu Y., Mao B., Xia Y., Peng Y., Zhang D., Tang L., Shao Y., Li Y., Zhao B.	Spike-Stalk Injection Method Causes Extensive Phenotypic and Genotypic Variations for Rice Germplasm.	Front Plant Sci	11	575373	2020		
49031	32972357	Liu S., Zhong H., Meng X., Sun T., Li Y., Pinson S.R.M., Chang S.K.C., Peng Z.	Genome-wide association studies of ionomic and agronomic traits in USDA mini core collection of rice and comparative analyses of different mapping methods.	BMC Plant Biol.	20(1)	441	2020		
49032	32932873	Gil-Ortiz R., Naranjo M?., Ruiz-Navarro A., Atares S., Garc?a C., Zotarelli L., San Bautista A., Vicente O.	Enhanced Agronomic Efficiency Using a New Controlled-Released, Polymeric-Coated Nitrogen Fertilizer in Rice.	Plants (Basel)	9(9)		2020		
49033	32748677	Read A.C., Hutin M., Moscou M.J., Rinaldi F.C., Bogdanove A.J.	Cloning of the Rice <i>Xo1</i> Resistance Gene and Interaction of the Xo1 Protein with the Defense-Suppressing <i>Xanthomonas</i> Effector Tal2h.	Mol. Plant Microbe Interact.	33(10)	1189-1195	2020		
49034	32913300	Li F., Komatsu A., Ohtake M., Eun H., Shimizu A., Kato H.	Direct identification of a mutation in OsSh1 causing non-shattering in a rice (Oryza sativa L.) mutant cultivar using whole-genome resequencing.	Sci Rep	10(1)	14936	2020		
49035	32960916	Hada A., Dutta T.K., Singh N., Singh B., Rai V., Singh N.K., Rao U.	A genome-wide association study in Indian wild rice accessions for resistance to the root-knot nematode Meloidogyne graminicola.	PLoS ONE	15(9)	e0239085	2020		
49036	33033578	Islam M.M., Sandhu J., Walia H., Saha R.	Transcriptomic data-driven discovery of global regulatory features of rice seeds developing under heat stress.	Comput Struct Biotechnol J	18	2556-2567	2020		
49037	33029032	Dimaano N.G.B., Ali J., Mahender A., Sta Cruz PC., Baltazar A.M., Diaz M.G.Q., Pang Y.L., Acero B.L., Li Z.	Identification of quantitative trait loci governing early germination and seedling vigor traits related to weed competitive ability in rice.	Euphytica	216(10)	159	2020		
49038	32931489	Zdrza?ek R., Kamoun S., Terauchi R., Saitoh H., Banfield M.J.	The rice NLR pair Pikp-1/Pikp-2 initiates cell death through receptor cooperation rather than negative regulation.	PLoS ONE	15(9)	e0238616	2020		
49039	32777163	Ferguson J.N., McAusland L., Smith K.E., Price A.H., Wilson Z.A., Murchie E.H.	Rapid temperature responses of photosystem?II efficiency forecast genotypic variation in rice vegetative heat tolerance.	Plant J.	104(3)	839-855	2020		
49040	32989601	Chakraborty S., Yengkhom S., Uddin A.	Analysis of codon usage bias of chloroplast genes in Oryza species : Codon usage of chloroplast genes in Oryza species.	Planta	252(4)	67	2020		
49041	33088044	Sahoo S., Sanghamitra P., Nanda N., Pawar S., Pandit E., Bastia R., Muduli K.C., Pradhan S.K.	Association of molecular markers with physio-biochemical traits related to seed vigour in rice.	Physiol Mol Biol Plants	26(10)	1989-2003	2020		
49042	32931392	Zhou X.S., Kumar K.V.K., Zhou L.W., Reddy M.S., Kloepper J.W.	Combined Use of PGPR and Reduced Rates of Azoxystrobin to Improve Management of Sheath Blight of Rice.	Plant Dis.			2020		
49043	33233281	Li D., Huang Y., Tao Y., Xu E., Zhang R., Han Y.	Effect of metal salts on alpha-amylase-catalyzed hydrolysis of broken rice under a moderate electric field.	Food Res. Int.	137	109707	2020		
49044	33345505	Li Y.D., Ye C., Cao Z.S., Sun B.F., Shu S.F., Huang J.B., Tian Y.C., He Y.	[Monitoring leaf nitrogen concentration and nitrogen accumulation of double cropping rice based on crop growth monitoring and diagnosis apparatus].	Ying Yong Sheng Tai Xue Bao	31(9)	3040-3050	2020		
49045	33101324	Khan A., Wang Z., Xu K., Li L., He L., Hu H., Wang G.	Validation of an Enzyme-Driven Model Explaining photosynthetic rate Responses to Limited Nitrogen in Crop Plants.	Front Plant Sci	11	533341	2020		
49046	32975743	Izadi-Darbandi A., Younessi-Hamzekhanlu M., Sticklen M.	Metabolically engineered rice biomass and grain using genes associated with lipid pathway show high level of oil content.	Mol. Biol. Rep.	47(10)	7917-7927	2020		
49047	32966859	Wang A., Zha Z., Yin D., Shu X., Ma L., Wang L., Li P., Zheng A.	Comparative transcriptome analysis of Tilletia horrida infection in resistant and susceptible rice (Oryza sativa L.) male sterile lines reveals potential candidate genes and resistance mechanisms.	Genomics	112(6)	5214-5226	2020		
49048	33013985	Zhai K., Zhao G., Jiang H., Sun C., Ren J.	Overexpression of Maize <i>ZmMYB59</i> Gene Plays a Negative Regulatory Role in Seed Germination in <i>Nicotiana tabacum</i> and <i>Oryza sativa</i>.	Front Plant Sci	11	564665	2020		
49049	32886707	Shultana R., Kee Zuan AT., Yusop M.R., Saud H.M.	Characterization of salt-tolerant plant growth-promoting rhizobacteria and the effect on growth and yield of saline-affected rice.	PLoS ONE	15(9)	e0238537	2020		
49050	32909184	Senoura T., Kobayashi T., An G., Nakanishi H., Nishizawa N.K.	Defects in the rice aconitase-encoding OsACO1 gene alter iron homeostasis.	Plant Mol. Biol.	104(6)	629-645	2020	_,_	OsACO1, ACO1, OsACO2, ACO2,OsACO1, ACO1,
49051	32995698	Mathew I.E., Priyadarshini R., Mahto A., Jaiswal P., Parida S.K., Agarwal P.	SUPER STARCHY1/ONAC025 participates in rice grain filling.	Plant Direct	4(9)	e00249	2020		
49052	32886440	Zhang C., Yang Y., Chen S., Liu X., Zhu J., Zhou L., Lu Y., Li Q., Fan X., Tang S., Gu M., Liu Q.	A rare Waxy allele coordinately improves rice eating and cooking quality and grain transparency.	J Integr Plant Biol			2020		
49053	32937908	Sani Haliru B., Rafii M.Y., Mazlan N., Ramlee S.I., Muhammad I., Silas Akos I., Halidu J., Swaray S., Rini Bashir Y.	Recent Strategies for Detection and Improvement of Brown Planthopper Resistance Genes in Rice: A Review.	Plants (Basel)	9(9)		2020		
49054	32886450	Zhou H., Xia D., Zhao D., Li Y., Li P., Wu B., Gao G., Zhang Q., Wang G., Xiao J., Li X., Yu S., Lian X., He Y.	The origin of Wxla provides new insights into the improvement of grain quality in rice.	J Integr Plant Biol			2020		
49055	33124303	Hu Y.D., Zhou H., Gu J.F., Huo Y., Deng P.H., Wei B.Y., Liu J., Liao B.H.	[Key Growth Stage of Pb Accumulation in Rice Through a Hydroponic Experiment with Pb Stress].	Huan Jing Ke Xue	41(9)	4218-4225	2020		
49056	32903256	Zha W., You A.	Comparative iTRAQ proteomic profiling of proteins associated with the adaptation of brown planthopper to moderately resistant vs. susceptible rice varieties.	PLoS ONE	15(9)	e0238549	2020		
49057	32948036	Yemelyanov V.V., Chirkova T.V., Shishova M.F., Lindberg S.M.	Potassium Efflux and Cytosol Acidification as Primary Anoxia-Induced Events in Wheat and Rice Seedlings.	Plants (Basel)	9(9)		2020		
49058	33013960	Qin M., Zhang Y., Yang Y., Miao C., Liu S.	Seed-Specific Overexpression of <i>SPL12</i> and <i>IPA1</i> Improves seed dormancy and grain size in Rice.	Front Plant Sci	11	532771	2020		
49059	32918570	Viswanath G., Sekar J., Ramalingam P.V.	Detection of Diverse N-Acyl Homoserine Lactone Signalling Molecules Among Bacteria Associated with Rice Rhizosphere.	Curr. Microbiol.	77(11)	3480-3491	2020		
49060	32985595	Campo S., San Segundo B.	Systemic induction of phosphatidylinositol-based signaling in leaves of arbuscular mycorrhizal rice plants.	Sci Rep	10(1)	15896	2020		
49061	32940717	Wang Z.L., Pan H.B., Wu W., Li M.Y., Yu X.P.	The gut bacterial flora associated with brown planthopper is affected by host rice varieties.	Arch. Microbiol.			2020		
49062	32936396	Cubry P., Pidon H., Ta K.N., Tranchant-Dubreuil C., Thuillet A.C., Holzinger M., Adam H., Kam H., Chrestin H., Ghesqui?re A., Fran?ois O., Sabot F., Vigouroux Y., Albar L., Jouannic S.	Genome Wide Association Study Pinpoints Key Agronomic QTLs in African Rice Oryza glaberrima.	Rice (N Y)	13(1)	66	2020		
49063	33218635	Yang J., Yang M., Su L., Zhou D., Huang C., Wang H., Guo T., Chen Z.	Genome-wide association study reveals novel genetic loci contributing to cold tolerance at the germination stage in indica rice.	Plant Sci.	301	110669	2020		
49064	32910958	Zhao L., Pan F., Mehmood A., Zhang Y., Hao S., Rehman A.U., Li J., Wang C., Wang Y.	Protective effect and mechanism of action of xanthan gum on the color stability of black rice anthocyanins in model beverage systems.	Int. J. Biol. Macromol.	164	3800-3807	2020		
49065	32973913	Anandan A., Mahender A., Sah R.P., Bose L.K., Subudhi H., Meher J., Reddy J.N., Ali J.	Non-destructive phenotyping for early seedling vigor in direct-seeded rice.	Plant Methods	16	127	2020		
49066	32941524	Wu C.C., Wei F.J., Chiou W.Y., Tsai Y.C., Wu H.P., Gotarkar D., Wei Z.H., Lai M.H., Hsing Y.C.	Studies of rice Hd1 haplotypes worldwide reveal adaptation of flowering time to different environments.	PLoS ONE	15(9)	e0239028	2020		
49067	33013996	Yang X., Cui J., Song B., Yu Y., Mo B., Liu L.	Construction of High-Quality Rice Ribosome Footprint Library.	Front Plant Sci	11	572237	2020		
49068	32961657	Lee J.S., Hay F.R.	Variation in Seed Metabolites between Two Indica Rice Accessions Differing in Seed Longevity.	Plants (Basel)	9(9)		2020		
49069	32905932	Wang F., Tan H., Huang L., Cai C., Ding Y., Bao H., Chen Z., Zhu C.	Application of exogenous salicylic acid reduces Cd toxicity and Cd accumulation in rice.	Ecotoxicol. Environ. Saf.	207	111198	2021		
49070	32985689	Wang R., Liu C., Chen Z., Sun S., Wang X.	Oryza sativa LIGULELESS 2s determine lamina joint positioning and differentiation by inhibiting auxin signaling.	New Phytol.			2020		
49071	32915830	Cao Y., Jiang K., Wu J., Yu F., Du W., Xu T.	Inversion modeling of japonica rice canopy chlorophyll content with UAV hyperspectral remote sensing.	PLoS ONE	15(9)	e0238530	2020		
49072	32886328	Vasumathy S.K., Peringottillam M., Sundaram K.T., Kumar S.H.K., Alagu M.	Genome- wide structural and functional variant discovery of rice landraces using genotyping by sequencing.	Mol. Biol. Rep.	47(10)	7391-7402	2020		
49073	32961678	Hong W.J., Jiang X., Ahn H.R., Choi J., Kim S.R., Jung K.H.	Systematic Analysis of Cold Stress Response and Diurnal Rhythm Using Transcriptome Data in Rice Reveals the Molecular Networks Related to Various Biological Processes.	Int J Mol Sci	21(18)		2020		
49074	32952543	Xu Z., Guo X., Zhu A., He X., Zhao X., Han Y., Subedi R.	Using Deep Convolutional Neural Networks for Image-Based Diagnosis of Nutrient Deficiencies in Rice.	Comput Intell Neurosci	2020	7307252	2020		
49075	32964370	Pachamuthu K., Swetha C., Basu D., Das S., Singh I., Sundar V.H., Sujith T.N., Shivaprasad P.V.	Rice-specific Argonaute 17 controls reproductive growth and yield-associated phenotypes.	Plant Mol. Biol.	105(1-2)	99-114	2021		
49076	33013986	Khan F., Hussain S., Khan S., Geng M.	Seed Priming Improved Antioxidant Defense System and Alleviated Ni-Induced Adversities in Rice Seedlings Under N, P, or K Deprivation.	Front Plant Sci	11	565647	2020		
49077	32835886	Wang J.Y., Jamil M., Lin P.Y., Ota T., Fiorilli V., Novero M., Zarban R.A., Kountche B.A., Takahashi I., Mart?nez C., Lanfranco L., Bonfante P., de Lera AR., Asami T., Al-Babili S.	Efficient Mimics for Elucidating Zaxinone Biology and Promoting Agricultural Applications.	Mol Plant	13(11)	1654-1661	2020		
49078	32740822	Li J., Li L., Zhang L., Zhang X., Li X., Zhai S., Gao H., Li Y., Wu G., Wu Y.	Development of a certified genomic DNA reference material for detection and quantification of genetically modified rice KMD.	Anal Bioanal Chem	412(25)	7007-7016	2020		
49079	32943820	Sagar A., Sayyed R.Z., Ramteke P.W., Sharma S., Marraiki N., Elgorban A.M., Syed A.	ACC deaminase and antioxidant enzymes producing halophilic <i>Enterobacter</i> sp. PR14 promotes the growth of rice and millets under salinity stress.	Physiol Mol Biol Plants	26(9)	1847-1854	2020		
49080	32814279	Wang B., Zhang M., Zhang J., Huang L., Chen X., Jiang M., Tan M.	Profiling of rice Cd-tolerant genes through yeast-based cDNA library survival screening.	Plant Physiol. Biochem.	155	429-436	2020		
49081	32804040	Aslam H.M.U., Naveed K., Hussain S.I., Shakeel Q., Ashraf W., Anwaar H.A., Raza M.M., Sarfraz S., Tariq I.	First report of brown leaf spot of rice caused by Bipolaris zeicola in Pakistan.	Plant Dis.			2020		
49082	32817194	Dolui A.K., Vijayaraj P.	Functional Omics Identifies Serine Hydrolases That Mobilize Storage Lipids during Rice Seed Germination.	Plant Physiol.	184(2)	693-708	2020		
49083	32777350	Jing R., Li N., Wang W., Liu Y.	An endophytic strain JK of genus bacillus isolated from the seeds of super hybrid rice (Oryza sativa L., Shenliangyou 5814) has antagonistic activity against rice blast pathogen.	Microb. Pathog.	147	104422	2020		
49084	32772129	Maeda S., Yokotani N., Oda K., Mori M.	Enhanced resistance to fungal and bacterial diseases in tomato and Arabidopsis expressing BSR2 from rice.	Plant Cell Rep.	39(11)	1493-1503	2020		
49085	32866788	Iwamoto M.	The transcription factor gene RDD1 promotes carbon and nitrogen transport and photosynthesis in rice.	Plant Physiol. Biochem.	155	735-742	2020		
49086	32757080	Zhang C., Yuan Z., Wang Y., Sun W., Tang X., Sun Y., Yu S.	Genetic Dissection of seed dormancy in Rice (Oryza sativa L.) by Using Two Mapping Populations Derived from Common Parents.	Rice (N Y)	13(1)	52	2020		
49087	32386058	Wang L., Lam P.Y., Lui A.C.W., Zhu F.Y., Chen M.X., Liu H., Zhang J., Lo C.	Flavonoids are indispensable for complete male fertility in rice.	J. Exp. Bot.	71(16)	4715-4728	2020		
49088	32867689	Yang J., Su L., Li D., Luo L., Sun K., Yang M., Gu F., Xia A., Liu Y., Wang H., Chen Z., Guo T.	Dynamic transcriptome and metabolome analyses of two types of rice during the seed germination and young seedling growth stages.	BMC Genomics	21(1)	603	2020		
49089	32784493	Petitot A.S., Dereeper A., Da Silva C., Guy J., Fernandez D.	Analyses of the Root-Knot Nematode (<i>Meloidogyne graminicola</i>) Transcriptome during Host Infection Highlight Specific Gene Expression Profiling in Resistant Rice Plants.	Pathogens	9(8)		2020		
49090	32833149	Ren R.J., Wang P., Wang L.N., Su J.P., Sun L.J., Sun Y., Chen D.F., Chen X.W.	Os4BGlu14, a monolignol beta-glucosidase, negatively affects seed longevity by influencing primary metabolism in rice.	Plant Mol. Biol.	104(4-5)	513-527	2020		
49091	32777168	Hsieh P.H., Chung Y.H., Lee K.T., Wang S.Y., Lu C.A., Hsieh M.H.	The rice PALE1 homolog is involved in the biosynthesis of vitamin B1.	Plant Biotechnol. J.			2020		
49092	32842674	Yuan R., Zhao N., Usman B., Luo L., Liao S., Qin Y., Nawaz G., Li R.	Development of Chromosome Segment Substitution Lines (CSSLs) Derived from Guangxi Wild Rice (<i>Oryza rufipogon</i> Griff.) under Rice (<i>Oryza sativa</i> L.) Background and the Identification of QTLs for Plant Architecture, Agronomic Traits and Cold Tolerance.	Genes (Basel)	11(9)		2020		
49093	32868892	Chen K.E., Chen H.Y., Tseng C.S., Tsay Y.F.	Improving nitrogen use efficiency by manipulating nitrate remobilization in plants.	Nat Plants	6(9)	1126-1135	2020		
49094	33157395	Banerjee A., Roychoudhury A.	Differential lead-fluoride and nickel-fluoride uptake in co-polluted soil variably affects the overall physiome in an aromatic rice cultivar.	Environ. Pollut.	268(Pt B)	115504	2021		
49095	32834013	Chaijan M., Panpipat W.	Nutritional composition and bioactivity of germinated Thai indigenous rice extracts: A feasibility study.	PLoS ONE	15(8)	e0237844	2020		
49096	32903403	Liu X., Fan F., Liu M., Long W., Yu Y., Yuan H., Pan G., Li N., Li S., Liu J.	Quantitative Trait Loci Mapping of Mineral Element Contents in Brown Rice Using Backcross Inbred Lines Derived From <i>Oryza longistaminata</i>.	Front Plant Sci	11	1229	2020		
49097	32854250	Gong Q., Wang B., Lu X., Tan J., Hou Y., Liu T., Liu Y.G., Zhu Q.	Nicking Endonuclease-Mediated Vector Construction Strategies for Plant Gene Functional Research.	Plants (Basel)	9(9)		2020		
49098	32973857	Huang J., Zhang N., Shan J., Peng Y., Guo J., Zhou C., Shi S., Zheng X., Wu D., Guan W., Yang K., Du B., Zhu L., Yuan L., He G., Chen R.	Salivary Protein 1 of Brown Planthopper Is Required for Survival and Induces Immunity Response in Plants.	Front Plant Sci	11	571280	2020		
49099	32849737	Tan Y., Sun X., Fang B., Sheng X., Li Z., Sun Z., Yu D., Liu H., Liu L., Duan M., Yuan D.	The Cds.71 on <i>tms5</i> May Act as a Mutation Hotspot to Originate a TGMS Trait in Indica Rice Cultivars.	Front Plant Sci	11	1189	2020		
49100	32750405	Malekzadeh R., Shahpiri A., Siapoush S.	Metalation of a rice type 1 metallothionein isoform (OsMTI-1b).	Protein Expr. Purif.	175	105719	2020		
49101	32811903	Luo H., Zhang T., Zheng A., He L., Lai R., Liu J., Xing P., Tang X.	Exogenous proline induces regulation in 2-acetyl-1-pyrroline (2-AP) biosynthesis and quality characters in fragrant rice (Oryza sativa L.).	Sci Rep	10(1)	13971	2020		
49102	32863854	Yang Z., Gao S., Xiao F., Li G., Ding Y., Guo Q., Paul M.J., Liu Z.	Leaf to panicle ratio (LPR): a new physiological trait indicative of source and sink relation in japonica rice based on deep learning.	Plant Methods	16	117	2020		
49103	32865276	Hou M., Luo F., Wu D., Zhang X., Lou M., Shen D., Yan M., Mao C., Fan X., Xu G., Zhang Y.	OsPIN9, an auxin efflux carrier, is required for the regulation of rice tiller bud outgrowth by ammonium.	New Phytol.			2020		
49104	32882536	Krishnamoorthy A., Agarwal T., Kotamreddy J.N.R., Bhattacharya R., Mitra A., Maiti T.K., Maiti M.K.	Impact of seed-transmitted endophytic bacteria on intra- and inter-cultivar plant growth promotion modulated by certain sets of metabolites in rice crop.	Microbiol. Res.	241	126582	2020		
49105	33254681	Banerjee A., Singh A., Roychoudhury A.	De novo RNA-Seq analysis in sensitive rice cultivar and comparative transcript profiling in contrasting genotypes reveal genetic biomarkers for fluoride-stress response.	Environ. Pollut.	267	115378	2020		
49106	32849786	Babu P.M., Neeraja C.N., Rathod S., Suman K., Uttam G.A., Chakravartty N., Lachagari V.B.R., Chaitanya U., Rao L.V.S., Voleti S.R.	Stable SNP Allele Associations With High Grain Zinc Content in Polished Rice (<i>Oryza sativa</i> L.) Identified Based on ddRAD Sequencing.	Front Genet	11	763	2020		
49107	32756426	Li Y.S., Ou S.L., Yang C.Y.	The Seedlings of Different <i>Japonica</i> Rice Varieties Exhibit Differ Physiological Properties to Modulate Plant Survival Rates under Submergence Stress.	Plants (Basel)	9(8)		2020		
49108	32741105	Feng Z., Yuan M., Zou J., Wu L.B., Wei L., Chen T., Zhou N., Xue W., Zhang Y., Chen Z., Hu K., Wang G.L., Liu W., Pan X., Zuo S.	Development of marker-free rice with stable and high resistance to rice black-streaked dwarf virus disease through RNA interference.	Plant Biotechnol. J.			2020		
49109	32882392	Matsumura H., Shiomi K., Yamamoto A., Taketani Y., Kobayashi N., Yoshizawa T., Tanaka S.I., Yoshikawa H., Endo M., Fukayama H.	Hybrid Rubisco with Complete Replacement of Rice Rubisco Small Subunits by Sorghum Counterparts Confers C4 Plant-like High Catalytic Activity.	Mol Plant	13(11)	1570-1581	2020		
49110	32784591	Kato H., Li F., Shimizu A.	The Selection of Gamma-Ray Irradiated Higher Yield Rice Mutants by Directed Evolution Method.	Plants (Basel)	9(8)		2020		
49111	32939107	Solangi A.M., Khanzada H., Wassan G.M., Rasheed A., Keerio A.A., Solangi M., Khanzada S., Faheem M., Bian J., Pan X., Han R.C., He X., Wu Z.	Genetic mapping and identification of new major loci for tolerance to low phosphorus stress in rice.	Physiol Mol Biol Plants	26(9)	1897-1910	2020		
49112	32638503	Zhang C., Meng D., Wang W., Dai T., Wang J., Guan A., Liu C., Liu X.	Overexpression of three P450 genes is responsible for resistance to novel pyrimidine amines in Magnaporthe oryzae.	Pest Manag. Sci.	76(12)	4268-4277	2020		
49113	32824423	Kim H., Kim O.W., Ahn J.H., Kim B.M., Oh J., Kim H.J.	Metabolomic Analysis of Germinated Brown Rice at Different Germination Stages.	Foods	9(8)		2020		
49114	32803476	Singh A.P., Pandey B.K., Mehra P., Heitz T., Giri J.	OsJAZ9 overexpression modulates jasmonic acid biosynthesis and potassium deficiency responses in rice.	Plant Mol. Biol.	104(4-5)	397-410	2020		
49115	33239830	Britwum K., Owusu E.S., Demont M.	Confronting genetic gains with markets: Retrospective lessons from New Rice for Africa (NERICA) in Uganda.	Outlook Agric	49(4)	298-310	2020		
49116	32847097	Lee S.I., Park J.W., Kwon S.J., Jo Y.D., Hong M.J., Kim J.B., Choi H.I.	Epigenetic Variation Induced by Gamma Rays, DNA methyltransferase Inhibitors, and Their Combination in Rice.	Plants (Basel)	9(9)		2020		
49117	32791360	Guha T., Gopal G., Chatterjee R., Mukherjee A., Kundu R.	Differential growth and metabolic responses induced by nano-scale zero valent iron in germinating seeds and seedlings of Oryza sativa L. cv. Swarna.	Ecotoxicol. Environ. Saf.	204	111104	2020		
49118	32859098	Nawaz G., Usman B., Zhao N., Han Y., Li Z., Wang X., Liu Y., Li R.	CRISPR/Cas9 Directed Mutagenesis of <i>OsGA20ox2</i> in High Yielding Basmati Rice (<i>Oryza sativa</i> L.) Line and Comparative Proteome Profiling of Unveiled Changes Triggered by Mutations.	Int J Mol Sci	21(17)		2020		
49119	32797316	Shimoyama N., Johnson M., Beaumont A., Schl?ppi M.	Multiple Cold Tolerance Trait Phenotyping Reveals Shared Quantitative Trait Loci in Oryza sativa.	Rice (N Y)	13(1)	57	2020		
49120	32819924	Morze J., Osadnik T., Osadnik K., Lejawa M., Jakubiak G., Pawlas N., Gasior M., Schwingshackl L., Banach M.	Comparative effect of nutraceuticals on lipid profile: a protocol for systematic review and network meta-analysis.	BMJ Open	10(8)	e032755	2020		
49121	32867335	Gujjar R.S., Banyen P., Chuekong W., Worakan P., Roytrakul S., Supaibulwatana K.	A Synthetic Cytokinin Improves Photosynthesis in Rice under Drought Stress by Modulating the Abundance of Proteins Related to stomatal conductance, Chlorophyll Contents, and Rubisco Activity.	Plants (Basel)	9(9)		2020		
49122	32857669	Ni L., Wang S., Shen T., Wang Q., Chen C., Xia J., Jiang M.	Calcium/calmodulin-dependent protein kinase OsDMI3 positively regulates saline-alkaline tolerance in rice roots.	Plant Signal Behav	15(11)	1813999	2020		
49123	32762649	Pan Y., Liang H., Gao L., Dai G., Chen W., Yang X., Qing D., Gao J., Wu H., Huang J., Zhou W., Huang C., Liang Y., Deng G.	Transcriptomic profiling of germinating seeds under cold stress and characterization of the cold-tolerant gene LTG5 in rice.	BMC Plant Biol.	20(1)	371	2020	LTG5	OsUGT706C4, UGT706C4, OsLTG5
49124	32797075	Wang Y., Wang J., Zhai L., Liang C., Chen K., Xu J.	Identify QTLs and candidate genes underlying source-, sink-, and grain yield-related traits in rice by integrated analysis of bi-parental and natural populations.	PLoS ONE	15(8)	e0237774	2020		
49125	32808190	Lan J., Lin Q., Zhou C., Ren Y., Liu X., Miao R., Jing R., Mou C., Nguyen T., Zhu X., Wang Q., Zhang X., Guo X., Liu S., Jiang L., Wan J.	Small grain and semi-dwarf 3, a WRKY transcription factor, negatively regulates plant height and grain size.by stabilizing SLR1 expression in rice.	Plant Mol. Biol.	104(4-5)	429-450	2020	SLR1,SGSD3	slr1-1, slr1, slr, GAI, OsGAI, OsSLR1, Os SLR1, OsRGA1, OsGRAS-18, OsGRAS-18, GRAS-18, GRAS18, SLR-1,OsWRKY36, WRKY36, OsSGSD3
49126	32442255	Perveen S., Qu M., Chen F., Essemine J., Khan N., Lyu M.A., Chang T., Song Q., Chen G.Y., Zhu X.G.	Overexpression of maize transcription factor mEmBP-1 increases photosynthesis, biomass, and yield in rice.	J. Exp. Bot.	71(16)	4944-4957	2020		
49127	32860735	Pak H., Wang H., Kim Y., Song U., Tu M., Wu D., Jiang L.	Creation of male-sterile lines that can be restored to fertility by exogenous methyl jasmonate for the establishment of a two-line system for the hybrid production of rice (Oryza sativa L.).	Plant Biotechnol. J.			2020		
49128	32781661	Xiang C., Yang X., Peng D., Kang H., Liu M., Li W., Huang W., Liu S.	Proteome-Wide Analyses Provide New Insights into the Compatible Interaction of Rice with the Root-Knot Nematode <i>Meloidogyne graminicola</i>.	Int J Mol Sci	21(16)		2020		
49129	32858770	Zhang G., Hou X., Wang L., Xu J., Chen J., Fu X., Shen N., Nian J., Jiang Z., Hu J., Zhu L., Rao Y., Shi Y., Ren D., Dong G., Gao Z., Guo L., Qian Q., Luan S.	PHOTO-SENSITIVE leaf rolling 1 encodes a polygalacturonase that modifies cell wall structure and drought tolerance in rice.	New Phytol.			2020	PSL1	OsPGL13, PGL13, OsPSL1, OsPG1, PG1, LTN-212
49130	32983213	Wang S., Liu W., Lu D., Lu Z., Wang X., Xue J., He X.	Distribution of Bacterial Blight Resistance Genes in the Main Cultivars and Application of <i>Xa23</i> in Rice Breeding.	Front Plant Sci	11	555228	2020		
49131	32906075	Chen J., Cao F., Li H., Shan S., Tao Z., Lei T., Liu Y., Xiao Z., Zou Y., Huang M., Abou-Elwafa SF.	Genotypic variation in the grain photosynthetic contribution to grain filling in rice.	J. Plant Physiol.	253	153269	2020		
49132	32785241	Ashokkumar S., Jaganathan D., Ramanathan V., Rahman H., Palaniswamy R., Kambale R., Muthurajan R.	Creation of novel alleles of fragrance gene OsBADH2 in rice through CRISPR/Cas9 mediated gene editing.	PLoS ONE	15(8)	e0237018	2020		
49133	32849738	Dong L., Liu S., Kyaing M.S., Xu P., Tharreau D., Deng W., Li X., Bi Y., Zeng L., Li J., Zhou J., Tao D., Yang Q.	Identification and Fine Mapping of <i>Pi69</i>(t), a New Gene Conferring Broad-Spectrum Resistance Against <i>Magnaporthe oryzae</i> From <i>Oryza glaberrima</i> Steud.	Front Plant Sci	11	1190	2020		
49134	32842845	Wang S.T., Guo X.F., Yao T.S., Xuan Y.H.	Indeterminate domain 3 negatively regulates plant erectness and the resistance of rice to sheath blight by controlling <i>PIN-FORMED</i> gene expressions.	Plant Signal Behav	15(11)	1809847	2020		
49135	32849749	Liang R., You L., Dong F., Zhao X., Zhao J.	Identification of Hydroxyproline-Containing Proteins and Hydroxylation of Proline Residues in Rice.	Front Plant Sci	11	1207	2020		
49136	32844350	Chang S., Chang T., Song Q., Wu J., Luo Y., Chen X., Zhu X.G., Deng Q.	Architectural and Physiological Features to Gain High Yield in an Elite Rice Line YLY1.	Rice (N Y)	13(1)	60	2020		
49137	32764704	Xu L.X., Xin X., Yin G.K., Zhou J., Zhou Y.C., Lu X.X.	Timing for antioxidant-priming against rice seed ageing: optimal only in non-resistant stage.	Sci Rep	10(1)	13294	2020		
49138	33303998	Won P.L.P., Liu H., Banayo N.P.M., Nie L., Peng S., Islam M.R., Sta Cruz P., Collard B.C.Y., Kato Y.	Identification and characterization of high-yielding, short-duration rice genotypes for tropical Asia.	Crop Sci.	60(5)	2241-2250			
49139	32826929	Tripthi D.K., Varma R.K., Singh S., Sachan M., Guerriero G., Kushwaha B.K., Bhardwaj S., Ramawat N., Sharma S., Singh V.P., Prasad S.M., Chauhan D.K., Dubey N.K., Sahi S.	Silicon tackles butachlor toxicity in rice seedlings by regulating anatomical characteristics, ascorbate-glutathione cycle, proline metabolism and levels of nutrients.	Sci Rep	10(1)	14078	2020		
49140	32849760	Koide Y., Kuniyoshi D., Kishima Y.	Fertile Tetraploids: New Resources for Future Rice Breeding?	Front Plant Sci	11	1231	2020		
49141	32825032	Mo Y., Jeong J.M., Ha S.K., Kim J., Lee C., Lee G.P., Jeung J.U.	Characterization of QTLs and Candidate Genes for Days to heading in Rice Recombinant Inbred Lines.	Genes (Basel)	11(9)		2020		
49142	32852584	Lin T., Zhou C., Chen G., Yu J., Wu W., Ge Y., Liu X., Li J., Jiang X., Tang W., Tian Y., Zhao Z., Zhu C., Wang C., Wan J.	Heterosis-associated genes confer high yield in super hybrid rice.	Theor. Appl. Genet.	133(12)	3287-3297	2020		
49143	33013945	Zuluaga A.P., Bidzinski P., Chanclud E., Ducasse A., Cayrol B., Gomez Selvaraj M., Ishitani M., Jauneau A., Deslandes L., Kroj T., Michel C., Szurek B., Koebnik R., Morel J.B.	The Rice DNA-Binding Protein ZBED Controls Stress Regulators and Maintains disease resistance After a Mild Drought.	Front Plant Sci	11	1265	2020	STE11,WRKY4,WNK8,KIP1,ZBED	OsSTE11, OsMKKK55, MKKK55,OsWRKY4, WRKY122, OsWRKY122,OsWNK8, STE20/MAPK3, STE20, MAPK3, OsSTE20, OsMAPK3,OsKIP1,OsZBED, OsPHD2, PHD2
49144	32778222	Hu X., Su S., Liu Q., Jiao Y., Peng Y., Li Y., Turlings T.C.	Caterpillar-induced rice volatiles provide enemy-free space for the offspring of the brown planthopper.	Elife	9		2020		
49145	32799794	He C., Zhang H.Y., Zhang Y.X., Fu P., You L.L., Xiao W.B., Wang Z.H., Song H.Y., Huang Y.J., Liao J.L.	Cytosine methylations in the promoter regions of genes involved in the cellular oxidation equilibrium pathways affect rice heat tolerance.	BMC Genomics	21(1)	560	2020		
49146	32750357	Awaludin N., Abdullah J., Salam F., Ramachandran K., Yusof N.A., Wasoh H.	Fluorescence-based immunoassay for the detection of Xanthomonas oryzae pv. oryzae in rice leaf.	Anal. Biochem.	610	113876	2020		
49147	32847519	Yang S., Fang G., Zhang A., Ruan B., Jiang H., Ding S., Liu C., Zhang Y., Jaha N., Hu P., Xu Z., Gao Z., Wang J., Qian Q.	Rice EARLY SENESCENCE 2, encoding an inositol polyphosphate kinase, is involved in leaf senescence.	BMC Plant Biol.	20(1)	393	2020		
49148	32824274	Yan B., Lv Y., Zhao C., Wang X.	Knowing When to Silence: Roles of Polycomb-Group Proteins in SAM Maintenance, Root Development, and Developmental Phase Transition.	Int J Mol Sci	21(16)		2020		
49149	32854449	Wang W., Ye J., Ma Y., Wang T., Shou H., Zheng L.	OsIRO3 Plays an Essential Role in Iron Deficiency Responses and Regulates Iron Homeostasis in Rice.	Plants (Basel)	9(9)		2020		
49150	32905288	Li J., Zhang L., Li L., Li X., Zhang X., Zhai S., Gao H., Li Y., Wu G., Wu Y.	Development of Genomic DNA Certified Reference Materials for Genetically Modified Rice Kefeng 6.	ACS Omega	5(34)	21602-21609	2020		
49151	32741081	Song S., Wang T., Li Y., Hu J., Kan R., Qiu M., Deng Y., Liu P., Zhang L., Dong H., Li C., Yu D., Li X., Yuan D., Yuan L., Li L.	A novel strategy for creating a new system of third-generation hybrid rice technology using a cytoplasmic sterility gene and a genic male-sterile gene.	Plant Biotechnol. J.			2020		
49152	32755712	Pan L., Xing J., Zhang H., Luo X., Chen Z.	Electron beam irradiation as a tool for rice grain storage and its effects on the physicochemical properties of rice starch.	Int. J. Biol. Macromol.	164	2915-2921	2020		
49153	32792551	Kulkarni S.R., Balachandran S.M., Ulaganathan K., Balakrishnan D., Praveen M., Prasad A.S.H., Fiyaz R.A., Senguttuvel P., Sinha P., Kale R.R., Rekha G., Kousik MBVN., Harika G., Anila M., Punniakoti E., Dilip T., Hajira S.K., Pranathi K., Das M.A., Shaik M., Chaitra K., Rao P.K., Gangurde S.S., Pandey M.K., Sundaram R.M.	Molecular mapping of QTLs for yield related traits in recombinant inbred line (RIL) population derived from the popular rice hybrid KRH-2 and their validation through SNP genotyping.	Sci Rep	10(1)	13695	2020		
49154	32867341	Chen Y., Dangol S., Wang J., Jwa N.S.	Focal Accumulation of ROS Can Block <i>Pyricularia oryzae</i> Effector BAS4-Expression and Prevent Infection in Rice.	Int J Mol Sci	21(17)		2020		
49155	32833069	Xu X., Ye J., Yang Y., Zhang M., Xu Q., Feng Y., Yuan X., Yu H., Wang Y., Yang Y., Wei X.	Genome-Wide Association Study of Rice Rooting Ability at the Seedling Stage.	Rice (N Y)	13(1)	59	2020		
49156	32810270	Toyomasu T., Shenton M.R., Okada K.	Evolution of Labdane-Related Diterpene Synthases in Cereals.	Plant Cell Physiol.	61(11)	1850-1859	2020		
49157	32786832	Guo D., Ling X., Zhou X., Li X., Wang J., Qiu S., Yang Y., Zhang B.	Evaluation of the Quality of a High-Resistant Starch and Low-Glutelin Rice (<i>Oryza sativa</i> L.) Generated through CRISPR/Cas9-Mediated Targeted Mutagenesis.	J. Agric. Food Chem.	68(36)	9733-9742	2020		
49158	32748498	Ma X., Fan J., Wu Y., Zhao S., Zheng X., Sun C., Tan L.	Whole-genome de novo assemblies reveal extensive structural variations and dynamic organelle-to-nucleus DNA transfers in African and Asian rice.	Plant J.	104(3)	596-612	2020		
49159	32772382	Lei G.J., Yamaji N., Ma J.F.	Two metallothionein genes highly expressed in rice nodes are involved in distribution of Zn to the grain.	New Phytol.			2020		
49160	32816163	Chatterjee J., Thakur V., Nepomuceno R., Coe R.A., Dionora J., Elmido-Mabilangan A., Llave A.D., Reyes A.M.D., Monroy A.N., Canicosa I., Bandyopadhyay A., Jena K.K., Brar D.S., Quick W.P.	Natural Diversity in Stomatal Features of Cultivated and Wild Oryza Species.	Rice (N Y)	13(1)	58	2020		
49161	33124363	Wei B.Y., Zhou H., Liu J.W., Zhang J.Y., Huang F., Huo Y., Hu Y.D., Gu J.F., Liu J., Liao B.H.	[Effects of Different Treatments with Water Management Combined with Leaf Spraying Silicon Fertilizer on Cd Accumulation in Rice].	Huan Jing Ke Xue	41(8)	3855-3861	2020		
49162	32908859	Pokhrel A., Dhakal A., Sharma S., Poudel A.	Evaluation of Physicochemical and Cooking Characteristics of Rice (<i>Oryza sativa</i> L.) Landraces of Lamjung and Tanahun Districts, Nepal.	Int J Food Sci	2020	1589150	2020		
49163	32759951	Cheah B.H., Lin H.H., Chien H.J., Liao C.T., Liu L.D., Lai C.C., Lin Y.F., Chuang W.P.	SWATH-MS-based quantitative proteomics reveals a uniquely intricate defense response in Cnaphalocrocis medinalis-resistant rice.	Sci Rep	10(1)	6597	2020		
49164	32796936	Higo A., Saihara N., Miura F., Higashi Y., Yamada M., Tamaki S., Ito T., Tarutani Y., Sakamoto T., Fujiwara M., Kurata T., Fukao Y., Moritoh S., Terada R., Kinoshita T., Ito T., Kakutani T., Shimamoto K., Tsuji H.	DNA methylation is reconfigured at the onset of reproduction in rice shoot apical meristem.	Nat Commun	11(1)	4079	2020	AGO4A,AGO4B	OsAGO4a, AGO4-2,OsAGO4b, AGO4-1 
49165	33013947	Watt C., Zhou G., Li C.	Harnessing Transcription Factors as Potential Tools to Enhance grain size Under Stressful Abiotic Conditions in Cereal Crops.	Front Plant Sci	11	1273	2020		
49166	32632535	Mishra M., Wungrampha S., Kumar G., Singla-Pareek SL., Pareek A.	How do?rice seedlings of landrace Pokkali survive in saline fields after transplantation? Physiology, biochemistry, and photosynthesis.	Photosyn. Res.			2020		
49167	32801080	Singh A., Roychoudhury A.	Silicon-regulated antioxidant and osmolyte defense and methylglyoxal detoxification functions co-ordinately in attenuating fluoride toxicity and conferring protection to rice seedlings.	Plant Physiol. Biochem.	154	758-769	2020		
49168	32699267	Pathak R.R., Jangam A.P., Malik A., Sharma N., Jaiswal D.K., Raghuram N.	Transcriptomic and network analyses reveal distinct nitrate responses in light and dark in rice leaves (Oryza sativa Indica var. Panvel1).	Sci Rep	10(1)	12228	2020		
49169	32242224	Singh R.R., Verstraeten B., Siddique S., Tegene A.M., Tenhaken R., Frei M., Haeck A., Demeestere K., Pokhare S., Gheysen G., Kyndt T.	Ascorbate oxidation activates systemic defence against root-knot nematode Meloidogyne graminicola in rice.	J. Exp. Bot.	71(14)	4271-4284	2020		
49170	32707763	Fracassetti D., Pozzoli C., Vitalini S., Tirelli A., Iriti M.	Impact of Cooking on Bioactive Compounds and Antioxidant Activity of Pigmented Rice Cultivars.	Foods	9(8)		2020		
49171	32551583	Xu X., Li X., Li Z., Li Y., Chen K., Wu L., Fa Y., Xu Z., Xu Q.	Effects of Genetic Background and Environmental Conditions on Amylopectin Chain-Length Distribution in a Recombinant Inbred Line of an Inter-subspecies Rice Cross.	J. Agric. Food Chem.	68(28)	7444-7452	2020		
49172	32737338	Han B., Ma X., Cui D., Geng L., Cao G., Zhang H., Han L.	Parallel reaction monitoring revealed tolerance to drought proteins in weedy rice (Oryza sativa?f. spontanea).	Sci Rep	10(1)	12935	2020		
49173	32849692	Khan I., Mohamed S., Regnault T., Mieulet D., Guiderdoni E., Sentenac H., V?ry AA.	Constitutive Contribution by the Rice OsHKT1;4 Na+ Transporter to Xylem Sap Desalinization and Low Na+ Accumulation in Young Leaves Under Low as High External Na+ Conditions.	Front Plant Sci	11	1130	2020		
49174	32680726	Hussain S., Huang J., Zhu C., Zhu L., Cao X., Hussain S., Ashraf M., Khaskheli M.A., Kong Y., Jin Q., Li X., Zhang J.	Pyridoxal 5'-phosphate enhances the growth and morpho-physiological characteristics of rice cultivars by mitigating the ethylene accumulation under salinity stress.	Plant Physiol. Biochem.	154	782-795	2020		
49175	32752068	Jung Y.J., Kim J.H., Lee H.J., Kim D.H., Yu J., Bae S., Cho Y.G., Kang K.K.	Generation and Transcriptome Profiling of SLR1-d7 and SLR1-d8 Mutant Lines with a New Semi-Dominant Dwarf Allele of <i>SLR1</i> Using the CRISPR/Cas9 System in Rice.	Int J Mol Sci	21(15)		2020		
49176	32828375	Jin P., Wang Y., Tan Z., Liu W., Miao W.	Antibacterial activity and rice-induced resistance, mediated by C15surfactin A, in controlling rice disease caused by Xanthomonas oryzae pv. oryzae.	Pestic Biochem Physiol	169	104669	2020		
49177	32743158	Jin G., Wu X., Cui G., Liu L., Kuang H., Xu C.	Development of an ic-ELISA and Immunochromatographic Strip Assay for the Detection of Diacetoxyscirpenol in Rice.	ACS Omega	5(29)	17876-17882	2020		
49178	32671480	Wang G.J., Wang Y., Ying J.Z., Song X.J.	Identification of qLG2, qLG8, and qWG2 as novel quantitative trait loci for grain shape and the allelic analysis in cultivated rice.	Planta	252(2)	18	2020		
49179	32240289	Chettry U., Chrungoo N.K.	A multifocal approach towards understanding the complexities of carotenoid biosynthesis and accumulation in rice grains.	Brief Funct Genomics	19(4)	324-335	2020		
49180	32721385	Jin S., Fei H., Zhu Z., Luo Y., Liu J., Gao S., Zhang F., Chen Y.H., Wang Y., Gao C.	Rationally Designed APOBEC3B Cytosine Base Editors with Improved Specificity.	Mol. Cell	79(5)	728-740.e6	2020		
49181	32710115	Zamani-Nour S., Lin H.C., Walker B.J., Mettler-Altmann T., Khoshravesh R., Karki S., Bagunu E., Sage T.L., Quick W.P., Weber A.P.M.	Overexpression of the chloroplastic 2-oxoglutarate/malate transporter in rice disturbs carbon and nitrogen homeostasis.	J. Exp. Bot.			2020		
49182	32683045	Sang J., Zou D., Wang Z., Wang F., Zhang Y., Xia L., Li Z., Ma L., Li M., Xu B., Liu X., Wu S., Liu L., Niu G., Li M., Luo Y., Hu S., Hao L., Zhang Z.	IC4R-2.0: Rice Genome Reannotation Using Massive RNA-seq Data.	Genomics, proteomics & bioinformatics	18(2)	161-172	2020		
49183	32664865	Barik S.R., Pandit E., Mohanty S.P., Nayak D.K., Pradhan S.K.	Genetic mapping of physiological traits associated with terminal stage drought tolerance in rice.	BMC Genet.	21(1)	76	2020		
49184	32666222	Addison C.K., Angira B., Kongchum M., Harrell D.L., Baisakh N., Linscombe S.D., Famoso A.N.	Characterization of Haplotype Diversity in the BADH2 Aroma Gene and Development of a KASP SNP Assay for Predicting Aroma in U.S. Rice.	Rice (N Y)	13(1)	47	2020		
49185	32793141	Mo X., Zhang L., Liu Y., Wang X., Bai J., Lu K., Zou S., Dong H., Chen L.	Three Proteins (Hpa2, HrpF and XopN) Are Concomitant Type III Translocators in Bacterial Blight Pathogen of Rice.	Front Microbiol	11	1601	2020		
49186	32849702	Wen Y., Fang Y., Hu P., Tan Y., Wang Y., Hou L., Deng X., Wu H., Zhu L., Zhu L., Chen G., Zeng D., Guo L., Zhang G., Gao Z., Dong G., Ren D., Shen L., Zhang Q., Xue D., Qian Q., Hu J.	Construction of a High-Density Genetic Map Based on SLAF Markers and QTL Analysis of Leaf Size in Rice.	Front Plant Sci	11	1143	2020		
49187	32671620	Theerawitaya C., Samphumphuang T., Tisarum R., Siangliw M., Cha-Um S., Takabe T., Toojinda T.	Expression level of Na+ homeostasis-related genes and salt-tolerant abilities in backcross introgression lines of rice crop under salt stress at reproductive stage.	Protoplasma	257(6)	1595-1606	2020		
49188	32738581	Xiong Q., Zhong L., Du J., Zhu C., Peng X., He X., Fu J., Ouyang L., Bian J., Hu L., Sun X., Xu J., Zhou D., Cai Y., Fu H., He H., Chen X.	Ribosome profiling reveals the effects of nitrogen application translational regulation of yield recovery after abrupt drought-flood alternation in rice.	Plant Physiol. Biochem.	155	42-58	2020		
49189	32442316	Zhang X., Zhao M., McCarty D.R., Lisch D.	Transposable elements employ distinct integration strategies with respect to transcriptional landscapes in eukaryotic genomes.	Nucleic Acids Res.	48(12)	6685-6698	2020		
49190	32627551	Yin J.M., Wang H.L., Yang Z.K., Wang J., Wang Z., Duan L.S., Li Z.H., Tan W.M.	Engineering Lignin Nanomicroparticles for the Antiphotolysis and Controlled Release of the Plant Growth Regulator Abscisic Acid.	J. Agric. Food Chem.	68(28)	7360-7368	2020		
49191	32771145	Hu B., Chen W., Guo L., Liu Y., Pu Z., Zhang G., Tu B., Yuan H., Wang Y., Ma B., Li W., Yin J., Chen X., Qin P., Li S.	Characterization of a novel allele of BC12/GDD1 indicates a differential leaf color function for BC12/GDD1 in Indica and Japonica backgrounds.	Plant Sci.	298	110585	2020		
49192	32277700	Diop B., Wang D.R., Drame K.N., Gracen V., Tongoona P., Dzidzienyo D., Nartey E., Greenberg A.J., Djiba S., Danquah E.Y., McCouch S.R.	Bridging old and new: diversity and evaluation of high iron-associated stress response of rice cultivated in West Africa.	J. Exp. Bot.	71(14)	4188-4200	2020		
49193	32771932	Zhou H., Chen Y., Zhai F., Zhang J., Zhang F., Yuan X., Xie Y.	Hydrogen sulfide promotes rice drought tolerance via reestablishing redox homeostasis and activation of ABA biosynthesis and signaling.	Plant Physiol. Biochem.	155	213-220	2020		
49194	32793268	Whitcomb S.J., Rakpenthai A., Br?ckner F., Fischer A., Parmar S., Erban A., Kopka J., Hawkesford M.J., Hoefgen R.	Cysteine and Methionine Biosynthetic Enzymes Have Distinct Effects on Seed Nutritional Quality and on Molecular Phenotypes Associated With Accumulation of a Methionine-Rich Seed Storage Protein in Rice.	Front Plant Sci	11	1118	2020		
49195	32849696	Uddin M.N., Fukuta Y.	A Region on Chromosome 7 Related to Differentiation of Rice (<i>Oryza sativa</i> L.) Between Lowland and Upland Ecotypes.	Front Plant Sci	11	1135	2020		
49196	32678216	Pan X., Li Y., Liu W., Liu S., Min J., Xiong H., Dong Z., Duan Y., Yu Y., Li X.	QTL mapping and candidate gene analysis of cadmium accumulation in polished rice by genome-wide association study.	Sci Rep	10(1)	11791	2020		
49197	32736923	Zhang P., Wang Y., Gu X.	RNA 5-Methylcytosine Controls Plant Development and Environmental Adaptation.	Trends Plant Sci.	25(10)	954-958	2020		
49198	32645354	Chen Z.Q., Ding S.W.	JAcked Responses Go Viral: Hormonal Regulation of Antiviral RNAi.	Cell Host Microbe	28(1)	7-9	2020		
49199	32849689	Wada S., Miyake C., Makino A., Suzuki Y.	Photorespiration Coupled With CO2 Assimilation Protects Photosystem I From Photoinhibition Under Moderate Poly(Ethylene Glycol)-Induced Osmotic Stress in Rice.	Front Plant Sci	11	1121	2020		
49200	32715704	Liu R., Hafeez A., Li E.L., Meng J.L., Tian J.H., Cai K.Z.	[Effects of nitrogen fertilizer reduction and biochar application on paddy soil nutrient and nitrogen uptake of rice].	Ying Yong Sheng Tai Xue Bao	31(7)	2381-2389	2020		
49201	32630695	Nawaz G., Usman B., Peng H., Zhao N., Yuan R., Liu Y., Li R.	Knockout of <i>Pi21</i> by CRISPR/Cas9 and iTRAQ-Based Proteomic Analysis of Mutants Revealed New Insights into <i>M. oryzae</i> Resistance in Elite Rice Line.	Genes (Basel)	11(7)		2020		
49202	32568332	Takeuchi J., Nagamiya H., Moroi S., Ohnishi T., Todoroki Y.	Design of potent ABA receptor antagonists based on a conformational restriction approach.	Org. Biomol. Chem.	18(26)	4988-4996	2020		
49203	32683610	Luck K., Chen X., Norris A.M., Chen F., Gershenzon J., K?llner TG.	The reconstruction and biochemical characterization of ancestral genes furnish insights into the evolution of terpene synthase function in the Poaceae.	Plant Mol. Biol.	104(1-2)	203-215	2020		
49204	32676742	Li X., Zheng H., Wu W., Liu H., Wang J., Jia Y., Li J., Yang L., Lei L., Zou D., Zhao H.	QTL Mapping and Candidate Gene Analysis for Alkali Tolerance in Japonica Rice at the bud Stage Based on Linkage Mapping and Genome-Wide Association Study.	Rice (N Y)	13(1)	48	2020		
49205	32888616	Zhang R., Bai X., Shao J., Chen A., Wu H., Luo S.	Effects of zero-valent iron nanoparticles and quinclorac coexposure on the growth and antioxidant system of rice (Oryza sativa L.).	Ecotoxicol. Environ. Saf.	203	111054	2020		
49206	32338197	Kini K., Lefeuvre P., Poulin L., Silu? D., Koebnik R.	Genome Resources of Three West African Strains of <i>Pantoea ananatis</i> Causing Bacterial Blight and Grain Discoloration of Rice.	Phytopathology	110(9)	1500-1502	2020		
49207	32649276	Shen L., Yang L., Zhang W.	Multiple basic amino acid residues contribute to phosphatidic acid-mediated inhibition of rice potassium channel OsAKT2.	Plant Signal Behav	15(9)	1789818	2020		
49208	32632302	Lu Y., Tian Y., Shen R., Yao Q., Wang M., Chen M., Dong J., Zhang T., Li F., Lei M., Zhu J.K.	Targeted, efficient sequence insertion and replacement in rice.	Nat. Biotechnol.	38(12)	1402-1407	2020		
49209	33134621	Wang M., Yang J., Wan J., Tao D., Zhou J., Yu D., Xu P.	A hybrid sterile locus leads to the linkage drag of interspecific hybrid progenies.	Plant Divers	42(5)	370-375	2020		
49210	32650624	Kim Y.J., Jeong H.Y., Kang S.Y., Silva J., Kim E.J., Park S.K., Jung K.H., Lee C.	Physiological Importance of Pectin Modifying Genes During Rice pollen Development.	Int J Mol Sci	21(14)		2020	PMEI6,PME16,PME33,PMEI4,PMEI12,PMEI15,PMEI43,PMEI27,PME35,PMEI35,PMEI3,PMEI16,PME23,PME27,PME12,OSIPP3,PME14,PMEI2,PME10,PME34,PME26,PMEI22,PME1,PMEI23	OsPMEI6,OsPME16,OsPME33,OsPMEI4,OsPMEI12,OsPMEI15,OsPMEI48, PMEI48, OsPMEI43,AGP, OsAGP, OsPMEI27,OsPME35,OsPMEI35,OsPMEI3,OsPMEI16,OsPME23,OsPME27,OsPME12,OsPMEI24, PMEI24,OsPME14,OsPMEI2,OsPME10,OsPME34,OsPME26,OsPMEI22,OsPME11, PME11, OsPME1,OsPMEI23
49211	32704053	Shetty R., Prakash N.B.	Effect of different biochars on acid soil and growth parameters of rice plants under aluminium toxicity.	Sci Rep	10(1)	12249	2020		
49212	32724216	Chen S., Wang C., Yang J., Chen B., Wang W., Su J., Feng A., Zeng L., Zhu X.	Identification of the novel bacterial blight resistance gene Xa46(t) by mapping and expression analysis of the rice mutant H120.	Sci Rep	10(1)	12642	2020	XA46	OsPP2C76, PP2C76, OsPP122, PP122, Xa46(t), Xa46, Doa, OsDoa
49213	32651668	Luo J., Butardo V.M., Yang Q., Konik-Rose C., Colgrave M.L., Millar A., Jobling S.A., Li Z.	The impact of the indica rice SSIIa allele on the apparent high amylose starch from rice grain with downregulated japonica SBEIIb.	Theor. Appl. Genet.	133(10)	2961-2974	2020		
49214	33016612	Leng Y., Sun J., Wang J., Liu H., Zheng H., Zhang M., Zhao H., Zou D.	Genome-wide lncRNAs identification and association analysis for cold-responsive genes at the booting stage in rice (Oryza sativa L.).	Plant Genome	13(2)	e20020	2020		
49215	32682969	Muthuramalingam P., Jeyasri R., Selvaraj A., Pandian S.K., Ramesh M.	Integrated transcriptomic and metabolomic analyses of glutamine metabolism genes unveil key players in Oryza sativa (L.) to ameliorate the unique and combined abiotic stress tolerance.	Int. J. Biol. Macromol.	164	222-231	2020		
49216	32661799	Xu L., You H., Zhang O., Xiang X.	Genetic Effects of Soluble starch synthase IV-2 and It with ADPglucose pyrophorylase large unit and Pullulanase on Rice Qualities.	Rice (N Y)	13(1)	46	2020		
49217	32652789	Hong W.J., Kim Y.J., Kim E.J., Kumar Nalini Chandran A., Moon S., Gho Y.S., Yoou M.H., Kim S.T., Jung K.H.	CAFRI-Rice: CRISPR applicable functional redundancy inspector to accelerate functional genomics in rice.	Plant J.			2020		
49218	32731577	Cheong M.S., Seo K.H., Chohra H., Yoon Y.E., Choe H., Kantharaj V., Lee Y.B.	Influence of Sulfonamide Contamination Derived from Veterinary Antibiotics on Plant Growth and Development.	Antibiotics (Basel)	9(8)		2020		
49219	32805614	Huang J., Zhu C., Hussain S., Huang J., Liang Q., Zhu L., Cao X., Kong Y., Li Y., Wang L., Li J., Zhang J.	Effects of nitric oxide on nitrogen metabolism and the salt resistance of rice (Oryza sativa L.) seedlings with different salt tolerances.	Plant Physiol. Biochem.	155	374-383	2020		
49220	32712731	Li R., Wu H., Ding J., Li N., Fu W., Gan L., Li Y.	Transgenic merA and merB expression reduces mercury contamination in vegetables and grains grown in mercury-contaminated soil.	Plant Cell Rep.	39(10)	1369-1380	2020		
49221	32609884	Nghi K.N., Tagliani A., Mariotti L., Weits D.A., Perata P., Pucciariello C.	Auxin is required for the long coleoptile trait in japonica rice under submergence.	New Phytol.	229(1)	85-93	2021		
49222	32751339	Kanda Y., Nishizawa Y., Kamakura T., Mori M.	Overexpressed <i>BSR1</i>-Mediated Enhancement of disease resistance Depends on the MAMP-Recognition System.	Int J Mol Sci	21(15)		2020		
49223	32645752	Back K.	Melatonin metabolism, signaling and possible roles in plants.	Plant J.			2020		
49224	32832323	Fatima T., Mishra I., Verma R., Arora N.K.	Mechanisms of halotolerant plant growth promoting <i>Alcaligenes</i> sp. involved in salt tolerance and enhancement of the growth of rice under salinity stress.	3 Biotech	10(8)	361	2020		
49225	32654337	Deb S., Ghosh P., Patel H.K., Sonti R.V.	Interaction of the Xanthomonas effectors XopQ and XopX results in induction of rice immune responses.	Plant J.			2020		
49226	32668582	Qu M., Essemine J., Li M., Chang S., Chang T., Chen G.Y., Zhu X.G.	Genome-Wide Association Study Unravels <i>LRK1</i> as a Dark Respiration Regulator in Rice (<i>Oryza sativa</i> L.).	Int J Mol Sci	21(14)		2020		
49227	32673318	Donde R., Mohapatra S., Baksh S.K.Y., Padhy B., Mukherjee M., Roy S., Chattopadhyay K., Anandan A., Swain P., Sahoo K.K., Singh O.N., Behera L., Dash S.K.	Identification of QTLs for high grain yield and component traits in new plant types of rice.	PLoS ONE	15(7)	e0227785	2020		
49228	32800243	Zhang S., Deng Y., Fu S., Xu M., Zhu P., Liang Y., Yin H., Jiang L., Bai L., Liu X., Jiang H., Liu H.	Reduction mechanism of Cd accumulation in rice grain by Chinese milk vetch residue: Insight into microbial community.	Ecotoxicol. Environ. Saf.	202	110908	2020		
49229	32438973	Nonhebel H.M., Griffin K.	Production and roles of IAA and ABA during development of superior and inferior rice grains.	Funct. Plant Biol.	47(8)	716-726	2020		
49230	32608919	Yang X.R., Huang Y.C., Liu Z.Q., Huang Y.Z., Cheng L.L., Zhang C.B.	[Effects of Foliar Spraying of 2,3-dimercaptosuccinic Acid on Cadmium Uptake, Transport, and Antioxidant System in Rice Seedlings].	Huan Jing Ke Xue	41(7)	3441-3448	2020		
49231	32647532	Chang T.G., Song Q.F., Zhao H.L., Chang S., Xin C., Qu M., Zhu X.G.	An in situ approach to characterizing photosynthetic gas exchange of rice panicle.	Plant Methods	16	92	2020		
49232	32968348	Yamaguchi K., Yamamoto T., Segami S., Horikawa M., Chaya G., Kitano H., Iwasaki Y., Miura K.	<i>GW2</i> mutation increases grain width and culm thickness in rice (<i>Oryza sativa</i> L.).	Breed. Sci.	70(4)	456-461	2020		
49233	32578415	Qian D., Qiu B., Zhou N., Takaiwa F., Yong W., Qu L.Q.	Hypotensive Activity of Transgenic Rice Seed Accumulating Multiple Antihypertensive Peptides.	J. Agric. Food Chem.	68(27)	7162-7168	2020		
49234	32664377	Al Nayef M., Solis C., Shabala L., Ogura T., Chen Z., Bose J., Maathuis F.J.M., Venkataraman G., Tanoi K., Yu M., Zhou M., Horie T., Shabala S.	Changes in Expression Level of <i>OsHKT1;5</i> Alters Activity of Membrane Transporters Involved in K+ and Ca2+ Acquisition and Homeostasis in Salinized Rice Roots.	Int J Mol Sci	21(14)		2020		
49235	32788993	Grimm A., Sahi V.P., Amann M., Vidotto F., Fogliatto S., Devos K.M., Ferrero A., Nick P.	Italian weedy rice-A case of de-domestication?	Ecol Evol	10(15)	8449-8464	2020		
49236	32663678	Wu X., Liu Y., Yin S., Xiao K., Xiong Q., Bian S., Liang S., Hou H., Hu J., Yang J.	Metabolomics revealing the response of rice (Oryza sativa L.) exposed to polystyrene microplastics.	Environ. Pollut.	266(Pt 1)	115159	2020		
49237	32801491	Banik N., Bhattacharjee S.	Complementation of ROS scavenging secondary metabolites with enzymatic antioxidant defense system augments redox-regulation property under salinity stress in rice.	Physiol Mol Biol Plants	26(8)	1623-1633	2020		
49238	32384162	Lee S., Park J., Lee J., Shin D., Marmagne A., Lim P.O., Masclaux-Daubresse C., An G., Nam H.G.	OsASN1 Overexpression in Rice Increases Grain Protein Content and Yield under Nitrogen-Limiting Conditions.	Plant Cell Physiol.	61(7)	1309-1320	2020		
49239	32736037	Hu J., Zeng T., Xia Q., Huang L., Zhang Y., Zhang C., Zeng Y., Liu H., Zhang S., Huang G., Wan W., Ding Y., Hu F., Yang C., Chen L., Wang W.	Identification of Key Genes for the Ultrahigh Yield of Rice Using Dynamic Cross-tissue Network Analysis.	Genomics, proteomics & bioinformatics			2020		
49240	32793287	Das P., Adak S., Lahiri Majumder A.	Genetic Manipulation for Improved Nutritional Quality in Rice.	Front Genet	11	776	2020		
49241	32793250	Yang F., Zhang J., Zhang H., Ji G., Zeng L., Li Y., Yu C., Fernando W.G.D., Chen W.	Bacterial Blight Induced Shifts in Endophytic Microbiome of Rice Leaves and the Enrichment of Specific Bacterial Strains With Pathogen Antagonism.	Front Plant Sci	11	963	2020		
49242	32707649	Yu Z., Ustin S.L., Zhang Z., Liu H., Zhang X., Meng X., Cui Y., Guan H.	Estimation of a New Canopy Structure Parameter for Rice Using Smartphone Photography.	Sensors (Basel)	20(14)		2020		
49243	32649704	Shao C.H., Qiu C.F., Qian Y.F., Liu G.R.	Nitrate deficiency decreased photosynthesis and oxidation-reduction processes, but increased cellular transport, lignin biosynthesis and flavonoid metabolism revealed by RNA-Seq in Oryza sativa leaves.	PLoS ONE	15(7)	e0235975	2020		
49244	32699370	Makino A., Kaneta Y., Obara M., Ishiyama K., Kanno K., Kondo E., Suzuki Y., Mae T.	High yielding ability of a large-grain rice cultivar, Akita 63.	Sci Rep	10(1)	12231	2020		
49245	32775950	Alam R., Hummel M., Yeung E., Locke A.M., Ignacio J.C.I., Baltazar M.D., Jia Z., Ismail A.M., Septiningsih E.M., Bailey-Serres J.	Flood resilience loci <i>SUBMERGENCE 1</i> and <i>ANAEROBIC GERMINATION 1</i> interact in seedlings established underwater.	Plant Direct	4(7)	e00240	2020		
49246	33135782	Guo F., Huang Y., Qi P., Lian G., Hu X., Han N., Wang J., Zhu M., Qian Q., Bian H.	Functional analysis of auxin receptor OsTIR1/OsAFB family members in rice grain yield, tillering, plant height, root system, germination, and auxinic herbicide resistance.	New Phytol.			2020	IAA11,FBOX206,TIR1,_,_,_,IAA1	OsIAA11,OsAFB2, ABF2, OsAFB2-1, OsAFB2-2, OsFbox206, Os_F0492, OsTIR1, TIR1,  OsFBL16, FBL16,OsTIR1, OsFbox248, Fbox248, Os_F071, AFB,  OsFBL21, FBL21,Os_F0720, FBL55, OsFBL55, OsAFB3, AFB3,  OsFBL55, FBL55,Os_F0701, OsAFB6, AFB6, OsAFB5, AFB5,  OsFBL70, FBL70,Os_F0767, OsTIR1, TIR1, OsAFB4, AFB4 ,  OsFBL71, FBL71,OsIAA1, OsIAA4
49247	19816997	Zhang X., Yu X., Zhang H., Song F.	Molecular characterization of a defense-related AMP-binding protein gene, OsBIABP1, from rice.	J Zhejiang Univ Sci B	10(10)	731-9	2009	BIABP1	OsBIABP1
49248	14651265	Sun Tae Kim, Kyu Seong Cho, Sang Gon Kim, Sun Young Kang, Kyu Young Kang	A rice isoflavone reductase-like gene, OsIRL, is induced by rice blast fungal elicitor.	Mol. Cells	16(2)	224-31	2003	IRL	OsIRL
49249	19825006	Sang Gon Kim, Sun Tae Kim, Wang Y., Sung-Kun Kim, Chang Hoon Lee, Keun-Ki Kim, Ju-Kon Kim, Sang Yeol Lee, Kyu Young Kang	Overexpression of rice Isoflavone reductase-like gene (OsIRL) confers tolerance to reactive oxygen species.	Physiol Plant	138(1)	1-9	2010	IRL	OsIRL
49250	20333238	Julian L Wong, Alexander R Leydon, Mark A Johnson	HAP2(GCS1)-dependent gamete fusion requires a positively charged carboxy-terminal domain.	PLoS Genet.	6(3)	e1000882	2010	GCS1	OsGCS1, OsHAP2(GCS1), OsHAP2, HAP2
49251	20811811	Won S.K., Choi S.B., Kumari S., Cho M., Lee S.H., Cho H.T.	root hair-specific EXPANSIN B genes have been selected for Graminaceae root hairs.	Mol. Cells	30(4)	369-76	2010	EXPB5	OsEXPB5, osaEXPb1.19
49252	28975033	Hu B., Zhang G., Liu W., Shi J., Wang H., Qi M., Li J., Qin P., Ruan Y., Huang H., Zhang Y., Xu L.	Divergent regeneration-competent cells adopt a common mechanism for callus initiation in angiosperms.	Regeneration (Oxford, England)	4(3)	132-139	2017	QHB,WOX11,WOX6	OsQHB, OsWOX9, WOX9, WOX5, Os WOX5, OsWOX5, QHB/OsWOX9,OsWOX11, Os WOX11, OsWOX12A,OsWOX6, Os WOX6, OsWOX12B, WOX12B
49253	33307423	Navarro B.B., Del Frari BK., Dias PVDC., Lemainski L.E., Mario R.B., Ponte L.R., Goergen A., Tarouco C.P., Neves V.M., Dressler V.L., Fett J.P., Brunetto G., Sperotto R.A., Nicoloso F.T., Ricachenevsky F.K.	The copper economy response is partially conserved in rice (Oryza sativa L.).	Plant Physiol. Biochem.	158	113-124	2021	MIR397B,SODCC1,COPT1,COPT5,MIR397A,SODCC2,MIR398B,HMA5,FSD1.1 ,SOD4,MIR408,SODB,SOD2,_	miR397b, osa-miR397b, osa-MIR397b, miR397b*, OsmiR397b, Os-MIR397b,sodCc1, SODCC.1, sodA, RSODA, OsSOD1, OsCSD2, OsSodA, SodCc2, OsSODA1, SODCc1-Cu/Zn, OsCu/Zn-SOD2, Cu/Zn-SOD2, OsCSD1.2, CSD1.2, OsSODCc1-Cu/Zn, SODCc1-Cu/Zn, CuZnSOD1, Cu/ZnSOD1, OsCu/ZnSOD1, OsCSD4, CDS4, CuZnSOD4, OsCuZnSOD1, OsCSD1, CSD1, OsSOD2,OsCOPT1,OsCOPT5,miR397a, osa-miR397a, osa-MIR397a, OsmiR397a,Cu/Zn-SOD, Cu/Zn- SOD, OsCu-ZnSOD2, Cu-ZnSOD2, OsSODB, OsSOD3, SodCc2, Os SodCc2, sodB, OsSodB, RSODB, OssodCc1, OsCSD1.1, CSD1.1, OsCDS1, OsSOD3-CU/Zn, SOD3-CU/Zn, CuZnSOD2, Cu/ZnSOD2, OsCu/ZnSOD2, OsCSD1, CSD1, CuZnSOD1, OsCuZnSOD2, OsCSD4, CSD4, OsCSD3, CSD3, Cu/Zn-SOD3,miR398b, osa-miR398b, osa-MIR398b, OsmiR398b,OsHMA8, osHMA5, HMA8, OsHMP27, HMP27,OsFSD1.1, OsSOD-Fe, SOD-Fe, FeSOD1, OsFSD2, FSD2,OsSOD4, OsCSD4, OsCu/Zn-SOD1, Cu/Zn-SOD1, OsCSD2, CSD2, OsSOD4-Cu/Zn, SOD4-Cu/Zn, Cu/ZnSOD3, CuZnSOD3, sodCp, OssodCp, OsCu/ZnSOD3, CuZnSOD2, OsSOD1,miR408, osa-MIR408osa-miR408 osa-miR408-3p osa-miR408-5p, OsMIR408 ,SodB, Fe-SOD, Fe- SOD, OsFe-SOD, Fe+-SOD, OsFe+-SOD, OsFe-SODa, OsFe-SODb, OsFeSODb, FeSODb, OsFSD1.2, FSD1.2, FeSOD2, OsFSD2, FSD2, OsFSD1, FSD1, ALM1, OsALM1,OsSOD2, OsSOD2-Cu/Zn, SOD2-Cu/Zn, OsCSD3, CSD3, CuZnSOD3, OsCSD2, CSD2, Cu/Zn-SOD2,SOD, OsSOD-Cu/Zn, SOD-Cu/Zn, OsaCCS, OsCCS, CCS
49254	33064890	Xia T., Chen H., Dong S., Ma Z., Ren H., Zhu X., Fang X., Chen F.	OsWUS promotes tiller bud growth by establishing weak apical dominance in rice.	Plant J.	104(6)	1635-1647	2020	ARF1,OSH43,OSH1,LOGL1,MYB102,SPL17,IPT4,TAB1,ASP1,2R_MYB22 	OsARF1, arf1, OsARF23, ARF23,OsH43, H43,OSKN1, Oskn1, OsKN1, OSH1/Oskn1, HB75,OsLOGL1,R2R3-MYB, OsMYB102, OsMYB81, MYB81,OsSPL17,OsIPT4,Os WUS, WUS, OsWOX1, WOX1, OsWUS, OsTAB, TAB1/WUS, MOC3, MOC3/OsWUS, SRT1, MOC3/TAB1/SRT1, DC1, OsDC1, DAP1, OsDAP1,OsLIS-L1, OsWD40-155, ASP1, TPR2, OsTPR2, OsREL2, REL2, OsTPL3, TPL3, OsTPL2, TPL2, ASP-LSL,OsMYB1, MYB1, Os2R_MYB22 
49255	33255720	Kawada K., Uchida Y., Takahashi I., Nomura T., Sasaki Y., Asami T., Yajima S., Ito S.	Triflumizole as a Novel Lead Compound for Strigolactone Biosynthesis Inhibitor.	Molecules	25(23)		2020	SLB1	OsSLB1, Os900/CYP711A2, Os900, CYP711A2, OsCYP711A2, OsCO, CO
49256	33206358	Park S.I., Kim J.J., Kim H.S., Kim Y.S., Yoon H.S.	Enhanced glutathione content improves lateral root development and grain yield in rice plants.	Plant Mol. Biol.	105(4-5)	365-383	2021	TIFY11B,SAUR3,R9-LOX1,GS2,ERF133,ERF103,AOS4	OsJAZ4, JAZ4, OsJAZ 10, OsJAZ10, JAZ10, OsTIFY11b,OsSAUR3, OsSAUR72,Osr9-LOX1, OsLOX3, LOX3,OsGS2, OsGS,OsERF#133, OsERF133, AP2/EREBP#065, AP2/EREBP65, OsDREB1H, DREB1H, OsDREB1m, DREB1m,DERF5, OsDERF5, OsERF#103, OsERF103, AP2/EREBP#130, AP2/EREBP130, OsERF109,OsAOS4, CYP74A4, OsHPL1, HPL1
49257	33015858	Qu M., Essemine J., Xu J., Ablat G., Perveen S., Wang H., Chen K., Zhao Y., Chen G., Chu C., Zhu X.	Alterations in stomatal response to fluctuating light increase biomass and yield of rice under drought conditions.	Plant J.	104(5)	1334-1347	2020	NHX1	OsNHX1, OcNHX1, OgNHX1, OrNHX1, OpNHX1, ObNHX1
49258	33239288	Xu G., Zhong X., Shi Y., Liu Z., Jiang N., Liu J., Ding B., Li Z., Kang H., Ning Y., Liu W., Guo Z., Wang G.L., Wang X.	A fungal effector targets a heat shock-dynamin protein complex to modulate mitochondrial dynamics and reduce plant immunity.	Sci Adv	6(48)		2020	DJA9,DJLM	OsDjA9, DjA9,DJ-LM, OsDRP1E, DRP1E 
49259	33235293	Ruang-Areerate P., Travis A.J., Pinson S.R.M., Tarpley L., Eizenga G.C., Guerinot M.L., Salt D.E., Douglas A., Price A.H., Norton G.J.	Genome-wide association mapping for grain manganese in rice (Oryza sativa L.) using a multi-experiment approach.	Heredity	126(3)	505-520	2021	GCC7,FRDL1,MTP8.1	HMA3, OsHMA3, OsHMA3a, OsHMA3n, osHMA3, OsHMP34, HMP34,OsFRDL1,OsMTP8.1
49260	33177521	Du K., Luo Q., Yin L., Wu J., Liu Y., Gan J., Dong A., Shen W.H.	OsChz1 acts as a histone chaperone in modulating chromatin organization and genome function in rice.	Nat Commun	11(1)	5717	2020	EF1,HD3A,RFT1,CHZ1	Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,FT-L 3, OsFTL3, FTL3, FT-L3, RFT, OsRFT1,OsChz1
49261	33233855	Cheung M.Y., Auyeung W.K., Li K.P., Lam H.M.	A Rice Immunophilin Homolog, OsFKBP12, Is a Negative Regulator of Both Biotic and Abiotic Stress Responses.	Int J Mol Sci	21(22)		2020	YCHF1,FKBP12	OsYchF1, YchF1, OsPM8ATP ,OsFKBP12
49262	33150964	Xia C., Gong Y., Chong K., Xu Y.	Phosphatase OsPP2C27 directly dephosphorylates OsMAPK3 and OsbHLH002 to negatively regulate cold tolerance in rice.	Plant Cell Environ.	44(2)	491-505	2021	BHLH2,DREB1C,DREB1A,PP2C27,MSRMK2,DREB1B,TPP1	OsbHLH002, bHLH002, OsbHLH2, bHLH2, OsICE1, ICE1, OsbHLH002/OsICE1,OsDREB1C, CBF1, ERF26, OsERF026, OsERF#026, OsERF26, AP2/EREBP#098, AP2/EREBP98, OsCBF2, CBF2,OsDREB1A, Os DREB1A, CBF3, OsCBF3, OsDREB1A/OsCBF3, ERF24, OsERF24, OsERF024, OsERF#024, AP2/EREBP#114, AP2/EREBP114, OsDREBL,OsPP2C27, OsPP40,OsMSRMK2, OsMAPK5, OsMAP1, OsMPK3, OsBIMK1, OsMAPK2, MPK5, BIMK1, MAPK2, MAPK5, MPK3, OsMPK5, OsMAPK3, OsMAPK5b, MAPK3,OsDREB1B, ERF31, OsERF031, OsERF#031, OsERF31, AP2/EREBP#169, AP2/EREBP169, OsDREB1b, OsDREB1C, OsCBF1, CBF1,OsTPP1, OsTPS, TPP
49263	33329664	Yu Q., Chen L., Zhou W., An Y., Luo T., Wu Z., Wang Y., Xi Y., Yan L., Hou S.	<i>RSD1</i> Is Essential for Stomatal Patterning and Files in Rice.	Front Plant Sci	11	600021	2020	BHLH2,BHLH55,STOMAGEN,_,REL2,SDD1	OsbHLH002, bHLH002, OsbHLH2, bHLH2, OsICE1, ICE1, OsbHLH002/OsICE1,OsbHLH055, bHLH055, bHLH55, OsMUTE, MUTE,OsSTOMAGEN, OsEPFL9, EPFL9, OsEPFL10, EPFL10,OsEPF1, EPF1,OsREL2, OsDLT10, DLT10, RSD1, OsRSD1, RSD1/REL2,OsSDD1, OsSub26, SUB26
49264	33243710	Cao L., Gao Y., Yu J., Niu S., Zeng J., Yao Q., Wang X., Bu Z., Xu T., Liu X., Zhu Y.	Streptomyces hygroscopicus OsiSh-2-induced mitigation of Fe deficiency in rice plants.	Plant Physiol. Biochem.	158	275-283	2021	FRDL1,NAS1,NAS2,YSL15,IRT1,FRO2,NRAMP1	OsFRDL1,OsNAS1,OsNAS2, OsNAS1,OsYSL15, OsYs7,OsIRT1, ZIP10, OsZIP10, OsZIP12, ZIP12,OsFRO2, OsFRO1,OsNramp1, OsNRAMP1, OsNramp6
49265	33215699	Hang N., Shi T., Liu Y., Ye W., Taier G., Sun Y., Wang K., Zhang W.	Overexpression of Os-microRNA408 enhances drought tolerance in perennial ryegrass.	Physiol Plant			2020	MIR408	miR408, osa-MIR408osa-miR408 osa-miR408-3p osa-miR408-5p, OsMIR408 
49266	33255501	Wang R., Wang H.L., Tang R.P., Sun M.Y., Chen T.M., Duan X.C., Lu X.F., Liu D., Shi X.C., Laborda P., Wang S.Y.	<i>Pseudomonas putida</i> Represses JA- and SA-Mediated Defense Pathways in Rice and Promotes an Alternative Defense Mechanism Possibly through ABA Signaling.	Plants (Basel)	9(12)		2020	CHIB1,HDAC1,GNS9,CHT4,ACS3,OC1,ACO7,_,HDA705,ACS1	Oschib1, chib1, PR-8, PR8, OsPR8, OsPR8b, PR8b,OsHDAC1, HDA702, OsHDA702, HDA1, OsHDA1, HDT702, OsHDT702,Gns9, OsGns9, OsPR8a, PR8a, OsBGL12, BGL12, BG12, OsBG12,Cht4(t)*(Chi4), Chi4, Cht4, OsChia2b, Chi-4, CHIT2, OsCHIT2, PR3, OsPR3,ACC3*, ACC3, OsACS3, OS-ACS3, OsACC3,Oc1*, Oc1, OC-I, SPOC-I, OsCP1, Oc, OCI, OsCYS1, OsPR6b, PR6b,OsACO7,OsPR2, PR2, OsGlu1, Glu1,OsHDA705,ACC1*, OsACS1, Os-ACS1, ACC1, OsACC1
49267	33182659	Chen L., Kuai P., Ye M., Zhou S., Lu J., Lou Y.	Overexpression of a Cytosolic 6-Phosphogluconate Dehydrogenase Gene Enhances the Resistance of Rice to <i>Nilaparvata lugens</i>.	Plants (Basel)	9(11)		2020	6PGDH1	Os6PGDH1, Os6PGDH, 6PGDH
49268	33255547	You M.K., Lee Y.J., Yu J.S., Ha S.H.	The Predicted Functional Compartmentation of Rice Terpenoid Metabolism by <i>Trans</i>-Prenyltransferase Structural Analysis, Expression and Localization.	Int J Mol Sci	21(23)		2020	SPS1,SPS4,SPS3,_,SPS2,GPPS,FPPS4,FPPS2,FPPS1,GGPPS2,FPPS3,GGPPS1	OsSPS1,OsSPS4,OsSPS3,OsFPS3, FPS3,OsSPS2,OsGPS, GPS, OsGPPS,OsFPPS4, OsFPS4, FPS4,OsFPPS2, OsFPS2, FPS2,OsFPPS1, FPPS, OsFPS,OsGGPPS2, OsGRP, GRP, OsGGPPS1, GGPPS1,OsFPPS3, OsFPS5, FPS5,OsGGPPS1
49269	33424882	Gho Y.S., Choi H., Moon S., Song M.Y., Park H.E., Kim D.H., Ha S.H., Jung K.H.	Phosphate-Starvation-Inducible S-like RNase Genes in Rice Are Involved in Phosphate Source Recycling by RNA Decay.	Front Plant Sci	11	585561	2020	RNS7,RNS6,PHR2,PT1,RNS5,RNS3,RNS2,LTN1,RNS4,RNS1,RNS8	OsRNS7,OsRNS6,OsPHR2, Os-PHR2,OsPT1, PHT1-1, OsPht1;1, Pht1;1, OsPHT1;1, PHT1;1,OsRNS5,OsRNS3, OsRNasePD2, RNasePD2,OsRNS2,LTN1, OsPHO2, PHO2.1, PHO2.2, PHO2, OsUBC35, UBC35,OsRNS4, OsRRP, RNaseDIS,OsRNS1,OsRNS8
49270	33177639	Jan R., Khan M.A., Asaf S., Lee I.J., Bae J.S., Kim K.M.	Overexpression of OsCM alleviates BLB stress via phytohormonal accumulation and transcriptional modulation of defense-related genes in Oryza sativa.	Sci Rep	10(1)	19520	2020	_,NH1	CM, OsCM,OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2, DLN5, OsDLN5,  OsBTBA1, BTBA1
49271	33143652	Neang S., Goto I., Skoulding N.S., Cartagena J.A., Kano-Nakata M., Yamauchi A., Mitsuya S.	Tissue-specific expression analysis of Na+ and Cl- transporter genes associated with salt removal ability in rice leaf sheath.	BMC Plant Biol.	20(1)	502	2020	NPF2.4,CBSCLC5,NHX1,NHX4,SLAC1,HKT1,SLAC7,GPA6,HKT9,HKT6,HKT4,SKC1,HKT3,SOS1,NHX2,HKT7,CBSCLC6,CLC2,NHX3,CCC1	OsNPF2.4, OsPTR2, PTR2,OsCBSCLC5, OsCLC5, CLC5,OsNHX1, OcNHX1, OgNHX1, OrNHX1, OpNHX1, ObNHX1,OsNHX4,OsSLAC1, OsSLAH1, SLAH1,OsHKT1, OsHKT2;1, HKT2;1, Ni (Nipponbare)-OsHKT1, Po (Pokkali)-HKT1, OsHKT1;1, HKT1;1,OsSLAC7,OsNHX5, NHX5, OsGPA6,OsHKT9, OsHKT2;4, HKT2;4,OsHKT6, OsHKT1;3, HKT1;3, OsHKT1;3_FL, OsHKT1;3_V1, OsHKT1;3_V2, OsHKT1;3_V3, OsHKT1;3_V4, OsHKT1;3_V5,OsHKT4, OsHKT1;1, HKT1;1, OsHKT2, RNC4, OsHKT1;1-FL, OsHKT1;1-V1, OsHKT1;1-V2, OsHKT1;1-V3, OsHKT1;1-V4, OsHKT1;1-V5, OsHKT1;1-V6, OsHKT1;1-V7, OsHKT1;1-V8,OsHKT8, HKT8, Os-HKT1;5, OsHKT1;5, HKT1;5, SKC1, qSKC-1(t), OsSKC1,OsHKT3, OsHKT2;3, HKT2;3,OsSOS1, OsNHA1, NHA1, SOS1/NHX7, NHX7, OsNHX7,OsNHX2,OsHKT7, OsHKT1;4, HKT1;4,OsCBSCLC6, OsCBSCLC6a, OsCBSCLC6b, OsCLC6, CLC6,CBSCLC3, OsCBSCLC3, OsCBSCLC3a, OsCBSCLC3b, OsCLC1, OsCLC-1, OsCLC2, OsCLC-2, CLC-2, OsCLC3, CLC3,OsNHX3, OsNHX2, NHX2,Os CCC1, OsCCC1, OsLAT9 
49272	33152024	Adem G.D., Ueda Y., Hayes P.E., Wissuwa M.	Genetic and physiological traits for internal phosphorus utilization efficiency in rice.	PLoS ONE	15(11)	e0241842	2020	SQD2.2,MGD3,MGD1,DGD2A,DGD1B,MGD2	OsSQD2, SQD2, OsSQD2.2,OsMGD3,OsMGD1,OsDGD2alpha DGD2alpha, OsDGD2A, OsDGD1, DGD1,OsDGD1beta, DGD1beta, OsDGD1B, OsDGD5, DGD5,OsMGD, MGD, OsMGD2, OsMGDG3, MGDG3
49273	33224159	Li Y., Liu F., Li P., Wang T., Zheng C., Hou B.	An <i>Arabidopsis</i> Cytokinin-Modifying Glycosyltransferase UGT76C2 Improves Drought and salt tolerance in Rice.	Front Plant Sci	11	560696	2020		
49274	33143610	Zhang Q., Sun T., Tuo X., Li Y., Yang H., Deng J.	A Novel Reversibly Glycosylated Polypeptide-2 of Bee pollen from Rape (Brassica napus L.): Purification and Characterization.	Protein Pept. Lett.			2020		
49275	33260392	Sattayachiti W., Wanchana S., Arikit S., Nubankoh P., Patarapuwadol S., Vanavichit A., Darwell C.T., Toojinda T.	Genome-Wide Association Analysis Identifies Resistance Loci for Bacterial Leaf Streak Resistance in Rice (<i>Oryza sativa</i> L.).	Plants (Basel)	9(12)		2020	PMEI7,_,RAR1	OsPEI, PEI, OsPMEI7,,Os RAR1, OsRAR1
49276	33153036	Khan A., Jalil S., Cao H., Tsago Y., Sunusi M., Chen Z., Shi C., Jin X.	The Purple Leaf (<i>pl6</i>) Mutation Regulates Leaf Color by Altering the Anthocyanin and Chlorophyll Contents in Rice.	Plants (Basel)	9(11)		2020	PAL1,C,CHS,F3'H,F3H1	OsPAL, Pal1*, Pal1, PAL, Pal_1, PalI, PAL2, OsPAL01, PAL01, OSPAL, CP-1, GP-1, OsPAL1, PAL3, OsPAL3,C, Cp, OsC1, Os-C1, C1, OsMyb6, Myb6, OsPL6, PL6, OsGL1E, GL1E, Os2R_MYB63, 2R_MYB63, OsC1PLSr, C1PLSr,CHS*, Oschs, chs, chas, OsCHS, OsCHS1, CHS1, OsPKS26, PKS26, OsCHS24, CHS24, OsCHS27, CHS27,OsF3'H, OsCYP75B3, CYP75B3, OsF3'H10, F3'H10, OsCYP71P3, CYP71P3,OsF3H-1, F3H-1, OsF3H1, OsF3H, F3H, OsF3H3, F3H3
49277	33304374	Fu R., Wang C., Shen H., Zhang J., Higgins J.D., Liang W.	Rice OsBRCA2 Is Required for DNA Double-Strand Break Repair in Meiotic Cells.	Front Plant Sci	11	600820	2020	COLD11,DMC1B,BRCA2,DMC1A,RAD51A2	OsRAD51A1, RAD51A1, OsCOLD11,OsDMC1B, OsDmc1B, Dmc1B, RiLIM15B ,OsBRCA2,OsDMC1A, OsDmc1A, Dmc1A, DMC1, OsDMC1, RiLIM15A, OsRad51,OsRad51A2, OsRAD51
49278	33186754	Wang J., Wang R., Fang H., Zhang C., Zhang F., Hao Z., You X., Shi X., Park C.H., Hua K., He F., Bellizzi M., Xuan Vo KT., Jeon J.S., Ning Y., Wang G.L.	Two VOZ transcription factors link an E3 ligase and an NLR immune receptor to modulate immunity in rice.	Mol Plant	14(2)	253-266	2021	PR10A,PIZT,PR1A,VOZ2,EIP8,APIP10	PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,Piz-t, Pi-zt, Pi-z(t), Pi2/Pizt, Pizt, Pi9, OsPiz-t,OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1, OsPR1b, PR1alpha, OsPR1alpha,OsVOZ2,OsEIP8, OsVOZ1, VOZ1 ,OsAPIP10,  OsRING239, RING239
49279	33199753	Chigira K., Kojima N., Yamasaki M., Yano K., Adachi S., Nomura T., Jiang M., Katsura K., Ookawa T.	Landraces of temperate japonica rice have superior alleles for improving culm strength associated with lodging resistance.	Sci Rep	10(1)	19855	2020	RLCK191	OsRLCK191
49280	33166596	Zhang H., Zhai N., Ma X., Zhou H., Cui Y., Wang C., Xu G.	Overexpression of OsRLCK241 confers enhanced salt and drought tolerance in transgenic rice (Oryza sativa L.).	Gene	768	145278	2021		
49281	33159253	Meng W., Xu L., Du Z.Y., Wang F., Zhang R., Song X., Lam S.M., Shui G., Li Y., Chye M.L.	RICE ACYL-COA-BINDING PROTEIN6 Affects Acyl-CoA Homeostasis and Growth in Rice.	Rice (N Y)	13(1)	75	2020	AOS2,ACBP6,MDHAR4,PRX37,_,CATB,MDHAR2,PIOX	OsAOS2, CYP74A2, OsAOS, OsAOS1,OsACBP6,OsMDAR4, MDAR4, OsMDHAR4,prx37, OsPRX37, POD37, OsPOD37,prx61, OsPRX61,CatB, CAT-B, OsCatB, OsCATB, OsCAT1B, CAT1B, CAT2, OsCAT2,OsMDAR2, OsMDHAR2, MDAR2, OsMDHAR4, MDHAR4,OsPIOX, RalphaO, alpha-DOX, OsDOX, DOX, alpha-DOX2, Osalpha-DOX2
49282	33889979	Hu Y., Li S., Fan X., Song S., Zhou X., Weng X., Xiao J., Li X., Xiong L., You A., Xing Y.	OsHOX1 and OsHOX28 Redundantly Shape Rice tiller angle by Reducing HSFA2D Expression and Auxin Content.	Plant Physiol.	184(3)	1424-1437	2020		
49283	33414802	Xiao Y., Zhang J., Yu G., Lu X., Mei W., Deng H., Zhang G., Chen G., Chu C., Tong H., Tang W.	Endoplasmic Reticulum-Localized PURINE PERMEASE1 Regulates plant height and grain weight by Modulating Cytokinin Distribution in Rice.	Front Plant Sci	11	618560	2020	RR2,PUP4,PUP1,RR1,RR4	rr2, Osrr2, OsRR2, Rra10, OsRRA10,OsPUP4, BG3/OsPUP4, BG3, OsBG3,OsPUP1,rr1, OsRR1, Rra9, OsRRA9,rr4, OsRR4, Rra3, OsRRA3
49284	33278597	Wang J., Ren Y., Liu X., Luo S., Zhang X., Liu X., Lin Q., Zhu S., Wan H., Yang Y., Zhang Y., Lei B., Zhou C., Pan T., Wang Y., Wu M., Jing R., Xu Y., Han M., Wu F., Lei C., Guo X., Cheng Z., Zheng X., Wang Y., Zhao Z., Jiang L., Zhang X., Wang Y.F., Wang H., Wan J.	Transcriptional activation and phosphorylation of OsCNGC9 confer enhanced chilling tolerance in rice.	Mol Plant	14(2)	315-329	2021		
49285	33284415	Zhang X., Long Y., Huang J., Xia J.	OsNAC45 is Involved in ABA Response and salt tolerance in Rice.	Rice (N Y)	13(1)	79	2020	ERF104,ERF99,SAMDC2,PM1,DREB1F,CYP89G1,NAC45,SIK1	DERF3, OsDERF3, OsERF#104, OsERF104, AP2/EREBP#152, AP2/EREBP152, RAP2, OsRAP2,OsERF#099, OsERF099, OsERF99, AP2/EREBP#080, AP2/EREBP80, OsEREBP2, EREBP2,SamDC2, AdoMetDC2, OsSAMDC2,AWPM-19, PM19, OsPM1, OsPM-1, OsPM19L1, PM19L1, OsAWPM-19, OsPM19,OsERF#027, OsERF027, OsERF27, ERF27, AP2/EREBP#081, AP2/EREBP81, OsDREB1F,OsCYP89G1,ONAC045, ONAC45, DLN243, OsDLN243, OsNAM, NAM,OsSIK1, OsER2, ER2, OsERL, ERL
49286	33375295	Shen M., Nie Y., Chen Y., Zhang X., Zhao J.	OsMre11 Is Required for Mitosis during Rice Growth and Development.	Int J Mol Sci	22(1)		2020	RAD50,NBS1,MRE11	Rad50, OsRad50,OsNBS1, OsNbs1,OsMRE11, Mre11
49287	33368943	Du D., Zhang C., Xing Y., Lu X., Cai L., Yun H., Zhang Q., Zhang Y., Chen X., Liu M., Sang X., Ling Y., Yang Z., Li Y., Lefebvre B., He G.	The CC-NB-LRR OsRLR1 mediates rice disease resistance through interaction with OsWRKY19.	Plant Biotechnol. J.			2020	PR1A,PR10A,RLR1,NH1,WRKY19	OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1, OsPR1b, PR1alpha, OsPR1alpha,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsRLR1,OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2, DLN5, OsDLN5,  OsBTBA1, BTBA1,OsWRKY19
49288	33326830	Mahesh H.B., Shirke M.D., Wang G.L., Gowda M.	In planta transcriptome analysis reveals tissue-specific expression of pathogenicity genes and microRNAs during rice-Magnaporthe interactions.	Genomics	113(1 Pt 1)	265-275	2021	GSTU19,OCPI2,ASR4,miR159B,MIR166N,CML14,GLP3-8,ICL,ASR3,GLP8-10,GLP12-2,MIR166L,UPS,CHT2,_,_,TF2	OsGSTU19, GSTU6, OsGSTU6, OsGSTU6.1, GSTU6.1,OsSRO1a, SRO1a, CPI2, OsCPI2, OCPI1,Asr4, OsASR6, OsASR2, Asr2, OsASR1, ASR1,OsmiR159b, osa-MIR159b,miR166n, osa-miR166n, osa-MIR166n, miR166j, osa-miR166j, osa-MIR166j, osa-miR166j-3p, osa-miR166j-5p,OsCML14,OsGLP3-8, OsCDP3.13, CDP3.13,OsEnS-107, EnS-107, OsI85, I85, OsICL, Osl85, l43, Osl43, OsL85,Asr3, OsASR5, OsASR1, Asr1,OsGLP8-10, OsRGLP2, RGLP2, OsCDP8.10, CDP8.10,OsGLP12-2, OsCDP12.2, CDP12.2,miR166l, osa-miR166losa-miR166l-3p osa-miR166l-5p,OsUPS, OsPUB41, PUB41, CMPG1, OsCMPG1,Cht2*, Cht2, RC7, OsChia1b, Chia1b, CHIT17, OsCHIT17,CYP72A1, OsCYP72A1,,OsTF2
49289	33264360	Qin Q., Li G., Jin L., Huang Y., Wang Y., Wei C., Xu Z., Yang Z., Wang H., Li Y.	Auxin response factors (ARFs) differentially regulate rice antiviral immune response against rice dwarf virus.	PLoS Pathog.	16(12)	e1009118	2020	IAA10,_,AAO,ASB2,TSA,MP,ARF5,ARF7A,IGPS,ARF16,ARF8,WRKY13,TIR1,YUCCA4,COW1,AO1,GH3-2	OsIAA10, OsIAA5, DLN71, OsDLN71,TRP1, OsTRP1,OsAAO, OsAAO1, AAO1,OASB2, OsASB2, TRP4, OsTRP4,OsTSA, pOsTSA, TSbeta, TSA1, OsTSA1,OsMP, OsARF5, OsARF11, DLN125, OsDLN125, OsMP/OsARF11,OsARF5,OsARF7a, OsARF19, ARF19, OsARF7,OsIGPS, TRPC, OsTRPC,OsARF16,OsARF8, OsARF12, ARF12,OsWRKY13,OsTIR1, OsFbox248, Fbox248, Os_F071, AFB,  OsFBL21, FBL21,OsYUCCA4, OsYUC4, YUC4, YUCCA6, OsYUCCA6,OsCOW1, oscow1, OsYUC8, YUC8, NAL7, OsNAL7, OsYUCCA8, YUCCA8, FMO, OsFMO(t), REIN7, YUC8/REIN7,AAO3, OsAAO3, OsAO1, AAO2, OsAAO2,OsGH3-2, OsGH3.2, GH3.2
49290	33343598	Broad R.C., Bonneau J.P., Beasley J.T., Roden S., Sadowski P., Jewell N., Brien C., Berger B., Tako E., Glahn R.P., Hellens R.P., Johnson A.A.T.	Effect of Rice <i>GDP-L-Galactose Phosphorylase</i> Constitutive Overexpression on Ascorbate Concentration, Stress Tolerance, and Iron Bioavailability in Rice.	Front Plant Sci	11	595439	2020	GGP	OsGGP
49291	33264008	Wang J., Deng Q., Li Y., Yu Y., Liu X., Han Y., Luo X., Wu X., Ju L., Sun J., Liu A., Fang J.	Transcription Factors <i>Rc</i> and <i>OsVP</i>1 Coordinately Regulate Preharvest Sprouting Tolerance in Red Pericarp Rice.	J. Agric. Food Chem.	68(50)	14748-14757	2020		
49292	33369525	Zhang Z., He Y., Li L., Zhang X., Xu X., Shi Y., Wu J.L.	Characterization of a novel allele encoding pheophorbide a oxygenase in rice.	Plant Signal Behav	16(3)	1864606	2021	EAS1 ,YGL10,SGRL,NYC3,CHL,SGR	OsPAO, PAO, OsACD1, ACD1, OsEAS1, RCD2, OsRCD2,CAO, OsCAO, CAO1, OsCAO1, Oslls1, Lls1, DVR, PGL,OsSGRL,nyc3, OsNYC3, PPH,OsCHL,sgr(t), sgr, OsSGR, OsSgr, SGR1, OsSGR1
49293	32761243	Hou D., Zhao Z., Hu Q., Li L., Vasupalli N., Zhuo J., Zeng W., Wu A., Lin X.	PeSNAC-1 a NAC transcription factor from moso bamboo (Phyllostachys edulis) confers tolerance to salinity and drought stress in transgenic rice.	Tree Physiol.	40(12)	1792-1806	2020		
49294	33424903	Xie Y., Jiang S., Li L., Yu X., Wang Y., Luo C., Cai Q., He W., Xie H., Zheng Y., Xie H., Zhang J.	Single-Cell RNA Sequencing Efficiently Predicts Transcription Factor Targets in Plants.	Front Plant Sci	11	603302	2020	PIR7B,GSTU37,NAC70	Pir7b,OsGSTU37,ONAC070, ONAC70, OsNTL6, NTL6, OsNAC78
49295	33299150	Zhan C., Lei L., Liu Z., Zhou S., Yang C., Zhu X., Guo H., Zhang F., Peng M., Zhang M., Li Y., Yang Z., Sun Y., Shi Y., Li K., Liu L., Shen S., Wang X., Shao J., Jing X., Wang Z., Li Y., Czechowski T., Hasegawa M., Graham I., Tohge T., Qu L., Liu X., Fernie A.R., Chen L.L., Yuan M., Luo J.	Selection of a subspecies-specific diterpene gene cluster implicated in rice disease resistance.	Nat Plants	6(12)	1447-1454	2020	JMJ705,CYP71Z30,TPS13,CYP71Z22,CYP71Z21 ,CYP71Z2	OsJMJ705,OsCYP71Z30,TPS3, OsSTP3, OsTPS28, TPS28, OsTPS13, TPS35, OsTPS35, OsECBS, ECBS,OsCYP71Z22,OsCYP71Z21 ,Oscyp71Z2
49296	33179343	Jing P., Kong D., Ji L., Kong L., Wang Y., Peng L., Xie G.	OsClo5 functions as a transcriptional co-repressor by interacting with OsDi19-5 to negatively affect salt stress tolerance in rice seedlings.	Plant J.	105(3)	800-815	2021	DI19-5,USP5,MS,EFA27	OsDi19-5,OsUSP5,MLS, OsMLS, OsMS, OsMST, MST,OsEFA27, OsClo5, Clo5, RD20, OsRD20
49297	33339449	Chung P.J., Chung H., Oh N., Choi J., Bang S.W., Jung S.E., Jung H., Shim J.S., Kim J.K.	Efficiency of Recombinant CRISPR/rCas9-Mediated miRNA Gene Editing in Rice.	Int J Mol Sci	21(24)		2020	MIR818B	OsmiR818b, miR818b, osa-miR818b, osa-MIR818b
49298	32727653	Gupta A., Shaw B.P.	Biochemical and molecular characterisations of salt tolerance components in rice varieties tolerant and sensitive to NaCl: the relevance of Na+ exclusion in salt tolerance in the species.	Funct. Plant Biol.	48(1)	72-87	2020		
49299	33270810	Ogata T., Ishizaki T., Fujita M., Fujita Y.	CRISPR/Cas9-targeted mutagenesis of OsERA1 confers enhanced responses to abscisic acid and drought stress and increased primary root growth under nonstressed conditions in rice.	PLoS ONE	15(12)	e0243376	2020	ERA1	OsERA1, OsERA1.1, OsERA1.2, OsABA1, ABA1, OsPFT-beta, PFT-beta
49300	33743915	Wang C., Cheng T., Liu H., Zhou F., Zhang J., Zhang M., Liu X., Shi W., Cao T.	Nano-selenium controlled cadmium accumulation and improved photosynthesis in indica rice cultivated in lead and cadmium combined paddy soils.	J Environ Sci (China)	103	336-346	2021		
49301	33347628	Wei H., Wang X., He Y., Xu H., Wang L.	Clock component OsPRR73 positively regulates rice salt tolerance by modulating OsHKT2;1-mediated sodium homeostasis.	EMBO J.	40(3)	e105086	2021	PCL1,HD3B,PRR73,HDAC10,GI,EPR1,ZTL1,FKF1,HKT1,CYP72A1,TOC1,CCA1,PRR59	OsPCL1, OsLUX, LUX, OsLVP2, LVP2,Hd17, EF7, Ef7, OsELF3-1, ELF3-1, OsELF3, ELF3, ELF3_chr.6, OsELF3.1, ELF3.1, OsELF3a, ELF3a,OsPRR73, Os-PRR73, Prr3, OsPRR3, OsRRA20, OsCCT11, CCT11,OsHDAC10, HDA714, OsHDA714, ASDAC, OsASDAC,OsGI, Gi, Os-GI,OsEPR1, OsLHY, LHY,OsZTL1, OsFbox066, OsFbox66, Os_F0484, OsLKP2, LKP2,  OsFBO8, FBO8,OsFbox609, Os_F0370, OsFKF1,  OsFBO10, FBO10,OsHKT1, OsHKT2;1, HKT2;1, Ni (Nipponbare)-OsHKT1, Po (Pokkali)-HKT1, OsHKT1;1, HKT1;1,CYP72A1,OsTOC1, OsPRR1, Os-PRR1, PRR1, OsRRA21, OsCCT07,OsCCA1, OsLHY, LHY, LHY-like_chr.8, COC1, DLN203, OsDLN203, LEM1, OsLEM1, Nhd1, OsNhd1,OsPRR59, Os-PRR59, Prr5, OsPRR5, OsCCT38, CCT38
49302	33424163	Valette M., Rey M., Dor? J., Gerin F., Wisniewski-Dy? F.	Identification of a small set of genes commonly regulated in rice roots in response to beneficial rhizobacteria.	Physiol Mol Biol Plants	26(12)	2537-2551	2020	PR10B,DXS3,_,WRKY62,KS8,RR9,PR1B,CPS4,_,IPD3,D305,WAK74,PAL1,FAD2-3	RPR10b, PR-10b, PR10b, PBZ1, PBZ-1, OsPBZc, OsPR10b, BetV, OsBetV,OsDXS, OsDXS3, dxs3, DXS2, OsDXS2,,OsWRKY62, OsWRKY62.1, OsWRKY62.2, XB10, OsWRKY62-1, OsWRKY62-2,OsKS8, KS8, KSL8, OsKSL8, DTC2, OsDTC2, OsDTC2/OsKS8, OsTPS32, TPS17, OsTPS17, KSL11, OsKSL11,OsRR9, Rra1, OsRRA1, OsRR10, RR10,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1, OsPR1a, PR1a,OsCPS4, CYC1, OsCYC1, OsCyc1, cpsl3, OsCPSL3, OsCPSsyn, OsCyc1/OsCPS4, OsTPS15, Os-CPS4, TPS11, OsTPS11,,OsIPD3, Osipd3, CYCLOPS, IPD3/CYCLOPS, OsCYCLOPS,OsD305, OsMRLK62, MRLK62,OsWAK74,OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6,OsFAD2-3, OsaFAD2-2, FAD2-2
49303	33375756	Li C., Liu C.Q., Zhang H.S., Chen C.P., Yang X.R., Chen L.F., Liu Q.S., Guo J., Sun C.H., Wang P.R., Deng X.J.	<i>lps1</i>, Encoding Iron-Sulfur Subunit SDH2-1 of succinate dehydrogenase, Affects leaf senescence and grain yield in Rice.	Int J Mol Sci	22(1)		2020	LPS1,SDH2-2	SDH2, SDHB, sdhB, RPS14, rps14, sdh2-1, SDH2-RPS14, OsLPS1, OsSDH2-1 ,sdh2-2, OsSDH2-2 
49304	33359411	Tyagi V., Parihar V., Singh D., Kapoor S., Kapoor M.	The DEAD-box RNA helicase eIF4A1 interacts with the SWI2/SNF2-related chromatin remodelling ATPase DDM1 in the moss Physcomitrella.	Biochim Biophys Acta Proteins Proteom	1869(3)	140592	2021		
49305	33890113	Zhang J., Guo Y., Fang Q., Zhu Y., Zhang Y., Liu X., Lin Y., Barkan A., Zhou F.	The PPR-SMR protein ATP4 Is Required for Editing the Chloroplast rps8 mRNA in Rice and Maize.	Plant Physiol.	184(4)	2011-2021	2020		
49306	33278354	Zhang S., Zhang Y., Li K., Yan M., Zhang J., Yu M., Tang S., Wang L., Qu H., Luo L., Xuan W., Xu G.	Nitrogen Mediates flowering time and Nitrogen Use Efficiency via Floral Regulators in Rice.	Curr. Biol.	31(4)	671-683.e5	2021	CCA1,ABC1,HD3A	OsCCA1, OsLHY, LHY, LHY-like_chr.8, COC1, DLN203, OsDLN203, LEM1, OsLEM1, Nhd1, OsNhd1,OsABC1, SPL32, OsSPL32, OsGLU, OsFd-GOGAT, Fd-GOGAT, ABC1/ OsFd-GOGAT ,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a 
49307	33360213	Fan W., Liu C., Cao B., Ma S., Hu J., Xiang Z., Zhao A.	A meta-analysis of transcriptomic profiles reveals molecular pathways response to cadmium stress of Gramineae.	Ecotoxicol. Environ. Saf.	209	111816	2021	CYP89A2,MRP3,_,USP3,ASR3,RRJ1,GSTU19,IGPS,SALT,SCP45,HSR203J,GSTU50,STP25,UGT703A2,_	OsCYP89A2,OsABCC3, ABCC3, OsMRP3,,OsUSP3, OsUSP5, USP5,Asr3, OsASR5, OsASR1, Asr1,OsRRJ1,OsGSTU19, GSTU6, OsGSTU6, OsGSTU6.1, GSTU6.1,OsIGPS, TRPC, OsTRPC,salT*(sal1), SalT1*, sal1, Sal1, SALT, ML, SalT, OsSalT, OsJRL, JRL, Osl43, OsL43, OsMBL1, MBL1, OsJRL01, JRL01, OsJRL1, JRL1,OsSCP45, OsSCP46, SCP46,Hsr203j, OsHsr203j,OsGSTU50,OsSTP14, STP14, OsSTP25,OsUGT703A2,OsbHLH035, bHLH035, OsbHLH35, bHLH35, bHLH107
49308	33333227	Liu C., Tu Y., Liao S., Fu X., Lian X., He Y., Xie W., Wang G.	Genome-wide association study of flowering time reveals complex genetic heterogeneity and epistatic interactions in rice.	Gene	770	145353	2021		
49309	33955496	Zhang S., Zhu L., Shen C., Ji Z., Zhang H., Zhang T., Li Y., Yu J., Yang N., He Y., Tian Y., Wu K., Wu J., Harberd N.P., Zhao Y., Fu X., Wang S., Li S.	Natural allelic variation in a modulator of auxin homeostasis improves grain yield and nitrogen use efficiency in rice.	Plant Cell			2020	ARF6A,DNR1,D3,ARF24,NRT2.4,ARF6B,WFP,_,ARF16,ARF17,NPF6.5,ARF5,FC1,ARF7A,HTNE	OsARF6a, OsARF6, ARF6,OsDNR1,d3, dwf3, D3/OsMAX2, Os_F0760, SOL1, OsORE9, ORE9, MAX2, OsRFPH2-10, RFPH2-10, OsD3,  OsFBL27, FBL27,OsARF24,OsNRT2.4,OsARF6b, OsARF25, ARF25,OsSPL14, SPL14, IPA1, WFP/IPA1, OsSPL14/WFP/IPA1, OsIPA1,  IPA1/OsSPL14,OsNIA2, NIA2, OsNR2, NR2, OsNR3, NR3, OsNR1.2, NR1.2,OsARF16, OsARF2, OsARF1,OsARF17,OsNRT1.1B, NRT1.1B, OsNPF6.5,OsARF5,fc1, OsTB1, tb1, OsTB1/FC1, Os TB1, TB1, OsFC1, MP3, OsMP3,OsARF7a, OsARF19, ARF19, OsARF7,NRT2.3, OsNRT2.3, OsNRT2;1, OsNRT2.3a, OsNRT2.3b, OsNRT2;3a, OsNRT2.5 
49310	33443630	Han J., Wang X., Wang F., Zhao Z., Li G., Zhu X., Su J., Chen L.	The Fungal Effector Avr-Pita Suppresses Innate Immunity by Increasing COX Activity in Rice Mitochondria.	Rice (N Y)	14(1)	12	2021	PAL1,PR10A,COX11	OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsCOX11
49311	33409665	Fang Z., Wu B., Ji Y.	The Amino Acid Transporter OsAAP4 Contributes to Rice Tillering and grain yield by Regulating Neutral Amino Acid Allocation through Two Splicing Variants.	Rice (N Y)	14(1)	2	2021	AAP10B	OsAAP10B, OsAAP4, AAP4, OsAAP4a, OsAAP4b, OsAAP4c
49312	33828575	Li Y., Liao S., Mei P., Pan Y., Zhang Y., Zheng X., Xie Y., Miao Y.	<i>OsWRKY93</i> Dually Functions Between leaf senescence and in Response to Biotic Stress in Rice.	Front Plant Sci	12	643011	2021	WRKY29,WRKY49,WRKY73,WRKY10,WRKY2,WRKY26,WRKY47,WRKY72,WRKY113,WRKY69,WRKY14	OsWRKY29,OsWRKY49,OsWRKY73,OsWRKY10,OsWRKY2,OsWRKY26, OsWRKY59, DLN19, OsDLN19,OsWRKY47,OsWRKY72, WRKY-72,OsWRKY113,OsWRKY69,OsWRKY14
49313	33449977	M T AP., Ramchander S., K K K., Muthamilarasan M., Pillai M.A.	Assessment of efficacy of mutagenesis of gamma-irradiation in plant height and days to maturity through expression analysis in rice.	PLoS ONE	16(1)	e0245603	2021	BRD2,SD1,D35,D3,SLR1,KO4	brd2, OsBRD2, Dim/dwf1, Dim, dwf1, OsDWF1, DWF1, LTBSG1, OsLTBSG1, LHDD10, OsLHDD10, OsD-LDH3, D-LDH3,sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2, OsPHQ1, OsPHq1, PHq1,d35, d35(t), dwf30, OsKOL2, KOL2, KO2, OsKO2, OSKO2, KO, CYP701A, CYP701A6, Os KO2, OsKOL2/CYP701A,d3, dwf3, D3/OsMAX2, Os_F0760, SOL1, OsORE9, ORE9, MAX2, OsRFPH2-10, RFPH2-10, OsD3,  OsFBL27, FBL27,slr1-1, slr1, slr, GAI, OsGAI, OsSLR1, Os SLR1, OsRGA1, OsGRAS-18, OsGRAS-18, GRAS-18, GRAS18, SLR-1,OsKO4, OsKOL4, KOS1, CYP701A8, OsCYP701A8, OsKO2, CYP701A8/OsKOL4
49314	33444362	Zhen X., Zheng N., Yu J., Bi C., Xu F.	Autophagy mediates grain yield and nitrogen stress resistance by modulating nitrogen remobilization in rice.	PLoS ONE	16(1)	e0244996	2021	ATG8B	OsATG8b, Atg8b
49315	33471829	Baiya S., Pengthaisong S., Kitjaruwankul S., Ketudat Cairns JR.	Structural analysis of rice Os4BGlu18 monolignol beta-glucosidase.	PLoS ONE	16(1)	e0241325	2021	BGLU18	Os4bglu18, Os4Bglu18, Os4BGlu18
49316	33423130	Zhao X., Zhang T., Feng H., Qiu T., Li Z., Yang J., Peng Y.L., Zhao W.	OsNBL1, a Multi-Organelle Localized Protein, Plays Essential Roles in Rice Senescence, disease resistance, and salt tolerance.	Rice (N Y)	14(1)	10	2021	WRKY45,RCCR1,LEA3-1,NAC58,NAC122,NBL1,RPS2,NAC10,RPM1,RPP8,RPP13,_,VYL,HAK5,ONAC2,ICL,SGR	OsWRKY45, OsWRKY45-1, OsWRKY45-2, WRKY45-1, WRKY45-2,OsRCCR1, OsRCCR, RCCR,OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3, OsLEA3A, LEA3A,OsNAP, NAP, ONAC058, ONAC58, Os PS1, PS1, OsCTb1, CTb1,OsNAC10, NAC10, ONAC122, NAC122, OsSNAC10, SNAC10,OsNBL1,OsRPS2,ONAC010, ONAC10, OsSTA199, OsNAC3, NAC3,OsRPM1,OsRPP8,OsRPP13,OsRP1L1, RP1L1, OsBBR1, BBR1, rNBS33,OsClpP6, ClpP6, CLP6, NAL9, NAL9/VYL,OsHAK5, FCO13, OsFCO13,SNAC1, snac1, OsNAC9, ONAC002, ONAC2, ONAC033, ONAC33, ONAC043, ONAC43, ONAC044, ONAC44, OsNAC19, NAC19, SNAC1/ONAC002, OsSNAC1, OsNAC9, OsNAC1,OsEnS-107, EnS-107, OsI85, I85, OsICL, Osl85, l43, Osl43, OsL85,sgr(t), sgr, OsSGR, OsSgr, SGR1, OsSGR1
49317	33505835	Neeraja C.N., Barbadikar K.M., Krishnakanth T., Bej S., Rao I.S., Srikanth B., Rao D.S., Subrahmanyam D., Rao P.R., Voleti S.R.	Down regulation of transcripts involved in selective metabolic pathways as an acclimation strategy in nitrogen use efficient genotypes of rice under low nitrogen.	3 Biotech	11(2)	80	2021		
49318	33509071	Zhong H., Liu S., Meng X., Sun T., Deng Y., Kong W., Peng Z., Li Y.	Uncovering the genetic mechanisms regulating panicle architecture in rice with GPWAS and GWAS.	BMC Genomics	22(1)	86	2021	_,HD2,COM1,TA2	,Hd2(t), Hd2, qHD2(t), OsPRR37, Os-PRR37, PRR37, Prr4, OsPRR4, DTH7, Os DTH7, OsCCT28, CCT28, Ghd7.1, PRR37/Hd2, EH7-2, EH7-2/Hd2, Hd2/PRR37, PRR37-1a, PRR37-1b, PRR37-1c, PRR37-2a, PRR37- 2, HD7.2,OsCOM1,ROS1A, ROS1a, DME1, OsROS1A, OsROS1, ROS1, mOsROS1, ROS1A/DNG702, DNG702, OsDNG702
49319	33377200	Liang L., Zhang Z., Cheng N., Liu H., Song S., Hu Y., Zhou X., Zhang J., Xing Y.	The transcriptional repressor OsPRR73 links circadian clock and photoperiod pathway to control heading date in rice.	Plant Cell Environ.	44(3)	842-855	2021	GHD7,GI,HD3B,EF1,RFT1,HD3A,PRR73,PHYB,TOC1,CCA1	Ghd2, Ghd7, OsGhd7, OsCCT26, OsCMF8, OsI, Ghd7/Hd4, Hd4, EH7-1/Hd4, Ghd7-0a, EH7-1, EH7/Ghd7, EH7, OsEH7, GLW7.1, OsGLW7.1,OsGI, Gi, Os-GI,Hd17, EF7, Ef7, OsELF3-1, ELF3-1, OsELF3, ELF3, ELF3_chr.6, OsELF3.1, ELF3.1, OsELF3a, ELF3a,Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,FT-L 3, OsFTL3, FTL3, FT-L3, RFT, OsRFT1,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,OsPRR73, Os-PRR73, Prr3, OsPRR3, OsRRA20, OsCCT11, CCT11,phyB, PHYB1, OsPHYB, OsphyB, OsYHB, YHB, OsPHYB/OsYHB,OsTOC1, OsPRR1, Os-PRR1, PRR1, OsRRA21, OsCCT07,OsCCA1, OsLHY, LHY, LHY-like_chr.8, COC1, DLN203, OsDLN203, LEM1, OsLEM1, Nhd1, OsNhd1
49320	33927731	Lee S.K., Hong W.J., Silva J., Kim E.J., Park S.K., Jung K.H., Kim Y.J.	Global Identification of <i>ANTH</i> Genes Involved in Rice pollen Germination and Functional Characterization of a Key Member, OsANTH3.	Front Plant Sci	12	609473	2021	ANTH12,ANTH1,ANTH4,ANTH5,ANTH16,ANTH9,ANTH13,ANTH7,ANTH15,ANTH3,ANTH2,ANTH17,ANTH11,ANTH10,ANTH6,ANTH8,ANTH14	OsANTH12,OsANTH1,OsANTH4,OsANTH5,OsANTH16,OsANTH9,OsANTH13,OsANTH7,OsANTH15,  OsFBO21, FBO21,OsANTH3,OsSTA37, OsANTH2,OsANTH17,OsSTA176, OsANTH11,OsANTH10,OsANTH6,OsANTH8,OsANTH14
49321	33471334	Liu J., Liang D., Yao L., Zhang Y., Liu C., Liu Y., Wang Y., Zhou H., Kelliher T., Zhang X., Bandyopadhyay A.	Rice Haploid Inducer Development by Genome Editing.	Methods Mol. Biol.	2238	221-230	2021		
49322	33474591	Kannan P., Chongloi G.L., Majhi B.B., Basu D., Veluthambi K., Vijayraghavan U.	Characterization of a new rice OsMADS1 null mutant generated by homologous recombination-mediated gene targeting.	Planta	253(2)	39	2021	DH1,MADS13,DP1,KAN1,ETT2,MADS58,GW8,RAP1A,PAP2,CFO1,IG1,LHS1,PIN1B	OsDH1, OsLBD2-1, LBD2-1, OsLOB16, LOB16,OsMADS13, MAF1, RMADS206,dp1, pa, DP1/PAL1, PAL1, OsDP1, OsAHL11, AHL11,OsKAN1, OsKAN2, KAN2,OsARF2, ARF2, OsETT2, ARF3a, OsARF3a, DLN16, OsDLN16, ARF3,OsMADS58,SPL16, OsSPL16, SLP1, OsSLP1, qGW8, OsGW8,OsMADS15, FDRMADS3, RMADS215, MADS15, DEP,MADS34, OsMADS34, RMADS212/RMADS217/RMADS221, OsPAP2/MADS34, MADS34/PAP2, PAP2/OsMADS34, OsMADS34/PAP2, OsMADS19,OsMADS32, MADS32, OsCFO1, CFO1/OsMADS32, TRI1, OsTRI1 , OsMADS32/CFO, CFO, OsCFO,CRL1L3, CRLL3, OsCrll3, OsIG1, OsLBD1-9, LBD1-9, OsAS2, AS2,OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO, OsLHS1, OsLG3b, LG3b, qLGY3, LGY3, DLN80, OsDLN80, OLR, OsOLR, GW3p6, OsGW3p6, OsMADS1GW3p6, MADS1GW3p6, qLGY3/OsLG3b/GW3p6,PIN1A, OsPIN1A, OsPIN1a, REH1, OsPIN1, OsPIN1b, REH1/OsPIN1
49323	33584777	Tiong J., Sharma N., Sampath R., MacKenzie N., Watanabe S., Metot C., Lu Z., Skinner W., Lu Y., Kridl J., Baumann U., Heuer S., Kaiser B., Okamoto M.	Improving Nitrogen Use Efficiency Through Overexpression of alanine aminotransferase in Rice, Wheat, and Barley.	Front Plant Sci	12	628521	2021	NIR2,_,AMT1;3,ALDH7,RRJ1,CGS1,_,KS7,ERF93,ERF91	OsNiR2, NiR2,OsNIA1, OsNia1, NIA1, Nia1, OsNR, NR, OsNR2, NR2, NIA2,OsAMT1;3, AMT1-3, Osamt1-2, "OsAMT1,2", OsAMT1;2, OsAMT1.3, AMT1.2,OsALDH7, osaldh7, LDH, ALDH7B7, OsALDH7B6, ALDH7B6, OsAnt1, Ant1,OsRRJ1,OsaCGS1, OsCGS1,OsTPS13, TPS13, TPS3, OsTPS3,OsKS7, KS7, KSL7, OsKSL7, DTC1, OsDTC1, OsKS3, OsDTC1/OsKS7, OsTPS6, TPS6, TPS38, OsTPS38,OsERF1, ERF1, OsERF#093, OsERF093, OsERF93, AP2/EREBP#168, AP2/EREBP168,OsERF#091, OsERF091, OsERF91, AP59, OsAP59, AP2/EREBP#147, AP2/EREBP147, OsBIERF3, BIERF3
49324	33386861	Zheng P., Liu Y., Liu X., Huang Y., Sun F., Wang W., Chen H., Jan M., Zhang C., Yuan Y., Tan B.C., Du H., Tu J.	OsPPR939, a nad5 splicing factor, is essential for plant growth and pollen development in rice.	Theor. Appl. Genet.	134(3)	923-940	2021	NDA,PPR920,S6K1,NDA2,NAD5,AOX1A	OsNDA, NDB3, OsNDB3, OsNDB2, NDB2,OsPPR920, OsPPR939, PPR939,OsS6K1, OsAGC7, AGC7,OsNDA2,nad5, OsNAD5,Ao1-1, AOX1a, OsAOX1a, AOX 1a
49325	33475863	Kim J.S., Chae S., Jun K.M., Lee G.S., Jeon J.S., Kim K.D., Kim Y.K.	Rice protein-binding microarrays: a tool to detect cis-acting elements near promoter regions in rice.	Planta	253(2)	40	2021	WOX8,SGSD3,RISBZ1	OsWOX8, Os WOX8, OsWOX13, WOX13, OsWOX9B,OsWRKY36, WRKY36, OsSGSD3,OsbZIP58, bZIP58, OsEnS-92, OsSMF1, SMF1, OsRISBZ1, RISBZ1/bZIP58
49326	33525652	Deushi R., Toda E., Koshimizu S., Yano K., Okamoto T.	Effect of Paternal Genome Excess on the Developmental and Gene Expression Profiles of Polyspermic Zygotes in Rice.	Plants (Basel)	10(2)		2021	HMGB710,PLT6	OsHMGB710, OsNFD101, NFD101,OsPLT6, AP2/EREBP#118, AP2/EREBP118, BBM1, OsBBM1, OsBBML1, BBML1, OsASGR-BBML1, ASGR-BBML1
49327	33450368	Ma H., Li J., Ma L., Wang P., Xue Y., Yin P., Xiao J., Wang S.	Pathogen-inducible OsMPKK10.2-OsMPK6 cascade phosphorylates the Raf-like kinase OsEDR1 and inhibits its scaffold function to promote rice disease resistance.	Mol Plant	14(4)	620-632	2021		
49328	33719311	Zhou D., Shen W., Cui Y., Liu Y., Zheng X., Li Y., Wu M., Fang S., Liu C., Tang M., Yi Y., Zhao M., Chen L.	APICAL SPIKELET ABORTION (ASA) Controls Apical Panicle Development in Rice by Regulating Salicylic Acid Biosynthesis.	Front Plant Sci	12	636877	2021	_,ASA,PAL1,_	OsPAL05, PAL05, OsPAL3, PAL5, PAL3, OsPAL2;3, PAL2;3, OsPAL2-1, PAL2-1,OsNIP3;1, NIP3;1, NIP3-1, OsNIP3.1, NIP3.1, OsASA,OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6,OsPAL07, OsPAL, PAL07, OsPAL6, PAL6, PAL1, OsPAL7, PAL7
49329	33409767	Han Y., Zhou S.D., Fan J.J., Zhou L., Shi Q.S., Zhang Y.F., Liu X.L., Chen X., Zhu J., Yang Z.N.	OsMS188 Is a Key Regulator of Tapetum Development and Sporopollenin Synthesis in Rice.	Rice (N Y)	14(1)	4	2021	MS2,TDR,CYP703A3,PKS10,ABCG15,BHLH142,LAP6,CYP704B2,TDF1,MS188,UDT1	OsMS2, OsDPW, DPW, DPW1, OsDPW1, OsFAR2, FAR2,tdr, OsbHLH005, bHLH005, OsbHLH5, bhlh5, TDR1, OsTDR, OsTDR1, OsMYC5, MYC5,OsCYP703A3,OsPKS10, OsPKS2, PKS2, OsCHS10, CHS10,OsABCG15, PDA, PDA1, OsABCG15/PDA1,OsbHLH142, bHLH142, TIP2, OsTIP2, TIP2/TDR/bHLH142,OsPKS1, PKS1, YY2, OsPKS21, PKS21, OsLAP6/OsPKS1, OsLAP6, OsCHS22, CHS22,OsCYP704B2,OsTDF1, MYB35, OsMYB35,OsMYB80, MYB80, OsMS188, Os2R_MYB44, 2R_MYB44, OsMYB103/OsMYB80/OsMS188/BM1, OsMYB103, MYB103,Udt1, bHLH164, OsUDT1, OsbHLH164 
49330	33401385	Min M.K., Kim R., Hong W.J., Jung K.H., Lee J.Y., Kim B.G.	OsPP2C09 Is a Bifunctional Regulator in Both ABA-Dependent and Independent Abiotic Stress Signaling Pathways.	Int J Mol Sci	22(1)		2021	PP2C6,PYL/RCAR3,PP2C9,PP2C30	OsPP2C06/OsABI2, OsPP2C06, OsPP2C6, OsABI2, OsPP10, ABI2, OsABIL1, ABIL1,OsPYL/RCAR3, PYL3, OsPYL3, OsPYL10, PYL10, OsRCAR1, RCAR1 ,OsPP15, PP15, OsPP2C09, PP2C09, OsPP2C9, OsPP2C3,OsPP2C30, OsPP48, PP48
49331	33868352	Zhang H., Zheng D., Yin L., Song F., Jiang M.	Functional Analysis of <i>OsMED16</i> and <i>OsMED25</i> in Response to Biotic and Abiotic Stresses in Rice.	Front Plant Sci	12	652453	2021	NH1,SFR6,LTI6A,CHT3,PFT1,PR1A,WRKY45,MYB48,CDPK13,TRXH,_	OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2, DLN5, OsDLN5,  OsBTBA1, BTBA1,OsMed16_1, Med16_1, OsSFR6, OsMED16, MED16,OsLti6a, Lti6a, OsLTI6A, OsRCI2-10,Cht3*, Cht3, Cht-3, CH6, OsChia1c, CHI7, OsCHI11, CHI11, OsPR3, PR3,OsPFT1, OsMED25_1, MED25_1, OsMED25, MED25, OsvWA27, vWA27,OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1, OsPR1b, PR1alpha, OsPR1alpha,OsWRKY45, OsWRKY45-1, OsWRKY45-2, WRKY45-1, WRKY45-2,OsMYB48, OsMYB48-1, OsMYB48-2, OsMYB59, MYB59, Os2R_MYB19, 2R_MYB19 ,OsCDPK13, OsCPK13, OsCDPK7, CDPK7, OsCPK13-1, OsCPK13-2,trxh, Trx-H, OsTRXh1, TRXh1, OsTrxh1, Os1, OsTrx23, Trx23, RPP13-1,Lox2:Os:1, OsLOX9, LOX9, OsLOX8, LOX8, OsLOX2, LOX2, OsRLL, OsHI-LOX, HI-LOX, RLL2 LOX, RLL2, Lox2osPil, OsLOX2;1, LOX2;1, OsLOX1, OsLOX7, LOX7
49332	33409935	Bhutia K.L., Nongbri E.L., Sharma T.O., Rai M., Tyagi W.	A 1.84-Mb region on rice chromosome 2 carrying SPL4, SPL5 and MLO8 genes is associated with higher yield under phosphorus-deficient acidic soil.	J. Appl. Genet.	62(2)	207-222	2021		
49333	33868323	Zhang D., Zhang M., Liang J.	RGB1 Regulates Grain Development and Starch Accumulation Through Its Effect on <i>OsYUC11</i>-Mediated Auxin Biosynthesis in Rice Endosperm Cells.	Front Plant Sci	12	585174	2021	RGB1,YUCCA11,HAP3K	OsWD40-80, RGbeta1, OsRGB1,  OsDWD38, DWD38,OsYUCCA11, OsYUC11, YUC11,OsHAP3K/OsNF-YB1, OsHAP3K, OsNF-YB1, NF-YB1, nf-yb1, OsLEC1, OsNF-YB-1, NFYB1, OsEnS-41
49334	33408412	Liu Y., Wang H., Jiang Z., Wang W., Xu R., Wang Q., Zhang Z., Li A., Liang Y., Ou S., Liu X., Cao S., Tong H., Wang Y., Zhou F., Liao H., Hu B., Chu C.	Genomic basis of geographical adaptation to soil nitrogen in rice.	Nature	590(7847)	600-605	2021	LBD37,DLT,LBD39,TCP19	OsLBD37, OsLBD3-8, LBD3-8,dlt, OsGRAS32, OsDLT, OsDLT1, DTL1, OsGRAS-32, OsGRAS32, GRAS-32, GRAS32, SMOS2/DLT, SMOS2, OsSMOS2, OsGS6, GS6,OsLBD39,OsTCP19
49335	33581623	Bhaskar A., Paul L.K., Sharma E., Jha S., Jain M., Khurana J.P.	OsRR6, a type-A response regulator in rice, mediates cytokinin, light and stress responses when over-expressed in Arabidopsis.	Plant Physiol. Biochem.	161	98-112	2021		
49336	33420909	Nayyeripasand L., Garoosi G.A., Ahmadikhah A.	Genome-Wide Association Study (GWAS) to Identify Salt-Tolerance QTLs Carrying Novel Candidate Genes in Rice During Early Vegetative Stage.	Rice (N Y)	14(1)	9	2021	PRX22,_	prx22, OsPRX22, OsPOD,
49337	33790929	Yang L., Lei L., Li P., Wang J., Wang C., Yang F., Chen J., Liu H., Zheng H., Xin W., Zou D.	Identification of Candidate Genes Conferring cold tolerance to Rice (<i>Oryza sativa</i> L.) at the Bud-Bursting Stage Using Bulk Segregant Analysis Sequencing and Linkage Mapping.	Front Plant Sci	12	647239	2021	_	
49338	33486382	Xue W., Wang P., Tang L., Zhang C., Wang C., Huang Y., Zhang X., Li Y., Zhao B., Liu Z.	Citric acid inhibits Cd uptake by improving the preferential transport of Mn and triggering the defense response of amino acids in grains.	Ecotoxicol. Environ. Saf.	211	111921	2021	LCD1,NRAMP3,NRAMP1,NRAMP2	NRAMP5, OsNRAMP5, OsNramp5, OsLCD1,OsNramp3, OsNRAMP3,OsNramp1, OsNRAMP1, OsNramp6,OsNramp2, OsNRAMP2
49339	33409869	Su L., Yang J., Li D., Peng Z., Xia A., Yang M., Luo L., Huang C., Wang J., Wang H., Chen Z., Guo T.	Dynamic genome-wide association analysis and identification of candidate genes involved in anaerobic germination tolerance in rice.	Rice (N Y)	14(1)	1	2021	GA2OX8,VP1,DI19-1,_	OsGA2ox8,Vp1* (OSVP1), OsVP1, OsVp1, Vp1, ABI3, OsABI3, OsLFL4, OsVp-1, OSVP1,OsDi19-1,
49340	33201594	Li C., Zhang J., Ren Z., Xie R., Yin C., Ma W., Zhou F., Chen H., Lin Y.	Development of 'multiresistance rice' by an assembly of herbicide, insect and disease resistance genes with a transgene stacking system.	Pest Manag. Sci.	77(3)	1536-1547	2021		
49341	33435489	Ahn H.R., Kim Y.J., Lim Y.J., Duan S., Eom S.H., Jung K.H.	Key Genes in the Melatonin Biosynthesis Pathway with Circadian Rhythm Are Associated with Various Abiotic Stresses.	Plants (Basel)	10(1)		2021	CYP71K9,TDC2,_,PHYB,GI,ASMT9	OsCYP71K9, T5H,OsTDC2, OsTDC3,SNAT,phyB, PHYB1, OsPHYB, OsphyB, OsYHB, YHB, OsPHYB/OsYHB,OsGI, Gi, Os-GI,ASMT, OsASMT9, OsCOMT14, COMT14
49342	33747027	Yuan J., Meng J., Liang X., Yang E., Yang X., Chen W.F.	Biochar's Leacheates Affect the Abscisic Acid Pathway in Rice Seedlings Under Low Temperature.	Front Plant Sci	12	646910	2021	PYL/RCAR9,PSBR3,BZIP12,_,RAB16A,BZIP46,PSBR	OsPYL/RCAR9, PYL9, OsPYL9, OsPYL2, PYL2,OsPsbR3, PsbR3,OsbZIP12, OsABF1, ABF1, OsOSE2, OSE2, OsbZIP12/OsABF1,OsABA45, ABA45, OsGDP, GDP, OsASR, ASR,Rab16A, rab21, RAB21, OsRab21, OsRAB21, OsRAB-21, OsRab16A, OsLEA29, rab16A, OsRAB16A,ABL1, bZIP46, OsABL1, OsbZIP46, OsAREB8, OsABF2, ABF2, OsABF3, ABF3, OsbZIP46CA1, OsZIP46, ZIP46, OsbZIP46/OsABF2,PsbR, OsPsbR1, PsbR1, OsPSBR
49343	33440058	Zhou J., Yuan M., Zhao Y., Quan Q., Yu D., Yang H., Tang X., Xin X., Cai G., Qian Q., Qi Y., Zhang Y.	Efficient deletion of multiple circle RNA loci by CRISPR-Cas9 reveals Os06circ02797 as a putative sponge for OsMIR408 in rice.	Plant Biotechnol. J.			2021	05CIRC02465,MIR408,02CIRC25329,03CIRC00204,06CIRC02797	Os05circ02465,miR408, osa-MIR408osa-miR408 osa-miR408-3p osa-miR408-5p, OsMIR408 ,Os02circ25329,Os03circ00204,Os06circ02797
49344	33469925	Zhang T., You J., Zhang Y., Yao W., Chen W., Duan Q., Xiao W., Ye L., Zhou Y., Sang X., Ling Y., He G., Li Y.	lf1 regulates the lateral organs polarity development in rice.	New Phytol.			2021	YUCCA6,ZPR5,YUCCA1,GL1,YUCCA7,RL9,ZPR1,ZPR3,ZPR2,SHO1,MP,ZPR4,NAL3,NAL2,SHL4,HOX2,HOX1,ARF3,LF1	OsYUCCA6, OsYUC6, YUC6,OsZPR5,OsYUCCA1, OsYUC1, YUC1,gl1, NUDA/GL-1, NUDA/GL1, NUDA, GL-1, OsWOX3B, OsWOX2, OsWOX3, Os WOX3, WOX3B, WOX2, WOX3, LSY1, OsLSY1, DEP, OsDEP,OsYUCCA7, OsYUC7, OsYUC5, YUC5, YUC7,rl9, SLL1/RL9, SLL1, OsSLL1, OsADD1, ADD1, KANADI1, AH2, OsAH2, CL1, OsCL1,OsZPR1,OsZPR3,OsZPR2,sho1, DCL4, OsDCL4, Os DCL4, Dcl4 ,OsMP, OsARF5, OsARF11, DLN125, OsDLN125, OsMP/OsARF11,OsZPR4,nal3(nal2), nal2, nal3, cul3, OsWOX3A, WOX3A, WOX3, OsWOX3, OsNS, OsNS1/OsNS2, OsPRS,nal2, nal3, cul2, OsWOX3A, WOX3A, Os NS, NS, OsNS, OsWOX3, OsNS1/OsNS2, OsPRS,shl4, sh4, OsAGO7, SHO2, AGO7, SHL4/SHO2,Oshox2, OsHox2, OsHDZ19, OsHDZIP19, HDZ19, HDZIP19,Oshox1, OsHox1, OsHDZ38, OsHDZIP38, HDZ38, HDZIP38,OsARF3, ETT3, Os ETT3, OsETT3, DLN20, OsDLN20, ARF4, OsARF3lb, ARF3lb,HOX10, Oshox10, OsHox10, OsHB1, HB1, OSHB1, LF1/OsHB1, OsLF1, OsHDZ9, OsHDZIP9, HDZ9, HDZIP9
49345	33511344	Cheng X., Pan M., E Z., Zhou Y., Niu B., Chen C.	The maternally expressed polycomb group gene <i>OsEMF2a</i> is essential for endosperm cellularization and imprinting in rice.	Plant Commun	2(1)	100092	2021	EMF2A,EMF2B	OsEMF2a, OsEMF2, EMF2, ZOS4-02, OsZOS4-02,OsEMF2b, EMF2b, GW9, OsGW9, GW9/OsEMF2b 
49346	33446554	Pandey B.K., Huang G., Bhosale R., Hartman S., Sturrock C.J., Jose L., Martin O.C., Karady M., Voesenek LACJ., Ljung K., Lynch J.P., Brown K.M., Whalley W.R., Mooney S.J., Zhang D., Bennett M.J.	Plant roots sense soil compaction through restricted ethylene diffusion.	Science	371(6526)	276-280	2021	EIN2,EIL1	OsEIN2, MHZ7/OsEIN2, OsEIN2/MHZ7, MHZ7 ,OsEIL1, EIN3, OsEIN3, MHZ6, OsEIL1a, EIL1a, OsEIL1b, EIL1b
49347	33793857	Reis R.S., Deforges J., Schmidt R.R., Schippers J.H.M., Poirier Y.	An antisense noncoding RNA enhances translation via localised structural rearrangements of its cognate mRNA.	Plant Cell			2021	PHO1;2 CIS-NAT,PHO1;2	OsPHO1;2 cis-NAT, cis-NAT PHO1;2, cisNATpho1.2, cis-NATpho1.2,OsPHO1;2, PHO1.2, OsPHO1.2, PHO1
49348	33414189	Torabi S.F., Vaidya A.T., Tycowski K.T., DeGregorio S.J., Wang J., Shu M.D., Steitz T.A., Steitz J.A.	RNA stabilization by a poly(A) tail 3'-end binding pocket and other modes of poly(A)-RNA interaction.	Science	371(6529)		2021	TWIFB1	OsTWIFB1
49349	33580702	Choi J.Y., Abdulkina L.R., Yin J., Chastukhina I.B., Lovell J.T., Agabekian I.A., Young P.G., Razzaque S., Shippen D.E., Juenger T.E., Shakirov E.V., Purugganan M.D.	Natural variation in plant telomere length is associated with flowering time.	Plant Cell			2021		
49350	33775361	Suzuki G., Lucob-Agustin N., Kashihara K., Fujii Y., Inukai Y., Gomi K.	Rice MEDIATOR25, OsMED25, is an essential subunit for jasmonate-mediated root development and OsMYC2-mediated leaf senescence.	Plant Sci.	306	110853	2021		
49351	33624777	Watanabe M., Shigihara M., Hirota Y., Takato S., Sato A., Kakei Y., Kikuchi R., Ishii T., Soeno K., Nakamura A., Shimada Y.	Effect of an auxin biosynthesis inhibitor, p-phenoxyphenyl boronic acid, on auxin biosynthesis and development in rice.	Biosci. Biotechnol. Biochem.	85(3)	510-519	2021		
49352	33368800	Chang Z., Xu R., Xun Q., Liu J., Zhong T., Ding Y., Ding C.	OsmiR164-targeted OsNAM, a boundary gene, plays important roles in rice leaf and panicle development.	Plant J.	106(1)	41-55	2021	NAM,CUC3	OsNAM, OMTN5, ONAC092, ONAC92, NAC92, CUC2, OsNAM/CUC2, DLN165, OsDLN165, OsCUC1, CUC1, OsNAM/ OMTN5, OsNAM1, NAM1,OsCUC3, ONAC107, NAC107, DLN214, OsDLN214
49353	33639599	Ding J., Liu L., Wang C., Shi L., Xu F., Cai H.	High level of zinc triggers phosphorus starvation by inhibiting root-to-shoot translocation and preferential distribution of phosphorus in rice plants.	Environ. Pollut.	277	116778	2021		
49354	33630095	Chen M., Ni L., Chen J., Sun M., Qin C., Zhang G., Zhang A., Jiang M.	Rice calcium/calmodulin-dependent protein kinase directly phosphorylates a mitogen-activated protein kinase kinase to regulate abscisic acid responses.	Plant Cell			2021	ABA2,MKK1,DSG1,DMI3,MKK6	OsABA2, OsSDR, SDR,OsMKK1, OsMEK2, MEK2, OsMAPKK1, MAPKK1, OsMAP2K2, MAP2K2,OsMAPK6, MAPK6, OsMPK6, OsSIPK, SIPK, OsMAPK1, MAPK1, MPK1, OsMPK1, MPK6, OsDSG1,OsDMI3, OsCCaMK1, OsCCaMK, OsCCAMK, CCAMK,OsMKK6, OsMEK1, MEK1, OsMAPKK6, MAPKK6, OsMPKK6, MPKK6, OsMAP1, MAP1
49355	33560572	Chen H., Fang R., Deng R., Li J.	The OsmiRNA166b-OsHox32 pair regulates mechanical strength of rice plants by modulating cell wall biosynthesis.	Plant Biotechnol. J.			2021	HB4,CESA7,GH2,4CL3,MIR166B,CSLF6,CESA6,OSH15	OSHB4, OsHox32, HOX32, OsHB4, Oshox32, PHB3, OsHDZ13, OsHDZIP13, HDZ13, HDZIP13,OsCesA7, OsCESA7, OS_CESA07, OsCesA 7, CesA7,gh2, CAD2, CAD, OsCAD2, OsGH2 ,Os4CL3, Os4CL2, Os4CL, 4CL2, 4CL,miR166b, osa-miR166bosa-miR166b-3p osa-miR166b-5p, OsmiR166b,OsCslF6, OsCSLF6, OsCLD3, CLD3,OsCesA6, OsCESA6, OS_CESA06,OSH15, OsH15, OSKN3, Oskn3, HOS3, D6, d6, OSH15/Oskn3, HB253, H15, OsKNOX3, KNOX3
49356	33600077	Wang A., Shu X., Jing X., Jiao C., Chen L., Zhang J., Ma L., Jiang Y., Yamamoto N., Li S., Deng Q., Wang S., Zhu J., Liang Y., Zou T., Liu H., Wang L., Huang Y., Li P., Zheng A.	Identification of rice (Oryza sativa L.) genes involved in sheath blight resistance via a genome-wide association study.	Plant Biotechnol. J.			2021	CATA,RPR1,SHMT1,DHAR1,AOC,GRX20,AOS2,RLCK5,APX1,ACS2	CATA1, Cat A1*, OSCAT-A, Cat2, CatA1, CAT-A, OsCatA, OsCAT, CAT, catA, OSCATA, OsCATc, OsCATA, OsCAT1A, CAT1, OsCAT1, OsCATC, OsCAT2,RPR1*, Rpr1-1, Rpr1, RPM1, OsRPM1, OsRSR1, RSR1,OsSHM1, SHM1, OsSHMT1, CDM1, OsCDM1, OsSHTM3, SHTM3, OsSHMT, SHMT,OsDHAR1, DHAR, cytDHAR, OscytDHAR, OsDHAR,OsAOC, AOC1, OsAOC1, HB, CPM2, OsAOC4, AOC4,OsGRX20,OsAOS2, CYP74A2, OsAOS, OsAOS1,OsRLCK5,OsAPX1, APXa, OsAPXa, OsAPx01, OsAPx1, OSAPX1, APx1, cAPX, APX2, cAPXa, OscAPXa,OsACS2, Os-ACS2
49357	33559721	Xiao Y., Zhang L., Zhang H., Feng H., Li Z., Chen H.	Interaction between endogenous H2O2 and OsVPE3 in the GA-induced PCD of rice aleurone layers.	Plant Cell Rep.	40(4)	691-705	2021	RBOHA,REP2,RBOHG,RBOHI,RBOHC,RBOHH	rbohA, OsrbohA, Os rbohA, OsRbohA, OsNox2, Nox2, OsRboh2, Rboh2,OsVPE3, VPE3, OsREP-2, REP-2alpha, REP-2beta, OsaLeg2, aLeg2,rbohG, OsrbohG, Os rbohG, OsRbohG, OsNox7, Nox7, OsrbohB, OsRBOHB, RBOHB, OsRboh7, Rboh7,OsrbohI, Os rbohI, rbohI, OsRbohI, OsRbohF, OsNOX8, NOX8, OsRboh8, Rboh8,rbohC, OsrbohC, Os rbohC, OsRbohC, OsNox5, Nox5, OsrbohD, OsRboh5, RBOHA, OsRboh5, Rboh5,rbohH, OsrbohH, Os rbohH, OsNox9, Nox9, OsRboh9, Rboh9, Os-RbohH, RbohH 
49358	33669850	Hawku M.D., Goher F., Islam M.A., Guo J., He F., Bai X., Yuan P., Kang Z., Guo J.	<i>TaAP2-15</i>, An AP2/ERF Transcription Factor, Is Positively Involved in Wheat Resistance to <i>Puccinia striiformis</i> f. sp. <i>tritici</i>.	Int J Mol Sci	22(4)		2021		
49359	33548226	Maidment J.H.R., Franceschetti M., Maqbool A., Saitoh H., Jantasuriyarat C., Kamoun S., Terauchi R., Banfield M.J.	Multiple variants of the fungal effector AVR-Pik bind the HMA domain of the rice protein OsHIPP19, providing a foundation to engineer plant defence.	J. Biol. Chem.		100371	2021	HIPP19	OsHIPP19, OsaHIP19, HIP19
49360	33684805	Maheshwari C., Coe R.A., Karki S., Covshoff S., Tapia R., Tyagi A., Hibberd J.M., Furbank R.T., Quick W.P., Lin H.C.	Targeted knockdown of ribulose-1, 5-bisphosphate carboxylase-oxygenase in rice mesophyll cells.	J. Plant Physiol.	260	153395	2021	RBCS4,RBCS	RbcS, RbcS4, OsRBCS4, OsRbcS4,rbcS, OsRbcS, RBCS-C, RbcS2, OsRBCS2, RbcS1, OsRbcS2, OsrbcS1
49361	33669006	Park J.R., Resolus D., Kim K.M.	<i>OsBRKq1</i>, Related grain size Mapping, and Identification of Grain Shape Based on QTL Mapping in Rice.	Int J Mol Sci	22(5)		2021	D61	d61*, dwf42, d61, OsBRI1, OSBRI1, BRI1, Os BRI1, Osbri1, OsBRKq1, BRKq1
49362	33602126	Qu M., Zhang Z., Liang T., Niu P., Wu M., Chi W., Chen Z.Q., Chen Z.J., Zhang S., Chen S.	Overexpression of a methyl-CpG-binding protein gene OsMBD707 leads to larger tiller angles and reduced photoperiod sensitivity in rice.	BMC Plant Biol.	21(1)	100	2021	MBD713,MBD701,MBD710,MBD718,MBD705,MBD706,MBD707,MBD717,MBD714,MBD704,MBD715,MBD708,MBD716,MBD712,MBD709,MBD703	OsMBD713,OsMBD701,OsDLN48, DLN48, OsMBD710, OsDLN47, DLN47, OsBrdST2, BrdST2,OsMBD718,OsMBD705,OsMBD706,OsMeCP, MeCP, OsMBD707,OsMBD717,OsMBD714,OsMBD704,OsMBD715,OsMBD708,OsMBD716,OsMBD712,OsMBD709,OsMBD703
49363	33562367	Chen J., Wang L., Yuan M.	Update on the Roles of Rice MAPK Cascades.	Int J Mol Sci	22(4)		2021	MSRMK2,MPK6,BWMK1,MKK10-2,MKK1,MPK16,_,SMG1,SMG2,MAPKKK11,MAPK4,DSM1,ILA1,MAP3,WJUMK1,_,DSG1,MAPKKK18,ACDR1,MAPKKK63,MAPKKKEPSILON,MKK3,MKK6,MPK7	OsMSRMK2, OsMAPK5, OsMAP1, OsMPK3, OsBIMK1, OsMAPK2, MPK5, BIMK1, MAPK2, MAPK5, MPK3, OsMPK5, OsMAPK3, OsMAPK5b, MAPK3,OsMPK6, OsDR6, DR6, OsMPK4, MPK4, OsMAPK4, MAPK4,OsBWMK1, MPK12, MAPK1, OsMAPK1, OsMPK12, OsMPK17-1, MPK17-1, OsBWMK1L, OsBWMK1M, OsBWMK1S, OsMAPK17-1, MAPK17-1, MAPK12, OsMAPK12,OsMKK10-2, MKK10-2D, OsMPKK10-2, MPKK10-2, OsMKK10.2, MKK10.2, OsMPKK10-2D, MPKK10-2D, MPKK10.2, OsMAPKK10-2, MAPKK10-2, OsMEK3. MEK3,OsMKK1, OsMEK2, MEK2, OsMAPKK1, MAPKK1, OsMAP2K2, MAP2K2,OsMPK16, OsMPK15, MPK15, OsMAPK16, MAPK16,OsMPK13, OsMAPK2, OsBIMK2, BIMK2, MPK13, MAPK2, OsMAPK17-2, MAPK17-2,OsMKK4, MKK4, OsMKK4/SMG1, OsMAPKK4, MAPKK4, OsMEK4, MEK4, OsSMG1, SMG1/OsMEK6, OsMEK6, MEK6, OsSTS, STS,YDA1, OsMKKK10, MKKK10, SMG2/OsMKKK10, OsSMG2, OsMAPKKK10, MAPKKK10,OsMAPKKK11,OsMAPK4, OsMAP2, OsMSRMK3, OsMPK4, OsMPK7, MAP2, MSRMK3, MPK4, MPK7, MAPK7, OsMAPK7,OsDSM1, OsMAPKKK6, MAPKKK6,OsILA1, OsACTPK4, ACTPK4, OsMAPKKK43, MAPKKK43,OsMAPK33, OsMPK14, OsMAPK2, OsMAP3, OsMAPK14, OsMPK3, MAPK33, MPK14, MAPK2, MAPK14, MPK3, OsMAPK3, MAPK3,OsMPK20-4, MPK20-4, OsWJUMK, OsWJUMK1, WJUMK, MAPK8, OsMPK8, MPK8, OsMAPK20-4, MAPK20-4, OsMPKG1, MPKG1,OsNPK1-PK, NPK1-PK, OsMKKK62, MKKK62, OsMAPKKK62, MAPKKK62, MEK7, OsMEK7,OsMAPK6, MAPK6, OsMPK6, OsSIPK, SIPK, OsMAPK1, MAPK1, MPK1, OsMPK1, MPK6, OsDSG1,OsMAPKKK18,OsEDR1, OsACDR1, EDR1, OsMAPKKK1, MAPKKK1, SPL3, OsSPL3,OsMAPKKK63,OsMAPKKKepsilon, MAPKKKepsilon, OsMAPKKK24, MAPKKK24,OsMKK3, OsMAPKK3, MAPKK3, OsMEK8a, MEK8a, OsMEK3, MEK3,OsMKK6, OsMEK1, MEK1, OsMAPKK6, MAPKK6, OsMPKK6, MPKK6, OsMAP1, MAP1,OsMPK7, OsMAPK44, MAPK44, OsMAPK20-5, MAPK20-5
49364	33567155	Hu B., Zhou Y., Zhou Z., Sun B., Zhou F., Yin C., Ma W., Chen H., Lin Y.	Repressed OsMESL expression triggers reactive oxygen species-mediated broad-spectrum disease resistance in rice.	Plant Biotechnol. J.			2021	CATB,WRKY76,LOX1,AOX1B,APX3,LOX8,MT2B,DR8,JAR1,WRKY24,SODB,RSOSPR10,WRKY45,OG1,PR1A,APX8,OPR1,_,SODA1,_,PR1B,JMT1,WRKY77,LOX2,MADS26,LOX1,PIZ,APX1,JIOSPR10,AOX1A,CATA,AOC,SPH,TRX29,_,MESL	CatB, CAT-B, OsCatB, OsCATB, OsCAT1B, CAT1B, CAT2, OsCAT2,OsWRKY76, OsWRKY76.1, OsWRKY76.2, OsWRKY76.3,OsLOX1, OsLOX5, OsLOX2, LOX2,AOX1b, OsAOX1b,OsAPx3, OsAPx03, OSAPX3, APx3, mAPX,OsLOX8, OsLOX9, LOX9, OsLOX2;3, LOX2;3, OsLOX2, OsLOX1, CM-LOX8,OsMT2b, MT2b, OsMT-I-2c, MT-I-2c, MT2C, MT2BL, OsMT2C, OsMT2BL, MTE, OsMT2b1, OsMT2b2, MT2b1, MT2b2, MTb, met1, OsMTe, OsMT-I-2c, OsB22EL8, MTe, MT-I-2c, B22EL8,OsDR8, OsXNP, FOXRED1,OsJAR1, OsGH3.5, GH3.5, OsGH3-5, GH3-5,OsWRKY24,SodB, Fe-SOD, Fe- SOD, OsFe-SOD, Fe+-SOD, OsFe+-SOD, OsFe-SODa, OsFe-SODb, OsFeSODb, FeSODb, OsFSD1.2, FSD1.2, FeSOD2, OsFSD2, FSD2, OsFSD1, FSD1, ALM1, OsALM1,RSOsPR10, RsOsPR10a, OsPR10a, OsPR10alpha, OsPR10, PR10, OsBETV1, BETV1,OsWRKY45, OsWRKY45-1, OsWRKY45-2, WRKY45-1, WRKY45-2,OsOPR7, OPR7, OsOPR13, OsOPR3, OsOPR5, OsOPR9, OsOPR08-1,  OPR13, OPR3, OPR5, OPR9, OPR08-1, OsOPR8, OPR8,OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1, OsPR1b, PR1alpha, OsPR1alpha,OsAPx8, OsAPx08, OSAPX8, APx8, OsAPX8,OsOPR1, OsOPR2, OsOPR11, OsOPR06-6, OPDAR1, OsOPR, OPDAR,BAS1, OsTPX, Os2-Cys PrxA, 2-Cys PrxA, Os2-CysPrxA, 2-CysPrxA, 2CYSPRXA, OsPRX2, PRX2,SodA1, OsSODA1, Mn-SOD, Mn- SOD, OsMSD, MnSOD, OsMnSOD, MnSOD1, OsMnSOD1,Lox2:Os:1, OsLOX9, LOX9, OsLOX8, LOX8, OsLOX2, LOX2, OsRLL, OsHI-LOX, HI-LOX, RLL2 LOX, RLL2, Lox2osPil, OsLOX2;1, LOX2;1, OsLOX1, OsLOX7, LOX7,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1, OsPR1a, PR1a,JMT-1, OsJMT-1, OsJMT1,OsWRKY77, WRKY-77,OsLOX2, OsLOX6, LOX6,OsMADS26, FDRMADS3, RMADS220,OsLOX1, OsLOX5,Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2,OsAPX1, APXa, OsAPXa, OsAPx01, OsAPx1, OSAPX1, APx1, cAPX, APX2, cAPXa, OscAPXa,JIOsPR10, OsPR10, PR10, OsJiPR10, JiPR10, OsPR10c, PR10c,Ao1-1, AOX1a, OsAOX1a, AOX 1a,CATA1, Cat A1*, OSCAT-A, Cat2, CatA1, CAT-A, OsCatA, OsCAT, CAT, catA, OSCATA, OsCATc, OsCATA, OsCAT1A, CAT1, OsCAT1, OsCATC, OsCAT2,OsAOC, AOC1, OsAOC1, HB, CPM2, OsAOC4, AOC4,OsLOX6, LOX6, LOX5, OsLOX5,OsTRX m5, Ostrxm5, OsTRXM5, TRXM5, OsTrxm, OsTrx29, Trx29,prx98, Osprx98, POD1, OsPOD1,OsMESL
49365	33693937	Huang L., Hua K., Xu R., Zeng D., Wang R., Dong G., Zhang G., Lu X., Fang N., Wang D., Duan P., Zhang B., Liu Z., Li N., Luo Y., Qian Q., Yao S., Li Y.	The LARGE2-APO1/APO2 regulatory module controls panicle size and grain number in rice.	Plant Cell			2021	OSH15,UPL4,OSH43,OSH1,LOG1,UPL5,UPL1,OSH3,UPL3,UPL6,GN1A,UPL7,LARGE2,RFL,WFP,APO1	OSH15, OsH15, OSKN3, Oskn3, HOS3, D6, d6, OSH15/Oskn3, HB253, H15, OsKNOX3, KNOX3,OsHECT5, HECT5, OsUPL4,OsH43, H43,OSKN1, Oskn1, OsKN1, OSH1/Oskn1, HB75,OsLOG1, LOG, Log, log, OsLOG,OsHECT7, HECT7, OsUPL5,OsHECT6, HECT6, OsUPL1,OsH3, H3, HOS13,OsHECT1, HECT1, OsUPL3,OsHECT4, HECT4, OsUPL6,Gn1a, OsCKX2, CKX2, ckx2, Gn1a/OsCKX2, Os CKX2, CKX2/Gn1a,OsUPL7, HECT2, OsHECT2,OsLARGE2, OsUPL2, UPL2,  OsHECT8, HECT8,RFL, OSL, FL, APO2, APO2/RFL, SSC, SSC/RFL/APO2, OsRFL, OsFL, OsAPO2, OsSSC,OsSPL14, SPL14, IPA1, WFP/IPA1, OsSPL14/WFP/IPA1, OsIPA1,  IPA1/OsSPL14,apo1(t), apo1, SCM2, SCM2/APO1, OsFbox321, Os_F0393, Pbl6/APO1, Pbl6, OsPbl6,  OsFBX202, FBX202
49366	33570751	Liu J., Liao W., Nie B., Zhang J., Xu W.	OsUEV1B, an Ubc enzyme variant protein, is required for phosphate homeostasis in rice.	Plant J.			2021	PT9,PT3,PT6,PT4,PT8,VDAC1,MIR399J,CROC1,SQD2.2,PT1,PT10,UBC13,MIR399A	OsPT9, PHT1-9, OsPht1;9,OsPT3, PHT1-3, OsPht1;3, OjPT1, PHT1;3,OsPT6, PHT1-6, OsPht1;6, OsLPT6:1, OsLPT1, OsPT6:1, Pht1;6, LPT6:1, LPT1, PT6:1,OsPT4, PHT1-4, OsPht1;4, PHT1-2, PHT1;4, OsPHT1;4,OsPT8, PHT1-8, OsPht1;8, Pht1;8, PHT1;8, OsPHT1;8,OSVDAC1, osvdac1, OsVDAC1,OsmiR399j, osa-miR399j, osa-MIR399j, Os-miR399j, miR399j,OsCROC-1, CROC-1, OsCROC1, OsUEV1B, UEV1B,OsSQD2, SQD2, OsSQD2.2,OsPT1, PHT1-1, OsPht1;1, Pht1;1, OsPHT1;1, PHT1;1,OsPT10, PHT1-10, OsPht1;10,OsUbc13, Ubc13, OsUBC47, UBC47,OsmiR399a, osa-miR399a, osa-MIR399a, Os-miR399a, miR399a
49367	33624820	Zhu J., Ren Y., Zhang Y., Yang J., Duan E., Wang Y., Liu F., Wu M., Pan T., Wang Y., Hu T., Hao Y., Teng X., Zhu X., Lei J., Jing R., Yu Y., Sun Y., Bao X., Bao Y., Wang Y., Wan J.	Subunit E isoform 1 of vacuolar H+-ATPase OsVHA enables post-Golgi trafficking of rice seed storage proteins.	Plant Physiol.			2021	VHA-H1,GLUP4,VHA-C,PLS1,GPA3,VHA-B2,VHA-c,VHA-D,VHA-F,VHA-a1,VHA-a2,VHA-H2,VHA-G,VHA-B,VHA-D,VHA-A2,GPA8,VHA-E3,VHA-E2	OsVHA-H1,glup4(esp8), esp8, glup4, OsRab5B2, Rab5a, OsRab5a, GPA1/Rab5a, GPA, GLUP4/Rab5, GLUP4/Rab5a, GPA1, OsGPA1,OsVHA-C,OsVHA-A, VHAA1, VHA-A1, OsVHA-A1, OsPLS1, OsPSL1/VHA-A1,OsGPA3,OsVHA-B2,OsVHA-c,OsVHA-D,OsVHA-F,OsVHA-a1,OsVHA-a2,OsVHA-H2,OsVHA-G,OsVHA-B, VHA-B1, OsVHA-B1,OsVHA-d, VHA-d,OsVHA-A2, VHAA2,v-ATP-E, Osv-ATP-E, OsVHA-E1, VHA-E1, OsGPA8, OsRHA4, RHA4,OsVHA-E3,OsVHA-E2, OsRHA2, RHA2
49368	33639555	Yan G., Fan X., Zheng W., Gao Z., Yin C., Li T., Liang Y.	Silicon alleviates salt stress-induced potassium deficiency by promoting potassium uptake and translocation in rice (Oryza sativa L.).	J. Plant Physiol.	258-259	153379			
49369	33643334	Liu Q., Xu J., Zhu Y., Mo Y., Yao X.F., Wang R., Ku W., Huang Z., Xia S., Tong J., Huang C., Su Y., Lin W., Peng K., Liu C.M., Xiao L.	The Copy Number Variation of <i>OsMTD1</i> Regulates Rice Plant Architecture.	Front Plant Sci	11	620282	2020	AM2,MIR156F,MTD1	OsAM2, OsPI8-1a, PI8-1a,miR156f, osmiR156f, OsmiR156f, osa-miR156f, osa-MIR156fosa-miR156f-3p osa-miR156f-5p,Osmtd1
49370	33647795	Shi X., Tian Q., Deng P., Zhang W., Jing W.	The rice aldehyde oxidase OsAO3 gene regulates plant growth, grain yield, and drought tolerance by participating in ABA biosynthesis.	Biochem. Biophys. Res. Commun.	548	189-195	2021	AO3	AO, OsAO, AAO, OsAAO, OsAO3, OsAAO1, AAO1
49371	33667970	Miftahudin M., Roslim D.I., Fendiyanto M.H., Satrio R.D., Zulkifli A., Umaiyah E.I., Chikmawati T., Sulistyaningsih Y.C., Suharsono S., Hartana A., Nguyen H.T., Gustafson J.P.	OsGERLP: A novel aluminum tolerance rice gene isolated from a local cultivar in Indonesia.	Plant Physiol. Biochem.	162	86-99	2021	GERLP	OsGERLP
49372	33591317	Uzair M., Long H., Zafar S.A., Patil S.B., Chun Y., Li L., Fang J., Zhao J., Peng L., Yuan S., Li X.	Narrow Leaf21, Encoding Ribosomal Protein RPS3A, Controls Leaf Development in Rice.	Plant Physiol.			2021	LC1,RPS3AB,RPS3AC,IAA20,NAL21,ARF16,MP,NAL2,NAL3	OsGH3-1, GH3-1, OsGH3.1,GH3.1, OsLC1,RPS3aB, OsRPS3aB,RPS3a, Os RPS3a, RPS3aC, OsRPS3aC,OsIAA20,cyc07, T151, OsNAL21, OsRPS3A, RPS3A, RPS3aA, OsRPS3aA,OsARF16,OsMP, OsARF5, OsARF11, DLN125, OsDLN125, OsMP/OsARF11,nal2, nal3, cul2, OsWOX3A, WOX3A, Os NS, NS, OsNS, OsWOX3, OsNS1/OsNS2, OsPRS,nal3(nal2), nal2, nal3, cul3, OsWOX3A, WOX3A, WOX3, OsWOX3, OsNS, OsNS1/OsNS2, OsPRS
49373	33610657	Verma P.K., Verma S., Tripathi R.D., Pandey N., Chakrabarty D.	CC-type glutaredoxin, OsGrx_C7 plays a crucial role in enhancing protection against salt stress in rice.	J. Biotechnol.	329	192-203	2021		
49374	33543762	Ohara T., Takeuchi H., Sato J., Nakamura A., Ichikawa H., Yokoyama R., Nishitani K., Minami E., Satoh S., Iwai H.	Structural Alternation of Rice Pectin Affects Cell Wall Mechanical Strength and Pathogenicity for the Rice Blast Fungus under Weak Light Conditions.	Plant Cell Physiol.			2021	PGL3,PGL29	OsPGL3, OsPG2, PG2,OsPGL29, OsPG1, PG1
49375	33544455	Pasion E.A., Badoni S., Misra G., Anacleto R., Parween S., Kohli A., Sreenivasulu N.	OsTPR boosts the superior grains through increase in upper secondary rachis branches without incurring a grain quality penalty.	Plant Biotechnol. J.			2021	GS2,D11,MFT1,MYB4P,_,SPPL1,SBE3,MOC1,FLO16,FON1,GAD1,RFL,TPR,WFP,FUG1,SPL4,_,FLO11,MOC2,ELS1	OsGRF4, GRF4, GS2/OsGRF4, PT2, GLW2, GS2/GL2, LGS1, OsLGS1,d11(d8), dwf10, d8, D11/CYP724B1, d11, CYP724B1, GNS4, OsD11, PMM1, OsPMM1, PMM1/D11, NBG4, OsCPB1, CPB1, CPB1/D11,OsMFT1,OsMYB4P, Os2R_MYB90, 2R_MYB90,,OsSPPL1,SBEIII*, SBEIII, Sbe3, RBE3, QEIIa, QEIIA, BEIIb, BEIIB, SBEIIb, OsBEIIb, sbe3, SBE III, OsSBEIIb, SBEIIb,moc1, OsMOC1, OsGRAS-33, OsGRAS33, GRAS-33, GRAS33, GNP6, OsGNP6,CMDH, OscMDH, cMDH, OsMDH, MDH, OsFLO16, OsMDH10.1, MDH10.1, OsLdh11, Ldh11,OsFON1, fon1, OsRLCK219, RLCK219,OsGAD1, GDC,RFL, OSL, FL, APO2, APO2/RFL, SSC, SSC/RFL/APO2, OsRFL, OsFL, OsAPO2, OsSSC,OsTPR,OsSPL14, SPL14, IPA1, WFP/IPA1, OsSPL14/WFP/IPA1, OsIPA1,  IPA1/OsSPL14,OsFUG1,OsSPL4,,OsHsp70CP2, HSP70CP2, OsFLO11, OsFLO11-2, FLO11-2, cpHSP70-2, OsHsp70cp-2, Hsp70cp-2,FR, OsFR, FBP1, OsFBP1, OsMOC2, OscFBP1, cFBP1, MOC2/FBP1,OsELS1
49376	33570603	Yuan Z., Fan K., Wang Y., Tian L., Zhang C., Sun W., He H., Yu S.	OsGRETCHENHAGEN3-2 modulates rice seed storability via accumulation of abscisic acid and protective substances.	Plant Physiol.			2021	VP1,NCED2,ABA8OX1,LEA22,LEA1,ABI1,GH3-2	Vp1* (OSVP1), OsVP1, OsVp1, Vp1, ABI3, OsABI3, OsLFL4, OsVp-1, OSVP1,OSNCED2, OsNCED2, OsNCED5, NCED5,OsABA8OX1, CYP707A5, OsCYP707A5, ABA8ox1, OsABA8ox1, OsABA8'OH1, ABA8'OH1 ,OsLEA22, RAB25, OsRab16, Rab16, OsABA45, ABA45,OsLEA1, OsLEA2, LEA2,OsPP2C51, PP2C51, OsPP79, PP79, OsABI1,OsGH3-2, OsGH3.2, GH3.2
49377	33535383	Wytynck P., Lambin J., Chen S., Demirel Asci S., Verbeke I., De Zaeytijd J., Subramanyam K., Van Damme EJM.	Effect of RIP Overexpression on Abiotic Stress Tolerance and Development of Rice.	Int J Mol Sci	22(3)		2021	RIP1.1,RIP11.2	OsRIP1, RIP1, OsjRIP1.1,OsjRIP11.2, nuRIP, OsnuRIP
49378	33547931	Jung J.W., Shin J.H., Lee W.K., Begum H., Min C.H., Jang M.H., Oh H.B., Yang M.S., Kim S.R.	Inactivation of the beta (1, 2)-xylosyltransferase and the alpha (1, 3)-fucosyltransferase gene in rice (Oryza sativa) by multiplex CRISPR/Cas9 strategy.	Plant Cell Rep.			2021	FUCTA,RCN11	OsFUT11, FUT11, FucTA, OsFucTA, OsFucT, FucT, "alpha1,3-FucT",Xyl, OsXylT, XylT, RCN11/OsXylT, "beta1,2-XylT"
49379	33130853	Wang G., Li X., Li Y., Ye N., Li H., Zhang J.	Comprehensive epigenome and transcriptome analysis of carbon reserve remobilization in indica and japonica rice stems under moderate soil drying.	J. Exp. Bot.	72(4)	1384-1398	2021	MYBS1,RSUS4,AMY2A,PBGLU,RSUS7,_,BGL1,BGLU18,BGLU36,SWEET7C,RSUS6,_,ABI5,BAMY1,MYB30	OsMYBS1, Os-MYBS1, Mybs1,SUS4, SS4, OsScS4, RSs4, RSus4, OsSUS4,Amy2A*(RAmy2A), AMY1.5, AMYC2, RAmy2A, Amy4, Amy2A,PBGlu, OsPBGlu,SUS7, SS7, OsScS7, RSs7, RSus7, OsSUS7,OSINV2, OsINV2, OsVIN1, VIN1,OsaBGL1, OsBGL1,Os4bglu18, Os4Bglu18, Os4BGlu18,Os11bglu36, Os11Bglu36, SFR2, sfr2,OsSWEET7c, SWEET7c,SUS6, SS6, OsScS6, RSs6, RSus6, OsSUS6,,OsABI5, OsbZIP10, OsABF1, OREB1, OsABI5-1, OsABI5-2, OsOREB1, OREB1 ,OsSTA246, STA246, OsBamy1, Bamy1, BAM2, OsBAM2, OsBmy9, Bmy9, BMY5, OsBMY5,OsMYB30, OsMYB5P, MYB5P, OsMYB13a, MYB13a, Os2R_MYB26, 2R_MYB26, OsMYB30C, MYB30C
49380	33606144	Hou J., Ren R., Xiao H., Chen Z., Yu J., Zhang H., Shi Q., Hou H., He S., Li L.	Characteristic and evolution of HAT and HDAC genes in Gramineae genomes and their expression analysis under diverse stress in Oryza sativa.	Planta	253(3)	72	2021	HDAC6,HAC703,HDT701,HDA707,HDA713,SRT701,SIR2B,HAG702,HDA716,HDA701,HDA705,HAM701,HDAC1,HAG703,HDA712,HDA709,DSL1,HAC704,HDAC3,HDAC10,HDA704,HDAC2	OsHDAC6, OsHDA706, HDA706,OsHAC703, OsKIX_2, OsHAC1,OsHDT1, HDT701, OsHDT701, ZOS5-12, OsZOS5-12, HDT1,OsHDA707,OsHDA713,osSRT701, OsSIRT701, OsSRT1, SRT1, OS-SIR2,Sir2, OsSIR2b, OsSir2b, OsSRT2, SRT2, DLN255, OsDLN255, OsSRT702, SRT702,OsHAG702, GCN5, OsGCN5, OsBrd10, Brd10,OsHDA716,OsSTA18, OsHDA701,OsHDA705,OsHAM701, OsMOF, MOF,OsHDAC1, HDA702, OsHDA702, HDA1, OsHDA1, HDT702, OsHDT702,OsHAG703, OsELP3, ELP3,OsHDA712,OsHDA709,OsDSL1, OsHDA711, HDA711, OsHDA9, HDA9,OsHAC704, OsKIX_4, OsHAC12 ,OsHDAC3, HDA703, OsHDA703,OsHDAC10, HDA714, OsHDA714, ASDAC, OsASDAC,OsHDA704,OsHDAC2, HDA710, OsHDA710 
49381	33544956	Mao B., Zheng W., Huang Z., Peng Y., Shao Y., Liu C., Tang L., Hu Y., Li Y., Hu L., Zhang D., Yuan Z., Luo W., Yuan L., Liu Y., Zhao B.	Rice MutLgamma, the MLH1-MLH3 heterodimer, participates in the formation of type I crossovers and regulation of embryo sac fertility.	Plant Biotechnol. J.			2021	MLH1,FSV1	OsMLH1,OsFSV1, OsMLH3, MLH3
49382	33581621	Wan Abdullah WMAN., Tan N.P., Low L.Y., Loh J.Y., Wee C.Y., Md Taib AZ., Ong-Abdullah J., Lai K.S.	Calcium lignosulfonate improves proliferation of recalcitrant indica rice callus via modulation of auxin biosynthesis and enhancement of nutrient absorption.	Plant Physiol. Biochem.	161	131-142	2021		
49383	33543390	Li L., He Y., Zhang Z., Shi Y., Zhang X., Xu X., Wu J.L., Tang S.	OsNAC109 regulates senescence, growth and development by altering the expression of senescence- and phytohormone-associated genes in rice.	Plant Mol. Biol.	105(6)	637-654	2021	YL3	ONAC109, NAC109, OsYL3
49384	33130892	Santosh Kumar VV., Yadav S.K., Verma R.K., Shrivastava S., Ghimire O., Pushkar S., Rao M.V., Senthil Kumar T., Chinnusamy V.	The abscisic acid receptor OsPYL6 confers drought tolerance to indica rice through dehydration avoidance and tolerance mechanisms.	J. Exp. Bot.	72(4)	1411-1431	2021	NCED2,NCED2,NCED1,PYL/RCAR4,NCED1,NCED3	OSNCED2, OsNCED2, OsNCED5, NCED5,OsNCED2, OsNced2, OsCCD4b, CCD4b, OsCCD4c, CCD4c,OsNCED1, OsCCD4a, CCD4a,OsPYL/RCAR4, PYL4, OsPYL4, OsPYL6, PYL6,OSNCED1, OsNCED-1, OsNCED3, OsNced3, NCED3, OsNCED9, NCED9,OSNCED3, OsNCED-3, OsNCED3, OsNCED3a, NCED3a, OsNCED4, NCED4, OsNECD2, OsNCED2b, NCED2b 
49385	33671705	Wei Q., Yan Z., Xiong Y., Fang Z.	Altered Expression of <i>OsAAP3</i> Influences Rice lesion mimic and leaf senescence by Regulating Arginine Transport and Nitric Oxide Pathway.	Int J Mol Sci	22(4)		2021	AAP12A	OsAAP12A, OsAAP3, AAP3
49386	33620493	Yang X., Zhao X., Dai Z., Ma F., Miao X., Shi Z.	OsmiR396/Growth Regulating Factor modulate rice grain size.through direct regulation of embryo-specific miR408.	Plant Physiol.			2021	GRF3,MIR396B,MIR396F,GRF11,GRF1,MIR396D,MIR396C,GRF7,MIR396E,GRF9,GRF6,GRF5,GRF10,GRF12,GRF2,MIR408,GRF8	OsGRF3,miR396b, osa-miR396b, osa-MIR396bosa-miR396b-3p osa-miR396b-5p, OsmiR396b,miR396f, osa-miR396f, OsmiR396f,OsGRF11,OsGRF1,miR396d, osa-miR396d, osa-MIR396d, OsmiR396d,miR396c, osa-miR396c, osa-MIR396c, osa-miR396c-3p, osa-miR396c-5p, OsmiR396c,OsGRF7,miR396e, osa-miR396e, osa-MIR396e, OsmiR396e, OsmiR396e,OsGRF9,OsGRF6,OsGRF5,OsGRF10,OsGRF12,OsGRF2,miR408, osa-MIR408osa-miR408 osa-miR408-3p osa-miR408-5p, OsMIR408 ,OsGRF8
49387	33557166	Zhao J., Li W., Sun S., Peng L., Huang Z., He Y., Wang Z.	The Rice Small Auxin-Up RNA Gene <i>OsSAUR33</i> Regulates Seed Vigor via Sugar Pathway during Early Seed Germination.	Int J Mol Sci	22(4)		2021	SAUR33,AMY3D,MYBS1,OSK1	OsSAUR33,Amy3D/E*(RAmy3D/E), alpha Amy3, AmyII-4, AMY1.3, Amy3D, Amy3D/E*, RAmy3D/E, Amy3D_E, Amy8, aAmy3, RAmy3D, OsAmy3D, alphaAmy3, OsRamy3D,OsMYBS1, Os-MYBS1, Mybs1,osk1, SnRK1A, OsSnRK1A, OsSNRK1a, SnRK1A/OSK1, SnRK1a, OsSnRK1.2, SnRK1.2, OsSnRK1alphaA, SnRK1alphaA
49388	33453070	Yu H., Du Q., Campbell M., Yu B., Walia H., Zhang C.	Genome-wide discovery of natural variation in pre-mRNA splicing and prioritising causal alternative splicing to salt stress response in rice.	New Phytol.	230(3)	1273-1287	2021	_,CPN1,RAD23,NUC1	,  OsRING443, RING443,OsCPN1,OsRAD23,OsNUC1, OsNUC1-S, OsNUC1-L
49389	33562320	Bang S.W., Lee H.S., Park S.H., Lee D.K., Seo J.S., Kim Y.S., Park S.C., Kim J.K.	<i>OsCRP1</i>, a Ribonucleoprotein Gene, Regulates Chloroplast mRNA Stability That Confers Drought and cold tolerance.	Int J Mol Sci	22(4)		2021	CRP4,CRP5,CRP2,CRP6,CRP7,CRP8,CRP3,CRP1	OsCRP4, cpRNP4, OsRRM2, RRM2,OsCRP5, cpRNP5,OsCRP2, cpRNP2,OsCRP6, cpRNP6,OsCRP7, cpRNP7,OsCRP8, cpRNP8,OsCRP3, cpRNP3,OsCRP1, cpRNP1, OsCP31A, CP31A
49390	33364055	Ayaad M., Han Z., Zheng K., Hu G., Abo-Yousef M., Sobeih S.E.S., Xing Y.	Bin-based genome-wide association studies reveal superior alleles for improvement of appearance quality using a 4-way MAGIC population in rice.	Journal of Advanced Research	28	183-194	2021	_	
49391	33595759	Ye Y., Wang S., Wu K., Ren Y., Jiang H., Chen J., Tao L., Fu X., Liu B., Wu Y.	A Semi-Dominant Mutation in OsCESA9 Improves salt tolerance and Favors Field Straw Decay Traits by Altering Cell Wall Properties in Rice.	Rice (N Y)	14(1)	19	2021	CESA7,BC6,BC7,KAT1,SKC1,SOS1	OsCesA7, OsCESA7, OS_CESA07, OsCesA 7, CesA7,Bc6*, Bc6, OsCesA9, CESA9, OsCESA9, OS_CESA09, OsCesA 9, CesA9, BC88, SDBC1, OsSDBC1,OsCesA4, OsCESA4, CESA4, OS_CESA04, BC11, bc7t, Bc7(t), bc-7, OsCesA 4, CesA4, FC17/CESA4, FC17, OsFC17,OsKAT1, OsKAT3,OsHKT8, HKT8, Os-HKT1;5, OsHKT1;5, HKT1;5, SKC1, qSKC-1(t), OsSKC1,OsSOS1, OsNHA1, NHA1, SOS1/NHX7, NHX7, OsNHX7
49392	33241917	Liu H., Dong S., Li M., Gu F., Yang G., Guo T., Chen Z., Wang J.	The Class III peroxidase gene OsPrx30, transcriptionally modulated by the AT-hook protein OsATH1, mediates rice bacterial blight-induced ROS accumulation.	J Integr Plant Biol	63(2)	393-408	2021	ATH1,PRX30	OsATH1,prx30, OsPrx30
49393	33608460	Taylor I., Lehner K., McCaskey E., Nirmal N., Ozkan-Aydin Y., Murray-Cooper M., Jain R., Hawkes E.W., Ronald P.C., Goldman D.I., Benfey P.N.	Mechanism and function of root circumnutation.	Proc. Natl. Acad. Sci. U.S.A.	118(8)		2021	RAU1,HK1	OsLAX1, OsRAU1, OsAUX1, LAX1, AUX1,OsHK1, OHK1, MHZ1/OsHK1, MHZ1, OsMHZ1
49394	33671842	Kabange N.R., Park S.Y., Lee J.Y., Shin D., Lee S.M., Kwon Y., Cha J.K., Cho J.H., Duyen D.V., Ko J.M., Lee J.H.	New Insights into the Transcriptional Regulation of Genes Involved in the Nitrogen Use Efficiency under Potassium Chlorate in Rice (<i>Oryza sativa</i> L.).	Int J Mol Sci	22(4)		2021	_,_,AMT2;3,GLT1,AMT1;3,NPF6.5,GLT2,_	OsNIA2, NIA2, OsNR2, NR2, OsNR3, NR3, OsNR1.2, NR1.2,OsNR1, NR1, nia1, OsNIA1, NIA1, OsNIA2, NIA2,OsAMT2;3, AMT2;3, OsAMT2.3,OsGLT1, OsNADH-GOGAT1, NADH-GOGAT1, OsNADH-GOGAT, GOGAT, NADH-GOGAT, OsGOGAT1, GOGAT1, OsGLU1,OsAMT1;3, AMT1-3, Osamt1-2, "OsAMT1,2", OsAMT1;2, OsAMT1.3, AMT1.2,OsNRT1.1B, NRT1.1B, OsNPF6.5,OsGLT2, OsNADH-GOGAT2, NADH-GOGAT2, OsGOGAT2, GOGAT2, OsGLU2, GLU2,OsNIA1, OsNia1, NIA1, Nia1, OsNR, NR, OsNR2, NR2, NIA2
49395	33647940	Zhang P., Zhu C., Geng Y., Wang Y., Yang Y., Liu Q., Guo W., Chachar S., Riaz A., Yan S., Yang L., Yi K., Wu C., Gu X.	Rice and Arabidopsis homologs of yeast CHROMOSOME TRANSMISSION FIDELITY PROTEIN 4 commonly interact with Polycomb complexes but exert divergent regulatory functions.	Plant Cell			2021	CLF,PSF2,LHP1,KRP6,DRW1,POLA,KRP1	OsSET24, SDG711, EZ1, OsCLF, OsSDG711,OsPSF2, OsGINS, GINS,OsLHP1,OsiICK4, Orysa;KRP6, OrysaICK4, Orysa;ICK4, OsKRP6, OsKRP5,OsWD40-166, WD40-166, OsDRW1,  OsDWD47, DWD47,OSPOLA, Ospolalpha, OsDNAP, DNAP,OsiICK1, Orysa;KRP1, OrysaICK1, Orysa;ICK1, CDKI, OsICK1, ICK1, OsKRP1
49396	33526925	Wei X., Qiu J., Yong K., Fan J., Zhang Q., Hua H., Liu J., Wang Q., Olsen K.M., Han B., Huang X.	A quantitative genomics map of rice provides genetic insights and guides breeding.	Nat. Genet.	53(2)	243-253	2021		
49397	33154527	Nanda S., Yuan S.Y., Lai F.X., Wang W.X., Fu Q., Wan P.J.	Identification and analysis of miRNAs in IR56 rice in response to BPH infestations of different virulence levels.	Sci Rep	10(1)	19093	2020		
49398	33396125	Mao Q., Tang L., Ji W., Rennenberg H., Hu B., Ma M.	Elevated CO2 and soil mercury stress affect photosynthetic characteristics and mercury accumulation of rice.	Ecotoxicol. Environ. Saf.	208	111605	2021		
49399	33329656	Ramalingam J., Raveendra C., Savitha P., Vidya V., Chaithra T.L., Velprabakaran S., Saraswathi R., Ramanathan A., Arumugam Pillai MP., Arumugachamy S., Vanniarajan C.	Gene Pyramiding for Achieving Enhanced Resistance to Bacterial Blight, Blast, and Sheath Blight Diseases in Rice.	Front Plant Sci	11	591457	2020		
49400	33139793	Hossain N., Nizamuddin S., Griffin G., Selvakannan P., Mubarak N.M., Mahlia T.M.I.	Synthesis and characterization of rice husk biochar via hydrothermal carbonization for wastewater treatment and biofuel production.	Sci Rep	10(1)	18851	2020		
49401	33188807	Siddiqui M.N., Mostofa M.G., Rahman M.M., Tahjib-Ul-Arif M., Das A.K., Mohi-Ud-Din M., Rohman M.M., Hafiz H.R., Ansary M.M.U., Tran L.P.	Glutathione improves rice tolerance to submergence: insights into its physiological and biochemical mechanisms.	J. Biotechnol.	325	109-118	2021		
49402	33613058	Iqbal A., Xie H., He L., Ahmad S., Hussain I., Raza H., Khan A., Wei S., Quan Z., Wu K., Ali I., Jiang L.	Partial substitution of organic nitrogen with synthetic nitrogen enhances rice yield, grain starch metabolism and related genes expression under the dual cropping system.	Saudi J Biol Sci	28(2)	1283-1296	2021		
49403	33164144	Du Y., Mo W., Ma T., Tang W., Tian L., Lin R.	A pentatricopeptide repeat protein DUA1 interacts with sigma factor 1 to regulate chloroplast gene expression in Rice.	Photosyn. Res.	147(2)	131-143	2021		
49404	33137812	Sakina A., Mir S., Najeeb S., Zargar S.M., Nehvi F.A., Rather Z.A., Salgotra R.K., Shikari A.B.	Improved protocol for efficacious in vitro androgenesis and development of doubled haploids in temperate japonica rice.	PLoS ONE	15(11)	e0241292	2020		
49405	33180661	Rymen B., Ferrafiat L., Blevins T.	Non-coding RNA polymerases that silence transposable elements and reprogram gene expression in plants.	Transcription	11(3-4)	172-191			
49406	32996185	Meng Q., Zhang W., Hu X., Shi X., Chen L., Dai X., Qu H., Xia Y., Liu W., Gu M., Xu G.	Two ADP-glucose pyrophosphorylase subunits, OsAGPL1 and OsAGPS1, modulate phosphorus homeostasis in rice.	Plant J.	104(5)	1269-1284	2020		
49407	33329635	Yan H., Sun H., Jia X., Lv C., Li J., Zhao Q.	Phenotypic, Transcriptomic, and Metabolomic Signatures of Root-Specifically Overexpressed <i>OsCKX2</i> in Rice.	Front Plant Sci	11	575304	2020		
49408	33165813	Zheng X., Xin Y., Peng Y., Shan J., Zhang N., Wu D., Guo J., Huang J., Guan W., Shi S., Zhou C., Chen R., Du B., Zhu L., Yang F., Fu X., Yuan L., He G.	Lipidomic analyses reveal enhanced lipolysis in planthoppers feeding on resistant host plants.	Sci China Life Sci			2020		
49409	33241156	Banerjee A.K., Mal C.	Underpinning miRNA-miRNA co-functional interaction patterns in the metabolism of Oryza sativa by genome-scale network analysis.	Heliyon	6(11)	e05496	2020		
49410	33202609	Brabham C., Norsworthy J.K., Gonz?lez-Torralva F.	Presence of the <i>HPPD Inhibitor Sensitive 1</i> Gene and ALSS653N Mutation in Weedy <i>Oryza sativa</i> Sensitive to Benzobicyclon.	Plants (Basel)	9(11)		2020		
49411	33182265	Qin H., Li Y., Huang R.	Advances and Challenges in the Breeding of Salt-Tolerant Rice.	Int J Mol Sci	21(21)		2020		
49412	33221412	Lu S., Zhu T., Wang Z., Luo L., Wang S., Lu M., Cui Y., Zou B., Hua J.	Arabidopsis immune-associated nucleotide-binding genes repress heat tolerance at the reproductive stage by inhibiting the unfolded protein response and promoting cell death.	Mol Plant	14(2)	267-284	2021		
49413	33208102	Gao L., Lu Z., Ding L., Xie K., Wang M., Ling N., Guo S.	Anatomically induced changes in rice leaf mesophyll conductance explain the variation in photosynthetic nitrogen use efficiency under contrasting nitrogen supply.	BMC Plant Biol.	20(1)	527	2020		
49414	33269182	Ghosh P., Roychoudhury A.	Nutrition and antioxidant profiling in the unpolished and polished grains of eleven indigenous aromatic rice cultivars.	3 Biotech	10(12)	548	2020		
49415	33220510	Lv Y., Shao G., Jiao G., Sheng Z., Xie L., Hu S., Tang S., Wei X., Hu P.	Targeted mutagenesis of POLYAMINE OXIDASE 5 that negatively regulates mesocotyl elongation enables the generation of direct-seeding rice with improved grain yield.	Mol Plant	14(2)	344-351	2021		
49416	33260543	Marques A.C., Lidon F.C., Coelho A.R.F., Pessoa C.C., Lu?s IC., Scotti-Campos P., Sim?es M., Almeida A.S., Legoinha P., Pessoa M.F., Galhano C., Guerra M.A.M., Leit?o RG., Ramalho J.C., Semedo J.M.N., Bagulho A., Moreira J., Rodrigues A.P., Marques P., Silva C., Ribeiro-Barros A., Silva M.J., Silva M.M., Oliveira K., Ferreira D., Pais I.P., Reboredo F.H.	Quantification and Tissue Localization of Selenium in Rice (<i>Oryza sativa</i> L., Poaceae) Grains: A Perspective of Agronomic Biofortification.	Plants (Basel)	9(12)		2020		
49417	33186373	Huang B., Gan L., Chen D., Zhang Y., Zhang Y., Liu X., Chen S., Wei Z., Tong L., Song Z., Zhang X., Cai D., Zhang C., He Y.	Integration of small RNA, degradome and proteome sequencing in Oryza sativa reveals a delayed senescence network in tetraploid rice seed.	PLoS ONE	15(11)	e0242260	2020		
49418	33240639	Ali I., Ullah S., He L., Zhao Q., Iqbal A., Wei S., Shah T., Ali N., Bo Y., Adnan M., Amanullah, Jiang L.	Combined application of biochar and nitrogen fertilizer improves rice yield, microbial activity and N-metabolism in a pot experiment.	PeerJ	8	e10311	2020		
49419	33227482	Zheng X., Zhu L., He G.	Genetic and molecular understanding of host rice resistance and Nilaparvata lugens adaptation.	Curr Opin Insect Sci	45	14-20	2020		
49420	33058400	Ma X., Li F., Zhang Q., Wang X., Guo H., Xie J., Zhu X., Ullah Khan N., Zhang Z., Li J., Li Z., Zhang H.	Genetic architecture to cause dynamic change in tiller and panicle numbers revealed by genome-wide association study and transcriptome profile in rice.	Plant J.	104(6)	1603-1616	2020		
49421	33329069	Zhu H., Zheng S., Xu J., Wu Q., Song Q., Ge L.	The Amino Acid-Mediated TOR Pathway Regulates Reproductive Potential and Population Growth in <i>Cyrtorhinus lividipennis</i> Reuter (Hemiptera: Miridae).	Front Physiol	11	617237	2020		
49422	33243712	Yan G., Fan X., Tan L., Yin C., Li T., Liang Y.	Root silicon deposition and its resultant reduction of sodium bypass flow is modulated by OsLsi1 and OsLsi2 in rice.	Plant Physiol. Biochem.	158	219-227	2021		
49423	33294693	Asante M.D., Amadu B., Traore V.S.E., Oppong A., Adebayo M.A., Aculey P., Marfo E.A., Kang K.H.	Assessment of Korean rice lines for their reaction to rice yellow mottle virus in Ghana.	Heliyon	6(11)	e05551	2020		
49424	33173096	Xie X., Chen Z., Zhang B., Guan H., Zheng Y., Lan T., Zhang J., Qin M., Wu W.	Transcriptome analysis of xa5-mediated resistance to bacterial leaf streak in rice (Oryza sativa L.).	Sci Rep	10(1)	19439	2020		
49425	33240296	Yamburenko M.V., Worthen J.M., Zeenat A., Azhar B.J., Swain S., Couitt A.R., Shakeel S.N., Kieber J.J., Schaller G.E.	Functional Analysis of the Rice Type-B Response Regulator RR22.	Front Plant Sci	11	577676	2020		
49426	33140950	Zhang C., Yang Y., Chen Z., Chen F., Pan L., Lu Y., Li Q., Fan X., Sun Z., Liu Q.	Characteristics of Grain Physicochemical Properties and the Starch Structure in Rice Carrying a Mutated <i>ALK/SSIIa</i> Gene.	J. Agric. Food Chem.	68(47)	13950-13959	2020		
49427	33603560	Takahashi R., Ito M., Kato K., Kodama I., Shibata S., Sato K., Takahashi R., Matsumoto S., Kawamoto T.	Breeding and characterization of the high cadmium-accumulating rice line 'Akita 119'.	Breed. Sci.	70(5)	631-636	2020		
49428	33277064	Wiggenhauser M., Aucour A.M., Bureau S., Campillo S., Telouk P., Romani M., Ma J.F., Landrot G., Sarret G.	Cadmium transfer in contaminated soil-rice systems: Insights from solid-state speciation analysis and stable isotope fractionation.	Environ. Pollut.	269	115934	2021		
49429	33157456	Jia S., Chang S., Wang H., Chu Z., Xi C., Liu J., Zhao H., Han S., Wang Y.	Transcriptomic analysis reveals the contribution of auxin on the differentially developed caryopses on primary and secondary branches in rice.	J. Plant Physiol.	256	153310	2021		
49430	32876070	Khalmuratova I., Choi D.H., Woo J.R., Jeong M.J., Oh Y., Kim Y.G., Lee I.J., Choo Y.S., Kim J.G.	Diversity and Plant Growth-Promoting Effects of Fungal Endophytes Isolated from Salt-Tolerant Plants.	J. Microbiol. Biotechnol.	30(11)	1680-1687	2020		
49431	33240295	Feng L., Wu B., Zhu S., Wang J., Su Z., Liu F., He Y., Zhang C.	Investigation on Data Fusion of Multisource Spectral Data for Rice Leaf Diseases Identification Using Machine Learning Methods.	Front Plant Sci	11	577063	2020		
49432	33603554	Orn C., Saito H., Khan M.A.I., Nhuiyan M.R., Vathany T., Khay S., Makara O., Fukuta Y.	Genetic variation of rice (<i>Oryza sativa</i> L.) germplasm in Cambodia.	Breed. Sci.	70(5)	576-585	2020		
49433	33224708	Chen Q., Tang W., Zeng G., Sheng H., Shi W., Xiao Y.	Reduction of cadmium accumulation in the grains of male sterile rice Chuang-5S carrying <i>Pi48</i> or <i>Pi49</i> through marker-assisted selection.	3 Biotech	10(12)	539	2020		
49434	33312184	Nakamura Y., Ono M., Hatta T., Kainuma K., Yashiro K., Matsuba G., Matsubara A., Miyazato A., Mizutani G.	Effects of BEIIb-Deficiency on the Cluster Structure of Amylopectin and the Internal Structure of Starch Granules in Endosperm and Culm of <i>Japonica</i>-Type Rice.	Front Plant Sci	11	571346	2020		
49435	33142315	Majeed M., Bhatti K.H., Amjad M.S., Abbasi A.M., Bussmann R.W., Nawaz F., Rashid A., Mehmood A., Mahmood M., Khan W.M., Ahmad K.S.	Ethno-veterinary uses of Poaceae in Punjab, Pakistan.	PLoS ONE	15(11)	e0241705	2020		
49436	33148178	Tian D., Yang F., Niu Y., Lin Y., Chen Z., Li G., Luo Q., Wang F., Wang M.	Loss function of SL (sekiguchi lesion) in the rice cultivar Minghui 86 leads to enhanced resistance to (hemi)biotrophic pathogens.	BMC Plant Biol.	20(1)	507	2020		
49437	33140972	Tang Y., Hou S., Yang Y., Cheng D., Gao B., Wan Y., Li Y.C., Yao Y., Zhang S., Xie J.	Activation of Humic Acid in Lignite Using Molybdate-Phosphorus Hierarchical Hollow Nanosphere Catalyst Oxidation: Molecular Characterization and Rice Seed Germination-Promoting Performances.	J. Agric. Food Chem.	68(47)	13620-13631	2020		
49438	33217583	Liu Y., Wang W., Li Y., Liu F., Han W., Li J.	Transcriptomic and proteomic responses to brown plant hopper (Nilaparvata lugens) in cultivated and Bt-transgenic rice (Oryza sativa) and wild rice (O. rufipogon).	J Proteomics	232	104051	2021		
49439	33246053	Cai M., Zhu S., Wu M., Zheng X., Wang J., Zhou L., Zheng T., Cui S., Zhou S., Li C., Zhang H., Chai J., Zhang X., Jin X., Cheng Z., Zhang X., Lei C., Ren Y., Lin Q., Guo X., Zhao L., Wang J., Zhao Z., Jiang L., Wang H., Wan J.	DHD4, a CONSTANS-like family transcription factor, delays heading date by affecting the formation of the FAC complex in rice.	Mol Plant	14(2)	330-343	2021	DHD4	OsCCT02, OsCCT2, OsCMF2, OsSTA46, OsDHD4, CCT02, CCT2, CMF2, STA46
49440	33234605	Lian T., Huang Y., Xie X., Huo X., Shahid M.Q., Tian L., Lan T., Jin J.	Rice <i>SST</i> Variation Shapes the Rhizosphere Bacterial Community, Conferring Tolerance to Salt Stress through Regulating Soil Metabolites.	mSystems	5(6)		2020	SST	OsSPL10, SPL10, OsSST, SST/OsSPL10
49441	33175890	Woods B.J., Gallego-Castillo S., Talsma E.F., ?lvarez D.	The acceptance of zinc biofortified rice in Latin America: A consumer sensory study and grain quality characterization.	PLoS ONE	15(11)	e0242202	2020		
49442	33256095	Badro H., Ndjiondjop M.N., Furtado A., Henry R.	Sequence Variants Linked to Key Traits in Interspecific Crosses between African and Asian Rice.	Plants (Basel)	9(12)		2020		
49443	33169285	Tao Y., Miao J., Wang J., Li W., Xu Y., Wang F., Jiang Y., Chen Z., Fan F., Xu M., Zhou Y., Liang G., Yang J.	RGG1, Involved in the Cytokinin Regulatory Pathway, Controls grain size in Rice.	Rice (N Y)	13(1)	76	2020	IPT9,RGG1,LOG1	OsIPT9, OsIPT5, IPT5,OsRGG1,OsLOG1, LOG, Log, log, OsLOG
49444	33299803	Macharoen K., McDonald K.A., Nandi S.	A method to simplify bioreactor processing for recombinant protein production in rice cell suspension cultures.	MethodsX	7	101139	2020		
49445	33009812	Neang S., de Ocampo M., Egdane J.A., Platten J.D., Ismail A.M., Seki M., Suzuki Y., Skoulding N.S., Kano-Nakata M., Yamauchi A., Mitsuya S.	A GWAS approach to find SNPs associated with salt removal in rice leaf sheath.	Ann. Bot.	126(7)	1193-1202	2020		
49446	33165814	Zhang R., Chen S., Meng X., Chai Z., Wang D., Yuan Y., Chen K., Jiang L., Li J., Gao C.	Generating broad-spectrum tolerance to ALS-inhibiting herbicides in rice by base editing.	Sci China Life Sci			2020		
49447	33205288	Jain A., Chatterjee A., Das S.	Synergistic consortium of beneficial microorganisms in rice rhizosphere promotes host defense to blight-causing Xanthomonas oryzae pv. oryzae.	Planta	252(6)	106	2020		
49448	33386250	Chen Z., Li X., Lu H., Gao Q., Du H., Peng H., Qin P., Liang C.	Genomic atlases of introgression and differentiation reveal breeding footprints in Chinese cultivated rice.	J Genet Genomics	47(10)	637-649	2020		
49449	33155076	Qu H., Jackson M.A., Yap K., Harvey P.J., Gilding E.K., Craik D.J.	Production of a structurally validated cyclotide in rice suspension cells is enabled by a supporting biosynthetic enzyme.	Planta	252(6)	97	2020		
49450	33281848	Huang K., Zhou S., Shen K., Zhou Y., Wang F., Jiang X.	Elucidation of the miR164c-Guided Gene/Protein Interaction Network Controlling Seed Vigor in Rice.	Front Plant Sci	11	589005	2020		
49451	32689901	Chen C.Y., Chen S.Y., Liu C.W., Wu D.H., Kuo C.C., Lin C.C., Chou H.P., Wang Y.Y., Tsai Y.C., Lai M.H., Chung C.L.	Invasion and Colonization Pattern of <i>Fusarium fujikuroi</i> in Rice.	Phytopathology	110(12)	1934-1945	2020		
49452	33224168	Kuniyoshi D., Masuda I., Kanaoka Y., Shimazaki-Kishi Y., Okamoto Y., Yasui H., Yamamoto T., Nagaki K., Hoshino Y., Koide Y., Takamure I., Kishima Y.	Diploid Male Gametes Circumvent hybrid sterility Between Asian and African Rice Species.	Front Plant Sci	11	579305	2020		
49453	33203163	Dubina E., Kostylev P., Ruban M., Lesnyak S., Krasnova E., Azarin K.	Rice Breeding in Russia Using Genetic Markers.	Plants (Basel)	9(11)		2020		
49454	33157261	Ahmed S., Rashid M.A.R., Zafar S.A., Azhar M.T., Waqas M., Uzair M., Rana I.A., Azeem F., Chung G., Ali Z., Atif R.M.	Genome-wide investigation and expression analysis of APETALA-2 transcription factor subfamily reveals its evolution, expansion and regulatory role in abiotic stress responses in Indica Rice (Oryza sativa L. ssp. indica).	Genomics	113(1 Pt 2)	1029-1043	2021		
49455	33160103	Paiva A.L.S., Passaia G., Jardim-Messeder D., Nogueira F.C.S., Domont G.B., Margis-Pinheiro M.	The mitochondrial isoform Glutathione peroxidase 3 (OsGPX3) is involved in ABA responses in rice plants.	J Proteomics	232	104029	2021		
49456	33159615	Khan N., Essemine J., Hamdani S., Qu M., Lyu M.A., Perveen S., Stirbet A., Govindjee G., Zhu X.G.	Natural variation in the fast phase of chlorophyll a fluorescence induction curve (OJIP) in a global rice minicore panel.	Photosyn. Res.			2020		
49457	33233373	Imran M., Hussain S., El-Esawi MA., Rana M.S., Saleem M.H., Riaz M., Ashraf U., Potcho M.P., Duan M., Rajput I.A., Tang X.	Molybdenum Supply Alleviates the Cadmium Toxicity in Fragrant Rice by Modulating oxidative stress and Antioxidant Gene Expression.	Biomolecules	10(11)		2020		
49458	33184696	Awasthi J.P., Kusunoki K., Saha B., Kobayashi Y., Koyama H., Panda S.K.	Comparative RNA-Seq analysis of the root revealed transcriptional regulation system for aluminum tolerance in contrasting indica rice of North East India.	Protoplasma	258(3)	517-528	2021		
49459	33181256	Qin C., Guo Y., Wu J., Wang L., Traw M.B., Zhang Y.	Comparative population genomic analysis provides insights into breeding of modern indica rice in China.	Gene	768	145303	2021		
49460	33179435	Tai L., Huang S., Zhao Z., Huang G.	Chemical composition analysis and antioxidant activity of black rice pigment.	Chem Biol Drug Des	97(3)	711-720	2021		
49461	33613059	Zhang J., Li F., Liao P., Khan A., Hussain I., Iqbal A., Ali I., Wei B., Jiang L.	Smash ridge tillage strongly influence soil functionality, physiology and rice yield.	Saudi J Biol Sci	28(2)	1297-1307	2021		
49462	33281789	Sun F., Hu P., Wang W., Lan Y., Du L., Zhou Y., Zhou T.	Rice Stripe Virus Coat Protein-Mediated Virus Resistance Is Associated With RNA Silencing in <i>Arabidopsis</i>.	Front Microbiol	11	591619	2020		
49463	33176681	Liu Y., Liu X., Wang X., Gao K., Qi W., Ren H., Hu H., Sun D., Bai J., Zheng S.	Heterologous expression of heat stress-responsive AtPLC9 confers heat tolerance in transgenic rice.	BMC Plant Biol.	20(1)	514	2020		
49464	33255557	Zhang H., San M.L., Jang S.G., Lee J.H., Kim N.E., Lee A.R., Park S.Y., Cao F.Y., Chin J.H., Kwon S.W.	Genome-Wide Association Study of Root System Development at Seedling Stage in Rice.	Genes (Basel)	11(12)		2020		
49465	33220119	Misra G., Badoni S., Parween S., Singh R.K., Leung H., Ladejobi O., Mott R., Sreenivasulu N.	Genome-wide association coupled gene to gene interaction studies unveil novel epistatic targets among major effect loci impacting rice grain chalkiness.	Plant Biotechnol. J.			2020		
49466	33167299	Kumar I.S., Nadarajah K.	A Meta-Analysis of Quantitative Trait Loci Associated with Multiple disease resistance in Rice (<i>Oryza sativa</i> L.).	Plants (Basel)	9(11)		2020		
49467	33203889	Ren J., Zhang F., Gao F., Zeng L., Lu X., Zhao X., Lv J., Su X., Liu L., Dai M., Xu J., Ren G.	Transcriptome and genome sequencing elucidates the molecular basis for the high yield and good quality of the hybrid rice variety Chuanyou6203.	Sci Rep	10(1)	19935	2020		
49468	33063940	Sun T., Hasegawa T., Liu B., Tang L., Liu L., Cao W., Zhu Y.	Current rice models underestimate yield losses from short-term heat stresses.	Glob Chang Biol	27(2)	402-416	2021		
49469	33202900	Marzec M., Situmorang A., Brewer P.B., Br?szewska A.	Diverse Roles of MAX1 Homologues in Rice.	Genes (Basel)	11(11)		2020		
49470	33237489	Chandrakanth R., Sunil L., Sadashivaiah L., Devaki N.S.	In silico modelling and characterization of eight blast resistance proteins in resistant and susceptible rice cultivars.	J Genet Eng Biotechnol	18(1)	75	2020		
49471	33243137	Zhu D., Zhang Y., Xiang J., Wang Y., Zhu D., Zhang Y., Chen H.	Genetic analysis of rice seedling traits related to machine transplanting under different seeding densities.	BMC Genet.	21(1)	133	2020		
49472	33391797	Guo Z., Cai L., Chen Z., Wang R., Zhang L., Guan S., Zhang S., Ma W., Liu C., Pan G.	Identification of candidate genes controlling chilling tolerance of rice in the cold region at the booting stage by BSA-Seq and RNA-Seq.	R Soc Open Sci	7(11)	201081	2020		
49473	33228024	Chen X., Mei Q., Liang W., Sun J., Wang X., Zhou J., Wang J., Zhou Y., Zheng B., Yang Y., Chen J.	Gene Mapping, Genome-Wide Transcriptome Analysis, and WGCNA Reveals the Molecular Mechanism for Triggering Programmed Cell Death in Rice Mutant <i>pir1</i>.	Plants (Basel)	9(11)		2020	PIR1	OsPIR1
49474	33218175	Li J., Islam S., Guo P., Hu X., Dong W.	Isolation of Antimicrobial Genes from <i>Oryza rufipogon</i> Griff by Using a <i>Bacillus</i><i>subtilis</i> Expression System with Potential Antimicrobial Activities.	Int J Mol Sci	21(22)		2020		
49475	33281851	Fan Z., Wang K., Rao J., Cai Z., Tao L.Z., Fan Y., Yang J.	Interactions Among Multiple Quantitative Trait Loci Underlie Rhizome Development of Perennial Rice.	Front Plant Sci	11	591157	2020		
49476	33236382	Tahjib-Ul-Arif M., Sohag A.A.M., Mostofa M.G., Polash M.A.S., Mahamud AGMSU., Afrin S., Hossain M.A., Hossain M.A., Murata Y., Tran L.P.	Comparative effects of ascobin and glutathione on copper homeostasis and oxidative stress metabolism in mitigation of copper toxicity in rice.	Plant Biol (Stuttg)			2020		
49477	33171821	Jang Y.H., Park J.R., Kim K.M.	Antimicrobial Activity of Chrysoeriol 7 and Chochlioquinone 9, White-Backed Planthopper-Resistant Compounds, Against Rice Pathogenic Strains.	Biology (Basel)	9(11)		2020		
49478	33234381	Tefera W., Tang L., Lu L., Xie R., Seifu W., Tian S.	Rice cultivars significantly mitigate cadmium accumulation in grains and its bioaccessibility and toxicity in human HL-7702?cells.	Environ. Pollut.	272	116020	2021		
49479	33388659	Chandra T., Mishra S., Panda B.B., Sahu G., Dash S.K., Shaw B.P.	Study of expressions of miRNAs in the spikelets based on their spatial location on panicle in rice cultivars provided insight into their influence on grain development.	Plant Physiol. Biochem.	159	244-256	2021		
49480	33308141	Yang D., He N., Zheng X., Zhen Y., Xie Z., Cheng C., Huang F.	Cloning of long sterile lemma (lsl2), a single recessive gene that regulates spike germination in rice (Oryza sativa L.).	BMC Plant Biol.	20(1)	561	2020	G1	g1 (lng), lng, g1, ELE, Os ELE, OsG1, G1/ELE, LSL2, OsLSL2
49481	33343630	Kandpal M., Vishwakarma C., Krishnan K., Chinnusamy V., Pareek A., Sharma M.K., Sharma R.	Gene Expression Dynamics in Rice Peduncles at the Heading Stage.	Front Genet	11	584678	2020		
49482	33360287	Ghorbani A., Tafteh M., Roudbari N., Pishkar L., Zhang W., Wu C.	Piriformospora indica augments arsenic tolerance in rice (Oryza sativa) by immobilizing arsenic in roots and improving iron translocation to shoots.	Ecotoxicol. Environ. Saf.	209	111793	2021		
49483	33316467	Zhang Z., Li Z., Wang W., Jiang Z., Guo L., Wang X., Qian Y., Huang X., Liu Y., Liu X., Qiu Y., Li A., Yan Y., Xie J., Cao S., Kopriva S., Li L., Kong F., Liu B., Wang Y., Hu B., Chu C.	Modulation of nitrate-induced phosphate response by the MYB transcription factor RLI1/HINGE1 in the nucleus.	Mol Plant	14(3)	517-529	2021	SPX1,SPX2,SPX4,NIGT1,RLI1,GRAS47,PT6,LBD38,PHR2,NPF6.5,HINGE3,ERF69	OsSPX1,OsSPX2,OsSPX4, Os-SPX4,OsNIGT1, HINGE6, OsHINGE6,OsRLI1, RLI1/HINGE1, HINGE1, OsHINGE1,OsGRAS-47, OsGRAS47, GRAS-47, HINGE4, OsHINGE4,OsPT6, PHT1-6, OsPht1;6, OsLPT6:1, OsLPT1, OsPT6:1, Pht1;6, LPT6:1, LPT1, PT6:1,OsLBD38, HINGE2, OsHINGE2, LOB39, OsLOB39,OsPHR2, Os-PHR2,OsNRT1.1B, NRT1.1B, OsNPF6.5,OsHINGE3,OsERF#069, OsERF069, OsERF69, AP2/EREBP#028, AP2/EREBP28, DLN77, OsDLN77, HINGE5, OsHINGE5
49484	33505484	Liu B., Shi J., Li Z., Zhang C., Liu P., Yao W., Jia T.	Study on Neuroendocrine-Immune Function of <i>Cistanche deserticola</i> and Its Rice Wine Steaming Products in Glucocorticoid-Induced Rat Model.	Evid Based Complement Alternat Med	2020	5321976	2020		
49485	33273616	Swamy H.K.M., Anila M., Kale R.R., Rekha G., Bhadana V.P., Anantha M.S., Brajendra P., Balachiranjeevi C.H., Hajira S.K., Prasanna B.L., Pranathi K., Dilip T., Kousik MBVN., Harika G., Surekha K., Kumar R.M., Cheralu C., Shankar V.G., Laha G.S., Prasad M.S., Rao L.V.S., Madhav M.S., Balachandran S.M., Sundaram R.M.	Marker assisted improvement of low soil phosphorus tolerance in the bacterial blight resistant, fine-grain type rice variety, Improved Samba Mahsuri.	Sci Rep	10(1)	21143	2020		
49486	33348912	Pappas D., Panou M., Adamakis I.S., Gkelis S., Panteris E.	Beyond Microcystins: Cyanobacterial Extracts Induce Cytoskeletal Alterations in Rice Root Cells.	Int J Mol Sci	21(24)		2020		
49487	33383688	Usman B., Nawaz G., Zhao N., Liao S., Qin B., Liu F., Liu Y., Li R.	Programmed Editing of Rice (<i>Oryza sativa</i> L.) <i>OsSPL16</i> Gene Using CRISPR/Cas9 Improves grain yield by Modulating the Expression of Pyruvate Enzymes and Cell Cycle Proteins.	Int J Mol Sci	22(1)		2020		
49488	33396194	Khan S., Akhtar N., Rehman S.U., Shujah S., Rha E.S., Jamil M.	Biosynthesized Iron Oxide Nanoparticles (Fe3O4 NPs) Mitigate Arsenic Toxicity in Rice Seedlings.	Toxics	9(1)		2020		
49489	33592762	Shannon M., Ratnasekhar C.H., McGrath T.F., Kapil A.P., Elliott C.T.	A two-tiered system of analysis to tackle rice fraud: The Indian Basmati study.	Talanta	225	122038	2021		
49490	33302124	Peng G., He Y., Wang M., Ashraf M.F., Liu Z., Zhuang C., Zhou H.	The structural characteristics and the substrate recognition properties of RNase ZS1.	Plant Physiol. Biochem.	158	83-90	2021		
49491	33383335	Ahmed T., Noman M., Manzoor N., Shahid M., Abdullah M., Ali L., Wang G., Hashem A., Al-Arjani AF., Alqarawi A.A., Abd Allah EF., Li B.	Nanoparticle-based amelioration of drought stress and cadmium toxicity in rice via triggering the stress responsive genetic mechanisms and nutrient acquisition.	Ecotoxicol. Environ. Saf.	209	111829	2021		
49492	33272567	Xu G., Zhang Y., Li M., Jiao X., Zhou L., Ming Z.	Crystal structure of the acyl acid amido synthetase GH3-8 from Oryza sativa.	Biochem. Biophys. Res. Commun.	534	266-271	2021		
49493	33276523	Zombori Z., Nagy B., Mih?ly R., Pauk J., Cseri A., Sass L., Horv?th V G., Dudits D.	RING-Type E3 Ubiqitin Ligase Barley Genes (<i>HvYrg1-2</i>) Control Characteristics of Both Vegetative Organs and Seeds as Yield Components.	Plants (Basel)	9(12)		2020		
49494	33353010	Afzal J., Saleem M.H., Batool F., Elyamine A.M., Rana M.S., Shaheen A., El-Esawi MA., Tariq Javed M., Ali Q., Arslan Ashraf M., Hussain G.S., Hu C.	Role of Ferrous Sulfate (FeSO4) in Resistance to Cadmium Stress in Two Rice (<i>Oryza sativa</i> L.) Genotypes.	Biomolecules	10(12)		2020		
49495	33374298	Jiang M., Liu Y., Li R., Li S., Tan Y., Huang J., Shu Q.	An <i>Inositol 1</i>,<i>3</i>,<i>4</i>,<i>5</i>,<i>6-Pentakisphosphate 2-Kinase 1</i> Mutant with a 33-nt Deletion Showed Enhanced Tolerance to Salt and Drought Stress in Rice.	Plants (Basel)	10(1)		2020		
49496	33425929	Chen Z., Shen Z., Xu L., Zhao D., Zou Q.	Regulator Network Analysis of Rice and Maize Yield-Related Genes.	Front Cell Dev Biol	8	621464	2020		
49497	33371381	Wang J., Li K., Shao Y., Zhang F., Wang Z., Guo X., Qin Y., Liu X.	Analysis of Combining SAR and Optical Optimal Parameters to Classify Typhoon-Invasion Lodged Rice: A Case Study Using the Random Forest Method.	Sensors (Basel)	20(24)		2020		
49498	33374758	Bian Z., Gao H., Wang C.	NAC Transcription Factors as Positive or Negative Regulators during Ongoing Battle between Pathogens and Our Food Crops.	Int J Mol Sci	22(1)		2020		
49499	33335534	Wang X.J., Jiao Y., Ma S., Yang J.T., Wang Z.X.	Whole-Genome Sequencing: An Effective Strategy for Insertion Information Analysis of Foreign Genes in Transgenic Plants.	Front Plant Sci	11	573871	2020		
49500	33215722	Wei Z., Duan F., Sun X., Song X., Zhou W.	Leaf photosynthetic and anatomical insights into mechanisms of acclimation in rice in response to long-term fluctuating light.	Plant Cell Environ.	44(3)	747-761	2021		
49501	33301482	Hussain B., Li J., Ma Y., Tahir N., Ullah A.	Effects of Fe and Mn cations on Cd uptake by rice plant in hydroponic culture experiment.	PLoS ONE	15(12)	e0243174	2020		
49502	33300429	Bae K.D., Um T.Y., Yang W.T., Park T.H., Hong S.Y., Kim K.M., Chung Y.S., Yun D.J., Kim D.H.	Characterization of dwarf and narrow leaf (<i>dnl-4</i>) mutant in rice.	Plant Signal Behav	16(2)	1849490	2021	DNL4	DNL-4, OsDNL-4, OsDNL4
49503	33284386	Ji Y., Guan F., Zhou X., Liu X., Wu N., Liu D., Tian J.	Construction of a mApple-D6A3-mediated biosensor for detection of heavy metal ions.	AMB Express	10(1)	213	2020		
49504	33391352	Chen T.S., Aoike T., Yamasaki M., Kajiya-Kanegae H., Iwata H.	Predicting Rice heading date Using an Integrated Approach Combining a Machine Learning Method and a Crop Growth Model.	Front Genet	11	599510	2020		
49505	33343590	Yu F., Feng S., Du W., Wang D., Guo Z., Xing S., Jin Z., Cao Y., Xu T.	A Study of Nitrogen Deficiency Inversion in Rice Leaves Based on the Hyperspectral Reflectance Differential.	Front Plant Sci	11	573272	2020		
49506	33306159	Tian D., Chen Z., Lin Y., Chen Z., Bui K.T., Wang Z., Wang F.	Weighted Gene Co-Expression Network Coupled with a Critical-Time-Point Analysis during Pathogenesis for Predicting the Molecular Mechanism Underlying Blast Resistance in Rice.	Rice (N Y)	13(1)	81	2020		
49507	33145857	Zou X., Du Y., Wang X., Wang Q., Zhang B., Chen J., Chen M., Doyle J.J., Ge S.	Genome evolution in Oryza allopolyploids of various ages: Insights into the process of diploidization.	Plant J.	105(3)	721-735	2021		
49508	33277598	Subudhi P.K., Shankar R., Jain M.	Whole genome sequence analysis of rice genotypes with contrasting response to salinity stress.	Sci Rep	10(1)	21259	2020		
49509	33302870	Du J., Shen T., Xiong Q., Zhu C., Peng X., He X., Fu J., Ouyang L., Bian J., Hu L., Sun X., Zhou D., He H., Zhong L., Chen X.	Combined proteomics, metabolomics and physiological analyses of rice growth and grain yield with heavy nitrogen application before and after drought.	BMC Plant Biol.	20(1)	556	2020		
49510	33300089	Ghazy M.I., Salem K.F.M., Sallam A.	Utilization of genetic diversity and marker-trait to improve drought tolerance in rice (Oryza sativa L.).	Mol. Biol. Rep.	48(1)	157-170	2021		
49511	33362843	Dong N., Yin W., Liu D., Zhang X., Yu Z., Huang W., Liu J., Yang Y., Meng W., Niu M., Tong H.	Regulation of Brassinosteroid Signaling and Salt Resistance by SERK2 and Potential Utilization for Crop Improvement in Rice.	Front Plant Sci	11	621859	2020		
49512	33284383	Zhou Y., Lei F., Wang Q., He W., Yuan B., Yuan W.	Identification of Novel Alleles of the Rice Blast-Resistance Gene Pi9 through Sequence-Based Allele Mining.	Rice (N Y)	13(1)	80	2020		
49513	33424152	Nirubana V., Vanniarajan C., Aananthi N., Ramalingam J.	Screening tolerance to phosphorus starvation and haplotype analysis using phosphorus uptake 1 (<i>Pup1</i>) QTL linked markers in rice genotypes.	Physiol Mol Biol Plants	26(12)	2355-2369	2020		
49514	33169459	Mu S., Yamaji N., Sasaki A., Luo L., Du B., Che J., Shi H., Zhao H., Huang S., Deng F., Shen Z., Guerinot M.L., Zheng L., Ma J.F.	A transporter for delivering zinc to the developing tiller bud and panicle in rice.	Plant J.	105(3)	786-799	2021		
49515	33326801	Billah M., Karmakar S., Mina F.B., Haque M.N., Rashid M.M., Hasan M.F., Acharjee U.K., Talukder M.R.	Investigation of mechanisms involved in seed germination enhancement, enzymatic activity and seedling growth of rice (Oryza Sativa L.) using LPDBD (Ar+Air) plasma.	Arch. Biochem. Biophys.	698	108726	2021		
49516	33231904	Xing Y., Wang N., Zhang T., Zhang Q., Du D., Chen X., Lu X., Zhang Y., Zhu M., Liu M., Sang X., Li Y., Ling Y., He G.	SHORT-ROOT?1 is critical to cell division and tracheary element development in rice roots.	Plant J.	105(5)	1179-1191	2021	SR1	EXO70FX8, OsEXO70FX8, OsExo70FX8, OrysaFX8_Exo70, OsSR1
49517	33374424	Gaballah M.M., Metwally A.M., Skalicky M., Hassan M.M., Brestic M., El Sabagh A., Fayed A.M.	Genetic Diversity of Selected Rice Genotypes under Water Stress Conditions.	Plants (Basel)	10(1)		2020		
49518	32681796	Kou Y., Liao Y., Toivainen T., Lv Y., Tian X., Emerson J.J., Gaut B.S., Zhou Y.	Evolutionary Genomics of Structural Variation in Asian Rice (Oryza sativa) Domestication.	Mol. Biol. Evol.	37(12)	3507-3524	2020		
49519	33353295	Liang Y., Wang J., Zeng F., Wang Q., Zhu L., Li H., Guo N., Chen H.	Photorespiration Regulates Carbon-Nitrogen Metabolism by magnesium chelatase D subunit in Rice.	J. Agric. Food Chem.	69(1)	112-125	2021		
49520	33289304	Ullah F., Xu Q., Zhao Y., Zhou D.X.	Histone deacetylase HDA710 controls salt tolerance by regulating ABA signaling in rice.	J Integr Plant Biol			2020		
49521	33363560	Liu D., Xu L., Wang W., Jia S., Jin S., Gao J.	OsRRM, an RNA-binding protein, Modulates Sugar Transport in Rice (<i>Oryza sativa</i> L.).	Front Plant Sci	11	605276	2020		
49522	33302866	Mounier T., Navarro-Sanz S., Bureau C., Antoine L., Varoquaux F., Durandet F., P?rin C.	A fast, efficient and high-throughput procedure involving laser microdissection and RT droplet digital PCR for tissue-specific expression profiling of rice roots.	BMC Mol Cell Biol	21(1)	92	2020		
49523	33290949	Li M., Zhang P., Adeel M., Guo Z., Chetwynd A.J., Ma C., Bai T., Hao Y., Rui Y.	Physiological impacts of zero valent iron, Fe3O4 and Fe2O3 nanoparticles in rice plants and their potential as Fe fertilizers.	Environ. Pollut.	269	116134	2021		
49524	33362834	Zhou J., Li D., Zheng C., Xu R., Zheng E., Yang Y., Chen Y., Yu C., Yan C., Chen J., Wang X.	Targeted Transgene Expression in Rice Using a Callus Strong Promoter for Selectable Marker Gene Control.	Front Plant Sci	11	602680	2020		
49525	33603551	Thi K.M., Zheng Y., Khine E.E., Nyein E.E., Lin M.H.W., Oo K.T., New W.W., Thet M.Z.Z., Khaing M.M., Moe M.M., Aye S.S., Wu W.	Mapping of QTLs conferring high grain length-breadth relative expansion during cooking in rice cultivar Paw San Hmwe.	Breed. Sci.	70(5)	551-557	2020		
49526	33354434	Cline E., Wisittipanit N., Boongoen T., Chukeatirote E., Struss D., Eungwanichayapant A.	Recalibration of mapping quality scores in Illumina short-read alignments improves SNP detection results in low-coverage sequencing data.	PeerJ	8	e10501	2020		
49527	33276582	Zhao S., Jang S., Lee Y.K., Kim D.G., Jin Z., Koh H.J.	Genetic Basis of Tiller Dynamics of Rice Revealed by Genome-Wide Association Studies.	Plants (Basel)	9(12)		2020		
49528	33159401	Guo Z., Liu X., Zhang B., Yuan X., Xing Y., Liu H., Luo L., Chen G., Xiong L.	Genetic analyses of lodging resistance and yield provide insights into post-Green-Revolution breeding in rice.	Plant Biotechnol. J.	19(4)	814-829	2021		
49529	33190327	Cui Y., Peng Y., Zhang Q., Xia S., Ruan B., Xu Q., Yu X., Zhou T., Liu H., Zeng D., Zhang G., Gao Z., Hu J., Zhu L., Shen L., Guo L., Qian Q., Ren D.	Disruption of EARLY LESION LEAF 1, encoding a cytochrome P450 monooxygenase, induces ROS accumulation and cell death in rice.	Plant J.	105(4)	942-956	2021	SL,CYP71C8	OsSL, sl (spl1), sl*, sl, spl1, CYP71P1, Os CYP71P1, T5H, OsT5H, CYP71A1, OsCYP71A1, OsLLM1, LLM1, LLM1/OsSL, ELL1, OsELL1, ELL1/SL, OsT5H1,OsCYP71C8
49530	33317452	Zhang F., Zhang F., Huang L., Zeng D., Cruz C.V., Li Z., Zhou Y.	Comparative proteomic analysis reveals novel insights into the interaction between rice and Xanthomonas oryzae pv. oryzae.	BMC Plant Biol.	20(1)	563	2020		
49531	33348666	Yang L., Xing F., He Q., Tahir Ul Qamar M., Chen L.L., Xing Y.	Conserved Imprinted Genes between Intra-Subspecies and Inter-Subspecies Are Involved in Energy Metabolism and Seed Development in Rice.	Int J Mol Sci	21(24)		2020	BGAL14,HAIKU2	OsBgal14, OsBGal14, OsEnS-135, OsMEG2, MEG2,OsHAIKU2, OsRLK7, RLK7, OsMEG1, MEG1
49532	33307135	Liu C., Yang Z., Cai M., Shi Y., Cui H., Yuan J.	Generation of Plasmodium yoelii malaria parasite for conditional degradation of proteins.	Mol. Biochem. Parasitol.	241	111346	2021		
49533	33379335	Zhu C., Qi Q., Niu H., Wu J., Yang N., Gan L.	gamma-Aminobutyric Acid Suppresses Iron Transportation from Roots to Shoots in Rice Seedlings by Inducing Aerenchyma Formation.	Int J Mol Sci	22(1)		2020		
49534	33603553	Nakagomi K., Shigemune A., Sasahara H., Arai T., Hirabayashi H., Yamanouchi U., Ideta O.	Finding a novel QTL responsible for kernel cracking resistance from CSSLs of 'Itadaki' (<i>O. sativa</i> L.) ~ donor <i>O. rufipogon</i>.	Breed. Sci.	70(5)	567-575	2020		
49535	33391313	Gallo-Franco JJ., Sosa C.C., Ghneim-Herrera T., Quimbaya M.	Epigenetic Control of Plant Response to Heavy Metal Stress: A New View on Aluminum Tolerance.	Front Plant Sci	11	602625	2020		
49536	33691974	Yan L., Gong Y., Luo Q., Dai G.X., Teng Z., He Y., Wu X., Liu C., Tang D., Ye N., Deng G., Lin J., Liu X.	Heterologous expression of fungal AcGDH alleviates ammonium toxicity and suppresses photorespiration, thereby improving drought tolerance in rice.	Plant Sci.	305	110769	2021		
49537	33135963	Kawaguchi T., Nakamura M., Hirai H., Furukawa T., Kondo M., Che F.S.	AKSF1 Isolated From the Rice-Virulent Strain <i>Acidovorax avenae</i> K1 Is a Novel Effector That Suppresses PAMP-Triggered Immunity in Rice.	Mol. Plant Microbe Interact.	34(2)	186-197	2021		
49538	33424159	Kumar A., Panda D., Mohanty S., Biswal M., Dey P., Dash M., Sah R.P., Kumar S., Baig M.J., Behera L.	Role of sedoheptulose-1,7 bisphosphatase in low light tolerance of rice (<i>Oryza sativa</i> L.).	Physiol Mol Biol Plants	26(12)	2465-2485	2020		
49539	33296747	Guo L., Plunkert M., Luo X., Liu Z.	Developmental regulation of stolon and rhizome.	Curr. Opin. Plant Biol.	59	101970	2021		
49540	33351858	Ruzmi R., Ahmad-Hamdani MS., Mazlan N.	Correction: Ser-653-Asn substitution in the acetohydroxyacid synthase gene confers resistance in weedy rice to imidazolinone herbicides in Malaysia.	PLoS ONE	15(12)	e0244686	2020		
49541	33322777	Furutani R., Makino A., Suzuki Y., Wada S., Shimakawa G., Miyake C.	Intrinsic Fluctuations in Transpiration Induce Photorespiration to Oxidize P700 in Photosystem I.	Plants (Basel)	9(12)		2020		
49542	33307246	Zhou H., Xia D., Li P., Ao Y., Xu X., Wan S., Li Y., Wu B., Shi H., Wang K., Gao G., Zhang Q., Wang G., Xiao J., Li X., Yu S., Lian X., He Y.	Genetic architecture and key genes controlling the diversity of oil composition in rice grains.	Mol Plant	14(3)	456-469	2021		
49543	33217139	Tang Y., Abdelrahman M., Li J., Wang F., Ji Z., Qi H., Wang C., Zhao K.	CRISPR/Cas9 induces exon skipping that facilitates development of fragrant rice.	Plant Biotechnol. J.	19(4)	642-644	2021		
49544	33328509	Bharamappanavara M., Siddaiah A.M., Ponnuvel S., Ramappa L., Patil B., Appaiah M., Maganti S.M., Sundaram R.M., Shankarappa S.K., Tuti M.D., Banugu S., Parmar B., Rathod S., Barbadikar K.M., Kota S., Subbarao L.V., Mondal T.K., Channappa G.	Mapping QTL hotspots associated with weed competitive traits in backcross population derived from Oryza sativa L. and O. glaberrima Steud.	Sci Rep	10(1)	22103	2020		
49545	33388665	Mai N.T.P., Mai C.D., Nguyen H.V., Le K.Q., Duong L.V., Tran T.A., To H.T.M.	Discovery of new genetic determinants of morphological plasticity in rice roots and shoots under phosphate starvation using GWAS.	J. Plant Physiol.	257	153340	2021		
49546	33373625	Gill S.S., Chahar P., Macovei A., Yadav S., Ansari A.A., Tuteja N., Gill R.	Comparative genomic analysis reveals evolutionary and structural attributes of MCM gene family in Arabidopsis thaliana and Oryza sativa.	J. Biotechnol.	327	117-132	2021		
49547	33343588	Kishor P.B.K., Suravajhala R., Rajasheker G., Marka N., Shridhar K.K., Dhulala D., Scinthia K.P., Divya K., Doma M., Edupuganti S., Suravajhala P., Polavarapu R.	Lysine, Lysine-Rich, Serine, and Serine-Rich Proteins: Link Between Metabolism, Development, and Abiotic Stress Tolerance and the Role of ncRNAs in Their Regulation.	Front Plant Sci	11	546213	2020		
49548	33302334	Gyani P.C., Bollinedi H., Gopala Krishnan S., Vinod K.K., Sachdeva A., Bhowmick P.K., Ellur R.K., Nagarajan M., Singh A.K.	Genetic Analysis and Molecular Mapping of the Quantitative Trait Loci Governing Low Phytic Acid Content in a Novel LPA Rice Mutant, PLM11.	Plants (Basel)	9(12)		2020	PLM11	OsPLM11, qLPA8.1
49549	33498150	Yean R.A., Dilipkumar M., Rahman S., Song B.K.	A Two-in-One Strategy: Target and Nontarget Site Mechanisms Both Play Important Role in IMI-Resistant Weedy Rice.	Int J Mol Sci	22(3)		2021		
49550	33833770	Zheng Y., Xu J., Wang F., Tang Y., Wei Z., Ji Z., Wang C., Zhao K.	Mutation Types of CYP71P1 Cause Different Phenotypes of Mosaic Spot Lesion and Premature Leaf Senescence in Rice.	Front Plant Sci	12	641300	2021		
49551	33492479	Zhang L., Feng P., Deng Y., Yin W., Wan Y., Lei T., He G., Wang N.	Decreased Vascular Bundle 1 affects mitochondrial and plant development in rice.	Rice (N Y)	14(1)	13	2021	TAR1,FIB,TDD1,DVB1,COW1	OsTAR1, FBL,fib, OsFIB, OsTAR2, TAR2, TSG1, OsTSG1, OsTAA1, TAA1,OsTDD1, ASB1, OASB1, OsASbeta1, ASbeta1, TDD1/OASB1,OsDVB1,OsCOW1, oscow1, OsYUC8, YUC8, NAL7, OsNAL7, OsYUCCA8, YUCCA8, FMO, OsFMO(t), REIN7, YUC8/REIN7
49552	33429329	Xiao H., Liu Z., Zou X., Xu Y., Peng L., Hu J., Lin H.	Silencing of rice PPR gene PPS1 exhibited enhanced sensibility to abiotic stress and remarkable accumulation of ROS.	J. Plant Physiol.	258-259	153361			
49553	33409744	Miura S., Koyama N., Crofts N., Hosaka Y., Abe M., Fujita N.	Generation and Starch Characterization of Non-Transgenic BEI and BEIIb Double Mutant Rice (Oryza sativa) with Ultra-High Level of Resistant Starch.	Rice (N Y)	14(1)	3	2021		
49554	33833769	Melo F.V., Oliveira M.M., Saibo N.J.M., Louren?o TF.	Modulation of Abiotic Stress Responses in Rice by E3-Ubiquitin Ligases: A Promising Way to Develop Stress-Tolerant Crops.	Front Plant Sci	12	640193	2021		
49555	33889167	Miao Y., Cai Y., Wu H., Wang D.	Diurnal and Seasonal Variations in the Photosynthetic Characteristics and the Gas Exchange Simulations of Two Rice Cultivars Grown at Ambient and Elevated CO2.	Front Plant Sci	12	651606	2021		
49556	33392793	Mengarelli D.A., Zanor M.I.	Genome-wide characterization and analysis of the CCT motif family genes in soybean (Glycine max).	Planta	253(1)	15	2021		
49557	33469098	Liang Y., Nan W., Qin X., Zhang H.	Field performance on grain yield and quality and genetic diversity of overwintering cultivated rice (Oryza sativa L.) in southwest China.	Sci Rep	11(1)	1846	2021		
49558	33927706	Bashyal B.M., Parmar P., Zaidi N.W., Aggarwal R.	Molecular Programming of Drought-Challenged <i>Trichoderma harzianum</i>-Bioprimed Rice (<i>Oryza sativa</i> L.).	Front Microbiol	12	655165	2021		
49559	33553958	Niranjan V., Uttarkar A., Dadi S., Dawane A., Vargheese A., H G JK., Makarla U., Ramu V.S.	Stress-Induced Detoxification Enzymes in Rice Have Broad Substrate Affinity.	ACS Omega	6(4)	3399-3410	2021		
49560	33389443	Lv Y., Xu J., Liu X.	A process-based coupled model of stomatal conductance-photosynthesis-transpiration during leaf ontogeny for water-saving irrigated rice.	Photosyn. Res.	147(2)	145-160	2021		
49561	33387175	Zhu X., Zhang S., Chen Y., Mou C., Huang Y., Liu X., Ji J., Yu J., Hao Q., Yang C., Cai M., Nguyen T., Song W., Wang P., Dong H., Liu S., Jiang L., Wan J.	Decreased grain size1, a C3HC4-type RING protein, influences grain size.in rice (Oryza sativa L.).	Plant Mol. Biol.	105(4-5)	405-417	2021	BZR1,LE	OsBZR1, Os BZR1, OsBES1-6, BES1-6,OsRHC1, RHC1, OsLE, TT3.1, OsTT3.1,  OsRING133, RING133, DGS1, OsDGS1
49562	33406626	Mapodzeke J.M., Adil M.F., Wei D., Joan H.I., Ouyang Y., Shamsi I.H.	Modulation of Key Physio-Biochemical and Ultrastructural Attributes after Synergistic Application of Zinc and Silicon on Rice under Cadmium Stress.	Plants (Basel)	10(1)		2021		
49563	33719290	Biswas P.S., Swamy B.P.M., Kader M.A., Hossain M.A., Boncodin R., Samia M., Hassan M.L., Wazuddin M., MacKenzie D., Reinke R.	Development and Field Evaluation of Near-Isogenic Lines of GR2-EBRRI dhan29 Golden Rice.	Front Plant Sci	12	619739	2021		
49564	33507446	Zhou R., Sanz-Jimenez P., Zhu X.T., Feng J.W., Shao L., Song J.M., Chen L.L.	Analysis of Rice Transcriptome Reveals the lncRNA/CircRNA Regulation in Tissue Development.	Rice (N Y)	14(1)	14	2021		
49565	33889173	Shen C., Chen K., Cui Y., Chen J., Mi X., Zhu S., Zhu Y., Ali J., Ye G., Li Z., Xu J.	QTL Mapping and Favorable Allele Mining of Nitrogen Deficiency Tolerance Using an Interconnected Breeding Population in Rice.	Front Genet	12	616428	2021		
49566	33482327	Verma R.K., Chetia S.K., Dey P.C., Rahman A., Saikia S., Sharma V., Sharma H., Sen P., Modi M.K.	Genome-wide association studies for agronomical traits in winter rice accessions of Assam.	Genomics	113(3)	1037-1047	2021		
49567	33498523	Hori K., Saisho D., Nagata K., Nonoue Y., Uehara-Yamaguchi Y., Kanatani A., Shu K., Hirayama T., Yonemaru J.I., Fukuoka S., Mochida K.	Genetic Elucidation for Response of flowering time to Ambient Temperatures in Asian Rice Cultivars.	Int J Mol Sci	22(3)		2021		
49568	33627887	Norton G.J., Travis A., Ruang-Areerate P., Nicol G.W., Adeosun A.A., Hossain M., Islam M.R., Douglas A., Price A.H.	Genetic loci regulating cadmium content in rice grains.	Euphytica	217(3)	35	2021		
49569	33432689	Guo F., Endo M., Yamaguchi T., Uchino A., Sunohara Y., Matsumoto H., Iwakami S.	Investigation of clomazone-tolerance mechanism in a long-grain cultivar of rice.	Pest Manag. Sci.	77(5)	2454-2461	2021		
49570	33438317	Yadav S., Sandhu N., Dixit S., Singh V.K., Catolos M., Mazumder R.R., Rahman M.A., Kumar A.	Genomics-assisted breeding for successful development of multiple-stress-tolerant, climate-smart rice for southern and southeastern Asia.	Plant Genome	14(1)	e20074	2021		
49571	33959140	Li X., Pan L., Bi D., Tian X., Li L., Xu Z., Wang L., Zou X., Gao X., Yang H., Qu H., Zhao X., Yuan Z., He H., Qu S.	Generation of Marker-Free Transgenic Rice Resistant to Rice blast disease Using <i>Ac/Ds</i> Transposon-Mediated Transgene Reintegration System.	Front Plant Sci	12	644437	2021		
49572	33515498	Gajbar T.D., Kamble M., Adhikari S., Konappa N., Satapute P., Jogaiah S.	Gamma-irradiated fenugreek extracts mediates resistance to rice blast disease through modulating histochemical and biochemical changes.	Anal. Biochem.	618	114121	2021		
49573	33542727	Yan H., Sun H., Jia X., Lv C., Li J., Zhao Q.	Corrigendum: Phenotypic, Transcriptomic, and Metabolomic Signatures of Root-Specifically Overexpressed <i>OsCKX2</i> in Rice.	Front Plant Sci	11	641990	2020		
49574	33444365	Lee C., Hong W.J., Jung K.H., Hong H.C., Kim D.Y., Ok H.C., Choi M.S., Park S.K., Kim J., Koh H.J.	Arachis hypogaea resveratrol synthase 3 alters the expression pattern of UDP-glycosyltransferase genes in developing rice seeds.	PLoS ONE	16(1)	e0245446	2021		
49575	33436682	Awoyale A.A., Lokhat D.	Experimental determination of the effects of pretreatment on selected Nigerian lignocellulosic biomass in bioethanol production.	Sci Rep	11(1)	557	2021		
49576	33504880	Pathak R.R., Mandal V.K., Jangam A.P., Sharma N., Madan B., Jaiswal D.K., Raghuram N.	Heterotrimeric G-protein alpha subunit (RGA1) regulates tiller development, yield, cell wall, nitrogen response and biotic stress in rice.	Sci Rep	11(1)	2323	2021		
49577	33717027	Swain H., Adak T., Mukherjee A.K., Sarangi S., Samal P., Khandual A., Jena R., Bhattacharyya P., Naik S.K., Mehetre S.T., Baite M.S., Kumar M S., Zaidi N.W.	Seed Biopriming With <i>Trichoderma</i> Strains Isolated From Tree Bark Improves Plant Growth, Antioxidative Defense System in Rice and Enhance Straw Degradation Capacity.	Front Microbiol	12	633881	2021		
49578	33519878	Xie Z., Wang J., Wang W., Wang Y., Xu J., Li Z., Zhao X., Fu B.	Integrated Analysis of the Transcriptome and Metabolome Revealed the Molecular Mechanisms Underlying the Enhanced salt tolerance of Rice Due to the Application of Exogenous Melatonin.	Front Plant Sci	11	618680	2020		
49579	33453638	Imran M., Hussain S., Rana M.S., Saleem M.H., Rasul F., Ali K.H., Potcho M.P., Pan S., Duan M., Tang X.	Molybdenum improves 2-acetyl-1-pyrroline, grain quality traits and yield attributes in fragrant rice through efficient nitrogen assimilation under cadmium toxicity.	Ecotoxicol. Environ. Saf.	211	111911	2021		
49580	33507100	Wang L., Ge S.L., Zhao K., Shiwen H.	First report of Fusarium incarnatum causing spikelet rot on rice in China.	Plant Dis.			2021		
49581	33357540	Kalaivani K., Maruthi-Kalaiselvi M., Senthil-Nathan S.	Seed treatment and foliar application of methyl salicylate (MeSA) as a defense mechanism in rice plants against the pathogenic bacterium, Xanthomonas oryzae pv. oryzae.	Pestic Biochem Physiol	171	104718	2021		
49582	33490097	Peng Y., Mao B., Zhang C., Shao Y., Wu T., Hu L., Hu Y., Tang L., Li Y., Zhao B., Tang W., Xiao Y.	Correlations Between Parental Lines and <i>Indica</i> Hybrid Rice in Terms of Eating Quality Traits.	Front Nutr	7	583997	2020		
49583	33401742	Kim E.G., Yun S., Park J.R., Kim K.M.	Identification of <i>F3H</i>, Major Secondary Metabolite-Related Gene That Confers Resistance against Whitebacked Planthopper through QTL Mapping in Rice.	Plants (Basel)	10(1)		2021		
49584	33643344	Fu J., Liu G., Liu B.	Foreign Cry1Ab/c Delays Flowering in Insect-Resistant Transgenic Rice via Interaction With Hd3a Florigen.	Front Plant Sci	12	608721	2021		
49585	33510769	Verma A., Prakash G., Ranjan R., Tyagi A.K., Agarwal P.	Silencing of an Ubiquitin Ligase Increases grain width and Weight in <i>indica</i> Rice.	Front Genet	11	600378	2020		
49586	33777532	Naithani S., Dikeman D., Garg P., Al-Bader N., Jaiswal P.	Beyond gene ontology (GO): using biocuration approach to improve the gene nomenclature and functional annotation of rice S-domain kinase subfamily.	PeerJ	9	e11052	2021	SDRLK18,SDRLK14,SDK8,SDRLK6,SDRLK4,MAK1,SDRLK29,GNK2RLK1,LSK1,NRFG6,SDRLK11,GNK2RLK5,RLCK131,SDRLK32,RLCK136,SDRLK22,SDRLK19,SDRLP7,SDRLK2,SDRLK5,SDRLK52,SDRLK60,SDRLK61,SDRLK72,RLCK248,RLCK179,_,_,_,SDRLK15,RLCK209,SDRLP12,RLCK349,SDRLK1,SDRLK3,SDRLK8,SDRLK10,SDRLK12,SDRLK13,SDRLK16,SDRLK17,SDS2,SDRLK21,SDRLK27,RLCK233,RLCK198,SDRLK53,MAK11,SDRLK51,SIK2,SDRLK43,SDRLK70,SDRLP1,RLCK168,GNK2RLK7,SDRLK9,SDRLP2,RLCK43,MAK7,RLCK36,MAK12,MAK2,SDRLK7,RLCK165,SDRLP4,SDRLK28,ESG1,SDK12,SDRLK54,SDRLK25,SDRLK69,SDRLP8,SDRLK63,SDK11,PWL1,GNK2RLK6,SDRLK44,MAK5,GNK2RLK4,SDRLK65,RLCK206,SDRLK39,SDRLK31,SDRLK66,SDRLK26,LECRK2,SDRLP6,MAK9,SDRLK68,SDRLK36,MAK8,SDRLK45,SDRLK50,SDRLK40,RLCK51,SDRLK35,GNK2RLK8,SDRLK56,GNK2RLK9,RLCK37,RLCK326,SDRLK47,RLCK215,SDRLK41,RLCK166,GNK2RLK3,SDRLK55,SDRLP11,ECK1,SDRLK24,SDRLK62,MAK6,SDRLK49,MAK10,RLCK251,SDRLK42,PID2,SDRLK20,RLCK350,MAK4,SDRLK30,SDRLK48,MAK3,RLCK180,RLCK135,SDRLK64,SDK10,SDRLK67,RLCK360,RLCK164,SDRLK34,RLCK162,RLCK138,SDRLK71,BPH15,RLCK310,SDRLK57,SDK1,SDRLK33,SDRLK58,SDRLK59,RLCK163,RLCK214	SDRLK-18, OsSDRLK-18, OsSDRLK18,SDRLK-14, OsSDRLK-14, OsSDRLK14,OsSDK8,SDRLK-6, OsSDRLK-6, OsSDRLK6,SDRLK-4, OsSDRLK-4, OsSDRLK4,OsMAK1,SRK, SDRLK-29, OsSDRLK-29, OsSDRLK29,Gnk2RLK-1, OsGnk2RLK-1, OsGNK2RLK1,OsLSK1, SDRLK-LSK1, OsSDRLK-LSK1,OsNRFG6, SDRLK-38, OsSDRLK-38, SDRLK38, OsSDRLK38,SDRLK-11, OsSDRLK-11, OsSDRLK11,Gnk2RLK-5, OsGnk2RLK-5, OsGNK2RLK5,OsRLCK131, SDRLK-23, OsSDRLK-23, SDRLK23, OsSDRLK23,SDRLK-32, OsSDRLK-32, OsSDRLK32,OsRLCK136, OsLecRK4, LecRK4, SDRLK-LecRK4, OsSDRLK-LecRK4,SDRLK-22, OsSDRLK-22, OsSDRLK22,SDRLK-19, OsSDRLK-19, OsSDRLK19,SDRLP-7, OsSDRLP-7, OsSDRLP7,SDRLK-2, OsSDRLK-2, OsSDRLK2,SDRLK-5, OsSDRLK-5, OsSDRLK5,YK18, SDRLK-52, OsSDRLK-52, OsSDRLK52,SDRLK-60, OsSDRLK-60, OsSDRLK60,SDRLK-61, OsSDRLK-61, OsSDRLK61,SDRLK-72, OsSDRLK-72, OsSDRLK72,OsRLCK248, SDRLP-5, OsSDRLP-5, SDRLP5, OsSDRLP5,OsRLCK179, SDRLP-3, OsSDRLP-3, SDRLP3, OsSDRLP3,,,,SDRLK-15, OsSDRLK-15, OsSDRLK15,OsRLCK209, SDRLP-10, OsSDRLP-10, SDRLP10, OsSDRLP10,SDRLP-12, OsSDRLP-12, OsSDRLP12,OsRLCK349,SDRLK-1, OsSDRLK-1, OsSDRLK1,SDRLK-3, OsSDRLK-3, OsSDRLK3,SDRLK-8, OsSDRLK-8, OsSDRLK8,SDRLK-10, OsSDRLK-10, OsSDRLK10,SDRLK-12, OsSDRLK-12, OsSDRLK12,SDRLK-13, OsSDRLK-13, OsSDRLK13,SDRLK-16, OsSDRLK-16, OsSDRLK16,SDRLK-17, OsSDRLK-17, OsSDRLK17,OsSDS2, SDRLK-SDS2, OsSDRLK-SDS2,YK28, SDRLK-21, OsSDRLK-21, OsSDRLK21,SDRLK-27, OsSDRLK-27, OsSDRLK27,OsRLCK233,OsRLCK198, SDRLK-37, OsSDRLK-37, SDRLK37, OsSDRLK37,SDRLK-53, OsSDRLK-53, OsSDRLK53,OsMAK11,SDRLK-51, OsSDRLK-51, OsSDRLK51,OsSIK2, YK14, SDRLK-SIK2, OsSDRLK-SIK2,SDRLK-43, OsSDRLK-43, OsSDRLK43,SDRLK-70, OsSDRLK-70, OsSDRLK70,SDRLP-1, OsSDRLP-1, OsSDRLP1,OsRLCK168,Gnk2RLK-7, OsGnk2RLK-7, OsGNK2RLK7,SDRLK-9, OsSDRLK-9, OsSDRLK9,SDRLP-2, OsSDRLP-2, OsSDRLP2,OsRLCK43, SDK4, OsSDK4,OsMAK7,OsRLCK36, Gnk2RLK-2, OsGnk2RLK-2,OsMAK12,OsMAK2,SDRLK-7, OsSDRLK-7, OsSDRLK7,OsRLCK165, SDK9, OsSDK9,SDRLP-4, OsSDRLP-4, OsSDRLP4,SDRLK-28, OsSDRLK-28, OsSDRLK28,OsESG1, SDRLK-ESG1, OsSDRLK-ESG1,OsSDK12,SDRLK-54, OsSDRLK-54, OsSDRLK54,SDRLK-25, OsSDRLK-25, OsSDRLK25,SDRLK-69, OsSDRLK-69, OsSDRLK69,SDRLP-8, OsSDRLP-8, OsSDRLP8,SDRLK-63, OsSDRLK-63, OsSDRLK63,OsSDK11,RLCK121, OsRLCK121, SDK13, OsSDK13, OsPWL1,Gnk2RLK-6, OsGnk2RLK-6, OsGNK2RLK6,SDRLK-44, OsSDRLK-44, OsSDRLK44,OsMAK5,Gnk2RLK-4, OsGnk2RLK-4, OsGNK2RLK4,SDRLK-65, OsSDRLK-65, OsSDRLK65,OsRLCK206,SDRLK-39, OsSDRLK-39, OsSDRLK39,SDRLK-31, OsSDRLK-31, OsSDRLK31,SDRLK-66, OsSDRLK-66, OsSDRLK66,SDRLK-26, OsSDRLK-26, OsSDRLK26,OsLecRK2, LecRK2, SDRLK-LecRK2, OsSDRLK-LecRK2,SDRLP-6, OsSDRLP-6, OsSDRLP6,OsMAK9,SDRLK-68, OsSDRLK-68, OsSDRLK68,SDRLK-36, OsSDRLK-36, OsSDRLK36,OsMAK8,SDRLK-45, OsSDRLK-45, OsSDRLK45,SDRLK-50, OsSDRLK-50, OsSDRLK50,SDRLK-40, OsSDRLK-40, OsSDRLK40,OsRLCK51, OsPSRK2, PSRK2, SDRLK-PSRK2, OsSDRLK-PSRK2,SDRLK-35, OsSDRLK-35, OsSDRLK35,Gnk2RLK-8, OsGnk2RLK-8,OsLecRK paralog, SDRLK-56, OsSDRLK-56, OsSDRLK56,OsEnS-147, Gnk2RLK-9, OsGnk2RLK-9,OsRLCK37, Gnk2-K1, OsGnk2-K1,OsRLCK326,SDRLK-47, OsSDRLK-47, OsSDRLK47,OsRLCK215,SDRLK-41, OsSDRLK-41, OsSDRLK41,OsRLCK166,Gnk2RLK-3, OsGnk2RLK-3, OsGNK2RLK3,SDRLK-55, OsSDRLK-55, OsSDRLK55,SDRLP-11, OsSDRLP-11, OsSDRLP11,OsECK1,SDRLK-24, OsSDRLK-24, OsSDRLK24,SDRLK-62, OsSDRLK-62, OsSDRLK62,OsMAK6,SDRLK-49, OsSDRLK-49, OsSDRLK49,OsMAK10,OsRLCK251,SDRLK-42, OsSDRLK-42, OsSDRLK42,Pi-d2, Pi-d(t)2, PiD2(t), Pid2, PI-D2, Pi-d2(t), SDRLK-PID2, OsSDRLK-PID2,SDRLK-20, OsSDRLK-20, OsSDRLK20,OsRLCK350,OsMAK4,SDRLK-30, OsSDRLK-30, OsSDRLK30,SDRLK-48, OsSDRLK-48, OsSDRLK48,OsMAK3,OsRLCK180, SDRLP-9, OsSDRLP-9, SDRLP9, OsSDRLP9,OsRLCK135, OsLecRK3, LecRK3, SDRLK-LecRK3, OsSDRLK-LecRK3,OsLecRK paralog, SDRLK-64, OsSDRLK-64, OsSDRLK64,OsSDK10,SDRLK-67, OsSDRLK-67, OsSDRLK67,OsRLCK360, SDK3, OsSDK3,OsRLCK164, SDK14, OsSDK14,SDRLK-34, OsSDRLK-34, OsSDRLK34,OsRLCK162, SDK6, OsSDK6,OsRLCK138, SDK5, OsSDK5,SDRLK-71, OsSDRLK-71, OsSDRLK71, OsPLIM2b, PLIM2b,RLCK134, OsRLCK134, OsLecRK1, LecRK1, SDRLK-LecRK1, OsSDRLK-LecRK1, OslecRK, lecRK, Bph15, OsBph15, Bph15 (Qbp2), Qbp2, qBPH-4,OsRLCK310, LecRK, OsLecRK, SDK2, OsSDK2,SDRLK-57, OsSDRLK-57, OsSDRLK57,OsSDK1,SDRLK-33, OsSDRLK-33, OsSDRLK33,SDRLK-58, OsSDRLK-58, OsSDRLK58,SDRLK-59, OsSDRLK-59, OsSDRLK59,OsRLCK163, SDK7, OsSDK7,OsRLCK214
49587	33411361	Fu X., Liu C., Li Y., Liao S., Cheng H., Tu Y., Zhu X., Chen K., He Y., Wang G.	The coordination of OsbZIP72 and OsMYBS2 with reverse roles regulates the transcription of OsPsbS1 in rice.	New Phytol.	229(1)	370-387	2021		
49588	33394228	Prasannakumar M.K., Parivallal B.P., Manjunatha C., Pramesh D., Narayan K.S., Venkatesh G., Banakar S.N., Mahesh H.B., Vemanna R.S., Rangaswamy K.T.	Rapid genotyping of bacterial leaf blight resistant genes of rice using loop-mediated isothermal amplification assay.	Mol. Biol. Rep.	48(1)	467-474	2021		
49589	33708231	Jang S., Shim S., Lee Y.K., Lee D., Koh H.J.	Major QTLs, <i>qARO1</i> and <i>qARO9</i>, Additively Regulate Adaxial leaf rolling in Rice.	Front Plant Sci	12	626523	2021		
49590	33691965	Wang R., Ren Y., Yan H., Teng X., Zhu X., Wang Y., Zhang X., Guo X., Lin Q., Cheng Z., Lei C., Wang J., Jiang L., Wang Y., Wan J.	ENLARGED STARCH GRAIN1 affects amyloplast development and starch biosynthesis in rice endosperm.	Plant Sci.	305	110831	2021	ESG1	ABCI10, OsABCI10, OsABCI10_1, OsABCI10_2, OsESG1
49591	33435585	Betti C., Della Rovere F., Piacentini D., Fattorini L., Falasca G., Altamura M.M.	Jasmonates, Ethylene and Brassinosteroids Control Adventitious and Lateral Rooting as Stress Avoidance Responses to Heavy Metals and Metalloids.	Biomolecules	11(1)		2021		
49592	33540331	Sun H., Xu H., Li B., Shang Y., Wei M., Zhang S., Zhao C., Qin R., Cui F., Wu Y.	The brassinosteroid biosynthesis gene, ZmD11, increases seed size and quality in rice and maize.	Plant Physiol. Biochem.	160	281-293	2021		
49593	33448624	Strobbe S., Verstraete J., Stove C., Van Der Straeten D.	Metabolic engineering of rice endosperm towards higher vitamin B1 accumulation.	Plant Biotechnol. J.			2021		
49594	33882798	Fu J., Liu B., Liu L., Fang Z.	Fitness of Insect-resistant transgenic rice T1C-19 under four growing conditions combining land use and weed competition.	GM Crops Food	12(1)	328-341	2021		
49595	33493931	Deng X., Zheng W., Jin C., Zhan Q., Bai L.	Novel phenylpyrimidine derivatives containing a hydrazone moiety protect rice seedlings from injury by metolachlor.	Bioorg. Chem.	108	104645	2021		
49596	33423160	Rao J., Wang X., Cai Z., Fan Y., Yang J.	Genetic Analysis of S5-Interacting Genes Regulating hybrid sterility in Rice.	Rice (N Y)	14(1)	11	2021		
49597	33952754	Himeno S., Fujishiro H.	[Roles of Zinc Transporters That Control the Essentiality and Toxicity of Manganese and Cadmium].	Yakugaku Zasshi	141(5)	695-703	2021		
49598	33398157	Matsumoto H., Fan X., Wang Y., Kusstatscher P., Duan J., Wu S., Chen S., Qiao K., Wang Y., Ma B., Zhu G., Hashidoko Y., Berg G., Cernava T., Wang M.	Bacterial seed endophyte shapes disease resistance in rice.	Nat Plants	7(1)	60-72	2021		
49599	33679823	Suman K., Neeraja C.N., Madhubabu P., Rathod S., Bej S., Jadhav K.P., Kumar J.A., Chaitanya U., Pawar S.C., Rani S.H., Subbarao L.V., Voleti S.R.	Identification of Promising RILs for High Grain Zinc Through Genotype ~ Environment Analysis and Stable Grain Zinc QTL Using SSRs and SNPs in Rice (<i>Oryza sativa</i> L.).	Front Plant Sci	12	587482	2021		
49600	33417037	Wang Y., Duan G., Li C., Ma X., Yang J.	Application of jasmonic acid at the stage of visible brown necrotic spots in Magnaporthe oryzae infection as a novel and environment-friendly control strategy for rice blast disease.	Protoplasma			2021		
49601	33574828	Sakata M., Takano-Kai N., Miyazaki Y., Kanamori H., Wu J., Matsumoto T., Doi K., Yasui H., Yoshimura A., Yamagata Y.	Domain Unknown Function DUF1668-Containing Genes in Multiple Lineages Are Responsible for F1 pollen sterility in Rice.	Front Plant Sci	11	632420	2020	S22A_J3,S22A_J1,S22A_J2,S22B	S22(t), S22A_j3,S22(t), S22A_j1,S22(t), S22A_j2,S22(t), S22B
49602	33462253	Halawa M., Cortleven A., Schm?lling T., Heyl A.	Characterization of CHARK, an unusual cytokinin receptor of rice.	Sci Rep	11(1)	1722	2021		
49603	33506165	Johnson A., Mcassey E., Diaz S., Reagin J., Redd P.S., Parrilla D.R., Nguyen H., Stec A., McDaniel L.A.L., Clemente T.E., Stupar R.M., Parrott W.A., Hancock C.N.	Development of <i>mPing</i>-based activation tags for crop insertional mutagenesis.	Plant Direct	5(1)	e00300	2021		
49604	33452717	Li H., Chen H., Deng S., Cai H., Shi L., Xu F., Wang C.	Inhibition of nitric oxide production under alkaline conditions regulates iron homeostasis in rice.	Physiol Plant			2021		
49605	33402203	Yang X., You C., Wang X., Gao L., Mo B., Liu L., Chen X.	Widespread occurrence of microRNA-mediated target cleavage on membrane-bound polysomes.	Genome Biol.	22(1)	15	2021		
49606	33519839	Wang Y., Zhang H., Li Q., Jin J., Chen H., Zou Y., Huang X., Ding Y.	Genome-Wide Identification of lncRNAs Involved in Fertility Transition in the Photo-Thermosensitive Genic Male Sterile Rice Line Wuxiang S.	Front Plant Sci	11	580050	2020		
49607	33372497	Shi D.L., Wang X.L., Liu A.K., Hou Z.F., Liang G.T.	[Response of Microbial Biomass Carbon and Nitrogen and Rice Quality in a Yellow Soil Paddy Field to Biochar Combined with Nitrogen Fertilizer].	Huan Jing Ke Xue	42(1)	443-449	2021		
49608	33237299	Valentin G., Abdel T., Ga?tan D., Jean-Fran?ois D., Matthieu C., Mathieu R.	GreenPhylDB v5: a comparative pangenomic database for plant genomes.	Nucleic Acids Res.	49(D1)	D1464-D1471	2021		
49609	33968097	Munguambe N.E., Inoue S., Demeter Z., Yamagata Y., Yasui H., Zheng S.H., Fujita D.	Substitution Mapping of a Locus Responsible for Hybrid Breakdown in Populations Derived From Interspecific Introgression Line.	Front Plant Sci	12	633247	2021		
49610	33569081	Liu H., Long S.X., Pinson S.R.M., Tang Z., Guerinot M.L., Salt D.E., Zhao F.J., Huang X.Y.	Univariate and Multivariate QTL Analyses Reveal Covariance Among Mineral Elements in the Rice Ionome.	Front Genet	12	638555	2021		
49611	33416862	Liu L., Zhang G., He S., Hu X.	TSPTFBS: a docker image for Trans-Species Prediction of Transcription Factor Binding Sites in Plants.	Bioinformatics			2021		
49612	33513481	Das D., Sen P., Purkayastha S., Saha A.K., Roy A., Rai P., Sen S., Saha S., Senapati B.K., Biswas T., Bhattacharyya S.	A perfect PCR based co-dominant marker for low grain-arsenic accumulation genotyping in rice.	Ecotoxicol. Environ. Saf.	212	111960	2021		
49613	33422012	Zeng P., Zhu P., Qian L., Qian X., Mi Y., Lin Z., Dong S., Aronsson H., Zhang H., Cheng J.	Identification and fine mapping of qGR6.2, a novel locus controlling rice seed germination under salt stress.	BMC Plant Biol.	21(1)	36	2021		
49614	33488529	Taj Z., Challabathula D.	Protection of Photosynthesis by Halotolerant <i>Staphylococcus sciuri</i> ET101 in Tomato (<i>Lycoperiscon esculentum</i>) and Rice (<i>Oryza sativa</i>) Plants During Salinity Stress: Possible Interplay Between Carboxylation and Oxygenation in Stress Mitigation.	Front Microbiol	11	547750	2020		
49615	33415511	Hori K., Suzuki K., Ishikawa H., Nonoue Y., Nagata K., Fukuoka S., Tanaka J.	Genomic Regions Involved in Differences in Eating and Cooking Quality Other than Wx and Alk Genes between indica and japonica Rice Cultivars.	Rice (N Y)	14(1)	8	2021		
49616	33525623	Yoon H., Shim Y., Yoo S.C., Kang K., Paek N.C.	The Rice CHD3/Mi-2 Chromatin Remodeling Factor Rolled Fine Striped Promotes Flowering Independent of Photoperiod.	Int J Mol Sci	22(3)		2021	RFS,GHD7,EF1,HD3A,RFT1	rfs, cul7, OsRFS, OsCHR729, CHR729, CHR4, OsCHR4, CRL6, OsCRL, OsCHR4/CHR729, PKR1, OsPHD32, PHD32,Ghd2, Ghd7, OsGhd7, OsCCT26, OsCMF8, OsI, Ghd7/Hd4, Hd4, EH7-1/Hd4, Ghd7-0a, EH7-1, EH7/Ghd7, EH7, OsEH7, GLW7.1, OsGLW7.1,Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,FT-L 3, OsFTL3, FTL3, FT-L3, RFT, OsRFT1
49617	33968116	Wang R., Zhao H., Guo H., Zong J., Li J., Wang H., Liu J., Wang J.	Use of Transcriptomic Analyses to Elucidate the Mechanism Governing nodal root Development in <i>Eremochloa ophiuroides</i> (Munro) Hack.	Front Plant Sci	12	659830	2021		
49618	33481906	Du Z., Deng S., Wu Z., Wang C.	Genome-wide analysis of haloacid dehalogenase genes reveals their function in phosphate starvation responses in rice.	PLoS ONE	16(1)	e0245600	2021		
49619	33432466	Lin Y.L., Wu D.H., Wu C.C., Huang Y.F.	Explore the genetics of weedy traits using rice 3K database.	Botanical Studies	62(1)	2	2021		
49620	33936156	Chen X., Jiang W., Tong T., Chen G., Zeng F., Jang S., Gao W., Li Z., Mak M., Deng F., Chen Z.H.	Molecular Interaction and Evolution of Jasmonate Signaling With Transport and Detoxification of Heavy Metals and Metalloids in Plants.	Front Plant Sci	12	665842	2021		
49621	33796132	Mohanty B.	Promoter Architecture and Transcriptional Regulation of Genes Upregulated in Germination and Coleoptile Elongation of Diverse Rice Genotypes Tolerant to Submergence.	Front Genet	12	639654	2021	HOX28,DLN31,DREB1F,ERF99,HOX12,HOX13,HSFB2C,NAC15,WRKY13,ONAC2,PIL14,DREB1C,_,RAI1,ERF91,BHLH44,IAA31,NAC3,_,_,C3H23,PL,C3H33,NAC17,RFPV1,_,MYB11,HOX2,ERF133,WRKY8,_,HSFC2A,_,2R_MYB6 ,BHLH185,HSFB4A,_,BHLH1,BZIP79,ERF32,DCA1,AP2/EREBP77,BBX6,BSRD1,NAC6,DREB1G,COG1,LIP19,WRKY7,AP2/EREBP127,ZFP182,HSFB1,OSKN2,SAP1,_,HOX6	Oshox28, OsHox28, OsHDZ18, OsHDZIP18, HDZ18, HDZIP18,R2R3-MYB, OsDLN31, MYB3, OsMYB22, MYB22, Os2R_MYB18, 2R_MYB18 ,OsERF#027, OsERF027, OsERF27, ERF27, AP2/EREBP#081, AP2/EREBP81, OsDREB1F,OsERF#099, OsERF099, OsERF99, AP2/EREBP#080, AP2/EREBP80, OsEREBP2, EREBP2,Oshox12, OsHox12,Oshox13, OsHox13, OsHDZ11, OsHDZIP11, HDZ11, HDZIP11,HSfB2c, OsHsfB2c, OsHsf-24, HSF24, OsHSF24 ,OsNAC15, ONAC015, ONAC15, ONAC069, ONAC69,OsWRKY13,SNAC1, snac1, OsNAC9, ONAC002, ONAC2, ONAC033, ONAC33, ONAC043, ONAC43, ONAC044, ONAC44, OsNAC19, NAC19, SNAC1/ONAC002, OsSNAC1, OsNAC9, OsNAC1,OsPIL14, OsbHLH104, bHLH104, OsPIF14, PIF14, OsPIF14alpha, OsPIF14beta,OsDREB1C, CBF1, ERF26, OsERF026, OsERF#026, OsERF26, AP2/EREBP#098, AP2/EREBP98, OsCBF2, CBF2,,  OsRING389, RING389,OsRAI1, OsbHLH003, bHLH003, bHLH3,OsERF#091, OsERF091, OsERF91, AP59, OsAP59, AP2/EREBP#147, AP2/EREBP147, OsBIERF3, BIERF3,OsbHLH044, bHLH044, bHLH44, OsbHLH96, bHLH96, bHLH096,OsIAA3, IAA3, OsIAA31, OsIAA30, IAA30,OsNAC3, NAC67, ONAC067, OnNAC3*, OsNAC3/ONAC067, DLN180, OsDLN180,,,OsC3H23,OsMYB55, OsMYB-2, MYB55, MYB-2, OsPL, Os2R_MYB60, 2R_MYB60,OsC3H33, OsTZF5, TZF5, OsCCCH-Zn-5, CCCH-Zn-5,ONAC017, ONAC17, ONAC030, ONAC30, OsNAC111,OsRFPV-1,  OsRING102, RING102,,  OsRING277, RING277,OsMyb11, Myb11, OsMYB60, MYB60, Os2R_MYB93, 2R_MYB93 ,Oshox2, OsHox2, OsHDZ19, OsHDZIP19, HDZ19, HDZIP19,OsERF#133, OsERF133, AP2/EREBP#065, AP2/EREBP65, OsDREB1H, DREB1H, OsDREB1m, DREB1m,OsWRKY8,CaMBP,HSfC2a, OsHsfC2a, OsHsf-05, HSF05, OsHSF5, HSF5,R2R3-MYB, MYB48/59, OsMYB48/59, Os2R_MYB98, 2R_MYB98,OsMYB, Os2R_MYB6 ,OsbHLH185, bHLH185,HSfB4a, OsHsfB4a, OsHsf-20, HSF20, OsHSF20,R2R3-MYB, OsMYB55/61-L,  MYB55/61-L,  OsMYB55,  OsMYB61-L, MYB55,  MYB61-L, OsMYB61L, MYB61L, OsMYB61b, MYB61b, Os2R_MYB53, 2R_MYB53, OsMYB2P-1, MYB2P-1,OsbHLH1, bHLH1, OsbHLH062, bHLH062, bHLH62 ,OsbZIP79,OsERF#032, OsERF032, OsERF32, AP2/EREBP#021, AP2/EREBP21, OsDREB2B,OsDCA1, DST1, OsDST1,  OsRING161, RING161,AP2/EREBP#077, OsRAV1, RAV1, OsRAV8, RAV8,OsBBX6,ZFP36, OsZFP36, OsBSRD1, Bsr-d1, BSR-D1, DLN91, OsDLN91,OsNAC6, ONAC048, NAC48, SNAC2, SNAC2/OsNAC6, OsNAC6/ONAC048, OsSNAC2, SNAC-2, OsSNAC-2, OsNAC2,OsDREB1G, OsERF025, OsERF#025, OsERF25, ERF25, AP2/EREBP#138, AP2/EREBP138, OsDREB1I,OsMADS17, MADS17, NMADS3, RMADS213, nmads3,Lip19, lip19, OsLIP9, OsbZIP38, bZIP38,OsWRKY7,AP2/EREBP#127, OsRAV11, RAV11, OsRAV1, RAV1,OsZFP182,  ZOS3-21, OsZOS3-21, ZOS3, OsZOS3,HSfB1, OsHsfB1, OsHsf-23, HSF23, OsHsf23, OsHSF23, TBF1 ,OsKn2, OsH71, HOS9, OSH71, OSH71/Oskn2,Osi-SAP1, ISAP1, OsiSAP1, OSISAP1, OsSAP1,WZF1, OsWZF1, DLN99, OsDLN99, OsZFP1, ZFP1,Oshox6, OsHox6, OsHDZ33, OsHDZIP33, HDZ33, HDZIP33
49622	33420305	Wang D., Sun W., Yuan Z., Sun Q., Fan K., Zhang C., Yu S.	Identification of a novel QTL and candidate gene associated with grain size using chromosome segment substitution lines in rice.	Sci Rep	11(1)	189	2021		
49623	33498963	Mohd Ikmal A., Noraziyah A.A.S., Wickneswari R.	Incorporating Drought and Submergence Tolerance QTL in Rice (<i>Oryza sativa</i> L.)-The Effects under Reproductive Stage Drought and Vegetative Stage Submergence Stresses.	Plants (Basel)	10(2)		2021		
49624	33499293	Elshayb O.M., Farroh K.Y., Amin H.E., Atta A.M.	Green Synthesis of Zinc Oxide Nanoparticles: Fortification for Rice grain yield and Nutrients Uptake Enhancement.	Molecules	26(3)		2021		
49625	33516199	Yu L., Guo R., Jiang Y., Ye X., Yang Z., Meng Y., Shao C.	Degradome sequencing-based identification of phasiRNAs biogenesis pathways in Oryza sativa.	BMC Genomics	22(1)	93	2021		
49626	33471329	Tra M.V.T., Yin X., Bajal I., Balahadia C.P., Quick W.P., Bandyopadhyay A.	Single Base Editing Using Cytidine Deaminase to Change grain size and seed coat Color in Rice.	Methods Mol. Biol.	2238	135-143	2021		
49627	33387174	Yang X., Wu Z., Gao J.	Effects of conserved Arg20, Glu74 and Asp77 on the structure and function of a tau class glutathione S-transferase in rice.	Plant Mol. Biol.	105(4-5)	451-462	2021		
49628	33453461	Ling Q.L., Feng Y.X., Lu C.J., Lin Y.J., Yu X.Z.	Genetic variation and gene expression of anthocyanin synthesis and transport related enzymes in Oryza sativa against thiocyanate.	Plant Physiol. Biochem.	160	18-26	2021		
49629	33444976	Ganie S.A., Wani S.H., Henry R., Hensel G.	Improving rice salt tolerance by precision breeding in a new era.	Curr. Opin. Plant Biol.	60	101996	2021		
49630	33424241	Pan Y.H., Gao L.J., Liang Y.T., Zhao Y., Liang H.F., Chen W.W., Yang X.H., Qing D.J., Gao J., Wu H., Huang J., Zhou W.Y., Huang C.C., Dai G.X., Deng G.F.	<i>OrMKK3</i> Influences Morphology and grain size in Rice.	J. Plant Biol.		1-14	2021		
49631	33707359	Priya B.N.V., Arun Pandiyan I., Reddy T.V., Vinay K., Amarnath M., Chidanand U., Hemanth V., Saiprasad G.V.S.	Identification of SNPs in crucial starch biosynthesis genes in rice.	J. Genet.	100		2021		
49632	33418890	Jan R., Asaf S., Paudel S., Lubna, Lee S., Kim K.M.	Discovery and Validation of a Novel Step Catalyzed by <i>OsF3H</i> in the Flavonoid Biosynthesis Pathway.	Biology (Basel)	10(1)		2021		
49633	33854281	Singh B.K., Ramkumar M.K., Dalal M., Singh A., Solanke A.U., Singh N.K., Sevanthi A.M.	Allele mining for a drought responsive gene <i>DRO1</i> determining root growth angle in donors of drought tolerance in rice (<i>Oryza sativa</i> L.).	Physiol Mol Biol Plants	27(3)	523-534	2021		
49634	33421144	Shi W., Ji J., Xue Z., Zhang F., Miao Y., Yang H., Tang D., Du G., Li Y., Shen Y., Cheng Z.	prd1, a homologous recombination initiation factor, is involved in spindle assembly in rice meiosis.	New Phytol.	230(2)	585-600	2021	MTOPVIB,SGO1,CENP-C,NDC80,MIS12,PRD1,PRD2,RAD21-4	OsMTOPVIB,OsSGO1,OsCENP-C,OsNDC80,OsMIS12,OsSTA121, STA121, OsPRD1,OsPRD2, OsPRD2/MPS1, OsMPS1, MPS1,OsRad21-4, REC8, OsREC8, OsRAD21-4
49635	33277993	Andr?si N., Pettk?-Szandtner A., Szabados L.	Diversity of plant heat shock factors: regulation, interactions, and functions.	J. Exp. Bot.	72(5)	1558-1575	2021		
49636	33531490	Zhang M., Wang Y., Chen X., Xu F., Ding M., Ye W., Kawai Y., Toda Y., Hayashi Y., Suzuki T., Zeng H., Xiao L., Xiao X., Xu J., Guo S., Yan F., Shen Q., Xu G., Kinoshita T., Zhu Y.	Plasma membrane H+-ATPase overexpression increases rice yield via simultaneous enhancement of nutrient uptake and photosynthesis.	Nat Commun	12(1)	735	2021		
49637	33620496	Hayashi S., Kuramata M., Abe T., Yamaguchi N., Takagi H., Tanikawa H., Iino M., Sugimoto K., Ishikawa S.	Deficiency in alcohol dehydrogenase 2 reduces arsenic in rice grains by suppressing silicate transporters.	Plant Physiol.			2021		
49638	33421243	Tian T., Ji R., Fu J., Li J., Wang L., Zhang H., Yang S., Ye W., Fang J., Zhu-Salzman K.	A salivary calcium-binding protein from Laodelphax striatellus acts as an effector that suppresses defense in rice.	Pest Manag. Sci.	77(5)	2272-2281	2021		
49639	33547682	Sun H., Guo X., Qi X., Feng F., Xie X., Zhang Y., Zhao Q.	SPL14/17 act downstream of strigolactone signalling to modulate rice root elongation in response to nitrate supply.	Plant J.			2021		
49640	33538220	Shindo M., Nagasaka S., Kashiwada S., Shimomura K., Umehara M.	Shoot has important roles in strigolactone production of rice roots under sulfur deficiency.	Plant Signal Behav	16(4)	1880738	2021		
49641	33591993	Langner T., Harant A., Gomez-Luciano LB., Shrestha R.K., Malmgren A., Latorre S.M., Burbano H.A., Win J., Kamoun S.	Genomic rearrangements generate hypervariable mini-chromosomes in host-specific isolates of the blast fungus.	PLoS Genet.	17(2)	e1009386	2021		
49642	33652695	Zeng J., Zhang T., Huangfu J., Li R., Lou Y.	Both Allene Oxide Synthases Genes Are Involved in the Biosynthesis of Herbivore-Induced Jasmonic Acid and Herbivore Resistance in Rice.	Plants (Basel)	10(3)		2021		
49643	33630174	Hu Y., Zhou X., Zhang B., Li S., Fan X., Zhao H., Zhang J., Liu H., He Q., Li Q., Ayaad M., You A., Xing Y.	OsPRR37 Alternatively Promotes heading date Through Suppressing the Expression of Ghd7 in the Japonica Variety Zhonghua 11 under Natural Long-Day Conditions.	Rice (N Y)	14(1)	20	2021		
49644	33668376	Sun Y., Xiong X., Wang Q., Zhu L., Wang L., He Y., Zeng H.	Integrated Analysis of Small RNA, Transcriptome, and Degradome Sequencing Reveals the MiR156, miR5488 and miR399 are Involved in the Regulation of male sterility in PTGMS Rice.	Int J Mol Sci	22(5)		2021		
49645	33528262	Yang L., Chen Y., Li R., Xu W., Cui J., Zhang D., Zhang X.	Universal LNA Probe-Mediated Multiplex Droplet Digital Polymerase Chain Reaction for Ultrasensitive and Accurate Quantitative Analysis of Genetically Modified Organisms.	J. Agric. Food Chem.	69(5)	1705-1713	2021		
49646	33594103	Ali L.G., Nulit R., Ibrahim M.H., Yien C.Y.S.	Efficacy of KNO3, SiO2 and SA priming for improving emergence, seedling growth and antioxidant enzymes of rice (Oryza sativa), under drought.	Sci Rep	11(1)	3864	2021		
49647	33462818	Cheng X., He Q., Tang S., Wang H., Zhang X., Lv M., Liu H., Gao Q., Zhou Y., Wang Q., Man X., Liu J., Huang R., Wang H., Chen T., Liu J.	The miR172/IDS1 signaling module confers salt tolerance through maintaining ROS homeostasis in cereal crops.	New Phytol.	230(3)	1017-1033	2021		
49648	33341945	Zhou S., Zhu S., Cui S., Hou H., Wu H., Hao B., Cai L., Xu Z., Liu L., Jiang L., Wang H., Wan J.	Transcriptional and post-transcriptional regulation of heading date in rice.	New Phytol.	230(3)	943-956	2021		
49649	33594262	Wang H., Li Y., Chern M., Zhu Y., Zhang L.L., Lu J.H., Li X.P., Dang W.Q., Ma X.C., Yang Z.R., Yao S.Z., Zhao Z.X., Fan J., Huang Y.Y., Zhang J.W., Pu M., Wang J., He M., Li W.T., Chen X.W., Wu X.J., Li S.G., Li P., Li Y., Ronald P.C., Wang W.M.	Suppression of rice miR168 improves yield, flowering time and immunity.	Nat Plants	7(2)	129-136	2021		
49650	33474769	Che J., Yamaji N., Ma J.F.	Role of a vacuolar iron transporter OsVIT2 in the distribution of iron to rice grains.	New Phytol.	230(3)	1049-1062	2021		
49651	33130882	Zhao J., Yang B., Li W., Sun S., Peng L., Feng D., Li L., Di H., He Y., Wang Z.	A genome-wide association study reveals that the glucosyltransferase OsIAGLU regulates root growth in rice.	J. Exp. Bot.	72(4)	1119-1134	2021		
49652	33546440	Marques A.C., Lidon F.C., Coelho A.R.F., Pessoa C.C., Lu?s IC., Campos P.S., Sim?es M., Almeida A.S., Pessoa M.F., Galhano C., Guerra M., Leit?o RG., Legoinha P., Ramalho J.C., Semedo J.N., Rodrigues A.P., Marques P., Silva C., Ribeiro-Barros A., Silva M.J., Silva M.M., Oliveira K., Ferreira D., Pais I.P., Reboredo F.H.	Effect of Rice Grain (<i>Oryza sativa</i> L.) Enrichment with Selenium on Foliar Leaf Gas Exchanges and Accumulation of Nutrients.	Plants (Basel)	10(2)		2021		
49653	33576433	Takahashi Y., Wada S., Noguchi K., Miyake C., Makino A., Suzuki Y.	Photochemistry of Photosystems II and I in Rice Plants Grown Under Different N Levels at Normal and High Temperature.	Plant Cell Physiol.			2021		
49654	33576018	Zhao Y., Wu L., Fu Q., Wang D., Li J., Yao B., Yu S., Jiang L., Qian J., Zhou X., Han L., Zhao S., Ma C., Zhang Y., Luo C., Dong Q., Li S., Zhang L., Jiang X., Li Y., Luo H., Li K., Yang J., Luo Q., Li L., Peng S., Huang H., Zuo Z., Liu C., Wang L., Li C., He X., Friml J., Du Y.	INDITTO2 transposon conveys auxin-mediated DRO1 transcription for rice drought avoidance.	Plant Cell Environ.			2021		
49655	33448635	Zhang W., Peng K., Cui F., Wang D., Zhao J., Zhang Y., Yu N., Wang Y., Zeng D., Wang Y., Cheng Z., Zhang K.	Cytokinin oxidase/dehydrogenase OsCKX11 coordinates source and sink relationship in rice by simultaneous regulation of leaf senescence and grain number.	Plant Biotechnol. J.	19(2)	335-350	2021		
49656	33569692	Huang X., Zhang H., Wang Q., Guo R., Wei L., Song H., Kuang W., Liao J., Huang Y., Wang Z.	Genome-wide identification and characterization of long non-coding RNAs involved in flag leaf senescence of rice.	Plant Mol. Biol.	105(6)	655-684	2021		
49657	33619741	Solis C.A., Yong M.T., Venkataraman G., Milham P., Zhou M., Shabala L., Holford P., Shabala S., Chen Z.H.	Sodium sequestration confers salinity tolerance in an ancestral wild rice.	Physiol Plant			2021		
49658	33668247	Ponce K.S., Meng L., Guo L., Leng Y., Ye G.	Advances in Sensing, Response and Regulation Mechanism of salt tolerance in Rice.	Int J Mol Sci	22(5)		2021		
49659	33200773	Chen D., Qiu Z., He L., Hou L., Li M., Zhang G., Wang X., Chen G., Hu J., Gao Z., Dong G., Ren D., Shen L., Zhang Q., Guo L., Qian Q., Zeng D., Zhu L.	The rice LRR-like1 protein YELLOW AND PREMATURE DWARF 1 is involved in leaf senescence induced by high light.	J. Exp. Bot.	72(5)	1589-1605	2021	ICL,SGR,KAT1,RCCR1,YPD1,AGA1,AMTR1	OsEnS-107, EnS-107, OsI85, I85, OsICL, Osl85, l43, Osl43, OsL85,sgr(t), sgr, OsSGR, OsSgr, SGR1, OsSGR1,OsI57, I57, OsKAT1, OsACAA1, ACAA1,OsRCCR1, OsRCCR, RCCR,OsYPD1,Osh69, h69, OsAGA1, OsRS6, RS6,Osh36, OsH36, H36, OsAMTR1
49660	33597957	Zhu F., Paul P., Hussain W., Wallman K., Dhatt B.K., Sandhu J., Irvin L., Morota G., Yu H., Walia H.	<i>SeedExtractor</i>: An Open-Source GUI for Seed Image Analysis.	Front Plant Sci	11	581546	2020		
49661	33539781	Yu H., Lin T., Meng X., Du H., Zhang J., Liu G., Chen M., Jing Y., Kou L., Li X., Gao Q., Liang Y., Liu X., Fan Z., Liang Y., Cheng Z., Chen M., Tian Z., Wang Y., Chu C., Zuo J., Wan J., Qian Q., Han B., Zuccolo A., Wing R.A., Gao C., Liang C., Li J.	A route to de novo domestication of wild allotetraploid rice.	Cell	184(5)	1156-1170.e14	2021		
49662	33775366	Hasegawa T., Lucob-Agustin N., Yasufuku K., Kojima T., Nishiuchi S., Ogawa A., Takahashi-Nosaka M., Kano-Nakata M., Inari-Ikeda M., Sato M., Tsuji H., Wainaina C.M., Yamauchi A., Inukai Y.	Mutation of OUR1/OsbZIP1, which encodes a member of the basic leucine zipper transcription factor family, promotes root development in rice through repressing auxin signaling.	Plant Sci.	306	110861	2021		
49663	33620495	Ma X., Xing F., Jia Q., Zhang Q., Hu T., Wu B., Shao L., Zhao Y., Zhang Q., Zhou D.X.	Parental variation in CHG methylation is associated with allelic-specific expression in elite hybrid rice.	Plant Physiol.			2021		
49664	33617358	Fu X., Ma L., Gui R., Ashraf U., Li Y., Yang X., Zhang J., Imran M., Tang X., Tian H., Mo Z.	Differential response of fragrant rice cultivars to salinity and hydrogen rich water in relation to growth and antioxidative defense mechanisms.	Int J Phytoremediation		1-9	2021		
49665	33189157	Samal P., Mohapatra P.K., Naik S.K., Mukherjee A.K.	Improved photosystem II and defense enzymes activity in rice (Oryza sativa) by biopriming against Xanthomonas oryzae pv. oryzae.	Funct. Plant Biol.	48(3)	298-311	2021		
49666	33562219	Zhu C.C., Wang C.X., Lu C.Y., Wang J.D., Zhou Y., Xiong M., Zhang C.Q., Liu Q.Q., Li Q.F.	Genome-Wide Identification and Expression Analysis of OsbZIP09 Target Genes in Rice Reveal Its Mechanism of Controlling Seed Germination.	Int J Mol Sci	22(4)		2021		
49667	33631807	Suganami M., Suzuki Y., Tazoe Y., Yamori W., Makino A.	Co-overproducing Rubisco and Rubisco activase enhances photosynthesis in the optimal temperature range in rice.	Plant Physiol.	185(1)	108-119	2021		
49668	33583030	Guddimalli R., Somanaboina A.K., Palle S.R., Edupuganti S., Kummari D., Palakolanu S.R., Naravula J., Gandra J., Qureshi I.A., Marka N., Polavarapu R., Kavi Kishor PB.	Overexpression of RNA-binding bacterial chaperones in rice leads to stay-green phenotype, improved yield and tolerance to salt and drought stresses.	Physiol Plant			2021		
49669	33667963	Igarashi H., Ito H., Shimada T., Kang D.J., Hamada S.	A novel rice dull gene, lowac1, encodes an RNA recognition motif protein affecting Waxyb pre-mRNA splicing.	Plant Physiol. Biochem.	162	100-109	2021	LOWAC1	LowAC1, OsLowAC1
49670	33217085	Liu H., Lyu H.M., Zhu K., Van de Peer Y., Max Cheng ZM.	The emergence and evolution of intron-poor and intronless genes in intron-rich plant gene families.	Plant J.	105(4)	1072-1082	2021		
49671	33527150	Cheng P., Cao L.J., Bai C., Ashikari M., Song X.J.	Fine mapping and characterization of two novel quantitative trait loci for early seedling growth in rice.	Planta	253(2)	56	2021		
49672	33773692	Zhang D., Duan X., Shang B., Hong Y., Sun H.	Analysis of lipidomics profile of rice and changes during storage by UPLC-Q-extractive orbitrap mass spectrometry.	Food Res. Int.	142	110214	2021		
49673	33638765	Lu J., Wang C., Zeng D., Li J., Shi X., Shi Y., Zhou Y.	Genome-Wide Association Study Dissects Resistance Loci against Bacterial Blight in a Diverse Rice Panel from the 3000 Rice Genomes Project.	Rice (N Y)	14(1)	22	2021		
49674	33668277	Nakhla W.R., Sun W., Fan K., Yang K., Zhang C., Yu S.	Identification of QTLs for salt tolerance at the Germination and Seedling Stages in Rice.	Plants (Basel)	10(3)		2021		
49675	33574456	Pang H., Chen Q., Li Y., Wang Z., Wu L., Yang Q., Zheng X.	Comparative analysis of the transcriptomes of two rice subspecies during domestication.	Sci Rep	11(1)	3660	2021		
49676	33539537	Tanaka N., Shenton M., Kawahara Y., Kumagai M., Sakai H., Kanamori H., Yonemaru J.I., Fukuoka S., Sugimoto K., Ishimoto M., Wu J., Ebana K.	Investigation of the Genetic Diversity of a Rice Core Collection of Japanese Landraces using Whole-Genome Sequencing.	Plant Cell Physiol.	61(12)	2087-2096	2021		
49677	33411959	Shao J.F., Yamaji N., Huang S., Ma J.F.	Fine regulation system for distribution of boron to different tissues in rice.	New Phytol.	230(2)	656-668	2021		
49678	33542250	Pandey M., Paladi R.K., Srivastava A.K., Suprasanna P.	Thiourea and hydrogen peroxide priming improved K+ retention and source-sink relationship for mitigating salt stress in rice.	Sci Rep	11(1)	3000	2021	TPP1,LEA17,_,TSPO,ENODL18,HAK21,RAB16C	OsTPP1, OsTPS, TPP,OsLEA17, OsLEA3-2, LEA3-2, LEA1,OsPIPK, PIPK,OsTSPO,OsENODL18, OsELA3, ELA3, EN20, OsEN20,OsHAK21,rab21, OsLEA27, rab16C, OsRAB16C, DHD
49679	33775358	Fei H., Yang Z., Lu Q., Wen X., Zhang Y., Zhang A., Lu C.	OsSWEET14 cooperates with OsSWEET11 to contribute to grain filling in rice.	Plant Sci.	306	110851	2021		
49680	33671261	Umnajkitikorn K., Fukudome M., Uchiumi T., Teaumroong N.	Elevated Nitrogen Priming Induced Oxinitro-Responses and Water Deficit Tolerance in Rice.	Plants (Basel)	10(2)		2021		
49681	33841829	Xia Y., Sun Y., Yuan J., Xing C.	Grain quality evaluation of <i>japonica</i> rice effected by cultivars, environment, and their interactions based on appearance and processing characteristics.	Food Sci Nutr	9(4)	2129-2138	2021		
49682	33533489	Xu J., Wang X., Zu H., Zeng X., Baldwin I.T., Lou Y., Li R.	Molecular dissection of rice phytohormone signaling involved in resistance to a piercing-sucking herbivore.	New Phytol.	230(4)	1639-1652	2021		
49683	33580630	Atighi M.R., Verstraeten B., De Meyer T., Kyndt T.	Genome-wide shifts in histone modifications at early stage of rice infection with Meloidogyne graminicola.	Mol. Plant Pathol.	22(4)	440-455	2021		
49684	33670537	Gautam H., Sehar Z., Rehman M.T., Hussain A., AlAjmi M.F., Khan N.A.	Nitric Oxide Enhances Photosynthetic Nitrogen and Sulfur-Use Efficiency and Activity of Ascorbate-Glutathione Cycle to Reduce High Temperature Stress-Induced oxidative stress in Rice (<i>Oryza sativa</i> L.) Plants.	Biomolecules	11(2)		2021		
49685	33643332	Zhang X., Wang Y., Zhu X., Wang X., Zhu Z., Li Y., Xie J., Xiong Y., Yang Z., He G., Sang X.	<i>Curled flag leaf 2</i>, Encoding a Cytochrome P450 Protein, Regulated by the Transcription Factor <i>Roc5</i>, Influences flag leaf Development in Rice.	Front Plant Sci	11	616977	2020	OUL1,SD37	ROC5, Roc5(t), Roc5, GL2-5, OsROC5, CLF1, OsCLF1, OsOUL1, OsHDZ7, OsHDZIP7, HDZ7, HDZIP7,OsCYP96B4, CYP96B4, CYP96B4/SD37, OsDSS1, DSS1, CFL2, OsCFL2, CFL2/OsCYP96B4, BSHT1, OsBSHT1, BSHT1/OsCYP96B4, DDT1, OsDDT1
49686	33496031	Duran-G?ell M., Flores-Costa R., Casulleras M., L?pez-Vicario C., Titos E., D?az A., Alcaraz-Quiles J., Horrillo R., Costa M., Fern?ndez J., Arroyo V., Cl?ria J.	Albumin protects the liver from tumor necrosis factor alpha-induced immunopathology.	FASEB J.	35(2)	e21365	2021		
49687	33569693	Saito H., Fukuta Y., Obara M., Tomita A., Ishimaru T., Sasaki K., Fujita D., Kobayashi N.	Two Novel QTLs for the harvest index that Contribute to High-Yield Production in Rice (Oryza sativa L.).	Rice (N Y)	14(1)	18	2021		
49688	33671062	Elshayb O.M., Nada A.M., Ibrahim H.M., Amin H.E., Atta A.M.	Application of Silica Nanoparticles for Improving Growth, Yield, and Enzymatic Antioxidant for the Hybrid Rice EHR1 Growing under Water Regime Conditions.	Materials (Basel)	14(5)		2021		
49689	33632064	Chen Y., Chen Y., Zhang Y., Zhang D., Li G., Wei J., Hua X., Lv B., Liu L.	Heterotrimeric G protein gamma subunit DEP1 is involved in hydrogen peroxide signaling and promotes aerenchyma formation in rice roots.	Plant Signal Behav	16(5)	1889251	2021		
49690	33252650	Nasir F., Bahadur A., Lin X., Gao Y., Tian C.	Novel insights into host receptors and receptor-mediated signaling that regulate arbuscular mycorrhizal symbiosis.	J. Exp. Bot.	72(5)	1546-1557	2021	ASP1,LYK4,WD40-12,WD40-66,CERK1,SMAX1,KAI2,D3,CEBIP,LYK5	OsLIS-L1, OsWD40-155, ASP1, TPR2, OsTPR2, OsREL2, REL2, OsTPL3, TPL3, OsTPL2, TPL2, ASP-LSL,OsLysM-RLK1, LysM-RLK1, OsLYK4, OsNFR5/OsRLK2, OsNFR5, NFR5, OsRLK2, RLK2,OsWD40-12, TPR1, OsTPR1,OsWD40-66, TPR3, OsTPR3, TPR1, OsTRP1, OsTPR3, OsTPL2, TPL2, OsTPL, TPL,OsCERK1, OsLysM-RLK9, Os-CERK1, Os-LysM-RLK9, OsLysMRLK9, OsCERK1/OsLYK9, OsLYK9, LYK9,OsSMAX1,D14L, OsD14L, OsKAI2,d3, dwf3, D3/OsMAX2, Os_F0760, SOL1, OsORE9, ORE9, MAX2, OsRFPH2-10, RFPH2-10, OsD3,  OsFBL27, FBL27,CEBiP, Os-LYP1, LYP1, OsCEBiP,OsLysM-RLK2, LysM-RLK2, OsLYK5, OsNFR5, NFR5, OsMYR1/OsLYK2, OsMYR1, OsLYK2, MYR1, LYK2, NFR5/MYR1
49691	33670503	Devarajan A.K., Muthukrishanan G., Truu J., Truu M., Ostonen I., Kizhaeral S S., Panneerselvam P., Kuttalingam Gopalasubramanian S.	The Foliar Application of Rice Phyllosphere Bacteria induces Drought-Stress Tolerance in <i>Oryza sativa</i> (L.).	Plants (Basel)	10(2)		2021		
49692	33670642	Hwang O.J., Back K.	Suppression of Rice cryptochrome 1b Decreases Both Melatonin and Expression of Brassinosteroid Biosynthetic Genes Resulting in Salt Tolerance.	Molecules	26(4)		2021	CPD1,SL,CRY1B,BZR1,D61,CPD2,DET2;2,XTH23,SNAT1,BRD1,DWARF4,ROMT9,SNAT2	OsCPD1, CYP90A3, CYP90A3/OsCPD1, CPD, OsCPD2, CPD2,OsSL, sl (spl1), sl*, sl, spl1, CYP71P1, Os CYP71P1, T5H, OsT5H, CYP71A1, OsCYP71A1, OsLLM1, LLM1, LLM1/OsSL, ELL1, OsELL1, ELL1/SL, OsT5H1,OsCRY1b, OsCRY2, CRY1b, CRY1, OsCCT1b, CCT1b,OsBZR1, Os BZR1, OsBES1-6, BES1-6,d61*, dwf42, d61, OsBRI1, OSBRI1, BRI1, Os BRI1, Osbri1, OsBRKq1, BRKq1,OsCPD2, CYP90A4, CYP90A4/OsCPD2,OsDET2;2,OsXTH23, XTR3, OsXTR3,OsSNAT1, OsSNAT, SNAT, OsGNAT2, GNAT2,brd1, OsDWARF, DWARF, OsBR6ox, BR6ox, CYP85A1, CYP85A4, OsDWF, CYP85A1/OsDWARF, OsBRD1, OsCYP85A1,OsDWARF4, osdwarf4, OsDWF4, DWF4, CYP90B2, OsCYP90B2, D4, OsD4,COMT, OsCOMT, ROMT-9, OsCOMT1, OsCAldOMT1, CAldOMT1, OsOMT, OsCOMT15, COMT15,OsSNAT2 
49693	33652675	Pacheco D.F., Gonz?lez Ceballos L., Castro A.Z., Conde Gonz?lez MR., Gonz?lez de la Torre L., Rostgaard L.P., Espinoza L., D?az K., Olea A.F., Coll Garc?a Y.	Synthesis of New Steroidal Carbamates with Plant-Growth-Promoting Activity: Theoretical and Experimental Evidence.	Int J Mol Sci	22(5)		2021		
49694	33458815	Zhang J., Li R., Xu M., Hoffmann R.I., Zhang Y., Liu B., Zhang M., Yang B., Li Z., Peters R.J.	A (conditional) role for labdane-related diterpenoid natural products in rice stomatal closure.	New Phytol.	230(2)	698-709	2021		
49695	33547986	Yu H., Li Q., Li Y., Yang H., Lu Z., Wu J., Zhang Z., Shahid M.Q., Liu X.	Genomics Analyses Reveal Unique Classification, Population Structure and Novel Allele of Neo-Tetraploid Rice.	Rice (N Y)	14(1)	16	2021		
49696	33672641	Kumar V., Jain P., Venkadesan S., Karkute S.G., Bhati J., Abdin M.Z., Sevanthi A.M., Mishra D.C., Chaturvedi K.K., Rai A., Sharma T.R., Solanke A.U.	Understanding Rice-<i>Magnaporthe Oryzae</i> Interaction in Resistant and Susceptible Cultivars of Rice under Panicle Blast Infection Using a Time-Course Transcriptome Analysis.	Genes (Basel)	12(2)		2021		
49697	33547973	Hathwaik L.T., Horstman J., Thomson J.G., Thilmony R.	Efficient Gene Stacking in Rice Using the GAANTRY System.	Rice (N Y)	14(1)	17	2021		
49698	33609225	Liu L., Li X., Liu S., Min J., Liu W., Pan X., Fang B., Hu M., Liu Z., Li Y., Zhang H.	Identification of QTLs associated with the anaerobic germination potential using a set of Oryza nivara introgression lines.	Genes Genomics	43(4)	399-406	2021		
49699	33563229	Wei Z., Yuan Q., Lin H., Li X., Zhang C., Gao H., Zhang B., He H., Liu T., Jie Z., Gao X., Shi S., Wang B., Gao Z., Kong L., Qian Q., Shang L.	Linkage analysis, GWAS, transcriptome analysis to identify candidate genes for rice seedlings in response to high temperature stress.	BMC Plant Biol.	21(1)	85	2021		
49700	33206180	Sun F., Ding L., Feng W., Cao Y., Lu F., Yang Q., Li W., Lu Y., Shabek N., Fu F., Yu H.	Maize transcription factor ZmBES1/BZR1-5 positively regulates kernel size.	J. Exp. Bot.	72(5)	1714-1726	2021		
49701	33554275	Borah M., Das S., Bora S.S., Boro R.C., Barooah M.	Comparative assessment of multi-trait plant growth-promoting endophytes associated with cultivated and wild Oryza germplasm of Assam, India.	Arch. Microbiol.			2021		
49702	33717206	Calvo-Baltan?s V., Wang J., Chae E.	Hybrid Incompatibility of the Plant Immune System: An Opposite Force to Heterosis Equilibrating Hybrid Performances.	Front Plant Sci	11	576796	2020		
49703	33587747	Mathan J., Singh A., Ranjan A.	Sucrose transport and metabolism control carbon partitioning between stem and grain in rice.	J. Exp. Bot.			2021		
49704	33602120	Frontini M., Boisnard A., Frouin J., Ouikene M., Morel J.B., Ballini E.	Genome-wide association of rice response to blast fungus identifies loci for robust resistance under high nitrogen.	BMC Plant Biol.	21(1)	99	2021		
49705	33668736	Lee S.B., Kim N., Jo S., Hur Y.J., Lee J.Y., Cho J.H., Lee J.H., Kang J.W., Song Y.C., Bombay M., Kim S.R., Lee J., Seo Y.S., Ko J.M., Park D.S.	Mapping of a Major QTL, <i>qBK1z</i>, for Bakanae disease resistance in Rice.	Plants (Basel)	10(3)		2021		
49706	33554424	Wu Q., Zhang G., Chen Y., Yu J., Zhou Y., Shu Z., Ge L.	Seed dressing with triflumezopyrim controls brown planthopper populations by inhibiting feeding behavior, fecundity and enhancing rice plant resistance.	Pest Manag. Sci.	77(6)	2870-2886	2021		
49707	33567358	Xie W., Li Y., Li Y., Ma L., Ashraf U., Tang X., Pan S., Tian H., Mo Z.	Application of gamma-aminobutyric acid under low light conditions: Effects on yield, aroma, element status, and physiological attributes of fragrant rice.	Ecotoxicol. Environ. Saf.	213	111941	2021		
49708	33612118	Tang D., Wei F., Khan A., Munsif F., Zhou R.	Degradation of mitochondrial structure and deficiency of complex I were associated with the transgenic CMS of rice.	Biol. Res.	54(1)	6	2021		
49709	33258954	Chen F., Zheng G., Qu M., Wang Y., Lyu M.A., Zhu X.G.	Knocking out NEGATIVE REGULATOR OF PHOTOSYNTHESIS 1 increases rice leaf photosynthesis and biomass production in the field.	J. Exp. Bot.	72(5)	1836-1849	2021	HDY1,_,_,FDC1,PSB27,PSB28,PSAE,BHLH77,LFNR1,PC	OsFdC2, FdC2, OsHDY1, PetF-2,,,OsFdC1, FdC1,Psb27, OsPSB27, Psb27-H1,Psb28, OsPSB28,PsaE, OsPsaE,OsbHLH077, bHLH077, bHLH77, OsNRP1, NRP1,OsLFNR1, LFNR2, Os-LFNR2, OsLFNR2, FNR, PetH-2,OsPC, PetE, OsPETE, OsCPL1, CPL1
49710	33649694	Guha T., Mukherjee A., Kundu R.	Nano-Scale Zero Valent Iron (nZVI) Priming Enhances Yield, Alters Mineral Distribution and Grain Nutrient Content of <i>Oryza sativa</i> L. cv. Gobindobhog: A Field Study.	J. Plant Growth Regul.		1-24	2021		
49711	33616428	Pokhrel S., Ponniah S.K., Jia Y., Yu O., Manoharan M.	Transgenic Rice Expressing isoflavone synthase Gene from Soybean Shows Resistance against Blast Fungus (Magnaporthe oryzae).	Plant Dis.			2021		
49712	33775365	Xian L., Long Y., Yang M., Chen Z., Wu J., Liu X., Wang L.	iTRAQ-based quantitative glutelin proteomic analysis reveals differentially expressed proteins in the physiological metabolism process during endosperm development and their impacts on yield and quality in autotetraploid rice.	Plant Sci.	306	110859	2021		
49713	33570563	Faith Onuh A., Miwa K.	Regulation, Diversity, and Evolution of Boron Transporters in Plants.	Plant Cell Physiol.			2021		
49714	33421204	Vaughan-Hirsch J., Tallerday E.J., Burr C.A., Hodgens C., Boeshore S.L., Beaver K., Melling A., Sari K., Kerr I.D., ?imura J., Ljung K., Xu D., Liang W., Bhosale R., Schaller G.E., Bishopp A., Kieber J.J.	Function of the pseudo phosphotransfer proteins has diverged between rice and Arabidopsis.	Plant J.	106(1)	159-173	2021		
49715	33665118	Jeong Y.S., Ku H.K., Jung Y.J., Kim J.K., Lee K.B., Kim J.K., Lim S.H., Lee D., Ha S.H.	2A-linked bi-, tri-, and quad-cistrons for the stepwise biosynthesis of beta-carotene, zeaxanthin, and ketocarotenoids in rice endosperm.	Metab Eng Commun	12	e00166	2021		
49716	33638990	Castano-Duque L., Ghosal S., Quilloy F.A., Mitchell-Olds T., Dixit S.	An Epigenetic Pathway in Rice Connects Genetic Variation to Anaerobic Germination and Seedling Establishment.	Plant Physiol.			2021	MYBAS1,FMOGS-OX-L5,CLSY1,_	OsMYBAS1, Os2R_MYB92, 2R_MYB92,OsFMOGS-OX-L5,OsCLSY1, CHR722, OsCHR722,
49717	33627723	Wada H., Chang F.Y., Hatakeyama Y., Erra-Balsells R., Araki T., Nakano H., Nonami H.	Endosperm cell size reduction caused by osmotic adjustment during nighttime warming in rice.	Sci Rep	11(1)	4447	2021		
49718	33569675	Ma X., Liu C., Kong X., Liu J., Zhang S., Liang S., Luan W., Cao X.	Extensive profiling of the expressions of tRNAs and tRNA-derived fragments (tRFs) reveals the complexities of tRNA and tRF populations in plants.	Sci China Life Sci	64(4)	495-511	2021		
49719	33638799	Wang Y., Meng Y., Ma Y., Liu L., Wu D., Shu X., Pan L., Lai Q.	Combination of High Zn Density and Low Phytic Acid for Improving Zn Bioavailability in Rice (Oryza stavia L.) Grain.	Rice (N Y)	14(1)	23	2021		
49720	33578284	Nguyen Huynh Phuong U., Pham Thi Phuong T., Imamura K., Kitaya Y., Hidema J., Furuta M., Yasuaki M.	The characterization of tocols in different plants parts of six Japanese rice cultivars relating to their UVB-sensitivity.	Plant Physiol. Biochem.	161	48-53	2021		
49721	33206982	Kobayashi T., Atsushi J Nagano, Naoko K Nishizawa	Iron deficiency-inducible peptide-coding genes OsIMA1 and OsIMA2 positively regulate a major pathway of iron uptake and translocation in rice.	J. Exp. Bot.	72(6)	2196-2211	2021	IMA2	OsIMA2
49722	19771527	Anand S., Tyagi A.K.	Characterization of a pollen-preferential gene OSIAGP from rice (Oryza sativa L. subspecies indica) coding for an arabinogalactan protein homologue, and analysis of its promoter activity during pollen development and pollen tube growth.	Transgenic Res.	19(3)	385-97	2010	AGP	OsAGP, OSIAGP, OSJAGP
49723	33283410	Yu M., Wu M., Ren Y., Wang Y., Li J., Lei C., Sun Y., Bao X., Wu H., Yang H., Pan T., Wang Y., Jing R., Yan M., Zhang H., Zhao L., Zhao Z., Zhang X., Guo X., Cheng Z., Yang B., Jiang L., Wan J.	Rice floury endosperm 18 encodes a pentatricopeptide repeat protein required for 5' processing of mitochondrial nad5 messenger RNA and endosperm development.	J Integr Plant Biol	63(5)	834-847	2021	FLO18	OsFLO18
49724	33721900	Zhang C., Zhang J., Tang Y., Liu K., Liu Y., Tang J., Zhang T., Yu H.	DEEP GREEN PANICLE1 suppresses GOLDEN2-LIKE activity to reduce chlorophyll synthesis in rice glumes.	Plant Physiol.	185(2)	469-477	2021	DGP1,GLK2	OsDGP1,OsGLK2, OsGlk2
49725	33336892	Zhang K., Zhu X., Durst S., Hohenberger P., Min-Jung Han, An G., Vaidurya P Sahi, Riemann M., Nick P.	A rice tubulin tyrosine ligase-like 12 protein affects the dynamic and orientation of microtubules.	J Integr Plant Biol	63(5)	848-864	2021	TTLL12	OsTTLL12
49726	15888682	Nathan M Springer, Shawn M Kaeppler	Evolutionary divergence of monocot and dicot methyl-CpG-binding domain proteins.	Plant Physiol.	138(1)	92-104	2005	MBD710,MBD711,MBD712,MBD707,MBD704,MBD718,MBD709,MBD715,MBD706,MBD713,MBD705,MBD716,MBD717,MBD714,MBD701,MBD708,MBD703	OsDLN48, DLN48, OsMBD710, OsDLN47, DLN47, OsBrdST2, BrdST2,OsMBD711,OsMBD712,OsMeCP, MeCP, OsMBD707,OsMBD704,OsMBD718,OsMBD709,OsMBD715,OsMBD706,OsMBD713,OsMBD705,OsMBD716,OsMBD717,OsMBD714,OsMBD701,OsMBD708,OsMBD703
49727	0	XING Bao, CHEN Zhen-hua, ZHANG Zhi-guo	Map-based Cloning of a Curly Leaf Gene CLF1 in Rice	BIOTECHNOLOGY BULLETIN	33(9)	110-115	2017	OUL1	ROC5, Roc5(t), Roc5, GL2-5, OsROC5, CLF1, OsCLF1, OsOUL1, OsHDZ7, OsHDZIP7, HDZ7, HDZIP7
49728	31174339	Jeroen De Zaeytijd, Pierre Roug?, Smagghe G., Els J M Van Damme	Structure and Activity of a Cytosolic Ribosome-Inactivating Protein from Rice.	Toxins (Basel)	11(6)		2019	RIP1.1	OsRIP1, RIP1, OsjRIP1.1
49729	0	Ding Z., Wu X., Wang T.	The rice tapetum-specific gene RA39 encodes a type I ribosome-inactivating protein	Sex. Plant Reprod.	15	205-212	2002	RIP18	OSRIP18, RA39, OsRA39, OSjRIP7.2, RIP7.2
49730	0	Oikawa K., Fujisaki K., Shimizu M., Takeda T., Saitoh H., Hirabuchi A., Bia?as A., Langner T., Kellner, R., Bozkurt T. O., Cesari S., Kroj T., Maidment J. H. R., Banfield M. J., Kamoun S	The blast pathogen effector AVR-Pik binds and stabilizes rice heavy metal- associated (HMA) proteins to co-opt their function in immunity	bioRxiv			2020	HIPP20,HPP3,HIPP19,HPP4	OsHIPP20, OsaHIP20, HIP20,OsHPP3, OsaHPP03, HPP03,OsHIPP19, OsaHIP19, HIP19,OsHMP15, HMP15, OsHPP4, OsaHPP04, HPP04 
49731	0	HE Yongqi, ZHAO JiaFENG Defeng, HUANG Zhibo, LIANG Jiaming, ZHENG Yufei, CHENG Jinping, YING Jifeng, WANG Zhoufei	RNA-Seq Study Reveals AP2-Domain-Containing Signalling Regulators Involved in Initial Imbibition of Seed Germination in Rice	Rice Science	27(4)	302-314	2020	DREB1B,ERF28,ERF133,DREB1A	OsDREB1B, ERF31, OsERF031, OsERF#031, OsERF31, AP2/EREBP#169, AP2/EREBP169, OsDREB1b, OsDREB1C, OsCBF1, CBF1,OsERF#028, OsERF028, OsERF28, OsERF#029, OsERF029, OsERF29, ERF29, DERF4, OsDERF4, AP2/EREBP#161, AP2/EREBP161, OsDREB1J, OsDREB1I, OsDREB1G,OsERF#133, OsERF133, AP2/EREBP#065, AP2/EREBP65, OsDREB1H, DREB1H, OsDREB1m, DREB1m,OsDREB1A, Os DREB1A, CBF3, OsCBF3, OsDREB1A/OsCBF3, ERF24, OsERF24, OsERF024, OsERF#024, AP2/EREBP#114, AP2/EREBP114, OsDREBL
49732	33805287	Wang C., Yang X., Li G.	Molecular Insights into inflorescence meristem Specification for Yield Potential in Cereal Crops.	Int J Mol Sci	22(7)		2021	LARGE2,APO1,RFL	OsLARGE2, OsUPL2, UPL2,  OsHECT8, HECT8,apo1(t), apo1, SCM2, SCM2/APO1, OsFbox321, Os_F0393, Pbl6/APO1, Pbl6, OsPbl6,  OsFBX202, FBX202,RFL, OSL, FL, APO2, APO2/RFL, SSC, SSC/RFL/APO2, OsRFL, OsFL, OsAPO2, OsSSC
49733	0	Zhang G., Lu Y., Zhang H., Yang J., Liu G.	Genetic studies on the hybrid sterility in cultivated rice (Oryza sativa L.) IV. Genotypes for F1 pollen sterility.	Acta Genet. Sinica	21	34-41	1994	_	Sc
49734	0	Yang C., Chen Z., Zhuang C., Mei M., Liu Y.-G.	Genetic and physical fine-mapping of theSc locus conferringindica-japonica hybrid sterility in rice (Oryza sativa L.)	Chinese Sci. Bull.	49	1718-1721	2004	_	Sc
49735	33689034	Wang L., Zhang W., Liu S., Tian Y., Liu X., Yan H., Cai Y., Teng X., Dong H., Chen R., Jiang X., Wang Y., Wan J.	Rice FLOURY shrunken endosperm 5 Encodes a Putative Plant Organelle RNA Recognition Protein that Is Required for cis-Splicing of Mitochondrial nad4 intron 1.	Rice (N Y)	14(1)	29	2021	DEK35,RL1,MISF68,FSE5,ABO6,NDA,NDB3,DEK43,AOX1A,NAD4	OsDEK35,OsRL1, OsEMP8, EMP8,OsMISF68,OsFSE5, OsPORR1, PORR1,OsABO6,OsNDA, NDB3, OsNDB3, OsNDB2, NDB2,OsNDB3,OsDEK43, PPR5, OsPPR5,Ao1-1, AOX1a, OsAOX1a, AOX 1a,nad4, nadIV
49736	33741527	Wu X., Liang Y., Gao H., Wang J., Zhao Y., Hua L., Yuan Y., Wang A., Zhang X., Liu J., Zhou J., Meng X., Zhang D., Lin S., Huang X., Han B., Li J., Wang Y.	Enhancing rice grain production by manipulating the naturally evolved cis-regulatory element-containing inverted repeat sequence of OsREM20.	Mol Plant	14(6)	997-1011	2021	REM20	OsREM20
49737	33735469	Chang-Jiao Ke, Xian-Ju Lin, Bao-Yu Zhang, Li-Yu Chen	Turgor regulation defect 1 proteins play a conserved role in pollen tube reproductive innovation of the angiosperms.	Plant J.	106(5)	1356-1365	2021	TOD1	OsTOD1
49738	33731501	Teramura H., Yamada K., Ito K., Kasahara K., Kikuchi T., Kioka N., Fukuda M., Kusano H., Tanaka K., Shimada H.	Characterization of novel SUMO family genes in the rice genome.	Genes Genet. Syst.	96(1)	25-32	2021	SUMO1,SUMO3,SUMO2,HSFB2B,SUMO6,SUMO4,SUMO5	smt3, SMT3, OsSUMO1,OsSUMO3,OsSUMO2,HSfB2b, OsHsfB2b, OsHsf-21, rHsf2, HSF2, HSF21, OsHSF21, OsHSF7,OsSUMO6,OsSUMO4,OsSUMO5
49739	33721897	Shao Y., Kevin R Lehner, Zhou H., Taylor I., Zhu M., Mao C., Philip N Benfey	VAP-RELATED SUPPRESSORS OF TOO MANY MOUTHS (VST) family proteins are regulators of root system architecture.	Plant Physiol.	185(2)	457-468	2021	VST1,VST2	OsVST1,OsVST2
49740	33825994	R A O Yuchun, J I A O Ran, W A N G Sheng, W U Xianmei, Y E Hanfei, P A N Chenyang, L I Sanfeng, Dedong X., Z H O U Weiyong, D A I Gaoxing, H U Juan, R E N Deyong, W A N G Yuexing	SPL36 Encodes a Receptor-like Protein Kinase that Regulates Programmed Cell Death and Defense Responses in Rice.	Rice (N Y)	14(1)	34	2021	NH2,PR1A,YGL10,AOS2,NYC1,YGL13,WRKY53,CLPP5,PORA,SPL36,BWMK1,_,LYP6	OsNH2, OsNPR2, NPR2, OsNPR2/NH2, DLN21, OsDLN21, PR2, OsNPR1, NPR1,  OsBTBA2, BTBA2, OsNPR3, NPR3,OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1, OsPR1b, PR1alpha, OsPR1alpha,CAO, OsCAO, CAO1, OsCAO1, Oslls1, Lls1, DVR, PGL,OsAOS2, CYP74A2, OsAOS, OsAOS1,nyc1, OsNYC1,OsSIG1, SIG1, Os-SigA, OsSigA, Os Sig1, SIGA,OsWRKY53, WRKY-53,OsClpP5, ClpP5, OsClp4, CLP4,OsPorA, OsPORA,OsSPL36,OsBWMK1, MPK12, MAPK1, OsMAPK1, OsMPK12, OsMPK17-1, MPK17-1, OsBWMK1L, OsBWMK1M, OsBWMK1S, OsMAPK17-1, MAPK17-1, MAPK12, OsMAPK12,OsMPK13, OsMAPK2, OsBIMK2, BIMK2, MPK13, MAPK2, OsMAPK17-2, MAPK17-2,Os-LYP6, OsLYP6
49741	33831183	Yun-A Jeon, Hyun-Sook Lee, Sun-Ha Kim, Kyu-Chan Shim, Ju-Won Kang, Hyun-Jung Kim, Thomas H Tai, Sang-Nag Ahn	Natural variation in rice ascorbate peroxidase gene APX9 is associated with a yield-enhancing QTL cluster.	J. Exp. Bot.	72(12)	4254-4268	2021	APX9,_	OsAPX9,MS5
49742	33751094	Tonosaki K., Ono A., Kunisada M., Nishino M., Nagata H., Sakamoto S., Kijima S.T., Furuumi H., Nonomura K.I., Sato Y., Ohme-Takagi M., Endo M., Comai L., Hatakeyama K., Kawakatsu T., Kinoshita T.	Mutation of the imprinted gene OsEMF2a induces autonomous endosperm development and delayed cellularization in rice.	Plant Cell	33(1)	85-103	2021	SAUR28,EMF2A,GIF1,EMF2B,XA13,SWEET1A,FKII,SUT2,MADS89,IAA15,ARF7,HXK7,IAA10,WX1,ARF13,PIN8,ARF22,PILS1,YUCCA9,RSUS1,MADS77,MADS87,RSUS3,SAUR57	OsSAUR28,OsEMF2a, OsEMF2, EMF2, ZOS4-02, OsZOS4-02,gif1, CIN2, OsCIN2, OsGIF1, WB1, OsWB1, GIF1/OsCIN2,OsEMF2b, EMF2b, GW9, OsGW9, GW9/OsEMF2b ,xa13, Xa13, Os8N3, Os-8N3, 8N3, OsSWEET11, SWEET11, OsSWEET11/Xa13, Xa13/Os8N3/SWEET11, Os8N3/Xa13, OsSWEET11/Os8N3, OsSWEET11a, SWEET11a,OsSWEET1a, SWEET1a,OsFKII, OsFK1, FK1, FRK-2, OsFRK-2, FRK2, OsFRK2,OsSUT2(t), SUT2M, OsSUT2, OsSUT2M, OsSUT5,OsMADS89,OsIAA15,OsARF7,OsHXK7, OsHXK8,OsIAA10, OsIAA5, DLN71, OsDLN71,wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx,OsARF13, OsARF12, ARF12,OsPIN8,OsARF22,OsPILS1,OsYUCCA9, OsYUC9, YUC9,sus1, RSus1(t), SUS1, SS2, OsScS2, RSs2, RSus1, SuSy1, OsSUS1, RSS2, RSus2, OsRSUS1,OsMADS77,OsMADS87,RSus3(t), SUS3, SS3, OsScS3, RSs3, RSus3, OsSUS3, RSS3, OsEnS-111, Susy3, OsSusy3,OsSAUR57
49743	33836579	Li L., Zhang H., Chen C., Huang H., Tan X., Wei Z., Li J., Yan F., Zhang C., Chen J., Sun Z.	A class of independently evolved transcriptional repressors in plant RNA viruses facilitates viral infection and vector feeding.	Proc. Natl. Acad. Sci. U.S.A.	118(11)		2021	BHLH9,TIFY6B,TIFY11A,PFT1,BHLH10,TIFY10C,TIFY11C,TIFY9,TIFY11D	OsbHLH009, bHLH009, OsMYC2, MYC2,OsJAZ8, JAZ8, OsJAZ 4, OsJAZ4, JAZ4, OsTIFY6b, OsJAZ4-2, JAZ4-2. OsJAZ3, JAZ3,OsJAZ3, JAZ3, OsJAZ 9, OsJAZ9, Os-JAZ9, JAZ9, OsTIFY11a, OsJAZ6, JAZ6,OsPFT1, OsMED25_1, MED25_1, OsMED25, MED25, OsvWA27, vWA27,OsICE1, ICE1, OsbHLH010, bHLH010, OsMYL1, MYL1, bHLH116, OsMYC3, MYC3 ,OsJAZ7, JAZ7, OsJAZ 8, OsJAZ8, Os-JAZ8, JAZ8, OsTIFY10c, OsTIFY10c/OsJAZ8,OsJAZ2, JAZ2, OsJAZ 11, OsJAZ11, Os-JAZ11, JAZ11, OsTIFY11c, OsJAZ1, JAZ1,OsJAZ11, OsJAZ5, OsTIFY9, JAZ11, JAZ5, JAZ11/TIFY9 ,OsTIFY11d, OsJAZ1, JAZ1, OsJAZ 12, OsJAZ12, JAZ12
49744	33721793	Premachandran K., Srinivasan T.S., Wilson Alphonse CR.	In silico approach on sequential and structural variability in oryzacystatin and its interaction with cysteine protease enzymes of insect.	Phytochemistry	186	112728	2021		
49745	33771925	Wang L., Cao S., Wang P., Lu K., Song Q., Zhao F.J., Chen Z.J.	DNA hypomethylation in tetraploid rice potentiates stress-responsive gene expression for salt tolerance.	Proc. Natl. Acad. Sci. U.S.A.	118(13)		2021	RSOSPR10,PLDalpha4,JAR1,ACS4,PLDalpha5,BHLH9,PR10A,_,TIFY9,TIFY10B,TIFY11C,AOS1,TIFY10C,SH11,TIFY11D,AOC	RSOsPR10, RsOsPR10a, OsPR10a, OsPR10alpha, OsPR10, PR10, OsBETV1, BETV1,OsPLDalpha4, RPLD3, OsPLDeta2, OsC2DP50, C2DP50,OsJAR1, OsGH3.5, GH3.5, OsGH3-5, GH3-5,OsACS4, OsOPCL1, OPCL1,OsPLDalpha5, RPLD4, OsPLDeta3, OsC2DP51, C2DP51,OsbHLH009, bHLH009, OsMYC2, MYC2,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,Lox2:Os:1, OsLOX9, LOX9, OsLOX8, LOX8, OsLOX2, LOX2, OsRLL, OsHI-LOX, HI-LOX, RLL2 LOX, RLL2, Lox2osPil, OsLOX2;1, LOX2;1, OsLOX1, OsLOX7, LOX7,OsJAZ11, OsJAZ5, OsTIFY9, JAZ11, JAZ5, JAZ11/TIFY9 ,OsJAZ6, OsJAZ 7, OsJAZ7, OsTIFY10B, JAZ6, JAZ7,OsJAZ2, JAZ2, OsJAZ 11, OsJAZ11, Os-JAZ11, JAZ11, OsTIFY11c, OsJAZ1, JAZ1,OsAOS, OsAOS1, CYP74A1, OsAOS2, AOS2,OsJAZ7, JAZ7, OsJAZ 8, OsJAZ8, Os-JAZ8, JAZ8, OsTIFY10c, OsTIFY10c/OsJAZ8,OsJAmyb, JAmyb, OsJAMyb, OsMYB21, MYB21, Os2R_MYB91, 2R_MYB91, OgSH11, OsSH11,OsTIFY11d, OsJAZ1, JAZ1, OsJAZ 12, OsJAZ12, JAZ12,OsAOC, AOC1, OsAOC1, HB, CPM2, OsAOC4, AOC4
49746	33674811	Wang D.R.	Road map for domesticating multi-genome rice using gene editing.	Nature	591(7851)	537-538	2021		
49747	33854288	Jin Y.N., Cui Z.H., Ma K., Yao J.L., Ruan Y.Y., Guo Z.F.	Characterization of ZmCOLD1, novel GPCR-Type G Protein genes involved in cold stress from <i>Zea mays</i> L. and the evolution analysis with those from other species.	Physiol Mol Biol Plants	27(3)	619-632	2021		
49748	33688983	Qiao W., Wang Y., Xu R., Yang Z., Sun Y., Su L., Zhang L., Wang J., Huang J., Zheng X., Liu S., Tian Y., Chen L., Liu X., Lan J., Yang Q.	A functional chromogen gene C from wild rice is involved in a different anthocyanin biosynthesis pathway in indica and japonica.	Theor. Appl. Genet.	134(5)	1531-1543	2021	BHLH97,LHW,ANR4,C,CCR26,_,MYB1,CHI3,DLN156,_,PIL11,ANS,DLN254,PAL1,RC,F3'H,DLN231,BHLH10,_,WD40-198,WD40-58,ANS2,WD40-77,2ODD2	OsbHLH097, bHLH097, OsbHLH097,OsLHW,OsANR4,C, Cp, OsC1, Os-C1, C1, OsMyb6, Myb6, OsPL6, PL6, OsGL1E, GL1E, Os2R_MYB63, 2R_MYB63, OsC1PLSr, C1PLSr,OsCCR26,OsbHLH,OsMyb1, OSMYB1, R2R3-MYB, OsDLN141, DLN141, Os2R_MYB55, 2R_MYB55 ,gh1, GH1, OsGH1, OsCHI, Cfi, CHI, OsCHI3,R2R3-MYB, OsDLN156, Os2R_MYB62, 2R_MYB62 ,R2R3-MYB, MYB48/59, OsMYB48/59, Os2R_MYB98, 2R_MYB98,OsPIL11, OsbHLH102, bHLH102, PIF4, OsPIF4,ANS, OsANS1, ANS1, LDOX, LDOX1, OsLDOX, OsLDOX1,R2R3-MYB, OsDLN254, OsMYB2, Os2R_MYB94, 2R_MYB94,OsPAL, Pal1*, Pal1, PAL, Pal_1, PalI, PAL2, OsPAL01, PAL01, OSPAL, CP-1, GP-1, OsPAL1, PAL3, OsPAL3,Rc, OsbHLH017, OsbHLH17, SD7-1, qSD7-1/qPC7, OsGL3C, GL3C,OsF3'H, OsCYP75B3, CYP75B3, OsF3'H10, F3'H10, OsCYP71P3, CYP71P3,R2R3-MYB, OsDLN231, OsMYB108, MYB108, OsMYB31, MYB31, Os2R_MYB86, Os2R_MYB86, 2R_MYB86 ,OsICE1, ICE1, OsbHLH010, bHLH010, OsMYL1, MYL1, bHLH116, OsMYC3, MYC3 ,OsWD,OsWD40-198,OsWD40-58,OsANS2,OsWD40-77,FLS, 2-ODD2, Os2-ODD2, Os2ODD2, OsF3H, F3H, F3H2, OsF3H2, OsF3H03g, F3H03g, OsSAH1, SAH1, OsF3H1, F3H1
49749	33677391	Son S., Moon S.J., Kim H., Lee K.S., Park S.R.	Identification of a novel NPR1 homolog gene, OsNH5N16, which contributes to broad-spectrum resistance in rice.	Biochem. Biophys. Res. Commun.	549	200-206	2021		
49750	33483723	Cui L., Zhang C., Li Z., Xian T., Wang L., Zhang Z., Zhu G., Peng X.	Two plastidic glycolate/glycerate translocator 1 isoforms function together to transport photorespiratory glycolate and glycerate in rice chloroplasts.	J. Exp. Bot.	72(7)	2584-2599	2021	PLGG2,PLGG1	OsPLGG2, OsPLGG1b, PLGG1b,OsPLGG1, OsPLGG1a, PLGG1a
49751	33629374	Wang G., Li X., Ye N., Huang M., Feng L., Li H., Zhang J.	OsTPP1 regulates seed germination through the crosstalk with abscisic acid in rice.	New Phytol.	230(5)	1925-1939	2021	GAMYB,ABA8OX3,TPP1,GNP1	OsGAMYB, GAM1, OsGAMyb, Os-MYBGA, Os GAMYB, OsMYBGA, MYBGA, Os2R_MYB15, 2R_MYB15 ,OsABA8OX3, OsABA8ox3, CYP707A7, OsCYP707A7, OsAba-ox3, OsABA8ox3, OsABA8'ox3, ABA8'ox3, OsABAX3, ABAX3, OsABA8'OH3, ABA8'OH3,OsTPP1, OsTPS, TPP,GA20OX1, OsGA20ox1, 20ox1, GA20ox-1, ga20ox1, Os20ox, C20OX2, OsGA20ox2, OsGA20ox-1, GA20ox1, OsGNP1
49752	33807467	Ga E., Song J., Min M.K., Ha J., Park S., Lee S.B., Lee J.Y., Kim B.G.	Reconstitution of Cytokinin Signaling in Rice Protoplasts.	Int J Mol Sci	22(7)		2021	RR21,RR26,RR23,PHP2,DLC1,AHP2,HK3,AHP1	OsRR21, Rrb1, Orr1, OsRR19, RR19, OsRRB1, ORR1,OsRR26, Rrb6, Orr6, OsRR16, RR16, OsRRB6,OsRR23, Rrb5, Orr3, OsRR18, RR18, OsRRB5,OsPHP2, Hpt4, OsHP5, HP5, OsHpt4, OsHP05,RR24, OsRR24, Rrb2, Orr4, OsRR17, RR17, OsRRB2, OsRR24/LEPTO1, OsLEPTO1, LEPTO1, OsDLC1,OHP2, HPt, OsAHP2 Hpt3, Ohp2, OsHP1, HP1, OsHpt3, OsHP01,OHK2, HK, OsHK3, Ohk, Crl2, Ohk2, OsHK3b, OsHK03,OHP1, HPt, OsAHP1, Hpt2, Ohp1, OsHP2, HP2, OsHpt2, OsHPt2, OsHP02
49753	33664392	Wang Y., Huang L., Du F., Wang J., Zhao X., Li Z., Wang W., Xu J., Fu B.	Comparative transcriptome and metabolome profiling reveal molecular mechanisms underlying OsDRAP1-mediated salt tolerance in rice.	Sci Rep	11(1)	5166	2021	ERF2,MYB30,NAC3,WAK76,BZIP23,WRKY69,ERF61,NAC1,WRKY62,CAX1B,DLN254,BZIP9,ERF91,WAK38,WAK59,ERF48,WRKY67,NHX2,PHR3,ERF127,NAC122,DREB1A,DREB1B,WAK40,WAK34,WAK60,BZIP62	OsWR4, WR4, OsERF#002, OsERF002, ERF002, OsERF2, AP2/EREBP#100, AP2/EREBP100,OsMYB30, OsMYB5P, MYB5P, OsMYB13a, MYB13a, Os2R_MYB26, 2R_MYB26, OsMYB30C, MYB30C,OsNAC3, NAC67, ONAC067, OnNAC3*, OsNAC3/ONAC067, DLN180, OsDLN180,OsWAK76,OsbZIP23, OsAREB1, OsABF2, Osbzip23, OsAREB2, OsZIP23, ZIP23,OsWRKY69,OsERF#061, OsERF061, OsERF61, AP2/EREBP#093, AP2/EREBP93,OsNAC1, ONAC027, ONAC27, NAC27, OMTN1, OsNAC1/ONAC027, DLN60, OsDLN60, OsORE1,OsWRKY62, OsWRKY62.1, OsWRKY62.2, XB10, OsWRKY62-1, OsWRKY62-2,OsCAX1b, CAX1b, CAX3, OsNCX10, NCX10,R2R3-MYB, OsDLN254, OsMYB2, Os2R_MYB94, 2R_MYB94,OsbZIP09, OsbZIP9, OsABF6, ABF6, HBF2,OsERF#091, OsERF091, OsERF91, AP59, OsAP59, AP2/EREBP#147, AP2/EREBP147, OsBIERF3, BIERF3,OsWAK38,OsWAK59,OsERF#048, OsERF048, OsERF48, AP2/EREBP#170, AP2/EREBP170, OsDRAP1, DRAP1, OsERF48/OsDRAP1,OsWRKY67,OsNHX2,OsPHR3, Os-PHR3, OsPHL1, PHL1 ,OsWR3, WR3, OsERF#127, OsERF127, AP2/EREBP#023, AP2/EREBP23, OsERF3, ERF3,OsNAC10, NAC10, ONAC122, NAC122, OsSNAC10, SNAC10,OsDREB1A, Os DREB1A, CBF3, OsCBF3, OsDREB1A/OsCBF3, ERF24, OsERF24, OsERF024, OsERF#024, AP2/EREBP#114, AP2/EREBP114, OsDREBL,OsDREB1B, ERF31, OsERF031, OsERF#031, OsERF31, AP2/EREBP#169, AP2/EREBP169, OsDREB1b, OsDREB1C, OsCBF1, CBF1,OsWAK40,OsWAK34,OsWAK60,OsbZIP62, OsABF8, OsEEL, EEL
49754	33723281	Wang K., Yan T.Z., Xu S.L., Yan X., Zhou Q.F., Zhao X.H., Li Y.F., Wu Z.X., Qin P., Fu C.J., Fu J., Zhou Y.B., Yang Y.Z.	Validating a segment on chromosome 7 of japonica for establishing low-cadmium accumulating indica rice variety.	Sci Rep	11(1)	6053	2021	GCC7,LCD1	HMA3, OsHMA3, OsHMA3a, OsHMA3n, osHMA3, OsHMP34, HMP34,NRAMP5, OsNRAMP5, OsNramp5, OsLCD1
49755	33687498	Kabir M.R., Nonhebel H.M.	Reinvestigation of THOUSAND-grain weight 6 grain weight genes in wheat and rice indicates a role in pollen development rather than regulation of auxin content in grains.	Theor. Appl. Genet.	134(7)	2051-2062	2021	STRL2,TGW6,IAGLU	OsSTRL2, OsSSL1, SSL1,tgw6, OsSTRL7, STRL7, OsSSL4, SSL4,OsIAGLU, OsIAAGLU, IAAGLU, OsIAGT1, IAGT1, UGT74A2, OsUGT74A2
49756	33713137	He Z.D., Tao M.L., Leung D.W.M., Yan X.Y., Chen L., Peng X.X., Liu E.E.	The rice germin-like protein OsGLP1 participates in acclimation to UV-B radiation.	Plant Physiol.			2021	UVR8A,CPD,UVR8B,GER5,PDX1.3B,PIL15,PHRL,_,MSRMK2,_	OsUVR8a, UVR8a, OsRCC1-1, RCC1-1, OsGEF10, GEF10,qUVR-10, OsPHR, PHR, OsCPD,OsUVR8b, UVR8b, OsRCC1-2, RCC1-2, OsGEF9, GEF9,OsGLP1, GLP1, GER1, GLP110, OsGER1, OsGER5, OsGLP8-14, GLP8-14, OsCDP8.14, CDP8.14,OsPDX1.3b, OsPDX1.2, PDX1.2,OsPIL15, OsbHLH105, PIF3, OsPIF3,OsPHRL,OsMPK13, OsMAPK2, OsBIMK2, BIMK2, MPK13, MAPK2, OsMAPK17-2, MAPK17-2,OsMSRMK2, OsMAPK5, OsMAP1, OsMPK3, OsBIMK1, OsMAPK2, MPK5, BIMK1, MAPK2, MAPK5, MPK3, OsMPK5, OsMAPK3, OsMAPK5b, MAPK3,OsMYB4, Osmyb4, OsMyb4, MYB4, OsMYB55, MYB55, OsMyb8, MYB8, OsMYB13b, MYB13b, OsMYB15, MYB15, Os2R_MYB46, 2R_MYB46
49757	33300991	Wang H.Q., Xuan W., Huang X.Y., Mao C., Zhao F.J.	Cadmium Inhibits lateral root Emergence in Rice by Disrupting OsPIN-mediated Auxin Distribution and the Protective Effect of OsHMA3.	Plant Cell Physiol.	62(1)	166-177	2021	PIN1A,YUCCA7,PIN1C,PIN9,PIN1B,GCC7	PIN1C, OsPIN1C, OsPIN1c, OsPIN1a,OsYUCCA7, OsYUC7, OsYUC5, YUC5, YUC7,PIN1B, OsPIN1B, OsPIN1b, OsPIN1c,OsPIN9,PIN1A, OsPIN1A, OsPIN1a, REH1, OsPIN1, OsPIN1b, REH1/OsPIN1,HMA3, OsHMA3, OsHMA3a, OsHMA3n, osHMA3, OsHMP34, HMP34
49758	33713337	Huang C., Zhang J., Zhou D., Huang Y., Su L., Yang G., Luo W., Chen Z., Wang H., Guo T.	Identification and candidate gene screening of qCIR9.1, a novel QTL associated with anther culturability in rice (Oryza sativa L.).	Theor. Appl. Genet.	134(7)	2097-2111	2021	HMGB710	OsHMGB710, OsNFD101, NFD101
49759	33756268	Li Z., Wang B., Zhang Z., Luo W., Tang Y., Niu Y., Chong K., Xu Y.	OsGRF6 interacts with SLR1 to regulate OsGA2ox1 expression for coordinating chilling tolerance and growth in rice.	J. Plant Physiol.	260	153406	2021		
49760	33801226	Choi J., Lee W., An G., Kim S.R.	OsCBE1, a Substrate Receptor of Cullin4-Based E3 Ubiquitin Ligase, Functions as a Regulator of Abiotic Stress Response and Productivity in Rice.	Int J Mol Sci	22(5)		2021	OLE16,CBE1,BURP5,OLE18,UVDDB1,C3H32	ole16, OsEnS-72, OsOLE16,OsWD40-6, OsCBE1,OsBURP05, OsBURP5,ole18, OsOLE18,UV-DDB1, OsUV-DDB1, OsUV-DDB, OsDDB1, DDB1,OsC3H32
49761	33705886	Sharma E., Borah P., Kaur A., Bhatnagar A., Mohapatra T., Kapoor S., Khurana J.P.	A comprehensive transcriptome analysis of contrasting rice cultivars highlights the role of auxin and ABA responsive genes in heat stress response.	Genomics	113(3)	1247-1261	2021	ILL8,DI19-1,_,FBOX396,HOX24,IAA20,IAA13,BZIP12	OsILL8, OsAH4, AH4,OsDi19-1,OsbZIP18,OsFbox396, Os_F0578, OsMsr9, Msr9,  OsFBX257, FBX257,Oshox24, OsHox24, OsSLI1, OsHDZ6, OsHDZIP6, HDZ6, HDZIP6,OsIAA20,OsIAA13, OsIAA1, OsiIAA1,OsbZIP12, OsABF1, ABF1, OsOSE2, OSE2, OsbZIP12/OsABF1
49762	33638214	Guo J., Li W., Shang L., Wang Y., Yan P., Bai Y., Da X., Wang K., Guo Q., Jiang R., Mao C., Mo X.	OsbHLH98 regulates leaf angle in rice through transcriptional repression of OsBUL1.	New Phytol.	230(5)	1953-1966	2021	ILI5,BHLH98	ILI5, OsILI5, PGL2, OsPGL2, Os170, OsBUL1, BUL1, ILI5/PGL2, OsbHLH170, bHLH170,OsbHLH098, bHLH098, bHLH98, OsbHLH98
49763	33615714	Zhang Y., Wang Y., Wang C., Rautengarten C., Duan E., Zhu J., Zhu X., Lei J., Peng C., Wang Y., Teng X., Tian Y., Liu X., Heazlewood J.L., Wu A., Wan J.	BRITTLE PLANT1 is required for normal cell wall composition and mechanical strength in rice.	J Integr Plant Biol	63(5)	865-877	2021	UGE4,UGT3,FC24,UGE1,UGT2	OsUGE4, OsUGE3,OsUGT3,OsUGE2, UGE2, OsFC24, BZ1, OsBZ1, OsBP1, BP1,OsUGE1, OsUGE-1, UGE-1,OsUGT2
49764	33723908	Xu L.H., Xiao L.Y., Xiao Y.N., Peng D.L., Xiao X.Q., Huang W.K., Gheysen G., Wang G.F.	Plasmodesmata play pivotal role in sucrose supply to Meloidogyne graminicola-caused giant cells in rice.	Mol. Plant Pathol.	22(5)	539-550	2021	SUT1,GSL2,SUT5,SUT2,GNS5,SUT4	OsSUT1, OsSUT2,OsGSL2, CalS12-2, OsCalS12-2,OsSUT5(t), OsSUT5Z, OsSUT5,OsSUT2(t), SUT2M, OsSUT2, OsSUT2M, OsSUT5,Gns5, OsGns5,OsSUT4(t), OsSUT4
49765	33693871	Wang M., Hasegawa T., Beier M., Hayashi M., Ohmori Y., Yano K., Teramoto S., Kamiya T., Fujiwara T.	Growth and nitrate reductase activity are impaired in rice OsNLP4 mutantssupplied with nitrate.	Plant Cell Physiol.			2021	SULTR5;2,NLP4,IRT1,NRT2.1,_,IRT2,PSR1,_	OsSultr5;2, OsSul5;2, Os-MOT1;1, OsMOT1;1, MOT1;1, qGMo8, MOT1,OsNLP4, NLP4.1, NLP4.2,OsIRT1, ZIP10, OsZIP10, OsZIP12, ZIP12,OsNRT2.1, OsNRT2.2,OsNR1, NR1, nia1, OsNIA1, NIA1, OsNIA2, NIA2,OsIRT2, OsIRT1, OsZIP15, ZIP15,PSR1, NiR, OsNiR, OsNIR1, NIR1, FD-NiR, OsNiR2,OsNIA1, OsNia1, NIA1, Nia1, OsNR, NR, OsNR2, NR2, NIA2
49766	33724211	Hang D., Yan L., Shunchun L., Lei L., Juanyan W., Zhijie Z., Qichun P., Nan L., Xiangqian Z.	Effect of extensin-like OsPEX1 on pollen fertility in rice.	Yi Chuan	43(3)	271-279	2021		
49767	33742286	Shim J.S., Park S.H., Lee D.K., Kim Y.S., Park S.C., Redillas MCFR., Seo J.S., Kim J.K.	The rice GLYCINE-RICH PROTEIN 3 Confers drought tolerance by Regulating mRNA Stability of ROS Scavenging-Related Genes.	Rice (N Y)	14(1)	31	2021	ATP6,EXO70FX1,_,MTI4C,LEA17,_,_,GRP3,_,_,_	atp6, OsPOX1, prx3, POX1,OsEXO70FX1, OsExo70FX1, OrysaFX1_Exo70, FX1, OsFX1,LOX,MT-1-4b, OsMT1d, MT1d, OsMT-I-4c, MT1c, OsMT1c,OsLEA17, OsLEA3-2, LEA3-2, LEA1,,DOPA,OsGRP3, RTP, RBP-152 ,CCD1, OsCCD1,OsSAMS3, OsSAMS1, SAMS3, SAMS1, SAM2, SAM1,PR5
49768	33799872	Liu Y.H., Jiang M., Li R.Q., Huang J.Z., Shu Q.Y.	OsKEAP1 Interacts with OsABI5 and Its Downregulation Increases the Transcription of <i>OsABI5</i> and the ABA Response Genes in Germinating Rice Seeds.	Plants (Basel)	10(3)		2021	ABI3,ABI2,MFT2,RAB16A,ABI5,BZIP23,LEA17,WSI18,ABI1,LEA4,KEAP1	OsLFL2, LFL2, OsIDEF1, IDEF1, OsABI3,OsPP2C03, PP2C03, OsPP2C3, PP2C3, OsPP7, OsABI2,OsMFT2, OsMFT,Rab16A, rab21, RAB21, OsRab21, OsRAB21, OsRAB-21, OsRab16A, OsLEA29, rab16A, OsRAB16A,OsABI5, OsbZIP10, OsABF1, OREB1, OsABI5-1, OsABI5-2, OsOREB1, OREB1 ,OsbZIP23, OsAREB1, OsABF2, Osbzip23, OsAREB2, OsZIP23, ZIP23,OsLEA17, OsLEA3-2, LEA3-2, LEA1,OsLEA14, OsLEA14a, OsLEA14b, wsi18, pwsi18, OsWsi18, OsLEA14/WSI18,OsPP2C51, PP2C51, OsPP79, PP79, OsABI1,OsLEA4,OsKEAP1, OsNRP2, NRP2
49769	33730215	Wang D., Wang H., Liu Q., Tu R., Zhou X., Zhang Y., Wu W., Yu P., Chen D., Zhan X., Cao L., Cheng S., Shen X.	Reduction of OsMPK6 activity by a R89K mutation induces cell death and bacterial blight resistance in rice.	Plant Cell Rep.	40(5)	835-850	2021	PUB44,CERK1,RLCK304,OPR1,PAL1,PAL1,MAPK4,MPK6,BHLH9,PR10A,PR1A,COI1,PR1B,MAP3,ICS1,CEBIP,AOS2,NH1,SERK1	OsPUB44,OsCERK1, OsLysM-RLK9, Os-CERK1, Os-LysM-RLK9, OsLysMRLK9, OsCERK1/OsLYK9, OsLYK9, LYK9,OsRLCK304, OsBSK1-2, BSK1-2, OsBSK1,OsOPR1, OsOPR2, OsOPR11, OsOPR06-6, OPDAR1, OsOPR, OPDAR,OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6,OsPAL, Pal1*, Pal1, PAL, Pal_1, PalI, PAL2, OsPAL01, PAL01, OSPAL, CP-1, GP-1, OsPAL1, PAL3, OsPAL3,OsMAPK4, OsMAP2, OsMSRMK3, OsMPK4, OsMPK7, MAP2, MSRMK3, MPK4, MPK7, MAPK7, OsMAPK7,OsMPK6, OsDR6, DR6, OsMPK4, MPK4, OsMAPK4, MAPK4,OsbHLH009, bHLH009, OsMYC2, MYC2,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1, OsPR1b, PR1alpha, OsPR1alpha,OsCOI1a, OsCOI1, Os_F0728, COI1a, F0728,  OsFBL4, FBL4,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1, OsPR1a, PR1a,OsMAPK33, OsMPK14, OsMAPK2, OsMAP3, OsMAPK14, OsMPK3, MAPK33, MPK14, MAPK2, MAPK14, MPK3, OsMAPK3, MAPK3,OsICS1, OsICS, ICS,CEBiP, Os-LYP1, LYP1, OsCEBiP,OsAOS2, CYP74A2, OsAOS, OsAOS1,OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2, DLN5, OsDLN5,  OsBTBA1, BTBA1,OsSERK1, OsSERK2, OsBiSERK1, SERK2, BiSERK1, OsSerk2, OsBAK1-2
49770	33794279	Soni P., Shivhare R., Kaur A., Bansal S., Sonah H., Deshmukh R., Giri J., Lata C., Ram H.	Reference gene identification for gene expression analysis in rice under different metal stress.	J. Biotechnol.	332	83-93	2021	OBP,CK1A.3	OsOBP,OsCK1a.3, UCIP10, OsUCIP10, OsCKq1, CKq1
49771	33568286	Chen H., Yu H., Jiang W., Li H., Wu T., Chu J., Xin P., Li Z., Wang R., Zhou T., Huang K., Lu L., Bian M., Du X.	Overexpression of ovate family protein 22 confers multiple morphological changes and represses gibberellin and brassinosteroid signalings in transgenic rice.	Plant Sci.	304	110734	2021		
49772	33854289	Arora K., Rai A.K., Devanna B.N., Dubey H., Narula A., Sharma T.R.	Deciphering the role of microRNAs during <i>Pi54</i> gene mediated <i>Magnaporthe oryzae</i> resistance response in rice.	Physiol Mol Biol Plants	27(3)	633-647	2021	WAK129,NBSGO35,MIR319A,MIR531B,MIR2118O,MIR393,MIR395L,MIR2118L,MIR815C,MIR167C,MIR397A,MIR2100,PIKH,miR159C,MIR812F,MIR397B,MIR439G	OsWAK129, OsRLCK375, RLCK375, OsWAK129b,OsNBSGO35, RPP13,OsmiR319a, Osa-miR319a, osa-MIR319aosa-miR319a osa-miR319a-3p osa-miR319a-3p.2-3p,miR531b, osa-MIR531b,miR2118o, osa-miR2118o, osa-MIR2118o,OsmiR393, osa-MIR393, osa-MIR393a, OsmiR393a, miR393a ,OsmiR395l, miR395l, osa-MIR395l,miR2118l, osa-miR2118l, osa-MIR2118l,miR815c, osa-miR815c, osa-MIR815c, OsmiR815c,miR167c, osa-miR167cosa-miR167c-3p osa-miR167c-5p,miR397a, osa-miR397a, osa-MIR397a, OsmiR397a,miR2100, osa-miR2100, osa-MIR2100,Pi-kh, Pi k-h, Pi54, Pi54rh, Pi-k(h), Pik-h, Pikh,OsmiR159c, osa-MIR159c,miR812f, osa-miR812f, osa-MIR812f,miR397b, osa-miR397b, osa-MIR397b, miR397b*, OsmiR397b, Os-MIR397b,miR439g, osa-MIR439g
49773	33756348	Rubbab T., Pegg C.L., Phung T.K., Nouwens A.S., Yeo K.Y.B., Zacchi L.F., Muhammad A., Naqvi S.M.S., Schulz B.L.	N-glycosylation on Oryza sativa root germin-like protein 1 is conserved but not required for stability or activity.	Biochem. Biophys. Res. Commun.	553	72-77	2021		
49774	33806035	Ma C., Hao Y., Zhao J., Zuverza-Mena N., Meselhy A.G., Dhankher O.P., Rui Y., White J.C., Xing B.	Graphitic Carbon Nitride (C3N4) Reduces Cadmium and Arsenic Phytotoxicity and Accumulation in Rice (<i>Oryza sativa</i> L.).	Nanomaterials (Basel)	11(4)		2021	NRAMP6,LCD1,GCC7,PT4,HMA2,LSI6,NIP1;1,LSI1,IRT1,LSI2	OsNRAMP6, Nramp6, l-NRAMP6, s-NRAMP6, OsNramp6.8, OsNramp1,NRAMP5, OsNRAMP5, OsNramp5, OsLCD1,HMA3, OsHMA3, OsHMA3a, OsHMA3n, osHMA3, OsHMP34, HMP34,OsPT4, PHT1-4, OsPht1;4, PHT1-2, PHT1;4, OsPHT1;4,OsHMA2, osHMA2, OsHMA2v ,Lsi6, OsNIP2;2, NIP2-2, OsLsi6, OsNIP2.2/OsLsi6, OsNIP2.2, NIP2.2,OsNIP1;1, NIP1-1, rMIP1, MIP1, OsNIP1.1, NIP1.1,lsi1, NIP2-1, OsNIP2;1, NIP2;1, OsLsi1, lsi(t), OsNIP2.1/OsLsi1/OsSIIT1, OsNIP2.1, NIP2.1,OsIRT1, ZIP10, OsZIP10, OsZIP12, ZIP12,Lsi2, SIET1, OsLsi2, OsSIET1
49775	33677712	Chen J.F., Zhao Z.X., Li Y., Li T.T., Zhu Y., Yang X.M., Zhou S.X., Wang H., Zhao J.Q., Pu M., Feng H., Fan J., Zhang J.W., Huang Y.Y., Wang W.M.	Fine-Tuning Roles of Osa-miR159a in Rice Immunity Against Magnaporthe oryzae and Development.	Rice (N Y)	14(1)	26	2021	PR10B,MIR159A,GAMYBL1,NAC4,SH11,GAMYB,ZF	RPR10b, PR-10b, PR10b, PBZ1, PBZ-1, OsPBZc, OsPR10b, BetV, OsBetV,miR159a, osa-miR159a, osa-MIR159a, OsmiR159a, OsmiR159a.2, miR159a.2, OsmiR159a.1, miR159a.1, osa-miR159a.1, osa-miR159a.2,OsGAMYBL1, OsMYB80, MYB80, Os2R_MYB66, 2R_MYB66,OsNAC4, NAC68, ONAC068, OnNAC4*, OnNAC4, OsNAC4/ONAC068,OsJAmyb, JAmyb, OsJAMyb, OsMYB21, MYB21, Os2R_MYB91, 2R_MYB91, OgSH11, OsSH11,OsGAMYB, GAM1, OsGAMyb, Os-MYBGA, Os GAMYB, OsMYBGA, MYBGA, Os2R_MYB15, 2R_MYB15 ,OsZF,  OsRING28, RING28
49776	33846264	Pan L., Yu Q., Wang J., Han H., Mao L., Nyporko A., Maguza A., Fan L., Bai L., Powles S.	An ABCC-type transporter endowing glyphosate resistance in plants.	Proc. Natl. Acad. Sci. U.S.A.	118(16)		2021	MRP11	OsABCC11, ABCC11, OsMRP11, OsABCC8
49777	33892070	Moin M., Saha A., Bakshi A., Madhav M.S., Kirti P.B.	Constitutive expression of Ribosomal Protein L6 modulates salt tolerance in rice transgenic plants.	Gene	789	145670	2021		
49778	33927398	Ma B., Zhang L., Gao Q., Wang J., Li X., Wang H., Liu Y., Lin H., Liu J., Wang X., Li Q., Deng Y., Tang W., Luan S., He Z.	A plasma membrane transporter coordinates phosphate reallocation and grain filling in cereals.	Nat. Genet.	53(6)	906-915	2021	AGPS2,AGPL2,PHO1;2	OsAGPS2a, AGPS2A, AGPS2B, OsAGPS2, osagps2, APS2, APS2a, APS2b, AGPS2a, APGS2b, OsAGPS2b, AGPP, GAS8, OsAPS2, OsAPS2a, OsAPS2b,OsAGPL2, osagpl2, APL2, OsAPL2, AGPiso, sh2, Sh2, GIF2, GAS1 ,OsPHO1;2, PHO1.2, OsPHO1.2, PHO1
49779	33785601	Torabi S.F., Chen Y.L., Zhang K., Wang J., DeGregorio S.J., Vaidya A.T., Su Z., Pabit S.A., Chiu W., Pollack L., Steitz J.A.	Structural analyses of an RNA stability element interacting with poly(A).	Proc. Natl. Acad. Sci. U.S.A.	118(14)		2021	TWIFB1	OsTWIFB1
49780	33793769	Kitaoka N., Zhang J., Oyagbenro R.K., Brown B., Wu Y., Yang B., Li Z., Peters R.J.	Interdependent evolution of biosynthetic gene clusters for momilactone production in rice.	Plant Cell	33(2)	290-305	2021	CYP76M6,MAS,KS4,CYP99A2,KO5,SDR110C-MS2,CYP76M8,CYP76M7,CYP76M5,CPS4,CYP99A3,KO4,CYP76M17	OsCYP76M6, OsCYP76-5, CYP76-5, OsCYP71T5, CYP71T5,OsMAS, MAS1, OsMAS1, OsMAS/SDR110C-MS1, SDR110C-MS1, OsSDR110C-MS1, OsMS1, MS1,OsKS4, KS4, KSL4, OsKSL4, DTS2, OsDTS2, OsTPS16, TPS16, TPS8, OsTPS8,OsCYP99A2,OsKO5, OSKOL5, KOS2, OsKOS2, CYP701A9, OsCYP701A9, OsKO1, KO1,OsSDR110C-MS2, OsMAS1, MAS1, OsMS2, MS2, MAS2,OsCYP76M8, OsCYP76-3, CYP76-3,OsCYP76M7, CYP76M10, OsCYP76M10, OsCYP76-4, CYP76-4,OsCYP76M5, OsCYP76-2, CYP76-2, OsCYP71T4, CYP71T4,OsCPS4, CYC1, OsCYC1, OsCyc1, cpsl3, OsCPSL3, OsCPSsyn, OsCyc1/OsCPS4, OsTPS15, Os-CPS4, TPS11, OsTPS11,OsCYP99A3,OsKO4, OsKOL4, KOS1, CYP701A8, OsCYP701A8, OsKO2, CYP701A8/OsKOL4,OsCYP76M17, OsTyM/Hq6, TyM/Hq6, OsCYP76-8, CYP76-8
49781	33901411	Luo Y., Wang T., Yang D., Luo B., Wang W.P., Yu D., He F.L., Wang Q.M., Rao L.Q.	Identification and characterization of heat-responsive microRNAs at the booting stage in two rice varieties, 9311 and Nagina 22.	Genome		1-16	2021		
49782	33853950	Zhang C., He J., Dai H., Wang G., Zhang X., Wang C., Shi J., Chen X., Wang D., Wang E.	Discriminating symbiosis and immunity signals by receptor competition in rice.	Proc. Natl. Acad. Sci. U.S.A.	118(16)		2021	PR10A,JIOSPR10,CEBIP,CHT1,_,CERK1,LYK5	PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,JIOsPR10, OsPR10, PR10, OsJiPR10, JiPR10, OsPR10c, PR10c,CEBiP, Os-LYP1, LYP1, OsCEBiP,Cht1*(Chi1), Ch16, Cht1, CHT-1, CH16, RC24, OsChia1a, OsChia1, Chi1, Cht1*, Chi-1, Cht-1, Cht1, RCC1, OsCht-1, PR3, OsPR3,OsRacGEF1, RacGEF1, OsGEF1,OsCERK1, OsLysM-RLK9, Os-CERK1, Os-LysM-RLK9, OsLysMRLK9, OsCERK1/OsLYK9, OsLYK9, LYK9,OsLysM-RLK2, LysM-RLK2, OsLYK5, OsNFR5, NFR5, OsMYR1/OsLYK2, OsMYR1, OsLYK2, MYR1, LYK2, NFR5/MYR1
49783	33487216	Ni E., Deng L., Chen H., Lin J., Ruan J., Liu Z., Zhuang C., Zhou H.	OsCER1 regulates humidity-sensitive genic male sterility through very-long-chain (VLC) alkane metabolism of tryphine in rice.	Funct. Plant Biol.	48(5)	461-468	2021		
49784	33915009	Kinoshita N., Irving L.J., Lustig B., Furukawa J.	Effects of nitrogen on caesium allocation in rice plants (Oryza sativa).	Plant Biol (Stuttg)			2021	AKT1,TPKA	OsAKT1, Os-AKT1,TPKa, OsTPKa, OsTpka, TPK1a, OsTPK1a
49785	33845181	T?vora FTPK., Bevitori R., Mello R.N., Cintra MMDF., Oliveira-Neto OB., Fontes W., Castro M.S., Sousa M.V., Franco O.L., Mehta A.	Shotgun proteomics coupled to transient-inducible gene silencing reveal rice susceptibility genes as new sources for blast disease resistance.	J Proteomics	241	104223	2021		
49786	33845208	Peng Q., Zhu C., Liu T., Zhang S., Feng S., Wu C.	Phosphorylation of OsFD1 by OsCIPK3 promotes the formation of RFT1-containing florigen activation complex for long-day flowering in rice.	Mol Plant	14(7)	1135-1148	2021		
49787	33924151	Wu F., Luo X., Wang L., Wei Y., Li J., Xie H., Zhang J., Xie G.	Genome-Wide Association Study Reveals the QTLs for Seed Storability in World Rice Core Collections.	Plants (Basel)	10(4)		2021	PIMT1,GH3-2	OsPIMT1, OsPIMT1',OsGH3-2, OsGH3.2, GH3.2
49788	33866432	Dash M., Somvanshi V.S., Budhwar R., Godwin J., Shukla R.N., Rao U.	A rice root-knot nematode Meloidogyne graminicola-resistant mutant rice line shows early expression of plant-defence genes.	Planta	253(5)	108	2021	CPS2,_,SDR110C-MI3 ,WAK125,_,RYMV3,PR10A,CHIB1,CHT9,RLCK370,KS4,CDPK21,USP2,WRKY125,AOS3,RPS2,_,_,_,_,CYP76M8,MPKK5,CYP76M5,RMP8,PIZT,RLCK353,_,_,RPM1,_,_,RPP13L4,CYP76M6,_	OsCPS2, cps2, OsCPS2ent, CYC2, OsCyc2, OsCYC2, OsCPSL1, cpsl1, OsCyc2/OsCPS2, OsTPS7, Os-CPS2, TPS13, OsTPS13,,OsSDR110C-MI3,OsWAK125, OsRLCK368, RLCK368, OsWAK-RLP,,OsRYMV3,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,Oschib1, chib1, PR-8, PR8, OsPR8, OsPR8b, PR8b,Cht9, OsCht9, Cht1, OsChi19A, Chi19A,OsRLCK370,OsKS4, KS4, KSL4, OsKSL4, DTS2, OsDTS2, OsTPS16, TPS16, TPS8, OsTPS8,OsCDPK21, OsCPK21, CPK21, CPK-21,OsUSP2,OsWRKY125,OsAOS3, HPL2, OsHPL2, OsAOS3/OsHPL2,OsRPS2,,,OsPR1, OsPR1a, PR1a, PR1, OsPR1b, PR1b,,OsCYP76M8, OsCYP76-3, CYP76-3,OsMPKK5,OsCYP76M5, OsCYP76-2, CYP76-2, OsCYP71T4, CYP71T4,OsRMP8,Piz-t, Pi-zt, Pi-z(t), Pi2/Pizt, Pizt, Pi9, OsPiz-t,OsRLCK353,,,OsRPM1, RPM-1,,,OsRPP13L4,OsCYP76M6, OsCYP76-5, CYP76-5, OsCYP71T5, CYP71T5,
49789	33881659	Cao Y., Zhang Y., Chen Y., Yu N., Liaqat S., Wu W., Chen D., Cheng S., Wei X., Cao L., Zhang Y., Liu Q.	OsPG1 Encodes a Polygalacturonase that Determines Cell Wall Architecture and Affects Resistance to Bacterial Blight Pathogen in Rice.	Rice (N Y)	14(1)	36	2021	POX3006,PR5,PR1B,PSL1,TIFY11D	POX3006, prx114, Osprx114, PO-C1, POC-1, POC1, OsPOC1, Prx14, OsPrx14, POD3006, OsPOD3006,OsPR5, Pir2, PR-5, PR5-1,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1, OsPR1a, PR1a,OsPGL13, PGL13, OsPSL1, OsPG1, PG1, LTN-212,OsTIFY11d, OsJAZ1, JAZ1, OsJAZ 12, OsJAZ12, JAZ12
49790	33896383	Kim Y.J., Kwak J.S., Dae Hwan K., Song J.T., Seo H.S.	Mutation of the <i>OsGlyRS3</i> gene affects heading date in rice.	Plant Signal Behav	16(7)	1913366	2021	MADS51,HD3A,SE1,GLYRS1,GLYRS3	OsMADS51, OsMADS65, MADS65, qHd1, DLN36, OsDLN36,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, OsHd1,  Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,OsGlyRS1, GlyRS1,OsGlyRS3, GlyRS3
49791	33617633	Li J., Li N., Zhu L., Zhang Z., Li X., Wang J., Xun H., Zhao J., Wang X., Wang T., Wang H., Liu B., Li Y., Gong L.	Mutation of a major CG methylase alters genome-wide lncRNA expression in rice.	G3 (Bethesda)	11(4)		2021	MET1B	OsMET1b, OsMET1-2, MET1b, MET1
49792	33923918	Maghrebi M., Baldoni E., Lucchini G., Vigani G., Val? G., Sacchi G.A., Nocito F.F.	Analysis of Cadmium Root Retention for Two Contrasting Rice Accessions Suggests an Important Role for <i>OsHMA2</i>.	Plants (Basel)	10(4)		2021	GCC7,HMA2	HMA3, OsHMA3, OsHMA3a, OsHMA3n, osHMA3, OsHMP34, HMP34,OsHMA2, osHMA2, OsHMA2v 
49793	33881644	Meng L., Qi C., Wang C., Wang S., Zhou C., Ren Y., Cheng Z., Zhang X., Guo X., Zhao Z., Wang J., Lin Q., Zhu S., Wang H., Wang Z., Lei C., Wan J.	Determinant Factors and Regulatory Systems for Anthocyanin Biosynthesis in Rice Apiculi and Stigmas.	Rice (N Y)	14(1)	37	2021	RD,PA,C,PS	Rd, DFR, OsDFR, OS-DFR, OsDFR1, DFR1, DFR-1,OsbHLH015, OsbHLH15, bHLH15, OsGL3B, GL3B, OsMYC6, MYC6, OsPa, Pa, OsHLH2, HLH2,C, Cp, OsC1, Os-C1, C1, OsMyb6, Myb6, OsPL6, PL6, OsGL1E, GL1E, Os2R_MYB63, 2R_MYB63, OsC1PLSr, C1PLSr,Ra*, bhlh13, OsbHLH013, OsbHLH13, Ra, OSB1, Ra1, OsGL3A, GL3A, OsB2, OsMYC7, MYC7, OsPs, Ps, OsHLH1, HLH1
49794	33876435	Iwamoto M., Tsuchida-Mayama T., Ichikawa H.	The transcription factor gene RDD4 contributes to the control of nutrient ion accumulation in rice.	Physiol Plant	172(4)	2059-2069	2021	_,RDD4,FWL6,FWL4,FWL3,FWL2,FWL8,FWL7	OsFWL, FWL,OsDof12, Dof12, OsDof-12, OsCDF1, OsCDF1/OsDOF12, OsDOF12, CDF1, DOF12, OsDof11, Dof11,OsFWL6, OsCNR10, CNR10, OsFWL5/OsPCR1, OsFWL5, OsPCR1, FWL5, PCR1 ,OsFWL, FWL, OsFWL4/OsPCR6, OsFWL4, OsPCR6, PCR6,OsFWL3, OsFWL2/OsPCR5, OsFWL2, OsPCR5, FWL2, PCR5,OsFWL2, OsPCR1, PCR1, OsFWL1, FWL1,OsFWL8,OsFWL7, PGPS/D12, PGPS, D12, OsFWL6, FWL6
49795	33902444	Chen Z., Zhou L., Jiang P., Lu R., Halford N.G., Liu C.	Genome-wide identification of sucrose nonfermenting-1-related protein kinase (SnRK) genes in barley and RNA-seq analyses of their expression in response to abscisic acid treatment.	BMC Genomics	22(1)	300	2021	SOS2,CIPK23,CIPK16,CIPK32,SAPK8,SNRK2.11,CIPK07,CIPK05,CIPK30,OSK4,CK1,CIPK25,CIPK26,CIPK21,CIPK15,CIPK14,CIPK01,CIPK11,SNRK1B,CIPK28,_,CIPK03,SAPK3,OSK1,SAPK9,SAPK1,PK7,SNRK3.19,CIPK33,CIPK08,SAPK2,SAPK7,OSK3,CIPK02,SAPK4,SAPK5,CIPK04,CIPK13,CIPK27,SAPK6,CIPK10,CIPK20,SAPK10,CIPK18,CIPK22,CIPK17,CIPK06,CIPK29,CIPK09,PK4	CIPK24, OsCIPK24, OsSOS2, OsSnRK3.22, SnRK3.22,OsCIPK23, Os-CIPK23, OsSnRK3.23, SnRK3.23,OsCIPK16, OsSnRK3.29, SnRK3.29,OsCIPK32, OsSnRK3.34, SnRK3.34,OsSAPK8, OsSnRK2.8, SnRK2.8,OsSnRK2.11, SnRK2.11,OsCIPK07, CIPK7, OsCIPK7, OsSnRK3.13, SnRK3.13,OsCIPK05, CIPK5, OsCIPK5, OsSTA7, OsSnRK3.2, SnRK3.2,OsCIPK30, OsSnRK3.5, SnRK3.5,osk4, OsK4, OsATG1c, ATG1C, SnRK1B, snrk1b, SnRK1B/OSK24, OSK24, OsK24, OsSNRK1b, OsSnRK1.4, SnRK1.4, OsSnRK1alphaC, SnRK1alphaC,OsCK1, CIPK31, OsCIPK31, Os-CIPK3, OsSnRK3.11, SnRK3.11,OsCIPK25, OsSnRK3.21, SnRK3.21,OsCIPK26, OsSnRK3.8, SnRK3.8,OsCIPK21, OsSnRK3.24, SnRK3.24,OsCIPK15, OsSnRK3.31, SnRK3.31,OsCIPK14, OsSnRK3.33, SnRK3.33,OsCIPK01, CIPK1, OsCIPK1, OsSnRK3.3, SnRK3.3,OsCIPK11, OsMSURPK2, MSURPK2, OsSnRK3.7, SnRK3.7,SnRK1B, OsSnRK1B, OsSnRK1.3, SnRK1.3, OsSnRK1alphaD, SnRK1alphaD,OsCIPK28, OsSnRK3.18, SnRK3.18,SnRK1, OsSnRK1, OsSnRK3.9, SnRK3.9,OsCIPK03, CIPK3, OsCIPK3, OsSnRK3.27, SnRK3.27,OsSAPK3, REK, OsSnRK2.3, SnRK2.3,osk1, SnRK1A, OsSnRK1A, OsSNRK1a, SnRK1A/OSK1, SnRK1a, OsSnRK1.2, SnRK1.2, OsSnRK1alphaA, SnRK1alphaA,OsSAPK9, OsSnRK2.9, SnRK2.9,OsSAPK1, OsSnRK2.1, SnRK2.1,OsPK7, OsPK07, OsCIPK12, CIPK12, OsSnRK3.6, SnRK3.6,OsSnRK3.19, SnRK3.19,OsCIPK33, OsSnRK3.32, SnRK3.32,OsCIPK08, CIPK8, OsCIPK8, OsSnRK3.4, SnRK3.4,OsSAPK2, OsSnRK2.2, SnRK2.2,OsSAPK7, OsSnRK2.7, SnRK2.7,osk3, OsATG1b, ATG1B, OSK5, osk5, OSK35, SnRK1b, OsK35, OsSnRK1.1, SnRK1.1, OsSnRK1alphaB, SnRK1alphaB,OsCIPK02, CIPK2, OsCIPK2, OsSnRK3.26, SnRK3.26,OsSAPK4, OsSnRK2.4, SnRK2.4,OsSAPK5, OsSnRK2.5, SnRK2.5,OsCIPK04, CIPK4, OsCIPK4, OsSnRK3.35, SnRK3.35,OsCIPK13, OsSnRK3.1, SnRK3.1,OsCIPK27, OsSnRK3.30, SnRK3.30,OsSAPK6, OSRK1, OsSnRK2.6, SnRK2.6,OsCIPK10, OsSnRK3.12, SnRK3.12,OsCIPK20, OsSnRK3.15, SnRK3.15,OsSAPK10, OsSnRK2.10, SnRK2.10,OsCIPK18, OsSnRK3.16, SnRK3.16,OsCIPK22, OsSnRK3.17, SnRK3.17,OsCIPK17, OsSnRK3.14, SnRK3.14,OsCIPK06, CIPK6, OsCIPK6, OsSnRK3.28, SnRK3.28,OsCIPK29, OsSnRK3.25, SnRK3.25,OsCIPK09, CIPK9, OsCIPK9, OsSnRK3.10, SnRK3.10,OsCIPK19, OsPK4, OsPK04, Os-CIPK19, CIPK19, OsSnRK3.20, SnRK3.20
49796	33476364	Ren Y., Huang Z., Jiang H., Wang Z., Wu F., Xiong Y., Yao J.	A heat stress responsive NAC transcription factor heterodimer plays key roles in rice grain filling.	J. Exp. Bot.	72(8)	2947-2964	2021	SWEET4,SWEET15,HSP101,MST6,NAC127,ERF102,CML31,HCI1,XA13,NAC129	OsSWEET4,OsSWEET15,Oshsp101, OsHSP101, ClpB-cyt, OsClpB-cyt, ClpB-C/Hsp100, OsClpB-C,OsMST6, STP6, OsSTP6,ONAC127, OsNAC127, OsEnS-145,OsERF#102, OsERF102, AP2/EREBP#123, AP2/EREBP123, OsEATB, EATB,OsCML31, OsMSR2, MSR2,OsHCI1, E3UL, OsRING206, RING206,xa13, Xa13, Os8N3, Os-8N3, 8N3, OsSWEET11, SWEET11, OsSWEET11/Xa13, Xa13/Os8N3/SWEET11, Os8N3/Xa13, OsSWEET11/Os8N3, OsSWEET11a, SWEET11a,ONAC129, OsNAC129 
49797	33793908	Xu X., E Z., Zhang D., Yun Q., Zhou Y., Niu B., Chen C.	OsYUC11-mediated auxin biosynthesis is essential for endosperm development of rice.	Plant Physiol.	185(3)	934-950	2021	HAP3K,YUCCA11,GH3-2,TAR1,GH3-4,PIN5B,YUCCA12,YUCCA9	OsHAP3K/OsNF-YB1, OsHAP3K, OsNF-YB1, NF-YB1, nf-yb1, OsLEC1, OsNF-YB-1, NFYB1, OsEnS-41,OsYUCCA11, OsYUC11, YUC11,OsGH3-2, OsGH3.2, GH3.2,OsTAR1, FBL,OsGH3-4, OsGH3.4, GH3.4,PIN5C, OsPIN5c, OsPIN5b, PIN4,OsYUCCA12, OsYUC12, YUC12,OsYUCCA9, OsYUC9, YUC9
49798	33721364	Niu B., Zhang Z., Zhang J., Zhou Y., Chen C.	The rice LEC1-like transcription factor OsNF-YB9 interacts with SPK, an endosperm-specific sucrose synthase protein kinase, and functions in seed development.	Plant J.	106(5)	1233-1246	2021	SBE3,SPK,SUT1,AGPL1,SBE1,AGPS2,HAP3D,PUL,FLO5,LEC1,ISA2,SSI	SBEIII*, SBEIII, Sbe3, RBE3, QEIIa, QEIIA, BEIIb, BEIIB, SBEIIb, OsBEIIb, sbe3, SBE III, OsSBEIIb, SBEIIb,CDPK 1, CDPK1, CDPK23, OsCDPK23, OsCPK23, CPK23, OsSPK,OsSUT1, OsSUT2,OsAGPL1, OsAPL1, APL1, OsAGPL3, AGPL3, OsAGPSL3, AGPSL3,sbe1, Rbe1. Sbe1, sbe1*(QEI), RBE1, BEI, SBE I, QEI, OsBEI, BE1, OsSBE1, OsSBEI, SBEI,OsAGPS2a, AGPS2A, AGPS2B, OsAGPS2, osagps2, APS2, APS2a, APS2b, AGPS2a, APGS2b, OsAGPS2b, AGPP, GAS8, OsAPS2, OsAPS2a, OsAPS2b,OsHAP3D, OsEnS-83, OsNF-YB9, NF-YB9, NFYB9, OsLEC1A, LEC1A,OsPUL, SDBE, OsPUL3, RE,OsSSIIIa, SSIII-2, OsSSIII-2, OsSS3A, SS3A, SS3a, OsSSSIIIa, SSIIIa, Flo5,OsHAP3E, HAP3E, OsLEC1/OsHAP3E, OsLEC1, LEC1, OsNF-YB7, NF-YB7, NFYB7, L1L ,OsISA2, ISA II, OsISA II,OsSSI, SSS 1, SSS1, SS1, OsSS1, SSSI, OsSSSI
49799	33793928	Fang J., Guo T., Xie Z., Chun Y., Zhao J., Peng L., Zafar S.A., Yuan S., Xiao L., Li X.	The Url1-ROC5-TPL2 transcriptional repressor complex represses the ACL1 gene to modulate leaf rolling in rice.	Plant Physiol.	185(4)	1722-1744	2021	ACL1,URL1,ASP1,OUL1	OsACL1, ACL2, OsACL2,ROC8, Roc8(t), Roc8, OsROC8, GL2-8, CRM1, OsCRM1, Os URL1, OsHDZ20, OsHDZIP20, HDZ20, HDZIP20,OsLIS-L1, OsWD40-155, ASP1, TPR2, OsTPR2, OsREL2, REL2, OsTPL3, TPL3, OsTPL2, TPL2, ASP-LSL,ROC5, Roc5(t), Roc5, GL2-5, OsROC5, CLF1, OsCLF1, OsOUL1, OsHDZ7, OsHDZIP7, HDZ7, HDZIP7
49800	33544818	Xu X., Xu Z., Ma W., Haq F., Li Y., Shah S.M.A., Zhu B., Zhu C., Zou L., Chen G.	TALE-triggered and iTALE-suppressed Xa1-mediated resistance to bacterial blight is independent of rice transcription factor subunits OsTFIIAgamma1 or OsTFIIAgamma5.	J. Exp. Bot.	72(8)	3249-3262	2021	XA5,TFIIAGAMMA1,XA13,XA1	xa5, xa-5, Xa5, TFIIAy, OsTFIIAgamma5, TFIIAgamma5, OsTFIIAgamma5/Xa5,OsTFIIAgamma1, OsTFIIAc-1, TFIIAc-1, TFIIAgamma-1,xa13, Xa13, Os8N3, Os-8N3, 8N3, OsSWEET11, SWEET11, OsSWEET11/Xa13, Xa13/Os8N3/SWEET11, Os8N3/Xa13, OsSWEET11/Os8N3, OsSWEET11a, SWEET11a,Xa1(Xe), Xe, Xa1, Xa-1
49801	34034863	Zhang A., Yang X., Lu J., Song F., Sun J., Wang C., Lian J., Zhao L., Zhao B.	OsIAA20, an Aux/IAA protein, mediates abiotic stress tolerance in rice through an ABA pathway.	Plant Sci.	308	110903	2021		
49802	33864842	Manuka R., Saddhe A.A., Srivastava A.K., Kumar K., Penna S.	Overexpression of rice OsWNK9 promotes arsenite tolerance in transgenic Arabidopsis plants.	J. Biotechnol.	332	114-125	2021		
49803	33925652	Jiang J., Yang G., Xin Y., Wang Z., Yan W., Chen Z., Tang X., Xia J.	Overexpression of <i>OsMed16</i> Inhibits the Growth of Rice and Causes Spontaneous Cell Death.	Genes (Basel)	12(5)		2021	PR1B,MSRMK2,PR10A,D3,PDIL1-1,CYP93G2,CYP71Z2,SFR6,PAL1,PR1A,HAN1,NLS1,APX2,WRKY45,_	OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1, OsPR1a, PR1a,OsMSRMK2, OsMAPK5, OsMAP1, OsMPK3, OsBIMK1, OsMAPK2, MPK5, BIMK1, MAPK2, MAPK5, MPK3, OsMPK5, OsMAPK3, OsMAPK5b, MAPK3,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,d3, dwf3, D3/OsMAX2, Os_F0760, SOL1, OsORE9, ORE9, MAX2, OsRFPH2-10, RFPH2-10, OsD3,  OsFBL27, FBL27,OsPDIL1;1, PDIL1;1, PDIL 1-1, PDI, OsPDIL1-1, OsTrx28, Trx28,OsCYP93G2, OsF2H, F2H, OsCYP71S1, CYP71S1,Oscyp71Z2,OsMed16_1, Med16_1, OsSFR6, OsMED16, MED16,OsPAL, Pal1*, Pal1, PAL, Pal_1, PalI, PAL2, OsPAL01, PAL01, OSPAL, CP-1, GP-1, OsPAL1, PAL3, OsPAL3,OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1, OsPR1b, PR1alpha, OsPR1alpha,OsHAN1, OsCYP94B4, CYP94B4,OsNLS1,OsAPX2, OsAPx02, APXb, OsAPx2, OSAPX2, APx2, cAPX, OsAPX1, APX1,OsWRKY45, OsWRKY45-1, OsWRKY45-2, WRKY45-1, WRKY45-2,OsF5H1, F5H1, OsCAld5H1, CAld5H1, CYP84A5, OsCYP84A5
49804	33836080	Zu X., Lu Y., Wang Q., La Y., Hong X., Tan F., Niu J., Xia H., Wu Y., Zhou S., Li K., Chen H., Qiang S., Rui Q., Wang H., La H.	increased drought resistance 1 Mutation Increases drought tolerance Of Upland Rice By Altering Physiological And Morphological Traits And Limiting ROS Levels.	Plant Cell Physiol.			2021		
49805	33919349	Huang K., Wu T., Ma Z., Li Z., Chen H., Zhang M., Bian M., Bai H., Jiang W., Du X.	Rice Transcription Factor OsWRKY55 Is Involved in the Drought Response and Regulation of Plant Growth.	Int J Mol Sci	22(9)		2021	ERF48,_,ZFP15,MPK20-1,DLN24,MPK7,ERF77,MPK9,AP2/EREBP129,WRKY55,FBOX516,MYB48,_,WJUMK1	OsERF#048, OsERF048, OsERF48, AP2/EREBP#170, AP2/EREBP170, OsDRAP1, DRAP1, OsERF48/OsDRAP1,,  OsRING327, RING327,ZFP 15, OsZFP15,OsMPK20-1, OsMAPK10, MAPK10,OsRFP, OsDLN24,  OsRING179, RING179,OsMPK7, OsMAPK44, MAPK44, OsMAPK20-5, MAPK20-5,OsAP2-39, AP2-39, OsERF#077, OsERF077, OsERF77, AP2/EREBP#149, AP2/EREBP149, DLN121, OsDLN121,OsMPK9,AP2/EREBP#129, OsRAV2, RAV2, OsRAV9/OsTEM1, OsRAV9/OsTEM1, OsRAV9, OsTEM1, RAV9, TEM1,OsWRKY55,OsFbx352, OsFbox516, Fbx352, Fbox516, Os_F0046,  OsFBX352, FBX352,OsMYB48, OsMYB48-1, OsMYB48-2, OsMYB59, MYB59, Os2R_MYB19, 2R_MYB19 ,WZF1, OsWZF1, DLN99, OsDLN99, OsZFP1, ZFP1,OsMPK20-4, MPK20-4, OsWJUMK, OsWJUMK1, WJUMK, MAPK8, OsMPK8, MPK8, OsMAPK20-4, MAPK20-4, OsMPKG1, MPKG1
49806	33913048	Li N., Yang Z., Li J., Xie W., Qin X., Kang Y., Zhang Q., Li X., Xiao J., Ma H., Wang S.	Two VQ Proteins are Substrates of the OsMPKK6-OsMPK4 Cascade in Rice Defense Against Bacterial Blight.	Rice (N Y)	14(1)	39	2021	VQ7,VQ8,VQ3,VQ22,VQ6,MPK6,VQ32,VQ16,VQ29,ICS1,VQ27,VQ12,VQ26,VQ18,VQ24,VQ39,VQ28,VQ19,PR10A,VQ35,VQ1,VQ30,VQ10,VQ38,VQ4,VQ15,PAL1,VQ21,VQ36,VQ31,VQ33,VQ34,VQ23,VQ5,VQ2,VQ11,VQ14,VQ37,VQ25,MKK6,VQ13,VQ17,VQ40,VQ20,VQ9	OsVQ7,OsVQ8,OsVQ3,OsVQ22,OsVQ6,OsMPK6, OsDR6, DR6, OsMPK4, MPK4, OsMAPK4, MAPK4,OsVQ32,OsVQ16,OsVQ29,OsICS1, OsICS, ICS,OsVQ27,OsVQ12,OsVQ26,OsVQ18,OsVQ24,OsVQ39,OsVQ28,OsVQ19,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsVQ35,OsVQ1,OsVQ30,OsVQ10,OsVQ38,OsVQ4,OsVQ15,OsPAL, Pal1*, Pal1, PAL, Pal_1, PalI, PAL2, OsPAL01, PAL01, OSPAL, CP-1, GP-1, OsPAL1, PAL3, OsPAL3,OsVQ21,OsVQ36,OsVQ31,OsVQ33,OsVQ34,OsVQ23,OsVQ5,OsVQ2,OsVQ11,OsVQ14,OsVQ37,OsVQ25,OsMKK6, OsMEK1, MEK1, OsMAPKK6, MAPKK6, OsMPKK6, MPKK6, OsMAP1, MAP1,OsVQ13,OsVQ17,OsVQ40,OsVQ20,OsVQ9
49807	33884735	Zhou W., Li Z., Zhang J., Mou B., Zhou W.	The OsIME4 gene identified as a key to meiosis initiation by RNA in situ hybridization.	Plant Biol (Stuttg)			2021	CDC20.1,TAD1,PIS1,WD40-109,RB1,MTA2,CCS52B,_	OsWD40-51, OsCDC20.1, WD40-51, CDC20.1, CDC20.2, OsCDC20.2,  OsCDC20-3, CDC20-3, OsCDC20A, CDC20A,TAD1, OsCCS52A, TE, OsWD40-61, TAD1/TE, CCS52A1 ,  OsCCS52A1/TE/TAD1, CCS52A1/TE/TAD1, OsCDH1A, CDH1A,Orysa;Rb2, RBR2, OsRBR1, RBR1, OsPIS1, RB2, OsRB2, RB1, OsRB1,OsWD40-109, OsCDC20, CDC20, CDC20.1, OsCDC20.1,  OsCDC20-2, CDC20-2, OsCDC20B, CDC20B,Orysa;Rb1, OsRBR1, RBR1, OsRBR2, RBR2,OsMTA2, OsIME4, IME4, OsMTB, MTB,OsWD40-33, WD40-33, OsCCS52B,  OsCCS52B, CCS52B, OsCDH1B, CDH1B,
49808	33919786	Wang S., Sun S., Guo R., Liao W., Shou H.	Transcriptomic Profiling of Fe-Responsive lncRNAs and Their Regulatory Mechanism in Rice.	Genes (Basel)	12(4)		2021	Y37,NAC60,HRZ2,FIT,IRO2	NAC11, ONAC011, ONAC11, OMTN4, OsY37, OsY37N, OsY37I, OsNAC1, DLN172, OsDLN172, OsNAC092, NAC092, OsNAC92, NAC92,ONAC060, ONAC60, OMTN3, OsNAC60, DLN265, OsDLN265,OsRFPH2-24, OsHRZ2, OsRING150, RING150, CLG1, OsCLG1,OsbHLH156, OsFIT/OsbHLH156, OsFIT, bHLH156, OsIROP1, IROP1,OsIRO2, OsbHLH056, bHLH056, bHLH56, OsbHLH56
49809	33923742	Mackon E., Ma Y., Jeazet Dongho Epse Mackon GC., Usman B., Zhao Y., Li Q., Liu P.	Computational and Transcriptomic Analysis Unraveled <i>OsMATE34</i> as a Putative anthocyanin transporter in Black Rice (<i>Oryza sativa</i> L.) Caryopsis.	Genes (Basel)	12(4)		2021	PAL1,MATE53,MATE47,MATE7,PEZ1,MATE12,F3H1,MATE35,MATE33,LSC6,MATE1,MATE51,MATE34,B2,GSTU34,ANS,_,PEZ2,F3'H,MATE16,MATE52,CHS,MATE49,MATE55,RD,MATE13,MATE31,MATE3,MATE48,CHI3	OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6,OsMATE53,OsMATE47,OsMATE7,OsPEZ1, OsMATE14, MATE14,OsMATE12,OsF3H-1, F3H-1, OsF3H1, OsF3H, F3H, OsF3H3, F3H3,OsMATE35,OsMATE33,UGT, OsUFGT/Os3GT, OsUF3GT, OsUFGT, UFGT, OsLSC6, UF3GT,OsMATE1, OsMATE9, MATE9,OsMATE51,OsMATE34,OsbHLH016, Kala4, OsKala4, OSB2, OsB2,OsGSTU34,ANS, OsANS1, ANS1, LDOX, LDOX1, OsLDOX, OsLDOX1,OsSTA240, OsMATE39, MATE39,OsPEZ2, OsMATE15, MATE15,OsF3'H, OsCYP75B3, CYP75B3, OsF3'H10, F3'H10, OsCYP71P3, CYP71P3,OsMATE16,OsMATE52,CHS*, Oschs, chs, chas, OsCHS, OsCHS1, CHS1, OsPKS26, PKS26, OsCHS24, CHS24, OsCHS27, CHS27,OsMATE49,OsMATE55,Rd, DFR, OsDFR, OS-DFR, OsDFR1, DFR1, DFR-1,OsMATE13,OsMATE31,OsMATE3,OsMATE48,gh1, GH1, OsGH1, OsCHI, Cfi, CHI, OsCHI3
49810	33902846	Zhang Q., Wang Y., Xie W., Chen C., Ren D., Hu J., Zhu L., Zhang G., Gao Z., Guo L., Zeng D., Shen L., Qian Q.	OsMORF9 is necessary for chloroplast development and seedling survival in rice.	Plant Sci.	307	110907	2021		
49811	33826734	Ishikawa A.S., Hayashi S., Tanikawa H., Iino M., Abe T., Kuramata M., Feng Z., Fujiwara T., Kamiya T.	Tonoplast-localized OsMOT1;2 participates in interorgan molybdate distribution in rice.	Plant Cell Physiol.			2021	SULTR5;1	OsSultr5;1, OsSul5;1, OsMOT1;2, MOT1;2
49812	33682300	Liao L., Zhou Y., Xu Y., Zhang Y., Liu X., Liu B., Chen X., Guo Y., Zeng Z., Zhao Y.	Structural and Molecular Dynamics Analysis of Plant Serotonin N-acetyltransferase Reveal an Acid/Base-Assisted Catalysis in Melatonin Biosynthesis.	Angew. Chem. Int. Ed. Engl.	60(21)	12020-12026	2021	SNAT1	OsSNAT1, OsSNAT, SNAT, OsGNAT2, GNAT2
49813	33749847	Gotarkar D., Longkumer T., Yamamoto N., Nanda A.K., Iglesias T., Li L.F., Miro B., Blanco Gonzalez E., Montes Bayon M., Olsen K.M., Hsing Y.C., Kohli A.	A drought-responsive rice amidohydrolase is the elusive plant guanine deaminase with the potential to modulate the epigenome.	Physiol Plant	172(4)	1853-1866	2021	GDA1,_,_,_,GSDA1,_	OsAH, AH, OsGDA1,NAT,NAT,NAT,OsGSDA1,NAT
49814	33745166	Yang Z., Li N., Kitano T., Li P., Spindel J.E., Wang L., Bai G., Xiao Y., McCouch S.R., Ishihara A., Zhang J., Yang X., Chen Z., Wei J., Ge H., Jander G., Yan J.	Genetic mapping identifies a rice naringenin O-glucosyltransferase that influences insect resistance.	Plant J.	106(5)	1401-1413	2021	2ODD2,F3H2,UGT707A3,NOMT	FLS, 2-ODD2, Os2-ODD2, Os2ODD2, OsF3H, F3H, F3H2, OsF3H2, OsF3H03g, F3H03g, OsSAH1, SAH1, OsF3H1, F3H1,OsF3H-2, F3H-2, OsF3H2, FNS1, OsFNS1, OsSAH4, SAH4, OsF3H8, F3H8,OsUGT707A3,OsNOMT, COMTL3, OsCOMTL3, OsCOMT29, COMT29
49815	33920363	Song Y., Jiang M., Zhang H., Li R.	Zinc Oxide Nanoparticles Alleviate Chilling Stress in Rice (<i>Oryza Sativa</i> L.) by Regulating Antioxidative System and Chilling Response Transcription Factors.	Molecules	26(8)		2021	CATB,PRX65,RISBZ5,MYB30,SOD4,PRX11,WRKY94,_,SODCC1,NAC5,PRX89,CATA,WRKY76,SODCC2	CatB, CAT-B, OsCatB, OsCATB, OsCAT1B, CAT1B, CAT2, OsCAT2,prx65, OsPRX65,OsbZIP52, bZIP52,OsMYB30, OsMYB5P, MYB5P, OsMYB13a, MYB13a, Os2R_MYB26, 2R_MYB26, OsMYB30C, MYB30C,OsSOD4, OsCSD4, OsCu/Zn-SOD1, Cu/Zn-SOD1, OsCSD2, CSD2, OsSOD4-Cu/Zn, SOD4-Cu/Zn, Cu/ZnSOD3, CuZnSOD3, sodCp, OssodCp, OsCu/ZnSOD3, CuZnSOD2, OsSOD1,OsPOD, prx11, Osprx11, OsPRX11,OsWRKY94,OsMYB4, Osmyb4, OsMyb4, MYB4, OsMYB55, MYB55, OsMyb8, MYB8, OsMYB13b, MYB13b, OsMYB15, MYB15, Os2R_MYB46, 2R_MYB46,sodCc1, SODCC.1, sodA, RSODA, OsSOD1, OsCSD2, OsSodA, SodCc2, OsSODA1, SODCc1-Cu/Zn, OsCu/Zn-SOD2, Cu/Zn-SOD2, OsCSD1.2, CSD1.2, OsSODCc1-Cu/Zn, SODCc1-Cu/Zn, CuZnSOD1, Cu/ZnSOD1, OsCu/ZnSOD1, OsCSD4, CDS4, CuZnSOD4, OsCuZnSOD1, OsCSD1, CSD1, OsSOD2,OsNAC5, NAC71, ONAC071, ONAC009, ONAC9, ONAC020, ONAC20, OnNAC5*, OnNAC5, OsNAC5/ONAC009,prx89, OsPRX89,CATA1, Cat A1*, OSCAT-A, Cat2, CatA1, CAT-A, OsCatA, OsCAT, CAT, catA, OSCATA, OsCATc, OsCATA, OsCAT1A, CAT1, OsCAT1, OsCATC, OsCAT2,OsWRKY76, OsWRKY76.1, OsWRKY76.2, OsWRKY76.3,Cu/Zn-SOD, Cu/Zn- SOD, OsCu-ZnSOD2, Cu-ZnSOD2, OsSODB, OsSOD3, SodCc2, Os SodCc2, sodB, OsSodB, RSODB, OssodCc1, OsCSD1.1, CSD1.1, OsCDS1, OsSOD3-CU/Zn, SOD3-CU/Zn, CuZnSOD2, Cu/ZnSOD2, OsCu/ZnSOD2, OsCSD1, CSD1, CuZnSOD1, OsCuZnSOD2, OsCSD4, CSD4, OsCSD3, CSD3, Cu/Zn-SOD3
49816	34003932	Lian J.P., Yang Y.W., He R.R., Yang L., Zhou Y.F., Lei M.Q., Zhang Z., Huang J.H., Cheng Y., Liu Y.W., Zhang Y.C., Chen Y.Q.	Ubiquitin-dependent Argonaute protein MEL1 degradation is essential for rice sporogenesis and phasiRNA target regulation.	Plant Cell			2021	XBOS36,MEL1	OsXBOS36,  OsRING3, RING3,mel1, OsMEL1, MEAL1, OsMEAL1, OsAGO5c 
49817	34003966	Tian X., He M., Mei E., Zhang B., Tang J., Xu M., Liu J., Li X., Wang Z., Tang W., Guan Q., Bu Q.	WRKY53 Integrates Classic Brassinosteroid Signaling and the Mitogen-Activated Protein Kinase Pathway to Regulate Rice Architecture and seed size.	Plant Cell			2021	CYP76M7,DWARF4,BIN2,BZR1,CYP97C2,D2,DSG1,D11,GSN1,CPS4,WRKY53,CYP93G2,WRKY72,BRD1,SMG1,ERD1	OsCYP76M7,OsDWARF4, osdwarf4, OsDWF4, DWF4, CYP90B2, OsCYP90B2, D4, OsD4,GSK2, Os GSK2, OsGSK2, Os BIN2, OsBIN2, BIN2/GSK2, OsSK22/OsGSK7, OsSK22, OsGSK7, SK22, GSK7, OsSK22/GSK2 ,OsBZR1, Os BZR1, OsBES1-6, BES1-6,OsCYP97C2,d2, dwf2, CYP90D2, D2/CYP90D2, OsD2, SMG11, OsSMG11, D2/SMG11, OsD2a, OsD2b,OsMAPK6, MAPK6, OsMPK6, OsSIPK, SIPK, OsMAPK1, MAPK1, MPK1, OsMPK1, MPK6, OsDSG1,d11(d8), dwf10, d8, D11/CYP724B1, d11, CYP724B1, GNS4, OsD11, PMM1, OsPMM1, PMM1/D11, NBG4, OsCPB1, CPB1, CPB1/D11,MKP1, OsMKP1, osmkp1, LARGE8, GLA1, OsGLA1,OsCPS4, CYC1, OsCYC1, OsCyc1, cpsl3, OsCPSL3, OsCPSsyn, OsCyc1/OsCPS4, OsTPS15, Os-CPS4, TPS11, OsTPS11,OsWRKY53, WRKY-53,OsCYP93G2, OsF2H, F2H, OsCYP71S1, CYP71S1,OsWRKY72, WRKY-72,brd1, OsDWARF, DWARF, OsBR6ox, BR6ox, CYP85A1, CYP85A4, OsDWF, CYP85A1/OsDWARF, OsBRD1, OsCYP85A1,OsMKK4, MKK4, OsMKK4/SMG1, OsMAPKK4, MAPKK4, OsMEK4, MEK4, OsSMG1, SMG1/OsMEK6, OsMEK6, MEK6, OsSTS, STS,CLPD1, ClpD1, OsERD1, OSClpD, osClpD, OsClpD1, OsClpD1.1, OsClpD1.2, OsClpD1.3, OsClpD1.4 
49818	34015125	Chen Q., Liu R., Wu Y., Wei S., Wang Q., Zheng Y., Xia R., Shang X., Yu F., Yang X., Liu L., Huang X., Wang Y., Xie Q.	ERAD-related E2 and E3 enzymes modulate the drought response by regulating the stability of PIP2 aquaporins.	Plant Cell			2021		
49819	34051336	Sharma S., Vengavasi K., Kumar M.N., Yadav S.K., Pandey R.	Expression of potential reference genes in response to macronutrient stress in rice and soybean.	Gene	792	145742	2021		
49820	33958781	Purugganan M.D., Jackson S.A.	Advancing crop genomics from lab to field.	Nat. Genet.	53(5)	595-601	2021		
49821	33866575	Chang X., Wang F., Fang Q., Chen F., Yao H., Gatehouse A.M.R., Ye G.	Virus-induced plant volatiles mediate the olfactory behaviour of its insect vectors.	Plant Cell Environ.	44(8)	2700-2715	2021	TPS29	OsTPS29, OsCAS, CAS, OsTPS3, TPS3, TPS33, OsTPS33
49822	33942424	Xiang D., Meng F., Wang A., Wu Y., Wang Z., Zheng S., Mao C.	Root-secreted peptide OsPEP1 regulates primary root elongation in rice.	Plant J.	107(2)	480-492	2021	_,PSR1,NRT2.1,PEP1,SPX1,PT10,NLP3,PHR2,PT2	OsNIA1, OsNia1, NIA1, Nia1, OsNR, NR, OsNR2, NR2, NIA2,PSR1, NiR, OsNiR, OsNIR1, NIR1, FD-NiR, OsNiR2,OsNRT2.1, OsNRT2.2,OsPEP1,OsSPX1,OsPT10, PHT1-10, OsPht1;10,OsNLP3,OsPHR2, Os-PHR2,OsPT2, PTH1-2, OsPht1;2, PHT1;2, OsPHT1;2
49823	34113363	Kim E.J., Hong W.J., Tun W., An G., Kim S.T., Kim Y.J., Jung K.H.	Interaction of OsRopGEF3 Protein With OsRac3 to Regulate root hair Elongation and Reactive Oxygen Species Formation in Rice (<i>Oryza sativa</i>).	Front Plant Sci	12	661352	2021	ROPGEF3,RAC7,RBOHC,RAC3,RAC6	Os RopGEF3, OsRopGEF3, RopGEF3, OsGEF26, GEF26,OSRAC7, OsRac7, ROP5, OsRop5,rbohC, OsrbohC, Os rbohC, OsRbohC, OsNox5, Nox5, OsrbohD, OsRboh5, RBOHA, OsRboh5, Rboh5,OsRac3,OsRacB, RacB, OsRac6
49824	34018050	Liu X., Xu Z., Yang Y., Cao P., Cheng H., Zhou H.	plastid caseinolytic protease OsClpR1 regulates chloroplast development and chloroplast RNA editing in rice.	Rice (N Y)	14(1)	45	2021	CLPP5,AL3,CLPS1,CLP7,CLPP4	OsClpP5, ClpP5, OsClp4, CLP4,OsClp8, CLP8, OsClpR1, ClpR1,OsClpS1, ClpS1,OsClp7, OsClpP2, ClpP2,OsClpP4, ClpP4, OsClp11, CLP11
49825	34067367	Kamolsukyeunyong W., Sukhaket W., Pitija K., Thorngkham P., Mahatheeranont S., Toojinda T., Vanavichit A.	Rice Sesquiterpene Plays Important Roles in Antixenosis against Brown Planthopper in Rice.	Plants (Basel)	10(6)		2021	STPS	OsSTPS, OsSTPS2, STPS2, OsEBFS, EBFS, TPS5, OsTPS5
49826	34070794	Huang Y., Zheng P., Liu X., Chen H., Tu J.	OseIF3h Regulates Plant Growth and pollen Development at Translational Level Presumably through Interaction with OsMTA2.	Plants (Basel)	10(6)		2021	MTA2,EIF3H	OsMTA2, OsIME4, IME4, OsMTB, MTB,eIF-3h, OseIF3h
49827	34098413	Jiang J., Xie Y., Du J., Yang C., Lai J.	A SUMO ligase OsMMS21 regulates rice development and auxin response.	J. Plant Physiol.	263	153447	2021		
49828	34073266	Huwa N., Weiergr?ber OH., Kirsch C., Schaffrath U., Classen T.	Biochemical and Initial Structural Characterization of the Monocot Chimeric Jacalin OsJAC1.	Int J Mol Sci	22(11)		2021	JAC1	OsJAC1, DIR54, OsDIR54, OsjDIR54, OsJRL29, JRL29
49829	33740293	Sun C., Zhang K., Zhou Y., Xiang L., He C., Zhong C., Li K., Wang Q., Yang C., Wang Q., Chen C., Chen D., Wang Y., Liu C., Yang B., Wu H., Chen X., Li W., Wang J., Xu P., Wang P., Fang J., Chu C., Deng X.	Dual function of clock component OsLHY sets critical day length for photoperiodic flowering in rice.	Plant Biotechnol. J.	19(8)	1644-1657	2021	HD2,EF1,HD3B,HD3A,CCA1,PRR95,TOC1,PRR59,CAB1R,GI,SE1,PRR73,RFT1	Hd2(t), Hd2, qHD2(t), OsPRR37, Os-PRR37, PRR37, Prr4, OsPRR4, DTH7, Os DTH7, OsCCT28, CCT28, Ghd7.1, PRR37/Hd2, EH7-2, EH7-2/Hd2, Hd2/PRR37, PRR37-1a, PRR37-1b, PRR37-1c, PRR37-2a, PRR37- 2, HD7.2,Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,Hd17, EF7, Ef7, OsELF3-1, ELF3-1, OsELF3, ELF3, ELF3_chr.6, OsELF3.1, ELF3.1, OsELF3a, ELF3a,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,OsCCA1, OsLHY, LHY, LHY-like_chr.8, COC1, DLN203, OsDLN203, LEM1, OsLEM1, Nhd1, OsNhd1,OsPRR95, Os-PRR95, Prr2, OsPRR2, OsCCT33,OsTOC1, OsPRR1, Os-PRR1, PRR1, OsRRA21, OsCCT07,OsPRR59, Os-PRR59, Prr5, OsPRR5, OsCCT38, CCT38,cab1R, LHCP, CAB, OsLhcb1, Lhcb1, Cab1, OsCAB1, Lhcb1b, OsLhcb1b, CAB2R,OsGI, Gi, Os-GI,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, OsHd1,  Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,OsPRR73, Os-PRR73, Prr3, OsPRR3, OsRRA20, OsCCT11, CCT11,FT-L 3, OsFTL3, FTL3, FT-L3, RFT, OsRFT1
49830	33896105	Fd Martini L., Roma-Burgos N., Tseng T.M., V Fipke M., A Noldin J., A de Avila L.	Acclimation to cold stress reduces injury from low temperature and bispyribac-sodium on rice.	Pest Manag. Sci.	77(9)	4016-4025	2021	FAD8,CYP72A21,GSTL2,RAN2	OsFAD8, Osfad8,OsCYP72A21,OsGSTL2, GSTZ5, OsGSTZ5,OsRAN2
49831	33977586	Li X., Zhang Y., Liu Q., Song S., Liu J.	Poly ADP-ribose polymerase-1 promotes seed-setting rate by facilitating gametophyte development and meiosis in rice (Oryza sativa L.).	Plant J.			2021	PARP3,LIG4,PARP1,KU80,PARG	OsEnS-38, OsPARP3,OsLig4, Lig4,OsPARP1, PARP, OsPARP1.1, OsPARP1.2,OsKu80, Ku80,OsPARG
49832	34067996	Kim J.H., Hwangbo K., Lee E., Dubey S.K., Chung M.S., Chung B.Y., Lee S.	Application of Gamma Ray-Responsive Genes for Transcriptome-Based Phytodosimetry in Rice.	Plants (Basel)	10(5)		2021	WEE1,MSH5,RPA1,GRG,RAD51A2	Ores;Wee1, OsWEE1,OsMSH5,OsRPA1, OsRPA70b, RPA70b,OsGRG,OsRad51A2, OsRAD51
49833	34034660	Zheng K., Wang X., Wang Y., Wang S.	Conserved and non-conserved functions of the rice homologs of the Arabidopsis trichome initiation-regulating MBW complex proteins.	BMC Plant Biol.	21(1)	234	2021	GL1D,TTG1A,RC,PS,GL1A,GL1B,PA,C,_	OsMyb3, OSMYB3, MYB3, OsGL1D, OsMYB46, MYB46, Kala3, OsKala3, SMG3, OsSMG3, Os2R_MYB39, 2R_MYB39,OsWD40-50, WD40-50, OsTTG1A, OsTTG1, TTG1 ,Rc, OsbHLH017, OsbHLH17, SD7-1, qSD7-1/qPC7, OsGL3C, GL3C,Ra*, bhlh13, OsbHLH013, OsbHLH13, Ra, OSB1, Ra1, OsGL3A, GL3A, OsB2, OsMYC7, MYC7, OsPs, Ps, OsHLH1, HLH1,R2R3-MYB, OsGL1A, DLN218, OsDLN218, OsMYB102, MYB102, Os2R_MYB81, 2R_MYB81 ,OsGL1B,OsbHLH015, OsbHLH15, bHLH15, OsGL3B, GL3B, OsMYC6, MYC6, OsPa, Pa, OsHLH2, HLH2,C, Cp, OsC1, Os-C1, C1, OsMyb6, Myb6, OsPL6, PL6, OsGL1E, GL1E, Os2R_MYB63, 2R_MYB63, OsC1PLSr, C1PLSr,OsMyb4, OSMYB4, MYB4, OsEnS-11, OsGL1C, GL1C, OsMYB13, MYB13, Os2R_MYB11, 2R_MYB11 
49834	33950284	Kim B., Piao R., Lee G., Koh E., Lee Y., Woo S., Reflinur, Jiang W., Septiningsih E.M., Thomson M.J., Koh H.J.	OsCOP1 regulates embryo development and flavonoid biosynthesis in rice (Oryza sativa L.).	Theor. Appl. Genet.	134(8)	2587-2601	2021	PPS	OsWD40-55, OsCOP1, COP1, YEL, OsYEL, OsPPS, COP1-1, OsCOP1-1,  OsRING347, RING347
49835	34003383	Hu C., Huang L., Chen Y., Liu J., Wang Z., Gao B., Zhu Q., Ren C.	Fumarylacetoacetate hydrolase is required for fertility in rice.	Planta	253(6)	122	2021	FAH	OsFAH
49836	34062391	Liu T., Jiang G.Q., Yao X.F., Liu C.M.	The leucine-rich repeat receptor-like kinase OsERL plays a critical role in anther lobe formation in rice.	Biochem. Biophys. Res. Commun.	563	85-91	2021		
49837	34064770	Meng B., Wang T., Luo Y., Xu D., Li L., Diao Y., Gao Z., Hu Z., Zheng X.	Genome-Wide Association Study Identified Novel Candidate Loci/Genes Affecting Lodging Resistance in Rice.	Genes (Basel)	12(5)		2021	_,ACL-D,CFL1,ES1,CCC1,_,LR21	,OsZHD1, ZHD1, OsACL-D, ZHD_G6, OsZHD_G6,OsCFL1,TUT1, OsSCAR1, SCAR1, TUT1/OsSCAR1, OsSCAR2, SCAR2,Os CCC1, OsCCC1, OsLAT9 ,,Lr21, OsLr21
49838	33938007	Kong Y., Wang G., Chen X., Li L., Zhang X., Chen S., He Y., Hong G.	OsPHR2 modulates phosphate starvation-induced OsMYC2 signalling and resistance to Xanthomonas oryzae pv. oryzae.	Plant Cell Environ.			2021	TIFY11B,POX22.3,LOX8,SH11,PHR2,PR1A,PR1B,TIFY9,AOS2,_,TIFY5,BHLH9,TIFY11D	OsJAZ4, JAZ4, OsJAZ 10, OsJAZ10, JAZ10, OsTIFY11b,POX22.3, OSPER, OsPOX, POX, Pir3, prx111, POX22, OsPOX1, POX1, OsPOX22.3, OsPR9, PR9,OsLOX8, OsLOX9, LOX9, OsLOX2;3, LOX2;3, OsLOX2, OsLOX1, CM-LOX8,OsJAmyb, JAmyb, OsJAMyb, OsMYB21, MYB21, Os2R_MYB91, 2R_MYB91, OgSH11, OsSH11,OsPHR2, Os-PHR2,OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1, OsPR1b, PR1alpha, OsPR1alpha,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1, OsPR1a, PR1a,OsJAZ11, OsJAZ5, OsTIFY9, JAZ11, JAZ5, JAZ11/TIFY9 ,OsAOS2, CYP74A2, OsAOS, OsAOS1,Lox2:Os:1, OsLOX9, LOX9, OsLOX8, LOX8, OsLOX2, LOX2, OsRLL, OsHI-LOX, HI-LOX, RLL2 LOX, RLL2, Lox2osPil, OsLOX2;1, LOX2;1, OsLOX1, OsLOX7, LOX7,OsJAZ 2, OsJAZ2, JAZ2, OsTIFY5, OsSTA188, OsJAZ5, JAZ5,OsbHLH009, bHLH009, OsMYC2, MYC2,OsTIFY11d, OsJAZ1, JAZ1, OsJAZ 12, OsJAZ12, JAZ12
49839	34026296	Reddy M.R., Mangrauthia S.K., Reddy S.V., Manimaran P., Yugandhar P., Babu P.N., Vishnukiran T., Subrahmanyam D., Sundaram R.M., Balachandran S.M.	PAP90, a novel rice protein plays a critical role in regulation of D1 protein stability of PSII.	Journal of Advanced Research	30	197-211	2021	FTSH9,FTSH8,FTSH3,PAP90,FTSH2,FTSH7,FTSH1	OsFtsH9, FtsH9, OsFtsH2, FtsH2,OsFtsH8, FtsH8,OsFtsH3, FtsH3,OsPAP90,OsFtsH2, FtsH2,OsFtsH7, FtsH7,OsFtsH1, FtsH1
49840	34021760	Yang D., Liu X., Yin X., Dong T., Yu M., Wu Y.	rice non-specific Phospholipase C6 Is Involved in Mesocotyl Elongation.	Plant Cell Physiol.			2021		
49841	34057184	Hasegawa K., Kamada S., Takehara S., Takeuchi H., Nakamura A., Satoh S., Iwai H.	Rice Putative Pectin Methyltransferase Gene OsPMT10 is Required for Maintaining the Cell Wall Properties of Pistil Transmitting Tissues via Pectin Modification.	Plant Cell Physiol.			2021	PMT10	OsPMT10
49842	34003317	Samanta S., Banerjee A., Roychoudhury A.	Exogenous melatonin regulates endogenous phytohormone homeostasis and thiol-mediated detoxification in two indica rice cultivars under arsenic stress.	Plant Cell Rep.	40(8)	1585-1602	2021		
49843	34058048	Yoon J., Cho L.H., Kim S.R., Tun W., Peng X., Pasriga R., Moon S., Hong W.J., Ji H., Jung K.H., Jeon J.S., An G.	CTP synthase is essential for early endosperm development by regulating nuclei spacing.	Plant Biotechnol. J.			2021	MADS89,ENL2,MADS79,CTPS4,CTPS6,CTPS5,CTPS2,CTPS3	OsMADS89,OsCTPS1, CTPS1,OsMADS79,OsCTPS4,OsCTPS6,OsCTPS5,OsCTPS2,OsCTPS3
49844	33892515	Liang J., Shen Q., Wang L., Liu J., Fu J., Zhao L., Xu M., Peters R.J., Wang Q.	Rice contains a biosynthetic gene cluster associated with production of the casbane-type diterpenoid phytoalexin ent-10-oxodepressin.	New Phytol.	231(1)	85-93	2021	CYP71Z2,TPS13,CYP71Z22,CYP71Z21 	Oscyp71Z2,TPS3, OsSTP3, OsTPS28, TPS28, OsTPS13, TPS35, OsTPS35, OsECBS, ECBS,OsCYP71Z22,OsCYP71Z21 
49845	33982131	Zhang H., Wu T., Li Z., Huang K., Kim N.E., Ma Z., Kwon S.W., Jiang W., Du X.	OsGATA16, a GATA transcription factor, Confers cold tolerance by Repressing OsWRKY45-1 at the Seedling Stage in Rice.	Rice (N Y)	14(1)	42	2021	MYB30,WRKY45,SRFP1,GATA16,CYL4	OsMYB30, OsMYB5P, MYB5P, OsMYB13a, MYB13a, Os2R_MYB26, 2R_MYB26, OsMYB30C, MYB30C,OsWRKY45, OsWRKY45-1, OsWRKY45-2, WRKY45-1, WRKY45-2,OsSRFP1,  OsRING157, RING157, SDEL2, OsSDEL2,OsGATA16, OsGNC, GNC,OsCYL4, OsCYL4a, OsCYL4b
49846	33773005	Viana V.E., Carlos da Maia L., Busanello C., Pegoraro C., Costa de Oliveira A.	When rice gets the chills: comparative transcriptome profiling at germination shows WRKY transcription factor responses.	Plant Biol (Stuttg)	23 Suppl 1	100-112	2021	WRKY42,MPK7,WRKY77,WRKY24,WRKY53,WRKY62,WRKY69,VQ25,WRKY47,WRKY71,DSG1,WRKY74,WRKY72,VQ11,VQ19,VQ24,VQ16,VQ13,VQ35,VQ1,WRKY21,VQ9,VQ5,MAPK4,MPK6,VQ30,WRKY76,_,WRKY3,_,MAP3,MPK9,WRKY10,WRKY8	OsWRKY42, WRKY-42,OsMPK7, OsMAPK44, MAPK44, OsMAPK20-5, MAPK20-5,OsWRKY77, WRKY-77,OsWRKY24,OsWRKY53, WRKY-53,OsWRKY62, OsWRKY62.1, OsWRKY62.2, XB10, OsWRKY62-1, OsWRKY62-2,OsWRKY69,OsVQ25,OsWRKY47,OsWRKY71, WRKY-71,OsMAPK6, MAPK6, OsMPK6, OsSIPK, SIPK, OsMAPK1, MAPK1, MPK1, OsMPK1, MPK6, OsDSG1,OsWRKY74,OsWRKY72, WRKY-72,OsVQ11,OsVQ19,OsVQ24,OsVQ16,OsVQ13,OsVQ35,OsVQ1,OsWRKY21,OsVQ9,OsVQ5,OsMAPK4, OsMAP2, OsMSRMK3, OsMPK4, OsMPK7, MAP2, MSRMK3, MPK4, MPK7, MAPK7, OsMAPK7,OsMPK6, OsDR6, DR6, OsMPK4, MPK4, OsMAPK4, MAPK4,OsVQ30,OsWRKY76, OsWRKY76.1, OsWRKY76.2, OsWRKY76.3,OsMPK16, MPK16,OsWRKY3 ,OsMPK13, OsMAPK2, OsBIMK2, BIMK2, MPK13, MAPK2, OsMAPK17-2, MAPK17-2,OsMAPK33, OsMPK14, OsMAPK2, OsMAP3, OsMAPK14, OsMPK3, MAPK33, MPK14, MAPK2, MAPK14, MPK3, OsMAPK3, MAPK3,OsMPK9,OsWRKY10,OsWRKY8
49847	33980871	Selvaraj R., Singh A.K., Singh V.K., Abbai R., Habde S.V., Singh U.M., Kumar A.	Superior haplotypes towards development of low glycemic index rice with preferred grain and cooking quality.	Sci Rep	11(1)	10082	2021		
49848	34065373	Musavizadeh Z., Najafi-Zarrini H., Kazemitabar S.K., Hashemi S.H., Faraji S., Barcaccia G., Heidari P.	Genome-Wide Analysis of <i>Potassium Channel</i> Genes in Rice: Expression of the <i>OsAKT</i> and <i>OsKAT</i> Genes under Salt Stress.	Genes (Basel)	12(5)		2021	KAT2,_,NKT5,AKT1,KOB1,GORK ,AKT2,SKOR ,KAT1,TPK1,TPKA,KAT3,KAT4,_,ROK,TPKB	OsKAT2,,OsNKT5, OsKAT3, KAT3,OsAKT1, Os-AKT1,OsKOB1, OsAKR3, AKR3,OsGORK, OsK5.2, K5.2, KOR1, OsKOR1, OsSKOR, SKOR,OsAKT2, ZMK2, OsZMK2, OsK3.1, K3.1,OsSKOR, OsK5.1, K5.1,OsKAT1, OsKAT3,OsTPK1,TPKa, OsTPKa, OsTpka, TPK1a, OsTPK1a,OsKAT3, OsKAT1, KAT1,OsKAT4,,OsROK,TPKb, OsTPKb
49849	34044225	Sathee L., Jha S.K., Rajput O.S., Singh D., Kumar S., Kumar A.	Expression dynamics of genes encoding nitrate and ammonium assimilation enzymes in rice genotypes exposed to reproductive stage salinity stress.	Plant Physiol. Biochem.	165	161-172	2021		
49850	33962060	Chen Y., Shen J., Zhang L., Qi H., Yang L., Wang H., Wang J., Wang Y., Du H., Tao Z., Zhao T., Deng P., Shu Q., Qian Q., Yu H., Song S.	Nuclear translocation of OsMFT1 that is impeded by OsFTIP1 promotes drought tolerance in rice.	Mol Plant	14(8)	1297-1311	2021		
49851	34015460	Li D.Q., Wu X.B., Wang H.F., Feng X., Yan S.J., Wu S.Y., Liu J.X., Yao X.F., Bai A.N., Zhao H., Song X.F., Guo L., Zhang S.Y., Liu C.M.	Defective mitochondrial function by mutation in THICK ALEURONE 1 encoding a mitochondrion-targeted single-stranded DNA-binding protein leads to increased aleurone cell layers and improved nutrition in rice.	Mol Plant	14(8)	1343-1361	2021	TWINKLE,RECA3,TA1	OsTWINKLE,RecA, OsRECA3,SSB, OsmtSSB1, mtSSB1, MTSSB1, OsTA1
49852	34008219	Tian Q., Shen L., Luan J., Zhou Z., Guo D., Shen Y., Jing W., Zhang B., Zhang Q., Zhang W.	Rice shaker potassium channel OsAKT2 positively regulates salt tolerance and grain yield by mediating K+ redistribution.	Plant Cell Environ.	44(9)	2951-2965	2021	AKT2	OsAKT2, ZMK2, OsZMK2, OsK3.1, K3.1
49853	34037776	Yu E., Yamaji N., Mochida K., Galis I., Asaka K., Ma J.F.	Lysine Ketoglutarate Reductase Trans-Splicing related 1 Is Involved In A Temperature-Dependent Root Growth in Rice.	J. Exp. Bot.			2021	AAT1,WOX11,LKR/SDH,AAT3, BHLH120,ASN1,ASNASE2,DICE2	AST, OsAAT1,OsWOX11, Os WOX11, OsWOX12A,OsLKR/SDH, OsLKR, OsSDH,OsAAT3,OsbHLH120, bHLH120,OsASN1, OsAS1, AS1,OsASNase2, ASNase2,OsDICE2, OsLKRT1, LKRT1
49854	33932077	Li W., Xiong Y., Lai L.B., Zhang K., Li Z., Kang H., Dai L., Gopalan V., Wang G.L., Liu W.	The rice RNase P protein subunit Rpp30 confers broad-spectrum resistance to fungal and bacterial pathogens.	Plant Biotechnol. J.			2021	PR10A,CHT3,PR1A,PR5,CCT39,JIOSPR10,HDT701,RPP30S,_,PAL1,CCT36,RAA1	PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,Cht3*, Cht3, Cht-3, CH6, OsChia1c, CHI7, OsCHI11, CHI11, OsPR3, PR3,OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1, OsPR1b, PR1alpha, OsPR1alpha,OsPR5, Pir2, PR-5, PR5-1,OsCCT39, OsCMF13, CMF13, OsRpp30-L, Rpp30-L,JIOsPR10, OsPR10, PR10, OsJiPR10, JiPR10, OsPR10c, PR10c,OsHDT1, HDT701, OsHDT701, ZOS5-12, OsZOS5-12, HDT1,OsRpp30-S, OsRpp30-S,OsLP, PR-5, 14b,OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6,OsCCT36, OsCMF12, CMF12, OsRpp30, Rpp30,OsRAA1, OsFPFL1, FPFL1
49855	33942463	Xu X., Xu Z., Li Z., Zakria M., Zou L., Chen G.	Increasing resistance to bacterial leaf streak in rice by editing the promoter of susceptibility gene OsSULRT3;6.	Plant Biotechnol. J.	19(6)	1101-1103	2021	SULTR3;6	OsSultr3;6, OsSul3;6, OsSULTR3;6 
49856	34220045	Sagor G.H.M., Inoue M., Kusano T., Berberich T.	Expression profile of seven polyamine oxidase genes in rice (<i>Oryza sativa</i>) in response to abiotic stresses, phytohormones and polyamines.	Physiol Mol Biol Plants	27(6)	1353-1359	2021	PAO7,PAO4,PAOB,PAO3,PAO1,PAOA,PAO5	OsPAO7, OsPAO3, PAO3,OsPAO4, OsAO1, AO1,PAOb, OsPAOb, OsPAO6, OsPAO2, PAO6, PAO2,OsPAO3, OsAO3, AO3,OsPAO1, OsAO4, AO4,PAOa, OsPAO2, PAO2, OsPAOa,OsPAO5, OsAO2, AO2
49857	33884679	Yang X., Wang J., Xia X., Zhang Z., He J., Nong B., Luo T., Feng R., Wu Y., Pan Y., Xiong F., Zeng Y., Chen C., Guo H., Xu Z., Li D., Deng G.	OsTTG1, a WD40 repeat gene, regulates anthocyanin biosynthesis in rice.	Plant J.	107(1)	198-214	2021	_,F3H1,RC,F3'H,ARM1,MS188,B2,MPS,RD,CHS,PHL7,TTG1B,DLN254,WD40-14,TTG1A,ANS	,OsF3H-1, F3H-1, OsF3H1, OsF3H, F3H, OsF3H3, F3H3,Rc, OsbHLH017, OsbHLH17, SD7-1, qSD7-1/qPC7, OsGL3C, GL3C,OsF3'H, OsCYP75B3, CYP75B3, OsF3'H10, F3'H10, OsCYP71P3, CYP71P3,OsMYB-1, MYB-1, MYB1, OsARM1, Os2R_MYB56, 2R_MYB56, OsMYBxoc1, MYBxoc1,OsMYB80, MYB80, OsMS188, Os2R_MYB44, 2R_MYB44, OsMYB103/OsMYB80/OsMS188/BM1, OsMYB103, MYB103,OsbHLH016, Kala4, OsKala4, OSB2, OsB2,OsMPS, Os2R_MYB25, 2R_MYB25,Rd, DFR, OsDFR, OS-DFR, OsDFR1, DFR1, DFR-1,CHS*, Oschs, chs, chas, OsCHS, OsCHS1, CHS1, OsPKS26, PKS26, OsCHS24, CHS24, OsCHS27, CHS27,OsPHL7,OsTTG1B,R2R3-MYB, OsDLN254, OsMYB2, Os2R_MYB94, 2R_MYB94,OsWD40-14, OsDWD36, DWD36,OsWD40-50, WD40-50, OsTTG1A, OsTTG1, TTG1 ,ANS, OsANS1, ANS1, LDOX, LDOX1, OsLDOX, OsLDOX1
49858	34155141	Xiong H., Hua L., Reyna-Llorens I., Shi Y., Chen K.M., Smirnoff N., Kromdijk J., Hibberd J.M.	Photosynthesis-independent production of reactive oxygen species in the rice bundle sheath during high light is mediated by NADPH oxidase.	Proc. Natl. Acad. Sci. U.S.A.	118(25)		2021	RBOHC,RBOHI,RBOHG,RBOHA	rbohC, OsrbohC, Os rbohC, OsRbohC, OsNox5, Nox5, OsrbohD, OsRboh5, RBOHA, OsRboh5, Rboh5,OsrbohI, Os rbohI, rbohI, OsRbohI, OsRbohF, OsNOX8, NOX8, OsRboh8, Rboh8,rbohG, OsrbohG, Os rbohG, OsRbohG, OsNox7, Nox7, OsrbohB, OsRBOHB, RBOHB, OsRboh7, Rboh7,rbohA, OsrbohA, Os rbohA, OsRbohA, OsNox2, Nox2, OsRboh2, Rboh2
49859	34155145	Desai J.S., Lawas L.M.F., Valente A.M., Leman A.R., Grinevich D.O., Jagadish S.V.K., Doherty C.J.	Warm nights disrupt transcriptome rhythms in field-grown rice panicles.	Proc. Natl. Acad. Sci. U.S.A.	118(25)		2021	CXC2,HD3B,GGP,PIL13,C3H54,BMY6,RDD2,EHD4,PRR95,LCD1,RDD4,ABA1,LHCB2.1,SPL12,STO	OsCXC2,Hd17, EF7, Ef7, OsELF3-1, ELF3-1, OsELF3, ELF3, ELF3_chr.6, OsELF3.1, ELF3.1, OsELF3a, ELF3a,OsGGP,OsPIL1, OsPIL13, OsbHLH152, bHLH152, PIF7, OsPIF7, OsPIF4, PIF4, OsPIF1,OsC3H54,OsBMY6, BAM3, OsBAM3,OsDof23, Dof23, OsDof-23, OsDof1, OsCDF3, CDF3, OsDof24, Dof24,OsC3H20, C3H20, Ehd4, DLN73, DLN73a, DLN73b, OsDLN73, OsDLN73a, OsDLN73b,OsPRR95, Os-PRR95, Prr2, OsPRR2, OsCCT33,NRAMP5, OsNRAMP5, OsNramp5, OsLCD1,OsDof12, Dof12, OsDof-12, OsCDF1, OsCDF1/OsDOF12, OsDOF12, CDF1, DOF12, OsDof11, Dof11,OsABA1, Zep1, OsAba1, Aba2, OsAba2, OsZep1, Zep, OsZep, Aba1, OsABA2, Osaba1, OsZEP-1, OsZEP, OSZEP1, ZEP1, ZEP,LHCB, LHCP II, Lhcb2, OsLhcb2, Lhcb2.1, OsLhcb2.1 ,OsSPL12, DLN176, OsDLN176,OsBBX11, OsSTO, BBX11, BBX24, OsBBX24
49860	34161289	Montero H., Lee T., Pucker B., Ferreras-Garrucho G., Oldroyd G., Brockington S.F., Miyao A., Paszkowski U.	A mycorrhiza-associated receptor-like kinase with an ancient origin in the green lineage.	Proc. Natl. Acad. Sci. U.S.A.	118(25)		2021	KIN6,SPARK1,SPARK11,RLCK50,SPARK2,SPARK8,AM14,SPARK3,SPARK10,SPARK4,SPARK6,SRL1,SPARK7	OsKIN6, OsARK2, ARK2,OsSPARK1,OsSPARK11,OsRLCK50, OsSPARK5, SPARK5,OsSPARK2,OsSPARK8,OsAM14, OsARK1, ARK1,OsSPARK3,OsSPARK10,OsSPARK4,OsSPARK6,OsSRL1, CLD1/SRL1, CLD1, OsCLD1, OsSPARK9, SPARK9,OsSPARK7
49861	34197950	Hu Z., Yuan F., Guo Y., Ying S., Chen J., Zhu D., Cai L., Wang X., Liu W., Peng X.	OsCBL1 affects rice seedling growth by modulating nitrate and phosphate responses.	Gene	796-797	145806	2021		
49862	34117872	Hu D., Yu Y., Wang C., Long Y., Liu Y., Feng L., Lu D., Liu B., Jia J., Xia R., Du J., Zhong X., Gong L., Wang K., Zhai J.	Multiplex CRISPR-Cas9 editing of DNA methyltransferases in rice uncovers a class of non-CG methylation specific for GC-rich regions.	Plant Cell			2021	DRM2,CMT2,DRM1B,DRM3,DRM1A,CMT1,CMT3	OsDRM2, osdrm2, DRM2-1,OsCMT2, OsCMT3a, CMT3a,OsDRM1b,OsDRM3, DRM2-2 ,OsDRM1a,OsCMT1, OsCMT3b, CMT3b,OsCMT3, CMT3-1, CMT2, OsCMT2
49863	34077549	Zhang F., Hu Z., Wu Z., Lu J., Shi Y., Xu J., Wang X., Wang J., Zhang F., Wang M., Shi X., Cui Y., Cruz C.V., Zhuo D., Hu D., Li M., Wang W., Zhao X., Zheng T., Fu B., Ali J., Zhou Y., Li Z.	Reciprocal adaptation of rice and Xanthomonas oryzae pv. oryzae: cross-species two-dimensional GWAS reveals the underlying genetics.	Plant Cell			2021	XA22,EXS,SWEET13,XA40,_	Xa22, Xa22*, RXa20, Xa(t), Xa22(t),OsEXS, OsRLCK354, RLCK354,OsSWEET13, Xa25(t), Xa25, OsMtN3, Xa25/SWEET13, OsSWEET13/XA25,,WAK3, OsWAK3
49864	34186219	Qiao J., Jiang H., Lin Y., Shang L., Wang M., Li D., Fu X., Geisler M., Qi Y., Gao Z., Qian Q.	A novel miR167a-OsARF6-OsAUX3 module regulates grain length and weight in rice.	Mol Plant			2021	EXPA3,EXPA32,MIR167A,EXPL2,EXPL1,EXPA22,ARF6A,RAU3,EXPA1	OsEXP3 (Os-EXP3), EXPA3, OsEXP3, Os-EXP3, OsaEXPa1.18, RiExD, Os-EXPA3, OsEXPA3,OsEXPA32,miR167a, osa-miR167aosa-miR167a-3p osa-miR167a-5p, OsmiR167a,Os-EXPL2, OsEXPL2,OsEXPLA1, EXPLA1, OsRIP3, RIP3, Os-EXPL1, OsEXPL1,OsEXPA22, OsEXP22, osaEXPa1.9,OsARF6a, OsARF6, ARF6,OsLAX3, OsRAU3, OsAUX2, LAX3, AUX2, OsAUX3, AUX3, ARF2,OsEXP1, EXPA1, OsEXPA1, OsaEXPa1.16, RiExA
49865	34089405	Sevanthi A.M., Sinha S.K., V S., Rani M., Saini M.R., Kumari S., Kaushik M., Prakash C., K V., Singh G.P., Mohapatra T., Mandal P.K.	Integration of Dual Stress Transcriptomes and Major QTLs from a Pair of Genotypes Contrasting for Drought and Chronic Nitrogen Starvation Identifies Key Stress Responsive Genes in Rice.	Rice (N Y)	14(1)	49	2021	ACTPK1,ETG1,_,_,_,_,BT,NIGT1,_	OsACTPK1, ACTPK1-1, ACTPK1-2,OsETG1,,,UGT,,OsBT,  OsBTBZ2, BTBZ2,OsNIGT1, HINGE6, OsHINGE6,UGT
49866	34132908	Wang D., Zhou K., Xiang S., Zhang Q., Li R., Li M., Liang P., Farkhanda N., He G., Ling Y., Zhao F.	Identification, pyramid and candidate genes of QTLs for associated traits based on a dense erect panicle rice CSSL-Z749 and five SSSLs, three DSSLs and one TSSL.	Rice (N Y)	14(1)	55	2021	SAUR32,FAD8	OsSAUR32,OsFAD8, Osfad8
49867	34142383	Kim J.H., Lim S.D., Jang C.S.	Oryza sativa, C4HC3-type really interesting new gene (RING), OsRFPv6, is a positive regulator in response to salt stress by regulating Na+ absorption.	Physiol Plant			2021	AKT1,HAK7,CNGC13,RFPV6,SOS1,SKC1,NHX1,HKT1	OsAKT1, Os-AKT1,OsHAK7,OsCNGC13, OsCNGC1, OsCNGC3, CNGC3,OsRFPV-6,  OsRFPv6, OsRING135, RING135,OsSOS1, OsNHA1, NHA1, SOS1/NHX7, NHX7, OsNHX7,OsHKT8, HKT8, Os-HKT1;5, OsHKT1;5, HKT1;5, SKC1, qSKC-1(t), OsSKC1,OsNHX1, OcNHX1, OgNHX1, OrNHX1, OpNHX1, ObNHX1,OsHKT1, OsHKT2;1, HKT2;1, Ni (Nipponbare)-OsHKT1, Po (Pokkali)-HKT1, OsHKT1;1, HKT1;1
49868	34146237	Zhai Y., Wen Z., Fang W., Wang Y., Xi C., Liu J., Zhao H., Wang Y., Han S.	Functional analysis of rice OSCA genes overexpressed in the arabidopsis osca1 mutant due to drought and salt stresses.	Transgenic Res.			2021	OSCA1.3,OSCA1.2,OSCA2.5,OSCA1.1,ERD4,OSCA2.1,OSCA2.2	OsSTA149, OsOSCA1.3, OsIOSCA1.3, OsDDP5, DDP5, OsDDP5.1,OsOSCA1.2, OsIOSCA1.2, OsDDP6, DDP6, OsDDP6.1, OsDDP6.2,OsEnS-22, OsOSCA2.5, OsIOSCA2.5, OsDDP2, DDP2, OsDDP2.1, OsDDP2.2, OsERD, ERD,OsOSCA1.1, OsIOSCA1.1, OsDDP1, DDP1, OsDDP1.1, OsDDP1.2, OsDDP1.3, OsDDP1.4,OsOSCA3.1, OSCA3.1, OsIOSCA3.1, OsERD4, OsDDP7, DDP7, OsDDP7.1, OsDDP7.2,OsOSCA2.1, OsIOSCA2.1, OsDDP10, DDP10, OsDDP10.1,OsOSCA2.2, OsIOSCA2.2, OsDDP3, DDP3, OsDDP3.1, OsDDP3.2
49869	34201031	Watson A.T., Hassell-Hart S., Spencer J., Carr A.M.	Rice (<i>Oryza sativa</i>) TIR1 and 5'adamantyl-IAA Significantly Improve the Auxin-Inducible Degron System in <i>Schizosaccharomyces pombe</i>.	Genes (Basel)	12(6)		2021	FBOX206	OsAFB2, ABF2, OsAFB2-1, OsAFB2-2, OsFbox206, Os_F0492, OsTIR1, TIR1,  OsFBL16, FBL16
49870	34143292	Pandey B.K., Verma L., Prusty A., Singh A.P., Bennett M.J., Tyagi A.K., Giri J., Mehra P.	OsJAZ11 regulates phosphate starvation responses in rice.	Planta	254(1)	8	2021	MGD3,TIFY11C,TIFY10C,AOS2,PT9,PT8,GDPD5,SPX3,PAP3B,BHLH9,SPX2,AOS1,SPX5,SPX1,PHR2,PAP10A,TIFY11A	OsMGD3,OsJAZ2, JAZ2, OsJAZ 11, OsJAZ11, Os-JAZ11, JAZ11, OsTIFY11c, OsJAZ1, JAZ1,OsJAZ7, JAZ7, OsJAZ 8, OsJAZ8, Os-JAZ8, JAZ8, OsTIFY10c, OsTIFY10c/OsJAZ8,OsAOS2, CYP74A2, OsAOS, OsAOS1,OsPT9, PHT1-9, OsPht1;9,OsPT8, PHT1-8, OsPht1;8, Pht1;8, PHT1;8, OsPHT1;8,OsGDPD5,OsSPX3,OsPAP3b,OsbHLH009, bHLH009, OsMYC2, MYC2,OsSPX2,OsAOS, OsAOS1, CYP74A1, OsAOS2, AOS2,OsSPX5,OsSPX1,OsPHR2, Os-PHR2,OsPAP10a, PAP10, OsPAP2, PAP2,OsJAZ3, JAZ3, OsJAZ 9, OsJAZ9, Os-JAZ9, JAZ9, OsTIFY11a, OsJAZ6, JAZ6
49871	34126592	Xiang J., Qian K., Zhang Y., Chew J., Liang J., Zhu J., Zhang Y., Fan X.	OsLSD1.1 is involved in the photosystem II reaction and affects nitrogen allocation in rice.	Plant Physiol. Biochem.	166	246-257	2021		
49872	34214781	Sun Y., Hu Z., Wang X., Shen X., Hu S., Yan Y., Kant S., Xu G., Xue Y., Sun S.	Overexpression of OsPHR3 improves growth traits and facilitates nitrogen use efficiency under low phosphate condition.	Plant Physiol. Biochem.	166	712-722	2021		
49873	34249082	Gupta C., Ramegowda V., Basu S., Pereira A.	Using Network-Based Machine Learning to Predict Transcription Factors Involved in Drought Resistance.	Front Genet	12	652189	2021		
49874	34204124	Zhang H., Jang S.G., Lar S.M., Lee A.R., Cao F.Y., Seo J., Kwon S.W.	Genome-Wide Identification and Genetic Variations of the starch synthase Gene Family in Rice.	Plants (Basel)	10(6)		2021	SSIIC,SSI,SSIIB,FLO5,ALK,RISBZ1,SSIIIB,WX1,SSIV3,SSIVB,GIF1,SSIVA,GBSSII	OsSSIIc, SSII-1, SSII1 ,OsSSI, SSS 1, SSS1, SS1, OsSS1, SSSI, OsSSSI,OsSSIIb, OsSSII-2, SSII-2, SS2, OsSSSIIb, SS2b,OsSSIIIa, SSIII-2, OsSSIII-2, OsSS3A, SS3A, SS3a, OsSSSIIIa, SSIIIa, Flo5,alk, SSII-3, OsSSIIa, OsSSII-3, SSIIa, SSS2A, OsSSIIaChr6, SS2a,OsbZIP58, bZIP58, OsEnS-92, OsSMF1, SMF1, OsRISBZ1, RISBZ1/bZIP58,OsSSIIIb. SSIII-1, SSIIIa,wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx,SSIV-3, OsSSIV-3,OsSSIVb, SSIV-2, OsSSIV-2, SSIVb, SSIV-2, SSIV2, OsSSIV2,gif1, CIN2, OsCIN2, OsGIF1, WB1, OsWB1, GIF1/OsCIN2,OsSSIVa, SSIV-1, OsSSIV-1,GBSS2, OsGBSSII, OsGBSS2
49875	34112987	Xu R., Liu X., Li J., Qin R., Wei P.	Identification of herbicide resistance OsACC1 mutations via in planta prime-editing-library screening in rice.	Nat Plants	7(7)	888-892	2021	ACC1 	OsACC1 
49876	34181799	Huang X., Wang Z., Huang J., Peng S., Xiong D.	Mesophyll conductance variability of rice aquaporin knockout lines at different growth stages and growing environments.	Plant J.			2021	PIP1A,PIP1;2,PIP2A	OsPIP1a, OsPIP1;1, PIP1a, RWC-1, PIP1-1, RWC1, OsPIP1-1, PIP1;1, PIP1-5,OsPIP1;2, PIP1-2, OsPIP1-2,OsPIP2a, PIP2-1, PIP2a, PIP2.1, OsPIP2;1, PIP2;1, OsPIP2-1
49877	34089406	Wang Q., Zhu B., Chen C., Yuan Z., Guo J., Yang X., Wang S., Lv Y., Liu Q., Yang B., Sun C., Wang P., Deng X.	A Single Nucleotide Substitution of GSAM Gene Causes Massive Accumulation of Glutamate 1-Semialdehyde and Yellow Leaf Phenotype in Rice.	Rice (N Y)	14(1)	50	2021	YGL18 ,FC2,YGL98,YGL10,CAB1R,RBCS,PSBA,ELL,FGL,_,HEMA,PSAA,DVR,FC1,PSAN,YS53	ChlM, CHLM, MgMT, OsYGL18,OsChlM, OsCHLM, OsMgMT,OsFC2, OsGUN6-2, GUN6-2 ,OsChlD, ChlD, CHLD, OsCHLD, Ygl7, YGL3, OsvWA12, vWA12,CAO, OsCAO, CAO1, OsCAO1, Oslls1, Lls1, DVR, PGL,cab1R, LHCP, CAB, OsLhcb1, Lhcb1, Cab1, OsCAB1, Lhcb1b, OsLhcb1b, CAB2R,rbcS, OsRbcS, RBCS-C, RbcS2, OsRBCS2, RbcS1, OsRbcS2, OsrbcS1,PsbA, psbA, OsPsbA, PSBD1, OsPSBD1, psbD1,chlI, OsChlI, ChlI, CHLI, OsCHLI, OsCHLI/ELL, OsELL,fgl(fl), fl, fgl, OsFGL, OsPorB, PoPA, PORA, porA, OsPORA, PORB, OsPORB,ALAD, HEMB, OsALAD, OsHEMB, hemB,HEMA1, OsHEMA, GluTR, OsHEMA1, hemA,PsaA, psaA, PsAA1, psaA1,OsDVR,OsFC1, OsGUN6-1, GUN6-1,psaN, OspsaN, PN, OsPN,GSA, GSAT, HEML, OsGSA, OsGSAT, OsHEML, OsGSAM, GSAM, OsYS53
49878	34249046	Serna L.	The Role of Grass <i>MUTE</i> Orthologs in GMC Progression and GC Morphogenesis.	Front Plant Sci	12	678417	2021	FLP,BHLH51,BHLH55	OsFLP,OsbHLH051, bHLH051, bHLH51, OsFAMA, FAMA,OsbHLH055, bHLH055, bHLH55, OsMUTE, MUTE
49879	34112901	Saouros S., Mohan T.C., Cecchetti C., Lehmann S., Barrit J.D., Scull N.J., Simpson P., Alguel Y., Cameron A.D., Jones A.M.E., Byrne B.	Structural and functional insights into the mechanism of action of plant borate transporters.	Sci Rep	11(1)	12328	2021	BOR3	OsBOR3
49880	34315587	Yu Y., Yu J., Wang Q., Wang J., Zhao G., Wu H., Zhu Y., Chu C., Fang J.	Overexpression of the rice ORANGE gene OsOR negatively regulates carotenoid accumulation, leads to higher tiller numbers and decreases stress tolerance in Nipponbare rice.	Plant Sci.	310	110962	2021		
49881	34185169	Yang W., Zhao J., Zhang S., Chen L., Yang T., Dong J., Fu H., Ma Y., Zhou L., Wang J., Liu W., Liu Q., Liu B.	Genome-Wide Association Mapping and Gene Expression Analysis Reveal the Negative Role of OsMYB21 in Regulating Bacterial Blight Resistance in Rice.	Rice (N Y)	14(1)	58	2021	SH11,WRKY125	OsJAmyb, JAmyb, OsJAMyb, OsMYB21, MYB21, Os2R_MYB91, 2R_MYB91, OgSH11, OsSH11,OsWRKY125
49882	34115267	Bahariah B., Masani M.Y.A., Rasid O.A., Parveez G.K.A.	Multiplex CRISPR/Cas9-mediated genome editing of the FAD2 gene in rice: a model genome editing system for oil palm.	J Genet Eng Biotechnol	19(1)	86	2021	FAD2-1	OsFAD2, OsFAD2-1, OsaFAD2-1
49883	34206144	Wang Z., Chen Z., Zhang X., Wei Q., Xin Y., Zhang B., Liu F., Xia J.	Overexpression of <i>OsCASP1</i> Improves Calcium Tolerance in Rice.	Int J Mol Sci	22(11)		2021	CASP1	OsCASP1
49884	34098898	Park J.R., Kim E.G., Jang Y.H., Kim K.M.	Screening and identification of genes affecting grain quality and spikelet fertility during high-temperature treatment in grain filling stage of rice.	BMC Plant Biol.	21(1)	263	2021	SSIIIB,_,SSIVB,AMY3D,GBSSII,_,_,FLO6,SSIVA,_,_,WX1,SAUR33,BGLU8,AMY1A	OsSSIIIb. SSIII-1, SSIIIa,,OsSSIVb, SSIV-2, OsSSIV-2, SSIVb, SSIV-2, SSIV2, OsSSIV2,Amy3D/E*(RAmy3D/E), alpha Amy3, AmyII-4, AMY1.3, Amy3D, Amy3D/E*, RAmy3D/E, Amy3D_E, Amy8, aAmy3, RAmy3D, OsAmy3D, alphaAmy3, OsRamy3D,GBSS2, OsGBSSII, OsGBSS2,,,OsSIP4, SIP4, OsFLO6, OsSFq3, SFq3,OsSSIVa, SSIV-1, OsSSIV-1,CBSX10, OsCBSX10,CBSX8, OsCBSX8,wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx,OsSAUR33,Os3bglu8, Os3BGlu8 ,Amy1A/C*(RAmy1A/C), alpha Amy7, AMY1.1, Amy1A, RAmy1A/C, Amy1A/C*, Amy1, Amy1A_C, OsAmy1A, alphaAmy7-C, RAmy1A, AmyI-1, OsAmyI-1, OsRamy1A
49885	34257043	Xin X., Li X., Zhu J., Liu X., Chu Z., Shen J., Wu C.	OsMLH1 interacts with OsMLH3 to regulate synapsis and interference-sensitive crossover formation during meiosis in rice.	J Genet Genomics			2021		
49886	34143922	Kim Y.J., Kim M.H., Hong W.J., Moon S., Kim S.T., Park S.K., Jung K.H.	OsMTD2-mediated reactive oxygen species (ROS) balance is essential for intact pollen-tube elongation in rice.	Plant J.			2021	PLIM2B,PUB14,MTD2	OsPLIM2b, PLIM2b,OsPUB14,  OsPUB14, PUB14,OsMTD2, YK11, OsCrRLK1L11, CrRLK1L11, OsMRLK29, MRLK29, FLR6, OsFLR6
49887	34193908	Anandan A., Parameswaran C., Mahender A., Nayak A.K., Vellaikumar S., Balasubramaniasai C., Ali J.	Trait variations and expression profiling of OsPHT1 gene family at the early growth-stages under phosphorus-limited conditions.	Sci Rep	11(1)	13563	2021	PT1,PT3,PT8,PT10,PT4,PT12,PT13,PT6,PSTOL1,PT5,PT2,PT11	OsPT1, PHT1-1, OsPht1;1, Pht1;1, OsPHT1;1, PHT1;1,OsPT3, PHT1-3, OsPht1;3, OjPT1, PHT1;3,OsPT8, PHT1-8, OsPht1;8, Pht1;8, PHT1;8, OsPHT1;8,OsPT10, PHT1-10, OsPht1;10,OsPT4, PHT1-4, OsPht1;4, PHT1-2, PHT1;4, OsPHT1;4,OsPT12, PHT1-12, OsPht1;12,OsPT13, PHT1-13, OsPht1;13, ORYsa;PHT1;13,OsPT6, PHT1-6, OsPht1;6, OsLPT6:1, OsLPT1, OsPT6:1, Pht1;6, LPT6:1, LPT1, PT6:1,Pstol1, OsPSTOL1, OsPSTOL, PSTOL, Pstol1/OsPupK46-2, OsPupK46-2, Pup1, PHO,OsPT5, OsPht1;5, Pht1;5, PHT1-5,OsPT2, PTH1-2, OsPht1;2, PHT1;2, OsPHT1;2,OsPT11, PHT1-11, OsPht1;11, ORYsa;PHT1;11
49888	34173048	Banerjee A., Roychoudhury A.	Functional and molecular characterization of fluoride exporter (FEX) from rice and its constitutive overexpression in Nicotiana benthamiana to promote fluoride tolerance.	Plant Cell Rep.	40(9)	1751-1772	2021	FEX	OsFEX
49889	34110094	Wang Z., Chen D., Sun F., Guo W., Wang W., Li X., Lan Y., Du L., Li S., Fan Y., Zhou Y., Zhao H., Zhou T.	ARGONAUTE 2 increases rice susceptibility to rice black-streaked dwarf virus infection by epigenetically regulating HEXOKINASE 1 expression.	Mol. Plant Pathol.	22(9)	1029-1040	2021	PR1A,AGO2,PR1B	OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1, OsPR1b, PR1alpha, OsPR1alpha,OsAGO2,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1, OsPR1a, PR1a
49890	34165534	Sun Y., Song K., Liu L., Sun L., Qin Q., Jiang T., Zhou B., Zhu C., Xu G., Sun S., Xue Y.	Silencing of Sulfoquinovosyl Diacylglycerol Synthase 1 Impairs the Glycolipids Accumulation and Photosynthesis in Phosphate-deprived Rice.	J. Exp. Bot.			2021	SQD1,MGD2,PLDbeta1,DGD1A,MGD3,SQD2.1,PLDbeta2,PHR2,PLDalpha1	OsSQD1,OsMGD, MGD, OsMGD2, OsMGDG3, MGDG3,OsPLDbeta1, OsC2DP79, C2DP79,OsDGD1alpha, DGD1alpha, OsDGD1A,OsMGD3,OsSQD2.1,OsPLDbeta2, OsSTA86, OsC2DP27, C2DP27,OsPHR2, Os-PHR2,RPLD1, PLD1, OsPLDalpha1, OsC2DP2, C2DP2
49891	34147069	Yang L., Wang J., Han Z., Lei L., Liu H.L., Zheng H., Xin W., Zou D.	Combining QTL-seq and linkage mapping to fine map a candidate gene in qCTS6 for cold tolerance at the seedling stage in rice.	BMC Plant Biol.	21(1)	278	2021	BZIP54	OsbZIP54, OsFD6
49892	34032263	Okamura E., Ohtaka K., Nishihama R., Uchida K., Kuwahara A., Mochida K., Hirai M.Y.	Diversified amino acid-mediated allosteric regulation of phosphoglycerate dehydrogenase for serine biosynthesis in land plants.	Biochem. J.	478(12)	2217-2232	2021	PGDH1,PGDH3,PGDH2	OsPGDH1,OsPGDH3,OsPGDH2
49893	34366590	Arabia S., Shah M.N.A., Sami A.A., Ghosh A., Islam T.	Identification and expression profiling of proline metabolizing genes in <i>Arabidopsis thaliana</i> and <i>Oryza sativa</i> to reveal their stress-specific transcript alteration.	Physiol Mol Biol Plants	27(7)	1469-1485	2021	OAT,P5CS,PRODH,ALDH18B2,P5CR	OsOAT, delta-OAT,OsP5CS, P5CS1, OsP5CS1, OsALDH18B1, ALDH18B1, OsP5CS-1, P5CS-1,OsProDH, OsPDH, PDH,P5CS2, OsP5CS2, OsALDH18B2 ,OsP5CR
49894	34170442	Ren M., Huang M., Qiu H., Chun Y., Li L., Kumar A., Fang J., Zhao J., He H., Li X.	Genome-Wide Association Study of the Genetic Basis of Effective tiller number in Rice.	Rice (N Y)	14(1)	56	2021	WOX9C,WRKY74,AAP6,PILS6B,NAL1	OsWOX9C, DWL2, OsDWL2, DWL2/WOX9C,OsWRKY74,OsAAP6, OsAAP1, AAP1,OsPILS6b, PILS6b,nal1, cul1, GPS, SPIKE, SPIKE/LSCHL4/NAL1/GPS, SPIKE/NAL1, LSCHL4, OsNAL1
49895	34142002	Reeger J.E., Wheatley M., Yang Y., Brown K.M.	Targeted mutation of transcription factor genes alters metaxylem vessel size and number in rice roots.	Plant Direct	5(6)	e00328	2021	LHW,OSH6,ETT1	OsLHW,OsH6, HOS16,OsARF15, ARF15, OsETT1, ARF3b, OsARF3b, OsARF3-1, ARF3-1, OsARF3, ARF3, DLN154, OsDLN154
49896	34091752	Dong J., Zhou L., Feng A., Zhang S., Fu H., Chen L., Zhao J., Yang T., Yang W., Ma Y., Wang J., Zhu X., Liu Q., Liu B.	The OsOXO2, OsOXO3 and OsOXO4 Positively Regulate Panicle Blast Resistance in Rice.	Rice (N Y)	14(1)	51	2021	POX22.3,OXO2,CAL1,CHT11,_,AOS2,PR10A,NH1,_,BG3,OXO3,_,NCED1,RAB16A,NCED3,ICS1,PR1B,LEA3-1,OXO4,_	POX22.3, OSPER, OsPOX, POX, Pir3, prx111, POX22, OsPOX1, POX1, OsPOX22.3, OsPR9, PR9,Osoxo4, OsOxO2, OsGLP3-4, GLP3-4, OsCDP3.7, CDP3.7,OsCPT1, CPT1, DEFL7, OsDEFL7, OsDf-07, Df-07, OsPR12, PR12, DEF7, OsDEF7, OsAFP1, AFP1, OsPDF2.2, PDF2.2,Cht11, PR3, OsCHT11,PR5-1,OsAOS2, CYP74A2, OsAOS, OsAOS1,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2, DLN5, OsDLN5,  OsBTBA1, BTBA1,Lox2:Os:1, OsLOX9, LOX9, OsLOX8, LOX8, OsLOX2, LOX2, OsRLL, OsHI-LOX, HI-LOX, RLL2 LOX, RLL2, Lox2osPil, OsLOX2;1, LOX2;1, OsLOX1, OsLOX7, LOX7,PR2, OsPR2, OsBG3,OsOxO3, OsGLP3-5, GLP3-5, OsCDP3.8, CDP3.8,PR5,OSNCED1, OsNCED-1, OsNCED3, OsNced3, NCED3, OsNCED9, NCED9,Rab16A, rab21, RAB21, OsRab21, OsRAB21, OsRAB-21, OsRab16A, OsLEA29, rab16A, OsRAB16A,OSNCED3, OsNCED-3, OsNCED3, OsNCED3a, NCED3a, OsNCED4, NCED4, OsNECD2, OsNCED2b, NCED2b ,OsICS1, OsICS, ICS,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1, OsPR1a, PR1a,OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3, OsLEA3A, LEA3A,OsOxO4, OsGLP3-6, GLP3-6, OsCDP3.9, CDP3.9,C10728, OsChib3a, Chib3a, OsPR31, PR31, PR8, OsPR8
49897	34149769	Xin W., Wang J., Li J., Zhao H., Liu H., Zheng H., Yang L., Wang C., Yang F., Chen J., Zou D.	Candidate Gene Analysis for Nitrogen Absorption and Utilization in Japonica Rice at the Seedling Stage Based on a Genome-Wide Association Study.	Front Plant Sci	12	670861	2021	AMT1;2,ALAAT,NRT2.4,NAC14,TIFY11D,TIFY11E	OsAMT1;2, AMT1-2, Osamt1-3, "OsAMT1,3", OsAMT1;3, OsAMT1.3, OsAMT1.2, AMT1.2,alaAT, ALT-1, OsAlaAT1, AlaAT1,OsNRT2.4,ONAC014, ONAC14, OsNAC14, NAC14, OsNAC68, NAC68,OsTIFY11d, OsJAZ1, JAZ1, OsJAZ 12, OsJAZ12, JAZ12,OsJAZ 13, OsJAZ13,JAZ13, OsTIFY11e, OsJAZ13a, OsJAZ13b, OsJAZ13c, OsJAZ13d
49898	34110432	Ogasawara M., Miyazaki N., Monden G., Taniko K., Lim S., Iwata M., Ishii T., Ma J.F., Ishikawa R.	Role of qGZn9a in controlling grain zinc concentration in rice, Oryza sativa L.	Theor. Appl. Genet.	134(9)	3013-3022	2021	_,RH22,CYCD1;1,_,SDH7,_	MAPK, MAPK6,OsRH22,CycD1;1, CycD1;os;1, Orysa;CycD1;1, Orysa;CYCD1;1, OsCYCD2;1, CYCD2;1,,,
49899	34077267	Liu Y.N., Liu C.C., Zhu A.Q., Niu K.X., Guo R., Tian L., Wu Y.N., Sun B., Wang B.	<i>OsRAM2</i> function in lipid biosynthesis is required for arbuscular mycorrhizal symbiosis in rice.	Mol. Plant Microbe Interact.			2021	_,AM3,RAM2L,AM1,PT11,RAM2,_,_	GPAT,OsAM3, OsLysMe2, LysMe2,GPAT, OsRAM2L,OsAM1, prx53, OsPRX53,OsPT11, PHT1-11, OsPht1;11, ORYsa;PHT1;11,GPAT, OsRAM2,GPAT,GPAT
49900	34187351	Qin B., Lu T., Xu Y., Shen W., Liu F., Xie X., Li Y., Wang K., Li R.	Identification and characterization of An-4, a potential quantitative trait locus for awn development in rice.	BMC Plant Biol.	21(1)	298	2021	RR5,GA2OX5,GN1A	rr5, OsRR5, Rra4, OsRRA4,OsGA2ox5, 2-ODD32, Os2-ODD32, 2ODD32, Os2ODD32,Gn1a, OsCKX2, CKX2, ckx2, Gn1a/OsCKX2, Os CKX2, CKX2/Gn1a
49901	34100185	Seo D.H., Lee A., Yu S.G., Cui L.H., Min H.J., Lee S.E., Cho N.H., Kim S., Bae H., Kim W.T.	OsPUB41, a U-box E3 ubiquitin ligase, acts as a negative regulator of drought stress response in rice (Oryza Sativa L.).	Plant Mol. Biol.	106(4-5)	463-477	2021	CBSCLC6,UBC25,UPS	OsCBSCLC6, OsCBSCLC6a, OsCBSCLC6b, OsCLC6, CLC6,OsUBC25,OsUPS, OsPUB41, PUB41, CMPG1, OsCMPG1
49902	34129028	Yang J., Ji L., Liu S., Jing P., Hu J., Jin D., Wang L., Xie G.	The CaM1-Associated CCaMK-MKK1/6 cascade positively affects the lateral root growth through auxin signaling under salt stress in rice.	J. Exp. Bot.			2021	PIN9,DSG1,MPK6,IAA11,MSRMK2,MKK6,CAM1-1,DMI3,RAU1,MKK1	OsPIN9,OsMAPK6, MAPK6, OsMPK6, OsSIPK, SIPK, OsMAPK1, MAPK1, MPK1, OsMPK1, MPK6, OsDSG1,OsMPK6, OsDR6, DR6, OsMPK4, MPK4, OsMAPK4, MAPK4,OsIAA11,OsMSRMK2, OsMAPK5, OsMAP1, OsMPK3, OsBIMK1, OsMAPK2, MPK5, BIMK1, MAPK2, MAPK5, MPK3, OsMPK5, OsMAPK3, OsMAPK5b, MAPK3,OsMKK6, OsMEK1, MEK1, OsMAPKK6, MAPKK6, OsMPKK6, MPKK6, OsMAP1, MAP1,OsCaM1, OsCam1-1, OsCaM1-1, CAM3, Cam1-1, OsCAM1.1, CAM1.1,OsDMI3, OsCCaMK1, OsCCaMK, OsCCAMK, CCAMK,OsLAX1, OsRAU1, OsAUX1, LAX1, AUX1,OsMKK1, OsMEK2, MEK2, OsMAPKK1, MAPKK1, OsMAP2K2, MAP2K2
49903	34249055	Wang Z., Wang Q., Wei L., Shi Y., Li T., Hu K., Liu S., Zhong H., Liao J., Li Y., Zhang H., Huang Y.	UDP-<i>N</i>-Acetylglucosamine Pyrophosphorylase 2 (UAP2) and 1 (UAP1) Perform Synergetic Functions for Leaf Survival in Rice.	Front Plant Sci	12	685102	2021	GABA-T,SPL29,PR1A,ICL,UAP2,AMTR1,NAC58,SALT,PR10A	Osl2, l2, OsGABA-T,UAP1, OsUAP1, OsSPL29,OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1, OsPR1b, PR1alpha, OsPR1alpha,OsEnS-107, EnS-107, OsI85, I85, OsICL, Osl85, l43, Osl43, OsL85,OsUAP2,Osh36, OsH36, H36, OsAMTR1,OsNAP, NAP, ONAC058, ONAC58, Os PS1, PS1, OsCTb1, CTb1,salT*(sal1), SalT1*, sal1, Sal1, SALT, ML, SalT, OsSalT, OsJRL, JRL, Osl43, OsL43, OsMBL1, MBL1, OsJRL01, JRL01, OsJRL1, JRL1,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 
49904	34188147	Ereful N.C., Laurena A., Liu L.Y., Kao S.M., Tsai E., Greenland A., Powell W., Mackay I., Leung H.	Unraveling regulatory divergence, heterotic malleability, and allelic imbalance switching in rice due to drought stress.	Sci Rep	11(1)	13489	2021		
49905	34118747	Faizan M., Bhat J.A., Hessini K., Yu F., Ahmad P.	Zinc oxide nanoparticles alleviates the adverse effects of cadmium stress on Oryza sativa via modulation of the photosynthesis and antioxidant defense system.	Ecotoxicol. Environ. Saf.	220	112401	2021		
49906	34140607	Gong D., Zhang X., Yao J., Dai G., Yu G., Zhu Q., Gao Q., Zheng W.	Synergistic effects of bast fiber seedling film and nano-silicon fertilizer to increase the lodging resistance and yield of rice.	Sci Rep	11(1)	12788	2021		
49907	34112830	Singha K.M., Singh B., Pandey P.	Host specific endophytic microbiome diversity and associated functions in three varieties of scented black rice are dependent on growth stage.	Sci Rep	11(1)	12259	2021		
49908	34315588	Zhou T., Hua Y., Yue C., Huang J., Zhang Z.	Physiologic, metabolomic, and genomic investigations reveal distinct glutamine and mannose metabolism responses to ammonium toxicity in allotetraploid rapeseed genotypes.	Plant Sci.	310	110963	2021		
49909	34205396	Haider M.S., De Britto S., Nagaraj G., Gurulingaiah B., Shekhar R., Ito S.I., Jogaiah S.	Genome-Wide Identification, Diversification, and Expression Analysis of Lectin Receptor-Like Kinase (LecRLK) Gene Family in Cucumber under Biotic Stress.	Int J Mol Sci	22(12)		2021		
49910	34097698	Khong G.N., Le N.T., Pham M.T., Adam H., Gauron C., Le H.Q., Pham D.T., Colonges K., Pham X.H., Do V.N., Lebrun M., Jouannic S.	A cluster of Ankyrin and Ankyrin-TPR repeat genes is associated with panicle branching diversity in rice.	PLoS Genet.	17(6)	e1009594	2021	TPR161,TPR116,TPR90,TPR215,TPR3,TPR2,TPR42,TPR212,ANK2,TPR171,TPR46,TPR211,TPR45,TPR172,ANK1 ,TPR173,TPR43,TPR92	OsTPR161,OsTPR116,OsTPR090, TPR090, OsTPR90,OsTPR215,OsTPR003, TPR003, OsTPR3,OsTPR002, TPR002, OsTPR2,OsTPR042, TPR042, OsTPR42,OsTPR212,OsANK2, OsTPR047, TPR047, OsTPR47, TPR47,OsTPR171,OsTPR046, TPR046, OsTPR46,OsTPR211,OsTPR045, TPR045, OsTPR45,OsTPR172,OsANK1 ,OsTPR173,OsTPR043, TPR043, OsTPR43,OsTPR092, TPR092, OsTPR92, PLS15, OsPLS15
49911	34168171	Kok A.D., Wan Abdullah WMAN., Tang C.N., Low L.Y., Yuswan M.H., Ong-Abdullah J., Tan N.P., Lai K.S.	Sodium lignosulfonate improves shoot growth of Oryza sativa via enhancement of photosynthetic activity and reduced accumulation of reactive oxygen species.	Sci Rep	11(1)	13226	2021		
49912	34181437	Chen Y.C., Hu C.C., Chang F.Y., Chen C.Y., Chen W.L., Tung C.W., Shen W.C., Wu C.W., Cheng A.S., Liao D.J., Liao C.Y., Liu L.D., Chung C.L.	Marker-assisted development and evaluation of monogenic lines of rice cv. Kaohsiung 145 carrying blast resistance genes.	Plant Dis.			2021		
49913	34167554	Zhang K., Zhuang X., Dong Z., Xu K., Chen X., Liu F., He Z.	The dynamics of N6-methyladenine RNA modification in interactions between rice and plant viruses.	Genome Biol.	22(1)	189	2021		
49914	34149783	Hu L., Chen W., Yang W., Li X., Zhang C., Zhang X., Zheng L., Zhu X., Yin J., Qin P., Wang Y., Ma B., Li S., Yuan H., Tu B.	<i>OsSPL9</i> Regulates grain number and grain yield in Rice.	Front Plant Sci	12	682018	2021		
49915	34200345	Jan R., Aaqil Khan M., Asaf S., Lubna, Park J.R., Lee I.J., Kim K.M.	Flavonone 3-hydroxylase Relieves Bacterial Leaf Blight Stress in Rice via Overaccumulation of Antioxidant Flavonoids and Induction of Defense Genes and Hormones.	Int J Mol Sci	22(11)		2021		
49916	34036580	Sandhu J., Irvin L., Liu K., Staswick P., Zhang C., Walia H.	Endoplasmic reticulum stress pathway mediates the early heat stress response of developing rice seeds.	Plant Cell Environ.	44(8)	2604-2624	2021		
49917	34167489	Lian L., Lin Y., Wei Y., He W., Cai Q., Huang W., Zheng Y., Xu H., Wang F., Zhu Y., Luo X., Xie H., Zhang J.	PEPC of sugarcane regulated glutathione S-transferase and altered carbon-nitrogen metabolism under different N source concentrations in Oryza sativa.	BMC Plant Biol.	21(1)	287	2021	PR1A,ALPHA-KGDH,PPC2B,CAB2R,GSTL1,LOX1,LHCB1.1,_,CAB1R,PSAL,PK1,PPC4,ICL,CYTME2,PPC2,PSR1,LHCA2,GSTU4,ABC1,_,PFK1,AMY1A,CS1,IDHA	OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1, OsPR1b, PR1alpha, OsPR1alpha,alpha-KGDH,Osppc2b, ppc2b,Oscab2R, CAB-2, OsLhcp, Lhcb1, Lhcb1a, OsLhcb1, OsLhcb1a ,OsGSTL1, GST1,OsLOX1, OsLOX5, OsLOX2, LOX2,Lhcb1.1 OsLhcb1.1, lhcB,osppdka, ppdka,cab1R, LHCP, CAB, OsLhcb1, Lhcb1, Cab1, OsCAB1, Lhcb1b, OsLhcb1b, CAB2R,PsaL, OsPSAL,OsPK1,PEPC-2, Osppc4, ppc4,OsEnS-107, EnS-107, OsI85, I85, OsICL, Osl85, l43, Osl43, OsL85,OscytME2, cytME2,Osppc3, Osppc2, ppc3,ppc2,PSR1, NiR, OsNiR, OsNIR1, NIR1, FD-NiR, OsNiR2,lhcA, Lhca2, OsLhca2,OsGSTU4, GST4,OsABC1, SPL32, OsSPL32, OsGLU, OsFd-GOGAT, Fd-GOGAT, ABC1/ OsFd-GOGAT ,OsPR1, OsPR1a, PR1a, PR1, OsPR1b, PR1b,OsPFK01, PFK01, OsPFK1,Amy1A/C*(RAmy1A/C), alpha Amy7, AMY1.1, Amy1A, RAmy1A/C, Amy1A/C*, Amy1, Amy1A_C, OsAmy1A, alphaAmy7-C, RAmy1A, AmyI-1, OsAmyI-1, OsRamy1A,OsCS1,OsIDHa, ICDHc
49918	34149763	Kok A.D., Mohd Yusoff NF., Sekeli R., Wee C.Y., Lamasudin D.U., Ong-Abdullah J., Lai K.S.	Pluronic F-68 Improves Callus Proliferation of Recalcitrant Rice Cultivar <i>via</i> Enhanced Carbon and Nitrogen Metabolism and Nutrients Uptake.	Front Plant Sci	12	667434	2021		
49919	34142247	Mori I.C., Arias-Barreiro CR., Ooi L., Lee N.H., Sobahan M.A., Nakamura Y., Hirai Y., Murata Y.	Cadmium uptake via apoplastic bypass flow in Oryza sativa.	J. Plant Res.	134(5)	1139-1148	2021		
49920	33940615	Ko S.S., Li M.J., Ho Y.C., Yu C.P., Yang T.T., Lin Y.J., Hsing H.C., Chen T.K., Jhong C.M., Li W.H., Sun-Ben Ku M.	Rice transcription factor GAMYB modulates bHLH142 and is homeostatically regulated by TDR during anther tapetal and pollen development.	J. Exp. Bot.	72(13)	4888-4903	2021		
49921	34198474	Motmainna M., Juraimi A.S., Uddin M.K., Asib N.B., Islam AKMM., Ahmad-Hamdani MS., Berahim Z., Hasan M.	Physiological and Biochemical Responses of <i>Ageratum conyzoides</i>, <i>Oryza sativa</i> f. <i>spontanea</i> (Weedy Rice) and <i>Cyperus iria</i> to <i>Parthenium hysterophorus</i> Methanol Extract.	Plants (Basel)	10(6)		2021		
49922	34169463	Chen M., Li Z., Huang J., Yan Y., Wu T., Bian M., Zhou J., Wang Y., Lyv Y., Hu G., Jin Y.M., Huang K., Guo L., Jiang W., Du X.	Dissecting the meteorological and genetic factors affecting rice grain quality in Northeast China.	Genes Genomics	43(8)	975-986	2021		
49923	34315684	Qu A., Xu Y., Yu X., Si Q., Xu X., Liu C., Yang L., Zheng Y., Zhang M., Zhang S., Xu J.	Sporophytic control of anther development and male fertility by glucose-6-phosphate/phosphate translocator 1 (OsGPT1) in rice.	J Genet Genomics			2021		
49924	34059654	Hou D., Li L., Ma T., Pei J., Zhao Z., Lu M., Wu A., Lin X.	The SOC1-like gene BoMADS50 is associated with the flowering of Bambusa oldhamii.	Hortic Res	8(1)	133	2021		
49925	34129189	Huang L., Gu Z., Chen Z., Yu J., Chu R., Tan H., Zhao D., Fan X., Zhang C., Li Q., Liu Q.	Improving rice eating and cooking quality by coordinated expression of the major starch synthesis-related genes, SSII and Wx, in endosperm.	Plant Mol. Biol.	106(4-5)	419-432	2021		
49926	34098428	Sagonda T., Adil M.F., Sehar S., Rasheed A., Joan H.I., Ouyang Y., Shamsi I.H.	Physio-ultrastructural footprints and iTRAQ-based proteomic approach unravel the role of Piriformospora indica-colonization in counteracting cadmium toxicity in rice.	Ecotoxicol. Environ. Saf.	220	112390	2021		
49927	34267770	Odongo P.J., Onaga G., Ricardo O., Natsuaki K.T., Alicai T., Geuten K.	Insights Into Natural Genetic Resistance to Rice Yellow Mottle Virus and Implications on Breeding for Durable Resistance.	Front Plant Sci	12	671355	2021		
49928	34032104	Cheng L.L., Huang Y.C., Wang C.R., Liu Z.Q., Huang Y.Z., Zhang C.B., Wagn X.L.	[Mechanism of <i>S</i>-allyl-L-cysteine Alleviating Cadmium Stress in Seedling Roots and Buds of Rice Seedlings].	Huan Jing Ke Xue	42(6)	3037-3045	2021		
49929	34216830	Yang W., Wu K., Wang B., Liu H., Guo S., Guo X., Luo W., Sun S., Ouyang Y., Fu X., Chong K., Zhang Q., Xu Y.	The RING E3 ligase CLG1 targets GS3 for degradation via the endosome pathway to determine grain size.in rice.	Mol Plant			2021		
49930	34205521	Chen Z., Li Y., Li P., Huang X., Chen M., Wu J., Wang L., Liu X., Li Y.	MircroRNA Profiles of Early Rice Inflorescence Revealed a Specific miRNA5506 Regulating Development of Floral Organs and Female Megagametophyte in Rice.	Int J Mol Sci	22(12)		2021		
49931	34082694	Shu X., Wang A., Jiang B., Jiang Y., Xiang X., Yi X., Li S., Deng Q., Wang S., Zhu J., Liang Y., Liu H., Zou T., Wang L., Li P., Zheng A.	Genome-wide association study and transcriptome analysis discover new genes for bacterial leaf blight resistance in rice (Oryza sativa L.).	BMC Plant Biol.	21(1)	255	2021		
49932	34112311	Fukuda A., Hirose T., Hashida Y., Aoki N., Nagano A.J.	Selection of transcripts related to low-temperature tolerance using RNA sequencing from F2 plants between japonica and indica rice (Oryza sativa L.) cultivars.	Funct. Plant Biol.			2021		
49933	34186283	Gupta B.K., Sahoo K.K., Anwar K., Nongpiur R.C., Deshmukh R., Pareek A., Singla-Pareek SL.	Silicon nutrition stimulates Salt-Overly Sensitive (SOS) pathway to enhance salinity stress tolerance and yield in rice.	Plant Physiol. Biochem.	166	593-604	2021		
49934	34178464	El Sayed MAA., Kheir A.M.S., Hussein F.A., Ali E.F., Selim M.E., Majrashi A., El Shamey EAZ.	Developing new lines of Japonica rice for higher quality and yield under arid conditions.	PeerJ	9	e11592	2021		
49935	34177996	Liu S., Zhong H., Wang Q., Liu C., Li T., Peng Z., Li Y., Zhang H., Liao J., Huang Y., Wang Z.	Global Analysis of UDP Glucose Pyrophosphorylase (UDPGP) Gene Family in Plants: Conserved Evolution Involved in Cell Death.	Front Plant Sci	12	681719	2021		
49936	34165836	Polko J.K., Potter K.C., Burr C.A., Schaller G.E., Kieber J.J.	Meta-analysis of transcriptomic studies of cytokinin-treated rice roots defines a core set of cytokinin response genes.	Plant J.			2021		
49937	34191848	Win E.P., Win K.K., Bellingrath-Kimura SD., Oo A.Z.	Influence of rice varieties, organic manure and water management on greenhouse gas emissions from paddy rice soils.	PLoS ONE	16(6)	e0253755	2021		
49938	34165797	Jiang Z., Tu H., Bai B., Yang C., Zhao B., Guo Z., Liu Q., Zhao H., Yang W., Xiong L., Zhang J.	Combining UAV-RGB high-throughput field phenotyping and genome-wide association study to reveal genetic variation of rice germplasms in dynamic response to drought stress.	New Phytol.			2021		
49939	34183783	Lee B.H., Wang R., Moberg I.M., Reeder S.H., Amom P., Tan M.H., Amstutz K., Chandna P., Helton A., Andrianova E.P., Zhulin I.B., Dobritsa A.A.	A species-specific functional module controls formation of pollen apertures.	Nat Plants	7(7)	966-978	2021		
49940	34202279	Nampei M., Jiadkong K., Chuamnakthong S., Wangsawang T., Sreewongchai T., Ueda A.	Different Rhizospheric pH Conditions Affect Nutrient Accumulations in Rice under Salinity Stress.	Plants (Basel)	10(7)		2021		
49941	34262576	Zhao W., Zhang L.L., Xu Z.S., Fu L., Pang H.X., Ma Y.Z., Min D.H.	Genome-Wide Analysis of <i>MADS-box</i> Genes in Foxtail Millet (<i>Setaria italica</i> L.) and Functional Assessment of the Role of <i>SiMADS51</i> in the Drought Stress Response.	Front Plant Sci	12	659474	2021		
49942	34251582	Zhang H., Wang Y., Deng C., Zhao S., Zhang P., Feng J., Huang W., Kang S., Qian Q., Xiong G., Chang Y.	High-quality genome assembly of Huazhan and Tianfeng, the parents of an elite rice hybrid Tian-you-hua-zhan.	Sci China Life Sci			2021		
49943	34204643	Chen H.J., Dai F.J., Chen C.Y., Fan S.L., Zheng J.H., Huang Y.C., Chau C.F., Lin Y.S., Chen C.S.	Evaluating the Antioxidants, Whitening and Antiaging Properties of Rice Protein Hydrolysates.	Molecules	26(12)		2021		
49944	34178000	Li R.Q., Jiang M., Huang J.Z., M?ller IM., Shu Q.Y.	Mutations of the <i>Genomes Uncoupled 4</i> Gene Cause ROS Accumulation and Repress Expression of Peroxidase Genes in Rice.	Front Plant Sci	12	682453	2021		
49945	34101285	Ma Z., Qin G., Zhang Y., Liu C., Wei M., Cen Z., Yan Y., Luo T., Li Z., Liang H., Huang D., Deng G.	Bacterial leaf streak 1 encoding a mitogen-activated protein kinase confers resistance to bacterial leaf streak in rice.	Plant J.			2021		
49946	34149750	Huang L., Wang F., Liu Y., Zhang Y.	Night Temperature Determines the Interannual Yield Variation in Hybrid and Inbred Rice Widely Used in Central China Through Different Effects on Reproductive Growth.	Front Plant Sci	12	646168	2021		
49947	33838011	Wang R., Yang X., Guo S., Wang Z., Zhang Z., Fang Z.	miR319-targeted OsTCP21 and OsGAmyb regulate tillering and grain yield in rice.	J Integr Plant Biol	63(7)	1260-1272	2021		
49948	34145345	Lang H., He Y., Zeng F., Xu F., Zhao M., Ma D.	Comparative transcriptomic and physiological analyses of weedy rice and cultivated rice to identify vital differentially expressed genes and pathways regulating the ABA response.	Sci Rep	11(1)	12881	2021		
49949	34193032	Xie Q., Xu J., Huang K., Su Y., Tong J., Huang Z., Huang C., Wei M., Lin W., Xiao L.	Dynamic formation and transcriptional regulation mediated by phytohormones during chalkiness formation in rice.	BMC Plant Biol.	21(1)	308	2021		
49950	34117939	He Y., Zhang X., Shi Y., Xu X., Li L., Wu J.L.	PREMATURE SENESCENCE LEAF 50 Promotes Heat Stress Tolerance in Rice (Oryza sativa L.).	Rice (N Y)	14(1)	53	2021	APX1,AOX1C,NOE1,AOX1B,SODA1,CATB,SPL28,AOX1A,SODB,APX2	OsAPX1, APXa, OsAPXa, OsAPx01, OsAPx1, OSAPX1, APx1, cAPX, APX2, cAPXa, OscAPXa,OsAOX1c,CATC, OsCat, OsCatC, OsCATC, OsNOE1, noe1, catC, OsCATC, CAT3, OsCAT3, LLM9428, OsLLM9428,AOX1b, OsAOX1b,SodA1, OsSODA1, Mn-SOD, Mn- SOD, OsMSD, MnSOD, OsMnSOD, MnSOD1, OsMnSOD1,CatB, CAT-B, OsCatB, OsCATB, OsCAT1B, CAT1B, CAT2, OsCAT2,OsSPL28, PSL50, OsPSL50, AP1M1, OsAP1M1,Ao1-1, AOX1a, OsAOX1a, AOX 1a,SodB, Fe-SOD, Fe- SOD, OsFe-SOD, Fe+-SOD, OsFe+-SOD, OsFe-SODa, OsFe-SODb, OsFeSODb, FeSODb, OsFSD1.2, FSD1.2, FeSOD2, OsFSD2, FSD2, OsFSD1, FSD1, ALM1, OsALM1,OsAPX2, OsAPx02, APXb, OsAPx2, OSAPX2, APx2, cAPX, OsAPX1, APX1
49951	34239527	Ma Y., Chen R.	Nitrogen and Phosphorus Signaling and Transport During Legume-Rhizobium Symbiosis.	Front Plant Sci	12	683601	2021		
49952	34156492	Dumitrascu C., Fiamegos Y., de la Calle Gunti?as MB.	Feasibility study on the use of elemental profiles to authenticate aromatic rice: the case of Basmati and Thai rice.	Anal Bioanal Chem			2021		
49953	34189630	Liu X., Liu H., Zhang Y., He M., Li R., Meng W., Wang Z., Li X., Bu Q.	Fine-tuning flowering time via Genome Editing of Upstream Open Reading Frames of heading date 2 in Rice.	Rice (N Y)	14(1)	59	2021		
49954	34131824	Cui D., Tang C., Lu H., Li J., Ma X., A X., Han B., Yang Y., Dong C., Zhang F., Dai L., Han L.	Genetic differentiation and restricted gene flow in rice landraces from Yunnan, China: effects of isolation-by-distance and isolation-by-environment.	Rice (N Y)	14(1)	54	2021		
49955	34209672	Liang Y., Biswas S., Kim B., Bailey-Serres J., Septiningsih E.M.	Improved Transformation and Regeneration of <i>Indica</i> Rice: Disruption of <i>SUB1A</i> as a Test Case via CRISPR-Cas9.	Int J Mol Sci	22(13)		2021		
49956	34177981	Khan M.A., Hamayun M., Asaf S., Khan M., Yun B.W., Kang S.M., Lee I.J.	Rhizospheric <i>Bacillus</i> spp. Rescues Plant Growth Under Salinity Stress <i>via</i> Regulating Gene Expression, Endogenous Hormones, and Antioxidant System of <i>Oryza sativa</i> L.	Front Plant Sci	12	665590	2021		
49957	34205108	Zheng Y., Mwamburi M.F., Liu H., Wang F.	Loss of Function of <i>OsARG</i> Resulted in Pepper-Shaped Husk in <i>Indica</i> Rice.	Life (Basel)	11(6)		2021		
49958	34149757	Kakei Y., Masuda H., Nishizawa N.K., Hattori H., Aung M.S.	Elucidation of Novel <i>cis</i>-Regulatory Elements and Promoter Structures Involved in Iron Excess Response Mechanisms in Rice Using a Bioinformatics Approach.	Front Plant Sci	12	660303	2021		
49959	34315600	Sudo M.P.S., Yesudasan R., Neik T.X., Masilamany D., Jayaraj J., Teo S.S., Rahman S., Song B.K.	The details are in the genome-wide SNPs: Fine scale evolution of the Malaysian weedy rice.	Plant Sci.	310	110985	2021		
49960	34195268	Hu B.L., Li X., Wu T., Huang D.R., Huang F.L., Yin J.H., Wu Y.S.	Identification and Validation of QTLs for Macronutrient Contents in Brown and milled rice Using Two Backcross Populations between <i>Oryza sativa</i> and <i>O. rufipogon</i>.	Biomed Res Int	2021	5561734	2021		
49961	34116127	Sharma D., Afzal S., Singh N.K.	Nanopriming with phytosynthesized zinc oxide nanoparticles for promoting germination and starch metabolism in rice seeds.	J. Biotechnol.	336	64-75	2021		
49962	34203092	Jiang X.Q., Yang X., Lu B.R.	Increased Longevity and Dormancy of Soil-Buried Seeds from Advanced Crop-Wild Rice Hybrids Overexpressing the <i>EPSPS</i> Transgene.	Biology (Basel)	10(6)		2021		
49963	34199720	Panda S., Majhi P.K., Anandan A., Mahender A., Veludandi S., Bastia D., Guttala S.B., Singh S.K., Saha S., Ali J.	Proofing Direct-Seeded Rice with Better Root Plasticity and Architecture.	Int J Mol Sci	22(11)		2021		
49964	34111524	Panibe J.P., Wang L., Li J., Li M.Y., Lee Y.C., Wang C.S., Ku M.S.B., Lu M.J., Li W.H.	Chromosomal-level genome assembly of the semi-dwarf rice Taichung Native 1, an initiator of Green Revolution.	Genomics	113(4)	2656-2674	2021		
49965	33864461	Li Y., Li J., Yu Y., Dai X., Gong C., Gu D., Xu E., Liu Y., Zou Y., Zhang P., Chen X., Zhang W.	The tonoplast-localized transporter OsNRAMP2 is involved in iron homeostasis and affects seed germination in rice.	J. Exp. Bot.	72(13)	4839-4852	2021		
49966	34276752	Zeng D., Cui J., Yin Y., Xiong Y., Liu M., Guan S., Cheng D., Sun Y., Lu W.	Metabolomics Analysis in Different Development Stages on SP0 Generation of Rice Seeds After Spaceflight.	Front Plant Sci	12	700267	2021		
49967	34185803	Wu J., Fan H., Hu Y., Guo H., Lin H., Jiao Y., Lu Z., Du S., Liu X., Shahid M.Q.	Identification of stable pollen development related reference genes for accurate qRT-PCR analysis and morphological variations in autotetraploid and diploid rice.	PLoS ONE	16(6)	e0253244	2021		
49968	34205855	Wang B., Zhu X., Guo X., Qi X., Feng F., Zhang Y., Zhao Q., Han D., Sun H.	Nitrate Modulates lateral root Formation by Regulating the Auxin Response and Transport in Rice.	Genes (Basel)	12(6)		2021		
49969	34220889	Yang S., Yuan D., Zhang Y., Sun Q., Xuan Y.H.	BZR1 Regulates Brassinosteroid-Mediated Activation of <i>AMT1;2</i> in Rice.	Front Plant Sci	12	665883	2021		
49970	34114241	Mujiono K., Tohi T., Sobhy I.S., Hojo Y., Shinya T., Galis I.	Herbivore-induced and constitutive volatiles are controlled by different oxylipin-dependent mechanisms in rice.	Plant Cell Environ.	44(8)	2687-2699	2021		
49971	34193914	Sekhar S., Kumar J., Mohanty S., Mohanty N., Panda R.S., Das S., Shaw B.P., Behera L.	Identification of novel QTLs for grain fertility and associated traits to decipher poor grain filling of basal spikelets in dense panicle rice.	Sci Rep	11(1)	13617	2021		
49972	34173050	Melandri G., AbdElgawad H., Flokov? K., Jamar D.C., Asard H., Beemster G.T.S., Ruyter-Spira C., Bouwmeester H.J.	drought tolerance in selected aerobic and upland rice varieties is driven by different metabolic and antioxidative responses.	Planta	254(1)	13	2021		
49973	34426386	Saha I., Hasanuzzaman M., Adak M.K.	Abscisic acid priming regulates arsenite toxicity in two contrasting rice (Oryza sativa L.) genotypes through differential functioning of sub1A quantitative trait loci.	Environ. Pollut.	287	117586	2021		
49974	34121203	Kumar A., Nayak S., Ngangkham U., Sah R.P., Lal M.K., Tp A., Behera S., Swain P., Behera L., Sharma S.	A single nucleotide substitution in the SPDT transporter gene reduced phytic acid and increased mineral bioavailability from Rice grain (Oryza sativa L.).	J. Food Biochem.	45(7)	e13822	2021	SULTR3;4	OsSultr3;4, OsSul3;4, OsaSULTR3;4, SPDT, OsSPDT
49975	34315585	de Luna-Valdez L., Chenge-Espinosa M., Hern?ndez-Mu?oz A., Cordoba E., L?pez-Leal G., Castillo-Ram?rez S., Le?n P.	Reassessing the evolution of the 1-deoxy-D-xylulose 5-phosphate synthase family suggests a possible novel function for the DXS class 3 proteins.	Plant Sci.	310	110960	2021		
49976	34176023	Wu G., Zhang Y., Wang B., Li K., Lou Y., Zhao Y., Liu F.	Proteomic and Transcriptomic Analyses Provide Novel Insights into the Crucial Roles of Host-Induced Carbohydrate Metabolism Enzymes in Xanthomonas oryzae pv. oryzae Virulence and Rice-Xoo Interaction.	Rice (N Y)	14(1)	57	2021		
49977	34327325	Chen T.C., Chern M., Steinwand M., Ruan D., Wang Y., Isharani A., Ronald P.	Paladin, a tyrosine phosphatase-like protein, is required for <i>XA21</i>-mediated immunity in rice.	Plant Commun	2(4)	100215	2021	SXI2,XA21	OsPALD, PALD, OsSXI2,Xa21*, Xa21, OsXA21
49978	34202818	Oo K.S., Krishnan S.G., Vinod K.K., Dhawan G., Dwivedi P., Kumar P., Bhowmick P.K., Pal M., Chinnuswamy V., Nagarajan M., Bollinedi H., Ellur R.K., Singh A.K.	Molecular Breeding for Improving Productivity of <i>Oryza sativa</i> L. cv. Pusa 44 under Reproductive Stage Drought Stress through Introgression of a Major QTL, <i>qDTY12.1</i>.	Genes (Basel)	12(7)		2021		
49979	34191184	Yarra R., Wei W.	The NAC-type transcription factor GmNAC20 improves cold, salinity tolerance, and lateral root formation in transgenic rice plants.	Funct. Integr. Genomics	21(3-4)	473-487	2021		
49980	34146939	Kumar U., Kaviraj M., Rout S., Chakraborty K., Swain P., Nayak P.K., Nayak A.K.	Combined application of ascorbic acid and endophytic N-fixing Azotobacter chroococcum Avi2 modulates photosynthetic efficacy, antioxidants and growth-promotion in rice under moisture deficit stress.	Microbiol. Res.	250	126808	2021		
49981	34174936	Hu Z., Wang Y., Liu J., Li Y., Wang Y., Huang J., Ai Y., Chen P., He Y., Aftab M.N., Wang L., Peng L.	Integrated NIRS and QTL assays reveal minor mannose and galactose as contrast lignocellulose factors for biomass enzymatic saccharification in rice.	Biotechnol Biofuels	14(1)	144	2021		
49982	34186295	Hull R., Choi J., Paszkowski U.	Conditioning plants for arbuscular mycorrhizal symbiosis through DWARF14-LIKE signalling.	Curr. Opin. Plant Biol.	62	102071	2021	ASP1,D14,SMAX1,D3,KAI2	OsLIS-L1, OsWD40-155, ASP1, TPR2, OsTPR2, OsREL2, REL2, OsTPL3, TPL3, OsTPL2, TPL2, ASP-LSL,d14(d10), dwf13, d10, d14, D88, HTD2, OsHTD2, OsD14, qPPB3, D88/D14, HTD4,OsSMAX1,d3, dwf3, D3/OsMAX2, Os_F0760, SOL1, OsORE9, ORE9, MAX2, OsRFPH2-10, RFPH2-10, OsD3,  OsFBL27, FBL27,D14L, OsD14L, OsKAI2
49983	33939808	Wu G., Ma L., Yuan C., Dai J., Luo L., Poudyal R.S., Sayre R.T., Lee C.H.	Formation of light-harvesting complex II aggregates from LHCII-PSI-LHCI complexes in rice plants under high light.	J. Exp. Bot.	72(13)	4938-4948	2021		
49984	34170614	Tao H., Shi X., He F., Wang D., Xiao N., Fang H., Wang R., Zhang F., Wang M., Li A., Liu X., Wang G.L., Ning Y.	Engineering broad-spectrum disease-resistant rice by editing multiple susceptibility genes.	J Integr Plant Biol			2021		
49985	34208354	V?zquez-Glar?a A., Eichler-L?bermann B., Loiret F.G., Ortega E., Kavka M.	Root-System Architectures of Two Cuban Rice Cultivars with Salt Stress at Early Development Stages.	Plants (Basel)	10(6)		2021		
49986	33892513	Li J., Zeng Y., Pan Y., Zhou L., Zhang Z., Guo H., Lou Q., Shui G., Huang H., Tian H., Guo Y., Yuan P., Yang H., Pan G., Wang R., Zhang H., Yang S., Guo Y., Ge S., Li J., Li Z.	Stepwise selection of natural variations at CTB2 and CTB4a improves cold adaptation during domestication of japonica rice.	New Phytol.	231(3)	1056-1072	2021	CTB4A,CTB2	OsRLCK127, RLCK127, OsCTB4a, qCTB4-1,OsCTB2
49987	34031889	Wang D., Li J., Sun L., Hu Y., Yu J., Wang C., Zhang F., Hou H., Liang W., Zhang D.	Two rice MYB transcription factors maintain male fertility in response to photoperiod by modulating sugar partitioning.	New Phytol.	231(4)	1612-1629	2021	STP22,CIN5,INT3,SWEET5,TPP7,SWEET6A,MST6,CIN3,CSA2,CSA,AZT3,TPS8,TPP3,STP17,TPP1,TMT2,HWH2,SWEET6B,PLT3,STP27,PLT1	OsSTP22,OsCIN4, OsCIN5, CIN4, CWIN4, OsCWIN4,OsINT3,OsSWEET5,OsTPP7,OsSWEET6a, SWEET6a,OsMST6, STP6, OsSTP6,OSINV4, OsINV4, INV4, OsCIN3,OsCSA2, MYB5, OsMyb5, OSMYB5, Os2R_MYB58, 2R_MYB58,csa, OsCSA,OsAZT3,OsTPS8, OsTPS1, TPS1,OsTPP3, TPS3, OsTPS3,OsSTP17,OsTPP1, OsTPS, TPP,OsTMT2, AZT1, OsAZT1,OsHWH2, AZT5, OsAZT5,OsSWEET6b, SWEET6b,OsPLT3,OsSTP27,OsPLT1
49988	34203082	He Y., Zhu M., Li Z., Jiang S., He Z., Xu S., Chen X., Hu Z., Zhang Z.	<i>IPA1</i> Negatively Regulates Early Rice Seedling Development by Interfering with Starch Metabolism via the GA and <i>WRKY</i> Pathways.	Int J Mol Sci	22(12)		2021	AMY3C,AMY1C,AMY3E,SUT1,WRKY51,WFP,GA2OX6,GA2OX8,AMY1A,AMY3B,WRKY71,GA2OX9,GA2OX3,GNP1,GAMYB,AMY3D	Amy3A/B/C*(RAmy3A/B/C), AmyII-6, AMY1.7, Amy3C, RAmy3A/B/C, Amy3A/B/C*, Amy7, AMY3B, RAmy3C, OsAmy3B,Amy1A/C*(RAmy1A/C), alpha Amy10, Amy1C, RAmy1A/C, Amy1A/C*, Amy3, RAmy1C, OsAmy1C, alphaAmy10-C,Amy3D/E*(RAmy3D/E), alpha Amy8, alphaAmy8, AmyII-3, AMY1.4, Amy3E, Amy3D/E*, RAmy3D/E, Amy9, RAmy3E, alphaAmy8-C, AMY3E/AMY1.4, OsAmy3E, OsRamy3E,OsSUT1, OsSUT2,OsWRKY51,OsSPL14, SPL14, IPA1, WFP/IPA1, OsSPL14/WFP/IPA1, OsIPA1,  IPA1/OsSPL14,OsGA2ox6,OsGA2ox8,Amy1A/C*(RAmy1A/C), alpha Amy7, AMY1.1, Amy1A, RAmy1A/C, Amy1A/C*, Amy1, Amy1A_C, OsAmy1A, alphaAmy7-C, RAmy1A, AmyI-1, OsAmyI-1, OsRamy1A,Amy3A/B/C*(RAmy3A/B/C), alpha Amy6, AmyII-5, AMY1.6, Amy1.6, Amy3B, BRAmy3A/B/C, Amy3A/B/C*, Amy6, RAmy3B, alphaAmy6-C, OsRamy3B, OsAmy3C,OsWRKY71, WRKY-71,OsGA2ox9, GA2ox7, 2-ODD35, Os2-ODD35, 2ODD35, Os2ODD35,OsGA2ox3, ga2ox 3, OsGA2ox-3, GA2ox3, GA2ox-3, GA2ox4,GA20OX1, OsGA20ox1, 20ox1, GA20ox-1, ga20ox1, Os20ox, C20OX2, OsGA20ox2, OsGA20ox-1, GA20ox1, OsGNP1,OsGAMYB, GAM1, OsGAMyb, Os-MYBGA, Os GAMYB, OsMYBGA, MYBGA, Os2R_MYB15, 2R_MYB15 ,Amy3D/E*(RAmy3D/E), alpha Amy3, AmyII-4, AMY1.3, Amy3D, Amy3D/E*, RAmy3D/E, Amy3D_E, Amy8, aAmy3, RAmy3D, OsAmy3D, alphaAmy3, OsRamy3D
49989	34184548	Zhong F.T., Liu Y.L., Zheng D., Lu S.	First?report?of?Alternaria?alternata causing?brown leaf?spot?on wild rice (Oryza rufipogon) in China.	Plant Dis.			2021		
49990	34154533	Kumar S., Pallavi, Chugh C., Seem K., Kumar S., Vinod K.K., Mohapatra T.	Characterization of contrasting rice (Oryza sativa L.) genotypes reveals the Pi-efficient schema for phosphate starvation tolerance.	BMC Plant Biol.	21(1)	282	2021		
49991	34205511	Kitony J.K., Sunohara H., Tasaki M., Mori J.I., Shimazu A., Reyes V.P., Yasui H., Yamagata Y., Yoshimura A., Yamasaki M., Nishiuchi S., Doi K.	Development of an <i>Aus</i>-Derived Nested Association Mapping (<i>Aus</i>-NAM) Population in Rice.	Plants (Basel)	10(6)		2021		
49992	34168661	Kumari S., Sharma N., Raghuram N.	Meta-Analysis of Yield-Related and N-Responsive Genes Reveals Chromosomal Hotspots, Key Processes and Candidate Genes for Nitrogen-Use Efficiency in Rice.	Front Plant Sci	12	627955	2021		
49993	34133977	Giaume F., Fornara F.	SPL transcription factors prevent inflorescence reversion in rice.	Mol Plant	14(7)	1041-1043	2021		
49994	34089089	Deepika, Singh A.	Expression dynamics indicate the role of Jasmonic acid biosynthesis pathway in regulating macronutrient (N, P and K+) deficiency tolerance in rice (Oryza sativa L.).	Plant Cell Rep.	40(8)	1495-1512	2021		
49995	34393607	Saighani K., Kondo D., Sano N., Murata K., Yamada T., Kanekatsu M.	Correlation between seed longevity and RNA integrity in the embryos of rice seeds.	Plant Biotechnol (Tokyo)	38(2)	277-283	2021		
49996	34271440	Zheng Y., Li S., Huang J., Fu H., Zhou L., Furusawa Y., Shu Q.	Identification and characterization of inheritable structural variations induced by ion beam radiations in rice.	Mutat. Res.	823	111757	2021		
49997	34168144	Yang C., Liu R., Pang J., Ren B., Zhou H., Wang G., Wang E., Liu J.	Addendum: Poaceae-specific cell wall-derived oligosaccharides activate plant immunity via OsCERK1 during Magnaporthe oryzae infection in rice.	Nat Commun	12(1)	3945	2021		
49998	34193042	Li Y., Cheah B.H., Fang Y.F., Kuang Y.H., Lin S.C., Liao C.T., Huang S.H., Lin Y.F., Chuang W.P.	Transcriptomics identifies key defense mechanisms in rice resistant to both leaf-feeding and phloem feeding herbivores.	BMC Plant Biol.	21(1)	306	2021		
49999	34214659	Zhao H., Li J., Yang L., Qin G., Xia C., Xu X., Su Y., Liu Y., Ming L., Chen L.L., Xiong L., Xie W.	An inferred functional impact map of genetic variants in rice.	Mol Plant			2021		
50000	34103609	Naseer B., Naik H.R., Hussain S.Z., Shikari A.B., Noor N.	Variability in waxy (Wx) allele, in-vitro starch digestibility, glycemic response and textural behaviour of popular Northern Himalayan rice varieties.	Sci Rep	11(1)	12047	2021		
50001	34110541	Higgins J., Santos B., Khanh T.D., Trung K.H., Duong T.D., Doai N.T.P., Khoa N.T., Ha D.T.T., Diep N.T., Dung K.T., Phi C.N., Thuy T.T., Tuan N.T., Tran H.D., Trung N.T., Giang H.T., Nhung T.K., Tran C.D., Lang S.V., Nghia T., Van Giang N., Xuan T.D., Hall A., Dyer S., Ham L.H., Caccamo M., De Vega JJ.	Resequencing of 672 Native Rice Accessions to Explore Genetic Diversity and Trait Associations in Vietnam.	Rice (N Y)	14(1)	52	2021		
50002	33774822	Gao F., Zhang H., Zhang W., Wang N., Zhang S., Chu C., Liu C.	Engineering of the cytosolic form of Phosphoglucose isomerase into chloroplasts improves plant photosynthesis and biomass.	New Phytol.	231(1)	315-325	2021		
50003	33866641	Castanera R., Vendrell-Mir P., Bardil A., Carpentier M.C., Panaud O., Casacuberta J.M.	Amplification dynamics of miniature inverted-repeat transposable elements and their impact on rice trait variability.	Plant J.	107(1)	118-135	2021		
50004	34135921	Kong L., Zhang Y., Du W., Xia H., Fan S., Zhang B.	Signaling Responses to N Starvation: Focusing on Wheat and Filling the Putative Gaps With Findings Obtained in Other Plants. A Review.	Front Plant Sci	12	656696	2021		
50005	34220220	Gupta R., Anshu, Noureldeen A., Darwish H.	Rhizosphere mediated growth enhancement using phosphate solubilizing rhizobacteria and their tri-calcium phosphate solubilization activity under pot culture assays in Rice (<i>Oryza sativa.</i>).	Saudi J Biol Sci	28(7)	3692-3700	2021		
50006	34056673	Wang C., Chen S., Feng A., Su J., Wang W., Feng J., Chen B., Zhang M., Yang J., Zeng L., Zhu X.	Xa7, a Small Orphan Gene Harboring Promoter Trap for AvrXa7, Leads to the Durable Resistance to Xanthomonas oryzae Pv. oryzae.	Rice (N Y)	14(1)	48	2021		
50007	33977637	Sun S., Zhu J., Guo R., Whelan J., Shou H.	DNA methylation is involved in acclimation to iron-deficiency in rice (Oryza sativa).	Plant J.			2021		
50008	34028583	Bansal S., Sardar S., Sinha K., Bhunia R.K., Katoch M., Sonah H., Deshmukh R., Ram H.	Identification and molecular characterization of rice bran-specific lipases.	Plant Cell Rep.	40(7)	1215-1228	2021		
50009	34032943	Yu W.Q., Wang X., Tang Y.C., Yan F.C., Liu W.Z., Zheng G.P., Yin D.M.	Cloning and expression of the esxA gene and the growth-promoting effects of the encoded protein on rice seedlings.	AMB Express	11(1)	72	2021		
50010	34058471	Lin Q.J., Kumar V., Chu J., Li Z.M., Wu X.X., Dong H., Sun Q., Xuan Y.H.	CBL-interacting protein kinase 31 regulates rice resistance to blast disease by modulating cellular potassium levels.	Biochem. Biophys. Res. Commun.	563	23-30	2021		
50011	33957430	Qi H., Zhang A., Du Z., Wu J., Chen X., Zhang X., Zhao Y., Wei Z., Xie X., Li Y., Ye M.	delta-MnO2 changed the structure of humic-like acid during co-composting of chicken manure and rice straw.	Waste Manag	128	16-24	2021		
50012	33973419	Yue E., Tao H., Xu J.	Genome-wide analysis of microRNA156 and its targets, the genes encoding SQUAMOSA promoter-binding protein-like (SPL) transcription factors, in the grass family Poaceae.	J Zhejiang Univ Sci B	22(5)	366-382	2021		
50013	34073486	Wang Z., Liu X., Xie X., Deng L., Zheng H., Pan H., Li D., Li L., Zhong C.	ABE8e with Polycistronic tRNA-gRNA Expression Cassette Sig-Nificantly Improves Adenine Base Editing Efficiency in <i>Nicotiana benthamiana</i>.	Int J Mol Sci	22(11)		2021		
50014	33624763	Wang G., Wu Y., Ma L., Lin Y., Hu Y., Li M., Li W., Ding Y., Chen L.	Phloem loading in rice leaves depends strongly on the apoplastic pathway.	J. Exp. Bot.	72(10)	3723-3738	2021		
50015	33982648	Wang Y., Wang T., Liu L.	The rice VCS1 is identified as a molecular tool to mark and visualize the vegetative cell of pollen.	Plant Signal Behav	16(8)	1924502	2021		
50016	34011154	Hu L., Huang Y., Ding B., Cai R., Bai L.	Selective Action Mechanism of Fenclorim on Rice and <i>Echinochloa crusgalli</i> Is Associated with the Inducibility of Detoxifying Enzyme Activities and Antioxidative Defense.	J. Agric. Food Chem.	69(21)	5830-5839	2021		
50017	34034043	Kabiri S., Rodenburg J., van Ast A., Pflug S., Kool H., Bastiaans L.	Impact of the facultative parasitic weed Rhamphicarpa fistulosa (Hochst.) Benth. on photosynthesis of its host Oryza sativa L.	J. Plant Physiol.	262	153438	2021		
50018	33964159	Park M., Christin P.A., Bennetzen J.L.	Sample sequence analysis uncovers recurrent horizontal transfers of transposable elements among grasses.	Mol. Biol. Evol.			2021		
50019	34027390	Chen X., Liu P., Mei L., He X., Chen L., Liu H., Shen S., Ji Z., Zheng X., Zhang Y., Gao Z., Zeng D., Qian Q., Ma B.	<i>Xa7</i>, a new executor <i>R</i> gene that confers durable and broad-spectrum resistance to bacterial blight disease in rice.	Plant Commun	2(3)	100143	2021		
50020	34011978	Anusha G., Rao D.S., Jaldhani V., Beulah P., Neeraja C.N., Gireesh C., Anantha M.S., Suneetha K., Santhosha R., Prasad A.S.H., Sundaram R.M., Madhav M.S., Fiyaz A., Brajendra P., Tuti M.D., Bhave M.H.V., Krishna K.V.R., Ali J., Subrahmanyam D., Senguttuvel P.	Grain Fe and Zn content, heterosis, combining ability and its association with grain yield in irrigated and aerobic rice.	Sci Rep	11(1)	10579	2021		
50021	34034675	Luo H., Chen Y., He L., Tang X.	Lanthanum (La) improves growth, yield formation and 2-acetyl-1-pyrroline biosynthesis in aromatic rice (Oryza sativa L.).	BMC Plant Biol.	21(1)	233	2021		
50022	34015134	Omukai S., Arimura S.I., Toriyama K., Kazama T.	Disruption of mitochondrial open reading frame 352 partially restores pollen development in cytoplasmic male sterile rice.	Plant Physiol.			2021		
50023	33965567	Guha T., Das H., Mukherjee A., Kundu R.	Elucidating ROS signaling networks and physiological changes involved in nanoscale zero valent iron primed rice seed germination sensu stricto.	Free Radic. Biol. Med.	171	11-25	2021		
50024	34010619	Kajala K., Gouran M., Shaar-Moshe L., Mason G.A., Rodriguez-Medina J., Kawa D., Pauluzzi G., Reynoso M., Canto-Pastor A., Manzano C., Lau V., Artur M.A.S., West D.A., Gray S.B., Borowsky A.T., Moore B.P., Yao A.I., Morimoto K.W., Bajic M., Formentin E., Nirmal N.A., Rodriguez A., Pasha A., Deal R.B., Kliebenstein D.J., Hvidsten T.R., Provart N.J., Sinha N.R., Runcie D.E., Bailey-Serres J., Brady S.M.	Innovation, conservation, and repurposing of gene function in root cell type development.	Cell	184(12)	3333-3348.e19	2021		
50025	33993401	Bakade R., Ingole K.D., Deshpande S., Pal G., Patil S.S., Bhattacharjee S., Prasannakumar M.K., Ramu V.S.	Comparative Transcriptome Analysis of Rice Resistant and Susceptible Genotypes to Xanthomonas oryzae pv. oryzae Identifies Novel Genes to Control Bacterial Leaf Blight.	Mol. Biotechnol.	63(8)	719-731	2021		
50026	33966102	Meng F., He Y., Chen J., Long X., Wang H., Zhu M., Liu S., Cai Q., Zhang Z.	Analysis of natural variation of the rice blast resistance gene Pike and identification of a novel allele Pikg.	Mol. Genet. Genomics	296(4)	939-952	2021		
50027	33836077	Xu Q., Liu Q., Chen Z., Yue Y., Liu Y., Zhao Y., Zhou D.X.	Histone deacetylases control lysine acetylation of ribosomal proteins in rice.	Nucleic Acids Res.	49(8)	4613-4628	2021	_,_,_,_,_,HDAC6,HDA705,HDAC10,CCT36,GSTU1,WRKY27	,,RPS11,,,OsHDAC6, OsHDA706, HDA706,OsHDA705,OsHDAC10, HDA714, OsHDA714, ASDAC, OsASDAC,OsCCT36, OsCMF12, CMF12, OsRpp30, Rpp30,OsGSTU1,OsWRKY27
50028	34074035	Thepbandit W., Papathoti N.K., Daddam J.R., Thumanu K., Siriwong S., Thanh T.L., Buensanteai N.	Identification of Salicylic Acid Mechanism against Leaf Blight Disease in <i>Oryza sativa</i> by SR-FTIR Microspectroscopic and Docking Studies.	Pathogens	10(6)		2021		
50029	33990665	Rahman C.R., Amin R., Shatabda S., Toaha M.S.I.	A convolution based computational approach towards DNA N6-methyladenine site identification and motif extraction in rice genome.	Sci Rep	11(1)	10357	2021		
50030	34023912	Li J., Zhai S., Gao H., Xiao F., Li Y., Wu G., Wu Y.	Development and assessment of a duplex droplet digital PCR method for quantification of GM rice Kemingdao.	Anal Bioanal Chem	413(16)	4341-4351	2021		
50031	34073070	Chun H.J., Baek D., Jin B.J., Cho H.M., Park M.S., Lee S.H., Lim L.H., Cha Y.J., Bae D.W., Kim S.T., Yun D.J., Kim M.C.	Microtubule Dynamics Plays a Vital Role in Plant Adaptation and Tolerance to Salt Stress.	Int J Mol Sci	22(11)		2021		
50032	34120856	Lin Q., Zhu Z., Liu G., Sun C., Lin D., Xue C., Li S., Zhang D., Gao C., Wang Y., Qiu J.L.	Genome editing in plants with MAD7 nuclease.	J Genet Genomics			2021		
50033	34082330	Yan F., Wei H., Ding Y., Li W., Liu Z., Chen L., Tang S., Ding C., Jiang Y., Li G.	Melatonin regulates antioxidant strategy in response to continuous salt stress in rice seedlings.	Plant Physiol. Biochem.	165	239-250	2021		
50034	33971367	Wei Z., Abdelrahman M., Gao Y., Ji Z., Mishra R., Sun H., Sui Y., Wu C., Wang C., Zhao K.	Engineering broad-spectrum resistance to bacterial blight by CRISPR-Cas9-mediated precise homology directed repair in rice.	Mol Plant	14(8)	1215-1218	2021		
50035	34044309	Li L., Jiang B., Wan Y., Li J., Ma Y.	Integrating bioavailability and aging in the criteria derivation of cadmium for the safe production of rice in paddy soils.	Ecotoxicol. Environ. Saf.	219	112356	2021		
50036	34021837	Takatsuka A., Kazama T., Toriyama K.	Cytoplasmic male sterility-Associated Mitochondrial Gene orf312 Derived from Rice (Oryza sativa L.) Cultivar Tadukan.	Rice (N Y)	14(1)	46	2021		
50037	33890699	Wen N., Chen J., Chen G., Du L., Chen H., Li Y., Peng Y., Yang X., Han L.	The overexpression of insect endogenous microRNA in transgenic rice inhibits the pupation of Chilo suppressalis and Cnaphalocrocis medinalis.	Pest Manag. Sci.	77(9)	3990-3999	2021		
50038	33989104	He L., Li M., Chen D., Qian Q., Zeng D., Zhu L.	Rice Ferredoxins localize to chloroplasts/plastids and may function in different tissues.	Plant Signal Behav	16(9)	1926813	2021		
50039	34063649	Adegoke T.V., Wang Y., Chen L., Wang H., Liu W., Liu X., Cheng Y.C., Tong X., Ying J., Zhang J.	Posttranslational Modification of Waxy to Genetically Improve Starch Quality in Rice Grain.	Int J Mol Sci	22(9)		2021		
50040	34068989	Wang P., Li L., Wei H., Sun W., Zhou P., Zhu S., Li D., Zhuge Q.	Genome-Wide and Comprehensive Analysis of the Multiple Stress-Related CAF1 (CCR4-associated factor 1) Family and Its Expression in Poplar.	Plants (Basel)	10(5)		2021		
50041	33975222	Wang Y., Zheng X., He X., L? Q., Qian X., Xiao Q., Lin R.	Effects of Pseudomonas TCd-1 on rice (Oryza sativa) cadmium uptake, rhizosphere soils enzyme activities and cadmium bioavailability under cadmium contamination.	Ecotoxicol. Environ. Saf.	218	112249	2021		
50042	34034628	Fiaz S., Wang X., Khan S.A., Ahmar S., Noor M.A., Riaz A., Ali K., Abbas F., Mora-Poblete F., Figueroa C.R., Alharthi B.	Novel plant breeding techniques to advance nitrogen use efficiency in rice: A review.	GM Crops Food		1-20	2021		
50043	34123596	Wang H., Li T., Li W., Wang W., Zhao H.	Identification and analysis of <i>Chrysanthemum nankingense</i> NAC transcription factors and an expression analysis of OsNAC7 subfamily members.	PeerJ	9	e11505	2021		
50044	34040924	Sahoo R.K., Rani V., Tuteja N.	<i>Azotobacter vinelandii</i> helps to combat chromium stress in rice by maintaining antioxidant machinery.	3 Biotech	11(6)	275	2021		
50045	34045707	Wu T.Y., Goh H., Azodi C.B., Krishnamoorthi S., Liu M.J., Urano D.	Evolutionarily conserved hierarchical gene regulatory networks for plant salt stress response.	Nat Plants	7(6)	787-799	2021		
50046	34014427	Feng Y., Yuan X., Wang Y., Yang Y., Zhang M., Yu H., Xu Q., Wang S., Niu X., Wei X.	Validation of a QTL for grain size and Weight Using an Introgression Line from a Cross between Oryza sativa and Oryza minuta.	Rice (N Y)	14(1)	43	2021		
50047	34021769	Du Z., Huang Z., Li J., Bao J., Tu H., Zeng C., Wu Z., Fu H., Xu J., Zhou D., Zhu C., Fu J., He H.	qTGW12a, a naturally varying QTL, regulates grain weight in rice.	Theor. Appl. Genet.	134(9)	2767-2776	2021	BE2	OsBE2, TGW12a, OsTGW12a
50048	33989431	Fukayama H., Miyagawa F., Shibatani N., Koudou A., Sasayama D., Hatanaka T., Azuma T., Yamauchi Y., Matsuoka D., Morita R.	CO2 -responsive CCT protein interacts with 14-3-3 proteins and controls the expression of starch synthesis-related genes.	Plant Cell Environ.	44(8)	2480-2493	2021	NRR,SBE1,AGPL3,PHO1,GF14B,GPT2,GF14A,AGPS1	OsNRR, NRRa, NRRb, OsCCT18, OsCMF6,  CCT18, CMF6, CRCT, OsCRCT,sbe1, Rbe1. Sbe1, sbe1*(QEI), RBE1, BEI, SBE I, QEI, OsBEI, BE1, OsSBE1, OsSBEI, SBEI,OsAGPL3, APL3, OsAPL3, AGPlar, OsAGPL1, AGPL1,Pho1, OsPho1, OsPHOL, PHOL, OsPHOI, PHOI,GF14b, OsGF14b, 14-3-3b,OsGPT2,GF14a, OsGF14a, WIN2, 14-3-3a,OsAGPS1, APS1, OsAPS1, AGPsma
50049	34159198	Berahim Z., Omar M.H., Zakaria N.I., Ismail M.R., Rosle R., Roslin N.A., Che'Ya NN.	Silicon Improves Yield Performance by Enhancement in Physiological Responses, Crop Imagery, and Leaf and Culm Sheath Morphology in New Rice Line, PadiU Putra.	Biomed Res Int	2021	6679787	2021		
50050	34052903	Shahzad R., Ewas M., Harlina P.W., Khan S.U., Zhenyuan P., Nie X., Nishawy E.	beta-Sitosterol differentially regulates key metabolites for growth improvement and stress tolerance in rice plants during prolonged UV-B stress.	J Genet Eng Biotechnol	19(1)	79	2021		
50051	33974154	Tian D., Chen Z., Lin Y., Liang T., Chen Z., Guo X., Wang F., Wang Z.	The Interaction between Rice Genotype and Magnaporthe oryzae Regulates the Assembly of Rice Root-Associated Microbiota.	Rice (N Y)	14(1)	40	2021		
50052	33772588	Zhang L., Song H., Li B., Wang M., Di D., Lin X., Kronzucker H.J., Shi W., Li G.	Induction of S-nitrosoglutathione reductase protects root growth from ammonium toxicity by regulating potassium homeostasis in Arabidopsis and rice.	J. Exp. Bot.	72(12)	4548-4564	2021		
50053	33768704	Gupta A., Shaw B.P.	Augmenting salt tolerance in rice by regulating uptake and tissue specific accumulation of Na+ - through Ca2+ -induced alteration of biochemical events.	Plant Biol (Stuttg)	23 Suppl 1	122-130	2021		
50054	34021188	Berahim Z., Dorairaj D., Omar M.H., Saud H.M., Ismail M.R.	Spermine mediated improvements on stomatal features, growth, grain filling and yield of rice under differing water availability.	Sci Rep	11(1)	10669	2021		
50055	34027391	Luo D., Huguet-Tapia JC., Raborn R.T., White F.F., Brendel V.P., Yang B.	The <i>Xa7</i> resistance gene guards the rice susceptibility gene <i>SWEET14</i> against exploitation by the bacterial blight pathogen.	Plant Commun	2(3)	100164	2021		
50056	33993496	Yang D., Li S., Xiao Y., Lu L., Zheng Z., Tang D., Cui H.	Transcriptome analysis of rice response to blast fungus identified core genes involved in immunity.	Plant Cell Environ.	44(9)	3103-3121	2021		
50057	34046768	Zhou K., Zhang C., Xia J., Yun P., Wang Y., Ma T., Li Z.	Albino seedling lethality 4; Chloroplast 30S Ribosomal Protein S1 is Required for Chloroplast Ribosome Biogenesis and Early Chloroplast Development in Rice.	Rice (N Y)	14(1)	47	2021	PSBB,RPOB,RBCS,FGL,ASL4,CHLH,RPOA,RBCL,YGL98,FTSZ1,PSBC,YGL1,ELL,RPOTP,PSAB,HEMA,PSBA,CAB2R	psbB, OsPSBB,rpoB, RpoB, Rpobeta,rbcS, OsRbcS, RBCS-C, RbcS2, OsRBCS2, RbcS1, OsRbcS2, OsrbcS1,fgl(fl), fl, fgl, OsFGL, OsPorB, PoPA, PORA, porA, OsPORA, PORB, OsPORB,OsPRPS1, PRPS1, OsASL4,OsChlH, ChlH, OsCHLH,rope, rpoalpha, Rpoalpha, rope, RpoA ,rbcL, rbcA, OsrbcL,OsChlD, ChlD, CHLD, OsCHLD, Ygl7, YGL3, OsvWA12, vWA12,FtsZ1, FtsZ, OsFtsZ1, OsFtsZ,psbC, cp43, OsPSBC, OsCP43,OsYGL1, CHLG, Ygl1, CS, OsCHLG,chlI, OsChlI, ChlI, CHLI, OsCHLI, OsCHLI/ELL, OsELL,OsRpo Tp, OsRpoTp, NEP, RpoTp, rpoTP2,PsaB, psaB, PsAA2, psaA2,HEMA1, OsHEMA, GluTR, OsHEMA1, hemA,PsbA, psbA, OsPsbA, PSBD1, OsPSBD1, psbD1,Oscab2R, CAB-2, OsLhcp, Lhcb1, Lhcb1a, OsLhcb1, OsLhcb1a 
50058	33864463	Akama K., Shimajiri Y., Kainou K., Iwasaki R., Nakao R., Nikawa T., Nishikawa A.	Functional rice with tandemly repeated Cbl-b Ubiquitin ligase inhibitory pentapeptide prevents denervation-induced muscle atrophy in vivo.	Biosci. Biotechnol. Biochem.	85(6)	1415-1421	2021		
50059	34042262	Ren Q., Sretenovic S., Liu G., Zhong Z., Wang J., Huang L., Tang X., Guo Y., Liu L., Wu Y., Zhou J., Zhao Y., Yang H., He Y., Liu S., Yin D., Mayorga R., Zheng X., Zhang T., Qi Y., Zhang Y.	Improved plant cytosine base editors with high editing activity, purity, and specificity.	Plant Biotechnol. J.			2021		
50060	33986411	Yang W., Zhang F., Zafar S., Wang J., Lu H., Naveed S., Lou J., Xu J.	Genetic dissection of heterosis of indica-japonica by introgression line, recombinant inbred line and their testcross populations.	Sci Rep	11(1)	10265	2021		
50061	33942137	Chen C., Travis A.J., Hossain M., Islam M.R., Price A.H., Norton G.J.	Genome-wide association mapping of sodium and potassium concentration in rice grains and shoots under alternate wetting and drying and continuously flooded irrigation.	Theor. Appl. Genet.	134(7)	2315-2334	2021		
50062	33953336	Butt H., Bazin J., Alshareef S., Eid A., Benhamed M., Reddy A.S.N., Crespi M., Mahfouz M.M.	Overlapping roles of spliceosomal components SF3B1 and PHF5A in rice splicing regulation.	Commun Biol	4(1)	529	2021	SRWD5,CRD1,PLT1,PHF5A2,ERF109,BZIP56,DNRL1,ASR4,NAC4,OGR,ORYB,ERF124,WRKY27,SF3B1	OsSRWD5, OsWD40-73,  OsDWD55, DWD55,CRD1/OsHST, OsCRD1, OsHST, HST,OsPLT1, AP2/EREBP#044, AP2/EREBP44, AINTEGUMENTA, OsAINTEGUMENTA,OsPHF5A2,OsERF#109, OsERF109, AP2/EREBP#063, AP2/EREBP63, DLN223, OsDLN223,OsbZIP56, OsFD5,OsDAHP1, DAHP1, DAHPS, OsDAHPS2, DAHPS2, OsDNRL1,Asr4, OsASR6, OsASR2, Asr2, OsASR1, ASR1,OsNAC4, NAC68, ONAC068, OnNAC4*, OnNAC4, OsNAC4/ONAC068,PHF5A1, OsPHF5A1, PHF5A, OsPHF5A, OsOGR,OsRD21, RD21, OsORYB,DERF8, OsDERF8, OsERF#124, OsERF124, AP2/EREBP#158, AP2/EREBP158,OsWRKY27,OsSF3B1, SGR
50063	33947950	Oo A.Z., Tsujimoto Y., Mukai M., Nishigaki T., Takai T., Uga Y.	Synergy between a shallow root system with a Dro1 homologue and localized P application improves P uptake of lowland rice.	Sci Rep	11(1)	9484	2021		
50064	34012461	Li D., Yang J., Yang Y., Liu J., Li H., Li R., Cao C., Shi L., Wu W., He K.	A Timely Review of Cross-Kingdom Regulation of Plant-Derived MicroRNAs.	Front Genet	12	613197	2021		
50065	34042184	Huang L., Wang W., Zhang N., Cai Y., Liang Y., Meng X., Yuan Y., Li J., Wu D., Wang Y.	LAZY2 controls rice tiller angle through regulating starch biosynthesis in gravity-sensing cells.	New Phytol.	231(3)	1073-1087	2021	LA1,LA2 ,WOX11,PPGM,WOX6,IAA20	OsLa1,OsLA2 ,OsWOX11, Os WOX11, OsWOX12A,OspPGM, pPGM ,OsWOX6, Os WOX6, OsWOX12B, WOX12B,OsIAA20
50066	33989439	Nisa M., Bergis C., Pedroza-Garcia JA., Drouin-Wahbi J., Mazubert C., Bergounioux C., Benhamed M., Raynaud C.	The plant DNA polymerase theta is essential for the repair of replication-associated DNA damage.	Plant J.	106(5)	1197-1207	2021		
50067	34065233	Mahmood A., Wang W., Ali I., Zhen F., Osman R., Liu B., Liu L., Zhu Y., Cao W., Tang L.	Individual and Combined Effects of Booting and Flowering High-Temperature Stress on Rice Biomass Accumulation.	Plants (Basel)	10(5)		2021		
50068	33840122	Howell S.H.	Evolution of the unfolded protein response in plants.	Plant Cell Environ.	44(8)	2625-2635	2021		
50069	34004453	Mridha D., Paul I., De A., Ray I., Das A., Joardar M., Chowdhury N.R., Bhadoria P.B.S., Roychowdhury T.	Rice seed (IR64) priming with potassium humate for improvement of seed germination, seedling growth and antioxidant defense system under arsenic stress.	Ecotoxicol. Environ. Saf.	219	112313	2021		
50070	33978847	Yang F., Debatosh D., Song T., Zhang J.H.	Retraction Note: Light Harvesting-like Protein 3 Interacts with Phytoene Synthase and Is Necessary for Carotenoid and Chlorophyll Biosynthesis in Rice.	Rice (N Y)	14(1)	41	2021		
50071	34095311	Ab Halim AAB., Rafii M.Y., Osman M.B., Oladosu Y., Chukwu S.C.	Ageing Effects, Generation Means, and Path Coefficient Analyses on High Kernel Elongation in Mahsuri Mutan and Basmati 370 Rice Populations.	Biomed Res Int	2021	8350136	2021		
50072	34069231	Kwon Y.H., Kabange N.R., Lee J.Y., Lee S.M., Cha J.K., Shin D.J., Cho J.H., Kang J.W., Ko J.M., Lee J.H.	Novel QTL Associated with shoot branching Identified in Doubled Haploid Rice (<i>Oryza sativa</i> L.) under Low Nitrogen Cultivation.	Genes (Basel)	12(5)		2021		
50073	33970916	Hibara K.I., Miya M., Benvenuto S.A., Hibara-Matsuo N., Mimura M., Yoshikawa T., Suzuki M., Kusaba M., Taketa S., Itoh J.I.	Regulation of the plastochron by three many-noded dwarf genes in barley.	PLoS Genet.	17(5)	e1009292	2021	BE2,PLA1,GNAT2,SMG4,GW6A	OsBE2, TGW12a, OsTGW12a,pla1, OsPLA1, plt1, CYP78A11,OsGNAT2, HHC2, OsHHC2,OsBE1, OsSMG4, BE1,OsglHAT1, glHAT1, GW6a, OsGW6a, OsGNAT1, GNAT1
50074	34071051	Luo J., Liu L., Konik-Rose C., Tian L., Singh S., Howitt C.A., Li Z., Liu Q.	Down-Regulation of <i>FAD2-1</i> Gene Expression Alters Lysophospholipid Composition in the Endosperm of Rice Grain and Influences Starch Properties.	Foods	10(6)		2021		
50075	34095576	Das A., Rangappa K., Basavaraj S., Dey U., Haloi M., Layek J., Idapuganti R.G., Lal R., Deshmukh N.A., Yadav G.S., Babu S., Ngachan S.	Conservation tillage and nutrient management practices in summer rice (<i>Oryza sativa</i> L.) favoured root growth and phenotypic plasticity of succeeding winter pea (<i>Pisum sativum</i>L.) under eastern Himalayas, India.	Heliyon	7(5)	e07078	2021		
50076	34071965	Zhang H., Li J., Zhao S., Yan X., Si N., Gao H., Li Y., Zhai S., Xiao F., Wu G., Wu Y.	An Editing-Site-Specific PCR Method for Detection and Quantification of <i>CAO1</i>-Edited Rice.	Foods	10(6)		2021		
50077	33972215	Wang C.L., Zhang Y.D., Zhao C.F., Wei X.D., Yao S., Zhou L.H., Zhu Z., Chen T., Zhao Q.Y., Zhao L., Lu K., Liang W.H.	Inheritance and breeding of japonica rice with good eating quality in Jiangsu province.	Yi Chuan	43(5)	442-458	2021		
50078	34122472	Swamy B.P.M., Marathi B., Ribeiro-Barros AIF., Calayugan M.I.C., Ricachenevsky F.K.	Iron Biofortification in Rice: An Update on Quantitative Trait Loci and Candidate Genes.	Front Plant Sci	12	647341	2021		
50079	34044788	McGowan M.T., Zhang Z., Ficklin S.P.	Chromosomal characteristics of salt stress heritable gene expression in the rice genome.	BMC Genom Data	22(1)	17	2021		
50080	34040107	Teixeira S.B., Pires S.N., ?vila GE., Silva B.E.P., Schmitz V.N., Deuner C., da Silva Armesto R., da Silva Moura D., Deuner S.	Application of vigor indexes to evaluate the cold tolerance in rice seeds germination conditioned in plant extract.	Sci Rep	11(1)	11038	2021		
50081	34014423	Ahmadi N., Ramanantsoanirina A., Santos J.D., Frouin J., Radanielina T.	Evolutionary Processes Involved in the Emergence and Expansion of an Atypical O. sativa Group in Madagascar.	Rice (N Y)	14(1)	44	2021		
50082	34090120	Das P., Manna I., Sil P., Bandyopadhyay M., Biswas A.K.	Silicon augments salt tolerance through modulation of polyamine and GABA metabolism in two indica rice (Oryza sativa L.) cultivars.	Plant Physiol. Biochem.	166	41-52	2021		
50083	33991411	Wu C.Y., Hong C.Y.	An in vivo GA- and ABA-responsive dual-luciferase reporter system for simultaneous detection of GA and ABA responses, hormone crosstalk and heat stress response in rice.	Plant Biotechnol. J.	19(8)	1486-1488	2021		
50084	33975546	Fan X., Liu L., Qian K., Chen J., Zhang Y., Xie P., Xu M., Hu Z., Yan W., Wu Y., Xu G., Fan X.	Plant DNA methylation is sensitive to parent seed N content and influences the growth of rice.	BMC Plant Biol.	21(1)	211	2021		
50085	34051138	Qin P., Lu H., Du H., Wang H., Chen W., Chen Z., He Q., Ou S., Zhang H., Li X., Li X., Li Y., Liao Y., Gao Q., Tu B., Yuan H., Ma B., Wang Y., Qian Y., Fan S., Li W., Wang J., He M., Yin J., Li T., Jiang N., Chen X., Liang C., Li S.	Pan-genome analysis of 33 genetically diverse rice accessions reveals hidden genomic variations.	Cell	184(13)	3542-3558.e16	2021		
50086	33742839	Zhang S.N., Huang Y.Z., Li Y., Bao Q.L., Huang Y.C.	[Effects of Different Exogenous Plant Hormones on the Antioxidant System and Cd Absorption and Accumulation of Rice Seedlings Under Cd Stress].	Huan Jing Ke Xue	42(4)	2040-2046	2021		
50087	33871605	Sakai T., Abe A., Shimizu M., Terauchi R.	RIL-StEp: epistasis analysis of rice recombinant inbred lines (RILs) reveals candidate interacting genes that control seed hull color and leaf chlorophyll content.	G3 (Bethesda)			2021		
50088	33915963	Han C.M., Shin J.H., Kwon J.B., Kim J.S., Won J.G., Kim J.S.	Comparison of Morphological and Physicochemical Properties of a Floury Rice Variety upon Pre-Harvest Sprouting.	Foods	10(4)		2021		
50089	33686435	Alomrani S., Kunert K.J., Foyer C.H.	Papain-like cysteine proteases are required for the regulation of photosynthetic gene expression and acclimation to high light stress.	J. Exp. Bot.	72(9)	3441-3454	2021		
50090	33859403	Jin S., Lin Q., Luo Y., Zhu Z., Liu G., Li Y., Chen K., Qiu J.L., Gao C.	Genome-wide specificity of prime editors in plants.	Nat. Biotechnol.			2021		
50091	33930508	Wang Q., Su Q., Nian J., Zhang J., Guo M., Dong G., Hu J., Wang R., Wei C., Li G., Wang W., Guo H.S., Lin S., Qian W., Xie X., Qian Q., Chen F., Zuo J.	The Ghd7 transcription factor represses ARE1 expression to enhance nitrogen utilization and grain yield in rice.	Mol Plant	14(6)	1012-1023	2021		
50092	33862343	Chen Z.J., Qiao Y.X., Zhang N., Liu J., Yang H.	Insight into metabolism pathways of pesticide fomesafen in rice: Reducing cropping and environmental risks.	Environ. Pollut.	283	117128	2021		
50093	33891273	Mohiddin F.A., Majid R., Bhat A.H., Dar M.S., Shikari A.B., Sofi N.R., Nabi S.U., Hamid A., Ahanger M.A., Bhat F.A., Hussain A., Bhat N.A.	Molecular phylogeny, pathogenic variability and phytohormone production of Fusarium species associated with bakanae disease of rice in temperate agro-ecosystems.	Mol. Biol. Rep.	48(4)	3173-3184	2021		
50094	33882825	Singh S., Kudapa H., Garg V., Varshney R.K.	Comprehensive analysis and identification of drought-responsive candidate NAC genes in three semi-arid tropics (SAT) legume crops.	BMC Genomics	22(1)	289	2021		
50095	33923150	Tnani H., Chebotarov D., Thapa R., Ignacio J.C.I., Israel W.K., Quilloy F.A., Dixit S., Septiningsih E.M., Kretzschmar T.	Enriched-GWAS and Transcriptome Analysis to Refine and Characterize a Major QTL for Anaerobic Germination Tolerance in Rice.	Int J Mol Sci	22(9)		2021		
50096	33891171	Ni Z., Cao Y., Jin X., Fu Z., Li J., Mo X., He Y., Tang J., Huang S.	Engineering Resistance to Bacterial Blight and Bacterial Leaf Streak in Rice.	Rice (N Y)	14(1)	38	2021		
50097	33911118	Poli Y., Nallamothu V., Hao A., Goud M.D., Wang X., Desiraju S., Mangrauthia S.K., Jain A.	NH787 EMS mutant of rice variety Nagina22 exhibits higher phosphate use efficiency.	Sci Rep	11(1)	9156	2021		
50098	33921954	Ali J., Nicolas K.L.C., Akther S., Torabi A., Ebadi A.A., Marfori-Nazarea CM., Mahender A.	Improved Anther Culture Media for Enhanced Callus Formation and Plant Regeneration in Rice (<i>Oryza sativa</i> L.).	Plants (Basel)	10(5)		2021		
50099	33871646	Pan T., Wang Y., Jing R., Wang Y., Wei Z., Zhang B., Lei C., Qi Y., Wang F., Bao X., Yan M., Zhang Y., Zhang P., Yu M., Wan G., Chen Y., Yang W., Zhu J., Zhu Y., Zhu S., Cheng Z., Zhang X., Jiang L., Ren Y., Wan J.	Post-Golgi Trafficking of Rice Storage Proteins Requires the Small GTPase Rab7 Activation Complex MON1-CCZ1.	Plant Physiol.			2021	MON1	OsMON1
50100	33877001	Waseem M., Huang F., Wang Q., Aslam M.M., Abbas F., Ahmad F., Ashraf U., Hassan W., Fiaz S., Ye X., Yu L., Ke Y.	Identification, methylation profiling, and expression analysis of stress-responsive cytochrome P450 genes in rice under abiotic and phytohormones stresses.	GM Crops Food		1-13	2021		
50101	33821294	Dutta M., Moin M., Saha A., Dutta D., Bakshi A., Kirti P.B.	Gain-of-function mutagenesis through activation tagging identifies XPB2 and SEN1 helicase genes as potential targets for drought stress tolerance in rice.	Theor. Appl. Genet.	134(7)	2253-2272	2021		
50102	34327321	Feng J.W., Lu Y., Shao L., Zhang J., Li H., Chen L.L.	Phasing analysis of the transcriptome and epigenome in a rice hybrid reveals the inheritance and difference in DNA methylation and allelic transcription regulation.	Plant Commun	2(4)	100185	2021		
50103	34092952	Salavati J., Fallah H., Niknejad Y., Barari Tari D.	Methyl jasmonate ameliorates lead toxicity in <i>Oryza sativa</i> by modulating chlorophyll metabolism, antioxidative capacity and metal translocation.	Physiol Mol Biol Plants	27(5)	1089-1104	2021		
50104	33793935	Patel P., Mathioni S.M., Hammond R., Harkess A.E., Kakrana A., Arikit S., Dusia A., Meyers B.C.	Reproductive phasiRNA loci and DICER-LIKE5, but not microRNA loci, diversified in monocotyledonous plants.	Plant Physiol.	185(4)	1764-1782	2021		
50105	33792792	Yang W., Liang J., Hao Q., Luan X., Tan Q., Lin S., Zhu H., Liu G., Liu Z., Bu S., Wang S., Zhang G.	Fine mapping of two grain chalkiness QTLs sensitive to high temperature in rice.	Rice (N Y)	14(1)	33	2021		
50106	33922737	Yuan Z., Long W., Hu H., Liang T., Luo X., Hu Z., Zhu R., Wu X.	Genome-Wide Identification and Expansion Patterns of SULTR Gene Family in Gramineae Crops and Their Expression Profiles under Abiotic Stress in <i>Oryza sativa</i>.	Genes (Basel)	12(5)		2021		
50107	33820934	Peng J., Feng Y., Wang X., Li J., Xu G., Phonenasay S., Luo Q., Han Z., Lu W.	Effects of nitrogen application rate on the photosynthetic pigment, leaf fluorescence characteristics, and yield of indica hybrid rice and their interrelations.	Sci Rep	11(1)	7485	2021		
50108	33846336	Yang C., Liu R., Pang J., Ren B., Zhou H., Wang G., Wang E., Liu J.	Poaceae-specific cell wall-derived oligosaccharides activate plant immunity via OsCERK1 during Magnaporthe oryzae infection in rice.	Nat Commun	12(1)	2178	2021		
50109	33920582	Jin Z., Seo J., Kim B., Lee S.Y., Koh H.J.	Identification of a Candidate Gene for the Novel Cytoplasmic male sterility Derived from Inter-Subspecific Crosses in Rice (<i>Oryza sativa</i> L.).	Genes (Basel)	12(4)		2021		
50110	33903626	Senthil-Nathan S.	Effects of elevated CO2 on resistant and susceptible rice cultivar and its primary host, brown planthopper (BPH), Nilaparvata lugens (St?l).	Sci Rep	11(1)	8905	2021		
50111	33923067	Lim H., Hwang H., Kim T., Kim S., Chung H., Lee D., Kim S., Park S., Cho W., Ji H., Lee G.	Transcriptomic Analysis of Rice Plants Overexpressing <i>PsGAPDH</i> in Response to Salinity Stress.	Genes (Basel)	12(5)		2021		
50112	33921675	Kaewcheenchai R., Vejchasarn P., Hanada K., Shirai K., Jantasuriyarat C., Juntawong P.	Genome-Wide Association Study of Local Thai Indica Rice Seedlings Exposed to Excessive Iron.	Plants (Basel)	10(4)		2021		
50113	33839259	Wei M.Y., Liu J.Y., Li H., Hu W.J., Shen Z.J., Qiao F., Zhu C.Q., Chen J., Liu X., Zheng H.L.	Proteomic analysis reveals the protective role of exogenous hydrogen sulfide against salt stress in rice seedlings.	Nitric Oxide	111-112	14-30	2021		
50114	34377075	Yoneya Y., Wakabayashi T., Kato K.	The <i>temperature sensitive hybrid breakdown 1</i> induces low temperature-dependent intrasubspecific hybrid breakdown in rice.	Breed. Sci.	71(2)	268-276	2021		
50115	33836084	Wang F., Yoshida H., Matsuoka M.	Making the "Green Revolution" Truly Green: improving crop nitrogen use efficiency.	Plant Cell Physiol.			2021		
50116	33907187	Song T., Zhang Y., Zhang Q., Zhang X., Shen D., Yu J., Yu M., Pan X., Cao H., Yong M., Qi Z., Du Y., Zhang R., Yin X., Qiao J., Liu Y., Liu W., Sun W., Zhang Z., Wang Y., Dou D., Ma Z., Liu Y.	The N-terminus of an Ustilaginoidea virens Ser-Thr-rich glycosylphosphatidylinositol-anchored protein elicits plant immunity as a MAMP.	Nat Commun	12(1)	2451	2021		
50117	33899685	Huang L.J., Luo J., Wang Y., Li N.	From Green Revolution to Green Balance: The Nitrogen and Gibberellin Mediated Rice Tiller Growth.	Plant Signal Behav	16(7)	1917838	2021		
50118	33915441	Bidi H., Fallah H., Niknejad Y., Barari Tari D.	Iron oxide nanoparticles alleviate arsenic phytotoxicity in rice by improving iron uptake, oxidative stress tolerance and diminishing arsenic accumulation.	Plant Physiol. Biochem.	163	348-357	2021		
50119	33909432	Wen L., Zhong J., Cui Y., Duan Z., Zhou F., Li C., Ma W., Yin C., Chen H., Lin Y.	Coexpression of <i>I. variabilis-EPSPS</i>* and <i>WBceGO-B3S1</i> Genes Contributes to High Glyphosate Tolerance and Low Glyphosate Residues in Transgenic Rice.	J. Agric. Food Chem.	69(26)	7388-7398	2021		
50120	33745135	Qu Y., Sakoda K., Fukayama H., Kondo E., Suzuki Y., Makino A., Terashima I., Yamori W.	Overexpression of both Rubisco and Rubisco activase rescues rice photosynthesis and biomass under heat stress.	Plant Cell Environ.	44(7)	2308-2320	2021		
50121	33894749	Yu K., Liu Z., Gui H., Geng L., Wei J., Liang D., Lv J., Xu J., Chen X.	Highly efficient generation of bacterial leaf blight-resistant and transgene-free rice using a genome editing and multiplexed selection system.	BMC Plant Biol.	21(1)	197	2021		
50122	33742838	Chen J., Wang J., Wang Y.W., Yao Q.X., Su D.C.	[Influencing Factors of Cadmium Bioaccumulation Factor in Crops].	Huan Jing Ke Xue	42(4)	2031-2039	2021		
50123	33915499	Liu S., Liu N., Lu H., Zhu L.	Disturbed phospholipid metabolism by three polycyclic aromatic hydrocarbons in Oryza sativa.	Environ. Pollut.	283	117073	2021		
50124	34429697	Ida T., Crofts N., Miura S., Matsushima R., Fujita N.	Structure and Properties of Starch in Rice Double Mutants Lacking starch synthase (SS) IIa and Starch Branching Enzyme (BE) IIb.	J Appl Glycosci (1999)	68(2)	31-39	2021		
50125	33933648	Wang L., Ming L., Liao K., Xia C., Sun S., Chang Y., Wang H., Fu D., Xu C., Wang Z., Li X., Xie W., Ouyang Y., Zhang Q., Li X., Zhang Q., Xiao J., Zhang Q.	Bract suppression regulated by the miR156/529-SPLs-NL1-PLA1 module is required for the transition from vegetative to reproductive branching in rice.	Mol Plant	14(7)	1168-1184	2021	FC1,OSH6,LAX1,RFL,SH5,WFP,SPL17,PLA1,IAA6,NL1,PLA2,KAN4,BOP1	fc1, OsTB1, tb1, OsTB1/FC1, Os TB1, TB1, OsFC1, MP3, OsMP3,OsH6, HOS16,lax, lax(lx), lx, OsbHLH123, bHLH123, OsLAX1, BOS1, OsBOS1,RFL, OSL, FL, APO2, APO2/RFL, SSC, SSC/RFL/APO2, OsRFL, OsFL, OsAPO2, OsSSC,OsSH5, RI, SH5/RI, OsRI, VPB1, OsVPB1,OsSPL14, SPL14, IPA1, WFP/IPA1, OsSPL14/WFP/IPA1, OsIPA1,  IPA1/OsSPL14,OsSPL17,pla1, OsPLA1, plt1, CYP78A11,OsIAA6,nl1, OsGATA15, GATA15, OsNL1,pla2, pla2(pla2-1, pla2-2), plt2, LHD2, OsLHD2,OsKAN4,OsNPR5, NPR5, NH4, OsNH4, OsBOP1,  OsBTBA3, BTBA3
50126	33917499	Ignacio J.C.I., Zaidem M., Casal C., Dixit S., Kretzschmar T., Samaniego J.M., Mendioro M.S., Weigel D., Septiningsih E.M.	Genetic Mapping by Sequencing More Precisely Detects Loci Responsible for Anaerobic Germination Tolerance in Rice.	Plants (Basel)	10(4)		2021		
50127	33914519	Zhu J., Zhang C.Q., Xu J., Gilbert R.G., Liu Q.	Identification of Structure-Controlling Rice Biosynthesis Enzymes.	Biomacromolecules	22(5)	2148-2159	2021		
50128	33950408	Khan I., Khan S., Zhang Y., Zhou J., Akhoundian M., Jan S.A.	CRISPR-Cas technology based genome editing for modification of salinity stress tolerance responses in rice (Oryza sativa L.).	Mol. Biol. Rep.	48(4)	3605-3615	2021		
50129	34034867	Song J.M., Arif M., Zi Y., Sze S.H., Zhang M., Zhang H.B.	Molecular and genetic dissection of the USDA rice mini-core collection using high-density SNP markers.	Plant Sci.	308	110910	2021		
50130	33487217	Bai L.W., Liu J., Dai L.F., Deng Q.W., Chen Y.L., Xie J.K., Luo X.D.	Identification and characterisation of cold stress-related proteins in Oryza rufipogon at the seedling stage using label-free quantitative proteomic analysis.	Funct. Plant Biol.	48(5)	542-555	2021		
50131	34377062	Msami J.A., Kawaguchi Y., Ichitani K., Taura S.	Linkage analysis of rice bacterial blight resistance gene <i>xa20</i> in XM6, a mutant line from IR24.	Breed. Sci.	71(2)	144-154	2021		
50132	33924430	Saini A., Rohila J.S., Govindan G., Li Y.F., Sunkar R.	Splice Variants of Superoxide Dismutases in Rice and Their Expression Profiles under Abiotic Stresses.	Int J Mol Sci	22(8)		2021		
50133	33838458	Riaz M., Kamran M., El-Esawi MA., Hussain S., Wang X.	Boron-toxicity induced changes in cell wall components, boron forms, and antioxidant defense system in rice seedlings.	Ecotoxicol. Environ. Saf.	216	112192	2021		
50134	33930509	Hao J., Wang D., Wu Y., Huang K., Duan P., Li N., Xu R., Zeng D., Dong G., Zhang B., Zhang L., Inz? D., Qian Q., Li Y.	The GW2-WG1-OsbZIP47 pathway controls grain size and weight in rice.	Mol Plant	14(8)	1266-1280	2021		
50135	33826753	Basu S., Kumari S., Kumar A., Shahid R., Kumar S., Kumar G.	Nitro-oxidative stress induces the formation of roots' cortical aerenchyma in rice under osmotic stress.	Physiol Plant	172(2)	963-975	2021		
50136	34354442	Almutairi M.M.	Analysis of chromosomes and nucleotides in rice to predict gene expression through codon usage pattern.	Saudi J Biol Sci	28(8)	4569-4574	2021		
50137	33905099	Chen F., Yan B., Gong X., Li H., He Z.	Genome sequencing of the bacterial blight pathogen DY89031 reveals its diverse virulence and origins of Xanthomonas oryzae pv. oryzae strains.	Sci China Life Sci			2021		
50138	33866759	Hata E.M., Yusof M.T., Zulperi D.	Induction of Systemic Resistance against Bacterial Leaf Streak Disease and Growth Promotion in Rice Plant by Streptomyces shenzhenesis TKSC3 and Streptomyces sp. SS8.	Plant Pathol. J.	37(2)	173-181	2021		
50139	33905541	Basu S., Roychoudhury A.	Transcript profiling of stress-responsive genes and metabolic changes during salinity in indica and japonica rice exhibit distinct varietal difference.	Physiol Plant			2021		
50140	33811539	Samal P., Molla K.A., Bal A., Ray S., Swain H., Khandual A., Sahoo P., Behera M., Jaiswal S., Iquebal A., Chakraborti M., Behera L., Kar M.K., Mukherjee A.K.	Comparative transcriptome profiling reveals the basis of differential sheath blight disease response in tolerant and susceptible rice genotypes.	Protoplasma			2021		
50141	33971466	Ma N.L., Lam S.D., Che Lah WA., Ahmad A., Rinklebe J., Sonne C., Peng W.	Integration of environmental metabolomics and physiological approach for evaluation of saline pollution to rice plant.	Environ. Pollut.	286	117214	2021		
50142	33946959	Lee K., Choi G.H., Back K.	Inhibition of Rice Serotonin <i>N</i>-Acetyltransferases by MG149 Decreased Melatonin Synthesis in Rice Seedlings.	Biomolecules	11(5)		2021		
50143	33902286	Xie J., Liu S., Dong R., Xie J., Chen Y., Peng G., Liao W., Xue P., Feng L., Yu Q.	Bound Polyphenols from Insoluble Dietary Fiber of Defatted Rice Bran by Solid-State Fermentation with <i>Trichoderma viride</i>: Profile, Activity, and Release Mechanism.	J. Agric. Food Chem.	69(17)	5026-5039	2021		
50144	33825949	Addison C.K., Angira B., Cerioli T., Groth D.E., Richards J.K., Linscombe S.D., Famoso A.N.	Identification and mapping of a novel resistance gene to the rice pathogen, Cercospora janseana.	Theor. Appl. Genet.	134(7)	2221-2234	2021		
50145	33921910	Kim M.S., Yang J.Y., Yu J.K., Lee Y., Park Y.J., Kang K.K., Cho Y.G.	Breeding of High Cooking and Eating Quality in Rice by Marker-Assisted Backcrossing (MABc) Using KASP Markers.	Plants (Basel)	10(4)		2021		
50146	33922112	Reyes V.P., Angeles-Shim RB., Mendioro M.S., Manuel M.C.C., Lapis R.S., Shim J., Sunohara H., Nishiuchi S., Kikuta M., Makihara D., Jena K.K., Ashikari M., Doi K.	Marker-Assisted Introgression and Stacking of Major QTLs Controlling Grain Number (<i>Gn1a</i>) and Number of Primary Branching (<i>WFP</i>) to NERICA Cultivars.	Plants (Basel)	10(5)		2021		
50147	33847838	Liang P., Wang H., Zhang Q., Zhou K., Li M., Li R., Xiang S., Zhang T., Ling Y., Yang Z., He G., Zhao F.	Identification and Pyramiding of QTLs for Rice grain size Based on Short-Wide Grain CSSL-Z563 and Fine-Mapping of qGL3-2.	Rice (N Y)	14(1)	35	2021		
50148	33845315	Liu T., Malkmes M.J., Zhu L., Huang H., Jiang L.	Metal-organic frameworks coupling simultaneous saccharication and fermentation for enhanced butyric acid production from rice straw under visible light by Clostridium tyrobutyricum CtDeltaack::cat1.	Bioresour. Technol.	332	125117	2021		
50149	33917162	Selamat N., Nadarajah K.K.	Meta-Analysis of Quantitative Traits Loci (QTL) Identified in Drought Response in Rice (<i>Oryza sativa</i> L.).	Plants (Basel)	10(4)		2021		
50150	33830376	Jiang N., Fu J., Zeng Q., Liang Y., Shi Y., Li Z., Xiao Y., He Z., Wu Y., Long Y., Wang K., Yang Y., Liu X., Peng J.	Genome-wide association mapping for resistance to bacterial blight and bacterial leaf streak in rice.	Planta	253(5)	94	2021		
50151	34354389	El-Mowafi HF., AlKahtani M.D.F., El-Hity MA., Reda A.M., Husnain L.A., El-Degwy ES., Abdallah R.M., AlGwaiz H.I.M., Hadifa A.A., Attia K.A.	Characterization of fertility alteration and marker validation for male sterility genes in novel PTGMS lines hybrid rice.	Saudi J Biol Sci	28(8)	4109-4116	2021		
50152	33742836	Dai Z.W., Fang C., Sun B., Wei Z.M., Hu F., Li H.X., Xu L.	[Cadmium Accumulation Characteristics and Impacting Factors of Different Rice Varieties Under Paddy Soils with High Geological Backgrounds].	Huan Jing Ke Xue	42(4)	2016-2023	2021		
50153	33925978	Lee S., Masclaux-Daubresse C.	Current Understanding of leaf senescence in Rice.	Int J Mol Sci	22(9)		2021		
50154	33919454	Xu J., Zhong J., Zhang B., Li X.	Green Labelled Rice Shows a Higher Nutritional and Physiochemical Quality Than Conventional Rice in China.	Foods	10(5)		2021		
50155	33899419	Wu L.L., Tian C., Zhang L., Huang J., Zhu L.F., Zhang J.H., Cao X.C., Jin Q.Y.	[Research advance in the roles of water-nitrogen-oxygen factors in mediating rice growth, photosynthesis and nitrogen utilization in paddy soils.]	Ying Yong Sheng Tai Xue Bao	32(4)	1498-1508	2021		
50156	33822224	Balcerowicz M.	Filling the grain: transcription factor OsNF-YB1 triggers auxin biosynthesis to boost rice grain size.	Plant Physiol.	185(3)	757-758	2021		
50157	33919738	Pan T., Zhang J., He L., Hafeez A., Ning C., Cai K.	Silicon Enhances Plant Resistance of Rice against Submergence Stress.	Plants (Basel)	10(4)		2021		
50158	33930628	Yan F., Zhang J., Li W., Ding Y., Zhong Q., Xu X., Wei H., Li G.	Exogenous melatonin alleviates salt stress by improving leaf photosynthesis in rice seedlings.	Plant Physiol. Biochem.	163	367-375	2021		
50159	33920962	Sims K., Abedi-Samakush F., Szulc N., Macias Honti MG., Mattsson J.	<i>OsARF11</i> Promotes Growth, Meristem, Seed, and Vein Formation during Rice Plant Development.	Int J Mol Sci	22(8)		2021		
50160	33892465	Dai S., Chen Q., Jiang M., Wang B., Xie Z., Yu N., Zhou Y., Li S., Wang L., Hua Y., Tian B.	Colonized extremophile Deinococcus radiodurans alleviates toxicity of cadmium and lead by suppressing heavy metal accumulation and improving antioxidant system in rice.	Environ. Pollut.	284	117127	2021		
50161	33896377	Wang L., Wu S., Jin J., Li R.	Identification of herbivore-elicited long non-coding RNAs in rice.	Plant Signal Behav	16(7)	1916702	2021		
50162	33856565	Khan I., Khan S., Zhang Y., Zhou J.	Genome-wide analysis and functional characterization of the Dof transcription factor family in rice (Oryza sativa L.).	Planta	253(5)	101	2021		
50163	33995465	Shibasaki K., Takebayashi A., Makita N., Kojima M., Takebayashi Y., Kawai M., Hachiya T., Sakakibara H.	Nitrogen Nutrition Promotes Rhizome Bud Outgrowth via Regulation of Cytokinin Biosynthesis Genes and an <i>Oryza longistaminata</i> Ortholog of <i>FINE CULM 1</i>.	Front Plant Sci	12	670101	2021		
50164	33847449	Huang X., Su F., Huang S., Mei F., Niu X., Ma C., Zhang H., Zhu X., Zhu J.K., Zhang J.	Novel Wx alleles generated by base editing for improvement of rice grain quality.	J Integr Plant Biol			2021		
50165	33706696	Wang W., Du J., Chen L., Zeng Y., Tan X., Shi Q., Pan X., Wu Z., Zeng Y.	Transcriptomic, proteomic, and physiological comparative analyses of flooding mitigation of the damage induced by low-temperature stress in direct seeded early indica rice at the seedling stage.	BMC Genomics	22(1)	176	2021		
50166	33715176	Xu J., Misra G., Sreenivasulu N., Henry A.	What happens at night? Physiological mechanisms related to maintaining grain yield under high night temperature in rice.	Plant Cell Environ.	44(7)	2245-2261	2021		
50167	33647072	De la Concepcion JC., Maidment J.H.R., Longya A., Xiao G., Franceschetti M., Banfield M.J.	The allelic rice immune receptor Pikh confers extended resistance to strains of the blast fungus through a single polymorphism in the effector binding interface.	PLoS Pathog.	17(3)	e1009368	2021		
50168	33725573	Mahesh S., Bethoju K., Nalli A., Frank K., Siddiqi I.	Functional analysis of a conserved domain in SWITCH1 reveals a role in commitment to female meiocyte differentiation in Arabidopsis.	Biochem. Biophys. Res. Commun.	551	121-126	2021		
50169	33677700	Vinarao R., Proud C., Zhang X., Snell P., Fukai S., Mitchell J.	Stable and Novel Quantitative Trait Loci (QTL) Confer Narrow Root Cone Angle in an Aerobic Rice (Oryza sativa L.) Production System.	Rice (N Y)	14(1)	28	2021		
50170	33799776	Wu B., Chen Z., Xu X., Chen R., Wang S., Xu H., Lin F.	Harnessing a Transient Gene Expression System in <i>Nicotiana benthamiana</i> to Explore Plant Agrochemical Transporters.	Plants (Basel)	10(3)		2021		
50171	33769192	Xia S., Ruan B., Rao Y., Cui Y., Zhang Q., Zeng D., Qian Q., Ren D.	The <i>ELL1</i> mutation disrupts tryptophan metabolism and induces cell death.	Plant Signal Behav	16(6)	1905336	2021		
50172	33763616	Abebrese S.O., Amoah N.K.A., Dartey P.K.A., Bimpong I.K., Akromah R., Gracen V.E., Offei S.K., Danquah E.Y.	Mapping chromosomal regions associated with anther indehiscence with exerted stigmas in CRI-48 and Jasmine 85 cross of rice (<i>Oryza sativa</i> L).	Heliyon	7(3)	e06483	2021		
50173	33734397	Wang T., Li Y., Song S., Qiu M., Zhang L., Li C., Dong H., Li L., Wang J., Li L.	Embryo Sac Development 1 affects seed setting rate in rice by controlling embryo sac development.	Plant Physiol.			2021	ESD1,APC6	OsOFP31, OsOFP26, OFP31, OFP26, OsSTA245, Os ESD1,OsAPC6
50174	33714137	Huang S., Rao G., Ashraf U., Deng Q., Dong H., Zhang H., Mo Z., Pan S., Tang X.	Ultrasonic seed treatment improved morpho-physiological and yield traits and reduced grain Cd concentrations in rice.	Ecotoxicol. Environ. Saf.	214	112119	2021		
50175	33751571	Basu S., Kumari S., Kumar P., Kumar G., Rajwanshi R.	Redox imbalance impedes photosynthetic activity in rice by disrupting cellular membrane integrity and induces programmed cell death under submergence.	Physiol Plant	172(3)	1764-1778	2021		
50176	33779262	Shi J., Zhou X.S., Yan Z., Tabien R.E., Wilson L.T., Wang L.	Hybrid Rice Outperforms Inbred Rice in Resistance to Sheath Blight and Narrow Brown Leaf Spot.	Plant Dis.			2021		
50177	33761771	Zeng Y., Dong J., Ji Z., Liang Y., Yang C.	A linear regression model for the prediction of rice sheath blight field resistance.	Plant Dis.			2021		
50178	33772600	Teixeira L.S., Pimenta T.M., Brito F.A.L., Malheiros R.S.P., Arruda R.S., Ara?jo WL., Ribeiro D.M.	Selenium uptake and grain nutritional quality are affected by nitrogen fertilization in rice (Oryza sativa L.).	Plant Cell Rep.	40(5)	871-880	2021		
50179	33765592	Banerjee A., Roychoudhury A.	Maghemite nano-fertilization promotes fluoride tolerance in rice by restoring grain yield and modulating the ionome and physiome.	Ecotoxicol. Environ. Saf.	215	112055	2021		
50180	34177328	Taoka K.I., Shimatani Z., Yamaguchi K., Ogawa M., Saitoh H., Ikeda Y., Akashi H., Terada R., Kawasaki T., Tsuji H.	Novel assays to monitor gene expression and protein-protein interactions in rice using the bioluminescent protein, NanoLuc.	Plant Biotechnol (Tokyo)	38(1)	89-99	2021		
50181	33677774	Divya D., Sahu N., Reddy P.S., Nair S., Bentur J.S.	RNA-Sequencing Reveals Differentially Expressed Rice Genes Functionally Associated with Defense against BPH and WBPH in RILs Derived from a Cross between RP2068 and TN1.	Rice (N Y)	14(1)	27	2021		
50182	33606283	Chen K., Du K., Shi Y., Yin L., Shen W.H., Yu Y., Liu B., Dong A.	H3K36 methyltransferase SDG708 enhances drought tolerance by promoting abscisic acid biosynthesis in rice.	New Phytol.	230(5)	1967-1984	2021		
50183	33666740	Liu X., Luo J., Li T., Yang H., Wang P., Su L., Zheng Y., Bao C., Zhou C.	SDG711 Is Involved in Rice Seed Development through Regulation of Starch Metabolism Gene Expression in Coordination with Other Histone Modifications.	Rice (N Y)	14(1)	25	2021	CLF,AGPL1,SSIIC,SBE1,BMY4,AMY5A,WX1,FLO5,BAMY2,SSI,AMY1C,AGPS2,PUL,BMY2,AGPL2,ALK,PHS8,BMY7,AMY3E,BAMY1,SBE3,AMY3B,ISA2,SSIVA	OsSET24, SDG711, EZ1, OsCLF, OsSDG711,OsAGPL1, OsAPL1, APL1, OsAGPL3, AGPL3, OsAGPSL3, AGPSL3,OsSSIIc, SSII-1, SSII1 ,sbe1, Rbe1. Sbe1, sbe1*(QEI), RBE1, BEI, SBE I, QEI, OsBEI, BE1, OsSBE1, OsSBEI, SBEI,OsBmy4, Bmy4,OsAmy5A, Amy5A,wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx,OsSSIIIa, SSIII-2, OsSSIII-2, OsSS3A, SS3A, SS3a, OsSSSIIIa, SSIIIa, Flo5,OsBamy2, Bamy2, OsBmy3, Bmy3, OsBMY4, BMY4,OsSSI, SSS 1, SSS1, SS1, OsSS1, SSSI, OsSSSI,Amy1A/C*(RAmy1A/C), alpha Amy10, Amy1C, RAmy1A/C, Amy1A/C*, Amy3, RAmy1C, OsAmy1C, alphaAmy10-C,OsAGPS2a, AGPS2A, AGPS2B, OsAGPS2, osagps2, APS2, APS2a, APS2b, AGPS2a, APGS2b, OsAGPS2b, AGPP, GAS8, OsAPS2, OsAPS2a, OsAPS2b,OsPUL, SDBE, OsPUL3, RE,OsBMY2, OsBmy6, Bmy6,OsAGPL2, osagpl2, APL2, OsAPL2, AGPiso, sh2, Sh2, GIF2, GAS1 ,alk, SSII-3, OsSSIIa, OsSSII-3, SSIIa, SSS2A, OsSSIIaChr6, SS2a,ISA1, OsISA1, ISA, OsISA, PHS8/ISA1, OsPHS8, ISA I, OsISA I, ISAI, OsISAI,OsSTA201, OsBmy7, Bmy7,Amy3D/E*(RAmy3D/E), alpha Amy8, alphaAmy8, AmyII-3, AMY1.4, Amy3E, Amy3D/E*, RAmy3D/E, Amy9, RAmy3E, alphaAmy8-C, AMY3E/AMY1.4, OsAmy3E, OsRamy3E,OsSTA246, STA246, OsBamy1, Bamy1, BAM2, OsBAM2, OsBmy9, Bmy9, BMY5, OsBMY5,SBEIII*, SBEIII, Sbe3, RBE3, QEIIa, QEIIA, BEIIb, BEIIB, SBEIIb, OsBEIIb, sbe3, SBE III, OsSBEIIb, SBEIIb,Amy3A/B/C*(RAmy3A/B/C), alpha Amy6, AmyII-5, AMY1.6, Amy1.6, Amy3B, BRAmy3A/B/C, Amy3A/B/C*, Amy6, RAmy3B, alphaAmy6-C, OsRamy3B, OsAmy3C,OsISA2, ISA II, OsISA II,OsSSIVa, SSIV-1, OsSSIV-1
50184	33529453	Brotman Y., Llorente-Wiegand C., Oyong G., Badoni S., Misra G., Anacleto R., Parween S., Pasion E., Tiozon R.N., Anonuevo J.J., deGuzman MK., Alseekh S., Mbanjo E.G.N., Boyd L.A., Fernie A.R., Sreenivasulu N.	The genetics underlying metabolic signatures in a brown rice diversity panel and their vital role in human nutrition.	Plant J.	106(2)	507-525	2021		
50185	33754577	Pan B.G., Mo H.Q., Wang W., Cai K.Z., Tian J.H., Cai Y.X.	Regulating effects of silicon on Cd-accumulation and stress-resistant responding in rice seedling.	Ying Yong Sheng Tai Xue Bao	32(3)	1096-1104	2021		
50186	33767323	Khahani B., Tavakol E., Shariati V., Rossini L.	Meta-QTL and ortho-MQTL analyses identified genomic regions controlling rice yield, yield-related traits and root architecture under water deficit conditions.	Sci Rep	11(1)	6942	2021		
50187	33767346	Su J., Xu K., Li Z., Hu Y., Hu Z., Zheng X., Song S., Tang Z., Li L.	Genome-wide association study and Mendelian randomization analysis provide insights for improving rice yield potential.	Sci Rep	11(1)	6894	2021		
50188	33660107	Kumar G., Dasgupta I.	The titers of rice tungro bacilliform virus dictate the expression levels of genes related to cell wall dynamics in rice plants affected by tungro disease.	Arch. Virol.	166(5)	1325-1336	2021		
50189	33337484	Hu Y., Wang L., Jia R., Liang W., Zhang X., Xu J., Chen X., Lu D., Chen M., Luo Z., Xie J., Cao L., Xu B., Yu Y., Persson S., Zhang D., Yuan Z.	Rice transcription factor MADS32 regulates floral patterning through interactions with multiple floral homeotic genes.	J. Exp. Bot.	72(7)	2434-2449	2021		
50190	33805566	Kushawaha A.K., Khan A., Sopory S.K., Sanan-Mishra N.	Priming by High Temperature Stress Induces MicroRNA Regulated Heat Shock Modules Indicating Their Involvement in Thermopriming Response in Rice.	Life (Basel)	11(4)		2021		
50191	33810593	Sun L.M., Che J., Ma J.F., Shen R.F.	Expression Level of Transcription Factor <i>ART1</i> Is Responsible for Differential Aluminum Tolerance in <i>Indica</i> Rice.	Plants (Basel)	10(4)		2021		
50192	33481019	Okamura M., Hirai M.Y., Sawada Y., Okamoto M., Oikawa A., Sasaki R., Arai-Sanoh Y., Mukouyama T., Adachi S., Kondo M.	Analysis of carbon flow at the metabolite level reveals that starch synthesis from hexose is a limiting factor in a high-yielding rice cultivar.	J. Exp. Bot.	72(7)	2570-2583	2021		
50193	33810044	Usman B., Zhao N., Nawaz G., Qin B., Liu F., Liu Y., Li R.	CRISPR/Cas9 Guided Mutagenesis of <i>Grain Size 3</i> Confers Increased Rice (<i>Oryza sativa</i> L.) Grain Length by Regulating cysteine proteinase Inhibitor and Ubiquitin-Related Proteins.	Int J Mol Sci	22(6)		2021		
50194	33711454	Wang A., Jiang Y., Shu X., Zha Z., Yin D., Liu Y., Zhang D., Xu D., Jiao C., Jia X., Ye X., Li S., Deng Q., Wang S., Zhu J., Liang Y., Zou T., Liu H., Wang L., Zhu J., Li P., Zhang Z., Zheng A.	Genome-wide association study-based identification genes influencing agronomic traits in rice (Oryza sativa L.).	Genomics	113(3)	1396-1406	2021		
50195	33654102	Sun S.K., Xu X., Tang Z., Tang Z., Huang X.Y., Wirtz M., Hell R., Zhao F.J.	A molecular switch in sulfur metabolism to reduce arsenic and enrich selenium in rice grain.	Nat Commun	12(1)	1392	2021	SAT1;3,SAT1;1,APRL1,SULTR1;1,SIR,ASTOL1	OsSAT, SAT, OsSAT1;3,OsSAT, SAT, OsSAT1;1,OsAPRL1, OsAPR1, APR1,OsSultr1;1, OsSul1;1, Sul1;1, OsSultr1;1(a), OsSultr1;1(b),OsSiR,RCS1, rcs1, OsOASTL-A2, OASTL-A2, OsASTOL1
50196	33773232	Prerna D.I., Govindaraju K., Tamilselvan S., Kannan M., Vasantharaja R., Chaturvedi S., Shkolnik D.	Influence of nanoscale micro-nutrient alpha-Fe2O3 on seed germination, seedling growth, translocation, physiological effects and yield of rice (Oryza sativa) and maize (Zea mays).	Plant Physiol. Biochem.	162	564-580	2021		
50197	33936555	Tharek M., Khairuddin D., Najimudin N., Ghazali A.H.	Plant Growth Promoting Potentials of Beneficial Endophytic <i>Escherichia coli</i> USML2 in Association with Rice Seedlings.	Tropical Life Sciences Research	32(1)	119-143	2021		
50198	33658224	He Z., Zou T., Xiao Q., Yuan G., Liu M., Tao Y., Zhou D., Zhang X., Deng Q., Wang S., Zheng A., Zhu J., Liang Y., Yu X., Wang A., Liu H., Wang L., Li P., Li S.	An L-type lectin receptor-like kinase promotes starch accumulation during rice pollen maturation.	Development	148(6)		2021	AP1,PPGM,PGI2,UGP2,HXK5,PBGLU,ONG1,HXK7,SPS1	LECRK-S.7, OsLecRK-S.7, OsDAF1, DAF1, OsLecRK5, LecRK5, OsAP1,OspPGM, pPGM ,Pgi2(Pgib), Pgib, Pgi_2, Pgi2, GPI-B, PGI-B, PHI-B, Pgi-b, PGI-b, SIS, OsSIS, OsPGI2,Ugp2, OsUgp2,OsHXK5,PBGlu, OsPBGlu,ong1-3, ong1-4, OsGH, GH,OsHXK7, OsHXK8,sps1, OsSPS1, SPS
50199	33237266	Koper K., Hwang S.K., Wood M., Singh S., Cousins A., Kirchhoff H., Okita T.W.	The Rice Plastidial Phosphorylase Participates Directly in Both Sink and Source Processes.	Plant Cell Physiol.	62(1)	125-142	2021		
50200	33780108	Campo S., S?nchez-Sanuy F., Camargo-Ram?rez R., G?mez-Ariza J., Baldrich P., Campos-Soriano L., Soto-Su?rez M., San Segundo B.	A novel Transposable element-derived microRNA participates in plant immunity to rice blast disease.	Plant Biotechnol. J.			2021		
50201	33740972	Liang Z., Zhang Q., Ji C., Hu G., Zhang P., Wang Y., Yang L., Gu X.	Reorganization of the 3D chromatin architecture of rice genomes during heat stress.	BMC Biol.	19(1)	53	2021		
50202	33662041	Li C., Xu Y., Fu S., Liu Y., Li Z., Zhang T., Wu J., Zhou X.	The unfolded protein response plays dual roles in rice stripe virus infection through fine-tuning the movement protein accumulation.	PLoS Pathog.	17(3)	e1009370	2021		
50203	33762605	Bheemanahalli R., Knight M., Quinones C., Doherty C.J., Jagadish S.V.K.	Genome-wide association study and gene network analyses reveal potential candidate genes for high night temperature tolerance in rice.	Sci Rep	11(1)	6747	2021		
50204	33808467	Khlaimongkhon S., Chakhonkaen S., Tongmark K., Sangarwut N., Panyawut N., Wasinanon T., Sikaewtung K., Wanchana S., Mongkolsiriwatana C., Chunwonges J., Muangprom A.	RNA Sequencing Reveals Rice Genes Involved in Male Reproductive Development under Temperature Alteration.	Plants (Basel)	10(4)		2021		
50205	33902855	Yang G., Fu S., Huang J., Li L., Long Y., Wei Q., Wang Z., Chen Z., Xia J.	The tonoplast-localized transporter OsABCC9 is involved in cadmium tolerance and accumulation in rice.	Plant Sci.	307	110894	2021		
50206	33805102	Zhang Z.B., Du S.Y., Ji B., Ji C.J., Xiao Y.W., Yan R.M., Zhu D.	New Helvolic Acid Derivatives with Antibacterial Activities from <i>Sarocladium oryzae</i> DX-THL3, an Endophytic Fungus from Dongxiang Wild Rice (<i>Oryza rufipogon</i> Griff.).	Molecules	26(7)		2021		
50207	33808359	Chang X., Ning D., Mao L., Wang B., Fang Q., Yao H., Wang F., Ye G.	Metabolic Analysis Reveals <i>Cry1C</i> Gene Transformation Does Not Affect the Sensitivity of Rice to Rice Dwarf Virus.	Metabolites	11(4)		2021		
50208	34121878	Ullah S., Zhao Q., Wu K., Ali I., Liang H., Iqbal A., Wei S., Cheng F., Ahmad S., Jiang L., Gillani S.W., Amanullah, Anwar S., Khan Z.	Biochar application to rice with 15N-labelled fertilizers, enhanced leaf nitrogen concentration and assimilation by improving morpho-physiological traits and soil quality.	Saudi J Biol Sci	28(6)	3399-3413	2021		
50209	33745012	Yang F., Debatosh D., Song T., Zhang J.H.	Light Harvesting-like Protein 3 Interacts with phytoene synthase and Is Necessary for Carotenoid and Chlorophyll Biosynthesis in Rice.	Rice (N Y)	14(1)	32	2021		
50210	33289530	Suzuki Y., Ishiyama K., Sugawara M., Suzuki Y., Kondo E., Takegahara-Tamakawa Y., Yoon D.K., Suganami M., Wada S., Miyake C., Makino A.	Overproduction of Chloroplast glyceraldehyde-3-phosphate dehydrogenase Improves Photosynthesis Slightly under Elevated [CO2] Conditions in Rice.	Plant Cell Physiol.	62(1)	156-165	2021		
50211	33737581	Liu C., Guo B., Li H., Fu Q., Li N., Lin Y., Xu G.	Azolla incorporation under flooding reduces grain cadmium accumulation by decreasing soil redox potential.	Sci Rep	11(1)	6325	2021		
50212	33684776	van Tol de Castro TA., Berbara R.L.L., Tavares O.C.H., Mello DFDG., Pereira E.G., Souza CDCB., Espinosa L.M., Garc?a AC.	Humic acids induce a eustress state via photosynthesis and nitrogen metabolism leading to a root growth improvement in rice plants.	Plant Physiol. Biochem.	162	171-184	2021		
50213	33692374	Panigrahi S., Panigrahy M., Kariali E., Dash S.K., Sahu B.B., Sahu S.K., Mohapatra P.K., Panigrahi K.C.S.	MicroRNAs modulate ethylene induced retrograde signal for rice endosperm starch biosynthesis by default expression of transcriptome.	Sci Rep	11(1)	5573	2021		
50214	33823360	Yang G., Yuan H., Ji H., Liu H., Zhang Y., Wang G., Chen L., Guo Z.	Effect of ZnO nanoparticles on the productivity, Zn biofortification, and nutritional quality of rice in a life cycle study.	Plant Physiol. Biochem.	163	87-94	2021		
50215	33761895	Yan S., Wu F., Zhou S., Yang J., Tang X., Ye W.	Zinc oxide nanoparticles alleviate the arsenic toxicity and decrease the accumulation of arsenic in rice (Oryza sativa L.).	BMC Plant Biol.	21(1)	150	2021		
50216	33775371	Liang C., Zhang Y., Ren X.	Calcium regulates antioxidative isozyme activity for enhancing rice adaption to acid rain stress.	Plant Sci.	306	110876	2021		
50217	33749413	Olawale O., Raphael D.O., Akinbile C.O., Ishuwa K.	Comparison of heavy metal and nutrients removal in <i>Canna indica</i> and <i>Oryza sativa L.</i> based constructed wetlands for piggery effluent treatment in north-central Nigeria.	Int J Phytoremediation		1-9	2021		
50218	33854848	Li Q., Liu G., Bao Y., Wu Y., You Q.	Evaluation and application of tools for the identification of known microRNAs in plants.	Appl Plant Sci	9(3)	e11414	2021		
50219	33806152	Korotkov E.V., Kamionskya A.M., Korotkova M.A.	Detection of Highly Divergent Tandem Repeats in the Rice Genome.	Genes (Basel)	12(4)		2021		
50220	33784567	Guedes FRCM., Maia C.F., Silva BRSD., Batista B.L., Alyemeni M.N., Ahmad P., Lobato AKDS.	Exogenous 24-Epibrassinolide stimulates root protection, and leaf antioxidant enzymes in lead stressed rice plants: Central roles to minimize Pb content and oxidative stress.	Environ. Pollut.	280	116992	2021		
50221	33661371	Kajiya-Kanegae H., Ohyanagi H., Ebata T., Tanizawa Y., Onogi A., Sawada Y., Hirai M.Y., Wang Z.X., Han B., Toyoda A., Fujiyama A., Iwata H., Tsuda K., Suzuki T., Nosaka-Takahashi M., Nonomura K.I., Nakamura Y., Kawamoto S., Kurata N., Sato Y.	OryzaGenome2.1: Database of Diverse Genotypes in Wild Oryza Species.	Rice (N Y)	14(1)	24	2021		
50222	33677735	Ninmanont P., Wongchai C., Pfeiffer W., Chaidee A.	Salt stress of two rice varieties: root border cell response and multi-logistic quantification.	Protoplasma			2021		
50223	33809618	Yadav A.K., Kumar A., Grover N., Ellur R.K., Bollinedi H., Krishnan S.G., Bhowmick P.K., Vinod K.K., Nagarajan M., Singh A.K.	Genome-Wide Association Study Reveals Marker-Trait Associations for Early Vegetative Stage Salinity Tolerance in Rice.	Plants (Basel)	10(3)		2021		
50224	33724398	Breia R., Conde A., Badim H., Fortes A.M., Ger?s H., Granell A.	Plant SWEETs: from sugar transport to plant-pathogen interaction and more unexpected physiological roles.	Plant Physiol.			2021		
50225	33741528	Zhao H., Li Z., Amjad H., Zhong G., Khan M.U., Zhang Z., Lin W.	Proteomic analysis reveals a role of ADP-glucose pyrophosphorylase in the asynchronous filling of rice superior and inferior spikelets.	Protein Expr. Purif.	183	105875	2021		
50226	33676377	Sari D.R.T., Paemanee A., Roytrakul S., Cairns J.R.K., Safitri A., Fatchiyah F.	Black rice cultivar from Java Island of Indonesia revealed genomic, proteomic, and anthocyanin nutritional value.	Acta Biochim. Pol.	68(1)	55-63	2021		
50227	33753194	Wu B., Xie C., Zhang Q., Wang B., Liu W.	Characteristics of starch from rice seeds modified by T-DNA insertion of ascorbate peroxidase 2.	Int. J. Biol. Macromol.	180	533-538	2021		
50228	33854279	Nair M.M., Shylaraj K.S.	Introgression of dual abiotic stress tolerance QTLs (<i>Saltol</i> QTL and <i>Sub1</i> gene) into Rice (<i>Oryza sativa</i> L.) variety Aiswarya through marker assisted backcross breeding.	Physiol Mol Biol Plants	27(3)	497-514	2021		
50229	33806722	Gho Y.S., Song M.Y., Bae D.Y., Choi H., Jung K.H.	Rice PIN Auxin Efflux Carriers Modulate the Nitrogen Response in a Changing Nitrogen Growth Environment.	Int J Mol Sci	22(6)		2021		
50230	33684775	Singh A.P., Mani B., Giri J.	OsJAZ9 is involved in water-deficit stress tolerance by regulating leaf width and stomatal density in rice.	Plant Physiol. Biochem.	162	161-170	2021		
50231	0	Mu H., JianHao Ke, Liu W., ChuXiong Zhuang, WingKin Yip	UDP-glucose pyrophosphorylase2 (OsUgp2), a pollen-preferential gene in rice, plays a critical role in starch accumulation during pollen maturation	Chinese Science Bulletin	54	234-243	2009	UGP2	Ugp2, OsUgp2
50232	20100696	Zhao L., Hu Y., Chong K., Wang T.	ARAG1, an ABA-responsive DREB gene, plays a role in seed germination and drought tolerance of rice.	Ann. Bot.	105(3)	401-9	2010	ERF35	OsERF#035, OsERF035, OsERF35, AP2/EREBP#148, AP2/EREBP148, OsAP211, ARAG1, OsARAG1
50233	18612241	Baek I.S., Park H.Y., You M.K., Lee J.H., Kim J.K.	Functional conservation and divergence of FVE genes that control flowering time and cold response in rice and Arabidopsis.	Mol. Cells	26(4)	368-72	2008	FVE	OsWD40-23, WD40-23, OsFVE,  OsDWD5, DWD5
50234	33345419	Kim Y.J., Kim M.H., Hong W.J., Moon S., Kim E.J., Silva J., Lee J., Lee S., Kim S.T., Park S.K., Jung K.H.	GORI, encoding the WD40 domain protein, is required for pollen tube germination and elongation in rice.	Plant J.	105(6)	1645-1664	2021	GORI	OsWD40-89, WD40-89, OsGORI, OsABT, ABT
50235	17705786	Opassiri R., Pomthong B., Akiyama T., Nakphaichit M., Onkoksoong T., Mariena Ketudat Cairns, James R Ketudat Cairns	A stress-induced rice (Oryza sativa L.) beta-glucosidase represents a new subfamily of glycosyl hydrolase family 5 containing a fascin-like domain.	Biochem. J.	408(2)	241-9	2007	GH5BG	OsGH5BG
50236	33789420	V K., Chandrashekar B.K., K K., Ag S., Makarla U., Ramu V.S.	Disruption in the DNA Mismatch Repair Gene <i>MSH2</i> by CRISPR-<i>Cas9</i> in Indica Rice Can Create Genetic Variability.	J. Agric. Food Chem.	69(14)	4144-4152	2021	MSH2	OsMSH2
50237	0	Eui-Jung Kim, Yu-Jin Kim, Woo-Jong Hong, Lee C., Jong-Seong Jeon, Ki-Hong Jung	Genome-wide Analysis of root hair Preferred RBOH Genes Suggests that Three RBOH Genes are Associated with Auxin-mediated root hair Development in Rice	Journal of Plant Biology	62	229-238	2019	RBOHC	rbohC, OsrbohC, Os rbohC, OsRbohC, OsNox5, Nox5, OsrbohD, OsRboh5, RBOHA, OsRboh5, Rboh5
50238	34608507	Wang L., Ma Z., Kang H., Gu S., Mukhina Z., Wang C., Wang H., Bai Y., Sui G., Zheng W., Ma D.	Cloning and functional analysis of the novel rice blast resistance gene Pi65 in japonica rice.	Theor. Appl. Genet.			2021	PI65	Pi65(t), Pi65,
50239	34445331	Huang S., Hu L., Zhang S., Zhang M., Jiang W., Wu T., Du X.	Rice OsWRKY50 Mediates ABA-Dependent Seed Germination and Seedling Growth, and ABA-Independent Salt Stress Tolerance.	Int J Mol Sci	22(16)		2021	LEA3-1,WRKY50,SKC1,RAB16A,NCED2,P5CS	OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3, OsLEA3A, LEA3A,OsWRKY50,OsHKT8, HKT8, Os-HKT1;5, OsHKT1;5, HKT1;5, SKC1, qSKC-1(t), OsSKC1,Rab16A, rab21, RAB21, OsRab21, OsRAB21, OsRAB-21, OsRab16A, OsLEA29, rab16A, OsRAB16A,OSNCED2, OsNCED2, OsNCED5, NCED5,OsP5CS, P5CS1, OsP5CS1, OsALDH18B1, ALDH18B1, OsP5CS-1, P5CS-1
50240	34343399	Zhang L., Wang R., Xing Y., Xu Y., Xiong D., Wang Y., Yao S.	Separable regulation of POW1 in grain size and leaf angle development in rice.	Plant Biotechnol. J.	19(12)	2517-2531	2021	POW1,BIP120	OsPOW1, PANDA, OsPANDA, HPY1, OsHPY1, OsHARBI1-22, HARBI1-22,OsBIP120, qCTS-9, TAF2, OsTAF2
50241	0	Li R., Lu W., Gu J., Li X., Guo C., Xiao K.	Molecular characterization and functional analysis of OsPHY2, a phytase gene classified in histidine acid phosphatase type in rice (Oryza sativa L.)	Afr. J. Biotechnol.	10(54)	11110-11123	2011	PHY2	OsPHY2
50242	15086817	Wan-Chi Chou, Ya-Wen Huang, Wen-Su Tsay, Tzen-Yuh Chiang, Dinq-Ding Huang, Hao-Jen Huang	Expression of genes encoding the rice translation initiation factor, eIF5A, is involved in developmental and environmental responses.	Physiol Plant	121(1)	50-57	2004	EIF4D,EIF5A1	eIF-4d, EIF4D, elF-4D, OseIF5A-2, eIF5A-2, EIF5A2,OseIF5A-1, eIF5A-1
50243	30686242	X Xue, Z X Cao, X T Zhang, Y Wang, Y F Zhang, Z X Chen, X B Pan, S M Zuo	Overexpression of OsOSM1 Enhances Resistance to Rice Sheath Blight.	Plant Dis.	100(8)	1634-1642	2016	OSM2,OSM1,PR10A,PAL1,COI1	OsOSM2,OsOSM1,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6,OsCOI1a, OsCOI1, Os_F0728, COI1a, F0728,  OsFBL4, FBL4
50244	0	S. I. Sikdar M., S. Kim J.	Isolation of a gene encoding 3-Isopropylmalate dehydrogenase from rice	Russian Journal of Plant Physiology	58	190-196	2011	IPMDH	OsIPMDH
50245	15737637	Kimura S., Saotome A., Uchiyama Y., Mori Y., Tahira Y., Sakaguchi K.	The expression of the rice (Oryza sativa L.) homologue of Snm1 is induced by DNA damages.	Biochem. Biophys. Res. Commun.	329(2)	668-72	2005	SNM1	OsSnm1
50246	34197672	Qiu T., Zhao X., Feng H., Qi L., Yang J., You-Liang Peng, Zhao W.	OsNBL3, a mitochondrion-localized pentatricopeptide repeat protein, is involved in splicing nad5 intron 4 and its disruption causes lesion mimic phenotype with enhanced resistance to biotic and abiotic stresses.	Plant Biotechnol. J.	19(11)	2277-2290	2021	CHT8,CHIB1,PR1A,_,PR10A,PR5,WRKY45,NBL3,WRKY62	Cht8, OsChia2a, Cht2, Rcht2, Chia2a, CHIT14, OsCHIT14, OsPR3,Oschib1, chib1, PR-8, PR8, OsPR8, OsPR8b, PR8b,OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1, OsPR1b, PR1alpha, OsPR1alpha,OsPR2, PR2, OsGlu1, Glu1,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsPR5, Pir2, PR-5, PR5-1,OsWRKY45, OsWRKY45-1, OsWRKY45-2, WRKY45-1, WRKY45-2,OsNBL3,OsWRKY62, OsWRKY62.1, OsWRKY62.2, XB10, OsWRKY62-1, OsWRKY62-2
50247	34250718	Zhang H., Chen C., Li L., Tan X., Wei Z., Li Y., Li J., Yan F., Chen J., Sun Z.	A rice LRR receptor-like protein associates with its adaptor kinase OsSOBIR1 to mediate plant immunity against viral infection.	Plant Biotechnol. J.	19(11)	2319-2332	2021	SOBIR1,RLP1	PK, OsSOBIR1,OsRLP1
50248	34246801	Shi S., Wang H., Nie L., Tan D., Zhou C., Zhang Q., Li Y., Du B., Guo J., Huang J., Wu D., Zheng X., Guan W., Shan J., Zhu L., Chen R., Xue L., Linda L Walling, He G.	Bph30 confers resistance to brown planthopper by fortifying sclerenchyma in rice leaf sheaths.	Mol Plant	14(10)	1714-1732	2021	BPH30,BPH40	Bph33, Bph30,Bph40, OsBPH40
50249	26055993	Md Mahfuz Alam, Nakamura H., Ichikawa H., Miyao A., Hirochika H., Kobayashi K., Yamaoka N., Nishiguchi M.	Response of an aspartic protease gene OsAP77 to fungal, bacterial and viral infections in rice.	Rice (N Y)	7(1)	9	2014	AP77	OsAP77
50250	34290143	Zheng K., Wang L., Zeng L., Xu D., Guo Z., Gao X., Dong-Lei Yang	The effect of RNA polymerase V on 24-nt siRNA accumulation depends on DNA methylation contexts and histone modifications in rice.	Proc. Natl. Acad. Sci. U.S.A.	118(30)		2021	NRPE1	OsNRPE1, OsFEM3, FEM3
50251	27135493	Sarah Russell French, Yousef Abu-Zaitoon, Md Myn Uddin, Bennett K., Heather M Nonhebel	Auxin and Cell Wall Invertase Related Signaling during Rice Grain Development.	Plants (Basel)	3(1)	95-112	2014	_,GIF1,PMEI10,LTPL32,IAA29,HAP3D,INVINH3,YUCCA9,DEFL13,_,_,YUCCA12,PMEI14,_,YUCCA11,PMEI31	OsEnS-142, ENS142,gif1, CIN2, OsCIN2, OsGIF1, WB1, OsWB1, GIF1/OsCIN2,INVINH/PMEI, OsPMEI10,OSLTPL32,OsIAA29, OsEnS-141,OsHAP3D, OsEnS-83, OsNF-YB9, NF-YB9, NFYB9, OsLEC1A, LEC1A,OsINVINH3, OS-INVINH3, OsPMEI19, PMEI19,OsYUCCA9, OsYUC9, YUC9,OsEnS-108, EnS-108, DEFL, OsDEFL13,INVINH/PMEI,INVINH/PMEI,OsYUCCA12, OsYUC12, YUC12,INVINH/PMEI, OsPMEI14,INVINH/PMEI,OsYUCCA11, OsYUC11, YUC11,INVINH/PMEI, OsPMEI31
50252	14657403	Nicholas J Bate, Niu X., Wang Y., Kellie S Reimann, Timothy G Helentjaris	An invertase inhibitor from maize localizes to the embryo surrounding region during early kernel development.	Plant Physiol.	134(1)	246-54	2004	INVINH3,INVINH2,INVINH1,PMEI46	OsINVINH3, OS-INVINH3, OsPMEI19, PMEI19,OsINVINH2, OS-INVINH2, OsPMEI20, PMEI20,OsINVINH1, OS-INVINH1, OsPMEI11, PMEI11,PMEI, OsPMEI46
50253	34323980	Gao Q., Zhang N., Wei-Qing Wang, Shao-Yan Shen, Bai C., Xian-Jun Song	The ubiquitin-interacting motif-type ubiquitin receptor HDR3 interacts with and stabilizes the histone acetyltransferase GW6a to control the grain size.in rice.	Plant Cell	33(10)	3331-3347	2021	HDR3,MST6,GW6A,HDR12,MEK19,DA1,ERF104,MYB10,HDR3.1,_,SAUR56,GW2	OsHDR3,OsMST6, STP6, OsSTP6,OsglHAT1, glHAT1, GW6a, OsGW6a, OsGNAT1, GNAT1,OsHDR12,OsMEK19,OsDA1, HDR6, OsHDR6,DERF3, OsDERF3, OsERF#104, OsERF104, AP2/EREBP#152, AP2/EREBP152, RAP2, OsRAP2,OsMyb10, Os2R_MYB82, 2R_MYB82,OsHDR3.1,OsNPK1-PK, NPK1-PK, OsMKKK62, MKKK62, OsMAPKKK62, MAPKKK62, MEK7, OsMEK7,OsSAUR56,OsGW2, OsRING429, RING429, GNL44, OsGNL44
50254	34367195	Song K., Dae-Woo Lee, Kim J., Kim J., Guim H., Kim K., Jong-Seong Jeon, Choi G.	EARLY STARVATION 1 Is a Functionally Conserved Protein Promoting Gravitropic Responses in Plants by Forming Starch Granules.	Front Plant Sci	12	628948	2021	ESV1	OsESV1, LSD2, OsLSD2
50255	34389920	F?rat Kurt, Filiz E., Adnan Ayd?n	Genome-wide identification of serine acetyltransferase (SAT) gene family in rice (Oryza sativa) and their expressions under salt stress.	Mol. Biol. Rep.	48(9)	6277-6290	2021	SAT1;1,SAT3,SAT1;2,SAT2;1,SAT1;3,SAT2;2	OsSAT, SAT, OsSAT1;1,OsSAT, SAT, OsSAT3,OsSAT1;2,OsSAT2;1,OsSAT, SAT, OsSAT1;3,OsSAT2;2
50256	34420062	Zhan P., Wei X., Xiao Z., Wang X., Ma S., Lin S., Li F., Bu S., Liu Z., Zhu H., Liu G., Zhang G., Wang S.	gw10, a member of P450 subfamily regulates grain size and grain number in rice.	Theor. Appl. Genet.	134(12)	3941-3950	2021	GW10	OsGW10
50257	34449974	Ma K., Han J., Zhang Z., Li H., Zhao Y., Zhu Q., Xie Y., Yao-Guang Liu, Chen L.	OsEDM2L mediates m6 A of EAT1 transcript for proper alternative splicing and polyadenylation regulating rice tapetal degradation.	J Integr Plant Biol	63(11)	1982-1994	2021	RADC1,EDM2L,TDR,BHLH142,EAT1,AP37 ,_,_	OsAP25, Radc1, OsRADC1, AP25,OsEDM2L,tdr, OsbHLH005, bHLH005, OsbHLH5, bhlh5, TDR1, OsTDR, OsTDR1, OsMYC5, MYC5,OsbHLH142, bHLH142, TIP2, OsTIP2, TIP2/TDR/bHLH142,OsEAT1, OsbHLH141, EAT1/DTD1, bHLH141, DTD1, DTD, DLN120, OsDLN120,OsAP37,,
50258	34447396	Maeda M., Okamoto N., Araki N., Kimura Y.	Purification, Characterization, and Gene Expression of Rice Endo-beta-<i>N</i>-Acetylglucosaminidase, Endo-Os.	Front Plant Sci	12	647684	2021	END-OS	Endo-Os
50259	34445464	Huang J., Zhang Q., He Y., Liu W., Xu Y., Liu K., Xian F., Li J., Hu J.	Genome-Wide Identification, Expansion Mechanism and Expression Profiling Analysis of <i>GLABROUS1 Enhancer-binding protein</i>?<i>(GeBP)</i> Gene Family in Gramineae Crops.	Int J Mol Sci	22(16)		2021	GEBP4,GEBP9,GEBP10,GEBP1,GEBP5,GEBP13,GEBP11,GEBP12,GEBP3,GEBP8,GEBP6,DLN97,GEBP2	OsGeBP4, GeBP4,OsGeBP9, GeBP9,OsGeBP10, GeBP10,OsGeBP1, GeBP1,OsGeBP5, GeBP5,OsGeBP13, GeBP13,OsGeBP11, GeBP11,OsGeBP12, GeBP12,OsGeBP3, GeBP3,OsGeBP8, GeBP8,OsGeBP6, GeBP6,OsDLN97, OsGeBP7, GeBP7,OsGeBP2, GeBP2
50260	34488627	Wang M., Zhou F., Hong Mei Wang, De Xing Xue, Yao-Guang Liu, Qun Yu Zhang	A rice mTERF protein v14 sustains photosynthesis establishment and temperature acclimation in early seedling leaves.	BMC Plant Biol.	21(1)	406	2021	V14,_,_,_	OsV14,,,
50261	34498389	Li G., Xu B., Zhang Y., Xu Y., Najeeb Ullah Khan, Xie J., Sun X., Guo H., Wu Z., Wang X., Zhang H., Li J., Xu J., Wang W., Zhang Z., Li Z.	RGN1 controls grain number and shapes panicle architecture in rice.	Plant Biotechnol. J.			2021	LOG1,RGN1	OsLOG1, LOG, Log, log, OsLOG,OsRGN1, Os2R_MYB10, 2R_MYB10 
50262	34579409	Tezuka D., Matsuura H., Saburi W., Mori H., Imai R.	A Ubiquitously Expressed UDP-Glucosyltransferase, <i>UGT74J1</i>, Controls Basal Salicylic Acid Levels in Rice.	Plants (Basel)	10(9)		2021	UGT75H1,UGT75K1,UGT74H4,UGT74J3,UGT75K2,UGT75G1,SGT,IAGLU,_,UGT74J1,UGT74J13,UGT84C1,UGT84E2,UGT74J5,EDR1,UGT74H1,UGT75J1,UGT75F2,UGT75E1,UGT84E1,UGT74J2,UGT74J14	OsUGT75H1,OsUGT75K1,OsUGT74H4, SGT1, OsSGT1, UGT74H12, OsUGT74H12,OsUGT74J3,OsUGT75K2,OsUGT75G1,OsSGT, UGT74H3, OsUGT74H3,OsIAGLU, OsIAAGLU, IAAGLU, OsIAGT1, IAGT1, UGT74A2, OsUGT74A2,OsUGT74H4, UGT74H4,OsUGT74J1,OsUGT74J13,OsUGT84C1,OsUGT84E2,UDP-GT, Os79, OsUGT74J5,OsUGT84D1, UGT84D1, OsEDR1,OsUGT74H1,OsUGT75J1,OsIAGLU, IAGLU, OsUGT75F2, OsUGT75A, UGT75A,OsUGT75E1,OsUGT84E1,OsUGT74J2,OsUGT74J14
50263	34576034	Hu P., Wen Y., Wang Y., Wu H., Wang J., Wu K., Chai B., Zhu L., Zhang G., Gao Z., Ren D., Zhu L., Guo L., Zeng D., Xu J., Yan S., Qian Q., Rao Y., Hu J.	Identification and Characterization of <i>Short crown root 8</i>, a Temperature-Sensitive Mutant Associated with crown root Development in Rice.	Int J Mol Sci	22(18)		2021	SCR8	OsSCR8
50264	34597584	Gao M., He Y., Yin X., Zhong X., Yan B., Wu Y., Chen J., Li X., Zhai K., Huang Y., Gong X., Chang H., Xie S., Liu J., Yue J., Xu J., Zhang G., Deng Y., Wang E., Tharreau D., Guo-Liang Wang, Yang W., He Z.	Ca2+ sensor-mediated ROS scavenging suppresses rice immunity and is exploited by a fungal effector.	Cell	184(21)	5391-5404.e17	2021	APIP6,CATB,ROD1,VIP2	OsAPIP6,  OsRING382, RING382, IPI7, OsIPI7,CatB, CAT-B, OsCatB, OsCATB, OsCAT1B, CAT1B, CAT2, OsCAT2,OsROD1,IPI1, RIP1, OsVIP2, OsIPI1, OsRIP1,  OsRING103, RING103
50265	34599593	Luo L., Yang X., Guo M., Lan T., Yu Y., Mo B., Chen X., Gao L., Liu L.	TRANS-ACTING SIRNA3-derived short interfering RNAs confer cleavage of mRNAs in rice.	Plant Physiol.			2021	TAS3A1,TAS3A2,TAS3D,TAS3B1,TAS3B2	TAS3a1, OsTAS3a1, OsTAS3a, TAS3a,OsTAS3a2, TAS3a2, OsTAS3e, TAS3e,OsTAS3d, TAS3d,TAS3b1, OsTAS3b1, OsTAS3a, TAS3a, OsTAS3b, TAS3b,OsTAS3b2, TAS3b2, OsTAS3c, TAS3c
50266	34633131	Zheng Y., Zhu Y., Mao X., Jiang M., Wei Y., Lian L., Xu H., Chen L., Xie H., Lu G., Zhang J.	SDR7-6, a short-chain alcohol dehydrogenase/reductase family protein, regulates light-dependent cell death and defence responses in rice.	Mol. Plant Pathol.	23(1)	78-91	2022	PR4,PR10A,PR1B,PR1A,PR5,SDR7-6	OsPR4, OsPR4a, PR4a, OsPR-4,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1, OsPR1a, PR1a,OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1, OsPR1b, PR1alpha, OsPR1alpha,OsPR5, Pir2, PR-5, PR5-1,OsSDR7-6
50267	34647689	Ren Z., Bai F., Xu J., Wang L., Wang X., Zhang Q., Feng C., Niu Q., Zhang L., Song J., Bao F., Liu L., He Y., Ma L., Tian W., Hou C., Li L.	A chloride efflux transporter, BIG RICE GRAIN 1, is involved in mediating grain size and salt tolerance in rice.	J Integr Plant Biol			2021	BIRG1	OsBIRG1
50268	34655511	Lei J., Teng X., Wang Y., Jiang X., Zhao H., Zheng X., Ren Y., Dong H., Wang Y., Duan E., Zhang Y., Zhang W., Yang H., Chen X., Chen R., Zhang Y., Yu M., Xu S., Bao X., Zhang P., Liu S., Liu X., Tian Y., Jiang L., Wang Y., Wan J.	Plastidic pyruvate dehydrogenase complex E1 component subunit Alpha1 is involved in galactolipid biosynthesis required for amyloplast development in rice.	Plant Biotechnol. J.			2021	_,PTPDC-E2,PTPDC-E1-BETA1,FLO19,PTPDC-E1-BETA2,_,LPD2,LPD1	ptPDC-E2, OsptPDC-E2,ptPDC-E2, OsptPDC-E2, PDH-E2, OsPDH-E2,ptPDC-E1-beta1, OsptPDC-E1-beta1, PDH-E1beta, OsPDH-E1beta,ptPDC-E1-alpha1, OsptPDC-E1-alpha1, PDH-E1alpha, OsPDH-E1alpha,ptPDC-E1-beta2, OsptPDC-E1-beta2,ptPDC-E2, OsptPDC-E2,ptPDC-E3, OsptPDC-E3, OsLPD2,ptPDC-E3, OsptPDC-E3, OsLPD1
50269	14630954	Chaban C., Waller F., Furuya M., Nick P.	Auxin responsiveness of a novel cytochrome p450 in rice coleoptiles.	Plant Physiol.	133(4)	2000-9	2003	CYP87A3	OsCYP87A3
50270	16541125	Xiong G.S., Hu X.M., Jiao Y.Q., Yu Y.C., Chu C.C., Li J.Y., Qian Q., Wang Y.H.	Leafy head2, which encodes a putative RNA-binding protein, regulates shoot development of rice.	Cell Res.	16(3)	267-76	2006	PLA2	pla2, pla2(pla2-1, pla2-2), plt2, LHD2, OsLHD2
50271	24964975	Dorion S., Rivoal J.	Clues to the functions of plant NDPK isoforms.	Naunyn Schmiedebergs Arch. Pharmacol.	388(2)	119-32	2015	NDPK4	OsNDPK4
50272	34266944	Dong S., Dong X., Han X., Zhang F., Zhu Y., Xin X., Wang Y., Hu Y., Yuan D., Wang J., Huang Z., Niu F., Hu Z., Yan P., Cao L., He H., Fu J., Xin Y., Tan Y., Mao B., Zhao B., Yang J., Yuan L., Luo X.	<i>OsPDCD5</i> negatively regulates plant architecture and grain yield in rice.	Proc. Natl. Acad. Sci. U.S.A.	118(29)		2021	EXPA5,EXPA1,PDCD5,AGAP,EXPA10,GNP1,GA3OX1	OsEXPA5, OsEXP5, osaEXPa1.20,OsEXP1, EXPA1, OsEXPA1, OsaEXPa1.16, RiExA,OsPDCD5,OsAGAP, OsC2DP13, C2DP13,OsEXPA10, OsEXP10, osaEXPa1.28,GA20OX1, OsGA20ox1, 20ox1, GA20ox-1, ga20ox1, Os20ox, C20OX2, OsGA20ox2, OsGA20ox-1, GA20ox1, OsGNP1,OsGA3ox1, GA3ox1, OsGA3OX1
50273	34272287	Rodrigues J.A., Hsieh P.H., Ruan D., Nishimura T., Sharma M.K., Sharma R., Ye X., Nguyen N.D., Nijjar S., Ronald P.C., Fischer R.L., Zilberman D.	Divergence among rice cultivars reveals roles for transposition and epimutation in ongoing evolution of genomic imprinting.	Proc. Natl. Acad. Sci. U.S.A.	118(29)		2021		
50274	34360953	Zou W., Chen J., Meng L., Chen D., He H., Ye G.	The Rice Cation/H+ Exchanger Family Involved in Cd Tolerance and Transport.	Int J Mol Sci	22(15)		2021	CAX2,CAX1B,CAX1C,CAX3,CAX1A,CAX4	OsCAX2, CAX5, OsNCX7, OsNCX7.1, OsNCX7.2, NCX7, OsVCX2, OsOSCA1.2, OSCA1.2,OsCAX1b, CAX1b, CAX3, OsNCX10, NCX10,OsCAX1c, CAX1c, CAX4, OsNCX5, OsNCX5.1, OsNCX5.2, NCX5,OsCAX3, CAX6, OsNCX9, OsNCX9.1, OsNCX9.2, NCX9,OsCAX1a, CAX1a, CAX1, OsCAX1, OsNCX2, OsNCX2.1, OsNCX2.2, NCX2, OsVCAX1a,CAX2, OsCAX2, OsCAX4, OsSTA47, OsNCX3, NCX3
50275	34242244	Mutsuro-Aoki H., Teramura H., Tamukai R., Fukui M., Kusano H., Schepetilnikov M., Ryabova L.A., Shimada H.	Dissection of a rice OsMac1 mRNA 5' UTR to uncover regulatory elements that are responsible for its efficient translation.	PLoS ONE	16(7)	e0253488	2021	MAC1	OsMac1, Mac1
50276	34439766	Ikram A.U., Ding Y., Su Y.	<i>OsARP6</i> Is Involved in Internode Elongation by Regulating Cell-Cycle-Related Genes.	Biomolecules	11(8)		2021	PIE1,CDC2-2,CYCA3;2,CDKD;1,CYCB2;2,ARP6,CYCB1;1,CDC2-1	OsPIE1, CHR709, OsCHR709,cdc2Os-2, CDC2Os-2, CDKA-2, CDKA;2, Orysa;CDKA;2, Rcdc2-2, OsCDKA;2, OsCDKA2, CDKA2, CDKA;1, OsCDKA;1, CDC20S-2, OsCDC20S-2,OsCYCA3;2, CycA3;2, CycA3;os;2, Orysa;CycA3;2, CYCA2.1, CYCA2;1,CDKD;1, Orysa;CDKD;1, R2, OsR2, CAK R2, CDKD1;3 ,cycB2;2 (=cycOs2), cycB2;2, cycOs2, CycB2;2, CycOs2, CYCB2-2, CYCOS2, CycB2-Os2, CYCB2, CycB2;os;2, OsCycB2;2, Orysa;CycB2;2, OsCYCOS2, Os;cycB2;2, CYCB2.2, OsCYCB2.2,OsARP6,CycB1;1, CycB1;os;1, Orysa;CycB1;1, OsCycB1;1, CyclaZm, CYCIaZm, OsCYCIaZm, OsCYCB1;4,cdc2Os-1, CDC2Os-1, CDKA-1, CDKA;1, Orysa;CDKA;1, OsCDKA;1, cdc2Os1, Rcdc2-1, OsCDKA1, CDKA1, CDC20S-1, OsCDC20S-1 
50277	34360677	Li M., Fu D., Xu T., Wu C.	<i>VPB1</i> Encoding BELL-like homeodomain Protein Is Involved in Rice Panicle Architecture.	Int J Mol Sci	22(15)		2021	RAG,SHAT1,ARF6B,ARF1,ARF3,ARF2,SH5,ARF13,MFO1,SNB,MADS24,ARF7A,SHO1,FON1,GNP1,MADS58,PIL13,BOP1,NPY2 ,ASP1,LHS1,ARF16	MADS3, OsMADS3, OsMADS3(t), RMADS222, RAG1, rf3,OsSHAT1, AP2/EREBP#043, AP2/EREBP43, AP2-5, DLN124, OsDLN124, ObSHAT1, OgSHAT1, OrSHAT1 ,OsARF6b, OsARF25, ARF25,OsARF1, arf1, OsARF23, ARF23,OsARF3, ETT3, Os ETT3, OsETT3, DLN20, OsDLN20, ARF4, OsARF3lb, ARF3lb,OsARF2, OsARF4, ARF4,OsSH5, RI, SH5/RI, OsRI, VPB1, OsVPB1,OsARF13, OsARF12, ARF12,OsMADS6, MADS6, OsMFO1,AP2/EREBP#073, AP2/EREBP73, AP2-3, OsAP2-3, SSH1, OsSSH1, OsSNB, DLN181, DLN181a, DLN181b, OsDLN181, OsDLN181a, OsDLN181b, SUI4, OsSUI4, SUI4/SNB,OsMADS24, MADS8, OsMADS8, OsMADS8/24 ,OsARF7a, OsARF19, ARF19, OsARF7,sho1, DCL4, OsDCL4, Os DCL4, Dcl4 ,OsFON1, fon1, OsRLCK219, RLCK219,GA20OX1, OsGA20ox1, 20ox1, GA20ox-1, ga20ox1, Os20ox, C20OX2, OsGA20ox2, OsGA20ox-1, GA20ox1, OsGNP1,OsMADS58,OsPIL1, OsPIL13, OsbHLH152, bHLH152, PIF7, OsPIF7, OsPIF4, PIF4, OsPIF1,OsNPR5, NPR5, NH4, OsNH4, OsBOP1,  OsBTBA3, BTBA3,OsNPY2 ,  OsBTBN14, BTBN14,OsLIS-L1, OsWD40-155, ASP1, TPR2, OsTPR2, OsREL2, REL2, OsTPL3, TPL3, OsTPL2, TPL2, ASP-LSL,OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO, OsLHS1, OsLG3b, LG3b, qLGY3, LGY3, DLN80, OsDLN80, OLR, OsOLR, GW3p6, OsGW3p6, OsMADS1GW3p6, MADS1GW3p6, qLGY3/OsLG3b/GW3p6,OsARF16
50278	34251486	Chen J., Wang L., Jin X., Wan J., Zhang L., Je B.I., Zhao K., Kong F., Huang J., Tian M.	Oryza sativa ObgC1 Acts as a Key Regulator of DNA Replication and Ribosome Biogenesis in Chloroplast Nucleoids.	Rice (N Y)	14(1)	65	2021	TSV3,OBGC1	OsObgC2, ObgC2, TSV3/OsObgC2,OsObgC1, ObgC1
50279	34329044	Feng S.J., Liu X.S., Cao H.W., Yang Z.M.	Identification of a rice metallochaperone for cadmium tolerance by an epigenetic mechanism and potential use for clean up in wetland.	Environ. Pollut.	288	117837	2021		
50280	34238989	Xue J., Lu D., Wang S., Lu Z., Liu W., Wang X., Fang Z., He X.	Integrated transcriptomic and metabolomic analysis provides insight into the regulation of leaf senescence in rice.	Sci Rep	11(1)	14083	2021	KAT1,RCCR1,_,NYC3,NAC58,MYB48,MYB8,DLN31,_,C4H2,CHS,CHI3,4CL3,_,_,NOL,AMTR1	OsI57, I57, OsKAT1, OsACAA1, ACAA1,OsRCCR1, OsRCCR, RCCR,R2R3-MYB, MYB48/59, OsMYB48/59, Os2R_MYB98, 2R_MYB98,nyc3, OsNYC3, PPH,OsNAP, NAP, ONAC058, ONAC58, Os PS1, PS1, OsCTb1, CTb1,OsMYB48, OsMYB48-1, OsMYB48-2, OsMYB59, MYB59, Os2R_MYB19, 2R_MYB19 ,OsMYB8, OsMYB305, MYB305, Os2R_MYB9, 2R_MYB9 ,R2R3-MYB, OsDLN31, MYB3, OsMYB22, MYB22, Os2R_MYB18, 2R_MYB18 ,OsPAL02, PAL02, OsPAL5, PAL5, OsPAL2. PAL2, OsPAL1,OsC4H, OsC4HL, C4H, OsC4H2,CHS*, Oschs, chs, chas, OsCHS, OsCHS1, CHS1, OsPKS26, PKS26, OsCHS24, CHS24, OsCHS27, CHS27,gh1, GH1, OsGH1, OsCHI, Cfi, CHI, OsCHI3,Os4CL3, Os4CL2, Os4CL, 4CL2, 4CL,OsMyb7, Myb7, OsMYB102, MYB102, Os2R_MYB71, 2R_MYB71,OsMYB4, Osmyb4, OsMyb4, MYB4, OsMYB55, MYB55, OsMyb8, MYB8, OsMYB13b, MYB13b, OsMYB15, MYB15, Os2R_MYB46, 2R_MYB46,nol, NOL1, OsNOL, OsNOL1,Osh36, OsH36, H36, OsAMTR1
50281	34371659	Jin X., Baysal C., Drapal M., Sheng Y., Huang X., He W., Shi L., Capell T., Fraser P.D., Christou P., Zhu C.	The Coordinated Upregulated Expression of Genes Involved in MEP, Chlorophyll, Carotenoid and Tocopherol Pathways, Mirrored the Corresponding Metabolite Contents in Rice Leaves during De-Etiolation.	Plants (Basel)	10(7)		2021	YGL10,GRY340,HGGT,HMGS3,FGL,HMGRII,ZDS,IPI,DXS1,PSY1,MCS,HMGRIII,HMGS1,DXS3,HMGS2,VTE4,CDS5,HYD2,HMGRI,VTE1,PDA,VTE2,HDS,DXR,LYCE,DXS2,PSY2,PORA,LYL1,MK,LAS1,YGL1,PMK,CMS,LCYB	CAO, OsCAO, CAO1, OsCAO1, Oslls1, Lls1, DVR, PGL,OsCMK, CMK, OsIspE, IspE, OsGRY340, AL4, OsAL4,OsHGGT, OsHST, HST,OsHMGS3,fgl(fl), fl, fgl, OsFGL, OsPorB, PoPA, PORA, porA, OsPORA, PORB, OsPORB,HMGR II, OsHMGRII, Hmg2, HMGR2, HMGR 2, OsHMGR2, OsHMGR2, HMGR1, OsHMGR1,OsZDS,OsIPI, ipi, OsIPPI1, IPPI1,CLA1, OsDXS1, dxs1, OsDXS, DXS, OsTKL1, TKL1,OsPSY1 ,OsMCS, IspF, OsIspF, OsMDS, MDS,HMGR III, OsHMGRIII, Hmg3, HMGR3, HMGR 3, OsHMGR3, HMGR2, OsHMGR2, OsOMT,OsHMGS1,OsDXS, OsDXS3, dxs3, DXS2, OsDXS2,OsHMGS2,OsVTE4, OsgammaTMT, gammaTMT,OsCDS5, OsVTE5, VTE5,OsBCH3, BCH3, OsHYD2, OsBCH2, BCH2,HMGR I, OsHMGRI, Hmg1, HMGR1, HMGR 1, OsHMGR1,OsVTE1,PDS1, PDS, OsPDS, Pds, OsPDA,OsVTE2, SGD1, OsSGD1, RTD1, OsRTD1, OsHPT, HPT ,OsHDS, OsIspG, IspG,OsDXR, OsIspC, IspC,OsLCYe, OsLCYepsilon, LCYepsilon, epsilon-LCY, OsLYCE,OsDXS2, dxs2,OsPSY2,OsPorA, OsPORA,OsChl P, CHL P, ChlP, OsGGRI, GGRI, OsGGR, GGR, OsGGR1, GGR1, OsGGR1/LYL1/OsChl P,OsMK,HDR, OsHDR, OsIspH, IspH, OsHDR1, HDR1, OsLAS1, LAS1/OsHMBPP, OsHMBPP, HMBPP, OsIspH1, IspH1, YGL3, OsYGL3,OsYGL1, CHLG, Ygl1, CS, OsCHLG,OsPMK,OsCMS, OsIspD, IspD, OsMCT, MCT,OsLCYbeta, OsLYCb, OsLCY, beta-OsLCY, beta-LCY
50282	34360554	Jang S., Cho J.Y., Do G.R., Kang Y., Li H.Y., Song J., Kim H.Y., Kim B.G., Hsing Y.I.	Modulation of Rice leaf angle and grain size.by Expressing <i>OsBCL1</i> and <i>OsBCL2</i> under the Control of <i>OsBUL1</i> Promoter.	Int J Mol Sci	22(15)		2021	BLR1,KO4,CPS1,EXPA3,BHLH80,IBH1,BHLH081,GNP1,LO9-177,KO5,EXPA4,ILI5	OsbHLH079, OsbHLH79, bHLH079, bHLH79, OsBLR1, OsBCL2, BCL2,OsKO4, OsKOL4, KOS1, CYP701A8, OsCYP701A8, OsKO2, CYP701A8/OsKOL4,OsCPS1, OsCPS1ent, OsCPS, Os CPS1, OsTPS4, TPS4, TPS29, OsTPS29, OsCPS1-L, OsCPS1-S,OsEXP3 (Os-EXP3), EXPA3, OsEXP3, Os-EXP3, OsaEXPa1.18, RiExD, Os-EXPA3, OsEXPA3,OsbHLH080, bHLH080, OsBCL1, BCL1,Os IBH1, OsIBH1, OsbHLH175, bHLH175,OsbHLH081, bHLH081, OsBC1, BC1,GA20OX1, OsGA20ox1, 20ox1, GA20ox-1, ga20ox1, Os20ox, C20OX2, OsGA20ox2, OsGA20ox-1, GA20ox1, OsGNP1,OsLO9-177,OsKO5, OSKOL5, KOS2, OsKOS2, CYP701A9, OsCYP701A9, OsKO1, KO1,OsEXP4 (Os-EXP4), OsEXPA4, OsEXP4, Os-EXP4, OsaEXPa1.22,ILI5, OsILI5, PGL2, OsPGL2, Os170, OsBUL1, BUL1, ILI5/PGL2, OsbHLH170, bHLH170
50283	34482912	Mehta S., Kumar A., Achary V.M.M., Ganesan P., Rathi N., Singh A., Sahu K.P., Lal S.K., Das T.K., Reddy M.K.	Antifungal activity of glyphosate against fungal blast disease on glyphosate-tolerant OsmEPSPS transgenic rice.	Plant Sci.	311	111009	2021		
50284	34226689	Li Q., Xu F., Chen Z., Teng Z., Sun K., Li X., Yu J., Zhang G., Liang Y., Huang X., Du L., Qian Y., Wang Y., Chu C., Tang J.	Synergistic interplay of ABA and BR signal in regulating plant growth and adaptation.	Nat Plants	7(8)	1108-1118	2021		
50285	34329842	Huang S., Ma Z., Hu L., Huang K., Zhang M., Zhang S., Jiang W., Wu T., Du X.	Involvement of rice transcription factor OsERF19 in response to ABA and salt stress responses.	Plant Physiol. Biochem.	167	22-30	2021		
50286	34343729	Kim J.H., Lee J.E., Jang C.S.	Regulation of Oryza sativa molybdate transporter1;3 degradation via RING finger E3 ligase OsAIR3.	J. Plant Physiol.	264	153484	2021		
50287	34356939	Prathi N.B., Durga Rani CV., Balachandran S.M., Prakasam V., Chandra Mohan Y., Nagalakshmi S., Srivastava S.K., Sundaram R.M., Mangrauthia S.K.	Genome-Wide Expression Profiling of Small RNAs in Indian Strain of <i>Rhizoctonia solani</i> AG1-1A Reveals Differential Regulation of milRNAs during Pathogenesis and Crosstalk of Gene Regulation.	J Fungi (Basel)	7(7)		2021	RL9,VSR3,HAP2F,_,_,_,_,_,ENODL9,MADS58,VSR1,RR28,CYP81E1,_	rl9, SLL1/RL9, SLL1, OsSLL1, OsADD1, ADD1, KANADI1, AH2, OsAH2, CL1, OsCL1,OsVSR3,OsHAP2F, NF-YA, CBF-B, NF-YA10, OsNF-YA10, NFYA10,OsFbox640, Fbox640, Os_F0395, OsFBX438, FBX438,  OsFBX438, FBX438,OsCER2, CER2, HMS1I, OsHMS1I, OsCER26L, CER26L,,,,OsENODL9,OsMADS58,OsVSR1,OsRR28, Rra22, OsPRR3, OsRRA22,Cyt P450 81E1, OsCYP81E1, OsCYP71U9, CYP71U9,
50288	34451568	Shin N.H., Lee O.N., Han J.H., Song K., Koh H.J., Yoo S.C., Chin J.H.	The Effect of Water Level in Rice Cropping System on Phosphorus Uptake Activity of <i>Pup1</i> in a <i>Pup1</i>+<i>Sub1</i> Breeding Line.	Plants (Basel)	10(8)		2021	ADH1,PSTOL1,SUB1A	Adh1, Adh1/2, adh1/adh2, OsADH1,Pstol1, OsPSTOL1, OsPSTOL, PSTOL, Pstol1/OsPupK46-2, OsPupK46-2, Pup1, PHO,Sub1A, Sub1A-1, Sub1A-2, OsSUB1A
50289	34269147	Wu Y., Fang W., Peng W., Jiang M., Chen G., Xiong F.	Sucrose transporter in rice.	Plant Signal Behav	16(11)	1952373	2021		
50290	34371572	Zhao D.D., Son J.H., Farooq M., Kim K.M.	Identification of Candidate Gene for internode length in Rice to Enhance Resistance to Lodging Using QTL Analysis.	Plants (Basel)	10(7)		2021	CYP94D11	OsCYP94D11, OsCYPq1, CYPq1
50291	34394169	Arabia S., Sami A.A., Akhter S., Sarker R.H., Islam T.	Comprehensive <i>in silico</i> Characterization of Universal Stress Proteins in Rice (<i>Oryza sativa</i> L.) With Insight Into Their Stress-Specific Transcriptional Modulation.	Front Plant Sci	12	712607	2021	USP17,RLCK249,RLCK207,USP5,USP7,USP36,USP2,RLCK69,USP44,RLCK68,RLCK87,USP3,USP37,USP24,USP18,RLCK122,RLCK315,USP21,USP30,RLCK61,USP14,RLCK201,USP6,USP1,_,RLCK39,RLCK362,RLCK194,USP22,USP42,RLCK285,USPA,RLCK307,USP19,RLCK280,RLCK361,USP11,USP13,USP12,RLCK105,USP26,USP43,RLCK281,USP25	OsUSP17, OsUSP3, USP3,OsRLCK249, OsUSP32, USP32,OsPUB47, PUB47, OsRLCK207, OsUSP29, USP29,  OsPUB47, PUB47,OsUSP5,OsUSP7,OsUSP36,OsUSP2,OsPUB48, PUB48, OsRLCK69, OsUSP10, USP10,  OsPUB48, PUB48,OsUSP44,OsRLCK68, OsUSP9, USP9,OsRLCK87, OsUSP15, USP15,OsUSP3, OsUSP5, USP5,OsUSP37,OsUSP24,OsUSP18,OsRLCK122, OsUSP20, USP20,OsRLCK315, OsUSP39, USP39,OsUSP21,OsUSP, USP, OsUSP30, OsUSP4, USP4,OsRLCK61, OsUSP8, USP8,OsUSP14,OsRLCK201, OsUSP28, USP28,OsUSP6,OsUsp1, OsUSP31, USP31,OsUSP1, USP1,OsRLCK39, OsUSP4, USP4,OsRLCK362, OsUSP41, USP41,OsPUB51, PUB51, OsRLCK194, OsUSP27, USP27,  OsPUB51, PUB51,OsUSP22,OsUSP42,OsPUB61, PUB61, OsRLCK285, OsUSP35, USP35,  OsPUB61, PUB61,UspA, OsUspA, OsUSP23, USP23,OsPUB49, PUB49, OsRLCK307, OsUSP38, USP38,  OsPUB49, PUB49,OsUSP19,OsPUB52, PUB52, OsRLCK280, OsUSP33, USP33,  OsPUB52, PUB52,OsRLCK361, OsUSP40, USP40,OsUSP11,OsUSP13,OsUSP12,OsRLCK105, OsUSP16, USP16,OsUSP26,OsUSP43,OsPUB56, PUB56, OsRLCK281, OsUSP34, USP34,  OsPUB56, PUB56,OsUSP25
50292	34294838	Yin M., Ma H., Wang M., Chu G., Liu Y., Xu C., Zhang X., Wang D., Chen S.	Transcriptome analysis of flowering regulation by sowing date in Japonica Rice (Oryza sativa L.).	Sci Rep	11(1)	15026	2021	GI,SE1,FKF1,FTL4,PPS,ELF3.2	OsGI, Gi, Os-GI,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, OsHd1,  Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,OsFbox609, Os_F0370, OsFKF1,  OsFBO10, FBO10,OsFT, osFT, FT-L 4, OsFTL4, FT-L4, FT-1, OsFT-1,OsWD40-55, OsCOP1, COP1, YEL, OsYEL, OsPPS, COP1-1, OsCOP1-1,  OsRING347, RING347,ELF3_chr.1, OsELF3.2, ELF3.2, OsELF3-2, ELF3-2, OsELF3b, ELF3b
50293	34215814	Zhao Y., Yin Z., Wang X., Jiang C., Aslam M.M., Gao F., Pan Y., Xie J., Zhu X., Dong L., Liu Y., Zhang H., Li J., Li Z.	Genetic basis and network underlying synergistic roots and shoots biomass accumulation revealed by genome-wide association studies in rice.	Sci Rep	11(1)	13769	2021	D35,GLR3.1,PTR9	d35, d35(t), dwf30, OsKOL2, KOL2, KO2, OsKO2, OSKO2, KO, CYP701A, CYP701A6, Os KO2, OsKOL2/CYP701A,OsGLR3.2, GLR3.2, OsGLR3.1, OsGLR4.1, GLR4.1,OsPTR9, OsNPF8.20, NPF8.20  
50294	34303193	Peng M., Gan F., Yang F., Pan C., Lin X., Fan X., Chen K., Gao P.	Nuclear factor OsNF-YB4 promotes flowering by negatively regulating the floral repressor gene Ghd7 in rice.	Biochem. Biophys. Res. Commun.	571	32-37	2021		
50295	33999128	Zou X., Liu L., Hu Z., Wang X., Zhu Y., Zhang J., Li X., Kang Z., Lin Y., Yin C.	Salt-induced inhibition of rice seminal root growth is mediated by ethylene-jasmonate interaction.	J. Exp. Bot.	72(15)	5656-5672	2021		
50296	33974693	Song H., Lin B., Huang Q., Sun L., Chen J., Hu L., Zhuo K., Liao J.	The Meloidogyne graminicola effector MgMO289 targets a novel copper metallochaperone to suppress immunity in rice.	J. Exp. Bot.	72(15)	5638-5655	2021		
50297	34367219	Yu J., Mao C., Zhong Q., Yao X., Li P., Liu C., Ming F.	OsNAC2 Is Involved in Multiple Hormonal Pathways to Mediate Germination of Rice Seeds and Establishment of Seedling.	Front Plant Sci	12	699303	2021	ERF93,SLC2,D35,ACO3,ACS1,NCED1,ABA8OX1,ABA1,TIL1	OsERF1, ERF1, OsERF#093, OsERF093, OsERF93, AP2/EREBP#168, AP2/EREBP168,OsSLC2, OsACO, ACO,d35, d35(t), dwf30, OsKOL2, KOL2, KO2, OsKO2, OSKO2, KO, CYP701A, CYP701A6, Os KO2, OsKOL2/CYP701A,OsACO3, ACO2, OsACO2,ACC1*, OsACS1, Os-ACS1, ACC1, OsACC1,OSNCED1, OsNCED-1, OsNCED3, OsNced3, NCED3, OsNCED9, NCED9,OsABA8OX1, CYP707A5, OsCYP707A5, ABA8ox1, OsABA8ox1, OsABA8'OH1, ABA8'OH1 ,OsABA1, Zep1, OsAba1, Aba2, OsAba2, OsZep1, Zep, OsZep, Aba1, OsABA2, Osaba1, OsZEP-1, OsZEP, OSZEP1, ZEP1, ZEP,NAC2, OsNAC2, ONAC004, ONAC4, ONAC034, ONAC34, ONAC058, ONAC58, OMTN2, Ostil1, OsNAC2/ONAC004, OsORE1.2, DLN113, OsDLN113
50298	34110093	Ye R., Wu Y., Gao Z., Chen H., Jia L., Li D., Li X., Qian Q., Qi Y.	primary root and root hair development regulation by OsAUX4 and its participation in the phosphate starvation response.	J Integr Plant Biol	63(8)	1555-1567	2021	RAU4	OsLAX4, OsRAU4, OsAUX4, LAX4, AUX4
50299	34216173	Ogasawara S., Ezaki M., Ishida R., Sueyoshi K., Saito S., Hiradate Y., Kudo T., Obara M., Kojima S., Uozumi N., Tanemura K., Hayakawa T.	Rice amino acid transporter-like?6 (OsATL6) is involved in amino acid homeostasis by modulating the vacuolar storage of glutamine in roots.	Plant J.	107(6)	1616-1630	2021		
50300	34299275	Jung S.E., Bang S.W., Kim S.H., Seo J.S., Yoon H.B., Kim Y.S., Kim J.K.	Overexpression of <i>OsERF83</i>, a Vascular Tissue-Specific Transcription Factor Gene, Confers drought tolerance in Rice.	Int J Mol Sci	22(14)		2021	PR1-73,RLCK330,TET13,PTR7,NPF8.17,LAC10,CAD8D,CSLE1,PR4D,_,_,WSI18,WAK89B,CYP76M10,TPS14,ERF83,CYP71Z4,KSL10,LAC17,_,CHIB1,HT,TPS3	OsPR1#073, OsPR1-73,OsLysM-RLK8, LysM-RLK8, OsRLCK330,OsSAP, SAP, OsTET13,OsPTR7, OsNPF8.1, NPF8.1, OsNPF8.10, NPF8.10,PTR, OsNPF8.17,OsLAC10,OsCAD8D,OsCslE1, OsCSLE1 ,OsPR4d,OsPR1b, PR1b,TLP, PR5, OsTLP, OsPR5,OsLEA14, OsLEA14a, OsLEA14b, wsi18, pwsi18, OsWsi18, OsLEA14/WSI18,OsWAK89b,OsCYP76M10, OsCYP76-10, CYP76-10, OsCYP71T9, CYP71T9,OsTPS14, TPS12, OsTPS12,OsERF#083, OsERF083, OsERF83, AP2/EREBP#163, AP2/EREBP163,Oscyp71Z4, OsCYP71Z2, CYP71Z2,OsKSL10, KS10, OsKS10, OsTPS33, TPS33, TPS21, OsTPS21,OsLAC17,OsEnS-64, PCC13-62, OsPCC13-62,Oschib1, chib1, PR-8, PR8, OsPR8, OsPR8b, PR8b,OsHT, OsLHT1, LHT1,OsTPS3, OsLIS, LIS, TPS22, OsTPS22
50301	34322729	Hsieh K.T., Chen Y.T., Hu T.J., Lin S.M., Hsieh C.H., Liu S.H., Shiue S.Y., Lo S.F., Wang I.W., Tseng C.S., Chen L.J.	Comparisons within the Rice GA 2-Oxidase Gene Family Revealed Three Dominant Paralogs and a Functional Attenuated Gene that Led to the Identification of Four Amino Acid Variants Associated with GA Deactivation Capability.	Rice (N Y)	14(1)	70	2021	GA2OX8,D18,SD1,GA2OX10,GA2OX9,GA2OX2,SBI,GA2OX3,GA2OX1,GA2OX7,GA2OX5,GA2OX6	OsGA2ox8,d18-h  (d18-I, d18h), dwf15, d25, d18, d18-k, d18-AD, d18-dy, OsGA3ox2, ga3ox2, OsGA3OX2, GA3OX2, OsGA3ox-2, GA3ox-2, GA3ox1,sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2, OsPHQ1, OsPHq1, PHq1,OsGA2ox10,OsGA2ox9, GA2ox7, 2-ODD35, Os2-ODD35, 2ODD35, Os2ODD35,OsGA2ox2, ga2ox 2, OsGA2ox-2,GA2OX4, OsGA2ox4, ga2ox 4, OsGA2ox-4, OsSBI,OsGA2ox3, ga2ox 3, OsGA2ox-3, GA2ox3, GA2ox-3, GA2ox4,OsGA2ox1, ga2ox-1, OsGA2ox-1, ga2ox, ga2ox 1, GA2ox1,OsGA2ox7,OsGA2ox5, 2-ODD32, Os2-ODD32, 2ODD32, Os2ODD32,OsGA2ox6
50302	34299202	Kampire M.G., Sanglou R.K., Wang H., Kazeem B.B., Wu J.L., Zhang X.	A Novel Allele Encoding 7-Hydroxymethyl Chlorophyll a Reductase Confers Bacterial Blight Resistance in Rice.	Int J Mol Sci	22(14)		2021	SPL-HM143	OsHCAR, HCAR
50303	34380741	Beans C.	Inner Workings: Keeping arsenic out of rice.	Proc. Natl. Acad. Sci. U.S.A.	118(33)		2021		
50304	34467412	Zhang F., Hu Z., Wu Z., Lu J., Shi Y., Xu J., Wang X., Wang J., Zhang F., Wang M., Shi X., Cui Y., Vera Cruz C., Zhuo D., Hu D., Li M., Wang W., Zhao X., Zheng T., Fu B., Ali J., Zhou Y., Li Z.	Reciprocal adaptation of rice and Xanthomonas oryzae pv. oryzae: cross-species 2D GWAS reveals the underlying genetics.	Plant Cell	33(8)	2538-2561	2021	SWEET13,EXS,XA3,XA22,_,XA40	OsSWEET13, Xa25(t), Xa25, OsMtN3, Xa25/SWEET13, OsSWEET13/XA25,OsEXS, OsRLCK354, RLCK354,Xa-3, Xa3 (Xa4b, Xa6, Xa9, Xa w), Xa3, Xaw, Xa6, Xa9, Xa4-b, XA26, Xa26(t), Xa26(t)*, Xa26, RKb, MRKb, MRKB, TRKb, Xa3/Xa26,Xa22, Xa22*, RXa20, Xa(t), Xa22(t),WAK3, OsWAK3,
50305	34245297	Huang G., Hu H., van de Meene A., Zhang J., Dong L., Zheng S., Zhang F., Betts N.S., Liang W., Bennett M.J., Persson S., Zhang D.	AUXIN RESPONSE FACTORS 6 and 17 control the flag leaf angle in rice by regulating secondary cell wall biosynthesis of lamina joints.	Plant Cell	33(9)	3120-3133	2021	ARF8,ARF6A,ARF17,ILA1,ARF6B	OsARF8, OsARF12, ARF12,OsARF6a, OsARF6, ARF6,OsARF17,OsILA1, OsACTPK4, ACTPK4, OsMAPKKK43, MAPKKK43,OsARF6b, OsARF25, ARF25
50306	34270775	Lee Y., Okita T.W., Szymanski D.B.	A co-fractionation mass spectrometry-based prediction of protein complex assemblies in the developing rice aleurone-subaleurone.	Plant Cell	33(9)	2965-2980	2021	TSN,RYMV1,RPN12,RPN9A,RPN9B,PKPBETA2,PKPA1,EIFISO4E,CS,GATB	Rp120, OsTSN,Rymv1, eIF(iso)4G, OsRYMV1, OseIF(iso)4G, eIFiso4G,OsRpn12, Rpn12,OsRpn9a, Rpn9a,OsRpn9b, Rpn9b, RPN9a,OsPKpb2, PKpb2, OsPKpbeta2, PKpbeta2, OsPK9, PK9,OsPKpa1, OsPK2, PK2,p28, eIFiso4E, OsEIFISO4E,OsCS,OsGatB, GatB
50307	34546380	Huang Z., Ying J., Peng L., Sun S., Huang C., Li C., Wang Z., He Y.	A genome-wide association study reveals that the cytochrome b5 involved in seed reserve mobilization during seed germination in rice.	Theor. Appl. Genet.	134(12)	4067-4076	2021		
50308	34539694	Habiba, Xu J., Gad A.G., Luo Y., Fan C., Uddin J.B.G., Ul Ain N., Huang C., Zhang Y., Miao Y., Zheng X.	Five <i>OsS40</i> Family Members Are Identified as Senescence-Related Genes in Rice by Reverse Genetics Approach.	Front Plant Sci	12	701529	2021	S40-6,S40-3,SWEET1B,S40-15,S40-5,S40-10,S40-12,SWEET13,S40-13,S40-2,S40-11,S40-9,S40-4,S40-14,SWEET1A,S40-8,SWEET4,S40-16,S40-7,S40-1 	OsS40-6,OsS40-3,OsSWEET1b, SWEET1b,OsS40-15,OsS40-5,OsS40-10,OsS40-12,OsSWEET13, Xa25(t), Xa25, OsMtN3, Xa25/SWEET13, OsSWEET13/XA25,OsS40-13,OsS40-2,OsS40-11,OsS40-9,OsS40-4,OsS40-14,OsSWEET1a, SWEET1a,OsS40-8,OsSWEET4,OsS40-16,OsS40-7,Dfu584, Duf584, OsS40-1
50309	34519039	Xu Y., Cai W., Chen X., Chen M., Liang W.	A small Rho GTPase OsRacB is required for pollen germination in rice.	Dev. Growth Differ.			2021		
50310	34524480	Zhang T., Zhang W., Li D., Zhou F., Chen X., Li C., Yu S., Brestic M., Liu Y., Yang X.	Glycinebetaine: a versatile protectant to improve rice performance against aluminium stress by regulating aluminium uptake and translocation.	Plant Cell Rep.	40(12)	2397-2407	2021		
50311	34273211	Chen X., Ma J., Wang X., Lu K., Liu Y., Zhang L., Peng J., Chen L., Yang M., Li Y., Cheng Z., Xiao S., Yu J., Zou S., Liang Y., Zhang M., Yang Y., Ding X., Dong H.	Functional modulation of an aquaporin to intensify photosynthesis and abrogate bacterial virulence in rice.	Plant J.	108(2)	330-346	2021		
50312	34530166	Han M.L., Lv Q.Y., Zhang J., Wang T., Zhang C.X., Tan R.J., Wang Y.L., Zhong L.Y., Gao Y.Q., Chao Z.F., Li Q.Q., Chen G.Y., Shi Z., Lin H.X., Chao D.Y.	Decreasing nitrogen assimilation under drought stress by suppressing DST-mediated activation of nitrate reductase 1.2 in rice.	Mol Plant	15(1)	167-178	2022		
50313	34685816	Imran S., Tsuchiya Y., Tran S.T.H., Katsuhara M.	Identification and Characterization of Rice <i>OsHKT1;3</i> Variants.	Plants (Basel)	10(10)		2021	HKT6	OsHKT6, OsHKT1;3, HKT1;3, OsHKT1;3_FL, OsHKT1;3_V1, OsHKT1;3_V2, OsHKT1;3_V3, OsHKT1;3_V4, OsHKT1;3_V5
50314	34411422	Liu T., Zeng D., Zheng Z., Lin Z., Xue Y., Li T., Xie X., Ma G., Liu Y.G., Zhu Q.	The ScCas9++ variant expands the CRISPR toolbox for genome editing in plants.	J Integr Plant Biol	63(9)	1611-1619	2021		
50315	34646287	Li R., Jiang M., Song Y., Zhang H.	Melatonin Alleviates Low-Temperature Stress <i>via</i> ABI5-Mediated Signals During Seed Germination in Rice (<i>Oryza sativa</i> L.).	Front Plant Sci	12	727596	2021	TDC1,ASMT1,ABI5,SBI,SNAT1,D1,NCED2,CYP99A3,SL,GA2OX1,GA2OX3,NCED1,AO3,GA2OX2,CATA	OsTDC, TDC, TDC2, OsTDC1, OsTDC4,ZRP4, OMT, ASMT, OsASMT, OsASMT1, ASMT1, OsASMT13, OsCOMT19, COMT19,OsABI5, OsbZIP10, OsABF1, OREB1, OsABI5-1, OsABI5-2, OsOREB1, OREB1 ,GA2OX4, OsGA2ox4, ga2ox 4, OsGA2ox-4, OsSBI,OsSNAT1, OsSNAT, SNAT, OsGNAT2, GNAT2,d1, GPA1, GA1, OsGA1, RGA1, dwf1, XA7, RGA, D1/RGA1, D89, TGW5, OsTGW5, SRG5, OsSRG5,OsNCED2, OsNced2, OsCCD4b, CCD4b, OsCCD4c, CCD4c,OsCYP99A3,OsSL, sl (spl1), sl*, sl, spl1, CYP71P1, Os CYP71P1, T5H, OsT5H, CYP71A1, OsCYP71A1, OsLLM1, LLM1, LLM1/OsSL, ELL1, OsELL1, ELL1/SL, OsT5H1,OsGA2ox1, ga2ox-1, OsGA2ox-1, ga2ox, ga2ox 1, GA2ox1,OsGA2ox3, ga2ox 3, OsGA2ox-3, GA2ox3, GA2ox-3, GA2ox4,OsNCED1, OsCCD4a, CCD4a,AO, OsAO, AAO, OsAAO, OsAO3, OsAAO1, AAO1,OsGA2ox2, ga2ox 2, OsGA2ox-2,CATA1, Cat A1*, OSCAT-A, Cat2, CatA1, CAT-A, OsCatA, OsCAT, CAT, catA, OSCATA, OsCATc, OsCATA, OsCAT1A, CAT1, OsCAT1, OsCATC, OsCAT2
50316	34579481	Fan T., Lv T., Xie C., Zhou Y., Tian C.	Genome-Wide Analysis of the <i>IQM</i> Gene Family in Rice (<i>Oryza sativa</i> L.).	Plants (Basel)	10(9)		2021	IQM7,IQM1,IQM2,IQM3,IQM4,IQM6,WRKY24,IQM8,IQM5	OsIQM7,OsIQM1,OsSTA91, OsIQM2,OsIQM3,OsIQM4,OsSTA242, OsIQM6,OsWRKY24,OsIQM8,OsIQM5
50317	34587220	Zhang X., Yin Y., Su Y., Jia Z., Jiang L., Lu Y., Zheng H., Peng J., Rao S., Wu G., Chen J., Yan F.	eIF4A, a target of siRNA derived from rice stripe virus, negatively regulates antiviral autophagy by interacting with ATG5 in Nicotiana benthamiana.	PLoS Pathog.	17(9)	e1009963	2021	EIF4A1,ATG5	eIF-4a, EIF4A, OseIF4A, eIF4A1, elF-4A, eIF4A-1, OsRH4,OsATG5, Atg5
50318	34685873	Park S.I., Park H.L., Bhoo S.H., Lee S.W., Cho M.H.	Biochemical and Molecular Characterization of the Rice Chalcone Isomerase Family.	Plants (Basel)	10(10)		2021	CHI2,CHI6,CHI3,CHI1,CHI7,CHI5,_	OsCHI2, OsCHI4,CHI, OsCHI6, OsCHIL1, CHIL1,gh1, GH1, OsGH1, OsCHI, Cfi, CHI, OsCHI3,OsCHI1,CHI, OsCHI, OsCHI7, OsCHIL2, CHIL2,OsCHI5,OsCHI2, CHI2
50319	34567053	Yuan X., Wang H., Bi Y., Yan Y., Gao Y., Xiong X., Wang J., Li D., Song F.	ONAC066, A Stress-Responsive NAC Transcription Activator, Positively Contributes to Rice Immunity Against <i>Magnaprothe oryzae</i> Through Modulating Expression of <i>OsWRKY62</i> and Three Cytochrome P450 Genes.	Front Plant Sci	12	749186	2021	WRKY62,WRKY45,NAC66,CYP71Z6,CYP81L6,KO4	OsWRKY62, OsWRKY62.1, OsWRKY62.2, XB10, OsWRKY62-1, OsWRKY62-2,OsWRKY45, OsWRKY45-1, OsWRKY45-2, WRKY45-1, WRKY45-2,ONAC066, ONAC66,Oscyp71Z6, OsCYP71Z5, CYP71Z5,OsCYP81L6,OsKO4, OsKOL4, KOS1, CYP701A8, OsCYP701A8, OsKO2, CYP701A8/OsKOL4
50320	34562665	Liu D., Zhao H., Xiao Y., Zhang G., Cao S., Yin W., Qian Y., Yin Y., Zhang J., Chen S., Chu C., Tong H.	A cryptic inhibitor of cytokinin phosphorelay controls rice grain size.	Mol Plant			2021		
50321	34552609	Chen Y., Zhu W., Shi S., Wu L., Du S., Jin L., Yang K., Zhao W., Yang J., Guo L., Wang Z., Zhang Y.	Use of RNAi With <i>OsMYB76R</i> as a Reporter for Candidate Genes Can Efficiently Create and Verify Gametophytic male sterility in Rice.	Front Plant Sci	12	728193	2021	PTD1	OsPTD1
50322	34620451	Wen J., Zeng Y., Chen Y., Fan F., Li S.	genic male sterility increases rice drought tolerance.	Plant Sci.	312	111057	2021		
50323	34618140	Qian D., Xiong S., Li M., Tian L., Qing Qu L.	OsFes1C, a potential nucleotide exchange factor for OsBiP1, is involved in the ER and salt stress responses.	Plant Physiol.	187(1)	396-408	2021	FES1B,SALT,PDIL2-3,BIP1,FES1C,FES1A,CNX	OsFes1B, Fes1B,salT*(sal1), SalT1*, sal1, Sal1, SALT, ML, SalT, OsSalT, OsJRL, JRL, Osl43, OsL43, OsMBL1, MBL1, OsJRL01, JRL01, OsJRL1, JRL1,PDIL2;3, OsPDIL2;3, PDIL 2-3, OsPDIL2-3, OsTrx27, Trx27,OsBiP1, BiP1, BiP, Bip3, OsBiP3, BIP1/OsBIP3, OsMed37_2, Med37_2 ,NEF, OsFes1C, Fes1C,OsFes1A, Fes1A,OsCNX, OsCNX1, CNX1
50324	34487253	Bai S., Hong J., Li L., Su S., Li Z., Wang W., Zhang F., Liang W., Zhang D.	Dissection of the Genetic Basis of Rice Panicle Architecture Using a Genome-wide Association Study.	Rice (N Y)	14(1)	77	2021	OFP21,HB22,DSM2,GRRP,SPL18,NAC56	OsOFP21, OsOFP10,OsHB22,OsDSM2, OsBCH1, BCH1, OsHYD3, HYD3,OsGRRP,OsSPL18,ONAC056, ONAC56, OsSWN5, SWN5
50325	34549425	Nagar P., Sharma N., Jain M., Sharma G., Prasad M., Mustafiz A.	OsPSKR15, a phytosulfokine receptor from rice enhances abscisic acid response and drought stress tolerance.	Physiol Plant			2021		
50326	34499670	Duy P.N., Lan D.T., Pham Thu H., Thi Thu HP., Nguyen Thanh H., Pham N.P., Auguy F., Bui Thi Thu H., Manh T.B., Cunnac S., Pham X.H.	Improved bacterial leaf blight disease resistance in the major elite Vietnamese rice cultivar TBR225 via editing of the OsSWEET14 promoter.	PLoS ONE	16(9)	e0255470	2021	XA41	OsSWEET14, SWEET14, Os11N3, Os-11N3, 11N3, Xa41(t), xa41, Os11N3/SWEET14, OsSWEET14/Os11N3
50327	34505938	Jiang X., Xu L., Gao Y., He M., Bu Q., Meng W.	Phylogeny and subcellular localization analyses reveal distinctions in monocot and eudicot class IV acyl-CoA-binding proteins.	Planta	254(4)	71	2021		
50328	34562652	Tian Q., Luan J., Guo C., Shi X., Deng P., Zhou Z., Zhang W., Shen L.	A bHLH protein, OsBIM1, positively regulates rice leaf angle by promoting brassinosteroid signaling.	Biochem. Biophys. Res. Commun.	578	129-135	2021	BHLH32,D2,ILI1	OsbHLH032, bHLH032, OsbHLH32, bHLH32, OsBIM1, BIM1,d2, dwf2, CYP90D2, D2/CYP90D2, OsD2, SMG11, OsSMG11, D2/SMG11, OsD2a, OsD2b,OsbHLH154, bHLH154, OsILI1
50329	34523389	Wang S., Zhang J., Gu M., Xu G.	OsWRKY108 is an integrative regulator of phosphorus homeostasis and leaf inclination in rice.	Plant Signal Behav	16(11)	1976545	2021		
50330	34570888	Shim S.H., Mahong B., Lee S.K., Kongdin M., Lee C., Kim Y.J., Qu G., Zhang D., Ketudat Cairns JR., Jeon J.S.	Rice beta-glucosidase Os12BGlu38 is Required for Synthesis of Intine Cell Wall and pollen Fertility.	J. Exp. Bot.			2021		
50331	34490900	Zhao W., Wang K., Chang Y., Zhang B., Li F., Meng Y., Li M., Zhao Q., An S.	OsHyPRP06/R3L1 regulates root system development and salt tolerance via apoplastic ROS homeostasis in rice (Oryza sativa L.).	Plant Cell Environ.			2021		
50332	34542722	Chen H.C., Chien T.C., Chen T.Y., Chiang M.H., Lai M.H., Chang M.C.	Overexpression of a Novel ERF-X-Type Transcription Factor, OsERF106MZ, Reduces Shoot Growth and Tolerance to Salinity Stress in Rice.	Rice (N Y)	14(1)	82	2021	ERF106,BOC1,ABI5,AKT1,HKT6	DERF7, OsDERF7, OsERF#106, OsERF106, AP2/EREBP#111, AP2/EREBP111, OsERF106MZ, ERF106MZ,OsSRO1c, SRO1c, OsBOC1,OsABI5, OsbZIP10, OsABF1, OREB1, OsABI5-1, OsABI5-2, OsOREB1, OREB1 ,OsAKT1, Os-AKT1,OsHKT6, OsHKT1;3, HKT1;3, OsHKT1;3_FL, OsHKT1;3_V1, OsHKT1;3_V2, OsHKT1;3_V3, OsHKT1;3_V4, OsHKT1;3_V5
50333	34630462	Andrew-Peter-Leon MT., Selvaraj R., Kumar K.K., Muthamilarasan M., Yasin J.K., Pillai M.A.	Loss of Function of <i>OsFBX267</i> and <i>OsGA20ox2</i> in Rice Promotes Early Maturing and Semi-Dwarfism in gamma-Irradiated IWP and Genome-Edited Pusa Basmati-1.	Front Plant Sci	12	714066	2021	SD1,FBX267,B3DNA	sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2, OsPHQ1, OsPHq1, PHq1,OsFBX267,OsSTA105, OsB3DNA
50334	34589107	Jiang Z., Chen Q., Chen L., Yang H., Zhu M., Ding Y., Li W., Liu Z., Jiang Y., Li G.	Efficiency of Sucrose to Starch Metabolism Is Related to the Initiation of Inferior Grain Filling in Large Panicle Rice.	Front Plant Sci	12	732867	2021	SUT2,OSK1,RSUS4,AGPL1,TPS8,SUT1	OsSUT2(t), SUT2M, OsSUT2, OsSUT2M, OsSUT5,osk1, SnRK1A, OsSnRK1A, OsSNRK1a, SnRK1A/OSK1, SnRK1a, OsSnRK1.2, SnRK1.2, OsSnRK1alphaA, SnRK1alphaA,SUS4, SS4, OsScS4, RSs4, RSus4, OsSUS4,OsAGPL1, OsAPL1, APL1, OsAGPL3, AGPL3, OsAGPSL3, AGPSL3,OsTPS8, OsTPS1, TPS1,OsSUT1, OsSUT2
50335	34476681	Valea I., Motegi A., Kawamura N., Kawamoto K., Miyao A., Ozawa R., Takabayashi J., Gomi K., Nemoto K., Nozawa A., Sawasaki T., Shinya T., Galis I., Miyamoto K., Nojiri H., Okada K.	The rice wound-inducible transcription factor RERJ1 sharing same signal transduction pathway with OsMYC2 is necessary for defense response to herbivory and bacterial blight.	Plant Mol. Biol.			2021		
50336	34498798	Kumar G., Kumar P., Kapoor R., Lore J.S., Bhatia D., Kumar A.	Characterization of evolutionarily distinct rice BAHD-Acyltransferases provides insight into their plausible role in rice susceptibility to Rhizoctonia solani.	Plant Genome	14(3)	e20140	2021		
50337	34427973	Ma G., Kuang Y., Lu Z., Li X., Xu Z., Ren B., Zhou X., Zhou H.	CRISPR/Sc++ -mediated genome editing in rice.	J Integr Plant Biol	63(9)	1606-1610	2021		
50338	34416090	Liu Y., Chen X., Xue S., Quan T., Cui D., Han L., Cong W., Li M., Yun D.J., Liu B., Xu Z.Y.	SET DOMAIN GROUP 721 protein functions in saline-alkaline stress tolerance in the model rice variety Kitaake.	Plant Biotechnol. J.	19(12)	2576-2588	2021	SET1,SKC1	OsSET1, SDG721, OsSDG721,OsHKT8, HKT8, Os-HKT1;5, OsHKT1;5, HKT1;5, SKC1, qSKC-1(t), OsSKC1
50339	34679679	Chen M., Fu Y., Mou Q., An J., Zhu X., Ahmed T., Zhang S., Basit F., Hu J., Guan Y.	Spermidine Induces Expression of Stress Associated Proteins (SAPs) Genes and Protects Rice Seed from Heat Stress-Induced Damage during Grain-Filling.	Antioxidants (Basel)	10(10)		2021	SAP11,SAP8,ZFP177,SAP1,SAP5,SAP4,SAP17,SAP6	OsDOG, OsSAP11, DOG,Osi-SAP8, OsiSAP8, OsSAP8, OsSAP1, SAP1,OsSAP9, SAP9, ZFP33,Osi-SAP1, ISAP1, OsiSAP1, OSISAP1, OsSAP1,OsSAP5,OsSAP4,OsSAP17,OsSAP6
50340	34416068	Wang Z., Wei K., Xiong M., Wang J.D., Zhang C.Q., Fan X.L., Huang L.C., Zhao D.S., Liu Q.Q., Li Q.F.	Glucan, Water-Dikinase 1 (GWD1), an ideal biotechnological target for potential improving yield and quality in rice.	Plant Biotechnol. J.	19(12)	2606-2618	2021	GWD1,GABA-T	OsGWD1,Osl2, l2, OsGABA-T
50341	34685853	Nguyen H.T.T., Das Bhowmik S., Long H., Cheng Y., Mundree S., Hoang L.T.M.	Rapid Accumulation of Proline Enhances Salinity Tolerance in Australian Wild Rice <i>Oryza australiensis</i> Domin.	Plants (Basel)	10(10)		2021	P5CR,PRODH,ALDH18B2,P5CS	OsP5CR,OsProDH, OsPDH, PDH,P5CS2, OsP5CS2, OsALDH18B2 ,OsP5CS, P5CS1, OsP5CS1, OsALDH18B1, ALDH18B1, OsP5CS-1, P5CS-1
50342	34531469	Wang H.L., Xu C.L., Chen C., Ding S.W., Li J.Y., Yang S.H., Xie H.	A novel ATPase gene, Ab-atps, plays an important role in the interaction of rice and white tip nematode, Aphelenchoides besseyi.	Sci Rep	11(1)	18521	2021	_	OsLysM-RLK4, LysM-RLK4, OsRLK3
50343	34560901	Sinaga D.S., Ho S.L., Lu C.A., Yu S.M., Huang L.F.	Knockdown expression of a MYB-related transcription factor gene, OsMYBS2, enhances production of recombinant proteins in rice suspension cells.	Plant Methods	17(1)	99	2021	MYBS2,AMY3D	OsMYBS2,Amy3D/E*(RAmy3D/E), alpha Amy3, AmyII-4, AMY1.3, Amy3D, Amy3D/E*, RAmy3D/E, Amy3D_E, Amy8, aAmy3, RAmy3D, OsAmy3D, alphaAmy3, OsRamy3D
50344	34575968	Xu R., Pan R., Zhang Y., Feng Y., Nath U.K., Gan Y., Shi C., Akhter D.	RNA-Seq-Based Profiling of <i>pl</i> Mutant Reveals Transcriptional Regulation of Anthocyanin Biosynthesis in Rice (<i>Oryza sativa</i> L.).	Int J Mol Sci	22(18)		2021	4CL5,BHLH7,PAL,2R_MYB76,_,PL,C4H2,WD40-190,_,DPF,PAL1,2ODD2,PAL1	Os4CL5, 4CL3, Os4CL3,OsbHLH007, bHLH007,OsPAL, OsPAL08, PAL2, GP-28, GP28, PAL08, OsPAL2, OsPAL8, PAL8,Os2R_MYB76,OsPAL07, OsPAL, PAL07, OsPAL6, PAL6, PAL1, OsPAL7, PAL7,OsMYB55, OsMYB-2, MYB55, MYB-2, OsPL, Os2R_MYB60, 2R_MYB60,OsC4H, OsC4HL, C4H, OsC4H2,OsWD40-190,,OsbHLH025, bHLH025, bHLH25,OsPAL, Pal1*, Pal1, PAL, Pal_1, PalI, PAL2, OsPAL01, PAL01, OSPAL, CP-1, GP-1, OsPAL1, PAL3, OsPAL3,FLS, 2-ODD2, Os2-ODD2, Os2ODD2, OsF3H, F3H, F3H2, OsF3H2, OsF3H03g, F3H03g, OsSAH1, SAH1, OsF3H1, F3H1,OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6
50345	34584121	Cu S.T., Warnock N.I., Pasuquin J., Dingkuhn M., Stangoulis J.	A high-resolution genome-wide association study of the grain ionome and agronomic traits in rice Oryza sativa subsp. indica.	Sci Rep	11(1)	19230	2021	RSUS1,NAS3,WX1	sus1, RSus1(t), SUS1, SS2, OsScS2, RSs2, RSus1, SuSy1, OsSUS1, RSS2, RSus2, OsRSUS1,OsNAS3,wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx
50346	34743920	Marwein R., Singh S., Maharana J., Kumar S., Arunkumar K.P., Velmurugan N., Chikkaputtaiah C.	Transcriptome-wide analysis of North-East Indian rice cultivars in response to Bipolaris oryzae infection revealed the importance of early response to the pathogen in suppressing the disease progression.	Gene	809	146049	2022		
50347	34675955	Lin W., Wang Y., Liu X., Shang J.X., Zhao L.	OsWAK112, A Wall-Associated Kinase, Negatively Regulates Salt Stress Responses by Inhibiting Ethylene Production.	Front Plant Sci	12	751965	2021	SAMS1,WAK112,_,SAMS2	OsSAMS1, OS-SAMS1, OsSAMS, SAM, SAMS,OsWAK112, OsWAK112d ,OsSAMS3, OsSAMS1, SAMS3, SAMS1, SAM2, SAM1,OsSAM2, SAM2, OsSAMS2, OS-SAMS2
50348	34291261	Hamzelou S., Melino V.J., Plett D.C., Kamath K.S., Nawrocki A., Larsen M.R., Atwell B.J., Haynes P.A.	The phosphoproteome of rice leaves responds to water and nitrogen supply.	Mol Omics	17(5)	706-718	2021		
50349	34685986	Kim S.I., Lee K.H., Kwak J.S., Kwon D.H., Song J.T., Seo H.S.	Overexpression of Rice Os<i>S1Fa1</i> Gene Confers Drought Tolerance in Arabidopsis.	Plants (Basel)	10(10)		2021	S1FA1	OsS1Fa1
50350	34644527	Shi J., Zhao B., Zheng S., Zhang X., Wang X., Dong W., Xie Q., Wang G., Xiao Y., Chen F., Yu N., Wang E.	A phosphate starvation response-centered network regulates mycorrhizal symbiosis.	Cell	184(22)	5527-5540.e18	2021		
50351	34561955	Liu Z., Mei E., Tian X., He M., Tang J., Xu M., Liu J., Song L., Li X., Wang Z., Guan Q., Xu Q., Bu Q.	OsMKKK70 regulates grain size and leaf angle in rice through the OsMKK4-OsMAPK6-OsWRKY53 signaling pathway.	J Integr Plant Biol	63(12)	2043-2057	2021		
50352	34679169	Singh H., Singh Z., Zhu T., Xu X., Waghmode B., Garg T., Yadav S., Sircar D., De Smet I., Yadav S.R.	Auxin-Responsive (phospho)proteome Analysis Reveals Key Biological Processes and Signaling Associated with Shoot-Borne crown root Development in Rice.	Plant Cell Physiol.			2021		
50353	34655590	Shalmani A., Huang Y.B., Chen Y.B., Muhammad I., Li B.B., Ullah U., Jing X.Q., Bhanbhro N., Liu W.T., Li W.Q., Chen K.M.	The highly interactive BTB domain targeting other functional domains to diversify the function of BTB proteins in rice growth and development.	Int. J. Biol. Macromol.	192	1311-1324	2021		
50354	34608958	Takamura N., Yamazaki A., Sakuma N., Hirose S., Sakai M., Takani Y., Yamashita S., Oshima M., Kuroki M., Tozawa Y.	Catalytic promiscuity of rice 2-oxoglutarate/Fe(II)-dependent dioxygenases supports xenobiotic metabolism.	Plant Physiol.	187(2)	816-828	2021		
50355	34733300	Kansal S., Panwar V., Mutum R.D., Raghuvanshi S.	Investigations on Regulation of MicroRNAs in Rice Reveal [Ca2+]cyt Signal Transduction Regulated MicroRNAs.	Front Plant Sci	12	720009	2021	MIR160F,CAMTA4,MIR166G,MIR1425,MIR5083,MIR167H,miR159B,MIR168A,CAMTA6,MIR156A,MIR5788	miR160f, osa-miR160f, osa-MIR160f, osa-miR160f-3p osa-miR160f-5p,OsCAMTA4, OsCAMTA6, CAMTA6,miR166g, osa-miR166gosa-miR166g-3p osa-miR166g-5p,OsmiR1425, miR1425, osa-miR1425, osa-MIR1425, osa-miR1425-3p, osa-miR1425-5p,miR5083, osa-miR5083, osa-MIR5083,miR167h, osa-miR167h, osa-MIR167hosa-miR167h-3p osa-miR167h-5p,OsmiR159b, osa-MIR159b,miR168a, osa-miR168a, osa-MIR168a osa-miR168a-3p osa-miR168a-5p, OsMIR168a,OsCAMTA6, OsCAMTA3, CAMTA3,miR156a, OsmiR156a, osmiR156a, osa-miR156a, osa-MIR156a,miR5788, osa-miR5788, osa-MIR5788, NolmiR-3
50356	34608238	Abdullah-Zawawi MR., Ahmad-Nizammuddin NF., Govender N., Harun S., Mohd-Assaad N., Mohamed-Hussein ZA.	Comparative genome-wide analysis of WRKY, MADS-box and MYB transcription factor families in Arabidopsis and rice.	Sci Rep	11(1)	19678	2021	BIP133,WRKY119,WRKY58,WRKY87,WRKY22,WRKY32,MADS68,CEF1,2R_MYB49,WRKY13,WRKY72,MYB46,RS2,MS188,WRKY89,WRKY17,GL1D,MYB19 ,WRKY23,MYB50,_,_	OsBIP133, OsMYB87, MYB87 ,OsWRKY119,OsWRKY58,OsWRKY87, OsSUSIBA2-like,OsWRKY22,OsWRKY32,OsMADS68,OsMYB103, OsMYB103L, CEF1/OsMYB103L, MYB103, MYB103L, OsMYB93, MYB93, OsFC9, FC9, Os2R_MYB74, 2R_MYB74,OsMYB58, MYB58, Os2R_MYB49,OsWRKY13,OsWRKY72, WRKY-72,OsMYB46, OsMYB122, MYB122, Os2R_MYB96, 2R_MYB96 ,OsMYB91, MYB91, OsRS2, OsMYB125, MYB125 ,OsMYB80, MYB80, OsMS188, Os2R_MYB44, 2R_MYB44, OsMYB103/OsMYB80/OsMS188/BM1, OsMYB103, MYB103,OsWRKY89,OsWRKY17,OsMyb3, OSMYB3, MYB3, OsGL1D, OsMYB46, MYB46, Kala3, OsKala3, SMG3, OsSMG3, Os2R_MYB39, 2R_MYB39,R2R3-MYB, OsMYB19, Os2R_MYB16, 2R_MYB16 ,OsWRKY23,OsMYB50 ,OsMyb4, OSMYB4, MYB4, OsEnS-11, OsGL1C, GL1C, OsMYB13, MYB13, Os2R_MYB11, 2R_MYB11 ,OsMyb7, Myb7, OsMYB102, MYB102, Os2R_MYB71, 2R_MYB71
50357	34625959	Upadhyaya G., Das A., Ray S.	A rice R2R3-MYB (OsC1) transcriptional regulator improves oxidative stress tolerance by modulating anthocyanin biosynthesis.	Physiol Plant	173(4)	2334-2349	2021		
50358	34693475	Tang L., Dong J., Tan L., Ji Z., Li Y., Sun Y., Chen C., Lv Q., Mao B., Hu Y., Zhao B.	Overexpression of OsLCT2, a Low-Affinity cation transporter Gene, Reduces Cadmium Accumulation in Shoots and Grains of Rice.	Rice (N Y)	14(1)	89	2021	ZIP6,_,IRT2,LCT2,ZIP5,IRT1	OsZIP6,OsZIP9, ZIP9,OsIRT2, OsIRT1, OsZIP15, ZIP15,OsLCT2,OsZIP5, OsZIP8, ZIP8, OsZIP9,OsIRT1, ZIP10, OsZIP10, OsZIP12, ZIP12
50359	34538009	Cao L., Tian J., Liu Y., Chen X., Li S., Persson S., Lu D., Chen M., Luo Z., Zhang D., Yuan Z.	Ectopic expression of OsJAZ6, which interacts with OsJAZ1, alters JA signaling and spikelet development in rice.	Plant J.	108(4)	1083-1096	2021		
50360	34829563	Park J.R., Jan R., Park S.G., Handoyo T., Lee G.S., Yun S., Jang Y.H., Du X.X., Lee T., Kwon Y.S., Kim D.H., Seok Y.M., Bae J.S., Kim K.M.	The Quantitative Trait Loci Mapping of Rice Plant and the Components of Its Extract Confirmed the Anti-Inflammatory and Platelet Aggregation Effects In Vitro and In Vivo.	Antioxidants (Basel)	10(11)		2021	_	CM, OsCM
50361	34252176	Yu E., Yamaji N., Mao C., Wang H., Ma J.F.	Lateral roots but not root hairs contribute to high uptake of manganese and cadmium in rice.	J. Exp. Bot.	72(20)	7219-7228	2021		
50362	34664356	Zhao H., Li Z., Wang Y., Wang J., Xiao M., Liu H., Quan R., Zhang H., Huang R., Zhu L., Zhang Z.	Cellulose synthase-like protein OsCSLD4 plays an important role in the response of rice to salt stress by mediating abscisic acid biosynthesis to regulate osmotic stress tolerance.	Plant Biotechnol. J.			2021		
50363	34663209	Zhang Q., Song T., Guan C., Gao Y., Ma J., Gu X., Qi Z., Wang X., Zhu Z.	OsANN4 modulates ROS production and mediates Ca2+ influx in response to ABA.	BMC Plant Biol.	21(1)	474	2021	CDPK24,ANN3	OsCDPK24, OsCPK24, OsCDPK14, CPK24,OsANN3, OsANN4, ANN4
50364	34680989	Kim S.Y., Kim J.S., Cho W., Jun K.M., Du X., Kim K.D., Kim Y.K., Lee G.S.	A cold-shock protein from the South Pole-Dwelling Soil Bacterium <i>Arthrobacter</i> sp. Confers cold tolerance to Rice.	Genes (Basel)	12(10)		2021		
50365	34582620	Cao W., Zhang H., Zhou Y., Zhao J., Lu S., Wang X., Chen X., Yuan L., Guan H., Wang G., Shen W., De Vleesschauwer D., Li Z., Shi X., Gu J., Guo M., Feng Z., Chen Z., Zhang Y., Pan X., Liu W., Liang G., Yan C., Hu K., Liu Q., Zuo S.	Suppressing chlorophyll degradation by silencing OsNYC3 improves rice resistance to Rhizoctonia solani, the causal agent of sheath blight.	Plant Biotechnol. J.	20(2)	335-349	2022	NYC3,RBOHA,OSM1,YGL10,YL1,SGR,CHT3,OXO4,_,ACS2	nyc3, OsNYC3, PPH,rbohA, OsrbohA, Os rbohA, OsRbohA, OsNox2, Nox2, OsRboh2, Rboh2,OsOSM1,CAO, OsCAO, CAO1, OsCAO1, Oslls1, Lls1, DVR, PGL,MTC, OsMTC, YGL8, OsYGL8, OsCRD1, CRD1, OsCRD, CRD, YL-1, PNZIP, OsPNZIP,sgr(t), sgr, OsSGR, OsSgr, SGR1, OsSGR1,Cht3*, Cht3, Cht-3, CH6, OsChia1c, CHI7, OsCHI11, CHI11, OsPR3, PR3,OsOxO4, OsGLP3-6, GLP3-6, OsCDP3.9, CDP3.9,OsNR1, NR1, nia1, OsNIA1, NIA1, OsNIA2, NIA2,OsACS2, Os-ACS2
50366	34639232	Huang Y., Zhou J., Li Y., Quan R., Wang J., Huang R., Qin H.	Salt Stress Promotes Abscisic Acid Accumulation to Affect Cell Proliferation and Expansion of Primary Roots in Rice.	Int J Mol Sci	22(19)		2021	SAPK10,EXPA25,EXPA10,EXPA4,EXPA18,PP2C53	OsSAPK10, OsSnRK2.10, SnRK2.10,OsEXPA25, OsEXP25, osaEXPa1.6,OsEXPA10, OsEXP10, osaEXPa1.28,OsEXP4 (Os-EXP4), OsEXPA4, OsEXP4, Os-EXP4, OsaEXPa1.22,OsEXPA18, OsEXP18, osaEXPa1.3,OsPP2C53, OsPP81, OsABIL2, ABIL2
50367	34628712	An L., Zhang S., Guo P., Song L., Xie C., Guo H., Fang R., Jia Y.	RIR1 represses plant immunity by interacting with mitochondrial complex I subunit in rice.	Mol. Plant Pathol.	23(1)	92-103	2022	WRKY45,NUO,RIR1,PR1A,AOS2,CHT1,_	OsWRKY45, OsWRKY45-1, OsWRKY45-2, WRKY45-1, WRKY45-2,OsNUO,OsLRR-RLK2, LRR-RLK2, OsRIR1,OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1, OsPR1b, PR1alpha, OsPR1alpha,OsAOS2, CYP74A2, OsAOS, OsAOS1,Cht1*(Chi1), Ch16, Cht1, CHT-1, CH16, RC24, OsChia1a, OsChia1, Chi1, Cht1*, Chi-1, Cht-1, Cht1, RCC1, OsCht-1, PR3, OsPR3,Lox2:Os:1, OsLOX9, LOX9, OsLOX8, LOX8, OsLOX2, LOX2, OsRLL, OsHI-LOX, HI-LOX, RLL2 LOX, RLL2, Lox2osPil, OsLOX2;1, LOX2;1, OsLOX1, OsLOX7, LOX7
50368	34689213	Yuan H., Gao P., Hu X., Yuan M., Xu Z., Jin M., Song W., Zhan S., Zhu X., Tu B., Li T., Wang Y., Ma B., Qin P., Chen W., Li S.	Fine mapping and candidate gene analysis of qGSN5, a novel quantitative trait locus coordinating grain size and grain number in rice.	Theor. Appl. Genet.	135(1)	51-64	2022	LK3,GSN5	lk3(t), lk3(t)*, SG3, GS3, SG3-GS3, OsGW3, OsGS3, RGG3/GS3/Mi/OsGGC1, RGG3, Mi, OsGGC1, GGC1, OsSYL3, SYL3, TT2, OsTT2,qGSN5, OsGSN5
50369	34555252	Zhou J., Zhang R., Jia X., Tang X., Guo Y., Yang H., Zheng X., Qian Q., Qi Y., Zhang Y.	CRISPR-Cas9 mediated OsMIR168a knockout reveals its pleiotropy in rice.	Plant Biotechnol. J.	20(2)	310-322	2022	AGO18,AGO1D,MIR162A,HAP2I,MET1B,AGO1A,GRF6,AGO1B,MIR168A	OsAGO18,OsAGO1d, AGO1d,miR162a, osa-miR162a, osa-MIR162a, OsMIR162a,OsHAP2I, NF-YA, CBF-B, NF-YA8, OsNF-YA8, OsEnS-136, NFYA8,OsMET1b, OsMET1-2, MET1b, MET1,OsAGO1a, AGO1a, AGO10, AGO1-1 ,OsGRF6,OsAGO1b, AGO1b, AGO1-2 ,miR168a, osa-miR168a, osa-MIR168a osa-miR168a-3p osa-miR168a-5p, OsMIR168a
50370	34685953	Du X.X., Park J.R., Wang X.H., Jang Y.H., Kim E.G., Lee G.S., Kim K.M.	Applying HPLC to Screening QTLs for BLB Resistance in Rice.	Plants (Basel)	10(10)		2021	WRKY31	OsWRKY31
50371	34769121	Da Costa MVJ., Ramegowda V., Sreeman S., Nataraja K.N.	Targeted Phytohormone Profiling Identifies Potential Regulators of spikelet sterility in Rice under Combined Drought and Heat Stress.	Int J Mol Sci	22(21)		2021	YUCCA1,ABA1,ACO2,AOC,JMT1,OPR1,NCED1,ACS1,FIB	OsYUCCA1, OsYUC1, YUC1,OsABA1, Zep1, OsAba1, Aba2, OsAba2, OsZep1, Zep, OsZep, Aba1, OsABA2, Osaba1, OsZEP-1, OsZEP, OSZEP1, ZEP1, ZEP,OsACO2, OsACO1,OsAOC, AOC1, OsAOC1, HB, CPM2, OsAOC4, AOC4,OsJMT1, JAMT1, OsJAMT1,OsOPR1, OsOPR2, OsOPR11, OsOPR06-6, OPDAR1, OsOPR, OPDAR,OSNCED1, OsNCED-1, OsNCED3, OsNced3, NCED3, OsNCED9, NCED9,ACC1*, OsACS1, Os-ACS1, ACC1, OsACC1,fib, OsFIB, OsTAR2, TAR2, TSG1, OsTSG1, OsTAA1, TAA1
50372	34768797	Jia Y., Li Q., Li Y., Zhai W., Jiang G., Li C.	Inducible Enrichment of Osa-miR1432 Confers Rice Bacterial Blight Resistance through Suppressing <i>OsCaML2</i>.	Int J Mol Sci	22(21)		2021	CSN6,CaML2,HPGT3,PR10A,PR1B,PR1A,MIR1432,CAS	OsCSN6,OsCaML2,OsHPGT3,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1, OsPR1a, PR1a,OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1, OsPR1b, PR1alpha, OsPR1alpha,miR1432, osa-miR1432, osa-miR1432-5p, osa-MIR1432,OsCAS, OAS-TL
50373	34674053	Li Y., Zheng Y.P., Zhou X.H., Yang X.M., He X.R., Feng Q., Zhu Y., Li G.B., Wang H., Zhao J.H., Hu X.H., Pu M., Zhou S.X., Ji Y.P., Zhao Z.X., Zhang J.W., Huang Y.Y., Fan J., Zhang L.L., Wang W.M.	Rice miR1432 Fine-Tunes the Balance of Yield and blast disease Resistance via Different Modules.	Rice (N Y)	14(1)	87	2021	ACOT ,MIR1432,EFH1	OsACOT ,miR1432, osa-miR1432, osa-miR1432-5p, osa-MIR1432,OsEFH1
50374	34659326	Zhu C.L., Xing B., Teng S.Z., Deng C., Shen Z.Y., Ai P.F., Lu T.G., Zhang S.W., Zhang Z.G.	OsRELA Regulates Leaf Inclination by Repressing the Transcriptional Activity of OsLIC in Rice.	Front Plant Sci	12	760041	2021	EXPA5,EXPB11,EXPB6,ILI1,CESA6,OFP14,EP2,CSLF6,IIP3,GATL6,MIR408,PGSIP-A1,BU1, LIC,GT43I,ILI5,UGLCAE2,IRX10	OsEXPA5, OsEXP5, osaEXPa1.20,OsEXPB11, osaEXPb1.20,OsEXPB6, osaEXPb1.8, EXPb1.8,OsbHLH154, bHLH154, OsILI1,OsCesA6, OsCESA6, OS_CESA06,OsOFP14, OsOFP21,ep2, EP2/DEP2/SRS1, SRS1/DEP2, DEP2, SRS1, OsSRS1, CL7(t), OsRELA, RELA,OsCslF6, OsCSLF6, OsCLD3, CLD3,OsIIP3,OsGATL6, OsGT8, GT8,miR408, osa-MIR408osa-miR408 osa-miR408-3p osa-miR408-5p, OsMIR408 ,OsPGSIP-A1, OsGUX1, GUX1, OsGUX1L,ILI4, OsILI4 , OsBU1, BU1/ILI4, OsbHLH172, bHLH172,OsC3H46, C3H46, OsLIC, OsFLA6, FLA6,OsGT43I, OsGT43B, GT43B,ILI5, OsILI5, PGL2, OsPGL2, Os170, OsBUL1, BUL1, ILI5/PGL2, OsbHLH170, bHLH170,OsUGlcAE2, OsUGA4E, UGA4E,OsIRX10, OsIRX10L, IRX10L
50375	34694441	Zhu M., He Y., Zhu M., Ahmad A., Xu S., He Z., Jiang S., Huang J., Li Z., Liu S., Hou X., Zhang Z.	ipa1 improves rice drought tolerance at seedling stage mainly through activating abscisic acid pathway.	Plant Cell Rep.			2021		
50376	34763872	Yu M., Cao C., Yin X., Liu X., Yang D., Gong C., Wang H., Wu Y.	The rice phosphoinositide-specific phospholipase C3 is involved in responses to osmotic stresses via modulating ROS homeostasis.	Plant Sci.	313	111087	2021		
50377	34543503	Borna R.S., Murchie E.H., Pyke K.A., Roberts J.A., Gonz?lez-Carranza ZH.	The rice EP3 and OsFBK1 E3 ligases alter plant architecture and flower development, and affect transcript accumulation of microRNA pathway genes and their targets.	Plant Biotechnol. J.	20(2)	297-309	2022	EP3,DDL,CRD1,DU13,DCL1,WAF1,NAM,FBOX33,Y37	EP3/LP, LP, OsLP, OsFbox076, OsFbox76, Os_F0106, OsEP3,  OsFBK5, FBK5,OsDDL,CRD1/OsHST, OsCRD1, OsHST, HST,OsDLN175, DLN175, OsSE, SE, OsDU13, ZOS6-09, OsZOS6-09,Dcl1, OsDCL1, osDCL1, Os-DCL1, OsDCL1a, DCL1a,OsWAF1, waf1, waf1-1, waf1-2, HEN1, OsHEN1,OsNAM, OMTN5, ONAC092, ONAC92, NAC92, CUC2, OsNAM/CUC2, DLN165, OsDLN165, OsCUC1, CUC1, OsNAM/ OMTN5, OsNAM1, NAM1,OsFbox033, OsFbox33, Fbox33, Os_F0114, OsFBK1, FBK1 ,  OsFBK1, FBK1,NAC11, ONAC011, ONAC11, OMTN4, OsY37, OsY37N, OsY37I, OsNAC1, DLN172, OsDLN172, OsNAC092, NAC092, OsNAC92, NAC92
50378	34656861	Yan L., Baoxiang W., Jingfang L., Zhiguang S., Ming C., Yungao X., Bo X., Bo Y., Jian L., Jinbo L., Tingmu C., Zhaowei F., Baiguan L., Dayong X., Bello B.K.	A novel SAPK10-WRKY87-ABF1 biological pathway synergistically enhance abiotic stress tolerance in transgenic rice (Oryza sativa).	Plant Physiol. Biochem.	168	252-262	2021		
50379	34615467	Chen B., Sun Y., Tian Z., Fu G., Pei X., Pan Z., Nazir M.F., Song S., Li H., Wang X., Qin N., Shang J., Miao Y., He S., Du X.	GhGASA10-1 promotes the cell elongation in fiber development through the phytohormones IAA-induced.	BMC Plant Biol.	21(1)	448	2021		
50380	34679114	Shanmugam S., Boyett V.A., Khodakovskaya M.	Enhancement of drought tolerance in rice by silencing of the OsSYT-5 gene.	PLoS ONE	16(10)	e0258171	2021	NTMC2T4.1,ABA1,GMST1,WRKY45,HSFA1,CDPK21,PIP1A,SIK1,CAX1A,_,SKC1,PIP1;2,AKT1,TPC1	OsNTMC2T4.1, OsSYT-5, SYT-5, SYT5, OsSYT5, OsC2DP62, C2DP62,OsABA1, Zep1, OsAba1, Aba2, OsAba2, OsZep1, Zep, OsZep, Aba1, OsABA2, Osaba1, OsZEP-1, OsZEP, OSZEP1, ZEP1, ZEP,OsGMST1, OspGlcT2, pGlcT2,OsWRKY45, OsWRKY45-1, OsWRKY45-2, WRKY45-1, WRKY45-2,OsHsfA1, HsfA1, OsHSF13, HSF13, OsHsf-13, HSF3, rHsf3, OsHsfA1a,OsCDPK21, OsCPK21, CPK21, CPK-21,OsPIP1a, OsPIP1;1, PIP1a, RWC-1, PIP1-1, RWC1, OsPIP1-1, PIP1;1, PIP1-5,OsSIK1, OsER2, ER2, OsERL, ERL,OsCAX1a, CAX1a, CAX1, OsCAX1, OsNCX2, OsNCX2.1, OsNCX2.2, NCX2, OsVCAX1a,OsHSP70, hsp70,OsHKT8, HKT8, Os-HKT1;5, OsHKT1;5, HKT1;5, SKC1, qSKC-1(t), OsSKC1,OsPIP1;2, PIP1-2, OsPIP1-2,OsAKT1, Os-AKT1,OsTPC1, Tpc1, OsCC1, OsCL1 pore
50381	34598671	Wu Q., Han T., Yang L., Wang Q., Zhao Y., Jiang D., Ruan X.	The essential roles of OsFtsH2 in developing the chloroplast of rice.	BMC Plant Biol.	21(1)	445	2021	FTSH9	OsFtsH9, FtsH9, OsFtsH2, FtsH2
50382	34694678	Zeng X., Jiang J., Wang F., Liu W., Zhang S., Du J., Yang C.	Rice OsClo5, a caleosin protein, negatively regulates cold tolerance through the jasmonate signalling pathway.	Plant Biol (Stuttg)	24(1)	52-61	2022		
50383	34715569	Gao H., Huang H., Lu K., Wang C., Liu X., Song Z., Zhou H., Yang L., Li B., Yu C., Zhang H.	OsCYP714D1 improves plant growth and salt tolerance through regulating gibberellin and ion homeostasis in transgenic poplar.	Plant Physiol. Biochem.	168	447-456	2021		
50384	34696828	Tian Q., Luan J., Guo C., Shi X., Deng P., Zhou Z., Zhang W., Shen L.	Corrigendum to "A bHLH protein, OsBIM1, positively regulates rice leaf angle by promoting brassinosteroid signaling".	Biochem. Biophys. Res. Commun.	581	120	2021		
50385	34704216	Islam M.Q., Hasan M.N., Hoque H., Jewel N.A., Bhuiyan M.F.H., Prodhan S.H.	Characterization of transcription factor MYB59 and expression profiling in response to low K+ and NO3- in indica rice (Oryza sativa L.).	J Genet Eng Biotechnol	19(1)	167	2021	MYB48	OsMYB48, OsMYB48-1, OsMYB48-2, OsMYB59, MYB59, Os2R_MYB19, 2R_MYB19 
50386	34550608	Deng S., Li J., Du Z., Wu Z., Yang J., Cai H., Wu G., Xu F., Huang Y., Wang S., Wang C.	Rice acid phosphatase 1 regulates Pi stress adaptation by maintaining intracellular Pi homeostasis.	Plant Cell Environ.	45(1)	191-205	2022		
50387	34777449	Kim D.H., Yang J., Ha S.H., Kim J.K., Lee J.Y., Lim S.H.	An OsKala3, R2R3 MYB TF, Is a Common Key Player for Black Rice Pericarp as Main Partner of an OsKala4, bHLH TF.	Front Plant Sci	12	765049	2021	TTG1A,F3H1,ANS,RD,B2,_,F3'H,CHI3,CHS,GL1D,C	OsWD40-50, WD40-50, OsTTG1A, OsTTG1, TTG1 ,OsF3H-1, F3H-1, OsF3H1, OsF3H, F3H, OsF3H3, F3H3,ANS, OsANS1, ANS1, LDOX, LDOX1, OsLDOX, OsLDOX1,Rd, DFR, OsDFR, OS-DFR, OsDFR1, DFR1, DFR-1,OsbHLH016, Kala4, OsKala4, OSB2, OsB2,OsbHLH012, bHLH012, bHLH12, OsRb, Rb, Rb1, OsRb1,OsF3'H, OsCYP75B3, CYP75B3, OsF3'H10, F3'H10, OsCYP71P3, CYP71P3,gh1, GH1, OsGH1, OsCHI, Cfi, CHI, OsCHI3,CHS*, Oschs, chs, chas, OsCHS, OsCHS1, CHS1, OsPKS26, PKS26, OsCHS24, CHS24, OsCHS27, CHS27,OsMyb3, OSMYB3, MYB3, OsGL1D, OsMYB46, MYB46, Kala3, OsKala3, SMG3, OsSMG3, Os2R_MYB39, 2R_MYB39,C, Cp, OsC1, Os-C1, C1, OsMyb6, Myb6, OsPL6, PL6, OsGL1E, GL1E, Os2R_MYB63, 2R_MYB63, OsC1PLSr, C1PLSr
50388	34681693	Bhowal B., Bhattacharjee A., Goswami K., Sanan-Mishra N., Singla-Pareek SL., Kaur C., Sopory S.	Serotonin and Melatonin Biosynthesis in Plants: Genome-Wide Identification of the Genes and Their Expression Reveal a Conserved Role in Stress and Development.	Int J Mol Sci	22(20)		2021	COMT7,TDC7,MIR6249A,SL,TYDC,ASMT10,COMT1,ASMT17,TDC2,ASMT18,ASMT6,ASMT12,ASMT1,ASMT11,TDC6,ASMT2,ASMT3,ASMT19,_,ASMT4,MIR1846E,TDC1,ASMT14,ASMT8,ASMT9,ASMT5,ASMT16,ASMT7,SNAT1,TDC3,SNAT2	OsASMT2, ASMT2, OsCOMT7,OsTDC7,miR6249a, osa-miR6249a, osa-MIR6249a,OsSL, sl (spl1), sl*, sl, spl1, CYP71P1, Os CYP71P1, T5H, OsT5H, CYP71A1, OsCYP71A1, OsLLM1, LLM1, LLM1/OsSL, ELL1, OsELL1, ELL1/SL, OsT5H1,TyDC, OsTyDC, OsTYDC, TDC, OsTDC3, TDC3, OsTDC1,OsASMT10, OsCOMT16, COMT16,OsASMT1, ASMT1, OsCOMT1,OsASMT17, OsCOMT26, COMT26,OsTDC2, OsTDC3,OsASMT18, OsCOMT30, COMT30,OsASMT6, OsCOMT11, COMT11,OsASMT12, OsCOMT18, COMT18,ZRP4, OMT, ASMT, OsASMT, OsASMT1, ASMT1, OsASMT13, OsCOMT19, COMT19,OsASMT11, OsCOMT17, COMT17,OsTDC6,ZRP4, OsASMT2, OsASMT15,OsASMT3, OsCOMT8, COMT8,OsASMT19, OsCOMT31, COMT31,OsTDC2, TDC2,ZRP4, OsASMT4, OsCOMT9, COMT9,miR1846e, osa-miR1846e, osa-MIR1846e,OsTDC, TDC, TDC2, OsTDC1, OsTDC4,OsASMT14,OsASMT8, OsCOMT13, COMT13,ASMT, OsASMT9, OsCOMT14, COMT14,OsASMT5, OsCOMT10, COMT10,OsASMT16,OsASMT7, OsCOMT12, COMT12,OsSNAT1, OsSNAT, SNAT, OsGNAT2, GNAT2,OsTDC3, OsTDC5,OsSNAT2 
50389	34764946	Wang Y., Bao X., Li S.	Effects of Arbuscular Mycorrhizal Fungi on Rice Growth Under Different Flooding and Shading Regimes.	Front Microbiol	12	756752	2021	PT11,PR10A,PT2,PT6	OsPT11, PHT1-11, OsPht1;11, ORYsa;PHT1;11,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsPT2, PTH1-2, OsPht1;2, PHT1;2, OsPHT1;2,OsPT6, PHT1-6, OsPht1;6, OsLPT6:1, OsLPT1, OsPT6:1, Pht1;6, LPT6:1, LPT1, PT6:1
50390	34686019	Boorboori M.R., Li Z., Yan X., Dan M., Zhang Z., Lin W., Fang C.	Comparison of Silicon-Evoked Responses on Arsenic Stress between Different Dular Rice Genotypes.	Plants (Basel)	10(10)		2021	_,GSTU5,IDH,CGA1,GSTF5,GSTU4,GSTL2	,OsGSTU5,OsIDH,Cga1, OsCga1, OsCGA1, OsGATA11, GATA11,OsGSTF5, OsGST F5,OsGSTU4, GST4,OsGSTL2, GSTZ5, OsGSTZ5
50391	34466788	Dwivedi S.L., Reynolds M.P., Ortiz R.	Mitigating tradeoffs in plant breeding.	iScience	24(9)	102965	2021	GNP1,FZP,ALDH2B1  ,PQT3,MADS50,NOG1,XA21,EF-CD,WFP,PDR1,GSN1,BHLH34	GA20OX1, OsGA20ox1, 20ox1, GA20ox-1, ga20ox1, Os20ox, C20OX2, OsGA20ox2, OsGA20ox-1, GA20ox1, OsGNP1,fzp*, fzp, OsBD1, BD1, OsERF#078, OsERF078, OsERF78, ERF78, AP2/EREBP#133, AP2/EREBP133, BFL1, SGDP7, OsSGDP7,OsALDH2B1, OsALDH2b, ALDH2b,OsPQT3,OsMADS50, AGL20, SOC1, OsSOC1, RMADS208, OsSOC1/ OsMADS50/DTH3, DTH3, OsDTH3,OsNOG1,Xa21*, Xa21, OsXA21,Ef-cd, OsEf-cd,OsSPL14, SPL14, IPA1, WFP/IPA1, OsSPL14/WFP/IPA1, OsIPA1,  IPA1/OsSPL14,OsABCG45, OsPDR1, FCO1, OsPDR1.2, OsPDR1.3, OsPDR1.1,MKP1, OsMKP1, osmkp1, LARGE8, GLA1, OsGLA1,OsbHLH034, bHLH034
50392	34421965	Liu X.J., Sun J., Huang Y., Li C., Zheng P., Yuan Y., Chen H., Jan M., Zheng H., Du H., Tu J.	Osj10gBTF3-Mediated Import of Chloroplast Protein Is Essential for pollen Development in Rice.	Front Plant Sci	12	713544	2021	HSP82B,10GBTF3,PPR676	OsHSP82, hsp82B, HSP82,Osj10gBTF3, 10gBTF3, Os10gBTF3, BTF3a, OsBTF3a,OsPPR676, OsATP4, ATP4
50393	34478918	Li Z., Sun P., Sun P., Liang Y.K., Ge S.	OsBC1L1 and OsBC1L8 function in stomatal development in rice.	Biochem. Biophys. Res. Commun.	576	40-47	2021		
50394	34244709	Itoh A., Nakazato S., Wakabayashi H., Hamano A., Shenton M.R., Miyamoto K., Mitsuhashi W., Okada K., Toyomasu T.	Functional kaurene-synthase-like diterpene synthases lacking a gamma domain are widely present in Oryza and related species.	Biosci. Biotechnol. Biochem.	85(9)	1945-1952	2021		
50395	34411783	Bari M.A., El-Shehawi AM., Elseehy M.M., Naheen N.N., Rahman M.M., Kabir A.H.	Molecular characterization and bioinformatics analysis of transporter genes associated with Cd-induced phytotoxicity in rice (Oryza sativa L.).	Plant Physiol. Biochem.	167	438-448	2021		
50396	34430793	Bai J., Wang X., Yao X., Chen X., Lu K., Hu Y., Wang Z., Mu Y., Zhang L., Dong H.	Rice aquaporin OsPIP2;2 is a water-transporting facilitator in relevance to drought-tolerant responses.	Plant Direct	5(8)	e338	2021	BZIP12,BZIP46,COR413-TM1,PIP2A,PP2C30,PIP2;2,PIP1;3,PP2C1,PIP2;4	OsbZIP12, OsABF1, ABF1, OsOSE2, OSE2, OsbZIP12/OsABF1,ABL1, bZIP46, OsABL1, OsbZIP46, OsAREB8, OsABF2, ABF2, OsABF3, ABF3, OsbZIP46CA1, OsZIP46, ZIP46, OsbZIP46/OsABF2,OsCOR413-TM1, Oscor413-tm1,OsPIP2a, PIP2-1, PIP2a, PIP2.1, OsPIP2;1, PIP2;1, OsPIP2-1,OsPP2C30, OsPP48, PP48,OsPIP2;2, PIP2-2, OsPIP2-3,OsPIP1;3. PIP1.3, PIP1-3, RWC3, RWC-3, OsPIP1-3,OsPP2C1, OsSIPP2C1, SIPP2C1, OsPP2C68, PP2C68, OsPP108,OsPIP2;4, PIP2.4, PIP2-4, OsPIP2-4
50397	34421959	Xu K., Chen S., Li T., Yu S., Zhao H., Liu H., Luo L.	Overexpression of OsHMGB707, a High Mobility Group Protein, Enhances Rice drought tolerance by Promoting Stress-Related Gene Expression.	Front Plant Sci	12	711271	2021	BPH33,HMGB707,HMGB707,DREB1G,DREB1C,RPBF,HMGB710,POX22.3,HMGB1,PRX30,POX8.1,HSP16.9A	OsDjC10, DjC10, Bph33(t), Bph33,OsHMGB707,OsHMGB706,OsDREB1G, OsERF025, OsERF#025, OsERF25, ERF25, AP2/EREBP#138, AP2/EREBP138, OsDREB1I,OsDREB1C, CBF1, ERF26, OsERF026, OsERF#026, OsERF26, AP2/EREBP#098, AP2/EREBP98, OsCBF2, CBF2,OsDof3, OsDOF3, OsEnS-34, OsDof10, Dof10, OsDof-10, OsDOF1, DOF1, DOF3, OsRPBF, OsDOF7,OsHMGB710, OsNFD101, NFD101,POX22.3, OSPER, OsPOX, POX, Pir3, prx111, POX22, OsPOX1, POX1, OsPOX22.3, OsPR9, PR9,OsHMGB1, OsMNB1B, MNB1B,prx30, OsPrx30,POX8.1, prx110, POX8,Oshsp16.9A, OsHsp16.9A, HSP16.9A, OsHSP16.9A-CI
50398	34418975	Wu T., Ali A., Wang J., Song J., Fang Y., Zhou T., Luo Y., Zhang H., Chen X., Liao Y., Liu Y., Xu P., Wu X.	A homologous gene of OsREL2/ASP1, ASP-LSL regulates pleiotropic phenotype including long sterile lemma in rice.	BMC Plant Biol.	21(1)	390	2021	MADS4,MFS1,RAG,SPW1,ASP1	OsMADS4, PI1, DLN140, OsDLN140,ERF130, OsERF#130, OsERF130, AP2/EREBP#165, AP2/EREBP165, DLN151, OsDLN151,MADS3, OsMADS3, OsMADS3(t), RMADS222, RAG1, rf3,SPW1, spw1, MADS16, OsMADS16,OsLIS-L1, OsWD40-155, ASP1, TPR2, OsTPR2, OsREL2, REL2, OsTPL3, TPL3, OsTPL2, TPL2, ASP-LSL
50399	34402093	Wang X., He Y., Wei H., Wang L.	A clock regulatory module is required for salt tolerance and control of heading date in rice.	Plant Cell Environ.	44(10)	3283-3301	2021		
50400	34484255	Farooq M., Park J.R., Jang Y.H., Kim E.G., Kim K.M.	Rice Cultivars Under Salt Stress Show Differential Expression of Genes Related to the Regulation of Na+/K+ Balance.	Front Plant Sci	12	680131	2021	HKT3,SKC1,HKT6,HKT2,GPA6,NHX2,NHX3,NHX1,HKT9,HKT7,SOS1,HKT1,HKT4	OsHKT3, OsHKT2;3, HKT2;3,OsHKT8, HKT8, Os-HKT1;5, OsHKT1;5, HKT1;5, SKC1, qSKC-1(t), OsSKC1,OsHKT6, OsHKT1;3, HKT1;3, OsHKT1;3_FL, OsHKT1;3_V1, OsHKT1;3_V2, OsHKT1;3_V3, OsHKT1;3_V4, OsHKT1;3_V5,OsHKT2, OsHKT2;2,OsNHX5, NHX5, OsGPA6,OsNHX2,OsNHX3, OsNHX2, NHX2,OsNHX1, OcNHX1, OgNHX1, OrNHX1, OpNHX1, ObNHX1,OsHKT9, OsHKT2;4, HKT2;4,OsHKT7, OsHKT1;4, HKT1;4,OsSOS1, OsNHA1, NHA1, SOS1/NHX7, NHX7, OsNHX7,OsHKT1, OsHKT2;1, HKT2;1, Ni (Nipponbare)-OsHKT1, Po (Pokkali)-HKT1, OsHKT1;1, HKT1;1,OsHKT4, OsHKT1;1, HKT1;1, OsHKT2, RNC4, OsHKT1;1-FL, OsHKT1;1-V1, OsHKT1;1-V2, OsHKT1;1-V3, OsHKT1;1-V4, OsHKT1;1-V5, OsHKT1;1-V6, OsHKT1;1-V7, OsHKT1;1-V8
50401	34408766	Dangol S., Nguyen N.K., Singh R., Chen Y., Wang J., Lee H.G., Hwang B.K., Jwa N.S.	Mitogen-activated protein kinase OsMEK2 and OsMPK1 Signaling Is Required for Ferroptotic Cell Death in Rice-<i>Magnaporthe oryzae</i> Interactions.	Front Plant Sci	12	710794	2021	DSG1,PR1B,RBOHB,WRKY90,MKK1,NADP-ME2,_,MPK6	OsMAPK6, MAPK6, OsMPK6, OsSIPK, SIPK, OsMAPK1, MAPK1, MPK1, OsMPK1, MPK6, OsDSG1,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1, OsPR1a, PR1a,rbohB, OsrbohB, Os rbohB, OsRbohB, OsNox1, Nox1, Os-RbohB, RbohB, OsRboh1, Rboh1,OsWRKY90,OsMKK1, OsMEK2, MEK2, OsMAPKK1, MAPKK1, OsMAP2K2, MAP2K2,OscytME1, OsNADP-ME2-3, NADP-ME2-3,OsPAL02, PAL02, OsPAL5, PAL5, OsPAL2. PAL2, OsPAL1,OsMPK6, OsDR6, DR6, OsMPK4, MPK4, OsMAPK4, MAPK4
50402	34451767	Jeong B.Y., Lee Y., Kwon Y., Kim J.H., Ham T.H., Kwon S.W., Lee J.	Genome-Wide Association Study Reveals the Genetic Basis of Chilling Tolerance in Rice at the Reproductive Stage.	Plants (Basel)	10(8)		2021	PERK7,_,_	OsSTA186, OsPERK7,,
50403	34417910	Ma Y., Zhao J., Fu H., Yang T., Dong J., Yang W., Chen L., Zhou L., Wang J., Liu B., Zhang S., Edwards D.	Genome-Wide Identification, Expression and Functional Analysis Reveal the Involvement of FCS-like zinc finger Gene Family in Submergence Response in Rice.	Rice (N Y)	14(1)	76	2021	FLZ27,FLZ1,FLZ5,FLZ23,FLZ21,FLZ8,FLZ14,FLZ18,FLZ13,FLZ2,FLZ26,FLZ17,FLZ6,FLZ16,AMY3D,FLZ29,FLZ7,FLZ24,FLZ22,FLZ12,FLZ9,OSK1,FLZ4,FLZ19,FLZ28,FLZ25,FLZ15,FLZ3,FLZ20,FLZ10,FLZ11	OsFLZ27,OsFLZ1,OsFLZ5,OsEnS-110, EnS-110, OsFLZ23,OsFLZ21,OsFLZ8,OsFLZ14,OsFLZ18,OsFLZ13,OsFLZ2,OsFLZ26,OsFLZ17,OsFLZ6,OsFLZ16,Amy3D/E*(RAmy3D/E), alpha Amy3, AmyII-4, AMY1.3, Amy3D, Amy3D/E*, RAmy3D/E, Amy3D_E, Amy8, aAmy3, RAmy3D, OsAmy3D, alphaAmy3, OsRamy3D,OsFLZ29,OsFLZ7,OsFLZ24,OsFLZ22,OsFLZ12,OsFLZ9,osk1, SnRK1A, OsSnRK1A, OsSNRK1a, SnRK1A/OSK1, SnRK1a, OsSnRK1.2, SnRK1.2, OsSnRK1alphaA, SnRK1alphaA,OsFLZ4,OsFLZ19,OsFLZ28,OsFLZ25,OsFLZ15,OsFLZ3,OsFLZ20,OsFLZ10,OsFLZ11
50404	34372692	Gao Y., Ning Q., Yang Y., Liu Y., Niu S., Hu X., Pan H., Bu Z., Chen N., Guo J., Yu J., Cao L., Qin P., Xing J., Liu B., Liu X., Zhu Y.	Endophytic <i>Streptomyces hygroscopicus</i> OsiSh-2-Mediated Balancing between Growth and disease resistance in Host Rice.	MBio	12(4)	e0156621	2021	GS2,_,ALDP,LFNR1,CNX,RBOHG,BETACA1,RAB11A2,PGAM-I,ONI1	OsGS2, GLN2, OsGLN2, RGS31, OsRGS31,Adh3, OsAdh3, ADH2, OsADH2,Aldo, OsALDO, ALDO, FBAase, OsFBAase, ALDOA, OsALDOA ,OsLFNR1, LFNR2, Os-LFNR2, OsLFNR2, FNR, PetH-2,OsCNX, OsCNX1, CNX1,rbohG, OsrbohG, Os rbohG, OsRbohG, OsNox7, Nox7, OsrbohB, OsRBOHB, RBOHB, OsRboh7, Rboh7,OsCA, CA, OsbetaCA1, betaCA1, CA1,OsRab11A2, Rab11A2, RABA2a, OsRABA2a,PGAM-i, OsPGAM-i,OsONI1, FDH, OsCUT4, CUT4, OsKCS7, KCS7
50405	34434221	Liu J., Zhan J., Chen J., Lu X., Zhi S., Ye G.	Validation of Genes Affecting Rice Grain Zinc Content Through Candidate Gene-Based Association Analysis.	Front Genet	12	701658	2021	ZIP4,SAMS1,LCD1,NRAMP6,ABI3,YSL15,MTP1,FRDL1,IRT2,ZIFL7,ZIP7,IRT1,YSL7,OPT7	OsZIP4,OsSAMS1, OS-SAMS1, OsSAMS, SAM, SAMS,NRAMP5, OsNRAMP5, OsNramp5, OsLCD1,OsNRAMP6, Nramp6, l-NRAMP6, s-NRAMP6, OsNramp6.8, OsNramp1,OsLFL2, LFL2, OsIDEF1, IDEF1, OsABI3,OsYSL15, OsYs7,OsMTP1,OsFRDL1,OsIRT2, OsIRT1, OsZIP15, ZIP15,OsZIFL7, OsTOM3, TOM3,OsZIP7,OsIRT1, ZIP10, OsZIP10, OsZIP12, ZIP12,OsYSL7, OsYs4,OPT, OsOPT7
50406	34434206	Hu Z., Xiong Q., Wang K., Zhang L., Yan Y., Cao L., Niu F., Zhu J., Hu J., Wu S.	Identification of a New Giant Emrbryo Allele, and Integrated Transcriptomics and Metabolomics Analysis of giant embryo Development in Rice.	Front Plant Sci	12	697889	2021	GE1	ge1, ge, CYP78A13, OsCYP78A13, GE, BG2, GES, OsGE/CYP78B5, CYP78B5, OsCYP78B5
50407	33820598	Wang Z., Zhang Q., Qin J., Xiao G., Zhu S., Hu T.	OsLEA1a overexpression enhances tolerance to diverse abiotic stresses by inhibiting cell membrane damage and enhancing ROS scavenging capacity in transgenic rice.	Funct. Plant Biol.	48(9)	860-870	2021		
50408	34328250	Lee D.Y., Hua L., Khoshravesh R., Giuliani R., Kumar I., Cousins A., Sage T.L., Hibberd J.M., Brutnell T.P.	Engineering chloroplast development in rice through cell-specific control of endogenous genetic circuits.	Plant Biotechnol. J.	19(11)	2291-2303	2021	CGA1	Cga1, OsCga1, OsCGA1, OsGATA11, GATA11
50409	34512689	Chutimanukul P., Saputro T.B., Mahaprom P., Plaimas K., Comai L., Buaboocha T., Siangliw M., Toojinda T., Chadchawan S.	Combining Genome and Gene Co-expression Network Analyses for the Identification of Genes Potentially Regulating salt tolerance in Rice.	Front Plant Sci	12	704549	2021	OSCA2.5,SUB34,PSB28,_,_,PRX89,BTBZ1,_,_	OsEnS-22, OsOSCA2.5, OsIOSCA2.5, OsDDP2, DDP2, OsDDP2.1, OsDDP2.2, OsERD, ERD,OsSub34,Psb28, OsPSB28,,,prx89, OsPRX89,OsBTBZ1,,
50410	34408762	Zhong H., Liu S., Zhao G., Zhang C., Peng Z., Wang Z., Yang J., Li Y.	Genetic Diversity Relationship Between Grain Quality and Appearance in Rice.	Front Plant Sci	12	708996	2021	FBOX394,HYPRP45	OsFbox394, Os_F0722,  OsFBX255, FBX255,OsHyPRP45, HyPRP45
50411	34314535	Tao Y., Zou T., Zhang X., Liu R., Chen H., Yuan G., Zhou D., Xiong P., He Z., Li G., Zhou M., Liu S., Deng Q., Wang S., Zhu J., Liang Y., Yu X., Zheng A., Wang A., Liu H., Wang L., Li P., Li S.	Secretory lipid transfer protein OsLTPL94 acts as a target of EAT1 and is required for rice pollen wall development.	Plant J.	108(2)	358-377	2021		
50412	34459564	Liu X., Song L., Zhang H., Lin Y., Shen X., Guo J., Su M., Shi G., Wang Z., Lu G.D.	Rice ubiquitin-conjugating enzyme OsUBC26 is essential for immunity to the blast fungus Magnaporthe oryzae.	Mol. Plant Pathol.	22(12)	1613-1623	2021	UCIP12,ZFP1 ,WRKY45,UCIP4,APIP6,RLCK197,C3H40,RFP1,UCIP15,UCIP13,UBC26,UCIP5,RFI2,NAC40,CUL1,CK1A.3,UCIP11,CZOGT3,PUB60,DLN108,UCIP16,UCIP9	OsUCIP12,OsRFP, OsZFP1, UCIP2, OsUCIP2,  OsRING145, RING145,OsWRKY45, OsWRKY45-1, OsWRKY45-2, WRKY45-1, WRKY45-2,OsUCIP4,  OsRING14, RING14,OsAPIP6,  OsRING382, RING382, IPI7, OsIPI7,OsPUB70, PUB70, OsRLCK197, UCIP19, OsUCIP19,  OsPUB70, PUB70, OsBSK5, BSK5,OsC3H40, UCIP14, OsUCIP14,OsRZFP34, OsRFP1, RZFP34, UCIP18, OsUCIP18,  OsRING160, RING160,OsUCIP15,OsUCIP13,OsUBC26,OsUCIP5,OsRFPH2-10, RFPH2-10, OsRFI2, UCIP1, OsUCIP1,  OsRING344, RING344,ONAC040, ONAC40, ONAC054, ONAC54, OsNTL5, NTL5, UCIP17, OsUCIP17,OsCUL1, UCIP8, OsUCIP8,OsCK1a.3, UCIP10, OsUCIP10, OsCKq1, CKq1,OsUCIP11,OscZOGT3, cZOGT3, UCIP7, OsUCIP7,OsPUB60, UCIP6, OsUCIP6,  OsPUB60, PUB60,OsRFP, OsDLN108, UCIP3, OsUCIP3,  OsRING214, RING214,OsUCIP16,OsUCIP9
50413	34376020	Li W., Yang B., Xu J., Peng L., Sun S., Huang Z., Jiang X., He Y., Wang Z.	A genome-wide association study reveals that the 2-oxoglutarate/malate translocator mediates seed vigor in rice.	Plant J.	108(2)	478-491	2021		
50414	34038040	Li J., Tang B., Li Y., Li C., Guo M., Chen H., Han S., Li J., Lou Q., Sun W., Wang P., Guo H., Ye W., Zhang Z., Zhang H., Yu S., Zhang L., Li Z.	Rice SPL10 positively regulates trichome development through expression of HL6 and auxin-related genes.	J Integr Plant Biol	63(8)	1521-1537	2021		
50415	34362301	Niu Y., Chen T., Wang C., Chen K., Shen C., Chen H., Zhu S., Wu Z., Zheng T., Zhang F., Xu J.	Identification and allele mining of new candidate genes underlying rice grain weight and grain shape by genome-wide association study.	BMC Genomics	22(1)	602	2021	CGS2,_,MADS47,TLP13,SERL5,_,COG1	OsaCGS2, OsCGS2,,OsMADS47, OsMDP1, MDP, MDP1,OsTLP6, TLP6, OsTLP13, OsFbox569, Os_F0461,  OsFBT13, FBT13,OsSERL5, OsBAK1-4, OsSERK1, BAK1-4, SERK1,,OsMADS17, MADS17, NMADS3, RMADS213, nmads3
50416	34343171	Li X., Yu B., Wu Q., Min Q., Zeng R., Xie Z., Huang J.	OsMADS23 phosphorylated by SAPK9 confers drought and salt tolerance by regulating ABA biosynthesis in rice.	PLoS Genet.	17(8)	e1009699	2021	MADS23,P5CR,NCED3,P5CS,SAPK9,NCED1,NCED2	OsMADS23, MADS-23,OsP5CR,OSNCED3, OsNCED-3, OsNCED3, OsNCED3a, NCED3a, OsNCED4, NCED4, OsNECD2, OsNCED2b, NCED2b ,OsP5CS, P5CS1, OsP5CS1, OsALDH18B1, ALDH18B1, OsP5CS-1, P5CS-1,OsSAPK9, OsSnRK2.9, SnRK2.9,OSNCED1, OsNCED-1, OsNCED3, OsNced3, NCED3, OsNCED9, NCED9,OsNCED2, OsNced2, OsCCD4b, CCD4b, OsCCD4c, CCD4c
50417	34289124	You L.Y., Lin J., Xu H.W., Chen C.X., Chen J.Y., Zhang J., Zhang J., Li Y.X., Ye C., Zhang H., Jiang J., Zhu J.K., Li Q.Q., Duan C.G.	Intragenic heterochromatin-mediated alternative polyadenylation modulates miRNA and pollen development in rice.	New Phytol.	232(2)	835-852	2021		
50418	34578544	Wu Q., Shi J., Jiang X., Wu H.	Regulatory Mechanism of Copper Oxide Nanoparticles on Uptake of Different Species of Arsenic in Rice.	Nanomaterials (Basel)	11(9)		2021	LSI1,HAC1;1 ,NIP1;1,PT4,PT1,PT8,HAC4,LSI2	lsi1, NIP2-1, OsNIP2;1, NIP2;1, OsLsi1, lsi(t), OsNIP2.1/OsLsi1/OsSIIT1, OsNIP2.1, NIP2.1,OsStr5, STR5, OsHAC1;1,OsNIP1;1, NIP1-1, rMIP1, MIP1, OsNIP1.1, NIP1.1,OsPT4, PHT1-4, OsPht1;4, PHT1-2, PHT1;4, OsPHT1;4,OsPT1, PHT1-1, OsPht1;1, Pht1;1, OsPHT1;1, PHT1;1,OsPT8, PHT1-8, OsPht1;8, Pht1;8, PHT1;8, OsPHT1;8,OsStr8, STR8, OsHAC4,Lsi2, SIET1, OsLsi2, OsSIET1
50419	34368900	Wang P., Li J., Zhang Z., Zhang Q., Li X., Xiao J., Ma H., Wang S.	OsVQ1 links rice immunity and flowering via interaction with a mitogen-activated protein kinase OsMPK6.	Plant Cell Rep.	40(10)	1989-1999	2021		
50420	34270159	Chen J., Wang L., Yang Z., Liu H., Chu C., Zhang Z., Zhang Q., Li X., Xiao J., Wang S., Yuan M.	The rice Raf-like MAPKKK OsILA1 confers broad-spectrum resistance to bacterial blight by suppressing the OsMAPKK4-OsMAPK6 cascade.	J Integr Plant Biol	63(10)	1815-1842	2021		
50421	34278584	Cheah B.H., Chen Y.L., Lo J.C., Tang I.C., Yeh K.C., Lin Y.F.	Divalent nutrient cations: Friend and foe during zinc stress in rice.	Plant Cell Environ.	44(10)	3358-3375	2021		
50422	34456953	Singh R.R., Pajar J.A., Audenaert K., Kyndt T.	Induced Resistance by Ascorbate Oxidation Involves Potentiating of the Phenylpropanoid Pathway and Improved Rice Tolerance to Parasitic Nematodes.	Front Plant Sci	12	713870	2021	PAL,PAL1	OsPAL, OsPAL08, PAL2, GP-28, GP28, PAL08, OsPAL2, OsPAL8, PAL8,OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6
50423	34502018	Wang Y., Du F., Wang J., Li Y., Zhang Y., Zhao X., Zheng T., Li Z., Xu J., Wang W., Fu B.	Molecular Dissection of the Gene <i>OsGA2ox8</i> Conferring Osmotic Stress Tolerance in Rice.	Int J Mol Sci	22(17)		2021	_,ADC2,CHI7,KS3,GA2OX6,CYP75B4,GA2OX5,CPS2,GA2OX8,KO5,KS7,LOX7,GA2OX3,ANS,LOX1,PAOB,CHI6,GA2OX9,LSC6,GA2OX10,NCED1,GNP1,CYP93G1,KO4,ODCA,SBI	AAO,ADCa, OsAdc2, OsADC2,CHI, OsCHI, OsCHI7, OsCHIL2, CHIL2,OsKS3, OSKS3, KS3, KSL3, OsKSL3, OsKS2, KS2, OsTPS25, TPS39, OsTPS39,OsGA2ox6,OsCYP75B4, OsC5'H, C5'H, OsF3'H9, F3'H9, OsCYP71P2, CYP71P2,OsGA2ox5, 2-ODD32, Os2-ODD32, 2ODD32, Os2ODD32,OsCPS2, cps2, OsCPS2ent, CYC2, OsCyc2, OsCYC2, OsCPSL1, cpsl1, OsCyc2/OsCPS2, OsTPS7, Os-CPS2, TPS13, OsTPS13,OsGA2ox8,OsKO5, OSKOL5, KOS2, OsKOS2, CYP701A9, OsCYP701A9, OsKO1, KO1,OsKS7, KS7, KSL7, OsKSL7, DTC1, OsDTC1, OsKS3, OsDTC1/OsKS7, OsTPS6, TPS6, TPS38, OsTPS38,OsLOX7, LOX6, OsLOX6,OsGA2ox3, ga2ox 3, OsGA2ox-3, GA2ox3, GA2ox-3, GA2ox4,ANS, OsANS1, ANS1, LDOX, LDOX1, OsLDOX, OsLDOX1,OsLOX1, OsLOX5, OsLOX2, LOX2,PAOb, OsPAOb, OsPAO6, OsPAO2, PAO6, PAO2,CHI, OsCHI6, OsCHIL1, CHIL1,OsGA2ox9, GA2ox7, 2-ODD35, Os2-ODD35, 2ODD35, Os2ODD35,UGT, OsUFGT/Os3GT, OsUF3GT, OsUFGT, UFGT, OsLSC6, UF3GT,OsGA2ox10,OsNCED1, OsCCD4a, CCD4a,GA20OX1, OsGA20ox1, 20ox1, GA20ox-1, ga20ox1, Os20ox, C20OX2, OsGA20ox2, OsGA20ox-1, GA20ox1, OsGNP1,OsCYP93G1, OsFNSII, FNSII, OsCYP71S4, CYP71S4,OsKO4, OsKOL4, KOS1, CYP701A8, OsCYP701A8, OsKO2, CYP701A8/OsKOL4,ODCa, OsODC1, ODC1 ,GA2OX4, OsGA2ox4, ga2ox 4, OsGA2ox-4, OsSBI
50424	34397127	Zhao T., Ren L., Zhao Y., You H., Zhou Y., Tang D., Du G., Shen Y., Li Y., Cheng Z.	Reproductive cells and peripheral parietal cells collaboratively participate in meiotic fate acquisition in rice anthers.	Plant J.	108(3)	661-671	2021		
50425	34375849	Mehmood S., Ahmed W., Rizwan M., Imtiaz M., Mohamed Ali Elnahal AS., Ditta A., Irshad S., Ikram M., Li W.	Comparative efficacy of raw and HNO3-modified biochar derived from rice straw on vanadium transformation and its uptake by rice (Oryza sativa L.): Insights from photosynthesis, antioxidative response, and gene-expression profile.	Environ. Pollut.	289	117916	2021		
50426	34445755	Park H.J., Jung H.M., Lee A., Jo S.H., Lee H.J., Kim H.S., Jung C.K., Min S.R., Cho H.S.	SUMO Modification of OsFKBP20-1b Is Integral to Proper Pre-mRNA Splicing upon Heat Stress in Rice.	Int J Mol Sci	22(16)		2021	HSP101,SCE2,NAC5,UBC3,LEA3-1,SUMO2,HSFA2A,HSFA2D,SUMO1,HSP82A,FKBP20-1B,SR45	Oshsp101, OsHSP101, ClpB-cyt, OsClpB-cyt, ClpB-C/Hsp100, OsClpB-C,OsSce2, Sce2, OsUBC2, UBC2, OsSCE1a, SCE1a, OsSCE1a.1, OsSCE1a.2,OsNAC5, NAC71, ONAC071, ONAC009, ONAC9, ONAC020, ONAC20, OnNAC5*, OnNAC5, OsNAC5/ONAC009,OsUBC3, OsSCE1c, SCE1c, OsSCE1c.1, OsSCE1c.2, OsSCE3, SCE3,OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3, OsLEA3A, LEA3A,OsSUMO2,HSfA2a, OsHsfA2a, OsHsf-11, rHsf4, OsHSF11, HSF11, HSF4, RHSP2, OsHsfA2a-1, OsHsfA2a-2, OsHsfA2a-3, OsHsfA2a-4, OsHsfA2a-5, OsHsfA2a-6, OsHsfA2e, HsfA2e ,HSfA2d, OsHsfA2d, OsHsf-08, rHsf7, HSF08, OsHSF8, HSF8, HSF7, OsHSF7, OsHSFA2dI, OsHSFA2dII, OsHSFA2dIII, OsHsfA6b, HsfA6b, OsHsf2d, Hsf2d,smt3, SMT3, OsSUMO1,OsHSP82A, hsp82A, HSP90, OsHSP90, OsHSP81, HSP81,OsFKBP20-1b,OsSR45
50427	34319767	Yu L., Yang C., Ji Z., Zeng Y., Liang Y., Hou Y.	First Report of New Bacterial Leaf Blight of Rice Caused by Pantoea ananatis in Southeast China.	Plant Dis.			2021		
50428	34290268	Villacastin A.J., Adams K.S., Boonjue R., Rushton P.J., Han M., Shen J.Q.	Dynamic differential evolution schemes of WRKY transcription factors in domesticated and wild rice.	Sci Rep	11(1)	14887	2021		
50429	34401552	Kumar N., Jeena N., Kumar A., Khwairakpam R., Singh H.	Comparative response of rice cultivars to elevated air temperature in Bhabar region of Indian Himalaya: status on yield attributes.	Heliyon	7(7)	e07474	2021		
50430	34273847	Yang R., He Y., Luo L., Zhu M., Zan S., Guo F., Wang B., Yang B.	The interaction between selenium and cadmium in the soil-rice-human continuum in an area with high geological background of selenium and cadmium.	Ecotoxicol. Environ. Saf.	222	112516	2021		
50431	34297775	Wu Y., Wang S., Nie W., Wang P., Fu L., Ahmad I., Zhu B., Chen G.	A key antisense sRNA modulates the oxidative stress response and virulence in Xanthomonas oryzae pv. oryzicola.	PLoS Pathog.	17(7)	e1009762	2021		
50432	34446208	Mo F., Hu X., Ding Y., Li R., Long Y., Wu X., Li M.	Naturally produced magnolol can significantly damage the plasma membrane of Rhizoctonia solani.	Pestic Biochem Physiol	178	104942	2021		
50433	34316338	Ishimaru T., Sasaki K., Nozaki I., Ichihashi M., Shimizu H., Wakayama M., Hirabayashi H.	Effect of the light and dark conditions on flower opening time between cultivated rice (<i>Oryza sativa</i>) and a near-isogenic early-morning flowering line.	AoB Plants	13(4)	plab040	2021		
50434	34386025	Mohapatra S., Panda A.K., Bastia A.K., Mukherjee A.K., Sanghamitra P., Meher J., Mohanty S.P., Pradhan S.K.	Development of Submergence-Tolerant, Bacterial Blight-Resistant, and High-Yielding Near Isogenic Lines of Popular Variety, 'Swarna' Through Marker-Assisted Breeding Approach.	Front Plant Sci	12	672618	2021		
50435	34305984	Luong A.M., Adam H., Gauron C., Affortit P., Ntakirutimana F., Khong N.G., Le Q.H., Le T.N., Fournel M., Lebrun M., Tregear J., Jouannic S.	Functional Diversification of <i>euANT/PLT</i> Genes in <i>Oryza sativa</i> Panicle Architecture Determination.	Front Plant Sci	12	692955	2021		
50436	34264425	Yang F., Xiong M., Huang M., Li Z., Wang Z., Zhu H., Chen R., Lu L., Cheng Q., Wang Y., Tang J., Zhuang H., Li Y.	Panicle Apical Abortion 3 Controls Panicle Development and seed size in Rice.	Rice (N Y)	14(1)	68	2021		
50437	34324072	Basunia M.A., Nonhebel H.M., Backhouse D., McMillan M.	Localised expression of OsIAA29 suggests a key role for auxin in regulating development of the dorsal aleurone of early rice grains.	Planta	254(2)	40	2021		
50438	34900288	Du J., Liu F., Zhao L., Liu C., Fu Z., Teng Y.	Mercury horizontal spatial distribution in paddy field and accumulation of mercury in rice as well as their influencing factors in a typical mining area of Tongren City, Guizhou, China.	J Environ Health Sci Eng	19(2)	1555-1567	2021		
50439	34250550	Jamra G., Agarwal A., Singh N., Sanyal S.K., Kumar A., Pandey G.K.	Ectopic expression of finger millet calmodulin confers drought and salinity tolerance in Arabidopsis thaliana.	Plant Cell Rep.	40(11)	2205-2223	2021		
50440	34247109	Br?unlich S., Koller T., Glauser G., Krattinger S.G., Keller B.	Expression of the wheat disease resistance gene Lr34 in transgenic barley leads to accumulation of abscisic acid at the leaf tip.	Plant Physiol. Biochem.	166	950-957	2021		
50441	34325094	Chen R., Cheng N., Ding G., Ren F., Lv J., Shi R.	Predictive model for cadmium uptake by maize and rice grains on the basis of bioconcentration factor and the diffusive gradients in thin-films technique.	Environ. Pollut.	289	117841	2021		
50442	34224013	Gan L., Huang B., Song Z., Zhang Y., Zhang Y., Chen S., Tong L., Wei Z., Yu L., Luo X., Zhang X., Cai D., He Y.	Unique Glutelin Expression Patterns and Seed Endosperm Structure Facilitate Glutelin Accumulation in Polyploid Rice Seed.	Rice (N Y)	14(1)	61	2021		
50443	34187621	Endo T., Asaka D., Nakayama T., Saito S., Kodama H., Mitsuyoshi R., Sugimoto N., Omae S., Takagi H., Wakasa Y., Ozawa K., Takano M., Takaiwa F., Kojima H., Saito S.	Long-term oral administration of transgenic rice containing cedar pollen T-cell epitopes potentially improves medication- and allergy-related quality-of-life scores.	Allergy and Asthma Proceedings	42(4)	293-300	2021		
50444	34354684	Zhou H., Ren Z.H., Zu X., Yu X.Y., Zhu H.J., Li X.J., Zhong J., Liu E.M.	Efficacy of Plant Growth-Promoting Bacteria <i>Bacillus cereus</i> YN917 for Biocontrol of Rice Blast.	Front Microbiol	12	684888	2021		
50445	34242302	Wang L., Huang D.	Nitrogen and phosphorus losses by surface runoff and soil microbial communities in a paddy field with different irrigation and fertilization managements.	PLoS ONE	16(7)	e0254227	2021		
50446	34360958	Wei X., Zhou H., Xie D., Li J., Yang M., Chang T., Wang D., Hu L., Xie G., Wang J., Wang L.	Genome-Wide Association Study in Rice Revealed a Novel Gene in Determining plant height and Stem Development, by Encoding a WRKY Transcription Factor.	Int J Mol Sci	22(15)		2021		
50447	34401087	Sumardiono S., Budiyono, Kusumayanti H., Prakoso N.I.A., Paundrianagari F.P., Cahyono H.	Influence of composite flour constituents and extrusion temperature in the production of analog rice.	Food Sci Nutr	9(8)	4385-4393	2021		
50448	34260064	Chen F., Dong G., Wang F., Shi Y., Zhu J., Zhang Y., Ruan B., Wu Y., Feng X., Zhao C., Yong M.T., Holford P., Zeng D., Qian Q., Wu L., Chen Z.H., Yu Y.	A beta-ketoacyl carrier protein reductase confers heat tolerance via the regulation of fatty acid biosynthesis and stress signaling in rice.	New Phytol.	232(2)	655-672	2021		
50449	34294912	Yu Q., Liu S., Yu L., Xiao Y., Zhang S., Wang X., Xu Y., Yu H., Li Y., Yang J., Tang J., Duan H.C., Wei L.H., Zhang H., Wei J., Tang Q., Wang C., Zhang W., Wang Y., Song P., Lu Q., Zhang W., Dong S., Song B., He C., Jia G.	RNA demethylation increases the yield and biomass of rice and potato plants in field trials.	Nat. Biotechnol.	39(12)	1581-1588	2021		
50450	34287928	Wu J., Yu C., Huang L., Gan Y.	A rice transcription factor, OsMADS57, positively regulates high salinity tolerance in transgenic Arabidopsis thaliana and Oryza sativa plants.	Physiol Plant	173(3)	1120-1135	2021		
50451	34215911	Chu J., Xu H., Dong H., Xuan Y.H.	Loose Plant Architecture 1-Interacting kinesin-like protein KLP Promotes Rice Resistance to Sheath Blight Disease.	Rice (N Y)	14(1)	60	2021		
50452	34264963	Potcho P.M., Okpala N.E., Korohou T., Imran M., Kamara N., Zhang J., Aloryi K.D., Tang X.	Nitrogen sources affected the biosynthesis of 2-acetyl-1-pyrroline, cooked rice elongation and amylose content in rice.	PLoS ONE	16(7)	e0254182	2021		
50453	34276751	Gao B., Hu S., Jing L., Niu X., Wang Y., Zhu J., Wang Y., Yang L.	Alterations in Source-Sink Relations Affect Rice Yield Response to Elevated CO2: A Free-Air CO2 Enrichment Study.	Front Plant Sci	12	700159	2021		
50454	34243710	Du Z., Su Q., Wu Z., Huang Z., Bao J., Li J., Tu H., Zeng C., Fu J., He H.	Genome-wide characterization of MATE gene family and expression profiles in response to abiotic stresses in rice (Oryza sativa).	BMC Ecol Evol	21(1)	141	2021		
50455	34356322	Basit F., Chen M., Ahmed T., Shahid M., Noman M., Liu J., An J., Hashem A., Fahad Al-Arjani AB., Alqarawi A.A., Alsayed M.F.S., Fathi Abd Allah E., Hu J., Guan Y.	Seed Priming with Brassinosteroids Alleviates Chromium Stress in Rice Cultivars via Improving ROS Metabolism and Antioxidant Defense Response at Biochemical and Molecular Levels.	Antioxidants (Basel)	10(7)		2021		
50456	34218658	Yang T., Zhang T., Zhou X., Wang P., Gan J., Song B., Yang S., Yang C.G.	Dysregulation of ClpP by Small-Molecule Activators Used Against <i>Xanthomonas oryzae pv. oryzae</i> Infections.	J. Agric. Food Chem.	69(27)	7545-7553	2021		
50457	34290724	Yang G., Chen G., Li C., Fu J., Guo Y., Liang H.	Convolutional Rebalancing Network for the Classification of Large Imbalanced Rice Pest and Disease Datasets in the Field.	Front Plant Sci	12	671134	2021		
50458	34284724	Verstraeten B., Atighi M.R., Ruiz-Ferrer V., Escobar C., De Meyer T., Kyndt T.	Non-coding RNAs in the interaction between rice and Meloidogyne graminicola.	BMC Genomics	22(1)	560	2021		
50459	34274522	Riemer E., Qiu D., Laha D., Harmel R.K., Gaugler P., Gaugler V., Frei M., Hajirezaei M.R., Laha N.P., Krusenbaum L., Schneider R., Saiardi A., Fiedler D., Jessen H.J., Schaaf G., Giehl R.F.H.	ITPK1 is an InsP6/ADP phosphotransferase that controls phosphate signaling in Arabidopsis.	Mol Plant	14(11)	1864-1880	2021		
50460	34531988	Zhao Y., Ye S., Wan H., Zhang X., Sun M.	Characterization and functional properties of conjugates of rice protein with exopolysaccharides from <i>Arthrobacter</i> ps-5 by Maillard reaction.	Food Sci Nutr	9(9)	4745-4757	2021		
50461	34299294	Liang T., Yuan Z., Fu L., Zhu M., Luo X., Xu W., Yuan H., Zhu R., Hu Z., Wu X.	Integrative Transcriptomic and Proteomic Analysis Reveals an Alternative Molecular Network of glutamine synthetase 2 Corresponding to Nitrogen Deficiency in Rice (<i>Oryza sativa</i> L.).	Int J Mol Sci	22(14)		2021		
50462	34327596	Ma Y., Ren X., Liang C.	Exogenous Ca2+ enhances antioxidant defense in rice to simulated acid rain by regulating ascorbate peroxidase and glutathione reductase.	Planta	254(2)	41	2021		
50463	34259718	Zhou X., Shafique K., Sajid M., Ali Q., Khalili E., Javed M.A., Haider M.S., Zhou G., Zhu G.	Era-like GTP protein gene expression in rice.	Braz J Biol	82	e250700	2021		
50464	34321862	Zhang W., Li H., Tan X., Li Z., Zhong C., Xiao W., Xiong Y., Zhang W., Yang L., Wu G.	Fe-Mn Plaque Formation Mechanism Underlying the Inhibition of Cadmium Absorption by Rice Under Oxygation Conditions.	Environ. Eng. Sci.	38(7)	676-684	2021		
50465	34255233	Wu J., Qiu S., Wang M., Xu C., Deng X.W., Tang X.	Construction of a weight-based seed sorting system for the third-generation hybrid rice.	Rice (N Y)	14(1)	66	2021		
50466	34381479	Zheng Y., Zhang X., Liu X., Qin N., Xu K., Zeng R., Liu J., Song Y.	Nitrogen Supply Alters Rice Defense Against the Striped Stem Borer <i>Chilo suppressalis</i>.	Front Plant Sci	12	691292	2021		
50467	34322324	Kakar N., Bheemanahalli R., Jumaa S., Redo?a E., Warburton M.L., Reddy K.R.	Assessment of agro-morphological, physiological and yield traits diversity among tropical rice.	PeerJ	9	e11752	2021		
50468	34295609	Gujjar R.S., Roytrakul S., Chuekong W., Supaibulwatana K.	A synthetic cytokinin influences the accumulation of leaf soluble sugars and sugar transporters, and enhances the drought adaptability in rice.	3 Biotech	11(8)	369	2021		
50469	34276729	Tahmasebi A., Niazi A.	Comparison of Transcriptional Response of C3 and C4 Plants to Drought Stress Using Meta-Analysis and Systems Biology Approach.	Front Plant Sci	12	668736	2021		
50470	34287741	Crofts N., Satoh Y., Miura S., Hosaka Y., Abe M., Fujita N.	Active-type starch synthase (SS) IIa from indica rice partially complements the sugary-1 phenotype in japonica rice endosperm.	Plant Mol. Biol.			2021		
50471	34264430	Wang K., Xu F., Yuan W., Sun L., Wang S., Aslam M.M., Zhang J., Xu W.	G protein gamma subunit qPE9-1 is involved in rice adaptation under elevated CO2 concentration by regulating leaf photosynthesis.	Rice (N Y)	14(1)	67	2021		
50472	34299195	Min M.H., Maung T.Z., Cao Y., Phitaktansakul R., Lee G.S., Chu S.H., Kim K.W., Park Y.J.	Haplotype Analysis of <i>BADH1</i> by Next-Generation Sequencing Reveals Association with salt tolerance in Rice during Domestication.	Int J Mol Sci	22(14)		2021		
50473	34360691	He Y., Liu C., Zhu L., Fu M., Sun Y., Zeng H.	Jasmonic Acid Plays a Pivotal Role in pollen Development and Fertility Regulation in Different Types of P(T)GMS Rice Lines.	Int J Mol Sci	22(15)		2021		
50474	34286735	Bennett C., Sookwong P., Jakmunee J., Mahatheeranont S.	Smartphone digital image colorimetric determination of the total monomeric anthocyanin content in black rice via the pH differential method.	Anal Methods	13(30)	3348-3358	2021		
50475	34264372	Tanaka R., Mandaharisoa S.T., Rakotondramanana M., Ranaivo H.N., Pariasca-Tanaka J., Kajiya-Kanegae H., Iwata H., Wissuwa M.	From gene banks to farmer's fields: using genomic selection to identify donors for a breeding program in rice to close the yield gap on smallholder farms.	Theor. Appl. Genet.	134(10)	3397-3410	2021		
50476	34451561	Shabala S., Alnayef M., Bose J., Chen Z.H., Venkataraman G., Zhou M., Shabala L., Yu M.	Revealing the Role of the calcineurin B-like Protein-Interacting Protein Kinase 9 (CIPK9) in Rice Adaptive Responses to Salinity, Osmotic Stress, and K+ Deficiency.	Plants (Basel)	10(8)		2021		
50477	34265443	Li R., Char S.N., Liu B., Liu H., Li X., Yang B.	High-efficiency plastome base editing in rice with TAL cytosine deaminase.	Mol Plant	14(9)	1412-1414	2021		
50478	34281241	Park S.I., Kwon H.J., Cho M.H., Song J.S., Kim B.G., Baek J., Kim S.L., Ji H., Kwon T.R., Kim K.H., Yoon I.S.	The <i>OsERF115/AP2EREBP110</i> Transcription Factor Is Involved in the Multiple Stress Tolerance to Heat and Drought in Rice Plants.	Int J Mol Sci	22(13)		2021		
50479	34299327	Yang L., Cao H., Zhang X., Gui L., Chen Q., Qian G., Xiao J., Li Z.	Genome-Wide Identification and Expression Analysis of Tomato <i>ADK</i> Gene Family during Development and Stress.	Int J Mol Sci	22(14)		2021		
50480	34305980	Wang X., Li L., Sun X., Xu J., Ouyang L., Bian J., Chen X., Li W., Peng X., Hu L., Cai Y., Zhou D., He X., Fu J., Fu H., He H., Zhu C.	Fine Mapping of a Novel Major Quantitative Trait Locus, <i>qPAA7</i>, That Controls Panicle Apical Abortion in Rice.	Front Plant Sci	12	683329	2021		
50481	34235432	Zhang W., Kang Y., Dai X., Xu S., Zhao P.X.	PIP-SNP: a pipeline for processing SNP data featured as linkage disequilibrium bin mapping, genotype imputing and marker synthesizing.	NAR Genom Bioinform	3(3)	lqab060	2021		
50482	34216063	Wang K., Xu F., Yuan W., Zhang D., Liu J., Sun L., Cui L., Zhang J., Xu W.	Rice G protein gamma subunit qPE9-1 modulates root elongation for phosphorus uptake by involving 14-3-3 protein OsGF14b and plasma membrane H+ -ATPase.	Plant J.	107(6)	1603-1615	2021		
50483	34330009	Swain A., Behera D., Karmakar S., Dash M., Dash B.P., Swain P., Molla K.A., Baig M.J.	Morphophysiological alterations in transgenic rice lines expressing PPDK and ME genes from the C4 model Setaria italica.	J. Plant Physiol.	264	153482	2021		
50484	34290144	Ma Y., Lu H., Wang W., Zhu J., Zhao W., Cui F.	Membrane association of importin alpha facilitates viral entry into salivary gland cells of vector insects.	Proc. Natl. Acad. Sci. U.S.A.	118(30)		2021		
50485	34371676	Jeyasri R., Muthuramalingam P., Satish L., Pandian S.K., Chen J.T., Ahmar S., Wang X., Mora-Poblete F., Ramesh M.	An Overview of Abiotic Stress in Cereal Crops: Negative Impacts, Regulation, Biotechnology and Integrated Omics.	Plants (Basel)	10(7)		2021		
50486	34367222	Pantoja-Benavides AD., Garces-Varon G., Restrepo-D?az H.	Foliar Growth Regulator Sprays Induced Tolerance to Combined Heat Stress by Enhancing Physiological and Biochemical Responses in Rice.	Front Plant Sci	12	702892	2021		
50487	34217205	Huangfu Y., Pan J., Li Z., Wang Q., Mastouri F., Li Y., Yang S., Liu M., Dai S., Liu W.	Genome-wide identification of PTI1 family in Setaria italica and salinity-responsive functional analysis of SiPTI1-5.	BMC Plant Biol.	21(1)	319	2021		
50488	34224034	Cheng Q., Wang P., Wu G., Wang Y., Tan J., Li C., Zhang X., Liu S., Huang S., Huang T., Yang M., He H., Bian J.	Coordination of m6A mRNA methylation and gene transcriptome in rice response to cadmium stress.	Rice (N Y)	14(1)	62	2021		
50489	34271177	Zhou L., Zhu C., Fang X., Liu H., Zhong S., Li Y., Liu J., Song Y., Jian X., Lin Z.	Gene duplication drove the loss of awn in sorghum.	Mol Plant	14(11)	1831-1845	2021		
50490	34360743	Pashayeva A., Wu G., Huseynova I., Lee C.H., Zulfugarov I.S.	Role of Thylakoid Protein Phosphorylation in Energy-Dependent Quenching of Chlorophyll Fluorescence in Rice Plants.	Int J Mol Sci	22(15)		2021		
50491	34391677	Lv Z., Dai R., Xu H., Liu Y., Bai B., Meng Y., Li H., Cao X., Bai Y., Song X., Zhang J.	The rice histone methylation regulates hub species of the root microbiota.	J Genet Genomics	48(9)	836-843	2021		
50492	34271533	Yang S., Ulhassan Z., Shah A.M., Khan A.R., Azhar W., Hamid Y., Hussain S., Sheteiwy M.S., Salam A., Zhou W.	Salicylic acid underpins silicon in ameliorating chromium toxicity in rice by modulating antioxidant defense, ion homeostasis and cellular ultrastructure.	Plant Physiol. Biochem.	166	1001-1013	2021		
50493	34326854	Ouyang D., Dong S., Xiao M., You J., Zhao Y., Wang Y., Zhang W., Yang J., Song Z.	Compensation of Wild Plants Weakens the Effects of Crop-Wild Gene Flow on Wild Rice Populations.	Front Plant Sci	12	681008	2021		
50494	34440293	Alharbi B.M., Abdulmajeed A.M., Hassan H.	Biochemical and Molecular Effects Induced by Triacontanol in Acquired Tolerance of Rice to Drought Stress.	Genes (Basel)	12(8)		2021		
50495	33987653	Feng F., Zhan H., Wan Q., Wang Y., Li Y., Ge J., Sun X., Zhu H., Yu X.	Rice recruits Sphingomonas strain HJY-rfp via root exudate regulation to increase chlorpyrifos tolerance and boost residual catabolism.	J. Exp. Bot.	72(15)	5673-5686	2021		
50496	34289369	Luo W., Huan Q., Xu Y., Qian W., Chong K., Zhang J.	Integrated global analysis reveals a vitamin E-vitamin K1 sub-network, downstream of COLD1, underlying rice chilling tolerance divergence.	Cell Rep	36(3)	109397	2021		
50497	34299210	Kongdin M., Mahong B., Lee S.K., Shim S.H., Jeon J.S., Ketudat Cairns JR.	Action of Multiple Rice beta-Glucosidases on Abscisic Acid Glucose Ester.	Int J Mol Sci	22(14)		2021		
50498	34299608	Daras G., Templalexis D., Avgeri F., Tsitsekian D., Karamanou K., Rigas S.	Updating Insights into the Catalytic Domain Properties of Plant <i>Cellulose synthase</i> (<i>CesA</i>) and <i>Cellulose synthase-like</i> (<i>Csl</i>) Proteins.	Molecules	26(14)		2021		
50499	34214032	Chen Q., Liu Y., Ren J., Zhong P., Chen M., Jia D., Chen H., Wei T.	Exosomes mediate horizontal transmission of viral pathogens from insect vectors to plant phloem.	Elife	10		2021		
50500	34349792	Wang Y., Liu J., Meng Y., Liu H., Liu C., Ye G.	Rapid Identification of QTL for mesocotyl length in Rice Through Combining QTL-seq and Genome-Wide Association Analysis.	Front Genet	12	713446	2021		
50501	34229625	Li X., Liao M., Huang J., Xu Z., Lin Z., Ye N., Zhang Z., Peng X.	Glycolate oxidase-dependent H2O2 production regulates IAA biosynthesis in rice.	BMC Plant Biol.	21(1)	326	2021		
50502	34291710	He S., Kong L., Chen J.	iDNA6mA-Rice-DL: A local web server for identifying DNA N6-methyladenine sites in rice genome by deep learning method.	J Bioinform Comput Biol	19(5)	2150019	2021		
50503	34288868	Bia?as A., Langner T., Harant A., Contreras M.P., Stevenson C.E., Lawson D.M., Sklenar J., Kellner R., Moscou M.J., Terauchi R., Banfield M.J., Kamoun S.	Two NLR immune receptors acquired high-affinity binding to a fungal effector through convergent evolution of their integrated domain.	Elife	10		2021		
50504	34234106	Xie Z., Yu G., Lei S., Zhang C., Bin Xu, Huang B.	CCCH protein-PvCCCH69 acted as a repressor for leaf senescence through suppressing ABA-signaling pathway.	Hortic Res	8(1)	165	2021		
50505	34287681	Singh R.K., Kota S., Flowers T.J.	salt tolerance in rice: seedling and reproductive stage QTL mapping come of age.	Theor. Appl. Genet.	134(11)	3495-3533	2021		
50506	34264991	Kale R.R., Durga Rani CV., Anila M., Mahadeva Swamy HK., Bhadana V.P., Senguttuvel P., Subrahmanyam D., Ayyappa Dass M., Swapnil K., Anantha M.S., Punniakotti E., Prasanna B.L., Rekha G., Sinha P., Kousik MBVN., Dilip T., Hajira S.K., Brajendra P., Mangrauthia S.K., Gireesh C., Tuti M., Mahendrakumar R., Giri J., Singh P., Sundaram R.M.	Novel major QTLs associated with low soil phosphorus tolerance identified from the Indian rice landrace, Wazuhophek.	PLoS ONE	16(7)	e0254526	2021		
50507	33821947	Clerget B., Sidibe M., Bueno C.S., Grenier C., Kawakata T., Domingo A.J., Layaoen H.L., Guti?rrez-Palacios ND., Bernal J.H., Trouche G., Chantereau J.	Crop photoperiodism model 2.0 for the flowering time of sorghum and rice that includes daily changes in sunrise and sunset times and temperature acclimation.	Ann. Bot.	128(1)	97-113	2021		
50508	34130836	Pan D., Liu C., Yi J., Li X., Li F.	Different effects of foliar application of silica sol on arsenic translocation in rice under low and high arsenite stress.	J Environ Sci (China)	105	22-32	2021		
50509	34270569	Khan S., Basit A., Hafeez M.B., Irshad S., Bashir S., Bashir S., Maqbool M.M., Saddiq M.S., Hasnain Z., Aljuaid B.S., El-Shehawi AM., Li Y.	Moringa leaf extract improves biochemical attributes, yield and grain quality of rice (Oryza sativa L.) under drought stress.	PLoS ONE	16(7)	e0254452	2021		
50510	34371626	Ali I., Tang L., Dai J., Kang M., Mahmood A., Wang W., Liu B., Liu L., Cao W., Zhu Y.	Responses of grain yield and Yield Related Parameters to Post-Heading Low-Temperature Stress in <i>Japonica</i> Rice.	Plants (Basel)	10(7)		2021		
50511	34211096	Roy S., Verma B.C., Banerjee A., Kumar J., Ray U.S., Mandal N.P.	Genetic diversity for drought and low-phosphorus tolerance in rice (Oryza sativa L.) varieties and donors adapted to rainfed drought-prone ecologies.	Sci Rep	11(1)	13671	2021		
50512	34215178	Zhang X., He Q., Zhang W., Shu F., Wang W., He Z., Xiong H., Peng J., Deng H.	Genetic relationships and identification of core germplasm among rice photoperiod- and thermo-sensitive genic male sterile lines.	BMC Plant Biol.	21(1)	313	2021		
50513	34312681	Shi J., Shi J., Liang W., Zhang D.	Integrating GWAS and transcriptomics to identify genes involved in seed dormancy in rice.	Theor. Appl. Genet.	134(11)	3553-3562	2021		
50514	34237377	Liu C., Peng P., Li W., Ye C., Zhang S., Wang R., Li D., Guan S., Zhang L., Huang X., Guo Z., Guo J., Long Y., Li L., Pan G., Tian B., Xiao J.	Deciphering variation of 239 elite japonica rice genomes for whole genome sequences-enabled breeding.	Genomics	113(5)	3083-3091	2021		
50515	34322138	Chen K., ?yskowski A., Jaremko ?., Jaremko M.	Genetic and Molecular Factors Determining grain weight in Rice.	Front Plant Sci	12	605799	2021		
50516	34236836	Wan J., Wu Y., Pham Q., Li R.W., Yu L., Chen M.H., Boue S.M., Yokoyama W., Li B., Wang T.T.Y.	Effects of Differences in Resistant Starch Content of Rice on Intestinal Microbial Composition.	J. Agric. Food Chem.	69(28)	8017-8027	2021		
50517	34279738	Takafuji Y., Shimizu-Sato S., Ta K.N., Suzuki T., Nosaka-Takahashi M., Oiwa T., Kimura W., Katoh H., Fukai M., Takeda S., Sato Y., Hattori T.	High-resolution spatiotemporal transcriptome analyses during cellularization of rice endosperm unveil the earliest gene regulation critical for aleurone and starchy endosperm cell fate specification.	J. Plant Res.	134(5)	1061-1081	2021		
50518	34367213	Zheng C., Liu Y., Sun F., Zhao L., Zhang L.	Predicting protein-protein Interactions Between Rice and Blast Fungus Using Structure-Based Approaches.	Front Plant Sci	12	690124	2021		
50519	34196662	Osnato M., Lacchini E., Pilatone A., Dreni L., Grioni A., Chiara M., Horner D., Pelaz S., Kater M.M.	Corrigendum to: Transcriptome analysis reveals rice MADS13 as an important repressor of the carpel development pathway in ovules.	J. Exp. Bot.	72(15)	5784	2021		
50520	34484259	Bhavanam S., Stout M.	Seed Treatment With Jasmonic Acid and Methyl Jasmonate Induces Resistance to Insects but Reduces Plant Growth and Yield in Rice, <i>Oryza sativa</i>.	Front Plant Sci	12	691768	2021		
50521	34458063	Prashantha S.T., Bashyal B.M., Krishnan S.G., Dubey H., Solanke A.U., Prakash G., Aggarwal R.	Identification and expression analysis of pathogenicity-related genes of <i>Rhizoctonia solani</i> anastomosis groups infecting rice.	3 Biotech	11(8)	394	2021		
50522	34547656	Mishra V., Singh V.P.	Implication of nitric oxide and hydrogen sulfide signalling in alleviating arsenate stress in rice seedlings.	Environ. Pollut.	291	117958	2021		
50523	34302368	Kuhla J., Pausch J., Schaller J.	Effect on soil water availability, rather than silicon uptake by plants, explains the beneficial effect of silicon on rice during drought.	Plant Cell Environ.	44(10)	3336-3346	2021		
50524	34527014	Li Y., Wang L.F., Bhutto S.H., He X.R., Yang X.M., Zhou X.H., Lin X.Y., Rajput A.A., Li G.B., Zhao J.H., Zhou S.X., Ji Y.P., Pu M., Wang H., Zhao Z.X., Huang Y.Y., Zhang J.W., Qin P., Fan J., Wang W.M.	Blocking miR530 Improves Rice Resistance, Yield, and Maturity.	Front Plant Sci	12	729560	2021	MIR530	miR530, Osa-miR530, OsmiR530, osa-MIR530, osa-miR530 osa-miR530-3p, osa-miR530-5p
50525	34337676	Kuang Y.H., Fang Y.F., Lin S.C., Tsai S.F., Yang Z.W., Li C.P., Huang S.H., Hechanova S.L., Jena K.K., Chuang W.P.	The Impact of Climate Change on the Resistance of Rice Near-Isogenic Lines with Resistance Genes Against Brown Planthopper.	Rice (N Y)	14(1)	64	2021		
50526	34349182	Senguttuvel P., Sravanraju N., Jaldhani V., Divya B., Beulah P., Nagaraju P., Manasa Y., Prasad A.S.H., Brajendra P., Gireesh C., Anantha M.S., Suneetha K., Sundaram R.M., Madhav M.S., Tuti M.D., Subbarao L.V., Neeraja C.N., Bhadana V.P., Rao P.R., Voleti S.R., Subrahmanyam D.	Evaluation of genotype by environment interaction and adaptability in lowland irrigated rice hybrids for grain yield under high temperature.	Sci Rep	11(1)	15825	2021		
50527	34383135	Li H., Li A., Shen W., Ye N., Wang G., Zhang J.	Global Survey of Alternative Splicing in Rice by Direct RNA Sequencing During Reproductive Development: Landscape and Genetic Regulation.	Rice (N Y)	14(1)	75	2021		
50528	34451761	Fongfon S., Prom-U-Thai C., Pusadee T., Jamjod S.	Responses of Purple Rice Genotypes to Nitrogen and Zinc Fertilizer Application on grain yield, Nitrogen, Zinc, and Anthocyanin Concentration.	Plants (Basel)	10(8)		2021		
50529	34245626	Kerr S.C., Patil S.B., de Saint Germain A., Pillot J.P., Saffar J., Ligerot Y., Aubert G., Citerne S., Bellec Y., Dun E.A., Beveridge C.A., Rameau C.	Integration of the SMXL/D53 strigolactone signalling repressors in the model of shoot branching regulation in Pisum sativum.	Plant J.	107(6)	1756-1770	2021		
50530	34396669	Cao H., Gong R., Yuan S., Su Y., Lv W., Zhou Y., Zhang Q., Deng X., Tong P., Liang S., Wang X., Hong Y.	Phospholipase Dalpha6 and phosphatidic acid regulate gibberellin signaling in rice.	EMBO Rep.	22(10)	e51871	2021		
50531	34365290	Siddiqui Z.S., Oh S.D., Kim E.J., Jang Y.J., Lee S.K., Yun D.W., Kwon T.R., Wajid D., Ansari H.H., Park S.C., Cho J.I.	Physiological and photochemical evaluation of pepper methionine sulfoxide reductase B2 (CaMsrB2) expressing transgenic rice in saline habitat.	Plant Physiol. Biochem.	167	198-209	2021		
50532	34403886	Wang Y., Liu M., Wang X., Zhong L., Shi G., Xu Y., Li Y., Li R., Huang Y., Ye X., Li Z., Cui Z.	A novel beta-1,3-glucanase Gns6 from rice possesses antifungal activity against Magnaporthe oryzae.	J. Plant Physiol.	265	153493	2021		
50533	34451704	Badawy S.A., Zayed B.A., Bassiouni S.M.A., Mahdi A.H.A., Majrashi A., Ali E.F., Seleiman M.F.	Influence of Nano Silicon and Nano Selenium on Root Characters, Growth, Ion Selectivity, Yield, and Yield Components of Rice (<i>Oryza sativa</i> L.) under Salinity Conditions.	Plants (Basel)	10(8)		2021		
50534	34353280	Zhao L., Zhao C., Zhou L., Zhao Q., Zhu Z., Chen T., Yao S., Zhang Y., Wang C.	QTL mapping for starch paste viscosity of rice (Oryza sativa L.) using chromosome segment substitution lines derived from two sequenced cultivars with the same Wx allele.	BMC Genomics	22(1)	596	2021		
50535	34421955	Zhang O., Liang C., Yang B., You H., Xu L., Chen Y., Xiang X.	Effects of Starch Synthesis-Related Genes Polymorphism on Quality of Glutinous Rice.	Front Plant Sci	12	707992	2021		
50536	34497591	Niu X., Yang G., Lin H., Liu Y., Li P., Zheng A.	A Novel, Small Cysteine-Rich Effector, RsSCR10 in <i>Rhizoctonia solani</i> Is Sufficient to Trigger Plant Cell Death.	Front Microbiol	12	684923	2021		
50537	34436705	Thakur T., Gandass N., Mittal K., Jamwal P., Muthamilarasan M., Salvi P.	A rapid, efficient, and low-cost BiFC protocol and its application in studying in vivo interaction of seed-specific transcription factors, RISBZ and RPBF.	Funct. Integr. Genomics	21(5-6)	593-603	2021		
50538	34620438	Chai W., Song N., Su A., Wang J., Si W., Cheng B., Jiang H.	ZmmiR190 and its target regulate plant responses to drought stress through an ABA-dependent pathway.	Plant Sci.	312	111034	2021		
50539	34365749	Anato V.K.S., Agnoun Y., Houndjo J., Oludare A., Agbangla C., Akoroda M., Adetimirin V.O.	Resistance of Oryza sativa and Oryza glaberrima Genotypes to RBe24 Isolate of Rice Yellow Mottle Virus in Benin and Effects of Silicon on Host Response.	Plant Pathol. J.	37(4)	375-388	2021		
50540	34387704	de Siqueira KA., Senabio J.A., Pietro-Souza W., de Oliveira Mendes TA., Soares M.A.	Aspergillus sp. A31 and Curvularia geniculata P1 mitigate mercury toxicity to Oryza sativa L.	Arch. Microbiol.	203(9)	5345-5361	2021		
50541	34219386	Liu X., Zhang X., Cao R., Jiao G., Hu S., Shao G., Sheng Z., Xie L., Tang S., Wei X., Hu P.	cde4 encodes a pentatricopeptide repeat protein involved in chloroplast RNA splicing and affects chloroplast development under low-temperature conditions in rice.	J Integr Plant Biol	63(10)	1724-1739	2021		
50542	34504507	Maung T.Z., Yoo J.M., Chu S.H., Kim K.W., Chung I.M., Park Y.J.	Haplotype Variations and Evolutionary Analysis of the Granule-Bound Starch Synthase I Gene in the Korean World Rice Collection.	Front Plant Sci	12	707237	2021		
50543	34426588	Carlessi M., Mariotti L., Giaume F., Fornara F., Perata P., Gonzali S.	Targeted knockout of the gene OsHOL1 removes methyl iodide emissions from rice plants.	Sci Rep	11(1)	17010	2021		
50544	34374880	Mao T., Zhu M., Sheng Z., Shao G., Jiao G., Mawia A.M., Ahmad S., Xie L., Tang S., Wei X., Hu S., Hu P.	Effects of grain shape Genes Editing on Appearance Quality of Erect-Panicle Geng/Japonica Rice.	Rice (N Y)	14(1)	74	2021		
50545	34411726	Duan P., Li Y.	Size matters: G protein signaling is crucial for grain size control in rice.	Mol Plant	14(10)	1618-1620	2021		
50546	34376793	Imaizumi T., Ebana K., Kawahara Y., Muto C., Kobayashi H., Koarai A., Olsen K.M.	Genomic divergence during feralization reveals both conserved and distinct mechanisms of parallel weediness evolution.	Commun Biol	4(1)	952	2021		
50547	34398447	Verma H., Sarma R.N.	Identification of Markers for Root Traits Related to drought tolerance Using Traditional Rice Germplasm.	Mol. Biotechnol.	63(12)	1280-1292	2021		
50548	34421978	Li G.B., Fan J., Wu J.L., He J.X., Liu J., Shen S., Gishkori Z.G.N., Hu X.H., Zhu Y., Zhou S.X., Ji Y.P., Pu M., Zhao J.H., Zhao Z.X., Wang H., Zhang J.W., Huang Y.Y., Li Y., Huang F., Wang W.M.	The Flower-Infecting Fungus <i>Ustilaginoidea virens</i> Subverts Plant Immunity by Secreting a Chitin-Binding Protein.	Front Plant Sci	12	733245	2021		
50549	34339605	Weigle A.T., Carr M., Shukla D.	Impact of Increased Membrane Realism on Conformational Sampling of Proteins.	J Chem Theory Comput	17(8)	5342-5357	2021		
50550	34413871	Wang X., Li J., Li F., Pan Y., Cai D., Mao D., Chen L., Luan S.	Rice Potassium Transporter OsHAK8 Mediates K+ Uptake and Translocation in Response to Low K+ Stress.	Front Plant Sci	12	730002	2021		
50551	34571705	Zhu Y.Q., Fang J., Wang Y., Pang L.H., Lu B.R.	Key Roles of De-Domestication and Novel Mutation in Origin and Diversification of Global Weedy Rice.	Biology (Basel)	10(9)		2021		
50552	34245650	Su S., Hong J., Chen X., Zhang C., Chen M., Luo Z., Chang S., Bai S., Liang W., Liu Q., Zhang D.	Gibberellins orchestrate panicle architecture mediated by DELLA-KNOX signalling in rice.	Plant Biotechnol. J.	19(11)	2304-2318	2021		
50553	34357443	Zhang S., Hao H., Liu X., Li Y., Ma X., Liu W., Zheng R., Liang S., Luan W.	SDG712, a Putative H3K9-Specific Methyltransferase Encoding Gene, Delays Flowering through Repressing the Expression of Florigen Genes in Rice.	Rice (N Y)	14(1)	73	2021		
50554	34245484	Chen X., Xu Q., Duan Y., Liu H., Chen X., Huang J., Luo C., Zhou D.X., Zheng L.	Ustilaginoidea virens modulates lysine 2-hydroxyisobutyrylation in rice flowers during infection.	J Integr Plant Biol	63(10)	1801-1814	2021		
50555	34441728	Gondal T.A., Keast R.S.J., Shellie R.A., Jadhav S.R., Gamlath S., Mohebbi M., Liem D.G.	Consumer Acceptance of Brown and White Rice Varieties.	Foods	10(8)		2021		
50556	34527011	Wang X., Wang K., Yin T., Zhao Y., Liu W., Shen Y., Ding Y., Tang S.	Nitrogen Fertilizer Regulated grain storage protein Synthesis and Reduced Chalkiness of Rice Under Actual Field Warming.	Front Plant Sci	12	715436	2021		
50557	34387795	Zhang L., Li N., Zhang J., Zhao L., Qiu J., Wei C.	The CBM48 domain-containing protein FLO6 regulates starch synthesis by interacting with SSIVb and GBSS in rice.	Plant Mol. Biol.			2021	FLO6	OsSIP4, SIP4, OsFLO6, OsSFq3, SFq3
50558	34557392	Mohanavel V., Yesudhas A.S., Sharma A., Ramasamy A., Muthu Arjuna Samy P., Subramanian M., Muthusamy R.	Haplotype and diversity analysis of indigenous rice for salinity tolerance in early-stage seedling using simple sequence repeat markers.	Biotechnol Rep (Amst)	31	e00666	2021		
50559	34339211	Wang M., Guo W., Li J., Pan X., Pan L., Zhao J., Zhang Y., Cai S., Huang X., Wang A., Liu Q.	The miR528-<i>AO</i> Module Confers Enhanced salt tolerance in Rice by Modulating the Ascorbic Acid and Abscisic Acid Metabolism and ROS Scavenging.	J. Agric. Food Chem.	69(31)	8634-8648	2021		
50560	34376143	Zhong H., Liu S., Sun T., Kong W., Deng X., Peng Z., Li Y.	Multi-locus genome-wide association studies for five yield-related traits in rice.	BMC Plant Biol.	21(1)	364	2021		
50561	34969457	Sun C., Liang X., Gong X., Chen H., Liu X., Zhang S., Li F., Zhao J., Yi J.	Comparative transcriptomics provide new insights into the mechanisms by which foliar silicon alleviates the effects of cadmium exposure in rice.	J Environ Sci (China)	115	294-307	2022		
50562	34420356	Wang P., Wang S., Wu Y., Nie W., Yiming A., Huang J., Ahmad I., Zhu B., Chen G.	Identification and characterization of rice circular RNAs responding to Xanthomonas oryzae pv. oryzae invasion.	Phytopathology			2021		
50563	34260062	Ji R., Fu J., Shi Y., Li J., Jing M., Wang L., Yang S., Tian T., Wang L., Ju J., Guo H., Liu B., Dou D., Hoffmann A.A., Zhu-Salzman K., Fang J.	Vitellogenin from planthopper oral secretion acts as a novel effector to impair plant defenses.	New Phytol.	232(2)	802-817	2021		
50564	34389910	He Y., Zhang Y., Liao Y., Dennis E.S., Peacock W.J., Wu X.	Rice hybrid mimics have stable yields equivalent to those of the F1 hybrid and suggest a basis for hybrid vigour.	Planta	254(3)	51	2021		
50565	34421977	Park M., Choi W., Shin S.Y., Moon H., Lee D., Gho Y.S., Jung K.H., Jeon J.S., Shin C.	Identification of Genes and MicroRNAs Affecting Pre-harvest Sprouting in Rice (<i>Oryza sativa</i> L.) by Transcriptome and Small RNAome Analyses.	Front Plant Sci	12	727302	2021		
50566	34331498	Wu X., Chen Y., Li C., Zhang X., Tan X., Lv L., Liu Y., Zhang D.	GroEL protein from the potential biocontrol agent Rhodopseudomonas palustris enhances resistance to rice blast disease.	Pest Manag. Sci.	77(12)	5445-5453	2021		
50567	34566458	Yamamoto S., Tanetani Y., Uchiyama C., Nagamatsu A., Kobayashi M., Ikeda M., Kawai K.	Mechanism of action and selectivity of a novel herbicide, fenquinotrione.	Journal of Pesticide Science	46(3)	249-257	2021		
50568	34437620	Klink V.P., Darwish O., Alkharouf N.W., Lawaju B.R., Khatri R., Lawrence K.S.	Conserved oligomeric Golgi (COG) complex genes functioning in defense are expressed in root cells undergoing a defense response to a pathogenic infection and exhibit regulation my MAPKs.	PLoS ONE	16(8)	e0256472	2021		
50569	34566459	Park J.H., Jung S.	Alleviation of norflurazon-induced photobleaching by overexpression of Fe-chelatase in transgenic rice.	Journal of Pesticide Science	46(3)	258-266	2021		
50570	34451754	Lee J.S., Chebotarov D., McNally K.L., Pede V., Setiyono T.D., Raquid R., Hyun W.J., Jeung J.U., Kohli A., Mo Y.	Novel Sources of Pre-Harvest Sprouting Resistance for Japonica Rice Improvement.	Plants (Basel)	10(8)		2021		
50571	34421961	Huang M., Yin X., Chen J., Cao F.	Biochar Application Mitigates the Effect of Heat Stress on Rice (<i>Oryza sativa</i> L.) by Regulating the Root-Zone Environment.	Front Plant Sci	12	711725	2021		
50572	34418855	Tang B., Chen J., Wang Z., Qin P., Zhang X.	Mercury accumulation response of rice plant (Oryza sativa L.) to elevated atmospheric mercury and carbon dioxide.	Ecotoxicol. Environ. Saf.	224	112628	2021		
50573	34531884	Zhao C., Xu W., Li H., Dai W., Zhang Z., Qiang S., Song X.	The Rapid Cytological Process of Grain Determines Early Maturity in Weedy Rice.	Front Plant Sci	12	711321	2021		
50574	34384368	Yang X., Song B., Cui J., Wang L., Wang S., Luo L., Gao L., Mo B., Yu Y., Liu L.	Comparative ribosome profiling reveals distinct translational landscapes of salt-sensitive and -tolerant rice.	BMC Genomics	22(1)	612	2021		
50575	34455446	Matsushima C., Shenton M., Kitahara A., Wasaki J., Oikawa A., Cheng W., Ikeo K., Tawaraya K.	Multiple analysis of root exudates and microbiome in rice (Oryza sativa) under low P conditions.	Arch. Microbiol.	203(9)	5599-5611	2021		
50576	34512678	Panahabadi R., Ahmadikhah A., McKee L.S., Ingvarsson P.K., Farrokhi N.	Genome-Wide Association Mapping of Mixed Linkage (1,3;1,4)-beta-Glucan and Starch Contents in Rice Whole Grain.	Front Plant Sci	12	665745	2021		
50577	34912176	Ota Y., Matsumoto K., Nakayama Y., Yamakawa T., Ohno T., Mizobuchi R., Sato H.	QTL analysis for brown spot resistance in American rice cultivar 'Dawn'.	Breed. Sci.	71(4)	491-495	2021		
50578	34347189	Zhou C., Liu X., Li X., Zhou H., Wang S., Yuan Z., Zhang Y., Li S., You A., Zhou L., He Z.	A Genome Doubling Event Reshapes Rice Morphology and Products by Modulating Chromatin Signatures and Gene Expression Profiling.	Rice (N Y)	14(1)	72	2021		
50579	34342723	Wu L., Rong H., Chen C., Lin X., Wang J., Xiao W., Huang C., Guo T., Wang H., Huang M.	Characteristics of Fertility Transition Response to the Cumulative Effective Low Temperature in a Two-Line Male Sterile Rice Cultivar.	Rice (N Y)	14(1)	71	2021		
50580	34388987	Yu J., Liu C., Lin H., Zhang B., Li X., Yuan Q., Liu T., He H., Wei Z., Ding S., Zhang C., Gao H., Guo L., Wang Q., Qian Q., Shang L.	Loci and natural alleles for cadmium-mediated growth responses revealed by a genome wide association study and transcriptome analysis in rice.	BMC Plant Biol.	21(1)	374	2021		
50581	34841357	Panneerselvam P., Saha S., Senapati A., Nayak A.K., Kumar U., Mitra D.	New generation post-emergence herbicides and their impact on arbuscular mycorrhizae fungal association in rice.	Curr Res Microb Sci	2	100067	2021		
50582	34390118	Zhang L., Liu W., Zhang X., Li L., Wang X.	Southern rice black-streaked dwarf virus hijacks SNARE complex of its insect vector for its effective transmission to rice.	Mol. Plant Pathol.	22(10)	1256-1270	2021		
50583	34334124	Yamamoto K., Momonoki Y.S.	Identification and molecular characterization of propionylcholinesterase, a novel pseudocholinesterase in rice.	Plant Signal Behav	16(11)	1961062	2021		
50584	34310794	Haas M., Kono T., Macchietto M., Millas R., McGilp L., Shao M., Duquette J., Qiu Y., Hirsch C.N., Kimball J.	Whole-genome assembly and annotation of northern wild rice, Zizania palustris L., supports a whole-genome duplication in the Zizania genus.	Plant J.	107(6)	1802-1818	2021		
50585	34566461	Nakagawa Y., Nishikawa B., Miyagawa H.	Effects of brassinolide on the growing of rice plants.	Journal of Pesticide Science	46(3)	274-277	2021		
50586	34584089	Zhang J., Zhang D., Fan Y., Li C., Xu P., Li W., Sun Q., Huang X., Zhang C., Wu L., Yang H., Wang S., Su X., Li X., Song Y., Wu M.E., Lian X., Li Y.	The identification of grain size genes by RapMap reveals directional selection during rice domestication.	Nat Commun	12(1)	5673	2021		
50587	34571424	Wei W., Peng H., Xie Y., Wang X., Huang R., Chen H., Ji X.	The role of silicon in cadmium alleviation by rice root cell wall retention and vacuole compartmentalization under different durations of Cd exposure.	Ecotoxicol. Environ. Saf.	226	112810	2021		
50588	34527828	Shrestha J., Subedi S., Singh Kushwaha UK., Maharjan B.	Evaluation of growth and yield traits in rice genotypes using multivariate analysis.	Heliyon	7(9)	e07940	2021		
50589	34536132	Luan X., Xiong L., Xu H., Zhu H., Bu S., Meng L., Liu G., Wang S.	Functional mapping of tillering QTLs using the Wang-Lan-Ding model and a SSSL population.	Mol. Genet. Genomics	296(6)	1279-1286	2021		
50590	34591082	Shanmugam T., Streit D., Schroll F., Kovacevic J., Schleiff E.	Dynamics and thermal sensitivity of ribosomal RNA maturation paths in plants.	J. Exp. Bot.			2021		
50591	34448351	Xu Y., Kong W., Wang F., Wang J., Tao Y., Li W., Chen Z., Fan F., Jiang Y., Zhu Q.H., Yang J.	Heterodimer formed by ROC8 and ROC5 modulates leaf rolling in rice.	Plant Biotechnol. J.	19(12)	2662-2672	2021		
50592	34713268	Sretenovic S., Liu S., Li G., Cheng Y., Fan T., Xu Y., Zhou J., Zheng X., Coleman G., Zhang Y., Qi Y.	Exploring C-To-G Base Editing in Rice, Tomato, and Poplar.	Front Genome Ed	3	756766	2021		
50593	34494175	Peng M., Lin X., Xiang X., Ren H., Fan X., Chen K.	Characterization and Evaluation of Transgenic Rice Pyramided with the Pi genes Pib, Pi25 and Pi54.	Rice (N Y)	14(1)	78	2021		
50594	34579603	Das S., Majumder B., Biswas A.K.	Selenium alleviates arsenic induced stress by modulating growth, oxidative stress, antioxidant defense and thiol metabolism in rice seedlings.	Int J Phytoremediation		1-15	2021		
50595	34554387	Mehmood S., Ud Din I., Ullah I., Mohamed H.I., Basit A., Khan M.N., Hussain Shah SS., Ur Rehman A.	Agro-morphological and genetic diversity studies in Rice (Oryza sativa L.) germplasm using microsatellite markers.	Mol. Biol. Rep.	48(11)	7179-7192	2021		
50596	34562666	Guo M., Ruan W., Zhang Y., Zhang Y., Wang X., Guo Z., Wang L., Zhou T., Paz-Ares J., Yi K.	A reciprocal inhibitory module for Pi and iron signaling.	Mol Plant	15(1)	138-150	2022		
50597	34621256	Dong H., Fan S., Sun H., Chen C., Wang A., Jiang L., Ma D.	Rhizosphere-Associated Microbiomes of Rice (<i>Oryza sativa</i> L.) Under the Effect of Increased Nitrogen Fertilization.	Front Microbiol	12	730506	2021		
50598	34536500	Akabane T., Suzuki N., Tsuchiya W., Yoshizawa T., Matsumura H., Hirotsu N., Katoh E.	Expression, purification and crystallization of TGW6, which limits grain weight in rice.	Protein Expr. Purif.	188	105975	2021		
50599	34629780	Bamagoos A., Alharby H., Fahad S.	Biochar coupling with phosphorus fertilization modifies antioxidant activity, osmolyte accumulation and reactive oxygen species synthesis in the leaves and xylem sap of rice cultivars under high-temperature stress.	Physiol Mol Biol Plants	27(9)	2083-2100	2021		
50600	34567038	Nguyen T.V., Gupta R., Annas D., Yoon J., Kim Y.J., Lee G.H., Jang J.W., Park K.H., Rakwal R., Jung K.H., Min C.W., Kim S.T.	An Integrated Approach for the Efficient Extraction and Solubilization of Rice Microsomal Membrane Proteins for High-Throughput Proteomics.	Front Plant Sci	12	723369	2021		
50601	34487790	van den Berg B., Pedebos C., Bolla J.R., Robinson C.V., Basl? A., Khalid S.	Structural Basis for Silicic Acid Uptake by Higher Plants.	J. Mol. Biol.	433(21)	167226	2021		
50602	34563886	Guo J., Xie S., Huang Y., Chen M., Wang G.	Effects and mechanisms of Cd remediation with zeolite in brown rice (Oryza sativa).	Ecotoxicol. Environ. Saf.	226	112813	2021		
50603	34469461	Tang H., Li C., Shi L., Xiao X., Cheng K., Wen L., Li W.	Effect of different long-term fertilizer managements on soil nitrogen fixing bacteria community in a double-cropping rice paddy field of southern China.	PLoS ONE	16(9)	e0256754	2021		
50604	34493227	Chen J., Zhong Y., Qi X.	LncRNA TCONS_00021861 is functionally associated with drought tolerance in rice (Oryza sativa L.) via competing endogenous RNA regulation.	BMC Plant Biol.	21(1)	410	2021		
50605	34603346	Sabbioni G., Funck D., Forlani G.	Enzymology and Regulation of delta1-Pyrroline-5-Carboxylate Synthetase 2 From Rice.	Front Plant Sci	12	672702	2021		
50606	34650582	Byun M.Y., Cui L.H., Lee A., Oh H.G., Yoo Y.H., Lee J., Kim W.T., Lee H.	Abiotic Stress-Induced <i>Actin-Depolymerizing Factor 3</i> From <i>Deschampsia antarctica</i> Enhanced cold tolerance When Constitutively Expressed in Rice.	Front Plant Sci	12	734500	2021		
50607	34567026	Huang X., Zhang Y., Wang L., Dong X., Hu W., Jiang M., Chen G., An G., Xiong F., Wu Y.	<i>OsDOF11</i> Affects Nitrogen Metabolism by Sucrose Transport Signaling in Rice (<i>Oryza sativa</i> L.).	Front Plant Sci	12	703034	2021		
50608	34607207	Ding M., Zhang M., Zeng H., Hayashi Y., Zhu Y., Kinoshita T.	Molecular basis of plasma membrane H+-ATPase function and potential application in the agricultural production.	Plant Physiol. Biochem.	168	10-16	2021		
50609	34533651	Zhang J., Lu Z., Ren T., Cong R., Lu J., Li X.	Metabolomic and Transcriptomic Changes Induced by Potassium Deficiency During Sarocladium oryzae Infection Reveal Insights into Rice Sheath Rot Disease Resistance.	Rice (N Y)	14(1)	81	2021		
50610	34498290	Singh G., Sarkar N.K., Grover A.	Hsp70, sHsps and ubiquitin proteins modulate HsfA6a-mediated Hsp101 transcript expression in rice (Oryza sativa L.).	Physiol Plant	173(4)	2055-2067	2021		
50611	34630847	Liu J., Wu Q., Yang T., Yang F., Guo T., Zhou Y., Han S., Luo Y., Guo T., Luo F., Lin Q.	Bioactive Peptide F2d Isolated from Rice Residue Exerts Antioxidant Effects via Nrf2 Signaling Pathway.	Oxid Med Cell Longev	2021	2637577	2021		
50612	34638888	Pang Y., Hu Y., Bao J.	Comparative Phosphoproteomic Analysis Reveals the Response of Starch Metabolism to High-Temperature Stress in Rice Endosperm.	Int J Mol Sci	22(19)		2021		
50613	34782824	Miyazaki K., Ohkubo Y., Yasui H., Tashiro R., Suzuki R., Teramura H., Kusano H., Shimada H.	Overexpression of rice OsLEA5 relieves the deterioration in seed quality caused by high-temperature stress.	Plant Biotechnol (Tokyo)	38(3)	367-371	2021		
50614	34510797	Cruz M., Arbelaez J.D., Loaiza K., Cuasquer J., Rosas J., Graterol E.	Genetic and phenotypic characterization of rice grain quality traits to define research strategies for improving rice milling, appearance, and cooking qualities in Latin America and the Caribbean.	Plant Genome	14(3)	e20134	2021		
50615	34502462	Zheng S., Ye C., Lu J., Liufu J., Lin L., Dong Z., Li J., Zhuang C.	Improving the Rice Photosynthetic Efficiency and Yield by Editing <i>OsHXK1</i> via CRISPR/Cas9 System.	Int J Mol Sci	22(17)		2021		
50616	34534595	Sharma A., Vishwakarma K., Singh N.K., Prakash V., Ramawat N., Prasad R., Sahi S., Singh V.P., Tripathi D.K., Sharma S.	Synergistic action of silicon nanoparticles and indole acetic acid in alleviation of chromium (CrVI) toxicity in Oryza sativa seedlings.	J. Biotechnol.	343	71-82	2022		
50617	34473798	Janaki Ramayya P., Vinukonda V.P., Singh U.M., Alam S., Venkateshwarlu C., Vipparla A.K., Dixit S., Yadav S., Abbai R., Badri J., T R., Phani Padmakumari A., Singh V.K., Kumar A.	Marker-assisted forward and backcross breeding for improvement of elite Indian rice variety Naveen for multiple biotic and abiotic stress tolerance.	PLoS ONE	16(9)	e0256721	2021		
50618	34542712	Zhao J., Zhang W., da Silva JAT., Liu X., Duan J.	Rice histone deacetylase HDA704 positively regulates drought and salt tolerance by controlling stomatal aperture and density.	Planta	254(4)	79	2021		
50619	34629783	Gupta D.R., Khanom S., Rohman M.M., Hasanuzzaman M., Surovy M.Z., Mahmud N.U., Islam M.R., Shawon A.R., Rahman M., Abd-Elsalam KA., Islam T.	Hydrogen peroxide detoxifying enzymes show different activity patterns in host and non-host plant interactions with <i>Magnaporthe oryzae Triticum</i> pathotype.	Physiol Mol Biol Plants	27(9)	2127-2139	2021		
50620	34498544	Fang X., Bo C., Wang M., Yuan H., Li W., Chen H., Ma Q., Cai R.	Overexpression of the maize <i>WRKY114</i> gene in transgenic rice reduce plant height by regulating the biosynthesis of GA.	Plant Signal Behav	16(11)	1967635	2021		
50621	34521909	Cheng Y.C., Li G., Yin M., Adegoke T.V., Wang Y.F., Tong X.H., Zhang J., Ying J.Z.	Verification and dissection of one quantitative trait locus for grain size and weight on chromosome 1 in rice.	Sci Rep	11(1)	18252	2021		
50622	34449900	Jha V., Narjala A., Basu D., T N S., Pachamuthu K., Chenna S., Nair A., Shivaprasad P.V.	Essential role of gamma-clade RNA-dependent RNA polymerases in rice development and yield-related traits is linked to their atypical polymerase activities regulating specific genomic regions.	New Phytol.	232(4)	1674-1691	2021		
50623	34509640	Yuan H., Cao G., Hou X., Huang M., Du P., Tan T., Zhang Y., Zhou H., Liu X., Liu L., Jiangfang Y., Li Y., Liu Z., Fang C., Zhao L., Fernie A.R., Luo J.	Development of a widely targeted volatilomics method for profiling volatilomes in plants.	Mol Plant	15(1)	189-202	2022		
50624	34531388	Wang S., Li S., Wang J., Li Q., Xin X.F., Zhou S., Wang Y., Li D., Xu J., Luo Z.Q., He S.Y., Sun W.	A bacterial kinase phosphorylates OSK1 to suppress stomatal immunity in rice.	Nat Commun	12(1)	5479	2021		
50625	34564276	Shi L., Dong M., Lian L., Zhang J., Zhu Y., Kong W., Qiu L., Liu D., Xie Z., Zhan Z., Jiang Z.	Genome-Wide Association Study Reveals a New Quantitative Trait Locus in Rice Related to Resistance to Brown Planthopper <i>Nilaparvata lugens</i> (St?l).	Insects	12(9)		2021		
50626	34563538	Koga J., Yazawa M., Miyamoto K., Yumoto E., Kubota T., Sakazawa T., Hashimoto S., Sato M., Yamane H.	Sphingadienine-1-phosphate levels are regulated by a novel glycoside hydrolase family 1 glucocerebrosidase widely distributed in seed plants.	J. Biol. Chem.	297(5)	101236	2021		
50627	34515342	Zait Y., Ferrero-Serrano ?., Assmann S.M.	The alpha subunit of the heterotrimeric G protein regulates mesophyll CO2 conductance and drought tolerance in rice.	New Phytol.	232(6)	2324-2338	2021		
50628	34510489	Cartagena J.A., Yao Y., Mitsuya S., Tsuge T.	Comparative transcriptome analysis of root types in salt tolerant and sensitive rice varieties in response to salinity stress.	Physiol Plant	173(4)	1629-1642	2021		
50629	34685858	Biswas P.L., Nath U.K., Ghosal S., Goswami G., Uddin M.S., Ali O.M., Latef AAHA., Laing A.M., Gao Y.M., Hossain A.	Introgression of Bacterial Blight Resistance Genes in the Rice Cultivar Ciherang: Response against <i>Xanthomonas oryzae</i> pv. <i>oryzae</i> in the F6 Generation.	Plants (Basel)	10(10)		2021		
50630	34583646	Min X., Xu H., Huang F., Wei Y., Lin W., Zhang Z.	GC-MS-based metabolite profiling of key differential metabolites between superior and inferior spikelets of rice during the grain filling stage.	BMC Plant Biol.	21(1)	439	2021		
50631	34579459	Takahashi R., Ito M., Kawamoto T.	The Road to Practical Application of Cadmium Phytoremediation Using Rice.	Plants (Basel)	10(9)		2021		
50632	34544147	Lin D., Zhou W., Wang Y., Sun J., Pan X., Dong Y.	Rice tsv2 encoding threonyl-tRNA synthetase is needed for early chloroplast development and seedling growth under cold stress.	G3 (Bethesda)	11(9)		2021		
50633	34528806	Bao G., Ashraf U., Wan X., Zhou Q., Li S., Wang C., He L., Tang X.	Transcriptomic Analysis Provides Insights into Foliar Zinc Application Induced Upregulation in 2-Acetyl-1-pyrroline and Related Transcriptional Regulatory Mechanism in Fragrant Rice.	J. Agric. Food Chem.	69(38)	11350-11360	2021		
50634	34685848	Xie X., Zheng Y., Lu L., Yuan J., Hu J., Bu S., Lin Y., Liu Y., Guan H., Wu W.	Genome-Wide Association Study of QTLs Conferring Resistance to Bacterial Leaf Streak in Rice.	Plants (Basel)	10(10)		2021		
50635	34579461	Hafez E.M., Gowayed S.M., Nehela Y., Sakran R.M., Rady A.M.S., Awadalla A., Omara A.E., Alowaiesh B.F.	Incorporated Biochar-Based Soil Amendment and Exogenous Glycine Betaine Foliar Application Ameliorate Rice (<i>Oryza sativa</i> L.) Tolerance and Resilience to Osmotic Stress.	Plants (Basel)	10(9)		2021		
50636	34041586	Tahir M.S., Tian L.	HD2-type histone deacetylases: unique regulators of plant development and stress responses.	Plant Cell Rep.	40(9)	1603-1615	2021		
50637	34630473	Chen Y., Huang W., Zhang F., Luo X., Hu B., Xie J.	Metabolomic Profiling of Dongxiang Wild Rice Under Salinity Demonstrates the Significant Role of Amino Acids in Rice Salt Stress.	Front Plant Sci	12	729004	2021		
50638	34302720	Zhou C., Zhang Q., Chen Y., Huang J., Guo Q., Li Y., Wang W., Qiu Y., Guan W., Zhang J., Guo J., Shi S., Wu D., Zheng X., Nie L., Tan J., Huang C., Ma Y., Yang F., Fu X., Du B., Zhu L., Chen R., Li Z., Yuan L., He G.	Balancing selection and wild gene pool contribute to resistance in global rice germplasm against planthopper.	J Integr Plant Biol	63(10)	1695-1711	2021		
50639	34550280	Younas A., Xiukang W., Yousaf Z., Fiaz S., Riaz A., Hussain S., Huang S.	Physiological and biochemical changes induced by Qiangdi nano-863 biological assistant growth apparatus during rice seed priming under temperature stress.	Braz J Biol	83	e245206	2021		
50640	34515502	Hu X., Wang J., Li R., Wu X., Gao X., Li M.	Establishment of an Artificial Inoculation Method of <i>Ustilaginoidea virens</i> Without Damaging the Rice Panicle Sheaths.	Plant Dis.		PDIS12202746RE	2022		
50641	34534586	Satturu V., Kudapa H.B., Muthuramalingam P., Nadimpalli R.G.V., Vattikuti J.L., Anjali C., Satish L., Ramesh M., Mulinti S.	RNA-Seq based global transcriptome analysis of rice unravels the key players associated with brown planthopper resistance.	Int. J. Biol. Macromol.	191	118-128	2021		
50642	34535887	Neelam K., Kumar K., Kaur A., Kishore A., Kaur P., Babbar A., Kaur G., Kamboj I., Lore J.S., Vikal Y., Mangat G.S., Kaur R., Khanna R., Singh K.	High-resolution mapping of the quantitative trait locus (QTLs) conferring resistance to false smut disease in rice.	J. Appl. Genet.	63(1)	35-45	2022		
50643	34638789	Shoaib N., Liu L., Ali A., Mughal N., Yu G., Huang Y.	Molecular Functions and Pathways of Plastidial starch phosphorylase (PHO1) in Starch Metabolism: Current and Future Perspectives.	Int J Mol Sci	22(19)		2021		
50644	34476895	Luo Q., Chen S., Zhu J., Ye L., Hall N.D., Basak S., McElroy J.S., Chen Y.	Overexpression of EiKCS confers paraquat-resistance in rice (Oryza sativa L.) by promoting the polyamine pathway.	Pest Manag. Sci.	78(1)	246-262	2022		
50645	34912174	Matsumoto K., Ota Y., Yamakawa T., Ohno T., Seta S., Honda Y., Mizobuchi R., Sato H.	Breeding and characterization of the world's first practical rice variety with resistance to brown spot (<i>Bipolaris oryzae</i>) bred using marker-assisted selection.	Breed. Sci.	71(4)	474-483	2021		
50646	34547513	Jia K.P., Mi J., Ali S., Ohyanagi H., Moreno J.C., Ablazov A., Balakrishna A., Berqdar L., Fiore A., Diretto G., Mart?nez C., de Lera AR., Gojobori T., Al-Babili S.	An alternative, zeaxanthin epoxidase-independent abscisic acid biosynthetic pathway in plants.	Mol Plant	15(1)	151-166	2022		
50647	34630495	Pal G., Mehta D., Singh S., Magal K., Gupta S., Jha G., Bajaj A., Ramu V.S.	Foliar Application or Seed Priming of Cholic Acid-Glycine Conjugates can Mitigate/Prevent the Rice Bacterial Leaf Blight Disease <i>via</i> Activating Plant Defense Genes.	Front Plant Sci	12	746912	2021		
50648	34763852	Huybrechts M., Hendrix S., Kyndt T., Demeestere K., Vandamme D., Cuypers A.	Short-term effects of cadmium on leaf growth and nutrient transport in rice plants.	Plant Sci.	313	111054	2021		
50649	34502554	Cheng M., Yuan H., Wang R., Zou J., Liang T., Yang F., Li S.	Genome-Wide Identification and Analysis of the Metallothionein Genes in <i>Oryza</i> Genus.	Int J Mol Sci	22(17)		2021		
50650	34504130	Chen P., De Schutter K., Serna S., Chen S., Yang Q., Reichardt N.C., Van Damme EJM., Smagghe G.	Glycosylation reduces the glycan-independent immunomodulatory effect of recombinant Orysata lectin in Drosophila S2 cells.	Sci Rep	11(1)	17958	2021		
50651	34619558	Wakabayashi Y., Morita R., Aoki N.	Metabolic factors restricting sink strength in superior and inferior spikelets in high-yielding rice cultivars.	J. Plant Physiol.	266	153536	2021		
50652	34465003	Hui S., Li H., Mawia A.M., Zhou L., Cai J., Ahmad S., Lai C., Wang J., Jiao G., Xie L., Shao G., Sheng Z., Tang S., Wang J., Wei X., Hu S., Hu P.	Production of aromatic three-line hybrid rice using novel alleles of BADH2.	Plant Biotechnol. J.	20(1)	59-74	2022		
50653	34537586	Huang Y.Y., Fei G., Yu S.L., Liu Y.F., Fu H.L., Liao Q., Huang B.F., Liu X.Y., Xin J.L., Shen C.	Molecular and biochemical mechanisms underlying boron-induced alleviation of cadmium toxicity in rice seedlings.	Ecotoxicol. Environ. Saf.	225	112776	2021		
50654	34576121	Zhang J., Xu C., Liu K., Li Y., Wang M., Tao L., Yu H., Zhang C.	Deep Sequencing Discovery and Profiling of Known and Novel miRNAs Produced in Response to DNA Damage in Rice.	Int J Mol Sci	22(18)		2021		
50655	34895534	Wang X., Liu X., Hu Z., Bao S., Xia H., Feng B., Ma L., Zhao G., Zhang D., Hu Y.	Essentiality for rice fertility and alternative splicing of OsSUT1.	Plant Sci.	314	111065	2022		
50656	34495147	Warsi M.K., Howladar S.M., Alsharif M.A.	Regulon: An overview of plant abiotic stress transcriptional regulatory system and role in transgenic plants.	Braz J Biol	83	e245379	2021		
50657	34529158	Prahalada G.D., Marathi B., Vinarao R., Kim S.R., Diocton R., Ramos J., Jena K.K.	QTL Mapping of a Novel Genomic Region Associated with High Out-Crossing Rate Derived from Oryza longistaminata and Development of New CMS Lines in Rice, O. sativa L.	Rice (N Y)	14(1)	80	2021		
50658	34638174	Larmande P., Liu Y., Yao X., Xia J.	OryzaGP 2021 update: a rice gene and protein dataset for named-entity recognition.	Genomics Inform	19(3)	e27	2021		
50659	34782826	Maruyama R., Mayuzumi Y., Morisawa J., Kawai S.	Transgenic rice plants expressing the alpha-L-arabinofuranosidase of <i>Coprinopsis cinerea</i> exhibit strong dwarfism and markedly enhanced tillering.	Plant Biotechnol (Tokyo)	38(3)	379-386	2021		
50660	34382706	Gottin C., Dievart A., Summo M., Droc G., P?rin C., Ranwez V., Chantret N.	A new comprehensive annotation of leucine-rich repeat-containing receptors in rice.	Plant J.	108(2)	492-508	2021		
50661	34567086	Mahtha S.K., Purama R.K., Yadav G.	StAR-Related Lipid Transfer (START) Domains Across the Rice Pangenome Reveal How Ontogeny Recapitulated Selection Pressures During Rice Domestication.	Front Genet	12	737194	2021		
50662	34638787	Schaarschmidt S., Glaubitz U., Erban A., Kopka J., Zuther E.	Differentiation of the High Night Temperature Response in Leaf Segments of Rice Cultivars with Contrasting Tolerance.	Int J Mol Sci	22(19)		2021		
50663	34568568	Dong C., Hu Y., Ye C., Fan L., Guo L.	The complete chloroplast genome of weedy rice <i>Oryza sativa</i> f. <i>spontanea</i>.	Mitochondrial DNA B Resour	6(10)	3016-3017	2021		
50664	34685817	Lacombe S., Bangratz M., Ta H.A., Nguyen T.D., Gantet P., Brugidou C.	Optimized RNA-Silencing Strategies for <i>Rice Ragged Stunt Virus</i> Resistance in Rice.	Plants (Basel)	10(10)		2021		
50665	34620446	Matsusaka H., Fukuda M., Elakhdar A., Kumamaru T.	Serine hydroxymethyltransferase participates in the synthesis of cysteine-rich storage proteins in rice seed.	Plant Sci.	312	111049	2021		
50666	34685826	Rahaman F., Juraimi A.S., Rafii M.Y., Uddin M.K., Hassan L., Chowdhury A.K., Bashar H.M.K.	Allelopathic Effect of Selected Rice (<i>Oryza sativa</i>) Varieties against Barnyard Grass (<i>Echinochloa cruss-gulli</i>).	Plants (Basel)	10(10)		2021		
50667	34573373	Zhang J., Peng Z., Liu Q., Yang G., Zhou L., Li W., Wang H., Chen Z., Guo T.	Time Course Analysis of Genome-Wide Identification of Mutations Induced by and Genes Expressed in Response to Carbon Ion Beam Irradiation in Rice (<i>Oryza sativa</i> L.).	Genes (Basel)	12(9)		2021		
50668	34563791	Gong W., Zhou Y., Wang R., Wei X., Zhang L., Dai Y., Zhu Z.	Analysis of T-DNA integration events in transgenic rice.	J. Plant Physiol.	266	153527	2021		
50669	34431099	Chakraborty K., Ray S., Vijayan J., Molla K.A., Nagar R., Jena P., Mondal S., Panda B.B., Shaw B.P., Swain P., Chattopadhyay K., Sarkar R.K.	Preformed aerenchyma determines the differential tolerance response under partial submergence imposed by fresh and saline water flooding in rice.	Physiol Plant	173(4)	1597-1615	2021		
50670	34533642	Xiong E., Zhang C., Ye C., Jiang Y., Zhang Y., Chen F., Dong G., Zeng D., Yu Y., Wu L.	iTRAQ-based proteomic analysis provides insights into the molecular mechanisms of rice formyl tetrahydrofolate deformylase in salt response.	Planta	254(4)	76	2021		
50671	34592527	Yu H., Yang A., Wang K., Li Q., Ye D., Huang H., Zhang X., Wang Y., Zheng Z., Li T.	The role of polysaccharides functional groups in cadmium binding in root cell wall of a cadmium-safe rice line.	Ecotoxicol. Environ. Saf.	226	112818	2021		
50672	34650575	Kumar A., Gupta C., Thomas J., Pereira A.	Genetic Dissection of grain yield Component Traits Under High Nighttime Temperature Stress in a Rice Diversity Panel.	Front Plant Sci	12	712167	2021		
50673	34579397	Wei X., Liu S., Sun C., Xie G., Wang L.	Convergence and Divergence: Signal Perception and Transduction Mechanisms of Cold Stress in <i>Arabidopsis</i> and Rice.	Plants (Basel)	10(9)		2021		
50674	34437761	Tang B., Liu C., Li Z., Zhang X., Zhou S., Wang G.L., Chen X.L., Liu W.	Multilayer regulatory landscape during pattern-triggered immunity in rice.	Plant Biotechnol. J.	19(12)	2629-2645	2021		
50675	34669391	Zhang S., Li C., Gilbert R.G., Malde A.K.	Understanding the Binding of Starch Fragments to Granule-Bound starch synthase.	Biomacromolecules	22(11)	4730-4737	2021		
50676	34700217	Ramakrishna B., Sarma PVSRN., Ankati S., Bhuvanachandra B., Podile A.R.	Elicitation of defense response by transglycosylated chitooligosaccharides in rice seedlings.	Carbohydr. Res.	510	108459	2021		
50677	34744375	Ghimire S., Tang X., Liu W., Fu X., Zhang H., Zhang N., Si H.	SUMO conjugating enzyme: a vital player of SUMO pathway in plants.	Physiol Mol Biol Plants	27(10)	2421-2431	2021		
50678	34685935	Bhavanam S., Stout M.J.	Assessment of Silicon- and Mycorrhizae- Mediated Constitutive and Induced Systemic Resistance in Rice, <i>Oryza sativa</i> L., against the Fall Armyworm, <i>Spodoptera frugiperda</i> Smith.	Plants (Basel)	10(10)		2021		
50679	34661333	Salman E.K., Ghoniem K.E., Badr E.S., Emeran A.A.	The potential of dimetindene maleate inducing resistance to blast fungus Magnaporthe oryzae through activating the salicylic acid signaling pathway in rice plants.	Pest Manag. Sci.	78(2)	633-642	2022		
50680	34712736	Yang G., Yang Y., Guan Y., Xu Z., Wang J., Yun Y., Yan X., Tang Q.	Genetic Diversity of Shanlan Upland Rice (<i>Oryza sativa</i> L.) and Association Analysis of SSR Markers Linked to Agronomic Traits.	Biomed Res Int	2021	7588652	2021		
50681	34716344	Saitoh Y., Mitani-Ueno N., Saito K., Matsuki K., Huang S., Yang L., Yamaji N., Ishikita H., Shen J.R., Ma J.F., Suga M.	Structural basis for high selectivity of a rice silicon channel Lsi1.	Nat Commun	12(1)	6236	2021		
50682	34680982	Thianthavon T., Aesomnuk W., Pitaloka M.K., Sattayachiti W., Sonsom Y., Nubankoh P., Malichan S., Riangwong K., Ruanjaichon V., Toojinda T., Wanchana S., Arikit S.	Identification and Validation of a QTL for Bacterial Leaf Streak Resistance in Rice (<i>Oryza sativa</i> L.) against Thai <i>Xoc</i> Strains.	Genes (Basel)	12(10)		2021		
50683	34639042	Kwon Y., Kabange N.R., Lee J.Y., Seo B.Y., Shin D., Lee S.M., Cha J.K., Cho J.H., Kang J.W., Park D.S., Ko J.M., Lee J.H.	RNA-Seq and Electrical Penetration Graph Revealed the Role of <i>Grh1</i>-Mediated Activation of Defense Mechanisms towards Green Rice Leafhopper (<i>Nephotettix cincticeps</i> Uhler) Resistance in Rice (<i>Oryza sativa</i> L.).	Int J Mol Sci	22(19)		2021		
50684	34721450	Ogawa D., Sakamoto T., Tsunematsu H., Kanno N., Nonoue Y., Yonemaru J.I.	Remote-Sensing-Combined Haplotype Analysis Using Multi-Parental Advanced Generation Inter-Cross Lines Reveals Phenology QTLs for Canopy Height in Rice.	Front Plant Sci	12	715184	2021		
50685	34620988	Zhang Y.M., Yu H.X., Ye W.W., Shan J.X., Dong N.Q., Guo T., Kan Y., Xiang Y.H., Zhang H., Yang Y.B., Li Y.C., Zhao H.Y., Lu Z.Q., Guo S.Q., Lei J.J., Liao B., Mu X.R., Cao Y.J., Yu J.J., Lin H.X.	A rice QTL GS3.1 regulates grain size through metabolic-flux distribution between flavonoid and lignin metabolons without affecting stress tolerance.	Commun Biol	4(1)	1171	2021		
50686	34515770	Feng L., Ma A., Song B., Yu S., Qi X.	Mapping causal genes and genetic interactions for agronomic traits using a large F2 population in rice.	G3 (Bethesda)	11(11)		2021		
50687	34628690	Mondal R., Kumar A., Chattopadhyay S.K.	Structural property, molecular regulation, and functional diversity of glutamine synthetase in higher plants: a data-mining bioinformatics approach.	Plant J.	108(6)	1565-1584	2021		
50688	34714403	Tisarum R., Pongprayoon W., Sithtisarn S., Sampumphuang T., Sotesaritkul T., Datta A., Singh H.P., Cha-Um S.	Expression levels of genes involved in metal homeostasis, physiological adaptation, and growth characteristics of rice (Oryza sativa L.) genotypes under Fe and/or Al toxicity.	Protoplasma			2021		
50689	34608951	Dan Z., Chen Y., Li H., Zeng Y., Xu W., Zhao W., He R., Huang W.	The metabolomic landscape of rice heterosis highlights pathway biomarkers for predicting complex phenotypes.	Plant Physiol.	187(2)	1011-1025	2021		
50690	34777415	Xu C., Yang F., Tang X., Lu B., Li Z., Liu Z., Ding Y., Ding C., Li G.	Super Rice With High Sink Activities Has Superior Adaptability to Low Filling Stage Temperature.	Front Plant Sci	12	729021	2021		
50691	34623472	Daryani P., Darzi Ramandi H., Dezhsetan S., Mirdar Mansuri R., Hosseini Salekdeh G., Shobbar Z.S.	Pinpointing genomic regions associated with root system architecture in rice through an integrative meta-analysis approach.	Theor. Appl. Genet.	135(1)	81-106	2022		
50692	34671919	Crofts N., Domon A., Miura S., Hosaka Y., Oitome N.F., Itoh A., Noge K., Fujita N.	Starch synthases SSIIa and GBSSI control starch structure but do not determine starch granule morphology in the absence of SSIIIa and SSIVb.	Plant Mol. Biol.			2021		
50693	34769104	Fan X., Jiang H., Meng L., Chen J.	Gene Mapping, Cloning and Association Analysis for salt tolerance in Rice.	Int J Mol Sci	22(21)		2021		
50694	34709485	Zhuang Y., Wang X., Llorca L.C., Lu J., Lou Y., Li R.	Role of jasmonate signaling in rice resistance to the leaf folder Cnaphalocrocis medinalis.	Plant Mol. Biol.			2021		
50695	34312926	Xu P., Ma W., Liu J., Hu J., Cai W.	Overexpression of a small GTP-binding protein Ran1 in Arabidopsis leads to promoted elongation growth and enhanced disease resistance against P. syringae DC3000.	Plant J.	108(4)	977-991	2021		
50696	34777413	Kong W., Sun T., Zhang C., Deng X., Li Y.	Comparative Transcriptome Analysis Reveals the Mechanisms Underlying Differences in salt tolerance Between <i>indica</i> and <i>japonica</i> Rice at Seedling Stage.	Front Plant Sci	12	725436	2021		
50697	34549440	He H., Wang Q., Wang L., Yang K., Yang R., You C., Ke J., Wu L.	Photosynthetic physiological response of water-saving and drought-resistant rice to severe drought under wetting-drying alternation irrigation.	Physiol Plant	173(4)	2191-2206	2021		
50698	34328188	Zhuang M., Li C., Wang J., Mao X., Li L., Yin J., Du Y., Wang X., Jing R.	The wheat SHORT root length 1 gene TaSRL1 controls root length in an auxin-dependent pathway.	J. Exp. Bot.	72(20)	6977-6989	2021		
50699	34828295	Dwiningsih Y., Kumar A., Thomas J., Ruiz C., Alkahtani J., Al-Hashimi A., Pereira A.	Identification of Genomic Regions Controlling Chalkiness and Grain Characteristics in a Recombinant Inbred Line Rice Population Based on High-Throughput SNP Markers.	Genes (Basel)	12(11)		2021		
50700	34610140	Xia S., Liu H., Cui Y., Yu H., Rao Y., Yan Y., Zeng D., Hu J., Zhang G., Gao Z., Zhu L., Shen L., Zhang Q., Li Q., Dong G., Guo L., Qian Q., Ren D.	UDP-N-acetylglucosamine pyrophosphorylase enhances rice survival at high temperature.	New Phytol.	233(1)	344-359	2022		
50701	34718775	Lim C., Kang K., Shim Y., Yoo S.C., Paek N.C.	Inactivating transcription factor OsWRKY5 enhances drought tolerance through abscisic acid signaling pathways.	Plant Physiol.			2021		
50702	34828305	Phan H., Schl?ppi M.	Low Temperature Antioxidant Activity QTL Associate with Genomic Regions Involved in Physiological Cold Stress Tolerance Responses in Rice (<i>Oryza sativa</i> L.).	Genes (Basel)	12(11)		2021		
50703	34745178	Liu W., Yin T., Zhao Y., Wang X., Wang K., Shen Y., Ding Y., Tang S.	Effects of High Temperature on Rice Grain Development and Quality Formation Based on Proteomics Comparative Analysis Under Field Warming.	Front Plant Sci	12	746180	2021		
50704	34894501	Wu M., Zhang K., Xu Y., Wang L., Liu H., Qin Z., Xiang Y.	The moso bamboo WRKY transcription factor, PheWRKY86, regulates drought tolerance in transgenic plants.	Plant Physiol. Biochem.	170	180-191	2022		
50705	34643821	Li B., Du X., Fei Y., Wang F., Xu Y., Li X., Li W., Chen Z., Fan F., Wang J., Tao Y., Jiang Y., Zhu Q.H., Yang J.	Efficient Breeding of Early-Maturing Rice Cultivar by Editing PHYC via CRISPR/Cas9.	Rice (N Y)	14(1)	86	2021		
50706	34834617	Faizan M., Sehar S., Rajput V.D., Faraz A., Afzal S., Minkina T., Sushkova S., Adil M.F., Yu F., Alatar A.A., Akhter F., Faisal M.	Modulation of Cellular Redox Status and Antioxidant Defense System after Synergistic Application of Zinc Oxide Nanoparticles and Salicylic Acid in Rice (<i>Oryza sativa</i>) Plant under Arsenic Stress.	Plants (Basel)	10(11)		2021		
50707	34621017	Xu F., Liao H., Zhang Y., Yao M., Liu J., Sun L., Zhang X., Yang J., Wang K., Wang X., Ding Y., Liu C., Rensing C., Zhang J., Yeh K., Xu W.	Coordination of root auxin with the fungus Piriformospora indica and bacterium Bacillus cereus enhances rice rhizosheath formation under soil drying.	ISME J			2021		
50708	34680963	Si W., Liang Q., Chen L., Song F., Chen Y., Jiang H.	Ectopic Overexpression of Maize Heat Stress Transcription Factor <i>ZmHsf05</i> Confers drought tolerance in Transgenic Rice.	Genes (Basel)	12(10)		2021		
50709	34625965	Choi J., Roy Choudhury A., Walitang D.I., Lee Y., Sa T.	ACC deaminase-producing Brevibacterium linens RS16 enhances heat-stress tolerance of rice (Oryza sativa L.).	Physiol Plant			2021		
50710	34680677	Horgan F.G., Pe?alver Cruz A., Arida A., Ferrater J.B., Bernal C.C.	Adaptation by the Brown Planthopper to Resistant Rice: A Test of Female-Derived Virulence and the Role of Yeast-like Symbionts.	Insects	12(10)		2021		
50711	34283216	Lin Y., Zhu Y., Cui Y., Chen R., Chen Z., Li G., Fan M., Chen J., Li Y., Guo X., Zheng X., Chen L., Wang F.	Derepression of specific miRNA-target genes in rice using CRISPR/Cas9.	J. Exp. Bot.	72(20)	7067-7077	2021		
50712	34777432	Murugaiyan V., Ali J., Frei M., Zeibig F., Pandey A., Wairich A., Wu L.B., Murugaiyan J., Li Z.	Identification of Promising Genotypes Through Systematic Evaluation for Arsenic Tolerance and Exclusion in Rice (<i>Oryza sativa</i> L.).	Front Plant Sci	12	753063	2021		
50713	34283218	Zhou X., Nong C., Wu B., Zhou T., Zhang B., Liu X., Gao G., Mi J., Zhang Q., Liu H., Liu S., Li Z., He Y., Mou T., Guo S., Li S., Yang Y., Zhang Q., Xing Y.	Combinations of Ghd7, Ghd8, and Hd1 determine strong heterosis of commercial rice hybrids in diverse ecological regions.	J. Exp. Bot.	72(20)	6963-6976	2021		
50714	34834694	Cheng P., Wang J., Zhao Z., Kong L., Lou W., Zhang T., Jing D., Yu J., Shu Z., Huang L., Zhu W., Yang Q., Shen W.	Molecular Hydrogen Increases Quantitative and Qualitative Traits of Rice Grain in Field Trials.	Plants (Basel)	10(11)		2021		
50715	34675957	Liu C., Cao Y., Hua Y., Du G., Liu Q., Wei X., Sun T., Lin J., Wu M., Cheng Z., Wang K.	Concurrent Disruption of Genetic Interference and Increase of Genetic Recombination Frequency in Hybrid Rice Using CRISPR/Cas9.	Front Plant Sci	12	757152	2021		
50716	34828879	Sangwongchai W., Tananuwong K., Krusong K., Thitisaksakul M.	Yield, Grain Quality, and Starch Physicochemical Properties of 2 Elite Thai Rice Cultivars Grown under Varying Production Systems and Soil Characteristics.	Foods	10(11)		2021		
50717	34828843	Li Z., Guo D., Li X., Tang Z., Ling X., Zhou T., Zhang B.	Heat-Moisture Treatment Further Reduces In Vitro Digestibility and Enhances Resistant Starch Content of a High-Resistant Starch and Low-Glutelin Rice.	Foods	10(11)		2021		
50718	34685978	Zhou H., Li J., Liu X., Wei X., He Z., Hu L., Wang J., Duan M., Xie G., Wang J., Wang L.	The Divergent Roles of the Rice bcl-2 Associated Athanogene (BAG) Genes in Plant Development and Environmental Responses.	Plants (Basel)	10(10)		2021		
50719	34642568	Mao T., Zhu M., Ahmad S., Ye G., Sheng Z., Hu S., Jiao G., Xie L., Tang S., Wei X., Hu P., Shao G.	Superior <i>japonica</i> rice variety YJ144 with improved rice blast resistance, yield, and quality achieved using molecular design and multiple breeding strategies.	Mol. Breed.	41(10)	65	2021		
50720	34677716	Wang J., Wang T., Wang Q., Tang X., Ren Y., Zheng H., Liu K., Yang L., Jiang H., Li Y., Liu Q., Zou D., Zheng H.	QTL mapping and candidate gene mining of flag leaf size traits in Japonica rice based on linkage mapping and genome-wide association study.	Mol. Biol. Rep.	49(1)	63-71	2022		
50721	34609525	Zhou X., Liu X., Zhao J., Guan F., Yao D., Wu N., Tian J.	The endophytic bacterium Bacillus koreensis 181-22 promotes rice growth and alleviates cadmium stress under cadmium exposure.	Appl. Microbiol. Biotechnol.	105(21-22)	8517-8529	2021		
50722	34622380	Duan G., Ma X., Shi Z., Yang Y., Chen H., Huang Q., Yang J.	MoSDT1 triggers defense response through modulating phosphorylated proteins in rice.	Plant Mol. Biol.	108(1-2)	15-30	2022		
50723	34633089	Kumari A., Singh P., Kaladhar V.C., Manbir, Paul D., Pathak P.K., Gupta K.J.	Phytoglobin-NO cycle and AOX pathway play a role in anaerobic germination and growth of deepwater rice.	Plant Cell Environ.	45(1)	178-190	2022		
50724	34240169	Alam O., Gutaker R.M., Wu C.C., Hicks K.A., Bocinsky K., Castillo C.C., Acabado S., Fuller D., d'Alpoim Guedes JA., Hsing Y.I., Purugganan M.D.	Genome Analysis Traces Regional Dispersal of Rice in Taiwan and Southeast Asia.	Mol. Biol. Evol.	38(11)	4832-4846	2021		
50725	34681468	Zhai Y., Xing J., Luo X., Zhang H., Yang K., Shao X., Chen K., Li Y.	Effects of Pectin on the Physicochemical Properties and Freeze-Thaw Stability of Waxy Rice Starch.	Foods	10(10)		2021		
50726	34650105	Stanley-Raja V., Senthil-Nathan S., Chanthini K.M., Sivanesh H., Ramasubramanian R., Karthi S., Shyam-Sundar N., Vasantha-Srinivasan P., Kalaivani K.	Biological activity of chitosan inducing resistance efficiency of rice (Oryza sativa L.) after treatment with fungal based chitosan.	Sci Rep	11(1)	20488	2021		
50727	34610789	Zhang G., Wang R., Ma J., Gao H., Deng L., Wang N., Wang Y., Zhang J., Li K., Zhang W., Mu F., Liu H., Wang Y.	Genome-wide association studies of yield-related traits in high-latitude japonica rice.	BMC Genom Data	22(1)	39	2021		
50728	34716593	Patil S.B., Barbier F.F., Zhao J., Zafar S.A., Uzair M., Sun Y., Fang J., Perez-Garcia MD., Bertheloot J., Sakr S., Fichtner F., Chabikwa T.G., Yuan S., Beveridge C.A., Li X.	Sucrose promotes D53 accumulation and tillering in rice.	New Phytol.			2021		
50729	34609529	Siddikee M.A., Zereen M.I., Wu M., Zhang W., Dai C.C.	Phomopsis liquidambaris reduces ethylene biosynthesis in rice under salt stress via inhibiting the activity of 1-aminocyclopropane-1-carboxylate deaminase.	Arch. Microbiol.	203(10)	6215-6229	2021		
50730	34686028	Abdelrahman M., Selim M.E., ElSayed M.A., Ammar M.H., Hussein F.A., ElKholy N.K., ElShamey E.A., Khan N., Attia K.A.	Developing Novel Rice Genotypes Harboring Specific QTL Alleles Associated with High grain yield under Water Shortage Stress.	Plants (Basel)	10(10)		2021		
50731	34606587	Rajakani R., Sellamuthu G., Ishikawa T., Ahmed H.A.I., Bharathan S., Kumari K., Shabala L., Zhou M., Chen Z.H., Shabala S., Venkataraman G.	Reduced apoplastic barriers in tissues of shoot-proximal rhizomes of Oryza coarctata are associated with Na + sequestration.	J. Exp. Bot.			2021		
50732	34676451	Terensan S., Fernando H.N.S., Silva J.N., Perera SACN., Kottearachchi N.S., Weerasena OVDSJ.	In silico molecular and morphological analysis of rice blast resistant gene Pi-ta in Sri Lankan rice germplasm.	J Genet Eng Biotechnol	19(1)	163	2021		
50733	34628172	Verma L., Kohli P.S., Maurya K., K B A., Thakur J.K., Giri J.	Specific galactolipids species correlate with rice genotypic variability for phosphate utilization efficiency.	Plant Physiol. Biochem.	168	105-115	2021		
50734	34665398	Yang G., Nabi F., Sajid S., Kaleri A.R., Jakhar A.M., Cheng L., Raspor M., Muhammad N., Ma J., Hu Y.	Response of root development and nutrient uptake of two chinese cultivars of hybrid rice to nitrogen and phosphorus fertilization in Sichuan Province, China.	Mol. Biol. Rep.	48(12)	8009-8021	2021		
50735	34582078	Ding C., Lin X., Zuo Y., Yu Z., Baerson S.R., Pan Z., Zeng R., Song Y.	Transcription factor OsbZIP49 controls tiller angle and plant architecture through the induction of indole-3-acetic acid-amido synthetases in rice.	Plant J.	108(5)	1346-1364	2021		
50736	34661303	Fu W., Jin G., Jim?nez-Alem?n GH., Wang X., Song J., Li S., Lou Y., Li R.	The jasmonic acid-amino acid conjugates JA-Val and JA-Leu are involved in rice resistance to herbivores.	Plant Cell Environ.	45(1)	262-272	2022		
50737	34657161	Dang X., Zhang Y., Li Y., Chen S., Liu E., Fang B., Liu Q., She D., Dong Z., Fan Z., Li D., Wang H., Zhu S., Hu X., Li Y., Jiang J., Hong D.	SYL3-k increases style length and yield of F1 seeds via enhancement of endogenous GA4 content in Oryza sativa L. pistils.	Theor. Appl. Genet.	135(1)	321-336	2022		
50738	34686134	Beena R., Kirubakaran S., Nithya N., Manickavelu A., Sah R.P., Abida P.S., Sreekumar J., Jaslam P.M., Rejeth R., Jayalekshmy V.G., Roy S., Manju R.V., Viji M.M., Siddique K.H.M.	Association mapping of drought tolerance and agronomic traits in rice (Oryza sativa L.) landraces.	BMC Plant Biol.	21(1)	484	2021		
50739	34777434	Ouyang C., Liu W., Chen S., Zhao H., Chen X., Jin X., Li X., Wu Y., Zeng X., Huang P., He X., An B.	The Naturally Evolved <i>EPSPS</i> From Goosegrass Confers High Glyphosate Resistance to Rice.	Front Plant Sci	12	756116	2021		
50740	34297101	Lin F., Letuma P., Li Z., Lin S., Rensing C., Lin W.	Rhizospheric pathogen proliferation and ROS production are associated with premature senescence of the osvha-a1 rice mutant.	J. Exp. Bot.	72(20)	7247-7263	2021		
50741	34681408	Maung T.Z., Chu S.H., Park Y.J.	Functional Haplotypes and Evolutionary Insight into the Granule-Bound Starch Synthase II (<i>GBSSII</i>) Gene in Korean Rice Accessions (KRICE_CORE).	Foods	10(10)		2021		
50742	34829551	Jan R., Khan M.A., Asaf S., Lubna, Lee I.J., Kim K.M.	Over-Expression of Chorismate Mutase Enhances the Accumulation of Salicylic Acid, Lignin, and Antioxidants in Response to the White-Backed Planthopper in Rice Plants.	Antioxidants (Basel)	10(11)		2021		
50743	34628678	Hu H., Ren D., Hu J., Jiang H., Chen P., Zeng D., Qian Q., Guo L.	WHITE AND lesion-mimic LEAF1, encoding a lumazine synthase, affects reactive oxygen species balance and chloroplast development in rice.	Plant J.	108(6)	1690-1703	2021		
50744	34829600	Lee H.Y., Back K.	2-Hydroxymelatonin, Rather Than Melatonin, Is Responsible for RBOH-Dependent Reactive Oxygen Species Production Leading to Premature Senescence in Plants.	Antioxidants (Basel)	10(11)		2021		
50745	34721478	Li J., Zhang H., Yang R., Zeng Q., Han G., Du Y., Yang J., Yang G., Luo Q.	Identification of miRNAs Contributing to the Broad-Spectrum and Durable Blast Resistance in the Yunnan Local Rice Germplasm.	Front Plant Sci	12	749919	2021		
50746	34673121	Dash P.K., Rai R.	Green revolution to grain revolution: Florigen in the frontiers.	J. Biotechnol.	343	38-46	2022		
50747	34627147	Samalova M., Moore I.	The steroid-inducible pOp6/LhGR gene expression system is fast, sensitive and does not cause plant growth defects in rice (Oryza sativa).	BMC Plant Biol.	21(1)	461	2021		
50748	34619328	Chen K., Ke R., Du M., Yi Y., Chen Y., Wang X., Yao L., Liu H., Hou X., Xiong L., Yang Y., Xie K.	A FLASH pipeline for arrayed CRISPR library construction and the gene function discovery of rice receptor-like kinases.	Mol Plant			2021		
50749	34828355	Ji H., Shin Y., Lee C., Oh H., Yoon I.S., Baek J., Cha Y.S., Lee G.S., Kim S.L., Kim K.H.	Genomic Variation in Korean <i>japonica</i> Rice Varieties.	Genes (Basel)	12(11)		2021		
50750	34681858	Hu Z., Tang Z., Zhang Y., Niu L., Yang F., Zhang D., Hu Y.	Rice SUT and SWEET Transporters.	Int J Mol Sci	22(20)		2021		
50751	34770922	Garc?a YH., Zamora O.R., Troncoso-Rojas R., Tiznado-Hern?ndez ME., B?ez-Flores ME., Carvajal-Millan E., Rasc?n-Chu A.	Toward Understanding the Molecular Recognition of Fungal Chitin and Activation of the Plant Defense Mechanism in Horticultural Crops.	Molecules	26(21)		2021		
50752	34633536	Aini H., Sato Y., Uno K., Higashiyama T., Okamoto T.	Dynamics of mitochondrial distribution during development and asymmetric division of rice zygotes.	Plant Reproduction			2021		
50753	34665915	Peng L., Sun S., Yang B., Zhao J., Li W., Huang Z., Li Z., He Y., Wang Z.	Genome-wide association study reveals that the cupin domain protein OsCDP3.10 regulates seed vigour in rice.	Plant Biotechnol. J.			2021	GLP8-5,GER6,CDP3.1 ,GLP1-1,GER4,GLP1-3,GLP2-1,GLP2-3,GLP2-4,OXO1,OXO2,OXO4,GLP4-1,GLP5-2,GER3,GLP8-11,GLP8-13,GLP9-2,GLP11-1,GLP12-3,CDP1.5,CDP9.2,CDP9.1,CDP9.3,GER2,GLP8-8,GLP3-8,CDP5.1,GER1,GLP1-5,GLP12-1,CDP3.2,GLP3-2,GLP9-3,GLP3-1,GLP8-6,FLOC1,OXO3,GER7,GLP9-1,GLP8-1,GER5,GLP8-10,GLP8-12,GLP3-9,GLP8-9,CDP3.2,GLP12-2,GLP12-4	OsGLP8-5, OsCDP8.5, CDP8.5,OsGLP8-7, GLP8-7, OsGER6, OsRGLP2, RGLP2, OsCDP8.7, CDP8.7,OsEnS-57, EnS-57, OsCDP3.1, OsCDP3.10, CDP3.10,OsGLP1-1, OsCDP1.1, CDP1.1,OsGER4, OsGLP1-2, GLP1-2, OsGLP1-1, GLP1-1, OsCDP1.2, CDP1.2,OsGLP1-3, OsGLP1-2, GLP1-2, OsCDP1.3, CDP1.3,OsGLP2-1, OsCDP2.1, CDP2.1,OsGLP2-3, OsCDP2.2, CDP2.2,OsGLP2-4, OsGLP2-1, GLP2-1, OsCDP2.3, CDP2.3,OsOxO1, OsGLP3-3, GLP3-3, OsCDP3.6, CDP3.6,Osoxo4, OsOxO2, OsGLP3-4, GLP3-4, OsCDP3.7, CDP3.7,OsOxO4, OsGLP3-6, GLP3-6, OsCDP3.9, CDP3.9,OsGLP4-1, OsCDP4.1, CDP4.1,OsGLP5-2, OsGLP5-1, GLP5-1, OsCDP5.2, CDP5.2,OsGLP8-2, GLP8-2, OsGER3, GLP16, OsEnS-117, OsCDP8.2, CDP8.2,OsGLP8-11, RGLP1, OsRGLP1, OsCDP8.11, CDP8.11,OsGLP8-13, OsCDP8.13, CDP8.13,OsGLP9-2, OsCDP9.5, CDP9.5,OsGLP11-1, OsCDP11.1, CDP11.1,OsGLP12-3, OsCDP12.3, CDP12.3,OsCDP1.5,OsCDP9.2,OsCDP9.1,OsCDP9.3,OsGLP8-3, GLP8-3, OsGER2, OsCDP8.3, CDP8.3,OsGLP8-8, OsCDP8.8, CDP8.8,OsGLP3-8, OsCDP3.13, CDP3.13,OsCDP5.1,OsGLP8-4, GLP8-4, OsGER1, OsGer1, OsCDP8.4, CDP8.4,OsGLP1-5, OsGLP1-4, GLP1-4, OsCDP1.4, CDP1.4,OsGLP12-1, OsCDP12.1, CDP12.1,OsCDP3.2, FLOC3, OsFLOC3, OsCDP3.3, CDP3.3,OsGLP3-2, OsCDP3.4, CDP3.4,OsGLP9-3, OsCDP9.6, CDP9.6,OsGLP3-1, OsCDP3.1, CDP3.1,OsGLP8-6, OsCDP8.6, CDP8.6,OsEnS-51, OsFLOC1, OsCDP3.5, CDP3.5,OsOxO3, OsGLP3-5, GLP3-5, OsCDP3.8, CDP3.8,OsGER7, OsGLP3-7, GLP3-7, OsCDP3.11, CDP3.11,OsGLP9-1, OsCDP9.4, CDP9.4,OsGLP8-1, OsCDP8.1, CDP8.1,OsGLP1, GLP1, GER1, GLP110, OsGER1, OsGER5, OsGLP8-14, GLP8-14, OsCDP8.14, CDP8.14,OsGLP8-10, OsRGLP2, RGLP2, OsCDP8.10, CDP8.10,OsGLP8-12, OsCDP8.12, CDP8.12,OsGLP3-9, OsCDP3.12, CDP3.12,OsGLP8-9, OsCDP8.9, CDP8.9,FLOC2, OsFLOC2, OsCDP3.2,OsGLP12-2, OsCDP12.2, CDP12.2,OsGLP12-4, OsCDP12.4, CDP12.4
50754	34761063	Wu L.B., Feng Y., Zeibig F., Alam M.S., Frei M.	High Throughput Analyses of Ascorbate-turnover Enzyme Activities in Rice (<i>Oryza sativa</i> L.) Seedlings.	Bio Protoc	11(20)	e4190	2021		
50755	34645826	Ni P., Huang N., Nie F., Zhang J., Zhang Z., Wu B., Bai L., Liu W., Xiao C.L., Luo F., Wang J.	Genome-wide detection of cytosine methylations in plant from Nanopore data using deep learning.	Nat Commun	12(1)	5976	2021		
50756	34676666	Qi H., Xia F.N., Xiao S., Li J.	TRAF proteins as key regulators of plant development and stress responses.	J Integr Plant Biol			2021		
50757	34615543	Xiao N., Pan C., Li Y., Wu Y., Cai Y., Lu Y., Wang R., Yu L., Shi W., Kang H., Zhu Z., Huang N., Zhang X., Chen Z., Liu J., Yang Z., Ning Y., Li A.	Genomic insight into balancing high yield, good quality, and blast resistance of japonica rice.	Genome Biol.	22(1)	283	2021		
50758	34585814	Yu L., Ma S., Zhang X., Tian D., Yang S., Jia X., Traw M.B.	Ancient rapid functional differentiation and fixation of the duplicated members in rice Dof genes after whole genome duplication.	Plant J.	108(5)	1365-1381	2021		
50759	34538012	Rattanawong K., Koiso N., Toda E., Kinoshita A., Tanaka M., Tsuji H., Okamoto T.	Regulatory functions of ROS dynamics via glutathione metabolism and glutathione peroxidase activity in developing rice zygote.	Plant J.	108(4)	1097-1115	2021		
50760	34681166	Chinachanta K., Shutsrirung A., Herrmann L., Lesueur D., Pathom-Aree W.	Enhancement of the Aroma Compound 2-Acetyl-1-pyrroline in Thai Jasmine Rice (<i>Oryza sativa</i>) by Rhizobacteria under Salt Stress.	Biology (Basel)	10(10)		2021		
50761	34688194	Raja K.V., Sekhar K.M., Reddy V.D., Reddy A.R., Rao K.V.	Activation of CDC48 and acetyltransferase encoding genes contributes to enhanced abiotic stress tolerance and improved productivity traits in rice.	Plant Physiol. Biochem.	168	329-339	2021		
50762	34697384	Wang J.Y., Alseekh S., Xiao T., Ablazov A., Perez de Souza L., Fiorilli V., Anggarani M., Lin P.Y., Votta C., Novero M., Jamil M., Lanfranco L., Hsing Y.C., Blilou I., Fernie A.R., Al-Babili S.	Multi-omics approaches explain the growth-promoting effect of the apocarotenoid growth regulator zaxinone in rice.	Commun Biol	4(1)	1222	2021		
50763	34669755	Potupureddi G., Balija V., Ballichatla S., C G G., Awalellu K., Lekkala S., Jallipalli K., M G G., Mohammad E., M M., Arutla S., Burka R., Gouri Shankar L., Ayyangari Phani P., Lella Venkata S., Raman Meenakshi S., B C V., Vemuri R.B., Brahma K., Madnala R., Patel H.K., Sonti R.V., Madhav M.S.	Mutation resource of Samba Mahsuri revealed the presence of high extent of variations among key traits for rice improvement.	PLoS ONE	16(10)	e0258816	2021		
50764	34077334	Tang H., Liu H.	Roles of single gene in plant hypoxia and pathogen responses.	Plant Signal Behav	16(10)	1934295	2021		
50765	34653438	Zhao X., Xu Z., Xu H., Lin N., Ma J.	Surface-charged starch nanocrystals from glutinous rice: Preparation, crystalline properties and cytotoxicity.	Int. J. Biol. Macromol.	192	557-563	2021		
50766	34685908	Vinarao R., Proud C., Snell P., Fukai S., Mitchell J.	QTL Validation and Development of SNP-Based High Throughput Molecular Markers Targeting a Genomic Region Conferring Narrow Root Cone Angle in Aerobic Rice Production Systems.	Plants (Basel)	10(10)		2021		
50767	34588885	Mohamed G.M., Amer A.M., Osman N.H., Sedikc M.Z., Hussein M.H.	Effects of different gelling agents on the different stages of rice regeneration in two rice cultivars.	Saudi J Biol Sci	28(10)	5738-5744	2021		
50768	34601659	Yang W., Xiong L., Liang J., Hao Q., Luan X., Tan Q., Lin S., Zhu H., Liu G., Liu Z., Bu S., Wang S., Zhang G.	Substitution Mapping of Two Closely Linked QTLs on Chromosome 8 Controlling Grain Chalkiness in Rice.	Rice (N Y)	14(1)	85	2021		
50769	34681568	Molina-Risco M., Ibarra O., Faion-Molina M., Kim B., Septiningsih E.M., Thomson M.J.	Optimizing <i>Agrobacterium</i>-Mediated Transformation and CRISPR-Cas9 Gene Editing in the <i>tropical japonica</i> Rice Variety Presidio.	Int J Mol Sci	22(20)		2021		
50770	28981779	Zhang C., Li C., Liu J., Lv Y., Yu C., Li H., Zhao T., Liu B.	The OsABF1 transcription factor improves drought tolerance by activating the transcription of COR413-TM1 in rice.	J. Exp. Bot.	68(16)	4695-4707	2017	BZIP72,BZIP23,PP2C30,PP2C1,BZIP12,COR413-TM1	OsbZIP72, OsAREB2, OsABF4, ABF4, Osbzip72, OsABI5, ABI5,OsbZIP23, OsAREB1, OsABF2, Osbzip23, OsAREB2, OsZIP23, ZIP23,OsPP2C30, OsPP48, PP48,OsPP2C1, OsSIPP2C1, SIPP2C1, OsPP2C68, PP2C68, OsPP108,OsbZIP12, OsABF1, ABF1, OsOSE2, OSE2, OsbZIP12/OsABF1,OsCOR413-TM1, Oscor413-tm1
50771	0	Chen Y., Liu L., Shen Y., Liu S., Huang J., Long Q., Wu W., Yang C., Chen H., Guo X., Cheng Z., Jiang L., Wan J.	Loss of Function of the Cytochrome P450 Gene CYP78B5 Causes Giant Embryos in Rice	Plant Molecular Biology Reporter	33	69-83	2015	GE1	ge1, ge, CYP78A13, OsCYP78A13, GE, BG2, GES, OsGE/CYP78B5, CYP78B5, OsCYP78B5
50772	29393510	Yang J., Luo D., Yang B., Frommer W.B., Eom J.S.	SWEET11 and 15 as key players in seed filling in rice.	New Phytol.	218(2)	604-615	2018	SWEET15,SWEET4,XA13,SWEET13	OsSWEET15,OsSWEET4,xa13, Xa13, Os8N3, Os-8N3, 8N3, OsSWEET11, SWEET11, OsSWEET11/Xa13, Xa13/Os8N3/SWEET11, Os8N3/Xa13, OsSWEET11/Os8N3, OsSWEET11a, SWEET11a,OsSWEET13, Xa25(t), Xa25, OsMtN3, Xa25/SWEET13, OsSWEET13/XA25
50773	9553059	C A Lu, E K Lim, S M Yu	Sugar response sequence in the promoter of a rice alpha-amylase gene serves as a transcriptional enhancer.	J. Biol. Chem.	273(17)	10120-31	1998	AMY3D	Amy3D/E*(RAmy3D/E), alpha Amy3, AmyII-4, AMY1.3, Amy3D, Amy3D/E*, RAmy3D/E, Amy3D_E, Amy8, aAmy3, RAmy3D, OsAmy3D, alphaAmy3, OsRamy3D
50774	0	Yokotani N., Shikata M., Ichikawa H., Mitsuda N., Masaru Ohme-Takagi, Minami E., Nishizawa Y.	OsWRKY24, a blast-disease responsive transcription factor, positively regulates rice disease resistance	J Gen Plant Pathol	84	85-91	2018	WRKY24	OsWRKY24
50775	34726825	Sun C., Li D., Gao Z., Gao L., Shang L., Wang M., Qiao J., Ding S., Li C., Geisler M., Jiang D., Qi Y., Qian Q.	OsRLR4 binds to the OsAUX1 promoter to negatively regulate primary root development in rice.	J Integr Plant Biol	64(1)	118-134	2022	RAU1,SET33,RLR4	OsLAX1, OsRAU1, OsAUX1, LAX1, AUX1,OsSET33, OsSDG723, SDG723, OsTrx1, Trx1, OsTrx1/SDG723, DLN219, OsDLN219,OsRLR4, OsFYVE09, FYVE09, OsFYVE9, FYVE9
50776	34726307	Li Y., Ting-Ting Li, Xiao-Rong He, Zhu Y., Feng Q., Xue-Mei Yang, Xin-Hui Zhou, Guo-Bang Li, Yun-Peng Ji, Jing-Hao Zhao, Zhi-Xue Zhao, Pu M., Shi-Xin Zhou, Ji-Wei Zhang, Yan-Yan Huang, Fan J., Wen-Ming Wang	Blocking Osa-miR1871 enhances rice resistance against Magnaporthe oryzae and yield.	Plant Biotechnol. J.			2021	WRKY15,NAC4,FBOX11,ERF17,LRK2,AAP10C,WRKY71,MAS,MFAP1,MIR1871,WRKY45	OsWRKY15,OsNAC4, NAC68, ONAC068, OnNAC4*, OnNAC4, OsNAC4/ONAC068,OsFbox011, OsFbox11, Os_F0196, OsFBX7, FBX7,  OsFBX7, FBX7,OsERF#017, OsERF017, OsERF17, AP2/EREBP#091, AP2/EREBP91,OsLRK2, OsPSKR8, PSKR8,OsAAP10C, OsAAP5, AAP5,OsWRKY71, WRKY-71,OsMAS, MAS1, OsMAS1, OsMAS/SDR110C-MS1, SDR110C-MS1, OsSDR110C-MS1, OsMS1, MS1,OsMFAP1,miR1871, osa-miR1871, osa-MIR1871,OsWRKY45, OsWRKY45-1, OsWRKY45-2, WRKY45-1, WRKY45-2
50777	34767152	Che R., Hu B., Wang W., Xiao Y., Liu D., Yin W., Tong H., Chu C.	pollen sterility, a novel suppressor of cell division, is required for timely tapetal programmed cell death in rice.	Sci China Life Sci			2021	POST	OsPOST
50778	34823144	Gu X., Gao S., Li J., Song P., Zhang Q., Guo J., Wang X., Han X., Wang X., Zhu Y., Zhu Z.	The bHLH transcription factor regulated gene OsWIH2 is a positive regulator of drought tolerance in rice.	Plant Physiol. Biochem.	169	269-279	2021	BHLH143,WIH2	OsbHLH143, OsbHLH130, bHLH130,OsWIH2
50779	34829996	Zhou H., Zhou Y., Zhang F., Guan W., Su Y., Yuan X., Xie Y.	Persulfidation of nitrate reductase 2 Is Involved in l-Cysteine Desulfhydrase-Regulated Rice drought tolerance.	Int J Mol Sci	22(22)		2021	DREB1A,BZIP23,APX1,_,CATA,LCD1	OsDREB1A, Os DREB1A, CBF3, OsCBF3, OsDREB1A/OsCBF3, ERF24, OsERF24, OsERF024, OsERF#024, AP2/EREBP#114, AP2/EREBP114, OsDREBL,OsbZIP23, OsAREB1, OsABF2, Osbzip23, OsAREB2, OsZIP23, ZIP23,OsAPX1, APXa, OsAPXa, OsAPx01, OsAPx1, OSAPX1, APx1, cAPX, APX2, cAPXa, OscAPXa,OsNIA1, OsNia1, NIA1, Nia1, OsNR, NR, OsNR2, NR2, NIA2,CATA1, Cat A1*, OSCAT-A, Cat2, CatA1, CAT-A, OsCatA, OsCAT, CAT, catA, OSCATA, OsCATc, OsCATA, OsCAT1A, CAT1, OsCAT1, OsCATC, OsCAT2,OsLCD1
50780	34839574	Chi-Yeol Kim, Ju-Young Park, Choi G., Kim S., Kieu Thi Xuan Vo, Jong-Seong Jeon, Kang S., Yong-Hwan Lee	A rice gene encoding glycosyl hydrolase plays contrasting roles in immunity depending on the type of pathogens.	Mol. Plant Pathol.	23(3)	400-416	2022	MORE1F,MORE1E,MORE1I,SS,MORE1J,MORE1B,MORE1D,MORE1L,MORE1C,MORE1K,MORE1G,MORE1H,MORE1A	OsMORE1f,OsMORE1e,XYH, OsMORE1i,OsXYN1,  OsXyn1, XYN1, OsSS, OsMORE1m, MORE1m,OsMORE1j,OsMORE1b,OsMORE1d,OsMORE1l,OsMORE1c,OsMORE1k,OsMORE1g,OsMORE1h,OsMORE1a
50781	34702740	Liu Y., Zhang X., Yuan G., Wang D., Zheng Y., Ma M., Guo L., Bhadauria V., Peng Y.L., Liu J.	A designer rice NLR immune receptor confers resistance to the rice blast fungus carrying noncorresponding avirulence effectors.	Proc. Natl. Acad. Sci. U.S.A.	118(44)		2021	RGA5	Os11gRGA5, OsRGA5, RGA5-A, RGA5-B, Pi5, Pias-2
50782	34740243	Xie F., Wang S., Beavis W.D., Xu S.	Estimation of genetic variance contributed by a quantitative trait locus: correcting the bias associated with significance tests.	Genetics	219(3)		2021		
50783	34806842	Sanchez J., Kaur P.P., Pabuayon I.C.M., Karampudi N.B.R., Kitazumi A., Sandhu N., Catolos M., Kumar A., de Los Reyes BG.	DECUSSATE network with flowering genes explains the variable effects of qDTY12.1 to rice yield under drought across genetic backgrounds.	Plant Genome	15(1)	e20168	2022		
50784	34826703	Zhang G., Shen T., Ren N., Jiang M.	Phosphorylation of OsABA2 at Ser197 by OsMPK1 regulates abscisic acid biosynthesis in rice.	Biochem. Biophys. Res. Commun.	586	68-73	2022		
50785	34830102	Tang L., Xu H., Wang Y., Wang H., Li Z., Liu X., Shu Y., Li G., Liu W., Ying J., Tong X., Yao J., Xiao W., Tang S., Ni S., Zhang J.	OsABF1 Represses Gibberellin Biosynthesis to Regulate plant height and Seed Germination in Rice (<i>Oryza sativa</i> L.).	Int J Mol Sci	22(22)		2021	KO4,GA2OX1,KO5,SD1,KS1,GA2OX3,GA2OX5,BZIP12,EMF2B	OsKO4, OsKOL4, KOS1, CYP701A8, OsCYP701A8, OsKO2, CYP701A8/OsKOL4,OsGA2ox1, ga2ox-1, OsGA2ox-1, ga2ox, ga2ox 1, GA2ox1,OsKO5, OSKOL5, KOS2, OsKOS2, CYP701A9, OsCYP701A9, OsKO1, KO1,sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2, OsPHQ1, OsPHq1, PHq1,OsKS1, KS1, KS1A, KSL1, OsKSL1, OsKS1A, OsKS1B, OsKS1C, Ks1, Os KS1, OsTPS26, TPS6, OsTPS6,OsGA2ox3, ga2ox 3, OsGA2ox-3, GA2ox3, GA2ox-3, GA2ox4,OsGA2ox5, 2-ODD32, Os2-ODD32, 2ODD32, Os2ODD32,OsbZIP12, OsABF1, ABF1, OsOSE2, OSE2, OsbZIP12/OsABF1,OsEMF2b, EMF2b, GW9, OsGW9, GW9/OsEMF2b 
50786	34834796	Ye S., Huang Z., Zhao G., Zhai R., Ye J., Wu M., Yu F., Zhu G., Zhang X.	Differential Physiological Responses to Salt Stress between Salt-Sensitive and Salt-Tolerant <i>japonica</i> Rice Cultivars at the Post-Germination and Seedling Stages.	Plants (Basel)	10(11)		2021	HKT4,LCS,HAK5,HKT1,SOS1	OsHKT4, OsHKT1;1, HKT1;1, OsHKT2, RNC4, OsHKT1;1-FL, OsHKT1;1-V1, OsHKT1;1-V2, OsHKT1;1-V3, OsHKT1;1-V4, OsHKT1;1-V5, OsHKT1;1-V6, OsHKT1;1-V7, OsHKT1;1-V8,OsHAK1, HAK1,OsHAK5, FCO13, OsFCO13,OsHKT1, OsHKT2;1, HKT2;1, Ni (Nipponbare)-OsHKT1, Po (Pokkali)-HKT1, OsHKT1;1, HKT1;1,OsSOS1, OsNHA1, NHA1, SOS1/NHX7, NHX7, OsNHX7
50787	34618083	Xie W., Ke Y., Cao J., Wang S., Yuan M.	Knock out of transcription factor WRKY53 thickens sclerenchyma cell walls, confers bacterial blight resistance.	Plant Physiol.	187(3)	1746-1761	2021		
50788	34786790	Bang S.W., Choi S., Jin X., Jung S.E., Choi J.W., Seo J.S., Kim J.K.	Transcriptional activation of rice CINNAMOYL-CoA REDUCTASE 10 by OsNAC5, contributes to drought tolerance by modulating lignin accumulation in roots.	Plant Biotechnol. J.	20(4)	736-747	2022	CCR10,CCR5,CCR7,CCR21,CCR3,SNL6,CCR27,CCR26,CCR8,CCR23,CCR28,CCR29,CCR1,NAC5,CCR16,CCR6,CCR13,CCR17,CCR19,CCR22,CCR24,CCR11,CCR12,CCR20,CCR15,CCR18	OsCCR10, CCR10,OsCCR5, OsCCR2, CCR2,OsCCR7,OsCCR21 ,OsCCR3,Snl6, OsSNL6, OsCCR2, CCR2 ,OsCCR27,OsCCR26,OsCCR8,OsCCR23,OsCCR28,OsCCR29, OsDFR6, DFR6,OsCCR1,OsNAC5, NAC71, ONAC071, ONAC009, ONAC9, ONAC020, ONAC20, OnNAC5*, OnNAC5, OsNAC5/ONAC009,OsCCR16,OsCCR6,OsCCR13,OsCCR17,OsCCR19 ,OsCCR22,OsCCR24,OsCCR11,CCR1, OsCCR1, OsCCR12,OS-CCR, OsCCR, CCR, OsCCR20, OsCCR14, CCR14 ,OsCCR15, OsDFR8, DFR8,OsCCR, CCR, OsCCR18
50789	34868124	Lu S., Gao C., Wang Y., He Y., Du J., Chen M., Zhao H., Fang H., Wang B., Cao Y.	Phylogenetic Analysis of the Plant U2 snRNP Auxiliary Factor Large Subunit A Gene Family in Response to Developmental Cues and Environmental Stimuli.	Front Plant Sci	12	739671	2021	U2AF65A	OsU2AF65A
50790	34821996	Zhong R., Cui D., Phillips D.R., Sims N.T., Ye Z.H.	Functional analysis of GT61 glycosyltransferases from grass species in xylan substitutions.	Planta	254(6)	131	2021	XAT4,XAT6,XAT7,XAT5	OsXAT4,OsXAT6,OsXAT7,OsXAT5
50791	34727228	Hu J., Huang L., Chen G., Liu H., Zhang Y., Zhang R., Zhang S., Liu J., Hu Q., Hu F., Wang W., Ding Y.	The Elite Alleles of OsSPL4 Regulate grain size and Increase Grain Yield in Rice.	Rice (N Y)	14(1)	90	2021	RAG,CYCD3;1,CFO1,BHLH31,_,GIF3,LAC15,RGB1,DEP1,GW7,RFL,CDKB2;1 ,_,CYCD2;1,MADS55,MADS31,SPL4,MADS22,RGG2,FZP,MADS37	MADS3, OsMADS3, OsMADS3(t), RMADS222, RAG1, rf3,CycD3;1, CycD3;os;1, Orysa;CycD3;1, Orysa;CYCD3;1, CycD3-1, OsCycD3-1, OsCYCD3;2, CYCD3;2,OsMADS32, MADS32, OsCFO1, CFO1/OsMADS32, TRI1, OsTRI1 , OsMADS32/CFO, CFO, OsCFO,OsbHLH031, bHLH031, bHLH31, BIM2, OsBIM2,OsMADS69, MADS69,OsGIF3, OsGIF1, GIF1, MKB3,OsLAC, LAC, OsLAC15, OsLAC13, LAC13 ,OsWD40-80, RGbeta1, OsRGB1,  OsDWD38, DWD38,OsDEP1, EP, qPE9-1, DN1, DEP1/DN1/qPE9-1, qNGR9, qDEP1, RGG4/DEP1/DN1/qPE9-1/OsGGC3, RGG4, OsDN1, OsGGC3, GGC3,GL7, OsGL7, OsGW7, qGW7, qGL7, SLG7, GL7/GW7/SLG7, qPY7, GL7/SLG7, Chalk7, OsChalk7,RFL, OSL, FL, APO2, APO2/RFL, SSC, SSC/RFL/APO2, OsRFL, OsFL, OsAPO2, OsSSC,Orysa;CDKB2;1, OsCDKB2;1, cdc2Os3, Oscdc20s-3, cdc20s-3, Orysa;CDKB;2, CYCB2.1, CDKB-2, OsCDKB-2,OsCYCA3-1, CYCA3-1,CycD2;1, CYCD2-1, OsCYCD2-1, Orysa;CycD2;1, Orysa;CYCD2;1, Orysa;CycD2;2, OsCYCD2;2, CYCD2;2,OsMADS55, DLN163, OsDLN163,OsMADS31,OsSPL4,OsMADS22, RMD1, DLN68, OsDLN68,OsRGG2,fzp*, fzp, OsBD1, BD1, OsERF#078, OsERF078, OsERF78, ERF78, AP2/EREBP#133, AP2/EREBP133, BFL1, SGDP7, OsSGDP7,OsMADS37, DLN217, OsDLN217
50792	34830475	Gao Q., Liu L., Zhou H., Liu X., Li W., Min Y., Yan Y., Ji J., Zhang H., Zhao X.	Mutation in <i>OsFWL7</i> Affects Cadmium and Micronutrient Metal Accumulation in Rice.	Int J Mol Sci	22(22)		2021	COPT5,HMA5,GSD1,LP1,HMA2,PHB1,FWL6,FWL3,TGW2,FWL4,PHB2,PCR1,FWL7,FWL2	OsCOPT5,OsHMA8, osHMA5, HMA8, OsHMP27, HMP27,OsREM6.6, REM6.6, OsGSD1,OsREM5.3, REM5.3, OsLP1,OsHMA2, osHMA2, OsHMA2v ,OsPHB1,OsFWL6, OsCNR10, CNR10, OsFWL5/OsPCR1, OsFWL5, OsPCR1, FWL5, PCR1 ,OsFWL3, OsFWL2/OsPCR5, OsFWL2, OsPCR5, FWL2, PCR5,OsFWL1, FWL1, OsTGW2, OsCNR1, CNR1, OsPCR3, PCR3, OsFWL3, FWL3,OsFWL4, OsFWL8, FWL8,OsPHB2,OsFWL5, FWL5, OsPcr1, OsPCR1, OsFWL5/OsPCR1, OsFWL7, FWL7,OsFWL7, PGPS/D12, PGPS, D12, OsFWL6, FWL6,OsFWL2, OsPCR1, PCR1, OsFWL1, FWL1
50793	34825994	Wang D., Liu Z., Xiao Y., Liu X., Chen Y., Zhang Z., Kang H., Wang X., Jiang S., Peng S., Tan X., Zhang D., Liu Y., Wang G.L., Li C.	Association Mapping and Functional Analysis of Rice cold tolerance QTLs at the Bud Burst Stage.	Rice (N Y)	14(1)	98	2021	PP2C9,BZIP46,RAB11C1,PYL/RCAR3	OsPP15, PP15, OsPP2C09, PP2C09, OsPP2C9, OsPP2C3,ABL1, bZIP46, OsABL1, OsbZIP46, OsAREB8, OsABF2, ABF2, OsABF3, ABF3, OsbZIP46CA1, OsZIP46, ZIP46, OsbZIP46/OsABF2,OsRab11C1,OsPYL/RCAR3, PYL3, OsPYL3, OsPYL10, PYL10, OsRCAR1, RCAR1 
50794	34827708	Yang J., Li C., Zhang Y.	Engineering of <i>Saccharomyces cerevisiae</i> for 24-Methylene-Cholesterol Production.	Biomolecules	11(11)		2021	DHCR7	OsDHCR7
50795	34917058	Sahu K.P., Patel A., Kumar M., Sheoran N., Mehta S., Reddy B., Eke P., Prabhakaran N., Kumar A.	Integrated Metabarcoding and Culturomic-Based Microbiome Profiling of Rice Phyllosphere Reveal Diverse and Functional Bacterial Communities for blast disease Suppression.	Front Microbiol	12	780458	2021	EDS1,PR1-12,CEBIP,CERK1,NH2,CAL1,PAD4	OsEDS1,OsPR1#012, PR1#012, OsPR1-12, OsPR1.1, PR1.1,CEBiP, Os-LYP1, LYP1, OsCEBiP,OsCERK1, OsLysM-RLK9, Os-CERK1, Os-LysM-RLK9, OsLysMRLK9, OsCERK1/OsLYK9, OsLYK9, LYK9,OsNH2, OsNPR2, NPR2, OsNPR2/NH2, DLN21, OsDLN21, PR2, OsNPR1, NPR1,  OsBTBA2, BTBA2, OsNPR3, NPR3,OsCPT1, CPT1, DEFL7, OsDEFL7, OsDf-07, Df-07, OsPR12, PR12, DEF7, OsDEF7, OsAFP1, AFP1, OsPDF2.2, PDF2.2,OsPAD4
50796	34830062	Ye M., Kuai P., Chen S., Lin N., Ye M., Hu L., Lou Y.	Silencing a Simple extracellular leucine-rich repeat Gene <i>OsI-BAK1</i> Enhances the Resistance of Rice to Brown Planthopper <i>Nilaparvata lugens</i>.	Int J Mol Sci	22(22)		2021	WRKY24,ACO2,MSRMK2,WRKY70,WRKY53,ACS1,BAK1,ERF2	OsWRKY24,OsACO2, OsACO1,OsMSRMK2, OsMAPK5, OsMAP1, OsMPK3, OsBIMK1, OsMAPK2, MPK5, BIMK1, MAPK2, MAPK5, MPK3, OsMPK5, OsMAPK3, OsMAPK5b, MAPK3,OsWRKY70,OsWRKY53, WRKY-53,ACC1*, OsACS1, Os-ACS1, ACC1, OsACC1,OsI-BAK1, I-BAK1, OsBAK1,OsWR4, WR4, OsERF#002, OsERF002, ERF002, OsERF2, AP2/EREBP#100, AP2/EREBP100
50797	34798463	Gu P., Luo F., Tao W., Li Y., Wang D., Wu X., Ju X., Chao L., Zhang Y.	Higher nitrogen content and auxin export from rice tiller enhance low-ammonium-dependent tiller outgrowth.	J. Plant Physiol.	268	153562	2022		
50798	34842977	Wang X., Ren P., Ji L., Zhu B., Xie G.	OsVDE, a xanthophyll cycle key enzyme, mediates abscisic acid biosynthesis and negatively regulates salinity tolerance in rice.	Planta	255(1)	6	2021	NCED3,NCED2,RVDE1,NCED2	OSNCED3, OsNCED-3, OsNCED3, OsNCED3a, NCED3a, OsNCED4, NCED4, OsNECD2, OsNCED2b, NCED2b ,OSNCED2, OsNCED2, OsNCED5, NCED5,OsRVDE1, OsVDE, VDE,OsNCED2, OsNced2, OsCCD4b, CCD4b, OsCCD4c, CCD4c
50799	34946840	Jung Y.J., Go J.Y., Lee H.J., Park J.S., Kim J.Y., Lee Y.J., Ahn M.J., Kim M.S., Cho Y.G., Kwak S.S., Kim H.S., Kang K.K.	Overexpression of Orange Gene (<i>OsOr</i>-R115H) Enhances Heat Tolerance and Defense-Related Gene Expression in Rice (<i>Oryza sativa</i> L.).	Genes (Basel)	12(12)		2021	DREB1A,APX2,P5CS,CATA,OR,LEA3-1,ONAC2,_,DREB2A,CATB	OsDREB1A, Os DREB1A, CBF3, OsCBF3, OsDREB1A/OsCBF3, ERF24, OsERF24, OsERF024, OsERF#024, AP2/EREBP#114, AP2/EREBP114, OsDREBL,OsAPX2, OsAPx02, APXb, OsAPx2, OSAPX2, APx2, cAPX, OsAPX1, APX1,OsP5CS, P5CS1, OsP5CS1, OsALDH18B1, ALDH18B1, OsP5CS-1, P5CS-1,CATA1, Cat A1*, OSCAT-A, Cat2, CatA1, CAT-A, OsCatA, OsCAT, CAT, catA, OSCATA, OsCATc, OsCATA, OsCAT1A, CAT1, OsCAT1, OsCATC, OsCAT2,Osor,OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3, OsLEA3A, LEA3A,SNAC1, snac1, OsNAC9, ONAC002, ONAC2, ONAC033, ONAC33, ONAC043, ONAC43, ONAC044, ONAC44, OsNAC19, NAC19, SNAC1/ONAC002, OsSNAC1, OsNAC9, OsNAC1,SOD, OsSOD-Cu/Zn, SOD-Cu/Zn, OsaCCS, OsCCS, CCS,OsDREB2A, OsDREB2a, ERF40, OsERF#040, OsERF040, OsERF40, AP2/EREBP#167, AP2/EREBP167,CatB, CAT-B, OsCatB, OsCATB, OsCAT1B, CAT1B, CAT2, OsCAT2
50800	34767634	Zhu W., Yang L., Wu D., Meng Q., Deng X., Huang G., Zhang J., Chen X., Ferr?ndiz C., Liang W., Dreni L., Zhang D.	Rice SEPALLATA genes OsMADS5 and OsMADS34 cooperate to limit inflorescence branching by repressing the TERMINAL FLOWER1-like gene RCN4.	New Phytol.	233(4)	1682-1700	2022		
50801	34846696	Cong W., Li N., Wang J., Kang Y., Miao Y., Xu C., Wang Z., Liu T., Gong L., Liu B., Ou X.	Genome-wide locus-specific DNA methylation repatterning may facilitate rapid evolution of mercury resistance in rice.	Genes Genomics	44(3)	299-306	2022		
50802	34829686	Mostofa M.G., Ha C.V., Rahman M.M., Nguyen K.H., Keya S.S., Watanabe Y., Itouga M., Hashem A., Abd Allah EF., Fujita M., Tran L.P.	Strigolactones Modulate Cellular Antioxidant Defense Mechanisms to Mitigate Arsenate Toxicity in Rice Shoots.	Antioxidants (Basel)	10(11)		2021	SODA1,MRP1,D17,GSTU30,GR3,GR2,GPX5,APX1,HAC1;2,SODCC1,GSTU37,SODCC2,HAC1;1 ,APX2,D10,GS1 ,PCS1	SodA1, OsSODA1, Mn-SOD, Mn- SOD, OsMSD, MnSOD, OsMnSOD, MnSOD1, OsMnSOD1,OsABCC1, ABCC1, OsABCC1-1, OsABCC1-2, OsMRP1,d17(t), dwf14, d17, htd1, OsCCD7, CCD7, D17/HTD1, HTD1, OsHTD1, OsD17,OsGSTU30,OsGR3,OsGR2, RGRC2, OsGR, OsGR3, OsRGRC2,OsGpx5, GPX5, OsGPx05,OsAPX1, APXa, OsAPXa, OsAPx01, OsAPx1, OSAPX1, APx1, cAPX, APX2, cAPXa, OscAPXa,OsStr6, STR6, OsRhST, RLD, OsHAC1;2,sodCc1, SODCC.1, sodA, RSODA, OsSOD1, OsCSD2, OsSodA, SodCc2, OsSODA1, SODCc1-Cu/Zn, OsCu/Zn-SOD2, Cu/Zn-SOD2, OsCSD1.2, CSD1.2, OsSODCc1-Cu/Zn, SODCc1-Cu/Zn, CuZnSOD1, Cu/ZnSOD1, OsCu/ZnSOD1, OsCSD4, CDS4, CuZnSOD4, OsCuZnSOD1, OsCSD1, CSD1, OsSOD2,OsGSTU37,Cu/Zn-SOD, Cu/Zn- SOD, OsCu-ZnSOD2, Cu-ZnSOD2, OsSODB, OsSOD3, SodCc2, Os SodCc2, sodB, OsSodB, RSODB, OssodCc1, OsCSD1.1, CSD1.1, OsCDS1, OsSOD3-CU/Zn, SOD3-CU/Zn, CuZnSOD2, Cu/ZnSOD2, OsCu/ZnSOD2, OsCSD1, CSD1, CuZnSOD1, OsCuZnSOD2, OsCSD4, CSD4, OsCSD3, CSD3, Cu/Zn-SOD3,OsStr5, STR5, OsHAC1;1,OsAPX2, OsAPx02, APXb, OsAPx2, OSAPX2, APx2, cAPX, OsAPX1, APX1,d10(d15,d16), d16, d15, dwf9, d10, OsCCD8b, OsCCD8, CCD8, OsD10,OsGS1, OsGS2, OsGSH2,OsPCS1, OsPCS2, PCS2, OsPCS15, PCS15
50803	34800972	Zhang X., Long Y., Chen X., Zhang B., Xin Y., Li L., Cao S., Liu F., Wang Z., Huang H., Zhou D., Xia J.	A NAC transcription factor OsNAC3 positively regulates ABA response and salt tolerance in rice.	BMC Plant Biol.	21(1)	546	2021	SKC1,PP2C1,LEA3-1,NAC3,HKT7,PM1,RAB16A	OsHKT8, HKT8, Os-HKT1;5, OsHKT1;5, HKT1;5, SKC1, qSKC-1(t), OsSKC1,OsPP2C1, OsSIPP2C1, SIPP2C1, OsPP2C68, PP2C68, OsPP108,OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3, OsLEA3A, LEA3A,OsNAC3, NAC67, ONAC067, OnNAC3*, OsNAC3/ONAC067, DLN180, OsDLN180,OsHKT7, OsHKT1;4, HKT1;4,AWPM-19, PM19, OsPM1, OsPM-1, OsPM19L1, PM19L1, OsAWPM-19, OsPM19,Rab16A, rab21, RAB21, OsRab21, OsRAB21, OsRAB-21, OsRab16A, OsLEA29, rab16A, OsRAB16A
50804	34769518	Kim M.S., Kang K.K., Cho Y.G.	Molecular and Functional Analysis of U-box E3 Ubiquitin Ligase Gene Family in Rice (<i>Oryza</i><i>sativa</i>).	Int J Mol Sci	22(21)		2021	PUB45,RLCK93,PUB7,PUB39,RLCK280,RLCK305,PUB19,PUB18,PUB66,PUB10,PUB5,RHS1,RLCK197,PUB37,PUB3,PUB38,PUB42,PUB8,PUB12,PUB14,RLCK307,PUB73,RLCK91,RLCK81,ELF1,PUB31,PUB6,PUB13,PUB77,RLCK281,RLCK207,PUB20,RLCK194,PUB16,PUB4,PUB24,SPL11,PUB40,PUB9,PUB32,RLCK306,PUB46,PUB44,PUB69,PUB15,PUB23,PUB33,PUB17,PUB36,PUB25,PUB35,PUB76,PUB28,PUB34,PUB68,PUB2,PUB65,PUB30,PUB26,UPS,PUB71,RLCK69,PUB72,PUB74,PUB22,PUB58,PUB21,PUB64,RLCK111,PUB29,PUB1,RLCK285,PUB67,PUB63,PUB60,RLCK112,PUB43	OsPUB45, P3IP1, OsP3IP1,  OsPUB45/P3IP1, PUB45/P3IP1,OsPUB50, PUB50, OsRLCK93,OsPUB7, OsPUB07, PUB07,OsPUB39,  OsPUB39, PUB39,OsPUB52, PUB52, OsRLCK280, OsUSP33, USP33,  OsPUB52, PUB52,OsPUB53, PUB53, OsRLCK305, OsMed2_1, Med2_1 ,  OsPUB53, PUB53,OsPUB19,  OsPUB19, PUB19,OsPUB18,  OsPUB18, PUB18,OsPUB66,OsPUB10,  OsPUB10, PUB10,OsPUB5, OsPUB05,  OsPUB5, PUB5,OsRHS1, OsPUB27, PUB27,OsPUB70, PUB70, OsRLCK197, UCIP19, OsUCIP19,  OsPUB70, PUB70, OsBSK5, BSK5,OsPUB37,  OsPUB37, PUB37,OsPUB3, OsPUB03,  OsPUB3, PUB3,OsPUB38,  OsPUB38, PUB38,OsPUB42,OsPUB8, OsPUB08,  OsPUB8, PUB8,OsPUB12,  OsPUB12, PUB12,OsPUB14,  OsPUB14, PUB14,OsPUB49, PUB49, OsRLCK307, OsUSP38, USP38,  OsPUB49, PUB49,OsPUB73,OsPUB62, PUB62, OsRLCK91,  OsPUB62, PUB62,OsPUB55, PUB55, OsRLCK81,  OsPUB55, PUB55,OsPUB31, PUB31, OsPUB75, PUB75, TUD1, OsTUD1, DSG1,  OsPUB75, PUB75,OsPUB31,  OsPUB31, PUB31,OsPUB6, OsPUB06,  OsPUB6, PUB6,OsPUB13, OsSTA182,  OsPUB13, PUB13,OsPUB77, OsEnS-73,  OsPUB77, PUB77,OsPUB56, PUB56, OsRLCK281, OsUSP34, USP34,  OsPUB56, PUB56,OsPUB47, PUB47, OsRLCK207, OsUSP29, USP29,  OsPUB47, PUB47,OsPUB20,  OsPUB20, PUB20,OsPUB51, PUB51, OsRLCK194, OsUSP27, USP27,  OsPUB51, PUB51,OsPUB16,  OsPUB16, PUB16,OsPUB4, OsPUB04,  OsPUB4, PUB4,OsPUB24,spl11, spl11*, OsPUB11, PUB11,  OsPUB11/SPL11, PUB11/SPL11,OsPUB40,  OsPUB40, PUB40,OsPUB9, OsPUB09,  OsPUB9, PUB9,OsPUB32,  OsPUB32, PUB32,OsPUB54, PUB54, OsRLCK306,  OsPUB54, PUB54,OsPUB46,OsPUB44,OsPUB69,  OsPUB69, PUB69,OsPUB15,  OsPUB15, PUB15,OsPUB23,OsPUB33,  OsPUB33, PUB33,OsPUB17,  OsPUB17, PUB17,OsPUB36,  OsPUB36, PUB36,OsPUB25,  OsPUB25, PUB25,OsPUB35,  OsPUB35, PUB35,OsPUB76,  OsPUB76, PUB76,OsPUB28, OsPUB45, PUB45,  OsPUB28, PUB28,OsPUB34,  OsPUB34, PUB34,OsPUB68,  OsPUB68, PUB68,OsPUB2, OsPUB02,  OsPUB2, PUB2,OsPUB65,  OsPUB65, PUB65,OsPUB30,  OsPUB30, PUB30,OsPUB26,  OsPUB26, PUB26,OsUPS, OsPUB41, PUB41, CMPG1, OsCMPG1,OsWD40-9, OsPUB71,  OsPUB71, PUB71,OsPUB48, PUB48, OsRLCK69, OsUSP10, USP10,  OsPUB48, PUB48,OsWD40-178, OsPUB72,  OsDWD6, DWD6,  OsPUB72, PUB72,OsPUB74,  OsPUB74, PUB74,OsPUB22,  OsPUB22, PUB22,OsPUB58,OsPUB21,  OsPUB21, PUB21,OsPUB64, OsHOP1, HOP1,  OsPUB64, PUB64,OsPUB59, PUB59, OsRLCK111,  OsPUB59, PUB59,OsPUB29,  OsPUB29, PUB29,OsPUB1, OsPUB01, OsUFD2,  OsPUB1, PUB1,OsPUB61, PUB61, OsRLCK285, OsUSP35, USP35,  OsPUB61, PUB61,OsPUB67,OsPUB63,  OsPUB63, PUB63,OsPUB60, UCIP6, OsUCIP6,  OsPUB60, PUB60,OsPUB57, PUB57, OsRLCK112,  OsPUB57, PUB57,OsPUB43,  OsPUB43, PUB43
50805	34758742	Milner M.J., Bowden S., Craze M., Wallington E.J.	Ectopic expression of TaBG1 increases seed size and alters nutritional characteristics of the grain in wheat but does not lead to increased yields.	BMC Plant Biol.	21(1)	524	2021		
50806	34607677	Chen H., Liang X., Gong X., Reinfelder J.R., Chen H., Sun C., Liu X., Zhang S., Li F., Liu C., Zhao J., Yi J.	Comparative physiological and transcriptomic analyses illuminate common mechanisms by which silicon alleviates cadmium and arsenic toxicity in rice seedlings.	J Environ Sci (China)	109	88-101	2021		
50807	34899804	Dutta M., Saha A., Moin M., Kirti P.B.	Genome-Wide Identification, Transcript Profiling and Bioinformatic Analyses of GRAS transcription factor Genes in Rice.	Front Plant Sci	12	777285	2021	HAM1,GRAS26,GRAS20,GRAS23,GRAS37,GRAS56,HAM3,RAM1,GRAS16,CIGR1,PSIGRAS2,PH1,GRAS10,GRAS12,GRAS17,SLRL1,GRAS35,PSIGRAS5,GRAS2,SHR2,PSIGRAS3,GRAS28,CIGR2,SLR1,GRAS45,GRAS31,GRAS43,SHR1,WG3,NSP2,GRAS27,GRAS55,GRAS6,SCR1,GRAS7,GRAS42,PSIGRAS9,GRAS29,GRAS46,GRAS49	OsSCL1, SCL1, OsHAM1, OsGRAS-9, OsGRAS-9, GRAS-9, GRAS9, OsGRAS8, GRAS8, SCL6-II, OsSCL6-II,OsGRAS-26, OsGRAS26, GRAS-26, DLN137, OsDLN137, OsGRAS23, GRAS23 ,OsGRAS-20, OsGRAS20, GRAS-20, OsGRAS19, GRAS19 ,OsGRAS23, OsGRAS-23, GRAS-23, OsGRAS22, GRAS22 ,OsGRAS-37, OsGRAS37, GRAS-37, OsGRAS35, GRAS35 ,OsGRAS-56, OsGRAS56, GRAS-56, DLN259, OsDLN259, OsGRAS53, GRAS53,OsHAM3, OsGRAS-21, OsGRAS21, GRAS-21, GRAS21, OsGRAS20, GRAS20 ,OsRAM1, OsGRAS43, GRAS43,AM18, OsAM1, OsGRAS-16, OsGRAS16, GRAS-16, PsiOsGRAS4, , PsiGRAS4  ,OsCIGR1, OsGRAS-34, OsGRAS34, GRAS-34, GRAS34,PsiOsGRAS2, PsiGRAS2 ,SCL1, OsSCL1, OsGRAS-3, OsGRAS3, GRAS-3, GRAS3, OsPH1,  ph1, CIGR, OsCIGR,OsGRAS-10, OsGRAS10, GRAS-10,OsGRAS-12, OsGRAS12, GRAS-12, OsGRAS11, GRAS11 ,OsSCL14, SCL14, OsGRAS-17, OsGRAS17, GRAS-17, DLN96, OsDLN96, OsGRAS15, GRAS15 ,OsSLRL1, OsGAI, OsSLRL, OsGRAS-1, OsGRAS1, GAI, SLRL, GRAS-1, GRAS1,OsGRAS-35, OsGRAS35, GRAS-35, OsGRAS32, GRAS32 ,PsiOsGRAS5, PsiGRAS5,OsGRAS-2, OsGRAS2, GRAS-2,OsSHR2, OsGRAS-15, OsGRAS15, GRAS-15, GRAS15,PsiOsGRAS3, PsiGRAS3,OsGRAS-28, OsGRAS28, GRAS-28, OsGRAS25, GRAS25 ,OsCIGR2, OsGRAS-36, OsGRAS36, GRAS-36, GRAS36,slr1-1, slr1, slr, GAI, OsGAI, OsSLR1, Os SLR1, OsRGA1, OsGRAS-18, OsGRAS-18, GRAS-18, GRAS18, SLR-1,OsGRAS-45, OsGRAS45, GRAS-45, DLN246, OsDLN246, OsGRAS41, GRAS41 ,OsGRAS-31, OsGRAS31, GRAS-31, OsGRAS28, GRAS28, SCL6-I, OsSCL6-I,OsGRAS-43, OsGRAS43, GRAS-43, OsGRAS39, GRAS39 ,OsSHR1, OsGRAS-38, OsGRAS38, GRAS-38, GRAS38, DLN189, OsDLN189, OsSHR, SHR,OsSCRL, SCRL, Os-SCL7, OsSCL7, SCL7, OsGRAS-19, OsGRAS19, GRAS-19, GRAS19, OsGRAS18, GRAS18 ,Os NSP2, OsNSP2, OsGRAS-13, OsGRAS13, GRAS-13, GRAS13, OsGRAS12, GRAS12,OsGRAS-27, OsGRAS27, GRAS-27, OsGRAS24, GRAS24 ,OsGRAS-55, OsGRAS55, GRAS-55, PsiOsGRAS10, PsiGRAS10,OsGRAS-6, OsGRAS6, GRAS-6, OsGRAS5, GRAS5 ,OsSCR1, OsSCR, OsGRAS-41, OsGRAS41, GRAS-41, GRAS41,OsGRAS-7, OsGRAS7, GRAS-7,OsGRAS-42, OsGRAS42, GRAS-42, PsiOsGRAS8, PsiGRAS8 ,PsiOsGRAS9, PsiGRAS9,OsGRAS-29, OsGRAS29, GRAS-29, OsGRAS26, GRAS26 ,OsGRAS44, OsGRAS-44, GRAS-44, GRAS44, OsGRAS-46, OsGRAS46, GRAS-46,OsGRAS-49, OsGRAS49, GRAS-49, OsGRAS47, GRAS47
50808	34858455	Hu A., Zhao Q., Chen L., Zhao J., Wang Y., Feng K., Wu L., Xie M., Zhou X., Xiao L., Ming Z., Zhang M., Yao R.	Identification of Conserved and Divergent Strigolactone Receptors in Sugarcane Reveals a Key Residue Crucial for Plant Branching Control.	Front Plant Sci	12	747160	2021		
50809	34725746	Anum J., O'Shea C., Zeeshan Hyder M., Farrukh S., Skriver K., Malik S.I., Yasmin T.	Germin like protein genes exhibit modular expression during salt and drought stress in elite rice cultivars.	Mol. Biol. Rep.	49(1)	293-302	2022		
50810	34815210	Yan L.Y., Zhang H.J., Zheng Y.Q., Cong Y.Q., Liu C.T., Fan F., Zheng C., Yuan G.L., Pan G., Yuan D.Y., Duan M.J.	Transcription factor OsMADS25 improves rice tolerance to cold stress.	Yi Chuan	43(11)	1078-1087	2021		
50811	34742240	Liu J., Meng Q., Xiang H., Shi F., Ma L., Li Y., Liu C., Liu Y., Su B.	Genome-wide analysis of Dof transcription factors and their response to cold stress in rice (Oryza sativa L.).	BMC Genomics	22(1)	800	2021	RDD2,DOF11,RPBF,DOF19,DOF5,RDD3,DOF17,DOF3,_,DOF2,DOF30,DOF13,DOF16,DOF4,DOF7,DOF18,DOF24,DOF25,DOF21,DOF28,DOF22,_,DOF20,SP3,DOF14,DOF29,RDD1,_,RDD4,DOF27	OsDof23, Dof23, OsDof-23, OsDof1, OsCDF3, CDF3, OsDof24, Dof24,OsDof11, Dof11, OsDof-11, OsDof13, Dof13,OsDof3, OsDOF3, OsEnS-34, OsDof10, Dof10, OsDof-10, OsDOF1, DOF1, DOF3, OsRPBF, OsDOF7,OsDof19, Dof19, OsDof-19 ,OsDof5, OsDof6, Dof6, OsDof-6, DOF6,OsDof26, Dof26, OsDof-26, OsDof27, Dof27,OsDof17, Dof17, OsDof-17, OsDof18, Dof18,OsDof3, Dof3, OsDof-3, OsDof1,OsDof5, Dof5, OsDof-5, OsDof4, Dof4,OsDof, OsDof2, Dof2, OsDof-2,OsDof30, Dof30, OsDof-30 ,OsDof13, Dof13, OsDof-13, OsDof14, Dof14,OsDof16, Dof16, OsDof-16,OsDof4, OsDof8, Dof8, OsDof-8, DOF8, OsDof10, Dof10,OsDof7, Dof7, OsDof-7, OsDOF11, DOF11, OsDof9, Dof9,OsDof18, Dof18, OsDof-18, DLN119, OsDLN119, OsDof17, Dof17,OsDof24, Dof24, OsDof-24, OsDof25, Dof25,OsDof25, Dof25, OsDof-25, OsDof26, Dof26,OsDof21, Dof21, OsDof-21, OsCDF2, CDF2, OsDof22, Dof22,OsDof28, Dof28, OsDof-28, OsDof29, Dof29,OsDof22, Dof22, OsDof-22, OsDof23, Dof23,OsDof1, Dof1, OsDof-1, OsDof6, Dof6,OsDof20, Dof20, OsDof-20, OsDof21, Dof21,OsDof15, Dof15, OsDof-15, DOF15,OsDof14, Dof14, OsDof-14, OsDof12, Dof12,OsDof29, Dof29, OsDof-29, OsDof20, Dof20, CRPG562, OsCRPG562,OsDof2, OsDof9, Dof9, OsDof-9, DLN64, OsDLN64, OsDof8, Dof8,OsDof4, Dof4, OsDof-4, Dof-4, OsDof3, Dof3,OsDof12, Dof12, OsDof-12, OsCDF1, OsCDF1/OsDOF12, OsDOF12, CDF1, DOF12, OsDof11, Dof11,OsDof27, Dof27, OsDof-27, OsDof28, Dof28
50812	34864385	Uawisetwathana U., Jamboonsri W., Bamrungthai J., Jitthiang P., Nookaew I., Karoonuthaisiri N.	Metabolite profiles of brown planthopper-susceptible and resistant rice (Oryza sativa) varieties associated with infestation and mechanical stimuli.	Phytochemistry	194	113044	2022		
50813	34876526	Song T., Shi Y., Shen L., Cao C., Shen Y., Jing W., Tian Q., Lin F., Li W., Zhang W.	An endoplasmic reticulum-localized cytochrome <i>b</i> 5 regulates high-affinity K+ transport in response to salt stress in rice.	Proc. Natl. Acad. Sci. U.S.A.	118(50)		2021	CYB5-10,CYB5-4,MSBP1,CYB5-8,MSBP2,SBP,CYB5-6,CYB5-5,CYB5-3,CYB5-7,CYB5-14,CYB5-1,CYB5-2,CYB5-11,HAK21	OsCYB5-10,OsCYB5-4,OsMSBP1, OsCYB5-12, CYB5-12,OsCYB5-8,OsMSBP2, OsMSBP1, OsCYB5-13, CYB5-13,OsSBP, OsCYB5-9, CYB5-9,OsCYB5-6,OsCYB5-5,OsCYB5-3,OsCYB5-7,OsCYB5-14,OsCYB5-1,OsCYB5-2,OsCYB5-11, Oscb5, cb5,OsHAK21
50814	34912119	Zhai K., Liang D., Li H., Jiao F., Yan B., Liu J., Lei Z., Huang L., Gong X., Wang X., Miao J., Wang Y., Liu J.Y., Zhang L., Wang E., Deng Y., Wen C.K., Guo H., Han B., He Z.	NLRs guard metabolism to coordinate pattern- and effector-triggered immunity.	Nature	601(7892)	245-251	2022		
50815	34498077	Wang W., Lu Y., Li J., Zhang X., Hu F., Zhao Y., Zhou D.X.	SnRK1 stimulates the histone H3K27me3 demethylase JMJ705 to regulate a transcriptional switch to control energy homeostasis.	Plant Cell	33(12)	3721-3742	2021		
50816	35340363	Raghuvanshi R., Srivastava A.K., Verulkar S., Suprasanna P.	Unlocking Allelic Diversity for Sustainable Development of Salinity Stress Tolerance in Rice.	Curr. Genomics	22(6)	393-403	2021		
50817	34862923	Wuyuntanmanda, Han F.X., Dun B.Q., Zhang J., Wang Z., Sui Y., Zhu L., Li G.Y.	Cloning and functional analysis of soluble acid invertase 2 gene (SbSAI-2) in sorghum.	Planta	255(1)	13	2021		
50818	34979446	Gupta R., Min C.W., Son S., Lee G.H., Jang J.W., Kwon S.W., Park S.R., Kim S.T.	Comparative proteome profiling of susceptible and resistant rice cultivars identified an arginase involved in rice defense against Xanthomonas oryzae pv. oryzae.	Plant Physiol. Biochem.	171	105-114	2022		
50819	34921476	Teng Z., Yu H., Wang G., Meng S., Liu B., Yi Y., Chen Y., Zheng Q., Liu L., Yang J., Duan M., Zhang J., Ye N.	Synergistic interaction between ABA and IAA due to moderate soil drying promotes grain filling of inferior spikelets in rice.	Plant J.	109(6)	1457-1472	2022		
50820	35053052	Ibrahim E.I., Attia K.A., Ghazy A.I., Itoh K., Almajhdi F.N., Al-Doss AA.	Molecular Characterization and Functional Localization of a Novel SUMOylation Gene in <i>Oryza sativa</i>.	Biology (Basel)	11(1)		2021	SLG	slg, Rurm1, Urm1, OsSUMO7, SUMO7
50821	34925430	Ding J., Karim H., Li Y., Harwood W., Guzm?n C., Lin N., Xu Q., Zhang Y., Tang H., Jiang Y., Qi P., Deng M., Ma J., Wang J., Chen G., Lan X., Wei Y., Zheng Y., Jiang Q.	Re-examination of the <i>APETALA2/Ethylene-Responsive Factor</i> Gene Family in Barley (<i>Hordeum vulgare</i> L.) Indicates a Role in the Regulation of Starch Synthesis.	Front Plant Sci	12	791584	2021		
50822	34800046	Zhang L., He G., Li Y., Yang Z., Liu T., Xie X., Kong X., Sun J.	PIL transcription factors directly interact with SPLs and repress tillering/branching in plants.	New Phytol.	233(3)	1414-1425	2022		
50823	34910270	Pan Z., Tan B., Cao G., Zheng R., Liu M., Zeng R., Wang S., Zhu H., Ye H., Zhao G., Cao W., Liu G., Zhang G., Zhou Y.	Integrative QTL Identification, Fine Mapping and Candidate Gene Analysis of a Major Locus qLTG3a for Seed Low-Temperature Germinability in Rice.	Rice (N Y)	14(1)	103	2021	DGD2A,RPN9B,_	OsDGD2alpha DGD2alpha, OsDGD2A, OsDGD1, DGD1,OsRpn9b, Rpn9b, RPN9a,
50824	34866195	Yao Y., Zhou J., Cheng C., Niu F., Zhang A., Sun B., Tu R., Wan J., Li Y., Huang Y., Xie K., Dai Y., Zhang H., Hong J.H., Pan X., Zhu J., Zhou H., Liu Z., Cao L., Chu H.	A conserved clathrin-coated vesicle component, OsSCYL2, regulates plant innate immunity in rice.	Plant Cell Environ.	45(2)	542-555	2022	SCYL2,VTI12,WRKY45,PR4,PR1B,AOS2,VTI11,CHC1,SH11,SPL28,_	OsSCYL2,OsVTI12,OsWRKY45, OsWRKY45-1, OsWRKY45-2, WRKY45-1, WRKY45-2,OsPR4, OsPR4a, PR4a, OsPR-4,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1, OsPR1a, PR1a,OsAOS2, CYP74A2, OsAOS, OsAOS1,OsVTI11,OsCHC1,OsJAmyb, JAmyb, OsJAMyb, OsMYB21, MYB21, Os2R_MYB91, 2R_MYB91, OgSH11, OsSH11,OsSPL28, PSL50, OsPSL50, AP1M1, OsAP1M1,OsPAL05, PAL05, OsPAL3, PAL5, PAL3, OsPAL2;3, PAL2;3, OsPAL2-1, PAL2-1
50825	34874506	Jing X.Q., Li W.Q., Zhou M.R., Shi P.T., Zhang R., Shalmani A., Muhammad I., Wang G.F., Liu W.T., Chen K.M.	Rice Carbohydrate-Binding Malectin-Like Protein, OsCBM1, Contributes to Drought-Stress Tolerance by Participating in NADPH oxidase-Mediated ROS Production.	Rice (N Y)	14(1)	100	2021	ROPGEF1,RBOHD,RAC1,MAPKKK4,RBOHC,MPK6,MAPKKK2,RBOHG,RPK3,ACDR1,RBOHA,MAPKKKEPSILON,ROPGEF7,RAC3	Os RopGEF1, OsRopGEF1, RopGEF1, OsRacGEF7, RacGEF7, OsGEF22, GEF22,rbohD, OsrbohD, Os rbohD, OsRbohD, OsNox4, OsRboh4, Rboh4,OsRAC1, OsRac1, Os Rac1, Rac1, Os-Rac1,OsMAPKKK4,rbohC, OsrbohC, Os rbohC, OsRbohC, OsNox5, Nox5, OsrbohD, OsRboh5, RBOHA, OsRboh5, Rboh5,OsMPK6, OsDR6, DR6, OsMPK4, MPK4, OsMAPK4, MAPK4,OsMAPKKK2,rbohG, OsrbohG, Os rbohG, OsRbohG, OsNox7, Nox7, OsrbohB, OsRBOHB, RBOHB, OsRboh7, Rboh7,OsRPK3, OsMRLK63, MRLK63, OsCBM1, CBM1, OsMRLP15, MRLP15,OsEDR1, OsACDR1, EDR1, OsMAPKKK1, MAPKKK1, SPL3, OsSPL3,rbohA, OsrbohA, Os rbohA, OsRbohA, OsNox2, Nox2, OsRboh2, Rboh2,OsMAPKKKepsilon, MAPKKKepsilon, OsMAPKKK24, MAPKKK24,Os RopGEF7, OsRopGEF7, RopGEF7, OsRacGEF2, RacGEF2, OsRacGEF1, RacGEF1, OsGEF20, GEF20,OsRac3
50826	34459895	Kaur A., Nijhawan A., Yadav M., Khurana J.P.	OsbZIP62/OsFD7, a functional ortholog of FLOWERING LOCUS D, regulates floral transition and panicle development in rice.	J. Exp. Bot.	72(22)	7826-7845	2021		
50827	34962599	Zhang J., Gao X., Cai G., Wang Y., Li J., Du H., Wang R., Zhang H., Huang J.	An adenylate kinase OsAK3 Involves Brassinosteroid Signaling and Grain Length in Rice (Oryza sativa L.).	Rice (N Y)	14(1)	105	2021	DWARF4,ILI6,BZR1,AK1,SGL,ADKA,SLG,GSK4,GS2,ILI1,BRD1,GW8,FWL3	OsDWARF4, osdwarf4, OsDWF4, DWF4, CYP90B2, OsCYP90B2, D4, OsD4,ILI6, OsILI6, PGL1, OsPGL1,OsBZR1, Os BZR1, OsBES1-6, BES1-6,OsAK1, OsAk2, Ak2,OsSGL,Adk-a, OsAdk-a, OsAK3, AK3,OsSLG,OsSK23/OsGSK4, OsSK23, OsGSK4, SK23, OsGSK3, GSK3,OsGRF4, GRF4, GS2/OsGRF4, PT2, GLW2, GS2/GL2, LGS1, OsLGS1,OsbHLH154, bHLH154, OsILI1,brd1, OsDWARF, DWARF, OsBR6ox, BR6ox, CYP85A1, CYP85A4, OsDWF, CYP85A1/OsDWARF, OsBRD1, OsCYP85A1,SPL16, OsSPL16, SLP1, OsSLP1, qGW8, OsGW8,OsFWL3, OsFWL2/OsPCR5, OsFWL2, OsPCR5, FWL2, PCR5
50828	34939275	Chakraborty K., Jena P., Mondal S., Dash G.K., Ray S., Baig M.J., Swain P.	Relative contribution of different members of OsDREB gene family to osmotic stress tolerance in indica and japonica ecotypes of rice.	Plant Biol (Stuttg)	24(2)	356-366	2022		
50829	34601582	Huang Y.N., Yang S.Y., Li J.L., Wang S.F., Wang J.J., Hao D.L., Su Y.H.	The rectification control and physiological relevance of potassium channel OsAKT2.	Plant Physiol.	187(4)	2296-2310	2021	CBL1,AKT2,CIPK23	OsCBL1, Os-CBL1,OsAKT2, ZMK2, OsZMK2, OsK3.1, K3.1,OsCIPK23, Os-CIPK23, OsSnRK3.23, SnRK3.23
50830	34936355	Ma L.Y., Zhang A.P., Liu J., Zhang N., Chen M., Yang H.	Minimized Atrazine Risks to Crop Security and Its Residue in the Environment by a Rice Methyltransferase as a Regulation Factor.	J. Agric. Food Chem.	70(1)	87-98	2022		
50831	34884830	Zhang Y., Chen M., Zhou S., Lou Y., Lu J.	Silencing an E3 Ubiquitin Ligase Gene <i>OsJMJ715</i> Enhances the Resistance of Rice to a Piercing-Sucking Herbivore by Activating ABA and JA Signaling Pathways.	Int J Mol Sci	22(23)		2021	JMJ715	OsJMJ715
50832	34879830	Zheng S., Lu J., Yu D., Li J., Zhou H., Jiang D., Liu Z., Zhuang C.	Hexokinase gene OsHXK1 positively regulates leaf senescence in rice.	BMC Plant Biol.	21(1)	580	2021	SGR,RBOHC,RBOHD,RBOHI,GABA-T,AMTR1,RBOHA,GLO1,HXK1,RBOHB,RBOHF,RBOHG	sgr(t), sgr, OsSGR, OsSgr, SGR1, OsSGR1,rbohC, OsrbohC, Os rbohC, OsRbohC, OsNox5, Nox5, OsrbohD, OsRboh5, RBOHA, OsRboh5, Rboh5,rbohD, OsrbohD, Os rbohD, OsRbohD, OsNox4, OsRboh4, Rboh4,OsrbohI, Os rbohI, rbohI, OsRbohI, OsRbohF, OsNOX8, NOX8, OsRboh8, Rboh8,Osl2, l2, OsGABA-T,Osh36, OsH36, H36, OsAMTR1,rbohA, OsrbohA, Os rbohA, OsRbohA, OsNox2, Nox2, OsRboh2, Rboh2,GLO1, OsGLO1,OsHXK1,rbohB, OsrbohB, Os rbohB, OsRbohB, OsNox1, Nox1, Os-RbohB, RbohB, OsRboh1, Rboh1,RbohF, rbohF, OsrbohF, Os rbohF, OsNox6, Nox6, OsrbohE, rbohE, OsRboh6, Rboh6,rbohG, OsrbohG, Os rbohG, OsRbohG, OsNox7, Nox7, OsrbohB, OsRBOHB, RBOHB, OsRboh7, Rboh7
50833	35151438	Zhang K., Shi W., Zheng X., Liu X., Wang L., Riemann M., Heintz D., Nick P.	A rice tubulin tyrosine ligase like 12 regulates phospholipase D activity and tubulin synthesis.	Plant Sci.	316	111155	2022		
50834	35008710	Li C., Wang X., Zhang L., Zhang C., Yu C., Zhao T., Liu B., Li H., Liu J.	OsBIC1 Directly Interacts with OsCRYs to Regulate leaf sheath Length through Mediating GA-Responsive Pathway.	Int J Mol Sci	23(1)		2021	CRY1B,BIC2,BIC1,CRY2,CRY1A	OsCRY1b, OsCRY2, CRY1b, CRY1, OsCCT1b, CCT1b,OsBIC2,OsBIC1,OsCRY2,OsCRY1a, OsCRY1, CRY1a, CRY2, OsCCT1a, CCT1a
50835	34956298	Wang H., Bi Y., Gao Y., Yan Y., Yuan X., Xiong X., Wang J., Liang J., Li D., Song F.	A Pathogen-Inducible Rice NAC transcription factor ONAC096 Contributes to Immunity Against <i>Magnaprothe oryzae</i> and <i>Xanthomonas oryzae</i> pv. <i>oryzae</i> by Direct Binding to the Promoters of <i>OsRap2.6</i>, <i>OsWRKY62</i>, and <i>OsPAL1</i>.	Front Plant Sci	12	802758	2021	PR1B,LOX3,NAC66,BG3,_,PAL1,PAL1,WRKY62,PR10A,LOX11,ERF101,NAC96,WRKY45,WRKY104	OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1, OsPR1a, PR1a,Lox3*, lox3(t), LOX-3, Lox3, OsLOX4, LOX4,ONAC066, ONAC66,PR2, OsPR2, OsBG3,C10728, OsChib3a, Chib3a, OsPR31, PR31, PR8, OsPR8,OsPAL, Pal1*, Pal1, PAL, Pal_1, PalI, PAL2, OsPAL01, PAL01, OSPAL, CP-1, GP-1, OsPAL1, PAL3, OsPAL3,OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6,OsWRKY62, OsWRKY62.1, OsWRKY62.2, XB10, OsWRKY62-1, OsWRKY62-2,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsLOX11, OsRCI-1, RCI-1, OsBphi262, OsLOX12, OsLOX2.2, LOX2.2, LOX2.1, OsLOX2.1, OsLOX14, LOX14,OsERF#101, OsERF101, OsDERF6, DERF6, AP2/EREBP#089, AP2/EREBP89, OsRap2.6, Rap2.6, ERF113, OsERF113, OsERF101/OsRAP2.6,NAC94, ONAC096, ONAC96, NAC4, OsNAC4, OsNAC94,OsWRKY45, OsWRKY45-1, OsWRKY45-2, WRKY45-1, WRKY45-2,OsWRKY104, CRPG32, OsCRPG32
50836	35009056	Kiryushkin A.S., Ilina E.L., Guseva E.D., Pawlowski K., Demchenko K.N.	Hairy CRISPR: Genome Editing in Plants Using Hairy Root Transformation.	Plants (Basel)	11(1)		2021		
50837	35008665	Kim E.J., Hong W.J., Kim Y.J., Jung K.H.	Transcriptome Analysis of Triple Mutant for OsMADS62, OsMADS63, and OsMADS68 Reveals the Downstream Regulatory Mechanism for pollen Germination in Rice (<i>Oryza sativa</i>).	Int J Mol Sci	23(1)		2021	CDPK2,ROPGEF2,CDPK14,CDPK27,SWEET5,PME23,CDPK25,PME26,PME33,SMS2,PME10,CDPK26,CDPK21,PME35,CML32,PME14,CML3,SPX1,PME16,MADS63,ROPGEF8,ROPGEF3,PME27,CML2,MADS68,SEX4,PME32,PME41,CML28,CSLD3,PME12,MADS62	OsCDPK2, OsCPK2, CPK2,Os RopGEF2, OsRopGEF2, RopGEF2, OsSTA159, OsGEF29, GEF29,OsCDPK14, OsCPK14, CPK14,OsCDPK27, OsCPK27, CPK27,OsSWEET5,OsPME23,OsCDPK25, OsCPK25, CPK25,OsPME26,OsPME33,INV3, OSINV3, OsINV3, OsVIN2, VIN2, VINV, OsSMS2,OsPME10,OsCDPK26, OsCPK26, CPK26,OsCDPK21, OsCPK21, CPK21, CPK-21,OsPME35,OsCML32,OsPME14,OsCML3, OsSTA271, OsCML3m, OsCML3s,OsSPX1,OsPME16,OsMADS63,Os RopGEF8, OsRopGEF8, RopGEF8, OsGEF27, GEF27,Os RopGEF3, OsRopGEF3, RopGEF3, OsGEF26, GEF26,OsPME27,OsCML2,OsMADS68,OsPP42, PP42, OsSEX4,OsPME32, OsSTA270,OsPME41,OsCML28,OsCSLD3,OsPME12,OsMADS62
50838	34922142	Sun H., Li J., Li X., Lv Q., Chen L., Wang B., Li L.	RING E3 ubiquitin ligase TaSADR1 negatively regulates drought resistance in transgenic Arabidopsis.	Plant Physiol. Biochem.	170	255-265	2022		
50839	34597396	Yu M., Zhou Z., Liu X., Yin D., Li D., Zhao X., Li X., Li S., Chen R., Lu L., Yang D., Tang D., Zhu L.	The OsSPK1-OsRac1-RAI1 defense signaling pathway is shared by two distantly related NLR proteins in rice blast resistance.	Plant Physiol.	187(4)	2852-2864	2021	R9-LOX1,PID3,PR5,RAI1,SPK1,RAC1,TBP2,WRKY45,PI9	Osr9-LOX1, OsLOX3, LOX3,Pi-d3, Pid3, Pi25, Pid3-I1, qBRM6.2,OsPR5, Pir2, PR-5, PR5-1,OsRAI1, OsbHLH003, bHLH003, bHLH3,OsSPK1, OsGEF5, GEF5,OsRAC1, OsRac1, Os Rac1, Rac1, Os-Rac1,TBPOs-2, OsTBP2, OsRpt2a, Rpt2a, OsRPT2a,OsWRKY45, OsWRKY45-1, OsWRKY45-2, WRKY45-1, WRKY45-2,Pi9(t), Pi9(t)*, Pi9, Pi-9(t)
50840	35009085	Yoon J., Jeong H.J., Baek G., Yang J., Peng X., Tun W., Kim S.T., An G., Cho L.H.	A VIN3-like Protein OsVIL1 Is Involved in grain yield and Biomass in Rice.	Plants (Basel)	11(1)		2021	GN1A,VIL1	Gn1a, OsCKX2, CKX2, ckx2, Gn1a/OsCKX2, Os CKX2, CKX2/Gn1a,OsVIL1, OsVIL2
50841	34961560	Wu L., Zhang M., Zhang R., Yu H., Wang H., Li J., Wang Y., Hu Z., Wang Y., Luo Z., Li L., Wang L., Peng L., Xia T.	Down-regulation of OsMYB103L distinctively alters beta-1,4-glucan polymerization and cellulose microfibers assembly for enhanced biomass enzymatic saccharification in rice.	Biotechnol Biofuels	14(1)	245	2021	CEF1,BC1,_,_,_,SIP13 ,TUB4,CESA7,DRP1C,BC7,_,CSLA11	OsMYB103, OsMYB103L, CEF1/OsMYB103L, MYB103, MYB103L, OsMYB93, MYB93, OsFC9, FC9, Os2R_MYB74, 2R_MYB74,bc1, bc-1, OsBC1, CWA1, FP1, OsPCS3, PCS3,,,,OsRFPHC-10, RFPHC-10, OsSIP13 ,  OsRING413, RING413,OsTUB4, TUBB4, OSTB-16, R1623, RTUB-1, Ostub16,OsCesA7, OsCESA7, OS_CESA07, OsCesA 7, CesA7,OsDRP1C,OsCesA4, OsCESA4, CESA4, OS_CESA04, BC11, bc7t, Bc7(t), bc-7, OsCesA 4, CesA4, FC17/CESA4, FC17, OsFC17,,OsCslA11, OsCSLA11 
50842	34968734	Yang Z., Hui S., Lv Y., Zhang M., Chen D., Tian J., Zhang H., Liu H., Cao J., Xie W., Wu C., Wang S., Yuan M.	miR395-regulated sulfate metabolism exploits pathogen sensitivity to sulfate to boost immunity in rice.	Mol Plant	15(4)	671-688	2022		
50843	34921170	Reshetnyak G., Jacobs J.M., Auguy F., Sciallano C., Claude L., Medina C., Perez-Quintero AL., Comte A., Thomas E., Bogdanove A., Koebnik R., Szurek B., Dievart A., Brugidou C., Lacombe S., Cunnac S.	An atypical class of non-coding small RNAs is produced in rice leaves upon bacterial infection.	Sci Rep	11(1)	24141	2021	XISRNA006,XISRNA013,XISRNA001,XISRNA002,XISRNA003,XISRNA004,XISRNA020,XISRNA022,XISRNA017,XISRNA026,XISRNA064,XISRNA011,XISRNA007,XISRNA032,XISRNA042,XISRNA044,WAF1,XISRNA063,DCL1,XISRNA023	xisRNA006, OsxisRNA006,xisRNA013, OsxisRNA013,xisRNA001, OsxisRNA001,xisRNA002, OsxisRNA002,xisRNA003, OsxisRNA003,xisRNA004, OsxisRNA004,xisRNA020, OsxisRNA020,xisRNA022, OsxisRNA022,xisRNA017, OsxisRNA017,xisRNA026, OsxisRNA026,xisRNA064, OsxisRNA064,xisRNA011, OsxisRNA011,xisRNA007, OsxisRNA007,xisRNA032, OsxisRNA032,xisRNA042, OsxisRNA042,xisRNA044, OsxisRNA044,OsWAF1, waf1, waf1-1, waf1-2, HEN1, OsHEN1,xisRNA063, OsxisRNA063,Dcl1, OsDCL1, osDCL1, Os-DCL1, OsDCL1a, DCL1a,xisRNA023, OsxisRNA023
50844	34812496	Wu T., Zhang H., Yuan B., Liu H., Kong L., Chu Z., Ding X.	Tal2b targets and activates the expression of OsF3H03g to hijack OsUGT74H4 and synergistically interfere with rice immunity.	New Phytol.	233(4)	1864-1880	2022		
50845	34931596	Ray S., Basnet A., Bhattacharya S., Banerjee A., Biswas K.	A comprehensive analysis of <i>NAC</i> gene family in <i>Oryza sativa japonica:</i> a structural and functional genomics approach.	J. Biomol. Struct. Dyn.		1-15	2021		
50846	34264339	Zhong R., Phillips D.R., Ye Z.H.	A Single Xyloglucan Xylosyltransferase Is Sufficient for Generation of the XXXG Xylosylation Pattern of Xyloglucan.	Plant Cell Physiol.	62(10)	1589-1602	2021		
50847	34618079	Liu D., Yu Z., Zhang G., Yin W., Li L., Niu M., Meng W., Zhang X., Dong N., Liu J., Yang Y., Wang S., Chu C., Tong H.	Diversification of plant agronomic traits by genome editing of brassinosteroid signaling family genes in rice.	Plant Physiol.	187(4)	2563-2576	2021		
50848	34767648	Yu B., Wu Q., Li X., Zeng R., Min Q., Huang J.	GLUTAMATE RECEPTOR-like gene OsGLR3.4 is required for plant growth and systemic wound signaling in rice (Oryza sativa).	New Phytol.	233(3)	1238-1256	2022		
50849	34927551	Huo C., Zhang B., Wang R.	Research progress on plant noncoding RNAs in response to low-temperature stress.	Plant Signal Behav	17(1)	2004035	2022	MYB3R2,MIR394,D3,miR1874,PCF6,MIR530,MYB30,LCRN1,MIR167G,AGO2,2R_MYB36 ,MIR810B,TCP21,MIR528,DREB1C,MIR319B,MIR2275D,MIR167J,MIR167H,MIR1877,LEA3-1,MIR167F,DREB1A,MIR319A,DREB2A,RAB16A,MIR1866,MIR167E,MIR167D,MIR167I	OsMYB3R-2, OsMYB3R2, OsMSL07, MSL07, MSL7, DLN28, OsDLN28,OsmiR394, miR394, osa-MIR394,d3, dwf3, D3/OsMAX2, Os_F0760, SOL1, OsORE9, ORE9, MAX2, OsRFPH2-10, RFPH2-10, OsD3,  OsFBL27, FBL27,OsmiR1874, osa-MIR1874osa-miR1874 osa-miR1874-3p,OsPCF6,miR530, Osa-miR530, OsmiR530, osa-MIR530, osa-miR530 osa-miR530-3p, osa-miR530-5p,OsMYB30, OsMYB5P, MYB5P, OsMYB13a, MYB13a, Os2R_MYB26, 2R_MYB26, OsMYB30C, MYB30C,OsSPL3, SPL3, OsLCRN1,miR167g, osa-miR167g, osa-miRNA167g ,OsAGO2,OsMYB2, MYB2, Os2R_MYB36 ,miR810b, osa-miR810b, osa-MIR810b, Osa-miR810b.2, miR810-3p, osa-miR810b.1, osa-miR810b.2,OsTCP21,miR528, Osa-miR528, OsmiR528, OsMIR528, osa-MIR528, miR528*, osa-miR528, osa-miR528-5p, MIR528-T1, MIR528-T2,OsDREB1C, CBF1, ERF26, OsERF026, OsERF#026, OsERF26, AP2/EREBP#098, AP2/EREBP98, OsCBF2, CBF2,OsmiR319b, Osa-miR319b,miR2275d, osa-miR2275d, osa-MIR2275d,miR167j, osa-miR167j, osa-MIR167j,miR167h, osa-miR167h, osa-MIR167hosa-miR167h-3p osa-miR167h-5p,miR1877, osa-miR1877, osa-MIR1877,OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3, OsLEA3A, LEA3A,miR167f, osa-miR167f, osa-miRNA167f ,OsDREB1A, Os DREB1A, CBF3, OsCBF3, OsDREB1A/OsCBF3, ERF24, OsERF24, OsERF024, OsERF#024, AP2/EREBP#114, AP2/EREBP114, OsDREBL,OsmiR319a, Osa-miR319a, osa-MIR319aosa-miR319a osa-miR319a-3p osa-miR319a-3p.2-3p,OsDREB2A, OsDREB2a, ERF40, OsERF#040, OsERF040, OsERF40, AP2/EREBP#167, AP2/EREBP167,Rab16A, rab21, RAB21, OsRab21, OsRAB21, OsRAB-21, OsRab16A, OsLEA29, rab16A, OsRAB16A,miR1866, osa-miR1866, osa-MIR1866, Osa-miR1866-5p, Osa-miR1866-3p,miR167e, osa-miR167e, osa-miRNA167e osa-miR167e-3p osa-miR167e-5p,miR167d, osa-miRNA167d, osa-miR167d, osa-miR167d-3p, osa-miR167d-5p,miR167i, osa-miR167iosa-miR167i-3p osa-miR167i-5p
50850	34857750	Zhang J., Tang M., Chen Y., Ke D., Zhou J., Xu X., Yang W., He J., Dong H., Wei Y., Naismith J.H., Lin Y., Zhu X., Cheng W.	Catalytic flexibility of rice glycosyltransferase OsUGT91C1 for the production of palatable steviol glycosides.	Nat Commun	12(1)	7030	2021	UGT91C1	OsUGT91C1, EUGT11, OsEUGT11
50851	34948428	Wu T., Zhang H., Bi Y., Yu Y., Liu H., Yang H., Yuan B., Ding X., Chu Z.	Tal2c Activates the Expression of <i>OsF3H04g</i> to Promote Infection as a Redundant TALE of Tal2b in <i>Xanthomonas oryzae</i> pv. <i>oryzicola</i>.	Int J Mol Sci	22(24)		2021	2ODD3,TPS19,2ODD2,BHLH6,CPS4,HSP18.0	2-ODD3, Os2-ODD3, Os2ODD3, OsF3H04g, F3H04g, OsSAH2, SAH2, OsF3H2, F3H2, OsF3H04g/OsSAH2, OsS5H3, S5H3,OsTPS19, TPS15, OsTPS15,FLS, 2-ODD2, Os2-ODD2, Os2ODD2, OsF3H, F3H, F3H2, OsF3H2, OsF3H03g, F3H03g, OsSAH1, SAH1, OsF3H1, F3H1,OsbHLH006, bHLH006, OsbHLH6, bHLH6, RERJ1, OsRERJ1, bHLH35,OsCPS4, CYC1, OsCYC1, OsCyc1, cpsl3, OsCPSL3, OsCPSsyn, OsCyc1/OsCPS4, OsTPS15, Os-CPS4, TPS11, OsTPS11,OsHSP18.0-CI, HSP18.0-CI, OsHsp18.0, OsHSP18.0, Oshsp18.0, OsSHSP1, SHSP1, OsMSR3, MSR3, OsHSP20, HSP20, OsHSP18.6, HSP18.6
50852	34948047	Chang S., Ren Z., Liu C., Du P., Li J., Liu Z., Zhang F., Hou H., Shi J., Liang W., Yang L., Ren H., Zhang D.	<i>OsFH3</i> Encodes a Type II Formin Required for Rice Morphogenesis.	Int J Mol Sci	22(24)		2021	FH3,BUI1	OsFH3,BUI1, FH5, FH5/BUI1, RMD, OsRMD, OsFH5, FH5/RMD 
50853	34908164	Li H., Xu X., Han K., Wang Z., Ma W., Lin Y., Hua H.	Isolation and functional analysis of OsAOS1?promoter for resistance to Nilaparvata lugens St?l infestation in rice.	J. Cell. Physiol.	237(3)	1833-1844	2022		
50854	34995737	Tomita M., Obara Y.	Year-round flowering gene E1, a mutation at the E1 locus on rice chromosome 7 and its combination with green revolution gene sd1 in an isogenic cell line.	Gene	815	146166	2022		
50855	34983834	Kawai T., Shibata K., Akahoshi R., Nishiuchi S., Takahashi H., Nakazono M., Kojima T., Nosaka-Takahashi M., Sato Y., Toyoda A., Lucob-Agustin N., Kano-Nakata M., Suralta R.R., Niones J.M., Chen Y., Siddique K.H.M., Yamauchi A., Inukai Y.	<i>WUSCHEL-related homeobox</i> family genes in rice control lateral root primordium size.	Proc. Natl. Acad. Sci. U.S.A.	119(1)		2022	IAA9,LBD37,DH1,WOX11,LBD40,WOX10,QHB,WOX6,IAA20	OsIAA9, OsIAA2,OsLBD37, OsLBD3-8, LBD3-8,OsDH1, OsLBD2-1, LBD2-1, OsLOB16, LOB16,OsWOX11, Os WOX11, OsWOX12A,OsLBD40,OsWOX10, Os WOX10, OsWOX11/12, OsWOX11,OsQHB, OsWOX9, WOX9, WOX5, Os WOX5, OsWOX5, QHB/OsWOX9,OsWOX6, Os WOX6, OsWOX12B, WOX12B,OsIAA20
50856	35009142	Wang X., Wu R., Shen T., Li Z., Li C., Wu B., Jiang H., Zhao G.	An R2R3-MYB transcription factor OsMYBAS1 Promotes Seed Germination under Different Sowing Depths in Transgenic Rice.	Plants (Basel)	11(1)		2022	MYBAS1	OsMYBAS1, Os2R_MYB92, 2R_MYB92
50857	34991480	Liang J., Zhang Q., Liu Y., Zhang J., Wang W., Zhang Z.	Chlorosis seedling lethality 1 encoding a MAP3K protein is essential for chloroplast development in rice.	BMC Plant Biol.	22(1)	20	2022	CSL1,MKK1,SMG1	OsCSL1, MKKK22, OsMKKK22,OsMKK1, OsMEK2, MEK2, OsMAPKK1, MAPKK1, OsMAP2K2, MAP2K2,OsMKK4, MKK4, OsMKK4/SMG1, OsMAPKK4, MAPKK4, OsMEK4, MEK4, OsSMG1, SMG1/OsMEK6, OsMEK6, MEK6, OsSTS, STS
50858	35104663	Li Z., Zhou T., Sun P., Chen X., Gong L., Sun P., Ge S., Liang Y.K.	COBL9 and COBL7 synergistically regulate root hair tip growth via controlling apical cellulose deposition.	Biochem. Biophys. Res. Commun.	596	6-13	2022		
50859	35018498	Lei T., Zhang L., Feng P., Liu Y., Yin W., Shang L., He G., Wang N.	OsMYB103 is essential for tapetum degradation in rice.	Theor. Appl. Genet.	135(3)	929-945	2022		
50860	35163275	Liang B., Wang H., Yang C., Wang L., Qi L., Guo Z., Chen X.	Salicylic Acid Is Required for Broad-Spectrum disease resistance in Rice.	Int J Mol Sci	23(3)		2022	TPS19,WRKY76,2ODD3,F3H2,S3H,2ODD2,WRKY45	OsTPS19, TPS15, OsTPS15,OsWRKY76, OsWRKY76.1, OsWRKY76.2, OsWRKY76.3,2-ODD3, Os2-ODD3, Os2ODD3, OsF3H04g, F3H04g, OsSAH2, SAH2, OsF3H2, F3H2, OsF3H04g/OsSAH2, OsS5H3, S5H3,OsF3H-2, F3H-2, OsF3H2, FNS1, OsFNS1, OsSAH4, SAH4, OsF3H8, F3H8,OsS3H, 2-ODD1, Os2-ODD1, 2ODD1, Os2ODD1, OsSAH3, SAH3, OsS3H/OsSAH3, OsS5H1, S5H1,FLS, 2-ODD2, Os2-ODD2, Os2ODD2, OsF3H, F3H, F3H2, OsF3H2, OsF3H03g, F3H03g, OsSAH1, SAH1, OsF3H1, F3H1,OsWRKY45, OsWRKY45-1, OsWRKY45-2, WRKY45-1, WRKY45-2
50861	35098050	Marques J., Matiolli C.C., Abreu I.A.	Visualization of a curated <i>Oryza sativa</i> L. CDPKs Protein-Protein Interaction Network <i>(</i>CDPK-OsPPIN<i>)</i>.	MicroPubl Biol	2022		2022	CDPK28,CDPK1,CDPK26,SPK,CDPK6,CDPK21,CDPK17,CDPK18,CDPK4,CDPK2,CDPK24,CDPK10,CDPK25	OsCDPK28, OsCPK28, CPK28,OsCDPK1, OsCPK1, CPK1,OsCDPK26, OsCPK26, CPK26,CDPK 1, CDPK1, CDPK23, OsCDPK23, OsCPK23, CPK23, OsSPK,OsCDPK6, OsCPK6, CPK6,OsCDPK21, OsCPK21, CPK21, CPK-21,OsCDPK17, OsCPK17, CPK17, OsCPK17.1, OsCPK17.2, OsCPK17.3, OsCPK17.4, OsCPK17.5,OsCDPK18, OsCPK18, CDPK5, OsCDPK5, CPK18,OsCDPK4, OsCPK4, CPK4, CDPK1,OsCDPK2, OsCPK2, CPK2,OsCDPK24, OsCPK24, OsCDPK14, CPK24,OsCDPK10, OsCPK10, CPK10,OsCDPK25, OsCPK25, CPK25
50862	35356108	Hu D., Li M., Zhao F.J., Huang X.Y.	The Vacuolar Molybdate Transporter OsMOT1;2 Controls Molybdenum Remobilization in Rice.	Front Plant Sci	13	863816	2022	SULTR5;1	OsSultr5;1, OsSul5;1, OsMOT1;2, MOT1;2
50863	35015164	Jing X.Q., Li W.Q., Zhou M.R., Shi P.T., Zhang R., Shalmani A., Muhammad I., Wang G.F., Liu W.T., Chen K.M.	Correction to: Rice Carbohydrate?Binding Malectin?Like Protein, OsCBM1, Contributes to Drought?Stress Tolerance by Participating in NADPH Oxidase?Mediated ROS Production.	Rice (N Y)	15(1)	3	2022	RPK3	OsRPK3, OsMRLK63, MRLK63, OsCBM1, CBM1, OsMRLP15, MRLP15
50864	35032672	Jeong Y.S., Choi H., Kim J.K., Baek S.A., You M.K., Lee D., Lim S.H., Ha S.H.	Overexpression of OsMYBR22/OsRVE1 transcription factor simultaneously enhances chloroplast-dependent metabolites in rice grains.	Metab. Eng.	70	89-101	2022		
50865	35126424	Xiao X., Wang R., Khaskhali S., Gao Z., Guo W., Wang H., Niu X., He C., Yu X., Chen Y.	A Novel Glycerol Kinase Gene <i>OsNHO1</i> Regulates Resistance to Bacterial Blight and Blast Diseases in Rice.	Front Plant Sci	12	800625	2021	AOS1,NHO1,HMS1,SRC2,ERF3,KCS1,WRKY6,_,ERF104	OsAOS, OsAOS1, CYP74A1, OsAOS2, AOS2,OsNHO1,CER6/CUT1, CER6, CUT1, OsCER6, WSL4, KCS6, OsKCS6, CER6/CUT1/KCS6, OsHMS1, OsKCS8, KCS8,OsSRC2, OsC2DP10, C2DP10,Os02ERF, OsSHN1, OsWR1, WR1, OsERF#003, OsERF003, OsERF3, AP2/EREBP#012, AP2/EREBP12,OsKCS1, OsKCS13, KCS13,OsWRKY6, WRKY-6, DLN103, OsDLN103,TLP, PR5, OsTLP, OsPR5,DERF3, OsDERF3, OsERF#104, OsERF104, AP2/EREBP#152, AP2/EREBP152, RAP2, OsRAP2
50866	34436579	Cui L.H., Min H.J., Yu S.G., Byun M.Y., Oh T.R., Lee A., Yang H.W., Kim W.T.	OsATL38 mediates mono-ubiquitination of the 14-3-3 protein OsGF14d and negatively regulates the cold stress response in rice.	J. Exp. Bot.	73(1)	307-323	2022		
50867	35350298	Kubo T., Yoshimura A., Kurata N.	Loss of OsEAF6, a Subunit of the Histone Acetyltransferase Complex, Causes Hybrid Breakdown in Intersubspecific Rice Crosses.	Front Plant Sci	13	866404	2022	HWE1,HWE2	hwe1(t)*, hwe1, OsHWE1, OsEAF6/HWE1, OsEAF6, EAF6, HWS2, OsHWS2,OsHWE2, OsEAF6/HWE2, OsEAF6, EAF6, HWS1, OsHWS1
50868	35143519	Santos M.L., de Resende MLV., Dos Santos Ciscon BA., Freitas N.C., Pereira M.H.B., Reichel T., Mathioni S.M.	LysM receptors in Coffea arabica: Identification, characterization, and gene expression in response to Hemileia vastatrix.	PLoS ONE	17(2)	e0258838	2022		
50869	35015901	Wang Z., Zhou L., Lan Y., Li X., Wang J., Dong J., Guo W., Jing D., Liu Q., Zhang S., Liu Z., Shi W., Yang W., Yang T., Sun F., Du L., Fu H., Ma Y., Shao Y., Chen L., Li J., Li S., Fan Y., Wang Y., Leung H., Liu B., Zhou Y., Zhao J., Zhou T.	An aspartic protease 47 causes quantitative recessive resistance to rice black-streaked dwarf virus disease and southern rice black-streaked dwarf virus disease.	New Phytol.	233(6)	2520-2533	2022	AP47	OsAP47
50870	35095969	Kim S., Park S.I., Kwon H., Cho M.H., Kim B.G., Chung J.H., Nam M.H., Song J.S., Kim K.H., Yoon I.S.	The Rice Abscisic Acid-Responsive RING Finger E3 ligase OsRF1 Targets OsPP2C09 for Degradation and Confers Drought and Salinity Tolerance in Rice.	Front Plant Sci	12	797940	2021	RF1,PP2C53,PP2C9,PP2C50,SLR1,PP2C30,NCED3,ABA3,ABA1	OsRF1,  OsRING279, RING279,OsPP2C53, OsPP81, OsABIL2, ABIL2,OsPP15, PP15, OsPP2C09, PP2C09, OsPP2C9, OsPP2C3,OsPP2C50, OsPP78, OsABIL3, ABIL3,slr1-1, slr1, slr, GAI, OsGAI, OsSLR1, Os SLR1, OsRGA1, OsGRAS-18, OsGRAS-18, GRAS-18, GRAS18, SLR-1,OsPP2C30, OsPP48, PP48,OSNCED3, OsNCED-3, OsNCED3, OsNCED3a, NCED3a, OsNCED4, NCED4, OsNECD2, OsNCED2b, NCED2b ,OsABA3, OsMoCo, MoCo,OsABA1, Zep1, OsAba1, Aba2, OsAba2, OsZep1, Zep, OsZep, Aba1, OsABA2, Osaba1, OsZEP-1, OsZEP, OSZEP1, ZEP1, ZEP
50871	35093592	Li Z., Wei X., Tong X., Zhao J., Liu X., Wang H., Tang L., Shu Y., Li G., Wang Y., Ying J., Jiao G., Hu H., Hu P., Zhang J.	The OsNAC23-Tre6P-SnRK1a feed-forward loop regulates sugar homeostasis and grain yield in rice.	Mol Plant	15(4)	706-722	2022	_,TPS11,TPS8,TPS7,TPS3,TPP7,OSK1,TPS10,TPS2,TPP9,TPS1,_,TPP6,TPS9,TPS5,TPS6,TPP1,TPP4,TMS5,TPS4	OsTPP6, TPP6,OsTPS11,OsTPS8, OsTPS1, TPS1,OsTPS7,OsTPS3,OsTPP7,osk1, SnRK1A, OsSnRK1A, OsSNRK1a, SnRK1A/OSK1, SnRK1a, OsSnRK1.2, SnRK1.2, OsSnRK1alphaA, SnRK1alphaA,OsTPS10,OsTPS2,OsTPP9, OsTPP3, TPP3,OsTPS1,OsTPP4, TPP4,OsTPP6, OsTPP5, TPP5,OsTPS9,OsTPS5,OsTPS6,OsTPP1, OsTPS, TPP,OsTPP4, OsTPP7, TPP7, OsTPP2, TPP2,tms5, NAC18, ONAC023, ONAC23, NAC23, TMS5/ONAC023, OsEnS-30,OsTPS4
50872	35054937	Gao Y., Xiang X., Zhang Y., Cao Y., Wang B., Zhang Y., Wang C., Jiang M., Duan W., Chen D., Zhan X., Cheng S., Liu Q., Cao L.	Disruption of <i>OsPHD1</i>, Encoding a UDP-glucose epimerase, Causes JA Accumulation and Enhanced Bacterial Blight Resistance in Rice.	Int J Mol Sci	23(2)		2022	NYC1,TIFY9,CEBIP,TIFY11A,BHLH9,PR10A,TIFY10C,SGR,TIFY11E,NYC3,BHLH6,NOL,WRKY45,TIFY10A,COI1B,PAL1,TIFY11B,COI1,RLCK185,RLCK276,PHD1,COI2,SH11,RLCK304,MGD2,BHLH148,TIFY11D,TIFY11C	nyc1, OsNYC1,OsJAZ11, OsJAZ5, OsTIFY9, JAZ11, JAZ5, JAZ11/TIFY9 ,CEBiP, Os-LYP1, LYP1, OsCEBiP,OsJAZ3, JAZ3, OsJAZ 9, OsJAZ9, Os-JAZ9, JAZ9, OsTIFY11a, OsJAZ6, JAZ6,OsbHLH009, bHLH009, OsMYC2, MYC2,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsJAZ7, JAZ7, OsJAZ 8, OsJAZ8, Os-JAZ8, JAZ8, OsTIFY10c, OsTIFY10c/OsJAZ8,sgr(t), sgr, OsSGR, OsSgr, SGR1, OsSGR1,OsJAZ 13, OsJAZ13,JAZ13, OsTIFY11e, OsJAZ13a, OsJAZ13b, OsJAZ13c, OsJAZ13d,nyc3, OsNYC3, PPH,OsbHLH006, bHLH006, OsbHLH6, bHLH6, RERJ1, OsRERJ1, bHLH35,nol, NOL1, OsNOL, OsNOL1,OsWRKY45, OsWRKY45-1, OsWRKY45-2, WRKY45-1, WRKY45-2,OsJAZ5, JAZ5, JAZ6, OsJAZ6, OsTIFY10A,OsCOI1b, COI1b, OsCOI1H, COI1H, OsFbox260, Fbox260, Os_F0646,  OsFBL23, FBL23, OsCOl-1, COl-1,OsPAL, Pal1*, Pal1, PAL, Pal_1, PalI, PAL2, OsPAL01, PAL01, OSPAL, CP-1, GP-1, OsPAL1, PAL3, OsPAL3,OsJAZ4, JAZ4, OsJAZ 10, OsJAZ10, JAZ10, OsTIFY11b,OsCOI1a, OsCOI1, Os_F0728, COI1a, F0728,  OsFBL4, FBL4,OsRLCK185,OsLysM-RLK10, LysM-RLK10, OsRLCK276, OsCERK2/OsRLK10, OsCERK2, OsRLK10, CERK2, RLK10,OsPHD1,  LM212-1,OsCOI2,OsJAmyb, JAmyb, OsJAMyb, OsMYB21, MYB21, Os2R_MYB91, 2R_MYB91, OgSH11, OsSH11,OsRLCK304, OsBSK1-2, BSK1-2, OsBSK1,OsMGD, MGD, OsMGD2, OsMGDG3, MGDG3,OsbHLH148, bHLH148,OsTIFY11d, OsJAZ1, JAZ1, OsJAZ 12, OsJAZ12, JAZ12,OsJAZ2, JAZ2, OsJAZ 11, OsJAZ11, Os-JAZ11, JAZ11, OsTIFY11c, OsJAZ1, JAZ1
50873	35116051	Sun J., Song W., Chang Y., Wang Y., Lu T., Zhang Z.	OsLMP1, Encoding a Deubiquitinase, Regulates the Immune Response in Rice.	Front Plant Sci	12	814465	2021	LMP1,_,_	UBP1-9, OsUBP1-9, OsUBP1, UBP1, OsLMP1, RSR1, OsRSR1, OsUBP2, UBP2,OsPAL07, OsPAL, PAL07, OsPAL6, PAL6, PAL1, OsPAL7, PAL7,OsPAL04, PAL04, PAL, OsPAL7, PAL7
50874	35360342	Cavallaro V., Maghrebi M., Caschetto M., Sacchi G.A., Nocito F.F.	Sulfur Stable Isotope Discrimination in Rice: A Sulfur Isotope Mass Balance Study.	Front Plant Sci	13	837517	2022	SULTR1;1	OsSultr1;1, OsSul1;1, Sul1;1, OsSultr1;1(a), OsSultr1;1(b)
50875	35026163	Cheng P., Bao S., Li C., Tong J., Shen L., Yu H.	RNA N6-methyladenosine modification promotes auxin biosynthesis required for male meiosis in rice.	Dev. Cell	57(2)	246-259.e4	2022		
50876	35349595	Freeg H.A., Attia K.A., Casson S., Fiaz S., Ramadan E.A., Banna A.E., Zoulias N., Aboshosha A., Alamery S.	Physio-biochemical responses and expressional profiling analysis of drought tolerant genes in new promising rice genotype.	PLoS ONE	17(3)	e0266087	2022	HSP101,CDPK4,DREB1C,SKIPA,ERF42,ERF41,WRKY13,DREB2A,C,LEA3-1,APX1,ERF62,AHL1,CDPK7,RAB16A,DREB1A,BZIP23,CATA,ASNASE2,MOC2,P5CS,ONAC2	Oshsp101, OsHSP101, ClpB-cyt, OsClpB-cyt, ClpB-C/Hsp100, OsClpB-C,OsCDPK4, OsCPK4, CPK4, CDPK1,OsDREB1C, CBF1, ERF26, OsERF026, OsERF#026, OsERF26, AP2/EREBP#098, AP2/EREBP98, OsCBF2, CBF2,OsSKIPa, OsSKIP, SKIP,OsERF#042, OsERF042, OsERF42, AP2/EREBP#048, AP2/EREBP48, OsDREB2B, DREB2B, OsDREB2B2, OsDREB2A, DREB2A,OsERF#041, OsERF041, OsERF41, AP2/EREBP#025, AP2/EREBP25, OsDREB2E,OsWRKY13,OsDREB2A, OsDREB2a, ERF40, OsERF#040, OsERF040, OsERF40, AP2/EREBP#167, AP2/EREBP167,C, Cp, OsC1, Os-C1, C1, OsMyb6, Myb6, OsPL6, PL6, OsGL1E, GL1E, Os2R_MYB63, 2R_MYB63, OsC1PLSr, C1PLSr,OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3, OsLEA3A, LEA3A,OsAPX1, APXa, OsAPXa, OsAPx01, OsAPx1, OSAPX1, APx1, cAPX, APX2, cAPXa, OscAPXa,OsERF#062, OsERF062, OsERF62, AP2/EREBP#125, AP2/EREBP125, AP2-125, OsLG3, LG3, OsLG3/OsAP2-125, OsAP2-125, WAP1, OsWAP1, OsSTAP1, STAP1, ERF1, OsERF1,OsAHL1, OsAHL14, AHL14,OsCDPK7, OsCPK7, CDPK1, OsCDPK11, CDPK12, OsCDPK13,Rab16A, rab21, RAB21, OsRab21, OsRAB21, OsRAB-21, OsRab16A, OsLEA29, rab16A, OsRAB16A,OsDREB1A, Os DREB1A, CBF3, OsCBF3, OsDREB1A/OsCBF3, ERF24, OsERF24, OsERF024, OsERF#024, AP2/EREBP#114, AP2/EREBP114, OsDREBL,OsbZIP23, OsAREB1, OsABF2, Osbzip23, OsAREB2, OsZIP23, ZIP23,CATA1, Cat A1*, OSCAT-A, Cat2, CatA1, CAT-A, OsCatA, OsCAT, CAT, catA, OSCATA, OsCATc, OsCATA, OsCAT1A, CAT1, OsCAT1, OsCATC, OsCAT2,OsASNase2, ASNase2,FR, OsFR, FBP1, OsFBP1, OsMOC2, OscFBP1, cFBP1, MOC2/FBP1,OsP5CS, P5CS1, OsP5CS1, OsALDH18B1, ALDH18B1, OsP5CS-1, P5CS-1,SNAC1, snac1, OsNAC9, ONAC002, ONAC2, ONAC033, ONAC33, ONAC043, ONAC43, ONAC044, ONAC44, OsNAC19, NAC19, SNAC1/ONAC002, OsSNAC1, OsNAC9, OsNAC1
50877	35079956	Zhang F., Huang J., Guo H., Yang C., Li Y., Shen S., Zhan C., Qu L., Liu X., Wang S., Chen W., Luo J.	OsRLCK160 contributes to flavonoid accumulation and UV-B tolerance by regulating OsbZIP48 in rice.	Sci China Life Sci			2022		
50878	35031003	Swetha C., Narjala A., Pandit A., Tirumalai V., Shivaprasad P.V.	Degradome comparison between wild and cultivated rice identifies differential targeting by miRNAs.	BMC Genomics	23(1)	53	2022	LOGL3,LRA1,SH11,WAK85,RKD10,AGO18,WD40-24,_,2R_MYB73 	OsLOGL3,OsPIN2, PIN2, OsLRA1, WAR1, OsWAR1,OsJAmyb, JAmyb, OsJAMyb, OsMYB21, MYB21, Os2R_MYB91, 2R_MYB91, OgSH11, OsSH11,OsWAK85, YK10,OsSTA58, STA58, OsRKD10,OsAGO18,OsWD40-24, OsSPA3/4,  OsDWD75, DWD75,Os5NG4, 5NG4,R2R3-MYB, Os2R_MYB73 
50879	35273627	Asensio T., Dian C., Boyer J.B., Rivi?re F., Meinnel T., Giglione C.	A Continuous Assay Set to Screen and Characterize Novel Protein N-Acetyltransferases Unveils Rice General Control Non-repressible 5-Related N-Acetyltransferase2 Activity.	Front Plant Sci	13	832144	2022	SNAT1	OsSNAT1, OsSNAT, SNAT, OsGNAT2, GNAT2
50880	34730827	Wang H., Tong X., Tang L., Wang Y., Zhao J., Li Z., Liu X., Shu Y., Yin M., Adegoke T.V., Liu W., Wang S., Xu H., Ying J., Yuan W., Yao J., Zhang J.	RLB (RICE LATERAL BRANCH) recruits PRC2-mediated H3K27 tri-methylation on OsCKX4 to regulate lateral branching.	Plant Physiol.	188(1)	460-476	2022		
50881	35126437	Jiang L., Zhong H., Jiang X., Zhang J., Huang R., Liao F., Deng Y., Liu Q., Huang Y., Wang H., Tao Y., Zheng J.	Identification and Pleiotropic Effect Analysis of <i>GSE5</i> on Rice Chalkiness and grain shape.	Front Plant Sci	12	814928	2021	GSTL2,ALDH2A,GW5,ALK,_,_,_,PPPCB,_,BPH33,_,SSI,_,BGAL6,RSUS3,SSIVB,BMY6,BMY6,_,WX1,TPS8,FLO4,HSP90,UGE1,_,_,BC6,_,_	OsGSTL2, GSTZ5, OsGSTZ5,OsALDH2a, ALDH2a, Aldh2a, OsSTA73, OsALDH2B5, ALDH2B5  ,qSW5/GW5, GSE5, OsGSE5, OsGW5, qSW5,alk, SSII-3, OsSSIIa, OsSSII-3, SSIIa, SSS2A, OsSSIIaChr6, SS2a,,,,Osppc-b, OsSTA1, ppc-b, STA1, BTPC, OsBTPC,,OsDjC10, DjC10, Bph33(t), Bph33,,OsSSI, SSS 1, SSS1, SS1, OsSS1, SSSI, OsSSSI,,OsBgal6, OsBGal6,RSus3(t), SUS3, SS3, OsScS3, RSs3, RSus3, OsSUS3, RSS3, OsEnS-111, Susy3, OsSusy3,OsSSIVb, SSIV-2, OsSSIV-2, SSIVb, SSIV-2, SSIV2, OsSSIV2,,OsBMY6, BAM3, OsBAM3,,wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx,OsTPS8, OsTPS1, TPS1,FLO4-4, flo4, flo4-2, flo4-3, ppdk, OsPPDK, PPDK1, CPDK1, PPDKB, OsPPDKB, cyOsPPDKB, OsPBDK, PBDK, osppdkb, PPD, cyPPDK, chPPDKB, chOsPPDKB,OsHsp90, rHSP90, OsHSP90, GRP94, OsGRP94,OsUGE1, OsUGE-1, UGE-1,OsHsp90, HSP90,,Bc6*, Bc6, OsCesA9, CESA9, OsCESA9, OS_CESA09, OsCesA 9, CesA9, BC88, SDBC1, OsSDBC1,,
50882	35076864	Im J.H., Choi C., Park S.R., Hwang D.J.	The OsWRKY6 transcriptional cascade functions in basal defense and Xa1-mediated defense of rice against Xanthomonas oryzae pv. oryzae.	Planta	255(2)	47	2022		
50883	35283928	Regon P., Dey S., Rehman M., Pradhan A.K., Chowra U., Tanti B., Talukdar A.D., Panda S.K.	Transcriptomic Analysis Revealed Reactive Oxygen Species Scavenging Mechanisms Associated With Ferrous Iron Toxicity in Aromatic Keteki Joha Rice.	Front Plant Sci	13	798580	2022	FER1,NAS1,HRZ1,MIT,DMAS1,IRT2,ZIFL12,IRO2,YSL15,GSNOR1,TOM1,RMC,NRAMP1,VIT1,NAS3,PEZ1	OsFER1, OsFer1 ,OsNAS1,OsHRZ1,  OsRING149, RING149,OsMIT,OsDMAS1, OsAKR5, AKR5,OsIRT2, OsIRT1, OsZIP15, ZIP15,OsZIFL12, OsVMT, VMT, OsVMT/OsZIFL12,OsIRO2, OsbHLH056, bHLH056, bHLH56, OsbHLH56,OsYSL15, OsYs7,OsGSNOR, GSNOR, OsGSNOR1,OsTOM1, ZIFL4, OsZIFL4 ,OsRMC, OsRLK, OsDUF26, DUF26, OsCBMIP, CBMIP, NCS, OsNCS, OsCRK5, CRK5,OsNramp1, OsNRAMP1, OsNramp6,OsVIT2, OsVIT1, VIT2, ,OsNAS3,OsPEZ1, OsMATE14, MATE14
50884	35242159	Liu C., Li N., Lu Z., Sun Q., Pang X., Xiang X., Deng C., Xiong Z., Shu K., Yang F., Hu Z.	CG and CHG Methylation Contribute to the Transcriptional Control of OsPRR37-output Genes in Rice.	Front Plant Sci	13	839457	2022	MADS18,BBS1,DNG701,AGO1A,TA2,SDT,HXK1,HD2,PT11,_,AGO1D,DNG704,AGO18,NAS3,AGO1B	OsMADS18, MADS2, OsMADS2, MADS28, OsMADS28, FDRMADS7, OsMADS18/28,OsRLCK109, RLCK109, OsBBS1, OSBBS1/OsRLCK109, PTK4, PTK4/BBS1, OsPTK4,ROS1C, ROS1c, Os ROS1C, DME2, OsDNG701, ROS1C/DNG701,OsAGO1a, AGO1a, AGO10, AGO1-1 ,ROS1A, ROS1a, DME1, OsROS1A, OsROS1, ROS1, mOsROS1, ROS1A/DNG702, DNG702, OsDNG702,miR156h, OsmiR156h, osmiR156h, osa-miR156h, osa-MIR156hosa-miR156h-3p osa-miR156h-5p,OsHXK1,Hd2(t), Hd2, qHD2(t), OsPRR37, Os-PRR37, PRR37, Prr4, OsPRR4, DTH7, Os DTH7, OsCCT28, CCT28, Ghd7.1, PRR37/Hd2, EH7-2, EH7-2/Hd2, Hd2/PRR37, PRR37-1a, PRR37-1b, PRR37-1c, PRR37-2a, PRR37- 2, HD7.2,OsPT11, PHT1-11, OsPht1;11, ORYsa;PHT1;11,OsZIP9, ZIP9,OsAGO1d, AGO1d,OsROS1D, ROS1D, ROS1d, ROS1D/DNG704, OsDNG704,OsAGO18,OsNAS3,OsAGO1b, AGO1b, AGO1-2 
50885	35075530	Chang S., Huang G., Wang D., Zhu W., Shi J., Yang L., Liang W., Xie Q., Zhang D.	Rice SIAH E3 Ligases Interact with RMD Formin and Affect Plant Morphology.	Rice (N Y)	15(1)	6	2022	RFPHC14,DIS1,SIP14,RFPHC9,SIP33,RIP6,BUI1	OsRFPHC-14, RFPHC-14, OsSTA9, RIP3, OsRIP3,  OsRING79, RING79,OsDIS1, RIP5, OsRIP5,  OsRING80, RING80,OsSIP14, RIP1, OsRIP1,  OsRING77, RING77,OsRFPHC-9, RFPHC-9, RIP4, OsRIP4,  OsRING75, RING75,OsSIP33, RIP2, OsRIP2,  OsRING76, RING76,OsRIP6,  OsRING78, RING78,BUI1, FH5, FH5/BUI1, RMD, OsRMD, OsFH5, FH5/RMD 
50886	35049071	Roy S., Mishra M., Kaur G., Singh S., Rawat N., Singh P., Singla-Pareek SL., Pareek A.	OsCYP2-P, an auxin-responsive cyclophilin, regulates Ca2+ calmodulin interaction for an ion-mediated stress response in rice.	Physiol Plant		e13631	2022		
50887	35142134	Peng G., Lu S., Yang K., Wan W., Huang C.	[Identification of heat stress transcription factors gene family in <i>Setcreasea purpurea</i> and analysis of its expression pattern under Cu2+ stress].	Sheng Wu Gong Cheng Xue Bao	38(1)	238-251	2022		
50888	35040153	Prakash N.R., Lokeshkumar B.M., Rathor S., Warraich A.S., Yadav S., Vinaykumar N.M., Dushynthkumar B.M., Krishnamurthy S.L., Sharma P.C.	Meta-analysis and validation of genomic loci governing seedling and reproductive stage salinity tolerance in rice.	Physiol Plant	174(1)	e13629	2022		
50889	35205268	Tian T., Chen L., Ai Y., He H.	Selection of Candidate Genes Conferring Blast Resistance and heat tolerance in Rice through Integration of Meta-QTLs and RNA-Seq.	Genes (Basel)	13(2)		2022		
50890	34905198	Zhao S., Wu J.	Rapid and Specific Purification of Argonaute-Small RNA Complexes from Rice for Slicer Activity.	Methods Mol. Biol.	2400	139-147	2022		
50891	35003800	Ji C., Li J., Jiang C., Zhang L., Shi L., Xu F., Cai H.	Zinc and nitrogen synergistic act on root-to-shoot translocation and preferential distribution in rice.	Journal of Advanced Research	35	187-198	2022	GLN1;1,NIR2,GS2,GLN1;2	OsGLN1;1, GS1, RGS28, OsGS1;1, GS1;1, OsGS, GS1, OsGS1, GLN1-1, OsGS1-1, GS1-1, GS1.1, OsGS1.1,OsNiR2, NiR2,OsGS2, GLN2, OsGLN2, RGS31, OsRGS31,OsGLN1;2, GSr, RGS8, OsGS1;2, GS1;2, GS1, OsGS1-2, GS1-2, OsGS1.2, GS1.2
50892	34942018	Jin Y., Song X., Chang H., Zhao Y., Cao C., Qiu X., Zhu J., Wang E., Yang Z., Yu N.	The GA-DELLA-OsMS188 module controls male reproductive development in rice.	New Phytol.	233(6)	2629-2642	2022		
50893	35310657	Zhang H., Zheng D., Song F., Jiang M.	Expression Patterns and Functional Analysis of 11 E3 Ubiquitin Ligase Genes in Rice.	Front Plant Sci	13	840360	2022	ATL101,PUB33,ATL32,RNF4,ATL17,WRKY45,NH1,PUB34,PUB31,_,PR1A,CHT3,PUB39,PUB46,ATL69	OsATL101,  OsRING304, RING304,OsPUB33,  OsPUB33, PUB33,OsATL32,  OsRING329, RING329,OsRNF4,OsATL17,  OsRING334, RING334,OsWRKY45, OsWRKY45-1, OsWRKY45-2, WRKY45-1, WRKY45-2,OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2, DLN5, OsDLN5,  OsBTBA1, BTBA1,OsPUB34,  OsPUB34, PUB34,OsPUB31,  OsPUB31, PUB31,Lox2:Os:1, OsLOX9, LOX9, OsLOX8, LOX8, OsLOX2, LOX2, OsRLL, OsHI-LOX, HI-LOX, RLL2 LOX, RLL2, Lox2osPil, OsLOX2;1, LOX2;1, OsLOX1, OsLOX7, LOX7,OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1, OsPR1b, PR1alpha, OsPR1alpha,Cht3*, Cht3, Cht-3, CH6, OsChia1c, CHI7, OsCHI11, CHI11, OsPR3, PR3,OsPUB39,  OsPUB39, PUB39,OsPUB46,OsATL69,  OsRING255, RING255
50894	35068048	Shen W., Zhang X., Liu J., Tao K., Li C., Xiao S., Zhang W., Li J.F.	Plant elicitor peptide signalling confers rice resistance to piercing-sucking insect herbivores and pathogens.	Plant Biotechnol. J.			2022		
50895	35055011	Yan P., Zhu Y., Wang Y., Ma F., Lan D., Niu F., Dong S., Zhang X., Hu J., Liu S., Guo T., Xin X., Zhang S., Yang J., Cao L., Luo X.	A New RING Finger Protein, <i>PLANT ARCHITECTURE</i> and <i>GRAIN NUMBER</i> 1, Affects Plant Architecture and grain yield in Rice.	Int J Mol Sci	23(2)		2022	AHP2,FWL6,PAGN1,RR9,RR10,AHP1	OHP2, HPt, OsAHP2 Hpt3, Ohp2, OsHP1, HP1, OsHpt3, OsHP01,OsFWL6, OsCNR10, CNR10, OsFWL5/OsPCR1, OsFWL5, OsPCR1, FWL5, PCR1 ,OsPAGN1,  OsRING290, RING290,OsRR9, Rra1, OsRRA1, OsRR10, RR10,OsRR10, Rra2, OsRRA2, RR2,OHP1, HPt, OsAHP1, Hpt2, Ohp1, OsHP2, HP2, OsHpt2, OsHPt2, OsHP02
50896	35054806	Hong Y., Wang H., Gao Y., Bi Y., Xiong X., Yan Y., Wang J., Li D., Song F.	ERF Transcription Factor OsBIERF3 Positively Contributes to Immunity against Fungal and Bacterial Diseases but Negatively Regulates cold tolerance in Rice.	Int J Mol Sci	23(2)		2022	CSLA9,MYBS3,MSRMK2,LTI6B,_,MKK3,_,TRXH,ERF91,CDPK7,LTI6A,DSG1,CSLA7,_,CAL1,OLP1,_	OsCslA9, OsCSLA9, OsCesA9, CesA9,OsMYBS3,OsMSRMK2, OsMAPK5, OsMAP1, OsMPK3, OsBIMK1, OsMAPK2, MPK5, BIMK1, MAPK2, MAPK5, MPK3, OsMPK5, OsMAPK3, OsMAPK5b, MAPK3,OsLti6b, Lti6b, OsLTI6B, OsRCI2-6,,OsMKK3, OsMAPKK3, MAPKK3, OsMEK8a, MEK8a, OsMEK3, MEK3,,trxh, Trx-H, OsTRXh1, TRXh1, OsTrxh1, Os1, OsTrx23, Trx23, RPP13-1,OsERF#091, OsERF091, OsERF91, AP59, OsAP59, AP2/EREBP#147, AP2/EREBP147, OsBIERF3, BIERF3,OsCDPK7, OsCPK7, CDPK1, OsCDPK11, CDPK12, OsCDPK13,OsLti6a, Lti6a, OsLTI6A, OsRCI2-10,OsMAPK6, MAPK6, OsMPK6, OsSIPK, SIPK, OsMAPK1, MAPK1, MPK1, OsMPK1, MPK6, OsDSG1,OsCslA7, OsCSLA7, OsCesA7, CesA7,PR5,OsCPT1, CPT1, DEFL7, OsDEFL7, OsDf-07, Df-07, OsPR12, PR12, DEF7, OsDEF7, OsAFP1, AFP1, OsPDF2.2, PDF2.2,PR5, OsOLP1,PR5
50897	35083835	Liu J.Y., He Z.D., Leung D.W.M., Zeng S.S., Cui L.L., Peng X.X.	Molecular, biochemical and enzymatic characterization of photorespiratory 2-Phosphoglycolate phosphatase (PGLP1) in rice.	Plant Biol (Stuttg)	24(3)	510-516	2022	PGLP2,4NPP1,PGLP3	OsPGLP2,Os4NPP1, OsPGLP1, PGLP1,OsSTA280, OsPGLP3
50898	35310624	Adhikari A., Khan M.A., Imran M., Lee K.E., Kang S.M., Shin J.Y., Joo G.J., Khan M., Yun B.W., Lee I.J.	The Combined Inoculation of <i>Curvularia lunata</i> AR11 and Biochar Stimulates Synthetic Silicon and Potassium Phosphate Use Efficiency, and Mitigates Salt and Drought Stresses in Rice.	Front Plant Sci	13	816858	2022	LSI1	lsi1, NIP2-1, OsNIP2;1, NIP2;1, OsLsi1, lsi(t), OsNIP2.1/OsLsi1/OsSIIT1, OsNIP2.1, NIP2.1
50899	35356121	Lu X., Min W., Shi Y., Tian L., Li P., Ma T., Zhang Y., Luo C.	Exogenous Melatonin Alleviates Alkaline Stress by Removing Reactive Oxygen Species and Promoting Antioxidant Defence in Rice Seedlings.	Front Plant Sci	13	849553	2022	ATP6,APX2,SNAT1,TDC2,_,ASMT1,ASMT2,HDY1,SPS1,NOE1,SODB,YGL10,SL,P5CS,RSUS7,MPG1	atp6, OsPOX1, prx3, POX1,OsAPX2, OsAPx02, APXb, OsAPx2, OSAPX2, APx2, cAPX, OsAPX1, APX1,OsSNAT1, OsSNAT, SNAT, OsGNAT2, GNAT2,OsTDC2, OsTDC3,Fd1, OsFd1, ADI1, OsADI1,ZRP4, OMT, ASMT, OsASMT, OsASMT1, ASMT1, OsASMT13, OsCOMT19, COMT19,ZRP4, OsASMT2, OsASMT15,OsFdC2, FdC2, OsHDY1, PetF-2,sps1, OsSPS1, SPS,CATC, OsCat, OsCatC, OsCATC, OsNOE1, noe1, catC, OsCATC, CAT3, OsCAT3, LLM9428, OsLLM9428,SodB, Fe-SOD, Fe- SOD, OsFe-SOD, Fe+-SOD, OsFe+-SOD, OsFe-SODa, OsFe-SODb, OsFeSODb, FeSODb, OsFSD1.2, FSD1.2, FeSOD2, OsFSD2, FSD2, OsFSD1, FSD1, ALM1, OsALM1,CAO, OsCAO, CAO1, OsCAO1, Oslls1, Lls1, DVR, PGL,OsSL, sl (spl1), sl*, sl, spl1, CYP71P1, Os CYP71P1, T5H, OsT5H, CYP71A1, OsCYP71A1, OsLLM1, LLM1, LLM1/OsSL, ELL1, OsELL1, ELL1/SL, OsT5H1,OsP5CS, P5CS1, OsP5CS1, OsALDH18B1, ALDH18B1, OsP5CS-1, P5CS-1,SUS7, SS7, OsScS7, RSs7, RSus7, OsSUS7,OsMPG1, OsVTC1-1, VTC1-1
50900	35359723	Zhu J.N., Yu Y.J., Dai M.D., Zeng Y.L., Lu X.J., Wang L., Liu X.H., Su Z.Z., Lin F.C.	A New Species in <i>Pseudophialophora</i> From Wild Rice and Beneficial Potential.	Front Microbiol	13	845104	2022	PR1A,EL5,PTR9,SAUR2,NAC59,WRKY71,HAK16,MRS2-8,AMT3;2	OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1, OsPR1b, PR1alpha, OsPR1alpha,EL5.1, EL5.2, EL5.3, EL5.4, EL5.5, EL5.6,  OsRING64, RING64,OsPTR9, OsNPF8.20, NPF8.20  ,OsSAUR2,ONAC059, ONAC59,OsWRKY71, WRKY-71,OsHAK16,OsMRS2-8,AMT3;2, OsAMT3;2, OsAMT3.2
50901	35283882	Park J.R., Kim E.G., Jang Y.H., Jan R., Farooq M., Ubaidillah M., Kim K.M.	Applications of CRISPR/Cas9 as New Strategies for Short Breeding to Drought Gene in Rice.	Front Plant Sci	13	850441	2022	CATA,_,LEA3-1,DREB2A,BZIP72,NAC6,NAC5,DHN1	CATA1, Cat A1*, OSCAT-A, Cat2, CatA1, CAT-A, OsCatA, OsCAT, CAT, catA, OSCATA, OsCATc, OsCATA, OsCAT1A, CAT1, OsCAT1, OsCATC, OsCAT2,OsSAP,OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3, OsLEA3A, LEA3A,OsDREB2A, OsDREB2a, ERF40, OsERF#040, OsERF040, OsERF40, AP2/EREBP#167, AP2/EREBP167,OsbZIP72, OsAREB2, OsABF4, ABF4, Osbzip72, OsABI5, ABI5,OsNAC6, ONAC048, NAC48, SNAC2, SNAC2/OsNAC6, OsNAC6/ONAC048, OsSNAC2, SNAC-2, OsSNAC-2, OsNAC2,OsNAC5, NAC71, ONAC071, ONAC009, ONAC9, ONAC020, ONAC20, OnNAC5*, OnNAC5, OsNAC5/ONAC009,LIP9, OsLIP9, lip9, DHN1, DIP1, OsDip1, OsLEA23, OsDhn1, COR410, OsLEA23/DIP1, DIP1/OsLEA23
50902	35161364	Kim J., Silva J., Park C., Kim Y., Park N., Sukweenadhi J., Yu J., Shi J., Zhang D., Kim K.K., Son H.J., Park H.C., Hong C.O., Lee K.M., Kim Y.J.	Overexpression of the <i>Panax</i><i>ginseng</i><i>CYP703</i> Alters Cutin Composition of Reproductive Tissues in Arabidopsis.	Plants (Basel)	11(3)		2022		
50903	35371186	Tong J., Zhao C., Sun M., Fu L., Song J., Liu D., Zhang Y., Zheng J., Pu Z., Liu L., Rasheed A., Li M., Xia X., He Z., Hao Y.	High Resolution Genome Wide Association Studies Reveal Rich Genetic Architectures of Grain Zinc and Iron in Common Wheat (<i>Triticum aestivum</i> L.).	Front Plant Sci	13	840614	2022		
50904	35432393	Jin Q., Zhang L., Hu S., Wei G., Wang Z.	Probing <i>in vivo</i> RNA Structure With Optimized DMS-MaPseq in Rice.	Front Plant Sci	13	869267	2022		
50905	35401642	Cai Z., Zhang Y., Tang W., Chen X., Lin C., Liu Y., Ye Y., Wu W., Duan Y.	LUX ARRHYTHMO Interacts With ELF3a and ELF4a to Coordinate Vegetative Growth and Photoperiodic Flowering in Rice.	Front Plant Sci	13	853042	2022	PRR95,SE1,HD2,GI,EF1,GHD7,ELF4B,ELF4,CCA1,HD3B,RFT1,ELF4A,HD3A,ELF3.2,PCL1	OsPRR95, Os-PRR95, Prr2, OsPRR2, OsCCT33,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, OsHd1,  Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,Hd2(t), Hd2, qHD2(t), OsPRR37, Os-PRR37, PRR37, Prr4, OsPRR4, DTH7, Os DTH7, OsCCT28, CCT28, Ghd7.1, PRR37/Hd2, EH7-2, EH7-2/Hd2, Hd2/PRR37, PRR37-1a, PRR37-1b, PRR37-1c, PRR37-2a, PRR37- 2, HD7.2,OsGI, Gi, Os-GI,Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,Ghd2, Ghd7, OsGhd7, OsCCT26, OsCMF8, OsI, Ghd7/Hd4, Hd4, EH7-1/Hd4, Ghd7-0a, EH7-1, EH7/Ghd7, EH7, OsEH7, GLW7.1, OsGLW7.1,ELF4_chr.3, OsELF4b, ELF4b,ELF4_chr.8, OsELF4c, ELF4c,OsCCA1, OsLHY, LHY, LHY-like_chr.8, COC1, DLN203, OsDLN203, LEM1, OsLEM1, Nhd1, OsNhd1,Hd17, EF7, Ef7, OsELF3-1, ELF3-1, OsELF3, ELF3, ELF3_chr.6, OsELF3.1, ELF3.1, OsELF3a, ELF3a,FT-L 3, OsFTL3, FTL3, FT-L3, RFT, OsRFT1,ELF4_chr.11, OsELF4a, ELF4a,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,ELF3_chr.1, OsELF3.2, ELF3.2, OsELF3-2, ELF3-2, OsELF3b, ELF3b,OsPCL1, OsLUX, LUX, OsLVP2, LVP2
50906	35401708	Ahmad H., Zafar S.A., Naeem M.K., Shokat S., Inam S., Rehman M.A.U., Naveed S.A., Xu J., Li Z., Ali G.M., Khan M.R.	Impact of Pre-Anthesis Drought Stress on Physiology, Yield-Related Traits, and Drought-Responsive Genes in Green Super Rice.	Front Genet	13	832542	2022	_,ABCA1,DT11,DSM1,RR10,CGT1,_,PIOX,LOX7,_,NAC103,SADR1	,OsABCA1,OsDT11,OsDSM1, OsMAPKKK6, MAPKKK6,OsRR10, Rra2, OsRRA2, RR2,OsUGT5, UGT5, OsCGT1,,OsPIOX, RalphaO, alpha-DOX, OsDOX, DOX, alpha-DOX2, Osalpha-DOX2,OsLOX7, LOX6, OsLOX6,,ONAC103, OsNAC103, OsNAC18 , NAC18,OsRFP, OsSADR1, OsSADRI, SADRI,  OsRING105, RING105
50907	35161267	Du X.X., Park J.R., Wang X.H., Jan R., Lee G.S., Kim K.M.	Genotype and Phenotype Interaction between <i>OsWKRYq6</i> and BLB after <i>Xanthomonas oryzae</i> pv. <i>Oryzae</i> Inoculation in the Field.	Plants (Basel)	11(3)		2022	WRKY31	OsWRKY31
50908	35101923		Correction to Supporting Information for Zhang et al., Mutation in <i>CSA</i> creates a new photoperiod-sensitive genic male sterile line applicable for hybrid rice seed production.	Proc. Natl. Acad. Sci. U.S.A.	119(5)		2022		
50909	35171272	Wu B., Yun P., Zhou H., Xia D., Gu Y., Li P., Yao J., Zhou Z., Chen J., Liu R., Cheng S., Zhang H., Zheng Y., Lou G., Chen P., Wan S., Zhou M., Li Y., Gao G., Zhang Q., Li X., Lian X., He Y.	Natural variation in WHITE-CORE RATE 1 regulates redox homeostasis in rice endosperm to affect grain quality.	Plant Cell			2022	WCR1	OsFbox052, OsFbox52, Os_F0755, OsWCR1,  OsFBO2, FBO2
50910	34791424	Groen S.C., Joly-Lopez Z., Platts A.E., Natividad M., Fresquez Z., Mauck W.M., Quintana M.R., Cabral C.L.U., Torres R.O., Satija R., Purugganan M.D., Henry A.	Evolutionary systems biology reveals patterns of rice adaptation to drought-prone agro-ecosystems.	Plant Cell	34(2)	759-783	2022		
50911	35171277	Fu S., Wang K., Ma T., Liang Y., Ma Z., Wu J., Xu Y., Zhou X.	An evolutionarily conserved C4HC3-type E3 Ligase regulates plant broad-spectrum resistance against pathogens.	Plant Cell			2022	MEL	OsMEL,  OsRING460, RING460
50912	35131901	Ercoli M.F., Luu D.D., Rim E.Y., Shigenaga A., Teixeira de Araujo A., Chern M., Jain R., Ruan R., Joe A., Stewart V., Ronald P.	Plant immunity: Rice XA21-mediated resistance to bacterial infection.	Proc. Natl. Acad. Sci. U.S.A.	119(8)		2022		
50913	35231107	Cox K.L.	Adapting to change: Rice surviving drought conditions in the field.	Plant Cell	34(2)	708-709	2022		
50914	35133011	Li G., Zhang L., Wu J., Yue X., Wang M., Sun L., Di D., Kronzucker H.J., Shi W.	OsEIL1 protects rice growth under NH4 + nutrition by regulating OsVTC1-3-dependent N-glycosylation and root NH4 + efflux.	Plant Cell Environ.	45(5)	1537-1553	2022		
50915	35184252	Xu X., Wang H., Liu J., Han S., Lin M., Guo Z., Chen X.	OsWRKY62 and OsWRKY76 Interact with Importin alpha1s for Negative Regulation of Defensive Responses in Rice Nucleus.	Rice (N Y)	15(1)	12	2022	IMPA1A,PR1A,WRKY62,PR1B,WRKY45,_,LOX2,WRKY76	rImpa1a, Impa1a, Osimpa1, Osimpalpha1, OsImpalpha1a, Impalpha1a,OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1, OsPR1b, PR1alpha, OsPR1alpha,OsWRKY62, OsWRKY62.1, OsWRKY62.2, XB10, OsWRKY62-1, OsWRKY62-2,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1, OsPR1a, PR1a,OsWRKY45, OsWRKY45-1, OsWRKY45-2, WRKY45-1, WRKY45-2,IMPA1B, rImpa1b, Impa1b, OsIMalpha1b, IMalpha1b,OsLOX2, OsLOX6, LOX6,OsWRKY76, OsWRKY76.1, OsWRKY76.2, OsWRKY76.3
50916	35090194	Zhao Y., Shi Y., Jiang G., Wu Y., Ma M., Zhang X., Liang X., Zhou J.M.	Rice extra-large G proteins play pivotal roles in controlling disease resistance and yield-related traits.	New Phytol.	234(2)	607-617	2022		
50917	35133010	Guo R., Wu Y.N., Liu C.C., Liu Y.N., Tian L., Cheng J.F., Pan Z., Wang D., Wang B.	OsADK1, a novel kinase regulating arbuscular mycorrhizal symbiosis in rice.	New Phytol.	234(1)	256-268	2022	ADK1	OsADK1
50918	34850204	Zarban R.A., Hameed U.F.S., Jamil M., Ota T., Wang J.Y., Arold S.T., Asami T., Al-Babili S.	Rational design of Striga hermonthica-specific seed germination inhibitors.	Plant Physiol.	188(2)	1369-1384	2022	D14	d14(d10), dwf13, d10, d14, D88, HTD2, OsHTD2, OsD14, qPPB3, D88/D14, HTD4
50919	35217224	Qiu J., Xie J., Chen Y., Shen Z., Shi H., Naqvi N.I., Qian Q., Liang Y., Kou Y.	Warm temperature compromises JA-regulated basal resistance to enhance Magnaporthe oryzae infection in rice.	Mol Plant	15(4)	723-739	2022	OPR5,LOX1,CEBIP,R9-LOX1,LOX8,OPR4,AOS1,NAC4,LOX-L2,AOC,COI1B,BHLH9,COI1,KS4,JIOSPR10,OPR1,DLN31,AOS3	OsOPR5, OsOPR6, OsOPR06-2, OPR4,OsLOX1, OsLOX5,CEBiP, Os-LYP1, LYP1, OsCEBiP,Osr9-LOX1, OsLOX3, LOX3,OsLOX8, OsLOX9, LOX9, OsLOX2;3, LOX2;3, OsLOX2, OsLOX1, CM-LOX8,OsOPR4, OsOPR10, OsOPR06-3, OsOPR7,OsAOS, OsAOS1, CYP74A1, OsAOS2, AOS2,OsNAC4, NAC68, ONAC068, OnNAC4*, OnNAC4, OsNAC4/ONAC068,OsLOX-L2, LOX1.1, LOX L-2, LOX-2, OsLOX2, LOX2,OsAOC, AOC1, OsAOC1, HB, CPM2, OsAOC4, AOC4,OsCOI1b, COI1b, OsCOI1H, COI1H, OsFbox260, Fbox260, Os_F0646,  OsFBL23, FBL23, OsCOl-1, COl-1,OsbHLH009, bHLH009, OsMYC2, MYC2,OsCOI1a, OsCOI1, Os_F0728, COI1a, F0728,  OsFBL4, FBL4,OsKS4, KS4, KSL4, OsKSL4, DTS2, OsDTS2, OsTPS16, TPS16, TPS8, OsTPS8,JIOsPR10, OsPR10, PR10, OsJiPR10, JiPR10, OsPR10c, PR10c,OsOPR1, OsOPR2, OsOPR11, OsOPR06-6, OPDAR1, OsOPR, OPDAR,R2R3-MYB, OsDLN31, MYB3, OsMYB22, MYB22, Os2R_MYB18, 2R_MYB18 ,OsAOS3, HPL2, OsHPL2, OsAOS3/OsHPL2
50920	35161403	Chaya G., Segami S., Fujita M., Morinaka Y., Iwasaki Y., Miura K.	<i>OsGGC2</i>, Ggamma Subunit of Heterotrimeric G Protein, Regulates plant height by Functionally Overlapping with <i>DEP1</i> in Rice.	Plants (Basel)	11(3)		2022	D1,DEP1,GGC2	d1, GPA1, GA1, OsGA1, RGA1, dwf1, XA7, RGA, D1/RGA1, D89, TGW5, OsTGW5, SRG5, OsSRG5,OsDEP1, EP, qPE9-1, DN1, DEP1/DN1/qPE9-1, qNGR9, qDEP1, RGG4/DEP1/DN1/qPE9-1/OsGGC3, RGG4, OsDN1, OsGGC3, GGC3,OsGGC2
50921	34997660	Zhang L.L., Huang Y.Y., Zheng Y.P., Liu X.X., Zhou S.X., Yang X.M., Liu S.L., Li Y., Li J.L., Zhao S.L., Wang H., Ji Y.P., Zhang J.W., Pu M., Zhao Z.X., Fan J., Wang W.M.	Osa-miR535 targets SQUAMOSA promoter binding protein-like 4 to regulate blast disease resistance in rice.	Plant J.	110(1)	166-178	2022	PR1A,miR535,SPL7,GH3-2,KS4,GW8,SPL4,SPL11,NAC4,SPL12,LCRN1	OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1, OsPR1b, PR1alpha, OsPR1alpha,OsmiR535, osa-MIR535osa-miR535 osa-miR535-3p osa-miR535-5p,OsSPL7,OsGH3-2, OsGH3.2, GH3.2,OsKS4, KS4, KSL4, OsKSL4, DTS2, OsDTS2, OsTPS16, TPS16, TPS8, OsTPS8,SPL16, OsSPL16, SLP1, OsSLP1, qGW8, OsGW8,OsSPL4,OsSPL11,OsNAC4, NAC68, ONAC068, OnNAC4*, OnNAC4, OsNAC4/ONAC068,OsSPL12, DLN176, OsDLN176,OsSPL3, SPL3, OsLCRN1
50922	34791444	Wang L., Zheng K., Zeng L., Xu D., Zhu T., Yin Y., Zhan H., Wu Y., Yang D.L.	Reinforcement of CHH methylation through RNA-directed DNA methylation ensures sexual reproduction in rice.	Plant Physiol.	188(2)	1189-1209	2022		
50923	35134228	Smith R.A., Beebe E.T., Bingman C.A., Vander Meulen K., Eugene A., Steiner A.J., Karlen S.D., Ralph J., Fox B.G.	Identification and Characterization of a Set of Monocot BAHD Monolignol Transferases.	Plant Physiol.			2022	PMT,AT5	OsAT4, OsAt4, AT4, OsPMT, OsAT4/PMT, OsAT4/PMT1, OsAT4/OsPMT1, OsPMT1,OsAT5, OsAt5, OsFMT1, FMT1, OsFMT/AT5, OsFMT, FMT
50924	35169940	Gain H., Nandi D., Kumari D., Das A., Dasgupta S.B., Banerjee J.	Genome?wide identification of CAMTA?gene family members in rice (Oryza sativa L.) and in silico study on their versatility in respect to gene expression and promoter structure.	Funct. Integr. Genomics	22(2)	193-214	2022		
50925	35150141	Zhang Z.S., Xia J.Q., Alfatih A., Song Y., Huang Y.J., Sun L.Q., Wan G.Y., Wang S.M., Wang Y.P., Hu B.H., Zhang G.H., Qin P., Li S.G., Yu L.H., Wu J., Xiang C.B.	Rice NIN-LIKE PROTEIN 3 modulates nitrogen use efficiency and grain yield under nitrate-sufficient conditions.	Plant Cell Environ.	45(5)	1520-1536	2022		
50926	35135414	Luo M., Han Z., Huang G., Li R., Liu Y., Lu J., Liu L., Miao R.	Structural comparison of unconventional G protein YchF with heterotrimeric G protein and small G protein.	Plant Signal Behav	17(1)	2024405	2022	D1,YCHF1,RAB2A2	d1, GPA1, GA1, OsGA1, RGA1, dwf1, XA7, RGA, D1/RGA1, D89, TGW5, OsTGW5, SRG5, OsSRG5,OsYchF1, YchF1, OsPM8ATP ,OsRab2A2, Rab2B
50927	35175773	Zhong S., Li X., Li F., Liu T., Pan D., Liu Y., Liu C., Chen G., Gao R.	Source and Strategy of Iron Uptake by Rice Grown in Flooded and Drained Soils: Insights from Fe Isotope Fractionation and Gene Expression.	J. Agric. Food Chem.	70(8)	2564-2573	2022		
50928	35118670	Zong J., Wang L., Zhu L., Bian L., Zhang B., Chen X., Huang G., Zhang X., Fan J., Cao L., Coupland G., Liang W., Zhang D., Yuan Z.	A rice single cell transcriptomic atlas defines the developmental trajectories of rice floret and inflorescence meristems.	New Phytol.	234(2)	494-512	2022		
50929	35260897	Pant B.D., Lee S., Lee H.K., Krom N., Pant P., Jang Y., Mysore K.S.	Overexpression of Arabidopsis nucleolar GTP-binding 1 (NOG1) proteins confers drought tolerance in rice.	Plant Physiol.			2022		
50930	35141931	Li D., Zhou J., Zheng C., Zheng E., Liang W., Tan X., Xu R., Yan C., Yang Y., Yi K., Liu X., Chen J., Wang X.	OsTGAL1 suppresses the resistance of rice to bacterial blight disease by regulating the expression of salicylic acid glucosyltransferase OsSGT1.	Plant Cell Environ.	45(5)	1584-1602	2022		
50931	35191960	Yang B., Chen M., Zhan C., Liu K., Cheng Y., Xie T., Zhu P., He Y., Zeng P., Tang H., Tsugama D., Chen S., Zhang H., Cheng J.	Identification of OsPK5 involved in rice glycolytic metabolism and GA/ABA balance for improving seed germination via GWAS.	J. Exp. Bot.			2022	GNP1,PKPA1,PK1,GA2OX3,ABI5,PK5,GID1,GA2OX1,PFK5,NCED1,ABA1,HXK2,PFK2,HXK6,NCED2,SLR1,ABA8OX1	GA20OX1, OsGA20ox1, 20ox1, GA20ox-1, ga20ox1, Os20ox, C20OX2, OsGA20ox2, OsGA20ox-1, GA20ox1, OsGNP1,OsPKpa1, OsPK2, PK2,OsPK1,OsGA2ox3, ga2ox 3, OsGA2ox-3, GA2ox3, GA2ox-3, GA2ox4,OsABI5, OsbZIP10, OsABF1, OREB1, OsABI5-1, OsABI5-2, OsOREB1, OREB1 ,OsPK5, OsPK10, PK10,gid1, OsGID1, Thl, Os GID1,OsGA2ox1, ga2ox-1, OsGA2ox-1, ga2ox, ga2ox 1, GA2ox1,OsPFK05, PFK05, OsPFK5, OsPFK2,OSNCED1, OsNCED-1, OsNCED3, OsNced3, NCED3, OsNCED9, NCED9,OsABA1, Zep1, OsAba1, Aba2, OsAba2, OsZep1, Zep, OsZep, Aba1, OsABA2, Osaba1, OsZEP-1, OsZEP, OSZEP1, ZEP1, ZEP,OsHXK2,OsPFK02, PFK02, OsPFK2, OsPFK1,OsHXK6,OSNCED2, OsNCED2, OsNCED5, NCED5,slr1-1, slr1, slr, GAI, OsGAI, OsSLR1, Os SLR1, OsRGA1, OsGRAS-18, OsGRAS-18, GRAS-18, GRAS18, SLR-1,OsABA8OX1, CYP707A5, OsCYP707A5, ABA8ox1, OsABA8ox1, OsABA8'OH1, ABA8'OH1 
50932	35129212	Lu L., Diao Z., Yang D., Wang X., Zheng X., Xiang X., Xiao Y., Chen Z., Wang W., Wu Y., Tang D., Li S.	The 14-3-3 protein GF14c positively regulates immunity by modulating the protein homoeostasis of the GRAS protein OsSCL7 in rice.	Plant Cell Environ.	45(4)	1065-1081	2022		
50933	35182423	Liu Z., Jiang S., Jiang L., Li W., Tang Y., He W., Wang M., Xing J., Cui Y., Lin Q., Yu F., Wang L.	Transcription factor OsSGL is a regulator of starch synthesis and grain quality in rice.	J. Exp. Bot.			2022		
50934	35356145	Nagayama T., Tatsumi A., Nakamura A., Yamaji N., Satoh S., Furukawa J., Iwai H.	Effects of polygalacturonase overexpression on pectin distribution in the elongation zones of roots under aluminium stress.	AoB Plants	14(2)	plac003	2022	PGL3	OsPGL3, OsPG2, PG2
50935	35216463	Wu Q., Liu Y., Huang J.	CRISPR-Cas9 Mediated Mutation in <i>OsPUB43</i> Improves Grain Length and Weight in Rice by Promoting Cell Proliferation in Spikelet Hull.	Int J Mol Sci	23(4)		2022	PUB43,DLT,BZR1,KRP1,MFO1,PAP2,FST ,CYCB1;1	OsPUB43,  OsPUB43, PUB43,dlt, OsGRAS32, OsDLT, OsDLT1, DTL1, OsGRAS-32, OsGRAS32, GRAS-32, GRAS32, SMOS2/DLT, SMOS2, OsSMOS2, OsGS6, GS6,OsBZR1, Os BZR1, OsBES1-6, BES1-6,OsiICK1, Orysa;KRP1, OrysaICK1, Orysa;ICK1, CDKI, OsICK1, ICK1, OsKRP1,OsMADS6, MADS6, OsMFO1,MADS34, OsMADS34, RMADS212/RMADS217/RMADS221, OsPAP2/MADS34, MADS34/PAP2, PAP2/OsMADS34, OsMADS34/PAP2, OsMADS19,OsMADS29, MADS29, OsFST,CycB1;1, CycB1;os;1, Orysa;CycB1;1, OsCycB1;1, CyclaZm, CYCIaZm, OsCYCIaZm, OsCYCB1;4
50936	35189026	Huangfu L., Chen R., Lu Y., Zhang E., Miao J., Zuo Z., Zhao Y., Zhu M., Zhang Z., Li P., Xu Y., Yao Y., Liang G., Xu C., Zhou Y., Yang Z.	OsCOMT, encoding a caffeic acid O-methyltransferase in melatonin biosynthesis, increases rice grain yield through dual regulation of leaf senescence and vascular development.	Plant Biotechnol. J.			2022	LOGL3,ROMT9,CKX4,LOGL1,CKX10,GN1A,LOGL10	OsLOGL3,COMT, OsCOMT, ROMT-9, OsCOMT1, OsCAldOMT1, CAldOMT1, OsOMT, OsCOMT15, COMT15,OsCKX4, ckx4, OsSCRM, OsSCRM2, SCRM, SCRM2,OsLOGL1,OsCKX10,Gn1a, OsCKX2, CKX2, ckx2, Gn1a/OsCKX2, Os CKX2, CKX2/Gn1a,LOGL10
50937	35216337	Zhang H., Zeng Y., Seo J., Kim Y.J., Kim S.T., Kwon S.W.	Global Identification and Characterization of C2 Domain-Containing Proteins Associated with Abiotic Stress Response in Rice (<i>Oryza sativa</i> L.).	Int J Mol Sci	23(4)		2022	CSIL2,C2DP65,C2DP60,C2DP64,C2DP9,C2DP46,PLDbeta2,NTMC2T1.4,NTMC2T2.2,C2DP78,PLDdelta1,C2DP25,NTMC2T6.1,NTMC2T1.1,C2DP24,NTMC2T4.1,PLC3,C2DP40,C2DP35,NOP,BON1 ,SRC2,FTIP1,PLDalpha1,BON3,RPP17,C2DP38,NTMC2T6.2,C2DP63,C2DP67,C2DP23,C2DP39,FTIP7,C2DP34,C2DP16,C2DP4,PLDalpha4,C2DP14,PLDalpha8,NTMC2T3,C2DP56,C2DP81,C2DP20,PLC4,NTMC2T4.2,NTMC2T5,C2DP75,PIPLC1,C2DP73,C2DP68,PLDdelta2,C2DP72,C2DP71,PLDkappa,C2DP32,C2DP66,C2DP5,AGAP,NTMC2T1.2,C2DP59,PLDbeta1,PLDalpha6,SMCP1,PLDdelta3,NTMC2T1.3,C2DP47,C2DP42,C2DP22,C2DP11,CSIL1,C2DP19,C2DP49,C2DP28,NTMC2T2.1,NTMC2T1.5,C2DP54,PLDalpha5,PLC2,PLDalpha2,RPP16,C2DP21,PLDALPHA3	OsCSIL2, OsC2DP80, C2DP80,OsSTA196, OsC2DP65,OsC2DP60,OsGAP, GAP, OsC2DP64,OsC2DP9,OsSTA148, OsC2DP46,OsPLDbeta2, OsSTA86, OsC2DP27, C2DP27,OsNTMC2T1.4, OsC2DP6, C2DP6,OsNTMC2T2.2, OsC2DP70, C2DP70,OsC2DP, C2DP, OsC2DP78,OsPLDdelta1, OsPLDdelta, OsSTA233, OsC2DP77, C2DP77,OsC2DP25,OsNTMC2T6.1, OsC2DP3, C2DP3,OsNTMC2T1.1, OsC2DP17, C2DP17,OsC2DP24,OsNTMC2T4.1, OsSYT-5, SYT-5, SYT5, OsSYT5, OsC2DP62, C2DP62,OsPLC3, OsC2DP82, C2DP82,OsC2DP40,OsC2DP35,OsNOP, OsC2DP53, C2DP53,OsBON1, OsC2DP18, C2DP18, OsvWA5, vWA5,OsSRC2, OsC2DP10, C2DP10,OsFTIP1, OsC2DP55, C2DP55,RPLD1, PLD1, OsPLDalpha1, OsC2DP2, C2DP2,OsBON3, OsC2DP45, C2DP45, OsvWA16, vWA16,Rpp17, FIERG1, OsERG1, OsERG1a, OsERG1b, OsC2DP8, C2DP8,OsC2DP38,OsNTMC2T6.2, OsC2DP15, C2DP15,OsC2DP63,OsC2DP67,OsC2DP23,OsC2DP39, OsFTIP6, FTIP6,OsFTIP7, OsC2DP44, C2DP44,OsC2DP34,OsGAP1, GAP1, OsC2DP16,OsC2DP4,OsPLDalpha4, RPLD3, OsPLDeta2, OsC2DP50, C2DP50,OsSTA54, OsC2DP14,OsPLDalpha8, OsPLDlambda, OsC2DP74, C2DP74,OsNTMC2T3, OsC2DP1, C2DP1,OsC2DP56,OsC2DP81,OsC2DP20,OsPLC4, OsC2DP41, C2DP41,OsNTMC2T4.2, OsC2DP29, C2DP29,OsNTMC2T5, OsC2DP26, C2DP26,OsC2DP75,OsPI-PLC1, PI-PLC1, OsPLC1, PLC1, OsC2DP69, C2DP69,OsC2DP73,OsC2DP68,OsPLDdelta2, RPLD5, OsPLDnu1, OsC2DP33, C2DP33,OsC2DP72,OsC2DP71,OsPLDkappa, OsC2DP12, C2DP12,OsC2DP32,OsC2DP66,OsC2DP5, OsFTIP9, FTIP9,OsAGAP, OsC2DP13, C2DP13,OsNTMC2T1.2, OsC2DP76, C2DP76,OsC2DP59,OsPLDbeta1, OsC2DP79, C2DP79,OsPLDalpha6, OsPLDeta1, OsPLDmu, OsC2DP31, C2DP31,OsSMCP1, OsC2DP58, C2DP58,OsPLDdelta3, OsPLDnu2, OsC2DP61, C2DP61,OsNTMC2T1.3, OsC2DP7, C2DP7,OsC2DP47,OsC2DP42,OsC2DP22,OsC2DP11,OsCSIL1, OsC2DP48, C2DP48,OsC2DP19,OsC2DP49,OsC2DP28,OsNTMC2T2.1, OsC2DP37, C2DP37,OsNTMC2T1.5, OsC2DP57, C2DP57,OsC2DP54,OsPLDalpha5, RPLD4, OsPLDeta3, OsC2DP51, C2DP51,OsPLC2, OsC2DP30, C2DP30,OsPLDalpha2, OsC2DP43, C2DP43,Rpp16(t), ERG3, OsERG3, OsC2DP36, C2DP36,OsC2DP21,OsPLDalpha3, RPLD2, PLDalpha3, OsPLDeta1, PLD2, OsC2DP52, C2DP52
50938	35163767	Kojonna T., Suttiyut T., Khunpolwattana N., Pongpanich M., Suriya-Arunroj D., Comai L., Buaboocha T., Chadchawan S.	Identification of a Negative Regulator for salt tolerance at Seedling Stage via a Genome-Wide Association Study of Thai Rice Populations.	Int J Mol Sci	23(3)		2022	CRN	OsCRN
50939	35020209	Huang S., Yamaji N., Sakurai G., Mitani-Ueno N., Konishi N., Ma J.F.	A pericycle-localized silicon transporter for efficient xylem loading in rice.	New Phytol.	234(1)	197-208	2022		
50940	35188194	Gao W., Li M., Yang S., Gao C., Su Y., Zeng X., Jiao Z., Xu W., Zhang M., Xia K.	miR2105 and the kinase OsSAPK10 co-regulate OsbZIP86 to mediate drought-induced ABA biosynthesis in rice.	Plant Physiol.			2022		
50941	35167131	Sheng M., Ma X., Wang J., Xue T., Li Z., Cao Y., Yu X., Zhang X., Wang Y., Xu W., Su Z.	KNOX II transcription factor HOS59 functions in regulating rice grain size.	Plant J.			2022		
50942	35119102	Wu D., Guo J., Zhang Q., Shi S., Guan W., Zhou C., Chen R., Du B., Zhu L., He G.	Necessity of rice resistance to planthoppers for OsEXO70H3 regulating SAMSL excretion and lignin deposition in cell walls.	New Phytol.	234(3)	1031-1046	2022	PAL1,_,C4H2,SAMSL,NOMT,C4H1,EXO70H3A,_,SEC15A,EXO84B,BPH6,_,SEC3A,SEC5	OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6,OsPAL04, PAL04, PAL, OsPAL7, PAL7,OsC4H, OsC4HL, C4H, OsC4H2,OsSAMSL,OsNOMT, COMTL3, OsCOMTL3, OsCOMT29, COMT29,OsC4H1, OsC4H, C4H,OsEXO70H3a, EXO70H3a, OrysaH3a_Exo70, OsEXO70H3, EXO70H3,OsPAL5, PAL5,OsSEC15A,OsEXO84B,Bph6, OsBPH6,OsPAL07, OsPAL, PAL07, OsPAL6, PAL6, PAL1, OsPAL7, PAL7,OsSEC3A,OsSEC5
50943	35214873	Zhao D.D., Park J.R., Jang Y.H., Kim E.G., Du X.X., Farooq M., Yun B.J., Kim K.M.	Identification of One Major QTL and a Novel Gene <i>OsIAA17q5</i> Associated with Tiller Number in Rice Using QTL Analysis.	Plants (Basel)	11(4)		2022	TIR1,IAA17	OsTIR1, OsFbox248, Fbox248, Os_F071, AFB,  OsFBL21, FBL21,OsIAA17, OsIAA17q5, IAA17q5
50944	35144141	Ohyama A., Tominaga R., Toriba T., Tanaka W.	D-type cyclin OsCYCD3;1 is involved in the maintenance of meristem activity to regulate branch formation in rice.	J. Plant Physiol.	270	153634	2022		
50945	35231636	Fang H., Zhang F., Zhang C., Wang D., Shen S., He F., Tao H., Wang R., Wang M., Wang D., Liu X., Luo J., Wang G.L., Ning Y.	Function of hydroxycinnamoyl transferases for the biosynthesis of phenolamides in rice resistance to Magnaporthe oryzae.	J Genet Genomics			2022		
50946	35148397	Guan Y., Liu D.F., Qiu J., Liu Z.J., He Y.N., Fang Z.J., Huang X.H., Gong J.M.	The nitrate transporter OsNPF7.9 mediates nitrate allocation and the divergent nitrate use efficiency between indica and japonica rice.	Plant Physiol.			2022		
50947	35159378	Zhang J., Zhu Y., Yu L., Yang M., Zou X., Yin C., Lin Y.	Research Advances in Cadmium Uptake, Transport and Resistance in Rice (<i>Oryza sativa</i> L.).	Cells	11(3)		2022	ZIP7,MTP1,LCT1,NRAMP1,ZIP6,LCD1,IRT1,CD1,LCD,CDT1,HIR1,ZIP3,IRT2,CAL1,HMA2	OsZIP7,OsMTP1,OsLCT1,OsNramp1, OsNRAMP1, OsNramp6,OsZIP6,NRAMP5, OsNRAMP5, OsNramp5, OsLCD1,OsIRT1, ZIP10, OsZIP10, OsZIP12, ZIP12,OsCd1,OsLCD,OsCDT1, OsCCX2, CCX2, OsNCX8, NCX8,OsHIR1, OsHSI1,OsZIP3,OsIRT2, OsIRT1, OsZIP15, ZIP15,OsCPT1, CPT1, DEFL7, OsDEFL7, OsDf-07, Df-07, OsPR12, PR12, DEF7, OsDEF7, OsAFP1, AFP1, OsPDF2.2, PDF2.2,OsHMA2, osHMA2, OsHMA2v 
50948	35166949	Lu Y., Xu Y., Li N.	Early Domestication History of Asian Rice Revealed by Mutations and Genome-Wide Analysis of Gene Genealogies.	Rice (N Y)	15(1)	11	2022	SH4,HD3A,GL1D,_,AN1,GL3.2,RC,RD	sh4, SH4, SHAT2, SHA1, qSH4, QSH4, OsSh4, Sh4, Osh4, OsMSL23, MSL23,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,OsMyb3, OSMYB3, MYB3, OsGL1D, OsMYB46, MYB46, Kala3, OsKala3, SMG3, OsSMG3, Os2R_MYB39, 2R_MYB39,OsMYB4, Osmyb4, OsMyb4, MYB4, OsMYB55, MYB55, OsMyb8, MYB8, OsMYB13b, MYB13b, OsMYB15, MYB15, Os2R_MYB46, 2R_MYB46,An-1, OsbHLH093, RAE1, An-1/RAE1, RAE1/An-1, OsRAE1, OsAn-1, OgRAE1,GL3.2,Rc, OsbHLH017, OsbHLH17, SD7-1, qSD7-1/qPC7, OsGL3C, GL3C,Rd, DFR, OsDFR, OS-DFR, OsDFR1, DFR1, DFR-1
50949	34819938	Peng X., Tun W., Dai S.F., Li J.Y., Zhang Q.J., Yin G.Y., Yoon J., Cho L.H., An G., Gao L.Z.	Genome-Wide Analysis of <i>CCT</i> Transcript Factors to Identify Genes Contributing to Photoperiodic Flowering in <i>Oryza rufipogon</i>.	Front Plant Sci	12	736419	2021		
50950	34724300	Lin D.Z., Pan Q.W., Wang X.M., Chen Y., Pan X.B., Dong Y.J.	Mutation of the rice AN1-type zinc-finger protein gene ASL4 causes chloroplast development defects and seedling lethality.	Plant Biol (Stuttg)	24(1)	95-103	2022		
50951	34841457	Song X.F., Hou X.L., Liu C.M.	CLE peptides: critical regulators for stem cell maintenance in plants.	Planta	255(1)	5	2021		
50952	34868122	Wang F., Niu H., Xin D., Long Y., Wang G., Liu Z., Li G., Zhang F., Qi M., Ye Y., Wang Z., Pei B., Hu L., Yuan C., Chen X.	<i>OsIAA18</i>, an Aux/IAA Transcription Factor Gene, Is Involved in Salt and drought tolerance in Rice.	Front Plant Sci	12	738660	2021		
50953	34899867	Khan R.M., Yu P., Sun L., Abbas A., Shah L., Xiang X., Wang D., Sohail A., Zhang Y., Liu Q., Cheng S., Cao L.	<i>DCET1</i> Controls male sterility Through Callose Regulation, Exine Formation, and Tapetal Programmed Cell Death in Rice.	Front Genet	12	790789	2021	DCET1	OsDCET1
50954	34794377	Elisafenko E.A., Evtushenko E.V., Vershinin A.V.	The origin and evolution of a two-component system of paralogous genes encoding the centromeric histone CENH3 in cereals.	BMC Plant Biol.	21(1)	541	2021		
50955	34884597	Gill R.A., Ahmar S., Ali B., Saleem M.H., Khan M.U., Zhou W., Liu S.	The Role of Membrane Transporters in Plant Growth and Development, and Abiotic Stress Tolerance.	Int J Mol Sci	22(23)		2021		
50956	34753074	Auler P.A., Nogueira do Amaral M., Bolacel Braga EJ., Maserti B.	Drought stress memory in rice guard cells: Proteome changes and genomic stability of DNA.	Plant Physiol. Biochem.	169	49-62	2021		
50957	34784745	Kabor? KH., Diagne D., Milazzo J., Adreit H., Lebrun M.H., Tharreau D.	First Report of Rice Brown Spot Caused by Exserohilum rostratum in Mali.	Plant Dis.			2021		
50958	34895540	Nayak L., Panda D., Dash G.K., Lal M.K., Swain P., Baig M.J., Kumar A.	A chloroplast Glycolate catabolic pathway bypassing the endogenous photorespiratory cycle enhances photosynthesis, biomass and yield in rice (Oryza sativa L.).	Plant Sci.	314	111103	2022		
50959	35087315	Cai L., Yan M., Yun H., Tan J., Du D., Sun H., Guo Y., Sang X., Zhang C.	Identification and fine mapping of lesion mimic mutant <i>spl36</i> in rice (<i>Oryza sativa</i> L.).	Breed. Sci.	71(5)	510-519	2021	PR1B,NH1,_,PR1A	OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1, OsPR1a, PR1a,OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2, DLN5, OsDLN5,  OsBTBA1, BTBA1,OsSPL36. SPL36,OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1, OsPR1b, PR1alpha, OsPR1alpha
50960	34778931	Kong W., Zhang C., Zhang S., Qiang Y., Zhang Y., Zhong H., Li Y.	Uncovering the Novel QTLs and Candidate Genes of salt tolerance in Rice with Linkage Mapping, RTM-GWAS, and RNA-seq.	Rice (N Y)	14(1)	93	2021		
50961	34793984	Zhou H., Zhang F., Zhai F., Su Y., Zhou Y., Ge Z., Tilak P., Eirich J., Finkemeier I., Fu L., Li Z., Yang J., Shen W., Yuan X., Xie Y.	Rice GLUTATHIONE PEROXIDASE1-mediated oxidation of bZIP68 positively regulates ABA-independent osmotic stress signaling.	Mol Plant	15(4)	651-670	2022		
50962	34829057	Zhu Y., Xu D., Ma Z., Chen X., Zhang M., Zhang C., Liu G., Wei H., Zhang H.	Differences in Eating Quality Attributes between Japonica Rice from the Northeast Region and Semiglutinous Japonica Rice from the Yangtze River Delta of China.	Foods	10(11)		2021		
50963	34909275	Li G., Cheng Y., Yin M., Yang J., Ying J., Zhu C.	Detection of QTLs for panicle-related traits using an <i>indica</i> ~ <i>japonica</i> recombinant inbred line population in rice.	PeerJ	9	e12504	2021		
50964	34618076	Miao Y., Shi W., Wang H., Xue Z., You H., Zhang F., Du G., Tang D., Li Y., Shen Y., Cheng Z.	Replication protein A large subunit (RPA1a) limits chiasma formation during rice meiosis.	Plant Physiol.	187(3)	1605-1618	2021		
50965	35087326	Takai T., Lumanglas P., Fujita D., Sasaki K., Rakotoarisoa N.M., Tsujimoto Y., Kobayashi N., Simon E.V.	Development and evaluation of pyramiding lines carrying early or late heading QTLs in the <i>indica</i> rice cultivar 'IR64'.	Breed. Sci.	71(5)	615-621	2021		
50966	34793914	Ullah I., Mateen A., Ahmad M.A., Munir I., Iqbal A., Alghamdi K.M.S., Al-Solami HM., Siddiqui M.F.	Heavy metal ATPase genes (HMAs) expression induced by endophytic bacteria, "AI001, and AI002" mediate cadmium translocation and phytoremediation.	Environ. Pollut.	293	118508	2022		
50967	34655492	Li R., Zhang J., Li Z., Peters R.J., Yang B.	Dissecting the labdane-related diterpenoid biosynthetic gene clusters in rice reveals directional cross-cluster phytotoxicity.	New Phytol.	233(2)	878-889	2022		
50968	34834819	Jayawardhane J., Wijesinghe MKPS., Bykova N.V., Igamberdiev A.U.	Metabolic Changes in Seed Embryos of Hypoxia-Tolerant Rice and Hypoxia-Sensitive Barley at the Onset of Germination.	Plants (Basel)	10(11)		2021		
50969	34730685	Yazid S.N., Ahmad K., Razak MSFA., Rahman Z.A., Ramachandran K., Mohamad S.N.A., Ghaffar M.B.A.	Introgression of bacterial leaf blight (BLB) resistant gene, Xa7 into MARDI elite variety, MR219 by marker assisted backcrossing (MABC) approach.	Braz J Biol	84	e248359	2021		
50970	34774681	Gupta A., Nair S.	Methylation patterns of Tf2 retrotransposons linked to rapid adaptive stress response in the brown planthopper (Nilaparvata lugens).	Genomics	113(6)	4214-4226	2021		
50971	34899799	Luo H., Duan M., Kong L., He L., Chen Y., Wang Z., Tang X.	The Regulatory Mechanism of 2-Acetyl-1-Pyrroline Biosynthesis in Fragrant Rice (<i>Oryza sativa</i> L.) Under Different Soil Moisture Contents.	Front Plant Sci	12	772728	2021		
50972	34731272	Fujino K., Kawahara Y., Shirasawa K.	Artificial selection in the expansion of rice cultivation.	Theor. Appl. Genet.	135(1)	291-299	2022		
50973	34801067	Tian Y., Lin C.Y., Park J.H., Wu C.Y., Kakumanu R., Pidatala V.R., Vuu K.M., Rodriguez A., Shih P.M., Baidoo E.E.K., Temple S., Simmons B.A., Gladden J.M., Scheller H.V., Eudes A.	Overexpression of the rice BAHD acyltransferase AT10 increases xylan-bound p-coumarate and reduces lignin in Sorghum bicolor.	Biotechnol Biofuels	14(1)	217	2021		
50974	34801931	Gao Y., Xue C.Y., Liu J.M., He Y., Mei Q., Wei S., Xuan Y.H.	Sheath blight resistance in rice is negatively regulated by WRKY53 via SWEET2a activation.	Biochem. Biophys. Res. Commun.	585	117-123	2021		
50975	34761379	Xu W., Zhu W., Yang L., Liang W., Li H., Yang L., Chen M., Luo Z., Huang G., Duan L., Dreni L., Zhang D.	SMALL REPRODUCTIVE ORGANS, a SUPERMAN-like transcription factor, regulates stamen and pistil growth in rice.	New Phytol.	233(4)	1701-1718	2022	SRO	OsSRO
50976	34926111	Kulkarni S.R., Balachandran S.M., Ulaganathan K., Balakrishnan D., Prasad A.S.H., Rekha G., Kousik MBVN., Hajira S.K., Kale R.R., Aleena D., Anila M., Punniakoti E., Dilip T., Pranathi K., Das M.A., Shaik M., Chaitra K., Sinha P., Sundaram R.M.	Mapping novel QTLs for yield related traits from a popular rice hybrid KRH-2 derived doubled haploid (DH) population.	3 Biotech	11(12)	513	2021		
50977	34790215	Xiao P., Feng J.W., Zhu X.T., Gao J.	Evolution Analyses of CAMTA Transcription Factor in Plants and Its Enhancing Effect on Cold-tolerance.	Front Plant Sci	12	758187	2021	CBT,CAMTA6,CAMTA4,CAMTA3,SCT1,CAMTA	OsCBT, DLN185, OsDLN185, OsCAMTA5, CAMTA5,OsCAMTA6, OsCAMTA3, CAMTA3,OsCAMTA4, OsCAMTA6, CAMTA6,OsCAMTA3, SCT2, OsSCT2, OsCAMTA2, CAMTA2,OsSCT1, OsCAMTA1, CAMTA1,OsCAMTA, qSCT1, OsCAMTA4, CAMTA4
50978	34845865	Singh U.M., Dixit S., Alam S., Yadav S., Prasanth V.V., Singh A.K., Venkateshwarlu C., Abbai R., Vipparla A.K., Badri J., Ram T., Prasad M.S., Laha G.S., Singh V.K., Kumar A.	Marker-assisted forward breeding to develop a drought-, bacterial-leaf-blight-, and blast-resistant rice cultivar.	Plant Genome	15(1)	e20170	2022		
50979	34961039	Hussain T., Hussain N., Ahmed M., Nualsri C., Duangpan S.	Responses of Lowland Rice Genotypes under Terminal Water Stress and Identification of Drought Tolerance to Stabilize Rice Productivity in Southern Thailand.	Plants (Basel)	10(12)		2021		
50980	34800993	Li C., Liu J., Bian J., Jin T., Zou B., Liu S., Zhang X., Wang P., Tan J., Wu G., Chen Q., Wang Y., Zhong Q., Huang S., Yang M., Huang T., He H., Bian J.	Identification of cold tolerance QTLs at the bud burst stage in 211 rice landraces by GWAS.	BMC Plant Biol.	21(1)	542	2021		
50981	34804103	Lv Y., Ma J., Wang Y., Wang Q., Lu X., Hu H., Qian Q., Guo L., Shang L.	Loci and Natural Alleles for Low-Nitrogen-Induced Growth Response Revealed by the Genome-Wide Association Study Analysis in Rice (<i>Oryza sativa</i> L.).	Front Plant Sci	12	770736	2021		
50982	34753955	Achary V.M.M., Reddy M.K.	CRISPR-Cas9 mediated mutation in GRAIN WIDTH and WEIGHT2 (GW2) locus improves aleurone layer and grain nutritional quality in rice.	Sci Rep	11(1)	21941	2021		
50983	34792681	Deb S., Madhavan V.N., Gokulan C.G., Patel H.K., Sonti R.V.	Arms and ammunitions: effectors at the interface of rice and it's pathogens and pests.	Rice (N Y)	14(1)	94	2021		
50984	34858454	Wu Y., Liu J., Hu G., Xue H., Xu H., Zhao C., Qin R., Cui F., Sun H.	Functional Analysis of the "Green Revolution" Gene <i>Photoperiod-1</i> and Its Selection Trends During Bread Wheat Breeding.	Front Plant Sci	12	745411	2021		
50985	34731589	Joe A., Stewart V., Ronald P.C.	The HrpX Protein Activates Synthesis of the RaxX sulfopeptide, Required for Activation of Xa21-Mediated Immunity to <i>Xanthomonas oryzae</i> pv. <i>oryzae</i>.	Mol. Plant Microbe Interact.	34(11)	1307-1315	2021		
50986	34834770	Mo Y., Lee C.M., Park H.M., Ha S.K., Kim M.J., Kwak J., Lee H.S., Lee J.H., Jeung J.U.	<i>Hd1</i> Allele Types and Their Associations with Major Agronomic Traits in Korean Rice Cultivars.	Plants (Basel)	10(11)		2021		
50987	34762912	Gavgani H.N., Fawaz R., Ehyaei N., Walls D., Pawlowski K., Fulgos R., Park S., Assar Z., Ghanbarpour A., Geiger J.H.	A structural explanation for the mechanism and specificity of plant branching enzymes I and IIb.	J. Biol. Chem.	298(1)	101395	2022	SBE1,SBE3	sbe1, Rbe1. Sbe1, sbe1*(QEI), RBE1, BEI, SBE I, QEI, OsBEI, BE1, OsSBE1, OsSBEI, SBEI,SBEIII*, SBEIII, Sbe3, RBE3, QEIIa, QEIIA, BEIIb, BEIIB, SBEIIb, OsBEIIb, sbe3, SBE III, OsSBEIIb, SBEIIb
50988	34871988	Challabathula D., Analin B., Mohanan A., Bakka K.	Differential modulation of photosynthesis, ROS and antioxidant enzyme activities in stress-sensitive and -tolerant rice cultivars during salinity and drought upon restriction of COX and AOX pathways of mitochondrial oxidative electron transport.	J. Plant Physiol.	268	153583	2022		
50989	34848349	Werner T., Schm?lling T.	Moonlighting PPKL1 reveals a role of cytokinin in regulating rice grain size.	Mol Plant	15(2)	216-218	2022		
50990	34783652	De la Concepcion JC., Vega Benjumea J., Bialas A., Terauchi R., Kamoun S., Banfield M.J.	Functional diversification gave rise to allelic specialization in a rice NLR immune receptor pair.	Elife	10		2021		
50991	34822039	Ma X., Li C., Huang R., Zhang K., Wang Q., Fu C., Liu W., Sun C., Wang P., Wang F., Deng X.	Rice Brittle Culm19 Encoding Cellulose Synthase Subunit CESA4 Causes Dominant Brittle Phenotype But has No Distinct Influence on Growth and grain yield.	Rice (N Y)	14(1)	95	2021		
50992	34900961	Liu T., Yuan L., Deng S., Zhang X., Cai H., Ding G., Xu F., Shi L., Wu G., Wang C.	Improved the Activity of phosphite dehydrogenase and its Application in Plant Biotechnology.	Front Bioeng Biotechnol	9	764188	2021		
50993	34742846	Wang Y., Liu M., Li J., Wei H., Zhang K.	Experimental and in silico studies of competitive inhibition of family GH10 Aspergillus fumigatus xylanase A by Oryza sativa xylanase inhibitor protein.	Int. J. Biol. Macromol.	193(Pt B)	1391-1399	2021		
50994	34735664	Yu W.Q., Li P., Yan F.C., Zheng G.P., Liu W.Z., Lin W.X., Wang Y., Luo Z.Q.	Protein Elicitor EsxA Induces Resistance to Seedling Blight and PR Genes Differential Transcription in Rice.	Rice (N Y)	14(1)	91	2021		
50995	34908899	Ishihara A.	Defense mechanisms involving secondary metabolism in the grass family.	Journal of Pesticide Science	46(4)	382-392	2021		
50996	34806841	Deng X., Kong W., Sun T., Zhang C., Zhong H., Zhao G., Liu X., Qiang Y., Li Y.	Bin mapping-based QTL analyses using three genetic populations derived from indica-japonica crosses uncover multiple grain shape heterosis-related loci in rice.	Plant Genome	15(1)	e20171	2022		
50997	34731625	Ren L., Zhao T., Zhao Y., Du G., Yang S., Mu N., Tang D., Shen Y., Li Y., Cheng Z.	The E3 ubiquitin ligase DESYNAPSIS1 regulates synapsis and recombination in rice meiosis.	Cell Rep	37(5)	109941	2021	HEI10,DLC1,RMC1,ZEP1,ZIP4,PAIR2,CRC1,DSNP1	HEI10A, HEI10B, OsHEI10,  OsRING434, RING434,RR24, OsRR24, Rrb2, Orr4, OsRR17, RR17, OsRRB2, OsRR24/LEPTO1, OsLEPTO1, LEPTO1, OsDLC1,MER3, mer3, OsMER3, RCK, OsRCK, Os-MER3,OsZEP1,OsZIP4, SPO22, OsSPO22,Pair2, OsPAIR2, OsASY1,OsCRC1,OsCLR1, CLR1, OsDSNP1,  OsRING318, RING318
50998	34773550	Abady S.M., M Ghanem K., Ghanem N.B., Embaby A.M.	Molecular cloning, heterologous expression, and in silico sequence analysis of Enterobacter GH19 class I chitinase (chiRAM gene).	Mol. Biol. Rep.	49(2)	951-969	2022		
50999	34825287	Liu Y., Zhang F., Luo X., Kong D., Zhang A., Wang F., Pan Z., Wang J., Bi J., Luo L., Liu G., Yu X.	Molecular Breeding of a Novel PTGMS Line of WDR for Broad-Spectrum Resistance to Blast Using Pi9, Pi5, and Pi54 Genes.	Rice (N Y)	14(1)	96	2021		
51000	34852912	Gao Y., Xue C.Y., Liu J.M., He Y., Mei Q., Wei S., Xuan Y.H.	Corrigendum to "Sheath blight resistance in rice is negatively regulated by WRKY53 via SWEET2a activation" [Biochem. Biophys. Res. Commun. 585(2021) 117-123].	Biochem. Biophys. Res. Commun.	587	167	2022		
51001	34884656	You L., Yu L., Liang R., Sun R., Hu F., Lu X., Zhao J.	Identification and Analysis of Genes Involved in Double Fertilization in Rice.	Int J Mol Sci	22(23)		2021	FEB1,FEB3,FEB2	OsFEB1,OsFEB3,OsFEB2
51002	34775177	Wang S., Liu W., He Y., Adegoke T.V., Ying J., Tong X., Li Z., Tang L., Wang H., Zhang J., Tian Z., Wang Y.	bZIP72 promotes submerged rice seed germination and coleoptile elongation by activating ADH1.	Plant Physiol. Biochem.	169	112-118	2021		
51003	34839203	Farooq M.U., Ishaaq I., Barutcular C., Skalicky M., Maqbool R., Rastogi A., Hussain S., Allakhverdiev S.I., Zhu J.	Mitigation effects of selenium on accumulation of cadmium and morpho-physiological properties in rice varieties.	Plant Physiol. Biochem.	170	1-13	2022		
51004	34899812	Pan Y., Chen L., Zhao Y., Guo H., Li J., Rashid M.A.R., Lu C., Zhou W., Yang X., Liang Y., Wu H., Qing D., Gao L., Dai G., Li D., Deng G.	Natural Variation in <i>OsMKK3</i> Contributes to grain size and Chalkiness in Rice.	Front Plant Sci	12	784037	2021		
51005	34812974	Zakari S.A., Zaidi S.H.R., Sunusi M., Dauda K.D.	Nitrogen deficiency regulates premature senescence by modulating flag leaf function, ROS homeostasis, and intercellular sugar concentration in rice during grain filling.	J Genet Eng Biotechnol	19(1)	177	2021		
51006	34868173	Li F., Han Z., Qiao W., Wang J., Song Y., Cui Y., Li J., Ge J., Lou D., Fan W., Li D., Nong B., Zhang Z., Cheng Y., Zhang L., Zheng X., Yang Q.	High-Quality Genomes and High-Density Genetic Map Facilitate the Identification of Genes From a Weedy Rice.	Front Plant Sci	12	775051	2021		
51007	34868277	Ali M.K., Sun Z.H., Yang X.M., Pu X.Y., Duan C.L., Li X., Wang L.X., Yang J.Z., Zeng Y.W.	NILs of Cold Tolerant <i>Japonica</i> Cultivar Exhibited New QTLs for Mineral Elements in Rice.	Front Genet	12	789645	2021		
51008	34728643	Carrillo M.G.C., Martin F., Variar M., Bhatt J.C., L Perez-Quintero A., Leung H., Leach J.E., Vera Cruz CM.	Accumulating candidate genes for broad-spectrum resistance to rice blast in a drought-tolerant rice cultivar.	Sci Rep	11(1)	21502	2021		
51009	34782773	Lu Y., Wang J., Chen B., Mo S., Lian L., Luo Y., Ding D., Ding Y., Cao Q., Li Y., Li Y., Liu G., Hou Q., Cheng T., Wei J., Zhang Y., Chen G., Song C., Hu Q., Sun S., Fan G., Wang Y., Liu Z., Song B., Zhu J.K., Li H., Jiang L.	A donor-DNA-free CRISPR/Cas-based approach to gene knock-up in rice.	Nat Plants	7(11)	1445-1452	2021		
51010	34805117	Fu J., Shi Y., Liu L., Liu B.	Cellular Localization of Exogenous Cry1Ab/c and its Interaction with plasma membrane Ca2+-ATPase in Transgenic Rice.	Front Bioeng Biotechnol	9	759016	2021		
51011	34856765	Adak M.K., Saha I., Dolui D., Hasanuzzaman M.	An updated overview of the physiological and molecular responses of rice to anoxia.	Front Biosci (Landmark Ed)	26(11)	1240-1255	2021		
51012	34943791	Yariuchi Y., Okamoto T., Noutoshi Y., Takahashi T.	Responses of Polyamine-Metabolic Genes to Polyamines and Plant Stress Hormones in Arabidopsis Seedlings.	Cells	10(12)		2021		
51013	34748132	Gui Y., Tian D., Ong K.H., Teo J.C.Y., Yin Z.	TAL effector-dependent Bax gene expression in transgenic rice confers disease resistance to Xanthomonas oryzae pv. oryzae.	Transgenic Res.	31(1)	119-130	2022		
51014	34884461	Shen W., Cao S., Liu J., Zhang W., Chen J., Li J.F.	Overexpression of an osa-miR162a Derivative in Rice Confers Cross-Kingdom RNA Interference-Mediated Brown Planthopper Resistance without Perturbing Host Development.	Int J Mol Sci	22(23)		2021		
51015	34736486	Wang S., Xiao Y., Zhou Z.W., Yuan J., Guo H., Yang Z., Yang J., Sun P., Sun L., Deng Y., Xie W.Z., Song J.M., Qamar M.T.U., Xia W., Liu R., Gong S., Wang Y., Wang F., Liu X., Fernie A.R., Wang X., Fan H., Chen L.L., Luo J.	High-quality reference genome sequences of two coconut cultivars provide insights into evolution of monocot chromosomes and differentiation of fiber content and plant height.	Genome Biol.	22(1)	304	2021		
51016	34750721	Tappiban P., Hu Y., Deng J., Zhao J., Ying Y., Zhang Z., Xu F., Bao J.	Relative importance of branching enzyme isoforms in determining starch fine structure and physicochemical properties of indica rice.	Plant Mol. Biol.	108(4-5)	399-412	2022		
51017	34837515	Lo S.F., Chatterjee J., Biswal A.K., Liu I.L., Chang Y.P., Chen P.J., Wanchana S., Elmido-Mabilangan A., Nepomuceno R.A., Bandyopadhyay A., Hsing Y.I., Quick W.P.	Closer vein spacing by ectopic expression of nucleotide-binding and leucine-rich repeat proteins in rice leaves.	Plant Cell Rep.	41(2)	319-335	2022	G2-NB-LRR,G7-NB-LRR	OsG2-NB-LRR, CVS-G2, OsCVS-G2,OsG7-NB-LRR, CVS-G7, OsCVS-G7
51018	34746989	Hassan D.A., Hama-Ali EO.	Evaluation of gene flow and genetic diversity in rice accessions across Kurdistan region-iraq using SSR markers.	Mol. Biol. Rep.	49(2)	1007-1016	2022		
51019	34764271	Zhou Y.F., Zhang Y.C., Sun Y.M., Yu Y., Lei M.Q., Yang Y.W., Lian J.P., Feng Y.Z., Zhang Z., Yang L., He R.R., Huang J.H., Cheng Y., Liu Y.W., Chen Y.Q.	The parent-of-origin lncRNA MISSEN regulates rice endosperm development.	Nat Commun	12(1)	6525	2021	MISSEN,PLS2	OsMISSEN,RBP-59, OsRBP-59, OsPLS2, HeFP, OsHeFP, OsDNA2_7, DNA2_7
51020	34704657	Liu H., Shen E., Wu H., Ma W., Chen H., Lin Y.	Trans-kingdom expression of an insect endogenous microRNA in rice enhances resistance to striped stem borer Chilo suppressalis.	Pest Manag. Sci.	78(2)	770-777	2022		
51021	34826005	Xiong Y., Zhang C., Zhou H., Sun W., Wang P., Wang D., Qiu X., Ali J., Yu S.	Identification of Heterotic Loci with Desirable Allelic Interaction to Increase Yield in Rice.	Rice (N Y)	14(1)	97	2021	HD5	Hd5(t)*, Hd5, qHD5, HAP3H, OsHAP3H, NF-YB, CBF-A, DTH8 , qHD5(t)*, Ghd8, Ghd8/DTH8, Lhd1, NF-YB11, OsNF-YB11, NFYB11, LH8, DTH8/Ghd8, RH8, DTH8/Ghd8/LHD1, CAR8, DTH8/Ghd8/ OsHAP3H, EF8, OsEF8
51022	34822009	Shinya T., Miyamoto K., Uchida K., Hojo Y., Yumoto E., Okada K., Yamane H., Galis I.	Chitooligosaccharide elicitor and oxylipins synergistically elevate phytoalexin production in rice.	Plant Mol. Biol.			2021		
51023	34725701	Young Chae G., Hong W.J., Jeong Jang M., Jung K.H., Kim S.	Recurrent mutations promote widespread structural and functional divergence of MULE-derived genes in plants.	Nucleic Acids Res.	49(20)	11765-11777	2021		
51024	34895541	Liu Z., Meng J., Sun Z., Su J., Luo X., Song J., Li P., Sun Y., Yu C., Peng X.	Zinc application after low temperature stress promoted rice tillers recovery: Aspects of nutrient absorption and plant hormone regulation.	Plant Sci.	314	111104	2022		
51025	34807926	Chen J., Liu K., Zha W., Zhou L., Li M., Xu H., Li P., Chen Z., Yang G., Chen P., Li S., You A.	Identification and verification of grain shape QTLs by SNP array in rice.	PLoS ONE	16(11)	e0260133	2021		
51026	34846546	Zhang Z., Zhong H., Nan B., Xiao B.	Global identification and integrated analysis of heat-responsive long non-coding RNAs in contrasting rice cultivars.	Theor. Appl. Genet.	135(3)	833-852	2022		
51027	34828437	Zhao M., Hu B., Fan Y., Ding G., Yang W., Chen Y., Chen Y., Xie J., Zhang F.	Identification, Analysis, and Confirmation of Seed Storability-Related Loci in Dongxiang Wild Rice (<i>Oryza rufipogon</i> Griff.).	Genes (Basel)	12(11)		2021		
51028	34844633	Cheng L., Huang F., Jiang Z., Lu B., Zhong X., Qiu Y.	Improved phenotyping procedure for evaluating resistance in rice against gall midge (Orseolia oryzae, Wood-Mason).	Plant Methods	17(1)	121	2021		
51029	34785317	Kawano Y.	Fine-tuning ROS homeostasis by ROD1 is a battleground between rice and Magnaporthe oryzae.	Mol Plant	14(12)	1979-1981	2021		
51030	35067302	Nguyen T.M., Lu C.A., Huang L.F.	Applications of CRISPR/Cas9 in a rice protein expression system via an intron-targeted insertion approach.	Plant Sci.	315	111132	2022		
51031	34829098	Haldipur A.C., Srividya N.	Multi-Mechanistic In Vitro Evaluation of Antihyperglycemic, Antioxidant and Antiglycation Activities of Three Phenolic-Rich Indian Red Rice Genotypes and In Silico Evaluation of Their Phenolic Metabolites.	Foods	10(11)		2021		
51032	34819939	Lee C., Chung C.T., Hong W.J., Lee Y.S., Lee J.H., Koh H.J., Jung K.H.	Transcriptional Changes in the Developing Rice Seeds Under Salt Stress Suggest Targets for Manipulating seed quality.	Front Plant Sci	12	748273	2021		
51033	34814097	Wu D., Li Y., Cao Y., Hu R., Wu X., Zhang W., Tao W., Xu G., Wang X., Zhang Y.	Increased glutamine synthetase by overexpression of TaGS1 improves grain yield and nitrogen use efficiency in rice.	Plant Physiol. Biochem.	169	259-268	2021		
51034	34924712	Sahoo K.K., Gupta B.K., Kaur C., Joshi R., Pareek A., Sopory S.K., Singla-Pareek SL.	Methylglyoxal-glyoxalase system as a possible selection module for raising marker-safe plants in rice.	Physiol Mol Biol Plants	27(11)	2579-2588	2021		
51035	34961035	Thant A.A., Zaw H., Kalousova M., Singh R.K., Lojka B.	Genetic Diversity and Population Structure of Myanmar Rice (<i>Oryza sativa</i> L.) Varieties Using DArTseq-Based SNP and SilicoDArT Markers.	Plants (Basel)	10(12)		2021		
51036	34906796	Wu J., Lu Y., Di D., Cai Y., Zhang C., Kronzucker H.J., Shi W., Gu K.	OsGF14b is involved in regulating coarse root and fine root biomass partitioning in response to elevated [CO2] in rice.	J. Plant Physiol.	268	153586	2022		
51037	34874500	Lee C.M., Suh J.P., Park H.S., Baek M.K., Jeong O.Y., Yun S.J., Cho Y.C., Kim S.M.	Identification of QTL Combinations that Cause Spikelet Sterility in Rice Derived from Interspecific Crosses.	Rice (N Y)	14(1)	99	2021		
51038	34875419	Li J., Zhang Z., Chong K., Xu Y.	Chilling tolerance in rice: Past and present.	J. Plant Physiol.	268	153576	2022		
51039	34857773	Zhou J., Hu Q., Xiao X., Yao D., Ge S., Ye J., Li H., Cai R., Liu R., Meng F., Wang C., Zhu J.K., Lei M., Xing W.	Mechanism of phosphate sensing and signaling revealed by rice SPX1-PHR2 complex structure.	Nat Commun	12(1)	7040	2021	SPX1,PHR2	OsSPX1,OsPHR2, Os-PHR2
51040	34975949	Yoshioka H., Kimura K., Ogo Y., Ohtsuki N., Nishizawa-Yokoi A., Itoh H., Toki S., Izawa T.	Real-Time Monitoring of Key Gene Products Involved in Rice Photoperiodic Flowering.	Front Plant Sci	12	766450	2021		
51041	35035138	Nounjan N., Theerakulpisut P.	Physiological evaluation for salt tolerance in green and purple leaf color rice cultivars at seedling stage.	Physiol Mol Biol Plants	27(12)	2819-2832	2021		
51042	34945567	Sampaio P.S., Almeida A.S., Brites C.M.	Use of Artificial Neural Network Model for Rice Quality Prediction Based on Grain Physical Parameters.	Foods	10(12)		2021		
51043	35009094	Mavri? ?ermelj A., Golob A., Vogel-Miku? K., Germ M.	Silicon Mitigates Negative Impacts of Drought and UV-B Radiation in Plants.	Plants (Basel)	11(1)		2021		
51044	34952182	Singh P.K., Chakrabarty D., Dwivedi S., Kumar A., Singh S.P., Sinam G., Niranjan A., Singh P.C., Chatterjee S., Majumdar D., Tiwari M., Tripathi R.D.	Nitric oxide-mediated alleviation of arsenic stress involving metalloid detoxification and physiological responses in rice (Oryza sativa L.).	Environ. Pollut.	297	118694	2022		
51045	34922452	Ali I., Ullah S., Iqbal A., Quan Z., Liang H., Ahmad S., Muhammad I., Amanullah, Imran, Guo Z., Wei S., Jiang L.	Combined application of biochar and nitrogen fertilizer promotes the activity of starch metabolism enzymes and the expression of related genes in rice in a dual cropping system.	BMC Plant Biol.	21(1)	600	2021	WX1,RSUS4,AGPS2,SBE3,SSI,PHS8	wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx,SUS4, SS4, OsScS4, RSs4, RSus4, OsSUS4,OsAGPS2a, AGPS2A, AGPS2B, OsAGPS2, osagps2, APS2, APS2a, APS2b, AGPS2a, APGS2b, OsAGPS2b, AGPP, GAS8, OsAPS2, OsAPS2a, OsAPS2b,SBEIII*, SBEIII, Sbe3, RBE3, QEIIa, QEIIA, BEIIb, BEIIB, SBEIIb, OsBEIIb, sbe3, SBE III, OsSBEIIb, SBEIIb,OsSSI, SSS 1, SSS1, SS1, OsSS1, SSSI, OsSSSI,ISA1, OsISA1, ISA, OsISA, PHS8/ISA1, OsPHS8, ISA I, OsISA I, ISAI, OsISAI
51046	34992240	Kan Y., Mu X.R., Zhang H., Gao J., Shan J.X., Ye W.W., Lin H.X.	TT2 controls rice thermotolerance through SCT1-dependent alteration of wax biosynthesis.	Nat Plants	8(1)	53-67	2022	ERF1,CAMTA3,LK3,SCT1	Os06ERF, OsWR2, WR2, OsERF#001, OsERF001, OsERF1, AP2/EREBP#057, AP2/EREBP57, RD1, OsSHN, SHN,OsCAMTA3, SCT2, OsSCT2, OsCAMTA2, CAMTA2,lk3(t), lk3(t)*, SG3, GS3, SG3-GS3, OsGW3, OsGS3, RGG3/GS3/Mi/OsGGC1, RGG3, Mi, OsGGC1, GGC1, OsSYL3, SYL3, TT2, OsTT2,OsSCT1, OsCAMTA1, CAMTA1
51047	35087314	Nguyen C.D., Zheng S.H., Sanada-Morimura S., Matsumura M., Yasui H., Fujita D.	Substitution mapping and characterization of brown planthopper resistance genes from <i>indica</i> rice variety, 'PTB33' (<i>Oryza sativa</i> L.).	Breed. Sci.	71(5)	497-509	2021		
51048	35008551	Zuo Z.W., Zhang Z.H., Huang D.R., Fan Y.Y., Yu S.B., Zhuang J.Y., Zhu Y.J.	Control of Thousand-grain weight by <i>OsMADS56</i> in Rice.	Int J Mol Sci	23(1)		2021		
51049	34773305	Liu H., Jiang L., Wen Z., Yang Y., Singer S.D., Bennett D., Xu W., Su Z., Yu Z., Cohn J., Chae H., Que Q., Liu Y., Liu C., Liu Z.	Rice RS2-9, which is bound by transcription factor OSH1, blocks enhancer-promoter interactions in plants.	Plant J.	109(3)	541-554	2022		
51050	34950167	Zhang L., Sun X., Li Y., Luo X., Song S., Chen Y., Wang X., Mao D., Chen L., Luan S.	Rice Na+-Permeable Transporter OsHAK12 Mediates Shoots Na+ Exclusion in Response to Salt Stress.	Front Plant Sci	12	771746	2021		
51051	34893895	Neogy A., Garg T., Kumar A., Dwivedi A.K., Singh H., Singh U., Singh Z., Prasad K., Jain M., Yadav S.R.	Corrigendum to: Genome-Wide Transcript Profiling Reveals an Auxin-Responsive Transcription Factor, OsAP2/ERF-40, Promoting Rice Adventitious Root Development.	Plant Cell Physiol.	62(11)	1786	2021		
51052	34618084	Sun L., Yuan Z., Wang D., Li J., Shi J., Hu Y., Yu J., Chen X., Chen S., Liang W., Zhang D.	Carbon Starved Anther modulates sugar and ABA metabolism to protect rice seed germination and seedling fitness.	Plant Physiol.	187(4)	2405-2418	2021		
51053	34890109	Zhou Y., Xu S., Jiang N., Zhao X., Bai Z., Liu J., Yao W., Tang Q., Xiao G., Lv C., Wang K., Hu X., Tan J., Yang Y.	Engineering of rice varieties with enhanced resistances to both blast and bacterial blight diseases via CRISPR/Cas9.	Plant Biotechnol. J.			2021		
51054	34902177	Beasley J.T., Bonneau J.P., Moreno-Moyano LT., Callahan D.L., Howell K.S., Tako E., Taylor J., Glahn R.P., Appels R., Johnson A.A.T.	Multi-year field evaluation of nicotianamine biofortified bread wheat.	Plant J.	109(5)	1168-1182	2022		
51055	34975985	Qu Z., Jia Y., Duan Y., Chen H., Wang X., Zheng H., Liu H., Wang J., Zou D., Zhao H.	Integrated Isoform Sequencing and Dynamic Transcriptome Analysis Reveals Diverse Transcripts Responsible for Low Temperature Stress at Anther Meiosis Stage in Rice.	Front Plant Sci	12	795834	2021		
51056	35340358	Majumder R.R., Sandhu N., Yadav S., Catolos M., Cruz M.T.S., Maturan P.C., Hassan L., Hossain M.A., Kumar A.	Genetic Dissection of Epistatic Interactions Contributing grain yield Variability in Rice under Drought.	Curr. Genomics	22(6)	468-483	2021		
51057	34942523	Li Z., Du X., Wen L., Li Y., Qin J., Chen Z., Huang Y., Wu X., Luo H., Lin Y., Ye H.	Transcriptome analysis reveals the involvement of ubiquitin-proteasome pathway in the regulation of muscle growth of rice flower carp.	Comp. Biochem. Physiol. Part D Genomics Proteomics	41	100948	2022		
51058	34261357	Xing J., Zhang D., Yin F., Zhong Q., Wang B., Xiao S., Ke X., Wang L., Zhang Y., Zhao C., Lu Y., Chen L., Cheng Z., Chen L.	Identification and Fine-Mapping of a New Bacterial Blight Resistance Gene, <i>Xa47(t),</i> in G252, an Introgression Line of Yuanjiang Common Wild Rice (<i>Oryza rufipogon</i>).	Plant Dis.	105(12)	4106-4112	2021	XA47	Xa47, OsXa47, Xa47(t)
51059	34498036	Baertschi C., Cao T.V., Bartholom? J., Ospina Y., Quintero C., Frouin J., Bouvet J.M., Grenier C.	Impact of early genomic prediction for recurrent selection in an upland rice synthetic population.	G3 (Bethesda)	11(12)		2021		
51060	35221580	Sanghamitra P., Bose L.K., Bagchi T.B., Kumar A., Roy P.S., Moharana N., Patra B.C., Padmavati G., Chattopadhyay K.	Characterization and exploring genetic potential of landraces from Odisha with special emphasis on grain micronutrient content for benefaction of biofortification in rice.	Physiol Mol Biol Plants	28(1)	203-221	2022		
51061	34898612	Shultana R., Kee Zuan AT., Yusop M.R., Saud H.M., El-Shehawi AM.	Bacillus tequilensis strain 'UPMRB9' improves biochemical attributes and nutrient accumulation in different rice varieties under salinity stress.	PLoS ONE	16(12)	e0260869	2021		
51062	34992623	Jan R., Kim N., Lee S.H., Khan M.A., Asaf S., Lubna, Park J.R., Asif S., Lee I.J., Kim K.M.	Enhanced Flavonoid Accumulation Reduces Combined Salt and Heat Stress Through Regulation of Transcriptional and Hormonal Mechanisms.	Front Plant Sci	12	796956	2021		
51063	34498083	Nagalla A.D., Nishide N., Hibara K.I., Izawa T.	High Ambient Temperatures Inhibit Ghd7-Mediated Flowering Repression in Rice.	Plant Cell Physiol.	62(11)	1745-1759	2021		
51064	34918053	Tanaka W., Ohmori S., Kawakami N., Hirano H.Y.	Flower meristem maintenance by TILLERS ABSENT 1 is essential for ovule development in rice.	Development	148(24)		2021		
51065	34904518	Sisaphaithong T., Yanase M., Mano T., Tanabe S., Minami E., Tanaka A., Hata S., Kobae Y.	Localized expression of the <i>Dwarf14-like2a</i> gene in rice roots on infection of arbuscular mycorrhizal fungus and hydrolysis of <i>rac</i>-GR24 by the encoded protein.	Plant Signal Behav	16(12)	2009998	2021	D14L3,D14L2	OsD14L3, D14L2b, OsD14L2b,OsD14L2, D14L2a, OsD14L2a
51066	34945643	Feng L., Lu C., Yang Y., Lu Y., Li Q., Huang L., Fan X., Liu Q., Zhang C.	The Physicochemical Properties of Starch Are Affected by <i>Wxlv</i> in <i>Indica</i> Rice.	Foods	10(12)		2021		
51067	35035140	Luo H., Xing P., Liu J., Pan S., Tang X., Duan M.	Selenium improved antioxidant response and photosynthesis in fragrant rice (<i>Oryza sativa</i> L.) seedlings during drought stress.	Physiol Mol Biol Plants	27(12)	2849-2858	2021		
51068	35035143	Chattopadhyay K., Chakraborty K., Samal P., Sarkar R.K.	Identification of QTLs for stagnant flooding tolerance in rice employing genotyping by sequencing of a RIL population derived from Swarna?~?Rashpanjor.	Physiol Mol Biol Plants	27(12)	2893-2909	2021		
51069	35067308	Li C., Liu X.J., Yan Y., Alam M.S., Liu Z., Yang Z.K., Tao R.F., Yue E.K., Duan M.H., Xu J.H.	OsLHY is involved in regulating flowering through the Hd1- and Ehd1- mediated pathways in rice (Oryza sativa L.).	Plant Sci.	315	111145	2022		
51070	34855066	Wang M., Wang J.	Transcriptome and DNA methylome analyses provide insight into the heterosis in flag leaf of inter-subspecific hybrid rice.	Plant Mol. Biol.	108(1-2)	105-125	2022		
51071	35249642	Mehta S., Kumar A., Achary V.M.M., Ganesan P., Patel A., Singh A., Rathi N., Das T.K., Lal S.K., Reddy M.K.	Antifungal and defense elicitor activity of Potassium phosphite against fungal blast disease on ptxD-OE transgenic indica rice and its acceptor parent.	Pestic Biochem Physiol	182	105026	2022		
51072	34962412	Zhao H., Liu Y., Jia M.H., Jia Y.	An Allelic Variant of the Broad-Spectrum Blast Resistance Gene Ptr in Weedy Rice is Associated with Resistance to the Most Virulent Blast Race IB-33.	Plant Dis.			2021		
51073	34879072	Qu L., Chu Y.J., Lin W.H., Xue H.W.	A secretory Phospholipase D hydrolyzes phosphatidylcholine to suppress rice heading time.	PLoS Genet.	17(12)	e1009905	2021	RAP1A,MADS18,PLDvarphi,HD3A,RAP1B,PAP2	OsMADS15, FDRMADS3, RMADS215, MADS15, DEP,OsMADS18, MADS2, OsMADS2, MADS28, OsMADS28, FDRMADS7, OsMADS18/28,OsPLDvarphi, spPLD, OsspPLD,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,MADS14, OsMADS14, FDRMADS6, RMADS211, AGL10,MADS34, OsMADS34, RMADS212/RMADS217/RMADS221, OsPAP2/MADS34, MADS34/PAP2, PAP2/OsMADS34, OsMADS34/PAP2, OsMADS19
51074	35035144	Sathee L., Krishna G.K., Adavi S.B., Jha S.K., Jain V.	Role of protein phosphatases in the regulation of nitrogen nutrition in plants.	Physiol Mol Biol Plants	27(12)	2911-2922	2021		
51075	34971465	Mittal L., Tayyeba S., Sinha A.K.	Finding a breather for Oryza sativa: Understanding hormone signalling pathways involved in rice plants to submergence stress.	Plant Cell Environ.	45(2)	279-295	2022		
51076	34817108	Taylor-Kearney LJ., Flashman E.	Targeting plant cysteine oxidase activity for improved submergence tolerance.	Plant J.	109(4)	779-788	2022		
51077	34878652	Lan T., Yang X., Chen J., Tian P., Shi L., Yu Y., Liu L., Gao L., Mo B., Chen X., Tang G.	Mechanism for the genomic and functional evolution of the miR2118 family in the grass lineage.	New Phytol.	233(4)	1915-1930	2022		
51078	34961210	Liang Y., Wang S., Harper C.L., Subramanian N.K., Tabien R.E., Johnson C.D., Bailey-Serres J., Septiningsih E.M.	Reference-Guided De Novo Genome Assembly to Dissect a QTL Region for submergence tolerance Derived from Ciherang-Sub1.	Plants (Basel)	10(12)		2021		
51079	34904413	Wang Y., Wang Y., Yang R., Wang F., Fu J., Yang W., Bai T., Wang S., Yin H.	Effects of gibberellin priming on seedling emergence and transcripts involved in mesocotyl elongation in rice under deep direct-seeding conditions.	J Zhejiang Univ Sci B	22(12)	1002-1021	2021	MIF1,GH3-2,KAO,AMY3E,BZR1,SLRL1,SAUR11,AMY2A,TCP5,MYBAS1,BHLH101	OsMIF1,OsGH3-2, OsGH3.2, GH3.2,OsKAO, kao, CYP88A5, OSKAO, Os KAO, RPE1, KO1,Amy3D/E*(RAmy3D/E), alpha Amy8, alphaAmy8, AmyII-3, AMY1.4, Amy3E, Amy3D/E*, RAmy3D/E, Amy9, RAmy3E, alphaAmy8-C, AMY3E/AMY1.4, OsAmy3E, OsRamy3E,OsBZR1, Os BZR1, OsBES1-6, BES1-6,OsSLRL1, OsGAI, OsSLRL, OsGRAS-1, OsGRAS1, GAI, SLRL, GRAS-1, GRAS1,OsSAUR11,Amy2A*(RAmy2A), AMY1.5, AMYC2, RAmy2A, Amy4, Amy2A,OsTCP5,OsMYBAS1, Os2R_MYB92, 2R_MYB92,OsbHLH101, bHLH101, OsPIF1, PIF1
51080	34960924	Mohd Basri MS., Mustapha F., Mazlan N., Ishak M.R.	Rice Husk Ash-Based Geopolymer Binder: Compressive Strength, Optimize Composition, FTIR Spectroscopy, Microstructural, and Potential as Fire-Retardant Material.	Polymers (Basel)	13(24)		2021		
51081	34713554	Mao C., Zhu X., Wang P., Sun Y., Huang R., Zhao M., Hull J.J., Lin Y., Zhou F., Chen H., Ma W.	Transgenic double-stranded RNA rice, a potential strategy for controlling striped stem borer (Chilo suppressalis).	Pest Manag. Sci.	78(2)	785-792	2022		
51082	34862679	Feijao C., Morreel K., Anders N., Tryfona T., Busse-Wicher M., Kotake T., Boerjan W., Dupree P.	Hydroxycinnamic acid-modified xylan side chains and their cross-linking products in rice cell walls are reduced in the Xylosyl arabinosyl substitution of xylan 1 mutant.	Plant J.	109(5)	1152-1167	2022		
51083	34902099	Wang M., Chen J., Zhou F., Yuan J., Chen L., Wu R., Liu Y., Zhang Q.	The ties of brotherhood between japonica and indica rice for regional adaptation.	Sci China Life Sci			2021		
51084	34973427	Liu X., Hu B., Chu C.	Nitrogen assimilation in plants: current status and future prospects.	J Genet Genomics			2021		
51085	35008768	Sadura I., Janeczko A.	Brassinosteroids and the Tolerance of Cereals to Low and High Temperature Stress: Photosynthesis and the Physicochemical Properties of Cell Membranes.	Int J Mol Sci	23(1)		2021		
51086	34929504	Kaur S., Chowhan N., Sharma P., Rathee S., Singh H.P., Batish D.R.	beta-Pinene alleviates arsenic (As)-induced oxidative stress by modulating enzymatic antioxidant activities in roots of Oryza sativa.	Ecotoxicol. Environ. Saf.	229	113080	2022		
51087	35386188	Niranjan V., Rao A., Janaki B., Uttarkar A., Setlur A.S., Chandrashekar K., Udayakumar M.	Molecular Docking and Interaction Studies of Identified Abscisic Acid Receptors in <i>Oryza sativa:</i> An <i>In-Silico</i> Perspective on Comprehending Stress Tolerance Mechanisms.	Curr. Genomics	22(8)	607-619	2021		
51088	34750914	Wang Y., Sun J., Deng C., Teng S., Chen G., Chen Z., Cui X., Brutnell T.P., Han X., Zhang Z., Lu T.	Plasma membrane-localized SEM1 protein mediates sugar movement to sink rice tissues.	Plant J.	109(3)	523-540	2022		
51089	34839552	Gao X., Zhang J., Li J., Wang Y., Zhang R., Du H., Yin J., Cai G., Wang R., Zhang B., Zhao Z., Zhang H., Huang J.	The phosphoproteomic and interactomic landscape of qGL3/OsPPKL1-mediated brassinosteroid signaling in rice.	Plant J.	109(5)	1048-1063	2022		
51090	34948165	Wu Y.P., Wang S.M., Chang Y.C., Ho C., Hsu Y.C.	Submergence Gene <i>Sub1A</i> Transfer into Drought-Tolerant <i>japonica</i> Rice DT3 Using Marker-Assisted Selection.	Int J Mol Sci	22(24)		2021		
51091	34966577	Wang M., Mo Z., Lin R., Zhu C.	Characterization and expression analysis of the SPL gene family during floral development and abiotic stress in pecan (<i>Carya illinoinensis</i>).	PeerJ	9	e12490	2021		
51092	35151439	Asfaw K.G., Liu Q., Eghbalian R., Purper S., Akaberi S., Dhakarey R., M?nch SW., Wehl I., Br?se S., Eiche E., Hause B., Bogeski I., Schepers U., Riemann M., Nick P.	The jasmonate biosynthesis Gene OsOPR7 can mitigate salinity induced mitochondrial oxidative stress.	Plant Sci.	316	111156	2022		
51093	34979311	Adil M.F., Sehar S., Chen S., Lwalaba J.L.W., Jilani G., Chen Z.H., Shamsi I.H.	Stress signaling convergence and nutrient crosstalk determine zinc-mediated amelioration against cadmium toxicity in rice.	Ecotoxicol. Environ. Saf.	230	113128	2021		
51094	34914086	Jha Y., Dehury B., Kumar S.P.J., Chaurasia A., Singh U.B., Yadav M.K., Angadi U.B., Ranjan R., Tripathy M., Subramanian R.B., Kumar S., Simal-Gandara J.	Delineation of molecular interactions of plant growth promoting bacteria induced beta-1,3-glucanases and guanosine triphosphate ligand for antifungal response in rice: a molecular dynamics approach.	Mol. Biol. Rep.	49(4)	2579-2589	2022		
51095	35151453	Jing H.K., Wu Q., Huang J., Yang X.Z., Tao Y., Shen R.F., Zhu X.F.	Putrescine is involved in root cell wall phosphorus remobilization in a nitric oxide dependent manner.	Plant Sci.	316	111169	2022		
51096	34935587	Mmbando G.S., Teranishi M., Hidema J.	Transgenic rice <i>Oryza glaberrima</i> with higher CPD photolyase activity alleviates UVB-caused growth inhibition.	GM Crops Food	12(1)	435-448	2021		
51097	34329461	Akamatsu A., Fujiwara M., Hamada S., Wakabayashi M., Yao A., Wang Q., Kosami K.I., Dang T.T., Kaneko-Kawano T., Fukada F., Shimamoto K., Kawano Y.	The small GTPase OsRac1 Forms Two Distinct Immune Receptor Complexes Containing the PRR OsCERK1 and the NLR Pit.	Plant Cell Physiol.	62(11)	1662-1675	2021		
51098	34950175	Li N., Ren G.	Systematic Characterization of MicroRNA Processing Modes in Plants With Parallel Amplification of RNA Ends.	Front Plant Sci	12	793549	2021		
51099	34915172	Cai L., Liu Z., Cai L., Yan X., Hu Y., Hao B., Xu Z., Tian Y., Liu X., Liu L., Jiang L., Zhou S., Wan J.	Nuclear encoded elongation factor EF-Tu is required for chloroplast development in rice grown under low-temperature conditions.	J Genet Genomics			2021		
51100	34925399	Sonsungsan P., Chantanakool P., Suratanee A., Buaboocha T., Comai L., Chadchawan S., Plaimas K.	Identification of Key Genes in 'Luang Pratahn', Thai Salt-Tolerant Rice, Based on Time-Course Data and Weighted Co-expression Networks.	Front Plant Sci	12	744654	2021		
51101	34953293	Wang G., Li B., Peng D., Zhao H., Lu M., Zhang L., Li J., Zhang S., Guan C., Ji J.	Combined application of H2S and a plant growth promoting strain JIL321 regulates photosynthetic efficacy, soil enzyme activity and growth-promotion in rice under salt stress.	Microbiol. Res.	256	126943	2022		
51102	35003178	Liu Q., Dong G.R., Ma Y.Q., Zhao S.M., Liu X., Li X.K., Li Y.J., Hou B.K.	Rice Glycosyltransferase Gene <i>UGT85E1</i> Is Involved in Drought Stress Tolerance Through Enhancing Abscisic Acid Response.	Front Plant Sci	12	790195	2021	APX2,ABI5,DREB1A,CATB,UGT85E1,ERA1,SODB,LEA22,ABA4,CATA,ABA2,BZIP23,RAB16A,NCED1,ERF32	OsAPX2, OsAPx02, APXb, OsAPx2, OSAPX2, APx2, cAPX, OsAPX1, APX1,OsABI5, OsbZIP10, OsABF1, OREB1, OsABI5-1, OsABI5-2, OsOREB1, OREB1 ,OsDREB1A, Os DREB1A, CBF3, OsCBF3, OsDREB1A/OsCBF3, ERF24, OsERF24, OsERF024, OsERF#024, AP2/EREBP#114, AP2/EREBP114, OsDREBL,CatB, CAT-B, OsCatB, OsCATB, OsCAT1B, CAT1B, CAT2, OsCAT2,OsUGT85E1,OsERA1, OsERA1.1, OsERA1.2, OsABA1, ABA1, OsPFT-beta, PFT-beta,SodB, Fe-SOD, Fe- SOD, OsFe-SOD, Fe+-SOD, OsFe+-SOD, OsFe-SODa, OsFe-SODb, OsFeSODb, FeSODb, OsFSD1.2, FSD1.2, FeSOD2, OsFSD2, FSD2, OsFSD1, FSD1, ALM1, OsALM1,OsLEA22, RAB25, OsRab16, Rab16, OsABA45, ABA45,OsMHZ4, MHZ4, MHZ4/OsABA4, OsABA4,CATA1, Cat A1*, OSCAT-A, Cat2, CatA1, CAT-A, OsCatA, OsCAT, CAT, catA, OSCATA, OsCATc, OsCATA, OsCAT1A, CAT1, OsCAT1, OsCATC, OsCAT2,OsABA2, OsSDR, SDR,OsbZIP23, OsAREB1, OsABF2, Osbzip23, OsAREB2, OsZIP23, ZIP23,Rab16A, rab21, RAB21, OsRab21, OsRAB21, OsRAB-21, OsRab16A, OsLEA29, rab16A, OsRAB16A,OsNCED1, OsCCD4a, CCD4a,OsERF#032, OsERF032, OsERF32, AP2/EREBP#021, AP2/EREBP21, OsDREB2B
51103	34883148	Huang H., Tang Z.X., Qi H.Y., Ren X.T., Zhao F.J., Wang P.	Soil amendments with ZnSO4 or MnSO4 are effective at reducing Cd accumulation in rice grain: An application of the voltaic cell principle.	Environ. Pollut.	294	118650	2022		
51104	34949802	Xu W., Yang Y., Yang B., Krueger C.J., Xiao Q., Zhao S., Zhang L., Kang G., Wang F., Yi H., Ren W., Li L., He X., Zhang C., Zhang B., Zhao J., Yang J.	A design optimized prime editor with expanded scope and capability in plants.	Nat Plants	8(1)	45-52	2022		
51105	34618027	Kawasaki A., Dennis P.G., Forstner C., Raghavendra A.K.H., Mathesius U., Richardson A.E., Delhaize E., Gilliham M., Watt M., Ryan P.R.	Manipulating exudate composition from root apices shapes the microbiome throughout the root system.	Plant Physiol.	187(4)	2279-2295	2021		
51106	34965853	Erkes A., M?cke S., Reschke M., Boch J., Grau J.	Epigenetic features improve TALE target prediction.	BMC Genomics	22(1)	914	2021		
51107	35283666	Bhadouriya S.L., Suresh A., Gupta H., Mehrotra S., Gupta D., Mehrotra R.	<i>In Silico</i> Analysis of CCGAC and CATGTG <i>Cis-regulatory</i> Elements Across Genomes Reveals their Roles in Gene Regulation under Stress.	Curr. Genomics	22(5)	353-362	2021		
51108	34902082	Yu R., Wu X., Liu J., Howitt C.A., Bird A.R., Liu C.M., Larkin P.J.	Rice with Multilayer Aleurone: A Larger Sink for Multiple Micronutrients.	Rice (N Y)	14(1)	102	2021	TA2	ROS1A, ROS1a, DME1, OsROS1A, OsROS1, ROS1, mOsROS1, ROS1A/DNG702, DNG702, OsDNG702
51109	34995970	Niu H., Sun Y., Zhang Z., Zhao D., Wang N., Wang L., Guo H.	The endophytic bacterial entomopathogen Serratia marcescens promotes plant growth and improves resistance against Nilaparvata lugens in rice.	Microbiol. Res.	256	126956	2022		
51110	34949668	Li C., Gent J.I., Xu H., Fu H., Russell S.D., Sundaresan V.	Resetting of the 24-nt siRNA landscape in rice zygotes.	Genome Res.	32(2)	309-323	2022		
51111	35010222	Nakamura S., Satoh A., Aizawa M., Ohtsubo K.	Characteristics of Physicochemical Properties of Chalky Grains of <i>Japonica</i> Rice Generated by High Temperature during Ripening.	Foods	11(1)		2021		
51112	35211144	Fujita T., Beier M.P., Tabuchi-Kobayashi M., Hayatsu Y., Nakamura H., Umetsu-Ohashi T., Sasaki K., Ishiyama K., Murozuka E., Kojima M., Sakakibara H., Sawa Y., Miyao A., Hayakawa T., Yamaya T., Kojima S.	Cytosolic glutamine synthetase GS1;3 Is Involved in Rice Grain Ripening and Germination.	Front Plant Sci	13	835835	2022		
51113	35095949	Siddiqui Z.S., Lee G.S., Cho W., Jeong M.J., Park S.C., Kwon T.R., Zulfiqar F., Umar M., Abideen Z., Uddin Z., Ansari H.H., Wajid D., Cho J.I.	Physiological Aspects of Germination and Early Seedling Establishment of <i>Pleurotus sajor-caju</i> Glyceraldehyde-3-Phosphate Dehydrogenase Expressing Transgenic Rice in Saline Environment.	Front Plant Sci	12	767826	2021		
51114	35221577	Nihad S.A.I., Hasan M.K., Kabir A., Hasan M.A., Bhuiyan M.R., Yusop M.R., Latif M.A.	Linkage of SSR markers with rice blast resistance and development of partial resistant advanced lines of rice (<i>Oryza sativa</i>) through marker-assisted selection.	Physiol Mol Biol Plants	28(1)	153-169	2022		
51115	34989532	Li L.F., Wang Y.H., Li Y.C., Tang M.D., Li Q., Ai S.Y.	[Inhibitory Effects of Soil Amendment Coupled with Water Management on the Accumulation of Cd and Pb in Double-Cropping Rice].	Huan Jing Ke Xue	43(1)	472-480	2022		
51116	35083581	Nagamatsu S., Wada T., Matsushima R., Fujita N., Miura S., Crofts N., Hosaka Y., Yamaguchi O., Kumamaru T.	Mutation in BEIIb mitigates the negative effect of the mutation in ISA1 on grain filling and amyloplast formation in rice.	Plant Mol. Biol.	108(4-5)	497-512	2022		
51117	35084629	Veerabhadraswamy M., Sindhumole P., Mathew D., Shylaja M.R., Joseph J., Augustine R., James D.	Molecular analysis of aroma gene (BADH2) in Biriyanicheera: a tropical aromatic rice genotype from Kerala, India.	Mol. Biol. Rep.	49(4)	3149-3155	2022		
51118	35028856	Kogure K., Watanabe A., Ito Y.	Interaction of ONION2 ketoacyl CoA synthase with ketoacyl CoA reductase of rice.	Mol. Biol. Rep.	49(2)	1643-1647	2022		
51119	35073185	Arefian M., Antil N., Najar M.A., Behera S.K., Subba P., Prasad T.S.K.	Identifying Novel Genes and Proteins Involved in Salt Stress Perception and Signaling of Rice Seedlings.	OMICS	26(3)	151-164	2022		
51120	35038039	Mandal V.K., Jangam A.P., Chakraborty N., Raghuram N.	Nitrate-responsive transcriptome analysis reveals additional genes/processes and associated traits viz. height, tillering, heading date, stomatal density and yield in japonica rice.	Planta	255(2)	42	2022		
51121	35281797	Islam M.R., Naveed S.A., Zhang Y., Li Z., Zhao X., Fiaz S., Zhang F., Wu Z., Hu Z., Fu B., Shi Y., Shah S.M., Xu J., Wang W.	Identification of Candidate Genes for Salinity and Anaerobic Tolerance at the Germination Stage in Rice by Genome-Wide Association Analyses.	Front Genet	13	822516	2022		
51122	35015162	Liu L., Zhou Y., Mao F., Gu Y., Tang Z., Xin Y., Liu F., Tang T., Gao H., Zhao X.	Fine-Tuning of the grain size.by Alternative Splicing of GS3 in Rice.	Rice (N Y)	15(1)	4	2022		
51123	35295635	Fu J., Shi Y., Wang L., Tian T., Li J., Gong L., Zheng Z., Jing M., Fang J., Ji R.	Planthopper-Secreted Salivary Calmodulin Acts as an Effector for Defense Responses in Rice.	Front Plant Sci	13	841378	2022		
51124	35028494	Um T., Choi J., Park T., Chung P.J., Jung S.E., Shim J.S., Kim Y.S., Choi I.Y., Park S.C., Oh S.J., Seo J.S., Kim J.K.	Rice <i>microRNA171f/SCL6</i> module enhances drought tolerance by regulation of flavonoid biosynthesis genes.	Plant Direct	6(1)	e374	2022	MIR171F,TCM5,CHS,F3'H8,ARC3,CYP93G2,CYP93G1,GRAS31,4CL2,HAM1,F3'H,CHI7	miR171f, osa-miR171f, osa-miR171f-3p osa-miR171f-5p,OsDegp7, DEGP7, OsDeg10, DEPG10, OsDEPG10,CHS*, Oschs, chs, chas, OsCHS, OsCHS1, CHS1, OsPKS26, PKS26, OsCHS24, CHS24, OsCHS27, CHS27,OsF3'H, F3'H, OsF3'H8, OsCYP71W8, CYP71W8,OsARC3,OsCYP93G2, OsF2H, F2H, OsCYP71S1, CYP71S1,OsCYP93G1, OsFNSII, FNSII, OsCYP71S4, CYP71S4,OsGRAS-31, OsGRAS31, GRAS-31, OsGRAS28, GRAS28, SCL6-I, OsSCL6-I,Os4CL2,OsSCL1, SCL1, OsHAM1, OsGRAS-9, OsGRAS-9, GRAS-9, GRAS9, OsGRAS8, GRAS8, SCL6-II, OsSCL6-II,OsF3'H, OsCYP75B3, CYP75B3, OsF3'H10, F3'H10, OsCYP71P3, CYP71P3,CHI, OsCHI, OsCHI7, OsCHIL2, CHIL2
51125	34783157	Tu B., Tao Z., Wang S., Zhou L., Zheng L., Zhang C., Li X., Zhang X., Yin J., Zhu X., Yuan H., Li T., Chen W., Qin P., Ma B., Wang Y., Li S.	Loss of Gn1a/OsCKX2 confers heavy-panicle rice with excellent lodging resistance.	J Integr Plant Biol	64(1)	23-38	2022		
51126	35111178	Prerostova S., Jarosova J., Dobrev P.I., Hluskova L., Motyka V., Filepova R., Knirsch V., Gaudinova A., Kieber J., Vankova R.	Heat Stress Targeting Individual Organs Reveals the Central Role of Roots and Crowns in Rice Stress Responses.	Front Plant Sci	12	799249	2021		
51127	35161356	Hern?ndez-Soto A., P?rez J., Fait-Z??iga R., Rojas-V?squez R., Gatica-Arias A., Vargas-Segura W., Abdelnour-Esquivel A.	A Temporary Immersion System Improves Regeneration of In Vitro Irradiated Recalcitrant Indica Rice (<i>Oryza sativa</i> L.) Embryogenic Calli.	Plants (Basel)	11(3)		2022		
51128	35286332	Din M.S.U., Wang X., Alamery S., Fiaz S., Rasheed H., Khan M.A., Khan S.U., Saeed S., Ali N., Marwat K.U., Attia K., Kimiko I., Wani S.H.	Identification of C-T novel polymorphism in 3rd exon of OsSPL14 gene governing seed sequence in rice.	PLoS ONE	17(3)	e0264478	2022		
51129	35163531	Garcia R.S., Coronejo S., Concepcion J., Subudhi P.K.	Whole-Genome Sequencing and RNA-Seq Reveal Differences in Genetic Mechanism for Flowering Response between Weedy Rice and Cultivated Rice.	Int J Mol Sci	23(3)		2022		
51130	35356125	Yang W., Chen L., Zhao J., Wang J., Li W., Yang T., Dong J., Ma Y., Zhou L., Chen J., Wu W., Zhang S., Liu B.	Genome-Wide Association Study of Pericarp Color in Rice Using Different Germplasm and Phenotyping Methods Reveals Different Genetic Architectures.	Front Plant Sci	13	841191	2022		
51131	35161357	Nagai K., Kurokawa Y., Mori Y., Minami A., Reuscher S., Wu J., Matsumoto T., Ashikari M.	<i>SNORKEL</i> Genes Relating to Flood Tolerance Were Pseudogenized in Normal Cultivated Rice.	Plants (Basel)	11(3)		2022	SNK2,_,ERF110,ERF112,SNK1,_,SKL1,ERF111	SK2, OsSK2, OsSNK2,,OsERF#110, OsERF110, AP2/EREBP#008, AP2/EREBP8, SKL2, OsSKL2, SKL2-1, SKL2-2, SKL2-1Nipponbare, SKL2-2C9285,OsERF#112, OsERF112, AP2/EREBP#009, AP2/EREBP9, SKL3, OsSKL3, SKL3-1, SKL3-2, SKL3-3, SKL3-1C9285, SKL3-2Nipponbare, SKL3-3C9285,SK1, OsSK1, OsSNK1, SK1C9285,,OsSKL1, SKL1Nipponbare,OsERF#111, OsERF111, SKL4, OsSKL4, SKL4-1, SKL4-2, SKL4-1Nipponbare, SKL4-2C9285
51132	35324949	Waqas Mazhar M., Ishtiaq M., Hussain I., Parveen A., Hayat Bhatti K., Azeem M., Thind S., Ajaib M., Maqbool M., Sardar T., Muzammil K., Nasir N.	Seed nano-priming with Zinc Oxide nanoparticles in rice mitigates drought and enhances agronomic profile.	PLoS ONE	17(3)	e0264967	2022		
51133	35401612	Zhang Y., Zhou J., Xu P., Li J., Deng X., Deng W., Yang Y., Yu Y., Pu Q., Tao D.	A Genetic Resource for Rice Improvement: Introgression Library of Agronomic Traits for All AA Genome <i>Oryza</i> Species.	Front Plant Sci	13	856514	2022		
51134	35204090	Huang X., Huang L., Zhao X., Jia J., Zhang G., Zhang M., Jiang M.	A J-Protein OsDjC46 Interacts with ZFP36 to Participate in ABA-Mediated Antioxidant Defense in Rice.	Antioxidants (Basel)	11(2)		2022		
51135	35016986	Wu Q., Liu C., Wang Z., Gao T., Liu Y., Xia Y., Yin R., Qi M.	Zinc regulation of iron uptake and translocation in rice (Oryza sativa L.): Implication from stable iron isotopes and transporter genes.	Environ. Pollut.	297	118818	2022		
51136	35100268	B LP., K S D., C H DR., R J., G R., Sinha P., D A., G H., S K M., K SR., V N KMB., H K MS., M A., R R KRR., T DK., E P., S K H., V P B., R M S.	Marker assisted pedigree breeding based improvement of the Indian mega variety of rice MTU1010 for resistance against bacterial blight and blast and tolerance to low soil phosphorus.	PLoS ONE	17(1)	e0260535	2022		
51137	35163555	Carey-Fung O., O'Brien M., Beasley J.T., Johnson A.A.T.	A Model to Incorporate the bHLH Transcription Factor OsIRO3 within the Rice Iron Homeostasis Regulatory Network.	Int J Mol Sci	23(3)		2022		
51138	35114616	Meng Y., Ma X., Li J., Ito H., Oracz K., Cai J., Shao C.	The novel activity of Argonautes in intron splicing: A transcriptome-wide survey in plants.	J. Plant Physiol.	270	153632	2022		
51139	35163383	Wu L., Wang X., Yu Z., Cui X., Xu Q.	Simultaneous Improvement of grain yield and Quality through Manipulating Two Type C G Protein Gamma Subunits in Rice.	Int J Mol Sci	23(3)		2022		
51140	35069634	Kim S.H., Ji S.D., Lee H.S., Jeon Y.A., Shim K.C., Adeva C., Luong N.H., Yuan P., Kim H.J., Tai T.H., Ahn S.N.	A Novel Embryo Phenotype Associated With Interspecific Hybrid Weakness in Rice Is Controlled by the MADS-Domain Transcription Factor <i>OsMADS8</i>.	Front Plant Sci	12	778008	2021		
51141	35046494	Kawai K., Takehara S., Kashio T., Morii M., Sugihara A., Yoshimura H., Ito A., Hattori M., Toda Y., Kojima M., Takebayashi Y., Furuumi H., Nonomura K.I., Mikami B., Akagi T., Sakakibara H., Kitano H., Matsuoka M., Ueguchi-Tanaka M.	Evolutionary alterations in gene expression and enzymatic activities of gibberellin 3-oxidase 1 in Oryza.	Commun Biol	5(1)	67	2022		
51142	35163461	Kim E.G., Yun S., Park J.R., Jang Y.H., Farooq M., Yun B.J., Kim K.M.	Bio-Efficacy of Chrysoeriol7, a Natural Chemical and Repellent, against Brown Planthopper in Rice.	Int J Mol Sci	23(3)		2022		
51143	35419296	Yi W., Chen C., Gan X.	Polymyxin B1 and E2 From <i>Paenibacillus polymyxa</i> Y-1 for Controlling Rice Bacterial Disease.	Front Cell Infect Microbiol	12	866357	2022		
51144	34991658	Deng L., Gao B., Zhao L., Zhang Y., Zhang Q., Guo M., Yang Y., Wang S., Xie L., Lou H., Ma M., Zhang W., Cao Z., Zhang Q., McClung C.R., Li G., Li X.	Diurnal RNAPII-tethered chromatin interactions are associated with rhythmic gene expression in rice.	Genome Biol.	23(1)	7	2022		
51145	35237292	Mahreen N., Yasmin S., Asif M., Yousaf S., Yahya M., Ejaz K., Shahid Hussain H., Sajjid Z.I., Arif M.	Integrated Analysis of Osmotic Stress and Infrared Thermal Imaging for the Selection of Resilient Rice Under Water Scarcity.	Front Plant Sci	13	834520	2022		
51146	34643728	Bahuguna R.N., Chaturvedi A.K., Pal M., Viswanathan C., Jagadish S.V.K., Pareek A.	Carbon dioxide responsiveness mitigates rice yield loss under high night temperature.	Plant Physiol.	188(1)	285-300	2022		
51147	34985538	Deng Y., Wan Y., Liu W., Zhang L., Zhou K., Feng P., He G., Wang N.	OsFLA1 encodes a fasciclin-like arabinogalactan protein and affects pollen exine development in rice.	Theor. Appl. Genet.	135(4)	1247-1262	2022		
51148	35386667	Yang Y., Zhou Y., Sun J., Liang W., Chen X., Wang X., Zhou J., Yu C., Wang J., Wu S., Yao X., Zhou Y., Zhu J., Yan C., Zheng B., Chen J.	Research Progress on Cloning and Function of <i>Xa</i> Genes Against Rice Bacterial Blight.	Front Plant Sci	13	847199	2022		
51149	35299956	Liang W., Hu F., Qi W., Zhao C., Chen T., Wang C., Lv Y., Zhang Y.	Comprehensive Transcriptome Analysis of <i>GS3</i> Near-Isogenic Lines During Panicle Development in Rice (<i>Oryza sativa</i> L.).	Front Genet	13	857143	2022		
51150	35281847	Kumar S., Bhati J., Saha A., Lal S.B., Pandey P.K., Mishra D.C., Farooqi M.S., Kumar A., Chaturvedi K.K., Rai A.	CerealESTDb: A Comprehensive Resource for Abiotic Stress-Responsive Annotated ESTs With Predicted Genes, Gene Ontology, and Metabolic Pathways in Major Cereal Crops.	Front Genet	13	842868	2022		
51151	35222481	Chen G., Hu K., Zhao J., Guo F., Shan W., Jiang Q., Zhang J., Guo Z., Feng Z., Chen Z., Wu X., Zhang S., Zuo S.	Genome-Wide Association Analysis for Salt-Induced Phenotypic and Physiologic Responses in Rice at Seedling and Reproductive Stages.	Front Plant Sci	13	822618	2022		
51152	35422822	Zhang G.	The Next Generation of Rice: Inter-Subspecific <i>Indica</i>-<i>Japonica</i> Hybrid Rice.	Front Plant Sci	13	857896	2022		
51153	35295554	Li J., Zhang L., G Elbaiomy R., Chen L., Wang Z., Jiao J., Zhu J., Zhou W., Chen B., Soaud S.A., Abbas M., Lin N., El-Sappah AH.	Evolution analysis of <i>FRIZZY PANICLE</i> (<i>FZP</i>) orthologs explored the mutations in DNA coding sequences in the grass family (Poaceae).	PeerJ	10	e12880	2022		
51154	35360326	Moon H., Jeong A.R., Kwon O.K., Park C.J.	<i>Oryza</i>-Specific Orphan Protein Triggers Enhanced Resistance to <i>Xanthomonas oryzae</i> pv. <i>oryzae</i> in Rice.	Front Plant Sci	13	859375	2022	APX8,XIO1,RSOSPR10,SIT1,LOX8,XA21,CHT1	OsAPx8, OsAPx08, OSAPX8, APx8, OsAPX8,OsSTA221, Xio1, OsXio1,RSOsPR10, RsOsPR10a, OsPR10a, OsPR10alpha, OsPR10, PR10, OsBETV1, BETV1,OsSIT1,OsLOX8, OsLOX9, LOX9, OsLOX2;3, LOX2;3, OsLOX2, OsLOX1, CM-LOX8,Xa21*, Xa21, OsXA21,Cht1*(Chi1), Ch16, Cht1, CHT-1, CH16, RC24, OsChia1a, OsChia1, Chi1, Cht1*, Chi-1, Cht-1, Cht1, RCC1, OsCht-1, PR3, OsPR3
51155	35200465	Nduka D.O., Olawuyi B.J., Joshua O.O., Omuh I.O.	A Study on Gel/Space Ratio Development in Binary Mixture Containing Portland Cement and Meta-Illite Calcined Clay/Rice Husk Ash.	Gels	8(2)		2022		
51156	35386681	Sheng C., Yu D., Li X., Yu H., Zhang Y., Saqib Bilal M., Ma H., Zhang X., Baig A., Nie P., Zhao H.	<i>OsAPX1</i> Positively Contributes to Rice Blast Resistance.	Front Plant Sci	13	843271	2022		
51157	35360876	Li L.P., Zhang B., Cheng L.	CPIELA: Computational Prediction of Plant protein-protein Interactions by Ensemble Learning Approach From Protein Sequences and Evolutionary Information.	Front Genet	13	857839	2022		
51158	34996704	Wang R., Xu X., Wang G.L., Ning Y.	Ubiquitination of susceptibility proteins modulates rice broad-spectrum resistance.	Trends Plant Sci.	27(4)	322-324	2022		
51159	35129126	Dasari A., Vemulapalli P., Gonuguntla R., Thota D.K., Elumalai P., Muppavarapu K., Butam L.P., Kulkarni S.R., Sinha P., Gunukula H., Kale R.R., Muralidhara A.D., Shaik H., Miriyala A., Karnati P., Shaik M., Shankar L.G., Madamsetty S.P., Sena B., Channappa G., Siddaih A.M., Lella V.S.R., Didla R.B., Mohammad L.A., Jagarlamudi V.R., Avula V.G., Sundaram R.M.	Improvement of bacterial blight resistance of the popular variety, Nellore Mahsuri (NLR34449) through marker-assisted breeding.	J. Genet.	101		2022		
51160	35295630	Kawai T., Chen Y., Takahashi H., Inukai Y., Siddique K.H.M.	Rice Genotypes Express Compensatory Root Growth With Altered Root Distributions in Response to Root Cutting.	Front Plant Sci	13	830577	2022		
51161	35265092	Abdirad S., Ghaffari M.R., Majd A., Irian S., Soleymaniniya A., Daryani P., Koobaz P., Shobbar Z.S., Farsad L.K., Yazdanpanah P., Sadri A., Mirzaei M., Ghorbanzadeh Z., Kazemi M., Hadidi N., Haynes P.A., Salekdeh G.H.	Genome-Wide Expression Analysis of Root Tips in Contrasting Rice Genotypes Revealed Novel Candidate Genes for Water Stress Adaptation.	Front Plant Sci	13	792079	2022		
51162	35055947	Shah A.Z., Ma C., Zhang Y., Zhang Q., Xu G., Yang G.	Decoyinine Induced Resistance in Rice against Small Brown Planthopper <i>Laodelphax striatellus</i>.	Insects	13(1)		2022		
51163	35443012	Pinit S., Ruengchaijatuporn N., Sriswasdi S., Buaboocha T., Chadchawan S., Chaiwanon J.	Hyperspectral and genome-wide association analyses of leaf phosphorus status in local Thai indica rice.	PLoS ONE	17(4)	e0267304	2022		
51164	35391723	Zhou M., Li X., Liu X., Mi Y., Fu Z., Zhang R., Su H., Wei Y., Liu H., Wang F.	Effects of Antimony on Rice Growth and Its Existing Forms in Rice Under Arbuscular Mycorrhizal Fungi Environment.	Front Microbiol	13	814323	2022		
51165	35078247	Hou J., Zheng X., Ren R., Shi Q., Xiao H., Chen Z., Yue M., Wu Y., Hou H., Li L.	The Histone Deacetylase 1/ GSK3/SHAGGY-like Kinase 2/ BRASSINAZOLE RESISTANT 1 Module Controls lateral root Formation in Rice.	Plant Physiol.			2022		
51166	35062884	Pan X., Guan L., Lei K., Li J., Zhang X.	Transcriptional and physiological data revealed cold tolerance in a photo-thermo sensitive genic male sterile line Yu17S.	BMC Plant Biol.	22(1)	44	2022		
51167	35079684	Hu F.Q., Jiang S.C., Wang Z., Hu K., Xie Y.M., Zhou L., Zhu J.Q., Xing D.Y., Du B.	Seed priming with selenium: Effects on germination, seedling growth, biochemical attributes, and grain yield in rice growing under flooding conditions.	Plant Direct	6(1)	e378	2022		
51168	35215088	Guo W., Li C., Zeng B., Li J., Wang Z., Ma S., Du L., Lan Y., Sun F., Lu C., Li S., Zhou Y., Wang Y., Zhou T.	Analyses on the Infection Process of Rice Virus and the Spatiotemporal Expression Pattern of Host Defense Genes Based on a Determined-Part Inoculation Approach.	Pathogens	11(2)		2022		
51169	34985645	Sai C.B., Chidambaranathan P., Samantaray S.	Role of histone deacetylase inhibitors in androgenic callus induction of Oryza sativa sub indica, in sight into evolution and mode of action of histone deacetylase genes.	Mol. Biol. Rep.	49(3)	2169-2183	2022		
51170	35356124	Beerelli K., Balakrishnan D., Addanki K.R., Surapaneni M., Rao Yadavalli V., Neelamraju S.	Mapping of QTLs for Yield Traits Using F2:3:4 Populations Derived From Two Alien Introgression Lines Reveals <i>qTGW8.1</i> as a Consistent QTL for grain weight From <i>Oryza nivara</i>.	Front Plant Sci	13	790221	2022		
51171	35432414	Feng Y., Han Y., Han B., Zhao Y., Yang Y., Xing Y.	A 4 bp InDel in the Promoter of Wheat Gene <i>TaAFP-B</i> Affecting seed dormancy Confirmed in Transgenic Rice.	Front Plant Sci	13	837805	2022		
51172	35425761	Yi W., Chen C., Gan X.	Active Metabolites From the Endophyte <i>Paenibacillus polymyxa</i> Y-1 of <i>Dendrobium nobile</i> for the Control of Rice Bacterial Diseases.	Front Chem	10	879724	2022		
51173	35092312	Kumar G., Basu S., Singla-Pareek SL., Pareek A.	Unraveling the contribution of OsSOS2 in conferring salinity and drought tolerance in a high-yielding rice.	Physiol Plant	174(1)	e13638	2022		
51174	34747472	Yeh S.Y., Lin H.H., Chang Y.M., Chang Y.L., Chang C.K., Huang Y.C., Ho Y.W., Lin C.Y., Zheng J.Z., Jane W.N., Ng C.Y., Lu M.Y., Lai I.L., To K.Y., Li W.H., Ku M.S.B.	Maize Golden2-like transcription factors boost rice chloroplast development, photosynthesis, and grain yield.	Plant Physiol.	188(1)	442-459	2022		
51175	35036423	Tomita M., Tokuyama R., Matsumoto S., Ishii K.	Whole-Genome Sequencing Revealed a Late-Maturing Isogenic Rice Koshihikari Integrated with <i>Hd16</i> Gene Derived from an Ise Shrine Mutant.	International Journal of Genomics	2022	4565977	2022		
51176	35024991	Fan J., Hua H., Luo Z., Zhang Q., Chen M., Gong J., Wei X., Huang Z., Huang X., Wang Q.	Whole-Genome Sequencing of 117 Chromosome Segment Substitution Lines for Genetic Analyses of Complex Traits in Rice.	Rice (N Y)	15(1)	5	2022		
51177	35204699	Hwang O.J., Back K.	Exogenous Gibberellin Treatment Enhances Melatonin Synthesis for Melatonin-Enriched Rice Production.	Biomolecules	12(2)		2022		
51178	34978355	Alpuerto J.B., Fukuda M., Li S., Hussain R.M.F., Sakane K., Fukao T.	The submergence tolerance regulator SUB1A differentially coordinates molecular adaptation to submergence in mature and growing leaves of rice (Oryza sativa L.).	Plant J.	110(1)	71-87	2022		
51179	35078978	Das D., Paries M., Hobecker K., Gigl M., Dawid C., Lam H.M., Zhang J., Chen M., Gutjahr C.	PHOSPHATE STARVATION RESPONSE transcription factors enable arbuscular mycorrhiza symbiosis.	Nat Commun	13(1)	477	2022		
51180	35154213	Xie W., Li X., Wang S., Yuan M.	<i>OsWRKY53</i> Promotes Abscisic Acid Accumulation to Accelerate leaf senescence and Inhibit Seed Germination by Downregulating Abscisic Acid Catabolic Genes in Rice.	Front Plant Sci	12	816156	2021		
51181	35054940	Xu C., Luo M., Sun X., Yan J., Shi H., Yan H., Yan R., Wang S., Tang W., Zhou Y., Wang C., Xu Z., Chen J., Ma Y., Jiang Q., Chen M., Sun D.	<i>SiMYB19</i> from Foxtail Millet (<i>Setaria italica</i>) Confers Transgenic Rice Tolerance to High Salt Stress in the Field.	Int J Mol Sci	23(2)		2022		
51182	34845826	Zhang S., Deng L., Cheng R., Hu J., Wu C.Y.	RID1 sets rice heading date by balancing its binding with SLR1 and SDG722.	J Integr Plant Biol	64(1)	149-165	2022		
51183	35056849	Beaino S., El Hage P., Sonnier R., Seif S., El Hage R.	Novel Foaming-Agent Free Insulating Geopolymer Based on Industrial Fly Ash and Rice Husk.	Molecules	27(2)		2022		
51184	35221310	Korinsak S., Wongsaprom C., Jamboonsri W., Sriprakhon S., Sirithunya K., Vanavichit A., Toojinda T.	Identification of broad-spectrum resistance QTLs against rice blast fungus and their application in different rice genetic backgrounds.	J. Genet.	101		2022		
51185	35087553	Lu Y., Zeng J., Liu Q.	The Rice miR396-GRF-GIF-SWI/SNF Module: A Player in GA Signaling.	Front Plant Sci	12	786641	2021		
51186	35145535	Gao C., Zhu X., Lu S., Xu J., Zhou R., Lv J., Chen Y., Cao Y.	Functional Analysis of <i>OsCIPK17</i> in Rice Grain Filling.	Front Plant Sci	12	808312	2021		
51187	35039948	Li Y., Fang Y., Peng C., Hua X., Zhang Y., Qi X., Li Z., Wang Y., Hu L., Xu W.	Transgenic expression of rice OsPHR2 increases phosphorus uptake and yield in wheat.	Protoplasma			2022		
51188	35046975	Biswal A.K., Wu T.Y., Urano D., Pelissier R., Morel J.B., Jones A.M., Biswal A.K.	Novel Mutant Alleles Reveal a Role of the Extra-Large G Protein in Rice Grain Filling, Panicle Architecture, Plant Growth, and disease resistance.	Front Plant Sci	12	782960	2021	PXLG2,PXLG1,PXLG4,PXLG3	OsPXLG2, XLG2, OsXLG2,OsPXLG1, XLG1, OsXLG1,OsPXLG4, XLG3, OsXLG3,OsPXLG3, XLG4, OsXLG4
51189	35067774	Tiwari M., Gautam N., Indoliya Y., Kidwai M., Mishra A.K., Chakrabarty D.	A tau class GST, OsGSTU5, interacts with VirE2 and modulates the Agrobacterium-mediated transformation in rice.	Plant Cell Rep.	41(4)	873-891	2022		
51190	34905187	Huang Y., Li Y.	Microscale Thermophoresis Assay: A Powerful Method to Quantify Protein-Nucleic Acid and Protein-Protein Interactions.	Methods Mol. Biol.	2400	21-31	2022		
51191	35055928	Lai C., Hou Y., Hao P., Pang K., Yu X.	Detection of Yeast-like Symbionts in Brown Planthopper Reared on Different Resistant Rice Varieties Combining DGGE and Absolute Quantitative Real-Time PCR.	Insects	13(1)		2022		
51192	35044566	Yu X., Zhu Y., Xie Y., Li L., Jin Z., Shi Y., Luo C., Wei Y., Cai Q., He W., Zheng Y., Xie H., Zhang J.	Ubiquitylomes and proteomes analyses provide a new interpretation of the molecular mechanisms of rice leaf senescence.	Planta	255(2)	43	2022		
51193	35066006	Guo Z.H., Lung S.C., Fadhli Hamdan M., Chye M.L.	Interactions between plant lipid-binding proteins and their ligands.	Prog. Lipid Res.	86	101156	2022		
51194	34662408	Gao X., Zhang J., Cai G., Du H., Li J., Wang R., Wang Y., Yin J., Zhang W., Zhang H., Huang J.	qGL3/OsPPKL1 induces phosphorylation of 14-3-3 protein OsGF14b to inhibit OsBZR1 function in brassinosteroid signaling.	Plant Physiol.	188(1)	624-636	2022		
51195	35099666	Nakamura Y., Kubo A., Ono M., Yashiro K., Matsuba G., Wang Y., Matsubara A., Mizutani G., Matsuki J., Kainuma K.	Changes in fine structure of amylopectin and internal structures of starch granules in developing endosperms and culms caused by starch branching enzyme mutations of japonica rice.	Plant Mol. Biol.	108(4-5)	481-496	2022		
51196	35444674	Mangel N., Fudge J.B., Gruissem W., Fitzpatrick T.B., Vanderschuren H.	Natural Variation in Vitamin B1 and Vitamin B6 Contents in Rice Germplasm.	Front Plant Sci	13	856880	2022		
51197	35193744	Jiang D., Zhang H., Cai H., Gao Z., Chen G.	Overexpression of ZmPCK2, a Phosphoenolpyruvate carboxykinase gene from maize confers enhanced tolerance to water deficit stress in rice.	Plant Sci.	317	111195	2022		
51198	35054782	Li R., Yang R., Zheng W., Wu L., Zhang C., Zhang H.	Melatonin Promotes SGT1-Involved Signals to Ameliorate Drought Stress Adaption in Rice.	Int J Mol Sci	23(2)		2022		
51199	34984696	Yang G., Peng Y., Liu R., Huang M., Xiao Y., Yang Z., Sun Y., Hu Y., Chen H., Ma J.	Effect of chemical fertilizer reduction on the quality of hybrid rice of different amylose contents.	J. Food Biochem.	46(2)	e14066	2022		
51200	35032687	Zhao Y., Cao X., Zhong W., Zhou S., Li Z., An H., Liu X., Wu R., Bohora S., Wu Y., Liang Z., Chen J., Yang X., Zhou G., Zhang T.	A viral protein orchestrates rice ethylene signaling to coordinate viral infection and insect vector-mediated transmission.	Mol Plant	15(4)	689-705	2022		
51201	34994516	Habila S., Khunpolwattana N., Chantarachot T., Buaboocha T., Comai L., Chadchawan S., Pongpanich M.	Salt stress responses and SNP-based phylogenetic analysis of Thai rice cultivars.	Plant Genome	15(1)	e20189	2022		
51202	35330871	Liu C., Cui D., Jiao A., Ma X., Li X., Han B., Chen H., Ruan R., Wang Y., Han L.	Kam Sweet Rice (<i>Oryza sativa</i> L.) Is a Special Ecotypic Rice in Southeast Guizhou, China as Revealed by Genetic Diversity Analysis.	Front Plant Sci	13	830556	2022		
51203	35065667	Wang C., Caragea D., Kodadinne Narayana N., Hein N.T., Bheemanahalli R., Somayanda I.M., Jagadish S.V.K.	Deep learning based high-throughput phenotyping of chalkiness in rice exposed to high night temperature.	Plant Methods	18(1)	9	2022		
51204	35126429	Xue P., Chen Y.Y., Wen X.X., Wang B.F., Yang Q.Q., Gong K., Kang Y.W., Sun L.P., Yu P., Cao L.Y., Zhang Y.X., Zhan X.D., Cheng S.H.	Dissection of Closely Linked Quantitative Trait Locis Controlling grain size.in Rice.	Front Plant Sci	12	804444	2021		
51205	35350241	Zou M., Jiang S., Wang F., Zhao L., Zhang C., Bao Y., Chen Y., Xia Z.	Feature Compression Applications of Genetic Algorithm.	Front Genet	13	757524	2022		
51206	35041992	Liu W., Sun J., Li J., Liu C., Si F., Yan B., Wang Z., Song X., Yang Y., Zhu Y., Cao X.	Reproductive tissue-specific translatome of a rice thermo-sensitive genic male sterile line.	J Genet Genomics			2022		
51207	35060090	da Silva MSRA., Tavares O.C.H., de Oliveira ISR., da Silva CSRA., da Silva CSRA., Vidal M.S., Baldani V.L.D., Jesus E.D.C.	Stimulatory effects of defective and effective 3-indoleacetic acid-producing bacterial strains on rice in an advanced stage of its vegetative cycle.	Braz. J. Microbiol.	53(1)	281-288	2022		
51208	35265102	Li S., Li S., Su S., Zhang H., Shen J., Wen Y.	Gene Region Association Analysis of Longitudinal Quantitative Traits Based on a Function-On-Function Regression Model.	Front Genet	13	781740	2022		
51209	35265093	Guo C., Chen L., Cui Y., Tang M., Guo Y., Yi Y., Li Y., Liu L., Chen L.	RNA Binding Protein OsTZF7 Traffics Between the Nucleus and Processing Bodies/Stress Granules and Positively Regulates Drought Stress in Rice.	Front Plant Sci	13	802337	2022		
51210	34997897	Phillips A.L., Scafaro A.P., Atwell B.J.	Photosynthetic traits of Australian wild rice (Oryza australiensis) confer tolerance to extreme daytime temperatures.	Plant Mol. Biol.			2022		
51211	35093593	Huang W., Zhang L., Columbus J.T., Hu Y., Zhao Y., Tang L., Guo Z., Chen W., McKain M., Bartlett M., Huang C.H., Li D.Z., Ge S., Ma H.	A well-supported nuclear phylogeny of Poaceae and implications for the evolution of C4 photosynthesis.	Mol Plant	15(4)	755-777	2022		
51212	35432400	Deng J., Harrison M.T., Liu K., Ye J., Xiong X., Fahad S., Huang L., Tian X., Zhang Y.	Integrated Crop Management Practices Improve grain yield and Resource Use Efficiency of Super Hybrid Rice.	Front Plant Sci	13	851562	2022		
51213	35084591	Singh A., Banerjee A., Roychoudhury A.	Fluoride tolerance in rice is negatively regulated by the 'stress-phytohormone' abscisic acid (ABA), but promoted by ABA-antagonist growth regulators, melatonin, and gibberellic acid.	Protoplasma			2022		
51214	35187294	Jin B., Zhang C., Jia L., Tang Q., Gao L., Zhao G., Qi H.	Identification of Rice Seed Varieties Based on Near-Infrared Hyperspectral Imaging Technology Combined with Deep Learning.	ACS Omega	7(6)	4735-4749	2022		
51215	35098404	Ishimaru T., Parween S., Saito Y., Masumura T., Kondo M., Sreenivasulu N.	Laser microdissection transcriptome data derived gene regulatory networks of developing rice endosperm revealed tissue- and stage-specific regulators modulating starch metabolism.	Plant Mol. Biol.	108(4-5)	443-467	2022		
51216	35162989	Meng B., Wang T., Luo Y., Guo Y., Xu D., Liu C., Zou J., Li L., Diao Y., Gao Z., Hu Z., Zheng X.	Identification and Allele Combination Analysis of Rice grain shape-Related Genes by Genome-Wide Association Study.	Int J Mol Sci	23(3)		2022		
51217	35127308	Kumar V., Singh P.K., Karkute S.G., Tasleem M., Bhagat S., Abdin M.Z., Sevanthi A.M., Rai A., Sharma T.R., Singh N.K., Solanke A.U.	Identification of novel resources for panicle blast resistance from wild rice accessions and mutants of cv. Nagina 22 by syringe inoculation under field conditions.	3 Biotech	12(2)	53	2022		
51218	35242291	Yang L., Zhao M., Sha G., Sun Q., Gong Q., Yang Q., Xie K., Yuan M., Mortimer J.C., Xie W., Wei T., Kang Z., Li G.	The genome of the rice variety LTH provides insight into its universal susceptibility mechanism to worldwide rice blast fungal strains.	Comput Struct Biotechnol J	20	1012-1026	2022		
51219	35126422	Bund? M., Mart?n-Cardoso H., Pesenti M., G?mez-Ariza J., Castillo L., Frouin J., Serrat X., Nogu?s S., Courtois B., Grenier C., Sacchi G.A., San Segundo B.	Integrative Approach for Precise Genotyping and Transcriptomics of Salt Tolerant Introgression Rice Lines.	Front Plant Sci	12	797141	2021		
51220	35142135	Sun P., Zhang W., Shu F., He Q., Zhang L., Yang Z., Peng Z., Xie Y., Deng H.	[Comprehensive evaluation of salt-alkali tolerance of rice germplasms at germination and seedling stages and analysis of salt-tolerant genes].	Sheng Wu Gong Cheng Xue Bao	38(1)	252-263	2022		
51221	35083510	Zhang Q., Liu G., Jin J., Liang J., Zhang J., Peng H., Wang W., Zhang Z.	RIP2 interacts with REL1 to control leaf architecture by modulating brassinosteroid signaling in rice.	Theor. Appl. Genet.	135(3)	979-991	2022		
51222	35025032	Rasheed H., Fiaz S., Khan M.A., Mehmood S., Ullah F., Saeed S., Khan S.U., Yaseen T., Hussain R.M., Qayyum A.	Characterization of functional genes GS3 and GW2 and their effect on the grain size.of various landraces of rice (Oryza sativa).	Mol. Biol. Rep.			2022		
51223	34982277	Liu X., Ding Q., Wang W., Pan Y., Tan C., Qiu Y., Chen Y., Li H., Li Y., Ye N., Xu N., Wu X., Ye R., Liu J., Ma C.	Targeted Deletion of the First Intron of the Wxb Allele via CRISPR/Cas9 Significantly Increases Grain amylose content in Rice.	Rice (N Y)	15(1)	1	2022		
51224	35360329	Sun M., Qiu L., Liu Y., Zhang H., Zhang Y., Qin Y., Mao Y., Zhou M., Du X., Qin Z., Dai S.	Pto Interaction Proteins: Critical Regulators in Plant Development and Stress Response.	Front Plant Sci	13	774229	2022	RLCK33,PDK1,RAR1,RLCK178,OXI1	OsPti1b, Pti1b, OsRLCK33,OsPdk1, Pdk1, OsAGC3, AGC3,Os RAR1, OsRAR1,OsPti1a, Pti1a, OsRLCK178,OsOxi1, OsAGC10, AGC10
51225	35099818	Nazir R., Mandal S., Mitra S., Ghorai M., Das N., Jha N.K., Majumder M., Pandey D.K., Dey A.	CRISPR/Cas genome-editing toolkit to enhance salt stress tolerance in rice and wheat.	Physiol Plant		e13642	2022		
51226	35053124	Zhang X., Yang F., Ma H., Li J.	Evaluation of the Saline-Alkaline Tolerance of Rice (<i>Oryza sativa</i> L.) Mutants Induced by Heavy-Ion Beam Mutagenesis.	Biology (Basel)	11(1)		2022		
51227	35163510	Tan J., Wang Y., Chen S., Lin Z., Zhao Y., Xue Y., Luo Y., Liu Y.G., Zhu Q.	An Efficient Marker Gene Excision Strategy Based on CRISPR/Cas9-Mediated Homology-Directed Repair in Rice.	Int J Mol Sci	23(3)		2022		
51228	35057906	Basit F., Ulhassan Z., Mou Q., Nazir M.M., Hu J., Hu W., Song W., Sheteiwy M.S., Zhou W., Bhat J.A., Jeddi K., Hessini K., Guan Y.	Seed priming with nitric oxide and/or spermine mitigate the chromium toxicity in rice (Oryza sativa) seedlings by improving the carbon-assimilation and minimising the oxidative damages.	Funct. Plant Biol.			2022		
51229	35006368	Lo K.L., Chen Y.N., Chiang M.Y., Chen M.C., Panibe J.P., Chiu C.C., Liu L.W., Chen L.J., Chen C.W., Li W.H., Wang C.S.	Two genomic regions of a sodium azide induced rice mutant confer broad-spectrum and durable resistance to blast disease.	Rice (N Y)	15(1)	2	2022		
51230	35017643	Yan N., Yang T., Yu X.T., Shang L.G., Guo D.P., Zhang Y., Meng L., Qi Q.Q., Li Y.L., Du Y.M., Liu X.M., Yuan X.L., Qin P., Qiu J., Qian Q., Zhang Z.F.	Chromosome-level genome assembly of Zizania latifolia provides insights into its seed shattering and phytocassane biosynthesis.	Commun Biol	5(1)	36	2022		
51231	35069619	Tao Y., Mohi Ud Din A., An L., Chen H., Li G., Ding Y., Liu Z.	Metabolic Disturbance Induced by the Embryo Contributes to the Formation of chalky endosperm of a Notched-Belly Rice Mutant.	Front Plant Sci	12	760597	2021		
51232	35205255	Kim M.S., Yu J.K., Ko S.R., Kim K.J., Ji H., Kang K.K., Cho Y.G.	Marker-Assisted Backcrossing (MABc) to Improve Eating Quality with Thin seed coat and aleurone layer of Non-Glutinous Japonica Variety in Rice.	Genes (Basel)	13(2)		2022		
51233	35422832	Zhang C., Wang J., Xiao X., Wang D., Yuan Z., Zhang X., Sun W., Yu S.	Fine Mapping of Two Interacting Loci for Transmission Ratio Distortion in Rice (<i>Oryza sativa</i> L.).	Front Plant Sci	13	866276	2022		
51234	35161248	Gaballah M.M., Attia K.A., Ghoneim A.M., Khan N., El-Ezz AF., Yang B., Xiao L., Ibrahim E.I., Al-Doss AA.	Assessment of Genetic Parameters and Gene Action Associated with Heterosis for Enhancing Yield Characters in Novel Hybrid Rice Parental Lines.	Plants (Basel)	11(3)		2022		
51235	35069617	Dwivedi P., Ramawat N., Raju D., Dhawan G., Gopala Krishnan S., Chinnusamy V., Bhowmick P.K., Vinod K.K., Pal M., Nagarajan M., Ellur R.K., Bollinedi H., Singh A.K.	Drought Tolerant Near Isogenic Lines of Pusa 44 Pyramided With <i>qDTY2.1</i> and <i>qDTY3.1</i>, Show Accelerated Recovery Response in a High Throughput Phenomics Based Phenotyping.	Front Plant Sci	12	752730	2021		
51236	35043531	Paleari L., Li T., Yang Y., Wilson L.T., Hasegawa T., Boote K.J., Buis S., Hoogenboom G., Gao Y., Movedi E., Ruget F., Singh U., St?ckle CO., Tang L., Wallach D., Zhu Y., Confalonieri R.	A trait-based model ensemble approach to design rice plant types for future climate.	Glob Chang Biol	28(8)	2689-2710	2022		
51237	35059629	Haq F., Xu X., Ma W., Shah S.M.A., Liu L., Zhu B., Zou L., Chen G.	A <i>Xanthomonas</i> transcription activator-like effector is trapped in nonhost plants for immunity.	Plant Commun	3(1)	100249	2022		
51238	34534340	Ma X., Yan H., Yang J., Liu Y., Li Z., Sheng M., Cao Y., Yu X., Yi X., Xu W., Su Z.	PlantGSAD: a comprehensive gene set annotation database for plant species.	Nucleic Acids Res.	50(D1)	D1456-D1467	2022		
51239	34905186	Xu K., Li Y.	Developing Rice Mutants Using CRISPR/Cas9-Based Genome Editing Technology.	Methods Mol. Biol.	2400	11-19	2022		
51240	35449886	Liang D., Qi Z., Du Y., Yu J., Yu M., Zhang R., Cao H., Pan X., Qiao J., Song T., Liu Y., Chen Z., Liu Y.	Identification of Differentially Expressed Genes Reveal Conserved Mechanisms in the Rice-<i>Magnaporthe oryzae</i> Interaction.	Front Plant Sci	13	723356	2022	USP3,USP17,OHP1,LHCA5,USP30,CABE,PSB33	OsUSP3, OsUSP5, USP5,OsUSP17, OsUSP3, USP3,OsOHP1,OsLhca5,OsUSP, USP, OsUSP30, OsUSP4, USP4,CabE, OsCabE, OsLhcb7, Lhcb7,OsPsb33
51241	35401589	Dash M., Somvanshi V.S., Godwin J., Budhwar R., Sreevathsa R., Rao U.	Exploring Genomic Variations in Nematode-Resistant Mutant Rice Lines.	Front Plant Sci	13	823372	2022		
51242	35103045	Chen D.G., Zhou X.Q., Chen K., Chen P.L., Guo J., Liu C.G., Chen Y.D.	Fine-mapping and candidate gene analysis of a major locus controlling leaf thickness in rice (<i>Oryza sativa</i> L.).	Mol. Breed.	42(2)	6	2022		
51243	35079011	Yang H., Li Y., Cao Y., Shi W., Xie E., Mu N., Du G., Shen Y., Tang D., Cheng Z.	Nitrogen nutrition contributes to plant fertility by affecting meiosis initiation.	Nat Commun	13(1)	485	2022	ETFBETA,MEL1,ETFALPHA,IVD,D-LDH2,RAD21,ETFQO	ETFbeta, OsETFbeta,mel1, OsMEL1, MEAL1, OsMEAL1, OsAGO5c ,ETFalpha, OsETFalpha,OsIVD, IVDH, OsIVDH,OsD-LDH2, D2HGDH, OsD2HGDH,OsRad21, OsRAD21-1, REC8,OsETFQO
51244	34742166	Wu Z., Zhang X., Chang G., Yang J., Wan J., Wang F., Tao D., Zhou J., Shang L., Xu P., Yu D.	Natural alleles of a uridine 5'-diphospho-glucosyltransferase gene responsible for differential endosperm development between upland rice and paddy rice.	J Integr Plant Biol	64(1)	135-148	2022	EDR1	OsUGT84D1, UGT84D1, OsEDR1
51245	35281128	Yang H., Li P., Jin G., Gui D., Liu L., Zhang C.	Temporal regulation of alternative splicing events in rice memory under drought stress.	Plant Divers	44(1)	116-125	2022		
51246	35077963	Li H., Xu M., Yao X., Wen Y., Lu S., Wang J., Sun B.	The promoted hydrolysis effect of cellulase with ultrasound treatment is reflected on the sonicated rather than native brown rice.	Ultrason Sonochem	83	105920	2022		
51247	35154278	Hussain I., Ali S., Liu W., Awais M., Li J., Liao Y., Zhu M., Fu C., Liu D., Wang F.	Identification of Heterotic Groups and Patterns Based on Genotypic and Phenotypic Characteristics Among Rice Accessions of Diverse Origins.	Front Genet	13	811124	2022		
51248	35075121	Yugandhar P., Veronica N., Subrahmanyam D., Brajendra P., Nagalakshmi S., Srivastava A., Voleti S.R., Sarla N., Sundaram R.M., Sevanthi A.M., Singh A.K., Mangrauthia S.K.	Revealing the effect of seed phosphorus concentration on seedling vigour and growth of rice using mutagenesis approach.	Sci Rep	12(1)	1203	2022		
51249	35251109	Wang L., Liu H., Yin Z., Li Y., Lu C., Wang Q., Ding X.	A Novel Guanine Elicitor Stimulates Immunity in <i>Arabidopsis</i> and Rice by Ethylene and Jasmonic Acid Signaling Pathways.	Front Plant Sci	13	841228	2022		
51250	35052448	Deng Q., Dai L., Chen Y., Wu D., Shen Y., Xie J., Luo X.	Identification of Phosphorus Stress Related Proteins in the Seedlings of Dongxiang Wild Rice (<i>Oryza Rufipogon</i> Griff.) Using Label-Free Quantitative Proteomic Analysis.	Genes (Basel)	13(1)		2022		
51251	35006475	Figueroa C.M., Asencion Diez MD., Ballicora M.A., Iglesias A.A.	Structure, function, and evolution of plant ADP-glucose pyrophosphorylase.	Plant Mol. Biol.	108(4-5)	307-323	2022		
51252	35400893	Bharali A., Baruah K.K.	Effects of integrated nutrient management on sucrose phosphate synthase enzyme activity and grain quality traits in rice.	Physiol Mol Biol Plants	28(2)	383-389	2022		
51253	35141925	Ajmera I., Henry A., Radanielson A.M., Klein S.P., Ianevski A., Bennett M.J., Band L.R., Lynch J.P.	Integrated root phenotypes for improved rice performance under low nitrogen availability.	Plant Cell Environ.	45(3)	805-822	2022		
51254	35216499	Yuan L., Zhang L., Wei X., Wang R., Li N., Chen G., Fan F., Huang S., Li J., Li S.	Quantitative Trait Locus Mapping of salt tolerance in Wild Rice <i>Oryza longistaminata</i>.	Int J Mol Sci	23(4)		2022		
51255	35330100	Elsharkawy M.M., Sakran R.M., Ahmad A.A., Behiry S.I., Abdelkhalek A., Hassan M.M., Khedr A.A.	Induction of Systemic Resistance against Sheath Blight in Rice by Different <i>Pseudomonas</i> Isolates.	Life (Basel)	12(3)		2022		
51256	35251058	Kantharaj V., Ramasamy N.K., Yoon Y.E., Cheong M.S., Kim Y.N., Lee K.A., Kumar V., Choe H., Kim S.Y., Chohra H., Lee Y.B.	Auxin-Glucose Conjugation Protects the Rice (<i>Oryza sativa</i> L.) Seedlings Against Hydroxyurea-Induced Phytotoxicity by Activating UDP-Glucosyltransferase Enzyme.	Front Plant Sci	12	767044	2021		
51257	35270092	Badri J., Lakshmidevi G., JaiVidhya LRK., Prasad M.S., Laha G.S., Lakshmi V.J., Isetty S.R., Padmashree R., Balakrishnan D., Varanasi Y.V.P., Jukanti A.K., Singh U.M., Singh V.K., Kumar A., Ram T., Subba Rao LV., Sundaram R.M.	Multiparent-Derived, Marker-Assisted Introgression Lines of the Elite Indian Rice Cultivar, 'Krishna Hamsa' Show Resistance against Bacterial Blight and Blast and Tolerance to Drought.	Plants (Basel)	11(5)		2022		
51258	35098547	Park J.C., Yoo Y., Lim H., Yun S., Win KTYS., Kim K.M., Lee G.S., Cho M.H., Lee T.H., Sano H., Lee S.W.	Intracellular Ca2+ accumulation triggered by caffeine provokes resistance against a broad range of biotic stress in rice.	Plant Cell Environ.	45(4)	1049-1064	2022		
51259	35216200	Wang Y., Zhang Y., An Y., Wu J., He S., Sun L., Hao F.	Wheat <i>TaTIP4;1</i> Confers Enhanced Tolerance to Drought, Salt and Osmotic Stress in <i>Arabidopsis</i> and Rice.	Int J Mol Sci	23(4)		2022		
51260	35400880	Anik T.R., Nihad S.A.I., Hasan M.A., Hossain M.A., Rashid M.M., Khan M.A.I., Halder K.P., Latif M.A.	Exploring of bacterial blight resistance in landraces and mining of resistant gene(s) using molecular markers and pathogenicity approach.	Physiol Mol Biol Plants	28(2)	455-469	2022		
51261	35185949	Matiz-Ceron L., Reyes A., Anzola J.	Taxonomical Evaluation of Plant Chloroplastic Markers by Bayesian Classifier.	Front Plant Sci	12	782663	2021		
51262	35217680	Gong G., Yuan L.Y., Li Y.F., Xiao H.X., Li Y.F., Zhang Y., Wu W.J., Zhang Z.F.	Salivary protein 7 of the brown planthopper functions as an effector for mediating tricin metabolism in rice plants.	Sci Rep	12(1)	3205	2022		
51263	35251059	Siddiqui Z.S., Wei X., Umar M., Abideen Z., Zulfiqar F., Chen J., Hanif A., Dawar S., Dias D.A., Yasmeen R.	Scrutinizing the Application of Saline Endophyte to Enhance salt tolerance in Rice and Maize Plants.	Front Plant Sci	12	770084	2021		
51264	35166848	Melandri G., Monteverde E., Riewe D., AbdElgawad H., McCouch S.R., Bouwmeester H.	Can biochemical traits bridge the gap between genomics and plant performance? A study in rice under drought.	Plant Physiol.			2022		
51265	35139229	Xiong M., Yu J., Wang J., Gao Q., Huang L., Chen C., Zhang C., Fan X., Zhao D., Liu Q.Q., Li Q.F.	Brassinosteroids regulate rice seed germination through the BZR1-RAmy3D transcriptional module.	Plant Physiol.			2022		
51266	35182790	Huang H., Ye Y., Song W., Li Q., Han R., Wu C., Wang S., Yu J., Liu X., Fu X., Liu Q., Wu K.	Modulating the C-terminus of DEP1 synergistically enhances grain quality and yield in rice.	J Genet Genomics			2022		
51267	35143725	Zhang Z., Tappiban P., Ying Y., Hu Y., Bao J.	Functional Interactions between Enzymes Involved in Amylose and Amylopectin Biosynthesis in Rice Based on Mathematical Models.	Biomacromolecules	23(3)	1443-1452	2022		
51268	35176996	Li H., Li X., Wang G., Zhang J., Wang G.	Analysis of gene expression in early seed germination of rice: landscape and genetic regulation.	BMC Plant Biol.	22(1)	70	2022		
51269	35226488	Wu J., Zheng Y., Xu C., Jiao Q., Ye C., Chen T., Yu X., Pang K., Hao P.	Rice Defense against Brown Planthopper Partially by Suppressing the Expression of Transferrin Family Genes of Brown Planthopper.	J. Agric. Food Chem.	70(9)	2839-2850	2022		
51270	34865135	Kusnandar A.S., Itoh J.I., Sato Y., Honda E., Hibara K.I., Kyozuka J., Naramoto S.	NARROW AND DWARF LEAF 1, the Ortholog of Arabidopsis ENHANCER OF SHOOT REGENERATION1/DORNR?SCHEN, Mediates Leaf Development and Maintenance of the shoot apical meristem in Oryza sativa L.	Plant Cell Physiol.	63(2)	265-278	2022	NDL1	ERF79, OsERF#079, OsERF079, OsERF79, AP2/EREBP#017, AP2/EREBP17, OsNDL1, DSP, OsDSP
51271	35120438	Hartmann A., Berkowitz O., Whelan J., Narsai R.	Cross-species transcriptomic analyses reveals common and opposite responses in Arabidopsis, rice and barley following oxidative stress and hormone treatment.	BMC Plant Biol.	22(1)	62	2022		
51272	35112363	Ozaki H., Takagi D., Mizokami Y., Tokida T., Nakamura H., Sakai H., Hasegawa T., Noguchi K.	Low N level increases the susceptibility of PSI to photoinhibition induced by short repetitive flashes in leaves of different rice varieties.	Physiol Plant		e13644	2022		
51273	35165965	Kong W., Deng X., Yang J., Zhang C., Sun T., Ji W., Zhong H., Fu X., Li Y.	High-resolution bin-based linkage mapping uncovers the genetic architecture and heterosis-related loci of plant height in indica-japonica derived populations.	Plant J.			2022		
51274	35214835	Nahar L., Aycan M., Hanamata S., Baslam M., Mitsui T.	Impact of Single and Combined Salinity and High-Temperature Stresses on Agro-Physiological, Biochemical, and Transcriptional Responses in Rice and Stress-Release.	Plants (Basel)	11(4)		2022		
51275	35189403	Yang W., Xu P., Zhang J., Zhang S., Li Z., Yang K., Chang X., Li Y.	OsbZIP60-mediated unfolded protein response regulates grain chalkiness in rice.	J Genet Genomics			2022		
51276	35150566	Becker S., M?cke S., Grau J., Boch J.	Flexible TALEs for an expanded use in gene activation, virulence?and scaffold engineering.	Nucleic Acids Res.	50(4)	2387-2400	2022		
51277	35216210	Li L., Shi F., Wang G., Guan Y., Zhang Y., Chen M., Chang J., Yang G., He G., Wang Y., Li Y.	Conservation and Divergence of <i>SQUAMOSA-PROMOTER BINDING PROTEIN-LIKE</i> (<i>SPL</i>) Gene Family between Wheat and Rice.	Int J Mol Sci	23(4)		2022		
51278	35149441	Cai Y., Chen H., Xiao N., Wu Y., Yu L., Chen Z., Liu J., Shi W., Pan C., Li Y., Zhou C., Ji H., Huang N., Zhang X., Zhang Y., Li A.	Substandard starch grain4 may function in amyloplast development by influencing starch and lipid metabolism in rice endosperm.	J. Plant Physiol.	270	153638	2022		
51279	35201538	P?rez L., Alves R., Perez-Fons L., Albacete A., Farr? G., Soto E., Vilapriny? E., Mart?nez-And?jar C., Basallo O., Fraser P.D., Medina V., Zhu C., Capell T., Christou P.	Multilevel interactions between native and ectopic isoprenoid pathways affect global metabolism in rice.	Transgenic Res.	31(2)	249-268	2022		
51280	35214855	Jiang Y., Ren Y., Xu X., Wang H., Wei C.	Application of Allele Specific PCR in Identifying Offspring Genotypes of Bi-Allelic <i>SbeIIb</i> Mutant Lines in Rice.	Plants (Basel)	11(4)		2022		
51281	35106849	Fan X., Liu J., Zhang Z., Xi Y., Li S., Xiong L., Xing Y.	A long transcript mutant of the Rubisco activase gene RCA upregulated by the transcription factor Ghd2 enhances drought tolerance in rice.	Plant J.			2022		
51282	35144028	Liu G., Jiang W., Tian L., Fu Y., Tan L., Zhu Z., Sun C., Liu F.	Polyamine oxidase 3 is involved in salt tolerance at the germination stage in rice.	J Genet Genomics			2022		
51283	35189299	Asgher M., Sehar Z., Rehaman A., Rashid S., Ahmed S., Per T.S., Alyemeni M.N., Khan N.A.	Exogenously-applied L-glutamic acid protects photosynthetic functions and enhances arsenic tolerance through increased nitrogen assimilation and antioxidant capacity in rice (Oryza sativa L.).	Environ. Pollut.	301	119008	2022		
51284	35179286	Han J., Ma K., Li H., Su J., Zhou L., Tang J., Zhang S., Hou Y., Chen L., Liu Y.G., Zhu Q.	All-in-one: a robust fluorescent fusion protein vector toolbox for protein localization and BiFC analyses in plants.	Plant Biotechnol. J.			2022		
51285	35040151	Chu C., Huang R., Liu L., Tang G., Xiao J., Yoo H., Yuan M.	The rice heavy-metal transporter OsNRAMP1 regulates disease resistance by modulating ROS homoeostasis.	Plant Cell Environ.	45(4)	1109-1126	2022		
51286	35170194	Wu X.X., Yuan P., Chen H., Kumar V., Kang S.M., Jia B., Xuan Y.H.	Ammonium transporter 1 increases rice resistance to sheath blight by promoting nitrogen assimilation and ethylene signalling.	Plant Biotechnol. J.			2022		
51287	35216209	Wang Y., Du F., Li Y., Wang J., Zhao X., Li Z., Xu J., Wang W., Fu B.	Global N6-Methyladenosine Profiling Revealed the Tissue-Specific Epitranscriptomic Regulation of Rice Responses to Salt Stress.	Int J Mol Sci	23(4)		2022		
51288	35180223	Jia Y., Qin C., Traw M.B., Chen X., He Y., Kai J., Yang S., Wang L., Hurst L.D.	In rice splice variants that restore the reading frame after frameshifting indel introduction are common, often induced by the indels and sometimes lead to organism-level rescue.	PLoS Genet.	18(2)	e1010071	2022		
51289	34791461	Fu L., Wu D., Zhang X., Xu Y., Kuang L., Cai S., Zhang G., Shen Q.	Vacuolar H+-pyrophosphatase HVP10 enhances salt tolerance via promoting Na+ translocation into root vacuoles.	Plant Physiol.	188(2)	1248-1263	2022		
51290	35216206	Solis C.A., Yong M.T., Zhou M., Venkataraman G., Shabala L., Holford P., Shabala S., Chen Z.H.	Evolutionary Significance of NHX Family and NHX1 in Salinity Stress Adaptation in the Genus <i>Oryza</i>.	Int J Mol Sci	23(4)		2022	NHX2,GPA6,SOS1,NHX6,NHX4,NHX1,NHX3	OsNHX2,OsNHX5, NHX5, OsGPA6,OsSOS1, OsNHA1, NHA1, SOS1/NHX7, NHX7, OsNHX7,OsSTA230, OsNHX6,OsNHX4,OsNHX1, OcNHX1, OgNHX1, OrNHX1, OpNHX1, ObNHX1,OsNHX3, OsNHX2, NHX2
51291	35231639	Chang L., Hu M., Ning J., He W., Gao J., Ndjiondjop M.N., Fu Y., Liu F., Sun H., Gu P., Sun C., Zhu Z.	The genetic control of glabrous glume during African rice domestication.	J Genet Genomics			2022		
51292	35139756	Singh P., Khan A., Kumar R., Ojha K.K., Singh V.K., Srivastava A.	<i>In silico</i> analysis of comparative affinity of phytosiderophore and bacillibactin for iron uptake by YSL15 and YSL18 receptors of <i>Oryza sativa</i>.	J. Biomol. Struct. Dyn.		1-14	2022		
51293	35067957	Feng T., Wang L., Li L., Liu Y., Chong K., Thei?en G., Meng Z.	OsMADS14 and NF-YB1 cooperate in the direct activation of OsAGPL2 and Waxy during starch synthesis in rice endosperm.	New Phytol.	234(1)	77-92	2022		
51294	35430061	Zhao Y., Li W., Sun L., Xu H., Su W., Xue F., Wu R., Lu C.	Transcriptome analysis and the identification of genes involved in the metabolic pathways of fenoxaprop-P-ethyl in rice treated with isoxadifen-ethyl hydrolysate.	Pestic Biochem Physiol	183	105057	2022		
51295	35198699	Sz?kely ?., Szal?ki T., Lantos C., Pauk J., Venkatanagappa S., Jancs? M.	Data of selected set of rice accessions at the germination stage under cold stress.	Data Brief	41	107929	2022		
51296	35326108	Choudhury S., Mazumder M.K., Moulick D., Sharma P., Tata S.K., Ghosh D., Ali H.M., Siddiqui M.H., Brestic M., Skalicky M., Hossain A.	A Computational Study of the Role of Secondary Metabolites for Mitigation of Acid Soil Stress in Cereals Using Dehydroascorbate and Mono-Dehydroascorbate Reductases.	Antioxidants (Basel)	11(3)		2022		
51297	35270067	Arif M.A.R., Afzal I., B?rner A.	Genetic Aspects and Molecular Causes of seed longevity in Plants-A Review.	Plants (Basel)	11(5)		2022		
51298	35119567	Lachaux M., Thomas E., Bogdanove A.J., Szurek B., Hutin M.	TAL Effectors with Avirulence Activity in African Strains of Xanthomonas oryzae pv. oryzae.	Rice (N Y)	15(1)	9	2022		
51299	35151907	Zhan P., Ma S., Xiao Z., Li F., Wei X., Lin S., Wang X., Ji Z., Fu Y., Pan J., Zhou M., Liu Y., Chang Z., Li L., Bu S., Liu Z., Zhu H., Liu G., Zhang G., Wang S.	Natural variations in grain length 10 (GL10) regulate rice grain size.	J Genet Genomics			2022		
51300	35136146	Susilawati P.N., Tajima R., Giamerti Y., Yang Y., Yufdy M.P., Lubis I., Homma K.	Application of consecutive polyethylene glycol treatments for modeling the seminal root growth of rice under water stress.	Sci Rep	12(1)	2096	2022		
51301	35166833	Zhao H., Wang Y., Lyu M.A., Zhu X.G.	Two Major Metabolic Factors for an Efficient NADP-Malate Enzyme Type C4 Photosynthesis.	Plant Physiol.			2022		
51302	35106860	Liu F., Chern M., Jain R., Martin J.A., Schakwitz W.S., Ronald P.C.	Silencing of Dicer-like protein 2a restores the resistance phenotype in the rice mutant, sxi4 (suppressor of Xa21-mediated immunity 4).	Plant J.			2022		
51303	35205198	Zhou L., Yuan Q., Ai X., Chen J., Lu Y., Yan F.	Transgenic Rice Plants Expressing Artificial miRNA Targeting the Rice Stripe Virus <i>MP</i> Gene Are Highly Resistant to the Virus.	Biology (Basel)	11(2)		2022		
51304	35171635	Tan M., Fang Y., Wu Y., Reardon R.C., Qiang S.	First report of Curvularia intermedia Boedijn causing leaf blight disease on Microstegium vimineum in China.	Plant Dis.			2022		
51305	35150800	Jiao L., Zhang L., Zhang Y., Wang R., Lu B., Liu X.	Transcriptome analysis provides new insight into the distribution and transport of selenium and its associated metals in selenium-rich rice.	Environ. Pollut.	301	118980	2022		
51306	35214876	Rajagopalan V.R., Manickam S., Muthurajan R.	A Comparative Metabolomic Analysis Reveals the Nutritional and Therapeutic Potential of Grains of the Traditional Rice Variety Mappillai Samba.	Plants (Basel)	11(4)		2022		
51307	35229068	Xiong E., Cao D., Qu C., Zhao P., Wu Z., Yin D., Zhao Q., Gong F.	Multilocation proteins in organelle communication: Based on protein-protein interactions.	Plant Direct	6(2)	e386	2022		
51308	35414758	Kawada K., Sasaki Y., Asami T., Yajima S., Ito S.	Insect growth regulators with hydrazide moiety inhibit strigolactone biosynthesis in rice.	Journal of Pesticide Science	47(1)	43-46	2022		
51309	35327963	Wang J., Zhang C., Li Y.	Genome-Wide Identification and Expression Profiles of 13 Key Structural Gene Families Involved in the Biosynthesis of Rice Flavonoid Scaffolds.	Genes (Basel)	13(3)		2022	LDOX9,ANR5,PKS19,PKS24,PKS10,F3'H,PKS11,CHI6,CYP93G1,2ODD8,2ODD5,PKS25,LAP6,F3'H1,CHS,F3H2,LAR,CYP75A11,PKS3,DFR4,2ODD10,F3'H3,CHI2,_,2ODD19,PKS6,2ODD6,CHI1,CCR15,PKS23,PKS12,LDOX4,PKS20,PKS2,_,PEL9,PKS16,PKS5,PKS17,PKS18,CHS19,ANR2,DFR3,ANR4,PKS1 ,F3H1,ANR1,_,CHS23,RD,ANS,ANR6,F3'H8,F3'H5,FLS2,DFR5,PKS13,CHI7,2ODD2,LDOX5,PKS8,PKS4,2ODD3,2ODD17,ANS2,2ODD15,CYP93G2,CYP75B4,F3'H4,PKS27,PKS9,PKS7,LDOX8,CHI3,F3'H2,F3H3,CCR29,PKS14,LDOX7,ODD21,ANR3,CHI5,PKS15,F3'H6	OsLDOX9,OsANR5,OsPKS19, OsCHS20, CHS20,OsPKS24, OsCHS30, CHS30, OsCHS25, CHS25,OsPKS10, OsPKS2, PKS2, OsCHS10, CHS10,OsF3'H, OsCYP75B3, CYP75B3, OsF3'H10, F3'H10, OsCYP71P3, CYP71P3,OsPKS11, OsCHS11, CHS11,CHI, OsCHI6, OsCHIL1, CHIL1,OsCYP93G1, OsFNSII, FNSII, OsCYP71S4, CYP71S4,2-ODD8, Os2-ODD8, Os2ODD8, OsLDOX2, LDOX2,2-ODD5, Os2-ODD5, Os2ODD5, OsLDOX1, LDOX1,OsPKS25, OsCHS23, CHS23, OsCHS26, CHS26,OsPKS1, PKS1, YY2, OsPKS21, PKS21, OsLAP6/OsPKS1, OsLAP6, OsCHS22, CHS22,OsF3'H1, OsCYP71U1, CYP71U1, OsCYP706C2, CYP706C2,CHS*, Oschs, chs, chas, OsCHS, OsCHS1, CHS1, OsPKS26, PKS26, OsCHS24, CHS24, OsCHS27, CHS27,OsF3H-2, F3H-2, OsF3H2, FNS1, OsFNS1, OsSAH4, SAH4, OsF3H8, F3H8,OsLAR,OsCYP75A11, OsF3'5'H, F3'5'H, OsF3'5'H1, F3'5'H1,OsPKS03, PKS03, OsPKS3, OsCHS3, CHS3,DHFR, OsDFR4,2-ODD10, Os2-ODD10, Os2ODD10, OsF3H6, F3H6,OsF3'H3, OsCYP71W5, CYP71W5,OsCHI2, OsCHI4,OsCHI2, CHI2,OsODD19, ODD19, 2-ODD19, Os2-ODD19, Os2ODD19, OsF3H7, F3H7,CHS, OsPKS06, OsPKS6, PKS06, OsCHS6, CHS6,2-ODD6, Os2-ODD6, Os2ODD6, OsLDOX3, LDOX3,OsCHI1,OsCCR15, OsDFR8, DFR8,OsPKS23, OsCHS29, CHS29, OsCHS24, CHS24,CHS, OsPKS12, OsCHS12, CHS12,OsLDOX4,OsPKS20, OsCHS21, CHS21,CHS, OsPKS02, OsPKS2, PKS02, OsCHS2, CHS2,DHFR, OsDFR3, DFR3,OsLDOX6, LDOX6, OsPEL9,OsPKS16, OsCHS16, CHS16,OsPKS05, PKS05, OsPKS5, OsCHS5, CHS5,OsPKS17, OsCHS17, CHS17,OsPKS18, OsCHS18, CHS18,OsCHS19,OsANR2,OS-DFR3, OsDFR3, OsDFR7, DFR7,OsANR4,OsPKS01, PKS01, OsPKS1, OsCHS1, CHS1,OsF3H-1, F3H-1, OsF3H1, OsF3H, F3H, OsF3H3, F3H3,OsANR1,DFR2, OsDFR2,OsCHS23,Rd, DFR, OsDFR, OS-DFR, OsDFR1, DFR1, DFR-1,ANS, OsANS1, ANS1, LDOX, LDOX1, OsLDOX, OsLDOX1,OsANR6,OsF3'H, F3'H, OsF3'H8, OsCYP71W8, CYP71W8,OsF3'H5,OsFLS2,DHFR, OsDFR5,OsPKS13, OsCHS13, CHS13,CHI, OsCHI, OsCHI7, OsCHIL2, CHIL2,FLS, 2-ODD2, Os2-ODD2, Os2ODD2, OsF3H, F3H, F3H2, OsF3H2, OsF3H03g, F3H03g, OsSAH1, SAH1, OsF3H1, F3H1,OsLDOX5,OsCHS2, CHS2, OsPKS08, OsPKS8, PKS08, OsCHS8, CHS8,OsPKS04, PKS04, OsPKS4, OsCHS4, CHS4,2-ODD3, Os2-ODD3, Os2ODD3, OsF3H04g, F3H04g, OsSAH2, SAH2, OsF3H2, F3H2, OsF3H04g/OsSAH2, OsS5H3, S5H3,FLS, 2-ODD17, Os2-ODD17, Os2ODD17, OsFLS3, FLS3,OsANS2,FLS, OsFLS, 2-ODD15, Os2-ODD15, Os2ODD15, OsFLS1, FLS1,OsCYP93G2, OsF2H, F2H, OsCYP71S1, CYP71S1,OsCYP75B4, OsC5'H, C5'H, OsF3'H9, F3'H9, OsCYP71P2, CYP71P2,OsF3'H4, OsCYP71U11, CYP71U11,OsPKS27, OsCHS25, CHS25, OsCHS28, CHS28,OsPKS09, PKS09, OsPKS9, OsCHS9, CHS9,OsPKS07, PKS07, OsPKS7, OsCHS7, CHS7,OsLDOX8,gh1, GH1, OsGH1, OsCHI, Cfi, CHI, OsCHI3,OsF3'H2, OsCYP71W1, CYP71W1,OsF3H-3, F3H-3, OsF3H3, OsF3H4, F3H4,OsCCR29, OsDFR6, DFR6,OsPKS14, OsCHS14, CHS14,OsLDOX7, OsFLS1, FLS1,OsSTA135, STA135, OsODD21, 2-ODD21, Os2-ODD21, Os2ODD21, M2H, OsM2H, OsF3H5, F3H5,OsANR3,OsCHI5,OsPKS15, OsCHS15, CHS15,OsF3'H6, OsF3'H7, F3'H6, CYP92A8, OsCYP92A8, OsCYP71W7, CYP71W7
51310	35270125	Ishikawa T., Shabala L., Zhou M., Venkataraman G., Yu M., Sellamuthu G., Chen Z.H., Shabala S.	Comparative Analysis of Root Na+ Relation under Salinity between <i>Oryza</i>&nbsp;<i>sativa</i> and <i>Oryza coarctata</i>.	Plants (Basel)	11(5)		2022		
51311	35123539	Hussain W., Anumalla M., Catolos M., Khanna A., Sta Cruz MT., Ramos J., Bhosale S.	Open-source analytical pipeline for robust data analysis, visualizations and sharing in crop breeding.	Plant Methods	18(1)	14	2022		
51312	35190950	Gao Y., Chen Y., Feng H., Zhang Y., Yue Z.	RicENN: Prediction of Rice Enhancers with Neural Network Based on DNA Sequences.	Interdiscip Sci			2022		
51313	35149214	Cai J., Xiao G., Su R.	GC6mA-Pred: A deep learning approach to identify DNA N6-methyladenine sites in the rice genome.	Methods			2022		
51314	35218074	Takatsuka A., Kazama T., Arimura S.I., Toriyama K.	TALEN-mediated depletion of the mitochondrial gene orf312 proves that it is a Tadukan-type cytoplasmic male sterility-causative gene in rice.	Plant J.			2022		
51315	35214820	Qin G., Wu S., Zhang L., Li Y., Liu C., Yu J., Deng L., Xiao G., Zhang Z.	An Efficient Modular Gateway Recombinase-Based Gene Stacking System for Generating Multi-Trait Transgenic Plants.	Plants (Basel)	11(4)		2022		
51316	35189402	Li H., Nian J., Fang S., Guo M., Huang X., Zhang F., Wang Q., Zhang J., Bai J., Dong G., Xin P., Xie X., Chen F., Wang G., Wang Y., Qian Q., Zuo J., Chu J., Ma X.	Regulation of nitrogen starvation responses by the alarmone (p)ppGpp in rice.	J Genet Genomics			2022	ARE2	OsARE2
51317	35128701	Takehisa H., Ando F., Takara Y., Ikehata A., Sato Y.	Transcriptome and hyperspectral profiling allows assessment of phosphorus nutrient status in rice under field conditions.	Plant Cell Environ.	45(5)	1507-1519	2022		
51318	35125073	Avsar B.	Effective Strategies for Heterologous Expression of Plant heterotrimeric G-protein gamma Subunits without Gbeta subunit Partners	Protein Pept. Lett.			2022		
51319	35184267	Sharma A., Chouhan A., Bhatt T., Kaur A., Minhas A.P.	Selectable Markers to Marker-Free Selection in Rice.	Mol. Biotechnol.			2022		
51320	35139891	Li S., Liu L., Sun W., Zhou X., Zhou H.	A large-scale genome and transcriptome sequencing analysis reveals the mutation landscapes induced by high-activity adenine base editors in plants.	Genome Biol.	23(1)	51	2022		
51321	35178842	Zhou L., Gao G., Tang R., Wang W., Wang Y., Tian S., Qin G.	m6 A-mediated regulation of crop development and stress responses.	Plant Biotechnol. J.			2022		
51322	35184695	Ji H., Li T., Li X., Li J., Yu J., Zhang X., Liu D.	XopZ and ORP1C cooperate to regulate the virulence of <i>Xanthomonas oryzae</i> pv. <i>oryzae</i> on Nipponbare.	Plant Signal Behav	17(1)	2035126	2022	ORP1C	OsORP1C
51323	35140275	Sabouri A., Dadras A.R., Azari M., Saberi Kouchesfahani A., Taslimi M., Jalalifar R.	Screening of rice drought-tolerant lines by introducing a new composite selection index and competitive with multivariate methods.	Sci Rep	12(1)	2163	2022		
51324	34865119	Lin Y.N., Jiang C.K., Cheng Z.K., Wang D.H., Shen L.P., Xu C., Xu Z.H., Bai S.N.	Rice Cell Division Cycle 20s are required for faithful chromosome segregation and cytokinesis during meiosis.	Plant Physiol.	188(2)	1111-1128	2022	WD40-109,WD40-167,CDC20.1	OsWD40-109, OsCDC20, CDC20, CDC20.1, OsCDC20.1,  OsCDC20-2, CDC20-2, OsCDC20B, CDC20B,OsWD40-167, CDC20.3, OsCDC20.3,  OsCDC20-1, CDC20-1,OsWD40-51, OsCDC20.1, WD40-51, CDC20.1, CDC20.2, OsCDC20.2,  OsCDC20-3, CDC20-3, OsCDC20A, CDC20A
51325	35115727	Xiao Q., Huang X., Zhang Y., Xu W., Yang Y., Zhang Q., Hu Z., Xing F., Sun Q., Li G., Li X.	The landscape of promoter-centred RNA-DNA interactions in rice.	Nat Plants	8(2)	157-170	2022		
51326	35163610	Tomar S., Subba A., Bala M., Singh A.K., Pareek A., Singla-Pareek SL.	Genetic Conservation of CBS Domain Containing Protein Family in <i>Oryza</i> Species and Their Association with Abiotic Stress Responses.	Int J Mol Sci	23(3)		2022	CBSCBSPB2,CBSX10,CBSDUF3,CBSPPR1,CBSDUFCH1,CBSSIS1,CBSCOATOMERE,CBSCBS5,DPS1,CBSX12,CBSX5,CBSDUF2,CBSCBS6,CBSCBSPB3,CBSDUFCH2,CBSCBS3,CBSX6,CBSX11,CBSCBS2,CBSCBS4,CBSCLC11,CBSCLC4,CBSCBS7,CBSX14,CBSX7,CLC2,CBSCBSPB5,CBSCLC9,CBSX9,CBSCLC7,CBSX1,_,CBSCLC6,CBSCLC2,CBSIMPDH1,CBSCLC5,_,CBSCBSPB4,CBSCLC1,CBSTERCH,CBSX4,CBSCLC8,CBSCLC10,CBSX15,CBSX3,CBSX8,CBSX13,CBSCBSPB1,CBSX2,_	OsCBSCBSPB2,OsCBSX10, CBSCBS4, OsCBSCBS4,OsCBSDUF3, OsSTA88,OsCBSPPR1,OsCBSDUFCH1, OsCBSDUFCH1a, OsCBSDUFCH1b,OsCBSSIS1,CBSCoatomerE, OsCBSCoatomerE, OsICBSCoatomerE,OsCBSCBS5, CBSX7, OsCBSX7,OsCBSDUF1, OsCBSDUF1a, OsCBSDUF1b, CBSDUF1, CBSDUF1a, CBSDUF1b,OsCBSX12,OsCBSX5,OsCBSDUF2,OgCBSCBS6,OsCBSCBSPB3,OgCBSDUFCH2,OsCBSCBS3,OsCBSX6,OsCBSX11,OsCBSCBS2,OsCBSCBS4, OsCBSCBS4a, OsCBSCBS4b, OsCBSCBS4c, OsCBSCBS4d, OsCBSCBS4e, CBSCBSCBD2, OsCBSCBSCBD2,ObCBSCLC11,OsCBSCLC4, OsCLC4, CLC4,OgCBSCBS7,OmCBSX14,OsCBSX7, OsCBSX7a, OsCBSX7b, OsCBSCBS1, CBSCBS1,CBSCLC3, OsCBSCLC3, OsCBSCLC3a, OsCBSCLC3b, OsCLC1, OsCLC-1, OsCLC2, OsCLC-2, CLC-2, OsCLC3, CLC3,ObCBSCBSPB5, ObrCBSCBSPB5, OrCBSCBSPB5, OpCBSCBSPB5, OnCBSCBSPB5, OmCBSCBSPB5, OlCBSCBSPB5, OsICBSCBSPB5, OgCBSCBSPB5,OsCBSCLC9, OsCBSCLC9a, OsCBSCLC9b,OsCBSX9,OsCBSCLC7, OsCLC7, CLC7,OsCBSX1, Cen8.t00941,CBSX10, OsCBSX10,OsCBSCLC6, OsCBSCLC6a, OsCBSCLC6b, OsCLC6, CLC6,OsCBSCLC2, OsCLC2, CLC2,OsCBSIMPDH1, OsCBSIMPDH1a, OsCBSIMPDH1b, IMPDH, OsIMPDH,OsCBSCLC5, OsCLC5, CLC5,OmCBSCBS5, CBSCBS5,OsCBSCBSPB4,OsCBSCLC1, OsCLC1, CLC1,CBSTerCH, OsCBSTerCH, OsICBSTerCH,OsCBSX4, OsCBSX4a, OsCBSX4b, OsCBSX4c, OsCBSX4d, OsCBSX4e, OsCBSX4f,OsCBSCLC8,OsCBSCLC10, OsCBSCLC10a, OsCBSCLC10b,OnCBSX15,OsCBSX3, OsCBSX3a, OsCBSX3b, OsCBSX3c, OsCBSX3d, OsCBSX3e,OsCBSX8, CBSCBSCBD1, OsCBSCBSCBD1,OmCBSX13,OsCBSCBSPB1,OsCBSX2,CBSX8, OsCBSX8
51327	35150038	Deb S., Gokulan C.G., Nathawat R., Patel H.K., Sonti R.V.	Suppression of XopQ-XopX-induced immune responses of rice by the type III effector XopG.	Mol. Plant Pathol.	23(5)	634-648	2022		
51328	35219957	Chen Z.J., Liu J., Zhang N., Yang H.	Identification, characterization and expression of rice (Oryza sativa) acetyltransferase genes exposed to realistic environmental contamination of mesotrione and fomesafen.	Ecotoxicol. Environ. Saf.	233	113349	2022		
51329	35161359	Ichitani K., Toyomoto D., Uemura M., Monda K., Ichikawa M., Henry R., Sato T., Taura S., Ishikawa R.	New Hybrid Spikelet Sterility Gene Found in Interspecific Cross between <i>Oryza sativa</i> and <i>O. meridionalis</i>.	Plants (Basel)	11(3)		2022	S57	
51330	12728997	Otsuki S., Ikeda A., Sunako T., Muto S., Yazaki J., Nakamura K., Fujii F., Shimbo K., Otsuka Y., Yamamoto K., Sakata K., Sasaki T., Kishimoto N., Kikuchi S., Yamaguchi J.	Novel gene encoding a Ca2+-binding protein and under hexokinase-dependent sugar regulation.	Biosci. Biotechnol. Biochem.	67(2)	347-53	2003	SUR1	OsSUR1
51331	12177140	Rzewuski G., Sauter M.	The novel rice (Oryza sativa L.) gene OsSbf1 encodes a putative member of the Na+/bile acid symporter family.	J. Exp. Bot.	53(376)	1991-3	2002	SBF1	OsSBF1
51332	0	Win K.T., Kubo T., Miyazaki Y., Doi K., Yamagata Y., Yoshimura A.	Identification of two loci causing F1 pollen sterility in inter- and intraspecific crosses of rice	Breed. Sci.	59(4)	411-418	2009		
51333	0	Xu P., Zhou J., Li J., Hu F., Deng X., Feng S., Ren G., Zhang Z., Deng W., Tao D.	Mapping three new interspecific hybrid sterile loci between Oryza sativa and O. glaberrima	Breed. Sci.	63	476-482	2014	S39,S38,S37	S39(t),S38(t),S37(t)
51334	0	Chen Z., Hu F., Xu P., Li J., Deng X., Zhou J., Li F., Chen S., Tao D.	QTL analysis for hybrid sterility and plant height in interspecific populations derived from a wild rice relative, Oryza longistaminata	Breed. Sci.	59(4)	441-445	2009		
51335	0	Hu F., Xu P., Deng X., Zhou J., Li J., Tao D.	Molecular Mapping of a pollen killer gene S29(t) in Oryza Glaberrima and Co-Linear Analysis with S22 in O. Glumaepatula	Euphytica	151	273?278	2006	S22,S29	S22(t),S29(t)
51336	25914585	Sakata M., Yamagata Y., Doi K., Yoshimura A.	Two linked genes on rice chromosome 2 for F1 pollen sterility in a hybrid between Oryza sativa and O. glumaepatula.	Breed. Sci.	64(4)	309-20	2014	S22B,S22,S22A	S22(t), S22B,S22(t),S22(t), S22A
51337	10589160	C X Zhuang, G Q Zhang, M T Mei, Y G Lu	[Molecular mapping of the S-a locus for F1 pollen sterility in cultivated rice (Oryza sativa L.)].	Yi Chuan Xue Bao	26(3)	213-8	1999	SA	Sa*, S-a, Hst16
51338	0	MIYAZAKI Y., Doi K., YASUI H., Yoshimura A.	Identification of a new allele of F1 pollen sterility gene, S21, detected from the hybrid between Oryza sativa and O. rufipogon	RGN	23	36-38	2007	S21,S23	S21*, Hst44,S23(t)
51339	0	ZHU Wen-yin, LI Wen-tao, DING Xiao-hua, ZHANG Ze-min, ZENG Rui-zhen, ZHU Hai-tao, ZHANG Gui-quan	Preliminary Identification of F1 pollen sterility Gene S-e in Oryza sativa	Journal of South China Agricultural University	29(1)	1-5	2008	SE	Se*, S-e, Hst20
51340	0	Zhang Y., Zhao Z., Zhou J., Jiang L., Bian X., Wang Y., Wang C., Zhong Z., Wang J., Tao D., Wan J.	Fine mapping of a gene responsible for pollen semi-sterility in hybrids between Oryza sativa L. and O. glaberrima Steud	Molecular Breeding	28	323-334	2011	S19	
51341	0	Li F., Liu F.H., Morinaga D., Zhao Z.	A new gene for hybrid sterility from a cross between Oryza sativa and O. glaberrima	Plant Breeding	130	165-171	2011	_	S36(t)
51342	0	Wang F., Tan H., Han J., Zhang Y., He X., Ding Y., ZhiXiang Chen, Zhu C.	A novel family of PLAC8 motif-containing/PCR genes mediates Cd tolerance and Cd accumulation in rice.	Environmental Sciences Europe	31	82	2019	TGW2,FWL2	OsFWL1, FWL1, OsTGW2, OsCNR1, CNR1, OsPCR3, PCR3, OsFWL3, FWL3,OsFWL2, OsPCR1, PCR1, OsFWL1, FWL1
51343	0	Xiu-Qing Jing, Shalmani A., Meng-Ru Zhou, Peng-Tao Shi, Muhammad I., Shi Y., Sharif R., Wen-Qiang Li, Wen-Ting Liu, Kun-Ming Chen	Genome-Wide Identification of Malectin/malectin-like domain Containing Protein Family Genes in Rice and Their Expression Regulation Under Various Hormones, Abiotic Stresses, and Heavy Metal Treatments	J. Plant Growth Regul.	39	492-506	2020	MRLK67,MRLP6,CRRLK1L1,MRLP5,RLCK183,MTD2,MRLK43,MRLK8,MRLK54,MRLK35,MRLK47,CRRLK1L15,MRLP14,MRLK38,MRLP17,MRLK13,RLCK161,RLCK46,MRLK15,MRLK37,MRLP4,CRRLK1L12,MRLK22,MRLP2,CRRLK1L7,MRLK32,MRLK27,MRLP7,CRRLK1L4,MRLK26,DRUS2,RLCK264,MRLK17,MRLK6,MRLK44,MRLP16,RLCK190,RUPO,MRLK65,MRLK24,MRLP1,MRLK50,MRLP9,DRUS1,MRLK48,MRLK52,MRLK59,CRRLK1L14,MRLK46,MRLK25,MRLP10,RPK3,CRRLK1L3,MRLK61,RLCK265,CRRLK1L16,RLCK266,MRLK66,MRLK23,MRLK58,MRLK36,MRLP3,MRLK4,MRLK53,MRLK57,MRLP11,MRLK56,MRLK49,MRLK7,MRLK45,MRLK16,MRLK34,D305,CRRLK1L6,RLCK267,MRLK21,MRLK18,MRLP13,CRRLK1L10,MRLP12,MRLK1,RLCK159	OsMRLK67,OsMRLP6,OsCrRLK1L1, CrRLK1L1, OsMRLK12, MRLK12, FLR10, OsFLR10,OsMRLP5,OsRLCK183, OsCrRLK1L2, CrRLK1L2, OsMRLK31, MRLK31, FLR4, OsFLR4,OsMTD2, YK11, OsCrRLK1L11, CrRLK1L11, OsMRLK29, MRLK29, FLR6, OsFLR6,OsMRLK43,OsMRLK8,OsMRLK54,OsMRLK35,OsMRLK47,OsCrRLK1L15, CrRLK1L15, OsMRLK42, MRLK42, FLR7, OsFLR7,OsMRLP14,OsMRLK38,OsMRLP17,OsMRLK13,OsRLCK161, OsCrRLK1L9, CrRLK1L9, OsMRLK19, MRLK19, FLR8, OsFLR8,OsRLCK46, OsMRLK5, MRLK5,OsMRLK15,OsMRLK37,OsMRLP4, OsMLD1, MLD1,OsCrRLK1L12, CrRLK1L12, OsMRLK30, MRLK30, FLR5, OsFLR5,OsMRLK22,OsMRLP2,OsCrRLK1L7, CrRLK1L7, OsMRLK10, MRLK10, FLR13, OsFLR13,OsMRLK32,OsMRLK27, OsMRLK28, MRLK28,OsMRLP7,OsCrRLK1L4, CrRLK1L4, OsMRLK2, MRLK2, FLR14, OsFLR14,OsMRLK26,YK1, OsCrRLK1L5, CrRLK1L5, OsDRUS2, OsMRLK3, MRLK3, FLR2, OsFLR2,OsRLCK264, OsMRLK51, MRLK51,OsMRLK17,OsMRLK6,OsMRLK44,OsMRLP16,OsRLCK190, OsMRLK39, MRLK39,OsRLCK193, RLCK193, OsCrRLK1L13, CrRLK1L13, OsMRLK40, MRLK40, FLR9, OsFLR9,OsMRLK65,OsMRLK24,PLRRP, OsMRLP1,OsMRLK50,OsMRLP9,OsCrRLK1L8, CrRLK1L8, FLR1, OsFLR1, OsMRLK11, MRLK11, OsDRUS1,OsMRLK48,OsMRLK52,OsMRLK59,OsCrRLK1L14, CrRLK1L14, OsMRLK41, MRLK41, FLR15, OsFLR15,SHR5, OsMRLK46,OsMRLK25,OsMRLP10,OsRPK3, OsMRLK63, MRLK63, OsCBM1, CBM1, OsMRLP15, MRLP15,OsCrRLK1L3, CrRLK1L3, OsMRLK33, MRLK33, FLR3, OsFLR3,OsMRLK61,OsRLCK265, OsMRLK55, MRLK55,OsCrRLK1L16, CrRLK1L16, OsMRLK64, MRLK64, FLR11, OsFLR11,OsRLCK266, OsSIRK1, SIRK1, OsMRLK60, MRLK60,OsMRLK66,OsMRLK23,OsMRLK58,OsMRLK36, OsMRLP8, MRLP8,OsMRLP3,OsMRLK4,OsMRLK53,OsMRLK57,OsMRLP11,OsMRLK56,OsMRLK49,OsMRLK7,OsMRLK45,OsMRLK16,OsMRLK34,OsD305, OsMRLK62, MRLK62,OsCrRLK1L6, CrRLK1L6, OsMRLK9, MRLK9, FLR12, OsFLR12,OsRLCK267, OsRPK1, RPK1, OsMRLP15, MRLP15,OsMRLK21,OsMRLK18,OsMRLP13,OsCrRLK1L10, CrRLK1L10, OsMRLK20, MRLK20, FLR16, OsFLR16,OsMRLP12,OsMRLK1,OsRLCK159, OsMRLK14, MRLK14
51344	0	Aoki H., Teramura H., Schepetilnikov M., Lyubov A Ryabova, Kusano H., Shimada H.	Enhanced translation of the downstream ORF attributed to a long 5 untranslated region in the OsMac1 gene family members, OsMac2 and OsMac3	Plant Biotechnology	31	221-228	2014	MAC3,MAC4,MAC1,MAC2	OsMac3,OsMac4,OsMac1, Mac1,OsMac2
51345	34116223	Zhou S., Li X., Liu Q., Zhao Y., Jiang W., Wu A., Zhou D.X.	DNA demethylases remodel DNA methylation in rice gametes and zygote and are required for reproduction.	Mol Plant			2021	TA2,DNG701,DNG704	ROS1A, ROS1a, DME1, OsROS1A, OsROS1, ROS1, mOsROS1, ROS1A/DNG702, DNG702, OsDNG702,ROS1C, ROS1c, Os ROS1C, DME2, OsDNG701, ROS1C/DNG701,OsROS1D, ROS1D, ROS1d, ROS1D/DNG704, OsDNG704
51346	25311531	Zhao J., David S Favero, Qiu J., Eric H Roalson, Michael M Neff	Insights into the evolution and diversification of the AT-hook Motif Nuclear Localized gene family in land plants.	BMC Plant Biol.	14	266	2014	AHL2,AHL3,_,AHL15,AHL17,_,_,_,AHL9,PTC2,_,DP1,AHL7	OsAHL2,OsAHL3,AHL,OsAHL15, AHL,OsAHL17, AHL,AHL,AHL,AHL,OsAHL9,OsPTC2, OsAHL4, AHL4,AHL,dp1, pa, DP1/PAL1, PAL1, OsDP1, OsAHL11, AHL11,OsAHL7
51347	34963002	Pui Ying Lam, Wang L., Andy C W Lui, Liu H., Yuri Takeda-Kimura, Mo-Xian Chen, Fu-Yuan Zhu, Zhang J., Umezawa T., Tobimatsu Y., Lo C.	Deficiency in flavonoid biosynthesis genes CHS, CHI, and CHIL alters rice flavonoid and lignin profiles.	Plant Physiol.	188(4)	1993-2011	2022	CHI7,CHI6	CHI, OsCHI, OsCHI7, OsCHIL2, CHIL2,CHI, OsCHI6, OsCHIL1, CHIL1
51348	0	Wang J., Wan R., Nie H., Xue S., Fang Z.	OsNPF5.16, a nitrate transporter gene with natural variation, is essential for rice growth and yield	The Crop Journal	10	397-406	2022	NPF5.16,NPF2.4,NRT1,D53,RR5,RR8,RR25,YUCCA5,PTR2,RR1,NPF2.3,NPF6.5,IAA12,YUCCA6	PTR, OsNPF5.16,OsNPF2.4, OsPTR2, PTR2,OsNRT1, OsNRT1;1, OsNRT1.1, OsNRT1.1a, OsNRT1.1b, NRT1.1, NRT1.1a, NRT1.1b, OsNPF8.9, NPF8.9 , OsNRT1.1B,D53(D K3), DK3, Dwf34, SMXL6/7/8, OsD53,rr5, OsRR5, Rra4, OsRRA4,rr8, OsRR8, Rra13, OsRR15, RR15, OsRRA13,OsRR25, Rrb3, Orr5, OsORR5, OsRR21, OsRRB3,OsYUCCA5, OsYUC5, YUC5,OsPTR2, OsNPF2.2, NPF2.2,rr1, OsRR1, Rra9, OsRRA9,PTR, OsNPF2.3,OsNRT1.1B, NRT1.1B, OsNPF6.5,OsIAA12,OsYUCCA6, OsYUC6, YUC6
51349	0	Lu J., Li Q., Wang C., Wang M., Zeng D., Zhang F., Zhai W., Zhou Y.	Identification of quantitative trait loci associated with resistance to Xanthomonas oryzae pv. oryzae pathotypes prevalent in South China	The Crop Journal	10	498-507	2022	PRAF2	OsPRAF2, OsFYVE10, FYVE10
51350	31555061	Tang W., Wells A Thompson	OsmiR528 Enhances Cold Stress Tolerance by Repressing Expression of stress response-related transcription factor.Genes in Plant Cells.	Curr. Genomics	20(2)	100-114	2019	BMY6,2R_MYB38,_,BMY2,MYBS3,MYB30,MYB1R,GAMYBL1,MYB59,BMY10 ,D3,MIR528	OsBMY6, BAM3, OsBAM3,OsMYB5, MYB5, Os2R_MYB38,OsMYB4, Osmyb4, OsMyb4, MYB4, OsMYB55, MYB55, OsMyb8, MYB8, OsMYB13b, MYB13b, OsMYB15, MYB15, Os2R_MYB46, 2R_MYB46,OsBMY2, OsBmy6, Bmy6,OsMYBS3,OsMYB30, OsMYB5P, MYB5P, OsMYB13a, MYB13a, Os2R_MYB26, 2R_MYB26, OsMYB30C, MYB30C,OsMyb1R, OsMYB1R, LHY-like_chr.2,OsGAMYBL1, OsMYB80, MYB80, Os2R_MYB66, 2R_MYB66,OsMYB59, OsHHO3, HHO3,OsBMY10, OsBES1-3, BES1-3,d3, dwf3, D3/OsMAX2, Os_F0760, SOL1, OsORE9, ORE9, MAX2, OsRFPH2-10, RFPH2-10, OsD3,  OsFBL27, FBL27,miR528, Osa-miR528, OsmiR528, OsMIR528, osa-MIR528, miR528*, osa-miR528, osa-miR528-5p, MIR528-T1, MIR528-T2
51351	34761253	Hu D., Yu Y., Wang C., Long Y., Liu Y., Feng L., Lu D., Liu B., Jia J., Xia R., Du J., Zhong X., Gong L., Wang K., Zhai J.	Erratum for: Multiplex CRISPR-Cas9 editing of DNA methyltransferases in rice uncovers a class of non-CG methylation specific for GC-rich regions.	Plant Cell	34(4)	1416	2022		
51352	34788458	Lee Y., Okita T.W., Szymanski D.B.	Erratum to: A co-fractionation mass spectrometry-based prediction of protein complex assemblies in the developing rice aleurone-subaleurone.	Plant Cell	34(4)	1415	2022		
51353	35217598	Wang W.Q., Xu D.Y., Sui Y.P., Ding X.H., Song X.J.	A multiomic study uncovers a bZIP23-PER1A-mediated detoxification pathway to enhance seed vigor in rice.	Proc. Natl. Acad. Sci. U.S.A.	119(9)		2022		
51354	35324310	Chen W., Chen L., Zhang X., Yang N., Guo J., Wang M., Ji S., Zhao X., Yin P., Cai L., Xu J., Zhang L., Han Y., Xiao Y., Xu G., Wang Y., Wang S., Wu S., Yang F., Jackson D., Cheng J., Chen S., Sun C., Qin F., Tian F., Fernie A.R., Li J., Yan J., Yang X.	Convergent selection of a WD40 protein that enhances grain yield in maize and rice.	Science	375(6587)	eabg7985	2022	_,KRN2	,OsWD40-106, WD40-106, OsKRN2
51355	35234929	Artur M.A.S.	Ethylene and gibberellins at the crossroads of rice root elongation.	Plant Cell	34(4)	1157-1158	2022		
51356	35021223	Qin H., Pandey B.K., Li Y., Huang G., Wang J., Quan R., Zhou J., Zhou Y., Miao Y., Zhang D., Bennett M.J., Huang R.	Orchestration of ethylene and gibberellin signals determines primary root elongation in rice.	Plant Cell	34(4)	1273-1288	2022		
51357	35279443	Qin C., Fang Q., Fan X., Chen M., Jiang M.	Phosphorylation of DUF1639 protein by osmotic stress/ABA-activated Protein Kinase 10 regulates abscisic acid-induced antioxidant defense in rice.	Biochem. Biophys. Res. Commun.	604	30-36	2022	DUF1639.1	OsDUF1639.1
51358	35348854	Xun Q., Mei M., Song Y., Rong C., Liu J., Zhong T., Ding Y., Ding C.	SWI2/SNF2 chromatin remodeling ATPases SPLAYED and BRAHMA control embryo development in rice.	Plant Cell Rep.	41(6)	1389-1401	2022	BRM,SYD	OsCHR707, CHR707, OsBRM, OsBrd11, Brd11,OsCHR720, OsSYD, CHR720
51359	35344250	Jing X., Song X., Cai S., Wang P., Lu G., Yu L., Zhang C., Wu Z.	Overexpression of OsHAK5 potassium transporter enhances virus resistance in rice (Oryza sativa).	Mol. Plant Pathol.	23(8)	1107-1121	2022	AKT1,HAK5,SKC1,HKT4,HKT1,HAK17,HAK7,LCS	OsAKT1, Os-AKT1,OsHAK5, FCO13, OsFCO13,OsHKT8, HKT8, Os-HKT1;5, OsHKT1;5, HKT1;5, SKC1, qSKC-1(t), OsSKC1,OsHKT4, OsHKT1;1, HKT1;1, OsHKT2, RNC4, OsHKT1;1-FL, OsHKT1;1-V1, OsHKT1;1-V2, OsHKT1;1-V3, OsHKT1;1-V4, OsHKT1;1-V5, OsHKT1;1-V6, OsHKT1;1-V7, OsHKT1;1-V8,OsHKT1, OsHKT2;1, HKT2;1, Ni (Nipponbare)-OsHKT1, Po (Pokkali)-HKT1, OsHKT1;1, HKT1;1,OsHAK17, FCO3, FCO4,OsHAK7,OsHAK1, HAK1
51360	34958388	Zhang M., Shi H., Li N., Wei N., Tian Y., Peng J., Chen X., Zhang L., Zhang M., Dong H.	Aquaporin OsPIP2;2 links the H2O2 signal and a membrane-anchored transcription factor to promote plant defense.	Plant Physiol.	188(4)	2325-2341	2022	PIP1;3,MAMYB,PIP2;6,PIP2;3,PIP2;2	OsPIP1;3. PIP1.3, PIP1-3, RWC3, RWC-3, OsPIP1-3,OsmaMYB, maMYB,OsPIP2;6, PIP2-6, OsPIP2-6, PIP2-5, OsPIP2-5,OsPIP2;3, PIP2-3, OsPIP2-2,OsPIP2;2, PIP2-2, OsPIP2-3
51361	35306222	Zhao G., Wang J., Chen X., Sha H., Liu X., Han Y., Qiu G., Zhang F., Fang J.	OsASHL1 and OsASHL2, two members of the COMPASS-like complex, control floral transition and plant development in rice.	J Genet Genomics			2022	ASHL2,ASHL1,ASHL3	OsASHL2,OsASHL1,OsASHL3
51362	35336670	Duyen D.V., Kwon Y., Kabange N.R., Lee J.Y., Lee S.M., Kang J.W., Park H., Cha J.K., Cho J.H., Shin D., Lee J.H.	Novel QTL Associated with Aerenchyma-Mediated Radial Oxygen Loss (ROL) in Rice (<i>Oryza sativa</i> L.) under Iron (II) Sulfide.	Plants (Basel)	11(6)		2022	WBC8,PLIM2A,LRR2,MYB21,TCP7,_,ARF8,TRX8,CAL1,CYB5-11	OsWBC8,OsPLIM2a, PLIM2a,OsLRR2,R2R3-MYB, OsMYB21, Os2R_MYB27, 2R_MYB27,OsTCP7, CHE,OsEXPA,OsARF8,OsTRXM1, TRXM1, OsTrx08, Trx08, OsTrx8, Trx8,OsCPT1, CPT1, DEFL7, OsDEFL7, OsDf-07, Df-07, OsPR12, PR12, DEF7, OsDEF7, OsAFP1, AFP1, OsPDF2.2, PDF2.2,OsCYB5-11, Oscb5, cb5
51363	35322309	Tang J., Mei E., He M., Bu Q., Tian X.	Functions of OsWRKY24, OsWRKY70 and OsWRKY53 in regulating grain size.in rice.	Planta	255(4)	92	2022		
51364	35150234	Sakamoto S., Yoshikawa T., Teraishi M., Yoshinaga N., Ochiai K., Kobayashi M., Schmelz E.A., Okumoto Y., Mori N.	A nonproteinogenic amino acid, beta-tyrosine, accumulates in young rice leaves via long-distance phloem transport from mature leaves.	Biosci. Biotechnol. Biochem.	86(4)	427-434	2022		
51365	34888695	Liu J., Shi X., Chang Z., Ding Y., Ding C.	Auxin Efflux Transporters OsPIN1c and OsPIN1d Function Redundantly in Regulating Rice (Oryza sativa L.) Panicle Development.	Plant Cell Physiol.	63(3)	305-316	2022		
51366	35211968	Wu L.B., Eom J.S., Isoda R., Li C., Char S.N., Luo D., Schepler-Luu V., Nakamura M., Yang B., Frommer W.B.	OsSWEET11b, a potential sixth leaf blight susceptibility gene involved in sugar transport-dependent male fertility.	New Phytol.	234(3)	975-989	2022	XA13,SWEET11B	xa13, Xa13, Os8N3, Os-8N3, 8N3, OsSWEET11, SWEET11, OsSWEET11/Xa13, Xa13/Os8N3/SWEET11, Os8N3/Xa13, OsSWEET11/Os8N3, OsSWEET11a, SWEET11a,OsSWEET11b
51367	35157083	Ikram A.U., Zhang F., Xu Z., Li E., Xue G., Wang S., Zhang C., Yang Y., Su Y., Ding Y.	Chromatin remodeling factors OsYAF9 and OsSWC4 interact to promote internode elongation in rice.	Plant Physiol.	188(4)	2199-2214	2022	YAF9,SWC4 	OsYAF9,OsSWC4 
51368	35344097	Nie L., Song S., Yin Q., Zhao T., Liu H., He A., Wang W.	Enhancement in Seed Priming-Induced Starch Degradation of Rice Seed Under Chilling Stress via GA-Mediated alpha-amylase Expression.	Rice (N Y)	15(1)	19	2022	D18,AMY3B,AMY3E,AMY3D,AMY1A,GNP1	d18-h  (d18-I, d18h), dwf15, d25, d18, d18-k, d18-AD, d18-dy, OsGA3ox2, ga3ox2, OsGA3OX2, GA3OX2, OsGA3ox-2, GA3ox-2, GA3ox1,Amy3A/B/C*(RAmy3A/B/C), alpha Amy6, AmyII-5, AMY1.6, Amy1.6, Amy3B, BRAmy3A/B/C, Amy3A/B/C*, Amy6, RAmy3B, alphaAmy6-C, OsRamy3B, OsAmy3C,Amy3D/E*(RAmy3D/E), alpha Amy8, alphaAmy8, AmyII-3, AMY1.4, Amy3E, Amy3D/E*, RAmy3D/E, Amy9, RAmy3E, alphaAmy8-C, AMY3E/AMY1.4, OsAmy3E, OsRamy3E,Amy3D/E*(RAmy3D/E), alpha Amy3, AmyII-4, AMY1.3, Amy3D, Amy3D/E*, RAmy3D/E, Amy3D_E, Amy8, aAmy3, RAmy3D, OsAmy3D, alphaAmy3, OsRamy3D,Amy1A/C*(RAmy1A/C), alpha Amy7, AMY1.1, Amy1A, RAmy1A/C, Amy1A/C*, Amy1, Amy1A_C, OsAmy1A, alphaAmy7-C, RAmy1A, AmyI-1, OsAmyI-1, OsRamy1A,GA20OX1, OsGA20ox1, 20ox1, GA20ox-1, ga20ox1, Os20ox, C20OX2, OsGA20ox2, OsGA20ox-1, GA20ox1, OsGNP1
51369	35297056	Zhou J., Nguyen T.H., Hmidi D., Luu D.T., Sentenac H., V?ry AA.	The outward shaker channel OsK5.2 improves plant salt tolerance by contributing to control of both leaf transpiration and K+ secretion into xylem sap.	Plant Cell Environ.	45(6)	1734-1748	2022		
51370	35293577	Hughes T.E., Langdale J.A.	SCARECROW is deployed in distinct contexts during rice and maize leaf development.	Development	149(7)		2022	SCR,BHLH55,SCR1,BHLH51	OsSCR, OsSCR2, SCR2, OsGRAS-51, OsGRAS51, GRAS-51, GRAS51,OsbHLH055, bHLH055, bHLH55, OsMUTE, MUTE,OsSCR1, OsSCR, OsGRAS-41, OsGRAS41, GRAS-41, GRAS41,OsbHLH051, bHLH051, bHLH51, OsFAMA, FAMA
51371	35331929	Chen L., Ji C., Zhou D., Gou X., Tang J., Jiang Y., Han J., Liu Y.G., Chen L., Xie Y.	OsLTP47 may function in a lipid transfer relay essential for pollen wall development in rice.	J Genet Genomics	49(5)	481-491	2022		
51372	35278988	Yang H., Yu H., Wu Y., Huang H., Zhang X., Ye D., Wang Y., Zheng Z., Li T.	Nitric oxide amplifies cadmium binding in root cell wall of a high cadmium-accumulating rice (Oryza sativa L.) line by promoting hemicellulose synthesis and pectin demethylesterification.	Ecotoxicol. Environ. Saf.	234	113404	2022		
51373	34941378	Dai H., Zhang X., Zhao B., Shi J., Zhang C., Wang G., Yu N., Wang E.	Colonization of Mutualistic Mycorrhizal and Parasitic Blast Fungi Requires OsRAM2-Regulated Fatty Acid Biosynthesis in Rice.	Mol. Plant Microbe Interact.	35(3)	178-186	2022		
51374	35341969	Fang L., Ma L., Zhao S., Cao R., Jiao G., Hu P., Wei X.	Alanine aminotransferase (OsAlaAT1) modulates nitrogen utilization, grain yield, and quality in rice.	J Genet Genomics	49(5)	510-513	2022		
51375	35406831	Park J.R., Son J.H., Kim E.G., Jang Y.H., Yun B.J., Kim K.M.	Phenotype and Genotype Interaction Underlying Distributive Characteristic for Awn Development in Rice.	Plants (Basel)	11(7)		2022	DL	OsDL, dl(lop), lop, dl, dl1, OsDRPq3, DRPq3
51376	35275421	Song Y., Niu R., Yu H., Guo J., Du C., Zhang Z., Wei Y., Li J., Zhang S.	OsSLA1 functions in leaf angle regulation by enhancing the interaction between OsBRI1 and OsBAK1 in rice.	Plant J.	110(4)	1111-1127	2022	SG2,SLA1,D61	OsSERK1, SERK1, OsBAK1, BAK1, OsSERK1/OsBAK1, OsBISERK1, BISERK1, OsSerk1, OsBAK1-1, 08SG2/OsBAK1, 08SG2, OsSG2,OsSLA1,d61*, dwf42, d61, OsBRI1, OSBRI1, BRI1, Os BRI1, Osbri1, OsBRKq1, BRKq1
51377	35278106	Liu J., Shen Y., Cao H., He K., Chu Z., Li N.	OsbHLH057 targets the AATCA cis-element to regulate disease resistance and drought tolerance in rice.	Plant Cell Rep.	41(5)	1285-1299	2022		
51378	35336677	Yi Y., Peng Y., Song T., Lu S., Teng Z., Zheng Q., Zhao F., Meng S., Liu B., Peng Y., Chen G., Zhang J., Ye N.	NLP2-NR Module Associated NO Is Involved in Regulating Seed Germination in Rice under Salt Stress.	Plants (Basel)	11(6)		2022	NLP2,_,_,NCED1,_,ABA8OX1	OsNLP2,OsNIA2, NIA2, OsNR2, NR2, OsNR3, NR3, OsNR1.2, NR1.2,OsNR1, NR1, nia1, OsNIA1, NIA1, OsNIA2, NIA2,OSNCED1, OsNCED-1, OsNCED3, OsNced3, NCED3, OsNCED9, NCED9,OsNIA1, OsNia1, NIA1, Nia1, OsNR, NR, OsNR2, NR2, NIA2,OsABA8OX1, CYP707A5, OsCYP707A5, ABA8ox1, OsABA8ox1, OsABA8'OH1, ABA8'OH1 
51379	35328636	Sun Y., Wang B., Ren J., Zhou Y., Han Y., Niu S., Zhang Y., Shi Y., Zhou J., Yang C., Ma X., Liu X., Luo Y., Jin C., Luo J.	OsbZIP18, a Positive Regulator of Serotonin Biosynthesis, Negatively Controls the UV-B Tolerance in Rice.	Int J Mol Sci	23(6)		2022	SL,TDC1,BZIP18,BZIP1,TDC3,BZIP48	OsSL, sl (spl1), sl*, sl, spl1, CYP71P1, Os CYP71P1, T5H, OsT5H, CYP71A1, OsCYP71A1, OsLLM1, LLM1, LLM1/OsSL, ELL1, OsELL1, ELL1/SL, OsT5H1,OsTDC, TDC, TDC2, OsTDC1, OsTDC4,OsbZIP18,OsbZIP01, bZIP01, OsbZIP1, OsRE1, RE1,OsTDC3, OsTDC5,OsbZIP48, OsHY5, HY5
51380	35239255	Mao D., Tao S., Li X., Gao D., Tang M., Liu C., Wu D., Bai L., He Z., Wang X., Yang L., Zhu Y., Zhang D., Zhang W., Chen C.	The Harbinger transposon-derived gene PANDA epigenetically coordinates panicle number AND grain size in rice.	Plant Biotechnol. J.	20(6)	1154-1166	2022	POW1,ERF112,CCP1,MSI1,MADS22,MADS55,FIE2	OsPOW1, PANDA, OsPANDA, HPY1, OsHPY1, OsHARBI1-22, HARBI1-22,OsERF#112, OsERF112, AP2/EREBP#009, AP2/EREBP9, SKL3, OsSKL3, SKL3-1, SKL3-2, SKL3-3, SKL3-1C9285, SKL3-2Nipponbare, SKL3-3C9285,DFO1, EMF1, OsDFO1, OsEMF1, OsCCP1,OsWD40-79, OsMSI1, WD40-79,  OsDWD1, DWD1,OsMADS22, RMD1, DLN68, OsDLN68,OsMADS55, DLN163, OsDLN163,OsFIE2, FIE, OsWD40-153,  OsDWD46, DWD46
51381	34893892	Huang S., Konishi N., Yamaji N., Shao J.F., Mitani-Ueno N., Ma J.F.	Boron uptake in rice is regulated post-translationally via a clathrin-independent pathway.	Plant Physiol.	188(3)	1649-1664	2022		
51382	35390443	Das A., Moin M., Sahu A., Kshattry M., Kirti P.B., Barah P.	Time-course transcriptome analysis identifies rewiring patterns of transcriptional regulatory networks in rice under Rhizoctonia solani infection.	Gene	828	146468	2022		
51383	35143673	Liu J., Zhang S., Xie P., Wang L., Xue J.Y., Zhang Y., Lu R., Hang Y., Wang Y., Sun X.	Fitness benefits play a vital role in the retention of the Pi-ta susceptible alleles.	Genetics	220(4)		2022		
51384	35315196	Guo X., Fu Y., Lee Y.J., Chern M., Li M., Cheng M., Dong H., Yuan Z., Gui L., Yin J., Qing H., Zhang C., Pu Z., Liu Y., Li W., Li W., Qi P., Chen G., Jiang Q., Ma J., Chen X., Wei Y., Zheng Y., Wu Y., Liu B., Wang J.	The PGS1 basic helix-loop-helix protein regulates Fl3 to impact seed growth and grain yield in cereals.	Plant Biotechnol. J.	20(7)	1311-1326	2022	FL3	OsFL3
51385	35404523	Liu X., Tian Y., Chi W., Zhang H., Yu J., Chen G., Wu W., Jiang X., Wang S., Lin Z., Xuan W., Ye J., Wang B., Liu Y., Sun Z., Xu D., Wang C., Wan J.	Alternative splicing of OsGS1;1 affects nitrogen-use efficiency, grain development, and amylose content in rice.	Plant J.	110(6)	1751-1762	2022		
51386	35643617	Shin W.J., Nam A.H., Kim J.Y., Kwak J.S., Song J.T., Seo H.S.	Intronic long noncoding RNA, RICE FLOWERING ASSOCIATED (RIFLA), regulates OsMADS56-mediated flowering in rice.	Plant Sci.	320	111278	2022	RFT1,IEZ1,HD3A,RIFLA,MADS56	FT-L 3, OsFTL3, FTL3, FT-L3, RFT, OsRFT1,OsiEZ1, OsSET1, SET1, iEZ1, OsEZ1/OsiEZ1, OsEZ1, EZ1, ez1, OsSET15, SDG718, DLN84, OsDLN84,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,OsRIFLA,OsMADS56, FDRMADS8, RMADS214
51387	35084453	Li M., Zhang H., He D., Damaris R.N., Yang P.	A stress-associated protein OsSAP8 modulates gibberellic acid biosynthesis by reducing the promotive effect of transcription factor OsbZIP58 on OsKO2.	J. Exp. Bot.	73(8)	2420-2433	2022		
51388	35625406	Han Y., Wang Y., Zhai Y., Wen Z., Liu J., Xi C., Zhao H., Wang Y., Han S.	OsOSCA1.1 Mediates Hyperosmolality and Salt Stress Sensing in <i>Oryza sativa</i>.	Biology (Basel)	11(5)		2022	OSCA1.1	OsOSCA1.1, OsIOSCA1.1, OsDDP1, DDP1, OsDDP1.1, OsDDP1.2, OsDDP1.3, OsDDP1.4
51389	35498720	Kawai T., Akahoshi R., Shelley I.J., Kojima T., Sato M., Tsuji H., Inukai Y.	Auxin Distribution in Lateral Root Primordium Development Affects the Size and Lateral Root Diameter of Rice.	Front Plant Sci	13	834378	2022	DRP3B,PIN1B,WOX10,DRP4B,ARF7A,DRP2C,IAA31,DRP5A,DRP1B,ARC5,DRP4A,DRP2A,DRP3A,DJLM,BC3,DRP1A,DRP1C,DRP1D	OsDRP3B,PIN1A, OsPIN1A, OsPIN1a, REH1, OsPIN1, OsPIN1b, REH1/OsPIN1,OsWOX10, Os WOX10, OsWOX11/12, OsWOX11,OsDRP4B,OsARF7a, OsARF19, ARF19, OsARF7,OsDRP2C,OsIAA3, IAA3, OsIAA31, OsIAA30, IAA30,OsDRP5A,OsDRP1B,OsARC5, Os ARC5, OsDRP5B, DRP5B,OsDRP4A,OsDRP2A,OsDRP3A,DJ-LM, OsDRP1E, DRP1E ,bc3, bc-3, OsDRP2B, DRP2B,OsDRP1A,OsDRP1C,OsDRP1C, DRP1C, OsDRP1D
51390	35288933	Wang W., Ye J., Xu H., Liu X., Fu Y., Zhang H., Rouached H., Whelan J., Shen Z., Zheng L.	OsbHLH061 links TOPLESS/TOPLESS-RELATED repressor proteins with POSITIVE REGULATOR OF IRON HOMEOSTASIS 1 to maintain iron homeostasis in rice.	New Phytol.	234(5)	1753-1769	2022		
51391	35322500	Guo H., Cui Y., Huang L., Ge L., Xu X., Xue D., Tang M., Zheng J., Yi Y., Chen L.	The RNA binding protein OsLa influences grain and anther development in rice.	Plant J.	110(5)	1397-1414	2022	EIF6,LA2,LA1	eIF-6, OseIF6, OseIF6.1, eIF6.1,OsLa2,OsLa1
51392	35643602	Luo J., Huang W., Yan J., Fang Z., Ren M.	The GzMYB-7D1 gene of Guizimai No.1 wheat is essential for seed anthocyanins accumulation and yield regulation.	Plant Sci.	320	111293	2022		
51393	35562972	Sun B., Shang L., Li Y., Zhang Q., Chu Z., He S., Yang W., Ding X.	Ectopic Expression of OsJAZs Alters Plant Defense and Development.	Int J Mol Sci	23(9)		2022	EG2,TIFY11C,TIFY9,TIFY10B,TIFY11A,TIFY11D,TIFY10C,TIFY6A,TIFY6B,TIFY11E,TIFY11B,TIFY10A	OsTIFY3, OsJAZ10, OsJAZ 1, OsJAZ1, JAZ1, EG2/OsJAZ1, EG2, JAZ1/EG2,OsJAZ2, JAZ2, OsJAZ 11, OsJAZ11, Os-JAZ11, JAZ11, OsTIFY11c, OsJAZ1, JAZ1,OsJAZ11, OsJAZ5, OsTIFY9, JAZ11, JAZ5, JAZ11/TIFY9 ,OsJAZ6, OsJAZ 7, OsJAZ7, OsTIFY10B, JAZ6, JAZ7,OsJAZ3, JAZ3, OsJAZ 9, OsJAZ9, Os-JAZ9, JAZ9, OsTIFY11a, OsJAZ6, JAZ6,OsTIFY11d, OsJAZ1, JAZ1, OsJAZ 12, OsJAZ12, JAZ12,OsJAZ7, JAZ7, OsJAZ 8, OsJAZ8, Os-JAZ8, JAZ8, OsTIFY10c, OsTIFY10c/OsJAZ8,OsJAZ9, OsJAZ 3, OsJAZ3, JAZ9, JAZ3, OsTIFY6a,OsJAZ8, JAZ8, OsJAZ 4, OsJAZ4, JAZ4, OsTIFY6b, OsJAZ4-2, JAZ4-2. OsJAZ3, JAZ3,OsJAZ 13, OsJAZ13,JAZ13, OsTIFY11e, OsJAZ13a, OsJAZ13b, OsJAZ13c, OsJAZ13d,OsJAZ4, JAZ4, OsJAZ 10, OsJAZ10, JAZ10, OsTIFY11b,OsJAZ5, JAZ5, JAZ6, OsJAZ6, OsTIFY10A
51394	35306663	Zheng S., Dong J., Lu J., Li J., Jiang D., Yu H., Ye S., Bu W., Liu Z., Zhou H., Ding Y., Zhuang C.	A cytosolic pentatricopeptide repeat protein is essential for tapetal plastid development by regulating OsGLK1 transcript levels in rice.	New Phytol.	234(5)	1678-1695	2022	GLK1,CPPR1	OsGLK1, OsGlk1, GLK1,OsCPPR1
51395	35440626	Wu L., Jing X., Zhang B., Chen S., Xu R., Duan P., Zou D., Huang S., Zhou T., An C., Luo Y., Li Y.	A natural allele of OsMS1 responds to temperature changes and confers thermosensitive genic male sterility.	Nat Commun	13(1)	2055	2022	EAT1,CP1,PTC1,C6,TDR	OsEAT1, OsbHLH141, EAT1/DTD1, bHLH141, DTD1, DTD, DLN120, OsDLN120,OsCP1, Os CP1,OsMS1, tms9-1, OsPTC1, MS1, TMS9-1, OsTMS9-1,Osc6, Osg6B, OsG6B, OsLTPG25, OsLTPg25, OsLtpVII.1, Os C6,tdr, OsbHLH005, bHLH005, OsbHLH5, bhlh5, TDR1, OsTDR, OsTDR1, OsMYC5, MYC5
51396	35481141	Liu C.C., Liu Y.N., Cheng J.F., Guo R., Tian L., Wang B.	Dual Roles of <i>OsGH3.2</i> in Modulating Rice Root Morphology and Affecting Arbuscular Mycorrhizal Symbiosis.	Front Plant Sci	13	853435	2022	D17,PT11,GH3-2,FBOX206	d17(t), dwf14, d17, htd1, OsCCD7, CCD7, D17/HTD1, HTD1, OsHTD1, OsD17,OsPT11, PHT1-11, OsPht1;11, ORYsa;PHT1;11,OsGH3-2, OsGH3.2, GH3.2,OsAFB2, ABF2, OsAFB2-1, OsAFB2-2, OsFbox206, Os_F0492, OsTIR1, TIR1,  OsFBL16, FBL16
51397	35498655	Lee Y.J., Kim J.K., Baek S.A., Yu J.S., You M.K., Ha S.H.	Differential Regulation of an OsIspH1, the Functional 4-Hydroxy-3-Methylbut-2-Enyl Diphosphate Reductase, for Photosynthetic Pigment Biosynthesis in Rice Leaves and Seeds.	Front Plant Sci	13	861036	2022	HDR2,LAS1	OsHDR2, OsIspH2, IspH2,HDR, OsHDR, OsIspH, IspH, OsHDR1, HDR1, OsLAS1, LAS1/OsHMBPP, OsHMBPP, HMBPP, OsIspH1, IspH1, YGL3, OsYGL3
51398	35392815	Yang X., Gu X., Ding J., Yao L., Gao X., Zhang M., Meng Q., Wei S., Fu J.	Gene expression analysis of resistant and susceptible rice cultivars to sheath blight after inoculation with Rhizoctonia solani.	BMC Genomics	23(1)	278	2022	BZIP63,_,WRKY24,PR1A,NH1,PR1B,PAL1,PAL,SAPK10,_,_,WRKY30,NH3,SAPK9,PAL1,WRKY70,WRKY53	OsbZIP63, rTGA2.1, OsrTGA2.1, OsbZIP20, bZIP20,OsPAL07, OsPAL, PAL07, OsPAL6, PAL6, PAL1, OsPAL7, PAL7,OsWRKY24,OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1, OsPR1b, PR1alpha, OsPR1alpha,OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2, DLN5, OsDLN5,  OsBTBA1, BTBA1,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1, OsPR1a, PR1a,OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6,OsPAL, OsPAL08, PAL2, GP-28, GP28, PAL08, OsPAL2, OsPAL8, PAL8,OsSAPK10, OsSnRK2.10, SnRK2.10,OsPAL03, OsPAL9, TAM1, OsTAM1, TAM, OsTAM,OsPAL05, PAL05, OsPAL3, PAL5, PAL3, OsPAL2;3, PAL2;3, OsPAL2-1, PAL2-1,OsWRKY30,OsNPR3, OsNH3, NPR3, OsNPR3.1, OsNPR3.2, OsNPR3.3 ,  OsBTBA4, BTBA4, OsNPR4, NPR4,OsSAPK9, OsSnRK2.9, SnRK2.9,OsPAL, Pal1*, Pal1, PAL, Pal_1, PalI, PAL2, OsPAL01, PAL01, OSPAL, CP-1, GP-1, OsPAL1, PAL3, OsPAL3,OsWRKY70,OsWRKY53, WRKY-53
51399	35418703	Guo Z., Cai L., Liu C., Chen Z., Guan S., Ma W., Pan G.	Low-temperature stress affects reactive oxygen species, osmotic adjustment substances, and antioxidants in rice (Oryza sativa L.) at the reproductive stage.	Sci Rep	12(1)	6224	2022	NCA1A,ATP6,MKK6,NOE1,APX1	OsCOIN, COIN, OsNCA1a, NCA1a,  OsRING1, RING1,atp6, OsPOX1, prx3, POX1,OsMKK6, OsMEK1, MEK1, OsMAPKK6, MAPKK6, OsMPKK6, MPKK6, OsMAP1, MAP1,CATC, OsCat, OsCatC, OsCATC, OsNOE1, noe1, catC, OsCATC, CAT3, OsCAT3, LLM9428, OsLLM9428,OsAPX1, APXa, OsAPXa, OsAPx01, OsAPx1, OSAPX1, APx1, cAPX, APX2, cAPXa, OscAPXa
51400	35457263	Wang F., Tang Z., Wang Y., Fu J., Yang W., Wang S., Wang Y., Bai T., Huang Z., Yin H., Wang Z.	<i>Leaf Mutant 7</i> Encoding Heat Shock Protein <i>OsHSP40</i> Regulates leaf size in Rice.	Int J Mol Sci	23(8)		2022	NAL11	OsDjC58, DjC58, OsHSP40, HSP40, LM7, OsLM7
51401	35293133	Wang L., Chen J., Zhao Y., Wang S., Yuan M.	OsMAPK6 phosphorylates a zinc finger protein OsLIC to promote downstream OsWRKY30 for rice resistance to bacterial blight and leaf streak.	J Integr Plant Biol	64(5)	1116-1130	2022		
51402	35315188	He Y., Chen S., Liu K., Chen Y., Cheng Y., Zeng P., Zhu P., Xie T., Chen S., Zhang H., Cheng J.	OsHIPL1, a hedgehog-interacting protein-like 1 protein, increases seed vigour in rice.	Plant Biotechnol. J.	20(7)	1346-1362	2022	HIPL1,BZIP72,VP1,NCED1,NCED1,PIP1A,ABA1,NCED2,ABA8OX3	OsHIPL1,OsbZIP72, OsAREB2, OsABF4, ABF4, Osbzip72, OsABI5, ABI5,Vp1* (OSVP1), OsVP1, OsVp1, Vp1, ABI3, OsABI3, OsLFL4, OsVp-1, OSVP1,OsNCED1, OsCCD4a, CCD4a,OSNCED1, OsNCED-1, OsNCED3, OsNced3, NCED3, OsNCED9, NCED9,OsPIP1a, OsPIP1;1, PIP1a, RWC-1, PIP1-1, RWC1, OsPIP1-1, PIP1;1, PIP1-5,OsABA1, Zep1, OsAba1, Aba2, OsAba2, OsZep1, Zep, OsZep, Aba1, OsABA2, Osaba1, OsZEP-1, OsZEP, OSZEP1, ZEP1, ZEP,OSNCED2, OsNCED2, OsNCED5, NCED5,OsABA8OX3, OsABA8ox3, CYP707A7, OsCYP707A7, OsAba-ox3, OsABA8ox3, OsABA8'ox3, ABA8'ox3, OsABAX3, ABAX3, OsABA8'OH3, ABA8'OH3
51403	35468979	Yu N., Liang Y., Wang Q., Peng X., He Z., Hou X.	Transcriptomic analysis of OsRUS1 overexpression rice lines with rapid and dynamic leaf rolling morphology.	Sci Rep	12(1)	6736	2022	PSBR,IAA6,PSAO,PIN5A,RUS1,LOX1,CK1,RAB16A,DHN1,ABCG5,NHX1,LEA3-1,PDR4,RAB16B,RR2,HKT1,_	PsbR, OsPsbR1, PsbR1, OsPSBR,OsIAA6,OsPSAO, PsaO,OsPIN5a, OsPIN6,OsRUS1,OsLOX1, OsLOX5, OsLOX2, LOX2,OsCK1, CIPK31, OsCIPK31, Os-CIPK3, OsSnRK3.11, SnRK3.11,Rab16A, rab21, RAB21, OsRab21, OsRAB21, OsRAB-21, OsRab16A, OsLEA29, rab16A, OsRAB16A,LIP9, OsLIP9, lip9, DHN1, DIP1, OsDip1, OsLEA23, OsDhn1, COR410, OsLEA23/DIP1, DIP1/OsLEA23,OsABCG5,OsNHX1, OcNHX1, OgNHX1, OrNHX1, OpNHX1, ObNHX1,OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3, OsLEA3A, LEA3A,OsABCG40, ABCG40, OsPDR4,rab21, OsLEA28, OsRAB16D, OsRab16d, Rab16d, OsRAB16b, XERO1, OsXERO1, OsRD22, RD22,rr2, Osrr2, OsRR2, Rra10, OsRRA10,OsHKT1, OsHKT2;1, HKT2;1, Ni (Nipponbare)-OsHKT1, Po (Pokkali)-HKT1, OsHKT1;1, HKT1;1,
51404	35498659	Prakash S., Rai R., Zamzam M., Ahmad O., Peesapati R., Vijayraghavan U.	OsbZIP47 Is an Integrator for Meristem Regulators During Rice Plant Growth and Development.	Front Plant Sci	13	865928	2022	RFL,FON2,CLE402,SPW1,OSH1,SBI,APO1,BZIP47,LHS1,YUCCA6,YUCCA7,DL,GNP1	RFL, OSL, FL, APO2, APO2/RFL, SSC, SSC/RFL/APO2, OsRFL, OsFL, OsAPO2, OsSSC,fon2, OsFON2, FON4, OsFON4, FON2/FON4, TG1,FCP1,OsFCP1,  FCP1/Os CLE402, Os CLE402, OsCLE402,SPW1, spw1, MADS16, OsMADS16,OSKN1, Oskn1, OsKN1, OSH1/Oskn1, HB75,GA2OX4, OsGA2ox4, ga2ox 4, OsGA2ox-4, OsSBI,apo1(t), apo1, SCM2, SCM2/APO1, OsFbox321, Os_F0393, Pbl6/APO1, Pbl6, OsPbl6,  OsFBX202, FBX202,OsbZIP47,OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO, OsLHS1, OsLG3b, LG3b, qLGY3, LGY3, DLN80, OsDLN80, OLR, OsOLR, GW3p6, OsGW3p6, OsMADS1GW3p6, MADS1GW3p6, qLGY3/OsLG3b/GW3p6,OsYUCCA6, OsYUC6, YUC6,OsYUCCA7, OsYUC7, OsYUC5, YUC5, YUC7,OsDL, dl(lop), lop, dl, dl1, OsDRPq3, DRPq3,GA20OX1, OsGA20ox1, 20ox1, GA20ox-1, ga20ox1, Os20ox, C20OX2, OsGA20ox2, OsGA20ox-1, GA20ox1, OsGNP1
51405	35394681	Zhang Y., Yu Q., Gao S., Yu N., Zhao L., Wang J., Zhao J., Huang P., Yao L., Wang M., Zhang K.	Disruption of the primary salicylic acid hydroxylases in rice enhances broad-spectrum resistance against pathogens.	Plant Cell Environ.	45(7)	2211-2225	2022		
51406	35457060	Sun Z., Liu X., Zhu W., Lin H., Chen X., Li Y., Ye W., Yin Z.	Molecular Traits and Functional Exploration of <i>BES1</i> Gene Family in Plants.	Int J Mol Sci	23(8)		2022	BZR2,BES1-1,BMY10 ,BZR1,BZR4,BZR3	OsBZR2, OsBES1-2, BES1-2,OsBES1-1,OsBMY10, OsBES1-3, BES1-3,OsBZR1, Os BZR1, OsBES1-6, BES1-6,OsBZR4, OsBES1-4, BES1-4,OsBZR3, OsBES1-5, BES1-5
51407	35381198	Gong X., Huang Y., Liang Y., Yuan Y., Liu Y., Han T., Li S., Gao H., Lv B., Huang X., Linster E., Wang Y., Wirtz M., Wang Y.	OsHYPK-mediated protein N-terminal acetylation coordinates plant development and abiotic stress responses in rice.	Mol Plant	15(4)	740-754	2022	HYPK,NAA15,NAA10	OsHYPK,OsNAA15, HHC4, OsHHC4,OsNAA10
51408	35481134	Guo X., Chen J., Gao M., Li D.	An Aminobutyric Acid Transaminase in <i>Zea mays</i> Interacts With <i>Rhizoctonia solani</i> Cellulase to Participate in Disease Resistance.	Front Plant Sci	13	860170	2022	GABA-T	Osl2, l2, OsGABA-T
51409	35212455	Lin L., Du M., Li S., Sun C., Wu F., Deng L., Chen Q., Li C.	Mediator complex subunit MED25 physically interacts with DST to regulate spikelet number in rice.	J Integr Plant Biol	64(4)	871-883	2022		
51410	35456930	Que F., Liu Q., Zha R., Xiong A., Wei Q.	Genome-Wide Identification, Expansion, and Evolution Analysis of Homeobox Gene Family Reveals TALE Genes Important for Secondary Cell Wall Biosynthesis in Moso Bamboo (<i>Phyllostachys edulis</i>).	Int J Mol Sci	23(8)		2022		
51411	35576156	Liu H., Lu C., Li Y., Wu T., Zhang B., Liu B., Feng W., Xu Q., Dong H., He S., Chu Z., Ding X.	The bacterial effector AvrRxo1 inhibits vitamin B6 biosynthesis to promote infection in rice.	Plant Commun	3(3)	100324	2022	PDX1.3C,ABA3,PDX1.3A,PDX1.3B	OsPDX1.3c, OsPDX1.3, PDX1.3,OsABA3, OsMoCo, MoCo,OsPDX1.3a, OsPDX1.1, PDX1.1,OsPDX1.3b, OsPDX1.2, PDX1.2
51412	35104839	Ruan N., Dang Z., Wang M., Cao L., Wang Y., Liu S., Tang Y., Huang Y., Zhang Q., Xu Q., Chen W., Li F.	FRAGILE CULM 18 encodes a UDP-glucuronic acid decarboxylase required for xylan biosynthesis and plant growth in rice.	J. Exp. Bot.	73(8)	2320-2335	2022		
51413	35406957	Zhao W., Xiao W., Sun J., Chen M., Ma M., Cao Y., Cen W., Li R., Luo J.	An Integration of MicroRNA and Transcriptome Sequencing Analysis Reveal Regulatory Roles of miRNAs in Response to Chilling Stress in Wild Rice.	Plants (Basel)	11(7)		2022	MIR319B,MIR1846B,MIR166H,HEME,HDY1,MIR818D,_,MIR159A,GAUT17,MIR166K,MIR408,MIR166N,MIR1850,MIR1846A,GSTU17,_,AOX1B,STN8,GL1-11,ACO1,MIR166G,ASA2,MIR398B,MIR169I,MIR5340,MIR166L	OsmiR319b, Osa-miR319b,miR1846b, osa-miR1846b, osa-MIR1846bosa-miR1846b-5p,miR166h, osa-miR166hosa-miR166h-3p osa-miR166h-5p,OsHEME, hemE, OshemE,OsFdC2, FdC2, OsHDY1, PetF-2,miR818d, osa-miR818d, osa-MIR818d,,miR159a, osa-miR159a, osa-MIR159a, OsmiR159a, OsmiR159a.2, miR159a.2, OsmiR159a.1, miR159a.1, osa-miR159a.1, osa-miR159a.2,OsGAUT17,miR166k, osa-miR166kosa-miR166k-3p osa-miR166k-5p,miR408, osa-MIR408osa-miR408 osa-miR408-3p osa-miR408-5p, OsMIR408 ,miR166n, osa-miR166n, osa-MIR166n, miR166j, osa-miR166j, osa-MIR166j, osa-miR166j-3p, osa-miR166j-5p,miR1850, osa-miR1850, osa-MIR1850, osa-miR1850.1, osa-miR1850.2, osa-miR1850.3,miR1846a, osa-miR1846a, osa-MIR1846aosa-miR1846a-5p,OsGSTU17, OsGST23, GST23 ,,AOX1b, OsAOX1b,OsSTN8,OsGL1-11,OsACO1, ACO,miR166g, osa-miR166gosa-miR166g-3p osa-miR166g-5p,OASA2 (=ASA2), OsASA2, OASA2, ASalpha2, OsASalpha2, OASA2,miR398b, osa-miR398b, osa-MIR398b, OsmiR398b,miR169i, osa-miR169i, osa-MIR169iosa-miR169i-3p osa-miR169i-5p.2,miR5340, osa-miR5340, osa-MIR5340,miR166l, osa-miR166losa-miR166l-3p osa-miR166l-5p
51414	35498697	Wang Z., Tao S., Liu S., Jia M., Cui D., Sun G., Deng Z., Wang F., Kong X., Fu M., Che Y., Liao R., Li T., Geng S., Mao L., Li A.	A Multi-Omics Approach for Rapid Identification of Large Genomic Lesions at the <i>Wheat Dense Spike</i> (<i>wds</i>) Locus.	Front Plant Sci	13	850302	2022		
51415	35293072	Chen Q., Tian F., Cheng T., Jiang J., Zhu G., Gao Z., Lin H., Hu J., Qian Q., Fang X., Chen F.	Translational repression of FZP mediated by CU-rich element/OsPTB interactions modulates panicle development in rice.	Plant J.	110(5)	1319-1331	2022	PTB1,FZP,RBP61	OsPTB1,fzp*, fzp, OsBD1, BD1, OsERF#078, OsERF078, OsERF78, ERF78, AP2/EREBP#133, AP2/EREBP133, BFL1, SGDP7, OsSGDP7,RBP-61, OsRBP61, OsPTB2, PTB2
51416	35592486	Krishnamurthy S.L., Sharma P.C., Dewan D., Lokeshkumar B.M., Rathor S., Warraich A.S., Vinaykumar N.M., Leung H., Singh R.K.	Genome wide association study of MAGIC population reveals a novel QTL for salinity and sodicity tolerance in rice.	Physiol Mol Biol Plants	28(4)	819-835	2022		
51417	35462194	Li K., Wang C., Ow D.W.	Root microbiome changes associated with cadmium exposure and/or overexpression of a transgene that reduces Cd content in rice.	Ecotoxicol. Environ. Saf.	237	113530	2022		
51418	35348292	Ni L., Wang Q., Chen C., Wang S., Shen T., Jiang J., Cui Z., Li K., Yang Q., Jiang M.	OsDMI3-mediated OsUXS3 phosphorylation improves oxidative stress tolerance by modulating OsCATB protein abundance in rice.	J Integr Plant Biol	64(5)	1087-1101	2022		
51419	35643224	Qiao Y., Jie Chen Z., Liu J., Nan Z., Yang H.	Genome-wide identification of Oryza sativa: A new insight for advanced analysis of ABC transporter genes associated with the degradation of four pesticides.	Gene	834	146613	2022		
51420	35640569	Guo M., Zhang Y., Jia X., Wang X., Zhang Y., Liu J., Yang Q., Ruan W., Yi K.	Alternative splicing of REGULATOR OF LEAF INCLINATION 1 modulates phosphate starvation signaling and plant growth.	Plant Cell			2022		
51421	35512208	Wei H., Xu H., Su C., Wang X., Wang L.	Rice CIRCADIAN CLOCK ASSOCIATED1 transcriptionally regulates ABA signaling to confer multiple abiotic stress tolerance.	Plant Physiol.			2022		
51422	35668795	Sun Y., Zhang P.T., Kou D.R., Han Y.C., Fang J.C., Ni J.P., Jiang B., Wang X., Zhang Y.J., Wang W., Kong X.D.	Terpene Synthases in Rice Pan-Genome and Their Responses to <i>Chilo suppressalis</i> Larvae Infesting.	Front Plant Sci	13	905982	2022	TPS29,CPS1,TPS12,KS2,KS6,STPS,KS5,TPS21,TPS19,_,TPS23,TPS37,KS3,_,TPS44,_,_,TPS17,KS1,TPS30,TPS22,TPS13,_,TPS42,_,_,TPS2 ,_,KS4,CPS2,TPS18,KS8,KS7,CPS4,TPS14,_,TPS43,TPS20,TPS24,CAD,TPS3,TPS25,_,TPS27,KSL10	OsTPS29, OsCAS, CAS, OsTPS3, TPS3, TPS33, OsTPS33,OsCPS1, OsCPS1ent, OsCPS, Os CPS1, OsTPS4, TPS4, TPS29, OsTPS29, OsCPS1-L, OsCPS1-S,OsTPS12, TPS34, OsTPS34,OsKS2, KSL2, OsKSL2, OsTPS27, TPS27, TPS2, OsTPS2,OsKS6, KS6, KSL6, OsKSL6, KS5, OsKS5, OsTPS9, TPS9, TPS14, OsTPS14,OsSTPS, OsSTPS2, STPS2, OsEBFS, EBFS, TPS5, OsTPS5,OsKS5, KS5, KSL5, OsKSL5, KSL5i, OsKSL5i, KSL5j, OsKSL5j, KS6, OsKS6, OsTPS8, TPS45, OsTPS45,OsTPS21, TPS1, OsTPS1,OsTPS19, TPS15, OsTPS15,OsTPS11, TPS11, TPS28, OsTPS28,OsTPS23, TPS19, OsTPS19,OsTPS37, CRPG15, OsCRPG15,OsKS3, OSKS3, KS3, KSL3, OsKSL3, OsKS2, KS2, OsTPS25, TPS39, OsTPS39,TPS10, OsTPS10,OsTPS1, TPS1, OsTPS44,OsTPS13, TPS13, TPS3, OsTPS3,TPS30, OsTPS30,OsTPS17, TPS32, OsTPS32,OsKS1, KS1, KS1A, KSL1, OsKSL1, OsKS1A, OsKS1B, OsKS1C, Ks1, Os KS1, OsTPS26, TPS6, OsTPS6,TPS, OsTPS30, TPS26, OsTPS26,OsTPS22, TPS18, OsTPS18,TPS3, OsSTP3, OsTPS28, TPS28, OsTPS13, TPS35, OsTPS35, OsECBS, ECBS,TPS4, OsTPS4,OsTPS42,OsTPS10, TPS10, TPS36, OsTPS36,TPS20, OsTPS20,OsTPS2, TPS40, OsTPS40,TPS9, OsTPS9,OsKS4, KS4, KSL4, OsKSL4, DTS2, OsDTS2, OsTPS16, TPS16, TPS8, OsTPS8,OsCPS2, cps2, OsCPS2ent, CYC2, OsCyc2, OsCYC2, OsCPSL1, cpsl1, OsCyc2/OsCPS2, OsTPS7, Os-CPS2, TPS13, OsTPS13,OsTPS18, TPS23, OsTPS23,OsKS8, KS8, KSL8, OsKSL8, DTC2, OsDTC2, OsDTC2/OsKS8, OsTPS32, TPS17, OsTPS17, KSL11, OsKSL11,OsKS7, KS7, KSL7, OsKSL7, DTC1, OsDTC1, OsKS3, OsDTC1/OsKS7, OsTPS6, TPS6, TPS38, OsTPS38,OsCPS4, CYC1, OsCYC1, OsCyc1, cpsl3, OsCPSL3, OsCPSsyn, OsCyc1/OsCPS4, OsTPS15, Os-CPS4, TPS11, OsTPS11,OsTPS14, TPS12, OsTPS12,OsTPS31, TPS31, OsSTPS, TPS46, tps46, OsTPS46, SSBis039, OsTPS10, TPS10, TPS7, OsTPS7,OsTPS43,OsTPS20, TPS41, OsTPS41,OsTPS24,OsCAD, TPS16, OsTPS16,OsTPS3, OsLIS, LIS, TPS22, OsTPS22,OsTPS25,TPS31, OsTPS31,OsTPS27,OsKSL10, KS10, OsKS10, OsTPS33, TPS33, TPS21, OsTPS21
51423	35403801	Liu C., Ma T., Yuan D., Zhou Y., Long Y., Li Z., Dong Z., Duan M., Yu D., Jing Y., Bai X., Wang Y., Hou Q., Liu S., Zhang J.S., Chen S.Y., Li D., Liu X., Li Z., Wang W., Li J., Wei X., Ma B., Wan X.	The OsEIL1-OsERF115-target gene regulatory module controls grain size and weight in rice.	Plant Biotechnol. J.	20(8)	1470-1486	2022	DLT,SCP45,GLN1;1,ERF44,D11,GW8,AGPL3,SSIIIB,GW2,D61,EIL1A,MFO1,BC14,TMT2,PUP7,SSIIB,SLG,ERF115,PPLAIIALPHA	dlt, OsGRAS32, OsDLT, OsDLT1, DTL1, OsGRAS-32, OsGRAS32, GRAS-32, GRAS32, SMOS2/DLT, SMOS2, OsSMOS2, OsGS6, GS6,OsSCP45, OsSCP46, SCP46,OsGLN1;1, GS1, RGS28, OsGS1;1, GS1;1, OsGS, GS1, OsGS1, GLN1-1, OsGS1-1, GS1-1, GS1.1, OsGS1.1,OsERF#044, OsERF044, OsERF44, AP2/EREBP#112, AP2/EREBP112, OsDREB2C, DREB2C, OsEnS-124,d11(d8), dwf10, d8, D11/CYP724B1, d11, CYP724B1, GNS4, OsD11, PMM1, OsPMM1, PMM1/D11, NBG4, OsCPB1, CPB1, CPB1/D11,SPL16, OsSPL16, SLP1, OsSLP1, qGW8, OsGW8,OsAGPL3, APL3, OsAPL3, AGPlar, OsAGPL1, AGPL1,OsSSIIIb. SSIII-1, SSIIIa,OsGW2, OsRING429, RING429, GNL44, OsGNL44,d61*, dwf42, d61, OsBRI1, OSBRI1, BRI1, Os BRI1, Osbri1, OsBRKq1, BRKq1,EIL1, OsEIL1, EIL1a, OsEIL1a, MHZ6/OsEIL1, MHZ6, OsMHZ6,OsMADS6, MADS6, OsMFO1,OsBC14, OsNST1, NST1,OsTMT2, AZT1, OsAZT1,OsPUP7,OsSSIIb, OsSSII-2, SSII-2, SS2, OsSSSIIb, SS2b,OsSLG,OsERF#115, OsERF115, AP2/EREBP#110, AP2/EREBP110, OsEnS-123,OsEnS-20, OspPLAIIalpha, pPLAIIalpha, PAT2, PAT
51424	35582630	Mehra P., Pandey B.K., Verma L., Prusty A., Singh A.P., Sharma S., Malik N., Bennett M.J., Parida S.K., Giri J., Tyagi A.K.	<i>OsJAZ11</i> regulates spikelet and seed development in rice.	Plant Direct	6(5)	e401	2022	FST ,MADS68,TIFY10A,BHLH9,TIFY10C,MADS2,AOS2,LHS1,TIFY11C,OPR2,OPR5,TIFY9,GW7,TIFY11D,OPR1	OsMADS29, MADS29, OsFST,OsMADS68,OsJAZ5, JAZ5, JAZ6, OsJAZ6, OsTIFY10A,OsbHLH009, bHLH009, OsMYC2, MYC2,OsJAZ7, JAZ7, OsJAZ 8, OsJAZ8, Os-JAZ8, JAZ8, OsTIFY10c, OsTIFY10c/OsJAZ8,OsMADS2, RMADS219, NMADS1, PI2, nmads1, DLN33, OsDLN33,OsAOS2, CYP74A2, OsAOS, OsAOS1,OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO, OsLHS1, OsLG3b, LG3b, qLGY3, LGY3, DLN80, OsDLN80, OLR, OsOLR, GW3p6, OsGW3p6, OsMADS1GW3p6, MADS1GW3p6, qLGY3/OsLG3b/GW3p6,OsJAZ2, JAZ2, OsJAZ 11, OsJAZ11, Os-JAZ11, JAZ11, OsTIFY11c, OsJAZ1, JAZ1,OsOPR2, OsOPR06-5,OsOPR5, OsOPR6, OsOPR06-2, OPR4,OsJAZ11, OsJAZ5, OsTIFY9, JAZ11, JAZ5, JAZ11/TIFY9 ,GL7, OsGL7, OsGW7, qGW7, qGL7, SLG7, GL7/GW7/SLG7, qPY7, GL7/SLG7, Chalk7, OsChalk7,OsTIFY11d, OsJAZ1, JAZ1, OsJAZ 12, OsJAZ12, JAZ12,OsOPR1, OsOPR2, OsOPR11, OsOPR06-6, OPDAR1, OsOPR, OPDAR
51425	35599895	Zhou J., Qiao J., Wang J., Quan R., Huang R., Qin H.	OsQHB Improves salt tolerance by Scavenging Reactive Oxygen Species in Rice.	Front Plant Sci	13	848891	2022	PRX5,PRX45,PRX135,QHB,PRX17,PRX39	prx5, OsPRX5, OsPRX9,prx45, OsPRX45, OsPRX2,Pox, prx135, OsPRX1, OsPRX4,OsQHB, OsWOX9, WOX9, WOX5, Os WOX5, OsWOX5, QHB/OsWOX9,prx17, OsPRX17, OsPRX72,prx39, OsPRX39, OsPRX-A2, PRX-A2, POD39, OsPOD39
51426	35411551	Tian Y., Zeng H., Wu J., Huang J., Gao Q., Tang D., Cai L., Liao Z., Wang Y., Liu X., Lin J.	Screening DHHCs of S-acylated proteins using an OsDHHC cDNA library and bimolecular fluorescence complementation in rice.	Plant J.	110(6)	1763-1780	2022	DLN232,NOA1,DHHC30,DHHC17,DHHC3,DHHC4,DHHC26,DHHC2,DHHC19,SUB1,DHHC8,ONAC2,DHHC13,DLN249,DHHC15,CBL2,DHHC1,TIP1,DHHC11,DHHC14,DHHC7,DHHC29,DHHC18,DHHC21,DHHC20,DHHC9,DHHC12,DHHC10,DHHC28,DHHC25,DHHC22,DHHC23,GSD1,CBL3,DHHC16	OsDLN232, OsDHHC24, DHHC24,OsNOA1,OsDHHC30,OsDHHC17,OsDHHC3, OsDHHC03, DHHC03,OsDHHC4, OsDHHC04, DHHC04,OsSTA261, OsDHHC26,OsDHHC2, OsDHHC02, DHHC02,OsDHHC19,OsSub1, OsDHHC01, DHHC01, OsDHHC1, DHHC1,OsDHHC8, OsDHHC08, DHHC08,SNAC1, snac1, OsNAC9, ONAC002, ONAC2, ONAC033, ONAC33, ONAC043, ONAC43, ONAC044, ONAC44, OsNAC19, NAC19, SNAC1/ONAC002, OsSNAC1, OsNAC9, OsNAC1,OsDHHC13,OsDLN249, OsDHHC27, DHHC27,OsDHHC15,OsCBL2,OsDHHC1, OsPAT15, PAT15, OsDHHC06, DHHC06, OsDHHC6, DHHC6,OsTIP1, OsDHHC05, DHHC05, OsDHHC5, DHHC5,OsDHHC11,OsDHHC14,OsDHHC7, OsDHHC07, DHHC07,OsDHHC29,OsDHHC18,OsDHHC21,OsDHHC20,OsDHHC9, OsDHHC09, DHHC09,OsDHHC12,OsDHHC10,OsDHHC28,OsDHHC25,OsDHHC22,OsDHHC23,OsREM6.6, REM6.6, OsGSD1,OsCBL3,OsDHHC16
51427	35403315	Si F., Yang C., Yan B., Yan W., Tang S., Yan Y., Cao X., Song X.	Control of OsARF3a by OsKANADI1 contributes to lemma development in rice.	Plant J.	110(6)	1717-1730	2022		
51428	35587579	Chen S., Xu K., Kong D., Wu L., Chen Q., Ma X., Ma S., Li T., Xie Q., Liu H., Luo L.	Ubiquitin ligase OsRINGzf1 regulates drought resistance by controlling the turnover of OsPIP2;1.	Plant Biotechnol. J.			2022	RINGZF1,PIP2A	OsRINGzf1,  OsRING34, RING34,OsPIP2a, PIP2-1, PIP2a, PIP2.1, OsPIP2;1, PIP2;1, OsPIP2-1
51429	35619157	Sahu K.P., Kumar A., Sakthivel K., Reddy B., Kumar M., Patel A., Sheoran N., Gopalakrishnan S., Prakash G., Rathour R., Gautam R.K.	Deciphering core phyllomicrobiome assemblage on rice genotypes grown in contrasting agroclimatic zones: implications for phyllomicrobiome engineering against blast disease.	Environ Microbiome	17(1)	28	2022	CERK1,PAD4,PR1-12,CAL1,NH2	OsCERK1, OsLysM-RLK9, Os-CERK1, Os-LysM-RLK9, OsLysMRLK9, OsCERK1/OsLYK9, OsLYK9, LYK9,OsPAD4,OsPR1#012, PR1#012, OsPR1-12, OsPR1.1, PR1.1,OsCPT1, CPT1, DEFL7, OsDEFL7, OsDf-07, Df-07, OsPR12, PR12, DEF7, OsDEF7, OsAFP1, AFP1, OsPDF2.2, PDF2.2,OsNH2, OsNPR2, NPR2, OsNPR2/NH2, DLN21, OsDLN21, PR2, OsNPR1, NPR1,  OsBTBA2, BTBA2, OsNPR3, NPR3
51430	35596038	Xin W., Liu H., Yang L., Ma T., Wang J., Zheng H., Liu W., Zou D.	BSA-Seq and Fine Linkage Mapping for the Identification of a Novel Locus (qPH9) for Mature plant height in Rice (Oryza sativa).	Rice (N Y)	15(1)	26	2022	PH9	OsH4, H4, OsPH9
51431	35592911	Tang Y., Wang M., Cao L., Dang Z., Ruan N., Wang Y., Huang Y., Wu J., Zhang M., Xu Z., Chen W., Li F., Xu Q.	OsUGE3-mediated cell wall polysaccharides accumulation improves biomass production, mechanical strength, and salt tolerance.	Plant Cell Environ.	45(8)	2492-2507	2022		
51432	35631784	Son S., Im J.H., Song G., Park S.R.	SNF1-Related protein kinase 1 Activity Represses the Canonical Translational Machinery.	Plants (Basel)	11(10)		2022	OSK1	osk1, SnRK1A, OsSnRK1A, OsSNRK1a, SnRK1A/OSK1, SnRK1a, OsSnRK1.2, SnRK1.2, OsSnRK1alphaA, SnRK1alphaA
51433	35622122	Liu H., Yang L., Xu S., Lyu M.J., Wang J., Wang H., Zheng H., Xin W., Liu J., Zou D.	OsWRKY115 on qCT7 links to cold tolerance in rice.	Theor. Appl. Genet.	135(7)	2353-2367	2022		
51434	35502736	Rehman O.U., Uzair M., Chao H., Fiaz S., Khan M.R., Chen M.	Role of the type-B authentic response regulator gene family in fragrant rice under alkaline salt stress.	Physiol Plant	174(3)	e13696	2022		
51435	35411594	Kobayashi T., Shinkawa H., Nagano A.J., Nishizawa N.K.	The basic leucine zipper transcription factor OsbZIP83 and the glutaredoxins OsGRX6 and OsGRX9 facilitate rice iron utilization under the control of OsHRZ ubiquitin ligases.	Plant J.	110(6)	1731-1750	2022		
51436	35625525	Panigrahy M., Panigrahi K.C.S., Poli Y., Ranga A., Majeed N.	Integrated Expression Analysis of Small RNA, Degradome and Microarray Reveals Complex Regulatory Action of miRNA during Prolonged Shade in Swarnaprabha Rice.	Biology (Basel)	11(5)		2022	MIR444D,MIR172B,MIR6245,DET1,MIR2275B,MIR169P,REM1.2,MIR529A,LOG1,GNS9,AP2/EREBP96,MIR5075,MIR5810,_,DJA5,MIR5493,ALDC2,NADP-ME1,_,MIR399B,DREPP2,MIR168B,WD40-24,MIR160B,COMTL2,CSLF9,TIFY11D,MIR414,MIR5144,BT1-1,MIR1439,FBOX6,PP2C34,MIR5487,ILI3	miR444d, osa-MIR444d, osa-miR444d, osa-miR444d.1, osa-miR444d.2, osa-miR444d.3,OsmiR172b, miR172b, osa-MIR172b, Osa-miR172b ,miR6245, osa-miR6245, osa-MIR6245,OsDET1,miR2275b, osa-miR2275b, osa-MIR2275b,miR169p, osa-miR169p, miR169-p,OsREM1.2,miR529a, Osa-miR529a, OsmiR529a,OsLOG1, LOG, Log, log, OsLOG,Gns9, OsGns9, OsPR8a, PR8a, OsBGL12, BGL12, BG12, OsBG12,AP2/EREBP#096, OsRAV12, RAV12, OsEREBP96, EREBP96,miR5075, osa-miR5075, osa-MIR5075,miR5810, osa-miR5810, osa-MIR5810,SLAC, OsSLAC,OsDjA5,miR5493, Osa-miR5493, OsmiR5493,GSC 233, AldC-2, OsAldC-2, OsFBA, FBA,NADP-ME, ME6, OschlME, chlME, XcrMal1,OsCP1, CP1,OsmiR399b, osa-MIR399b, miR399b,OsDREPP2,miR168b, osa-miR168b, osa-MIR168b,OsWD40-24, OsSPA3/4,  OsDWD75, DWD75,miR160b, osa-miR160b, osa-MIR160b, NolmiR-36osa-miR160b-3p osa-miR160b-5p, OsMIR160b,OsCOMTL2, OsCOMT3, COMT3,OsCslF9, OsCSLF9,OsTIFY11d, OsJAZ1, JAZ1, OsJAZ 12, OsJAZ12, JAZ12,miR414, osa-MIR414,miR5144, osa-miR5144, osa-MIR5144, MIR5144-5p, MIR5144-3posa-miR5144-3p osa-miR5144-5p,OsBT1-1, OsEnS-29, OsBT1, OsBt1, BT1, Bt1, OsBt1-1, shr3, OsBT1-2, BT1-2,miR1439, osa-miR1439, osa-MIR1439,OsFbox006, OsFbox6, Os_F0083, OsFBX5, OsSTA12,  OsFBX5, FBX5,OsPP2C34, OsPP55, OsBIPP2C2, OsBIPP2C2a, OsBIPP2C2b, OsBIPP2C2c,miR5487, osa-miR5487, osa-MIR5487,OsILI3, OsbHLH153, bHLH153, OsBUL2, BUL2
51437	35628116	Li G., Zeng X., Li Y., Li J., Huang X., Zhao D.	<i>BRITTLE CULM17</i>, a Novel Allele of <i>TAC4</i>, Affects the Mechanical Properties of Rice Plants.	Int J Mol Sci	23(10)		2022	TAC4,LAC17,LAC15,LAC12,LAC11,LAC29,LAC23,LAC7,LAC3,LAC8,LAC4,LAC9,LAC28,LAC22	OsTAC4, OsBC17, BC17,OsLAC17,OsLAC, LAC, OsLAC15, OsLAC13, LAC13 ,OsLAC12,Lac, OsLAC11, LAC10, OsLAC10,OsLAC29,OsLAC23, OsLAC19, LAC19,OsLAC7,OsChI1, ChI1, OsLAC3,OsLAC8, OsLAC7, LAC7,Oslacc, lacc, OsLAC4, OsLAC17, LAC17,OsLAC9,OsLAC28,OsLAC22
51438	35589923	Zhang J., Sun Y., Zhou Z., Zhang Y., Yang Y., Zan X., Li X., Wan J., Gao X., Chen R., Huang Z., Li L., Xu Z.	OsSCL30 overexpression reduces the tolerance of rice seedlings to low temperature, drought and salt.	Sci Rep	12(1)	8385	2022	NAC6,PRX22,SCL30B,CATA,SODCC2,SCL25,SCL28,DREB2A,SCL57,SCL30A,SCL26,RBOHA	OsNAC6, ONAC048, NAC48, SNAC2, SNAC2/OsNAC6, OsNAC6/ONAC048, OsSNAC2, SNAC-2, OsSNAC-2, OsNAC2,prx22, OsPRX22, OsPOD,OsSCL30, Os-SCL30, SCL30, OsSCL30b, Os-SCL30b,CATA1, Cat A1*, OSCAT-A, Cat2, CatA1, CAT-A, OsCatA, OsCAT, CAT, catA, OSCATA, OsCATc, OsCATA, OsCAT1A, CAT1, OsCAT1, OsCATC, OsCAT2,Cu/Zn-SOD, Cu/Zn- SOD, OsCu-ZnSOD2, Cu-ZnSOD2, OsSODB, OsSOD3, SodCc2, Os SodCc2, sodB, OsSodB, RSODB, OssodCc1, OsCSD1.1, CSD1.1, OsCDS1, OsSOD3-CU/Zn, SOD3-CU/Zn, CuZnSOD2, Cu/ZnSOD2, OsCu/ZnSOD2, OsCSD1, CSD1, CuZnSOD1, OsCuZnSOD2, OsCSD4, CSD4, OsCSD3, CSD3, Cu/Zn-SOD3,Os-SCL25, OsSCL25,Os-SCL28, OsSCL28,OsDREB2A, OsDREB2a, ERF40, OsERF#040, OsERF040, OsERF40, AP2/EREBP#167, AP2/EREBP167,Os-SCL57, OsSCL57,Os-SCL30a, OsSCL30a, SCL30a,Os-SCL26, OsSCL26,rbohA, OsrbohA, Os rbohA, OsRbohA, OsNox2, Nox2, OsRboh2, Rboh2
51439	35651773	Jin S.K., Zhang M.Q., Leng Y.J., Xu L.N., Jia S.W., Wang S.L., Song T., Wang R.A., Yang Q.Q., Tao T., Cai X.L., Gao J.P.	<i>OsNAC129</i> Regulates Seed Development and Plant Growth and Participates in the Brassinosteroid Signaling Pathway.	Front Plant Sci	13	905148	2022	ALK,SSIVB,ILI5,AGPS2,AGPL2,TID1,SBE3,NAC129,PHO1,EP2,AGPL1,SRS3,WX1,ILI6	alk, SSII-3, OsSSIIa, OsSSII-3, SSIIa, SSS2A, OsSSIIaChr6, SS2a,OsSSIVb, SSIV-2, OsSSIV-2, SSIVb, SSIV-2, SSIV2, OsSSIV2,ILI5, OsILI5, PGL2, OsPGL2, Os170, OsBUL1, BUL1, ILI5/PGL2, OsbHLH170, bHLH170,OsAGPS2a, AGPS2A, AGPS2B, OsAGPS2, osagps2, APS2, APS2a, APS2b, AGPS2a, APGS2b, OsAGPS2b, AGPP, GAS8, OsAPS2, OsAPS2a, OsAPS2b,OsAGPL2, osagpl2, APL2, OsAPL2, AGPiso, sh2, Sh2, GIF2, GAS1 ,OsTID1, TubA2, SRS5, OS-TubA2, OsTubA2, OsSRS5, ,SBEIII*, SBEIII, Sbe3, RBE3, QEIIa, QEIIA, BEIIb, BEIIB, SBEIIb, OsBEIIb, sbe3, SBE III, OsSBEIIb, SBEIIb,ONAC129, OsNAC129 ,Pho1, OsPho1, OsPHOL, PHOL, OsPHOI, PHOI,ep2, EP2/DEP2/SRS1, SRS1/DEP2, DEP2, SRS1, OsSRS1, CL7(t), OsRELA, RELA,OsAGPL1, OsAPL1, APL1, OsAGPL3, AGPL3, OsAGPSL3, AGPSL3,OsSRS3, SAR1, OsSAR1, KIN13A, OsKIN13A,wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx,ILI6, OsILI6, PGL1, OsPGL1
51440	35682882	Wang R.Y., Liu L.H., Zhao F.J., Huang X.Y.	Local and Systemic Response to Heterogeneous Sulfate Resupply after Sulfur Deficiency in Rice.	Int J Mol Sci	23(11)		2022	SULTR4;1,ASTOL1,SULTR1;2,SDI2,SAT2;1,SULTR3;6,SDI1,APRL1,SHMT3,SULTR3;1,_,_,_,SULTR2;2,APK,SULTR2;1,_,_,CAS,SAT2;2,SULTR1;1,SULTR3;4,ATPS,CBSX5	OsSultr4;1, OsSul4;1, OsSultr4;1(a), OsSultr4;1(b), OsSultr4;1(c), OsSultr4;1(d),RCS1, rcs1, OsOASTL-A2, OASTL-A2, OsASTOL1,OsSultr1;2, OsSul1;2,OsSDI2,OsSAT2;1,OsSultr3;6, OsSul3;6, OsSULTR3;6 ,OsSDI1,OsAPRL1, OsAPR1, APR1,OsSHM3, SHM3, OsSHMT3, OsSHTM5, SHTM5,OsSultr3;1, OsSul3;1,OsOAS-TL , OAS-TL ,OsOAS-TL , OAS-TL ,OsOAS-TL , OAS-TL ,OsSultr2;2, OsSul2;2, OsaSULTR2;1, SULTR2;1, OsSULTR2;1,OsAPK,OsSultr2;1, OsSul2;1, OsaSULTR2, SULTR2,OsATPS, ATPS,,OsCAS, OAS-TL,OsSAT2;2,OsSultr1;1, OsSul1;1, Sul1;1, OsSultr1;1(a), OsSultr1;1(b),OsSultr3;4, OsSul3;4, OsaSULTR3;4, SPDT, OsSPDT,OsATPS, OsaATPS, PAPSS,OsCBSX5
51441	35628368	Doucour? H., Auguy F., Blanvillain-Baufum? S., Fabre S., Gabriel M., Thomas E., Dambreville F., Sciallano C., Szurek B., Koita O., Verdier V., Cunnac S.	The Rice <i>ILI2</i> Locus Is a Bidirectional Target of the African <i>Xanthomonas oryzae</i> pv. <i>oryzae</i> Major Transcription Activator-like Effector TalC but Does Not Contribute to Disease Susceptibility.	Int J Mol Sci	23(10)		2022	ATAC1,XA41,ILI2	OsATAC1,OsSWEET14, SWEET14, Os11N3, Os-11N3, 11N3, Xa41(t), xa41, Os11N3/SWEET14, OsSWEET14/Os11N3,OsILI2, OsbHLH186, bHLH186, ATAC2/ILI2, ATAC2, OsATAC2
51442	35628595	Liu X., Deng X.J., Li C.Y., Xiao Y.K., Zhao K., Guo J., Yang X.R., Zhang H.S., Chen C.P., Luo Y.T., Tang Y.L., Yang B., Sun C.H., Wang P.R.	Mutation of Protoporphyrinogen IX Oxidase Gene Causes Spotted and rolled leaf and Its Overexpression Generates Herbicide Resistance in Rice.	Int J Mol Sci	23(10)		2022	DVR,PSAA,CHLH,FC2,RBCL,YS53,RBCS,_,APX2,OUL1,YGL10,PSBA,CATA,FGL,AOX1A,APX1,SPRL1,HEMA,AOX1B,PPO2,SRL1,CATB,PRX16,FC1,YGL98	OsDVR,PsaA, psaA, PsAA1, psaA1,OsChlH, ChlH, OsCHLH,OsFC2, OsGUN6-2, GUN6-2 ,rbcL, rbcA, OsrbcL,GSA, GSAT, HEML, OsGSA, OsGSAT, OsHEML, OsGSAM, GSAM, OsYS53,rbcS, OsRbcS, RBCS-C, RbcS2, OsRBCS2, RbcS1, OsRbcS2, OsrbcS1,ALAD, HEMB, OsALAD, OsHEMB, hemB,OsAPX2, OsAPx02, APXb, OsAPx2, OSAPX2, APx2, cAPX, OsAPX1, APX1,ROC5, Roc5(t), Roc5, GL2-5, OsROC5, CLF1, OsCLF1, OsOUL1, OsHDZ7, OsHDZIP7, HDZ7, HDZIP7,CAO, OsCAO, CAO1, OsCAO1, Oslls1, Lls1, DVR, PGL,PsbA, psbA, OsPsbA, PSBD1, OsPSBD1, psbD1,CATA1, Cat A1*, OSCAT-A, Cat2, CatA1, CAT-A, OsCatA, OsCAT, CAT, catA, OSCATA, OsCATc, OsCATA, OsCAT1A, CAT1, OsCAT1, OsCATC, OsCAT2,fgl(fl), fl, fgl, OsFGL, OsPorB, PoPA, PORA, porA, OsPORA, PORB, OsPORB,Ao1-1, AOX1a, OsAOX1a, AOX 1a,OsAPX1, APXa, OsAPXa, OsAPx01, OsAPx1, OSAPX1, APx1, cAPX, APX2, cAPXa, OscAPXa,OsPPX, PPX, PPO1, OsPPO1, OsSPRL1, LMM8, OsLMM8,HEMA1, OsHEMA, GluTR, OsHEMA1, hemA,AOX1b, OsAOX1b,OsPPO2,OsSRL1, CLD1/SRL1, CLD1, OsCLD1, OsSPARK9, SPARK9,CatB, CAT-B, OsCatB, OsCATB, OsCAT1B, CAT1B, CAT2, OsCAT2,prx16, OsPRX16, OsPOD1, POD1,OsFC1, OsGUN6-1, GUN6-1,OsChlD, ChlD, CHLD, OsCHLD, Ygl7, YGL3, OsvWA12, vWA12
51443	35609869	Gho Y.S., Choi H., Moon S., Kim S.R., Ha S.H., Jung K.H.	Tissue-specific enhancement of OsRNS1 with root-preferred expression is required for the increase of crop yield.	Journal of Advanced Research			2022		
51444	35451078	Liu X., Gao Y., Guo Z., Wang N., Wegner A., Wang J., Zou X., Hu J., Liu M., Zhang H., Zheng X., Wang P., Schaffrath U., Zhang Z.	MoIug4 is a novel secreted effector promoting rice blast by counteracting host OsAHL1-regulated ethylene gene transcription.	New Phytol.	235(3)	1163-1178	2022		
51445	35712587	Chen Z., Teng S., Liu D., Chang Y., Zhang L., Cui X., Wu J., Ai P., Sun X., Lu T., Zhang Z.	RLM1, Encoding an R2R3 MYB Transcription Factor, Regulates the Development of Secondary Cell Wall in Rice.	Front Plant Sci	13	905111	2022	RLM1,CCR1,MPK20-1,GH2	OsMYB86-L2, MYB86-L2, OsRLM1, Os2R_MYB59, 2R_MYB59,OsCCR1,OsMPK20-1, OsMAPK10, MAPK10,gh2, CAD2, CAD, OsCAD2, OsGH2 
51446	35628631	Feng H., Qiu T., Yin C., Zhao X., Xu G., Qi L., Zhang Y., Peng Y., Zhao W.	The Rice Malectin Regulates Plant Cell Death and disease resistance by Participating in Glycoprotein Quality Control.	Int J Mol Sci	23(10)		2022	FES1C,PR1A,SG2,CRT2,SERK1,CNX,RPN1,O3,MRLP4,BZIP50,PR10A,ERDJ3B,PR5,CHIB1,BZIP28,CRO1,WRKY62,BZIP39,PR1B,WRKY45,IRE1,REP2,CHT8,VPE2	NEF, OsFes1C, Fes1C,OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1, OsPR1b, PR1alpha, OsPR1alpha,OsSERK1, SERK1, OsBAK1, BAK1, OsSERK1/OsBAK1, OsBISERK1, BISERK1, OsSerk1, OsBAK1-1, 08SG2/OsBAK1, 08SG2, OsSG2,CRT, OsCRT, CRT-2, OsCRT-2, OsCRT2,OsSERK1, OsSERK2, OsBiSERK1, SERK2, BiSERK1, OsSerk2, OsBAK1-2,OsCNX, OsCNX1, CNX1,OsRpn1,OsbZIP60, bZIP60,OsMRLP4, OsMLD1, MLD1,OsbZIP60, bZIP50, OsbZIP50, OsbZIP74, bZIP74, OsbZIP50-S,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsDjB6, OsERdj3B, ERdj3B,OsPR5, Pir2, PR-5, PR5-1,Oschib1, chib1, PR-8, PR8, OsPR8, OsPR8b, PR8b,OsbZIP28, OsbZIP1, OsNIF1, OsTGA3, TGA3, OsTGA3/OsbZIP08,OsCRO1, CRT, CRT-1, OsCRT-1, OsCRT1, CRT1,OsWRKY62, OsWRKY62.1, OsWRKY62.2, XB10, OsWRKY62-1, OsWRKY62-2,OsbZIP39, bZIP39, DLN138, OsDLN138,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1, OsPR1a, PR1a,OsWRKY45, OsWRKY45-1, OsWRKY45-2, WRKY45-1, WRKY45-2,OsIRE1, OsIre1,OsVPE3, VPE3, OsREP-2, REP-2alpha, REP-2beta, OsaLeg2, aLeg2,Cht8, OsChia2a, Cht2, Rcht2, Chia2a, CHIT14, OsCHIT14, OsPR3,OsVPE2
51447	35722516	Anshu A., Agarwal P., Mishra K., Yadav U., Verma I., Chauhan S., Srivastava P.K., Singh P.C.	Synergistic action of <i>Trichoderma koningiopsis and T. asperellum</i> mitigates salt stress in paddy.	Physiol Mol Biol Plants	28(5)	987-1004	2022		
51448	35682553	Qu X., Zou J., Wang J., Yang K., Wang X., Le J.	A Rice R2R3-Type MYB Transcription Factor OsFLP Positively Regulates Drought Stress Response via OsNAC.	Int J Mol Sci	23(11)		2022	DST,NAC5,DREB2A,LEA3-1,FLP,ONAC2,NAC6	OsDST, DLN102, OsDLN102, HST1, OsHST1,OsNAC5, NAC71, ONAC071, ONAC009, ONAC9, ONAC020, ONAC20, OnNAC5*, OnNAC5, OsNAC5/ONAC009,OsDREB2A, OsDREB2a, ERF40, OsERF#040, OsERF040, OsERF40, AP2/EREBP#167, AP2/EREBP167,OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3, OsLEA3A, LEA3A,OsFLP,SNAC1, snac1, OsNAC9, ONAC002, ONAC2, ONAC033, ONAC33, ONAC043, ONAC43, ONAC044, ONAC44, OsNAC19, NAC19, SNAC1/ONAC002, OsSNAC1, OsNAC9, OsNAC1,OsNAC6, ONAC048, NAC48, SNAC2, SNAC2/OsNAC6, OsNAC6/ONAC048, OsSNAC2, SNAC-2, OsSNAC-2, OsNAC2
51449	35277719	Konishi N., Huang S., Yamaji N., Ma J.F.	Cell-Type-Dependent but CME-Independent Polar Localization of Silicon Transporters in Rice.	Plant Cell Physiol.	63(5)	699-712	2022	AP2M	OsAP2M
51450	35640876	Tian J., Wang L., Hui S., Yang D., He Y., Yuan M.	Cadmium accumulation regulated by a rice heavy-metal importer is harmful for host plant and leaf bacteria.	Journal of Advanced Research			2022		
51451	35620685	Guo F., Zhang P., Wu Y., Lian G., Yang Z., Liu W., Buerte B., Zhou C., Zhang W., Li D., Han N., Tong Z., Zhu M., Xu L., Chen M., Bian H.	Rice LEAFY COTYLEDON1 Hinders Embryo Greening During the Seed Development.	Front Plant Sci	13	887980	2022	LEA1,PSAH,PME17,EXPB6,GNP1,LEA3-1,FGL,LEA15,PP2C1,PSBW,GA2OX7,GA2OX6,GA2OX3,LEA18,GA2OX9,EXPA4,PORA,NCED1,EXPB4,LEA30,LEA4,HSP90.1,LEA16,PME12,EXPA7,PSAE,PSAL,PSBQ,PME2,LEC1,PSBO,PSBX,SDR4,LEA22,EXPB2,LHCA1,PSBP,LEA17,LHCA3,VP1,PME5,PSAN,PME4,LEA3,PC,LEA20,PME22	OsLEA1, OsLEA2, LEA2,PsaH, GOS5, OsPSAH, OsGOS5,OsPME17,OsEXPB6, osaEXPb1.8, EXPb1.8,GA20OX1, OsGA20ox1, 20ox1, GA20ox-1, ga20ox1, Os20ox, C20OX2, OsGA20ox2, OsGA20ox-1, GA20ox1, OsGNP1,OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3, OsLEA3A, LEA3A,fgl(fl), fl, fgl, OsFGL, OsPorB, PoPA, PORA, porA, OsPORA, PORB, OsPORB,OsLEA15,OsPP2C1, OsSIPP2C1, SIPP2C1, OsPP2C68, PP2C68, OsPP108,PsbW, OsPSBW,OsGA2ox7,OsGA2ox6,OsGA2ox3, ga2ox 3, OsGA2ox-3, GA2ox3, GA2ox-3, GA2ox4,OsLEA18,OsGA2ox9, GA2ox7, 2-ODD35, Os2-ODD35, 2ODD35, Os2ODD35,OsEXP4 (Os-EXP4), OsEXPA4, OsEXP4, Os-EXP4, OsaEXPa1.22,OsPorA, OsPORA,OSNCED1, OsNCED-1, OsNCED3, OsNced3, NCED3, OsNCED9, NCED9,OsEXPB4, OsaEXPb1.7, EXPb1.7,OsLEA30, OsEnS-43,OsLEA4,Hsp90, OsHSP90.1,OsLEA16,OsPME12,OsEXPA7, EXP7, OsEXP7, OsaEXPa1.26,PsaE, OsPsaE,PsaL, OsPSAL,PsbQ, OsPsbQ, psbQ, PsbQ-1,OsPME2,OsHAP3E, HAP3E, OsLEC1/OsHAP3E, OsLEC1, LEC1, OsNF-YB7, NF-YB7, NFYB7, L1L ,PsbO, psbO, OsPSBO,PsbX,Sdr4, OsSdr4, OsSdr4-n, OsSdr4-k, OsSdr4L, Sdr4L ,OsLEA22, RAB25, OsRab16, Rab16, OsABA45, ABA45,OsEXPB2, OsaEXPb1.9, EXPb1.9,OsLhca1, Lhca1,PsbP, OsPsbP, psbP,OsLEA17, OsLEA3-2, LEA3-2, LEA1,OsLhca3, Lhca3,Vp1* (OSVP1), OsVP1, OsVp1, Vp1, ABI3, OsABI3, OsLFL4, OsVp-1, OSVP1,OsPME5,psaN, OspsaN, PN, OsPN,OsPME4,OsLEA3, OsEnS-84,OsPC, PetE, OsPETE, OsCPL1, CPL1,OsLEA20, OsLEA1, OsLEA1a,OsPME22
51452	35712583	Guo M., Zhao H., He Z., Zhang W., She Z., Mohammadi M.A., Shi C., Yan M., Tian D., Qin Y.	Comparative Expression Profiling of Snf2 Family Genes During Reproductive Development and Stress Responses in Rice.	Front Plant Sci	13	910663	2022	CTD2,CHR737,CHR719,DDM1B,SYD,CHR726,PIE1,S13,DLN56,AP2/EREBP85,CHR727,CHR728,CHR724,CHR713,INO80,RAD54,CHR731,CHR735,CHR739,CHR742,DRD1,CHR743,ALT1,FBOX58,RFS,DLN43,CHR717,EDA16,ENL1L,DDM1A,CHR711,CHR714,CLSY1,PKL,CSB,CHR715,CHR721,CHR705,DLN32,BRM	OsCTD2, CHR740, OsCHR740, OsCLSY3, CLSY3, OsFEL1, FEL1,OsCHR737,OsCHR719,OsDDM1b, DDM1b, DDM1, DLN98, OsDLN98, CHR741, OsCHR741,OsCHR720, OsSYD, CHR720,OsCHR726,OsPIE1, CHR709, OsCHR709,CSB, OsCHR745, CHR745, OlCHR,OsDLN56, CHR710, OsCHR710,  OsRING283, RING283,AP2/EREBP#085, DRD1, OsDRD1, CHR730, OsCHR730,OsCHR727,OsCHR728,OsCHR724,  OsRING164, RING164,CSB, OsCHR713,OsINO80, CHR732, OsCHR732,OsRAD54, OsRad54, CHR733, OsCHR733,OsCHR731,  OsRING361, RING361,OsCHR735,  OsRING284, RING284,OsCHR739,OsCHR742, OsCLSY4, CLSY4, OsFEM2, FEM2,OsDRD1, CHR736, OsCHR736,OsCHR743,OsDLN22, DLN22, CHR706, OsCHR706, OsALT1,  OsRING431, RING431,OsFbox058, OsFbox58, Os_F0591, DLN37, OsDLN37, CHR707, OsCHR707,  OsFBO7, FBO7,rfs, cul7, OsRFS, OsCHR729, CHR729, CHR4, OsCHR4, CRL6, OsCRL, OsCHR4/CHR729, PKR1, OsPHD32, PHD32,OsDLN43, CHR701, OsCHR701,OsCHR717,BRHIS1, Os BRHIS1, OsEDA16, CHR725, OsCHR725,  OsRING433, RING433,OsENL1L, CHR712, OsCHR712,OsDDM1a, DDM1a, DLN225, OsDLN225, CHR746, OsCHR746,Snf2P, OsSnf2P, OsCHR711,OsCHR714,OsCLSY1, CHR722, OsCHR722,CHR702, chr702, OsCHR702,OsCBS, CHR704, OsCHR704,SnRK2, OsCHR715,  OsRING432, RING432,OsCHR721, SMARCAL1, OsSMARCAL1,chr705, OsCHR705,CHR703, OsDLN32, OsCHR703,OsCHR707, CHR707, OsBRM, OsBrd11, Brd11
51453	35482934	Liu K., Wang X., Liu H., Wu J., Liang F., Li S., Zhang J., Peng X.	OsAT1, an anion transporter, negatively regulates grain size and yield in rice.	Physiol Plant	174(3)	e13692	2022		
51454	35636234	Wang X., Jain A., Cui M., Hu S., Zhao G., Cao Y., Hu F.	Distribution of phenanthrene in the OsPHO2 reveals the involvement of phosphate on phenanthrene translocation and accumulation in rice.	Ecotoxicol. Environ. Saf.	240	113685	2022		
51455	35569367	Chu Z., Wang H., Wang Y., Chang S., Jia S., Pang L., Xi C., Liu J., Zhao H., Zhou X., Han S., Wang Y.	OsHSD2 interaction with and phosphorylation by OsCPK21 is essential for lipid metabolism during rice caryopsis development.	J. Plant Physiol.	274	153714	2022		
51456	35583702	Zhang C., Zhang J., Liu H., Qu X., Wang J., He Q., Zou J., Yang K., Le J.	Transcriptomic analysis reveals the role of FOUR LIPS in response to salt stress in rice.	Plant Mol. Biol.			2022		
51457	35395113	Xu Z., Li E., Xue G., Zhang C., Yang Y., Ding Y.	OsHUB2 inhibits function of OsTrx1 in heading date in rice.	Plant J.	110(6)	1670-1680	2022		
51458	35684245	Siena L.A., Azzaro C.A., Podio M., Stein J., Leblanc O., Pessino S.C., Ortiz J.P.A.	The Auxin-Response Repressor <i>IAA30</i> Is Down-Regulated in Reproductive Tissues of Apomictic <i>Paspalum notatum</i>.	Plants (Basel)	11(11)		2022		
51459	35665185	Liu Y.N., Liu C.C., Guo R., Tian L., Cheng J.F., Wu Y.N., Wang D., Wang B.	The Rice Qa-SNAREs in SYP13 Subfamily Are Involved in Regulating Arbuscular Mycorrhizal Symbiosis and seed fertility.	Front Plant Sci	13	898286	2022	PT11,AM1,SYP132,FATM,_,RAM2,SYP131	OsPT11, PHT1-11, OsPht1;11, ORYsa;PHT1;11,OsAM1, prx53, OsPRX53,OsSYP132, OsSYP131a, SYP131a,OsFatM, FatM,OsSYP132, SYP132,GPAT, OsRAM2,OsSYP131, OsSYP131b, SYP131b
51460	35578671	Mao F., Wu D., Lu F., Yi X., Gu Y., Liu B., Liu F., Tang T., Shi J., Zhao X., Liu L., Ji L.	QTL mapping and candidate gene analysis of low temperature germination in rice (<i>Oryza sativa</i> L.) using a genome wide association study.	PeerJ	10	e13407	2022		
51461	35684226	Pathak B., Maurya C., Faria M.C., Alizada Z., Nandy S., Zhao S., Jamsheer K M., Srivastava V.	Targeting TOR and SnRK1 Genes in Rice with CRISPR/Cas9.	Plants (Basel)	11(11)		2022	OSK1,TOR,SNRK1B,OSK4,OSK3	osk1, SnRK1A, OsSnRK1A, OsSNRK1a, SnRK1A/OSK1, SnRK1a, OsSnRK1.2, SnRK1.2, OsSnRK1alphaA, SnRK1alphaA,OsTOR,SnRK1B, OsSnRK1B, OsSnRK1.3, SnRK1.3, OsSnRK1alphaD, SnRK1alphaD,osk4, OsK4, OsATG1c, ATG1C, SnRK1B, snrk1b, SnRK1B/OSK24, OSK24, OsK24, OsSNRK1b, OsSnRK1.4, SnRK1.4, OsSnRK1alphaC, SnRK1alphaC,osk3, OsATG1b, ATG1B, OSK5, osk5, OSK35, SnRK1b, OsK35, OsSnRK1.1, SnRK1.1, OsSnRK1alphaB, SnRK1alphaB
51462	35678689	Zhang A., Jiang H., Chu H., Cao L., Chen J.	Rice lesion mimic Gene Cloning and Association Analysis for disease resistance.	Curr Issues Mol Biol	44(5)	2350-2361	2022	GID2,SPLHM47,ACLA2,TIFY11E,LRD43,SSI2,SDS2,CSLF6,ABC1,SCYL2,SPL33,SPL88 ,SL,FGL,ACDR1,SPL50,LMS,SPL18,NBL3,SPL29,LLB,WAK25,NLS1,EBR1,RLIN1,HPL3,SPL7,NOE1,SPL5,SPL11,LMR,PLS1,SPL28,NH1,SPL35,RLCK178,LSD1	gid2, GF14e, OsGF14e, OsGID2, 14-3-3e,splHM47, HM47, OsPelo, OsPELO, PELO, LML1, OsLML1,SPL30, OsSPL30, OsACL-A2, ACL-A2,OsJAZ 13, OsJAZ13,JAZ13, OsTIFY11e, OsJAZ13a, OsJAZ13b, OsJAZ13c, OsJAZ13d,RLS1, OsRLS1, OsLRD43, NOE2, OsNOE2,OsSSI2,OsSDS2, SDRLK-SDS2, OsSDRLK-SDS2,OsCslF6, OsCSLF6, OsCLD3, CLD3,OsABC1, SPL32, OsSPL32, OsGLU, OsFd-GOGAT, Fd-GOGAT, ABC1/ OsFd-GOGAT ,OsSCYL2,LMM5.1, SPL33/LMM5.1, OsSPL33, OsLMM5.1,OsCUL3a, CUL3a, OsSPL88 ,OsSL, sl (spl1), sl*, sl, spl1, CYP71P1, Os CYP71P1, T5H, OsT5H, CYP71A1, OsCYP71A1, OsLLM1, LLM1, LLM1/OsSL, ELL1, OsELL1, ELL1/SL, OsT5H1,fgl(fl), fl, fgl, OsFGL, OsPorB, PoPA, PORA, porA, OsPORA, PORB, OsPORB,OsEDR1, OsACDR1, EDR1, OsMAPKKK1, MAPKKK1, SPL3, OsSPL3,OsSPL50,OsLMS,Spl18, OsAT1, AT1,OsNBL3,UAP1, OsUAP1, OsSPL29,OsLLB, LCMT, OsMTS1, MTS1, PLS3,OsWAK25,OsNLS1,OsRFP, RFP, OsEBR1,  OsRING398, RING398,CPO, CPOX, LLM1, HEMF, OsRLIN1, OsCPO, OsCPOX, OsLLM1, OsHEMF,OsHPL3, CYP74B2, OsCYP74B2,spl7, HSFA4D, HSF10, HSF15, OsHSF15, SP17, OsHsf-15, rHsf10, OsHsfA4d, HSfA4d, lrd13, HSF1,CATC, OsCat, OsCatC, OsCATC, OsNOE1, noe1, catC, OsCATC, CAT3, OsCAT3, LLM9428, OsLLM9428,spl5(bl6,spl5-1), bl6, spl5, SF3b3,spl11, spl11*, OsPUB11, PUB11,  OsPUB11/SPL11, PUB11/SPL11,OsLMR, LRD6-6, OsLRD6-6, SPL-A, OsSPL-A,OsVHA-A, VHAA1, VHA-A1, OsVHA-A1, OsPLS1, OsPSL1/VHA-A1,OsSPL28, PSL50, OsPSL50, AP1M1, OsAP1M1,OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2, DLN5, OsDLN5,  OsBTBA1, BTBA1,OsSPL35,OsPti1a, Pti1a, OsRLCK178,OsLSD1, OsLOL1, OsLSD1.1, LSD1.1
51463	35595300	Yuan H., Xu Z., Chen W., Deng C., Liu Y., Yuan M., Gao P., Shi H., Tu B., Li T., Kang L., Ma B., Wang Y., Wang J., Chen X., Li S., Qin P.	OsBSK2, a putative brassinosteroid-signaling kinase, positively controls grain size.in rice.	J. Exp. Bot.			2022		
51464	35693165	Xu J., Ji Z., Wang C., Xu F., Wang F., Zheng Y., Tang Y., Wei Z., Zhao T., Zhao K.	<i>WATER-SOAKED SPOT1</i> Controls Chloroplast Development and leaf senescence <i>via</i> Regulating Reactive Oxygen Species Homeostasis in Rice.	Front Plant Sci	13	918673	2022	PSAA,CAB1R,RPOB,FGL,V2,YGL10,WSS1,RBCS,RBCL,PSBA	PsaA, psaA, PsAA1, psaA1,cab1R, LHCP, CAB, OsLhcb1, Lhcb1, Cab1, OsCAB1, Lhcb1b, OsLhcb1b, CAB2R,rpoB, RpoB, Rpobeta,fgl(fl), fl, fgl, OsFGL, OsPorB, PoPA, PORA, porA, OsPORA, PORB, OsPORB,v2, mGmk, GMK, Gmk, pt/mtGK, pt/mt GK, OsV2, OsGMK,CAO, OsCAO, CAO1, OsCAO1, Oslls1, Lls1, DVR, PGL,OsWSS1, TMK1, OsTMK1,rbcS, OsRbcS, RBCS-C, RbcS2, OsRBCS2, RbcS1, OsRbcS2, OsrbcS1,rbcL, rbcA, OsrbcL,PsbA, psbA, OsPsbA, PSBD1, OsPSBD1, psbD1
51465	35560151	Tan X., Zhang H., Yang Z., Wei Z., Li Y., Chen J., Sun Z.	NF-YA transcription factors suppress jasmonic acid-mediated antiviral defense and facilitate viral infection in rice.	PLoS Pathog.	18(5)	e1010548	2022	HAP2I,_,HAP2C,HAP2F,BHLH9,JIOSPR10,HAP2D,HAP2H,TIFY10C,HAP2K,HAP2E,TIFY11D,HAP2J,HAP2A,TIFY11C,BHLH10,HAP2G,HAP2B,PFT1,TIFY11A	OsHAP2I, NF-YA, CBF-B, NF-YA8, OsNF-YA8, OsEnS-136, NFYA8,Lox2:Os:1, OsLOX9, LOX9, OsLOX8, LOX8, OsLOX2, LOX2, OsRLL, OsHI-LOX, HI-LOX, RLL2 LOX, RLL2, Lox2osPil, OsLOX2;1, LOX2;1, OsLOX1, OsLOX7, LOX7,OsHAP2C, NF-YA, CBF-B, NF-YA1, OsNF-YA1, NFYA1,OsHAP2F, NF-YA, CBF-B, NF-YA10, OsNF-YA10, NFYA10,OsbHLH009, bHLH009, OsMYC2, MYC2,JIOsPR10, OsPR10, PR10, OsJiPR10, JiPR10, OsPR10c, PR10c,OsHAP2D, NF-YA, CBF-B, NF-YA4, OsNF-YA4, NFYA4,OsHAP2H, NF-YA, CBF-B, NF-YA3, OsNF-YA3, NFYA3,OsJAZ7, JAZ7, OsJAZ 8, OsJAZ8, Os-JAZ8, JAZ8, OsTIFY10c, OsTIFY10c/OsJAZ8,OsHAP2K, NF-YA11, OsNF-YA11, NFYA11,OsHAP2E, NF-YA, CBF-B, NF-YA2, OsNF-YA2, NFYA2,OsTIFY11d, OsJAZ1, JAZ1, OsJAZ 12, OsJAZ12, JAZ12,OsHAP2J, NF-YA, CBF-B, NF-YA5, OsNF-YA5, NFYA5,OsHAP2A, NF-YA, CBF-B, NF-YA7, OsNF-YA7, NFYA7,OsJAZ2, JAZ2, OsJAZ 11, OsJAZ11, Os-JAZ11, JAZ11, OsTIFY11c, OsJAZ1, JAZ1,OsICE1, ICE1, OsbHLH010, bHLH010, OsMYL1, MYL1, bHLH116, OsMYC3, MYC3 ,OsHAP2G, NF-YA, CBF-B, NF-YA6, OsNF-YA6, NFYA6,OsHAP2B, NF-YA, CBF-B, NF-YA9, OsNF-YA9, NFYA9,OsPFT1, OsMED25_1, MED25_1, OsMED25, MED25, OsvWA27, vWA27,OsJAZ3, JAZ3, OsJAZ 9, OsJAZ9, Os-JAZ9, JAZ9, OsTIFY11a, OsJAZ6, JAZ6
51466	35707617	Sanyal R.P., Prashar V., Jawali N., Sunkar R., Misra H.S., Saini A.	Molecular and Biochemical Analysis of Duplicated Cytosolic CuZn Superoxide Dismutases of Rice and <i>in silico</i> Analysis in Plants.	Front Plant Sci	13	864330	2022	SODCC1,SODCC2	sodCc1, SODCC.1, sodA, RSODA, OsSOD1, OsCSD2, OsSodA, SodCc2, OsSODA1, SODCc1-Cu/Zn, OsCu/Zn-SOD2, Cu/Zn-SOD2, OsCSD1.2, CSD1.2, OsSODCc1-Cu/Zn, SODCc1-Cu/Zn, CuZnSOD1, Cu/ZnSOD1, OsCu/ZnSOD1, OsCSD4, CDS4, CuZnSOD4, OsCuZnSOD1, OsCSD1, CSD1, OsSOD2,Cu/Zn-SOD, Cu/Zn- SOD, OsCu-ZnSOD2, Cu-ZnSOD2, OsSODB, OsSOD3, SodCc2, Os SodCc2, sodB, OsSodB, RSODB, OssodCc1, OsCSD1.1, CSD1.1, OsCDS1, OsSOD3-CU/Zn, SOD3-CU/Zn, CuZnSOD2, Cu/ZnSOD2, OsCu/ZnSOD2, OsCSD1, CSD1, CuZnSOD1, OsCuZnSOD2, OsCSD4, CSD4, OsCSD3, CSD3, Cu/Zn-SOD3
51467	35643601	Kaur N., Prashanth K.H., Bhatti M.S., Pati P.K.	OsSalT gene cloned from rice provides evidence of its role in salinity and drought stress tolerance.	Plant Sci.	320	111306	2022		
51468	35563584	Zhao D.D., Jang Y.H., Farooq M., Park J.R., Kim E.G., Du X.X., Jan R., Kim K.H., Lee S.I., Lee G.S., Kim K.M.	Identification of a Major QTL and Validation of Related Genes for tiller angle in Rice Based on QTL Analysis.	Int J Mol Sci	23(9)		2022	SAUR38	OsSAUR38, OsSAURq9, SAURq9
51469	35722514	Sebastian A., Nugroho I.C., Putra H.S.D., Susanto F.A., Wijayanti P., Yamaguchi N., Nuringtyas T.R., Purwestri Y.A.	Identification and characterization of drought-tolerant local pigmented rice from Indonesia.	Physiol Mol Biol Plants	28(5)	1061-1075	2022		
51470	35670739	Liu T., Zhang X., Zhang H., Cheng Z., Liu J., Zhou C., Luo S., Luo W., Li S., Xing X., Chang Y., Shi C., Ren Y., Zhu S., Lei C., Guo X., Wang J., Zhao Z., Wang H., Zhai H., Lin Q., Wan J.	Dwarf and High Tillering1 represses rice tillering through mediating the splicing of D14 pre-mRNA.	Plant Cell			2022	DHT1	OsDHT1
51471	35762970	Zhang L., Zhang F., Zhou X., Poh T.X., Xie L., Shen J., Yang L., Song S., Yu H., Chen Y.	The tetratricopeptide repeat protein OsTPR075 promotes heading by regulating florigen transport in rice.	Plant Cell			2022	C2DP5,TPR75 	OsC2DP5, OsFTIP9, FTIP9,OsTPR075, TPR075, OsTPR75
51472	35642941	Niu Y., Huang X., He Z., Zhang Q., Meng H., Shi H., Feng B., Zhou Y., Zhang J., Lu G., Wang Z., Zhang W., Tang D., Wang M.	Phosphorylation of OsTGA5 by casein kinase II compromises its suppression of defense-related gene transcription in rice.	Plant Cell			2022		
51473	35816196	Osnato M.	Novel dwarfing alleles for the next green revolution: Mutations in DTL and OSH15 alter internode elongation and grain size in rice.	Plant Cell			2022		
51474	35771942	Shimizu M., Hirabuchi A., Sugihara Y., Abe A., Takeda T., Kobayashi M., Hiraka Y., Kanzaki E., Oikawa K., Saitoh H., Langner T., Banfield M.J., Kamoun S., Terauchi R.	A genetically linked pair of NLR immune receptors shows contrasting patterns of evolution.	Proc. Natl. Acad. Sci. U.S.A.	119(27)	e2116896119	2022	RGA5,RGA4	Os11gRGA5, OsRGA5, RGA5-A, RGA5-B, Pi5, Pias-2,Os11gRGA4, OsRGA4, Pias-1
51475	35709289	Zhang H., Zhou J.F., Kan Y., Shan J.X., Ye W.W., Dong N.Q., Guo T., Xiang Y.H., Yang Y.B., Li Y.C., Zhao H.Y., Yu H.X., Lu Z.Q., Guo S.Q., Lei J.J., Liao B., Mu X.R., Cao Y.J., Yu J.J., Lin Y., Lin H.X.	A genetic module at one locus in rice protects chloroplasts to enhance thermotolerance.	Science	376(6599)	1293-1300	2022	TT3.2,LE	OsTT3.2,OsRHC1, RHC1, OsLE, TT3.1, OsTT3.1,  OsRING133, RING133, DGS1, OsDGS1
51476	35772655	Lin Y., Lian L., Zhu Y., Wang L., Li H., Zheng Y., Cai Q., He W., Xie H., Wei Y., Wang H., Xie H., Zhang J.	Characterization and expression analysis of the glycosyltransferase 64 family in rice (Oryza sativa).	Gene	838	146708	2022		
51477	35733263	Ishikawa R., Castillo C.C., Htun T.M., Numaguchi K., Inoue K., Oka Y., Ogasawara M., Sugiyama S., Takama N., Orn C., Inoue C., Nonomura K.I., Allaby R., Fuller D.Q., Ishii T.	A stepwise route to domesticate rice by controlling seed shattering and panicle shape.	Proc. Natl. Acad. Sci. U.S.A.	119(26)	e2121692119	2022		
51478	35733265	Andrade L., Lu Y., Cordeiro A., Costa J.M.F., Wigge P.A., Saibo N.J.M., Jaeger K.E.	The evening complex integrates photoperiod signals to control flowering in rice.	Proc. Natl. Acad. Sci. U.S.A.	119(26)	e2122582119	2022	GHD7,ELF3.2,PHYB,HD3B,PCL1,HD2	Ghd2, Ghd7, OsGhd7, OsCCT26, OsCMF8, OsI, Ghd7/Hd4, Hd4, EH7-1/Hd4, Ghd7-0a, EH7-1, EH7/Ghd7, EH7, OsEH7, GLW7.1, OsGLW7.1,ELF3_chr.1, OsELF3.2, ELF3.2, OsELF3-2, ELF3-2, OsELF3b, ELF3b,phyB, PHYB1, OsPHYB, OsphyB, OsYHB, YHB, OsPHYB/OsYHB,Hd17, EF7, Ef7, OsELF3-1, ELF3-1, OsELF3, ELF3, ELF3_chr.6, OsELF3.1, ELF3.1, OsELF3a, ELF3a,OsPCL1, OsLUX, LUX, OsLVP2, LVP2,Hd2(t), Hd2, qHD2(t), OsPRR37, Os-PRR37, PRR37, Prr4, OsPRR4, DTH7, Os DTH7, OsCCT28, CCT28, Ghd7.1, PRR37/Hd2, EH7-2, EH7-2/Hd2, Hd2/PRR37, PRR37-1a, PRR37-1b, PRR37-1c, PRR37-2a, PRR37- 2, HD7.2
51479	35714805	Zhao Y.N., Li C., Li H., Liu X.S., Yang Z.M.	OsZIP11 is a trans-Golgi-residing transporter required for rice iron accumulation and development.	Gene	836	146678	2022	ZIP11	OsZIP11
51480	35736737	Tian P., Liu J., Yan B., Li S., Lei B., Shen R., Lei C., Xu M.	OsBSK3 Positively Regulates Grain Length and Weight by Inhibiting the phosphatase activity of OsPPKL1.	Plants (Basel)	11(12)		2022	RLCK173,D2,D11,GSK4,GL3.1,DWARF4	OsRLCK173, OsBSK3, BSK3,d2, dwf2, CYP90D2, D2/CYP90D2, OsD2, SMG11, OsSMG11, D2/SMG11, OsD2a, OsD2b,d11(d8), dwf10, d8, D11/CYP724B1, d11, CYP724B1, GNS4, OsD11, PMM1, OsPMM1, PMM1/D11, NBG4, OsCPB1, CPB1, CPB1/D11,OsSK23/OsGSK4, OsSK23, OsGSK4, SK23, OsGSK3, GSK3,OsPPKL1, PPKL1, qGL3, OsPP54, PP54, OsGL3.1, qGL3/OsPPKL1,OsDWARF4, osdwarf4, OsDWF4, DWF4, CYP90B2, OsCYP90B2, D4, OsD4
51481	35511278	Yin W., Yang H., Wang Y., Feng P., Deng Y., Zhang L., He G., Wang N.	Oryza sativa PECTIN DEFECTIVE tapetum1 affects anther development through a pectin-mediated signaling pathway in rice.	Plant Physiol.	189(3)	1570-1586	2022	TDR,CYP704B2,GAMYB,PDT1,_,EAT1,CYP703A3,PTC1	tdr, OsbHLH005, bHLH005, OsbHLH5, bhlh5, TDR1, OsTDR, OsTDR1, OsMYC5, MYC5,OsCYP704B2,OsGAMYB, GAM1, OsGAMyb, Os-MYBGA, Os GAMYB, OsMYBGA, MYBGA, Os2R_MYB15, 2R_MYB15 ,OsGAUT2, GAUT, OsPDT1,OsiWAK1, WAK1,OsEAT1, OsbHLH141, EAT1/DTD1, bHLH141, DTD1, DTD, DLN120, OsDLN120,OsCYP703A3,OsMS1, tms9-1, OsPTC1, MS1, TMS9-1, OsTMS9-1
51482	35678495	Xiao Y., Zhang H., Li Z., Huang T., Akihiro T., Xu J., Xu H., Lin F.	An amino acid transporter-like protein (OsATL15) facilitates the systematic distribution of thiamethoxam in rice for controlling the brown planthopper.	Plant Biotechnol. J.			2022		
51483	35643887	Chen G., Xuan W., Zhao P., Yao X., Peng C., Tian Y., Ye J., Wang B., He J., Chi W., Yu J., Ge Y., Li J., Dai Z., Xu D., Wang C., Wan J.	OsTUB1 confers salt insensitivity by interacting with Kinesin13A to stabilize microtubules and ion transporters in rice.	New Phytol.	235(5)	1836-1852	2022		
51484	35333328	Wu Q., Liu Y., Xie Z., Yu B., Sun Y., Huang J.	OsNAC016 regulates plant architecture and drought tolerance by interacting with the kinases GSK2 and SAPK8.	Plant Physiol.	189(3)	1296-1313	2022		
51485	35603832	Nie Y., Yu L., Mao L., Zou W., Zhang X., Zhao J.	Vitamin B1 THIAMIN REQUIRING1 synthase mediates the maintenance of chloroplast function by regulating sugar and fatty acid metabolism in rice.	J Integr Plant Biol	64(8)	1575-1595	2022	TH1	OsTH1, CLES, OsCLES 
51486	35460247	Ahmed S., Chen J.	Transcription factor OsNAC016: a convergent point of brassinosteroid and abscisic acid signaling in rice.	Plant Physiol.	189(3)	1177-1179	2022		
51487	35736727	Zhao C., Zhu M., Guo Y., Sun J., Ma W., Wang X.	Genomic Survey of <i>PEBP</i> Gene Family in Rice: Identification, Phylogenetic Analysis, and Expression Profiles in Organs and under Abiotic Stresses.	Plants (Basel)	11(12)		2022	FTL1,FTL12,FTL4,HD3A,FTL13,RFT1,CRP,FTL10,RCN4,RCN3,MFT1,FTL8,FTL5,FTL9,RCN1,FTL6,FTL11,FTL7,MFT2,RCN2	FTL, FT-L1, OsFTL1, FTL1,OsFTL12, FT-L11,OsFT, osFT, FT-L 4, OsFTL4, FT-L4, FT-1, OsFT-1,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,OsFTL13,FT-L 3, OsFTL3, FTL3, FT-L3, RFT, OsRFT1,OsFTL14, FTL14,OsFTL10,Rcn4, OsRCN4,Rcn3, OsRCN3, RCN3/FDR1, FDR1, Fdr1, OsFDR1,OsMFT1,FT-L 8, OsFTL8,FT-L 5, OsFTL5, FT-L5,OsFTL9, OsFT-L9, FT-L9,Rcn1, FDR2, Fdr2, RCN1/FDR2, OsRCN1,FT-L 6, OsFTL6, FT-L6,OsFTL11,FT-L 7, OsFTL7,OsMFT2, OsMFT,Rcn2, OsRCN2
51488	35234957	Wang F., Cheng Z., Wang J., Zhang F., Zhang B., Luo S., Lei C., Pan T., Wang Y., Zhu Y., Wang M., Chen W., Lin Q., Zhu S., Zhou Y., Zhao Z., Wang J., Guo X., Zhang X., Jiang L., Bao Y., Ren Y., Wan J.	Rice STOMATAL CYTOKINESIS DEFECTIVE2 regulates cell expansion by affecting vesicular trafficking in rice.	Plant Physiol.	189(2)	567-584	2022	CESA7,DPH1,BC6,CESA3,SCD1,CESA8,BC7	OsCesA7, OsCESA7, OS_CESA07, OsCesA 7, CesA7,SCD2, OsSCD2, OsDPH1, CEF3, OsCEF3,Bc6*, Bc6, OsCesA9, CESA9, OsCESA9, OS_CESA09, OsCesA 9, CesA9, BC88, SDBC1, OsSDBC1,OsCesA3, OsCESA3, OS_CESA03,OsWD40-16, WD40-16, OsSCD1,  OsDWD31, DWD31,OsCesA8, OsCESA8, OS_CESA08, CesA8,OsCesA4, OsCESA4, CESA4, OS_CESA04, BC11, bc7t, Bc7(t), bc-7, OsCesA 4, CesA4, FC17/CESA4, FC17, OsFC17
51489	35765202	Li Y., He Y., Liu Z., Qin T., Wang L., Chen Z., Zhang B., Zhang H., Li H., Liu L., Zhang J., Yuan W.	OsSPL14 acts upstream of OsPIN1b and PILS6b to modulate axillary bud outgrowth by fine-tuning auxin transport in rice.	Plant J.			2022		
51490	35748750	Yuan G., Zou T., He Z., Xiao Q., Li G., Liu S., Xiong P., Chen H., Peng K., Zhang X., Luo T., Zhou D., Yang S., Zhou F., Zhang K., Zheng K., Han Y., Zhu J., Liang Y., Deng Q., Wang S., Sun C., Yu X., Liu H., Wang L., Li P., Li S.	SWOLLEN TAPETUM AND STERILITY 1 Is Required for Tapetum Degeneration and pollen Wall Formation in Rice.	Plant Physiol.			2022	STS1	OsSTS1
51491	35774805	Tang Y., Wang C., Wang F., Li M., Fang Y., Ji Z., Zhao K.	Development of Designer Transcription Activator-Like Effector-Based plant Growth Regulator for Higher Yield in Rice.	Front Plant Sci	13	924645	2022		
51492	35771952	Chen L., Chen P., Li S., Jiang M., Zhang H., Chen L., Huang X., Chen Y., Sun L., Dong P., Lin P., Wu Y.	Crystal Structure of the Disease-Specific Protein of Rice Stripe Virus.	J. Agric. Food Chem.	70(27)	8469-8480	2022		
51493	35696890	Hu Y., Bai J., Xia Y., Lin Y., Ma L., Xu X., Ding Y., Chen L.	Increasing SnRK1 activity with the AMPK activator A-769662 accelerates seed germination in rice.	Plant Physiol. Biochem.	185	155-166	2022		
51494	35783926	Lv Y., Ma J., Wei H., Xiao F., Wang Y., Jahan N., Hazman M., Qian Q., Shang L., Guo L.	Combining GWAS, Genome-Wide Domestication and a Transcriptomic Analysis Reveals the Loci and Natural Alleles of salt tolerance in Rice (<i>Oryza sativa</i> L.).	Front Plant Sci	13	912637	2022	MSRA4,HSP23.7,ZFP182,RS2,EIL1A,CBL8,NBL3,AKT2,DSG1,DHODH1,HKT4,MPK6,LEA17,RPK1,IDS1,TIFY10C,SLR1,CBSCLC1,SIDP366,FBOX396,SIK2,ZFP179,REP2,CYP94C2B,PUP4,DSR2,LEA8	OsMSRA4, OsMSRA4.1, MSRA4.1,OsHsp23.7, OsHSP23.7,OsZFP182,  ZOS3-21, OsZOS3-21, ZOS3, OsZOS3,OsMYB91, MYB91, OsRS2, OsMYB125, MYB125 ,EIL1, OsEIL1, EIL1a, OsEIL1a, MHZ6/OsEIL1, MHZ6, OsMHZ6,OsCBL8,OsNBL3,OsAKT2, ZMK2, OsZMK2, OsK3.1, K3.1,OsDSG1,  OsRING408, RING408,OsDHODH1, OsDHPD, DHPD,OsHKT4, OsHKT1;1, HKT1;1, OsHKT2, RNC4, OsHKT1;1-FL, OsHKT1;1-V1, OsHKT1;1-V2, OsHKT1;1-V3, OsHKT1;1-V4, OsHKT1;1-V5, OsHKT1;1-V6, OsHKT1;1-V7, OsHKT1;1-V8,OsMPK6, OsDR6, DR6, OsMPK4, MPK4, OsMAPK4, MAPK4,OsLEA17, OsLEA3-2, LEA3-2, LEA1,OsRPK1,OsIDS1, AP2/EREBP#033, AP2/EREBP33, AP2-33/IDS1, AP2-33, AP2-2, DLN104, OsDLN104,OsJAZ7, JAZ7, OsJAZ 8, OsJAZ8, Os-JAZ8, JAZ8, OsTIFY10c, OsTIFY10c/OsJAZ8,slr1-1, slr1, slr, GAI, OsGAI, OsSLR1, Os SLR1, OsRGA1, OsGRAS-18, OsGRAS-18, GRAS-18, GRAS18, SLR-1,OsCBSCLC1, OsCLC1, CLC1,OsSIDP366,OsFbox396, Os_F0578, OsMsr9, Msr9,  OsFBX257, FBX257,OsSIK2, YK14, SDRLK-SIK2, OsSDRLK-SIK2,OsZFP179, DLN27, OsDLN27,OsVPE3, VPE3, OsREP-2, REP-2alpha, REP-2beta, OsaLeg2, aLeg2,OsCYP94C2b,OsPUP4, BG3/OsPUP4, BG3, OsBG3,OsDSR2,OsLEA8, OsLEA8a, OsLEA8b, OsLEA5, LEA5
51495	35689635	Xiong L., Huang Y., Liu Z., Li C., Yu H., Shahid M.Q., Lin Y., Qiao X., Xiao J., Gray J.E., Jin J.	Small EPIDERMAL PATTERNING FACTOR-LIKE2 peptides regulate awn development in rice.	Plant Physiol.			2022	EPFL2	OsEPFL2
51496	35742880	Sun Y., Song K., Guo M., Wu H., Ji X., Hou L., Liu X., Lu S.	A NAC Transcription Factor from 'Sea Rice 86' Enhances salt tolerance by Promoting Hydrogen Sulfide Production in Rice Seedlings.	Int J Mol Sci	23(12)		2022	NACL35,LEA3-1,DCD1,DREB2A,P5CS,ERD1,RAB16A	OsNACL35,OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3, OsLEA3A, LEA3A,OsDCD1,OsDREB2A, OsDREB2a, ERF40, OsERF#040, OsERF040, OsERF40, AP2/EREBP#167, AP2/EREBP167,OsP5CS, P5CS1, OsP5CS1, OsALDH18B1, ALDH18B1, OsP5CS-1, P5CS-1,CLPD1, ClpD1, OsERD1, OSClpD, osClpD, OsClpD1, OsClpD1.1, OsClpD1.2, OsClpD1.3, OsClpD1.4 ,Rab16A, rab21, RAB21, OsRab21, OsRAB21, OsRAB-21, OsRab16A, OsLEA29, rab16A, OsRAB16A
51497	35684271	Zhang Y., Wang Y., Sun X., Yuan J., Zhao Z., Gao J., Wen X., Tang F., Kang M., Abliz B., Zhang Z., Zhang H., Wang F., Li Z.	Genome-Wide Identification of <i>MDH</i> Family Genes and Their Association with salt tolerance in Rice.	Plants (Basel)	11(11)		2022	MDH6.1,MMDH,LDH,FLO16,MDH4.1,MDH7.1,MDH8.1,MDH3.1,MDH12.1,MDH5.1,MDH1,MDH8.2	OsMDH6.1, OsLdh7, Ldh7,OsmMDH, mMDH, OsMDH1.2, MDH1.2, OsLdh1, Ldh1,OsLDH, OsMDH2.1, MDH2.1, OsLdh3, Ldh3,CMDH, OscMDH, cMDH, OsMDH, MDH, OsFLO16, OsMDH10.1, MDH10.1, OsLdh11, Ldh11,OsMDH4.1, OsLdh5, Ldh5,OsMDH7.1, OsLdh8, Ldh8,MDH, OsMDH8.1, OsLdh9, Ldh9,OsMDH3.1, OsLdh4, Ldh4,OsMDH12.1, OsLdh12, Ldh12,OsMDH5.1, OsLdh6, Ldh6,OsMDH1, OsLdh2, Ldh2,OsMDH8.2, OsLdh10, Ldh10
51498	35667655	Liu Y., Qin Z., Chen N., Bu Z., Yang Y., Hu X., Zheng H., Zhu Z., Xu T., Gao Y., Niu S., Xing J., Lin J., Liu X., Zhu Y.	The Vital Role of ShTHIC from the Endophyte OsiSh-2 in Thiamine Biosynthesis and Blast Resistance in the OsiSh-2-Rice Symbiont.	J. Agric. Food Chem.	70(23)	6993-7003	2022		
51499	35807608	Zhou Z., Fan J., Zhang J., Yang Y., Zhang Y., Zan X., Li X., Wan J., Gao X., Chen R., Huang Z., Xu Z., Li L.	<i>OsMLP423</i> Is a Positive Regulator of Tolerance to Drought and Salt Stresses in Rice.	Plants (Basel)	11(13)		2022	RAB16A,NCED3,LEA3-1,MLP423,NCED1,NCED1,ABA8OX2,ABA8OX3	Rab16A, rab21, RAB21, OsRab21, OsRAB21, OsRAB-21, OsRab16A, OsLEA29, rab16A, OsRAB16A,OSNCED3, OsNCED-3, OsNCED3, OsNCED3a, NCED3a, OsNCED4, NCED4, OsNECD2, OsNCED2b, NCED2b ,OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3, OsLEA3A, LEA3A,OsMLP423,OSNCED1, OsNCED-1, OsNCED3, OsNced3, NCED3, OsNCED9, NCED9,OsNCED1, OsCCD4a, CCD4a,OsABA8OX2, OsABA8ox2, CYP707A6, OsCYP707A6, OsAba-ox2, OsABA8ox2, OsABA8OH2, ABA8OH2, ABA8'-OH2, OsABA8'ox2, ABA8'ox2, OsABAX2, ABAX2, OsABA8'OH2, ABA8'OH2,OsABA8OX3, OsABA8ox3, CYP707A7, OsCYP707A7, OsAba-ox3, OsABA8ox3, OsABA8'ox3, ABA8'ox3, OsABAX3, ABAX3, OsABA8'OH3, ABA8'OH3
51500	35650544	Zhou S., Huang K., Zhou Y., Hu Y., Xiao Y., Chen T., Yin M., Liu Y., Xu M., Jiang X.	Degradome sequencing reveals an integrative miRNA-mediated gene interaction network regulating rice seed vigor.	BMC Plant Biol.	22(1)	269	2022	KOB1,NAC104,NAM,RSR1,NAC88,TIR1,MIR164C,Y37,MIR5075,NAC1,1CYSPRXA,G4,RST1,GAPC,TIL1,NAC60,CIP73,PSK3	OsKOB1, OsAKR3, AKR3,OMTN6, ONAC104, DLN206, OsDLN206,OsNAM, OMTN5, ONAC092, ONAC92, NAC92, CUC2, OsNAM/CUC2, DLN165, OsDLN165, OsCUC1, CUC1, OsNAM/ OMTN5, OsNAM1, NAM1,AP2/EREBP#090, AP2/EREBP90, OsTOE1, TOE1, qHD5, AP2-1, AP2/EREBP/RSR1, OsRSR1, DLN130, DLN130a, DLN130b, OsDLN130, OsDLN130a, OsDLN130b,ONAC088, ONAC88, OsNAC52, NAC52,OsTIR1, OsFbox248, Fbox248, Os_F071, AFB,  OsFBL21, FBL21,miR164c, osa-miR164c,NAC11, ONAC011, ONAC11, OMTN4, OsY37, OsY37N, OsY37I, OsNAC1, DLN172, OsDLN172, OsNAC092, NAC092, OsNAC92, NAC92,miR5075, osa-miR5075, osa-MIR5075,OsNAC1, ONAC027, ONAC27, NAC27, OMTN1, OsNAC1/ONAC027, DLN60, OsDLN60, OsORE1,Os1-CysPrxA, 1-CysPrxA, OsPER1, PER1,OsG4, BG4, OsBG4,OsARF10, ARF10, OsARF18, ARF18, OsRST1, GLR1, OsGLR1,OsGapC3, OGapC3, OsGAPDH1, GAPDH1, OsGapC1,NAC2, OsNAC2, ONAC004, ONAC4, ONAC034, ONAC34, ONAC058, ONAC58, OMTN2, Ostil1, OsNAC2/ONAC004, OsORE1.2, DLN113, OsDLN113,ONAC060, ONAC60, OMTN3, OsNAC60, DLN265, OsDLN265,OsCIP73, OsCIP73_like,OsPSK3, GREP2, OMT9, OsPSK5, PSK5
51501	35736513	Hong W.J., Kim E.J., Yoon J., Silva J., Moon S., Min C.W., Cho L.H., Kim S.T., Park S.K., Kim Y.J., Jung K.H.	A myosin XI adaptor, TAPE, is essential for pollen tube elongation in rice.	Plant Physiol.			2022	_,RFA3,TAPE,SDRLK71	,rfa3*, REFA3, refa3, EF1a,OsTAPE,SDRLK-71, OsSDRLK-71, OsSDRLK71, OsPLIM2b, PLIM2b
51502	35682997	Li J., Chen L., Ding X., Fan W., Liu J.	Transcriptome Analysis Reveals Crosstalk between the Abscisic Acid and Jasmonic Acid Signaling Pathways in Rice-Mediated Defense against <i>Nilaparvata lugens</i>.	Int J Mol Sci	23(11)		2022	PYL/RCAR9,ACX3,SAPK1,OG1,KAT1,AOS2,LOX1,ACX4,NCED1,PP2C8,TIFY11C	OsPYL/RCAR9, PYL9, OsPYL9, OsPYL2, PYL2,OsACX3, OsACOX3, ACOX3,OsSAPK1, OsSnRK2.1, SnRK2.1,OsOPR7, OPR7, OsOPR13, OsOPR3, OsOPR5, OsOPR9, OsOPR08-1,  OPR13, OPR3, OPR5, OPR9, OPR08-1, OsOPR8, OPR8,OsI57, I57, OsKAT1, OsACAA1, ACAA1,OsAOS2, CYP74A2, OsAOS, OsAOS1,OsLOX1, OsLOX5, OsLOX2, LOX2,OsACX4, OsACOX1, ACOX1,OsNCED1, OsCCD4a, CCD4a,OsPP2C08, PP2C08, OsPP2C8, OsPP12,OsJAZ2, JAZ2, OsJAZ 11, OsJAZ11, Os-JAZ11, JAZ11, OsTIFY11c, OsJAZ1, JAZ1
51503	35723564	Lee S.J., Kang K., Lim J.H., Paek N.C.	Natural alleles of CIRCADIAN CLOCK ASSOCIATED1 contribute to rice cultivation by fine-tuning flowering time.	Plant Physiol.			2022		
51504	35610056	Shim Y., Lim C., Seong G., Choi Y., Kang K., Paek N.C.	The AP2/ERF transcription factor LATE FLOWERING SEMI-DWARF suppresses long-day-dependent repression of flowering.	Plant Cell Environ.	45(8)	2446-2459	2022	HD3A,LFL1,EF1,RFT1,LFS	Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,OsLFL1, OsSTA29, STA29,Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,FT-L 3, OsFTL3, FTL3, FT-L3, RFT, OsRFT1,AP2/EREBP#109, AP2/EREBP109, OsAP2/EREBP109, OsLFS
51505	35795345	Zheng K., Pang L., Xue X., Gao P., Zhao H., Wang Y., Han S.	Genome-Wide Comprehensive Survey of the Subtilisin-Like Proteases Gene Family Associated With Rice Caryopsis Development.	Front Plant Sci	13	943184	2022	SUB21,SUB48,SUB49,SUB36,SUB28,SUB35,SUB59,SUB37,SUB30,SUB64,SUB15,SUB63,SUB14,SUB29,SUB34,SUB4,SUB3,SUB23,SUB46,SUB25,SUB47,SUB20,SUB43,SUB39,SUB50,SUB40,SUB45,SUB8,SUB44,SUB33,SUB22,SUB13,SUB57,SUB51,SUB27,SUB18,SUB19,SUB55,SUB52,SUB60,SUB17,SUB41,SUB24,SUB10,SUB58,SUB38,SUB16,SUB2,SUB32,SUB11,SUB12,SUB61,MSP,SUB54,HWI2,SUB53,SUB31,SUB62,SUB7,SUB56,SDD1,RSP1	OsSub21,OsSub48,OsSub49,OsSub36,OsSub28,OsSub35,OsSub59,OsSub37,OsSub30,OsSUB64,OsSub15,OsSub63,OsSub14,OsSub29,OsSub34,OsSub4,OsSub3,OsSub23,OsSub46,OsSub25,OsSub47,OsSP1, SP1, OsSub20,OsSub43,OsSub39,OsSub50,OsSub40,OsSub45,OsSub8,OsSub44,OsSub33,OsSub22, OsSASP, SASP ,OsSub13,OsSub57,OsSub51,OsSub27,OsSub18,OsSub19,OsSub55,OsSub52,OsSub60,OsSub17,OsSub41,OsSub24,OsSub10,OsSub58,OsSub38,OsSub16,OsSub2, SLP1, OsSLP1,OsSub32,OsSub11,OsSub12,OsSub61,OsSub42, SUB42, OsSP2, OS-MSP, OsMSP,OsSub54,Hwi2, OsHWI2, OsSub9, SUB9,OsSub53,OsSub31,OsSub62,OsSub7,OsSub56,  OsRING474, RING474,OsSDD1, OsSub26, SUB26,OsRSP1, OsSub5, SUB5, OsSub6, SUB6
51506	35937538	Miyata K., Hasegawa S., Nakajima E., Nishizawa Y., Kamiya K., Yokogawa H., Shirasaka S., Maruyama S., Shibuya N., Kaku H.	OsCERK2/OsRLK10, a homolog of OsCERK1, has a potential role for chitin-triggered immunity and arbuscular mycorrhizal symbiosis in rice.	Plant Biotechnol (Tokyo)	39(2)	119-128	2022	CERK1,RLCK276,DMI3	OsCERK1, OsLysM-RLK9, Os-CERK1, Os-LysM-RLK9, OsLysMRLK9, OsCERK1/OsLYK9, OsLYK9, LYK9,OsLysM-RLK10, LysM-RLK10, OsRLCK276, OsCERK2/OsRLK10, OsCERK2, OsRLK10, CERK2, RLK10,OsDMI3, OsCCaMK1, OsCCaMK, OsCCAMK, CCAMK
51507	35812953	Zeng F., Zhu L., Wang G., Liang Y., Ma D., Wang J.	Higher CO2 Assimilation in Selected Rice Recombinant Inbred Lines Is Driven by Higher CO2 Diffusion and Light Use Efficiency Related to Leaf Anatomy and mesophyll cell Density.	Front Plant Sci	13	915050	2022	LHCA1,PIS1,PSBA,CAB2R,LHCA2,PSBD,LHCB3,LHCB2.1,PSBO,LHCA3,PSAA	OsLhca1, Lhca1,Orysa;Rb2, RBR2, OsRBR1, RBR1, OsPIS1, RB2, OsRB2, RB1, OsRB1,PsbA, psbA, OsPsbA, PSBD1, OsPSBD1, psbD1,Oscab2R, CAB-2, OsLhcp, Lhcb1, Lhcb1a, OsLhcb1, OsLhcb1a ,lhcA, Lhca2, OsLhca2,psbD, D2, OsPsbD1, OsPsbD2,Lhcb3, OsLhcb3,LHCB, LHCP II, Lhcb2, OsLhcb2, Lhcb2.1, OsLhcb2.1 ,PsbO, psbO, OsPSBO,OsLhca3, Lhca3,PsaA, psaA, PsAA1, psaA1
51508	35695778	Xiao L., Shi Y., Wang R., Feng Y., Wang L., Zhang H., Shi X., Jing G., Deng P., Song T., Jing W., Zhang W.	The transcription factor OsMYBc and an E3 ligase regulate expression of a K+ transporter during salt stress.	Plant Physiol.			2022		
51509	35689518	Li C., Li Y., Xu P., Liang G.	OsIRO3 negatively regulates Fe homeostasis by repressing the expression of OsIRO2.	Plant J.			2022		
51510	35294037	Wu Y., Wang L., Ansah E.O., Peng W., Zhang W., Li P., An G., Xiong F.	The sucrose transport regulator OsDOF11 mediates cytokinin degradation during rice development.	Plant Physiol.	189(2)	1083-1094	2022		
51511	35742811	Irshad F., Li C., Wu H.Y., Yan Y., Xu J.H.	The Function of DNA Demethylase Gene ROS1a Null Mutant on Seed Development in Rice (<i>Oryza Sativa</i>) Using the CRISPR/Cas9 System.	Int J Mol Sci	23(12)		2022	GLUA3,GLUB1,GLUB5,CESA3,GLUA1,CESA2,GLUC,GLU7,TA2,FLO5,CESA8,ALK,GLUB6,GLUB1A,GLUA2,CESA6	Glua3*, GLUA-3, GT22, GT3, Glu21, GluA-3, OsEnS-47, EnS-47, GLU3,GluB1, GluB1-A, GluB-1a, GluB-1, OsGluB1, GluB-1b, OsGluB-1b, GLUB1B,GluB5, GLU2.3 ,OsCesA3, OsCESA3, OS_CESA03,Glua1*, Glua1, GLUA-1, GluA-1, GluA1, Glu19, OsEnS-16,OsCesA2, OsCESA2, OS_CESA02,GluC, OsEnS-36, EnS-36, GLU2.2, GluC-1, OsGluC-1,Glu7*(GluB2), Glu7, GluB2, GLUB2, GLUB-2, GluB-2, GluB-7, GLUB7,ROS1A, ROS1a, DME1, OsROS1A, OsROS1, ROS1, mOsROS1, ROS1A/DNG702, DNG702, OsDNG702,OsSSIIIa, SSIII-2, OsSSIII-2, OsSS3A, SS3A, SS3a, OsSSSIIIa, SSIIIa, Flo5,OsCesA8, OsCESA8, OS_CESA08, CesA8,alk, SSII-3, OsSSIIa, OsSSII-3, SSIIa, SSS2A, OsSSIIaChr6, SS2a,OsEnS-32, EnS-32, GluB6, OsGluB6,GluB, GluB-1a, OsGluB-1a, GluB-1b, GluB1, OsGluB1,Glua2*, Glua2, GLUA-2, GluA-2, Glu20, GluA2, OsEnS-137,OsCesA6, OsCESA6, OS_CESA06
51512	35743864	Xu Q., Wei Q., Kong Y., Zhu L., Tian W., Huang J., Pan L., Jin Q., Zhang J., Zhu C.	Unearthing the Alleviatory Mechanisms of Brassinolide in Cold Stress in Rice.	Life (Basel)	12(6)		2022	SODCC2,FER1,COLD1,MYB48,BHLH10,WRKY45,LTI6A	Cu/Zn-SOD, Cu/Zn- SOD, OsCu-ZnSOD2, Cu-ZnSOD2, OsSODB, OsSOD3, SodCc2, Os SodCc2, sodB, OsSodB, RSODB, OssodCc1, OsCSD1.1, CSD1.1, OsCDS1, OsSOD3-CU/Zn, SOD3-CU/Zn, CuZnSOD2, Cu/ZnSOD2, OsCu/ZnSOD2, OsCSD1, CSD1, CuZnSOD1, OsCuZnSOD2, OsCSD4, CSD4, OsCSD3, CSD3, Cu/Zn-SOD3,OsFER1, OsFer1 ,OsCOLD1,OsMYB48, OsMYB48-1, OsMYB48-2, OsMYB59, MYB59, Os2R_MYB19, 2R_MYB19 ,OsICE1, ICE1, OsbHLH010, bHLH010, OsMYL1, MYL1, bHLH116, OsMYC3, MYC3 ,OsWRKY45, OsWRKY45-1, OsWRKY45-2, WRKY45-1, WRKY45-2,OsLti6a, Lti6a, OsLTI6A, OsRCI2-10
51513	35662326	Zhang Y.J., Zhang Y., Zhang L.L., He J.X., Xue H.W., Wang J.W., Lin W.H.	OsGATA6 regulates rice heading date and grain number per panicle.	J. Exp. Bot.			2022		
51514	35736751	Suzuki G., Fukuda M., Lucob-Agustin N., Inukai Y., Gomi K.	The Mutation of Rice MEDIATOR25, OsMED25, Induces Rice Bacterial Blight Resistance through Altering Jasmonate- and Auxin-Signaling.	Plants (Basel)	11(12)		2022	ARF6A,_,SAUR33,GNS7,POXGX9,ARF6B,HIPP27,ILA1,SAUR5,LC1,BHLH9,POXA,ARF7B,_,ARF7A,_,OSM1,PFT1,HYPRP33,TLD1,IAA1,SAUR11,ARF17,LTP2.9	OsARF6a, OsARF6, ARF6,,OsSAUR33,Gns7, OsGns7,POXgX9, OsPOXgX9, prx112, OsPrx112,OsARF6b, OsARF25, ARF25,OsHIPP27, OsaHIP27, HIP27 ,OsILA1, OsACTPK4, ACTPK4, OsMAPKKK43, MAPKKK43,OsSAUR5,OsGH3-1, GH3-1, OsGH3.1,GH3.1, OsLC1,OsbHLH009, bHLH009, OsMYC2, MYC2,poxA, prx126, OsPrx126, prxRPA, RPA,OsARF7b, OsARF21, DLN216, OsDLN216,,OsARF7a, OsARF19, ARF19, OsARF7,,OsOSM1,OsPFT1, OsMED25_1, MED25_1, OsMED25, MED25, OsvWA27, vWA27,OsHyPRP33, HyPRP33,OsGH3-13, GH3-13, TLD1/OsGH3.13, TLD1, OsGH3.13, TLD2,OsIAA1, OsIAA4,OsSAUR11,OsARF17,OsLTP2.9, OsLtpII.9, LtpII.9
51515	35294032	Hu Y., Liu J., Lin Y., Xu X., Xia Y., Bai J., Yu Y., Xiao F., Ding Y., Ding C., Chen L.	Sucrose nonfermenting-1-related protein kinase 1 regulates sheath-to-panicle transport of nonstructural carbohydrates during rice grain filling.	Plant Physiol.	189(3)	1694-1714	2022		
51516	35592995	Chen X., Duan Y., Qiao F., Liu H., Huang J., Luo C., Chen X., Li G., Xie K., Hsiang T., Zheng L.	A secreted fungal effector suppresses rice immunity through host histone hypoacetylation.	New Phytol.	235(5)	1977-1994	2022		
51517	35742907	Sun C., Liu S., He C., Zhong C., Liu H., Luo X., Li K., Zhang K., Wang Q., Chen C., Tang Y., Yang B., Chen X., Xu P., Zou T., Li S., Qin P., Wang P., Chu C., Deng X.	Crosstalk between the Circadian Clock and Histone Methylation.	Int J Mol Sci	23(12)		2022	CCA1,GI,PRR59,LVP1,PRR95,CRY1A	OsCCA1, OsLHY, LHY, LHY-like_chr.8, COC1, DLN203, OsDLN203, LEM1, OsLEM1, Nhd1, OsNhd1,OsGI, Gi, Os-GI,OsPRR59, Os-PRR59, Prr5, OsPRR5, OsCCT38, CCT38,SDG724, OsSDG724, OsLVP1, OsSET34,OsPRR95, Os-PRR95, Prr2, OsPRR2, OsCCT33,OsCRY1a, OsCRY1, CRY1a, CRY2, OsCCT1a, CCT1a
51518	35698268	Hong J., Rosental L., Xu Y., Xu D., Orf I., Wang W., Hu Z., Su S., Bai S., Ashraf M., Hu C., Zhang C., Li Z., Xu J., Liu Q., Zhang H., Zhang F., Luo Z., Chen M., Chen X., Betts N., Fernie A., Liang W., Chen G., Brotman Y., Zhang D., Shi J.	Genetic architecture of seed glycerolipids in Asian cultivated rice.	Plant Cell Environ.			2022		
51519	35682970	Xu X., Hummel S., Harter K., Kolukisaoglu ?., Riemann M., Nick P.	The Minus-End-Directed Kinesin OsDLK Shuttles to the Nucleus and Modulates the Expression of Cold-Box Factor 4.	Int J Mol Sci	23(11)		2022	DLK	OsDLK
51520	35684964	Yang L., Chen Y., Xu L., Wang J., Qi H., Guo J., Zhang L., Shen J., Wang H., Zhang F., Xie L., Zhu W., L? P., Qian Q., Yu H., Song S.	The OsFTIP6-OsHB22-OsMYBR57 module regulates drought response in rice.	Mol Plant	15(7)	1227-1242	2022	HB22,C2DP39	OsHB22,OsC2DP39, OsFTIP6, FTIP6
51521	35706359	Lou Q., Guo H., Li J., Han S., Khan N.U., Gu Y., Zhao W., Zhang Z., Zhang H., Li Z., Li J.	Cold-adaptive evolution at the reproductive stage in Geng/japonica subspecies reveals the role of OsMAPK3 and OsLEA9.	Plant J.			2022		
51522	35812967	Jiang J., Zhang Y., Li Y., Hu C., Xu L., Zhang Y., Wang D., Hong D., Dang X.	An Analysis of Natural Variation Reveals That <i>OsFLA2</i> Controls Flag leaf angle in Rice (<i>Oryza sativa</i> L.).	Front Plant Sci	13	906912	2022	 LIC,FLA2	OsC3H46, C3H46, OsLIC, OsFLA6, FLA6,OsFLA2
51523	35294556	Li Y., Zhou J., Li Z., Qiao J., Quan R., Wang J., Huang R., Qin H.	SALT AND ABA RESPONSE ERF1 improves seed germination and salt tolerance by repressing ABA signaling in rice.	Plant Physiol.	189(2)	1110-1127	2022		
51524	35743079	Guo W., Chen S., Xu Y., Cai X.	OsASR6 Alleviates Rice Resistance to <i>Xanthomonas oryzae</i> via Transcriptional Suppression of <i>OsCIPK15</i>.	Int J Mol Sci	23(12)		2022	ASR2,_,WRKY76,CIPK15,ACS2,ASN1,GNP1,SAMT,ERF51,SARD1,WRKY45,CIPK05,JMT1,JIOSPR10,PIBH8,SD1	OsAsr2, OsASR4, ASR4, OsASR6, ASR6,Hsp90, OsHsp90,OsWRKY76, OsWRKY76.1, OsWRKY76.2, OsWRKY76.3,OsCIPK15, OsSnRK3.31, SnRK3.31,OsACS2, Os-ACS2,OsASN1, OsAS1, AS1,GA20OX1, OsGA20ox1, 20ox1, GA20ox-1, ga20ox1, Os20ox, C20OX2, OsGA20ox2, OsGA20ox-1, GA20ox1, OsGNP1,OsSAMT, OsJMT1, JMT1, Os4OCLAMT2, 4OCLAMT2,OsERF#051, OsERF051, OsERF51, DERF11, OsDERF11, AP2/EREBP#156, AP2/EREBP156, RAP2-13, OsRAP2-13,OsSARD1,OsWRKY45, OsWRKY45-1, OsWRKY45-2, WRKY45-1, WRKY45-2,OsCIPK05, CIPK5, OsCIPK5, OsSTA7, OsSnRK3.2, SnRK3.2,OsJMT1, JAMT1, OsJAMT1,JIOsPR10, OsPR10, PR10, OsJiPR10, JiPR10, OsPR10c, PR10c,Pib-H8, PibH8, OsPibH8,sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2, OsPHQ1, OsPHq1, PHq1
51525	35705042	Meng F., Zhao Q., Zhao X., Yang C., Liu R., Pang J., Zhao W., Wang Q., Liu M., Zhang Z., Kong Z., Liu J.	A rice protein modulates endoplasmic reticulum homeostasis and coordinates with a transcription factor to initiate blast disease resistance.	Cell Rep	39(11)	110941	2022	NAC70,BZIP50,PR1B,HLP1,PR10A,WRKY45,IRE1	ONAC070, ONAC70, OsNTL6, NTL6, OsNAC78,OsbZIP60, bZIP50, OsbZIP50, OsbZIP74, bZIP74, OsbZIP50-S,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1, OsPR1a, PR1a,OsHLP1,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsWRKY45, OsWRKY45-1, OsWRKY45-2, WRKY45-1, WRKY45-2,OsIRE1, OsIre1
51526	35699777	Yan Z., Yang M.Y., Zhao B.G., Li G., Chao Q., Tian F., Gao G., Wang B.C.	OsAPL controls the nutrient transport systems in the leaf of rice (Oryza sativa L.).	Planta	256(1)	11	2022	GPA8,RHA1,VHA-E2,APL,RHA6,RHA5,RHA3	v-ATP-E, Osv-ATP-E, OsVHA-E1, VHA-E1, OsGPA8, OsRHA4, RHA4,OsRHA1,OsVHA-E2, OsRHA2, RHA2,OsAPL,AtpB, OsRHA6,OsRHA5,OsRHA3
51527	35248615	Chen H., Zhang Q., Lv W., Yu X., Zhang Z.	Ethylene positively regulates Cd tolerance via reactive oxygen species scavenging and apoplastic transport barrier formation in rice.	Environ. Pollut.	302	119063	2022		
51528	35263144	Lin H., Wang M., Chen Y., Nomura K., Hui S., Gui J., Zhang X., Wu Y., Liu J., Li Q., Deng Y., Li L., Yuan M., Wang S., He S.Y., He Z.	An MKP-MAPK protein phosphorylation cascade controls vascular immunity in plants.	Sci Adv	8(10)	eabg8723	2022		
51529	35040954	Murakami T., Katsuragi Y., Hirai H., Wataya K., Kondo M., Che F.S.	Distribution of flagellin CD2-1, flg22, and flgII-28 recognition systems in plant species and regulation of plant immune responses through these recognition systems.	Biosci. Biotechnol. Biochem.	86(4)	490-501	2022		
51530	35434188	Dolui A.K., Latha M., Vijayaraj P.	Activity-based Protein Profiling of Serine Hydrolase Superfamily Enzymes.	Bio Protoc	12(6)	e4356	2022		
51531	35244216	Wu N., Yao Y., Xiang D., Du H., Geng Z., Yang W., Li X., Xie T., Dong F., Xiong L.	A MITE variation-associated heat-inducible isoform of a heat-shock factor confers heat tolerance through regulation of JASMONATE ZIM-DOMAIN genes in rice.	New Phytol.	234(4)	1315-1331	2022		
51532	35325440	Liu J., Zhou Y., Wang L., Zhang Q., Shen Y., Jiang W., Chen X., He H., Hu L.	Cytological Analysis and Fine Mapping of PAA1 (Post-meiosis Abnormal Anther 1) Mutant with Abnormal Tapetum and Microspore Development.	Biochem. Genet.			2022		
51533	35314704	Cesari S., Xi Y., Declerck N., Chalvon V., Mammri L., Pugni?re M., Henriquet C., de Guillen K., Chochois V., Padilla A., Kroj T.	New recognition specificity in a plant immune receptor by molecular engineering of its integrated domain.	Nat Commun	13(1)	1524	2022	PIKP,RGA5	Pik-p, Pi-kp, Pikp, Pikp-1, Pikp-2,Os11gRGA5, OsRGA5, RGA5-A, RGA5-B, Pi5, Pias-2
51534	35275626	Sobecks B.L., Chen J., Shukla D.	Dual Role of Strigolactone Receptor Signaling Partner in Inhibiting Substrate Hydrolysis.	J Phys Chem B	126(11)	2188-2195	2022		
51535	35272193	Huang R., Li Y., Li F., Yin X., Li R., Wu Z., Liang X., Li Z.	Phosphate fertilizers facilitated the Cd contaminated soil remediation by sepiolite: Cd mobilization, plant toxicity, and soil microbial community.	Ecotoxicol. Environ. Saf.	234	113388	2022		
51536	35248762	Sun K., Huang M., Zong W., Xiao D., Lei C., Luo Y., Song Y., Li S., Hao Y., Luo W., Xu B., Guo X., Wei G., Chen L., Liu Y.G., Guo J.	Hd1, Ghd7, and DTH8 synergistically determine the rice heading date and yield-related agronomic traits.	J Genet Genomics	49(5)	437-447	2022		
51537	35344760	Wang G., Zeng F., Song P., Sun B., Wang Q., Wang J.	Effects of reduced chlorophyll content on photosystem functions and photosynthetic electron transport rate in rice leaves.	J. Plant Physiol.	272	153669	2022		
51538	35336150	Gao G., Zhang Y., Niu S., Chen Y., Wang S., Anwar N., Chen S., Li G., Ma T.	Reclassification of <i>Enterobacter</i> sp. FY-07 as <i>Kosakonia oryzendophytica</i> FY-07 and Its Potential to Promote Plant Growth.	Microorganisms	10(3)		2022		
51539	35306213	Fu W.Q., Xu M., Zhang A.Y., Sun K., Dai C.C., Jia Y.	Remediation of phenanthrene phytotoxicity by the interaction of rice and endophytic fungus P. liquidambaris in practice.	Ecotoxicol. Environ. Saf.	235	113415	2022		
51540	35254068	Qi X., Chen L., Zhang Y., Gao W., Chen L., Wang D., Tang L., Wang Z., Wang N.N., Fan Z.	Methoxyacrylate Fungicide Candidate CL-15C Also Functions as a Plant Elicitor in <i>Arabidopsis thaliana</i> and <i>Oryza sativa</i> L.	J. Agric. Food Chem.	70(10)	3142-3150	2022		
51541	35344114	Majumder B., Das S., Pal B., Biswas A.K.	Influence of arsenate imposition on modulation of antioxidative defense network and its implication on thiol metabolism in some contrasting rice (Oryza sativa L.) cultivars.	Biometals	35(3)	451-478	2022		
51542	35328012	Awad-Allah MMA., Elekhtyar N.M., El-Abd MA., Abdelkader M.F.M., Mahmoud M.H., Mohamed A.H., El-Diasty MZ., Said M.M., Shamseldin S.A.M., Abdein M.A.	Development of New Restorer Lines Carrying Some Restoring Fertility Genes with Flowering, Yield and Grains Quality Characteristics in Rice (<i>Oryza sativa</i> L.).	Genes (Basel)	13(3)		2022		
51543	35323548	Pe?alver-Cruz A., Horgan F.G.	Interactions between Rice Resistance to Planthoppers and Honeydew-Related Egg Parasitism under Varying Levels of Nitrogenous Fertilizer.	Insects	13(3)		2022		
51544	34893891	Suzuki Y., Ishiyama K., Yoon D.K., Takegahara-Tamakawa Y., Kondo E., Suganami M., Wada S., Miyake C., Makino A.	Suppression of chloroplast triose phosphate isomerase evokes inorganic phosphate-limited photosynthesis in rice.	Plant Physiol.	188(3)	1550-1562	2022		
51545	35409103	Sun Y., Fu M., Wang L., Bai Y., Fang X., Wang Q., He Y., Zeng H.	<i>OsSPLs</i> Regulate Male Fertility in Response to Different Temperatures by Flavonoid Biosynthesis and Tapetum PCD in PTGMS Rice.	Int J Mol Sci	23(7)		2022		
51546	35318142	Raheja Y., Singh V., Kaur B., Basotra N., Di Falco M., Tsang A., Singh Chadha B.	Combination of system biology and classical approaches for developing biorefinery relevant lignocellulolytic Rasamsonia emersonii strain.	Bioresour. Technol.	351	127039	2022		
51547	35361859	Fu Y., Zhao H., Huang J., Zhu H., Luan X., Bu S., Liu Z., Wang X., Peng Z., Meng L., Liu G., Zhang G., Wang S.	Dynamic analysis of QTLs on plant height with single segment substitution lines in rice.	Sci Rep	12(1)	5465	2022		
51548	35260690	Anandan A., Nagireddy R., Sabarinathan S., Bhatta B.B., Mahender A., Vinothkumar M., Parameswaran C., Panneerselvam P., Subudhi H., Meher J., Bose L.K., Ali J.	Multi-trait association study identifies loci associated with tolerance of low phosphorus in Oryza sativa and its wild relatives.	Sci Rep	12(1)	4089	2022		
51549	35487665	Yan H., Wang Y., Chen B., Wang W., Sun H., Sun H., Li J., Zhao Q.	OsCKX2 regulates phosphate deficiency tolerance by modulating cytokinin in rice.	Plant Sci.	319	111257	2022		
51550	34739330	Jia Y., Jia M.H., Yan Z.	Mapping Blast resistance Genes in Rice Varieties 'Minghui 63' and 'M-202'.	Plant Dis.	106(4)	1175-1182	2022		
51551	35152411	Jathar V., Saini K., Chauhan A., Rani R., Ichihashi Y., Ranjan A.	Spatial control of cell division by GA-OsGRF7/8 module in a leaf explaining the leaf length variation between cultivated and wild rice.	New Phytol.	234(3)	867-883	2022		
51552	34995015	Shen G., Hu W., Wang X., Zhou X., Han Z., Sherif A., Ayaad M., Xing Y.	Assembly of yield heterosis of an elite rice hybrid is promising by manipulating dominant quantitative trait loci.	J Integr Plant Biol	64(3)	688-701	2022		
51553	35408887	Hou X., Chen M., Chen Y., Hou X., Jia Z., Yang X., Zhang J., Liu Y., Ye N.	Identifying QTLs for grain size in a Colossal Grain Rice (<i>Oryza sativa</i> L.) Line, and Analysis of Additive Effects of QTLs.	Int J Mol Sci	23(7)		2022		
51554	35465204	Panda D., Mohanty S., Das S., Sah R.P., Kumar A., Behera L., Baig M.J., Tripathy B.C.	The role of phytochrome-mediated gibberellic acid signaling in the modulation of seed germination under low light stress in rice (<i>O. sativa</i> L.).	Physiol Mol Biol Plants	28(3)	585-605	2022		
51555	35275352	Kumar S., Agrawal A., Seem K., Kumar S., Vinod K.K., Mohapatra T.	Transcriptome analysis of a near-isogenic line and its recurrent parent reveals the role of Pup1 QTL in phosphorus deficiency tolerance of rice at tillering stage.	Plant Mol. Biol.	109(1-2)	29-50	2022		
51556	35321642	Huang S., Liu M., Chen G., Si F., Fan F., Guo Y., Yuan L., Yang F., Li S.	Favorable QTLs from Oryza longistaminata improve rice drought resistance.	BMC Plant Biol.	22(1)	136	2022		
51557	35289406	Jiang D., Wu H., Cai H., Chen G.	Silicon confers aluminium tolerance in rice via cell wall modification in the root transition zone.	Plant Cell Environ.	45(6)	1765-1778	2022		
51558	35292419	Ge J., Wang J., Pang H., Li F., Lou D., Fan W., Liu Z., Li J., Li D., Nong B., Zhang Z., Wang Y., Huang J., Xing M., Nie Y., Xiao X., Zhang F., Wang W., Xu J., Kim S.R., Kohli A., Ye G., Qiao W., Yang Q., Zheng X.	Genome-wide selection and introgression of Chinese rice varieties during breeding.	J Genet Genomics	49(5)	492-501	2022		
51559	35246603	Wu W., Yi G., Lv X., Mao Q., Wei T.	A leafhopper saliva protein mediates horizontal transmission of viral pathogens from insect vectors into rice phloem.	Commun Biol	5(1)	204	2022		
51560	35347474	Panibe J.P., Wang L., Lee Y.C., Wang C.S., Li W.H.	Identifying mutations in sd1, Pi54 and Pi-ta, and positively selected genes of TN1, the first semidwarf rice in Green Revolution.	Botanical Studies	63(1)	9	2022		
51561	35328589	Jiang H., Zhang A., Liu X., Chen J.	grain size Associated Genes and the Molecular Regulatory Mechanism in Rice.	Int J Mol Sci	23(6)		2022		
51562	35338943	Shaw B.P., Sekhar S., Panda B.B., Sahu G., Chandra T., Parida A.K.	Biochemical and molecular processes contributing to grain filling and yield in rice.	Plant Physiol. Biochem.	179	120-133	2022		
51563	35279561	Li Z., Tian Y., Wang B., Peng R., Xu J., Fu X., Han H., Wang L., Zhang W., Deng Y., Wang Y., Gong Z., Gao J., Yao Q.	Enhanced phytoremediation of selenium using genetically engineered rice plants.	J. Plant Physiol.	271	153665	2022		
51564	35314312	Ishfaq Bhat M., Shahi N.C., Lohani U.C., Singh S., Sidique Q., Sirohi R.	Microwave irradiation assisted intensive and quick delignification of lignocellulosic biomass, and confirmation by spectral, morphological and crystallinity characterization.	Bioresour. Technol.	351	127029	2022		
51565	35247122	Hori K., Okunishi T., Nakamura K., Iijima K., Hagimoto M., Hayakawa K., Shu K., Ikka T., Yamashita H., Yamasaki M., Takeuchi Y., Koyama S., Tsujii Y., Kayano T., Ishii T., Kumamaru T., Kawagoe Y., Yamamoto T.	Genetic Background Negates Improvements in Rice Flour Characteristics and Food Processing Properties Caused by a Mutant Allele of the PDIL1-1 Seed Storage Protein Gene.	Rice (N Y)	15(1)	13	2022		
51566	35262787	Ntemafack A., Ahmed S., Kumar A., Chouhan R., Kapoor N., Bharate S.B., Hassan Q.P., Gandhi S.G.	Plant growth promoting potential of butyl isobutyl phthalate and Streptomyces sp. from Rumex dentatus on rice.	Appl. Microbiol. Biotechnol.	106(7)	2603-2617	2022		
51567	35328712	Liu Z., Ma C., Hou L., Wu X., Wang D., Zhang L., Liu P.	Exogenous SA Affects Rice Seed Germination under Salt Stress by Regulating Na+/K+ Balance and Endogenous GAs and ABA Homeostasis.	Int J Mol Sci	23(6)		2022		
51568	35232394	Liu H., Xin W., Wang Y., Zhang D., Wang J., Zheng H., Yang L., Nie S., Zou D.	An integrated analysis of the rice transcriptome and lipidome reveals lipid metabolism plays a central role in rice cold tolerance.	BMC Plant Biol.	22(1)	91	2022		
51569	35406847	Shah S., Tsuneyoshi H., Ichitani K., Taura S.	QTL Analysis Revealed One Major Genetic Factor Inhibiting Lesion Elongation by Bacterial Blight (<i>Xanthomonas oryzae</i> pv. <i>oryzae</i>) from a <i>japonica</i> Cultivar Koshihikari in Rice.	Plants (Basel)	11(7)		2022		
51570	35290527	Liu M., Fan F., He S., Guo Y., Chen G., Li N., Li N., Yuan H., Si F., Yang F., Li S.	Creation of Elite Rice with High-Yield, Superior-Quality and High Resistance to Brown Planthopper Based on Molecular Design.	Rice (N Y)	15(1)	17	2022	LK3,GW7,HD5,SBE3,SSIVB,WX1,BPH9,GN1A,ALK,SSIIIB,APO1,GN8.1,GHD7,BPH6	lk3(t), lk3(t)*, SG3, GS3, SG3-GS3, OsGW3, OsGS3, RGG3/GS3/Mi/OsGGC1, RGG3, Mi, OsGGC1, GGC1, OsSYL3, SYL3, TT2, OsTT2,GL7, OsGL7, OsGW7, qGW7, qGL7, SLG7, GL7/GW7/SLG7, qPY7, GL7/SLG7, Chalk7, OsChalk7,Hd5(t)*, Hd5, qHD5, HAP3H, OsHAP3H, NF-YB, CBF-A, DTH8 , qHD5(t)*, Ghd8, Ghd8/DTH8, Lhd1, NF-YB11, OsNF-YB11, NFYB11, LH8, DTH8/Ghd8, RH8, DTH8/Ghd8/LHD1, CAR8, DTH8/Ghd8/ OsHAP3H, EF8, OsEF8,SBEIII*, SBEIII, Sbe3, RBE3, QEIIa, QEIIA, BEIIb, BEIIB, SBEIIb, OsBEIIb, sbe3, SBE III, OsSBEIIb, SBEIIb,OsSSIVb, SSIV-2, OsSSIV-2, SSIVb, SSIV-2, SSIV2, OsSSIV2,wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx,Bph9, BPH9/26, Bph26(t), BPH26, Bph18(t), BPH18,Gn1a, OsCKX2, CKX2, ckx2, Gn1a/OsCKX2, Os CKX2, CKX2/Gn1a,alk, SSII-3, OsSSIIa, OsSSII-3, SSIIa, SSS2A, OsSSIIaChr6, SS2a,OsSSIIIb. SSIII-1, SSIIIa,apo1(t), apo1, SCM2, SCM2/APO1, OsFbox321, Os_F0393, Pbl6/APO1, Pbl6, OsPbl6,  OsFBX202, FBX202,OsFBH1, OsbHLH112, DLN213, OsDLN213, Gn8.1, OsGn8.1,Ghd2, Ghd7, OsGhd7, OsCCT26, OsCMF8, OsI, Ghd7/Hd4, Hd4, EH7-1/Hd4, Ghd7-0a, EH7-1, EH7/Ghd7, EH7, OsEH7, GLW7.1, OsGLW7.1,Bph6, OsBPH6
51571	35000252	Lan T., Xiong W., Chen X., Mo B., Tang G.	Plant cytoplasmic ribosomal proteins: an update on classification, nomenclature, evolution and resources.	Plant J.	110(1)	292-318	2022		
51572	35332155	Guan Z., Zhang Q., Zhang Z., Zuo J., Chen J., Liu R., Savarin J., Broger L., Cheng P., Wang Q., Pei K., Zhang D., Zou T., Yan J., Yin P., Hothorn M., Liu Z.	Mechanistic insights into the regulation of plant phosphate homeostasis by the rice SPX2 - PHR2 complex.	Nat Commun	13(1)	1581	2022	PHR2,SPX2	OsPHR2, Os-PHR2,OsSPX2
51573	35529952	Chang D., Gao S., Zhou G., Deng S., Jia J., Wang E., Cao W.	The chromosome-level genome assembly of <i>Astragalus sinicus</i> and comparative genomic analyses provide new resources and insights for understanding legume-rhizobial interactions.	Plant Commun	3(2)	100263	2022		
51574	35321646	Chen Z., Wang Y., Huang R., Zhang Z., Huang J., Yu F., Lin Y., Guo Y., Liang K., Zhou Y., Chen F.	Integration of transcriptomic and proteomic analyses reveals several levels of metabolic regulation in the excess starch and early senescent leaf mutant LSES1 in rice.	BMC Plant Biol.	22(1)	137	2022	MT,PFPA3,FLO16,FKII,BMY6,RSUS1,APX3,HBD2,TRE1,TPP3,LTP2,AGPL3,APT2,SGR,RCCR2,ADH1,_,SSI,GAPC,APX1,_	OsMT, OsMEX1, MEX1,OsPFPA3, OsPFP1a3, PFP1a3, PFP-ALPHA, OsPFP-ALPHA,CMDH, OscMDH, cMDH, OsMDH, MDH, OsFLO16, OsMDH10.1, MDH10.1, OsLdh11, Ldh11,OsFKII, OsFK1, FK1, FRK-2, OsFRK-2, FRK2, OsFRK2,OsBMY6, BAM3, OsBAM3,sus1, RSus1(t), SUS1, SS2, OsScS2, RSs2, RSus1, SuSy1, OsSUS1, RSS2, RSus2, OsRSUS1,OsAPx3, OsAPx03, OSAPX3, APx3, mAPX,OsCKI1, CKI, hbd2, CKI1, LTG1, OsCKI1/LTRPK1, LTRPK1, OsLTRPK1, LSES1, OsLSES1,OsTRE, OsTRE1, TRE,OsTPP3, TPS3, OsTPS3,nsLTP2, OsnsLTP2, OsLTP2.3, Ltp2, OsLTP2, RLTP2, OsLtpII.3,OsAGPL3, APL3, OsAPL3, AGPlar, OsAGPL1, AGPL1,OsAPT2, APRT, OsAPRT,sgr(t), sgr, OsSGR, OsSgr, SGR1, OsSGR1,OsRCCR2, OsRCCR1, RCCR1,Adh1, Adh1/2, adh1/adh2, OsADH1,PK, OsPK5, PK5,OsSSI, SSS 1, SSS1, SS1, OsSS1, SSSI, OsSSSI,OsGapC3, OGapC3, OsGAPDH1, GAPDH1, OsGapC1,OsAPX1, APXa, OsAPXa, OsAPx01, OsAPx1, OSAPX1, APx1, cAPX, APX2, cAPXa, OscAPXa,OsCR7, CR7
51575	35270172	Sakran R.M., Ghazy M.I., Rehan M., Alsohim A.S., Mansour E.	Molecular Genetic Diversity and Combining Ability for Some Physiological and Agronomic Traits in Rice under Well-Watered and Water-Deficit Conditions.	Plants (Basel)	11(5)		2022		
51576	35505986	Zhang X., Chang G., Wu Z., Wan J., Yang J., Wang F., Wang F., Yu D., Xu P.	Identification and fine mapping of <i>rtms1-D</i>, a gene responsible for reverse thermosensitive genic male sterility from Diannong S-1X.	Plant Divers	44(2)	213-221	2022		
51577	35465199	Singh R., Saripalli G., Gautam T., Kumar A., Jan I., Batra R., Kumar J., Kumar R., Balyan H.S., Sharma S., Gupta P.K.	Meta-QTLs, ortho-MetaQTLs and candidate genes for grain Fe and Zn contents in wheat (<i>Triticum aestivum</i> L.).	Physiol Mol Biol Plants	28(3)	637-650	2022		
51578	35273240	Renuka N., Barvkar V.T., Ansari Z., Zhao C., Wang C., Zhang Y., Nadaf A.B.	Co-functioning of 2AP precursor amino acids enhances 2-acetyl-1-pyrroline under salt stress in aromatic rice (Oryza sativa L.) cultivars.	Sci Rep	12(1)	3911	2022	OAT,SK2(T)(SCL, FGR),P5CS,ODCB	OsOAT, delta-OAT,sk2(t)(scl, fgr), fgr, scl, BAD2, BADH2, sk2, OsBADH2, Badh2, badh2, Os2AP, BADH-2, OsALDH10A8, ALDH10A8 ,OsP5CS, P5CS1, OsP5CS1, OsALDH18B1, ALDH18B1, OsP5CS-1, P5CS-1,ODCb, OsODC3, ODC3, OsODC1, ODC1
51579	35288814	Abd El-Mageed TA., Abd El-Mageed SA., El-Saadony MT., Abdelaziz S., Abdou N.M.	Plant Growth-Promoting Rhizobacteria Improve Growth, Morph-Physiological Responses, Water Productivity, and Yield of Rice Plants Under Full and Deficit Drip Irrigation.	Rice (N Y)	15(1)	16	2022		
51580	35304326	Wang P., Qi F., Yao H., Xu X., Li W., Meng J., Zhang Q., Xie W., Xing Y.	Fixation of hybrid sterility genes and favorable alleles of key yield-related genes with dominance contribute to the high yield of the Yongyou series of intersubspecific hybrid rice.	J Genet Genomics	49(5)	448-457	2022		
51581	35245823	Wang H., Chu Z., Chang S., Jia S., Pang L., Xi C., Liu J., Zhao H., Wang Y., Han S.	Transcriptomic identification of long noncoding RNAs and their hormone-associated nearby coding genes involved in the differential development of caryopses localized on different branches in rice.	J. Plant Physiol.	271	153663	2022		
51582	35328063	Awad-Allah MMA., Mohamed A.H., El-Bana MA., El-Okkiah SAF., Abdelkader M.F.M., Mahmoud M.H., El-Diasty MZ., Said M.M., Shamseldin S.A.M., Abdein M.A.	Assessment of Genetic Variability and Bran Oil Characters of New Developed Restorer Lines of Rice (<i>Oryza sativa</i> L.).	Genes (Basel)	13(3)		2022		
51583	35249124	Hong W.J., Lee S.K., Kim S.H., Kim Y.J., Moon S., Kim E.J., Silva J., Jung K.H.	Comparative transcriptome analysis of pollen and anther wall reveals novel insights into the regulatory mechanisms underlying anther wall development and its dehiscence in rice.	Plant Cell Rep.	41(5)	1229-1242	2022		
51584	35313821	He W., Zhang X., Lv P., Wang W., Wang J., He Y., Song Z., Cai D.	Full-length transcriptome reconstruction reveals genetic differences in hybrids of Oryza sativa and Oryza punctata with different ploidy and genome compositions.	BMC Plant Biol.	22(1)	131	2022		
51585	35409186	Liao Y., Ali A., Xue Z., Zhou X., Ye W., Guo D., Liao Y., Jiang P., Wu T., Zhang H., Xu P., Chen X., Zhou H., Liu Y., Wang W., Wu X.	Disruption of <i>LLM9428</i>/<i>OsCATC</i> Represses Starch Metabolism and Confers Enhanced Blast Resistance in Rice.	Int J Mol Sci	23(7)		2022	AGPL3,PR1B,NOE1,RSOSPR10,AGPL1,SSIIB,SSI	OsAGPL3, APL3, OsAPL3, AGPlar, OsAGPL1, AGPL1,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1, OsPR1a, PR1a,CATC, OsCat, OsCatC, OsCATC, OsNOE1, noe1, catC, OsCATC, CAT3, OsCAT3, LLM9428, OsLLM9428,RSOsPR10, RsOsPR10a, OsPR10a, OsPR10alpha, OsPR10, PR10, OsBETV1, BETV1,OsAGPL1, OsAPL1, APL1, OsAGPL3, AGPL3, OsAGPSL3, AGPSL3,OsSSIIb, OsSSII-2, SSII-2, SS2, OsSSSIIb, SS2b,OsSSI, SSS 1, SSS1, SS1, OsSS1, SSSI, OsSSSI
51586	35258682	Zhang Y., Dong G., Chen F., Xiong E., Liu H., Jiang Y., Xiong G., Ruan B., Qian Q., Zeng D., Ma D., Yu Y., Wu L.	The kinesin-13 protein BR HYPERSENSITIVE?1 is a negative brassinosteroid signaling component regulating rice growth and development.	Theor. Appl. Genet.	135(5)	1751-1766	2022		
51587	35316694	Li R., Wu L., Shao Y., Hu Q., Zhang H.	Melatonin alleviates copper stress to promote rice seed germination and seedling growth via crosstalk among various defensive response pathways.	Plant Physiol. Biochem.	179	65-77	2022		
51588	35262821	He G., Du Z., Xu Z., Xu H., Xu Q.	Genome sequencing and genetic analysis of recombinant inbred lines reveals important agronomic traits related loci under different nitrogen fertilization.	Mol. Biol. Rep.	49(6)	4545-4553	2022		
51589	35328810	Zeng D., Cui J., Yin Y., Xiong Y., Yu W., Zhao H., Guan S., Cheng D., Sun Y., Lu W.	The Memory of Rice Response to Spaceflight Stress: From the Perspective of Metabolomics and Proteomics.	Int J Mol Sci	23(6)		2022		
51590	35303197	Li P., Chen Y.H., Lu J., Zhang C.Q., Liu Q.Q., Li Q.F.	Genes and Their Molecular Functions Determining Seed Structure, Components, and Quality of Rice.	Rice (N Y)	15(1)	18	2022		
51591	35367286	Li Y., Zhang S., Bao Q., Chu Y., Sun H., Huang Y.	Jasmonic acid alleviates cadmium toxicity through regulating the antioxidant response and enhancing the chelation of cadmium in rice (Oryza sativa L.).	Environ. Pollut.	304	119178	2022		
51592	35336657	Binodh A.K., Thankappan S., Ravichandran A., Mitra D., Alagarsamy S., Panneerselvam P., Senapati A., Sami R., Al-Mushhin AAM., Aljahani A.H., Alyamani A., Alqurashi M.	Synergistic Modulation of Seed Metabolites and Enzymatic Antioxidants Tweaks Moisture Stress Tolerance in Non-Cultivated Traditional Rice Genotypes during Germination.	Plants (Basel)	11(6)		2022		
51593	35271776	Imran M., Khanal S., Zhou X.S., Antony-Babu S., Atiq M.	First Report of Leaf Spot of Rice Caused by <i>Epicoccum sorghinum</i> in the United States.	Plant Dis.			2022		
51594	35276387	Ouyang Y., Li X., Zhang Q.	Understanding the genetic and molecular constitutions of heterosis for developing hybrid rice.	J Genet Genomics	49(5)	385-393	2022		
51595	35312798	Ye C., Ishimaru T., Lambio L., Li L., Long Y., He Z., Htun T.M., Tang S., Su Z.	Marker-assisted pyramiding of QTLs for heat tolerance and escape upgrades heat resilience in rice (Oryza sativa L.).	Theor. Appl. Genet.	135(4)	1345-1354	2022		
51596	35088867	Dai C., Dai X., Qu H., Men Q., Liu J., Yu L., Gu M., Xu G.	The rice phosphate transporter OsPHT1;7 plays a dual role in phosphorus redistribution and anther development.	Plant Physiol.	188(4)	2272-2288	2022		
51597	35406897	Dauda W.P., Shanmugam V., Tyagi A., Solanke A.U., Kumar V., Krishnan S.G., Bashyal B.M., Aggarwal R.	Genome-Wide Identification and Characterisation of Cytokinin-O-Glucosyltransferase (CGT) Genes of Rice Specific to Potential Pathogens.	Plants (Basel)	11(7)		2022		
51598	35286504	Siddikee M.A., Zereen M.I., Wu M., Zhang W., Dai C.C.	Correction to: Phomopsis liquidambaris reduces ethylene biosynthesis in rice under salt stress via increasing the activity of 1-aminocyclopropane-1-carboxylate deaminase.	Arch. Microbiol.	204(4)	211	2022		
51599	35287184	Zhou J., Liu C., Chen Q., Liu L., Niu S., Chen R., Li K., Sun Y., Shi Y., Yang C., Shen S., Li Y., Xing J., Yuan H., Liu X., Fang C., Fernie A.R., Luo J.	Integration of rhythmic metabolome and transcriptome provides insights into the transmission of rhythmic fluctuations and temporal diversity of metabolism in rice.	Sci China Life Sci			2022		
51600	35419814	Tiwari S., Nutan K.K., Deshmukh R., Sarsu F., Gupta K.J., Singh A.K., Singla-Pareek SL., Pareek A.	Seedling-stage salinity tolerance in rice: Decoding the role of transcription factors.	Physiol Plant	174(2)	e13685	2022		
51601	34893906	Feng Y., Tao S., Zhang P., Sperti F.R., Liu G., Cheng X., Zhang T., Yu H., Wang X.E., Chen C., Monchaud D., Zhang W.	Epigenomic features of DNA G-quadruplexes and their roles in regulating rice gene transcription.	Plant Physiol.	188(3)	1632-1648	2022		
51602	35128739	Nagata H., Ono A., Tonosaki K., Kawakatsu T., Sato Y., Yano K., Kishima Y., Kinoshita T.	Temporal changes in transcripts of miniature inverted-repeat transposable elements during rice endosperm development.	Plant J.	109(5)	1035-1047	2022		
51603	35309518	Al-Daej MI.	Genetic studies for grain quality traits and correlation analysis of mineral element contents on Al-Ahsa rice and some different varieties (<i>Oryza Sativa</i> L.).	Saudi J Biol Sci	29(3)	1893-1899	2022		
51604	35134987	Kawai M., Tabata R., Ohashi M., Honda H., Kamiya T., Kojima M., Takebayashi Y., Oishi S., Okamoto S., Hachiya T., Sakakibara H.	Regulation of ammonium acquisition and use in Oryza longistaminata ramets under nitrogen source heterogeneity.	Plant Physiol.	188(4)	2364-2376	2022		
51605	35406866	Yu Y., Deng L., Zhou L., Chen G., Wang Y.	Exogenous Melatonin Activates Antioxidant Systems to Increase the Ability of Rice Seeds to Germinate under High Temperature Conditions.	Plants (Basel)	11(7)		2022		
51606	35574104	Vinarao R., Proud C., Snell P., Fukai S., Mitchell J.	Genomic Regions and Floral Traits Contributing to Low Temperature Tolerance at Young Microspore Stage in a Rice (<i>Oryza sativa</i> L.) Recombinant Inbred Line Population of Sherpa/IRAT109.	Front Plant Sci	13	873677	2022		
51607	35557721	Khurana R., Bhimrajka S., Sivakrishna Rao G., Verma V., Boora N., Gawande G., Kapoor M., Rao K.V., Kapoor S.	Characterization of Transcription Regulatory Domains of OsMADS29: Identification of Proximal Auxin-Responsive Domains and a Strong Distal Negative Element.	Front Plant Sci	13	850956	2022		
51608	35449414	Song X., Meng X., Guo H., Cheng Q., Jing Y., Chen M., Liu G., Wang B., Wang Y., Li J., Yu H.	Targeting a gene regulatory element enhances rice grain yield by decoupling panicle number and size.	Nat. Biotechnol.			2022		
51609	35396526	Wang Q., Li X., Chen H., Wang F., Li Z., Zuo J., Fan M., Luo B., Feng P., Wang J.	Mapping combined with principal component analysis identifies excellent lines with increased rice quality.	Sci Rep	12(1)	5969	2022		
51610	35438319	Fujita N., Miura S., Crofts N.	Effects of Various Allelic Combinations of Starch Biosynthetic Genes on the Properties of Endosperm Starch in Rice.	Rice (N Y)	15(1)	24	2022		
51611	35490638	Pan T., Wang L., Peng Z., Tian J., Cai K.	Silicon enhances the submergence tolerance of rice by regulating quiescence strategy and alleviating oxidative damage.	Plant Physiol. Biochem.	182	124-132	2022		
51612	35448790	Zhou H., Wang Y., Zhang Y., Xiao Y., Liu X., Deng H., Lu X., Tang W., Zhang G.	Comparative Analysis of Heat-Tolerant and Heat-Susceptible Rice Highlights the Role of <i>OsNCED1</i> Gene in Heat Stress Tolerance.	Plants (Basel)	11(8)		2022		
51613	35498644	Hu Z.J., Huang Y.Y., Lin X.Y., Feng H., Zhou S.X., Xie Y., Liu X.X., Liu C., Zhao R.M., Zhao W.S., Feng C.H., Pu M., Ji Y.P., Hu X.H., Li G.B., Zhao J.H., Zhao Z.X., Wang H., Zhang J.W., Fan J., Li Y., Peng Y.L., He M., Li D.Q., Huang F., Peng Y.L., Wang W.M.	Loss and Natural Variations of Blast Fungal Avirulence Genes Breakdown Rice Resistance Genes in the Sichuan Basin of China.	Front Plant Sci	13	788876	2022		
51614	35567151	Debsharma S.K., Rahman M.A., Quddus M.R., Khatun H., Disha R.F., Roy P.R., Ahmed S., El-Sharnouby M., Iftekharuddaula K.M., Aloufi S., Alzuaibr F.M., Alqurashi M., Sakran M.I., Kabir M.S.	SNP Based Trait Characterization Detects Genetically Important and Stable Multiple Stress Tolerance Rice Genotypes in Salt-Stress Environments.	Plants (Basel)	11(9)		2022		
51615	35490999	Rai P., Pratap Singh V., Sharma S., Tripathi D.K., Sharma S.	Iron oxide nanoparticles impart cross tolerance to arsenate stress in rice roots through involvement of nitric oxide.	Environ. Pollut.	307	119320	2022		
51616	35445538	Pa V., Vijayaraghavareddy P., Uttarkar A., Dawane A., D S., V A., Kc B., Niranjan V., Ms S., Cv A., Makarla U., Vemanna R.S.	Novel small molecules targeting bZIP23 TF improve stomatal conductance and photosynthesis under mild drought stress by regulating ABA.	FEBS J.			2022		
51617	35490237	Yang X., Liu C., Niu X., Wang L., Li L., Yuan Q., Pei X.	Research on lncRNA related to drought resistance of Shanlan upland rice.	BMC Genomics	23(1)	336	2022		
51618	35498658	Qian L., Song F., Xia J., Wang R.	A Glucuronic Acid-Producing Endophyte <i>Pseudomonas</i> sp. MCS15 Reduces Cadmium Uptake in Rice by Inhibition of Ethylene Biosynthesis.	Front Plant Sci	13	876545	2022		
51619	35447797	Liang X., Chen L., Lan X., Liao G., Feng L., Li J., Fan W., Wang S., Liu J.	Physiological and Population Responses of <i>Nilaparvata lugens</i> after Feeding on Drought-Stressed Rice.	Insects	13(4)		2022		
51620	35490639	Zhu C.Q., Wei Q., Hu W.J., Kong Y.L., Xiang X.J., Zhang H., Cao X.C., Zhu L.F., Liu J., Tian W.H., Jin Q.Y., Zhang J.H.	Unearthing the alleviatory mechanisms of hydrogen sulfide in aluminum toxicity in rice.	Plant Physiol. Biochem.	182	133-144	2022		
51621	35567185	Alam M.S., Kong J., Tao R., Ahmed T., Alamin M., Alotaibi S.S., Abdelsalam N.R., Xu J.H.	CRISPR/Cas9 Mediated Knockout of the <i>OsbHLH024</i> Transcription Factor Improves Salt Stress Resistance in Rice (<i>Oryza sativa</i> L.).	Plants (Basel)	11(9)		2022		
51622	35696904	Ranjan R., Malik N., Sharma S., Agarwal P., Kapoor S., Tyagi A.K.	OsCPK29 interacts with MADS68 to regulate pollen development in rice.	Plant Sci.	321	111297	2022		
51623	35548297	Li R., Li Z., Ye J., Yang Y., Ye J., Xu S., Liu J., Yuan X., Wang Y., Zhang M., Yu H., Xu Q., Wang S., Yang Y., Wang S., Wei X., Feng Y.	Identification of <i>SMG3</i>, a QTL Coordinately Controls grain size, grain number per Panicle, and grain weight in Rice.	Front Plant Sci	13	880919	2022	GL1D,PIS1,CDC2-2	OsMyb3, OSMYB3, MYB3, OsGL1D, OsMYB46, MYB46, Kala3, OsKala3, SMG3, OsSMG3, Os2R_MYB39, 2R_MYB39,Orysa;Rb2, RBR2, OsRBR1, RBR1, OsPIS1, RB2, OsRB2, RB1, OsRB1,cdc2Os-2, CDC2Os-2, CDKA-2, CDKA;2, Orysa;CDKA;2, Rcdc2-2, OsCDKA;2, OsCDKA2, CDKA2, CDKA;1, OsCDKA;1, CDC20S-2, OsCDC20S-2
51624	35645994	Khan I., Muhammad A., Chattha M.U., Skalicky M., Bilal Chattha M., Ahsin Ayub M., Rizwan Anwar M., Soufan W., Hassan M.U., Rahman M.A., Brestic M., Zivcak M., El Sabagh A.	Mitigation of Salinity-Induced Oxidative Damage, Growth, and Yield Reduction in Fine Rice by Sugarcane Press Mud Application.	Front Plant Sci	13	840900	2022		
51625	35548298	Liu R., Zhang R., Yang Y., Liu X., Gong Q.	Monitoring Autophagy in Rice With GFP-ATG8 Marker Lines.	Front Plant Sci	13	866367	2022		
51626	35548287	Long W., Luo L., Luo L., Xu W., Li Y., Cai Y., Xie H.	Whole Genome Resequencing of 20 Accessions of Rice Landraces Reveals Javanica Genomic Structure Variation and Allelic Genotypes of a Grain Weight Gene TGW2.	Front Plant Sci	13	857435	2022		
51627	35397672	Banakar S.N., PrasannaKumar MK., Mahesh H.B., Parivallal P.B., Puneeth M.E., Gautam C., Pramesh D., Shiva Kumara TN., Girish T.R., Nori S., Narayan S.S.	Red-seaweed biostimulants differentially alleviate the impact of fungicidal stress in rice (Oryza sativa L.).	Sci Rep	12(1)	5993	2022		
51628	35453455	Sahoo R.K., Tuteja R., Gill R., Jim?nez Bremont JF., Gill S.S., Tuteja N.	Marker-Free Rice (<i>Oryza sativa</i> L. cv. IR 64) Overexpressing <i>PDH45</i> Gene Confers Salinity Tolerance by Maintaining Photosynthesis and Antioxidant Machinery.	Antioxidants (Basel)	11(4)		2022		
51629	35569169	Liu S., Liu W., Lai J., Liu Q., Zhang W., Chen Z., Gao J., Song S., Liu J., Xiao Y.	OsGLYI3, a glyoxalase gene expressed in rice seed, contributes to seed longevity and salt stress tolerance.	Plant Physiol. Biochem.	183	85-95	2022		
51630	35084463	Tao Y., Huang J., Jing H.K., Shen R.F., Zhu X.F.	Jasmonic acid is involved in root cell wall phosphorus remobilization through the nitric oxide dependent pathway in rice.	J. Exp. Bot.	73(8)	2618-2630	2022		
51631	35365089	Zhang Y., Chen Q., Zhu G., Zhang D., Liang W.	Chromatin-remodeling factor CHR721 with non-canonical PIP-box interacts with OsPCNA in Rice.	BMC Plant Biol.	22(1)	164	2022		
51632	35500783	Zhang Z., Zhao J., Tappiban P., Ying Y., Hu Y., Xu F., Bao J.	Diurnal changes in starch molecular structures and expression profiles of starch biosynthesis enzymes in rice developing seeds.	Int. J. Biol. Macromol.	209(Pt B)	2165-2174	2022		
51633	35312080	Wang Q., Li Y., Kosami K.I., Liu C., Li J., Zhang D., Miki D., Kawano Y.	Three highly conserved hydrophobic residues in the predicted alpha2-helix of rice NLR protein Pit contribute to its localization and immune induction.	Plant Cell Environ.	45(6)	1876-1890	2022		
51634	35576158	Cui D., Zhou H., Ma X., Lin Z., Sun L., Han B., Li M., Sun J., Liu J., Jin G., Wang X., Cao G., Deng X.W., He H., Han L.	Genomic insights on the contribution of introgressions from Xian/Indica to the genetic improvement of Geng/Japonica rice cultivars.	Plant Commun	3(3)	100325	2022	WFP,SMG1,PID2,DEP3,PIB	OsSPL14, SPL14, IPA1, WFP/IPA1, OsSPL14/WFP/IPA1, OsIPA1,  IPA1/OsSPL14,OsMKK4, MKK4, OsMKK4/SMG1, OsMAPKK4, MAPKK4, OsMEK4, MEK4, OsSMG1, SMG1/OsMEK6, OsMEK6, MEK6, OsSTS, STS,Pi-d2, Pi-d(t)2, PiD2(t), Pid2, PI-D2, Pi-d2(t), SDRLK-PID2, OsSDRLK-PID2,dep3, OspPLAIIIdelta, pPLAIIIdelta,Pi b(Pi s), Pis, Pib, Pi-s, Pi-hy
51635	35476244	Zhang R., Chen S., Meng X., Chai Z., Wang D., Yuan Y., Chen K., Jiang L., Li J., Gao C.	Erratum to: Generating broad-spectrum tolerance to ALS-inhibiting herbicides in rice by base editing.	Sci China Life Sci	65(6)	1270	2022		
51636	35343596	Chen S., Sun B., Shi Z., Miao X., Li H.	Identification of the rice genes and metabolites involved in dual resistance against brown planthopper and rice blast fungus.	Plant Cell Environ.	45(6)	1914-1929	2022		
51637	35463416	Guo M., Zhang W., Mohammadi M.A., He Z., She Z., Yan M., Shi C., Lin L., Wang A., Liu J., Tian D., Zhao H., Qin Y.	<i>OsDDM1b</i> Controls grain size.by Influencing Cell Cycling and Regulating Homeostasis and Signaling of Brassinosteroid in Rice.	Front Plant Sci	13	873993	2022		
51638	35453461	Jiang Y., Huang S., Ma L., Kong L., Pan S., Tang X., Tian H., Duan M., Mo Z.	Effect of Exogenous Melatonin Application on the grain yield and Antioxidant Capacity in Aromatic Rice under Combined Lead-Cadmium Stress.	Antioxidants (Basel)	11(4)		2022		
51639	35406969	Chaiwong N., Pusadee T., Jamjod S., Prom-U-Thai C.	Silicon Application Promotes Productivity, Silicon Accumulation and Upregulates Silicon Transporter Gene Expression in Rice.	Plants (Basel)	11(7)		2022		
51640	35528941	Wang X., Liu H., Zhang D., Zou D., Wang J., Zheng H., Jia Y., Qu Z., Sun B., Zhao H.	Photosynthetic Carbon Fixation and Sucrose Metabolism Supplemented by Weighted Gene Co-expression Network Analysis in Response to Water Stress in Rice With Overlapping Growth Stages.	Front Plant Sci	13	864605	2022		
51641	35414717	Nett R.S., Bender K.S., Peters R.J.	Production of the plant hormone gibberellin by rhizobia increases host legume nodule size.	ISME J	16(7)	1809-1817	2022		
51642	35574085	Guo J., Li Y., Xiong L., Yan T., Zou J., Dai Z., Tang G., Sun K., Luan X., Yang W., Tan Q., Zhu H., Zeng R., Wang S., Zhang G.	Development of Wide-Compatible <i>Indica</i> Lines by Pyramiding Multiple Neutral Alleles of <i>Indica</i>-<i>Japonica</i> hybrid sterility Loci.	Front Plant Sci	13	890568	2022		
51643	35563070	Wu Y.P., Chang Y.C., Kuo H.I., Lin B.N., Wang S.M., Tseng Y.C.	The Development of Two High-Yield and High-Quality Functional Rice Cultivars Using Marker-Assisted Selection and Conventional Breeding Methods.	Int J Mol Sci	23(9)		2022		
51644	35388561	Cho L.H., Yoon J., Tun W., Baek G., Peng X., Hong W.J., Mori I.C., Hojo Y., Matsuura T., Kim S.R., Kim S.T., Kwon S.W., Jung K.H., Jeon J.S., An G.	Cytokinin increases vegetative growth period by suppressing florigen expression in rice and maize.	Plant J.	110(6)	1619-1635	2022		
51645	35456901	Zhang Q., Li T., Gao M., Ye M., Lin M., Wu D., Guo J., Guan W., Wang J., Yang K., Zhu L., Cheng Y., Du B., He G.	Transcriptome and Metabolome Profiling Reveal the Resistance Mechanisms of Rice against Brown Planthopper.	Int J Mol Sci	23(8)		2022		
51646	35134146	Suganami M., Konno S., Maruhashi R., Takagi D., Tazoe Y., Wada S., Yamamoto H., Shikanai T., Ishida H., Suzuki Y., Makino A.	Expression of flavodiiron protein rescues defects in electron transport around PSI resulting from overproduction of Rubisco activase in rice.	J. Exp. Bot.	73(8)	2589-2600	2022		
51647	35434473	Ochiai K., Oba K., Oda K., Miyamoto T., Matoh T.	Effects of improved sodium uptake ability on grain yields of rice plants under low potassium supply.	Plant Direct	6(4)	e387	2022		
51648	35484202	Tal L., Palayam M., Ron M., Young A., Britt A., Shabek N.	A conformational switch in the SCF-D3/MAX2 ubiquitin ligase facilitates strigolactone signalling.	Nat Plants	8(5)	561-573	2022		
51649	35562952	Mei Q., Fu Y.W., Li T.M., Xuan Y.H.	<i>Ac/Ds</i>-Induced Receptor-like Kinase Genes Deletion Provides Broad-Spectrum Resistance to Bacterial Blight in Rice.	Int J Mol Sci	23(9)		2022	RLK19,8TAK1,RBOHB,PR10A,RLK22,8TAK2,PR1A	OsRLK19,Os8Tak1, OsRLK21, RLK21,rbohB, OsrbohB, Os rbohB, OsRbohB, OsNox1, Nox1, Os-RbohB, RbohB, OsRboh1, Rboh1,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsRLK22,Os8Tak2, YK21, OsRLCK12, RLCK12, RLK20, OsRLK20,OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1, OsPR1b, PR1alpha, OsPR1alpha
51650	35413311	Sun L., Cheng L., Ma Y., Lei P., Wang R., Gu Y., Li S., Zhang F., Xu H.	Exopolysaccharides from Pantoea alhagi NX-11 specifically improve its root colonization and rice salt resistance.	Int. J. Biol. Macromol.	209(Pt A)	396-404	2022		
51651	35557725	Wang X., Li J., Sun J., Gu S., Wang J., Su C., Li Y., Ma D., Zhao M., Chen W.	Mining Beneficial Genes for salt tolerance From a Core Collection of Rice Landraces at the Seedling Stage Through Genome-Wide Association Mapping.	Front Plant Sci	13	847863	2022		
51652	35521542	Mishra B., Kumar N., Shahid Mukhtar M.	A rice protein interaction network reveals high centrality nodes and candidate pathogen effector targets.	Comput Struct Biotechnol J	20	2001-2012	2022		
51653	35574117	Sun T., Wang T., Qiang Y., Zhao G., Yang J., Zhong H., Peng X., Yang J., Li Y.	CBL-interacting protein kinase OsCIPK18 Regulates the Response of Ammonium Toxicity in Rice Roots.	Front Plant Sci	13	863283	2022		
51654	35463411	Mei S., Zhang G., Jiang J., Lu J., Zhang F.	Combining Genome-Wide Association Study and Gene-Based Haplotype Analysis to Identify Candidate Genes for Alkali Tolerance at the Germination Stage in Rice.	Front Plant Sci	13	887239	2022		
51655	35460590	Desmedt W., Kudjordjie E.N., Chavan S.N., Zhang J., Li R., Yang B., Nicolaisen M., Mori M., Peters R.J., Vanholme B., Vesterg?rd M., Kyndt T.	Rice diterpenoid phytoalexins are involved in defence against parasitic nematodes and shape rhizosphere nematode communities.	New Phytol.	235(3)	1231-1245	2022		
51656	35397732	Shin N.H., Han J.H., Vo K.T.X., Seo J., Navea I.P., Yoo S.C., Jeon J.S., Chin J.H.	Development of a Temperate Climate-Adapted indica Multi-stress Tolerant Rice Variety by Pyramiding Quantitative Trait Loci.	Rice (N Y)	15(1)	22	2022		
51657	35563058	Li Z., Umar Khan M., Yan X., Mu D., Xie Y., Waqas M., Wu X., Letuma P., Fang C., Lin W.	Deciphering the Molecular Mechanisms of Chilling Tolerance in <i>Lsi1</i>-Overexpressing Rice.	Int J Mol Sci	23(9)		2022		
51658	35462224	Li S., Zha W., Liu K., Li C., Zhou L., He G., Xu H., Li P., Chen J., Chen Z., You A.	Molecular identification and efficacy assessment of a glufosinate-tolerant and brown planthopper-resistant transgenic rice line.	J. Plant Physiol.	273	153688	2022		
51659	35293046	Li L., Mao D., Sun L., Wang R., Tan L., Zhu Y., Huang H., Peng C., Zhao Y., Wang J., Huang D., Chen C.	CF1 reduces grain-cadmium levels in rice (Oryza sativa).	Plant J.	110(5)	1305-1318	2022		
51660	35448812	Saha I., Ghosh A., Dolui D., Fujita M., Hasanuzzaman M., Adak M.K.	Differential Impact of Nitric Oxide and Abscisic Acid on the Cellular and Physiological Functioning of <i>sub1A</i> QTL Bearing Rice Genotype under Salt Stress.	Plants (Basel)	11(8)		2022		
51661	35500526	Ren Y., Zhu Y., Liang F., Li Q., Zhao Q., He Y., Lin X., Qin X., Cheng S.	Effect of foliar copper application on grain yield, 2-acetyl-1-Pyrroline and copper content in fragrant rice.	Plant Physiol. Biochem.	182	154-166	2022		
51662	35454720	Fang S., Chen C., Yao Y., Nsor-Atindana J., Liu F., Chen M., Zhong F.	Study on the Pasting Properties of Indica and Japonica Waxy Rice.	Foods	11(8)		2022		
51663	35592483	Yadav C., Bahuguna R.N., Dhankher O.P., Singla-Pareek SL., Pareek A.	Physiological and molecular signatures reveal differential response of rice genotypes to drought and drought combination with heat and salinity stress.	Physiol Mol Biol Plants	28(4)	899-910	2022		
51664	35393838	Zhang Y.H., Liu Y.M., Wang C.R., Liu Y.P., Pang J., Huang Y.C., Liu Z.Q., Zhang C.B.	[Effects of <i>Burkholderia</i> sp. Y4 on Cadmium Damage and Uptake in Rice Seedlings].	Huan Jing Ke Xue	43(4)	2142-2150	2022		
51665	35557720	Zhang B., Ma L., Wu B., Xing Y., Qiu X.	Introgression Lines: Valuable Resources for Functional Genomics Research and Breeding in Rice (<i>Oryza sativa</i> L.).	Front Plant Sci	13	863789	2022		
51666	35365095	Zeng Z., Zhang S., Li W., Chen B., Li W.	Gene-coexpression network analysis identifies specific modules and hub genes related to cold stress in rice.	BMC Genomics	23(1)	251	2022		
51667	35428329	Zhang J., Feng X., Wu Q., Yang G., Tao M., Yang Y., He Y.	Rice bacterial blight resistant cultivar selection based on visible/near-infrared spectrum and deep learning.	Plant Methods	18(1)	49	2022		
51668	35625412	Klees S., Heinrich F., Schmitt A.O., G?ltas M.	agReg-SNPdb-Plants: A Database of Regulatory SNPs for Agricultural Plant Species.	Biology (Basel)	11(5)		2022		
51669	35366102	Sukegawa S., Toki S., Saika H.	Genome Editing Technology and Its Application to Metabolic Engineering in Rice.	Rice (N Y)	15(1)	21	2022		
51670	35563255	Jiang Z., Chen Q., Chen L., Liu D., Yang H., Xu C., Hong J., Li J., Ding Y., Sakr S., Liu Z., Jiang Y., Li G.	Sink Strength Promoting Remobilization of Non-Structural Carbohydrates by Activating Sugar Signaling in Rice Stem during Grain Filling.	Int J Mol Sci	23(9)		2022		
51671	35409377	Hao Z., Ma S., Liang L., Feng T., Xiong M., Lian S., Zhu J., Chen Y., Meng L., Li M.	Candidate Genes and Pathways in Rice Co-Responding to Drought and Salt Identified by gcHap Network.	Int J Mol Sci	23(7)		2022		
51672	35548314	Wei C., Liu H., Wang W., Luo P., Chen Q., Li R., Wang C., Botella J.R., Zhang H.	Expanding the Editing Window of Cytidine Base Editors With the Rad51 DNA-Binding Domain in Rice.	Front Plant Sci	13	865848	2022		
51673	35179195	Han B., Cui D., Ma X., Cao G., Zhang H., Koh H.J., Han L.	Evidence for evolution and selection of drought-resistant genes based on high-throughput resequencing in weedy rice.	J. Exp. Bot.	73(7)	1949-1962	2022		
51674	35457271	Zegeye W.A., Tsegaw M., Zhang Y., Cao L.	CRISPR-Based Genome Editing: Advancements and Opportunities for Rice Improvement.	Int J Mol Sci	23(8)		2022		
51675	35627119	Ding G., Hu B., Zhou Y., Yang W., Zhao M., Xie J., Zhang F.	Development and Characterization of Chromosome Segment Substitution Lines Derived from <i>Oryza rufipogon</i> in the Background of the <i>Oryza sativa</i>&nbsp;<i>indica</i> Restorer Line R974.	Genes (Basel)	13(5)		2022		
51676	35567105	Cheah B.H., Chuang W.P., Lo J.C., Li Y., Cheng C.Y., Yang Z.W., Liao C.T., Lin Y.F.	Exogenous Copper Application for the Elemental Defense of Rice Plants against Rice Leaffolder (<i>Cnaphalocrocis medinalis</i>).	Plants (Basel)	11(9)		2022		
51677	35384231	Singh S.K., Husain T., Suhel M., Prasad S.M., Singh V.P.	Hydrogen sulphide ameliorates hexavalent chromium toxicity in two cereal crops: Role of antioxidant enzymes and proline metabolism.	Plant Biol (Stuttg)	24(4)	636-641	2022		
51678	35878974	Welsch R., Li L.	Golden Rice-Lessons learned for inspiring future metabolic engineering strategies and synthetic biology solutions.	Meth. Enzymol.	671	1-29	2022		
51679	35460933	Zhang Q., Feng Y.X., Lin Y.J., Yu X.Z.	Mathematical quantification of interactive complexity of transcription factors involved in proline-mediated regulative strategies in Oryza sativa under chromium stress.	Plant Physiol. Biochem.	182	36-44	2022		
51680	35395133	Dai S., Georgelis N., Bedair M., Hong Y.J., Qi Q., Larue C.T., Sitoula B., Huang W., Krebel B., Shepard M., Su W., Kretzmer K., Dong J., Slewinski T., Berger S., Ellis C., Jerga A., Varagona M.	Ectopic expression of a rice triketone dioxygenase gene confers mesotrione tolerance in soybean.	Pest Manag. Sci.	78(7)	2816-2827	2022		
51681	35463392	Li W., Zhang S., Huang G., Huang L., Zhang J., Li Z., Hu F.	A Genetic Network Underlying Rhizome Development in <i>Oryza longistaminata</i>.	Front Plant Sci	13	866165	2022		
51682	35574109	Darwell C.T., Wanchana S., Ruanjaichon V., Siangliw M., Thunnom B., Aesomnuk W., Toojinda T.	riceExplorer: Uncovering the Hidden Potential of a National Genomic Resource Against a Global Database.	Front Plant Sci	13	781153	2022		
51683	35624702	Tyagi A., Lim M.J., Kim N.H., Barathikannan K., Vijayalakshmi S., Elahi F., Ham H.J., Oh D.H.	Quantification of Amino Acids, Phenolic Compounds Profiling from Nine Rice Varieties and Their Antioxidant Potential.	Antioxidants (Basel)	11(5)		2022		
51684	35373828	?lvarez C., Brenes-?lvarez M., Molina-Heredia FP., Mariscal V.	Quantitative Proteomics at Early Stages of the Symbiotic Interaction Between Oryza sativa and Nostoc punctiforme Reveals Novel Proteins Involved in the Symbiotic Crosstalk.	Plant Cell Physiol.			2022		
51685	35548286	Kanu A.S., Ashraf U., Mansaray L.R., Abbas F., Fiaz S., Amanullah S., Charley C.S., Tang X.	Exogenous Methyl Jasmonate Application Improved Physio-Biochemical Attributes, Yield, Quality, and Cadmium Tolerance in Fragrant Rice.	Front Plant Sci	13	849477	2022		
51686	35418344	Wang M., Zhu X., Peng G., Liu M., Zhang S., Chen M., Liao S., Wei X., Xu P., Tan X., Li F., Li Z., Deng L., Luo Z., Zhu L., Zhao S., Jiang D., Li J., Liu Z., Xie X., Wang S., Wu A., Zhuang C., Zhou H.	Methylesterification of cell-wall pectin controls the diurnal flower-opening times in rice.	Mol Plant	15(6)	956-972	2022	DFOT1	OsDFOT1
51687	35567135	Hu H., Gao R., He L., Liang F., Li Z., Xu J., Yang L., Wang C., Liu Z., Xu J., Qiu X.	Genetic Dissection of Rice ratooning ability Using an Introgression Line Population and Substitution Mapping of a Pleiotropic Quantitative Trait Locus <i>qRA5</i>.	Plants (Basel)	11(9)		2022		
51688	35453023	Wang K., Yu H., Zhang X., Ye D., Huang H., Wang Y., Zheng Z., Li T.	Hydrogen peroxide contributes to cadmium binding on root cell wall pectin of cadmium-safe rice line (Oryza sativa L.).	Ecotoxicol. Environ. Saf.	237	113526	2022		
51689	35563126	Maeda S., Sasaki K., Kaku H., Kanda Y., Ohtsubo N., Mori M.	Overexpression of Rice <i>BSR2</i> Confers disease resistance and Induces Enlarged Flowers in <i>Torenia fournieri</i> Lind.	Int J Mol Sci	23(9)		2022	BSR2	OsBSR2, CYP78A15, OsCYP78A15
51690	35531209	Abd El-Aty MS., Abo-Youssef MI., Galal A.A., Salama A.M., Salama A.A., El-Shehawi AM., Elseehy M.M., El-Saadony MT., El-Tahan AM.	Genetic behavior of earliness and yield traits of some rice (<i>Oryza sativa</i> L.) genotypes.	Saudi J Biol Sci	29(4)	2691-2697	2022		
51691	35394666	Chen S., Cao H., Huang B., Zheng X., Liang K., Wang G.L., Sun X.	The WRKY10-VQ8 module safely and effectively regulates rice thermotolerance.	Plant Cell Environ.	45(7)	2126-2144	2022		
51692	35684163	Chen Y., Shahid M.Q., Wu J., Deng R., Chen Z., Wang L., Liu G., Zhou H., Liu X.	Thermo-Sensitive Genic Male Sterile Lines of Neo-Tetraploid Rice Developed through Gene Editing Technology Revealed High Levels of Hybrid Vigor.	Plants (Basel)	11(11)		2022		
51693	35635977	Xiao Y., Ren J., Wang Y., Chen X., Zhou S., Li M., Gao F., Liang L., Wang D., Ren G., Wang L.	De novo profiling of insect-resistant proteins of rice via nanopore peptide differentiation.	Biosens Bioelectron	212	114415	2022		
51694	35630784	Provost Z., Hansen E.O., Lynds M.V., Flinn B.S., Minic Z., Berezovski M.V., Altosaar I.	Three Diverse Granule Preparation Methods for Proteomic Analysis of Mature Rice (<i>Oryza sativa</i> L.) Starch Grain.	Molecules	27(10)		2022		
51695	35627248	Zhang C., Nie X., Kong W., Deng X., Sun T., Liu X., Li Y.	Genome-Wide Identification and Evolution Analysis of the Gibberellin Oxidase Gene Family in Six Gramineae Crops.	Genes (Basel)	13(5)		2022		
51696	35576152	Yan H., Haak D.C., Li S., Huang L., Bombarely A.	Exploring transposable element-based markers to identify allelic variations underlying agronomic traits in rice.	Plant Commun	3(3)	100270	2022		
51697	35615130	Kandil E.E., El-Banna AAA., Tabl D.M.M., Mackled M.I., Ghareeb R.Y., Al-Huqail AA., Ali H.M., Jebril J., Abdelsalam N.R.	Zinc Nutrition Responses to Agronomic and Yield Traits, Kernel Quality, and pollen Viability in Rice (<i>Oryza sativa</i> L.).	Front Plant Sci	13	791066	2022		
51698	35635654	Suzuki Y., Konno Y., Takegahara-Tamakawa Y., Miyake C., Makino A.	Effects of suppression of chloroplast phosphoglycerate kinase on photosynthesis in rice.	Photosyn. Res.			2022		
51699	35651763	Wang B., Wang S., Tang Y., Jiang L., He W., Lin Q., Yu F., Wang L.	Transcriptome-Wide Characterization of Seed Aging in Rice: Identification of Specific Long-Lived mRNAs for seed longevity.	Front Plant Sci	13	857390	2022		
51700	35706449	Srikakulam N., Guria A., Karanthamalai J., Murugesan V., Krishnan V., Sundaramoorthy K., Saha S., Singh R., Victorathisayam T., Rajapriya V., Sridevi G., Pandi G.	An Insight Into Pentatricopeptide-Mediated Chloroplast Necrosis <i>via</i> microRNA395a During <i>Rhizoctonia solani</i> Infection.	Front Genet	13	869465	2022		
51701	35587614	Chavan S.N., De Kesel J., Desmedt W., Degroote E., Singh R.R., Nguyen G.T., Demeestere K., De Meyer T., Kyndt T.	Dehydroascorbate induces plant resistance in rice against root-knot nematode Meloidogyne graminicola.	Mol. Plant Pathol.	23(9)	1303-1319	2022		
51702	35684234	Amanat M.A., Naeem M.K., Algwaiz H.I.M., Uzair M., Attia K.A., AlKathani M.D.F., Zaid I.U., Zafar S.A., Inam S., Fiaz S., Arif M.H., Ahmad D., Zahra N., Saleem B., Khan M.R.	Evaluation of Green Super Rice Lines for Agronomic and Physiological Traits under Salinity Stress.	Plants (Basel)	11(11)		2022		
51703	35511909	Dash B., Bhuyan S.S., Singh S.K., Chandravani M., Swain N., Rout P., Katara J.L., C P., B N D., Samantaray S.	Androgenesis in indica rice: A comparative competency in development of doubled haploids.	PLoS ONE	17(5)	e0267442	2022		
51704	35684189	Elshayb O.M., Nada A.M., Sadek A.H., Ismail S.H., Shami A., Alharbi B.M., Alhammad B.A., Seleiman M.F.	The Integrative Effects of Biochar and ZnO Nanoparticles for Enhancing Rice Productivity and Water Use Efficiency under Irrigation Deficit Conditions.	Plants (Basel)	11(11)		2022		
51705	35684174	Rizwan M., Usman K., Alsafran M., Jabri H.A., Samreen T., Saleem M.H., Tu S.	Nickel Toxicity Interferes with NO3-/NH4+ Uptake and Nitrogen Metabolic enzyme activity in Rice (<i>Oryza sativa</i> L.).	Plants (Basel)	11(11)		2022		
51706	35712577	Thummala S.R., Guttikonda H., Tiwari S., Ramanan R., Baisakh N., Neelamraju S., Mangrauthia S.K.	Whole-Genome Sequencing of KMR3 and <i>Oryza rufipogon</i>-Derived Introgression Line IL50-13 (Chinsurah Nona 2/Gosaba 6) Identifies Candidate Genes for High Yield and Salinity Tolerance in Rice.	Front Plant Sci	13	810373	2022		
51707	35620460	Parida A.K., Sekhar S., Panda B.B., Sahu G., Shaw B.P.	Effect of Panicle Morphology on Grain Filling and Rice Yield: Genetic Control and Molecular Regulation.	Front Genet	13	876198	2022		
51708	35722518	Singh G., Gopala Krishnan S., Kumar A., Vinod K.K., Bollinedi H., Ellur R.K., Nagarajan M., Bhowmick P.K., Madhav S.M., Singh K., Singh A.K.	Molecular profiling of <i>BADH2</i> locus reveals distinct functional allelic polymorphism associated with fragrance variation in Indian aromatic rice germplasm.	Physiol Mol Biol Plants	28(5)	1013-1027	2022		
51709	35508973	Jiang C., Rashid M.A.R., Zhang Y., Zhao Y., Pan Y.	Genome wide association study on development and evolution of glutinous rice.	BMC Genom Data	23(1)	33	2022		
51710	35631736	He W., Zhong Q., He B., Wu B., Mohi Ud Din A., Han J., Ding Y., Liu Z., Li W., Jiang Y., Li G.	N-Acetylcysteine Priming Alleviates the Transplanting Injury of Machine-Transplanted Rice by Comprehensively Promoting Antioxidant and Photosynthetic Systems.	Plants (Basel)	11(10)		2022		
51711	35504035	Brunetti S.C., Arseneault M.K.M., Gulick P.J.	Characterization and expression of the <i>Pirin</i> gene family in <i>Triticum aestivum</i>.	Genome	65(6)	349-362	2022		
51712	35627215	Huang P., Gu Q., Hu Y., Li H., Wu Z., Liu W., Zhu Z., Yuan P., Duan L., Zhou Y., Luo H., Kou S., Liu L.	Genetic Analysis of a Collection of Rice Germplasm (<i>Oryza sativa</i> L.) through High-Density SNP Array Provides Useful Information for Further Breeding Practices.	Genes (Basel)	13(5)		2022		
51713	35577789	Ichimaru K., Yamaguchi K., Harada K., Nishio Y., Hori M., Ishikawa K., Inoue H., Shigeta S., Inoue K., Shimada K., Yoshimura S., Takeda T., Yamashita E., Fujiwara T., Nakagawa A., Kojima C., Kawasaki T.	Cooperative regulation of PBI1 and MAPKs controls WRKY45 transcription factor in rice immunity.	Nat Commun	13(1)	2397	2022		
51714	35684228	Prasertthai P., Paethaisong W., Theerakulpisut P., Dongsansuk A.	High Temperature Alters Leaf Lipid Membrane Composition Associated with Photochemistry of <i>PSII</i> and Membrane Thermostability in Rice Seedlings.	Plants (Basel)	11(11)		2022		
51715	35586211	Hu P., Tan Y., Wen Y., Fang Y., Wang Y., Wu H., Wang J., Wu K., Chai B., Zhu L., Zhang G., Gao Z., Ren D., Zeng D., Shen L., Xue D., Qian Q., Hu J.	<i>LMPA</i> Regulates lesion mimic Leaf and Panicle Development Through ROS-Induced PCD in Rice.	Front Plant Sci	13	875038	2022	NOE1,VPE2,REP2,CATB,LMPA,CATA	CATC, OsCat, OsCatC, OsCATC, OsNOE1, noe1, catC, OsCATC, CAT3, OsCAT3, LLM9428, OsLLM9428,OsVPE2, OsaLeg1, OsLeg1, Leg1,OsVPE3, VPE3, OsREP-2, REP-2alpha, REP-2beta, OsaLeg2, aLeg2,CatB, CAT-B, OsCatB, OsCATB, OsCAT1B, CAT1B, CAT2, OsCAT2,OSA7, OsA7, osAHA7, AHA7, PAA-Hwa, OsLMPA,CATA1, Cat A1*, OSCAT-A, Cat2, CatA1, CAT-A, OsCatA, OsCAT, CAT, catA, OSCATA, OsCATc, OsCATA, OsCAT1A, CAT1, OsCAT1, OsCATC, OsCAT2
51716	35567265	Nganga E.M., Kyallo M., Orwa P., Rotich F., Gichuhi E., Kimani J.M., Mwongera D., Waweru B., Sikuku P., Musyimi D.M., Mutiga S.K., Ziyomo C., Murori R., Wasilwa L., Correll J.C., Talbot N.J.	Foliar Diseases and the Associated Fungi in Rice Cultivated in Kenya.	Plants (Basel)	11(9)		2022		
51717	35722513	Parakkunnel R., Bhojaraja Naik K., Susmita C., Girimalla V., Bhaskar K.U., Sripathy K.V., Shantharaja C.S., Aravindan S., Kumar S., Lakhanpaul S., Bhat K.V.	Evolution and co-evolution: insights into the divergence of plant heat shock factor genes.	Physiol Mol Biol Plants	28(5)	1029-1047	2022		
51718	35538611	Liao Z., Wang L., Li C., Cao M., Wang J., Yao Z., Zhou S., Zhou G., Zhang D., Lou Y.	The lipoxygenase gene OsRCI-1 is involved in the biosynthesis of herbivore-induced JAs and regulates plant defense and growth in rice.	Plant Cell Environ.	45(9)	2827-2840	2022		
51719	35684203	Ullah M.A., Abdullah-Zawawi MR., Zainal-Abidin RA., Sukiran N.L., Uddin M.I., Zainal Z.	A Review of Integrative Omic Approaches for Understanding Rice Salt Response Mechanisms.	Plants (Basel)	11(11)		2022		
51720	35596245	Handoko R.N.S., Tu C.K., Ou J.H., Chen Y.N., Lee M.H.	First report of <i>Pythium aristosporum</i> causing root rot on rice seedling in Taiwan.	Plant Dis.			2022		
51721	35683045	Abd-Rabboh HSM., Fawy K.F., Hamdy M.S., Elbehairi S.I., Shati A.A., Alfaifi M.Y., Ibrahium H.A., Alamri S., Awwad N.S.	Valorization of Rice Husk and Straw Agriculture Wastes of Eastern Saudi Arabia: Production of Bio-Based Silica, Lignocellulose, and Activated Carbon.	Materials (Basel)	15(11)		2022		
51722	35567234	Punchkhon C., Chutimanukul P., Chokwiwatkul R., Saputro T.B., Grennan A.K., Diego N., Sp?chal L., Chadchawan S.	Role of <i>LOC_Os01g68450</i>, Containing DUF2358, in salt tolerance Is Mediated via Adaptation of Absorbed Light Energy Dissipation.	Plants (Basel)	11(9)		2022		
51723	35525405	Jin S., Wang T., Zhao Y., Liu X., Wang Y., Jiang L., Zhang Q.	The heat-labile toxin B subunit of E. coli fused with VP6 from GCRV (Grass carp reovirus) was expressed and folded into an active protein in rice calli.	Protein Expr. Purif.	197	106099	2022		
51724	35596029	Zhao J., Liu X., Wang M., Xie L., Wu Z., Yu J., Wang Y., Zhang Z., Jia Y., Liu Q.	The miR528-d3 module Regulates plant height in Rice by Modulating the Gibberellin and Abscisic Acid Metabolisms.	Rice (N Y)	15(1)	27	2022		
51725	35684182	Maniruzzaman S., Rahman M.A., Hasan M., Rasul M.G., Molla A.H., Khatun H., Akter S.	Genetic Mapping to Detect Stringent QTLs Using 1k-RiCA SNP Genotyping Platform from the New Landrace Associated with salt tolerance at the Seedling Stage in Rice.	Plants (Basel)	11(11)		2022		
51726	35624639	Liu X., Chen X., Zhu X., Lin Q., Pan X., Tan X., Guo Y., Qiu J., Fang S.	Establishment and Comparative Analysis of Enzyme-Linked Immunoassay and Time-Resolved Fluoroimmunoassay for the Determination of Trace Quinclorac in Environment.	Biosensors	12(5)		2022		
51727	35599898	Nguyen H.T., Mantelin S., Ha C.V., Lorieux M., Jones J.T., Mai C.D., Bellafiore S.	Insights Into the Genetics of the Zhonghua 11 Resistance to <i>Meloidogyne graminicola</i> and Its Molecular Determinism in Rice.	Front Plant Sci	13	854961	2022		
51728	35575899	Mishra M., Rathore R.S., Joshi R., Pareek A., Singla-Pareek SL.	DTH8 overexpression induces early flowering, boosts yield, and improves stress recovery in rice cv IR64.	Physiol Plant	174(3)	e13691	2022		
51729	35681350	Wu J., Xu S., Yan X., Zhang X., Xu X., Li Q., Ye J., Liu C.	Effect of Homogenization Modified rice protein on the Pasting Properties of Rice Starch.	Foods	11(11)		2022		
51730	35633715	Fu R., Chen C., Wang J., Liu Y., Zhao L., Lu D.	Transcription Profiling of Rice Panicle in Response to crude toxin Extract of <i>Ustilaginoidea virens</i>.	Front Microbiol	13	701489	2022		
51731	35609014	Mandal B., Mondal S., Hansda B., Mishra S., Ghosh A., Biswas T., Das B., Mondal T.K., Kumari P.	Multipoint Immobilization at the Inert Center of Urease on Homofunctional Diazo-Activated Silica Gel: A Way of Restoring Room-Temperature Catalytic Sustainability for Perennial Utilization.	Langmuir	38(22)	6826-6840	2022		
51732	35684177	Park J.R., Lee C.M., Ji H., Baek M.K., Seo J., Jeong O.Y., Park H.S.	Characterization and QTL Mapping of a Major Field Resistance Locus for Bacterial Blight in Rice.	Plants (Basel)	11(11)		2022		
51733	35545208	He Q., Shen Y., Li R., Peng T., Chen N., Wu Z., Feng C.	Rice washing drainage (RWD) embedded in poly(vinyl alcohol)/sodium alginate as denitrification inoculum for high nitrate removal rate with low biodiversity.	Bioresour. Technol.	355	127288	2022		
51734	35532865	Li J., Yang H., Xu G., Deng K., Yu J., Xiang S., Zhou K., Zhang Q., Li R., Li M., Ling Y., Yang Z., He G., Zhao F.	QTL Analysis of Z414, a Chromosome Segment Substitution Line with Short, Wide Grains, and Substitution Mapping of qGL11 in Rice.	Rice (N Y)	15(1)	25	2022		
51735	35646016	Song J., Liu X., Wang Z., Zhang Z., Chen Q., Lin Z.Q., Yuan L., Yin X.	Selenium Effect Threshold for Soil Nematodes Under Rice Biofortification.	Front Plant Sci	13	889459	2022		
51736	35628122	Kgosi V.T., Tingting B., Ying Z., Liu H.	Anti-Fungal Analysis of <i>Bacillus subtilis</i> DL76 on Conidiation, Appressorium Formation, Growth, Multiple Stress Response, and Pathogenicity in <i>Magnaporthe oryzae</i>.	Int J Mol Sci	23(10)		2022		
51737	35620680	Priatama R.A., Heo J., Kim S.H., Rajendran S., Yoon S., Jeong D.H., Choo Y.K., Bae J.H., Kim C.M., Lee Y.H., Demura T., Lee Y.K., Choi E.Y., Han C.D., Park S.J.	Narrow <i>LPA1</i> Metaxylems Enhance drought tolerance and Optimize Water Use for Grain Filling in Dwarf Rice.	Front Plant Sci	13	894545	2022		
51738	35560779	Beyene G., Chauhan R.D., Villmer J., Husic N., Wang N., Gebre E., Girma D., Chanyalew S., Assefa K., Tabor G., Gehan M., McGrone M., Yang M., Lenderts B., Schwartz C., Gao H., Gordon-Kamm W., Taylor N.J., MacKenzie DJ.	CRISPR/Cas9-mediated tetra-allelic mutation of the 'Green Revolution' SEMIDWARF-1 (SD-1) gene confers lodging resistance in tef (Eragrostis tef).	Plant Biotechnol. J.			2022		
51739	35715058	Wang H., Zhang C., Chen G., Li Y., Yang X., Han L., Peng Y.	Downregulation of the CsABCC2 gene is associated with Cry1C resistance in the striped stem borer Chilo suppressalis.	Pestic Biochem Physiol	184	105119	2022		
51740	35442537	Zhao B., Zhang H., Chen T., Ding L., Zhang L., Ding X., Zhang J., Qian Q., Xiang Y.	Sdr4 dominates pre-harvest sprouting and facilitates adaptation to local climatic condition in Asian cultivated rice.	J Integr Plant Biol	64(6)	1246-1263	2022		
51741	35655780	Zhang R., Zhang X.F., Chi Y., Xu Y., Chen H., Guo Z., Wei T.	Nucleoprotein of a Rice Rhabdovirus Serves as the Effector to Attenuate Hemolymph Melanization and Facilitate Viral Persistent Propagation in its Leafhopper Vector.	Front Immunol	13	904244	2022		
51742	35681841	Ji D., Su X., Yao J., Zhang W., Wang R., Zhang S.	Genetic Diversity and Genetic Differentiation of Populations of Golden-Backed Carp (<i>Cyprinus carpio</i> var. <i>Jinbei</i>) in Traditional Rice Fields in Guizhou, China.	Animals (Basel)	12(11)		2022		
51743	35394032	Garg T., Singh Z., Chennakesavulu K., Mushahary K.K.K., Dwivedi A.K., Varapparambathu V., Singh H., Singh R.S., Sircar D., Chandran D., Prasad K., Jain M., Yadav S.R.	Species-specific function of conserved regulators in orchestrating rice root architecture.	Development	149(9)		2022		
51744	35568281	Eichkorn T., Bauer J., Bahn E., Lischalk J.W., Meixner E., Sandrini E., Regnery S., Held T., H?rner-Rieber J., Alber M., Herfarth K., Debus J., K?nig L., Harrabi S.	Radiation-induced contrast enhancement following proton radiotherapy for low-grade glioma depends on tumor characteristics and is rarer in children than adults.	Radiother Oncol	172	54-64	2022		
51745	35561852	Qin S., Fan Y., Hu S., Wang Y., Wang Z., Cao Y., Liu Q., Tan S., Dai Z., Zhou W.	iPReditor-CMG: Improving a predictive RNA editor for crop mitochondrial genomes using genomic sequence features and an optimal support vector machine.	Phytochemistry	200	113222	2022		
51746	35512695	Yue Z.L., Liu N., Deng Z.P., Zhang Y., Wu Z.M., Zhao J.L., Sun Y., Wang Z.Y., Zhang S.W.	The receptor kinase OsWAK11 monitors cell wall pectin changes to fine-tune brassinosteroid signaling and regulate cell elongation in rice.	Curr. Biol.	32(11)	2454-2466.e7	2022		
51747	35665171	Hussain T., Gollany H.T., Hussain N., Ahmed M., Tahir M., Duangpan S.	Synchronizing Nitrogen Fertilization and Planting Date to Improve Resource Use Efficiency, Productivity, and Profitability of Upland Rice.	Front Plant Sci	13	895811	2022		
51748	35534653	Reis J.B., Pelisser G., Levandoski W.M.K., Ferrazzo S.T., Mota J.D., Silveira A.A., Korf E.P.	Experimental investigation of binder based on rice husk ash and eggshell lime on soil stabilization under acidic attack.	Sci Rep	12(1)	7542	2022		
51749	35707315	Melaku G., Guangfu H., Shilai Z., Labroo M., Rhodes B., Harold E., Hu F.	Single marker analysis for leaf gas exchange traits from RILS of RD 23 (O. sativa L.) and O. longistaminata.	Biotechnol Rep (Amst)	35	e00743	2022		
51750	35702442	Zhao J., Ye Z.L., Pan X., Cai G., Wang J.	Screening the functions of modified rice straw biochar for adsorbing manganese from drinking water.	RSC Advances	12(24)	15222-15230	2022		
51751	35810577	Nisar S., Tanvir M., Ganie M.A., Kareem O., Muzaffer U., Wani I.A.	Clinical profile of patients presenting with thiamine-responsive upper-gastrointestinal upset: A pointer toward gastric beriberi.	Nutrition	102	111730	2022		
51752	35685002	Wang H., Lu S., Guan X., Jiang Y., Wang B., Hua J., Zou B.	<i>Dehydration-Responsive Element binding protein 1C</i>, <i>1E</i>, and <i>1G</i> Promote Stress Tolerance to Chilling, Heat, Drought, and Salt in Rice.	Front Plant Sci	13	851731	2022		
51753	35668808	He Z., Xin Y., Wang C., Yang H., Xu Z., Cheng J., Li Z., Ye C., Yin H., Xie Z., Jiang N., Huang J., Xiao J., Tian B., Liang Y., Zhao K., Peng J.	Genomics-Assisted Improvement of Super High-Yield Hybrid Rice Variety "Super 1000" for Resistance to Bacterial Blight and Blast Diseases.	Front Plant Sci	13	881244	2022		
51754	35605383	Yan M., Chen S.Q., Deng T.Y., Cheng Y.C., Lin H.H., Yang J.	Combined metabolomic and transcriptomic analysis evidences the interaction between sugars and phosphate in rice.	J. Plant Physiol.	274	153713	2022		
51755	35646621	Hasan M.N., Bhuiyan F.H., Hoque H., Jewel N.A., Ashrafuzzaman M., Prodhan S.H.	Ectopic expression of <i>Vigna radiata</i>'s vacuolar Na+/H+ antiporter gene (<i>VrNHX1</i>) in indica rice (<i>Oryza sativa</i> L.).	Biotechnol Rep (Amst)	35	e00740	2022		
51756	35645253	Liu S., Ma J., Jiang B., Yang G., Guo M.	Functional characterization of MoSdhB in conferring resistance to pydiflumetofen in blast fungus Magnaporthe oryzae.	Pest Manag. Sci.			2022		
51757	35529485	Jabeen Z., Irshad F., Habib A., Hussain N., Sajjad M., Mumtaz S., Rehman S., Haider W., Hassan M.N.	Alleviation of cadmium stress in rice by inoculation of <i>Bacillus cereus</i>.	PeerJ	10	e13131	2022		
51758	35702249	Ratsameetammajak N., Autthawong T., Chairuangsri T., Kurata H., Yu A.S., Sarakonsri T.	Rice husk-derived nano-SiO2 assembled on reduced graphene oxide distributed on conductive flexible polyaniline frameworks towards high-performance lithium-ion batteries.	RSC Advances	12(23)	14621-14630	2022		
51759	35491933	Zhang G., Cui K., Li G., Pan J., Huang J., Peng S.	Stem small vascular bundles have greater accumulation and translocation of non-structural carbohydrates than large vascular bundles in rice.	Physiol Plant	174(3)	e13695	2022		
51760	35597483	Natasha, Bibi I., Niazi N.K., Shahid M., Ali F., Masood Ul Hasan I., Rahman M.M., Younas F., Hussain M.M., Mehmood T., Shaheen S.M., Naidu R., Rinklebe J.	Distribution and ecological risk assessment of trace elements in the paddy soil-rice ecosystem of Punjab, Pakistan.	Environ. Pollut.	307	119492	2022		
51761	35527698	Wang F., Liu H.W., Zhang L., Liu S.T., Zhang J.R., Zhou X., Wang P.Y., Yang S.	Discovery of novel rost-4-ene derivatives as potential plant activators for preventing phytopathogenic bacterial infection: Design, synthesis and biological studies.	Pest Manag. Sci.	78(8)	3404-3415	2022		
51762	35559826	Ashoor S., Mallapureddy K.K., Sukumaran R.K.	Sequential mild acid and alkali pretreatment of rice straw to improve enzymatic saccharification for bioethanol production.	Prep. Biochem. Biotechnol.		1-8	2022		
51763	35524572	Zhang F., Fang H., Wang M., He F., Tao H., Wang R., Long J., Wang J., Wang G.L., Ning Y.	APIP5 functions as a transcription factor and an RNA-binding protein to modulate cell death and immunity in rice.	Nucleic Acids Res.	50(9)	5064-5079	2022		
51764	35761645	Rebeira S.P., Prasantha B.D.R., Jayatilake D.V., Dunuwila G.R., Piyasiri C.H., Herath HMKWP.	A comparative study of dietary fiber content, In vitro starch digestibility and cooking quality characteristics of pigmented and non-pigmented traditional and improved rice (Oryza sativa L.).	Food Res. Int.	157	111389	2022		
51765	35312772	Wahinya F.W., Yamazaki K., Jing Z., Takami T., Kamiya T., Kajiya-Kanegae H., Takanashi H., Iwata H., Tsutsumi N., Fujiwara T., Sakamoto W.	Sorghum Ionomics Reveals the Functional SbHMA3a Allele that Limits Excess Cadmium Accumulation in Grains.	Plant Cell Physiol.	63(5)	713-728	2022		
51766	35621763	Khetnon P., Busarakam K., Sukhaket W., Niwaspragrit C., Kamolsukyeunyong W., Kamata N., Sanguansub S.	Mechanisms of Trichomes and Terpene Compounds in Indigenous and Commercial Thai Rice Varieties against Brown Planthopper.	Insects	13(5)		2022		
51767	35533206	Jia D., Liang Q., Liu H., Li G., Zhang X., Chen Q., Wang A., Wei T.	A nonstructural protein encoded by a rice reovirus induces an incomplete autophagy to promote viral spread in insect vectors.	PLoS Pathog.	18(5)	e1010506	2022		
51768	35646505	Zhao S., Gou B., Wang Y., Yang N., Duan P., Wei M., Zhang G., Wei B.	Identification and relative expression analysis of <i>CaFRK</i> gene family in pepper.	3 Biotech	12(6)	137	2022		
51769	35624781	Jan R., Khan M.A., Asaf S., Lubna, Waqas M., Park J.R., Asif S., Kim N., Lee I.J., Kim K.M.	Drought and UV Radiation Stress Tolerance in Rice Is Improved by Overaccumulation of Non-Enzymatic Antioxidant Flavonoids.	Antioxidants (Basel)	11(5)		2022		
51770	35693171	He N., Zhan G., Huang F., Abou-Elwafa SF., Yang D.	Fine Mapping and Cloning of a Major QTL <i>qPH12</i>, Which Simultaneously Affects the plant height, panicle length, Spikelet Number and Yield in Rice (<i>Oryza sativa</i> L.).	Front Plant Sci	13	878558	2022		
51771	35626949	Chen F., Lu Y., Pan L., Fan X., Li Q., Huang L., Zhao D., Zhang C., Liu Q.	The Underlying Physicochemical Properties and Starch Structures of <i>indica</i> Rice Grains with Translucent Endosperms under Low-Moisture Conditions.	Foods	11(10)		2022		
51772	35568972	Xu L., Wang J., Xiao Y., Han Z., Chai J.	Structural insight into chitin perception by chitin elicitor receptor kinase 1 of Oryza sativa.	J Integr Plant Biol			2022		
51773	35685009	Xie W., Liu W., Yu X., Zeng D., Ren D.	Fine Mapping of Rice Specific <i>mr1</i>, a Gene Determines Palea Identity.	Front Plant Sci	13	864099	2022		
51774	35525915	Xia-Yu G., Meng Z., Ming-Dong Z., Ji-Rui L., Zhong-Wei W., Jian-Wu L., Bin Z., Zhi-Yong A., Hua-Feng D.	Comparative transcriptomic analysis of the super hybrid rice Chaoyouqianhao under salt stress.	BMC Plant Biol.	22(1)	233	2022		
51775	35581907	Syauqi J., Chen R.K., Cheng A.H., Wu Y.F., Chung C.L., Lin C.C., Chou H.P., Wu H.Y., Jian J.Y., Liao C.T., Kuo C.C., Chu S.C., Tsai Y.C., Liao D.J., Wu Y.P., Abadi A.L., Sulistyowati L., Shen W.C.	Surveillance of Rice Blast Resistance Effectiveness and Emerging Virulent Isolates in Taiwan.	Plant Dis.			2022		
51776	35615123	Li P., Li Z., Liu X., Zhang H., Wang Q., Li N., Ding H., Yao F.	Development and Application of Intragenic Markers for 14 Nitrogen-Use Efficiency Genes in Rice (<i>Oryza sativa</i> L.).	Front Plant Sci	13	891860	2022		
51777	35604579	Lin S.C., Li Y., Hu F.Y., Wang C.L., Kuang Y.H., Sung C.L., Tsai S.F., Yang Z.W., Li C.P., Huang S.H., Liao C.T., Hechanova S.L., Jena K.K., Chuang W.P.	Effect of nitrogen fertilizer on the resistance of rice near-isogenic lines with BPH resistance genes.	Botanical Studies	63(1)	16	2022		
51778	35514030	Cao Z., Tang H., Cai Y., Zeng B., Zhao J., Tang X., Lu M., Wang H., Zhu X., Wu X., Yuan L., Wan J.	Natural variation of HTH5 from wild rice, Oryza rufipogon Griff., is involved in conferring high-temperature tolerance at the heading stage.	Plant Biotechnol. J.	20(8)	1591-1605	2022	HTH5	OsHTH5, qHTH5, OsPLPHP, PLPHP
51779	35522068	Chen Q., Pu X., Li X., Li R., Yang Q., Wang X., Guan M., Rengel Z.	Secrets of Phytomelatonin: Possible Roles in Darkness.	J. Exp. Bot.			2022		
51780	35575308	Liu P., He L., Mei L., Zhai W., Chen X., Ma B.	Rapid and Directional Improvement of Elite Rice Variety via Combination of Genomics and Multiplex Genome Editing.	J. Agric. Food Chem.	70(20)	6156-6167	2022		
51781	35560858	Cai Y., Zhang W., Fu Y., Shan Z., Xu J., Wang P., Kong F., Jin J., Yan H., Ge X., Wang Y., You X., Chen J., Li X., Chen W., Chen X., Ma J., Tang X., Zhang J., Bao Y., Jiang L., Wang H., Wan J.	Du13 encodes a C2 H2 zinc-finger protein that regulates Wxb pre-mRNA splicing and microRNA biogenesis in rice endosperm.	Plant Biotechnol. J.	20(7)	1387-1401	2022	RSZP23,RSP29,RSZP21B,MIR1866,RSZP21A,MIR435,MIR1850,CBP80,DU3,MIR444E,HYL1,WX1,DU13	Os-RSZ23, OsRSZ23, Os-RSZp23, OsRSZp23, RSZp23,OsRS29, Os-RS29, OsRSp29, Os-RSp29, RSp29,Os-RSZ21, OsRSZ21, RSZ21, Os-RSZp21b, OsRSZp21b, RSZp21b,miR1866, osa-miR1866, osa-MIR1866, Osa-miR1866-5p, Osa-miR1866-3p,Os-RSZ21a, OsRSZ21a, Os-RSZp21a, OsRSZp21a, RSZp21a,miR435, osa-MIR435,miR1850, osa-miR1850, osa-MIR1850, osa-miR1850.1, osa-miR1850.2, osa-miR1850.3,OsCBP80,du3, OsCBP20, OsCBP20/du3, CBP20,miR444e, osa-MIR444e,OsDRB1a, DRB1a, OsHYL1, OsDRB1-2, DRB1-2,wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx,OsDLN175, DLN175, OsSE, SE, OsDU13, ZOS6-09, OsZOS6-09
51782	35682620	Zhang X., Liu D., Gao D., Zhao W., Du H., Qiu Z., Huang J., Wen P., Wang Y., Li Q., Wang W., Xu H., He J., Liu Y., Wan J.	Cytokinin Confers Brown Planthopper Resistance by Elevating Jasmonic Acid Pathway in Rice.	Int J Mol Sci	23(11)		2022		
51783	35696912	Jonwal S., Verma N., Sinha A.K.	Regulation of photosynthetic light reaction proteins via reversible phosphorylation.	Plant Sci.	321	111312	2022		
51784	35712593	Kumar S., Seem K., Kumar S., Vinod K.K., Chinnusamy V., Mohapatra T.	<i>Pup1</i> QTL Regulates Gene Expression Through Epigenetic Modification of DNA Under Phosphate Starvation Stress in Rice.	Front Plant Sci	13	871890	2022		
51785	35682619	Pan L.X., Sun Z.Z., Zhang C.Q., Li B., Yang Q.Q., Chen F., Fan X.L., Zhao D.S., Lv Q.M., Yuan D.Y., Liu Q.Q.	Allelic Diversification of the <i>Wx</i> and <i>ALK</i> Loci in Indica Restorer Lines and Their Utilisation in Hybrid Rice Breeding in China over the Last 50 Years.	Int J Mol Sci	23(11)		2022		
51786	35891898	Ida T., Crofts N., Miura S., Matsushima R., Fujita N.	Starch Biosynthetic Protein Complex Formation in Rice <i>ss2a be2b (</i>+<i>)</i> Double Mutant Differs from Their Parental Single Mutants.	J Appl Glycosci (1999)	69(2)	23-33	2022		
51787	35563627	Dai L., Li P., Li Q., Leng Y., Zeng D., Qian Q.	Integrated Multi-Omics Perspective to Strengthen the Understanding of salt tolerance in Rice.	Int J Mol Sci	23(9)		2022		
51788	35526236	Gong Z., Ning N., Li Z., Xie X., Wilson R.A., Liu W.	Two Magnaporthe appressoria-specific (MAS) proteins, MoMAS3 and MoMAS5, are required for suppressing host innate immunity and promoting biotrophic growth in rice cells.	Mol. Plant Pathol.	23(9)	1290-1302	2022		
51789	35627193	Awad-Allah MMA., Attia K.A., Omar A.A., Dessoky E.S., Alzuaibr F.M., Alshehri M.A., Abdein M.A., Mohamed A.H.	Development of New Iso-Cytoplasmic Rice-Restorer Lines and New Rice Hybrids with Superior grain yield and Grain Quality Characteristics by Utilizing Restorers' Fertility Genes.	Genes (Basel)	13(5)		2022		
51790	35684243	Wang D., Wang J., Sun W., Qiu X., Yuan Z., Yu S.	Verifying the Breeding Value of A Rare Haplotype of <i>Chalk7, GS3,</i> and <i>Chalk5</i> to Improve Grain Appearance Quality in Rice.	Plants (Basel)	11(11)		2022	GW7,LK3,CHALK5	GL7, OsGL7, OsGW7, qGW7, qGL7, SLG7, GL7/GW7/SLG7, qPY7, GL7/SLG7, Chalk7, OsChalk7,lk3(t), lk3(t)*, SG3, GS3, SG3-GS3, OsGW3, OsGS3, RGG3/GS3/Mi/OsGGC1, RGG3, Mi, OsGGC1, GGC1, OsSYL3, SYL3, TT2, OsTT2,Chalk5, OsChalk5
51791	35534823	Ezin V., Ahanchede W.W., Ayenan M.A.T., Ahanchede A.	Physiological and agronomical evaluation of elite rice varieties for adaptation to heat stress.	BMC Plant Biol.	22(1)	236	2022		
51792	35739975	Kim Y.S., Park S.I., Kim J.J., Shin S.Y., Kwak S.S., Lee C.H., Park H.M., Kim Y.H., Kim I.S., Yoon H.S.	Over-Expression of Dehydroascorbate Reductase Improves Salt Tolerance, Environmental Adaptability and Productivity in <i>Oryza sativa</i>.	Antioxidants (Basel)	11(6)		2022		
51793	35627291	Awad-Allah MMA., Attia K.A., Omar A.A., Mohamed A.H., Habiba R.M., Alzuaibr F.M., Alshehri M.A., Alqurashi M., Aloufi S., Dessoky E.S., Abdein M.A.	Combining Ability and Gene Action Controlling Agronomic Traits for Cytoplasmic Male Sterile Line, Restorer Lines, and New Hybrids for Developing of New Drought-Tolerant Rice Hybrids.	Genes (Basel)	13(5)		2022		
51794	35606708	Sanchez D.L., Samonte S.O.P., Alpuerto J.B.B., Croaker P.A., Morales K.Y., Yang Y., Wilson L.T., Tabien R.E., Yan Z., Thomson M.J., Septiningsih E.M.	Phenotypic variation and genome-wide association studies of main culm panicle node number, maximum node production rate, and degree-days to heading in rice.	BMC Genomics	23(1)	390	2022		
51795	35624782	Hwang O.J., Back K.	Molecular Regulation of Antioxidant Melatonin Biosynthesis by Brassinosteroid Acting as an Endogenous Elicitor of Melatonin Induction in Rice Seedlings.	Antioxidants (Basel)	11(5)		2022	D11,D61,ROMT9,RAVL1,ASMT1,TDC1,D2,TDC3,2ODD11,SL,TDC2,HDAC10	d11(d8), dwf10, d8, D11/CYP724B1, d11, CYP724B1, GNS4, OsD11, PMM1, OsPMM1, PMM1/D11, NBG4, OsCPB1, CPB1, CPB1/D11,d61*, dwf42, d61, OsBRI1, OSBRI1, BRI1, Os BRI1, Osbri1, OsBRKq1, BRKq1,COMT, OsCOMT, ROMT-9, OsCOMT1, OsCAldOMT1, CAldOMT1, OsOMT, OsCOMT15, COMT15,RAVL, OsRAVL1, OsNGA3, NGA3,ZRP4, OMT, ASMT, OsASMT, OsASMT1, ASMT1, OsASMT13, OsCOMT19, COMT19,OsTDC, TDC, TDC2, OsTDC1, OsTDC4,d2, dwf2, CYP90D2, D2/CYP90D2, OsD2, SMG11, OsSMG11, D2/SMG11, OsD2a, OsD2b,OsTDC3, OsTDC5,OsODD11, ODD11, 2-ODD11, Os2-ODD11, 2ODD11, Os2ODD11, M3H, OsM3H,OsSL, sl (spl1), sl*, sl, spl1, CYP71P1, Os CYP71P1, T5H, OsT5H, CYP71A1, OsCYP71A1, OsLLM1, LLM1, LLM1/OsSL, ELL1, OsELL1, ELL1/SL, OsT5H1,OsTDC2, OsTDC3,OsHDAC10, HDA714, OsHDA714, ASDAC, OsASDAC
51796	35671588	Gao D., Ran C., Zhang Y., Wang X., Lu S., Geng Y., Guo L., Shao X.	Effect of different concentrations of foliar iron fertilizer on chlorophyll fluorescence characteristics of iron-deficient rice seedlings under saline sodic conditions.	Plant Physiol. Biochem.	185	112-122	2022		
51797	35591785	Hu Z., Yang Z., Zhang Y., Zhang A., Lu Q., Fang Y., Lu C.	Autophagy targets Hd1 for vacuolar degradation to regulate rice flowering.	Mol Plant	15(7)	1137-1156	2022		
51798	35712584	Al-Zahrani HS., Alharby H.F., Fahad S.	Antioxidative Defense System, Hormones, and Metabolite Accumulation in Different Plant Parts of Two Contrasting Rice Cultivars as Influenced by Plant Growth Regulators Under Heat Stress.	Front Plant Sci	13	911846	2022		
51799	35712575	Samtani H., Sharma A., Khurana P.	wheat ocs-element binding factor 1 Enhances Thermotolerance by Modulating the Heat Stress Response Pathway.	Front Plant Sci	13	914363	2022		
51800	35712589	Zhang R., Wang Y., Hussain S., Yang S., Li R., Liu S., Chen Y., Wei H., Dai Q., Hou H.	Study on the Effect of Salt Stress on Yield and Grain Quality Among Different Rice Varieties.	Front Plant Sci	13	918460	2022		
51801	35584097	Pariasca-Tanaka J., Rakotondramanana M.F., Tojo Mangaharisoa S., Ranaivo H.N., Tanaka R., Wissuwa M.	Phenotyping of a rice (Oryza sativa L.) association panel identifies loci associated with tolerance to low soil fertility on smallholder farm conditions in Madagascar.	PLoS ONE	17(5)	e0262707	2022		
51802	35631716	ElShamey E.A.Z., Hamad H.S., Alshallash K.S., Alghuthaymi M.A., Ghazy M.I., Sakran R.M., Selim M.E., ElSayed M.A.A., Abdelmegeed T.M., Okasha S.A., Behiry S.I., Boudiar R., Mansour E.	Growth Regulators Improve Outcrossing Rate of Diverse Rice Cytoplasmic Male Sterile Lines through Affecting Floral Traits.	Plants (Basel)	11(10)		2022		
51803	35639605	Danila F., Schreiber T., Ermakova M., Hua L., Vlad D., Lo S.F., Chen Y.S., Lambret-Frotte J., Hermanns A.S., Athmer B., von Caemmerer S., Yu S.M., Hibberd J.M., Tissier A., Furbank R.T., Kelly S., Langdale J.A.	A single promoter-TALE system for tissue-specific and tuneable expression of multiple genes in rice.	Plant Biotechnol. J.			2022		
51804	35581217	Chen G., Zheng D., Feng N., Zhou H., Mu D., Zhao L., Shen X., Rao G., Meng F., Huang A.	Physiological mechanisms of ABA-induced salinity tolerance in leaves and roots of rice.	Sci Rep	12(1)	8228	2022		
51805	35612779	Eragam A., Shukla V., Kola V.S., Latha P., Akkareddy S., Kommana M.L., Ramireddy E., Vemireddy L.R.	Yield-associated putative gene regulatory networks in Oryza sativa L. subsp. indica and their association with high-yielding genotypes.	Mol. Biol. Rep.	49(8)	7649-7663	2022		
51806	35588961	Kong F., Lu S.	Effects of microbial organic fertilizer (MOF) application on cadmium uptake of rice in acidic paddy soil: Regulation of the iron oxides driven by the soil microorganisms.	Environ. Pollut.	307	119447	2022		
51807	35684236	Sanghamitra P., Barik S.R., Bastia R., Mohanty S.P., Pandit E., Behera A., Mishra J., Kumar G., Pradhan S.K.	Detection of Genomic Regions Controlling the Antioxidant Enzymes, Phenolic Content, and Antioxidant Activities in Rice Grain through Association Mapping.	Plants (Basel)	11(11)		2022		
51808	35638426	Gong L., Lou Q., Yu C., Chen Y., Hong J., Wu W., Fan S., Chen L., Liu C.	GpemDB: A Scalable Database Architecture with the Multi-omics Entity-relationship Model to Integrate Heterogeneous Big-data for Precise Crop Breeding.	Front Biosci (Landmark Ed)	27(5)	159	2022		
51809	35325033	Liu J., Tang X., Cui S., Guan X.	Predicting the function of rice proteins through Multi-instance Multi-label Learning based on multiple features fusion.	Brief. Bioinformatics	23(3)		2022		
51810	35505282	Wang A., Ma L., Shu X., Jiang Y., Liang J., Zheng A.	Rice (Oryza sativa L.) cytochrome P450 protein 716A subfamily CYP716A16 regulates disease resistance.	BMC Genomics	23(1)	343	2022	CYP716A16,AOC,AOS2,ACS2	OsCYP716A16,OsAOC, AOC1, OsAOC1, HB, CPM2, OsAOC4, AOC4,OsAOS2, CYP74A2, OsAOS, OsAOS1,OsACS2, Os-ACS2
51811	35653975	Luo Q., Bai B., Xie Y., Yao D., Zhang D., Chen Z., Zhuang W., Deng Q., Xiao Y., Wu J.	Effects of Cd uptake, translocation and redistribution in different hybrid rice varieties on grain Cd concentration.	Ecotoxicol. Environ. Saf.	240	113683	2022		
51812	35524459	Wu Y., Ren Q., Zhong Z., Liu G., Han Y., Bao Y., Liu L., Xiang S., Liu S., Tang X., Zhou J., Zheng X., Sretenovic S., Zhang T., Qi Y., Zhang Y.	Genome-wide analyses of PAM-relaxed Cas9 genome editors reveal substantial off-target effects by ABE8e in rice.	Plant Biotechnol. J.			2022		
51813	35325050	Liu M., Sun Z.L., Zeng Z., Lam K.M.	MGF6mARice: prediction of DNA N6-methyladenine sites in rice by exploiting molecular graph feature and residual block.	Brief. Bioinformatics	23(3)		2022		
51814	35681491	Butt H., Bazin J., Prasad KVSK., Awad N., Crespi M., Reddy A.S.N., Mahfouz M.M.	The Rice Serine/Arginine Splicing Factor RS33 Regulates Pre-mRNA Splicing during Abiotic Stress Responses.	Cells	11(11)		2022	SDRLP11,BZIP19,_,SRP20,UCH5,_,_,WRKY1,RSP33,RSP29,IRO2	SDRLP-11, OsSDRLP-11, OsSDRLP11,OsbZIP19,,Os-SR40, OsSR40, SR40, OsSRp20, Os-SRp20, SF2, OsSF2,OsUCH5,,,OsWRKY1, OsWRKY1v2,OsRS33, Os-RS33, OsRSp33, Os-RSp33, RS33, RS33.2,OsRS29, Os-RS29, OsRSp29, Os-RSp29, RSp29,OsIRO2, OsbHLH056, bHLH056, bHLH56, OsbHLH56
51815	35643031	Gu S., Lian F., Han Y., Wang Z., Xing B.	Effect of root exudates on the release, surface property, colloidal stability, and phytotoxicity of dissolved black carbon.	Ecotoxicol. Environ. Saf.	239	113687	2022		
51816	35587520	Choi S.Y., Lee Y.J., Seo H.U., Kim J.H., Jang C.S.	Physio-biochemical and molecular characterization of a rice drought-insensitive TILLING line 1 (ditl1) mutant.	Physiol Plant	174(3)	e13718	2022	DITL1	WSD1, OsWSD1, OsDITL1
51817	35598224	Imran M., Liu Y., Shafiq S., Abbas F., Ilahi S., Rehman N., Ahmar S., Fiaz S., Baran N., Pan S., Mo Z., Tang X.	Transcriptional cascades in the regulation of 2-AP biosynthesis under Zn supply in fragrant rice.	Physiol Plant	174(3)	e13721	2022		
51818	35599889	Yu S., Yang F., Zou Y., Yang Y., Li T., Chen S., Wang Y., Xu K., Xia H., Luo L.	Overexpressing <i>PpBURP2</i> in Rice Increases Plant Defense to Abiotic Stress and Bacterial Leaf Blight.	Front Plant Sci	13	812279	2022		
51819	35607392	Mondal K.K., Kulshreshtha A., Handique P.J., Borbora D., Rajrana Y., Verma G., Bhattacharya A., Qamar A., Lakshmi A., Reddy K., Soni M., Ghoshal T., Rashmi E.R., Mrutyunjaya S., Kalaivanan N.S., Mani C.	Rice transcriptome upon infection with <i>Xanthomonas oryzae</i> pv. <i>oryzae</i> relative to its avirulent T3SS-defective strain exposed modulation of many stress responsive genes.	3 Biotech	12(6)	130	2022		
51820	35522401	Zhou J., Huang P.W., Li X., Vaistij F.E., Dai C.C.	Generalist endophyte Phomopsis liquidambaris colonization of Oryza sativa L. promotes plant growth under nitrogen starvation.	Plant Mol. Biol.	109(6)	703-715	2022		
51821	35711319	Yang L., Yao X., Liu B., Han Y., Ji R., Ju J., Zhang X., Wu S., Fang J., Sun Y.	Caterpillar-Induced Rice Volatile (E)-beta-Farnesene Impairs the Development and Survival of <i>Chilo suppressalis</i> Larvae by Disrupting Insect Hormone Balance.	Front Physiol	13	904482	2022		
51822	35628477	Yu Y., Ma L., Wang X., Zhao Z., Wang W., Fan Y., Liu K., Jiang T., Xiong Z., Song Q., Li C., Wang P., Ma W., Xu H., Wang X., Zhao Z., Wang J., Zhang H., Bao Y.	Genome-Wide Association Study Identifies a Rice Panicle Blast Resistance Gene, <i>Pb2</i>, Encoding NLR Protein.	Int J Mol Sci	23(10)		2022	PB2,BGLU36	Pb2, OsPB2,Os11bglu36, Os11Bglu36, SFR2, sfr2
51823	35734422	Ravikiran K.T., Gopala Krishnan S., Abhijith K.P., Bollinedi H., Nagarajan M., Vinod K.K., Bhowmick P.K., Pal M., Ellur R.K., Singh A.K.	Genome-Wide Association Mapping Reveals Novel Putative Gene Candidates Governing Reproductive Stage Heat Stress Tolerance in Rice.	Front Genet	13	876522	2022		
51824	35641419	Kandhol N., Singh V.P., Wang Y., Chen Z.H., Tripathi D.K.	Ca2+ sensor-mediated ROS homeostasis: defense without yield penalty.	Trends Plant Sci.	27(9)	834-836	2022		
51825	35637632	Xu X., Du T., Mao W., Li X., Ye C.Y., Zhu Q.H., Fan L., Chu Q.	PlantcircBase 7.0: Full-length transcripts and conservation of plant circRNAs.	Plant Commun	3(4)	100343	2022		
51826	35743824	Kouzai Y., Akimoto-Tomiyama C.	A Seed-Borne Bacterium of Rice, <i>Pantoea dispersa</i> BB1, Protects Rice from the Seedling Rot Caused by the Bacterial Pathogen <i>Burkholderia glumae</i>.	Life (Basel)	12(6)		2022		
51827	35693177	Pitaloka M.K., Caine R.S., Hepworth C., Harrison E.L., Sloan J., Chutteang C., Phunthong C., Nongngok R., Toojinda T., Ruengphayak S., Arikit S., Gray J.E., Vanavichit A.	Induced Genetic Variations in Stomatal Density and Size of Rice Strongly Affects Water Use Efficiency and Responses to Drought Stresses.	Front Plant Sci	13	801706	2022		
51828	35636238	Zhang Q., Huang D., Xu C., Zhu H., Feng R.W., Zhu Q.	Fe fortification limits rice Cd accumulation by promoting root cell wall chelation and reducing the mobility of Cd in xylem.	Ecotoxicol. Environ. Saf.	240	113700	2022		
51829	35783972	Wang L., Liu Y., Zhao H., Zheng Y., Bai F., Deng S., Chen Z., Wu J., Liu X.	Identification of <i>qGL3.5</i>, a Novel Locus Controlling Grain Length in Rice Through Bulked Segregant Analysis and Fine Mapping.	Front Plant Sci	13	921029	2022	GL3.5	qGL3.5,  OsRING456, RING456
51830	35806050	Xu W., Dou Y., Geng H., Fu J., Dan Z., Liang T., Cheng M., Zhao W., Zeng Y., Hu Z., Huang W.	OsGRP3 Enhances Drought Resistance by Altering Phenylpropanoid Biosynthesis Pathway in Rice (<i>Oryza sativa</i> L.).	Int J Mol Sci	23(13)		2022		
51831	35716004	Panda A.K., Rawal H.C., Jain P., Mishra V., Nishad J., Chowrasia S., Sarkar A.K., Sen P., Naik S.K., Tapan Kumar M.	Identification and analysis of miRNAs-lncRNAs-mRNAs modules involved in stem-elongation of deepwater rice (Oryza sativa L.).	Physiol Plant		e13736	2022		
51832	35764746	Kaur P., Neelam K., Sarao P.S., Babbar A., Kumar K., Vikal Y., Khanna R., Kaur R., Mangat G.S., Singh K.	Molecular mapping and transfer of a novel brown planthopper resistance gene bph42 from Oryza rufipogon (Griff.) To cultivated rice (Oryza sativa L.).	Mol. Biol. Rep.			2022		
51833	35752642	Phillips A.L., Ferguson S., Watson-Haigh NS., Jones A.W., Borevitz J.O., Burton R.A., Atwell B.J.	The first long-read nuclear genome assembly of Oryza australiensis, a wild rice from northern Australia.	Sci Rep	12(1)	10823	2022		
51834	35715647	Xia D., Zhou H., Wang Y., Ao Y., Li Y., Huang J., Wu B., Li X., Wang G., Xiao J., Liu Q., He Y.	qFC6, a major gene for crude fat content and quality in rice.	Theor. Appl. Genet.	135(8)	2675-2685	2022		
51835	35690904	Qu R., Zhang P., Liu Q., Wang Y., Guo W., Du Z., Li X., Yang L., Yan S., Gu X.	Genome-edited ATP BINDING CASSETTE B1 transporter SD8 knockouts show optimized rice architecture without yield penalty.	Plant Commun		100347	2022		
51836	35377451	Ouyang X., Zhong X., Chang S., Qian Q., Zhang Y., Zhu X.	Partially functional NARROW LEAF1 balances leaf photosynthesis and plant architecture for greater rice yield.	Plant Physiol.	189(2)	772-789	2022		
51837	35783927	Farooq M., Asif S., Jang Y.H., Park J.R., Zhao D.D., Kim E.G., Kim K.M.	Effect of Different Salts on Nutrients Uptake, Gene Expression, Antioxidant, and Growth Pattern of Selected Rice Genotypes.	Front Plant Sci	13	895282	2022		
51838	35769300	Deng S., Ashraf U., Nawaz M., Abbas G., Tang X., Mo Z.	Water and Nitrogen Management at the Booting Stage Affects Yield, Grain Quality, Nutrient Uptake, and Use Efficiency of Fragrant Rice Under the Agro-Climatic Conditions of South China.	Front Plant Sci	13	907231	2022		
51839	35703983	Mishra D.	A big role for a microRNA in regulating cold tolerance and hormone signaling in rice.	Plant Physiol.			2022		
51840	35678849	Varshney V., Majee M.	Emerging roles of the Ubiquitin-proteasome pathway in enhancing crop yield by optimizing seed agronomic traits.	Plant Cell Rep.			2022		
51841	35657911	Tyagi A., Shabbir U., Chen X., Chelliah R., Elahi F., Ham H.J., Oh D.H.	Phytochemical profiling and cellular antioxidant efficacy of different rice varieties in colorectal adenocarcinoma cells exposed to oxidative stress.	PLoS ONE	17(6)	e0269403	2022		
51842	35266538	Premachandran Y.	Triggered in distress: a miRNA-controlled switch for drought-induced ABA biosynthesis in rice.	Plant Physiol.	189(2)	447-449	2022		
51843	35648686	Kawakami Y., Gruissem W., Bhullar N.K.	Novel rice iron biofortification approaches using expression of ZmYS1 and OsTOM1 controlled by tissue-specific promoters.	J. Exp. Bot.			2022		
51844	35910441	Sah R.P., Behera S., Dash S.K., Azharudheen T.P.M., Meher J., Kumar A., Marndi B.C., Kar M.K., Subudhi H.N., Anilkumar C.	Unravelling genetic architecture and development of core set from elite rice lines using yield-related candidate gene markers.	Physiol Mol Biol Plants	28(6)	1217-1232	2022		
51845	35716230	Li D., Zhang F., Pinson S.R.M., Edwards J.D., Jackson A.K., Xia X., Eizenga G.C.	Assessment of Rice Sheath Blight Resistance Including Associations with Plant Architecture, as Revealed by Genome-Wide Association Studies.	Rice (N Y)	15(1)	31	2022		
51846	35662383	Miura S., Narita M., Crofts N., Itoh Y., Hosaka Y., Oitome N.F., Abe M., Takahashi R., Fujita N.	Improving Agricultural Traits While Maintaining High Resistant Starch Content in Rice.	Rice (N Y)	15(1)	28	2022		
51847	35703064	Haghi R., Ahmadikhah A., Fazeli A., Shariati V.	Candidate genes for anthocyanin pigmentation in rice stem revealed by GWAS and whole-genome resequencing.	Plant Genome		e20224	2022		
51848	35678753	Xue C., Liu G., Sun S., Liu X., Guo R., Cheng Z., Yu H., Gu M., Liu K., Zhou Y., Zhang T., Gong Z.	De novo centromere formation in pericentromeric region of rice chromosome 8.	Plant J.	111(3)	859-871	2022		
51849	35806236	Jiang M., Yu N., Zhang Y., Liu L., Li Z., Wang C., Cheng S., Cao L., Liu Q.	Deletion of Diterpenoid Biosynthetic Genes <i>CYP76M7</i> and <i>CYP76M8</i> Induces Cell Death and Enhances Bacterial Blight Resistance in <i>Indica</i> Rice <i>'9311'</i>.	Int J Mol Sci	23(13)		2022		
51850	35748735	Md Zali AZ., Ja'afar Y., Paramisparan K., Ismail S.I., Saad N., Mohd Hata E., Md Hatta MA., Ismail M.R., Yusof M.T., Zulperi D.	First report of Burkholderia gladioli causing bacterial panicle blight of rice in Malaysia.	Plant Dis.			2022		
51851	35845668	Wang Z., Jia Y., Fu J., Qu Z., Wang X., Zou D., Wang J., Liu H., Zheng H., Wang J., Yang L., Xu H., Zhao H.	An Analysis Based on Japonica Rice Root Characteristics and Crop Growth Under the Interaction of Irrigation and Nitrogen Methods.	Front Plant Sci	13	890983	2022		
51852	35751381	Liu H., Liu S., Yu H., Huang X., Wang Y., Jiang L., Meng X., Liu G., Chen M., Jing Y., Yu F., Wang B., Li J.	An engineered platform for reconstituting functional multisubunit SCF E3 ligase in?vitro.	Mol Plant	15(8)	1285-1299	2022		
51853	35755680	Fu Y., Luo T., Hua Y., Yan X., Liu X., Liu Y., Liu Y., Zhang B., Liu R., Zhu Z., Zhu J.	Assessment of the Characteristics of Waxy Rice Mutants Generated by CRISPR/Cas9.	Front Plant Sci	13	881964	2022		
51854	35812754	Muvunyi B.P., Zou W., Zhan J., He S., Ye G.	Multi-Trait Genomic Prediction Models Enhance the Predictive Ability of Grain Trace Elements in Rice.	Front Genet	13	883853	2022		
51855	35743040	Peng X., Yu W., Chen Y., Jiang Y., Ji Y., Chen L., Cheng B., Wu J.	A Maize CBM Domain Containing the Protein ZmCBM48-1 Positively Regulates Starch Synthesis in the Rice Endosperm.	Int J Mol Sci	23(12)		2022		
51856	35274732	Li J., Wang D., Sun S., Sun L., Zong J., Lei Y., Yu J., Liang W., Zhang D.	The regulatory role of CARBON STARVED ANTHER-mediated photoperiod-dependent male fertility in rice.	Plant Physiol.	189(2)	955-971	2022	SWEET6B,CSA,STP14,PRR95,STP18,MST1,SWEET5,SWEET6A,CIN7,CCA1,CIN3	OsSWEET6b, SWEET6b,csa, OsCSA,OsSTP14,OsPRR95, Os-PRR95, Prr2, OsPRR2, OsCCT33,OsSTP18,OsMST1, OsSTP1, STP1,OsSWEET5,OsSWEET6a, SWEET6a,OsCIN6, OsCIN7, CIN6, CWIN6, OsCWIN6 ,OsCCA1, OsLHY, LHY, LHY-like_chr.8, COC1, DLN203, OsDLN203, LEM1, OsLEM1, Nhd1, OsNhd1,OSINV4, OsINV4, INV4, OsCIN3
51857	35783933	Wang J.Y., Jamil M., Hossain M.G., Chen G.E., Berqdar L., Ota T., Blilou I., Asami T., Al-Solimani SJ., Mousa M.A.A., Al-Babili S.	Evaluation of the Biostimulant Activity of Zaxinone Mimics (MiZax) in Crop Plants.	Front Plant Sci	13	874858	2022		
51858	35800077	Sainao W., Shi Z., Pang H., Feng H.	Alleviative effects of magnetic Fe3O4 nanoparticles on the physiological toxicity of 3-nitrophenol to rice (<i>Oryza sativa</i> L.) seedlings.	Open Life Sci	17(1)	626-640	2022		
51859	35512346	Li K., Zhang S., Tang S., Zhang J., Dong H., Yang S., Qu H., Xuan W., Gu M., Xu G.	The rice transcription factor nhd1 regulates root growth and nitrogen uptake by activating nitrogen transporters.	Plant Physiol.	189(3)	1608-1624	2022		
51860	35883474	Ma Y., Mackon E., Jeazet Dongho Epse Mackon GC., Zhao Y., Li Q., Dai X., Yao Y., Xia X., Nong B., Liu P.	Combined Analysis of BSA-Seq Based Mapping, RNA-Seq, and Metabolomic Unraveled Candidate Genes Associated with Panicle grain number in Rice (<i>Oryza sativa</i> L.).	Biomolecules	12(7)		2022		
51861	35845644	Zhou J., Yang Y., Lv Y., Pu Q., Li J., Zhang Y., Deng X., Wang M., Wang J., Tao D.	Interspecific Hybridization Is an Important Driving Force for Origin and Diversification of Asian Cultivated Rice <i>Oryza sativa</i> L.	Front Plant Sci	13	932737	2022		
51862	35806066	Salava H., Thula S., S?nchez AS., Nodzy?ski T., Maghuly F.	Genome Wide Identification and Annotation of NGATHA Transcription Factor Family in Crop Plants.	Int J Mol Sci	23(13)		2022	NGA1,NGAL1-2,RAVL1,RAP2.8,RAV6,NGA5,NGA4	OsNGA1,OsNGAL1-2,RAVL, OsRAVL1, OsNGA3, NGA3,OsRAP2.8, NGAL1-1, OsNGAL1-1,OsRAV6, OsNGA2, NGA2,OsNGA5,OsNGA4
51863	35714480	Guo J., Chen M., Huang Y., Xie S., Zhang X., Zuo T., Hu C., Wang G.	Chloride application weakens cadmium immobilization by lime in paddy rice soil.	Ecotoxicol. Environ. Saf.	241	113761	2022		
51864	35910447	Basit F., Nazir M.M., Shahid M., Abbas S., Javed M.T., Naqqash T., Liu Y., Yajing G.	Application of zinc oxide nanoparticles immobilizes the chromium uptake in rice plants by regulating the physiological, biochemical and cellular attributes.	Physiol Mol Biol Plants	28(6)	1175-1190	2022		
51865	35770168	Khumairah F.H., Setiawati M.R., Fitriatin B.N., Simarmata T., Alfaraj S., Ansari M.J., Enshasy H.A.E., Sayyed R.Z., Najafi S.	Halotolerant Plant Growth-Promoting Rhizobacteria Isolated From Saline Soil Improve Nitrogen Fixation and Alleviate Salt Stress in Rice Plants.	Front Microbiol	13	905210	2022		
51866	35243491	Pachamuthu K., Hari Sundar V., Narjala A., Singh R.R., Das S., Avik Pal HCY., Shivaprasad P.V.	Nitrate-dependent regulation of miR444-OsMADS27 signalling cascade controls root development in rice.	J. Exp. Bot.	73(11)	3511-3530	2022		
51867	35686643	Kamble N.U., Majee M.	ABI transcription factors and PROTEIN L-ISOASPARTYL METHYLTRANSFERASE module mediate seed desiccation tolerance and longevity in Oryza sativa.	Development	149(11)		2022		
51868	35705850	Ha W., Yamaguchi T., Iwakami S., Sunohara Y., Matsumoto H.	Comparison of herbicide specificity of CYP81A cytochrome P450s from rice and a multiple-herbicide resistant weed, Echinochloa phyllopogon.	Pest Manag. Sci.			2022		
51869	35750704	Iwamoto M.	In-frame editing of transcription factor gene RDD1 to suppress miR166 recognition influences nutrient uptake, photosynthesis, and grain quality in rice.	Sci Rep	12(1)	10795	2022		
51870	35800606	Zeng D., Cui J., Yin Y., Dai C., Zhao H., Song C., Guan S., Cheng D., Sun Y., Lu W.	Combining Proteomics and Metabolomics to Analyze the Effects of Spaceflight on Rice Progeny.	Front Plant Sci	13	900143	2022		
51871	35698176	Koo H., Kim S., Park H.S., Lee S.J., Paek N.C., Cho J., Yang T.J.	Amplification of LTRs of extrachromosomal linear DNAs (ALE-seq) identifies two active Oryco LTR retrotransposons in the rice cultivar Dongjin.	Mob DNA	13(1)	18	2022		
51872	35546447	Li X., Tian X., He M., Liu X., Li Z., Tang J., Mei E., Xu M., Liu Y., Wang Z., Guan Q., Meng W., Fang J., Zhang J., Bu Q.	bZIP71 delays flowering by suppressing Ehd1 expression in rice.	J Integr Plant Biol	64(7)	1352-1363	2022		
51873	35741806	Carvalho-Moore P., Rangani G., Langaro A.C., Srivastava V., Porri A., Bowe S.J., Lerchl J., Roma-Burgos N.	Field-Evolved <i>DeltaG210-ppo2</i> from Palmer Amaranth Confers Pre-emergence Tolerance to PPO-Inhibitors in Rice and <i>Arabidopsis</i>.	Genes (Basel)	13(6)		2022		
51874	35832226	Zhang Y., Wang J., Pu Q., Yang Y., Lv Y., Zhou J., Li J., Deng X., Wang M., Tao D.	Understanding the Nature of hybrid sterility and Divergence of Asian Cultivated Rice.	Front Plant Sci	13	908342	2022		
51875	35682951	Huang Y., Chen F., Chai M., Xi X., Zhu W., Qi J., Liu K., Ma S., Su H., Tian Y., Zhang H., Qin Y., Cai H.	Ectopic Overexpression of Pineapple Transcription Factor AcWRKY31 Reduces Drought and salt tolerance in Rice and <i>Arabidopsis</i>.	Int J Mol Sci	23(11)		2022		
51876	35247044	Rong C., Liu Y., Chang Z., Liu Z., Ding Y., Ding C.	Cytokinin oxidase/dehydrogenase family genes exhibit functional divergence and overlap in rice growth and development, especially in control of tillering.	J. Exp. Bot.	73(11)	3552-3568	2022		
51877	35701545	Zhang L., Chu C.	Selenium Uptake, Transport, Metabolism, Reutilization, and Biofortification in Rice.	Rice (N Y)	15(1)	30	2022		
51878	35728526	Yang Z.	Plant growth: A matter of WAK seeing the wall and talking to BRI1.	Curr. Biol.	32(12)	R564-R566	2022		
51879	35485235	Zhou D., Zou T., Zhang K., Xiong P., Zhou F., Chen H., Li G., Zheng K., Han Y., Peng K., Zhang X., Yang S., Deng Q., Wang S., Zhu J., Liang Y., Sun C., Yu X., Liu H., Wang L., Li P., Li S.	DEAP1 encodes a fasciclin-like arabinogalactan protein required for male fertility in rice.	J Integr Plant Biol	64(7)	1430-1447	2022		
51880	35736502	Liu G., Wang Z.M., Du N., Zhang Y., Wei Z., Tang X.J., Zhao L., Li C., Deng Y.Y., Zhang M.W.	Recombinant rice quiescin sulfhydryl oxidase Strengthens the Gluten Structure through Thiol/Disulfide Exchange and Hydrogen Peroxide Oxidation.	J. Agric. Food Chem.	70(29)	9106-9116	2022		
51881	35736769	Kim G.E., Kim M.S., Sung J.	UVB Irradiation-Induced Transcriptional Changes in Lignin- and Flavonoid Biosynthesis and Indole/Tryptophan-Auxin-Responsive Genes in Rice Seedlings.	Plants (Basel)	11(12)		2022		
51882	35735291	Xi Y., Cesari S., Kroj T.	Insight into the structure and molecular mode of action of plant paired NLR immune receptors.	Essays Biochem.			2022		
51883	35761993	Awasthi S., Chauhan R., Indoliya Y., Chauhan A.S., Mishra S.K., Agrawal L., Dwivedi S., Singh S.N., Srivastava S., Singh P.C., Chauhan P.S., Chakrabarty D., Srivastava S., Tripathi R.D.	Comprehensive illustration of transcriptomic and proteomic dataset for mitigation of arsenic toxicity in rice (<i>Oryza sativa</i> L.) by microbial consortium.	Data Brief	43	108377	2022		
51884	35736913	Akhtar N., Khan S., Jamil M., Rehman S.U., Rehman Z.U., Rha E.S.	Combine Effect of ZnO NPs and Bacteria on Protein and Gene's Expression Profile of Rice (<i>Oryza sativa</i> L.) Plant.	Toxics	10(6)		2022		
51885	35720558	Julian J.D., Zabotina O.A.	Xyloglucan Biosynthesis: From Genes to Proteins and Their Functions.	Front Plant Sci	13	920494	2022		
51886	35743858	Chen L., Yin F., Zhang D., Xiao S., Zhong Q., Wang B., Ke X., Ji Z., Wang L., Zhang Y., Jiang C., Liu L., Li J., Lu Y., Yu T., Cheng Z.	Unveiling a Novel Source of Resistance to Bacterial Blight in Medicinal Wild Rice, <i>Oryza officinalis</i>.	Life (Basel)	12(6)		2022		
51887	35755645	Sano N., Lounifi I., Cueff G., Collet B., Cl?ment G., Balzergue S., Huguet S., Valot B., Galland M., Rajjou L.	Multi-Omics Approaches Unravel Specific Features of Embryo and Endosperm in Rice Seed Germination.	Front Plant Sci	13	867263	2022		
51888	35748695	Zhang Y., Fu J., Wang K., Han X., Yan T., Su Y., Li Y., Lin Z., Qin P., Fu C., Deng X.W., Zhou D., Yang Y., He H.	The telomere-to-telomere gap-free genome of four rice parents reveals SV and PAV patterns in hybrid rice breeding.	Plant Biotechnol. J.			2022		
51889	35832217	Yang Z., Zhang Y., Xing M., Wang X., Xu Z., Huang J., Wang Y., Li F., Nie Y., Ge J., Lou D., Liu Z., Han Z., Liang Y., Zheng X., Yang Q., He H., Qiao W.	Genomic Analysis Provides Insights Into the Plant Architecture Variations in <i>in situ</i> Conserved Chinese Wild Rice (<i>Oryza rufipogon</i> Griff.).	Front Plant Sci	13	921349	2022		
51890	35784264	Dikitanan R.C., Pede V.O., Rejesus R.M., Bhandari H., Alam G.M.M., Andrade R.S.	Assessing returns to research investments in rice varietal development: Evidence from the Philippines and Bangladesh.	Global Food Security	33	100646	2022		
51891	35322689	Omae N., Tsuda K.	Plant-Microbiota Interactions in Abiotic Stress Environments.	Mol. Plant Microbe Interact.	35(7)	511-526	2022		
51892	35766176	Xi Y., Chalvon V., Padilla A., Cesari S., Kroj T.	The activity of the RGA5 sensor NLR from rice requires binding of its integrated HMA domain to effectors but not HMA domain self-interaction.	Mol. Plant Pathol.	23(9)	1320-1330	2022		
51893	35742990	Ji Z., Sun H., Wei Y., Li M., Wang H., Xu J., Lei C., Wang C., Zhao K.	Ectopic Expression of Executor Gene <i>Xa23</i> Enhances Resistance to Both Bacterial and Fungal Diseases in Rice.	Int J Mol Sci	23(12)		2022		
51894	35701585	Zhang H., Li X., Xu Z., Wan Z., Wang R., Zhao X., Tu G., Liang G., Gu M., Tang S.	Precise genetic mapping of Rf18(t), a new fertility restorer gene from 'Nipponbare' for wild abortive cytoplasmic male sterility in rice (Oryza sativa L.).	Theor. Appl. Genet.	135(8)	2687-2698	2022		
51895	35657937	Nosaka-Takahashi M., Kato M., Kumamaru T., Sato Y.	Measurements of the number of specified and unspecified cells in the shoot apical meristem during a plastochron in rice (Oryza sativa) reveal the robustness of cellular specification process in plant development.	PLoS ONE	17(6)	e0269374	2022		
51896	35754795	Singh R., Kaur N., Praba U.P., Kaur G., Tanin M.J., Kumar P., Neelam K., Sandhu J.S., Vikal Y.	A Prospective Review on Selectable Marker-Free Genome Engineered Rice: Past, Present and Future Scientific Realm.	Front Genet	13	882836	2022		
51897	35845647	Yang W., Hao Q., Liang J., Tan Q., Luan X., Lin S., Zhu H., Bu S., Liu Z., Liu G., Wang S., Zhang G.	Fine Mapping of Two Major Quantitative Trait Loci for Rice Chalkiness With High Temperature-Enhanced Additive Effects.	Front Plant Sci	13	957863	2022		
51898	35754717	Kumar R., Khatri A., Acharya V.	Deep learning uncovers distinct behavior of rice network to pathogens response.	iScience	25(7)	104546	2022		
51899	35747367	Yang Z., Zhang H., Tan X., Wei Z., Wen C., Sun Z., Sun B., Chen J.	Insights Into the Effect of Rice Stripe Virus P2 on Rice Defense by Comparative Proteomic Analysis.	Front Microbiol	13	897589	2022	_	
51900	35713092	Biswas S., Ibarra O., Shaphek M., Molina-Risco M., Faion-Molina M., Bellinatti-Della Gracia M., Thomson M.J., Septiningsih E.M.	Increasing the level of resistant starch in 'Presidio' rice through multiplex CRISPR-Cas9 gene editing of starch branching enzyme genes.	Plant Genome		e20225	2022		
51901	35747883	Tan Q., Bu S., Chen G., Yan Z., Chang Z., Zhu H., Yang W., Zhan P., Lin S., Xiong L., Chen S., Liu G., Liu Z., Wang S., Zhang G.	Reconstruction of the High Stigma Exsertion Rate Trait in Rice by Pyramiding Multiple QTLs.	Front Plant Sci	13	921700	2022		
51902	35807670	Xie L., Li H., Zhong Z., Guo J., Hu G., Gao Y., Tong Z., Liu M., Hu S., Tong H., Zhang P.	Metabolome Analysis under Aluminum Toxicity between Aluminum-Tolerant and -Sensitive Rice (<i>Oryza sativa</i> L.).	Plants (Basel)	11(13)		2022		
51903	35706016	Zhou Y., Zhang C., Zhang L., Ye Q., Liu N., Wang M., Long G., Fan W., Long M., Wing R.A.	Gene fusion as an important mechanism to generate new genes in the genus Oryza.	Genome Biol.	23(1)	130	2022		
51904	35720578	Sun J., Liang W., Ye S., Chen X., Zhou Y., Lu J., Shen Y., Wang X., Zhou J., Yu C., Yan C., Zheng B., Chen J., Yang Y.	Whole-Transcriptome Analysis Reveals Autophagy Is Involved in Early Senescence of <i>zj-es</i> Mutant Rice.	Front Plant Sci	13	899054	2022	ZJ-ES	OsZJ-ES
51905	35699859	Sun L., Deng R., Liu J., Lai M., Wu J., Liu X., Shahid M.Q.	An overview of sucrose transporter (SUT) genes family in rice.	Mol. Biol. Rep.	49(6)	5685-5695	2022		
51906	35728534	Chamberlain-Irwin HN., Hufford M.B.	Convergent domestication: Finding the genes that?make crops.	Curr. Biol.	32(12)	R585-R588	2022		
51907	35755644	Yang Z., Xu J., Du L., Yin J., Wang Z., Yi F., Duan L., Li Z., Wang B., Shu K., Tan W.	Design, Synthesis, and Action Mechanism of 1,3-Benzodioxole Derivatives as Potent auxin receptor Agonists and Root Growth Promoters.	Front Plant Sci	13	902902	2022		
51908	35783267	Pan Y.H., Chen L., Guo H.F., Feng R., Lou Q.J., Rashid M.A.R., Zhu X.Y., Qing D.J., Liang H.F., Gao L.J., Huang C.C., Zhao Y., Deng G.F.	Systematic Analysis of NB-ARC Gene Family in Rice and Functional Characterization of <i>GNP12</i>.	Front Genet	13	887217	2022	GNP12	OsGNP12, RGH1A, OsRGH1A
51909	35744741	Zhang J., Luo J., Chen L., Ahmed T., Alotaibi S.S., Wang Y., Sun G., Li B., An Q.	Development of Droplet Digital PCR Assay for Detection of Seed-Borne <i>Burkholderia glumae</i> and <i>B. gladioli</i> Causing Bacterial Panicle Blight Disease of Rice.	Microorganisms	10(6)		2022		
51910	35696560	Sato A., Soeno K., Kikuchi R., Narukawa-Nara M., Yamazaki C., Kakei Y., Nakamura A., Shimada Y.	Indole-3-pyruvic acid regulates TAA1 activity, which plays a key role in coordinating the two steps of auxin biosynthesis.	Proc. Natl. Acad. Sci. U.S.A.	119(25)	e2203633119	2022		
51911	35807256	Gong X., Zhu L., Wang A., Xi H., Nie M., Chen Z., He Y., Tian Y., Wang F., Tong L.	Understanding the Palatability, Flavor, Starch Functional Properties and Storability of Indica-Japonica Hybrid Rice.	Molecules	27(13)		2022		
51912	35767383	Zhao Y., Han J., Tan J., Yang Y., Li S., Gou Y., Luo Y., Li T., Xiao W., Xue Y., Hao Y., Xie X., Liu Y.G., Zhu Q.	Efficient assembly of long DNA fragments and multiple genes with improved nickase-based cloning and Cre/loxP recombination.	Plant Biotechnol. J.			2022		
51913	35741921	Zhang Z., Zhang B., Zhu L., Zhao W.	Microstructure, Digestibility and Physicochemical Properties of Rice Grains after Radio Frequency Treatment.	Foods	11(12)		2022		
51914	35771648	Rehman M.U., Tayara H., Zou Q., Chong K.T.	i6mA-Caps: A CapsuleNet-based framework for identifying DNA N6-methyladenine sites.	Bioinformatics			2022		
51915	35676419	Prodhan M.A., Pariasca-Tanaka J., Ueda Y., Hayes P.E., Wissuwa M.	Comparative transcriptome analysis reveals a rapid response to phosphorus deficiency in a phosphorus-efficient rice genotype.	Sci Rep	12(1)	9460	2022		
51916	35727725	Zhang T., Xiang Y., Geng L., Jiang W., Cheng S., Zhao Y.	A Non-canonical MITE in WOX11 Promoter is Associated With Robust crown root in Rice.	Plant Cell Physiol.			2022		
51917	35716282	Nakeeb-Un-Nisa, Sakina A., Sofi N.R., Shikari A.B., Mir R.R., Bhat M.A., Waza S.A., Jan S., Rafiqee S., Khan G.H., Wani S.H.	DNA marker based diversity across rice genotypes and advanced breeding lines bred for temperate regions of North-West India.	Mol. Biol. Rep.	49(7)	7145-7155	2022		
51918	35774507	Kaur G., Yadav I.S., Bhatia D., Vikal Y., Neelam K., Dhillon N.K., Praba U.P., Mangat G.S., Singh K.	BSA-seq Identifies a Major Locus on Chromosome 6 for Root-Knot Nematode (<i>Meloidogyne graminicola</i>) Resistance From <i>Oryza glaberrima</i>.	Front Genet	13	871833	2022		
51919	35713657	Kumar R., Bahuguna R.N., Tiwari M., Pal M., Chinnusamy V., Sreeman S., Muthurajan R., Krishna Jagadish SV.	Walking through crossroads-rice responses to heat and biotic stress interactions.	Theor. Appl. Genet.			2022		
51920	35715277	Xiao B., Li P., Wu Q.	Weak allele versus null allele: which one to select?	Trends Genet.			2022		
51921	35635763	Chakraborty T., Trujillo J.T., Kendall T., Mosher R.A.	A null allele of the Pol IV second subunit impacts stature and reproductive development in Oryza sativa.	Plant J.	111(3)	748-755	2022		
51922	35253881	Zhao W., Wang X., Zhang Q., Zheng Q., Yao H., Gu X., Liu D., Tian X., Wang X., Li Y., Zhu Z.	H3K36 demethylase JMJ710 negatively regulates drought tolerance by suppressing MYB48-1 expression in rice.	Plant Physiol.	189(2)	1050-1064	2022		
51923	35579290	Park S.Y., Cho J., Jeong D.H.	Small regulatory RNAs in rice epigenetic regulation.	Biochem. Soc. Trans.	50(3)	1215-1225	2022		
51924	35596204	Yan M., Pan T., Zhu Y., Jiang X., Yu M., Wang R., Zhang F., Luo S., Bao X., Chen Y., Zhang B., Jing R., Cheng Z., Zhang X., Lei C., Lin Q., Zhu S., Guo X., Ren Y., Wan J.	FLOURY ENDOSPERM20 encoding SHMT4 is required for rice endosperm development.	Plant Biotechnol. J.	20(8)	1438-1440	2022	CADT1	OsSHM4, SHM4, OsSHMT4, SHMT4, OsSHTM1, SHTM1, OsCADT1, FLO20, OsFLO20
51925	35774823	Sharma N., Kumari S., Jaiswal D.K., Raghuram N.	Comparative Transcriptomic Analyses of Nitrate-Response in Rice Genotypes With Contrasting Nitrogen Use Efficiency Reveals Common and Genotype-Specific Processes, Molecular Targets and Nitrogen Use Efficiency-Candidates.	Front Plant Sci	13	881204	2022		
51926	35656839	Liu X.P., Gao L.J., She B.T., Li G.X., Wu Y.R., Xu J.M., Ding Z.J., Ma J.F., Zheng S.J.	A novel kinase subverts aluminium resistance by boosting ornithine decarboxylase-dependent putrescine biosynthesis.	Plant Cell Environ.	45(8)	2520-2532	2022	NAOD,ODCA,ARPK	OsNAOD,ODCa, OsODC1, ODC1 ,ArPK, OsArPK
51927	35773646	Fu J., Zhang Y., Yan T., Li Y., Jiang N., Zhou Y., Zhou Q., Qin P., Fu C., Lin H., Zhong J., Han X., Lin Z., Wang F., He H., Wang K., Yang Y.	Transcriptome profiling of two super hybrid rice provides insights into the genetic basis of?heterosis.	BMC Plant Biol.	22(1)	314	2022		
51928	35710953	Nguyen V.Q., Sreewongchai T., Siangliw M., Roytrakul S., Yokthongwattana C.	Comparative proteomic analysis of chromosome segment substitution lines of Thai jasmine rice KDML105 under short-term salinity stress.	Planta	256(1)	12	2022		
51929	35736683	Salem K.F.M., Alghuthaymi M.A., Elabd A.B., Elabsawy E.A., Mierah H.H.	Prediction of Heterosis for Agronomic Traits in Half-Diallel Cross of Rice (<i>Oryza sativa</i> L.) under Drought Stress Using Microsatellite Markers.	Plants (Basel)	11(12)		2022		
51930	35765221	Song Y., Tang Y., Liu L., Xu Y., Wang T.	The methyl-CpG-binding domain family member PEM1 is essential for Ubisch body formation and pollen exine development in rice.	Plant J.			2022	MBD710	OsDLN48, DLN48, OsMBD710, OsDLN47, DLN47, OsBrdST2, BrdST2
51931	35762882	Zhang B., Fei Y., Feng J., Zhu X., Wang R., Xiao H., Zhang H., Huang J.	RiceNCexp: A Resource for Rice Non-coding RNA Co-Expression Atlas Based on Massive RNA-seq and Small-RNA seq Data.	J. Exp. Bot.			2022		
51932	35610174	Hashida Y., Tezuka A., Nomura Y., Kamitani M., Kashima M., Kurita Y., Nagano A.J.	Fillable and unfillable gaps in plant transcriptome under field and controlled environments.	Plant Cell Environ.	45(8)	2410-2427	2022		
51933	35717235	Wang Q., Zhang J., Li Y., Wang R.	Construction of the SHP-GLOX lignin regulation system and its application in rice straw.	Plant Methods	18(1)	85	2022		
51934	35642508	Kim Y.J., Jung K.H.	WD40-domain protein GORI is an integrative scaffold that is required for pollen tube growth in rice.	Plant Signal Behav		2082678	2022		
51935	35812946	Rehman O., Uzair M., Chao H., Khan M.R., Chen M.	Decoding RNA Editing Sites Through Transcriptome Analysis in Rice Under Alkaline Stress.	Front Plant Sci	13	892729	2022		
51936	35832225	Song L., Wang X., Zou L., Prodhan Z., Yang J., Yang J., Ji L., Li G., Zhang R., Wang C., Li S., Zhang Y., Ji X., Zheng X., Li W., Zhang Z.	Cassava (<i>Manihot esculenta</i>) Slow Anion Channel (<i>MeSLAH4</i>) Gene Overexpression Enhances Nitrogen Assimilation, Growth, and Yield in Rice.	Front Plant Sci	13	932947	2022		
51937	0	Xiu-Hong Zhang, Xiao-Lan Rao, Hai-Tao Shi, Rong-Jun Li, Ying-Tang Lu	Overexpression of a cytosolic glyceraldehyde-3-phosphate dehydrogenase gene OsGAPC3 confers salt tolerance in rice	Plant Cell Tiss Organ Cult	107(1)		2011	GAPC	OsGapC3, OGapC3, OsGAPDH1, GAPDH1, OsGapC1
51938	11370871	T Tsuge, N Inagaki, T Yoshizumi, H Shimada, T Kawamoto, R Matsuki, N Yamamoto, M Matsui	Phytochrome-mediated control of COP1 gene expression in rice plants.	Mol. Genet. Genomics	265(1)	43-50	2001	PPS	OsWD40-55, OsCOP1, COP1, YEL, OsYEL, OsPPS, COP1-1, OsCOP1-1,  OsRING347, RING347
51939	19526560	Cheng Y., Qi Y., Zhu Q., Chen X., Wang N., Zhao X., Chen H., Cui X., Xu L., Zhang W.	New changes in the plasma-membrane-associated proteome of rice roots under salt stress.	Proteomics	9(11)	3100-14	2009	RPK1	OsRPK1
51940	0	Gao F., Xiong A., Peng R., Jin X., Xu J., Zhu B., Chen J., Yao Q.	OsNAC52, a rice NAC transcription factor, potentially responds to ABA and confers drought tolerance in transgenic plants	Plant Cell Tissue Organ Cult.	100	255-262	2010	NAC88	ONAC088, ONAC88, OsNAC52, NAC52
51941	35428891	Ito K., Ito D., Goto M., Suzuki S., Masuda S., Iba K., Kusumi K.	Regulation of ppGpp Synthesis and Its Impact on Chloroplast Biogenesis during Early Leaf Development in Rice.	Plant Cell Physiol.	63(7)	919-931	2022	RSH3,RSH3C,RSH3B	OsRSH3,OsRSH3c,OsRSH3b
51942	35512211	Feng-Quan Tan, Wang W., Li J., Lu Y., Zhu B., Hu F., Li Q., Zhao Y., Dao-Xiu Zhou	A coiled-coil protein associates Polycomb Repressive Complex 2 with KNOX/BELL transcription factors to maintain silencing of cell differentiation-promoting genes in the shoot apex.	Plant Cell	34(8)	2969-2988	2022	PACP	OsPACP
51943	35543496	Wang Z., Zhang B., Chen Z., Wu M., Chao D., Wei Q., Xin Y., Li L., Ming Z., Xia J.	Three OsMYB36 members redundantly regulate Casparian strip formation at the root endodermis.	Plant Cell	34(8)	2948-2968	2022	MYB36C,MYB36B,MYB36A	OsMYB36c, Os2R_MYB42, 2R_MYB42,OsMYB36b, Os2R_MYB32, 2R_MYB32,OsMYB36a, Os2R_MYB75, 2R_MYB75
51944	35596715	Gonin M., Jeong K., Coudert Y., Lavarenne J., Giang Thi Hoang, Bes M., Huong Thi Mai To, Marie-Rose Ndella Thiaw, Toan Van Do, Moukouanga D., Soazig Guyomarc'h, Bellande K., Jean-R?my Brossier, Parizot B., Hieu Trang Nguyen, Beeckman T., V?ronique Bergougnoux, Rouster J., Sallaud C., Laplaze L., Champion A., Gantet P.	CROWN ROOTLESS1 binds DNA with a relaxed specificity and activates OsROP and OsbHLH044 genes involved in crown root formation in rice.	Plant J.	111(2)	546-566	2022	BHLH44,ROC4,_,QHB,CRL1,HOX14	OsbHLH044, bHLH044, bHLH44, OsbHLH96, bHLH96, bHLH096,Roc4(t), Roc4, GL2-4, OsROC4, OsGL2-4, OsHDZ16, OsHDZIP16, HDZ16, HDZIP16,OsROP, ROP,OsQHB, OsWOX9, WOX9, WOX5, Os WOX5, OsWOX5, QHB/OsWOX9,crl1, crl1*, ARL1, ARL1/CRL1, OsLBD3-2, LBD3-2, OsCRL1,Oshox14, OsHox14
51945	35665602	Gong L., Liao S., Duan W., Liu Y., Zhu D., Zhou X., Xue B., Chu C., Yun-Kuan Liang	OsCPL3 is involved in brassinosteroid signaling by regulating OsGSK2 stability.	J Integr Plant Biol	64(8)	1560-1574	2022	BIN2,CPL3	GSK2, Os GSK2, OsGSK2, Os BIN2, OsBIN2, BIN2/GSK2, OsSK22/OsGSK7, OsSK22, OsGSK7, SK22, GSK7, OsSK22/GSK2 ,OsCPL3
51946	0	Jui-Che Chang	Studies on Rice Sucrose synthase 1:Sugar-Modulated Gene Expression and Subcellular Localization	Thesis			2011	PURAPLHA	OsPuraplha
51947	35791277	Wang P., Yamaji N., Jian Feng Ma	A Golgi-localized glycosyltransferase, OsGT14;1, is required for growth of both roots and shoots in rice.	Plant J.	111(4)	923-935	2022	SRR1	OsSRR1, OsGT14;1, GT14;1
51948	35836378	Zheng Y., Zhang S., Luo Y., Li F., Tan J., Wang B., Zhao Z., Lin H., Zhang T., Liu J., Liu X., Guo J., Xie X., Chen L., Liu Y.G., Chu Z.	Rice OsUBR7 modulates plant height by regulating histone H2B monoubiquitination and cell proliferation.	Plant Commun	3(6)	100412	2022	H2B.11,_,H2B.10,_,H2B.3,H2B.7,H2B.9,H2B.5,H2B.4,FLO2,CDKB2;1 ,FBOX2,CYCA3;2,GS2,CDKD;1,H2B.2,CDKB;1,UBC18,H2B.1,UBR7,_,TRX29,CYCA2;1	OsH2B.11,OsH2A,OsH2B.10,OsH3,OsH2B.3,OsH2B.7, OsFBO1, FBO1,OsH2B.9,OsH2B.5,OsH2B.4,flo2, flo3(t), Osflo2, Osflo3(t), Osflo-2, flo-2, FLO2-1, FLO2-2,Orysa;CDKB2;1, OsCDKB2;1, cdc2Os3, Oscdc20s-3, cdc20s-3, Orysa;CDKB;2, CYCB2.1, CDKB-2, OsCDKB-2,OsFbox002, OsFbox2, OsH2B.6, H2B.6,OsCYCA3;2, CycA3;2, CycA3;os;2, Orysa;CycA3;2, CYCA2.1, CYCA2;1,OsGS2, GLN2, OsGLN2, RGS31, OsRGS31,CDKD;1, Orysa;CDKD;1, R2, OsR2, CAK R2, CDKD1;3 ,OsH2B.2,CDKB;1, Orysa;CDKB;1, CDKB1;1, Orysa;CDKB1;1, OsCDKB1.1, CDKB1.1, OsCDKB1;1,OsUBC18,OsH2B.1,OsUBR7,H4, OsH4,OsTRX m5, Ostrxm5, OsTRXM5, TRXM5, OsTrxm, OsTrx29, Trx29,CycA2;1, CycA2;os;1, Orysa;CycA2;1, OsCYCA2;1, CYCA2.2
51949	35858424	Huang G., Kilic A., Karady M., Zhang J., Mehra P., Song X., Sturrock C.J., Zhu W., Qin H., Hartman S., Schneider H.M., Bhosale R., Dodd I.C., Sharp R.E., Huang R., Mooney S.J., Liang W., Bennett M.J., Zhang D., Pandey B.K.	Ethylene inhibits rice root elongation in compacted soil via ABA- and auxin-mediated mechanisms.	Proc. Natl. Acad. Sci. U.S.A.	119(30)	e2201072119	2022	COW1,RAU1	OsCOW1, oscow1, OsYUC8, YUC8, NAL7, OsNAL7, OsYUCCA8, YUCCA8, FMO, OsFMO(t), REIN7, YUC8/REIN7,OsLAX1, OsRAU1, OsAUX1, LAX1, AUX1
51950	35845690	Zha M., Zhao Y., Wang Y., Chen B., Tan Z.	Strigolactones and Cytokinin Interaction in Buds in the Control of Rice Tillering.	Front Plant Sci	13	837136	2022	CKX9,IPT3,CKX4,IPT8,CKX1,IPT5,CKX5,IPT4,IPT7,GN1A,FC1	OsCKX9,OsIPT3,OsCKX4, ckx4, OsSCRM, OsSCRM2, SCRM, SCRM2,OsIPT8,OsCKX1,OsIPT5,OsCKX5, ckx5,OsIPT4,OsIPT7,Gn1a, OsCKX2, CKX2, ckx2, Gn1a/OsCKX2, Os CKX2, CKX2/Gn1a,fc1, OsTB1, tb1, OsTB1/FC1, Os TB1, TB1, OsFC1, MP3, OsMP3
51951	35850632	Kumar K., Mandal S.N., Neelam K., de Los Reyes BG.	MicroRNA-mediated host defense mechanisms against pathogens and herbivores in rice: balancing gains from genetic resistance with trade-offs to productivity potential.	BMC Plant Biol.	22(1)	351	2022	MIR530,MIR1432,MIR1871,MIR1873	miR530, Osa-miR530, OsmiR530, osa-MIR530, osa-miR530 osa-miR530-3p, osa-miR530-5p,miR1432, osa-miR1432, osa-miR1432-5p, osa-MIR1432,miR1871, osa-miR1871, osa-MIR1871,miR1873, osa-miR1873, osa-MIR1873
51952	35909735	Chahal L.S., Conner J.A., Ozias-Akins P.	Phylogenetically Distant <i>BABY BOOM</i> Genes From <i>Setaria italica</i> Induce Parthenogenesis in Rice.	Front Plant Sci	13	863908	2022	PLT5,PLT6,PLT3,PLT4	OsPLT5, AP2/EREBP5, AP2/EREBP#005, BBM3, OsBBM3, BBM1, OsBBM1,OsPLT6, AP2/EREBP#118, AP2/EREBP118, BBM1, OsBBM1, OsBBML1, BBML1, OsASGR-BBML1, ASGR-BBML1,OsPLT3, AP2/EREBP#018, AP2/EREBP18, BBM2, OsBBM2,OsPLT4, AP2/EREBP#037, AP2/EREBP37, BBM4, OsBBM4
51953	35909262	Guo R., Zhang Q., Ying Y., Liao W., Liu Y., Whelan J., Chuanzao M., Shou H.	Functional characterization of the three Oryza sativa SPX-MFS proteins in maintaining phosphate homoeostasis.	Plant Cell Environ.			2022		
51954	35892948	Lin M., Yan J., Ali M.M., Wang S., Tian S., Chen F., Lin Z.	Isolation and Functional Characterization of a Green-Tissue Promoter in Japonica Rice (<i>Oryza sativa</i> subsp. <i>Japonica</i>).	Biology (Basel)	11(8)		2022	8GSX7	Os8GSX7
51955	35873492	Muthuramalingam P., Jeyasri R., Selvaraj A., Shin H., Chen J.T., Satish L., Wu Q.S., Ramesh M.	Global Integrated Genomic and Transcriptomic Analyses of MYB Transcription Factor Superfamily in C3 Model Plant <i>Oryza sativa</i> (L.) Unravel Potential Candidates Involved in Abiotic Stress Signaling.	Front Genet	13	946834	2022	MYB102,MYBR17,GAMYBL1,MYB50,GL1A,_	R2R3-MYB, OsMYB102, OsMYB81, MYB81,MYB, OsMYBR17,OsGAMYBL1, OsMYB80, MYB80, Os2R_MYB66, 2R_MYB66,OsMYB50 ,R2R3-MYB, OsGL1A, DLN218, OsDLN218, OsMYB102, MYB102, Os2R_MYB81, 2R_MYB81 ,OsMYB4, Osmyb4, OsMyb4, MYB4, OsMYB55, MYB55, OsMyb8, MYB8, OsMYB13b, MYB13b, OsMYB15, MYB15, Os2R_MYB46, 2R_MYB46
51956	35955593	Rahman M.A., Fennell H., Ullah H.	Receptor for Activated C Kinase1B (OsRACK1B) Impairs Fertility in Rice through NADPH-Dependent H2O2 Signaling Pathway.	Int J Mol Sci	23(15)		2022	RACK1B,CATB,RBOHD	OsWD40-122, WD40-122, OsRACK1B,CatB, CAT-B, OsCatB, OsCATB, OsCAT1B, CAT1B, CAT2, OsCAT2,rbohD, OsrbohD, Os rbohD, OsRbohD, OsNox4, OsRboh4, Rboh4
51957	35887118	Teng Z., Zheng Q., Liu B., Meng S., Zhang J., Ye N.	Moderate Soil Drying-Induced Alternative Splicing Provides a Potential Novel Approach for the Regulation of Grain Filling in Rice Inferior Spikelets.	Int J Mol Sci	23(14)		2022	MIR439F,MIR444B,AGPL2,SSIVA,GBSSII,SSIVB,AGPS2,MIR393B,PHS8	miR439f, osa-MIR439f,miR444b, osa-MIR444b, osa-miR444b, osa-miR444b.1, osa-miR444b.2,OsAGPL2, osagpl2, APL2, OsAPL2, AGPiso, sh2, Sh2, GIF2, GAS1 ,OsSSIVa, SSIV-1, OsSSIV-1,GBSS2, OsGBSSII, OsGBSS2,OsSSIVb, SSIV-2, OsSSIV-2, SSIVb, SSIV-2, SSIV2, OsSSIV2,OsAGPS2a, AGPS2A, AGPS2B, OsAGPS2, osagps2, APS2, APS2a, APS2b, AGPS2a, APGS2b, OsAGPS2b, AGPP, GAS8, OsAPS2, OsAPS2a, OsAPS2b,OsmiR393b, miR393b, osa-MIR393bosa-miR393b osa-miR393b-3p osa-miR393b-5p,ISA1, OsISA1, ISA, OsISA, PHS8/ISA1, OsPHS8, ISA I, OsISA I, ISAI, OsISAI
51958	35817888	Kan M., Fujiwara T., Kamiya T.	Golgi-Localized OsFPN1 is Involved in Co and Ni Transport and Their Detoxification in Rice.	Rice (N Y)	15(1)	36	2022	FPN1	OsFPN1
51959	35853520	Wang Y., Shen C., Jiang Q., Wang Z., Gao C., Wang W.	Seed priming with calcium chloride enhances stress tolerance in rice seedlings.	Plant Sci.	323	111381	2022		
51960	35779169	Liu Q., Ding J., Huang W., Yu H., Wu S., Li W., Mao X., Chen W., Xing J., Li C., Yan S.	OsPP65 Negatively Regulates Osmotic and Salt Stress Responses Through Regulating Phytohormone and Raffinose Family Oligosaccharide Metabolic Pathways in Rice.	Rice (N Y)	15(1)	34	2022	LEA2,LEA3-1,PP2C40,WSI18,LEA1,LOX8,RS2,AGA1,LEA16,LEA3,GOLS1,LEA18,WSI76,DHN6,AOS3,RAB16A,AOS2,AGA3	OsLEA2, OsLEA4, LEA4,OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3, OsLEA3A, LEA3A,OsPP2C40, OsPP65, PP65,OsLEA14, OsLEA14a, OsLEA14b, wsi18, pwsi18, OsWsi18, OsLEA14/WSI18,OsLEA1, OsLEA2, LEA2,OsLOX8, OsLOX9, LOX9, OsLOX2;3, LOX2;3, OsLOX2, OsLOX1, CM-LOX8,OsRS2, OsRS5, RS5,Osh69, h69, OsAGA1, OsRS6, RS6,OsLEA16,OsLEA3, OsEnS-84,OsGolS1, GolS1, OsGolS2, GolS2,OsLEA18,wsi76, OsLEA24/OsGolS2, OsGolS2/OsLEA24, OsLEA24, OsGolS2, GolS2, LEA24, OsGolS1, GolS1, OsGOLS2, GOLS2,OsLEA25, LEA25, OsEnS-143, OsRAB21, RAB21, Rab17, OsRab17,OsAOS3, HPL2, OsHPL2, OsAOS3/OsHPL2,Rab16A, rab21, RAB21, OsRab21, OsRAB21, OsRAB-21, OsRab16A, OsLEA29, rab16A, OsRAB16A,OsAOS2, CYP74A2, OsAOS, OsAOS1,OsAGA3, OsRS4, RS4
51961	35968081	Ge L., Guo H., Li X., Tang M., Guo C., Bao H., Huang L., Yi Y., Cui Y., Chen L.	OsSIDP301, a Member of the DUF1644 Family, Negatively Regulates Salt Stress and grain size in Rice.	Front Plant Sci	13	863233	2022	HAK5,NCED1,HKT4,PRX22,BHLH081,SIDP301,WRKY45,EXPA4,RLCK91,PP2C1,HAK22,CATA,RLCK311,P5CS,ABI5,PP2C9,ND1,PP2C53,SKOR ,PHI1,HAK21,HOX24	OsHAK5, FCO13, OsFCO13,OsNCED1, OsCCD4a, CCD4a,OsHKT4, OsHKT1;1, HKT1;1, OsHKT2, RNC4, OsHKT1;1-FL, OsHKT1;1-V1, OsHKT1;1-V2, OsHKT1;1-V3, OsHKT1;1-V4, OsHKT1;1-V5, OsHKT1;1-V6, OsHKT1;1-V7, OsHKT1;1-V8,prx22, OsPRX22, OsPOD,OsbHLH081, bHLH081, OsBC1, BC1,OsSIDP301,OsWRKY45, OsWRKY45-1, OsWRKY45-2, WRKY45-1, WRKY45-2,OsEXP4 (Os-EXP4), OsEXPA4, OsEXP4, Os-EXP4, OsaEXPa1.22,OsPUB62, PUB62, OsRLCK91,  OsPUB62, PUB62,OsPP2C1, OsSIPP2C1, SIPP2C1, OsPP2C68, PP2C68, OsPP108,OsHAK22,CATA1, Cat A1*, OSCAT-A, Cat2, CatA1, CAT-A, OsCatA, OsCAT, CAT, catA, OSCATA, OsCATc, OsCATA, OsCAT1A, CAT1, OsCAT1, OsCATC, OsCAT2,OsRLCK311,OsP5CS, P5CS1, OsP5CS1, OsALDH18B1, ALDH18B1, OsP5CS-1, P5CS-1,OsABI5, OsbZIP10, OsABF1, OREB1, OsABI5-1, OsABI5-2, OsOREB1, OREB1 ,OsPP15, PP15, OsPP2C09, PP2C09, OsPP2C9, OsPP2C3,CSLD4, OsCSLD4, OsCD1, CD1, DNL3, OsDNL3, NRL1, OsNRL1, SPO1, OsSPO1, SPO1/OsCSLD4,OsPP2C53, OsPP81, OsABIL2, ABIL2,OsSKOR, OsK5.1, K5.1,OsPHI1, OsPHI-1, PHI-1,OsHAK21,Oshox24, OsHox24, OsSLI1, OsHDZ6, OsHDZIP6, HDZ6, HDZIP6
51962	35806382	Kim N., Jan R., Park J.R., Asif S., Zhao D.D., Kim E.G., Jang Y.H., Eom G.H., Lee G.S., Kim K.M.	QTL Mapping and Candidate Gene Analysis for Seed Germination Response to Low Temperature in Rice.	Int J Mol Sci	23(13)		2022		
51963	35955477	Hao Q., Zhang G., Zuo X., He Y., Zeng H.	Cia Zeaxanthin Biosynthesis, <i>OsZEP</i> and <i>OsVDE</i> Regulate Striped Leaves Occurring in Response to Deep Transplanting of Rice.	Int J Mol Sci	23(15)		2022	_,CYP72A18,ABA1,RVDE1,_,_,_,NCED2	GDCi, OsGDCi, OsGAD, GAD, OsGAD4, GAD4,OsCYP72A18,OsABA1, Zep1, OsAba1, Aba2, OsAba2, OsZep1, Zep, OsZep, Aba1, OsABA2, Osaba1, OsZEP-1, OsZEP, OSZEP1, ZEP1, ZEP,OsRVDE1, OsVDE, VDE,AO, OsAO, OsAAO, AAO,OsABA45, ABA45, OsGDP, GDP, OsASR, ASR,OsSDR, SDR,OsNCED2, OsNced2, OsCCD4b, CCD4b, OsCCD4c, CCD4c
51964	35914574	Jung S.E., Kim T.H., Shim J.S., Bang S.W., Bin Yoon H., Oh S.H., Kim Y.S., Oh S.J., Seo J.S., Kim J.K.	Rice NAC17 transcription factor enhances drought tolerance by modulating lignin accumulation.	Plant Sci.	323	111404	2022		
51965	35871691	Chen S., Feng A., Wang C., Zhao J., Feng J., Chen B., Yang J., Wang W., Zhang M., Chen K., Chen W., Su J., Liu B., Zhu X.	Identification and fine-mapping of Xo2, a novel rice bacterial leaf streak resistance gene.	Theor. Appl. Genet.	135(9)	3195-3209	2022	XO2	Xo2, OsXo2
51966	35909718	Li C., Lu C., Zou B., Yang M., Wu G., Wang P., Cheng Q., Wang Y., Zhong Q., Huang S., Huang T., He H., Bian J.	Genome-Wide Association Study Reveals a Genetic Mechanism of salt tolerance Germinability in Rice (<i>Oryza sativa</i> L.).	Front Plant Sci	13	934515	2022	ALKBH8B,HSP26,_	OsALKBH8B,OsHSP26, Oshsp26, OsHSP26.7, HSP26.7,SAP
51967	35879964	Yan Z., Deng R., Zhang H., Li J., Zhu S.	Transcriptome analysis of floret opening and closure both Indica and Japonica rice.	3 Biotech	12(9)	188	2022		
51968	35882853	Jia M., Meng X., Song X., Zhang D., Kou L., Zhang J., Jing Y., Liu G., Liu H., Huang X., Wang Y., Yu H., Li J.	Chilling-induced phosphorylation of ipa1 by OsSAPK6 activates chilling tolerance responses in rice.	Cell Discov	8(1)	71	2022	DREB1C,DREB1B,DREB1A,WFP,SAPK6,CDS1	OsDREB1C, CBF1, ERF26, OsERF026, OsERF#026, OsERF26, AP2/EREBP#098, AP2/EREBP98, OsCBF2, CBF2,OsDREB1B, ERF31, OsERF031, OsERF#031, OsERF31, AP2/EREBP#169, AP2/EREBP169, OsDREB1b, OsDREB1C, OsCBF1, CBF1,OsDREB1A, Os DREB1A, CBF3, OsCBF3, OsDREB1A/OsCBF3, ERF24, OsERF24, OsERF024, OsERF#024, AP2/EREBP#114, AP2/EREBP114, OsDREBL,OsSPL14, SPL14, IPA1, WFP/IPA1, OsSPL14/WFP/IPA1, OsIPA1,  IPA1/OsSPL14,OsSAPK6, OSRK1, OsSnRK2.6, SnRK2.6,OsCNGC15, CNGC15, OsCNGC9, CNGC9, OsCDS1
51969	35821048	Wang R., You X., Zhang C., Fang H., Wang M., Zhang F., Kang H., Xu X., Liu Z., Wang J., Zhao Q., Wang X., Hao Z., He F., Tao H., Wang D., Wang J., Fang L., Qin M., Zhao T., Zhang P., Xing H., Xiao Y., Liu W., Xie Q., Wang G.L., Ning Y.	An ORFeome of rice E3 ubiquitin ligases for global analysis of the ubiquitination interactome.	Genome Biol.	23(1)	154	2022	RLCK93,_,TLP5,_,_,_,_,_,_,_,FBX374,MBTB29,_,PUB24,_,_,BTBN21,_,RHS1,_,RING104,_,_,MBTB6,_,ZTL1,_,_,_,RING424,RING158,_,C3-BTB2,_,_,_,_,_,_,PAL1,_,_,_,H-BTB5,BTBZ1,NLA1,_,_,TTL1,FBDUF9,_,_,_,_,_,_,RING451,_,_,RING243,LARGE2,RING5,_,_,RING446,_,_,_,_,RLCK305,RLCK111,RING199,RING332,RING366,RING336,RING259,ELF1,_,FBDUF6,_,_,RING381,RING162,PUB7,RIP6,_,_,RING84,BTBN19,XBOS36,_,_,DCA1,FBX107,SUB56,_,APO1,WD40-167,_,RING406,_,SRWD3,RING395,_,MBTB19,_,RING138,_,EDA16,_,RING291,RING457,HECT3,_,RING53,RING261,RING43,DIS1,_,_,DLN198,_,DSNP1,ZTL2,_,FBX210,UPL5,_,RING26,PUB1,_,PUB40,_,RFPHC9,_,MRBTB1,RLCK281,PAL1,B4-BTB3,_,_,_,RING209,FBX8,_,_,_,_,_,RING6,RLCK91,_,CCS52B,_,DLN139,_,MBTB16,FBOX291,PUB71,E1-BTB1,_,_,_,_,FBDUF7,_,_,RING257,_,UCIP4,_,MBTB10,_,_,_,_,RING256,C3H15,FBDUF31,_,_,PUB17,MBTB17,RING379,_,_,_,_,_,SERL7,RING18,_,RING191,_,RING459,ZOS10-06,_,RING437,MBTB22,RING416,RAE3,_,MBTB18,MBTB28,BTBN7,MBTB38,_,_,MBTB46,PUB22,MBTB63,DWD74,_,FBDUF28,FBDUF27,FBDUF33,_,FBX102,B4-BTB1,FBX239,BTBN10,BTBN13,BTBN24,_,_,_,FVE,_,RING317,_,RING201,RING233,_,_,_,RING435,RING312,WCR1,RING35,RING357,RING258,_,H-BTB9,_,_,RING468,FBX56,FBX41,FBX122,RING315,RING66,CPT1,_,DLN146,_,BOP1,_,WD40-128,_,_,_,_,RBP10,_,SRWD1,_,_,_,RLCK316,_,_,_,_,BTBP1,_,_,_,_,_,_,_,_,_,RING25,_,_,BTBN9,_,_,_,_,_,_,_,_,_,_,FBX404,TLP7,ANTH15,TLP8,_,_,_,RING388,RING428,RING244,RING81,RING245,_,_,_,_,_,_,RING330,_,BTBN22,_,_,_,_,PUB74,BTBZ3,_,_,_,_,_,_,_,D3,_,RING170,DLN202,_,_,_,_,MBTB49,_,BRT1,MBTB61,RING147,_,_,SPL11,PUB26,PUB35,PUB4,RLCK112,PUB63,PHD29,RALYASE1,_,NBIP1,_,_,_,RF1,_,_,DLN122,RING182,_,_,FBX285,_,_,PUB2,_,RING448,RING181,_,RING16,C2-BTB1,RLCK280,_,_,RING190,_,_,_,_,_,_,RING392,_,_,_,_,_,_,_,RING246,_,_,FBDUF29,_,_,_,_,_,_,PUB19,_,BBF1,DRW1,NCA1A,_,BTBN15,RDCP1,HIRP1,_,_,_,RING40,_,TLP10,RING189,FBX403,_,_,RING400,PUB9,_,RING308,_,_,NCA1B,AM29,H-BTB8,NH2,_,RING402,_,_,FBL11,EL5,RING51,_,BTBN8,RING454,RING19,_,_,_,PAL,PUB37,_,_,_,MBTB31,_,RFPHC14,FBDUF47,BTB8,_,PAGN1,_,_,_,_,EBR1,LE,_,_,PUB32,_,_,PUB8,PUB66,PPS,RING86,_,_,_,PUB18,_,H-BTB7,_,_,_,RING254,RING340,RING396,_,_,_,MBTB32,_,_,MAL,_,PUB43,_,_,_,RING440,_,H-BTB6,NPY2 ,_,_,_,_,_,_,RING203,_,RING143,_,_,BTBN5,WD40-169,C3-BTB1,_,_,FBX71,FBOX6,_,RING305,_,_,_,VIP2,_,_,_,_,MBTB66,RLCK194,_,_,TAD1,_,MBTB23,_,_,_,RING260,PUB58,_,_,UPL7,RING409,_,_,RING407,_,_,_,_,RING187,_,_,_,_,_,_,_,_,_,RING314,RING56,RING338,_,_,_,_,RING94,_,PUB25,TLP6,_,RING462,RING410,RING248,_,MBTB26,_,PUB60,_,MBTB30,RING249,_,_,ATL32,_,MBTB68,_,RING167,RING476,_,RING60,_,_,_,RING326,_,RLCK307,RING168,SCD1,MBTB67,_,RING188,_,RING390,_,_,_,RING33,RING439,RING394,RING41,BTBN23,_,BTBN4,UPL4,_,_,RING401,_,RINGZF1,SAF,RING42,_,_,_,_,RING420,_,RING211,_,_,CYP714C3,_,RING372,RING24,RFPHC-1,RING425,RING415,_,_,_,_,RING475,_,BT,FBX335,RING65,_,_,_,_,CDC20.1,_,_,_,RING142,WD40-109,_,_,_,FBX166,RING139,_,_,UPL1,_,TLP2,_,RGB1,_,MRBTB2,RDCP3,FBX305,_,_,RING311,_,_,MRBTB4,RING137,RFPV1,RING22,_,PUB3,_,_,FBOX349,_,_,RLCK69,_,FBX85,BOP2,_,RING411,RING380,_,RING418,_,_,MBTB65,BTBN20,RING141,_,RING48,RING461,_,_,PUB46,RING124,H-BTB1,HIP1,_,SIP13 ,DLN204,_,RING132,RING328,FBX279,PUB39,_,_,MSI1,_,_,E1-BTB2,PUB12,RING69,RING67,_,_,PIE1,_,PHD43,_,UPL3,_,PUB38,_,RING422,RING13,RING464,RING383,_,_,PUB36,PUB45,_,RING265,FBX115,RFPHC-2,RING419,SOR1,RING313,HRZ2,_,_,_,PUB64,_,_,_,RING127,RING126,RING125,_,_,_,_,RING293,FBX503,_,RING55,RING421,FBD4,_,_,_,_,_,_,RING414,RING403,_,_,_,MBTB37,RING324,FBX116,_,RING369,_,_,_,_,RING355,_,_,FBT8,CHR731,_,_,_,_,RING302,_,FBX474,WLG,_,RING303,RING333,RING294,RING458,_,_,_,_,RING301,_,RING30,PUB41,RING299,DLN108,_,_,RING295,_,ATL17,RING226,RING297,RING298,_,MBTB62,_,_,_,_,_,_,_,_,RING7,_,RING281,_,_,_,RING193,RING178,_,_,_,FBX42,_,RING370,MBTB44,_,RDCP4,_,FBOX394,RING20,_,RING192,RING97,_,_,_,PUB13,_,TIR1,_,_,_,RING262,BTB4,RING228,_,RING29,FKF1,H-BTB4,_,FBX256,PUB21,FBX465,FBOX33,RING292,PUB34,COI1,_,_,_,BTBN16,_,_,_,_,_,_,_,CHR735,_,_,RING250,RING267,_,FBOX316,RING173,DLN35,RING289,_,_,_,_,_,_,RING286,_,_,BTB5,_,_,_,_,_,_,_,SRWD5,_,FBX268,_,RING360,_,RING368,MBTB40,_,_,_,_,_,RING356,SADR1,PMR,RFI2,RING111,_,_,RING184,ZF,_,TLP12,HRZ1,_,_,_,RING106,RING109,_,RING54,FIE2,BTBN12,_,_,_,_,RING49,HUB2,_,_,RING88,_,TLP14,RING363,PUB33,_,_,RING449,_,_,RING444,RING288,_,_,_,_,_,UPL6,_,BTBN11,_,BTB9,_,BTB7,_,_,BTBM1,_,RING287,BTBN1,ZFP1 ,_,RING89,RING236,RING473,_,_,_,RING364,RING225,_,_,RING237,_,FBOX130,RING274,MBTB4,RING465,RING234,_,RING23,RING227,RING207,RING96,_,PUB15,_,RING110,_,RLCK81,APIP10,PUB30,WD40-24,_,_,RING216,PUB31,RING156,RING221,_,RING352,RING174,RING183,_,RING371,_,RING220,RING224,RING208,_,_,_,_,WD40-14,FBDUF25,C3H41,RING4,ATL69,PUB28,_,_,PUB44,HTAS,RING21,RFPH2-15,FBL18,FBOX206,_,RING93,WIN1,_,_,DLN200,_,MBTB42,RING241,_,_,RING238,_,_,RING452,_,RING27,RING58,_,RING10,_,RING251,RING83,_,_,_,RING471,_,BTBN17,RFPV6,_,_,_,_,GL3.5,_,APIP6,_,_,WD40-194,RING95,_,RING92,WD40-171,_,RING204,_,_,FBX471,_,BTB3,_,_,SLG2,_,_,FBX25,_,_,PUB76,FBX393,_,_,RLCK197,RING107,_,_,_,_,RING450,FBOX72,_,RING202,PUB72,_,_,_,_,_,RING59,RDCP2,_,_,_,PTB1,_,FBX321,_,_,AAP7B,_,TLP3,_,RING108,_,_,_,_,RING122,_,_,_,_,FBX200,ATL101,RING120,PUB73,RING11,RING121,RING112,RING113,RING100,RING118,RING119,RING115,RING117,_,_,RLCK207,BIRF1,_,HEI10,FBX236,RING61,SRWD4,BTB2,_,_,_,_,RING101,_,PUB6,_,FBOX11,_,_,RING52,FBX467,RING148,_,_,FBX218,B4-BTB4,_,MRBTB3,_,FBX199,PUB29,_,RING438,XB3,RING342,FBO19,_,_,_,_,_,_,_,_,_,RING44,_,DHS,RING140,_,RING339,RING266,RING436,_,_,RING472,SIP14,_,BTBN3,_,H2B.7,PUB67,FBX100,RING349,_,_,_,_,_,B4-BTB2,_,_,_,RMT1,_,_,H-BTB2,PUB77,_,RING337,RDCP5,PUB42,_,RING447,_,_,RING197,_,_,_,RING309,_,_,ABB1,SIRP4,RING196,_,_,TLP1,PUB5,_,_,RING116,RING70,HCI1,_,FBDUF14,_,_,RING463,_,MBTB5,RING300,_,_,A3-BTB1,_,_,ABTB1,_,RING351,_,_,TLP11,_,_,_,_,_,RING194,RING367,_,_,RING57,_,_,_,_,_,TLP13,DLN24,FBOX58,GW2,_,_,RING263,NH1,_,RING335,_,_,_,SRFP1,_,_,_,FBX244,_,_,MEL,_,_,_,_,_,_,_,_,_,FBOX396,_,_,PUB68,_,_,_,RLCK285,RING453,_,PUB20,RING264,_,RING253,RING455,_,_,DLN109,_,_,FBX428,_,RING85,_,_,_,_,_,_,_,_,_,A3-BTB2,_,PUB10,DLN56,_,_,_,RING153,RLCK306,_,_,_,_,_,_,_,_,EP3,FBOX314,FBOX516,RING171,_,DLN115,_,_,RING63,RING470,_,_,_,_,_,_,MRBTB5,_,RING212,_,_,_,FBX287,_,PUB14,_,_,NH3,RING195,RFP1,_,_,_,ALT1,_,_,_,RFPH2-9,_,_,_,_,LC4,_,_,DSG1,RING359,_,CHR724,_,MBTB25,RING466,_,_,_,_,RING353,_,_,FBX415,_,_,PUB23,_,FBX442,_,PUB16,_,MEL2,_,RING397,MBTB50,_,_,PUB65,_,RING467,RING72,_,FBX189,_,_,_,RING469,H-BTB3,RING280,RING71,BRCA1,_,PUB69,BOP3,_,CHR715,_,_,RING74,_,_,COI1B,_,_,RING62,FBD17,_,BTBZ4,AIR2,_,TLP9,SIP33,_,RFPH2-8	OsPUB50, PUB50, OsRLCK93,OsFbox290, Os_F0343,  OsFBX184, FBX184,OsTLP8, LP8, OsTLP8a, OsTLP8b, OsTLP8c, OsTLP8d, OsTLP5, OsFbox107, Os_F0446,  OsFBT4, FBT4,OsFbox586, Os_F0088, Fbox-13,  OsFBX411, FBX411,OsFbox305, Os_F0041,  OsFBX193, FBX193,OsFbox176, Os_F0077,  OsFBDUF18, FBDUF18,OsFbox606, Os_F0155,  OsFBX423, FBX423,OsWD40-108,  OsDWD61, DWD61,OsFbox152, Os_F0251,  OsFBX95, FBX95,OsWD40-116, OseIF3i, eIF3i, EIF3I,  OsDWD52, DWD52,OsFBX374,OsMBTB29,OsFbox557, Fbox557, Os_F0256,  OsFBX389, FBX389,OsPUB24,OsMB23, MB23,  OsMBTB48, MBTB48,OsFbox310, Os_F0057,  OsFBD12, FBD12,OsBTBN21,OsWD40-13,  OsDWD62, DWD62,OsRHS1, OsPUB27, PUB27,OsRFPHC-4,  OsRING205, RING205,OsRING104, OsvWA7, vWA7,OsWD40-82,  OsDWD19, DWD19,OsFbox013, OsFbox13, Os_F0590, OsFBX10,  OsFBX10, FBX10,OsMBTB6,OsFbox245, Os_F0037,  OsFBX157, FBX157,OsZTL1, OsFbox066, OsFbox66, Os_F0484, OsLKP2, LKP2,  OsFBO8, FBO8,OsFbox426, Os_F0184,  OsFBX276, FBX276,OsFbox261, Os_F0604,  OsFBL24, FBL24,OsFbox137, Os_F0544,  OsFBX82, FBX82,OsRING424,SDEL1, OsSDEL1, OsRING158,OsFbox641, Os_F0319,  OsFBO23, FBO23,OsC3-BTB2,OsFbox132, Os_F0228,  OsFBX78, FBX78,OsFbox342, Os_F0418,  OsFBL35, FBL35,OsRFPV-5,  OsRING235, RING235,OsWD40-83, WD40-83, OsCDT2, CDT2,  OsDWD58, DWD58,OsFbox469, Os_F0272,  OsFBX309, FBX309,OsMB52, MB52,  OsMBTB64, MBTB64,OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6,OsFbox492, Os_F0175,  OsFBX331, FBX331,,  OsRING389, RING389,OsRFPH2-23,  OsRING146, RING146,OsH-BTB5,OsBTBZ1,OsRFPHC-13, OsNLA, NLA, OsNLA1, OsNLA1.1, OsNLA1.2, OsNLA1.3,  OsRING269, RING269,OsRFP ,  OsRING384, RING384,OsFbox447, Os_F0225,  OsFBX293, FBX293,OsRFPV-7, RFPV-7, OsRFPV7, RFPV7, OsRING200, RING200, OsTTL1,OsFBDUF9,OsFbox118, Os_F0460,  OsFBX68, FBX68,  OsFBX69, FBX69,Os_F0668,  OsFBX504, FBX504,OsFbox445, Os_F0550,  OsFBX479, FBX479,OsFbox594, Os_F0295, Fbox-1,  OsFBX419, FBX419,OsFbox222, Os_F0047,  OsFBX144, FBX144,OsSTA133,  OsMBTB8, MBTB8,OsRING451,OsFbox674, Os_F0164,  OsFBX462, FBX462,OsMB40, MB40,  OsMBTB33, MBTB33,OsRING243,OsLARGE2, OsUPL2, UPL2,  OsHECT8, HECT8,OsRING5,OsRFP ,  OsRING276, RING276,JMJ710, OsFbox611, Os_F0574,  OsFBO15, FBO15,OsRING446,OsHUB1, HUB1, SIP20,  OsRING377, RING377,OsFbox540, Os_F0468,  OsFBX376, FBX376,OsFbox656,  OsFBX448, FBX448,OsFbox425, Os_F0168,  OsFBX275, FBX275,OsPUB53, PUB53, OsRLCK305, OsMed2_1, Med2_1 ,  OsPUB53, PUB53,OsPUB59, PUB59, OsRLCK111,  OsPUB59, PUB59,OsRING199,OsRING332,OsRING366,OsRING336,OsRING259,OsPUB31, PUB31, OsPUB75, PUB75, TUD1, OsTUD1, DSG1,  OsPUB75, PUB75,OsFbox551, Os_F0073,  OsFBX385, FBX385,OsFBDUF6,OsFbox127, Os_F0532,  OsFBX76, FBX76,OsRFPH2-22,  OsRING38, RING38,OsRING381,OsRING162,OsPUB7, OsPUB07, PUB07,OsRIP6,  OsRING78, RING78,OsFbox001, OsFbox1, Os_F0615, OsFBX1,  OsFBX1, FBX1,Os_F0659,  OsFBDUF26, FBDUF26,OsRING84, OsvWA20, vWA20, OsRGLG5, RGLG5,OsBTBN19,OsXBOS36,  OsRING3, RING3,OsFbox430, Os_F0456,  OsFBX280, FBX280,OsFbox555, Os_F0152,  OsFBX387, FBX387,OsDCA1, DST1, OsDST1,  OsRING161, RING161,OsFBX107,OsSub56,  OsRING474, RING474,JMJ720,  OsRING445, RING445,apo1(t), apo1, SCM2, SCM2/APO1, OsFbox321, Os_F0393, Pbl6/APO1, Pbl6, OsPbl6,  OsFBX202, FBX202,OsWD40-167, CDC20.3, OsCDC20.3,  OsCDC20-1, CDC20-1,OsFbox597, Os_F0447,  OsFBX420, FBX420,OsRING406,OsFbox453, Os_F0339,  OsFBD14, FBD14,SRWD3, OsWD40-126,  OsDWD54, DWD54,OsRING395,OsWD40-110, OsFbox233, Os_F0069,  OsFBW1, FBW1,OsMBTB19,OsMB6, MB6,  OsMBTB7, MBTB7,OsRING138, OsvWA24, vWA24,OsFbox572, Os_F0135,  OsFBX398, FBX398,BRHIS1, Os BRHIS1, OsEDA16, CHR725, OsCHR725,  OsRING433, RING433,OsFbox532, Os_F0058,  OsFBX368, FBX368,OsRING291, E3BB, OsE3BB, BB, OsBB, E3BB, OsE3BB,OsRING457,OsHECT3,OsFbox210,  OsFBX134, FBX134,OsRING53,OsRING261,OsRING43,OsDIS1, RIP5, OsRIP5,  OsRING80, RING80,OsFbox454, Os_F0207,  OsFBL51, FBL51,OsFbox004, OsFbox4, Os_F0387,  OsFBDUF1, FBDUF1,OsRFP, OsDLN198, OsPHD30, PHD30,  OsRING82, RING82,OsKMD1, OsFbox074, OsFbox74, Os_F0323,  OsFBK4, FBK4,OsCLR1, CLR1, OsDSNP1,  OsRING318, RING318,OsZTL2, OsFbox325, Os_F0374, ZTL1 ,  OsFBO9, FBO9,OsFbox207, Os_F0611,  OsFBLD2, FBLD2,OsFBX210,OsHECT7, HECT7, OsUPL5,OsMB39, MB39,  OsMBTB57, MBTB57,OsRING26,OsPUB1, OsPUB01, OsUFD2,  OsPUB1, PUB1,OsRFPV-4,  OsRING136, RING136,OsPUB40,  OsPUB40, PUB40,OsMB45, MB45,  OsMBTB58, MBTB58,OsRFPHC-9, RFPHC-9, RIP4, OsRIP4,  OsRING75, RING75,Os_F0794, OsFBDUF48, FBDUF48, PEG3,  OsFBDUF48, FBDUF48,OsMrBTB1,OsPUB56, PUB56, OsRLCK281, OsUSP34, USP34,  OsPUB56, PUB56,OsPAL, Pal1*, Pal1, PAL, Pal_1, PalI, PAL2, OsPAL01, PAL01, OSPAL, CP-1, GP-1, OsPAL1, PAL3, OsPAL3,OsB4-BTB3,OsSTA5,  OsRING37, RING37,OsFbox422, Os_F0246,  OsFBX273, FBX273,OsFbox488, Os_F0562,  OsFBX329, FBX329,OsRING209, OsvWA29, vWA29,OsFBX8,OsFbox323, Os_F0105,  OsFBX204, FBX204,OsFbox086, OsFbox86, Os_F0482,  OsFBX48, FBX48,Os_F0297,  OsFBX495, FBX495,OsFbox242, Os_F0706,  OsFBX156, FBX156,Os_F0571,  OsFBX494, FBX494,OsRING6,OsPUB62, PUB62, OsRLCK91,  OsPUB62, PUB62,OsMB33, MB33,  OsMBTB36, MBTB36,OsWD40-33, WD40-33, OsCCS52B,  OsCCS52B, CCS52B, OsCDH1B, CDH1B,OsFbox508, Os_F0127,  OsFBX344, FBX344,OsDLN139,  OsRING386, RING386,OsWD40-159, Cen8.t00757, OseIF3i, eIF3i, EIF3I,  OsDWD53, DWD53,OsMBTB16,OsFbox291, Os_F0516,  OsFBX185, FBX185,OsWD40-9, OsPUB71,  OsPUB71, PUB71,OsE1-BTB1,OsFbox621, Os_F0621,  OsFBDUF59, FBDUF59,OsPAL05, PAL05, OsPAL3, PAL5, PAL3, OsPAL2;3, PAL2;3, OsPAL2-1, PAL2-1,OsFbox161, Os_F0076,  OsFBX101, FBX101,OsFbox113, Os_F0234,  OsFBX63, FBX63,OsFBDUF7,OsFbox244, Os_F0497,  OsFBDUF23, FBDUF23,OsMB10, MB10, OsMB10a, OsMB10b,  OsMBTB13, MBTB13,OsRING257,OsFbox049, OsFbox49, Os_F0364,  OsFBL5, FBL5,OsUCIP4,  OsRING14, RING14,OsFbox254, Os_F0290,  OsFBDUF24, FBDUF24,OsMBTB10,OsFbox048, OsFbox48, Os_F0202,  OsFBX30, FBX30,OsFbox595, Os_F0194,  OsFBL54, FBL54,OsFbox655, Os_F0116,  OsFBD15, FBD15,OsWD40-135,  OsDWD48, DWD48,OsRING256,OsC3H15, OsRFPHC-3,  OsRING268, RING268,OsFBDUF31,OsFbox338, Os_F0537,  OsFBX214, FBX214,OsFbox060, OsFbox60, Os_F0125,  OsFBK2, FBK2,OsPUB17,  OsPUB17, PUB17,OsMBTB17,OsRING379,Os_F0698,  OsFBX461, FBX461,OsFbox667, Os_F0594,  OsFBD16, FBD16,OsFbox036, OsFbox36, Os_F0051,  OsFBX23, FBX23,OsRFPH2-19,  OsRING373, RING373,OsFbox418, Os_F0453,  OsFBX269, FBX269,OsWD40-138, OsSERL7,  OsDWD29, DWD29,OsRING18,OsWD40-86, WD40-86, OsWDR5a, WDR5a, OsWDR5, WDR5,  OsDWD41, DWD41,OsRING191,OsFbox138, Os_F0340,  OsFBX83, FBX83,OsRING459,OsZOS10-06, OsRFP, OsRING134, RING134, OsHAKAI, HAKAI,OsFbox030, OsFbox30, Os_F0577,  OsFBX19, FBX19,OsRING437,OsMBTB22,OsRING416, OsvWA30, vWA30,OsRING273, RING273, OsRAE3,OsFbox610, Os_F0557,  OsFBDUF50, FBDUF50,OsMBTB18,OsMBTB28,OsBTBN7,OsMBTB38,OsFbox510, Os_F0210,  OsFBX346, FBX346,OsFbox633, Os_F0413,  OsFBX433, FBX433,OsMBTB46,OsPUB22,  OsPUB22, PUB22,OsMBTB63,OsDWD74,OsWD40-20,  OsDWD67, DWD67,OsFBDUF28,OsFBDUF27,OsFBDUF33,BTBN18,  OsBTBN18, BTBN18,OsFBX102,OsB4-BTB1,OsFBX239,OsBTBN10,OsBTBN13,OsBTBN24,OsWD40-146,  OsDWD14, DWD14,OsRFPH2-12,  OsRING176, RING176,OsFbox669, Os_F0383,  OsFBX456, FBX456,OsWD40-23, WD40-23, OsFVE,  OsDWD5, DWD5,OsFbox461, Os_F0025,  OsFBX301, FBX301,OsRFP,  OsRING317, OsvWA14, vWA14,OsFbox616, Os_F0314,  OsFBDUF54, FBDUF54,OsRING201,OsRING233,OsFbox385, Os_F0148,  OsFBX248, FBX248,OsFbox164, Os_F0040,  OsFBX104, FBX104,OsRFP ,  OsRING232, RING232,OsRING435,OsRING312,OsFbox052, OsFbox52, Os_F0755, OsWCR1,  OsFBO2, FBO2,OsRING35,OsRING357,OsRING258,OsFbox200, Os_F0645,  OsFBDUF21, FBDUF21,OsH-BTB9,OsFbox117, Os_F0679,  OsFBX67, FBX67,OsFbox443, Os_F0084, OsSTA212,  OsFBX290, FBX290,OsRING468,OsFBX56,OsFBX41,OsFBX122,OsRING315,OsRING66,cpt1,  OsBTBN2, BTBN2,OsETOL2,  OsBTBT2, BTBT2,OsRFP, OsDLN146,  OsRING180, RING180,OsMB38, MB38, DLN236, OsDLN236,  OsMBTB55, MBTB55,OsNPR5, NPR5, NH4, OsNH4, OsBOP1,  OsBTBA3, BTBA3,OsWD40-170,  OsDWD16, DWD16,OsWD40-128,  OsDWD18, DWD18, OsEDC4, EDC4,OsWD40-11,  OsDWD22, DWD22,OsWD40-144, WD40-144, OsWDR5b, WDR5b,  OsDWD28, DWD28,OsFbox543, Os_F0162,  OsFBX379, FBX379,OsWD40-141,  OsDWD40, DWD40,OsRBP10, RBP-10, OsRBP-10,  OsDWD42, DWD42,OsWD40-200,  OsDWD50, DWD50,SRWD1, OsWD40-162,  OsDWD57, DWD57,OsWD40-57,  OsDWD65, DWD65,OsFbox366, Os_F0784,  OsFBLD7, FBLD7,OsWD40-133,  OsDWD71, DWD71,OsWD40-186, OsRLCK316,  OsDWD70, DWD70,OsFbox489, Os_F0053,  OsFBA3, FBA3,OsMB42, MB42,  OsMBTB53, MBTB53,OsFbox057, OsFbox57, Os_F0570,  OsFBDUF11, FBDUF11,MAIF1, OsFbox104, Os_F0528,  OsFBDUF13, FBDUF13,OsBTBP1,OsFbox298, Os_F0486,  OsFBL28, FBL28,OsFbox370, Os_F0625,  OsFBDUF37, FBDUF37,Os_F0671,  OsFBDUF43, FBDUF43,OsFbox559, Os_F0572,  OsFBDUF49, FBDUF49,OsMB16, MB16,  OsMBTB21, MBTB21,OsFbox618, Os_F0583,  OsFBDUF56, FBDUF56,OsWD40-5,  OsDWD13, DWD13,OsFbox622, Os_F0499,  OsFBDUF60, FBDUF60,OsFbox043, OsFbox43, Os_F0563,  OsFBDUF8, FBDUF8,OsRING25,OsFbox326, Os_F0327,  OsFBDUF35, FBDUF35,OsMB19, MB19,  OsMBTB20, MBTB20,OsBTBN9,OsFbox195, Os_F0144,  OsFBL12, FBL12,OsFbox331, Os_F0273,  OsFBL32, FBL32,OsFbox416, Os_F0464,  OsFBL42, FBL42,OsFbox417, Os_F0682,  OsFBL43, FBL43,OsFbox437, Os_F0277,  OsFBL46, FBL46,OsFbox449, Os_F0345,  OsFBL48, FBL48,OsFbox635, Os_F0310,  OsFBL58, FBL58,OsFbox093, OsFbox93, Os_F0270,  OsFBD7, FBD7,OsFbox661, Os_F0665,  OsFBL61, FBL61,OsFbox441, Os_F0010,  OsFBX288, FBX288,OsFBX404,OsTLP3, TLP3, OsTLP7, OsFbox240, Os_F0401,  OsFBT6, FBT6,OsANTH15,  OsFBO21, FBO21,OsTLP1, OsTLP1a, OsTLP1b, OsTLP1c, OsTLP8, OsFbox259, Os_F0415,  OsFBT7, FBT7,OsAIR1, AIR1,  OsRING172, RING172,OsFbox171, Os_F0153,  OsFBX108, FBX108,OsFbox014, OsFbox14, Os_F0467, OsFBX11,  OsFBX11, FBX11,OsRING388,OsRING428,OsRING244,OsRING81,OsRING245,OsFbox614, Os_F0381,  OsFBDUF53, FBDUF53,Os_F0739, OsFBX2,  OsFBX2, FBX2,OsFbox032, OsFbox32, Os_F0271,  OsFBX21, FBX21,OsFbox214, Os_F0430,  OsFBX137, FBX137,OsMB34, MB34,  OsMBTB56, MBTB56,OsFbox380, Os_F0423,  OsFBX243, FBX243,OsRING330,OsFbox393, Os_F0462,  OsFBX254, FBX254,OsBTBN22,OsFbox410, Os_F0192,  OsFBX264, FBX264,OsFbox455, Os_F0173,  OsFBX295, FBX295,OsFbox483, Os_F0233,  OsFBX324, FBX324,OsFbox484, Os_F0373,  OsFBX325, FBX325,OsPUB74,  OsPUB74, PUB74,OsBTBZ3,OsFbox494, Os_F0637,  OsFBX333, FBX333,OsFbox497, Os_F0433,  OsFBX336, FBX336,OsFbox438, Os_F0427,  OsFBL47, FBL47,OsFbox432, Os_F0694,  OsFBL45, FBL45,OsFbox173, Os_F0094,  OsFBX110, FBX110,OsFbox541, Os_F0409,  OsFBX377, FBX377,OsFbox544, Os_F0652,  OsFBX380, FBX380,d3, dwf3, D3/OsMAX2, Os_F0760, SOL1, OsORE9, ORE9, MAX2, OsRFPH2-10, RFPH2-10, OsD3,  OsFBL27, FBL27,OsRFPHC-11,  OsRING376, RING376,OsRING170,OsDLN202,  OsRING17, RING17,OsFbox169, Os_F0378,  OsFBDUF16, FBDUF16,OsPAL02, PAL02, OsPAL5, PAL5, OsPAL2. PAL2, OsPAL1,OsFbox080, OsFbox80, Os_F0533,  OsFBX44, FBX44,OsFbox671, Os_F0524,  OsFBX457, FBX457,OsMBTB49,OsFbox536, Os_F0201,  OsFBX372, FBX372,OsFbox189, Os_F0133,  OsFBX125, FBX125, OsBRT1,OsMBTB61,OsRING147,OsFbox135, Os_F0341,  OsFBX81, FBX81,OsFbox145, Os_F0026,  OsFBX90, FBX90,spl11, spl11*, OsPUB11, PUB11,  OsPUB11/SPL11, PUB11/SPL11,OsPUB26,  OsPUB26, PUB26,OsPUB35,  OsPUB35, PUB35,OsPUB4, OsPUB04,  OsPUB4, PUB4,OsPUB57, PUB57, OsRLCK112,  OsPUB57, PUB57,OsPUB63,  OsPUB63, PUB63,OsRFP, OsPHD29,  OsRING12, RING12,OsRALyase1, RALyase1,  OsFBX17, FBX17,OsRFP ,  OsRING374, RING374,OsNBIP1,  OsRING163, RING163,OsRFPH2-18,  OsRING175, RING175,OsRFPHC-15,  OsRING186, RING186,OsRFP,  OsRING229, RING229,OsRF1,  OsRING279, RING279,OsRFPHC-16,  OsRING322, RING322,XBOS35,  OsRING350, RING350,OsDLN122,  OsRING423, RING423,OsRING182, OsvWA31, vWA31,OsRFP, RLIM, OsRLIM,  OsRING399, RING399,OsFbox368, Os_F0425,  OsFBDUF36, FBDUF36,OsFBX285,OsFbox498, Os_F0145,  OsFBX337, FBX337,OsFbox602, Os_F0512,  OsFBX421, FBX421,OsPUB2, OsPUB02,  OsPUB2, PUB2,OsFbox505, Os_F0638,  OsFBX342, FBX342,OsRING448,OsRING181,OsFbox568, Os_F0335,  OsFBX396, FBX396,OsRING16,OsC2-BTB1,OsPUB52, PUB52, OsRLCK280, OsUSP33, USP33,  OsPUB52, PUB52,OsFbox359, Os_F0431,  OsFBX231, FBX231,OsFbox344, Os_F0183,  OsFBLD3, FBLD3,OsRING190,OsETOL3,  OsBTBT3, BTBT3,OsFbox588, Os_F0365, Fbox-10,  OsFBX413, FBX413,Os_F0240,  OsFBX468, FBX468,OsFbox620, Os_F0358,  OsFBDUF58, FBDUF58,OsFbox401, Os_F0042,  OsFBDUF39, FBDUF39,OsRFPHC-5, RFPHC-5,  OsRING404, RING404,OsRING392,OsFbox125, Os_F0403,  OsFBX75, FBX75,OsFbox099, OsFbox99, Os_F0180,  OsFBX466, FBX466,OsFbox676, Os_F0269,  OsFBX463, FBX463,OsFbox677, Os_F0195,  OsFBX464, FBX464,XBOS32,  OsRING345, RING345,OsRFPH2-14,  OsRING130, RING130,OsFbox158, Os_F0008,  OsFBX98, FBX98,OsRING246,OsFbox258, Os_F0658,  OsFBL22, FBL22,OsFbox328, Os_F0254,  OsFBX207, FBX207,OsFBDUF29,OsRFPH2-20,  OsRING144, RING144,OsFbox182, Os_F0223, F-box118,  OsFBX118, FBX118,OsFbox404, Os_F0566,  OsFBDUF40, FBDUF40,Os_F0488,  OsFBX496, FBX496,OsFbox155, Os_F0503,  OsFBX96, FBX96,XBOS34,  OsRING270, RING270,OsPUB19,  OsPUB19, PUB19,OsFbox313, Os_F0104,  OsFBX198, FBX198,OsBBF1,OsWD40-166, WD40-166, OsDRW1,  OsDWD47, DWD47,OsCOIN, COIN, OsNCA1a, NCA1a,  OsRING1, RING1,OsFbox322, Os_F0520,  OsFBX203, FBX203,OsBTBN15,OsRDCP1,  OsRING320, RING320, OsREIW1, REIW1,OsRFP, OsHIRP1, DLN82, OsDLN82, OsPHD14, PHD14,  OsRING365, RING365,Os_F0451,  OsFBX286, FBX286,OsPAL04, PAL04, PAL, OsPAL7, PAL7,OsFbox662, Os_F0567,  OsFBX451, FBX451,OsRING40,OsFbox299, Os_F0015,  OsFBX188, FBX188,OsTLP11, TLP11, OsTLP10, OsFbox278, Os_F0631,  OsFBT10, FBT10,OsRING189,OsFBX403,,  OsRING331, RING331,OsFbox666, Os_F0411,  OsFBX455, FBX455,OsRING400,OsPUB9, OsPUB09,  OsPUB9, PUB9,Os_F0007,  OsFBX498, FBX498,OsRING308,OsFbox619, Os_F0190, OsSTA265,  OsFBDUF57, FBDUF57,OsbHLH088,  OsFBO13, FBO13,OsNCA1b, NCA1b,  OsRING2, RING2,AM29,  OsRING405, RING405,OsH-BTB8,OsNH2, OsNPR2, NPR2, OsNPR2/NH2, DLN21, OsDLN21, PR2, OsNPR1, NPR1,  OsBTBA2, BTBA2, OsNPR3, NPR3,OsFbox604, Os_F0232,  OsFBX422, FBX422,OsRING402,OsFbox131, Os_F0292,  OsFBX77, FBX77,OsFbox297, Os_F0442,  OsFBX187, FBX187,OsFBL11,EL5.1, EL5.2, EL5.3, EL5.4, EL5.5, EL5.6,  OsRING64, RING64,OsRING51,OsFbox028, OsFbox28, Os_F0158,  OsFBL2, FBL2,OsBTBN8,OsRING454,OsRING19,OsFbox178, Os_F0705,  OsFBX113, FBX113,OsWD40-140,  OsDWD37, DWD37,OsMB22, MB22,  OsMBTB51, MBTB51,OsPAL, OsPAL08, PAL2, GP-28, GP28, PAL08, OsPAL2, OsPAL8, PAL8,OsPUB37,  OsPUB37, PUB37,OsRFPH2-7,  OsRING296, RING296,OsFbox383, Os_F0702,  OsFBX246, FBX246,OsFbox257, Os_F0400,  OsFBX167, FBX167,OsMBTB31,OsFbox493, Os_F0049,  OsFBX332, FBX332,OsRFPHC-14, RFPHC-14, OsSTA9, RIP3, OsRIP3,  OsRING79, RING79,OsFBDUF47,OsBTB8,OsRFPH2-11, OsHIR1,  OsRING123, RING123,OsPAGN1,  OsRING290, RING290,OsFbox220, Os_F0518,  OsFBX142, FBX142,OsRFP ,  OsRING31, RING31,OsFbox312, Os_F0546,  OsFBX476, FBX476,OsFbox031, OsFbox31, Os_F0326,  OsFBX20, FBX20,OsRFP, RFP, OsEBR1,  OsRING398, RING398,OsRHC1, RHC1, OsLE, TT3.1, OsTT3.1,  OsRING133, RING133, DGS1, OsDGS1,OsFbox304, Os_F0494,  OsFBX192, FBX192,OsFbox501, Os_F0050,  OsFBX340, FBX340,OsPUB32,  OsPUB32, PUB32,OsFbox539, Os_F0316,  OsFBX375, FBX375,OsFbox009, OsFbox9, Os_F0616,  OsFBDUF4, FBDUF4,OsPUB8, OsPUB08,  OsPUB8, PUB8,OsPUB66,OsWD40-55, OsCOP1, COP1, YEL, OsYEL, OsPPS, COP1-1, OsCOP1-1,  OsRING347, RING347,OsRFP,  OsRING86, OsvWA2, vWA2, OsRGLG1, RGLG1,OsFbox159, Os_F0006,  OsFBX99, FBX99,OsFbox141, Os_F0122, OsFBX86, FBX86,OsFbox083, OsFbox83, Os_F0360,  OsFBX47, FBX47,OsPUB18,  OsPUB18, PUB18,OsFbox243, Os_F0545,  OsFBX473, FBX473,OsH-BTB7,OsFbox194, Os_F0635,  OsFBX470, FBX470,OsRFP ,  OsRING393, RING393,JMJ711, OsFbox149, Os_F0347, DLN88, OsDLN88,  OsFBO14, FBO14,OsRING254,OsRING340,OsRING396,OsMB20, MB20, OsMB20a, OsMB20b, DLN234, OsDLN234,  OsMBTB47, MBTB47,Os_F0695,  OsFBDUF45, FBDUF45,OsFbox384, Os_F0579,  OsFBX247, FBX247,OsMBTB32,OsFbox460, Os_F0200,  OsFBX300, FBX300,OsFbox504, Os_F0474,  OsFBX341, FBX341,HRD1, OsHrd1, Hrd1, OsMAL,  OsRING9, RING9,OsFbox044, OsFbox44, Os_F0491,  OsFBL3, FBL3,OsPUB43,  OsPUB43, PUB43,OsRMR2,  OsRING252, RING252,OsFbox287, Os_F0750,  OsFBX182, FBX182,OsFbox148, Os_F0426,  OsFBX93, FBX93,OsRING440,OsFbox223, Os_F0055,  OsFBX145, FBX145,OsH-BTB6,OsNPY2 ,  OsBTBN14, BTBN14,,  OsBTBP2, BTBP2,OsFbox324, Os_F0220,  OsFBX205, FBX205,OsFbox531, Os_F0024,  OsFBX367, FBX367,OsFbox637, Os_F0061,  OsFBX435, FBX435,OsFbox285, Os_F0166,  OsFBX180, FBX180,OsFbox015, OsFbox15, Os_F0481, OsFBX12,  OsFBX12, FBX12,OsRING203,OsMB5, MB5, OsMB5a, OsMB5b,  OsMBTB3, MBTB3,OsRING143,OsFbox526, Os_F0056,  OsFBX362, FBX362,OsMB12, MB12,  OsMBTB27, MBTB27,OsBTBN5,OsWD40-169,  OsDWD59, DWD59, HSLG2, OsHSLG2,OsC3-BTB1,OsFbox239, Os_F0304,  OsFBX472, FBX472,OsWD40-1, WD40-1, OsWD40, WD40,  OsDWD68, DWD68,OsFBX71,OsFbox006, OsFbox6, Os_F0083, OsFBX5, OsSTA12,  OsFBX5, FBX5,OsSIRP1, SIRP1, DLN148, OsDLN148,  OsRING219, RING219,OsRING305,OsFbox506, Os_F0596,  OsFBO22, FBO22,OsWD40-176,  OsDWD25, DWD25,,  OsRING159, RING159,IPI1, RIP1, OsVIP2, OsIPI1, OsRIP1,  OsRING103, RING103,OsFbox355, Os_F0349,  OsFBX227, FBX227,OsMB41, MB41,  OsMBTB34, MBTB34,  OsMBTB35, MBTB35,OsFbox428, Os_F0440,  OsFBX278, FBX278,OsFbox154, Os_F0130,  OsFBDUF15, FBDUF15,OsMBTB66,OsPUB51, PUB51, OsRLCK194, OsUSP27, USP27,  OsPUB51, PUB51,XBOS33,  OsRING346, RING346,OsRALyase, OsFbox090, OsFbox90, Os_F0337,  OsFBO11, FBO11,TAD1, OsCCS52A, TE, OsWD40-61, TAD1/TE, CCS52A1 ,  OsCCS52A1/TE/TAD1, CCS52A1/TE/TAD1, OsCDH1A, CDH1A,OsFbox203, Os_F0600,  OsFBK14, FBK14,OsMBTB23,OsFbox279, Os_F0100,  OsFBX176, FBX176,OsWD40-81, OsLST8, LST8,  OsDWD26, DWD26,OsSDIR1, SDIR1,  OsRING198, RING198,OsRING260,OsPUB58,OsFbox295, Os_F0299,  OsFBDUF32, FBDUF32,OsFbox089, OsFbox89, Os_F0377,  OsFBX50, FBX50,OsUPL7, HECT2, OsHECT2,OsRING409,OsFbox431, Os_F0614,  OsFBX281, FBX281,OsFbox281, Os_F0379,  OsFBX475, FBX475,OsRING407,OsWD40-175,  OsDWD20, DWD20,OsRFPH2-21,  OsRING247, RING247,Os_F0720, FBL55, OsFBL55, OsAFB3, AFB3,  OsFBL55, FBL55,OsFbox225, Os_F0540,  OsFBX146, FBX146,OsRING187,OsFbox333, Os_F0159,  OsFBL33, FBL33,OsFbox591, Os_F0435, Fbox-5,  OsFBX416, FBX416,OsFbox615, Os_F0099,  OsFBX426, FBX426,OsFbox056, OsFbox56, Os_F0469,  OsFBX33, FBX33,OsFbox229, Os_F0493,  OsFBX149, FBX149,OsFbox236, Os_F0264,  OsFBX493, FBX493,OsFbox427, Os_F0221,  OsFBX277, FBX277,OsFbox246, Os_F0004,  OsFBX158, FBX158,OsFbox157, Os_F0188,  OsFBX97, FBX97,OsRING314,OsRING56,OsRING338,OsFbox629, Os_F0564,  OsFBX429, FBX429,OsFbox523, Os_F0629,  OsFBX359, FBX359,OsFbox485, Os_F0149,  OsFBX326, FBX326,OsKMD4, OsFbox596, Os_F0436,  OsFBK25, FBK25,OsRING94, OsATL53, ATL53,OsFbox008, OsFbox8, Os_F0329,  OsFBDUF3, FBDUF3,OsPUB25,  OsPUB25, PUB25,OsTLP14, TLP14, OsTLP6, OsFbox139, Os_F0681,  OsFBT5, FBT5,OsFbox277, Os_F0150,  OsFBX175, FBX175,OsRING462,OsRING410,OsRING248,OsFbox284, Os_F0301,  OsFBX179, FBX179,OsMBTB26,Os_F0767, OsTIR1, TIR1, OsAFB4, AFB4 ,  OsFBL71, FBL71,OsPUB60, UCIP6, OsUCIP6,  OsPUB60, PUB60,OsFbox280, Os_F0260,  OsFBX177, FBX177,OsMBTB30,OsRING249,OsFbox156, Os_F0603,  OsFBL62, FBL62,OsRFPH2-1,  OsRING310, RING310,OsATL32,  OsRING329, RING329,OsFbox491, Os_F0580,  OsFBX330, FBX330,OsMBTB68,OsFbox309, Os_F0312,  OsFBD11, FBD11,OsRING167,OsRING476,OsFbox652, Os_F0284,  OsFBX445, FBX445,OsRING60,OsRHP1,  OsRING278, RING278,Os_F0607,  OsFBL14, FBL14,OsFbox406, Os_F0075,  OsFBL40, FBL40,OsRING326,OsFbox226, Os_F0022,  OsFBX147, FBX147,OsPUB49, PUB49, OsRLCK307, OsUSP38, USP38,  OsPUB49, PUB49,OsRING168,OsWD40-16, WD40-16, OsSCD1,  OsDWD31, DWD31,OsMBTB67,OsFbox467, Os_F0397,  OsFBX307, FBX307,OsRING188,OsFbox129, Os_F0178,  OsFBK11, FBK11,OsRING390,OsFbox535, Os_F0208,  OsFBX371, FBX371,OsFbox227, Os_F0286,  OsFBL19, FBL19,OsFbox522, Os_F0408,  OsFBX358, FBX358,OsRING33,OsRING439,OsRING394,OsRING41,OsBTBN23,OsFbox412, Fbox412, Os_F0356,  OsFBX266, FBX266,OsBTBN4,OsHECT5, HECT5, OsUPL4,Os_F0448,  OsFBX499, FBX499,OsFbox255, Os_F0067,  OsFBX165, FBX165,OsRING401,OsFbox252, Os_F0066,  OsFBX163, FBX163,OsRINGzf1,  OsRING34, RING34,SaF, OsFbox019, OsFbox19, Os_F0070,  OsFBD1, FBD1,OsRING42,OsFbox098, OsFbox98, Os_F0174,  OsFBK9, FBK9,OsFbox537, Os_F0165,  OsFBX373, FBX373,Os_F0785, OsEnS-103,  OsFBX228, FBX228,OsFbox026, OsFbox26, Os_F0242,  OsFBX18, FBX18,OsRING420,OsFbox027, OsFbox27, Os_F0595,  OsFBL1, FBL1,OsRING211,OsFbox211, Os_F0331,  OsFBX135, FBX135,OsFbox269, Os_F0444,  OsFBL25, FBL25,CYP714C3,  OsRING155, RING155,OsFbox212, Os_F0238,  OsFBL17, FBL17,OsRING372,OsRING24,OsRFPHC-1, OsNLA2, NLA2, OsNLA2.1, OsNLA2.2, OsRING348, RING348,OsRING425,OsRING415,OsFbox174, Os_F0714,  OsFBX111, FBX111,Os_F0687,  OsFBL15, FBL15,OsWD40-102,  OsDWD33, DWD33,OsRFPHC-6,  OsRING99, RING99,OsRING475,OsFbox511, Os_F0112,  OsFBX347, FBX347,OsBT,  OsBTBZ2, BTBZ2,OsFBX335,OsRING65,OsFbox552, Os_F0216,  OsFBL52, FBL52,OsFbox530, Fbox530, Os_F0198, OsFBX365, FBX365, PEG2,  OsFBX365, FBX365,Os_F0796,  OsFBO3, FBO3,OsFbox196, Os_F0324,  OsFBL13, FBL13,OsWD40-51, OsCDC20.1, WD40-51, CDC20.1, CDC20.2, OsCDC20.2,  OsCDC20-3, CDC20-3, OsCDC20A, CDC20A,OsRFP ,  OsRING152, RING152,OsFbox003, OsFbox3, Os_F0209, OsFBX3,  OsFBX3, FBX3,OsFbox351, Os_F0298,  OsFBX223, FBX223,OsRING142,OsWD40-109, OsCDC20, CDC20, CDC20.1, OsCDC20.1,  OsCDC20-2, CDC20-2, OsCDC20B, CDC20B,OsFbox659, Os_F0424,  OsFBX449, FBX449,OsRFPH2-5, DLN133, OsDLN133,  OsRING36, RING36,OsFbox065, OsFbox65, Os_F0311,  OsFBX37, FBX37,OsFBX166,OsRING139,OsFbox320, Os_F0613,  OsFBDUF34, FBDUF34,Os_F0653,  OsFBDUF5, FBDUF5,OsHECT6, HECT6, OsUPL1,OsFbox128, Os_F0506,  OsFBL10, FBL10,OsTLP12, OsTLP2, OsFbox039, OsFbox39, Os_F0683,  OsFBT2, FBT2,OsFbox311, Os_F0115,  OsFBX197, FBX197,OsWD40-80, RGbeta1, OsRGB1,  OsDWD38, DWD38,OsFbox507, Os_F0071,  OsFBX343, FBX343,OsMrBTB2,OsRDCP3,  OsRING166, RING166,OsFBX305,OsFbox589, Os_F0137, Fbox-8,  OsFBX414, FBX414,OsBBI1,  OsRING242, RING242,OsRING311,OsFbox664, Os_F0592,  OsFBX453, FBX453,OsFbox640, Fbox640, Os_F0395, OsFBX438, FBX438,  OsFBX438, FBX438,OsMrBTB4,OsRING137,OsRFPV-1,  OsRING102, RING102,OsRING22,OsWD40-119,  OsDWD17, DWD17,OsPUB3, OsPUB03,  OsPUB3, PUB3,OsFbox486, Os_F0355,  OsFBX328, FBX328,OsFbox253, Os_F0052,  OsFBX164, FBX164,OsFbox349, Os_F0252, OsFBA2, FBA2,  OsFBA2, FBA2,OsFbox337, Os_F0302,  OsFBX213, FBX213,OsFbox657, Os_F0500,  OsFBL59, FBL59,OsPUB48, PUB48, OsRLCK69, OsUSP10, USP10,  OsPUB48, PUB48,OsFbox308, Os_F0081,  OsFBX196, FBX196,OsFBX85,OsNH5, NH5, OsBOP2,  OsBTBA5, BTBA5,OsFbox638, Os_F0021,  OsFBX436, FBX436,OsRING411,OsRING380,OsWD40-32, OsFY, FY,  OsDWD32, DWD32,OsRING418,OsFbox208, Os_F0775,  OsFBX132, FBX132,OsFbox063, OsFbox63, Os_F0090,  OsFBX35, FBX35,OsMBTB65,OsBTBN20,OsRING141,OsDRF1, OsFbox209, Os_F0001,  OsFBX133, FBX133,OsRING48,OsRING461,OsFbox651, Os_F0018,  OsFBA4, FBA4,OsFbox238, Os_F0385,  OsFBX154, FBX154,OsPUB46,OsRING124,OsH-BTB1,OsHIP1, HAF1, OsHAF1,  OsRING275, RING275,OsFbox288, Os_F0622,  OsFBX183, FBX183,OsRFPHC-10, RFPHC-10, OsSIP13 ,  OsRING413, RING413,OsDLN204,  OsRING391, RING391,OsFbox354, Os_F0275,  OsFBX226, FBX226,OsRING132,OsRING328,OsFBX279,OsPUB39,  OsPUB39, PUB39,OsFbox457, Os_F0575,  OsFBX297, FBX297,OsWD40-74,  OsDWD39, DWD39,OsWD40-79, OsMSI1, WD40-79,  OsDWD1, DWD1,OsWD40-7,  OsDWD35, DWD35,OsFbox073, OsFbox73, Os_F0359,  OsFBK3, FBK3,OsE1-BTB2,OsPUB12,  OsPUB12, PUB12,OsRING69,OsRING67,Os_F0404,  OsFBX500, FBX500,OsFbox515, Os_F0086,  OsFBX351, FBX351,OsRFP, OsPIE1,  OsRING213, RING213,OsWD40-113,  OsDWD34, DWD34,OsPHD43,  OsRING426, RING426,OsFbox184, Os_F0197,  OsFBX120, FBX120,OsHECT1, HECT1, OsUPL3,Os_F0029,  OsFBX501, FBX501,OsPUB38,  OsPUB38, PUB38,OsSTA11, OsRFP,  OsRING98, RING98,OsRING422,OsRING13,OsRING464,OsRING383,OsFbox534, Os_F0527,  OsFBX370, FBX370,OsFbox061, OsFbox61, Os_F0473,  OsFBDUF12, FBDUF12,OsPUB36,  OsPUB36, PUB36,OsPUB45, P3IP1, OsP3IP1,  OsPUB45/P3IP1, PUB45/P3IP1,OsWD40-173, WD40-173, OsMed4_1, Med4_1 ,  OsDWD4, DWD4,OsRING265,OsFBX115,OsRFPHC-2, OsRING87, RING87, OsvWA25, vWA25, OsRGLG4, RGLG4,OsRING419,MHZ2, OsMHZ2, OsSOR1, OsRING272, RING272, OsvWA13, vWA13,OsRING313,OsRFPH2-24, OsHRZ2, OsRING150, RING150, CLG1, OsCLG1,OsFbox448, Os_F0428,  OsFBDUF46, FBDUF46,Os_F0662,  OsFBX502, FBX502,OsFbox283, Os_F0368,  OsFBL26, FBL26,OsPUB64, OsHOP1, HOP1,  OsPUB64, PUB64,OsFbox147, Os_F0266,  OsFBX92, FBX92,OsFbox146, Os_F0179,  OsFBX91, FBX91,OsRFP ,  OsRING218, RING218,OsRING127,OsRING126,OsRING125,OsFbox115, Os_F0639,  OsFBX65, FBX65,OsFbox232, Os_F0576, Ctb1, OsCtb1,  OsFBK15, FBK15,OsFbox407, Os_F0406,  OsFBX261, FBX261,OsFbox634, Os_F0372,  OsFBX434, FBX434,OsRING293,OsFBX503,OsFbox451, Os_F0189,  OsFBL49, FBL49,OsRING55,OsRING421,OsFBD4,OsWD40-149,  OsDWD30, DWD30,OsFbox375, Os_F0062,  OsFBX237, FBX237,OsFbox102, Os_F0177,  OsFBO12, FBO12,OsMB9, MB9,  OsMBTB12, MBTB12,OsFbox382, Os_F0731,  OsFBX245, FBX245,OsFbox251, Os_F0085,  OsFBX162, FBX162,OsRING414,OsRING403,OsFbox414, Os_F0654,  OsFBX267, FBX267,OsFbox527, Os_F0059,  OsFBX363, FBX363,OsFbox578, Os_F0136,  OsFBL53, FBL53,OsMBTB37,OsRING324,OsFBX116,OsFbox607, Os_F0045,  OsFBX424, FBX424,OsRING369,OsFbox175, Os_F0633,  OsFBX112, FBX112,OsFbox392, Os_F0313,  OsFBL39, FBL39,OsFbox293, Os_F0585,  OsFBX186, FBX186,OsFbox476, Os_F0457,  OsFBX317, FBX317,OsRING355,SIP23,  OsRING169, RING169,OsFBX270, OsKIX_5, OsFbox419, Os_F0547, OsEnS-118,  OsFBX270, FBX270,OsFBT8,OsCHR731,  OsRING361, RING361,OsFbox177, Os_F0120,  OsFBDUF19, FBDUF19,OsFbox673, Os_F0735,  OsFBX460, FBX460,OsFbox179, Os_F0161,  OsFBX114, FBX114,OsFbox219, Os_F0485,  OsFBX141, FBX141,OsRING302,OsFbox387, Os_F0534,  OsFBX250, FBX250,OsFBX474,OsRING306, OsWLG, FLW3, OsFLW3,OsFbox079, OsFbox79, Os_F0641,  OsFBX43, FBX43,OsRING303,OsRING333,OsRING294,OsRING458,OsFbox306, Os_F0305,  OsFBX194, FBX194,OsFbox600, Os_F0472,  OsFBO4, FBO4,OsFbox358, Os_F0098,  OsFBLD4, FBLD4,OsFbox487, Os_F0548,  OsFBLD9, FBLD9,OsRING301,OsFbox542, Os_F0480, OsSTA237,  OsFBX378, FBX378,OsRING30,OsPUB41,OsRING299,OsRFP, OsDLN108, UCIP3, OsUCIP3,  OsRING214, RING214,OsFbox660, Os_F0569,  OsFBX450, FBX450,OsFbox646, Os_F0134,  OsFBX440, FBX440,OsRING295,Fbox-9-pseudo, Os_F0394,  OsFBX497, FBX497,OsATL17,  OsRING334, RING334,OsRING226,OsRING297,OsRING298,OsWD40-189,  OsDWD21, DWD21,OsMBTB62,OsFbox035, OsFbox35, Os_F0556,  OsFBX22, FBX22,OsFbox205, Os_F0044,  OsFBX131, FBX131,OsFbox517, Os_F0054,  OsFBX353, FBX353,OsFbox111, Os_F0005,  OsFBX62, FBX62,OsFbox554, Os_F0677,  OsFBX386, FBX386,OsFbox403, Os_F0338,  OsFBX260, FBX260,OsFbox187, Os_F0245,  OsFBX123, FBX123,OsFbox068, OsFbox68, Os_F0346,  OsFBLD1, FBLD1,OsRING7,OsFbox120, Os_F0441,  OsFBX70, FBX70,OsRING281,OsFbox168, Os_F0132,  OsFBO16, FBO16,OsFbox466, Os_F0587,  OsFBX306, FBX306,OsFbox513, Os_F0131,  OsFBX349, FBX349,OsRING193,OsRING178,OsFbox477, Os_F0147,  OsFBX318, FBX318,OsFbox565, Os_F0027,  OsFBX395, FBX395,OsFbox302, Os_F0143,  OsFBL29, FBL29,  OsFBX191, FBX191,OsFBX42,OsFbox631, Os_F0064,  OsFBX431, FBX431,OsRING370,OsMBTB44,OsETOL1, OsSTA97, ETOL1, STA97,  OsBTBT1, BTBT1,OsRDCP4,  OsRING165, RING165,OsFbox215, Os_F0110,  OsFBX138, FBX138,OsFbox394, Os_F0722,  OsFBX255, FBX255,OsRING20,,  OsRING277, RING277,OsRING192,OsRING97,OsRFPHC-12, RFPHC-12, DLN116, OsDLN116,  OsRING385, RING385,OsFbox213, Os_F0422,  OsFBX136, FBX136,OsFbox247, Os_F0660,  OsFBX159, FBX159,OsPUB13, OsSTA182,  OsPUB13, PUB13,OsWD40-184, OsFbox571, Os_F0380,  OsFBW2, FBW2,OsTIR1, OsFbox248, Fbox248, Os_F071, AFB,  OsFBL21, FBL21,OsFbox332, Os_F0267,  OsFBX209, FBX209,OsFbox672, Os_F0707,  OsFBX458, FBX458,  OsFBX459, FBX459,OsFbox067, OsFbox67, Os_F0477,  OsFBX38, FBX38,OsRING262,OsBTB4,OsRING228,OsFbox514, Os_F0140,  OsFBX350, FBX350,OsRING29,OsFbox609, Os_F0370, OsFKF1,  OsFBO10, FBO10,OsH-BTB4,OsFbox170, Os_F0296,  OsFBDUF17, FBDUF17,OsFBX256,OsPUB21,  OsPUB21, PUB21,OsFBX465,OsFbox033, OsFbox33, Fbox33, Os_F0114, OsFBK1, FBK1 ,  OsFBK1, FBK1,OsRING292,OsPUB34,  OsPUB34, PUB34,OsCOI1a, OsCOI1, Os_F0728, COI1a, F0728,  OsFBL4, FBL4,OsFbox201, Os_F0552,  OsFBX129, FBX129,OsWD40-2, UV-DDB2, OsUV-DDB2 ,  OsDWD10, DWD10,OsFbox665, Os_F0555,  OsFBX454, FBX454,OsBTBN16,OsFbox153,  OsFBX469, FBX469,OsFbox204, Os_F0139,  OsFBX130, FBX130,OsFbox548, Os_F0160,  OsFBX383, FBX383,OsFbox546, Os_F0513,  OsFBX382, FBX382,Os_F0780, OsFBX9,  OsFBX9, FBX9,OsFbox163, Os_F0009,  OsFBX103, FBX103,OsFbox114, Os_F0103,  OsFBX64, FBX64,OsCHR735,  OsRING284, RING284,OsFbox341, Fbox341, Os_F0215,  OsFBL34, FBL34,,  OsFBX219, FBX219,OsRING250,OsRING267,OsFbox409, Os_F0265,  OsFBX263, FBX263,OsFbox316, Fbox316, Os_F0624, OsEBF1, EBF1,  OsFBL30, FBL30,OsRING173,OsDLN35,  OsRING210, RING210,OsRING289,OsFbox566, Os_F0279,  OsFBK24, FBK24,OsMB28, MB28,  OsMBTB39, MBTB39,Os_F0627,  OsFBX491, FBX491,OsFbox561, Os_F0014,  OsFBX392, FBX392,OsFbox075, OsFbox75, Os_F0514,  OsFBX40, FBX40,OsFbox133, Os_F0449,  OsFBX79, FBX79,OsRING286,OsFbox533, Os_F0350,  OsFBX369, FBX369,OsFbox388, Os_F0605,  OsFBX251, FBX251,OsBTB5,,  OsRING151, RING151,OsFbox458, Os_F0530,  OsFBX298, FBX298,OsWD40-15,  OsDWD64, DWD64,OsFbox070, OsFbox70, Os_F0151,  OsFBX39, FBX39,OsFbox270, Os_F0454,  OsFBX171, FBX171,OsFbox411, Os_F0280,  OsFBX265, FBX265,OsFbox046, OsFbox46, Os_F0609,  OsFBX28, FBX28,OsSRWD5, OsWD40-73,  OsDWD55, DWD55,OsFbox329, Os_F0529,  OsFBX208, FBX208,OsFBX268,OsFbox165, Os_F0229, OsFbox166, Os_F0438,  OsFBX105, FBX105,  OsFBX106, FBX106,OsRING360,OsFbox292, Os_F0618,  OsFBDUF30, FBDUF30,OsRING368,OsMBTB40,OsRFPV-3,  OsRING185, RING185,OsFbox289, Os_F0510,  OsFBO18, FBO18,Os_F0733,  OsFBDUF42, FBDUF42,OsFbox241, Os_F0593,  OsFBX155, FBX155,OsMB11, MB11,  OsMBTB14, MBTB14,OsRING356,OsRFP, OsSADR1, OsSADRI, SADRI,  OsRING105, RING105,OsPMR,  OsRING154, RING154,OsRFPH2-10, RFPH2-10, OsRFI2, UCIP1, OsUCIP1,  OsRING344, RING344,OsRING111,OsFbox237, Os_F0241,  OsFBX153, FBX153,OsFbox650, Os_F0568,  OsFBX444, FBX444,OsRING184,OsZF,  OsRING28, RING28,OsFbox459, Os_F0074,  OsFBX299, FBX299,OsTLP2, OsTLP2a, OsTLP2b, OsTLP12, OsFbox402, Os_F0479,  OsFBT12, FBT12,OsHRZ1,  OsRING149, RING149,OsFbox327, Os_F0126,  OsFBX206, FBX206,OsFbox390, Os_F0759,  OsFBX488, FBX488,OsFbox556, Os_F0154,  OsFBX388, FBX388,OsRING106,OsRING109,OsFbox670, Os_F0419,  OsFBDUF66, FBDUF66,OsRING54,OsFIE2, FIE, OsWD40-153,  OsDWD46, DWD46,OsBTBN12,OsFbox082, OsFbox82, Os_F0509,  OsFBX46, FBX46,OsFbox122, Os_F0288,  OsFBX72, FBX72,OsWD40-182,  OsDWD45, DWD45,OsWD40-46,  OsDWD27, DWD27,OsRING49,OsHUB2, FRRP1, DLN241, OsDLN241,  OsRING378, RING378,OsFbox519,  OsFBX355, FBX355,OsFbox016, OsFbox16, Os_F0471, OsFBX13,  OsFBX13, FBX13,OsRING88, OsvWA3, vWA3, OsRGLG3, RGLG3,OsFbox462, Os_F0019,  OsFBX302, FBX302,OsTLP4, TLP4, OsTLP14, OsFbox645, Os_F0315,  OsFBT14, FBT14,OsRING363,OsPUB33,  OsPUB33, PUB33,Os2M2B1, 2M2B1 ,  OsMBTB69, MBTB69,OsFbox553, Os_F0250,  OsFBK23, FBK23,OsRING449,OsFbox423, Os_F0386,  OsFBX274, FBX274,OsRFPHC-8,  OsRING114, RING114,OsRING444,OsRING288,OsFBX289, OsKIX_7, OsFbox442, Os_F0407, OsEnS-121,  OsFBX289, FBX289,OsFbox234, Os_F0170,  OsFBL20, FBL20,OsFbox373, Os_F0163,  OsFBL38, FBL38,OsWD40-39,  OsDWD3, DWD3,OsFbox630, Os_F0318,  OsFBX430, FBX430,OsHECT4, HECT4, OsUPL6,OsFbox307, Os_F0034,  OsFBX195, FBX195,OsBTBN11,OsFbox318, Os_F0416,  OsFBX201, FBX201,OsBTB9,OsFbox547, Os_F0119,  OsFBK21, FBK21,OsBTB7,OsFbox549, Os_F0255,  OsFBK22, FBK22,Os_F0783,  OsFBX505, FBX505,OsBTBM1,OsMB8, MB8,  OsMBTB11, MBTB11,OsRING287,OsBTBN1,OsRFP, OsZFP1, UCIP2, OsUCIP2,  OsRING145, RING145,OsFbox367, Os_F0432,  OsFBLD8, FBLD8,OsRING89, OsvWA26, vWA26, OsRGLG6, RGLG6,OsRING236,OsRING473,OsFbox062, OsFbox62, Os_F0282,  OsFBX34, FBX34,OsFbox468, Os_F0398,  OsFBX308, FBX308,OsFbox420, Os_F0206,  OsFBX271, FBX271,OsRING364,OsRING225,OsFbox109, Os_F0628,  OsFBK10, FBK10,OsFbox350, Os_F0212,  OsFBX222, FBX222,OsRING237,OsFbox598, Os_F0672,  OsFBX480, FBX480,OsFBK12, OsFbox130, Os_F0642,  OsFBK12, FBK12,OsRING274,OsMBTB4,OsRING465,OsRING234,OsMB18, MB18,  OsMBTB15, MBTB15,OsRING23,OsRING227,OsRING207,OsRING96,OsFbox570, Os_F0219,  OsFBX397, FBX397,OsPUB15,  OsPUB15, PUB15,OsFbox413, Os_F0321,  OsFBL41, FBL41,OsRING110,OsFbox399, Os_F0281,  OsFBX259, FBX259,OsPUB55, PUB55, OsRLCK81,  OsPUB55, PUB55,OsAPIP10,  OsRING239, RING239,OsPUB30,  OsPUB30, PUB30,OsWD40-24, OsSPA3/4,  OsDWD75, DWD75,OsRFP ,  OsRING128, RING128,OsFbox584, Os_F0231,  OsFBX409, FBX409,OsRING216,OsPUB31,  OsPUB31, PUB31,OsRING156,OsRING221,OsFbox649, Os_F0410,  OsFBX443, FBX443,OsRING352,OsRING174,OsRING183,OsFbox503, Os_F0101,  OsFBK20, FBK20,OsRING371,OsFbox397, Os_F0108,  OsFBX258, FBX258,OsRING220,OsRING224,OsRING208,OsFbox023, OsFbox23, Os_F0211, OsSTA20,  OsFBD3, FBD3,OsFbox071, OsFbox71, Os_F0306,  OsFBA1, FBA1,OsFbox456, Fbox456, Os_F0543,  OsFBX296, FBX296,OsFbox339, Os_F0636,  OsFBX215, FBX215,OsWD40-14, OsDWD36, DWD36,OsFBDUF25,OsC3H41, MKRN, OsRING387, RING387, OsCPSF30-L3, CPSF30-L3,OsRING4,OsATL69,  OsRING255, RING255,OsPUB28, OsPUB45, PUB45,  OsPUB28, PUB28,OsFbox276, Os_F0412,  OsFBX174, FBX174,OsFbox250, Os_F0011,  OsFBX161, FBX161,OsPUB44,OsHTAS,  OsRING39, RING39,OsRING21,OsRFPH2-15,  OsRING316, RING316, OsvWA6, vWA6,OsFBL18,OsAFB2, ABF2, OsAFB2-1, OsAFB2-2, OsFbox206, Os_F0492, OsTIR1, TIR1,  OsFBL16, FBL16,OsFbox343, Os_F0141,  OsFBX216, FBX216,OsRING93,BTBN6,  OsBTBN6, BTBN6,Os_F0684,  OsFBX506, FBX506,OsFbox092, OsFbox92, Os_F0704,  OsFBX51, FBX51,OsDLN200,  OsRING15, RING15,OsFbox379, Os_F0261,  OsFBX242, FBX242,OsMBTB42,OsRING241,OsFbox123, Os_F0289,  OsFBX73, FBX73,OsFbox478, Os_F0354,  OsFBX319, FBX319,OsRING238,Os_F0726,  OsFBX487, FBX487,OsWD40-26, OsKTN80c,  OsDWD8, DWD8,OsRING452,OsFbox521, Os_F0526,  OsFBX357, FBX357,OsRING27,OsRING58,OsFbox520, Os_F0588,  OsFBX356, FBX356,OsRING10,OsFbox144, Os_F0237,  OsFBX89, FBX89,OsRING251,OsRING83,OsFbox639, Os_F0382,  OsFBX437, FBX437,OsPAL07, OsPAL, PAL07, OsPAL6, PAL6, PAL1, OsPAL7, PAL7,OsFbox319, Os_F0429,  OsFBK17, FBK17,OsRING471,IBF1, OsFBX310, FBX310,  OsFBX310, FBX310,OsBTBN17,OsRFPV-6,  OsRFPv6, OsRING135, RING135,OsFbox389, Os_F0673,  OsFBX252, FBX252,OsFbox364, Os_F0107,  OsFBLD6, FBLD6,OsFbox199, Os_F0630,  OsFBX128, FBX128,OsFbox642, Os_F0213,  OsFBO24, FBO24,qGL3.5,  OsRING456, RING456,OsFbox464, Os_F0048,  OsFBX304, FBX304,OsAPIP6,  OsRING382, RING382, IPI7, OsIPI7,OsFbox587, Os_F0097,  OsFBX412, FBX412,OsFbox191, Os_F0109,  OsFBD10, FBD10,OsWD40-194,  OsDWD12, DWD12, OsWDR48,OsRING95,OsFbox124, Os_F0262,  OsFBX74, FBX74,OsRING92,OsWD40-171,  OsDWD63, DWD63, OsDWD1, DWD1,OsFbox110, Os_F0551,  OsFBX61, FBX61,OsRING204,OsRFP ,  OsRING343, RING343,Os_F0253,  OsFBX402, FBX402,OsFBX471,OsMB26, MB26,  OsATBPM2, ATBPM2,OsBTB3,OsFbox197, Os_F0620,  OsFBX127, FBX127,OsFbox192, Os_F0688,  OsFBX126, FBX126,OsWD40-40, WD40-40, OsDWD60, DWD60, OsSLG2,OsFbox499, Os_F0020,  OsFBX338, FBX338,OsFbox529, Os_F0667, OsEnS-132,  OsFBX364, FBX364,OsFBX25,OsFbox064, OsFbox64, Os_F0285,  OsFBX36, FBX36,OsFbox221, Os_F0036,  OsFBX143, FBX143,OsPUB76,  OsPUB76, PUB76,OsFBX393,OsFbox126, Os_F0788,  OsFBX486, FBX486,OsFbox481, Os_F0362, FBX322, OsFBX322,  OsFBX322, FBX322,OsPUB70, PUB70, OsRLCK197, UCIP19, OsUCIP19,  OsPUB70, PUB70, OsBSK5, BSK5,OsRING107,OsFbox336, Os_F0293,  OsFBX212, FBX212,,  OsFBX240, FBX240,OsCTR1,  OsRING325, RING325,SIP17,  OsBTBN25, BTBN25,OsRING450,OsFbox072, OsFbox72, Fbox72, Os_F0508, OsEBF2, EBF2,  OsFBL7, FBL7,OsFbox095, OsFbox95, Os_F0274, OsSTA64,  OsFBX52, FBX52,OsRING202,OsWD40-178, OsPUB72,  OsDWD6, DWD6,  OsPUB72, PUB72,OsFbox190, Os_F0204,  OsFBD9, FBD9,OsFbox347, Os_F0072,  OsFBX220, FBX220,OsFbox363, Os_F0353,  OsFBLD5, FBLD5,OsWD40-78,  OsDWD73, DWD73,OsFbox348, Os_F0035,  OsFBX221, FBX221,OsRING59,OsRDCP2,  OsRING319, RING319,OsRFP, OsMAR1, MAR1,  OsRING230, RING230,OsFbox218, Os_F0597,  OsFBDUF22, FBDUF22,OsFbox055, OsFbox55, Os_F0463,  OsFBDUF10, FBDUF10,,  OsRING45, RING45,OsFbox512, Os_F0102,  OsFBX348, FBX348,OsFBX321,OsFbox632, Os_F0391,  OsFBX432, FBX432,OsFbox564, Os_F0113,  OsFBX394, FBX394,OsAAP7B, OsAAP14, AAP14, OsAAP14a, OsAAP14b,  OsMBTB9, MBTB9,OsFbox524, Os_F0561,  OsFBX360, FBX360,OsTLP5, TLP5, OsTLP3, OsFbox050, OsFbox50, Os_F0396,  OsFBT3, FBT3,OsRFPV-2,  OsRING231, RING231,OsRING108,OsFbox037, OsFbox37, Os_F0332,  OsFBX24, FBX24,,  OsFBL65, FBL65,OsRFP, OsSIRP2, SIRP2,  OsRING131, RING131,OsFbox405, Os_F0623,  OsFBDUF41, FBDUF41,OsRING122,OsFbox592, Os_F0128, Fbox-4,  OsFBX417, FBX417,Os_F0390,  OsFBX400, FBX400,OsFbox654, Os_F0092,  OsFBX447, FBX447,OsFbox040, OsFbox40, Os_F0476,  OsFBX26, FBX26,OsFBX200,OsATL101,  OsRING304, RING304,OsRING120,OsPUB73,OsRING11,OsRING121,OsRING112,OsRING113,OsRING100,OsRING118,OsRING119,OsRING115,OsRING117,OsFbox550, Os_F0263,  OsFBX384, FBX384,OsFbox482, Os_F0167,  OsFBX323, FBX323,OsPUB47, PUB47, OsRLCK207, OsUSP29, USP29,  OsPUB47, PUB47,OsBIRF1,  OsRING50, RING50,,  OsRING443, RING443,HEI10A, HEI10B, OsHEI10,  OsRING434, RING434,OsFBX236,OsRING61,SRWD4, OsWD40-160,  OsDWD56, DWD56,OsBTB2,OsFbox500, Os_F0186,  OsFBX339, FBX339,OsFbox391, Os_F0082,  OsFBX253, FBX253,qSSR9-1,  OsRING215, RING215,OsFbox188, Os_F0182,  OsFBX124, FBX124,OsRING101,XBOS31, OsRFPHC-7,  OsRING222, RING222,OsPUB6, OsPUB06,  OsPUB6, PUB6,OsRFPH2-3,  OsRING217, RING217,OsFbox011, OsFbox11, Os_F0196, OsFBX7, FBX7,  OsFBX7, FBX7,OsRFP,  OsRING321, RING321,OsFbox235, Os_F0248,  OsFBX152, FBX152,OsRING52,OsFBX467,OsRING148,Os_F0734,  OsFBX485, FBX485,OsFbox617, Os_F0505,  OsFBDUF55, FBDUF55,OsFBX218,OsB4-BTOsB4,Os_F0752,  OsFBL64, FBL64,OsMrBTB3,OsMB44, MB44, DLN237, OsDLN237,  OsMBTB60, MBTB60,OsFBX199,OsPUB29,  OsPUB29, PUB29,OsFbox560, Os_F0582,  OsFBX391, FBX391,OsRING438,Xb3,  OsRING223, RING223,OsRING342,OsFBO19,OsFbox282, Os_F0643,  OsFBX178, FBX178,OsFbox585, Os_F0294,  OsFBX410, FBX410,OsFbox463, Os_F0230,  OsFBX303, FBX303,OsRBX1b, RBX1b,  OsRING441, RING441,OsFbox623, Os_F0502,  OsFBDUF61, FBDUF61,OsFbox198, Os_F0644,  OsFBDUF20, FBDUF20,OsWD40-123, OsSPA1,  OsDWD76, DWD76,OsFbox047, OsFbox47, Os_F0754,  OsFBX29, FBX29,Os_F0617,  OsFBX483, FBX483,OsRING44,Os_F0138,  OsFBX59, FBX59,,  OsRING46, RING46,OsRING140,OsRINGC2-2,  OsRING307, RING307,OsRING339,OsRING266,OsRING436,OsFbox029, OsFbox29, Os_F0384,  OsFBX482, FBX482,OsFbox643,  OsFBX481, FBX481,OsRING472,OsSIP14, RIP1, OsRIP1,  OsRING77, RING77,OsFbox518, Os_F0218,  OsFBX354, FBX354,OsBTBN3,OsFbox558, Os_F0376,  OsFBX390, FBX390,OsH2B.7, OsFBO1, FBO1,OsPUB67,OsFBX100,OsRING349,Os_F0711,  OsFBL69, FBL69,OsFbox378, Os_F0217,  OsFBX241, FBX241,OsRFP ,  OsRING282, RING282,OsFbox087, OsFbox87, Os_F0536,  OsFBL8, FBL8,OsFbox452, Os_F0193,  OsFBL50, FBL50,OsB4-BTB2,OsWD40-179, OsKTN80a,  OsDWD9, DWD9,OsFbox217, Os_F0121, MOF, OsMOF,  OsFBX140, FBX140,OsFbox265, Os_F0584,  OsFBX168, FBX168,OsRMT1,  OsRING362, RING362,OsFbox567, Os_F0713,  OsFBX490, FBX490,OsWD40-42,  OsDWD51, DWD51,OsH-BTB2,OsPUB77, OsEnS-73,  OsPUB77, PUB77,OsFbox172, Os_F0303,  OsFBX109, FBX109,OsRING337,OsRDCP5,  OsRING417, RING417,OsPUB42,OsFbox563, Os_F0773,  OsFBL66, FBL66,OsRING447,OsWD40-142,  OsDWD11, DWD11,OsFbox612, Os_F0268,  OsFBDUF51, FBDUF51,OsRING197,OsSTA244,  OsBTB6, BTB6,OsRFPH2-6,  OsRING47, RING47,OsFbox356, Os_F0118,  OsFBX229, FBX229,OsRING309,OsFbox450, Os_F0185,  OsFBX294, FBX294,OsFbox353, Os_F0501,  OsFBX225, FBX225,OsABB1,OsSIRP4,  OsRING8, RING8,OsRING196,OsFbox525, Os_F0176,  OsFBX361, FBX361,OsFbox151, Os_F0222,  OsFBK13, FBK13,OsTLP9, TLP9, OsTLP9a, OsTLP9b, OsTLP9c, OsTLP1, OsFbox034, OsFbox34, Os_F0675,  OsFBT1, FBT1,OsPUB5, OsPUB05,  OsPUB5, PUB5,OsFbox400, Os_F0541,  OsFBK19, FBK19,OsFbox603, Os_F0489,  OsFBL56, FBL56,OsRING116,OsRING70,OsHCI1, E3UL, OsRING206, RING206,OsFbox274, Os_F0450,  OsFBX172, FBX172,OsFBDUF14,OsMB29, MB29,  OsMBTB45, MBTB45,OsFbox601, Os_F0719,  OsFBL68, FBL68,OsRING463,OsWD40-147,  OsDWD44, DWD44,OsMBTB5,OsRING300,OsFbox371, Os_F0357,  OsFBX235, FBX235,OsFbox266, Os_F0434,  OsFBX169, FBX169,OsA3-BTB1,OsFbox286, Os_F0619,  OsFBX181, FBX181,,  OsRING327, RING327,OsABTB1,OsFbox365, Os_F0205,  OsFBL37, FBL37,OsRING351,OsFbox105, Os_F0549,  OsFBX58, FBX58,OsFbox352, Os_F0525,  OsFBX224, FBX224,OsTLP7, TLP7, OsTLP11, OsFbox398, Os_F0421,  OsFBT11, FBT11,OsWD40-70,  OsDWD2, DWD2,OsFbox143, Os_F0129,  OsFBX88, FBX88,OsFBX234, OsFbox369, Os_F0191,  OsFBX234, FBX234,OsFbox627, Os_F0089,  OsFBX427, FBX427,Os_F0247,  OsFBO6, FBO6,OsRING194,OsRING367,OsFbox582, Os_F0511,  OsFBX407, FBX407,Os_F0701, OsAFB6, AFB6, OsAFB5, AFB5,  OsFBL70, FBL70,OsRING57,OsWD40-64,  OsDWD49, DWD49,OsWD40-34, OsRUP,  OsDWD72, DWD72,OsFbox025, OsFbox25, Os_F0325,  OsFBD5, FBD5,OsFbox386, Os_F0523,  OsFBX249, FBX249,OsFbox059, OsFbox59, Os_F0692,  OsFBL6, FBL6,OsTLP6, TLP6, OsTLP13, OsFbox569, Os_F0461,  OsFBT13, FBT13,OsRFP, OsDLN24,  OsRING179, RING179,OsFbox058, OsFbox58, Os_F0591, DLN37, OsDLN37, CHR707, OsCHR707,  OsFBO7, FBO7,OsGW2, OsRING429, RING429, GNL44, OsGNL44,OsFbox022, OsFbox22, Os_F0366,  OsFBD2, FBD2,OsFbox424, Os_F0348,  OsFBL44, FBL44,OsRING263,OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2, DLN5, OsDLN5,  OsBTBA1, BTBA1,OsFbox116, Os_F0291,  OsFBX66, FBX66,OsRING335,OsFbox599,  OsFBX492, FBX492,OsFbox094, OsFbox94, Os_F0336,  OsFBL9, FBL9,OsWD40-121,  OsDWD15, DWD15,OsSRFP1,  OsRING157, RING157, SDEL2, OsSDEL2,OsMB4, MB4,  OsMBTB1, MBTB1,OsFbox360, Os_F0235,  OsFBX232, FBX232,OsWD40-60,  OsDWD69, DWD69,OsFBX244,OsRING-1,  OsRING341, RING341,OsFbox644, Os_F0725,  OsFBX439, FBX439,OsMEL,  OsRING460, RING460,OsKMD3, OsFbox096, OsFbox96, Os_F0169,  OsFBK8, FBK8,,  OsFBX366, FBX366,OsFbox100,  OsFBX55, FBX55,OsFbox663, Os_F0276,  OsFBX452, FBX452,OsRFPH2-17,  OsRING358, RING358,OsFbox357, Os_F0033,  OsFBX230, FBX230,OsWD40-76,  OsDWD66, DWD66,OsMB3, MB3,  OsMBTB2, MBTB2,Os_F0756,  OsFBO17, FBO17,OsFbox396, Os_F0578, OsMsr9, Msr9,  OsFBX257, FBX257,OsMB30, MB30,  OsMBTB52, MBTB52,OsFbox479, Os_F0399,  OsFBX320, FBX320,OsPUB68,  OsPUB68, PUB68,OsRFP ,  OsRING240, RING240,OsFbox583, Os_F0363,  OsFBX408, FBX408,OsFbox626,  OsFBDUF64, FBDUF64,OsPUB61, PUB61, OsRLCK285, OsUSP35, USP35,  OsPUB61, PUB61,OsRING453,OsFbox636, Fbox636, Os_F0774,  OsFBL63, FBL63,OsPUB20,  OsPUB20, PUB20,OsRING264,OsFbox097, OsFbox97, Os_F0402,  OsFBX53, FBX53,OsRING253,OsRING455,OsFbox376, Os_F0063,  OsFBX238, FBX238,OsFbox081, OsFbox81, Os_F0375,  OsFBX45, FBX45,OsDLN109,  OsRING375, RING375,OsFbox230, Os_F0308,  OsFBX150, FBX150,OsFbox181, Os_F0655,  OsFBX117, FBX117,OsFBX428,OsFbox435, Os_F0317,  OsFBO20, FBO20,OsRING85, OsvWA39, vWA39, OsRGLG2, RGLG2,OsFbox335, Os_F0487,  OsFBX211, FBX211,,  OsFBX484, FBX484,OsFbox231, Os_F0565,  OsFBX151, FBX151,OsFbox545, Os_F0535,  OsFBX381, FBX381,OsFbox018, OsFbox18, Os_F0259,  OsFBX15, FBX15,OsFbox088, OsFbox88, Os_F0475,  OsFBX49, FBX49,OsFbox051, OsFbox51, Os_F0330,  OsFBX31, FBX31,OsFbox608, Os_F0043,  OsFBX425, FBX425,Os_F0661,  OsFBX489, FBX489,OsA3-BTB2,OsFbox446, Os_F0095,  OsFBX292, FBX292,OsPUB10,  OsPUB10, PUB10,OsDLN56, CHR710, OsCHR710,  OsRING283, RING283,OsFbox345, Os_F0495,  OsFBX217, FBX217,OsFbox268, Os_F0080,  OsFBX170, FBX170,OsFbox340, Os_F0124,  OsFBK18, FBK18,OsRING153,OsPUB54, PUB54, OsRLCK306,  OsPUB54, PUB54,OsMB37, MB37,  OsMBTB59, MBTB59,OsFbox150, Os_F0123,  OsFBX94, FBX94,OsFbox020, OsFbox20, Os_F0674,  OsFBX16, FBX16,OsFbox185, Os_F0197,  OsFBX121, FBX121,OsFbox613, Os_F0243,  OsFBDUF52, FBDUF52,OsWD40-111,  OsDWD43, DWD43,OsFbox362, Os_F0439,  OsFBL36, FBL36,OsFbox580, Os_F0096,  OsFBX405, FBX405,EP3/LP, LP, OsLP, OsFbox076, OsFbox76, Os_F0106, OsEP3,  OsFBK5, FBK5,OsKMD2, KMD2, OsFbox314, Fbox314, Os_F0507, OsFBK16, FBK16,OsFbx352, OsFbox516, Fbx352, Fbox516, Os_F0046,  OsFBX352, FBX352,OsRING171,OsFbox183, Fbox183, Os_F0203, F-box119,  OsFBX119, FBX119,OsRFP, OsDLN115,  OsRING354, RING354,OsRFPH2-4,  OsRING91, RING91,OsFbox275, Os_F0483,  OsFBX173, FBX173,OsRING63,OsRING470,OsFbox010, OsFbox10, Os_F0156, OsFBX6,  OsFBX6, FBX6,OsFbox495, Os_F0522,  OsFBX334, FBX334,Os_F0079,  OsFBX399, FBX399,OsFbox433, Os_F0239,  OsFBX282, FBX282,OsWD40-53,  OsDWD23, DWD23,OsWD40-43,  OsDWD7, DWD7,OsMrBTB5,OsFbox017, OsFbox17, Os_F0392,  OsFBX14, FBX14,OsRING212, OsvWA38, vWA38,OsFbox408, Os_F0490,  OsFBX262, FBX262,Os_F0199,  OsFBX478, FBX478,OsRFP ,  OsRING177, RING177,OsFBX287,OsFbox091, OsFbox91, Os_F0517,  OsFBK7, FBK7,OsPUB14,  OsPUB14, PUB14,OsFbox658, Os_F0589,  OsFBL60, FBL60,OsFbox216, Os_F0328,  OsFBX139, FBX139,OsNPR3, OsNH3, NPR3, OsNPR3.1, OsNPR3.2, OsNPR3.3 ,  OsBTBA4, BTBA4, OsNPR4, NPR4,OsRING195,OsRZFP34, OsRFP1, RZFP34, UCIP18, OsUCIP18,  OsRING160, RING160,Os_F0344, OsFBL31, FBL31,OsFbox005, OsFbox5, Os_F0747, OsFBX4,  OsFBX4, FBX4,OsFbox624, Os_F0226,  OsFBDUF62, FBDUF62,OsDLN22, DLN22, CHR706, OsCHR706, OsALT1,  OsRING431, RING431,OsFbox528, Os_F0224,  OsFBO5, FBO5,OsFbox470, Os_F0504,  OsFBX311, FBX311,OsFbox134, Os_F0443,  OsFBX80, FBX80,OsRFPH2-9, OsRING129, RING129, OsvWA8, vWA8,OsRFP ,  OsRING90, RING90,OsFbox361, Os_F0171,  OsFBX233, FBX233,Os_F0300,  OsFBX477, FBX477,OsFbox084, OsFbox84, Os_F0452,  OsFBK6, FBK6,OsFbox053, OsFbox53, Os_F0309, OsLC4,  OsFBX32, FBX32,OsFbox444, Os_F0648,  OsFBX291, FBX291,OsFbox593, Os_F0278, Fbox-3,  OsFBX418, FBX418,OsDSG1,  OsRING408, RING408,OsRING359,OsRFPH2-2,  OsRING323, RING323,OsCHR724,  OsRING164, RING164,OsFbox249, Os_F0030,  OsFBX160, FBX160,OsMBTB25,OsRING466,OsFbox330, Os_F0521,  OsFBD13, FBD13,OsFBX283, OsKIX_6, OsFbox434, Os_F0157,  OsFBX283, FBX283,JMJ716,  OsRING427, RING427,OsFbox475, Os_F0634,  OsFBX316, FBX316,OsRING353,OsRBX1a, RBX1a,  OsRING442, RING442,OsFbox440, Os_F0542,  OsFBDUF44, FBDUF44,OsFBX415,OsWD40-91,  OsDWD24, DWD24,Os_F0723,  OsFBL67, FBL67,OsPUB23,OsRFP ,  OsRING412, RING412,OsFBX442,OsRFPH2-16, OsGIRP1,  OsRING32, RING32,OsPUB16,  OsPUB16, PUB16,OsFbox069, OsFbox69, Os_F0227,  OsFBD6, FBD6,OsMEL2,  OsRING430, RING430,OsFbox228, Os_F0553,  OsFBX148, FBX148,OsRING397,OsMBTB50,OsFbox301, Os_F0013,  OsFBX190, FBX190,OsFbox108, Os_F0236,  OsFBX60, FBX60,OsPUB65,  OsPUB65, PUB65,OsFbox605, Os_F0437,  OsFBL57, FBL57,OsRING467,OsRING72,OsFbox103, Os_F0039,  OsFBX57, FBX57,OsFBX189,OsRMR3, OsRMR1, RMR1,  OsRING73, RING73,OsFbox106, Os_F0496,  OsFBD8, FBD8,OsFbox509, Os_F0258, OsADF, ADF,  OsFBX345, FBX345,OsRING469,OsH-BTB3,OsRING280,OsRING71,OsBRCA1,  OsRING285, RING285,OsFbox471, Os_F0538,  OsFBX312, FBX312,OsPUB69,  OsPUB69, PUB69,NH5, OsNH5, OsBOP3,  OsBTBA6, BTBA6,OsFbox472, Fbox472, Os_F0599, OsFBX313, FBX313,  OsFBX313, FBX313,SnRK2, OsCHR715,  OsRING432, RING432,OsFbox421, Os_F0249,  OsFBX272, FBX272,OsMB15, MB15,  OsMBTB24, MBTB24,OsRING74,OsFbox142, Os_F0023,  OsFBX87, FBX87,OsFbox474, Os_F0632,  OsFBX315, FBX315,OsCOI1b, COI1b, OsCOI1H, COI1H, OsFbox260, Fbox260, Os_F0646,  OsFBL23, FBL23, OsCOl-1, COl-1,OsFbox045, OsFbox45, Os_F0307,  OsFBX27, FBX27,OsFbox647, Os_F0466,  OsFBX441, FBX441,OsRING62,OsFBD17,OsMB24, MB24,  OsMBTB43, MBTB43,OsBTBZ4,OsRFP, RFP, OsAIR2 ,  OsRING271, RING271,Os_F0699,  OsFBX84, FBX84,OsTLP10, TLP10, OsTLP10a, OsTLP10b, OsTLP9, OsFbox267, Os_F0560,  OsFBT9, FBT9,OsSIP33, RIP2, OsRIP2,  OsRING76, RING76,OsFbox473, Os_F0455,  OsFBX314, FBX314,OsRFPH2-8,,  OsRING68, RING68
51970	35893632	Kang L., Teng Y., Cen Q., Fang Y., Tian Q., Zhang X., Wang H., Zhang X., Xue D.	Genome-Wide Identification of R2R3-MYB Transcription Factor and Expression Analysis under Abiotic Stress in Rice.	Plants (Basel)	11(15)		2022	DLN182,2R_MYB83,2R_MYB34,ARM1,GAMYBL2,2R_MYB36 ,BIP127,2R_MYB64,2R_MYB24,2R_MYB70,2R_MYB61,2R_MYB88,_,_,MYB9,MYB21,2R_MYB1 ,MPS,2R_MYB13,2R_MYB33,_,GAMYB,2R_MYB37,MYB20,_,MYB52,2R_MYB49,MYB4P,MYBAS1,2R_MYB69,2R_MYB54,2R_MYB80,PL,2R_MYB31,2R_MYB78,RGN1,2R_MYB7,RLM1,2R_MYB23,2R_MYB73 ,DLN254,2R_MYB21,MS188,2R_MYB84,2R_MYB57,2R_MYB6 ,GAMYBL1,CSA2,2R_MYB47,2R_MYB2 ,MYB46,_,2R_MYB22 ,MYB14,SH11,2R_MYB3,_,MYB12,C,2R_MYB20,MYB36A,2R_MYB52,_,GL1A,2R_MYB67,MYB86-L1,2R_MYB79,MYB1,DLN231,2R_MYB35,2R_MYB14,2R_MYB65,MYB106,2R_MYB97,GL1D,DLN31,MYB10,_,2R_MYB4 ,2R_MYB72 ,MYB11,2R_MYB50,MYB36B,MYB3R1,2R_MYB76,_,MYB36C,MYB8,2R_MYB45,DLN29,2R_MYB48,MYB48,MYB30,DLN156,2R_MYB38,CEF1,MYB19 ,MYB39	OsDLN182, Os2R_MYB68, 2R_MYB68,Os2R_MYB83,Os2R_MYB34,OsMYB-1, MYB-1, MYB1, OsARM1, Os2R_MYB56, 2R_MYB56, OsMYBxoc1, MYBxoc1,OsGAMYBL2, Os2R_MYB40, 2R_MYB40,OsMYB2, MYB2, Os2R_MYB36 ,OsBIP127, TRBF2, OsTRBF2, Os2R_MYB99, 2R_MYB99,Os2R_MYB64,Os2R_MYB24,Os2R_MYB70,OsSTA160, Os2R_MYB61,Os2R_MYB88,OsMYB58/63-L, MYB58/63-L, OsMYB58/63a, MYB58/63a, Os2R_MYB29, 2R_MYB29, OsMYB58, MYB58,Osmyb7, myb7, OsMYB38, MYB38, Os2R_MYB28, 2R_MYB28,OsMyb9, OsMyb8, OsMYB110, Myb9, Myb8, MYB110, Os2R_MYB87, 2R_MYB87,R2R3-MYB, OsMYB21, Os2R_MYB27, 2R_MYB27,Os2R_MYB1 ,OsMPS, Os2R_MYB25, 2R_MYB25,Os2R_MYB13,Os2R_MYB33,OsMYB55/61, OsMYB55, MYB55, OsMYB61, MYB61, OsMYB61a, MYB61a, Os2R_MYB5, 2R_MYB5 ,OsGAMYB, GAM1, OsGAMyb, Os-MYBGA, Os GAMYB, OsMYBGA, MYBGA, Os2R_MYB15, 2R_MYB15 ,Os2R_MYB37,OsMYB20, MYB20/43, Os2R_MYB30, 2R_MYB30,OsMYB42/85, MYB42/85, OsMYB85, MYB85, Os2R_MYB85, 2R_MYB85 ,OsMYB52, OsMYB52/54, Os2R_MYB41, 2R_MYB41,OsMYB58, MYB58, Os2R_MYB49,OsMYB4P, Os2R_MYB90, 2R_MYB90,OsMYBAS1, Os2R_MYB92, 2R_MYB92,Os2R_MYB69,Os2R_MYB54,Os2R_MYB80,OsMYB55, OsMYB-2, MYB55, MYB-2, OsPL, Os2R_MYB60, 2R_MYB60,Os2R_MYB31,Os2R_MYB78,OsRGN1, Os2R_MYB10, 2R_MYB10 ,Os2R_MYB7,OsMYB86-L2, MYB86-L2, OsRLM1, Os2R_MYB59, 2R_MYB59,Os2R_MYB23,R2R3-MYB, Os2R_MYB73 ,R2R3-MYB, OsDLN254, OsMYB2, Os2R_MYB94, 2R_MYB94,Os2R_MYB21,OsMYB80, MYB80, OsMS188, Os2R_MYB44, 2R_MYB44, OsMYB103/OsMYB80/OsMS188/BM1, OsMYB103, MYB103,OsMYB30, MYB30, Os2R_MYB84,Os2R_MYB57,OsMYB, Os2R_MYB6 ,OsGAMYBL1, OsMYB80, MYB80, Os2R_MYB66, 2R_MYB66,OsCSA2, MYB5, OsMyb5, OSMYB5, Os2R_MYB58, 2R_MYB58,R2R3-MYB, Os2R_MYB47,Os2R_MYB2,OsMYB46, OsMYB122, MYB122, Os2R_MYB96, 2R_MYB96 ,R2R3-MYB, OsMYB55/61-L,  MYB55/61-L,  OsMYB55,  OsMYB61-L, MYB55,  MYB61-L, OsMYB61L, MYB61L, OsMYB61b, MYB61b, Os2R_MYB53, 2R_MYB53, OsMYB2P-1, MYB2P-1,OsMYB1, MYB1, Os2R_MYB22 ,OsMYB14, OsJAdMYB1, JAdMYB1, Os2R_MYB12, 2R_MYB12 ,OsJAmyb, JAmyb, OsJAMyb, OsMYB21, MYB21, Os2R_MYB91, 2R_MYB91, OgSH11, OsSH11,Os2R_MYB3,OsMyb4, OSMYB4, MYB4, OsEnS-11, OsGL1C, GL1C, OsMYB13, MYB13, Os2R_MYB11, 2R_MYB11 ,OsMyb12, Os2R_MYB89, 2R_MYB89 ,C, Cp, OsC1, Os-C1, C1, OsMyb6, Myb6, OsPL6, PL6, OsGL1E, GL1E, Os2R_MYB63, 2R_MYB63, OsC1PLSr, C1PLSr,R2R3-MYB, OsEnS-23, Os2R_MYB20,OsMYB36a, Os2R_MYB75, 2R_MYB75,Os2R_MYB52,OsMYB4, Osmyb4, OsMyb4, MYB4, OsMYB55, MYB55, OsMyb8, MYB8, OsMYB13b, MYB13b, OsMYB15, MYB15, Os2R_MYB46, 2R_MYB46,R2R3-MYB, OsGL1A, DLN218, OsDLN218, OsMYB102, MYB102, Os2R_MYB81, 2R_MYB81 ,Os2R_MYB67,OsMYB86-L1, Os2R_MYB8, 2R_MYB8 ,Os2R_MYB79,OsMyb1, OSMYB1, R2R3-MYB, OsDLN141, DLN141, Os2R_MYB55, 2R_MYB55 ,R2R3-MYB, OsDLN231, OsMYB108, MYB108, OsMYB31, MYB31, Os2R_MYB86, Os2R_MYB86, 2R_MYB86 ,Os2R_MYB35,Os2R_MYB14,Os2R_MYB65,OsMYB106, Os2R_MYB77, 2R_MYB77,R2R3-MYB, Os2R_MYB97,OsMyb3, OSMYB3, MYB3, OsGL1D, OsMYB46, MYB46, Kala3, OsKala3, SMG3, OsSMG3, Os2R_MYB39, 2R_MYB39,R2R3-MYB, OsDLN31, MYB3, OsMYB22, MYB22, Os2R_MYB18, 2R_MYB18 ,OsMyb10, Os2R_MYB82, 2R_MYB82,OsMyb7, Myb7, OsMYB102, MYB102, Os2R_MYB71, 2R_MYB71,R2R3-MYB, Os2R_MYB4 ,R2R3-MYB, Os2R_MYB72 ,OsMyb11, Myb11, OsMYB60, MYB60, Os2R_MYB93, 2R_MYB93 ,Os2R_MYB50,OsMYB36b, Os2R_MYB32, 2R_MYB32,OsMYB3R-1, OsMYB3R1, Os2R_MYB95, 2R_MYB95,Os2R_MYB76,R2R3-MYB, MYB48/59, OsMYB48/59, Os2R_MYB98, 2R_MYB98,OsMYB36c, Os2R_MYB42, 2R_MYB42,OsMYB8, OsMYB305, MYB305, Os2R_MYB9, 2R_MYB9 ,R2R3-MYB, Os2R_MYB45,OsDLN29, Os2R_MYB17, 2R_MYB17 ,Os2R_MYB48,OsMYB48, OsMYB48-1, OsMYB48-2, OsMYB59, MYB59, Os2R_MYB19, 2R_MYB19 ,OsMYB30, OsMYB5P, MYB5P, OsMYB13a, MYB13a, Os2R_MYB26, 2R_MYB26, OsMYB30C, MYB30C,R2R3-MYB, OsDLN156, Os2R_MYB62, 2R_MYB62 ,OsMYB5, MYB5, Os2R_MYB38,OsMYB103, OsMYB103L, CEF1/OsMYB103L, MYB103, MYB103L, OsMYB93, MYB93, OsFC9, FC9, Os2R_MYB74, 2R_MYB74,R2R3-MYB, OsMYB19, Os2R_MYB16, 2R_MYB16 ,Os-MYB39, OsMYB39, Os2R_MYB43, 2R_MYB43
51971	35878695	Wang H., Tu R., Ruan Z., Wu D., Peng Z., Zhou X., Liu Q., Wu W., Cao L., Cheng S., Sun L., Zhan X., Shen X.	STRIPE3, encoding a human dNTPase SAMHD1 homolog, regulates chloroplast development in rice.	Plant Sci.	323	111395	2022		
51972	35899195	Chen Z., Yin W., Li X., Lu T., Ye H., Dai G., Mao Y., Li S., Duan P., Lu M., Rao Y., Wang Y.	<i>OsSPL88</i> Encodes a Cullin protein that Regulates Rice Growth and Development.	Front Genet	13	918973	2022	AOS2,NH2,BWMK1,SPL88 	OsAOS2, CYP74A2, OsAOS, OsAOS1,OsNH2, OsNPR2, NPR2, OsNPR2/NH2, DLN21, OsDLN21, PR2, OsNPR1, NPR1,  OsBTBA2, BTBA2, OsNPR3, NPR3,OsBWMK1, MPK12, MAPK1, OsMAPK1, OsMPK12, OsMPK17-1, MPK17-1, OsBWMK1L, OsBWMK1M, OsBWMK1S, OsMAPK17-1, MAPK17-1, MAPK12, OsMAPK12,OsCUL3a, CUL3a, OsSPL88 
51973	35781755	Zhang Y.F., Li Y.L., Zhong X., Wang J.J., Zhou L., Han Y., Li D.D., Wang N., Huang X.H., Zhu J., Yang Z.N.	Mutation of glucose-methanol-choline oxidoreductase leads to thermosensitive genic male sterility in rice and Arabidopsis.	Plant Biotechnol. J.	20(10)	2023-2035	2022	NP1 ,MS188	OS-ACE, OsNP1, OsTMS18, TMS18,OsMYB80, MYB80, OsMS188, Os2R_MYB44, 2R_MYB44, OsMYB103/OsMYB80/OsMS188/BM1, OsMYB103, MYB103
51974	35909754	Yang G., Wei X., Fang Z.	Melatonin Mediates axillary bud Outgrowth by Improving Nitrogen Assimilation and Transport in Rice.	Front Plant Sci	13	900262	2022	FC1,NPF6.5,GS2,CKX4,PP2C9,AAP7B,LOGL5	fc1, OsTB1, tb1, OsTB1/FC1, Os TB1, TB1, OsFC1, MP3, OsMP3,OsNRT1.1B, NRT1.1B, OsNPF6.5,OsGS2, GLN2, OsGLN2, RGS31, OsRGS31,OsCKX4, ckx4, OsSCRM, OsSCRM2, SCRM, SCRM2,OsPP15, PP15, OsPP2C09, PP2C09, OsPP2C9, OsPP2C3,OsAAP7B, OsAAP14, AAP14, OsAAP14a, OsAAP14b,  OsMBTB9, MBTB9,OsLOGL5
51975	35766344	Yin W., Li L., Yu Z., Zhang F., Liu D., Wu H., Niu M., Meng W., Zhang X., Dong N., Yang Y., Liu J., Liu Y., Zhang G., Xu J., Wang S., Chu C., Qian Q., Tong H.	The divergence of brassinosteroid sensitivity between rice subspecies involves natural variation conferring altered internal auto-binding of OsBSK2.	J Integr Plant Biol	64(8)	1614-1630	2022		
51976	35955626	Liang S., Xu S., Qu D., Yang L., Wang J., Liu H., Xin W., Zou D., Zheng H.	Identification and Functional Analysis of the Caffeic acid O-methyltransferase (COMT) Gene Family in Rice (<i>Oryza sativa</i> L.).	Int J Mol Sci	23(15)		2022	NOMT,COMT20,COMT25,ASMT3,ASMT5,COMT21,COMT32,ASMT11,COMT7,COMTL2,ASMT10,COMT33,COMT6,ASMT1,ASMT4,COMT22,COMT28,ASMT19,ASMT18,COMTL1,COMTL5,ASMT12,ASMT7,ROMT9,ASMT9,ASMT17,COMT1,ASMT6,COMT24,COMTL4,COMT23,COMTL6	OsNOMT, COMTL3, OsCOMTL3, OsCOMT29, COMT29,OMT, OsCOMT20,OsCOMT25,OsASMT3, OsCOMT8, COMT8,OsASMT5, OsCOMT10, COMT10,OsCOMT21,OsCOMT32,OsASMT11, OsCOMT17, COMT17,OsASMT2, ASMT2, OsCOMT7,OsCOMTL2, OsCOMT3, COMT3,OsASMT10, OsCOMT16, COMT16,OsCOMT33,OsCOMT6,ZRP4, OMT, ASMT, OsASMT, OsASMT1, ASMT1, OsASMT13, OsCOMT19, COMT19,ZRP4, OsASMT4, OsCOMT9, COMT9,OsCOMT22,OsCOMT28,OsASMT19, OsCOMT31, COMT31,OsASMT18, OsCOMT30, COMT30,OsCOMTL1, OsCOMT27, COMT27,OsCOMTL5, OsCOMT4, COMT4,OsASMT12, OsCOMT18, COMT18,OsASMT7, OsCOMT12, COMT12,COMT, OsCOMT, ROMT-9, OsCOMT1, OsCAldOMT1, CAldOMT1, OsOMT, OsCOMT15, COMT15,ASMT, OsASMT9, OsCOMT14, COMT14,OsASMT17, OsCOMT26, COMT26,OsASMT1, ASMT1, OsCOMT1,OsASMT6, OsCOMT11, COMT11,OsCOMT24,OsCOMTL4, COMT2, OsCOMT2,OsCOMT23,OsCOMTL6, OsCOMT5, COMT5
51977	35781561	Yu M., Huang D., Yin X., Liu X., Yang D., Gong C., Wang H., Wu Y.	The phosphoinositide-specific phospholipase C1 modulates flowering time and grain size.in rice.	Planta	256(2)	29	2022		
51978	35803541	Jia M., Luo N., Meng X., Song X., Jing Y., Kou L., Liu G., Huang X., Wang Y., Li J., Wang B., Yu H.	OsMPK4 promotes phosphorylation and degradation of IPA1 in response to salt stress to confer salt tolerance in rice.	J Genet Genomics	49(8)	766-775	2022		
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51980	35779128	Jiang M., Dai S., Zheng Y.C., Li R.Q., Tan Y.Y., Pan G., M?ller IM., Song S.Y., Huang J.Z., Shu Q.Y.	An alanine to valine mutation of glutamyl-tRNA reductase enhances 5-aminolevulinic acid synthesis in rice.	Theor. Appl. Genet.	135(8)	2817-2831	2022		
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51984	35863076	Kiswanto I., Soetopo L., Adiredjo A.L.	Identification of novel candidate of brown planthopper resistance gene <i>Bph44</i> in rice (<i>Oryza sativa</i> L.).	Genome	65(10)	505-511	2022		
51985	35862527	Wei S., Li X., Lu Z., Zhang H., Ye X., Zhou Y., Li J., Yan Y., Pei H., Duan F., Wang D., Chen S., Wang P., Zhang C., Shang L., Zhou Y., Yan P., Zhao M., Huang J., Bock R., Qian Q., Zhou W.	A transcriptional regulator that boosts grain yields and shortens the growth duration of rice.	Science	377(6604)	eabi8455	2022	NPF6.5,_,NRT2.4,DREB1C,RBCS3,FTL1	OsNRT1.1B, NRT1.1B, OsNPF6.5,OsNIA1, OsNia1, NIA1, Nia1, OsNR, NR, OsNR2, NR2, NIA2,OsNRT2.4,OsDREB1C, CBF1, ERF26, OsERF026, OsERF#026, OsERF26, AP2/EREBP#098, AP2/EREBP98, OsCBF2, CBF2,RbcS3, OsRBCS3, OsRbcS3, rbcS ,FTL, FT-L1, OsFTL1, FTL1
51986	35639755	Zheng X., Fang A., Qiu S., Zhao G., Wang J., Wang S., Wei J., Gao H., Yang J., Mou B., Cui F., Zhang J., Liu J., Sun W.	Ustilaginoidea virens secretes a family of phosphatases that stabilize the negative immune regulator OsMPK6 and suppress plant immunity.	Plant Cell	34(8)	3088-3109	2022		
51987	35258600	Kellogg E.A.	Genetic control of branching patterns in grass inflorescences.	Plant Cell	34(7)	2518-2533	2022	LAX2,FIB,ASP1,YUCCA1,MOC1,WFP,FZP,SPL17,LAX1	OsLAX2, Gnp4/LAX2, Gnp4,fib, OsFIB, OsTAR2, TAR2, TSG1, OsTSG1, OsTAA1, TAA1,OsLIS-L1, OsWD40-155, ASP1, TPR2, OsTPR2, OsREL2, REL2, OsTPL3, TPL3, OsTPL2, TPL2, ASP-LSL,OsYUCCA1, OsYUC1, YUC1,moc1, OsMOC1, OsGRAS-33, OsGRAS33, GRAS-33, GRAS33, GNP6, OsGNP6,OsSPL14, SPL14, IPA1, WFP/IPA1, OsSPL14/WFP/IPA1, OsIPA1,  IPA1/OsSPL14,fzp*, fzp, OsBD1, BD1, OsERF#078, OsERF078, OsERF78, ERF78, AP2/EREBP#133, AP2/EREBP133, BFL1, SGDP7, OsSGDP7,OsSPL17,lax, lax(lx), lx, OsbHLH123, bHLH123, OsLAX1, BOS1, OsBOS1
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51991	35940751	Zhao L., Duan X., Liu H., Zhang D., Wang Q., Liu J., Sun H.	A panel of lipid markers for rice discrimination of Wuchang Daohuaxiang in China.	Food Res. Int.	159	111511	2022		
51992	35722667	Bui M.Q., Quan T.C., Nguyen Q.T., Tran-Lam TT., Dao Y.H.	Geographical origin traceability of Sengcu rice using elemental markers and multivariate analysis.	Food Addit Contam Part B Surveill	15(3)	177-190	2022		
51993	35837462	Wahid M.A., Irshad M., Irshad S., Khan S., Hasnain Z., Ibrar D., Khan A.R., Saleem M.F., Bashir S., Alotaibi S.S., Matloob A., Farooq N., Ismail M.S., Cheema M.A.	Nitrogenous Fertilizer Coated With Zinc Improves the Productivity and Grain Quality of Rice Grown Under Anaerobic Conditions.	Front Plant Sci	13	914653	2022		
51994	35741403	Wang Y., Li R., Wang X., Liu X., Chen F.	Elevated CO2 Altered Rice VOCs Aggravate Population Occurrence of Brown Planthoppers by Improving Host Selection Ability.	Biology (Basel)	11(6)		2022		
51995	35838895	Pruthi R., Puram V.R.R., Ontoy J., Subudhi P.K.	Genetics of yield component traits under salt stress at flowering stage and selection of salt tolerant pre-breeding lines for rice improvement.	Genetica	150(5)	273-288	2022		
51996	35859804	Taratima W., Chomarsa T., Maneerattanarungroj P.	Salinity Stress Response of Rice (<i>Oryza sativa</i> L. cv. Luem Pua) Calli and Seedlings.	Scientifica (Cairo)	2022	5616683	2022		
51997	35877013	Hidayah A., Nisak R.R., Susanto F.A., Nuringtyas T.R., Yamaguchi N., Purwestri Y.A.	Seed Halopriming Improves Salinity Tolerance of Some Rice Cultivars During Seedling Stage.	Botanical Studies	63(1)	24	2022		
51998	35923872	Guo N., Wang Y., Chen W., Tang S., An R., Wei X., Hu S., Tang S., Shao G., Jiao G., Xie L., Wang L., Sheng Z., Hu P.	Fine mapping and target gene identification of <i>qSE4</i>, a QTL for stigma exsertion rate in rice (<i>Oryza sativa</i> L.).	Front Plant Sci	13	959859	2022		
51999	35876915	Zhao Z.X., Yin X.X., Li S., Peng Y.T., Yan X.L., Chen C., Hassan B., Zhou S.X., Pu M., Zhao J.H., Hu X.H., Li G.B., Wang H., Zhang J.W., Huang Y.Y., Fan J., Li Y., Wang W.M.	miR167d-ARFs module Regulates Flower Opening and Stigma Size in Rice.	Rice (N Y)	15(1)	40	2022		
52000	35819660	Malik P., Huang M., Neelam K., Bhatia D., Kaur R., Yadav B., Singh J., Sneller C., Singh K.	Genotyping-by-Sequencing Based Investigation of Population Structure and Genome Wide Association Studies for Seven Agronomically Important Traits in a Set of 346 Oryza rufipogon Accessions.	Rice (N Y)	15(1)	37	2022		
52001	35874029	Anandan A., Panda S., Sabarinathan S., Travis A.J., Norton G.J., Price A.H.	Superior Haplotypes for Early Root Vigor Traits in Rice Under Dry Direct Seeded Low Nitrogen Condition Through Genome Wide Association Mapping.	Front Plant Sci	13	911775	2022		
52002	35955515	Xu H., Li S., Kazeem B.B., Ajadi A.A., Luo J., Yin M., Liu X., Chen L., Ying J., Tong X., Wang Y., Niu B., Chen C., Zeng X., Zhang J.	Five Rice Seed-Specific <i>NF-YC</i> Genes Redundantly Regulate Grain Quality and Seed Germination via Interfering Gibberellin Pathway.	Int J Mol Sci	23(15)		2022		
52003	35968147	Rasheed A., Li H., Nawaz M., Mahmood A., Hassan M.U., Shah A.N., Hussain F., Azmat S., Gillani S.F.A., Majeed Y., Qari S.H., Wu Z.	Molecular tools, potential frontiers for enhancing salinity tolerance in rice: A critical review and future prospective.	Front Plant Sci	13	966749	2022		
52004	35809682	Huang J., Wu Q., Jing H.K., Shen R.F., Zhu X.F.	Auxin facilitates cell wall phosphorus reutilization in a nitric oxide-ethylene dependent manner in phosphorus deficient rice (Oryza sativa L.).	Plant Sci.	322	111371	2022		
52005	35897795	Cui Z., Xue C., Mei Q., Xuan Y.	Malectin Domain Protein Kinase (MDPK) Promotes Rice Resistance to Sheath Blight via IDD12, IDD13, and IDD14.	Int J Mol Sci	23(15)		2022		
52006	35634733	Xu P., Wu T., Ali A., Zhang H., Liao Y., Chen X., Tian Y., Wang W., Fu X., Li Y., Fan J., Wang H., Tian Y., Liu Y., Jiang Q., Sun C., Zhou H., Wu X.	EARLY MORNING FLOWERING1 (EMF1) regulates the floret opening time by mediating lodicule cell wall formation in rice.	Plant Biotechnol. J.	20(8)	1441-1443	2022		
52007	35878697	Baoxiang W., Bo X., Yan L., Jingfang L., Zhiguang S., Ming C., Yungao X., Bo Y., Jian L., Jinbo L., Tingmu C., Zhaowei F., Baiguan L., Dayong X., Bello B.K.	A Novel mechanisms of the signaling cascade associated with the SAPK10-bZIP20-NHX1 synergistic interaction to enhance tolerance of plant to abiotic stress in rice (Oryza sativa L.).	Plant Sci.	323	111393	2022		
52008	35910769	Zha W., Li S., Xu H., Chen J., Liu K., Li P., Liu K., Yang G., Chen Z., Shi S., Zhou L., You A.	Genome-wide identification of long non-coding (lncRNA) in <i>Nilaparvata lugens</i>'s adaptability to resistant rice.	PeerJ	10	e13587	2022		
52009	35940799	Wu N.N., Li R., Li Z.J., Tan B.	Effect of germination in the form of paddy rice and brown rice on their phytic acid, GABA, gamma-oryzanol, phenolics, flavonoids and antioxidant capacity.	Food Res. Int.	159	111603	2022		
52010	35906294	Roy U.K., Bhattacharjee S.	Exploring the parameters of central redox hub for screening salinity tolerant rice landraces of coastal Bangladesh.	Sci Rep	12(1)	12989	2022		
52011	35930937	Wang X., Yao Z., Huang H., Liang Y., Liu Y.	The long-term persistence of transgenic volunteers in wild mustard and rice populations.	Plant Physiol. Biochem.	186	252-256	2022		
52012	35873991	Sidhu G.S., Conner J.A., Ozias-Akins P.	Controlled Induction of Parthenogenesis in Transgenic Rice <i>via</i> Post-translational Activation of <i>PsASGR-BBML</i>.	Front Plant Sci	13	925467	2022		
52013	35968120	Sun Y., Fu M., Ang Y., Zhu L., Wei L., He Y., Zeng H.	Combined analysis of transcriptome and metabolome reveals that sugar, lipid, and phenylpropane metabolism are essential for male fertility in temperature-induced male sterile rice.	Front Plant Sci	13	945105	2022		
52014	35890465	Somaddar U., Dey H.C., Mim S.K., Sarker U.K., Uddin M.R., Ahmed N.U., Mostofa M.G., Saha G.	Assessing Silicon-Mediated Growth Performances in Contrasting Rice Cultivars under Salt Stress.	Plants (Basel)	11(14)		2022		
52015	35937342	Feng Z., Li M., Xu Z., Gao P., Wu Y., Wu K., Zhao J., Wang X., Wang J., Li M., Hu K., Chen H., Deng Y., Li A., Chen Z., Zuo S.	Development of Rice Variety With Durable and Broad-Spectrum Resistance to blast disease Through Marker-Assisted Introduction of <i>Pigm</i> Gene.	Front Plant Sci	13	937767	2022		
52016	35873955	Abd El-Aty MS., Katta Y.S., El-Abd AEMB., Mahmoud S.M., Ibrahim O.M., Eweda M.A., El-Saadony MT., AbuQamar SF., El-Tarabily KA., El-Tahan AM.	The Combining Ability for grain yield and Some Related Characteristics in Rice (<i>Oryza sativa</i> L.) Under Normal and Water Stress Conditions.	Front Plant Sci	13	866742	2022		
52017	35859217	Moon S., Kim Y.J., Park H.E., Kim J., Gho Y.S., Hong W.J., Kim E.J., Lee S.K., Suh B.C., An G., Jung K.H.	OsSNDP3 Functions for the Polar Tip Growth in Rice pollen Together with OsSNDP2, a Paralog of OsSNDP3.	Rice (N Y)	15(1)	39	2022		
52018	35799449	Hu J., Liu M., Zhang A., Dai Y., Chen W., Chen F., Wang W., Shen D., Telebanco-Yanoria MJ., Ren B., Zhang H., Zhou H., Zhou B., Wang P., Zhang Z.	Co-evolved plant and blast fungus ascorbate oxidases orchestrate the redox state of host apoplast to modulate rice immunity.	Mol Plant	15(8)	1347-1366	2022		
52019	35779161	Liu S., Bao Y., Deng H., Liu G., Han Y., Wu Y., Zhang T., Chen C.	The Methylation Inhibitor 5-Aza-2'-Deoxycytidine Induces Genome-Wide Hypomethylation in Rice.	Rice (N Y)	15(1)	35	2022		
52020	35910624	Iqbal A., Ali I., Yuan P., Khan R., Liang H., Wei S., Jiang L.	Combined Application of Manure and Chemical Fertilizers Alters Soil Environmental Variables and Improves Soil Fungal Community Composition and Rice grain yield.	Front Microbiol	13	856355	2022		
52021	35937336	Xia D., Wang Y., Shi Q., Wu B., Yu X., Zhang C., Li Y., Fu P., Li M., Zhang Q., Liu Q., Gao G., Zhou H., He Y.	Effects of <i>Wx</i> Genotype, Nitrogen Fertilization, and Temperature on Rice Grain Quality.	Front Plant Sci	13	901541	2022		
52022	35905895	Li Z., Ma R., Liu D., Wang M., Zhu T., Deng Y.	A straightforward plant prime editing system enabled highly efficient precise editing of rice Waxy gene.	Plant Sci.	323	111400	2022		
52023	35845107	Rathour R., Kumar R., Thakur K., Pote T.D.	Genetic improvement for blast resistance in high-yielding cold-tolerant rice (<i>Oryza sativa</i> L.) cultivar Himalaya 741 by marker-assisted backcross breeding.	3 Biotech	12(8)	165	2022		
52024	36101381	Jang Y.H., Park J.R., Kim E.G., Kim K.M.	<i>OsbHLHq11</i>, the Basic Helix-Loop-Helix Transcription Factor, Involved in Regulation of chlorophyll content in Rice.	Biology (Basel)	11(7)		2022		
52025	35906561	Luo H., Duan M., Xing P., Xie H., Tang X.	Foliar application of procyanidins enhanced the biosynthesis of 2-acetyl-1-pyrroline in aromatic rice (Oryza sativa L.).	BMC Plant Biol.	22(1)	376	2022		
52026	35821092	Shang L., Li X., He H., Yuan Q., Song Y., Wei Z., Lin H., Hu M., Zhao F., Zhang C., Li Y., Gao H., Wang T., Liu X., Zhang H., Zhang Y., Cao S., Yu X., Zhang B., Zhang Y., Tan Y., Qin M., Ai C., Yang Y., Zhang B., Hu Z., Wang H., Lv Y., Wang Y., Ma J., Wang Q., Lu H., Wu Z., Liu S., Sun Z., Zhang H., Guo L., Li Z., Zhou Y., Li J., Zhu Z., Xiong G., Ruan J., Qian Q.	A super pan-genomic landscape of rice.	Cell Res.	32(10)	878-896	2022	SUB1A,_,ACE1,SNK1,SHAT1,SNK2,SPD6,PROG1	Sub1A, Sub1A-1, Sub1A-2, OsSUB1A,qTGW1.2a,OsACE1, OsSIN, SIN,SK1, OsSK1, OsSNK1, SK1C9285,OsSHAT1, AP2/EREBP#043, AP2/EREBP43, AP2-5, DLN124, OsDLN124, ObSHAT1, OgSHAT1, OrSHAT1 ,SK2, OsSK2, OsSNK2,OsSPD6, spd6, OrSPD6,OsPROG1, ZOS7-02, OsZOS7-02
52027	35781905	Wu D., Hu Y., Akashi S., Nojiri H., Guo L., Ye C.Y., Zhu Q.H., Okada K., Fan L.	Lateral transfers lead to the birth of momilactone biosynthetic gene clusters in grass.	Plant J.	111(5)	1354-1367	2022		
52028	35903884	Chen Y., Luo L., Xu F., Xu X., Bao J.	Carbohydrate Repartitioning in the Rice <i>starch branching enzyme IIb</i> Mutant Stimulates Higher Resistant Starch Content and Lower seed weight Revealed by Multiomics Analysis.	J. Agric. Food Chem.	70(31)	9802-9816	2022		
52029	35797400	Pabuayon I.C.M., Pabuayon I.L.B., Singh R.K., Ritchie G.L., de Los Reyes BG.	Applicability of hyperspectral imaging during salinity stress in rice for tracking Na+ and K+ levels in planta.	PLoS ONE	17(7)	e0270931	2022		
52030	35871266	Sun X., Xiong H., Jiang C., Zhang D., Yang Z., Huang Y., Zhu W., Ma S., Duan J., Wang X., Liu W., Guo H., Li G., Qi J., Liang C., Zhang Z., Li J., Zhang H., Han L., Zhou Y., Peng Y., Li Z.	Natural variation of DROT1 confers drought adaptation in upland rice.	Nat Commun	13(1)	4265	2022		
52031	35897828	Liu Y., Yi J., Jia H., Miao Y., Hou M.	<i>Sogatella furcifera</i> Saliva Mucin-like Protein Is Required for Feeding and Induces Rice Defences.	Int J Mol Sci	23(15)		2022		
52032	35897779	Sun X., Zhang Z., Li J., Zhang H., Peng Y., Li Z.	Uncovering Hierarchical Regulation among MYB-bHLH-WD40 Proteins and Manipulating Anthocyanin Pigmentation in Rice.	Int J Mol Sci	23(15)		2022		
52033	35780402	Huang J., Chen Z., Lin J., Chen J., Wei M., Liu L., Yu F., Zhang Z., Chen F., Jiang L., Zheng J., Wang T., Chen H., Xie W., Huang S., Wang H., Huang Y., Huang R.	Natural variation of the BRD2 allele affects plant height and grain size.in rice.	Planta	256(2)	27	2022		
52034	35928709	Luo Z., Xiong J., Xia H., Wang L., Hou G., Li Z., Li J., Zhou H., Li T., Luo L.	Pentatricopeptide Repeat Gene-Mediated Mitochondrial RNA Editing Impacts on Rice drought tolerance.	Front Plant Sci	13	926285	2022	PPR406,PPR35,EMSA1,PRP1.4,RPS4,OCPI2,LEA17,ORFX,CYP94C2B,BSRD1	OsPPR406,OsPPR035, PPR035, OsPPR35,OsEMSA1 ,OsPRP1.4,rps4,OsSRO1a, SRO1a, CPI2, OsCPI2, OCPI1,OsLEA17, OsLEA3-2, LEA3-2, LEA1,orfX,OsCYP94C2b,ZFP36, OsZFP36, OsBSRD1, Bsr-d1, BSR-D1, DLN91, OsDLN91
52035	35937328	Han Z., Li F., Qiao W., Nong B., Cheng Y., Zhang L., Huang J., Wang Y., Lou D., Ge J., Xing M., Fan W., Nie Y., Guo W., Wang S., Liu Z., Li D., Zheng X., Yang Q.	Identification of candidate genes and clarification of the maintenance of the green pericarp of weedy rice grains.	Front Plant Sci	13	930062	2022		
52036	35893060	Li J., Kim Y.J., Zhang D.	Source-To-Sink Transport of Sugar and Its Role in Male Reproductive Development.	Genes (Basel)	13(8)		2022		
52037	35536598	Li W., Li M., Li S., Zhang Y., Li X., Xu G., Yu L.	Function of Rice High-Affinity Potassium Transporters in pollen Development and Fertility.	Plant Cell Physiol.	63(7)	967-980	2022		
52038	36005127	Huang C., Wang D., Chen H., Deng W., Chen D., Chen P., Wang J.	Genome-Wide Identification of DUF26 domain-Containing Genes in Dongxiang Wild Rice and Analysis of Their Expression Responses under Submergence.	Curr Issues Mol Biol	44(8)	3351-3363	2022		
52039	35865075	Yoon D.K., Suganami M., Ishiyama K., Kagawa T., Tanaka M., Nagao R., Takagi D., Ishida H., Suzuki Y., Mae T., Makino A., Obara M.	The <i>gs3</i> allele from a large-grain rice cultivar, Akita 63, increases yield and improves nitrogen-use efficiency.	Plant Direct	6(7)	e417	2022		
52040	35955484	Fang Y., Yang J., Guo X., Qin Y., Zhou H., Liao S., Liu F., Qin B., Zhuang C., Li R.	CRISPR/Cas9-Induced Mutagenesis of <i>tms5</i> Confers Thermosensitive Genic male sterility by Influencing Protein Expression in Rice (<i>Oryza sativa</i> L.).	Int J Mol Sci	23(15)		2022		
52041	35909789	Kapadia C., Patel N., Rana A., Vaidya H., Alfarraj S., Ansari M.J., Gafur A., Poczai P., Sayyed R.Z.	Evaluation of Plant Growth-Promoting and Salinity Ameliorating Potential of Halophilic Bacteria Isolated From Saline Soil.	Front Plant Sci	13	946217	2022		
52042	35958207	Ashraf U., Mahmood S., Anjum S.A., Abbas R.N., Rasul F., Iqbal J., Mo Z., Tang X.	Exogenous Gamma-Aminobutyric Acid Application Induced Modulations in the Performance of Aromatic Rice Under Lead Toxicity.	Front Plant Sci	13	933694	2022		
52043	35867109	Li X., Li R., Yuan Z., Zhu Z., Xu W., Wang Y., Zhang D., Yang L.	One Versatile Cas9-Integrated Single-Tube Duplex Quantitative Real-Time PCR System for Rapid Analysis of CRISPR/Cas-Induced Mutants.	Anal. Chem.	94(30)	10832-10840	2022		
52044	35579477	Li G., Zhou C., Yang Z., Zhang C., Dai Q., Huo Z., Xu K.	Low Nitrogen Enhances Apoplastic Phloem Loading and Improves the Translocation of Photoassimilates in Rice Leaves and Stems.	Plant Cell Physiol.	63(7)	991-1007	2022		
52045	35914717	Min C.W., Jang J.W., Lee G.H., Gupta R., Yoon J., Park H.J., Cho H.S., Park S.R., Kwon S.W., Cho L.H., Jung K.H., Kim Y.J., Wang Y., Kim S.T.	TMT-based quantitative membrane proteomics identified PRRs potentially involved in the perception of MSP1 in rice leaves.	J Proteomics	267	104687	2022		
52046	35806444	Ma Y., Yang J., Dong J., Zhang S., Yang W., Zhao J., Yang T., Chen L., Zhou L., Wang J., Chen J., Li W., Wu W., Liu Q., Liu B.	Overexpression of <i>OsGF14f</i> Enhances Quantitative Leaf Blast and Bacterial Blight Resistance in Rice.	Int J Mol Sci	23(13)		2022		
52047	35968148	Chen Y., Liu Y., Ge J., Li R., Zhang R., Zhang Y., Huo Z., Xu K., Wei H., Dai Q.	Improved physiological and morphological traits of root synergistically enhanced salinity tolerance in rice under appropriate nitrogen application rate.	Front Plant Sci	13	982637	2022		
52048	35923884	Guo Z., Wang H., Yao J., Cheng Y., Zhang W., Xu Z., Li M., Huang J., Zhao M.	Quantitative Trait Loci Mapping Analysis for cold tolerance Under Cold Stress and Brassinosteroid-Combined Cold Treatment at Germination and Bud Burst Stages in Rice.	Front Plant Sci	13	938339	2022		
52049	35899197	Ishwarya Lakshmi VG., Sreedhar M., JhansiLakshmi V., Gireesh C., Rathod S., Bohar R., Deshpande S., Laavanya R., Kiranmayee KNSU., Siddi S., Vanisri S.	Development and Validation of Diagnostic KASP Markers for Brown Planthopper Resistance in Rice.	Front Genet	13	914131	2022		
52050	35937377	M?ller SR., Lancefield C.S., Oates N.C., Simister R., Dowle A., Gomez L.D., McQueen-Mason SJ.	CRISPR/Cas9 suppression of OsAT10, a rice BAHD acyltransferase, reduces p-coumaric acid incorporation into arabinoxylan without increasing saccharification.	Front Plant Sci	13	926300	2022		
52051	35886780	Vu Q., Dossa G.S., Mundaca E.A., Settele J., Crisol-Mart?nez E., Horgan F.G.	Combined Effects of Soil Silicon and Host Plant Resistance on Planthoppers, Blast and Bacterial Blight in Tropical Rice.	Insects	13(7)		2022		
52052	35956435	Wang L., Xu D., Zeng L., Yang D.L.	The Rise and Fall of Billionaire siRNAs during Reproductive Development in Rice.	Plants (Basel)	11(15)		2022		
52053	35874017	Dai S.F., Zhu X.G., Hutang G.R., Li J.Y., Tian J.Q., Jiang X.H., Zhang D., Gao L.Z.	Genome Size Variation and Evolution Driven by Transposable Elements in the Genus <i>Oryza</i>.	Front Plant Sci	13	921937	2022		
52054	35966273	Salleh M.S., Nordin M.S., Puteh A., Shahari R., Zainuddin Z., Ab-Ghaffar MB., Abd Aziz Shamsudin N.	Drought-Induced Changes in The Flowering Capacity, Anthesis Quality and Seed Set in Rice (<i>Oryza sativa</i> L.).	Tropical Life Sciences Research	33(2)	239-256	2022		
52055	35903237	Zin Mar Myint, Koide Y.	Influence of Gender Bias on Distribution of hybrid sterility in Rice.	Front Plant Sci	13	898206	2022		
52056	35776788	Yao S., Kang J., Guo G., Yang Z., Huang Y., Lan Y., Zhou T., Wang L., Wei C., Xu Z., Li Y.	The key micronutrient copper orchestrates broad-spectrum virus resistance in rice.	Sci Adv	8(26)	eabm0660	2022		
52057	35893634	Kallugudi J., Singh V.J., Vinod K.K., Krishnan S.G., Nandakumar S., Dixit B.K., Ellur R.K., Bollinedi H., Nagarajan M., Kumar A., Chakraborti M., Seth R.K., Mondal T.K., Bhowmick P.K., Singh A.K.	Population Dynamics of Wide Compatibility System and Evaluation of Intersubspecific Hybrids by <i>indica</i>-<i>japonica</i> Hybridization in Rice.	Plants (Basel)	11(15)		2022		
52058	35898226	Yang S., Zhang C., Cao Y., Du G., Tang D., Li Y., Shen Y., Yu H., Cheng Z.	FIGNL1 Inhibits Non-homologous Chromosome Association and Crossover Formation.	Front Plant Sci	13	945893	2022		
52059	36101403	Muthuramalingam P., Jeyasri R., Rakkammal K., Satish L., Shamili S., Karthikeyan A., Valliammai A., Priya A., Selvaraj A., Gowri P., Wu Q.S., Karutha Pandian S., Shin H., Chen J.T., Baskar V., Thiruvengadam M., Akilan M., Ramesh M.	Multi-Omics and Integrative Approach towards Understanding Salinity Tolerance in Rice: A Review.	Biology (Basel)	11(7)		2022		
52060	35909737	Younas A., Yousaf Z., Riaz N., Rashid M., Aftab A., Fiaz S., Shamsheer B., Huang S.	Effect of Qiangdi 863 Nanosynergids Treated Water, Nitrogen, Phosphorous and Potassium Fertilizers on Rice Growth Physiology and Grain Quality.	Front Plant Sci	13	916949	2022		
52061	35598893	Shaw B.P., Sekhar S., Panda B.B., Sahu G., Chandra T., Parida A.K.	Genes determining panicle morphology and grain quality in rice (<i>Oryza sativa</i>).	Funct. Plant Biol.	49(8)	673-688	2022		
52062	35790849	Xu W., Zhang H., Zhang Y., Shen P., Li X., Li R., Yang L.	A paired-end whole-genome sequencing approach enables comprehensive characterization of transgene integration in rice.	Commun Biol	5(1)	667	2022		
52063	35909772	Li Z., Gao J., Wang B., Xu J., Fu X., Han H., Wang L., Zhang W., Deng Y., Wang Y., Gong Z., Tian Y., Peng R., Yao Q.	Rice carotenoid biofortification and yield improvement conferred by endosperm-specific overexpression of <i>OsGLK1</i>.	Front Plant Sci	13	951605	2022		
52064	35968137	Gandass N., Kajal, Salvi P.	Intrinsically disordered protein, DNA binding with one finger transcription factor (<i>OsDOF27</i>) implicates thermotolerance in yeast and rice.	Front Plant Sci	13	956299	2022		
52065	35881571	Barik S.R., Pandit E., Sanghamitra P., Mohanty S.P., Behera A., Mishra J., Nayak D.K., Bastia R., Moharana A., Sahoo A., Pradhan S.K.	Unraveling the genomic regions controlling the seed vigour index, root growth parameters and germination per cent in rice.	PLoS ONE	17(7)	e0267303	2022		
52066	35890442	Yabe A., Nishikawa S.I.	Expression of GEX1 Orthologs of <i>Brassica rapa</i> and <i>Oryza sativa</i> Rescued the Nuclear Fusion Defect of the Arabidopsis GEX1 Mutant.	Plants (Basel)	11(14)		2022	GEX1	OsGEX1
52067	35836377	Wang Y., Wang Y., Zhu X., Ren Y., Dong H., Duan E., Teng X., Zhao H., Chen R., Chen X., Lei J., Yang H., Tian Y., Chen L., Liu X., Liu S., Jiang L., Wang H., Wan J.	Tetrapyrrole biosynthesis pathway regulates plastid-to-nucleus signaling by controlling plastid gene expression in plants.	Plant Commun		100411	2022		
52068	35888167	Tamura K., Bono H.	Meta-Analysis of RNA Sequencing Data of Arabidopsis and Rice under Hypoxia.	Life (Basel)	12(7)		2022	LBD40,WRKY24,WRKY76,_,WRKY113,BURP7,FBOX316,WRKY21,NPP1	OsLBD40,OsWRKY24,OsWRKY76, OsWRKY76.1, OsWRKY76.2, OsWRKY76.3,OsC4H, C4H ,OsWRKY113,OsBURP07, OsBURP7,OsFbox316, Fbox316, Os_F0624, OsEBF1, EBF1,  OsFBL30, FBL30,OsWRKY21,OsNPP1, OsPAP27b, PAP27B
52069	35908726	Xu Q., Wang Y., Chen Z., Yue Y., Huang H., Wu B., Liu Y., Zhou D.X., Zhao Y.	ROS-stimulated protein lysine acetylation is required for crown root development in rice.	Journal of Advanced Research			2022		
52070	35958208	Lee S.B., Kim G.J., Shin J.D., Chung W., Park S.K., Choi G.H., Park S.W., Park Y.J.	Genome-Scale Profiling and High-Throughput Analyses Unravel the Genetic Basis of Arsenic Content Variation in Rice.	Front Plant Sci	13	905842	2022	NIP1;1,MATE2,HAC4,ARM1,GRX4,NIP3;2,ACR2.1,AIR2,RCS3	OsNIP1;1, NIP1-1, rMIP1, MIP1, OsNIP1.1, NIP1.1,OsMATE2,OsStr8, STR8, OsHAC4,OsMYB-1, MYB-1, MYB1, OsARM1, Os2R_MYB56, 2R_MYB56, OsMYBxoc1, MYBxoc1,OsGRX4, OsGrx_C7, Grx_C7,OsNIP3;2, NIP3-2, OsNIP3.2, NIP3.2,CDC25.1, OsACR2.1, OsStr20, STR20,OsRFP, RFP, OsAIR2 ,  OsRING271, RING271,rcs3, OsRCS3, OsOASTL-A1, OASTL-A1
52071	35889518	Shao Y., Zhu D., Yu J., Fang C., Mou R., Hu X., Zhu Z., Chen M.	Development of Certified Reference Materials for the Determination of Apparent amylose content in Rice.	Molecules	27(14)		2022		
52072	35917836	Rokonuzzaman M.D., Ye Z., Wu C., Li W.	Arsenic accumulation in rice: Alternative irrigation regimes produce rice safe from arsenic contamination.	Environ. Pollut.	310	119829	2022		
52073	36076393	Xiong Q., Zhang J., Shi Q., Zhang Y., Sun C., Li A., Lu W., Hu J., Zhou N., Wei H., Wang S., Zhang H., Zhu J.	The key metabolites associated with nutritional components in purple glutinous rice.	Food Res. Int.	160	111686	2022		
52074	35968087	Shiono K., Koshide A., Iwasaki K., Oguri K., Fukao T., Larsen M., Glud R.N.	Imaging the snorkel effect during submerged germination in rice: Oxygen supply via the coleoptile triggers seminal root emergence underwater.	Front Plant Sci	13	946776	2022		
52075	35955422	Gu H., Zhang K., Gull S., Chen C., Ran J., Zou B., Wang P., Liang G.	Fine Mapping of <i>qTGW7b</i>, a Minor Effect QTL for grain weight in Rice (<i>Oryza sativa</i> L.).	Int J Mol Sci	23(15)		2022		
52076	35937323	Huang C., Li W., Zhang Z., Hua X., Yang J., Ye J., Duan L., Liang X., Yang W.	An Intelligent Rice yield trait Evaluation System Based on Threshed Panicle Compensation.	Front Plant Sci	13	900408	2022		
52077	35926283	?lvarez-Robles MJ., Clemente R., Ferrer M.A., Calder?n A., Bernal M.P.	Effects of ascorbic acid addition on the oxidative stress response of Oryza sativa L. plants to As(V) exposure.	Plant Physiol. Biochem.	186	232-241	2022		
52078	35930936	Sahoo R.K., Chandan R.K., Swain D.M., Tuteja N., Jha G.	Heterologous overexpression of PDH45 gene of pea provides tolerance against sheath blight disease and drought stress in rice.	Plant Physiol. Biochem.	186	242-251	2022		
52079	35816106	Mao Y., Tan H., Wang M., Jiang T., Wei H., Xu W., Jiang Q., Bao H., Ding Y., Wang F., Zhu C.	Research Progress of Soil Microorganisms in Response to Heavy Metals in Rice.	J. Agric. Food Chem.	70(28)	8513-8522	2022		
52080	35850283	Lv Y., Wang Y., Zhang Q., Chen C., Qian Q., Guo L.	WAL3 encoding a PLS-type PPR protein regulates chloroplast development in rice.	Plant Sci.	323	111382	2022	WAL3	OsWAL3
52081	35869123	Liu Y., Han S., Yang S., Chen Z., Yin Y., Xi J., Liu Q., Yan W., Song X., Zhao F., Guo J., Liu X., Hao D.	Engineered chimeric insecticidal crystalline protein improves resistance to lepidopteran insects in rice (Oryza sativa L.) and maize (Zea mays L.).	Sci Rep	12(1)	12529	2022		
52082	36051234	Chen M., He X., Huang X., Lu T., Zhang Y., Zhu J., Yu H., Luo C.	Cis-element amplified polymorphism (CEAP), a novel promoter- and gene-targeted molecular marker of plants.	Physiol Mol Biol Plants	28(7)	1407-1419	2022		
52083	35914330	Saha J., Gupta S.	Molecular characterization, evolutionary and phylogenetic analyses of rice ACT/BAT-type amino acid transporters.	Comput Biol Chem	100	107745	2022		
52084	35863676	Dasgupta P., Prasad P., Bag S.K., Chaudhuri S.	Dynamicity of histone H3K27ac and H3K27me3 modifications regulate the cold-responsive gene expression in Oryza sativa L. ssp. indica.	Genomics	114(4)	110433	2022		
52085	35781879	Onda Y., Okino T.	Thiol-disulfide oxidoreductase PDI1;1 regulates actin structures in Oryza sativa root cells.	FEBS Lett.			2022		
52086	35778686	Hill M.J., Penning B.W., McCann M.C., Carpita N.C.	COMPILE: a GWAS computational pipeline for gene discovery in complex genomes.	BMC Plant Biol.	22(1)	315	2022		
52087	35776138	Bai S., Hong J., Su S., Li Z., Wang W., Shi J., Liang W., Zhang D.	Genetic basis underlying tiller angle in rice (Oryza sativa L.) by genome-wide association study.	Plant Cell Rep.	41(8)	1707-1720	2022		
52088	35958195	Yamamoto N., Tong W., Lv B., Peng Z., Yang Z.	The Original Form of C4-Photosynthetic Phospho<i>enol</i>pyruvate carboxylase Is Retained in Pooids but Lost in Rice.	Front Plant Sci	13	905894	2022	PPC2A,PPC2,PPC4,PPC2B,PPPCB,PEPC1	Osppc, OSPPC, Osppc2a, ppc2a,Osppc3, Osppc2, ppc3,ppc2,PEPC-2, Osppc4, ppc4,Osppc2b, ppc2b,Osppc-b, OsSTA1, ppc-b, STA1, BTPC, OsBTPC,PEPC-1, Osppc1, ppc1
52089	35955535	Feng Y., Luo Z., Huang R., Yang X., Cheng X., Zhang W.	Epigenomic Features and Potential Functions of K+ and Na+ Favorable DNA G-Quadruplexes in Rice.	Int J Mol Sci	23(15)		2022		
52090	35879664	Li J., Zhao T., Chen L., Chen H., Luo D., Chen C., Miao Y., Liu D.	Artemisia argyi allelopathy: a generalist compromises hormone balance, element absorption, and photosynthesis of receptor plants.	BMC Plant Biol.	22(1)	368	2022	GIF1,BAMY2,YGL10,_,RSUS6,IAA1,CP24,GNP1,RSUS5,RSUS4,RSUS1,BAMY1,NCED3,YL1,PYL/RCAR5,PSBY,SLR1,CIN1,YGL98,YGL1,SBE1,YUCCA4,CHLH,HEMA	gif1, CIN2, OsCIN2, OsGIF1, WB1, OsWB1, GIF1/OsCIN2,OsBamy2, Bamy2, OsBmy3, Bmy3, OsBMY4, BMY4,CAO, OsCAO, CAO1, OsCAO1, Oslls1, Lls1, DVR, PGL,,SUS6, SS6, OsScS6, RSs6, RSus6, OsSUS6,OsIAA1, OsIAA4,Lhcb6, OsCP24, OsLhcb6,GA20OX1, OsGA20ox1, 20ox1, GA20ox-1, ga20ox1, Os20ox, C20OX2, OsGA20ox2, OsGA20ox-1, GA20ox1, OsGNP1,SUS5, SS5, OsScS5, RSs5, RSus5, OsSUS5,SUS4, SS4, OsScS4, RSs4, RSus4, OsSUS4,sus1, RSus1(t), SUS1, SS2, OsScS2, RSs2, RSus1, SuSy1, OsSUS1, RSS2, RSus2, OsRSUS1,OsSTA246, STA246, OsBamy1, Bamy1, BAM2, OsBAM2, OsBmy9, Bmy9, BMY5, OsBMY5,OSNCED3, OsNCED-3, OsNCED3, OsNCED3a, NCED3a, OsNCED4, NCED4, OsNECD2, OsNCED2b, NCED2b ,MTC, OsMTC, YGL8, OsYGL8, OsCRD1, CRD1, OsCRD, CRD, YL-1, PNZIP, OsPNZIP,OsPYL/RCAR5, PYL5, OsPYL5, OsPYL11, PYL11,PsbY, OsPSBY,slr1-1, slr1, slr, GAI, OsGAI, OsSLR1, Os SLR1, OsRGA1, OsGRAS-18, OsGRAS-18, GRAS-18, GRAS18, SLR-1,OSCIN1, OsCIN1,OsChlD, ChlD, CHLD, OsCHLD, Ygl7, YGL3, OsvWA12, vWA12,OsYGL1, CHLG, Ygl1, CS, OsCHLG,sbe1, Rbe1. Sbe1, sbe1*(QEI), RBE1, BEI, SBE I, QEI, OsBEI, BE1, OsSBE1, OsSBEI, SBEI,OsYUCCA4, OsYUC4, YUC4, YUCCA6, OsYUCCA6,OsChlH, ChlH, OsCHLH,HEMA1, OsHEMA, GluTR, OsHEMA1, hemA
52091	36077110	Lu R., Liu J., Wang X., Song Z., Ji X., Li N., Ma G., Sun X.	Chromosome-Level Genome Assembly of a Fragrant <i>Japonica</i> Rice Cultivar 'Changxianggeng 1813' Provides Insights into Genomic Variations between Fragrant and Non-Fragrant <i>Japonica</i> Rice.	Int J Mol Sci	23(17)		2022		
52092	35973769	Li J., Li Y., Fang F., Xue D., Li R., Gao X., Li M.	A novel naturally Phe206Tyr mutation confers tolerance to ALS-inhibiting herbicides in Alopecurus myosuroides.	Pestic Biochem Physiol	186	105156	2022		
52093	35969741	Jiang H., Lu Q., Qiu S., Yu H., Wang Z., Yu Z., Lu Y., Wang L., Xia F., Wu Y., Li F., Zhang Q., Liu G., Song D., Ma C., Ding Q., Zhang X., Zhang L., Zhang X., Li X., Zhang J., Xiao J., Li X., Wang N., Ouyang Y., Zhou F., Zhang Q.	Fujian cytoplasmic male sterility and the fertility restorer gene <i>OsRf19</i> provide a promising breeding system for hybrid rice.	Proc. Natl. Acad. Sci. U.S.A.	119(34)	e2208759119	2022	ORF182,RF19	orf182, OsFA182, FA182,OsRf19, Rf19
52094	36138761	Safari Motlagh MR., Jahangiri B., Kulus D., Tymoszuk A., Kaviani B.	Endophytic Fungi as Potential Biocontrol Agents against <i>Rhizoctonia solani</i> J.G. K?hn, the Causal Agent of Rice Sheath Blight Disease.	Biology (Basel)	11(9)		2022		
52095	35978638	Atabayeva S.D., Rakhymgozhina A.B., Nurmahanova A.S., Kenzhebayeva S.S., Usenbekov B.N., Alybayeva R.A., Asrandina S.S., Tynybekov B.M., Amirova A.K.	Rice Plants (<i>Oryza sativa</i> L.) under Cd Stress in Fe Deficiency Conditions.	Biomed Res Int	2022	7425085	2022		
52096	36040502	Chakraborty S., Singh A., Roychoudhury A.	Extensive cross-talk among stress-regulated protective metabolites, biogenic-amines and phytohormone-signalling, co-ordinated by dopamine-mediated seed-priming, governs tolerance against fluoride stress in rice.	Plant Cell Rep.			2022		
52097	36012754	Dai D., Zhang H., He L., Chen J., Du C., Liang M., Zhang M., Wang H., Ma L.	<i>Panicle Apical Abortion 7</i> Regulates Panicle Development in Rice (<i>Oryza sativa</i> L.).	Int J Mol Sci	23(16)		2022	OSH1,SST,LAX2,YUCCA2,HOX28,YUCCA6,YUCCA5,HOX1,FZP,FTIP7	OSKN1, Oskn1, OsKN1, OSH1/Oskn1, HB75,OsSPL10, SPL10, OsSST, SST/OsSPL10,OsLAX2, Gnp4/LAX2, Gnp4,OsYUCCA2, OsYUC2, YUC2,Oshox28, OsHox28, OsHDZ18, OsHDZIP18, HDZ18, HDZIP18,OsYUCCA6, OsYUC6, YUC6,OsYUCCA5, OsYUC5, YUC5,Oshox1, OsHox1, OsHDZ38, OsHDZIP38, HDZ38, HDZIP38,fzp*, fzp, OsBD1, BD1, OsERF#078, OsERF078, OsERF78, ERF78, AP2/EREBP#133, AP2/EREBP133, BFL1, SGDP7, OsSGDP7,OsFTIP7, OsC2DP44, C2DP44
52098	35963041	Shen Y., Chen M., Hong J., Xiong W., Xiong H., Wu X., Hu L., Xiao Y.	Identification and characterization of tsyl1, a thermosensitive chlorophyll-deficient mutant in rice (Oryza sativa).	J. Plant Physiol.	277	153782	2022		
52099	35943623	Pathania S., Lore J.S., Kalia A., Kaur A., Sharma M., Mangat G.S., Sandhu J.S.	Conversion of sheath blight susceptible indica and japonica rice cultivars into moderately resistant through expression of antifungal beta-1,3-glucanase transgene from Trichoderma spp.	Transgenic Res.	31(4-5)	537-551	2022		
52100	35994211	Janthabut T., Tristianto C., Sakulkoo J., Sunvittayakul P., Suttangkakul A., Gomez L.D., Vuttipongchaikij S., Sakulsingharoj C.	Effects of CRISPR/Cas9 generated drooping leaf (DL) alleles on midrib and carpel formations in Oryza sativa Nipponbare.	Planta	256(3)	61	2022		
52101	36057532	Jiang L., Ji Q., Liu Y.	Change of wind: MKP1 positively regulates vascular immunity.	Trends Plant Sci.	27(12)	1193-1195	2022		
52102	36147240	Zhao J., Jiang L., Bai H., Dai Y., Li K., Li S., Wang X., Wu L., Fu Q., Yang Y., Dong Q., Yu S., Wang M., Liu H., Peng Z., Zhu H., Zhang X., He X., Lei Y., Liang Y., Guo L., Zhang H., Yu D., Liu Y., Huang H., Liu C., Peng S., Du Y.	Characteristics of members of IGT family genes in controlling rice root system architecture and tiller development.	Front Plant Sci	13	961658	2022		
52103	35972350	Yang J., Mathew I.E., Rhein H., Barker R., Guo Q., Brunello L., Loreti E., Barkla B.J., Gilroy S., Perata P., Hirschi K.D.	The vacuolar H+/Ca transporter cax1 participates in submergence and anoxia stress responses.	Plant Physiol.			2022		
52104	35522026	Sun M., Shen Y., Chen Y., Wang Y., Cai X., Yang J., Jia B., Dong W., Chen X., Sun X.	Osa-miR1320 targets the ERF transcription factor OsERF096 to regulate cold tolerance via JA-mediated signaling.	Plant Physiol.	189(4)	2500-2516	2022		
52105	36192868	Chen X., Yang Y., Yang X., Zhu G., Lu X., Jia F., Diao B., Yu S., Ali A., Zhang H., Xu P., Liao Y., Sun C., Zhou H., Liu Y., Wang Y., Zhu J., Xiang Q., Wu X.	Investigation of flavonoid components and their associated antioxidant capacity in different pigmented rice varieties.	Food Res. Int.	161	111726	2022		
52106	35789063	Zhang S., Deng L., Zhao L., Wu C.	Genome-wide binding analysis of transcription factor Rice Indeterminate 1 reveals a complex network controlling rice floral transition.	J Integr Plant Biol	64(9)	1690-1705	2022		
52107	36015448	Aziz S., Germano T.A., Thiers K.L.L., Batista M.C., de Souza Miranda R., Arnholdt-Schmitt B., Costa J.H.	Transcriptome Analyses in a Selected Gene Set Indicate Alternative Oxidase (AOX) and Early Enhanced Fermentation as Critical for Salinity Tolerance in Rice.	Plants (Basel)	11(16)		2022		
52108	36012571	Wu S., Fang C., Li Z., Wang Y., Pan S., Wu Y., An X., Long Y., Wan X.	ATP-Binding Cassette G Transporters and Their Multiple Roles Especially for Male Fertility in <i>Arabidopsis</i>, Rice and Maize.	Int J Mol Sci	23(16)		2022		
52109	35942609	Li R., Zheng W., Yang R., Hu Q., Ma L., Zhang H.	OsSGT1 promotes melatonin-ameliorated seed tolerance to chromium stress by affecting the OsABI5-OsAPX1 transcriptional module in rice.	Plant J.	112(1)	151-171	2022		
52110	35991390	Lu Y., Chuan M., Wang H., Chen R., Tao T., Zhou Y., Xu Y., Li P., Yao Y., Xu C., Yang Z.	Genetic and molecular factors in determining grain number per panicle of rice.	Front Plant Sci	13	964246	2022		
52111	35971724	Yang J.Y., Sun M.Q., Xiao Y.T., Wei H., Zhang J.Q., Chen Z.L.	[Effect of Modified Chitosan Loaded with Silica on Arsenic Uptake and Transport in Rice].	Huan Jing Ke Xue	43(8)	4282-4291	2022		
52112	36077206	Biswas S., Bridgeland A., Irum S., Thomson M.J., Septiningsih E.M.	Optimization of Prime Editing in Rice, Peanut, Chickpea, and Cowpea Protoplasts by Restoration of GFP Activity.	Int J Mol Sci	23(17)		2022		
52113	35912411	Wang X., Zhou T., Li G., Yao W., Hu W., Wei X., Che J., Yang H., Shao L., Hua J., Li X., Xiao J., Xing Y., Ouyang Y., Zhang Q.	A Ghd7-centered regulatory network provides a mechanistic approximation to optimal heterosis in an elite rice hybrid.	Plant J.	112(1)	68-83	2022		
52114	36000692	Alnamshan M.M.	Antioxidant extract of black rice prevents renal dysfunction and renal fibrosis caused by ethanol-induced toxicity.	Braz J Biol	82	e261874	2022		
52115	35877598	Votta C., Fiorilli V., Haider I., Wang J.Y., Balestrini R., Pet??k I., Tarkowsk? D., Nov?k O., Serikbayeva A., Bonfante P., Al-Babili S., Lanfranco L.	Zaxinone synthase controls arbuscular mycorrhizal colonization level in rice.	Plant J.	111(6)	1688-1700	2022	SMAX1,D17,PT11,ZAS,SLB2,KAI2,D10	OsSMAX1,d17(t), dwf14, d17, htd1, OsCCD7, CCD7, D17/HTD1, HTD1, OsHTD1, OsD17,OsPT11, PHT1-11, OsPht1;11, ORYsa;PHT1;11,OsZAS, OsCCD8e, CCD8e ,CYP711A1, OsCYP711A1, Os1400/CYP711A3, Os1400, CYP711A3, OsCYP711A3, OsMAX1-1400, MAX1-1400,D14L, OsD14L, OsKAI2,d10(d15,d16), d16, d15, dwf9, d10, OsCCD8b, OsCCD8, CCD8, OsD10
52116	35927103	Zhang A., Yang X., Lu J., Song F., Sun J., Wang C., Lian J., Zhao L., Zhao B.	Corrigendum to "OsIAA20, an Aux/IAA protein, mediates abiotic stress tolerance in rice through an ABA pathway" [Plant Sci. 308 (2021) 110903].	Plant Sci.	323	111403	2022		
52117	35984536	Nene T., Yadav M., Yadav H.S.	Plant Catalase in silico characterization and phylogenetic analysis with structural modeling.	J Genet Eng Biotechnol	20(1)	125	2022		
52118	35957505	Xiang Z., Okada D., Asuke S., Nakayashiki H., Ikeda K.	Novel insights into host specificity of Pyricularia oryzae and Pyricularia grisea in the infection of gramineous plant roots.	Mol. Plant Pathol.	23(11)	1658-1670	2022		
52119	36072317	Wang Q., Kong L., Huang Q., Li H., Wan Y.	Uptake and translocation mechanisms of different forms of organic selenium in rice (<i>Oryza sativa</i> L.).	Front Plant Sci	13	970480	2022		
52120	35974262	Kara K., G??l? BK., Baytok E.	The effect of age and processing on the in vitro fermentation of fibrous feedstuffs by labrador retriever dogs.	Vet. Res. Commun.			2022		
52121	36038026	Zhou Z., Li H., Wei R., Li D., Lu W., Weng Z., Yang Z., Guo Y., Lin Y., Chen H.	RNA-seq reveals transcriptional differences in anthocyanin and vitamin biosynthetic pathways between black and white rice.	Gene	844	146845	2022		
52122	35920921	Zhu Z., Wang T., Lan J., Ma J., Xu H., Yang Z., Guo Y., Chen Y., Zhang J., Dou S., Yang M., Li L., Liu G.	Rice MPK17 Plays a Negative Role in the Xa21-Mediated Resistance Against Xanthomonas oryzae pv. oryzae.	Rice (N Y)	15(1)	41	2022	XA21,WRKY62,MPK17,PR1A	Xa21*, Xa21, OsXA21,OsWRKY62, OsWRKY62.1, OsWRKY62.2, XB10, OsWRKY62-1, OsWRKY62-2,OsMPK17, OsMPK21-1, MPK21-1,OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1, OsPR1b, PR1alpha, OsPR1alpha
52123	35955958	Son S., Im J.H., Song G., Nam S., Park S.R.	OsWRKY114 Inhibits ABA-Induced Susceptibility to <i>Xanthomonas oryzae</i> pv. <i>oryzae</i> in Rice.	Int J Mol Sci	23(15)		2022		
52124	36077191	Shaikh A.A., Alamin A., Jia C., Gong W., Deng X., Shen Q., Hong Y.	The Examination of the Role of Rice Lysophosphatidic Acid Acyltransferase 2 in Response to Salt and Drought Stresses.	Int J Mol Sci	23(17)		2022	SLAC1,PT5,NAC139,PLDalpha4,APL,AAO,PPLAIITHETA,ASR4,PFK6,PLC4,LPAT4,SKIN2,LPAT5,LPAT2,LPAT1,LPAT3,LOX11,JMT1	OsSLAC1, OsSLAH1, SLAH1,OsPT5, OsPht1;5, Pht1;5, PHT1-5,ONAC139, OsNAM,OsPLDalpha4, RPLD3, OsPLDeta2, OsC2DP50, C2DP50,OsAPL,OsAAO, OsAAO1, AAO1,OspPLAIItheta, pPLAIItheta,OsASR2, OsASR4, Asr4, ASR2, OsASR6, ASR6,OsPFK06, PFK06,OsPLC4, OsC2DP41, C2DP41,OsLPAT4,OsSKIN2, OsO3L9, O3L9,OsLPAT5,OsLPAT2,OsLPAT1,OsLPAT3,OsLOX11, OsRCI-1, RCI-1, OsBphi262, OsLOX12, OsLOX2.2, LOX2.2, LOX2.1, OsLOX2.1, OsLOX14, LOX14,OsJMT1, JAMT1, OsJAMT1
52125	36389095	Veisi S., Sabouri A., Abedi A.	Meta-analysis of QTLs and candidate genes associated with seed germination in rice (<i>Oryza sativa</i> L.).	Physiol Mol Biol Plants	28(8)	1587-1605	2022		
52126	35955848	Liu R., Feng Q., Li P., Lou G., Chen G., Jiang H., Gao G., Zhang Q., Xiao J., Li X., Xiong L., He Y.	<i>GLW7.1</i>, a Strong Functional Allele of <i>Ghd7</i>, Enhances grain size in Rice.	Int J Mol Sci	23(15)		2022	SLR1,RSR1,GHD7,FZP,HAP5L,NAC25,NAC24,SNB,FBOX130	slr1-1, slr1, slr, GAI, OsGAI, OsSLR1, Os SLR1, OsRGA1, OsGRAS-18, OsGRAS-18, GRAS-18, GRAS18, SLR-1,AP2/EREBP#090, AP2/EREBP90, OsTOE1, TOE1, qHD5, AP2-1, AP2/EREBP/RSR1, OsRSR1, DLN130, DLN130a, DLN130b, OsDLN130, OsDLN130a, OsDLN130b,Ghd2, Ghd7, OsGhd7, OsCCT26, OsCMF8, OsI, Ghd7/Hd4, Hd4, EH7-1/Hd4, Ghd7-0a, EH7-1, EH7/Ghd7, EH7, OsEH7, GLW7.1, OsGLW7.1,fzp*, fzp, OsBD1, BD1, OsERF#078, OsERF078, OsERF78, ERF78, AP2/EREBP#133, AP2/EREBP133, BFL1, SGDP7, OsSGDP7,OsEnS-133, OsHAP5L, OsNF-YC12, NF-YC12, OsNF-YC11, NF-YC11, NFYC11,ONAC025, ONAC25, OsEnS-144, OsNAC025, NAC025,NAC94, ONAC024, ONAC24, OsNAC024, NAC024,AP2/EREBP#073, AP2/EREBP73, AP2-3, OsAP2-3, SSH1, OsSSH1, OsSNB, DLN181, DLN181a, DLN181b, OsDLN181, OsDLN181a, OsDLN181b, SUI4, OsSUI4, SUI4/SNB,OsFBK12, OsFbox130, Os_F0642,  OsFBK12, FBK12
52127	35995119	Chen K., Shi Z., Zhang S., Wang Y., Xia X., Jiang Y., Gull S., Chen L., Guo H., Wu T., Zhang H., Liu J., Kong W.	Methylation and expression of rice NLR genes after low temperature stress.	Gene	845	146830	2022		
52128	35994056	Zhao G., Xie S., Zong S., Wang T., Mao C., Shi J., Li J.	Mutation of TL1, encoding a novel C2H2 zinc finger protein, improves grains eating and cooking quality in rice.	Theor. Appl. Genet.	135(10)	3531-3543	2022		
52129	36051217	Huo L., Liu Y.	Genetically Modified Rice: Do Chinese Consumers Support or Go Against It? Based on the Perspectives of Perceived Risk and Trust.	Front Psychol	13	813862	2022		
52130	35940490	Xu P., Zhang Y., Wen X., Yang Q., Liu L., Hao S., Li J., Wu Z., Shah L., Sohail A., Liu Q., Sun L., Hong Y., Chen D., Shen X., Zhan X., Cheng S., Cao L., Wu W.	The clock component OsLUX regulates rice heading through recruiting OsELF3-1 and OsELF4s to repress Hd1 and Ghd7.	Journal of Advanced Research			2022		
52131	36004924	Ahmad S., Chen Y., Shah A.Z., Wang H., Xi C., Zhu H., Ge L.	The Homeodomain-Leucine Zipper Genes Family Regulates the Jinggangmycin Mediated Immune Response of <i>Oryza sativa</i> to <i>Nilaparvata lugens</i>, and <i>Laodelphax striatellus</i>.	Bioengineering (Basel)	9(8)		2022	HOX8,HOX15,HOX9,HOX26,TF1L,HOX6,HOX28,SGD2,ROC6,ROC4,ROC3,HOX25,HOX5,HOX1,HOX7,HOX18,HOX4,HOX13,HOX22,HB4,HOX2,HOX33,OUL1,HOX11,HOX16,HOX20,TF1,HOX23,LF1,ROC1,ROC7,HOX17,ROC2,HOX24,HOX21,URL1,HOX27,ROC9,HOX19	Oshox8, OsHDZ35, OsHDZIP35, HDZ35, HDZIP35,Oshox15, OsHox15, OsHDZ34, OsHDZIP34, HDZ34, HDZIP34,Oshox9, OsHox9, OsHB2, HB2, OSHB2, OsHDZ37, OsHDZIP37, HDZ37, HDZIP37,Oshox26, OsHDZ4, OsHDZIP4, HDZ4, HDZIP4,OsTF1L, OsHDZ24, OsHDZIP24, HDZ24, HDZIP24,Oshox6, OsHox6, OsHDZ33, OsHDZIP33, HDZ33, HDZIP33,Oshox28, OsHox28, OsHDZ18, OsHDZIP18, HDZ18, HDZIP18,HOX3, Oshox3, OsHox3, OsHDZ1, HDZ1, OsHDZIP1, HDZIP1,Roc6(t), Roc6, GL2-6, OsHDZ32, OsHDZIP32, HDZ32, HDZIP32,Roc4(t), Roc4, GL2-4, OsROC4, OsGL2-4, OsHDZ16, OsHDZIP16, HDZ16, HDZIP16,Roc3(t), Roc3, GL2-3, OsHDZ39, OsHDZIP39, HDZ39, HDZIP39,Oshox25, OsHox25, OsHDZ29, OsHDZIP29, HDZ29, HDZIP29,Oshox5, OsHox5, EIP9, OsHDZ25, OsHDZIP25, HDZ25, HDZIP25,  OsHDZ26, OsHDZIP26, HDZ26, HDZIP26,Oshox1, OsHox1, OsHDZ38, OsHDZIP38, HDZ38, HDZIP38,Oshox7, OsHox7, OsHDZ5, OsHDZIP5, HDZ5, HDZIP5,Oshox18, OsHox18, OsHDZ21, OsHDZIP21, HDZ21, HDZIP21,Oshox4, OsHox4, OsHDZ31, OsHDZIP31, HDZ31, HDZIP31,Oshox13, OsHox13, OsHDZ11, OsHDZIP11, HDZ11, HDZIP11,Oshox22, OsHox22, OsHDZ14, OsHDZIP14, HDZ14, HDZIP14,OSHB4, OsHox32, HOX32, OsHB4, Oshox32, PHB3, OsHDZ13, OsHDZIP13, HDZ13, HDZIP13,Oshox2, OsHox2, OsHDZ19, OsHDZIP19, HDZ19, HDZIP19,Oshox33, OsHox33, OSHB3, HB3, SIP22, OsSIP22, OsHDZ40, OsHDZIP40, HDZ40, HDZIP40,ROC5, Roc5(t), Roc5, GL2-5, OsROC5, CLF1, OsCLF1, OsOUL1, OsHDZ7, OsHDZIP7, HDZ7, HDZIP7,Oshox11, OsHox11, OsHDZ30, OsHDZIP30, HDZ30, HDZIP30,Oshox16, OsHox16, OsHDZ8, OsHDZIP8, HDZ8, HDZIP8,Oshox20, OsHox20, OsHDZ28, OsHDZIP28, HDZ28, HDZIP28,OSTF1(t), OsTF1, OsHDZ3, OsHDZIP3, HDZ3, HDZIP3,Oshox23, OsHox23, OsHDZ36, OsHDZIP36, HDZ36, HDZIP36,HOX10, Oshox10, OsHox10, OsHB1, HB1, OSHB1, LF1/OsHB1, OsLF1, OsHDZ9, OsHDZIP9, HDZ9, HDZIP9,Roc1(t), GL2-1, OsHDZ23, OsHDZIP23, HDZ23, HDZIP23,Roc7(t), Roc7, GL2-7, OsHDZ22, OsHDZIP22, HDZ22, HDZIP22,Oshox17, OsHox17, OsHDZ15, OsHDZIP15, HDZ15, HDZIP15,Roc2(t), Roc2, GL2-2, OsHDZ17, OsHDZIP17, HDZ17, HDZIP17,Oshox24, OsHox24, OsSLI1, OsHDZ6, OsHDZIP6, HDZ6, HDZIP6,Oshox21, OsHox21, OsHDZ10, OsHDZIP10, HDZ10, HDZIP10,ROC8, Roc8(t), Roc8, OsROC8, GL2-8, CRM1, OsCRM1, Os URL1, OsHDZ20, OsHDZIP20, HDZ20, HDZIP20,Oshox27, OsHox27, OsHDZ27, OsHDZIP27, HDZ27, HDZIP27,Roc9(t), Roc9, GL2-9, OsGL2, GL2, OsHDZ2, HDZ2, OsHDZIP2, HDZIP2,Oshox19, OsHox19, OsHDZ12, OsHDZIP12, HDZ12, HDZIP12
52132	35922462	Barnaby J.Y., McClung A.M., Edwards J.D., Pinson S.R.M.	Identification of quantitative trait loci for tillering, root, and shoot biomass at the maximum tillering stage in rice.	Sci Rep	12(1)	13304	2022		
52133	36079631	Zhang Y., Zhao J., Hu Y., Zhang Y., Ying Y., Xu F., Bao J.	Combined Effects of Different Alleles of <i>FLO</i>2, <i>Wx</i> and <i>SSIIa</i> on the Cooking and Eating Quality of Rice.	Plants (Basel)	11(17)		2022		
52134	36035704	Wang M., Dean R.A.	Host induced gene silencing of <i>Magnaporthe oryzae</i> by targeting pathogenicity and development genes to control rice blast disease.	Front Plant Sci	13	959641	2022		
52135	35991424	Shim K.C., Adeva C., Kang J.W., Luong N.H., Lee H.S., Cho J.H., Kim H., Tai T.H., Ahn S.N.	Interaction of <i>starch branching enzyme 3</i> and <i>granule-bound starch synthase 1</i> alleles increases amylose content and alters physico-chemical properties in <i>japonica</i> rice (<i>Oryza sativa</i> L.).	Front Plant Sci	13	968795	2022		
52136	36012116	Yan B., Zheng H., Sang Y., Wang Y., Sun J., Li F., Wang J., Wang X.	A Single Amino Acid Substitution in MIL1 Leads to Activation of Programmed Cell Death and Defense Responses in Rice.	Int J Mol Sci	23(16)		2022		
52137	36139792	Basit F., Bhat J.A., Ulhassan Z., Noman M., Zhao B., Zhou W., Kaushik P., Ahmad A., Ahmad P., Guan Y.	Seed Priming with Spermine Mitigates Chromium Stress in Rice by Modifying the Ion Homeostasis, Cellular Ultrastructure and Phytohormones Balance.	Antioxidants (Basel)	11(9)		2022		
52138	35980881	Lee S.Y., Jin Z., Jang S., Kim B., Seo J., Koh H.J.	Histological characterization of anther structure in Tetep-cytoplasmic male sterility and fine mapping of restorer-of-fertility gene in rice.	PLoS ONE	17(8)	e0268174	2022		
52139	35976402	Fu K., Song W., Chen C., Mou C., Huang Y., Zhang F., Hao Q., Wang P., Ma T., Chen Y., Zhu Z., Zhang M., Tong Q., Liu X., Jiang L., Wan J.	Improving pre-harvest sprouting resistance in rice by editing OsABA8ox using CRISPR/Cas9.	Plant Cell Rep.	41(10)	2107-2110	2022		
52140	35526193	Verma L., Bhadouria J., Bhunia R.K., Singh S., Panchal P., Bhatia C., Eastmond P.J., Giri J.	Monogalactosyl diacylglycerol synthase 3 affects phosphate utilization and acquisition in rice.	J. Exp. Bot.	73(14)	5033-5051	2022		
52141	35926410	Li N., Zhang J.J., Liu J., Zhang N., Yang H.	Biodegradation of butachlor in rice intensified by a regulator of OsGT1.	Ecotoxicol. Environ. Saf.	242	113942	2022		
52142	35918653	Zhang Y., He Q., Zhou X., Zheng S., Wang Y., Li P., Wang Y.	Genetic diversity and population structure of 93 rice cultivars (lines) (Oryza sativa Xian group) in Qinba in China by 3 types of genetic markers.	BMC Genomics	23(1)	550	2022		
52143	35984919	Li H., Zhang Y., Wu C., Bi J., Chen Y., Jiang C., Cui M., Chen Y., Hou X., Yuan M., Xiong L., Yang Y., Xie K.	Fine-tuning OsCPK18/OsCPK4 activity via genome editing of phosphorylation motif improves rice yield and immunity.	Plant Biotechnol. J.	20(12)	2258-2271	2022		
52144	36077294	Shahzad B., Shabala L., Zhou M., Venkataraman G., Solis C.A., Page D., Chen Z.H., Shabala S.	Comparing Essentiality of <i>SOS1</i>-Mediated Na+ Exclusion in Salinity Tolerance between Cultivated and Wild Rice Species.	Int J Mol Sci	23(17)		2022		
52145	36117995	Jaiswal V., Kakkar M., Kumari P., Zinta G., Gahlaut V., Kumar S.	Multifaceted roles of GRAS transcription factors in growth and stress responses in plants.	iScience	25(9)	105026	2022		
52146	36140710	Dong G., Xiong H., Zeng W., Li J., Du D.	Ectopic Expression of the Rice grain-size-Affecting Gene GS5 in Maize Affects Kernel Size by Regulating Endosperm Starch Synthesis.	Genes (Basel)	13(9)		2022		
52147	36015482	Abe T., Ito M., Takahashi R., Honma T., Kuramata M., Ishikawa S.	QTL Pyramiding and Its Use in Breeding for Increasing the Phytoextraction Efficiency of Soil Cd via High-Cd-Accumulating Rice.	Plants (Basel)	11(16)		2022		
52148	36042159	Dong X., Zeng M., Hu W., Huang X., Zhang Y., Chen G., Xiong F., Wu Y.	<i>OsDOF11</i> Promotes crown root Formation via Cytokinin in <i>Oryza Sativa</i>.	Front Biosci (Landmark Ed)	27(8)	248	2022		
52149	36041562	Bin Sun, Xue P., Wen X.X., Gong K., Wang B.F., Xu P., Lin Z.C., Peng Z.Q., Fu J.L., Yu P., Sun L.P., Zhang Y.X., Cao L.M., Cao L.Y., Cheng S.H., Wu W.X., Zhan X.D.	qHD5 encodes an AP2 factor that suppresses rice heading by down-regulating Ehd2 expression.	Plant Sci.	324	111446	2022		
52150	35896479	Sangchai P., Buaboocha T., Sirikantaramas S., Wutipraditkul N.	Changes in physiological responses of OsCaM1-1 overexpression in the transgenic rice under dehydration stress.	Biosci. Biotechnol. Biochem.	86(9)	1211-1219	2022		
52151	36012605	Zhang Q., Liu Y., Jiang Y., Li A., Cheng B., Wu J.	<i>OsASR6</i> Enhances Salt Stress Tolerance in Rice.	Int J Mol Sci	23(16)		2022	ASR4,NCED1	OsASR2, OsASR4, Asr4, ASR2, OsASR6, ASR6,OsNCED1, OsCCD4a, CCD4a
52152	35955949	Wang J., Liu Y., Hu S., Xu J., Nian J., Cao X., Chen M., Cen J., Liu X., Zhang Z., Liu D., Zhu L., Hu J., Ren D., Gao Z., Shen L., Dong G., Zhang Q., Li Q., Yu S., Qian Q., Zhang G.	<i>LEAF TIP RUMPLED 1</i> Regulates Leaf Morphology and salt tolerance in Rice.	Int J Mol Sci	23(15)		2022	HKT4,PIP1;3,PIP2;2,TIP1;1,ARF17,SHL2,PIP1;2,SKC1,BRD1,HKT3,PIP2A,TIP1;2,ARF16,LTR1,PIP2;4,PIP1A	OsHKT4, OsHKT1;1, HKT1;1, OsHKT2, RNC4, OsHKT1;1-FL, OsHKT1;1-V1, OsHKT1;1-V2, OsHKT1;1-V3, OsHKT1;1-V4, OsHKT1;1-V5, OsHKT1;1-V6, OsHKT1;1-V7, OsHKT1;1-V8,OsPIP1;3. PIP1.3, PIP1-3, RWC3, RWC-3, OsPIP1-3,OsPIP2;2, PIP2-2, OsPIP2-3,OsTIP1;1, TIP1-1, rTIP1,OsARF17,shl2, SHL2, sh2, OsRDR6, RDR6,OsPIP1;2, PIP1-2, OsPIP1-2,OsHKT8, HKT8, Os-HKT1;5, OsHKT1;5, HKT1;5, SKC1, qSKC-1(t), OsSKC1,brd1, OsDWARF, DWARF, OsBR6ox, BR6ox, CYP85A1, CYP85A4, OsDWF, CYP85A1/OsDWARF, OsBRD1, OsCYP85A1,OsHKT3, OsHKT2;3, HKT2;3,OsPIP2a, PIP2-1, PIP2a, PIP2.1, OsPIP2;1, PIP2;1, OsPIP2-1,OsTIP1;2, TIP1-2, TIP1.2, TIP1,OsARF16,OsCER1, CER1, OsGL1-4, GL1-4, Os CER1, OsLTR1,OsPIP2;4, PIP2.4, PIP2-4, OsPIP2-4,OsPIP1a, OsPIP1;1, PIP1a, RWC-1, PIP1-1, RWC1, OsPIP1-1, PIP1;1, PIP1-5
52153	36077304	Liu X., Cao Y., Du G., Zhang C., Xu M., Cheng Z., Shen Y., Yu H.	OsRAD51 Plays a Vital Role in Promoting Homologous Recombination in Rice Meiosis.	Int J Mol Sci	23(17)		2022	COLD11,DMC1A,FIGNL1,RAD51A2,DMC1B,BRCA2	OsRAD51A1, RAD51A1, OsCOLD11,OsDMC1A, OsDmc1A, Dmc1A, DMC1, OsDMC1, RiLIM15A, OsRad51,OsFIGNL1,OsRad51A2, OsRAD51,OsDMC1B, OsDmc1B, Dmc1B, RiLIM15B ,OsBRCA2
52154	35982378	Luo W., Tan J., Li T., Feng Z., Ding Z., Xie X., Chen Y., Chen L., Liu Y.G., Zhu Q., Guo J.	Overexpression of maize GOLDEN2 in rice and maize calli improves regeneration by activating chloroplast development.	Sci China Life Sci			2022		
52155	35986244	Qin Q., Zhao Y., Zhang J., Chen L., Si W., Jiang H.	A maize heat shock factor ZmHsf11 negatively regulates heat stress tolerance in transgenic plants.	BMC Plant Biol.	22(1)	406	2022		
52156	35983411	Malik A., Kumar A., Ellur R.K., Krishnan S G., Dixit D., Bollinedi H., Vinod K.K., Nagarajan M., Bhowmick P.K., Singh N.K., Singh A.K.	Molecular mapping of QTLs for grain dimension traits in Basmati rice.	Front Genet	13	932166	2022		
52157	35979077	Xu H., Yang X., Zhang Y., Wang H., Wu S., Zhang Z., Ahammed G.J., Zhao C., Liu H.	CRISPR/Cas9-mediated mutation in auxin efflux carrier <i>OsPIN9</i> confers chilling tolerance by modulating reactive oxygen species homeostasis in rice.	Front Plant Sci	13	967031	2022		
52158	35977497	Hao Z., Tian J., Fang H., Fang L., Xu X., He F., Li S., Xie W., Du Q., You X., Wang D., Chen Q., Wang R., Zuo S., Yuan M., Wang G.L., Xia L., Ning Y.	A VQ-motif-containing protein fine-tunes rice immunity and growth by a hierarchical regulatory mechanism.	Cell Rep	40(7)	111235	2022	WRKY45,BU1,WRKY53,VQ25,_,_,PR10A,XTH2,PUB73	OsWRKY45, OsWRKY45-1, OsWRKY45-2, WRKY45-1, WRKY45-2,ILI4, OsILI4 , OsBU1, BU1/ILI4, OsbHLH172, bHLH172,OsWRKY53, WRKY-53,OsVQ25,,PR5,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsXTH2, XTR1, OsXTR1,OsPUB73
52159	36037381	Zhao Z., Wang C., Yu X., Tian Y., Wang W., Zhang Y., Bai W., Yang N., Zhang T., Zheng H., Wang Q., Lu J., Lei D., He X., Chen K., Gao J., Liu X., Liu S., Jiang L., Wang H., Wan J.	Auxin regulates source-sink carbohydrate partitioning and reproductive organ development in rice.	Proc. Natl. Acad. Sci. U.S.A.	119(36)	e2121671119	2022	RST1,SUT4,SUT5,SUT1,ETT2,YUCCA4	OsARF10, ARF10, OsARF18, ARF18, OsRST1, GLR1, OsGLR1,OsSUT4(t), OsSUT4,OsSUT5(t), OsSUT5Z, OsSUT5,OsSUT1, OsSUT2,OsARF2, ARF2, OsETT2, ARF3a, OsARF3a, DLN16, OsDLN16, ARF3,OsYUCCA4, OsYUC4, YUC4, YUCCA6, OsYUCCA6
52160	35920901	Wu Q., Jing H.K., Feng Z.H., Huang J., Shen R.F., Zhu X.F.	Salicylic Acid Acts Upstream of Auxin and Nitric Oxide (NO) in Cell Wall Phosphorus Remobilization in Phosphorus Deficient Rice.	Rice (N Y)	15(1)	42	2022	_,SPX5,SPX2,PT6,PT2,SPX6	OsPAL05, PAL05, OsPAL3, PAL5, PAL3, OsPAL2;3, PAL2;3, OsPAL2-1, PAL2-1,OsSPX5,OsSPX2,OsPT6, PHT1-6, OsPht1;6, OsLPT6:1, OsLPT1, OsPT6:1, Pht1;6, LPT6:1, LPT1, PT6:1,OsPT2, PTH1-2, OsPht1;2, PHT1;2, OsPHT1;2,OsSPX6
52161	35952828	Ramanathan V., Kambale R., Palaniswamy R., Rahman H., Muthurajan R.	Comparative RNA-Seq analysis unravels molecular mechanisms regulating therapeutic properties in the grains of traditional rice Kavuni.	Plant Sci.	324	111411	2022		
52162	35974066	AnilKumar C., Sah R.P., Muhammed Azharudheen TP., Behera S., Singh N., Prakash N.R., Sunitha N.C., Devanna B.N., Marndi B.C., Patra B.C., Nair S.K.	Understanding complex genetic architecture of rice grain weight through QTL-meta analysis and candidate gene identification.	Sci Rep	12(1)	13832	2022		
52163	36009250	Hwang O.J., Back K.	Functional Characterization of Arylalkylamine <i>N</i>-Acetyltransferase, a Pivotal Gene in Antioxidant Melatonin Biosynthesis from <i>Chlamydomonas reinhardtii</i>.	Antioxidants (Basel)	11(8)		2022		
52164	36072319	Kong W., Deng X., Liao Z., Wang Y., Zhou M., Wang Z., Li Y.	<i>De novo</i> assembly of two chromosome-level rice genomes and bin-based QTL mapping reveal genetic diversity of grain weight trait in rice.	Front Plant Sci	13	995634	2022		
52165	36012716	Chen S., Huang Y., Han J., Zhang S., Yang Q., Li Z., Zhang Y., Mao R., Fan L., Liu Y., Chen Y., Xie X.	Blocking Rice Shoot Gravitropism by Altering One Amino Acid in LAZY1.	Int J Mol Sci	23(16)		2022		
52166	36008427	Lu X., Ma R., Zhan J., Jin Z., Tian Y.	Mechanism of peptides from rice hydrolyzed proteins hindering starch digestion subjected to hydrothermal treatment.	NPJ Sci Food	6(1)	37	2022		
52167	35976113	Xu Z., Gao Y., Gao C., Mei J., Wang S., Ma J., Yang H., Cao S., Wang Y., Zhang F., Liu X., Liu Q., Zhou Y., Zhang B.	Glycosylphosphatidylinositol anchor lipid remodeling directs proteins to the plasma membrane and governs cell wall mechanics.	Plant Cell			2022	BC16	OsBC16
52168	35941236	Yun P., Li Y., Wu B., Zhu Y., Wang K., Li P., Gao G., Zhang Q., Li X., Li Z., He Y.	OsHXK3 encodes a hexokinase-like protein that positively regulates grain size in rice.	Theor. Appl. Genet.	135(10)	3417-3431	2022		
52169	36008613	Wu D.H., Chen C.T., Yang M.D., Wu Y.C., Lin C.Y., Lai M.H., Yang C.Y.	Controlling the lodging risk of rice based on a plant height dynamic model.	Botanical Studies	63(1)	25	2022		
52170	36031806	Huang P., Zhao J., Hong J., Zhu B., Xia S., Engao Z., Han P., Zhang K.	Cytokinins Regulate Rice Lamina Joint Development and leaf angle.	Plant Physiol.			2022		
52171	36013416	Tomita M., Tokuyama R.	Isogenic Japonica Rice Koshihikari Integrated with Late Flowering Gene <i>Hd16</i> and Semidwarfing Gene <i>sd1</i> to Prevent High Temperature Maturation and Lodging by Typhoon.	Life (Basel)	12(8)		2022		
52172	36012245	Wang H., Ouyang Q., Yang C., Zhang Z., Hou D., Liu H., Xu H.	Mutation of <i>OsPIN1b</i> by CRISPR/Cas9 Reveals a Role for Auxin Transport in Modulating Rice Architecture and Root Gravitropism.	Int J Mol Sci	23(16)		2022		
52173	35883135	Zou T., Xiong P., Zhou F., Zhou D., Chen H., Li G., Peng K., Zheng K., Han Y., Zhang K., Zhang X., Yang S., Deng Q., Wang S., Zhu J., Liang Y., Sun C., Yu X., Liu H., Wang L., Li P., Li S.	Grass-specific ABERRANT MICROSPORE DEVELOPMENT 1 is required for maintaining pollen fertility in rice.	Plant J.	111(6)	1509-1526	2022	MS2,AMD1,PKS10,TDR	OsMS2, OsDPW, DPW, DPW1, OsDPW1, OsFAR2, FAR2,OsAMD1, PWA1, OsPWA1 ,OsPKS10, OsPKS2, PKS2, OsCHS10, CHS10,tdr, OsbHLH005, bHLH005, OsbHLH5, bhlh5, TDR1, OsTDR, OsTDR1, OsMYC5, MYC5
52174	36090216	Singh S.P., Vanlalsanga, Mehta S.K., Singh Y.T.	New insight into the pigmented rice of northeast India revealed high antioxidant and mineral compositions for better human health.	Heliyon	8(8)	e10464	2022		
52175	35960419	Ren D., Xie W., Xu Q., Hu J., Zhu L., Zhang G., Zeng D., Qian Q.	lsl1 controls cell death and grain production by stabilizing chloroplast in rice.	Sci China Life Sci	65(11)	2148-2161	2022		
52176	35945250	Lu L., Zhai X., Li X., Wang S., Zhang L., Wang L., Jin X., Liang L., Deng Z., Li Z., Wang Y., Fu X., Hu H., Wang J., Mei Z., He Z., Wang F.	Met1-specific motifs conserved in OTUB subfamily of green plants enable rice OTUB1 to hydrolyse Met1 ubiquitin chains.	Nat Commun	13(1)	4672	2022	WTG1,_,E1,UBP6	OTUB1, OsOTUB1, OsOTUB1.1, OsOTUB1.2, qNPT1, OsWTG1,OsPolyUb, PolyUb,OsE1,OsUBP6, OsUBP14, UBP14, OsUCH14, UCH14
52177	36061203	Aslam K., Naveed S.A., Sabar M., Shabir G., Shah S.M., Khan A.R., Shah M.M., Fiaz S., Xu J., Arif M.	Identification of QTLs for rice grain size and weight by high-throughput SNP markers in the IR64 x Sadri population.	Front Genet	13	955347	2022		
52178	35949951	Gao P., Xia H., Li Q., Li Z., Zhai C., Weng L., Mi H., Yan S., Datla R., Wang H., Yang J.	PALE-GREEN LEAF 1, a rice cpSRP54 protein, is essential for the assembly of the PSI-LHCI supercomplex.	Plant Direct	6(8)	e436	2022	_,_,CPSRP54B,YGL138	cpSRP54,cpSRP54,OscpSRP54b, cpSRP54b,YGL138(t), SRP54, OsSRP54, OscpSRP54a, cpSRP54a, PGL14, OsPGL1, PGL1
52179	35963493	Kapoor R., Kumar G., Pawar L., Salvi P., Devanna B.N., Singh K., Sharma T.R.	Stress responsive OsHyPRP16 promoter driven early expression of resistance gene Pi54 potentiate the resistance against Magnaporthe oryzae in transgenic rice.	Plant Sci.	324	111413	2022		
52180	35981868	Qu Y., Mueller-Cajar O., Yamori W.	Improving plant heat tolerance through modification of Rubisco activase in C3 plants to secure crop yield and food safety in a future warming world.	J. Exp. Bot.			2022		
52181	35961516	Hu B., Chen W., Wan L., Li T., Wang H., Wang Y., Pu Z., Tu B., Yuan H., Wang Y., Ma B., Qin P., Li S.	Short grain 5 controls grain length in rice by regulating cell expansion.	Plant Sci.	323	111412	2022		
52182	35976520	Rekha G., Abhilash Kumar V., Gokulan C.G., Koushik MBVN., Laxmi Prasanna B., Kulkarni S., Aleena D., Harika G., Hajira S.K., Pranathi K., Punniakoti E., Kale R.R., Dilip Kumar T., Ayyappa D., Anila M., Sinha P., Manohara K.K., Padmavathi G., Subba Rao LV., Laha G.S., Srinivas Prasad MS., Fiyaz R.A., Suneetha K., Balachandran S.M., Patel H.K., Sonti R.V., Senguttuvel P., Sundaram R.M.	DRR Dhan 58, a Seedling Stage Salinity Tolerant NIL of Improved Samba Mahsuri Shows Superior Performance in Multi-location Trials.	Rice (N Y)	15(1)	45	2022	SKC1	OsHKT8, HKT8, Os-HKT1;5, OsHKT1;5, HKT1;5, SKC1, qSKC-1(t), OsSKC1
52183	36081232	Gu J., Hu C., Jia X., Ren Y., Su D., He J.	Physiological and biochemical bases of spermidine-induced alleviation of cadmium and lead combined stress in rice.	Plant Physiol. Biochem.	189	104-114	2022		
52184	36076819	Cheng W., Xu Z., Fan S., Zhang P., Xia J., Wang H., Ye Y., Liu B., Wang Q., Wu Y.	Effects of Variations in the Chemical Composition of Individual Rice Grains on the Eating Quality of Hybrid Indica Rice Based on Near-Infrared Spectroscopy.	Foods	11(17)		2022		
52185	36077126	Rahim W., Khan M., Al Azzawi TNI., Pande A., Methela N.J., Ali S., Imran M., Lee D.S., Lee G.M., Mun B.G., Moon Y.S., Lee I.J., Yun B.W.	Exogenously Applied Sodium Nitroprusside Mitigates Lead Toxicity in Rice by Regulating Antioxidants and Metal Stress-Related Transcripts.	Int J Mol Sci	23(17)		2022	PCS1,MTP11,MTI1A,PCS5,MTP1,MTI1B	OsPCS1, OsPCS2, PCS2, OsPCS15, PCS15,OsMTP11, OsMTP5, MTP5,MT1a, OsMT1a, OsMT1e, OsMT-I-1a, MT-I-1a, OsMT1e-P, MTa, rgMT, OsMT-1, rgMT-1,OsPCS, PCS, OsPCS2, PCS2, OsPCS2a, PCS2a, OsPCS2b, PCS2b, OsPCS1, PCS1, OsPCS1a, OsPCS1b, OsPCS1c, OsPCS1full, OsPCS5,OsMTP1,OsMT1b, MT1b, OsMT-I-1b, OsMTI-1b, MT-I-1b, MTI-1b, MT1La, OsMT1La, OsMT1
52186	36010612	Li C., Zhou L., Wu B., Li S., Zha W., Li W., Zhou Z., Yang L., Shi L., Lin Y., You A.	Improvement of Bacterial Blight Resistance in Two Conventionally Cultivated Rice Varieties by Editing the Noncoding Region.	Cells	11(16)		2022		
52187	36134956	Hussain S., Zhang R., Liu S., Li R., Zhou Y., Chen Y., Hou H., Dai Q.	Transcriptome-Wide Analysis Revealed the Potential of the High-Affinity Potassium Transporter (<i>HKT)</i> Gene Family in Rice Salinity Tolerance via Ion Homeostasis.	Bioengineering (Basel)	9(9)		2022	HKT3,SKC1,HKT1,HKT6,HKT4,HKT7,HKT9	OsHKT3, OsHKT2;3, HKT2;3,OsHKT8, HKT8, Os-HKT1;5, OsHKT1;5, HKT1;5, SKC1, qSKC-1(t), OsSKC1,OsHKT1, OsHKT2;1, HKT2;1, Ni (Nipponbare)-OsHKT1, Po (Pokkali)-HKT1, OsHKT1;1, HKT1;1,OsHKT6, OsHKT1;3, HKT1;3, OsHKT1;3_FL, OsHKT1;3_V1, OsHKT1;3_V2, OsHKT1;3_V3, OsHKT1;3_V4, OsHKT1;3_V5,OsHKT4, OsHKT1;1, HKT1;1, OsHKT2, RNC4, OsHKT1;1-FL, OsHKT1;1-V1, OsHKT1;1-V2, OsHKT1;1-V3, OsHKT1;1-V4, OsHKT1;1-V5, OsHKT1;1-V6, OsHKT1;1-V7, OsHKT1;1-V8,OsHKT7, OsHKT1;4, HKT1;4,OsHKT9, OsHKT2;4, HKT2;4
52188	36041567	Cao H.W., Zhao Y.N., Liu X.S., Rono J.K., Yang Z.M.	A metal chaperone OsHIPP16 detoxifies cadmium by repressing its accumulation in rice crops.	Environ. Pollut.	311	120058	2022		
52189	36031595	Saha J., Chaudhuri D., Kundu A., Bhattacharya S., Roy S., Giri K.	Phylogenetic, structural, functional characterisation and effect of exogenous spermidine on rice (Oryza sativa) HAK transporters under salt stress.	Funct. Plant Biol.			2022		
52190	36036369	Jiang Y., Peng X., Zhang Q., Liu Y., Li A., Cheng B., Wu J.	Regulation of Drought and Salt Tolerance by OsSKL2 and OsASR1 in Rice.	Rice (N Y)	15(1)	46	2022	ASR4,SKL2	Asr4, OsASR6, OsASR2, Asr2, OsASR1, ASR1,OsSKL2
52191	36079570	Lamanchai K., Smirnoff N., Salmon D.L., Ngernmuen A., Roytrakul S., Leetanasaksakul K., Kittisenachai S., Jantasuriyarat C.	<i>OsVTC1-1</i> Gene Silencing Promotes a Defense Response in Rice and Enhances Resistance to <i>Magnaporthe oryzae</i>.	Plants (Basel)	11(17)		2022	GNS11,CYP72A1,UMAMIT9,UGT706E1,POX22.3,TIP1;2,GLP8-10,PRX81,RNS4,UPS1,CYP76M10,MPG1,CHT4	Gns11, OsGns11, OsBGL3, BGL3,CYP72A1,OsUMAMIT9,OsUGT706E1, OsUGT1, UGT1,POX22.3, OSPER, OsPOX, POX, Pir3, prx111, POX22, OsPOX1, POX1, OsPOX22.3, OsPR9, PR9,OsTIP1;2, TIP1-2, TIP1.2, TIP1,OsGLP8-10, OsRGLP2, RGLP2, OsCDP8.10, CDP8.10,prx81, OsPRX81,OsRNS4, OsRRP, RNaseDIS,OsUPS1,OsCYP76M10, OsCYP76-10, CYP76-10, OsCYP71T9, CYP71T9,OsMPG1, OsVTC1-1, VTC1-1,Cht4(t)*(Chi4), Chi4, Cht4, OsChia2b, Chi-4, CHIT2, OsCHIT2, PR3, OsPR3
52192	35993973	Bertolino L.T., Caine R.S., Zoulias N., Yin X., Chater C.C.C., Biswal A., Quick W.P., Gray J.E.	Stomatal Development and Gene Expression in Rice Florets.	Plant Cell Physiol.			2022		
52193	35872572	Lu H.P., Gao Q., Han J.P., Guo X.H., Wang Q., Altosaar I., Barberon M., Liu J.X., Gatehouse A.M.R., Shu Q.Y.	An ABA-serotonin module regulates root suberization and salinity tolerance.	New Phytol.	236(3)	958-973	2022		
52194	35909309	Hazra A., Varshney V., Verma P., Kamble N.U., Ghosh S., Achary R.K., Gautam S., Majee M.	methionine sulfoxide reductase B5 plays a key role in preserving seed vigor and longevity in rice (Oryza sativa).	New Phytol.	236(3)	1042-1060	2022		
52195	35984829	Liu K., Tang Y., Tang Y., Li M., Wu G., Chen Y., Jiang H.	Ectopic expression of WRINKLED1 in rice improves lipid biosynthesis but retards plant growth and development.	PLoS ONE	17(8)	e0267684	2022	ENR1,WRI1-1,FLO19,ACP,FATA,WRI1-2,PTPDC-E2,PKPBETA2,KASIII,PTPDC-E1-BETA1	OsENR1,AP2/EREBP131, AP2/EREBP#131, OsWRI1-1, OsWRI1a, WRI1a,ptPDC-E1-alpha1, OsptPDC-E1-alpha1, PDH-E1alpha, OsPDH-E1alpha,,OsFatA, FatA,AP2/EREBP155, AP2/EREBP#155, OsWRI1-2, OsWRI1b, WRI1b,ptPDC-E2, OsptPDC-E2, PDH-E2, OsPDH-E2,OsPKpb2, PKpb2, OsPKpbeta2, PKpbeta2, OsPK9, PK9,OsKASIII,ptPDC-E1-beta1, OsptPDC-E1-beta1, PDH-E1beta, OsPDH-E1beta
52196	35970910	Abdullah-Zawawi MR., Govender N., Muhammad N.A.N., Mohd-Assaad N., Zainal Z., Mohamed-Hussein ZA.	Genome-wide analysis of sulfur-encoding biosynthetic genes in rice (Oryza sativa L.) with Arabidopsis as the sulfur-dependent model plant.	Sci Rep	12(1)	13829	2022	IPMS2,ROMT9,BGLU35,2ODD25,_,BGLU27,CYP79A10,FMOGS-OX-L5,UGT75E1,IPMDH,IPMS1,SOT,BGLU29,_,FMOGS-OX,COMTL4,_,BGLU24,LDOX7,2ODD26,BGLU9,HIS1,2ODD16,_,COMTL5	OsIPMS2,COMT, OsCOMT, ROMT-9, OsCOMT1, OsCAldOMT1, CAldOMT1, OsOMT, OsCOMT15, COMT15,Os11bglu35, OsBGlu35 ,2-ODD25, Os2-ODD25, Os2ODD25,OsSta2, Sta2,Os8bglu27, OsBGlu27,OsCYP79A10,OsFMOGS-OX-L5,OsUGT75E1,OsIPMDH,OsIPMS1,OsSOT,Os9bglu29, OsBGlu29, OsBGLU29,OsNIT1, NIT1, OsNIT2, NIT2, OsNIT4B, NIT4B,OsFMOGS-OX,OsCOMTL4, COMT2, OsCOMT2,OsIAGLU, IAGLU,Os6bglu24, Os6BGlu24, 6BGlu24,OsLDOX7, OsFLS1, FLS1,2-ODD26, Os2-ODD26, Os2ODD26,Os4bglu9, Os4BGlu9,2-ODD12, Os2-ODD12, Os2ODD12, 2ODD12, OsHIS1,2-ODD16, Os2-ODD16, Os2ODD16,OsACO4, ACO4,OsCOMTL5, OsCOMT4, COMT4
52197	35789396	Niu M., Wang H., Yin W., Meng W., Xiao Y., Liu D., Zhang X., Dong N., Liu J., Yang Y., Zhang F., Chu C., Tong H.	Rice DWARF AND LOW-TILLERING and the homeodomain protein OSH15 interact to regulate internode elongation via orchestrating brassinosteroid signaling and metabolism.	Plant Cell	34(10)	3754-3772	2022	DLT,D61,OSH15	dlt, OsGRAS32, OsDLT, OsDLT1, DTL1, OsGRAS-32, OsGRAS32, GRAS-32, GRAS32, SMOS2/DLT, SMOS2, OsSMOS2, OsGS6, GS6,d61*, dwf42, d61, OsBRI1, OSBRI1, BRI1, Os BRI1, Osbri1, OsBRKq1, BRKq1,OSH15, OsH15, OSKN3, Oskn3, HOS3, D6, d6, OSH15/Oskn3, HB253, H15, OsKNOX3, KNOX3
52198	35915893	Molla K.A.	Flowering time and photoperiod sensitivity in rice: Key players and their interactions identified.	Plant Cell	34(10)	3489-3490	2022	TPR75 ,HD3A,FTIP1,RFT1,C2DP5	OsTPR075, TPR075, OsTPR75,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,OsFTIP1, OsC2DP55, C2DP55,FT-L 3, OsFTL3, FTL3, FT-L3, RFT, OsRFT1,OsC2DP5, OsFTIP9, FTIP9
52199	36181988	Shi B., Hou J., Yang J., Han I.J., Tu D., Ye S., Yu J., Li L.	Genome-wide analysis of the CSN genes in land plants and their expression under various abiotic stress and phytohormone conditions in rice.	Gene	850	146905	2023		
52200	35921149	Osnato M.	From the archives: A rice grain size regulatory module, GWAS of primary plant metabolism, and promoter trapping of polarity markers.	Plant Cell	34(10)	3485-3486	2022	HDR3,GW6A	OsHDR3,OsglHAT1, glHAT1, GW6a, OsGW6a, OsGNAT1, GNAT1
52201	36102826	Gorelova V.	Assembling chimeras: BC16 helps to reshape protein GPI lipid anchors, thereby tuning cell wall mechanics in rice.	Plant Cell			2022	BC16	OsBC16
52202	36056227	Theerawitaya C., Supaibulwatana K., Tisarum R., Samphumphuang T., Chungloo D., Singh H.P., Cha-Um S.	Expression levels of nitrogen assimilation-related genes, physiological responses, and morphological adaptations of three indica rice (Oryza sativa L. ssp. indica) genotypes subjected to nitrogen starvation conditions.	Protoplasma			2022		
52203	36142568	Wen D., Bao L., Huang X., Qian X., Chen E., Shen B.	<i>OsABT</i> Is Involved in Abscisic Acid Signaling Pathway and salt tolerance of Roots at the Rice Seedling Stage.	Int J Mol Sci	23(18)		2022	HAK5,ABA8OX2,PYL/RCAR4,NCED1,PYL/RCAR10,GORI,NCED3,SOS1,PP2C53	OsHAK5, FCO13, OsFCO13,OsABA8OX2, OsABA8ox2, CYP707A6, OsCYP707A6, OsAba-ox2, OsABA8ox2, OsABA8OH2, ABA8OH2, ABA8'-OH2, OsABA8'ox2, ABA8'ox2, OsABAX2, ABAX2, OsABA8'OH2, ABA8'OH2,OsPYL/RCAR4, PYL4, OsPYL4, OsPYL6, PYL6,OSNCED1, OsNCED-1, OsNCED3, OsNced3, NCED3, OsNCED9, NCED9,OsPYL/RCAR10, PYL10, OsPYL10, OsPYL1, PYL1, R10, OsPYL/R10,OsWD40-89, WD40-89, OsGORI, OsABT, ABT,OSNCED3, OsNCED-3, OsNCED3, OsNCED3a, NCED3a, OsNCED4, NCED4, OsNECD2, OsNCED2b, NCED2b ,OsSOS1, OsNHA1, NHA1, SOS1/NHX7, NHX7, OsNHX7,OsPP2C53, OsPP81, OsABIL2, ABIL2
52204	36235432	Jiang R., Zhou S., Da X., Chen T., Xu J., Yan P., Mo X.	Ubiquitin-Specific Protease 2 (OsUBP2) Negatively Regulates Cell Death and Disease Resistance in Rice.	Plants (Basel)	11(19)		2022	LMP1	UBP1-9, OsUBP1-9, OsUBP1, UBP1, OsLMP1, RSR1, OsRSR1, OsUBP2, UBP2
52205	35996876	Zhang M., Zhao R., Huang K., Huang S., Wang H., Wei Z., Li Z., Bian M., Jiang W., Wu T., Du X.	The OsWRKY63-OsWRKY76-OsDREB1B module regulates chilling tolerance in rice.	Plant J.	112(2)	383-398	2022		
52206	36071671	Wu D., Wei Y., Zhao X., Li B., Zhang H., Xu G., Lv J., Zhang D., Zhang X., Ni M.	Ancestral function but divergent epigenetic regulation of HAIKU2 reveals routes of seed developmental evolution.	Mol Plant	15(10)	1575-1589	2022		
52207	36212366	Chen S., Zeng X., Li Y., Qiu S., Peng X., Xie X., Liu Y., Liao C., Tang X., Wu J.	The nuclear-encoded plastid ribosomal protein L18s are essential for plant development.	Front Plant Sci	13	949897	2022	WLP3	OsPRPL18, PRPL18, OsWLP3
52208	36191635	Zhan H., Lu M., Luo Q., Tan F., Zhao Z., Liu M., He Y.	OsCPD1 and OsCPD2 are functional brassinosteroid biosynthesis genes in rice.	Plant Sci.	325	111482	2022		
52209	36102807	Zhang Y., Dong G., Wu L., Wang X., Chen F., Xiong E., Xiong G., Zhou Y., Kong Z., Fu Y., Zeng D., Ma D., Qian Q., Yu Y.	Formin protein DRT1 affects gross morphology and chloroplast relocation in rice.	Plant Physiol.			2022		
52210	36147492	Rashid M.A.R., Zhao Y., Azeem F., Zhao Y., Ahmed H.G.M., Atif R.M., Pan Y., Zhu X., Liang Y., Zhang H., Li D., Zhang Z., Li Z.	Unveiling the genetic architecture for lodging resistance in rice (<i>Oryza sativa</i>. L) by genome-wide association analyses.	Front Genet	13	960007	2022	FBOX349	OsFbox349, Os_F0252, OsFBA2, FBA2,  OsFBA2, FBA2
52211	36124989	Martin A.F., Tobimatsu Y., Lam P.Y., Matsumoto N., Tanaka T., Suzuki S., Kusumi R., Miyamoto T., Takeda-Kimura Y., Yamamura M., Koshiba T., Osakabe K., Osakabe Y., Sakamoto M., Umezawa T.	Lignocellulose molecular assembly and deconstruction properties of lignin-altered rice mutants.	Plant Physiol.			2022		
52212	36232465	Yuan Z., Pan J., Chen C., Tang Y., Zhang H., Guo J., Yang X., Chen L., Li C., Zhao K., Wang Q., Yang B., Sun C., Deng X., Wang P.	<i>DRB2</i> Modulates leaf rolling by Regulating Accumulation of MicroRNAs Related to Leaf Development in Rice.	Int J Mol Sci	23(19)		2022	DCL1,HYL1,HOX29,LF1,RL89,HOX33	Dcl1, OsDCL1, osDCL1, Os-DCL1, OsDCL1a, DCL1a,OsDRB1a, DRB1a, OsHYL1, OsDRB1-2, DRB1-2,Oshox29, OsHox29, OSHB5, HB5,HOX10, Oshox10, OsHox10, OsHB1, HB1, OSHB1, LF1/OsHB1, OsLF1, OsHDZ9, OsHDZIP9, HDZ9, HDZIP9,OsDRB2, DRB2, OsRL89, SRL10, OsSRL10,Oshox33, OsHox33, OSHB3, HB3, SIP22, OsSIP22, OsHDZ40, OsHDZIP40, HDZ40, HDZIP40
52213	35861433	He Y., Li L., Shi W., Tan J., Luo X., Zheng S., Chen W., Li J., Zhuang C., Jiang D.	Florigen repression complexes involving rice CENTRORADIALIS2 regulate grain size.	Plant Physiol.	190(2)	1260-1274	2022		
52214	36152809	Liu Y., Wu Q., Qin Z., Huang J.	Transcription factor OsNAC055 regulates GA-mediated lignin biosynthesis in rice straw.	Plant Sci.	325	111455	2022		
52215	36077438	Ma C., Li Q., Song Z., Su L., Tao W., Zhou B., Wang Q.	Irrigation with Magnetized Water Alleviates the Harmful Effect of Saline-Alkaline Stress on Rice Seedlings.	Int J Mol Sci	23(17)		2022		
52216	35861152	Wu X., Xie X., Yang S., Yin Q., Cao H., Dong X., Hui J., Liu Z., Jia Z., Mao C., Yuan L.	OsAMT1;1 and OsAMT1;2 Coordinate Root Morphological and Physiological Responses to Ammonium for Efficient Nitrogen Foraging in Rice.	Plant Cell Physiol.	63(9)	1309-1320	2022		
52217	36235331	Asif S., Kim E.G., Jang Y.H., Jan R., Kim N., Asaf S., Lubna, Farooq M., Kim K.M.	Identification of the <i>OsCML4</i> Gene in Rice Related to Salt Stress Using QTL Analysis.	Plants (Basel)	11(19)		2022	SOS3,CML4,IAA13,CBL1,CBL2,CBL5,CBL3	CBL4, OsCBL4, OsSOS3,OsCML4,OsIAA13, OsIAA1, OsiIAA1,OsCBL1, Os-CBL1,OsCBL2,OsCBL5,OsCBL3
52218	36195034	Zhu C.Q., Wei Q., Kong Y.L., Xu Q.S., Pan L., Zhu L.F., Tian W.H., Jin Q.Y., Yu Y.J., Zhang J.H.	Ammonium improved cell wall and cell membrane P reutilization and external P uptake in a putrescine and ethylene dependent pathway.	Plant Physiol. Biochem.	191	67-77	2022		
52219	36093745	Wang Z., Sun J., Zu X., Gong J., Deng H., Hang R., Zhang X., Liu C., Deng X., Luo L., Wei X., Song X., Cao X.	Pseudouridylation of chloroplast ribosomal RNA contributes to low temperature acclimation in rice.	New Phytol.	236(5)	1708-1720	2022	TCD3	OsTCD3, OsPUS1, PUS1
52220	36096762	Wang Y., Yang Z., Zhang M., Ai P.	A chloroplast-localized pentatricopeptide repeat protein involved in RNA editing and splicing and its effects on chloroplast development in rice.	BMC Plant Biol.	22(1)	437	2022	MORF8,ATPF,YCF3,WP2,SSA1	OsMORF8, OsMORF8b, MORF8b, OsMORF8-2, MORF8-2,atpF, OsatpF,ORF170, ycf3, IRF170, ycf3-1, ycf3-2,TRXZ, OsPAP10, PAP10, OsPAP10/OsTRXz, OsTRXz, TRXz, OsTrx25, Trx25,OSOTP 51, OSOTP51, OTP51, OsOTP51, OsSSA1
52221	36139868	Chen Y., Wang J., Nguyen N.K., Hwang B.K., Jwa N.S.	The NIN-Like Protein OsNLP2 Negatively Regulates Ferroptotic Cell Death and Immune Responses to <i>Magnaporthe oryzae</i> in Rice.	Antioxidants (Basel)	11(9)		2022	PIP2;7,WRKY104,RBOHB,PR10A,NLP2	OsPIP2;7, PIP2.7, PIP2-7, OsPIP2-6, OsPIP-3A, PIP-3A,OsWRKY104, CRPG32, OsCRPG32,rbohB, OsrbohB, Os rbohB, OsRbohB, OsNox1, Nox1, Os-RbohB, RbohB, OsRboh1, Rboh1,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsNLP2
52222	36247583	Chen S., Gistelinck K., Verbeke I., Van Damme EJM.	Differential effects of the recombinant type 1 ribosome-inactivating protein, OsRIP1, on growth of PSB-D and BY-2 cells.	Front Plant Sci	13	1019591	2022	RIP1.1	OsRIP1, RIP1, OsjRIP1.1
52223	36212323	Ninkuu V., Yan J., Zhang L., Fu Z., Yang T., Li S., Li B., Duan J., Ren J., Li G., Yang X., Zeng H.	Hrip1 mediates rice cell wall fortification and phytoalexins elicitation to confer immunity against <i>Magnaporthe oryzae</i>.	Front Plant Sci	13	980821	2022	CYP71Z7,ASMT1,CYP71Z2,THT1,CYP76M7,KSL10,_,_,_,KS8,SDR110C-MI3 ,CYP76M6,CYP71C1,KS4,_,CYP71Z21 ,4CL5,CYP76M5,IGL,CYP76M14,TS2,SDR110C-MS2,MAS,CPS2,CYP76M2,KS7,2ODD23,_,C4H2,CYP71X5,CYP76M8,CPS4,NOMT,PRX39,CCR21,SDR7-6,GGPPS2,_,SDR110C-MS3 	Oscyp71Z7, OsCYP71Z6, CYP71Z6,ZRP4, OMT, ASMT, OsASMT, OsASMT1, ASMT1, OsASMT13, OsCOMT19, COMT19,Oscyp71Z2,Os-THT1, OsTHT1,OsCYP76M7, CYP76M10, OsCYP76M10, OsCYP76-4, CYP76-4,OsKSL10, KS10, OsKS10, OsTPS33, TPS33, TPS21, OsTPS21,OsPAL04, PAL04, PAL, OsPAL7, PAL7,,,OsKS8, KS8, KSL8, OsKSL8, DTC2, OsDTC2, OsDTC2/OsKS8, OsTPS32, TPS17, OsTPS17, KSL11, OsKSL11,OsSDR110C-MI3,OsCYP76M6, OsCYP76-5, CYP76-5, OsCYP71T5, CYP71T5,OsCYP71C1,OsKS4, KS4, KSL4, OsKSL4, DTS2, OsDTS2, OsTPS16, TPS16, TPS8, OsTPS8,OsF5H1, F5H1, OsCAld5H1, CAld5H1, CYP84A5, OsCYP84A5,OsCYP71Z21 ,Os4CL5, 4CL3, Os4CL3,OsCYP76M5, OsCYP76-2, CYP76-2, OsCYP71T4, CYP71T4,OsIGL, OsIgl,OsCYP76M14, OsCYP76-1, CYP76-1,OsTS2,OsSDR110C-MS2, OsMAS1, MAS1, OsMS2, MS2, MAS2,OsMAS, MAS1, OsMAS1, OsMAS/SDR110C-MS1, SDR110C-MS1, OsSDR110C-MS1, OsMS1, MS1,OsCPS2, cps2, OsCPS2ent, CYC2, OsCyc2, OsCYC2, OsCPSL1, cpsl1, OsCyc2/OsCPS2, OsTPS7, Os-CPS2, TPS13, OsTPS13,OsCYP76M2, OsCYP76-11, CYP76-11,OsKS7, KS7, KSL7, OsKSL7, DTC1, OsDTC1, OsKS3, OsDTC1/OsKS7, OsTPS6, TPS6, TPS38, OsTPS38,2-ODD23, Os2-ODD23, Os2ODD23,,OsC4H, OsC4HL, C4H, OsC4H2,OsCYP71Z, CYP71Z, OsCYP71X5,OsCYP76M8, OsCYP76-3, CYP76-3,OsCPS4, CYC1, OsCYC1, OsCyc1, cpsl3, OsCPSL3, OsCPSsyn, OsCyc1/OsCPS4, OsTPS15, Os-CPS4, TPS11, OsTPS11,OsNOMT, COMTL3, OsCOMTL3, OsCOMT29, COMT29,prx39, OsPRX39, OsPRX-A2, PRX-A2, POD39, OsPOD39,OsCCR21 ,OsSDR7-6,OsGGPPS2, OsGRP, GRP, OsGGPPS1, GGPPS1,,OsSDR110C-MS3
52224	36142555	Xu P., Wu T., Ali A., Wang J., Fang Y., Qiang R., Liu Y., Tian Y., Liu S., Zhang H., Liao Y., Chen X., Shoaib F., Sun C., Xu Z., Xia D., Zhou H., Wu X.	Rice beta-Glucosidase 4 (Os1betaGlu4) Regulates the Hull Pigmentation via Accumulation of Salicylic Acid.	Int J Mol Sci	23(18)		2022	BH1	BGLU4, Os1bglu4, Os1Bglu4, Os1BGlu4, OsBH1
52225	36247649	Liu Z., Bi S., Meng J., Liu T., Li P., Yu C., Peng X.	Arbuscular mycorrhizal fungi enhanced rice proline metabolism under low temperature with nitric oxide involvement.	Front Plant Sci	13	962460	2022	ALDH18B2,OAT	P5CS2, OsP5CS2, OsALDH18B2 ,OsOAT, delta-OAT
52226	36138316	Da X., Guo J., Yan P., Yang C., Zhao H., Li W., Kong Y., Jiang R., He Y., Xu J., Xu O., Mao C., Mo X.	Characterizing membrane anchoring of leaf-form ferredoxin-NADP+ oxidoreductase in rice.	Plant Cell Environ.			2022		
52227	35984735	Jian L., Kang K., Choi Y., Suh M.C., Paek N.C.	Mutation of OsMYB60 reduces rice resilience to drought stress by attenuating cuticular wax biosynthesis.	Plant J.	112(2)	339-351	2022		
52228	36135191	Chen Q., Hu Y., Yang L., Zhu B., Luo F.	Phosphorus Regulates the Level of Signaling Molecules in Rice to Reduce Cadmium Toxicity.	Curr Issues Mol Biol	44(9)	4070-4086	2022	IRT1,_,ACO2,MRP1,HMA2	OsIRT1, ZIP10, OsZIP10, OsZIP12, ZIP12,OsNIA1, OsNia1, NIA1, Nia1, OsNR, NR, OsNR2, NR2, NIA2,OsACO2, OsACO1,OsABCC1, ABCC1, OsABCC1-1, OsABCC1-2, OsMRP1,OsHMA2, osHMA2, OsHMA2v 
52229	36164964	Kim Y., Takahashi S., Obayashi H., Miyao M.	Role of glycerophosphodiester phosphodiesterase in rice leaf blades in elevated CO2 environments.	Plant Biol (Stuttg)			2022		
52230	35975452	Jiao Z., Yin L., Zhang Q., Xu W., Jia Y., Xia K., Zhang M.	The putative obtusifoliol 14alpha-demethylase OsCYP51H3 affects multiple aspects of rice growth and development.	Physiol Plant	174(5)	e13764	2022		
52231	36139879	Kondo Y., Rikiishi K., Sugimoto M.	Rice Nudix hydrolase OsNUDX2 Sanitizes Oxidized Nucleotides.	Antioxidants (Basel)	11(9)		2022	NUDX3,NUDX15,NUDX2,NUDX9,NUDX7,NUDX5,NUDX13,DCP2,NUDX8,NUDX1,NUDX14,NUDX17,NUDX4,NUDX6,NUDX10,NUDX12,NUDX11	OsNUDX3,OsNUDX15,OsNUDX2,OsNUDX9,OsNUDX7, OsNUDX14, NUDX14,OsNUDX5,OsNUDX13,OsDCP2, NUDX16, OsNUDX16,OsNUDX8, OsNUDX21, NUDX21,OsNUDX1,OsNUDX14,OsNUDX17,OsNUDX4,OsNUDX6,OsNUDX10,OsNUDX12, OsSTA61,OsNUDX11
52232	36050871	Yoshihisa A., Yoshimura S., Shimizu M., Sato S., Matsuno S., Mine A., Yamaguchi K., Kawasaki T.	The rice OsERF101 transcription factor regulates the NLR Xa1-mediated immunity induced by perception of TAL effectors.	New Phytol.	236(4)	1441-1454	2022	ERF101,XA41,XA1	OsERF#101, OsERF101, OsDERF6, DERF6, AP2/EREBP#089, AP2/EREBP89, OsRap2.6, Rap2.6, ERF113, OsERF113, OsERF101/OsRAP2.6,OsSWEET14, SWEET14, Os11N3, Os-11N3, 11N3, Xa41(t), xa41, Os11N3/SWEET14, OsSWEET14/Os11N3,Xa1(Xe), Xe, Xa1, Xa-1
52233	35959609	Zhong R., Lee C., Cui D., Phillips D.R., Adams E.R., Jeong H.Y., Jung K.H., Ye Z.H.	Identification of xylan arabinosyl 2-O-xylosyltransferases catalyzing the addition of 2-O-xylosyl residue onto arabinosyl side chains of xylan in grass species.	Plant J.	112(1)	193-206	2022		
52234	36186033	Yin M., Wang R., Li S., Luo M., Wei W., Wang M., Jiang J., Lin Y., Zhao Y.	High <i>Sclerotinia sclerotiorum</i> resistance in rapeseed plant has been achieved by <i>OsPGIP6</i>.	Front Plant Sci	13	970716	2022	PGIP1,PGIP2,PGIP6,PGIP4,PGIP3	Ospgip1, pgip1, OsPGIP1,Ospgip2, pgip2, OsPGIP2,Ospgip6, pgip6, OsPGIP6,Ospgip4, pgip4, OsPGIP4,Ospgip3, pgip3, OsPGIP3
52235	36232356	Xie Z., Zhao B., Zhang M., Sang X., Zhao F., Feng P., He G., Zhu X.	Mutation of <i>OsSAC3</i>, Encoding the xanthine dehydrogenase, Caused Early Senescence in Rice.	Int J Mol Sci	23(19)		2022	XA41,SWEET6A,SWEET3A,XDH1	OsSWEET14, SWEET14, Os11N3, Os-11N3, 11N3, Xa41(t), xa41, Os11N3/SWEET14, OsSWEET14/Os11N3,OsSWEET6a, SWEET6a,OsSWEET3a, SWEET3a,OsXDH1, OsSAC3, SAC3
52236	36232648	Xu J.H., Irshad F., Yan Y., Li C.	Loss of Function of the RRMF Domain in OsROS1a Causes Sterility in Rice (<i>Oryza sativa</i> L.).	Int J Mol Sci	23(19)		2022	TA2,CYP704B2,PKS10	ROS1A, ROS1a, DME1, OsROS1A, OsROS1, ROS1, mOsROS1, ROS1A/DNG702, DNG702, OsDNG702,OsCYP704B2,OsPKS10, OsPKS2, PKS2, OsCHS10, CHS10
52237	36235370	Li L., Wu X., Chen J., Wang S., Wan Y., Ji H., Wen Y., Zhang J.	Genetic Dissection of Epistatic Interactions Contributing Yield-Related Agronomic Traits in Rice Using the Compressed Mixed Model.	Plants (Basel)	11(19)		2022	BZR1,LCRN1,EIP8,LOG1	OsBZR1, Os BZR1, OsBES1-6, BES1-6,OsSPL3, SPL3, OsLCRN1,OsEIP8, OsVOZ1, VOZ1 ,OsLOG1, LOG, Log, log, OsLOG
52238	36247610	Xi Y., Ling Q., Zhou Y., Liu X., Qian Y.	ZmNAC074, a maize stress-responsive NAC transcription factor, confers heat stress tolerance in transgenic <i>Arabidopsis</i>.	Front Plant Sci	13	986628	2022		
52239	36142708	Zhang Y., Iqbal M.F., Wang Y., Qian K., Xiang J., Xu G., Fan X.	OsTBP2.1, a TATA-binding protein, Alters the Ratio of <i>OsNRT2.3b</i> to <i>OsNRT2.3a</i> and Improves Rice grain yield.	Int J Mol Sci	23(18)		2022	HTNE,TBP2.1,NRT2.1,NRT2.2	NRT2.3, OsNRT2.3, OsNRT2;1, OsNRT2.3a, OsNRT2.3b, OsNRT2;3a, OsNRT2.5 ,OsTBP2.1,OsNRT2.1, OsNRT2.2,OsNRT2.2, OsNRT2.1
52240	36111599	Mohammed K.F.A., Kaul T., Agrawal P.K., Thangaraj A., Kaul R., Sopory S.K.	Function identification and characterization of <i>Oryza sativa</i> ZRT and IRT-like proteins computationally for nutrition and biofortification in rice.	J. Biomol. Struct. Dyn.		1-21	2022		
52241	36073837	Yan Y., Li C., Liu Z., Zhuang J.J., Kong J.R., Yang Z.K., Yu J., Alam M.S., Ruan C.C., Zhang H.M., Xu J.H.	A new demethylase gene OsDML4 involved in high temperature increased grain chalkiness in rice (Oryza sativa L.).	J. Exp. Bot.			2022	DML4	OsDML4
52242	36097113	Verma R.K., Chetia S.K., Sharma V., Devi K., Kumar A., Modi M.K.	Identification and characterization of genes for drought tolerance in upland rice cultivar 'Banglami' of North East India.	Mol. Biol. Rep.			2022		
52243	36168109	Choi C., Im J.H., Lee J., Kwon S.I., Kim W.Y., Park S.R., Hwang D.J.	OsDWD1 E3 ligase-mediated OsNPR1 degradation suppresses basal defense in rice.	Plant J.			2022	CUL4,NH1,WD40-171	OsCUL4,OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2, DLN5, OsDLN5,  OsBTBA1, BTBA1,OsWD40-171,  OsDWD63, DWD63, OsDWD1, DWD1
52244	36071575	Lee K.W., Chen J.J.W., Wu C.S., Chang H.C., Chen H.Y., Kuo H.H., Lee Y.S., Chang Y.L., Chang H.C., Shiue S.Y., Wu Y.C., Ho Y.C., Chen P.W.	Auxin plays a role in the adaptation of rice to anaerobic germination and seedling establishment.	Plant Cell Environ.			2022		
52245	36142741	Zhang Y., Wang C., Wang C., Yun L., Song L., Idrees M., Liu H., Zhang Q., Yang J., Zheng X., Zhang Z., Gao J.	<i>OsHsfB4b</i> Confers Enhanced Drought Tolerance in Transgenic Arabidopsis and Rice.	Int J Mol Sci	23(18)		2022	HSFA2D,HSFA2A,HSFC2A,HSFA1,SPL7,HSFB4B,HSFA3,HSFB2A,HSFC1B,HSFC1A,HSFB2B,HSFB4A,HSFA4A,HSFB4D,HSFB4C,HSFA7,HSFA9,HSFB1,HSFB2C,HSFA6,HSFA2E,HSFC2B,HSFA2C,HSFA2B,HSFA5	HSfA2d, OsHsfA2d, OsHsf-08, rHsf7, HSF08, OsHSF8, HSF8, HSF7, OsHSF7, OsHSFA2dI, OsHSFA2dII, OsHSFA2dIII, OsHsfA6b, HsfA6b, OsHsf2d, Hsf2d,HSfA2a, OsHsfA2a, OsHsf-11, rHsf4, OsHSF11, HSF11, HSF4, RHSP2, OsHsfA2a-1, OsHsfA2a-2, OsHsfA2a-3, OsHsfA2a-4, OsHsfA2a-5, OsHsfA2a-6, OsHsfA2e, HsfA2e ,HSfC2a, OsHsfC2a, OsHsf-05, HSF05, OsHSF5, HSF5,OsHsfA1, HsfA1, OsHSF13, HSF13, OsHsf-13, HSF3, rHsf3, OsHsfA1a,spl7, HSFA4D, HSF10, HSF15, OsHSF15, SP17, OsHsf-15, rHsf10, OsHsfA4d, HSfA4d, lrd13, HSF1,HSFB4b, OsHSFB4b, OsHsf-19, OsHSF19, rHsf12, OsHSF12, HSF12, HSF19,HSfA3, OsHsfA3, OsHsf-07, HSF07, OsHSF7, HSF7, DLN57, OsDLN57,HSfB2a, OsHsfB2a, OsHsf-14, rHsf1, HSF1, HSF14, OsHSF14,OsHsfC1b, HsfC1b, HSF03, OsHsf-03, OsHSF3, HSF3, HSF11,  rHsf11,HSfC1a, OsHsfC1a, OsHsf-02, OsHSF2, HSF2, rHsf13, HSF02, HSF13,HSfB2b, OsHsfB2b, OsHsf-21, rHsf2, HSF2, HSF21, OsHSF21, OsHSF7,HSfB4a, OsHsfB4a, OsHsf-20, HSF20, OsHSF20,OsHsfA4a, OsHsf-04, HSFA4B, HSF04, OsHSF4, HSF4, HSF9, OsHsfA4b, OsHSF9,OsHsfB4d, HSfB4d, OsHsf-10, HSF10, OsHSF10,HSfB4c, OsHsfB4c, OsHsf-22, HSF22, OsHSF22,OsHsfA7, OsHsf-01, HSFA6B, HSF01, OsHSF1, HSF1, OsEnS-9, OsHsfA7a, HsfA7a ,HSfA9, OsHsfA9, OsHsf-09, rHsf8, HSF09, OsHSF9, HSF9, HSF8, OsHsfA8, HsfA8 ,HSfB1, OsHsfB1, OsHsf-23, HSF23, OsHsf23, OsHSF23, TBF1 ,HSfB2c, OsHsfB2c, OsHsf-24, HSF24, OsHSF24 ,HSfA6, OsHsfA6, OsHsf-17, HSF17, OsHSF17, HSFA6A, OsHsfA2f, HsfA2f, OsHsfA7b, HsfA7b,HSfA2e, OsHsfA2e, OsHsf-12, OsHSF12, HSF12, OsHsfA2a, HsfA2a,HSfC2b, OsHsfC2b, OsHsf-16, HSF16, OsHSF16,HSfA2c, OsHsfA2c, OsHsf-25, rHsf6, OsHSF6, HSF25, OsHSF25, HSF6, OsHsfA6a, HsfA6a ,HSfA2b, OsHsfA2b, OsHsf-18, rHsf5, HS1, HSF18, OsHSF18, HSF5, OsHSF5,HSfA5, OsHsfA5, OsHsf-06, HSF06, OsHSF6, HSF6
52246	36186070	Jadoon S., Qin Q., Shi W., Longfeng Y., Hou S.	Rice protein phosphatase 1 regulatory subunits OsINH2 and OsINH3 participate actively in growth and adaptive responses under abscisic acid.	Front Plant Sci	13	990575	2022	SAPK8,P5CS,PP47,PP83,PP101,PP41,INH3,INH2,LEA3-1,ONAC2,SAPK3,LIP19,PP5,SAPK1,SAPK2,SAPK9	OsSAPK8, OsSnRK2.8, SnRK2.8,OsP5CS, P5CS1, OsP5CS1, OsALDH18B1, ALDH18B1, OsP5CS-1, P5CS-1,OsPP47, OsTOPP4, TOPP4,OsPP83, OsTOPP2, TOPP2,OsPP101, OsTOPP1, TOPP1,OsPP41, OsTOPP3, TOPP3,OsINH3,OsINH2,OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3, OsLEA3A, LEA3A,SNAC1, snac1, OsNAC9, ONAC002, ONAC2, ONAC033, ONAC33, ONAC043, ONAC43, ONAC044, ONAC44, OsNAC19, NAC19, SNAC1/ONAC002, OsSNAC1, OsNAC9, OsNAC1,OsSAPK3, REK, OsSnRK2.3, SnRK2.3,Lip19, lip19, OsLIP9, OsbZIP38, bZIP38,OsPP5, OsTOPP5, TOPP5,OsSAPK1, OsSnRK2.1, SnRK2.1,OsSAPK2, OsSnRK2.2, SnRK2.2,OsSAPK9, OsSnRK2.9, SnRK2.9
52247	35904032	Huang Y., Dong H., Mou C., Wang P., Hao Q., Zhang M., Wu H., Zhang F., Ma T., Miao R., Fu K., Chen Y., Zhu Z., Chen C., Tong Q., Wang Z., Zhou S., Liu X., Liu S., Tian Y., Jiang L., Wan J.	Ribonuclease H-like gene SMALL GRAIN2 regulates grain size.in rice through brassinosteroid signaling pathway.	J Integr Plant Biol	64(10)	1883-1900	2022		
52248	36172079	Juurakko C.L., Bredow M., diCenzo GC., Walker V.K.	Cold-inducible promoter-driven knockdown of <i>Brachypodium</i> antifreeze proteins confers freezing and phytopathogen susceptibility.	Plant Direct	6(9)	e449	2022		
52249	36114668	Chen C.Q., Tian X.Y., Li J., Bai S., Zhang Z.Y., Li Y., Cao H.R., Chen Z.C.	Two central circadian oscillators OsPRR59 and OsPRR95 modulate magnesium homeostasis and carbon fixation in rice.	Mol Plant	15(10)	1602-1614	2022		
52250	35866684	Zhang Y., Han E., Peng Y., Wang Y., Wang Y., Geng Z., Xu Y., Geng H., Qian Y., Ma S.	Rice co-expression network analysis identifies gene modules associated with agronomic traits.	Plant Physiol.	190(2)	1526-1542	2022	OPL1	OsOPL1
52251	36204076	Kim S.H., Shim K.C., Lee H.S., Jeon Y.A., Adeva C., Luong N.H., Ahn S.N.	Brassinosteroid biosynthesis gene <i>OsD2</i> is associated with low-temperature germinability in rice.	Front Plant Sci	13	985559	2022	SG2,BU1,D2,DLT,BIN2,BRD1,BZR1,CPD1,GSK4,D61,D11	OsSERK1, SERK1, OsBAK1, BAK1, OsSERK1/OsBAK1, OsBISERK1, BISERK1, OsSerk1, OsBAK1-1, 08SG2/OsBAK1, 08SG2, OsSG2,ILI4, OsILI4 , OsBU1, BU1/ILI4, OsbHLH172, bHLH172,d2, dwf2, CYP90D2, D2/CYP90D2, OsD2, SMG11, OsSMG11, D2/SMG11, OsD2a, OsD2b,dlt, OsGRAS32, OsDLT, OsDLT1, DTL1, OsGRAS-32, OsGRAS32, GRAS-32, GRAS32, SMOS2/DLT, SMOS2, OsSMOS2, OsGS6, GS6,GSK2, Os GSK2, OsGSK2, Os BIN2, OsBIN2, BIN2/GSK2, OsSK22/OsGSK7, OsSK22, OsGSK7, SK22, GSK7, OsSK22/GSK2 ,brd1, OsDWARF, DWARF, OsBR6ox, BR6ox, CYP85A1, CYP85A4, OsDWF, CYP85A1/OsDWARF, OsBRD1, OsCYP85A1,OsBZR1, Os BZR1, OsBES1-6, BES1-6,OsCPD1, CYP90A3, CYP90A3/OsCPD1, CPD, OsCPD2, CPD2,OsSK23/OsGSK4, OsSK23, OsGSK4, SK23, OsGSK3, GSK3,d61*, dwf42, d61, OsBRI1, OSBRI1, BRI1, Os BRI1, Osbri1, OsBRKq1, BRKq1,d11(d8), dwf10, d8, D11/CYP724B1, d11, CYP724B1, GNS4, OsD11, PMM1, OsPMM1, PMM1/D11, NBG4, OsCPB1, CPB1, CPB1/D11
52252	36172551	Wang Y., Yang S., Li C., Hu T., Hou S., Bai Q., Ji X., Xu F., Guo C., Huang M., Cai Y., Liu J.	The plasma membrane-localized OsNIP1;2 mediates internal aluminum detoxification in rice.	Front Plant Sci	13	970270	2022	NIP1;2	OsNIP1;2, NIP1-2, OsNIP1.2, NIP1.2
52253	36183810	Yu H., Zhang L., He X., Zhang T., Wang C., Lu J., He X., Chen K., Gu W., Cheng S., Hu Y., Yao B., Jian A., Yu X., Zheng H., You S., Wang Q., Lei D., Jiang L., Zhao Z., Wan J.	OsPHS1 is required for both male and female gamete development in rice.	Plant Sci.	325	111480	2022		
52254	36120845	Yoon J., Baek G., Pasriga R., Tun W., Min C.W., Kim S.T., Cho L.H., An G.	Homeobox transcription factors OsZHD1 and OsZHD2 induce inflorescence meristem activity at floral transition in rice.	Plant Cell Environ.			2022		
52255	36235396	Li Z.H., Wang S.L., Zhu Y.J., Fan Y.Y., Huang D.R., Zhu A.K., Zhuang J.Y., Liang Y., Zhang Z.H.	Control of grain shape and Size in Rice by Two Functional Alleles of <i>OsPUB3</i> in Varied Genetic Background.	Plants (Basel)	11(19)		2022	PUB3	OsPUB3, OsPUB03,  OsPUB3, PUB3
52256	36190337	Liu H., Huang J., Zhang X., Liu G., Liang W., Zhu G., Dong M., Li M., Zhang J., Yang W., Xiao W., Cheung A.Y., Tao L.Z.	The RAC/ROP GTPase Activator OsRopGEF10 functions in crown root development by regulating cytokinin signaling in rice.	Plant Cell			2022		
52257	35972376	Tang J., Tian X., Mei E., He M., Gao J., Yu J., Xu M., Liu J., Song L., Li X., Wang Z., Guan Q., Zhao Z., Wang C., Bu Q.	WRKY53 negatively regulates rice cold tolerance at the booting stage by fine-tuning anther gibberellin levels.	Plant Cell	34(11)	4495-4515	2022		
52258	36151470	Liu Y., Wang H., Jiang Z., Wang W., Xu R., Wang Q., Zhang Z., Li A., Liang Y., Ou S., Liu X., Cao S., Tong H., Wang Y., Zhou F., Liao H., Hu B., Chu C.	Author Correction: Genomic basis of geographical adaptation to soil nitrogen in rice.	Nature	610(7931)	E4	2022		
52259	35904763	You J., Xiao W., Zhou Y., Shen W., Ye L., Yu P., Yu G., Duan Q., Zhang X., He Z., Xiang Y., Sang X., Li Y., Zhao F., Ling Y., He G., Zhang T.	The APC/CTAD1-WIDE LEAF 1-NARROW LEAF 1 pathway controls leaf width in rice.	Plant Cell	34(11)	4313-4328	2022		
52260	35972379	Zhou Y., Ma B., Tao J.J., Yin C.C., Hu Y., Huang Y.H., Wei W., Xin P.Y., Chu J.F., Zhang W.K., Chen S.Y., Zhang J.S.	Rice EIL1 interacts with OsIAAs to regulate auxin biosynthesis mediated by the tryptophan aminotransferase MHZ10/OsTAR2 during root ethylene responses.	Plant Cell	34(11)	4366-4387	2022		
52261	35929789	Li Q., Zhou L., Chen Y., Xiao N., Zhang D., Zhang M., Wang W., Zhang C., Zhang A., Li H., Chen J., Gao Y.	Phytochrome interacting factor regulates stomatal aperture by coordinating red light and ABSCISIC ACID.	Plant Cell	34(11)	4293-4312	2022		
52262	36245122	Li G.B., He J.X., Wu J.L., Wang H., Zhang X., Liu J., Hu X.H., Zhu Y., Shen S., Bai Y.F., Yao Z.L., Liu X.X., Zhao J.H., Li D.Q., Li Y., Huang F., Huang Y.Y., Zhao Z.X., Zhang J.W., Zhou S.X., Ji Y.P., Pu M., Qin P., Li S., Chen X., Wang J., He M., Li W., Wu X.J., Xu Z.J., Wang W.M., Fan J.	Overproduction of OsRACK1A, an effector-targeted scaffold protein promoting OsRBOHB-mediated ROS production, confers rice floral resistance to false smut disease without yield penalty.	Mol Plant	15(11)	1790-1806	2022	RBOHB,PR10B,SGT1,RACK1,RAC1,RSOSPR10	rbohB, OsrbohB, Os rbohB, OsRbohB, OsNox1, Nox1, Os-RbohB, RbohB, OsRboh1, Rboh1,RPR10b, PR-10b, PR10b, PBZ1, PBZ-1, OsPBZc, OsPR10b, BetV, OsBetV,OsSgt1, OsSGT1, Os SGT1,RACK1A, RWD, OsWD40-21, OsRACK1, OsRACK1A,OsRAC1, OsRac1, Os Rac1, Rac1, Os-Rac1,RSOsPR10, RsOsPR10a, OsPR10a, OsPR10alpha, OsPR10, PR10, OsBETV1, BETV1
52263	36219491	Yang Y., Ma X., Xia H., Wang L., Chen S., Xu K., Yang F., Zou Y., Wang Y., Zhu J., Li T., Luo Z., Hu S., Liao Z., Luo L., Yu S.	Natural variation of Alfin-like family affects seed size and drought tolerance in rice.	Plant J.			2022	PHD9,AL3,PHD1,PHD33,PHD22,PHD21,AL1.1,PHD35,PHD40,PHD24	OsPHD9, OsAL2, AL2,OsAL3,OsPHD1, OsAL1.2, AL1.2, OsAL1, AL1,OsPHD33, OsAL7.1, AL7.1, OsAL7, AL7,OsPHD22, OsAL5.1, AL5.1, OsAL5, AL5,OsPHD21, OsAL4, AL4,OsAL1.1,OsPHD35, OsAL7.2, AL7.2, OsAL8, AL8,OsPHD40, OsAL11, AL11, OsAL9, AL9,OsPHD24, OsAL5.2, AL5.2, OsAL6, AL6
52264	36284171	Huang Y., Li J., Huang Q.	Physiologic and molecular responses of indica-japonica subspecies tetraploid rice seed germination to ion beams.	Sci Rep	12(1)	17847	2022	AMY1A,AMY3E,GNP1,AMY3B,GA2OX9,D18,GA2OX5	Amy1A/C*(RAmy1A/C), alpha Amy7, AMY1.1, Amy1A, RAmy1A/C, Amy1A/C*, Amy1, Amy1A_C, OsAmy1A, alphaAmy7-C, RAmy1A, AmyI-1, OsAmyI-1, OsRamy1A,Amy3D/E*(RAmy3D/E), alpha Amy8, alphaAmy8, AmyII-3, AMY1.4, Amy3E, Amy3D/E*, RAmy3D/E, Amy9, RAmy3E, alphaAmy8-C, AMY3E/AMY1.4, OsAmy3E, OsRamy3E,GA20OX1, OsGA20ox1, 20ox1, GA20ox-1, ga20ox1, Os20ox, C20OX2, OsGA20ox2, OsGA20ox-1, GA20ox1, OsGNP1,Amy3A/B/C*(RAmy3A/B/C), alpha Amy6, AmyII-5, AMY1.6, Amy1.6, Amy3B, BRAmy3A/B/C, Amy3A/B/C*, Amy6, RAmy3B, alphaAmy6-C, OsRamy3B, OsAmy3C,OsGA2ox9, GA2ox7, 2-ODD35, Os2-ODD35, 2ODD35, Os2ODD35,d18-h  (d18-I, d18h), dwf15, d25, d18, d18-k, d18-AD, d18-dy, OsGA3ox2, ga3ox2, OsGA3OX2, GA3OX2, OsGA3ox-2, GA3ox-2, GA3ox1,OsGA2ox5, 2-ODD32, Os2-ODD32, 2ODD32, Os2ODD32
52265	36352872	Nguyen N.K., Wang J., Liu D., Hwang B.K., Jwa N.S.	Rice iron storage protein Ferritin 2 (OsFER2) positively regulates ferroptotic cell death and defense responses against <i>Magnaporthe oryzae</i>.	Front Plant Sci	13	1019669	2022	VIT1,FER2,RBOHB,MKK1,_,NADP-ME2,DSG1	OsVIT2, OsVIT1, VIT2, ,OsFER2, OsFer2,rbohB, OsrbohB, Os rbohB, OsRbohB, OsNox1, Nox1, Os-RbohB, RbohB, OsRboh1, Rboh1,OsMKK1, OsMEK2, MEK2, OsMAPKK1, MAPKK1, OsMAP2K2, MAP2K2,OsPAL02, PAL02, OsPAL5, PAL5, OsPAL2. PAL2, OsPAL1,OscytME1, OsNADP-ME2-3, NADP-ME2-3,OsMAPK6, MAPK6, OsMPK6, OsSIPK, SIPK, OsMAPK1, MAPK1, MPK1, OsMPK1, MPK6, OsDSG1
52266	36292930	Luo C., Min W., Akhtar M., Lu X., Bai X., Zhang Y., Tian L., Li P.	Melatonin Enhances Drought Tolerance in Rice Seedlings by Modulating Antioxidant Systems, Osmoregulation, and Corresponding Gene Expression.	Int J Mol Sci	23(20)		2022	SPS1,P5CS,APX2,MPG1,ATP6,SODB,TDC2,RSUS7,NOE1,LOX1	sps1, OsSPS1, SPS,OsP5CS, P5CS1, OsP5CS1, OsALDH18B1, ALDH18B1, OsP5CS-1, P5CS-1,OsAPX2, OsAPx02, APXb, OsAPx2, OSAPX2, APx2, cAPX, OsAPX1, APX1,OsMPG1, OsVTC1-1, VTC1-1,atp6, OsPOX1, prx3, POX1,SodB, Fe-SOD, Fe- SOD, OsFe-SOD, Fe+-SOD, OsFe+-SOD, OsFe-SODa, OsFe-SODb, OsFeSODb, FeSODb, OsFSD1.2, FSD1.2, FeSOD2, OsFSD2, FSD2, OsFSD1, FSD1, ALM1, OsALM1,OsTDC2, OsTDC3,SUS7, SS7, OsScS7, RSs7, RSus7, OsSUS7,CATC, OsCat, OsCatC, OsCATC, OsNOE1, noe1, catC, OsCATC, CAT3, OsCAT3, LLM9428, OsLLM9428,OsLOX1, OsLOX5
52267	36303433	Xiang Y.H., Yu J.J., Liao B., Shan J.X., Ye W.W., Dong N.Q., Guo T., Kan Y., Zhang H., Yang Y.B., Li Y.C., Zhao H.Y., Yu H.X., Lu Z.Q., Lin H.X.	An alpha/beta hydrolase family member negatively regulates salt tolerance but promotes flowering through three distinct functions in rice.	Mol Plant			2022		
52268	36388546	Lin X., Xiao Y., Song Y., Gan C., Deng X., Wang P., Liu J., Jiang Z., Peng L., Zhou D., He X., Bian J., Zhu C., Liu B., He H., Xu J.	Rice microtubule-associated protein OsMAP65-3.1, but not OsMAP65-3.2, plays a critical role in phragmoplast microtubule organization in cytokinesis.	Front Plant Sci	13	1030247	2022	MYB3R1L,_,DLN143,MYB3R2,_,_,_,_,MAP65-3.1,_,_,_,MYB3R1,MAP65-3.2,_	OsMYB3R1-L, MYB3R1-L,,OsDLN143, OsMYB3R2-L, MYB3R2-L,OsMYB3R-2, OsMYB3R2, OsMSL07, MSL07, MSL7, DLN28, OsDLN28,,,,,OsMAP65-3.1,,,,OsMYB3R-1, OsMYB3R1, Os2R_MYB95, 2R_MYB95,OsMAP65-3.2,
52269	36288411	Taoka K.I., Kawahara I., Shinya S., Harada K.I., Yamashita E., Shimatani Z., Furuita K., Muranaka T., Oyama T., Terada R., Nakagawa A., Fujiwara T., Tsuji H., Kojima C.	Multifunctional chemical inhibitors of the florigen activation?complex discovered by structure-based high-throughput screening.	Plant J.			2022		
52270	36224499	Wang T., Li X.K., Liu X., Yang X.Q., Li Y.J., Hou B.K.	Rice glycosyltransferase gene UGT2 functions in salt stress tolerance under the regulation of bZIP23 transcription factor.	Plant Cell Rep.			2022	BZIP23,UGT2	OsbZIP23, OsAREB1, OsABF2, Osbzip23, OsAREB2, OsZIP23, ZIP23,OsUGT2
52271	36264202	Tripathi D.K., Rai P., Kandhol N., Kumar A., Sahi S., Corpas F.J., Sharma S., Singh V.P.	Silicon Palliates Chromium Toxicity through the Formation of Root Hairs in Rice (Oryza Sativa) Mediated by GSH and IAA.	Plant Cell Physiol.			2022		
52272	36388489	Farooq M., Khan M.A., Zhao D.D., Asif S., Kim E.G., Jang Y.H., Park J.R., Lee I.J., Kim K.M.	Extrinsic role of gibberellin mitigating salinity effect in different rice genotypes.	Front Plant Sci	13	1041181	2022	GA2OX1,AMY1C,GA2OX3,AMY3E,KAO,AMY1A,GA2OX9,CPS1,KS1	OsGA2ox1, ga2ox-1, OsGA2ox-1, ga2ox, ga2ox 1, GA2ox1,Amy1A/C*(RAmy1A/C), alpha Amy10, Amy1C, RAmy1A/C, Amy1A/C*, Amy3, RAmy1C, OsAmy1C, alphaAmy10-C,OsGA2ox3, ga2ox 3, OsGA2ox-3, GA2ox3, GA2ox-3, GA2ox4,Amy3D/E*(RAmy3D/E), alpha Amy8, alphaAmy8, AmyII-3, AMY1.4, Amy3E, Amy3D/E*, RAmy3D/E, Amy9, RAmy3E, alphaAmy8-C, AMY3E/AMY1.4, OsAmy3E, OsRamy3E,OsKAO, kao, CYP88A5, OSKAO, Os KAO, RPE1, KO1,Amy1A/C*(RAmy1A/C), alpha Amy7, AMY1.1, Amy1A, RAmy1A/C, Amy1A/C*, Amy1, Amy1A_C, OsAmy1A, alphaAmy7-C, RAmy1A, AmyI-1, OsAmyI-1, OsRamy1A,OsGA2ox9, GA2ox7, 2-ODD35, Os2-ODD35, 2ODD35, Os2ODD35,OsCPS1, OsCPS1ent, OsCPS, Os CPS1, OsTPS4, TPS4, TPS29, OsTPS29, OsCPS1-L, OsCPS1-S,OsKS1, KS1, KS1A, KSL1, OsKSL1, OsKS1A, OsKS1B, OsKS1C, Ks1, Os KS1, OsTPS26, TPS6, OsTPS6
52273	36361567	Ling C., Wang X., Li Z., He Y., Li Y.	Effects and Mechanism of Enhanced UV-B Radiation on the flag leaf Angle of Rice.	Int J Mol Sci	23(21)		2022	GW6,ILA1,ARF7A,ILI5,D2	OsGSR1, GSR1, OsGASR7, GASR7, OsGW6, OsGASR7/GW6,OsILA1, OsACTPK4, ACTPK4, OsMAPKKK43, MAPKKK43,OsARF7a, OsARF19, ARF19, OsARF7,ILI5, OsILI5, PGL2, OsPGL2, Os170, OsBUL1, BUL1, ILI5/PGL2, OsbHLH170, bHLH170,d2, dwf2, CYP90D2, D2/CYP90D2, OsD2, SMG11, OsSMG11, D2/SMG11, OsD2a, OsD2b
52274	36181524	He Y., Chen W., Tan J., Luo X., Zhou Y., Gong X., Yao J., Zhuang C., Jiang D.	rice CENTRORADIALIS 2 regulates seed germination and salt tolerance via ABA-mediated pathway.	Theor. Appl. Genet.			2022		
52275	36201102	Mannu J., Latha A.M., Rajagopal S., Lalitha H.D.A., Muthurajan R., Loganathan A., Subbarayalu M., Ramasamy G., Jegadeesan R.	Whole genome sequencing of ASD 16 and ADT 43 to identify predominant grain size and starch associated alleles in rice.	Mol. Biol. Rep.			2022		
52276	35789265	Peng F., Li C., Lu C., Li Y., Xu P., Liang G.	IRONMAN peptide interacts with OsHRZ1 and OsHRZ2 to maintain Fe homeostasis in rice.	J. Exp. Bot.	73(18)	6463-6474	2022		
52277	36340400	Siangliw J.L., Thunnom B., Natividad M.A., Quintana M.R., Chebotarov D., McNally K.L., Lynch J.P., Brown K.M., Henry A.	Response of Southeast Asian rice root architecture and anatomy phenotypes to drought stress.	Front Plant Sci	13	1008954	2022	BHLH127,GCC7,RHL1	OsbHLH127, bHLH127, OsRSL3, RSL3,HMA3, OsHMA3, OsHMA3a, OsHMA3n, osHMA3, OsHMP34, HMP34,OsbHLH115, bHLH115, OsRHL1
52278	36208371	Qiu Z., Chen D., Teng L., Guan P., Yu G., Zhang P., Song J., Zeng Q., Zhu L.	OsWHY1 Interacts with OsTRX z and is Essential for Early Chloroplast Development in Rice.	Rice (N Y)	15(1)	50	2022	RPS11,YGL10,RPOC1,RPOB,RPOC2,PSAA,WHY1,RBCL,PSBA,FGL,WP2,ELL,RPS14,RPS4,RPS18,YGL98,DVR,HEMA,_	rps11,CAO, OsCAO, CAO1, OsCAO1, Oslls1, Lls1, DVR, PGL,rpoC1, RPO beta', RPObeta', OsRPOC1,rpoB, RpoB, Rpobeta,rpoC2, RPO beta", RPObeta",PsaA, psaA, PsAA1, psaA1,OsWHY1,rbcL, rbcA, OsrbcL,PsbA, psbA, OsPsbA, PSBD1, OsPSBD1, psbD1,fgl(fl), fl, fgl, OsFGL, OsPorB, PoPA, PORA, porA, OsPORA, PORB, OsPORB,TRXZ, OsPAP10, PAP10, OsPAP10/OsTRXz, OsTRXz, TRXz, OsTrx25, Trx25,chlI, OsChlI, ChlI, CHLI, OsCHLI, OsCHLI/ELL, OsELL,rps14 ,rps4 ,rps18,OsChlD, ChlD, CHLD, OsCHLD, Ygl7, YGL3, OsvWA12, vWA12,OsDVR,HEMA1, OsHEMA, GluTR, OsHEMA1, hemA,RPS16, OsRPS16, rps16
52279	36258666	Cao R., Zhao S., Jiao G., Duan Y., Ma L., Dong N., Lu F., Zhu M., Shao G., Hu S., Sheng Z., Zhang J., Tang S., Wei X., Hu P.	OPAQUE3, encoding a transmembrane bZIP transcription factor, regulates endosperm storage protein and starch biosynthesis in rice.	Plant Commun	3(6)	100463	2022	GLB1,GLUA2,SAR1D,SBE1,WX1,BZIP50,ERO1,FES1C,BIP1,ISA2,PDIL1-1,CNX,PDIL2-3,O3,AGPL2	glb1(t)*, glb1(t), glb1, alpha-Glb, Glb-1, OsGlb1, Glb1, Glb, OsEnS-77,Glua2*, Glua2, GLUA-2, GluA-2, Glu20, GluA2, OsEnS-137,OsSAR1, SAR1, OsARL1c, ARL1c, OsSar1d, Sar1d,sbe1, Rbe1. Sbe1, sbe1*(QEI), RBE1, BEI, SBE I, QEI, OsBEI, BE1, OsSBE1, OsSBEI, SBEI,wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx,OsbZIP60, bZIP50, OsbZIP50, OsbZIP74, bZIP74, OsbZIP50-S,OsERO1, Ero1,NEF, OsFes1C, Fes1C,OsBiP1, BiP1, BiP, Bip3, OsBiP3, BIP1/OsBIP3, OsMed37_2, Med37_2 ,OsISA2, ISA II, OsISA II,OsPDIL1;1, PDIL1;1, PDIL 1-1, PDI, OsPDIL1-1, OsTrx28, Trx28,OsCNX, OsCNX1, CNX1,PDIL2;3, OsPDIL2;3, PDIL 2-3, OsPDIL2-3, OsTrx27, Trx27,OsbZIP60, bZIP60,OsAGPL2, osagpl2, APL2, OsAPL2, AGPiso, sh2, Sh2, GIF2, GAS1 
52280	36275605	Theerawitaya C., Wanchana S., Ruanjaichon V., Tisaram R., Samphumphuang T., Sotesaritkul T., Cha-Um S., Toojinda T.	Determination of traits responding to iron toxicity stress at different stages and genome-wide association analysis for iron toxicity tolerance in rice (<i>Oryza sativa</i> L.).	Front Plant Sci	13	994560	2022		
52281	36239908	Si F., Luo H., Yang C., Gong J., Yan B., Liu C., Song X., Cao X.	Mobile ARGONAUTE 1d binds 22-nt miRNAs to generate phasiRNAs important for low-temperature male fertility in rice.	Sci China Life Sci			2022	MIR2118P,MIR2118D,AGO1D,MIR2118A,MIR2275D	miR2118p, osa-miR2118p, osa-MIR2118p,miR2118d, osa-miR2118d, osa-MIR2118d,OsAGO1d, AGO1d,miR2118a, osa-miR2118a, osa-MIR2118a,miR2275d, osa-miR2275d, osa-MIR2275d
52282	36047836	Zhang J., Liu Z., Sakamoto S., Mitsuda N., Ren A., Persson S., Zhang D.	ETHYLENE RESPONSE FACTOR 34 promotes secondary cell wall thickening and strength of rice peduncles.	Plant Physiol.	190(3)	1806-1820	2022		
52283	35946132	Li G., Cui K., Hu Q., Wang W., Pan J., Zhang G., Shi Y., Nie L., Huang J., Peng S.	Phloem Unloading in Developing Rice Caryopses and its Contribution to Non-Structural Carbohydrate Translocation from Stems and grain yield Formation.	Plant Cell Physiol.	63(10)	1510-1525	2022		
52284	36308720	Bi Y., Wang H., Yuan X., Yan Y., Li D., Song F.	The NAC transcription factor ONAC083 negatively regulates rice immunity against Magnaporthe oryzae by directly activating transcription of the RING-H2 gene OsRFPH2-6.	J Integr Plant Biol			2022		
52285	36271862	Nishizawa-Yokoi A., Motoyama R., Tanaka T., Mori A., Iida K., Toki S.	SUPPRESSOR OF GAMMA RESPONSE 1 plays rice-specific roles in DNA damage response and repair.	Plant Physiol.			2022	NAC91,NAC50	ONAC091, ONAC91, OsSOG1, SOG1,ONAC050, ONAC50, OsSGL, SGL, OsNAC02, NAC02
52286	35788288	Kuramata M., Abe T., Tanikawa H., Sugimoto K., Ishikawa S.	A weak allele of OsNRAMP5 confers moderate cadmium uptake while avoiding manganese deficiency in rice.	J. Exp. Bot.	73(18)	6475-6489	2022		
52287	36365266	Syu C.H., Nieh T.I., Hsieh M.T., Lo Y.C., Du P.R., Lin Y.W., Wu D.H.	Uncovering the Genetic of Cadmium Accumulation in the Rice 3K Panel.	Plants (Basel)	11(21)		2022	NRAMP1,LCD,GCC7,LCD1	OsNramp1, OsNRAMP1, OsNramp6,OsLCD,HMA3, OsHMA3, OsHMA3a, OsHMA3n, osHMA3, OsHMP34, HMP34,NRAMP5, OsNRAMP5, OsNramp5, OsLCD1
52288	36279646	Niu X., Yamamoto N., Yang G., Lin H., Jiang L., Liu Y., Zheng A.	A small secreted protein, RsMf8HN, in Rhizoctonia solani triggers plant immune response, which interacts with rice OsHIPP28.	Microbiol. Res.	266	127219	2022		
52289	36252011	De la Concepcion JC., Fujisaki K., Bentham A.R., Cruz Mireles N., Sanchez de Medina Hernandez V., Shimizu M., Lawson D.M., Kamoun S., Terauchi R., Banfield M.J.	A blast fungus zinc-finger fold effector binds to a hydrophobic pocket in host Exo70 proteins to modulate immune recognition in rice.	Proc. Natl. Acad. Sci. U.S.A.	119(43)	e2210559119	2022	EXO70F2,EXO70F3	OsEXO70F2, OsExo70F2, OrysaF2_Exo70, OsExo70-F2, Exo70-F2,OsEXO70F3, OsExo70F3, OrysaF3_Exo70, OsExo70-F3, Exo70-F3
52290	36233067	Zhan J., Zou W., Li S., Tang J., Lu X., Meng L., Ye G.	OsNAC15 Regulates Tolerance to Zinc Deficiency and Cadmium by Binding to <i>OsZIP7</i> and <i>OsZIP10</i> in Rice.	Int J Mol Sci	23(19)		2022	ZIP6,ZIP1,ZIP8,ZIP10,IRT1,ZIP13,NAC15,ZIP16,ZIP4,ZIP5,ZIP11,ZIP14,_,ZIP3,ZIP7,IRT2,ZIP2	OsZIP6,OsZIP1,OsZIP8, OsZIP1, ZIP1, OsZIP13, ZIP13,OsZIP10,OsIRT1, ZIP10, OsZIP10, OsZIP12, ZIP12,OsZIP13, OsZIP8, ZIP8,OsNAC15, ONAC015, ONAC15, ONAC069, ONAC69,OsZIP16,OsZIP4,OsZIP5, OsZIP8, ZIP8, OsZIP9,OsZIP11,OsZIP14,OsZIP9, ZIP9,OsZIP3,OsZIP7,OsIRT2, OsIRT1, OsZIP15, ZIP15,OsZIP2, OsZIP11, ZIP11 
52291	36293407	Jiang Y., Liu X., Zhou M., Yang J., Ke S., Li Y.	Genome-Wide Identification of the AGC Protein Kinase Gene Family Related to Photosynthesis in Rice (<i>Oryza sativa</i>).	Int J Mol Sci	23(20)		2022	AGC20,AGC14,PDK1,AGC15,NPH1B,BIF2,AGC4,AGC5,AGC12,AGC6,S6K1,AGC21,NPH1A,AGC1,AGC24,AGC17,AGC13,AGC11,AGC8,AGC16,OXI1,AGC19,AGC26,AGC23,AGC2,AGC18	OsAGC20,OsAGC14,OsPdk1, Pdk1, OsAGC3, AGC3,OsAGC15,PHOT2, OsPHOT2, OsNPH1b, OsAGC9, AGC9,bif2, Osbif2, OsBIF2, OsPID, PID, OsAGC25, AGC25,OsAGC4,OsAGC5,OsAGC12,OsAGC6,OsS6K1, OsAGC7, AGC7,OsPIDL1, PIDL1, OsAGC21,OsNPH1a, OsAGC22, AGC22,OsPIDL, PIDL, OsAGC1,OsAGC24,OsAGC17,G11A, OsAGC13,OsAGC11,OsAGC8,OsAGC16,OsOxi1, OsAGC10, AGC10,OsAGC19,OsSTA290, OsAGC26,OsAGC23,OsAGC2,OsAGC18
52292	36263719	Zhang P., Zhu W., He Y., Fan J., Shi J., Fu R., Hu J., Li L., Zhang D., Liang W.	THERMO-SENSITIVE BARREN PANICLE (TAP) is required for rice panicle and spikelet development at high ambient temperature.	New Phytol.			2022	YAB4,YAB3,YAB5,TAP	OsYAB4, OsYAB7, TOB2, ,OsYAB3, OsYAB4, TOB3,OsYABBY5, OsYAB3, YAB3, Os YABBY5, TOB1, OsTPB1,OsTAP, FRS, OsFRS
52293	36199247	Alfatih A., Zhang J., Song Y., Jan S.U., Zhang Z.S., Xia J.Q., Zhang Z.Y., Nazish T., Wu J., Zhao P.X., Xiang C.B.	Nitrate-responsive OsMADS27 promotes salt tolerance in rice.	Plant Commun		100458	2022	ERF1,SPL7,MADS27,NAR2.1,RAB16A,CAM1-1,KAT3,HKT4,O3L2,NRT2.4,RR2,HKT3,MPS	Os06ERF, OsWR2, WR2, OsERF#001, OsERF001, OsERF1, AP2/EREBP#057, AP2/EREBP57, RD1, OsSHN, SHN,spl7, HSFA4D, HSF10, HSF15, OsHSF15, SP17, OsHsf-15, rHsf10, OsHsfA4d, HSfA4d, lrd13, HSF1,OsMADS27, MADS-27a, OsSTA66, OsMADS27a,OsNAR2.1, OsNRT3.1A,Rab16A, rab21, RAB21, OsRab21, OsRAB21, OsRAB-21, OsRab16A, OsLEA29, rab16A, OsRAB16A,OsCaM1, OsCam1-1, OsCaM1-1, CAM3, Cam1-1, OsCAM1.1, CAM1.1,OsKAT3, OsKAT1, KAT1,OsHKT4, OsHKT1;1, HKT1;1, OsHKT2, RNC4, OsHKT1;1-FL, OsHKT1;1-V1, OsHKT1;1-V2, OsHKT1;1-V3, OsHKT1;1-V4, OsHKT1;1-V5, OsHKT1;1-V6, OsHKT1;1-V7, OsHKT1;1-V8,OsO3L2,OsNRT2.4,rr2, Osrr2, OsRR2, Rra10, OsRRA10,OsHKT3, OsHKT2;3, HKT2;3,OsMPS, Os2R_MYB25, 2R_MYB25
52294	36134434	To H.T.M., Pham D.T., Le Thi VA., Nguyen T.T., Tran T.A., Ta A.S., Chu H.H., Do P.T.	The Germin-like protein OsGER4 is involved in promoting crown root development under exogenous jasmonic acid treatment in rice.	Plant J.	112(3)	860-874	2022		
52295	36304400	Chandran A.K.N., Sandhu J., Irvin L., Paul P., Dhatt B.K., Hussain W., Gao T., Staswick P., Yu H., Morota G., Walia H.	Rice <i>Chalky Grain 5</i> regulates natural variation for grain quality under heat stress.	Front Plant Sci	13	1026472	2022	CG5	OsCG5
52296	36222916	Jin X., Tsago Y., Lu Y., Sunusi M., Khan A.U.	Map-based cloning and transcriptome analysis of the more-tiller and small-grain mutant in rice.	Planta	256(5)	98	2022		
52297	36219248	Lee K., Kim J.H., Park O.S., Jung Y.J., Seo P.J.	Ectopic expression of WOX5 promotes cytokinin signaling and de novo shoot regeneration.	Plant Cell Rep.			2022		
52298	36293306	Gao C., Lu S., Zhou R., Wang Z., Li Y., Fang H., Wang B., Chen M., Cao Y.	The OsCBL8-OsCIPK17 Module Regulates Seedling Growth and Confers Resistance to Heat and Drought in Rice.	Int J Mol Sci	23(20)		2022	CBL8,ONAC300,CBL2,PP2C77,CIPK17,SH11	OsCBL8,ONAC077, NAC77, OsNAC77, NAC300, OsNAC300, ONAC132, NAC132, OsNAC132, DLN250, OsDLN250,OsCBL2,OsPP2C77, OsPP129, PP129,OsCIPK17, OsSnRK3.14, SnRK3.14,OsJAmyb, JAmyb, OsJAMyb, OsMYB21, MYB21, Os2R_MYB91, 2R_MYB91, OgSH11, OsSH11
52299	36222582	Ablazov A., Votta C., Fiorilli V., Wang J.Y., Aljedaani F., Jamil M., Balakrishna A., Balestrini R., Liew K.X., Rajan C., Berqdar L., Blilou I., Lanfranco L., Al-Babili S.	ZAXINONE SYNTHASE 2 regulates growth and arbuscular mycorrhizal symbiosis in rice.	Plant Physiol.			2022	ZAS-L2,ZAS,SLB1,ZAS-L3,D17,D10,CCD8D,D27	OsZAS-L2, OsZAS1c, ZAS1c, OsCCD8d, CCD8d ,OsZAS, OsCCD8e, CCD8e ,OsSLB1, Os900/CYP711A2, Os900, CYP711A2, OsCYP711A2, OsCO, CO,OsZAS-L3, OsZAS2, ZAS2,d17(t), dwf14, d17, htd1, OsCCD7, CCD7, D17/HTD1, HTD1, OsHTD1, OsD17,d10(d15,d16), d16, d15, dwf9, d10, OsCCD8b, OsCCD8, CCD8, OsD10,OsCCD8d, ZAS-L1, OsZAS-L1, OsZAS1b, ZAS1b, OsCCD8c, CCD8c ,d27(d t), dt, dwf23, d27, OsD27
52300	36233270	Liang D., Yu J., Song T., Zhang R., Du Y., Yu M., Cao H., Pan X., Qiao J., Liu Y., Qi Z., Liu Y.	Genome-Wide Prediction and Analysis of <i>Oryza</i> Species <i>NRP</i> Genes in Rice Blast Resistance.	Int J Mol Sci	23(19)		2022	NRP4,BZIP50,NRP1,NRP8,RLCK205,KEAP1,NRP6,NRP12,DTC1,NRP7,NRP11,NRP3,NRP5	OsNRP4,OsbZIP60, bZIP50, OsbZIP50, OsbZIP74, bZIP74, OsbZIP50-S,OsNRP1,OsNRP8,OsRLCK205, OsNRP9, NRP9,OsKEAP1, OsNRP2, NRP2,OsNRP6,OsNRP12,OsDTC1, OsNRP10, NRP10,OsNRP7,OsNRP11,OsNRP3,OsNRP5
52301	36251035	Singh S., Sharma P., Mishra S., Khurana P., Khurana J.P.	CRY2 gene of rice (Oryza sativa subsp. indica) encodes a blue light sensory receptor involved in regulating flowering, plant height and partial photomorphogenesis in dark.	Plant Cell Rep.			2022		
52302	36181413	Narushima J., Kimata S., Shiwa Y., Gondo T., Akimoto S., Soga K., Yoshiba S., Nakamura K., Shibata N., Kondo K.	Unbiased prediction of off-target sites in genome-edited rice using SITE-Seq analysis on a web-based platform.	Genes Cells			2022		
52303	36270512	Chen X., Ji Y., Zhao W., Niu H., Yang X., Jiang X., Zhang Y., Lei J., Yang H., Chen R., Gu C., Xu H., Dong H., Duan E., Teng X., Wang Y., Zhang Y., Zhang W., Wang Y., Wan J.	Fructose-6-phosphate-2-kinase/Fructose-2,6-bisphosphatase regulates energy metabolism and synthesis of storage products in developing rice endosperm.	Plant Sci.	326	111503	2022		
52304	36361995	Li J., Khatab A.A., Hu L., Zhao L., Yang J., Wang L., Xie G.	Genome-Wide Association Mapping Identifies New Candidate Genes for Cold Stress and Chilling Acclimation at Seedling Stage in Rice (<i>Oryza sativa</i> L.).	Int J Mol Sci	23(21)		2022	MYB3R2,RING109	OsMYB3R-2, OsMYB3R2, OsMSL07, MSL07, MSL7, DLN28, OsDLN28,OsRING109
52305	36271865	Somashekar H., Mimura M., Tsuda K., Nonomura K.I.	Rice GLUCAN SYNTHASE-LIKE5 promotes anther callose deposition to maintain meiosis initiation and progression.	Plant Physiol.			2022	SPL,UGP1,PAIR2,ZEP1,DLC1,PAIR3,AM1,G1,RAD21-4,GSL5,MEL1	OsSPL,Ugp1, OsUgp1, UGP2, UGP3,Pair2, OsPAIR2, OsASY1,OsZEP1,RR24, OsRR24, Rrb2, Orr4, OsRR17, RR17, OsRRB2, OsRR24/LEPTO1, OsLEPTO1, LEPTO1, OsDLC1,,OsAM1, SWI1, Osam1,Osg1, g1,OsRad21-4, REC8, OsREC8, OsRAD21-4,OsGSL5, OsSTA170, CalS5, OsCalS5,mel1, OsMEL1, MEAL1, OsMEAL1, OsAGO5c 
52306	36283578	Zhang T., Wang J., Luo R., Man J., Long Q., Xu N.	OsHLS1 regulates plant height and development by controlling active gibberellin accumulation in rice (Oryza sativa L.).	Plant Sci.	326	111508	2022		
52307	36283483	Khan S., Mitra N., Dey S.	A CobB like sirtuin in Oryza sativa indica regulates the mitochondrial machinery under stress conditions.	Arch. Biochem. Biophys.	731	109446	2022		
52308	36235478	Cui X., He H., Hu S., Zhang B., Cai H.	Synergistic Interaction between Copper and Nitrogen-Uptake, Translocation, and Distribution in Rice Plant.	Plants (Basel)	11(19)		2022	GLN1;2,NRT2.4,YSL16,NRT2.1,GS2,AMT3;1,AMT1;3,NPF6.5,HTNE,GLT2,HMA5	OsGLN1;2, GSr, RGS8, OsGS1;2, GS1;2, GS1, OsGS1-2, GS1-2, OsGS1.2, GS1.2,OsNRT2.4,OsYSL16, Os-YSL16, OsYs14 ,OsNRT2.1, OsNRT2.2,OsGS2, GLN2, OsGLN2, RGS31, OsRGS31,OsAMT3;1, AMT3-1, OsAMT3.1, OsAMT2;2,OsAMT1;3, AMT1-3, Osamt1-2, "OsAMT1,2", OsAMT1;2, OsAMT1.3, AMT1.2,OsNRT1.1B, NRT1.1B, OsNPF6.5,NRT2.3, OsNRT2.3, OsNRT2;1, OsNRT2.3a, OsNRT2.3b, OsNRT2;3a, OsNRT2.5 ,OsGLT2, OsNADH-GOGAT2, NADH-GOGAT2, OsGOGAT2, GOGAT2, OsGLU2, GLU2,OsHMA8, osHMA5, HMA8, OsHMP27, HMP27
52309	36315339	Kobayashi T., Maeda K., Suzuki Y., Nishizawa N.K.	Simultaneous Enhancement of iron Deficiency Tolerance and Iron Accumulation in Rice by Combining the Knockdown of OsHRZ Ubiquitin Ligases with the Introduction of Engineered Ferric-chelate Reductase.	Rice (N Y)	15(1)	54	2022	NAS1,IRT1,HRZ2,TOM1,YSL2	OsNAS1,OsIRT1, ZIP10, OsZIP10, OsZIP12, ZIP12,OsRFPH2-24, OsHRZ2, OsRING150, RING150, CLG1, OsCLG1,OsTOM1, ZIFL4, OsZIFL4 ,OsYSL2, Os-YSL2, OsYs6 
52310	36243857	Li J., Xin W., Wang W., Zhao S., Xu L., Jiang X., Duan Y., Zheng H., Yang L., Liu H., Jia Y., Zou D., Wang J.	Mapping of Candidate Genes in Response to Low Nitrogen in Rice Seedlings.	Rice (N Y)	15(1)	51	2022		
52311	36240213	Liu H., Cui P., Zhang B., Zhu J., Liu C., Li Q.	Binding of the transcription factor MYC2-like to the ABRE of the OsCYP2 promoter enhances salt tolerance in Oryza sativa.	PLoS ONE	17(10)	e0276075	2022	BHLH9,LRT2	OsbHLH009, bHLH009, OsMYC2, MYC2,CYC2, cyc2*, cyc2, OsCYP2, Cyp2, OsCYP19-2, CYP19-2, OsCYP-2, OsCyp2-P, OsCyp2, OsCYP19-1, LRT2/OsCYP2, lrt2*, lrt2, Ppcti 
52312	36328178	Tanaka J., Takashima T., Abe N., Fukamizo T., Numata T., Ohnuma T.	Characterization of two rice GH18 chitinases belonging to family 8 of plant pathogenesis-related proteins.	Plant Sci.	326	111524	2022		
52313	36104379	Araki S., Tamotsu H., Komiya R.	3D multiple immunoimaging using whole male organs in rice.	Sci Rep	12(1)	15426	2022		
52314	36148792	Wu C.C., Hsieh K.T., Yeh S.Y., Lu Y.T., Chen L.J., Ku M.S.B., Li W.H.	Simultaneous detection of miRNA and mRNA at the single-cell level in plant tissues.	Plant Biotechnol. J.			2022		
52315	36247537	Qiao J., Zhang Y., Han S., Chang S., Gao Z., Qi Y., Qian Q.	<i>OsARF4</i> regulates leaf inclination <i>via</i> auxin and brassinosteroid pathways in rice.	Front Plant Sci	13	979033	2022		
52316	36142440	Qiu S., Fang A., Zheng X., Wang S., Wang J., Fan J., Sun Z., Gao H., Yang J., Zeng Q., Cui F., Wang W.M., Chen J., Sun W.	<i>Ustilaginoidea virens</i> Nuclear Effector SCRE4 Suppresses Rice Immunity via Inhibiting Expression of a Positive Immune Regulator OsARF17.	Int J Mol Sci	23(18)		2022		
52317	36039706	Lu C., Jin D., Zhang L., Lu G., Ji Y., Zhou Y., Wang Y., Li S.	A rice plant expressing viral glycoprotein NSvc2-NS reduces the transmission of rice stripe virus by the small brown planthopper.	Pest Manag. Sci.	78(12)	5325-5333	2022		
52318	36101507	Feng Q., Wang H., Yang X.M., Hu Z.W., Zhou X.H., Xiang L., Xiong X.Y., He X.R., Zhu Y., Li G.B., Zhao J.H., Ji Y.P., Hu X.H., Pu M., Zhou S.X., Zhao Z.X., Zhang J.W., Huang Y.Y., Fan J., Wang W.M., Li Y.	Osa-miR160a confers broad-spectrum resistance to fungal and bacterial pathogens in rice.	New Phytol.	236(6)	2216-2232	2022		
52319	36202058	Das D., Ullah H., Himanshu S.K., Tisarum R., Cha-Um S., Datta A.	Arbuscular mycorrhizal fungi inoculation and phosphorus application improve growth, physiological traits, and grain yield of rice under alternate wetting and drying irrigation.	J. Plant Physiol.	278	153829	2022		
52320	36226281	Liu X., Yin Z., Wang Y., Cao S., Yao W., Liu J., Lu X., Wang F., Zhang G., Xiao Y., Tang W., Deng H.	Rice cellulose synthase-like protein OsCSLD4 coordinates the trade-off between plant growth and defense.	Front Plant Sci	13	980424	2022		
52321	36056768	Gao H., Zou J., Lin X., Zhang H., Yu N., Liu Z.	Nilaparvata lugens salivary protein NlG14 triggered defense response in plants.	J. Exp. Bot.			2022		
52322	36003026	Bashir K., Todaka D., Rasheed S., Matsui A., Ahmad Z., Sako K., Utsumi Y., Vu A.T., Tanaka M., Takahashi S., Ishida J., Tsuboi Y., Watanabe S., Kanno Y., Ando E., Shin K.C., Seito M., Motegi H., Sato M., Li R., Kikuchi S., Fujita M., Kusano M., Kobayashi M., Habu Y., Nagano A.J., Kawaura K., Kikuchi J., Saito K., Hirai M.Y., Seo M., Shinozaki K., Kinoshita T., Seki M.	Ethanol-Mediated Novel Survival Strategy against Drought Stress in Plants.	Plant Cell Physiol.	63(9)	1181-1192	2022		
52323	36119573	Ma Y., Wang J., Yang T., Dong J., Yang W., Chen L., Zhou L., Chen J., Liu B., Zhang S., Edwards D., Zhao J.	Genome-wide association mapping and gene expression analysis identify <i>OsCPS1</i> as a new candidate gene controlling early seedling length in rice.	Front Plant Sci	13	976669	2022	CPS1	OsCPS1, OsCPS1ent, OsCPS, Os CPS1, OsTPS4, TPS4, TPS29, OsTPS29, OsCPS1-L, OsCPS1-S
52324	36176686	Ye Y., Wang S., Ren Y., Yang H., Guo J., Jiang H., Zhu X., Li W., Tao L., Zhan Y., Wu Y., Fu X., Wu K., Liu B.	Low grain weight, a new allele of BRITTLE CULM12, affects grain size.through regulating <i>GW7</i> expression in rice.	Front Plant Sci	13	997624	2022	GW7,BC12	GL7, OsGL7, OsGW7, qGW7, qGL7, SLG7, GL7/GW7/SLG7, qPY7, GL7/SLG7, Chalk7, OsChalk7,bc12, gdd, GDD1, BC12/GDD1, OsGDD1, OsBC12/GDD1, OsBC12, LGW, OsLGW
52325	36212385	Liu X., Jiang H., Yang J., Han J., Jin M., Zhang H., Chen L., Chen S., Teng S.	Comprehensive QTL analyses of nitrogen use efficiency in <i>indica</i> rice.	Front Plant Sci	13	992225	2022		
52326	36179092	Zhai L., Yan A., Shao K., Wang S., Wang Y., Chen Z.H., Xu J.	Large Vascular Bundle Phloem Area 4 Enhances grain yield and Quality in Rice via Source-Sink-Flow.	Plant Physiol.			2022		
52327	36160968	Huang Z.H., Bao K., Jing Z.H., Wang Q., Duan H.F., Zhang S., Tao W.W., Wu Q.N.	Euryale <i>Small Auxin Up RNA62</i> promotes cell elongation and seed size by altering the distribution of indole-3-acetic acid under the light.	Front Plant Sci	13	931063	2022	PIN9	OsPIN9
52328	36119631	Monden Y., Tanaka H., Funakoshi R., Sunayama S., Yabe K., Kimoto E., Matsumiya K., Yoshikawa T.	Comprehensive survey of transposon <i>mPing</i> insertion sites and transcriptome analysis for identifying candidate genes controlling high protein content of rice.	Front Plant Sci	13	969582	2022		
52329	36127877	Liu D., Zhang X., Li Q., Xiao Y., Zhang G., Yin W., Niu M., Meng W., Dong N., Liu J., Yang Y., Xie Q., Chu C., Tong H.	The U-box ubiquitin ligase TUD1 promotes brassinosteroid-induced GSK2 degradation in rice.	Plant Commun		100450	2022		
52330	36149320	Afifi O.A., Tobimatsu Y., Lam P.Y., Martin A.F., Miyamoto T., Osakabe Y., Osakabe K., Umezawa T.	Genome-edited rice deficient in two 4-COUMARATE:coenzyme A ligase genes displays diverse lignin alterations.	Plant Physiol.			2022		
52331	36142438	Yang J., Guo X., Wang X., Fang Y., Liu F., Qin B., Li R.	Development of Soft Rice Lines by Regulating amylose content via Editing the 5'UTR of the <i>Wx</i> Gene.	Int J Mol Sci	23(18)		2022		
52332	36111882	Matsunami M., Murai-Hatano M., Kuwagata T., Matsushima U., Hashida Y., Tominaga Y., Masuya Y., Nagano A.J.	Transcriptome dynamics of rice in natura: Response of above and below ground organs to microclimate.	Plant Cell Environ.			2022		
52333	36187783	Li C., Xiong Z., Fang C., Liu K.	Transcriptome and metabolome analyses reveal the responses of brown planthoppers to RH resistant rice cultivar.	Front Physiol	13	1018470	2022		
52334	35781740	You X., Zhang F., Liu Z., Wang M., Xu X., He F., Wang D., Wang R., Wang Y., Wang G., Chu C., Wang G.L., Ning Y.	Rice catalase OsCATC is degraded by E3 ligase APIP6 to negatively regulate immunity.	Plant Physiol.	190(2)	1095-1099	2022		
52335	35861434	Chen X., Li X., Duan Y., Pei Z., Liu H., Yin W., Huang J., Luo C., Chen X., Li G., Xie K., Hsiang T., Zheng L.	A secreted fungal subtilase interferes with rice immunity via degradation of SUPPRESSOR OF G2 ALLELE OF skp1.	Plant Physiol.	190(2)	1474-1489	2022		
52336	36142250	Chen G., Han H., Yang X., Du R., Wang X.	salt tolerance of Rice Is Enhanced by the <i>SS3</i> Gene, Which Regulates Ascorbic Acid Synthesis and ROS Scavenging.	Int J Mol Sci	23(18)		2022		
52337	36096623	Li Y., Huang Y.Z., Bao Q.L., Huang Y.C., Zhang S.N.	[Effects of Exogenous Jasmonic Acid on Arsenic Accumulation and Response to Stress in Roots of Rice Seedlings].	Huan Jing Ke Xue	43(9)	4831-4838	2022		
52338	36182828	Thongnok S., Siripornadulsil W., Siripornadulsil S.	Responses to arsenic stress of rice varieties coinoculated with the heavy metal-resistant and rice growth-promoting bacteria Pseudomonas stutzeri and Cupriavidus taiwanensis.	Plant Physiol. Biochem.	191	42-54	2022		
52339	36131552	Khepar V., Sidhu A., Sharma A.B.	Nanomaterized zinc sulfide-meerschaum biomatrix efficiently suppressed Fusarium verticilloides with augmented rice seed quality benefits during storage.	Pest Manag. Sci.			2022		
52340	36067138	Islam T., Reddy M.K.	Evaluation of Cd2+ stress tolerance in transgenic rice overexpressing PgGPx gene that maintains cellular ion and reactive oxygen species homeostasis.	PLoS ONE	17(9)	e0273974	2022		
52341	36178632	Xiao G., Wang W., Liu M., Li Y., Liu J., Franceschetti M., Yi Z., Zhu X., Zhang Z., Lu G., Banfield M.J., Wu J., Zhou B.	The Piks allele of the NLR immune receptor Pik breaks the recognition of AvrPik effectors of the rice blast fungus.	J Integr Plant Biol			2022		
52342	36212327	Sah S.K., Jumaa S., Li J., Reddy K.R.	Proteomic analysis response of rice (<i>Oryza sativa</i>) leaves to ultraviolet-B radiation stress.	Front Plant Sci	13	871331	2022	_,GER5,GDCH,_,TPI,GLYI8,CPN60ALPHA1,USP12,GAPC2,_,CSP1,TSJT1	,OsGLP1, GLP1, GER1, GLP110, OsGER1, OsGER5, OsGLP8-14, GLP8-14, OsCDP8.14, CDP8.14,OsGDCH,DIP3, XIP, OsHI-XIP, OsXIP2, XIP2,tpi*, tips, TI, OsTPI1, TPI1, OsTPI1.1, OsTPI1.2 ,OsGLYI8, OsGLYI-8, GLYI-8,OsCPn60alpha1, OsCPn60a1, CPn60a1,OsUSP12,GAPDH, OsGAPDH, OsGapC2,,OsCSP1,OsTSJT1
52343	36142833	Wu C., Cui K., Fahad S.	Heat Stress Decreases Rice grain weight: Evidence and Physiological Mechanisms of Heat Effects Prior to Flowering.	Int J Mol Sci	23(18)		2022		
52344	36142691	Crofts N., Hareyama K., Miura S., Hosaka Y., Oitome N.F., Fujita N.	Effect of heading date on the Starch Structure and grain yield of Rice Lines with Low gelatinization temperature.	Int J Mol Sci	23(18)		2022		
52345	36286016	Xiang J., Zhang C., Wang N., Liang Z., Zhenzhen Z., Liang L., Yuan H., Shi Y.	Genome-Wide Association Study Reveals Candidate Genes for Root-Related Traits in Rice.	Curr Issues Mol Biol	44(10)	4386-4405	2022		
52346	36175427	Sun J., Zhang G., Cui Z., Kong X., Yu X., Gui R., Han Y., Li Z., Lang H., Hua Y., Zhang X., Xu Q., Tang L., Xu Z., Ma D., Chen W.	Regain flood adaptation in rice through a 14-3-3 protein OsGF14h.	Nat Commun	13(1)	5664	2022		
52347	36126900	Abou El-Ela AS., Ntiri E.S., Munawar A., Shi X.X., Zhang C., Pilianto J., Zhang Y., Chen M., Zhou W., Zhu Z.R.	Silver and copper-oxide nanoparticles prepared with GA3 induced defense in rice plants and caused mortalities to the brown planthopper, Nilaparvata lugens (St?l).	NanoImpact	28	100428	2022		
52348	36145787	Sahu P.K., Sao R., Choudhary D.K., Thada A., Kumar V., Mondal S., Das B.K., Jankuloski L., Sharma D.	Advancement in the Breeding, Biotechnological and Genomic Tools towards Development of Durable Genetic Resistance against the Rice blast disease.	Plants (Basel)	11(18)		2022		
52349	36232678	Mondal S., Septiningsih E.M., Singh R.K., Thomson M.J.	Mapping QTLs for Reproductive Stage Salinity Tolerance in Rice Using a Cross between Hasawi and BRRI dhan28.	Int J Mol Sci	23(19)		2022		
52350	36235318	Yen K.S., Sundar L.S., Chao Y.Y.	Foliar Application of <i>Rhodopseudomonas palustris</i> Enhances the Rice Crop Growth and Yield under Field Conditions.	Plants (Basel)	11(19)		2022		
52351	36142652	Li Z., Khan M.U., Letuma P., Xie Y., Zhan W., Wang W., Jiang Y., Lin W., Zhang Z.	Transcriptome Analysis of the Responses of Rice Leaves to Chilling and Subsequent Recovery.	Int J Mol Sci	23(18)		2022		
52352	36176065	Singh G., Kaur N., Khanna R., Kaur R., Gudi S., Kaur R., Sidhu N., Vikal Y., Mangat G.S.	2Gs and plant architecture: breaking grain yield ceiling through breeding approaches for next wave of revolution in rice (<i>Oryza sativa</i> L.).	Crit. Rev. Biotechnol.		1-24	2022		
52353	36186893		Corrigendum to "PALE-GREEN LEAF 1, a rice cpSRP54 protein, is essential for the assembly of the PSI-LHCI supercomplex".	Plant Direct	6(9)	e451	2022		
52354	36058302	Chen Z., Du H., Tao Y., Xu Y., Wang F., Li B., Zhu Q.H., Niu H., Yang J.	Efficient breeding of low glutelin content rice germplasm by simultaneous editing multiple glutelin genes via CRISPR/Cas9.	Plant Sci.	324	111449	2022		
52355	36232457	Wang X., Fu J., Min Z., Zou D., Liu H., Wang J., Zheng H., Jia Y., Yang L., Xin W., Sun B., Zhao H.	Response of Rice with Overlapping Growth Stages to Water Stress by Assimilates Accumulation and Transport and Starch Synthesis of Superior and Inferior Grains.	Int J Mol Sci	23(19)		2022		
52356	36064309	Sun L., Li J., Liu Y., Noman A., Chen L., Liu J.	Transcriptome profiling in rice reveals a positive role for OsNCED3 in defense against the brown planthopper, Nilaparvata lugens.	BMC Genomics	23(1)	634	2022		
52357	36152118	Chen G.E., Wang J.Y., Jamil M., Braguy J., Al-Babili S.	9-cis-beta-Apo-10'-carotenal is the precursor of strigolactones in planta.	Planta	256(5)	88	2022		
52358	36079705	Guo Z., Yao J., Cheng Y., Zhang W., Xu Z., Li M., Huang J., Ma D., Zhao M.	Identification of QTL under Brassinosteroid-Combined Cold Treatment at Seedling Stage in Rice Using Genotyping-by-Sequencing (GBS).	Plants (Basel)	11(17)		2022		
52359	36076028	Wedger M.J., Roma-Burgos N., Olsen K.M.	Genomic revolution of US weedy rice in response to 21st century agricultural technologies.	Commun Biol	5(1)	885	2022		
52360	36084528	Vennapusa A.R., Agarwal S., Rao Hm H., Aarthy T., Babitha K.C., Thulasiram H.V., Kulkarni M.J., Melmaiee K., Sudhakar C., Udayakumar M., S Vemanna R.	Stacking herbicide detoxification and resistant genes improves glyphosate tolerance and reduces phytotoxicity in tobacco (Nicotiana tabacum L.) and rice (Oryza sativa L.).	Plant Physiol. Biochem.	189	126-138	2022		
52361	36186007	Zhou L., Zong Y., Li L., Wu S., Duan M., Lu R., Liu C., Chen Z.	Integrated analysis of transcriptome and metabolome reveals molecular mechanisms of salt tolerance in seedlings of upland rice landrace 17SM-19.	Front Plant Sci	13	961445	2022		
52362	36142619	Ying Y., Xu F., Zhang Z., Tappiban P., Bao J.	Dynamic Change in Starch Biosynthetic Enzymes Complexes during Grain-Filling Stages in BEIIb Active and Deficient Rice.	Int J Mol Sci	23(18)		2022		
52363	36195035	Pappas D., Giannoutsou E., Panteris E., Gkelis S., Adamakis I.S.	microcystin-LR and cyanobacterial extracts alter the distribution of cell wall matrix components in rice root cells.	Plant Physiol. Biochem.	191	78-88	2022		
52364	36068333	Gu H., Zhang K., Chen J., Gull S., Chen C., Hou Y., Li X., Miao J., Zhou Y., Liang G.	OsFTL4, an FT-like Gene, Regulates Flowering Time and drought tolerance in Rice (Oryza sativa L.).	Rice (N Y)	15(1)	47	2022		
52365	36175401	Yoshida H., Hirano K., Yano K., Wang F., Mori M., Kawamura M., Koketsu E., Hattori M., Ordonio R.L., Huang P., Yamamoto E., Matsuoka M.	Genome-wide association study identifies a gene responsible for temperature-dependent rice germination.	Nat Commun	13(1)	5665	2022	MFT2,GF14H,ABI5,EM	OsMFT2, OsMFT,GF14h, OsGF14h, 14-3-3h,OsABI5, OsbZIP10, OsABF1, OREB1, OsABI5-1, OsABI5-2, OsOREB1, OREB1 ,Em*, EMP1, Emp1, EM, Em, OsEm, Osem, OsLEA21, OsEm1, Em1 
52366	36121304	Liu H.B., Li X., Cai J., Jiang L.L., Zhang X., Wu D., Wang L., Yang A., Guo C., Chen J., Pu W., Yu F.	A screening of inhibitors targeting the receptor kinase FERONIA reveals small molecules that enhance plant root immunity.	Plant Biotechnol. J.			2022		
52367	36147495	Xie P., Liu J., Lu R., Zhang Y., Sun X.	Molecular evolution of the <i>Pi-d2</i> gene conferring resistance to rice blast in <i>Oryza</i>.	Front Genet	13	991900	2022		
52368	36145737	Hasan M.J., Kulsum M.U., Sarker U., Matin M.Q.I., Shahin N.H., Kabir M.S., Ercisli S., Marc R.A.	Assessment of GGE, AMMI, Regression, and Its Deviation Model to Identify Stable Rice Hybrids in Bangladesh.	Plants (Basel)	11(18)		2022		
52369	36171886	Angira B., Cerioli T., Famoso A.N.	Discovery and Validation of grain shape Loci in U.S. Rice Germplasm Through Haplotype Characterization.	Front Genet	13	923078	2022		
52370	36145733	Kakar N., Jumaa S.H., Sah S.K., Redo?a ED., Warburton M.L., Reddy K.R.	Genetic Variability Assessment of Tropical Indica Rice (<i>Oryza sativa</i> L.) Seedlings for Drought Stress Tolerance.	Plants (Basel)	11(18)		2022		
52371	36139866	Mo X., Qian J., Liu P., Zeng H., Chen G., Wang Y.	Exogenous Betaine Enhances the Protrusion Vigor of Rice Seeds under Heat Stress by Regulating Plant Hormone Signal Transduction and Its Interaction Network.	Antioxidants (Basel)	11(9)		2022		
52372	36208600	Thanwisai L., Kim Tran HT., Siripornadulsil W., Siripornadulsil S.	A cadmium-tolerant endophytic bacterium reduces oxidative stress and Cd uptake in KDML105 rice seedlings by inducing glutathione reductase-related activity and increasing the proline content.	Plant Physiol. Biochem.	192	72-86	2022		
52373	36145730	Wang D., Xiao Y., Chen H., Huang C., Chen P., Chen D., Deng W., Wang J.	Combination of Genomics, Transcriptomics Identifies Candidate Loci Related to cold tolerance in Dongxiang Wild Rice.	Plants (Basel)	11(18)		2022		
52374	36160959	Yang S., Liu M., Chu N., Chen G., Wang P., Mo J., Guo H., Xu J., Zhou H.	Combined transcriptome and metabolome reveal glutathione metabolism plays a critical role in resistance to salinity in rice landraces HD961.	Front Plant Sci	13	952595	2022		
52375	36068348	Li H., You C., Yoshikawa M., Yang X., Gu H., Li C., Cui J., Chen X., Ye N., Zhang J., Wang G.	A spontaneous thermo-sensitive female sterility mutation in rice enables fully mechanized hybrid breeding.	Cell Res.	32(10)	931-945	2022		
52376	36169786	Nurrahma A.H.I., Yabuta S., Junaedi A., Sakagami J.I.	Different survival strategies involve carbon translocation rather than de novo C assimilation under complete submergence in rice plant.	Photosyn. Res.	154(2)	183-193	2022		
52377	36079670	Sohail A., Shah L., Liu L., Islam A., Yang Z., Yang Q., Anis G.B., Xu P., Khan R.M., Li J., Shen X., Cheng S., Cao L., Zhang Y., Wu W.	Mapping and Validation of <i>qHD7b:</i> Major Heading-Date QTL Functions Mainly under Long-Day Conditions.	Plants (Basel)	11(17)		2022		
52378	36173975	Takeda T., Takahashi M., Shimizu M., Sugihara Y., Yamashita T., Saitoh H., Fujisaki K., Ishikawa K., Utsushi H., Kanzaki E., Sakamoto Y., Abe A., Terauchi R.	Rice apoplastic CBM1-interacting protein counters blast pathogen invasion by binding conserved carbohydrate binding module 1 motif of fungal proteins.	PLoS Pathog.	18(9)	e1010792	2022	RMC,CBMIP-K	OsRMC, OsRLK, OsDUF26, DUF26, OsCBMIP, CBMIP, NCS, OsNCS, OsCRK5, CRK5,AGP, OsAGP, OsCBMIP-K
52379	36101511	Jiang Y., Chai Y., Qiao D., Wang J., Xin C., Sun W., Cao Z., Zhang Y., Zhou Y., Wang X.C., Chen Q.J.	Optimized prime editing efficiently generates glyphosate-resistant rice plants carrying homozygous TAP-IVS mutation in EPSPS.	Mol Plant	15(11)	1646-1649	2022		
52380	36068953	Yang J., Zhang N., Wang J., Fang A., Fan J., Li D., Li Y., Wang S., Cui F., Yu J., Liu Y., Wang W.M., Peng Y.L., He S.Y., Sun W.	SnRK1A-mediated phosphorylation of a cytosolic ATPase positively regulates rice innate immunity and is inhibited by Ustilaginoidea virens effector SCRE1.	New Phytol.	236(4)	1422-1440	2022		
52381	36050368	He N., Huang F., Yu M., Zhu Y., Li Q.Q., Yang D.	Analysis of a rice blast resistance gene Pita-Fuhui2663 and development of selection marker.	Sci Rep	12(1)	14917	2022		
52382	36103054	Khatab A.A., Li J., Hu L., Yang J., Fan C., Wang L., Xie G.	Global identification of quantitative trait loci and candidate genes for cold stress and chilling acclimation in rice through GWAS and RNA-seq.	Planta	256(4)	82	2022		
52383	36100693	Li X., Lin F., Li C., Du L., Liu Z., Shi W., Lv J., Cao X., Lan Y., Fan Y., Zhou Y., Zhou T.	Golden 2-like transcription factor contributes to the major QTL against rice black-streaked dwarf virus disease.	Theor. Appl. Genet.			2022		
52384	36109405	Das A., Mishra A., Kashyap A., Naika M.B.N., Barah P.	"KRiShI": a manually curated knowledgebase on rice sheath blight disease.	Funct. Integr. Genomics			2022		
52385	36171140	Butt H., Ramirez J.L.M., Mahfouz M.	Synthetic evolution of herbicide resistance using a T7 RNAP-based random DNA base editor.	Life Sci Alliance	5(12)		2022		
52386	36115339	Chiu C.H., Roszak P., Orvo?ov? M., Paszkowski U.	Arbuscular mycorrhizal fungi induce lateral root development in angiosperms via a conserved set of MAMP receptors.	Curr. Biol.	32(20)	4428-4437.e3	2022	CERK1,D14,D3,D10,CEBIP	OsCERK1, OsLysM-RLK9, Os-CERK1, Os-LysM-RLK9, OsLysMRLK9, OsCERK1/OsLYK9, OsLYK9, LYK9,d14(d10), dwf13, d10, d14, D88, HTD2, OsHTD2, OsD14, qPPB3, D88/D14, HTD4,d3, dwf3, D3/OsMAX2, Os_F0760, SOL1, OsORE9, ORE9, MAX2, OsRFPH2-10, RFPH2-10, OsD3,  OsFBL27, FBL27,d10(d15,d16), d16, d15, dwf9, d10, OsCCD8b, OsCCD8, CCD8, OsD10,CEBiP, Os-LYP1, LYP1, OsCEBiP
52387	36235442	Chen L.H., Cheng Z.X., Xu M., Yang Z.J., Yang L.T.	Effects of Nitrogen Deficiency on the Metabolism of Organic Acids and Amino Acids in <i>Oryza sativa</i>.	Plants (Basel)	11(19)		2022		
52388	36235424	Sekhar S., Das S., Panda D., Mohanty S., Mishra B., Kumar A., Navadagi D.B., Sah R.P., Pradhan S.K., Samantaray S., Baig M.J., Behera L., Mohapatra T.	Identification of microRNAs That Provide a Low Light Stress Tolerance-Mediated Signaling Pathway during Vegetative Growth in Rice.	Plants (Basel)	11(19)		2022		
52389	36111856	Zhang L., Liu Y., Wei G., Lei T., Wu J., Zheng L., Ma H., He G., Wang N.	pollen WALL ABORTION 1 is essential for pollen wall development in rice.	Plant Physiol.			2022	AMD1	OsAMD1, PWA1, OsPWA1 
52390	36142525	Zhu A., Li J., Fu W., Wang W., Tao L., Fu G., Chen T., Feng B.	Abscisic Acid Improves Rice Thermo-Tolerance by Affecting Trehalose Metabolism.	Int J Mol Sci	23(18)		2022		
52391	36114452	Tp M.A., Kumar A., Anilkumar C., Sah R.P., Behera S., Marndi B.C.	Understanding natural genetic variation for grain phytic acid content and functional marker development for phytic acid-related genes in rice.	BMC Plant Biol.	22(1)	446	2022		
52392	36144260	Feng S.Y., Wu S.J., Chang Y.C., Ng L.T., Chang S.J.	Stimulation of GLUT4 Glucose Uptake by Anthocyanin-Rich Extract from Black Rice (<i>Oryza sativa</i> L.) via PI3K/Akt and AMPK/p38 MAPK Signaling in C2C12 Cells.	Metabolites	12(9)		2022		
52393	36235390	Wang H., Zhong L., Fu X., Huang S., Fu H., Shi X., Hu L., Cai Y., He H., Chen X.	Physiological and Transcriptomic Analyses Reveal the Mechanisms of Compensatory Growth Ability for Early Rice after Low Temperature and Weak Light Stress.	Plants (Basel)	11(19)		2022		
52394	36294954	Kaysar M.S., Sarker U.K., Monira S., Hossain M.A., Haque M.S., Somaddar U., Saha G., Chaki A.K., Uddin M.R.	Dissecting the Relationship between Root Morphological Traits and Yield Attributes in Diverse Rice Cultivars under Subtropical Condition.	Life (Basel)	12(10)		2022		
52395	36186421	Hu C., Jiang J., Li Y., Song S., Zou Y., Jing C., Zhang Y., Wang D., He Q., Dang X.	QTL mapping and identification of candidate genes using a genome-wide association study for heat tolerance at anthesis in rice (<i>Oryza sativa</i> L.).	Front Genet	13	983525	2022		
52396	36006168	Chang T., Li G., Ding Z., Li W., Zhu P., Lei W., Shangguan D.	Potential G-quadruplexes within the Promoter Nuclease Hypersensitive Sites of the Heat-Responsive Genes in Rice.	Chembiochem	23(20)	e202200405	2022		
52397	36087013	Gu T.Y., Qi Z.A., Chen S.Y., Yan J., Fang Z.J., Wang J.M., Gong J.M.	Dual-function DEFENSIN 8 mediates phloem cadmium unloading and accumulation in rice grains.	Plant Physiol.			2022	DEFL35,DEFL78,DEFL30,DEFL49,DEFL32,DEFL16,DEFL47,DEFL18,_,DEFL45,DEFL55,_,DEFL80,_,DEFL12,DEFL50,DEFL34,DEFL28,DEFL56,DEFL14,DEFL17,DEFL29,DEFL8,DEFL69,DEFL73,CAL1,DEFL7,CAL2,DEFL79,DEFL40,DEF3,DEFL33,DEFL21,DEFL10,DEFL31,DEFL74,DEFL75,DEFL81,DEFL2,DEFL6,DEFL44,DEFL70,DEFL9,DEFL15,DEFL72,DEFL71,DEFL38,DEFL25,DEFL43,XTH15,DEFL53,DEFL4,PDF1.2,DEFL13,DEFL1,DEFL27,_	OsDEFL35,OsDEFL78,OsDEFL30,OsDEFL49,OsDEFL32,OsDEFL16,OsDEFL47,OsDEFL18,DEFL4, OsDEFL4,OsDEFL45,OsDEFL55,DEFL2, OsDEFL2,OsDEFL80,DEFL3, OsDEFL3,OsDEFL12,OsDEFL50,OsDEFL34,OsDEFL28,OsDEFL56,OsDEFL14,OsDEFL17,OsDEFL29,OsDEFL8, OsDf-08, Df-08, DEF8, OsDEF8,OsDEFL69,OsDEFL73,OsCPT1, CPT1, DEFL7, OsDEFL7, OsDf-07, Df-07, OsPR12, PR12, DEF7, OsDEF7, OsAFP1, AFP1, OsPDF2.2, PDF2.2,OsDEFL7,DEFL12, OsDEFL12, OsDf-12, Df-12, OsCAL2, DEF12, OsDEF12,OsDEFL79,OsDEFL40,OsDEF3,OsDEFL33,OsDEFL21,OsDEFL10, OsDf-10, Df-10, DEF10, OsDEF10,OsDEFL31,OsDEFL74,OsDEFL75,OsDEFL81,OsEnS-25, OsDEFL2, OsDf-02, Df-02, DEFL1, OsDEFL1,OsDEFL6,OsDEFL44,OsDEFL70,OsDEFL9, OsDf-09, Df-09, DEF9, OsDEF9,OsDEFL15,OsDEFL72,OsDEFL71,OsDEFL38,OsDEFL25,OsDEFL43,OsXTH15, DEFL9, OsDEFL9,OsDEFL53,OsDEFL4, OsDf-04, Df-04, DEF4, OsDEF4,OsPDF1.2, DEFL6, OsDEFL6, OsDf-06, Df-06, DEF6, OsDEF6,OsEnS-108, EnS-108, DEFL, OsDEFL13,OsDEFL1, OsDf-01, Df-01, DEF1, OsDEF1,OsDEFL27,DEFL8, OsDEFL8
52398	36177842	Zhang Y., Wu Y., Li G., Qi A., Zhang Y., Zhang T., Qi Y.	Genome-wide investigation of multiplexed CRISPR-Cas12a-mediated editing in rice.	Plant Genome		e20266	2022		
52399	36212313	Luo X., Wang L., Fu Y., Liu Q., Chen G., Liu Y., He W., Gao A., Xu J., Deng H., Xing J.	FERONIA-like receptor 1-mediated calcium ion homeostasis is involved in the immune response.	Front Plant Sci	13	934195	2022	GLR1.1,DRUS1,CAX4,WRKY45,ACA5,ACA9,PR1A,CAX1A,GLR1.2,GLR1.3,ACA7,ACA4	OsGLR1.1, OsGLR1.2, GLR1.2, OsGLR9.8, GLR9.8,OsCrRLK1L8, CrRLK1L8, FLR1, OsFLR1, OsMRLK11, MRLK11, OsDRUS1,CAX2, OsCAX2, OsCAX4, OsSTA47, OsNCX3, NCX3,OsWRKY45, OsWRKY45-1, OsWRKY45-2, WRKY45-1, WRKY45-2,osACA5, OsACA9, ACA9, OsACA5, OsPM12ATP4, PM12ATP4,osACA9, OsACA2, ACA2, OsPM2ATP9,OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1, OsPR1b, PR1alpha, OsPR1alpha,OsCAX1a, CAX1a, CAX1, OsCAX1, OsNCX2, OsNCX2.1, OsNCX2.2, NCX2, OsVCAX1a,OsGLR1.2, OsGLR1.4, GLR1.4, OsGLR2.2, GLR2.2,OsGLR1.3, OsGLR1.1, GLR1.1, OsGLR9.7, GLR9.7,osACA7, OsACA6, ACA6, OsACA7, OsPM5ATP4, PM5ATP4 ,osACA4, OsACA8, ACA8, OsACA4
52400	36149297	Wang G., Li X., Shen W., Li M.W., Huang M., Zhang J., Li H.	The chromatin accessibility landscape of pistils and anthers in rice.	Plant Physiol.			2022		
52401	36142294	Kim J.H., Yu J., Kim H.K., Kim J.Y., Kim M.S., Cho Y.G., Bae S., Kang K.K., Jung Y.J.	Genome Editing of Golden SNP-Carrying Lycopene epsilon-cyclase (<i>LcyE</i>) Gene Using the CRSPR-Cas9/HDR and Geminiviral Replicon System in Rice.	Int J Mol Sci	23(18)		2022		
52402	36247578	Liang J., Chen R., Zhang F., Wang Q., Yang Y., Lv M., Yan S., Gao S.	Full-length chloroplast genome of Dongxiang wild rice reveals small single-copy region switching.	Front Plant Sci	13	929352	2022		
52403	36036619	Wang H., He Y., Wang Y., Li Z., Hao J., Song Y., Wang M., Zhu J.K.	Base editing-mediated targeted evolution of ACCase for herbicide-resistant rice mutants.	J Integr Plant Biol	64(11)	2029-2032	2022		
52404	36087348	Liu C., Zhu X., Zhang J., Shen M., Chen K., Fu X., Ma L., Liu X., Zhou C., Zhou D.X., Wang G.	eQTLs play critical roles in regulating gene expression and identifying key regulators in rice.	Plant Biotechnol. J.	20(12)	2357-2371	2022	CPS2,MAS,KS4,KSL10,CYP71Z6,BHLH26,KO4,KS5,KS6,CPS4,KS8	OsCPS2, cps2, OsCPS2ent, CYC2, OsCyc2, OsCYC2, OsCPSL1, cpsl1, OsCyc2/OsCPS2, OsTPS7, Os-CPS2, TPS13, OsTPS13,OsMAS, MAS1, OsMAS1, OsMAS/SDR110C-MS1, SDR110C-MS1, OsSDR110C-MS1, OsMS1, MS1,OsKS4, KS4, KSL4, OsKSL4, DTS2, OsDTS2, OsTPS16, TPS16, TPS8, OsTPS8,OsKSL10, KS10, OsKS10, OsTPS33, TPS33, TPS21, OsTPS21,Oscyp71Z6, OsCYP71Z5, CYP71Z5,OsbHLH026, bHLH026, bHLH26,OsKO4, OsKOL4, KOS1, CYP701A8, OsCYP701A8, OsKO2, CYP701A8/OsKOL4,OsKS5, KS5, KSL5, OsKSL5, KSL5i, OsKSL5i, KSL5j, OsKSL5j, KS6, OsKS6, OsTPS8, TPS45, OsTPS45,OsKS6, KS6, KSL6, OsKSL6, KS5, OsKS5, OsTPS9, TPS9, TPS14, OsTPS14,OsCPS4, CYC1, OsCYC1, OsCyc1, cpsl3, OsCPSL3, OsCPSsyn, OsCyc1/OsCPS4, OsTPS15, Os-CPS4, TPS11, OsTPS11,OsKS8, KS8, KSL8, OsKSL8, DTC2, OsDTC2, OsDTC2/OsKS8, OsTPS32, TPS17, OsTPS17, KSL11, OsKSL11
52405	36204059	Khanna A., Anumalla M., Catolos M., Bhosale S., Jarquin D., Hussain W.	Optimizing predictions in IRRI's rice drought breeding program by leveraging 17 years of historical data and pedigree information.	Front Plant Sci	13	983818	2022		
52406	36161021	Wang M., Liu X., Yang J., Wang Z., Wang H., Wang X.	CRISPR/Cas12a-based biosensing platform for the on-site detection of single-base mutants in gene-edited rice.	Front Plant Sci	13	944295	2022		
52407	36075219	Bouain N., Cho H., Sandhu J., Tuiwong P., Prom-U-Thai C., Zheng L., Shahzad Z., Rouached H.	Plant growth stimulation by high CO2 depends on phosphorus homeostasis in chloroplasts.	Curr. Biol.	32(20)	4493-4500.e4	2022		
52408	36147244	Sehar S., Feng Q., Adil M.F., Sahito F.S., Ibrahim Z., Baloch D.M., Ullah N., Ouyang Y., Guo Y., Shamsi I.H.	Tandem application of endophytic fungus <i>Serendipita indica</i> and phosphorus synergistically recuperate arsenic induced stress in rice.	Front Plant Sci	13	982668	2022		
52409	36100633	Ookawa T., Nomura T., Kamahora E., Jiang M., Ochiai Y., Samadi A.F., Yamaguchi T., Adachi S., Katsura K., Motobayashi T.	Pyramiding of multiple strong-culm genes originating from indica and tropical japonica to the temperate japonica rice.	Sci Rep	12(1)	15400	2022		
52410	36188128	Li Y., Wu X., Zhang Y., Zhang Q.	CRISPR/Cas genome editing improves abiotic and biotic stress tolerance of crops.	Front Genome Ed	4	987817	2022		
52411	35798354	Soltanpour S., Tarinejad A., Hasanpur K., Majidi M.	A meta-analysis of microarray data revealed hub genes and transcription factors involved in drought stress response in rice (<i>Oryza sativa</i> L.).	Funct. Plant Biol.	49(10)	898-916	2022		
52412	36062386	Siriwong S., Tanthanuch W., Srisamut D., Chantarakhon C., Kamkajon K., Thumanu K.	Performance Evaluation of Focal Plane Array (FPA)-FTIR and Synchrotron Radiation (SR)-FTIR Microspectroscopy to Classify Rice Components.	Microsc. Microanal.		1-10	2022		
52413	36181935	Li Z., Gao J., Tian Y., Wang B., Xu J., Fu X., Han H., Wang L., Zhang W., Wang Y., Deng Y., Gong Z., Peng R., Yao Q.	ElNFS1, a nitroreductase gene from Enterobacter ludwigii, confers enhanced detoxification and phytoremediation of 4-nitrobenzaldehyde in rice.	Environ. Pollut.	314	120292	2022		
52414	35972796	Liu L., Li Y., Xu Z., Chen H., Zhang J., Manion B., Liu F., Zou L., Fu Z.Q., Chen G.	The Xanthomonas type III effector XopAP prevents stomatal closure by interfering with vacuolar acidification.	J Integr Plant Biol	64(10)	1994-2008	2022		
52415	36066452	Aslam M.M., Pueyo J.J., Pang J., Yang J., Chen W., Chen H., Waaseem M., Li Y., Zhang J., Xu W.	Root acid phosphatases and rhizobacteria synergistically enhance white lupin and rice phosphorus acquisition.	Plant Physiol.			2022		
52416	36246658	Srikakulam N., Sridevi G., Pandi G.	High-quality reference transcriptome construction improves RNA-seq quantification in <i>Oryza sativa</i> indica.	Front Genet	13	995072	2022		
52417	36304839	Lou D., Li F., Ge J., Fan W., Liu Z., Wang Y., Huang J., Xing M., Guo W., Wang S., Qiao W., Han Z., Qian Q., Yang Q., Zheng X.	LncPheDB: a genome-wide lncRNAs regulated phenotypes database in plants.	Abiotech	3(3)	169-177	2022		
52418	36070104	Yadavalli V.R., Balakrishnan D., Surapaneni M., Addanki K., Mesapogu S., Beerelli K., Desiraju S., Voleti S.R., Neelamraju S.	Mapping QTLs for yield and photosynthesis-related traits in three consecutive backcross populations of Oryza sativa cultivar Cottondora Sannalu (MTU1010) and Oryza rufipogon.	Planta	256(4)	71	2022		
52419	35791818	Adu B.G., Argete A.Y.S., Egawa S., Nagano A.J., Shimizu A., Ohmori Y., Fujiwara T.	A Koshihikari X Oryza rufipogon Introgression Line with a High Capacity to Take up Nitrogen to Maintain Growth and Panicle Development under Low Nitrogen Conditions.	Plant Cell Physiol.	63(9)	1215-1229	2022		
52420	36056565	Zhang A., You H., Cao L., Shi Y., Chen J., Shen Y., Tao S., Cheng Z., Zhang W.	Low cell number ChIP-seq reveals chromatin state-based regulation of gene transcription in the rice male meiocytes.	Plant Biotechnol. J.	20(12)	2236-2238	2022		
52421	36031742	Shi C., Zhang J., Wu B., Jouni R., Yu C., Meyers B.C., Liang W., Fei Q.	Temperature-sensitive male sterility in rice determined by the roles of AGO1d in reproductive phasiRNA biogenesis and function.	New Phytol.	236(4)	1529-1544	2022		
52422	36208055	Geng L., Li Q., Jiao L., Xiang Y., Deng Q., Zhou D.X., Zhao Y.	WOX11 and CRL1 act synergistically to promote crown root development by maintaining cytokinin homeostasis in rice.	New Phytol.			2022		
52423	36240912	Huang J., Chen Z., Lin J., Guan B., Chen J., Zhang Z., Chen F., Jiang L., Zheng J., Wang T., Chen H., Xie W., Huang S., Wang H., Huang Y., Huang R.	GW2.1, a new allele of GW2, improves grain weight and grain yield in rice.	Plant Sci.	325	111495	2022		
52424	36252923	Yang S., Fu Y., Zhang Y., Peng Yuan De., Li S., Kumar V., Mei Q., Hu Xuan Y.	Rhizoctonia solani transcriptional activator interacts with rice WRKY53 and grassy tiller 1 to activate SWEET transporters for nutrition.	Journal of Advanced Research			2022		
52425	35921240	Suzuki Y., Shiina M., Takegahara-Tamakawa Y., Miyake C., Makino A.	Overexpression of Chloroplast triosephosphate isomerase Marginally Improves Photosynthesis at Elevated CO2 Levels in Rice.	Plant Cell Physiol.	63(10)	1500-1509	2022		
52426	36218268	Tian Y., Zhong D., Li X., Shen R., Han H., Dai Y., Yao Q., Zhang X., Deng Q., Cao X., Zhu J.K., Lu Y.	High-throughput genome editing in rice with a virus-based surrogate system.	J Integr Plant Biol			2022		
52427	36279633	Kang S.G., Lee D.S., Do G.S., Pandeya D., Matin M.N.	Genetic analysis of a drooping leaf mutant allele DL-6 associated with a twisted and folded leaf base caused by a deficiency in midrib development in rice.	J. Plant Physiol.	279	153837	2022		
52428	36325550	Zhang J., Wang S., Wu X., Han L., Wang Y., Wen Y.	Identification of QTNs, QTN-by-environment interactions and genes for yield-related traits in rice using 3VmrMLM.	Front Plant Sci	13	995609	2022		
52429	36362013	Mun B.G., Shahid M., Lee G.S., Hussain A., Yun B.W.	A Novel rhs1 Locus in Rice Attributes Seed-Pod SHATTERING by the Regulation of Endogenous S-Nitrosothiols.	Int J Mol Sci	23(21)		2022	SH-H,_,NOE1,NOA1,SH4,GSNOR1,_,SHAT1,QSH1,RHS1	sh-h, OsSH-H, OsCPL1, CPL1,OsNIA1, OsNia1, NIA1, Nia1, OsNR, NR, OsNR2, NR2, NIA2,CATC, OsCat, OsCatC, OsCATC, OsNOE1, noe1, catC, OsCATC, CAT3, OsCAT3, LLM9428, OsLLM9428,OsNOA1,sh4, SH4, SHAT2, SHA1, qSH4, QSH4, OsSh4, Sh4, Osh4, OsMSL23, MSL23,OsGSNOR, GSNOR, OsGSNOR1,OsNR1, NR1, nia1, OsNIA1, NIA1, OsNIA2, NIA2,OsSHAT1, AP2/EREBP#043, AP2/EREBP43, AP2-5, DLN124, OsDLN124, ObSHAT1, OgSHAT1, OrSHAT1 ,qSH1, qsh1, qSH-1, RIL1, OsRIL1 ,OsRHS1, OsPUB27, PUB27
52430	36361748	Zhou D., Zhou X., Sun C., Tang G., Liu L., Chen L., He H., Xiong Q.	Transcriptome and Metabolome Analysis Provides Insights into the Heterosis of Yield and Quality Traits in Two Hybrid Rice Varieties (<i>Oryza sativa</i> L.).	Int J Mol Sci	23(21)		2022		
52431	36272547	Wang H., Jiao X., Zhang X., Zhang M., Liu Y., Chen X., Fang R., Yan Y.	Ammonium protects rice against rice stripe virus by activating HDA703/OsBZR1-mediated BR signaling.	Plant Sci.	326	111504	2022		
52432	36244523	Liu J., Miao H., Wang Y., Zhang J., Zhang J., Zhen Y., Wang J., Jia C., Xu B., Li X., Xie J., Jin Z.	Elucidating the role of MaBAM9b in starch degradation.	Plant Sci.	325	111497	2022		
52433	36365282	Prodhan Z.H., Islam S.A., Alam M.S., Li S., Jiang M., Tan Y., Shu Q.	Impact of <i>OsBadh2</i> Mutations on Salt Stress Response in Rice.	Plants (Basel)	11(21)		2022	GAD1,_,ALDH18B2,BAD1,MYB30,SK2(T)(SCL, FGR),GAD2,DREB1C,GAD3,NAC3,HAK5,P5CS,ERF68	OsGAD1, GDC,GDCi, OsGDCi, OsGAD, GAD, OsGAD4, GAD4,P5CS2, OsP5CS2, OsALDH18B2 ,Badh1, badh1, BAD1, BADH1, OsBADH1, BADH, OsALDH10A5, ALDH10A5 ,OsMYB30, OsMYB5P, MYB5P, OsMYB13a, MYB13a, Os2R_MYB26, 2R_MYB26, OsMYB30C, MYB30C,sk2(t)(scl, fgr), fgr, scl, BAD2, BADH2, sk2, OsBADH2, Badh2, badh2, Os2AP, BADH-2, OsALDH10A8, ALDH10A8 ,OsGAD2,OsDREB1C, CBF1, ERF26, OsERF026, OsERF#026, OsERF26, AP2/EREBP#098, AP2/EREBP98, OsCBF2, CBF2,OsGAD3,OsNAC3, NAC67, ONAC067, OnNAC3*, OsNAC3/ONAC067, DLN180, OsDLN180,OsHAK5, FCO13, OsFCO13,OsP5CS, P5CS1, OsP5CS1, OsALDH18B1, ALDH18B1, OsP5CS-1, P5CS-1,OsERF#068, OsERF068, OsERF68, AP2/EREBP#003, AP2/EREBP3, ERF2
52434	36242043	Jiang H., Ren Y., Guo J., Yang H., Zhu X., Li W., Tao L., Zhan Y., Wang Q., Wu Y., Liu B., Ye Y.	CEF3 is involved in membrane trafficking and essential for secondary cell wall biosynthesis and its mutation enhanced biomass enzymatic saccharification in rice.	Biotechnol Biofuels Bioprod	15(1)	111	2022	BC7,XAX1,BC6,CSLF6,IRX8L,CESA7,IRX14,BC12,DPH1	OsCesA4, OsCESA4, CESA4, OS_CESA04, BC11, bc7t, Bc7(t), bc-7, OsCesA 4, CesA4, FC17/CESA4, FC17, OsFC17,OsXAX1, OsGT61-1, GT61-1,Bc6*, Bc6, OsCesA9, CESA9, OsCESA9, OS_CESA09, OsCesA 9, CesA9, BC88, SDBC1, OsSDBC1,OsCslF6, OsCSLF6, OsCLD3, CLD3,OsGAUT20, GAUT20, OsIRX8L,OsCesA7, OsCESA7, OS_CESA07, OsCesA 7, CesA7,OsIRX14, OsGT43J, GT43J, OsGT43J/OsIRX14,bc12, gdd, GDD1, BC12/GDD1, OsGDD1, OsBC12/GDD1, OsBC12, LGW, OsLGW,SCD2, OsSCD2, OsDPH1, CEF3, OsCEF3
52435	36282529	Chen L., Dong X., Yang H., Chai Y., Xia Y., Tian L., Qu L.Q.	Cytosolic DISPROPORTIONATING ENZYME2 is essential for pollen germination and pollen tube elongation in rice.	Plant Physiol.			2022		
52436	36233306	Huang J., Liu F., Chao D., Xin B., Liu K., Cao S., Chen X., Peng L., Zhang B., Fu S., Xia J.	The WRKY transcription factor OsWRKY54 Is Involved in salt tolerance in Rice.	Int J Mol Sci	23(19)		2022		
52437	36255375	Zhao F.J., Chang J.D.	A weak allele of OsNRAMP5 for safer rice.	J. Exp. Bot.	73(18)	6009-6012	2022		
52438	36275585	Hu M., Chen G., Peng L., Li C., He X., Zhang Q., Yang H., Liang C., Kuang H., Lan Y., Li T.	Response of yield and quality of giant embryo rice to nitrogen application and analysis of lipid-lowering effect.	Front Plant Sci	13	1023677	2022		
52439	36196761	Wang Y., Li F., Zhang F., Wu L., Xu N., Sun Q., Chen H., Yu Z., Lu J., Jiang K., Wang X., Wen S., Zhou Y., Zhao H., Jiang Q., Wang J., Jia R., Sun J., Tang L., Xu H., Hu W., Xu Z., Chen W., Guo A., Xu Q.	Time-ordering japonica/geng genomes analysis indicates the importance of large structural variants in rice breeding.	Plant Biotechnol. J.			2022		
52440	36296580	Fan Y., Yu R., Chen Y., Sun Y., Waterhouse G.I.N., Xu Z.	A Capillary Electrophoresis Method Based on Molecularly Imprinted Solid-Phase Extraction for Selective and Sensitive Detection of Histamine in Foods.	Molecules	27(20)		2022		
52441	36175003	Qiu J., Liu Z., Xie J., Lan B., Shen Z., Shi H., Lin F., Shen X., Kou Y.	Dual impact of ambient humidity on the virulence of Magnaporthe oryzae and basal resistance in rice.	Plant Cell Environ.	45(12)	3399-3411	2022		
52442	36085524	Uchiyama M., Fudaki R., Kobayashi T., Adachi Y., Ukai Y., Yoshihara T., Shimada H.	Rice OsHAK5 is a major potassium transporter that functions in potassium uptake with high specificity but contributes less to cesium uptake.	Biosci. Biotechnol. Biochem.	86(11)	1599-1604	2022		
52443	36290768	Wang J., Li Y., Wang Y., Du F., Zhang Y., Yin M., Zhao X., Xu J., Yang Y., Wang W., Fu B.	Transcriptome and Metabolome Analyses Reveal Complex Molecular Mechanisms Involved in the salt tolerance of Rice Induced by Exogenous Allantoin.	Antioxidants (Basel)	11(10)		2022		
52444	36287898	Khan S., Akhtar N., Rehman S.U., Shujah S., Rha E.S., Jamil M.	<i>Bacillus subtilis</i> Synthesized Iron Oxide Nanoparticles (Fe3O4 NPs) Induced Metabolic and Anti-Oxidative Response in Rice (<i>Oryza sativa</i> L.) under Arsenic Stress.	Toxics	10(10)		2022		
52445	36233354	Zhang L., Xia Y., Dong Y., Xie T., Sun W., Yu S.	Natural Variation of fatty acid desaturase Gene Affects Linolenic Acid Content and Starch Pasting Viscosity in Rice Grains.	Int J Mol Sci	23(19)		2022		
52446	36365003	Rajer F.U., Samma M.K., Ali Q., Rajar W.A., Wu H., Raza W., Xie Y., Tahir H.A.S., Gao X.	<i>Bacillus</i> spp.-Mediated Growth Promotion of Rice Seedlings and Suppression of Bacterial Blight Disease under Greenhouse Conditions.	Pathogens	11(11)		2022		
52447	36233316	Xie W., Ding C., Hu H., Dong G., Zhang G., Qian Q., Ren D.	Molecular Events of Rice AP2/ERF Transcription Factors.	Int J Mol Sci	23(19)		2022		
52448	36271308	Bashyal B.M., Rawat K., Parmar P., Gupta A.K., Gupta S., Krishnan S.G., Choudhary R., Ercisli S., Kovacevic A., Aggarwal R.	Transcriptomic analysis of bakanae disease resistant and susceptible rice genotypes in response to infection by Fusarium fujikuroi.	Mol. Biol. Rep.			2022		
52449	36240664	Wang G., Zhang L., Zhang S., Li B., Li J., Wang X., Zhang J., Guan C., Ji J.	The combined use of a plant growth promoting Bacillus sp. strain and GABA promotes the growth of rice under salt stress by regulating antioxidant enzyme system, enhancing photosynthesis and improving soil enzyme activities.	Microbiol. Res.	266	127225	2022		
52450	36220412	Li F., Marzouk A.S., Dewer Y., Kang H., Wang G.	Genome-wide association study of rice leaf metabolites and volatiles.	Int. J. Biol. Macromol.	222(Pt B)	2479-2485	2022		
52451	36203361	Wang Y., Teng Z., Li H., Wang W., Xu F., Sun K., Chu J., Qian Y., Loake G.J., Chu C., Tang J.	An activated form of NB-ARC protein RLS1 functions with cysteine-rich receptor-like protein RMC to trigger cell death in rice.	Plant Commun		100459	2022	PR10A,GNS1,PR1B,APX1,CATA,PR5,LRD43,RMC,NOE1	PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsPR2, PR2, Gns1, OsGNS1, OsEGL1,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1, OsPR1a, PR1a,OsAPX1, APXa, OsAPXa, OsAPx01, OsAPx1, OSAPX1, APx1, cAPX, APX2, cAPXa, OscAPXa,CATA1, Cat A1*, OSCAT-A, Cat2, CatA1, CAT-A, OsCatA, OsCAT, CAT, catA, OSCATA, OsCATc, OsCATA, OsCAT1A, CAT1, OsCAT1, OsCATC, OsCAT2,OsPR5, Pir2, PR-5, PR5-1,RLS1, OsRLS1, OsLRD43, NOE2, OsNOE2,OsRMC, OsRLK, OsDUF26, DUF26, OsCBMIP, CBMIP, NCS, OsNCS, OsCRK5, CRK5,CATC, OsCat, OsCatC, OsCATC, OsNOE1, noe1, catC, OsCATC, CAT3, OsCAT3, LLM9428, OsLLM9428
52452	36340409	Sun C., He C., Zhong C., Liu S., Liu H., Luo X., Li J., Zhang Y., Guo Y., Yang B., Wang P., Deng X.	Bifunctional regulators of photoperiodic flowering in short day plant rice.	Front Plant Sci	13	1044790	2022		
52453	36302917	Li F., Liu Y., Zhang X., Liu L., Yan Y., Ji X., Kong F., Zhao Y., Li J., Peng T., Sun H., Du Y., Zhao Q.	Transcriptome and Metabolome Analyses Reveals the Pathway and Metabolites of Grain Quality Under Phytochrome B in Rice (Oryza sativa L.).	Rice (N Y)	15(1)	52	2022		
52454	36222360	Morita R., Crofts N., Miura S., Ikeda K.I., Aoki N., Fukayama H., Fujita N.	Characterization of the Functions of starch synthase IIIb Expressed in the Vegetative Organs of Rice (Oryza sativa L.).	Plant Cell Physiol.			2022		
52455	36365352	Shen L., Tian F., Cheng Z., Zhao Q., Feng Q., Zhao Y., Han B., Fang Y., Lin Y., Chen R., Wang D., Sun W., Sun J., Zeng H., Yao N., Gao G., Luo J., Xu Z., Bai S.	OsMADS58 Stabilizes Gene Regulatory Circuits during Rice Stamen Development.	Plants (Basel)	11(21)		2022		
52456	36253558	Zhao A., Cui C., Li F., Li C., Naveed S., Dong J., Gao X., Rustgi S., Wen S., Yang M.	Heterologous expression of the TaPI-PLC1-2B gene enhanced drought and salt tolerance in transgenic rice seedlings.	Heredity			2022		
52457	36308725	Fukuda M., Imaizumi T., Koarai A.	Seed germination responses to temperature and water availability in weedy rice.	Pest Manag. Sci.			2022		
52458	36313447	Wang W., Zhang F., Liu D., Chen K., Du B., Qiu X., Xu J., Xing D.	Distribution characteristics of selenium, cadmium and arsenic in rice grains and their genetic dissection by genome-wide association study.	Front Genet	13	1007896	2022		
52459	36280649	Li K.T., Peng S.Y., Zhang B., Peng W.F., Yu S.J., Cheng X.	Exopolysaccharides from Lactobacillus plantarum reduces cadmium uptake and mitigates cadmium toxicity in rice seedlings.	World J. Microbiol. Biotechnol.	38(12)	243	2022		
52460	36252538	Wei H., Liu M., Zhang K., Li J., Ouyang X.	Heterologous expression of family GH11 Aspergillus niger xylanase B (AnXylB11) in Pichia pastoris and competitive inhibition by riceXIP: An experimental and simulation study.	Colloids Surf B Biointerfaces	220	112907	2022		
52461	36340357	Shah G., Fiaz S., Attia K.A., Khan N., Jamil M., Abbas A., Yang S.H., Jumin T.	Indole pyruvate decarboxylase gene regulates the auxin synthesis pathway in rice by interacting with the indole-3-acetic acid-amido synthetase gene, promoting root hair development under cadmium stress.	Front Plant Sci	13	1023723	2022		
52462	36235507	Zhang A., Liu Y., Wang F., Kong D., Bi J., Zhang F., Luo X., Wang J., Liu G., Luo L., Yu X.	Molecular Breeding of Water-Saving and Drought-Resistant Rice for Blast and Bacterial Blight Resistance.	Plants (Basel)	11(19)		2022		
52463	36361593	Xu N., Xu H., Xu Z., Li F., Xu Q.	Introgression of a Complex Genomic Structural Variation Causes Hybrid Male Sterility in <i>GJ</i> Rice (<i>Oryza sativa</i> L.) Subspecies.	Int J Mol Sci	23(21)		2022		
52464	36293364	Pe?uela M., Gallo-Franco JJ., Finke J., Rocha C., Gkanogiannis A., Ghneim-Herrera T., Lorieux M.	Methylation in the CHH Context Allows to Predict Recombination in Rice.	Int J Mol Sci	23(20)		2022		
52465	36263892	Li Y., Han S., Qi Y.	Advances in structure and function of auxin response factor in plants.	J Integr Plant Biol			2022		
52466	36386722	Ye S., Yan R., Li X., Lin Y., Yang Z., Ma Y., Ding Z.	Biocontrol potential of <i>Pseudomonas rhodesiae</i> GC-7 against the root-knot nematode <i>Meloidogyne graminicola</i> through both antagonistic effects and induced plant resistance.	Front Microbiol	13	1025727	2022		
52467	35976143	Liu K., Chen E., Gu Z., Dai B., Wang A., Zhu Z., Feng Q., Zhou C., Zhu J., Shangguan Y., Wang Y., Li Z., Hou Q., Lv D., Wang C., Huang T., Wang Z., Huang X., Han B.	A retrotransposon insertion in MutL-homolog 1 affects wild rice seed set and cultivated rice crossover rate.	Plant Physiol.	190(3)	1747-1762	2022		
52468	36388599	Dai L., Lu X., Shen L., Guo L., Zhang G., Gao Z., Zhu L., Hu J., Dong G., Ren D., Zhang Q., Zeng D., Qian Q., Li Q.	Genome-wide association study reveals novel QTLs and candidate genes for seed vigor in rice.	Front Plant Sci	13	1005203	2022		
52469	36365290	Yang W., Jiang X., Xie Y., Chen L., Zhao J., Liu B., Zhang S., Liu D.	Transcriptome and Metabolome Analyses Reveal New Insights into the Regulatory Mechanism of Head milled rice Rate.	Plants (Basel)	11(21)		2022		
52470	36196616	Zhang X., Wang Y., Wang X., Zhu Z., Zhang X., Jia L., Li Y., Tian W., Chen H., Zhu X., He G., Sang X.	A very-long-chain fatty acid synthesis gene, SD38, influences plant height by activating ethylene biosynthesis in rice.	Plant J.			2022	SD38	OsSD38, OsKCS21, KCS21
52471	36194511	Wang J., Li X., Dong Q., Li C., Li J., Li N., Ding B., Wang X., Yu Y., Wang T., Zhang Z., Yu Y., Lang M., Zeng Z., Liu B., Gong L.	Chromatin architectural alterations due to null mutation of a major CG methylase in rice.	J Integr Plant Biol			2022		
52472	36388558	Ma Z., Jin Y.M., Wu T., Hu L., Zhang Y., Jiang W., Du X.	OsDREB2B, an AP2/ERF transcription factor, negatively regulates plant height by conferring GA metabolism in rice.	Front Plant Sci	13	1007811	2022		
52473	36364070	Alqahtani O., Mirajkar K.K., Kumar K R A., Mahnashi M.H., Shaikh I.A., Mitra S., Nagaraj H., More S.S., Muddapur U.M., Khan A.A., Sudarshan P.R.	In Vitro Antibacterial Activity of Green Synthesized Silver Nanoparticles Using <i>Azadirachta indica</i> Aqueous Leaf Extract against MDR Pathogens.	Molecules	27(21)		2022		
52474	36284279	Guo Z., Ma W., Cai L., Guo T., Liu H., Wang L., Liu J., Ma B., Feng Y., Liu C., Pan G.	Comparison of anther transcriptomes in response to cold stress at the reproductive stage between susceptible and resistant Japonica rice varieties.	BMC Plant Biol.	22(1)	500	2022		
52475	36202265	Sun T., Xie Q., Li C., Huang J., Yue C., Zhao X., Wang D.	Inorganic versus organic fertilizers: How do they lead to methylmercury accumulation in rice grains.	Environ. Pollut.	314	120341	2022		
52476	36359931	Li Z., Tan M., Deng H., Yang X., Yu Y., Zhou D., Dong H.	Geographical Origin Differentiation of Rice by LC-MS-Based Non-Targeted Metabolomics.	Foods	11(21)		2022		
52477	36352876	Kim K.W., Nawade B., Nam J., Chu S.H., Ha J., Park Y.J.	Development of an inclusive 580K SNP array and its application for genomic selection and genome-wide association studies in rice.	Front Plant Sci	13	1036177	2022		
52478	36220543	Qing D., Zhou Y., Pan Y., Yang X., Li J., Zhou W., Liang H., Chen W., Chen L., Lu C., Dai G., Deng G.	TMT-based quantitative proteomic analysis of indica rice cultivars reveals that novel components of the signaling pathways might play a role in grain length regulation.	J Proteomics	270	104745	2023		
52479	36290557	Shamim M., Sharma D., Bisht D., Maurya R., Kaashyap M., Srivastava D., Mishra A., Kumar D., Kumar M., Juturu V.N., Khan N.A., Chaudhary S., Hussain R., Singh K.N.	Proteo-Molecular Investigation of Cultivated Rice, Wild Rice, and Barley Provides Clues of Defense Responses against <i>Rhizoctonia solani</i> Infection.	Bioengineering (Basel)	9(10)		2022		
52480	36309612	Ullah U., Shalmani A., Ilyas M., Raza A., Ahmad S., Shah A.Z., Khan F.U., AzizUd-Din, Bibi A., Rehman S.U., Abbas Z., Buttar Z.A.	BZR proteins: identification, evolutionary and expression analysis under various exogenous growth regulators in plants.	Mol. Biol. Rep.			2022		
52481	36293019	Ye Y., Tan Y., Meng Y., You Q., Zhao D., Yang Q.	Combined Hybridization and Evaluation of High-Lysine Rice: Nutritional and Physicochemical Qualities and Field Performance.	Int J Mol Sci	23(20)		2022	DHDPS1,LKR/SDH,AK2	OsDHDPS1,OsLKR/SDH, OsLKR, OsSDH,OsAK2
52482	36325568	Yang J., Wei J., Xu J., Xiong Y., Deng G., Liu J., Fahad S., Wang H.	Mapping QTLs for anaerobic tolerance at germination and bud stages using new high density genetic map of rice.	Front Plant Sci	13	985080	2022		
52483	36309609	Das N., Ghosh Dhar D., Dhar P.	Editing the genome of common cereals (Rice and Wheat): techniques, applications, and industrial aspects.	Mol. Biol. Rep.			2022		
52484	36222825	Karvansara P.R., Kelly C., Krone R., Zenzen I., Ristova D., Silz E., Jobe T.O., Kopriva S.	Unique features of regulation of sulfate assimilation in monocots.	J. Exp. Bot.			2022		
52485	36311122	Li Y., Yang Z., Zhang Y., Guo J., Liu L., Wang C., Wang B., Han G.	The roles of HD-ZIP proteins in plant abiotic stress tolerance.	Front Plant Sci	13	1027071	2022		
52486	36293334	Li M., Pan X., Li H.	Pyramiding of <i>gn1a</i>, <i>gs3</i>, and <i>ipa1</i> Exhibits Complementary and Additive Effects on Rice Yield.	Int J Mol Sci	23(20)		2022		
52487	36252633	Li Y., Zhang C., Liang Y., Wang L., Xiong W.	Solubility and conformational characterization of rice glutelin after high temperature treatment.	Int. J. Biol. Macromol.			2022		
52488	36265726	Liu Q., Liu N., Lu H., Yuan W., Zhu L.	Polybrominated diphenyl ethers interact with the key protein involved in carbohydrate metabolism in rice.	Environ. Pollut.	316(Pt 1)	120466	2022		
52489	36352889	Ranaivo H.N., Lam D.T., Ueda Y., Pariasca Tanaka J., Takanashi H., Ramanankaja L., Razafimbelo T., Wissuwa M.	QTL mapping for early root and shoot vigor of upland rice (<i>Oryza sativa</i> L.) under P deficient field conditions in Japan and Madagascar.	Front Plant Sci	13	1017419	2022		
52490	36271113	Gong H., Han B.	Genetic introgression between different groups reveals the differential process of Asian cultivated rice.	Sci Rep	12(1)	17662	2022		
52491	36181551	Zhang F., Zhang C., Zhao X., Zhu S., Chen K., Zhou G., Wu Z., Li M., Zheng T., Wang W., Yan Z., Fei Q., Li Z., Chen J., Xu J.	Genomic Architecture of Yield Performance of an Elite Rice Hybrid Revealed by its Derived Recombinant Inbred Line and Their Backcross Hybrid Populations.	Rice (N Y)	15(1)	49	2022		
52492	36197542	Yadav N., Nagar P., Rakhi R., Kumar A., Rai A., Mustafiz A.	Transcript profiling of Polycomb gene family in Oryza sativa indicates their abiotic stress-specific response.	Funct. Integr. Genomics			2022		
52493	36233092	Singh L., Coronejo S., Pruthi R., Chapagain S., Subudhi P.K.	Integration of QTL Mapping and Whole Genome Sequencing Identifies Candidate Genes for Alkalinity Tolerance in Rice (<i>Oryza sativa</i>).	Int J Mol Sci	23(19)		2022		
52494	36198910	Baysal C., Bur?n S., He W., Jiang X., Capell T., Rubio L.M., Christou P.	Functional expression of the nitrogenase Fe protein in transgenic rice.	Commun Biol	5(1)	1006	2022		
52495	36208302	Suzuki Y., Ohsaki K., Takahashi Y., Wada S., Miyake C., Makino A.	Behavior of Photosystems II and I is Modulated Depending on N Partitioning to Rubisco in Mature Leaves Acclimated to Low N levels and Senescent Leaves in Rice.	Plant Cell Physiol.			2022		
52496	36262658	Xia Y., Wang Y., Hu Y., Zhan Y., Dan J., Tang N., Tian J., Cao M.	Double-seedlings and embryo-free seeds generated by genetic engineering.	Front Plant Sci	13	999031	2022		
52497	36361651	Xiao G., Zhou J., Huo Z., Wu T., Li Y., Li Y., Wang Y., Wang M.	The Shift in Synonymous Codon Usage Reveals Similar Genomic Variation during Domestication of Asian and African Rice.	Int J Mol Sci	23(21)		2022		
52498	36235474	Lv L., Luo J., Ahmed T., Zaki H.E.M., Tian Y., Shahid M.S., Chen J., Li B.	Beneficial Effect and Potential Risk of <i>Pantoea</i> on Rice Production.	Plants (Basel)	11(19)		2022		
52499	36259093	Yao C., Du L., Liu Q., Hu X., Ye W., Turlings T.C.J., Li Y.	Stemborer-induced rice plant volatiles boost direct and indirect resistance in neighboring plants.	New Phytol.			2022		
52500	36297750	Pongprayoon W., Panya A., Jaresitthikunchai J., Phaonakrop N., Roytrakul S.	Phosphoprotein Profile of Rice (<i>Oryza sativa</i> L.) Seedlings under Osmotic Stress after Pretreatment with Chitosan.	Plants (Basel)	11(20)		2022		
52501	36229931	Bonnamy M., Pinel-Galzi A., Gorgues L., Chalvon V., H?brard E., Ch?ron S., Nguyen T.H., Poulicard N., Sabot F., Pidon H., Champion A., C?sari S., Kroj T., Albar L.	Rapid evolution of an RNA virus to escape recognition by a rice NLR immune receptor.	New Phytol.			2022		
52502	36325552	Nie Y., Li G., Li J., Zhou X., Zhang Y., Shi Q., Zhou X., Li H., Chen X.L., Li Y.	A novel elicitor MoVcpo is necessary for the virulence of <i>Magnaporthe oryzae</i> and triggers rice defense responses.	Front Plant Sci	13	1018616	2022		
52503	0	Teng Z., Chen Y., Yuan Y., Peng Y., Yi Y., Yu H., Yi Z., Yang J., Peng Y., Duan M., Zhang J., Ye N.	Identification of microRNAs regulating grain filling of rice inferior spikelets in response to moderate soil drying post-anthesis	The Crop Journal	10	962-972	2022	SBDCP1,FLO5,LAC15,ACOT 	OsSBDCP1,OsSSIIIa, SSIII-2, OsSSIII-2, OsSS3A, SS3A, SS3a, OsSSSIIIa, SSIIIa, Flo5,OsLAC, LAC, OsLAC15, OsLAC13, LAC13 ,OsACOT 
52504	34445746	Hou M., Yu M., Li Z., Ai Z., Chen J.	Molecular Regulatory Networks for Improving Nitrogen Use Efficiency in Rice.	Int J Mol Sci	22(16)		2021	LOGL5	OsLOGL5
52505	31986202	Yang Z., Xing J., Wang L., Liu Y., Qu J., Tan Y., Fu X., Lin Q., Deng H., Yu F.	Mutations of two FERONIA-like receptor genes enhance rice blast resistance without growth penalty.	J. Exp. Bot.	71(6)	2112-2126	2020	CRRLK1L12,CRRLK1L10,RLCK183,DRUS1,RUPO,CRRLK1L3,CRRLK1L4,CRRLK1L1,CRRLK1L14,RLCK161,CRRLK1L15,CRRLK1L16,CRRLK1L6,CRRLK1L7,DRUS2	OsCrRLK1L12, CrRLK1L12, OsMRLK30, MRLK30, FLR5, OsFLR5,OsCrRLK1L10, CrRLK1L10, OsMRLK20, MRLK20, FLR16, OsFLR16,OsRLCK183, OsCrRLK1L2, CrRLK1L2, OsMRLK31, MRLK31, FLR4, OsFLR4,OsCrRLK1L8, CrRLK1L8, FLR1, OsFLR1, OsMRLK11, MRLK11, OsDRUS1,OsRLCK193, RLCK193, OsCrRLK1L13, CrRLK1L13, OsMRLK40, MRLK40, FLR9, OsFLR9,OsCrRLK1L3, CrRLK1L3, OsMRLK33, MRLK33, FLR3, OsFLR3,OsCrRLK1L4, CrRLK1L4, OsMRLK2, MRLK2, FLR14, OsFLR14,OsCrRLK1L1, CrRLK1L1, OsMRLK12, MRLK12, FLR10, OsFLR10,OsCrRLK1L14, CrRLK1L14, OsMRLK41, MRLK41, FLR15, OsFLR15,OsRLCK161, OsCrRLK1L9, CrRLK1L9, OsMRLK19, MRLK19, FLR8, OsFLR8,OsCrRLK1L15, CrRLK1L15, OsMRLK42, MRLK42, FLR7, OsFLR7,OsCrRLK1L16, CrRLK1L16, OsMRLK64, MRLK64, FLR11, OsFLR11,OsCrRLK1L6, CrRLK1L6, OsMRLK9, MRLK9, FLR12, OsFLR12,OsCrRLK1L7, CrRLK1L7, OsMRLK10, MRLK10, FLR13, OsFLR13,YK1, OsCrRLK1L5, CrRLK1L5, OsDRUS2, OsMRLK3, MRLK3, FLR2, OsFLR2
52506	20305274	Seino J., Ishii K., Nakano T., Ishida N., Tsujimoto M., Hashimoto Y., Takashima S.	Characterization of rice nucleotide sugar transporters capable of transporting UDP-galactose and UDP-glucose.	J. Biochem.	148(1)	35-46	2010	UGT3,UGT2,UGT1,UGT4	OsUGT3,OsUGT2,OsUGT1,OsUGT4
52507	22998587	Kang K., Lee K., Park S., Byeon Y., Back K.	Molecular cloning of rice serotonin N-acetyltransferase, the penultimate gene in plant melatonin biosynthesis.	J. Pineal Res.	55(1)	7-13	2013	ASMT1,SNAT1	ZRP4, OMT, ASMT, OsASMT, OsASMT1, ASMT1, OsASMT13, OsCOMT19, COMT19,OsSNAT1, OsSNAT, SNAT, OsGNAT2, GNAT2
52508	28484484	Bhattacharjee A., Sharma R., Jain M.	Over-Expression of OsHOX24 Confers Enhanced Susceptibility to Abiotic Stresses in Transgenic Rice via Modulating Stress-Responsive Gene Expression.	Front Plant Sci	8	628	2017	HOX24	Oshox24, OsHox24, OsSLI1, OsHDZ6, OsHDZIP6, HDZ6, HDZIP6
52509	36674457	Olga I Nedelyaeva, Larissa G Popova, Dmitrii E Khramov, Vadim S Volkov, Yurii V Balnokin	Chloride Channel Family in the Euhalophyte <i>Suaeda altissima</i> (L.) Pall: Cloning of Novel Members SaCLCa2 and SaCLCc2, General Characterization of the Family.	Int J Mol Sci	24(2)		2023	CBSCLC2,CBSCLC5,CBSCLC6,CBSCLC1,CBSCLC4,CLC2,CBSCLC7	OsCBSCLC2, OsCLC2, CLC2,OsCBSCLC5, OsCLC5, CLC5,OsCBSCLC6, OsCBSCLC6a, OsCBSCLC6b, OsCLC6, CLC6,OsCBSCLC1, OsCLC1, CLC1,OsCBSCLC4, OsCLC4, CLC4,CBSCLC3, OsCBSCLC3, OsCBSCLC3a, OsCBSCLC3b, OsCLC1, OsCLC-1, OsCLC2, OsCLC-2, CLC-2, OsCLC3, CLC3,OsCBSCLC7, OsCLC7, CLC7
52510	36347113	Alam M.S., Yang Z.K., Li C., Yan Y., Liu Z., Nazir M.M., Xu J.H.	Loss-of-function mutations of OsbHLH044 transcription factor lead to salinity sensitivity and a greater chalkiness in rice (Oryza sativa L.).	Plant Physiol. Biochem.	193	110-123	2022		
52511	36350394	Zhang M., Zhao R., Wang H., Ren S., Shi L., Huang S., Wei Z., Guo B., Jin J., Zhong Y., Chen M., Jiang W., Wu T., Du X.	OsWRKY28 positively regulates salinity tolerance by directly activating OsDREB1B expression in rice.	Plant Cell Rep.	42(2)	223-234	2023		
52512	35994773	Du Z., Deng S., Wu Z., Cai H., Xu F., Shi L., Wang S., Ding G., Wang C.	Characterization of the PHOSPHATE RESPONSE 2-dependent and -independent Pi-starvation response secretome in rice.	J. Exp. Bot.	73(19)	6955-6970	2022		
52513	36362237	Lu S., Zhang N., Xu Y., Chen H., Huang J., Zou B.	Functional Conservation and Divergence of <i>mos1</i> That Controls Flowering Time and seed size in Rice and <i>Arabidopsis</i>.	Int J Mol Sci	23(21)		2022	RFT1,HD3A,MOS1,SE1,EF1	FT-L 3, OsFTL3, FTL3, FT-L3, RFT, OsRFT1,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,OsMOS1,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, OsHd1,  Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 
52514	36342783	Gurel F., Wu Y., Pan C., Cheng Y., Li G., Zhang T., Qi Y.	On- and Off-Target Analyses of CRISPR-Cas12b Genome Editing Systems in Rice.	CRISPR J	6(1)	62-74	2023		
52515	36335549	Jiang J., Gao Z., Xiang Y., Guo L., Zhang C., Que F., Yu F., Wei Q.	Characterization of anatomical features, developmental roadmaps, and key genes of bamboo leaf epidermis.	Physiol Plant	174(6)	e13822	2022		
52516	36441771	Lv Q., Li X., Jin X., Sun Y., Wu Y., Wang W., Huang J.	Rice OsPUB16 modulates the 'SAPK9-OsMADS23-OsAOC' pathway to reduce plant water-deficit tolerance by repressing ABA and JA biosynthesis.	PLoS Genet.	18(11)	e1010520	2022	AOC,PUB16,LOX1,TIFY11A,SAPK9,MADS23	OsAOC, AOC1, OsAOC1, HB, CPM2, OsAOC4, AOC4,OsPUB16,  OsPUB16, PUB16,OsLOX1, OsLOX5,OsJAZ3, JAZ3, OsJAZ 9, OsJAZ9, Os-JAZ9, JAZ9, OsTIFY11a, OsJAZ6, JAZ6,OsSAPK9, OsSnRK2.9, SnRK2.9,OsMADS23, MADS-23
52517	36341575	Guo X., Zhang D., Wang Z., Xu S., Batisti&#x10d; O., Steinhorst L., Li H., Weng Y., Ren D., Kudla J., Xu Y., Chong K.	Cold-induced calreticulin OsCRT3 conformational changes promote OsCIPK7 binding and temperature sensing in rice.	EMBO J.	42(1)	e110518	2023	CBL7,CIPK07,CRT3,CBL8	OsCBL7,OsCIPK07, CIPK7, OsCIPK7, OsSnRK3.13, SnRK3.13,CRT2, OsCRT2, OsCRT3,OsCBL8
52518	35867472	Zhang Y., Gao H., Fang J., Wang H., Chen J., Li J., Dong L.	Up-regulation of bZIP88 transcription factor is involved in resistance to three different herbicides in both Echinochloa crus-galli and E. glabrescens.	J. Exp. Bot.	73(19)	6916-6930	2022		
52519	36351196	Ma W., Zhang C., Zhang W., Sheng P., Xu M., Ni Y., Chen M., Cheng B., Zhang X.	TMT-Based Comparative Peptidomics Analysis of Rice Seedlings under Salt Stress: An Accessible Method to Explore Plant Stress-Tolerance Processing.	J. Proteome Res.	21(12)	2905-2919	2022		
52520	36254112	Shi J., Zhao B., Jin R., Hou L., Zhang X., Dai H., Yu N., Wang E.	A phosphate starvation response-regulated receptor-like kinase, OsADK1, is required for mycorrhizal symbiosis and phosphate starvation responses.	New Phytol.	236(6)	2282-2293	2022		
52521	36407598	Liu S., Wang T., Meng G., Liu J., Lu D., Liu X., Zeng Y.	Cytological observation and transcriptome analysis reveal dynamic changes of <i>Rhizoctonia solani</i> colonization on leaf sheath and different genes recruited between the resistant and susceptible genotypes in rice.	Front Plant Sci	13	1055277	2022	XA21,XIK1,CIPK14,ACS2,PID2,RLCK5,PR1B	Xa21*, Xa21, OsXA21,OsXIK1,OsCIPK14, OsSnRK3.33, SnRK3.33,OsACS2, Os-ACS2,Pi-d2, Pi-d(t)2, PiD2(t), Pid2, PI-D2, Pi-d2(t), SDRLK-PID2, OsSDRLK-PID2,OsRLCK5,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1, OsPR1a, PR1a
52522	36426160	Xu T., Zhang J., Liu Y., Zhang Q., Li W., Zhang Y., Wu M., Chen T., Ding D., Wang W., Zhang Z.	Exon skipping in <i>IspE</i> Gene is associated with abnormal chloroplast development in rice <i>albino leaf 4</i> mutant.	Front Plant Sci	13	986678	2022	GRY340,HAP3A,HEMA,PETA,CAB1R,LHCB2.1,PSBO,NAD2,PSAD,RBCS3,PSBA,PSBP,NAD5,YGL10,PSAE	OsCMK, CMK, OsIspE, IspE, OsGRY340, AL4, OsAL4,OsHAP3A,OsNF-YB-2, NFYB2, NF-YB2,HEMA1, OsHEMA, GluTR, OsHEMA1, hemA,petA, Cytf, cytF, Cyt f, OsPETA,cab1R, LHCP, CAB, OsLhcb1, Lhcb1, Cab1, OsCAB1, Lhcb1b, OsLhcb1b, CAB2R,LHCB, LHCP II, Lhcb2, OsLhcb2, Lhcb2.1, OsLhcb2.1 ,PsbO, psbO, OsPSBO,nad2, OsNAD2,PsaD, OsPsaD,RbcS3, OsRBCS3, OsRbcS3, rbcS ,PsbA, psbA, OsPsbA, PSBD1, OsPSBD1, psbD1,PsbP, OsPsbP, psbP,nad5, OsNAD5,CAO, OsCAO, CAO1, OsCAO1, Oslls1, Lls1, DVR, PGL,PsaE, OsPsaE
52523	36345772	Sarkar D., Majumder S., Giri K., Sabnam N.	<i>In silico</i> characterization, molecular docking, and dynamic simulation of a novel fungal cell-death suppressing effector, MoRlpA as potential cathepsin B-like cysteine protease inhibitor during rice blast infection.	J. Biomol. Struct. Dyn.		1-18	2022		
52524	36430147	Zang Y., Yao Y., Xu Z., Wang B., Mao Y., Wang W., Zhang W., Zhang H., Liu L., Wang Z., Liang G., Yang J., Zhou Y., Gu J.	The Relationships among "STAY-GREEN" Trait, Post-Anthesis Assimilate Remobilization, and Grain Yield in Rice (<i>Oryza sativa</i> L.).	Int J Mol Sci	23(22)		2022	PSBD,NYC3,LHCA2,LHCA1	psbD, D2, OsPsbD1, OsPsbD2,nyc3, OsNYC3, PPH,lhcA, Lhca2, OsLhca2,OsLhca1, Lhca1
52525	36317370	Borah P., Sharma A., Sharma A.K., Khurana P., Khurana J.P.	SCF OsFBK1 E3 ligase mediates jasmonic acid induced turn-over of OsATL53 and OsCCR14 to regulate rice anther and root lignification.	J. Exp. Bot.			2022	RING94	OsRING94, OsATL53, ATL53
52526	36452104	Zhou H., Hu Z., Luo Y., Feng C., Long Y.	Multiple ALMT subunits combine to form functional anion channels: A case study for rice ALMT7.	Front Plant Sci	13	1012578	2022	PAAB1-1	OsALMT7, ALMT7
52527	36531377	Zheng W.J., Li W.Q., Peng Y., Shao Y., Tang L., Liu C.T., Zhang D., Zhang L.J., Li J.H., Luo W.Z., Yuan Z.C., Zhao B.R., Mao B.G.	E2Fs co-participate in cadmium stress response through activation of MSHs during the cell cycle.	Front Plant Sci	13	1068769	2022	MAD2,PIS1,MSH3,MSH2,MSH6,CDKB2;1 ,E2F4,ATR,E2F3,E2F2,DEL2,E2F1,MSH7,CDC2-2,CYCD5;1,DEL1	OsMAD2,Orysa;Rb2, RBR2, OsRBR1, RBR1, OsPIS1, RB2, OsRB2, RB1, OsRB1,OsMSH3,OsMSH2,OsMsh6, Msh6, OsMSH6,Orysa;CDKB2;1, OsCDKB2;1, cdc2Os3, Oscdc20s-3, cdc20s-3, Orysa;CDKB;2, CYCB2.1, CDKB-2, OsCDKB-2,Orysa;E2F4, OsE2F4,OsATR,Orysa;E2F3, OsE2F3, DLN111, OsDLN111,Orysa;E2F2, OsE2F2, DLN252, OsDLN252, OsE2Fa-2, E2Fa-2,Orysa;DEL2, OsDEL2,Orysa;E2F1, OsE2F1, DLN58, OsDLN58, OsE2Fa-1, E2Fa-1,OsMSH7,cdc2Os-2, CDC2Os-2, CDKA-2, CDKA;2, Orysa;CDKA;2, Rcdc2-2, OsCDKA;2, OsCDKA2, CDKA2, CDKA;1, OsCDKA;1, CDC20S-2, OsCDC20S-2,CycD5;1, CycD5;os;1, Orysa;CycD5;1, Orysa;CYCD5;1, OsCYCD5;2, CycD5;2,Orysa;DEL1, OsDEL1, OsE2Fe-1, E2Fe-1
52528	36450198	Tran A.D., Cho K., Han O.	Rice peroxygenase catalyzes lipoxygenase-dependent regiospecific epoxidation of lipid peroxides in the response to abiotic stressors.	Bioorg. Chem.	131	106285	2023	PXG9	OsPXG9
52529	36499063	Liu X., Yang Y., Hou S., Men Y., Han Y.	The Integration of Genome-Wide Association Study and Homology Analysis to Explore the Genomic Regions and Candidate Genes for Panicle-Related Traits in Foxtail Millet.	Int J Mol Sci	23(23)		2022		
52530	36430953	Mei E., Tang J., He M., Liu Z., Tian X., Bu Q.	OsMKKK70 Negatively Regulates cold tolerance at Booting Stage in Rice.	Int J Mol Sci	23(22)		2022	GA20OX3,WRKY53,MAP3K6,GAMYB,CYP703A3,SLR1,_,STE11,GA3OX1,GNP1	OsGA20ox3, ga20ox3,OsWRKY53, WRKY-53,OsMAP3K6, OsMKKK70, MKKK70,OsGAMYB, GAM1, OsGAMyb, Os-MYBGA, Os GAMYB, OsMYBGA, MYBGA, Os2R_MYB15, 2R_MYB15 ,OsCYP703A3,slr1-1, slr1, slr, GAI, OsGAI, OsSLR1, Os SLR1, OsRGA1, OsGRAS-18, OsGRAS-18, GRAS-18, GRAS18, SLR-1,OsNPK1-PK, NPK1-PK, OsMKKK62, MKKK62, OsMAPKKK62, MAPKKK62, MEK7, OsMEK7,OsSTE11, OsMKKK55, MKKK55,OsGA3ox1, GA3ox1, OsGA3OX1,GA20OX1, OsGA20ox1, 20ox1, GA20ox-1, ga20ox1, Os20ox, C20OX2, OsGA20ox2, OsGA20ox-1, GA20ox1, OsGNP1
52531	36445131	Shen Z.F., Li L., Wang J.Y., Zhang Y.R., Wang Z.H., Liang S., Zhu X.M., Lu J.P., Lin F.C., Liu X.H.	A Subunit of the COP9 Signalosome, MoCsn6, Is Involved in Fungal Development, Pathogenicity, and Autophagy in Rice Blast Fungus.	Microbiol Spectr	10(6)	e0202022	2022		
52532	36506305	Saleem B., Farooq U., Rehman O.U., Aqeel M., Farooq M.S., Naeem M.K., Inam S., Ajmal W., Rahim A.A., Chen M., Kalsoom R., Uzair M., Fiaz S., Attia K., Alafari H.A., Khan M.R., Yu G.	Genome-wide and molecular characterization of the <i>DNA replication helicase 2</i> (<i>DNA2</i>) gene family in rice under drought and salt stress.	Front Genet	13	1039548	2022	DNA2_9,DNA2_8,PLS2,DNA2_3,DNA2_12,DNA2_11,DNA2_15,DNA2_1,AQR,DNA2_4,DNA2_6,DNA2_14,DNA2_16,DNA2_5,DNA2_13,DNA2_17,DNA2_10	OsDNA2_9,OsDNA2_8,RBP-59, OsRBP-59, OsPLS2, HeFP, OsHeFP, OsDNA2_7, DNA2_7,OsDNA2_3,OsDNA2_12,OsDNA2_11,OsDNA2_15,OsDNA2_1,OsAQR, OsDNA2_2, DNA2_2,OsDNA2_4,OsDNA2_6,OsDNA2_14,OsDNA2_16,OsDNA2_5,OsDNA2_13,OsDNA2_17,OsDNA2_10
52533	36417515	Zhang Y., Tateishi-Karimata H., Endoh T., Jin Q., Li K., Fan X., Ma Y., Gao L., Lu H., Wang Z., Cho A.E., Yao X., Liu C., Sugimoto N., Guo S., Fu X., Shen Q., Xu G., Herrera-Estrella LR., Fan X.	High-temperature adaptation of an <i>OsNRT2.3</i> allele is thermoregulated by small RNAs.	Sci Adv	8(47)	eadc9785	2022	SNRT2.3-1,HTNE,SNRT2.3-2	sNRT2.3-1,NRT2.3, OsNRT2.3, OsNRT2;1, OsNRT2.3a, OsNRT2.3b, OsNRT2;3a, OsNRT2.5 ,sNRT2.3-2
52534	36430797	Mao L., Ge L., Ye X., Xu L., Si W., Ding T.	<i>ZmGLP1</i>, a Germin-like Protein from Maize, Plays an Important Role in the Regulation of Pathogen Resistance.	Int J Mol Sci	23(22)		2022		
52535	36432876	Lee S.K., Lee S.M., Kim M.H., Park S.K., Jung K.H.	Genome-Wide Analysis of Cyclic Nucleotide-Gated Channel Genes Related to pollen Development in Rice.	Plants (Basel)	11(22)		2022	CNGC14,CNGC12,CNGC2,CNGC11,CNGC4,CNGC17,CNGC6,CNGC5,CNGC16,CNGC3,CNGC8,CNGC7,CNGC9,CNGC10,CNGC1,CDS1,RUPO	OsCNGC14, OsCNGC3, CNGC3,OsCNGC12, OsCNGC2, CNGC2 ,OsCNGC2, OsCNGC1, CNGC1,OsCNGC11, OsCNGC13, CNGC13, SSS1-D ,OsCNGC4, OsCNGC12, CNGC12 ,OsCNGC17, OsCNGC5, CNGC5, OsSTA282,OsCNGC6, OsCNGC4, CNGC4, OsSTA107,OsCNGC5, OsCNGC10, CNGC10  ,OsCNGC16, OsCNGC8, CNGC8, OsSTA273,OsCNGC3, OsCNGC7, CNGC7 ,OsCNGC8, OsCNGC6, CNGC6, OsCNGC9,OsCNGC7, OsCNGC14, CNGC14 ,OsCNGC9, OsCNGC16, CNGC16,OsCNGC10, OsCNGC11, CNGC11,OsCNGC1, OsCNGC15, CNGC15,OsCNGC15, CNGC15, OsCNGC9, CNGC9, OsCDS1,OsRLCK193, RLCK193, OsCrRLK1L13, CrRLK1L13, OsMRLK40, MRLK40, FLR9, OsFLR9
52536	36556346	Zhang M., Lai L., Liu X., Liu J., Liu R., Wang Y., Liu J., Chen J.	Overexpression of Nitrate Transporter 1/Peptide Gene <i>OsNPF7.6</i> Increases Rice Yield and Nitrogen Use Efficiency.	Life (Basel)	12(12)		2022	NPF7.6	PTR, OsNPF7.6
52537	36507422	Shanks C.M., Huang J., Cheng C.Y., Shih H.S., Brooks M.D., Alvarez J.M., Araus V., Swift J., Henry A., Coruzzi G.M.	Validation of a high-confidence regulatory network for gene-to-NUE phenotype in field-grown rice.	Front Plant Sci	13	1006044	2022	HOX13,HOX22,BZIP23,_,LBD38,BHLH61	Oshox13, OsHox13, OsHDZ11, OsHDZIP11, HDZ11, HDZIP11,Oshox22, OsHox22, OsHDZ14, OsHDZIP14, HDZ14, HDZIP14,OsbZIP23, OsAREB1, OsABF2, Osbzip23, OsAREB2, OsZIP23, ZIP23,R2R3-MYB,OsLBD38, HINGE2, OsHINGE2, LOB39, OsLOB39,OsbHLH061, OsbHLH61, bHLH061, bHLH61
52538	36418747	Wang S.L., Zhang Z.H., Fan Y.Y., Huang D.R., Yang Y.L., Zhuang J.Y., Zhu Y.J.	Control of grain weight and Size in Rice (Oryza sativa L.) by OsPUB3 Encoding a U-box E3 Ubiquitin ligase.	Rice (N Y)	15(1)	58	2022	PUB3	OsPUB3, OsPUB03,  OsPUB3, PUB3
52539	36499202	Wang W., Shinwari K.I., Zhang H., Zhang H., Dong L., He F., Zheng L.	The bHLH Transcription Factor OsbHLH057 Regulates Iron Homeostasis in Rice.	Int J Mol Sci	23(23)		2022	NAS1,BHLH57,NAAT1,IRO2,NAS2,TOM1,YSL15	OsNAS1,OsbHLH057, bHLH057, OsbHLH57, bHLH57, OsPRI4, PRI4,OsNAAT1,OsIRO2, OsbHLH056, bHLH056, bHLH56, OsbHLH56,OsNAS2, OsNAS1,OsTOM1, ZIFL4, OsZIFL4 ,OsYSL15, OsYs7
52540	36531367	Li Y., Liu P., Mei L., Jiang G., Lv Q., Zhai W., Li C.	Knockout of a papain-like cysteine protease gene <i>OCP</i> enhances blast resistance in rice.	Front Plant Sci	13	1065253	2022	ABA8OX1,SNAP32,REM4.1,MP,ARF2,CDPK21,CDPK4,CDPK10,MODD,PIN1D,RACK1,FLS2,PITA,PAL1,PI21,PR1A,MSRMK2,CDPK20,ORYA,ERF77,GH3-2,RAU1,PIN1A,BZIP62	OsABA8OX1, CYP707A5, OsCYP707A5, ABA8ox1, OsABA8ox1, OsABA8'OH1, ABA8'OH1 ,OsSNAP32,OsREM4.1,OsMP, OsARF5, OsARF11, DLN125, OsDLN125, OsMP/OsARF11,OsARF2, OsARF4, ARF4,OsCDPK21, OsCPK21, CPK21, CPK-21,OsCDPK4, OsCPK4, CPK4, CDPK1,OsCDPK10, OsCPK10, CPK10,OsMODD ,OsPIN1D, OsPIN1d,RACK1A, RWD, OsWD40-21, OsRACK1, OsRACK1A,Os-FLS2, OsFLS2, OsCLV2f, CLV2f,Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30, Trx30,OsPAL, Pal1*, Pal1, PAL, Pal_1, PalI, PAL2, OsPAL01, PAL01, OSPAL, CP-1, GP-1, OsPAL1, PAL3, OsPAL3,pi21, rMg40, OsHMP26, HMP26, OsHIPP5, HIPP5, OsaHIP05, HIP05 ,OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1, OsPR1b, PR1alpha, OsPR1alpha,OsMSRMK2, OsMAPK5, OsMAP1, OsMPK3, OsBIMK1, OsMAPK2, MPK5, BIMK1, MAPK2, MAPK5, MPK3, OsMPK5, OsMAPK3, OsMAPK5b, MAPK3,OsCDPK20, OsCPK20, CPK20,ocp*, ocp, OsOCP, OsORYA,OsAP2-39, AP2-39, OsERF#077, OsERF077, OsERF77, AP2/EREBP#149, AP2/EREBP149, DLN121, OsDLN121,OsGH3-2, OsGH3.2, GH3.2,OsLAX1, OsRAU1, OsAUX1, LAX1, AUX1,PIN1C, OsPIN1C, OsPIN1c, OsPIN1a,OsbZIP62, OsABF8, OsEEL, EEL
52541	36319615	Chen Y., Xiang Z., Liu M., Wang S., Zhang L., Cai D., Huang Y., Mao D., Fu J., Chen L.	ABA biosynthesis gene OsNCED3 contributes to preharvest sprouting resistance and grain development in rice.	Plant Cell Environ.	46(4)	1384-1401	2023		
52542	36499068	Asif S., Jang Y.H., Kim E.G., Jan R., Asaf S., Aaqil Khan M., Farooq M., Lubna, Kim N., Lee I.J., Kim K.M.	The Role of Exogenous Gibberellic Acid and Methyl Jasmonate against White-Backed Planthopper (<i>Sogatella furcifera</i>) Stress in Rice (<i>Oryza sativa</i> L.).	Int J Mol Sci	23(23)		2022	POX22.3,GID2,RBBI3-3,SLR1	POX22.3, OSPER, OsPOX, POX, Pir3, prx111, POX22, OsPOX1, POX1, OsPOX22.3, OsPR9, PR9,gid2, GF14e, OsGF14e, OsGID2, 14-3-3e,RBBI3-3, OsBBPI, BBPI, IBP1.2, OsIBP1.2, OsBBTI5, BBTI5,slr1-1, slr1, slr, GAI, OsGAI, OsSLR1, Os SLR1, OsRGA1, OsGRAS-18, OsGRAS-18, GRAS-18, GRAS18, SLR-1
52543	36430644	Shang H., Li P., Zhang X., Xu X., Gong J., Yang S., He Y., Wu J.L.	The Gain-of-Function Mutation, <i>OsSPL26,</i> Positively Regulates Plant Immunity in Rice.	Int J Mol Sci	23(22)		2022	_	SPL26, OsSPL26, OsSpl26
52544	36423447	Thanabut S., Sornplerng P., Buaboocha T.	Ectopic expression of rice malate synthase in Arabidopsis revealed its roles in salt stress responses.	J. Plant Physiol.	280	153863	2023		
52545	36322735	Niu Y., Bai J., Liu X., Zhang H., Bao J., Zhao W., Hou Y., Deng X., Yang C., Guo L., Geng Z., Xie H., Wu H., Shen M., Lou X., Tang W., Liu X., Sun D., Cao X., Zheng S.	HISTONE DEACETYLASE 9 transduces heat signal in plant cells.	Proc. Natl. Acad. Sci. U.S.A.	119(45)	e2206846119	2022	DSL1	OsDSL1, OsHDA711, HDA711, OsHDA9, HDA9
52546	36472959	Deng P., Jing W., Cao C., Sun M., Chi W., Zhao S., Dai J., Shi X., Wu Q., Zhang B., Jin Z., Guo C., Tian Q., Shen L., Yu J., Jiang L., Wang C., Chin J.H., Yuan J., Zhang Q., Zhang W.	Transcriptional repressor RST1 controls salt tolerance and grain yield in rice by regulating gene expression of asparagine synthetase.	Proc. Natl. Acad. Sci. U.S.A.	119(50)	e2210338119	2022	NIR2,GLT2,RST1,ASN1,NRT2.2	OsNiR2, NiR2,OsGLT2, OsNADH-GOGAT2, NADH-GOGAT2, OsGOGAT2, GOGAT2, OsGLU2, GLU2,OsARF10, ARF10, OsARF18, ARF18, OsRST1, GLR1, OsGLR1,OsASN1, OsAS1, AS1,OsNRT2.2, OsNRT2.1
52547	36471073	Xu F., Tang J., Wang S., Cheng X., Wang H., Ou S., Gao S., Li B., Qian Y., Gao C., Chu C.	Antagonistic control of seed dormancy in rice by two bHLH transcription factors.	Nat. Genet.	54(12)	1972-1982	2022	ICE2,SD6,BHLH48,NCED2,ABA8OX3	OsbHLH001, bHLH001, OsbHLH1, bHLH1, OsICE2,OsbHLH108, OsbHLH108/SPT, bHLH108, SPT, OsSPT, OsSD6,OsbHLH048, bHLH048, bHLH48,OsNCED2, OsNced2, OsCCD4b, CCD4b, OsCCD4c, CCD4c,OsABA8OX3, OsABA8ox3, CYP707A7, OsCYP707A7, OsAba-ox3, OsABA8ox3, OsABA8'ox3, ABA8'ox3, OsABAX3, ABAX3, OsABA8'OH3, ABA8'OH3
52548	36454752	Xie Y., Zhu Y., Wang N., Luo M., Ota T., Guo R., Takahashi I., Yu Z., Aizezi Y., Zhang L., Yan Y., Zhang Y., Bao H., Wang Y., Zhu Z., Huang A.C., Zhao Y., Asami T., Huang H., Guo H., Jiang K.	Chemical genetic screening identifies nalacin as an inhibitor of GH3 amido synthetase for auxin conjugation.	Proc. Natl. Acad. Sci. U.S.A.	119(49)	e2209256119	2022		
52549	36555723	Li Z., Rao M.J., Li J., Wang Y., Chen P., Yu H., Ma C., Wang L.	CRISPR/Cas9 Mutant Rice <i>OsPMEI12</i> Involved in Growth, Cell Wall Development, and Response to Phytohormone and Heavy Metal Stress.	Int J Mol Sci	23(24)		2022	PMEI12	OsPMEI12
52550	36528794	Jin J., Xiong L., Gray J.E., Hu B., Chu C.	Two awn-development-related peptides, GAD1 and OsEPFL2, promote seed dispersal and germination in rice.	Mol Plant	16(3)	485-488	2023		
52551	36462682	Ma F., Li Z., Wang S., Li K., Tang F., Jia J., Zhao Q., Jing P., Yang W., Hua C., Han H., Xu J., Sun R., Zhang J., Han R., Liu X., Fan S., Gu L., Xu K., Li L.	The F-box protein OsEBF2 confers the resistance to the brown planthopper (Nilparvata lugens St&#xe5;l).	Plant Sci.	327	111547	2023		
52552	36404527	Sharma E., Bhatnagar A., Bhaskar A., Majee S.M., Kieffer M., Kepinski S., Khurana P., Khurana J.P.	Stress-induced F-Box protein-coding gene OsFBX257 modulates drought stress adaptations and ABA responses in rice.	Plant Cell Environ.	46(4)	1207-1231	2023		
52553	36613553	Sun Y., Qin Q., Song K., Sun L., Jiang T., Yang S., Li Z., Xu G., Sun S., Xue Y.	Does Sulfoquinovosyl Diacylglycerol Synthase OsSQD1 Affect the Composition of Lipids in Rice Phosphate-Deprived Root?	Int J Mol Sci	24(1)		2022	DGD2A,NPC3,NPC1,DGD1A,SQD2.1,DGD1B,SQD1	OsDGD2alpha DGD2alpha, OsDGD2A, OsDGD1, DGD1,OsNPC4, OsNPC3, NPC4,OsNPC1,OsDGD1alpha, DGD1alpha, OsDGD1A,OsSQD2.1,OsDGD1beta, DGD1beta, OsDGD1B, OsDGD5, DGD5,OsSQD1
52554	36582638	Yu T., Cen Q., Kang L., Mou W., Zhang X., Fang Y., Zhang X., Tian Q., Xue D.	Identification and expression pattern analysis of the <i>OsSnRK2</i> gene family in rice.	Front Plant Sci	13	1088281	2022	SAPK7,SAPK9,SAPK6,SAPK1,SAPK2,SAPK8,SAPK3,SAPK4,SAPK5,SAPK10	OsSAPK7, OsSnRK2.7, SnRK2.7,OsSAPK9, OsSnRK2.9, SnRK2.9,OsSAPK6, OSRK1, OsSnRK2.6, SnRK2.6,OsSAPK1, OsSnRK2.1, SnRK2.1,OsSAPK2, OsSnRK2.2, SnRK2.2,OsSAPK8, OsSnRK2.8, SnRK2.8,OsSAPK3, REK, OsSnRK2.3, SnRK2.3,OsSAPK4, OsSnRK2.4, SnRK2.4,OsSAPK5, OsSnRK2.5, SnRK2.5,OsSAPK10, OsSnRK2.10, SnRK2.10
52555	36580705	Xia K., Pan X., Chen H., Xu X., Zhang M.	Rice miR168a-5p regulates seed length, nitrogen allocation and salt tolerance by targeting OsOFP3, OsNPF2.4 and OsAGO1a, respectively.	J. Plant Physiol.	280	153905	2023		
52556	36544870	Li Z., Gui R., Yu X., Liang C., Cui J., Zhao X., Zhang X., Yu P., Chen W., Sun J.	Genetic basis of the early heading of high-latitude weedy rice.	Front Plant Sci	13	1059197	2022	HD16,SE1,DTH2,HD2	Hd16, EL1, CK1, Hd16/CKI, Hd16/EL1,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, OsHd1,  Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,OsBBX19, BBX19, OsM, OsDTH2, qDTH-2, OsCCT22, CCT22,Hd2(t), Hd2, qHD2(t), OsPRR37, Os-PRR37, PRR37, Prr4, OsPRR4, DTH7, Os DTH7, OsCCT28, CCT28, Ghd7.1, PRR37/Hd2, EH7-2, EH7-2/Hd2, Hd2/PRR37, PRR37-1a, PRR37-1b, PRR37-1c, PRR37-2a, PRR37- 2, HD7.2
52557	36515165	Ma Y., Dong J., Yang W., Chen L., Wu W., Li W., Zhou L., Wang J., Chen J., Yang T., Zhang S., Zhao J., Liu B.	OsFLZ2 interacts with OsMADS51 to fine-tune rice flowering time.	Development	149(24)		2022		
52558	36547098	Shi Y., Zeng W., Xu M., Li H., Zhang F., Chen Z., Anicet G., Huang S., Huang Y., Wang X., Li J., Zhang X., Zheng Y., Rehman S.	Comprehensive Analysis of Glutamate Receptor-like Genes in Rice (<i>Oryza sativa</i> L.): Genome-Wide Identification, Characteristics, Evolution, Chromatin Accessibility, gcHap Diversity, Population Variation and Expression Analysis.	Curr Issues Mol Biol	44(12)	6404-6427	2022	GLR4.5,GLR1.1,GLR3.4,GLR3.6,GLR4.3,GLR2.2,GLR2.3,_,GLR4.2,GLR4.4,GLR3.5,GLR3.1,GLR4.7,GLR9.2,GLR4.6,GLR2.1,GLR3.3,GLR1.2,GLR3.7,GLR1.3,GLR4.9,GLR4.8,GLR2.4,GLR9.1,GLR3.8,GLR4.1	OsGLR4.5, OsGLR6.6, GLR6.6,OsGLR1.1, OsGLR1.2, GLR1.2, OsGLR9.8, GLR9.8,OsGLR3.4, OsGLR6.11, GLR6.11,OsGLR3.6, OsGLR3.4, GLR3.4, OsGLR7.1, GLR7.1,OsGLR4.3, OsGLR6.4, GLR6.4,OsGLR2.2, OsGLR2.1, GLR2.1, OsGLR9.4, GLR9.4,OsGLR2.3, OsGLR9.5, GLR9.5,OsGLR3.1, GLR3.1, OsGLR3.2, GLR3.2, OsGLR2.1, GLR2.1,OsGLR4.2, OsGLR6.3, GLR6.3 ,OsGLR4.4, OsGLR6.5, GLR6.5,OsGLR3.5, OsGLR3.3, GLR3.3, OsGLR6.12, GLR6.12,OsGLR3.2, GLR3.2, OsGLR3.1, OsGLR4.1, GLR4.1,OsGLR4.7,OsGLR6.8, GLR6.8,OsGLR9.2,OsGLR4.6, OsGLR6.7, GLR6.7,OsGLR2.1, OsGLR2.2, GLR2.2, OsGLR9.3, GLR9.3,OsGLR3.3, OsGLR3.5, GLR3.5, OsGLR6.1, GLR6.1,OsGLR1.2, OsGLR1.4, GLR1.4, OsGLR2.2, GLR2.2,OsGLR3.7, OsGLR7.2, GLR7.2,OsGLR1.3, OsGLR1.1, GLR1.1, OsGLR9.7, GLR9.7,OsGLR4.9, OsGLR1.3, GLR1.3, OsGLR6.10, GLR6.10,OsGLR4.8, OsGLR6.9, GLR6.9,OsGLR2.4, OsGLR9.6, GLR9.6,OsGLR9.1,OsGLR3.8, OsGLR9.9, GLR9.9,OsGLR4.1, OsGLR6.2, GLR6.2
52559	36566672	Han S., Liu Y., Bao A., Zeng H., Huang G., Geng M., Zhang C., Zhang Q., Lu J., Wu M., Guo L.	OsCSN1 regulates the growth of rice seedlings through the GA signaling pathway in blue light.	J. Plant Physiol.	280	153904	2023	PPS,SLR1,CRY1A,CRY2,CSN1,CUL4,CSN2	OsWD40-55, OsCOP1, COP1, YEL, OsYEL, OsPPS, COP1-1, OsCOP1-1,  OsRING347, RING347,slr1-1, slr1, slr, GAI, OsGAI, OsSLR1, Os SLR1, OsRGA1, OsGRAS-18, OsGRAS-18, GRAS-18, GRAS18, SLR-1,OsCRY1a, OsCRY1, CRY1a, CRY2, OsCCT1a, CCT1a,OsCRY2,OsCSN1,OsCUL4,OsCSN2
52560	36540024	Shi Y., Zhang Y., Sun Y., Xie Z., Luo Y., Long Q., Feng J., Liu X., Wang B., He D., Ren J., Guo P., Xing J., He L., Fernie A.R., Chen W., Liu X., Luo Y., Jin C., Luo J.	Natural variations of OsAUX5, a target gene of OsWRKY78, control the neutral essential amino acid content in rice grains.	Mol Plant	16(2)	322-336	2023		
52561	36675822	Biregeya J., Anjago W.M., Pan S., Zhang R., Yang Z., Chen M., Felix A., Xu H., Lin Y., Nkurikiyimfura O., Abubakar Y.S., Wang Z., Tang W.	Type 2C Protein Phosphatases <i>MoPtc5</i> and <i>MoPtc7</i> Are Crucial for Multiple Stress Tolerance, Conidiogenesis and Pathogenesis of <i>Magnaporthe oryzae</i>.	J Fungi (Basel)	9(1)		2022		
52562	36513418	Ali A., Wu T., Zhang H., Xu P., Zafar S.A., Liao Y., Chen X., Zhou H., Liu Y., Wang W., Wu X.	A putative SUBTILISIN-LIKE SERINE PROTEASE 1 (SUBSrP1) regulates anther cuticle biosynthesis and panicle development in rice.	Journal of Advanced Research	42	273-287	2022	APA1331,CYP86A7-2,WDA1,_,_,_,NOE1,CATB,FAR8,CATA,GL1-6,PXG9,_	SUBSrP1, OsSUBSrP1, OsAPA1331,CYP86A7-2, OsCYP86A7-2,OsWDA1, Wda1, wda1, OS-CER1, OsGL1-5,,,,CATC, OsCat, OsCatC, OsCATC, OsNOE1, noe1, catC, OsCATC, CAT3, OsCAT3, LLM9428, OsLLM9428,CatB, CAT-B, OsCatB, OsCATB, OsCAT1B, CAT1B, CAT2, OsCAT2,OsFAR8,CATA1, Cat A1*, OSCAT-A, Cat2, CatA1, CAT-A, OsCatA, OsCAT, CAT, catA, OSCATA, OsCATc, OsCATA, OsCAT1A, CAT1, OsCAT1, OsCATC, OsCAT2,Os0053, OsGL1-6,OsPXG9,
52563	36440499	Wang K., Li S., Chen L., Tian H., Chen C., Fu Y., Du H., Hu Z., Li R., Du Y., Li J., Zhao Q., Du C.	E3 ubiquitin ligase OsPIE3 destabilises the B-lectin receptor-like kinase PID2 to control blast disease resistance in rice.	New Phytol.	237(5)	1826-1842	2023		
52564	36499722	Khan I., Jan R., Asaf S., Khan A.L., Bilal S., Kim K.M., Al-Harrasi A.	Genome and Transcriptome-Wide Analysis of <i>OsWRKY</i> and <i>OsNAC</i> Gene Families in <i>Oryza sativa</i> and Their Response to White-Backed Planthopper Infestation.	Int J Mol Sci	23(23)		2022	NAC12,NAC59,WRKY50,WRKY62,WRKY48,NAC6,WRKY71,WRKY60,NAC83,WRKY79,NAC3,NAC4,NAC63,WRKY28,WRKY22,NAC134,NAC31,WRKY84,WRKY104,WRKY32,WRKY69,WRKY80,NAC140,WRKY75,NAC16,WRKY72,WRKY52	ONAC012, ONAC12,ONAC059, ONAC59,OsWRKY50,OsWRKY62, OsWRKY62.1, OsWRKY62.2, XB10, OsWRKY62-1, OsWRKY62-2,OsWRKY48,ONAC006, ONAC6, DLN95, OsDLN95,OsWRKY71, WRKY-71,OsWRKY60,ONAC083, ONAC83,OsWRKY79, WRKY-79,OsNAC3, NAC67, ONAC067, OnNAC3*, OsNAC3/ONAC067, DLN180, OsDLN180,OsNAC4, NAC68, ONAC068, OnNAC4*, OnNAC4, OsNAC4/ONAC068,ONAC063, ONAC63,OsWRKY28, DLN170, OsDLN170,OsWRKY22,ONAC134,ONAC031, ONAC31, OsSWN3,OsWRKY84,OsWRKY104, CRPG32, OsCRPG32,OsWRKY32,OsWRKY69,OsWRKY80,ONAC140,OsWRKY75,ONAC016, ONAC16, OsNAC016, OsNAC16,OsWRKY72, WRKY-72,OsWRKY52
52565	36529786	Nguyen T.T., Dwiyanti M.S., Sakaguchi S., Koide Y., Le D.V., Watanabe T., Kishima Y.	Identification of a Saltol-Independent Salinity Tolerance Polymorphism in Rice Mekong Delta Landraces and Characterization of a Promising Line, Doc Phung.	Rice (N Y)	15(1)	65	2022	PLGG1	OsPLGG1, OsPLGG1a, PLGG1a
52566	36555524	Li H., Li C., Liu X., Yang Z.	A Golgi-Located Transmembrane Nine Protein Gene TMN11 Functions in Manganese/Cadmium Homeostasis and Regulates Growth and Seed Development in Rice.	Int J Mol Sci	23(24)		2022	TMN11	OsTMN11, TM9-11, OsTM9-11
52567	36589128	Zeng Y., Wen J., Fu J., Geng H., Dan Z., Zhao W., Xu W., Huang W.	Genome-wide identification and comprehensive analysis of tubby-like protein gene family in multiple crops.	Front Plant Sci	13	1093944	2022	TLP1,TLP2,OSK20,TLP12,TLP10,TLP6,TLP9,TLP14,TLP11,TLP3,TLP5,TLP8,TLP7	OsTLP9, TLP9, OsTLP9a, OsTLP9b, OsTLP9c, OsTLP1, OsFbox034, OsFbox34, Os_F0675,  OsFBT1, FBT1,OsTLP12, OsTLP2, OsFbox039, OsFbox39, Os_F0683,  OsFBT2, FBT2,SKP20, OsSKP20,OsTLP2, OsTLP2a, OsTLP2b, OsTLP12, OsFbox402, Os_F0479,  OsFBT12, FBT12,OsTLP11, TLP11, OsTLP10, OsFbox278, Os_F0631,  OsFBT10, FBT10,OsTLP14, TLP14, OsTLP6, OsFbox139, Os_F0681,  OsFBT5, FBT5,OsTLP10, TLP10, OsTLP10a, OsTLP10b, OsTLP9, OsFbox267, Os_F0560,  OsFBT9, FBT9,OsTLP4, TLP4, OsTLP14, OsFbox645, Os_F0315,  OsFBT14, FBT14,OsTLP7, TLP7, OsTLP11, OsFbox398, Os_F0421,  OsFBT11, FBT11,OsTLP5, TLP5, OsTLP3, OsFbox050, OsFbox50, Os_F0396,  OsFBT3, FBT3,OsTLP8, LP8, OsTLP8a, OsTLP8b, OsTLP8c, OsTLP8d, OsTLP5, OsFbox107, Os_F0446,  OsFBT4, FBT4,OsTLP1, OsTLP1a, OsTLP1b, OsTLP1c, OsTLP8, OsFbox259, Os_F0415,  OsFBT7, FBT7,OsTLP3, TLP3, OsTLP7, OsFbox240, Os_F0401,  OsFBT6, FBT6
52568	36570941	Liu Y., Zhang W., Wang Y., Xie L., Zhang Q., Zhang J., Li W., Wu M., Cui J., Wang W., Zhang Z.	<i>Nudix hydrolase 14</i> influences plant development and grain chalkiness in rice.	Front Plant Sci	13	1054917	2022	_,CAD6,C3H1,PAL,ROMT9,GH2,PAL1,4CL3,_,NUDX7	OsPAL04, PAL04, PAL, OsPAL7, PAL7,OsCAD6,OsC3H1, OsC3'H, C3'H, OsCYP71P5, CYP71P5,OsPAL, OsPAL08, PAL2, GP-28, GP28, PAL08, OsPAL2, OsPAL8, PAL8,COMT, OsCOMT, ROMT-9, OsCOMT1, OsCAldOMT1, CAldOMT1, OsOMT, OsCOMT15, COMT15,gh2, CAD2, CAD, OsCAD2, OsGH2 ,OsPAL, Pal1*, Pal1, PAL, Pal_1, PalI, PAL2, OsPAL01, PAL01, OSPAL, CP-1, GP-1, OsPAL1, PAL3, OsPAL3,Os4CL3, Os4CL2, Os4CL, 4CL2, 4CL,OsF5H1, F5H1, OsCAld5H1, CAld5H1, CYP84A5, OsCYP84A5,OsNUDX7, OsNUDX14, NUDX14
52569	36574073	Zhu F., Wang K., Li D., Liu Z., Li M., Wang Z., Li X., Lan X., Guan Q.	OsSAP6 Positively Regulates Soda Saline-Alkaline Stress Tolerance in Rice.	Rice (N Y)	15(1)	69	2022	_,SAP6,SAP4,ZFP177,SAP8,PK3,SOD4,APX2	OsCatC, CatC, OsCAT, OsCAT1, CAT1,OsSAP6,OsSAP4,OsSAP9, SAP9, ZFP33,Osi-SAP8, OsiSAP8, OsSAP8, OsSAP1, SAP1,OsPK3, OsPK5, PK5,OsSOD4, OsCSD4, OsCu/Zn-SOD1, Cu/Zn-SOD1, OsCSD2, CSD2, OsSOD4-Cu/Zn, SOD4-Cu/Zn, Cu/ZnSOD3, CuZnSOD3, sodCp, OssodCp, OsCu/ZnSOD3, CuZnSOD2, OsSOD1,OsAPX2, OsAPx02, APXb, OsAPx2, OSAPX2, APx2, cAPX, OsAPX1, APX1
52570	36547620	Anjago W.M., Biregeya J., Shi M., Chen Y., Wang Y., Wang Z., Hong Y., Chen M.	The Calcium Chloride Responsive Type 2C Protein Phosphatases Play Synergistic Roles in Regulating MAPK Pathways in <i>Magnaporthe oryzae</i>.	J Fungi (Basel)	8(12)		2022		
52571	36349953	Liu Y., Li M., Yu J., Ma A., Wang J., Yun D.J., Xu Z.Y.	Plasma membrane-localized Hsp40/DNAJ chaperone protein facilitates OsSUVH7-OsBAG4-OsMYB106 transcriptional complex formation for OsHKT1;5 activation.	J Integr Plant Biol	65(1)	265-279	2023		
52572	36616184	Kim H.K., Kim J.Y., Kim J.H., Go J.Y., Jung Y.S., Lee H.J., Ahn M.J., Yu J., Bae S., Kim H.S., Kwak S.S., Kim M.S., Cho Y.G., Jung Y.J., Kang K.K.	Biochemical Characterization of Orange-Colored Rice Calli Induced by Target Mutagenesis of <i>OsOr</i> Gene.	Plants (Basel)	12(1)		2022	PSY3,OR,LCYB,LYCE,PSY2,PDA,NCED1,CCD1,ZDS,NCED2	OsPSY, PSY, OsPSY3,Osor,OsLCYbeta, OsLYCb, OsLCY, beta-OsLCY, beta-LCY,OsLCYe, OsLCYepsilon, LCYepsilon, epsilon-LCY, OsLYCE,OsPSY2,PDS1, PDS, OsPDS, Pds, OsPDA,OsNCED1, OsCCD4a, CCD4a,OsCCD1,OsZDS,OsNCED2, OsNced2, OsCCD4b, CCD4b, OsCCD4c, CCD4c
52573	36463341	Lu K., Li C., Guan J., Liang W.H., Chen T., Zhao Q.Y., Zhu Z., Yao S., He L., Wei X.D., Zhao L., Zhou L.H., Zhao C.F., Wang C.L., Zhang Y.D.	The PPR-Domain Protein SOAR1 Regulates salt tolerance in Rice.	Rice (N Y)	15(1)	62	2022	_,_,SOAR1,PLS11,_,_	,PPR,OsSOAR1,OsPLS11,,
52574	36494064	Jie Chen Z., Yan Zhai X., Liu J., Zhang N., Yang H.	Detoxification and catabolism of mesotrione and fomesafen facilitated by a Phase II reaction acetyltransferase in rice.	Journal of Advanced Research			2022		
52575	36600916	Yang X., Xie H., Weng Q., Liang K., Zheng X., Guo Y., Sun X.	Rice OsCASP1 orchestrates Casparian strip formation and suberin deposition in small lateral roots to maintain nutrient homeostasis.	Front Plant Sci	13	1007300	2022	_,FAR8,2R_MYB80,CASP3,CASP4,CASP5,CASP2,2R_MYB64,LOTR1,CASP1,PRX32	OsMyb7, Myb7, OsMYB102, MYB102, Os2R_MYB71, 2R_MYB71,OsFAR8,Os2R_MYB80,OsCASP3,OsCASP4,OsCASP5,OsCASP2,Os2R_MYB64,OsLOTR1,OsCASP1,prx32, OsPRX32, OsPER64, PER64
52576	36576552	Zhang Q., Chen C., Wang Y., He M., Li Z., Shen L., Li Q., Zhu L., Ren D., Hu J., Gao Z., Zhang G., Qian Q.	OsPPR11 encoding P-type PPR protein that affects group II intron splicing and chloroplast development.	Plant Cell Rep.	42(2)	421-431	2023	CAF2,PPR11	OsCAF2,OsPPR11
52577	36514007	Kamara N., Lu Z., Jiao Y., Zhu L., Wu J., Chen Z., Wang L., Liu X., Shahid M.Q.	An uncharacterized protein NY1 targets EAT1 to regulate anther tapetum development in polyploid rice.	BMC Plant Biol.	22(1)	582	2022	SUT1,AGO2,LAP6,RSUS3,ABCG26,CYP704B2,PKS10,DCM1,PTC1,SMC1,MS2,RAD21-4,EAT1,DFR2 ,SHOC1,NY1,HXK9,RSUS2,CYP703A3,HXK7,SMC6	OsSUT1, OsSUT2,OsAGO2,OsPKS1, PKS1, YY2, OsPKS21, PKS21, OsLAP6/OsPKS1, OsLAP6, OsCHS22, CHS22,RSus3(t), SUS3, SS3, OsScS3, RSs3, RSus3, OsSUS3, RSS3, OsEnS-111, Susy3, OsSusy3,OsABCG26,OsCYP704B2,OsPKS10, OsPKS2, PKS2, OsCHS10, CHS10,OsDCM1, SAW1, OsSAW1,OsMS1, tms9-1, OsPTC1, MS1, TMS9-1, OsTMS9-1,OsSMC1,OsMS2, OsDPW, DPW, DPW1, OsDPW1, OsFAR2, FAR2,OsRad21-4, REC8, OsREC8, OsRAD21-4,OsEAT1, OsbHLH141, EAT1/DTD1, bHLH141, DTD1, DTD, DLN120, OsDLN120,OsTKPR1, TKPR1, OsDFR2, OS-DFR2, OsDFR2A, DFR2A, OsCCRL1, CCRL1,OsSHOC1,OsNY1, OsMAIL1, MAIL1,OsHXK9,sus2, RSus2(t), SUS2, SS1, OsScS1, RSs1, RSus2, OsSUS2, RSS1, RSus1, OsSusy2, Susy2, OsRSUS1, RSUS1,OsCYP703A3,OsHXK7, OsHXK8,OsSMC6, SMC6a, OsSMC6a
52578	36616196	Esch L., Kirsch C., Vogel L., Kelm J., Huwa N., Schmitz M., Classen T., Schaffrath U.	Pathogen Resistance Depending on Jacalin-Dirigent Chimeric Proteins Is Common among Poaceae but Absent in the Dicot Arabidopsis as Evidenced by Analysis of Homologous Single-Domain Proteins.	Plants (Basel)	12(1)		2022	JAC1	OsJAC1, DIR54, OsDIR54, OsjDIR54, OsJRL29, JRL29
52579	36499684	Dong N., Chen L., Ahmad S., Cai Y., Duan Y., Li X., Liu Y., Jiao G., Xie L., Hu S., Sheng Z., Shao G., Wang L., Tang S., Wei X., Hu P.	Genome-Wide Analysis and Functional Characterization of Pyruvate Kinase (PK) Gene Family Modulating Rice Yield and Quality.	Int J Mol Sci	23(23)		2022	PK6,PK5,PK7,PK4,PKPA1,PK1,PK3,_,PK8,PKPBETA2	OsPK6,OsPK5, OsPK10, PK10,OsPK7,OsPK4,OsPKpa1, OsPK2, PK2,OsPK1,OsPK3, OsPK5, PK5,PK, OsPK5, PK5,OsPK8,OsPKpb2, PKpb2, OsPKpbeta2, PKpbeta2, OsPK9, PK9
52580	36552339	Wang B., Wang Y., Yu W., Wang L., Lan Q., Wang Y., Chen C., Zhang Y.	Knocking Out the Transcription Factor OsNAC092 Promoted Rice drought tolerance.	Biology (Basel)	11(12)		2022	PIP2;6,ETR2,ARF14,IAA30,Y37,CAB2R,LHCA5,POXA,IAA12,LHCB1.1,CP26,SAPK10,MAPK2,_,ABI1,ARF3,IAA23,IAA16,PSAO,LHCA2,IAA4,IAA2,CP29,ETT1,YGL9,PIP2;2,G1L2,SAPK3,IAA8,SAPK4	OsPIP2;6, PIP2-6, OsPIP2-6, PIP2-5, OsPIP2-5,etr2, OsPK1, PK1, ERL1, OsETR2, OsERL1, OS-ETR2, OsERS3,OsARF14, OsETT4, ETT4, DLN153, OsDLN153, OsARF3la, ARF3la,OsIAA30,NAC11, ONAC011, ONAC11, OMTN4, OsY37, OsY37N, OsY37I, OsNAC1, DLN172, OsDLN172, OsNAC092, NAC092, OsNAC92, NAC92,Oscab2R, CAB-2, OsLhcp, Lhcb1, Lhcb1a, OsLhcb1, OsLhcb1a ,OsLhca5,poxA, prx126, OsPrx126, prxRPA, RPA,OsIAA12,Lhcb1.1 OsLhcb1.1, lhcB,ASCAB9-A, OsCP26, Lhcb5, LHCB5, OsLHCB5,OsSAPK10, OsSnRK2.10, SnRK2.10,OsMAPK2, MPK2, OsMPK2,GAPDH,OsPP2C51, PP2C51, OsPP79, PP79, OsABI1,OsARF3, ETT3, Os ETT3, OsETT3, DLN20, OsDLN20, ARF4, OsARF3lb, ARF3lb,OsIAA23,OsIAA16, DLN134, OsDLN134,OsPSAO, PsaO,lhcA, Lhca2, OsLhca2,OsIAA4, IAA20, OsIAA20,OsIAA2,OsCP29, LHCB4, Lhcb4, OsLHCB4,OsARF15, ARF15, OsETT1, ARF3b, OsARF3b, OsARF3-1, ARF3-1, OsARF3, ARF3, DLN154, OsDLN154,OscpSRP43, cpSRP43, PGL3, OsPGL3, Os YGL9,OsPIP2;2, PIP2-2, OsPIP2-3,OsG1L2,OsSAPK3, REK, OsSnRK2.3, SnRK2.3,OsIAA8,OsSAPK4, OsSnRK2.4, SnRK2.4
52581	36619990	Patel A., Sahu K.P., Mehta S., Balamurugan A., Kumar M., Sheoran N., Kumar S., Krishnappa C., Ashajyothi M., Kundu A., Goyal T., Narayanasamy P., Kumar A.	Rice leaf endophytic <i>Microbacterium testaceum</i>: Antifungal actinobacterium confers immunocompetence against rice blast disease.	Front Microbiol	13	1035602	2022	CERK1,CEBIP,PAD4,NH2,EDS1	OsCERK1, OsLysM-RLK9, Os-CERK1, Os-LysM-RLK9, OsLysMRLK9, OsCERK1/OsLYK9, OsLYK9, LYK9,CEBiP, Os-LYP1, LYP1, OsCEBiP,OsPAD4,OsNH2, OsNPR2, NPR2, OsNPR2/NH2, DLN21, OsDLN21, PR2, OsNPR1, NPR1,  OsBTBA2, BTBA2, OsNPR3, NPR3,OsEDS1
52582	36464674	Zhang S., Hu X., Dong J., Du M., Song J., Xu S., Zhao C.	Identification, evolution, and expression analysis of OsBSK gene family in Oryza sativa Japonica.	BMC Plant Biol.	22(1)	565	2022	BRL1,RLCK119,RLCK197,RLCK98,RLCK308,D61,RLCK173,RLCK304,BRL3	OsBRL1,OsRLCK119, OsBSK4, BSK4,OsPUB70, PUB70, OsRLCK197, UCIP19, OsUCIP19,  OsPUB70, PUB70, OsBSK5, BSK5,OsRLCK98, OsBSK1, BSK1, OsBSK1-1, BSK1-1,OsRLCK308, OsBSK2, BSK2,d61*, dwf42, d61, OsBRI1, OSBRI1, BRI1, Os BRI1, Osbri1, OsBRKq1, BRKq1,OsRLCK173, OsBSK3, BSK3,OsRLCK304, OsBSK1-2, BSK1-2, OsBSK1,OsBRL3
52583	36537359	Wang Z., Zhou Y., Ren X.Y., Wei K., Fan X.L., Huang L.C., Zhao D.S., Zhang L., Zhang C.Q., Liu Q.Q., Li Q.F.	Co-Overexpression of Two Key Source Genes, <i>OsBMY4</i> and <i>OsISA3</i>, Improves Multiple Key Traits of Rice Seeds.	J. Agric. Food Chem.	71(1)	615-625	2023		
52584	36618614	Um T.Y., Hong S.Y., Han J.S., Jung K.H., Moon S., Choi B.S., Basnet P., Chung Y.S., Lee S.W., Yang W.T., Kim D.H.	<i>Gibberellic acid sensitive dwarf</i> encodes an ARPC2 subunit that mediates gibberellic acid biosynthesis, effects to grain yield in rice.	Front Plant Sci	13	1027688	2022	AP2/EREBP129,NCED1,LSC6,GA2OX1,GH3-9,GASD,KS8,GRX4,KAO,GNP1,CCR5	AP2/EREBP#129, OsRAV2, RAV2, OsRAV9/OsTEM1, OsRAV9/OsTEM1, OsRAV9, OsTEM1, RAV9, TEM1,OSNCED1, OsNCED-1, OsNCED3, OsNced3, NCED3, OsNCED9, NCED9,UGT, OsUFGT/Os3GT, OsUF3GT, OsUFGT, UFGT, OsLSC6, UF3GT,OsGA2ox1, ga2ox-1, OsGA2ox-1, ga2ox, ga2ox 1, GA2ox1,OsGH3-9,OsGASD, ARPC2B, OsARPC2B,OsKS8, KS8, KSL8, OsKSL8, DTC2, OsDTC2, OsDTC2/OsKS8, OsTPS32, TPS17, OsTPS17, KSL11, OsKSL11,OsGRX4, OsGrx_C7, Grx_C7,OsKAO, kao, CYP88A5, OSKAO, Os KAO, RPE1, KO1,GA20OX1, OsGA20ox1, 20ox1, GA20ox-1, ga20ox1, Os20ox, C20OX2, OsGA20ox2, OsGA20ox-1, GA20ox1, OsGNP1,OsCCR5, OsCCR2, CCR2
52585	36539712	Ma J., Morel J.B., Riemann M., Nick P.	Jasmonic acid contributes to rice resistance against Magnaporthe oryzae.	BMC Plant Biol.	22(1)	601	2022	GH2,RBBI2-1,TIFY11A,ROMT9,TIFY11C,CPS4,PR1B,NOMT,TIFY10C,AOS2,PAL1,TIFY11E,PR1A,OG1	gh2, CAD2, CAD, OsCAD2, OsGH2 ,RBBI2-1, OsBBTI2, BBTI2,OsJAZ3, JAZ3, OsJAZ 9, OsJAZ9, Os-JAZ9, JAZ9, OsTIFY11a, OsJAZ6, JAZ6,COMT, OsCOMT, ROMT-9, OsCOMT1, OsCAldOMT1, CAldOMT1, OsOMT, OsCOMT15, COMT15,OsJAZ2, JAZ2, OsJAZ 11, OsJAZ11, Os-JAZ11, JAZ11, OsTIFY11c, OsJAZ1, JAZ1,OsCPS4, CYC1, OsCYC1, OsCyc1, cpsl3, OsCPSL3, OsCPSsyn, OsCyc1/OsCPS4, OsTPS15, Os-CPS4, TPS11, OsTPS11,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1, OsPR1a, PR1a,OsNOMT, COMTL3, OsCOMTL3, OsCOMT29, COMT29,OsJAZ7, JAZ7, OsJAZ 8, OsJAZ8, Os-JAZ8, JAZ8, OsTIFY10c, OsTIFY10c/OsJAZ8,OsAOS2, CYP74A2, OsAOS, OsAOS1,OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6,OsJAZ 13, OsJAZ13,JAZ13, OsTIFY11e, OsJAZ13a, OsJAZ13b, OsJAZ13c, OsJAZ13d,OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1, OsPR1b, PR1alpha, OsPR1alpha,OsOPR7, OPR7, OsOPR13, OsOPR3, OsOPR5, OsOPR9, OsOPR08-1,  OPR13, OPR3, OPR5, OPR9, OPR08-1, OsOPR8, OPR8
52586	36539640	Jain N., Khurana P., Khurana J.P.	Overexpression of a rice Tubby-like protein-encoding gene, OsFBT4, confers tolerance to abiotic stresses.	Protoplasma			2022		
52587	36513411	An J., Liu Y., Han J., He C., Chen M., Zhu X., Hu W., Song W., Hu J., Guan Y.	Transcriptional multiomics reveals the mechanism of seed deterioration in Nicotiana tabacum L. and Oryza sativa L.	Journal of Advanced Research	42	163-176	2022	RST1,MBD707	OsARF10, ARF10, OsARF18, ARF18, OsRST1, GLR1, OsGLR1,OsMeCP, MeCP, OsMBD707
52588	36578210	Liu C., Wang T., Chen H., Ma X., Jiao C., Cui D., Han B., Li X., Jiao A., Ruan R., Xue D., Wang Y., Han L.	Genomic footprints of Kam Sweet Rice domestication indicate possible migration routes of the Dong people in China and provide resources for future rice breeding.	Mol Plant	16(2)	415-431	2023		
52589	36649409	Bessho-Uehara K., Masuda K., Wang D.R., Angeles-Shim RB., Obara K., Nagai K., Murase R., Aoki S.I., Furuta T., Miura K., Wu J., Yamagata Y., Yasui H., Kantar M.B., Yoshimura A., Kamura T., McCouch S.R., Ashikari M.	<i>Regulator of Awn Elongation 3</i>, an E3 ubiquitin ligase, is responsible for loss of awns during African rice domestication.	Proc. Natl. Acad. Sci. U.S.A.	120(4)	e2207105120	2023	RAE3,RAE2 ,AN1	OsRING273, RING273, OsRAE3,OsEPFL1, EPFL1, GAD1, OsGAD1, OsRAE2, GLA, OsGLA, GAD1/RAE2, OgRAE2,An-1, OsbHLH093, RAE1, An-1/RAE1, RAE1/An-1, OsRAE1, OsAn-1, OgRAE1
52590	36604645	Luo X., Wei Y., Zheng Y., Wei L., Wu F., Cai Q., Xie H., Zhang J.	Analysis of co-expression and gene regulatory networks associated with sterile lemma development in rice.	BMC Plant Biol.	23(1)	11	2023	LBD37,G1,OSH1,OSH15,GNP1,IAA15	OsLBD37, OsLBD3-8, LBD3-8,g1 (lng), lng, g1, ELE, Os ELE, OsG1, G1/ELE, LSL2, OsLSL2,OSKN1, Oskn1, OsKN1, OSH1/Oskn1, HB75,OSH15, OsH15, OSKN3, Oskn3, HOS3, D6, d6, OSH15/Oskn3, HB253, H15, OsKNOX3, KNOX3,GA20OX1, OsGA20ox1, 20ox1, GA20ox-1, ga20ox1, Os20ox, C20OX2, OsGA20ox2, OsGA20ox-1, GA20ox1, OsGNP1,OsIAA15
52591	36708499	Sun G., Wu Z., Zhai L., Yi Y., Yan H., Huang X.	Identification and co-expression network analysis of plumule-preferentially expressed genes in Oryza sativa.	Genes Genomics	45(3)	319-336	2023		
52592	36818891	Lopez A.J., Narvaez-Ortiz HY., Rincon-Benavides MA., Pulido D.C., Fuentes Suarez LE., Zimmermann B.H.	New Insights into rice pyrimidine catabolic enzymes.	Front Plant Sci	14	1079778	2023	DHP,DHODH1,DHODH1,B-UP	OsDHP,OsDHODH1, OsDHPD, DHPD,OsDHODH,Osb-UP, b-UP, Osbeta-UP, beta-UP
52593	36515424	Gao L.J., Liu X.P., Gao K.K., Cui M.Q., Zhu H.H., Li G.X., Yan J.Y., Wu Y.R., Ding Z.J., Chen X.W., Ma J.F., Harberd N.P., Zheng S.J.	ART1 and putrescine contribute to rice aluminum resistance via OsMYB30 in cell wall modification.	J Integr Plant Biol	65(4)	934-949	2023		
52594	36675223	Taniguchi S., Takeda A., Kiryu M., Gomi K.	Jasmonic Acid-Induced &#x3b2;-Cyclocitral Confers Resistance to Bacterial Blight and Negatively Affects Abscisic Acid Biosynthesis in Rice.	Int J Mol Sci	24(2)		2023	TIFY10C,BZIP46,ABI5,RBBI3-3,LEA3-1,NCED2,_,NCED1,GLN1,_,LTPG10,LTI6B,NCED2,PP2C59,RBBI3-2,GNS1,OSM2,_,RAB16C,RAB16D,RBBI3-1,PRX115,SCI1,NCED3	OsJAZ7, JAZ7, OsJAZ 8, OsJAZ8, Os-JAZ8, JAZ8, OsTIFY10c, OsTIFY10c/OsJAZ8,ABL1, bZIP46, OsABL1, OsbZIP46, OsAREB8, OsABF2, ABF2, OsABF3, ABF3, OsbZIP46CA1, OsZIP46, ZIP46, OsbZIP46/OsABF2,OsABI5, OsbZIP10, OsABF1, OREB1, OsABI5-1, OsABI5-2, OsOREB1, OREB1 ,RBBI3-3, OsBBPI, BBPI, IBP1.2, OsIBP1.2, OsBBTI5, BBTI5,OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3, OsLEA3A, LEA3A,OSNCED2, OsNCED2, OsNCED5, NCED5,OsABA45, ABA45, OsGDP, GDP, OsASR, ASR,OSNCED1, OsNCED-1, OsNCED3, OsNced3, NCED3, OsNCED9, NCED9,OsGLN1,OsEnS-122,OsLTPG10, OsLTPg10, LTPL83 ,OsLti6b, Lti6b, OsLTI6B, OsRCI2-6,OsNCED2, OsNced2, OsCCD4b, CCD4b, OsCCD4c, CCD4c,OsPP2C59, OsPP91, PP91,OsRBBI3-2, BBTI3, OsBBTI3,OsPR2, PR2, Gns1, OsGNS1, OsEGL1,OsOSM2,,rab21, OsLEA27, rab16C, OsRAB16C, DHD,rab21, OsLEA26, Rab16D, OsRab16,RBBI3-1, OsBBTI4, BBTI4, IBP1.1, RBBTI4, APIP4, OsAPIP4,prx115, OsPRX115,Sci1, PR6, OsSci1, OsPR6, MGBP1, OsMGBP1,OSNCED3, OsNCED-3, OsNCED3, OsNCED3a, NCED3a, OsNCED4, NCED4, OsNECD2, OsNCED2b, NCED2b 
52595	37008489	Song J., Yang H., Qiao C., Zhu C., Bai T., Du H., Ma S., Wang N., Luo C., Zhang Y., Ma T., Li P., Tian L.	Natural variations of chlorophyll fluorescence and ion transporter genes influenced the differential response of <i>japonica</i> rice germplasm with different salt tolerances.	Front Plant Sci	14	1095929	2023	HKT1,TSC1,HAK21,HCF222,AKT2,SOS1,NHX1,SKC1	OsHKT1, OsHKT2;1, HKT2;1, Ni (Nipponbare)-OsHKT1, Po (Pokkali)-HKT1, OsHKT1;1, HKT1;1,ABCI7, OsABCI7, OsABCI7_1, OsABCI7_2, OsABCI8, ABCI8, OsABCI8.1, OsABCI8.2, OsCNL1, CNL1, OsTSC1, TSC1.1, TSC1.2,OsHAK21,OsHCF222,OsAKT2, ZMK2, OsZMK2, OsK3.1, K3.1,OsSOS1, OsNHA1, NHA1, SOS1/NHX7, NHX7, OsNHX7,OsNHX1, OcNHX1, OgNHX1, OrNHX1, OpNHX1, ObNHX1,OsHKT8, HKT8, Os-HKT1;5, OsHKT1;5, HKT1;5, SKC1, qSKC-1(t), OsSKC1
52596	36726806	Li Q., Zhai W., Wei J., Jia Y.	Rice lipid transfer protein, OsLTPL23, controls seed germination by regulating starch-sugar conversion and ABA homeostasis.	Front Genet	14	1111318	2023	NCED3,WRKY45,NCED1,VP1,NCED1,ABI5,NCED2,ABA8OX2,PR1A,ABA8OX3,PR1B,LTP1.15,NH1,ABA8OX1,BHLH9	OSNCED3, OsNCED-3, OsNCED3, OsNCED3a, NCED3a, OsNCED4, NCED4, OsNECD2, OsNCED2b, NCED2b ,OsWRKY45, OsWRKY45-1, OsWRKY45-2, WRKY45-1, WRKY45-2,OSNCED1, OsNCED-1, OsNCED3, OsNced3, NCED3, OsNCED9, NCED9,Vp1* (OSVP1), OsVP1, OsVp1, Vp1, ABI3, OsABI3, OsLFL4, OsVp-1, OSVP1,OsNCED1, OsCCD4a, CCD4a,OsABI5, OsbZIP10, OsABF1, OREB1, OsABI5-1, OsABI5-2, OsOREB1, OREB1 ,OsNCED2, OsNced2, OsCCD4b, CCD4b, OsCCD4c, CCD4c,OsABA8OX2, OsABA8ox2, CYP707A6, OsCYP707A6, OsAba-ox2, OsABA8ox2, OsABA8OH2, ABA8OH2, ABA8'-OH2, OsABA8'ox2, ABA8'ox2, OsABAX2, ABAX2, OsABA8'OH2, ABA8'OH2,OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1, OsPR1b, PR1alpha, OsPR1alpha,OsABA8OX3, OsABA8ox3, CYP707A7, OsCYP707A7, OsAba-ox3, OsABA8ox3, OsABA8'ox3, ABA8'ox3, OsABAX3, ABAX3, OsABA8'OH3, ABA8'OH3,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1, OsPR1a, PR1a,OsLTP1.15, OsLtp1.15, OsLTPL23, LTPL23,OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2, DLN5, OsDLN5,  OsBTBA1, BTBA1,OsABA8OX1, CYP707A5, OsCYP707A5, ABA8ox1, OsABA8ox1, OsABA8'OH1, ABA8'OH1 ,OsbHLH009, bHLH009, OsMYC2, MYC2
52597	36768236	Wu B., Chen S., Cheng S., Li C., Li S., Chen J., Zha W., Liu K., Xu H., Li P., Shi S., Yang G., Chen Z., Liu K., You A., Zhou L.	Transcriptome Analysis Revealed the Dynamic and Rapid Transcriptional Reprogramming Involved in Cold Stress and Related Core Genes in the Rice Seedling Stage.	Int J Mol Sci	24(3)		2023	WRKY24,TIFY11A,CATA,RR6	OsWRKY24,OsJAZ3, JAZ3, OsJAZ 9, OsJAZ9, Os-JAZ9, JAZ9, OsTIFY11a, OsJAZ6, JAZ6,CATA1, Cat A1*, OSCAT-A, Cat2, CatA1, CAT-A, OsCatA, OsCAT, CAT, catA, OSCATA, OsCATc, OsCATA, OsCAT1A, CAT1, OsCAT1, OsCATC, OsCAT2,OsRR6, rr6, Rra6, OsRRA6
52598	37035088	Lan D., Cao L., Liu M., Ma F., Yan P., Zhang X., Hu J., Niu F., He S., Cui J., Yuan X., Yang J., Wang Y., Luo X.	The identification and characterization of a plant height and grain length related gene <i>hfr131</i> in rice.	Front Plant Sci	14	1152196	2023		
52599	36909437	Mo Y., Li G., Liu L., Zhang Y., Li J., Yang M., Chen S., Lin Q., Fu G., Zheng D., Ling Y.	<i>OsGRF4AA</i> compromises heat tolerance of developing pollen grains in rice.	Front Plant Sci	14	1121852	2023	GRF8,_,GRF9,_,GRF2,PORA,GS2,MIF1,C6,POX1,ABCG26,GRF6,HSFA2A,GELP77,BHLH168,GRF5,ABA8OX2,GELP45,TIP4;3,GRF3,GRF11,BHLH142,GRF7,CSA,ABCG3,GRF1,_,HSFB2C,GRF10,MS2,STRL2	OsGRF8,,OsGRF9,LTPG1, OsLTPG1, OsLTPg1, AGP, OsAGP, OsXYLP8, XYLP8, LTPL65,OsGRF2,OsPorA, OsPORA,OsGRF4, GRF4, GS2/OsGRF4, PT2, GLW2, GS2/GL2, LGS1, OsLGS1,OsMIF1,Osc6, Osg6B, OsG6B, OsLTPG25, OsLTPg25, OsLtpVII.1, Os C6,Pox1(Px,Pe), PRX74, Px, Pe, Pox1, prx74,OsABCG26,OsGRF6,HSfA2a, OsHsfA2a, OsHsf-11, rHsf4, OsHSF11, HSF11, HSF4, RHSP2, OsHsfA2a-1, OsHsfA2a-2, OsHsfA2a-3, OsHsfA2a-4, OsHsfA2a-5, OsHsfA2a-6, OsHsfA2e, HsfA2e ,OsGELP77, OsGELP77a, OsGELP77b,OsbHLH168, bHLH168,OsGRF5,OsABA8OX2, OsABA8ox2, CYP707A6, OsCYP707A6, OsAba-ox2, OsABA8ox2, OsABA8OH2, ABA8OH2, ABA8'-OH2, OsABA8'ox2, ABA8'ox2, OsABAX2, ABAX2, OsABA8'OH2, ABA8'OH2,OsGELP45, OsGELP45a, OsGELP45b,OsTIP4;3, TIP4.3, TIP4-3,OsGRF3,OsGRF11,OsbHLH142, bHLH142, TIP2, OsTIP2, TIP2/TDR/bHLH142,OsGRF7,csa, OsCSA,OsABCG3,OsGRF1,OsOSC12/OsPTS1, OsOSC12, OsPTS1, OSC12, PTS1 ,HSfB2c, OsHsfB2c, OsHsf-24, HSF24, OsHSF24 ,OsGRF10,OsMS2, OsDPW, DPW, DPW1, OsDPW1, OsFAR2, FAR2,OsSTRL2, OsSSL1, SSL1
52600	36714698	ShangGuan X., Qi Y., Wang A., Ren Y., Wang Y., Xiao T., Shen Z., Wang Q., Xia Y.	OsGLP participates in the regulation of lignin synthesis and deposition in rice against copper and cadmium toxicity.	Front Plant Sci	13	1078113	2022	GLP8-5,GLP8-10,GLP8-11,GLP8-6,_,GER3,GER2,_,4CL5,GER6,CYP71Z2,GLP8-9	OsGLP8-5, OsCDP8.5, CDP8.5,OsGLP8-10, OsRGLP2, RGLP2, OsCDP8.10, CDP8.10,OsGLP8-11, RGLP1, OsRGLP1, OsCDP8.11, CDP8.11,OsGLP8-6, OsCDP8.6, CDP8.6,OsOMT26, ROMT-15, ROMT15, COA20, OsCCoAOMT, CCoAOMT,OsGLP8-2, GLP8-2, OsGER3, GLP16, OsEnS-117, OsCDP8.2, CDP8.2,OsGLP8-3, GLP8-3, OsGER2, OsCDP8.3, CDP8.3,OsPAL07, OsPAL, PAL07, OsPAL6, PAL6, PAL1, OsPAL7, PAL7,Os4CL5, 4CL3, Os4CL3,OsGLP8-7, GLP8-7, OsGER6, OsRGLP2, RGLP2, OsCDP8.7, CDP8.7,Oscyp71Z2,OsGLP8-9, OsCDP8.9, CDP8.9
52601	36909410	Iqbal M.F., Zhang Y., Kong P., Wang Y., Cao K., Zhao L., Xiao X., Fan X.	High-yielding nitrate transporter cultivars also mitigate methane and nitrous oxide emissions in paddy.	Front Plant Sci	14	1133643	2023	NAR2.1,HTNE	OsNAR2.1, OsNRT3.1A,NRT2.3, OsNRT2.3, OsNRT2;1, OsNRT2.3a, OsNRT2.3b, OsNRT2;3a, OsNRT2.5 
52602	36743539	Haque U.S., Elias S.M., Jahan I., Seraj Z.I.	Functional genomic analysis of K+ related salt-responsive transporters in tolerant and sensitive genotypes of rice.	Front Plant Sci	13	1089109	2022	TPKA,HAK_LIKE	TPKa, OsTPKa, OsTpka, TPK1a, OsTPK1a,HAK_like, OsHAK_like
52603	36511124	Sheng C., Li X., Xia S., Zhang Y., Yu Z., Tang C., Xu L., Wang Z., Zhang X., Zhou T., Nie P., Baig A., Niu D., Zhao H.	An OsPRMT5-OsAGO2/miR1875-OsHXK1 module regulates rice immunity to blast disease.	J Integr Plant Biol	65(4)	1077-1095	2023		
52604	36608863	Negi Y., Kumar K.	Cloning, homology modelling and expression analysis of Oryza sativa WNK gene family.	Int. J. Biol. Macromol.	229	994-1008	2023		
52605	36672879	Jiang W., Ye Q., Wu Z., Zhang Q., Wang L., Liu J., Hu X., Guo D., Wang X., Zhang Z., He H., Hu L.	Analysis of CAT Gene Family and Functional Identification of OsCAT3 in Rice.	Genes (Basel)	14(1)		2023	CATB,MAS,KS7,CPS4,KS8,NOE1,KS4,CYP99A3,KSL10,CATA,CPS2	CatB, CAT-B, OsCatB, OsCATB, OsCAT1B, CAT1B, CAT2, OsCAT2,OsMAS, MAS1, OsMAS1, OsMAS/SDR110C-MS1, SDR110C-MS1, OsSDR110C-MS1, OsMS1, MS1,OsKS7, KS7, KSL7, OsKSL7, DTC1, OsDTC1, OsKS3, OsDTC1/OsKS7, OsTPS6, TPS6, TPS38, OsTPS38,OsCPS4, CYC1, OsCYC1, OsCyc1, cpsl3, OsCPSL3, OsCPSsyn, OsCyc1/OsCPS4, OsTPS15, Os-CPS4, TPS11, OsTPS11,OsKS8, KS8, KSL8, OsKSL8, DTC2, OsDTC2, OsDTC2/OsKS8, OsTPS32, TPS17, OsTPS17, KSL11, OsKSL11,CATC, OsCat, OsCatC, OsCATC, OsNOE1, noe1, catC, OsCATC, CAT3, OsCAT3, LLM9428, OsLLM9428,OsKS4, KS4, KSL4, OsKSL4, DTS2, OsDTS2, OsTPS16, TPS16, TPS8, OsTPS8,OsCYP99A3,OsKSL10, KS10, OsKS10, OsTPS33, TPS33, TPS21, OsTPS21,CATA1, Cat A1*, OSCAT-A, Cat2, CatA1, CAT-A, OsCatA, OsCAT, CAT, catA, OSCATA, OsCATc, OsCATA, OsCAT1A, CAT1, OsCAT1, OsCATC, OsCAT2,OsCPS2, cps2, OsCPS2ent, CYC2, OsCyc2, OsCYC2, OsCPSL1, cpsl1, OsCyc2/OsCPS2, OsTPS7, Os-CPS2, TPS13, OsTPS13
52606	36998699	Huang Q., Lin B., Cao Y., Zhang Y., Song H., Huang C., Sun T., Long C., Liao J., Zhuo K.	CRISPR/Cas9-mediated mutagenesis of the susceptibility gene <i>OsHPP04</i> in rice confers enhanced resistance to rice root-knot nematode.	Front Plant Sci	14	1134653	2023	PAL1,EDS1,KS4,HPP4,PR4,CYP709C9	OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6,OsEDS1,OsKS4, KS4, KSL4, OsKSL4, DTS2, OsDTS2, OsTPS16, TPS16, TPS8, OsTPS8,OsHMP15, HMP15, OsHPP4, OsaHPP04, HPP04 ,OsPR4, OsPR4a, PR4a, OsPR-4,OsCYP709C9
52607	36679117	Liu L., Wang Y., Tian Y., Song S., Wu Z., Ding X., Zheng H., Huang Y., Liu S., Dong X., Wan J., Liu L.	Isolation and Characterization of <i>SPOTTED LEAF42</i> Encoding a Porphobilinogen Deaminase in Rice.	Plants (Basel)	12(2)		2023	NDHD,MORF8,RPOB,RBCL,RPOC1,MC5,AOX1A,RCA,OTP85,SPL42,MORF8A,MC6,PSBA,PSAA,CATB,AOX1B	ndhD, NdhD, NDH4, NADH4,OsMORF8, OsMORF8b, MORF8b, OsMORF8-2, MORF8-2,rpoB, RpoB, Rpobeta,rbcL, rbcA, OsrbcL,rpoC1, RPO beta', RPObeta', OsRPOC1,OsMC5,Ao1-1, AOX1a, OsAOX1a, AOX 1a,OsRcaII, rca, rcaII, OsRcaI, RCAI, ME137, OsRCA1, RCA, RCAalpha, OsRCAalpha, OsRCAbeta,OsOTP85,PBD, PBGD, HEMC, OsSPL42, OsPBGD, OsPBD,MORF8-like, OsMORF8a, MORF8a, OsMORF8-1, MORF8-1,OsMC6,PsbA, psbA, OsPsbA, PSBD1, OsPSBD1, psbD1,PsaA, psaA, PsAA1, psaA1,CatB, CAT-B, OsCatB, OsCATB, OsCAT1B, CAT1B, CAT2, OsCAT2,AOX1b, OsAOX1b
52608	36818870	Milner M.J., Bowden S., Craze M., Wallington E.J.	<i>OsPSTOL</i> but not <i>TaPSTOL</i> can play a role in nutrient use efficiency and works through conserved pathways in both wheat and rice.	Front Plant Sci	14	1098175	2023		
52609	36719169	Zheng R., Meng X., Hu Q., Yang B., Cui G., Li Y., Zhang S., Zhang Y., Ma X., Song X., Liang S., Li Y., Li J., Yu H., Luan W.	OsFTL12, a member of FT-like family, modulates the heading date and plant architecture by florigen repression complex in rice.	Plant Biotechnol. J.			2023		
52610	36591973	Lu H., Shen Z., Xu Y., Wu L., Hu D., Song R., Song B.	Immune Mechanism of Ethylicin-Induced Resistance to <i>Xanthomonas oryzae</i> pv. oryzae in Rice.	J. Agric. Food Chem.	71(1)	288-299	2023		
52611	36743581	Jayaraman K., Sevanthi A.M., Raman K.V., Jiwani G., Solanke A.U., Mandal P.K., Mohapatra T.	Overexpression of a DUF740 family gene (<i>LOC_Os04g59420)</i> imparts enhanced climate resilience through multiple stress tolerance in rice.	Front Plant Sci	13	947312	2022	SRDP,RING397,SODCC1,_	OsSRDP,OsRING397,sodCc1, SODCC.1, sodA, RSODA, OsSOD1, OsCSD2, OsSodA, SodCc2, OsSODA1, SODCc1-Cu/Zn, OsCu/Zn-SOD2, Cu/Zn-SOD2, OsCSD1.2, CSD1.2, OsSODCc1-Cu/Zn, SODCc1-Cu/Zn, CuZnSOD1, Cu/ZnSOD1, OsCu/ZnSOD1, OsCSD4, CDS4, CuZnSOD4, OsCuZnSOD1, OsCSD1, CSD1, OsSOD2,
52612	36768758	Ai H., Liu X., Hu Z., Cao Y., Kong N., Gao F., Hu S., Shen X., Huang X., Xu G., Sun S.	Mutation of <i>OsLPR3</i> Enhances Tolerance to Phosphate Starvation in Rice.	Int J Mol Sci	24(3)		2023	PT8,LPR3,IPS1,PT10,PT4,PAP10A,PT2,SQD2.2	OsPT8, PHT1-8, OsPht1;8, Pht1;8, PHT1;8, OsPHT1;8,OsLPR3,OsIPS1,OsPT10, PHT1-10, OsPht1;10,OsPT4, PHT1-4, OsPht1;4, PHT1-2, PHT1;4, OsPHT1;4,OsPAP10a, PAP10, OsPAP2, PAP2,OsPT2, PTH1-2, OsPht1;2, PHT1;2, OsPHT1;2,OsSQD2, SQD2, OsSQD2.2
52613	36970706	Ma Q., Wang F., Song W., Huang C., Xie K., Wei Z., Li Y., Chen J., Zhang H., Sun Z.	Transcriptome analysis of auxin transcription factor OsARF17-mediated rice stripe mosaic virus response in rice.	Front Microbiol	14	1131212	2023	TIFY9,BZIP70,SLC1,ARF17,WRKY64,SH11,WRKY104,AHT2,BZIP62,DR8,TIFY11C,WRKY14	OsJAZ11, OsJAZ5, OsTIFY9, JAZ11, JAZ5, JAZ11/TIFY9 ,OsbZIP70,OsSLC1, GA20OX7, OsGA20ox7, ga20ox7, 2-ODD4, Os2-ODD4, 2ODD4, Os2ODD4,OsARF17,OsWRKY64,OsJAmyb, JAmyb, OsJAMyb, OsMYB21, MYB21, Os2R_MYB91, 2R_MYB91, OgSH11, OsSH11,OsWRKY104, CRPG32, OsCRPG32,OsAHT2,OsbZIP62, OsABF8, OsEEL, EEL,OsDR8, OsXNP, FOXRED1,OsJAZ2, JAZ2, OsJAZ 11, OsJAZ11, Os-JAZ11, JAZ11, OsTIFY11c, OsJAZ1, JAZ1,OsWRKY14
52614	36401566	Li Y., Han S., Sun X., Khan N.U., Zhong Q., Zhang Z., Zhang H., Ming F., Li Z., Li J.	Variations in OsSPL10 confer drought tolerance by directly regulating OsNAC2 expression and ROS production in rice.	J Integr Plant Biol	65(4)	918-933	2023		
52615	36818855	Lu Q., Luo X., Yang X., Zhou T., Zhang Y., Lan Y., Zhang D., Zheng L., Li Y., Li L., Zhang S., Liu Y.	CRISPR/Cas9-mediated gene editing of <i>vacuolar ATPase subunit d</i> mediates phytohormone biosynthesis and virus resistance in rice.	Front Plant Sci	14	1122978	2023	AOS3,CM-LOX1,NCED2,VHA-D,SWEET15,TIFY5,PAO7	OsAOS3, HPL2, OsHPL2, OsAOS3/OsHPL2,OsCM-LOX1,OSNCED2, OsNCED2, OsNCED5, NCED5,OsVHA-d, VHA-d,OsSWEET15,OsJAZ 2, OsJAZ2, JAZ2, OsTIFY5, OsSTA188, OsJAZ5, JAZ5,OsPAO7, OsPAO3, PAO3
52616	36660867	Zheng X., Zhang S., Liang Y., Zhang R., Liu L., Qin P., Zhang Z., Wang Y., Zhou J., Tang X., Zhang Y.	Loss-function mutants of OsCKX gene family based on CRISPR-Cas systems revealed their diversified roles in rice.	Plant Genome		e20283	2023		
52617	36630602	Caine R.S., Harrison E.L., Sloan J., Flis P.M., Fischer S., Khan M.S., Nguyen P.T., Nguyen L.T., Gray J.E., Croft H.	The influences of stomatal size and density on rice abiotic stress resilience.	New Phytol.	237(6)	2180-2195	2023		
52618	36682133	Luo C., Akhtar M., Min W., Alam Y., Ma T., Shi Y., She Y., Lu X.	The suppressed expression of a stress responsive gene 'OsDSR2' enhances rice tolerance in drought and salt stress.	J. Plant Physiol.	282	153927	2023		
52619	36646847	Kaur K., Neelam K., Singh J., Malik P., Singh K.	Uncovering natural allelic and structural variants of OsCENH3 gene by targeted resequencing and in silico mining in genus Oryza.	Sci Rep	13(1)	830	2023	CENH3	OsCENH3, CenH3
52620	36771534	Zhao D.D., Jang Y.H., Kim E.G., Park J.R., Jan R., Lubna, Asaf S., Asif S., Farooq M., Chung H., Kang D.J., Kim K.M.	Identification of a Major Locus for Lodging Resistance to Typhoons Using QTL Analysis in Rice.	Plants (Basel)	12(3)		2023	CYP76M17	OsCYP76M17, OsTyM/Hq6, TyM/Hq6, OsCYP76-8, CYP76-8
52621	37035069	Chen K., Su X., Yang H., Peng Y., Wu L., Zhao Z., Lin T., Bai L., Wang L.	Multi-omics analyses reveal the crosstalk between the circadian clock and the response to herbicide application in <i>Oryza sativa</i>.	Front Plant Sci	14	1155258	2023		
52622	36968401	Yang C., Wang C., Khan Z., Duan S., Li Z., Shen H.	Algal polysaccharides-Selenium nanoparticles regulate the uptake and distribution of selenium in rice plants.	Front Plant Sci	14	1135080	2023	PT2,SULTR2;1,LSI1	OsPT2, PTH1-2, OsPht1;2, PHT1;2, OsPHT1;2,OsSultr2;1, OsSul2;1, OsaSULTR2, SULTR2,lsi1, NIP2-1, OsNIP2;1, NIP2;1, OsLsi1, lsi(t), OsNIP2.1/OsLsi1/OsSIIT1, OsNIP2.1, NIP2.1
52623	36909394	Zhang Y., Fan X., Wang Y., Kong P., Zhao L., Fan X., Zhang Y.	<i>OsNAR2.1</i> induced endogenous nitrogen concentration variation affects transcriptional expression of miRNAs in rice.	Front Plant Sci	14	1093676	2023	NAR2.1,MIR1882E,MIR529A,MIR5150,miR1874	OsNAR2.1, OsNRT3.1A,miR1882e, osa-miR1882e, osa-MIR1882e, osa-miR1882e-5p,miR529a, Osa-miR529a, OsmiR529a,miR5150, osa-miR5150, osa-MIR5150osa-miR5150-3p osa-miR5150-5p,OsmiR1874, osa-MIR1874osa-miR1874 osa-miR1874-3p
52624	36714725	Wang C., Qu S., Zhang J., Fu M., Chen X., Liang W.	OsPRD2 is essential for double-strand break formation, but not spindle assembly during rice meiosis.	Front Plant Sci	13	1122202	2022	DMC1A,ZEP1,PRD2,HEI10,DMC1B	OsDMC1A, OsDmc1A, Dmc1A, DMC1, OsDMC1, RiLIM15A, OsRad51,OsZEP1,OsPRD2, OsPRD2/MPS1, OsMPS1, MPS1,HEI10A, HEI10B, OsHEI10,  OsRING434, RING434,OsDMC1B, OsDmc1B, Dmc1B, RiLIM15B 
52625	36683564	Shim Y., Seong G., Choi Y., Lim C., Baek S.A., Park Y.J., Kim J.K., An G., Kang K., Paek N.C.	Suppression of cuticular wax biosynthesis mediated by rice LOV KELCH REPEAT PROTEIN 2 supports a negative role in drought stress tolerance.	Plant Cell Environ.	46(5)	1504-1520	2023		
52626	36702785	Zhou L., Chen S., Cai M., Cui S., Ren Y., Zhang X., Liu T., Zhou C., Jin X., Zhang L., Wu M., Zhang S., Cheng Z., Zhang X., Lei C., Lin Q., Guo X., Wang J., Zhao Z., Jiang L., Zhu S., Wan J.	ESCRT-III component OsSNF7.2 modulates leaf rolling by trafficking and endosomal degradation of auxin biosynthetic enzyme OsYUC8 in rice.	J Integr Plant Biol			2023	VPS20,SNF7.3,VPS24,BRO1,RL17,SNF7,SNF7.4,COW1	OsVPS20,OsSNF7.3,OsVPS24,OsBRO1,NP39, OsSNF7.2, SNF7.2, OsRL17,OsSNF7, OsSnf7, Snf7 ,OsSNF7.4,OsCOW1, oscow1, OsYUC8, YUC8, NAL7, OsNAL7, OsYUCCA8, YUCCA8, FMO, OsFMO(t), REIN7, YUC8/REIN7
52627	36699845	Li P., Jiang J., Zhang G., Miao S., Lu J., Qian Y., Zhao X., Wang W., Qiu X., Zhang F., Xu J.	Integrating GWAS and transcriptomics to identify candidate genes conferring heat tolerance in rice.	Front Plant Sci	13	1102938	2022	TARL1,VQ30,PDIL2-3,GID2,_,JMT2,ACO3,ETR3,COI1,CYP735A4,CRL4,PDIL5-1,BIN2,IAA31,_,SAMT,SGSD3,PDIL5-4,APRL2,PDIL2-1,GRX2,GRX23,ROMT9	OsTAA1, TAA1, OsTAA1;4, TAA1;4, OsTARL1, OsTAA1;3, TAA1;3,OsVQ30,PDIL2;3, OsPDIL2;3, PDIL 2-3, OsPDIL2-3, OsTrx27, Trx27,gid2, GF14e, OsGF14e, OsGID2, 14-3-3e,,OsJMT1, JMT1, OsJMT2,OsACO3, ACO2, OsACO2,OsETR3, OsERS4, OS-ETR3, OsETR3a, OsETR3b, PK2, OsPK2, OsETR2;1, ETR2;1,OsCOI1a, OsCOI1, Os_F0728, COI1a, F0728,  OsFBL4, FBL4,OsCYP735A4,CHARK, S/T kinase, OsCRL4, OsHKL1, OsCDP,PDIL5;1, OsPDIL5;1, PDIL 5-1, OsPDIL5-1, OsTrx09, Trx09, OsTrx9, Trx9,GSK2, Os GSK2, OsGSK2, Os BIN2, OsBIN2, BIN2/GSK2, OsSK22/OsGSK7, OsSK22, OsGSK7, SK22, GSK7, OsSK22/GSK2 ,OsIAA3, IAA3, OsIAA31, OsIAA30, IAA30,,OsSAMT, OsJMT1, JMT1, Os4OCLAMT2, 4OCLAMT2,OsWRKY36, WRKY36, OsSGSD3,PDIL5;4, OsPDIL5;4, PDIL 5-4, OsPDIL5-4,OsAPRL2,PDIL2;1, OsPDIL2;1, OsPDIL2-1, OsTrx17, Trx17,OsGRX2,OsGRX23,COMT, OsCOMT, ROMT-9, OsCOMT1, OsCAldOMT1, CAldOMT1, OsOMT, OsCOMT15, COMT15
52628	36595531	Zhang Z., Tan J., Chen Y., Sun Z., Yan X., Ouyang J., Li S., Wang X.	New Fructokinase, OsFRK3, Regulates Starch Accumulation and Grain Filling in Rice.	J. Agric. Food Chem.	71(2)	1056-1066	2023	FRK3	OsFRK3
52629	36539986	Wang N., Shi Y., Jiang Q., Li H., Fan W., Feng Y., Li L., Liu B., Lin F., Jing W., Zhang W., Shen L.	A 14-3-3 protein positively regulates rice salt tolerance by stabilizing phospholipase C1.	Plant Cell Environ.	46(4)	1232-1248	2023		
52630	36733718	Wang M., Luo S., Fan B., Zhu C., Chen Z.	LIP5, a MVB biogenesis regulator, is required for rice growth.	Front Plant Sci	14	1103028	2023	LIP5	OsLIP5
52631	36860761	Zhang T., Wu A., Hu X., Deng Q., Ma Z., Su L.	Comprehensive study of rice YABBY gene family: evolution, expression and interacting proteins analysis.	PeerJ	11	e14783	2023	YAB6,SH1,YAB3,NAL3,YAB5,YAB7,NAL2,YAB4,TAB1,YAB1,DL	OsYAB6, OsYAB5,YAB2, OsYAB2, OsSh1, Sh1, OsFIL2, OsSH1, Osh1,OsYAB3, OsYAB4, TOB3,nal3(nal2), nal2, nal3, cul3, OsWOX3A, WOX3A, WOX3, OsWOX3, OsNS, OsNS1/OsNS2, OsPRS,OsYABBY5, OsYAB3, YAB3, Os YABBY5, TOB1, OsTPB1,OsYAB7,nal2, nal3, cul2, OsWOX3A, WOX3A, Os NS, NS, OsNS, OsWOX3, OsNS1/OsNS2, OsPRS,OsYAB4, OsYAB7, TOB2, ,Os WUS, WUS, OsWOX1, WOX1, OsWUS, OsTAB, TAB1/WUS, MOC3, MOC3/OsWUS, SRT1, MOC3/TAB1/SRT1, DC1, OsDC1, DAP1, OsDAP1,OsYAB1, FIL1, osFIL1,OsDL, dl(lop), lop, dl, dl1, OsDRPq3, DRPq3
52632	36992681	Sukegawa S., Nureki O., Toki S., Saika H.	Genome editing in rice mediated by miniature size Cas nuclease SpCas12f.	Front Genome Ed	5	1138843	2023		
52633	36657664	Sun Z., Liu K., Chen C., Chen D., Peng Z., Zhou R., Liu L., He D., Duan W., Chen H., Huang C., Ruan Z., Zhang Y., Cao L., Zhan X., Cheng S., Sun L.	OsLDDT1, encoding a transmembrane structural DUF726 family protein, is essential for tapetum degradation and pollen formation in rice.	Plant Sci.	329	111596	2023		
52634	36346128	Tian P., Liu J., Yan B., Zhou C., Wang H., Shen R.	BRASSINOSTEROID-SIGNALING KINASE1-1, a positive regulator of brassinosteroid signalling, modulates plant architecture and grain size in rice.	J. Exp. Bot.	74(1)	283-295	2023		
52635	36626582	Sun B., Li W., Ma Y., Yu T., Huang W., Ding J., Yu H., Jiang L., Zhang J., Lv S., Yang J., Yan S., Liu B., Liu Q.	OsGLP3-7 positively regulates rice immune response by activating hydrogen peroxide, jasmonic acid, and phytoalexin metabolic pathways.	Mol. Plant Pathol.	24(3)	248-261	2023		
52636	36998687	Yan M., Feng F., Xu X., Fan P., Lou Q., Chen L., Zhang A., Luo L., Mei H.	Genome-wide association study identifies a gene conferring high physiological phosphorus use efficiency in rice.	Front Plant Sci	14	1153967	2023	CYP714B2,AAD,GA2OX5	OsCYP714B2,OsAAD,OsGA2ox5, 2-ODD32, Os2-ODD32, 2ODD32, Os2ODD32
52637	36714747	Gu S., Zhuang J., Zhang Z., Chen W., Xu H., Zhao M., Ma D.	Multi-omics approach reveals the contribution of <i>OsSEH1</i> to rice cold tolerance.	Front Plant Sci	13	1110724	2022	CATB,OPR8,PRX16,SEH1,APX8,LOX10,POXN,SODCC1,_,PRX45,PRX72,PRX58,PRX115,PRX117,POX22.3,GRL8,PRX30,OPR1,APX2,ANS,ACS6,SODB	CatB, CAT-B, OsCatB, OsCATB, OsCAT1B, CAT1B, CAT2, OsCAT2,OsOPR8, OsOPR7, OsOPR02-1,prx16, OsPRX16, OsPOD1, POD1,OsWD40-19, WD40-19, OsSEH1,OsAPx8, OsAPx08, OSAPX8, APx8, OsAPX8,OsLOX10, OsLOX3, LOX3,poxN, prx38, prxRPN, RPN, poxN/PRX38, Osprx38, OsPOXN,sodCc1, SODCC.1, sodA, RSODA, OsSOD1, OsCSD2, OsSodA, SodCc2, OsSODA1, SODCc1-Cu/Zn, OsCu/Zn-SOD2, Cu/Zn-SOD2, OsCSD1.2, CSD1.2, OsSODCc1-Cu/Zn, SODCc1-Cu/Zn, CuZnSOD1, Cu/ZnSOD1, OsCu/ZnSOD1, OsCSD4, CDS4, CuZnSOD4, OsCuZnSOD1, OsCSD1, CSD1, OsSOD2,OsPAL07, OsPAL, PAL07, OsPAL6, PAL6, PAL1, OsPAL7, PAL7,prx45, OsPRX45, OsPRX2,prx72, OsPrx72,prx58, OsPRX58,prx115, OsPRX115,prx117, OsPRX117, OsPRX47, PRX47,POX22.3, OSPER, OsPOX, POX, Pir3, prx111, POX22, OsPOX1, POX1, OsPOX22.3, OsPR9, PR9,OsGRL8,prx30, OsPrx30,OsOPR1, OsOPR2, OsOPR11, OsOPR06-6, OPDAR1, OsOPR, OPDAR,OsAPX2, OsAPx02, APXb, OsAPx2, OSAPX2, APx2, cAPX, OsAPX1, APX1,ANS, OsANS1, ANS1, LDOX, LDOX1, OsLDOX, OsLDOX1,OsACS6, 4ACS6, Os4ACS6,SodB, Fe-SOD, Fe- SOD, OsFe-SOD, Fe+-SOD, OsFe+-SOD, OsFe-SODa, OsFe-SODb, OsFeSODb, FeSODb, OsFSD1.2, FSD1.2, FeSOD2, OsFSD2, FSD2, OsFSD1, FSD1, ALM1, OsALM1
52638	36808553	Leng J., Wei X., Jin X., Wang L., Fan K., Zou K., Zheng Z., Saridis G., Zhao N., Zhou D., Duanmu D., Wang E., Cui H., Bucher M., Xue L.	ARBUSCULAR MYCORRHIZA-INDUCED KINASES AMK8 and AMK24 associate with the receptor-like kinase KINASE3 to regulate arbuscular mycorrhizal symbiosis in Lotus japonicus.	Plant Cell			2023		
52639	36813243	Peng M., Gan F., Lin X., Yang R., Li S., Li W., Wu L., Fan X., Chen K.	Overexpression of OsNF-YB4 leads to flowering early, improving photosynthesis and better grain yield in hybrid rice.	Plant Sci.	331	111661	2023		
52640	36773757	Singh S., Vergish S., Jain N., Sharma A.K., Khurana P., Khurana J.P.	OsCRY2 and OsFBO10 co-regulate photomorphogenesis and photoperiodic flowering in indica rice.	Plant Sci.	330	111631	2023		
52641	36834831	Chen R., Wang S., Sun Y., Li H., Wan S., Lin F., Xu H.	Comparison of Glyphosate-Degradation Ability of aldo-keto reductase (AKR4) Proteins in Maize, Soybean and Rice.	Int J Mol Sci	24(4)		2023	AKR2,_,ARK1,_,_,_,DMAS1,_,_,_,_,_,_,_,_,_,M6PR,_,KOB1,_,AKR3,_,_,AKR4C15,_,ALR2,_,PLR1	OsAKR2, AKR4C14, OsAKR4-2, AKR4-2,OsAKR5, AKR5,OsARK1, OsAKR4-1, AKR4-1,OsAKR5, AKR5,OsAKR2, AKR2,OsAKR, AKR,OsDMAS1, OsAKR5, AKR5,OsAKR3, AKR3,OsAKR5, AKR5,OsAKR, AKR,OsAKR5, AKR5,OsAKR, AKR, OsAKR3, AKR3,OsAKR3, AKR3,OsAKR5, AKR5,OsAKR3, AKR3,OsAKR3, AKR3,OsM6PR1, M6PR1, OsM6PR2, M6PR2, OsM6PR, OsS6PDH, S6PDH, OsAKR4-4, AKR4-4,OsAKR2, AKR2,OsKOB1, OsAKR3, AKR3,OsAKR5, AKR5,OsAKR3, OsALR1, ALR1, OsAKR4-3, AKR4-3,OsAKR1, AKR1,OsAKR, AKR,OsAKR4C15, OsALR1, ALR1,OsAKR3, AKR3,OsALR2,OsAKR5, AKR5,OsPLR1, OsAKR2, AKR2
52642	36775108	Islam F., Khan M.S.S., Ahmed S., Abdullah M., Hannan F., Chen J.	OsLPXC negatively regulates tolerance to cold stress via modulating oxidative stress, antioxidant defense and JA accumulation in rice.	Free Radic. Biol. Med.	199	2-16	2023	PRXIIE2,LCAT3,LOX11,APX3,WRKY71,WRKY13,LOX8,COLD1,LPXC,LOX1,SPH,APX5,AOC,LOX7,SAPK2,APX8,WRKY62,MSRMK2,WRKY70,APX7,WRKY104	Pre IIE2, OsPrxII E2, PrxII E2, OsPrxIIE2, PrxIIE2,OsLCAT3,OsLOX11, OsRCI-1, RCI-1, OsBphi262, OsLOX12, OsLOX2.2, LOX2.2, LOX2.1, OsLOX2.1, OsLOX14, LOX14,OsAPx3, OsAPx03, OSAPX3, APx3, mAPX,OsWRKY71, WRKY-71,OsWRKY13,OsLOX8, OsLOX9, LOX9, OsLOX2;3, LOX2;3, OsLOX2, OsLOX1, CM-LOX8,OsCOLD1,OsLPXC,OsLOX1, OsLOX5, OsLOX2, LOX2,OsLOX6, LOX6, LOX5, OsLOX5,OsAPx5, OsAPx05, OSAPX5, APx5,OsAOC, AOC1, OsAOC1, HB, CPM2, OsAOC4, AOC4,OsLOX7, LOX6, OsLOX6,OsSAPK2, OsSnRK2.2, SnRK2.2,OsAPx8, OsAPx08, OSAPX8, APx8, OsAPX8,OsWRKY62, OsWRKY62.1, OsWRKY62.2, XB10, OsWRKY62-1, OsWRKY62-2,OsMSRMK2, OsMAPK5, OsMAP1, OsMPK3, OsBIMK1, OsMAPK2, MPK5, BIMK1, MAPK2, MAPK5, MPK3, OsMPK5, OsMAPK3, OsMAPK5b, MAPK3,OsWRKY70,OsAPx7, OsAPx07, OSAPX7, APx7, sAPX,OsWRKY104, CRPG32, OsCRPG32
52643	36402551	Wang S., Xu T., Chen M., Geng L., Huang Z., Dai X., Qu H., Zhang J., Li H., Gu M., Xu G.	The transcription factor OsWRKY10 inhibits phosphate uptake via suppressing OsPHT1;2 expression under phosphate-replete conditions in rice.	J. Exp. Bot.	74(3)	1074-1089	2023	WRKY10,PT10,PT2,PT3	OsWRKY10,OsPT10, PHT1-10, OsPht1;10,OsPT2, PTH1-2, OsPht1;2, PHT1;2, OsPHT1;2,OsPT3, PHT1-3, OsPht1;3, OjPT1, PHT1;3
52644	36840165	Fan T., Wu C., Yang W., Lv T., Zhou Y., Tian C.	The <i>LHT</i> Gene Family in Rice: Molecular Characterization, Transport Functions and Expression Analysis.	Plants (Basel)	12(4)		2023	LHT9,LHT7,LHT8,HT,LHT4A,LHT2	OsLHT9, OsLHT4, LHT4,OsLHT7, OsLHT5, LHT5,OsLHT8, OsLHT3, LHT3,OsHT, OsLHT1, LHT1,OsLHT4A, OsLHT6, LHT6,OsLHT2
52645	36808375	Han Y., Zhang C., Sha H., Wang X., Yu Y., Liu J., Zhao G., Wang J., Qiu G., Xu X., Fang J.	Ubiquitin-conjugating enzyme OsUBC11 Affects the Development of Roots via Auxin Pathway.	Rice (N Y)	16(1)	9	2023	YUCCA9,ARF16,YUCCA4,PLT8,CRL1,WOX11,YUCCA7,UBC11,RAU1,YUCCA6,IAA31	OsYUCCA9, OsYUC9, YUC9,OsARF16,OsYUCCA4, OsYUC4, YUC4, YUCCA6, OsYUCCA6,OsPLT8, CRL5, OsCRL5, AP2/EREBP141, AP2/EREBP#141 ,crl1, crl1*, ARL1, ARL1/CRL1, OsLBD3-2, LBD3-2, OsCRL1,OsWOX11, Os WOX11, OsWOX12A,OsYUCCA7, OsYUC7, OsYUC5, YUC5, YUC7,OsUBC11,OsLAX1, OsRAU1, OsAUX1, LAX1, AUX1,OsYUCCA6, OsYUC6, YUC6,OsIAA3, IAA3, OsIAA31, OsIAA30, IAA30
52646	36723676	Niu Y., Fan S., Cheng B., Li H., Wu J., Zhao H., Huang Z., Yan F., Qi B., Zhang L., Zhang G.	Comparative transcriptomics and co-expression networks reveal cultivar-specific molecular signatures associated with reproductive-stage cold stress in rice.	Plant Cell Rep.	42(4)	707-722	2023		
52647	36775071	Liu Y.H., Tseng T.S., Wu C.R., Cho S.T., Kuo C.H., Huang X.J., Cheng J.Y., Hsu K.H., Lin K.F., Liu C.C., Yeh C.H.	Rice OsHsp16.9A interacts with OsHsp101 to confer thermotolerance.	Plant Sci.	330	111634	2023		
52648	36807270	Patoliya J., Thaker K., Rabadiya K., Patel D., Jain N.K., Joshi R.	Uncovering the Interaction Interface Between Harpin (Hpa1) and Rice Aquaporin (OsPIP1;3) Through Protein-Protein Docking: An In Silico Approach.	Mol. Biotechnol.			2023		
52649	36787850	Yan L.L., Mi J., Shen C.C., Qian R., Wang J., Pu C.X., Sun Y.	OsCIP1, a secreted protein, binds to and stabilizes OsCR4 to promote aleurone layer development, seed germination and early seedling growth in rice.	Plant Sci.	330	111637	2023		
52650	36437699	Huang J., Qiu Z.Y., He J., Xu H.S., Wang K., Du H.Y., Gao D., Zhao W.N., Sun Q.G., Wang Y.S., Wen P.Z., Li Q., Dong X.O., Xie X.Z., Jiang L., Wang H.Y., Liu Y.Q., Wan J.M.	Phytochrome B mediates dim-light-reduced insect resistance by promoting the ethylene pathway in rice.	Plant Physiol.	191(2)	1272-1287	2023		
52651	36903837	Gupta A., Singh A.N., Tiwari R.K., Sahu P.K., Yadav J., Srivastava A.K., Kumar S.	Salinity Alleviation and Reduction in Oxidative Stress by Endophytic and Rhizospheric Microbes in Two Rice Cultivars.	Plants (Basel)	12(5)		2023	CATA,ERF131,DHN1,SODA1,PIP1A,APX1	CATA1, Cat A1*, OSCAT-A, Cat2, CatA1, CAT-A, OsCatA, OsCAT, CAT, catA, OSCATA, OsCATc, OsCATA, OsCAT1A, CAT1, OsCAT1, OsCATC, OsCAT2,OsERF#131, OsERF131, AP2/EREBP#094, AP2/EREBP94, SERF1, OsSERF1,LIP9, OsLIP9, lip9, DHN1, DIP1, OsDip1, OsLEA23, OsDhn1, COR410, OsLEA23/DIP1, DIP1/OsLEA23,SodA1, OsSODA1, Mn-SOD, Mn- SOD, OsMSD, MnSOD, OsMnSOD, MnSOD1, OsMnSOD1,OsPIP1a, OsPIP1;1, PIP1a, RWC-1, PIP1-1, RWC1, OsPIP1-1, PIP1;1, PIP1-5,OsAPX1, APXa, OsAPXa, OsAPx01, OsAPx1, OSAPX1, APx1, cAPX, APX2, cAPXa, OscAPXa
52652	36847882	Zhang L., Zheng L., Wu J., Liu Y., Liu W., He G., Wang N.	osccrl1 is Essential for Phenylpropanoid Metabolism in Rice Anthers.	Rice (N Y)	16(1)	10	2023	RADC1,4CL3,C6,AP37 ,CHS,MS188,DFR2 	OsAP25, Radc1, OsRADC1, AP25,Os4CL3, Os4CL2, Os4CL, 4CL2, 4CL,Osc6, Osg6B, OsG6B, OsLTPG25, OsLTPg25, OsLtpVII.1, Os C6,OsAP37,CHS*, Oschs, chs, chas, OsCHS, OsCHS1, CHS1, OsPKS26, PKS26, OsCHS24, CHS24, OsCHS27, CHS27,OsMYB80, MYB80, OsMS188, Os2R_MYB44, 2R_MYB44, OsMYB103/OsMYB80/OsMS188/BM1, OsMYB103, MYB103,OsTKPR1, TKPR1, OsDFR2, OS-DFR2, OsDFR2A, DFR2A, OsCCRL1, CCRL1
52653	36815292	Zhang P., Ma X., Liu L., Mao C., Hu Y., Yan B., Guo J., Liu X., Shi J., Lee G., Pan X., Deng Y., Zhang Z., Kang Z., Qiao Y.	MEDIATOR SUBUNIT 16 negatively regulates rice immunity by modulating PATHOGENESIS RELATED 3 activity.	Plant Physiol.			2023		
52654	36637212	Chang X., Yang M., Li H., Wu J., Zhang J., Yin C., Ma W., Chen H., Zhou F., Lin Y.	Cloning of the promoter of rice brown planthopper feeding-inducible gene OsTPS31 and identification of related cis-regulatory elements.	Pest Manag. Sci.	79(5)	1809-1819	2023		
52655	36841862	Zhang R., Hu Z., Wang Y., Hu H., Li F., Li M., Ragauskas A., Xia T., Han H., Tang J., Yu H., Xu B., Peng L.	Single-molecular insights into the breakpoint of cellulose nanofibers assembly during saccharification.	Nat Commun	14(1)	1100	2023	BC6	Bc6*, Bc6, OsCesA9, CESA9, OsCESA9, OS_CESA09, OsCesA 9, CesA9, BC88, SDBC1, OsSDBC1
52656	36774910	Aycan M., Nahar L., Baslam M., Mitsui T.	B-type response regulator hst1 controls salinity tolerance in rice by regulating transcription factors and antioxidant mechanisms.	Plant Physiol. Biochem.	196	542-555	2023		
52657	36493384	Shim J.S., Jeong H.I., Bang S.W., Jung S.E., Kim G., Kim Y.S., Redillas MCFR., Oh S.J., Seo J.S., Kim J.K.	DROUGHT-INDUCED branched-chain amino acid aminotransferase enhances drought tolerance in rice.	Plant Physiol.	191(2)	1435-1447	2023	DIAT	OsAT-IV, OsDIAT
52658	36383488	Wang P., Jia H., Guo T., Zhang Y., Wang W., Nishimura H., Li Z., Kawano Y.	The secreted immune response peptide 1 functions as a phytocytokine in rice immunity.	J. Exp. Bot.	74(3)	1059-1073	2023	IRP1	OsIRP1
52659	36835070	Feng T., Zhang Z.Y., Gao P., Feng Z.M., Zuo S.M., Ouyang S.Q.	Suppression of Rice Osa-miR444.2 Improves the Resistance to Sheath Blight in Rice Mediating through the Phytohormone Pathway.	Int J Mol Sci	24(4)		2023	RBLS2,WRKY30,WRKY62,PR4C,PR10B,JIOSPR10,MIR444B,RH3,ASR4	ASR1, OsAsr1, OsASR3, ASR3, Asr3, OsRBLS2,OsWRKY30,OsWRKY62, OsWRKY62.1, OsWRKY62.2, XB10, OsWRKY62-1, OsWRKY62-2,OsPR4c,RPR10b, PR-10b, PR10b, PBZ1, PBZ-1, OsPBZc, OsPR10b, BetV, OsBetV,JIOsPR10, OsPR10, PR10, OsJiPR10, JiPR10, OsPR10c, PR10c,miR444b, osa-MIR444b, osa-miR444b, osa-miR444b.1, osa-miR444b.2,OsRH3,Asr4, OsASR6, OsASR2, Asr2, OsASR1, ASR1
52660	36738935	Sun Y., Wu Q., Xie Z., Huang J.	Transcription factor OsNAC016 negatively regulates phosphate-starvation response in rice.	Plant Sci.	329	111618	2023		
52661	36828354	Wang S., Yao H., Li L., Du H., Guo P., Wang D., Rennenberg H., Ma M.	Differentially-expressed genes related to glutathione metabolism and heavy metal transport reveals an adaptive, genotype-specific mechanism to Hg2+ exposure in rice (Oryza sativa L.).	Environ. Pollut.	324	121340	2023		
52662	36822026	Zhang Y., He Z., Qi X., Li M., Liu J., Le S., Chen K., Wang C., Zhou Y., Xu Z., Chen J., Guo C., Tang W., Ma Y., Chen M.	Overexpression of MYB-like transcription factor SiMYB30 from foxtail millet (Setaria italica L.) confers tolerance to low nitrogen stress in transgenic rice.	Plant Physiol. Biochem.	196	731-738	2023		
52663	36792661	Anilkumar C., Muhammed Azharudheen TP., Sah R.P., Sunitha N.C., Devanna B.N., Marndi B.C., Patra B.C.	Gene based markers improve precision of genome-wide association studies and accuracy of genomic predictions in rice breeding.	Heredity	130(5)	335-345	2023		
52664	36870160	Shen T., Li K., Yan R., Xu F., Ni L., Jiang M.	The UDP-glucuronic acid decarboxylase OsUXS3 regulates Na+ ion toxicity tolerance under salt stress by interacting with OsCATs in rice.	Plant Physiol. Biochem.	196	850-858	2023		
52665	36866040	Lin L., Tijjani I., Guo H., An Q., Cao J., Chen X., Liu W., Wang Z., Norvienyeku J.	Cytoplasmic dynein1 intermediate-chain2 regulates cellular trafficking and physiopathological development in <i>Magnaporthe oryzae</i>.	iScience	26(2)	106050	2023		
52666	36732485	Zheng Y., Fu D., Yang Z.	OsDPE2 Regulates Rice Panicle Morphogenesis by Modulating the Content of Starch.	Rice (N Y)	16(1)	5	2023	DPE2,LAX1	OsDPE2, OsDpe2, Dpe2,lax, lax(lx), lx, OsbHLH123, bHLH123, OsLAX1, BOS1, OsBOS1
52667	36807738	Liu K., Chen J., Sun S., Chen X., Zhao X., Hu Y., Qi G., Li X., Xu B., Miao J., Xue C., Zhou Y., Gong Z.	Histone deacetylase OsHDA706 increases salt tolerance via H4K5/K8 deacetylation of OsPP2C49 in rice.	J Integr Plant Biol			2023		
52668	36799488	Du Y., Zhou J., Chen G., Li X., Fang L., Li F., Yuan Y., Wang X., Yang Y., Dou F.	Dark Side of Ammonium Nitrogen in Paddy Soil with Low Organic Matter: Stimulation of Microbial As(V) Reduction and As(III) Transfer from Soil to Rice Grains.	J. Agric. Food Chem.	71(8)	3670-3680	2023		
52669	36707918	Khanday I., Santos-Medell&#xed;n C., Sundaresan V.	Somatic embryo initiation by rice BABY BOOM1 involves activation of zygote-expressed auxin biosynthesis genes.	New Phytol.	238(2)	673-687	2023		
52670	36804388	Yang X., Yang G., Wei X., Huang W., Fang Z.	OsAAP15, an amino acid transporter in response to nitrogen concentration, mediates panicle branching and grain yield in rice.	Plant Sci.	330	111640	2023		
52671	36822628	Chen E., Hou Q., Liu K., Gu Z., Dai B., Wang A., Feng Q., Zhao Y., Zhou C., Zhu J., Shangguan Y., Wang Y., Lv D., Fan D., Huang T., Wang Z., Huang X., Han B.	Armadillo Repeat Only protein gs10 negatively regulates brassinosteroid signaling to control rice grain size.	Plant Physiol.			2023	GS10	OsGS10
52672	36807470	Bhadouria J., Mehra P., Verma L., Pazhamala L.T., Rumi R., Panchal P., Sinha A.K., Giri J.	Root-Expressed Rice PAP3b Enhances Secreted APase Activity and Helps Utilize Organic Phosphate.	Plant Cell Physiol.			2023		
52673	36792993	Edzesi W.M., Dang X., Liu E., Bandoh W.K.N., Gakpetor P.M., Ofori D.A., Hong D.	Screening germplasm and detecting QTLs for mesocotyl elongation trait in rice (Oryza sativa L.) by association mapping.	BMC Genom Data	24(1)	8	2023		
52674	36691352	Zhao Q., Guan X., Zhou L., Asad M.A., Xu Y., Pan G., Cheng F.	ABA-triggered ROS burst in rice developing anthers is critical for tapetal programmed cell death induction and heat stress-induced pollen abortion.	Plant Cell Environ.	46(5)	1453-1471	2023		
52675	36840269	Ndikuryayo C., Ndayiragije A., Kilasi N.L., Kusolwa P.	Identification of Drought Tolerant Rice (<i>Oryza Sativa</i> L.) Genotypes with Asian and African Backgrounds.	Plants (Basel)	12(4)		2023		
52676	36835053	Maeda S., Ackley W., Yokotani N., Sasaki K., Ohtsubo N., Oda K., Mori M.	Enhanced Resistance to Fungal and Bacterial Diseases Due to Overexpression of BSR1, a Rice RLCK, in Sugarcane, Tomato, and Torenia.	Int J Mol Sci	24(4)		2023		
52677	36579664	Wu M.W., Liu J., Bai X., Chen W.Q., Ren Y., Liu J.L., Chen M.M., Zhao H., Yao X., Zhang J.D., Wan J., Liu C.M.	Transcription factors NAC20 and NAC26 interact with RPBF to activate albumin accumulations in rice endosperm.	Plant Biotechnol. J.	21(5)	890-892	2023		
52678	36739313	Kruasuwan W., Lohmaneeratana K., Munnoch J.T., Vongsangnak W., Jantrasuriyarat C., Hoskisson P.A., Thamchaipenet A.	Transcriptome Landscapes of Salt-Susceptible Rice Cultivar IR29 Associated with a Plant Growth Promoting Endophytic Streptomyces.	Rice (N Y)	16(1)	6	2023		
52679	36874914	Xue Y., Muhammad S., Yang J., Wang X., Zhao N., Qin B., Qiu Y., Du Z., Ulhassan Z., Zhou W., Liu F., Li R.	Comparative transcriptome-wide identification and differential expression of genes and lncRNAs in rice near-isogenic line (KW-<i>Bph36</i>-NIL) in response to BPH feeding.	Front Plant Sci	13	1095602	2022		
52680	36833384	Gao Q., Wang H., Yin X., Wang F., Hu S., Liu W., Chen L., Dai X., Liang M.	Identification of salt tolerance Related Candidate Genes in 'Sea Rice 86' at the Seedling and Reproductive Stages Using QTL-Seq and BSA-Seq.	Genes (Basel)	14(2)		2023		
52681	36840276	Fekih R., Ishimaru Y., Okada S., Maeda M., Miyagi R., Obana T., Suzuki K., Inamori M., Enoki H., Yamasaki M.	High-Density Linkage Maps from Japanese Rice <i>japonica</i> Recombinant Inbred Lines Using Genotyping by Random Amplicon Sequencing-Direct (GRAS-Di).	Plants (Basel)	12(4)		2023		
52682	36789453	Cai Y., Huang L., Song Y., Yuan Y., Xu S., Wang X., Liang Y., Zhou J., Liu G., Li J., Wang W., Wang Y.	LAZY3 interacts with LAZY2 to regulate tiller angle by modulating shoot gravity perception in rice.	Plant Biotechnol. J.			2023		
52683	36758293	Deng N., Zhu H., Xiong J., Gong S., Xie K., Shang Q., Yang X.	Magnesium deficiency stress in rice can be alleviated by partial nitrate nutrition supply.	Plant Physiol. Biochem.	196	463-471	2023		
52684	36819122	Singh A.K., Ponnuswamy R., Srinivas Prasad M., Sundaram R.M., Hari Prasad AS., Senguttuvel P., Kempa Raju KB., Sruthi K.	Improving blast resistance of maintainer line DRR 9B by transferring broad spectrum resistance gene <i>Pi2</i> by marker assisted selection in rice.	Physiol Mol Biol Plants	29(2)	253-262	2023		
52685	36816487	Karan B., Mahapatra S., Sahu S.S., Pandey D.M., Chakravarty S.	Computational models for prediction of protein-protein interaction in rice and <i>Magnaporthe grisea</i>.	Front Plant Sci	13	1046209	2022		
52686	36771759	Li Z., Liu J., Wang X., Wang J., Ye J., Xu S., Zhang Y., Hu D., Zhang M., Xu Q., Wang S., Yang Y., Wei X., Feng Y., Wang S.	<i>LG5</i>, a Novel Allele of <i>EUI1</i>, Regulates grain size and flag leaf Angle in Rice.	Plants (Basel)	12(3)		2023	CYCB1;1,GS5,CDC2-2,EUI1,CYCB2;2,CYCA3;2,GS2,CDKB2;1 	CycB1;1, CycB1;os;1, Orysa;CycB1;1, OsCycB1;1, CyclaZm, CYCIaZm, OsCYCIaZm, OsCYCB1;4,OsSCP26, SCP26, OsGS5,cdc2Os-2, CDC2Os-2, CDKA-2, CDKA;2, Orysa;CDKA;2, Rcdc2-2, OsCDKA;2, OsCDKA2, CDKA2, CDKA;1, OsCDKA;1, CDC20S-2, OsCDC20S-2,eui1, GA16,17ox, CYP714D1, EUI, CYP714D1/EUI, OsEUI, LG5, OsLG5,cycB2;2 (=cycOs2), cycB2;2, cycOs2, CycB2;2, CycOs2, CYCB2-2, CYCOS2, CycB2-Os2, CYCB2, CycB2;os;2, OsCycB2;2, Orysa;CycB2;2, OsCYCOS2, Os;cycB2;2, CYCB2.2, OsCYCB2.2,OsCYCA3;2, CycA3;2, CycA3;os;2, Orysa;CycA3;2, CYCA2.1, CYCA2;1,OsGRF4, GRF4, GS2/OsGRF4, PT2, GLW2, GS2/GL2, LGS1, OsLGS1,Orysa;CDKB2;1, OsCDKB2;1, cdc2Os3, Oscdc20s-3, cdc20s-3, Orysa;CDKB;2, CYCB2.1, CDKB-2, OsCDKB-2
52687	36812961	Prathap V., Kumar S., Tyagi A.	Comparative proteome analysis of phosphorus-responsive genotypes reveals the proteins differentially expressed under phosphorous starvation stress in rice.	Int. J. Biol. Macromol.	234	123760	2023		
52688	36781713	Sun Y., Chen Z., Chen H., Wang C., Li B., Qin L., Lin X., Cai Y., Zhou D., Ouyang L., Zhu C., He H., Peng X.	Analysis of the Genetic Stability of Insect and Herbicide Resistance Genes in Transgenic Rice Lines: A Laboratory and Field Experiment.	Rice (N Y)	16(1)	8	2023		
52689	36829946	Jardim-Messeder D., Caverzan A., Balbinott N., Menguer P.K., Paiva A.L.S., Lemos M., Cunha J.R., Gaeta M.L., Costa M., Zamocky M., Saibo N.J.M., Silveira J.A.G., Margis R., Margis-Pinheiro M.	Stromal Ascorbate Peroxidase (<i>OsAPX7</i>) Modulates Drought Stress Tolerance in Rice (<i>Oryza sativa</i>).	Antioxidants (Basel)	12(2)		2023	ABA1,RPN11,IAA8,_,_,PYL/RCAR4,_,LYCE,BETACA1,RPT3,ANS2,NADK1,EIL3,APX7,GS2,NAAT1,NCED1	OsABA1, Zep1, OsAba1, Aba2, OsAba2, OsZep1, Zep, OsZep, Aba1, OsABA2, Osaba1, OsZEP-1, OsZEP, OSZEP1, ZEP1, ZEP,OsRpn11, Rpn11,OsIAA8,OsNADK,OsNADK,OsPYL/RCAR4, PYL4, OsPYL4, OsPYL6, PYL6,OsNADK,OsLCYe, OsLCYepsilon, LCYepsilon, epsilon-LCY, OsLYCE,OsCA, CA, OsbetaCA1, betaCA1, CA1,OsRpt3, Rpt3,OsANS2,OsNADK1,OsEIL3,OsAPx7, OsAPx07, OSAPX7, APx7, sAPX,OsGS2, GLN2, OsGLN2, RGS31, OsRGS31,OsNAAT1,OsNCED1, OsCCD4a, CCD4a
52690	36479821	Li S., Hu Y., An C., Wen Q., Fan X., Zhang Z., Sherif A., Liu H., Xing Y.	The amino acid residue E96 of Ghd8 is crucial for the formation of the flowering repression complex Ghd7-Ghd8-OsHAP5C in rice.	J Integr Plant Biol	65(4)	1012-1025	2023		
52691	36823690	Xie W., Liu S., Gao H., Wu J., Liu D., Kinoshita T., Huang C.F.	PP2C.D phosphatase sal1 positively regulates aluminum resistance via restriction of aluminum uptake in rice.	Plant Physiol.			2023	NRAMP4,SAL1	OsNRAMP4, Nrat1, Nramp6, OsNRAT1, NRAT1, FCO5,OsPP2C60, PP2C60, OsPP92, PP92, OsSAL1
52692	36840921	de Tombeur F., P&#xe9;lissier R., Shihan A., Rahajaharilaza K., Fort F., Mahaut L., Lemoine T., Thorne S.J., Hartley S.E., Luquet D., Fabre D., Lambers H., Morel J.B., Ballini E., Violle C.	Growth-defence trade-off in rice: fast-growing and acquisitive genotypes have lower expression of genes involved in immunity.	J. Exp. Bot.			2023		
52693	36775978	Haider I., Yunmeng Z., White F., Li C., Incitti R., Alam I., Gojobori T., Ruyter-Spira C., Al-Babili S., Bouwmeester H.J.	Transcriptome analysis of the phosphate starvation response sheds light on strigolactone biosynthesis in rice.	Plant J.	114(2)	355-370	2023		
52694	36802875	Mutiga S.K., Orwa P., Nganga E.M., Kyallo M.M., Rotich F., Gichuhi E., Kimani J.M., Mwongera D.T., Were V.M., Yanoria M.J., Murori R., Mgonja E., Ziyomo C., Wasilwa L., Bachabi F., Ndjiondjop M.N., Ouedraogo I., Correll J.C., Talbot N.J.	Characterization of blast resistance in a diverse rice panel from sub-Saharan Africa.	Phytopathology			2023		
52695	36729358	Mmbando G.S., Ando S., Takahashi H., Hidema J.	High ultraviolet-B sensitivity due to lower CPD photolyase activity is needed for biotic stress response to the rice blast fungus, Magnaporthe oryzae.	Photochem. Photobiol. Sci.			2023		
52696	36765297	Xing P., Luo H., He Z., He L., Zhao H., Tang X., Duan M.	Trans-Zeatin induce regulation the biosynthesis of 2-acetyl-1-pyrroline in fragrant rice (Oryza sativa L.) seedlings.	BMC Plant Biol.	23(1)	88	2023		
52697	36840106	Sim J.E., Oh S.D., Kang K., Shin Y.M., Yun D.W., Baek S.H., Choi Y.E., Park S.U., Kim J.K.	Metabolite Profiling to Evaluate Metabolic Changes in Genetically Modified Protopanaxadiol-Enriched Rice.	Plants (Basel)	12(4)		2023		
52698	36427188	Courbier S.	Dimming the lights (and defenses): Dim light decreases rice resistance against brown plant hopper insects.	Plant Physiol.	191(2)	837-839	2023		
52699	36844905	Almeida O.A.C., de Araujo NO., Mulato A.T.N., Persinoti G.F., Sfor&#xe7;a ML., Calderan-Rodrigues MJ., Oliveira J.V.C.	Bacterial volatile organic compounds (VOCs) promote growth and induce metabolic changes in rice.	Front Plant Sci	13	1056082	2022		
52700	36781491	Pannak S., Wanchana S., Aesomnuk W., Pitaloka M.K., Jamboonsri W., Siangliw M., Meyers B.C., Toojinda T., Arikit S.	Functional Bph14 from Rathu Heenati promotes resistance to BPH at the early seedling stage of rice (Oryza sativa L.) as revealed by QTL-seq.	Theor. Appl. Genet.	136(2)	25	2023		
52701	36835475	Chen Y., Yang W., Gao R., Chen Y., Zhou Y., Xie J., Zhang F.	Genome-Wide Analysis of microRNAs and Their Target Genes in Dongxiang Wild Rice (<i>Oryza rufipogon</i> Griff.) Responding to Salt Stress.	Int J Mol Sci	24(4)		2023		
52702	36847862	Panda D., Mohanty S., Das S., Mishra B., Baig M.J., Behera L.	Light intensity-mediated auxin homeostasis in spikelets links carbohydrate metabolism enzymes with grain filling rate in rice.	Protoplasma			2023		
52703	36752880	Nguyen V.H., Morantte R.I.Z., Lopena V., Verdeprado H., Murori R., Ndayiragije A., Katiyar S.K., Islam M.R., Juma R.U., Flandez-Galvez H., Glaszmann J.C., Cobb J.N., Bartholom&#xe9; J.	Multi-environment Genomic Selection in Rice Elite Breeding Lines.	Rice (N Y)	16(1)	7	2023		
52704	36750954	Zhang X., Chen S., Zhao Z., Ma C., Liu Y.	Investigation of B-atp6-orfH79 distributing in Chinese populations of Oryza rufipogon and analysis of its chimeric structure.	BMC Plant Biol.	23(1)	81	2023		
52705	36660855	Xu Z., Zhang J., Wang X., Essemine J., Jin J., Qu M., Xiang Y., Chen W.	Cold-induced inhibition of photosynthesis-related genes integrated by a TOP6 complex in rice mesophyll cells.	Nucleic Acids Res.	51(4)	1823-1842	2023		
52706	36737003	Ishizaki T., Ueda Y., Takai T., Maruyama K., Tsujimoto Y.	In-frame mutation in rice TEOSINTE BRANCHED1 (OsTB1) improves productivity under phosphorus deficiency.	Plant Sci.	330	111627	2023		
52707	36835386	Li Y., Guo D.	Transcriptome and DNA Methylome Analysis of Two Contrasting Rice Genotypes under Salt Stress during Germination.	Int J Mol Sci	24(4)		2023	GD1,AMY1A,HKT7,DML3B,TA2	OsGD1, OsVAL1, VAL1, DLN186, OsDLN186,Amy1A/C*(RAmy1A/C), alpha Amy7, AMY1.1, Amy1A, RAmy1A/C, Amy1A/C*, Amy1, Amy1A_C, OsAmy1A, alphaAmy7-C, RAmy1A, AmyI-1, OsAmyI-1, OsRamy1A,OsHKT7, OsHKT1;4, HKT1;4,DML3b, OsDML3b,ROS1A, ROS1a, DME1, OsROS1A, OsROS1, ROS1, mOsROS1, ROS1A/DNG702, DNG702, OsDNG702
52708	36750679	Jaganathan D., Rajakani R., Doddamani D., Saravanan D., Pulipati S., Hari Sundar G V., Sellamuthu G., Jayabalan S., Kumari K., Parthasarathy P., S P., Ramalingam S., Shivaprasad P.V., Venkataraman G.	A conserved SNP variation in the pre-miR396c flanking region in Oryza sativa indica landraces correlates with mature miRNA abundance.	Sci Rep	13(1)	2195	2023		
52709	36835139	Nakano T., Crofts N., Miura S., Oitome N.F., Hosaka Y., Ishikawa K., Fujita N.	Three <i>Starch Synthase IIa</i> (<i>SSIIa</i>) Alleles Reveal the Effect of SSIIa on the Thermal and Rheological Properties, Viscoelasticity, and Eating Quality of Glutinous Rice.	Int J Mol Sci	24(4)		2023		
52710	36796171	Zhai S., Yang Y., Wu Y., Li J., Li Y., Wu G., Liang J., Gao H.	A visual CRISPR/dCas9-mediated enzyme-linked immunosorbent assay for nucleic acid detection with single-base specificity.	Talanta	257	124318	2023		
52711	36847100	He Y., Liu D., Shi Y., Guo B., Zhou L., Luo J., Zhang Z.	[Effect of VIT1/VIT2 overexpression on Fe and Cd accumulation in rice endosperm].	Sheng Wu Gong Cheng Xue Bao	39(2)	713-723	2023		
52712	36788431	Zhou S., Gao Q., Chen M., Zhang Y., Li J., Guo J., Lu J., Lou Y.	Silencing a dehydration-responsive element-binding gene enhances the resistance of plants to a phloem-feeding herbivore.	Plant Cell Environ.			2023		
52713	36710512	P&#xe9;lissier R., Ducasse A., Ballini E., Frouin J., Violle C., Morel J.B.	A major genetic locus in neighbours controls changes of gene expression and susceptibility in intraspecific rice mixtures.	New Phytol.	238(2)	835-844	2023		
52714	36835399	Gao P., Li M., Wang X., Xu Z., Wu K., Sun Q., Du H., Younas M.U., Zhang Y., Feng Z., Hu K., Chen Z., Zuo S.	Identification of Elite <i>R</i>-Gene Combinations against Blast Disease in <i>Geng</i> Rice Varieties.	Int J Mol Sci	24(4)		2023		
52715	36734269	Hong J., Su S., Wang L., Bai S., Xu J., Li Z., Betts N., Liang W., Wang W., Shi J., Zhang D.	Combined genome-wide association study and epistasis analysis reveal multifaceted genetic architectures of plant height in Asian cultivated rice.	Plant Cell Environ.	46(4)	1295-1311	2023		
52716	37119549	Lu S., Huo Z., Niu T., Zhu W., Wang J., Wu D., He C., Wang Y., Zou L., Sheng L.	Molecular mechanisms of toxicity and detoxification in rice (Oryza sativa L.) exposed to polystyrene nanoplastics.	Plant Physiol. Biochem.	199	107605	2023		
52717	36840246	Qiu L., Zhou P., Wang H., Zhang C., Du C., Tian S., Wu Q., Wei L., Wang X., Zhou Y., Huang R., Huang X., Ouyang X.	Photoperiod Genes Contribute to Daylength-Sensing and Breeding in Rice.	Plants (Basel)	12(4)		2023		
52718	36875723	da Mata CR., de Castro AP., Lanna A.C., Bortolini J.C., de Moraes MG.	Physiological and yield responses of contrasting upland rice genotypes towards induced drought.	Physiol Mol Biol Plants	29(2)	305-317	2023		
52719	36840127	Pancaldi F., van Loo EN., Senio S., Al Hassan M., van der Cruijsen K., Paulo M.J., Dolstra O., Schranz M.E., Trindade L.M.	Syntenic Cell Wall QTLs as Versatile Breeding Tools: Intraspecific Allelic Variability and Predictability of Biomass Quality Loci in Target Plant Species.	Plants (Basel)	12(4)		2023		
52720	36771750	Sanwong P., Sanitchon J., Dongsansuk A., Jothityangkoon D.	High Temperature Alters Phenology, Seed Development and Yield in Three Rice Varieties.	Plants (Basel)	12(3)		2023		
52721	36840275	Wang W., Qiu X., Wang Z., Xie T., Sun W., Xu J., Zhang F., Yu S.	Deciphering the Genetic Architecture of Color Variation in Whole Grain Rice by Genome-Wide Association.	Plants (Basel)	12(4)		2023		
52722	36836374	Solanki S., Lakshmi GBVS., Dhiman T., Gupta S., Solanki P.R., Kapoor R., Varma A.	Co-Application of Silver Nanoparticles and Symbiotic Fungus <i>Piriformospora indica</i> Improves Secondary Metabolite Production in Black Rice.	J Fungi (Basel)	9(2)		2023		
52723	36812722	Zhang Y., Ren Y., Yang D., Liu H., Zhang Y., Wang X., Bai F., Cheng S.	Foliar methyl jasmonate (MeJA) application increased 2-acetyl-1-Pyrroline (2-AP) content and modulated antioxidant attributes and yield formation in fragrant rice.	J. Plant Physiol.	282	153946	2023		
52724	36836855	Hussain S., Nanda S., Ashraf M., Siddiqui A.R., Masood S., Khaskheli M.A., Suleman M., Zhu L., Zhu C., Cao X., Kong Y., Jin Q., Zhang J.	Interplay Impact of Exogenous Application of Abscisic Acid (ABA) and Brassinosteroids (BRs) in Rice Growth, Physiology, and Resistance under Sodium Chloride Stress.	Life (Basel)	13(2)		2023		
52725	36705337	Zhang Q., Xie J., Zhu X., Ma X., Yang T., Khan N.U., Zhang S., Liu M., Li L., Liang Y., Pan Y., Li D., Li J., Li Z., Zhang H., Zhang Z.	Natural variation in tiller number 1 affects its interaction with TIF1 to regulate tillering in rice.	Plant Biotechnol. J.	21(5)	1044-1057	2023	LRA1,IBM2,PIN5B,CCA1,D14,D3,DLT,FC1,TIF1	OsPIN2, PIN2, OsLRA1, WAR1, OsWAR1,OsIBM2, TN1, OsTN1,PIN5C, OsPIN5c, OsPIN5b, PIN4,OsCCA1, OsLHY, LHY, LHY-like_chr.8, COC1, DLN203, OsDLN203, LEM1, OsLEM1, Nhd1, OsNhd1,d14(d10), dwf13, d10, d14, D88, HTD2, OsHTD2, OsD14, qPPB3, D88/D14, HTD4,d3, dwf3, D3/OsMAX2, Os_F0760, SOL1, OsORE9, ORE9, MAX2, OsRFPH2-10, RFPH2-10, OsD3,  OsFBL27, FBL27,dlt, OsGRAS32, OsDLT, OsDLT1, DTL1, OsGRAS-32, OsGRAS32, GRAS-32, GRAS32, SMOS2/DLT, SMOS2, OsSMOS2, OsGS6, GS6,fc1, OsTB1, tb1, OsTB1/FC1, Os TB1, TB1, OsFC1, MP3, OsMP3,OsTIF1
52726	36694306	Gan Q., Song F., Zhang C., Han Z., Teng B., Lin C., Gu D., Wang J., Pei H., Wu J., Fang J., Ni D.	Ca2+ deficiency triggers panicle degeneration in rice mediated by Ca2+ /H+ exchanger OsCAX1a.	Plant Cell Environ.	46(5)	1610-1628	2023		
52727	36812450	Zhang L., Miao J., Guo J., Liu J., Xia Z., Chen B., Ma F., Cao Y.	Two Novel Angiotensin I-Converting Enzyme (ACE) Inhibitory Peptides from Rice (<i>Oryza sativa L.</i>) Bran Protein.	J. Agric. Food Chem.	71(9)	4153-4162	2023		
52728	36840105	Zampieri E., Volante A., Mar&#xe8; C., Orasen G., Desiderio F., Biselli C., Canella M., Carmagnola L., Milazzo J., Adreit H., Tharreau D., Poncelet N., Vaccino P., Val&#xe8; G.	Marker-Assisted Pyramiding of Blast-Resistance Genes in a <i>japonica</i> Elite Rice Cultivar through Forward and Background Selection.	Plants (Basel)	12(4)		2023		
52729	36863686	Wu Y., Zhao Y., Yu J., Wu C., Wang Q., Liu X., Gao X., Wu K., Fu X., Liu Q.	Heterotrimeric G protein &#x3b3; subunit DEP1 synergistically regulates grain quality and yield by modulating the TTP (TON1-TRM-PP2A) complex in rice.	J Genet Genomics			2023		
52730	36842243	Romero-Munar A., Aroca R.	A non-K+-solubilizing PGPB (Bacillus megaterium) increased K+ deprivation tolerance in Oryza sativa seedlings by up-regulating root K+ transporters.	Plant Physiol. Biochem.	196	774-782	2023		
52731	36726089	Zheng X., Zhong L., Pang H., Wen S., Li F., Lou D., Ge J., Fan W., Wang T., Han Z., Qiao W., Pan X., Zhu Y., Wang J., Tang C., Wang X., Zhang J., Xu Z., Kim S.R., Kohli A., Ye G., Olsen K.M., Fang W., Yang Q.	Lost genome segments associate with trait diversity during rice domestication.	BMC Biol.	21(1)	20	2023		
52732	36840212	Tomita R., Reyes V.P., Fukuta Y., Gichuhi E.W., Kikuta M., Menge D.M., Doi K., Makihara D.	Genetic Variation of Blast (<i>Pyricularia oryzae</i> Cavara) Resistance in the Longistaminata Chromosome Segment Introgression Lines (LCSILs) and Potential for Breeding Use in Kenya.	Plants (Basel)	12(4)		2023		
52733	36417260	Zhang Y., Wang J., Li Y., Zhang Z., Yang L., Wang M., Zhang Y., Zhang J., Li C., Li L., Reynolds M.P., Jing R., Wang C., Mao X.	Wheat TaSnRK2.10 phosphorylates TaERD15 and TaENO1 and confers drought tolerance when overexpressed in rice.	Plant Physiol.	191(2)	1344-1364	2023		
52734	36843324	Zhou P., Wang Z., Zhu X., Tang Y., Ye L., Yu H., Li Y., Zhang N., Liu T., Wang T., Wu Y., Cao D., Chen Y., Li X., Zhang Q., Xiao J., Yu S., Zhang Q., Mi J., Ouyang Y.	A minimal genome design to maximally guarantee fertile inter-subspecific hybrid rice.	Mol Plant	16(4)	726-738	2023		
52735	36689326	Huang F., He N., Yu M., Li D., Yang D.	Identification and fine mapping of a new bacterial blight resistance gene, Xa43(t), in ZhangPu wild rice (Oryza rufipogon).	Plant Biol (Stuttg)	25(3)	433-439	2023		
52736	36729081	Shen E., Wang X., Lu Z., Zhou F., Ma W., Cui Z., Li Z., Li C., Lin Y.	Overexpression of a beta-1,6-glucanase gene GluM in transgenic rice confers high resistance to rice blast, sheath blight and false smut.	Pest Manag. Sci.	79(6)	2152-2162	2023		
52737	36774502	Redd P.S., Diaz S., Weidner D., Benjamin J., Hancock C.N.	Mobility of mPing and its associated elements is regulated by both internal and terminal sequences.	Mob DNA	14(1)	1	2023		
52738	36764267	Kumar V., Chaudhary P., Prasad A., Dogra V., Kumar A.	Jasmonic acid limits Rhizoctonia solani AG1-IA infection in rice by modulating reactive oxygen species homeostasis.	Plant Physiol. Biochem.	196	520-530	2023		
52739	36840122	Chuesaard T., Peankid P., Thaworn S., Jaradrattanapaiboon A., Veerana M., Panngom K.	Different Effects of Reactive Species Generated from Chemical Donors on Seed Germination, Growth, and Chemical Contents of <i>Oryza sativa</i> L.	Plants (Basel)	12(4)		2023		
52740	36775055	Yu F., Qi H., Gao L., Luo S., Njeri Damaris R., Ke Y., Wu W., Yang P.	Identifying RNA Modifications by Direct RNA Sequencing Reveals Complexity of Epitranscriptomic Dynamics in Rice.	Genomics, proteomics & bioinformatics			2023		
52741	36840221	Wang W., Huang R., Wu G., Sun J., Zhu Y., Wang H.	Transcriptomic and QTL Analysis of Seed Germination Vigor under Low Temperature in Weedy Rice WR04-6.	Plants (Basel)	12(4)		2023		
52742	36791391	&#xc1;lvarez-Mart&#xed;nez I., Ruprecht C., Senf D., Wang H.T., Urbanowicz B.R., Pfrengle F.	Chemo-Enzymatic Synthesis of Long-Chain Oligosaccharides for Studying Xylan-Modifying Enzymes.	Chemistry		e202203941	2023		
52743	36835485	Xu Y., Yan S., Jiang S., Bai L., Liu Y., Peng S., Chen R., Liu Q., Xiao Y., Kang H.	Identification of a Rice leaf width Gene <i>Narrow Leaf 22</i> (<i>NAL22</i>) through Genome-Wide Association Study and Gene Editing Technology.	Int J Mol Sci	24(4)		2023	CDC2-2,CDC2-1,NAL22	cdc2Os-2, CDC2Os-2, CDKA-2, CDKA;2, Orysa;CDKA;2, Rcdc2-2, OsCDKA;2, OsCDKA2, CDKA2, CDKA;1, OsCDKA;1, CDC20S-2, OsCDC20S-2,cdc2Os-1, CDC2Os-1, CDKA-1, CDKA;1, Orysa;CDKA;1, OsCDKA;1, cdc2Os1, Rcdc2-1, OsCDKA1, CDKA1, CDC20S-1, OsCDC20S-1 ,OsNAL22
52744	36759625	Huang H.J., Wang Y.Z., Li L.L., Lu H.B., Lu J.B., Wang X., Ye Z.X., Zhang Z.L., He Y.J., Lu G., Zhuo J.C., Mao Q.Z., Sun Z.T., Chen J.P., Li J.M., Zhang C.X.	Planthopper salivary sheath protein LsSP1 contributes to manipulation of rice plant defenses.	Nat Commun	14(1)	737	2023		
52745	36834586	Luan R., Liu J., Tao L., Fu G., Zhang C.	Comparative Transcriptome Analysis Reveals <i>OsBGs</i> and <i>OsGSLs</i> Influence Sugar Transport through Callose Metabolism under Heat Stress in Rice.	Int J Mol Sci	24(4)		2023		
52746	36835473	Qian G., Wang M., Wang X., Liu K., Li Y., Bu Y., Li L.	Integrated Transcriptome and Metabolome Analysis of Rice Leaves Response to High Saline-Alkali Stress.	Int J Mol Sci	24(4)		2023		
52747	36813851	Cheng Z., Zheng Q., Shi J., He Y., Yang X., Huang X., Wu L., Xu J.	Metagenomic and machine learning-aided identification of biomarkers driving distinctive Cd accumulation features in the root-associated microbiome of two rice cultivars.	ISME Commun	3(1)	14	2023		
52748	36796649	Babbar R., Tiwari L.D., Mishra R.C., Shimphrui R., Singh A.A., Goyal I., Rana S., Kumar R., Sharma V., Tripathi G., Khungar L., Sharma J., Agrawal C., Singh G., Biswas T., Biswal A.K., Sahi C., Sarkar N.K., Grover A.	Arabidopsis plants overexpressing additional copies of heat shock protein Hsp101 showed high heat tolerance and endo-gene silencing.	Plant Sci.	330	111639	2023		
52749	36764070	Zhao S., Zhang Q., Xiao W., Chen D., Hu J., Gao N., Huang M., Ye X.	Comparative transcriptomic analysis reveals the important process in two rice cultivars with differences in cadmium accumulation.	Ecotoxicol. Environ. Saf.	252	114629	2023		
52750	36835601	Gaba Y., Bhowal B., Pareek A., Singla-Pareek SL.	Genomic Survey of Flavin Monooxygenases in Wild and Cultivated Rice Provides Insight into Evolution and Functional Diversities.	Int J Mol Sci	24(4)		2023		
52751	36901925	Wang Z., Yang X., Zhou S., Zhang X., Zhu Y., Chen B., Huang X., Yang X., Zhou G., Zhang T.	The antigenic membrane protein (Amp) of Rice Orange Leaf Phytoplasma Suppresses Host Defenses and Is Involved in Pathogenicity.	Int J Mol Sci	24(5)		2023		
52752	37056426	Chen Z., Bu Q., Liu G., Wang M., Wang H., Liu H., Li X., Li H., Fang J., Liang Y., Teng Z., Kang S., Yu H., Cheng Z., Xue Y., Liang C., Tang J., Li J., Chu C.	Genomic decoding of breeding history to guide breeding-by-design in rice.	Natl Sci Rev	10(5)	nwad029	2023		
52753	36737006	Phetluan W., Wanchana S., Aesomnuk W., Adams J., Pitaloka M.K., Ruanjaichon V., Vanavichit A., Toojinda T., Gray J.E., Arikit S.	Candidate genes affecting stomatal density in rice (Oryza sativa L.) identified by genome-wide association.	Plant Sci.	330	111624	2023		
52754	36774536	Ma X., Jia Q., Li S., Chen Z., Ming X., Zhao Y., Zhou D.X.	An enhanced network of energy metabolism, lysine acetylation, and growth-promoting protein accumulation is associated with heterosis in elite hybrid rice.	Plant Commun		100560	2023		
52755	36835087	Yuan Q., Zhai Y., Zhou L., Ai X., Chen J., Yan F.	A Novel miRNA in Rice Associated with the Low Seed Setting Rate Symptom of Rice Stripe Virus.	Int J Mol Sci	24(4)		2023		
52756	36840239	Wang X., Li X., Luo X., Tang S., Wu T., Wang Z., Peng Z., Xia Q., Yu C., Xiao Y.	Identification, Fine Mapping and Application of Quantitative Trait Loci for grain shape Using Single-Segment Substitution Lines in Rice (<i>Oryza sativa</i> L.).	Plants (Basel)	12(4)		2023		
52757	36821070	Roy A., Reddy M.H., Sarkar M., Sagolsem D., Murmu S.K., Das C., Roy D., Ganguly S., Nath R., Bhattacharyya P.K., Sarker A., Bhattacharyya S.	A mis-splicing early flowering 3 (ELF3) allele of lentil is associated with yield enhancement under terminal heat stress.	J. Appl. Genet.	64(2)	265-273	2023		
52758	36628876	Wang L., Yao Y., Wang J., Cui J., Wang X., Li X., Li Y., Ma L.	Metabolomics analysis reveal the molecular responses of high CO2 concentration improve resistance to Pb stress of Oryza sativa L. seedlings.	Ecotoxicol. Environ. Saf.	251	114515	2023		
52759	36714775	Wang J., Qiu Y., Zhang X., Zhou Z., Han X., Zhou Y., Qin L., Liu K., Li S., Wang W., Chen Y., Yang J., Liu L.	Increasing basal nitrogen fertilizer rate improves grain yield, quality and 2-acetyl-1-pyrroline in rice under wheat straw returning.	Front Plant Sci	13	1099751	2022		
52760	37123833	Meng X., Bai S., Wang S., Pan Y., Chen K., Xie K., Wang M., Guo S.	The sensitivity of photosynthesis to magnesium deficiency differs between rice (<i>Oryza sativa</i> L.) and cucumber (<i>Cucumis sativus</i> L.).	Front Plant Sci	14	1164866	2023		
52761	36608134	Li Z., Wang B., Luo W., Xu Y., Wang J., Xue Z., Niu Y., Cheng Z., Ge S., Zhang W., Zhang J., Li Q., Chong K.	Natural variation of codon repeats in <i>COLD11</i> endows rice with chilling resilience.	Sci Adv	9(1)	eabq5506	2023	COLD11	OsRAD51A1, RAD51A1, OsCOLD11
52762	36675108	Gao S., Yang Y., Guo J., Zhang X., Feng M., Su Y., Que Y., Xu L.	Ectopic Expression of Sugarcane <i>ScAMT1.1</i> Has the Potential to Improve Ammonium Assimilation and grain yield in Transgenic Rice under Low Nitrogen Stress.	Int J Mol Sci	24(2)		2023		
52763	37089634	Wang X., Zhang X., Liu L., Liu X., Feng G., Wang J., Yin Y.A., Wei C.	Post-anthesis supplementary irrigation improves grain yield and nutritional quality of drip-irrigated rice (<i>Oryza sativa</i> L.).	Front Plant Sci	14	1126278	2023		
52764	36993861	Zhang H., Zhang X., Gao G., Ali I., Wu X., Tang M., Chen L., Jiang L., Liang T.	Effects of various seed priming on morphological, physiological, and biochemical traits of rice under chilling stress.	Front Plant Sci	14	1146285	2023		
52765	36968369	Abiraami T.V., Sanyal R.P., Misra H.S., Saini A.	Genome-wide analysis of bromodomain gene family in Arabidopsis and rice.	Front Plant Sci	14	1120012	2023	BRD13,BRDPG3C,MBD710,BRD3B,BRD1,BRD5A,BRD9,BRDPG3A,BRDPG3B,BRD5B,WD40-69,BRM,HAF701,BRDST1,BRD3A,BRD4A,BRDST3,BRD2,GTE4,BRD8,BRD12	OsBrd13, Brd13, OsCDC48-8, CDC48-8,OsBrdPG3c, BrdPG3c,OsDLN48, DLN48, OsMBD710, OsDLN47, DLN47, OsBrdST2, BrdST2,OsBrd3b, Brd3b,OsBrd1, Brd1,OsBrd5a, Brd5a,OsBrd9, Brd9,OsBrdPG3a, BrdPG3a,OsBrdPG3b, BrdPG3b,OsBrd5b, Brd5b,OsWD40-69, OsBrd6, Brd6,OsCHR707, CHR707, OsBRM, OsBrd11, Brd11,OsHAF701, OsBrd7, Brd7,OsBrdST1, BrdST1,OsBrd3a, Brd3a,OsBrd4a, Brd4a,OsBrdST3, BrdST3,OsBrd2, Brd2,OsGTE4, OsBrd4b, Brd4b,OsBrd8, Brd8,OsBrd12, Brd12
52766	36674611	Tyagi S., Kabade P.G., Gnanapragasam N., Singh U.M., Gurjar A.K.S., Rai A., Sinha P., Kumar A., Singh V.K.	Codon Usage Provide Insights into the Adaptation of Rice Genes under Stress Condition.	Int J Mol Sci	24(2)		2023		
52767	36714706	Wu X., Liu H., Lian B., Jiang X., Chen C., Tang T., Ding X., Hu J., Zhao S., Zhang S., Wu J.	Genome-wide analysis of epigenetic and transcriptional changes in the pathogenesis of RGSV in rice.	Front Plant Sci	13	1090794	2022		
52768	36995637	Lv J., Kelliher T.	Recent Advances in Engineering of In Vivo Haploid Induction Systems.	Methods Mol. Biol.	2653	365-383	2023		
52769	36724171	Ali Q., Yu C., Wang Y., Sheng T., Zhao X., Wu X., Jing L., Gu Q., Wu H., Gao X.	High killing rate of nematode and promotion of rice growth by synthetic volatiles from Bacillus strains due to enhanced oxidative stress response.	Physiol Plant	175(1)	e13868	2023		
52770	37075053		Retraction: Identification of C-T novel polymorphism in 3rd exon of OsSPL14 gene governing seed sequence in rice.	PLoS ONE	18(4)	e0284065	2023		
52771	36760644	Geng L., Zhang W., Zou T., Du Q., Ma X., Cui D., Han B., Zhang Q., Han L.	Integrating linkage mapping and comparative transcriptome analysis for discovering candidate genes associated with salt tolerance in rice.	Front Plant Sci	14	1065334	2023		
52772	36675168	Liu X., Deng X., Kong W., Sun T., Li Y.	The Pyramiding of Elite Allelic Genes Related to grain number Increases grain number per Panicle Using the Recombinant Lines Derived from <i>Indica-japonica</i> Cross in Rice.	Int J Mol Sci	24(2)		2023	GNP1,LAX1,HD5,OSH1,DST,PYL/RCAR4,PYL/RCAR13,SP1	GA20OX1, OsGA20ox1, 20ox1, GA20ox-1, ga20ox1, Os20ox, C20OX2, OsGA20ox2, OsGA20ox-1, GA20ox1, OsGNP1,lax, lax(lx), lx, OsbHLH123, bHLH123, OsLAX1, BOS1, OsBOS1,Hd5(t)*, Hd5, qHD5, HAP3H, OsHAP3H, NF-YB, CBF-A, DTH8 , qHD5(t)*, Ghd8, Ghd8/DTH8, Lhd1, NF-YB11, OsNF-YB11, NFYB11, LH8, DTH8/Ghd8, RH8, DTH8/Ghd8/LHD1, CAR8, DTH8/Ghd8/ OsHAP3H, EF8, OsEF8,OSKN1, Oskn1, OsKN1, OSH1/Oskn1, HB75,OsDST, DLN102, OsDLN102, HST1, OsHST1,OsPYL/RCAR4, PYL4, OsPYL4, OsPYL6, PYL6,OsPYL/RCAR1, PYL1, OsPYL1, OsPYL4, PYL4,sp, SP, OsNPF4.1, NPF4.1, OsSP1
52773	37063175	Wang W., Cheng M., Wei X., Wang R., Fan F., Wang Z., Tian Z., Li S., Yuan H.	Comprehensive evolutionary analysis of growth-regulating factor gene family revealing the potential molecular basis under multiple hormonal stress in <i>Gramineae</i> crops.	Front Plant Sci	14	1174955	2023		
52774	36647724	Liu S., Hou D., Vasupalli N., Lin X.	Overexpression of <i>PvSVP1</i>, an <i>SVP</i>-like gene of bamboo, causes early flowering and abnormal floral organs in <i>Arabidopsis</i> and rice.	Acta Biochim. Biophys. Sin. (Shanghai)	55(2)	237-249	2023		
52775	36675314	Li C.P., Wu D.H., Huang S.H., Meng M., Shih H.T., Lai M.H., Chen L.J., Jena K.K., Hechanova S.L., Ke T.J., Chiu T.Y., Tsai Z.Y., Chen G.K., Tsai K.C., Leu W.M.	The <i>Bph45</i> Gene Confers Resistance against Brown Planthopper in Rice by Reducing the Production of Limonene.	Int J Mol Sci	24(2)		2023	TPS20,BPH45,TPS19	OsTPS20, TPS41, OsTPS41,Bph45, OsBPH45,OsTPS19, TPS15, OsTPS15
52776	36699859	Lu S., Chen Y., Wang S., Han B., Zhao C., Xue P., Zhang Y., Fang H., Wang B., Cao Y.	Combined metabolomic and transcriptomic analysis reveals key components of <i>OsCIPK17</i> overexpression improves drought tolerance in rice.	Front Plant Sci	13	1043757	2022		
52777	36909427	Feng Y.X., Yang L., Lin Y.J., Song Y., Yu X.Z.	Merging the occurrence possibility into gene co-expression network deciphers the importance of exogenous 2-oxoglutarate in improving the growth of rice seedlings under thiocyanate stress.	Front Plant Sci	14	1086098	2023		
52778	37123839	Kim S.H., Yoon J., Kim H., Lee S.J., Kim T., Kang K., Paek N.C.	OsMYB7 determines leaf angle at the late developmental stage of lamina joints in rice.	Front Plant Sci	14	1167202	2023		
52779	36656825	Sugihara Y., Abe Y., Takagi H., Abe A., Shimizu M., Ito K., Kanzaki E., Oikawa K., Kourelis J., Langner T., Win J., Bia&#x142;as A., L&#xfc;dke D., Contreras M.P., Chuma I., Saitoh H., Kobayashi M., Zheng S., Tosa Y., Banfield M.J., Kamoun S., Terauchi R., Fujisaki K.	Disentangling the complex gene interaction networks between rice and the blast fungus identifies a new pathogen effector.	PLoS Biol.	21(1)	e3001945	2023		
52780	36875613	Wang H., Zhong L., Fu X., Huang S., Zhao D., He H., Chen X.	Physiological analysis reveals the mechanism of accelerated growth recovery for rice seedlings by nitrogen application after low temperature stress.	Front Plant Sci	14	1133592	2023		
52781	36911402	Biswas P.S., Ahmed M.M.E., Afrin W., Rahman A., Shalahuddin A.K.M., Islam R., Akter F., Syed M.A., Sarker M.R.A., Ifterkharuddaula K.M., Islam M.R.	Enhancing genetic gain through the application of genomic selection in developing irrigated rice for the favorable ecosystem in Bangladesh.	Front Genet	14	1083221	2023		
52782	36818881	Jiang H., Gao W., Jiang B.L., Liu X., Jiang Y.T., Zhang L.T., Zhang Y., Yan S.N., Cao J.J., Lu J., Ma C.X., Chang C., Zhang H.P.	Identification and validation of coding and non-coding RNAs involved in high-temperature-mediated seed dormancy in common wheat.	Front Plant Sci	14	1107277	2023		
52783	36719434	Wu X., Yuwen M., Pu Z., Zhao Z., Yu H., Zha J.	Engineering of flavonoid 3'-O-methyltransferase for improved biosynthesis of chrysoeriol in Escherichia coli.	Appl. Microbiol. Biotechnol.	107(5-6)	1663-1672	2023		
52784	36815980	Hassan H.M., Hadifa A.A., El-Leithy SA., Batool M., Sherif A., Al-Ashkar I., Ueda A., Rahman M.A., Hossain M.A., Elsabagh A.	Variable level of genetic dominance controls important agronomic traits in rice populations under water deficit condition.	PeerJ	11	e14833	2023		
52785	36938028	Padhan B.K., Sathee L., Kumar S., Chinnusamy V., Kumar A.	Variation in nitrogen partitioning and reproductive stage nitrogen remobilization determines nitrogen grain production efficiency (NUEg) in diverse rice genotypes under varying nitrogen supply.	Front Plant Sci	14	1093581	2023		
52786	37123816	Narawatthana S., Phansenee Y., Thammasamisorn B.O., Vejchasarn P.	Multi-model genome-wide association studies of leaf anatomical traits and vein architecture in rice.	Front Plant Sci	14	1107718	2023		
52787	36658612	Li H., Feng B., Li J., Fu W., Wang W., Chen T., Liu L., Wu Z., Peng S., Tao L., Fu G.	RGA1 alleviates low-light-repressed pollen tube elongation by improving the metabolism and allocation of sugars and energy.	Plant Cell Environ.	46(4)	1363-1383	2023		
52788	36830568	Mohapatra S., Barik S.R., Dash P.K., Lenka D., Pradhan K.C., Raj K R R., Mohanty S.P., Mohanty M.R., Sahoo A., Jena B.K., Panda A.K., Panigrahi D., Dash S.K., Meher J., Sahoo C.R., Mukherjee A.K., Das L., Behera L., Pradhan S.K.	Molecular Breeding for Incorporation of Submergence Tolerance and Durable Bacterial Blight Resistance into the Popular Rice Variety 'Ranidhan'.	Biomolecules	13(2)		2023		
52789	36771643	Ontoy J.C., Shrestha B., Karki H.S., Barphagha I., Angira B., Famoso A., Ham J.H.	Genetic Characterization of the Partial disease resistance of Rice to Bacterial Panicle Blight and Sheath Blight by Combined QTL Linkage and QTL-seq Analyses.	Plants (Basel)	12(3)		2023		
52790	37063192	Abd-El-Aty MS., Abo-Youssef MI., Bahgt M.M., Ibrahim O.M., Faltakh H., Nouri H., Korany S.M., Alsherif E.A., AbdElgawad H., El-Tahan AM.	Mode of gene action and heterosis for physiological, biochemical, and agronomic traits in some diverse rice genotypes under normal and drought conditions.	Front Plant Sci	14	1108977	2023		
52791	36603019	Maung P.P., Kim B., Jin Z., Jang S., Lee Y.K., Koh H.J.	Identification and characterization of a novel gene controlling floral organ number in rice (Oryza sativa L.).	PLoS ONE	18(1)	e0280022	2023	FON7	OsFON7
52792	36968360	Li G., Zhang T., Yang L., Qin J., Yang Q., Cao Y., Luo J., Li X., Gao L., Chen Q., He X., Huang Y., Liu C., He L., Zheng J., Jiang K.	Sterile line Dexiang074A enhances drought tolerance in hybrid rice.	Front Plant Sci	14	1054571	2023		
52793	36771574	Hasan S., Furtado A., Henry R.	Analysis of Domestication Loci in Wild Rice Populations.	Plants (Basel)	12(3)		2023		
52794	36771503	Wang N., Chen H., Qian Y., Liang Z., Zheng G., Xiang J., Feng T., Li M., Zeng W., Bao Y., Liu E., Zhang C., Xu J., Shi Y.	Genome-Wide Association Study of Rice grain shape and Chalkiness in a Worldwide Collection of Xian Accessions.	Plants (Basel)	12(3)		2023		
52795	37058514	Liu T., Bai L., Huang L., Mao D.	NP and 9311 are excellent population parents for screening QTLs of potassium-efficient rice.	PLoS ONE	18(4)	e0284510	2023		
52796	36691363	Panahabadi R., Ahmadikhah A., Farrokhi N.	Genetic dissection of monosaccharides contents in rice whole grain using genome-wide association study.	Plant Genome		e20292	2023		
52797	36818826	Zhao Q., Shi X.S., Wang T., Chen Y., Yang R., Mi J., Zhang Y.W., Zhang Y.M.	Identification of QTNs, QTN-by-environment interactions, and their candidate genes for grain size traits in main crop and ratoon rice.	Front Plant Sci	14	1119218	2023		
52798	36604385	Chithung T.A., Kansal S., Jajo R., Balyan S., Raghuvanshi S.	Understanding the evolution of miRNA biogenesis machinery in plants with special focus on rice.	Funct. Integr. Genomics	23(1)	30	2023		
52799	37089644	Zhang M., Zhao R., Huang K., Wei Z., Guo B., Huang S., Li Z., Jiang W., Wu T., Du X.	OsWRKY76 positively regulates drought stress <i>via</i> OsbHLH148-mediated jasmonate signaling in rice.	Front Plant Sci	14	1168723	2023		
52800	36690796	Li P., Ye S., Chen J., Wang L., Li Y., Ge L., Wu G., Song L., Wang C., Sun Y., Wang J., Pan A., Quan Z., Wu Y.	Combined metagenomic and metabolomic analyses reveal that Bt rice planting alters soil C-N metabolism.	ISME Commun	3(1)	4	2023		
52801	36838327	Patel A., Sahu K.P., Mehta S., Javed M., Balamurugan A., Ashajyothi M., Sheoran N., Ganesan P., Kundu A., Gopalakrishnan S., Gogoi R., Kumar A.	New Insights on Endophytic <i>Microbacterium</i>-Assisted blast disease Suppression and Growth Promotion in Rice: Revelation by Polyphasic Functional Characterization and Transcriptomics.	Microorganisms	11(2)		2023		
52802	36921192	Semeskandi M.N., Mazloom P., Arabzadeh B., Moghadam M.N., Ahmadi T.	Application of correlation coefficients and principal components analysis in stability of quantitative and qualitative traits on rice improvement cultivation.	Braz J Biol	84	e268981	2023		
52803	36844058	Dong J., Li X., Ma Y., Yang J., Chen J., Yang W., Zhou L., Wang J., Yang T., Zhang S., Zhao J., Liu Q., Zhou L., Zhu X., Liu B.	Overexpression of <i>OsGF14C</i> enhances salinity tolerance but reduces blast resistance in rice.	Front Plant Sci	14	1098855	2023		
52804	36679122	Zhang Y., Han S., Lin Y., Qiao J., Han N., Li Y., Feng Y., Li D., Qi Y.	Auxin Transporter OsPIN1b, a Novel Regulator of Leaf Inclination in Rice (<i>Oryza sativa</i> L.).	Plants (Basel)	12(2)		2023		
52805	36564987	Luo L., Xie Y., Yu S., Yang J., Chen S., Yuan X., Guo T., Wang H., Liu Y., Chen C., Xiao W., Chen Z.	The DnaJ domain-containing heat-shock protein NAL11 determines plant architecture by mediating gibberellin homeostasis in rice (Oryza sativa).	New Phytol.	237(6)	2163-2179	2023		
52806	36624071	Kovi B., Sakai T., Abe A., Kanzaki E., Terauchi R., Shimizu M.	Isolation of Pikps, an allele of Pik, from the aus rice cultivar Shoni.	Genes Genet. Syst.	97(5)	229-235	2023		
52807	36680595	Feng J., Li Z., Luo W., Liang G., Xu Y., Chong K.	COG2 negatively regulates chilling tolerance through cell wall components altered in rice.	Theor. Appl. Genet.	136(1)	19	2023	COG2	OsCOG2
52808	36710858	Huang X., Zheng D., Feng N., Huang A., Zhang R., Meng F., Jie Y., Mu B., Mu D., Zhou H.	Effects of prohexadione calcium spraying during the booting stage on panicle traits, yield, and related physiological characteristics of rice under salt stress.	PeerJ	11	e14673	2023		
52809	36875569	Lin F., Lin S., Zhang Z., Lin W., Rensing C., Xie D.	<i>GF14f</i> gene is negatively associated with yield and grain chalkiness under rice ratooning.	Front Plant Sci	14	1112146	2023		
52810	36592317	Yan F., Yu M., Wang M., Zhou H.	High-Throughput Base Editing-Mediated Artificial Evolution Streamlines Trait Gene Identification in Rice.	Methods Mol. Biol.	2606	191-202	2023		
52811	36674519	Kaur S., Seem K., Duhan N., Kumar S., Kaundal R., Mohapatra T.	Transcriptome and Physio-Biochemical Profiling Reveals Differential Responses of Rice Cultivars at Reproductive-Stage Drought Stress.	Int J Mol Sci	24(2)		2023		
52812	36930609	Zhang R., Zheng D., Feng N., Qiu Q.S., Zhou H., Meng F., Huang X., Huang A., Li Y.	Prohexadione-calcium alleviates the leaf and root damage caused by salt stress in rice (Oryza sativa L.) at the tillering stage.	PLoS ONE	18(3)	e0279192	2023		
52813	36635301	Tsakirpaloglou N., Bueno-Mota GM., Soriano J.C., Arcillas E., Arines F.M., Yu S.M., Stangoulis J., Trijatmiko K.R., Reinke R., Tohme J., Bouis H., Slamet-Loedin IH.	Proof of concept and early development stage of market-oriented high iron and zinc rice expressing dicot ferritin and rice nicotianamine synthase genes.	Sci Rep	13(1)	676	2023		
52814	37090105	Shan F., Wu Y., Du R., Yang Q., Liu C., Wang Y., Zhang C., Chen Y.	Evolutionary analysis of the OSCA gene family in sunflower (<i>Helianthus annuus L</i>) and expression analysis under NaCl stress.	PeerJ	11	e15089	2023		
52815	36698063	Chen F., Zhang H., Li H., Lian L., Wei Y., Lin Y., Wang L., He W., Cai Q., Xie H., Zhang H., Zhang J.	IPA1 improves drought tolerance by activating SNAC1 in rice.	BMC Plant Biol.	23(1)	55	2023		
52816	36897889	B J., Hosahatti R., Koti P.S., Devappa V.H., Ngangkham U., Devanna P., Yadav M.K., Mishra K.K., Aditya J.P., Boraiah P.K., Gaber A., Hossain A.	Phenotypic and Genotypic screening of fifty-two rice (Oryza sativa L.) genotypes for desirable cultivars against blast disease.	PLoS ONE	18(3)	e0280762	2023		
52817	36614255	Yang X., Lai Y., Wang L., Zhao M., Wang J., Li M., Chi L., Lv G., Liu Y., Cui Z., Li R., Wu L., Sun B., Zhang X., Jiang S.	Isolation of a Novel QTL, <i>qSCM4,</i> Associated with Strong Culm Affects Lodging Resistance and Panicle Branch Number in Rice.	Int J Mol Sci	24(1)		2023	NAL1	nal1, cul1, GPS, SPIKE, SPIKE/LSCHL4/NAL1/GPS, SPIKE/NAL1, LSCHL4, OsNAL1
52818	36798706	Tan Q., Chen S., Gan Z., Lu Q., Yan Z., Chen G., Lin S., Yang W., Zhao J., Ba Y., Zhu H., Bu S., Liu G., Liu Z., Wang S., Zhang G.	grain shape is a factor affecting the stigma exsertion rate in rice.	Front Plant Sci	14	1087285	2023		
52819	36640569	Thanwisai L., Janket A., Tran H.T.K., Siripornadulsil W., Siripornadulsil S.	Low Cd-accumulating rice grain production through inoculation of germinating rice seeds with a plant growth-promoting endophytic bacterium.	Ecotoxicol. Environ. Saf.	251	114535	2023		
52820	36968383	Wu M., Cai M., Zhai R., Ye J., Zhu G., Yu F., Ye S., Zhang X.	A mitochondrion-associated PPR protein, WBG1, regulates grain chalkiness in rice.	Front Plant Sci	14	1136849	2023	NAD1,FLO10	nad1, Osnad1, nadI, nadIB,OsFLO10, WBG1, OsWBG1
52821	36592290	Haque M.A., Rafii M.Y., Yusoff M.M., Ali N.S., Yusuff O., Arolu F., Anisuzzaman M.	Flooding tolerance in Rice: adaptive mechanism and marker-assisted selection breeding approaches.	Mol. Biol. Rep.	50(3)	2795-2812	2023		
52822	36677829	Miedzianka J., Walkowiak K., Zieli&#x144;ska-Dawidziak M., Zambrowicz A., Wolny S., Kita A.	The Functional and Physicochemical Properties of Rice Protein Concentrate Subjected to Acetylation.	Molecules	28(2)		2023		
52823	36771686	Taura S., Ichitani K.	Chromosomal Location of <i>xa19</i>, a Broad-Spectrum Rice Bacterial Blight Resistant Gene from XM5, a Mutant Line from IR24.	Plants (Basel)	12(3)		2023		
52824	36768538	Huang Z., Ye J., Zhai R., Wu M., Yu F., Zhu G., Wang Z., Zhang X., Ye S.	Comparative Transcriptome Analysis of the Heterosis of salt tolerance in Inter-Subspecific Hybrid Rice.	Int J Mol Sci	24(3)		2023		
52825	37035039	Cai Y.S., Cai J.L., Lee J.T., Li Y.M., Balladona F.K., Sukma D., Chan M.T.	<i>Arabidopsis AtMSRB5</i> functions as a salt-stress protector for both Arabidopsis and rice.	Front Plant Sci	14	1072173	2023		
52826	36602705	Ghosh P., Banerjee A., Roychoudhury A.	Dissecting the biochemical and molecular-genetic regulation of diverse metabolic pathways governing aroma formation in indigenous aromatic indica rice varieties.	Mol. Biol. Rep.	50(3)	2479-2500	2023		
52827	36683328	Sun H., Guo X., Zhu X., Gu P., Zhang W., Tao W., Wang D., Wu Y., Zhao Q., Xu G., Fu X., Zhang Y.	Strigolactone and gibberellin signaling coordinately regulate metabolic adaptations to changes in nitrogen availability in rice.	Mol Plant	16(3)	588-598	2023		
52828	36624579	Zou T., Li G., Liu M., Liu R., Yang S., Wang K., Lu L., Ye Q., Liu J., Liang J., Deng Q., Wang S., Zhu J., Liang Y., Liu H., Yu X., Sun C., Li P., Li S.	A Ubiquitin-specific protease functions in regulating cell death and immune responses in rice.	Plant Cell Environ.	46(4)	1312-1326	2023		
52829	36648593	Yang T., Gu H., Yang W., Liu B., Liang S., Zhao J.	Artificially Selected grain shape Gene Combinations in Guangdong Simiao Varieties of Rice (Oryza sativa L.).	Rice (N Y)	16(1)	3	2023		
52830	36778713	Tun W., Yoon J., Vo K.T.X., Cho L.H., Hoang T.V., Peng X., Kim E.J., Win KTYS., Lee S.W., Jung K.H., Jeon J.S., An G.	Sucrose preferentially promotes expression of <i>OsWRKY7</i> and <i>OsPR10a</i> to enhance defense response to blast fungus in rice.	Front Plant Sci	14	1117023	2023		
52831	36755700	Mahreen N., Yasmin S., Asif M., Yahya M., Ejaz K., Mehboob-Ur-Rahman, Yousaf S., Amin I., Zulfiqar S., Imran A., Khaliq S., Arif M.	Mitigation of water scarcity with sustained growth of Rice by plant growth promoting bacteria.	Front Plant Sci	14	1081537	2023		
52832	36765984	Fraiture M.A., D'aes J., Guiderdoni E., Meunier A.C., Delcourt T., Hoffman S., Vandermassen E., De Keersmaecker SCJ., Vanneste K., Roosens N.H.C.	Targeted High-Throughput Sequencing Enables the Detection of Single Nucleotide Variations in CRISPR/Cas9 Gene-Edited Organisms.	Foods	12(3)		2023		
52833	36614293	Tian Y., Zhou Y., Gao G., Zhang Q., Li Y., Lou G., He Y.	Creation of Two-Line Fragrant Glutinous Hybrid Rice by Editing the <i>Wx</i> and <i>OsBADH2</i> Genes via the CRISPR/Cas9 System.	Int J Mol Sci	24(1)		2023		
52834	36993845	Chen L., Yang Y., Zhao Z., Lu S., Lu Q., Cui C., Parry M.A.J., Hu Y.G.	Genome-wide identification and comparative analyses of key genes involved in C4 photosynthesis in five main gramineous crops.	Front Plant Sci	14	1134170	2023		
52835	36778152	Zhang R., Zheng D., Feng N., Qiu Q.S., Zhou H., Liu M., Li Y., Meng F., Huang X., Huang A., Li Y.	Prohexadione calcium enhances rice growth and tillering under NaCl stress.	PeerJ	11	e14804	2023		
52836	36829878	Lee K., Back K.	human Naa50 Shows Serotonin <i>N</i>-Acetyltransferase Activity, and Its Overexpression Enhances Melatonin Biosynthesis, Resulting in Osmotic Stress Tolerance in Rice.	Antioxidants (Basel)	12(2)		2023		
52837	36638797	Cai W., Hong J., Liu Z., Wang W., Zhang J., An G., Liang W., Persson S., Zhang D.	A receptor-like kinase controls the amplitude of secondary cell wall synthesis in rice.	Curr. Biol.	33(3)	498-506.e6	2023		
52838	36638605	Li M., Pan X., Li H.	RD29A promoter constitutively drives a rice Hd3a expression to promote early-flowering in Saussurea involucrate Kar. et Kir. ex Maxim.	Plant Physiol. Biochem.	195	155-162	2023		
52839	36768347	Tang J., Liu C., Tan Y., Jiang J., Chen F., Xiong G., Chen S.	Five Post-Translational Modification Residues of CmPT2 Play Key Roles in Yeast and Rice.	Int J Mol Sci	24(3)		2023		
52840	36968377	Kozyulina P.Y., Pavlova O.A., Kantsurova Rudaya ES., Bovin A.D., Shirobokova S.A., Dolgikh A.V., Dymo A.M., Dolgikh E.A.	Transcriptomic analysis of pea plant responses to chitooligosaccharides' treatment revealed stimulation of mitogen-activated protein kinase cascade.	Front Plant Sci	14	1092013	2023		
52841	36649757	Wang Y., Yi Y., Liu C., Zheng H., Huang J., Tian Y., Zhang H., Gao Q., Tang D., Lin J., Liu X.	Dephosphorylation of CatC at Ser-18 improves salt and oxidative tolerance via promoting its tetramerization in rice.	Plant Sci.	329	111597	2023		
52842	36826009	Xiong Q., Sun C., Wang R., Wang R., Wang X., Zhang Y., Zhu J.	The Key Metabolites in Rice Quality Formation of Conventional <i>japonica</i> Varieties.	Curr Issues Mol Biol	45(2)	990-1001	2023		
52843	37035051	Westerdahl B., Riddle L., Giraud D., Kamo K.	Field test of Easter lilies transformed with a rice cystatin gene for root lesion nematode resistance.	Front Plant Sci	14	1134224	2023		
52844	36703158	Wang J., Yang W., Zhang S., Hu H., Yuan Y., Dong J., Chen L., Ma Y., Yang T., Zhou L., Chen J., Liu B., Li C., Edwards D., Zhao J.	A pangenome analysis pipeline provides insights into functional gene identification in rice.	Genome Biol.	24(1)	19	2023		
52845	36756234	Tan L., Waqas M., Rehman A., Rashid M.A.R., Fiaz S., Manzoor H., Azeem F.	Computational analysis and expression profiling of potassium transport-related gene families in mango (<i>Mangifera indica</i>) indicate their role in stress response and fruit development.	Front Plant Sci	13	1102201	2022		
52846	37144919	Wairich A., Vitali A., Adamski J.M., Lopes K.L., Duarte G.L., Ponte L.R., Costa H.K., Menguer P.K., Santos R.P.D., Fett J.P., Sperotto R.A., Ricachenevsky F.K.	Enhanced expression of OsNAC5 leads to up-regulation of OsNAC6 and changes rice (Oryza sativa L.) ionome.	Genet. Mol. Biol.	46(1 Suppl 1)	e20220190	2023		
52847	36748269	Imran M., Shafiq S., Tang X.	CRISPR-Cas9-mediated editing of BADH2 gene triggered fragrance revolution in rice.	Physiol Plant	175(1)	e13871	2023		
52848	36633713	Mar&#xe8; C., Zampieri E., Cavallaro V., Frouin J., Grenier C., Courtois B., Brottier L., Tacconi G., Finocchiaro F., Serrat X., Nogu&#xe9;s S., Bund&#xf3; M., San Segundo B., Negrini N., Pesenti M., Sacchi G.A., Gavina G., Bovina R., Monaco S., Tondelli A., Cattivelli L., Val&#xe8; G.	Marker-Assisted Introgression of the Salinity Tolerance Locus Saltol in Temperate Japonica Rice.	Rice (N Y)	16(1)	2	2023		
52849	36959937	Sony S.K., Kaul T., Motelb K.F.A., Thangaraj A., Bharti J., Kaul R., Verma R., Nehra M.	CRISPR/Cas9-mediated homology donor repair base editing confers glyphosate resistance to rice (<i>Oryza sativa</i> L.).	Front Plant Sci	14	1122926	2023		
52850	36610008	Ning J., He W., Wu L., Chang L., Hu M., Fu Y., Liu F., Sun H., Gu P., Ndjiondjop M.N., Sun C., Zhu Z.	The MYB transcription factor Seed Shattering 11 controls seed Shattering by repressing lignin synthesis in African rice.	Plant Biotechnol. J.	21(5)	931-942	2023	BC1,ROMT9,CAD3,_,PAL1,SH11,GH2,PAL	bc1, bc-1, OsBC1, CWA1, FP1, OsPCS3, PCS3,COMT, OsCOMT, ROMT-9, OsCOMT1, OsCAldOMT1, CAldOMT1, OsOMT, OsCOMT15, COMT15,OsCAD3,ONAC007, ONAC7, OsSND1, SND1, OsSWN1, SWN1, DLN157, OsDLN157,OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6,OsJAmyb, JAmyb, OsJAMyb, OsMYB21, MYB21, Os2R_MYB91, 2R_MYB91, OgSH11, OsSH11,gh2, CAD2, CAD, OsCAD2, OsGH2 ,OsPAL, OsPAL08, PAL2, GP-28, GP28, PAL08, OsPAL2, OsPAL8, PAL8
52851	36821566	Feng D., Gao Q., Sun X., Ning S., Qi N., Hua Z., Tang J.	Effects of foliage-applied exogenous &#x3b3;-aminobutyric acid on seedling growth of two rice varieties under salt stress.	PLoS ONE	18(2)	e0281846	2023		
52852	36710151	Ren D., Ding C., Qian Q.	Molecular bases of rice grain size and quality for optimized productivity.	Science Bulletin	68(3)	314-350	2023		
52853	36798712	Ding Y., Zhou M., Wang K., Qu A., Hu S., Jiang Q., Yi K., Wang F., Cai C., Zhu C., Chen Z.	Rice DST transcription factor negatively regulates heat tolerance through ROS-mediated stomatal movement and heat-responsive gene expression.	Front Plant Sci	14	1068296	2023	HSP26,HSP16.9B,HSP58.7,PRX24,HSP74.8,DST,HSP24.1	OsHSP26, Oshsp26, OsHSP26.7, HSP26.7,Oshsp16.9B, OsHsp16.9B, HSP16.9B, OsHsp17.0, OsHSP16.9B-CI, OsHSP17.0, Hsp17.0, OsSHSP2, OsSTA3,OsHsp58.7, OsHSP58.7, OsISC25, ISC25,prx24, Osprx24,OsHsp74.8, OsHSP74.8,OsDST, DLN102, OsDLN102, HST1, OsHST1,OsHsp24.1, OsHSP24.1
52854	37063194	Shen R., Yao Q., Zhong D., Zhang X., Li X., Cao X., Dong C., Tian Y., Zhu J.K., Lu Y.	Targeted insertion of regulatory elements enables translational enhancement in rice.	Front Plant Sci	14	1134209	2023		
52855	36694135	Lou D., Lu S., Chen Z., Lin Y., Yu D., Yang X.	Molecular characterization reveals that OsSAPK3 improves drought tolerance and grain yield in rice.	BMC Plant Biol.	23(1)	53	2023	BZIP23,SOD4,MIS2,P5CS,SLAC1,ABI5,SAPK3,GIF1,NOE1,APX2,SODCC1,SLAC7	OsbZIP23, OsAREB1, OsABF2, Osbzip23, OsAREB2, OsZIP23, ZIP23,OsSOD4, OsCSD4, OsCu/Zn-SOD1, Cu/Zn-SOD1, OsCSD2, CSD2, OsSOD4-Cu/Zn, SOD4-Cu/Zn, Cu/ZnSOD3, CuZnSOD3, sodCp, OssodCp, OsCu/ZnSOD3, CuZnSOD2, OsSOD1,OsCR4, CR4, OsMIS2,OsP5CS, P5CS1, OsP5CS1, OsALDH18B1, ALDH18B1, OsP5CS-1, P5CS-1,OsSLAC1, OsSLAH1, SLAH1,OsABI5, OsbZIP10, OsABF1, OREB1, OsABI5-1, OsABI5-2, OsOREB1, OREB1 ,OsSAPK3, REK, OsSnRK2.3, SnRK2.3,gif1, CIN2, OsCIN2, OsGIF1, WB1, OsWB1, GIF1/OsCIN2,CATC, OsCat, OsCatC, OsCATC, OsNOE1, noe1, catC, OsCATC, CAT3, OsCAT3, LLM9428, OsLLM9428,OsAPX2, OsAPx02, APXb, OsAPx2, OSAPX2, APx2, cAPX, OsAPX1, APX1,sodCc1, SODCC.1, sodA, RSODA, OsSOD1, OsCSD2, OsSodA, SodCc2, OsSODA1, SODCc1-Cu/Zn, OsCu/Zn-SOD2, Cu/Zn-SOD2, OsCSD1.2, CSD1.2, OsSODCc1-Cu/Zn, SODCc1-Cu/Zn, CuZnSOD1, Cu/ZnSOD1, OsCu/ZnSOD1, OsCSD4, CDS4, CuZnSOD4, OsCuZnSOD1, OsCSD1, CSD1, OsSOD2,OsSLAC7
52856	37035067	Palanog A.D., Nha C.T., Descalsota-Empleo GIL., Calayugan M.I., Swe Z.M., Amparado A., Inabangan-Asilo MA., Hernandez J.E., Sta Cruz PC., Borromeo T.H., Lalusin A.G., Mauleon R., McNally K.L., Swamy B.P.M.	Molecular dissection of connected rice populations revealed important genomic regions for agronomic and biofortification traits.	Front Plant Sci	14	1157507	2023		
52857	36616346	Yongbin Q., Summat P., Panyawut N., Sikaewtung K., Ditthab K., Tongmark K., Chakhonkaen S., Sangarwut N., Wasinanon T., Kaewmungkun K., Muangprom A.	Identification of Rice Accessions Having cold tolerance at the Seedling Stage and Development of Novel Genotypic Assays for Predicting cold tolerance.	Plants (Basel)	12(1)		2023		
52858	37051081	Stephen K., Aparna K., Beena R., Sah R.P., Jha U.C., Behera S.	Identification of simple sequence repeat markers linked to heat tolerance in rice using bulked segregant analysis in F2 population of NERICA-L 44 &#xd7; Uma.	Front Plant Sci	14	1113838	2023		
52859	36938029	Tran L.H., Kim J.G., Jung S.	Expression of the Arabidopsis Mg-chelatase H subunit alleviates iron deficiency-induced stress in transgenic rice.	Front Plant Sci	14	1098808	2023		
52860	36968393	Lei L., Cao L., Ding G., Zhou J., Luo Y., Bai L., Xia T., Chen L., Wang J., Liu K., Lei Q., Xie T., Yang G., Wang X., Sun S., Lai Y.	<i>OsBBX11</i> on <i>qSTS4</i> links to salt tolerance at the seeding stage in <i>Oryza sativa</i> L. ssp. <i>Japonica</i>.	Front Plant Sci	14	1139961	2023		
52861	36968399	Kumari A., Sharma D., Sharma P., Wang C., Verma V., Patil A., Imran M., Singh M.P., Kumar K., Paritosh K., Caragea D., Kapoor S., Chandel G., Grover A., Jagadish S.V.K., Katiyar-Agarwal S., Agarwal M.	Meta-QTL and haplo-pheno analysis reveal superior haplotype combinations associated with low grain chalkiness under high temperature in rice.	Front Plant Sci	14	1133115	2023		
52862	36597029	Hanlon M.T., Vejchasarn P., Fonta J.E., Schneider H.M., McCouch S.R., Brown K.M.	Genome wide association analysis of root hair traits in rice reveals novel genomic regions controlling epidermal cell differentiation.	BMC Plant Biol.	23(1)	6	2023		
52863	36616305	Bakshi A., Moin M., Gayatri M.B., Reddy A.B.M., Datla R., Madhav M.S., Kirti P.B.	Involvement of Target of Rapamycin (TOR) Signaling in the Regulation of Crosstalk between Ribosomal Protein Small Subunit 6 Kinase-1 (RPS6K-1) and Ribosomal Proteins.	Plants (Basel)	12(1)		2023	RPS28 ,RPL51,RPL6,RPS3AC,RPS27,RPL23E,RPL36.2,BIP123,_,RPS6A,UBQ5,RPS25,RPL38,RPL18A,RPL4,_,RPS6E,RPS30,RPL18A,_,_,RPL23A,RPL30E,_	OsRPS28, OsRPS28e, RPS28e,OsRPL51,OsRPL6,RPS3a, Os RPS3a, RPS3aC, OsRPS3aC,OsRPS27,OsRPL23e, OsRPL23B, RPL23B,OsRPL36.2,OsBIP123, RPL24a, OsRPL24a, RPL24B, OsRPL24B,OsRPL24B, RPL24B,RPS6, RPS6a, OsRPS6A, OsRPS6, OsRPS6a,RPS27a, OsUBQ5, OsRPS27a,RPS25, RPS25a, OsRPS25, OsRPS25a ,OsRPL38, RPL38A, OsRPL38A,OsRPL18A,OsRPL4,OsRPL14, RPL14,OsRPS6e,OsRPS30,rpl18a, RPL18a, OsRPL18a,OsRPL24A, RPL24A,OsRPL24A, RPL24A,OsRPL23, OsRPL23A, RPL23,OsRPL30e, RPL30e,OsRPL24B, RPL24B
52864	36946787	Ahmad T.M., Haider M.S., Randhir T.O., Randhir R., Ahmad S.R.	Spatial analysis of factors influencing bacterial leaf blight in rice production.	Braz J Biol	83	e264249	2023		
52865	36993856	Song X., Chen Z., Du X., Li B., Fei Y., Tao Y., Wang F., Xu Y., Li W., Wang J., Liang G., Zhou Y., Tan X., Li Y., Yang J.	Generation of new rice germplasms with low amylose content by CRISPR/Cas9-targeted mutagenesis of the <i>FLOURY ENDOSPERM 2</i> gene.	Front Plant Sci	14	1138523	2023		
52866	36366828	Wang X., Xu Q., Hu K., Wang G., Shi K.	A Coculture of <i>Enterobacter</i> and <i>Comamonas</i> Species Reduces Cadmium Accumulation in Rice.	Mol. Plant Microbe Interact.	36(2)	95-108	2023		
52867	36633167	Chen H., Lin Q., Li Z., Chu J., Dong H., Mei Q., Xuan Y.	Calcineurin B-like interacting protein kinase 31 confers resistance to sheath blight via modulation of ROS homeostasis in rice.	Mol. Plant Pathol.	24(3)	221-231	2023		
52868	37089655	Sun C., Wang R., Tang G., Cai S., Shi H., Liu F., Xie H., Zhu J., Xiong Q.	Integrated 16S and metabolomics revealed the mechanism of drought resistance and nitrogen uptake in rice at the heading stage under different nitrogen levels.	Front Plant Sci	14	1120584	2023		
52869	36699836	Hossain M.K., Islam M.R., Sundaram R.M., Bhuiyan M.A.R., Wickneswari R.	Introgression of the QTL <i>qSB11-1TT</i> conferring sheath blight resistance in rice (<i>Oryza sativa</i>) into an elite variety, UKMRC 2, and evaluation of its backcross-derived plants.	Front Plant Sci	13	981345	2022		
52870	36726666	Yin W., Lu T., Chen Z., Lu T., Ye H., Mao Y., Luo Y., Lu M., Zhu X., Yuan X., Rao Y., Wang Y.	Quantitative trait locus mapping and candidate gene analysis for salt tolerance at bud stage in rice.	Front Plant Sci	13	1041081	2022		
52871	36873055	Zafar K., Khan M.Z., Amin I., Mukhtar Z., Zafar M., Mansoor S.	Employing template-directed CRISPR-based editing of the <i>OsALS</i> gene to create herbicide tolerance in Basmati rice.	AoB Plants	15(2)	plac059	2023		
52872	36909446	Jiang S., Zhang X., Yang X., Liu C., Wang L., Ma B., Miao Y., Hu J., Tan K., Wang Y., Jiang H., Wang J.	A chromosome-level genome assembly of an early matured aromatic <i>Japonica</i> rice variety Qigeng10 to accelerate rice breeding for high grain quality in Northeast China.	Front Plant Sci	14	1134308	2023		
52873	37051083	He A., Jiang M., Nie L., Man J., Peng S.	Effects of source-sink regulation and nodal position of the main crop on the sprouting of regenerated buds and grain yield of ratoon rice.	Front Plant Sci	14	1043354	2023		
52874	36678963	Gunasekaran A., Seshadri G., Ramasamy S., Muthurajan R., Karuppasamy K.S.	Identification of Newer Stable Genetic Sources for High Grain number per Panicle and Understanding the Gene Action for Important Panicle Traits in Rice.	Plants (Basel)	12(2)		2023		
52875	36960288	Zeng Q., Man X., Huang Z., Zhuang L., Yang H., Sha Y.	Effects of rice blast biocontrol strain <i>Pseudomonas alcaliphila</i> Ej2 on the endophytic microbiome and proteome of rice under salt stress.	Front Microbiol	14	1129614	2023		
52876	36617358	Chanda Roy P., Chowdhary G.	Molecular cloning of glutathione reductase from Oryza sativa, demonstrating its peroxisomal localization and upregulation by abiotic stresses.	Acta Biochim. Pol.	70(1)	175-181	2023		
52877	36909447	Zhi S., Zou W., Li J., Meng L., Liu J., Chen J., Ye G.	Mapping QTLs and gene validation studies for Mg2+ uptake and translocation using a MAGIC population in rice.	Front Plant Sci	14	1131064	2023		
52878	36597711	Wang J., Xu J., Wang L., Zhou M., Nian J., Chen M., Lu X., Liu X., Wang Z., Cen J., Liu Y., Zhang Z., Zeng D., Hu J., Zhu L., Dong G., Ren D., Gao Z., Shen L., Zhang Q., Li Q., Guo L., Yu S., Qian Q., Zhang G.	SEMI-rolled leaf 10 stabilizes catalase isozyme B to regulate leaf morphology and thermotolerance in rice (Oryza sativa L.).	Plant Biotechnol. J.	21(4)	819-838	2023	RL89,CATB	OsDRB2, DRB2, OsRL89, SRL10, OsSRL10,CatB, CAT-B, OsCatB, OsCATB, OsCAT1B, CAT1B, CAT2, OsCAT2
52879	36704350	Wang J., Su C., Cui Z., Huang L., Gu S., Jiang S., Feng J., Xu H., Zhang W., Jiang L., Zhao M.	Transcriptomics and metabolomics reveal tolerance new mechanism of rice roots to Al stress.	Front Genet	13	1063984	2022		
52880	37018326	Chen L., Liu J., He S., Cao L., Ye G.	Genomic prediction of rice mesocotyl length indicative of directing seeding suitability using a half-sib hybrid population.	PLoS ONE	18(4)	e0283989	2023		
52881	36377808	Tripathi D.K., Kandhol N., Rai P., Mishra V., Pandey S., Deshmukh R., Sahi S., Sharma S., Singh V.P.	Ethylene Renders Silver Nanoparticles Stress Tolerance in Rice Seedlings by Regulating Endogenous Nitric Oxide Accumulation.	Plant Cell Physiol.	63(12)	1954-1967	2023		
52882	36908821	Pan X., Li Y., Li X.	Quantitative trait loci associated with straighthead-resistance used for marker assisted selection in rice (<i>Oryza sativa</i> L.) RIL populations.	PeerJ	11	e14866	2023		
52883	36824199	Yamamoto E., Yabe S., Inari-Ikeda M., Yoshida H., Morinaka Y., Matsuoka M., Kitano H.	Independent control of organ number and distribution pattern in rice panicle.	Front Plant Sci	14	1119770	2023		
52884	36639045	Zhou P., Zhang P., He M., Cao Y., Adeel M., Shakoor N., Jiang Y., Zhao W., Li Y., Li M., Azeem I., Jia L., Rui Y., Ma X., Lynch I.	Iron-based nanomaterials reduce cadmium toxicity in rice (Oryza sativa L.) by modulating phytohormones, phytochelatin, cadmium transport genes and iron plaque formation.	Environ. Pollut.	320	121063	2023		
52885	36739690	Wang G., Li J., Ji J., Zhang L., Li B., Zhang J., Wang X., Song W., Guan C.	Combined application of allantoin and strain JIT1 synergistically or additively promotes the growth of rice under 2, 4-DCP stress by enhancing the phosphate solubility, improving soil enzyme activities and photosynthesis.	J. Plant Physiol.	282	153941	2023		
52886	36959941	AbdElgawad H., Mohammed A.E., van Dijk JR., Beemster G.T.S., Alotaibi M.O., Saleh A.M.	The impact of chromium toxicity on the yield and quality of rice grains produced under ambient and elevated levels of CO2.	Front Plant Sci	14	1019859	2023		
52887	37035075	Chen J., Xuan Y., Yi J., Xiao G., Yuan P., Li D.	Progress in rice sheath blight resistance research.	Front Plant Sci	14	1141697	2023		
52888	36679018	Nascimento F.D.S., Rocha A.J., Soares JMDS., Mascarenhas M.S., Ferreira M.D.S., Morais Lino LS., Ramos A.P.S., Diniz L.E.C., Mendes T.A.O., Ferreira C.F., Santos-Serejo JAD., Amorim E.P.	Gene Editing for Plant Resistance to Abiotic Factors: A Systematic Review.	Plants (Basel)	12(2)		2023		
52889	37063174	Zhang L., Li S., Shan C., Liu Y., Zhang Y., Ye L., Lin Y., Xiong G., Ma J., Adnan M., Shi X., Sun X., Kuang W., Cui R.	Integrated transcriptome and metabolome analysis revealed that flavonoids enhanced the resistance of <i>Oryza sativa</i> against <i>Meloidogyne graminicola</i>.	Front Plant Sci	14	1137299	2023		
52890	36660888	Wang Y., Yang Z., Xing M., Huang J., Ding Y., Zhang L., Li F., Nie Y., Wang S., Li Y., Zhao M., Ge J., Lou D., Liu Z., Fan W., Guo W., Zheng X., Qian Q., Yang Q., Qiao W.	A novel QTL GL12 from wild rice increases grain length and weight in cultivated rice.	Plant Biotechnol. J.			2023		
52891	36333887	Yang H., Wang Y., Tian Y., Teng X., Lv Z., Lei J., Duan E., Dong H., Yang X., Zhang Y., Sun Y., Chen X., Bao X., Chen R., Gu C., Zhang Y., Jiang X., Ma W., Zhang P., Ji Y., Zhang Y., Wang Y., Wan J.	Rice FLOURY ENDOSPERM22, encoding a pentatricopeptide repeat protein, is involved in both mitochondrial RNA splicing and editing and is crucial for endosperm development.	J Integr Plant Biol	65(3)	755-771	2023	PLS26,PLS6,PLS24,PLS2,DYW1,PLS4,PLS12,PLS37,DYW2,PLS1,PLS35,PLS5,PLS8,PLS34,PLS11,PLS3,PLS23,PLS18,PLS13,DYW6,DYW4,PLS19,PLS7,PLS17,PLS29,PLS36,PLS25,PLS33,PLS30,DYW3,PLS21,DYW5,PLS28,TPR92,PLS14,PLS9,PLS27,RF1,PLS16,SPED1,FLO22,PLS10,PLS32,PLS20	OsPLS26,OsPLS6,OsPLS24,OsPLS2,OsDYW1,OsPLS4,OsPLS12,OsPLS37,OsDYW2,OsPLS1,OsPLS35,OsPLS5,OsPLS8,PPR, OsPLS34,OsPLS11,OsPLS3,OsPLS23,OsPLS18,OsPLS13,OsDYW6,OsDYW4,OsPLS19,OsPLS7,OsPLS17,OsPLS29,OsPLS36,OsPLS25,OsPLS33,OsPLS30,OsDYW3,OsPLS21,OsDYW5,OsPLS28,OsTPR092, TPR092, OsTPR92, PLS15, OsPLS15,OsPLS14,OsPLS9,OsPLS27,Rf1 (Rf-1), rf-1, PPR791, PPR8-1, Rf-1, Rf1, Rf-1A, Rf5, Rf1a, RF5, Rf5(t)*(Rf(t)*), RF1A, PPR6, PLS31, OsPLS31,OsPLS16,OsSPED1, PLS22, OsPLS22,OsFLO22,OsPLS10,OsPLS32,OsPLS20
52892	36743495	Caddell D., Langenfeld N.J., Eckels M.J., Zhen S., Klaras R., Mishra L., Bugbee B., Coleman-Derr D.	Photosynthesis in rice is increased by CRISPR/Cas9-mediated transformation of two truncated light-harvesting antenna.	Front Plant Sci	14	1050483	2023	YGL138,CPSRP54B,YGL9	YGL138(t), SRP54, OsSRP54, OscpSRP54a, cpSRP54a, PGL14, OsPGL1, PGL1,OscpSRP54b, cpSRP54b,OscpSRP43, cpSRP43, PGL3, OsPGL3, Os YGL9
52893	37064279	Musa S.I., Ikhajiagbe B.	Seed bio-priming with phosphate-solubilizing bacteria strains to improve rice (<i>Oryza sativa</i> L. var. FARO 44) growth under ferruginous ultisol conditions.	BioTechnologia (Pozn)	104(1)	33-51	2023		
52894	36692673	Wang Y., Yang X., Xu G., Ye X., Ji Y., Lou X., Su J., Sun C., Fu Y., Zhang K.	Mapping quantitative trait loci associated with callus browning in Dongxiang common wild rice (Oryza rufipogon Griff.).	Mol. Biol. Rep.	50(4)	3129-3140	2023		
52895	36875592	Dang X., Jing C., Zhang M., Li X., Xu Q., Hu C., Li Y., Zhang Y., Wang D., Hong D., Jiang J.	A new allele <i>PEL9</i> GG identified by genome-wide association study increases panicle elongation length in rice (<i>Oryza sativa</i> L.).	Front Plant Sci	14	1136549	2023	PEL9	OsLDOX6, LDOX6, OsPEL9
52896	37123865	Huo X., Wang J., Chen L., Fu H., Yang T., Dong J., Ma Y., Zhou L., Chen J., Liu D., Liu B., Zhao J., Zhang S., Yang W.	Genome-wide association mapping and gene expression analysis reveal candidate genes for grain chalkiness in rice.	Front Plant Sci	14	1184276	2023		
52897	36426878	Zhang M., Wang Y., Hu Y., Wang H., Liu Y., Zhao B., Zhang J., Fang R., Yan Y.	Heterosis in root microbiota inhibits growth of soil-borne fungal pathogens in hybrid rice.	J Integr Plant Biol	65(4)	1059-1076	2023		
52898	36693603	Yang X., Niu X., Li L., Wang L., Liu C., Liu J., Yuan Q., Pei X.	Understanding the molecular mechanism of drought resistance in Shanlan upland rice by transcriptome and phenotype analyses.	Int. J. Biol. Macromol.	231	123387	2023		
52899	36704163	Zhao J., Yu B., Wang X., Chen L., Akhtar K., Tang S., Lu H., He J., Wen R., He B.	Differences in the response mechanism of cadmium uptake, transfer, and accumulation of different rice varieties after foliar silicon spraying under cadmium-stressed soil.	Front Plant Sci	13	1064359	2022		
52900	36938064	Shinde H., Dudhate A., Kadam U.S., Hong J.C.	RNA methylation in plants: An overview.	Front Plant Sci	14	1132959	2023		
52901	36777025	Santra H.K., Banerjee D.	Drought alleviation efficacy of a galactose rich polysaccharide isolated from endophytic <i>Mucor</i> sp. HELF2: A case study on rice plant.	Front Microbiol	13	1064055	2022		
52902	36756226	Kumar R., Ghatak A., Goyal I., Sarkar N.K., Weckwerth W., Grover A., Chaturvedi P.	Heat-induced proteomic changes in anthers of contrasting rice genotypes under variable stress regimes.	Front Plant Sci	13	1083971	2022		
52903	36577688	Li X., Lei C., Song Q., Bai L., Cheng B., Qin K., Li X., Ma B., Wang B., Zhou W., Chen X., Li J.	Chemoproteomic profiling of O-GlcNAcylated proteins and identification of O-GlcNAc transferases in rice.	Plant Biotechnol. J.	21(4)	742-753	2023		
52904	36674482	He N., Huang F., Yang D.	Fine Mapping and Cloning of a <i>qRA2</i> Affect the ratooning ability in Rice (<i>Oryza sativa</i> L.).	Int J Mol Sci	24(2)		2023	UGT3	qRA2, OsUGT3
52905	37008461	Zhou X., Xie W., Jing H., Fu J., Li M., Bian J., Xu J., Cai Y., He H., Zhou D.	Analysis of anthocyanins and total flavonoids content in functional rice and its recombination inbred lines.	Front Plant Sci	14	1113618	2023		
52906	36668797	Liu S., Fu L., Zhang C., Deng J., Xue W., Deng Y.	Effects of Exogenous Chlorinated Amino Acetic Acid on Cadmium and Mineral Elements in Rice Seedlings.	Toxics	11(1)		2023		
52907	36622503	Xue R., Li Q., Guo R., Yan H., Ju X., Liao L., Zeng R., Song Y., Wang J.	Rice Defense Responses Orchestrated by Oral Bacteria of the Rice Striped Stem Borer, Chilo suppressalis.	Rice (N Y)	16(1)	1	2023		
52908	36705856	Chigira K., Yamasaki M., Adachi S., Nagano A.J., Ookawa T.	Identification of Novel Quantitative Trait Loci for Culm Thickness of Rice Derived from Strong-Culm Landrace in Japan, Omachi.	Rice (N Y)	16(1)	4	2023		
52909	36771569	Aimvijarn P., Payuhakrit W., Charoenchon N., Okada S., Suwannalert P.	Riceberry Rice Germination and UVB Radiation Enhance Protocatechuic Acid and Vanillic Acid to Reduce Cellular oxidative stress and Suppress B16F10 Melanogenesis Relating to F-Actin Rearrangement.	Plants (Basel)	12(3)		2023		
52910	36562612	Thiers K.L.L., da Silva JHM., Vasconcelos D.C.A., Aziz S., Noceda C., Arnholdt-Schmitt B., Costa J.H.	Polymorphisms in alternative oxidase genes from ecotypes of Arabidopsis and rice revealed an environment-induced linkage to altitude and rainfall.	Physiol Plant	175(1)	e13847	2023		
52911	36824439	Huang Z., Li S., Lv Z., Tian Y., Chen Y., Zhu Y., Wang J., Deng H., Sun L., Tang W.	Identification of subspecies-divergent genetic loci responsible for mineral accumulation in rice grains.	Front Genet	14	1133600	2023		
52912	37143531	Shakeel Q., Mubeen M., Sohail M.A., Ali S., Iftikhar Y., Tahir Bajwa R., Aqueel M.A., Upadhyay S.K., Divvela P.K., Zhou L.	An explanation of the mystifying bakanae disease narrative for tomorrow's rice.	Front Microbiol	14	1153437	2023		
52913	36519256	Lin C., Ogorek L.L.P., Liu D., Pedersen O., Sauter M.	A quantitative trait locus conferring flood tolerance to deepwater rice regulates the formation of two distinct types of aquatic adventitious roots.	New Phytol.	238(4)	1403-1419	2023		
52914	36704170	Han Z., Li F., Qiao W., Zheng X., Cheng Y., Zhang L., Huang J., Wang Y., Lou D., Xing M., Fan W., Nie Y., Guo W., Wang S., Liu Z., Yang Q.	Global whole-genome comparison and analysis to classify subpopulations and identify resistance genes in weedy rice relevant for improving crops.	Front Plant Sci	13	1089445	2022		
52915	36743577	Cui Y., Zhu M., Song J., Fan H., Xu X., Wu J., Guo L., Wang J.	Expression dynamics of phytochrome genes for the shade-avoidance response in densely direct-seeding rice.	Front Plant Sci	13	1105882	2022		
52916	36646829	Hu X.H., Shen S., Wu J.L., Liu J., Wang H., He J.X., Yao Z.L., Bai Y.F., Zhang X., Zhu Y., Li G.B., Zhao J.H., You X., Xu J., Ji Y.P., Li D.Q., Pu M., Zhao Z.X., Zhou S.X., Zhang J.W., Huang Y.Y., Li Y., Ning Y., Lu Y., Huang F., Wang W.M., Fan J.	A natural allele of proteasome maturation factor improves rice resistance to multiple pathogens.	Nat Plants	9(2)	228-237	2023	UMP1	OsUMP1
52917	36654509	Chen X., Xu Q., Yue Y., Duan Y., Liu H., Chen X., Huang J., Zheng L.	Comparative oxidation proteomics analyses suggest redox regulation of cytosolic translation in rice leaves upon Magnaporthe oryzae infection.	Plant Commun		100550	2023		
52918	36771522	Akinmusola R.Y., Wilkins C.A., Doughty J.	DDM1-Mediated TE Silencing in Plants.	Plants (Basel)	12(3)		2023	DRM2,DDM1B,DDM1A	OsDRM2, osdrm2, DRM2-1,OsDDM1b, DDM1b, DDM1, DLN98, OsDLN98, CHR741, OsCHR741,OsDDM1a, DDM1a, DLN225, OsDLN225, CHR746, OsCHR746
52919	36600910	Hsieh C., Chen Y.H., Chang K.C., Yang S.Y.	Transcriptome analysis reveals the mechanisms for mycorrhiza-enhanced salt tolerance in rice.	Front Plant Sci	13	1072171	2022		
52920	36522395	Mirdar Mansuri R., Azizi A.H., Sadri A.H., Shobbar Z.S.	Long non-coding RNAs as the regulatory hubs in rice response to salt stress.	Sci Rep	12(1)	21696	2022		
52921	36411270	Osnato M.	Evolution of flowering time genes in rice: From the paleolithic to the anthropocene.	Plant Cell Environ.	46(4)	1046-1059	2023		
52922	36520360	Bashir S.S., Siddiqi T.O., Kumar D., Ahmad A.	Physio-biochemical, agronomical, and gene expression analysis reveals different responsive approach to low nitrogen in contrasting rice cultivars for nitrogen use efficiency.	Mol. Biol. Rep.	50(2)	1575-1593	2023		
52923	36541981	Javed M.A., Ali S.W., Ashfaq M., Tabassam J., Ali M., IhsanUllah M., Nayab S.F., Kaya Y., Khalili E., Ali Q., Yau T.E.	Molecular profiling of bacterial blight resistance in Malaysian rice cultivars.	Braz J Biol	82	e256189	2022		
52924	36462108	Zhan C., Lei L., Guo H., Zhou S., Xu C., Liu Z., Wu Z., Deng Y., Miao Y., Han Y., Zhang M., Li H., Huang S., Yang C., Zhang F., Li Y., Liu L., Liu X., Abbas H.M.K., Fernie A.R., Yuan M., Luo J.	disease resistance conferred by components of essential chrysanthemum oil and the epigenetic regulation of OsTPS1.	Sci China Life Sci			2022		
52925	36556416	Kaysar M.S., Sarker U.K., Monira S., Hossain M.A., Somaddar U., Saha G., Hossain S.S.F., Mokarroma N., Chaki A.K., Bhuiya M.S.U., Uddin M.R.	Optimum Nitrogen Application Acclimatizes Root Morpho-Physiological Traits and Yield Potential in Rice under Subtropical Conditions.	Life (Basel)	12(12)		2022		
52926	36672751	Debsharma S.K., Syed M.A., Ali M.H., Maniruzzaman S., Roy P.R., Brestic M., Gaber A., Hossain A.	Harnessing on Genetic Variability and Diversity of Rice (<i>Oryza sativa</i> L.) Genotypes Based on Quantitative and Qualitative Traits for Desirable Crossing Materials.	Genes (Basel)	14(1)		2022		
52927	36737913	Ai X., Xiong R., Tan X., Wang H., Zeng Y., Huang S., Shang Q., Pan X., Shi Q., Zhang J., Zeng Y.	Low temperature and light combined stress after heading on starch fine structure and physicochemical properties of late-season indica rice with different grain quality in southern China.	Food Res. Int.	164	112320	2023		
52928	36613335	Hu Y., Zhang Y., Yu S., Deng G., Dai G., Bao J.	Combined Effects of <i>BEIIb</i> and <i>SSIIa</i> Alleles on Amylose Contents, Starch Fine Structures and Physicochemical Properties of Indica Rice.	Foods	12(1)		2022		
52929	36544876	Abhijith K.P., Gopala Krishnan S., Ravikiran K.T., Dhawan G., Kumar P., Vinod K.K., Bhowmick P.K., Nagarajan M., Seth R., Sharma R., Badhran S.K., Bollinedi H., Ellur R.K., Singh A.K.	Genome-wide association study reveals novel genomic regions governing agronomic and grain quality traits and superior allelic combinations for Basmati rice improvement.	Front Plant Sci	13	994447	2022		
52930	36536238	Ozaki H., Mizokami Y., Sugiura D., Sohtome T., Miyake C., Sakai H., Noguchi K.	Tight relationship between two photosystems is robust in rice leaves under various nitrogen conditions.	J. Plant Res.	136(2)	201-210	2023		
52931	36460977	Wan J., Meng S., Wang Q., Zhao J., Qiu X., Wang L., Li J., Lin Y., Mu L., Dang K., Xie Q., Tang J., Ding D., Zhang Z.	Suppression of microRNA168 enhances salt tolerance in rice (Oryza sativa L.).	BMC Plant Biol.	22(1)	563	2022		
52932	36573146	Ribeiro C., de Marcos Lapaz A., de Freitas-Silva L., Ribeiro K.V.G., Yoshida C.H.P., Dal-Bianco M., Cambraia J.	Aluminum promotes changes in rice root structure and ascorbate and glutathione metabolism.	Physiol Mol Biol Plants	28(11-12)	2085-2098	2022		
52933	36503186	Poonguzhali P., Chauhan A., Kar A., Lavale S., Nayak S.N., Prashanthi S.K.	New Sources of Resistance and Identification of DNA Marker Loci for Sheath Blight Disease Caused by Rhizoctonia solani Kuhn, in Rice.	Plant Pathol. J.	38(6)	572-582	2022		
52934	36508805	Duan R., Lin Y., Yang L., Zhang Y., Hu W., Du Y., Huang M.	Effects of antimony stress on growth, structure, enzyme activity and metabolism of Nipponbare rice (Oryza sativa L.) roots.	Ecotoxicol. Environ. Saf.	249	114409	2023		
52935	36542176	Cheng X., Huang Y., Tan Y., Tan L., Yin J., Zou G.	Potentially Useful Dwarfing or Semi-dwarfing Genes in Rice Breeding in Addition to the sd1 Gene.	Rice (N Y)	15(1)	66	2022		
52936	36605966	Zhang Y., Liu X., Su R., Xiao Y., Deng H., Lu X., Wang F., Chen G., Tang W., Zhang G.	9-<i>cis</i>-epoxycarotenoid dioxygenase 1 confers heat stress tolerance in rice seedling plants.	Front Plant Sci	13	1092630	2022		
52937	36589052	Zhang Q., Xie J., Wang X., Liu M., Zhu X., Yang T., Khan N.U., Sun C., Li J., Zhang Z., Li Z., Zhang H.	Natural variation of <i>RGN1a</i> regulates grain number per panicle in <i>japonica</i> rice.	Front Plant Sci	13	1097622	2022	ES1,RGN1B,GHD7,XPB2,HD2,RGN1A	TUT1, OsSCAR1, SCAR1, TUT1/OsSCAR1, OsSCAR2, SCAR2,RGN1b, OsRGN1b,Ghd2, Ghd7, OsGhd7, OsCCT26, OsCMF8, OsI, Ghd7/Hd4, Hd4, EH7-1/Hd4, Ghd7-0a, EH7-1, EH7/Ghd7, EH7, OsEH7, GLW7.1, OsGLW7.1,OsXPB2,Hd2(t), Hd2, qHD2(t), OsPRR37, Os-PRR37, PRR37, Prr4, OsPRR4, DTH7, Os DTH7, OsCCT28, CCT28, Ghd7.1, PRR37/Hd2, EH7-2, EH7-2/Hd2, Hd2/PRR37, PRR37-1a, PRR37-1b, PRR37-1c, PRR37-2a, PRR37- 2, HD7.2,RGN1a, OsRGN1a
52938	36613450	Raj S.R.G., Nadarajah K.	QTL and Candidate Genes: Techniques and Advancement in Abiotic Stress Resistance Breeding of Major Cereals.	Int J Mol Sci	24(1)		2022		
52939	36555582	Xie Y.N., Yang T., Zhang B.T., Qi Q.Q., Ding A.M., Shang L.G., Zhang Y., Qian Q., Zhang Z.F., Yan N.	Systematic Analysis of BELL Family Genes in <i>Zizania latifolia</i> and Functional Identification of <i>ZlqSH1a/b</i> in Rice Seed Shattering.	Int J Mol Sci	23(24)		2022		
52940	36464025	Cai L., Cui S., Jin T., Huang X., Hou H., Hao B., Xu Z., Cai L., Hu Y., Yang X., Zhou L., Yu T., Tian Y., Liu X., Chen L., Liu S., Jiang L., Zhou S., Wan J.	The N6-methyladenosine binding proteins YTH03/05/10 coordinately regulate rice plant height.	Plant Sci.	329	111546	2023	YTH10,YTH5,YTH3	OsYTH10, OsECT11, ECT11,OsYTH05, YTH05, OsYTH5, OsECT6, ECT6,OsYTH03, YTH03, OsYTH3, OsECT3, ECT3
52941	36551278	Zhao N., Yuan R., Usman B., Qin J., Yang J., Peng L., Mackon E., Liu F., Qin B., Li R.	Detection of QTLs Regulating Six Agronomic Traits of Rice Based on Chromosome Segment Substitution Lines of Common Wild Rice (<i>Oryza rufipogon</i> Griff.) and Mapping of <i>qPH1.1</i> and <i>qLMC6.1</i>.	Biomolecules	12(12)		2022		
52942	36514785	Barrero L.S., Willmann M.R., Craft E.J., Akther K.M., Harrington S.E., Garzon-Martinez GA., Glahn R.P., Pi&#xf1;eros MA., McCouch S.R.	Identifying genes associated with abiotic stress tolerance suitable for CRISPR/Cas9 editing in upland rice cultivars adapted to acid soils.	Plant Direct	6(12)	e469	2022		
52943	36552332	Zhang Y.L., Xia Q.Y., Jiang X.Q., Hu W., Ye X.X., Huang Q.X., Yu S.B., Guo A.P., Lu B.R.	Reducing Seed Shattering in Weedy Rice by Editing <i>SH4</i> and <i>qSH1</i> Genes: Implications in Environmental Biosafety and Weed Control through Transgene Mitigation.	Biology (Basel)	11(12)		2022		
52944	36776443	Hayashi K., Kawahara Y., Maeda H., Hayano-Saito Y.	Comparative analyses of <i>Stvb</i>-allelic genes reveal <i>japonica</i> specificity of rice stripe resistance in <i>Oryza sativa</i>.	Breed. Sci.	72(5)	333-342	2022		
52945	36382925	Wang C., Feng X., Yuan Q., Lin K., Zhang X., Yan L., Nan J., Zhang W., Wang R., Wang L., Xue Q., Yang X., Liu Z., Lin S.	Upgrading the genome of an elite japonica rice variety Kongyu 131 for lodging resistance improvement.	Plant Biotechnol. J.	21(2)	419-432	2023		
52946	36616174	Ullah I., Ali H., Mahmood T., Khan M.N., Haris M., Shah H., Mihoub A., Jamal A., Saeed M.F., Mancinelli R., Radicetti E.	Pyramiding of Four Broad Spectrum Bacterial Blight Resistance Genes in Cross Breeds of Basmati Rice.	Plants (Basel)	12(1)		2022		
52947	36493669	Yang K., Huang Y., Yang J., Yu L., Hu Z., Sun W., Zhang Q.	The determiner of photosynthetic acclimation induced by biochemical limitation under elevated CO2 in japonica rice.	J. Plant Physiol.	280	153889	2023		
52948	36398733	Ilyas M., Hussain Shah S., Fujita Y., Maruyama K., Nakashima K., Yamaguchi-Shinozaki K., Jan A.	OsTZF1, a CCCH-tandem zinc finger protein gene, driven under own promoter produces no pleiotropic effects and confers salt and drought tolerance in rice.	Plant Signal Behav	17(1)	2142725	2022		
52949	36559559	Lantos C., Jancs&#xf3; M., Sz&#xe9;kely &#xc1;., Nagy &#xc9;., Szal&#xf3;ki T., Pauk J.	Improvement of Anther Culture to integrate Doubled Haploid Technology in Temperate Rice (<i>Oryza sativa</i> L.) Breeding.	Plants (Basel)	11(24)		2022		
52950	35318879	Kim Y., Takahashi S., Miyao M.	Relationship between reduction in rice (Nipponbare) leaf blade size under elevated CO2 and miR396-<i>GRF</i> module.	Plant Signal Behav	17(1)	2041280	2022		
52951	36513313	Tiwari I.M., Vijayan J., Ray S., Jain P., Jatan R., Kumar N., Kumar M., Singh N.K., Bisht D.S.	Selection of suitable internal control gene for assaying gene expression in rice through qRT-PCR during sheath blight infection.	J. Biotechnol.	362	1-11	2023		
52952	36616222	Lertngim N., Ruangsiri M., Klinsawang S., Raksatikan P., Thunnom B., Siangliw M., Toojinda T., Siangliw J.L.	Photosynthetic Plasticity and Stomata Adjustment in Chromosome Segment Substitution Lines of Rice Cultivar KDML105 under Drought Stress.	Plants (Basel)	12(1)		2022		
52953	36600923	Chen T., Ma J., Xu C., Jiang N., Li G., Fu W., Feng B., Wang D., Wu Z., Tao L., Fu G.	Increased ATPase activity promotes heat-resistance, high-yield, and high-quality traits in rice by improving energy status.	Front Plant Sci	13	1035027	2022		
52954	36495065	Mu N., Li Y., Li S., Shi W., Shen Y., Yang H., Zhang F., Tang D., Du G., You A., Cheng Z.	MUS81 is required for atypical recombination intermediate resolution but not crossover designation in rice.	New Phytol.	237(6)	2422-2434	2023		
52955	35876337	Deng Q.Q., Ye M., Wu X.B., Song J., Wang J., Chen L.N., Zhu Z.Y., Xie J.	Damage of brown planthopper (BPH) <i>Nilaparvata lugens</i> and rice leaf folder (LF) <i>Cnaphalocrocis medinalis</i> in parent plants lead to distinct resistance in ratoon rice.	Plant Signal Behav	17(1)	2096790	2022		
52956	36579777	Liu T., Deng S., Zhang C., Yang X., Shi L., Xu F., Wang S., Wang C.	Brassinosteroid signaling regulates phosphate starvation-induced malate secretion in plants.	J Integr Plant Biol			2022		
52957	36512713	Jardim-Messeder D., Caverzan A., Bastos G.A., Galhego V., Souza-Vieira Y., Lazzarotto F., Felix-Mendes E., Lavaquial L., Nicomedes Junior J., Margis-Pinheiro M., Sachetto-Martins G.	Genome-wide, evolutionary, and functional analyses of ascorbate peroxidase (APX) family in Poaceae species.	Genet. Mol. Biol.	46(1 Suppl 1)	e20220153	2022		
52958	36572865	Lin X., Huang Y., Rao Y., Ouyang L., Zhou D., Zhu C., Fu J., Chen C., Yin J., Bian J., He H., Zou G., Xu J.	A base substitution in OsphyC disturbs its Interaction with OsphyB and affects flowering time and chlorophyll synthesis in rice.	BMC Plant Biol.	22(1)	612	2022	HD3A,EF1,PHYB,PORA,HEMA,RFT1,SE1,YGL10,FGL,LHD3,CHLH	Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,phyB, PHYB1, OsPHYB, OsphyB, OsYHB, YHB, OsPHYB/OsYHB,OsPorA, OsPORA,HEMA1, OsHEMA, GluTR, OsHEMA1, hemA,FT-L 3, OsFTL3, FTL3, FT-L3, RFT, OsRFT1,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, OsHd1,  Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,CAO, OsCAO, CAO1, OsCAO1, Oslls1, Lls1, DVR, PGL,fgl(fl), fl, fgl, OsFGL, OsPorB, PoPA, PORA, porA, OsPORA, PORB, OsPORB,PHYC, OsPHYC, OsPHYCa, OsPHYCb, OsLHD3,OsChlH, ChlH, OsCHLH
52959	36499636	Jan R., Asaf S., Lubna, Asif S., Kim E.G., Jang Y.H., Kim N., Al-Harrasi A., Lee G.S., Kim K.M.	Enhancing the Expression of the <i>OsF3H</i> Gene in <i>Oryza sativa</i> Leads to the Regulation of Multiple Biosynthetic Pathways and Transcriptomic Changes That Influence Insect Resistance.	Int J Mol Sci	23(23)		2022		
52960	36482224	Koteyeva N.K., Voznesenskaya E.V., Berim A., Gang D.R., Edwards G.E.	Structural diversity in salt excreting glands and salinity tolerance in Oryza coarctata, Sporobolus anglicus and Urochondra setulosa.	Planta	257(1)	9	2022		
52961	36613454	Tang M., Zhang H., Wan Y., Deng Z., Qin X., Li R., Liu F.	Transcriptome Analysis in Response to Infection of <i>Xanthomonas oryzae</i> pv. <i>oryzicola</i> Strains with Different Pathogenicity.	Int J Mol Sci	24(1)		2022		
52962	36511755	Duan S.G., Lv C.L., Liu J.H., Yi S.C., Yang R.N., Liu A., Wang M.Q.	NlugOBP8 in <i>Nilaparvata lugens</i> Involved in the Perception of Two Terpenoid Compounds from Rice Plant.	J. Agric. Food Chem.	70(51)	16323-16334	2022		
52963	36541883	Khoo Y.W., Rosina B., Amiruddin S., Tan H.T., Khaw Y.S., Li S., Chong K.P.	First Report of <i>Curvularia lunata</i> Causing Leaf Spot on <i>Oryza sativa</i> in Sabah, Malaysian Borneo.	Plant Dis.			2022		
52964	36616214	Kasemsap P., Bloom A.J.	Breeding for Higher Yields of Wheat and Rice through Modifying Nitrogen Metabolism.	Plants (Basel)	12(1)		2022		
52965	36670941	Li J., Feng B., Yu P., Fu W., Wang W., Lin J., Qin Y., Li H., Chen T., Xu C., Tao L., Wu Z., Fu G.	Oligomeric Proanthocyanidins Confer cold tolerance in Rice through Maintaining Energy Homeostasis.	Antioxidants (Basel)	12(1)		2022		
52966	36559542	Alharbi K., Osman H.S., Rashwan E., Hafez E.M., Omara A.E.	Stimulating the Growth, Anabolism, Antioxidants, and Yield of Rice Plants Grown under Salt Stress by Combined Application of Bacterial Inoculants and Nano-Silicon.	Plants (Basel)	11(24)		2022		
52967	36527683	Zhou F.Y., Han H., Han Y.J., Nyporko A., Yu Q., Beckie H.J., Powles S.B.	aldo-keto reductase may contribute to glyphosate resistance in Lolium rigidum.	Pest Manag. Sci.	79(4)	1528-1537	2023		
52968	36675857	Chen Y., Liu Z., Meng S., Shen Z., Shi H., Qiu J., Lin F., Zhang S., Kou Y.	OsCERK1 Contributes to Cupric Oxide Nanoparticles Induced Phytotoxicity and Basal Resistance against Blast by Regulating the Anti-Oxidant System in Rice.	J Fungi (Basel)	9(1)		2022		
52969	36457051	Yuan P., Yang S., Feng L., Chu J., Dong H., Sun J., Chen H., Li Z., Yamamoto N., Zheng A., Li S., Yoon H.C., Chen J., Ma D., Xuan Y.H.	Red-light receptor Phytochrome B inhibits BZR1-NAC028-CAD8B signaling to negatively regulate rice resistance to sheath blight.	Plant Cell Environ.	46(4)	1249-1263	2023		
52970	36457304	Shaar-Moshe L., Brady S.M.	SHORT-ROOT and SCARECROW homologs regulate patterning of diverse cell types within and between species.	New Phytol.	237(5)	1542-1549	2023		
52971	36559692	Rajendran S., Kim C.M.	<i>OsCSLD1</i> Mediates NH4+-Dependent root hair Growth Suppression and <i>AMT1;2</i> Expression in Rice (<i>Oryza sativa</i> L.).	Plants (Basel)	11(24)		2022		
52972	36513420	Phitaktansakul R., Kim K.W., Aung K.M., Maung T.Z., Min M.H., Somsri A., Lee W., Lee S.B., Nam J., Kim S.H., Lee J., Kwon S.W., Nawade B., Chu S.H., Park S.W., Kang K.K., Cho Y.H., Lee Y.S., Chung I.M., Park Y.J.	Multi-omics analysis reveals the genetic basis of rice fragrance mediated by betaine aldehyde dehydrogenase 2.	Journal of Advanced Research	42	303-314	2022		
52973	36536186	Verma R.K., Chetia S.K., Sharma V., Singh S.K., Sarmah B.K., Modi M.K.	Genetic analysis for detection of genes associated to drought tolerance in rice accessions belonging to north east India.	Mol. Biol. Rep.	50(3)	1993-2006	2023		
52974	36469200	Bao X., Wang Y., Qi Y., Lei C., Wang Y., Pan T., Yu M., Zhang Y., Wu H., Zhang P., Ji Y., Yang H., Jiang X., Jing R., Yan M., Zhang B., Gu C., Zhu J., Hao Y., Lei J., Zhang S., Chen X., Chen R., Sun Y., Zhu Y., Zhang X., Jiang L., Visser R.G.F., Ren Y., Wang Y., Wan J.	A deleterious Sar1c variant in rice inhibits export of seed storage proteins from the endoplasmic reticulum.	Plant Mol. Biol.	111(3)	291-307	2023		
52975	36510797	Zhang L., Xiang Z., Li J., Wang S., Chen Y., Liu Y., Mao D., Luan S., Chen L.	bHLH57 confers chilling tolerance and grain yield improvement in rice.	Plant Cell Environ.	46(4)	1402-1418	2023		
52976	36568369	Jadamba C., Vea R.L., Ryu J.H., Paek N.C., Jang S., Chin J.H., Yoo S.C.	GWAS analysis to elucidate genetic composition underlying a photoperiod-insensitive rice population, North Korea.	Front Genet	13	1036747	2022		
52977	36618635	Liang W., Du H., Pang B., Cheng J., He B., Hu F., Lv Y., Zhang Y.	High-density genetic mapping identified QTLs for anaerobic germination tolerance in rice.	Front Plant Sci	13	1076600	2022		
52978	36555786	Zhang C., Meng W., Wang Y., Zhou Y., Wang S., Qi F., Wang N., Ma J.	Comparative Analysis of Physiological, Hormonal and Transcriptomic Responses Reveal Mechanisms of Saline-Alkali Tolerance in Autotetraploid Rice (<i>Oryza sativa</i> L.).	Int J Mol Sci	23(24)		2022		
52979	36618669	Pantoja-Benavides AD., Garces-Varon G., Restrepo-D&#xed;az H.	Foliar cytokinins or brassinosteroids applications influence the rice plant acclimatization to combined heat stress.	Front Plant Sci	13	983276	2022		
52980	36377929	Daware A., Malik A., Srivastava R., Das D., Ellur R.K., Singh A.K., Tyagi A.K., Parida S.K.	Rice Pangenome Genotyping Array: an efficient genotyping solution for pangenome-based accelerated genetic improvement in rice.	Plant J.	113(1)	26-46	2023		
52981	36529911	Singh J., Das S., Jagadis Gupta K., Ranjan A., Foyer C.H., Thakur J.K.	Physiological implications of SWEETs in plants and their potential applications in improving source-sink relationships for enhanced yield.	Plant Biotechnol. J.			2022		
52982	36565792	Narayanasamy S., Thankappan S., Kumaravel S., Ragupathi S., Uthandi S.	Complete genome sequence analysis of a plant growth-promoting phylloplane Bacillus altitudinis FD48 offers mechanistic insights into priming drought stress tolerance in rice.	Genomics	115(1)	110550	2023		
52983	36495424	Sun C., Wang Y., Yang X., Tang L., Wan C., Liu J., Chen C., Zhang H., He C., Liu C., Wang Q., Zhang K., Zhang W., Yang B., Li S., Zhu J., Sun Y., Li W., Zhou Y., Wang P., Deng X.	MATE transporter GFD1 cooperates with sugar transporters, mediates carbohydrate partitioning and controls grain-filling duration, grain size and number in rice.	Plant Biotechnol. J.	21(3)	621-634	2023	SWEET5,XA41,SUT4,WX1,SWEET13,SUT5,SUT1,XA13,ALK,SBE3,AGPL2,FLO5,SSI,SWEET4,SUT2,GFD1	OsSWEET5,OsSWEET14, SWEET14, Os11N3, Os-11N3, 11N3, Xa41(t), xa41, Os11N3/SWEET14, OsSWEET14/Os11N3,OsSUT4(t), OsSUT4,wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx,OsSWEET13, Xa25(t), Xa25, OsMtN3, Xa25/SWEET13, OsSWEET13/XA25,OsSUT5(t), OsSUT5Z, OsSUT5,OsSUT1, OsSUT2,xa13, Xa13, Os8N3, Os-8N3, 8N3, OsSWEET11, SWEET11, OsSWEET11/Xa13, Xa13/Os8N3/SWEET11, Os8N3/Xa13, OsSWEET11/Os8N3, OsSWEET11a, SWEET11a,alk, SSII-3, OsSSIIa, OsSSII-3, SSIIa, SSS2A, OsSSIIaChr6, SS2a,SBEIII*, SBEIII, Sbe3, RBE3, QEIIa, QEIIA, BEIIb, BEIIB, SBEIIb, OsBEIIb, sbe3, SBE III, OsSBEIIb, SBEIIb,OsAGPL2, osagpl2, APL2, OsAPL2, AGPiso, sh2, Sh2, GIF2, GAS1 ,OsSSIIIa, SSIII-2, OsSSIII-2, OsSS3A, SS3A, SS3a, OsSSSIIIa, SSIIIa, Flo5,OsSSI, SSS 1, SSS1, SS1, OsSS1, SSSI, OsSSSI,OsSWEET4,OsSUT2(t), SUT2M, OsSUT2, OsSUT2M, OsSUT5,OsGFD1
52984	36616262	Lim S., Onoda A., Orn C., Iwamoto H., Ishikawa R., Saito H., Sato Y., Ishii T.	Variations in Grain Traits among Local Rice Varieties Collected More Than Half-Century Ago in Indochinese Countries.	Plants (Basel)	12(1)		2022		
52985	36613735	Li Z., Zhu M., Huang J., Jiang S., Xu S., Zhang Z., He W., Huang W.	Genome-Wide Comprehensive Analysis of the Nitrogen Metabolism Toolbox Reveals Its Evolution and Abiotic Stress Responsiveness in Rice (<i>Oryza sativa</i> L.).	Int J Mol Sci	24(1)		2022		
52986	36513417	Xu Z., Xu X., Wang Y., Liu L., Li Y., Yang Y., Liu L., Zou L., Chen G.	A varied AvrXa23-like TALE enables the bacterial blight pathogen to avoid being trapped by Xa23 resistance gene in rice.	Journal of Advanced Research	42	263-272	2022		
52987	36585972	Wang Q., Chen H., Zhu L., Feng P., Fan M., Wang J.	WSL214 negatively regulates ROS accumulation and pathogen defense response in rice.	Plant Cell Rep.	42(2)	449-460	2023		
52988	36577813	de Bastos Pazini J., da Silva Martins JF., da Rosa Dorneles K., Lopes Crizel R., da Silva FF., Clasen Chaves F., Fernando J.A., Dallagnol L.J., Seidel E.J., Stout M.J., Gr&#xfc;tzmacher AD.	Morphoanatomical and biochemical factors associated with rice resistance to the South American rice water weevil, Oryzophagus oryzae (Coleoptera: Curculionidae).	Sci Rep	12(1)	22480	2022		
52989	36471210	Premachandran K., Srinivasan T.S.	A brief review on oryzacystatin: a potent phytocystatin for crop management.	Mol. Biol. Rep.	50(2)	1799-1807	2023		
52990	35442849	Li Y., Wu L., Ren M., Zhu J., Xu J., Hu H., Quan X., Huang C., Mao C.	Functional redundancy of <i>OsPIN1</i> paralogous genes in regulating plant growth and development in rice.	Plant Signal Behav	17(1)	2065432	2022		
52991	36559562	Sao R., Sahu P.K., Patel R.S., Das B.K., Jankuloski L., Sharma D.	Genetic Improvement in Plant Architecture, Maturity Duration and Agronomic Traits of Three Traditional Rice Landraces through Gamma Ray-Based Induced Mutagenesis.	Plants (Basel)	11(24)		2022		
52992	36589042	Mao Z., Di X., Xia S., Chen Q., Ma X., Chen M., Yang Z., Zhao F., Ling Y.	Detecting and pyramiding target QTL for plant- and grain-related traits <i>via</i> chromosomal segment substitution line of rice.	Front Plant Sci	13	1020847	2022		
52993	35946863	Fu J., Liu B.	Individual and combined effects of land use and weeds on Cry1Ab/c protein expression and yield of transgenic <i>Cry1Ab/c</i> rice.	GM Crops Food	13(1)	156-170	2022		
52994	36401805	Fichman Y., Xiong H., Sengupta S., Morrow J., Loog H., Azad R.K., Hibberd J.M., Liscum E., Mittler R.	Phytochrome B regulates reactive oxygen signaling during abiotic and biotic stress in plants.	New Phytol.	237(5)	1711-1727	2023		
52995	36585635	Zhou S., He L., Lin W., Su Y., Liu Q., Qu M., Xiao L.	Integrative analysis of transcriptome and metabolism reveals potential roles of carbon fixation and photorespiratory metabolism in response to drought in Shanlan upland rice.	BMC Genomics	23(1)	862	2022		
52996	36526029	Ying Y., Hu Y., Zhang Y., Tappiban P., Zhang Z., Dai G., Deng G., Bao J., Xu F.	Identification of a new allele of soluble starch synthase IIIa involved in the elongation of amylopectin long chains in a chalky rice mutant.	Plant Sci.	328	111567	2023		
52997	36469228	Wang Z., Wu X., Chen Y., Wu C., Long W., Zhu S.	Transcriptomic profiling of the cold stress and recovery responsiveness of two contrasting Guizhou HE rice genotypes.	Genes Genomics	45(4)	401-412	2023		
52998	36582650	Taniguchi S., Sakamoto T., Imase R., Nonoue Y., Tsunematsu H., Goto A., Matsushita K., Ohmori S., Maeda H., Takeuchi Y., Ishii T., Yonemaru J.I., Ogawa D.	Prediction of heading date, culm length, and biomass from canopy-height-related parameters derived from time-series UAV observations of rice.	Front Plant Sci	13	998803	2022		
52999	36495813	Ma M., Lu Y., Di D., Kronzucker H.J., Dong G., Shi W.	The nitrification inhibitor 1,9-decanediol from rice roots promotes root growth in Arabidopsis through involvement of ABA and PIN2-mediated auxin signaling.	J. Plant Physiol.	280	153891	2023		
53000	36776444	Matsuba S., Maruyama-Funatsuki W., Umemoto T., Kato H., Kuroki M., Yokogami N., Ikegaya T., Shimizu H., Iriki N.	The induced mutant allele <i>flo4-303</i> confers floury characteristics on the japonica rice cultivar 'Hoshinoko'.	Breed. Sci.	72(5)	383-388	2022		
53001	36501386	Singh L., Coronejo S., Pruthi R., Chapagain S., Bhattarai U., Subudhi P.K.	Genetic Dissection of Alkalinity Tolerance at the Seedling Stage in Rice (<i>Oryza sativa</i>) Using a High-Resolution Linkage Map.	Plants (Basel)	11(23)		2022		
53002	36440495	Jung J.H., Li Z., Chen H., Yang S., Li D., Priatama R.A., Kumar V., Xuan Y.H.	Mutation of Phytochrome B promotes resistance to sheath blight and saline-alkaline stress via increasing ammonium uptake in rice.	Plant J.	113(2)	277-290	2023		
53003	36526054	Jan R., Asif S., Asaf S., Lubna, Du X.X., Park J.R., Nari K., Bhatta D., Lee I.J., Kim K.M.	Melatonin alleviates arsenic (As) toxicity in rice plants via modulating antioxidant defense system and secondary metabolites and reducing oxidative stress.	Environ. Pollut.	318	120868	2023		
53004	36531415	Manna M., Rengasamy B., Ambasht N.K., Sinha A.K.	Characterization and expression profiling of PIN auxin efflux transporters reveal their role in developmental and abiotic stress conditions in rice.	Front Plant Sci	13	1059559	2022		
53005	36589088	Gao H., Dou Z., Chen L., Lu Y., Sun D., Xu Q., Sun R., Chen X.	Effects of semi-deep water irrigation on hybrid indica rice lodging resistance.	Front Plant Sci	13	1038129	2022		
53006	36584855	Kaur J., Anand V., Srivastava S., Bist V., Naseem M., Singh P., Gupta V., Singh P.C., Saxena S., Bisht S., Srivastava P.K., Srivastava S.	Mitigation of arsenic toxicity in rice by the co-inoculation of arsenate reducer yeast with multifunctional arsenite oxidizing bacteria.	Environ. Pollut.	320	120975	2023		
53007	36394418	Huang T., Li Y., Wang W., Xu L., Li J., Qi Y.	Evolution of lmiRNAs and their targets from MITEs for rice adaptation.	J Integr Plant Biol	64(12)	2411-2424	2022		
53008	36550554	Xie J., Wang W., Yang T., Zhang Q., Zhang Z., Zhu X., Li N., Zhi L., Ma X., Zhang S., Liu Y., Wang X., Li F., Zhao Y., Jia X., Zhou J., Jiang N., Li G., Liu M., Liu S., Li L., Zeng A., Du M., Zhang Z., Li J., Zhang Z., Li Z., Zhang H.	Large-scale genomic and transcriptomic profiles of rice hybrids reveal a core mechanism underlying heterosis.	Genome Biol.	23(1)	264	2022		
53009	36547375	Ueda M., Kato N., Kurata Y., Imai M., Yang G., Taniguchi K.	Host-Selective Phytotoxins Incorporating the Epoxy-Triene-Decacarboxylate Moiety Function through the Hijacking of the Plant-Microbe Interaction System.	ACS Chem. Biol.	18(1)	12-17	2023		
53010	36482454	Feng D., Liang Z., Wang Y., Yao J., Yuan Z., Hu G., Qu R., Xie S., Li D., Yang L., Zhao X., Ma Y., Lohmann J.U., Gu X.	Chromatin accessibility illuminates single-cell regulatory dynamics of rice root tips.	BMC Biol.	20(1)	274	2022		
53011	36553597	Islam ASMF., Mustahsan W., Tabien R., Awika J.M., Septiningsih E.M., Thomson M.J.	Identifying the Genetic Basis of Mineral Elements in Rice Grain Using Genome-Wide Association Mapping.	Genes (Basel)	13(12)		2022		
53012	36616273	Uttam G.A., Suman K., Jaldhani V., Babu P.M., Rao D.S., Sundaram R.M., Neeraja C.N.	Identification of Genomic Regions Associated with High Grain Zn Content in Polished Rice Using Genotyping-by-Sequencing (GBS).	Plants (Basel)	12(1)		2022		
53013	36515163	Liu C., Bai L., Cao P., Li S., Huang S.X., Wang J., Li L., Zhang J., Zhao J., Song J., Sun P., Zhang Y., Zhang H., Guo X., Yang X., Tan X., Liu W., Wang X., Xiang W.	Novel Plant Growth Regulator Guvermectin from Plant Growth-Promoting Rhizobacteria Boosts Biomass and Grain Yield in Rice.	J. Agric. Food Chem.	70(51)	16229-16240	2022		
53014	36575169	Vernet A., Meynard D., Lian Q., Mieulet D., Gibert O., Bissah M., Rivallan R., Autran D., Leblanc O., Meunier A.C., Frouin J., Taillebois J., Shankle K., Khanday I., Mercier R., Sundaresan V., Guiderdoni E.	High-frequency synthetic apomixis in hybrid rice.	Nat Commun	13(1)	7963	2022		
53015	36535835	Zhang F., Wang M., Wang G.L., Ning Y., Wang R.	Insights into metabolite biosynthesis and regulation in rice immune signaling.	Trends Microbiol.	31(3)	225-228	2023		
53016	36582993	Ahmad F., Hasan N., Hisham S.N., Yusof S.N., Hassan A.A., Hussein S., Harun A.R., Shamsudin N.A.A.	Data on genome resequencing of the rice cultivar MR219 and its abiotic stress tolerant mutant lines, NMR152 and NMR151.	Data Brief	46	108815	2023		
53017	36566483	S&#xe1;nchez-Sanuy F., Mateluna-Cuadra R., Tomita K., Okada K., Sacchi G.A., Campo S., San Segundo B.	Iron Induces Resistance Against the Rice Blast Fungus Magnaporthe oryzae Through Potentiation of Immune Responses.	Rice (N Y)	15(1)	68	2022		
53018	36535360	He C., Song L., Liu Z., Xiong H., Zhao Q.	Effects of stirring speed ladder on the acid-promoted refolding of rice glutelin.	Int. J. Biol. Macromol.	228	216-223	2023		
53019	36616295	Michael T.P.	Time of Day Analysis over a Field Grown Developmental Time Course in Rice.	Plants (Basel)	12(1)		2022		
53020	36845511	Huang M., Liao C., Xie J., Chen J., Cao F.	Lysine content and its relationship with protein content in <i>indica</i> rice landraces of China.	Food Chem X	17	100549	2023		
53021	36508812	Lu S., Chen J., Wang J., Wu D., Bian H., Jiang H., Sheng L., He C.	Toxicological effects and transcriptome mechanisms of rice (Oryza sativa L.) under stress of quinclorac and polystyrene nanoplastics.	Ecotoxicol. Environ. Saf.	249	114380	2023		
53022	36458343	Peng G., Liu Z., Zhuang C., Zhou H.	Environment-sensitive genic male sterility in rice and other plants.	Plant Cell Environ.	46(4)	1120-1142	2023		
53023	36603440	Zhao D., Chen P., Chen Z., Zhang L., Wang Y., Xu L.	Genome-wide analysis of the LBD family in rice: Gene functions, structure and evolution.	Comput. Biol. Med.	153	106452	2023		
53024	36559523	Hamad H.S., Bleih E.M., Gewaily E.E., Abou Elataa AE., El Sherbiny HA., Abdelhameid N.M., Rehan M.	Cyanobacteria Application Ameliorates Floral Traits and Outcrossing Rate in Diverse Rice Cytoplasmic Male Sterile Lines.	Plants (Basel)	11(24)		2022		
53025	36507967	Kommana M., Reddy D.M., Amarnath K., Naik M.V.K., Withanawasam D.M., Bommisetty R., Maneesha K., Bhargavi M., Eragam A., Reddy B.V.B., Sudhakar P., Krishna L., Lekkala S.P., Chakravartty N., Lachagari V.B.R., Vemireddy L.R.	Identification of genomic regions governing moisture and heat stress tolerance employing association mapping in rice (Oryza sativa L.).	Mol. Biol. Rep.	50(2)	1499-1515	2023		
53026	36580498	Gao J., Zhang Y., Yu L., Li Y., Liao S., Wang J., Guan L.	Identification of Enolase 1 as a Potential Target for <i>Magnaporthe oryzae</i>: Integrated Proteomic and Molecular Dynamics Simulation.	J Chem Inf Model	63(2)	619-632	2023		
53027	36497177	Yang M.C., Wu Z.C., Huang L.L., Abbas F., Wang H.C.	Systematic Methods for Isolating High Purity Nuclei from Ten Important Plants for Omics Interrogation.	Cells	11(23)		2022		
53028	36581797	Nayak D.K., Sahoo S., Barik S.R., Sanghamitra P., Sangeeta S., Pandit E., Reshmi Raj KR., Basak N., Pradhan S.K.	Association mapping for protein, total soluble sugars, starch, amylose and chlorophyll content in rice.	BMC Plant Biol.	22(1)	620	2022		
53029	36525788	Liu Y., Hu B., Chu C.	Toward improving nitrogen use efficiency in rice: Utilization, coordination, and availability.	Curr. Opin. Plant Biol.	71	102327	2023		
53030	36535337	Wang L., Yang C., Shan Q., Zhao M., Yu J., Li Y.F.	Transcriptome-wide profiling of mRNA N6-methyladenosine modification in rice panicles and flag leaves.	Genomics	115(1)	110542	2023		
53031	36525364	Yan X., Chen S., Pan Z., Zhao W., Rui Y., Zhao L.	AgNPs-Triggered Seed Metabolic and Transcriptional Reprogramming Enhanced Rice Salt Tolerance and Blast Resistance.	ACS Nano	17(1)	492-504	2023		
53032	36501265	Zhang Y., Fan F., Zhang Q., Luo Y., Liu Q., Gao J., Liu J., Chen G., Zhang H.	Identification and Functional Analysis of Long Non-Coding RNA (lncRNA) in Response to Seed Aging in Rice.	Plants (Basel)	11(23)		2022		
53033	36483478	Min C.W., Jang J.W., Lee G.H., Gupta R., Kim S.T.	TMT-based quantitative proteome data of MSP1 overexpressed rice.	Data Brief	46	108791	2023		
53034	36553494	Awad-Allah MMA., Shafie W.W.M., Alsubeie M.S., Alatawi A., Safhi F.A., ALshamrani SM., Albalawi D.A., Al-Amrah H., Alshehri D., Alshegaihi R.M., Basahi M.A., Masrahi A.S.	Utilization of Genetic Resources, Genetic Diversity and Genetic Variability for Selecting New Restorer Lines of Rice (<i>Oryza sativa</i> L.).	Genes (Basel)	13(12)		2022		
53035	36417662	Arefian M., Prasad T.S.K.	Susceptibility of Rice Crop to Salt Threat: Proteomic, Metabolomic, and Physiological Inspections.	J. Proteome Res.	22(1)	152-169	2023		
53036	36533293	Fatimah S., Syafii M., Zulaeha S., Haristianita M.D., Purwoko D.	RNASeq data from Indonesian recalcitrant and non-recalcitrant rice varieties on anther culture.	Data Brief	45	108760	2022		
53037	36431926	Tian X., Xie H., Li J., Cui L., Yu Y.L., Li B., Li Y.F.	Nano-WSe2 Is Absorbable and Transformable by Rice Plants.	Molecules	27(22)		2022		
53038	36507439	Zhang C., Li Y., Yu Z., Wang G., Liu X., Liu J., Liu J., Zhang X., Yin K., Jin J.	Co-elevation of atmospheric [CO2] and temperature alters photosynthetic capacity and instantaneous water use efficiency in rice cultivars in a cold-temperate region.	Front Plant Sci	13	1037720	2022		
53039	36430382	Ding M., Zhang M., Wang Z., Yu X., Kinoshita T., Zeng H., Zhu Y.	Overexpression of a Plasma Membrane H+-ATPase Gene <i>OSA1</i> Stimulates the Uptake of Primary Macronutrients in Rice Roots.	Int J Mol Sci	23(22)		2022		
53040	36430648	Lu S., Jia Z., Meng X., Chen Y., Wang S., Fu C., Yang L., Zhou R., Wang B., Cao Y.	Combined Metabolomic and Transcriptomic Analysis Reveals Allantoin Enhances drought tolerance in Rice.	Int J Mol Sci	23(22)		2022		
53041	36437935	Huo X., Xiao J., Peng X., Lin Y., Liu D., Liu W., Liao Y., Li J., Zhu M., Fu C., Zeng X., Ma X., Kong L., Wang F.	The grain yield regulator <i>NOG1</i> plays a dual role in latitudinal adaptation and cold tolerance during rice domestication.	Front Genet	13	1039677	2022	NOG1	OsNOG1
53042	36466247	Aloryi K.D., Okpala N.E., Amo A., Bello S.F., Akaba S., Tian X.	A meta-quantitative trait loci analysis identified consensus genomic regions and candidate genes associated with grain yield in rice.	Front Plant Sci	13	1035851	2022		
53043	36507392	Wang J.Y., Braguy J., Chen G.E., Jamil M., Balakrishna A., Berqdar L., Al-Babili S.	Perspectives on the metabolism of strigolactone rhizospheric signals.	Front Plant Sci	13	1062107	2022		
53044	36483966	Saini M.R., Chandran L.P., Barbadikar K.M., Sevanthi A.M.V., Chawla G., Kaushik M., Mulani E., Phule A.S., Govindannagari R., Sonth B., Sinha S.K., Sundaram R.M., Mandal P.K.	Understanding plant-microbe interaction of rice and soybean with two contrasting diazotrophic bacteria through comparative transcriptome analysis.	Front Plant Sci	13	939395	2022		
53045	36518504	Takagi M., Hotamori K., Naito K., Matsukawa S., Egusa M., Nishizawa Y., Kanno Y., Seo M., Ifuku S., Mine A., Kaminaka H.	Chitin-induced systemic disease resistance in rice requires both OsCERK1 and OsCEBiP and is mediated <i>via</i> perturbation of cell-wall biogenesis in leaves.	Front Plant Sci	13	1064628	2022		
53046	36438096	Chen H., Zhai L., Chen K., Shen C., Zhu S., Qu P., Tang J., Liu J., He H., Xu J.	Genetic background- and environment-independent QTL and candidate gene identification of appearance quality in three MAGIC populations of rice.	Front Plant Sci	13	1074106	2022		
53047	36466223	Zhou Y., Cheng Z., Jiang S., Cen J., Wu D., Shu X.	High temperature boosts resistant starch content by altering starch structure and lipid content in rice <i>ssIIIa</i> mutants.	Front Plant Sci	13	1059749	2022		
53048	36449075	Koja Y., Joshima Y., Yoritaka Y., Arakawa T., Go H., Hakamata N., Kaseda H., Hattori T., Takeda S.	Formation of subcellular compartments by condensation-prone protein OsJAZ2 in Oryza sativa and Nicotiana benthamiana leaf cells.	Plant Cell Rep.	42(2)	269-286	2023		
53049	36466225	Ma J., Wei H., Yu X., Lv Y., Zhang Y., Qian Q., Shang L., Guo L.	Compared analysis with a high-quality genome of weedy rice reveals the evolutionary game of de-domestication.	Front Plant Sci	13	1065449	2022		
53050	36499349	Liu Z., Hu Y., Du A., Yu L., Fu X., Wu C., Lu L., Liu Y., Wang S., Huang W., Tu S., Ma X., Li H.	Cell Wall Matrix Polysaccharides Contribute to Salt-Alkali Tolerance in Rice.	Int J Mol Sci	23(23)		2022		
53051	36499144	Ma C., Yuan S., Xie B., Li Q., Wang Q., Shao M.	IAA Plays an Important Role in Alkaline Stress Tolerance by Modulating Root Development and ROS Detoxifying Systems in Rice Plants.	Int J Mol Sci	23(23)		2022		
53052	36441296	Zhang H., Li X., Xu Z., Zhao X., Wan Z., Cheng X., Liu Q., Gu M., Tang S.	The Effects of Rf4 and the Genetic Mechanism Behind Fertility Restoration of Wild Abortive Cytoplasmic male sterility (WA-CMS) in Japonica Rice (Oryza sativa ssp. Japonica).	Rice (N Y)	15(1)	59	2022		
53053	36417836	Behera D., Swain A., Karmakar S., Dash M., Swain P., Baig M.J., Molla K.A.	Overexpression of Setaria italica phosphoenolpyruvate carboxylase gene in rice positively impacts photosynthesis and agronomic traits.	Plant Physiol. Biochem.	194	169-181	2023		
53054	36449175	Luong N.H., Balkunde S.G., Shim K.C., Adeva C., Lee H.S., Kim H.J., Ahn S.N.	Characterization of Domestication Loci Associated with Awn Development in Rice.	Rice (N Y)	15(1)	61	2022		
53055	36430523	Wang L., Zhang X., She Y., Hu C., Wang Q., Wu L., You C., Ke J., He H.	Physiological Adaptation Mechanisms to Drought and Rewatering in Water-Saving and Drought-Resistant Rice.	Int J Mol Sci	23(22)		2022		
53056	36430940	Zhang C., Li N., Hu Z., Liu H., Hu Y., Tan Y., Sun Q., Liu X., Xiao L., Wang W., Wang R.	Mutation of <i>leaf senescence 1</i> Encoding a C2H2 Zinc Finger Protein Induces ROS Accumulation and Accelerates leaf senescence in Rice.	Int J Mol Sci	23(22)		2022	SAG12-2,SODA1,WRKY23,SGR,SODB,LS1,AOX1A,AOX1B,ICL,CATA,APX2	CP, OsSAG12-2,SodA1, OsSODA1, Mn-SOD, Mn- SOD, OsMSD, MnSOD, OsMnSOD, MnSOD1, OsMnSOD1,OsWRKY23,sgr(t), sgr, OsSGR, OsSgr, SGR1, OsSGR1,SodB, Fe-SOD, Fe- SOD, OsFe-SOD, Fe+-SOD, OsFe+-SOD, OsFe-SODa, OsFe-SODb, OsFeSODb, FeSODb, OsFSD1.2, FSD1.2, FeSOD2, OsFSD2, FSD2, OsFSD1, FSD1, ALM1, OsALM1,OsSRZ1, SRZ1, OsLS1,Ao1-1, AOX1a, OsAOX1a, AOX 1a,AOX1b, OsAOX1b,OsEnS-107, EnS-107, OsI85, I85, OsICL, Osl85, l43, Osl43, OsL85,CATA1, Cat A1*, OSCAT-A, Cat2, CatA1, CAT-A, OsCatA, OsCAT, CAT, catA, OSCATA, OsCATc, OsCATA, OsCAT1A, CAT1, OsCAT1, OsCATC, OsCAT2,OsAPX2, OsAPx02, APXb, OsAPx2, OSAPX2, APx2, cAPX, OsAPX1, APX1
53057	36429268	Zhu J., Li A., Sun C., Zhang J., Hu J., Wang S., Zhou N., Xiong Q.	Rice Quality-Related Metabolites and the Regulatory Roles of Key Metabolites in Metabolic Pathways of High-Quality Semi-Glutinous <i>japonica</i> Rice Varieties.	Foods	11(22)		2022		
53058	36403783	Feng Y.X., Li C.Z., Yang L., Yu X.Z.	Spatial-temporal variations of proline and related amino acids reveal distinct nitrogenous utilization strategies in rice during detoxification of exogenous cyanide.	Chem. Biol. Interact.	369	110267	2023		
53059	36657296	Yu Y., Guo D.D., Min D.H., Cao T., Ning L., Jiang Q.Y., Sun X.J., Zhang H., Tang W.S., Gao S.Q., Zhou Y.B., Xu Z.S., Chen J., Ma Y.Z., Chen M., Zhang X.H.	Foxtail millet MYB-like transcription factor SiMYB16 confers salt tolerance in transgenic rice by regulating phenylpropane pathway.	Plant Physiol. Biochem.	195	310-321	2023		
53060	36376330	Li L., Zhang H., Yang Z., Wang C., Li S., Cao C., Yao T., Wei Z., Li Y., Chen J., Sun Z.	Independently evolved viral effectors convergently suppress DELLA protein SLR1-mediated broad-spectrum antiviral immunity in rice.	Nat Commun	13(1)	6920	2022		
53061	36342212	Zhu X., Gou Y., Heng Y., Ding W., Li Y., Zhou D., Li X., Liang C., Wu C., Wang H., Shen R.	Targeted manipulation of grain shape genes effectively improves outcrossing rate and hybrid seed production in rice.	Plant Biotechnol. J.	21(2)	381-390	2023		
53062	36507384	Lu Y., Zhong Q., Xiao S., Wang B., Ke X., Zhang Y., Yin F., Zhang D., Jiang C., Liu L., Li J., Yu T., Wang L., Cheng Z., Chen L.	A new NLR disease resistance gene <i>Xa47</i> confers durable and broad-spectrum resistance to bacterial blight in rice.	Front Plant Sci	13	1037901	2022	PR10A,XA47,NH1,PR1A	PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,Xa47, OsXa47, Xa47(t),OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2, DLN5, OsDLN5,  OsBTBA1, BTBA1,OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1, OsPR1b, PR1alpha, OsPR1alpha
53063	36443368	Mu D.W., Feng N.J., Zheng D.F., Zhou H., Liu L., Chen G.J., Mu B.	Physiological mechanism of exogenous brassinolide alleviating salt stress injury in rice seedlings.	Sci Rep	12(1)	20439	2022		
53064	36498964	Wu L., Yue J., Wang J., Lu W., Huang M., Guo T., Wang H.	RNA-Seq and Genome-Wide Association Studies Reveal Potential Genes for Rice Seed Shattering.	Int J Mol Sci	23(23)		2022		
53065	36430643	Li C., Gong C., Wu J., Yang L., Zhou L., Wu B., Gao L., Ling F., You A., Li C., Lin Y.	Improvement of Rice Agronomic Traits by Editing Type-B Response Regulators.	Int J Mol Sci	23(22)		2022		
53066	36432844	Wang N., Wang S., Qi F., Wang Y., Lin Y., Zhou Y., Meng W., Zhang C., Wang Y., Ma J.	Autotetraploidization Gives Rise to Differential Gene Expression in Response to Saline Stress in Rice.	Plants (Basel)	11(22)		2022		
53067	36445461	Chen W.Q., Liu D.P., Li Z.X., Chen K., Luo J., Xu J.L.	Transcriptome analysis of knockout mutants of rice seed dormancy gene OsVP1 and Sdr4.	Plant Cell Rep.	42(2)	309-319	2023		
53068	36430507	Ma L., Yu Y., Li C., Wang P., Liu K., Ma W., Wang W., Fan Y., Xiong Z., Jiang T., Zhang J., Wang Z., Wang J., Zhang H., Bao Y.	Genome-Wide Association Study Identifies a Rice Panicle Blast Resistance Gene <i>Pb3</i> Encoding NLR Protein.	Int J Mol Sci	23(22)		2022	PB3	Pb3, OsPB3
53069	36443862	Dharni J.S., Dhatt B.K., Paul P., Gao T., Awada T., Bacher H., Peleg Z., Staswick P., Hupp J., Yu H., Walia H.	A non-destructive approach for measuring rice panicle-level photosynthetic responses using 3D-image reconstruction.	Plant Methods	18(1)	126	2022		
53070	36376791	Wang X., Zhao Y., Jiang C., Wang L., Chen L., Li F., Zhang Y., Pan Y., Zhang T.	Evolution of different rice ecotypes and genetic basis of flooding adaptability in Deepwater rice by GWAS.	BMC Plant Biol.	22(1)	526	2022		
53071	36432867	Zhong K., Xie L., Hu S., Shao G., Sheng Z., Jiao G., Wang L., Chen Y., Tang S., Wei X., Zhang P., Hu P.	Genome-Wide Association Study of Zinc Toxicity Tolerance within a Rice Core Collection (<i>Oryza sativa</i> L.).	Plants (Basel)	11(22)		2022		
53072	36397176	Song X., Xiong Y., Kong X., Huang G.	Roles of auxin response factors in rice development and stress responses.	Plant Cell Environ.	46(4)	1075-1086	2023		
53073	36595935	Wang M., Yan F., Zhou H.	Protocol for targeted modification of the rice genome using base editing.	STAR Protoc	3(4)	101865	2022		
53074	36441396	Zhao M., Wang Y., He N., Pang X., Wang L., Ma Z., Tang Z., Gao H., Zhang L., Fu L., Wang C., Liu J., Zheng W.	QTL Detection for Rice Grain Length and Fine Mapping of a Novel Locus qGL6.1.	Rice (N Y)	15(1)	60	2022		
53075	36414883	Hou J., Chen H., Zhang K., Liu W., Cao C., Ruan Y., Deng Y., Liu Y., Yuan X., Sun C., Fu Y.	The GZnC1 variant from common wild rice influences grain Zn content.	Plant Mol. Biol.	111(3)	263-273	2023		
53076	36435898	SubbuThavamurugan, Dhivyadharchini M., Suresh P., Manikandan T., Vasuki A., Nandhagopalan V., Prabha A.M.L.	Investigation on Nutritional, Phytochemical, and Antioxidant Abilities of Various Traditional Rice Varieties.	Appl. Biochem. Biotechnol.	195(4)	2719-2742	2023		
53077	36553515	Nguyen T., Shen S., Cheng M., Chen Q.	Identification of QTLs for heat tolerance at the Flowering Stage Using Chromosome Segment Substitution Lines in Rice.	Genes (Basel)	13(12)		2022		
53078	36552248	Lin D., Zhang T., Chen Y., Fan M., Kong R., Chen L., Wang Y., Xu J., Dong Y.	Rice <i>TCD8</i> Encoding a multi-domain GTPase Is Crucial for Chloroplast Development of Early Leaf Stage at Low Temperatures.	Biology (Basel)	11(12)		2022	PSAA,V4,V1,CAB1R,PSBA,TCD5,YGL1,V3,PDD,RPOTP,TCD10,RPOA,RPOB,RBCS	PsaA, psaA, PsAA1, psaA1,OsV4,v1, NUS1,OsV1, OsNUS1,cab1R, LHCP, CAB, OsLhcb1, Lhcb1, Cab1, OsCAB1, Lhcb1b, OsLhcb1b, CAB2R,PsbA, psbA, OsPsbA, PSBD1, OsPSBD1, psbD1,OsTCD5, TSV, OsTSV, CSV1, OsCSV1,OsYGL1, CHLG, Ygl1, CS, OsCHLG,v3, RNRL1, rnrl1, RNR1, RNRL, Osv3, OsRNRL1, OsRNR1, OsRNRL,OsPDD, TCD8, OsTCD8,OsRpo Tp, OsRpoTp, NEP, RpoTp, rpoTP2,OsTCD10,rope, rpoalpha, Rpoalpha, rope, RpoA ,rpoB, RpoB, Rpobeta,rbcS, OsRbcS, RBCS-C, RbcS2, OsRBCS2, RbcS1, OsRbcS2, OsrbcS1
53079	36434522	Liu D., Zeng M., Wu Y., Du Y., Liu J., Luo S., Zeng Y.	Comparative transcriptomic analysis provides insights into the molecular basis underlying pre-harvest sprouting in rice.	BMC Genomics	23(1)	771	2022		
53080	36435087	Zhang G., Xu J., Wang Y., Sun X., Huang S., Huang L., Liu Y., Liu H., Sun J.	Combined transcriptome and metabolome analyses reveal the mechanisms of ultrasonication improvement of brown rice germination.	Ultrason Sonochem	91	106239	2022		
53081	36437744	Ashraf U., Hussain S., Naveed Shahid M., Anjum S.A., Kondo M., Mo Z., Tang X.	Alternate wetting and drying modulated physio-biochemical attributes, grain yield, quality, and aroma volatile in fragrant rice.	Physiol Plant	174(6)	e13833	2022		
53082	36447653	Ercoli M.F., Ramos P.Z., Jain R., Pilotte J., Dong O.X., Thompson T., Wells C.I., Elkins J.M., Edwards A.M., Cou&#xf1;ago RM., Drewry D.H., Ronald P.C.	An open source plant kinase chemogenomics set.	Plant Direct	6(11)	e460	2022		
53083	36359857	Dash P.K., Gupta P., Pradhan S.K., Shasany A.K., Rai R.	Analysis of Homologous Regions of Small RNAs <i>MIR397</i> and <i>MIR408</i> Reveals the Conservation of Microsynteny among Rice Crop-Wild Relatives.	Cells	11(21)		2022		
53084	36350485	Parthasarathy R., Jayabaskaran C., Manikandan A., Anusuya S.	Synthesis of Nickel-Chitosan Nanoparticles for Controlling Blast Diseases in Asian Rice.	Appl. Biochem. Biotechnol.	195(3)	2134-2148	2023		
53085	36365406	Faysal A.S.M., Ali L., Azam M.G., Sarker U., Ercisli S., Golokhvast K.S., Marc R.A.	Genetic Variability, Character Association, and Path Coefficient Analysis in Transplant Aman Rice Genotypes.	Plants (Basel)	11(21)		2022		
53086	36439835	Tian D., Deng Y., Yang X., Li G., Li Q., Zhou H., Chen Z., Guo X., Su Y., Luo Y., Yang L.	Association analysis of rice resistance genes and blast fungal avirulence genes for effective breeding resistance cultivars.	Front Microbiol	13	1007492	2022		
53087	36405863	Naveenkumar R., Anandan A., Singh V., Prabhukarthikeyan S.R., Parameswaran C., Sangeetha G., Mahender A., Keerthana U., Singh P.K., Patra B.C., Ali J.	Deciphering environmental factors and defense response of rice genotypes against sheath blight disease.	Physiol. Mol. Plant Pathol.	122	101916	2022		
53088	36468122	Mlangeni A.T., Raab A., Feldmann J.	Alleviating cobalt and lead toxicity in rice using zero valent iron (Fe&#xb0;) amendments.	Heliyon	8(11)	e11928	2022		
53089	36407628	Xu Y., Miao Y., Cai B., Yi Q., Tian X., Wang Q., Ma D., Luo Q., Tan F., Hu Y.	A histone deacetylase inhibitor enhances rice immunity by derepressing the expression of defense-related genes.	Front Plant Sci	13	1041095	2022		
53090	36323756	Tan H.Q., Palyam S., Gouda J., Kumar P.P., Chellian S.K.	Identification of two QTLs, BPH41 and BPH42, and their respective gene candidates for brown planthopper resistance in rice.	Sci Rep	12(1)	18538	2022	BPH41,BPH42	Bph41, OsBPH41,Bph42, OsBPH42
53091	36420042	He L., Wang H., Sui Y., Miao Y., Jin C., Luo J.	Genome-wide association studies of five free amino acid levels in rice.	Front Plant Sci	13	1048860	2022		
53092	36362403	Li P., Li Q., Lu X., Dai L., Yang L., Hong Y., Yan T., Shen L., Zhang Q., Ren D., Zhu L., Hu J., Dong G., Zhang G., Qian Q., Zeng D.	Genome-Wide Association Study Reveals Novel QTLs and Candidate Genes for Grain Number in Rice.	Int J Mol Sci	23(21)		2022		
53093	36421767	Bao G., Huang S., Ashraf U., Qiao J., Zheng A., Zhou Q., Li L., Wan X.	Insights of Improved Aroma under Additional Nitrogen Application at Booting Stage in Fragrant Rice.	Genes (Basel)	13(11)		2022		
53094	36335190	Hore T.K., Inabangan-Asilo MA., Wulandari R., Latif M.A., Nihad S.A.I., Hernandez J.E., Gregorio G.B., Dalisay T.U., Diaz M.G.Q., Ch B., Swamy B.P.M.	Introgression of tsv1 improves tungro disease resistance of a rice variety BRRI dhan71.	Sci Rep	12(1)	18820	2022		
53095	36321201	Xie Y., Wang Y., Yu X., Lin Y., Zhu Y., Chen J., Xie H., Zhang Q., Wang L., Wei Y., Xiao Y., Cai Q., Zheng Y., Wang M., Xie H., Zhang J.	SH3P2, an SH3 domain-containing protein that interacts with both Pib and AvrPib, suppresses effector-triggered, Pib-mediated immunity in rice.	Mol Plant	15(12)	1931-1946	2022	_,PR10B,SH3P2,PIB,PR10A	PR10, OsPR10C, PR10C,RPR10b, PR-10b, PR10b, PBZ1, PBZ-1, OsPBZc, OsPR10b, BetV, OsBetV,OsSH3P2,Pi b(Pi s), Pis, Pib, Pi-s, Pi-hy,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 
53096	36326728	Wang X.D., Zhang C.Y., Yuan Y., Hua Y.F., Asami T., Qin Y., Xiong X.H., Zhu J.L., Lu Y.C.	Molecular Responses and Degradation Mechanisms of the Herbicide Diuron in Rice Crops.	J. Agric. Food Chem.	70(45)	14352-14366	2022		
53097	36334127	Singh V.S., Dubey B.K., Rai S., Singh S.P., Tripathi A.K.	Engineering D-glucose utilization in Azospirillum brasilense Sp7 promotes rice root colonization.	Appl. Microbiol. Biotechnol.	106(23)	7891-7903	2022		
53098	36322663	Ito S., Braguy J., Wang J.Y., Yoda A., Fiorilli V., Takahashi I., Jamil M., Felemban A., Miyazaki S., Mazzarella T., Chen G.E., Shinozawa A., Balakrishna A., Berqdar L., Rajan C., Ali S., Haider I., Sasaki Y., Yajima S., Akiyama K., Lanfranco L., Zurbriggen M.D., Nomura T., Asami T., Al-Babili S.	Canonical strigolactones are not the major determinant of tillering but important rhizospheric signals in rice.	Sci Adv	8(44)	eadd1278	2022		
53099	36464358	Ma G., Zhang Y., Li X.	Dufulin enhances salt resistance of rice.	Pestic Biochem Physiol	188	105252	2022		
53100	35904136	Ermakova M., Heyno E., Woodford R., Massey B., Birke H., von Caemmerer S.	Enhanced abundance and activity of the chloroplast ATP synthase in rice through the overexpression of the AtpD subunit.	J. Exp. Bot.	73(19)	6891-6901	2022		
53101	36643763	Liu M., Guo C., Xie K., Chen K., Chen J., Wang Y., Wang X.	A cross-species co-functional gene network underlying leaf senescence.	Hortic Res	10(1)	uhac251	2023		
53102	36353600	Roy D., Biswas A., Sarkar S., Chakraborty G., Gaber A., Kobeasy M.I., Hossain A.	Evaluation and characterization of indigenous rice (<i>Oryza sativa</i> L.) landraces resistant to brown planthopper <i>Nilaparvata lugens</i> (St<i>&#xe5;</i>l.) biotype 4.	PeerJ	10	e14360	2022		
53103	36432253	Kaur M., Shen C., Wang L., Xu M.	Exploration of Single and Co-Toxic Effects of Polypropylene Micro-Plastics and Cadmium on Rice (<i>Oryza sativa</i> L.).	Nanomaterials (Basel)	12(22)		2022		
53104	36326916	Chen W., Hu X., Hu L., Hou X., Xu Z., Yang F., Yuan M., Chen F., Wang Y., Tu B., Li T., Kang L., Tang S., Ma B., Wang Y., Li S., Qin P., Yuan H.	Wide Grain 3, a GRAS Protein, Interacts with DLT to Regulate grain size.and Brassinosteroid Signaling in Rice.	Rice (N Y)	15(1)	55	2022	WG3,DLT	OsSCRL, SCRL, Os-SCL7, OsSCL7, SCL7, OsGRAS-19, OsGRAS19, GRAS-19, GRAS19, OsGRAS18, GRAS18 ,dlt, OsGRAS32, OsDLT, OsDLT1, DTL1, OsGRAS-32, OsGRAS32, GRAS-32, GRAS32, SMOS2/DLT, SMOS2, OsSMOS2, OsGS6, GS6
53105	36388603	Ju C., Ma X., Han B., Zhang W., Zhao Z., Geng L., Cui D., Han L.	Candidate gene discovery for salt tolerance in rice (<i>Oryza sativa</i> L.) at the germination stage based on genome-wide association study.	Front Plant Sci	13	1010654	2022		
53106	36052968	Deng Z., Liu Y., Gong C., Chen B., Wang T.	Waxy is an important factor for grain fissure resistance and head rice yield as revealed by a genome-wide association study.	J. Exp. Bot.	73(19)	6942-6954	2022		
53107	36326973	Sun K., Li D., Xia A., Zhao H., Wen Q., Jia S., Wang J., Yang G., Zhou D., Huang C., Wang H., Chen Z., Guo T.	Targeted Identification of Rice Grain-Associated Gene Allelic Variation Through Mutation Induction, Targeted Sequencing, and Whole Genome Sequencing Combined with a Mixed-Samples Strategy.	Rice (N Y)	15(1)	57	2022		
53108	36326888	Singh R.K., Muthamilarasan M., Prasad M.	SiHSFA2e regulated expression of SisHSP21.9 maintains chloroplast proteome integrity under high temperature stress.	Cell. Mol. Life Sci.	79(11)	580	2022		
53109	36420017	Lu Y., Yao K., Gong Z., Zhang Y., Meng Y., Liu Q.	Molecular manipulations of miR398 increase rice grain yield under different conditions.	Front Plant Sci	13	1037604	2022		
53110	36567764	Tan Q., He H., Chen W., Huang L., Zhao D., Chen X., Li J., Yang X.	Integrated genetic analysis of leaf blast resistance in upland rice: QTL mapping, bulked segregant analysis and transcriptome sequencing.	AoB Plants	14(6)	plac047	2022		
53111	36407584	Tabassum J., Raza Q., Riaz A., Ahmad S., Rashid M.A.R., Javed M.A., Ali Z., Kang F., Khan I.A., Atif R.M., Luo J.	Exploration of the genomic atlas of Dof transcription factor family across genus <i>Oryza</i> provides novel insights on rice breeding in changing climate.	Front Plant Sci	13	1004359	2022		
53112	36362182	Fan Z., Huang G., Fan Y., Yang J.	Sucrose Facilitates Rhizome Development of Perennial Rice (<i>Oryza longistaminata</i>).	Int J Mol Sci	23(21)		2022		
53113	0	CHEN Ting, CHEN Zheng, Atul Prakash SATHE, ZHANG Zhihong, LI Liangjian, SHANG Huihui, TANG Shaoqing, ZHANG Xiaobo, WU Jianli	Characterization of a Novel Gain-of-Function Spotted-Leaf Mutant with Enhanced disease resistance in Rice	Rice Science	26(6)	372-383	2019	_	SPL26, OsSPL26, OsSpl26
53114	0	Zhang Z., Sun X., Ma X., Xu B., Zhao Y., Ma Z., Li G., Najeeb Ullah Khan, Pan Y., Liang Y., Zhang H., Li J., Li Z.	gnp6, a novel allele of MOC1, regulates panicle and tiller development in rice	The Crop Journal	9	57-67	2021	MOC1	moc1, OsMOC1, OsGRAS-33, OsGRAS33, GRAS-33, GRAS33, GNP6, OsGNP6
53115	0	Guangming LouPingli Chen, Zhou H., Li P., Xiong J., Wan S., Zheng Y., Alam M., Liu R., Zhou Y., Yang H., Tian Y., Bai J., Rao W., Tan X., Gao H., Li Y., Gao G., Zhang Q., Li X., Liu C., He Y.	FLOURY ENDOSPERM19 encoding a class I glutamine amidotransferase affects grain quality in rice	Molecular Breeding	41(36)		2021	_	FLO19, OsFLO19
53116	0	Xu Z., Chen Z., Wang R., Miao Y., Gao H., Tang S., Zhang H., Liu Q.	Characterization and fine-mapping of qHd2-1, a minor quantitative locus that affects heading date under long-day conditions in rice (Oryza sativa L.)	Molecular Breeding	40(27)		2020	HD3A,MADS60,RFT1	Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,OsMADS60, qHd2-1,FT-L 3, OsFTL3, FTL3, FT-L3, RFT, OsRFT1
53117	0	Yuan X., Sun H., Tang Z., Tang H., Zhang H., Huang J.	A Novel Little Membrane Protein Confers salt tolerance in Rice (Oryza sativa L.)	Plant Molecular Biology Reporter volume	34	524-532	2015	P5CS,SALP1	OsP5CS, P5CS1, OsP5CS1, OsALDH18B1, ALDH18B1, OsP5CS-1, P5CS-1,OsSALP1
53118	0	Lee J., Jang S., Ryu S., Lee S., Park J., Lee S., An G., Soon Ki Park	Impaired Plastid Ribosomal Protein L3 Causes Albino Seedling Lethal Phenotype in Rice	Journal of Plant Biology	62	419-428	2019	PRPL3L1,PRPL3	OsPRPL3L1,OsPRPL3
53119	0	Zhang X., Zhang B., Ming Juan Li, Xu Ming Yin, Li Fang Huang, Yan Chun Cui, Man Ling Wang, Xia X.	OsMSR15 encoding a rice C2H2-type zinc finger protein confers enhanced drought tolerance in transgenic Arabidopsis	Journal of Plant Biology	59	271-281	2016	MSR15	OsMSR15
53120	0	Munsif Ali Shad, Wang Y., Zhang H., Zhai S., Shalmani A., Li Y.	Genetic analysis of GEFs and GDIs in rice reveals the roles of OsGEF5, OsGDI1, and OsGEF3 in the regulation of grain size and plant height	The Crop Journal	11	345-360	2023	RCC1-6,ROPGEF8,RHOGDI3,GDI6,SEC7-7,GDI5,GDI1,GDI4,ROPGEF2,SEC7-4,ROPGEF5,ROPGEF6,RHOGDI1,NTF2,ROPGEF9,LK3,RAB5-GEF2,GEF23,RCC1-5,SPK1,SEC7-8,SEC7-1,VPS9A,UVR8B,YBAK,UVR8A,SEC7-2,SEC7-6,SEC7-5,BGL,RHOGDI2,RCC1-4,RCC1-3,GDI2,MOG1,GDI3,ROPGEF1,ROPGEF11/12,ROPGEF3,SEC7-3,ROPGEF7	OsRCC1-6, OsGE13, GEF13, OsFYVE08, OsFYVE8, FYVE08, FYVE8,Os RopGEF8, OsRopGEF8, RopGEF8, OsGEF27, GEF27,OsRhoGDI3, RhoGDI3, OsGDI8, GDI8,OsGDI6,OsSEC7-7, OsGEF14, GEF14,OsGDI5,OsGDI1,OsGDI4,Os RopGEF2, OsRopGEF2, RopGEF2, OsSTA159, OsGEF29, GEF29,OsSEC7-4, OsGEF1, GEF1,OsRacGEF1, RacGEF1, OsRopGEF5, Os RopGEF5, RopGEF5, OsRopGEF7B, RopGEF7B, OsGEF19, GEF19,Os RopGEF6, OsRopGEF6, RopGEF6, OsGEF28, GEF28,OsRhoGDI1, RhoGDI1, OsGDI9, GDI9,OsNTF2, OsGDI10, GDI10,Os RopGEF9, OsRopGEF9, RopGEF9, OsGEF24, GEF24,lk3(t), lk3(t)*, SG3, GS3, SG3-GS3, OsGW3, OsGS3, RGG3/GS3/Mi/OsGGC1, RGG3, Mi, OsGGC1, GGC1, OsSYL3, SYL3, TT2, OsTT2,Rab5-GEF2, OsRab5-GEF2, Rab5GEF2, OsRab5GEF2, OsVPS9B, VPS9B, OsGEF31, GEF31,OsRopGEF4, RopGEF4, OsGEF23,OsRCC1-5, OsGE12, GEF12, OsFYVE05, OsFYVE5, FYVE05, FYVE5,OsSPK1, OsGEF5, GEF5,OsSEC7-8, OsGEF2, GEF2,OsSEC7-1, OsGEF15, GEF15,OsVPS9A, OsGEF30, GEF30,OsUVR8b, UVR8b, OsRCC1-2, RCC1-2, OsGEF9, GEF9,OsGEF3, GEF3, OsYbaK, YbaK,OsUVR8a, UVR8a, OsRCC1-1, RCC1-1, OsGEF10, GEF10,OsSEC7-2, OsGEF17, GEF17,OsSEC7-6, OsGEF18, GEF18,OsSEC7-5, OsGEF16, GEF16,bgl, OsRopGEF10, Os RopGEF10, RopGEF10, OsGEF21, GEF21, SPD25, OsSPD25,OsRhoGDI2, RhoGDI2, OsGDI7, GDI7,OsRCC1-4, OsGEF8, GEF8,OsRCC1-3, OsGEF11, GEF11,OsGDI2, OsGDI3, GDI3,OsMog1, Mog1, OsGEF6, GEF6,OsGDI3, OsGDI2, GDI2,Os RopGEF1, OsRopGEF1, RopGEF1, OsRacGEF7, RacGEF7, OsGEF22, GEF22,Os RopGEF11, OsRopGEF11, RopGEF11, Os RopGEF12, OsRopGEF12, RopGEF12, OsRopGEF11/12, OsGEF25, GEF25,Os RopGEF3, OsRopGEF3, RopGEF3, OsGEF26, GEF26,OsSEC7-3, OsGEF7, GEF7,Os RopGEF7, OsRopGEF7, RopGEF7, OsRacGEF2, RacGEF2, OsRacGEF1, RacGEF1, OsGEF20, GEF20
53121	0	Peng Q., Qiu J., Li X., Xu X., Peng X., Zhu G.	The nuclear export receptor osxpo1 is required for rice development and involved in abiotic stress responses	The Crop Journal	11	71-78	2023	RAN2,RAN1,XPO1	OsRAN2,OsRAN1,OsXPO1
53122	0	Suhas Gorakh KARKUTE, Vishesh KUMAR, Mohd TASLEEM, Dwijesh Chandra MISHRA, Krishna Kumar CHATURVEDI, Anil R.A.I., Amitha Mithra SEVANTHI, Kishor GAIKWAD, Tilak Raj Sharma, Amolkumar U. SOLANKE	Genome-Wide Analysis of von Willebrand factor A Gene Family in Rice for Its Role in Imparting Biotic Stress Resistance with Emphasis on Rice Blast Disease	Rice Science	29(4)	375-384	2022	VWA19,RING89,VWA22,VWA1,RING416,RING138,RING85,BON1 ,VWA28,RING212,RING317,VWA23,RING84,PFT1,SOR1,VWA32,RFPHC-2,RING88,RFPH2-15,RING86,VWA21,VWA11,VWA40,VWA36,RING104,TFIIH-P44,RING209,VWA35,VWA37,S5A,RFPH2-9,VWA33,VWA18,RING182,BON3,VWA4,VWA10,VWA17,YGL98,VWA34	OsvWA19, vWA19,OsRING89, OsvWA26, vWA26, OsRGLG6, RGLG6,OsvWA22, vWA22,OsvWA1, vWA1,OsRING416, OsvWA30, vWA30,OsRING138, OsvWA24, vWA24,OsRING85, OsvWA39, vWA39, OsRGLG2, RGLG2,OsBON1, OsC2DP18, C2DP18, OsvWA5, vWA5,OsvWA28, vWA28,OsRING212, OsvWA38, vWA38,OsRFP,  OsRING317, OsvWA14, vWA14,OsvWA23, vWA23,OsRING84, OsvWA20, vWA20, OsRGLG5, RGLG5,OsPFT1, OsMED25_1, MED25_1, OsMED25, MED25, OsvWA27, vWA27,MHZ2, OsMHZ2, OsSOR1, OsRING272, RING272, OsvWA13, vWA13,OsvWA32, vWA32,OsRFPHC-2, OsRING87, RING87, OsvWA25, vWA25, OsRGLG4, RGLG4,OsRING88, OsvWA3, vWA3, OsRGLG3, RGLG3,OsRFPH2-15,  OsRING316, RING316, OsvWA6, vWA6,OsRFP,  OsRING86, OsvWA2, vWA2, OsRGLG1, RGLG1,OsvWA21, vWA21,OsvWA11, vWA11,OsvWA40, vWA40,OsvWA36, vWA36,OsRING104, OsvWA7, vWA7,OsvWA15, vWA15,OsRING209, OsvWA29, vWA29,OsvWA35, vWA35,OsvWA37, vWA37,OsS5a, S5a, OsRpn10, Rpn10, OsvWA9, vWA9,OsRFPH2-9, OsRING129, RING129, OsvWA8, vWA8,OsvWA33, vWA33,OsvWA18, vWA18,OsRING182, OsvWA31, vWA31,OsBON3, OsC2DP45, C2DP45, OsvWA16, vWA16,OsvWA4, vWA4,OsvWA10, vWA10,OsvWA17, vWA17,OsChlD, ChlD, CHLD, OsCHLD, Ygl7, YGL3, OsvWA12, vWA12,OsvWA34, vWA34
53123	0	GAO Xiuying, ZHANG Ye, ZHANG Hongsheng, HUANG Ji	A beta-ketoacyl-CoA synthase OsCUT1 Confers Increased drought tolerance in Rice	Rice Science	29(4)	353-362	2022	CUT6,CUT7,ONI1,CUT2,CUT5,ONI2,CUT3,CUT1,CUT8	OsCUT6,OsCUT7, OsKCS16, KCS16,OsONI1, FDH, OsCUT4, CUT4, OsKCS7, KCS7,OsCUT2, OsKCS3, KCS3,OsCUT5, OsKCS15, KCS15,OsONI2, OsCUT9, CUT9, OsKCS20, KCS20,OsCUT3, OsKCS6, KCS6,OsCUT1, OsKCS1, KCS1,OsCUT8
53124	0	WANG Tao, LOU Lijuan, LI Zeyu, SHANG Lianguang, WANG Quan	Cloning and Characterization of Protein Prenyltransferase Alpha Subunit in Rice	Rice Science,	28(6)	557-566	2021	PGGTI-BETA,PFT-ALPHA,ERA1	OsPGGT I-beta, PGGT I-beta,OsPFT-alpha, OsPGGT I-alpha, OsPFT/OsPGGT I-alpha,OsERA1, OsERA1.1, OsERA1.2, OsABA1, ABA1, OsPFT-beta, PFT-beta
53125	0	Sung Don Lim, Jong Ho Kim, Lee J., Sun-Goo Hwang, Su-Hyeon Shim, Jong-Seong Jeon, Cheol Seong Jang	Role of OsCZMT1 in Na+ and Mg2+ transport and salinity insensitivity	Environ. Exp. Bot.	194		2022	STIL1	OsCZMT1, OsCZMT1, OsSTIL1
53126	0	Da-Yea Park, Shim Y., Gi E., Byoung-Doo Lee, An G., Kang K., Nam-Chon Paek	The MYB-related transcription factor RADIALIS-LIKE3 (osrl3) functions in ABA-induced leaf senescence and salt sensitivity in rice	Environ. Exp. Bot.	156	86-95	2018	RL3	OsRL3
53127	0	Du C., Cai W., Lin F., Wang K., Li S., Chen C., Tian H., Wang D., Zhao Q.	Leucine-rich repeat receptor-like kinase OsASLRK regulates abscisic acid and drought responses via cooperation with S-like RNase OsRNS4 in rice	Environ. Exp. Bot.	201		2022	ASLRK,RNS4	OsASLRK,OsRNS4, OsRRP, RNaseDIS
53128	0	Zheng S., Liu S., Feng J., Wang W., Wang Y., Yu Q., Liao Y., Mo Y., Xu Z., Li L., Gao X., Ji X., Zhu J., Chen R.	Overexpression of a stress response membrane protein gene OsSMP1 enhances rice tolerance to salt, cold and heavy metal stress	Environ. Exp. Bot.	182		2021	SMP1	OsSMP1
53129	0	Jae-Wan Jung, Seong]Ryong Kim	Beta 1,3-galactosyltransferase on chromosome 6 is essential for the formation of Lewis a structure on N- glycan in Oryza sativa	Transgenic Res.			2022	_	GalT
53130	0	Wang Z., Lv J., Xie S., Zhang Y., Qiu Z., Chen P., Cui Y., Niu Y., Hu S., Jiang H., Ge S., HaiPhuong Trinh, Lei K., Bai W., Zhang Y., Guo L., Ren D.	OsSLA4 encodes a pentatricopeptide repeat protein essential for early chloroplast development and seedling growth in rice	Plant Growth Regul.	84	249-260	2018	SLA4	OsSLA4
53131	0	Zhu Y., Yan P., Dong S., Hu Z., Wang Y., Yang J., Xin X., Luo X.	Map-based cloning and characterization of YGL22, a new yellow-green leaf gene in rice (Oryza sativa)	Crop Sci.	61(1)	529-538	2020	YGL22	OsYGL22
53132	0	Gong X., Zhang Z., Yue J., Tang W., Tang X., Zeng Z., Niu X., Chen D., Sang X., Xiao F., He G., Liu Y.	Phenotypic Characterization, Fine Mapping, and Altered Expression Profiling of roses1 Mutation That Affects Organ Size and Water Loss Through Regulating Stomatal Density in Rice	Crop Sci.	58	486-506	2018	SAUR28,MYB44,EFA27,ROSES1,PLDalpha1,CAX1A,RALF37,GPT1,TBP2,NGA1,VTI12,RLCK222	OsSAUR28,R2R3-MYB, OsMYB44,OsEFA27, OsClo5, Clo5, RD20, OsRD20,OsROSES1,RPLD1, PLD1, OsPLDalpha1, OsC2DP2, C2DP2,OsCAX1a, CAX1a, CAX1, OsCAX1, OsNCX2, OsNCX2.1, OsNCX2.2, NCX2, OsVCAX1a,OsRALF-37, OsRALF37, RALF-37,OsGPT1, OsGPT2, GPT2,TBPOs-2, OsTBP2, OsRpt2a, Rpt2a, OsRPT2a,OsNGA1,OsVTI12,OsRLCK222
53133	36639938	Kim Nhung Ta, Mari W Yoshida, Tezuka T., Sae Shimizu-Sato, Misuzu Nosaka-Takahashi, Toyoda A., Suzuki T., Goshima G., Sato Y.	Control of Plant Cell Growth and Proliferation by MO25A, a Conserved Major Component of the Mammalian Sterile 20-Like Kinase Pathway.	Plant Cell Physiol.	64(3)	336-351	2023	MO25A2,MO25B2,MO25B1,MO25A1	OsMO25A2,OsMO25B2,OsMO25B1,OsMO25A1
53134	36651501	Hu X., Yu P., Zhang Y., Gao Z., Sun B., Wu W., Deng C., Abbas A., Hong Y., Sun L., Liu Q., Xue P., Wang B., Zhan X., Cao L., Cheng S.	Mutation of DEFECTIVE EMBRYO SAC1 results in a low seed-setting rate in rice by regulating embryo sac development.	J. Exp. Bot.	74(5)	1501-1516	2023	DES1,LOG1,PHP3,RR10,RR9,HST1,RR4,PHP1,AHP2,RR26,HK3,AHP1,RR21,PHP2,HK4,RR1	OsDES1,OsLOG1, LOG, Log, log, OsLOG,OsPHP3, Hpt5, OsHP4, HP4, OsHpt5, OsHpt5a, OsHpt5b, OsHpt5c,OsRR10, Rra2, OsRRA2, RR2,OsRR9, Rra1, OsRRA1, OsRR10, RR10,RR22, OsRR22, Rrb4, Orr2, OsRR20, OsRRB4, OsHST1,rr4, OsRR4, Rra3, OsRRA3,OsPHP1, Hpt1, OsHP3, sHP3, OsHpt1,OHP2, HPt, OsAHP2 Hpt3, Ohp2, OsHP1, HP1, OsHpt3, OsHP01,OsRR26, Rrb6, Orr6, OsRR16, RR16, OsRRB6,OHK2, HK, OsHK3, Ohk, Crl2, Ohk2, OsHK3b, OsHK03,OHP1, HPt, OsAHP1, Hpt2, Ohp1, OsHP2, HP2, OsHpt2, OsHPt2, OsHP02,OsRR21, Rrb1, Orr1, OsRR19, RR19, OsRRB1, ORR1,OsPHP2, Hpt4, OsHP5, HP5, OsHpt4, OsHP05,OHK4, HK, OsHK4, Crl1b, Ohk4,rr1, OsRR1, Rra9, OsRRA9
53135	33467721	Kamara N., Jiao Y., Lu Z., Aloryi K.D., Wu J., Liu X., Shahid M.Q.	Cytological Observations and Bulked-Segregant Analysis Coupled Global Genome Sequencing Reveal Two Genes Associated with pollen Fertility in Tetraploid Rice.	Int J Mol Sci	22(2)		2021	NY1,NY2	OsNY1, OsMAIL1, MAIL1,OsNY2
53136	19825626	Steiner S., Dietzel L., Yvonne Schr&#xf6;ter, Fey V., Wagner R., Pfannschmidt T.	The role of phosphorylation in redox regulation of photosynthesis genes psaA and psbA during photosynthetic acclimation of mustard.	Mol Plant	2(3)	416-29	2009	PSAA	PsaA, psaA, PsAA1, psaA1
53137	15793573	Jacqueline A Paine, Catherine A Shipton, Chaggar S., Rhian M Howells, Mike J Kennedy, Vernon G., Susan Y Wright, Hinchliffe E., Jessica L Adams, Aron L Silverstone, Drake R.	Improving the nutritional value of Golden Rice through increased pro-vitamin A content.	Nat. Biotechnol.	23(4)	482-7	2005	PSY1	OsPSY1 
53138	0	Moon S., Anil Kumar Nalini Chandran, Yu-Jin Kim, Gho Y., Woo-Jong Hong, An G., Lee C., Ki-Hong Jung	Rice RHC Encoding a Putative Cellulase is Essential for Normal root hair Elongation	Journal of Plant Biology	62	82-92	2019	CSLD1,GH9C1	csld1, OsCSLD1, OsCslD1,OsGH9C1, RHC, OsRHC
53139	36718554	Natsuko I Kobayashi, Takagi H., Yang X., Ayako Nishizawa-Yokoi, Segawa T., Hoshina T., Oonishi T., Suzuki H., Iwata R., Toki S., Tomoko M Nakanishi, Tanoi K.	Mutations in RZF1, a zinc-finger protein, reduce magnesium uptake in roots and translocation to shoots in rice.	Plant Physiol.	192(1)	342-355	2023	LMGC1	SRZ3, OsSRZ3, OsLMGC1, RZF1, OsRZF1
53140	0	Wang T., Ma Y., Huang X., Mu T., Li Y., Li X., Liu X., Hou B.	Overexpression of OsUGT3 enhances drought and salt tolerance through modulating ABA synthesis and scavenging ROS in rice	Environ. Exp. Bot.	192		2021	UGT3	qRA2, OsUGT3
53141	0	Teng Y., Lv M., Zhang X., Cai M., Chen T.	BEAR1, a bHLH Transcription Factor, Controls Salt Response Genes to Regulate Rice Salt Response	Journal of Plant Biology	65	217-230	2022	NHX4,HAK6,SAP1,DREB1F, BHLH120,WRKY109,LEA3-1,BHLH14,ONAC2	OsNHX4,OsHAK6, OsSTA42,Osi-SAP1, ISAP1, OsiSAP1, OSISAP1, OsSAP1,OsERF#027, OsERF027, OsERF27, ERF27, AP2/EREBP#081, AP2/EREBP81, OsDREB1F,OsbHLH120, bHLH120,OsWRKY109,OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3, OsLEA3A, LEA3A,OsbHLH014, bHLH014, bHLH14, BEAR1, OsBEAR1,SNAC1, snac1, OsNAC9, ONAC002, ONAC2, ONAC033, ONAC33, ONAC043, ONAC43, ONAC044, ONAC44, OsNAC19, NAC19, SNAC1/ONAC002, OsSNAC1, OsNAC9, OsNAC1
53142	0	Shen J., Su Y., Zhou C., Zhang F., Zhou H., Liu X., Wu D., Yin X., Xie Y., Yuan X.	A putative rice L-cysteine desulfhydrase encodes a true L-cysteine synthase that regulates plant cadmium tolerance	Plant Growth Regul.	89	217-226	2019	LCD2	OsLCD2, OsCS1, CS1
53143	0	Song S., Li L., Li Y., Wang T., Fu X.	Overexpression of gene OsSUI1 affects floral organ development in rice (Oryza sativa L.)	Molecular Breeding	38		2017	RR4,RR2,SUI1,RR6,RR8,RR7,RR1	rr4, OsRR4, Rra3, OsRRA3,rr2, Osrr2, OsRR2, Rra10, OsRRA10,UNP1, OsSUI1,OsRR6, rr6, Rra6, OsRRA6,rr8, OsRR8, Rra13, OsRR15, RR15, OsRRA13,rr7, OsRR7, Rra5, OsRRA5,rr1, OsRR1, Rra9, OsRRA9
53144	0	Yachun Y., Juan L., Hao L., Zuntao X., Ruiying Q., Wenge W., Pengcheng W., Yong D., Jianbo Y.	SDF5 Encoding P450 Protein Is Required for Internode Elongation in Rice	Rice Science	28(4)	313-316	2021	SDF5,D18,SD1,D35,KAO	OsCYP51H6, CYP51H6, P-450 51H6,d18-h  (d18-I, d18h), dwf15, d25, d18, d18-k, d18-AD, d18-dy, OsGA3ox2, ga3ox2, OsGA3OX2, GA3OX2, OsGA3ox-2, GA3ox-2, GA3ox1,sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2, OsPHQ1, OsPHq1, PHq1,d35, d35(t), dwf30, OsKOL2, KOL2, KO2, OsKO2, OSKO2, KO, CYP701A, CYP701A6, Os KO2, OsKOL2/CYP701A,OsKAO, kao, CYP88A5, OSKAO, Os KAO, RPE1, KO1
53145	0	Zhou Y., Wang D., Wu T., Yang Y., Liu C., Yan L., Tang D., Zhao X., Zhu Y., Lin J., Liu X.	LRRK1, a receptor-like cytoplasmic kinase, regulates leaf rolling through modulating bulliform cell development in rice	Molecular Breeding	38		2018	SRL1,RLCK199,LC2,ADL1,ACL-D,YAB1,OUL1,ND1,RL14	OsSRL1, CLD1/SRL1, CLD1, OsCLD1, OsSPARK9, SPARK9,OsRLCK199, LRRK1, OsLRRK1,OsLC2, OsVIL2, VIL2, OsVIL3,OsADL1,OsZHD1, ZHD1, OsACL-D, ZHD_G6, OsZHD_G6,OsYAB1, FIL1, osFIL1,ROC5, Roc5(t), Roc5, GL2-5, OsROC5, CLF1, OsCLF1, OsOUL1, OsHDZ7, OsHDZIP7, HDZ7, HDZIP7,CSLD4, OsCSLD4, OsCD1, CD1, DNL3, OsDNL3, NRL1, OsNRL1, SPO1, OsSPO1, SPO1/OsCSLD4,2-ODD24, Os2-ODD24, 2ODD24, Os2ODD24, OsRL14
53146	0	Liu S., Zhong J., Ling S., Liu Y., Xu Y., Yao J.	OsAPT1 a pollen Preferentially Expressed Gene Is Essential for pollen Tube Germination and Elongation in Rice	Plant Molecular Biology Reporter	39	87-97	2021	APT1,FH6,ADF6,GEM1,SUT1,RUPO,IMPBETA1,VAMP71112,AGP	OsSTA99, OsAPT1,OsFH6,OsADF6,OsGEM1,OsSUT1, OsSUT2,OsRLCK193, RLCK193, OsCrRLK1L13, CrRLK1L13, OsMRLK40, MRLK40, FLR9, OsFLR9,OsImpbeta1, OsImp beta 1,OsVAMP7112,OsAGP, OSIAGP, OSJAGP
53147	0	Li M., Guo L., Guo C., Wang L., Chen L.	Over-expression of a DUF1644 protein gene, SIDP361, enhances tolerance to salt stress in transgenic rice	Journal of Plant Biology	59	62-73	2016	SIDP361	OsSIDP361
53148	0	Huang S., Xin S., Xie G., Han J., Liu Z., Wang B., Zhang S., Wu Q., Cheng X.	Mutagenesis reveals that the rice OsMPT3 gene is an important osmotic regulatory factor	The Crop Journal	8(3)	465-479	2020	GSTU45,PRODH,_,_,_,ALDH18B2,_,POX22.3,PT17,_,PK6,FLO19,PT18,_,_	OsGSTU45,OsProDH, OsPDH, PDH,,,ptPDC-E2, OsptPDC-E2,P5CS2, OsP5CS2, OsALDH18B2 ,,POX22.3, OSPER, OsPOX, POX, Pir3, prx111, POX22, OsPOX1, POX1, OsPOX22.3, OsPR9, PR9,OsPT17, OsMPT3;1, MPT3;1,,OsPK6,ptPDC-E1-alpha1, OsptPDC-E1-alpha1, PDH-E1alpha, OsPDH-E1alpha,OsPT18, OsMPT3;2, MPT3;2,,
53149	0	Moon H., Young-Ah Kim, Shin R., Chang-Jin Park	Nucleus-Encoded Thylakoid Protein, OsY3IP1, Confers Enhanced Tolerance to Saline and Alkaline Stresses in Rice	Rice Science	29(3)	225-236	2022	CEST	OsCEST, OsY3IP1, Y3IP1
53150	0	Yang X., Nong B., Chen C., Wang J., Xia X., Zhang Z., Wei Y., Zeng Y., Feng R., Wu Y., Guo H., Yan H., Liang Y., Liang S., Yan Y., Li D., Deng G.	OsNPF3.1, a member of the NRT1/PTR family, increases nitrogen use efficiency and biomass production in rice	The Crop Journal	11(1)	108-118	2023	NPF3.1	PTR, OsNPF3.1
53151	0	Zhang L., Qi Y., Wu M., Zhao L., Zhao Z., Lei C., Hao Y., Yu X., Sun Y., Zhang X., Guo X., Ren Y., Wan J.	Mitochondrion-targeted PENTATRICOPEPTIDE REPEAT5 is required for cis-splicing of nad4 intron 3 and endosperm development in rice	The Crop Journal	9(2)	282-296	2021	DEK43,AOX1B,NAD4,AOX1C,AOX1A	OsDEK43, PPR5, OsPPR5,AOX1b, OsAOX1b,nad4, nadIV,OsAOX1c,Ao1-1, AOX1a, OsAOX1a, AOX 1a
53152	37279861	Ya Ma L., Lu Y., Cheng J., Wan Q., Ge J., Wang Y., Li Y., Feng F., Li M., Yu X.	Functional characterization of rice (Oryza sativa) thioredoxins for detoxification and degradation of atrazine.	Gene	877	147540	2023		
53153	36976907	Oliveira-Garcia E., Tamang T.M., Park J., Dalby M., Martin-Urdiroz M., Rodriguez Herrero C., Vu A.H., Park S., Talbot N.J., Valent B.	Clathrin-mediated endocytosis facilitates the internalization of Magnaporthe oryzae effectors into rice cells.	Plant Cell	35(7)	2527-2551	2023	AP2ALPHA,CLC1,CHC1,FLOT1	OsAP2alpha,OsCLC1,OsCHC1,OsFLOT1
53154	37279583	Cao S., Chen K., Lu K., Chen S., Zhang X., Shen C., Zhu S., Niu Y., Fan L., Chen Z.J., Xu J., Song Q.	Asymmetric variation in DNA methylation during domestication and de-domestication of rice.	Plant Cell			2023		
53155	37345946	Doll N.M.	From the archives: Boosting rice immunity, phosophoglucose isomerases influencing seed yield, and regulation of mRNA splicing.	Plant Cell			2023		
53156	37352123	Chen H., Zhang S., Li R., Peng G., Chen W., Rautengarten C., Liu M., Zhu L., Xiao Y., Song F., Ni J., Huang J., Wu A., Liu Z., Zhuang C., Heazlewood J.L., Xie Y., Chu Z., Zhou H.	BOTRYOID pollen 1 regulates ROS-triggered PCD and pollen wall development by controlling UDP-sugar homeostasis in rice.	Plant Cell			2023		
53157	37352121	Molla K.A.	Molecular switch to regulate salt-tolerance in rice.	Plant Cell			2023		
53158	37336274	Ong S.N., Tan B.C., Hanada K., Teo C.H.	Unearth of small open reading frames (sORFs) in drought stress transcriptome of Oryza sativa subsp. indica.	Gene	878	147579	2023		
53159	37316670	Guo J., Wang H., Guan W., Guo Q., Wang J., Yang J., Peng Y., Shan J., Gao M., Shi S., Shangguan X., Liu B., Jing S., Zhang J., Xu C., Huang J., Rao W., Zheng X., Wu D., Zhou C., Du B., Chen R., Zhu L., Zhu Y., Walling L.L., Zhang Q., He G.	A tripartite rheostat controls self-regulated host&#xa0;plant resistance to insects.	Nature	618(7966)	799-807	2023	NH1,_,RLCK185,ICS1,PR1B,NBR1,ATG8,WRKY72,BPH14,PR10A,_,ATG8C,ATG8B	OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2, DLN5, OsDLN5,  OsBTBA1, BTBA1,OsPR1, OsPR1a, PR1a, PR1, OsPR1b, PR1b,OsRLCK185,OsICS1, OsICS, ICS,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1, OsPR1a, PR1a,OsNBR1,Atg8, OsAtg8, APG8, OsATG8a, Atg8a,OsWRKY72, WRKY-72,Bph14 (Qbp1), Bph14, Qbp1, qBPH-3,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsPR5, PR5,OsATG8c,OsATG8b, Atg8b
53160	37325884	Liu C., Lin J.Z., Wang Y., Tian Y., Zheng H.P., Zhou Z.K., Zhou Y.B., Tang X.D., Zhao X.H., Wu T., Xu S.L., Tang D.Y., Zuo Z.C., He H., Bai L.Y., Yang Y.Z., Liu X.M.	The Protein Phosphatase PC1 Dephosphorylates and Deactivates CatC to Negatively Regulate H2O2 Homeostasis and salt tolerance in Rice.	Plant Cell			2023	PC1	OsPC1
53161	37316672	Sha G., Sun P., Kong X., Han X., Sun Q., Fouillen L., Zhao J., Li Y., Yang L., Wang Y., Gong Q., Zhou Y., Zhou W., Jain R., Gao J., Huang R., Chen X., Zheng L., Zhang W., Qin Z., Zhou Q., Zeng Q., Xie K., Xu J., Chiu T.Y., Guo L., Mortimer J.C., Boutt&#xe9; Y., Li Q., Kang Z., Ronald P.C., Li G.	Genome editing of a rice CDP-DAG synthase confers multipathogen resistance.	Nature	618(7967)	1017-1023	2023	RBL1,PAH2	OsRBL1,OsPAH2
53162	37316595		Rice gene tamed using genome editing.	Nature			2023		
53163	37349684	Ma X., Zhu M., Liu W., Li J., Liao Y., Liu D., Jin M., Fu C., Wang F.	Bulk segregant analysis coupled with transcriptomics and metabolomics revealed key regulators of bacterial leaf blight resistance in rice.	BMC Plant Biol.	23(1)	332	2023	DCL2A	OsDCL2a, OsDCL2, DCL2
53164	37342139	Lee C.M., Park H.S., Baek M.K., Jeong O.Y., Seo J., Kim S.M.	QTL mapping and improvement of pre-harvest sprouting resistance using <i>japonica</i> weedy rice.	Front Plant Sci	14	1194058	2023	_	
53165	37353931	Wu J., Yang S., Chen N., Jiang Q., Huang L., Qi J., Xu G., Shen L., Yu H., Fan X., Gan Y.	Nuclear translocation of OsMADS25 facilitated by OsNAR2.1 in response to nitrate signal promotes root growth by regulating the expression of OsMADS27 and OsARF7 in rice.	Plant Commun		100642	2023		
53166	37390996	Shi Y., Jiang W., Li M., Jiang N., Huang Y., Wang M., Du Z., Chen J., Li J., Wu L., Zhong M., Yang J., Huang J.	Metallochaperone protein OsHIPP17 regulates the absorption and translocation of cadmium in rice (Oryza sativa L.).	Int. J. Biol. Macromol.	245	125607	2023		
53167	37366020	Li J., Kong D., Song T., Hu Z., Li Q., Xiao B., Kessler F., Zhang Z., Xie G.	OsFBN7-OsKAS I module promotes formation of plastoglobules clusters in rice chloroplasts.	New Phytol.			2023	FBN7,KAS-IA	OsFBN7,OsKAS Ia, KAS Ia, OsKAS-IA, OsKASI-2, KASI-2
53168	37446969	Wan J., Zhang J., Zan X., Zhu J., Chen H., Li X., Zhou Z., Gao X., Chen R., Huang Z., Xu Z., Li L.	Overexpression of Rice Histone H1 Gene Reduces Tolerance to Cold and Heat Stress.	Plants (Basel)	12(13)		2023	DREB1C,H1,HSP101,TPP1,DREB1B,HSP26,DREB1A,HSP24.1	OsDREB1C, CBF1, ERF26, OsERF026, OsERF#026, OsERF26, AP2/EREBP#098, AP2/EREBP98, OsCBF2, CBF2,OsH1, OsHis1.1, His1.1,Oshsp101, OsHSP101, ClpB-cyt, OsClpB-cyt, ClpB-C/Hsp100, OsClpB-C,OsTPP1, OsTPS, TPP,OsDREB1B, ERF31, OsERF031, OsERF#031, OsERF31, AP2/EREBP#169, AP2/EREBP169, OsDREB1b, OsDREB1C, OsCBF1, CBF1,OsHSP26, Oshsp26, OsHSP26.7, HSP26.7,OsDREB1A, Os DREB1A, CBF3, OsCBF3, OsDREB1A/OsCBF3, ERF24, OsERF24, OsERF024, OsERF#024, AP2/EREBP#114, AP2/EREBP114, OsDREBL,OsHsp24.1, OsHSP24.1
53169	37384619	Wang K., Li M., Zhang B., Chang Y., An S., Zhao W.	Sugar starvation activates the OsSnRK1a-OsbHLH111/OsSGI1-OsTPP7 module to mediate growth inhibition of rice.	Plant Biotechnol. J.			2023	OSK1,SGI1,TPP7	osk1, SnRK1A, OsSnRK1A, OsSNRK1a, SnRK1A/OSK1, SnRK1a, OsSnRK1.2, SnRK1.2, OsSnRK1alphaA, SnRK1alphaA,OsbHLH111, bHLH111, HBP1, OsHBP1, OsSGI1,OsTPP7
53170	37366497	Kumar A., Singh S., Mishra A.	Genome-wide identification and analyses of the AHL gene family in rice (<i>Oryza sativa</i>).	3 Biotech	13(7)	248	2023		
53171	37404536	Gao J., Ge S., Wang H., Fang Y., Sun L., He T., Cheng X., Wang D., Zhou X., Cai H., Li C., Liu Y., E Y., Meng J., Chen W.	Biochar-extracted liquor stimulates nitrogen related gene expression on improving nitrogen utilization in rice seedling.	Front Plant Sci	14	1131937	2023	NLP4,SPX4,GS2,PSR1,NLP3,GLT2,GLN1;1,AMT1;2,_,AMT1;1,NPF6.3,NPF6.5	OsNLP4, NLP4.1, NLP4.2,OsSPX4, Os-SPX4,OsGS2, GLN2, OsGLN2, RGS31, OsRGS31,PSR1, NiR, OsNiR, OsNIR1, NIR1, FD-NiR, OsNiR2,OsNLP3,OsGLT2, OsNADH-GOGAT2, NADH-GOGAT2, OsGOGAT2, GOGAT2, OsGLU2, GLU2,OsGLN1;1, GS1, RGS28, OsGS1;1, GS1;1, OsGS, GS1, OsGS1, GLN1-1, OsGS1-1, GS1-1, GS1.1, OsGS1.1,OsAMT1;2, AMT1-2, Osamt1-3, "OsAMT1,3", OsAMT1;3, OsAMT1.3, OsAMT1.2, AMT1.2,OsNIA1, OsNia1, NIA1, Nia1, OsNR, NR, OsNR2, NR2, NIA2,OsAMT1;1, OsAMT1:1, OsAMT1, AMT1-1, AMT1, OsAMT1p, OsAMT1-1, Osamt1-1, "OsAMT1,1", OsAMT1.1, AMT1.1, FCO12,OsNRT1.1A, NRT1.1A, OsNRT1.1A/ OsNPF6.3, OsNPF6.3,OsNRT1.1B, NRT1.1B, OsNPF6.5
53172	37300540	Bhatnagar A., Burman N., Sharma E., Tyagi A., Khurana P., Khurana J.P.	Two splice forms of OsbZIP1, a homolog of AtHY5, function to regulate skoto- and photo-morphogenesis in rice.	Plant Physiol.			2023		
53173	37375951	Lu S., Ye J., Li H., He F., Qi Y., Wang T., Wang W., Zheng L.	The Splicing Factor OsSCL26 Regulates Phosphorus Homeostasis in Rice.	Plants (Basel)	12(12)		2023	SPX2,SCL26,PT14,PT1,SPX-MFS2 ,SPX-MFS1,PT22,RFPHC-1	OsSPX2,Os-SCL26, OsSCL26,OsPT14, OsPHT2;1, PHT2;1,OsPT1, PHT1-1, OsPht1;1, Pht1;1, OsPHT1;1, PHT1;1,OsSPX-MFS2,OsSPX-MFS1,OsPT22, OsPHT4;3, PHT4;3,OsRFPHC-1, OsNLA2, NLA2, OsNLA2.1, OsNLA2.2, OsRING348, RING348
53174	37344696	Guan L., Xia D., Hu N., Zhang H., Wu H., Jiang Q., Li X., Sun Y., Wang Y., Wang Z.	OsFAR1 is involved in primary fatty alcohol biosynthesis and promotes drought tolerance in rice.	Planta	258(2)	24	2023	FAR1	OsFAR1
53175	37142417	Sugimura Y., Fukayama H., Michiyama H., Hirano T.	The relationship between &#x3b2;-amylase and the degradation of starch temporarily stored in rice leaf blades.	Biosci. Biotechnol. Biochem.	87(7)	736-741	2023		
53176	37341827	Mondal K., Tiwari M., Singh R.K., Prasad M., Dey N.	Feeding the future: role of OsAUX5 in enhancing rice nutritional value.	Plant Cell Rep.	42(8)	1391-1393	2023		
53177	37314350	Zhou T., He Y., Han X., Sun Q., Xuan Y.H.	&#x3b2;-Glucanase Family Genes Promote Resistance to Sheath Blight in Rice by Inhibiting the Permeability of Plasmodesmata.	J. Agric. Food Chem.	71(25)	9667-9676	2023	GNS9,BGL6,BGL8,BGL2,BGL14X,BGL14,GNS11,BGL7	Gns9, OsGns9, OsPR8a, PR8a, OsBGL12, BGL12, BG12, OsBG12,OsBGL6, BG6, OsBG6,OsBGL8,OsBGL2,OsBGL14X,OsBGL14,Gns11, OsGns11, OsBGL3, BGL3,OsBGL7
53178	37323119	Liu X., Yu Y., Yao W., Yin Z., Wang Y., Huang Z., Zhou J.Q., Liu J., Lu X., Wang F., Zhang G., Chen G., Xiao Y., Deng H., Tang W.	CRISPR/Cas9-mediated simultaneous mutation of three salicylic acid 5-hydroxylase (OsS5H) genes confers broad-spectrum disease resistance in rice.	Plant Biotechnol. J.			2023		
53179	37214799	Ferrero-Serrano &#xc1;., Chakravorty D., Kirven K.J., Assmann S.M.	Oryza CLIMtools: An Online Portal for Investigating Genome-Environment Associations in Rice.	bioRxiv			2023	GGC2,MADS50,D1,DEP1,HD2,LK3	OsGGC2,OsMADS50, AGL20, SOC1, OsSOC1, RMADS208, OsSOC1/ OsMADS50/DTH3, DTH3, OsDTH3,d1, GPA1, GA1, OsGA1, RGA1, dwf1, XA7, RGA, D1/RGA1, D89, TGW5, OsTGW5, SRG5, OsSRG5,OsDEP1, EP, qPE9-1, DN1, DEP1/DN1/qPE9-1, qNGR9, qDEP1, RGG4/DEP1/DN1/qPE9-1/OsGGC3, RGG4, OsDN1, OsGGC3, GGC3,Hd2(t), Hd2, qHD2(t), OsPRR37, Os-PRR37, PRR37, Prr4, OsPRR4, DTH7, Os DTH7, OsCCT28, CCT28, Ghd7.1, PRR37/Hd2, EH7-2, EH7-2/Hd2, Hd2/PRR37, PRR37-1a, PRR37-1b, PRR37-1c, PRR37-2a, PRR37- 2, HD7.2,lk3(t), lk3(t)*, SG3, GS3, SG3-GS3, OsGW3, OsGS3, RGG3/GS3/Mi/OsGGC1, RGG3, Mi, OsGGC1, GGC1, OsSYL3, SYL3, TT2, OsTT2
53180	37291104	Cui J., Nishide N., Mashiguchi K., Kuroha K., Miya M., Sugimoto K., Itoh J.I., Yamaguchi S., Izawa T.	Fertilization controls tiller numbers via transcriptional regulation of a MAX1-like gene in rice cultivation.	Nat Commun	14(1)	3191	2023	MAX1B,FTL6,TIFY11D,TIFY11B,SLB2,RAU4,LOGL3,PIN9,PIN5A,PP2C9,TIFY10C,MFT1,LOG1,TIFY10B,MAX1D,SLB1,RR2,CKX4,LOGL5,CKX3,CKX9	OsMAX1b, MAX1b, Os5100/CYP711A6, Os5100, CYP711A6, Os/CYP711A6,FT-L 6, OsFTL6, FT-L6,OsTIFY11d, OsJAZ1, JAZ1, OsJAZ 12, OsJAZ12, JAZ12,OsJAZ4, JAZ4, OsJAZ 10, OsJAZ10, JAZ10, OsTIFY11b,CYP711A1, OsCYP711A1, Os1400/CYP711A3, Os1400, CYP711A3, OsCYP711A3, OsMAX1-1400, MAX1-1400,OsLAX4, OsRAU4, OsAUX4, LAX4, AUX4,OsLOGL3,OsPIN9,OsPIN5a, OsPIN6,OsPP15, PP15, OsPP2C09, PP2C09, OsPP2C9, OsPP2C3,OsJAZ7, JAZ7, OsJAZ 8, OsJAZ8, Os-JAZ8, JAZ8, OsTIFY10c, OsTIFY10c/OsJAZ8,OsMFT1,OsLOG1, LOG, Log, log, OsLOG,OsJAZ6, OsJAZ 7, OsJAZ7, OsTIFY10B, JAZ6, JAZ7,OsMAX1D, Os1900/CYP711A5, Os1900, CYP711A5, OsCYP711A5,OsSLB1, Os900/CYP711A2, Os900, CYP711A2, OsCYP711A2, OsCO, CO,rr2, Osrr2, OsRR2, Rra10, OsRRA10,OsCKX4, ckx4, OsSCRM, OsSCRM2, SCRM, SCRM2,OsLOGL5,OsCKX3, ckx3,OsCKX9
53181	37316787	Xu K., Lou Q., Wang D., Li T., Chen S., Li T., Luo L., Chen L.	Overexpression of a novel small auxin-up RNA gene, OsSAUR11, enhances rice deep rootedness.	BMC Plant Biol.	23(1)	319	2023	YUCCA5,PP2C25,SAUR11,BZIP62,RAU1,PIN5B,LRA1	OsYUCCA5, OsYUC5, YUC5,OsPP2C25, OsPP36, PP36,OsSAUR11,OsbZIP62, OsABF8, OsEEL, EEL,OsLAX1, OsRAU1, OsAUX1, LAX1, AUX1,PIN5C, OsPIN5c, OsPIN5b, PIN4,OsPIN2, PIN2, OsLRA1, WAR1, OsWAR1
53182	37022148	Lu K., Guo Z., Di S., Lu Y., Muhammad I.A.R., Rong C., Ding Y., Li W., Ding C.	OsMFT1 Inhibits Seed Germination by Modulating Abscisic Acid Signaling and Gibberellin Biosynthesis under Salt Stress in Rice.	Plant Cell Physiol.	64(6)	674-685	2023		
53183	37376011	Rahman M.A., Ullah H.	Receptor for Activated C Kinase1B (RACK1B) Delays Salinity-Induced Senescence in Rice Leaves by Regulating Chlorophyll Degradation.	Plants (Basel)	12(12)		2023	SGR,RCCR1,NYC1,RACK1B,YGL10,TIL1,STN7	sgr(t), sgr, OsSGR, OsSgr, SGR1, OsSGR1,OsRCCR1, OsRCCR, RCCR,nyc1, OsNYC1,OsWD40-122, WD40-122, OsRACK1B,CAO, OsCAO, CAO1, OsCAO1, Oslls1, Lls1, DVR, PGL,NAC2, OsNAC2, ONAC004, ONAC4, ONAC034, ONAC34, ONAC058, ONAC58, OMTN2, Ostil1, OsNAC2/ONAC004, OsORE1.2, DLN113, OsDLN113,OsSTN7
53184	37340958	Guo X., Chen Y., Hu Y., Feng F., Zhu X., Sun H., Li J., Zhao Q., Sun H.	OsMADS5 interacts with OsSPL14/17 to inhibit rice root elongation by restricting cell proliferation of root meristem under ammonium supply.	Plant J.			2023		
53185	37321989	Yu J., Zhu C., Xuan W., An H., Tian Y., Wang B., Chi W., Chen G., Ge Y., Li J., Dai Z., Liu Y., Sun Z., Xu D., Wang C., Wan J.	Genome-wide association studies identify OsWRKY53 as a key regulator of salt tolerance in rice.	Nat Commun	14(1)	3550	2023	SKC1,MKK10-2,WRKY53,DSG1	OsHKT8, HKT8, Os-HKT1;5, OsHKT1;5, HKT1;5, SKC1, qSKC-1(t), OsSKC1,OsMKK10-2, MKK10-2D, OsMPKK10-2, MPKK10-2, OsMKK10.2, MKK10.2, OsMPKK10-2D, MPKK10-2D, MPKK10.2, OsMAPKK10-2, MAPKK10-2, OsMEK3. MEK3,OsWRKY53, WRKY-53,OsMAPK6, MAPK6, OsMPK6, OsSIPK, SIPK, OsMAPK1, MAPK1, MPK1, OsMPK1, MPK6, OsDSG1
53186	37372105	Li H., Xu L., Wu W., Peng W., Lou Y., Lu J.	Infestation by the Piercing-Sucking Herbivore <i>Nilaparvata lugens</i> Systemically Triggers JA- and SA-Dependent Defense Responses in Rice.	Biology (Basel)	12(6)		2023	PR1B,JIOSPR10,PR10A,SH11,WRKY26,_,PR4,CHT2,TIFY10C,PAL1,PR1A	OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1, OsPR1a, PR1a,JIOsPR10, OsPR10, PR10, OsJiPR10, JiPR10, OsPR10c, PR10c,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsJAmyb, JAmyb, OsJAMyb, OsMYB21, MYB21, Os2R_MYB91, 2R_MYB91, OgSH11, OsSH11,OsWRKY26, OsWRKY59, DLN19, OsDLN19,Lox2:Os:1, OsLOX9, LOX9, OsLOX8, LOX8, OsLOX2, LOX2, OsRLL, OsHI-LOX, HI-LOX, RLL2 LOX, RLL2, Lox2osPil, OsLOX2;1, LOX2;1, OsLOX1, OsLOX7, LOX7,OsPR4, OsPR4a, PR4a, OsPR-4,Cht2*, Cht2, RC7, OsChia1b, Chia1b, CHIT17, OsCHIT17,OsJAZ7, JAZ7, OsJAZ 8, OsJAZ8, Os-JAZ8, JAZ8, OsTIFY10c, OsTIFY10c/OsJAZ8,OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6,OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1, OsPR1b, PR1alpha, OsPR1alpha
53187	37384532	Chen Y., Qi H., Yang L., Xu L., Wang J., Guo J., Zhang L., Tan Y., Pan R., Shu Q., Qian Q., Song S.	The OsbHLH002/OsICE1-OSH1 module orchestrates secondary cell wall formation in rice.	Cell Rep	42(7)	112702	2023		
53188	37355232	Shalmani A., Ullah U., Tai L., Zhang R., Jing X.Q., Muhammad I., Bhanbhro N., Liu W.T., Li W.Q., Chen K.M.	OsBBX19-OsBTB97/OsBBX11 module regulates spikelet development and yield production in rice.	Plant Sci.	334	111779	2023	BTB97	OsBTB97
53189	37409294	Xian L., Tian J., Long Y., Ma H., Tian M., Liu X., Yin G., Wang L.	Metabolomics and transcriptomics analyses provide new insights into the nutritional quality during the endosperm development of different ploidy rice.	Front Plant Sci	14	1210134	2023	LC4,AGD2	OsLC4,OsAGD2, OsLC3, LC3
53190	37349549	Li W., Yan J., Zhang Y., Zhang F., Guan Z., Yao Y., Chang Y., Tu H., Li X., Wang H., Xiong H., Lai X., Yin P., Xiong L.	serine protease NAL1 exerts pleiotropic functions through degradation of TOPLESS-related corepressor in rice.	Nat Plants	9(7)	1130-1142	2023		
53191	37372942	Li Y., Wang W., Hu C., Yang S., Ma C., Wu J., Wang Y., Xu Z., Li L., Huang Z., Zhu J., Jia X., Ye X., Yang Z., Sun Y., Liu H., Chen R.	Ectopic Expression of a Maize Gene <i>ZmDUF1645</i> in Rice Increases Grain Length and Yield, but Reduces Drought Stress Tolerance.	Int J Mol Sci	24(12)		2023	RR4,RR1,GIF1,_,LK3,GW2,P5CS,IPT9,GS5,LOG1	rr4, OsRR4, Rra3, OsRRA3,rr1, OsRR1, Rra9, OsRRA9,gif1, CIN2, OsCIN2, OsGIF1, WB1, OsWB1, GIF1/OsCIN2,MAPK, MAPK6,lk3(t), lk3(t)*, SG3, GS3, SG3-GS3, OsGW3, OsGS3, RGG3/GS3/Mi/OsGGC1, RGG3, Mi, OsGGC1, GGC1, OsSYL3, SYL3, TT2, OsTT2,OsGW2, OsRING429, RING429, GNL44, OsGNL44,OsP5CS, P5CS1, OsP5CS1, OsALDH18B1, ALDH18B1, OsP5CS-1, P5CS-1,OsIPT9, OsIPT5, IPT5,OsSCP26, SCP26, OsGS5,OsLOG1, LOG, Log, log, OsLOG
53192	37373450	Niu F., Liu M., Dong S., Dong X., Wang Y., Cheng C., Chu H., Hu Z., Ma F., Yan P., Lan D., Zhang J., Zhou J., Sun B., Zhang A., Hu J., Zhang X., He S., Cui J., Yuan X., Yang J., Cao L., Luo X.	RNA-Seq Transcriptome Analysis and Evolution of <i>OsEBS</i>, a Gene Involved in Enhanced Spikelet Number per Panicle in Rice.	Int J Mol Sci	24(12)		2023	EBS	OsEBS
53193	37445999	Song J., Ga E., Park S., Lee H., Yoon I.S., Lee S.B., Lee J.Y., Kim B.G.	PROTEIN PHOSPHATASE 2C08, a Negative Regulator of Abscisic Acid Signaling, Promotes Internode Elongation in Rice.	Int J Mol Sci	24(13)		2023	KAO,SBI,ABI1,PRL5,PP2C8,SLR1	OsKAO, kao, CYP88A5, OSKAO, Os KAO, RPE1, KO1,GA2OX4, OsGA2ox4, ga2ox 4, OsGA2ox-4, OsSBI,OsPP2C51, PP2C51, OsPP79, PP79, OsABI1,OsGA20ox4, ga20ox4, GA20ox2, Prl5, Prl5/GA20ox4, OsPrl5,OsPP2C08, PP2C08, OsPP2C8, OsPP12,slr1-1, slr1, slr, GAI, OsGAI, OsSLR1, Os SLR1, OsRGA1, OsGRAS-18, OsGRAS-18, GRAS-18, GRAS18, SLR-1
53194	36780918	Laflamme B.	Reeling in countless effectors (RICE): time-course transcriptomics of rice blast disease reveal an expanded effector repertoire for Magnaporthe oryzae.	Plant Cell	35(5)	1290-1291	2023		
53195	37009647	Beretta V.M., Franchini E., Ud Din I., Lacchini E., Van den Broeck L., Sozzani R., Orozco-Arroyo G., Caporali E., Adam H., Jouannic S., Gregis V., Kater M.M.	The ALOG family members OsG1L1 and OsG1L2 regulate inflorescence branching in rice.	Plant J.	115(2)	351-368	2023	G1L4,ESP,GATA7,PAP2,HOX14,G1L2,G1L5,G1L1,ERF112,RCN4,IAA14,MADS37,RCN1,RR3,NAC120,FC1	OsG1L4,OsESP,OsGATA7,MADS34, OsMADS34, RMADS212/RMADS217/RMADS221, OsPAP2/MADS34, MADS34/PAP2, PAP2/OsMADS34, OsMADS34/PAP2, OsMADS19,Oshox14, OsHox14,OsG1L2,OsG1L5, TAW1, OsTAW1,OsG1L1,OsERF#112, OsERF112, AP2/EREBP#009, AP2/EREBP9, SKL3, OsSKL3, SKL3-1, SKL3-2, SKL3-3, SKL3-1C9285, SKL3-2Nipponbare, SKL3-3C9285,Rcn4, OsRCN4,OsIAA14, AUX/IAA14, OsAUX/IAA14 ,OsMADS37, DLN217, OsDLN217,Rcn1, FDR2, Fdr2, RCN1/FDR2, OsRCN1,OSRR3, OsRR3, rr3, Rra7, OsRRA7,ONAC120,fc1, OsTB1, tb1, OsTB1/FC1, Os TB1, TB1, OsFC1, MP3, OsMP3
53196	36946067	Kettenburg A.T., Lopez M.A., Yogendra K., Prior M.J., Rose T., Bimson S., Heuer S., Roy S.J., Bailey-Serres J.	PHOSPHORUS-STARVATION TOLERANCE 1 (OsPSTOL1) is prevalent in upland rice and enhances root growth and hastens low phosphate signaling in wheat.	Plant Cell Environ.	46(7)	2187-2205	2023	PSTOL1	Pstol1, OsPSTOL1, OsPSTOL, PSTOL, Pstol1/OsPupK46-2, OsPupK46-2, Pup1, PHO
53197	37175721	Feng K., Li J., Yang Y., Li Z., Wu W.	Cadmium Absorption in Various Genotypes of Rice under Cadmium Stress.	Int J Mol Sci	24(9)		2023	CDT1,LCD1,MTP1,IRT1,HMA9,PCR1,GCC7	OsCDT1, OsCCX2, CCX2, OsNCX8, NCX8,NRAMP5, OsNRAMP5, OsNramp5, OsLCD1,OsMTP1,OsIRT1, ZIP10, OsZIP10, OsZIP12, ZIP12,OsHMA9 ,oshma9-1, oshma9-2, HMA9, OsHMP33, HMP33,OsFWL5, FWL5, OsPcr1, OsPCR1, OsFWL5/OsPCR1, OsFWL7, FWL7,HMA3, OsHMA3, OsHMA3a, OsHMA3n, osHMA3, OsHMP34, HMP34
53198	37039968	Yang S., Xu N., Chen N., Qi J., Salam A., Wu J., Liu Y., Huang L., Liu B., Gan Y.	OsUGE1 is directly targeted by OsGRF6 to regulate root hair length in rice.	Theor. Appl. Genet.	136(5)	108	2023		
53199	37047628	Zou T., Wang X., Sun T., Rong H., Wu L., Deng J., Guo T., Wang H., Wang J., Huang M.	MYB Transcription Factor <i>OsC1PLSr</i> Involves the Regulation of Purple leaf sheath in Rice.	Int J Mol Sci	24(7)		2023	RD,F3H1,C,ANS,F3'H	Rd, DFR, OsDFR, OS-DFR, OsDFR1, DFR1, DFR-1,OsF3H-1, F3H-1, OsF3H1, OsF3H, F3H, OsF3H3, F3H3,C, Cp, OsC1, Os-C1, C1, OsMyb6, Myb6, OsPL6, PL6, OsGL1E, GL1E, Os2R_MYB63, 2R_MYB63, OsC1PLSr, C1PLSr,ANS, OsANS1, ANS1, LDOX, LDOX1, OsLDOX, OsLDOX1,OsF3'H, OsCYP75B3, CYP75B3, OsF3'H10, F3'H10, OsCYP71P3, CYP71P3
53200	37187771	Dey A., Bhattacharjee S.	Imbibitional redox and hormonal priming revealed regulation of oxidative window as a key factor for progression of germination of indica rice cultivars.	Physiol Mol Biol Plants	29(4)	471-493	2023		
53201	37010326	Guo N., Qu H., Zhi Y., Zhang Y., Cheng S., Chu J., Zhang Z., Xu G.	Knockout of amino acid transporter gene Oslht1 accelerates leaf senescence and enhances resistance to rice blast fungus.	J. Exp. Bot.			2023		
53202	37053298	Xu T., Fu D., Xiong X., Zhu J., Feng Z., Liu X., Wu C.	OsbHLH067, OsbHLH068, and OsbHLH069 redundantly regulate inflorescence axillary meristem formation in rice.	PLoS Genet.	19(4)	e1010698	2023	PLA1,NL1,NSP1,LAX1,FC1,WFP,BHLH67,BHLH68,RCN4,OSH1	pla1, OsPLA1, plt1, CYP78A11,nl1, OsGATA15, GATA15, OsNL1,OsbHLH069, bHLH069, bHLH69, OsbHLH69, OsNSP1,lax, lax(lx), lx, OsbHLH123, bHLH123, OsLAX1, BOS1, OsBOS1,fc1, OsTB1, tb1, OsTB1/FC1, Os TB1, TB1, OsFC1, MP3, OsMP3,OsSPL14, SPL14, IPA1, WFP/IPA1, OsSPL14/WFP/IPA1, OsIPA1,  IPA1/OsSPL14,OsbHLH067, bHLH067, bHLH67, OsbHLH67,OsbHLH068, bHLH068, bHLH68, OsbHLH68,Rcn4, OsRCN4,OSKN1, Oskn1, OsKN1, OSH1/Oskn1, HB75
53203	37091382	Kawada K., Saito T., Onoda S., Inayama T., Takahashi I., Seto Y., Nomura T., Sasaki Y., Asami T., Yajima S., Ito S.	Synthesis of Carlactone Derivatives to Develop a Novel Inhibitor of Strigolactone Biosynthesis.	ACS Omega	8(15)	13855-13862	2023		
53204	37176922	Islam M.R., Chowdhury R., Roy A.S., Islam M.N., Mita M.M., Bashar S., Saha P., Rahat R.A., Hasan M., Akter M.A., Alam M.Z., Latif M.A.	Native <i>Trichoderma</i> Induced the Defense-Related Enzymes and Genes in Rice against <i>Xanthomonas oryzae</i> pv. <i>oryzae</i> (<i>Xoo</i>).	Plants (Basel)	12(9)		2023	PR1A,WRKY45,WRKY71,WRKY62,_,PR10A,ACS2	OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1, OsPR1b, PR1alpha, OsPR1alpha,OsWRKY45, OsWRKY45-1, OsWRKY45-2, WRKY45-1, WRKY45-2,OsWRKY71, WRKY-71,OsWRKY62, OsWRKY62.1, OsWRKY62.2, XB10, OsWRKY62-1, OsWRKY62-2,Lox2:Os:1, OsLOX9, LOX9, OsLOX8, LOX8, OsLOX2, LOX2, OsRLL, OsHI-LOX, HI-LOX, RLL2 LOX, RLL2, Lox2osPil, OsLOX2;1, LOX2;1, OsLOX1, OsLOX7, LOX7,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsACS2, Os-ACS2
53205	37047576	Song G., Son S., Nam S., Suh E.J., Lee S.I., Park S.R.	OsWRKY114 Is a Player in Rice Immunity against <i>Fusarium fujikuroi</i>.	Int J Mol Sci	24(7)		2023	TIFY11A,SD1,WRKY114,TIFY11F,GID1,GA3OX1,XTH17	OsJAZ3, JAZ3, OsJAZ 9, OsJAZ9, Os-JAZ9, JAZ9, OsTIFY11a, OsJAZ6, JAZ6,sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2, OsPHQ1, OsPHq1, PHq1,OsWRKY114,OsJAZ 14, OsJAZ14, JAZ14, OsTIFY11f,gid1, OsGID1, Thl, Os GID1,OsGA3ox1, GA3ox1, OsGA3OX1,OsXTH17, OsXTH8, XTH8
53206	36688592	Miyata K., Hosotani M., Akamatsu A., Takeda N., Jiang W., Sugiyama T., Takaoka R., Matsumoto K., Abe S., Shibuya N., Kaku H.	OsSYMRK Plays an Essential Role in AM Symbiosis in Rice (Oryza sativa).	Plant Cell Physiol.	64(4)	378-391	2023	KS4,SYMRK,KS8,CERK1	OsKS4, KS4, KSL4, OsKSL4, DTS2, OsDTS2, OsTPS16, TPS16, TPS8, OsTPS8,OsSYMRK,OsKS8, KS8, KSL8, OsKSL8, DTC2, OsDTC2, OsDTC2/OsKS8, OsTPS32, TPS17, OsTPS17, KSL11, OsKSL11,OsCERK1, OsLysM-RLK9, Os-CERK1, Os-LysM-RLK9, OsLysMRLK9, OsCERK1/OsLYK9, OsLYK9, LYK9
53207	37111940	Hasegawa K., Ichikawa A., Takeuchi H., Nakamura A., Iwai H.	Maintenance of Methyl-Esterified Pectin Level in pollen Mother-Cell Stages Is Required for Microspore Development.	Plants (Basel)	12(8)		2023	PME6,PME34	OsPME6, OsPME1,OsPME34
53208	37009643	Wang J., Lian L., Qi J., Fang Y., Nyporko A., Yu Q., Bai L., Pan L.	Metabolic resistance to acetolactate synthase inhibitors in Beckmannia syzigachne: identification of CYP81Q32 and its transcription regulation.	Plant J.	115(2)	317-334	2023	BEL	bel, bel-a(8077S), bel-b(=bsl, Norin8m), CYP81A6, OsCYP81A6, OsCYP81Q32, CYP81Q32, OsCYP71U8, CYP71U8
53209	37084146	Zhou Y., Zhang Z., Zhao X., Liu L., Tang Q., Fu J., Tang X., Yang R., Lin J., Liu X., Yang Y.	Receptor-Like Cytoplasmic Kinase STK Confers salt tolerance in Rice.	Rice (N Y)	16(1)	21	2023	ABAR1,RLCK284,GSTL1,SIK1,SAPK10,BGLU6,OSBZ8,GSTU13,GSTU15	OsABAR1,OsRLCK284, YK12, PTK16, OsPTK16, STK, OsSTK,OsGSTL1, GST1,OsSIK1, OsER2, ER2, OsERL, ERL,OsSAPK10, OsSnRK2.10, SnRK2.10,Os3bglu6, Os3BGlu6, 3BGlu6,OsBZ8, OsbZIP05, OsGBF1, GBF1, OsGBF1a, OsGBF1b,OsGSTU13,OsGSTU15
53210	37108797	Xu H., Chang Q., Huang L., Wei P., Song Y., Guo Z., Peng Y.L., Fan J.	An <i>Agrobacterium</i>-Mediated Transient Expression Method for Functional Assay of Genes Promoting Disease in Monocots.	Int J Mol Sci	24(8)		2023	AK1,NYC3,MRS2-9,NUDX8	OsAK1, OsAk2, Ak2,nyc3, OsNYC3, PPH,OsMRS2-9,OsNUDX8, OsNUDX21, NUDX21
53211	37024659	Zhou J., Liu G., Zhao Y., Zhang R., Tang X., Li L., Jia X., Guo Y., Wu Y., Han Y., Bao Y., He Y., Han Q., Yang H., Zheng X., Qi Y., Zhang T., Zhang Y.	An efficient CRISPR-Cas12a promoter editing system for crop improvement.	Nat Plants	9(4)	588-604	2023		
53212	37115335	Ullah U., Mao W., Abbas W., Alharthi B., Bhanbhro N., Xiong M., Gul N., Shalmani A.	OsMBTB32, a MATH-BTB domain-containing protein that interacts with OsCUL1s to regulate salt tolerance in rice.	Funct. Integr. Genomics	23(2)	139	2023		
53213	37232714	Rathnasamy S.A., Kambale R., Elangovan A., Mohanavel W., Shanmugavel P., Ramasamy G., Alagarsamy S., Marimuthu R., Rajagopalan V.R., Manickam S., Ramanathan V., Muthurajan R., Vellingiri G.	Altering Stomatal Density for Manipulating Transpiration and Photosynthetic Traits in Rice through CRISPR/Cas9 Mutagenesis.	Curr Issues Mol Biol	45(5)	3801-3814	2023	EPF1	OsEPF1, OsEPF2, EPF2
53214	36965127	Hu Z., Niu F., Yan P., Wang K., Zhang L., Yan Y., Zhu Y., Dong S., Ma F., Lan D., Liu S., Xin X., Wang Y., Yang J., Cao L., Wu S., Luo X.	The kinase OsSK41/OsGSK5 negatively regulates amylose content in rice endosperm by affecting the interaction between OsEBP89 and OsBP5.	J Integr Plant Biol	65(7)	1782-1793	2023	BP-5,WX1,TGW3,EBP-89	OsBP-5, OsBP5, BP5,wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx,GL3.3, OsSK41, SK41, OsGSK5, GSK5, qTGW3, OsTGW3, OsGSK5/OsSK41, OsSK41/OsGSK5, GL3.3/TGW3,OsEBP-89, ebp-89, OsERF#060, OsERF060, OsERF60, ERF60, AP2/EREBP#027, AP2/EREBP27, OsEBP89, DLN76, OsDLN76
53215	37085517	He Y., Sun S., Zhao J., Huang Z., Peng L., Huang C., Tang Z., Huang Q., Wang Z.	UDP-glucosyltransferase OsUGT75A promotes submergence tolerance during rice seed germination.	Nat Commun	14(1)	2296	2023	ABA8OX3,TIFY5,ABI5,UGT75F2,ABA8OX1,TIFY10C,TIFY10B,EG2,TIFY10A,VP1	OsABA8OX3, OsABA8ox3, CYP707A7, OsCYP707A7, OsAba-ox3, OsABA8ox3, OsABA8'ox3, ABA8'ox3, OsABAX3, ABAX3, OsABA8'OH3, ABA8'OH3,OsJAZ 2, OsJAZ2, JAZ2, OsTIFY5, OsSTA188, OsJAZ5, JAZ5,OsABI5, OsbZIP10, OsABF1, OREB1, OsABI5-1, OsABI5-2, OsOREB1, OREB1 ,OsIAGLU, IAGLU, OsUGT75F2, OsUGT75A, UGT75A,OsABA8OX1, CYP707A5, OsCYP707A5, ABA8ox1, OsABA8ox1, OsABA8'OH1, ABA8'OH1 ,OsJAZ7, JAZ7, OsJAZ 8, OsJAZ8, Os-JAZ8, JAZ8, OsTIFY10c, OsTIFY10c/OsJAZ8,OsJAZ6, OsJAZ 7, OsJAZ7, OsTIFY10B, JAZ6, JAZ7,OsTIFY3, OsJAZ10, OsJAZ 1, OsJAZ1, JAZ1, EG2/OsJAZ1, EG2, JAZ1/EG2,OsJAZ5, JAZ5, JAZ6, OsJAZ6, OsTIFY10A,Vp1* (OSVP1), OsVP1, OsVp1, Vp1, ABI3, OsABI3, OsLFL4, OsVp-1, OSVP1
53216	37027036	Wu F., Wang Z., Zhou W., Liu Y., Shi H., Gou X., Li H., Lin Y., Li C., Liu Y.	Genome-wide identification and characterization of circRNAs in wheat tiller.	Theor. Appl. Genet.	136(5)	102	2023		
53217	37175747	Liu Z., Li P., Yu L., Hu Y., Du A., Fu X., Wu C., Luo D., Hu B., Dong H., Jiang H., Ma X., Huang W., Yang X., Tu S., Li H.	<i>OsMADS1</i> Regulates Grain Quality, Gene Expressions, and Regulatory Networks of Starch and Storage Protein Metabolisms in Rice.	Int J Mol Sci	24(9)		2023	GLUA1,GLUD1,HAP3K,GLB1,GLUB6,AGPS1,GLUA3,PRO13A.4,GLUB5,GLUC,GLUB1A,LHS1,PRO13A.3,PRO13A.2,RSR1,PRO13A.1,PRO16.2,AGPS2,PRO10.4,GLUA2,GLUB1,AGPL3,AGPL2,GPT1,GLUBX,SUT2,BT1-1,GLUB4	Glua1*, Glua1, GLUA-1, GluA-1, GluA1, Glu19, OsEnS-16,GluD1, GluD-1, OsGluD-1, OsEnS-33, EnS-33, GluD,OsHAP3K/OsNF-YB1, OsHAP3K, OsNF-YB1, NF-YB1, nf-yb1, OsLEC1, OsNF-YB-1, NFYB1, OsEnS-41,glb1(t)*, glb1(t), glb1, alpha-Glb, Glb-1, OsGlb1, Glb1, Glb, OsEnS-77,OsEnS-32, EnS-32, GluB6, OsGluB6,OsAGPS1, APS1, OsAPS1, AGPsma,Glua3*, GLUA-3, GT22, GT3, Glu21, GluA-3, OsEnS-47, EnS-47, GLU3,Prol-25, Prol-28, Prol-29, Prol-30, pro13a.4, OsPRO13A.4, PROLM28,GluB5, GLU2.3 ,GluC, OsEnS-36, EnS-36, GLU2.2, GluC-1, OsGluC-1,GluB, GluB-1a, OsGluB-1a, GluB-1b, GluB1, OsGluB1,OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO, OsLHS1, OsLG3b, LG3b, qLGY3, LGY3, DLN80, OsDLN80, OLR, OsOLR, GW3p6, OsGW3p6, OsMADS1GW3p6, MADS1GW3p6, qLGY3/OsLG3b/GW3p6,Prol-24, pro13a.3, OsPRO13A.3,Prol-19, OsEnS-94, RM1, OsRM1, pro13a.2, OsPRO13A.2, PROLM26,AP2/EREBP#090, AP2/EREBP90, OsTOE1, TOE1, qHD5, AP2-1, AP2/EREBP/RSR1, OsRSR1, DLN130, DLN130a, DLN130b, OsDLN130, OsDLN130a, OsDLN130b,RP6, Prol-18, OsEnS-93, pro13a.1, OsPRO13A.1, PROLM25,Prol-17, OsEnS-88, pro16.2, OsPRO16.2, PROLM24,OsAGPS2a, AGPS2A, AGPS2B, OsAGPS2, osagps2, APS2, APS2a, APS2b, AGPS2a, APGS2b, OsAGPS2b, AGPP, GAS8, OsAPS2, OsAPS2a, OsAPS2b,Prol-23, pro10.4, SSA5, OsPRO10.4,Glua2*, Glua2, GLUA-2, GluA-2, Glu20, GluA2, OsEnS-137,GluB1, GluB1-A, GluB-1a, GluB-1, OsGluB1, GluB-1b, OsGluB-1b, GLUB1B,OsAGPL3, APL3, OsAPL3, AGPlar, OsAGPL1, AGPL1,OsAGPL2, osagpl2, APL2, OsAPL2, AGPiso, sh2, Sh2, GIF2, GAS1 ,OsGPT1, OsGPT2, GPT2,OsGluBX, OsGluBX-J, OsGluBX-I, OsEnS-31, EnS-31, GLU2.1, GluB7, OsGluB7, GluB4, OsGluB4,OsSUT2(t), SUT2M, OsSUT2, OsSUT2M, OsSUT5,OsBT1-1, OsEnS-29, OsBT1, OsBt1, BT1, Bt1, OsBt1-1, shr3, OsBT1-2, BT1-2,GluB4, GluB-4, GluB-5, GluB5, GluB-4/5
53218	36503743	Chen H., Ye R., Liang Y., Zhang S., Liu X., Sun C., Li F., Yi J.	Generation of low-cadmium rice germplasms via knockout of OsLCD using CRISPR/Cas9.	J Environ Sci (China)	126	138-152	2023		
53219	37119729	Sonkar K.S., Achary V.M.M., Sahoo S., Reddy M.K., Arockiasamy A.	Biochemical and structural characterization of a robust and thermostable ascorbate recycling monodehydroascorbate reductase (MDHAR) from stress adapted pearl millet.	Biochem. Biophys. Res. Commun.	662	135-141	2023		
53220	36995901	Fu C., Ma C., Zhu M., Liu W., Ma X., Li J., Liao Y., Liu D., Gu X., Wang H., Wang F.	Transcriptomic and methylomic analyses provide insights into the molecular mechanism and prediction of heterosis in rice.	Plant J.	115(1)	139-154	2023	HD5,SE1,DTH2,GLW7 ,DCL2A,PI3	Hd5(t)*, Hd5, qHD5, HAP3H, OsHAP3H, NF-YB, CBF-A, DTH8 , qHD5(t)*, Ghd8, Ghd8/DTH8, Lhd1, NF-YB11, OsNF-YB11, NFYB11, LH8, DTH8/Ghd8, RH8, DTH8/Ghd8/LHD1, CAR8, DTH8/Ghd8/ OsHAP3H, EF8, OsEF8,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, OsHd1,  Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,OsBBX19, BBX19, OsM, OsDTH2, qDTH-2, OsCCT22, CCT22,OsSPL13, SPL13, OsGLW7,OsDCL2a, OsDCL2, DCL2,Pi3, Pi5, Pi-3(t), Pi-3, Pi3(t), Pi5(t), Pi5-1, Pii,  RMg22, RMg21
53221	37102249	Liu J., Nie B., Yu B., Xu F., Zhang Q., Wang Y., Xu W.	Rice ubiquitin-conjugating enzyme OsUbc13 negatively regulates immunity against pathogens by enhancing the activity of OsSnRK1a.	Plant Biotechnol. J.	21(8)	1590-1610	2023	SH11,PR1B,ICS1,_,_,PR10A,OSK1,UBC13,TIFY10C,WTG1,AOS2,PR4	OsJAmyb, JAmyb, OsJAMyb, OsMYB21, MYB21, Os2R_MYB91, 2R_MYB91, OgSH11, OsSH11,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1, OsPR1a, PR1a,OsICS1, OsICS, ICS,OsPAL05, PAL05, OsPAL3, PAL5, PAL3, OsPAL2;3, PAL2;3, OsPAL2-1, PAL2-1,PR3,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,osk1, SnRK1A, OsSnRK1A, OsSNRK1a, SnRK1A/OSK1, SnRK1a, OsSnRK1.2, SnRK1.2, OsSnRK1alphaA, SnRK1alphaA,OsUbc13, Ubc13, OsUBC47, UBC47,OsJAZ7, JAZ7, OsJAZ 8, OsJAZ8, Os-JAZ8, JAZ8, OsTIFY10c, OsTIFY10c/OsJAZ8,OTUB1, OsOTUB1, OsOTUB1.1, OsOTUB1.2, qNPT1, OsWTG1,OsAOS2, CYP74A2, OsAOS, OsAOS1,OsPR4, OsPR4a, PR4a, OsPR-4
53222	37176824	Park J.R., Seo J., Park S., Jin M., Jeong O.Y., Park H.S.	Identification of Potential QTLs Related to grain size.in Rice.	Plants (Basel)	12(9)		2023	CPQ10	OsCPq10, CPq10
53223	37076789	Purwestri Y.A., Lee Y.S., Meehan C., Mose W., Susanto F.A., Wijayanti P., Fauzia A.N., Nuringtyas T.R., Hussain N., Putra H.L., Gutierrez-Marcos J.	RWP-RK Domain 3 (OsRKD3) induces somatic embryogenesis in black rice.	BMC Plant Biol.	23(1)	202	2023	RKD3,2R_MYB36 ,AP2/EREBP22,HDAC10,JMJ702,ZHD3,RKD10,BLH1,HOX16,BHLH148,RDD2,HAM2,RKD5,RKD9,RKD4,RKD1,RKD7,RKD6,CGA1,NAC14,ERF48,RNG1,NKD,PHR3,MADS37,HOX2,WRKY74,RKD8	OsRKD3,OsMYB2, MYB2, Os2R_MYB36 ,AP2/EREBP#022,OsHDAC10, HDA714, OsHDA714, ASDAC, OsASDAC,OsJMJ702, DLN257, OsDLN257,OsZHD3,OsSTA58, STA58, OsRKD10,OsBLH1,Oshox16, OsHox16, OsHDZ8, OsHDZIP8, HDZ8, HDZIP8,OsbHLH148, bHLH148,OsDof23, Dof23, OsDof-23, OsDof1, OsCDF3, CDF3, OsDof24, Dof24,OsHAM2, OsGRAS-8, OsGRAS8, GRAS-8, GRAS8,OsRKD5,OsRKD9,OsRKD4,OsRKD1,OsRKD7,OsRKD6,Cga1, OsCga1, OsCGA1, OsGATA11, GATA11,ONAC014, ONAC14, OsNAC14, NAC14, OsNAC68, NAC68,OsERF#048, OsERF048, OsERF48, AP2/EREBP#170, AP2/EREBP170, OsDRAP1, DRAP1, OsERF48/OsDRAP1,OsBBX4, BBX4, OsSTH, STH, OsRNG1,IDD10, OsIDD10, OsNKD, OsZOS4-11, ZOS4-11,OsPHR3, Os-PHR3, OsPHL1, PHL1 ,OsMADS37, DLN217, OsDLN217,Oshox2, OsHox2, OsHDZ19, OsHDZIP19, HDZ19, HDZIP19,OsWRKY74,OsRKD8
53224	37013933	Ma N., Li N., Yu Z., Chen C., Zhou D.X., Zhao Y.	The F-box protein SHORT primary root modulates primary root meristem activity by targeting SEUSS-LIKE protein for degradation in rice.	J Integr Plant Biol			2023	SHPR,SEU3,OSK20,OSK1	Os_F0716, OsSHPR,OsSEU3, OsSLK, SLK,SKP20, OsSKP20,SKP1, OsSKP1
53225	37085993	Zhao Y., Zhang X., Cheng Y., Du X., Teotia S., Miao C., Sun H., Fan G., Tang G., Xue H., Zhao Q., Peng T.	The miR167-OsARF12 module regulates rice grain filling and grain size downstream of miR159.	Plant Commun		100604	2023	CDKF;2,GAMYBL2,ARF8	OsCDKF;2,OsGAMYBL2, Os2R_MYB40, 2R_MYB40,OsARF8, OsARF12, ARF12
53226	36920174	Guo Y., Tan Y., Qu M., Hong K., Zeng L., Wang L., Zhuang C., Qian Q., Hu J., Xiong G.	OsWR2 recruits HDA704 to regulate the deacetylation of H4K8ac in the promoter of OsABI5 in response to drought stress.	J Integr Plant Biol	65(7)	1651-1669	2023		
53227	37025008	Jiang L., Yao B., Zhang X., Wu L., Fu Q., Zhao Y., Cao Y., Zhu R., Lu X., Huang W., Zhao J., Li K., Zhao S., Han L., Zhou X., Luo C., Zhu H., Yang J., Huang H., Zhu Z., He X., Friml J., Zhang Z., Liu C., Du Y.	Salicylic acid inhibits rice endocytic protein trafficking mediated by OsPIN3t and clathrin to affect root growth.	Plant J.	115(1)	155-174	2023		
53228	36939166	Ma F., Zhang F., Zhu Y., Lan D., Yan P., Wang Y., Hu Z., Zhang X., Hu J., Niu F., Liu M., He S., Cui J., Yuan X., Yan Y., Wu S., Cao L., Bian H., Yang J., Li Z., Luo X.	Auxin signaling module OsSK41-OsIAA10-OsARF regulates grain yield traits in rice.	J Integr Plant Biol	65(7)	1753-1766	2023	TIR1,SAUR24,ARF6A,ARF17,ARF8,SAUR29,ARF6B,MIR393,IAA12,MIR393B,ARF7B,MP,IAA30,FBOX206,IAA10,IAA6,SAUR38,TGW3	OsTIR1, OsFbox248, Fbox248, Os_F071, AFB,  OsFBL21, FBL21,OsSAUR24,OsARF6a, OsARF6, ARF6,OsARF17,OsARF8, OsARF12, ARF12,OsSAUR29,OsARF6b, OsARF25, ARF25,OsmiR393, osa-MIR393, osa-MIR393a, OsmiR393a, miR393a ,OsIAA12,OsmiR393b, miR393b, osa-MIR393bosa-miR393b osa-miR393b-3p osa-miR393b-5p,OsARF7b, OsARF21, DLN216, OsDLN216,OsMP, OsARF5, OsARF11, DLN125, OsDLN125, OsMP/OsARF11,OsIAA30,OsAFB2, ABF2, OsAFB2-1, OsAFB2-2, OsFbox206, Os_F0492, OsTIR1, TIR1,  OsFBL16, FBL16,OsIAA10, OsIAA5, DLN71, OsDLN71,OsIAA6,OsSAUR38, OsSAURq9, SAURq9,GL3.3, OsSK41, SK41, OsGSK5, GSK5, qTGW3, OsTGW3, OsGSK5/OsSK41, OsSK41/OsGSK5, GL3.3/TGW3
53229	37180398	Lv Y., Zhang X., Hu Y., Liu S., Yin Y., Wang X.	BOS1 is a basic helix-loop-helix transcription factor involved in regulating panicle development in rice.	Front Plant Sci	14	1162828	2023	LAX1,FZP,LRA1,PIN10A,APO1	lax, lax(lx), lx, OsbHLH123, bHLH123, OsLAX1, BOS1, OsBOS1,fzp*, fzp, OsBD1, BD1, OsERF#078, OsERF078, OsERF78, ERF78, AP2/EREBP#133, AP2/EREBP133, BFL1, SGDP7, OsSGDP7,OsPIN2, PIN2, OsLRA1, WAR1, OsWAR1,PIN3A, OsPIN3a, OsPIN3t, OsPIN10a, OsPIN3,apo1(t), apo1, SCM2, SCM2/APO1, OsFbox321, Os_F0393, Pbl6/APO1, Pbl6, OsPbl6,  OsFBX202, FBX202
53230	37102736	Ding Y., Zhang F., Sun F., Liu J., Zhu Z., He X., Bai G., Ni Z., Sun Q., Su Z.	Loss of OsHRC function confers blast resistance without yield penalty in rice.	Plant Biotechnol. J.	21(8)	1516-1518	2023	CCR21,_,PAL1,CAD6,_,ACS6,MYB30,HRC	OsCCR21 ,OsMYB4, Osmyb4, OsMyb4, MYB4, OsMYB55, MYB55, OsMyb8, MYB8, OsMYB13b, MYB13b, OsMYB15, MYB15, Os2R_MYB46, 2R_MYB46,OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6,OsCAD6,OsPAL07, OsPAL, PAL07, OsPAL6, PAL6, PAL1, OsPAL7, PAL7,OsACS6, 4ACS6, Os4ACS6,OsMYB30, OsMYB5P, MYB5P, OsMYB13a, MYB13a, Os2R_MYB26, 2R_MYB26, OsMYB30C, MYB30C,OsHRC
53231	37100819	Guo F., Wang H., Lian G., Cai G., Liu W., Zhang H., Li D., Zhou C., Han N., Zhu M., Su Y., Seo P.J., Xu L., Bian H.	Initiation of scutellum-derived callus is regulated by an embryo-like developmental pathway in rice.	Commun Biol	6(1)	457	2023	PLT6,IAA26,WOX5,PLT2,PIN1D,PLT1,PIN1C,PLT5,MIR393B,ARF7A,PIN1A,ARF2,PLT7,TIR1,ARF8,ARF5,ARF16,LEC1,ARF13,FBOX206,WOX9C,IAA11,CRL1,IAA4,VP1,ARF1,PLT9,LFL1,MIR393,YUCCA1,IAA5,ARF8	OsPLT6, AP2/EREBP#118, AP2/EREBP118, BBM1, OsBBM1, OsBBML1, BBML1, OsASGR-BBML1, ASGR-BBML1,OsIAA26,OsWOX2, Os WOX2, WOX2, OsWOX5, OsWOX2L, WOX2L,OsPLT2, AP2/EREBP#060, AP2/EREBP60, HL6, OsHL6,OsPIN1D, OsPIN1d,OsPLT1, AP2/EREBP#044, AP2/EREBP44, AINTEGUMENTA, OsAINTEGUMENTA,PIN1B, OsPIN1B, OsPIN1b, OsPIN1c,OsPLT5, AP2/EREBP5, AP2/EREBP#005, BBM3, OsBBM3, BBM1, OsBBM1,OsmiR393b, miR393b, osa-MIR393bosa-miR393b osa-miR393b-3p osa-miR393b-5p,OsARF7a, OsARF19, ARF19, OsARF7,PIN1C, OsPIN1C, OsPIN1c, OsPIN1a,OsARF2, OsARF4, ARF4,OsPLT7, AP2/EREBP#088, AP2/EREBP88,OsTIR1, OsFbox248, Fbox248, Os_F071, AFB,  OsFBL21, FBL21,OsARF8,OsARF5,OsARF16,OsHAP3E, HAP3E, OsLEC1/OsHAP3E, OsLEC1, LEC1, OsNF-YB7, NF-YB7, NFYB7, L1L ,OsARF13, OsARF12, ARF12,OsAFB2, ABF2, OsAFB2-1, OsAFB2-2, OsFbox206, Os_F0492, OsTIR1, TIR1,  OsFBL16, FBL16,OsWOX9C, DWL2, OsDWL2, DWL2/WOX9C,OsIAA11,crl1, crl1*, ARL1, ARL1/CRL1, OsLBD3-2, LBD3-2, OsCRL1,OsIAA4, IAA20, OsIAA20,Vp1* (OSVP1), OsVP1, OsVp1, Vp1, ABI3, OsABI3, OsLFL4, OsVp-1, OSVP1,OsARF1, arf1, OsARF23, ARF23,OsPLT9, AP2/EREBP#137, AP2/EREBP137, OsANT,OsLFL1, OsSTA29, STA29,OsmiR393, osa-MIR393, osa-MIR393a, OsmiR393a, miR393a ,OsYUCCA1, OsYUC1, YUC1,OsIAA5,OsARF8, OsARF12, ARF12
53232	37111838	Feng Y., Wu H., Liu H., He Y., Yin Z.	Effects of <i>OsRCA</i> Overexpression on Rubisco Activation State and Photosynthesis in Maize.	Plants (Basel)	12(8)		2023	RCA	OsRcaII, rca, rcaII, OsRcaI, RCAI, ME137, OsRCA1, RCA, RCAalpha, OsRCAalpha, OsRCAbeta
53233	37099454	Liao M., Ma Z., Kang Y., Zhang B., Gao X., Yu F., Yang P., Ke Y.	ENHANCED DISEASE SUSCEPTIBILITY 1 promotes hydrogen peroxide scavenging to enhance rice thermotolerance.	Plant Physiol.			2023	NOE1,CATB,EDS1	CATC, OsCat, OsCatC, OsCATC, OsNOE1, noe1, catC, OsCATC, CAT3, OsCAT3, LLM9428, OsLLM9428,CatB, CAT-B, OsCatB, OsCATB, OsCAT1B, CAT1B, CAT2, OsCAT2,OsEDS1
53234	37108614	Gao Q., Yin X., Wang F., Hu S., Liu W., Chen L., Dai X., Liang M.	<i>OsJRL40</i>, a Jacalin-Related Lectin Gene, Promotes Salt Stress Tolerance in Rice.	Int J Mol Sci	24(8)		2023	LCS,JAC1,WRKY71,KAT1,2R_MYB36 ,ONAC2,AKT1,JRL8,CDPK13	OsHAK1, HAK1,OsJAC1, DIR54, OsDIR54, OsjDIR54, OsJRL29, JRL29,OsWRKY71, WRKY-71,OsKAT1, OsKAT3,OsMYB2, MYB2, Os2R_MYB36 ,SNAC1, snac1, OsNAC9, ONAC002, ONAC2, ONAC033, ONAC33, ONAC043, ONAC43, ONAC044, ONAC44, OsNAC19, NAC19, SNAC1/ONAC002, OsSNAC1, OsNAC9, OsNAC1,OsAKT1, Os-AKT1,OsJRL40, JRL40, OsJRL08, JRL08, OsJRL8,OsCDPK13, OsCPK13, OsCDPK7, CDPK7, OsCPK13-1, OsCPK13-2
53235	37047700	Huang P., Ding Z., Duan M., Xiong Y., Li X., Yuan X., Huang J.	<i>OsLUX</i> Confers Rice cold tolerance as a Positive Regulatory Factor.	Int J Mol Sci	24(7)		2023	PCL1,APX1,ATP6,DREB1B,APX2,DREB1A	OsPCL1, OsLUX, LUX, OsLVP2, LVP2,OsAPX1, APXa, OsAPXa, OsAPx01, OsAPx1, OSAPX1, APx1, cAPX, APX2, cAPXa, OscAPXa,atp6, OsPOX1, prx3, POX1,OsDREB1B, ERF31, OsERF031, OsERF#031, OsERF31, AP2/EREBP#169, AP2/EREBP169, OsDREB1b, OsDREB1C, OsCBF1, CBF1,OsAPX2, OsAPx02, APXb, OsAPx2, OSAPX2, APx2, cAPX, OsAPX1, APX1,OsDREB1A, Os DREB1A, CBF3, OsCBF3, OsDREB1A/OsCBF3, ERF24, OsERF24, OsERF024, OsERF#024, AP2/EREBP#114, AP2/EREBP114, OsDREBL
53236	37021761	Yang M., Sakruaba Y., Ishikawa T., Ohtsuki N., Kawai-Yamada M., Yanagisawa S.	Chloroplastic Sec14-like proteins modulate growth and phosphate deficiency responses in Arabidopsis and rice.	Plant Physiol.			2023	EAS1 ,PHO1;3,PHO1;1,NAC4,PHO1;2,PT9,PT14,SEC14-25,PT10	OsPAO, PAO, OsACD1, ACD1, OsEAS1, RCD2, OsRCD2,OsPHO1;3, OsPHT1,OsPHO1;1,OsNAC4, NAC68, ONAC068, OnNAC4*, OnNAC4, OsNAC4/ONAC068,OsPHO1;2, PHO1.2, OsPHO1.2, PHO1,OsPT9, PHT1-9, OsPht1;9,OsPT14, OsPHT2;1, PHT2;1,OsSec14-25, Sec14-25, OsPITP6, PITP6,OsPT10, PHT1-10, OsPht1;10
53237	37087571	Wu Y., Xiao N., Cai Y., Yang Q., Yu L., Chen Z., Shi W., Liu J., Pan C., Li Y., Zhang X., Zhou C., Huang N., Ji H., Zhu S., Li A.	CRISPR-Cas9-mediated editing of the OsHPPD 3' UTR confers enhanced resistance to HPPD-inhibiting herbicides in rice.	Plant Commun		100605	2023	HPPD	OsHPPD, Osl30, l30
53238	37175822	Zhao J., Meng X., Zhang Z., Wang M., Nie F., Liu Q.	<i>OsLPR5</i> Encoding Ferroxidase Positively Regulates the Tolerance to Salt Stress in Rice.	Int J Mol Sci	24(9)		2023	HKT1,YSL15,P5CS,LPR5	OsHKT1, OsHKT2;1, HKT2;1, Ni (Nipponbare)-OsHKT1, Po (Pokkali)-HKT1, OsHKT1;1, HKT1;1,OsYSL15, OsYs7,OsP5CS, P5CS1, OsP5CS1, OsALDH18B1, ALDH18B1, OsP5CS-1, P5CS-1,OsSTA2, STA2, OsLPR5
53239	37057895	Wang D.H., Liu N., Ye S.D., Chen Z.S., Lin Y.N., Liu Z.H., Xu Z.H., Bai S.N.	Rice tapetum differentiation is sensitive to downregulation of OsUCH3, a ubiquitin C-terminal hydrolase.	Plant Biotechnol. J.	21(7)	1314-1316	2023	UCH3	OsUCH3
53240	37024819	Thapa R., Tabien R.E., Johnson C.D., Septiningsih E.M.	Comparative transcriptomic analysis of germinating rice seedlings to individual and combined anaerobic and cold stress.	BMC Genomics	24(1)	185	2023	LEA3-1,PGIP6,_,WD40-156,WSI18,LEA1,RAB16A,RAB16B,RING18	OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3, OsLEA3A, LEA3A,Ospgip6, pgip6, OsPGIP6,,OsWD40-156,OsLEA14, OsLEA14a, OsLEA14b, wsi18, pwsi18, OsWsi18, OsLEA14/WSI18,OsLEA1, OsLEA2, LEA2,Rab16A, rab21, RAB21, OsRab21, OsRAB21, OsRAB-21, OsRab16A, OsLEA29, rab16A, OsRAB16A,rab21, OsLEA28, OsRAB16D, OsRab16d, Rab16d, OsRAB16b, XERO1, OsXERO1, OsRD22, RD22,OsRING18
53241	37018757	Cheng H., Zhang J., Zhang Y., Si C., Wang J., Gao Z., Cao P., Cheng P., He Y., Chen S., Chen F., Jiang J.	The Cm14-3-3&#x3bc; protein and CCT transcription factor CmNRRa delay flowering in chrysanthemum.	J. Exp. Bot.			2023		
53242	37154077	Liu Q., Teng S., Deng C., Wu S., Li H., Wang Y., Wu J., Cui X., Zhang Z., Quick W.P., Brutnell T.P., Sun X., Lu T.	SHORT ROOT and INDETERMINATE DOMAIN family members govern PIN-FORMED expression to regulate minor vein differentiation in rice.	Plant Cell			2023		
53243	36911988	Laflamme B.	WRKYng together: Coordination between kinase cascades and transcription factors contributes to immunity in rice.	Plant Cell	35(6)	1968-1969	2023	MSRMK2,WRKY55,MKK10-2	OsMSRMK2, OsMAPK5, OsMAP1, OsMPK3, OsBIMK1, OsMAPK2, MPK5, BIMK1, MAPK2, MAPK5, MPK3, OsMPK5, OsMAPK3, OsMAPK5b, MAPK3,OsWRKY55,OsMKK10-2, MKK10-2D, OsMPKK10-2, MPKK10-2, OsMKK10.2, MKK10.2, OsMPKK10-2D, MPKK10-2D, MPKK10.2, OsMAPKK10-2, MAPKK10-2, OsMEK3. MEK3
53244	37191128	Kumar J., Char S.N., Weiss T., Liu H., Liu B., Yang B., Zhang F.	Efficient protein tagging and cis-regulatory element engineering via precise and directional oligonucleotide-based targeted insertion in plants.	Plant Cell			2023		
53245	36869655	Wang S., Han S., Zhou X., Zhao C., Guo L., Zhang J., Liu F., Huo Q., Zhao W., Guo Z., Chen X.	Phosphorylation and ubiquitination of OsWRKY31 are integral to OsMKK10-2-mediated defense responses in rice.	Plant Cell	35(6)	2391-2412	2023	LRA1,ARF8,YUCCA1,PR1A,_,WRKY45,LOX2,MSRMK2,DSG1,AOS2,WRKY76,LC1,MPK6,GH3-8,ARF16,WRKY55,MKK10-2,RAU3,RDCP1	OsPIN2, PIN2, OsLRA1, WAR1, OsWAR1,OsARF8, OsARF12, ARF12,OsYUCCA1, OsYUC1, YUC1,OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1, OsPR1b, PR1alpha, OsPR1alpha,PR1b,OsWRKY45, OsWRKY45-1, OsWRKY45-2, WRKY45-1, WRKY45-2,OsLOX2, OsLOX6, LOX6,OsMSRMK2, OsMAPK5, OsMAP1, OsMPK3, OsBIMK1, OsMAPK2, MPK5, BIMK1, MAPK2, MAPK5, MPK3, OsMPK5, OsMAPK3, OsMAPK5b, MAPK3,OsMAPK6, MAPK6, OsMPK6, OsSIPK, SIPK, OsMAPK1, MAPK1, MPK1, OsMPK1, MPK6, OsDSG1,OsAOS2, CYP74A2, OsAOS, OsAOS1,OsWRKY76, OsWRKY76.1, OsWRKY76.2, OsWRKY76.3,OsGH3-1, GH3-1, OsGH3.1,GH3.1, OsLC1,OsMPK6, OsDR6, DR6, OsMPK4, MPK4, OsMAPK4, MAPK4,OsGH3-8, OsMGH3, OsGH3.8, GH3.8, OsGH3-2,OsARF16,OsWRKY55,OsMKK10-2, MKK10-2D, OsMPKK10-2, MPKK10-2, OsMKK10.2, MKK10.2, OsMPKK10-2D, MPKK10-2D, MPKK10.2, OsMAPKK10-2, MAPKK10-2, OsMEK3. MEK3,OsLAX3, OsRAU3, OsAUX2, LAX3, AUX2, OsAUX3, AUX3, ARF2,OsRDCP1,  OsRING320, RING320, OsREIW1, REIW1
53246	37149120	Kariya K., Fujita A., Ueno M., Yoshikawa T., Teraishi M., Taniguchi Y., Ueno K., Ishihara A.	Natural variation of diterpenoid phytoalexins in rice: Aromatic diterpenoid phytoalexins in specific cultivars.	Phytochemistry	211	113708	2023		
53247	36891818	Konishi N., Mitani-Ueno N., Yamaji N., Ma J.F.	Polar localization of a rice silicon transporter requires isoleucine at both C- and N-termini as well as positively charged residues.	Plant Cell	35(6)	2232-2250	2023		
53248	37126676	Wang A., Jing Y., Cheng Q., Zhou H., Wang L., Gong W., Kou L., Liu G., Meng X., Chen M., Ma H., Shu X., Yu H., Wu D., Li J.	Loss of function of <i>SSIIIa</i> and <i>SSIIIb</i> coordinately confers high RS content in cooked rice.	Proc. Natl. Acad. Sci. U.S.A.	120(19)	e2220622120	2023		
53249	37195873	Duan E., Lin Q., Wang Y., Ren Y., Xu H., Zhang Y., Wang Y., Teng X., Dong H., Wang Y., Jiang X., Chen X., Lei J., Yang H., Chen R., Jiang L., Wang H., Wan J.	The transcriptional hub SHORT INTERNODES1 integrates hormone signals to orchestrate rice growth and development.	Plant Cell			2023		
53250	37207827	Gong X.R., Zhang S.N., Ye L.N., Luo J.J., Zhang C.	Cross talk between Cu excess and Fe deficiency in the roots of rice.	Gene	874	147491	2023		
53251	37252974	Singh D.K., Lian Q., Durand S., Fernandes J.B., Chambon A., Hurel A., Walkemeier B., Solier V., Kumar R., Mercier R.	HEIP1 is required for efficient meiotic crossover implementation and is conserved from plants to humans.	Proc. Natl. Acad. Sci. U.S.A.	120(23)	e2221746120	2023	D61,LE	d61*, dwf42, d61, OsBRI1, OSBRI1, BRI1, Os BRI1, Osbri1, OsBRKq1, BRKq1,OsRHC1, RHC1, OsLE, TT3.1, OsTT3.1,  OsRING133, RING133, DGS1, OsDGS1
53252	37094123	Meyer R.S.	Not an ortholog: Finding new genes that underlie domestication in rice species.	Proc. Natl. Acad. Sci. U.S.A.	120(18)	e2300094120	2023		
53253	37256931	Liu M., Hong G., Li H., Bing X., Chen Y., Jing X., Gershenzon J., Lou Y., Baldwin I.T., Li R.	Sakuranetin protects rice from brown planthopper attack by depleting its beneficial endosymbionts.	Proc. Natl. Acad. Sci. U.S.A.	120(23)	e2305007120	2023		
53254	37204801	Qi J., Yu L., Ding J., Ji C., Wang S., Wang C., Ding G., Shi L., Xu F., Cai H.	Transcription factor OsSNAC1 positively regulates nitrate transporter gene expression in rice.	Plant Physiol.			2023		
53255	37324722	Yu J.S., You M.K., Lee Y.J., Ha S.H.	Stepwise protein targeting into plastoglobules are facilitated by three hydrophobic regions of rice phytoene synthase 2.	Front Plant Sci	14	1181311	2023	PSY2	OsPSY2
53256	37244501	Kesawat M.S., Kherawat B.S., Katara J.L., Parameswaran C., Misra N., Kumar M., Chung S.M., Alamri S., Siddiqui M.H.	Genome-wide analysis of proline-rich extensin-like receptor kinases (PERKs) gene family reveals their roles in plant development and stress conditions in Oryza sativa L.	Plant Sci.	334	111749	2023	PERK2,RLCK175,_,PERK1,PERK4,PERK7,PERK3,PERK8	OsPERK2,OsRLCK175, OsPERK5, PERK5,OsSTA174, RHS10, OsPERK6, PERK6,OsPERK1,OsPERK4,OsSTA186, OsPERK7,OsPERK3,OsPERK8
53257	37239859	Yang Y., Zhang Y., Zhang L., Zhou Z., Zhang J., Yang J., Gao X., Chen R., Huang Z., Xu Z., Li L.	Isolation of <i>Bacillus siamensis</i> B-612, a Strain That Is Resistant to Rice blast disease and an Investigation of the Mechanisms Responsible for Suppressing Rice Blast Fungus.	Int J Mol Sci	24(10)		2023	NH1,WRKY45,TOND1,BWMK1,PR10A,WRKY53,POX22.3,DSG1,EREBP1,PR1A,CEBIP,LYP6	OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2, DLN5, OsDLN5,  OsBTBA1, BTBA1,OsWRKY45, OsWRKY45-1, OsWRKY45-2, WRKY45-1, WRKY45-2,OsTOND1, OsPR5a, PR5a,OsBWMK1, MPK12, MAPK1, OsMAPK1, OsMPK12, OsMPK17-1, MPK17-1, OsBWMK1L, OsBWMK1M, OsBWMK1S, OsMAPK17-1, MAPK17-1, MAPK12, OsMAPK12,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsWRKY53, WRKY-53,POX22.3, OSPER, OsPOX, POX, Pir3, prx111, POX22, OsPOX1, POX1, OsPOX22.3, OsPR9, PR9,OsMAPK6, MAPK6, OsMPK6, OsSIPK, SIPK, OsMAPK1, MAPK1, MPK1, OsMPK1, MPK6, OsDSG1,OsEREBP1, OsERF#070, OsERF070, OsERF70, ERF70, AP2/EREBP#084, AP2/EREBP84,OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1, OsPR1b, PR1alpha, OsPR1alpha,CEBiP, Os-LYP1, LYP1, OsCEBiP,Os-LYP6, OsLYP6
53258	37239449	Ashfaq M., Rasheed A., Zhu R., Ali M., Javed M.A., Anwar A., Tabassum J., Shaheen S., Wu X.	Genome-Wide Association Mapping for Yield and Yield-Related Traits in Rice (<i>Oryza Sativa</i> L.) Using SNPs Markers.	Genes (Basel)	14(5)		2023	_	
53259	37248234	Li Y., Wu S., Huang Y., Ma X., Tan L., Liu F., Lv Q., Zhu Z., Hu M., Fu Y., Zhang K., Gu P., Xie D., Sun H., Sun C.	OsMADS17 simultaneously increases grain number and grain weight in rice.	Nat Commun	14(1)	3098	2023	COG1,LHS1,ERF77	OsMADS17, MADS17, NMADS3, RMADS213, nmads3,OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO, OsLHS1, OsLG3b, LG3b, qLGY3, LGY3, DLN80, OsDLN80, OLR, OsOLR, GW3p6, OsGW3p6, OsMADS1GW3p6, MADS1GW3p6, qLGY3/OsLG3b/GW3p6,OsAP2-39, AP2-39, OsERF#077, OsERF077, OsERF77, AP2/EREBP#149, AP2/EREBP149, DLN121, OsDLN121
53260	37156920	Mai N.T.P., Nguyen L.T.T., Tran S.G., To H.T.M.	Genome-wide association study reveals useful QTL and genes controlling the fatty acid composition in rice bran oil using Vietnamese rice landraces.	Funct. Integr. Genomics	23(2)	150	2023		
53261	37243818	Balyan S., Kansal S., Jajo R., Behere P.R., Chatterjee R., Raghuvanshi S.	Delineating the tissue-mediated drought stress governed tuning of conserved miR408 and its targets in rice.	Funct. Integr. Genomics	23(2)	187	2023		
53262	37248220	Xia C., Liang G., Chong K., Xu Y.	The COG1-OsSERL2 complex senses cold to trigger signaling network for chilling tolerance in japonica rice.	Nat Commun	14(1)	3104	2023	SERL2,MSRMK2,COG1	OsSERL2, SERK1, OsBAK1-7, BAK1-7,OsMSRMK2, OsMAPK5, OsMAP1, OsMPK3, OsBIMK1, OsMAPK2, MPK5, BIMK1, MAPK2, MAPK5, MPK3, OsMPK5, OsMAPK3, OsMAPK5b, MAPK3,OsCOG1
53263	36913253	Yin S., Chen Y., Chen Y., Xiong L., Xie K.	Genome-wide profiling of rice Double-stranded RNA-Binding Protein 1-associated RNAs by targeted RNA editing.	Plant Physiol.	192(2)	805-820	2023	DRB1	OsDRB1
53264	37312747	Jang Y.H., Park J.R., Kim E.G., Jan R., Asif S., Farooq M., Zhao D.D., Kim K.M.	Efficient identification of palatability-related genes using QTL mapping in rice breeding.	Mol. Breed.	43(5)	39	2023		
53265	36905369	Xie E., Chen J., Wang B., Shen Y., Tang D., Du G., Li Y., Cheng Z.	The transcribed centromeric gene OsMRPL15 is essential for pollen development in rice.	Plant Physiol.	192(2)	1063-1079	2023	MRPL15	Cen8.t00833, OsMRPL15
53266	37184674	Chowrasia S., Nishad J., Mahato R., Kiran K., Rajkumari N., Panda A.K., Rawal H.C., Barman M., Mondal T.K.	Allantoin improves salinity tolerance in Arabidopsis and rice through synergid activation of abscisic acid and brassinosteroid biosynthesis.	Plant Mol. Biol.	112(3)	143-160	2023		
53267	37239869	Zhou M., Jiang Y., Liu X., Kong W., Zhang C., Yang J., Ke S., Li Y.	Genome-Wide Identification and Evolution Analysis of the <i>CYP76</i> Subfamily in Rice (<i>Oryza sativa</i>).	Int J Mol Sci	24(10)		2023	CYP76-14,CYP76M5,CYP76M17,CYP76-13,CYP76M6,CYP76M1,CYP76M2,CYP76L1,CYP76-6,CYP76-17,CYP76M14,CYP76M8,CYP76M9,CYP76-15,CYP76-16,CYP76M10,CYP76M7	OsCYP76-14,OsCYP76M5, OsCYP76-2, CYP76-2, OsCYP71T4, CYP71T4,OsCYP76M17, OsTyM/Hq6, TyM/Hq6, OsCYP76-8, CYP76-8,OsCYP76-13, OsCYP71T10, CYP71T10,OsCYP76M6, OsCYP76-5, CYP76-5, OsCYP71T5, CYP71T5,OsCYP76M1, OsCYP76-9, CYP76-9, OsCYP71T8, CYP71T8,OsCYP76M2, OsCYP76-11, CYP76-11,OsCYP76L1, OsCYP76-12, CYP76-12, OsCYP71E4, CYP71E4,OsCYP76-6, OsCYP71AB8, CYP71AB8,OsCYP76-17, OsCYP71AB2, CYP71AB2,OsCYP76M14, OsCYP76-1, CYP76-1,OsCYP76M8, OsCYP76-3, CYP76-3,CYP76M9, OsCYP76-7, CYP76-7, OsCYP71T7, CYP71T7,OsCYP76-15,OsCYP76-16, OsCYP71AB1, CYP71AB1,OsCYP76M10, OsCYP76-10, CYP76-10, OsCYP71T9, CYP71T9,OsCYP76M7, CYP76M10, OsCYP76M10, OsCYP76-4, CYP76-4
53268	37029489	Wang Q., Shen T., Ni L., Chen C., Jiang J., Cui Z., Wang S., Xu F., Yan R., Jiang M.	Phosphorylation of OsRbohB by the protein kinase OsDMI3 promotes H2O2 production to potentiate ABA responses in rice.	Mol Plant	16(5)	882-902	2023		
53269	37299101	Pei M., Xie X., Peng B., Chen X., Chen Y., Li Y., Wang Z., Lu G.	Identification and Expression Analysis of Phosphatidylinositol Transfer Proteins Genes in Rice.	Plants (Basel)	12(11)		2023	SEC14-18,SNDP9,SEC14-25,SEC14-17,SEC14-3,SNDP3,SNDP4,SEC14-22,SEC14-7,SEC14-27,ML-2,SNDP8,SEC14-26,SEC14-1,SEC14-13,SEC14-11,SEC14-12,SNDP7,SEC14-4,SEC14-14,SEC14-10,SEC14-19,PITPALPHA,SNDP1,SNDP2,ML-1,SNDP5,SNDP6,SEC14-15,SNDP10	OsSec14-18, Sec14-18,OsSNDP9, OsSec14-21, Sec14-21,OsSec14-25, Sec14-25, OsPITP6, PITP6,OsSec14-17, Sec14-17,OsSec14-3, Sec14-3,OsSNDP3, OsSec14-6, Sec14-6,OsSNDP4, OsSec14-5, Sec14-5,OsSec14-22, Sec14-22,OsSec14-7, Sec14-7,OsSec14-27, Sec14-27,OsML-2, ML2, OsML2,OsSNDP8, OsSec14-9, Sec14-9,OsSec14-26, Sec14-26,OsSec14-1, Sec14-1,OsSec14-13, Sec14-13,OsSec14-11, Sec14-11,OsSec14-12, Sec14-12,OsSNDP7, OsSec14-20, Sec14-20,OsSec14-4, Sec14-4,OsSec14-14, Sec14-14,OsSec14-10, Sec14-10,OsSec14-19, Sec14-19,OsPitpalpha, Pitpalpha,OsSNDP1, OsSec14-24, Sec14-24,OsSNDP2, OsSec14-8, Sec14-8,OsML-1, ML1, OsML1,OsSNDP5, OsSec14-2, Sec14-2,OsSNDP6, OsSec14-16, Sec14-16,OsSec14-15, Sec14-15,OsSNDP10, OsSec14-23, Sec14-23
53270	37298171	Gong F., Zhang K., Wen J., Yu S., Li W., Du G., Wu C., Zhu K., Xu Y.	Rice OsMRG702 and Its Partner OsMRGBP Control flowering time through H4 Acetylation.	Int J Mol Sci	24(11)		2023	MRG702,RFT1,HD3A,GHD7,MRGBP,EF1,EHD3	OsMRG702,FT-L 3, OsFTL3, FTL3, FT-L3, RFT, OsRFT1,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,Ghd2, Ghd7, OsGhd7, OsCCT26, OsCMF8, OsI, Ghd7/Hd4, Hd4, EH7-1/Hd4, Ghd7-0a, EH7-1, EH7/Ghd7, EH7, OsEH7, GLW7.1, OsGLW7.1,OsMRGBP,Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,Ehd3, OsPHD36, PHD36
53271	37209314	Jiang W.J., Wang M.T., Du Z.Y., Li J.H., Shi Y., Wang X., Wu L.Y., Chen J., Zhong M., Yang J., Hu B.H., Huang J.	Bioinformatic and functional analysis of OsDHN2 under cadmium stress.	Funct. Integr. Genomics	23(2)	170	2023		
53272	37133258	Zhang Y., Gan L., Zhang Y., Huang B., Wan B., Li J., Tong L., Zhou X., Wei Z., Li Y., Song Z., Zhang X., Cai D., He Y.	OsCBL5-CIPK1-pp23 module enhances rice grain size and weight through the gibberellin pathway.	Plant J.			2023	KS1,CIPK03,PP23,CPS1,CBL5,GW7,GS5,GS2,GW6,ILI6,GA2OX1,CIPK04,GID1,EXPA4,GA20OX3,EXPB5,D18,EXPA10,EXPB2,SLR1,D35,KAO,CIPK18,CIPK01	OsKS1, KS1, KS1A, KSL1, OsKSL1, OsKS1A, OsKS1B, OsKS1C, Ks1, Os KS1, OsTPS26, TPS6, OsTPS6,OsCIPK03, CIPK3, OsCIPK3, OsSnRK3.27, SnRK3.27,OsPP23, PKG, OsPKG,OsCPS1, OsCPS1ent, OsCPS, Os CPS1, OsTPS4, TPS4, TPS29, OsTPS29, OsCPS1-L, OsCPS1-S,OsCBL5,GL7, OsGL7, OsGW7, qGW7, qGL7, SLG7, GL7/GW7/SLG7, qPY7, GL7/SLG7, Chalk7, OsChalk7,OsSCP26, SCP26, OsGS5,OsGRF4, GRF4, GS2/OsGRF4, PT2, GLW2, GS2/GL2, LGS1, OsLGS1,OsGSR1, GSR1, OsGASR7, GASR7, OsGW6, OsGASR7/GW6,ILI6, OsILI6, PGL1, OsPGL1,OsGA2ox1, ga2ox-1, OsGA2ox-1, ga2ox, ga2ox 1, GA2ox1,OsCIPK04, CIPK4, OsCIPK4, OsSnRK3.35, SnRK3.35,gid1, OsGID1, Thl, Os GID1,OsEXP4 (Os-EXP4), OsEXPA4, OsEXP4, Os-EXP4, OsaEXPa1.22,OsGA20ox3, ga20ox3,OsEXPB5, osaEXPb1.19,d18-h  (d18-I, d18h), dwf15, d25, d18, d18-k, d18-AD, d18-dy, OsGA3ox2, ga3ox2, OsGA3OX2, GA3OX2, OsGA3ox-2, GA3ox-2, GA3ox1,OsEXPA10, OsEXP10, osaEXPa1.28,OsEXPB2, OsaEXPb1.9, EXPb1.9,slr1-1, slr1, slr, GAI, OsGAI, OsSLR1, Os SLR1, OsRGA1, OsGRAS-18, OsGRAS-18, GRAS-18, GRAS18, SLR-1,d35, d35(t), dwf30, OsKOL2, KOL2, KO2, OsKO2, OSKO2, KO, CYP701A, CYP701A6, Os KO2, OsKOL2/CYP701A,OsKAO, kao, CYP88A5, OSKAO, Os KAO, RPE1, KO1,OsCIPK18, OsSnRK3.16, SnRK3.16,OsCIPK01, CIPK1, OsCIPK1, OsSnRK3.3, SnRK3.3
53273	37196413	Liu R., Huang S., Huang A., Chen M., Luo Y., Guo Z., Lu S.	Overexpression of CdtCIPK21 from triploid bermudagrass reduces salt and drought tolerance but increases chilling tolerance in transgenic rice.	J. Plant Physiol.	286	154006	2023		
53274	37219719	Yang M.Y., Yang X., Yan Z., Chao Q., Shen J., Shui G.H., Guo P.M., Wang B.C.	OsTST1, a key tonoplast sugar transporter from source to sink, plays essential roles in affecting yields and height of rice (Oryza sativa L.).	Planta	258(1)	4	2023		
53275	37133286	Meng Y., Zhan J., Liu H., Liu J., Wang Y., Guo Z., He S., Nie L., Kohli A., Ye G.	Natural variation of OsML1, a mitochondrial transcription termination factor, contributes to mesocotyl length variation in rice.	Plant J.			2023	_	OsML1, ML1
53276	37097548	Li J., Zhang Y., Li Z., Dai H., Luan X., Zhong T., Chen S., Xie X.M., Qin G., Zhang X.Q., Peng H.	OsPEX1, an extensin-like protein, negatively regulates root growth in a gibberellin-mediated manner in rice.	Plant Mol. Biol.	112(1-2)	47-59	2023		
53277	37199729	Maidment J.H.R., Shimizu M., Bentham A.R., Vera S., Franceschetti M., Longya A., Stevenson C.E.M., De la Concepcion JC., Bia&#x142;as A., Kamoun S., Terauchi R., Banfield M.J.	Effector target-guided engineering of an integrated domain expands the disease resistance profile of a rice NLR immune receptor.	Elife	12		2023	PIK,HIPP19	Pik, RMg8, Pi-k, Pik-2, Pik-1, Pik1, Pik2, Pik-H4, Pikp-1, Pikh-1, Pik1-H4, Pikh-2, Pik2-H4,OsHIPP19, OsaHIP19, HIP19
53278	37195059	Kim E.J., Kim J.H., Hong W.J., Kim E.Y., Kim M.H., Lee S.K., Min C.W., Kim S.T., Park S.K., Jung K.H., Kim Y.J.	Rice pollen-specific OsRALF17 and OsRALF19 are essential for pollen tube growth.	J Integr Plant Biol			2023		
53279	37178216	Xun Q., Song Y., Mei M., Ding Y., Ding C.	The SMC5/6 complex subunit MMS21 regulates stem cell proliferation in rice.	Plant Cell Rep.	42(8)	1279-1290	2023		
53280	37154721	Bu Z., Li W., Liu X., Liu Y., Gao Y., Pei G., Zhuo R., Cui K., Qin Z., Zheng H., Wu J., Yang Y., Su P., Cao M., Xiong X., Liu X., Zhu Y.	The Rice Endophyte-Derived &#x3b1;-Mannosidase ShAM1 Degrades Host Cell Walls To Activate DAMP-Triggered Immunity against Disease.	Microbiol Spectr	11(3)	e0482422	2023	DSG1,AOS2,PR1A,PR10A,WRKY70	OsMAPK6, MAPK6, OsMPK6, OsSIPK, SIPK, OsMAPK1, MAPK1, MPK1, OsMPK1, MPK6, OsDSG1,OsAOS2, CYP74A2, OsAOS, OsAOS1,OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1, OsPR1b, PR1alpha, OsPR1alpha,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsWRKY70
53281	37324427	Han Z., Maruwan J., Tang Y., Su W.W.	Conditional protein degradation in <i>Yarrowia lipolytica</i> using the auxin-inducible degron.	Front Bioeng Biotechnol	11	1188119	2023		
53282	37177781	Liu Z., Qiu J., Shen Z., Wang C., Jiang N., Shi H., Kou Y.	The E3 ubiquitin ligase OsRGLG5 targeted by the Magnaporthe oryzae effector AvrPi9 confers basal resistance against rice blast.	Plant Commun		100626	2023	RING84,PAL1,RING85,RING86,RING89,NAC4,RING88,RFPHC-2	OsRING84, OsvWA20, vWA20, OsRGLG5, RGLG5,OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6,OsRING85, OsvWA39, vWA39, OsRGLG2, RGLG2,OsRFP,  OsRING86, OsvWA2, vWA2, OsRGLG1, RGLG1,OsRING89, OsvWA26, vWA26, OsRGLG6, RGLG6,OsNAC4, NAC68, ONAC068, OnNAC4*, OnNAC4, OsNAC4/ONAC068,OsRING88, OsvWA3, vWA3, OsRGLG3, RGLG3,OsRFPHC-2, OsRING87, RING87, OsvWA25, vWA25, OsRGLG4, RGLG4
53283	37312752	Wang Q., Chen P., Wang H., Chao S., Guo W., Zhang Y., Miao C., Yuan H., Peng B.	Physiological and transcriptomic analysis of OsLHCB3 knockdown lines in rice.	Mol. Breed.	43(5)	38	2023		
53284	37155011	Mishra A., Sahoo J.P., Swain B., Nanda S., Mishra T.K., Dwibedi S.K., Jena B., Pradhan B., Parida M.R., Jena P.K., Samantaray S.M., Samantaray D., Mohanty M.K., Dash M.	Biochemical and SSR based molecular characterization of elite rice varieties for straw lignocellulose.	Mol. Biol. Rep.	50(7)	5535-5545	2023		
53285	37212208	Tseng B.S., Huang C.C., King Y.C., Wu M.T., Hsieh C.H., Hsieh K.T., Hsing Y.I., Jeng S.T.	Hydrogen peroxide regulates the Osa-miR156-OsSPL2/OsTIFY11b module in rice.	Plant Cell Environ.	46(8)	2507-2522	2023		
53286	37148321	Liu J., Jie W., Shi X., Ding Y., Ding C.	Transcription elongation factors OsSPT4 and OsSPT5 are essential for rice growth and development and act with APO2.	Plant Cell Rep.	42(7)	1217-1231	2023	RFL,SPT4,SPT5-1,SPT5-2	RFL, OSL, FL, APO2, APO2/RFL, SSC, SSC/RFL/APO2, OsRFL, OsFL, OsAPO2, OsSSC,OsSPT4,OsSPT5-1,OsSPT5-2
53287	37230965	Zhang H., Wang F., Song W., Yang Z., Li L., Ma Q., Tan X., Wei Z., Li Y., Li J., Yan F., Chen J., Sun Z.	Different viral effectors suppress hormone-mediated antiviral immunity of rice coordinated by OsNPR1.	Nat Commun	14(1)	3011	2023	NOMT,BHLH9,LHS1,SPL88 ,TIFY9,NH1,TIFY11A,TIFY11C,BHLH10	OsNOMT, COMTL3, OsCOMTL3, OsCOMT29, COMT29,OsbHLH009, bHLH009, OsMYC2, MYC2,OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO, OsLHS1, OsLG3b, LG3b, qLGY3, LGY3, DLN80, OsDLN80, OLR, OsOLR, GW3p6, OsGW3p6, OsMADS1GW3p6, MADS1GW3p6, qLGY3/OsLG3b/GW3p6,OsCUL3a, CUL3a, OsSPL88 ,OsJAZ11, OsJAZ5, OsTIFY9, JAZ11, JAZ5, JAZ11/TIFY9 ,OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2, DLN5, OsDLN5,  OsBTBA1, BTBA1,OsJAZ3, JAZ3, OsJAZ 9, OsJAZ9, Os-JAZ9, JAZ9, OsTIFY11a, OsJAZ6, JAZ6,OsJAZ2, JAZ2, OsJAZ 11, OsJAZ11, Os-JAZ11, JAZ11, OsTIFY11c, OsJAZ1, JAZ1,OsICE1, ICE1, OsbHLH010, bHLH010, OsMYL1, MYL1, bHLH116, OsMYC3, MYC3 
53288	37205779	Han Y., Jiang S.Z., Zhong X., Chen X., Ma C.K., Yang Y.M., Mao Y.C., Zhou S.D., Zhou L., Zhang Y.F., Huang X.H., Zhang H., Li L.G., Zhu J., Yang Z.N.	Low temperature compensates for defective tapetum initiation to restore the fertility of the novel TGMS line OsTMS15.	Plant Biotechnol. J.	21(8)	1659-1670	2023	ACS9,MSP1,MS2,DFR2 ,CYP704B2,PTC1,CYP703A3,PTC2,MIL2,TDR,PKS10,LAP6,TDF1,MS188,ABCG15	OsACS9, 4CL4, OsACOS12, ACOS12 ,Msp1, OsMSP1, OsTMS15, TMS15,OsMS2, OsDPW, DPW, DPW1, OsDPW1, OsFAR2, FAR2,OsTKPR1, TKPR1, OsDFR2, OS-DFR2, OsDFR2A, DFR2A, OsCCRL1, CCRL1,OsCYP704B2,OsMS1, tms9-1, OsPTC1, MS1, TMS9-1, OsTMS9-1,OsCYP703A3,OsPTC2, OsAHL4, AHL4,OsTDL1A, TDL1A, OsMIL2, OsTDL1A/MIL2, OsTDL1a ,tdr, OsbHLH005, bHLH005, OsbHLH5, bhlh5, TDR1, OsTDR, OsTDR1, OsMYC5, MYC5,OsPKS10, OsPKS2, PKS2, OsCHS10, CHS10,OsPKS1, PKS1, YY2, OsPKS21, PKS21, OsLAP6/OsPKS1, OsLAP6, OsCHS22, CHS22,OsTDF1, MYB35, OsMYB35,OsMYB80, MYB80, OsMS188, Os2R_MYB44, 2R_MYB44, OsMYB103/OsMYB80/OsMS188/BM1, OsMYB103, MYB103,OsABCG15, PDA, PDA1, OsABCG15/PDA1
53289	37146523	Islam F., Khan M.S.S., Ahmed S., Abdullah M., Hannan F., Chen J.	Corrigendum to "OsLPXC negatively regulates tolerance to cold stress via modulating oxidative stress, antioxidant defense and JA accumulation in rice" [Free Radic. Biol. Med. 199 (2023) 2-16].	Free Radic. Biol. Med.	204	82	2023		
53290	37218180	Liu X., Gong X., Zhou D., Jiang Q., Liang Y., Ye R., Zhang S., Wang Y., Tang X., Li F., Yi J.	Plant Defensin-Dissimilar Thionin <i>OsThi9</i> Alleviates Cadmium Toxicity in Rice Plants and Reduces Cadmium Accumulation in Rice Grains.	J. Agric. Food Chem.	71(22)	8367-8380	2023		
53291	37233621	Chen Y., Han J., Wang X., Chen X., Li Y., Yuan C., Dong J., Yang Q.	OsIPK2, a rice Inositol polyphosphate kinase gene, is involved in phosphate homeostasis and root development.	Plant Cell Physiol.			2023		
53292	37139586	Gupta A., Liu B., Chen Q.J., Yang B.	High-efficiency prime editing enables new strategies for broad-spectrum resistance to bacterial blight of rice.	Plant Biotechnol. J.	21(7)	1454-1464	2023	XA5,XA23,XA41	xa5, xa-5, Xa5, TFIIAy, OsTFIIAgamma5, TFIIAgamma5, OsTFIIAgamma5/Xa5,Xa23(t)*, Xa23(t), Xa23, Xa23-Ni ,OsSWEET14, SWEET14, Os11N3, Os-11N3, 11N3, Xa41(t), xa41, Os11N3/SWEET14, OsSWEET14/Os11N3
53293	37235693	Du H., Yong R., Zhang J., Cai G., Wang R., Li J., Wang Y., Zhang H., Gao X., Huang J.	osbak2/OsSERK2 Expression is Repressed by OsBZR1 to Modulate Brassinosteroid Response and Grain Length in Rice.	J. Exp. Bot.			2023		
53294	37324705	Yan J., Ninkuu V., Fu Z., Yang T., Ren J., Li G., Yang X., Zeng H.	OsOLP1 contributes to drought tolerance in rice by regulating ABA biosynthesis and lignin accumulation.	Front Plant Sci	14	1163939	2023	ABA1,NCED1,PRODH,P5CS,ALDH18B2,OLP1	OsABA1, Zep1, OsAba1, Aba2, OsAba2, OsZep1, Zep, OsZep, Aba1, OsABA2, Osaba1, OsZEP-1, OsZEP, OSZEP1, ZEP1, ZEP,OSNCED1, OsNCED-1, OsNCED3, OsNced3, NCED3, OsNCED9, NCED9,OsProDH, OsPDH, PDH,OsP5CS, P5CS1, OsP5CS1, OsALDH18B1, ALDH18B1, OsP5CS-1, P5CS-1,P5CS2, OsP5CS2, OsALDH18B2 ,PR5, OsOLP1
53295	36943290	Zhao Q., Liu R., Zhou Q., Ye J., Meng F., Liu J., Yang C.	Calcium-binding protein OsANN1 regulates rice blast disease resistance by inactivating jasmonic acid signaling.	Plant Physiol.	192(2)	1621-1637	2023		
53296	36871671	Su X., Liu X., Zhang Y., Li C.	Identification of a Phase I mechanism gene of rice (OsCYP1) in response to isoproturon.	Gene	866	147333	2023		
53297	36952381	Wang L., Xu G., Li L., Ruan M., Bennion A., Wang G.L., Li R., Qu S.	The OsBDR1-MPK3 module negatively regulates blast resistance by suppressing the jasmonate signaling and terpenoid biosynthesis pathway.	Proc. Natl. Acad. Sci. U.S.A.	120(13)	e2211102120	2023	AOS2,SIT3,JAR1,AOC,BHLH9,TPS29,MSRMK2,TIFY10C,DSG1,TPS3,AOS1	OsAOS2, CYP74A2, OsAOS, OsAOS1,OsSIT3, OsBDR1, BDR1,OsJAR1, OsGH3.5, GH3.5, OsGH3-5, GH3-5,OsAOC, AOC1, OsAOC1, HB, CPM2, OsAOC4, AOC4,OsbHLH009, bHLH009, OsMYC2, MYC2,OsTPS29, OsCAS, CAS, OsTPS3, TPS3, TPS33, OsTPS33,OsMSRMK2, OsMAPK5, OsMAP1, OsMPK3, OsBIMK1, OsMAPK2, MPK5, BIMK1, MAPK2, MAPK5, MPK3, OsMPK5, OsMAPK3, OsMAPK5b, MAPK3,OsJAZ7, JAZ7, OsJAZ 8, OsJAZ8, Os-JAZ8, JAZ8, OsTIFY10c, OsTIFY10c/OsJAZ8,OsMAPK6, MAPK6, OsMPK6, OsSIPK, SIPK, OsMAPK1, MAPK1, MPK1, OsMPK1, MPK6, OsDSG1,OsTPS3, OsLIS, LIS, TPS22, OsTPS22,OsAOS, OsAOS1, CYP74A1, OsAOS2, AOS2
53298	36519262	Li J., Zhang B., Duan P., Yan L., Yu H., Zhang L., Li N., Zheng L., Chai T., Xu R., Li Y.	An endoplasmic reticulum-associated degradation-related E2-E3 enzyme pair controls grain size and weight through the brassinosteroid signaling pathway in rice.	Plant Cell	35(3)	1076-1091	2023	D61,SMG3,LE	d61*, dwf42, d61, OsBRI1, OSBRI1, BRI1, Os BRI1, Osbri1, OsBRKq1, BRKq1,OsUBC45, UBC45, OsSMG3,OsRHC1, RHC1, OsLE, TT3.1, OsTT3.1,  OsRING133, RING133, DGS1, OsDGS1
53299	36927123	Liu W.Z., Li Z.Y., Liu C., Yu X.T., Yu W.Q., Li P.	<i>Paenibacillus terrae</i> NK3-4 regulates the transcription of growth-related and stress resistance-related genes in rice.	Genome	66(6)	131-149	2023	ERF133,DLN254,TIFY11D,PRX87,_,NAC17,2R_MYB36 ,MYB30,PRX134,PAD4,PR1A,NAC51,TIFY11E,NAC12,_,MYB86,NAC29,PRX37,RING66,MYB102,_,_,TIFY11B,EL5,PR1-101,_,POX3006,WRKY47,CHIB1,RING62,NAC4,CML14,2R_MYB73 ,CML10,NAC59,ERF91,NPR4,_,PRX128,PRX40,PRX39,_	OsERF#133, OsERF133, AP2/EREBP#065, AP2/EREBP65, OsDREB1H, DREB1H, OsDREB1m, DREB1m,R2R3-MYB, OsDLN254, OsMYB2, Os2R_MYB94, 2R_MYB94,OsTIFY11d, OsJAZ1, JAZ1, OsJAZ 12, OsJAZ12, JAZ12,prx87, OsPRX87, POD87, OsPOD87,OsNPK1-PK, NPK1-PK, OsMKKK62, MKKK62, OsMAPKKK62, MAPKKK62, MEK7, OsMEK7,ONAC017, ONAC17, ONAC030, ONAC30, OsNAC111,OsMYB2, MYB2, Os2R_MYB36 ,OsMYB30, OsMYB5P, MYB5P, OsMYB13a, MYB13a, Os2R_MYB26, 2R_MYB26, OsMYB30C, MYB30C,prx134, OsPRX134, POD134, OsPOD134,OsPAD4,OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1, OsPR1b, PR1alpha, OsPR1alpha,ONAC051, ONAC51,OsJAZ 13, OsJAZ13,JAZ13, OsTIFY11e, OsJAZ13a, OsJAZ13b, OsJAZ13c, OsJAZ13d,ONAC012, ONAC12,EL5,OsMYB86,ONAC029, ONAC29, OsSWN2, OsSWN2L, OsSWN2S, OsNST1/2, SWN2, SWN2L, SWN2S, NST1/2, DLN201, OsDLN201,prx37, OsPRX37, POD37, OsPOD37,OsRING66,R2R3-MYB, OsMYB102, OsMYB81, MYB81,EL5,OsPAL04, PAL04, PAL, OsPAL7, PAL7,OsJAZ4, JAZ4, OsJAZ 10, OsJAZ10, JAZ10, OsTIFY11b,EL5.1, EL5.2, EL5.3, EL5.4, EL5.5, EL5.6,  OsRING64, RING64,OsPR1#101, OsPR1-101, OsPR1L2, PR1L2, OsPRB1, PRB1,ONAC008, ONAC8, NAC8,POX3006, prx114, Osprx114, PO-C1, POC-1, POC1, OsPOC1, Prx14, OsPrx14, POD3006, OsPOD3006,OsWRKY47,Oschib1, chib1, PR-8, PR8, OsPR8, OsPR8b, PR8b,OsRING62,OsNAC4, NAC68, ONAC068, OnNAC4*, OnNAC4, OsNAC4/ONAC068,OsCML14,R2R3-MYB, Os2R_MYB73 ,OsCML10,ONAC059, ONAC59,OsERF#091, OsERF091, OsERF91, AP59, OsAP59, AP2/EREBP#147, AP2/EREBP147, OsBIERF3, BIERF3,OsNPR4,OsMYB4, Osmyb4, OsMyb4, MYB4, OsMYB55, MYB55, OsMyb8, MYB8, OsMYB13b, MYB13b, OsMYB15, MYB15, Os2R_MYB46, 2R_MYB46,prx128, OsPRX128, POD128, OsPOD128,prx40,Os PRX40, POD40, OsPOD40,prx39, OsPRX39, OsPRX-A2, PRX-A2, POD39, OsPOD39,OsPR2, PR2, OsGlu1, Glu1
53300	36651123	Herrera-Ubaldo H.	Quality check: ER-associated protein degradation and the control of grain size in rice.	Plant Cell	35(3)	967-968	2023	D61,LE,SMG3,BZR1	d61*, dwf42, d61, OsBRI1, OSBRI1, BRI1, Os BRI1, Osbri1, OsBRKq1, BRKq1,OsRHC1, RHC1, OsLE, TT3.1, OsTT3.1,  OsRING133, RING133, DGS1, OsDGS1,OsUBC45, UBC45, OsSMG3,OsBZR1, Os BZR1, OsBES1-6, BES1-6
53301	36952416	Zhang H., Yu F., Xie P., Sun S., Qiao X., Tang S., Chen C., Yang S., Mei C., Yang D., Wu Y., Xia R., Li X., Lu J., Liu Y., Xie X., Ma D., Xu X., Liang Z., Feng Z., Huang X., Yu H., Liu G., Wang Y., Li J., Zhang Q., Chen C., Ouyang Y., Xie Q.	A G&#x3b3; protein regulates alkaline sensitivity in crops.	Science	379(6638)	eade8416	2023		
53302	36637130	Xu E., Wu M., Liu Y., Tai Y., Zha W., Gong C., Zou Y., Zhang P., Zhang W., Chen X.	The Golgi-localized transporter OsPML3 is involved in manganese homeostasis and complex N-glycan synthesis in rice.	J. Exp. Bot.	74(6)	1853-1872	2023	PML3	OsPML3
53303	36871218	Ma M., Shen S.Y., Bai C., Wang W.Q., Feng X.H., Ying J.Z., Song X.J.	Control of grain size in rice by TGW3 phosphorylation of OsIAA10 through potentiation of OsIAA10-OsARF4-mediated auxin signaling.	Cell Rep	42(3)	112187	2023	TGW3,PHI1,ARF2,TIR1,IAA10,D11,DWARF4,EXPB3,EXPA18,D2	GL3.3, OsSK41, SK41, OsGSK5, GSK5, qTGW3, OsTGW3, OsGSK5/OsSK41, OsSK41/OsGSK5, GL3.3/TGW3,OsPHI1, OsPHI-1, PHI-1,OsARF2, OsARF4, ARF4,OsTIR1, OsFbox248, Fbox248, Os_F071, AFB,  OsFBL21, FBL21,OsIAA10, OsIAA5, DLN71, OsDLN71,d11(d8), dwf10, d8, D11/CYP724B1, d11, CYP724B1, GNS4, OsD11, PMM1, OsPMM1, PMM1/D11, NBG4, OsCPB1, CPB1, CPB1/D11,OsDWARF4, osdwarf4, OsDWF4, DWF4, CYP90B2, OsCYP90B2, D4, OsD4,OsEXPB3, osaEXPb1.10, EXPb1.10,OsEXPA18, OsEXP18, osaEXPa1.3,d2, dwf2, CYP90D2, D2/CYP90D2, OsD2, SMG11, OsSMG11, D2/SMG11, OsD2a, OsD2b
53304	36904036	Vargas J., G&#xf3;mez I., Vidal E.A., Lee C.P., Millar A.H., Jordana X., Roschzttardtz H.	Growth Developmental Defects of Mitochondrial Iron Transporter 1 and 2 Mutants in Arabidopsis in Iron Sufficient Conditions.	Plants (Basel)	12(5)		2023		
53305	36493391	Wang Y., Wu F., Lin Q., Sheng P., Wu Z., Jin X., Chen W., Li S., Luo S., Duan E., Wang J., Ma W., Ren Y., Cheng Z., Zhang X., Lei C., Guo X., Wang H., Zhu S., Wan J.	A regulatory loop establishes the link between the circadian clock and abscisic acid signaling in rice.	Plant Physiol.	191(3)	1857-1870	2023		
53306	36869435	Wang X., Chen Y., Liu S., Fu W., Zhuang Y., Xu J., Lou Y., Baldwin I.T., Li R.	Functional dissection of rice jasmonate receptors involved in development and defense.	New Phytol.	238(5)	2144-2158	2023		
53307	36638269	Yang H., Liu F., Wang W., Rui Q., Li G., Tan X., Ye J., Shen H., Liu Y., Liu W., Tang R., Hu J., Liu K., Zhang Y., Zhan H., Wang Y., Bao Y.	OsTKPR2 is part of a sporopollenin-producing metabolon required for exine formation in rice.	J. Exp. Bot.	74(6)	1911-1925	2023	TKPR2 	OsTKPR2
53308	36973492	Kim S., Huh S.M., Han H.J., Lee G.S., Hwang Y.S., Cho M.H., Kim B.G., Song J.S., Chung J.H., Nam M.H., Ji H., Kim K.H., Yoon I.S.	A rice seed-specific glycine-rich protein OsDOR1 interacts with GID1 to repress GA signaling and regulates seed dormancy.	Plant Mol. Biol.	111(6)	523-539	2023	DOR1 ,GID1,DIP12 ,SLR1	OsDOR1 ,gid1, OsGID1, Thl, Os GID1,OsDIP12 ,slr1-1, slr1, slr, GAI, OsGAI, OsSLR1, Os SLR1, OsRGA1, OsGRAS-18, OsGRAS-18, GRAS-18, GRAS18, SLR-1
53309	36952041	Zhang L., Xu J., Ding Y., Cao N., Gao X., Feng Z., Li K., Cheng B., Zhou L., Ren M., Tao Y., Zou G.	GWAS of grain color and tannin content in Chinese sorghum based on whole-genome sequencing.	Theor. Appl. Genet.	136(4)	77	2023		
53310	36904060	Tong L., Wu W., Lin Y., Chen D., Zeng R., Lu L., Song Y.	Insect Herbivory on Main Stem Enhances Induced Defense of Primary Tillers in Rice (<i>Oryza sativa</i> L.).	Plants (Basel)	12(5)		2023	LOX-L2,AOC,RBBI3-3,AOS1,COI1	OsLOX-L2, LOX1.1, LOX L-2, LOX-2, OsLOX2, LOX2,OsAOC, AOC1, OsAOC1, HB, CPM2, OsAOC4, AOC4,RBBI3-3, OsBBPI, BBPI, IBP1.2, OsIBP1.2, OsBBTI5, BBTI5,OsAOS, OsAOS1, CYP74A1, OsAOS2, AOS2,OsCOI1a, OsCOI1, Os_F0728, COI1a, F0728,  OsFBL4, FBL4
53311	36843251	Xu L., Zhao H., Wang J., Wang X., Jia X., Wang L., Xu Z., Li R., Jiang K., Chen Z., Luo J., Xie X., Yi K.	AIM1-dependent high basal salicylic acid accumulation modulates stomatal aperture in rice.	New Phytol.	238(4)	1420-1430	2023		
53312	36922804	Chen H.C., Huang S.C., Chen Y.F., Kuo C.W., Chen Y.H., Chang M.C.	Overexpression of OsERF106MZ promotes parental root growth in rice seedlings by relieving the ABA-mediated inhibition of root growth under salinity stress conditions.	BMC Plant Biol.	23(1)	144	2023	SPX-MFS1,WRKY76,NPC3,ERF106,AO3,RS2	OsSPX-MFS1,OsWRKY76, OsWRKY76.1, OsWRKY76.2, OsWRKY76.3,OsNPC4, OsNPC3, NPC4,DERF7, OsDERF7, OsERF#106, OsERF106, AP2/EREBP#111, AP2/EREBP111, OsERF106MZ, ERF106MZ,AO, OsAO, AAO, OsAAO, OsAO3, OsAAO1, AAO1,OsMYB91, MYB91, OsRS2, OsMYB125, MYB125 
53313	37047228	Mei W., Chen W., Wang Y., Liu Z., Dong Y., Zhang G., Deng H., Liu X., Lu X., Wang F., Chen G., Tang W., Xiao Y.	Exogenous Kinetin Modulates ROS Homeostasis to Affect heat tolerance in Rice Seedlings.	Int J Mol Sci	24(7)		2023	RR6,HSP90,HSFA2D,RR2,LEA3-1,APX1,CATB,ONAC2,SODB,ISC24,DREB2A	OsRR6, rr6, Rra6, OsRRA6,OsHsp90, rHSP90, OsHSP90, GRP94, OsGRP94,HSfA2d, OsHsfA2d, OsHsf-08, rHsf7, HSF08, OsHSF8, HSF8, HSF7, OsHSF7, OsHSFA2dI, OsHSFA2dII, OsHSFA2dIII, OsHsfA6b, HsfA6b, OsHsf2d, Hsf2d,rr2, Osrr2, OsRR2, Rra10, OsRRA10,OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3, OsLEA3A, LEA3A,OsAPX1, APXa, OsAPXa, OsAPx01, OsAPx1, OSAPX1, APx1, cAPX, APX2, cAPXa, OscAPXa,CatB, CAT-B, OsCatB, OsCATB, OsCAT1B, CAT1B, CAT2, OsCAT2,SNAC1, snac1, OsNAC9, ONAC002, ONAC2, ONAC033, ONAC33, ONAC043, ONAC43, ONAC044, ONAC44, OsNAC19, NAC19, SNAC1/ONAC002, OsSNAC1, OsNAC9, OsNAC1,SodB, Fe-SOD, Fe- SOD, OsFe-SOD, Fe+-SOD, OsFe+-SOD, OsFe-SODa, OsFe-SODb, OsFeSODb, FeSODb, OsFSD1.2, FSD1.2, FeSOD2, OsFSD2, FSD2, OsFSD1, FSD1, ALM1, OsALM1,OsISC24, HSP70, OsHSP70,OsDREB2A, OsDREB2a, ERF40, OsERF#040, OsERF040, OsERF40, AP2/EREBP#167, AP2/EREBP167
53314	36912929	Zhan C., Zhu P., Chen Y., Chen X., Liu K., Chen S., Hu J., He Y., Xie T., Luo S., Yang Z., Chen S., Tang H., Zhang H., Cheng J.	Identification of a key locus, qNL3.1, associated with seed germination under salt stress via a genome-wide association study in rice.	Theor. Appl. Genet.	136(3)	58	2023	SAPK1,TTL	OsSAPK1, OsSnRK2.1, SnRK2.1,OsTTL
53315	36906910	Jin X., Zhang Y., Li X., Huang J.	OsNF-YA3 regulates plant growth and osmotic stress tolerance by interacting with SLR1 and SAPK9 in rice.	Plant J.	114(4)	914-933	2023		
53316	36942934	Jung H., Park H.J., Jo S.H., Lee A., Lee H.J., Kim H.S., Jung C., Cho H.S.	Nuclear OsFKBP20-1b maintains SR34 stability and promotes the splicing of retained introns upon ABA exposure in rice.	New Phytol.	238(6)	2476-2494	2023	HCI1,CIPK33,GUN4,GPX4,SR45,HAP2D,WRKY55,BIP1,PRPS2,NOE1,FKBP20-1B,SGRL,MIOX,SRP33A,APX8,BURP16	OsHCI1, E3UL, OsRING206, RING206,OsCIPK33, OsSnRK3.32, SnRK3.32,OsGUN4,OsGpx4, GPX4, OsGPx04, OsGPX4,OsSR45,OsHAP2D, NF-YA, CBF-B, NF-YA4, OsNF-YA4, NFYA4,OsWRKY55,OsBiP1, BiP1, BiP, Bip3, OsBiP3, BIP1/OsBIP3, OsMed37_2, Med37_2 ,OsPRPS2,CATC, OsCat, OsCatC, OsCATC, OsNOE1, noe1, catC, OsCATC, CAT3, OsCAT3, LLM9428, OsLLM9428,OsFKBP20-1b,OsSGRL,OsMIOX,Os-SR33a, OsSR33a, SR33a, OsSRp33a, Os-SRp33a, OsSR34, SR34,OsAPx8, OsAPx08, OSAPX8, APx8, OsAPX8,OsRD22, RD22, OsBURP16
53317	36988217	Du F., Wang Y., Wang J., Li Y., Zhang Y., Zhao X., Xu J., Li Z., Zhao T., Wang W., Fu B.	The basic helix-loop-helix transcription factor gene, OsbHLH38, plays a key role in controlling rice salt tolerance.	J Integr Plant Biol			2023	PROT1,ABCG29,HAK5,LCS,_,PROT3,ABCG30,SKC1,ABI5,PDR12,JMT1,BHLH38,SWEET3A,HKT6,DREB2A,RBLS2,PIN5A	OsProT1, ProT1 ,OsABCG29,OsHAK5, FCO13, OsFCO13,OsHAK1, HAK1,OsPOT, POT, OsIROPT1, IROPT1,OsProT3, ProT3,OsABCG30,OsHKT8, HKT8, Os-HKT1;5, OsHKT1;5, HKT1;5, SKC1, qSKC-1(t), OsSKC1,OsABI5, OsbZIP10, OsABF1, OREB1, OsABI5-1, OsABI5-2, OsOREB1, OREB1 ,OsABCG42, ABCG42, OsPDR12, OsABCG42_1, OsABCG42_2,OsJMT1, JAMT1, OsJAMT1,OsbHLH038, bHLH038, OsbHLH38,OsSWEET3a, SWEET3a,OsHKT6, OsHKT1;3, HKT1;3, OsHKT1;3_FL, OsHKT1;3_V1, OsHKT1;3_V2, OsHKT1;3_V3, OsHKT1;3_V4, OsHKT1;3_V5,OsDREB2A, OsDREB2a, ERF40, OsERF#040, OsERF040, OsERF40, AP2/EREBP#167, AP2/EREBP167,ASR1, OsAsr1, OsASR3, ASR3, Asr3, OsRBLS2,OsPIN5a, OsPIN6
53318	36987089	Kim T.H., Kim S.M.	Identification of Candidate Genes for salt tolerance at the Seedling Stage Using Integrated Genome-Wide Association Study and Transcriptome Analysis in Rice.	Plants (Basel)	12(6)		2023	_,MYB48,PRX20,AK-HSDH2,ASR2,MTI2B,PCL1	,OsMYB48, OsMYB48-1, OsMYB48-2, OsMYB59, MYB59, Os2R_MYB19, 2R_MYB19 ,prx20, OsPRX20,OsAK-HSDH2,OsAsr2, OsASR4, ASR4, OsASR6, ASR6,OsMT2c, OsMT-I-2b, MT2c, MT-I-2b, MTc, met5, ricMT, OsMT2,OsPCL1, OsLUX, LUX, OsLVP2, LVP2
53319	36982973	Chatterjee Y., Bhowal B., Gupta K.J., Pareek A., Singla-Pareek SL.	Lactate Dehydrogenase Superfamily in Rice and <i>Arabidopsis</i>: Understanding the Molecular Evolution and Structural Diversity.	Int J Mol Sci	24(6)		2023	MDH6.1,MDH1,MDH12.1,MDH5.1,MDH4.1,MDH8.1,MMDH,MDH8.2,MDH7.1,LDH,FLO16	OsMDH6.1, OsLdh7, Ldh7,OsMDH1, OsLdh2, Ldh2,OsMDH12.1, OsLdh12, Ldh12,OsMDH5.1, OsLdh6, Ldh6,OsMDH4.1, OsLdh5, Ldh5,MDH, OsMDH8.1, OsLdh9, Ldh9,OsmMDH, mMDH, OsMDH1.2, MDH1.2, OsLdh1, Ldh1,OsMDH8.2, OsLdh10, Ldh10,OsMDH7.1, OsLdh8, Ldh8,OsLDH, OsMDH2.1, MDH2.1, OsLdh3, Ldh3,CMDH, OscMDH, cMDH, OsMDH, MDH, OsFLO16, OsMDH10.1, MDH10.1, OsLdh11, Ldh11
53320	36982409	Kim M.S., Ko S.R., Jung Y.J., Kang K.K., Lee Y.J., Cho Y.G.	Knockout Mutants of <i>OsPUB7</i> Generated Using CRISPR/Cas9 Revealed Abiotic Stress Tolerance in Rice.	Int J Mol Sci	24(6)		2023	PUB44,PUB7,PUB24,RLCK93,PUB73,PUB58,PUB66,PUB23,PUB46,PUB67	OsPUB44,OsPUB7, OsPUB07, PUB07,OsPUB24,OsPUB50, PUB50, OsRLCK93,OsPUB73,OsPUB58,OsPUB66,OsPUB23,OsPUB46,OsPUB67
53321	36867203	Szaba&#x142;a BM.	A bifunctional selectable marker for wheat transformation contributes to the characterization of male-sterile phenotype induced by a synthetic Ms2 gene.	Plant Cell Rep.	42(5)	895-907	2023		
53322	36986987	Niyoifasha C.J., Borena B.M., Ukob I.T., Minh P.N., Al Azzawi TNI., Imran M., Ali S., Inthavong A., Mun B.G., Lee I.J., Khan M., Yun B.W.	Alleviation of Hg-, Cr-, Cu-, and Zn-Induced Heavy Metals Stress by Exogenous Sodium Nitroprusside in Rice Plants.	Plants (Basel)	12(6)		2023	MTI1A,MTI1B,MTP11,PCS1,PCS5	MT1a, OsMT1a, OsMT1e, OsMT-I-1a, MT-I-1a, OsMT1e-P, MTa, rgMT, OsMT-1, rgMT-1,OsMT1b, MT1b, OsMT-I-1b, OsMTI-1b, MT-I-1b, MTI-1b, MT1La, OsMT1La, OsMT1,OsMTP11, OsMTP5, MTP5,OsPCS1, OsPCS2, PCS2, OsPCS15, PCS15,OsPCS, PCS, OsPCS2, PCS2, OsPCS2a, PCS2a, OsPCS2b, PCS2b, OsPCS1, PCS1, OsPCS1a, OsPCS1b, OsPCS1c, OsPCS1full, OsPCS5
53323	36516424	Li K., Tang S., Zhang S., Tian Y., Qu H., Gu M., Xu G.	Rice circadian clock regulator nhd1 controls the expression of the sucrose transporter gene OsSUT1 and impacts carbon-nitrogen balance.	J. Exp. Bot.	74(5)	1460-1474	2023		
53324	36850039	Xiong S., Kong X., Chen G., Tian L., Qian D., Zhu Z., Qu L.Q.	Metallochaperone OsHIPP9 is involved in the retention of cadmium and copper in rice.	Plant Cell Environ.	46(6)	1946-1961	2023		
53325	36926693	Wang N., Deng Y., Zhang L., Wan Y., Lei T., Yang Y., Wu C., Du H., Feng P., Yin W., He G.	UDP-glucose epimerase 1, moonlighting as a transcriptional activator, is essential for tapetum degradation and male fertility in rice.	Mol Plant	16(5)	829-848	2023		
53326	36952142	Deng P., Cao C., Shi X., Jiang Q., Ge J., Shen L., Guo C., Jiang L., Jing W., Zhang W.	OsCYBDOMG1, a cytochrome b561 domain-containing protein, regulates salt tolerance and grain yield in rice.	Theor. Appl. Genet.	136(4)	76	2023	RSS5	OsRSS5, OsCYBDOMG1, CYBDOMG1
53327	36952539	Dai Y.S., Liu D., Guo W., Liu Z.X., Zhang X., Shi L.L., Zhou D.M., Wang L.N., Kang K., Wang F.Z., Zhao S.S., Tan Y.F., Hu T., Chen W., Li P., Zhou Q.M., Yuan L.Y., Zhang Z., Chen Y.Q., Zhang W.Q., Li J., Yu L.J., Xiao S.	Poaceae-specific &#x3b2;-1,3;1,4-d-glucans link jasmonate signalling to OsLecRK1-mediated defence response during rice-brown planthopper interactions.	Plant Biotechnol. J.	21(6)	1286-1300	2023	ARID5,CSLF4,ARID2,ARID4,SIP5,ARID1,COI1,CSLF1,CSLF7,RLCK135,CSLF9,ARID6,BHLH9,BPH15,CSLF2,CSLF6,CSLF8,LOX1,COI1B	OsARID5,OsCslF4, OsCSLF4 ,OsSTA71, OsARID,OsARID4,OsARID3, ARID3, OsSIP5 ,OsARID1,OsCOI1a, OsCOI1, Os_F0728, COI1a, F0728,  OsFBL4, FBL4,OsCslF1, OsCSLF1 ,OsCslF7, OsCSLF7 ,OsRLCK135, OsLecRK3, LecRK3, SDRLK-LecRK3, OsSDRLK-LecRK3,OsCslF9, OsCSLF9,OsARID6,OsbHLH009, bHLH009, OsMYC2, MYC2,RLCK134, OsRLCK134, OsLecRK1, LecRK1, SDRLK-LecRK1, OsSDRLK-LecRK1, OslecRK, lecRK, Bph15, OsBph15, Bph15 (Qbp2), Qbp2, qBPH-4,OsCslF2, OsCSLF2,OsCslF6, OsCSLF6, OsCLD3, CLD3,OsCslF8, OsCSLF8,OsLOX1, OsLOX5, OsLOX2, LOX2,OsCOI1b, COI1b, OsCOI1H, COI1H, OsFbox260, Fbox260, Os_F0646,  OsFBL23, FBL23, OsCOl-1, COl-1
53328	37220540	Zhao L., Oyagbenro R., Feng Y., Xu M., Peters R.J.	Oryzalexin S biosynthesis: a cross-stitched disappearing pathway.	Abiotech	4(1)	1-7	2023	CYP71Z22,KS8,CYP99A2,CYP71Z21 ,CYP99A3	OsCYP71Z22,OsKS8, KS8, KSL8, OsKSL8, DTC2, OsDTC2, OsDTC2/OsKS8, OsTPS32, TPS17, OsTPS17, KSL11, OsKSL11,OsCYP99A2,OsCYP71Z21 ,OsCYP99A3
53329	36952116	Zhao L., Liu H., Peng K., Huang X.	Cold-Upregulated Glycosyltransferase Gene 1 (OsCUGT1) plays important roles in rice height and spikelet fertility.	J. Plant Res.	136(3)	383-396	2023	CUGT1	OsCUGT1
53330	36982696	Qiu F., Zheng Y., Lin Y., Woldegiorgis S.T., Xu S., Feng C., Huang G., Shen H., Xu Y., Kabore M.A.F., Ai Y., Liu W., He H.	Integrated ATAC-Seq and RNA-Seq Data Analysis to Reveal <i>OsbZIP14</i> Function in Rice in Response to Heat Stress.	Int J Mol Sci	24(6)		2023	BZIP14,HSFA2D,DLN254,RISBZ1	OsbZIP14,HSfA2d, OsHsfA2d, OsHsf-08, rHsf7, HSF08, OsHSF8, HSF8, HSF7, OsHSF7, OsHSFA2dI, OsHSFA2dII, OsHSFA2dIII, OsHsfA6b, HsfA6b, OsHsf2d, Hsf2d,R2R3-MYB, OsDLN254, OsMYB2, Os2R_MYB94, 2R_MYB94,OsbZIP58, bZIP58, OsEnS-92, OsSMF1, SMF1, OsRISBZ1, RISBZ1/bZIP58
53331	36948404	Lin Y., Zhu Y., Wang L., Zheng Y., Xie Y., Cai Q., He W., Xie H., Liu H., Wang Y., Cui L., Wei Y., Xie H., Zhang J.	Overexpression of a GIPC glycosyltransferase gene, OsGMT1, suppresses plant immunity and delays heading time in rice.	Plant Sci.	331	111674	2023		
53332	36964129	Guo T., Lu Z.Q., Xiong Y., Shan J.X., Ye W.W., Dong N.Q., Kan Y., Yang Y.B., Zhao H.Y., Yu H.X., Guo S.Q., Lei J.J., Liao B., Chai J., Lin H.X.	Optimization of rice panicle architecture by specifically suppressing ligand-receptor pairs.	Nat Commun	14(1)	1640	2023	DSG1,TAC3,EPFL6,SMG2,SMG1,STOMAGEN,EPFL9,EPFL8,_,EPFL7,RLCK204,EPF1,EPFL5,EPFL4,RAE2 ,EPFL2	OsMAPK6, MAPK6, OsMPK6, OsSIPK, SIPK, OsMAPK1, MAPK1, MPK1, OsMPK1, MPK6, OsDSG1,OsTAC3, OsEPFL3, EPFL3,OsEPFL6,YDA1, OsMKKK10, MKKK10, SMG2/OsMKKK10, OsSMG2, OsMAPKKK10, MAPKKK10,OsMKK4, MKK4, OsMKK4/SMG1, OsMAPKK4, MAPKK4, OsMEK4, MEK4, OsSMG1, SMG1/OsMEK6, OsMEK6, MEK6, OsSTS, STS,OsSTOMAGEN, OsEPFL9, EPFL9, OsEPFL10, EPFL10,OsEPFL9,OsEPFL8,OsEPF1, EPF1,OsEPFL7,OsRLCK204, OsER1, ER1,OsEPF1, OsEPF2, EPF2,OsEPFL5,OsEPFL4,OsEPFL1, EPFL1, GAD1, OsGAD1, OsRAE2, GLA, OsGLA, GAD1/RAE2, OgRAE2,OsEPFL2
53333	36894598	Xue C., Qiu F., Wang Y., Li B., Zhao K.T., Chen K., Gao C.	Tuning plant phenotypes by precise, graded downregulation of gene expression.	Nat. Biotechnol.			2023		
53334	36478231	Wang H., Lu H., Yang Z., Zhang Z., Li M., Zhang Z., Dai W., Song X., Olsen K.M., Qiang S.	Characterization of lodging variation of weedy rice.	J. Exp. Bot.	74(5)	1403-1419	2023		
53335	37047459	Li G., Yao X., Chen Z., Tian X., Lu L.	The Overexpression of <i>Oryza sativa</i> L. <i>CYP85A1</i> Promotes Growth and Biomass Production in Transgenic Trees.	Int J Mol Sci	24(7)		2023	BRD1	brd1, OsDWARF, DWARF, OsBR6ox, BR6ox, CYP85A1, CYP85A4, OsDWF, CYP85A1/OsDWARF, OsBRD1, OsCYP85A1
53336	37445885	Barik S.R., Moharana A., Pandit E., Behera A., Mishra A., Mohanty S.P., Mohapatra S., Sanghamitra P., Meher J., Pani D.R., Bhadana V.P., Datt S., Sahoo C.R., Raj K R R., Pradhan S.K.	Transfer of Stress Resilient QTLs and Panicle Traits into the Rice Variety, Reeta through Classical and Marker-Assisted Breeding Approaches.	Int J Mol Sci	24(13)		2023		
53337	37426975	Shi S., Zha W., Yu X., Wu Y., Li S., Xu H., Li P., Li C., Liu K., Chen J., Yang G., Chen Z., Wu B., Wan B., Liu K., Zhou L., You A.	Integrated transcriptomics and metabolomics analysis provide insight into the resistance response of rice against brown planthopper.	Front Plant Sci	14	1213257	2023		
53338	37349987	Xu H., Wang H., Zhang Y., Yang X., Lv S., Hou D., Mo C., Wassie M., Yu B., Hu T.	A synthetic light-inducible photorespiratory bypass enhances photosynthesis to improve rice growth and grain yield.	Plant Commun		100641	2023		
53339	37447069	Khan S., Ibrar D., Hasnain Z., Nawaz M., Rais A., Ullah S., Gul S., Siddiqui M.H., Irshad S.	Moringa Leaf Extract Mitigates the Adverse Impacts of Drought and Improves the Yield and Grain Quality of Rice through Enhanced Physiological, Biochemical, and Antioxidant Activities.	Plants (Basel)	12(13)		2023		
53340	37378818	Wang X., Niu S., Yang J., Dong Y., Liu X., Jiao Y., Wang Z.	Effects of stacking breeding on the methylome and transcriptome profile of transgenic rice with glyphosate tolerance.	Planta	258(2)	34	2023		
53341	37445819	Li Q., Zhang C., Wen J., Chen L., Shi Y., Yang Q., Li D.	Transcriptome Analyses Show Changes in Gene Expression Triggered by a 31-bp InDel within <i>OsSUT3</i> 5'UTR in Rice Panicle.	Int J Mol Sci	24(13)		2023		
53342	37373512	Do V.G., Lee Y., Kim S., Yang S., Park J., Do G.	Introducing <i>MdTFL1</i> Promotes heading date and Produces Semi-Draft Phenotype in Rice.	Int J Mol Sci	24(12)		2023		
53343	37337668	Schepler-Luu V., Sciallano C., Stiebner M., Ji C., Boulard G., Diallo A., Auguy F., Char S.N., Arra Y., Schenstnyi K., Buchholzer M., Loo E.P.I., Bilaro A.L., Lihepanyama D., Mkuya M., Murori R., Oliva R., Cunnac S., Yang B., Szurek B., Frommer W.B.	Genome editing of an African elite rice variety confers resistance against endemic and emerging <i>Xanthomonas oryzae</i> pv. <i>oryzae</i> strains.	Elife	12		2023		
53344	37409302	Chen J., Hao S., Ba&#xf1;uelos G., Zhou X.	A quantitative review of the effects of Se application on the reduction of Hg concentration in plant: a meta-analysis.	Front Plant Sci	14	1199721	2023		
53345	37393859	Jiang D., Xu H., Zhang Y., Chen G.	Silicon mediated redox homeostasis in the root-apex transition zone of rice plays a key role in aluminum tolerance.	Plant Physiol. Biochem.	201	107871	2023		
53346	37330100	Lin Y., Gu H., Jia X., Wang W., Hong B., Zhang F., Yin H.	Rhizoctonia solani AG1 IA extracellular polysaccharides: Structural characterization and induced resistance to rice sheath blight.	Int. J. Biol. Macromol.	244	125281	2023		
53347	37318700	Ho U.H., Song S.R., Choe Y.I., Pak M.H., Kim M.H., Kim K., Ho T.S.	Development of Agrobacterium-mediated in planta transformation protocol through coleoptile in rice.	Transgenic Res.			2023		
53348	37277331	Xu Q., Yue Y., Liu B., Chen Z., Ma X., Wang J., Zhao Y., Zhou D.X.	ACL and HAT1 form a nuclear module to acetylate histone H4K5 and promote cell proliferation.	Nat Commun	14(1)	3265	2023		
53349	37445924	Ma S., Zhong Y., Zheng S., He Y., Yang S., Wang L., Traw M.B., Zhang Q., Zhang X.	Rapid Identification by Resequencing-Based QTL Mapping of a Novel Allele <i>RGA1-FH</i> Decreasing Grain Length in a Rice Restorer Line 'Fuhui212'.	Int J Mol Sci	24(13)		2023		
53350	37294528	Nakamura Y.	A model for the reproduction of amylopectin cluster by coordinated actions of starch branching enzyme isoforms.	Plant Mol. Biol.	112(4-5)	199-212	2023		
53351	37445669	Zhu X., Wei Q., Wan P., Wang W., Lai F., He J., Fu Q.	Effect of Paclobutrazol Application on Enhancing the Efficacy of Nitenpyram against the Brown Planthopper, <i>Nilaparvata lugens</i>.	Int J Mol Sci	24(13)		2023		
53352	37036744	Qi J., Yang S., Salam A., Yang C., Khan A.R., Wu J., Azhar W., Gan Y.	OsRbohI Regulates Rice Growth and Development via Jasmonic Acid Signalling.	Plant Cell Physiol.	64(6)	686-699	2023		
53353	37374103	Lu L., Wang Q., Shi Z., Li C., Guo Z., Li J.	Emergence of Rice Blast <i>AVR-Pi9</i> Resistance Breaking Haplotypes in Yunnan Province, China.	Life (Basel)	13(6)		2023		
53354	37267255	Lee C., Lee Y.S., Hong H.C., Hong W.J., Koh H.J., Jung K.H.	Reinterpretation of anthocyanins biosynthesis in developing black rice seeds through gene expression analysis.	PLoS ONE	18(6)	e0286539	2023		
53355	37441387	Mondal S., Kumar R., Mishra J.S., Dass A., Kumar S., Vijay K.V., Kumari M., Khan S.R., Singh V.K.	Grain nitrogen content and productivity of rice and maize under variable doses of fertilizer nitrogen.	Heliyon	9(6)	e17321	2023		
53356	37270542	Kuanar S.R., Sarkar R.K., Panigrahi R., Mohapatra P.K.	Introgression of Sub1 aggravates the susceptibility of the popular rice cultivars Swarna and Savitri to stagnant flooding.	Sci Rep	13(1)	9032	2023		
53357	37360733	Kuya N., Nishijima R., Kitomi Y., Kawakatsu T., Uga Y.	Transcriptome profiles of rice roots under simulated microgravity conditions and following gravistimulation.	Front Plant Sci	14	1193042	2023		
53358	37284992	He S., Liang S., Meng L., Cao L., Ye G.	Sparse Phenotyping and Haplotype-Based Models for Genomic Prediction in Rice.	Rice (N Y)	16(1)	27	2023		
53359	37285677	Imran M., Hussain S., Iqbal A., Saleem M.H., Rehman N.U., Mo Z., Chen X., Tang X.	Nitric oxide confers cadmium tolerance in fragrant rice by modulating physio-biochemical processes, yield attributes, and grain quality traits.	Ecotoxicol. Environ. Saf.	261	115078	2023		
53360	37520805	Kumari M., Kapoor R., Devanna B.N., Varshney S., Kamboj R., Rai A.K., Sharma T.R.	iTRAQ based proteomic analysis of rice lines having single or stacked blast resistance genes: <i>Pi54</i>/<i>Pi54rh</i> during incompatible interaction with <i>Magnaporthe oryzae</i>.	Physiol Mol Biol Plants	29(6)	871-887	2023		
53361	37399697	Wu X., Wang Z., Liu X., Gao Z., Li Z.	Constitutive expression of nucleotide-binding and leucine-rich repeat gene AtRPS2 enhanced drought and salt tolerance in rice.	J. Plant Physiol.	287	154048	2023		
53362	37381632	Shen L., Fan W., Li N., Wu Q., Chen D., Luan J., Zhang G., Tian Q., Jing W., Zhang Q., Zhang W.	Rice potassium transporter OsHAK18 mediates phloem K+ loading and redistribution.	Plant J.			2023		
53363	37290549	Sharma A., Samtani H., Sahu K., Sharma A.K., Khurana J.P., Khurana P.	Functions of Phytochrome-Interacting Factors (PIFs) in the regulation of plant growth and development: A comprehensive review.	Int. J. Biol. Macromol.	244	125234	2023		
53364	37343319	Yuan P., Li Z., Chen H., Li S., Xuan Y.H., Ma D.	bZIP23 interacts with NAC028 to modulate rice resistance to sheath blight disease.	Biochem. Biophys. Res. Commun.	672	89-96	2023		
53365	37340997	Xiong D., Wang R., Wang Y., Li Y., Sun G., Yao S.	SLG2 specifically regulates grain width through WOX11-mediated cell expansion control in rice.	Plant Biotechnol. J.			2023	EXPA1,GW8,EXPA26,EXPA5,EXPA4,EXPB7,WD40-169,WOX11,SLG2	OsEXP1, EXPA1, OsEXPA1, OsaEXPa1.16, RiExA,SPL16, OsSPL16, SLP1, OsSLP1, qGW8, OsGW8,EXPA26, OsEXP26, osaEXPa1.29,OsEXPA5, OsEXP5, osaEXPa1.20,OsEXP4 (Os-EXP4), OsEXPA4, OsEXP4, Os-EXP4, OsaEXPa1.22,OsEXPB7, osaEXPb1.12,OsWD40-169,  OsDWD59, DWD59, HSLG2, OsHSLG2,OsWOX11, Os WOX11, OsWOX12A,OsWD40-40, WD40-40, OsDWD60, DWD60, OsSLG2
53366	37341542	Hoang T.V., Vo K.T.X., Rahman M.M., Zhong R., Lee C., Ketudat Cairns JR., Ye Z.H., Jeon J.S.	SPOTTED-LEAF7 targets the gene encoding &#x3b2;-Galactosidase9, which functions in rice growth and stress responses.	Plant Physiol.			2023		
53367	37512850	Iwai R., Uchida S., Yamaguchi S., Nagata D., Koga A., Hayashi S., Yamamoto S., Miyasaka H.	Effects of LPS from <i>Rhodobacter sphaeroides</i>, a Purple Non-Sulfur Bacterium (PNSB), on the Gene Expression of Rice Root.	Microorganisms	11(7)		2023		
53368	37373546	Kanda Y., Shinya T., Maeda S., Mujiono K., Hojo Y., Tomita K., Okada K., Kamakura T., Galis I., Mori M.	BSR1, a Rice Receptor-like Cytoplasmic Kinase, Positively Regulates Defense Responses to Herbivory.	Int J Mol Sci	24(12)		2023		
53369	37404541	Zha W., Li C., Wu Y., Chen J., Li S., Sun M., Wu B., Shi S., Liu K., Xu H., Li P., Liu K., Yang G., Chen Z., Xu D., Zhou L., You A.	Single-Cell RNA sequencing of leaf sheath cells reveals the mechanism of rice resistance to brown planthopper (<i>Nilaparvata lugens</i>).	Front Plant Sci	14	1200014	2023		
53370	37424731	Banakar S.N., Prasannakumar M.K., Parivallal P.B., Pramesh D., Mahesh H.B., Sarangi A.N., Puneeth M.E., Patil S.S.	Rice-<i>Magnaporthe</i> transcriptomics reveals host defense activation induced by red seaweed-biostimulant in rice plants.	Front Genet	14	1132561	2023		
53371	36964899	Li J., Zhang C., Luo X., Zhang T., Zhang X., Liu P., Yang W., Lei Y., Tang S., Kang L., Huang L., Li T., Wang Y., Chen W., Yuan H., Qin P., Li S., Ma B., Tu B.	Fine mapping of the grain chalkiness quantitative trait locus qCGP6 reveals the involvement of Wx in grain chalkiness formation.	J. Exp. Bot.	74(12)	3544-3559	2023		
53372	36919203	Tang Y., Zhang Z., Yang Z., Wu J.	CRISPR/Cas9 and Agrobacterium tumefaciens virulence proteins synergistically increase efficiency of precise genome editing via homology directed repair in plants.	J. Exp. Bot.	74(12)	3518-3530	2023		
53373	37384363	Kawaguchi R., Suriyasak C., Matsumoto R., Sawada Y., Sakai Y., Hamaoka N., Sasaki K., Yamane K., Kato Y., Bailly C., Ishibashi Y.	Regulation of reactive oxygen species and phytohormones in osmotic stress tolerance during seed germination in <i>indica</i> rice.	Front Plant Sci	14	1186960	2023		
53374	37447057	Cheng Q., Huang S., Lin L., Zhong Q., Huang T., He H., Bian J.	Genetic Analysis for the flag leaf Heterosis of a Super-Hybrid Rice WFYT025 Combination Using RNA-Seq.	Plants (Basel)	12(13)		2023		
53375	37299185	Singh L., Pruthi R., Chapagain S., Subudhi P.K.	Genome-Wide Association Study Identified Candidate Genes for Alkalinity Tolerance in Rice.	Plants (Basel)	12(11)		2023		
53376	37449133	John R., Bollinedi H., Jeyaseelan C., Padhi S.R., Sajwan N., Nath D., Singh R., Ahlawat S.P., Bhardwaj R., Rana J.C.	Mining nutri-dense accessions from rice landraces of Assam, India.	Heliyon	9(7)	e17524	2023		
53377	37330832	Huang S., Zhang D., Wang Q., Shang B., Liu J., Xing X., Hong Y., Duan X., Sun H.	Shotgun lipidomics reveals the changes in phospholipids of brown rice during accelerated aging.	Food Res. Int.	171	113073	2023		
53378	37331074	Dey S., Nath S., Alam Ansari T., Biswas A., Barman F., Mukherjee S., Gopal G., Bhattacharyya A., Mukherjee A., Kundu R., Paul S.	Application of green synthesized bimetallic nZVI-Cu nanoparticle as a sustainable alternative to chemical fertilizers to enhance growth and photosynthetic efficiency of rice seedlings.	Plant Physiol. Biochem.	201	107837	2023		
53379	37363145	Zhou Q., Guo W., Chen N., Wang Z., Li G., Ding Y., Ninomiya S., Mu Y.	Analyzing Nitrogen Effects on Rice Panicle Development by Panicle Detection and Time-Series Tracking.	Plant Phenomics	5	0048	2023		
53380	37367921	Iqbal A., Mo Z., Pan S.G., Qi J.Y., Hua T., Imran M., Duan M., Gu Q., Yao X.B., Tang X.	Exogenous TiO2 Nanoparticles Alleviate Cd Toxicity by Reducing Cd Uptake and Regulating Plant Physiological Activity and Antioxidant Defense Systems in Rice (<i>Oryza sativa</i> L.).	Metabolites	13(6)		2023		
53381	37286636	Tamotsu H., Koizumi K., Briones A.V., Komiya R.	Spatial distribution of three ARGONAUTEs regulates the anther phasiRNA pathway.	Nat Commun	14(1)	3333	2023		
53382	37285314	Mineri L., Cerise M., Giaume F., Vicentini G., Martignago D., Chiara M., Galbiati F., Spada A., Horner D., Fornara F., Brambilla V.	Rice florigens control a common set of genes at the shoot apical meristem including the F-BOX BROADER tiller angle 1 that regulates tiller angle and spikelet development.	Plant J.			2023	BRT1,RFT1,HD3A	OsFbox189, Os_F0133,  OsFBX125, FBX125, OsBRT1,FT-L 3, OsFTL3, FTL3, FT-L3, RFT, OsRFT1,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a 
53383	37370537	Shi L., Liu F., Peng L.	Impact of Red Imported Fire Ant Nest-Building on Soil Properties and Bacterial Communities in Different Habitats.	Animals (Basel)	13(12)		2023		
53384	37366232	Ning M., Liu S.J., Deng F., Huang L., Li H., Che J., Yamaji N., Hu F., Lei G.J.	A vacuolar transporter plays important roles in zinc and cadmium accumulation in rice grain.	New Phytol.			2023		
53385	37052949	Sakai T., Fujioka T., Uemura T., Saito S., Terauchi R., Abe A.	Whole-genome analysis of recombinant inbred rice lines reveals a quantitative trait locus on chromosome 3 with genotype-by-environment interaction effects.	G3 (Bethesda)	13(6)		2023		
53386	37298706	Kulkova I., Dobrzy&#x144;ski J., Kowalczyk P., Be&#x142;&#x17c;ecki G., Kramkowski K.	Plant Growth Promotion Using <i>Bacillus cereus</i>.	Int J Mol Sci	24(11)		2023		
53387	37362923	Shan S., Wei Z., Cheng W., Du D., Zheng D., Ma G.	Biofertilizer based on halotolerant microorganisms promotes the growth of rice plants and alleviates the effects of saline stress.	Front Microbiol	14	1165631	2023		
53388	37314604	Kaldate R., Verma R.K., Chetia S.K., Dey P.C., Mahalle M.D., Singh S.K., Baruah A.R., Modi M.K.	Mapping of QTLs associated with yield and related traits under reproductive stage drought stress in rice using SNP linkage map.	Mol. Biol. Rep.	50(8)	6349-6359	2023		
53389	37332711	Ye Z., Tan X., Dai M., Lin Y., Chen X., Nie P., Ruan Y., Kong D.	Estimation of rice seedling growth traits with an end-to-end multi-objective deep learning framework.	Front Plant Sci	14	1165552	2023		
53390	37363729	Redd P.S., Payero L., Gilbert D.M., Page C.A., King R., McAssey E.V., Bodie D., Diaz S., Hancock C.N.	Transposase expression, element abundance, element size, and DNA repair determine the mobility and heritability of <i>PIF</i>/<i>Pong</i>/<i>Harbinger</i> transposable elements.	Front Cell Dev Biol	11	1184046	2023		
53391	37375909	Ji J., Lin S., Xin X., Li Y., He J., Xu X., Zhao Y., Su G., Lu X., Yin G.	Effects of OsAOX1a Deficiency on Mitochondrial Metabolism at Critical Node of seed viability in Rice.	Plants (Basel)	12(12)		2023		
53392	37226877	Hashizume H., Kitano H., Mizuno H., Abe A., Yuasa G., Tohno S., Tanaka H., Ishikawa K., Matsumoto S., Sakakibara H., Hirosue Y., Maeshima M., Mizuno M., Hori M.	Efficacy of periodic cold plasma treatment in a paddy to produce white-core grains in brewer's rice cultivar Yamadanishiki.	Free Radic. Res.	57(3)	161-173	2023		
53393	37315011	Li Y., Zhou H., Feng N., Zheng D., Ma G., Feng S., Liu M., Yu M., Huang X., Huang A.	Physiological and transcriptome analysis reveals that prohexadione-calcium promotes rice seedling's development under salt stress by regulating antioxidant processes and photosynthesis.	PLoS ONE	18(6)	e0286505	2023		
53394	37332718	Qin X., Li X., Li C., Li Y., Wu Q., Wen H., Jiang D., Tang T., Nan W., Liang Y., Zhang H.	Genome-wide identification of nitrate-responsive microRNAs by small RNA sequencing in the rice restorer cultivar Nanhui 511.	Front Plant Sci	14	1198809	2023		
53395	37376803	Qing D., Chen W., Huang S., Li J., Pan Y., Zhou W., Liang Q., Yuan J., Gan D., Chen L., Chen L., Huang J., Zhou Y., Dai G., Deng G.	Editing of rice (Oryza sativa L.) OsMKK3 gene using CRISPR/Cas9 decreases grain length by modulating the expression of photosystem components.	Proteomics		e2200538	2023		
53396	37360728	Zhao M., Du C., Zeng J., Gao Z., Zhu Y., Wang J., Zhang Y., Zhu Z., Wang Y., Chen M., Wang Y., Chang J., Yang G., He G., Li Y., Chen X.	Integrated omic analysis provides insights into the molecular regulation of stress tolerance by partial root-zone drying in rice.	Front Plant Sci	14	1156514	2023		
53397	37295354	Kim S.J., Tran B.Q., Jung S.	Methyl jasmonate-induced senescence results in alterations in the status of chlorophyll precursors and enzymatic antioxidants in rice plants.	Biochem. Biophys. Res. Commun.	671	38-45	2023		
53398	37426219	Tang C., Han M., Yang X., Shen T., Gao Y., Wang Y., Zhang S., Chen D., He D., Li Y.C.	Gene Expression, enzyme activity, Nitrogen Use Efficiency, and Yield of Rice Affected by Controlled-Release Nitrogen.	ACS Omega	8(26)	23772-23781	2023		
53399	37352697	Shafiq F., Ahmad A., Anwar S., Nisa M.U., Iqbal M., Raza S.H., Mahmood A., Ashraf M.	Spinel nanocomposite (nMnZnFe2O4) synchronously promotes grain yield and Fe-Zn biofortification in non-aromatic rice.	Plant Physiol. Biochem.	201	107830	2023		
53400	37444233	Guo X., Wang L., Zhu G., Xu Y., Meng T., Zhang W., Li G., Zhou G.	Impacts of Inherent Components and Nitrogen Fertilizer on Eating and Cooking Quality of Rice: A Review.	Foods	12(13)		2023		
53401	37444239	Hasan M., Quan N.V., Anh H., Khanh T.D., Xuan T.D.	Salinity Treatments Promote the Accumulations of Momilactones and Phenolic Compounds in Germinated Brown Rice.	Foods	12(13)		2023		
53402	37426980	Bhavya M.S.P., Manju R.V., Viji M.M., Roy S., Anith K.N., Beena R.	Impact of biofertilisers on iron homeostasis and grain quality in the rice variety Uma under Elevated CO2.	Front Plant Sci	14	1144905	2023		
53403	37359383	Chen L., Ma Y., He T., Chen T., Pan Y., Zhou D., Li X., Lu Y., Wu Q., Wang L.	Integrated transcriptome and metabolome analysis unveil the response mechanism in wild rice (<i>Zizania latifolia</i> griseb.) against sheath rot infection.	Front Genet	14	1163464	2023		
53404	37351205	Sharma N., Madan B., Khan M.S., Sandhu K.S., Raghuram N.	Weighted gene co-expression network analysis of nitrogen (N)-responsive genes and the putative role of G-quadruplexes in N use efficiency (NUE) in rice.	Front Plant Sci	14	1135675	2023		
53405	37257457	Fonthal G., Tirado-Mej&#xed;a L., Giraldo-Pinto LA.	Study of the senescence of rice leaves through stationary and time-resolved photoluminescence.	Methods Appl Fluoresc	11(3)		2023		
53406	37291108	Wang X., Cheng R., Xu D., Huang R., Li H., Jin L., Wu Y., Tang J., Sun C., Peng D., Chu C., Guo X.	MG1 interacts with a protease inhibitor and confers resistance to rice root-knot nematode.	Nat Commun	14(1)	3354	2023	AOS2,AOS4,_,_,AOC,PAL1,NH1,BZIP17,OPR2,PR1-72,NH2,_,BZIP83,BZIP63,OG1,NH3,WRKY45,JAR1,BZIP49,OPR1,SCI1,LOX8,PR1-101,RMC,MG1,PR1-73,LOX2,COI1B,PR1A,OPR5,_,BZIP64	OsAOS2, CYP74A2, OsAOS, OsAOS1,OsAOS4, CYP74A4, OsHPL1, HPL1,PR10, OsPR10C, PR10C,OsPR1, PR1,OsAOC, AOC1, OsAOC1, HB, CPM2, OsAOC4, AOC4,OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6,OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2, DLN5, OsDLN5,  OsBTBA1, BTBA1,OsbZIP17, OsTGA4, TGA4,OsOPR2, OsOPR06-5,OsPR1#072, OsPR1-72, PR1L, OsPR1L, OsPRB1, PRB1,OsNH2, OsNPR2, NPR2, OsNPR2/NH2, DLN21, OsDLN21, PR2, OsNPR1, NPR1,  OsBTBA2, BTBA2, OsNPR3, NPR3,OsPAL04, PAL04, PAL, OsPAL7, PAL7,OsbZIP83, TGAL11, OsTGAL11, OsTGA2, TGA2,OsbZIP63, rTGA2.1, OsrTGA2.1, OsbZIP20, bZIP20,OsOPR7, OPR7, OsOPR13, OsOPR3, OsOPR5, OsOPR9, OsOPR08-1,  OPR13, OPR3, OPR5, OPR9, OPR08-1, OsOPR8, OPR8,OsNPR3, OsNH3, NPR3, OsNPR3.1, OsNPR3.2, OsNPR3.3 ,  OsBTBA4, BTBA4, OsNPR4, NPR4,OsWRKY45, OsWRKY45-1, OsWRKY45-2, WRKY45-1, WRKY45-2,OsJAR1, OsGH3.5, GH3.5, OsGH3-5, GH3-5,OsbZIP49, OsbZIP50, bZIP50,OsOPR1, OsOPR2, OsOPR11, OsOPR06-6, OPDAR1, OsOPR, OPDAR,Sci1, PR6, OsSci1, OsPR6, MGBP1, OsMGBP1,OsLOX8, OsLOX9, LOX9, OsLOX2;3, LOX2;3, OsLOX2, OsLOX1, CM-LOX8,OsPR1#101, OsPR1-101, OsPR1L2, PR1L2, OsPRB1, PRB1,OsRMC, OsRLK, OsDUF26, DUF26, OsCBMIP, CBMIP, NCS, OsNCS, OsCRK5, CRK5,OsMG1,OsPR1#073, OsPR1-73,OsLOX2, OsLOX6, LOX6,OsCOI1b, COI1b, OsCOI1H, COI1H, OsFbox260, Fbox260, Os_F0646,  OsFBL23, FBL23, OsCOl-1, COl-1,OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1, OsPR1b, PR1alpha, OsPR1alpha,OsOPR5, OsOPR6, OsOPR06-2, OPR4,Lox2:Os:1, OsLOX9, LOX9, OsLOX8, LOX8, OsLOX2, LOX2, OsRLL, OsHI-LOX, HI-LOX, RLL2 LOX, RLL2, Lox2osPil, OsLOX2;1, LOX2;1, OsLOX1, OsLOX7, LOX7,OsbZIP64, OsTGA4, TGA4
53407	37445882	Ren M., Liu S., Mao G., Tang C., Gai P., Guo X., Zheng H., Wang W., Tang Q.	Simultaneous Application of Red and Blue Light Regulate Carbon and Nitrogen Metabolism, Induces Antioxidant Defense System and Promote Growth in Rice Seedlings under Low Light Stress.	Int J Mol Sci	24(13)		2023		
53408	37289769	Edrisi Maryan K., Farrokhi N., Samizadeh Lahiji H.	Cold-responsive transcription factors in Arabidopsis and rice: A regulatory network analysis using array data and gene co-expression network.	PLoS ONE	18(6)	e0286324	2023		
53409	37447767	Duque A.F., Patino D., Colorado J.D., Petro E., Rebolledo M.C., Mondragon I.F., Espinosa N., Amezquita N., Puentes O.D., Mendez D., Jaramillo-Botero A.	Characterization of Rice Yield Based on Biomass and SPAD-Based Leaf Nitrogen for Large Genotype Plots.	Sensors (Basel)	23(13)		2023		
53410	37353991	Wu Y., Weng Z., Yan H., Yao Z., Li Z., Sun Y., Ma K., Hull J.J., Zhang D., Ma W., Hua H., Lin Y.	The microRNA-7322-5p/p38/Hsp19 axis modulates Chilo suppressalis cell-defences against Cry1Ca: an effective target for a stacked transgenic rice approach.	Plant Biotechnol. J.			2023		
53411	36801029	Lin G., He X., Zeng J., Yang Z., Wang L.	Ionome profiling and arsenic speciation provide evidence of arsenite detoxification in rice by phosphate and arsenite-oxidizing bacteria.	J Environ Sci (China)	128	129-138	2023		
53412	37375998	Mao F., Xie H., Shi Y., Jiang S., Wang S., Wu Y.	The Global Changes of N6-methyldeoxyadenosine in Response to Low Temperature in <i>Arabidopsis thaliana</i> and Rice.	Plants (Basel)	12(12)		2023		
53413	37457338	Powell A.E., Heyl A.	The origin and early evolution of cytokinin signaling.	Front Plant Sci	14	1142748	2023		
53414	37446976	Sz&#xe9;kely &#xc1;., Szal&#xf3;ki T., Jancs&#xf3; M., Pauk J., Lantos C.	Temporal Changes of Leaf Spectral Properties and Rapid Chlorophyll-A Fluorescence under Natural Cold Stress in Rice Seedlings.	Plants (Basel)	12(13)		2023		
53415	37393860	Pan X., Ullah A., Feng Y.X., Tian P., Yu X.Z.	Proline-mediated activation of glyoxalase II improve methylglyoxal detoxification in Oryza sativa L. under chromium injury: Clarification via vector analysis of enzymatic activities and gene expression.	Plant Physiol. Biochem.	201	107867	2023		
53416	37326459	Li Z., Wang J., Lin K., Liu M., Wang J., Zhang L., Xia C., Liu L., Zhang B., Yangzong Y., Han J., Zhao Y., Ye X., Huang Y., Cui Z.	Insights into the Antifungal Properties of Myxobacteria Outer Membrane &#x3b2;-1,6-Glucanase.	J. Agric. Food Chem.	71(25)	9656-9666	2023		
53417	37306516	Chen X., Pan S., Bai H., Fan J., Batool W., Shabbir A., Han Y., Zheng H., Lu G., Lin L., Tang W., Wang Z.	A nonclassically secreted effector of Magnaporthe oryzae targets host nuclei and plays important roles in fungal growth and plant infection.	Mol. Plant Pathol.			2023		
53418	37337192	Wang J., Wei J., Yi T., Li Y.Y., Xu T., Chen L., Xu H.	A green leaf volatile, (Z)-3-hexenyl-acetate, mediates differential oviposition by Spodoptera frugiperda on maize and rice.	BMC Biol.	21(1)	140	2023		
53419	37298579	Habibpourmehraban F., Wu Y., Masoomi-Aladizgeh F., Amirkhani A., Atwell B.J., Haynes P.A.	Pre-Treatment of Rice Plants with ABA Makes Them More Tolerant to Multiple Abiotic Stress.	Int J Mol Sci	24(11)		2023		
53420	37448867	Guo L., Mu Y., Wang D., Ye C., Zhu S., Cai H., Zhu Y., Peng Y., Liu J., He X.	Structural mechanism of heavy metal-associated integrated domain engineering of paired nucleotide-binding and leucine-rich repeat proteins in rice.	Front Plant Sci	14	1187372	2023		
53421	37377815	Sakhale S.A., Yadav S., Clark L.V., Lipka A.E., Kumar A., Sacks E.J.	Genome-wide association analysis for emergence of deeply sown rice (<i>Oryza sativa</i>) reveals novel aus-specific phytohormone candidate genes for adaptation to dry-direct seeding in the field.	Front Plant Sci	14	1172816	2023		
53422	37347301	Wang H., Tu R., Ruan Z., Chen C., Peng Z., Zhou X., Sun L., Hong Y., Chen D., Liu Q., Wu W., Zhan X., Shen X., Zhou Z., Cao L., Zhang Y., Cheng S.	Photoperiod and gravistimulation-associated Tiller Angle Control 1 modulates dynamic changes in rice plant architecture.	Theor. Appl. Genet.	136(7)	160	2023		
53423	37385821	Nakamura A., Hirota Y., Shigihara M., Watanabe M., Sato A., Tsuji H., Shimada Y.	Molecular and cellular insights into auxin-regulated primary root growth: a comparative study of Arabidopsis and rice.	Biosci. Biotechnol. Biochem.			2023		
53424	37339732	Zheng S., Xu C., Lv G., Shuai H., Zhang Q., Zhu Q., Zhu H., Huang D.	Foliar zinc reduced Cd accumulation in grains by inhibiting Cd mobility in the xylem and increasing Cd retention ability in roots1.	Environ. Pollut.	333	122046	2023		
53425	37352585	Xiao A., Chi Y., Huang L., Li W.C., Ye Z.	Effects of cultivar, water condition and their interactions on Cd accumulation in rice grains.	Ecotoxicol. Environ. Saf.	262	115168	2023		
53426	37390084	Robertson S.M., Wilkins O.	Spatially resolved gene regulatory networks in Asian rice (Oryza sativa cv. Nipponbare) leaves.	Plant J.			2023		
53427	37347829	Robson J.K., Ferguson J.N., McAusland L., Atkinson J.A., Tranchant-Dubreuil C., Cubry P., Sabot F., Wells D.M., Price A.H., Wilson Z.A., Murchie E.H.	Chlorophyll fluorescence-based high-throughput phenotyping facilitates the genetic dissection of photosynthetic heat tolerance in African (Oryza glaberrima) and Asian (Oryza sativa) rice.	J. Exp. Bot.			2023		
53428	37328072	Shasmita, Swain B.B., Mishra S., Mohapatra P.K., Naik S.K., Mukherjee A.K.	Chemopriming for induction of disease resistance against pathogens in rice.	Plant Sci.	334	111769	2023		
53429	37416788	Sansenya S., Payaka A., Mansalai P.	Inhibitory Efficacy of Cycloartenyl Ferulate against &#x3b1;-Glucosidase and &#x3b1;-Amylase and Its Increased Concentration in Gamma-Irradiated Rice (Germinated Rice).	Preventive Nutrition and Food Science	28(2)	170-177	2023		
53430	37447008	Wu S., Zhang Z., Sun H., Hu H.	Responses of Rice Yield, N Uptake, NH3 and N2O Losses from Reclaimed Saline Soils to Varied N Inputs.	Plants (Basel)	12(13)		2023		
53431	37189416	Jose R.C., Kanchal T., Louis B., Talukdar N.C., Chowdhury D.	Grain Characteristics, Moisture, and Specific Peptides Produced by <i>Ustilaginoidea virens</i> Contribute to False Smut Disease in Rice (<i>Oryza sativa</i> L.).	Biomolecules	13(4)		2023		
53432	37076907	Mahto A., Yadav A., P V A., Parida S.K., Tyagi A.K., Agarwal P.	Cytological, transcriptome and miRNome temporal landscapes decode enhancement of rice grain size.	BMC Biol.	21(1)	91	2023		
53433	37041465	Shuochen J., Lihe Z., Fenqin H., Xiangru T., Bin D.	Zinc supplementation and light intensity affect 2-acetyl-1-pyrroline (2AP) formation in fragrant rice.	BMC Plant Biol.	23(1)	194	2023		
53434	37153001	Wang Y., Wang Y., Chen W., Dong Y., Zhang G., Deng H., Liu X., Lu X., Wang F., Chen G., Xiao Y., Tang W.	Comparative transcriptome analysis of the mechanism difference in heat stress response between <i>indica</i> rice cultivar "IR64" and <i>japonica</i> cultivar "Koshihikari" at the seedling stage.	Front Genet	14	1135577	2023		
53435	37103882	Gao H., Lin X., Yuan X., Zou J., Zhang H., Zhang Y., Liu Z.	The salivary chaperone protein NlDNAJB9 of Nilaparvata lugens activated plant immune responses.	J. Exp. Bot.			2023		
53436	37112591	Li B., Wang S., You X., Wen Z., Huang G., Huang C., Li Q., Chen K., Zhao Y., Gu M., Li X., Wei Y., Qin Y.	Effect of Foliar Spraying of Gibberellins and Brassinolide on Cadmium Accumulation in Rice.	Toxics	11(4)		2023		
53437	37081397	He N., Huang F., Lu L., Wang X., Li Q.Q., Yang D.	SPR9 encodes a 60&#xa0;S ribosomal protein that modulates panicle spreading and affects resistance to false smut in rice&#xa0;(Oryza sativa.&#xa0;L).	BMC Plant Biol.	23(1)	205	2023	SPR9	OsSPR9, RPL36-2, OsRPL36-2
53438	37061016	Qin L., Wang M., Sun X., Yu L., Wang J., Han Y., Chen S.	Formation of ferrihydrite induced by low pe+pH in paddy soil reduces Cd uptake by rice: Evidence from Cd isotope fractionation.	Environ. Pollut.	328	121644	2023		
53439	36624487	Saha S., Purkayastha S., K N., Ganguly S., Das S., Ganguly S., Sinha Mahapatra N., Bhattacharya K., Das D., Saha A.K., Biswas T., Bhattacharyya P.K., Bhattacharyya S.	Rice (<i>Oryza sativa</i>) alleviates photosynthesis and yield loss by limiting specific leaf weight under low light intensity.	Funct. Plant Biol.	50(4)	267-276	2023		
53440	37040984	Chu Y.T., Li Y., Huang Y.Z., Bao Q.L., Sun H.Y., Huang Y.C.	[Effects of Exogenous Melatonin Treatment on the Growth and Antioxidant System of Rice Seedlings Under Antimony Stress].	Huan Jing Ke Xue	44(4)	2356-2364	2023		
53441	37176891	Abu-Ria M., Shukry W., Abo-Hamed S., Albaqami M., Almuqadam L., Ibraheem F.	Humic Acid Modulates Ionic Homeostasis, Osmolytes Content, and Antioxidant Defense to Improve salt tolerance in Rice.	Plants (Basel)	12(9)		2023		
53442	37150010	Cao H., Chen D., Kuang L., Yan T., Gao F., Wu D.	Metabolomic analysis reveals the molecular responses to copper toxicity in rice (Oryza sativa).	Plant Physiol. Biochem.	199	107727	2023		
53443	37071312	Shen W., Sun J., Xiao Z., Feng P., Zhang T., He G., Sang X.	Narrow and Stripe Leaf 2 Regulates Leaf Width by Modulating Cell Cycle Progression in Rice.	Rice (N Y)	16(1)	20	2023	PIS1,KRP5,CDC2-2,CYCD4;1,E2F2,ST1	Orysa;Rb2, RBR2, OsRBR1, RBR1, OsPIS1, RB2, OsRB2, RB1, OsRB1,OsiICK5, Orysa;KRP5, OrysaICK5, Orysa;ICK5, OsKRP5, OsICK5, ICK5 ,cdc2Os-2, CDC2Os-2, CDKA-2, CDKA;2, Orysa;CDKA;2, Rcdc2-2, OsCDKA;2, OsCDKA2, CDKA2, CDKA;1, OsCDKA;1, CDC20S-2, OsCDC20S-2,CycD2;1, CYCD2-1, Orysa;CycD2;1, OsCYCD2;1, Orysa;CycD4;1, CycD4;1, CYCD4-1, Orysa;CYCD4;1, cycD, OsCYCD4;1,,Orysa;E2F2, OsE2F2, DLN252, OsDLN252, OsE2Fa-2, E2Fa-2,st1(ws1), ws1, st1, OsST1, RNRS1, OsRNRS1, rnrs1, RNRS, SDL/RNRS1, SDL, OsSDL, NSL2, OsNSL2
53444	36702576	Kim N., Jeong J., Kim J., Oh J., Choi G.	Shade represses photosynthetic genes by disrupting the DNA binding of GOLDEN2-LIKE1.	Plant Physiol.	191(4)	2334-2352	2023		
53445	37107451	Su Y., Huang X., Li L., Muhammad Z.A., Li M., Zheng T., Guo Z., Zhang Y., Luo D., Ye X., Jia X., Hussain Panhwar F., Tun M.T., Zhu J.	Comparative Responses of Silicon to Reduce Cadmium and Enrich Selenium in Rice Varieties.	Foods	12(8)		2023		
53446	37072409	Lu Z., Fang Z., Liu W., Lu D., Wang X., Wang S., Xue J., He X.	Grain quality characteristics analysis and application on breeding of Yuenongsimiao, a high-yielding and disease-resistant rice variety.	Sci Rep	13(1)	6335	2023		
53447	37111867	Khan I., Mahmood S., Chattha M.U., Bilal Chattha M., Ahmad S., Awan M.I., Alqahtani F.M., Hashem M., Alhaithloul H.A.S., Qari S.H., Mahmood F., Hassan M.U.	Organic Amendments Improved the Productivity and Bio-Fortification of Fine Rice by Improving Physiological Responses and Nutrient Homeostasis under Salinity Stress.	Plants (Basel)	12(8)		2023		
53448	36932862	Yan W., Yuan S., Zu Y., Chang Z., Li Y., Chen Z., Xie G., Chen L., Lu C., Deng X.W., Yang C., Xu C., Tang X.	Ornithine &#x3b4;-aminotransferase OsOAT is critical for male fertility and cold tolerance during rice plant development.	Plant J.	114(6)	1301-1318	2023		
53449	36715652	Xu Q., Wang Y., Yue Y., Chen Z., Zhou D.X., Zhao Y.	Transcription factor WOX11 regulates protein translation via ribosome protein acetylation in rice roots.	Plant Physiol.	191(4)	2224-2228	2023		
53450	37036613	Zhang B., Shi F., Zheng X., Pan H., Wen Y., Song F.	Effects of AMF Compound Inoculants on Growth, Ion Homeostasis, and salt tolerance-Related Gene Expression in Oryza sativa L. Under Salt Treatments.	Rice (N Y)	16(1)	18	2023		
53451	36472361	Inagaki H., Hayashi K., Takaoka Y., Ito H., Fukumoto Y., Yajima-Nakagawa A., Chen X., Shimosato-Nonaka M., Hassett E., Hatakeyama K., Hirakuri Y., Ishitsuka M., Yumoto E., Sakazawa T., Asahina M., Uchida K., Okada K., Yamane H., Ueda M., Miyamoto K.	Genome Editing Reveals Both the Crucial Role of OsCOI2 in Jasmonate Signaling and the Functional Diversity of COI1 Homologs in Rice.	Plant Cell Physiol.	64(4)	405-421	2023		
53452	37175730	Sheng X., Ai Z., Tan Y., Hu Y., Guo X., Liu X., Sun Z., Yu D., Chen J., Tang N., Duan M., Yuan D.	Novel Salinity-Tolerant Third-Generation Hybrid Rice Developed via CRISPR/Cas9-Mediated Gene Editing.	Int J Mol Sci	24(9)		2023		
53453	37096648	Zhang Y., Zhang Q., Guo M., Wang X., Li T., Wu Q., Li L., Yi K., Ruan W.	NIGT1 represses plant growth and mitigates phosphate starvation signaling to balance the growth response tradeoff in rice.	J Integr Plant Biol			2023	TIFY6B,BZR1,PAP10A,SPX2,PHR2,BZR2,ERF57,NIGT1,ERF50,ERF58,IPS1,FCO11,IAA14,SQD2.2,VPE2,CPD1,CYCB1;1,PSF3,miR827,MGD2,PT24	OsJAZ8, JAZ8, OsJAZ 4, OsJAZ4, JAZ4, OsTIFY6b, OsJAZ4-2, JAZ4-2. OsJAZ3, JAZ3,OsBZR1, Os BZR1, OsBES1-6, BES1-6,OsPAP10a, PAP10, OsPAP2, PAP2,OsSPX2,OsPHR2, Os-PHR2,OsBZR2, OsBES1-2, BES1-2,OsERF#057, OsERF057, OsERF57, AP2/EREBP#145, AP2/EREBP145, OsERF1, ERF1,OsNIGT1, HINGE6, OsHINGE6,OsERF#050, OsERF050, OsERF50, AP2/EREBP#113, AP2/EREBP113, OsDREB6, OsERF60, ERF60,OsERF#058, OsERF058, OsERF58, AP2/EREBP#032, AP2/EREBP32, OsERF77, ERF77,OsIPS1,OsFCO11, OsVPE1, VPE1,OsIAA14, AUX/IAA14, OsAUX/IAA14 ,OsSQD2, SQD2, OsSQD2.2,OsVPE2,OsCPD1, CYP90A3, CYP90A3/OsCPD1, CPD, OsCPD2, CPD2,CycB1;1, CycB1;os;1, Orysa;CycB1;1, OsCycB1;1, CyclaZm, CYCIaZm, OsCYCIaZm, OsCYCB1;4,OsPSF3,miR827a, OsmiR827a, miR827, osa-miR827, osa-MIR827, OsMiR827, miR827b, osa-miR827b, osa-MIR827b,OsMGD, MGD, OsMGD2, OsMGDG3, MGDG3,OsPT24, OsPHT4;4, PHT4;4
53454	37187544	Zhang X., Wan Q., Rui P., Lu Y., Sun Z., Chen J., Wang Y., Yan F.	Rice stripe virus p2 protein interacts with ATG5 and is targeted for degradation by autophagy.	Front Microbiol	14	1191403	2023		
53455	37112588	Paniz F.P., Pedron T., Proc&#xf3;pio VA., Lange C.N., Freire B.M., Batista B.L.	Selenium Biofortification Enhanced Grain Yield and Alleviated the Risk of Arsenic and Cadmium Toxicity in Rice for Human Consumption.	Toxics	11(4)		2023		
53456	37100356	Akbar M.U., Aqeel M., Iqbal N., Zafar S., Noman A.	Morpho-physiological characterization and metabolic profiling of rice lines for immunity to counter Helminthosporiumoryzae.	Microb. Pathog.	179	106126	2023		
53457	36708194	Yang K., Huang Y., Yang J., Lv C., Hu Z., Yu L., Sun W.	Effects of three patterns of elevated CO2 in single and multiple generations on photosynthesis and stomatal features in rice.	Ann. Bot.	131(3)	463-473	2023		
53458	37111873	Kim G., Sung J.	Transcriptional Expression of Nitrogen Metabolism Genes and Primary Metabolic Variations in Rice Affected by Different Water Status.	Plants (Basel)	12(8)		2023		
53459	37113790	Tefera S., Aragaw M., Molla T.	Agro-morphological and physiochemical studies of upland rice (Oryza sativa L.) varieties for variability with yield and quality related parameters in south Gondar district, Ethiopia.	Heliyon	9(4)	e15186	2023		
53460	37108508	Wang H., Zhu Y., Wang L., Xiao C., Yuan J., Liu Y.G., Zhang Q.	Double Mutation of <i>Days to Heading 2</i> and <i>CONSTANS 3</i> Improves Agronomic Performance of <i>Japonica</i> Rice under Short Daylight Conditions in Southern China.	Int J Mol Sci	24(8)		2023		
53461	37180383	Chen G., Peng L., Gong J., Wang J., Wu C., Sui X., Tian Y., Hu M., Li C., He X., Yang H., Zhang Q., Ouyang Y., Lan Y., Li T.	Effects of water stress on starch synthesis and accumulation of two rice cultivars at different growth stages.	Front Plant Sci	14	1133524	2023		
53462	36994645	Ta K.N., Shimizu-Sato S., Agata A., Yoshida Y., Taoka K.I., Tsuji H., Akagi T., Tanizawa Y., Sano R., Nosaka-Takahashi M., Suzuki T., Demura T., Toyoda A., Nakamura Y., Sato Y.	A leaf-emanated signal orchestrates grain size and number in response to maternal resources.	Plant J.	115(1)	175-189	2023	FTL9,LHS1	OsFTL9, OsFT-L9, FT-L9,OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO, OsLHS1, OsLG3b, LG3b, qLGY3, LGY3, DLN80, OsDLN80, OLR, OsOLR, GW3p6, OsGW3p6, OsMADS1GW3p6, MADS1GW3p6, qLGY3/OsLG3b/GW3p6
53463	37014030	Wang C., Cheng H., Xu W., Xue J., Hua X., Tong G., Ma X., Yang C., Lan X., Shen S.Y., Yang Z., Huang J., Cheng Y.	Arabidopsis pollen-specific GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE-LIKE genes are essential for pollen tube tip growth.	J Integr Plant Biol			2023	GDPDL5,GDPDL2,GDPD,GDPDL1,GDPDL3	OsGDPDL5, OsGL5, GL5,OsGDPDL2, OsGL2, GL2,OsGdpD, GdpD, OsGDPDL4, GDPDL4, OsGL4, GL4,OsGDPDL1, OsGL1, GL1,OsGDPDL3, OsGL3, GL3
53464	37108303	Liu H., Zeng B., Zhao J., Yan S., Wan J., Cao Z.	Genetic Research Progress: heat tolerance in Rice.	Int J Mol Sci	24(8)		2023		
53465	36583226	Brestovitsky A., Iwasaki M., Cho J., Adulyanukosol N., Paszkowski J., Catoni M.	Specific suppression of long terminal repeat retrotransposon mobilization in plants.	Plant Physiol.	191(4)	2245-2255	2023		
53466	37093272	Xu Y., Chen S., Xue M., Chen X., Liu Z., Wei X., Gao J.P., Chen C.	Mapping and validation of quantitative trait loci associated with dorsal aleurone thickness in rice (Oryza sativa).	Theor. Appl. Genet.	136(5)	117	2023		
53467	37180379	Zhang C., Li M., Rey J.D., Feng T., Lafitte R., Zheng T., Lv Y., Wu F., Fu B., Xu J., Zhang F., Zeng W., Liu E., Ali J., Wang W., Li Z.	Simultaneous improvement and genetic dissection of drought and submergence tolerances in rice (<i>Oryza sativa</i> L.) by selective introgression.	Front Plant Sci	14	1134450	2023		
53468	37050192	Hirano H., Watanabe T., Fukuda M., Fukao T.	The Impact of Carbohydrate Management on Coleoptile Elongation in Anaerobically Germinating Seeds of Rice (<i>Oryza sativa</i> L.) under Light and Dark Cycles.	Plants (Basel)	12(7)		2023		
53469	36804662	Morita S., Tamba N., Shibasaka M., Sasano S., Kadoike T., Urase Y., Maruyama M., Fukuoka A., Yanai J., Masumura T., Ogihara Y., Satoh S., Tanaka K., Katsuhara M., Nakayama H.	In planta evidence that the HAK transporter OsHAK2 is involved in Na+ transport in rice.	Biosci. Biotechnol. Biochem.	87(5)	482-490	2023		
53470	37107660	Mohanty S.P., Nayak D.K., Sanghamitra P., Barik S.R., Pandit E., Behera A., Pani D.R., Mohapatra S., Raj K R R., Pradhan K.C., Sahoo C.R., Mohanty M.R., Behera C., Panda A.K., Jena B.K., Behera L., Dash P.K., Pradhan S.K.	Mapping the Genomic Regions Controlling germination rate and Early Seedling Growth Parameters in Rice.	Genes (Basel)	14(4)		2023		
53471	37177029	Yue L., Xie B., Cao X., Chen F., Wang C., Xiao Z., Jiao L., Wang Z.	The Mechanism of Manganese Ferrite Nanomaterials Promoting Drought Resistance in Rice.	Nanomaterials (Basel)	13(9)		2023		
53472	37404343	Nguyen N.B., Nguyen N.T.M., Nguyen N.T., Le L.H., La N.T., Nguyen T.T.T., Yanoria M.J., Hayashi N., Saito H., Obara M., Sato T., Fukuta Y.	A unique genetic variation with respect to blast (<i>Pyricularia oryzae</i> Cavara) resistance in rice (<i>Oryza sativa</i> L.) varieties in Vietnam.	Breed. Sci.	73(2)	193-203	2023		
53473	37068119	Hughes T.E., Sedelnikova O., Thomas M., Langdale J.A.	Mutations in NAKED-ENDOSPERM IDD genes reveal functional interactions with SCARECROW during leaf patterning in C4 grasses.	PLoS Genet.	19(4)	e1010715	2023	SCR1,NKD,SCR	OsSCR1, OsSCR, OsGRAS-41, OsGRAS41, GRAS-41, GRAS41,IDD10, OsIDD10, OsNKD, OsZOS4-11, ZOS4-11,OsSCR, OsSCR2, SCR2, OsGRAS-51, OsGRAS51, GRAS-51, GRAS51
53474	37031264	Zayed B.A., Ghazy H.A., Negm M.E., Bassiouni S.M., Hadifa A.A., El-Sharnobi DE., Abdelhamed M.M., Abo-Marzoka EA., Okasha A.M., Elsayed S., Farooque A.A., Yaseen Z.M.	Response of varied rice genotypes on cell membrane stability, defense system, physio-morphological traits and yield under transplanting and aerobic cultivation.	Sci Rep	13(1)	5765	2023		
53475	37058097	Gupta R., Min C.W., Jung J.Y., Ham T.H., Jeon J.S., Cho L.H., Kwon S.W., Kim S.T.	Proteome profiling highlights mechanisms underlying pigment and tocopherol accumulation in red and black rice seeds.	Proteomics	23(12)	e2300035	2023		
53476	37111920	Singh B.K., Venkadesan S., Ramkumar M.K., Shanmugavadivel P.S., Dutta B., Prakash C., Pal M., Solanke A.U., Rai A., Singh N.K., Mohapatra T., Sevanthi A.M.	Meta-Analysis of Microarray Data and Their Utility in Dissecting the Mapped QTLs for Heat Acclimation in Rice.	Plants (Basel)	12(8)		2023		
53477	37052181	Meijer A., Atighi M.R., Demeestere K., De Meyer T., Vandepoele K., Kyndt T.	Dicer-like 3a mediates intergenerational resistance against root-knot nematodes in rice via hormone responses.	Plant Physiol.			2023		
53478	37095447	Bornhofen E., F&#xe8; D., Nagy I., Lenk I., Greve M., Didion T., Jensen C.S., Asp T., Janss L.	Genetic architecture of inter-specific and -generic grass hybrids by network analysis on multi-omics data.	BMC Genomics	24(1)	213	2023		
53479	37071534	Ouyang W., Zhang X., Guo M., Wang J., Wang X., Gao R., Ma M., Xiang X., Luan S., Xing F., Cao Z., Yan J., Li G., Li X.	Haplotype mapping of H3K27me3-associated chromatin interactions defines topological regulation of gene silencing in rice.	Cell Rep	42(4)	112350	2023		
53480	37073130	Li B., Li D., Cai L., Zhou Q., Liu C., Lin J., Li Y., Zhao X., Li L., Liu X., He C.	Transcriptome-wide profiling of RNA N4-cytidine acetylation in Arabidopsis thaliana and Oryza sativa.	Mol Plant	16(6)	1082-1098	2023		
53481	37095350	Sun C., Lei Y., Li B., Gao Q., Li Y., Cao W., Yang C., Li H., Wang Z., Li Y., Wang Y., Liu J., Zhao K.T., Gao C.	Precise integration of large DNA sequences in plant genomes using PrimeRoot editors.	Nat. Biotechnol.			2023		
53482	37106367	Guo X., Wang T., Jiang L., Qi H., Zhang Z.	PlaASDB: a comprehensive database of plant alternative splicing events in response to stress.	BMC Plant Biol.	23(1)	225	2023		
53483	37110343	Kavya N., Prasannakumar M.K., Venkateshbabu G., Niranjan V., Uttarkar A., Buela Parivallal P., Banakar S.N., Mahesh H.B., Devanna P., Manasa K.G., Shivakumara T.N.	Insights on Novel Effectors and Characterization of Metacaspase (RS107_6) as a Potential Cell Death-Inducing Protein in <i>Rhizoctonia solani</i>.	Microorganisms	11(4)		2023		
53484	37050877	Cao S., Wang Y., Gao Y., Xu R., Ma J., Xu Z., Shang-Guan K., Zhang B., Zhou Y.	The RLCK-VND6 module coordinates secondary cell wall formation and adaptive growth in rice.	Mol Plant	16(6)	999-1015	2023	RLCK269	OsRLCK269, CSK1, OsCSK1
53485	36503784	He C., Zhou J., Yang C., Song Z., He J., Huang Z., Deng Y., Wang J., Xiong Y., Dang Z.	Accumulation, transportation, and distribution of tetracycline and cadmium in rice.	J Environ Sci (China)	126	58-69	2023		
53486	37092872	Khan A., Pudhuvai B., Shrestha A., Mishra A.K., Shah M.P., Koul B., Dey N.	CRISPR-mediated iron and folate biofortification in crops: advances and perspectives.	Biotechnol. Genet. Eng. Rev.		1-31	2023		
53487	36928886	Peralta Ogorek LL., Takahashi H., Nakazono M., Pedersen O.	The barrier to radial oxygen loss protects roots against hydrogen sulphide intrusion and its toxic effect.	New Phytol.	238(5)	1825-1837	2023		
53488	37016094	Li W., Wang D., Hong X., Shi J., Hong J., Su S., Loaiciga C.R., Li J., Liang W., Shi J., Zhang D.	Identification and validation of new MADS-box homologous genes in 3010 rice pan-genome.	Plant Cell Rep.	42(6)	975-988	2023		
53489	37121023	Etesami H., Jeong B.R., Raheb A.	Arsenic (As) resistant bacteria with multiple plant growth-promoting traits: Potential to alleviate As toxicity and accumulation in rice.	Microbiol. Res.	272	127391	2023		
53490	37079162	Chen S.Y., Lai M.H., Chu Y.L., Wu D.H., Tung C.W., Chen Y.J., Chung C.L.	Identification of qBK2.1, a novel QTL controlling rice resistance against Fusarium fujikuroi.	Botanical Studies	64(1)	11	2023		
53491	37111901	Ma M., Lei E., Wang T., Meng H., Zhang W., Lu B.	Genetic Diversity and Association Mapping of Grain-Size Traits in Rice Landraces from the Honghe Hani Rice Terraces System in Yunnan Province.	Plants (Basel)	12(8)		2023		
53492	37108350	Duan W., Xue B., He Y., Liao S., Li X., Li X., Liang Y.K.	Genome-Wide Identification and Expression Pattern Analysis of Dirigent Members in the Genus <i>Oryza</i>.	Int J Mol Sci	24(8)		2023	DIR12,JAC1,DIR24,DIR14,DIR1,DIR42,DIR7,DIR22,DIR38,DIR17,DIR21,DIR25,DIR6,PUPK20-2,DIR49,DIR19,DIR48,DIR34,DIR13,DIR36,DIR4,DIR30,DIR16,DIR5,DIR37,DIR23,DIR39,DIR28,DIR43,DIR11,DIR52,DIR31,DIR44,DIR53,DIR27,DIR29,JRL27,DIR10,DIR47,DIR15,DIR2,DIR20,DIR40,DIR3,DIR8,DIR18,DIR45,DIR41,DIR46,DIR50,DIR33,DIR32,DIR9,DIR26,DIR35	OsDIR12, OsjDIR12,OsJAC1, DIR54, OsDIR54, OsjDIR54, OsJRL29, JRL29,OsDIR24, OsjDIR24,OsDIR14, OsjDIR14,OsDIR1, OsjDIR1,OsDIR42, OsjDIR42,OsDIR7, OsjDIR7,OsDIR22, OsjDIR22,OsDIR38, OsjDIR38,OsDIR17, OsjDIR17,OsDIR21, OsjDIR21,OsDIR25, OsjDIR25,OsDIR6, OsjDIR6,OsPupK20-2, PupK20-2, DIR55, OsDIR55, OsjDIR55,OsDIR49, OsjDIR49,OsDIR19, OsjDIR19,OsDIR48, OsjDIR48,OsDIR34, OsjDIR34,OsDIR13, OsjDIR13,OsDIR36, OsjDIR36,OsDIR4, OsjDIR4,OsDIR30, OsjDIR30,OsDIR16, OsjDIR16,OsDIR5, OsjDIR5,OsDIR37, OsjDIR37,OsDIR23, OsjDIR23,OsDIR39, OsjDIR39,OsDIR28, OsjDIR28,OsDIR43, OsjDIR43,OsDIR11, OsjDIR11,OsDIR52, OsjDIR52,OsDIR31, OsjDIR31,OsDIR44, OsjDIR44,OsDIR53, OsjDIR53,OsDIR27, OsjDIR27,OsDIR29, OsjDIR29,DIR51 , OsDIR51, OsjDIR51, OsJRL27,OsDIR10, OsjDIR10,OsDIR47, OsjDIR47,OsDIR15, OsjDIR15,OsDIR2, OsjDIR2,OsDIR20, OsjDIR20,OsDIR40, OsjDIR40,OsDIR3, OsjDIR3,OsDIR8, OsjDIR8,OsDIR18, OsjDIR18,OsDIR45, OsjDIR45,OsDIR41, OsjDIR41,OsDIR46, OsjDIR46,OsDIR50, OsjDIR50,OsDIR33, OsjDIR33,OsDIR32, OsjDIR32,OsDIR9, OsjDIR9,OsDIR26, OsjDIR26,OsDIR35, OsjDIR35, OsSSP1, SSP1
53493	37240763	Mitra D., Panneerselvam P., Senapati A., Chidambaranathan P., Nayak A.K., Mohapatra P.K.D.	Arbuscular Mycorrhizal Fungi Response on Soil Phosphorus Utilization and Enzymes Activities in Aerobic Rice under Phosphorus-Deficient Conditions.	Life (Basel)	13(5)		2023		
53494	37111874	Wu P., Nie Z., Huang Z., Zhang X.	CircPCBL: Identification of Plant CircRNAs with a CNN-BiGRU-GLT Model.	Plants (Basel)	12(8)		2023		
53495	37149887	Sun B., Shen Y., Chen S., Shi Z., Li H., Miao X.	A novel transcriptional repressor complex MYB22-TOPLESS-HDAC1 promotes rice resistance to brown planthopper by repressing F3'H.expression.	New Phytol.	239(2)	720-738	2023		
53496	37176961	Santanoo S., Lontom W., Dongsansuk A., Vongcharoen K., Theerakulpisut P.	Photosynthesis Performance at Different Growth Stages, Growth, and Yield of Rice in Saline Fields.	Plants (Basel)	12(9)		2023		
53497	37155961	Rojek J., Ohad N.	"The phenomenon of autonomous endosperm in sexual and apomictic plants".	J. Exp. Bot.			2023		
53498	37257808	Qiu J., Chen Y., Liu Z., Wen H., Jiang N., Shi H., Kou Y.	The application of zinc oxide nanoparticles: An effective strategy to protect rice from rice blast and abiotic stresses.	Environ. Pollut.	331(Pt 1)	121925	2023		
53499	37240026	Dai X., Wang Y., Yu K., Zhao Y., Xiong L., Wang R., Li S.	<i>OsNPR1</i> Enhances Rice Resistance to <i>Xanthomonas oryzae</i> pv. <i>oryzae</i> by Upregulating Rice Defense Genes and Repressing Bacteria Virulence Genes.	Int J Mol Sci	24(10)		2023		
53500	36755501	Sun Z., Peng J., Lv Q., Ding J., Chen S., Duan M., He Q., Wu J., Tian Y., Yu D., Tan Y., Sheng X., Chen J., Sun X., Liu L., Peng R., Liu H., Zhou T., Xu N., Lou J., Yuan L., Wang B., Yuan D.	Dissecting the genetic basis of heterosis in elite super-hybrid rice.	Plant Physiol.	192(1)	307-325	2023		
53501	37177874	Chen M.H., Pinson S.R.M., Jackson A.K., Edwards J.D.	Genetic loci regulating the concentrations of anthocyanins and proanthocyanidins in the pericarps of purple and red rice.	Plant Genome	16(2)	e20338	2023		
53502	37246172	Wimalagunasekara S.S., Weeraman JWJK., Tirimanne S., Fernando P.C.	protein-protein interaction (PPI) network analysis reveals important hub proteins and sub-network modules for root development in rice (Oryza sativa).	J Genet Eng Biotechnol	21(1)	69	2023		
53503	37208408	Jalil S., Ali Q., Khan A.U., Nazir M.M., Ali S., Zulfiqar F., Javed M.A., Jin X.	Molecular and biochemical characterization of rice developed through conventional integration of nDart1-0 transposon gene.	Sci Rep	13(1)	8139	2023		
53504	36879437	Ndecky S., Nguyen T.H., Eiche E., Cognat V., Pflieger D., Pawar N., Betting F., Saha S., Champion A., Riemann M., Heitz T.	Jasmonate signaling controls negative and positive effectors of salt stress tolerance in rice.	J. Exp. Bot.	74(10)	3220-3239	2023		
53505	37312745	Li F., Wang K., Zhang X., Han P., Liu Y., Zhang J., Peng T., Li J., Zhao Y., Sun H., Du Y.	<i>BPB1</i> regulates rice (<i>Oryza sative</i> L.) panicle length and panicle branch development by promoting lignin and inhibiting cellulose accumulation.	Mol. Breed.	43(5)	41	2023		
53506	37142096	Ahmar S., Zolkiewicz K., Gruszka D.	Analyses of genes encoding the Glycogen Synthase Kinases in rice and Arabidopsis reveal mechanisms which regulate their expression during development and responses to abiotic stresses.	Plant Sci.	332	111724	2023		
53507	37169820	Sedeek K., Zuccolo A., Fornasiero A., Weber A.M., Sanikommu K., Sampathkumar S., Rivera L.F., Butt H., Mussurova S., Alhabsi A., Nurmansyah N., Ryan E.P., Wing R.A., Mahfouz M.M.	Multi-omics resources for targeted agronomic improvement of pigmented rice.	Nat Food	4(5)	366-371	2023		
53508	37298358	Cai H., Wang H., Zhou L., Li B., Zhang S., He Y., Guo Y., You A., Jiao C., Xu Y.	Time-Series Transcriptomic Analysis of Contrasting Rice Materials under Heat Stress Reveals a Faster Response in the Tolerant Cultivar.	Int J Mol Sci	24(11)		2023		
53509	37277199	Hari Sundar G V., Swetha C., Basu D., Pachamuthu K., Raju S., Chakraborty T., Mosher R.A., Shivaprasad P.V.	Plant polymerase IV sensitizes chromatin through histone modifications to preclude spread of silencing into protein-coding domains.	Genome Res.	33(5)	715-728	2023		
53510	37175839	Hou Y., Liang Y., Yang C., Ji Z., Zeng Y., Li G., E Z.	Complete Genomic Sequence of <i>Xanthomonas oryzae</i> pv. <i>oryzae</i> Strain, LA20, for Studying Resurgence of Rice Bacterial Blight in the Yangtze River Region, China.	Int J Mol Sci	24(9)		2023		
53511	37243874	Huang C.C., Lee Y.T., Ly T.T., Wang C.Y., Chang Y.T., Hou P.F., Liu Z.H., Huang H.J.	Volatile cinnamaldehyde induces systemic salt tolerance in the roots of rice (Oryza sativa).	Physiol Plant	175(3)	e13938	2023		
53512	37163561	Chowdhury A.T., Hasan M.N., Bhuiyan F.H., Islam M.Q., Nayon M.R.W., Rahaman M.M., Hoque H., Jewel N.A., Ashrafuzzaman M., Prodhan S.H.	Identification, characterization of Apyrase (APY) gene family in rice (Oryza sativa) and analysis of the expression pattern under various stress conditions.	PLoS ONE	18(5)	e0273592	2023	APY9,APY4,APY7,APY2,APY5,RTH1,APY8,APY1,APY6	OsAPY9,OsAPY4,OsAPY7,OsAPY2,OsAPY5,OsAPY, RTH1, OsAPY3, APY3,OsAPY8,OsAPY1,OsAPY6
53513	36881928	Bi Y., Yassue R.M., Paul P., Dhatt B.K., Sandhu J., Do P.T., Walia H., Obata T., Morota G.	Evaluating metabolic and genomic data for predicting grain traits under high night temperature stress in rice.	G3 (Bethesda)	13(5)		2023		
53514	37129443	Liu C., Li C., Bing H., Zhao J., Li L., Sun P., Li T., Du D., Zhao J., Wang X., Xiang W.	Integrated Physiological, Transcriptomic, and Metabolomic Analysis Reveals the Mechanism of Guvermectin Promoting Seed Germination in Direct-Seeded Rice under Chilling Stress.	J. Agric. Food Chem.	71(19)	7348-7358	2023		
53515	37240235	Wu H., He Q., Wang Q.	Advances in Rice Seed Shattering.	Int J Mol Sci	24(10)		2023		
53516	37251759	Gong W., Proud C., Fukai S., Mitchell J.	Low canopy temperature and high stomatal conductance contribute to high grain yield of contrasting <i>japonica</i> rice under aerobic conditions.	Front Plant Sci	14	1176156	2023		
53517	37240390	Chen H., Huang Y., Ye M., Wang Y., He X., Tu J.	Achieving High Expression of Cry in Green Tissues and Negligible Expression in Endosperm Simultaneously via <i>rbcS</i> Gene Fusion Strategy in Rice.	Int J Mol Sci	24(10)		2023		
53518	37219338	Ellsworth P.Z., Ellsworth P.V., Mertz R.A., Koteyeva N.K., Cousins A.B.	Leaf cell wall properties and stomatal density influence oxygen isotope enrichment of leaf water.	Plant Cell Environ.			2023		
53519	37397194	Xiong Q., Zhang J., Sun C., Wang R., Wei H., He H., Zhou D., Zhang H., Zhu J.	Metabolomics revealed metabolite biomarkers of antioxidant properties and flavonoid metabolite accumulation in purple rice after grain filling.	Food Chem X	18	100720	2023		
53520	37130092	Kim E., Yokono M., Tsugane K., Ishii A., Noda C., Minagawa J.	Formation of a stable <EM class="new_gene"><EM class="new_gene">PSI</EM>-<EM class="new_gene">PSII</EM></EM> megacomplex in rice that conducts energy spillover.	Plant Cell Physiol.			2023		
53521	37240100	Huang C., Wang J., Wang D., Chang J., Chen H., Chen D., Deng W., Tian C.	Genome-Wide Identification and Analysis of OsSPXs Revealed Its Genetic Influence on Cold Tolerance of Dongxiang Wild Rice (DXWR).	Int J Mol Sci	24(10)		2023		
53522	37147799	Vicentini G., Biancucci M., Mineri L., Chiriv&#xec; D., Giaume F., Miao Y., Kyozuka J., Brambilla V., Betti C., Fornara F.	Environmental control of rice flowering time.	Plant Commun		100610	2023		
53523	37209287	Pan Y.H., Nong B.X., Chen L., Yang X.H., Xia X.Z., Zhang Z.Q., Qing D.J., Gao J., Huang C.C., Li D.T., Deng G.F.	QTL mapping and identification of candidate genes for cold tolerance at the germination stage in wild rice.	Genes Genomics	45(7)	867-885	2023		
53524	37023649	Sehar S., Adil M.F., Ma Z., Karim M.F., Faizan M., Zaidi S.S.A., Siddiqui M.H., Alamri S., Zhou F., Shamsi I.H.	Phosphorus and Serendipita indica synergism augments arsenic stress tolerance in rice by regulating secondary metabolism related enzymatic activity and root metabolic patterns.	Ecotoxicol. Environ. Saf.	256	114866	2023		
53525	37367054	Li S., Feng T., Zhang C., Zhang F., Li H., Chen Y., Liang L., Zhang C., Zeng W., Liu E., Shi Y., Li M., Meng L.	Genetic Dissection of Salt Tolerance and Yield Traits of <i>Geng</i> (<i>japonica</i>) Rice by Selective Subspecific Introgression.	Curr Issues Mol Biol	45(6)	4796-4813	2023		
53526	37324704	Gowda R.S.R., Sharma S., Gill R.S., Mangat G.S., Bhatia D.	Genome wide association studies and candidate gene mining for understanding the genetic basis of straw silica content in a set of <i>Oryza nivara</i> (Sharma et Shastry) accessions.	Front Plant Sci	14	1174266	2023		
53527	37247094	Han Z., Lei X., Sha H., Liu J., Zhang C., Wang J., Zheng H., Zou D., Fang J.	Adaptation to high latitudes through a novel allele of Hd3a strongly promoting heading date in rice.	Theor. Appl. Genet.	136(6)	141	2023		
53528	37176968	Nahar L., Aycan M., Lopes Hornai EM., Baslam M., Mitsui T.	Tolerance with High Yield Potential Is Provided by Lower Na+ Ion Accumulation and Higher Photosynthetic Activity in Tolerant YNU31-2-4 Rice Genotype under Salinity and Multiple Heat and Salinity Stress.	Plants (Basel)	12(9)		2023		
53529	37194447	Gu P., Tao W., Tao J., Sun H., Hu R., Wang D., Zong G., Xie X., Ruan W., Xu G., Yi K., Zhang Y.	The D14-SDEL1-SPX4 cascade integrates the strigolactone and phosphate signalling networks in rice.	New Phytol.	239(2)	673-686	2023	PHR2,SPX4,D14,RING158	OsPHR2, Os-PHR2,OsSPX4, Os-SPX4,d14(d10), dwf13, d10, d14, D88, HTD2, OsHTD2, OsD14, qPPB3, D88/D14, HTD4,SDEL1, OsSDEL1, OsRING158
53530	36756926	Yin Y., Yan Z., Guan J., Huo Y., Wang T., Li T., Cui Z., Ma W., Wang X., Chen W.	Two interacting basic helix-loop-helix transcription factors control flowering time in rice.	Plant Physiol.	192(1)	205-221	2023	EF1,SGI1,SE1,RFT1,HD3A,POH1	Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,OsbHLH111, bHLH111, HBP1, OsHBP1, OsSGI1,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, OsHd1,  Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,FT-L 3, OsFTL3, FTL3, FT-L3, RFT, OsRFT1,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,OsPOH1
53531	37275152	Wang Z.L., Wang Y.D., Cheng Y.Q., Ye Z.H., Liu G.F., Yu X.P.	Characterization and transcriptomic analysis of a native fungal pathogen against the rice pest <i>Nilaparvata lugens</i>.	Front Microbiol	14	1162113	2023		
53532	37229136	Waheed R., Deeba F., Zulfiqar F., Moosa A., Nafees M., Altaf M.A., Arif M., Siddique K.H.M.	Physiology and growth of newly bred Basmati rice lines in response to vegetative-stage drought stress.	Front Plant Sci	14	1172255	2023		
53533	37189032	Pan Y.H., Chen L., Zhu X.Y., Li J.C., Rashid M.A.R., Chen C., Qing D.J., Zhou W.Y., Yang X.H., Gao L.J., Zhao Y., Deng G.F.	Utilization of natural alleles for heat adaptability QTLs at the flowering stage in rice.	BMC Plant Biol.	23(1)	256	2023		
53534	37251777	Zhang G., Bi Z., Jiang J., Lu J., Li K., Bai D., Wang X., Zhao X., Li M., Zhao X., Wang W., Xu J., Li Z., Zhang F., Shi Y.	Genome-wide association and epistasis studies reveal the genetic basis of saline-alkali tolerance at the germination stage in rice.	Front Plant Sci	14	1170641	2023		
53535	37195447	Sugiyama S., Sakuta M., Tsujimura Y., Yamaguchi Y., Htun T.M., Inoue C., Numaguchi K., Ishii T., Ishikawa R.	Detection of novel loci involved in non-seed-Shattering behaviour of an indica rice cultivar, Oryza sativa IR36.	Mol. Genet. Genomics	298(4)	943-953	2023		
53536	37324714	Eudes A., Lin C.Y., De Ben C., Ortega J., Lee M.Y., Chen Y.C., Li G., Putnam D.H., Mortimer J.C., Ronald P.C., Scown C.D., Scheller H.V.	Field performance of switchgrass plants engineered for reduced recalcitrance.	Front Plant Sci	14	1181035	2023		
53537	37240102	Qiu C., Zeng J., Tang Y., Gao Q., Xiao W., Lou Y.	The Fall Armyworm, <i>Spodoptera frugiperda</i> (Lepidoptera: Noctuidae), Influences <i>Nilaparvata lugens</i> Population Growth Directly, by Preying on Its Eggs, and Indirectly, by Inducing Defenses in Rice.	Int J Mol Sci	24(10)		2023		
53538	37240156	Li J., Shi X., Wang C., Li Q., Lu J., Zeng D., Xie J., Shi Y., Zhai W., Zhou Y.	Genome-Wide Association Study Identifies Resistance Loci for Bacterial Blight in a Collection of Asian Temperate <i>Japonica</i> Rice Germplasm.	Int J Mol Sci	24(10)		2023		
53539	37222778	Yang L., Lei L., Wang J., Zheng H., Xin W., Liu H., Zou D.	qCTB7 positively regulates cold tolerance at booting stage in rice.	Theor. Appl. Genet.	136(6)	135	2023	CTB7	qCTB7, OsCTB7
53540	37177961	Li L.F., Wen W.F., Xu Z.S., Chen Y., Li Q., Li Y.C.	[Effects of Silicon Application on Arsenic Sequestration in Iron Plaque and Arsenic Translocation in Rice].	Huan Jing Ke Xue	44(5)	2899-2907	2023		
53541	37299125	Naithani S., Mohanty B., Elser J., D'Eustachio P., Jaiswal P.	Biocuration of a Transcription Factors Network Involved in Submergence Tolerance during Seed Germination and Coleoptile Elongation in Rice (<i>Oryza sativa</i>).	Plants (Basel)	12(11)		2023	WRKY74,WRKY1,YAB6,WRKY24,HOX12,WRKY55,WRKY16,_,BSRD1,ERF61,LA1,BOP3,OSH15,TCP18,ONAC300,SUB1B,ERF67,MYB45,OSKN2,PCF8,ILI2,BBX17,WRKY71,DCA1,ERF66,NAC1,_,_,WRKY8,OSH1,WRKY70	OsWRKY74,OsWRKY1, OsWRKY1v2,OsYAB6, OsYAB5,OsWRKY24,Oshox12, OsHox12,OsWRKY55,OsWRKY16,R2R3-MYB, OsMYB55/61-L,  MYB55/61-L,  OsMYB55,  OsMYB61-L, MYB55,  MYB61-L, OsMYB61L, MYB61L, OsMYB61b, MYB61b, Os2R_MYB53, 2R_MYB53, OsMYB2P-1, MYB2P-1,ZFP36, OsZFP36, OsBSRD1, Bsr-d1, BSR-D1, DLN91, OsDLN91,OsERF#061, OsERF061, OsERF61, AP2/EREBP#093, AP2/EREBP93,OsLa1,NH5, OsNH5, OsBOP3,  OsBTBA6, BTBA6,OSH15, OsH15, OSKN3, Oskn3, HOS3, D6, d6, OSH15/Oskn3, HB253, H15, OsKNOX3, KNOX3,OsTCP18,ONAC077, NAC77, OsNAC77, NAC300, OsNAC300, ONAC132, NAC132, OsNAC132, DLN250, OsDLN250,Sub1B, OsSUB1B, OsERF#063, OsERF063, ERF063, OsERF63, ERF63, AP2/EREBP#166, AP2/EREBP166,OsERF#067, OsERF067, OsERF67, AP2/EREBP#076, AP2/EREBP76,OsMPH1, MPH1, OsMYB45, DLN171, OsDLN171, OsMYB-R1, MYB-R1, CRPG17, OsCRPG17,OsKn2, OsH71, HOS9, OSH71, OSH71/Oskn2,OsPCF8,OsILI2, OsbHLH186, bHLH186, ATAC2/ILI2, ATAC2, OsATAC2,OsBBX17, OsL, OsCCT20, CCT20, OsCOL16, COL16,OsWRKY71, WRKY-71,OsDCA1, DST1, OsDST1,  OsRING161, RING161,OsERF#066, OsERF066, OsERF66, AP2/EREBP#030, AP2/EREBP30, EREBP30,OsNAC1, ONAC027, ONAC27, NAC27, OMTN1, OsNAC1/ONAC027, DLN60, OsDLN60, OsORE1,OsMYB55/61, OsMYB55, MYB55, OsMYB61, MYB61, OsMYB61a, MYB61a, Os2R_MYB5, 2R_MYB5 ,R2R3-MYB,OsWRKY8,OSKN1, Oskn1, OsKN1, OSH1/Oskn1, HB75,OsWRKY70
53542	37202578	Yang L., Liu H., Lei L., Wang J., Zheng H., Xin W., Zou D.	Combined QTL-sequencing, linkage mapping, and RNA-sequencing identify candidate genes and KASP markers for low-temperature germination in Oryza sativa L. ssp. Japonica.	Planta	257(6)	122	2023		
53543	37299141	Wang R., Zhou Z., Xiong M., Du M., Lin X., Liu C., Lu M., Liu Z., Chang Y., Liu E.	Mining salt tolerance SNP Loci and Prediction of Candidate Genes in the Rice Bud Stage by Genome-Wide Association Analysis.	Plants (Basel)	12(11)		2023		
53544	37248257	Tang S., Zhao Z., Liu X., Sui Y., Zhang D., Zhi H., Gao Y., Zhang H., Zhang L., Wang Y., Zhao M., Li D., Wang K., He Q., Zhang R., Zhang W., Jia G., Tang W., Ye X., Wu C., Diao X.	An E2-E3 pair contributes to seed size control in grain crops.	Nat Commun	14(1)	3091	2023		
53545	37223782	Wang F., Wang Y., Ying L., Lu H., Liu Y., Liu Y., Xu J., Wu Y., Mo X., Wu Z., Mao C.	Integrated transcriptomic analysis identifies coordinated responses to nitrogen and phosphate deficiency in rice.	Front Plant Sci	14	1164441	2023	NIGT1,NLP1,NRT2.1,SPX1,PT2	OsNIGT1, HINGE6, OsHINGE6,OsNLP1,OsNRT2.1, OsNRT2.2,OsSPX1,OsPT2, PTH1-2, OsPht1;2, PHT1;2, OsPHT1;2
53546	37239430	Li B., Chen Z., Chen H., Wang C., Song L., Sun Y., Cai Y., Zhou D., Ouyang L., Zhu C., He H., Peng X.	Stacking Multiple Genes Improves Resistance to <i>Chilo suppressalis</i>, <i>Magnaporthe oryzae</i>, and <i>Nilaparvata lugens</i> in Transgenic Rice.	Genes (Basel)	14(5)		2023		
53547	37372320	Zhou M., Deng X., Jiang Y., Zhou G., Chen J.	Genome-Wide Identification and an Evolution Analysis of Tonoplast Monosaccharide Transporter (<i>TMT</i>) Genes in Seven Gramineae Crops and Their Expression Profiling in Rice.	Genes (Basel)	14(6)		2023		
53548	37249047	Bai F., Ma H., Cai Y., Shahid M.Q., Zheng Y., Lang C., Chen Z., Wu J., Liu X., Wang L.	Natural Allelic Variation in GRAIN SIZE.AND WEIGHT 3 of Wild Rice Regulates the GRAIN SIZE.and Weight.	Plant Physiol.			2023	GLN1;3,GS5,RAC1,GSW3,LHS1,RGG2	OsGLN1;3, OsGS1;3, GS1;3,OsSCP26, SCP26, OsGS5,OsRAC1, OsRac1, Os Rac1, Rac1, Os-Rac1,OsGSW3,OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO, OsLHS1, OsLG3b, LG3b, qLGY3, LGY3, DLN80, OsDLN80, OLR, OsOLR, GW3p6, OsGW3p6, OsMADS1GW3p6, MADS1GW3p6, qLGY3/OsLG3b/GW3p6,OsRGG2
53549	37275250	Shanmugam A., Manivelan K., Deepika K., Nithishkumar G., Blessy V., Monihasri R.B., Nivetha D., Roshini A., Sathya P., Pushpa R., Manimaran R., Subrahmaniyan K., Sassikumar D., Suresh R.	Unraveling the genetic potential of native rice (<i>Oryza sativa</i> L.) landraces for tolerance to early-stage submergence.	Front Plant Sci	14	1083177	2023		
53550	37221989	Xing M.Q., Chen S.H., Zhang X.F., Xue H.W.	Rice OsGA2ox9 regulates seed GA metabolism and dormancy.	Plant Biotechnol. J.			2023		
53551	37151997	Pan J.Y., Wang C.B., Nong J.L., Xie Q.L., Shen T.M.	Plant growth-promoting rhizobacteria are important contributors to rice yield in karst soils.	3 Biotech	13(5)	158	2023		
53552	36733191	Chu J., Wang L., Cho J.	PopRice extrachromosomal DNA sponges ABSCISIC ACID-INSENSITIVE 5 in rice seed-to-seedling transition.	Plant Physiol.	192(1)	56-59	2023		
53553	36843039	Wang J., Tan M., Wang X., Jia L., Wang M., Huang A., You L., Li C., Zhang Y., Zhao Y., Wang G.	WUS-RELATED HOMEOBOX 14 boosts de novo plant shoot regeneration.	Plant Physiol.	192(2)	748-752	2023	WOX8	OsWOX8, Os WOX8, OsWOX13, WOX13, OsWOX9B
53554	37186469	Wang L., Fu J., Shen Q., Wang Q.	OsWRKY10 extensively activates multiple rice diterpenoid phytoalexin biosynthesis genes to enhance rice blast resistance.	Plant J.	115(3)	758-771	2023		
53555	37299128	Sajeevan T., Mondoni A., Wijayasinghe M., Jayasuriya G., Kumarage M., Orsenigo S.	Towards a More Efficient In and Ex Situ Conservation of Sri Lankan Wild Rice Species.	Plants (Basel)	12(11)		2023		
53556	37324692	Wang Y., Liu H., Meng Y., Liu J., Ye G.	Validation of genes affecting rice mesocotyl length through candidate association analysis and identification of the superior haplotypes.	Front Plant Sci	14	1194119	2023		
53557	37236064	Cheng J., Zhang S., Yi Y., Qin Y., Chen Z.H., Deng F., Zeng F.	Hydrogen peroxide reduces root cadmium uptake but facilitates root-to-shoot cadmium translocation in rice through modulating cadmium transporters.	Plant Physiol. Biochem.	200	107754	2023		
53558	37010912	Nag S., Pramanik K., Chattopadhyay M.K., Malpaharia P., Chandra S.K., Banerjee P.	A strategically synthesized arseno-discriminatory tetra-phenoxido hetero-trinuclear complex envisioned for the recognition of iAs and oAs from <i>Oryza</i> sp. and aquatic crustaceans.	Dalton Trans	52(19)	6290-6299	2023		
53559	37367547	Solanki S., Gupta S., Kapoor R., Varma A.	Chemically Synthesized AgNPs and <i>Piriformospora</i><i>indica</i> Synergistically Augment Nutritional Quality in Black Rice.	J Fungi (Basel)	9(6)		2023		
53560	37165147	Haque M.A., Simo, Prodhan M.Y., Ghosh S., Hossain M.S., Rahman A., Sarker U.K., Haque M.A.	Enhanced rice plant (BRRI-28) growth at lower doses of urea caused by diazinon mineralizing endophytic bacterial consortia and explorations of relevant regulatory genes in a Klebsiella sp. strain HSTU-F2D4R.	Arch. Microbiol.	205(6)	231	2023		
53561	37150617	Shimada H., Tanaka K.	Rice SUMOs and unification of their names.	Genes Genet. Syst.	98(1)	1-7	2023		
53562	37062704	Balbuena-Hern&#xe1;ndez L., Miranda-Ar&#xe1;mbula M., Merino-Montiel P., Carrasco-Carballo A., Sandoval-Ram&#xed;rez J.	22-Oxocholestanes SPGP4 and SPGP8: in Silico and in Vitro Study as Activators of Plant Growth Promotion.	Chem. Biodivers.	20(5)	e202201243	2023		
53563	37229127	Palanna K.B., Vinaykumar H.D., Prasanna S.K., Rajashekara H., Devanna B.N., Anilkumar C., Jeevan B., Raveendra H.R., Khan F., Bhavana C.H.S., Upadhyay V., Patro TSSK., Rawat L., Rajesh M., Saravanan P.T., Netam P., Rajesha G., Das I.K., Patil H.E., Jain A.K., Saralamma S., Nayaka S.C., Prakash G., Nagaraja T.E.	Exploring the diversity of virulence genes in the <i>Magnaporthe</i> population infecting millets and rice in India.	Front Plant Sci	14	1131315	2023		
53564	37221659	Wu H.M., Xie D.J., Jia P.F., Tang Z.S., Shi D.Q., Shui G.H., Wang G.D., Yang W.C.	Homeostasis of flavonoids and triterpenoids most likely modulates starch metabolism for pollen tube penetration in rice.	Plant Biotechnol. J.			2023		
53565	37176958	Zhang R.P., Zhou N.N., Ashen R.G., Zhou L., Feng T.Y., Zhang K.Y., Liao X.H., Aer L.S., Shu J.C., He X.W., Gao F., Ma P.	Effect of Sowing Date on the Growth Characteristics and Yield of Growth-Constrained Direct-Seeding Rice.	Plants (Basel)	12(9)		2023		
53566	37245171	Shafi A., Khan R.S., Mir S., Khan G.H., Masoodi K.Z., Sofi N.R., Mohidin F.A., Lone J.A., Shikari A.B.	Gene expression of near-isogenic lines (NILs) carrying blast resistance genes Pi9 and Pi54 in the background of rice cultivar Mushk Budji.	Mol. Biol. Rep.	50(7)	5901-5915	2023		
53567	37383734	Sz&#xe9;kely &#xc1;., Szal&#xf3;ki T., Lantos C., Pauk J., Jancs&#xf3; M.	Data of germination ability of tetraploid rice lines under multiple stress factors.	Data Brief	48	109235	2023		
53568	37408207	Dash P.K., Gupta P., Sreevathsa R., Pradhan S.K., Sanjay T.D., Mohanty M.R., Roul P.K., Singh N.K., Rai R.	Phylogenomic Analysis of micro-RNA Involved in Juvenile to Flowering-Stage Transition in Photophilic Rice and Its Sister Species.	Cells	12(10)		2023		
53569	37260593	Sheraz A., Zhu H., Dong Q., Wang T., Zong S., Wang H., Ge L., Wu T.	The superoxide dismutase (SOD) genes family mediates the response of <i>Nilaparvata lugens</i> to jinggangmycin and sugar.	Front Physiol	14	1197395	2023		
53570	37222817	Xiao X., Hu A.Y., Dong X.Y., Shen R.F., Zhao X.Q.	Involvement of the 4-coumarate:coenzyme A ligase 4CL4 in rice phosphorus acquisition and rhizosphere microbe recruitment via root growth enlargement.	Planta	258(1)	7	2023		
53571	37198224	Hu S., Ren H., Song Y., Liu F., Qian L., Zuo F., Meng L.	Analysis of volatile compounds by GCMS reveals their rice cultivars.	Sci Rep	13(1)	7973	2023		
53572	37240455	Ying Y., Xu F., Zhang Z., Tappiban P., Bao J.	Correction: Ying et al. Dynamic Change in Starch Biosynthetic Enzymes Complexes during Grain-Filling Stages in BEIIb Active and Deficient Rice. <i>Int. J. Mol. Sci.</i> 2022, <i>23</i>, 10714.	Int J Mol Sci	24(10)		2023		
53573	37137260	Du S., Wang X., Zhou Z., Zhang T., Ding C.	Kinetic characteristics of and critical stages for mercury accumulation in rice (Oryza sativa L.).	Ecotoxicol. Environ. Saf.	258	114968	2023		
53574	37240056	Zhang H., Chen G., Xu H., Jing S., Jiang Y., Liu Z., Zhang H., Wang F., Hu X., Zhu Y.	Transcriptome Analysis of Rice Embryo and Endosperm during Seed Germination.	Int J Mol Sci	24(10)		2023		
53575	37224116	Nguyen D.Q., Nguyen N.L., Nguyen V.T., Tran T.H.G., Nguyen T.H., Nguyen T.K.L., Nguyen H.H.	Comparative analysis of microRNA expression profiles in shoot and root tissues of contrasting rice cultivars (Oryza sativa L.) with different salt stress tolerance.	PLoS ONE	18(5)	e0286140	2023		
53576	37145322	Walitang D.I., Roy Choudhury A., Subramanian P., Lee Y., Choi G., Cho K., Yun S.H., Jamal A.R., Woo S.H., Sa T.	Microbe-Responsive Proteomes During Plant-Microbe Interactions Between Rice Genotypes and the Multifunctional Methylobacterium oryzae CBMB20.	Rice (N Y)	16(1)	23	2023		
53577	37160782	Jim&#xe9;nez JC., Pedersen O.	Mitigation of Greenhouse Gas Emissions from Rice via Manipulation of Key Root Traits.	Rice (N Y)	16(1)	24	2023		
53578	37287712	Zhou H., Deng X.W., He H.	Gene expression variations and allele-specific expression of two rice and their hybrid in caryopses at single-nucleus resolution.	Front Plant Sci	14	1171474	2023		
53579	37229121	Cheng H., Liu L., Zhou Y., Deng K., Ge Y., Hu X.	TSPTFBS 2.0: trans-species prediction of transcription factor binding sites and identification of their core motifs in plants.	Front Plant Sci	14	1175837	2023		
53580	37248636	Jalilian A., Bagheri A., Chalvon V., Meusnier I., Kroj T., Kakhki A.M.	The RLCK subfamily VII-4 controls pattern-triggered immunity and basal resistance to bacterial and fungal pathogens in rice.	Plant J.			2023		
53581	37129647	Yang Y., Zhang Y., Li J., Xu P., Wu Z., Deng X., Pu Q., Lv Y., Elgamal WHAS., Maniruzzaman S., Deng W., Zhou J., Tao D.	Three QTL from Oryza meridionalis Could Improve Panicle Architecture in Asian Cultivated Rice.	Rice (N Y)	16(1)	22	2023		
53582	36881783	He W., Li W., Luo X., Tang Y., Wang L., Yu F., Lin Q.	Rice FERONIA-LIKE RECEPTOR 3 and 14 affect grain quality by regulating redox homeostasis during endosperm development.	J. Exp. Bot.	74(10)	3003-3018	2023		
53583	37212977	Andreo-Jimenez B., Te Beest DE., Kruijer W., Vannier N., Kadam N.N., Melandri G., Jagadish S.V.K., van der Linden G., Ruyter-Spira C., Vandenkoornhuyse P., Bouwmeester H.J.	Genetic Mapping of the Root Mycobiota in Rice and its Role in drought tolerance.	Rice (N Y)	16(1)	26	2023		
53584	37147554	Wang X., Liu Y., Hao C., Li T., Majeed U., Liu H., Li H., Hou J., Zhang X.	wheat NAC-A18 regulates grain starch and storage proteins synthesis and affects grain weight.	Theor. Appl. Genet.	136(6)	123	2023		
53585	36960567	Karavolias N.G., Patel-Tupper D., Seong K., Tjahjadi M., Gueorguieva G.A., Tanaka J., Gallegos Cruz A., Lieberman S., Litvak L., Dahlbeck D., Cho M.J., Niyogi K.K., Staskawicz B.J.	Paralog editing tunes rice stomatal density to maintain photosynthesis and improve drought tolerance.	Plant Physiol.	192(2)	1168-1182	2023	EPFL10,STOMAGEN	OsEPFL10,OsSTOMAGEN, OsEPFL9, EPFL9, OsEPFL10, EPFL10
53586	37231212	Sun H., Yuan Z., Li F., Zhang Q., Peng T., Li J., Du Y.	Mapping of qChalk1 controlling grain chalkiness in japonica rice.	Mol. Biol. Rep.	50(7)	5879-5887	2023		
53587	37235029	Xu S., Cui J., Cao H., Liang S., Ma T., Liu H., Wang J., Yang L., Xin W., Jia Y., Zou D., Zheng H.	Identification of candidate genes for salinity tolerance in <i>Japonica</i> rice at the seedling stage based on genome-wide association study and linkage mapping.	Front Plant Sci	14	1184416	2023		
53588	36912079	Yu Z., Wu Z., Li Y., Hao Q., Cao X., Blaha G.M., Lin J., Lu G.	Structural basis of a two-step tRNA recognition mechanism for plastid glycyl-tRNA synthetase.	Nucleic Acids Res.	51(8)	4000-4011	2023		
53589	36756704	Xu Q., Wang Y., Yue Y., Chen Z., Zhou D.X., Zhao Y.	Withdrawn as duplicate: Transcription factor WOX11 regulates protein translation via ribosome protein acetylation in rice roots.	Plant Physiol.	192(1)	681	2023		
53590	37128176	Huang L., Xiao Y., Zhao W., Rao Y., Shen H., Gu Z., Fan X., Li Q., Zhang C., Liu Q.	Creating high-resistant starch rice by simultaneous editing of SS3a and SS3b.	Plant Biotechnol. J.			2023		
53591	37198524	Lin G., Ma L., He X., Tang J., Wang L.	Gene regulation and ionome homeostasis in rice plants in response to arsenite stress: potential connection between transcriptomics and ionomics.	Biometals			2023		
53592	36897026	Lan J., Lin Q., Zhou C., Liu X., Miao R., Ma T., Chen Y., Mou C., Jing R., Feng M., Nguyen T., Ren Y., Cheng Z., Zhang X., Liu S., Jiang L., Wan J.	Young Leaf White Stripe encodes a P-type PPR protein required for chloroplast development.	J Integr Plant Biol	65(7)	1687-1702	2023	YLWS	OsYLWS
53593	37154202	Xu Y., Bai L., Liu M., Liu Y., Peng S., Hu P., Wang D., Liu Q., Yan S., Gao L., Wang X., Ning Y., Zuo S., Zheng W., Liu S., Xiang W., Wang G.L., Kang H.	Identification of two novel rice S genes through combination of association and transcription analyses with gene-editing technology.	Plant Biotechnol. J.	21(8)	1628-1641	2023	RNG3,RNG1	OsRNG3,OsBBX4, BBX4, OsSTH, STH, OsRNG1
53594	37249052	Chen Y., Guo Y., Xie X., Wang Z., Miao L., Yang Z., Jiao Y., Xie C., Liu J., Hu Z., Xin M., Yao Y., Ni Z., Sun Q., Peng H., Guo W.	Pangenome-based trajectories of intracellular gene transfers in Poaceae unveil high cumulation in Triticeae.	Plant Physiol.			2023		
53595	37154484	Sun L., Cao Y., Li Z., Liu Y., Yin X., Deng X.W., He H., Qian W.	Conserved H3K27me3-associated chromatin looping mediates physical interactions of gene clusters in plants.	J Integr Plant Biol			2023		
53596	37166615	Samtani H., Sharma A., Khurana P.	Ectopic overexpression of TaHsfA5 promotes thermomorphogenesis in Arabidopsis thaliana and thermotolerance in Oryza sativa.	Plant Mol. Biol.	112(4-5)	225-243	2023		
53597	37298196	Cao J., Liu H., Tan S., Li Z.	Transcription Factors-Regulated leaf senescence: Current Knowledge, Challenges and Approaches.	Int J Mol Sci	24(11)		2023		
53598	37305415	Song Z., Zheng J., Zhao Y., Yin J., Zheng D., Hu H., Liu H., Sun M., Ruan L., Liu F.	Population genomics and pathotypic evaluation of the bacterial leaf blight pathogen of rice reveals rapid evolutionary dynamics of a plant pathogen.	Front Cell Infect Microbiol	13	1183416	2023		
53599	37156701	Cantos C.F., dePamphilis CW., Assmann S.M.	Extra-large G proteins have extra-large effects on agronomic traits and stress tolerance in maize and rice.	Trends Plant Sci.			2023		
53600	37247124	Banu M.S.A., Huda K.M.K., Harun-Ur-Rashid M., Parveen S., Tuteja N.	A DEAD box helicase Psp68 positively regulates salt stress responses in marker-free transgenic rice plants.	Transgenic Res.			2023		
53601	37256847	Gann P.J.I., Dharwadker D., Cherati S.R., Vinzant K., Khodakovskaya M., Srivastava V.	Targeted mutagenesis of the vacuolar H+ translocating pyrophosphatase gene reduces grain chalkiness in rice.	Plant J.			2023		
53602	37293679	Sharma N., Dabral S., Tyagi J., Yadav G., Aggarwal H., Joshi N.C., Varma A., Koul M., Choudhary D.K., Mishra A.	Interaction studies of <i>Serendipita indica</i> and <i>Zhihengliuella</i> sp. ISTPL4 and their synergistic role in growth promotion in rice.	Front Plant Sci	14	1155715	2023		
53603	37238696	Raineri J., Caraballo L.N., G&#xf3;mez M., Chan R.L.	The Transcription Factor HaHB11 Boosts Grain Set and Yield in Rice Plants, Allowing Them to Approach Their Ideal Phenotype.	Biomolecules	13(5)		2023		
53604	37062127	Prerostova S., Rezek J., Jarosova J., Lacek J., Dobrev P., Marsik P., Gaudinova A., Knirsch V., Dolezal K., Plihalova L., Vanek T., Kieber J., Vankova R.	Cytokinins act synergistically with heat acclimation to enhance rice thermotolerance affecting hormonal dynamics, gene expression and volatile emission.	Plant Physiol. Biochem.	198	107683	2023		
53605	37223787	Hirakawa T., Tanno S., Ohara K.	N-acetylglutamic acid alleviates oxidative stress based on histone acetylation in plants.	Front Plant Sci	14	1165646	2023		
53606	36894770	Hashemipetroudi S.H., Ghorbani H., Rostami M., Rezaei A., Goodwin P.H., Kuhlmann M.	Selection of reference genes for RT-qPCR analysis of rice with Rhizoctonia solani infection and biocontrol PGPR/KSi application.	Mol. Biol. Rep.	50(5)	4225-4237	2023		
53607	36980991	Thulasinathan T., Ayyenar B., Kambale R., Manickam S., Chellappan G., Shanmugavel P., Narayanan M.B., Swaminathan M., Muthurajan R.	Marker Assisted Introgression of Resistance Genes and Phenotypic Evaluation Enabled Identification of Durable and Broad-Spectrum Blast Resistance in Elite Rice Cultivar, CO 51.	Genes (Basel)	14(3)		2023		
53608	37033767	Jing Y., Wenbo C., Zhifeng H., Yan X., XinFang Z., Mi W., RuHui W., Wenqiang S., Jun Z., QianNan D., Guanghua H., Yunfeng L., Ting Z.	<i>DEGENERATED LEMMA</i> (<i>DEL</i>) regulates lemma development and affects rice grain yield.	Physiol Mol Biol Plants	29(3)	335-347	2023		
53609	37048277	Yu J., Zhou Z., Xu X., Ren H., Gong M., Ji Z., Liu S., Hu Z., Mao J.	Differentiating <i>Huangjiu</i> with Varying Sugar Contents from Different Regions Based on Targeted Metabolomics Analyses of Volatile Carbonyl Compounds.	Foods	12(7)		2023		
53610	36981216	Yu Y., Li M., Li C., Niu M., Dong H., Zhao S., Jia C., Xu Y.	Accelerated Accumulation of &#x3b3;-Aminobutyric Acid and Modifications on Its Metabolic Pathways in Black Rice Grains by Germination under Cold Stress.	Foods	12(6)		2023		
53611	36982870	Chen H., Wang Q., Fan M., Zhang X., Feng P., Zhu L., Wu J., Cheng X., Wang J.	A Single Nucleotide Variation of <i>CRS2</i> Affected the Establishment of Photosynthetic System in Rice.	Int J Mol Sci	24(6)		2023	PSAA,PSBA,LHCB2.1,YGL10,HEMA,CRS2,V1,V2,CAB2R,PETA	PsaA, psaA, PsAA1, psaA1,PsbA, psbA, OsPsbA, PSBD1, OsPSBD1, psbD1,LHCB, LHCP II, Lhcb2, OsLhcb2, Lhcb2.1, OsLhcb2.1 ,CAO, OsCAO, CAO1, OsCAO1, Oslls1, Lls1, DVR, PGL,HEMA1, OsHEMA, GluTR, OsHEMA1, hemA,OsCRS2,v1, NUS1,OsV1, OsNUS1,v2, mGmk, GMK, Gmk, pt/mtGK, pt/mt GK, OsV2, OsGMK,Oscab2R, CAB-2, OsLhcp, Lhcb1, Lhcb1a, OsLhcb1, OsLhcb1a ,petA, Cytf, cytF, Cyt f, OsPETA
53612	37018864	Sheng H., Li Y., Feng J., Liu Y.	Regulation of thermodynamics and kinetics of silica nucleation during the silicification process in higher plants.	Plant Physiol. Biochem.	198	107674	2023		
53613	36906137	Fan X., Wang P., Qi F., Hu Y., Li S., Zhang J., Liang L., Zhang Z., Liu J., Xiong L., Xing Y.	The CCT transcriptional activator Ghd2 constantly delays the heading date by upregulating CO3 in rice.	J Genet Genomics			2023	RFT1,HD3A,WRKY104,EF1,CO3,BBX8	FT-L 3, OsFTL3, FTL3, FT-L3, RFT, OsRFT1,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,OsWRKY104, CRPG32, OsCRPG32,Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,OsB, OsCO3, OsBBX27, OsCO3/OsB, OsCCT31, CO3, BBX27, CCT31,OsBBX8, OsK, OsCCT09, OsGhd2, OsK/Ghd2, CCT09, Ghd2
53614	36517254	Cai Z., Wang G., Li J., Kong L., Tang W., Chen X., Qu X., Lin C., Peng Y., Liu Y., Deng Z., Ye Y., Wu W., Duan Y.	Thermo-Sensitive Spikelet Defects 1 acclimatizes rice spikelet initiation and development to high temperature.	Plant Physiol.	191(3)	1684-1701	2023		
53615	36974032	Takai T., Taniguchi Y., Takahashi M., Nagasaki H., Yamamoto E., Hirose S., Hara N., Akashi H., Ito J., Arai-Sanoh Y., Hori K., Fukuoka S., Sakai H., Tokida T., Usui Y., Nakamura H., Kawamura K., Asai H., Ishizaki T., Maruyama K., Mochida K., Kobayashi N., Kondo M., Tsuji H., Tsujimoto Y., Hasegawa T., Uga Y.	MORE PANICLES 3, a natural allele of OsTB1/FC1, impacts rice yield in paddy fields at elevated CO2 levels.	Plant J.	114(4)	729-742	2023	FC1	fc1, OsTB1, tb1, OsTB1/FC1, Os TB1, TB1, OsFC1, MP3, OsMP3
53616	36527431	Alsantely A., Gutaker R., Navarrete Rodr&#xed;guez ME., Arrieta-Espinoza G., Fuchs E.J., Costa de Oliveira A., Tohme J., Zuccolo A., Wing R.A., Fornasiero A.	The International Oryza Map Alignment Project (IOMAP): the Americas-past achievements and future directions.	J. Exp. Bot.	74(5)	1331-1342	2023		
53617	37313528	Shi T., Gao Y., Xu A., Wang R., Lyu M., Sun Y., Chen L., Liu Y., Luo R., Wang H., Liu J.	A fast breeding strategy creates fragrance- and anthocyanin-enriched rice lines by marker-free gene-editing and hybridization.	Mol. Breed.	43(4)	23	2023		
53618	36987051	Kumar M., Singh R.P., Jena D., Singh V., Rout D., Arsode P.B., Choudhary M., Singh P., Chahar S., Samantaray S., Mukherjee A.K., Mohan C., Bohra A., Das G., Balo S., Singh O.N., Verma R.	Marker-Assisted Improvement for Durable Bacterial Blight Resistance in Aromatic Rice Cultivar HUR 917 Popular in Eastern Parts of India.	Plants (Basel)	12(6)		2023		
53619	36931088	Li X., Zhou M., Shi F., Meng B., Liu J., Mi Y., Dong C., Su H., Liu X., Wang F., Wei Y.	Influence of arbuscular mycorrhizal fungi on mercury accumulation in rice (Oryza sativa L.): From enriched isotope tracing perspective.	Ecotoxicol. Environ. Saf.	255	114776	2023		
53620	36535001	Qin H., Wang J., Zhou J., Qiao J., Li Y., Quan R., Huang R.	Abscisic acid promotes auxin biosynthesis to inhibit primary root elongation in rice.	Plant Physiol.	191(3)	1953-1967	2023		
53621	36976398	Das S., Kundu S., Meena K., Jha R.K., Varma A., Bahuguna R.N., Tripathi S.	Seed biopriming with potential bioagents influences physiological processes and plant defense enzymes to ameliorate sheath blight induced yield loss in rice (Oryza sativa L.).	World J. Microbiol. Biotechnol.	39(5)	136	2023		
53622	37168816	Agata A., Ashikari M., Sato Y., Kitano H., Hobo T.	Designing rice panicle architecture via developmental regulatory genes.	Breed. Sci.	73(1)	86-94	2023	APO1,PRL5,GN1A	apo1(t), apo1, SCM2, SCM2/APO1, OsFbox321, Os_F0393, Pbl6/APO1, Pbl6, OsPbl6,  OsFBX202, FBX202,OsGA20ox4, ga20ox4, GA20ox2, Prl5, Prl5/GA20ox4, OsPrl5,Gn1a, OsCKX2, CKX2, ckx2, Gn1a/OsCKX2, Os CKX2, CKX2/Gn1a
53623	36913028	Zeng X., Ran S., Shen X., Zhang C., Xu H., Qi Y., Ren X., Ma L.	Responses of Rice and Related Cadmium Transporter Genes to the Passivating Microbial Agent MBLHAP.	Curr. Microbiol.	80(5)	134	2023		
53624	36973415	Giaume F., Bono G.A., Martignago D., Miao Y., Vicentini G., Toriba T., Wang R., Kong D., Cerise M., Chiriv&#xec; D., Biancucci M., Khahani B., Morandini P., Tameling W., Martinotti M., Goretti D., Coupland G., Kater M., Brambilla V., Miki D., Kyozuka J., Fornara F.	Two florigens and a florigen-like protein form a triple regulatory module at the shoot apical meristem to promote reproductive transitions in rice.	Nat Plants	9(4)	525-534	2023		
53625	36870026	Banerjee A., Roychoudhury A.	Bio-priming with a Novel Plant Growth-Promoting Acinetobacter indicus Strain Alleviates Arsenic-Fluoride Co-toxicity in Rice by Modulating the Physiome and Micronutrient Homeostasis.	Appl. Biochem. Biotechnol.			2023		
53626	36963188	Hasanuzzaman M., Raihan M.R.H., Siddika A., Rahman K., Nahar K.	Supplementation with Ascophyllum nodosum extracts mitigates arsenic toxicity by modulating reactive oxygen species metabolism and reducing oxidative stress in rice.	Ecotoxicol. Environ. Saf.	255	114819	2023		
53627	36872602	Shi X., Xiong Y., Zhang K., Zhang Y., Zhang J., Zhang L., Xiao Y., Wang G.L., Liu W.	The ANIP1-OsWRKY62 module regulates both basal defense and Pi9-mediated immunity against Magnaporthe oryzae in rice.	Mol Plant	16(4)	739-755	2023	PI9,WRKY62,CRTINTP	Pi9(t), Pi9(t)*, Pi9, Pi-9(t),OsWRKY62, OsWRKY62.1, OsWRKY62.2, XB10, OsWRKY62-1, OsWRKY62-2,OsCRTintP, ANIP1, OsANIP1
53628	36772852	Liu N., Huang M., Liang X., Cao M., Lun Z., Zhang Y., Yang J., Bhadauria V., Zhao W., Yan J., Peng Y.L., Lu X.	Magnaporthe oryzae endoplasmic reticulum membrane complex regulates the biogenesis of membrane proteins for pathogenicity.	New Phytol.	238(3)	1163-1181	2023		
53629	36891587	Prasad C T M., Kodde J., Angenent G.C., Hay F.R., McNally K.L., Groot S.P.C.	Identification of the rice Rc gene as a main regulator of seed survival under dry storage conditions.	Plant Cell Environ.	46(6)	1962-1980	2023		
53630	37050133	Chen T., Xiao W., Huang C., Zhou D., Liu Y., Guo T., Chen Z., Wang H.	Fine Mapping of the Affecting Tillering and Plant Height Gene <i>CHA-1</i> in Rice.	Plants (Basel)	12(7)		2023	THIS1,D17,D14,D10,D3	OsTHIS1, CHA-1, OsCHA-1,d17(t), dwf14, d17, htd1, OsCCD7, CCD7, D17/HTD1, HTD1, OsHTD1, OsD17,d14(d10), dwf13, d10, d14, D88, HTD2, OsHTD2, OsD14, qPPB3, D88/D14, HTD4,d10(d15,d16), d16, d15, dwf9, d10, OsCCD8b, OsCCD8, CCD8, OsD10,d3, dwf3, D3/OsMAX2, Os_F0760, SOL1, OsORE9, ORE9, MAX2, OsRFPH2-10, RFPH2-10, OsD3,  OsFBL27, FBL27
53631	37047087	Chen D., Zou W., Zhang M., Liu J., Chen L., Peng T., Ye G.	Genome-Wide Association Study for seed dormancy Using Re-Sequenced Germplasm under Multiple Conditions in Rice.	Int J Mol Sci	24(7)		2023		
53632	36987053	Honda S., Yamazaki Y., Mukada T., Cheng W., Chuba M., Okazaki Y., Saito K., Oikawa A., Maruyama H., Wasaki J., Wagatsuma T., Tawaraya K.	Lipidome Profiling of Phosphorus Deficiency-Tolerant Rice Cultivars Reveals Remodeling of Membrane Lipids as a Mechanism of Low P Tolerance.	Plants (Basel)	12(6)		2023		
53633	36861329	Verma V., Boora N., Nayar S., Kumar G., Thapliyal S., Ankur, Khurana R., Gawande G., Kapoor M., Kapoor S.	Ca2+ -Calmodulin regulates nuclear translocation of the rice seed-specific MADS-box transcription factor OsMADS29.	FEBS J.	290(14)	3595-3613	2023		
53634	37047112	Karnatam K.S., Chhabra G., Saini D.K., Singh R., Kaur G., Praba U.P., Kumar P., Goyal S., Sharma P., Ranjan R., Sandhu S.K., Kumar R., Vikal Y.	Genome-Wide Meta-Analysis of QTLs Associated with Root Traits and Implications for Maize Breeding.	Int J Mol Sci	24(7)		2023		
53635	36987003	Zhong Z., Wu Y., Zhang P., Hu G., Fu D., Yu G., Tong H.	Transcriptomic Analysis Reveals Panicle Heterosis in an Elite Hybrid Rice ZZY10 and Its Parental Lines.	Plants (Basel)	12(6)		2023		
53636	37047036	Li G., Wu Y., Bai Y., Zhao N., Jiang Y., Li N., Lin X., Liu B., Xu C.	Patterns of Chromosomal Variation, Homoeologous Exchange, and Their Relationship with Genomic Features in Early Generations of a Synthetic Rice Segmental Allotetraploid.	Int J Mol Sci	24(7)		2023		
53637	36971843	Feng Y., Tang J., Liu R., Liu Y.G., Chen L., Xie Y.	Characterization and fine-mapping of a new Asian rice selfish genetic locus S58 in Asian-African rice hybrids.	Theor. Appl. Genet.	136(4)	87	2023		
53638	36987076	Peng P., Jiang H., Luo L., Ye C., Xiao Y.	Pyramiding of Multiple Genes to Improve Rice Blast Resistance of Photo-Thermo Sensitive Male Sterile Line, without Yield Penalty in Hybrid Rice Production.	Plants (Basel)	12(6)		2023		
53639	37313522	Zhang C., Yun P., Xia J., Zhou K., Wang L., Zhang J., Zhao B., Yin D., Fu Z., Wang Y., Ma T., Li Z., Wu D.	CRISPR/Cas9-mediated editing of <i>Wx</i> and <i>BADH2</i> genes created glutinous and aromatic two-line hybrid rice.	Mol. Breed.	43(4)	24	2023		
53640	36862074	Gao J., Zhao Y., Zhao Z., Liu W., Jiang C., Li J., Zhang Z., Zhang H., Zhang Y., Wang X., Sun X., Li Z.	RRS1 shapes robust root system to enhance drought resistance in rice.	New Phytol.	238(3)	1146-1162	2023		
53641	36879016	Wu C.J., Yuan D.Y., Liu Z.Z., Xu X., Wei L., Cai X.W., Su Y.N., Li L., Chen S., He X.J.	Conserved and plant-specific histone acetyltransferase complexes cooperate to regulate gene transcription and plant development.	Nat Plants	9(3)	442-459	2023		
53642	36859499	Meng F., Feng N., Zheng D., Liu M., Zhang R., Huang X., Huang A., Chen Z.	Exogenous Hemin alleviates NaCl stress by promoting photosynthesis and carbon metabolism in rice seedlings.	Sci Rep	13(1)	3497	2023		
53643	36894555	Mizobuchi R., Sugimoto K., Tsushima S., Fukuoka S., Tsuiki C., Endo M., Mikami M., Saika H., Sato H.	A MAPKKK gene from rice, RBG1res, confers resistance to Burkholderia glumae through negative regulation of ABA.	Sci Rep	13(1)	3947	2023	MKK3,RAB16B,RBG1	OsMKK3, OsMAPKK3, MAPKK3, OsMEK8a, MEK8a, OsMEK3, MEK3,rab21, OsLEA28, OsRAB16D, OsRab16d, Rab16d, OsRAB16b, XERO1, OsXERO1, OsRD22, RD22,OsRBG1
53644	36878274	Munir R., Jan M., Muhammad S., Afzal M., Jan N., Yasin M.U., Munir I., Iqbal A., Yang S., Zhou W., Gan Y.	Detrimental effects of Cd and temperature on rice and functions of microbial community in paddy soils.	Environ. Pollut.	324	121371	2023		
53645	36867321	Wang F., Xu H., Zhang L., Shi Y., Song Y., Wang X., Cai Q., He W., Xie H., Zhang J.	The lipoxygenase OsLOX10 affects seed longevity and resistance to saline-alkaline stress during rice seedlings.	Plant Mol. Biol.	111(4-5)	415-428	2023		
53646	36912930	Dong X., Chen L., Yang H., Tian L., Dong F., Chai Y., Qu L.Q.	Pho1 cooperates with DPE1 to control short maltooligosaccharide mobilization during starch synthesis initiation in rice endosperm.	Theor. Appl. Genet.	136(3)	47	2023		
53647	36982522	Liu Y., Wang F., Zhang A., Chen Z., Luo X., Kong D., Zhang F., Yu X., Liu G., Luo L.	Improvement of Salinity Tolerance in Water-Saving and Drought-Resistance Rice (WDR).	Int J Mol Sci	24(6)		2023		
53648	36987102	Huang X., Fan C., Xie D., Chen H., Zhang S., Chen H., Qin S., Fu T., He T., Gao Z.	Synergistic Effects of Water Management and Silicon Foliar Spraying on the Uptake and Transport Efficiency of Cadmium in Rice (<i>Oryza sativa</i> L.).	Plants (Basel)	12(6)		2023		
53649	36986915	Luo J.S., Guo B., He Y., Chen C.Z., Yang Y., Zhang Z.	Genome and Transcriptome Identification of a Rice Germplasm with High Cadmium Uptake and Translocation.	Plants (Basel)	12(6)		2023		
53650	36916843	Huang W., Xu J., Shi J., Qiu J.	First report of Rice panicle blight caused by Fusarium sporotrichioides in China.	Plant Dis.			2023		
53651	36986539	Ruiz-L&#xf3;pez FJ., Espinosa-Rodr&#xed;guez BA., Silva-Mares DA., Gonz&#xe1;lez-Mart&#xed;nez BE., L&#xf3;pez-Cabanillas Lomel&#xed; M., M&#xe9;ndez-L&#xf3;pez LF., V&#xe1;zquez-Rodr&#xed;guez JA.	In Silico Identification of Peptides with PPAR&#x3b3; Antagonism in Protein Hydrolysate from Rice (<i>Oryza sativa</i>).	Pharmaceuticals (Basel)	16(3)		2023		
53652	36862199	Fang J., Chun Y., Guo T., Ren M., Zhao J., Li X.	Rice kinesin-related protein STD1 and microtubule-associated protein MAP65-5 cooperatively control microtubule bundling.	Planta	257(4)	71	2023		
53653	36525532	Hu Z., Tang Z., Yang J., Bao S., Zhang Y., Ma L., Zheng Q., Yang F., Zhang D., Sun S., Hu Y.	Knockout of OsSWEET15 Impairs Rice Embryo Formation and Seed-Setting.	Plant Cell Physiol.	64(2)	258-268	2023		
53654	37028191	Fu Y., Zhong X., Lu C., Liang K., Pan J., Hu X., Hu R., Li M., Ye Q., Liu Y.	Growth, nutrient uptake and transcriptome profiling of rice seedlings in response to mixed provision of ammonium- and nitrate-nitrogen.	J. Plant Physiol.	284	153976	2023		
53655	36907094	Li X., Sun H.F., Fan J.H., Li Y.Y., Ma L.J., Wang L.L., Li X.M.	Transcriptome modulation by endophyte drives rice seedlings response to Pb stress.	Ecotoxicol. Environ. Saf.	254	114740	2023		
53656	37003962	Raza Q., Rashid M.A.R., Waqas M., Ali Z., Rana I.A., Khan S.H., Khan I.A., Atif R.M.	Genomic diversity of aquaporins across genus Oryza provides a rich genetic resource for development of climate resilient rice cultivars.	BMC Plant Biol.	23(1)	172	2023		
53657	37047538	Lee S., Rahman M.M., Nakanishi H., Nishizawa N.K., An G., Nam H.G., Jeon J.S.	Concomitant Activation of <i>OsNAS2</i> and <i>OsNAS3</i> Contributes to the Enhanced Accumulation of Iron and Zinc in Rice.	Int J Mol Sci	24(7)		2023		
53658	36982518	Zhao W., Geng H., Dan Z., Zeng Y., Wang M., Xu W., Hu Z., Huang W.	The Alpha Subunit of mitochondrial processing peptidase Participated in Fertility Restoration in Honglian-CMS Rice.	Int J Mol Sci	24(6)		2023		
53659	36958601	Liang Z., Wu Y., Guo Y., Wei S.	Addition of the T5 exonuclease increases the prime editing efficiency in plants.	J Genet Genomics			2023		
53660	36520996	Ding M., Zhu Y., Kinoshita T.	Stomatal properties of Arabidopsis cauline and rice flag leaves and their contributions to seed production and grain yield.	J. Exp. Bot.	74(6)	1957-1973	2023		
53661	36947285	Ahmadi N., Barry M.B., Frouin J., de Navascu&#xe9;s M., Toure M.A.	Genome Scan of Rice Landrace Populations Collected Across Time Revealed Climate Changes' Selective Footprints in the Genes Network Regulating Flowering Time.	Rice (N Y)	16(1)	15	2023		
53662	36894728	Wang Q., Yang S., Fan M., Feng P., Zhu L., Chen H., Wang J.	A natural variation in the promoter of gra117 affects carbon assimilation in rice.	Planta	257(4)	77	2023		
53663	37047061	Guo N., Tang S., Wang J., Hu S., Tang S., Wei X., Shao G., Jiao G., Sheng Z., Hu P.	Transcriptome and Proteome Analysis Revealed That Hormone and Reactive Oxygen Species Synergetically Regulate Dormancy of Introgression Line in Rice (<i>Oryza sativa</i> L.).	Int J Mol Sci	24(7)		2023		
53664	37050138	Park H.S., Lee C.M., Baek M.K., Jeong O.Y., Kim S.M.	Application of a Novel Quantitative Trait Locus Combination to Improve grain shape without Yield Loss in Rice (<i>Oryza sativa</i> L. spp. <i>japonica</i>).	Plants (Basel)	12(7)		2023		
53665	36965149	Tan W., Miao J., Xu B., Zhou C., Wang Y., Gu X., Liang S., Wang B., Chen C., Zhu J., Zuo S., Yang Z., Gong Z., You A., Wu S., Liang G., Zhou Y.	Rapid production of novel beneficial alleles for improving rice appearance quality by targeting a regulatory element of SLG7.	Plant Biotechnol. J.	21(7)	1305-1307	2023	RL9,GW7	rl9, SLL1/RL9, SLL1, OsSLL1, OsADD1, ADD1, KANADI1, AH2, OsAH2, CL1, OsCL1,GL7, OsGL7, OsGW7, qGW7, qGL7, SLG7, GL7/GW7/SLG7, qPY7, GL7/SLG7, Chalk7, OsChalk7
53666	36880506	Imran M., Shafiq S., Ashraf U., Qi J., Mo Z., Tang X.	Biosynthesis of 2-Acetyl-1-pyrroline in Fragrant Rice: Recent Insights into Agro-management, Environmental Factors, and Functional Genomics.	J. Agric. Food Chem.	71(10)	4201-4215	2023		
53667	36896580	Joshi G., Soe Y.P., Palanog A., Hore T.K., Nha C.T., Calayugan M.I., Inabangan-Asilo MA., Amparado A., Pandey I.D., Cruz P.C.S., Hernandez J.E., Swamy B.P.M.	Meta-QTL s and haplotypes for efficient zinc biofortification of rice.	Plant Genome		e20315	2023		
53668	36982632	He Y., Duan W., Xue B., Cong X., Sun P., Hou X., Liang Y.K.	Os&#x3b1;CA1 Affects Photosynthesis, Yield Potential, and Water Use Efficiency in Rice.	Int J Mol Sci	24(6)		2023	ALPHACA1,ALPHACA2	OsalphaCA1, alphaCA1,OsalphaCA2, alphaCA2
53669	36987002	Farooq M., Jang Y.H., Kim E.G., Park J.R., Eom G.H., Zhao D.D., Kim K.M.	Evaluation of Amino Acid Profiles of Rice Genotypes under Different Salt Stress Conditions.	Plants (Basel)	12(6)		2023		
53670	36805564	Shankar R., Dwivedi A.K., Singh V., Jain M.	Genome-wide discovery of genetic variations between rice cultivars with contrasting drought stress response and their potential functional relevance.	Physiol Plant	175(2)	e13879	2023		
53671	37047052	Sharma N., Jaiswal D.K., Kumari S., Dash G.K., Panda S., Anandan A., Raghuram N.	Genome-Wide Urea Response in Rice Genotypes Contrasting for Nitrogen Use Efficiency.	Int J Mol Sci	24(7)		2023		
53672	37104180	Kato-Noguchi H.	Defensive Molecules Momilactones A and B: Function, Biosynthesis, Induction and Occurrence.	Toxins (Basel)	15(4)		2023		
53673	36995438	Kumar R., Tripathi G., Goyal I., Sharma J., Tiwari R., Shimphrui R., Sarkar N.K., Grover A.	Insights into genomic variations in rice Hsp100 genes across diverse rice accessions.	Planta	257(5)	91	2023		
53674	36902415	Younas M.U., Wang G., Du H., Zhang Y., Ahmad I., Rajput N., Li M., Feng Z., Hu K., Khan N.U., Xie W., Qasim M., Chen Z., Zuo S.	Approaches to Reduce Rice blast disease Using Knowledge from Host Resistance and Pathogen Pathogenicity.	Int J Mol Sci	24(5)		2023		
53675	36880328	Takemura H., Choi J.H., Fushimi K., Narikawa R., Wu J., Kondo M., Nelson D.C., Suzuki T., Ouchi H., Inai M., Hirai H., Kawagishi H.	Role of hypoxanthine-guanine phosphoribosyltransferase in the metabolism of fairy chemicals in rice.	Org. Biomol. Chem.	21(12)	2556-2561	2023		
53676	36902211	Li S., Qi L., Tan X., Li S., Fang J., Ji R.	Small Brown Planthopper Nymph Infestation Regulates Plant Defenses by Affecting Secondary Metabolite Biosynthesis in Rice.	Int J Mol Sci	24(5)		2023		
53677	36928797	Tong S., Ashikari M., Nagai K., Pedersen O.	Can the Wild Perennial, Rhizomatous Rice Species Oryza longistaminata be a Candidate for De Novo Domestication?	Rice (N Y)	16(1)	13	2023		
53678	36907093	Yu X., Zhao J., Ding Z., Xiong F., Liu X., Tian J., Wu N.	Cadmium-absorptive Bacillus vietnamensis 151-6 reduces the grain cadmium accumulation in rice (Oryza sativa L.): Potential for cadmium bioremediation.	Ecotoxicol. Environ. Saf.	254	114760	2023		
53679	36982364	Wang W., Xin W., Chen N., Yang F., Li J., Qu G., Jiang X., Xu L., Zhao S., Liu H., Yang L., Zheng H., Zou D., Wang J.	Transcriptome and Co-Expression Network Analysis Reveals the Molecular Mechanism of Rice Root Systems in Response to Low-Nitrogen Conditions.	Int J Mol Sci	24(6)		2023		
53680	37065794	Khianngam S., Meetum P., Chiangmai P.N., Tanasupawat S.	Identification and Optimisation of Indole-3-Acetic Acid Production of Endophytic Bacteria and Their Effects on Plant Growth.	Tropical Life Sciences Research	34(1)	219-239	2023		
53681	36986991	Tadasanahaller P.S., Bashyal B.M., Yadav J., Krishnan Subbaiyan G., Ellur R.K., Aggarwal R.	Identification and Characterization of <i>Fusarium fujikuroi</i> Pathotypes Responsible for an Emerging Bakanae Disease of Rice in India.	Plants (Basel)	12(6)		2023		
53682	36889214	Tian X., Chai G., Lu M., Xiao R., Xie Q., Luo L.	A new insight into the role of iron plaque in arsenic and cadmium accumulation in rice (Oryza sativa L.) roots.	Ecotoxicol. Environ. Saf.	254	114714	2023		
53683	36856922	Takaiwa F.	Influence on Accumulation Levels and Subcellular Localization of Prolamins by Fusion with the Functional Peptide in Transgenic Rice Seeds.	Mol. Biotechnol.			2023		
53684	36979120	Sahu S., Gupta P., Gowtham T.P., Yogesh K.S., Sanjay T.D., Singh A., Duong H.V., Pradhan S.K., Bisht D.S., Singh N.K., Baig M.J., Rai R., Dash P.K.	Generation of High-Value Genomic Resource in Rice: A "Subgenomic Library" of Low-Light Tolerant Rice Cultivar Swarnaprabha.	Biology (Basel)	12(3)		2023		
53685	36964817	Sun S., Liu K., Xue C., Hu Y., Yu H., Qi G., Chen J., Li X., Zhao X., Gong Z.	Genome-Wide Effects on Gene Expression Between Parental and Filial Generations of Trisomy 11 and 12 of Rice.	Rice (N Y)	16(1)	17	2023		
53686	36877314	Zayabaatar E., Huang C.M., Pham M.T., Ganzorig B., Wang S.M., Chen C.C.	Bacillus amyloliquefaciens Increases the GABA in Rice Seed for Upregulation of type I collagen in the Skin.	Curr. Microbiol.	80(4)	128	2023		
53687	35095981	Zhang Z., Huang B., Chen J., Jiao Y., Guo H., Liu S., Ramakrishnan M., Qi G.	Genome-Wide Identification of <i>JRL</i> Genes in Moso Bamboo and Their Expression Profiles in Response to Multiple Hormones and Abiotic Stresses.	Front Plant Sci	12	809666	2021	RLCK339,RLCK338,JAC1,RLCK145,JRL6,JRL11,JRL14,JRL10,JRL26,JRL7,SALT,JRL28,JRL27,JRL19,JRL23,JRL17,JRL15,JRL2,RLCK336,JRL4,JRL3,JRL21,JRL16,JRL13,JRL5,JRL20,JRL8,JRL18,JRL9	OsRLCK339, OsJRL25, JRL25,OsRLCK338, OsJRL24, JRL24,OsJAC1, DIR54, OsDIR54, OsjDIR54, OsJRL29, JRL29,OsRLCK145, OsJRL12, JRL12,OsJRL06, JRL06, OsJRL6,OsJRL11, OsJRL9, JRL9,OsJRL14,OsJRL10,OsJRL26,OsJRL07, JRL07, OsJRL7, OsJRL45, JRL45,salT*(sal1), SalT1*, sal1, Sal1, SALT, ML, SalT, OsSalT, OsJRL, JRL, Osl43, OsL43, OsMBL1, MBL1, OsJRL01, JRL01, OsJRL1, JRL1,OsJRL28,DIR51 , OsDIR51, OsjDIR51, OsJRL27,OsJRL19,OsJRL23,OsJRL17,OsJRL15,OsJRL02, JRL02, OsJRL2,OsRLCK336, OsJRL22, JRL22,OsJRL04, JRL04, OsJRL4,OsJRL03, JRL03, OsJRL3,OsSTA260, OsJRL21,OsJRL16,OsJRL13,OsJRL05, JRL05, OsJRL5,OsJRL20,OsJRL40, JRL40, OsJRL08, JRL08, OsJRL8,OsJRL18,OsJRL09, JRL09, OsJRL9
53688	37342136	Zhao M., Guo Y., Sun H., Dai J., Peng X., Wu X., Yun H., Zhang L., Qian Y., Li X., He G., Zhang C.	lesion mimic mutant 8 balances disease resistance and growth in rice.	Front Plant Sci	14	1189926	2023	PR1A,SPRL1,NH1,PR10A	OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1, OsPR1b, PR1alpha, OsPR1alpha,OsPPX, PPX, PPO1, OsPPO1, OsSPRL1, LMM8, OsLMM8,OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2, DLN5, OsDLN5,  OsBTBA1, BTBA1,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 
53689	19930663	Fouquaert E., Willy J Peumans, Tom Tm Vandekerckhove, Mat&#xe9; Ongenaert, Els Jm Van Damme	Proteins with an Euonymus lectin-like domain are ubiquitous in Embryophyta.	BMC Plant Biol.	9	136	2009	EULS2,EULD2,EULD1B,EULD1A,EULS3	OsEULS2, OrysaEULS2, OSR40 g3, OSR40g3, R40g3,OsEULD2, EULD2, OrysaEULD2, OSR40c2, R40c2,OsEULD1b, EULD1b, Osr40c1, r40c1, OSR40c1, OrysaEULD1B,OsEULD1a, EULD1a, OrysaEULD1A, OSR40 g2, OSR40g2, R40g2,OsEULS3, OrysaEULS3, r40c1, Osr40c1
53690	28992208	Wang Y., Zhang T., Wang R., Zhao Y.	Recent advances in auxin research in rice and their implications for crop improvement.	J. Exp. Bot.	69(2)	255-263	2018	LRA1,RAU1,PIN5B,YUCCA5	OsPIN2, PIN2, OsLRA1, WAR1, OsWAR1,OsLAX1, OsRAU1, OsAUX1, LAX1, AUX1,PIN5C, OsPIN5c, OsPIN5b, PIN4,OsYUCCA5, OsYUC5, YUC5
53691	37442304	Liu E., Zhu S., Du M., Lyu H., Zeng S., Liu Q., Wu G., Jiang J., Dang X., Dong Z., Hong D.	LAX1, functioning with MADS-box genes, determines normal palea development in rice.	Gene	883	147635	2023	LAX1,MADS7,MFO1,LHS1	lax, lax(lx), lx, OsbHLH123, bHLH123, OsLAX1, BOS1, OsBOS1,OsMADS7, OsMADS45, FDRMADS1, RMADS216, AGL6, M79, MADS45, Os MADS7, Os MADS45, OsMADS7/45,OsMADS6, MADS6, OsMFO1,OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO, OsLHS1, OsLG3b, LG3b, qLGY3, LGY3, DLN80, OsDLN80, OLR, OsOLR, GW3p6, OsGW3p6, OsMADS1GW3p6, MADS1GW3p6, qLGY3/OsLG3b/GW3p6
53692	37500729	Wu B., Meng J., Liu H., Mao D., Yin H., Zhang Z., Zhou X., Zhang B., Sherif A., Liu H., Li X., Xiao J., Yan W., Wang L., Li X., Chen W., Xie W., Yin P., Zhang Q., Xing Y.	Suppressing a phosphohydrolase of cytokinin nucleotide enhances grain yield in rice.	Nat. Genet.	55(8)	1381-1389	2023		
53693	37506985	Li Y., Guo L., Cui Y., Yan X., Ouyang J., Li S.	Lipid transfer protein, OsLTPL18, is essential for grain weight and seed germination in rice.	Gene	883	147671	2023		
53694	37506254	Ma Y., Wu Z., Dong J., Zhang S., Zhao J., Yang T., Yang W., Zhou L., Wang J., Chen J., Liu Q., Liu B.	The 14-3-3 protein OsGF14f interacts with OsbZIP23 and enhances its activity to confer osmotic stress tolerance in rice.	Plant Cell			2023	BZIP72,BZIP46,GF14F,LEA17,BZIP23	OsbZIP72, OsAREB2, OsABF4, ABF4, Osbzip72, OsABI5, ABI5,ABL1, bZIP46, OsABL1, OsbZIP46, OsAREB8, OsABF2, ABF2, OsABF3, ABF3, OsbZIP46CA1, OsZIP46, ZIP46, OsbZIP46/OsABF2,GF14f, SR14-3-3, OsGF14f, S94, ric1, 14-3-3f,OsLEA17, OsLEA3-2, LEA3-2, LEA1,OsbZIP23, OsAREB1, OsABF2, Osbzip23, OsAREB2, OsZIP23, ZIP23
53695	37479204	Shan C., Zhang L., Chen L., Li S., Zhang Y., Ye L., Lin Y., Kuang W., Shi X., Ma J., Adnan M., Sun X., Cui R.	Interaction of negative regulator OsWD40-193 with OseEF1A1 inhibits Oryza sativa resistance to Hirschmanniella mucronata infection.	Int. J. Biol. Macromol.	248	125841	2023		
53696	37467787	Wang X., Zhang Z., Peng W., Huang J., Yan X., Yao W., Ouyang J., Li S.	Inositolphosphorylceramide synthases, OsIPCSs, regulate plant height in rice.	Plant Sci.	335	111798	2023	IPCS2,IPCS1,IPCS3	OsIPCS2,OsIPCS1,OsIPCS3
53697	37454819	Liu F., Yang H., Tang R., Wang W., Shen H., Xu M., Hao T., Hu Y., Zhang Y., Bao Y.	OsTKPR1 proteins with a single amino acid substitution fail the synthesis of a specific sporopollenin precursor and cause abnormal exine and pollen development in rice.	Plant Sci.	335	111792	2023		
53698	37471278	Jang J.H., Noh G., Seo H.S., Jung K.H., Kim Y.J., Lee O.R.	Loss of function of pollen-expressed phospholipase OsMATL2 triggers haploid induction in japonica rice.	Plant Physiol.			2023	MATL2,MATL	OspPLAIIeta, pPLAIIeta, MATL2,OspPLAIIbeta, pPLAIIbeta, OspPLAIIphi, pPLAIIphi, NLD, PLP1, OspPLAIIphi/PLP1, OsMATL, MTL, OsMTL
53699	37464739	Guo R., Zhang Q., Qian K., Ying Y., Liao W., Gan L., Mao C., Wang Y., Whelan J., Shou H.	Phosphate-dependent regulation of vacuolar trafficking of OsSPX-MFSs is critical for maintaining intracellular phosphate homeostasis in rice.	Mol Plant	16(8)	1304-1320	2023	SYP22,SYP21	OsSYP22,OsSYP21
53700	37471276	Gu S., Zhang Z., Li J., Sun J., Cui Z., Li F., Zhuang J., Chen W., Su C., Wu L., Wang X., Guo Z., Xu H., Zhao M., Ma D., Chen W.	Natural variation in OsSEC13 HOMOLOG 1 modulates redox homeostasis to confer cold tolerance in rice.	Plant Physiol.			2023		
53701	37432878	Jin S.K., Xu L.N., Leng Y.J., Zhang M.Q., Yang Q.Q., Wang S.L., Jia S.W., Song T., Wang R.A., Tao T., Liu Q.Q., Cai X.L., Gao J.P.	The OsNAC24-OsNAP protein complex activates OsGBSSI and OsSBEI expression to fine-tune starch biosynthesis in rice endosperm.	Plant Biotechnol. J.			2023	NAC24,FLO5,SSIVB,AGPS2,NAC58,SSI,SBE1,WX1	NAC94, ONAC024, ONAC24, OsNAC024, NAC024,OsSSIIIa, SSIII-2, OsSSIII-2, OsSS3A, SS3A, SS3a, OsSSSIIIa, SSIIIa, Flo5,OsSSIVb, SSIV-2, OsSSIV-2, SSIVb, SSIV-2, SSIV2, OsSSIV2,OsAGPS2a, AGPS2A, AGPS2B, OsAGPS2, osagps2, APS2, APS2a, APS2b, AGPS2a, APGS2b, OsAGPS2b, AGPP, GAS8, OsAPS2, OsAPS2a, OsAPS2b,OsNAP, NAP, ONAC058, ONAC58, Os PS1, PS1, OsCTb1, CTb1,OsSSI, SSS 1, SSS1, SS1, OsSS1, SSSI, OsSSSI,sbe1, Rbe1. Sbe1, sbe1*(QEI), RBE1, BEI, SBE I, QEI, OsBEI, BE1, OsSBE1, OsSBEI, SBEI,wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx
53702	37528980	Yang J., Fang Y., Wu H., Zhao N., Guo X., Mackon E., Peng H., Huang S., He Y., Qin B., Liu Y., Liu F., Chen S., Li R.	Improvement of resistance to rice blast and bacterial leaf streak by CRISPR/Cas9-mediated mutagenesis of <i>Pi21</i> and <i>OsSULTR3;6</i> in rice (<i>Oryza sativa</i> L.).	Front Plant Sci	14	1209384	2023	PI21,SULTR3;6	pi21, rMg40, OsHMP26, HMP26, OsHIPP5, HIPP5, OsaHIP05, HIP05 ,OsSultr3;6, OsSul3;6, OsSULTR3;6 
53703	37511395	Payne D., Li Y., Govindan G., Kumar A., Thomas J., Addo-Quaye CA., Pereira A., Sunkar R.	High Daytime Temperature Responsive MicroRNA Profiles in Developing Grains of Rice Varieties with Contrasting Chalkiness.	Int J Mol Sci	24(14)		2023	MIR393B,MIR1866,MIR444F,MIR5150	OsmiR393b, miR393b, osa-MIR393bosa-miR393b osa-miR393b-3p osa-miR393b-5p,miR1866, osa-miR1866, osa-MIR1866, Osa-miR1866-5p, Osa-miR1866-3p,miR444f, osa-MIR444f,miR5150, osa-miR5150, osa-MIR5150osa-miR5150-3p osa-miR5150-5p
53704	37538056	Padmashree R., Barbadikar K.M., Honnappa, Magar N.D., Balakrishnan D., Lokesha R., Gireesh C., Siddaiah A.M., Madhav M.S., Ramesha Y.M., Bharamappanavara M., Phule A.S., Senguttuvel P., Diwan J.R., Subrahmanyam D., Sundaram R.M.	Genome-wide association studies in rice germplasm reveal significant genomic regions for root and yield-related traits under aerobic and irrigated conditions.	Front Plant Sci	14	1143853	2023		
53705	37520375	Chaganti C., Phule A.S., Chandran L.P., Sonth B., Kavuru V.P.B., Govindannagari R., Sundaram R.M.	Silicate solubilizing and plant growth promoting bacteria interact with biogenic silica to impart heat stress tolerance in rice by modulating physiology and gene expression.	Front Microbiol	14	1168415	2023	_,LSI2,IAA6,HSP60-3B,LSI1	OsHsp90, HSP90,Lsi2, SIET1, OsLsi2, OsSIET1,OsIAA6,OsHSP60-3B,lsi1, NIP2-1, OsNIP2;1, NIP2;1, OsLsi1, lsi(t), OsNIP2.1/OsLsi1/OsSIIT1, OsNIP2.1, NIP2.1
53706	37521918	Liao Z., Xia X., Zhang Z., Nong B., Guo H., Feng R., Chen C., Xiong F., Qiu Y., Li D., Yang X.	Genome-wide association study using specific-locus amplified fragment sequencing identifies new genes influencing nitrogen use efficiency in rice landraces.	Front Plant Sci	14	1126254	2023	RBLS5,NRR	PTR3, OsPTR3, PTR3-A, OsPTR3-A, OsNPF5.5, NPF5.5, OsRBLS5,OsNRR, NRRa, NRRb, OsCCT18, OsCMF6,  CCT18, CMF6, CRCT, OsCRCT
53707	37528969	Kamara N., Jiao Y., Huang W., Cao L., Zhu L., Zhao C., Huang X., Shivute F.N., Liu X., Wu J., Shahid M.Q.	Comparative cytological and transcriptome analyses of <i>ny2</i> mutant delayed degeneration of tapetal cells and promotes abnormal microspore development in neo-tetraploid rice.	Front Plant Sci	14	1229870	2023	_,RSUS2,PTC1,RSUS7,UDT1,DLC1,RSUS3,NY2,TDR,SWEET4,_,KIN14M,MTI1A,STRL2,ABCG26,CYP703A3,EAT1,HXK7,MST3,RAG,G1,MS2,HXK9,FLO5	OsMYB3, MYB3,sus2, RSus2(t), SUS2, SS1, OsScS1, RSs1, RSus2, OsSUS2, RSS1, RSus1, OsSusy2, Susy2, OsRSUS1, RSUS1,OsMS1, tms9-1, OsPTC1, MS1, TMS9-1, OsTMS9-1,SUS7, SS7, OsScS7, RSs7, RSus7, OsSUS7,Udt1, bHLH164, OsUDT1, OsbHLH164 ,RR24, OsRR24, Rrb2, Orr4, OsRR17, RR17, OsRRB2, OsRR24/LEPTO1, OsLEPTO1, LEPTO1, OsDLC1,RSus3(t), SUS3, SS3, OsScS3, RSs3, RSus3, OsSUS3, RSS3, OsEnS-111, Susy3, OsSusy3,OsNY2,tdr, OsbHLH005, bHLH005, OsbHLH5, bhlh5, TDR1, OsTDR, OsTDR1, OsMYC5, MYC5,OsSWEET4,OsbHLH138, bHLH138, OsPIF4, PIF4, OsSACL2, SACL2,OsKIN14M,MT1a, OsMT1a, OsMT1e, OsMT-I-1a, MT-I-1a, OsMT1e-P, MTa, rgMT, OsMT-1, rgMT-1,OsSTRL2, OsSSL1, SSL1,OsABCG26,OsCYP703A3,OsEAT1, OsbHLH141, EAT1/DTD1, bHLH141, DTD1, DTD, DLN120, OsDLN120,OsHXK7, OsHXK8,OsMST3, OsSTP3, STP3,MADS3, OsMADS3, OsMADS3(t), RMADS222, RAG1, rf3,Osg1, g1,OsMS2, OsDPW, DPW, DPW1, OsDPW1, OsFAR2, FAR2,OsHXK9,OsSSIIIa, SSIII-2, OsSSIII-2, OsSS3A, SS3A, SS3a, OsSSSIIIa, SSIIIa, Flo5
53708	37511211	Peng S., Liu Y., Xu Y., Zhao J., Gao P., Liu Q., Yan S., Xiao Y., Zuo S.M., Kang H.	Genome-Wide Association Study Identifies a Plant-Height-Associated Gene <i>OsPG3</i> in a Population of Commercial Rice Varieties.	Int J Mol Sci	24(14)		2023	CESA7,PG3,BC7,BC6,BC1	OsCesA7, OsCESA7, OS_CESA07, OsCesA 7, CesA7,OsPG3,OsCesA4, OsCESA4, CESA4, OS_CESA04, BC11, bc7t, Bc7(t), bc-7, OsCesA 4, CesA4, FC17/CESA4, FC17, OsFC17,Bc6*, Bc6, OsCesA9, CESA9, OsCESA9, OS_CESA09, OsCesA 9, CesA9, BC88, SDBC1, OsSDBC1,bc1, bc-1, OsBC1, CWA1, FP1, OsPCS3, PCS3
53709	37460083	Xiao Y., Lv W., Tong Q., Xu Z., Wang Z.	The RasGEF MoCdc25 regulates vegetative growth, conidiation and appressorium-mediated infection in the rice blast fungus Magnaporthe oryzae.	Fungal Genet. Biol.	168	103825	2023		
53710	37468664	Zan X., Zhou Z., Wan J., Chen H., Zhu J., Xu H., Zhang J., Li X., Gao X., Chen R., Huang Z., Xu Z., Li L.	Overexpression of OsHAD3, a Member of HAD Superfamily, Decreases drought tolerance of Rice.	Rice (N Y)	16(1)	31	2023	RBOHA,LEA3-1,ONAC2,PRX22,RBOHF,TPS1,ERF42,RAB16A,HADL	rbohA, OsrbohA, Os rbohA, OsRbohA, OsNox2, Nox2, OsRboh2, Rboh2,OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3, OsLEA3A, LEA3A,SNAC1, snac1, OsNAC9, ONAC002, ONAC2, ONAC033, ONAC33, ONAC043, ONAC43, ONAC044, ONAC44, OsNAC19, NAC19, SNAC1/ONAC002, OsSNAC1, OsNAC9, OsNAC1,prx22, OsPRX22, OsPOD,RbohF, rbohF, OsrbohF, Os rbohF, OsNox6, Nox6, OsrbohE, rbohE, OsRboh6, Rboh6,OsTPS1,OsERF#042, OsERF042, OsERF42, AP2/EREBP#048, AP2/EREBP48, OsDREB2B, DREB2B, OsDREB2B2, OsDREB2A, DREB2A,Rab16A, rab21, RAB21, OsRab21, OsRAB21, OsRAB-21, OsRab16A, OsLEA29, rab16A, OsRAB16A,OsHADL, OsHAD3, HAD3
53711	37402157	Zhang C., Zhong X., Li S., Yan L., Li J., He Y., Lin Y., Zhang Y., Xia L.	Artificial evolution of OsEPSPS through an improved dual cytosine and adenine base editor generated a novel allele conferring rice glyphosate tolerance.	J Integr Plant Biol	65(9)	2194-2203	2023	EPSPS	EPSPs, OsEPSPS
53712	37421622	Li J., Qiu J.X., Zeng Q.H., Yi Zhuang, Zhang N., Xu S.X., Jin J., Dong Z.C., Chen L., Huang W.	OsTOC1 plays dual roles in the regulation of plant circadian clock by functioning as a direct transcription activator or repressor.	Cell Rep	42(7)	112765	2023	BBX12,BBX10,PRR73,PRR95,TGAL3A,COL4,HD2,IAA27,TOC1,BBX25,IAA12,TGAL3B,GI,CCA1,PRR59	OsBBX12, OsC, OsCCT16, CCT16,OsBBX10, OsJ, OsCCT14, OsCOL10, COL10, OsCOL9, CCT14, COL9,OsPRR73, Os-PRR73, Prr3, OsPRR3, OsRRA20, OsCCT11, CCT11,OsPRR95, Os-PRR95, Prr2, OsPRR2, OsCCT33,OsTGAL3a,OsCOL4, OsD, OsBBX5, OsCOL4/OsD, OsCCT06, BBX5, CCT06,Hd2(t), Hd2, qHD2(t), OsPRR37, Os-PRR37, PRR37, Prr4, OsPRR4, DTH7, Os DTH7, OsCCT28, CCT28, Ghd7.1, PRR37/Hd2, EH7-2, EH7-2/Hd2, Hd2/PRR37, PRR37-1a, PRR37-1b, PRR37-1c, PRR37-2a, PRR37- 2, HD7.2,OsIAA27,OsTOC1, OsPRR1, Os-PRR1, PRR1, OsRRA21, OsCCT07,OsBBX25, OsG, OsCCT29, CCT29,OsIAA12,OsTGAL3b,OsGI, Gi, Os-GI,OsCCA1, OsLHY, LHY, LHY-like_chr.8, COC1, DLN203, OsDLN203, LEM1, OsLEM1, Nhd1, OsNhd1,OsPRR59, Os-PRR59, Prr5, OsPRR5, OsCCT38, CCT38
53713	37514345	Pooam M., El-Ballat EM., Jourdan N., Ali H.M., Hano C., Ahmad M., El-Esawi MA.	<i>SNAC3</i> Transcription Factor Enhances Arsenic Stress Tolerance and grain yield in Rice (<i>Oryza sativa</i> L.) through Regulating Physio-Biochemical Mechanisms, Stress-Responsive Genes, and cryptochrome 1b.	Plants (Basel)	12(14)		2023	CRY1B,_	OsCRY1b, OsCRY2, CRY1b, CRY1, OsCCT1b, CCT1b,ONAC003, ONAC3, ONAC016, ONAC16, SNAC3, OsSND3, SND3, OsNAC006, NAC006, ONAC066
53714	37570963	Ouyang Q., Zhang Y., Yang X., Yang C., Hou D., Liu H., Xu H.	Overexpression of <i>OsPIN9</i> Impairs Chilling Tolerance via Disturbing ROS Homeostasis in Rice.	Plants (Basel)	12(15)		2023	COLD1,DREB1B,PIN10A,PIN5A,PIN1C,PIN9,PIN1D,RBOHA,TPP1,PIN5C,CDS1,DREB1C,PIN10B,DREB1A,PIN1B,RBOHD,RBOHI,RBOHF	OsCOLD1,OsDREB1B, ERF31, OsERF031, OsERF#031, OsERF31, AP2/EREBP#169, AP2/EREBP169, OsDREB1b, OsDREB1C, OsCBF1, CBF1,PIN3A, OsPIN3a, OsPIN3t, OsPIN10a, OsPIN3,OsPIN5a, OsPIN6,PIN1B, OsPIN1B, OsPIN1b, OsPIN1c,OsPIN9,OsPIN1D, OsPIN1d,rbohA, OsrbohA, Os rbohA, OsRbohA, OsNox2, Nox2, OsRboh2, Rboh2,OsTPP1, OsTPS, TPP,PIN5B, OsPIN5b, OsPIN5c,OsCNGC15, CNGC15, OsCNGC9, CNGC9, OsCDS1,OsDREB1C, CBF1, ERF26, OsERF026, OsERF#026, OsERF26, AP2/EREBP#098, AP2/EREBP98, OsCBF2, CBF2,PIN3B, OsPIN3b, OsPIN10b,OsDREB1A, Os DREB1A, CBF3, OsCBF3, OsDREB1A/OsCBF3, ERF24, OsERF24, OsERF024, OsERF#024, AP2/EREBP#114, AP2/EREBP114, OsDREBL,PIN1A, OsPIN1A, OsPIN1a, REH1, OsPIN1, OsPIN1b, REH1/OsPIN1,rbohD, OsrbohD, Os rbohD, OsRbohD, OsNox4, OsRboh4, Rboh4,OsrbohI, Os rbohI, rbohI, OsRbohI, OsRbohF, OsNOX8, NOX8, OsRboh8, Rboh8,RbohF, rbohF, OsrbohF, Os rbohF, OsNox6, Nox6, OsrbohE, rbohE, OsRboh6, Rboh6
53715	37523054	Banu M.S.A., Huda K.M.K., Harun-Ur-Rashid M., Parveen S., Shahinul Islam SM., Tuteja N.	Phenotypic and microarray analysis reveals salinity stress-induced oxidative tolerance in transgenic rice expressing a DEAD-box RNA helicase, OsDB10.	Plant Mol. Biol.			2023	_	OsRH14, p68, OsDB10, DB10
53716	37499960	Yamasawa R., Saito H., Yashima Y., Ito H., Hamada S.	Identification, characterization, and application of a d-cysteine desulfhydrase from rice seed (Oryza sativa L.).	Protein Expr. Purif.	211	106341	2023		
53717	37531662	Wang J.Y., Chen G.E., Braguy J., Jamil M., Berqdar L., Al-Babili S.	Disruption of the cytochrome CYP711A5 gene reveals MAX1 redundancy in rice strigolactone biosynthesis.	J. Plant Physiol.	287	154057	2023		
53718	37493927	Sharma H., Shayaba, Kumar R., Kumar J., Bhadana D., Batra R., Singh R., Kumar S., Roy J.K., Balyan H.S., Gupta P.K.	Comparative analysis of VMT genes/proteins in selected plant species with emphasis on bread wheat (Triticum aestivum L.).	Genes Genomics			2023		
53719	37488129	Gu X., Si F., Feng Z., Li S., Liang D., Yang P., Yang C., Yan B., Tang J., Yang Y., Li T., Li L., Zhou J., Li J., Feng L., Liu J.Y., Yang Y., Deng Y., Wu X.N., Zhao Z., Wan J., Cao X., Song X., He Z., Liu J.	The OsSGS3-tasiRNA-OsARF3 module orchestrates abiotic-biotic stress response trade-off in rice.	Nat Commun	14(1)	4441	2023	ETT1,TAS3B1,TSP,TAS3D,SHL2,SGS3B,CATA,SHO1,ETT2,TAS3A1,ARF14,TAS3A2,TAS3B2,ARF3	OsARF15, ARF15, OsETT1, ARF3b, OsARF3b, OsARF3-1, ARF3-1, OsARF3, ARF3, DLN154, OsDLN154,TAS3b1, OsTAS3b1, OsTAS3a, TAS3a, OsTAS3b, TAS3b,OsSGS3, SGS3, OsSGS3a, SGS3a, OsTSP,OsTAS3d, TAS3d,shl2, SHL2, sh2, OsRDR6, RDR6,OsSGS3b, SGS3b,CATA1, Cat A1*, OSCAT-A, Cat2, CatA1, CAT-A, OsCatA, OsCAT, CAT, catA, OSCATA, OsCATc, OsCATA, OsCAT1A, CAT1, OsCAT1, OsCATC, OsCAT2,sho1, DCL4, OsDCL4, Os DCL4, Dcl4 ,OsARF2, ARF2, OsETT2, ARF3a, OsARF3a, DLN16, OsDLN16, ARF3,TAS3a1, OsTAS3a1, OsTAS3a, TAS3a,OsARF14, OsETT4, ETT4, DLN153, OsDLN153, OsARF3la, ARF3la,OsTAS3a2, TAS3a2, OsTAS3e, TAS3e,OsTAS3b2, TAS3b2, OsTAS3c, TAS3c,OsARF3, ETT3, Os ETT3, OsETT3, DLN20, OsDLN20, ARF4, OsARF3lb, ARF3lb
53720	37491477	Garg T., Yadav M., Mushahary K.K.K., Kumar A., Pal V., Singh H., Jain M., Yadav S.R.	Spatially activated conserved auxin-transcription factor regulatory module controls de novo root organogenesis in rice.	Planta	258(3)	52	2023		
53721	37479866	Nishiguchi M., Futamura N., Endo M., Mikami M., Toki S., Katahata S.I., Ohmiya Y., Konagaya K.I., Nanasato Y., Taniguchi T., Maruyama T.E.	CRISPR/Cas9-mediated disruption of CjACOS5 confers no-pollen formation on sugi trees (Cryptomeria japonica D. Don).	Sci Rep	13(1)	11779	2023		
53722	37554558	Yang L., Fang J., Wang J., Hui S., Zhou L., Xu B., Chen Y., Zhang Y., Lai C., Jiao G., Sheng Z., Wei X., Shao G., Xie L., Wang L., Chen Y., Zhao F., Hu S., Hu P., Tang S.	Genome-wide identification and expression analysis of 3-Ketoacyl-CoA synthase gene family in rice (<i>Oryza sativa</i> L.) under cadmium stress.	Front Plant Sci	14	1222288	2023	KCS4,KCS9,SD38,KCS1,WSL1,CUT5,CUT7,FAE1,CUT1,CUT3,ONI1,KCS22,HMS1,KCS12,KCS19,KCS10,ONI2,KCS2,KCS5,KCS11,CUT2,KCS18	KCS, OsKCS4,OsKCS9,OsSD38, OsKCS21, KCS21,OsKCS1, OsKCS13, KCS13,OsWSL1, FAE', OsFAE1', OsCER6, CER6, OsKCS17, KCS17,OsCUT5, OsKCS15, KCS15,OsCUT7, OsKCS16, KCS16,OsCHS, FAE, OsFAE1, OsKCS14, KCS14,OsCUT1, OsKCS1, KCS1,OsCUT3, OsKCS6, KCS6,OsONI1, FDH, OsCUT4, CUT4, OsKCS7, KCS7,OsKCS22,CER6/CUT1, CER6, CUT1, OsCER6, WSL4, KCS6, OsKCS6, CER6/CUT1/KCS6, OsHMS1, OsKCS8, KCS8,OsKCS12,OsKCS19,OsKCS10,OsONI2, OsCUT9, CUT9, OsKCS20, KCS20,KCS, OsKCS2,OsKCS5,OsKCS11,OsCUT2, OsKCS3, KCS3,OsKCS18
53723	37402009	Shen Y., Yang G., Miao X., Shi Z.	OsmiR159 Modulate BPH Resistance Through Regulating G-Protein &#x3b3; Subunit GS3 Gene in Rice.	Rice (N Y)	16(1)	30	2023	miR159E,MIR159A,GAMYB,CESA7,GAMYBL2,LK3,miR159D,BC7,miR159B,miR159C,BC6,miR159F	OsmiR159e, osa-MIR159e,miR159a, osa-miR159a, osa-MIR159a, OsmiR159a, OsmiR159a.2, miR159a.2, OsmiR159a.1, miR159a.1, osa-miR159a.1, osa-miR159a.2,OsGAMYB, GAM1, OsGAMyb, Os-MYBGA, Os GAMYB, OsMYBGA, MYBGA, Os2R_MYB15, 2R_MYB15 ,OsCesA7, OsCESA7, OS_CESA07, OsCesA 7, CesA7,OsGAMYBL2, Os2R_MYB40, 2R_MYB40,lk3(t), lk3(t)*, SG3, GS3, SG3-GS3, OsGW3, OsGS3, RGG3/GS3/Mi/OsGGC1, RGG3, Mi, OsGGC1, GGC1, OsSYL3, SYL3, TT2, OsTT2,OsmiR159d, osa-MIR159d,OsCesA4, OsCESA4, CESA4, OS_CESA04, BC11, bc7t, Bc7(t), bc-7, OsCesA 4, CesA4, FC17/CESA4, FC17, OsFC17,OsmiR159b, osa-MIR159b,OsmiR159c, osa-MIR159c,Bc6*, Bc6, OsCesA9, CESA9, OsCESA9, OS_CESA09, OsCesA 9, CesA9, BC88, SDBC1, OsSDBC1,OsmiR159f, osa-MIR159f
53724	37392131	Wang L., Lu H., Zhang X., He Y., Zhang J., Guo X., Fu H., Ye G., Shu Q.	Disruption of serotonin biosynthesis increases resistance to striped stem borer without changing innate defense response in rice.	J. Pineal Res.	75(2)	e12895	2023		
53725	37514208	Gu Q., Kang J., Gao S., Zhao Y., Yi H., Zha X.	Eukaryotic Translation Elongation Factor <i>OsEF1A</i> Positively Regulates drought tolerance and Yield in Rice.	Plants (Basel)	12(14)		2023	RFA4	rfa4*, REFA4, refa4, eEF-1a, OsEF-1a, OsEF1A, EF1A, eIF-1-alpha
53726	37421983	Kandhol N., Rai P., Pandey S., Singh S., Sharma S., Corpas F.J., Singh V.P., Tripathi D.K.	Zinc induced regulation of PCR1 gene for cadmium stress resistance in rice roots.	Plant Sci.	337	111783	2023		
53727	37484470	Shi Y., Jiang N., Wang M., Du Z., Chen J., Huang Y., Li M., Jin Y., Li J., Wan J., Jin X., Zhang L., Huang J.	<i>OsHIPP17</i> is involved in regulating the tolerance of rice to copper stress.	Front Plant Sci	14	1183445	2023	RR1,COPT1,IPT1,HMA4,COPT5,HMA5,ATX1,HIPP17,CKX1	rr1, OsRR1, Rra9, OsRRA9,OsCOPT1,OsIPT1,OsHMA7, osHMA4, HMA7, OsHMP12, HMP12,OsCOPT5,OsHMA8, osHMA5, HMA8, OsHMP27, HMP27,OsATX1, OsaATX1, OsHMP37, HMP37,OsHIPP17, OsaHIP17, HIP17,OsCKX1
53728	37446320	Maniruzzaman S., Rahman M.A., Hasan M., Rasul M.G., Molla A.H., Khatun H., Iftekharuddaula K.M., Kabir M.S., Akter S.	Molecular Mapping to Discover Reliable Salinity-Resilient QTLs from the Novel Landrace Akundi in Two Bi-Parental Populations Using SNP-Based Genome-Wide Analysis in Rice.	Int J Mol Sci	24(13)		2023		
53729	37419328	Saifi S.K., Passricha N., Tuteja R., Nath M., Gill R., Gill S.S., Tuteja N.	OsRuvBL1a DNA helicase boost salinity and drought tolerance in transgenic indica rice raised by in planta transformation.	Plant Sci.	335	111786	2023		
53730	37141284	Tang H., Fan J., Wang R., Zhu J., Xiang X., Dong J., Zhou L., Wang L.	Changes in the expression pattern of OsWUS negatively regulate plant stature and panicle development in rice.	G3 (Bethesda)	13(7)		2023	CKX9,GA2OX6,SP1,SD37,PAP2,RFT1,MADS55,TAB1,MADS5,MADS26,MADS50,RCN1,GHD7,SD1	OsCKX9,OsGA2ox6,sp, SP, OsNPF4.1, NPF4.1, OsSP1,OsCYP96B4, CYP96B4, CYP96B4/SD37, OsDSS1, DSS1, CFL2, OsCFL2, CFL2/OsCYP96B4, BSHT1, OsBSHT1, BSHT1/OsCYP96B4, DDT1, OsDDT1,MADS34, OsMADS34, RMADS212/RMADS217/RMADS221, OsPAP2/MADS34, MADS34/PAP2, PAP2/OsMADS34, OsMADS34/PAP2, OsMADS19,FT-L 3, OsFTL3, FTL3, FT-L3, RFT, OsRFT1,OsMADS55, DLN163, OsDLN163,Os WUS, WUS, OsWOX1, WOX1, OsWUS, OsTAB, TAB1/WUS, MOC3, MOC3/OsWUS, SRT1, MOC3/TAB1/SRT1, DC1, OsDC1, DAP1, OsDAP1,OsMADS5, FDRMADS2,OsMADS26, FDRMADS3, RMADS220,OsMADS50, AGL20, SOC1, OsSOC1, RMADS208, OsSOC1/ OsMADS50/DTH3, DTH3, OsDTH3,Rcn1, FDR2, Fdr2, RCN1/FDR2, OsRCN1,Ghd2, Ghd7, OsGhd7, OsCCT26, OsCMF8, OsI, Ghd7/Hd4, Hd4, EH7-1/Hd4, Ghd7-0a, EH7-1, EH7/Ghd7, EH7, OsEH7, GLW7.1, OsGLW7.1,sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2, OsPHQ1, OsPHq1, PHq1
53731	37648046	Rodr&#xed;guez-Mej&#xed;as FJ., Mottaghipisheh J., Schwaiger S., Kiss T., Csupor D., Varela R.M., Mac&#xed;as FA.	Allelopathic studies with furanocoumarins isolated from Ducrosia anethifolia. In vitro and in silico investigations to protect legumes, rice and grain crops.	Phytochemistry	215	113838	2023		
53732	37648256	Zhang X., Feng Q., Miao J., Zhu J., Zhou C., Fan D., Lu Y., Tian Q., Wang Y., Zhan Q., Wang Z.Q., Wang A., Zhang L., Shangguan Y., Li W., Chen J., Weng Q., Huang T., Tang S., Si L., Huang X., Wang Z.X., Han B.	The WD40 domain-containing protein Ehd5 positively regulates flowering in rice (Oryza sativa).	Plant Cell			2023	ROC4,HD5,RFT1,EHD5,GHD7,EF1,HD3A	Roc4(t), Roc4, GL2-4, OsROC4, OsGL2-4, OsHDZ16, OsHDZIP16, HDZ16, HDZIP16,Hd5(t)*, Hd5, qHD5, HAP3H, OsHAP3H, NF-YB, CBF-A, DTH8 , qHD5(t)*, Ghd8, Ghd8/DTH8, Lhd1, NF-YB11, OsNF-YB11, NFYB11, LH8, DTH8/Ghd8, RH8, DTH8/Ghd8/LHD1, CAR8, DTH8/Ghd8/ OsHAP3H, EF8, OsEF8,FT-L 3, OsFTL3, FTL3, FT-L3, RFT, OsRFT1,OsWD40-161, WD40-161, Ehd5, OsEhd5,Ghd2, Ghd7, OsGhd7, OsCCT26, OsCMF8, OsI, Ghd7/Hd4, Hd4, EH7-1/Hd4, Ghd7-0a, EH7-1, EH7/Ghd7, EH7, OsEH7, GLW7.1, OsGLW7.1,Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a 
53733	37639600	Kojima M., Makita N., Miyata K., Yoshino M., Iwase A., Ohashi M., Surjana A., Kudo T., Takeda-Kamiya N., Toyooka K., Miyao A., Hirochika H., Ando T., Shomura A., Yano M., Yamamoto T., Hobo T., Sakakibara H.	A cell wall-localized cytokinin/purine riboside nucleosidase is involved in apoplastic cytokinin metabolism in <i>Oryza sativa</i>.	Proc. Natl. Acad. Sci. U.S.A.	120(36)	e2217708120	2023	CPN1	OsCPN1
53734	37595851	Javed M., Reddy B., Sheoran N., Ganesan P., Kumar A.	Unraveling the transcriptional network regulated by miRNAs in blast-resistant and blast-susceptible rice genotypes during Magnaporthe oryzae interaction.	Gene	886	147718	2023		
53735	37561192	Nguyen T.T., Pham D.T., Nguyen N.H., Do P.T., To H.T.M.	The germin-like protein gene OsGER4 is involved in heat stress response in rice root development.	Funct. Integr. Genomics	23(3)	271	2023		
53736	37535208	Long Q., Qiu S., Man J., Ren D., Xu N., Luo R.	OsAAI1 Increases Rice Yield and drought tolerance Dependent on ABA-Mediated Regulatory and ROS Scavenging Pathway.	Rice (N Y)	16(1)	35	2023	PP2C1,AAI1,NCED2,PYL/RCAR10,NCED1,PYL/RCAR5,ABA2,NCED1,AO1,NCED2,ABA8OX3,CYP714B1,PP2C53,ABA1,SD37,NCED3	OsPP2C1, OsSIPP2C1, SIPP2C1, OsPP2C68, PP2C68, OsPP108,OsAAI1,OsNCED2, OsNced2, OsCCD4b, CCD4b, OsCCD4c, CCD4c,OsPYL/RCAR10, PYL10, OsPYL10, OsPYL1, PYL1, R10, OsPYL/R10,OSNCED1, OsNCED-1, OsNCED3, OsNced3, NCED3, OsNCED9, NCED9,OsPYL/RCAR5, PYL5, OsPYL5, OsPYL11, PYL11,OsABA2, OsSDR, SDR,OsNCED1, OsCCD4a, CCD4a,AAO3, OsAAO3, OsAO1, AAO2, OsAAO2,OSNCED2, OsNCED2, OsNCED5, NCED5,OsABA8OX3, OsABA8ox3, CYP707A7, OsCYP707A7, OsAba-ox3, OsABA8ox3, OsABA8'ox3, ABA8'ox3, OsABAX3, ABAX3, OsABA8'OH3, ABA8'OH3,OsCYP714B1,OsPP2C53, OsPP81, OsABIL2, ABIL2,OsABA1, Zep1, OsAba1, Aba2, OsAba2, OsZep1, Zep, OsZep, Aba1, OsABA2, Osaba1, OsZEP-1, OsZEP, OSZEP1, ZEP1, ZEP,OsCYP96B4, CYP96B4, CYP96B4/SD37, OsDSS1, DSS1, CFL2, OsCFL2, CFL2/OsCYP96B4, BSHT1, OsBSHT1, BSHT1/OsCYP96B4, DDT1, OsDDT1,OSNCED3, OsNCED-3, OsNCED3, OsNCED3a, NCED3a, OsNCED4, NCED4, OsNECD2, OsNCED2b, NCED2b 
53737	37600168	Liu L., Cui K., Qi X., Wu Y., Huang J., Peng S.	Varietal responses of root characteristics to low nitrogen application explain the differing nitrogen uptake and grain yield in two rice varieties.	Front Plant Sci	14	1244281	2023	AMT1;1,AMT1;3,AMT1;2	OsAMT1;1, OsAMT1:1, OsAMT1, AMT1-1, AMT1, OsAMT1p, OsAMT1-1, Osamt1-1, "OsAMT1,1", OsAMT1.1, AMT1.1, FCO12,OsAMT1;3, AMT1-3, Osamt1-2, "OsAMT1,2", OsAMT1;2, OsAMT1.3, AMT1.2,OsAMT1;2, AMT1-2, Osamt1-3, "OsAMT1,3", OsAMT1;3, OsAMT1.3, OsAMT1.2, AMT1.2
53738	37571030	Purwestri Y.A., Nurbaiti S., Putri S.P.M., Wahyuni I.M., Yulyani S.R., Sebastian A., Nuringtyas T.R., Yamaguchi N.	Seed Halopriming: A Promising Strategy to Induce salt tolerance in Indonesian Pigmented Rice.	Plants (Basel)	12(15)		2023	P5CS,WRKY70,SODCC1,WRKY42,RS2,APX2	OsP5CS, P5CS1, OsP5CS1, OsALDH18B1, ALDH18B1, OsP5CS-1, P5CS-1,OsWRKY70,sodCc1, SODCC.1, sodA, RSODA, OsSOD1, OsCSD2, OsSodA, SodCc2, OsSODA1, SODCc1-Cu/Zn, OsCu/Zn-SOD2, Cu/Zn-SOD2, OsCSD1.2, CSD1.2, OsSODCc1-Cu/Zn, SODCc1-Cu/Zn, CuZnSOD1, Cu/ZnSOD1, OsCu/ZnSOD1, OsCSD4, CDS4, CuZnSOD4, OsCuZnSOD1, OsCSD1, CSD1, OsSOD2,OsWRKY42, WRKY-42,OsMYB91, MYB91, OsRS2, OsMYB125, MYB125 ,OsAPX2, OsAPx02, APXb, OsAPx2, OSAPX2, APx2, cAPX, OsAPX1, APX1
53739	37615020	Hu L., Yang D., Wang H., Du X., Zhang Y., Niu L., Wan B., Xia M., Qi H., Mou T., You A., Li J.	Transcriptome analysis revealed differentially expressed genes in rice functionally associated with brown planthopper defense in near isogenic lines pyramiding <i>BPH14</i> and <i>BPH15</i>.	Front Plant Sci	14	1250590	2023	BPH14,POX8.1,BPH15	Bph14 (Qbp1), Bph14, Qbp1, qBPH-3,POX8.1, prx110, POX8,RLCK134, OsRLCK134, OsLecRK1, LecRK1, SDRLK-LecRK1, OsSDRLK-LecRK1, OslecRK, lecRK, Bph15, OsBph15, Bph15 (Qbp2), Qbp2, qBPH-4
53740	37636104	Kang J.W., Lee S.K., Shim S.H., Shin D., Cho J.H., Lee J.Y., Ko J.M., Ji H., Park H.M., Ahn E.K., Lee J.H., Jeon J.S.	Dry-milled flour rice 'Seolgaeng' harbors a mutated fructose-6-phosphate 2-kinase/fructose-2,6-bisphosphatase2.	Front Plant Sci	14	1231914	2023	F2KP2,F2KP1	OsF2KP2,OsF2KP1
53741	37553956	Wang Y., Wang F., Lu H., Lin R., Liu J., Liu Y., Xu J., Wu Y., Wang Z., Zhou M., Mo X., Wu Z., Shou H., Zheng S., Mao C.	Rice chromatin protein OsHMGB1 is involved in phosphate homeostasis and plant growth by affecting chromatin accessibility.	New Phytol.	240(2)	727-743	2023		
53742	37527483	Peng L., Xiao H., Li R., Zeng Y., Gu M., Moran N., Yu L., Xu G.	Potassium transporter OsHAK18 mediates potassium and sodium circulation and sugar translocation in rice.	Plant Physiol.			2023		
53743	37551552	Lei D., Jian A., Huang X., Liu X., Chen L., Bai W., Cheng S., He X., Xiong Y., Yu X., Wang C., Zheng H., You S., Wang Q., Lu J., Hu Y., Xie Z., Jiang L., Zhang X., Ren Y., Lei C., Cheng Z., Lin Q., Wu C., Zhu S., Zhao Z., Wan J.	Anther-specific expression of OsRIP1 causes dominant male sterility in rice.	Plant Biotechnol. J.	21(10)	1932-1934	2023	DMS1	Dms1, OsRIP1, RIP1
53744	37453142	Pehlivan N., Gedik K., Wang J.J.	Tea-based biochar-mediated changes in cation diffusion homeostasis in rice grown in heavy metal (loid) contaminated mining soil.	Plant Physiol. Biochem.	201	107889	2023		
53745	37600188	Salsinha Y.C.F., Rini D.S., Indradewa D., Rachmawati D., Alam T., Purwestri Y.A.	Exogenously applied <i>Casuarina equisetifolia</i> leaf extracts act as an osmoprotectant on proline accumulation under drought stress in local rice from Indonesia.	Front Plant Sci	14	1210241	2023	NAC6,WRKY45,DREB1A,P5CS,PRODH,DREB2A,P5CR	OsNAC6, ONAC048, NAC48, SNAC2, SNAC2/OsNAC6, OsNAC6/ONAC048, OsSNAC2, SNAC-2, OsSNAC-2, OsNAC2,OsWRKY45, OsWRKY45-1, OsWRKY45-2, WRKY45-1, WRKY45-2,OsDREB1A, Os DREB1A, CBF3, OsCBF3, OsDREB1A/OsCBF3, ERF24, OsERF24, OsERF024, OsERF#024, AP2/EREBP#114, AP2/EREBP114, OsDREBL,OsP5CS, P5CS1, OsP5CS1, OsALDH18B1, ALDH18B1, OsP5CS-1, P5CS-1,OsProDH, OsPDH, PDH,OsDREB2A, OsDREB2a, ERF40, OsERF#040, OsERF040, OsERF40, AP2/EREBP#167, AP2/EREBP167,OsP5CR
53746	37560615	Meher J., Sarkar A., Sarma B.K.	Binding of stress-responsive OsWRKY proteins through WRKYGQK heptapeptide residue with the promoter region of two rice blast disease resistance genes <i>Pi2</i> and <i>Pi54</i> is important for development of blast resistance.	3 Biotech	13(9)	294	2023		
53747	37615478	Liu K., Sakuraba Y., Ohtsuki N., Yang M., Ueda Y., Yanagisawa S.	CRISPR/Cas9-mediated elimination of OsHHO3, a transcriptional repressor of three AMMONIUM TRANSPORTER1 genes, improves nitrogen use efficiency in rice.	Plant Biotechnol. J.			2023	AMT1;3,MYB59,AMT1;1	OsAMT1;3, AMT1-3, Osamt1-2, "OsAMT1,2", OsAMT1;2, OsAMT1.3, AMT1.2,OsMYB59, OsHHO3, HHO3,OsAMT1;1, OsAMT1:1, OsAMT1, AMT1-1, AMT1, OsAMT1p, OsAMT1-1, Osamt1-1, "OsAMT1,1", OsAMT1.1, AMT1.1, FCO12
53748	37686066	Wu T., Bi Y., Yu Y., Zhou Z., Yuan B., Ding X., Zhang Q., Chen X., Yang H., Liu H., Chu Z.	Activated Expression of Rice DMR6-like Gene <i>OsS3H</i> Partially Explores the Susceptibility to Bacterial Leaf Streak Mediated by Knock-Out <i>OsF3H04g</i>.	Int J Mol Sci	24(17)		2023	PR1B,PIBH8,GSTU24,PR1A,WRKY45,2ODD3,S3H,NH3,BISAMT1	OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1, OsPR1a, PR1a,Pib-H8, PibH8, OsPibH8,OsGSTU24,OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1, OsPR1b, PR1alpha, OsPR1alpha,OsWRKY45, OsWRKY45-1, OsWRKY45-2, WRKY45-1, WRKY45-2,2-ODD3, Os2-ODD3, Os2ODD3, OsF3H04g, F3H04g, OsSAH2, SAH2, OsF3H2, F3H2, OsF3H04g/OsSAH2, OsS5H3, S5H3,OsS3H, 2-ODD1, Os2-ODD1, 2ODD1, Os2ODD1, OsSAH3, SAH3, OsS3H/OsSAH3, OsS5H1, S5H1,OsNPR3, OsNH3, NPR3, OsNPR3.1, OsNPR3.2, OsNPR3.3 ,  OsBTBA4, BTBA4, OsNPR4, NPR4,OsBISAMT1
53749	37687282	Sahoo B., Nayak I., Parameswaran C., Kesawat M.S., Sahoo K.K., Subudhi H.N., Balasubramaniasai C., Prabhukarthikeyan S.R., Katara J.L., Dash S.K., Chung S.M., Siddiqui M.H., Alamri S., Samantaray S.	A Comprehensive Genome-Wide Investigation of the Cytochrome 71 (<i>OsCYP71</i>) Gene Family: Revealing the Impact of Promoter and Gene Variants (Ser33Leu) of <i>OsCYP71P6</i> on Yield-Related Traits in Indica Rice (<i>Oryza sativa</i> L.).	Plants (Basel)	12(17)		2023	CYP71Z5,CYP71Y2,CYP71C3,CYP71U10,CYP71AC2,CYP71AK1,CYP71C6,CYP71Z8,CYP71AF1,CYP71Q1,CYP92A9,CYP76L1,F3'H8,CYP71T2,CYP76M6,CYP71AB12,CYP71X2,CYP71K3,CYP71K4,CYP76-13,CYP71Z8,CYP76-6,CYP71W1,CYP71S3,CYP71P6,CYP75B4,CYP71Z1,CYP71E3,CYP71S2,CYP71AK2,CYP71C4,CYP71P4,CYP71AF2,CYP71U6,CYP93G2,CYP71K2,CYP71E5,CYP71K1,CYP71V1,CYP71X1,CYP71U3,CYP71T3,CYP76-17,CYP71AB6,CYP71K6,CYP71Y1,CYP71AB14,F5HL2,CYP71Z6,CYP71U5,CYP71AB9,CYP71W4,CYP71X3,CYP71T6,SL,CYP93G1,CYP71V2,F3'H1,CYP71X4,CYP71V4,CYP93F1,CYP76M10,F3'H6,CYP76-16,CYP71C2,CYP81E1,CYP71W9,F3'H4,CYP71V3,CYP71W3,CYP71C16,CYP71Z1,CYP71U4,CYP71X5,CYP71C1,CYP71AD,CYP71AC1,CYP71C5,CYP71U2,CYP71T1,F3'H2,CYP76M1,CYP71C8,C3H1,CYP71AB13,CYP92C21,BEL,CYP81A5,CYP76M9,CYP71Y3,F3'H3,CYP71E1,CYP71AB3,CYP71Z9,CYP71AB4,F3'H,CYP71U12,CYP71AA3,CYP71Z7,CYP76M5,CYP71AA2,CYP71Y5,CYP71AB5,CYP71P1,CYP71R1,CYP71Z4	Oscyp71Z5, OsCYP71Z4, CYP71Z4,OsCYP71Y2,OsCYP71C3,OsCYP71U10,OsCYP71AC2,OsCYP71AK1, OsCYP71T11, CYP71T11,OsCYP71C6,Oscyp71Z8, OsCYP71Z3, CYP71Z3,OsCYP71AF1,OsCYP71Q1,OsCYP92A9, OsCYP71W6, CYP71W6,OsCYP76L1, OsCYP76-12, CYP76-12, OsCYP71E4, CYP71E4,OsF3'H, F3'H, OsF3'H8, OsCYP71W8, CYP71W8,OsCYP71T2,OsCYP76M6, OsCYP76-5, CYP76-5, OsCYP71T5, CYP71T5,OsCYP71AB12,OsCYP71X2,OsCYP71K3,OsCYP71K4,OsCYP76-13, OsCYP71T10, CYP71T10,OsCYP71Z8,OsCYP76-6, OsCYP71AB8, CYP71AB8,OsCYP71W1, OsCYP71W2, CYP71W2,OsCYP71S3,OsCYP71P6,OsCYP75B4, OsC5'H, C5'H, OsF3'H9, F3'H9, OsCYP71P2, CYP71P2,OsCYP71Z1,OsCYP71E3,OsCYP71S2,OsCYP71AK2, OsCYP71AK, CYP71AK,OsCYP71C4,OsCYP71P4,OsCYP71AF2,OsCYP71U6,OsCYP93G2, OsF2H, F2H, OsCYP71S1, CYP71S1,OsCYP71K2,OsCYP71E5, OsCYP71E1, CYP71E1,OsCYP71K1,OsCYP71V1,OsCYP71X1,OsCYP71U3,OsCYP71T3,OsCYP76-17, OsCYP71AB2, CYP71AB2,OsCYP71AB6,OsCYP71K6,OsCYP71Y1,OsCYP71AB14,OsF5HL2, CYP84A6, OsCYP84A6, OsF5H1, F5H1, OsCYP71AB10, CYP71AB10,Oscyp71Z6, OsCYP71Z5, CYP71Z5,OsCYP71U5,OsCYP71AB9,OsCYP71W4,OsEnS-27, OsCYP71X3,OsCYP71T6,OsSL, sl (spl1), sl*, sl, spl1, CYP71P1, Os CYP71P1, T5H, OsT5H, CYP71A1, OsCYP71A1, OsLLM1, LLM1, LLM1/OsSL, ELL1, OsELL1, ELL1/SL, OsT5H1,OsCYP93G1, OsFNSII, FNSII, OsCYP71S4, CYP71S4,OsCYP71V2,OsF3'H1, OsCYP71U1, CYP71U1, OsCYP706C2, CYP706C2,OsEnS-28, OsCYP71X4,OsCYP71V4,OsCYP93F1, OsCYP71AB11, CYP71AB11,OsCYP76M10, OsCYP76-10, CYP76-10, OsCYP71T9, CYP71T9,OsF3'H6, OsF3'H7, F3'H6, CYP92A8, OsCYP92A8, OsCYP71W7, CYP71W7,OsCYP76-16, OsCYP71AB1, CYP71AB1,OsCYP71C2,Cyt P450 81E1, OsCYP81E1, OsCYP71U9, CYP71U9,OsCYP71W9,OsF3'H4, OsCYP71U11, CYP71U11,OsCYP71V3,OsCYP71W3,OsCYP71C16, OsCYP71C7, CYP71C7,Oscyp71Z1, OsCYP71Z7, CYP71Z7,OsCYP71U4,OsCYP71Z, CYP71Z, OsCYP71X5,OsCYP71C1,OsCYP71AD,OsCYP71AC1,OsCYP71C5,OsCYP71U2,OsCYP71T1,OsF3'H2, OsCYP71W1, CYP71W1,OsCYP76M1, OsCYP76-9, CYP76-9, OsCYP71T8, CYP71T8,OsCYP71C8,OsC3H1, OsC3'H, C3'H, OsCYP71P5, CYP71P5,OsCYP71AB13,OsCYP92C21, OsCYP71AB7, CYP71AB7,bel, bel-a(8077S), bel-b(=bsl, Norin8m), CYP81A6, OsCYP81A6, OsCYP81Q32, CYP81Q32, OsCYP71U8, CYP71U8,OsCYP81A5, OsCYP71U7, CYP71U7,CYP76M9, OsCYP76-7, CYP76-7, OsCYP71T7, CYP71T7,OsCYP71Y3,OsF3'H3, OsCYP71W5, CYP71W5,Cyt P450 71E1, OsCYP71E1, OsCYP71E2, CYP71E2,OsCYP71AB3,OsCYP71Z9,OsCYP71AB4,OsF3'H, OsCYP75B3, CYP75B3, OsF3'H10, F3'H10, OsCYP71P3, CYP71P3,OsCYP71U12,OsCYP71AA3, OsCYP71AA1, CYP71AA1,Oscyp71Z7, OsCYP71Z6, CYP71Z6,OsCYP76M5, OsCYP76-2, CYP76-2, OsCYP71T4, CYP71T4,OsCYP71AA2,OsCYP71Y5, OsCYP71K5, CYP71K5,OsCYP71AB5,OsCYP71P1,OsCYP71R1,Oscyp71Z4, OsCYP71Z2, CYP71Z2
53750	37641387	Jan R., Kim N., Asaf S., Lubna, Asif S., Du X.X., Kim E.G., Jang Y.H., Kim K.M.	OsCM regulates rice defence system in response to UV light supplemented with drought stress.	Plant Biol (Stuttg)	25(6)	902-914	2023	RAB7B3,UVR8,DREB1A,WRKY104,_,TSA	OsRab7B3, Rab7B3, OsRab7, Rab7,OsUVR8,OsDREB1A, Os DREB1A, CBF3, OsCBF3, OsDREB1A/OsCBF3, ERF24, OsERF24, OsERF024, OsERF#024, AP2/EREBP#114, AP2/EREBP114, OsDREBL,OsWRKY104, CRPG32, OsCRPG32,CM, OsCM,OsTSA, pOsTSA, TSbeta, TSA1, OsTSA1
53751	37727854	Mackon E., Jeazet Dongho Epse Mackon GC., Yao Y., Guo Y., Ma Y., Dai X., Jandan T.H., Liu P.	Integrative HPLC profiling and transcriptome analysis revealed insights into anthocyanin accumulation and key genes at three developmental stages of black rice (<i>Oryza sativa</i>. L) caryopsis.	Front Plant Sci	14	1211326	2023	TTG1A,PA,RD,GL1D,GSTU34,ANS	OsWD40-50, WD40-50, OsTTG1A, OsTTG1, TTG1 ,OsbHLH015, OsbHLH15, bHLH15, OsGL3B, GL3B, OsMYC6, MYC6, OsPa, Pa, OsHLH2, HLH2,Rd, DFR, OsDFR, OS-DFR, OsDFR1, DFR1, DFR-1,OsMyb3, OSMYB3, MYB3, OsGL1D, OsMYB46, MYB46, Kala3, OsKala3, SMG3, OsSMG3, Os2R_MYB39, 2R_MYB39,OsGSTU34,ANS, OsANS1, ANS1, LDOX, LDOX1, OsLDOX, OsLDOX1
53752	37687380	Feij&#xf3; ADR., Viana V.E., Balbinot A., Fipke M.V., Souza G.M., do Amarante L., Avila L.A.	Water Deficit at Vegetative Stage Induces Tolerance to High Temperature during Anthesis in Rice.	Plants (Basel)	12(17)		2023	HSP16.9A,CTHSP70-1,MED37_1	Oshsp16.9A, OsHsp16.9A, HSP16.9A, OsHSP16.9A-CI,OsctHSP70-1, ctHSP70-1, OsMed37_6, Med37_6, OsHSP70.6, HSP70.6,OsMed37_1, Med37_1, OsHSP70, OsHSP70.1, HSP70.1
53753	37653341	Song T., Tian Y.Q., Liu C.B., Gao Y.Q., Wang Y.L., Zhang J., Su Y., Xu L.N., Han M.L., Salt D.E., Chao D.Y.	A new family of proteins is required for tethering of Casparian strip membrane domain and nutrient homoeostasis in rice.	Nat Plants			2023	GAPLESS3,GAPLESS1,GAPLESS2	OsGAPLESS3,OsGAPLESS1,OsGAPLESS2
53754	37711286	Zheng Y., Thi K.M., Lin L., Xie X., Khine E.E., Nyein E.E., Lin M.H.W., New W.W., Aye S.S., Wu W.	Genome-wide association study of cooking-caused grain expansion in rice (<i>Oryza sativa</i> L.).	Front Plant Sci	14	1250854	2023	FLO5,WX1,MT2B,ALK,SSIIIB	OsSSIIIa, SSIII-2, OsSSIII-2, OsSS3A, SS3A, SS3a, OsSSSIIIa, SSIIIa, Flo5,wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx,OsMT2b, MT2b, OsMT-I-2c, MT-I-2c, MT2C, MT2BL, OsMT2C, OsMT2BL, MTE, OsMT2b1, OsMT2b2, MT2b1, MT2b2, MTb, met1, OsMTe, OsMT-I-2c, OsB22EL8, MTe, MT-I-2c, B22EL8,alk, SSII-3, OsSSIIa, OsSSII-3, SSIIa, SSS2A, OsSSIIaChr6, SS2a,OsSSIIIb. SSIII-1, SSIIIa
53755	37660606	Guan X., Zhang Y., Zhou L., Asad M.A.U., Zhao Q., Pan G., Cheng F.	Disruptions of sugar utilization and carbohydrate metabolism in rice developing anthers aggravated heat stress-induced pollen abortion.	Plant Physiol. Biochem.	202	107991	2023		
53756	37643701	Chen Z.J., Huang J., Li S., Shao J.F., Shen R.F., Zhu X.F.	Salylic acid minimize cadmium accumulation in rice through regulating the fixation capacity of the cell wall to cadmium.	Plant Sci.	336	111839	2023		
53757	37413992	Ma X., Nian J., Yu H., Zhang F., Feng T., Kou L., Zhang J., Wang D., Li H., Chen L., Dong G., Xie X., Wang G., Qian Q., Li J., Zuo J.	Linking glucose signaling to nitrogen utilization by the OsHXK7-ARE4 complex in rice.	Dev. Cell	58(16)	1489-1501.e5	2023		
53758	37632539	Tseng T.S., Rajendran S.K., Liu Y.H., Wu S.J., Lu C.A., Yeh C.H.	Overexpression of OsHsp 18.0 in rice enhanced tolerance to heavy metal stress.	Plant Cell Rep.	42(11)	1841-1843	2023		
53759	37615062	Xu C., Chen B., Huang S., Deng Z., Wang T.	A point mutation in the rice alpha-tubulin gene OsTUBA3 causes grain notching.	New Phytol.	240(3)	1052-1065	2023		
53760	37648175	Velmurugan S., Ashajyothi M., Charishma K., Kumar S., Balamurugan A., Javed M., Karwa S., Prakash G., Subramanian S., Gogoi R., Eke P., Kumar A.	Enhancing defense against rice blast disease: Unveiling the role of leaf endophytic firmicutes in antifungal antibiosis and induced systemic resistance.	Microb. Pathog.	184	106326	2023		
53761	37574927	Guo Y., Xu X., Lin J., Li H., Guo W., Wan S., Chen Z., Xu H., Lin F.	The herbicide bensulfuron-methyl inhibits rice seedling development by blocking calcium ion flux in the OsCNGC12 channel.	Plant J.			2023		
53762	37628883	Mao X., Zheng X., Chen W., Li C.	Characterization and Gene Mapping of an Open-Glume <i>Oryza sativa</i> L. Mutant.	Int J Mol Sci	24(16)		2023	MADS22,SNB,DL,RAP1A,REP1,MADS13,SL1,MFO1,PAP2,RAP1B,MADS57	OsMADS22, RMD1, DLN68, OsDLN68,AP2/EREBP#073, AP2/EREBP73, AP2-3, OsAP2-3, SSH1, OsSSH1, OsSNB, DLN181, DLN181a, DLN181b, OsDLN181, OsDLN181a, OsDLN181b, SUI4, OsSUI4, SUI4/SNB,OsDL, dl(lop), lop, dl, dl1, OsDRPq3, DRPq3,OsMADS15, FDRMADS3, RMADS215, MADS15, DEP,OsTCP24, REP1, TCP24, SDP1, SDP1/REP1, OsTb2, Tb2 ,OsMADS13, MAF1, RMADS206,sl1(t), sl1, stl1, opb, OPB1, ps, PS, OPB, DLN2, OsDLN2, OsJAG, JAG, OsJAG.1, OsJAG.2, ZOS1-02, OsZOS1-02,OsMADS6, MADS6, OsMFO1,MADS34, OsMADS34, RMADS212/RMADS217/RMADS221, OsPAP2/MADS34, MADS34/PAP2, PAP2/OsMADS34, OsMADS34/PAP2, OsMADS19,MADS14, OsMADS14, FDRMADS6, RMADS211, AGL10,OsMADS57, MADS-57
53763	37574840	Teng S., Liu Q., Chen G., Chang Y., Cui X., Wu J., Ai P., Sun X., Zhang Z., Lu T.	OsbHLH92, in the noncanonical brassinosteroid signaling pathway, positively regulates leaf angle and grain weight in rice.	New Phytol.	240(3)	1066-1081	2023		
53764	37628959	Tang X., Zhong W., Wang K., Gong X., Xia Y., Nong J., Xiao L., Xia S.	Regulation of Grain Chalkiness and Starch Metabolism by FLO2 interaction factor 3, a bHLH transcription factor in <i>Oryza sativa</i>.	Int J Mol Sci	24(16)		2023	BHLH182,SUT1,BGLU28,DPE1,FLO2,AMY2A,BAMY1,PME4	OsbHLH182, bHLH182, OsFIF3, FIF3,OsSUT1, OsSUT2,Os8bglu28, OsBGlu28,OsDPE1, OsDpe1, Dpe1 ,flo2, flo3(t), Osflo2, Osflo3(t), Osflo-2, flo-2, FLO2-1, FLO2-2,Amy2A*(RAmy2A), AMY1.5, AMYC2, RAmy2A, Amy4, Amy2A,OsSTA246, STA246, OsBamy1, Bamy1, BAM2, OsBAM2, OsBmy9, Bmy9, BMY5, OsBMY5,OsPME4
53765	37571976	Zhang A., Shan T., Sun Y., Chen Z., Hu J., Hu Z., Ming Z., Zhu Z., Li X., He J., Liu S., Jiang L., Dong X., Wu Y., Wang Y., Liu Y., Li C., Wan J.	Directed evolution rice genes with randomly multiplexed sgRNAs assembly of base editors.	Plant Biotechnol. J.			2023	ACC1 	OsACC1 
53766	37636110	Zeng W., Li H., Zhang F., Wang X., Rehman S., Huang S., Zhang C., Wu F., Li J., Lv Y., Zhang C., Li M., Li Z., Shi Y.	Functional characterization and allelic mining of <i>OsGLR</i> genes for potential uses in rice improvement.	Front Plant Sci	14	1236251	2023	GLR3.8,GLR3.4,GLR9.1,GLR4.4,GLR4.9,GLR4.2,GLR4.6,GLR4.5,GLR3.6,GLR3.1,GLR1.1,GLR3.7,GLR2.4,GLR9.2,GLR4.1,GLR3.3,GLR2.2,GLR4.3,GLR4.7,GLR4.8,GLR2.1,GLR1.3,_,GLR1.2,GLR2.3,GLR3.5	OsGLR3.8, OsGLR9.9, GLR9.9,OsGLR3.4, OsGLR6.11, GLR6.11,OsGLR9.1,OsGLR4.4, OsGLR6.5, GLR6.5,OsGLR4.9, OsGLR1.3, GLR1.3, OsGLR6.10, GLR6.10,OsGLR4.2, OsGLR6.3, GLR6.3 ,OsGLR4.6, OsGLR6.7, GLR6.7,OsGLR4.5, OsGLR6.6, GLR6.6,OsGLR3.6, OsGLR3.4, GLR3.4, OsGLR7.1, GLR7.1,OsGLR3.2, GLR3.2, OsGLR3.1, OsGLR4.1, GLR4.1,OsGLR1.1, OsGLR1.2, GLR1.2, OsGLR9.8, GLR9.8,OsGLR3.7, OsGLR7.2, GLR7.2,OsGLR2.4, OsGLR9.6, GLR9.6,OsGLR9.2,OsGLR4.1, OsGLR6.2, GLR6.2,OsGLR3.3, OsGLR3.5, GLR3.5, OsGLR6.1, GLR6.1,OsGLR2.2, OsGLR2.1, GLR2.1, OsGLR9.4, GLR9.4,OsGLR4.3, OsGLR6.4, GLR6.4,OsGLR4.7,OsGLR6.8, GLR6.8,OsGLR4.8, OsGLR6.9, GLR6.9,OsGLR2.1, OsGLR2.2, GLR2.2, OsGLR9.3, GLR9.3,OsGLR1.3, OsGLR1.1, GLR1.1, OsGLR9.7, GLR9.7,OsGLR3.1, GLR3.1, OsGLR3.2, GLR3.2, OsGLR2.1, GLR2.1,OsGLR1.2, OsGLR1.4, GLR1.4, OsGLR2.2, GLR2.2,OsGLR2.3, OsGLR9.5, GLR9.5,OsGLR3.5, OsGLR3.3, GLR3.3, OsGLR6.12, GLR6.12
53767	37596557	Zhu X., Chen L., Zhang Z., Li J., Zhang H., Li Z., Pan Y., Wang X.	Genetic-based dissection of resistance to bacterial leaf streak in rice by GWAS.	BMC Plant Biol.	23(1)	396	2023	ABA1,RBLS2,RBLS1,RBLS4,PSKR1,RBLS3,RBLS5	OsABA1, Zep1, OsAba1, Aba2, OsAba2, OsZep1, Zep, OsZep, Aba1, OsABA2, Osaba1, OsZEP-1, OsZEP, OSZEP1, ZEP1, ZEP,ASR1, OsAsr1, OsASR3, ASR3, Asr3, OsRBLS2,OsRBLS1,OsRBLS4,OsPSKR1, OsPSKR10, PSKR10,OsRBLS3,PTR3, OsPTR3, PTR3-A, OsPTR3-A, OsNPF5.5, NPF5.5, OsRBLS5
53768	37662146	Navea I.P., Maung P.P., Yang S., Han J.H., Jing W., Shin N.H., Zhang W., Chin J.H.	A meta-QTL analysis highlights genomic hotspots associated with phosphorus use efficiency in rice (<i>Oryza sativa</i> L.).	Front Plant Sci	14	1226297	2023	MIOX,HSFC2B,ARF8,RING141,FER2,WRKY64,SPX-MFS3,YUCCA11	OsMIOX,HSfC2b, OsHsfC2b, OsHsf-16, HSF16, OsHSF16,OsARF8,OsRING141,OsFER2, OsFer2,OsWRKY64,OsSPX-MFS3,OsYUCCA11, OsYUC11, YUC11
53769	37598294	Jiang M., Song Y., Yang R., Zheng C., Zheng Y., Zhang H., Li S., Tan Y., Huang J., Shu Q., Li R.	Melatonin activates the OsbZIP79-OsABI5 module that orchestrates nitrogen and ROS homeostasis to alleviate nitrogen-limitation stress in rice.	Plant Commun		100674	2023	CYP99A3,GLT1,LEA2,SL,PRX117,LEA3-1,ALN,AMT1;1,BZIP79,GLN1;2,ABI5	OsCYP99A3,OsGLT1, OsNADH-GOGAT1, NADH-GOGAT1, OsNADH-GOGAT, GOGAT, NADH-GOGAT, OsGOGAT1, GOGAT1, OsGLU1,OsLEA2, OsLEA4, LEA4,OsSL, sl (spl1), sl*, sl, spl1, CYP71P1, Os CYP71P1, T5H, OsT5H, CYP71A1, OsCYP71A1, OsLLM1, LLM1, LLM1/OsSL, ELL1, OsELL1, ELL1/SL, OsT5H1,prx117, OsPRX117, OsPRX47, PRX47,OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3, OsLEA3A, LEA3A,OsALN,OsAMT1;1, OsAMT1:1, OsAMT1, AMT1-1, AMT1, OsAMT1p, OsAMT1-1, Osamt1-1, "OsAMT1,1", OsAMT1.1, AMT1.1, FCO12,OsbZIP79,OsGLN1;2, GSr, RGS8, OsGS1;2, GS1;2, GS1, OsGS1-2, GS1-2, OsGS1.2, GS1.2,OsABI5, OsbZIP10, OsABF1, OREB1, OsABI5-1, OsABI5-2, OsOREB1, OREB1 
53770	37631206	Liu Y., Zhang H., Feng W., Lin X., Gao A., Cao Y., Yang Q., Wang Y., Li W., Fu F., Yu H.	The Maize ZmBES1/BZR1-9 Transcription Factor Accelerates Flowering in Transgenic <i>Arabidopsis</i> and Rice.	Plants (Basel)	12(16)		2023	RNS4,KCS2,GNP1,BTBN19,CCR19	OsRNS4, OsRRP, RNaseDIS,KCS, OsKCS2,GA20OX1, OsGA20ox1, 20ox1, GA20ox-1, ga20ox1, Os20ox, C20OX2, OsGA20ox2, OsGA20ox-1, GA20ox1, OsGNP1,OsBTBN19,OsCCR19 
53771	37739196	Sun H., Sun J., Yuan Z., Li F., Li X., Li J., Du Y., Wang F.	A Tos17 transposon insertion in OsCesA9 causes brittle culm in rice.	Gene	890	147818	2024		
53772	37738159	Wu H., He Q., He B., He S., Zeng L., Yang L., Zhang H., Wei Z., Hu X., Hu J., Zhang Y., Shang L., Wang S., Cui P., Xiong G., Qian Q., Wang Q.	Gibberellin signaling regulates lignin biosynthesis to modulate rice seed shattering.	Plant Cell			2023		
53773	37757885	Tsuda K., Maeno A., Nonomura K.I.	Heat shock-inducible clonal analysis reveals the stepwise establishment of cell fate in the rice stem.	Plant Cell			2023		
53774	37392473	Jin G., Qi J., Zu H., Liu S., Gershenzon J., Lou Y., Baldwin I.T., Li R.	Jasmonate-mediated gibberellin catabolism constrains growth during herbivore attack in rice.	Plant Cell	35(10)	3828-3844	2023	BHLH9,GA2OX7,GA2OX3	OsbHLH009, bHLH009, OsMYC2, MYC2,OsGA2ox7,OsGA2ox3, ga2ox 3, OsGA2ox-3, GA2ox3, GA2ox-3, GA2ox4
53775	37738656	Shen C., Zhang Y., Li G., Shi J., Wang D., Zhu W., Yang X., Dreni L., Tucker M.R., Zhang D.	MADS8 is indispensable for female reproductive development at high ambient temperatures in cereal crops.	Plant Cell			2023		
53776	37490037	Frungillo L.	Growth-defense tradeoff in rice: The role of gibberellic acid catabolism.	Plant Cell	35(10)	3635-3636	2023	GA2OX3,BHLH9,GA2OX7	OsGA2ox3, ga2ox 3, OsGA2ox-3, GA2ox3, GA2ox-3, GA2ox4,OsbHLH009, bHLH009, OsMYC2, MYC2,OsGA2ox7
53777	37738653	Zhou C., Lin Q., Ren Y., Lan J., Miao R., Feng M., Wang X., Liu X., Zhang S., Pan T., Wang J., Luo S., Qian J., Luo W., Mou C., Nguyen T., Cheng Z., Zhang X., Lei C., Zhu S., Guo X., Wang J., Zhao Z., Liu S., Jiang L., Wan J.	A CYP78As-smg4-COP&#x2161; pathway promotes grain size.in rice.	Plant Cell			2023	SMG4	OsBE1, OsSMG4, BE1
53778	37486356	Bentham A.R., De la Concepcion JC., Benjumea J.V., Kourelis J., Jones S., Mendel M., Stubbs J., Stevenson C.E.M., Maidment J.H.R., Youles M., Zdrza&#x142;ek R., Kamoun S., Banfield M.J.	Allelic compatibility in plant immune receptors facilitates engineering of new effector recognition specificities.	Plant Cell	35(10)	3809-3827	2023	PIKP,PIK,PIKM	Pik-p, Pi-kp, Pikp, Pikp-1, Pikp-2,Pik, RMg8, Pi-k, Pik-2, Pik-1, Pik1, Pik2, Pik-H4, Pikp-1, Pikh-1, Pik1-H4, Pikh-2, Pik2-H4,Pik-m, Pi-m, Pi-km, Pikm, Pi m, Pikm1-TS, Pikm2-TS, Pi-km1, Pi-km2
53779	37474339	Molla K.A.	From the archives: Nuclear import of pathogenic noncoding RNAs, ubiquitination and the control of heading date in rice, and the use of ribozymes to modulate gene expression.	Plant Cell	35(10)	3627-3628	2023	SE1,HD3B,HIP1	Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, OsHd1,  Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,Hd17, EF7, Ef7, OsELF3-1, ELF3-1, OsELF3, ELF3, ELF3_chr.6, OsELF3.1, ELF3.1, OsELF3a, ELF3a,OsHIP1, HAF1, OsHAF1,  OsRING275, RING275
53780	37679493	Gu Z., Gong J., Zhu Z., Li Z., Feng Q., Wang C., Zhao Y., Zhan Q., Zhou C., Wang A., Huang T., Zhang L., Tian Q., Fan D., Lu Y., Zhao Q., Huang X., Yang S., Han B.	Structure and function of rice hybrid genomes reveal genetic basis and optimal performance of heterosis.	Nat. Genet.	55(10)	1745-1756	2023	DLT,GHD7,HD5,RAG,SE1,TMS5,NAL1,DEP1,_,RFT1,WX1,GW7,GW5,LHS1,ALK,LK3	dlt, OsGRAS32, OsDLT, OsDLT1, DTL1, OsGRAS-32, OsGRAS32, GRAS-32, GRAS32, SMOS2/DLT, SMOS2, OsSMOS2, OsGS6, GS6,Ghd2, Ghd7, OsGhd7, OsCCT26, OsCMF8, OsI, Ghd7/Hd4, Hd4, EH7-1/Hd4, Ghd7-0a, EH7-1, EH7/Ghd7, EH7, OsEH7, GLW7.1, OsGLW7.1,Hd5(t)*, Hd5, qHD5, HAP3H, OsHAP3H, NF-YB, CBF-A, DTH8 , qHD5(t)*, Ghd8, Ghd8/DTH8, Lhd1, NF-YB11, OsNF-YB11, NFYB11, LH8, DTH8/Ghd8, RH8, DTH8/Ghd8/LHD1, CAR8, DTH8/Ghd8/ OsHAP3H, EF8, OsEF8,MADS3, OsMADS3, OsMADS3(t), RMADS222, RAG1, rf3,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, OsHd1,  Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,TRZ1, OsTRZ1, OsaTRZ1, OsTMS5,nal1, cul1, GPS, SPIKE, SPIKE/LSCHL4/NAL1/GPS, SPIKE/NAL1, LSCHL4, OsNAL1,OsDEP1, EP, qPE9-1, DN1, DEP1/DN1/qPE9-1, qNGR9, qDEP1, RGG4/DEP1/DN1/qPE9-1/OsGGC3, RGG4, OsDN1, OsGGC3, GGC3,Rf4, Rf-4, PPR782a, PPR9, PPR3,FT-L 3, OsFTL3, FTL3, FT-L3, RFT, OsRFT1,wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx,GL7, OsGL7, OsGW7, qGW7, qGL7, SLG7, GL7/GW7/SLG7, qPY7, GL7/SLG7, Chalk7, OsChalk7,qSW5/GW5, GSE5, OsGSE5, OsGW5, qSW5,OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO, OsLHS1, OsLG3b, LG3b, qLGY3, LGY3, DLN80, OsDLN80, OLR, OsOLR, GW3p6, OsGW3p6, OsMADS1GW3p6, MADS1GW3p6, qLGY3/OsLG3b/GW3p6,alk, SSII-3, OsSSIIa, OsSSII-3, SSIIa, SSS2A, OsSSIIaChr6, SS2a,lk3(t), lk3(t)*, SG3, GS3, SG3-GS3, OsGW3, OsGS3, RGG3/GS3/Mi/OsGGC1, RGG3, Mi, OsGGC1, GGC1, OsSYL3, SYL3, TT2, OsTT2
53781	37799560	Wen Y., Chairattanawat C., Vo K.T.X., Liu J., Zhang J., Pan T., Kim D.Y., Martinoia E., Zhong C.Y., Wang M.H., Jeon J.S., Song W.Y.	VOZ1 and VOZ2 transcription factors regulate arsenic tolerance and distribution in rice and Arabidopsis.	Front Plant Sci	14	1209860	2023	VOZ2,EIP8	OsVOZ2,OsEIP8, OsVOZ1, VOZ1 
53782	37706533	Jin X., Li X., Xie Z., Sun Y., Jin L., Hu T., Huang J.	OsNUCLEAR FACTOR-YC5 modulates rice seed germination by regulating synergistic hormone signaling.	Plant Physiol.			2023		
53783	37726366	Mandal S.N., Sanchez J., Bhowmick R., Bello O.R., Van-Beek CR., de Los Reyes BG.	Novel genes and alleles of the BTB/POZ protein family in Oryza rufipogon.	Sci Rep	13(1)	15466	2023		
53784	37722508	Fan F., Cheng M., Yuan H., Li N., Liu M., Cai M., Luo X., Ahmad A., Li N., Li S.	A transposon-derived gene family regulates heading date in rice.	Plant Sci.	337	111871	2023		
53785	37709234	Bisht N., Anshu A., Singh P.C., Chauhan P.S.	Comprehensive analysis of OsJAZ gene family deciphers rhizobacteria-mediated nutrient stress modulation in rice.	Int. J. Biol. Macromol.	253(Pt 3)	126832	2023		
53786	37715733	Panchal P., Bhatia C., Chen Y., Sharma M., Bhadouria J., Verma L., Maurya K., Miller A.J., Giri J.	A citrate efflux transporter important for manganese distribution and phosphorus uptake in rice.	Plant J.			2023		
53787	37597286	Bhatta D., Adhikari A., Kang S.M., Kwon E.H., Jan R., Kim K.M., Lee I.J.	Hormones and the antioxidant transduction pathway and gene expression, mediated by Serratia marcescens DB1, lessen the lethality of heavy metals (As, Ni, and Cr) in Oryza sativa L.	Ecotoxicol. Environ. Saf.	263	115377	2023	PCS1,MTP1	OsPCS1, OsPCS2, PCS2, OsPCS15, PCS15,OsMTP1
53788	37704940	Chen K., Wang Y., Nong X., Zhang Y., Tang T., Chen Y., Shen Q., Yan C., L&#xfc; B.	Characterization and in silico analysis of the domain unknown function DUF568-containing gene family in rice (Oryza sativa L.).	BMC Genomics	24(1)	544	2023	DUF568.3,DUF568.2,DUF568.8,ARP1,DUF568.7,DUF568.1,PLS4,DUF568.6,DUF568.5,DUF568.4	OsDUF568.3,OsDUF568.2,OsDUF568.8,OsARP1, OsDRM1, DRM1,OsDUF568.7,OsDUF568.1,OsPLS4,OsDUF568.6,OsDUF568.5,OsDUF568.4
53789	37597655	Li J., Wang S., Miao Y., Wan Y., Li C., Wang Y.	Mining and modification of Oryza sativa-derived Squalene epoxidase for improved &#x3b2;-amyrin production in Saccharomyces cerevisiae.	J. Biotechnol.	375	1-11	2023		
53790	37735868	Xu Z., Xu X., Li Y., Liu L., Wang Q., Wang Y., Wang Y., Yan J., Cheng G., Zou L., Zhu B., Chen G.	Tal6b/AvrXa27A, a Hidden TALE Targeting both the Susceptibility Gene OsSWEET11a and the Resistance Gene Xa27 in Rice.	Plant Commun		100721	2023	XA27,XA13	Xa27(t), Xa27(t)*, Xa27,xa13, Xa13, Os8N3, Os-8N3, 8N3, OsSWEET11, SWEET11, OsSWEET11/Xa13, Xa13/Os8N3/SWEET11, Os8N3/Xa13, OsSWEET11/Os8N3, OsSWEET11a, SWEET11a
53791	37715970	Chen X., Liu C., Wang H., Liu Q., Yue Y., Duan Y., Wang Z., Zheng L., Chen X., Wang Y., Huang J., Xu Q., Pan Y.	Ustilaginoidea virens-secreted effector Uv1809 suppresses rice immunity by enhancing OsSRT2-mediated histone deacetylation.	Plant Biotechnol. J.			2023	SGT1,PR1B,SIR2B	OsSgt1, OsSGT1, Os SGT1,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1, OsPR1a, PR1a,Sir2, OsSIR2b, OsSir2b, OsSRT2, SRT2, DLN255, OsDLN255, OsSRT702, SRT702
53792	37723121	Seo J.S., Kim S.H., Shim J.S., Um T., Oh N., Park T., Kim Y.S., Oh S.J., Kim J.K.	The rice NUCLEAR FACTOR-YA5 and MICRORNA169a module promotes nitrogen utilization during nitrogen deficiency.	Plant Physiol.			2023	HAP2J,MIR169,GLN1;1,GLT2,GLT1,NPF6.3,GLN1;2,NPF6.5,AMT1;1	OsHAP2J, NF-YA, CBF-B, NF-YA5, OsNF-YA5, NFYA5,miR169, osa-miR169, osa-MIR169a, miR169a, osa-miR169a,OsGLN1;1, GS1, RGS28, OsGS1;1, GS1;1, OsGS, GS1, OsGS1, GLN1-1, OsGS1-1, GS1-1, GS1.1, OsGS1.1,OsGLT2, OsNADH-GOGAT2, NADH-GOGAT2, OsGOGAT2, GOGAT2, OsGLU2, GLU2,OsGLT1, OsNADH-GOGAT1, NADH-GOGAT1, OsNADH-GOGAT, GOGAT, NADH-GOGAT, OsGOGAT1, GOGAT1, OsGLU1,OsNRT1.1A, NRT1.1A, OsNRT1.1A/ OsNPF6.3, OsNPF6.3,OsGLN1;2, GSr, RGS8, OsGS1;2, GS1;2, GS1, OsGS1-2, GS1-2, OsGS1.2, GS1.2,OsNRT1.1B, NRT1.1B, OsNPF6.5,OsAMT1;1, OsAMT1:1, OsAMT1, AMT1-1, AMT1, OsAMT1p, OsAMT1-1, Osamt1-1, "OsAMT1,1", OsAMT1.1, AMT1.1, FCO12
53793	37698658	Li C., Chen Z., Deng Y., Jiang S., Su Y., Yang S., Lin Y., Tian D.	iTRAQ-based protein profiling and functional identification of four genes involved in rice basal resistance against Magnaporthe oryzae in two contrasting rice genotypes.	Stress Biol	3(1)	39	2023	_	
53794	37731238	Hao X.H., Hu S., Zhao D., Tian L.F., Xie Z.J., Wu S., Hu W.L., Lei H., Li D.P.	<i>OsGA3ox</i> genes regulate rice fertility and plant height by synthesizing diverse active GA.	Yi Chuan	45(9)	845-855	2023		
53795	37403194	Liu H., Li J., Wang S., Hua J., Zou B.	CHROMATIN REMODELING 11-dependent nucleosome occupancy affects disease resistance in rice.	Plant Physiol.	193(2)	1635-1651	2023		
53796	37753661	Ji L., Zhang Z., Liu S., Zhao L., Li Q., Xiao B., Suzuki N., Burks D.J., Azad R.K., Xie G.	The OsTIL1 lipocalin protects cell membranes from reactive oxygen species damage and maintains the 18:3-containing glycerolipid biosynthesis under cold stress in rice.	Plant J.			2023		
53797	37833931	Saputro T.B., Jakada B.H., Chutimanukul P., Comai L., Buaboocha T., Chadchawan S.	<i>OsBTBZ1</i> Confers Salt Stress Tolerance in <i>Arabidopsis thaliana</i>.	Int J Mol Sci	24(19)		2023	BTBZ1,BTBN3,BTBN7,BT	OsBTBZ1,OsBTBN3,OsBTBN7,OsBT,  OsBTBZ2, BTBZ2
53798	37776021	Xie W., Cao W., Lu S., Zhao J., Shi X., Yue X., Wang G., Feng Z., Hu K., Chen Z., Zuo S.	Knockout of transcription factor OsERF65 enhances ROS scavenging ability and confers resistance to rice sheath blight.	Mol. Plant Pathol.			2023		
53799	37790624	Dong W., Tu J., Deng W., Zhang J., Xu Y., Gu A., An H., Fan K., Wang R., Zhang J., Kui L., Li X.	Genome-wide identification of <i>DUF506</i> gene family in <i>Oryza</i><i>sativa</i> and expression profiling under abiotic stresses.	PeerJ	11	e16168	2023	DUF50605,DUF50601,DUF50608,DUF50609,MIR1848,DUF50604,DUF50610,MIR2925,DUF50606,DUF50602,DUF50603,MIR5809,DUF50607,MIR2927,MIR5075	OsDUF50605,OsDUF50601,OsDUF50608,OsDUF50609,miR1848, osa-miR1848, osa-MIR1848,OsDUF50604,OsDUF50610,miR2925, osa-miR2925, osa-MIR2925,OsDUF50606,OsDUF50602,OsDUF50603,miR5809, osa-miR5809, osa-MIR5809,OsDUF50607,miR2927, osa-miR2927, osa-MIR2927,miR5075, osa-miR5075, osa-MIR5075
53800	37834016	Han S., Shen Z., Gao Q., Jin N., Lou Y.	Knocking Out <i>OsRLK7-1</i> Impairs Rice Growth and Development but Enhances Its Resistance to Planthoppers.	Int J Mol Sci	24(19)		2023	WRKY45,WRKY24,HAIKU2,WRKY14,MSRMK2	OsWRKY45, OsWRKY45-1, OsWRKY45-2, WRKY45-1, WRKY45-2,OsWRKY24,OsHAIKU2, OsRLK7, RLK7, OsMEG1, MEG1,OsWRKY14,OsMSRMK2, OsMAPK5, OsMAP1, OsMPK3, OsBIMK1, OsMAPK2, MPK5, BIMK1, MAPK2, MAPK5, MPK3, OsMPK5, OsMAPK3, OsMAPK5b, MAPK3
53801	37757719	Hu Y., Lin Y., Xia Y., Xu X., Wang Z., Cui X., Han L., Li J., Zhang R., Ding Y., Chen L.	Overexpression of OsSnRK1a through a green tissue-specific promoter improves rice yield by accelerating sheath-to-panicle transport of nonstructural carbohydrates and increasing leaf photosynthesis.	Plant Physiol. Biochem.	203	108048	2023		
53802	37762662	Yang Y., Zhang Y., Sun Z., Shen Z., Li Y., Guo Y., Feng Y., Sun S., Guo M., Hu Z., Yan C.	Knocking Out <i>OsAAP11</i> to Improve Rice Grain Quality Using CRISPR/Cas9 System.	Int J Mol Sci	24(18)		2023	GLUB5,PRO13A.2,GLUA1,AAP11C,GLB1	GluB5, GLU2.3 ,Prol-19, OsEnS-94, RM1, OsRM1, pro13a.2, OsPRO13A.2, PROLM26,Glua1*, Glua1, GLUA-1, GluA-1, GluA1, Glu19, OsEnS-16,OsAAP11C, OsAAP11, AAP11,glb1(t)*, glb1(t), glb1, alpha-Glb, Glb-1, OsGlb1, Glb1, Glb, OsEnS-77
53803	37836098	Zhou Z., Liu J., Meng W., Sun Z., Tan Y., Liu Y., Tan M., Wang B., Yang J.	Integrated Analysis of Transcriptome and Metabolome Reveals Molecular Mechanisms of Rice with Different Salinity Tolerances.	Plants (Basel)	12(19)		2023	DREB1C,CDT1,_,_,MRP5,DRUS2,DREB1B,BHLH6,HIPP32,_,WRKY22,DREB1G,CAX8,ERF11,DREB1F,MRLP6	OsDREB1C, CBF1, ERF26, OsERF026, OsERF#026, OsERF26, AP2/EREBP#098, AP2/EREBP98, OsCBF2, CBF2,OsCDT1, OsCCX2, CCX2, OsNCX8, NCX8,AB2E_Ath,NRAM6,OsABCC5, OsMRP5, AB3C_Ath ,YK1, OsCrRLK1L5, CrRLK1L5, OsDRUS2, OsMRLK3, MRLK3, FLR2, OsFLR2,OsDREB1B, ERF31, OsERF031, OsERF#031, OsERF31, AP2/EREBP#169, AP2/EREBP169, OsDREB1b, OsDREB1C, OsCBF1, CBF1,OsbHLH006, bHLH006, OsbHLH6, bHLH6, RERJ1, OsRERJ1, bHLH35,OsEnS-104, OsHMP35, HMP35, OsHIPP32, OsaHIP32, HIP32, HIP7_Ath,OCT7_Ath,OsWRKY22,OsDREB1G, OsERF025, OsERF#025, OsERF25, ERF25, AP2/EREBP#138, AP2/EREBP138, OsDREB1I,OsCAX8, OsNCX13, NCX13, OsNaCa11exB, OsCCX5, CCX5, CCX5_Ath,OsERF#011, OsERF011, OsERF11, OsDERF9, DERF9, AP2/EREBP#083, AP2/EREBP83, DLN69, OsDLN69, ERF17_Ath,OsERF#027, OsERF027, OsERF27, ERF27, AP2/EREBP#081, AP2/EREBP81, OsDREB1F,OsMRLP6
53804	37403366	Okumura T., Kitajima T., Kaji T., Urano H., Matsumoto K., Inagaki H., Miyamoto K., Okada K., Ueda M.	Difference in the ligand affinity among redundant plant hormone receptors of rice OsCOI1a/1b/2-OsJAZs.	Biosci. Biotechnol. Biochem.	87(10)	1122-1128	2023		
53805	37797384	Sousa R.H., Carvalho F.E., Daloso D.M., Lima-Melo Y., Margis-Pinheiro M., Komatsu S., Silveira J.A.	Impairment in photosynthesis induced by CAT inhibition depends on the intensity of photorespiration and peroxisomal APX expression in rice.	Plant Physiol. Biochem.	203	108066	2023		
53806	37757723	Zou Y., Xu E., Fan Y., Zhang P., Zhang W., Chen X.	OsPML2, a chloroplast envelope localized transporter is involved in manganese homeostasis in rice.	Plant Physiol. Biochem.	203	108054	2023	PML2	OsPML2
53807	37674140	Kumar D., Ramkumar M.K., Dutta B., Kumar A., Pandey R., Jain P.K., Gaikwad K., Mishra D.C., Chaturvedi K.K., Rai A., Solanke A.U., Sevanthi A.M.	Integration of miRNA dynamics and drought tolerant QTLs in rice reveals the role of miR2919 in drought stress response.	BMC Genomics	24(1)	526	2023	MIR156K,MIR2919,MIR531B,BTBZ1,RBOHE,MIR531A,MIR528,MIR530,PL3,MIR3979,miR159F,MIR2091	miR156k, OsmiR156k, osmiR156k, osa-miR156k, osa-MIR156k,miR2919, osa-miR2919, osa-MIR2919,miR531b, osa-MIR531b,OsBTBZ1,rbohE, OsrbohE, Os rbohE, OsRbohE, OsNox3, Nox3, OsRboh3, Rboh3,miR531, osa-MIR531, osa-MIR531a,miR528, Osa-miR528, OsmiR528, OsMIR528, osa-MIR528, miR528*, osa-miR528, osa-miR528-5p, MIR528-T1, MIR528-T2,miR530, Osa-miR530, OsmiR530, osa-MIR530, osa-miR530 osa-miR530-3p, osa-miR530-5p,OsPL3,miR3979, osa-miR3979, osa-MIR3979osa-miR3979-3p osa-miR3979-5p,OsmiR159f, osa-MIR159f,miR2091, osa-miR2091, osa-MIR2091, Osa-MIR2091-5p 
53808	37674316	Song Y., Wan G.Y., Wang J.X., Zhang Z.S., Xia J.Q., Sun L.Q., Lu J., Ma C.X., Yu L.H., Xiang C.B., Wu J.	Balanced nitrogen-iron sufficiency boosts grain yield and nitrogen use efficiency by promoting tillering.	Mol Plant	16(10)	1661-1677	2023		
53809	37678689	Hu Q., Wu Y., Hong T., Wu D., Wang L.	OsMED16, a tail subunit of ediator complex, interacts with OsE2Fa to synergistically regulate rice leaf development and blast resistance.	Int. J. Biol. Macromol.	253(Pt 2)	126728	2023		
53810	37776672	Chae H.B., Jung Y.J., Paeng S.K., Jung H.S., Lee S.Y., Lee J.R.	Functional changes of OsTrxm from reductase to molecular chaperone under heat shock stress.	Plant Physiol. Biochem.	203	108005	2023		
53811	37688595	Ekta, Biswas D., Mukherjee G., Maiti M.K.	Rice Big Grain1 enhances biomass and plant growth-promoting traits in rhizospheric yeast Candida tropicalis.	Appl. Microbiol. Biotechnol.	107(21)	6553-6571	2023		
53812	37688678	Esmaeilzadeh-Moridani M., Esfahani M., Aalami A., Moumeni A., Khaledian M., Chaleshtori M.H.	Expression profiling of yield related genes in rice cultivars under terminal drought stress.	Mol. Biol. Rep.			2023	XTH5	OsXTH5
53813	37674315	Yoshida H., Okada S., Wang F., Shiota S., Mori M., Kawamura M., Zhao X., Wang Y., Nishigaki N., Kobayashi A., Miura K., Yoshida S., Ikegami M., Ito A., Huang L.T., Caroline Hsing YI., Yamagata Y., Morinaka Y., Yamasaki M., Kotake T., Yamamoto E., Sun J., Hirano K., Matsuoka M.	Integrated genome-wide differentiation and association analyses identify causal genes underlying breeding-selected grain quality traits in japonica rice.	Mol Plant	16(9)	1460-1477	2023	CSLA12	OsEnS-131, OsCslA12, OsMnS, MnS
53814	37687412	Li J., Meng L., Ren S., Jia C., Liu R., Jiang H., Chen J.	<i>OsGSTU17</i>, a Tau Class Glutathione S-Transferase Gene, Positively Regulates Drought Stress Tolerance in <i>Oryza sativa</i>.	Plants (Basel)	12(17)		2023	P5CS,NAC122,ERF3,CATB,DREB2A,ATP6,RAB16C,GSTU17,CATA	OsP5CS, P5CS1, OsP5CS1, OsALDH18B1, ALDH18B1, OsP5CS-1, P5CS-1,OsNAC10, NAC10, ONAC122, NAC122, OsSNAC10, SNAC10,AP37, OsAP37, OsERF3, OsERF#075, OsERF075, OsERF75, ERF75, AP2/EREBP#004, AP2/EREBP4, OsBIERF2, BIERF2, DLN23, OsDLN23,CatB, CAT-B, OsCatB, OsCATB, OsCAT1B, CAT1B, CAT2, OsCAT2,OsDREB2A, OsDREB2a, ERF40, OsERF#040, OsERF040, OsERF40, AP2/EREBP#167, AP2/EREBP167,atp6, OsPOX1, prx3, POX1,rab21, OsLEA27, rab16C, OsRAB16C, DHD,OsGSTU17, OsGST23, GST23 ,CATA1, Cat A1*, OSCAT-A, Cat2, CatA1, CAT-A, OsCatA, OsCAT, CAT, catA, OSCATA, OsCATc, OsCATA, OsCAT1A, CAT1, OsCAT1, OsCATC, OsCAT2
53815	37519744	Mlangeni A.T., Chinthenga E., Kapito N.J., Namaumbo S., Feldmann J., Raab A.	Safety of African grown rice: Comparative review of As, Cd, and Pb contamination in African rice and paddy fields.	Heliyon	9(7)	e18314	2023		
53816	37399924	Tang L., Li G., Wang H., Zhao J., Li Z., Liu X., Shu Y., Liu W., Wang S., Huang J., Ying J., Tong X., Yuan W., Wei X., Tang S., Wang Y., Bu Q., Zhang J.	Exogenous abscisic acid represses rice flowering via SAPK8-abf1-Ehd1/Ehd2 pathway.	Journal of Advanced Research			2023		
53817	37492276	Lin C.C., Lee W.J., Zeng C.Y., Chou M.Y., Lin T.J., Lin C.S., Ho M.C., Shih M.C.	SUB1A-1 anchors a regulatory cascade for epigenetic and transcriptional controls of submergence tolerance in rice.	PNAS Nexus	2(7)	pgad229	2023		
53818	37649879	Adak S., Agarwal T., Das P., Ray S., Lahiri Majumder A.	Characterization of <i>myo</i>-inositol oxygenase from rice (<i>OsMIOX</i>): influence of salinity stress in different <i>indica</i> rice cultivars.	Physiol Mol Biol Plants	29(7)	927-945	2023		
53819	37577396	Li Q., Luo S., Zhang L., Feng Q., Song L., Sapkota M., Xuan S., Wang Y., Zhao J., van der Knaap E., Chen X., Shen S.	Molecular and genetic regulations of fleshy fruit shape and lessons from <i>Arabidopsis</i> and rice.	Hortic Res	10(7)	uhad108	2023		
53820	37512993	Prodhan M.Y., Rahman M.B., Rahman A., Akbor M.A., Ghosh S., Nahar M.N., Simo, Shamsuzzoha M., Cho K.M., Haque M.A.	Characterization of Growth-Promoting Activities of Consortia of Chlorpyrifos Mineralizing Endophytic Bacteria Naturally Harboring in Rice Plants-A Potential Bio-Stimulant to Develop a Safe and Sustainable Agriculture.	Microorganisms	11(7)		2023		
53821	37440755	Qiao Y., Lv Y., Chen Z.J., Liu J., Yang H., Zhang N.	Multiple Metabolism Pathways of Bentazone Potentially Regulated by Metabolic Enzymes in Rice.	J. Agric. Food Chem.	71(29)	11204-11216	2023		
53822	37511287	Liu Z., Gui J., Yan Y., Zhang H., He J.	Transcriptomic Analysis of the Dehydration Rate of Mature Rice (<i>Oryza sativa</i>) Seeds.	Int J Mol Sci	24(14)		2023		
53823	37528982	Smet D., Opdebeeck H., Vandepoele K.	Predicting transcriptional responses to heat and drought stress from genomic features using a machine learning approach in rice.	Front Plant Sci	14	1212073	2023		
53824	37534289	Hassan M.A., Dahu N., Hongning T., Qian Z., Yueming Y., Yiru L., Shimei W.	Drought stress in rice: morpho-physiological and molecular responses and marker-assisted breeding.	Front Plant Sci	14	1215371	2023		
53825	37509804	Zheng X., Hong J., Zhang J., Gao Y., Li P., Yuan J., Li G., Xing C.	Arsenic Contents, Speciation and Toxicity in Germinated Rice Alleviated by Selenium.	Foods	12(14)		2023		
53826	37504637	Pati P., Jena M., Bhattacharya S., Behera S.K., Pal S., Shivappa R., Dhar T.	Biochemical Defense Responses in Red Rice Genotypes Possessing Differential Resistance to Brown Planthopper, <i>Nilaparvata lugens</i> (St&#xe5;l).	Insects	14(7)		2023		
53827	37514279	Ye N., Wang Y., Yu H., Qin Z., Zhang J., Duan M., Liu L.	Abscisic Acid Enhances Trehalose Content via <i>OsTPP3</i> to Improve salt tolerance in Rice Seedlings.	Plants (Basel)	12(14)		2023		
53828	37514289	Yan T., Sun M., Su R., Wang X., Lu X., Xiao Y., Deng H., Liu X., Tang W., Zhang G.	Transcriptomic Profiling of Cold Stress-Induced Differentially Expressed Genes in Seedling Stage of <i>Indica</i> Rice.	Plants (Basel)	12(14)		2023		
53829	37507977	Urmi T.A., Islam M.M., Zumur K.N., Abedin M.A., Haque M.M., Siddiqui M.H., Murata Y., Hoque M.A.	Combined Effect of Salicylic Acid and Proline Mitigates Drought Stress in Rice (<i>Oryza sativa</i> L.) through the Modulation of Physiological Attributes and Antioxidant Enzymes.	Antioxidants (Basel)	12(7)		2023		
53830	37474674	Jimmy J.L., Karn R., Kumari S., Sruthilaxmi C.B., Pooja S., Emerson I.A., Babu S.	Rice WRKY13 TF protein binds to motifs in the promoter region to regulate downstream disease resistance-related genes.	Funct. Integr. Genomics	23(3)	249	2023		
53831	37468736	Yadav R., Ramakrishna W.	MicroRNAs Involved in Nutritional Regulation During Plant-Microbe Symbiotic and Pathogenic Interactions with Rice as a Model.	Mol. Biotechnol.			2023		
53832	37467888	Lee G.H., Min C.W., Jang J.W., Wang Y., Jeon J.S., Gupta R., Kim S.T.	Analysis of post-translational modification dynamics unveiled novel insights into Rice responses to MSP1.	J Proteomics	287	104970	2023		
53833	37456874	Won S.Y., Soundararajan P., Irulappan V., Kim J.S.	<i>In-silico</i>, evolutionary, and functional analysis of CHUP1 and its related proteins in <i>Bienertia sinuspersici</i>-a comparative study across C3, C4, CAM, and SCC4 model plants.	PeerJ	11	e15696	2023		
53834	37502724	Manzeke-Kangara MG., Joy E.J.M., Lark R.M., Redfern S., Eilander A., Broadley M.R.	Do agronomic approaches aligned to regenerative agriculture improve the micronutrient concentrations of edible portions of crops? A scoping review of evidence.	Front Nutr	10	1078667	2023		
53835	37432475	Zhao H., Fu Y., Zhang G., Luo Y., Yang W., Liang X., Yin L., Zheng Z., Wang Y., Li Z., Zhu H., Huang J., Tan Q., Bu S., Liu G., Wang S., Liu Z.	GS6.1 controls kernel size and plant architecture in rice.	Planta	258(2)	42	2023		
53836	37493591	Chen J., Liu Q., Yuan L., Shen W., Shi Q., Qi G., Chen T., Zhang Z.	osa-miR162a Enhances the Resistance to the Brown Planthopper via &#x3b1;-Linolenic Acid Metabolism in Rice (<i>Oryza sativa</i>).	J. Agric. Food Chem.	71(31)	11847-11859	2023		
53837	37560028	Yi Y., Hassan M.A., Cheng X., Li Y., Liu H., Fang W., Zhu Q., Wang S.	QTL mapping and analysis for drought tolerance in rice by genome-wide association study.	Front Plant Sci	14	1223782	2023		
53838	37503807	Pathare V.S., Panahabadi R., Sonawane B.V., Apalla A.J., Koteyeva N., Bartley L.E., Cousins A.B.	Altered cell wall hydroxycinnamate composition impacts leaf and canopy-level CO2 -uptake and water use in rice.	Plant Physiol.			2023		
53839	37549571	Huang Y., Song J., Hao Q., Mou C., Wu H., Zhang F., Zhu Z., Wang P., Ma T., Fu K., Chen Y., Nguyen T., Liu S., Jiang L., Wan J.	WEAK seed dormancy 1, an aminotransferase protein, regulates seed dormancy in rice through the GA and ABA pathways.	Plant Physiol. Biochem.	202	107923	2023	BZIP72,KS1,CPS1,WSD1,KO4,D18	OsbZIP72, OsAREB2, OsABF4, ABF4, Osbzip72, OsABI5, ABI5,OsKS1, KS1, KS1A, KSL1, OsKSL1, OsKS1A, OsKS1B, OsKS1C, Ks1, Os KS1, OsTPS26, TPS6, OsTPS6,OsCPS1, OsCPS1ent, OsCPS, Os CPS1, OsTPS4, TPS4, TPS29, OsTPS29, OsCPS1-L, OsCPS1-S,,OsKO4, OsKOL4, KOS1, CYP701A8, OsCYP701A8, OsKO2, CYP701A8/OsKOL4,d18-h  (d18-I, d18h), dwf15, d25, d18, d18-k, d18-AD, d18-dy, OsGA3ox2, ga3ox2, OsGA3OX2, GA3OX2, OsGA3ox-2, GA3ox-2, GA3ox1
53840	37506651	Zhao P., Wu Z., Zheng Y., Shen J., Zhu Y., Chen Q., Wang B., Yang F., Ding Y., Liu H., Wang F., Rensing C., Feng R.	Selenite affected photosynthesis of Oryza sativa L. exposed to antimonite: Electron transfer, carbon fixation, pigment synthesis via a combined analysis of physiology and transcriptome.	Plant Physiol. Biochem.	201	107904	2023		
53841	37569388	Xu G., Deng K., Yu J., Li Q., Li L., Xiang A., Ling Y., Zhang C., Zhao F.	Genetic Effects Analysis of QTLs for Rice grain size.Based on CSSL-Z403 and Its Dissected Single and Dual-Segment Substitution Lines.	Int J Mol Sci	24(15)		2023		
53842	37521617	Mir M.S., Singh P., Bhat T.A., Kanth R.H., Nazir A., Al-Ashkar I., Kamran M., Hadifa A.A., El Sabagh A.	Influence of Sowing Time and Weed Management Practices on the Performance and Weed Dynamics of Direct Drum Seeded Rice.	ACS Omega	8(29)	25861-25876	2023		
53843	37546266	Rajonandraina T., Ueda Y., Wissuwa M., Kirk G.J.D., Rakotoson T., Manwaring H., Andriamananjara A., Razafimbelo T.	Magnesium supply alleviates iron toxicity-induced leaf bronzing.in rice through exclusion and tissue-tolerance mechanisms.	Front Plant Sci	14	1213456	2023		
53844	37501108	Chi H.Y., Ou S.L., Wang M.C., Yang C.Y.	Physiological responses and Ethylene-Response AP2/ERF Factor expression in Indica rice seedlings subjected to submergence and osmotic stress.	BMC Plant Biol.	23(1)	372	2023		
53845	37493366	Hussain M.M., Niazi N.K., Bibi I., Ali F., Al-Misned F., Hussain K., Shahid M., Rehman A., Wang H.	Unveiling the significance of foliar-applied silicon, selenium and phosphorus for the management and remediation of arsenic in two different rice genotypes.	Int J Phytoremediation		1-10	2023		
53846	37627262	Su S., Tang P., Zuo R., Chen H., Zhao T., Yang S., Yang J.	Exogenous Jasmonic Acid Alleviates Blast resistance Reduction Caused by <i>LOX3</i> Knockout in Rice.	Biomolecules	13(8)		2023		
53847	37507628	Derrien V., Andr&#xe9; E., Bernad S.	Peroxidase activity of rice (Oryza sativa) hemoglobin: distinct role of tyrosines 112 and 151.	J. Biol. Inorg. Chem.	28(6)	613-626	2023		
53848	37491485	Xu H., Bartley L., Libault M., Sundaresan V., Fu H., Russell S.	The roles of a novel CDKB/KRP/FB3 cell cycle core complex in rice gametes and initiation of embryogenesis.	Plant Reproduction	36(4)	301-320	2023		
53849	37560030	Aung K.M., Oo W.H., Maung T.Z., Min M.H., Somsri A., Nam J., Kim K.W., Nawade B., Lee C.Y., Chu S.H., Park Y.J.	Genomic landscape of the <i>OsTPP7</i> gene in its haplotype diversity and association with anaerobic germination tolerance in rice.	Front Plant Sci	14	1225445	2023		
53850	37507369	Wang D., Wang H., Xu X., Wang M., Wang Y., Chen H., Ping F., Zhong H., Mu Z., Xie W., Li X., Feng J., Zhang M., Fan Z., Yang T., Zhao J., Liu B., Ruan Y., Zhang G., Liu C., Liu Z.	Two complementary genes in a presence-absence variation contribute to indica-japonica reproductive isolation in rice.	Nat Commun	14(1)	4531	2023		
53851	37495715	Feng B., Xu Y., Fu W., Li H., Li G., Li J., Wang W., Tao L., Chen T., Fu G.	RGA1 Negatively Regulates Thermo-tolerance by Affecting Carbohydrate Metabolism and the Energy Supply in Rice.	Rice (N Y)	16(1)	32	2023		
53852	37480003	Liu K., Ma X., Zhao L., Lai X., Chen J., Lang X., Han Q., Wan X., Li C.	Comprehensive transcriptomic analysis of three varieties with different brown planthopper-resistance identifies leaf sheath lncRNAs in rice.	BMC Plant Biol.	23(1)	367	2023		
53853	37519936	Zhang J., Feng X., Jin J., Fang H.	Concise Cascade Methods for Transgenic Rice Seed Discrimination using Spectral Phenotyping.	Plant Phenomics	5	0071	2023		
53854	37540575	Liu J., Shi X., Zhong T., Jie W., Xu R., Ding Y., Ding C.	PINOID and&#xa0;PIN-FORMED Paralogous Genes Are Required for&#xa0;Leaf Morphogenesis in&#xa0;Rice.	Plant Cell Physiol.			2023		
53855	37569160	Koh Y.C., Liao H.J.	Effects of Debranching Conditions and Annealing Treatment on the Formation of Starch Nanoparticles and Their Physicochemical Characteristics.	Foods	12(15)		2023		
53856	37509868	Kobayashi K., Wang X., Wang W.	Genetically Modified Rice Is Associated with Hunger, Health, and Climate Resilience.	Foods	12(14)		2023		
53857	37514357	Feng F., Ma X., Yan M., Zhang H., Mei D., Fan P., Xu X., Wei C., Lou Q., Li T., Liu H., Luo L., Mei H.	Identification of Genetic Loci for Rice Seedling Mesocotyl Elongation in Both Natural and Artificial Segregating Populations.	Plants (Basel)	12(14)		2023		
53858	37521314	Zhao Z., Chen T., Yue J., Pu N., Liu J., Luo L., Huang M., Guo T., Xiao W.	<i>Small Auxin Up RNA 56 (SAUR56)</i> regulates heading date in rice.	Mol. Breed.	43(8)	62	2023		
53859	37628608	Han X., Wu Z., Liu F., Wang Y., Wei X., Tian P., Ling F.	Transcriptomic Analysis and salt-tolerance Gene Mining during Rice Germination.	Genes (Basel)	14(8)		2023		
53860	37511600	Monmai C., Kim J.S., Chin J.H., Lee S., Baek S.H.	Inhibitory Effects of Polyphenol- and Flavonoid-Enriched Rice Seed Extract on Melanogenesis in Melan-a Cells via MAPK Signaling-Mediated MITF Downregulation.	Int J Mol Sci	24(14)		2023		
53861	37523341	Yu L., Yao M., Mao L., Ma T., Nie Y., Ma H., Shao K., An H., Zhao J.	Rice DSP controls stigma, panicle and tiller primordium initiation.	Plant Biotechnol. J.			2023	LAX1,TAB1,NDL1,BIF2	lax, lax(lx), lx, OsbHLH123, bHLH123, OsLAX1, BOS1, OsBOS1,Os WUS, WUS, OsWOX1, WOX1, OsWUS, OsTAB, TAB1/WUS, MOC3, MOC3/OsWUS, SRT1, MOC3/TAB1/SRT1, DC1, OsDC1, DAP1, OsDAP1,ERF79, OsERF#079, OsERF079, OsERF79, AP2/EREBP#017, AP2/EREBP17, OsNDL1, DSP, OsDSP,bif2, Osbif2, OsBIF2, OsPID, PID, OsAGC25, AGC25
53862	37499659	Wang C., Wang J., Lu J., Xiong Y., Zhao Z., Yu X., Zheng X., Li J., Lin Q., Ren Y., Hu Y., He X., Li C., Zeng Y., Miao R., Guo M., Zhang B., Zhu Y., Zhang Y., Tang W., Wang Y., Hao B., Wang Q., Cheng S., He X., Yao B., Gao J., Zhu X., Yu H., Wang Y., Sun Y., Zhou C., Dong H., Ma X., Guo X., Liu X., Tian Y., Liu S., Wang C., Cheng Z., Jiang L., Zhou J., Guo H., Jiang L., Tao D., Chai J., Zhang W., Wang H., Wu C., Wan J.	A natural gene drive system confers reproductive isolation in rice.	Cell	186(17)	3577-3592.e18	2023	DUYAO,JIEYAO,COX11	OsDUYAO,OsJIEYAO,OsCOX11
53863	37570975	Park J.R., Kim E.G., Jang Y.H., Nam S.Y., Kim K.M.	Investigation of the Relationship between Genetic and Breeding Characteristics of WBPH Behavior according to Resistant Materials in Rice.	Plants (Basel)	12(15)		2023		
53864	37569437	Yan L., Luo T., Huang D., Wei M., Ma Z., Liu C., Qin Y., Zhou X., Lu Y., Li R., Qin G., Zhang Y.	Recent Advances in Molecular Mechanism and Breeding Utilization of Brown Planthopper Resistance Genes in Rice: An Integrated Review.	Int J Mol Sci	24(15)		2023		
53865	37446259	Shu Y., Zhang W., Tang L., Li Z., Liu X., Liu X., Liu W., Li G., Ying J., Huang J., Tong X., Hu H., Zhang J., Wang Y.	ABF1 Positively Regulates Rice Chilling Tolerance via Inducing Trehalose Biosynthesis.	Int J Mol Sci	24(13)		2023		
53866	37446265	Han Y., Yang J., Wu H., Liu F., Qin B., Li R.	Improving Rice Leaf Shape Using CRISPR/Cas9-Mediated Genome Editing of <i>SRL1</i> and Characterizing Its Regulatory Network Involved in leaf rolling through Transcriptome Analysis.	Int J Mol Sci	24(13)		2023		
53867	37447142	Danpreedanan N., Yamuangmorn S., Jamjod S., Prom-U-Thai C., Pusadee T.	Genotypic Variation of Purple Rice in Response to Shading in Yield, anthocyanin content, and Gene Expression.	Plants (Basel)	12(13)		2023		
53868	37409401	Xu Z.	A Specific Protective Mechanism Against Chloroplast Photo-Reactive Oxygen Species in Phosphate-Starved Rice Plants.	Adv Biol (Weinh)		e2300106	2023	GLK1,PSAG,GLK2,PSAE,GAPC2,GAPC1,GAPC,DGP1C,DGP1B,DGP1,PSBR3,PSBW	OsGLK1, OsGlk1, GLK1,PsaG, OsPSAG,OsGLK2, OsGlk2,PsaE, OsPsaE,GAPDH, OsGAPDH, OsGapC2,OsGapC1, OsGapC3,OsGapC3, OGapC3, OsGAPDH1, GAPDH1, OsGapC1,OsDGP1C,OsDGP1B,OsDGP1,OsPsbR3, PsbR3,PsbW, OsPSBW
53869	37448066	Rehman T.H., Lundy M.E., Reis A.F.B., Akbar N., Linquist B.A.	Reflectance Measurements from Aerial and Proximal Sensors Provide Similar Precision in Predicting the Rice Yield Response to Mid-Season N Applications.	Sensors (Basel)	23(13)		2023		
53870	37430391	Zhang F., Shi W., Zhou Y., Ma L., Miao Y., Mu N., Ren H., Cheng Z.	RAD51C-RAD51D interplays with MSH5 and regulates crossover maturation in rice meiosis.	New Phytol.	239(5)	1790-1803	2023		
53871	37444339	Li Y., Liang C., Liu J., Zhou C., Wu Z., Guo S., Liu J., A N., Wang S., Xin G., Henry R.J.	Moderate Reduction in Nitrogen Fertilizer Results in Improved Rice Quality by Affecting Starch Properties without Causing Yield Loss.	Foods	12(13)		2023		
53872	37447115	Zhu N., Wei X., Yu J., Zhang S., Hu D., Li P., Xia Y., Song K.	Interference Effects of Commercial Persistent Luminescence Materials on Rice Germination and Seedling Growth.	Plants (Basel)	12(13)		2023		
53873	37404045	Wang K., Fu S., Wu L., Wu J., Wang Y., Xu Y., Zhou X.	Rice stripe virus nonstructural protein 3 suppresses plant defence responses mediated by the MEL-SHMT1 module.	Mol. Plant Pathol.	24(11)	1359-1369	2023		
53874	37649880	Bansal S., Sundararajan S., Shekhawat P.K., Singh S., Soni P., Tripathy M.K., Ram H.	Rice lipases: a conundrum in rice bran stabilization: a review on their impact and biotechnological interventions.	Physiol Mol Biol Plants	29(7)	985-1003	2023		
53875	37394308	Cui X., Dard A., Reichheld J.P., Zhou D.X.	Multifaceted functions of histone deacetylases in stress response.	Trends Plant Sci.	28(11)	1245-1256	2023		
53876	37410917	Xu J., Zhu C., Su M., Li S., Chao H., Chen M.	CropGF: a comprehensive visual platform for&#xa0;crop gene family mining and&#xa0;analysis.	Database (Oxford)	2023		2023		
53877	37504712	Robinson K.A., St-Jacques AD., Shields S.W., Sproule A., Demissie Z.A., Overy D.P., Loewen M.C.	Multiple <i>Clonostachys rosea</i> UDP-Glycosyltransferases Contribute to the Production of 15-Acetyl-Deoxynivalenol-3-O-Glycoside When Confronted with <i>Fusarium graminearum</i>.	J Fungi (Basel)	9(7)		2023		
53878	37520368	Islam T., Fatema, Hoque M.N., Gupta D.R., Mahmud N.U., Sakif T.I., Sharpe A.G.	Improvement of growth, yield and associated bacteriome of rice by the application of probiotic <i>Paraburkholderia</i> and <i>Delftia</i>.	Front Microbiol	14	1212505	2023		
53879	37511217	Yang L., Li P., Wang J., Liu H., Zheng H., Xin W., Zou D.	Fine Mapping and Candidate Gene Analysis of Rice Grain Length QTL <i>qGL9.1</i>.	Int J Mol Sci	24(14)		2023	F3'H6	OsF3'H6, OsF3'H7, F3'H6, CYP92A8, OsCYP92A8, OsCYP71W7, CYP71W7
53880	37511436	Tiwari S., Jain M., Singla-Pareek SL., Bhalla P.L., Singh M.B., Pareek A.	Pokkali: A Naturally Evolved Salt-Tolerant Rice Shows a Distinguished Set of lncRNAs Possibly Contributing to the Tolerant Phenotype.	Int J Mol Sci	24(14)		2023		
53881	37511093	Ren M., Liu S., Tang C., Mao G., Gai P., Guo X., Zheng H., Tang Q.	Photomorphogenesis and Photosynthetic Traits Changes in Rice Seedlings Responding to Red and Blue Light.	Int J Mol Sci	24(14)		2023		
53882	37452482	Zou J., Jiang C., Qiu S., Duan G., Wang G., Li D., Yu S., Zhao D., Sun W.	An Ustilaginoidea virens glycoside hydrolase 42 protein is an essential virulence factor and elicits plant immunity as a PAMP.	Mol. Plant Pathol.	24(11)	1414-1429	2023		
53883	37450076	Rehman O.U., Uzair M., Farooq M.S., Saleem B., Attacha S., Attia K.A., Farooq U., Fiaz S., El-Kallawy WH., Kimiko I., Khan M.R.	Comprehensive insights into the regulatory mechanisms of lncRNA in alkaline-salt stress tolerance in rice.	Mol. Biol. Rep.	50(9)	7381-7392	2023		
53884	37467142	Castanera R., Morales-D&#xed;az N., Gupta S., Purugganan M., Casacuberta J.M.	Transposons are important contributors to gene expression variability under selection in rice populations.	Elife	12		2023		
53885	37511542	Ran C., Zhang Y., Chang F., Yang X., Liu Y., Wang Q., Zhu W.	Genome-Wide Analyses of <i>SlFWL</i> Family Genes and Their Expression Profiles under Cold, Heat, Salt and Drought Stress in Tomato.	Int J Mol Sci	24(14)		2023	PCR3,FWL3,FWL7,FWL6,FWL4,DMT1,PCR1,PCR2,TGW2,FWL4,FWL2	OsPCR3,OsFWL3, OsFWL2/OsPCR5, OsFWL2, OsPCR5, FWL2, PCR5,OsFWL7, PGPS/D12, PGPS, D12, OsFWL6, FWL6,OsFWL6, OsCNR10, CNR10, OsFWL5/OsPCR1, OsFWL5, OsPCR1, FWL5, PCR1 ,OsFWL4, OsFWL8, FWL8,OsMCA1, MCA1, OsDMT1, OsDMT1/OsMCA1,OsFWL5, FWL5, OsPcr1, OsPCR1, OsFWL5/OsPCR1, OsFWL7, FWL7,OsPCR2,OsFWL1, FWL1, OsTGW2, OsCNR1, CNR1, OsPCR3, PCR3, OsFWL3, FWL3,OsFWL, FWL, OsFWL4/OsPCR6, OsFWL4, OsPCR6, PCR6,OsFWL2, OsPCR1, PCR1, OsFWL1, FWL1
53886	37570985	Shim K.C., Kang Y., Song J.H., Kim Y.J., Kim J.K., Kim C., Tai T.H., Park I., Ahn S.N.	A Frameshift Mutation in the Mg-chelatase I Subunit Gene <i>OsCHLI</i> Is Associated with a Lethal Chlorophyll-Deficient, Yellow Seedling Phenotype in Rice.	Plants (Basel)	12(15)		2023		
53887	37528583	Wu X., Ren B., Liu L., Qiu S., Li X., Li P., Yan F., Lin H., Zhou X., Zhang D., Zhou H.	Adenine base editor incorporating the N-methylpurine DNA glycosylase MPGv3 enables efficient A-to-K base editing in rice.	Plant Commun		100668	2023		
53888	37570941	Kunnam J., Pinta W., Ruttanaprasert R., Bunphan D., Thabthimtho T., Aninbon C.	Stability of Phenols, Antioxidant Capacity and grain yield of Six Rice Genotypes.	Plants (Basel)	12(15)		2023		
53889	37504759	Bakhat N., Vielba-Fern&#xe1;ndez A., Padilla-Roji I., Mart&#xed;nez-Cruz J., Polonio &#xc1;., Fern&#xe1;ndez-Ortu&#xf1;o D., P&#xe9;rez-Garc&#xed;a A.	Suppression of Chitin-Triggered Immunity by Plant Fungal Pathogens: A Case Study of the Cucurbit Powdery Mildew Fungus <i>Podosphaera xanthii</i>.	J Fungi (Basel)	9(7)		2023		
53890	37499938	Pang R., Li S., Chen W., Yuan L., Xiao H., Xing K., Li Y., Zhang Z., He X., Zhang W.	Insecticide resistance reduces the profitability of insect-resistant rice cultivars.	Journal of Advanced Research			2023		
53891	37408013	Billakurthi K., Hibberd J.M.	A rapid and robust leaf ablation method to visualize bundle sheath cells and chloroplasts in C3 and C4 grasses.	Plant Methods	19(1)	69	2023		
53892	37446297	Xu J., You X., Leng Y., Li Y., Lu Z., Huang Y., Chen M., Zhang J., Song T., Liu T.	Identification and Alternative Splicing Profile of the <i>Raffinose synthase</i> Gene in Grass Species.	Int J Mol Sci	24(13)		2023	RS3,_,AGA1,AGA3,RS5,RS2	Rafs, OsRS3,Rafs, OsRS2, RS2,Osh69, h69, OsAGA1, OsRS6, RS6,OsAGA3, OsRS4, RS4,OsRS5, OsRS1, RS1,OsRS2, OsRS5, RS5
53893	37569770	Wang S., Wu H., Lu Z., Liu W., Wang X., Fang Z., He X.	Combining Ability Analysis of Yield-Related Traits of Two Elite Rice Restorer Lines in Chinese Hybrid Rice.	Int J Mol Sci	24(15)		2023		
53894	37535257	Song X., Qiao Y., Ma J., Zhang X., Liu J., Xin W., Xing S., Wang Y.	Co-expression of four penaeidins in transgenic rice seeds: an alternative strategy for substitute antibiotic agricultural products.	Transgenic Res.			2023		
53895	37560017	Lin Y., Ye C., Li X., Chen Q., Wu Y., Zhang F., Pan R., Zhang S., Chen S., Wang X., Cao S., Wang Y., Yue Y., Liu Y., Yue J.	quarTeT: a telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification.	Hortic Res	10(8)	uhad127	2023		
53896	37628740	Feng Y., Yang S., Li W., Mao J., Chen B., Ma Z.	Genome-Wide Identification and Expression Analysis of ANS Family in Strawberry Fruits at Different Coloring Stages.	Int J Mol Sci	24(16)		2023		
53897	37545368	Ji D., Luo M., Guo Y., Li Q., Kong L., Ge H., Wang Q., Song Q., Zeng X., Ma J., Wang Y., Meurer J., Chi W.	Efficient scavenging of reactive carbonyl species in chloroplasts is required for light acclimation and fitness of plants.	New Phytol.	240(2)	676-693	2023	HLT1	OsHLT1
53898	37609038	Sethi M., Saini D.K., Devi V., Kaur C., Singh M.P., Singh J., Pruthi G., Kaur A., Singh A., Chaudhary D.P.	Unravelling the genetic framework associated with grain quality and yield-related traits in maize (<i>Zea mays</i> L.).	Front Genet	14	1248697	2023		
53899	37569762	Wang J., Hu K., Wang J., Gong Z., Li S., Deng X., Li Y.	Integrated Transcriptomic and Metabolomic Analyses Uncover the Differential Mechanism in Saline-Alkaline Tolerance between <i>Indica</i> and <i>Japonica</i> Rice at the Seedling Stage.	Int J Mol Sci	24(15)		2023		
53900	37539491	Zhang W., Wang H., Ma Y., Gao B., Guan P., Huang X., Ouyang W., Guo M., Chen G., Li G., Li X.	Domains Rearranged Methylase 2 maintains DNA methylation at large DNA hypomethylated shores and long-range chromatin interactions in rice.	Plant Biotechnol. J.			2023		
53901	37542048	Huang Y.H., Han J.Q., Ma B., Cao W.Q., Li X.K., Xiong Q., Zhao H., Zhao R., Zhang X., Zhou Y., Wei W., Tao J.J., Zhang W.K., Qian W., Chen S.Y., Yang C., Yin C.C., Zhang J.S.	A translational regulator MHZ9 modulates ethylene signaling in rice.	Nat Commun	14(1)	4674	2023	ERS2,DCP2,EIN5,FBOX316,FBOX72,EIL2,MHZ9,EIN2,EIL1	OS-ERS2, OsERS2, OsERS2a, OsERS2b, OsERS2c,OsDCP2, NUDX16, OsNUDX16,OsXrn4, Xrn4, OsEIN5,OsFbox316, Fbox316, Os_F0624, OsEBF1, EBF1,  OsFBL30, FBL30,OsFbox072, OsFbox72, Fbox72, Os_F0508, OsEBF2, EBF2,  OsFBL7, FBL7,OsEIL2,OsMHZ9,OsEIN2, MHZ7/OsEIN2, OsEIN2/MHZ7, MHZ7 ,OsEIL1, EIN3, OsEIN3, MHZ6, OsEIL1a, EIL1a, OsEIL1b, EIL1b
53902	37626960	Yan Q., Tong J., Li S., Peng Q.	Barnyard Grass Stress Triggers Changes in Root Traits and Phytohormone Levels in Allelopathic and Non-Allelopathic Rice.	Biology (Basel)	12(8)		2023		
53903	37636944	Khepar V., Ahuja R., Sidhu A., Samota M.K.	Nano-sulfides of Fe and Mn Efficiently Augmented the Growth, Antioxidant Defense System, and Metal Assimilation in Rice Seedlings.	ACS Omega	8(33)	30231-30238	2023		
53904	37571004	Osakina A., Jia Y.	Genetic Diversity of Weedy Rice and Its Potential Application as a Novel Source of disease resistance.	Plants (Basel)	12(15)		2023		
53905	37404364	Sodhi G.K., Saxena S.	Promising drought and salinity tolerance features of <i>Nigrospora</i> species existing as endophytes in <i>Oryza sativa</i>.	3 Biotech	13(8)	262	2023		
53906	37529085	Rakotoson T., Senthilkumar K., Johnson J.M., Ibrahim A., Kihara J., Sila A., Saito K.	Estimating nutrient concentrations and uptake in rice grain in sub-Saharan Africa using linear mixed-effects regression.	Field Crops Res.	299	108987	2023		
53907	37526652	Burr C.A., Sun J., Yamburenko M.V., Willoughby A., Hodgens C., Boeshore S.L., Elmore A., Atkinson J., Nimchuk Z.L., Bishopp A., Schaller G.E., Kieber J.J.	Correction: The HK5 and HK6 cytokinin receptors mediate diverse developmental pathways in rice.	Development	150(15)		2023		
53908	37533135	Yu Y., Hu H., Voytas D.F., Doust A.N., Kellogg E.A.	The YABBY gene SHATTERING1 controls activation rather than patterning of the abscission zone in Setaria viridis.	New Phytol.	240(2)	846-862	2023		
53909	37572965	Sharifsadat S.Z., Aghdasi M., Ghanati F., Arzanesh M.H.	Harmonized biochemical modification of cell walls to get permission for entrance of Azospirillum sp. to rice roots.	Plant Sci.	335	111823	2023		
53910	37555917	Phan N.T.H., Van Pham C., Tang H.T., Van Nguyen L., Nguyen L.V., Bertin P.	Integration of genome-wide association studies reveal loci associated with salt tolerance score of rice at the seedling stage.	J. Appl. Genet.			2023		
53911	37636117	Wu Y., Zha W., Qiu D., Guo J., Liu G., Li C., Wu B., Li S., Chen J., Hu L., Shi S., Zhou L., Zhang Z., Du B., You A.	Comprehensive identification and characterization of lncRNAs and circRNAs reveal potential brown planthopper-responsive ceRNA networks in rice.	Front Plant Sci	14	1242089	2023	MIR530,XLOC_028297,MIR1846C,XLOC_042442	miR530, Osa-miR530, OsmiR530, osa-MIR530, osa-miR530 osa-miR530-3p, osa-miR530-5p,,miR1846c, osa-miR1846c, osa-MIR1846c,
53912	37569220	Summpunn P., Deh-Ae N., Panpipat W., Manurakchinakorn S., Bhoopong P., Donlao N., Rawdkuen S., Shetty K., Chaijan M.	Nutritional Profiles of <i>Yoom Noon</i> Rice from Royal Initiative of Southern Thailand: A Comparison of White Rice, Brown Rice, and Germinated Brown Rice.	Foods	12(15)		2023		
53913	37532308	Jin S.B., Jang S.W., Shin J.A., Jung N.H., Kim H.A., Park S.Y., Lee W.C., Kong K.H.	Functional significance of serine 13 in the active site of glutathione S-transferase F3 from Oryza sativa.	Pestic Biochem Physiol	194	105463	2023		
53914	37599176	Qu L., Liu M., Zheng L., Wang X., Xue H.	Data-independent acquisition-based global phosphoproteomics reveal the diverse roles of casein kinase 1 in plant development.	Science Bulletin	68(18)	2077-2093	2023		
53915	37032032	Yue E., Rong F., Liu Z., Ruan S., Lu T., Qian H.	Cadmium induced a non-coding RNA microRNA535 mediates Cd accumulation in rice.	J Environ Sci (China)	130	149-162	2023		
53916	37539937	Li M., Feng Y., Han Q., Yang Y., Shi Y., Zheng D., Zhang W.	Genomic variations combined with epigenetic modifications rewire open chromatin in rice.	Plant Physiol.			2023		
53917	37540764	Bao Y., Xu Y., Jia F., Li M., Xu R., Zhang F., Guo J.	Allosteric inhibition of myosin by phenamacril: a synergistic mechanism revealed by computational and experimental approaches.	Pest Manag. Sci.			2023		
53918	37655220	Abdallah Y., Nehela Y., Ogunyemi S.O., Ijaz M., Ahmed T., Elashmony R., Alkhalifah D.H.M., Hozzein W.N., Xu L., Yan C., Chen J., Li B.	Bio-functionalized nickel-silica nanoparticles suppress bacterial leaf blight disease in rice (<i>Oryza sativa</i> L.).	Front Plant Sci	14	1216782	2023		
53919	37628644	Yoon D.K., Choi I., Won Y.J., Shin Y., Cheon K.S., Oh H., Lee C., Lee S., Cho M.H., Jun S., Kim Y., Kim S.L., Baek J., Jeong H., Lyu J.I., Lee G.S., Kim K.H., Ji H.	QTL Mapping of tiller number in Korean <i>Japonica</i> Rice Varieties.	Genes (Basel)	14(8)		2023		
53920	37631220	Sun A.Z., Chen J.H., Jin X.Q., Li H., Guo F.Q.	Supplementing the Nuclear-Encoded PSII Subunit D1 Induces Dramatic Metabolic Reprogramming in Flag Leaves during Grain Filling in Rice.	Plants (Basel)	12(16)		2023		
53921	37711698	Nawaz A., Qamar Z.U., Marghoob M.U., Imtiaz M., Imran A., Mubeen F.	Contribution of potassium solubilizing bacteria in improved potassium assimilation and cytosolic K+/Na+ ratio in rice (<i>Oryza sativa</i> L.) under saline-sodic conditions.	Front Microbiol	14	1196024	2023		
53922	37399171	Premachandran Y.	Two in one: Splice isoforms of a HY5-homolog in rice regulate plant height in light and darkness.	Plant Physiol.	193(1)	169-171	2023		
53923	37621089	Wang J., Huang J., Bao J., Li X., Zhu L., Jin J.	Rice domestication-associated transcription factor PROSTRATE GROWTH 1 controls plant and panicle architecture by regulating the expression of LAZY 1 and OsGIGANTEA, respectively.	Mol Plant	16(9)	1413-1426	2023		
53924	37687373	Guo D., Chen L., Liu S., Jiang W., Ye Q., Wu Z., Wang X., Hu X., Zhang Z., He H., Hu L.	<i>Curling Leaf 1</i>, Encoding a MYB-Domain Protein, Regulates Leaf Morphology and Affects Plant Yield in Rice.	Plants (Basel)	12(17)		2023	BAMY2,RSUS1,TID1,PSAF,PSBP,PHO1,MFS1,PC,BE1,RL9,PHS8	OsBamy2, Bamy2, OsBmy3, Bmy3, OsBMY4, BMY4,sus1, RSus1(t), SUS1, SS2, OsScS2, RSs2, RSus1, SuSy1, OsSUS1, RSS2, RSus2, OsRSUS1,OsTID1, TubA2, SRS5, OS-TubA2, OsTubA2, OsSRS5, ,Usaf, OsPS1-F, PS1-F, OsPS1, PS1,PsbP, OsPsbP, psbP,Pho1, OsPho1, OsPHOL, PHOL, OsPHOI, PHOI,ERF130, OsERF#130, OsERF130, AP2/EREBP#165, AP2/EREBP165, DLN151, OsDLN151,OsPC, PetE, OsPETE, OsCPL1, CPL1,OsBE1,rl9, SLL1/RL9, SLL1, OsSLL1, OsADD1, ADD1, KANADI1, AH2, OsAH2, CL1, OsCL1,ISA1, OsISA1, ISA, OsISA, PHS8/ISA1, OsPHS8, ISA I, OsISA I, ISAI, OsISAI
53925	37623700	Zhang Y., Zhang S., Zhang J., Wei W., Zhu T., Qu H., Liu Y., Xu G.	Improving rice eating and cooking quality by enhancing endogenous expression of a nitrogen-dependent floral regulator.	Plant Biotechnol. J.			2023		
53926	37649077	Jia Q., Zhang X., Liu Q., Li J., Wang W., Ma X., Zhu B., Li S., Gong S., Tian J., Yuan M., Zhao Y., Zhou D.X.	A DNA adenine demethylase impairs PRC2-mediated repression of genes marked by a specific chromatin signature.	Genome Biol.	24(1)	198	2023	ALKBH1,WRKY71,2R_MYB36 ,CYP94C2B,ALKBH5,WRKY53,EMF2B,CDPK4,ALKBH8A,NAC3,ALKBH1A,ALKBH2,ALKBH8B,ALKBH10,ZFP182	OsALKBH1,OsWRKY71, WRKY-71,OsMYB2, MYB2, Os2R_MYB36 ,OsCYP94C2b,OsALKBH5, OsALKBH9A, ALKBH9A, OsALKBH9, ALKBH9,OsWRKY53, WRKY-53,OsEMF2b, EMF2b, GW9, OsGW9, GW9/OsEMF2b ,OsCDPK4, OsCPK4, CPK4, CDPK1,OsALKBH8A,OsNAC3, NAC67, ONAC067, OnNAC3*, OsNAC3/ONAC067, DLN180, OsDLN180,OsALKBH1A, OsALKBH9B, ALKBH9B,OsALKBH2,OsALKBH8B,OsALKBH10, OsALKBH9C, ALKBH9C,OsZFP182,  ZOS3-21, OsZOS3-21, ZOS3, OsZOS3
53927	37640933	Xie Z., Zhao S., Li Y., Deng Y., Shi Y., Chen X., Li Y., Li H., Chen C., Wang X., Liu E., Tu Y., Shi P., Tong J., Gutierrez-Beltran E., Li J., Bozhkov P.V., Qian W., Zhou M., Wang W.	Phenolic acid-induced phase separation and translation inhibition mediate plant interspecific competition.	Nat Plants	9(9)	1481-1499	2023		
53928	37632767	Li Y., Zhou Y., Wang B., Mu N., Miao Y., Tang D., Shen Y., Cheng Z.	FANCM interacts with the MHF1-MHF2 complex to limit crossover frequency during rice meiosis.	Plant J.			2023	FANCM	OsFANCM
53929	37701802	Shao A., Fan S., Xu X., Wang W., Fu J.	Identification and evolution analysis of <i>YUCCA</i> genes of <i>Medicago sativa</i> and <i>Medicago truncatula</i> and their expression profiles under abiotic stress.	Front Plant Sci	14	1268027	2023		
53930	37602953	Liao Z., Zhang Y., Yu Q., Fang W., Chen M., Li T., Liu Y., Liu Z., Chen L., Yu S., Xia H., Xue H.W., Yu H., Luo L.	Coordination of growth and drought responses by GA-ABA signaling in rice.	New Phytol.	240(3)	1149-1161	2023		
53931	37692421	Sheela H.S., Vennapusa A.R., Melmaiee K., Prasad T.G., Reddy C.P.	Pyramiding of transcription factor, <i>PgHSF4</i>, and stress-responsive genes of <i>p68</i>, <i>Pg47</i>, and <i>PsAKR1</i> impart multiple abiotic stress tolerance in rice (<i>Oryza sativa L.</i>).	Front Plant Sci	14	1233248	2023		
53932	37676342	Luo Z., Liu C.L., Yang X., Zhu J.K., Huang C.F.	Mitigating cadmium accumulation in rice without compromising growth via modifying the regulatory region of OsNRAMP5.	Stress Biol	3(1)	34	2023		
53933	37605164	Ghazy M.I., Hamad H.S., Gewaily E.E., Bleih E.M., Arafat E.F.A., El-Kallawy WH., El-Naem SA., Rehan M., Alwutayd K.M., Abd El Moneim D.	Impacts of kinetin implementation on leaves, floral and root-related traits during seed production in hybrid rice under water deficiency.	BMC Plant Biol.	23(1)	398	2023		
53934	37692442	Anjum M., Prakash N.B.	Production of phytolith and PhytOC and distribution of extractable Si Pools in aerobic rice as influenced by different Si sources.	Front Plant Sci	14	1146416	2023		
53935	37761813	Al-Bader N., Meier A., Geniza M., Gongora Y.S., Oard J., Jaiswal P.	Loss of a Premature Stop Codon in the Rice Wall-Associated Kinase 91 (<i>WAK91</i>) Gene Is a Candidate for Improving Leaf Sheath Blight disease resistance.	Genes (Basel)	14(9)		2023		
53936	37610886	Chang J.D., Huang S., Wiseno I., Sui F.Q., Feng F., Zheng L., Feng Ma J., Zhao F.J.	Dissecting the promotional effect of zinc on cadmium translocation from roots to shoots in rice.	J. Exp. Bot.			2023		
53937	37653366	Jin Y., Luo J., Yang Y., Jia J., Sun M., Wang X., Khan I., Huang D., Huang L.	The evolution and expansion of RWP-RK gene family improve the heat adaptability of elephant grass (Pennisetum purpureum Schum.).	BMC Genomics	24(1)	510	2023		
53938	37687363	Mayakaduwa R., Silva T.	Haploid Induction in <i>Indica</i> Rice: Exploring New Opportunities.	Plants (Basel)	12(17)		2023		
53939	37649829	Yang K., Liu H., Jiang W., Hu Y., Zhou Z., An X., Miao S., Qin Y., Du B., Zhu L., He G., Chen R.	Large scale rice germplasm screening for identification of novel brown planthopper resistance sources.	Mol. Breed.	43(9)	70	2023		
53940	37649592	Mohamadi S.F., Babaeian Jelodar N., Bagheri N., Nematzadeh G., Hashemipetroudi S.H.	New insights into comprehensive analysis of magnesium transporter (<i>MGT</i>) gene family in rice (<i>Oryza sativa</i> L.).	3 Biotech	13(10)	322	2023		
53941	37659631	Wang H., Li Z., Shen L., Zhang P., Lin Y., Huang X., Du S., Liu H.	Ketoprofen exposure perturbs nitrogen assimilation and ATP synthesis in rice roots: An integrated metabolome and microbiome analysis.	Environ. Pollut.	336	122485	2023		
53942	37687331	Hu X., Liu R., Mao H., Xu Y., Chen B., Li Y., Yang X.	Inter-Species Investigation of Biological Traits among Eight <i>Echinochloa</i> Species.	Plants (Basel)	12(17)		2023		
53943	37692438	Sinha P., Kumar T D., Sk H., Solanki M., Gokulan C.G., Das A., Miriyala A., Gonuguntala R., Elumalai P., M B V N K., S K M., Kumboju C., Arra Y., G S L., Chirravuri N.N., Patel H.K., Ghazi I.A., Kim S.R., Jena K.K., Hanumanth S.R., Oliva R., Mangrauthia S.K., Sundaram R.M.	Fine mapping and sequence analysis reveal a promising candidate gene encoding a novel NB-ARC domain derived from wild rice (<i>Oryza officinalis</i>) that confers bacterial blight resistance.	Front Plant Sci	14	1173063	2023	XA48	Xa48t, OsXa48, Xa48(t)
53944	37611832	Gonz&#xe1;lez-Torralva F., Norsworthy J.K.	Quizalofop resistance in weedy rice (Oryza sativa L.) is mainly conferred by an Ile1781Leu mutation.	Plant Sci.	336	111838	2023		
53945	37727858	Li P., Li Z., Liu X., Zhang H., Zhang S., Liu F., Li N., Yang Y., Xie K., Ding H., Yao F.	Haplotype analysis and marker development of five salt-tolerant-related genes in rice (<i>Oryza sativa</i> L.).	Front Plant Sci	14	1259462	2023		
53946	37631223	Varanasi Y.V.P., Isetty S.R., Revadi P., Balakrishnan D., Hajira S., Prasad M.S., Laha G.S., Perraju P., Singh U.M., Singh V.K., Kumar A., Sundaram R.M., Badri J.	Molecular and Morphological Characterization of Introgression Lines with Resistance to Bacterial Leaf Blight and Blast in Rice.	Plants (Basel)	12(16)		2023		
53947	37620521	Akhtar M., Nosheen A., Keyani R., Yasmin H., Naz R., Mumtaz S., Hassan M.N.	Biocontrol of Rhizoctonia solani in basmati rice by the application of Lactobacillus and Weissella spp.	Sci Rep	13(1)	13855	2023		
53948	37628672	Li W.Q., Zheng W.J., Peng Y., Shao Y., Liu C.T., Li J., Hu Y.Y., Zhao B.R., Mao B.G.	<i>OsPMS1</i> Mutation Enhances salt tolerance by Suppressing ROS Accumulation, Maintaining Na+/K+ Homeostasis, and Promoting ABA Biosynthesis.	Genes (Basel)	14(8)		2023		
53949	37597275	Zhao Y., Zhang C., Zhao Y., Peng Y., Ran X., Guo H., Shen Y., Liu W., Ding Y., Tang S.	Multiple regulators were involved in glutelin synthesis and subunit accumulation in response to temperature and nitrogen during rice grain-filling stage.	Plant Physiol. Biochem.	202	107967	2023		
53950	37627613	Nguyen A.T., Tran L.H., Jung S.	Salt Stress-Induced Modulation of Porphyrin Biosynthesis, Photoprotection, and Antioxidant Properties in Rice Plants (<i>Oryza sativa</i>).	Antioxidants (Basel)	12(8)		2023		
53951	37662843	Loreti E., Perata P.	ERFVII transcription factors and their role in the adaptation to hypoxia in Arabidopsis and crops.	Front Genet	14	1213839	2023	SUB1B,SUB1C,SNK2,SNK1,SUB1A	Sub1B, OsSUB1B, OsERF#063, OsERF063, ERF063, OsERF63, ERF63, AP2/EREBP#166, AP2/EREBP166,Sub1C, OsSUB1C, OsERF#073, OsERF073, ERF073, OsERF73, ERF73, AP2/EREBP#122, AP2/EREBP122, SUB1B,SK2, OsSK2, OsSNK2,SK1, OsSK1, OsSNK1, SK1C9285,Sub1A, Sub1A-1, Sub1A-2, OsSUB1A
53952	37628859	Jiang R., Zhou S., Da X., Yan P., Wang K., Xu J., Mo X.	OsMKK6 Regulates Disease Resistance in Rice.	Int J Mol Sci	24(16)		2023		
53953	37645459	Susmitha P., Kumar P., Yadav P., Sahoo S., Kaur G., Pandey M.K., Singh V., Tseng T.M., Gangurde S.S.	Genome-wide association study as a powerful tool for dissecting competitive traits in legumes.	Front Plant Sci	14	1123631	2023		
53954	37623248	Rout P., Ravindranath N., Gaikwad D., Nanda S.	Unveiling <i>Nilaparvata lugens</i> St&#xe5;l Genes Defining Compatible and Incompatible Interactions with Rice through Transcriptome Analysis and Gene Silencing.	Curr Issues Mol Biol	45(8)	6790-6803	2023		
53955	37631170	Jiang X., Hong W.J., Lee S.K., Jung K.H.	Genome-Wide Identification and Analysis of Collar Region-Preferential Genes in Rice.	Plants (Basel)	12(16)		2023	WRKY104,TPS37,DOF29,BZIP78,NAC55,BHLH083,CRPG160,MYB45,CRPG348,CRPG33,LG1,CRPG70	OsWRKY104, CRPG32, OsCRPG32,OsTPS37, CRPG15, OsCRPG15,OsDof29, Dof29, OsDof-29, OsDof20, Dof20, CRPG562, OsCRPG562,OsbZIP78, CRPG135, OsCRPG135,ONAC055, ONAC55, CRPG64, OsCRPG64,OsbHLH083, bHLH083, CRPG311, OsCRPG311,OsCRPG160,OsMPH1, MPH1, OsMYB45, DLN171, OsDLN171, OsMYB-R1, MYB-R1, CRPG17, OsCRPG17,OsCRPG348,OsCRPG33,SPL8, OsSPL8, OsLG1,OsCRPG70
53956	37629128	Do V.G., Lee Y., Kim J.H., Kwon Y.S., Park J.T., Yang S., Park J., Win N.M., Kim S.	The Synergistic Effects of Environmental and Genetic Factors on the Regulation of Anthocyanin Accumulation in Plant Tissues.	Int J Mol Sci	24(16)		2023		
53957	37629121	Jia L., Hu D., Wang J., Liang Y., Li F., Wang Y., Han Y.	Genome-Wide Identification and Functional Analysis of Nitrate Transporter Genes (<i>NPF</i>, <i>NRT2</i> and <i>NRT3</i>) in Maize.	Int J Mol Sci	24(16)		2023		
53958	37596786	Wang Y., Lv Y., Yu H., Hu P., Wen Y., Wang J., Tan Y., Wu H., Zhu L., Wu K., Chai B., Liu J., Zeng D., Zhang G., Zhu L., Gao Z., Dong G., Ren D., Shen L., Zhang Q., Li Q., Guo L., Xiong G., Qian Q., Hu J.	GR5 acts in the G protein pathway to regulate grain size in rice.	Plant Commun		100673	2023	EP2,GGC2,RGG1,DRW1,CYCD5;1,DEP3,LK3,DEP1,RGG2,NGR5	ep2, EP2/DEP2/SRS1, SRS1/DEP2, DEP2, SRS1, OsSRS1, CL7(t), OsRELA, RELA,OsGGC2,OsRGG1,OsWD40-166, WD40-166, OsDRW1,  OsDWD47, DWD47,CycD5;1, CycD5;os;1, Orysa;CycD5;1, Orysa;CYCD5;1, OsCYCD5;2, CycD5;2,dep3, OspPLAIIIdelta, pPLAIIIdelta,lk3(t), lk3(t)*, SG3, GS3, SG3-GS3, OsGW3, OsGS3, RGG3/GS3/Mi/OsGGC1, RGG3, Mi, OsGGC1, GGC1, OsSYL3, SYL3, TT2, OsTT2,OsDEP1, EP, qPE9-1, DN1, DEP1/DN1/qPE9-1, qNGR9, qDEP1, RGG4/DEP1/DN1/qPE9-1/OsGGC3, RGG4, OsDN1, OsGGC3, GGC3,OsRGG2,ERF142, OsERF#142, OsERF142, AP2/EREBP#049, AP2/EREBP49, SMOS1, OsSMOS1, SHB, OsAP2-EREBP-049, RLA1, RLA1/SMOS1, OsERF142/SMOS1, OsNGR5, GR5, OsGR5
53959	37628107	Yu J., Zhu D., Zheng X., Shao L., Fang C., Yan Q., Zhang L., Qin Y., Shao Y.	The Effects of Genotype &#xd7; Environment on Physicochemical and Sensory Properties and Differences of Volatile Organic Compounds of Three Rice Types (<i>Oryza sativa</i> L.).	Foods	12(16)		2023		
53960	37596537	Saleem A., Zulfiqar A., Saleem M.Z., Ali B., Saleem M.H., Ali S., Tufekci E.D., Tufekci A.R., Rahimi M., Mostafa R.M.	Alkaline and acidic soil constraints on iron accumulation by Rice cultivars in relation to several physio-biochemical parameters.	BMC Plant Biol.	23(1)	397	2023		
53961	37599294	Wang R., Mi K., Yuan X., Chen J., Pu J., Shi X., Yang Y., Zhang H., Zhang H.	Zinc Oxide Nanoparticles Foliar Application Effectively Enhanced Zinc and Aroma Content in Rice (Oryza sativa L.) Grains.	Rice (N Y)	16(1)	36	2023		
53962	37604389	Zhu W., Lu S., Jiang H., Wang P., He C., Bian H., Wang J.	Interactions between phenanthrene and polystyrene micro/nano plastics: Implications for rice (Oryza sativa L.) toxicity.	Environ. Pollut.	337	122360	2023		
53963	37598889	Li J., Liu Y., Kong L., Xu E., Zou Y., Zhang P., Zhang W., Chen X.	An intracellular transporter OsNRAMP7 is required for distribution and accumulation of iron into rice grains.	Plant Sci.	336	111831	2023		
53964	37631212	Tan M., Chen R., Chen X., Shahid M.Q., Liu X., Wu J.	In Vitro Induction of Interspecific Hybrid and Polyploidy Derived from <i>Oryza officinalis</i> Wall.	Plants (Basel)	12(16)		2023		
53965	37621414	Xu C., Xu Y., Wang Z., Zhang X., Wu Y., Lu X., Sun H., Wang L., Zhang Q., Zhang Q., Li X., Xiao J., Li X., Zhao M., Ouyang Y., Huang X., Zhang Q.	Spontaneous movement of a retrotransposon generated genic dominant male sterility providing a useful tool for rice breeding.	Natl Sci Rev	10(9)	nwad210	2023		
53966	37563288	Li G., Dulal N., Gong Z., Wilson R.A.	Unconventional secretion of Magnaporthe oryzae effectors in rice cells is regulated by tRNA modification and codon usage control.	Nat Microbiol	8(9)	1706-1716	2023		
53967	37600184	Zhang X., Wang Q., Fan G., Tang L., Shao Y., Mao B., Lv Q., Zhao B.	Utilizing differences in bTH tolerance between the parents of two-line hybrid rice to improve the purity of hybrid rice seed.	Front Plant Sci	14	1217893	2023		
53968	37553292	Cao X., Chen X., Liu Y., Wang C., Yue L., Elmer W.H., White J.C., Wang Z., Xing B.	Lanthanum Silicate Nanomaterials Enhance Sheath Blight Resistance in Rice: Mechanisms of Action and Soil Health Evaluation.	ACS Nano	17(16)	15821-15835	2023		
53969	37540410	Jung J.W., Kim S.R.	&#x3b2;1,3-galactosyltransferase on chromosome 6 is essential for the formation of Lewis a structure on N-glycan in Oryza sativa.	Transgenic Res.			2023		
53970	37549574	Chandra T., Jaiswal S., Iquebal M.A., Singh R., Gautam R.K., Rai A., Kumar D.	Revitalizing miRNAs mediated agronomical advantageous traits improvement in rice.	Plant Physiol. Biochem.	202	107933	2023		
53971	37555871	Yamasani M.R., Pandu V.R., Kalluru S., Bommaka R.R., Bandela R., Duddu B., Komeri S., Kumbha D., Vemireddy L.R.	Haplotype analysis of QTLs governing early seedling vigor-related traits under dry-direct-seeded rice (Oryza sativa L.) conditions.	Mol. Biol. Rep.	50(10)	8177-8188	2023		
53972	37635766	Mahtha S.K., Kumari K., Gaur V., Yadav G.	Cavity architecture based modulation of ligand binding tunnels in plant START domains.	Comput Struct Biotechnol J	21	3946-3963	2023	_,_,_,ROC1,ROC9,_,TF1L,_,_,TF1,ROC7,_,URL1,ROC2,_,ROC6,HOX9,HOX33,OUL1,_,HOX29,HB4,_,ROC3,LF1,ROC4,_,_	,,,Roc1(t), GL2-1, OsHDZ23, OsHDZIP23, HDZ23, HDZIP23,Roc9(t), Roc9, GL2-9, OsGL2, GL2, OsHDZ2, HDZ2, OsHDZIP2, HDZIP2,,OsTF1L, OsHDZ24, OsHDZIP24, HDZ24, HDZIP24,,,OSTF1(t), OsTF1, OsHDZ3, OsHDZIP3, HDZ3, HDZIP3,Roc7(t), Roc7, GL2-7, OsHDZ22, OsHDZIP22, HDZ22, HDZIP22,,ROC8, Roc8(t), Roc8, OsROC8, GL2-8, CRM1, OsCRM1, Os URL1, OsHDZ20, OsHDZIP20, HDZ20, HDZIP20,Roc2(t), Roc2, GL2-2, OsHDZ17, OsHDZIP17, HDZ17, HDZIP17,,Roc6(t), Roc6, GL2-6, OsHDZ32, OsHDZIP32, HDZ32, HDZIP32,Oshox9, OsHox9, OsHB2, HB2, OSHB2, OsHDZ37, OsHDZIP37, HDZ37, HDZIP37,Oshox33, OsHox33, OSHB3, HB3, SIP22, OsSIP22, OsHDZ40, OsHDZIP40, HDZ40, HDZIP40,ROC5, Roc5(t), Roc5, GL2-5, OsROC5, CLF1, OsCLF1, OsOUL1, OsHDZ7, OsHDZIP7, HDZ7, HDZIP7,,Oshox29, OsHox29, OSHB5, HB5,OSHB4, OsHox32, HOX32, OsHB4, Oshox32, PHB3, OsHDZ13, OsHDZIP13, HDZ13, HDZIP13,,Roc3(t), Roc3, GL2-3, OsHDZ39, OsHDZIP39, HDZ39, HDZIP39,HOX10, Oshox10, OsHox10, OsHB1, HB1, OSHB1, LF1/OsHB1, OsLF1, OsHDZ9, OsHDZIP9, HDZ9, HDZIP9,Roc4(t), Roc4, GL2-4, OsROC4, OsGL2-4, OsHDZ16, OsHDZIP16, HDZ16, HDZIP16,,
53973	37562527	Sun Y., Chen J., Wang W., Zhu L.	&#x3b1;-Galactosidase interacts with persistent organic pollutants to induce oxidative stresses in rice (Oryza sativa L.).	Environ. Pollut.	335	122353	2023		
53974	37687390	N&#xfa;&#xf1;ez-Cano J., Romera F.J., Prieto P., Garc&#xed;a MJ., Sevillano-Ca&#xf1;o J., Agust&#xed;-Brisach C., P&#xe9;rez-Vicente R., Ramos J., Lucena C.	Effect of the Nonpathogenic Strain <i>Fusarium oxysporum</i> FO12 on Fe Acquisition in Rice (<i>Oryza sativa</i> L.) Plants.	Plants (Basel)	12(17)		2023		
53975	37612625	Hua Y., Liu Q., Zhai Y., Zhao L., Zhu J., Zhang X., Jia Q., Liang Z., Wang D.	Genome-wide analysis of the HSP20 gene family and its response to heat and drought stress in Coix (Coix lacryma-jobi L.).	BMC Genomics	24(1)	478	2023		
53976	37761824	Xia H., Pu X., Zhu X., Yang X., Guo H., Diao H., Zhang Q., Wang Y., Sun X., Zhang H., Zhang Z., Zeng Y., Li Z.	Genome-Wide Association Study Reveals the Genetic Basis of Total flavonoid content in Brown Rice.	Genes (Basel)	14(9)		2023		
53977	37657298	Nazir F., Jahan B., Iqbal N., Rajurkar A.B., Siddiqui M.H., Khan M.I.R.	Methyl jasmonate influences ethylene formation, defense systems, nutrient homeostasis and carbohydrate metabolism to alleviate arsenic-induced stress in rice (Oryza sativa).	Plant Physiol. Biochem.	202	107990	2023		
53978	37629184	Wen P., He J., Zhang Q., Qi H., Zhang A., Liu D., Sun Q., Wang Y., Li Q., Wang W., Chen Z., Wang Y., Liu Y., Wan J.	SET domain group 703 Regulates Planthopper Resistance by Suppressing the Expression of Defense-Related Genes.	Int J Mol Sci	24(16)		2023	WRKY61,LECRKIX1,RPP13-L1,JRL11,PHS1,RLP7,RPR1,WAK3L2,PIK5L,XA39,WAK46,XA21L,WAK3L1,RGA5L1,PIK2L,CRK44L,RLP23	OsWRKY61, OsWRKY103, WRKY103,OsLecRK IX.1, OsLecRKIX.1, LecRKIX.1,OsRPP13-L1, OsRPP13-L, RPP13-L,OsJRL11, OsJRL9, JRL9,OsSET20, SET20, OsSDG703, SDG703, OsSUVH5, SUVH5, OsPHS1,OsRLP7,RPR1*, Rpr1-1, Rpr1, RPM1, OsRPM1, OsRSR1, RSR1,OsWAK3-L2, WAK3-L2, OsWAK3L2,Pik-5-L, OsPik-5-L, OsPIK5L,Xa39, OsRGA5-L2, RGA5-L2, OsRGA5L2, RGA5L2,OsWAK46, OsWAK2-L, WAK2-L, OsWAK2L, WAK2L,Xa21-L, OsXa21-L, OsXa21L,OsWAK3-L1, WAK3-L1, OsWAK3L1,OsRGA5-L1, RGA5-L1, OsRGA5L1,Pik-2-L, OsPik-2-L, OsPIK2L,OsCRK44-L, CRK44-L, OsCRK44L,OsRLP23
53979	37624920	Desmedt W., Ameye M., Filipe O., De Waele E., Van Nieuwerburgh F., Deforce D., Van Meulebroek L., Vanhaecke L., Kyndt T., H&#xf6;fte M., Audenaert K.	Molecular analysis of broad-spectrum induced resistance in rice by the green leaf volatile Z-3-hexenyl acetate.	J. Exp. Bot.			2023		
53980	37604972	Xie Y., Lv Y., Jia L., Zheng L., Li Y., Zhu M., Tian M., Wang M., Qi W., Luo L., De Gernier H., P&#xe9;lissier PM., Motte H., Lin S., Luo L., Xu G., Beeckman T., Xuan W.	Plastid-localized amino acid metabolism coordinates rice ammonium tolerance and nitrogen use efficiency.	Nat Plants	9(9)	1514-1529	2023		
53981	37648632	You X., Ning Y., Wang G.L.	Editing a rice CDP-DAG synthase confers broad-spectrum resistance.	Trends Plant Sci.			2023		
53982	37622088	Hake A.A., Ballichatla S., Barbadikar K.M., Magar N., Dutta S., Gokulan C.G., Awalellu K., Patel H.K., Sonti R.V., Phule A.S., Varma E.P., Ayeella P.G., Vamshi P., Sundaram R.M., Maganti S.M.	Combined strategy employing MutMap and RNA-seq reveals genomic regions and genes associated with complete panicle exsertion in rice.	Mol. Breed.	43(9)	69	2023		
53983	37615779	Dinh L.T., Ueda Y., Gonzalez D., Tanaka J.P., Takanashi H., Wissuwa M.	Novel QTL for lateral root Density and Length Improve Phosphorus Uptake in Rice (Oryza sativa L.).	Rice (N Y)	16(1)	37	2023		
53984	37633549	Xiong R., Tan X., Yang T., Wang H., Pan X., Zeng Y., Zhang J., Zeng Y.	Starch multiscale structure and physicochemical property alterations in high-quality indica rice quality and cooked rice texture under different nitrogen panicle fertilizer applications.	Int. J. Biol. Macromol.	252	126455	2023		
53985	37620360	Huang Y.H., Han J.Q., Ma B., Cao W.Q., Li X.K., Xiong Q., Zhao H., Zhao R., Zhang X., Zhou Y., Wei W., Tao J.J., Zhang W.K., Qian W., Chen S.Y., Yang C., Yin C.C., Zhang J.S.	Author Correction: A translational regulator MHZ9 modulates ethylene signaling in rice.	Nat Commun	14(1)	5169	2023		
53986	37651619	Yan Y., Ryu Y., Dechant B., Li B., Kim J.	Dark respiration explains nocturnal stomatal conductance in rice regardless of drought and nutrient stress.	Plant Cell Environ.			2023		
53987	37394281	Jang M.J., Hong W.J., Park Y.S., Jung K.H., Kim S.	Genomic basis of multiphase evolution driving divergent selection of zinc-finger homeodomain genes.	Nucleic Acids Res.	51(14)	7424-7437	2023	ZHD9,DREB1A,ACL-D,PASPRO2,DREB1B,PASPRO1	OsZHD9, ZHD_G15, OsZHD_G15,OsDREB1A, Os DREB1A, CBF3, OsCBF3, OsDREB1A/OsCBF3, ERF24, OsERF24, OsERF024, OsERF#024, AP2/EREBP#114, AP2/EREBP114, OsDREBL,OsZHD1, ZHD1, OsACL-D, ZHD_G6, OsZHD_G6,OsPASPRO2,OsDREB1B, ERF31, OsERF031, OsERF#031, OsERF31, AP2/EREBP#169, AP2/EREBP169, OsDREB1b, OsDREB1C, OsCBF1, CBF1,OsPASPRO1
53988	37578160	Xu J., Wang C., Wang F., Liu Y., Li M., Wang H., Zheng Y., Zhao K., Ji Z.	pwl1, a G-type lectin receptor-like kinase, positively regulates leaf senescence and heat tolerance but negatively regulates resistance to Xanthomonas oryzae in rice.	Plant Biotechnol. J.			2023	NAC58,PWL1,_,EAS1 ,SGR,LRD43,KAT1,AMTR1,WRKY53	OsNAP, NAP, ONAC058, ONAC58, Os PS1, PS1, OsCTb1, CTb1,RLCK121, OsRLCK121, SDK13, OsSDK13, OsPWL1,OsSAG12, SAG12,OsPAO, PAO, OsACD1, ACD1, OsEAS1, RCD2, OsRCD2,sgr(t), sgr, OsSGR, OsSgr, SGR1, OsSGR1,RLS1, OsRLS1, OsLRD43, NOE2, OsNOE2,OsI57, I57, OsKAT1, OsACAA1, ACAA1,Osh36, OsH36, H36, OsAMTR1,OsWRKY53, WRKY-53
53989	37584314	Jiang Y., Zhang A., He W., Li Q., Zhao B., Zhao H., Ke X., Guo Y., Sun P., Yang T., Wang Z., Jiang B., Shen J., Li Z.	GRAS family member LATERAL SUPPRESSOR regulates the initiation and morphogenesis of watermelon lateral organs.	Plant Physiol.			2023		
53990	37594528	Ling Y., Jinshi Z., Yilu Q., Jinjin L., Mei L., Weilin Z.	Transcriptome profiling reveals ethylene formation in rice seeds by trichloroisocyanuric acid.	Plant Cell Rep.	42(11)	1721-1732	2023		
53991	37595063	Deng X.L., Li J.Q., Yi J.M., Lian R.J., Zhang Z.Y., Li J.H., He S., Bai L.Y.	A pH-responsive MOF-functionalized hollow mesoporous silica controlled herbicide delivery system exhibits enhanced activity against ACCase-herbicide-resistant weeds.	Pest Manag. Sci.			2023		
53992	37661542	Fan F., Liu M., Li N., Guo Y., Yuan H., Si F., Cheng M., Chen G., Cai M., Li N., Zhang Y., Yu Y., Pi L., Yang H., Yang F., Wang K., Li S.	Gain-of-function allele of HPY1 coordinates source and sink to increase grain yield in rice.	Science Bulletin	68(19)	2155-2159	2023	POW1,FLO2,RBCS5,RBCS,RBCS4,CCP1	OsPOW1, PANDA, OsPANDA, HPY1, OsHPY1, OsHARBI1-22, HARBI1-22,flo2, flo3(t), Osflo2, Osflo3(t), Osflo-2, flo-2, FLO2-1, FLO2-2,RbcS5, OsRBCS5, OsRbcS5, RbcS3, OsRbcS3,rbcS, OsRbcS, RBCS-C, RbcS2, OsRBCS2, RbcS1, OsRbcS2, OsrbcS1,RbcS, RbcS4, OsRBCS4, OsRbcS4,DFO1, EMF1, OsDFO1, OsEMF1, OsCCP1
53993	37731237	Zheng Z.W., Zhao H.Y., Liang X.Y., Wang Y.J., Wang C.H., Gong G.Y., Huang J.Y., Zhang G.Q., Wang S.K., Liu Z.P.	<i>qGL3.4</i> controls kernel size and plant architecture in rice.	Yi Chuan	45(9)	835-844	2023		
53994	37691541	Li J., Li Q., Wang W., Zhang X., Chu C., Tang X., Zhu B., Xiong L., Zhao Y., Zhou D.X.	DELLA-mediated gene repression is maintained by chromatin modification in rice.	EMBO J.		e114220	2023		
53995	37739867	Awale P., McSteen P.	Hormonal regulation of inflorescence and intercalary meristems in grasses.	Curr. Opin. Plant Biol.		102451	2023		
53996	37579590	Wang Y., Li P., Tian Y., Xiong Z., Zheng Z., Yi Z., Ao H., Wang Q., Li J.	Bacterial seed endophyte and abiotic factors influence cadmium accumulation in rice (Oryza sativa) along the Yangtze River area.	Ecotoxicol. Environ. Saf.	263	115352	2023		
53997	37731231	Lian X.P., Huang G.F., Zhang Y.J., Zhang J., Hu F.Y., Zhang S.L.	The discovery and utilization of favorable genes in <i>Oryza longistaminata</i>.	Yi Chuan	45(9)	765-780	2023		
53998	37810036	Chen Y.N., Ho C.H.	CIPK15-mediated inhibition of NH4+ transport protects <i>Arabidopsis</i> from submergence.	Heliyon	9(9)	e20235	2023		
53999	37762290	Ma Y., Wen Y., Wang C., Wu Z., Yuan X., Xiong Y., Chen K., He L., Zhang Y., Wang Z., Li L., Yang Z., Sun Y., Chen Z., Ma J.	ZIP Genes Are Involved in the Retransfer of Zinc Ions during the Senescence of Zinc-Deficient Rice Leaves.	Int J Mol Sci	24(18)		2023		
54000	37764161	Hern&#xe1;ndez I., Taul&#xe9; C., P&#xe9;rez-P&#xe9;rez R., Battistoni F., Fabiano E., Villanueva-Guerrero A., N&#xe1;poles MC., Herrera H.	Endophytic Seed-Associated Bacteria as Plant Growth Promoters of Cuban Rice (<i>Oryza sativa</i> L.).	Microorganisms	11(9)		2023		
54001	37810650	Poomipuen K., Sakulthaew C., Chokejaroenrat C., Angkaew A., Techauay K., Poompoung T., Teingtham K., Phansak P., Lueangjaroenkit P., Snow D.D.	Dual Activation of Peroxymonosulfate Using MnFe2O4/g-C3N4 and Visible Light for the Efficient Degradation of Steroid Hormones: Performance, Mechanisms, and Environmental Impacts.	ACS Omega	8(39)	36136-36151	2023		
54002	37808536	Lee G.H., Min C.W., Jang J.W., Gupta R., Kim S.T.	Dataset on post-translational modifications proteome analysis of MSP1-overexpressing rice leaf proteins.	Data Brief	50	109573	2023		
54003	37765454	Praphasanobol P., Purnama P.R., Junbuathong S., Chotechuen S., Moung-Ngam P., Kasettranan W., Paliyavuth C., Comai L., Pongpanich M., Buaboocha T., Chadchawan S.	Genome-Wide Association Study of Starch Properties in Local Thai Rice.	Plants (Basel)	12(18)		2023		
54004	37714899	Spatola Rossi T., Tolmie A.F., Nichol T., Pain C., Harrison P., Smith T.J., Fricker M., Kriechbaumer V.	Recombinant expression and subcellular targeting of the particulate methane monooxygenase (pMMO) protein components in plants.	Sci Rep	13(1)	15337	2023		
54005	37731236	Chen M.J., Liu G., Xiao Y.Q., Yu H., Li J.	Breeding of ZhongKeFaZaoGeng1 by molecular design.	Yi Chuan	45(9)	829-834	2023		
54006	37699259	Balasjin N.M., Maki J.S., Schl&#xe4;ppi MR.	<i>Pseudomonas mosselii</i> improves cold tolerance of Asian rice (<i>Oryza sativa</i> L.) in a genotype-dependent manner by increasing proline in <i>japonica</i> and reduced glutathione in <i>indica</i> varieties.	Can. J. Microbiol.			2023		
54007	37735869	Wang H.Q., Zhao X.Y., Xuan W., Wang P., Zhao F.J.	Rice roots avoid asymmetric heavy metal and salinity stress via an RBOH-ROS-auxin signaling cascade.	Mol Plant	16(10)	1678-1694	2023		
54008	37762614	Yang X., Yan S., Li Y., Li G., Sun S., Li J., Cui Z., Huo J., Sun Y., Wang X., Liu F.	Comparison of Transcriptome between Tolerant and Susceptible Rice Cultivar Reveals Positive and Negative Regulators of Response to <i>Rhizoctonia solani</i> in Rice.	Int J Mol Sci	24(18)		2023		
54009	37494415	Mashiguchi K., Morita R., Tanaka K., Kodama K., Kameoka H., Kyozuka J., Seto Y., Yamaguchi S.	Activation of&#xa0;Strigolactone Biosynthesis by the DWARF14-LIKE/KARRIKIN-INSENSITIVE2 Pathway in&#xa0;Mycorrhizal Angiosperms, but Not in&#xa0;Arabidopsis, a Non-mycorrhizal Plant.	Plant Cell Physiol.	64(9)	1066-1078	2023	4OCLAMT1,D3,SLB1,KAI2,SLB2,D14L2,NSP2,D17,D27	Os4OCLAMT1,d3, dwf3, D3/OsMAX2, Os_F0760, SOL1, OsORE9, ORE9, MAX2, OsRFPH2-10, RFPH2-10, OsD3,  OsFBL27, FBL27,OsSLB1, Os900/CYP711A2, Os900, CYP711A2, OsCYP711A2, OsCO, CO,D14L, OsD14L, OsKAI2,CYP711A1, OsCYP711A1, Os1400/CYP711A3, Os1400, CYP711A3, OsCYP711A3, OsMAX1-1400, MAX1-1400,OsD14L2, D14L2a, OsD14L2a,Os NSP2, OsNSP2, OsGRAS-13, OsGRAS13, GRAS-13, GRAS13, OsGRAS12, GRAS12,d17(t), dwf14, d17, htd1, OsCCD7, CCD7, D17/HTD1, HTD1, OsHTD1, OsD17,d27(d t), dt, dwf23, d27, OsD27
54010	37421895	Hu L.L., Chen S., Shen M.Y., Huang Q.Y., Li H.G., Sun S.C., Wang J.L., Luo X.Q.	Aflatoxin B1 impairs porcine oocyte quality via disturbing intracellular membrane system and ATP production.	Ecotoxicol. Environ. Saf.	263	115213	2023		
54011	37724960	Lv S., Lin Z., Shen J., Luo L., Xu Q., Li L., Gui J.	OsTCP19 coordinates lignin suppression and cellulose biosynthesis activation to modify lodging resistance in rice.	J. Exp. Bot.			2023		
54012	37725285	Pradhan M., Bastia D., Samal K.C., Dash M., Sahoo J.P.	Pyramiding resistance genes for bacterial leaf blight (Xanthomonas oryzae pv. Oryzae) into the popular rice variety, Pratikshya through marker assisted backcrossing.	Mol. Biol. Rep.			2023		
54013	37700662	Jin B.J., Chun H.J., Choi C.W., Lee S.H., Cho H.M., Park M.S., Baek D., Park S.Y., Lee Y.H., Kim M.C.	Host-induced gene silencing is a promising biological tool to characterize the pathogenicity of Magnaporthe oryzae and control fungal disease in rice.	Plant Cell Environ.			2023		
54014	37765407	Li Z., Zhou T., Zhu K., Wang W., Zhang W., Zhang H., Liu L., Zhang Z., Wang Z., Wang B., Xu D., Gu J., Yang J.	Effects of Salt Stress on grain yield and Quality Parameters in Rice Cultivars with Differing salt tolerance.	Plants (Basel)	12(18)		2023		
54015	37723448	Li X., Huang X., Wen M., Yin W., Chen Y., Liu Y., Liu X.	Cytological observation and RNA-seq analysis reveal novel miRNAs high expression associated with the pollen fertility of neo-tetraploid rice.	BMC Plant Biol.	23(1)	434	2023		
54016	37731228	Bian Z., Cao D.P., Zhuang W.S., Zhang S.W., Liu Q.Q., Zhang L.	Revelation of rice molecular design breeding: the blend of tradition and modernity.	Yi Chuan	45(9)	718-740	2023		
54017	37762286	Anand R., Divya D., Mazumdar-Leighton S., Bentur J.S., Nair S.	Expression Analysis Reveals Differentially Expressed Genes in BPH and WBPH Associated with Resistance in Rice RILs Derived from a Cross between RP2068 and TN1.	Int J Mol Sci	24(18)		2023		
54018	37790791	Huang Y., Mei G., Cao D., Qin Y., Yang L., Ruan X.	Spermidine enhances heat tolerance of rice seeds during mid-filling stage and promote subsequent seed germination.	Front Plant Sci	14	1230331	2023		
54019	37722507	Wang R., Fei Y., Pan Y., Zhou P., Adegoke J.O., Shen R., Lan P.	IMA peptides function in iron homeostasis and cadmium resistance.	Plant Sci.	336	111868	2023		
54020	37765412	Zhang H., Gai C., Shao M., Fang L., Li X., Song Y., Zeng R., Chen D.	Herbivory by Striped Stem Borer Triggers Polyamine Accumulation in Host Rice Plants to Promote Its Larval Growth.	Plants (Basel)	12(18)		2023		
54021	37728044	Lin Y., Zhu Y., Cui Y., Qian H., Yuan Q., Chen R., Lin Y., Chen J., Zhou X., Shi C., He H., Hu T., Gu C., Yu X., Zhu X., Wang Y., Qian Q., Zhang C., Wang F., Shang L.	Identification of natural allelic variation in TTL1 controlling thermotolerance and grain size by a rice super pan-genome.	J Integr Plant Biol			2023	CNGC7,TTL1,SCT1,LK3,WRKY10,NAC8,BZIP50	OsCNGC7, OsCNGC14, CNGC14 ,OsRFPV-7, RFPV-7, OsRFPV7, RFPV7, OsRING200, RING200, OsTTL1,OsSCT1, OsCAMTA1, CAMTA1,lk3(t), lk3(t)*, SG3, GS3, SG3-GS3, OsGW3, OsGS3, RGG3/GS3/Mi/OsGGC1, RGG3, Mi, OsGGC1, GGC1, OsSYL3, SYL3, TT2, OsTT2,OsWRKY10,OsNAC8, ONAC074, ONAC74, NAC74, OsNAC8/ONAC074, OsNTL3, NTL3,OsbZIP60, bZIP50, OsbZIP50, OsbZIP74, bZIP74, OsbZIP50-S
54022	37799552	Qin Y., Cai Q., Ling Y., Chen X., Xu J., Huang G., Liang S., Yuan X., Yang X.M., Lu D., Wang X., Wei Y.	Arbuscular mycorrhizal fungi improve selenium uptake by modulating root transcriptome of rice (Oryza sativa L.).	Front Plant Sci	14	1242463	2023		
54023	37699038	Zou T., Zhang K., Zhang J., Liu S., Liang J., Liu J., Zhu J., Liang Y., Wang S., Deng Q., Liu H., Jin J., Li P., Li S.	DWARF AND LOW-TILLERING 2 functions in brassinosteroid signaling and controls plant architecture and grain size in rice.	Plant J.			2023		
54024	37765500	Sun W., Sun Q., Tian L., Sun Y., Yu S.	A Structure Variation in <i>qPH8.2</i> Detrimentally Affects Plant Architecture and Yield in Rice.	Plants (Basel)	12(18)		2023		
54025	37749887	Zhu Y., Yuzuak S., Sun X., Xie D.Y.	Identification and biosynthesis of plant papanridins, a group of novel oligomeric flavonoids.	Mol Plant			2023		
54026	37766431	Wang W., Gui S., Wang Y.	Uncover the mystery of pleiotropic effects of PROG1 during rice domestication.	Mol Plant			2023		
54027	37758969	de Verdal H., Baertschi C., Frouin J., Quintero C., Ospina Y., Alvarez M.F., Cao T.V., Bartholom&#xe9; J., Grenier C.	Optimization of Multi-Generation Multi-location Genomic Prediction Models for Recurrent Genomic Selection in an Upland Rice Population.	Rice (N Y)	16(1)	43	2023		
54028	37756295	Bartholom&#xe9; J., Frouin J., Brottier L., Cao T.V., Boisnard A., Ahmadi N., Courtois B.	Genomic selection for salinity tolerance in japonica rice.	PLoS ONE	18(9)	e0291833	2023		
54029	37535690	Ntakirutimana F., Tranchant-Dubreuil C., Cubry P., Chougule K., Zhang J., Wing R.A., Adam H., Lorieux M., Jouannic S.	Genome-wide association analysis identifies natural allelic variants associated with panicle architecture variation in African rice, Oryza glaberrima Steud.	G3 (Bethesda)	13(10)		2023		
54030	37810402	Reavis M., Purcell L.C., Pereira A., Naithani K.	Effects of measurement methods and growing conditions on phenotypic expression of photosynthesis in seven diverse rice genotypes.	Front Plant Sci	14	1106672	2023		
54031	37833888	Yang S., Zhou J., Li Y., Wu J., Ma C., Chen Y., Sun X., Wu L., Liang X., Fu Q., Xu Z., Li L., Huang Z., Zhu J., Jia X., Ye X., Chen R.	AP2/EREBP Pathway Plays an Important Role in Chaling Wild Rice Tolerance to Cold Stress.	Int J Mol Sci	24(19)		2023		
54032	37834249	He Y., Guan H., Li B., Zhang S., Xu Y., Yao Y., Yang X., Zha Z., Guo Y., Jiao C., Cai H.	Transcriptome Analysis Reveals the Dynamic and Rapid Transcriptional Reprogramming Involved in Heat Stress and Identification of Heat Response Genes in Rice.	Int J Mol Sci	24(19)		2023		
54033	37743547	Liu Z., Yang Q., Wu P., Li Y., Lin Y., Liu W., Guo S., Liu Y., Huang Y., Xu P., Qian Y., Xie Q.	Dynamic monitoring of TGW6 by selective autophagy during grain development in rice.	New Phytol.			2023		
54034	37755070	Ma Y., He Y.H., Deng P., Zhang S.Y., Ding Y.Y., Zhang Z.J., Zhang B.Q., An J.X., Wang Y.R., Liu Y.Q.	Repurposing Salicylamides to Combat Phytopathogenic Bacteria and Induce Plant Defense Responses.	Chem. Biodivers.		e202300998	2023		
54035	37738583	Ma M., Zhu T., Cheng X., Li M., Yuan G., Li C., Zhang A., Lu C., Fang Y., Zhang Y.	Sucrose phosphate synthase 8 is required for the remobilization of carbon reserves in rice stems during grain filling.	J. Exp. Bot.			2023		
54036	37777563	Hazarika D.J., Bora S.S., Naorem R.S., Sharma D., Boro R.C., Barooah M.	Genomic insights into Bacillus subtilis MBB3B9 mediated aluminium stress mitigation for enhanced rice growth.	Sci Rep	13(1)	16467	2023		
54037	37818314	Gautam R.K., Singh P.K., Sakthivel K., Venkatesan K., Rao S.S., Srikumar M., Vijayan J., Rakesh B., Ray S., Akhtar J., Meena B.R., Langyan S., Ali S., Krishnamurthy S.L.	Marker-assisted enhancement of bacterial blight (<i>Xanthomonas oryzae</i> pv<i>. oryzae</i>) resistance in a salt-tolerant rice variety for sustaining rice production of tropical islands.	Front Plant Sci	14	1221537	2023		
54038	37743625	Peng G., Liu M., Zhu L., Luo W., Wang Q., Wang M., Chen H., Luo Z., Xiao Y., Zhang Y., Hong H., Liu Z., Zhou L., Guo G., Wang Y., Zhuang C., Zhou H.	The E3 ubiquitin ligase CSIT1 regulates critical sterility-inducing temperature by ribosome-associated quality control to safeguard two-line hybrid breeding in rice.	Mol Plant	16(10)	1695-1709	2023		
54039	37437116	Xu Z., Guo W., Mo B., Pan Q., Lu J., Wang Z., Peng X., Zhang Z.	Mitogen-activated protein kinase 2 specifically regulates photorespiration in rice.	Plant Physiol.	193(2)	1381-1394	2023	SGAT,_	OsSGAT,ALT-2, OsGGAT, GGAT
54040	37836181	Chinachanta K., Shutsrirung A., Santasup C., Pathom-Aree W., Luu D.T., Herrmann L., Lesueur D., Prom-U-Thai C.	Rhizoactinobacteria Enhance Growth and Antioxidant Activity in Thai Jasmine Rice (<i>Oryza sativa</i>) KDML105 Seedlings under Salt Stress.	Plants (Basel)	12(19)		2023		
54041	37743376	Zhang Z., Huo W., Wang X., Ren Z., Zhao J., Liu Y., He K., Zhang F., Li W., Jin S., Yang D.	Origin, evolution, and diversification of the wall-associated kinase gene family in plants.	Plant Cell Rep.			2023		
54042	37833950	Yang W., Chen Y., Gao R., Chen Y., Zhou Y., Xie J., Zhang F.	MicroRNA2871b of Dongxiang Wild Rice (<i>Oryza rufipogon</i> Griff.) Negatively Regulates Cold and Salt Stress Tolerance in Transgenic Rice Plants.	Int J Mol Sci	24(19)		2023		
54043	37739122	Long Y., Wang C., Liu C., Li H., Pu A., Dong Z., Wei X., Wan X.	Molecular mechanisms controlling grain size and weight and their biotechnological breeding applications in maize and other cereal crops.	Journal of Advanced Research			2023		
54044	37403377	Ueguchi-Tanaka M.	Gibberellin metabolism and signaling.	Biosci. Biotechnol. Biochem.	87(10)	1093-1101	2023		
54045	37780391	Shamshad A., Rashid M., Jankuloski L., Ashraf K., Sultan K., Alamri S., Siddiqui M.H., Munir T., Zaman Q.U.	Effect of ethyl methanesulfonate mediated mutation for enhancing morpho-physio-biochemical and yield contributing traits of fragrant rice.	PeerJ	11	e15821	2023		
54046	37835188	Zhu D., Zheng X., Yu J., Chen M., Li M., Shao Y.	Effects of Starch Molecular Structure and Physicochemical Properties on Eating Quality of <i>Indica</i> Rice with Similar Apparent Amylose and Protein Contents.	Foods	12(19)		2023		
54047	37773271	Liang C., Guan Z., Wei K., Yu W., Wang L., Chen X., Wang Y.	Characteristics of antioxidant capacity and metabolomics analysis of flavonoids in the bran layer of green glutinous rice (Oryza sativa L. var. Glutinosa Matsum).	Sci Rep	13(1)	16372	2023		
54048	37743422	Mahendran A., Yadav M.C., Tiwari S., Bairwa R.K., Krishnan S.G., Rana M.K., Singh R., Mondal T.K.	Population structure and genetic differentiation analyses reveal high level of diversity and allelic richness in crop wild relatives of AA genome species of rice (Oryza sativa L.) in India.	J. Appl. Genet.			2023		
54049	37775539	Patni B., Bhattacharyya M., Pokhriyal A.	The role of signaling compounds in enhancing rice allelochemicals for sustainable agriculture: an overview.	Planta	258(5)	90	2023		
54050	37841397	Udhaya Nandhini D., Venkatesan S., Senthilraja K., Janaki P., Prabha B., Sangamithra S., Vaishnavi S.J., Meena S., Balakrishnan N., Raveendran M., Geethalakshmi V., Somasundaram E.	Metabolomic analysis for disclosing nutritional and therapeutic prospective of traditional rice cultivars of Cauvery deltaic region, India.	Front Nutr	10	1254624	2023		
54051	37765501	Lv M., Hou D., Wan J., Ye T., Zhang L., Fan J., Li C., Dong Y., Chen W., Rong S., Sun Y., Xu J., Cai L., Gao X., Zhu J., Huang Z., Xu Z., Li L.	<i>OsWRKY97,</i> an Abiotic Stress-Induced Gene of Rice, Plays a Key Role in drought tolerance.	Plants (Basel)	12(18)		2023		
54052	37770835	Du Y.W., Liu L., Feng N.J., Zheng D.F., Liu M.L., Zhou H., Deng P., Wang Y.X., Zhao H.M.	Combined transcriptomic and metabolomic analysis of alginate oligosaccharides alleviating salt stress in rice seedlings.	BMC Plant Biol.	23(1)	455	2023		
54053	37683757	Lei D., Cao H., Zhang K., Mao K., Guo Y., Huang J.H., Yang G., Zhang H., Feng X.	Coupling of different antioxidative systems in rice under the simultaneous influence of selenium and cadmium.	Environ. Pollut.	337	122526	2023		
54054	37746015	Tasnim A., Jahan I., Azim T., Karmoker D., Seraj Z.I.	Paired growth of cultivated and halophytic wild rice under salt stress induces bacterial endophytes and gene expression responses.	Front Plant Sci	14	1244743	2023		
54055	37689677	Wen Y., Wu K., Chai B., Fang Y., Hu P., Tan Y., Wang Y., Wu H., Wang J., Zhu L., Zhang G., Gao Z., Ren D., Zeng D., Shen L., Dong G., Zhang Q., Li Q., Qian Q., Hu J.	nlg1, encoding a mitochondrial membrane protein, controls leaf and grain development in rice.	BMC Plant Biol.	23(1)	418	2023	MTATPS1,CSLF6,CESA5,VDAC7,TIM17,TOM22,CSLA3,ARF8,IAA2,IAA8,CESA3,NLG1,TIM23,_,CSLC9	OsmtATPS1, mtATPS1,OsCslF6, OsCSLF6, OsCLD3, CLD3,OsCesA5, OsCESA5, OS_CESA05,OSVDAC7, osvdac7, OsVDAC7, TOM40, OsTOM40,Tim17, OsTim17,Tom22, OsTom22,OsCslA3, OsCSLA3 ,OsARF8, OsARF12, ARF12,OsIAA2,OsIAA8,OsCesA3, OsCESA3, OS_CESA03,Tim21, OsTim21, OsNLG1,Tim23, OsTim23,,OsCslC9, OsCSLC9
54056	37688861	Huang G., Huang Y., Ding X., Ding M., Wang P., Wang Z., Jiang Y., Zou L., Zhang W., Li Z.	Effects of high manganese-cultivated seedlings on cadmium uptake by various rice (Oryza sativa L.) genotypes.	Ecotoxicol. Environ. Saf.	264	115440	2023		
54057	37696192	Zhu J., Wei R., Wang X., He D., Jiang X., Wang M., Yang Y., Yang L.	Polyphosphate promotes oxidation resistance of ppk-expressing transgenic rice in low phosphorus culture.	Plant Physiol. Biochem.	203	108006	2023		
54058	37682975	Nguyen H.T., Cheaib M., Fournel M., Rios M., Gantet P., Laplaze L., Guyomarc'h S., Riemann M., Heitz T., Petitot A.S., Champion A.	Genetic analysis of the rice jasmonate receptors reveals specialized functions for OsCOI2.	PLoS ONE	18(9)	e0291385	2023		
54059	37669699	Shao Z., Wang S., Liu N., Wang W., Zhu L.	Interactions between sulfonamide homologues and glycosyltransferase induced metabolic disorders in rice (Oryza sativa L.).	Environ. Pollut.	336	122486	2023		
54060	37687237	Yang R., Tang J., Zhao Q., Piao Z., Lee G., Wan C., Bai J.	Starch Properties of Roasting Rice from Naturally High-Resistant Starch Rice Varieties.	Molecules	28(17)		2023		
54061	37660256	Xia J.Q., He D.Y., Liang Q.Y., Zhang Z.Y., Wu J., Zhang Z.S., Zhang J., Wang L., Zhang C.H., Zhao P.X., Xiang C.B.	Loss of OsARF18 function confers glufosinate resistance in rice.	Mol Plant	16(9)	1355-1358	2023		
54062	37731986	Simon E.V., Hechanova S.L., Hernandez J.E., Li C.P., T&#xfc;lek A., Ahn E.K., Jairin J., Choi I.R., Sundaram R.M., Jena K.K., Kim S.R.	Available cloned genes and markers for genetic improvement of biotic stress resistance in rice.	Front Plant Sci	14	1247014	2023		
54063	37668809	Wang Z., Guo Z., Zou T., Zhang Z., Zhang J., He P., Song R., Liu Z., Zhu H., Zhang G., Fu X.	Substitution Mapping and Allelic Variations of the Domestication Genes from O. rufipogon and O. nivara.	Rice (N Y)	16(1)	38	2023		
54064	37734270	Liu J., Khan S., Hu Y., Yin L., Huang J.	Physiological mechanisms of exogenous organic acids to alleviate aluminum toxicity in seedlings of mungbean, buckwheat, and rice.	Plant Physiol. Biochem.	203	108031	2023		
54065	37731235	Lv Q.W., Yang Y.F.	The biological functions of peptide signaling in plant and the advances on its utilization for crop improvement.	Yi Chuan	45(9)	813-828	2023		
54066	37702838	Kruthika N., Jithesh M.N.	Morpho-physiological profiling of rice (Oryza sativa) genotypes at germination stage with contrasting tolerance to salinity stress.	J. Plant Res.			2023		
54067	37715876	Jiang Z., Yang H., Zhu M., Wu L., Yan F., Qian H., He W., Liu D., Chen H., Chen L., Ding Y., Sakr S., Li G.	The Inferior Grain Filling Initiation Promotes the Source Strength of Rice Leaves.	Rice (N Y)	16(1)	41	2023		
54068	37713042	Wang X., Xie L., Fang J., Pang Y., Xu J., Li Z.	Identification of Candidate Genes that Affect the Contents of 17 Amino Acids in the Rice Grain Using a Genome-Wide Haplotype Association Study.	Rice (N Y)	16(1)	40	2023		
54069	37764171	Weinand T., El-Hasan A., Asch F.	Role of <i>Bacillus</i> spp. Plant Growth Promoting Properties in Mitigating Biotic and Abiotic Stresses in Lowland Rice (<i>Oryza sativa</i> L.).	Microorganisms	11(9)		2023		
54070	37755044	Gateta T., Nacoon S., Seemakram W., Ekprasert J., Theerakulpisut P., Sanitchon J., Suwannarach N., Boonlue S.	The Potential of Endophytic Fungi for Enhancing the Growth and Accumulation of Phenolic Compounds and Anthocyanin in Maled Phai Rice (<i>Oryza sativa</i> L.).	J Fungi (Basel)	9(9)		2023		
54071	37699996	Yadav V.K., Jalmi S.K., Tiwari S., Kerkar S.	Deciphering shared attributes of plant long non-coding RNAs through a comparative computational approach.	Sci Rep	13(1)	15101	2023		
54072	37733139	Shi H., Xiong Q., Zhao Z., Zhou L., Yin J., Lu X., Chen X., Wang J.	Disruption of the Novel Small Protein Rbr7 Leads to Enhanced Plant Resistance to Blast Disease.	Rice (N Y)	16(1)	42	2023	PR10A,RSOSPR10,WRKY55,RBR7,WRKY19,PR1A,NH1	PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,RSOsPR10, RsOsPR10a, OsPR10a, OsPR10alpha, OsPR10, PR10, OsBETV1, BETV1,OsWRKY55,OsRBR7,OsWRKY19,OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1, OsPR1b, PR1alpha, OsPR1alpha,OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2, DLN5, OsDLN5,  OsBTBA1, BTBA1
54073	37834181	Gu L., Cao Y., Chen X., Wang H., Zhu B., Du X., Sun Y.	The Genome-Wide Identification, Characterization, and Expression Analysis of the strictosidine synthase-like Family in Maize (<i>Zea mays</i> L.).	Int J Mol Sci	24(19)		2023	STRL19,STRL18,STRL3,TGW6,STRL2,STRL12,STRL10,STRL5,SSL7,STRL8,STRL21,STRL13,STRL20,STRL15,SSL12,STRL14	OsSTRL19, OsSSL14, SSL14,OsSTRL18, OsSSL13, SSL13,OsSTRL3, OsSSL2, SSL2,tgw6, OsSTRL7, STRL7, OsSSL4, SSL4,OsSTRL2, OsSSL1, SSL1,OsSTRL12, OsSSL8, SSL8,OsSTRL10, OsSSL6, SSL6,OsSTRL5, OsSSL3, SSL3,OsSSL7,OsSTRL8, OsSSL5, SSL5,OsSTRL21, OsSSL16, SSL16,OsSTRL13, OsSSL9, SSL9,OsSTRL20, OsSSL15, SSL15,OsSTRL15, OsSSL11, SSL11,OsSSL12,OsSTRL14, OsSSL10, SSL10
54074	37824739	Gao P., Zhao H., Luo Z., Lin Y., Feng W., Li Y., Kong F., Li X., Fang C., Wang X.	SoyDNGP: a web-accessible deep learning framework for genomic prediction in soybean breeding.	Brief. Bioinformatics	24(6)		2023		
54075	37762665	Xiang X., Liu S., Li H., Danso Ofori A., Yi X., Zheng A.	Defense Strategies of Rice in Response to the Attack of the Herbivorous Insect, <i>Chilo suppressalis</i>.	Int J Mol Sci	24(18)		2023		
54076	37572350	Zhang Y., Chen G., Deng L., Gao B., Yang J., Ding C., Zhang Q., Ouyang W., Guo M., Wang W., Liu B., Zhang Q., Sung W.K., Yan J., Li G., Li X.	Integrated 3D genome, epigenome&#xa0;and transcriptome analyses reveal transcriptional coordination of circadian rhythm in rice.	Nucleic Acids Res.	51(17)	9001-9018	2023		
54077	37828923	Zhang Q., Teng R., Yuan Z., Sheng S., Xiao Y., Deng H., Tang W., Wang F.	Integrative transcriptomic analysis deciphering the role of rice bHLH transcription factor Os04g0301500 in mediating responses to biotic and abiotic stresses.	Front Plant Sci	14	1266242	2023		
54078	37737275	Chen R., Xiao N., Lu Y., Tao T., Huang Q., Wang S., Wang Z., Chuan M., Bu Q., Lu Z., Wang H., Su Y., Ji Y., Ding J., Gharib A., Liu H., Zhou Y., Tang S., Liang G., Zhang H., Yi C., Zheng X., Cheng Z., Xu Y., Li P., Xu C., Huang J., Li A., Yang Z.	A de novo evolved gene contributes to rice grain shape difference between indica and japonica.	Nat Commun	14(1)	5906	2023	GSE9	OsGSE9
54079	37766452	Silva A., Montoya M.E., Quintero C., Cuasquer J., Tohme J., Graterol E., Cruz M., Lorieux M.	Genetic bases of resistance to the rice hoja blanca disease deciphered by a QTL approach.	G3 (Bethesda)			2023		
54080	37688553	Ren Y., Liu B., Jiang H., Cheng W., Tao L., Wu K., Wang H., Shen G., Fang Y., Zhang C., Wu Y., Fu X., Ye Y.	Precision editing of GLR1 confers glufosinate resistance without yield penalty in rice.	Plant Biotechnol. J.			2023	GLN1;1,CYP51G3,RST1,CATA	OsGLN1;1, GS1, RGS28, OsGS1;1, GS1;1, OsGS, GS1, OsGS1, GLN1-1, OsGS1-1, GS1-1, GS1.1, OsGS1.1,OsCYP51G3,OsARF10, ARF10, OsARF18, ARF18, OsRST1, GLR1, OsGLR1,CATA1, Cat A1*, OSCAT-A, Cat2, CatA1, CAT-A, OsCatA, OsCAT, CAT, catA, OSCATA, OsCATc, OsCATA, OsCAT1A, CAT1, OsCAT1, OsCATC, OsCAT2
54081	37746023	Liu S., Xiong Z., Zhang Z., Wei Y., Xiong D., Wang F., Huang J.	Exploration of chlorophyll fluorescence characteristics gene regulatory in rice (<i>Oryza sativa</i> L.): a genome-wide association study.	Front Plant Sci	14	1234866	2023		
54082	37658932	Hameed K., Habib M., Awan F.S., Sadia B., Hussain S., Qamar Z.U., Alzahrani H.A.S.	Detection of genetic divergence among putative ethyl methane sulfonate mutants of super basmati using microsatellite markers.	Mol. Biol. Rep.			2023		
54083	37732315	Liu Z., Sun H., Zhang Y., Du M., Xiang J., Li X., Chang Y., Sun J., Cheng X., Xiong M., Zhao Z., Liu E.	Mining the candidate genes of rice panicle traits via a genome-wide association study.	Front Genet	14	1239550	2023		
54084	37660343	Gong C., Liu D., Wang Q., Ma Y., Zhan X., Zhang S., Awais M., Pu J., Yang J., Wang X.	Metabolic Resistance of <i>Sogatella furcifera</i> (Hemiptera: Delphacidae) toward Pymetrozine Involves the Overexpression of <i>CYP6FJ3</i>.	J. Agric. Food Chem.	71(39)	14179-14191	2023		
54085	26408096	Yin J., Zhu X., Yuan C., Wang J., Li W., Wang Y., He M., Cheng Q., Ye B., Chen W., Linghu Q., Wang J., Ma B., Qin P., Li S., Chen X.	Characterization and fine mapping of a novel vegetative senescence lethal mutant locus in rice.	J Genet Genomics	42(9)	511-4	2015	VSL1	Vsl1, OsVSL1
54086	37112953	Wang F., Song W., Huang C., Wei Z., Li Y., Chen J., Zhang H., Sun Z.	A Rice Receptor-like Protein Negatively Regulates Rice Resistance to Southern Rice Black-Streaked Dwarf Virus Infection.	Viruses	15(4)		2023	GNS6,WRKY64,TIFY9,BAP1,JIOSPR10	Gns6, OsGns6, OsPR2, PR2,OsWRKY64,OsJAZ11, OsJAZ5, OsTIFY9, JAZ11, JAZ5, JAZ11/TIFY9 ,OsBAP1,JIOsPR10, OsPR10, PR10, OsJiPR10, JiPR10, OsPR10c, PR10c
54087	37313323	Li B., Li Y., Qiu M., Dong H., Li X., Liu X., He C., Li L.	OsSRK1, a lectin receptor-like kinase, controls plant height by mediating internode elongation in <i>Oryza sativa L</i>.	Mol. Breed.	42(12)	74	2022	GID1,SRK1	gid1, OsGID1, Thl, Os GID1,OsSRK1
54088	33288007	Verhertbruggen Y., Bouder A., Vigouroux J., Alvarado C., Geairon A., Guillon F., Mark D Wilkinson, Stritt F., Pauly M., Mi Yeon Lee, Jenny C Mortimer, Henrik V Scheller, Rowan A C Mitchell, C&#x103;t&#x103;lin Voiniciuc, Saulnier L., Anne-Laure Chateigner-Boutin	The TaCslA12 gene expressed in the wheat grain endosperm synthesizes wheat-like mannan when expressed in yeast and Arabidopsis.	Plant Sci.	302	110693	2021	CSLA12	OsEnS-131, OsCslA12, OsMnS, MnS
54089	36861636	Lin S., Liu Z., Sun S., Xue F., Li H., Tursun A., Cao L., Zhang L., Zoe A Wilson, Zhang D., Liang W.	Rice HEAT SHOCK PROTEIN60-3B maintains male fertility under high temperature by starch granule biogenesis.	Plant Physiol.	192(3)	2301-2317	2023	HSP60-3B,FLO6	OsHSP60-3B,OsSIP4, SIP4, OsFLO6, OsSFq3, SFq3
54090	37723264		Rice heterosis: quantitatively characterized and optimized hybrid breeding.	Nat. Genet.	55(10)	1619-1620	2023		
54091	37797782	Yan X., Han M., Li S., Liang Z., Ouyang J., Wang X., Liao P.	A member of NF-Y family, OsNF-YC5 negatively regulates salt tolerance in rice.	Gene	892	147869	2023		
54092	37811656	Chun Y., Fang J., Savelieva E.M., Lomin S.N., Shang J., Sun Y., ZHAO J., Kumar A., Yuan S., Yao X.F., Liu C.M., Arkhipov D.V., Romanov G.A., Li X.	The cytokinin receptor OHK4/OsHK4 regulates inflorescence architecture in rice via an IDEAL PLANT ARCHITECTURE1/WFP-mediated positive feedback circuit.	Plant Cell			2023		
54093	37819983	Chen G.E., Wang J.Y., Votta C., Braguy J., Jamil M., Kirschner G.K., Fiorilli V., Berqdar L., Balakrishna A., Blilou I., Lanfranco L., Al-Babili S.	Disruption of the rice <i>4-DEOXYOROBANCHOL HYDROXYLASE</i> unravels specific functions of canonical strigolactones.	Proc. Natl. Acad. Sci. U.S.A.	120(42)	e2306263120	2023		
54094	37839767	Liu X.S., Li H., Feng S.J., Yang Z.M.	A transposable element-derived siRNAs involve DNA hypermethylation at the promoter of OsGSTZ4 for cadmium tolerance in rice.	Gene	892	147900	2023		
54095	37831412	Mou B., Zhao G., Wang J., Wang S., He F., Ning Y., Li D., Zheng X., Cui F., Xue F., Zhang S., Sun W.	The OsCPK17-OsPUB12-OsRLCK176 module regulates immune homeostasis in rice.	Plant Cell			2023		
54096	37877459	Hendrix S.	From the archives: Lignin chemistry and vascular cell capacity, chromosome organization in rice meiosis, and circadian clock setting by imbibition.	Plant Cell			2023		
54097	37882643	Yang L.	Post-translational modifications of OsRLCK176 as a molecular switch to balance growth and immunity in rice.	Plant Cell			2023		
54098	37847118	Zhang B., Xin B., Sun X., Chao D., Zheng H., Peng L., Chen X., Zhang L., Yu J., Ma D., Xia J.	Small peptide signaling via OsCIF1/2 mediates Casparian strip formation at the root endodermal and non-endodermal cell layers in rice.	Plant Cell			2023	SGN3B,CIF1A,CIF2,CIF1B,SGN3A	OsSGN3b, SGN3b,OsCIF1a, CIF1a,OsCIF2,OsCIF1b, CIF1b,OsSGN3a, SGN3a
54099	37866445	Mackon E., Guo Y., Jeazet Dongho Epse Mackon GC., Ma Y., Yao Y., Luo D., Dai X., Zhao N., Lu Y., Jandan T.H., Liu P.	OsGSTU34, a Bz2-like anthocyanin-related glutathione transferase transporter, is essential for rice (Oryza sativa L.) organs coloration.	Phytochemistry	217	113896	2023		
54100	37847093	Wang T., Jin Y., Deng L., Li F., Wang Z., Zhu Y., Wu Y., Qu H., Zhang S., Liu Y., Mei H., Luo L., Yan M., Gu M., Xu G.	The transcription factor MYB110 regulates plant height, lodging resistance, and grain yield in rice.	Plant Cell			2023		
54101	37798878	Xiao N., Wu Y., Zhang X., ZeyunHao, Chen Z., Yang Z., Cai Y., Wang R., Yu L., Wang Z., Lu Y., Shi W., Pan C., Li Y., Zhou C., Liu J., Huang N., Liu G., Ji H., Zhu S., Fang S., Ning Y., Li A.	Pijx confers broad-spectrum seedling and panicle blast resistance by promoting the degradation of ATP &#x3b2; subunit and OsRbohC-mediated ROS burst in rice.	Mol Plant			2023	PIJX	OsPijx
54102	37798654	Chang Z., Wang X., Pan X., Yan W., Wu W., Zhuang Y., Li Z., Wang D., Yuan S., Xu C., Chen Z., Liu D., Chen Z.S., Tang X., Wu J.	The ribosomal protein P0A is required for embryo development in rice.	BMC Plant Biol.	23(1)	465	2023	P0B,P2E,P2D,P2B,P2C,P0C,P0A,P2F,P1,P2A	ARP, OsP0B,OsP2E,OsP2D,OsP2B,OsP2C,OsP0C,YK704, Os60sP0, OsP0A,OsP2F,OsP1,OsP2A
54103	37794842	Meng F., Zheng X., Wang J., Qiu T., Yang Q., Fang K., Bhadauria V., Peng Y.L., Zhao W.	The GRAS protein OsDLA involves in brassinosteroid signalling and positively regulates blast resistance by forming a module with GSK2 and OsWRKY53 in rice.	Plant Biotechnol. J.			2023		
54104	37814022	Wu X., Xie L., Sun X., Wang N., Finnegan E.J., Helliwell C., Yao J., Zhang H., Wu X., Hands P., Lu F., Ma L., Zhou B., Chaudhury A., Cao X., Luo M.	Mutation in Polycomb repressive complex 2 gene OsFIE2 promotes asexual embryo formation in rice.	Nat Plants			2023		
54105	37812600	Hsieh K.T., Wu C.C., Lee S.J., Chen Y.H., Shiue S.Y., Liao Y.C., Liu S.H., Wang I.W., Tseng C.S., Li W.H., Wang C.S., Chen L.J.	Rice GA3ox1 modulates pollen starch granule accumulation and pollen wall development.	PLoS ONE	18(10)	e0292400	2023	GA3OX1,TDR,BHLH142,GAMYB	OsGA3ox1, GA3ox1, OsGA3OX1,tdr, OsbHLH005, bHLH005, OsbHLH5, bhlh5, TDR1, OsTDR, OsTDR1, OsMYC5, MYC5,OsbHLH142, bHLH142, TIP2, OsTIP2, TIP2/TDR/bHLH142,OsGAMYB, GAM1, OsGAMyb, Os-MYBGA, Os GAMYB, OsMYBGA, MYBGA, Os2R_MYB15, 2R_MYB15 
54106	37820910	Cheng M., Yuan H., Wang R., Wang W., Zhang L., Fan F., Li S.	Identification and characterization of BES1 genes involved in grain size.development of Oryza sativa L.	Int. J. Biol. Macromol.	253(Pt 6)	127327	2023		
54107	37818650	Sun X., Xie Y., Xu K., Li J.	Regulatory networks of the F-box protein FBX206 and OVATE family proteins modulate brassinosteroid pathway to regulate grain size.and yield in rice.	J. Exp. Bot.			2023		
54108	37819034	Seo D.H., Jang J., Park D., Yoon Y., Choi Y.D., Jang G.	PEP-ASSOCIATED PROTEIN 3 regulates rice tiller formation and grain yield by controlling chloroplast biogenesis.	Plant Physiol.			2023	PAP3	OsPAP3
54109	37831082	Lam L.P.Y., Tobimatsu Y., Suzuki S., Tanaka T., Yamamoto S., Takeda-Kimura Y., Osakabe Y., Osakabe K., Ralph J., Bartley L.E., Umezawa T.	Disruption of p-Coumaroyl-CoA:monolignol transferases in rice drastically alters lignin composition.	Plant Physiol.			2023		
54110	37916037	Lu X., Zhang D., Zhang Y., Liu X., Wang S., Liu X.	The molybdenum cofactor biosynthesis gene, <i>OsCNX1</i>, is essential for seedling development and seed germination in rice.	Mol. Breed.	43(11)	77	2023		
54111	37913986	Ma B., Cao X., Li X., Bian Z., Zhang Q.Q., Fang Z., Liu J., Li Q., Liu Q., Zhang L., He Z.	Two ABCI family transporters, OsABCI15 and OsABCI16, are involved in grain-filling in rice.	J Genet Genomics			2023		
54112	37874747	Lu J., Jiang Z., Chen J., Xie M., Huang W., Li J., Zhuang C., Liu Z., Zheng S.	SET DOMAIN GROUP 711-mediated H3K27me3 methylation of cytokinin metabolism genes regulates organ size in rice.	Plant Physiol.			2023		
54113	37897041	Gupta A., Liu B., Raza S., Chen Q.J., Yang B.	Modularly assembled multiplex prime editors for simultaneous editing of agronomically important genes in rice.	Plant Commun		100741	2023		
54114	37874376	Liu J., Shen L., Guo L., Zhang G., Gao Z., Zhu L., Hu J., Dong G., Ren D., Zhang Q., Li Q., Zeng D., Yan C., Qian Q.	OsSTS, a Novel Allele of Mitogen-Activated Protein Kinase Kinase 4 (OsMKK4), Controls grain size and salt tolerance in Rice.	Rice (N Y)	16(1)	47	2023	RAB16C,AO3,PP2C1,RAB16B,NHX1,ZFP179,ABI5,LEA3-1,ABCG5,RAB16A,TIFY11A,DHN6,DHN1,ABI1,NCED3,PP2C30,PYL/RCAR7,SMG1	rab21, OsLEA27, rab16C, OsRAB16C, DHD,AO, OsAO, AAO, OsAAO, OsAO3, OsAAO1, AAO1,OsPP2C1, OsSIPP2C1, SIPP2C1, OsPP2C68, PP2C68, OsPP108,rab21, OsLEA28, OsRAB16D, OsRab16d, Rab16d, OsRAB16b, XERO1, OsXERO1, OsRD22, RD22,OsNHX1, OcNHX1, OgNHX1, OrNHX1, OpNHX1, ObNHX1,OsZFP179, DLN27, OsDLN27,OsABI5, OsbZIP10, OsABF1, OREB1, OsABI5-1, OsABI5-2, OsOREB1, OREB1 ,OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3, OsLEA3A, LEA3A,OsABCG5,Rab16A, rab21, RAB21, OsRab21, OsRAB21, OsRAB-21, OsRab16A, OsLEA29, rab16A, OsRAB16A,OsJAZ3, JAZ3, OsJAZ 9, OsJAZ9, Os-JAZ9, JAZ9, OsTIFY11a, OsJAZ6, JAZ6,OsLEA25, LEA25, OsEnS-143, OsRAB21, RAB21, Rab17, OsRab17,LIP9, OsLIP9, lip9, DHN1, DIP1, OsDip1, OsLEA23, OsDhn1, COR410, OsLEA23/DIP1, DIP1/OsLEA23,OsPP2C51, PP2C51, OsPP79, PP79, OsABI1,OSNCED3, OsNCED-3, OsNCED3, OsNCED3a, NCED3a, OsNCED4, NCED4, OsNECD2, OsNCED2b, NCED2b ,OsPP2C30, OsPP48, PP48,OsPYL/RCAR7, OsPYL7, PYL7, OsPYL12,OsMKK4, MKK4, OsMKK4/SMG1, OsMAPKK4, MAPKK4, OsMEK4, MEK4, OsSMG1, SMG1/OsMEK6, OsMEK6, MEK6, OsSTS, STS
54115	37924151	Alhabsi A., Butt H., Kirschner G.K., Blilou I., Mahfouz M.M.	SCR106 splicing factor modulates abiotic stress responses by maintaining the RNA splicing in rice.	J. Exp. Bot.			2023	SCR106	OsSCR106
54116	37924467	Liu Y., Peng X., Ma A., Liu W., Liu B., Yun D.J., Xu Z.Y.	type-B response regulator OsRR22 forms a transcriptional activation complex with OsSLR1 to modulate OsHKT2;1 expression in rice.	Sci China Life Sci			2023		
54117	37884868	Li M., Li W., Zhao M., Li Z., Wang G.L., Liu W., Liang C.	Transcriptome analysis reveals a lncRNA-miRNA-mRNA regulatory network in OsRpp30-mediated disease resistance in rice.	BMC Genomics	24(1)	643	2023	MIR1882H,MIR166K,MIR1882F,CSLA3,EUI1,_,_,MIR1882B,MIR1846A,MSTRG.24461.2,_,MATE2,RA68,HIPP49,NAC15,MIR1882A,CCT36,BZIP68,MIR171D,MIR166L,_,MIR171E,ACO4,MSTRG.4760.1,Os06t0128200-03,_,MSTRG.4676.1,_,MIR1846B,_,MSTRG.16012.6,MSTRG.4506.1,MSTRG.7147.1,MIR1882D,MSTRG.10312.1,MSTRG.17424.2 ,LKR/SDH,PITA,CYP76M8,Os01t0678900-01,MIR1882G,Os05t0475550-00,MIR1882E,MSTRG.4754.1,_,MSTRG.5751.1,ACBP6,TPS1,MIR1882C	miR1882h, osa-miR1882h, osa-MIR1882h,miR166k, osa-miR166kosa-miR166k-3p osa-miR166k-5p,miR1882f, osa-miR1882f, osa-MIR1882f,OsCslA3, OsCSLA3 ,eui1, GA16,17ox, CYP714D1, EUI, CYP714D1/EUI, OsEUI, LG5, OsLG5,LOX,,miR1882b, osa-miR1882b, osa-MIR1882b,miR1846a, osa-miR1846a, osa-MIR1846aosa-miR1846a-5p,,,OsMATE2,OsRA68,OsHIPP49, OsaHIP49, HIP49,OsNAC15, ONAC015, ONAC15, ONAC069, ONAC69,miR1882a, osa-miR1882a, osa-MIR1882a,OsCCT36, OsCMF12, CMF12, OsRpp30, Rpp30,OsbZIP68,miR171d, osa-miR171dosa-miR171d-3p osa-miR171d-5p,miR166l, osa-miR166losa-miR166l-3p osa-miR166l-5p,,miR171e, osa-miR171e, osa-miR171e-3p, osa-miR171e-5p,OsACO4,,,,,,miR1846b, osa-miR1846b, osa-MIR1846bosa-miR1846b-5p,,,,,miR1882d, osa-miR1882d, osa-MIR1882d,,,OsLKR/SDH, OsLKR, OsSDH,Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30, Trx30,OsCYP76M8, OsCYP76-3, CYP76-3,,miR1882g, osa-miR1882g, osa-MIR1882g,,miR1882e, osa-miR1882e, osa-MIR1882e, osa-miR1882e-5p,,,,OsACBP6,OsTPS1,miR1882c, osa-miR1882c, osa-MIR1882c
54118	37924628	Chen R., Luo L., Li K., Li Q., Li W., Wang X.	Dormancy-Associated Gene 1 (OsDRM1) as an axillary bud dormancy marker: Retarding Plant Development, and Modulating Auxin Response in&#xa0;Rice (Oryza sativa L.).	J. Plant Physiol.	291	154117	2023	ARP1	OsARP1, OsDRM1, DRM1
54119	37862164	You X., Zhu S., Sheng H., Liu Z., Wang D., Wang M., Xu X., He F., Fang H., Zhang F., Wang D., Hao Z., Wang R., Xiao Y., Wan J., Wang G.L., Ning Y.	The rice peroxisomal receptor PEX5 negatively regulates resistance to rice blast fungus Magnaporthe oryzae.	Cell Rep	42(10)	113315	2023		
54120	37907655	Li D., Liu K., Zhao C., Liang S., Yang J., Peng Z., Xia A., Yang M., Luo L., Huang C., Wang J., Huang M., Xiao W., Wang H., Su L., Guo T.	GWAS Combined with WGCNA of Transcriptome and Metabolome to Excavate Key Candidate Genes for Rice Anaerobic Germination.	Rice (N Y)	16(1)	49	2023	ALAAT,_	alaAT, ALT-1, OsAlaAT1, AlaAT1,GDCi, OsGDCi, OsGAD, GAD, OsGAD4, GAD4
54121	37902786	Lim C., Kim Y., Shim Y., Cho S.H., Yang T.J., Song Y.H., Kang K., Paek N.C.	Rice OsGATA16 is a positive regulator for chlorophyll biosynthesis and chloroplast development.	Plant J.			2023		
54122	37880207	Zu X., Luo L., Wang Z., Gong J., Yang C., Wang Y., Xu C., Qiao X., Deng X., Song X., Chen C., Tan B.C., Cao X.	A mitochondrial pentatricopeptide repeat protein enhances cold tolerance by modulating mitochondrial superoxide in rice.	Nat Commun	14(1)	6789	2023	NAD6,TCD3,SOP10,SODB,NAD4,NAD2,NAD5,SODCC2,SODA1,RPS4	nad6,OsTCD3, OsPUS1, PUS1,OsSOP10,SodB, Fe-SOD, Fe- SOD, OsFe-SOD, Fe+-SOD, OsFe+-SOD, OsFe-SODa, OsFe-SODb, OsFeSODb, FeSODb, OsFSD1.2, FSD1.2, FeSOD2, OsFSD2, FSD2, OsFSD1, FSD1, ALM1, OsALM1,nad4, nadIV,nad2, OsNAD2,nad5, OsNAD5,Cu/Zn-SOD, Cu/Zn- SOD, OsCu-ZnSOD2, Cu-ZnSOD2, OsSODB, OsSOD3, SodCc2, Os SodCc2, sodB, OsSodB, RSODB, OssodCc1, OsCSD1.1, CSD1.1, OsCDS1, OsSOD3-CU/Zn, SOD3-CU/Zn, CuZnSOD2, Cu/ZnSOD2, OsCu/ZnSOD2, OsCSD1, CSD1, CuZnSOD1, OsCuZnSOD2, OsCSD4, CSD4, OsCSD3, CSD3, Cu/Zn-SOD3,SodA1, OsSODA1, Mn-SOD, Mn- SOD, OsMSD, MnSOD, OsMnSOD, MnSOD1, OsMnSOD1,rps4
54123	37843487	Singh D., Banerjee G., Verma N., Sinha A.K.	MAP kinases may mediate regulation of the cell cycle in rice by E2F2 phosphorylation.	FEBS Lett.			2023		
54124	37862261	Li L., Li J., Liu K., Jiang C., Jin W., Ye J., Qin T., Luo B., Chen Z., Li J., Lv F., Li X., Wang H., Jin J., Deng Q., Wang S., Zhu J., Zou T., Liu H., Li S., Li P., Liang Y.	dgw1, encoding an hnRNP-like RNA binding protein, positively regulates grain size.and weight by interacting with GW6 mRNA.	Plant Biotechnol. J.			2023		
54125	37853334	Hu Z., Guo Y., Ying S., Tang Y., Niu J., Wang T., Huang R., Xie H., Wang W., Peng X.	OsCBL1 modulates rice nitrogen use efficiency via negative regulation of OsNRT2.2 by OsCCA1.	BMC Plant Biol.	23(1)	502	2023	NRT2.2,CBL1,CCA1	OsNRT2.2, OsNRT2.1,OsCBL1, Os-CBL1,OsCCA1, OsLHY, LHY, LHY-like_chr.8, COC1, DLN203, OsDLN203, LEM1, OsLEM1, Nhd1, OsNhd1
54126	37843127	Liu J., Tong L., Zhang X., Zhang H., Tao B., Gong Q., Zeng R., Song Y.	Dynamic nitrogen reallocation in rice plants upon insect herbivory by a generalist lepidopteran pest Spodoptera litura (Fabricius).	Plant Cell Environ.			2023		
54127	37845836	Wu J., Sun L.Q., Song Y., Bai Y., Wan G.Y., Wang J.X., Xia J.Q., Zhang Z.Y., Zhang Z.S., Zhao Z., Xiang C.B.	The OsNLP3/4-OsRFL module regulates nitrogen-promoted panicle architecture in rice.	New Phytol.			2023		
54128	37798132	Duan A., Liu R., Liu C., Wu F., Su H., Zhou S., Huang M., Tian X., Jia H., Liu Y., Li M., Du H.	SAB23 Encodes a PHD-Type Transcription Factor whose Mutation Confers submergence tolerance in Rice.	J. Exp. Bot.			2023	SAB23	OsSAB23
54129	37794682	Yuan K., Zhang H., Yu C., Luo N., Yan J., Zheng S., Hu Q., Zhang D., Kou L., Meng X., Jing Y., Chen M., Ban X., Yan Z., Lu Z., Wu J., Zhao Y., Liang Y., Wang Y., Xiong G., Chu J., Wang E., Li J., Wang B.	Low phosphorus promotes NSP1-NSP2 heterodimerization to enhance strigolactone biosynthesis and regulate shoot and root architectures in rice.	Mol Plant			2023		
54130	37783812	Tiozon R.J.N., Sreenivasulu N., Alseekh S., Sartagoda K.J.D., Usadel B., Fernie A.R.	Metabolomics and machine learning technique revealed that germination enhances the multi-nutritional properties of pigmented rice.	Commun Biol	6(1)	1000	2023		
54131	37789685	Xiao W., Hu S., Yu K., Li Y., Cai R., Xie D., Zhou H., Guo Z., Liu S., Zou X., Ye S., Guo A., Yao R., Zhao H., Guo X.	Fine-tuning of MPK6/3 phosphorylation by a lectin receptor-like kinase LecRK-VIII.2 regulates seed development.	Plant Biotechnol. J.			2023	LECRK-VIII.2	OsLecRK-VIII.2, LecRK-VIII.2
54132	37834285	Shen S., Xu S., Wang M., Ma T., Chen N., Wang J., Zheng H., Yang L., Zou D., Xin W., Liu H.	BSA-Seq for the Identification of Major Genes for EPN in Rice.	Int J Mol Sci	24(19)		2023		
54133	37812280	Cai X., Chen Y., Wang Y., Shen Y., Yang J., Jia B., Sun X., Sun M.	A comprehensive investigation of the regulatory roles of OsERF096, an AP2/ERF transcription factor, in rice cold stress response.	Plant Cell Rep.			2023		
54134	37836236	Liang C., Li Y., Zhang K., Wu Z., Liu J., Liu J., Zhou C., Wang S., Li F., Sui G.	Selection and Yield Formation Characteristics of Dry Direct Seeding Rice in Northeast China.	Plants (Basel)	12(19)		2023		
54135	37813192	Zhu P., Zhong Y., Luo L., Shen J., Sun J., Li L., Cheng L., Gui J.	The MPK6-LTF1L1 module regulates lignin biosynthesis in rice through a distinct mechanism from Populus LTF1.	Plant Sci.		111890	2023		
54136	37804355	Qiu R., Liu Y., Cai Z., Li J., Wu C., Wang G., Lin C., Peng Y., Deng Z., Tang W., Wu W., Duan Y.	Glucan Synthase-like 2&#xa0;is Required for Seed Initiation and Filling as Well as pollen Fertility in Rice.	Rice (N Y)	16(1)	44	2023		
54137	37813193	Kurowska M., Daszkowska-Golec A.	Molecular mechanisms of SNAC1 (Stress-responsive NAC1) in conferring the abiotic stress tolerance.	Plant Sci.	337	111894	2023		
54138	37832368	Banerjee G., Singh D., Pandey C., Jonwal S., Basu U., Parida S.K., Pandey A., Sinha A.K.	Rice Mitogen-Activated Protein Kinase regulates serotonin accumulation and interacts with cell cycle regulators under prolonged UV-B exposure.	Plant Physiol. Biochem.	203	108078	2023	SMR1	OsSMR1
54139	37837754	Zhao F., Ma Q., Li Y., Jiang M., Zhou Z., Meng S., Peng Y., Zhang J., Ye N., Liu B.	OsNAC2 regulates seed dormancy and germination in rice by inhibiting ABA catabolism.	Biochem. Biophys. Res. Commun.	682	335-342	2023		
54140	37807096	Oliveira-Garcia E., Budot B.O., Manangkil J., Dalla Lana F., Angira B., Famoso A., Jia Y.	An efficient method for screening rice breeding lines against races of Magnaporthe oryzae.	Plant Dis.			2023		
54141	37819387	Lu L., Sun Z., Wang R., Du Y., Zhang Z., Lan T., Song Y., Zeng R.	Integration of transcriptome and metabolome analyses reveals the role of OsSPL10 in rice defense against brown planthopper.	Plant Cell Rep.			2023		
54142	37828741	Xia J.Q., Liang Q.Y., He D.Y., Zhang Z.Y., Wu J., Zhang J., Zhao P.X., Zhang Z.S., Xiang C.B.	Knockout of OsSPL10 confers enhanced glufosinate resistance in rice.	Plant Commun		100731	2023		
54143	37831291	Xu S., Fei Y., Wang Y., Zhao W., Hou L., Cao Y., Wu M., Wu H.	Identification of a Seed Vigor-Related QTL Cluster Associated with Weed Competitive Ability in Direct-Seeded Rice (Oryza Sativa L.).	Rice (N Y)	16(1)	45	2023		
54144	37839192	Sun X., Wang J., Zhang M., Liu Z., E Y., Meng J., He T.	Combined application of biochar and sulfur alleviates cadmium toxicity in rice by affecting root gene expression and iron plaque accumulation.	Ecotoxicol. Environ. Saf.	266	115596	2023		
54145	37831077	Yamauchi T., Tanaka A., Nakazono M., Inukai Y.	Age-dependent analysis dissects the stepwise control of auxin-mediated lateral root development in rice.	Plant Physiol.			2023		
54146	37895481	Luo H., Wang Q., Dong C., Shi Z., He C., Guo Z., Shi J., Li C., Gao W., Li J.	Establishment of Functional PCR-Based Markers against Bacterial Leaf Blight Disease in Rice Landraces of Yunnan Province of China.	Life (Basel)	13(10)		2023		
54147	37902192	Zhao G., Liu Y., Li L., Che R., Douglass M., Benza K., Angove M., Luo K., Hu Q., Chen X., Henry C., Li Z., Ning G., Luo H.	Gene pyramiding for boosted plant growth and broad abiotic stress tolerance.	Plant Biotechnol. J.			2023		
54148	37907574	Biswas B., Thakur K., Pote T.D., Sharma K.D., Krishnan S.G., Singh A.K., Sharma T.R., Rathour R.	Genetic and molecular analysis of leaf blast resistance in Tetep derived line RIL4 and its relationship to genes at Pita/Pita2 locus.	Sci Rep	13(1)	18683	2023		
54149	37884653	Zhang X.Y., Tang L.H., Nie J.W., Zhang C.R., Han X., Li Q.Y., Qin L., Wang M.H., Huang X., Yu F., Su M., Wang Y., Xu R.M., Guo Y., Xie Q., Chen Y.H.	Structure and activation mechanism of the rice Salt Overly Sensitive 1 (SOS1) Na+/H+ antiporter.	Nat Plants			2023		
54150	37884965	Wu J.R., Zohra R., Duong N.K.T., Yeh C.H., Lu C.A., Wu S.J.	A plant protein farnesylation system in prokaryotic cells reveals Arabidopsis AtJ3 produced and farnesylated in E. coli maintains its function of protecting proteins from heat inactivation.	Plant Methods	19(1)	113	2023		
54151	37913987	Song Y., Yang H., Zhu W., Wang H., Zhang J., Li Y.	The Os14-3-3 family genes regulate grain size in rice.	J Genet Genomics			2023		
54152	37929886	Soma F., Kitomi Y., Kawakatsu T., Uga Y.	Life-cycle multiomics of rice shoots reveals growth stage-specific effects of drought stress and time-lag drought responses.	Plant Cell Physiol.			2023		
54153	37897891	Mirza Z., Jonwal S., Saini H., Sinha A.K., Gupta M.	Unraveling the molecular aspects of iron-mediated OsWRKY76 signaling under arsenic stress in rice.	Plant Physiol. Biochem.	204	108136	2023		
54154	37896118	Mollier M., Roychowdhury R., Tzudir L., Sharma R., Barua U., Rahman N., Pal S., Gogoi B., Kalita P., Jain D., Das R.	Evaluation of Morpho-Physiological and Yield-Associated Traits of Rice (<i>Oryza sativa</i> L.) Landraces Combined with Marker-Assisted Selection under High-Temperature Stress and Elevated Atmospheric CO2 Levels.	Plants (Basel)	12(20)		2023		
54155	37890244	Jiang D., Gao W., Chen G.	Toxic effects of lanthanum(III) on photosynthetic performance of rice seedlings: Combined chlorophyll fluorescence, chloroplast structure and thylakoid membrane protein assessment.	Ecotoxicol. Environ. Saf.	267	115627	2023		
54156	37902589	Zhang D., Lin R., Yamamoto N., Wang Z., Lin H., Okada K., Liu Y., Xiang X., Zheng T., Zheng H., Yi X., Noutoshi Y., Zheng A.	Mitochondrial-targeting effector RsIA_CtaG/Cox11 in Rhizoctonia solani AG-1 IA has two functions: plant immunity suppression and cell death induction mediated by a rice cytochrome c oxidase subunit.	Mol. Plant Pathol.			2023		
54157	37908121	Huang C., Zhao J., Huang Q., Peng L., Huang Z., Li W., Sun S., He Y., Wang Z.	OsNAC3 regulates seed germination involving abscisic acid pathway and cell elongation in rice.	New Phytol.			2023		
54158	37890228	Yang J., Miao J., Li N., Zhou Z., Dai K., Ji F., Yang M., Tan C., Liu J., Wang H., Tang W.	Genetic dissection of cold tolerance at the budding stage of rice in an indica-japonica recombination inbred line population.	Plant Physiol. Biochem.	204	108086	2023		
54159	37874341	Prasanna J.A., Mandal V.K., Kumar D., Chakraborty N., Raghuram N.	Nitrate-responsive transcriptome analysis of rice RGA1 mutant reveals the role of G-protein&#xa0;alpha subunit in negative regulation of nitrogen-sensitivity and use efficiency.	Plant Cell Rep.			2023		
54160	37907025	Chen J., Jin Z., Xiang L., Chen Y., Zhang J., Zhao J., Huang F., Shi Y., Cheng F., Pan G.	Ethanol suppresses rice seed germination through inhibiting ROS signaling.	J. Plant Physiol.	291	154123	2023		
54161	37896063	Khan M.A.R., Mahmud A., Ghosh U.K., Hossain M.S., Siddiqui M.N., Islam AKMA., Anik T.R., Rahman M.M., Sharma A., Abdelrahman M., Ha C.V., Mostofa M.G., Tran L.P.	Exploring the Phenotypic and Genetic Variabilities in Yield and Yield-Related Traits of the Diallel-Crossed F5 Population of Aus Rice.	Plants (Basel)	12(20)		2023		
54162	37861465	Li X., Zhang S., Lowey D., Hissam C., Clevenger J., Perera S., Jia Y., Caicedo A.L.	A derived weedy rice &#xd7; ancestral cultivar cross identifies evolutionarily relevant weediness QTLs.	Mol. Ecol.	32(22)	5971-5985	2023		
54163	37896091	Yuan Y., Khourchi S., Li S., Du Y., Delaplace P.	Unlocking the Multifaceted Mechanisms of Bud Outgrowth: Advances in Understanding shoot branching.	Plants (Basel)	12(20)		2023		
54164	37851149	Sun K., Zong W., Xiao D., Wu Z., Guo X., Li F., Song Y., Li S., Wei G., Hao Y., Xu B., Li W., Lin Z., Xie W., Liu Y.G., Guo J.	Effects of the core heading date genes Hd1, Ghd7, DTH8, and PRR37 on yield-related traits in rice.	Theor. Appl. Genet.	136(11)	227	2023		
54165	37892236	Habibpourmehraban F., Masoomi-Aladizgeh F., Haynes P.A.	Effect of ABA Pre-Treatment on Rice Plant Transcriptome Response to Multiple Abiotic Stress.	Biomolecules	13(10)		2023		
54166	37885707	Salinas T.A.O., Natividad M.T., Palisoc S.T.	Determination of heavy metals in rice (Oryza sativa L.) and soil using AuNP/BiNP/MWCNT/Nafion modified glassy carbon electrode.	Heliyon	9(11)	e21271	2023		
54167	37847396	Wang Y., Liang X., Gong G., Zhang G., Zhao H., Zheng Z., Wang C., Zhu H., Huang J., Li Z., Bu S., Liu G., Wang S., Liu Z.	qGLF5 from Oryza rufipogon Griff. improves kernel shape, plant architecture, and yield in rice.	Theor. Appl. Genet.	136(11)	225	2023		
54168	37848638	Sandhu N., Ankush A.P., Singh J., Raigar O.P., Bains S., Jindal T., Singh M.P., Sethi M., Pruthi G., Augustine G., Verma V.K., Goyal S., Kumar A., Panwar H., Sihag M.K., Kaur R., Kurup S., Kumar A.	Integrating Association Mapping, Linkage Mapping, Fine Mapping with RNA Seq Conferring Seedling Vigor Improvement for Successful Crop Establishment in Deep Sown Direct-Seeded Rice.	Rice (N Y)	16(1)	46	2023		
54169	37853691	Yao Y., Xiang D., Wu N., Wang Y., Chen Y., Yuan Y., Ye Y., Hu D., Zheng C., Yan Y., Lv Q., Li X., Chen G., Hu H., Xiong H., Peng S., Xiong L.	Control of rice ratooning ability by a nucleoredoxin that inhibits histidine kinase dimerization to attenuate cytokinin signaling in axillary bud growth.	Mol Plant			2023	RRA3	OsRRA3
54170	37794325	Adam H., Guti&#xe9;rrez A., Couderc M., Sabot F., Ntakirutimana F., Serret J., Orjuela J., Tregear J., Jouannic S., Lorieux M.	Genomic introgressions from African rice (Oryza glaberrima) in Asian rice (O. sativa) lead to the identification of key QTLs for panicle architecture.	BMC Genomics	24(1)	587	2023		
54171	37788677	Chen L., Liu R., Tan Q., Luo H., Chen Y., Jin Y., Zheng Z., Zhang B., Guo D.	Improving the Herbicide Resistance of Rice 4-Hydroxyphenylpyruvate Dioxygenase by DNA Shuffling Basis-Directed Evolution.	J. Agric. Food Chem.			2023		
54172	37834281	Cai W., Li W., Duan L., Chen Y., Zhang F., Hu B., Xie J.	Genetic Analysis of Novel Fertility Restoration Genes (<i>qRf3</i> and <i>qRf6</i>) in Dongxiang Wild Rice Using GradedPool-Seq Mapping and QTL-Seq Correlation Analysis.	Int J Mol Sci	24(19)		2023		
54173	37798338	Huang Y., Ji Z., Tao Y., Wei S., Jiao W., Fang Y., Jian P., Shen C., Qin Y., Zhang S., Li S., Liu X., Kang S., Tian Y., Song Q., Harberd N.P., Wang S., Li S.	Improving rice nitrogen-use efficiency by modulating a novel monouniquitination machinery for optimal root plasticity response to nitrogen.	Nat Plants			2023	RNR10	OsRNR10
54174	37801619	Xu R., Liu Z., Wang X., Zhou Y., Zhang B.	Xylan clustering on the pollen surface is required for exine patterning.	Plant Physiol.			2023		
54175	37822083	Lv P., Su F., Chen F., Yan C., Xia D., Sun H., Li S., Duan Z., Ma C., Zhang H., Wang M., Niu X., Zhu J.K., Zhang J.	Genome editing in rice using CRISPR/Cas12i3.	Plant Biotechnol. J.			2023		
54176	37819494	Tamizi A.A., Md-Yusof AA., Mohd-Zim NA., Nazaruddin N.H., Sekeli R., Zainuddin Z., Samsulrizal N.H.	Agrobacterium-mediated in planta transformation of cut coleoptile: a new, simplified, and tissue culture-independent method to deliver the CRISPR/Cas9 system in rice.	Mol. Biol. Rep.			2023		
54177	37833626	Eragam A., Mohapatra A., Shukla V., Kadumuri R.V., George A.P., Putta L., Akkareddy S., Chavali S., Vemireddy L.R., Ramireddy E.	Panicle transcriptome of high-yield mutant indica rice reveals physiological mechanisms and novel candidate regulatory genes for yield under reproductive stage drought stress.	BMC Plant Biol.	23(1)	493	2023		
54178	37905821	Su X.N., Liu X.S., Li C.Y., Zhang Y.P.	Cytochrome P450 CYP90D5 Enhances Degradation of the Herbicides Isoproturon and Acetochlor in Rice Plants and Grains.	J. Agric. Food Chem.			2023	CYP90D5	OsCYP90D5
54179	37898431	Feng Y.X., Tian P., Lin Y.J., Cao D.Y., Li C.Z., Ullah A.	Gaseous signaling molecule H2S as a multitasking signal molecule in ROS metabolism of Oryza sativa under thiocyanate (SCN-) pollution.	Environ. Pollut.	340(Pt 2)	122816	2023		
54180	37884634	Bhattacharjee B., Ali A., Rangappa K., Choudhury B.U., Mishra V.K.	A detailed study on genetic diversity, antioxidant machinery, and expression profile of drought-responsive genes in rice genotypes exposed to artificial osmotic stress.	Sci Rep	13(1)	18388	2023		
54181	37878087	Sedah P., Djedatin L.G., Loko L.Y.E., Ewedje E.B.K., Orobiyi A., Gbemavo CDSJ., Toffa J., Tchakpa C., Cubry P., Sabot F.	Impact of Seed Origin and Genetic Drift of Improved Rice Variety IR841 in Benin.	Rice (N Y)	16(1)	48	2023		
54182	37857615	Mitani-Ueno N., Yamaji N., Huang S., Yoshioka Y., Miyaji T., Ma J.F.	A silicon transporter gene required for healthy growth of rice on land.	Nat Commun	14(1)	6522	2023	Z3	OsZ3, z3, SIET4, OsSIET4
54183	37850886	Li X., Li J., Wei S., Gao Y., Pei H., Geng R., Lu Z., Wang P., Zhou W.	Maize GOLDEN2-LIKE proteins enhance drought tolerance in rice by promoting stomatal closure.	Plant Physiol.			2023		
54184	37843097	Wang T., He W., Li X., Zhang C., He H., Yuan Q., Zhang B., Zhang H., Leng Y., Wei H., Xu Q., Shi C., Liu X., Guo M., Wang X., Chen W., Zhang Z., Yang L., Lv Y., Qian H., Zhang B., Yu X., Liu C., Cao X., Cui Y., Zhang Q., Dai X., Guo L., Wang Y., Zhou Y., Ruan J., Qian Q., Shang L.	A rice variation map derived from 10 548 rice accessions reveals the importance of rare variants.	Nucleic Acids Res.			2023		
54185	37850120	Teng Z., Chen J., Wang J., Wu S., Chen R., Lin Y., Shen L., Jackson R., Zhou J., Yang C.	Panicle-Cloud: An Open and AI-Powered Cloud Computing Platform for Quantifying Rice Panicles from Drone-Collected Imagery to Enable the Classification of Yield Production in Rice.	Plant Phenomics	5	0105	2023		
54186	37849024	He Z., Li M., Pan X., Peng Y., Shi Y., Han Q., Shi M., She L., Borovskii G., Chen X., Gu X., Cheng X., Zhang W.	R-loops act as regulatory switches modulating transcription of COLD-responsive genes in rice.	New Phytol.			2023		
54187	0	Guo J., Chen R, Du B., Zhu L., He G.	Progress in exploitation and utilization of brown planthopper resistance gene in rice.	Sci. Sin. Vitae	52	1326-1334	2022	BPH15	RLCK134, OsRLCK134, OsLecRK1, LecRK1, SDRLK-LecRK1, OsSDRLK-LecRK1, OslecRK, lecRK, Bph15, OsBph15, Bph15 (Qbp2), Qbp2, qBPH-4
54188	0	Hu J., Li X., Wu C., Yang C., Hua H., Gao G., Xiao J., He Y.	Pyramiding and evaluation of the brown planthopper resistance genes Bph14 and Bph15 in hybrid rice	Molecular Breeding	29	61-69	2012	BPH14,BPH15	Bph14 (Qbp1), Bph14, Qbp1, qBPH-3,RLCK134, OsRLCK134, OsLecRK1, LecRK1, SDRLK-LecRK1, OsSDRLK-LecRK1, OslecRK, lecRK, Bph15, OsBph15, Bph15 (Qbp2), Qbp2, qBPH-4
54189	0	T. T. Phan T., Ishibashi Y., Miyazaki M., T. Tran H., Okamura K., Tanaka S., Nakamura J., Yuasa T., Iwaya-Inoue M.	High Temperature-Induced Repression of the Rice Sucrose Transporter (OsSUT1) and Starch Synthesis-Related Genes in Sink and Source Organs at Milky Ripening Stage Causes Chalky Grains	Journal of Agronomy and Crop Science	199(3)	178-188	2012	SUT1	OsSUT1, OsSUT2
54190	37681196	Nishizawa-Yokoi A., Gelvin S.B.	Transformation and regeneration of DNA polymerase &#x398; mutant rice plants.	Plant Direct	7(9)	e526	2023	POLQ	PolQ, OsPolQ
54191	0	WANG Xing-Chun, WANG Min, JI Zhi-Juan, CHEN Zhao, LIU Wen-Zhen, HAN Yuan-Huai, YANG Chang-Deng	Functional Characterization of the Glycoside Hydrolase Encoding Gene osbe1 during Chloroplast Development in Oryza sativa	Acta Agron Sin	12	2090 -2097	2014	BE1	OsBE1
54192	0	Li S., Zhou J., Xiang S., Wei S.	UVI_02019870, a Puptive Effector from Ustilaginoidea virens, Interacts with a Chloroplastic-Like Protein OsCPL1	Phyton-International Journal of Experimental Botany	89(3)	681-690	2020	PC	OsPC, PetE, OsPETE, OsCPL1, CPL1
54193	38325666	Li Z., Gao J., Wang B., Zhang H., Tian Y., Peng R., Yao Q.	Ectopic expression of an Old Yellow Enzyme (OYE3) gene from Saccharomyces cerevisiae increases the tolerance and phytoremediation of 2-nitroaniline in rice.	Gene	906	148239	2024		
54194	38366568	Molla K.A.	A trick for a treat: False smut pathogen manipulates plant defense to gain access to rice flower.	Plant Cell			2024		
54195	38345423	Zhong Y., Luo Y., Sun J., Qin X., Gan P., Zhou Z., Qian Y., Zhao R., Zhao Z., Cai W., Luo J., Chen L.L., Song J.M.	Pan-transcriptomic analysis reveals alternative splicing control of cold tolerance in rice.	Plant Cell			2024		
54196	38416876	Zhang G., Wang H., Ren X., Xiao Y., Liu D., Meng W., Qiu Y., Hu B., Xie Q., Chu C., Tong H.	Brassinosteroid-dependent phosphorylation of PHOSPHATE STARVATION RESPONSE2 reduces its DNA-binding ability in rice.	Plant Cell			2024		
54197	38412122	Rieu P., Beretta V.M., Caselli F., Th&#xe9;v&#xe9;non E., Lucas J., Rizk M., Franchini E., Caporali E., Paleni C., Nanao M.H., Kater M.M., Dumas R., Zubieta C., Parcy F., Gregis V.	The ALOG domain defines a family of plant-specific transcription factors acting during Arabidopsis flower development.	Proc. Natl. Acad. Sci. U.S.A.	121(10)	e2310464121	2024		
54198	38498461	Hao B., Zhang R., Zhang C., Wen N., Xia Y., Zhao Y., Li Q., Qiao L., Li W.	Characterization of <i>OsPIN2</i> Mutants Reveal Novel Roles for Reactive Oxygen Species in Modulating Not Only Root Gravitropism but Also Hypoxia Tolerance in Rice Seedlings.	Plants (Basel)	13(4)		2024	LRA1,GLO6,SUB1C	OsPIN2, PIN2, OsLRA1, WAR1, OsWAR1,GLO6, OsGLO6, OsGOX6, GOX6,Sub1C, OsSUB1C, OsERF#073, OsERF073, ERF073, OsERF73, ERF73, AP2/EREBP#122, AP2/EREBP122, SUB1B
54199	38311858	Liu J., Zhang J., Wei Y., Su W., Li W., Wang B., Peng D., Gheysen G., Peng H., Dai L.	The nematode effector calreticulin competes with the high mobility group protein OsHMGB1 for binding to the rice calmodulin-like protein OsCML31 to enhance rice susceptibility to Meloidogyne graminicola.	Plant Cell Environ.	47(5)	1732-1746	2024		
54200	38323734	Carvalho P., Gomes C., Gon&#xe7;alves I., Louren&#xe7;o TF., Vlad D., Langdale J.A., Saibo N.J.M.	The bHLH transcription factor OsPRI1 activates the Setaria viridis&#xa0;PEPC1 promoter in rice.	New Phytol.	241(6)	2495-2505	2024		
54201	38302786	Chapagain S., Pruthi R., Singh L., Subudhi P.K.	Comparison of the genetic basis of salt tolerance at germination, seedling, and reproductive stages in an introgression line population of rice.	Mol. Biol. Rep.	51(1)	252	2024		
54202	38337086	Bao H., Cui Y., Ge L., Li Y., Xu X., Tang M., Yi Y., Chen L.	OsGEX3 affects anther development and improves osmotic stress tolerance in rice.	Planta	259(3)	68	2024	GEX3	OsGEX3
54203	38330080	Tan X., Wang G., Cao C., Yang Z., Zhang H., Li Y., Wei Z., Chen J., Sun Z.	Two different viral proteins suppress NUCLEAR FACTOR-YC-mediated antiviral immunity during infection in rice.	Plant Physiol.			2024		
54204	37656054	Huang X., Wang J., Chen S., Liu S., Li Z., Wang Z., Chen B., Zhang C., Zhang Y., Wu J., Yang X., Xie Q., Li F., An H., Huang J., Li H., Liu C., Wu X., Liu D.X., Yang X., Zhou G., Zhang T.	Rhabdovirus encoded glycoprotein induces and harnesses host antiviral autophagy for maintaining its compatible infection.	Autophagy	20(2)	275-294	2024		
54205	38396836	Chen G., Lian W., Geng A., Wang Y., Liu M., Zhang Y., Wang X.	<i>pOsHAK1:OsSUT1</i> Promotes Sugar Transport and Enhances drought tolerance in Rice.	Int J Mol Sci	25(4)		2024	HSA1,SUT1,BZIP23,SGR,CATB,NAC6	OsHSA1, OsFLN2, FLN2, HSA1/OsFLN2,OsSUT1, OsSUT2,OsbZIP23, OsAREB1, OsABF2, Osbzip23, OsAREB2, OsZIP23, ZIP23,sgr(t), sgr, OsSGR, OsSgr, SGR1, OsSGR1,CatB, CAT-B, OsCatB, OsCATB, OsCAT1B, CAT1B, CAT2, OsCAT2,OsNAC6, ONAC048, NAC48, SNAC2, SNAC2/OsNAC6, OsNAC6/ONAC048, OsSNAC2, SNAC-2, OsSNAC-2, OsNAC2
54206	38324953	He Y., Lu C., Jiang Z., Sun Y., Liu H., Yin Z.	NADH dehydrogenase-like complex L subunit improves salt tolerance by enhancing photosynthetic electron transport.	Plant Physiol. Biochem.	207	108420	2024	NDHL	OsNdhl
54207	38339152	Wang X., Wang Z., Lu Y., Huang J., Hu Z., Lou J., Fan X., Gu Z., Liu P., Ma B., Chen X.	OsACA9, an Autoinhibited Ca2+-ATPase, Synergically Regulates disease resistance and leaf senescence in Rice.	Int J Mol Sci	25(3)		2024	_,WAK29,RLCK354,WAK46,_,EXS,ACA9,_	OsRLCK17, RLCK17,OsWAK29,OsRLCK354, OsRLCK355, RLCK355,OsWAK46, OsWAK2-L, WAK2-L, OsWAK2L, WAK2L,OsRLCK18, RLCK18,OsEXS, OsRLCK354, RLCK354,osACA9, OsACA2, ACA2, OsPM2ATP9,OsRLCK9, RLCK9
54208	37935444	Zhu J., Li J., Hu X., Wang J., Fang J., Wang S., Shou H.	Role of transcription factor complex OsbHLH156-OsIRO2 in regulating manganese, copper, and zinc transporters in rice.	J. Exp. Bot.	75(3)	1112-1127	2024		
54209	38465246	Yemelyanov V.V., Prikaziuk E.G., Lastochkin V.V., Aresheva O.M., Chirkova T.V.	Ascorbate-glutathione cycle in wheat and rice seedlings under anoxia and subsequent reaeration.	Vavilovskii Zhurnal Genet Selektsii	28(1)	44-54	2024	APX4,APX5,GR2,GR3,APX7,APX1,APX3,APX8,MDHAR2,APX2,MDHAR4	OsAPx4, OsAPx04, OSAPX4, APx4, pAPX4,OsAPx5, OsAPx05, OSAPX5, APx5,OsGR2, RGRC2, OsGR, OsGR3, OsRGRC2,OsGR3,OsAPx7, OsAPx07, OSAPX7, APx7, sAPX,OsAPX1, APXa, OsAPXa, OsAPx01, OsAPx1, OSAPX1, APx1, cAPX, APX2, cAPXa, OscAPXa,OsAPx3, OsAPx03, OSAPX3, APx3, mAPX,OsAPx8, OsAPx08, OSAPX8, APx8, OsAPX8,OsMDAR2, OsMDHAR2, MDAR2, OsMDHAR4, MDHAR4,OsAPX2, OsAPx02, APXb, OsAPx2, OSAPX2, APx2, cAPX, OsAPX1, APX1,OsMDAR4, MDAR4, OsMDHAR4
54210	38650829	Wei H., Wang X., Zhang Z., Yang L., Zhang Q., Li Y., He H., Chen D., Zhang B., Zheng C., Leng Y., Cao X., Cui Y., Shi C., Liu Y., Lv Y., Ma J., He W., Liu X., Xu Q., Yuan Q., Yu X., Wang T., Qian H., Li X., Zhang B., Zhang H., Chen W., Guo M., Dai X., Wang Y., Zheng X., Guo L., Xie X., Qian Q., Shang L.	Uncovering key salt-tolerant regulators through a combined eQTL and GWAS analysis using the super pan-genome in rice.	Natl Sci Rev	11(4)	nwae043	2024	HKT6,RPH1,HKT7,HKT3,SKC1,HKT4,HKT1,HKT9	OsHKT6, OsHKT1;3, HKT1;3, OsHKT1;3_FL, OsHKT1;3_V1, OsHKT1;3_V2, OsHKT1;3_V3, OsHKT1;3_V4, OsHKT1;3_V5,OsERF#052, OsERF052, OsERF52, ERF52, AP2/EREBP#053, AP2/EREBP53, OsRPH1, STG5, OsSTG5,OsHKT7, OsHKT1;4, HKT1;4,OsHKT3, OsHKT2;3, HKT2;3,OsHKT8, HKT8, Os-HKT1;5, OsHKT1;5, HKT1;5, SKC1, qSKC-1(t), OsSKC1,OsHKT4, OsHKT1;1, HKT1;1, OsHKT2, RNC4, OsHKT1;1-FL, OsHKT1;1-V1, OsHKT1;1-V2, OsHKT1;1-V3, OsHKT1;1-V4, OsHKT1;1-V5, OsHKT1;1-V6, OsHKT1;1-V7, OsHKT1;1-V8,OsHKT1, OsHKT2;1, HKT2;1, Ni (Nipponbare)-OsHKT1, Po (Pokkali)-HKT1, OsHKT1;1, HKT1;1,OsHKT9, OsHKT2;4, HKT2;4
54211	38502046	Liu X., Xie Z., Xin J., Yuan S., Liu S., Sun Y., Zhang Y., Jin C.	OsbZIP18 Is a Positive Regulator of Phenylpropanoid and Flavonoid Biosynthesis under UV-B Radiation in Rice.	Plants (Basel)	13(4)		2024	CHI7,BZIP18,C4H2,2ODD2,CHS,_	CHI, OsCHI, OsCHI7, OsCHIL2, CHIL2,OsbZIP18,OsC4H, OsC4HL, C4H, OsC4H2,FLS, 2-ODD2, Os2-ODD2, Os2ODD2, OsF3H, F3H, F3H2, OsF3H2, OsF3H03g, F3H03g, OsSAH1, SAH1, OsF3H1, F3H1,CHS*, Oschs, chs, chas, OsCHS, OsCHS1, CHS1, OsPKS26, PKS26, OsCHS24, CHS24, OsCHS27, CHS27,OsPAL02, PAL02, OsPAL5, PAL5, OsPAL2. PAL2, OsPAL1
54212	38319323	Xu M., Zhang M., Tu Y., Zhang X.	Overexpression of the OsFes1A increased the phytosterols content and enhanced drought and salt stress tolerance in Arabidopsis.	Planta	259(3)	63	2024		
54213	38373370	Zhang G., Ren N., Huang L., Shen T., Chen Y., Yang Y., Huang X., Jiang M.	Basic helix-loop-helix transcription factor OsbHLH110 positively regulates abscisic acid biosynthesis and salinity tolerance in rice.	Plant Physiol. Biochem.	207	108423	2024		
54214	38576430	Wang Y., Zheng C., Peng Y.L., Chen Q.	DGS1 improves rice disease resistance by elevating pathogen-associated molecular pattern-triggered immunity.	Abiotech	5(1)	46-51	2024	PIP2A,GSK4,LE,SMG3	OsPIP2a, PIP2-1, PIP2a, PIP2.1, OsPIP2;1, PIP2;1, OsPIP2-1,OsSK23/OsGSK4, OsSK23, OsGSK4, SK23, OsGSK3, GSK3,OsRHC1, RHC1, OsLE, TT3.1, OsTT3.1,  OsRING133, RING133, DGS1, OsDGS1,OsUBC45, UBC45, OsSMG3
54215	38334305	Qing T., Xie T.C., Zhu Q.Y., Lu H.P., Liu J.X.	Regulation of metal homoeostasis by two F-group bZIP transcription factors bZIP48 and bZIP50 in rice.	Plant Cell Environ.	47(5)	1852-1864	2024		
54216	38396886	Baek D., Hong S., Kim H.J., Moon S., Jung K.H., Yang W.T., Kim D.H.	OsMYB58 Negatively Regulates Plant Growth and Development by Regulating Phosphate Homeostasis.	Int J Mol Sci	25(4)		2024	MIR399J,_,MIR399A,LTN1	OsmiR399j, osa-miR399j, osa-MIR399j, Os-miR399j, miR399j,OsMYB58/63-L, MYB58/63-L, OsMYB58/63a, MYB58/63a, Os2R_MYB29, 2R_MYB29, OsMYB58, MYB58,OsmiR399a, osa-miR399a, osa-MIR399a, Os-miR399a, miR399a,LTN1, OsPHO2, PHO2.1, PHO2.2, PHO2, OsUBC35, UBC35
54217	38384133	Gao X., Li J., Yin J., Zhao Y., Wu Z., Ma L., Zhang B., Zhang H., Huang J.	The protein phosphatase qGL3/OsPPKL1 self-regulates its degradation to orchestrate brassinosteroid signaling in rice.	Plant Commun		100849	2024	WD40-194	OsWD40-194,  OsDWD12, DWD12, OsWDR48
54218	38365588	Zhang H., Mu D., Li Y., Li X., Yan X., Li K., Jiao Y., Li J., Lin H., Lin W., Fang C.	Glutathione S-transferase activity facilitates rice tolerance to the barnyard grass root exudate DIMBOA.	BMC Plant Biol.	24(1)	117	2024	GSTU5,GSTU36	OsGSTU5,OsGSTU36
54219	38355084	Ahmed T., Guo J., Noman M., Lv L., Manzoor N., Qi X., Li B.	Metagenomic and biochemical analyses reveal the potential of silicon to alleviate arsenic toxicity in rice (Oryza sativa L.).	Environ. Pollut.	345	123537	2024		
54220	38354940	Wang Y., Wen J., Li S., Li J., Yu H., Li Y., Ren X., Wang L., Tang J., Zhang X., Liu Z., Peng L.	Upgrading pectin methylation for consistently enhanced biomass enzymatic saccharification and cadmium phytoremediation in rice Ospmes site-mutants.	Int. J. Biol. Macromol.	262(Pt 2)	130137	2024		
54221	38345835	Otake M., Teranishi M., Komatsu C., Hara M., Yoshiyama K.O., Hidema J.	Poaceae plants transfer cyclobutane pyrimidine dimer photolyase to chloroplasts for ultraviolet-B resistance.	Plant Physiol.			2024		
54222	38371313	Li L., Qiu M., Song S., Li Y., Wang T., Yang H., Dong H., Zhang L., Qiu Y., Xia S., Gong M., Wang J., Li L.	Loss of function of <i>OsL1</i> gene cause early flowering in rice under short-day conditions.	Mol. Breed.	44(3)	17	2024		
54223	38396854	Yuan H., Zheng Z., Bao Y., Zhao X., Lv J., Tang C., Wang N., Liang Z., Li H., Xiang J., Qian Y., Shi Y.	Identification and Regulation of Hypoxia-Tolerant and Germination-Related Genes in Rice.	Int J Mol Sci	25(4)		2024	TPP7,MSRMK2,EIL1A,ADH1,AMY3D	OsTPP7,OsMSRMK2, OsMAPK5, OsMAP1, OsMPK3, OsBIMK1, OsMAPK2, MPK5, BIMK1, MAPK2, MAPK5, MPK3, OsMPK5, OsMAPK3, OsMAPK5b, MAPK3,EIL1, OsEIL1, EIL1a, OsEIL1a, MHZ6/OsEIL1, MHZ6, OsMHZ6,Adh1, Adh1/2, adh1/adh2, OsADH1,Amy3D/E*(RAmy3D/E), alpha Amy3, AmyII-4, AMY1.3, Amy3D, Amy3D/E*, RAmy3D/E, Amy3D_E, Amy8, aAmy3, RAmy3D, OsAmy3D, alphaAmy3, OsRamy3D
54224	38374238	Chen Z., Zhou W., Guo X., Ling S., Li W., Wang X., Yao J.	Heat Stress Responsive Aux/IAA Protein, OsIAA29 Regulates Grain Filling Through OsARF17 Mediated Auxin Signaling Pathway.	Rice (N Y)	17(1)	16	2024	NAC20,IAA21,SBE1,DLN144,PDIL1-1,SSI,IAA29,ARF17	ONAC020, ONAC20, DLN1, OsDLN1,OsIAA21,sbe1, Rbe1. Sbe1, sbe1*(QEI), RBE1, BEI, SBE I, QEI, OsBEI, BE1, OsSBE1, OsSBEI, SBEI,OsDLN144,OsPDIL1;1, PDIL1;1, PDIL 1-1, PDI, OsPDIL1-1, OsTrx28, Trx28,OsSSI, SSS 1, SSS1, SS1, OsSS1, SSSI, OsSSSI,OsIAA29, OsEnS-141,OsARF17
54225	38437759	Wu J., Coskun D., Li G., Wang Z., Kronzucker H.J., Shi W.	OsEIL1 is involved in the response to heterogeneous high ammonium in rice: A split-root analysis.	J. Plant Physiol.	295	154205	2024		
54226	38293799	Xu N., Liang Y., Liu J.	The cocoon into a butterfly: why the HVA22 family proteins turned out to be the reticulophagy receptors in plants?	Autophagy		1-2	2024		
54227	38346083	Wang J., Zhu R., Meng Q., Qin H., Quan R., Wei P., Li X., Jiang L., Huang R.	A natural variation in OsDSK2a modulates plant growth and salt tolerance through phosphorylation by SnRK1A in rice.	Plant Biotechnol. J.			2024		
54228	38358523	Sun L., Xu H., Song J., Yang X., Wang X., Liu H., Pang M., Hu Y., Yang Q., Ning X., Liang S., Zhang S., Luan W.	OsNAC103, a NAC Transcription Factor, Positively Regulates leaf senescence and Plant Architecture in Rice.	Rice (N Y)	17(1)	15	2024	NAC103,NYC1,NOL,_,NAC58,LA1,NYC3,RCCR1,SGR,EAS1 	ONAC103, OsNAC103, OsNAC18 , NAC18,nyc1, OsNYC1,nol, NOL1, OsNOL, OsNOL1,OsSAG12, SAG12,OsNAP, NAP, ONAC058, ONAC58, Os PS1, PS1, OsCTb1, CTb1,OsLa1,nyc3, OsNYC3, PPH,OsRCCR1, OsRCCR, RCCR,sgr(t), sgr, OsSGR, OsSgr, SGR1, OsSGR1,OsPAO, PAO, OsACD1, ACD1, OsEAS1, RCD2, OsRCD2
54229	38039100	Liu M., Lu M., Zhao Z., Luo Q., Liu F., Zhao J., He Y., Tian Y., Zhan H.	Rice ILI atypical bHLH transcription factors antagonize OsbHLH157/OsbHLH158 during brassinosteroid signaling.	Plant Physiol.	194(3)	1545-1562	2024		
54230	37988625	Zhang H., Zhang J., Xu P., Li M., Li Y.	Insertion of a miniature inverted-repeat transposable element into the promoter of OsTCP4 results in more tillers and a lower grain size in rice.	J. Exp. Bot.	75(5)	1421-1436	2024		
54231	38421616	Zhou L., Mao Y.C., Yang Y.M., Wang J.J., Zhong X., Han Y., Zhang Y.F., Shi Q.S., Huang X.H., Meyers B.C., Zhu J., Yang Z.N.	Temperature and light reverse the fertility of rice P/TGMS line OsTMS19 via reactive oxygen species homeostasis.	Plant Biotechnol. J.			2024	TMS19	OsTMS19
54232	38475483	Yang W.T., Bae K.D., Lee S.W., Jung K.H., Moon S., Basnet P., Choi I.Y., Um T., Kim D.H.	The MYB-CC Transcription Factor PHOSPHATE STARVATION RESPONSE-LIKE 7 (PHL7) Functions in Phosphate Homeostasis and Affects Salt Stress Tolerance in Rice.	Plants (Basel)	13(5)		2024	PHL7	OsPHL7
54233	38475543	Zhao S., Fu S., Cao Z., Liu H., Huang S., Li C., Zhang Z., Yang H., Wang S., Luo J., Long T.	<i>OsUGT88C3</i> Encodes a UDP-Glycosyltransferase Responsible for Biosynthesis of Malvidin 3-<i>O</i>-Galactoside in Rice.	Plants (Basel)	13(5)		2024	UGT88C3	OsUGT88C3
54234	37949839	Zheng L., Yu Y., Zheng Y., Wang Y., Wu N., Jiang C., Zhao H., Niu D.	Long small RNA76113 targets CYCLIC NUCLEOTIDE-GATED ION CHANNEL 5 to repress disease resistance in rice.	Plant Physiol.	194(3)	1889-1905	2024	LSIR76113,CNGC17	lsiR76113, OslsiR76113,OsCNGC17, OsCNGC5, CNGC5, OsSTA282
54235	38540375	Sonsungsan P., Suratanee A., Buaboocha T., Chadchawan S., Plaimas K.	Identification of Salt-Sensitive and Salt-Tolerant Genes through Weighted Gene Co-Expression Networks across Multiple Datasets: A Centralization and Differential Correlation Analysis.	Genes (Basel)	15(3)		2024	TBP2,BZIP39,GATA23,_,BHLH32,IAA3	OsTBP2,OsbZIP39, bZIP39, DLN138, OsDLN138,OsGATA23, OsGATA23a, OsGATA23b,TFIIF,OsbHLH032, bHLH032, OsbHLH32, bHLH32, OsBIM1, BIM1,OsIAA3
54236	38409290	Liu M., Wang F., He B., Hu J., Dai Y., Chen W., Yi M., Zhang H., Ye Y., Cui Z., Zheng X., Wang P., Xing W., Zhang Z.	Targeting Magnaporthe oryzae effector MoErs1 and host papain-like protease OsRD21 interaction to combat rice blast.	Nat Plants	10(4)	618-632	2024	ORYB	OsRD21, RD21, OsORYB
54237	37976240	Liang J., Lu L., Zhou H., Fang J., Zhao Y., Hou H., Chen L., Cao C., Yang D., Diao Z., Tang D., Li S.	Receptor-like kinases OsRLK902-1 and OsRLK902-2 form immune complexes with OsRLCK185 to regulate rice blast resistance.	J. Exp. Bot.	75(5)	1565-1579	2024	RLCK377,RLK902-1	OsRLCK377, OsRLK902-2, RLK902-2,OsRLK902-1
54238	38412303	Xue B., Duan W., Gong L., Zhu D., Li X., Li X., Liang Y.K.	The OsDIR55 gene increases salt tolerance by altering the root diffusion barrier.	Plant J.			2024		
54239	38057158	Yu H., Teng Z., Liu B., Lv J., Chen Y., Qin Z., Peng Y., Meng S., He Y., Duan M., Zhang J., Ye N.	Transcription factor OsMYB30 increases trehalose content to inhibit &#x3b1;-amylase and seed germination at low temperature.	Plant Physiol.	194(3)	1815-1833	2024		
54240	38435472	Akter N., Kulsum U., Moniruzzaman M., Yasuda N., Akama K.	Truncation of the calmodulin binding domain in rice glutamate decarboxylase 4 (<i>Os</i>GAD4) leads to accumulation of &#x3b3;-aminobutyric acid and confers abiotic stress tolerance in rice seedlings.	Mol. Breed.	44(3)	21	2024		
54241	38475443	Cao Y., Lu M., Chen J., Li W., Wang M., Chen F.	Identification of OsSnRK1a-1 Regulated Genes Associated with Rice Immunity and Seed Set.	Plants (Basel)	13(5)		2024	PR1B,OSK1,GLT2,SNRK1BETA1,SNRK1BETA3	OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1, OsPR1a, PR1a,osk1, SnRK1A, OsSnRK1A, OsSNRK1a, SnRK1A/OSK1, SnRK1a, OsSnRK1.2, SnRK1.2, OsSnRK1alphaA, SnRK1alphaA,OsGLT2, OsNADH-GOGAT2, NADH-GOGAT2, OsGOGAT2, GOGAT2, OsGLU2, GLU2,OsSnRK1beta1, SnRK1beta1,akin-b, akin-beta, OsSnRK1beta3, SnRK1beta3
54242	38400858	Dan J., Xia Y., Wang Y., Zhan Y., Tian J., Tang N., Deng H., Cao M.	One-line hybrid rice with high-efficiency synthetic apomixis and near-normal fertility.	Plant Cell Rep.	43(3)	79	2024	PAIR1,OSD1,PLT6,RAD21-4	Pair1, OsPAIR1,OsOSD1,OsPLT6, AP2/EREBP#118, AP2/EREBP118, BBM1, OsBBM1, OsBBML1, BBML1, OsASGR-BBML1, ASGR-BBML1,OsRad21-4, REC8, OsREC8, OsRAD21-4
54243	38393406	Xue R., Guo R., Li Q., Lin T., Wu Z., Gao N., Wu F., Tong L., Zeng R., Song Y., Wang J.	Rice responds to Spodoptera frugiperda infestation via epigenetic regulation of H3K9ac in the jasmonic acid signaling and phenylpropanoid biosynthesis pathways.	Plant Cell Rep.	43(3)	78	2024		
54244	38190205	Geng L., Tan M., Deng Q., Wang Y., Zhang T., Hu X., Ye M., Lian X., Zhou D.X., Zhao Y.	Transcription factors WOX11 and LBD16 function with histone demethylase JMJ706 to control crown root development in rice.	Plant Cell			2024		
54245	38299434	Fang Y., Guo D., Wang Y., Wang N., Fang X., Zhang Y., Li X., Chen L., Yu D., Zhang B., Qin G.	Rice transcriptional repressor Ostie1 controls anther dehiscence and male sterility by regulating JA biosynthesis.	Plant Cell			2024	SPEAR2	OsSPEAR2, SPEAR2, OsTIE1, TIE1
54246	38267564	Kamble N.U.	Histone deacetylase OsHDA716 chilling out with OsbZIP46: antagonistically regulating cold stress tolerance in rice.	Plant Cell			2024		
54247	38262703	Yan H., Zhang W., Wang Y., Jin J., Xu H., Fu Y., Shan Z., Wang X., Teng X., Li X., Wang Y., Hu X., Zhang W., Zhu C., Zhang X., Zhang Y., Wang R., Zhang J., Cai Y., You X., Chen J., Ge X., Wang L., Xu J., Jiang L., Liu S., Lei C., Zhang X., Wang H., Ren Y., Wan J.	Rice LIKE EARLY STARVATION1 cooperates with floury endosperm 6 to modulate starch biosynthesis and endosperm development.	Plant Cell			2024	FLO6,LESV,LESV,PHS8	OsSIP4, SIP4, OsFLO6, OsSFq3, SFq3,OsLESV, LSD1, OsLSD1,OsLESV, FLO9, OsFLO9,ISA1, OsISA1, ISA, OsISA, PHS8/ISA1, OsPHS8, ISA I, OsISA I, ISAI, OsISAI
54248	38381507	Zhang Z., Sun M., Xiong T., Ye F., Zhao Z.	Development and genetic regulation of pollen intine in Arabidopsis and rice.	Gene	893	147936	2024		
54249	38299379	Li G.B., Liu J., He J.X., Li G.M., Zhao Y.D., Liu X.L., Hu X.H., Zhang X., Wu J.L., Shen S., Liu X.X., Zhu Y., He F., Gao H., Wang H., Zhao J.H., Li Y., Huang F., Huang Y.Y., Zhao Z.X., Zhang J.W., Zhou S.X., Ji Y.P., Pu M., He M., Chen X., Wang J., Li W., Wu X.J., Ning Y., Sun W., Xu Z.J., Wang W.M., Fan J.	Rice false smut virulence protein subverts host chitin perception and signaling at lemma and palea for floral infection.	Plant Cell			2024		
54250	38242836	Sun Y., Xie Z., Jin L., Qin T., Zhan C., Huang J.	Histone deacetylase OsHDA716 represses rice chilling tolerance by deacetylating OsbZIP46 to reduce its transactivation function and protein stability.	Plant Cell			2024		
54251	38243576	Alam O., Purugganan M.D.	Domestication and the evolution of crops: variable syndromes, complex genetic architectures, and ecological entanglements.	Plant Cell			2024		
54252	38242376	Li H., Song Liu X., Sun D., Min Yang Z.	A long non-coding RNA associated with H3K7me3 methylation negatively regulates OsZIP16 transcription under cadmium stress.	Gene	901	148173	2024		
54253	38243575	Jhu M.Y., Kundu A.	WOX11-LBD16 double partner dancing: A feedback circuitry for crown root development in Rice.	Plant Cell			2024		
54254	38170405	Mao X., Zheng X., Sun B., Jiang L., Zhang J., Lyu S., Yu H., Chen P., Chen W., Fan Z., Li C., Liu Q.	MKK3 Cascade Regulates seed dormancy Through a Negative Feedback Loop Modulating ABA Signal in Rice.	Rice (N Y)	17(1)	2	2024	MAPK4,MKK3,MFT2,_	OsMAPK4, OsMAP2, OsMSRMK3, OsMPK4, OsMPK7, MAP2, MSRMK3, MPK4, MPK7, MAPK7, OsMAPK7,OsMKK3, OsMAPKK3, MAPKK3, OsMEK8a, MEK8a, OsMEK3, MEK3,OsMFT2, OsMFT,OsNPK1-PK, NPK1-PK, OsMKKK62, MKKK62, OsMAPKKK62, MAPKKK62, MEK7, OsMEK7
54255	38193994	Li Y., Zhao L., Guo C., Tang M., Lian W., Chen S., Pan Y., Xu X., Luo C., Yi Y., Cui Y., Chen L.	OsNAC103, an NAC transcription factor negatively regulates plant height in rice.	Planta	259(2)	35	2024	OSKN2,NAC103,CYCU1;1	OsKn2, OsH71, HOS9, OSH71, OSH71/Oskn2,ONAC103, OsNAC103, OsNAC18 , NAC18,CycU1;1, CycU1;os;1, Orysa;CycU1;1, OsCYCP2;1, CYCP2;1
54256	38436004	Zhu F., Cheng H., Guo J., Bai S., Liu Z., Huang C., Shen J., Wang K., Yang C., Guan Q.	Vegetative cell wall protein OsGP1 regulates cell wall mediated soda saline-alkali stress in rice.	PeerJ	12	e16790	2024	TUB8,AGP31	OsTUB8, TUBB8,OsAGP31, OsGP1, GP1
54257	38650857	Liu Z., Fan Z., Wang L., Zhang S., Xu W., Zhao S., Fang S., Liu M., Kofi S.M., Zhang S., Kang N., Ai H., Li R., Feng T., Wei S., Zhao H.	Expression profiling of ALOG family genes during inflorescence development and abiotic stress responses in rice (<i>Oryza sativa</i> L.).	Front Genet	15	1381690	2024	G1L12,G1L5,G1L8,G1L11,G1,G1L3,G1L1,G1L2,BLS1,G1L4,G1L7,G1L13,G1L9,G1L10	OsG1L12,OsG1L5, TAW1, OsTAW1,OsG1L8,OsG1L11,g1 (lng), lng, g1, ELE, Os ELE, OsG1, G1/ELE, LSL2, OsLSL2,OsG1L3,OsG1L1,OsG1L2,OsBLS1, OsG1L6, G1L6, TH1, OsTH1, TH1/BSG1/BLS1/AFD1, BSG1, OsBSG1, AFD1, OsAFD1, BH1, OsBH1,OsG1L4,OsG1L7,OsG1L13,OsG1L9,OsG1L10
54258	38194166	Deng H., Cao S., Zhang G., Xiao Y., Liu X., Wang F., Tang W., Lu X.	OsVPE2, a Member of Vacuolar Processing Enzyme Family, Decreases Chilling Tolerance of Rice.	Rice (N Y)	17(1)	5	2024	VPE2	OsVPE2, OsaLeg1, OsLeg1, Leg1
54259	38173177	Liu D., Luo S., Li Z., Liang G., Guo Y., Xu Y., Chong K.	COG3 confers the chilling tolerance to mediate OsFtsH2-D1 module in rice.	New Phytol.	241(5)	2143-2157	2024	COG3	OsCOG3
54260	38525142	Cai Z., Dai Y., Jin X., Xu H., Huang Z., Xie Z., Yu X., Luo J.	Ambient temperature regulates root circumnutation in rice through the ethylene pathway: transcriptome analysis reveals key genes involved.	Front Plant Sci	15	1348295	2024	XTH19,ACO7,_,SUB1B,ERF82,_,ERF88,RMC,_,_,_,ACO5,YUCCA6,MDR1,_,ERF83,XTH16,ERF81,GNS1,EXPA6,EXPA29	OsXTH19,OsACO7,PTR, NPF8.1, OsNPF8.1,Sub1B, OsSUB1B, OsERF#063, OsERF063, ERF063, OsERF63, ERF63, AP2/EREBP#166, AP2/EREBP166,OsERF#082, OsERF082, OsERF82, AP2/EREBP#035, AP2/EREBP35,,OsERF#088, OsERF088, OsERF88, AP2/EREBP#024, AP2/EREBP24, OsAP23,OsRMC, OsRLK, OsDUF26, DUF26, OsCBMIP, CBMIP, NCS, OsNCS, OsCRK5, CRK5,,PTR, NPF8.1, OsNPF8.1,PTR, OsNPF3.1, NPF3.1,OsACO5, 2-ODD14, Os2-ODD14, 2ODD14, Os2ODD14,OsYUCCA6, OsYUC6, YUC6,OsABCB15, ABCB15, OsPGP15, OsMDR1, OsMDR2, MDR2, OsSTA125,,OsERF#083, OsERF083, OsERF83, AP2/EREBP#163, AP2/EREBP163,OsXTH16,OsERF#081, OsERF081, OsERF81, AP2/EREBP#014, AP2/EREBP14,OsPR2, PR2, Gns1, OsGNS1, OsEGL1,OsEXPA6, OsEXP6, osaEXPa1.24,OsEXPA29
54261	38195905	Yang Z., Zhu Z., Guo Y., Lan J., Zhang J., Chen S., Dou S., Yang M., Li L., Liu G.	OsMKK1 is a novel element that positively regulates the Xa21-mediated resistance response to Xanthomonas oryzae pv. oryzae in rice.	Plant Cell Rep.	43(2)	31	2024		
54262	38601316	Liu L., Ma Y., Zhao H., Guo L., Guo Y., Liu C.M.	Genome-wide association studies identified <i>OsTMF</i> as a gene regulating rice seed germination under salt stress.	Front Plant Sci	15	1384246	2024	SIP25	OsSIP25, OsTMF, TMF
54263	38189841	Zu H., Jin G., Kong Y., Li Z., Lou Y., Li R.	The N-terminal &#x3b1;2 helix element is critical for the activity of the rice transcription factor MYC2.	Plant Mol. Biol.	114(1)	2	2024		
54264	38202442	Ding X., Shi J., Gui J., Zhou H., Yan Y., Zhu X., Xie B., Liu X., He J.	Rice Seed Protrusion Quantitative Trait Loci Mapping through Genome-Wide Association Study.	Plants (Basel)	13(1)		2024	LC1,CTB2,ETR3	OsGH3-1, GH3-1, OsGH3.1,GH3.1, OsLC1,OsCTB2,OsETR3, OsERS4, OS-ETR3, OsETR3a, OsETR3b, PK2, OsPK2, OsETR2;1, ETR2;1
54265	38638359	Suganami M., Kojima S., Yoshida H., Mori M., Kawamura M., Koketsu E., Matsuoka M.	Low mutation rate of spontaneous mutants enables detection of causative genes by comparing whole genome sequences.	Front Plant Sci	15	1366413	2024	RAE3,_	OsRING273, RING273, OsRAE3,
54266	38018375	Wang P., Yamaji N., Mitani-Ueno N., Ge J., Ma J.F.	Knockout of a rice K5.2 gene increases Ca accumulation in the grain.	J Integr Plant Biol	66(2)	252-264	2024		
54267	38463565	Phosuwan S., Nounjan N., Theerakulpisut P., Siangliw M., Charoensawan V.	Comparative quantitative trait loci analysis framework reveals relationships between salt stress responsive phenotypes and pathways.	Front Plant Sci	15	1264909	2024	FRO2,NUC1,KS7	OsFRO2, OsFRO1,OsNUC1, OsNUC1-S, OsNUC1-L,OsKS7, KS7, KSL7, OsKSL7, DTC1, OsDTC1, OsKS3, OsDTC1/OsKS7, OsTPS6, TPS6, TPS38, OsTPS38
54268	38178576	Fu Z.W., Li J.H., Gao X., Wang S.J., Yuan T.T., Lu Y.T.	Pathogen-induced methylglyoxal negatively regulates rice bacterial blight resistance by inhibiting OsCDR1 protease activity.	Mol Plant	17(2)	325-341	2024		
54269	38256728	Li C., Lu C., Yang M., Wu G., Nyasulu M., He H., He X., Bian J.	Uncovering Novel QTLs and Candidate Genes for salt tolerance at the Bud Burst Stage in Rice through Genome-Wide Association Study.	Plants (Basel)	13(2)		2024		
54270	38516661	Mukkawar V., Roy D., Sue-Ob K., Jones A., Zhang C., Kumar Bhagat P., Kakkunnath S.M., Heuer S., Sadanandom A.	SUMOylation of OsPSTOL1 is essential for regulating phosphate starvation responses in rice and <i>Arabidopsis</i>.	Front Plant Sci	15	1274610	2024	PSTOL1	Pstol1, OsPSTOL1, OsPSTOL, PSTOL, Pstol1/OsPupK46-2, OsPupK46-2, Pup1, PHO
54271	38576779	Guo H., Lv J., Su X., Chen L., Ren J., Liu L., Ren M., Liu S., Dai M., Ren G., Gao F.	Rice <i>OseIF6.1</i> encodes a eukaryotic translation initiation factor and is essential for the development of grain and anther.	Front Plant Sci	15	1366986	2024	EIF6,EIF6;2,NMD3	eIF-6, OseIF6, OseIF6.1, eIF6.1,Os-eIF6;2, eIF6;2, OseIF6.2, eIF6.2,OsNMD3
54272	38167850	Su P., Kang H., Peng Q., Wicaksono W.A., Berg G., Liu Z., Ma J., Zhang D., Cernava T., Liu Y.	Microbiome homeostasis on rice leaves is regulated by a precursor molecule of lignin biosynthesis.	Nat Commun	15(1)	23	2024	_	OsPAL02, PAL02, OsPAL5, PAL5, OsPAL2. PAL2, OsPAL1
54273	38180592	Tan Q., Zhang X., Luo Q., Xu Y.C., Zhang J., Liang W.Q.	The RING Domain of Rice HEI10 is Essential for Male, But Not Female Fertility.	Rice (N Y)	17(1)	3	2024	HEI10	HEI10A, HEI10B, OsHEI10,  OsRING434, RING434
54274	38296835	Yang L., Xu L., Guo J., Li A., Qi H., Wang J., Song S.	SNAC1-OsERF103-OsSDG705 module mediates drought response in rice.	New Phytol.	241(6)	2480-2494	2024		
54275	38337880	Zhang M., Luo X., He W., Zhang M., Peng Z., Deng H., Xing J.	<i>OsJAZ4</i> Fine-Tunes Rice Blast Resistance and Yield Traits.	Plants (Basel)	13(3)		2024	TIFY6B,MAS,CHT1,NAC4,WRKY45	OsJAZ8, JAZ8, OsJAZ 4, OsJAZ4, JAZ4, OsTIFY6b, OsJAZ4-2, JAZ4-2. OsJAZ3, JAZ3,OsMAS, MAS1, OsMAS1, OsMAS/SDR110C-MS1, SDR110C-MS1, OsSDR110C-MS1, OsMS1, MS1,Cht1*(Chi1), Ch16, Cht1, CHT-1, CH16, RC24, OsChia1a, OsChia1, Chi1, Cht1*, Chi-1, Cht-1, Cht1, RCC1, OsCht-1, PR3, OsPR3,OsNAC4, NAC68, ONAC068, OnNAC4*, OnNAC4, OsNAC4/ONAC068,OsWRKY45, OsWRKY45-1, OsWRKY45-2, WRKY45-1, WRKY45-2
54276	38322756	Ludwig Y., Due&#xf1;as C., Arcillas E., Macalalad-Cabral RJ., Kohli A., Reinke R., Slamet-Loedin IH.	CRISPR-mediated promoter editing of a <i>cis</i>-regulatory element of <i>OsNAS2</i> increases Zn uptake/translocation and plant yield in rice.	Front Genome Ed	5	1308228	2023	NAS2	OsNAS2, OsNAS1
54277	38258425	Sun Y., Zhou Y., Long Q., Xing J., Guo P., Liu Y., Zhang C., Zhang Y., Fernie A.R., Shi Y., Luo Y., Luo J., Jin C.	OsBCAT2, a gene responsible for the degradation of branched-chain amino acids, positively regulates salt tolerance by promoting the synthesis of vitamin B5.	New Phytol.	241(6)	2558-2574	2024		
54278	38158885	Lv Y., Liu C., Li X., Wang Y., He H., He W., Chen W., Yang L., Dai X., Cao X., Yu X., Liu J., Zhang B., Wei H., Zhang H., Qian H., Shi C., Leng Y., Liu X., Guo M., Wang X., Zhang Z., Wang T., Zhang B., Xu Q., Cui Y., Zhang Q., Yuan Q., Jahan N., Ma J., Zheng X., Zhou Y., Qian Q., Guo L., Shang L.	A centromere map based on super pan-genome highlights the structure and function of rice centromeres.	J Integr Plant Biol	66(2)	196-207	2024	MAB	OsMAB
54279	38288993	Wang J., Li Y., Li M., Zhang W., Lu Y., Hua K., Ling X., Chen T., Guo D., Yang Y., Zheng Z., Liu Q., Zhang B.	Translatome and Transcriptome Analyses Reveal the Mechanism that Underlies the Enhancement of Salt Stress by the Small Peptide Ospep5 in Plants.	J. Agric. Food Chem.	72(8)	4277-4291	2024		
54280	38294722	Hou J., Xiao H., Yao P., Ma X., Shi Q., Yang J., Hou H., Li L.	Unveiling the mechanism of broad-spectrum blast resistance in rice: The collaborative role of transcription factor OsGRAS30 and histone deacetylase OsHDAC1.	Plant Biotechnol. J.			2024		
54281	38338728	Huang Y., Guo J., Sun D., Guo Z., Zheng Z., Wang P., Hong Y., Liu H.	Phosphatidyl Ethanolamine Binding Protein <i>FLOWERING LOCUS T-like 12</i> (<i>OsFTL12</i>) Regulates the Rice heading date under Different Day-Length Conditions.	Int J Mol Sci	25(3)		2024	ATH1,FTL12	OsATH1,OsFTL12, FT-L11
54282	38251949	Yan M., Xie M., Chen W., Si W.J., Lin H.H., Yang J.	Transcriptome analysis with different leaf blades identifies the phloem-specific phosphate transporter Ospho1;3 required for phosphate homeostasis in rice.	Plant J.			2024		
54283	38306931	Son S., Song G., Im J.H.	OsWRKY7 contributes to pattern-triggered immunity against Xanthomonas oryzae pv. oryzae.	Biochem. Biophys. Res. Commun.	700	149568	2024		
54284	38262965	Wu W., Shao Y., Wu Y., Gong Y., Guan X., Liu B., Lu Y.	New Horizons of Covalent Complex of Plant-Derived Recombinant Human Lactoferrin (OsrhLF) Combined with Different Polyphenols: Formation, Physicochemical Properties, and Gastrointestinal Fate.	J. Agric. Food Chem.	72(5)	2777-2788	2024		
54285	38252225	Wang J., Ao M., Ma A., Yu J., Guo P., Huang S., Peng X., Yun D.J., Xu Z.Y.	A Mitochondrial Localized Chaperone Regulator OsBAG6 Functions in Saline-Alkaline Stress Tolerance in Rice.	Rice (N Y)	17(1)	10	2024	BAG6,CAM1-1	OsBAG6,OsCaM1, OsCam1-1, OsCaM1-1, CAM3, Cam1-1, OsCAM1.1, CAM1.1
54286	37968901	Li R., Song Y., Wang X., Zheng C., Liu B., Zhang H., Ke J., Wu X., Wu L., Yang R., Jiang M.	OsNAC5 orchestrates OsABI5 to fine-tune cold tolerance in rice.	J Integr Plant Biol	66(4)	660-682	2024		
54287	38212485	Yang S., Chen N., Qi J., Salam A., Khan A.R., Azhar W., Yang C., Xu N., Wu J., Liu Y., Liu B., Gan Y.	OsUGE2 Regulates Plant Growth through Affecting ROS Homeostasis and Iron Level in Rice.	Rice (N Y)	17(1)	6	2024	FC24	OsUGE2, UGE2, OsFC24, BZ1, OsBZ1, OsBP1, BP1
54288	38216712	Singh P., Sundaram K.T., Vinukonda V.P., Venkateshwarlu C., Paul P.J., Pahi B., Gurjar A., Singh U.M., Kalia S., Kumar A., Singh V.K., Sinha P.	Superior haplotypes of key drought-responsive genes reveal opportunities for the development of climate-resilient rice varieties.	Commun Biol	7(1)	89	2024	ZFP182,RBLS2,GSK1,DREB1C,_,DSM3,DSR2	OsZFP182,  ZOS3-21, OsZOS3-21, ZOS3, OsZOS3,ASR1, OsAsr1, OsASR3, ASR3, Asr3, OsRBLS2,Os GSK1, OsGSK1, OsSK21/OsGSK1, OsSK21, SK21,OsDREB1C, CBF1, ERF26, OsERF026, OsERF#026, OsERF26, AP2/EREBP#098, AP2/EREBP98, OsCBF2, CBF2,OsLTPd11, OsLTP6, OsLtpVI.3, OsDIL, DIL,OsITPK2, ITPK2, OsDSM3, OsITP5/6K-2, OsITL1,OsDSR2
54289	38216610	Khan Z., Jan R., Asif S., Farooq M., Jang Y.H., Kim E.G., Kim N., Kim K.M.	Exogenous melatonin induces salt and drought stress tolerance in rice by promoting plant growth and defense system.	Sci Rep	14(1)	1214	2024	NHX3,HSFB1,SOS3,DREB1B	OsNHX3, OsNHX2, NHX2,HSfB1, OsHsfB1, OsHsf-23, HSF23, OsHsf23, OsHSF23, TBF1 ,CBL4, OsCBL4, OsSOS3,OsDREB1B, ERF31, OsERF031, OsERF#031, OsERF31, AP2/EREBP#169, AP2/EREBP169, OsDREB1b, OsDREB1C, OsCBF1, CBF1
54290	38213027	Ferrero-Serrano &#xc1;., Chakravorty D., Kirven K.J., Assmann S.M.	Oryza CLIMtools: A genome-environment association resource reveals adaptive roles for heterotrimeric G proteins in the regulation of rice agronomic traits.	Plant Commun	5(4)	100813	2024	DEP1,LK3,HD2,MADS50,D1	OsDEP1, EP, qPE9-1, DN1, DEP1/DN1/qPE9-1, qNGR9, qDEP1, RGG4/DEP1/DN1/qPE9-1/OsGGC3, RGG4, OsDN1, OsGGC3, GGC3,lk3(t), lk3(t)*, SG3, GS3, SG3-GS3, OsGW3, OsGS3, RGG3/GS3/Mi/OsGGC1, RGG3, Mi, OsGGC1, GGC1, OsSYL3, SYL3, TT2, OsTT2,Hd2(t), Hd2, qHD2(t), OsPRR37, Os-PRR37, PRR37, Prr4, OsPRR4, DTH7, Os DTH7, OsCCT28, CCT28, Ghd7.1, PRR37/Hd2, EH7-2, EH7-2/Hd2, Hd2/PRR37, PRR37-1a, PRR37-1b, PRR37-1c, PRR37-2a, PRR37- 2, HD7.2,OsMADS50, AGL20, SOC1, OsSOC1, RMADS208, OsSOC1/ OsMADS50/DTH3, DTH3, OsDTH3,d1, GPA1, GA1, OsGA1, RGA1, dwf1, XA7, RGA, D1/RGA1, D89, TGW5, OsTGW5, SRG5, OsSRG5
54291	38283972	Park J.R., Kim E.G., Jang Y.H., Kim K.M.	Utilization of the Winkler scale of plants using big data temperature presented by the Korea Meteorological Administration.	Front Plant Sci	14	1349606	2023	HAQ8	OsHAq8, HAq8
54292	38217288	Wu Y., Wang S., Wang P., Nie W., Ahmad I., Sarris P.F., Chen G., Zhu B.	Suppression of host plant defense by bacterial small RNAs packaged in outer membrane vesicles.	Plant Commun	5(4)	100817	2024	JMT2	OsJMT1, JMT1, OsJMT2
54293	38153938	Keil R., de Oliveira Neves L., da Silva LCO., Lamb T.I., Berghahn E., Pita F.M., Johann L., Wang Y., Feng Z., Wang G., Zuo S., Sperotto R.A.	Osmotin1 is involved in rice resistance to Schizotetranychus oryzae (Acari: Tetranychidae) infestation.	Pest Manag. Sci.	80(4)	2154-2161	2024		
54294	38228921	Chen W., Tang L., Li Q., Cai Y., Ahmad S., Wang Y., Tang S., Guo N., Wei X., Tang S., Shao G., Jiao G., Xie L., Hu S., Sheng Z., Hu P.	YGL3 Encoding an IPP and DMAPP Synthase Interacts with OsPIL11 to Regulate Chloroplast Development in Rice.	Rice (N Y)	17(1)	8	2024	PIL11,LAS1	OsPIL11, OsbHLH102, bHLH102, PIF4, OsPIF4,HDR, OsHDR, OsIspH, IspH, OsHDR1, HDR1, OsLAS1, LAS1/OsHMBPP, OsHMBPP, HMBPP, OsIspH1, IspH1, YGL3, OsYGL3
54295	38277982	Lim M.N., Lee S.E., Jeon J.S., Yoon I.S., Hwang Y.S.	OsbZIP38/87-mediated activation of OsHXK7 improves the viability of rice cells under hypoxic conditions.	J. Plant Physiol.	293	154182	2024		
54296	38256116	Herwibawa B., Lekklar C., Chadchawan S., Buaboocha T.	Association of a Specific <i>OsCULLIN3c</i> Haplotype with Salt Stress Responses in Local Thai Rice.	Int J Mol Sci	25(2)		2024	CUL3BC	OsCUL3c, CUL3c
54297	38276765	Zheng X., Yuan Z., Yu Y., Yu S., He H.	<i>OsCSD2</i> and <i>OsCSD3</i> Enhance Seed Storability by Modulating Antioxidant Enzymes and Abscisic Acid in Rice.	Plants (Basel)	13(2)		2024	SOD2,SODCC2	OsSOD2, OsSOD2-Cu/Zn, SOD2-Cu/Zn, OsCSD3, CSD3, CuZnSOD3, OsCSD2, CSD2, Cu/Zn-SOD2,Cu/Zn-SOD, Cu/Zn- SOD, OsCu-ZnSOD2, Cu-ZnSOD2, OsSODB, OsSOD3, SodCc2, Os SodCc2, sodB, OsSodB, RSODB, OssodCc1, OsCSD1.1, CSD1.1, OsCDS1, OsSOD3-CU/Zn, SOD3-CU/Zn, CuZnSOD2, Cu/ZnSOD2, OsCu/ZnSOD2, OsCSD1, CSD1, CuZnSOD1, OsCuZnSOD2, OsCSD4, CSD4, OsCSD3, CSD3, Cu/Zn-SOD3
54298	38279284	Lin Z., Yi X., Ali M.M., Zhang L., Wang S., Tian S., Chen F.	RNAi-Mediated Suppression of <i>OsBBTI5</i> Promotes Salt Stress Tolerance in Rice.	Int J Mol Sci	25(2)		2024	RBBI3-3,APX2	RBBI3-3, OsBBPI, BBPI, IBP1.2, OsIBP1.2, OsBBTI5, BBTI5,OsAPX2, OsAPx02, APXb, OsAPx2, OSAPX2, APx2, cAPX, OsAPX1, APX1
54299	38134329	McKinley L.N., Kern R.G., Assmann S.M., Bevilacqua P.C.	Flanking Sequence Cotranscriptionally Regulates Twister Ribozyme Activity.	Biochemistry	63(1)	53-68	2024		
54300	38130489	Li K., Cheng Y., Fang C.	<i>OsDWARF10</i>, transcriptionally repressed by <i>OsSPL3</i>, regulates the nutritional metabolism of polished rice.	Front Plant Sci	14	1322463	2023	LCRN1,D10	OsSPL3, SPL3, OsLCRN1,d10(d15,d16), d16, d15, dwf9, d10, OsCCD8b, OsCCD8, CCD8, OsD10
54301	38069359	Liu F., Ma D., Yu J., Meng R., Wang Z., Zhang B., Chen X., Zhang L., Peng L., Xia J.	Overexpression of an ART1-Interacting Gene <i>OsNAC016</i> Improves Al Tolerance in Rice.	Int J Mol Sci	24(23)		2023	ZOS12-02,FRDL4,MYB30,NAC16	OsART1, STAR3, OsZOS12-02, ART1,OsFRDL4, MATE,OsMYB30, OsMYB5P, MYB5P, OsMYB13a, MYB13a, Os2R_MYB26, 2R_MYB26, OsMYB30C, MYB30C,ONAC016, ONAC16, OsNAC016, OsNAC16
54302	38091933	Ding N., Cai J., Xiao S., Jiang L.	Heterologous expression of rice OsEXO70FX1 confers tolerance to cadmium in Arabidopsis thaliana and fission yeast.	Plant Physiol. Biochem.	206	108268	2024	EXO70X4,EXO70A4,EXO70C1,EXO70D1,EXO70FX7,EXO70FX14,EXO70G1,EXO70H3B,EXO70FX5,EXO70G2,EXO70H3A,EXO70FX4,EXO70H1,EXO70X3,EXO70H1B,EXO70B3,EXO70F1,SR1,RLS2,EXO70B2,EXO70FX13,EXO70H2,EXO70FX15,EXO70F4,EXO70D2,EXO70FX12,EXO70X1,EXO70C2,EXO70FX11,EXO70FX1,EXO70FX6,EXO70FX10,EXO70B1,EXO70F3,EXO70A2,EXO70A3,EXO70F2,EXO70FX9,EXO70FX2,EXO70FX3	OsEXO70X4, OsExo70X4, OrysaX4_Exo70, OsEXO70FX17, EXO70FX17,OsEXO70A4, OsExo70A4, OrysaA4_Exo70,OsEXO70C1, OsExo70C1, OrysaC1_Exo70, OrysaE1_Exo70,OsEXO70D1, OsExo70D1, OrysaD1_Exo70,OsEXO70FX7, OsExo70FX7, OrysaFX7_Exo70,OsEXO70FX14, OsExo70FX14, OrysaFX14_Exo70,OsEXO70G1, OsExo70G1, OrysaG1_Exo70,OsEXO70H3b, EXO70H3b, OsExo70H3b, OrysaH3b_Exo70,OsEXO70FX5, OsExo70FX5, OrysaFX5_Exo70,OsEXO70G2, OsExo70G2, OrysaG2_Exo70,OsEXO70H3a, EXO70H3a, OrysaH3a_Exo70, OsEXO70H3, EXO70H3,OsEXO70FX4, OsExo70FX4, OrysaFX4_Exo70, OsEXO70J1, EXO70J1,OsEXO70H1a, EXO70H1a, OsExo70H1a, OsEXO70H1b, EXO70H1b, OrysaH1_Exo70,OsEXO70X3, OsExo70X3, OrysaX3_Exo70, OsEXO70FX16, EXO70FX16,OsEXO70H1b, EXO70H1b,OsEXO70B3, OsExo70B3, OrysaB3_Exo70,OsEXO70F1, OsExo70F1, OrysaF1_Exo70,EXO70FX8, OsEXO70FX8, OsExo70FX8, OrysaFX8_Exo70, OsSR1,OsEXO70A1, OsExo70A1, EXO70A1, OrysaA1_Exo70,OsEXO70B2, OsExo70B2, OrysaB2_Exo70,OsEXO70FX13, OsExo70FX13, OrysaFX13_Exo70,OsEXO70H2, OsExo70H2, OrysaH2_Exo70,OsEXO70FX15, OsExo70FX15, OrysaFX15_Exo70,OsEXO70F4, OsExo70F4, OrysaF4_Exo70,OsEXO70D2, OsExo70D2, OrysaD2_Exo70,OsEXO70FX12, OsExo70FX12, OrysaFX12_Exo70,OsEXO70X1, OsExo70X1, OrysaX1_Exo70, OsEXO70E1, OsExo70E1, EXO70E1,OsEXO70C2, OsExo70C2, OrysaC2_Exo70,OsEXO70FX11, OsExo70FX11, OrysaFX11_Exo70,OsEXO70FX1, OsExo70FX1, OrysaFX1_Exo70, FX1, OsFX1,OsEXO70FX6, OsExo70FX6, OrysaFX6_Exo70,OsEXO70FX10, OsExo70FX10, OrysaFX10_Exo70,OsEXO70B1, OsExo70B1, OrysaB1_Exo70,OsEXO70F3, OsExo70F3, OrysaF3_Exo70, OsExo70-F3, Exo70-F3,OsEXO70A2, OsExo70A2, OrysaA2_Exo70,OsEXO70A3, OsExo70A3, OrysaA3_Exo70,OsEXO70F2, OsExo70F2, OrysaF2_Exo70, OsExo70-F2, Exo70-F2,OsEXO70FX9, OsExo70FX9, OrysaFX9_Exo70,OsEXO70FX2, OsExo70FX2, OrysaFX2_Exo70,OsEXO70FX3, OsExo70FX3, OrysaFX3_Exo70
54303	38063928	Wei S., Tanaka R., Kawakatsu T., Teramoto S., Tanaka N., Shenton M., Uga Y., Yabe S.	Genome- and Transcriptome-wide Association Studies to Discover Candidate Genes for Diverse Root Phenotypes in Cultivated Rice.	Rice (N Y)	16(1)	55	2023	DJA6,EXPA31,DEP1,PINE1,ENT1	OsDjA6, DjA6,OsEXPA31,OsDEP1, EP, qPE9-1, DN1, DEP1/DN1/qPE9-1, qNGR9, qDEP1, RGG4/DEP1/DN1/qPE9-1/OsGGC3, RGG4, OsDN1, OsGGC3, GGC3,OsPINE1, DLN266, OsDLN266, DEC1, OsDEC1,OsENT1
54304	38068693	Yang C., Wang H., Ouyang Q., Chen G., Fu X., Hou D., Xu H.	Deficiency of Auxin Efflux Carrier <i>OsPIN1b</i> Impairs Chilling and drought tolerance in Rice.	Plants (Basel)	12(23)		2023	PIN1B	PIN1A, OsPIN1A, OsPIN1a, REH1, OsPIN1, OsPIN1b, REH1/OsPIN1
54305	38068705	Li G., Cao R., Ma L., Jiao G., Chen P., Dong N., Li X., Duan Y., Li X., Zhu M., Shao G., Sheng Z., Hu S., Tang S., Wei X., Yu Y., Hu P.	<i>OsLEA1b</i> Modulates Starch Biosynthesis at High Temperatures in Rice.	Plants (Basel)	12(23)		2023	LEA1B	OsEnS-4, OsLEA1b, LEA1b
54306	38049038	Xu E., Zou Y., Yang G., Zhang P., Ha M.N., Mai Le Q., Zhang W., Chen X.	The Golgi-localized transporter OsPML4 contributes to manganese homeostasis in rice.	Plant Sci.	339	111935	2024	PML4	OsPML4
54307	38069474	He Y., Zhao Y., Hu J., Wang L., Li L., Zhang X., Zhou Z., Chen L., Wang H., Wang J., Hong G.	The OsBZR1-OsSPX1/2 module fine-tunes the growth-immunity trade-off in adaptation to phosphate availability in rice.	Mol Plant	17(2)	258-276	2024	SPX1,BZR1,D2,NOMT,PHR2,D11,SPX2	OsSPX1,OsBZR1, Os BZR1, OsBES1-6, BES1-6,d2, dwf2, CYP90D2, D2/CYP90D2, OsD2, SMG11, OsSMG11, D2/SMG11, OsD2a, OsD2b,OsNOMT, COMTL3, OsCOMTL3, OsCOMT29, COMT29,OsPHR2, Os-PHR2,d11(d8), dwf10, d8, D11/CYP724B1, d11, CYP724B1, GNS4, OsD11, PMM1, OsPMM1, PMM1/D11, NBG4, OsCPB1, CPB1, CPB1/D11,OsSPX2
54308	38140416	Wang X., Wu F., Zhang J., Bao Y., Wang N., Dou G., Meng D., Wang X., Li J., Shi Y.	Identification of the CNGC Gene Family in Rice and Mining of Alleles for Application in Rice Improvement.	Plants (Basel)	12(24)		2023	CNGC1,CNGC8,CNGC4,CNGC10,CNGC3,CNGC5,CNGC12,CNGC2,CNGC16,CNGC11,CNGC6,CNGC13,CDS1,CNGC7,CNGC9,CNGC17	OsCNGC1, OsCNGC15, CNGC15,OsCNGC8, OsCNGC6, CNGC6, OsCNGC9,OsCNGC4, OsCNGC12, CNGC12 ,OsCNGC10, OsCNGC11, CNGC11,OsCNGC3, OsCNGC7, CNGC7 ,OsCNGC5, OsCNGC10, CNGC10  ,OsCNGC12, OsCNGC2, CNGC2 ,OsCNGC2, OsCNGC1, CNGC1,OsCNGC16, OsCNGC8, CNGC8, OsSTA273,OsCNGC11, OsCNGC13, CNGC13, SSS1-D ,OsCNGC6, OsCNGC4, CNGC4, OsSTA107,OsCNGC13, OsCNGC1, OsCNGC3, CNGC3,OsCNGC15, CNGC15, OsCNGC9, CNGC9, OsCDS1,OsCNGC7, OsCNGC14, CNGC14 ,OsCNGC9, OsCNGC16, CNGC16,OsCNGC17, OsCNGC5, CNGC5, OsSTA282
54309	38202357	Bao G., Ashraf U., Li L., Qiao J., Wang C., Zheng Y.	Transcription Factor OsbZIP60-like Regulating <i>Osp5cs1</i> Gene and 2-Acetyl-1-pyrroline (2-AP) Biosynthesis in Aromatic Rice.	Plants (Basel)	13(1)		2023	O3,P5CS	OsbZIP60, bZIP60,OsP5CS, P5CS1, OsP5CS1, OsALDH18B1, ALDH18B1, OsP5CS-1, P5CS-1
54310	38148603	Xie Z., Jin L., Sun Y., Zhan C., Tang S., Qin T., Liu N., Huang J.	OsNAC120 balances plant growth and drought tolerance by integrating GA and ABA signaling in rice.	Plant Commun	5(3)	100782	2024	GNP1,NCED1,GA20OX3,SAPK9,SLR1,NAC120,NCED3	GA20OX1, OsGA20ox1, 20ox1, GA20ox-1, ga20ox1, Os20ox, C20OX2, OsGA20ox2, OsGA20ox-1, GA20ox1, OsGNP1,OSNCED1, OsNCED-1, OsNCED3, OsNced3, NCED3, OsNCED9, NCED9,OsGA20ox3, ga20ox3,OsSAPK9, OsSnRK2.9, SnRK2.9,slr1-1, slr1, slr, GAI, OsGAI, OsSLR1, Os SLR1, OsRGA1, OsGRAS-18, OsGRAS-18, GRAS-18, GRAS18, SLR-1,ONAC120,OSNCED3, OsNCED-3, OsNCED3, OsNCED3a, NCED3a, OsNCED4, NCED4, OsNECD2, OsNCED2b, NCED2b 
54311	38148161	Yang Z., Zhang Z., Long X., Shi X., Wang D., Peng D., Ye S., Ding Z.	Clarifying the functional role of serotonin in <i>Meloidogyne graminicola</i> host plant parasitism by immunolocalization and RNA interference.	Phytopathology			2023		
54312	38130060	Wang B., Xue P., Zhang Y., Zhan X., Wu W., Yu P., Chen D., Fu J., Hong Y., Shen X., Sun L., Cheng S., Liu Q., Cao L.	OsCPK12 phosphorylates OsCATA and OsCATC to regulate H2O2 homeostasis and improve oxidative stress tolerance in rice.	Plant Commun	5(3)	100780	2024	NOE1,CATA,ESL4	CATC, OsCat, OsCatC, OsCATC, OsNOE1, noe1, catC, OsCATC, CAT3, OsCAT3, LLM9428, OsLLM9428,CATA1, Cat A1*, OSCAT-A, Cat2, CatA1, CAT-A, OsCatA, OsCAT, CAT, catA, OSCATA, OsCATc, OsCATA, OsCAT1A, CAT1, OsCAT1, OsCATC, OsCAT2,CDPK12, OsCDPK12, OsCPK12, CPK12, OsESL4
54313	38202389	Yan M., Zhou Z., Feng J., Bao X., Jiang Z., Dong Z., Chai M., Tan M., Li L., Cao Y., Ke Z., Wu J., Feng Z., Pan T.	OsSHMT4 Is Required for Synthesis of Rice Storage Protein and Storage Organelle Formation in Endosperm Cells.	Plants (Basel)	13(1)		2023	CADT1	OsSHM4, SHM4, OsSHMT4, SHMT4, OsSHTM1, SHTM1, OsCADT1, FLO20, OsFLO20
54314	38160253	Gu T., Qi Z., Wang Y., Chen S., Yan J., Qiu H., Yu Y., Fang Z., Wang J., Gong J.	An endophytic fungus interacts with the defensin-like protein OsCAL1 to regulate cadmium allocation in rice.	Mol Plant	17(2)	312-324	2024		
54315	38127933	Ishida K., Ohba Y., Yoshimi Y., Wilson L.F.L., Echevarr&#xed;a-Poza A., Yu L., Iwai H., Dupree P.	Differing structures of galactoglucomannan in eudicots and non-eudicot angiosperms.	PLoS ONE	18(12)	e0289581	2023	GT47A-VII	OsGT47A-VII
54316	38148113	Gnanapragasam N., Prasanth V.V., Sundaram K.T., Kumar A., Pahi B., Gurjar A., Venkateshwarlu C., Kalia S., Kumar A., Dixit S., Kohli A., Singh U.M., Singh V.K., Sinha P.	Extreme trait GWAS (Et-GWAS): Unraveling rare variants in the 3,000 rice genome.	Life Sci Alliance	7(3)		2024		
54317	38159129	Samota M.K., Awana M., Krishnan V., Kumar S., Tyagi A., Pandey R., Mithra S.V.A., Singh A.	A novel&#xa0;micronutrients and methyl jasmonate cocktail of elicitors via seed priming improves drought tolerance by mitigating oxidative stress in rice (Oryza sativa&#xa0;L.).	Protoplasma	261(3)	553-570	2024		
54318	38145426	Ma A., Nan N., Shi Y., Wang J., Guo P., Liu W., Zhou G., Yu J., Zhou D., Yun D.J., Li Y., Xu Z.Y.	Autophagy receptor OsNBR1 modulates salt stress tolerance in rice.	Plant Cell Rep.	43(1)	17	2023		
54319	38133824	Li M., Guo P., Nan N., Ma A., Liu W., Wang T.J., Yun D.J., Xu Z.Y.	plasma membrane-localized H+-ATPase OsAHA3 functions in saline-alkaline stress tolerance in rice.	Plant Cell Rep.	43(1)	9	2023		
54320	38434111	Zamorski R., Baba K., Noda T., Sawada R., Miyata K., Itoh T., Kaku H., Shibuya N.	Variety-dependent accumulation of glucomannan in the starchy endosperm and aleurone cell walls of rice grains and its possible genetic basis.	Plant Biotechnol (Tokyo)	40(4)	321-336	2023	CSLA12	OsEnS-131, OsCslA12, OsMnS, MnS
54321	38159040	Zhong Q., Yu J., Wu Y., Yao X., Mao C., Meng X., Ming F.	Rice transcription factor OsNAC2 maintains the homeostasis of immune responses to bacterial blight.	Plant Physiol.			2023	XB22A	OsXb22a
54322	38110190	Li J., Chen Y., Zhang R., Wu B., Xiao G.	Expression identification of three <i>OsWRKY</i> genes in response to abiotic stress and hormone treatments in rice.	Plant Signal Behav	18(1)	2292844	2023	WRKY70,WRKY24,WRKY53	OsWRKY70,OsWRKY24,OsWRKY53, WRKY-53
54323	38158656	Zhao Q., Bao J., Li H., Hu W., Kong Y., Zhong Y., Fu Q., Xu G., Liu F., Jiao X., Jin J., Ming Z.	Structural and biochemical basis of FLS2-mediated signal activation and transduction in rice.	Plant Commun	5(3)	100785	2024	FLS2,RLCK176,SERK1,RLCK185	Os-FLS2, OsFLS2, OsCLV2f, CLV2f,OsRLCK176,OsSERK1, OsSERK2, OsBiSERK1, SERK2, BiSERK1, OsSerk2, OsBAK1-2,OsRLCK185
54324	38093151	Kim S.H., Yoon J., Kim H., Lee S.J., Paek N.C.	Rice Basic Helix-Loop-Helix 079 (OsbHLH079) Delays leaf senescence by Attenuating ABA Signaling.	Rice (N Y)	16(1)	60	2023	NAC58,BZIP12,BLR1,BZIP46,BZIP72	OsNAP, NAP, ONAC058, ONAC58, Os PS1, PS1, OsCTb1, CTb1,OsbZIP12, OsABF1, ABF1, OsOSE2, OSE2, OsbZIP12/OsABF1,OsbHLH079, OsbHLH79, bHLH079, bHLH79, OsBLR1, OsBCL2, BCL2,ABL1, bZIP46, OsABL1, OsbZIP46, OsAREB8, OsABF2, ABF2, OsABF3, ABF3, OsbZIP46CA1, OsZIP46, ZIP46, OsbZIP46/OsABF2,OsbZIP72, OsAREB2, OsABF4, ABF4, Osbzip72, OsABI5, ABI5
54325	38100249	Zhang M., Chen D., Tian J., Cao J., Xie K., He Y., Yuan M.	OsGELP77, a QTL for broad-spectrum disease resistance and yield in rice, encodes a GDSL-type lipase.	Plant Biotechnol. J.	22(5)	1352-1371	2024	GELP77,WRKY45	OsGELP77, OsGELP77a, OsGELP77b,OsWRKY45, OsWRKY45-1, OsWRKY45-2, WRKY45-1, WRKY45-2
54326	38139326	Jia Y., Gu X., Chai J., Yao X., Cheng S., Liu L., He S., Peng Y., Zhang Q., Zhu Z.	Rice OsANN9 Enhances Drought Tolerance through Modulating ROS Scavenging Systems.	Int J Mol Sci	24(24)		2023	ANN4	OsANN4, OsANN9, ANN9
54327	38098211	Shen T., Xu F., Chen D., Yan R., Wang Q., Li K., Zhang G., Ni L., Jiang M.	A B-box transcription factor OsBBX17 regulates saline-alkaline tolerance through the MAPK cascade pathway in rice.	New Phytol.	241(5)	2158-2175	2024		
54328	38148863	Ambadas D.A., Singh A., Jha R.K., Chauhan D., B S., Sharma V.K.	Genome-wide dissection of AT-hook motif nuclear-localized gene family and their expression profiling for drought and salt stress in rice (<i>Oryza sativa</i>).	Front Plant Sci	14	1283555	2023	AHL6,AHL12,AHL13,AHL1,AHL10,DP1,PTC2,AHL7,AHP1,AHL17,AHL2,AHL20,AHL3,_,AHL15,AHL16,AHL5,AHL18,AHL19,AHL9	OsAHL6,OsAHL12,OsAHL13,OsAHL1, OsAHL14, AHL14,OsAHL10,dp1, pa, DP1/PAL1, PAL1, OsDP1, OsAHL11, AHL11,OsPTC2, OsAHL4, AHL4,OsAHL7,OsAHP1, OsAHL8, AHL8,OsAHL17, AHL,OsAHL2,OsAHL20,OsAHL3,OsAHL1, AHL1,OsAHL15, AHL,OsAHL16,OsAHL5,OsAHL18,OsAHL19,OsAHL9
54329	38156012	Sun Y., Jing D., Zhang J., Du L., Li C., Lan Y., Lin F., Zhou T.	Yield components affected by rice black-streaked dwarf virus disease in rice cultivars with different resistance levels.	Front Microbiol	14	1323569	2023	AP47	OsAP47
54330	38139197	Adhikari A., Aneefi A.G., Sisuvanh H., Singkham S., Pius M.V., Akter F., Kwon E.H., Kang S.M., Woo Y.J., Yun B.W., Lee I.J.	Dynamics of Humic Acid, Silicon, and Biochar under Heavy Metal, Drought, and Salinity with Special Reference to Phytohormones, Antioxidants, and Melatonin Synthesis in Rice.	Int J Mol Sci	24(24)		2023	LSI1,MTP1,NHX1,NRAMP1,LSI2	lsi1, NIP2-1, OsNIP2;1, NIP2;1, OsLsi1, lsi(t), OsNIP2.1/OsLsi1/OsSIIT1, OsNIP2.1, NIP2.1,OsMTP1,OsNHX1, OcNHX1, OgNHX1, OrNHX1, OpNHX1, ObNHX1,OsNramp1, OsNRAMP1, OsNramp6,Lsi2, SIET1, OsLsi2, OsSIET1
54331	38102566	Wang W., Chen W., Wang J.	FRIZZLE PANICLE (FZP) regulates rice spikelets development through modulating cytokinin metabolism.	BMC Plant Biol.	23(1)	650	2023	GN1A,FZP,DST	Gn1a, OsCKX2, CKX2, ckx2, Gn1a/OsCKX2, Os CKX2, CKX2/Gn1a,fzp*, fzp, OsBD1, BD1, OsERF#078, OsERF078, OsERF78, ERF78, AP2/EREBP#133, AP2/EREBP133, BFL1, SGDP7, OsSGDP7,OsDST, DLN102, OsDLN102, HST1, OsHST1
54332	38140509	Qu Z., Nakanishi H.	Amino Acid Residues of the Metal Transporter OsNRAMP5 Responsible for Cadmium Absorption in Rice.	Plants (Basel)	12(24)		2023	LCD1	NRAMP5, OsNRAMP5, OsNramp5, OsLCD1
54333	38103049	Liu J., Liu J., He M., Zhang C., Liu Y., Li X., Wang Z., Jin X., Sui J., Zhou W., Bu Q., Tian X.	OsMAPK6 positively regulates rice cold tolerance at seedling stage via phosphorylating and stabilizing OsICE1 and OsIPA1.	Theor. Appl. Genet.	137(1)	10	2023		
54334	38124291	Arra Y., Auguy F., Stiebner M., Ch&#xe9;ron S., Wudick M.M., Miras M., Schepler-Luu V., K&#xf6;hler S., Cunnac S., Frommer W.B., Albar L.	Rice Yellow Mottle Virus resistance by genome editing of the Oryza sativa L. ssp. japonica nucleoporin gene OsCPR5.1 but not OsCPR5.2.	Plant Biotechnol. J.	22(5)	1299-1311	2024	CPR5.2,RYMV2	OsCPR5.2,OsCPR5-1, CPR5-1, OsRYMV2, OsCPR5.1, CPR5.1
54335	38124464	Li B., Jia Y., Xu L., Zhang S., Long Z., Wang R., Guo Y., Zhang W., Jiao C., Li C., Xu Y.	Transcriptional convergence after repeated duplication of an amino acid transporter gene leads to the independent emergence of the black husk/pericarp trait in barley and rice.	Plant Biotechnol. J.	22(5)	1282-1298	2024	BH4	Bh4, OsBH4, OsATL14, ATL14
54336	38116956	Jia J., Luo Y., Wu Z., Ji Y., Liu S., Shu J., Chen B., Liu J.	OsJMJ718, a histone demethylase gene, positively regulates seed germination in rice.	Plant J.	118(1)	191-202	2024		
54337	38276717	Ullah A., Lin Y.J., Zhang H., Yu X.Z.	Identification of the Key Genes Involved in Proline-Mediated Modification of Cell Wall Components in Rice Seedlings under Trivalent Chromium Exposure.	Toxics	12(1)		2023	XTH16,_,PRX77,UGP1,PME25,GAUT21,BGLU29,XTH1,DEL1,GAUT19,PGL27,PGL9,BGLU24,PME26,BMY1,BMY2,BGLU33,XTH10,XTH9,GAUT12,GAUT3,ATP6	OsXTH16,OsPAL05, PAL05, OsPAL3, PAL5, PAL3, OsPAL2;3, PAL2;3, OsPAL2-1, PAL2-1,prx77, OsPRX77,Ugp1, OsUgp1, UGP2, UGP3,OsPME25,OsGAUT21,Os9bglu29, OsBGlu29, OsBGLU29,OsXTH1,OsPLL12, PLL12,OsGAUT19,OsPGL27,OsPGL9,Os6bglu24, Os6BGlu24, 6BGlu24,OsPME26,OsBMY1 ,OsBMY2, OsBmy6, Bmy6,Os9bglu33, Os9Bglu33, 9bglu33, OsBGLU33,OsXTH10,OsXTH9, OsXET9, XTH1, OsXTH1,OsGAUT12,OsGAUT3,atp6, OsPOX1, prx3, POX1
54338	37997501	Zheng C., Zhou J., Yuan X., Zheng E., Liu X., Cui W., Yan C., Wu Y., Ruan W., Yi K., Chen J., Wang X.	Elevating plant immunity by translational regulation of a rice WRKY transcription factor.	Plant Biotechnol. J.	22(4)	1033-1048	2024	PR10A,WRKY7	PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsWRKY7
54339	38029613	Wu K., Wang L., Wu Z., Liu Z., Li Z., Shen J., Shi S., Liu H., Rensing C., Feng R.	Selenite reduced cadmium uptake, interfered signal transduction of endogenous phytohormones, and stimulated secretion of tartaric acid based on a combined analysis of non-invasive micro-test technique, transcriptome and metabolome.	Plant Physiol. Biochem.	206	108107	2024	SUB33,_,SAUR37,SAUR46,EXPA18,BGLU24,_,EXPA8	OsSub33,SAUR32, OsSAUR32,OsSAUR37, SAUR76, OsSAUR76,OsSAUR46, SAUR36, OsSAUR36,OsEXPA18, OsEXP18, osaEXPa1.3,Os6bglu24, Os6BGlu24, 6BGlu24,SAUR36, OsSAUR36,OsEXPA8, OsEXP8, osaEXPa1.17
54340	38068681	Qiu D., Wu Y., Xia K., Zhang M., Zhang Z., Tian Z.	Genome-Wide Identification and Characterization of Long Non-Coding RNAs in Roots of Rice Seedlings under Nitrogen Deficiency.	Plants (Basel)	12(23)		2023	F3'H5,LNCRNA24320.6	OsF3'H5,lncRNA24320.6
54341	38028647	Naveenkumar R., Anandan A., Prabhukarthikeyan S.R., Mahender A., Sangeetha G., Vaish S.S., Singh P.K., Hussain W., Ali J.	Dissecting genomic regions and underlying sheath blight resistance traits in rice (<i>Oryza sativa</i> L.) using a genome-wide association study.	Plant Direct	7(11)	e540	2023	DR10,MPK7,MDHAR3	OsDR10,OsMPK7, OsMAPK44, MAPK44, OsMAPK20-5, MAPK20-5,MDHAR, OsMDHAR, OsMDAR3, MDAR3, OsMDHAR3, MDHAR1, OsMDHAR1
54342	38032410	Fan X., Tang H., Chen X., Zeng F., Chen G., Chen Z.H., Qin Y., Deng F.	Allene oxide synthase 1 contributes to limiting grain arsenic accumulation and seedling detoxification in rice.	Stress Biol	3(1)	52	2023	AOS1,PT4,NIP3;2,RCS3,AOS2	OsAOS, OsAOS1, CYP74A1, OsAOS2, AOS2,OsPT4, PHT1-4, OsPht1;4, PHT1-2, PHT1;4, OsPHT1;4,OsNIP3;2, NIP3-2, OsNIP3.2, NIP3.2,rcs3, OsRCS3, OsOASTL-A1, OASTL-A1,OsAOS2, CYP74A2, OsAOS, OsAOS1
54343	37994014	Qiao J., Quan R., Wang J., Li Y., Xiao D., Zhao Z., Huang R., Qin H.	OsEIL1 and OsEIL2, two master regulators of rice ethylene signaling, promote the expression of ROS scavenging genes to facilitate coleoptile elongation and seedling emergence from soil.	Plant Commun	5(3)	100771	2024	EIL1A,PRX37,PRX81,PRX82,MPG3,EIL2,PRX88	EIL1, OsEIL1, EIL1a, OsEIL1a, MHZ6/OsEIL1, MHZ6, OsMHZ6,prx37, OsPRX37, POD37, OsPOD37,prx81, OsPRX81,prx82, OsPRX82,OsMPG3, OsVTC1-3, VTC1-3,OsEIL2,prx88, OsPRX88
54344	38068583	Liu X., Gao Y., Zhao X., Zhang X., Ben L., Li Z., Dong G., Zhou J., Huang J., Yao Y.	Validation of Novel Reference Genes in Different Rice Plant Tissues through Mining RNA-Seq Datasets.	Plants (Basel)	12(23)		2023	OS9,ZOS3-23,GDCP,ACT1,MED7	OsOS-9, OS-9,OsZOS3-23,OsGDCP,OsACT1,OsMED7, OsMed7_1, Med7_1 
54345	38056173	Wang L., Zhang X., Li L., Bao J., Lin F., Zhu X.	A key sphingolipid pathway gene, MoDes1, regulates conidiation, virulence and plasma membrane tension in Magnaporthe oryzae.	Microbiol. Res.	279	127554	2024		
54346	38044192	Yang C., Luo A., Lu H.P., Davis S.J., Liu J.X.	Diurnal regulation of alternative splicing associated with thermotolerance in rice by two glycine-rich RNA-binding proteins.	Science Bulletin	69(1)	59-71	2024	ELF3.2,GRP162,GRP3	ELF3_chr.1, OsELF3.2, ELF3.2, OsELF3-2, ELF3-2, OsELF3b, ELF3b,OsGRP162,OsGRP3, RTP, RBP-152 
54347	38009305	Li M., Li H., Zhu Q., Liu D., Li Z., Chen H., Luo J., Gong P., Ismail A.M., Zhang Z.	Knockout of the sugar transporter OsSTP15 enhances grain yield by improving tiller number due to increased sugar content in the shoot base of rice (Oryza sativa L.).	New Phytol.	241(3)	1250-1265	2024		
54348	37996983	Wang H., Chen M., Zhang D., Meng X., Yan J., Chu J., Li J., Yu H.	Shaping rice Green Revolution traits by engineering ATG immediate upstream 5'-UTR sequences of OsSBI and OsHTD1.	Plant Biotechnol. J.	22(3)	532-534	2024	SBI,D17	GA2OX4, OsGA2ox4, ga2ox 4, OsGA2ox-4, OsSBI,d17(t), dwf14, d17, htd1, OsCCD7, CCD7, D17/HTD1, HTD1, OsHTD1, OsD17
54349	38019652	Liang Y., Meng F., Zhao X., He X., Liu J.	OsHLP1 is an endoplasmic-reticulum-phagy receptor in rice plants.	Cell Rep	42(12)	113480	2023	ATG8B,HLP1,NAC70	OsATG8b, Atg8b,OsHLP1,ONAC070, ONAC70, OsNTL6, NTL6, OsNAC78
54350	38068638	Zhang C., Mao X., Feng X., Sun Y., Wang Z., Tang J., Yu H.	OsALB3 Is Required for Chloroplast Development by Promoting the Accumulation of Light-Harvesting Chlorophyll-Binding Proteins in Rice.	Plants (Basel)	12(23)		2023	YLL1	OsALB3, ALB3, OsYLL1
54351	38136960	Qiu L., Su J., Fu Y., Zhang K.	Genetic and Transcriptome Analyses of Callus Browning in Chaling Common Wild Rice (<i>Oryza rufipogon</i> Griff.).	Genes (Basel)	14(12)		2023		
54352	38069217	Park J.R., Jang Y.H., Kim E.G., Hur S.S., Kim K.M.	Quantitative Trait Loci Mapping Identified Candidate Genes Involved in plant height Regulation in Rice.	Int J Mol Sci	24(23)		2023	SD1	sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2, OsPHQ1, OsPHq1, PHq1
54353	38007197	Jiadkong K., Fauzia A.N., Yamaguchi N., Ueda A.	Exogenous riboflavin (vitamin B2) application enhances salinity tolerance through the activation of its biosynthesis in rice seedlings under salinity stress.	Plant Sci.	339	111929	2024		
54354	38222285	Dhingra Y., Lahiri M., Bhandari N., Kaur I., Gupta S., Agarwal M., Katiyar-Agarwal S.	Genome-wide identification, characterization, and expression analysis unveil the roles of pseudouridine synthase (PUS) family proteins in rice development and stress response.	Physiol Mol Biol Plants	29(12)	1981-2004	2023		
54355	38037655	Peng B., Sun X., Tian X., Kong D., He L., Peng J., Liu Y., Guo G., Sun Y., Pang R., Zhou W., Zhao J., Wang Q.	<i>OsNAC74</i> affects grain protein content and various biological traits by regulating <i>OsAAP6</i> expression in rice.	Mol. Breed.	43(12)	87	2023		
54356	38005759	Wang J., Zhang C., Li H., Xu Y., Zhang B., Zheng F., Zhao B., Zhang H., Zhao H., Liu B., Xiao M., Zhang Z.	OsJAB1 Positively Regulates Ascorbate Biosynthesis and Negatively Regulates Salt Tolerance Due to Inhibiting Early-Stage Salt-Induced ROS Accumulation in Rice.	Plants (Basel)	12(22)		2023	PCNA,JAB1	OsPCNA,Osjab1, jab1, OsJAB1, CSN5, OsCSN5,OsCSN5A CSN5A, 
54357	37967065	Prodjinoto H., Irakoze W., Gandonou C., Quinet M., Lutts S.	Comparison between the impact of osmotic and NaCl treatments on the expression of genes coding for ion transporters in Oryza glaberrima Steud.	PLoS ONE	18(11)	e0290752	2023	SOS2,NHX1,HKT4,SKC1,SOS1,DREB2A,NHX3	CIPK24, OsCIPK24, OsSOS2, OsSnRK3.22, SnRK3.22,OsNHX1, OcNHX1, OgNHX1, OrNHX1, OpNHX1, ObNHX1,OsHKT4, OsHKT1;1, HKT1;1, OsHKT2, RNC4, OsHKT1;1-FL, OsHKT1;1-V1, OsHKT1;1-V2, OsHKT1;1-V3, OsHKT1;1-V4, OsHKT1;1-V5, OsHKT1;1-V6, OsHKT1;1-V7, OsHKT1;1-V8,OsHKT8, HKT8, Os-HKT1;5, OsHKT1;5, HKT1;5, SKC1, qSKC-1(t), OsSKC1,OsSOS1, OsNHA1, NHA1, SOS1/NHX7, NHX7, OsNHX7,OsDREB2A, OsDREB2a, ERF40, OsERF#040, OsERF040, OsERF40, AP2/EREBP#167, AP2/EREBP167,OsNHX3, OsNHX2, NHX2
54358	38003430	Guo S., Zheng C., Wang Y., Xu Y., Wu J., Wang L., Liu X., Chen Z.	OsmiRNA5488 Regulates the Development of Embryo Sacs and Targets <i>OsARF25</i> in Rice (<i>Oryza sativa</i> L.).	Int J Mol Sci	24(22)		2023	MIR5488,ARF6B	miR5488, osa-miR5488, osa-MIR5488, OsmiR5488,OsARF6b, OsARF25, ARF25
54359	37956936	Krishnappa C., Balamurugan A., Velmurugan S., Kumar S., Sampathrajan V., Kundu A., Javed M., Chouhan V., Ganesan P., Kumar A.	Rice foliar-adapted Pantoea species: Promising microbial biostimulants enhancing rice resilience against foliar pathogens, Magnaporthe oryzae and Xanthomonas oryzae pv. oryzae.	Microb. Pathog.	186	106445	2024		
54360	37967709	Zhang X., Xue W., Qi L., Zhang C., Wang C., Huang Y., Wang Y., Peng L., Liu Z.	Malic acid inhibits accumulation of cadmium, lead, nickel and chromium by down-regulation of OsCESA and up-regulation of OsGLR3 in rice plant.	Environ. Pollut.	341	122934	2024		
54361	37955978	Qin S., Li W., Zeng J., Huang Y., Cai Q.	Rice tetraspanins express in specific domains of diverse tissues and regulate plant architecture and root growth.	Plant J.	117(3)	892-908	2024		
54362	37950159	Jiang N., Shi Y., Li M., Du Z., Chen J., Jiang W., Huang Y., Zhong M., Yang J., Hu B., Huang J.	Expression of OsHARBI1-1 enhances the tolerance of Arabidopsis thaliana to cadmium.	BMC Plant Biol.	23(1)	556	2023	HARBI1-2,HARBI1-32,HARBI1-19,HARBI1-33,HARBI1-9,HARBI1-29,HARBI1-3,HARBI1-1,HARBI1-7,HARBI1-30,HARBI1-4,HARBI1-27,HARBI1-16,HARBI1-24,HARBI1-23,HARBI1-17,HARBI1-21,HARBI1-20,HARBI1-5,HARBI1-31,HARBI1-13,HARBI1-6,POW1,HARBI1-28,HARBI1-10,HARBI1-14,HARBI1-25,HARBI1-11,HARBI1-12,HARBI1-18,HARBI1-26,HARBI1-15,HARBI1-8	OsHARBI1-2,OsHARBI1-32,OsHARBI1-19,OsHARBI1-33,OsHARBI1-9,OsHARBI1-29,OsHARBI1-3,OsHARBI1-1,OsHARBI1-7,OsHARBI1-30,OsHARBI1-4,OsHARBI1-27,OsHARBI1-16,OsHARBI1-24,OsHARBI1-23,OsHARBI1-17,OsHARBI1-21,OsHARBI1-20,OsHARBI1-5,OsHARBI1-31,OsHARBI1-13,OsHARBI1-6,OsPOW1, PANDA, OsPANDA, HPY1, OsHPY1, OsHARBI1-22, HARBI1-22,OsHARBI1-28,OsHARBI1-10,OsHARBI1-14,OsHARBI1-25,OsHARBI1-11,OsHARBI1-12,OsHARBI1-18,OsHARBI1-26,OsHARBI1-15,OsHARBI1-8
54363	37965680	Mai H., Qin T., Wei H., Yu Z., Pang G., Liang Z., Ni J., Yang H., Tang H., Xiao L., Liu H., Liu T.	Overexpression of OsACL5 triggers environmentally-dependent leaf rolling and reduces grain size in rice.	Plant Biotechnol. J.	22(4)	833-847	2024	DEP1,GW2,ACL5,LK3	OsDEP1, EP, qPE9-1, DN1, DEP1/DN1/qPE9-1, qNGR9, qDEP1, RGG4/DEP1/DN1/qPE9-1/OsGGC3, RGG4, OsDN1, OsGGC3, GGC3,OsGW2, OsRING429, RING429, GNL44, OsGNL44,OsACL5,lk3(t), lk3(t)*, SG3, GS3, SG3-GS3, OsGW3, OsGS3, RGG3/GS3/Mi/OsGGC1, RGG3, Mi, OsGGC1, GGC1, OsSYL3, SYL3, TT2, OsTT2
54364	37967711	Zhang W., Guan M., Chen M., Lin X., Xu P., Cao Z.	Mutation of OsNRAMP5 reduces cadmium xylem and phloem transport in rice plants and its physiological mechanism.	Environ. Pollut.	341	122928	2024		
54365	37968542	Shekhawat P.K., Sardar S., Yadav B., Salvi P., Soni P., Ram H.	Meta-analysis of transcriptomics studies identifies novel attributes and set of genes involved in iron homeostasis in rice.	Funct. Integr. Genomics	23(4)	336	2023	VTL3,NL2,VTL4,VTL1,NL1	OsVTL3,OsVTL5, VTL5, OsNL2,OsVTL4,OsVTL1,OsVTL2, VTL2, OsNL1
54366	37984048	Yang L., Jiang L.	The seven rice vacuolar sorting receptors localize to prevacuolar compartments.	J. Plant Physiol.	291	154137	2023	VSR1,VSR6,VSR2,VSR7,VSR3,VSR4,VSR3	OsVSR1,OsVSR6,OsVSR2,OsVSR7,VSR3, OsVSR3, OsVSR5, VSR5,OsVSR4,OsVSR3
54367	37940897	Gao Q., Yin X., Wang F., Zhang C., Xiao F., Wang H., Hu S., Liu W., Zhou S., Chen L., Dai X., Liang M.	jacalin-related lectin 45 (OsJRL45) isolated from 'sea rice 86' enhances rice salt tolerance at the seedling and reproductive stages.	BMC Plant Biol.	23(1)	553	2023	JRL7,UMAMIT15	OsJRL07, JRL07, OsJRL7, OsJRL45, JRL45,OsUMAMIT15
54368	37938788	Jin X., Chen J., Khan A., Chen Z., Gao R., Lu Y., Zheng X.	Triacylglycerol lipase, OsSG34, plays an important role in grain shape and appearance quality in rice.	Plant J.	117(3)	840-855	2024	SG34	OsSG34
54369	37942234	Que Z., Lu Q., Li Q., Shen C.	The rice annexin gene <i>OsAnn5</i> is involved in cold stress tolerance at the seedling stage.	Plant Direct	7(11)	e539	2023	ANN5	OsANN5
54370	38003241	Gao S., Hou Y., Huang Q., Wu P., Han Z., Wei D., Xie H., Gu F., Chen C., Wang J.	Osa-miR11117 Targets <i>OsPAO4</i> to Regulate Rice Immunity against the Blast Fungus <i>Magnaporthe oryzae</i>.	Int J Mol Sci	24(22)		2023	PAO4,MIR11117	OsPAO4, OsAO1, AO1,Osa-miR11117, miR11117, miR-T21
54371	37932442	Ma X., Xu H., Tong Y., Luo Y., Dong Q., Jiang T.	Structural and functional investigations of <EM class="new_gene">syn-copalyl diphosphate synthase</EM> from Oryza sativa.	Commun Chem	6(1)	240	2023	CPS4	OsCPS4, CYC1, OsCYC1, OsCyc1, cpsl3, OsCPSL3, OsCPSsyn, OsCyc1/OsCPS4, OsTPS15, Os-CPS4, TPS11, OsTPS11
54372	38023936	Li X., Zhang J., Shangguan X., Yin J., Zhu L., Hu J., Du B., Lv W.	Knockout of <i>OsWRKY71</i> impairs <i>Bph15</i>-mediated resistance against brown planthopper in rice.	Front Plant Sci	14	1260526	2023	_,EXO70FX4,BPH15,WRKY71,STPS	RGA2,OsEXO70FX4, OsExo70FX4, OrysaFX4_Exo70, OsEXO70J1, EXO70J1,RLCK134, OsRLCK134, OsLecRK1, LecRK1, SDRLK-LecRK1, OsSDRLK-LecRK1, OslecRK, lecRK, Bph15, OsBph15, Bph15 (Qbp2), Qbp2, qBPH-4,OsWRKY71, WRKY-71,OsSTPS, OsSTPS2, STPS2, OsEBFS, EBFS, TPS5, OsTPS5
54373	38001837	Yoo Y., Yoo Y.H., Lee D.Y., Jung K.H., Lee S.W., Park J.C.	Caffeine Produced in Rice Plants Provides Tolerance to Water-Deficit Stress.	Antioxidants (Basel)	12(11)		2023	CDPK11,CDPK6,CDPK5,CDPK25,RAB16B,CDPK24,ERF42,CDPK10,CDPK21,CDPK9,CDPK30,CDPK1,CDPK18,ESL4,DHN6,NHX1,CDPK26,BZIP72,CDPK22,CDPK16,CDPK3,P5CS,RSUS2,CDPK4,CDPK2,NAC45,CDPK31,CDPK14	OsCDPK11, OsCPK11, CPK11,OsCDPK6, OsCPK6, CPK6,OsCDPK5, OsCPK5, CPK5,OsCDPK25, OsCPK25, CPK25,rab21, OsLEA28, OsRAB16D, OsRab16d, Rab16d, OsRAB16b, XERO1, OsXERO1, OsRD22, RD22,OsCDPK24, OsCPK24, OsCDPK14, CPK24,OsERF#042, OsERF042, OsERF42, AP2/EREBP#048, AP2/EREBP48, OsDREB2B, DREB2B, OsDREB2B2, OsDREB2A, DREB2A,OsCDPK10, OsCPK10, CPK10,OsCDPK21, OsCPK21, CPK21, CPK-21,OsCDPK9, OsCPK9, CPK9,OsCDPK30, OsCPK30, CPK30,OsCDPK1, OsCPK1, CPK1,OsCDPK18, OsCPK18, CDPK5, OsCDPK5, CPK18,CDPK12, OsCDPK12, OsCPK12, CPK12, OsESL4,OsLEA25, LEA25, OsEnS-143, OsRAB21, RAB21, Rab17, OsRab17,OsNHX1, OcNHX1, OgNHX1, OrNHX1, OpNHX1, ObNHX1,OsCDPK26, OsCPK26, CPK26,OsbZIP72, OsAREB2, OsABF4, ABF4, Osbzip72, OsABI5, ABI5,OsCDPK22, OsCPK22, CPK22,OsCDPK16, OsCPK16, CPK16,OsCDPK3, OsCPK3, CPK3,OsP5CS, P5CS1, OsP5CS1, OsALDH18B1, ALDH18B1, OsP5CS-1, P5CS-1,sus2, RSus2(t), SUS2, SS1, OsScS1, RSs1, RSus2, OsSUS2, RSS1, RSus1, OsSusy2, Susy2, OsRSUS1, RSUS1,OsCDPK4, OsCPK4, CPK4, CDPK1,OsCDPK2, OsCPK2, CPK2,ONAC045, ONAC45, DLN243, OsDLN243, OsNAM, NAM,OsCDPK31, OsCPK31, CPK31,OsCDPK14, OsCPK14, CPK14
54374	38310612	Wang X., Yuan S., Wang C., Yan W., Xie G., Wang C., Qiu S., Wu J., Deng X.W., Xu C., Tang X.	Construction of a female sterility Maintaining System Based on a Novel Mutation of the MEL2 Gene.	Rice (N Y)	17(1)	12	2024		
54375	38321036	Zhang X., Liu Y., Yuan G., Wang S., Wang D., Zhu T., Wu X., Ma M., Guo L., Guo H., Bhadauria V., Liu J., Peng Y.L.	The synthetic NLR RGA5HMA5 requires multiple interfaces within and outside the integrated domain for effector recognition.	Nat Commun	15(1)	1104	2024	RGA5,RGA4	Os11gRGA5, OsRGA5, RGA5-A, RGA5-B, Pi5, Pias-2,Os11gRGA4, OsRGA4, Pias-1
54376	38623166	Pandey S.	Agronomic potential of plant-specific G&#x3b3; proteins.	Physiol Mol Biol Plants	30(2)	337-347	2024		
54377	38335888	Li Z., Chen H., Guan Q., Li L., Xuan Y.H.	Gibberellic acid signaling promotes resistance to saline-alkaline stress by increasing the uptake of ammonium in rice.	Plant Physiol. Biochem.	207	108424	2024		
54378	38303561	Kim J.H., Yu J., Kim J.Y., Park Y.J., Bae S., Kang K.K., Jung Y.J.	Phenotypic characterization of pre-harvest sprouting resistance mutants generated by the CRISPR/Cas9-geminiviral replicon system in rice.	BMB Rep	57(2)	79-85	2024		
54379	38326230	Yu L., Zhou J., Lin J., Chen M., Liu F., Zheng X., Zhou L., Wang R., Xiao L., Liu Y.	Perception of strigolactones and the coordinated phytohormonal regulation on rice (<i>Oryza sativa</i>) tillering is affected by endogenous ascorbic acid.	Funct. Plant Biol.	51		2024		
54380	38305492	Zhuang H., Li Y.H., Zhao X.Y., Zhi J.Y., Chen H., Lan J.S., Luo Z.J., Qu Y.R., Tang J., Peng H.P., Li T.Y., Zhu S.Y., Jiang T., He G.H., Li Y.F.	STAMENLESS1 activates SUPERWOMAN 1 and FLORAL ORGAN NUMBER 1 to control floral organ identities and meristem fate in rice.	Plant J.			2024		
54381	38381127	Tian D., Teo J., Yin Z.	Ectopic Expression of the Executor-Type <i>R</i> Gene Paralog <i>Xa27B</i> in Rice Leads to Spontaneous Lesions and Enhanced disease resistance.	Mol. Plant Microbe Interact.	37(2)	143-154	2024		
54382	37923431	Li H., Li C., Sun D., Yang Z.M.	OsPDR20 is an ABCG metal transporter regulating cadmium accumulation in rice.	J Environ Sci (China)	136	21-34	2024		
54383	38324190	Luo J.S., Tang J., He Y., Liu D., Yang Y., Zhang Z.	Overexpression of vacuolar transporters OsVIT1 and OsVIT2 reduces cadmium accumulation in rice.	Plant Mol. Biol.	114(1)	14	2024		
54384	37933683	Takai T.	Potential of rice tillering for sustainable food production.	J. Exp. Bot.	75(3)	708-720	2024		
54385	38308138	Wakasa Y., Kawakatsu T., Ishimaru K., Ozawa K.	Generation of major glutelin-deficient (GluA, GluB, and GluC) semi-dwarf Koshihikari rice line.	Plant Cell Rep.	43(2)	51	2024		
54386	38368727	Alvi A.F., Khan S., Khan N.A.	Hydrogen sulfide and ethylene regulate sulfur-mediated stomatal and photosynthetic responses and heat stress acclimation in rice.	Plant Physiol. Biochem.	207	108437	2024		
54387	38326370	Guo N., Tang S., Wang Y., Chen W., An R., Ren Z., Hu S., Tang S., Wei X., Shao G., Jiao G., Xie L., Wang L., Chen Y., Zhao F., Sheng Z., Hu P.	A mediator of OsbZIP46 deactivation and degradation negatively regulates seed dormancy in rice.	Nat Commun	15(1)	1134	2024	MODD,ABI5	OsMODD ,OsABI5, OsbZIP10, OsABF1, OREB1, OsABI5-1, OsABI5-2, OsOREB1, OREB1 
54388	38324196	Mirza Z., Gupta M.	Iron reprogrammes the root system architecture by regulating OsWRKY71 in arsenic-stressed rice (Oryza sativa L.).	Plant Mol. Biol.	114(1)	11	2024		
54389	38393160	Jiang J., Shi Y., Tian F., Long T., Li X., Ying R.	Bioaccumulation of Microcystin-LR and Induced Physio-Biochemical Changes in Rice (<i>Oryza sativa</i> L.) at Vegetative Stage under Hydroponic Culture Conditions.	Toxins (Basel)	16(2)		2024		
54390	38309388	Ma Z., Zhu Y., Wang Z., Chen X., Cao J., Liu G., Li G., Wei H., Zhang H.	Effect of starch and protein on eating quality of japonica rice in Yangtze River Delta.	Int. J. Biol. Macromol.	261(Pt 2)	129918	2024		
54391	38357415	Brady M.J., Cheam M., Gent J.I., Dawe R.K.	The maize <i>striate leaves2</i> (<i>sr2</i>) gene encodes a conserved DUF3732 domain and is homologous to the rice <i>yss1</i> gene.	Plant Direct	8(2)	e567	2024		
54392	38332248	Xiao L., Gheysen G., Yang M., Xiao X., Xu L., Guo X., Yang L., Liu W., He Y., Peng D., Peng H., Ma K., Long H., Wang G., Xiao Y.	Brown planthopper infestation on rice reduces plant susceptibility to Meloidogyne graminicola by reducing root sugar allocation.	New Phytol.	242(1)	262-277	2024		
54393	38326652	Yu Y., Zhao F., Yue Y., Zhao Y., Zhou D.X.	Lysine acetylation of histone acetyltransferase adaptor protein ADA2 is a mechanism of metabolic control of chromatin modification in plants.	Nat Plants	10(3)	439-452	2024		
54394	38180820	Feng Y., Ma X., Yang Y., Tao S., Ahmed A., Gong Z., Cheng X., Zhang W.	The roles of DNA methylation on pH dependent i-motif&#xa0;(iM) formation in rice.	Nucleic Acids Res.	52(3)	1243-1257	2024		
54395	38340214	Meselhy A.G., Mosa K., Chhikara S., Kumar K., Musante C., White J.C., Dhankher O.P.	Plasma membrane intrinsic protein OsPIP2;6 is involved in root-to-shoot arsenic translocation in rice (Oryza sativa L.).	Plant Cell Rep.	43(3)	64	2024		
54396	38325660	Sedeek K., Mohammed N., Zhou Y., Zuccolo A., Sanikommu K., Kantharajappa S., Al-Bader N., Tashkandi M., Wing R.A., Mahfouz M.M.	Multitrait engineering of Hassawi red rice for sustainable cultivation.	Plant Sci.	341	112018	2024		
54397	37837419	J&#xf6;st M., Soltani O., Kappel C., Janiak A., Chmielewska B., Szurman-Zubrzycka M., McKim S.M., Lenhard M.	The gain-of-function mutation blf13 in the barley orthologue of the rice growth regulator NARROW LEAF1 is associated with increased leaf width.	J. Exp. Bot.	75(3)	850-867	2024		
54398	38307858	Liao B., Xiang Y.H., Li Y., Yang K.Y., Shan J.X., Ye W.W., Dong N.Q., Kan Y., Yang Y.B., Zhao H.Y., Yu H.X., Lu Z.Q., Zhao Y., Zhao Q., Guo D., Guo S.Q., Lei J.J., Mu X.R., Cao Y.J., Han B., Lin H.X.	Dysfunction of duplicated pair rice histone acetyltransferases causes segregation distortion and an interspecific reproductive barrier.	Nat Commun	15(1)	996	2024	HWE1,HWE2	hwe1(t)*, hwe1, OsHWE1, OsEAF6/HWE1, OsEAF6, EAF6, HWS2, OsHWS2,OsHWE2, OsEAF6/HWE2, OsEAF6, EAF6, HWS1, OsHWS1
54399	38373874	Sachdeva S., Singh R., Maurya A., Singh V.K., Singh U.M., Kumar A., Singh G.P.	New insights into QTNs and potential candidate genes governing rice yield via a multi-model genome-wide association study.	BMC Plant Biol.	24(1)	124	2024		
54400	38373744	Wang J.Y., Chen G.E., Balakrishna A., Jamil M., Berqdar L., Al-Babili S.	Strigolactone biosynthesis in rice can occur via a 9-cis-3-OH-10'-apo-&#x3b2;-carotenal intermediate.	FEBS Lett.	598(5)	571-578	2024		
54401	38387222	Huang S., Ashraf U., Duan M., Ren Y., Xing P., Yan Z., Tang X.	Ultrasonic seed treatment improved seed germination, growth, and yield of rice by modulating associated physio-biochemical mechanisms.	Ultrason Sonochem	104	106821	2024		
54402	38366760	Imamichi T., Kusumoto N., Aoyama H., Takamatsu S., Honda Y., Muraoka S., Hagiwara-Komoda Y., Chiba Y., Onouchi H., Yamashita Y., Naito S.	Phylogeny-linked occurrence of ribosome stalling on the mRNAs of Arabidopsis unfolded protein response factor bZIP60 orthologs in divergent plant species.	Nucleic Acids Res.			2024		
54403	38374189	Gogoi S., Singh S., Swamy B.P.M., Das P., Sarma D., Sarma R.N., Acharjee S., Deka S.D.	Grain iron and zinc content is independent of anthocyanin accumulation in pigmented rice genotypes of Northeast region of India.	Sci Rep	14(1)	4128	2024		
54404	38362665		Corrigendum to: The D14-SDEL1-SPX4 cascade integrates the strigolactone and phosphate signalling networks in rice.	New Phytol.	242(1)	317-319	2024		
54405	38397061	Lopes Hornai EM., Aycan M., Mitsui T.	The Promising B-Type Response Regulator <i>hst1</i> Gene Provides Multiple High Temperature and Drought Stress Tolerance in Rice.	Int J Mol Sci	25(4)		2024		
54406	38351214	Yang T., Song L., Hu J., Qiao L., Yu Q., Wang Z., Chen X., Lu G.D.	Magnaporthe oryzae effector AvrPik-D targets a transcription factor WG7 to suppress rice immunity.	Rice (N Y)	17(1)	14	2024	WG7	OsCW-ZF7, CW-ZF7, CWZF7, OsWG7, AKIP695, OsAKIP695
54407	38405933	Mendieta J.P., Tu X., Jiang D., Yan H., Zhang X., Marand A.P., Zhong S., Schmitz R.J.	Investigating the <i>cis</i>-Regulatory Basis of C3 and C4 Photosynthesis in Grasses at Single-Cell Resolution.	bioRxiv			2024		
54408	38396991	Wang H., Jia Y., Bai X., Gong W., Liu G., Wang H., Xin J., Wu Y., Zheng H., Liu H., Wang J., Zou D., Zhao H.	Whole-Transcriptome Profiling and Functional Prediction of Long Non-Coding RNAs Associated with Cold Tolerance in Japonica Rice Varieties.	Int J Mol Sci	25(4)		2024		
54409	38498476	Fang H., Chen H., Wang J., Li N., Zhang L., Wei C.	G1 Interacts with OsMADS1 to Regulate the Development of the sterile lemma in Rice.	Plants (Basel)	13(4)		2024		
54410	38397832	Somsri A., Chu S.H., Nawade B., Lee C.Y., Park Y.J.	Harnessing <i>&#x3b3;-TMT</i> Genetic Variations and Haplotypes for Vitamin E Diversity in the Korean Rice Collection.	Antioxidants (Basel)	13(2)		2024		
54411	38396893	Kim H.J., Jang J.W., Pham T., Tuyet V., Kim J.H., Park C.W., Gho Y.S., Kim E.J., Kwon S.W., Jeon J.S., Kim S.T., Jung K.H., Kim Y.J.	<i>OsLRR-rlp2</i> Gene Regulates Immunity to <i>Magnaporthe oryzae</i> in <i>Japonica</i> Rice.	Int J Mol Sci	25(4)		2024		
54412	38353738	Nguyen T.M., Wu P.Y., Chang C.H., Huang L.F.	High-yield BMP2 expression in rice cells via CRISPR and endogenous &#x3b1;Amy3 promoter.	Appl. Microbiol. Biotechnol.	108(1)	206	2024		
54413	38345745	Yang Y., Tagaloguin P., Chaffin T.A., Shao Y., Mazarei M., Millwood R.J., Stewart C.N.	Drought stress-inducible synthetic promoters designed for poplar are functional in rice.	Plant Cell Rep.	43(3)	69	2024		
54414	38376569	Moon H., Jeong A.R., Park C.J.	Rice NLR protein XinN1, induced by a pattern recognition receptor XA21, confers enhanced resistance to bacterial blight.	Plant Cell Rep.	43(3)	72	2024	XINN1	OsXinN1
54415	38498546	Lu L., Chen X., Tan Q., Li W., Sun Y., Zhang Z., Song Y., Zeng R.	Gibberellin-Mediated Sensitivity of Rice Roots to Aluminum Stress.	Plants (Basel)	13(4)		2024		
54416	38434411	Abd-El-Aty MS., Kamara M.M., Elgamal W.H., Mesbah M.I., Abomarzoka E.A., Alwutayd K.M., Mansour E., Ben Abdelmalek I., Behiry S.I., Almoshadak A.S., Abdelaal K.	Exogenous application of nano-silicon, potassium sulfate, or proline enhances physiological parameters, antioxidant enzyme activities, and agronomic traits of diverse rice genotypes under water deficit conditions.	Heliyon	10(5)	e26077	2024		
54417	38375792	Hu Y., Tian C., Song S., Li R.	Insights on the enhancement of chilling tolerance in Rice through over-expression and knock-out studies of OsRBCS3.	Plant Signal Behav	19(1)	2318514	2024		
54418	38346994	Bordoloi D., Sarma D., Sarma Barua N., Das R., Das B.K.	Morpho-molecular and nutritional profiling for yield improvement and value addition of indigenous aromatic Joha rice of Assam.	Sci Rep	14(1)	3509	2024		
54419	38035729	Zhang W., Wu M., Zhong X., Liu Y., Yang X., Cai W., Zhu K., Zhang H., Gu J., Wang Z., Liu L., Zhang J., Yang J.	Involvement of brassinosteroids and abscisic acid in spikelet degeneration in rice under soil drying during meiosis.	J. Exp. Bot.	75(5)	1580-1600	2024		
54420	38409933	Gao R., Jia Y., Xu X., Fu P., Zhou J., Yang G.	Structural insights into the Oryza sativa cation transporters HKTs in salt tolerance.	J Integr Plant Biol	66(4)	700-708	2024		
54421	38409937	Zhou J., Nie L., Zhang S., Mao H., Arimura S.I., Jin S., Wu Z.	Mitochondrial genome editing of WA352 via mitoTALENs restore fertility in cytoplasmic male sterile rice.	Plant Biotechnol. J.			2024		
54422	38442627	Cheng Y.S., Sun Y.D., Xing J.Y., Zhan L., Li X.J., Huang J., Zhao M.H., Guo Z.F.	Transcriptomic and functional analyzes reveal that the brassinosteroid insensitive 1 receptor (OsBRI1) regulates cold tolerance in rice.	Plant Physiol. Biochem.	208	108472	2024		
54423	38418937	Jiang L., Lyu S., Yu H., Zhang J., Sun B., Liu Q., Mao X., Chen P., Pan D., Chen W., Fan Z., Li C.	Transcription factor encoding gene OsC1 regulates leaf sheath color through anthocyanidin metabolism in Oryza rufipogon and Oryza sativa.	BMC Plant Biol.	24(1)	147	2024		
54424	38430047	Jahan N., Raihan M.S., Islam M.M., Era F.M., Alalawy A.I., Omran A.M.E., Alanazi Y.F., Sakran M., Alasmari A., Alzuaibr F.M., El Sabagh A., Kahrizi D., Islam AKMA.	Genome-wide association studies of salinity tolerance in local aman rice.	Cell. Mol. Biol. (Noisy-le-grand)	70(2)	10-17	2024		
54425	38414239	Dong N.Q., Lin H.X.	An abundant valuable resource for salt-tolerance allele hunting in rice.	Plant Commun	5(4)	100853	2024		
54426	38475489	Yang Y., Zhou T., Xu J., Wang Y., Pu Y., Qu Y., Sun G.	Genome-Wide Identification and Expression Analysis Unveil the Involvement of the Cold Shock Protein (CSP) Gene Family in Cotton Hypothermia Stress.	Plants (Basel)	13(5)		2024		
54427	38535302	Wang Y., Tan C., Li Y., Meng F., Du Y., Zhang S., Jiang W., Feng N., Zhao L., Zheng D.	5-ALA, DTA-6, and Nitrogen Mitigate NaCl Stress by Promoting Photosynthesis and Carbon Metabolism in Rice Seedlings.	Metabolites	14(3)		2024		
54428	37837603	Hsiao P.Y., Zeng C.Y., Shih M.C.	Group VII ethylene response factors forming distinct regulatory loops mediate submergence responses.	Plant Physiol.	194(3)	1745-1763	2024		
54429	38535554	Wang D., Zhu F., Wang J., Ju H., Yan Y., Qi S., Ou Y., Tian C.	Pathogenicity Analyses of Rice Blast Fungus (<i>Pyricularia oryzae</i>) from <i>Japonica</i> Rice Area of Northeast China.	Pathogens	13(3)		2024		
54430	38400956	Nivedha R., Manonmani S., Kalaimagal T., Raveendran M., Kavitha S.	Assessing the Genetic Diversity of Parents for Developing Hybrids Through Morphological and Molecular Markers in Rice (Oryza sativa L.).	Rice (N Y)	17(1)	17	2024		
54431	38388963	Zhang T., Li C., Zhu J., Li Y., Wang Z., Tong C.Y., Xi Y., Han Y., Koiwa H., Peng X., Zhang X.	Structured 3' UTRs destabilize mRNAs in plants.	Genome Biol.	25(1)	54	2024		
54432	38386103	Dwivedi S.L., Quiroz L.F., Spillane C., Wu R., Mattoo A.K., Ortiz R.	Unlocking allelic variation in circadian clock genes to develop environmentally robust and productive crops.	Planta	259(4)	72	2024		
54433	38623165	Rengasamy B., Manna M., Thajuddin N.B., Sathiyabama M., Sinha A.K.	Breeding rice for yield improvement through CRISPR/Cas9 genome editing method: current technologies and examples.	Physiol Mol Biol Plants	30(2)	185-198	2024		
54434	38329633	Shao Y., Zhou Y., Yang L., Mu D., Wilson I.W., Zhang Y., Zhu L., Liu X., Luo L., He J., Qiu D., Tang Q.	Genome-wide identification of GATA transcription factor family and the effect of different light quality on the accumulation of terpenoid indole alkaloids in Uncaria rhynchophylla.	Plant Mol. Biol.	114(1)	15	2024		
54435	38346562	de Souza MA., de Andrade LIF., Gago J., Pereira E.G.	Photoprotective mechanisms and higher photorespiration are key points for iron stress tolerance under heatwaves in rice.	Plant Sci.	342	112031	2024		
54436	38352530	Hancock C.N., Germany T., Redd P., Timmons J., Lipford J., Burns S., Cervantes-Perez SA., Libault M., Shen W., An Y.C., Kanizay L., Yerka M., Parrott W.A.	Identification and characterization of a temperature sensitive chlorotic soybean mutant.	bioRxiv			2024		
54437	38336294	Bhattarai M., Wang Q., Javaid T., Venkataraghavan A., Al Hassan MT., O'Neill M., Tan L., Chen H., Faik A.	Streamlining assays of glycosyltransferases activity using in&#xa0;vitro GT-array (i-GT-ray) platform: Application to family GT37 fucosyltransferases.	J. Biol. Chem.	300(3)	105734	2024		
54438	38340597	Nguyen D.K., Nguyen T.P., Li Y.R., Ohme-Takagi M., Liu Z.H., Ly T.T., Nguyen V.A., Trinh N.N., Huang H.J.	Comparative study of two indoor microbial volatile pollutants, 2-Methyl-1-butanol and 3-Methyl-1-butanol, on growth and antioxidant system of rice (Oryza sativa) seedlings.	Ecotoxicol. Environ. Saf.	272	116055	2024		
54439	37814777	Chang X., Guo Y., Xie Y., Ren Y., Bi Y., Wang F., Fang Q., Ye G.	Rice volatile compound (E)-&#x3b2;-caryophyllene induced by rice dwarf virus (RDV) attracts the natural enemy Cyrtorhinus lividipennis to prey on RDV insect vectors.	Pest Manag. Sci.	80(2)	874-884	2024		
54440	38314481	Ding C., Shao Z., Yan Y., Zhang G., Zeng D., Zhu L., Hu J., Gao Z., Dong G., Qian Q., Ren D.	Carotenoid isomerase regulates rice tillering and grain productivity by its biosynthesis pathway.	J Integr Plant Biol	66(2)	172-175	2024		
54441	38356259	Liu J., Yin X., Kou C., Thimmappa R., Hua X., Xue Z.	Classification, biosynthesis, and biological functions of triterpene esters in plants.	Plant Commun	5(4)	100845	2024		
54442	38401306	Wang N., He S., Yang B., Zhang H., Liu D., Song P., Chen T., Wang W., Ge H., Ma J.	Crystal structure of HPPD inhibitor sensitive protein from Oryza sativa.	Biochem. Biophys. Res. Commun.	704	149672	2024		
54443	38260561	Yan H., Mendieta J.P., Zhang X., Marand A.P., Liang Y., Luo Z., Minow M.A.A., Roul&#xe9; T., Wagner D., Tu X., Wang Y., Zhong S., Wessler S.R., Schmitz R.J.	Evolution of plant cell-type-specific <i>cis</i> -regulatory elements.	bioRxiv			2024		
54444	38409921	Cao S., Liu B., Wang D., Rasheed A., Xie L., Xia X., He Z.	Orchestrating Seed storage protein and starch accumulation toward overcoming yield-quality trade-off in cereal crops.	J Integr Plant Biol	66(3)	468-483	2024		
54445	38413866	Liu S., Luo S., Yang D., Huang J., Jiang X., Yu S., Fu J., Zhou D., Chen X., He H., Fu H.	Alternative polyadenylation profiles of susceptible and resistant rice (Oryza sativa L.) in response to bacterial leaf blight using RNA-seq.	BMC Plant Biol.	24(1)	145	2024		
54446	38051979	Han Y., Li F., Wu Y., Wang D., Luo G., Wang X., Wang X., Kuang H., Larkin R.M.	PSEUDO-ETIOLATION IN LIGHT proteins reduce greening by binding GLK transcription factors.	Plant Physiol.	194(3)	1722-1744	2024		
54447	38388638	Lei Y., Zhang Y., Xu L., Ma W., Zhou Z., Li J., Quan P., Faruquee M., Yang D., Zhang F., Zhou Y., Quan G., Zhao X., Wang W., Liu B., Li Z., Xu J., Zheng T.	Pedigree genome data of an early-matured Geng/japonica glutinous rice mega variety Longgeng 57.	Sci Data	11(1)	230	2024		
54448	38385754	Son S., Song G., Nam S., Lee G., Im J., Lee K.S., Park Y.J., Suh E.J., Park S.R.	CRISPR/Cas9-mediated mutagenesis of rice NAC transcription factor genes results in altered innate immunity.	Plant Physiol.			2024		
54449	38562039	Chandanshive S., Mathure S., Nadaf A.	Multiple mutations in <i>BADH2</i> gene reveal the novel fragrance allele in indica rice (<i>Oryza sativa L.</i>).	J. Genet.	103		2024		
54450	38044855	Zheng X., Qian Q.	Unveiling a half-century mystery of molecular bases for three-line hybrid rice breeding system.	J Integr Plant Biol	66(1)	3-6	2024		
54451	38172169	Huang L., Tang J., Zhu B., Chen G., Chen L., Bu S., Zhu H., Liu Z., Li Z., Meng L., Liu G., Wang S.	QTL epistasis plays a role of homeostasis on heading date in rice.	Sci Rep	14(1)	373	2024		
54452	38279851	Pal G., Ingole K.D., Yavvari P.S., Verma P., Kumari A., Chauhan C., Chaudhary D., Srivastava A., Bajaj A., Vemanna R.S.	Exogenous application of nanocarrier-mediated double-stranded RNA manipulates physiological traits and defence response against bacterial diseases.	Mol. Plant Pathol.	25(1)	e13417	2024		
54453	38259949	Liang C., Xu H., You H., Zhang O., Han Y., Li Q., Hu Y., Xiang X.	Physicochemical properties and molecular mechanisms of different resistant starch subtypes in rice.	Front Plant Sci	14	1313640	2023		
54454	38590753	Danakumara T., Kumar N., Patil B.S., Kumar T., Bharadwaj C., Jain P.K., Nimmy M.S., Joshi N., Parida S.K., Bindra S., Kole C., Varshney R.K.	Unraveling the genetics of heat tolerance in chickpea landraces (<i>Cicer arietinum</i> L.) using genome-wide association studies.	Front Plant Sci	15	1376381	2024		
54455	38177976	Sun Y., Li Q., Wu M., Wang Q., Zhang D., Gao Y.	Rice PIFs: Critical regulators in rice development and stress response.	Plant Mol. Biol.	114(1)	1	2024		
54456	38562566	Yu B., Geng M., Xue Y., Yu Q., Lu B., Liu M., Shao Y., Li C., Xu J., Li J., Hu W., Tang H., Li P., Liu Q., Jing S.	Combined miRNA and mRNA sequencing reveals the defensive strategies of resistant YHY15 rice against differentially virulent brown planthoppers.	Front Plant Sci	15	1366515	2024		
54457	38255904	Fan Y., Ma L., Pan X., Tian P., Wang W., Liu K., Xiong Z., Li C., Wang Z., Wang J., Zhang H., Bao Y.	Genome-Wide Association Study Identifies Rice Panicle Blast-Resistant Gene <i>Pb4</i> Encoding a Wall-Associated Kinase.	Int J Mol Sci	25(2)		2024	CEBIP,PB4	CEBiP, Os-LYP1, LYP1, OsCEBiP,Pb4, OsPB4
54458	38576786	Zhou C., Jiang W., Guo J., Zhu L., Liu L., Liu S., Chen R., Du B., Huang J.	Genome-wide association study and genomic prediction for resistance to brown planthopper in rice.	Front Plant Sci	15	1373081	2024		
54459	38248334	Tian Y., Chen X., Xu P., Wang Y., Wu X., Wu K., Fu X., Chin Y., Liao Y.	Rapid Visual Detection of Elite Erect Panicle <i>Dense and erect panicle 1</i> Allele for Marker-Assisted Improvement in Rice (<i>Oryza sativa</i> L.) Using the Loop-Mediated Isothermal Amplification Method.	Curr Issues Mol Biol	46(1)	498-512	2024		
54460	38254970	Guo J., Zhou X., Chen D., Chen K., Ye C., Liu J., Liu S., Chen Y., Chen G., Liu C.	Effect of Fat Content on Rice Taste Quality through Transcriptome Analysis.	Genes (Basel)	15(1)		2024		
54461	38356346	Liao Y., Li M., Wu H., Liao Y., Xin J., Yuan X., Li Y., Wei A., Zou X., Guo D., Xue Z., Zhu G., Wang Z., Xu P., Zhang H., Chen X., Du K., Zhou H., Xia D., Ali A., Wu X.	Generation of aroma in three-line hybrid rice through CRISPR/Cas9 editing of BETAINE ALDEHYDE DEHYDROGENASE2 (OsBADH2).	Physiol Plant	176(1)	e14206	2024		
54462	38434426	Wang Q., Gao H., Liu K., Wang H., Zhang F., Wei L., Lu K., Li M., Shi Y., Zhao J., Zhou W., Peng B., Yuan H.	CRISPR/Cas9-mediated enhancement of semi-dwarf glutinous traits in elite Xiangdaowan rice (<i>Oryza sativa</i> L.): targeting <i>sd1</i> and <i>Wx</i> genes for yield and quality improvement.	Front Plant Sci	15	1333191	2024		
54463	38183427	Zhang Q., Chen C., Guo R., Zhu X., Tao X., He M., Li Z., Shen L., Li Q., Ren D., Hu J., Zhu L., Zhang G., Qian Q.	Plasma membrane-localized hexose transporter OsSWEET1b, affects sugar metabolism and leaf senescence.	Plant Cell Rep.	43(1)	29	2024		
54464	38314883	Sun F., Deng Y., Ma X., Liu Y., Zhao L., Yu S., Zhang L.	Structure-based prediction of protein-protein interaction network in rice.	Genet. Mol. Biol.	47(1)	e20230068	2024		
54465	38195408	Zuo G., Huo J., Yang X., Mei W., Zhang R., Khan A., Feng N., Zheng D.	Photosynthetic mechanisms underlying NaCl-induced salinity tolerance in rice (Oryza sativa).	BMC Plant Biol.	24(1)	41	2024		
54466	38193234	Muzaffar A., Chen Y.S., Lee H.T., Wu C.C., Le T.T., Liang J.Z., Lu C.H., Balasubramaniam H., Lo S.F., Yu L.C., Chan C.H., Chen K.T., Lee M.H., Hsing Y.I., Ho T.D., Yu S.M.	A newly evolved rice-specific gene JAUP1 regulates jasmonate biosynthesis and signalling to promote root development and multi-stress tolerance.	Plant Biotechnol. J.	22(5)	1417-1432	2024	JAUP2,JAUP1	OsJAUP2,OsJAUP1
54467	38183902	Chowdhury M.Z.H., Mostofa M.G., Mim M.F., Haque M.A., Karim M.A., Sultana R., Rohman M.M., Bhuiyan A.U., Rupok M.R.B., Islam S.M.N.	The fungal endophyte Metarhizium anisopliae (MetA1) coordinates salt tolerance mechanisms of rice to enhance growth and yield.	Plant Physiol. Biochem.	207	108328	2024		
54468	38203760	He L., Chen T., Liang W., Zhao C., Zhao L., Yao S., Zhou L., Zhu Z., Zhao Q., Lu K., Wang C., Zhu L., Zhang Y.	The RING-Type Domain-Containing Protein GNL44 Is Essential for GRAIN SIZE and Quality in Rice (<i>Oryza sativa</i> L.).	Int J Mol Sci	25(1)		2024	GL3.1,LK3,GW2	OsPPKL1, PPKL1, qGL3, OsPP54, PP54, OsGL3.1, qGL3/OsPPKL1,lk3(t), lk3(t)*, SG3, GS3, SG3-GS3, OsGW3, OsGS3, RGG3/GS3/Mi/OsGGC1, RGG3, Mi, OsGGC1, GGC1, OsSYL3, SYL3, TT2, OsTT2,OsGW2, OsRING429, RING429, GNL44, OsGNL44
54469	38419784	Wang R., Li K., Zhang W., Liu H., Tao Y., Liu Y., Ding G., Yang G., Zhou Y., Wang J., Wu L., Liu B., Mu F.	QTL-seq analysis identified the genomic regions of plant height and days to heading in high-latitude rice.	Front Genet	15	1305681	2024		
54470	38525307	Mitra D., Panneerselvam P., Chidambaranathan P., Nayak A.K., Priyadarshini A., Senapati A., Mohapatra P.K.D.	Strigolactone GR24-mediated mitigation of phosphorus deficiency through mycorrhization in aerobic rice.	Curr Res Microb Sci	6	100229	2024		
54471	38203801	Jiang J., Song S., Hu C., Jing C., Xu Q., Li X., Zhang M., Hai M., Shen J., Zhang Y., Wang D., Dang X.	QTL Detection and Candidate Gene Identification for Eating and Cooking Quality Traits in Rice (<i>Oryza sativa</i> L.) via a Genome-Wide Association Study.	Int J Mol Sci	25(1)		2024		
54472	38660452	Avinash G., Sharma N., Prasad K.R., Kaur R., Singh G., Pagidipala N., Thulasinathan T.	Unveiling the distribution of free and bound phenolic acids, flavonoids, anthocyanins, and proanthocyanidins in pigmented and non-pigmented rice genotypes.	Front Plant Sci	15	1324825	2024		
54473	38495369	Mathur S., Bheemanahalli R., Jumaa S.H., Kakar N., Reddy V.R., Gao W., Reddy K.R.	Impact of ultraviolet-B radiation on early-season morpho-physiological traits of <i>indica</i> and <i>japonica</i> rice genotypes.	Front Plant Sci	15	1369397	2024		
54474	38191812	Lap B., Magudeeswari P., Tyagi W., Rai M.	Genetic analysis of purple pigmentation in rice seed and vegetative parts - implications on developing high-yielding purple rice (Oryza sativa L.).	J. Appl. Genet.	65(2)	241-254	2024		
54475	38197218	Peng G., Liu M., Luo Z., Deng S., Wang Q., Wang M., Chen H., Xiao Y., Zhang Y., Hong H., Zhu L., Liu Z., Zhou L., Wang Y., Zhuang C., Zhou H.	An E3 ubiquitin ligase CSIT2 controls critical sterility-inducing temperature of thermo-sensitive genic male sterile rice.	New Phytol.	241(5)	2059-2074	2024		
54476	38194491	Kariya K., Mori H., Ueno M., Yoshikawa T., Teraishi M., Yabuta Y., Ueno K., Ishihara A.	Identification and evolution of a diterpenoid phytoalexin oryzalactone biosynthetic gene in the genus Oryza.	Plant J.	118(2)	358-372	2024		
54477	38279847	Liu J., Lefevere H., Coussement L., Delaere I., De Meyer T., Demeestere K., H&#xf6;fte M., Gershenzon J., Ullah C., Gheysen G.	The phenylalanine ammonia-lyase inhibitor AIP induces rice defence against the root-knot nematode Meloidogyne graminicola.	Mol. Plant Pathol.	25(1)	e13424	2024		
54478	38259909	Hu H., Bi L., Wang L., Zhan F., Liang X., Qin L., Li Y.	The effects of different iron and phosphorus treatments on the formation and morphology of iron plaque in rice roots (<i>Oryza sativa L</i>).	Front Plant Sci	14	1304505	2023		
54479	38625904	Li F., Yan L., Shen J., Liao S., Ren X., Cheng L., Li Y., Qiu Y.	Fine mapping and breeding application of two brown planthopper resistance genes derived from landrace rice.	PLoS ONE	19(4)	e0297945	2024	BPH46	Bph46, OsBPH46
54480	38348703	Anwar K., Joshi R., Bahuguna R.N., Govindjee G., Sasidharan R., Singla-Pareek SL., Pareek A.	Impact of individual, combined and sequential stress on photosynthesis machinery in rice (Oryza sativa L).	Physiol Plant	176(1)	e14209	2024		
54481	38250450	Haxhari F., Savorani F., Rondanelli M., Cantaluppi E., Campanini L., Magnani E., Simonelli C., Gavoci G., Chiad&#xf2; A., Sozzi M., Cavallini N., Chiodoni A., Gasparri C., Barrile G.C., Cavioni A., Mansueto F., Mazzola G., Moroni A., Patelli Z., Pirola M., Tartara A., Guido D., Perna S., Magnaghi R.	Endosperm structure and Glycemic Index of Japonica Italian rice varieties.	Front Plant Sci	14	1303771	2023		
54482	38254679	Fu R., Zhao L., Chen C., Wang J., Lu D.	Conjunctive Analysis of BSA-Seq and SSR Markers Unveil the Candidate Genes for Resistance to Rice False Smut.	Biomolecules	14(1)		2024		
54483	38362446	Shobade S.O., Zabotina O.A., Nilsen-Hamilton M.	Plant root associated chitinases: structures and functions.	Front Plant Sci	15	1344142	2024	CHT9	Cht9, OsCht9, Cht1, OsChi19A, Chi19A
54484	38495756	Wang Y., Zhao L.M., Feng N., Zheng D., Shen X.F., Zhou H., Jiang W., Du Y., Zhao H., Lu X., Deng P.	Plant growth regulators mitigate oxidative damage to rice seedling roots by NaCl stress.	PeerJ	12	e17068	2024		
54485	38562563	Chen R., Lu H., Wang Y., Tian Q., Zhou C., Wang A., Feng Q., Gong S., Zhao Q., Han B.	High-throughput UAV-based rice panicle detection and genetic mapping of heading-date-related traits.	Front Plant Sci	15	1327507	2024		
54486	38656518	P&#xe9;rez J., Hern&#xe1;ndez-Soto A., Abdelnour-Esquivel A., Vargas-Segura W., Watson-Guido W., Gatica-Arias A.	In Vitro Gamma Mutagenesis Techniques in Rice (Oryza sativa L. var. Lazarroz FL).	Methods Mol. Biol.	2788	243-255	2024		
54487	38390300	Kumar K.P., Pushpam R., Manonmani S., Raveendran M., Santhiya S., Senthil A.	Enhancing stress resilience in rice (<i>Oryza sativa</i> L.) through profiling early-stage morpho-physiological and molecular responses to multiple abiotic stress tolerance.	Front Plant Sci	15	1342441	2024		
54488	38169508	Zhang Z., Guo Y.Y., Wang Y.C., Zhou L., Fan J., Mao Y.C., Yang Y.M., Zhang Y.F., Huang X.H., Zhu J., Zhang C., Yang Z.N.	A point mutation in the meiotic crossover formation gene HEI10/tfs2 leads to thermosensitive genic sterility in rice.	Plant J.	118(2)	506-518	2024		
54489	38128900	Ishida K.	Reciprocal regulation of cellulose and lignin biosynthesis by the transcription factor OsTCP19.	J. Exp. Bot.	75(1)	5-8	2024		
54490	37778812	Yin Y., Li J., Zhu S., Chen Q., Chen C., Rui Y., Shang J.	Effect of biochar application on rice, wheat, and corn seedlings in hydroponic culture.	J Environ Sci (China)	135	379-390	2024		
54491	38172302	Chompa S.S., Zuan A.T.K., Amin A.M., Hun T.G., Ghazali A.H.A., Sadeq B.M., Akter A., Rahman M.E., Rashid H.O.	Growth and protein response of rice plant with plant growth-promoting rhizobacteria inoculations under salt stress conditions.	Int. Microbiol.			2024		
54492	38435852	Kumari A., Sharma P., Rani M., Laxmi V., Sahil, Sahi C., Satturu V., Katiyar-Agarwal S., Agarwal M.	Meta-QTL and ortho analysis unravels the genetic architecture and key candidate genes for cold tolerance at seedling stage in rice.	Physiol Mol Biol Plants	30(1)	93-108	2024		
54493	37778787	Huang Y., Yi J., Li X., Li F.	Transcriptomics and physiological analyses reveal that sulfur alleviates mercury toxicity in rice (Oryza sativa L.).	J Environ Sci (China)	135	10-25	2024		
54494	38192056	Zhao T., Tang P., Liu C., Zuo R., Su S., Zhong Y., Li Y., Yang J.	Multi-Omics Approach Reveals <i>OsPIL1</i> as a Regulator Promotes Rice Growth, Grain Development, and Blast Resistance.	J. Agric. Food Chem.	72(3)	1822-1843	2024		
54495	38344182	Lei Y., Ma Q., Zhang Y., Li J., Ning X., Wang Y., Ge X., Zhao H., Lin H.	Functional dissection of Phytochrome A in plants.	Front Plant Sci	15	1340260	2024	EF1,GHD7,HD2,RFT1,GI,PHYB,PHYA	Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,Ghd2, Ghd7, OsGhd7, OsCCT26, OsCMF8, OsI, Ghd7/Hd4, Hd4, EH7-1/Hd4, Ghd7-0a, EH7-1, EH7/Ghd7, EH7, OsEH7, GLW7.1, OsGLW7.1,Hd2(t), Hd2, qHD2(t), OsPRR37, Os-PRR37, PRR37, Prr4, OsPRR4, DTH7, Os DTH7, OsCCT28, CCT28, Ghd7.1, PRR37/Hd2, EH7-2, EH7-2/Hd2, Hd2/PRR37, PRR37-1a, PRR37-1b, PRR37-1c, PRR37-2a, PRR37- 2, HD7.2,FT-L 3, OsFTL3, FTL3, FT-L3, RFT, OsRFT1,OsGI, Gi, Os-GI,phyB, PHYB1, OsPHYB, OsphyB, OsYHB, YHB, OsPHYB/OsYHB,phyA, PHYA* (phyA), PHYA*, Phya, PHY18, phy 18, OsPHYA 
54496	38635807	Shamshad A., Rashid M., Hameed A., Imran Arshad HM.	Identification of biochemical indices for brown spot (Bipolaris oryzae) disease resistance in rice mutants and hybrids.	PLoS ONE	19(4)	e0300760	2024		
54497	38241319	Debsharma S.K., Rahman M.A., Khatun M., Disha R.F., Jahan N., Quddus M.R., Khatun H., Dipti S.S., Ibrahim M., Iftekharuddaula K.M., Kabir M.S.	Developing climate-resilient rice varieties (BRRI dhan97 and BRRI dhan99) suitable for salt-stress environments in Bangladesh.	PLoS ONE	19(1)	e0294573	2024		
54498	38567126	Wang H., Jia Y., Bai X., Wang J., Liu G., Wang H., Wu Y., Xin J., Ma H., Liu Z., Zou D., Zhao H.	Whole-transcriptome profiling and identification of cold tolerance-related ceRNA networks in <i>japonica</i> rice varieties.	Front Plant Sci	15	1260591	2024		
54499	38366198	Liu H.B., Sun H.X., Du L.Q., Jiang L.L., Zhang L.A., Qi Y.Y., Cai J., Yu F.	Rice receptor kinase flr7 regulates rhizosphere oxygen levels and enriches the dominant Anaeromyxobacter that improves submergence tolerance in rice.	ISME J	18(1)		2024		
54500	38633460	He L., Liu P., Mei L., Luo H., Ban T., Chen X., Ma B.	disease resistance features of the executor <i>R</i> gene <i>Xa7</i> reveal novel insights into the interaction between rice and <i>Xanthomonas oryzae</i> pv. <i>oryzae</i>.	Front Plant Sci	15	1365989	2024		
54501	38650645	Meng F., Feng N., Zheng D., Liu M., Zhou H., Zhang R., Huang X., Huang A.	Exogenous Hemin enhances the antioxidant defense system of rice by regulating the AsA-GSH cycle under NaCl stress.	PeerJ	12	e17219	2024		
54502	38571713	Zhang D., Zhao R., Xian G., Kou Y., Ma W.	A new model construction based on the knowledge graph for mining elite polyphenotype genes in crops.	Front Plant Sci	15	1361716	2024		
54503	38270739	Wu L., Wang R., Li M., Du Z., Jin Y., Shi Y., Jiang W., Chen J., Jiao Y., Hu B., Huang J.	Functional analysis of a rice 12-oxo-phytodienoic acid reductase gene (OsOPR1) involved in Cd stress tolerance.	Mol. Biol. Rep.	51(1)	198	2024		
54504	38338798	Kean-Galeno T., Lopez-Arredondo D., Herrera-Estrella L.	The shoot apical meristem: An Evolutionary Molding of Higher Plants.	Int J Mol Sci	25(3)		2024		
54505	38298743	Zhao X., Xu Z., Chen Y., Du Y., Li M., Huang B., Ge Y., Gu M., Tang S., Liu Q., Zhang H.	Development of introgression lines and mapping of <i>qGW2</i>, a novel QTL that confers grain width, in rice (<i>Oryza sativa</i> L.).	Mol. Breed.	44(2)	10	2024		
54506	38268986	Dhiman V., Biswas S., Shekhawat R.S., Sadhukhan A., Yadav P.	In silico characterization of five novel disease-resistance proteins in <i>Oryza sativa</i> sp. <i>japonica</i> against bacterial leaf blight and rice blast diseases.	3 Biotech	14(2)	48	2024		
54507	38290344	Wang Y.J., Dong C.Y., Tang Z., Zhao F.J.	Translocation, enzymatic reduction and toxicity of dimethylarsenate in rice.	Plant Physiol. Biochem.	207	108393	2024		
54508	38261531	Javaid T., Bhattarai M., Venkataraghavan A., Held M., Faik A.	Specific protein interactions between rice members of the GT43 and GT47 families form various central cores of putative xylan synthase complexes.	Plant J.			2024	GT47-1	OsGT47-1
54509	38337906	Yang H.H., Wang Y.X., Xiao J., Jia Y.F., Liu F., Wang W.X., Wei Q., Lai F.X., Fu Q., Wan P.J.	Defense Regulatory Network Associated with circRNA in Rice in Response to Brown Planthopper Infestation.	Plants (Basel)	13(3)		2024		
54510	38258636	LE Q., Huang Z., Dai R., Li S., Li M., Fang Y., Wang Y., Rao Y.	[Mapping of QTL associated with rice cooking quality and candidate gene analysis].	Sheng Wu Gong Cheng Xue Bao	40(1)	122-136	2024		
54511	38282386	Li C., He Y.Q., Yu J., Kong J.R., Ruan C.C., Yang Z.K., Zhuang J.J., Wang Y.X., Xu J.H.	The rice LATE ELONGATED HYPOCOTYL enhances salt tolerance by regulating Na+/K+ homeostasis and ABA signalling.	Plant Cell Environ.	47(5)	1625-1639	2024		
54512	38245899	Zhu M., Liu Y., Jiao G., Yu J., Zhao R., Lu A., Zhou W., Cao N., Wu J., Hu S., Sheng Z., Wei X., Zhao F., Xie L., Ahmad S., Lin Y., Shao G., Tang S., Hu P.	The elite eating quality alleles Wxb and ALKb are regulated by OsDOF18 and coordinately improve head rice yield.	Plant Biotechnol. J.			2024		
54513	38371332	Padmavathi G., Bangale U., Rao K.N., Balakrishnan D., Arun M.N., Singh R.K., Sundaram R.M.	Progress and prospects in harnessing wild relatives for genetic enhancement of salt tolerance in rice.	Front Plant Sci	14	1253726	2023		
54514	38251320	Hu S., Du B., Mu G., Jiang Z., Li H., Song Y., Zhang B., Xia J., Rouached H., Zheng L.	The transcription factor OsbZIP48 governs rice responses to zinc deficiency.	Plant Cell Environ.	47(5)	1526-1542	2024		
54515	38337902	Trotti J., Trapani I., Gulino F., Aceto M., Minio M., Gerotto C., Mica E., Val&#xe8; G., Barbato R., Pagliano C.	Physiological Responses to Salt Stress at the Seedling Stage in Wild (<i>Oryza rufipogon</i> Griff.) and Cultivated (<i>Oryza sativa</i> L.) Rice.	Plants (Basel)	13(3)		2024		
54516	38273959	Sachdeva S., Singh R., Maurya A., Singh V.K., Singh U.M., Kumar A., Singh G.P.	Multi-model genome-wide association studies for appearance quality in rice.	Front Plant Sci	14	1304388	2023		
54517	38212943	Tanaka N., Yoshida S., Islam M.S., Yamazaki K., Fujiwara T., Ohmori Y.	OsbZIP1 regulates phosphorus uptake and nitrogen utilization, contributing to improved yield.	Plant J.	118(1)	159-170	2024		
54518	38218102	Adhikari A., Kwon E.H., Khan M.A., Shaffique S., Kang S.M., Lee I.J.	Enhanced use of chemical fertilizers and mitigation of heavy metal toxicity using biochar and the soil fungus Bipolaris maydis AF7 in rice: Genomic and metabolomic perspectives.	Ecotoxicol. Environ. Saf.	271	115938	2024		
54519	38108117	Liang X., Li J., Yang Y., Jiang C., Guo Y.	Designing salt stress-resilient crops: Current progress and future challenges.	J Integr Plant Biol	66(3)	303-329	2024		
54520	38229011	Zhang Y., He Z., Xing P., Luo H., Yan Z., Tang X.	Effects of paclobutrazol seed priming on seedling quality, photosynthesis, and physiological characteristics of fragrant rice.	BMC Plant Biol.	24(1)	53	2024		
54521	38237420	Kumar S., Chakraborty S., Chakraborty N.	Dehydration-responsive cytoskeleton proteome of rice reveals reprograming of key molecular pathways to mediate metabolic adaptation and cell survival.	Plant Physiol. Biochem.	207	108359	2024		
54522	38276774	Liu Y., Jiang Y., Zhong X., Li C., Xu Y., Zhu K., Wang W., Gu J., Zhang H., Wang Z., Liu L., Zhang J., Zhang W., Yang J.	Exogenous Spermidine and Amino-Ethoxyvinylglycine Improve Nutritional Quality via Increasing Amino Acids in Rice Grains.	Plants (Basel)	13(2)		2024		
54523	38227151	Daryani P., Amirbakhtiar N., Soorni J., Loni F., Darzi Ramandi H., Shobbar Z.S.	Uncovering the Genomic Regions Associated with Yield Maintenance in Rice Under Drought Stress Using an Integrated Meta-Analysis Approach.	Rice (N Y)	17(1)	7	2024		
54524	38237589	Shen S.Y., Ma M., Bai C., Wang W.Q., Zhu R.B., Gao Q., Song X.J.	Optimizing rice grain size.by attenuating phosphorylation-triggered functional impairment of a chromatin modifier ternary complex.	Dev. Cell	59(4)	448-464.e8	2024	HHC3,HHC7,NAA15,GNAT2	OsHHC3,OsHHC7,OsNAA15, HHC4, OsHHC4,OsGNAT2, HHC2, OsHHC2
54525	38261843	Wang P., Ma L., Li D., Zhang B., Zhou T., Zhou X., Xing Y.	Fine mapping of the panicle length QTL <i>qPL5</i> in rice.	Mol. Breed.	44(2)	6	2024	FAR1	OsFAR1
54526	38298608	Mart&#xed;n-Cardoso H., Bund&#xf3; M., Val-Torregrosa B., San Segundo B.	Phosphate accumulation in rice leaves promotes fungal pathogenicity and represses host immune responses during pathogen infection.	Front Plant Sci	14	1330349	2023		
54527	38233741	Lu L., Chen X., Chen J., Zhang Z., Zhang Z., Sun Y., Wang Y., Xie S., Ma Y., Song Y., Zeng R.	MicroRNA-encoded regulatory peptides modulate cadmium tolerance and accumulation in rice.	Plant Cell Environ.	47(5)	1452-1470	2024		
54528	38254994	Sowadan O., Xu S., Li Y., Muleke E.M., Sitoe H.M., Dang X., Jiang J., Dong H., Hong D.	Genome-Wide Association Analysis Unravels New Quantitative Trait Loci (QTLs) for Eight Lodging Resistance Constituent Traits in Rice (<i>Oryza sativa</i> L.).	Genes (Basel)	15(1)		2024		
54529	38281341	Kumar S., Sharma N., Sopory S.K., Sanan-Mishra N.	miRNAs and genes as molecular regulators of rice grain morphology and yield.	Plant Physiol. Biochem.	207	108363	2024		
54530	37986220	Gupta P., Elser J., Hooks E., D'Eustachio P., Jaiswal P., Naithani S.	Plant Reactome Knowledgebase: empowering plant pathway exploration and OMICS data analysis.	Nucleic Acids Res.	52(D1)	D1538-D1547	2024		
54531	38185771	Yang W., Chen S., Hao Q., Zhu H., Tan Q., Lin S., Chen G., Li Z., Bu S., Liu Z., Liu G., Wang S., Zhang G.	Pyramiding of Low Chalkiness QTLs Is an Effective Way to Reduce Rice Chalkiness.	Rice (N Y)	17(1)	4	2024		
54532	38656519	Rojas-V&#xe1;squez R., Hern&#xe1;ndez-Soto A., Arrieta-Espinoza G., Gatica-Arias A.	CRISPR/Cas9-Mediated Genome Editing in Indica Rice (Oryza sativa L. subsp. indica var. CR-5272).	Methods Mol. Biol.	2788	257-271	2024		
54533	38366694	Liu Q., Zhang Z., Bai C., Li Y., Yin X., Lin W., Yao L.	Disturbed nutrient accumulation and cell wall metabolism in panicles are responsible for rice straighthead disease.	Physiol Plant	176(1)	e14214	2024		
54534	38203805	Huang R., Feng Y., Gao Z., Ahmed A., Zhang W.	The Epigenomic Features and Potential Functions of PEG- and PDS-Favorable DNA G-Quadruplexes in Rice.	Int J Mol Sci	25(1)		2024		
54535	38174365	Zhu L., Li F., Xie T., Li Z., Tian T., An X., Wei X., Long Y., Jiao Z., Wan X.	Receptor-like kinases and their signaling cascades for plant male fertility: loyal messengers.	New Phytol.	241(4)	1421-1434	2024		
54536	38650702	Shivute F.N., Zhong Y., Wu J., Bao Y., Wang W., Liu X., Lu Z., Yu H.	Genome-wide and pan-genomic analysis reveals rich variants of NBS-LRR genes in a newly developed wild rice line from <i>Oryza alta</i> Swallen.	Front Plant Sci	15	1345708	2024		
54537	38222975	Zhang Z., Zhao P., Wang X., Wang H., Zhai Z., Zhao X., Xing L., Qi Z., Shang Y.	Identification and map-based cloning of long glume mutant gene <i>Lgm1</i> in barley.	Mol. Breed.	44(1)	3	2024		
54538	38170415	Zhu Y., Su H., Liu X.X., Sun J.F., Xiang L., Liu Y.J., Hu Z.W., Xiong X.Y., Yang X.M., Bhutto S.H., Li G.B., Peng Y.Y., Wang H., Shen X., Zhao Z.X., Zhang J.W., Huang Y.Y., Fan J., Wang W.M., Li Y.	Identification of NADPH Oxidase Genes Crucial for Rice Multiple disease resistance and Yield Traits.	Rice (N Y)	17(1)	1	2024		
54539	38195907	Guo M., Ruan W., Li R., Xu L., Hani S., Zhang Q., David P., Ren J., Zheng B., Nussaume L., Yi K.	Visualizing plant intracellular inorganic orthophosphate distribution.	Nat Plants	10(2)	315-326	2024		
54540	37970747	Ren D., Liu H., Sun X., Zhang F., Jiang L., Wang Y., Jiang N., Yan P., Cui J., Yang J., Li Z., Lu P., Luo X.	Post-transcriptional regulation of grain weight and shape by the RBP-A-J-K complex in rice.	J Integr Plant Biol	66(1)	66-85	2024	RBPK,RBPJ,GL11	OSRBPK, RBP-K, OsRBP-K,OSRBPJ, RBP-J, OsRBP-J,OsGL11, RBPA, OsRBPA, RBP-A, OsRBP-A
54541	38481398	Alam S., Sundaram K.T., Singh U.M., Srinivas Prasad M., Laha G.S., Sinha P., Singh V.K.	Superior haplotypes towards the development of blast and bacterial blight-resistant rice.	Front Plant Sci	15	1272326	2024		
54542	38227608	Anwaar S., Jabeen N., Ahmad K.S., Shafique S., Irum S., Ismail H., Khan S.U., Tahir A., Mehmood N., Gleason M.L.	Cloning of maize chitinase 1 gene and its expression in genetically transformed rice to confer resistance against rice blast caused by Pyricularia oryzae.	PLoS ONE	19(1)	e0291939	2024		
54543	38253937	Guo Z., Wang S., Zhang F., Xiang D., Yang J., Li D., Bai B., Dai M., Luo J., Xiong L.	Common and specific genetic basis of metabolite-mediated drought responses in rice.	Stress Biol	4(1)	6	2024		
54544	38281573	Zhang X., Chen J., Wang W., Zhu L.	Photosynthetic mechanisms of carbon fixation reduction in rice by cadmium and polycyclic aromatic hydrocarbons.	Environ. Pollut.	344	123436	2024		
54545	38304382	Yun P., Zhang C., Ma T., Xia J., Zhou K., Wang Y., Li Z.	Identification of <i>qGL4.1</i> and <i>qGL4.2</i>, two closely linked QTL controlling grain length in rice.	Mol. Breed.	44(2)	11	2024		
54546	38262942	Choudhury S.	Computational analysis of the AP2/ERF family in crops genome.	BMC Genomics	25(1)	102	2024		
54547	38338776	Wu W., Zhang T.T., You L.L., Wang Z.Y., Du S.Q., Song H.Y., Wang Z.H., Huang Y.J., Liao J.L.	The QTL and Candidate Genes Regulating the Early Tillering Vigor Traits of Late-Season Rice in Double-Cropping Systems.	Int J Mol Sci	25(3)		2024		
54548	38494249	Mahapatra K.	Unveiling the structure and interactions of SOG1, a NAC domain transcription factor: An in-silico perspective.	J Genet Eng Biotechnol	22(1)	100333	2024		
54549	38327661	Rezk A.A., Mohamed H.I., El-Beltagi HS.	Genetic variability and diversity analysis in <i>Oryza sativa</i> L. genotypes using quantitative traits and SSR markers.	Saudi J Biol Sci	31(3)	103944	2024		
54550	38266716	Imran A., Ghosh A.	Evolutionary expansion, functional diversification, and transcript profiling of plant Glutathione Peroxidases.	Plant Sci.	341	111991	2024		
54551	38337949	Barrera M., Olmedo B., Z&#xfa;&#xf1;iga C., Cepeda M., Olivares F., Vergara R., Cordero-Lara K., Prieto H.	Somatic Embryogenesis and <i>Agrobacterium</i>-Mediated Gene Transfer Procedures in Chilean Temperate Japonica Rice Varieties for Precision Breeding.	Plants (Basel)	13(3)		2024		
54552	38213029	Ying J., Qin Y., Zhang F., Duan L., Cheng P., Yin M., Wang Y., Tong X., Huang J., Li Z., Song X., Zhang J.	A weak allele of TGW5 enables greater seed propagation and efficient size-based seed sorting for hybrid rice production.	Plant Commun	5(4)	100811	2024	D1	d1, GPA1, GA1, OsGA1, RGA1, dwf1, XA7, RGA, D1/RGA1, D89, TGW5, OsTGW5, SRG5, OsSRG5
54553	38217286	Ma G., Yan F., Ren B., Lu Z., Xu H., Wu F., Li S., Wang D., Zhou X., Zhou H.	LbCas12a-nuclease-mediated tiling deletion for large-scale targeted editing of non-coding regions in rice.	Plant Commun	5(4)	100815	2024		
54554	38236415	Niu J., Wang F., Yang C., Ye Q., Huang J., La Y., Wang Q., Dai J., Hu T., Sang L., Zhang P., Zou Y., Zhai Z., Jin J., Abdulmajid D., Guo J., Chen H., La H.	Identification of Increased Grain Length 1 (IGL1), a novel gene encoded by a major QTL for modulating grain length in rice.	Theor. Appl. Genet.	137(1)	24	2024		
54555	37930817	Kubo T., Yamagata Y., Matsusaka H., Toyoda A., Sato Y., Kumamaru T.	MiRiQ database: A Platform for&#xa0;In Silico Rice Mutant Screening.	Plant Cell Physiol.	65(1)	169-174	2024		
54556	38255003	Karimian P., Trusov Y., Botella J.R.	Conserved Role of Heterotrimeric G Proteins in Plant Defense and Cell Death Progression.	Genes (Basel)	15(1)		2024		
54557	38256843	Mabreja A.D., Reyes V.P., Soe T.K., Shimakawa K., Makihara D., Nishiuchi S., Doi K.	Evaluation of Grain-Filling-Related Traits Using Taichung 65 x DV85 Chromosome Segment Substitution Lines (TD-CSSLs) of Rice.	Plants (Basel)	13(2)		2024		
54558	38068696	Sun J., Yu X., Xu H., Yang Y., Liu M., Zhang Y., Lu Y., Tang W.	Post-Emergence Water-Dispersal Application Provides Equal Herbicidal Activity against <i>Echinochloa crus-galli</i> and Rice Safety as Foliar Spraying of Penoxsulam.	Plants (Basel)	12(23)		2023		
54559	38053501	Xu Z., Liu H., Yu Y., Gao D., Leng C., Zhang S., Yan P.	MWCNTs Alleviated saline-alkali stress by optimizing photosynthesis and sucrose metabolism in rice seedling.	Plant Signal Behav	18(1)	2283357	2023		
54560	38070179	Kabade P.G., Dixit S., Singh U.M., Alam S., Bhosale S., Kumar S., Singh S.K., Badri J., Varma N.R.G., Chetia S., Singh R., Pradhan S.K., Banerjee S., Deshmukh R., Singh S.P., Kalia S., Sharma T.R., Singh S., Bhardwaj H., Kohli A., Kumar A., Sinha P., Singh V.K.	SpeedFlower: a comprehensive speed breeding protocol for indica and japonica rice.	Plant Biotechnol. J.	22(5)	1051-1066	2024		
54561	38053337	Li W., Liu J., Li Z., Ye R., Chen W., Huang Y., Yuan Y., Zhang Y., Hu H., Zheng P., Fang Z., Tao Z., Song S., Pan R., Zhang J., Tu J., Sheen J., Du H.	Mitigating growth-stress tradeoffs via elevated TOR signaling in rice.	Mol Plant	17(2)	240-257	2024		
54562	37948977	Shang G., Meng Z., Qinyue Z., Feng X., Zhang W.	Effects of exogenous zinc (ZnSO4&#xb7;7H2O) on photosynthetic characteristics and grain quality of hybrid rice.	Plant Physiol. Biochem.	205	108049	2023		
54563	38137000	Wen X., Li J., Yang F., Zhang X., Li Y.	Exploring the Effect of High-Energy Heavy Ion Beam on Rice Genome: Transposon Activation.	Genes (Basel)	14(12)		2023		
54564	38015011	Wang C.L., Luo P.Q., Hu F.Y., Li Y., Sung C.L., Kuang Y.H., Lin S.C., Yang Z.W., Li C.P., Huang S.H., Hechanova S.L., Jena K.K., Hsieh C.H., Chuang W.P.	Pyramiding BPH genes in rice maintains resistance against the brown planthopper under climate change.	Pest Manag. Sci.	80(4)	1740-1750	2024		
54565	38057725	Liu X., Zhong X., Liao J., Ji P., Yang J., Cao Z., Duan X., Xiong J., Wang Y., Xu C., Yang H., Peng B., Jiang K.	Exogenous abscisic acid improves grain filling capacity under heat stress by enhancing antioxidative defense capability in rice.	BMC Plant Biol.	23(1)	619	2023		
54566	38059164	Alam M., Wang Y., Chen J., Lou G., Yang H., Zhou Y., Luitel S., Jiang G., He Y.	QTL detection for rice grain storage protein content and genetic effect verifications.	Mol. Breed.	43(12)	89	2023		
54567	37986434	Oliveira MEAS., Ribeiro da Silva Lima L., Santos M.C.B., Ferrari Fonseca de Sales N., Ferreira R.M., Cameron L.C., Filho J.M.C., Bassinello P.Z., Wanderlei Piler de Carvalho C., Ferreira M.S.L., Takeiti C.Y.	Role of short germination and milling on physical properties, amino acid and metabolomic profiles of high amylose rice fractions.	Food Res. Int.	174(Pt 1)	113556	2023		
54568	38139135	Deng K., Zhang H., Wu J., Zhao Z., Wang D., Xu G., Yu J., Ling Y., Zhao F.	Development of Single-Segment Substitution Lines and Fine-Mapping of <i>qSPP4</i> for Spikelets Per Panicle and <i>qGW9</i> for Grain Width Based on Rice Dual-Segment Substitution Line Z783.	Int J Mol Sci	24(24)		2023		
54569	38137008	Dong Z., Guo L., Li X., Li Y., Liu W., Chen Z., Liu L., Liu Z., Guo Y., Pan X.	Genome-Wide Association Study of Arsenic Accumulation in Polished Rice.	Genes (Basel)	14(12)		2023		
54570	38068698	Deng J., Sheng T., Zhong X., Ye J., Wang C., Huang L., Tian X., Liu K., Zhang Y.	Delayed leaf senescence Improves Radiation Use Efficiency and Explains Yield Advantage of Large panicle-type Hybrid Rice.	Plants (Basel)	12(23)		2023		
54571	37589249	Mbanjo E.G.N., Pasion E.A., Jones H., Carandang S., Misra G., Ignacio J.C., Kretzschmar T., Sreenivasulu N., Boyd L.A.	Unravelling marker trait associations linking nutritional value with pigmentation in rice seed.	Plant Genome	16(4)	e20360	2023		
54572	38076110	Islam S.M.M., Gaihre Y.K., Islam M.R., Islam A., Singh U., Sander B.O.	Effects of integrated plant nutrition systems with fertilizer deep placement on rice yields and nitrogen use efficiency under different irrigation regimes.	Heliyon	9(12)	e23110	2023		
54573	38154578	Singh K., Sharma D., Bhagat P.K., Tayyeba S., Noryang S., Sinha A.K.	Phosphorylation of AGO1a by MAP kinases is required for miRNA mediated resistance against Xanthomonas oryzae pv. oryzae infection in rice.	Plant Sci.	340	111967	2024		
54574	38101321	Ju X.Y., Gan S., Yang K.X., Xu Q.B., Dai W.W., Yangchen Y.T., Zhang J., Wang Y.N., Li R.P., Yuan B.	Characterization of a Novel Polysaccharide Derived from Rhizospheric <i>Paecilomyces vaniformisi</i> and Its Mechanism for Enhancing Salinity Resistance in Rice Seedlings.	J. Agric. Food Chem.	71(51)	20585-20601	2023		
54575	38169224	Gupta R., Min C.W., Cho J.H., Jung J.Y., Jeon J.S., Kim Y.J., Kim J.K., Kim S.T.	Integrated "-omics" analysis highlights the role of brassinosteroid signaling and antioxidant machinery underlying improved rice seed longevity during artificial aging treatment.	Plant Physiol. Biochem.	206	108308	2024		
54576	38248941	Xue M., Hou X., Gu G., Dong J., Yang Y., Pan X., Zhang X., Xu D., Lai D., Zhou L.	Activation of Ustilaginoidin Biosynthesis Gene <i>uvpks1</i> in <i>Villosiclava virens</i> Albino Strain LN02 Influences Development, Stress Responses, and Inhibition of Rice Seed Germination.	J Fungi (Basel)	10(1)		2023		
54577	38202400	Zhao Y., Zha M., Xu C., Hou F., Wang Y.	Proteomic Analysis Revealed the Antagonistic Effect of Decapitation and Strigolactones on the Tillering Control in Rice.	Plants (Basel)	13(1)		2023		
54578	38159549	Kumar A., Verma K., Kashyap R., Joshi V.J., Sircar D., Yadav S.R.	Auxin-responsive ROS homeostasis genes display dynamic expression pattern during rice crown root primordia morphogenesis.	Plant Physiol. Biochem.	206	108307	2024		
54579	38160258	Xu Z., Qu M., Shi C., Zhang H., Chen W., Qian H., Zhang Z., Qiu J., Qian Q., Shang L.	The MRE11-ATM-SOG1 DNA damage signaling pathway confers rice immunity to Xanthomonas oryzae.	Plant Commun	5(4)	100789	2024		
54580	38248943	Zhu J., Xue X., Ju R., Zhao J., Liu F., Han X., Yan Y., Wang Y., Feng Z., Lin D., Chen Z., Wang Y., Chen X., Chu C., Zuo S., Zhang Y.	Ectopic Expression of <i>Gastrodia</i> Antifungal Protein in Rice Enhances Resistance to Rice Sheath Blight Disease.	J Fungi (Basel)	10(1)		2023		
54581	38162741	Turino Mattos ML., Valgas R.A., Martins JFDS.	Coinoculation with Growth-Promoting Bacteria Increases the Efficiency of Nitrogen Use by Irrigated Rice.	ACS Omega	8(51)	48719-48727	2023		
54582	38142517	Ji J., Zhang J., Wang X., Song W., Ma B., Wang R., Li T., Wang G., Guan C., Gao X.	The alleviation of salt stress on rice through increasing photosynthetic capacity, maintaining redox homeostasis and regulating soil enzyme activities by Enterobacter sp. JIV1 assisted with putrescine.	Microbiol. Res.	280	127590	2024		
54583	38100516	Wu M., Musazade E., Yang X., Yin L., Zhao Z., Zhang Y., Lu J., Guo L.	ATL Protein Family: Novel Regulators in Plant Response to Environmental Stresses.	J. Agric. Food Chem.	71(51)	20419-20440	2023		
54584	38150036	Gan P., Luo X., Wei H., Hu Y., Li R., Luo J.	Identification of hub genes that variate the qCSS12-mediated cold tolerance between indica and japonica rice using WGCNA.	Plant Cell Rep.	43(1)	24	2023		
54585	38276021	Huang Q., Chen C., Wu X., Qin Y., Tan X., Zhang D., Liu Y., Li W., Chen Y.	Overexpression of ATP Synthase Subunit Beta (Atp2) Confers Enhanced Blast Disease Resistance in Transgenic Rice.	J Fungi (Basel)	10(1)		2023		
54586	38203556	Deng Z., Lai C., Zhang J., Sun F., Li D., Hao P., Shentu X., Pang K., Yu X.	Effects of Secondary Metabolites of Rice on Brown Planthopper and Its Symbionts.	Int J Mol Sci	25(1)		2023		
54587	38127834	Fang J., Peng Y., Zheng L., He C., Peng S., Huang Y., Wang L., Liu H., Feng G.	Chitosan-Se Engineered Nanomaterial Mitigates Salt Stress in Plants by Scavenging Reactive Oxygen Species.	J. Agric. Food Chem.	72(1)	176-188	2024		
54588	37660866	Feng Y.X., Lin Y.J., Tian P., Yu X.Z.	Proline interacts with Ca2+-dependent signaling to enhance chromium tolerance in rice by manipulating nitrate reductase and sucrose phosphate synthase.	Int. J. Biol. Macromol.	253(Pt 1)	126655	2023		
54589	38135798	Hu C.C., Wu C.Y., Yang M.Y., Huang J.Z., Wu C.W., Hong C.Y.	Catalase associated with antagonistic changes of abscisic acid and gibberellin response, biosynthesis and catabolism is involved in eugenol-inhibited seed germination in rice.	Plant Cell Rep.	43(1)	10	2023		
54590	38202369	Vishwakarma C., Krishna G.K., Kapoor R.T., Mathur K., Dalal M., Singh N.K., Mohapatra T., Chinnusamy V.	Physiological Analysis of Source-Sink Relationship in Rice Genotypes with Contrasting Grain Yields.	Plants (Basel)	13(1)		2023		
54591	36855265	Wang J.Y., Braguy J., Al-Babili S.	Does zaxinone counteract strigolactones in shaping rice architecture?	Plant Signal Behav	18(1)	2184127	2023		
54592	38130080	Ge P., Lu H., Wang W., Ma Y., Li Y., Zhou T., Wei T., Wu J., Cui F.	Plasmodesmata-associated Flotillin positively regulates broad-spectrum virus cell-to-cell trafficking.	Plant Biotechnol. J.	22(5)	1387-1401	2024	BG1,BG14,BGL6,CALS8,FLOT2,GSL1,GNS9,FLOT1,GSL9,GSL5,GSL10,GSL4,BG3,G4,BG11,GSL2,BG7,BG13,GSL3,GSL8,GSL6,BG5,BG8,FLOT3	OsBG1,OsBG14,OsBGL6, BG6, OsBG6,CalS8, OsCalS8,OsFLOT2,OsGSL1, CalS10, OsCalS10,Gns9, OsGns9, OsPR8a, PR8a, OsBGL12, BGL12, BG12, OsBG12,OsFLOT1,OsGSL9, CalS7-2, OsCalS7-2,OsGSL5, OsSTA170, CalS5, OsCalS5,OsGSL10, CalS3-2, OsCalS3-2,OsGSL4, CalS7, OsCalS7,PR2, OsPR2, OsBG3,OsG4, BG4, OsBG4,OsBG11,OsGSL2, CalS12-2, OsCalS12-2,OsBG7,OsBG13,OsGSL3, CalS12, OsCalS12,OsGSL8, OsGSC, GSC, CRR1, OsCRR1, CalS9, OsCalS9,OsGSL6, CalS3, OsCalS3,OsBG5,OsBG8,OsFLOT3
54593	38203568	Yang X., Zhang Z., Wu L., Yang M., Li S., Gao J.	Conserved Residues Lys64 and Glu78 at the Subunit Surface of Tau Glutathione Transferase in Rice Affect Structure and Enzymatic Properties.	Int J Mol Sci	25(1)		2023		
54594	38155162	Li J., Zhou J., Xu P., Yang Y., Deng X., Deng W., Zhang Y., Lv Y., Pu Q., Tao D.	Improving bridge effect to overcome interspecific hybrid sterility by pyramiding hybrid sterile loci from Oryza glaberrima.	Sci Rep	13(1)	23057	2023		
54595	38248456	Sun L.X., Li N., Yuan Y., Wang Y., Lu B.R.	Reduced Carbon Dioxide by Overexpressing <i>EPSPS</i> Transgene in Arabidopsis and Rice: Implications in Carbon Neutrality through Genetically Engineered Plants.	Biology (Basel)	13(1)		2023		
54596	38158302	Isidra-Arellano MC., Singh J., Vald&#xe9;s-L&#xf3;pez O.	Unraveling the potential of the strigolactones-NSP1/NSP2 friendship in crop improvement.	Trends Plant Sci.			2023		
54597	38088480	Li Z., Bai H., Bai Z., Han J., Luo D., Bai L.	Multi-omics analysis identifies EcCS4 is negatively regulated in response to phytotoxin isovaleric acid stress in Echinochloa crus-galli.	Pest Manag. Sci.	80(4)	1957-1967	2024		
54598	38127636	Yu W., He J., Wu J., Xu Z., Lai F., Zhong X., Zhang M., Ji H., Fu Q., Zhou X., Peng Y.	Resistance to Planthoppers and Southern Rice Black-streaked Dwarf Virus in Rice Germplasms.	Plant Dis.			2023		
54599	38162313	Schl&#xe4;ppi MR., Jessel A.R., Jackson A.K., Phan H., Jia M.H., Edwards J.D., Eizenga G.C.	Navigating rice seedling cold resilience: QTL mapping in two inbred line populations and the search for genes.	Front Plant Sci	14	1303651	2023		
54600	38099942	Seck F., Covarrubias-Pazaran G., Gueye T., Bartholom&#xe9; J.	Realized Genetic Gain in Rice: Achievements from Breeding Programs.	Rice (N Y)	16(1)	61	2023		
54601	38009289	Li H., Deng L., Weng L., Li J., Hu W., Yu J., Xiao Y., Xiao G.	Cell wall-localized Bt protein endows rice high resistance to Lepidoptera pests.	Pest Manag. Sci.	80(4)	1728-1739	2024		
54602	38085756	Li D., Wu X., Huang C., Lin Q., Wang Y., Yang X., Wang C., Xuan Y., Wei S., Mei Q.	Enhanced Rice Resistance to Sheath Blight through <i>Nitrate Transporter 1.1B</i> Mutation without Yield Loss under NH4+ Fertilization.	J. Agric. Food Chem.	71(50)	19958-19969	2023		
54603	38137023	Liu G., Qiu D., Lu Y., Wu Y., Han X., Jiao Y., Wang T., Yang J., You A., Chen J., Zhang Z.	Identification of Superior Haplotypes and Haplotype Combinations for Grain Size- and Weight-Related Genes for Breeding Applications in Rice (<i>Oryza sativa</i> L.).	Genes (Basel)	14(12)		2023		
54604	38139187	Fu X., Zhong L., Wang H., He H., Chen X.	Elucidation of the Mechanism of Rapid Growth Recovery in Rice Seedlings after Exposure to Low-Temperature Low-Light Stress: Analysis of Rice Root Transcriptome, Metabolome, and Physiology.	Int J Mol Sci	24(24)		2023		
54605	38225089	Unan R., Azapoglu O., Deligoz &#x130;., Mennan H., Al-Khatib K.	Gene flow and spontaneous mutations are responsible for imidazolinone herbicide-resistant weedy rice (Oryza sativa L.).	Pestic Biochem Physiol	198	105746	2024		
54606	38085356	Tokuyama Y., Omachi M., Kushida S., Hikichi K., Okada S., Onishi K., Ishii T., Kishima Y., Koide Y.	Different contributions of PROG1 and TAC1 to the angular kinematics of the main culm and tillers of wild rice (Oryza rufipogon).	Planta	259(1)	19	2023		
54607	38087150	Zhu L., Zeng F., Liang Y., Wang Q., Chen H., Feng P., Fan M., Cheng Y., Wang J.	Small Papillae Regulated by SPD25 are Critical for Balancing Photosynthetic CO2 Assimilation and Water Loss in Rice.	Rice (N Y)	16(1)	58	2023		
54608	38105442	Suzuki M., Kitazawa Y., Iwabuchi N., Maejima K., Matsuyama J., Matsumoto O., Oshima K., Namba S., Yamaji Y.	Target degradation specificity of phytoplasma effector phyllogen is regulated by the recruitment of host proteasome shuttle protein.	Mol. Plant Pathol.	25(1)	e13410	2024		
54609	38111612	Goyal L., Kaur M., Mandal M., Panda D., Karmakar S., Molla K.A., Bhatia D.	Potential gene editing targets for developing haploid inducer stocks in rice and wheat with high haploid induction frequency.	3 Biotech	14(1)	14	2024		
54610	38118073	Qin X., Li Y., Li C., Li X., Wu Y., Wu Q., Wen H., Jiang D., Liu S., Nan W., Liang Y., Zhang H.	A Rapid and Simplified Method to Isolate Specific Regulators Based on Biotin-Avidin Binding Affinities in Crops.	J. Agric. Food Chem.	72(1)	883-893	2024		
54611	38071312	Zou Y., Zhang Y., Cui J., Gao J., Guo L., Zhang Q.	Nitrogen fertilization application strategies improve yield of the rice cultivars with different yield types by regulating phytohormones.	Sci Rep	13(1)	21803	2023		
54612	38140404	Ma P., Zhou L., Liao X.H., Zhang K.Y., Aer L.S., Yang E.L., Deng J., Zhang R.P.	Effects of Low Light after Heading on the Yield of Direct Seeding Rice and Its Physiological Response Mechanism.	Plants (Basel)	12(24)		2023		
54613	38041394	Benson D.R., Deng B., Kashipathy M.M., Lovell S., Battaile K.P., Cooper A., Gao P., Fenton A.W., Zhu H.	The N-terminal intrinsically disordered region of Ncb5or docks with the cytochrome b5 core to form a helical motif that is of ancient origin.	Proteins	92(4)	554-566	2024		
54614	38054926	Syu Z.J., Tu C.K., Chen C.Y., Lo S.F., Lee M.H.	A Large-Scale Hydroponic Evaluation of Rice Mutants for <i>Pythium</i> Resistance.	Plant Dis.			2023		
54615	38129010	Yu X., Wang P., Wang L., Wang K., Duan Y., Huo J., Ma X., Dong S., Xin G., Xiao Z.	Inhibition mechanism of rice glutelin on extruded starch digestion: From the structural properties of starch and enzyme activity.	Food Res. Int.	175	113790	2024		
54616	38140418	Brunet-Loredo A., L&#xf3;pez-Belch&#xed; MD., Cordero-Lara K., Noriega F., Cabeza R.A., Fischer S., Careaga P., Garriga M.	Assessing Grain Quality Changes in White and Black Rice under Water Deficit.	Plants (Basel)	12(24)		2023		
54617	38136642	Fortunato S., Nigro D., Lasorella C., Marcotuli I., Gadaleta A., de Pinto MC.	The Role of glutamine synthetase (GS) and Glutamate Synthase (GOGAT) in the Improvement of Nitrogen Use Efficiency in Cereals.	Biomolecules	13(12)		2023		
54618	38062703	Xie L., Wu D., Fang Y., Ye C., Zhu Q.H., Wei X., Fan L.	Population genomic analysis unravels the evolutionary roadmap of pericarp color in rice.	Plant Commun	5(3)	100778	2024		
54619	37930474	Yang Y., Zhang C., Li H., Yang Z., Xu Z., Tai D., Ni D., Wei P., Yi C., Yang J., Ding Y.	An epi-allele of SMS causes Sanming dominant genic male sterility in rice.	Sci China Life Sci	66(12)	2701-2710	2023		
54620	38069667	Zhang H., Rong Z., Li Y., Yin Z., Lu C., Zhao H., Kong L., Meng L., Ding X.	NIT24 and NIT29-mediated IAA synthesis of Xanthomonas oryzae pv. oryzicola suppresses immunity and boosts growth in rice.	Mol. Plant Pathol.	25(1)	e13409	2024		
54621	38234904	Zhang S., Wang L., Gao J., Zhou B., Hao W., Feng D., Sun X.	Effect of biochar on biochemical properties of saline soil and growth of rice.	Heliyon	10(1)	e23859	2024		
54622	38202383	Ghazy M.I., Abdelrahman M., El-Agoury RY., El-Hefnawy TM., El-Naem SA., Daher E.M., Rehan M.	Exploring Genetics by Environment Interactions in Some Rice Genotypes across Varied Environmental Conditions.	Plants (Basel)	13(1)		2023		
54623	38188088	Kongdin M., Chumanee S., Sansenya S.	Gamma Irradiation Promotes the Growth Rate of Thai Pigmented Rice As Well As Inducing the Accumulation of Bioactive Compounds and Carbohydrate Hydrolyzing Enzymes Inhibitors (&#x3b1;-Glucosidase and &#x3b1;-Amylase) under Salt Conditions.	Preventive Nutrition and Food Science	28(4)	463-470	2023		
54624	37387261	Xiao-Jing L., Bao X., Meng-Yu W., Xiao-Man L., Xu-Jing W., Zhi-Xing W.	Transcriptional and proteomic analysis.	GM Crops Food	14(1)	1-16	2023		
54625	38149801	Liu K., Xie B., Peng L., Wu Q., Hu J.	Profiling of RNA editing events in plant organellar transcriptomes with high-throughput sequencing.	Plant J.	118(2)	345-357	2024		
54626	37977916	Dong W., Chang T., Dai H., Yang W., Su Y., Chao D., Zhu X.G., Wang P., Yu N., Wang E.	Creating a C4-like vein pattern in rice by manipulating SHORT ROOT and auxin levels.	Science Bulletin	68(24)	3133-3136	2023		
54627	36722712	Gonz&#xe1;lez-Torralva F., Norsworthy J.K.	Overexpression of <i>Acetyl CoA Carboxylase 1</i> and <i>3</i> (<i>ACCase1</i> and <i>ACCase3</i>), and <i>CYP81A21</i> were related to cyhalofop resistance in a barnyardgrass accession from Arkansas.	Plant Signal Behav	18(1)	2172517	2023		
54628	38091105	Lu T., Yin W., Zhang Y., Zhu C., Zhong Q., Li S., Wang N., Chen Z., Ye H., Fang Y., Mu D., Wang Y., Rao Y.	wlp3 Encodes the Ribosomal Protein L18 and Regulates Chloroplast Development in Rice.	Rice (N Y)	16(1)	59	2023	WLP3	OsPRPL18, PRPL18, OsWLP3
54629	38084009	Huang S., Konishi N., Yamaji N., Ma J.F.	Local distribution of manganese to leaf sheath is mediated by OsNramp5 in rice.	New Phytol.	241(4)	1708-1719	2024		
54630	38269296	Li X., Xie J., Dong C., Zheng Z., Shen R., Cao X., Chen X., Wang M., Zhu J.K., Tian Y.	Efficient and heritable A-to-K base editing in rice and tomato.	Hortic Res	11(1)	uhad250	2024		
54631	38085288	Fritsche-Neto R., Ali J., De Asis EJ., Allahgholipour M., Labroo M.R.	Improving hybrid rice breeding programs via stochastic simulations: number of parents, number of hybrids, tester update, and genomic prediction of hybrid performance.	Theor. Appl. Genet.	137(1)	3	2023		
54632	37827526	Takai Y., Hasi R.Y., Matsumoto N., Fujita C., Ali H., Hayashi J., Kawakami R., Aihara M., Ishikawa T., Imai H., Wakida M., Ando K., Tanaka T.	Degradation of glycosylinositol phosphoceramide during plant tissue homogenization.	J. Biochem.	175(1)	115-124	2023		
54633	38091930	Khalil M.I., Hassan M.M., Samanta S.C., Chowdhury A.K., Hassan M.Z., Ahmed N.U., Somaddar U., Ghosal S., Robin A.H.K., Nath U.K., Mostofa M.G., Burritt D.J., Ha C.V., Gupta A., Tran L.P., Saha G.	Unraveling the genetic enigma of rice submergence tolerance: Shedding light on the role of ethylene response factor-encoding gene SUB1A-1.	Plant Physiol. Biochem.	206	108224	2024		
54634	38030751	Phukan U.J., Jindal S., Laldinsangi C., Singh P.K., Longchar B.	A microscopic scenario on recovery mechanisms under waterlogging and submergence stress in rice.	Planta	259(1)	9	2023		
54635	37981085	Xu Y., Wu Z., Shen W., Zhou H., Li H., He X., Li R., Qin B.	Disruption of the rice ALS1 localized in chloroplast causes seedling-lethal albino phenotype.	Plant Sci.	338	111925	2024		
54636	38068684	Kabange N.R., Dzorkpe G.D., Park D.S., Kwon Y., Lee S.B., Lee S.M., Kang J.W., Jang S.G., Oh K.W., Lee J.H.	Rice (<i>Oryza sativa</i> L.) grain size, Shape, and Weight-Related QTLs Identified Using GWAS with Multiple GAPIT Models and High-Density SNP Chip DNA Markers.	Plants (Basel)	12(23)		2023		
54637	38078088	Jing S., Xu J., Tang H., Li P., Yu B., Liu Q.	The roles of small RNAs in rice-brown planthopper interactions.	Front Plant Sci	14	1326726	2023		
54638	38069243	Gasparis S., Mi&#x142;oszewski MM.	Genetic Basis of grain size and Weight in Rice, Wheat, and Barley.	Int J Mol Sci	24(23)		2023		
54639	38013071	Sun X., Bian X., Wang J., Chen S., Yang R., Li R., Xia L., Chen D., Fan X.	Loss of RSR1 function increases the abscisic acid content and improves rice quality performance at high temperature.	Int. J. Biol. Macromol.	256(Pt 1)	128426	2024		
54640	38069292	Zhai R., Ye S., Ye J., Wu M., Zhu G., Yu F., Wang X., Feng Y., Zhang X.	Glutaredoxin in Rice Growth, Development, and Stress Resistance: Mechanisms and Research Advances.	Int J Mol Sci	24(23)		2023		
54641	38069264	Chandra D., Cho K., Pham H.A., Lee J.Y., Han O.	Down-Regulation of Rice Glutelin by <i>CRISPR-Cas9</i> Gene Editing Decreases Carbohydrate Content and grain weight and Modulates Synthesis of Seed Storage Proteins during Seed Maturation.	Int J Mol Sci	24(23)		2023		
54642	37990109	Han C., Chen G., Zheng D., Feng N.	Transcriptomic and metabolomic analyses reveal that ABA increases the salt tolerance of rice significantly correlated with jasmonic acid biosynthesis and flavonoid biosynthesis.	Sci Rep	13(1)	20365	2023		
54643	37975831	Huang S., Deng Q., Zhao Y., Chen G., Geng A., Wang X.	l-Glutamate Seed Priming Enhances 2-Acetyl-1-pyrroline Formation in Fragrant Rice Seedlings in Response to Arsenite Stress.	J. Agric. Food Chem.	71(47)	18443-18453	2023		
54644	38069084	Wang Q., Zhang H., Wei L., Guo R., Liu X., Zhang M., Fan J., Liu S., Liao J., Huang Y., Wang Z.	<i>yellow-green leaf 19</i> Encoding a Specific and Conservative Protein for Photosynthetic Organisms Affects Tetrapyrrole Biosynthesis, Photosynthesis, and Reactive Oxygen Species Metabolism in Rice.	Int J Mol Sci	24(23)		2023	LCAA	OsLCAA, YGL19, OsYGL19
54645	37993704	Kumar S., Seem K., Kumar S., Singh A., Krishnan S.G., Mohapatra T.	DNA methylome analysis provides insights into gene regulatory mechanism for better performance of rice under fluctuating environmental conditions: epigenomics of adaptive plasticity.	Planta	259(1)	4	2023		
54646	38222275	Rai M., Chucha D., Deepika D., Lap B., Magudeeswari P., Padmavathi G., Singh N., Tyagi W.	Pyramiding of qDTY1.1 and qDTY3.1 into rice mega-variety Samba Mahsuri-Sub1: physiological performance under water deficit conditions.	Physiol Mol Biol Plants	29(12)	1931-1943	2023		
54647	38125445	Gebru M., Alemayehu G., Bitew Y.	Yield and lodging response of tef [<i>Eragrostis tef</i> (Zucc) trotter] varieties to nitrogen and silicon application rates.	Heliyon	9(12)	e22576	2023		
54648	38069005	Lian W., Geng A., Wang Y., Liu M., Zhang Y., Wang X., Chen G.	The Molecular Mechanism of Potassium Absorption, Transport, and Utilization in Rice.	Int J Mol Sci	24(23)		2023		
54649	38047036	Rehman M., Kundu B., Regon P., Tanti B.	Biochemical and molecular properties of Boro rice (<i>Oryza sativa</i> L.) cultivars under abiotic stresses.	3 Biotech	13(12)	422	2023		
54650	38069299	Qiao L., Wu Q., Yuan L., Huang X., Yang Y., Li Q., Shahzad N., Li H., Li W.	<i>SMALL PLANT</i> AND <i>ORGAN 1</i> (<i>spo1</i>) Encoding a cellulose synthase-like protein D4 (OsCSLD4) Is an Important Regulator for Plant Architecture and Organ Size in Rice.	Int J Mol Sci	24(23)		2023	ND1	CSLD4, OsCSLD4, OsCD1, CD1, DNL3, OsDNL3, NRL1, OsNRL1, SPO1, OsSPO1, SPO1/OsCSLD4
54651	38010047	Li J., Li S., Li J., Tan X., Zhao Z., Jiang L., Hoffmann A.A., Fang J., Ji R.	Egg-associated secretions from the brown planthopper (Nilaparvata lugens) activate rice immune responses.	Insect Science			2023		
54652	38006407	Iwasa M., Chigira K., Nomura T., Adachi S., Asami H., Nakamura T., Motobayashi T., Ookawa T.	Identification of Genomic Regions for Deep-Water Resistance in Rice for Efficient Weed Control with Reduced Herbicide Use.	Rice (N Y)	16(1)	53	2023		
54653	38069282	Shi S., Wang H., Zha W., Wu Y., Liu K., Xu D., He G., Zhou L., You A.	Recent Advances in the Genetic and Biochemical Mechanisms of Rice Resistance to Brown Planthoppers (<i>Nilaparvata lugens</i> St&#xe5;l).	Int J Mol Sci	24(23)		2023		
54654	37996996	Chung Y.H., Chen T.C., Yang W.J., Chen S.Z., Chang J.M., Hsieh W.Y., Hsieh M.H.	Ectopic expression of a bacterial thiamin monophosphate kinase enhances vitamin B1 biosynthesis in plants.	Plant J.	117(5)	1330-1343	2024		
54655	38042318	Sun K., Li Z., Lian M., Li Q., Wang R., Gu Y., Lei P., He H., Xu H., Sha F., Sun L.	Characterization of a novel exopolysaccharide from Acinetobacter rhizosphaerae with ability to enhance the salt stress resistance of rice seedlings.	Int. J. Biol. Macromol.	256(Pt 2)	128438	2024		
54656	37977025	Ye C., Guo J., Zhou X.Q., Chen D.G., Liu J., Peng X., Jaremko M., Jaremko &#x141;., Guo T., Liu C.G., Chen K.	The Dsup coordinates grain development and abiotic stress in rice.	Plant Physiol. Biochem.	205	108184	2023		
54657	37957233	Qi Z., Ling F., Jia D., Cui J., Zhang Z., Xu C., Yu L., Guan C., Wang Y., Zhang M., Dou J.	Effects of low nitrogen on seedling growth, photosynthetic characteristics and antioxidant system of rice varieties with different nitrogen efficiencies.	Sci Rep	13(1)	19780	2023		
54658	37967728	Duff S.M.G., Zhang M., Zinnel F., Rydel T., Taylor C.M., Chen D., Tilton G., Mamanella P., Duda D., Wang Y., Xiang B., Karunanandaa B., Varagona R., Chittoor J., Qi Q., Hall E., Garvey G., Zeng J., Zhang J., Li X., White T., Jerga A., Haas J.	Structural and functional characterization of triketone dioxygenase from Oryza Sativa.	Biochim Biophys Acta Gen Subj	1868(2)	130504	2024		
54659	38003009	Srivastava A., Pusuluri M., Balakrishnan D., Vattikuti J.L., Neelamraju S., Sundaram R.M., Mangrauthia S.K., Ram T.	Identification and Functional Characterization of Two Major Loci Associated with Resistance against Brown Planthoppers (<i>Nilaparvata lugens (St&#xe5;l)</i>) Derived from <i>Oryza nivara</i>.	Genes (Basel)	14(11)		2023		
54660	37979574	Feng W., Zhang H., Cao Y., Liu Y., Zhao Y., Sun F., Yang Q., Zhang X., Zhang Y., Wang Y., Li W., Lu Y., Fu F., Yu H.	Maize ZmBES1/BZR1-1 transcription factor negatively regulates drought tolerance.	Plant Physiol. Biochem.	205	108188	2023		
54661	37957162	Zhao Z., Ding Z., Huang J., Meng H., Zhang Z., Gou X., Tang H., Xie X., Ping J., Xiao F., Liu Y.G., Xie Y., Chen L.	Copy number variation of the restorer Rf4 underlies human selection of three-line hybrid rice breeding.	Nat Commun	14(1)	7333	2023		
54662	38005723	da Cruz TI., Rocha D.C., Lanna A.C., Dedicova B., Vianello R.P., Brondani C.	Calcium-Dependent Protein Kinase 5 (<i>OsCPK5</i>) Overexpression in Upland Rice (<i>Oryza sativa</i> L.) under Water Deficit.	Plants (Basel)	12(22)		2023		
54663	37968598	Zhou H., Liu M., Meng F., Zheng D., Feng N.	Transcriptomics and physiology reveal the mechanism of potassium indole-3-butyrate (IBAK) mediating rice resistance to salt stress.	BMC Plant Biol.	23(1)	569	2023		
54664	37974472	Lahari Z., van Boerdonk S., Omoboye O.O., Reichelt M., H&#xf6;fte M., Gershenzon J., Gheysen G., Ullah C.	Strigolactone deficiency induces jasmonate, sugar and flavonoid phytoalexin accumulation enhancing rice defense against the blast fungus Pyricularia oryzae.	New Phytol.	241(2)	827-844	2024		
54665	37979353	Jalil S., Nazir M.M., Al-Huqail AA., Ali B., Al-Qthanin RN., Asad M.A.U., Eweda M.A., Zulfiqar F., Onursal N., Masood H.A., Yong J.W.H., Jin X.	Silicon nanoparticles alleviate cadmium toxicity in rice (Oryza sativa L.) by modulating the nutritional profile and triggering stress-responsive genetic mechanisms.	Ecotoxicol. Environ. Saf.	268	115699	2023		
54666	38005777	Huang X., Lu Z., Zhai L., Li N., Yan H.	The Small Auxin-Up RNA <i>SAUR10</i> Is Involved in the Promotion of Seedling Growth in Rice.	Plants (Basel)	12(22)		2023		
54667	38003029	Sun B., Ding X., Ye J., Dai Y., Cheng C., Zhou J., Niu F., Tu R., Hu Q., Xie K., Qiu Y., Li H., Feng Z., Shao C., Cao L., Zhang A., Chu H.	Unveiling the Genetic Basis Underlying Rice anther culturability via Segregation Distortion Analysis in Doubled Haploid Population.	Genes (Basel)	14(11)		2023		
54668	37973669	Wang Y., Sun Q., Zhao J., Liu T., Du H., Shan W., Wu K., Xue X., Yang C., Liu J., Chen Z., Hu K., Feng Z., Zuo S.	Fine mapping and candidate gene analysis of qSB12YSB, a gene conferring major quantitative resistance to rice sheath blight.	Theor. Appl. Genet.	136(12)	246	2023		
54669	37995580	Gupta B.B., Mishra S.K., Banoth S.K., Baliyan S., Chauhan H.	Iron and zinc biofortification of rice by synergistic expression of OsNAS2 gene with monocot (Pennisetum glaucum) and dicot (Phaseolus vulgaris) ferritins.	Plant Physiol. Biochem.	205	108195	2023		
54670	38054028	Kabange N.R., Alibu S., Kwon Y., Lee S.M., Oh K.W., Lee J.H.	Genome-wide association study (GWAS) with high-throughput SNP chip DNA markers identified novel genetic factors for mesocotyl elongation and seedling emergence in rice (<i>Oryza sativa</i> L.) using multiple GAPIT models.	Front Genet	14	1282620	2023		
54671	37983630	Wen Y., Hu P., Fang Y., Tan Y., Wang Y., Wu H., Wang J., Wu K., Chai B., Zhu L., Zhang G., Gao Z., Ren D., Zeng D., Shen L., Dong G., Zhang Q., Li Q., Xiong G., Xue D., Qian Q., Hu J.	GW9 determines grain size and floral organ identity in rice.	Plant Biotechnol. J.	22(4)	915-928	2024	EMF2B,GW2	OsEMF2b, EMF2b, GW9, OsGW9, GW9/OsEMF2b ,OsGW2, OsRING429, RING429, GNL44, OsGNL44
54672	38090212	Nishikawa B., Mori K., Takimoto S., Watanabe B., Matsuo M., Nakano T., Nakagawa Y., Miyagawa H.	Quantitative evaluation of the biological activity of various brassinosteroids using spiral root induction in rice seeds.	Journal of Pesticide Science	48(4)	218-224	2023		
54673	37985474	Yang T., Dong J., Zhao J., Zhang L., Zhou L., Yang W., Ma Y., Wang J., Fu H., Chen J., Li W., Hu H., Jiang X., Liu Z., Liu B., Zhang S.	Genome-wide association mapping combined with gene-based haplotype analysis identify a novel gene for shoot length in rice (Oryza sativa L.).	Theor. Appl. Genet.	136(12)	251	2023	_	
54674	37936114	Zhao Y., Yin T., Ran X., Liu W., Shen Y., Guo H., Peng Y., Zhang C., Ding Y., Tang S.	Stimulus-responsive proteins involved in multi-process regulation of storage substance accumulation during rice grain filling under elevated temperature.	BMC Plant Biol.	23(1)	547	2023		
54675	37932934	Zhou S., Cai L., Wu H., Wang B., Gu B., Cui S., Huang X., Xu Z., Hao B., Hou H., Hu Y., Li C., Tian Y., Liu X., Chen L., Liu S., Jiang L., Wan J.	Fine-tuning rice heading date through multiplex editing of the regulatory regions of key genes by CRISPR-Cas9.	Plant Biotechnol. J.	22(3)	751-758	2024		
54676	37925413	Wang H., Lin Y.N., Yan S., Hong J.P., Tan J.R., Chen Y.Q., Cao Y.S., Fang W.	NRTPredictor: identifying rice root cell state in single-cell RNA-seq via ensemble learning.	Plant Methods	19(1)	119	2023		
54677	37958969	Wang Y., Meng W., Ye Y., Yu X., Chen H., Liu Y., Xu M., Wang N., Qi F., Lan Y., Xu Y., Ma J., Zhang C.	Transcriptome-Wide Analysis of Core Transcription Factors Associated with Defense Responses in Autotetraploid versus Diploid Rice under Saline Stress and Recovery.	Int J Mol Sci	24(21)		2023		
54678	37930441	Li S., Luo Y., Wei G., Zong W., Zeng W., Xiao D., Zhang H., Song Y., Hao Y., Sun K., Lei C., Guo X., Xu B., Li W., Wu Z., Liu Y., Xie X., Guo J.	Improving yield-related traits by editing the promoter of the heading date gene Ehd1 in rice.	Theor. Appl. Genet.	136(12)	239	2023		
54679	37926145	Jeon J., Rahman M.M., Yang H.W., Kim J., Gam H.J., Song J.Y., Jeong S.W., Kim J.I., Choi M.G., Shin D.H., Choi G., Shim D., Jung J.H., Lee I.J., Jeon J.S., Park Y.I.	Modulation of warm temperature-sensitive growth using a phytochrome B dark reversion variant, phyB[G515E], in Arabidopsis and rice.	Journal of Advanced Research			2023		
54680	37995493	Wu K., Xu L., Li X., Zhang Y., Yue Z., Gao Y., Chen Y.	Named entity recognition of rice genes and phenotypes based on BiGRU neural networks.	Comput Biol Chem	108	107977	2024		
54681	38005709	Yin W., Huang Z., Zhong Q., Tang L., Wu R., Li S., Mao Y., Zhu X., Wang C., Rao Y., Wang Y.	The Mining of Genetic Loci and the Analysis of Candidate Genes to Identify the Physical and Chemical Markers of Anti-Senescence in Rice.	Plants (Basel)	12(22)		2023		
54682	37919614	Rajkumari N., Chowrasia S., Nishad J., Ganie S.A., Mondal T.K.	Metabolomics-mediated elucidation of rice responses to salt stress.	Planta	258(6)	111	2023		
54683	37953830	Manoj C.A., Muralidhara B., Basavaraj P.S., Honnappa M., Ajitha V., Aleena D., Ishwaryalakshmi V.G., Usha G., Gireesh C., Senguttuvel P., Kemparaju K.B., Rao L.V.S., Basavaraj K., Laha G.S., Sundaram R.M., Kumar R., Rathod S., Salimath P.M., Lokesha R., Diwan J., Nidagundi J.M., Gowrisankar M., Anantha M.S.	Improvement of bacterial blight resistance of the high yielding, fine-grain, rice variety, Gangavati sona through marker-assisted backcross breeding.	3 Biotech	13(12)	393	2023		
54684	38005712	Zhu X., Kuang Y., Chen Y., Shi J., Cao Y., Hu J., Yu C., Yang F., Tian F., Chen H.	miR2118 Negatively Regulates Bacterial Blight Resistance through Targeting Several Disease Resistance Genes in Rice.	Plants (Basel)	12(22)		2023		
54685	37953831	Dey N., Bhattacharjee S.	Comparative transcriptomic data confirm the findings of dehydration stress-induced redox biology of indigenous aromatic rice cultivars.	3 Biotech	13(12)	392	2023		
54686	37960119	Chen D.G., Guo J., Chen K., Ye C.J., Liu J., Chen Y.D., Zhou X.Q., Liu C.G.	Pyramiding Breeding of Low-Glutelin-Content <i>Indica</i> Rice with Good Quality and Resistance.	Plants (Basel)	12(21)		2023		
54687	38003271	Singh G., Singh N., Ellur R.K., Balamurugan A., Prakash G., Rathour R., Mondal K.K., Bhowmick P.K., Gopala Krishnan S., Nagarajan M., Seth R., Vinod K.K., Singh V., Bollinedi H., Singh A.K.	Genetic Enhancement for Biotic Stress Resistance in Basmati Rice through Marker-Assisted Backcross Breeding.	Int J Mol Sci	24(22)		2023		
54688	37925528	Fang X., Mo J., Zhou H., Shen X., Xie Y., Xu J., Yang S.	Comparative transcriptome analysis of gene responses of salt-tolerant and salt-sensitive rice cultivars to salt stress.	Sci Rep	13(1)	19065	2023		
54689	37994015	Yan Y., Zhang Z., Sun H., Liu X., Xie J., Qiu Y., Chai T., Chu C., Hu B.	Nitrate confers rice adaptation to high ammonium by suppressing its uptake but promoting its&#xa0;assimilation.	Mol Plant	16(12)	1871-1874	2023		
54690	38006430	Zhang P., Wu X., Chen Y., Ji G., Ma X., Zhang Y., Xiang J., Wang Y., Wang Z., Li L., Chen H., Zhang Y.	Comparative Transcriptome Combined with Morphophysiological Analyses Revealed Carotenoid Biosynthesis for Differential Chilling Tolerance in Two Contrasting Rice (Oryza sativa L.) Genotypes.	Rice (N Y)	16(1)	52	2023		
54691	37993538	Abg Ahmad DFB., Wasli M.E., Tan C.S.Y., Musa Z., Chin S.F.	Eco-friendly cellulose hydrogels as controlled release fertilizer for enhanced growth and yield of upland rice.	Sci Rep	13(1)	20453	2023		
54692	38009528	Corr&#xea;a A., Ferrol N., Cruz C.	Testing the trade-balance model: resource stoichiometry does not sufficiently explain AM effects.	New Phytol.	242(4)	1561-1575	2024		
54693	38006996	Wu J., Liu X., Ge F., Li F., Liu N.	Tolerance mechanism of rice (Oryza sativa L.) seedings towards polycyclic aromatic hydrocarbons toxicity: The activation of SPX-mediated signal transduction to maintain P homeostasis.	Environ. Pollut.	341	123009	2024		
54694	37997697	Zhang D., Boch J.	Development of TALE-adenine base editors in plants.	Plant Biotechnol. J.	22(5)	1067-1077	2024		
54695	38133133	Yadav P., Santosh Kumar VV., Priya J., Yadav S.K., Nagar S., Singh M., Chinnusamy V.	A Versatile Protocol for Efficient Transformation and Regeneration in Mega <i>Indica</i> Rice Cultivar MTU1010: Optimization through Hormonal Variables.	Methods Protoc	6(6)		2023		
54696	38132753	Nacoon S., Seemakram W., Gateta T., Theerakulpisut P., Sanitchon J., Kuyper T.W., Boonlue S.	Accumulation of Health-Promoting Compounds in Upland Black Rice by Interacting Mycorrhizal and Endophytic Fungi.	J Fungi (Basel)	9(12)		2023		
54697	38002151	Zhang X., Zhang Q., Yang J., Jin Y., Wu J., Xu H., Xiao Y., Lai Y., Guo Z., Wang J., Shi W.	Comparative Effects of Heat Stress at Booting and Grain-Filling Stage on Yield and Grain Quality of High-Quality Hybrid Rice.	Foods	12(22)		2023		
54698	38046607	Sanchez D.L., Samonte S.O.P., Wilson L.T.	Genetic architecture of head rice and rice chalky grain percentages using genome-wide association studies.	Front Plant Sci	14	1274823	2023		
54699	37971600	Moon S., Derakhshani B., Gho Y.S., Kim E.J., Lee S.K., Jiang X., Lee C., Jung K.H.	PRX102 Participates in Root Hairs Tip Growth of Rice.	Rice (N Y)	16(1)	51	2023	PRX102	prx102, OsPRX102
54700	37940406	Sun L., Ma R., Xu H., Su W., Xue F., Wu R., Lu C.	Protective mechanisms of neral as a plant-derived safener against fenoxaprop-p-ethyl injury in rice.	Pest Manag. Sci.	80(3)	1249-1257	2024		
54701	38045128	Yadav S.P.S., Adhikari R., Paudel P., Shah B., Pokhrel S., Puri S., Adhikari R., Bhujel S.	Effect of different chemical priming agents on physiological and morphological characteristics of rice (<i>Oryza sativa</i> L.).	Heliyon	9(11)	e22389	2023		
54702	38074863	Anwar M.P., Shayokh A.H., Sarkar P.K., Yeasmin S., Rashid M.H., Sultana A., Kheya S.A., Islam AKMM.	Deployment of fine and coarse grain rice cultivars in time and space for increased productivity.	Heliyon	9(11)	e22387	2023		
54703	38003730	Watanabe Y., Nobe Y., Taoka M., Okamoto T.	The Feeder Effects of Cultured Rice Cells on the Early Development of Rice Zygotes.	Int J Mol Sci	24(22)		2023		
54704	38053767	Srikanth B., Subrahmanyam D., Sanjeeva Rao D., Narender Reddy S., Supriya K., Raghuveer Rao P., Surekha K., Sundaram R.M., Neeraja C.N.	Promising physiological traits associated with nitrogen use efficiency in rice under reduced N application.	Front Plant Sci	14	1268739	2023		
54705	38028749	Baruah A.R., Bannai H., Meija Y., Kimura A., Ueno H., Koide Y., Kishima Y., Palta J., Kasuga J., Yamamoto M.P., Onishi K.	Genetics of chilling response at early growth stage in rice: a recessive gene for tolerance and importance of acclimation.	AoB Plants	15(6)	plad075	2023	CTP-1	Osctp-1
54706	38023939	Kushwaha A.K., Ellur R.K., Maurya S.K., Krishnan S G., Bashyal B.M., Bhowmick P.K., Vinod K.K., Bollinedi H., Singh N.K., Singh A.K.	Fine mapping of <i>qBK1.2</i>, a major QTL governing resistance to bakanae disease in rice.	Front Plant Sci	14	1265176	2023		
54707	38023836	Luo M., Gong W., Zhang S., Xie L., Shi Y., Wu D., Shu X.	Discrepancies in resistant starch and starch physicochemical properties between rice mutants similar in high amylose content.	Front Plant Sci	14	1267281	2023		
54708	37992468	Nanfack A.D., Nguefack J., Musonerimana S., La China S., Giovanardi D., Stefani E.	Exploiting the microbiome associated with normal and abnormal sprouting rice (Oryza sativa L.) seed phenotypes through a metabarcoding approach.	Microbiol. Res.	279	127546	2024		
54709	37960141	Yao Y., Zhang H., Guo R., Fan J., Liu S., Liao J., Huang Y., Wang Z.	Physiological, Cytological, and Transcriptomic Analysis of Magnesium protoporphyrin IX methyltransferase Mutant Reveal Complex Genetic Regulatory Network Linking Chlorophyll Synthesis and Chloroplast Development in Rice.	Plants (Basel)	12(21)		2023		
54710	37924445	Sedah P., Djedatin L.G., Loko L.Y.E., Gbemavo CDSJ., Orobiyi A., Toffa J., Tchakpa C., Ewedje E.B.K., Sabot F.	Agro-morphological and structural diversity of rice germplasm revealed by SSR markers in Benin Republic.	Mol. Biol. Rep.	50(12)	10207-10217	2023		
54711	37921982	Mishra A., Mishra T.K., Nanda S., Mohanty M.K., Dash M.	A comprehensive review on genetic modification of plant cell wall for improved saccharification efficiency.	Mol. Biol. Rep.	50(12)	10509-10524	2023		
54712	38023850	Mwakyusa L., Heredia M.C., Kilasi N.L., Madege R.R., Herzog M., Dixit S.	Screening of potential donors for anaerobic stress tolerance during germination in rice.	Front Plant Sci	14	1261101	2023		
54713	37951713	Wang W., Hu J., Li H., Yan J., Sun X.	PlantIntronDB: a database for&#xa0;plant introns that host functional elements.	Database (Oxford)	2023		2023		
54714	37544174	Wang K., Li S., Yang Z., Chen C., Fu Y., Du H., Sun H., Li J., Zhao Q., Du C.	L-type lectin receptor-like kinase OsCORK1 as an important negative regulator confers copper stress tolerance in rice.	J. Hazard. Mater.	459	132214	2023	CORK1	OsCORK1
54715	37302187	Qiao Y., Ai Ping Zhang, Li Ya Ma, Zhang N., Liu J., Yang H.	An ABCG-type transporter intensifies ametryn catabolism by Phase III reaction mechanism in rice.	J. Hazard. Mater.	457	131804	2023	PDR18	OsPDR18, OsABCG52, ABCG52
54716	0	Dong S., Zhang J., Sun D., Liu H., Yang Q., Wang H., Chen Z., Wang J.	Identification of Magnaporthe oryzae-elicited rice novel miRNAs and their targets by miRNA and degradome sequencing	Eur J Plant Pathol	151	629-647	2018	MIR11117	Osa-miR11117, miR11117, miR-T21
54717	12783325	Yamamoto T., Kimura S., Mori Y., Uchiyama Y., Ishibashi T., Hashimoto J., Sakaguchi K.	Interaction between proliferating cell nuclear antigen and JUN-activation-domain-binding protein 1 in the meristem of rice, Oryza sativa L.	Planta	217(2)	175-83	2003	JAB1	Osjab1, jab1, OsJAB1, CSN5, OsCSN5,OsCSN5A CSN5A, 
54718	0	Xiao S., Shao M., Wang D., Li W., Liu F.	Identification and Evolution of FYVE Domain-Containing Proteins and Their Expression Patterns in Response to Abiotic Stresses in Rice	Plant Molecular Biology Reporter	34	1064-1082	2016	FYVE11,RCC1-5,RCC1-6,FYVE18,FYVE13,PRAF2,FYVE2,FYVE17,FYVE6,RLR4,FYVE1,FYVE7,FREE1,FYVE4,FYVE15,FYVE12,FYVE19,DLN38,FYVE16	OsFYVE11,OsRCC1-5, OsGE12, GEF12, OsFYVE05, OsFYVE5, FYVE05, FYVE5,OsRCC1-6, OsGE13, GEF13, OsFYVE08, OsFYVE8, FYVE08, FYVE8,OsFYVE18,OsFYVE13,OsPRAF2, OsFYVE10, FYVE10,OsFYVE02, FYVE02, OsFYVE2,OsFYVE17,OsFYVE06, FYVE06, OsFYVE6,OsRLR4, OsFYVE09, FYVE09, OsFYVE9, FYVE9,OsSTA28, OsFYVE01, OsFYVE01, FYVE01,OsFYVE7, OsFYVE07, FYVE07,OsFREE1, OsFYVE14, FYVE14,OsFYVE04, FYVE04, OsFYVE4,OsFYVE15,OsFYVE12,OsFYVE19,OsDLN38, OsFYVE03, OsFYVE3, FYVE03, FYVE3,OsFYVE16
54719	0	CHEN Guang, LI Jia, DU Rui-ying, WANG Xu	pOsHAK1 :OsFLN2 Expression Enhances the drought tolerance by Altering Sugar Metabolism in Rice	BIOTECHNOLOGY BULLETIN	38(8)	92-100	2022	HSA1	OsHSA1, OsFLN2, FLN2, HSA1/OsFLN2
54720	0	Li W., Zhang M., Qiao L., Yunbo ChenDapeng Zhang, Jing X., Gan P., Huang Y., Gao J., Liu W., Shi C., Cui H., Li H., Chen K.	Characterization of wavy root 1, an agravitropism allele, reveals the functions of OsPIN2 in fine regulation of auxin transport and distribution and in ABA biosynthesis and response in rice (Oryza sativa L.)	The Crop Journal	10	980-992	2022	LRA1	OsPIN2, PIN2, OsLRA1, WAR1, OsWAR1
54721	17610133	Agarwal P., Arora R., Ray S., Ashok K Singh, Vijay P Singh, Takatsuji H., Kapoor S., Akhilesh K Tyagi	Genome-wide identification of C2H2 zinc-finger gene family in rice and their phylogeny and expression analysis.	Plant Mol. Biol.	65(4)	467-85	2007	ZOSE,ZOS2-19,ZOS8-02,ZOS2-04,ZOS3-14,ZOS12-10,ZOS2-09,ZOS5-09,ZOS1-22,ZOS1-07,ZOS2-08,ZOS3-18,ZOS9-13,ZOS5-08,ZOS10-05,ZOS1-09,SAP16,ZOS7-11,SL1,ZOS8-11,ZOS8-05,ZOSI,ZOSJ,ZOS9-02,ZOS9-09,ZOS9-17,ZOS10-02,ZOS11-04,ZOS1-01,ZOS1-06,ZOS12-02,ZOS7-12,ZOS2-07,ZOS7-13,ZOSG,HDT701,ZOS12-06,ZOS3-08,ZOS4-10,ZOS9-21,ZOS7-06,ZOS3-03,ZOS8-06,ZOS5-01,ZOSF,ZOS12-09,ZOS5-11,ZOS1-08,PROG1,ZOS5-07,ZOS4-12,ZOS8-08,ZOS7-07,LPA1,ZFP245,ZOS12-07,ZOS2-11,ZOS3-21,ZOS2-18,ZOSB,NKD,ZOS2-02,ZOS4-07,ZOS1-21,ZOS9-06,ZOS12-04,ZOS4-03,ZOS10-04,ZOS5-05,ZOS8-03,ZOS7-09,ZOS8-13,IDD2,EMF2A,ZOS2-12,ZOS8-12,ZOS6-03,ZOS2-14,ZOS4-13,ZOS12-05,ZOS7-10,ZOS3-07,ZOS6-05,ZOS5-06,ZOSC,ZOS4-04,ZOS3-10,DRG9,ZOS3-09,ZOS6-08,ZOS11-07,ZOS9-20,ZOS8-14,ZOS5-03,ZOS11-08,ZOS3-12,ZOS10-03,ZOS7-03,ZOS9-01,ZOS9-16,ZOS9-05,ZOS2-05,ZOS1-17,ZOS12-03,ZOS10-01,ZOS9-08,ZOS9-18,ZOS4-05,ZOSD,ZOS4-01,ZOS3-19,ZOS1-15,ZOS11-05,ZOS3-15,ZOS1-16,ZOS3-04,ZOS3-13,ZOS6-07,ZOS9-03,ZOS5-04,ZOS3-23,ZOS3-20,ZOS3-11,DU13,ZOS1-13,ZOS6-06,ZOS1-11,ZOS3-02,ZOS1-12,ZOS4-08,ZOS2-16,ZOS1-05,ZOS3-16,ZOS6-11,ZOS1-23,ZOS3-24,ZOS9-11,ZOS11-02,ZOS1-18,ZOS1-19,ZOS9-19,ZOS2-03,ZOS11-01,ZOS2-17,ZOS1-03,ZOS6-01,ZOS12-08,ZOS7-04,ZOS7-01,ZOS8-04,ZOS4-14,ZOS8-10,ZOS6-02,ZOS2-06,TML,ZOS2-15,ZOS1-20,ZOSH,ZOS8-07,ZOS4-09,ZOS2-10,ZOS8-09,ZOS5-02,ZOS9-14,ZOS11-03,ZOS9-15,ZOS11-10,ZOS9-10,ZOS6-04,ZOS3-17,ZOS8-01,ZOS9-12,ZOS10-07,ZOS5-10,ZOS3-01,ZOS4-06,ZOS6-10,ZOS3-05,ZOSA,ZOS2-13,ZOS11-11,ZOS2-01,ZOS1-10,ZOS1-14,ZOS11-09,ZOS10-06,ZOS11-06,ZOS12-01,ZOS3-22	OsZOSe, ZOSe,OsZOS2-19,OsZOS8-02,OsZOS2-04,OsZOS3-14,OsZOS12-10,OsZOS2-09,OsZOS5-09,OsZOS1-22,OsZOS1-07,OsZOS2-08,OsZOS3-18,OsZOS9-13,OsZOS5-08,OsZOS10-05,OsZOS1-09,OsSAP16, ZOS7-05, OsZOS7-05,OsZOS7-11,sl1(t), sl1, stl1, opb, OPB1, ps, PS, OPB, DLN2, OsDLN2, OsJAG, JAG, OsJAG.1, OsJAG.2, ZOS1-02, OsZOS1-02,OsZOS8-11,OsZOS8-05,OsZOSi, ZOSi,OsZOSj, ZOSj,OsZOS9-02,OsZOS9-09,OsZOS9-17,OsZOS10-02,OsZOS11-04,OsZOS1-01,OsZOS1-06,OsART1, STAR3, OsZOS12-02, ART1,OsZOS7-12,OsZOS2-07,OsZOS7-13,OsZOSg, ZOSg,OsHDT1, HDT701, OsHDT701, ZOS5-12, OsZOS5-12, HDT1,OsZOS12-06,OsZOS3-08,OsZOS4-10,OsZOS9-21,OsZOS7-06,OsZOS3-03,OsZOS8-06,OsZOS5-01,OsZOSf, ZOSf,OsZOS12-09,OsZOS5-11,OsZOS1-08,OsPROG1, ZOS7-02, OsZOS7-02,OsZOS5-07,OsZOS4-12,OsZOS8-08,OsZOS7-07,OsIDD14, LPA1, IDD14, OsLPA1, ZOS1-06, OsZOS1-06,OsZFP245, DLN192, OsDLN192, ZOS7-08, OsZOS7-08,OsZOS12-07,OsZOS2-11,OsZOS3-21,OsZOS2-18,OsZOSb, ZOSb,IDD10, OsIDD10, OsNKD, OsZOS4-11, ZOS4-11,OsZOS2-02,OsZOS4-07,OsZOS1-21,OsZOS9-06,OsZOS12-04,OsZOS4-03,OsZOS10-04,OsZOS5-05,OsZOS8-03,OsZOS7-09,OsZOS8-13,OsIDD2, ZOS1-04, OsZOS1-04,OsEMF2a, OsEMF2, EMF2, ZOS4-02, OsZOS4-02,OsZOS2-12,OsZOS8-12,OsZOS6-03,OsZOS2-14,OsZOS4-13,OsZOS12-05,OsZOS7-10,OsZOS3-07,OsZOS6-05,OsZOS5-06,OsZOSc, ZOSc,OsZOS4-04,OsZOS3-10,OsZOS9-07, ZOS9-07, OsDRG9, OsDRG9, ZOS9-07,OsZOS3-09,OsZOS6-08,OsZOS11-07,OsZOS9-20,OsZOS8-14,OsZOS5-03,OsZOS11-08,OsZOS3-12,OsZOS10-03,OsZOS7-03,OsZOS9-01,OsZOS9-16,OsZOS9-05,OsZOS2-05,OsZOS1-17,OsZOS12-03,OsZOS10-01,OsZOS9-08,OsZOS9-18,OsZOS4-05,OsZOSd, ZOSd,OsZOS4-01,OsZOS3-19,OsZOS1-15,OsZOS11-05,OsZOS3-15,OsZOS1-16,OsZOS3-04,OsZOS3-13,OsZOS6-07,OsZOS9-03,OsZOS5-04,OsZOS3-23,OsZOS3-20,OsZOS3-11,OsDLN175, DLN175, OsSE, SE, OsDU13, ZOS6-09, OsZOS6-09,OsZOS1-13,OsZOS6-06,OsZOS1-11,OsZOS3-02,OsZOS1-12,OsZOS4-08,OsZOS2-16,OsZOS1-05,OsZOS3-16,OsZOS6-11,OsZOS1-23,OsZOS3-24,OsZOS9-11,OsZOS11-02,OsZOS1-18,OsZOS1-19,OsSIP1, OsSUF4, SUF4, OsZOS9-19, SIP1,OsZOS2-03,OsZOS11-01,OsZOS2-17, OsZF8, ZF8,OsZOS1-03,OsZOS6-01,OsZOS12-08,OsZOS7-04,OsZOS7-01,OsZOS8-04,OsZOS4-14,OsZOS8-10,OsZOS6-02,OsZOS2-06,OsZOS9-04, OsTML, OsWIP6, WIP6, ZOS9-04,OsZOS2-15,OsZOS1-20,OsZOSh, ZOSh,OsZOS8-07,OsZOS4-09,OsZOS2-10,OsZOS8-09,OsZOS5-02,OsZOS9-14,OsZOS11-03,OsZOS9-15,OsZOS11-10,OsZOS9-10,OsZOS6-04,OsZOS3-17,OsZOS8-01,OsZOS9-12,OsZOS10-07,OsZOS5-10,OsZOS3-01,OsZOS4-06,OsZOS6-10,OsZOS3-05,OsZOSa, ZOSa,OsZOS2-13,OsZOS11-11,OsZOS2-01,OsZOS1-10,OsZOS1-14,OsZOS11-09,OsZOS10-06, OsRFP, OsRING134, RING134, OsHAKAI, HAKAI,OsZOS11-06,OsZOS12-01,OsZOS3-22
54722	38452087	Zhang X., Meng W., Liu D., Pan D., Yang Y., Chen Z., Ma X., Yin W., Niu M., Dong N., Liu J., Shen W., Liu Y., Lu Z., Chu C., Qian Q., Zhao M., Tong H.	Enhancing rice panicle branching and grain yield through tissue-specific brassinosteroid inhibition.	Science	383(6687)	eadk8838	2024		
54723	38180963	Tian Y., Zeng H., Wu J.C., Dai G.X., Zheng H.P., Liu C., Wang Y., Zhou Z.K., Tang D.Y., Deng G.F., Tang W.B., Liu X.M., Lin J.Z.	The zinc finger protein DHHC09 S-acylates the kinase STRK1 to regulate H2O2 homeostasis and promote salt tolerance in rice.	Plant Cell	36(4)	919-940	2024		
54724	38521113	Wang Z., Wang R., Yuan H., Fan F., Li S., Cheng M., Tian Z.	Comprehensive identification and analysis of DUF640 genes associated with rice growth.	Gene	914	148404	2024		
54725	38588412	Zhang Z.L., Wang X.J., Lu J.B., Lu H.B., Ye Z.X., Xu Z.T., Zhang C., Chen J.P., Li J.M., Zhang C.X., Huang H.J.	Cross-kingdom RNA interference mediated by insect salivary microRNAs may suppress plant immunity.	Proc. Natl. Acad. Sci. U.S.A.	121(16)	e2318783121	2024	BZIP22	OsbZIP22, OsbZIP43, bZIP43
54726	38575100	Ying S., Tang Y., Yang W., Hu Z., Huang R., Ding J., Yi X., Niu J., Chen Z., Wang T., Liu W., Peng X.	The vesicle trafficking gene, OsRab7, is critical for pollen development and male fertility in cytoplasmic male-sterility rice.	Gene	915	148423	2024		
54727	38489602	Li Y., Wang J., Gao Y., Pandey B.K., Peralta Ogorek LL., Zhao Y., Quan R., Zhao Z., Jiang L., Huang R., Qin H.	The OsEIL1-OsWOX11 transcription factor module controls rice crown root development in response to soil compaction.	Plant Cell	36(6)	2393-2409	2024	WOX11,EIL1A	OsWOX11, Os WOX11, OsWOX12A,EIL1, OsEIL1, EIL1a, OsEIL1a, MHZ6/OsEIL1, MHZ6, OsMHZ6
54728	38531669	Quiroz D., Oya S., Lopez-Mateos D., Zhao K., Pierce A., Ortega L., Ali A., Carbonell-Bejerano P., Yarov-Yarovoy V., Suzuki S., Hayashi G., Osakabe A., Monroe G.	H3K4me1 recruits DNA repair proteins in plants.	Plant Cell	36(6)	2410-2426	2024		
54729	38801741	Chen Y., Jin G., Liu M., Wang L., Lou Y., Baldwin I., Li R.	Multi-omic analyses reveal key sectors of jasmonate-mediated defense responses in rice.	Plant Cell			2024		
54730	38776366	Zhang X.F., Li Z., Lin H., Cheng Y., Wang H., Jiang Z., Ji Z., Huang Z., Chen H., Wei T.	A phytoplasma effector destabilizes chloroplastic glutamine synthetase inducing chlorotic leaves that attract leafhopper vectors.	Proc. Natl. Acad. Sci. U.S.A.	121(22)	e2402911121	2024		
54731	38701330	Yue Z., Wang Z., Yao Y., Liang Y., Li J., Yin K., Li R., Li Y., Ouyang Y., Xiong L., Hu H.	Variation in WIDTH OF LEAF AND GRAIN contributes to grain and leaf size by controlling LARGE2 stability in rice.	Plant Cell			2024	WLG	OsRING306, OsWLG, FLW3, OsFLW3
54732	38750355	Wang G., Chen X., Yu C., Shi X., Lan W., Gao C., Yang J., Dai H., Zhang X., Zhang H., Zhao B., Xie Q., Yu N., He Z., Zhang Y., Wang E.	Release of a ubiquitin brake activates OsCERK1-triggered immunity in rice.	Nature	629(8014)	1158-1164	2024		
54733	38431290	Kamble N.U.	Directing a colleague: LIKE EARLY STARVATION with FLOURY ENDOSPERM 6 targets isoamylase 1 to rice starch granules.	Plant Cell	36(5)	1590-1591	2024	LESV,FLO6,PHS8	OsLESV, LSD1, OsLSD1,OsSIP4, SIP4, OsFLO6, OsSFq3, SFq3,ISA1, OsISA1, ISA, OsISA, PHS8/ISA1, OsPHS8, ISA I, OsISA I, ISAI, OsISAI
54734	38943676	Zhou Y., Gao Y.H., Zhang B.C., Yang H.L., Tian Y.B., Huang Y.H., Yin C.C., Tao J.J., Wei W., Zhang W.K., Chen S.Y., Zhou Y.H., Zhang J.S.	CELLULOSE SYNTHASE-LIKE C proteins modulate cell wall establishment during ethylene-mediated root growth inhibition in rice.	Plant Cell			2024	CESA7,CSLC1,EIL1A,CSLC7,CSLC9,BC6,CESA3,CSLC2,BC7	OsCesA7, OsCESA7, OS_CESA07, OsCesA 7, CesA7,OsCslC1, OsCSLC1,EIL1, OsEIL1, EIL1a, OsEIL1a, MHZ6/OsEIL1, MHZ6, OsMHZ6,OsCslC7, OsCSLC7 ,OsCslC9, OsCSLC9,Bc6*, Bc6, OsCesA9, CESA9, OsCESA9, OS_CESA09, OsCesA 9, CesA9, BC88, SDBC1, OsSDBC1,OsCesA3, OsCESA3, OS_CESA03,OsCslC2, OsCSLC2 ,OsCesA4, OsCESA4, CESA4, OS_CESA04, BC11, bc7t, Bc7(t), bc-7, OsCesA 4, CesA4, FC17/CESA4, FC17, OsFC17
54735	38916914	Zhang H., Chen W., Zhu D., Zhang B., Xu Q., Shi C., He H., Dai X., Li Y., He W., Lv Y., Yang L., Cao X., Cui Y., Leng Y., Wei H., Liu X., Zhang B., Wang X., Guo M., Zhang Z., Li X., Liu C., Yuan Q., Wang T., Yu X., Qian H., Zhang Q., Chen D., Hu G., Qian Q., Shang L.	Population-level exploration of alternative splicing and its unique role in controlling agronomic traits of rice.	Plant Cell			2024		
54736	38872029	Wu W., Dong X., Chen G., Lin Z., Chi W., Tang W., Yu J., Wang S., Jiang X., Liu X., Wu Y., Wang C., Cheng X., Zhang W., Xuan W., Terzaghi W., Ronald P.C., Wang H., Wang C., Wan J.	The elite haplotype OsGATA8-H coordinates nitrogen uptake and productive tiller formation in rice.	Nat. Genet.	56(7)	1516-1526	2024	AMT3;2,TCP19,GATA8	AMT3;2, OsAMT3;2, OsAMT3.2,OsTCP19,OsGATA8, OsGATA14, GATA14, OsGATA8a, OsGATA8b, DLN10, OsDLN10
54737	38430431	Zhao Y., Hu J., Zhou Z., Li L., Zhang X., He Y., Zhang C., Wang J., Hong G.	Biofortified Rice Provides Rich Sakuranetin in Endosperm.	Rice (N Y)	17(1)	19	2024	GLUD1,NOMT	GluD1, GluD-1, OsGluD-1, OsEnS-33, EnS-33, GluD,OsNOMT, COMTL3, OsCOMTL3, OsCOMT29, COMT29
54738	38444161	Zhang H., Sun B., Wu W., Li Y., Yin Z., Lu C., Zhao H., Kong L., Ding X.	The MYB transcription factor OsMYBxoc1 regulates resistance to Xoc by directly repressing transcription of the iron transport gene OsNRAMP5 in rice.	Plant Commun	5(6)	100859	2024	ARM1,LCD1	OsMYB-1, MYB-1, MYB1, OsARM1, Os2R_MYB56, 2R_MYB56, OsMYBxoc1, MYBxoc1,NRAMP5, OsNRAMP5, OsNramp5, OsLCD1
54739	38424498	Jiang Z., Wang X., Zhou Z., Peng L., Lin X., Luo X., Song Y., Ning H., Gan C., He X., Zhu C., Ouyang L., Zhou D., Cai Y., Xu J., He H., Liu Y.	Functional characterization of D-type cyclins involved in cell division in rice.	BMC Plant Biol.	24(1)	157	2024	CYCD4;2,CYCD5;1,CYCD2;2,CYCD5;2,CYCD1;1,CYCD3;1,CYCD1;3,CYCD6;1,CYCD1;2,CYCD4;1,CYCD7;1,CYCD2;3,CYCD2;1,CYCD5;3	CycD4;2, CycD4;os;2, Orysa;CycD4;2, Orysa;CYCD4;2, OsCYCD4;2,CycD5;1, CycD5;os;1, Orysa;CycD5;1, Orysa;CYCD5;1, OsCYCD5;2, CycD5;2,CycD2;2, CycD2;os;2, Orysa;CycD2;2, Orysa;CYCD2;2, CyclinD3;1, OsCYCD2;1, OsCYCD3;1, CYCD3;1,CycD5;2, CycD5;os;2, Orysa;CycD5;2, Orysa;CYCD5;2, OsCYCD5;1, CYCD5;1,CycD1;1, CycD1;os;1, Orysa;CycD1;1, Orysa;CYCD1;1, OsCYCD2;1, CYCD2;1,CycD3;1, CycD3;os;1, Orysa;CycD3;1, Orysa;CYCD3;1, CycD3-1, OsCycD3-1, OsCYCD3;2, CYCD3;2,CycD1;3, CycD1;os;3, Orysa;CycD1;3, Orysa;CYCD1;3, OsCYCD1;2, CYCD1;2,CycD6;1, CycD6;os;1, Orysa;CycD6;1, Orysa;CYCD6;1, OsCYCD6;1,CycD1;2, CycD1;os;2, Orysa;CycD1;2, Orysa;CYCD1;2, OsCYCD1;1, CYCD1;1,CycD2;1, CYCD2-1, Orysa;CycD2;1, OsCYCD2;1, Orysa;CycD4;1, CycD4;1, CYCD4-1, Orysa;CYCD4;1, cycD, OsCYCD4;1,,CycD7;1, CycD7;os;1, Orysa;CycD7;1, OsCYCD3, CYCD3, OsCYCD7;1,CycD2;3, CycD2;os;3, Orysa;CycD2;3, Orysa;CYCD2;3, OsCYCD2;3,CycD2;1, CYCD2-1, OsCYCD2-1, Orysa;CycD2;1, Orysa;CYCD2;1, Orysa;CycD2;2, OsCYCD2;2, CYCD2;2,CycD5;3, CYCD5-3, Orysa;CycD5;3, Orysa;CYCD5;3, OsCYCD5;3
54740	38461862	Xu M., Ni Y., Tu Y., Wang Y., Zhang Z., Jiao Y., Zhang X.	A SCYL2 gene from Oryza sativa is involved in phytosterol accumulation and regulates plant growth and salt stress.	Plant Sci.	343	112062	2024		
54741	38438662	Rathore R.S., Mishra M., Pareek A., Singla-Pareek SL.	A glutathione-independent DJ-1/Pfp1 domain containing glyoxalase III, OsDJ-1C, functions in abiotic stress adaptation in rice.	Planta	259(4)	81	2024		
54742	38592751	Sun Z., Mei T., Tan X., Feng T., Li R., Duan S., Zhao H., Ye Y., Liu B., Zhou A., Ai H., Huang X.	The <i>LDP1</i> Mutation Affects the Expression of Auxin-Related Genes and Enhances SAM Size in Rice.	Plants (Basel)	13(6)		2024	RAU4,EBP2,LDP1,RAU1,UGT709C2	OsLAX4, OsRAU4, OsAUX4, LAX4, AUX4,OsEBP2,OsLDP1,OsLAX1, OsRAU1, OsAUX1, LAX1, AUX1,OsUGT709C2, OsUG709C2, UG709C2
54743	38504376	Uji Y., Suzuki G., Fujii Y., Kashihara K., Yamada S., Gomi K.	Jasmonic acid (JA)-mediating MYB transcription factor1, JMTF1, coordinates the balance between JA and auxin signalling in the rice defence response.	Physiol Plant	176(2)	e14257	2024		
54744	38413386	Luo J., Amin B., Wu B., Wu B., Huang W., Salmen S.H., Fang Z.	Blocking of awn development-related gene OsGAD1 coordinately boosts yield and quality of Kam Sweet Rice.	Physiol Plant	176(2)	e14229	2024		
54745	38461436	Wang J., Li M., Nan N., Ma A., Ao M., Yu J., Wang X., Han K., Yun D.J., Liu B., Li N., Xu Z.Y.	OsGADD45a1: a multifaceted regulator of rice architecture, grain yield, and blast resistance.	Plant Cell Rep.	43(4)	88	2024		
54746	38502176	Li M., Li J., Zhang Y., Zhai Y., Chen Y., Lin L., Peng J., Zheng H., Chen J., Yan F., Lu Y.	Integrated ATAC-seq and RNA-seq data analysis identifies transcription factors related to rice stripe virus infection in Oryza sativa.	Mol. Plant Pathol.	25(3)	e13446	2024	ERF91,C3H12,WRKY77,WRKY28	OsERF#091, OsERF091, OsERF91, AP59, OsAP59, AP2/EREBP#147, AP2/EREBP147, OsBIERF3, BIERF3,OsC3H12, OsZFP12, ZFP12,OsWRKY77, WRKY-77,OsWRKY28, DLN170, OsDLN170
54747	38460401	Zhang H., Liu M., Yin K., Liu H., Liu J., Yan Z.	A novel OsHB5-OsAPL-OsMADS27/OsWRKY102 regulatory module regulates grain size in rice.	J. Plant Physiol.	295	154210	2024	HOX29,WRKY102,APL,MADS27	Oshox29, OsHox29, OSHB5, HB5,OsWRKY102,OsAPL,OsMADS27, MADS-27a, OsSTA66, OsMADS27a
54748	38474136	Zhu X., Li Y., Zhao X., Feng Y., Bao Z., Liu W., Li F.	<i>Osofp6</i> Overexpression Alters Plant Architecture, grain shape, and Seed Fertility.	Int J Mol Sci	25(5)		2024	OFP4,RING291	OsOFP4, OsOFP06, OsOFP6, OFP6,OsRING291, E3BB, OsE3BB, BB, OsBB, E3BB, OsE3BB
54749	38450899	Wang C., Wang Z., Cai Y., Zhu Z., Yu D., Hong L., Wang Y., Lv W., Zhao Q., Si L., Liu K., Han B.	A higher-yield hybrid rice is achieved by assimilating a dominant heterotic gene in inbred parental lines.	Plant Biotechnol. J.	22(6)	1669-1680	2024	LHS1	OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO, OsLHS1, OsLG3b, LG3b, qLGY3, LGY3, DLN80, OsDLN80, OLR, OsOLR, GW3p6, OsGW3p6, OsMADS1GW3p6, MADS1GW3p6, qLGY3/OsLG3b/GW3p6
54750	38493663	Kim E.Y., Kim M.H., Yun S.D., Lee S.K., Kim E.J., Kim J.H., Oh S.A., Kim Y.J., Jung K.H., Park S.K.	Redundant role of OsCNGC4 and OsCNGC5 encoding cyclic nucleotide-gated channels in rice pollen germination and tube growth.	Plant Physiol. Biochem.	208	108522	2024		
54751	38509429	Wang J., Long W., Pan J., Zhang X., Luo L., Qian M., Chen W., Luo L., Xu W., Li Y., Cai Y., Xie H.	DNAL7, a new allele of NAL11, has major pleiotropic effects on rice architecture.	Planta	259(5)	93	2024		
54752	38480722	Zhang C., Wang H., Tian X., Lin X., Han Y., Han Z., Sha H., Liu J., Liu J., Zhang J., Bu Q., Fang J.	A transposon insertion in the promoter of OsUBC12 enhances cold tolerance during japonica rice germination.	Nat Commun	15(1)	2211	2024	OSK3,UBC12	osk3, OsATG1b, ATG1B, OSK5, osk5, OSK35, SnRK1b, OsK35, OsSnRK1.1, SnRK1.1, OsSnRK1alphaB, SnRK1alphaB,OsUBC12
54753	38506090	Zhang L., Wang S., Bai B., Chen Y., Xiang Z., Chen C., Kuang X., Yang Y., Fu J., Chen L., Mao D.	OsKASI-2 is required for the regulation of unsaturation levels of membrane lipids and chilling tolerance in rice.	Plant Biotechnol. J.	22(8)	2157-2172	2024	KASI-1,KAS-IA	OsKASI, KASI, OsKASI-1,OsKAS Ia, KAS Ia, OsKAS-IA, OsKASI-2, KASI-2
54754	38480732	Gou Y., Heng Y., Ding W., Xu C., Tan Q., Li Y., Fang Y., Li X., Zhou D., Zhu X., Zhang M., Ye R., Wang H., Shen R.	Natural variation in OsMYB8 confers diurnal floret opening time divergence between indica and japonica subspecies.	Nat Commun	15(1)	2262	2024	MYB8,JAR1	OsMYB8, OsMYB305, MYB305, Os2R_MYB9, 2R_MYB9 ,OsJAR1, OsGH3.5, GH3.5, OsGH3-5, GH3-5
54755	38481060	Tang Z., Li Y.F., Zhang Z.H., Huang X.Y., Zhao F.J.	OsCOPT7 is a copper exporter at the tonoplast and endoplasmic reticulum and controls Cu translocation to the shoots and grain of rice.	Plant Cell Environ.	47(6)	2163-2177	2024		
54756	38511186	Hasan M., Nishat Z.S., Hasan M.S., Hossain T., Ghosh A.	Identification of m6A RNA methylation genes in <i>Oryza sativa</i> and expression profiling in response to different developmental and environmental stimuli.	Biochem Biophys Rep	38	101677	2024	MTA2,ALKBH8A,ECT5,MTA4,ECT9,YTH3,ZOS10-06,ALKBH1A,MTA1,C3H4,C3H41,C3H45,ECT7,C3H7,ALKBH10,ECT8,ECT12,YTH5,ALKBH8B,VIR,ALKBH5,YTH10,ECT2,ECT10,MTA3,IAI1,MTE,ECT4	OsMTA2, OsIME4, IME4, OsMTB, MTB,OsALKBH8A,OsECT5,OsMTA4, OsMTD, MTD,OsECT9,OsYTH03, YTH03, OsYTH3, OsECT3, ECT3,OsZOS10-06, OsRFP, OsRING134, RING134, OsHAKAI, HAKAI,OsALKBH1A, OsALKBH9B, ALKBH9B,OsMTA1, OsMTA, MTA,OsC3H4, OsCPSF30-L1, CPSF30-L1,OsC3H41, MKRN, OsRING387, RING387, OsCPSF30-L3, CPSF30-L3,OsC3H45, OsCPSF30-L4, CPSF30-L4,OsECT7,OsC3H7, DLN12, OsDLN12, OsCPSF30-L2, CPSF30-L2,OsALKBH10, OsALKBH9C, ALKBH9C,OsECT8, OsYTH07, YTH07,OsECT12,OsYTH05, YTH05, OsYTH5, OsECT6, ECT6,OsALKBH8B,OsVIR,OsALKBH5, OsALKBH9A, ALKBH9A, OsALKBH9, ALKBH9,OsYTH10, OsECT11, ECT11,OsECT2,OsECT10,OsMTA3, OsMTC, MTC,OsIAI1, OsECT1, ECT1,TagI, OsMTE, OsMTF, MTF,OsECT4
54757	38507319	Kwon O.K., Moon H., Jeong A.R., Yeom G., Park C.J.	Rice small secreted peptide, OsRALF26, recognized by FERONIA-like receptor 1 induces immunity in rice and Arabidopsis.	Plant J.	118(5)	1528-1549	2024		
54758	38483018	Liu C., Mao B., Zhang Y., Tian L., Ma B., Chen Z., Wei Z., Li A., Shao Y., Cheng G., Li L., Li W., Zhang D., Ding X., Peng J., Peng Y., He J., Ye N., Yuan D., Chu C., Duan M.	The OsWRKY72-OsAAT30/OsGSTU26 module mediates reactive oxygen species scavenging to drive heterosis for salt tolerance in hybrid rice.	J Integr Plant Biol	66(4)	709-730	2024	AAT30	OsAAT30
54759	38498207	Nguyen T.T., Nguyen T.C., Do P.T., To H.T.M.	Effect of gibberellin on crown root development in the mutant of the rice plasmodesmal Germin-like protein OsGER4.	Funct. Integr. Genomics	24(2)	59	2024		
54760	38506334	Huang X., Li Y., Chang Z., Yan W., Xu C., Zhang B., He Z., Wang C., Zheng M., Li Z., Xia J., Li G., Tang X., Wu J.	Regulation by distinct MYB transcription factors defines the roles of OsCYP86A9 in anther development and root suberin deposition.	Plant J.	118(6)	1972-1990	2024		
54761	38497544	Ju J.F., Yang L., Shen C., Li J.C., Hoffmann A.A., Huang Y.X., Zhu F., Ji R., Luo G.H., Fang J.C.	Defence and nutrition synergistically contribute to the distinct tolerance of rice subspecies to the stem borer, Chilo suppressalis.	Plant Cell Environ.	47(7)	2426-2442	2024		
54762	38513731	Lu X., Li Y., Akhtar M., Liu C., Ma T., Min W., Bai X., She Y., Chen L., Tian L., Li P., Luo C.	A DUF966 gene family member OsDSR3 positively regulates alkali stress tolerance in rice.	Plant Sci.	343	112072	2024		
54763	38592851	Latif A., Yang C.G., Zhang L.X., Yang X.Y., Liu X.Y., Ai L.F., Noman A., Pu C.X., Sun Y.	The Receptor Kinases DRUS1 and DRUS2 Behave Distinctly in Osmotic Stress Tolerance by Modulating the root system Architecture via Auxin Signaling.	Plants (Basel)	13(6)		2024	DRUS2,DRUS1	YK1, OsCrRLK1L5, CrRLK1L5, OsDRUS2, OsMRLK3, MRLK3, FLR2, OsFLR2,OsCrRLK1L8, CrRLK1L8, FLR1, OsFLR1, OsMRLK11, MRLK11, OsDRUS1
54764	38552302	Maharana J., Hwang S.K., Singha D.L., Panda D., Singh S., Okita T.W., Modi M.K.	Exploring the structural assembly of rice ADP-glucose pyrophosphorylase subunits using MD simulation.	J. Mol. Graph. Model.	129	108761	2024		
54765	38494697	Wu J., Liu H., Zhang Y., Zhang Y., Li D., Liu S., Lu S., Wei L., Hua J., Zou B.	A major gene for chilling tolerance variation in Indica rice codes for a kinase OsCTK1 that phosphorylates multiple substrates under cold.	New Phytol.	242(5)	2077-2092	2024	CTK1,P3B	OsCTK1,OsP3B
54766	38494545	Yan M., Jiao G., Shao G., Chen Y., Zhu M., Yang L., Xie L., Hu P., Tang S.	Chalkiness and premature controlled by energy homeostasis in OsNAC02 KO-mutant during vegetative endosperm development.	BMC Plant Biol.	24(1)	196	2024	NAC50,TUB1,BAMY1	ONAC050, ONAC50, OsSGL, SGL, OsNAC02, NAC02,OsTUB1, TUBB1, OSTB-34,OsSTA246, STA246, OsBamy1, Bamy1, BAM2, OsBAM2, OsBmy9, Bmy9, BMY5, OsBMY5
54767	38310845	Dong Q., Wu Y., Wang H., Li B., Huang R., Li H., Tao Q., Li Q., Tang X., Xu Q., Luo Y., Wang C.	Integrated morphological, physiological and transcriptomic analyses reveal response mechanisms of rice under different cadmium exposure routes.	J. Hazard. Mater.	466	133688	2024		
54768	38498220	Zhang Y., Lin X.F., Li L., Piao R.H., Wu S., Song A., Gao M., Jin Y.M.	CRISPR/Cas9-mediated knockout of Bsr-d1 enhances the blast resistance of rice in Northeast China.	Plant Cell Rep.	43(4)	100	2024		
54769	38146904	Jing X.Q., Shi P.T., Zhang R., Zhou M.R., Shalmani A., Wang G.F., Liu W.T., Li W.Q., Chen K.M.	Rice kinase OsMRLK63 contributes to drought tolerance by regulating reactive oxygen species production.	Plant Physiol.	194(4)	2679-2696	2024	RALF35,RALF34	OsRALF-35, OsRALF35, RALF-35, OsRALF46, RALF46,OsRALF-34, OsRALF34, RALF-34, OsRALF45, RALF45
54770	38519521	Shi X., Xie X., Guo Y., Zhang J., Gong Z., Zhang K., Mei J., Xia X., Xia H., Ning N., Xiao Y., Yang Q., Wang G.L., Liu W.	A fungal core effector exploits the OsPUX8B.2-OsCDC48-6 module to suppress plant immunity.	Nat Commun	15(1)	2559	2024	STL2,CDC48-4,PUX1,PUX4B,PSD128,ATG8B,BHT,ATG8C,PUX7A,PUX7C,ATG8,PUX11,PUX7B,CDC48-6,BRD13,PUX4A,PUX2,PUX8A,PUX10A,CDC48-7,CDC48-5,CDC48E,PUX10B,PUX8B	OsSTL2, OsCDC48-3, CDC48-3,OsCDC48-4,OsPUX1,OsPUX4B,OsCDC48, CDC48, OsCDC48-1, CDC48-1,OsATG8b, Atg8b,OsBHT, OsHsp20L, Hsp20L,OsATG8c,OsPUX7A,OsPUX7C,Atg8, OsAtg8, APG8, OsATG8a, Atg8a,OsPUX11,OsPUX7B,OsCDC48-6,OsBrd13, Brd13, OsCDC48-8, CDC48-8,OsPUX4A,OsPUX2,OsPUX8A,OsPUX10A,OsCDC48-7,OsCDC48-5,OsCDC48E, OsCDC48-2, CDC48-2,OsPUX10B,OsPUX8B, OsPUX8B.1, OsPUX8B.2, OsPUX8B.3
54771	37992039	Xu D., Zeng L., Wang L., Yang D.L.	Rice requires a chromatin remodeler for POLYMERASE IV-small interfering RNA production and genomic immunity.	Plant Physiol.	194(4)	2149-2164	2024		
54772	37995372	Lian J.P., Yuan C., Feng Y.Z., Liu Q., Wang C.Y., Zhou Y.F., Huang Q.J., Zhu Q.F., Zhang Y.C., Chen Y.Q., Yu Y.	MicroRNA397 promotes rice flowering by regulating the photorespiration pathway.	Plant Physiol.	194(4)	2101-2116	2024		
54773	38533652	Singh J., James D., Das S., Patel M.K., Sutar R.R., Achary V.M.M., Goel N., Gupta K.J., Reddy M.K., Jha G., Sonti R.V., Foyer C.H., Thakur J.K., Tripathy B.C.	Co-overexpression of SWEET sucrose transporters modulates sucrose synthesis and defence responses to enhance immunity against bacterial blight in rice.	Plant Cell Environ.	47(7)	2578-2596	2024		
54774	38520013	Sun B., Shen Y., Zhu L., Yang X., Liu X., Li D., Zhu M., Miao X., Shi Z.	OsmiR319-OsPCF5 modulate resistance to brown planthopper in rice through association with MYB proteins.	BMC Biol.	22(1)	68	2024	DLN31,_,PCF6,MIR319B,PCF5,MYB30,_,TCP21,MIR319A,2R_MYB84	R2R3-MYB, OsDLN31, MYB3, OsMYB22, MYB22, Os2R_MYB18, 2R_MYB18 ,OsPAL07, OsPAL, PAL07, OsPAL6, PAL6, PAL1, OsPAL7, PAL7,OsPCF6,OsmiR319b, Osa-miR319b,OsPCF5,OsMYB30, OsMYB5P, MYB5P, OsMYB13a, MYB13a, Os2R_MYB26, 2R_MYB26, OsMYB30C, MYB30C,PAL03, OsPAL8, PAL8 ,OsTCP21,OsmiR319a, Osa-miR319a, osa-MIR319aosa-miR319a osa-miR319a-3p osa-miR319a-3p.2-3p,OsMYB30, MYB30, Os2R_MYB84
54775	38554181	Guo S., Li Y., Wang Y., Xu Y., Li Y., Wu P., Wu J., Wang L., Liu X., Chen Z.	OsmiR5519 regulates grain size and weight and down-regulates sucrose synthase gene RSUS2 in rice (Oryza sativa L.).	Planta	259(5)	106	2024		
54776	38532340	Ma G., Zhang Y., Li X.	Overexpression of OsDUF6 increases salt stress tolerance in rice.	BMC Plant Biol.	24(1)	216	2024	FCO9	OsFCO9, OsDUF6, DUF6
54777	38612510	Chen S., Ye M., Kuai P., Chen L., Lou Y.	Silencing an ATP-dependent caseinolytic protease Proteolytic Subunit Gene Enhances the Resistance of Rice to <i>Nilaparvata lugens</i>.	Int J Mol Sci	25(7)		2024	VYL	OsClpP6, ClpP6, CLP6, NAL9, NAL9/VYL
54778	38611475	Li F., Ye H., Wang Y., Zhou J., Zhang G., Liu X., Lu X., Wang F., Chen Q., Chen G., Xiao Y., Tang W., Deng H.	Transcriptomic Profiling of Two Rice Thermo-Sensitive Genic Male Sterile Lines with Contrasting Seed Storability after Artificial Accelerated Aging Treatment.	Plants (Basel)	13(7)		2024	TPR46,V2,BIP2,_,HSP71.1,PRO13B.7,AMY3E,PMEI12,_,_,FSE6,FBOX516	OsTPR046, TPR046, OsTPR46,v2, mGmk, GMK, Gmk, pt/mtGK, pt/mt GK, OsV2, OsGMK,OsBiP2, Bip2,RAG2, RA14B, RA14, OsEnS-98,OsHsp71.1, OsHSP71.1, OsMED37_3, MED37_3 ,pro13b.7, OsPRO13B.7,Amy3D/E*(RAmy3D/E), alpha Amy8, alphaAmy8, AmyII-3, AMY1.4, Amy3E, Amy3D/E*, RAmy3D/E, Amy9, RAmy3E, alphaAmy8-C, AMY3E/AMY1.4, OsAmy3E, OsRamy3E,OsPMEI12,OsNPK1-PK, NPK1-PK, OsMKKK62, MKKK62, OsMAPKKK62, MAPKKK62, MEK7, OsMEK7,,OsGINT1, GINT1, OsFSE6,OsFbx352, OsFbox516, Fbx352, Fbox516, Os_F0046,  OsFBX352, FBX352
54779	38555719	Xiao T., Feng S., Liu J., Wang Y., ShangGuan X., Yu X., Shen Z., Hu Z., Xia Y.	OsGLP8-7 interacts with OsPRX111 to detoxify excess copper in rice.	Plant Physiol. Biochem.	210	108564	2024		
54780	38514621	Wang H., Ye T., Guo Z., Yao Y., Tu H., Wang P., Zhang Y., Wang Y., Li X., Li B., Xiong H., Lai X., Xiong L.	A double-stranded RNA binding protein enhances drought resistance via protein phase separation in rice.	Nat Commun	15(1)	2514	2024	NCED3,DRG9	OSNCED3, OsNCED-3, OsNCED3, OsNCED3a, NCED3a, OsNCED4, NCED4, OsNECD2, OsNCED2b, NCED2b ,OsZOS9-07, ZOS9-07, OsDRG9, OsDRG9, ZOS9-07
54781	38612404	Zhao S., Zhang Q., Xiao W., Chen D., Hu J., Gao N., Huang M., Ye X.	Comparison of Transcriptome Differences between Two Rice Cultivars Differing in Cadmium Translocation from Spike-Neck to Grain.	Int J Mol Sci	25(7)		2024		
54782	38974865	Li Y., Li S., Li C., Zhang C., Yan L., Li J., He Y., Guo Y., Xia L.	Fusion of a rice endogenous <i>N</i>-methylpurine DNA glycosylase to a plant adenine base transition editor ABE8e enables A-to-K base editing in rice plants.	Abiotech	5(2)	127-139	2024	MPG	TagI, OsMPG
54783	38386554	Yang Z., Du J., Tan X., Zhang H., Li L., Li Y., Wei Z., Xu Z., Lu Y., Chen J., Sun Z.	histone deacetylase OsHDA706 orchestrates rice broad-spectrum antiviral immunity and is impeded by a viral effector.	Cell Rep	43(3)	113838	2024	LOX11,HDAC6	OsLOX11, OsRCI-1, RCI-1, OsBphi262, OsLOX12, OsLOX2.2, LOX2.2, LOX2.1, OsLOX2.1, OsLOX14, LOX14,OsHDAC6, OsHDA706, HDA706
54784	38532321	Faustino M., Louren&#xe7;o T., Strobbe S., Cao D., Fonseca A., Rocha I., Van Der Straeten D., Oliveira M.M.	Mathematical kinetic modelling followed by in vitro and in vivo assays reveal the bifunctional rice GTPCHII/DHBPS enzymes and demonstrate the key roles of OsRibA proteins in the vitamin B2 pathway.	BMC Plant Biol.	24(1)	220	2024	RIBA2,RIBA1	OsRibA2, RibA2,OsRibA1, RibA1
54785	38592943	Ku W., Su Y., Peng X., Wang R., Li H., Xiao L.	Comparative Transcriptome Analysis Reveals Inhibitory Roles of Strigolactone in axillary bud Outgrowth in Ratoon Rice.	Plants (Basel)	13(6)		2024	GH3-8,CKX1,GN1A,GH3-6	OsGH3-8, OsMGH3, OsGH3.8, GH3.8, OsGH3-2,OsCKX1,Gn1a, OsCKX2, CKX2, ckx2, Gn1a/OsCKX2, Os CKX2, CKX2/Gn1a,OsGH3-6, OsGH3.6, GH3.6
54786	38549701	Xu M., Zhang X., Cao J., Liu J., He Y., Guan Q., Tian X., Tang J., Li X., Ren D., Bu Q., Wang Z.	<i>OsPGL3A</i> encodes a DYW-type pentatricopeptide repeat protein involved in chloroplast RNA processing and regulated chloroplast development.	Mol. Breed.	44(4)	29	2024	PGL3A	OsPGL3A
54787	38085003	Gui Y., Teo J., Tian D., Yin Z.	Genetic engineering low-arsenic and low-cadmium rice grain.	J. Exp. Bot.	75(7)	2143-2155	2024		
54788	38532331	Park M., Shin S.Y., Moon H., Choi W., Shin C.	Analysis of the global transcriptome and miRNAome associated with seed dormancy during seed maturation in rice (Oryza sativa L. cv. Nipponbare).	BMC Plant Biol.	24(1)	215	2024	ACO4,MATE19,ERF87,SAUR23,SAUR6,MIR531B,SAUR25,SAUR12,MIR390	OsACO4,OsMATE19,OsERF#087, OsERF087, OsERF87, AP2/EREBP#067, AP2/EREBP67,OsSAUR23,OsSAUR6,miR531b, osa-MIR531b,OsSAUR25,OsSAUR12,OsmiR390, miR390, osa-MIR390osa-miR390, osa-miR390-3p, osa-miR390-5p
54789	38526838	Wang M., Zhu X., Huang Z., Chen M., Xu P., Liao S., Zhao Y., Gao Y., He J., Luo Y., Chen H., Wei X., Nie S., Dong J., Zhu L., Zhuang C., Zhao J., Liu Z., Zhou H.	Controlling diurnal flower-opening time by manipulating the jasmonate pathway accelerates development of indica-japonica hybrid rice breeding.	Plant Biotechnol. J.	22(8)	2267-2281	2024	OG1,TIFY10B,HAN1,TIFY11A	OsOPR7, OPR7, OsOPR13, OsOPR3, OsOPR5, OsOPR9, OsOPR08-1,  OPR13, OPR3, OPR5, OPR9, OPR08-1, OsOPR8, OPR8,OsJAZ6, OsJAZ 7, OsJAZ7, OsTIFY10B, JAZ6, JAZ7,OsHAN1, OsCYP94B4, CYP94B4,OsJAZ3, JAZ3, OsJAZ 9, OsJAZ9, Os-JAZ9, JAZ9, OsTIFY11a, OsJAZ6, JAZ6
54790	38517516	Nongpiur R.C., Rawat N., Singla-Pareek SL., Pareek A.	OsRR26, a type-B response regulator, modulates salinity tolerance in rice via phytohormone-mediated ROS accumulation in roots and influencing reproductive development.	Planta	259(5)	96	2024		
54791	38526679	Sar P., Gupta S., Behera M., Chakraborty K., Ngangkham U., Verma B.C., Banerjee A., Hanjagi P.S., Bhaduri D., Shil S., Kumar J., Mandal N.P., Kole P.C., Purugganan M.D., Roy S.	Exploring Genetic Diversity within aus Rice Germplasm: Insights into the Variations in Agro-morphological Traits.	Rice (N Y)	17(1)	20	2024	SAC1,PUP4,GLT1	OsSAC1,OsPUP4, BG3/OsPUP4, BG3, OsBG3,OsGLT1, OsNADH-GOGAT1, NADH-GOGAT1, OsNADH-GOGAT, GOGAT, NADH-GOGAT, OsGOGAT1, GOGAT1, OsGLU1
54792	38518060	Zhai M., Chen Y., Pan X., Chen Y., Zhou J., Jiang X., Zhang Z., Xiao G., Zhang H.	OsEIN2-OsEIL1/2 pathway negatively regulates chilling tolerance by attenuating OsICE1 function in rice.	Plant Cell Environ.	47(7)	2561-2577	2024		
54793	38214208	Wu D., Cao Y., Wang D., Zong G., Han K., Zhang W., Qi Y., Xu G., Zhang Y.	Auxin receptor OsTIR1 mediates auxin signaling during seed filling in rice.	Plant Physiol.	194(4)	2434-2448	2024		
54794	38587024	Wang X., Ju Y., Wu T., Kong L., Yuan M., Liu H., Chen X., Chu Z.	The clade III subfamily of OsSWEETs directly suppresses rice immunity by interacting with OsHMGB1 and OsHsp20L.	Plant Biotechnol. J.	22(8)	2186-2200	2024	SWEET11B,HMGB1,SWEET15,SWEET13,BHT,SWEET12,XA41,XA13	OsSWEET11b,OsHMGB1, OsMNB1B, MNB1B,OsSWEET15,OsSWEET13, Xa25(t), Xa25, OsMtN3, Xa25/SWEET13, OsSWEET13/XA25,OsBHT, OsHsp20L, Hsp20L,OsSWEET12,OsSWEET14, SWEET14, Os11N3, Os-11N3, 11N3, Xa41(t), xa41, Os11N3/SWEET14, OsSWEET14/Os11N3,xa13, Xa13, Os8N3, Os-8N3, 8N3, OsSWEET11, SWEET11, OsSWEET11/Xa13, Xa13/Os8N3/SWEET11, Os8N3/Xa13, OsSWEET11/Os8N3, OsSWEET11a, SWEET11a
54795	38325101	Panthri M., Saini H., Banerjee G., Bhatia P., Verma N., Sinha A.K., Gupta M.	Deciphering the regulation of transporters and mitogen-activated protein kinase in arsenic and iron exposed rice.	J. Hazard. Mater.	467	133687	2024		
54796	38578842	Jing X., Wang P., Liu J., Xiang M., Song X., Wang C., Li P., Li H., Wu Z., Zhang C.	A viral protein competitively bound to rice CIPK23 inhibits potassium absorption and facilitates virus systemic infection in rice.	Plant Biotechnol. J.	22(8)	2348-2363	2024	CIPK23,AKT1,CBL1,COI	OsCIPK23, Os-CIPK23, OsSnRK3.23, SnRK3.23,OsAKT1, Os-AKT1,OsCBL1, Os-CBL1,OsCOI
54797	38581128	Dong N., Jiao G., Cao R., Li S., Zhao S., Duan Y., Ma L., Li X., Lu F., Wang H., Wang S., Shao G., Sheng Z., Hu S., Tang S., Wei X., Hu P.	OsLESV and OsESV1 promote transitory and storage starch biosynthesis to determine rice grain quality and yield.	Plant Commun	5(7)	100893	2024	GBSSII,ESV1,LESV,WX1,FLO4	GBSS2, OsGBSSII, OsGBSS2,OsESV1, LSD2, OsLSD2,OsLESV, LSD1, OsLSD1,wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx,FLO4-4, flo4, flo4-2, flo4-3, ppdk, OsPPDK, PPDK1, CPDK1, PPDKB, OsPPDKB, cyOsPPDKB, OsPBDK, PBDK, osppdkb, PPD, cyPPDK, chPPDKB, chOsPPDKB
54798	38575110	Li X., Wu M.E., Zhang J., Xu J., Diao Y., Li Y.	The OsCLV2s-OsCRN1 co-receptor regulates grain shape in rice.	J Genet Genomics	51(7)	691-702	2024	XIAO,FLS2,CLV2B,CRN1,CLV2A,CLV2C,CLV2D	OsXIAO, OsCLV2e, CLV2e,Os-FLS2, OsFLS2, OsCLV2f, CLV2f,OsCLV2b,OsCRN1,OsCLV2a,OsCLV2c,OsCLV2d
54799	38587574	Chen Y., Shi H., Yang G., Liang X., Lin X., Tan S., Guo T., Wang H.	OsCRLK2, a Receptor-Like Kinase Identified by QTL Analysis, is Involved in the Regulation of Rice Quality.	Rice (N Y)	17(1)	24	2024	CRLK2	OsCRLK2
54800	38581602	Zhang H., Liang M., Chen J., Wang H., Ma L.	Rapid generation of fragrant thermo-sensitive genic male sterile rice with enhanced disease resistance via CRISPR/Cas9.	Planta	259(5)	112	2024		
54801	38634111	Hemasai B., Kumbha D.K., Modem V.N., Gannavarapu S.K., Bommaka R.R., Mallapuram S., Chintala S., Sreevalli M.D., Ramireddy E., Vemireddy L.R.	Development of miRNA-SSR and target-SSR markers from yield-associate genes and their applicability in the assessment of genetic diversity and association mapping in rice (<i>Oryza sativa</i> L.).	Mol. Breed.	44(4)	30	2024		
54802	38563391	Chen T.T., Zhao P., Wang Y., Wang H.Q., Tang Z., Hu H., Liu Y., Xu J.M., Mao C.Z., Zhao F.J., Wu Z.C.	The plastid-localized lipoamide dehydrogenase 1 is crucial for redox homeostasis, tolerance to arsenic stress and fatty acid biosynthesis in rice.	New Phytol.	242(6)	2604-2619	2024	LPD2,LPD1	ptPDC-E3, OsptPDC-E3, OsLPD2,ptPDC-E3, OsptPDC-E3, OsLPD1
54803	38582819	Li M., Wu L., Shi Y., Wu L., Afzal F., Jia Y., Huang Y., Hu B., Chen J., Huang J.	Bioinformatics and Functional Analysis of OsASMT1 Gene in Response to Abiotic Stress.	Biochem. Genet.			2024		
54804	38589536	Zhong R., Zhou D., Phillips D.R., Adams E.R., Chen L., Rose J.P., Wang B.C., Ye Z.H.	A rice GT61 glycosyltransferase possesses dual activities mediating 2-O-xylosyl and 2-O-arabinosyl substitutions of xylan.	Planta	259(5)	115	2024	XYXT2,XXAT1	OsXYXT2,OsXXAT1
54805	38613951	Ran M., Wu J., Jiao Y., Li J.	Biosynthetic selenium nanoparticles (Bio-SeNPs) mitigate the toxicity of antimony (Sb) in rice (Oryza sativa L.) by limiting Sb uptake, improving antioxidant defense system and regulating stress-related gene expression.	J. Hazard. Mater.	470	134263	2024		
54806	38612852	Zheng C., Niu S., Yan Y., Zhou G., Peng Y., He Y., Zhou J., Li Y., Xie X.	Moderate Salinity Stress Affects Rice Quality by Influencing Expression of Amylose- and Protein-Content-Associated Genes.	Int J Mol Sci	25(7)		2024	GLUA2,WX1,AAP10D,HAP3K,CHALK5,WCR1	Glua2*, Glua2, GLUA-2, GluA-2, Glu20, GluA2, OsEnS-137,wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx,OsAAP10D, OsAAP6, AAP6, qPC1,OsHAP3K/OsNF-YB1, OsHAP3K, OsNF-YB1, NF-YB1, nf-yb1, OsLEC1, OsNF-YB-1, NFYB1, OsEnS-41,Chalk5, OsChalk5,OsFbox052, OsFbox52, Os_F0755, OsWCR1,  OsFBO2, FBO2
54807	38558163	Wu Y., Fu Y., Zhu Z., Hu Q., Sheng F., Du X.	The Mediator Subunit Osmed16 Interacts with the WRKY Transcription Factor OsWRKY45 to Enhance Rice Resistance Against Magnaporthe oryzae.	Rice (N Y)	17(1)	23	2024	WRKY62,KSL10,CYP99A3,DPF,SFR6,WRKY45	OsWRKY62, OsWRKY62.1, OsWRKY62.2, XB10, OsWRKY62-1, OsWRKY62-2,OsKSL10, KS10, OsKS10, OsTPS33, TPS33, TPS21, OsTPS21,OsCYP99A3,OsbHLH025, bHLH025, bHLH25,OsMed16_1, Med16_1, OsSFR6, OsMED16, MED16,OsWRKY45, OsWRKY45-1, OsWRKY45-2, WRKY45-1, WRKY45-2
54808	38611539	Zhou D., Ding M., Wen S., Tian Q., Zhang X., Fang Y., Xue D.	Characterization of the fatty acyl-CoA Reductase (FAR) Gene Family and Its Response to Abiotic Stress in Rice (<i>Oryza sativa</i> L.).	Plants (Basel)	13(7)		2024	FAR7,FAR1,FAR4,RALF2,FAR8,CER4,MS2,FAR6	OsFAR7,OsFAR1,OsFAR4,OsRALF-2, OsRALF2, RALF-2, OsFAR5, FAR5,OsFAR8,OsCER4, OsFAR3, FAR3,OsMS2, OsDPW, DPW, DPW1, OsDPW1, OsFAR2, FAR2,OsFAR6
54809	38581543	Fang R., He L., Wang Y., Wang L., Qian H., Yang S.	The Investigation of the Subtle Structural Discrepancies between Oryza Sativa Recombinant and Plasma-Derived Human Serum Albumins to Design a Novel Nanoparticle as a Taxane Delivery System.	Protein J.	43(3)	544-558	2024		
54810	38593802	Zhang X., Cai Q., Li L., Wang L., Hu Y., Chen X., Zhang D., Persson S., Yuan Z.	OsMADS6-OsMADS32 and REP1 control palea cellular heterogeneity and morphogenesis in rice.	Dev. Cell	59(11)	1379-1395.e5	2024		
54811	38578176	Tian Y., Li X., Xie J., Zheng Z., Shen R., Cao X., Wang M., Dong C., Zhu J.K.	Targeted G-to-T base editing for generation of novel herbicide-resistance gene alleles in rice.	J Integr Plant Biol	66(6)	1048-1051	2024		
54812	38615445	Karle S.B., Negi Y., Srivastava S., Suprasanna P., Kumar K.	Overexpression of OsTIP1;2 confers arsenite tolerance in rice and reduces root-to-shoot translocation of arsenic.	Plant Physiol. Biochem.	210	108608	2024		
54813	38653244	Kong X., Yu S., Xiong Y., Song X., Nevescanin-Moreno L., Wei X., Rao J., Zhou H., Bennett M.J., Pandey B.K., Huang G.	Root hairs facilitate rice root penetration into compacted layers.	Curr. Biol.	34(10)	2039-2048.e3	2024		
54814	38664971	Zhao T., Ma S., Kong Z., Zhang H., Wang Y., Wang J., Liu J., Feng W., Liu T., Liu C., Liang S., Lu S., Li X., Zhao H., Lu C., Latif M.Z., Yin Z., Li Y., Ding X.	Recognition of the inducible, secretory small protein OsSSP1 by the membrane receptor OsSSR1 and the co-receptor OsBAK1 confers rice resistance to the blast fungus.	Mol Plant	17(5)	807-823	2024	SSR1,DIR35,SG2	OsSSR1,OsDIR35, OsjDIR35, OsSSP1, SSP1,OsSERK1, SERK1, OsBAK1, BAK1, OsSERK1/OsBAK1, OsBISERK1, BISERK1, OsSerk1, OsBAK1-1, 08SG2/OsBAK1, 08SG2, OsSG2
54815	38685708	Liu J., Xu W., Zhang Q., Liao W., Li L., Chen S., Yang J., Wang Z., Xu F.	OsPHR2-mediated recruitment of Pseudomonadaceae enhances rice phosphorus uptake.	Plant Commun	5(8)	100930	2024	PHR2	OsPHR2, Os-PHR2
54816	38974869	Liu M., Zhang X., Xu W., Kang G., Liu Y., Liu X., Ren W., Zhao J., Yang J.	Efficient and precise genomic deletion in rice using enhanced prime editing.	Abiotech	5(2)	214-218	2024		
54817	38656724	Liu L., Li Y., Wang Q., Xu X., Yan J., Wang Y., Wang Y., Shah S.M.A., Peng Y., Zhu Z., Xu Z., Chen G.	Constructed Rice Tracers Identify the Major Virulent Transcription Activator-Like Effectors of the Bacterial Leaf Blight Pathogen.	Rice (N Y)	17(1)	30	2024	XA13,SWEET13,XA41	xa13, Xa13, Os8N3, Os-8N3, 8N3, OsSWEET11, SWEET11, OsSWEET11/Xa13, Xa13/Os8N3/SWEET11, Os8N3/Xa13, OsSWEET11/Os8N3, OsSWEET11a, SWEET11a,OsSWEET13, Xa25(t), Xa25, OsMtN3, Xa25/SWEET13, OsSWEET13/XA25,OsSWEET14, SWEET14, Os11N3, Os-11N3, 11N3, Xa41(t), xa41, Os11N3/SWEET14, OsSWEET14/Os11N3
54818	38671025	Xia C., Liang G., Chong K., Xu Y.	Author Correction: The COG1-OsSERL2 complex senses cold to trigger signaling network for chilling tolerance in japonica rice.	Nat Commun	15(1)	3536	2024		
54819	38644479	Miao M., Shi X., Zheng X., Wu B., Miao Y.	Characterization of SIPs-type aquaporins and their roles in response to environmental cues in rice (Oryza sativa L.).	BMC Plant Biol.	24(1)	305	2024	SIP1;2,SIP1;1	OsSIP1;2, OsSTA98, OsSIP2, SIP2,OsSIP1;1, SIP1-1, OsSIP1, SIP1
54820	38654179	Wang Y., Liu H., Bai L., Liu R., Jiang H., Tan J., Chen J.	Overexpression of OsNAR2.1 by OsNAR2.1 promoter increases drought resistance by increasing the expression of OsPLD&#x3b1;1 in rice.	BMC Plant Biol.	24(1)	321	2024	PLDalpha1,NAR2.1	RPLD1, PLD1, OsPLDalpha1, OsC2DP2, C2DP2,OsNAR2.1, OsNRT3.1A
54821	38708347	Cao G., Huang H., Yang Y., Xie B., Tang L.	Analysis of drought and heat stress response genes in rice using co-expression network and differentially expressed gene analyses.	PeerJ	12	e17255	2024	UGT83A1,CPN60ALPHA1,HSP22A,DJC53,BAG6,MBF1C,HSP21.9	OsUGT83A1,OsCPn60alpha1, OsCPn60a1, CPn60a1,hsp20, HSP22a, OsHSP22a, HSP23.2, OsHSP23.2,OsDjC53, DjC53,OsBAG6,OsMBF1C,hsp20, OsHSP21.9 
54822	38684939	Bi Y., Yu Y., Mao S., Wu T., Wang T., Zhou Y., Xie K., Zhang H., Liu L., Chu Z.	Comparative transcriptomic profiling of the two-stage response of rice to Xanthomonas oryzae pv. oryzicola interaction with two different pathogenic strains.	BMC Plant Biol.	24(1)	347	2024	DSR2,SPX3,CDP3.1 ,SDRLK7	OsDSR2,OsSPX3,OsEnS-57, EnS-57, OsCDP3.1, OsCDP3.10, CDP3.10,SDRLK-7, OsSDRLK-7, OsSDRLK7
54823	38658155	Song Y., Yu Y., Tan C., Meng Q., Gou Y., Duan X.	[Identification and expression profile analysis of rice <i>CRF</i> gene family].	Sheng Wu Gong Cheng Xue Bao	40(4)	1157-1169	2024		
54824	38685964	Zhao M., Gao Z., Kuang C., Chen X.	Partial root-zone drying combined with nitrogen treatments mitigates drought responses in rice.	Front Plant Sci	15	1381491	2024	GRX4,GLN1;1,_,YL1,RSUS7,YSS2	OsGRX4, OsGrx_C7, Grx_C7,OsGLN1;1, GS1, RGS28, OsGS1;1, GS1;1, OsGS, GS1, OsGS1, GLN1-1, OsGS1-1, GS1-1, GS1.1, OsGS1.1,OsNIA2, NIA2, OsNR2, NR2, OsNR3, NR3, OsNR1.2, NR1.2,MTC, OsMTC, YGL8, OsYGL8, OsCRD1, CRD1, OsCRD, CRD, YL-1, PNZIP, OsPNZIP,SUS7, SS7, OsScS7, RSs7, RSus7, OsSUS7,OsNDPK2, NDPK2, BIP114
54825	38622172	Lian S., Chen Y., Zhou Y., Feng T., Chen J., Liang L., Qian Y., Huang T., Zhang C., Wu F., Zou W., Li Z., Meng L., Li M.	Functional differentiation and genetic diversity of rice&#xa0;cation exchanger (CAX) genes and their potential use in rice improvement.	Sci Rep	14(1)	8642	2024	CAX1C,CAX2,CAX1A,CAX4,CAX3	OsCAX1c, CAX1c, CAX4, OsNCX5, OsNCX5.1, OsNCX5.2, NCX5,OsCAX2, CAX5, OsNCX7, OsNCX7.1, OsNCX7.2, NCX7, OsVCX2, OsOSCA1.2, OSCA1.2,OsCAX1a, CAX1a, CAX1, OsCAX1, OsNCX2, OsNCX2.1, OsNCX2.2, NCX2, OsVCAX1a,CAX2, OsCAX2, OsCAX4, OsSTA47, OsNCX3, NCX3,OsCAX3, CAX6, OsNCX9, OsNCX9.1, OsNCX9.2, NCX9
54826	38674507	Liu P., Feng W., Wang T., Zhang H., Mao S., Zhang H., Huang W., Liu H., Feng S., Chu Z.	Investigation of Imidazolinone Herbicide Resistance Gene with KASP Markers for <i>Japonica</i>/<i>Geng</i> Rice Varieties in the Huanghuaihai Region of China.	Plants (Basel)	13(8)		2024	ALS	OsALS, AHAS, OsALS1, ALS1
54827	38674497	Xu M., Zhang W., Jiao Y., Yang Q., Chen M., Cheng H., Cheng B., Zhang X.	<i>OsSCYL2</i> is Involved in Regulating ABA Signaling-Mediated Seed Germination in Rice.	Plants (Basel)	13(8)		2024	TOR,SCYL2	OsTOR,OsSCYL2
54828	38642102	Huang J., Qiao Z., Yu H., Lu Z., Chen W., Lu J., Wu J., Bao Y., Shahid M.Q., Liu X.	OsRH52A, a DEAD-Box protein, is required for embryo sac development by regulating functional megaspore specification in rice.	J. Exp. Bot.			2024	HSA1B,MSP1,ZIP4,MFS1,NRFG4	hsa1(t), s(t), hst49, OsHSA1B,Msp1, OsMSP1, OsTMS15, TMS15,OsZIP4, SPO22, OsSPO22,MND1, OsMND1, OsMFS1,OsRH52A, RH52A, OsNRFG4
54829	38706863	Myint Z.M., Koide Y., Takanishi W., Ikegaya T., Kwan C., Hikichi K., Tokuyama Y., Okada S., Onishi K., Ishikawa R., Fujita D., Yamagata Y., Matsumura H., Kishima Y., Kanazawa A.	<i>OlCHR,</i> encoding a chromatin remodeling factor, is a killer causing hybrid sterility between rice species <i>Oryza sativa</i> and <i>O.&#xa0;longistaminata</i>.	iScience	27(5)	109761	2024	S13	CSB, OsCHR745, CHR745, OlCHR
54830	38634166	Tang J., Lei D., Yang J., Chen S., Wang X., Huang X., Zhang S., Cai Z., Zhu S., Wan J., Jia G.	OsALKBH9-mediated m6A demethylation regulates tapetal PCD and pollen exine accumulation in rice.	Plant Biotechnol. J.	22(9)	2410-2423	2024	ALKBH5,TDR,GAMYB	OsALKBH5, OsALKBH9A, ALKBH9A, OsALKBH9, ALKBH9,tdr, OsbHLH005, bHLH005, OsbHLH5, bhlh5, TDR1, OsTDR, OsTDR1, OsMYC5, MYC5,OsGAMYB, GAM1, OsGAMyb, Os-MYBGA, Os GAMYB, OsMYBGA, MYBGA, Os2R_MYB15, 2R_MYB15 
54831	38625424	Sreenayana B., Mondal K.K., Mathiyalagan N., Shanmugam K.N., Kumar S., Shrinivas Reddy M., Mani C.	Molecular characterization and evaluation of novel management options for Burkholderia glumae BG1, the causative agent of panicle blight of rice (Oryza sativa L.).	Mol. Biol. Rep.	51(1)	519	2024		
54832	38674525	Pan T., Jin H., Zhou C., Yan M.	Rice Serine Hydroxymethyltransferases: Evolution, Subcellular Localization, Function and Perspectives.	Plants (Basel)	13(8)		2024	SHMT1,CADT1,SHMT5,SHMT3,SHMT2	OsSHM1, SHM1, OsSHMT1, CDM1, OsCDM1, OsSHTM3, SHTM3, OsSHMT, SHMT,OsSHM4, SHM4, OsSHMT4, SHMT4, OsSHTM1, SHTM1, OsCADT1, FLO20, OsFLO20,OsSHM5, SHM5, OsSHMT5, OsSHTM2, SHTM2,OsSHM3, SHM3, OsSHMT3, OsSHTM5, SHTM5,OsSHM2, SHM2, OsSHMT2,OsSHTM4, SHTM4
54833	38627617	Chen M., Feng S., Lv H., Wang Z., Zeng Y., Shao C., Lin W., Zhang Z.	OSCIPK2 mediated rice root microorganisms and metabolites to improve plant nitrogen uptake.	BMC Plant Biol.	24(1)	285	2024	CIPK02	OsCIPK02, CIPK2, OsCIPK2, OsSnRK3.26, SnRK3.26
54834	38629772	Yan Y., Wang H., Bi Y., Wang J., Noman M., Li D., Song F.	OsATL32 ubiquitinates the reactive oxygen species-producing OsRac5-OsRbohB module to suppress rice immunity.	J Integr Plant Biol	66(7)	1459-1480	2024	PP130	OsPP130, OsPTEN, PTEN
54835	38688114	Rathore R.S., Mishra M., Pareek A., Singla-Pareek SL.	Concurrent improvement of rice grain yield and abiotic stress tolerance by overexpression of cytokinin activating enzyme LONELY GUY (OsLOG).	Plant Physiol. Biochem.	211	108635	2024		
54836	38643573	Singh P., Kumar A., Singh T., Anto S., Indoliya Y., Tiwari P., Behera S.K., Chakrabarty D.	Targeting Osnip3;1 via CRISPR/Cas9: A strategy for minimizing arsenic accumulation and boosting rice resilience.	J. Hazard. Mater.	471	134325	2024		
54837	38622442	Xie T., Hu W., Shen J., Xu J., Yang Z., Chen X., Zhu P., Chen M., Chen S., Zhang H., Cheng J.	allantoate amidohydrolase OsAAH is Essential for Preharvest Sprouting Resistance in Rice.	Rice (N Y)	17(1)	28	2024	PHS39	OsAAH, AAH, OsPHS39
54838	38630137	Im J.H., Choi C., Jung M.Y., Park S.R., Hwang D.J.	The OsICS1 is directly regulated by OsWRKY6 and increases resistance against Xanthomonas oryzae pv. oryzae.	Planta	259(6)	124	2024		
54839	38625509	Prathi N.B., Durga Rani CV., Prakasam V., Mohan Y.C., Mahendranath G., Sri Vidya GK., Neeraja C.N., Sundaram R.M., Mangrauthia S.K.	Oschib1 gene encoding a GH18 chitinase confers resistance against sheath blight disease of rice caused by Rhizoctonia solani AG1-IA.	Plant Mol. Biol.	114(3)	41	2024		
54840	38790274	Zhou X., Qiang C., Chen L., Qing D., Huang J., Li J., Pan Y.	The Landscape of Presence/Absence Variations during the Improvement of Rice.	Genes (Basel)	15(5)		2024	SFL1,NAL1	OsSFL1,nal1, cul1, GPS, SPIKE, SPIKE/LSCHL4/NAL1/GPS, SPIKE/NAL1, LSCHL4, OsNAL1
54841	38752706	Zhou Z., Jiang Q., Qiu Z., Hou X., Yang X., Yang Y., Hao T., Guo D., Wang J., Li Y., Liu Q., Ling X., Zhang B.	Differential Resistance to acetyl-CoA carboxylase Inhibitors in Rice: Insights from Two Distinct Target-Site Mutations.	J. Agric. Food Chem.	72(21)	12029-12044	2024		
54842	38759757	Yu X., Wang L., Xie Y., Zhu Y., Xie H., Wei L., Xiao Y., Cai Q., Chen L., Xie H., Zhang J.	OsBBP1, a newly identified protein containing DUF630 and DUF632 domains confers drought tolerance in rice.	Plant Sci.	345	112119	2024	BBP1	OsBBP1
54843	38761113	Han J., Yang X., Cai Y., Qiao F., Tao J., Zhu X., Mou Q., An J., Hu J., Li Z., Guan Y.	MORN motif-containing protein osmorn1 and OsMORN2 are crucial for rice pollen viability and cold tolerance.	Plant J.	119(2)	998-1013	2024	MORN1,MORN2	OsMORN1,OsMORN2
54844	38739288	Lv S., Tang X., Jiang L., Zhang J., Sun B., Liu Q., Mao X., Yu H., Chen P., Chen W., Fan Z., Li C.	OsLSC6 Regulates leaf sheath Color and Cold Tolerance in Rice Revealed by Metabolite Genome Wide Association Study.	Rice (N Y)	17(1)	34	2024	LSC6	UGT, OsUFGT/Os3GT, OsUF3GT, OsUFGT, UFGT, OsLSC6, UF3GT
54845	38772322	Duan X., Xu Y., Liu Y., Xu X., Wen L., Fang J., Yu Y.	Iron transporter1 OsIRT1 positively regulates saline-alkaline stress tolerance in Oryza sativa.	J. Plant Physiol.	299	154272	2024		
54846	38743131	Zhao M., Liu Z., Gan J., Yang C., Lu A., Han Q., Yang H., Xu Y., Sun G., Wu D.	Identification and expression analysis of XIP gene family members in rice.	Genetica	152(2-3)	83-100	2024		
54847	38759408	Su X., Li C.Y., Liu X.S., Zhang Y.P.	The role of OsBZR4 as a brassinosteroid-signaling component in mediating atrazine and isoproturon degradation in rice.	J. Hazard. Mater.	473	134625	2024		
54848	38747085	Chen S., Tao Z., Shen Y., Yang R., Yan S., Chen Z., Sun B., Yang X.	Magnaporthe oryzae infection triggers rice resistance to brown planthopper through the influence of jasmonic acid on the flavonoid biosynthesis pathway.	Insect Science			2024		
54849	38817942	Suganami M., Yoshida H., Yoshida S., Kawamura M., Koketsu E., Matsuoka M., Kojima S.	Redefining awn development in rice through the breeding history of Japanese awn reduction.	Front Plant Sci	15	1370956	2024	RAE2 	OsEPFL1, EPFL1, GAD1, OsGAD1, OsRAE2, GLA, OsGLA, GAD1/RAE2, OgRAE2
54850	38465908	Hu Y., Lin Y., Bai J., Xu X., Wang Z., Ding C., Ding Y., Chen L.	AMPK activator 991 specifically activates SnRK1 and thereby affects seed germination in rice.	J. Exp. Bot.	75(10)	2917-2932	2024		
54851	38757819	Yoshimura S., Yoshihisa A., Okamoto Y., Hirano H., Nakai Y., Yamaguchi K., Kawasaki T.	Rice SRO1a contributes to Xanthomonas TAL effector-mediated expression of host susceptible gene.	Plant Cell Physiol.			2024	SRO1B	OsSRO1b 
54852	38791594	Gu F., Han Z., Zou X., Xie H., Chen C., Huang C., Guo T., Wang J., Wang H.	Unveiling the Role of RNA recognition motif Proteins in Orchestrating Nucleotide-Binding Site and Leucine-Rich Repeat Protein Gene Pairs and Chloroplast Immunity Pathways: Insights into Plant Defense Mechanisms.	Int J Mol Sci	25(10)		2024	PIK,CRP4,BIHD1	Pik, RMg8, Pi-k, Pik-2, Pik-1, Pik1, Pik2, Pik-H4, Pikp-1, Pikh-1, Pik1-H4, Pikh-2, Pik2-H4,OsCRP4, cpRNP4, OsRRM2, RRM2,OsBIHD1
54853	38879308	Wang X., Li S., Liu D., Li H., Song R., Hu D.	Novel aurone-derived piperazine sulfonamides: Development and mechanisms of action as immunostimulants against plant bacterial diseases.	Pestic Biochem Physiol	202	105955	2024		
54854	38471799	Wang J., Zhang H., Wang Y., Meng S., Liu Q., Li Q., Zhao Z., Liu Q., Wei C.	Regulatory loops between rice transcription factors OsNAC25 and OsNAC20/26 balance starch synthesis.	Plant Physiol.	195(2)	1365-1381	2024		
54855	38891303	Mao K., Li C., Zhai H., Wang Y., Lou Y., Xue W., Zhou G.	<i>OsRCI-1</i>-Mediated GLVs Enhance Rice Resistance to Brown Planthoppers.	Plants (Basel)	13(11)		2024	LOX11	OsLOX11, OsRCI-1, RCI-1, OsBphi262, OsLOX12, OsLOX2.2, LOX2.2, LOX2.1, OsLOX2.1, OsLOX14, LOX14
54856	38783192	Jin F., Xie P., Li Z., Wu B., Huang W., Fang Z.	Blocking of amino acid transporter OsAAP7 promoted tillering and yield by determining basic and neutral amino acids accumulation in rice.	BMC Plant Biol.	24(1)	447	2024	AAP11F	OsAAP11F, OsAAP7, AAP7, FCO7
54857	38810885	Li J., Chen S., Zhang Y., Zhao W., Yang J., Fan Y.	A novel PLS-DYW type PPR protein OsASL is essential for chloroplast development in rice.	Plant Sci.	345	112134	2024		
54858	38891973	Wang Y., Wang H., Zhang L., Wang Y., Wei S., Wang L.	Mechanism Analysis of OsZF8-Mediated Regulation of Rice Resistance to Sheath Blight.	Int J Mol Sci	25(11)		2024	PRB1,ZOS2-17	OsPRB1, Prb1,OsZOS2-17, OsZF8, ZF8
54859	38892140	Lee H.Y., Back K.	Melatonin-Regulated Chaperone Binding Protein Plays a Key Role in Cadmium Stress Tolerance in Rice, Revealed by the Functional Characterization of a Novel Serotonin <i>N</i>-Acetyltransferase 3 (<i>SNAT3</i>) in Rice.	Int J Mol Sci	25(11)		2024	BIP4,BIP1,SNAT3,BIP5	OsBiP4, BiP4, OsMed37_5, Med37_5, BiP2,OsBiP1, BiP1, BiP, Bip3, OsBiP3, BIP1/OsBIP3, OsMed37_2, Med37_2 ,OsSNAT3,OsBiP5, OsBiP, BiP, BiP5, OsMed37_7, Med37_7
54860	38773134	Bai C., Wang G.J., Feng X.H., Gao Q., Wang W.Q., Xu R., Guo S.J., Shen S.Y., Ma M., Lin W.H., Liu C.M., Li Y., Song X.J.	OsMAPK6 phosphorylation and CLG1 ubiquitylation of GW6a non-additively enhance rice grain size.through stabilization of the substrate.	Nat Commun	15(1)	4300	2024	HRZ2,DSG1,GW6A	OsRFPH2-24, OsHRZ2, OsRING150, RING150, CLG1, OsCLG1,OsMAPK6, MAPK6, OsMPK6, OsSIPK, SIPK, OsMAPK1, MAPK1, MPK1, OsMPK1, MPK6, OsDSG1,OsglHAT1, glHAT1, GW6a, OsGW6a, OsGNAT1, GNAT1
54861	38770581	Lu L., Zhang J., Zheng X., Xia N., Diao Z., Wang X., Chen Z., Tang D., Li S.	OsMPK12 positively regulates rice blast resistance via OsEDC4-mediated transcriptional regulation of immune-related genes.	Plant Cell Environ.			2024	WD40-128,DCP1	OsWD40-128,  OsDWD18, DWD18, OsEDC4, EDC4,OsDCP1
54862	38892138	Xie Q., Zhang Y., Wu M., Chen Y., Wang Y., Zeng Q., Han Y., Zhang S., Zhang J., Chen T., Cai M.	Identification and Functional Analysis of <i>KH</i> Family Genes Associated with Salt Stress in Rice.	Int J Mol Sci	25(11)		2024	KH2,C3H44,KH24,KH30,KH6,C3H14,KH31,KH13,KH8,KH25,KH7,PEP,KH23,KH1,KH27,KH4,KH26,KH3,KH11,KH29,SPIN1,KH20,KH22,KH15,C3H31,KH12,KH18,KH14,KH10,KH5,KH19	OsKH2,OsC3H44, OsKH21, KH21,OsKH24,OsKH30,OsKH6,OsC3H14, OsKH9, KH9,OsKH31,OsKH13,OsKH8,OsKH25,OsKH7,OsPEP, OsKH28, KH28,OsKH23,OsKH1,OsKH27,OsKH4,OsKH26,OsKH3,OsKH11,OsKH29,Spin1, OsSPIN1, OsKH16, KH16,OsKH20,OsKH22,OsKH15,OsC3H31, OsKH17, KH17,OsKH12,OsKH18,OsKH14,OsKH10,OsKH5,OsKH19
54863	38891270	Lu Z., Huang W., Zhu L., Liang G., Huang Y., Wu J., Chen R., Li X., Liu X.	Cytological Observation and RNA-Seq Analyses Reveal <i>miR9564</i> and Its Target Associated with pollen sterility in Autotetraploid Rice.	Plants (Basel)	13(11)		2024	MIR528,ARPS,M2T,MIR27874,MIR9564,DGS1	miR528, Osa-miR528, OsmiR528, OsMIR528, osa-MIR528, miR528*, osa-miR528, osa-miR528-5p, MIR528-T1, MIR528-T2,OsARPS,OsM2T,miR27874, Osa-miR27874, OsmiR27874,miR9564, Osa-miR9564, OsmiR9564,OsRPC53, RPC53, OsRPC4, RPC4, OsDGS1
54864	38781974	Zhang C., Fang H., Wang J., Tao H., Wang D., Qin M., He F., Wang R., Wang G.L., Ning Y.	The rice E3 ubiquitin ligase-transcription factor module targets two trypsin inhibitors to enhance broad-spectrum disease resistance.	Dev. Cell	59(15)	2017-2033.e5	2024		
54865	38780111	Han Y., Hu Q., Gong N., Yan H., Khan N.U., Du Y., Sun H., Zhao Q., Peng W., Li Z., Zhang Z., Li J.	Natural variation in MORE GRAINS 1 regulates grain number and grain weight in rice.	J Integr Plant Biol	66(7)	1440-1458	2024		
54866	38445796	Liu S., Zheng Y., Zhao L., Gulam M., Ullah A., Xie G.	CALMODULIN-LIKE16 and PIN-LIKES7a cooperatively regulate rice seedling primary root elongation under chilling.	Plant Physiol.	195(2)	1660-1680	2024		
54867	38927632	Zeng X., Yang S., Li F., Yao Y., Wu Z., Xue Y., Liu Y.	Genome-Wide Identification of <i>OsZIPs</i> in Rice and Gene Expression Analysis under Manganese and Selenium Stress.	Genes (Basel)	15(6)		2024	_,ZIP1,IRT1,ZIP14,ZIP10,ZIP11,IRT2,ZIP8,ZIP13,ZIP2,ZIP4,ZIP7,ZIP5,ZIP3,ZIP6,ZIP16	OsZIP9, ZIP9,OsZIP1,OsIRT1, ZIP10, OsZIP10, OsZIP12, ZIP12,OsZIP14,OsZIP10,OsZIP11,OsIRT2, OsIRT1, OsZIP15, ZIP15,OsZIP8, OsZIP1, ZIP1, OsZIP13, ZIP13,OsZIP13, OsZIP8, ZIP8,OsZIP2, OsZIP11, ZIP11 ,OsZIP4,OsZIP7,OsZIP5, OsZIP8, ZIP8, OsZIP9,OsZIP3,OsZIP6,OsZIP16
54868	38802369	Chen K., Wang Q., Yu X., Wang C., Gao J., Zhang S., Cheng S., You S., Zheng H., Lu J., Zhu X., Lei D., Jian A., He X., Yu H., Chen Y., Zhou M., Li K., He L., Tian Y., Liu X., Liu S., Jiang L., Bao Y., Wang H., Zhao Z., Wan J.	OsSRF8 interacts with OsINP1 and OsDAF1 to regulate pollen aperture formation in rice.	Nat Commun	15(1)	4512	2024	AP1,INP1,SRF8	LECRK-S.7, OsLecRK-S.7, OsDAF1, DAF1, OsLecRK5, LecRK5, OsAP1,OsINP1,OsSRF8
54869	38812277	Tian L., Hao Y.M., Guo R., Guo H.R., Cheng J.F., Liu T.R., Liu H., Lu G., Wang B.	Two lysin motif extracellular (LysMe) proteins are deployed in rice to facilitate arbuscular mycorrhizal symbiosis.	New Phytol.	243(2)	720-737	2024	AM3	OsAM3, OsLysMe2, LysMe2
54870	38819744	Yin M., Zheng Z., Zhang Y., Wang S., Zuo L., Lei Y., Zhao Y., Zhao X., Fu B., Shi Y., Xu J., Wang W.	Identification of Key Genes and Pathways for Anaerobic Germination Tolerance in Rice Using Weighted Gene Co-Expression Network Analysis (WGCNA) in Association with Quantitative Trait Locus (QTL) Mapping.	Rice (N Y)	17(1)	37	2024	AC7,NRP5	RAc7, OsAc7,OsNRP5
54871	38818952	Zhao L., Liu Y., Zhu Y., Chen S., Du Y., Deng L., Liu L., Li X., Chen W., Xu Z., Xiong Y., Ming Y., Fang S., Chen L., Wang H., Yu D.	Transcription factor OsWRKY11 induces rice heading at low concentrations but inhibits rice heading at high concentrations.	J Integr Plant Biol	66(7)	1385-1407	2024		
54872	38431526	Hou X.L., Han X., Meng Y., Wang L., Zhang W., Yang C., Li H., Tang S., Guo Z., Liu C., Qin Y., Zhang S., Shui G., Cao X., Song X.	Acyl carrier protein OsMTACP2 confers rice cold tolerance at the booting stage.	Plant Physiol.	195(2)	1277-1292	2024	CTB18	OsMTACP2, MTACP2, OsCTB18
54873	38891283	Li S., Hui L., Li J., Xi Y., Xu J., Wang L., Yin L.	OsMGD1-mediated Membrane Lipid Remodeling Improves salt tolerance in Rice.	Plants (Basel)	13(11)		2024	MGD1	OsMGD1
54874	38725246	Yu M., Kuang Y., Wang C., Wu X., Li S., Zhang D., Sun W., Zhou X., Ren B., Zhou H.	Diverse nucleotide substitutions in rice base editing mediated by novel TadA variants.	Plant Commun	5(8)	100926	2024		
54875	38732268	Yu S., Li S., Wang W., Tang D.	oscamta3 Negatively Regulates disease resistance to <i>Magnaporthe oryzae</i> by Associating with OsCAMTAPL in Rice.	Int J Mol Sci	25(9)		2024	CAMTA3,ALDH2B1  ,BZR1,CAMTA4,SCT1,CAMTA,CAMTAPL,CAMTA6,CBT	OsCAMTA3, SCT2, OsSCT2, OsCAMTA2, CAMTA2,OsALDH2B1, OsALDH2b, ALDH2b,OsBZR1, Os BZR1, OsBES1-6, BES1-6,OsCAMTA4, OsCAMTA6, CAMTA6,OsSCT1, OsCAMTA1, CAMTA1,OsCAMTA, qSCT1, OsCAMTA4, CAMTA4,OsCAMTAPL,OsCAMTA6, OsCAMTA3, CAMTA3,OsCBT, DLN185, OsDLN185, OsCAMTA5, CAMTA5
54876	38730437	Zhao Y., Zhu X., Shi C.M., Xu G., Zuo S., Shi Y., Cao W., Kang H., Liu W., Wang R., Ning Y., Wang G.L., Wang X.	OsEIL2 balances rice immune responses against (hemi)biotrophic and necrotrophic pathogens via the salicylic acid and jasmonic acid synergism.	New Phytol.	243(1)	362-380	2024		
54877	38725797	Peng B., Zhang Q., Liu Y., Zhao Q., Zhao J., Zhang Z., Sun X., Peng J., Sun Y., Song X., Guo G., Huang Y., Pang R., Zhou W., Wang Q.	<i>OsAAP8</i> mutation leads to significant improvement in the nutritional quality and appearance of rice grains.	Mol. Breed.	44(5)	34	2024		
54878	38901227	Tripathi S., Sharma S., Rai P., Mahra S., Tripathi D.K., Sharma S.	Synergy of plant growth promoting rhizobacteria and silicon in regulation of AgNPs induced stress of rice seedlings.	Plant Physiol. Biochem.	213	108720	2024		
54879	38728942	Zhu S., Sun S., Zhao W., Yang X., Chen Z., Mao H., Sheng L.	Comprehensive physiology and proteomics analysis revealed the resistance mechanism of rice (Oryza sativa L) to cadmium stress.	Ecotoxicol. Environ. Saf.	278	116413	2024		
54880	38735139	Im G., Choi D.	Molecular and physiological characterization of AIP1, encoding the acetolactate synthase regulatory subunit in rice.	Biochem. Biophys. Res. Commun.	718	150087	2024	AIP1	OsAIP1
54881	38717621	Babbar A., Rawat N., Kaur P., Singh N., Lore J.S., Vikal Y., Neelam K.	Precision mapping and expression analysis of recessive bacterial blight resistance gene xa-45(t) from Oryza glaberrima.	Mol. Biol. Rep.	51(1)	626	2024		
54882	38717679	Hu Z., Huang X., Xia H., Zhang Z., Lu H., Wang X., Sun Y., Cui M., Yang S., Kant S., Xu G., Sun S.	Transcription factor OsSHR2 regulates rice architecture and yield per plant in response to nitrogen.	Planta	259(6)	148	2024		
54883	38720462	Cui S., Song P., Wang C., Chen S., Hao B., Xu Z., Cai L., Chen X., Zhu S., Gan X., Dong H., Hu Y., Zhou L., Hou H., Tian Y., Liu X., Chen L., Liu S., Jiang L., Wang H., Jia G., Zhou S., Wan J.	The RNA binding protein EHD6 recruits the m6A reader YTH07 and sequesters OsCOL4 mRNA into phase-separated ribonucleoprotein condensates to promote rice flowering.	Mol Plant	17(6)	935-954	2024	EF1,COL4,EHD6,ECT8	Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,OsCOL4, OsD, OsBBX5, OsCOL4/OsD, OsCCT06, BBX5, CCT06,OML4, OsML4, ML4, OsEHD6,OsECT8, OsYTH07, YTH07
54884	38698342	Zhu S., Sun S., Zhao W., Yang X., Mao H., Sheng L., Chen Z.	Utilizing transcriptomics and proteomics to unravel key genes and proteins of Oryza sativa seedlings mediated by selenium in response to cadmium stress.	BMC Plant Biol.	24(1)	360	2024	CABE,PSAD,GSTF1,CP29,LHCB2.1,GSTU11,G6PDH4,PSBO,PRXIIC	CabE, OsCabE, OsLhcb7, Lhcb7,PsaD, OsPsaD,OsGSTF1, RGSI,OsCP29, LHCB4, Lhcb4, OsLHCB4,LHCB, LHCP II, Lhcb2, OsLhcb2, Lhcb2.1, OsLhcb2.1 ,OsGSTU11,OsG6PDH4,PsbO, psbO, OsPSBO,OsPrxII C, PrxII C, OsPrxIIC, PrxIIC
54885	38447361	Li J., Chen W., Xu K., Xie W., Qi H., Tang Y., Wang S., Deng T., Morel J.L., Qiu R.	Fe(III) transporter OsYSL15 may play a key role in the uptake of Cr(III) in rice (Oryza sativa L.).	J. Hazard. Mater.	469	133531	2024		
54886	38723179	Deng D., Guo Y., Guo L., Li C., Nie Y., Wang S., Wu W.	Functional Divergence in Orthologous Transcription Factors: Insights from AtCBF2/3/1 and OsDREB1C.	Mol. Biol. Evol.	41(5)		2024	DREB1C	OsDREB1C, CBF1, ERF26, OsERF026, OsERF#026, OsERF26, AP2/EREBP#098, AP2/EREBP98, OsCBF2, CBF2
54887	38704640	Dong K., Wu F., Cheng S., Li S., Zhang F., Xing X., Jin X., Luo S., Feng M., Miao R., Chang Y., Zhang S., You X., Wang P., Zhang X., Lei C., Ren Y., Zhu S., Guo X., Wu C., Yang D.L., Lin Q., Cheng Z., Wan J.	OsPRMT6a-mediated arginine methylation of OsJAZ1 regulates jasmonate signaling and spikelet development in rice.	Mol Plant	17(6)	900-919	2024		
54888	38703081	Hu W., Wang R., Hao X., Li S., Zhao X., Xie Z., Wu S., Huang L., Tan Y., Tian L., Li D.	OsLCD3 interacts with OsSAMS1 to regulate grain size via ethylene/polyamine homeostasis control.	Plant J.	119(2)	705-719	2024	LCD3	OsLCD3
54889	38432090	Sun J.Y., Guo R., Jiang Q., Chen C.Z., Gao Y.Q., Jiang M.M., Shen R.F., Zhu X.F., Huang J.	Brassinosteroid decreases cadmium accumulation via regulating gibberellic acid accumulation and Cd fixation capacity of root cell wall in rice (Oryza sativa).	J. Hazard. Mater.	469	133862	2024		
54890	38714129	Wu Y., Sun Y., Wang W., Xie Z., Zhan C., Jin L., Huang J.	OsJAZ10 negatively modulates the drought tolerance by integrating hormone signaling with systemic electrical activity in rice.	Plant Physiol. Biochem.	211	108683	2024		
54891	38937693	Su C., Wang J., Feng J., Jiang S., Man F., Jiang L., Zhao M.	OsAlR3 regulates aluminum tolerance through promoting the secretion of organic acids and the expression of antioxidant genes in rice.	BMC Plant Biol.	24(1)	618	2024	ALR3	OsAlR3
54892	38944994	Li J., Wang L.Y., Huang H.C., Yang W., Dai G.Y., Fang Z.Q., Zhao J.L., Xia K.F., Zeng X., He M.L., Yao N., Zhang M.Y.	Endoplasmic reticulum stress response modulator OsbZIP39 regulates cadmium accumulation via activating the expression of defensin-like gene OsCAL2 in rice.	J. Hazard. Mater.	476	135007	2024		
54893	38916708	Zhao C., Li Q., Ge Q., Chen R., Yu H., Wu J., Liu X., Lu Z.	Lectin Receptor-Like Protein Kinase OsNRFG6 is Required for Embryo Sac Development and Fertilization in Neo-Tetraploid Rice.	Rice (N Y)	17(1)	41	2024	MEL1,NRFG6,DES1,LOG1	mel1, OsMEL1, MEAL1, OsMEAL1, OsAGO5c ,OsNRFG6, SDRLK-38, OsSDRLK-38, SDRLK38, OsSDRLK38,OsDES1,OsLOG1, LOG, Log, log, OsLOG
54894	38589996	Ji C., Li H., Ding J., Yu L., Jiang C., Wang C., Wang S., Ding G., Shi L., Xu F., Cai H.	Rice transcription factor OsWRKY37 positively regulates flowering time and grain fertility under copper deficiency.	Plant Physiol.	195(3)	2195-2212	2024		
54895	39000251	Kim M.S., Le V.T., Jung Y.J., Kang K.K., Cho Y.G.	<i>OsPUB9</i> Gene Edited by CRISPR/Cas9 Enhanced Resistance to Bacterial Leaf Blight in Rice (<i>Oryza sativa</i> L.).	Int J Mol Sci	25(13)		2024	PUB9	OsPUB9, OsPUB09,  OsPUB9, PUB9
54896	38943483	Wang Y., Cao L., Liu M., Yan P., Niu F., Dong S., Ma F., Lan D., Zhang X., Hu J., Xin X., Yang J., Luo X.	Alternative splicing of lncRNA LAIR fine-tunes the regulation of neighboring yield-related gene LRK1 expression in rice.	Plant J.	119(4)	1751-1766	2024		
54897	38988632	Li J., Liu H., Lv X., Wang W., Liang X., Chen L., Wang Y., Liu J.	A key ABA biosynthetic gene <i>OsNCED3</i> is a positive regulator in resistance to <i>Nilaparvata lugens</i> in <i>Oryza sativa</i>.	Front Plant Sci	15	1359315	2024	NCED1	OSNCED1, OsNCED-1, OsNCED3, OsNced3, NCED3, OsNCED9, NCED9
54898	38905146	Tang J., Huang X., Sun M., Liang W.	DWARF TILLER1 regulates apical-basal pattern formation and proper orientation of rice embryos.	Plant Physiol.			2024		
54899	38466155	Luo G., Li L., Yang X., Yu Y., Gao L., Mo B., Chen X., Liu L.	MicroRNA1432 regulates rice drought stress tolerance by targeting the CALMODULIN-LIKE2 gene.	Plant Physiol.	195(3)	1954-1968	2024		
54900	38924817	Wang X., Guo N., Zhang Y., Wang G., Shi K.	Cross-protection and cross-feeding between Enterobacter and Comamonas promoting their coexistence and cadmium tolerance in Oryza sativa L.	Microbiol. Res.	286	127806	2024		
54901	38945898	Saha S.R., Islam S.M.S., Itoh K.	Identification of abiotic stress responsive genes: A genome wide analysis of the cytokinin response regulator gene family in rice.	Genes Genet. Syst.			2024	RR4,PRR73,RR9,RR6,PRR95,HST1,RR10	rr4, OsRR4, Rra3, OsRRA3,OsPRR73, Os-PRR73, Prr3, OsPRR3, OsRRA20, OsCCT11, CCT11,OsRR9, Rra1, OsRRA1, OsRR10, RR10,OsRR6, rr6, Rra6, OsRRA6,OsPRR95, Os-PRR95, Prr2, OsPRR2, OsCCT33,RR22, OsRR22, Rrb4, Orr2, OsRR20, OsRRB4, OsHST1,OsRR10, Rra2, OsRRA2, RR2
54902	39057030	Wei Y., Li X., Li D., Su X., Huang Y., Li Q., Liang M., Yang X.	Mapping and Candidate Gene Analysis of the Low-Temperature-Sensitive albino gene <i>OsLTSA8</i> in Rice Seedlings.	Curr Issues Mol Biol	46(7)	6508-6521	2024	LTSA8	OsLTSA8
54903	38923790	Ge Y., Chen G., Cheng X., Li C., Tian Y., Chi W., Li J., Dai Z., Wang C., Duan E., Liu Y., Sun Z., Li J., Wang B., Xu D., Sun X., Zhang H., Zhang W., Wang C., Wan J.	The superior allele LEA12OR in wild rice enhances salt tolerance and yield.	Plant Biotechnol. J.			2024	ZIP1A,SAPK10,LEA12,NCED3	OsbZIP86, bZIP86, OsZIP-1a, ZIP-1a,OsSAPK10, OsSnRK2.10, SnRK2.10,OsLEA12,OSNCED3, OsNCED-3, OsNCED3, OsNCED3a, NCED3a, OsNCED4, NCED4, OsNECD2, OsNCED2b, NCED2b 
54904	38934055	Li X., Tang H., Xu T., Wang P., Ma F., Wei H., Fang Z., Wu X., Wang Y., Xue Y., Zhang B.	N-terminal acetylation orchestrates glycolate-mediated ROS homeostasis to promote rice thermoresponsive growth.	New Phytol.	243(5)	1742-1757	2024		
54905	38423969	Chen D., Shi Y., Zhang P., Xie W., Li S., Xiao J., Yuan M.	Deletion of the sugar importer gene OsSWEET1b accelerates sugar starvation-promoted leaf senescence in rice.	Plant Physiol.	195(3)	2176-2194	2024	WRKY53,SWEET1B	OsWRKY53, WRKY-53,OsSWEET1b, SWEET1b
54906	38933462	Lu Z., Huang W., Ge Q., Liang G., Sun L., Wu J., Ghouri F., Shahid M.Q., Liu X.	Seed development-related genes contribute to high yield heterosis in integrated utilization of elite autotetraploid and neo-tetraploid rice.	Front Plant Sci	15	1421207	2024	FL3,SHRG2	OsFL3,OsSHRG2
54907	38866808	Faustino M., Louren&#xe7;o T., Strobbe S., Cao D., Fonseca A., Rocha I., Van Der Straeten D., Oliveira M.M.	OsTH1 is a key player in thiamin biosynthesis in rice.	Sci Rep	14(1)	13591	2024	TH1	OsTH1, CLES, OsCLES 
54908	38866764	Xiong X., Zeng J., Ning Q., Liu H., Bu Z., Zhang X., Zeng J., Zhuo R., Cui K., Qin Z., Gao Y., Liu X., Zhu Y.	Ferroptosis induction in host rice by endophyte OsiSh-2 is necessary for mutualism and disease resistance in symbiosis.	Nat Commun	15(1)	5012	2024	PR10A,YSL15,IRO2	PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsYSL15, OsYs7,OsIRO2, OsbHLH056, bHLH056, bHLH56, OsbHLH56
54909	38898780	Hu S., Zhou L., Wang J., Mawia A.M., Hui S., Xu B., Jiao G., Sheng Z., Shao G., Wei X., Wang L., Xie L., Zhao F., Tang S., Hu P.	Production of grains with ultra-low heavy metal accumulation by pyramiding novel Alleles of OsNramp5 and OsLsi2 in two-line hybrid rice.	Plant Biotechnol. J.			2024	LSI2,LCT1,LCD,LCD1	Lsi2, SIET1, OsLsi2, OsSIET1,OsLCT1,OsLCD,NRAMP5, OsNRAMP5, OsNramp5, OsLCD1
54910	38928342	Wang C., Liu W.J., Liao X.W., Xu X., Yang S., Zhang X.B., Zhou H., Zhuang C., Gong J., Wu J.L.	The Identification and Gene Mapping of Spotted Leaf Mutant <i>spl43</i> in Rice.	Int J Mol Sci	25(12)		2024	SPL43	TBP1, TBPOs-1, OsTBP1, OsRpt5a, Rpt5a, OsRPT5A, OsSPL43
54911	38887937	Cui Z., Wang X., Dai Y., Li Y., Ban Y., Tian W., Zhang X., Feng X., Zhang X., Jia L., He G., Sang X.	Transcription factor osnf-yc1 regulates grain size.by coordinating the transcriptional activation of OsMADS1 in Oryza sativa L.	Plant J.	119(3)	1465-1480	2024		
54912	38884792	Wen X., Zhong Z., Xu P., Yang Q., Wang Y., Liu L., Wu Z., Wu Y., Zhang Y., Liu Q., Zhou Z., Peng Z., He Y., Cheng S., Cao L., Zhan X., Wu W.	OsCOL5 suppresses heading through modulation of Ghd7 and Ehd2, enhancing rice yield.	Theor. Appl. Genet.	137(7)	162	2024		
54913	38931145	Feng Z., Xu Y., Xie Z., Yang Y., Lu G., Jin Y., Wang M., Liu M., Yang H., Li W., Liang Z.	Overexpression of Abscisic Acid Biosynthesis Gene <i>OsNCED3</i> Enhances Survival Rate and Tolerance to Alkaline Stress in Rice Seedlings.	Plants (Basel)	13(12)		2024	ATP6,SKC1,GPA6,WSI18,SALT,CATB,CATA,SODB,AKT1,SOD4,SOS1,NCED1,APX1	atp6, OsPOX1, prx3, POX1,OsHKT8, HKT8, Os-HKT1;5, OsHKT1;5, HKT1;5, SKC1, qSKC-1(t), OsSKC1,OsNHX5, NHX5, OsGPA6,OsLEA14, OsLEA14a, OsLEA14b, wsi18, pwsi18, OsWsi18, OsLEA14/WSI18,salT*(sal1), SalT1*, sal1, Sal1, SALT, ML, SalT, OsSalT, OsJRL, JRL, Osl43, OsL43, OsMBL1, MBL1, OsJRL01, JRL01, OsJRL1, JRL1,CatB, CAT-B, OsCatB, OsCATB, OsCAT1B, CAT1B, CAT2, OsCAT2,CATA1, Cat A1*, OSCAT-A, Cat2, CatA1, CAT-A, OsCatA, OsCAT, CAT, catA, OSCATA, OsCATc, OsCATA, OsCAT1A, CAT1, OsCAT1, OsCATC, OsCAT2,SodB, Fe-SOD, Fe- SOD, OsFe-SOD, Fe+-SOD, OsFe+-SOD, OsFe-SODa, OsFe-SODb, OsFeSODb, FeSODb, OsFSD1.2, FSD1.2, FeSOD2, OsFSD2, FSD2, OsFSD1, FSD1, ALM1, OsALM1,OsAKT1, Os-AKT1,OsSOD4, OsCSD4, OsCu/Zn-SOD1, Cu/Zn-SOD1, OsCSD2, CSD2, OsSOD4-Cu/Zn, SOD4-Cu/Zn, Cu/ZnSOD3, CuZnSOD3, sodCp, OssodCp, OsCu/ZnSOD3, CuZnSOD2, OsSOD1,OsSOS1, OsNHA1, NHA1, SOS1/NHX7, NHX7, OsNHX7,OSNCED1, OsNCED-1, OsNCED3, OsNced3, NCED3, OsNCED9, NCED9,OsAPX1, APXa, OsAPXa, OsAPx01, OsAPx1, OSAPX1, APx1, cAPX, APX2, cAPXa, OscAPXa
54914	38890561	Zhang F., Liu Y., Liu F., Yang J., Sohail A., Lu C., Xu P.	Genome-wide characterization and analysis of rice DUF247 gene family.	BMC Genomics	25(1)	613	2024	_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_	OsDUF247,OsDUF247,OsDUF247,OsDUF247,OsDUF247,OsDUF247,OsDUF247,OsDUF247,OsDUF247,OsDUF247,OsDUF247,OsDUF247,OsDUF247,OsDUF247,OsDUF247,OsDUF247,OsDUF247, PPR,OsDUF247,OsDUF247,OsDUF247,OsDUF247,OsDUF247,OsDUF247,OsDUF247,OsDUF247,OsDUF247,OsDUF247,OsDUF247,OsDUF247,OsDUF247,OsDUF247,OsDUF247,OsDUF247,OsDUF247,OsDUF247,OsDUF247,OsDUF247,OsDUF247,OsDUF247,OsDUF247,OsDUF247,OsDUF247,OsDUF247,OsDUF247,OsDUF247,OsDUF247,OsDUF247,OsDUF247,OsDUF247,OsDUF247,OsDUF247,OsDUF247,OsDUF247,OsDUF247,OsDUF247,OsDUF247,OsDUF247,OsDUF247,OsDUF247,OsDUF247,OsDUF247,OsDUF247,OsDUF247,OsDUF247,OsDUF247
54915	38903415	Guo X., Wang C., Zhu Q., Dongchen W., Zhang X., Li W., Zhang H., Zhang C., Nant Nyein ZNN., Li M., Chen L., Lee D.	Albino lethal 13, a chloroplast-imported protein required for chloroplast development in rice.	Plant Direct	8(6)	e610	2024	AL13	OsAL13
54916	38640925	Zhu X., Zhao Y., Shi C.M., Xu G., Wang N., Zuo S., Ning Y., Kang H., Liu W., Wang R., Yan S., Wang G.L., Wang X.	Antagonistic control of rice immunity against distinct pathogens by the two transcription modules via salicylic acid and jasmonic acid pathways.	Dev. Cell	59(12)	1609-1622.e4	2024		
54917	38884189	An Z., Yang Z., Zhou Y., Huo S., Zhang S., Wu D., Shu X., Wang Y.	OsJRL negatively regulates rice cold tolerance via interfering phenylalanine metabolism and flavonoid biosynthesis.	Plant Cell Environ.			2024		
54918	38901780	Zhang L.X., Shen C.C., Bai Y.X., Li H.Y., Zhu C.L., Yang C.G., Latif A., Sun Y., Pu C.X.	The receptor kinase OsANX limits precocious flowering and inflorescence over-branching and maintains pollen tube integrity in rice.	Plant Sci.	346	112162	2024		
54919	38892412	Pang Y., Zheng K., Min Q., Wang Y., Xue X., Li W., Zhao H., Qiao F., Han S.	Long Noncoding RNAs in Response to Hyperosmolarity Stress, but Not Salt Stress, Were Mainly Enriched in the Rice Roots.	Int J Mol Sci	25(11)		2024	OSCA1.1	OsOSCA1.1, OsIOSCA1.1, OsDDP1, DDP1, OsDDP1.1, OsDDP1.2, OsDDP1.3, OsDDP1.4
54920	38848769	Prusty A., Mehra P., Sharma S., Malik N., Agarwal P., Parida S.K., Kapoor S., Tyagi A.K.	OsMED14_2, a tail module subunit of Mediator complex, controls rice development and involves jasmonic acid.	Plant Sci.	346	112146	2024		
54921	38856917	Islam M.F., Yamatani H., Takami T., Kusaba M., Sakamoto W.	Characterization of organelle DNA degradation mediated by DPD1 exonuclease in the rice genome-edited line.	Plant Mol. Biol.	114(3)	71	2024	DPD1,DPD1L	OsDPD1,OsDPD1L
54922	38849622	Nie S., Chen L., Zheng M., Dong J., Ma Y., Zhou L., Wang J., Chen J., Hu H., Yang T., Zhao J., Zhang S., Yang W.	GWAS and Transcriptomic Analysis Identify OsRING315 as a New Candidate Gene Controlling amylose content and gel consistency in Rice.	Rice (N Y)	17(1)	38	2024	RING315	OsRING315
54923	38853433	Sun L.Q., Bai Y., Wu J., Fan S.J., Chen S.Y., Zhang Z.Y., Xia J.Q., Wang S.M., Wang Y.P., Qin P., Li S.G., Xu P., Zhao Z., Xiang C.B., Zhang Z.S.	OsNLP3 enhances grain weight and reduces grain chalkiness in rice.	Plant Commun		100999	2024	CEP6,HAP2I,NLP3	OsCEP6, OsCEP6.1, CEP6.1, OsCEP13, CEP13,OsHAP2I, NF-YA, CBF-B, NF-YA8, OsNF-YA8, OsEnS-136, NFYA8,OsNLP3
54924	38993663	Wang Z., Li H., Weng Y.	A neutral invertase controls cell division besides hydrolysis of sucrose for nutrition during germination and seed setting in rice.	iScience	27(7)	110217	2024	NIN8	OsNIN8
54925	38850021	Lim Y.J., Lee Y.H.	Guardian of the rice: Unveiling OsSSP1 for&#xa0;broad-spectrum disease resistance.	Mol Plant	17(7)	996-998	2024		
54926	38828861	Li M.Z., Hu D.W., Liu X.Q., Zhang R., Liu H., Tang Z., Zhao F.J., Huang X.Y.	The OsZIP2 transporter is involved in root-to-shoot translocation and intervascular transfer of cadmium in rice.	Plant Cell Environ.			2024		
54927	38927664	Xiong J., Wen G., Song J., Liu X., Chen Q., Zhang G., Xiao Y., Liu X., Deng H., Tang W., Wang F., Lu X.	Knockout of the Chlorophyll a Oxygenase Gene <i>OsCAO1</i> Reduces Chilling Tolerance in Rice Seedlings.	Genes (Basel)	15(6)		2024	YGL10	CAO, OsCAO, CAO1, OsCAO1, Oslls1, Lls1, DVR, PGL
54928	38824648	Cao C., Guo S., Deng P., Yang S., Xu J., Hu T., Hu Z., Chen D., Zhang H., Navea I.P., Chin J.H., Zhang W., Jing W.	The BEL1-like homeodomain protein OsBLH4 regulates rice plant height, grain number, and heading date by repressing the expression of OsGA2ox1.	Plant J.	119(3)	1369-1385	2024		
54929	38905285	Payuhakrit W., Panpinyaporn P., Khumsri W., Yusakul G., Praphasawat R., Nuengchamnong N., Palipoch S.	Correction: Enhancing chronic wound healing with Thai indigenous rice variety, Kaab Dum: Exploring ER stress and senescence inhibition in HaCaT keratinocyte cell line.	PLoS ONE	19(6)	e0306210	2024		
54930	39000298	Mu C., Cheng W., Fang H., Geng R., Jiang J., Cheng Z., Gao J.	Uncovering <i>PheCLE1</i> and <i>PheCLE10</i> Promoting Root Development Based on Genome-Wide Analysis.	Int J Mol Sci	25(13)		2024		
54931	39065092	Jibril S.M., Wang C., Yang C., Qu H., Yang X., Yang K., Li C., Wang Y.	Multiple Chitin- or Avirulent Strain-Triggered Immunity Induces Microbiome Reassembly in Rice.	Microorganisms	12(7)		2024		
54932	38943592	Qiu L.X., Guan D.X., Liu Y.W., Teng H.H., Li Z.B., Lux A., Kuzyakov Y., Ma L.Q.	Mechanisms of Arbuscular Mycorrhizal Fungi Increasing Silicon Uptake by Rice.	J. Agric. Food Chem.	72(30)	16603-16613	2024		
54933	38940574	Ye H., Hou Q., Lv H., Shi H., Wang D., Chen Y., Xu T., Wang M., He M., Yin J., Lu X., Tang Y., Zhu X., Zou L., Chen X., Li J., Wang B., Wang J.	D53 represses rice blast resistance by directly targeting phenylalanine ammonia lyases.	J Integr Plant Biol			2024		
54934	38991592	Banerjee A., Samanta S., Roychoudhury A.	Melatonin differentially refines the metabolome to improve seed formation during grain developmental stages and enhances yield in two contrasting rice cultivars, grown in arsenic-contaminated soil.	Plant Physiol. Biochem.	214	108849	2024		
54935	38913300	Pak S.H., Ri T.S., Ho T.S., Kim G.S., Kim H.I., Ho U.H.	Stress responsive ZmWRKY53 gene increases cold tolerance in rice.	Transgenic Res.	33(4)	219-227	2024		
54936	38941835	Huang F., Chen L., Zhou Y., Huang J., Wu F., Hu Q., Chang N., Qiu T., Zeng Y., He H., White J.C., Yang W., Fang L.	Exogenous selenium promotes cadmium reduction and selenium enrichment in rice: Evidence, mechanisms, and perspectives.	J. Hazard. Mater.	476	135043	2024		
54937	38917096	Zhao Y., Guo B., Liu Z., Wang X., Xiao G., Bol R.	A meta-analysis of elevated O3 effects on herbaceous plants antioxidant oxidase activity.	PLoS ONE	19(6)	e0305688	2024		
54938	38923382	Chen S., Zhong X., Wang Z., Chen B., Huang X., Xu S., Yang X., Zhou G., Zhang T.	Rice stripe mosaic virus hijacks rice heading-related gene to promote the overwintering of its insect vector.	J Integr Plant Biol			2024		
54939	38943653	Shi H., Yun P., Zhu Y., Wang L., Wang Y., Li P., Zhou H., Cheng S., Liu R., Gao G., Zhang Q., Xiao J., Li Y., Xiong L., You A., He Y.	Natural variation of WBR7 confers rice high yield and quality by modulating sucrose supply in sink organs.	Plant Biotechnol. J.			2024		
54940	38964046	Lin L., Qiu J., Zhang L., Wei C.	Identification and analysis of nine new FLO2 allelic mutants in rice.	J. Plant Physiol.	301	154300	2024		
54941	38941481	Kuniyoshi D., Ishihara M., Yamamori K., Koide Y., Kishima Y.	Tetraploid interspecific hybrids between Asian and African rice species restore fertility depending on killer-protector loci for hybrid sterility.	Genetics			2024		
54942	38507615	Lu Z., Zhu L., Liang G., Li X., Li Q., Li Y., He S., Wu J., Liu X., Zhang J.	MORE FLORET1 controls anther development by negatively regulating key tapetal genes in both diploid and tetraploid rice.	Plant Physiol.	195(3)	1981-1994	2024		
54943	38937300	Huang J., Chen W., Gao L., Qing D., Pan Y., Zhou W., Wu H., Li J., Ma C., Zhu C., Dai G., Deng G.	Rapid improvement of grain appearance in three-line hybrid rice via CRISPR/Cas9 editing of grain size genes.	Theor. Appl. Genet.	137(7)	173	2024		
54944	38924092	Ablazov A., Jamil M., Haider I., Wang J.Y., Melino V., Maghrebi M., Vigani G., Liew K.X., Lin P.Y., Chen G.E., Kuijer H.N.J., Berqdar L., Mazzarella T., Fiorilli V., Lanfranco L., Zheng X., Dai N.C., Lai M.H., Caroline Hsing YI., Tester M., Blilou I., Al-Babili S.	Zaxinone Synthase overexpression modulates rice physiology and metabolism, enhancing nutrient uptake, growth and productivity.	Plant Cell Environ.			2024		
54945	38935573	Kunkowska A.B.	Rooting for survival: OsCDPK5 and OsCDPK13 are crucial for rice acclimation to low oxygen conditions.	Plant Physiol.			2024		
54946	38917922	Ma H., Pei J., Zhuo J., Tang Q., Hou D., Lin X.	The CONSTANS-LIKE gene PeCOL13 regulates flowering through intron-retained alternative splicing in Phyllostachys edulis.	Int. J. Biol. Macromol.	274(Pt 1)	133393	2024		
54947	38940609	Li Z., Ye J., Yuan Q., Zhang M., Wang X., Wang J., Wang T., Qian H., Wei X., Yang Y., Shang L., Feng Y.	BTA2 regulates tiller angle and the shoot gravity response through controlling auxin content and distribution in rice.	J Integr Plant Biol			2024		
54948	38917225	Peng Y., Zhao P., Li Z., Mu N., Tao S., Feng Y., Cheng X., Zhang W.	Genome-wide characterization of single-stranded DNA in rice.	Plant Physiol.			2024		
54949	38917591	Su X., Liu X., Li C., Zhang Y.	24-epibrassinolide as a multidimensional regulator of rice (Oryza sativa) physiological and molecular responses under isoproturon stress.	Ecotoxicol. Environ. Saf.	281	116575	2024		
54950	38882243	Tamanna N., Mojumder A., Azim T., Iqbal M.I., Alam M.N.U., Rahman A., Seraj Z.I.	Comparative metabolite profiling of salt sensitive <i>Oryza sativa</i> and the halophytic wild rice <i>Oryza coarctata</i> under salt stress.	Plant Environ Interact	5(3)	e10155	2024		
54951	38885566	Ji E., Hu S., Lu Q., Zhang M., Jiang M.	Hydrogen peroxide positively regulates ABA signaling via oxidative modification of the C2H2-type zinc finger protein ZFP36 in rice.	Plant Physiol. Biochem.	213	108844	2024		
54952	38879711	Habib M.A., Azam M.G., Haque M.A., Hassan L., Khatun M.S., Nayak S., Abdullah H.M., Ullah R., Ali E.A., Hossain N., Ercisli S., Sarker U.	Climate-smart rice (Oryza sativa L.) genotypes identification using stability analysis, multi-trait selection index, and genotype-environment interaction at different irrigation regimes with adaptation to universal warming.	Sci Rep	14(1)	13836	2024		
54953	38931041	Sikirou M., Shittu A., Moukoumbi Y.D., Arouna A.H., Zokpon C., Bocco R., Najimu A., Ramaiah V.	Field Evaluation of Rice Lines Derived from Suakoko 8 X Bao Thai for Iron Tolerance in the South Saharan African Farming System.	Plants (Basel)	13(12)		2024		
54954	38863272	Wang W., Luo L., Shi H., Song Y., Wang J., Chen C., Shen Z., Rouached H., Zheng L.	The transcription factor OsSPL9 endows rice with copper deficiency resilience.	J. Exp. Bot.			2024		
54955	38872089	Roy R., Hossain A., Sharif M.O., Das M., Sarker T.	Optimizing biochar, vermicompost, and duckweed amendments to mitigate arsenic uptake and accumulation in rice (Oryza sativa L.) cultivated on arsenic-contaminated soil.	BMC Plant Biol.	24(1)	545	2024		
54956	38864853	Zhao Y., Ren L., Zhao T., You H., Miao Y., Liu H., Cao L., Wang B., Shen Y., Li Y., Tang D., Cheng Z.	SCC3 is an axial element essential for homologous chromosome pairing and synapsis.	Elife	13		2024		
54957	38862889	Wang J., Ying S., Long W., Luo L., Qian M., Chen W., Luo L., Xu W., Li Y., Cai Y., Peng X., Xie H.	Integrated transcriptomic and metabolomic analysis provides insight into the pollen development of CMS-D1 rice.	BMC Plant Biol.	24(1)	535	2024		
54958	38921403	Intana W., Suwannarach N., Kumla J., Wonglom P., Sunpapao A.	Plant Growth Promotion and Biological Control against <i>Rhizoctonia solani</i> in Thai Local Rice Variety "Chor Khing" Using <i>Trichoderma breve</i> Z2-03.	J Fungi (Basel)	10(6)		2024		
54959	38865348	Akter A., Hassan L., Nihad S.A.I., Hasan M.J., Robin A.H.K., Khatun M., Tabassum A., Latif M.A.	Pyramiding of bacterial blight resistance genes into promising restorer BRRI31R line through marker-assisted backcross breeding and evaluation of agro-morphological and physiochemical characteristics of developed resistant restorer lines.	PLoS ONE	19(6)	e0301342	2024		
54960	38871167	Biswash M.R., Li K.W., Xu R.K., Uwiringiyimana E., Guan P., Lu H.L., Li J.Y., Jiang J., Hong Z.N., Shi R.Y.	Alteration of soil pH induced by submerging/drainage and application of peanut straw biochar and its impact on Cd(II) availability in an acidic soil to indica-japonica rice varieties.	Environ. Pollut.	356	124361	2024		
54961	38870934	Yu L., Chen Y., Zeng X., Lou Y., Baldwin I.T., Li R.	Brown planthoppers manipulate rice sugar transporters to benefit their own feeding.	Curr. Biol.	34(13)	2990-2996.e4	2024		
54962	38931139	Roy Choudhury D., Maurya A., Singh N.K., Singh G.P., Singh R.	Discovering New QTNs and Candidate Genes Associated with Rice-Grain-Related Traits within a Collection of Northeast Core Set and Rice Landraces.	Plants (Basel)	13(12)		2024		
54963	38897199	Wang W., Huang L., Song Y., Gui S., Cao J., Zhang H., Du M., Chen J., Wang Z., Zhou J., Meng X., Zeng D., Li J., Wang Y.	LAZY4 acts additively with the starch-statolith-dependent gravity-sensing pathway to regulate shoot gravitropism and tiller angle in rice.	Plant Commun		100943	2024		
54964	38888990	Hao Q., Zhu X., Huang Y., Song J., Mou C., Zhang F., Miao R., Ma T., Wang P., Zhu Z., Chen C., Tong Q., Hu C., Chen Y., Dong H., Liu X., Jiang L., Wan J.	E3 ligase DECREASED grain size.1 promotes degradation of a G-protein subunit and positively regulates grain size.in rice.	Plant Physiol.			2024		
54965	38911334	Ye Y., Wang Y., Zou L., Wu X., Zhang F., Chen C., Xiong S., Liang B., Zhu Z., Wu W., Zhang S., Wu J., Hu J.	Identification and candidate analysis of a new brown planthopper resistance locus in an Indian landrace of rice, paedai kalibungga.	Mol. Breed.	44(7)	45	2024		
54966	38928840	Zhao M., Zhai L., Tang Q., Ren J., Zhou S., Wang H., Yun Y., Yang Q., Yan X., Xing F., Qiao W.	Comparative Metabolic Profiling of Different Colored Rice Grains Reveals the Distribution of Major Active Compounds and Key Secondary Metabolites in Green Rice.	Foods	13(12)		2024		
54967	38901511	Chen L., Li X., Li W., Hao X., Wu S., Zhang M., Zheng F., Zhang N.	Structural, physicochemical, and digestive properties of enzymatic debranched rice starch modified by phenolic compounds with varying structures.	Int. J. Biol. Macromol.	274(Pt 1)	133262	2024		
54968	38927322	Shahzad N., Nabi H.G., Qiao L., Li W.	The Molecular Mechanism of Cold-Stress Tolerance: Cold Responsive Genes and Their Mechanisms in Rice (<i>Oryza sativa</i> L.).	Biology (Basel)	13(6)		2024		
54969	38941724	Magar N.D., Barbadikar K.M., Reddy V., Revadi P., Guha P., Gangatire D., Balakrishnan D., Sharma S., Madhav M.S., Sundaram R.M.	Genetic mapping of regions associated with root system architecture in rice using MutMap QTL-Seq.	Plant Physiol. Biochem.	213	108836	2024		
54970	38896902	Dai Z., Yu L., Ma P., Wang Y., An S., Liu M.	Synergistic effects of silicon and goethite co-application in alleviating cadmium stress in rice (Oryza sativa L.): Insights into plant growth and iron plaque formation mechanisms.	Ecotoxicol. Environ. Saf.	281	116570	2024		
54971	38886652	Ashraf U., Anjum S.A., Naseer S., Abbas A., Abrar M., Nawaz M., Luo K.	Gamma amino butyric acid (GABA) application modulated the morpho-physiological and yield traits of fragrant rice under well-watered and drought conditions.	BMC Plant Biol.	24(1)	569	2024		
54972	38931146	Ashraf H., Ghouri F., Liang J., Xia W., Zheng Z., Shahid M.Q., Fu X.	Silicon Dioxide Nanoparticles-Based Amelioration of Cd Toxicity by Regulating Antioxidant Activity and Photosynthetic Parameters in a Line Developed from Wild Rice.	Plants (Basel)	13(12)		2024		
54973	38905727	Guo L., Yang S., Tu Z., Yu F., Qiu C., Huang G., Fang S.	An indole-3-acetic acid inhibitor mitigated mild cadmium stress by suppressing peroxide formation in rice seedling roots.	Plant Physiol. Biochem.	213	108823	2024		
54974	38829839	Oshikawa S., Naoe A., Moriya T., Hasegawa Y., Nakasato M., Ogawa Y., Wakabayashi H., Itoh A., Takeda-Kimura Y., Miyazaki S., Kawaide H., Toyomasu T.	Gibberellin-biosynthetic ent-kaurene synthases in higher plants do not require their non-catalytic domains for the catalysis.	Biochem. J.	481(12)	779-791	2024		
54975	38840036	Tan J., Muhammad S., Zhang L., He H., Bian J.	Functional divergence of FTL9 and FTL10 in flowering control in rice.	BMC Genomics	25(1)	562	2024		
54976	38892403	Ji H., Cheon K.S., Shin Y., Lee C., Son S., Oh H., Yoon D.K., Lee S., Cho M., Jun S., Lee G.S., Baek J., Kim S.L., Ahn I.P., Oh J.H., Yoon H.J., Cha Y.S., Kim K.H.	Map-Based Cloning and Characterization of a Major QTL Gene, <i>FfR1</i>, Which Confers Resistance to Rice Bakanae Disease.	Int J Mol Sci	25(11)		2024		
54977	38839753	Wang H., Ye T., Guo Z., Yao Y., Tu H., Wang P., Zhang Y., Wang Y., Li X., Li B., Xiong H., Lai X., Xiong L.	Author Correction: A double-stranded RNA binding protein enhances drought resistance via protein phase separation in rice.	Nat Commun	15(1)	4776	2024		
54978	38839605	Tian H., Li Y., Guo Y., Qu Y., Zhang X., Zhao X., Chang X., Tian B., Wang G., Yuan X.	Involvement of a rice mutation in storage protein biogenesis in endosperm and its genomic location.	Planta	260(1)	19	2024		
54979	38848768	Teng X., Wang Y., Liu L., Yang H., Wu M., Chen X., Ren Y., Wang Y., Duan E., Dong H., Jiang L., Zhang Y., Zhang W., Chen R., Liu S., Liu X., Tian Y., Chen L., Wang Y., Wan J.	Rice floury endosperm26 encoding a mitochondrial single-stranded DNA-binding protein is essential for RNA-splicing of mitochondrial genes and endosperm development.	Plant Sci.	346	112151	2024		
54980	38837494	Liu X., Su H., Wang F., Ma B., Tao Y., Cao K., Shen Y., Zhao W., Wei Y., Wu F.	Understanding the Role of Low-Dose Polystyrene Microplastic in Copper Toxicity to Rice Seed (Oryza sativa L.).	Environmental Toxicology and Chemistry	43(8)	1870-1879	2024		
54981	38915299	Yeo Y.J., Park A.R., Vuong B.S., Kim J.C.	Biocontrol of <i>Fusarium</i> head blight in rice using <i>Bacillus velezensis</i> JCK-7158.	Front Microbiol	15	1358689	2024		
54982	38856926	Xu N., Qiu Y., Cui X., Fei C., Xu Q.	Enhancing grain shape, thermotolerance, and alkaline tolerance via G&#x3b3; protein manipulation in rice.	Theor. Appl. Genet.	137(7)	154	2024		
54983	38863209	Xu S., Wei X., Yang Q., Hu D., Zhang Y., Yuan X., Kang F., Wu Z., Yan Z., Luo X., Sun Y., Wang S., Feng Y., Xu Q., Zhang M., Yang Y.	A KNOX &#x2161; transcription factor suppresses the NLR immune receptor BRG8-mediated immunity in rice.	Plant Commun		101001	2024		
54984	38891388	Liu Y., Ma J., Li F., Zeng X., Wu Z., Huang Y., Xue Y., Wang Y.	High Concentrations of Se Inhibited the Growth of Rice Seedlings.	Plants (Basel)	13(11)		2024		
54985	38840572	Cui Y., Lin Y., Wei H., Pan Y., He H., Qian H., Yang L., Cao X., Zhang Z., Zeng X., Wang T., He W., Liu X., Shi C., Yuan Q., Yu X., Chen L., Wang F., Zhu Y., Qian Q., Shang L.	Identification of salt tolerance-associated presence-absence variations in the OsMADS56 gene through the integration of DEGs dataset and eQTL analysis.	New Phytol.	243(3)	833-838	2024		
54986	38891356	Shen Y., Li L.	Research Overview and Trends of the Effects of Gibberellins (GAs) on Rice Biological Processes: A Bibliometric Analysis.	Plants (Basel)	13(11)		2024		
54987	38850730	Jia S., Wang C., Sun W., Yan X., Wang W., Xu B., Guo G., Bi C.	OsWRKY12 negatively regulates the drought-stress tolerance and secondary cell wall biosynthesis by targeting different downstream transcription factor genes in rice.	Plant Physiol. Biochem.	212	108794	2024		
54988	38887456	Lee N., Shim J.S., Kang M.K., Kwon M.	Insight from expression profiles of <i>FT</i> orthologs in plants: conserved photoperiodic transcriptional regulatory mechanisms.	Front Plant Sci	15	1397714	2024		
54989	38923565	Wen R., Zhu M., Yu J., Kou L., Ahmad S., Wei X., Jiao G., Hu S., Sheng Z., Zhao F., Tang S., Shao G., Yu H., Hu P.	Photosynthesis regulates tillering bud elongation and nitrogen-use efficiency via sugar-induced NGR5 in rice.	New Phytol.	243(4)	1440-1454	2024		
54990	39031631	Li S., Tan X., He Z., Jiang L., Li Y., Yang L., Hoffmann A.A., Zhao C., Fang J., Ji R.	Transcriptome-wide N6-methyladenosine profiling reveals growth-defense trade-offs in the response of rice to brown planthopper (Nilaparvata lugens) infestation.	Pest Manag. Sci.			2024		
54991	38904257	Yadav D.K., Srivastava G.P., Singh A., Singh M., Yadav N., Tuteja N.	Proteome-wide analysis reveals G protein-coupled receptor-like proteins in rice (<i>Oryza sativa</i>).	Plant Signal Behav	19(1)	2365572	2024		
54992	38875520	Sun H., Yu S., Huang T., Lian L., Jin T., Peng X., Hao G., Wang J., Liu W., Wang H.	Physiological Basis for the Mechanism of Selectivity of Tripyrasulfone between Rice (<i>Oryza sativa</i>) and Barnyard Grass (<i>Echinochloa crus-galli</i>).	J. Agric. Food Chem.	72(25)	14402-14410	2024		
54993	39000188	Cui Y., Song J., Tang L., Xu X., Peng X., Fan H., Wang J.	Genetic Analysis and Fine Mapping of a New Rice Mutant, Leaf Tip Senescence 2.	Int J Mol Sci	25(13)		2024	LTS2	OsLTS2
54994	38501734	Zhong R., Phillips D.R., Clark K.D., Adams E.R., Lee C., Ye Z.H.	Biochemical Characterization of Rice Xylan Biosynthetic Enzymes in Determining Xylan Chain Elongation and Substitutions.	Plant Cell Physiol.	65(6)	1065-1079	2024		
54995	38593031	Wang H., Ye X., Bi Y., Yan Y., Li D., Song F.	Eukaryotic translation elongation factor OseEF1A negatively regulates rice immunity against blast disease.	Plant Physiol.	195(3)	1796-1801	2024		
54996	38915200	Yao Q., Li P., Wang X., Liao S., Wang P., Huang S.	Molecular mechanisms underlying the negative effects of transient heatwaves on crop fertility.	Plant Commun		101009	2024		
54997	38925598	Zhao D., Chen S., Han Y., Liu G., Liu J., Yang Q., Zhang T., Shen J., Fan X., Zhang C., Zhang T., Li Q., Chen C., Liu Q.	A CRISPR/Cas9-mediated mutant library of seed-preferred genes in rice.	Plant Biotechnol. J.			2024		
54998	39000241	Huang Z., Huang P., Chen S., Hu M., Yu H., Guo H., Shahid M.Q., Liu X., Wu J.	Comparative Cytological and Gene Expression Analysis Reveals That a Common Wild Rice Inbred Line Showed Stronger drought tolerance Compared with the Cultivar Rice.	Int J Mol Sci	25(13)		2024		
54999	38913206	Liu J., Ye Q., Jiang W., Liu S., Wu Z., Hu X., Wang X., Zhang Z., Guo D., Chen X., He H., Hu L.	Abnormal Degraded Tapetum&#xa0;1 (ADT1) is required for tapetal cell death and pollen development in rice.	Theor. Appl. Genet.	137(7)	170	2024		
55000	38446735	Kong X., Xiong Y., Song X., Wadey S., Yu S., Rao J., Lale A., Lombardi M., Fusi R., Bhosale R., Huang G.	Ethylene regulates auxin-mediated root gravitropic machinery and controls root angle in cereal crops.	Plant Physiol.	195(3)	1969-1980	2024		
55001	39000075	Miao S., Lu J., Zhang G., Jiang J., Li P., Qian Y., Wang W., Xu J., Zhang F., Zhao X.	Candidate Genes and Favorable Haplotypes Associated with Iron Toxicity Tolerance in Rice.	Int J Mol Sci	25(13)		2024		
55002	38593023	Robil J.M.	A timely death of the tapetum underlies MORE FLORET1 (MOF1) regulation of male fertility in rice.	Plant Physiol.	195(3)	1759-1761	2024		
55003	38938633	Siddika A., Rashid A.A., Khan S.N., Khatun A., Karim M.M., Prasad P.V.V., Hasanuzzaman M.	Harnessing plant growth-promoting rhizobacteria, <i>Bacillus subtilis</i> and <i>B. aryabhattai</i> to combat salt stress in rice: a study on the regulation of antioxidant defense, ion homeostasis, and photosynthetic parameters.	Front Plant Sci	15	1419764	2024		
55004	38933037	Ze M., Ma F., Zhang J., Duan J., Feng D., Shen Y., Chen G., Hu X., Dong M., Qi T., Zou L.	Beneficial effects of <i>Bacillus mojavensis</i> strain MTC-8 on plant growth, immunity and disease resistance against <i>Magnaporthe oryzae</i>.	Front Microbiol	15	1422476	2024		
55005	38860937	Li J., Yang M., He D., Luo Z., Li B., Huang X., Wu F., Xie G., Fan C., Sun W., Yu S., Wang L.	Genome-wide association study of stem structural characteristics that extracted by a high-throughput phenotypic analysis "LabelmeP rice" in rice.	Plant J.	119(4)	2080-2095	2024		
55006	38859561	Rajkumar M.S., Tembhare K., Garg R., Jain M.	Genome-wide mapping of DNase I hypersensitive sites revealed differential chromatin accessibility and regulatory DNA elements under drought stress in rice cultivars.	Plant J.	119(4)	2063-2079	2024		
55007	38842544	Chen H., Tang X., Wang T., Liao W., Wu Z., Wu M., Song Z., Li Y., Luo P.	Calcium polypeptide mitigates Cd toxicity in rice via reducing oxidative stress and regulating pectin modification.	Plant Cell Rep.	43(7)	163	2024		
55008	38880686	Ning M., Li Q., Wang Y., Li Q., Tao Y., Zhang F., Hu F., Huang L.	Alternative splicing drives the functional diversification of a bHLH transcription factor in the control of growth and drought tolerance in rice.	Science Bulletin			2024		
55009	38834032	Wright Z.J., Bartel B.	Hormonal control of underwater germination in rice.	Dev. Cell	59(11)	1361-1362	2024		
55010	38770100	Khuong N.Q., Nhat N.M., Thu L.T.M., Thuc L.V.	Influence of purple non-sulfur bacterial augmentation on soil nutrient dynamics and rice (<i>Oryza sativa</i>) growth in acidic saline-stressed environments.	PeerJ	12	e16943	2024		
55011	38794407	Chan-In P., Jamjod S., Prom-U-Thai C., Rerkasem B., Russell J., Pusadee T.	Application of Silicon Influencing grain yield and Some Grain Quality Features in Thai Fragrant Rice.	Plants (Basel)	13(10)		2024		
55012	38736149	Wang F., Xu Z., Li R., Zhou Z., Hao Z., Wang L., Li M., Zhang D., Song W., Yong H., Han J., Li X., Weng J.	Identification of the coexisting virus-derived siRNA in maize and rice infected by rice black-streaked dwarf virus.	Plant Dis.			2024		
55013	38785840	Tam N.T., Nhan D.K.	Identification of Insertion/Deletion Markers for photoperiod sensitivity in Rice (<i>Oryza sativa</i> L.).	Biology (Basel)	13(5)		2024		
55014	38766512	You J., Ye L., Wang D., Zhang Y., Xiao W., Wei M., Wu R., Liu J., He G., Zhao F., Zhang T.	Mapping and candidate gene analysis of QTLs for grain shape in a rice chromosome segment substitution line Z485 and breeding of SSSLs.	Mol. Breed.	44(6)	39	2024		
55015	38790818	Long C., Du Y., Zeng M., Deng X., Zhang Z., Liu D., Zeng Y.	Relationship between Chalkiness and the Structural and Physicochemical Properties of Rice Starch at Different Nighttime Temperatures during the Early Grain-Filling Stage.	Foods	13(10)		2024		
55016	38747865	Amirova A., Usenbekov B., Berkimbay K., Mynbayeva D., Atabayeva S., Baiseitova G., Meldebekova A., Zhunusbayeva Z., Kenzhebayeva S., Mukhambetzhanov S.	Selection of rice breeding lines for resistance to biotic and abiotic stresses.	Braz J Biol	84	e282495	2024		
55017	38745317	Subramanian V., Dhandayuthapani U.N., Kandasamy S., Sivaprakasam J.V., Balasubramaniam P., Shanmugam M.K., Nagappan S., Elangovan S., Subramani U.K., Palaniyappan K., Vellingiri G., Muthurajan R.	Unravelling the metabolomic diversity of pigmented and non-pigmented traditional rice from Tamil Nadu, India.	BMC Plant Biol.	24(1)	402	2024		
55018	38791550	Teng Y., Wang Y., Zhang Y., Xie Q., Zeng Q., Cai M., Chen T.	Genome-Wide Identification and Expression Analysis of <i>ent-kaurene synthase-like</i> Gene Family Associated with Abiotic Stress in Rice.	Int J Mol Sci	25(10)		2024		
55019	38813207	Mondal S., Pradhan P., Das B., Kumar D., Paramanik B., Yonzone R., Barman R., Saha D., Karforma J., Basak A., Dey P., Seleiman M.F.	Genetic characterization and diversity analysis of indigenous aromatic rice.	Heliyon	10(10)	e31232	2024		
55020	38772107	Sun X., Jiang C., Guo Y., Li C., Zhao W., Nie F., Liu Q.	Suppression of OsSAUR2 gene expression immobilizes soil arsenic bioavailability by modulating root exudation and rhizosphere microbial assembly in rice.	J. Hazard. Mater.	473	134587	2024		
55021	38794481	Chen P., Wang J., Liu Q., Liu J., Mo Q., Sun B., Mao X., Jiang L., Zhang J., Lv S., Yu H., Chen W., Liu W., Li C.	Transcriptome and Metabolome Analysis of Rice Cultivar CBB23 after Inoculation by <i>Xanthomonas oryzae</i> pv. <i>oryzae</i> Strains AH28 and PXO99A.	Plants (Basel)	13(10)		2024		
55022	38751025	Lyu Y., Dong X., Niu S., Cao R., Shao G., Sheng Z., Jiao G., Xie L., Hu S., Tang S., Wei X., Hu P.	An orchestrated ethylene-gibberellin signaling cascade contributes to mesocotyl elongation and emergence of rice direct seeding.	J Integr Plant Biol	66(7)	1427-1439	2024		
55023	38790697	Su R., Luo J., Wang Y., Xiao Y., Liu X., Deng H., Lu X., Chen Q., Chen G., Tang W., Zhang G.	GDSL Lipase gene <i>HTA1</i> Negatively Regulates heat tolerance in Rice Seedlings by Regulating Reactive Oxygen Species Accumulation.	Antioxidants (Basel)	13(5)		2024	GELP49	OsGELP49, HTA1, OsHTA1
55024	38761097	Zhou L., Asad M.A., Guan X., Pan G., Zhang Y., Cheng F.	Rice Myo-inositol-3-phosphate synthase 2 (RINO2) alleviates heat injury-induced impairment in pollen germination and tube growth by modulating Ca2+ signaling and actin filament cytoskeleton.	Plant J.	119(2)	861-878	2024		
55025	38751028	Zeng J., Duan M., Wang Y., Li G., You Y., Shi J., Liu C., Zhang J., Xu J., Zhang S., Zhao J.	Sporophytic control of tapetal development and pollen fertility by a mitogen-activated protein kinase cascade in rice.	J Integr Plant Biol	66(7)	1500-1516	2024		
55026	38748282	Wang Y., Wang M., Yan X., Chen K., Tian F., Yang X., Cao L., Ruan N., Dang Z., Yin X., Huang Y., Li F., Xu Q.	The DEP1 Mutation Improves Stem Lodging Resistance and Biomass Saccharification by Affecting Cell Wall Biosynthesis in Rice.	Rice (N Y)	17(1)	35	2024		
55027	38744795	Deb D.	Is the time of anthesis in rice (Oryza sativa) influenced by photoperiod?	Biol Futur			2024		
55028	38769168	Greenwood J.R., Lacorte-Apostol V., Kroj T., Padilla J., Telebanco-Yanoria MJ., Glaus A.N., Roulin A., Padilla A., Zhou B., Keller B., Krattinger S.G.	Genome-wide association analysis uncovers rice blast resistance alleles of Ptr and Pia.	Commun Biol	7(1)	607	2024		
55029	38753441	Dai S., Chen H., Shi Y., Xiao X., Xu L., Qin C., Zhu Y., Yi K., Lei M., Zeng H.	PHOSPHATE1-mediated phosphate translocation from roots to shoots regulates floral transition in plants.	J. Exp. Bot.			2024		
55030	38816469	Wang S.S., Tsai P.H., Cheng S.F., Chen R.K., Chen K.Y.	Identification of genomic regions controlling spikelet degeneration under FRIZZLE PANICLE (FZP) defect genetic background in rice.	Sci Rep	14(1)	12451	2024		
55031	38825317	Li Z., Chen H., Yuan P., Jiang X., Li Z.M., Wang S.T., Zhou T.G., Zhu H.Y., Bian Q., Zhu X.F., Xuan Y.H.	IDD10-NAC079 transcription factor complex regulates sheath blight resistance by inhibiting ethylene signaling in rice.	Journal of Advanced Research			2024	AMT1;1,CK1,NAC79,NKD,ETR2	OsAMT1;1, OsAMT1:1, OsAMT1, AMT1-1, AMT1, OsAMT1p, OsAMT1-1, Osamt1-1, "OsAMT1,1", OsAMT1.1, AMT1.1, FCO12,OsCK1, CIPK31, OsCIPK31, Os-CIPK3, OsSnRK3.11, SnRK3.11,ONAC079, ONAC79, NAC079, OsNAC079,IDD10, OsIDD10, OsNKD, OsZOS4-11, ZOS4-11,etr2, OsPK1, PK1, ERL1, OsETR2, OsERL1, OS-ETR2, OsERS3
55032	38820200	Sandhu J., Irvin L., Chandaran A.K., Oguro S., Paul P., Dhatt B., Hussain W., Cunningham S.S., Quinones C.O., Lorence A., Adviento-Borbe MA., Staswick P., Morota G., Walia H.	Natural variation in LONELY GUY-Like 1 regulates rice grain weight under warmer night conditions.	Plant Physiol.			2024		
55033	38962072	Rahman J.F., Hoque H., Jubayer A.A., Jewel N.A., Hasan M.N., Chowdhury A.T., Prodhan S.H.	Alfin-like (AL) transcription factor family in <i>Oryza sativa</i> L.: Genome-wide analysis and expression profiling under different stresses.	Biotechnol Rep (Amst)	43	e00845	2024	PHD9,PHD40,AL3,PHD33,PHD22,PHD21,PHD35,PHD1,PHD24	OsPHD9, OsAL2, AL2,OsPHD40, OsAL11, AL11, OsAL9, AL9,OsAL3,OsPHD33, OsAL7.1, AL7.1, OsAL7, AL7,OsPHD22, OsAL5.1, AL5.1, OsAL5, AL5,OsPHD21, OsAL4, AL4,OsPHD35, OsAL7.2, AL7.2, OsAL8, AL8,OsPHD1, OsAL1.2, AL1.2, OsAL1, AL1,OsPHD24, OsAL5.2, AL5.2, OsAL6, AL6
55034	38797007	Liu P., An L., Ma L., Zou L., Du S., Shen Y.	MTP family analysis and association study reveal the role of ZmMTP11 in lead (Pb) accumulation.	Plant Physiol. Biochem.	212	108740	2024		
55035	38773623	Liu X., Gu D., Zhang Y., Jiang Y., Xiao Z., Xu R., Qin R., Li J., Wei P.	Conditional knockdown of OsMLH1 to improve plant prime editing systems without disturbing fertility in rice.	Genome Biol.	25(1)	131	2024		
55036	38855094	Shi Q., Lu W., Wang R., Hu J., Zhu J., Zhang H., Zhou N., Xiong Q.	Lipidomic analysis of grain quality variation in high quality aromatic <i>japonica</i> rice.	Food Chem X	22	101473	2024		
55037	38890853	Yang Y., Zhou L., Feng L., Jiang J., Huang L., Liu Q., Zhang Y., Zhang C., Liu Q.	Deciphering the Role of <i>Waxy</i> Gene Mutations in Enhancing Rice Grain Quality.	Foods	13(11)		2024		
55038	38818938	Servant&#xe9; EK., Halitschke R., Rocha C., Baldwin I.T., Paszkowski U.	Independent regulation of strigolactones and blumenols during arbuscular mycorrhizal symbiosis in rice.	Plant J.	119(3)	1289-1298	2024		
55039	38892141	Qian X., He Y., Zhang L., Li X., Tang W.	Physiological and Proteome Analysis of the Effects of Chitosan Oligosaccharides on salt tolerance of Rice Seedlings.	Int J Mol Sci	25(11)		2024		
55040	38863546	Li X., Wang X., Ma X., Sun W., Chen K., Dou F.	Effectiveness of nanomaterials and their counterparts in improving rice growth and yield under arsenic contamination.	Front Plant Sci	15	1338530	2024		
55041	38781572	Guo S., Hu X., Yu F., Mu L.	Heat Waves Coupled with Nanoparticles Induce Yield and Nutritional Losses in Rice by Regulating Stomatal Closure.	ACS Nano	18(22)	14276-14289	2024		
55042	38835858	Lee S.Y., Lee G., Han J., Ha S.K., Lee C.M., Kang K., Jin M., Suh J.P., Jeung J.U., Mo Y., Lee H.S.	GWAS analysis reveals the genetic basis of blast resistance associated with heading date in rice.	Front Plant Sci	15	1412614	2024		
55043	38814238	Niharika, Salgotra R.K., Sharma M., Sharma R., Ratnasekera D., Al-Ashkar I., Zaboo S.S., Lone J.A., Sharma M., El Sabagh A.	Characterization of chromosomal segment substitution lines developed in the genetic background of rice variety K 343.	Cell. Mol. Biol. (Noisy-le-grand)	70(5)	27-32	2024		
55044	38447119	Wang H., Wang X., Li Y., Cui Y., Yan X., Gao J., Ouyang J., Li S.	Pleiotropic Effects of miR5504 Underlying plant height, grain yield and Quality in Rice.	Plant Cell Physiol.	65(5)	781-789	2024		
55045	38795816	Ullah I., Anwar Y., Siddiqui M.F., Alsulami N., Ullah R.	Phytoremediation of Arsenic (As) in rice plants, mediated by&#xa0;Bacillus subtilis&#xa0;strain IU31 through antioxidant responses and phytohormones synthesis.	Environ. Pollut.	355	124207	2024		
55046	38803114	Wei Y., Zhang H., Fan J., Cai Q., Zhang Z., Wang J., Zhang M., Yan F., Jiang J., Xie H., Luo X., Wei L., Lin Y., He W., Qu M., Zhang X., Zhu Y., Xie H., Zhang J.	Multiplex-genome-editing based rapid directional improvement of complex traits in rice.	Plant Biotechnol. J.	22(9)	2624-2628	2024		
55047	38478430	Liu L., Zhao L., Liu Y., Zhu Y., Chen S., Yang L., Li X., Chen W., Xu Z., Xu P., Wang H., Yu D.	Transcription factor OsWRKY72 controls rice leaf angle by regulating lazy1-mediated shoot gravitropism.	Plant Physiol.	195(2)	1586-1600	2024		
55048	38780864	Zhang X., Wang Y., Liu M., Yan P., Niu F., Ma F., Hu J., He S., Cui J., Yuan X., Yang J., Cao L., Luo X.	OsEXPA7 Encoding an Expansin Affects grain size.and Quality Traits in Rice (Oryza sativa L.).	Rice (N Y)	17(1)	36	2024		
55049	38868093	Sharma N., Yadav G., Tyagi J., Kumar A., Koul M., Joshi N.C., Hashem A., Abd Allah EF., Mishra A.	Synergistic impact of <i>Serendipita indica</i> and <i>Zhihengliuella</i> sp. ISTPL4 on the mitigation of arsenic stress in rice.	Front Microbiol	15	1374303	2024		
55050	38808567	Zhang J., Aroca A., Herv&#xe1;s M., Navarro J.A., Moreno I., Xie Y., Romero L.C., Gotor C.	Analysis of sulfide signaling in rice highlights specific drought responses.	J. Exp. Bot.			2024		
55051	38802342	Wang J.D., Wang J., Huang L.C., Kan L.J., Wang C.X., Xiong M., Zhou P., Zhou L.H., Chen C., Zhao D.S., Fan X.L., Zhang C.Q., Zhou Y., Zhang L., Liu Q.Q., Li Q.F.	ABA-mediated regulation of rice grain quality and seed dormancy via the NF-YB1-SLRL2-bHLH144 Module.	Nat Commun	15(1)	4493	2024	HAP3K,HAP5L,SLRL2,BHLH144,MFT2,WX1	OsHAP3K/OsNF-YB1, OsHAP3K, OsNF-YB1, NF-YB1, nf-yb1, OsLEC1, OsNF-YB-1, NFYB1, OsEnS-41,OsEnS-133, OsHAP5L, OsNF-YC12, NF-YC12, OsNF-YC11, NF-YC11, NFYC11,OsSLRL2, OsGRAS-30, OsGRAS30, GRAS-30, GRAS30,OsbHLH144, OsEnS-65, bHLH144, EnS-65, OsZOU-1, OsZOU1, ZOU-1, ZOU1,OsMFT2, OsMFT,wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx
55052	38804905	Ballichatla S., C G G., Barbadikar K.M., Hake A.A., Potupureddi G., Guha P.K., Phule A.S., Magar N.D., Balija V., Awalellu K., Kokku P., Golla S., Raman Meenakshi S., Ayyangari Phani P., Gouri Shankar L., P S., Lella Venkata SR., K Patel H., Sonti R.V., Maganti S.M.	Impairment in a member of AP2/ERF and F-box family protein enhances complete panicle exsertion, an economically important trait in rice.	J. Exp. Bot.			2024		
55053	38717687	Wang K., Li J., Fan Y., Yang J.	Temperature Effect on Rhizome Development in Perennial rice.	Rice (N Y)	17(1)	32	2024		
55054	38724935	Ndreca B., Huttly A., Bibi S., Bayon C., Lund G., Ham J., Alarc&#xf3;n-Reverte R., Addy J., Tarkowsk&#xe1; D., Pearce S., Hedden P., Thomas S.G., Phillips A.L.	Stacked mutations in wheat homologues of rice SEMI-DWARF1 confer a novel semi-dwarf phenotype.	BMC Plant Biol.	24(1)	384	2024		
55055	38726377	Zhang N., Dong X., Jain R., Ruan D., de Araujo Junior AT., Li Y., Lipzen A., Martin J., Barry K., Ronald P.C.	XA21-mediated resistance to <i>Xanthomonas oryzae</i> pv. <i>oryzae</i> is dose dependent.	PeerJ	12	e17323	2024		
55056	38785808	Pagano M., Del Prete S.	Symphonies of Growth: Unveiling the Impact of Sound Waves on Plant Physiology and Productivity.	Biology (Basel)	13(5)		2024		
55057	38739961	Yang H., Zhang Y., Lyu S., Liu Y., Jian S., Deng S.	MpNAC1, a transcription factor from the mangrove associate Millettia pinnata, confers salt and drought stress tolerance in transgenic Arabidopsis and rice.	Plant Physiol. Biochem.	211	108721	2024		
55058	38661024	Xu G., Li C., Gui W., Xu M., Lu J., Qian M., Zhang Y., Yang G.	Colonization of Piriformospora indica enhances rice resistance against the brown planthopper Nilaparvata lugens.	Pest Manag. Sci.	80(9)	4386-4398	2024		
55059	38676622	Zhang L., Huang Y., Shi Y., Si H., Luo H., Chen S., Wang Z., He H., Liao S.	Synthesis, antifungal activity and action mechanism of novel citral amide derivatives against Rhizoctonia solani.	Pest Manag. Sci.	80(9)	4482-4494	2024		
55060	38724681	Liu Y., Zhou W., He M., Sui J., Tian X., Guan Q., Yu X., Li K., Bu Q., Li X.	Comprehensive analysis of stress-activated protein kinase genes (OsSAPKs) in rice flowering time.	Planta	259(6)	149	2024		
55061	38715250	Chen X., Chen Z., Fiorentino A., Kuess M., Tharayil N., Kumar R., Leonard E., Noorai R., Hu Q., Luo H.	MicroRNA169 integrates multiple factors to modulate plant growth and abiotic stress responses.	Plant Biotechnol. J.	22(9)	2541-2557	2024		
55062	38794377	Chen J., Wang S., Jiang S., Gan T., Luo X., Shi R., Xuan Y., Xiao G., Chen H.	Overexpression of <i>Calcineurin</i> B-like Interacting Protein Kinase 31 Promotes Lodging and Sheath Blight Resistance in Rice.	Plants (Basel)	13(10)		2024		
55063	38709339	Ramprasad E., Rani C.V.D., Neeraja C.N., Padmavathi G., Jagadeeshwar R., Anjali C., Thakur P., Yamini K.N., Laha G.S., Prasad M.S., Alhelaify S.S., Aharthy O.M., Sayed S.M., Mushtaq M.	Understanding the nature of blast resistance in combined bacterial leaf blight and blast gene pyramided lines of rice variety tellahamsa.	Mol. Biol. Rep.	51(1)	619	2024		
55064	38736650	Hong Z., Liu Y., He M., Zhou W., Sui J., Tian X., Guan Q., Yu X., Li K., Bu Q., Li X.	A novel functional allele of <i>Ehd3</i> controls flowering time in rice.	Mol. Breed.	44(5)	35	2024		
55065	38725245	Chi Y., Zhang H., Chen S., Cheng Y., Zhang X., Jia D., Chen Q., Chen H., Wei T.	Leafhopper salivary carboxylesterase suppresses JA-Ile synthesis to facilitate initial arbovirus transmission in rice phloem.	Plant Commun		100939	2024		
55066	38794371	Huang Q., Zhang Y., Tan Y., Kong H., Cao Y., Wang J., Yin G., Guo A.	<i>Bt</i>-Modified Transgenic Rice May Shift the Composition and Diversity of Rhizosphere Microbiota.	Plants (Basel)	13(10)		2024		
55067	38815128	Riaz A., Thomas J., Ali H.H., Zaheer M.S., Ahmad N., Pereira A.	High night temperature stress on rice (<i>Oryza sativa</i>) - insights from phenomics to physiology. A review.	Funct. Plant Biol.	51		2024		
55068	38769068	Regon P., Saha B., Jyoti S.Y., Gupta D., Kundu B., Tanti B., Panda S.K.	Transcriptional networks revealed late embryogenesis abundant genes regulating drought mitigation in aromatic Keteki Joha rice.	Physiol Plant	176(3)	e14348	2024		
55069	38756474	Guo B., Chen F., Liu G., Li W., Li W., Zhuang J., Zhang X., Wang L., Lei B., Hu C., Liu Y.	Effects and mechanisms of proanthocyanidins-derived carbon dots on alleviating salt stress in rice by muti-omics analysis.	Food Chem X	22	101422	2024		
55070	38797869	Yang C., Lu J., Xiong Z., Wang B., Ren T., Cong R., Lu Z., Li X.	Potassium deficiency enhances imbalances in rice water relations under water deficit by decreasing leaf hydraulic conductance.	Physiol Plant	176(3)	e14360	2024		
55071	38769079	Nguyen V.N.T., Usman B., Kim E.J., Shim S.H., Jeon J.S., Jung K.H.	An ATP-binding cassette transporter, OsABCB24, is involved in female gametophyte development and early seed growth in rice.	Physiol Plant	176(3)	e14354	2024		
55072	38828612	Ahmad S., Tabassum J., Sheng Z., Lv Y., Chen W., Zeb A., Dong N., Ali U., Shao G., Wei X., Hu S., Tang S.	Loss-of-function of PGL10 impairs photosynthesis and tolerance to high-temperature stress in rice.	Physiol Plant	176(3)	e14369	2024		
55073	38643538	Yang M., Zhou B., Song Z., Tan Z., Liu R., Luo Y., Guo Z., Lu S.	A calmodulin-like protein PvCML9 negatively regulates salt tolerance.	Plant Physiol. Biochem.	210	108642	2024		
55074	38663266	Santhoshkumar R., Hima Parvathy A., Soniya E.V.	Biocompatible silver nanoparticles as nanopriming mediators for improved rice germination and root growth: A transcriptomic perspective.	Plant Physiol. Biochem.	210	108645	2024		
55075	38794395	Hu C., Li X., Zhang M., Jing C., Hai M., Shen J., Xu Q., Dang X., Shi Y., Liu E., Jiang J.	Identifying the Quantitative Trait Locus and Candidate Genes of Traits Related to Milling Quality in Rice via a Genome-Wide Association Study.	Plants (Basel)	13(10)		2024		
55076	38760728	Zhang Y., Wang N., He C., Gao Z., Chen G.	Comparative transcriptome analysis reveals major genes, transcription factors and biosynthetic pathways associated with leaf senescence in rice under different nitrogen application.	BMC Plant Biol.	24(1)	419	2024		
55077	38754691	Xu F., Chen J., Wang W., Zhu L.	Polybrominated diphenyl ethers (PBDEs) decreased the protein quality of rice grains by disturbing amino acid metabolism.	Environ. Pollut.	353	124162	2024		
55078	38762897	Ye T., Wang H., An C., Tu H., Zhang L., Hu D., Xiong H., Xiong L.	An expanded cysteine-rich receptor-like kinase gene cluster functionally differentiates in drought, cold, heat, and pathogen stress responses in rice.	Plant Biotechnol. J.			2024		
55079	38761493	Wu Y., Hu L., Wu L., Yang Y., Li Y.	Real-time monitoring abscisic acid release from single rice protoplast by amperometry at microelectrodes modified with abscisic acid receptor PYL2.	Bioelectrochemistry	159	108733	2024		
55080	38761404	Shiono K., Ejiri M., Sawazaki Y., Egishi Y., Tsunoda T.	Low nitrate under waterlogging triggers exodermal suberization to form a barrier to radial oxygen loss in rice roots.	Plant Physiol.			2024		
55081	38791268	Komatsu S., Egishi M., Ohno T.	The Changes of Amino-Acid Metabolism between Wheat and Rice during Early Growth under Flooding Stress.	Int J Mol Sci	25(10)		2024		
55082	38891020	Zhang Q., He D., Zhang J., He H., Guan G., Xu T., Li W., He Y., Zhang Z.	RIP5 Interacts with REL1 and Negatively Regulates drought tolerance in Rice.	Cells	13(11)		2024	AAO3,AAO1,ORAP1,AAO2,REL1,AAO5,AAO6	OsAAO3,OsAAO1,OsORAP1, OzT9, AO, OsAAO4, AAO4,OsAAO2, L-APX, RIP5, OsRIP5,OsREL1,OsAAO5,OsAAO6
55083	38810581	Imran M., Junaid M., Shafiq S., Liu S., Chen X., Wang J., Tang X.	Multiomics analysis reveals a substantial decrease in nanoplastics uptake and associated impacts by nano zinc oxide in fragrant rice (Oryza sativa&#xa0;L.).	J. Hazard. Mater.	474	134640	2024		
55084	38890846	Guo Z., Cai L., Liu C., Zhang Y., Wang L., Liu H., Feng Y., Pan G., Ma W.	Comparative Metabolome Profiling for Revealing the Effects of Different Cooking Methods on Glutinous Rice Longjing57 (<i>Oryza sativa</i> L. var. <i>Glutinosa</i>).	Foods	13(11)		2024		
55085	38775146	Miwa T., Ishikawa O., Takeda-Kimura Y., Toyomasu T.	Essential residues in diterpene synthases for biosynthesis of oryzalexins A-F in rice phytoalexin.	FEBS J.	291(16)	3653-3664	2024		
55086	38789817	Fan M., Gao S., Yang Y., Yang S., Wang H., Shi L.	Genome-wide identification and expression analysis of the universal stress protein (USP) gene family in Arabidopsis thaliana, Zea mays, and Oryza sativa.	Genetica	152(2-3)	119-132	2024		
55087	38802756	Dang K., Mu J., Tian H., Gao D., Zhou H., Guo L., Shao X., Geng Y., Zhang Q.	Zinc regulation of chlorophyll fluorescence and carbohydrate metabolism in saline-sodic stressed rice seedlings.	BMC Plant Biol.	24(1)	464	2024		
55088	38892132	Gu C., Zhang Y., Wang M., Lin Y., Zeng B., Zheng X., Song Y., Zeng R.	Metabolomic Profiling Reveals the Anti-Herbivore Mechanisms of Rice (<i>Oryza sativa</i>).	Int J Mol Sci	25(11)		2024		
55089	38816417	Li Y., Wang Q., Jia H., Ishikawa K., Kosami K.I., Ueba T., Tsujimoto A., Yamanaka M., Yabumoto Y., Miki D., Sasaki E., Fukao Y., Fujiwara M., Kaneko-Kawano T., Tan L., Kojima C., Wing R.A., Sebastian A., Nishimura H., Fukada F., Niu Q., Shimizu M., Yoshida K., Terauchi R., Shimamoto K., Kawano Y.	An NLR paralog Pit2 generated from tandem duplication of Pit1 fine-tunes Pit1 localization and function.	Nat Commun	15(1)	4610	2024	PIT,PIT2	Pit, Pit(K59), Pit(Npb), Pi-t, PitNpb, PitK59, Pit1, OsPit1,Pit2, OsPit2
55090	38776277	Thapa M., Liu L., Barkla B.J., Kretzschmar T., Rogiers S.Y., Rose T.J.	Accumulation patterns of anthocyanin and &#x3b3;-oryzanol during black rice grain development.	PLoS ONE	19(5)	e0302745	2024		
55091	38807445	Tang X., Eid A., Zhang R., Cheng Y., Liu A., Chen Y., Chen P., Zhang Y., Qi Y.	Genome editing in rice and tomato with a small Un1Cas12f1 nuclease.	Plant Genome	17(2)	e20465	2024		
55092	38771359	Husakova M., Orlandi V.T., Bolognese F., Branska B., Patakova P.	Screening Antibacterial Photodynamic Effect of Monascus Red Yeast Rice (Hong-Qu) and Mycelium Extracts.	Curr. Microbiol.	81(7)	183	2024		
55093	38811581	Huang J., Zhang Y., Li Y., Xing M., Lei C., Wang S., Nie Y., Wang Y., Zhao M., Han Z., Sun X., Zhou H., Wang Y., Zheng X., Xiao X., Fan W., Liu Z., Guo W., Zhang L., Cheng Y., Qian Q., He H., Yang Q., Qiao W.	Haplotype-resolved gapless genome and chromosome segment substitution lines facilitate gene identification in wild rice.	Nat Commun	15(1)	4573	2024		
55094	38727876	Sandhu N., Singh J., Ankush A.P., Augustine G., Raigar O.P., Verma V.K., Pruthi G., Kumar A.	Development of Novel KASP Markers for Improved Germination in Deep-Sown Direct Seeded Rice.	Rice (N Y)	17(1)	33	2024		
55095	38713254	Gokulan C.G., Bangale U., Balija V., Ballichatla S., Potupureddi G., Rao D., Varma P., Magar N., Jallipalli K., Manthri S., Padmakumari A.P., Laha G.S., Rao L.V.S., Barbadikar K.M., Raman M.S., Patel H.K., Maganti S.M., Sonti R.V.	Multiomics-assisted characterization of rice-Yellow Stem Borer interaction provides genomic and mechanistic insights into stem borer resistance in rice.	Theor. Appl. Genet.	137(6)	122	2024		
55096	38791109	Sakashita Y., Kurashima H., Fukuda M., Hirano H., Lamsal S., Katayama N., Fukao T.	Possible Roles of Carbohydrate Management and Cytokinin in the Process of Defoliation-Regrowth Cycles in Rice.	Int J Mol Sci	25(10)		2024		
55097	38722963	Oliveira-Garcia E., Hamilton A.J.	A pharmacological approach to investigating effector translocation in rice-<i>Magnaporthe</i> oryzae interactions.	Plant Signal Behav	19(1)	2350869	2024		
55098	38709298	Zeng H., He K., He Q., Xu L., Zhang W., Lu X., Tang Y., Zhu X., Yin J., He M., Chen X., Li W.	Exogenous Indole-3-Acetic Acid Suppresses Rice Infection of <i>Magnaporthe oryzae</i> by Affecting Plant Resistance and Fungal Growth.	Phytopathology	114(5)	1050-1056	2024		
55099	38593487	Khepar V., Sidhu A., Mankoo R.K., Manchanda P., Sharma A.B.	Nanobiostimulant action of trigolic formulated zinc sulfide nanoparticles (ZnS-T NPs) on rice seeds by triggering antioxidant defense network and plant growth specific transcription factors.	Plant Physiol. Biochem.	210	108605	2024		
55100	38575927	Aloryi K.D., Okpala N.E., Guo H., Karikari B., Amo A., Bello S.F., Saini D.K., Akaba S., Tian X.	Integrated meta-analysis and transcriptomics pinpoint genomic loci and novel candidate genes associated with submergence tolerance in rice.	BMC Genomics	25(1)	338	2024		
55101	38565780	Ly L.K., Ho T.M., Bui T.P., Nguyen L.T., Phan Q., Le N.T., Khuat L.T.M., Le L.H., Chu H.H., Pham N.B., Do P.T.	CRISPR/Cas9 targeted mutations of OsDSG1 gene enhanced salt tolerance in rice.	Funct. Integr. Genomics	24(2)	70	2024		
55102	38570642	Wang X., Shen X., Qu Y., Zhang H., Wang C., Yang F., Shen H.	Structural insights into ion selectivity and transport mechanisms of Oryza sativa HKT2;1 and HKT2;2/1 transporters.	Nat Plants	10(4)	633-644	2024		
55103	38566207	Li X., Zhu B., Lu Y., Zhao F., Liu Q., Wang J., Ye M., Chen S., Nie J., Xiong L., Zhao Y., Wu C., Zhou D.X.	DNA methylation remodeling and the functional implication during male gametogenesis in rice.	Genome Biol.	25(1)	84	2024	JMJ706,CMT1,CMT2,JMJ707	OsJMJ706,OsCMT1, OsCMT3b, CMT3b,OsCMT2, OsCMT3a, CMT3a,OsJMJ707, DLN65, OsDLN65
55104	38737323	Das D., Chowdhury N., Sharma M., Suma R., Saikia B., Velmurugan N., Chikkaputtaiah C.	Screening for brown-spot disease and drought stress response and identification of dual-stress responsive genes in rice cultivars of Northeast India.	Physiol Mol Biol Plants	30(4)	647-663	2024		
55105	38600023	Yamaji N., Yoshioka Y., Huang S., Miyaji T., Sasaki A., Ma J.F.	An oligo peptide transporter family member, OsOPT7, mediates xylem unloading of Fe for its preferential distribution in rice.	New Phytol.	242(6)	2620-2634	2024		
55106	38611565	Chen T., Niu Y., Yang C., Liang Y., Xu J.	Screening of Rice (<i>Oryza sativa</i> L.) Genotypes for Salinity Tolerance and Dissecting Determinants of Tolerance Mechanism.	Plants (Basel)	13(7)		2024		
55107	38561340	Azad M., Tohidfar M., Ghanbari Moheb Seraj R., Mehralian M., Esmaeilzadeh-Salestani K.	Identification of responsive genes to multiple abiotic stresses in rice (Oryza sativa): a meta-analysis of transcriptomics data.	Sci Rep	14(1)	5463	2024		
55108	38600265	Huang L.Y., Liu N.N., Chen W.F., Ai X., Li H.H., Zhang Z.L., Hou X.M., Foss&#xe9; P., Mauffret O., Lei D.S., Rety S., Xi X.G.	The catalytic triad of rice NARROW LEAF1 involves H234.	Nat Plants	10(5)	743-748	2024		
55109	38579719	Wang Y., Jin G., Song S., Jin Y., Wang X., Yang S., Shen X., Gan Y., Wang Y., Li R., Liu J.X., Hu J., Pan R.	A peroxisomal cinnamate:CoA ligase-dependent phytohormone metabolic cascade in submerged rice germination.	Dev. Cell	59(11)	1363-1378.e4	2024	CNL2,CNL1	OsCNL2,OsCNL1
55110	38583205	Guo R., Zhang Q., Chen C.Z., Sun J.Y., Tu C.Y., He M.X., Shen R.F., Huang J., Zhu X.F.	A novel aldo-keto reductase gene, OsAKR1, from rice confers higher tolerance to cadmium stress in rice by an in vivo reactive aldehyde detoxification.	J. Hazard. Mater.	470	134212	2024		
55111	38558078	Lou T., Lv S., Wang J., Wang D., Lin K., Zhang X., Zhang B., Guo Z., Yi Z., Li Y.	Cell size and xylem differentiation regulating genes from Salicornia europaea contribute to plant salt tolerance.	Plant Cell Environ.	47(7)	2640-2659	2024		
55112	38592643	Grondin A., Natividad M.A., Ogata T., Jan A., Gaudin A.C.M., Trijatmiko K.R., Liwanag E., Maruyama K., Fujita Y., Yamaguchi-Shinozaki K., Nakashima K., Slamet-Loedin IH., Henry A.	A Case Study from the Overexpression of OsTZF5, Encoding a CCCH Tandem Zinc Finger Protein, in Rice Plants Across Nineteen Yield Trials.	Rice (N Y)	17(1)	25	2024		
55113	38665585	Han D.H., Kim H.J., Kim S.H., Kim I.D., Adhikari A., Kim J.H.	Effect of illite pretreatment on germinated Brown rice with Special Reference to amino acids, antioxidants, texture, and mineral elements.	Heliyon	10(8)	e28843	2024		
55114	38673733	Zhou Y., Yang H., Liu E., Liu R., Alam M., Gao H., Gao G., Zhang Q., Li Y., Xiong L., He Y.	Fine Mapping of Five grain size QTLs Which Affect grain yield and Quality in Rice.	Int J Mol Sci	25(8)		2024		
55115	38569936	Torres-Rodriguez MD., Lee S.G., Roy Choudhury S., Paul R., Selvam B., Shukla D., Jez J.M., Pandey S.	Structure-function analysis of plant G-protein regulatory mechanisms identifies key G&#x3b1;-RGS protein interactions.	J. Biol. Chem.	300(5)	107252	2024		
55116	38658147	Liu Y., Yuan X., Yang H., Huang J., Zhu Z., Lu D., Shen S., Yang Y., Rao Y.	[Genetic dissection of rice resistance to bacterial blight].	Sheng Wu Gong Cheng Xue Bao	40(4)	1040-1049	2024		
55117	38670030	Sharma S., Raviteja D.H., Kumar T., Bindraban P.S., Pandey R.	Nutrient remobilization and C:N:P stoichiometry in response to elevated CO2 and low phosphorus availability in rice cultivars introgressed with and without Pup1.	Plant Physiol. Biochem.	210	108657	2024		
55118	38666963	Song J., Tang L., Fan H., Xu X., Peng X., Cui Y., Wang J.	Enhancing Yield and Improving Grain Quality in Japonica Rice: Targeted Ehd1 Editing via CRISPR-Cas9 in Low-Latitude Adaptation.	Curr Issues Mol Biol	46(4)	3741-3751	2024		
55119	38243876	Fang Y., Chen J.	A ying and yang balance: transcription factors OsNAC2 and OsEREBP1 synergistically regulate plant immunity.	Plant Physiol.	195(1)	271-272	2024		
55120	38732433	Huang J., Zhou Z., Wang Y., Yang J., Wang X., Tang Y., Xu R., Li Y., Wu L.	<i>SMS2</i>, a Novel Allele of <i>OsINV3</i>, Regulates grain size.in Rice.	Plants (Basel)	13(9)		2024	SMS2	INV3, OSINV3, OsINV3, OsVIN2, VIN2, VINV, OsSMS2
55121	38668956	Puga M.I., Poza-Carri&#xf3;n C., Martinez-Hevia I., Perez-Liens L., Paz-Ares J.	Recent advances in research on phosphate starvation signaling in plants.	J. Plant Res.	137(3)	315-330	2024		
55122	38654190	Gao W., Jiang Y., Yang X., Li T., Zhang L., Yan S., Cao J., Lu J., Ma C., Chang C., Zhang H.	Functional analysis of a wheat class III peroxidase gene, TaPer12-3A, in seed dormancy and germination.	BMC Plant Biol.	24(1)	318	2024		
55123	38647736	Ju Y., Jia Y., Cheng B., Wang D., Gu D., Jing W., Zhang H., Chen X., Li G.	NRT1.1B mediates rice plant growth and soil microbial diversity under different nitrogen conditions.	AMB Express	14(1)	39	2024		
55124	38674565	Li N., Xu Y., Lu Y.	A Regulatory Mechanism on Pathways: Modulating Roles of MYC2 and BBX21 in the Flavonoid Network.	Plants (Basel)	13(8)		2024	CHS,RD,ANS,F3H1,BHLH9,CHI3,F3'H,C	CHS*, Oschs, chs, chas, OsCHS, OsCHS1, CHS1, OsPKS26, PKS26, OsCHS24, CHS24, OsCHS27, CHS27,Rd, DFR, OsDFR, OS-DFR, OsDFR1, DFR1, DFR-1,ANS, OsANS1, ANS1, LDOX, LDOX1, OsLDOX, OsLDOX1,OsF3H-1, F3H-1, OsF3H1, OsF3H, F3H, OsF3H3, F3H3,OsbHLH009, bHLH009, OsMYC2, MYC2,gh1, GH1, OsGH1, OsCHI, Cfi, CHI, OsCHI3,OsF3'H, OsCYP75B3, CYP75B3, OsF3'H10, F3'H10, OsCYP71P3, CYP71P3,C, Cp, OsC1, Os-C1, C1, OsMyb6, Myb6, OsPL6, PL6, OsGL1E, GL1E, Os2R_MYB63, 2R_MYB63, OsC1PLSr, C1PLSr
55125	38649523	Ghazy M.I., El-Naem SA., Hefeina A.G., Sallam A., Eltaher S.	Genome-Wide Association Study of Rice Diversity Panel Reveals New QTLs for Tolerance to Water Deficit Under the Egyptian Conditions.	Rice (N Y)	17(1)	29	2024		
55126	38668372	Xue Y., Zhou C., Feng N., Zheng D., Shen X., Rao G., Huang Y., Cai W., Liu Y., Zhang R.	Transcriptomic and Lipidomic Analysis Reveals Complex Regulation Mechanisms Underlying Rice Roots' Response to Salt Stress.	Metabolites	14(4)		2024		
55127	38726299	Nian Y., Su X., Yue H., Zhu Y., Li J., Wang W., Sheng Y., Ma Q., Liu J., Li X.	Estimation of the rice aboveground biomass based on the first derivative spectrum and Boruta algorithm.	Front Plant Sci	15	1396183	2024		
55128	38653755	Jiang L., Zhang X., Zhao Y., Zhu H., Fu Q., Lu X., Huang W., Yang X., Zhou X., Wu L., Yang A., He X., Dong M., Peng Z., Yang J., Guo L., Wen J., Huang H., Xie Y., Zhu S., Li C., He X., Zhu Y., Friml J., Du Y.	Phytoalexin sakuranetin attenuates endocytosis and enhances resistance to rice blast.	Nat Commun	15(1)	3437	2024		
55129	38732428	Song L., Yang T., Wang X., Ye W., Lu G.	<i>Magnaporthe oryzae</i> Effector AvrPik-D Targets Rice Rubisco Small Subunit OsRBCS4 to Suppress Immunity.	Plants (Basel)	13(9)		2024		
55130	38671283	Attia H., Alamer K.H.	Supplementation of Jasmonic acid Mitigates the Damaging Effects of Arsenic Stress on Growth, Photosynthesis and Nitrogen Metabolism in Rice.	Rice (N Y)	17(1)	31	2024		
55131	38732393	Wang J., Han M., Huang Y., Zhao J., Liu C., Ma Y.	Flooding Tolerance of Rice: Regulatory Pathways and Adaptive Mechanisms.	Plants (Basel)	13(9)		2024		
55132	38731985	Zhang L., Wang X., Zu Y., He Y., Li Z., Li Y.	Effects of UV-B Radiation Exposure on Transgenerational Plasticity in Grain Morphology and Proanthocyanidin Content in Yuanyang Red Rice.	Int J Mol Sci	25(9)		2024		
55133	38732430	Du Y., Zhao H., Feng N., Zheng D., Khan A., Zhou H., Deng P., Wang Y., Lu X., Jiang W.	Alginate Oligosaccharides Alleviate Salt Stress in Rice Seedlings by Regulating Cell Wall Metabolism to Maintain Cell Wall Structure and Improve Lodging Resistance.	Plants (Basel)	13(9)		2024		
55134	38670177	Mo X., Zhu H., Yi C., Deng Y., Yuan J.	Rheological properties of indica rice determined by starch structure related enzymatic activities during after-ripening.	Int. J. Biol. Macromol.	269(Pt 1)	131738	2024		
55135	38658570	Ahmed M.S., Majeed A., Attia K.A., Javaid R.A., Siddique F., Farooq M.S., Uzair M., Yang S.H., Abushady A.M.	Country-wide, multi-location trials of Green Super Rice lines for yield performance and stability analysis using genetic and stability parameters.	Sci Rep	14(1)	9416	2024		
55136	38674566	Xu Y., Bu W., Xu Y., Fei H., Zhu Y., Ahmad I., Nimir N.E.A., Zhou G., Zhu G.	Effects of Salt Stress on Physiological and Agronomic Traits of Rice Genotypes with Contrasting salt tolerance.	Plants (Basel)	13(8)		2024		
55137	38716336	Phunthong C., Pitaloka M.K., Chutteang C., Ruengphayak S., Arikit S., Vanavichit A.	Rice mutants, selected under severe drought stress, show reduced stomatal density and improved water use efficiency under restricted water conditions.	Front Plant Sci	15	1307653	2024		
55138	38694254	Wang M., Peng X., Wang C., Tang X.	Identification of two plastid transit peptides for construction of pollen-inactivation system in rice.	Mol. Breed.	44(5)	33	2024		
55139	38656141	Luo H., Zhang Q., Lai R., Zhang S., Yi W., Tang X.	Regulation of 2-Acetyl-1-pyrroline Content in Fragrant Rice under Different Temperatures at the Grain-Filling Stage.	J. Agric. Food Chem.	72(18)	10521-10530	2024		
55140	38714133	Basu S., Monika, Kumari S., Kumar G.	Sub1 QTL confers submergence tolerance in rice through nitro-oxidative regulation and phytohormonal signaling.	Plant Physiol. Biochem.	211	108682	2024		
55141	38676602	Presotto A., Hern&#xe1;ndez F., Vercellino R.B., Kruger R.D., Fontana M.L., Ureta M.S., Crepy M., Auge G., Caicedo A.	Introgression from local cultivars is a driver of agricultural adaptation in Argentinian weedy rice.	Mol. Ecol.	33(11)	e17368	2024		
55142	38639776	Kaur S., Seem K., Duhan N., Kumar S., Kaundal R., Mohapatra T.	Comparative miRNome and transcriptome analyses reveal the expression of novel miRNAs in the panicle of rice implicated in sustained agronomic performance under terminal drought stress.	Planta	259(6)	128	2024		
55143	38799415	Zhang K., Nakamura S., Ohtsubo K.I., Mitsui T.	Morphological, Molecular Structural and Physicochemical Characterization of Starch Granules Formed in Endosperm of Rice with Ectopic Overexpression of &#x3b1;-Amylase.	J Appl Glycosci (1999)	71(1)	23-32	2024		
55144	38645792	Mondal K., Kar R.K., Chakraborty A., Dey N.	Concurrent effect of drought and heat stress in rice (<i>Oryza sativa</i> L.): physio-biochemical and molecular approach.	3 Biotech	14(5)	132	2024		
55145	38634187	Wu H., Ren Y., Dong H., Xie C., Zhao L., Wang X., Zhang F., Zhang B., Jiang X., Huang Y., Jing R., Wang J., Miao R., Bao X., Yu M., Nguyen T., Mou C., Wang Y., Wang Y., Lei C., Cheng Z., Jiang L., Wan J.	FLOURY ENDOSPERM24, a heat shock protein 101 (HSP101), is required for starch biosynthesis and endosperm development in rice.	New Phytol.	242(6)	2635-2651	2024	FLO24	ClpB-c, OsClpB-c, OsFLO24, HSP101, OsHSP101
55146	38632121	Sobrino-Mengual G., Alvarez D., Twyman R.M., Gerrish C., Fraser P.D., Capell T., Christou P.	Activation of the native PHYTOENE SYNTHASE 1 promoter by modifying near-miss cis-acting elements induces carotenoid biosynthesis in embryogenic rice callus.	Plant Cell Rep.	43(5)	118	2024		
55147	38568250	Rong C., Zhang R., Liu Y., Chang Z., Liu Z., Ding Y., Ding C.	Purine permease (PUP) family gene PUP11 positively regulates the rice seed setting rate by influencing seed development.	Plant Cell Rep.	43(4)	112	2024		
55148	38685957	Lou X., Su J., Xiong Y., Chen M., Zhang Q., Luan Y., Sun C., Fu Y., Zhang K.	Identification of QTLs responsible for culturability, and fine-mapping of QTL <i>qCBT9</i> related to callus browning derived from Dongxiang common wild rice (<i>Oryza rufipogon</i> Griff.).	Mol. Breed.	44(5)	32	2024		
55149	38660266	Goyal T., Mukherjee A., Chouhan G.K., Gaurav A.K., Kumar D., Abeysinghe S., Verma J.P.	Impact of bacterial volatiles on the plant growth attributes and defense mechanism of rice seedling.	Heliyon	10(8)	e29692	2024		
55150	38687455	Mishra A., Dash M., Barpanda T., Sibadatta A., Sahu P., Sahu P., Jahnavi P., Priyadarsini A., Nanda S., Mohanty M.K.	A Comprehensive Molecular, Biochemical, Histochemical, and Spectroscopic Characterization of Early and Medium Duration Rice Genotypes Investigating Dry Matter Accumulation Efficiencies.	Appl. Biochem. Biotechnol.			2024		
55151	38679667	Tian J., Tang Z., Niu R., Zhou Y., Yang D., Chen D., Luo M., Mou R., Yuan M., Xu G.	Engineering disease-resistant plants with alternative translation efficiency by switching uORF types through CRISPR.	Sci China Life Sci	67(8)	1715-1726	2024		
55152	38666873	Gong W., Proud C., Vinarao R., Fukai S., Mitchell J.	Genome-Wide Association Study of Early Vigour-Related Traits for a Rice (<i>Oryza sativa</i> L.) <i>japonica</i> Diversity Set Grown in Aerobic Conditions.	Biology (Basel)	13(4)		2024		
55153	38607544	Wang J., Hu H., Jiang X., Zhang S., Yang W., Dong J., Yang T., Ma Y., Zhou L., Chen J., Nie S., Liu C., Ning Y., Zhu X., Liu B., Yang J., Zhao J.	Pangenome-Wide Association Study and Transcriptome Analysis Reveal a Novel QTL and Candidate Genes Controlling both Panicle and Leaf Blast Resistance in Rice.	Rice (N Y)	17(1)	27	2024		
55154	38632270	Zhang T., Huang W., Zhang L., Li D.Z., Qi J., Ma H.	Phylogenomic profiles of whole-genome duplications in Poaceae and landscape of differential duplicate retention and losses among major Poaceae lineages.	Nat Commun	15(1)	3305	2024		
55155	38673973	Liu J., Zhang H., Wang Y., Liu E., Shi H., Gao G., Zhang Q., Lou G., Jiang G., He Y.	QTL Analysis for Rice Quality-Related Traits and Fine Mapping of <i>qWCR3</i>.	Int J Mol Sci	25(8)		2024		
55156	38629324	Huber M., de Boer HJ., Romanowski A., van Veen H., Buti S., Kahlon P.S., van der Meijden J., Koch J., Pierik R.	Far-red light enrichment affects gene expression and architecture as well as growth and photosynthesis in rice.	Plant Cell Environ.	47(8)	2936-2953	2024		
55157	38625788	Kamble N.U., Ghosh S., Petla B.P., Achary R.K., Gautam S., Rao V., Salvi P., Hazra A., Varshney V., Majee M.	PROTEIN L-ISOASPARTYL METHYLTRANSFERASE protects enolase dysfunction by repairing isoaspartyl-induced damage and is positively implicated in agronomically important seed traits.	Plant J.	119(1)	413-431	2024		
55158	38641035	Adil M.F., Sehar S., Ma Z., Tahira K., Askri S.M.H., El-Sheikh MA., Ahmad A., Zhou F., Zhao P., Shamsi I.H.	Insights into the alleviation of cadmium toxicity in rice by nano-zinc and Serendipita indica: Modulation of stress-responsive gene expression and antioxidant defense system activation.	Environ. Pollut.	350	123952	2024		
55159	38433262	Lim I., Park Y.J., Ha J.	Evolutionary and synteny analysis of HIS1, BADH2, GBSS1, and GBSS2 in rice: insights for effective introgression breeding strategies.	Sci Rep	14(1)	5226	2024		
55160	38451603	Li X., Wang H., Xiao C., Huang J., Long Y., Lin C., Zhu Y., Wang M., Liu Y.G., Zhang Q.	High-throughput selective sweep SNP-guided cloning of cold-tolerance genes in rice.	Plant Biotechnol. J.	22(8)	2104-2106	2024		
55161	38056278	Karle S.B., Kumar K.	Rice tonoplast intrinsic protein member OsTIP1;2 confers tolerance to arsenite stress.	J. Hazard. Mater.	465	133078	2024		
55162	38629128	Xing M., Nie Y., Huang J., Li Y., Zhao M., Wang S., Wang Y., Chen W., Chen Z., Zhang L., Cheng Y., Yang Q., Sun J., Qiao W.	A wild rice CSSL population facilitated identification of salt tolerance genes and rice germplasm innovation.	Physiol Plant	176(2)	e14301	2024		
55163	38513520	Libron JAMA., Putri H.H., Bore E.K., Chepkoech R., Akagi I., Odama E., Goto K., Tamaru S., Yabuta S., Sakagami J.I.	Halopriming in the submergence-tolerant rice variety improved the resilience to salinity and combined salinity-submergence at the seedling stage.	Plant Physiol. Biochem.	208	108494	2024		
55164	38442599	Wu J., Jiao Y., Ran M., Li J.	The role of an Sb-oxidizing bacterium in modulating antimony speciation and iron plaque formation to reduce the accumulation and toxicity of Sb in rice (Oryza sativa L.).	J. Hazard. Mater.	469	133897	2024		
55165	38509919	Mmbando G.S.	The recent possible strategies for breeding ultraviolet-B-resistant crops.	Heliyon	10(6)	e27806	2024		
55166	38531421	Zhou L., Xiong Y., Asad M.A., Guan X., Zhang Y., Su D., Pan G., Cheng F.	Rice ins(3)P synthase1 (RINO1) participates in embryonic development by regulating inositol-associated changes in auxin synthesis and its distribution.	Physiol Plant	176(2)	e14256	2024		
55167	38486732	Yan Y., Zhu X., Qi H., Zhang H., He J.	Regulatory mechanism and molecular genetic dissection of rice (<i>Oryza sativa</i> L.) grain size.	Heliyon	10(5)	e27139	2024		
55168	38475590	Zhang D., Hu Y., Li R., Tang L., Mo L., Pan Y., Mao B., Shao Y., Zhao B., Lei D.	Research on Physiological Characteristics and Differential Gene Expression of Rice Hybrids and Their Parents under Salt Stress at Seedling Stage.	Plants (Basel)	13(5)		2024		
55169	38168849	Lee S.Y., Jeung J.U., Mo Y.	Allelic combinations of Hd1, Hd16, and Ghd7 exhibit pleiotropic effects on agronomic traits in rice.	G3 (Bethesda)	14(3)		2024		
55170	38535496	Ning Z., Lin K., Gao M., Han X., Guan Q., Ji X., Yu S., Lu L.	Mitigation of Salt Stress in Rice by the Halotolerant Plant Growth-Promoting Bacterium <i>Enterobacter asburiae</i> D2.	J Xenobiot	14(1)	333-349	2024		
55171	38435473	Han R., Yang Z., Wang C., Zhu S., Tang G., Shen X., Duanmu D., Cao Y., Huang R.	Wild species rice <i>OsCERK1</i><i>DY</i>-mediated arbuscular mycorrhiza symbiosis boosts yield and nutrient use efficiency in rice breeding.	Mol. Breed.	44(3)	22	2024		
55172	38436907	Shim K.C., Luong N.H., Tai T.H., Lee G.R., Ahn S.N., Park I.	T-DNA insertion mutants of Arabidopsis DA1 orthologous genes displayed altered plant height and yield-related traits in rice (O. Sativa L.).	Genes Genomics	46(4)	451-459	2024		
55173	38438916	Yang X., Lu J., Shi W.J., Chen Y.H., Yu J.W., Chen S.H., Zhao D.S., Huang L.C., Fan X.L., Zhang C.Q., Zhang L., Liu Q.Q., Li Q.F.	RGA1 regulates grain size, rice quality and seed germination in the small and round grain mutant srg5.	BMC Plant Biol.	24(1)	167	2024	D1	d1, GPA1, GA1, OsGA1, RGA1, dwf1, XA7, RGA, D1/RGA1, D89, TGW5, OsTGW5, SRG5, OsSRG5
55174	38592827	Kumar V., Srivastava A.K., Sharma D., Pandey S.P., Pandey M., Dudwadkar A., Parab H.J., Suprasanna P., Das B.K.	Antioxidant Defense and Ionic Homeostasis Govern Stage-Specific Response of Salinity Stress in Contrasting Rice Varieties.	Plants (Basel)	13(6)		2024		
55175	38427146	Nampei M., Ogi H., Sreewongchai T., Nishida S., Ueda A.	Potassium transporter OsHAK17 may contribute to saline-alkaline tolerant mechanisms in rice (Oryza sativa).	J. Plant Res.	137(3)	505-520	2024		
55176	38459066	Satasiya P., Patel S., Patel R., Raigar O.P., Modha K., Parekh V., Joshi H., Patel V., Chaudhary A., Sharma D., Prajapati M.	Meta-analysis of identified genomic regions and candidate genes underlying salinity tolerance in rice (Oryza sativa L.).	Sci Rep	14(1)	5730	2024		
55177	38457042	Pe&#xf1;uela M., Finke J., Rocha C.	Methylomes as key features for predicting recombination in some plant species.	Plant Mol. Biol.	114(2)	25	2024		
55178	38430361	Gandikota M., Krishnakanth Yadav T., Maram R.R., Kalluru S., Sena M.B., Siddiq E.A., Kalinati Narasimhan Y., Vemireddy L.R., Ghanta A.	Development of activation-tagged gain-of-functional mutants in indica rice line (BPT 5204) for sheath blight resistance.	Mol. Biol. Rep.	51(1)	381	2024		
55179	38474217	Liu Y., Xin W., Chen L., Liu Y., Wang X., Ma C., Zhai L., Feng Y., Gao J., Zhang W.	Genome-Wide Association Analysis of Effective Tillers in Rice under Different Nitrogen Gradients.	Int J Mol Sci	25(5)		2024		
55180	38540384	Wang Y., Xu W., Liu Y., Yang J., Guo X., Zhang J., Pu J., Chen N., Zhang W.	Identification and Transcriptome Analysis of a Novel Allelic Mutant of <i>NAL1</i> in Rice.	Genes (Basel)	15(3)		2024		
55181	38141306	Qiu C.W., Richmond M., Ma Y., Zhang S., Liu W., Feng X., Ahmed I.M., Wu F.	Melatonin enhances cadmium tolerance in rice via long non-coding RNA-mediated modulation of cell wall and photosynthesis.	J. Hazard. Mater.	465	133251	2024		
55182	38566267	Liu X., Gao Y., Li R., Zhang X., Dong G., Zhou J., Zhou Y., Yang Z., Huang J., Dai Q., Yao Y.	Transcriptomic analysis of salt-tolerant and sensitive high-yield japonica rice (Oryza sativa L.) reveals complicated salt-tolerant mechanisms.	Physiol Plant	176(2)	e14275	2024		
55183	38475591	Tang W., Chen H., Zhang S., Tang J., Lin J., Fang X., Chen G., Zhang Y.	A Novel Allele in the Promoter of <i>Wx</i> Decreases Gene Expression and Confers Lower Apparent Amylose Contents in <i>Japonica</i> Rice (<i>Oryza sativa</i> L.).	Plants (Basel)	13(5)		2024		
55184	38454780	Yuan H., Cheng M., Wang R., Wang Z., Fan F., Wang W., Si F., Gao F., Li S.	miR396b/GRF6 module contributes to salt tolerance in rice.	Plant Biotechnol. J.	22(8)	2079-2092	2024		
55185	38253712	Silver B.D., Willett C.G., Maher K.A., Wang D., Deal R.B.	Differences in transcription initiation directionality underlie distinctions between plants and animals in chromatin modification patterns at genes and cis-regulatory elements.	G3 (Bethesda)	14(3)		2024		
55186	38470298	Mei E., He M., Xu M., Tang J., Liu J., Liu Y., Hong Z., Li X., Wang Z., Guan Q., Tian X., Bu Q.	OsWRKY78 regulates panicle exsertion via gibberellin signaling pathway in rice.	J Integr Plant Biol	66(4)	771-786	2024		
55187	38541695	Mousa A.M.A., Ali A.M.A., Omar A.E.A., Alharbi K., Abd El-Moneim D., Mansour E., Elmorsy R.S.A.	Physiological, Agronomic, and Grain Quality Responses of Diverse Rice Genotypes to Various Irrigation Regimes under Aerobic Cultivation Conditions.	Life (Basel)	14(3)		2024		
55188	38482956	Zeng P., Xie T., Shen J., Liang T., Yin L., Liu K., He Y., Chen M., Tang H., Chen S., Shabala S., Zhang H., Cheng J.	potassium transporter OsHAK9 regulates seed germination under salt stress by preventing gibberellin degradation through mediating OsGA2ox7 in rice.	J Integr Plant Biol	66(4)	731-748	2024		
55189	38504521	Liu S., Xu Z., Essemine J., Liu Y., Liu C., Zhang F., Iqbal Z., Qu M.	GWAS unravels acid phosphatase ACP2 as a photosynthesis regulator under phosphate starvation conditions through modulating serine metabolism in rice.	Plant Commun	5(7)	100885	2024		
55190	38542442	Zhang L., Deng B., Peng Y., Gao Y., Hu Y., Bao J.	Population Structure and Genetic Diversity of Shanlan Landrace Rice for GWAS of Cooking and Eating Quality Traits.	Int J Mol Sci	25(6)		2024		
55191	38585089	Chen L., Liu Y., Zheng W., Xu D., Lu B., Sun C.	2 Year Wencheng Waxy Yam Pesticide Residue Investigation and Quality Evaluation.	ACS Omega	9(13)	15134-15142	2024		
55192	38540845	Guo C., Zhang L., Jiang P., Yang Z., Chen Z., Xu F., Guo X., Sun Y., Ma J.	Grain Chalkiness Is Decreased by Balancing the Synthesis of Protein and Starch in Hybrid Indica Rice Grains under Nitrogen Fertilization.	Foods	13(6)		2024		
55193	38491864	Wu X., Chen S., Lin F., Muhammad F., Xu H., Wu L.	Comparative and functional analysis unveils the contribution of photoperiod to DNA methylation, sRNA accumulation, and gene expression variations in short-day and long-day grasses.	Plant J.	118(6)	1955-1971	2024		
55194	38472251	Ghouri F., Sarwar S., Sun L., Riaz M., Haider F.U., Ashraf H., Lai M., Imran M., Liu J., Ali S., Liu X., Shahid M.Q.	Silicon and iron nanoparticles protect rice against lead (Pb) stress by improving oxidative tolerance and minimizing Pb uptake.	Sci Rep	14(1)	5986	2024		
55195	38498081	Sravanraju N., Beulah P., Jaldhani V., Nagaraju P., HariPrasad AS., Brajendra P., Sunitha N., Sundaram R.M., Senguttuvel P.	Genetic enhancement of reproductive stage drought tolerance in RPHR-1005R and derivative rice hybrids through marker-assisted backcross breeding in rice (Oryza sativa L.).	Mol. Biol. Rep.	51(1)	426	2024		
55196	38513530	Chen Z.J., Qu Y.N., Li S.Y., Wang H.W., Ji C.H., Shi X.Z., Yang H., Li X.S.	Insight into the relationship between metabolic enzymes and oxadiazon degradation in Oryza sativa for reducing environmental risks.	Ecotoxicol. Environ. Saf.	274	116242	2024		
55197	38592812	Zheng Q., Teng Z., Zhang J., Ye N.	ABA Inhibits Rice Seed Aging by Reducing H2O2 Accumulation in the Radicle of Seeds.	Plants (Basel)	13(6)		2024		
55198	38509454	Zhao R., Wu W.A., Huang Y.H., Li X.K., Han J.Q., Jiao W., Su Y.N., Zhao H., Zhou Y., Cao W.Q., Zhang X., Wei W., Zhang W.K., Song Q.X., He X.J., Ma B., Chen S.Y., Tao J.J., Yin C.C., Zhang J.S.	An RRM domain protein SOE suppresses transgene silencing in rice.	New Phytol.	243(5)	1724-1741	2024		
55199	38526756	Dong J., Ma Y., Hu H., Wang J., Yang W., Fu H., Zhang L., Chen J., Zhou L., Li W., Nie S., Liu Z., Zhao J., Liu B., Yang T., Zhang S.	The Function of SD1 on Shoot Length and its Pyramiding Effect on Shoot Length and plant height in Rice (Oryza sativa L.).	Rice (N Y)	17(1)	21	2024		
55200	38060676	Shi C., Zou W., Zhu Y., Zhang J., Teng C., Wei H., He H., He W., Liu X., Zhang B., Zhang H., Leng Y., Guo M., Wang X., Chen W., Zhang Z., Qian H., Cui Y., Jiang H., Chen Y., Fei Q., Meyers B.C., Liang W., Qian Q., Shang L.	mRNA cleavage by 21-nucleotide phasiRNAs determines temperature-sensitive male sterility in rice.	Plant Physiol.	194(4)	2354-2371	2024		
55201	38536763	Fitzpatrick T.B., Dalvit I., Chang F.H., Wang K., Fudge J.B., Chang S.H., Maillot B., Gruissem W.	Vitamin B1 enhancement in the endosperm of rice through thiamine sequestration.	Plant Biotechnol. J.	22(8)	2330-2332	2024		
55202	38536474	Yuan Y., Du Y., Delaplace P.	Unraveling the molecular mechanisms governing axillary meristem initiation in plants.	Planta	259(5)	101	2024		
55203	38519445	Abbas W., Shalmani A., Zhang J., Sun Q., Zhang C., Li W., Cui Y., Xiong M., Li Y.	The GW5-WRKY53-SGW5 module regulates grain size variation in rice.	New Phytol.	242(5)	2011-2025	2024	WD40-45	OsWD40-45, OsSGW5, SGW5
55204	38519772	Liu K., Feng Y.J., Guo J.X., Wang G.L., Shan L.L., Gao S.W., Liu Q., Sun H.N., Li X.Y., Sun X.R., Bian J.Y., Kwon T.	Argon non-thermal plasma treatment promotes the development of rice (Oryza sativa L.) in saline alkali environments.	Protoplasma			2024		
55205	38514802	Akabane T., Suzuki N., Ikeda K., Yonezawa T., Nagatoishi S., Matsumura H., Yoshizawa T., Tsuchiya W., Kamino S., Tsumoto K., Ishimaru K., Katoh E., Hirotsu N.	THOUSAND-grain weight 6, which is an IAA-glucose hydrolase, preferentially recognizes the structure of the indole ring.	Sci Rep	14(1)	6778	2024		
55206	38609251	Guo Y., Fang R., Zhen Y., Qiao D., Zhao S., Zhang B.	Ion presence during thermal processing modulates the performance of rice albumin/anthocyanin binary system.	Food Res. Int.	184	114274	2024		
55207	38509120	Durbha S.R., Siromani N., Jaldhani V., Krishnakanth T., Thuraga V., Neeraja C.N., Subrahmanyam D., Sundaram R.M.	Dynamics of starch formation and gene expression during grain filling and its possible influence on grain quality.	Sci Rep	14(1)	6743	2024		
55208	38521318	Geng D.H., Tang N., Gan J., Cheng Y.	Two-step modification of pullulanase and transglucosidase: A novel way to improve the gel strength and reduce the digestibility of rice starch.	Int. J. Biol. Macromol.	266(Pt 1)	130992	2024		
55209	38612714	Du L., Li X., Ding Y., Ma D., Yu C., Zhao H., Wang Y., Liu Z., Duan L.	Design, Synthesis and Biological Evaluation of Novel Phenyl-Substituted Naphthoic Acid Ethyl Ester Derivatives as Strigolactone Receptor Inhibitor.	Int J Mol Sci	25(7)		2024		
55210	38611457	Xie X., Pei M., Liu S., Wang X., Gong S., Chen J., Zhang Y., Wang Z., Lu G., Li Y.	Comprehensive Analysis of Autophagy-Related Genes in Rice Immunity against <i>Magnaporthe oryzae</i>.	Plants (Basel)	13(7)		2024		
55211	38530496	Garc&#xed;a-Romeral J., Castanera R., Casacuberta J., Domingo C.	Deciphering the Genetic Basis of Allelopathy in japonica Rice Cultivated in Temperate Regions Using a Genome-Wide Association Study.	Rice (N Y)	17(1)	22	2024		
55212	38514635	Rong F., Lv Y., Deng P., Wu X., Zhang Y., Yue E., Shen Y., Muhammad S., Ni F., Bian H., Wei X., Zhou W., Hu P., Wu L.	Switching action modes of miR408-5p mediates auxin signaling in rice.	Nat Commun	15(1)	2525	2024		
55213	38517890	Wang D., Wei L., Ma J., Wan Y., Huang K., Sun Y., Wen H., Chen Z., Li Z., Yu D., Cui H., Wu J., Wu Y., Kim S.T., Zhao J., Parker J.E., Tsuda K., Jiang C., Wang Y.	Bacillus cereus NJ01 induces SA- and ABA-mediated immunity against bacterial pathogens through the EDS1-WRKY18 module.	Cell Rep	43(4)	113985	2024		
55214	38668309	Jiang W., Wang X., Wang Y., Du Y., Zhang S., Zhou H., Feng N., Zheng D., Ma G., Zhao L.	S-ABA Enhances Rice Salt Tolerance by Regulating Na+/K+ Balance and Hormone Homeostasis.	Metabolites	14(4)		2024		
55215	38526880	Zong W., Song Y., Xiao D., Guo X., Li F., Sun K., Tang W., Xie W., Luo Y., Liang S., Zhou J., Xie X., Liu D., Chen L., Wang H., Liu Y.G., Guo J.	Dominance complementation of parental heading date alleles of Hd1, Ghd7, DTH8, and PRR37 confers transgressive late maturation in hybrid rice.	Plant J.	118(6)	2108-2123	2024		
55216	38522062	Mondal K., Singh R.K., Prasad M., Dey N.	Newly identified Pijx gene: a weapon against both seedling and panicle blast in rice.	Plant Cell Rep.	43(4)	105	2024		
55217	38433446	Miao Y., You H., Liu H., Zhao Y., Zhao J., Li Y., Shen Y., Tang D., Liu B., Zhang K., Cheng Z.	RETINOBLASTOMA RELATED 1 switches mitosis to meiosis in rice.	Plant Commun	5(6)	100857	2024		
55218	37909415	Wang Y., Jiang C., Zhang X., Yan H., Yin Z., Sun X., Gao F., Zhao Y., Liu W., Han S., Zhang J., Zhang Y., Zhang Z., Zhang H., Li J., Xie X., Zhao Q., Wang X., Ye G., Li J., Ming R., Li Z.	Upland rice genomic signatures of adaptation to drought resistance and navigation to molecular design breeding.	Plant Biotechnol. J.	22(3)	662-677	2024		
55219	38484657	Kaur J., Tiwari N., Asif M.H., Dharmesh V., Naseem M., Srivastava P.K., Srivastava S.	Integrated genome-transcriptome analysis unveiled the mechanism of Debaryomyces hansenii-mediated arsenic stress amelioration in rice.	J. Hazard. Mater.	469	133954	2024		
55220	38592774	Yin M., Tong X., Yang J., Cheng Y., Zhou P., Li G., Wang Y., Ying J.	Dissecting the Genetic Basis of Yield Traits and Validation of a Novel Quantitative Trait Locus for grain width and Weight in Rice.	Plants (Basel)	13(6)		2024		
55221	38513519	Dawane A., Deshpande S., Vijayaraghavreddy P., Vemanna R.S.	Polysome-bound mRNAs and translational mechanisms regulate drought tolerance in rice.	Plant Physiol. Biochem.	208	108513	2024		
55222	38585130	Ahmad R., Ullah I., Ullah Z., Alam S., Rady A., Khan S.S., Durrani I.S.	Genomic Exploration: Unraveling the Intricacies of Indica Rice <i>Oryza sativa</i> L. Germin-Like Protein Gene 12-3 (<i>Os</i>GLP12-3) Promoter via Cloning, Sequencing, and <i>In Silico</i> Analysis.	ACS Omega	9(13)	15271-15281	2024	GLP12-3	OsGLP12-3, OsCDP12.3, CDP12.3
55223	38488805	Li C., Wu J., Fu S., Xu Y., Wang Y., Yang X., Lan Y., Lin F., Du L., Zhou T., Zhou X.	Development of a transgenic rice line with strong and broad resistance against four devastating rice viruses through expressing a single hairpin RNA construct.	Plant Biotechnol. J.	22(8)	2142-2144	2024		
55224	38595907	Wakatsuki H., Takimoto T., Ishigooka Y., Nishimori M., Sakata M., Saida N., Akagi K., Makowski D., Hasegawa T.	A dataset for analyzing the climate change response of grain quality of 48 Japanese rice cultivars with contrasting levels of heat tolerance.	Data Brief	54	110352	2024		
55225	38555510	Che J., Li X., Ouyang Y.	To open early or late: Decoding the mystery of&#xa0;diurnal floret opening time in rice.	Plant Commun	5(5)	100889	2024		
55226	38549236	Plackett A.R.G., Hibberd J.M.	Rice bundle sheath cell shape is regulated by the timing of light exposure during leaf development.	Plant Cell Environ.	47(7)	2597-2613	2024		
55227	38552264	Zhang L., Li T., Wang L., Cao K., Gao W., Yan S., Cao J., Lu J., Ma C., Chang C., Zhang H.	A wheat heat shock transcription factor gene, TaHsf-7A, regulates seed dormancy and germination.	Plant Physiol. Biochem.	210	108541	2024		
55228	38611497	Li T., Li H., Zhu C., Yang K., Lin Z., Wang J., Gao Z.	Unveiling the Biological Function of <i>Phyllostachys edulis</i> FBA6 (<i>PeFBA6</i>) through the Identification of the Fructose-1,6-Bisphosphate Aldolase Gene.	Plants (Basel)	13(7)		2024		
55229	38723594	Chen G., Gao J., Wu S., Chang Y., Chen Z., Sun J., Zhang L., Wu J., Sun X., William Paul Quick, Cui X., Zhang Z., Lu T.	The OsMOB1A-OsSTK38 kinase complex phosphorylates CYCLIN C, controlling grain size and weight in rice.	Plant Cell	36(8)	2873-2892	2024	MOB1A,STK38	OsMOB1A,OsSTK38, TINY1, OsTINY1
55230	38831046	Huang K., Wang Y., Li Y., Zhang B., Zhang L., Duan P., Xu R., Wang D., Liu L., Zhang G., Zhang H., Wang C., Guo N., Hao J., Luo Y., Zhu X., Li Y.	Modulation of histone acetylation enables fully mechanized hybrid rice breeding.	Nat Plants	10(6)	954-970	2024	GSE3	OsGSE3
55231	38003663	Chen G., Hu H., Chen X., Chen J., Wang S., Ning H., Zhu C., Yang S.	TFIIB-Related Protein brp5/PTF2 Is Required for Both Male and Female Gametogenesis and for Grain Formation in Rice.	Int J Mol Sci	24(22)		2023	BRP5	OsBRP5, PTF2, OsPTF2, OsBRP5/PTF2
55232	37849832	Gao R., Lu Y., Wu N., Liu H., Jin X.	Comprehensive study of serine/arginine-rich (SR) gene family in rice: characterization, evolution and expression analysis.	PeerJ	11	e16193	2023	SR45A	OsSR45a
55233	38447063	Wang W., Li Y., Yang S., Wu J., Ma C., Chen Y., Sun X., Wu L., Liang X., FU Q., Xu Z., Li L., Huang Z., Zhu J., Jia X., Ye X., Chen R.	Stress response membrane protein OsSMP2 negatively regulates rice tolerance to drought.	J. Exp. Bot.	75(11)	3300-3321	2024	SMP2	OsSMP2
55234	38701348	Chen Y., Dan Z., Li S.	GROWTH REGULATING FACTOR 7-mediated arbutin metabolism enhances rice salt tolerance.	Plant Cell	36(8)	2834-2850	2024	UGT706E1,CGT1	OsUGT706E1, OsUGT1, UGT1,OsUGT5, UGT5, OsCGT1
55235	38531358	Vlad D., Zaidem M., Perico C., Sedelnikova O., Bhattacharya S., Langdale JA	The WIP6 transcription factor TOO MANY LATERALS specifies vein type in C4 and C3 grass leaves	Curr Biol.	34	1670-1686	2024	TML	OsZOS9-04, OsTML, OsWIP6, WIP6, ZOS9-04
55236	0	Yang H., Liu L., Wu K., Liu S., Liu X., Tian Y., Wang Y., Duan E., Lei J., Bao X., Chen R., Chen X., Ji Y., Zhang Y., Wang Y., Wan J.	FLOURY AND SHRUNKEN ENDOSPERM6 Encodes a Glycosyltransferase and is Essential for the Development of Rice Endosperm	ournal of Plant Biology	65	187-198	2002	FSE6	OsGINT1, GINT1, OsFSE6
55237	39383255	He Q., Wu H., Zeng L., Yin C., Wang L., Tan Y., Lv W., Liao Z., Zheng X., Zhang S., Han Q., Wang D., Zhang Y., Xiong G., Wang Q.	OsKANADI1 and OsYABBY5 regulate rice plant height by targeting GIBERELLIN 2-OXIDASE6.	Plant Cell			2024		
55238	39041484	Doll N.M.	New insights into alternative splicing in rice using population-level transcriptomics.	Plant Cell	36(10)	4276-4277	2024		
55239	39405464	Chen X., Liu K., Luo T., Zhang B., Yu J., Ma D., Sun X., Zheng H., Xin B., Xia J.	Four MYB transcription factors regulate suberization and non-localized lignification at the root endodermis in rice.	Plant Cell			2024		
55240	39406292	Shen Y., Li J., Cai X., Jin J., Li D., Wu H., Dong W., Guo Y., Sun M., Sun X.	Investigation of the potential regulation of the UDP-glycosyltransferase genes on rice grain size and abiotic stress response.	Gene	933	149003	2025		
55241	39417582	Lorenzo C.D.	Small but mighty: OsKANADI1 and OsYABBY5 regulate plant stature by tuning GA metabolism in rice.	Plant Cell			2024		
55242	39437261	Kirschner G.K.	Building barriers: The role of MYB genes in rice root adaptation.	Plant Cell			2024		
55243	39441092	Bertolini E., Manjunath M., Ge W., Murphy M.D., Inaoka M., Fliege C., Eveland A.L., Lipka A.E.	Genomic prediction of cereal crop architectural traits using models informed by gene regulatory circuitries from maize.	Genetics			2024		
55244	39083298	Zhao H.Y., Shan J.X., Ye W.W., Dong N.Q., Kan Y., Yang Y.B., Yu H.X., Lu Z.Q., Guo S.Q., Lei J.J., Liao B., Lin H.X.	A QTL GN1.1, encoding FT-L1, regulates grain number and yield by modulating polar auxin transport in rice.	J Integr Plant Biol	66(10)	2158-2174	2024		
55245	39145531	Zhao J., Shao J., Zeng Z., Li Z., Sun S., Peng L., Huang Z., Wang Z., He Y.	Knocking out isopropylmalate synthase simultaneously improves grain appearance and nutritional quality in rice.	Plant J.	120(1)	159-173	2024		
55246	39362435	Wu B., Yang G., Huang W., Ruan J., Fang Z.	Altered expression of amino acid permease OsAAP11 mediates bud outgrowth and tillering by regulating transport and accumulation of amino acids in rice.	Int. J. Biol. Macromol.	280(Pt 4)	136230	2024		
55247	39351655	Zheng Y., Chen M., Xiong D., Meng X., Yu H., Wang H., Li J.	Generation of OsGRF4 and OsSNAC1 alleles for improving rice agronomic traits by CRISPR/Cas9-mediated manipulation of transposable elements.	Plant Biotechnol. J.			2024		
55248	39399692	Mou C., Chen Y., Zhang P., Tong Q., Zhu Z., Ma T., Wang P., Fu K., Chen C., Huang Y., Zhang F., Hao Q., Zhang M., Liu S., Jiang L., Wan J.	Prolongation of seed viability and grain quality in rice by editing <i>OsLOX1</i> using CRISPR/Cas9.	Mol. Breed.	44(10)	72	2024		
55249	39506992	Barua P., Phukon M., Munda S., Ranga V., Sruthi R., Borah J.L., Das J., Dutta P., Bhattacharyya A., Modi M.K., Chetia S.K.	Identification of significant SNPs and candidate loci for blast disease resistance via GWAS and population structure analysis in ARC panel of <i>Oryza sativa</i>.	Physiol Mol Biol Plants	30(10)	1673-1689	2024		
55250	39082752	Yu X., Xie Y., Wang L., Li L., Jiang S., Zhu Y., Xie H., Cui L., Wei Y., Xiao Y., Cai Q., Zheng Y., Chen L., Xie H., Zhang J.	Transcription factor NAC78 cooperates with NAC78 interacting protein 6 to confer drought tolerance in rice.	Plant Physiol.	196(2)	1642-1658	2024		
55251	39354718	Liu P., Sun L., Zhang Y., Tan Y., Zhu Y., Peng C., Wang J., Yan H., Mao D., Liang G., Liang G., Li X., Liang Y., Wang F., He Z., Tang W., Huang D., Chen C.	The metal tolerance protein OsMTP11 facilitates cadmium sequestration in the vacuoles of leaf vascular cells for restricting its translocation into rice grains.	Mol Plant	17(11)	1733-1752	2024		
55252	39226761	Qin X., Zhang X., Ma C., Yang X., Hu Y., Liu Y., Hu Y., Wang D., Xiaodong Lv, Wang C., Shou J., Li B.	Rice OsCIPK17-OsCBL2/3 module enhances shoot Na+ exclusion and plant salt tolerance in transgenic Arabidopsis.	Plant Physiol. Biochem.	215	109034	2024		
55253	39360381	Li Y., Zhang W., Li M., Ling X., Guo D., Yang Y., Liu Q., Zhang B., Wang J.	Discovery of OsODC as a key enhancer of aroma and development of highly fragrant rice.	Plant Commun		101141	2024		
55254	39351644	Xu X., Sun S.K., Gao A., Huang X.Y., Wirtz M., Hell R., Zhao F.J.	Biofortifying multiple micronutrients and decreasing arsenic accumulation in rice grain simultaneously by expressing a mutant allele of OAS-TL gene.	New Phytol.			2024		
55255	39154420	Chatterjee Y., Pareek A., Singla-Pareek SL.	OsLdh7, a rice lactate dehydrogenase, confers stress resilience in rice under cadmium stress through NAD+/NADH regulation.	Plant Physiol. Biochem.	215	109009	2024		
55256	39356169	Mani B., Kaur I., Dhingra Y., Saxena V., Krishna G.K., Kumar R., Chinnusamy V., Agarwal M., Katiyar-Agarwal S.	Tetraspanin 5 orchestrates resilience to salt stress through the regulation of ion and reactive oxygen species homeostasis in rice.	Plant Biotechnol. J.			2024		
55257	39362889	Zhang Q., Wu R., Hong T., Wang D., Li Q., Wu J., Zhang H., Zhou K., Yang H., Zhang T., Liu J., Wang N., Ling Y., Yang Z., He G., Zhao F.	Natural variation in the promoter of qRBG1/OsBZR5 underlies enhanced rice yield.	Nat Commun	15(1)	8565	2024		
55258	39390531	Chang Y., Liu J., Guo M., Ouyang W., Yan J., Xiong L., Li X.	Drought-responsive dynamics of H3K9ac-marked 3D chromatin interactions are integrated by OsbZIP23-associated super-enhancer-like promoter regions in rice.	Genome Biol.	25(1)	262	2024		
55259	39365009	Safi A.	The role of OsDGD1 in phosphate starvation: how lipid remodeling regulates jasmonic acid and root development in rice.	Plant Physiol.			2024		
55260	39389316	Zhu T., Du M., Chen H., Li G., Wang M., Meng L.	Recent insights into anthocyanin biosynthesis, gene involvement, distribution regulation, and domestication process in rice (Oryza sativa L.).	Plant Sci.	349	112282	2024		
55261	39421143	Peng B., Liu Y., Sun X., Zhao Q., Qiu J., Tian X., Peng J., Zhang Z., Wang Y., Huang Y., Pang R., Zhou W., Qi Y., Sun Y., Wang Q., He Y.	The <i>OsGAPC3</i> mutation significantly affects grain quality traits and improves the nutritional quality of rice.	Front Plant Sci	15	1470316	2024		
55262	39378337	Lim C., Kang K., Lim J., Lee H., Cho S.H., Paek N.C.	RICE LONG GRAIN 3 delays dark-induced senescence by downregulating abscisic acid signaling and upregulating reactive oxygen species scavenging activity.	Plant J.			2024		
55263	39369362	Swain N., Sahoo R.K., Jeughale K.P., Sarkar S., Selvaraj S., Parameswaran C., Katara J., Bose L.K., Samantaray S.	Rice homolog of Arabidopsis XYLEM NAC DOMAIN 1 (OsXND1), a NAC transcription factor regulates drought stress responsive root system architecture in indica rice.	Mol. Genet. Genomics	299(1)	94	2024		
55264	39393190	Zhang M., Zhou B., Cheng Y., Zhong C., Yu M., Pan T., Zhu Y.	Involvement of plasma membrane H+-ATPase in the nitrate-nutrition uptake and utilization in indica rice.	J. Plant Physiol.	303	154368	2024		
55265	39409107	Zheng Q., Zhou Z., Li X., Lan Y., Huang R., Zhang S., Li H.	<i>Heading date 3a</i> Stimulates Tiller Bud Outgrowth in <i>Oryza sativa</i> L. through Strigolactone Signaling Pathway.	Int J Mol Sci	25(19)		2024		
55266	39456694	Yin X., Gao Q., Wang F., Liu W., Luo Y., Zhong S., Feng J., Bai R., Chen L., Dai X., Liang M.	Marker-Assisted Selection of Jacalin-Related Lectin Genes <i>OsJRL45</i> and <i>OsJRL40</i> Derived from Sea Rice 86 Enhances salt tolerance in Rice.	Int J Mol Sci	25(20)		2024		
55267	39387827	Wang X., Diao Z., Cao C., Liu Y., Xia N., Zhang Y., Lu L., Kong F., Zhou H., Chen L., Zhang J., Wang B., Huang R., Tang D., Li S.	The receptor-like cytoplasmic kinase OsBSK1-2 regulates immunity via an HLH/bHLH complex.	J Integr Plant Biol			2024		
55268	39361658	Su S., Jiang Y., Zhu X., Yu S., Wang F., Xue L., Cui H.	calcium-dependent protein kinase 5 and 13 enhance salt tolerance in rice by directly activating OsMPK3/6 kinases.	Plant Physiol.			2024		
55269	39415118	Jo S.H., Kim J.H., Moon J.H., Yang S.Y., Baek J.K., Song Y.S., Shon J.Y., Chung N.J., Lee H.S.	Effects of mineral fertilization (NPK) on combined high temperature and ozone damage in rice.	BMC Plant Biol.	24(1)	974	2024		
55270	39402219	Song W., Zhang J., Lu W., Liang S., Cai H., Guo Y., Chen S., Wang J., Guo T., Liu H., Rao D.	A Cyclin Gene OscycB1;5 Regulates Seed callus induction in Rice Revealed by Genome Wide Association Study.	Rice (N Y)	17(1)	64	2024		
55271	39417995	Yang L., Zhang P.T., Li M.M., Wang X.Y., Zhao Q.Q., Lin J.J., Zhao J.Q., Liu B.S., Li S., Ji R., Fang J.C., Sun Y.	(<i>E</i>)-&#x3b2;-Farnesene Protects Rice from Rice Striped Stem Borer Attack by Inhibiting Its Beneficial Gut Microbes.	J. Agric. Food Chem.	72(43)	23716-23726	2024		
55272	39457073	Liu J., Yuan X., Tian M., Chen J., Chen C., Luo Z., Guo T., Huo X., Xiao W.	<i>OsNAL11</i> and <i>OsGASR9</i> Regulate the Low-Temperature Germination of Rice Seeds by Affecting GA Content.	Int J Mol Sci	25(20)		2024		
55273	39401095	Zheng X., Tang X., Wu Y., Zheng X., Zhou J., Han Q., Tang Y., Fu X., Deng J., Wang Y., Wang D., Zhang S., Zhang T., Qi Y., Zhang Y.	An efficient CRISPR-Cas12a-mediated MicroRNA knockout strategy in plants.	Plant Biotechnol. J.			2024		
55274	39414150	Cao S., Peng L., Yu J., Li Z., Wang Z., Ma D., Sun X., Zheng H., Zhang B., Chen X., Chen Z., Xia J.	Overexpression of OsGASR1 promotes Al tolerance in rice.	Plant Sci.	350	112294	2024		
55275	39425973	Nie S., Huang W., He C., Wu B., Duan H., Ruan J., Zhao Q., Fang Z.	transcription factor OsMYB2 Triggers Amino Acid Transporter OsANT1 expression to Regulate Rice Growth and salt tolerance.	Plant Physiol.			2024		
55276	39425265	Karavolias N.G., Patel-Tupper D., Gallegos Cruz A., Litvak L., Lieberman S.E., Tjahjadi M., Niyogi K.K., Cho M.J., Staskawicz B.J.	Engineering quantitative stomatal trait variation and local adaptation potential by cis-regulatory editing.	Plant Biotechnol. J.			2024		
55277	39483679	Zhang J., Wang X., Dou G., Meng D., Tang C., Lv J., Wang N., Wang X., Li J., Bao Y., Zhang G., Huang T., Shi Y.	Genome-wide identification of rice <i>CXE</i> gene family and mining of alleles for potential application in rice improvement.	Front Plant Sci	15	1435420	2024		
55278	39417650	Cho L.H., Yoon J., Baek G., Tun W., Kwon H.C., Lee D.W., Choi S.H., Lee Y.S., Jeon J.S., An G.	Sucrose induces flowering by degradation of the floral repressor Ghd7 via K48-linked polyubiquitination in rice.	J Integr Plant Biol			2024		
55279	39400347	Ma A., Sun J., Feng L., Xue Z., Wu W., Song B., Xiong X., Wang X., Han B., Osbourn A., Qi X.	Functional diversity of oxidosqualene cyclases in genus Oryza.	New Phytol.			2024		
55280	39474223	Chen J., Zhang J., Fang C., Ren L., Lan T., Wu W., Lan T.	<i>OsPDIL1-5</i>: dual role in promoting growth and development while modulating drought stress tolerance in rice (<i>Oryza sativa</i> L.).	Front Plant Sci	15	1479726	2024		
55281	39458871	Zhang F., Wang J., Chen Y., Huang J., Liang W.	Genome-Wide Identification of MKK Gene Family and Response to Hormone and Abiotic Stress in Rice.	Plants (Basel)	13(20)		2024	MKK5,MKK1,MKK10-1,MKK10-2,MKK3,SMG1,MKK6	OsMKK5, BUD1, OsBUD1,OsMKK1, OsMEK2, MEK2, OsMAPKK1, MAPKK1, OsMAP2K2, MAP2K2,OsMKK10-1, MPKK10.1 ,OsMKK10-2, MKK10-2D, OsMPKK10-2, MPKK10-2, OsMKK10.2, MKK10.2, OsMPKK10-2D, MPKK10-2D, MPKK10.2, OsMAPKK10-2, MAPKK10-2, OsMEK3. MEK3,OsMKK3, OsMAPKK3, MAPKK3, OsMEK8a, MEK8a, OsMEK3, MEK3,OsMKK4, MKK4, OsMKK4/SMG1, OsMAPKK4, MAPKK4, OsMEK4, MEK4, OsSMG1, SMG1/OsMEK6, OsMEK6, MEK6, OsSTS, STS,OsMKK6, OsMEK1, MEK1, OsMAPKK6, MAPKK6, OsMPKK6, MPKK6, OsMAP1, MAP1
55282	39405437	Sun Y., Gu X., Qu C., Jin N., Qin T., Jin L., Huang J.	OsPUB75-OsHDA716 mediates deactivation and degradation of OsbZIP46 to negatively regulate drought tolerance in rice.	Plant Physiol.			2024		
55283	39454302	Yan-Jia X., Si-Si Y., Yan-Mei Z., Xin-Yue W., Xiao-Yu Z., Lan-Lan D., Han-Ren L., Yong-Sheng Z., Qiu-Hua C., Hua-An X., Jian-Fu Z.	MATE transporter OsMATE2 mediates root growth, grain size and weight by interacting with Mn-SOD and PABP in rice.	Biochem. Biophys. Res. Commun.	736	150821	2024		
55284	39332196	Hu S., Chen J., Wang H., Ji E., Su X., Zhu M., Xiang X., Gong L., Zhou Q., Xiao X., Wu G., Zha H.	The transcription factor OsNAC5 regulates cadmium accumulation in rice.	Ecotoxicol. Environ. Saf.	285	117102	2024		
55285	39406002	Chang J., Zhang R., Fu Z., Wang Y., Lei J., Cheng J., Ren C., Xu K., Gu C., Song Y., Zeng R., Qin Y., Zhang H., Liu J.	OsCNGC7 modulates calcium dynamics and accelerates leaf senescence in rice.	Plant Physiol. Biochem.	216	109193	2024		
55286	39437670	Sha H., Yu Y., Han Y., Liu J., Han Z., Zhao Y., Huo C., Chang H., Zhang F., Wang J., Fang J.	Combination of maleic hydrazide and coumarin inhibits rice seed germination involving reactive oxygen species accumulation, ABA metabolism and starch degradation.	Plant Physiol. Biochem.	217	109202	2024		
55287	39414147	Sohail A.	Methyltransferase 1 (OsMTS1) interacts with hydroxycinnamoyltransferase 1 (OsHCT1) and promotes heading by upregulating heading date 1 (Hd1).	Plant Sci.	350	112291	2024		
55288	39427319	Yan L., Jiao B., Duan P., Guo G., Zhang B., Jiao W., Zhang H., Wu H., Zhang L., Liang H., Xu J., Huang X., Wang Y., Zhou Y., Li Y.	Control of grain size and weight by the RNA-binding protein EOG1 in rice and wheat.	Cell Rep	43(11)	114856	2024		
55289	39164217	Kim Y.K.	Knockout of OsWOX13 moderately delays flowering in rice under natural long-day conditions.	Biosci. Biotechnol. Biochem.	88(11)	1307-1315	2024		
55290	39436822	Guo Y., Liu L., Shi X., Yu P., Zhang C., Liu Q.	Overexpression of the RAV Transcription Factor <i>OsAAT1</i> Confers Enhanced Arsenic Tolerance by Modulating Auxin Hemostasis in Rice.	J. Agric. Food Chem.	72(44)	24576-24586	2024		
55291	39438299	Miao J., Bu L., Tan W., Wang P., Li X., Li X., Chen C., Zhang K., Shen W., Gong Z., Bahetibieke G., Ren L., Liang G., Zhou Y.	OsPP2C49, a Negative Regulatory Factor in the Abscisic Acid Signaling Pathway, Positively Regulates grain yield in Rice.	Rice (N Y)	17(1)	65	2024		
55292	39467748	Qi W., Wang J., Xuan Q., Bi Y., Zhu M., Zhang Y., Yao S., Wang J., Zhang Y., Liang W.	[Characterization of a Rho GDP dissociation inhibitor gene <i>OsRhoGDI1</i> from rice].	Sheng Wu Gong Cheng Xue Bao	40(10)	3515-3529	2024		
55293	39467747	Hu S., Liu D., Guo B., Li H., Zhu Q., Zhang Z.	[OsSTP1 mediates sucrose allocation to regulate rice responses to different nitrogen supply levels].	Sheng Wu Gong Cheng Xue Bao	40(10)	3500-3514	2024		
55294	39453460	Panda S., Anandan A., Shafi K.M., Naika M.B.N., Sowdhamini R., Vanishree G., Sarkar S., Travis A.J., Norton G.J., Price A.H.	Genome-wide association study reveals effect of nsSNPs on candidate genes in rice during iron deficiency.	Funct. Integr. Genomics	24(6)	198	2024		
55295	39448698	Ubaidillah M., Farooq M., Kim K.M.	Enhancing salt tolerance in rice genotypes through exogenous melatonin application by modulating growth patterns and antistress agents.	Sci Rep	14(1)	25217	2024		
55296	39449241	Zhu J., Li M., Lu H., Li Y., Ren M., Xu J., Ding W., Wang Y., Wu Y., Liu Y., Wu Z., Mo X., Mao C.	The t-SNARE protein OsSYP132 is required for vesicle fusion and root morphogenesis in rice.	New Phytol.			2024		
55297	39436860	Xie T., Xu J., Hu W., Shan S., Gao H., Shen J., Chen X., Jia Y., Gao X., Huang J., Zhang H., Cheng J.	OsAAH confers salt tolerance in rice seedlings.	Plant J.			2024		
55298	39445791	Wei S., Chen M., Wang F., Tu Y., Xu Y., Fu L., Zeng F., Zhang G., Wu D., Shen Q.	OsCaM1-1 Is Responsible for salt tolerance by Regulating Na+/K+ Homoeostasis in Rice.	Plant Cell Environ.			2024		
55299	39432737	Zu H., Zhang J., Bai W., Kuai P., Cheng J., Lu J., Lou Y., Li R.	Jasmonate-mediated polyamine oxidase 6 drives herbivore-induced polyamine catabolism in rice.	Plant J.			2024		
55300	39455567	Zhang J., Zhang Y., Chen J., Xu M., Guan X., Wu C., Zhang S., Qu H., Chu J., Xu Y., Gu M., Liu Y., Xu G.	Sugar transporter modulates nitrogen-determined tillering and yield formation in rice.	Nat Commun	15(1)	9233	2024		
55301	39489992	Liu R., Zhao D., Li P., Xia D., Feng Q., Wang L., Wang Y., Shi H., Zhou Y., Chen F., Lou G., Yang H., Gao H., Wu B., Chen J., Gao G., Zhang Q., Xiao J., Li X., Xiong L., Li Y., Li Z., You A., He Y.	Natural variation in OsMADS1 transcript splicing affects rice grain thickness and quality through influencing monosaccharide loading to endosperm.	Plant Commun		101178	2024		
55302	39441559	Yuan H., Cheng M., Fan F., Zheng X., Wang R., Si F., Luo X., Li N., Li S.	OsGRF6-OsYUCCA1/OsWRKY82 Signaling Cascade Upgrade Grain Yield and Bacterial Blight Resistance in Rice.	Adv Sci (Weinh)		e2407733	2024		
55303	39440542	Wang Y.C., Liu X.L., Zhang Z., Zhou L., Zhang Y.F., Zhu B.S., Yang Y.M., Zhong X., Su Z.X., Ma P.Y., Huang X.H., Yang Z.N., Zhu J.	The Residual Activity of Fatty acyl-CoA reductase Underlies Thermo-Sensitive genic male sterility in Rice.	Plant Cell Environ.			2024		
55304	39468918	Zhang H., Guo D., Lei Y., Lozano-Torres JL., Deng Y., Xu J., Hu L.	Cover crop rotation suppresses root-knot nematode infection by shaping soil microbiota.	New Phytol.			2024		
55305	39463330	Tian H., Wang R., Li J., Zhao S., Teotia S., Gao B., Cheng Y., Li F., Liu Y., Zhang J., Zhao Y., Zhao Q., Peng T.	Regulation of Rice grain weight by Fatty Acid Composition: Unveiling the Mechanistic Roles of <i>OsLIN6</i> by OsARF12.	J. Agric. Food Chem.	72(44)	24655-24667	2024		
55306	39465494	Zhou G., Nan N., Li N., Li M., Ma A., Ye Q., Wang J., Xu Z.Y.	Active DNA Demethylation Mediated by <i>OsGADD45a2</i> Regulates Growth, Development, and Blast (<i>Magnaporthe oryzea</i>) Resistance in Rice.	J. Agric. Food Chem.	72(44)	24300-24310	2024		
55307	39470443	Yang M., Sakuraba Y., Yanagisawa S.	Downregulation of the Rice HRS1 HOMOLOG3 transcriptional repressor gene due to N deficiency directly co-activates ammonium and phosphate transporter genes.	J. Exp. Bot.			2024		
55308	39466751	Cheaib M., Nguyen H.T., Couderc M., Serret J., Soriano A., Larmande P., Richter C., Junker B.H., Raorane M.L., Petitot A.S., Champion A.	Transcriptomic and metabolomic reveal OsCOI2 as the jasmonate-receptor master switch in rice root.	PLoS ONE	19(10)	e0311136	2024		
55309	39480226	Liu Q., Hou S., Zhang Y., Zhou D., Guo L., Zhao S., Ding C.	Dielectric Barrier Discharge Cold Plasma Improves Storage Stability in Paddy Rice by Activating the Phenylpropanoid Biosynthesis Pathway.	J. Agric. Food Chem.			2024		
55310	39041424	Xiao C., Guo H., Li R., Wang Y., Yin K., Ye P., Hu H.	A module involving HIGH LEAF TEMPERATURE1 controls instantaneous water use efficiency.	Plant Physiol.	196(2)	1579-1594	2024		
55311	39397300	Balone T., Pratama A.N., Chansongkram W., Boonsrangsom T., Sujipuli K., Ratanasut K.	Development and Validation of an SNP Marker for Identifying Xanthomonas oryzae pv. oryzae Thai Isolates That Break xa5-Mediated Bacterial Blight Resistance in Rice.	Plant Pathol. J.	40(5)	451-462	2024		
55312	39439112	Balcerowicz M.	A new angle for crop improvement? The RING E3 ubiquitin ligase LATA1 impacts tiller angle in rice.	Plant J.	120(2)	427-428	2024		
55313	38976569	Liu H., You H., Liu C., Zhao Y., Chen J., Chen Z., Li Y., Tang D., Shen Y., Cheng Z.	GLUTAMYL-tRNA SYNTHETASE 1 deficiency confers thermosensitive male sterility in rice by affecting reactive oxygen species homeostasis.	Plant Physiol.	196(2)	1014-1028	2024		
55314	39044456	Yoon H., Lim C., Lyu B., Song Q., Park S.Y., Kang K., Cho S.H., Paek N.C.	Rice CHD3/Mi-2 chromatin remodeling factor RFS regulates vascular development and root formation by modulating the transcription of auxin-related genes NAL1 and OsPIN1.	BMB Rep	57(10)	441-446	2024		
55315	39354337	Tanaka R., Kawai T., Kawakatsu T., Tanaka N., Shenton M., Yabe S., Uga Y.	Transcriptome-based prediction for polygenic traits in rice using different gene subsets.	BMC Genomics	25(1)	915	2024		
55316	39089046	Zhang W., Tao J., Chang Y., Wang D., Wu Y., Gu C., Tao W., Wang H., Xie X., Zhang Y.	Cytokinin catabolism and transport are involved in strigolactone-modulated rice tiller bud elongation fueled by phosphate and nitrogen supply.	Plant Physiol. Biochem.	215	108982	2024		
55317	38996044	Fan Y., Chen H., Wang B., Li D., Zhou R., Lian W., Shao G., Wei X., Wu W., Liu Q., Sun L., Zhan X., Cheng S., Zhang Y., Cao L.	DWARF AND LESS TILLERS ON CHROMOSOME 3 promotes tillering in rice by sustaining FLORAL ORGAN NUMBER 1 expression.	Plant Physiol.	196(2)	1064-1079	2024		
55318	39411651	Anshori M.F., Musa Y., Farid M., Jayadi M., Padjung R., Kaimuddin K., Huang Y.C., Casimero M., Bogayong I., Suwarno W.B., Sembiring H., Purwoko B.S., Nur A., Wahyuni W., Wasonga D.O., Seleiman M.F.	A comprehensive multivariate approach for GxE interaction analysis in early maturing rice varieties.	Front Plant Sci	15	1462981	2024		
55319	39351808	Wang Y., Ren Y., Teng X., Wang F., Chen Y., Duan E., Wang X., Pan T., Zhang B., Wan G., Zhang Y., Zhang P., Sun X., Yang W., Zhu Y., Chen Y., Zhao W., Han X., Lei C., Zhu S., Liu S., Wang Y., Wan J.	Functional Diversification of Sec13 Isoforms for Storage Protein Trafficking in Rice Endosperm Cells.	Plant Physiol.			2024		
55320	39368086	Hong Z., Xu H., Shen Y., Liu C., Guo F., Muhammad S., Zhang Y., Niu H., Li S., Zhou W., Wu L.	Bioengineering for robust tolerance against cold and drought stresses via co-overexpressing three Cu-miRNAs in major food crops.	Cell Rep	43(10)	114828	2024		
55321	39439508	Kazemzadeh S., Farrokhi N., Ahmadikhah A., Tabar Heydar K., Gilani A., Askari H., Ingvarsson P.K.	Genome-wide association study and genotypic variation for the major tocopherol content in rice grain.	Front Plant Sci	15	1426321	2024		
55322	39369818	Zhao N., Liu C., Ji C., Jiang X., Zhao J., Qiang L., Jin H.	A multi-omics approach reveals differences in toxicity and mechanisms in rice (Oryza sativa L.) exposed to anatase or rutile TiO2 nanoparticles.	NanoImpact	36	100530	2024		
55323	39384943	Du X., Li P., Fan C., Tian J., Lin Y., Xie J., Cheng J., Fu Y., Jiang D., Yuan M., Yu X., Tsuda K., Li B.	Holliday junction resolvase RuvC targets biofilm eDNA and confers plant resistance to vascular pathogens.	Nat Plants			2024		
55324	39367099	Ali M.A., Nafees M., Alomrani S.O., Li Y., Wang Q., Alshehri M.A., Al-Ghanim KA., Ali S., Li F.	Novel nanocomposite and biochar insights to boost rice growth and alleviation of Cd toxicity.	Sci Rep	14(1)	23158	2024		
55325	39409673	Do V.G., Kim S., Win N.M., Kwon S.I., Kweon H., Yang S., Park J., Do G., Lee Y.	Efficient Regeneration of Transgenic Rice from Embryogenic Callus via <i>Agrobacterium</i>-Mediated Transformation: A Case Study Using <i>GFP</i> and Apple <i>MdFT1</i> Genes.	Plants (Basel)	13(19)		2024		
55326	39379841	Das A.K., Hussain A., Methela N.J., Lee D.S., Lee G.J., Woo Y.J., Yun B.W.	Genome-wide characterization of nitric oxide-induced NBS-LRR genes from Arabidopsis thaliana and their association in monocots and dicots.	BMC Plant Biol.	24(1)	934	2024		
55327	39409674	Abbas H.M.M., Rais U., Sultan H., Tahir A., Bahadur S., Shah A., Iqbal A., Li Y., Khan M.N., Nie L.	Residual Effect of Microbial-Inoculated Biochar with Nitrogen on Rice Growth and Salinity Reduction in Paddy Soil.	Plants (Basel)	13(19)		2024		
55328	39361821	Zhou X.X., Xiao Q., Zhang K., Gao Y., Zhang J., Fang L., Yan B., Li F.	Quantitatively Tracking the Speciation and Dynamics of Selenium Nanoparticles in Rice Plants.	Anal. Chem.	96(42)	16937-16945	2024		
55329	39374096	Catarino B., Andrade L., Cordeiro A.M., Carvalho P., Barros P.M., Bl&#xe1;zquez MA., Saibo N.J.M.	Light and temperature signals are integrated through a phyB-dependent gene regulatory network in rice.	J. Exp. Bot.			2024		
55330	39409055	Zhang D., Hu Y., Tang L., Du Y., Mao R., Sheng X., Liu H., Liu X., Zhao B., Lei D.	ABCG Transporters in the Adaptation of Rice to Salt Stresses.	Int J Mol Sci	25(19)		2024		
55331	39365503	Sriram M., Manonmani S., Gopalakrishnan C., Sheela V., Shanmugam A., Revanna Swamy KM., Suresh R.	Breeding for brown plant hopper resistance in rice: recent updates and future perspectives.	Mol. Biol. Rep.	51(1)	1038	2024		
55332	39367004	Thongsima N., Khunsanit P., Navapiphat S., Henry I.M., Comai L., Buaboocha T.	Sequence-based analysis of the rice CAMTA family: haplotype and network analyses.	Sci Rep	14(1)	23156	2024		
55333	39385076	Ullah J., Gul A., Khan I., Shehzad J., Kausar R., Ahmed M.S., Batool S., Hasan M., Ghorbanpour M., Mustafa G.	Green synthesized iron oxide nanoparticles as a potential regulator of callus growth, plant physiology, antioxidative and microbial contamination in Oryza sativa L.	BMC Plant Biol.	24(1)	939	2024		
55334	39416474	Yuan S., Qin S., Shi Q., Chen P., Tu N., Zhou W., Yi Z.	Effects of different cold-resistant agents and application methods on yield and cold-resistance of machine-transplanted early rice.	Front Plant Sci	15	1422374	2024		
55335	39479540	Cai Q., Zou Y., Zhong N., Jia G.	Effects of nutritional stress on soil fertility and antioxidant enzymes of rice in different growth periods.	Front Plant Sci	15	1471682	2024		
55336	39405970	Chen Y., Ding Z., Cao L., Zheng X., Zu Y., Li Z.	Response of transporter proteins activities to Cd distribution in two wild rice roots.	Ecotoxicol. Environ. Saf.	286	117168	2024		
55337	39401239		Retraction: Optimized Scorpion Polypeptide LMX: A Pest Control Protein Effective against Rice Leaf Folder.	PLoS ONE	19(10)	e0312334	2024		
55338	39424865	Jiang L., Li G., Shao C., Gao K., Ma N., Rao J., Miao X.	Genome-wide exploration of the CONSTANS-like (COL) gene family and its potential role in regulating plant flowering time in foxtail millet (Setaria italica).	Sci Rep	14(1)	24518	2024		
55339	39458879	Siangliw J.L., Ruangsiri M., Theerawitaya C., Cha-Um S., Poncheewin W., Songtoasesakul D., Thunnom B., Ruanjaichon V., Toojinda T.	Contrasting Alleles of <i>OsNRT1.1b</i> Fostering Potential in Improving Nitrogen Use Efficiency in Rice.	Plants (Basel)	13(20)		2024		
55340	39414689	Zhang G., Yang Z., Zhou S., Zhu J., Liu X., Luo J.	Cellulose synthase-like OsCSLD4: a key regulator of agronomic traits, disease resistance, and metabolic indices in rice.	Plant Cell Rep.	43(11)	264	2024		
55341	39401626	Xie L.H., Shao G.N., Sheng Z.H., Hu S.K., Wei X.J., Jiao G.A., Ling-Wang, Tang S.Q., Hu P.S.	Rapid identification of fragrant rice using starch flavor compound via NIR spectroscopy coupled with GC-MS and Badh2 genotyping.	Int. J. Biol. Macromol.	281(Pt 4)	136547	2024		
55342	39425772	Dang X., Xu Q., Li Y., Song S., Hu C., Jing C., Zhang Y., Wang D., Hong D., Jiang J.	GW3, encoding a member of the P450 subfamily, controls grain width by regulating the GA4 content in spikelets of rice (Oryza sativa L.).	Theor. Appl. Genet.	137(11)	251	2024		
55343	39456877	Khunsanit P., Plaimas K., Chadchawan S., Buaboocha T.	Profiling of Key Hub Genes Using a Two-State Weighted Gene Co-Expression Network of 'Jao Khao' Rice under Soil Salinity Stress Based on Time-Series Transcriptome Data.	Int J Mol Sci	25(20)		2024		
55344	39404763	Li X., Chen H., Yang S., Kumar V., Xuan Y.H.	Phytochrome B promotes blast disease resistance and enhances yield in rice.	Plant Physiol.			2024		
55345	39474217	Kanno S., Fujimura S., Takahashi J., Li C., Shinano T., Nakamura S.I., Leonhardt N., Furukawa J.	Rice Na+ absorption mediated by OsHKT2;1 affected Cs+ translocation from root to shoot under low K+ environments.	Front Plant Sci	15	1477223	2024		
55346	39474214	Faisal M., Faizan M., Soysal S., Alatar A.A.	Synergistic application of melatonin and silicon oxide nanoparticles modulates reactive oxygen species generation and the antioxidant defense system: a strategy for cadmium tolerance in rice.	Front Plant Sci	15	1484600	2024		
55347	39457449	Luo H., Lu L., Wang Q., Guo Z., Liu L., He C., Shi J., Dong C., Ma Q., Li J.	Exploring Distribution and Evolution of <i>Pi-ta</i> Haplotypes in Rice Landraces across Different Rice Cultivation Regions in Yunnan.	Genes (Basel)	15(10)		2024		
55348	39412538	Kaushal P., Pati A.M.	Bacillus altitudinis Mediated Lead Bioremediation for Enhanced Growth of Rice Seedlings.	Curr. Microbiol.	81(12)	410	2024		
55349	39456764	Wang X., Wang Y., Yang H., Liu F., Cai Y., Xiao J., Fu Q., Wan P.	Integrative Omics Strategies for Understanding and Combating Brown Planthopper Virulence in Rice Production: A Review.	Int J Mol Sci	25(20)		2024		
55350	39438338	Wang L., Wang R., Cai X., Zheng H., Huang Y., Li Y., Cui M., Lin M., Tang H.	A loss-of-function mutation in OsTZF5 confers sensitivity to low temperature and effects the growth and development in rice.	Plant Mol. Biol.	114(6)	116	2024		
55351	39447627	Pan W., Wang M., Liu Y.Y., Miao A.J.	Direct determination of silicon overestimates the accumulation and translocation of SiO2 nanoparticles in rice seedlings.	Environ. Pollut.	363(Pt 1)	125167	2024		
55352	39455475	Yang Q., Tang X., Wu Y., Zhu W., Zhang T., Zhang Y.	CRISPR-Based Modulation of uORFs in DEP1 and GIF1 for Enhanced Rice Yield Traits.	Rice (N Y)	17(1)	67	2024		
55353	39467745	Li W., Zhu X., Luo H., Peng L., Zhan Y., Ye Y., Wu Y., Tao L., Ma B., Chen X., Liu B.	[Heredity and fine mapping of a yellow leaf and less tillering mutant <i>yllt10</i> in rice].	Sheng Wu Gong Cheng Xue Bao	40(10)	3471-3484	2024		
55354	39451153	Kobayashi A., Suganami M., Yoshida H., Morinaka Y., Watanabe S., Machida Y., Chaya G., Nakaoka F., Sato N., Miura K., Matsuoka M.	How have breeders adapted rice flowering to the growing region?	J Integr Plant Biol			2024		
55355	39440867	Qiao Z., Fu M., Liang W., Zhou S., Han Y., Luo K., Peng C., Wang G., Zhang W., Zhan X.	Effects of Decabromodiphenyl Ethane and Cadmium Coexposure on Their Bioaccumulation, Oxidative Stress, Root Metabolism, and Rhizosphere Soil Microorganisms in a Soil-Rice System.	J. Agric. Food Chem.	72(44)	24246-24259	2024		
55356	39227176	Ishikawa K., Yamamura C., Miyamoto K., Kanda Y., Inoue H., Okada K., Kamakura T., Mori M.	Rice transcription factor DPF regulates stress-induced biosynthesis of diterpenoid phytoalexins.	Biosci. Biotechnol. Biochem.	88(11)	1344-1348	2024		
55357	39498395	Duan F., Wu F., Li Z., Zhang K., Ma Q.	Response of young rice panicles to salt stress: insights based on phenotype and transcriptome analysis.	Front Plant Sci	15	1451469	2024		
55358	39507902	Warwate S.I., Awana M., Thakare S.S., Krishnan V., Kumar S., Bollinedi H., Arora A., Sevanthi A.M., Ray M., Praveen S., Singh A.	Exploring the synergy of enzymes, nutrients, and gene networks in rice starch granule biogenesis.	Front Nutr	11	1448450	2024		
55359	39490941	Sunera, Khan Z., Irshad M., Zakria M., Saqib S., Zaman W.	Evaluating the Efficacy of Endophytic Bacteria in Controlling Rice Sheath Blight: In Vitro and In Vivo Studies.	Microb. Pathog.		107084	2024		
55360	39476691	Zhou M., Li H., Xi L., Shi F., Li X., Wang F., Liu X., Su H., Wei Y.	Influence of rhizospheric symbiotic microorganisms on the behavioural effects of antimony in soil-plant system: Insights from a proteomic perspective.	J. Hazard. Mater.	480	136328	2024		
55361	39471621	Zheng S., Xu C., Zhu H., Huang D., Wang H., Zhang Q., Li X., Zhu Q.	Foliar application of zinc and selenium regulates cell wall fixation, physiological and gene expression to reduce cadmium accumulation in rice grains.	J. Hazard. Mater.	480	136302	2024		
55362	39481760	Jiang H., Cheng W., Chen C., Fang C., Zhan Y., Tao L., Yang Y., Huang X., Wu K., Fu X., Wu Y., Liu B., Ye Y.	Mutation of rice sm1 enhances solid leaf midrib formation and increases methane emissions.	Plant Sci.	350	112312	2024		
55363	39481382	Luo W., Xu Y., Cao J., Guo X., Han J., Zhang Y., Niu Y., Zhang M., Wang Y., Liang G., Qian Q., Ge S., Chong K.	COLD6-OSM1 module senses chilling for cold tolerance via 2',3'-cAMP signaling in rice.	Mol. Cell			2024		
55364	39466674	Chen W., Bai D., Liao Y., Yu Q., Bai L., Pan L.	PfGSTF2 endows resistance to quizalofop-p-ethyl in Polypogon fugax by GSH conjugation.	Plant Biotechnol. J.			2024		
55365	39094478	Pandey S., Divakar S., Singh A.	Genome editing prospects for heat stress tolerance in cereal crops.	Plant Physiol. Biochem.	215	108989	2024		
55366	39354385	Farooq M.S., Majeed A., Ghazy A.H., Fatima H., Uzair M., Ahmed S., Murtaza M., Fiaz S., Khan M.R., Al-Doss AA., Attia K.A.	Partial replacement of inorganic fertilizer with organic inputs for enhanced nitrogen use efficiency, grain yield, and decreased nitrogen losses under rice-based systems of mid-latitudes.	BMC Plant Biol.	24(1)	919	2024		
55367	39464668	Kong C.K.Y., Lee R.S., Hasan K., Wong C.K.F., Teh C.Y.	Proline Priming Enhances Seed Vigour and Biochemical Attributes of Rice (<i>Oryza sativa</i> L.) during Germination.	Tropical Life Sciences Research	35(3)	149-163	2024		
55368	39056538	Dong X., Yang H., Chai Y., Han B., Liu J., Tian L., Cui S., Xiong S., Zhong M., Fu B., Qu L.Q.	Simultaneous knockout of cytosolic and plastidial disproportionating enzymes disrupts grain setting and filling in rice.	Plant Physiol.	196(2)	1391-1406	2024		
55369	39046202	Chen H., Su S., Yang S., Zhao T., Tang P., Luo Q., Zhong Y., Yang J.	Effector MoSDT1 enhances Magnaporthe oryzae virulence and plays a dual role in regulating rice defense.	Plant Physiol.	196(2)	1042-1063	2024		
55370	39445147	Liu X., Hu X., Tu Z., Sun Z., Qin P., Liu Y., Chen X., Li Z., Jiang N., Yang Y.	The roles of <i>Magnaporthe oryzae</i> avirulence effectors involved in blast resistance/susceptibility.	Front Plant Sci	15	1478159	2024		
55371	39367602	Ren J., Li T., Guo M., Zhang Q., Ren S., Wang L., Wu Q., Niu S., Yi K., Ruan W.	A PHR-dependent reciprocal antagonistic interplay between UV response and P-deficiency adaptation in plants.	Plant Commun		101140	2024		
55372	39405685	Liu J., Chen S.B., Fan Z.H., Liu H., Chen Y., Seth C.S., Agathokleous E., Guo T.C., Kang G.Z., Li G.Z.	High-affinity potassium transporter TaHAK1 implicates in cesium tolerance and phytoremediation.	J. Hazard. Mater.	480	136070	2024		
55373	39451539	Mascarenhas M.S., Nascimento F.D.S., Rocha A.J., Ferreira M.D.S., Oliveira WDDS., Morais Lino LS., Mendes T.A.O., Ferreira C.F., Santos-Serejo JAD., Amorim E.P.	Use of CRISPR Technology in Gene Editing for Tolerance to Biotic Factors in Plants: A Systematic Review.	Curr Issues Mol Biol	46(10)	11086-11123	2024		
55374	39408984	Wang Z.Q., Wang Y.F., Xu T., Li X.Y., Zhang S., Chang X.Q., Yang X.L., Meng S., Lv L.	Transcriptomic Analysis of the CNL Gene Family in the Resistant Rice Cultivar IR28 in Response to <i>Ustilaginoidea virens</i> Infection.	Int J Mol Sci	25(19)		2024		
55375	39361138	Upadhyaya G., Sethi V., Modak A., Gangappa S.N.	ALOG/LSHs, a novel class of transcription factors: Evolutionarily conserved regulators of plant growth and development.	J. Exp. Bot.			2024		
55376	39416656	Mansueto L., McNally K.L., Kretzschmar T., Mauleon R.	CannSeek? Yes we Can! An&#xa0;open-source single nucleotide polymorphism database and analysis portal for <i>Cannabis sativa</i>.	GigaByte	2024	gigabyte135	2024		
55377	39395396	Wang P., Cao J., Lu J., Xu X., Wu S., Liu H., Wang X.	Exogenous MgH2-derived hydrogen alleviates cadmium toxicity through m6A RNA methylation in rice.	J. Hazard. Mater.	480	136073	2024		
55378	39458831	Xiao J., Xiong Z., Huang J., Zhang Z., Cai D., Xiong D., Cui K., Peng S., Huang J.	Differences in grain yield and Nitrogen Uptake between Tetraploid and Diploid Rice: The Physiological Mechanisms under Field Conditions.	Plants (Basel)	13(20)		2024		
55379	39392917	Rathore R.S., Mishra M., Pareek A., Singla-Pareek SL.	Grain Lysine enrichment and improved stress tolerance in rice through protein engineering.	J. Exp. Bot.			2024		
55380	39397365	Luo Q., Liu Y.G.	Breeding herbicide-resistant rice (Oryza sativa) using CRISPR/Cas gene editing and other technologies.	Plant Commun		101172	2024		
55381	39401544	Tian W., Peng Z., Zhang X., Zheng Y., Wang Y., Feng B., Li Y., He G., Sang X.	OsMAPKKK&#x3b5; regulates apical spikelet development by adjusting Reactive Oxygen Species accumulates in Oryza sativa.	Plant Sci.	350	112280	2024		
55382	39394572	Liu H., Yao Y., Ma J., Wang S., Li S., Wang W., Yu X., Sun F., Zhang C., Xi Y.	Wheat TaTIFY3B and TaTIFY10A play roles in seed germination and abiotic stress responses in transgenic Arabidopsis and rice.	BMC Plant Biol.	24(1)	951	2024		
55383	39446594	Hasegawa Y., Luo Y., Sato T.	Recent advances in ubiquitin signals regulating plant membrane trafficking.	Plant Cell Physiol.			2024		
55384	39467746	Tang L., Lian J., Zhao B., Shen Z., Zhu Z., Ye Y., Zhang Z., Lu M., Wang Y., Rao Y.	[Mining and analysis of regulatory loci for VB6 content in rice grains].	Sheng Wu Gong Cheng Xue Bao	40(10)	3485-3499	2024		
55385	39443408	Yu Y., Xu X., Hu Y., Ding Y., Chen L.	Indole-3-Acetic Acid (IAA) and Sugar Mediate Endosperm Development in Rice (Oryza sativa L.).	Rice (N Y)	17(1)	66	2024		
55386	39454297	Qi Y., Xie Y., Ge M., Shen W., He Y., Zhang X., Qiao F., Xu X., Qiu Q.S.	Alkaline tolerance in plants: The AT1 gene and beyond.	J. Plant Physiol.	303	154373	2024		
55387	39462135	Liu H., Lu C., Liu X.Q., Zhuo C.J., Luo R.J., Huang Q.T., Tang Z., Zhao C.Q., Guerinot M.L., Salt D.E., Zhao F.J., Huang X.Y.	A chloroplast localized heavy metal-associated domain containing protein regulates grain calcium accumulation in rice.	Nat Commun	15(1)	9265	2024		
55388	39479298	Arya A., Arora S., Hamid F., Kumar S.	PFusionDB: a comprehensive database of plant-specific fusion transcripts.	3 Biotech	14(11)	282	2024		
55389	39470162	Liu Q., Deng L., Weng L., Li J., Li X., Kang W., Duan Y., Xiao G.	Enhances the resistance of rice to lepidopteran pests by fusing the Cry1Ca and Cry2Aa genes with self-cleavage peptide sequence.	Pest Manag. Sci.			2024		
55390	39478453	Zhu S., Tang G., Yang Z., Han R., Deng W., Shen X., Huang R.	Fine mapping of a major QTL, qECQ8, for rice taste quality.	BMC Plant Biol.	24(1)	1034	2024		
55391	39041489	Shen J., Zhang L., Wang H., Guo J., Li Y., Tan Y., Shu Q., Qian Q., Yu H., Chen Y., Song S.	The phosphatidylethanolamine-binding proteins OsMFT1 and OsMFT2 regulate seed dormancy in rice.	Plant Cell	36(9)	3857-3874	2024		
55392	38976557	Xuan H., Li Y., Liu Y., Zhao J., Chen J., Shi N., Zhou Y., Pi L., Li S., Xu G., Yang H.	The H1/H5 domain contributes to OsTRBF2 phase separation and gene repression during rice development.	Plant Cell	36(9)	3787-3808	2024		
55393	39278376	Li G., Gao Q., Li B., Wang J., Cheng B., Wang D., Gao H., Xu W., Wang W., Zhang W., Zhang G., Qi Z., Ji J., Liu Y.	Comparative transcriptome profiling reveals the key genes and molecular mechanisms involved in rice under blast infection.	Gene	933	148942	2025		
55394	39284757	Chen C., Cheng W., Jiang H., Fang C., Li W., Peng L., Tao L., Zhan Y., Wu Y., Huang X., Liu B., Ye Y.	Mutation of KAP, which encodes a keratin-associated protein, affects grain size and yield production in rice.	Physiol Plant	176(5)	e14528	2024		
55395	39389922	Kim J.H., Cho A.Y., Lim S.D., Jang C.S.	Mutation of a RING E3 ligase, OsDIRH2, enhances drought tolerance in rice with low stomata density.	Physiol Plant	176(5)	e14565	2024		
55396	39279860	Feng Y., Weers T., Peters R.J.	Double-barreled defense: dual <i>ent</i>-miltiradiene synthases in most rice cultivars.	Abiotech	5(3)	375-380	2024		
55397	39273977	Chen Y., Zhang R., Wang R., Li J., Wu B., Zhang H., Xiao G.	Overexpression of <i>OsRbohH</i> Enhances Heat and drought tolerance through ROS Homeostasis and ABA Mediated Pathways in Rice (<i>Oryza sativa</i> L.).	Plants (Basel)	13(17)		2024		
55398	39238330	Zhao X.Y., Wang H.Q., Shi W., Zhang W.W., Zhao F.J.	The Respiratory Burst Oxidase Homologue OsRBOHE is crucial for root hair formation, drought resistance and tillering in rice.	Plant Cell Environ.			2024		
55399	39075808	Zhang H., Chi Y., Chen S., Lv X., Jia D., Chen Q., Wei T.	Scavenging H2O2 of plant host by saliva CATALASE of leafhopper vector benefits viral transmission.	New Phytol.	243(6)	2368-2384	2024		
55400	39253960	Zhu C., Lin Z., Liu Y., Li H., Di X., Li T., Wang J., Gao Z.	A Bamboo HD-Zip Transcription Factor PeHDZ72 Conferred drought tolerance by Promoting Sugar and Water Transport.	Plant Cell Environ.			2024		
55401	39265646	Luo B., Zhang X., Wang F., Wang Y., Wu W., Lin C., Rao L., Wang Q.	Development of a double-antibody sandwich ELISA for quantification of mutated EPSPS gene expression in rice.	Anal. Biochem.	696	115669	2024		
55402	39244093	Wagh S.G., Bhor S.A., Miyao A., Hirochika H., Toriba T., Hirano H.Y., Kobayashi K., Yaeno T., Nishiguchi M.	Synergy between virus and three kingdom pathogens, fungus, bacterium and virus is lost in rice mutant lines of OsRDR1/6.	Plant Sci.	349	112244	2024		
55403	39237771	Zeng X., Fan K., Shi Y., Chen R., Liu W., Wang X., Ye G., Lin W., Li Z.	OsSPL11 positively regulates grain size.by activating the expression of GW5L in rice.	Plant Cell Rep.	43(9)	228	2024		
55404	39290739	Zhou H., Meng F., Jiang W., Lu X., Zhang R., Huang A., Wu K., Deng P., Wang Y., Zhao H., Du Y., Huo J., Du X., Feng N., Zheng D.	Potassium indole-3-butyric acid affects rice's adaptability to salt stress by regulating carbon metabolism, transcription factor genes expression, and biosynthesis of secondary metabolites.	Front Plant Sci	15	1416936	2024		
55405	39231315	Su X.N., Li C.Y., Liu X.S., Zhang Y.P.	Brassinosteroids Confer Resistance to Isoproturon through OsBZR4-Mediated Degradation Genes in Rice (<i>Oryza sativa</i> L.).	J. Agric. Food Chem.	72(37)	20646-20657	2024		
55406	39219038	Qin C., Fan X., Fang Q., Yu H., Ni L., Jiang M.	Abscisic acid-induced H2O2 production positively regulates the activity of SAPK8/9/10 through oxidation of the type one protein phosphatase OsPP47.	New Phytol.	244(4)	1345-1361	2024		
55407	38953747	Wang H., Bi Y., Yan Y., Yuan X., Gao Y., Noman M., Li D., Song F.	A NAC transcription factor MNAC3-centered regulatory network negatively modulates rice immunity against blast disease.	J Integr Plant Biol	66(9)	2017-2041	2024		
55408	39273675	Tian Q., Yu T., Dong M., Hu Y., Chen X., Xue Y., Fang Y., Zhang J., Zhang X., Xue D.	Identification and Characterization of <i>Shaker</i> Potassium Channel Gene Family and Response to Salt and Chilling Stress in Rice.	Int J Mol Sci	25(17)		2024	KAT2,KAT4,AKT2,NKT5,AKT1,GORK ,KAT3,AKT3	OsKAT2,OsKAT4,OsAKT2, ZMK2, OsZMK2, OsK3.1, K3.1,OsNKT5, OsKAT3, KAT3,OsAKT1, Os-AKT1,OsGORK, OsK5.2, K5.2, KOR1, OsKOR1, OsSKOR, SKOR,OsKAT3, OsKAT1, KAT1,OsSTA191, OsAKT3
55409	39251763	Kuai P., Lin N., Ye M., Ye M., Chen L., Chen S., Zu H., Hu L., Gatehouse A.M.R., Lou Y.	Identification and knockout of a herbivore susceptibility gene enhances planthopper resistance and increases rice yield.	Nat Food	5(10)	846-859	2024		
55410	39256395	Duan Y., Wang Z., Fang Y., Pei Z., Hu H., Xu Q., Liu H., Chen X., Luo C., Huang J., Zheng L., Chen X.	A secreted fungal laccase targets the receptor kinase OsSRF3 to inhibit OsBAK1-OsSRF3-mediated immunity in rice.	Nat Commun	15(1)	7891	2024	SG2,SRF3	OsSERK1, SERK1, OsBAK1, BAK1, OsSERK1/OsBAK1, OsBISERK1, BISERK1, OsSerk1, OsBAK1-1, 08SG2/OsBAK1, 08SG2, OsSG2,OsSRF3
55411	39337250	Wang X., Chen Z., Guo J., Han X., Ji X., Ke M., Yu F., Yang P.	<i>OsMBF1a</i> Facilitates Seed Germination by Regulating Biosynthesis of Gibberellic Acid and Abscisic Acid in Rice.	Int J Mol Sci	25(18)		2024		
55412	39251844	Yan B., Liu C., Sun J., Mao Y., Zhou C., Li J., Liu W., Li S., Yan W., Fu C., Qin P., Fu X., Zhao X., Song X., Nie J., Gao F., Yang Y., Chen Y., Cao X.	Impaired 2',3'-cyclic phosphate tRNA repair causes thermo-sensitive genic male sterility in rice.	Cell Res.	34(11)	763-775	2024		
55413	39273980	Huang Y., Liu J., Cheng L., Xu D., Liu S., Hu H., Ling Y., Yang R., Zhang Y.	Genome-Wide Analysis of the Histone Modification Gene (<i>HM</i>) Family and Expression Investigation during Anther Development in Rice (<i>Oryza sativa</i> L.).	Plants (Basel)	13(17)		2024		
55414	39290348	Palaniswamy R., Kambale R., Mohanavel V., Rajagopalan V.R., Manickam S., Muthurajan R.	Identifying molecular targets for modulating carotenoid accumulation in rice grains.	Biochem Biophys Rep	40	101815	2024		
55415	39251423	Mehla S., Singh Y., Kumar U., Balyan P., Singh K.P., Dhankher O.P.	Overexpression of rice lectin receptor-like kinase, OsLec-RLK, confers salinity stress tolerance and increases seed yield in pigeon pea (Cajanus cajan (L.) Millsp.).	Plant Cell Rep.	43(10)	230	2024		
55416	39242590	Pal A.K., Gandhivel V.H., Nambiar A.B., Shivaprasad P.V.	Upstream regulator of genomic imprinting in rice endosperm is a small RNA-associated chromatin remodeler.	Nat Commun	15(1)	7807	2024	CTD2,CHR742	OsCTD2, CHR740, OsCHR740, OsCLSY3, CLSY3, OsFEL1, FEL1,OsCHR742, OsCLSY4, CLSY4, OsFEM2, FEM2
55417	39440705	Park J.R., Seo J., Lee C.M., Jeong O.Y., Jin M., Park S., Park H.S.	SNP-based QTL mapping and identification of panicle structure-related genes in rice.	Physiol Plant	176(5)	e14588	2024		
55418	39248638	Chen S.Y., Zhang Z.S., Zhang Z.Y., Sun L.Q., Fan S.J., Zhang G.H., Wu J., Xia J.Q., Yu J., Hou S.W., Qin P., Li S.G., Xiang C.B.	Loss of OsMATE6 Function Enhances Drought Resistance Without Yield Penalty by Regulating Stomatal Closure in Rice.	Plant Cell Environ.			2024		
55419	39218839	Gao Y., Zhao X., Liu X., Liu C., Zhang K., Zhang X., Zhou J., Dong G., Wang Y., Huang J., Yang Z., Zhou Y., Yao Y.	OsRAV1 Regulates Seed Vigor and salt tolerance During Germination in Rice.	Rice (N Y)	17(1)	56	2024	AP2/EREBP127	AP2/EREBP#127, OsRAV11, RAV11, OsRAV1, RAV1
55420	39228126	Han S., Wang Y., Li Y., Zhu R., Gu Y., Li J., Guo H., Ye W., Nabi H.G., Yang T., Wang Y., Liu P., Duan J., Sun X., Zhang Z., Zhang H., Li Z., Li J.	The OsNAC41-RoLe1-OsAGAP module promotes root development and drought resistance in upland rice.	Mol Plant	17(10)	1573-1593	2024		
55421	39223425	Li M., Feng L., Ye H., Li M., Jin J., Tao L.Z., Liu H.	OsRopGEF10 Attenuates Cytokinin Signaling to Regulate Panicle Development and grain yield in Rice.	Rice (N Y)	17(1)	57	2024	RAC3,AHP2,BGL,AHP1	OsRac3,OHP2, HPt, OsAHP2 Hpt3, Ohp2, OsHP1, HP1, OsHpt3, OsHP01,bgl, OsRopGEF10, Os RopGEF10, RopGEF10, OsGEF21, GEF21, SPD25, OsSPD25,OHP1, HPt, OsAHP1, Hpt2, Ohp1, OsHP2, HP2, OsHpt2, OsHPt2, OsHP02
55422	39249660	Zhu L., Shen Y., Dai Z., Miao X., Shi Z.	G&#x3b3;-protein GS3 Function in Tight Genetic Relation with OsmiR396/GS2 to Regulate grain size.in Rice.	Rice (N Y)	17(1)	59	2024	LK3,GS2,GRF8	lk3(t), lk3(t)*, SG3, GS3, SG3-GS3, OsGW3, OsGS3, RGG3/GS3/Mi/OsGGC1, RGG3, Mi, OsGGC1, GGC1, OsSYL3, SYL3, TT2, OsTT2,OsGRF4, GRF4, GS2/OsGRF4, PT2, GLW2, GS2/GL2, LGS1, OsLGS1,OsGRF8
55423	39265046	Huang Y., Yue E., Lian G., Lu J., Ran L., Ma S., Wang K., Bai Y., Han N., Bian H., Guo F.	Novel mechanism of MicroRNA408 in callus formation from rice mature embryo.	Plant J.	120(2)	769-787	2024		
55424	39271542	Li J., Chen Y., Zhang R., Wang R., Wu B., Zhang H., Xiao G.	OsWRKY70 Plays Opposite Roles in Blast Resistance and Cold Stress Tolerance in Rice.	Rice (N Y)	17(1)	61	2024	LTI6B,POX8.1,BHLH6,_,BHLH2,POX22.3,PR10A,WRKY70	OsLti6b, Lti6b, OsLTI6B, OsRCI2-6,POX8.1, prx110, POX8,OsbHLH006, bHLH006, OsbHLH6, bHLH6, RERJ1, OsRERJ1, bHLH35,OsPR1, OsPR1a, PR1a, PR1, OsPR1b, PR1b,OsbHLH002, bHLH002, OsbHLH2, bHLH2, OsICE1, ICE1, OsbHLH002/OsICE1,POX22.3, OSPER, OsPOX, POX, Pir3, prx111, POX22, OsPOX1, POX1, OsPOX22.3, OsPR9, PR9,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsWRKY70
55425	39269680	Zhang R., Zhang H., Li L., Li Y., Xie K., Chen J., Sun Z.	Editing of OsPsaL gene improves both yield and antiviral immunity in rice.	Plant Biotechnol. J.			2024		
55426	39337349	Xue B., Liang Z., Liu Y., Li D., Cao P., Liu C.	Comparative Analysis of Casparian Strip Membrane Domain Protein Family in <i>Oryza sativa</i> (L.) and <i>Arabidopsis thaliana</i> (L.).	Int J Mol Sci	25(18)		2024		
55427	39337489	Shad M.A., Li X., Rao M.J., Luo Z., Li X., Ali A., Wang L.	Exploring Lignin Biosynthesis Genes in Rice: Evolution, Function, and Expression.	Int J Mol Sci	25(18)		2024		
55428	39259231	Thenappan D.P., Pandey R., Hada A., Jaiswal D.K., Chinnusamy V., Bhattacharya R., Annapurna K.	Physiological Basis of Plant Growth Promotion in Rice by Rhizosphere and Endosphere Associated Streptomyces Isolates from India.	Rice (N Y)	17(1)	60	2024	YUCCA3,RAU1,YUCCA1,IAA1,GID1,IPT3,SD1,IPT9	OsYUCCA3, OsYUC3, YUC3,OsLAX1, OsRAU1, OsAUX1, LAX1, AUX1,OsYUCCA1, OsYUC1, YUC1,OsIAA1, OsIAA4,gid1, OsGID1, Thl, Os GID1,OsIPT3,sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2, OsPHQ1, OsPHq1, PHq1,OsIPT9, OsIPT5, IPT5
55429	39271180	Zhang X., Kim Y.J., Tan Q., Jung K.H., Liang W.	A leucine-rich-repeat receptor-like kinase regulates pollen aperture formation in rice.	Plant Physiol.			2024		
55430	39277049	Xu S., Zhang Y., Cai H., He Y., Chen L., Zhang G., Chen R., Gu C., Teng X., Duan E., Jiang L., Ren Y., Wang Y., Dong H., Wan J.	Lysine 98 in NAC20/NAC26 transcription factors: a key regulator of starch and protein synthesis in rice endosperm.	Plant Sci.	349	112258	2024		
55431	39294464	Chen Y., He Y., Pan Y., Wen Y., Zhu L., Gao J., Chen W., Jiang D.	Involvement of the Metallothionein gene OsMT2b in Drought and Cadmium Ions Stress in Rice.	Rice (N Y)	17(1)	63	2024		
55432	39337301	Zhang J., Meng D., Li J., Bao Y., Yu P., Dou G., Guo J., Tang C., Lv J., Wang X., Wang X., Wu F., Shi Y.	Analysis of the Rice Raffinose Synthase (OsRS) Gene Family and Haplotype Diversity.	Int J Mol Sci	25(18)		2024	AGA1,_,AGA3,RS3,RS5,RS2	Osh69, h69, OsAGA1, OsRS6, RS6,Rafs, OsRS2, RS2,OsAGA3, OsRS4, RS4,Rafs, OsRS3,OsRS5, OsRS1, RS1,OsRS2, OsRS5, RS5
55433	39345982	Hu Z., He D., Peng X., Yang J.	OsCBL1 mediates rice response to local nitrate signaling: insights into regulatory networks and gene expression.	Front Plant Sci	15	1418119	2024		
55434	39288070	Yang Z., Bai T., E Z., Niu B., Chen C.	OsNF-YB7 inactivates OsGLK1 to inhibit chlorophyll biosynthesis in rice embryo.	Elife	13		2024		
55435	39305015	Huang Y., Meng X., Rao Y., Xie Y., Sun T., Chen W., Wei X., Xiong J., Yu H., Li J., Wang K.	OsWUS-driven synthetic apomixis in hybrid rice.	Plant Commun		101136	2024		
55436	39285527	Singh D., Verma N., Rengasamy B., Banerjee G., Sinha A.K.	The small RNA biogenesis in rice is regulated by MAP kinase-mediated OsCDKD phosphorylation.	New Phytol.	244(4)	1482-1497	2024		
55437	39279451	Cheng M., Yuan H., Wang R., Fan F., Si F., Luo X., Liu W., Li S.	OsFAD1-OsMYBR22 modulates clustered spikelet through regulating BRD3 in rice.	J Integr Plant Biol			2024		
55438	39345976	Xiang X., Liu S., He Y., Li D., Ofori A.D., Ghani Kandhro A., Zheng T., Yi X., Li P., Huang F., Zheng A.	Genome wide association study reveals new genes for resistance to striped stem borer in rice (<i>Oryza sativa</i> L.).	Front Plant Sci	15	1466857	2024		
55439	39257305	Mao X., Yu H., Xue J., Zhang L., Zhu Q., Lv S., Feng Y., Jiang L., Zhang J., Sun B., Yu Y., Li C., Ma Y., Liu Q.	OsRHS Negatively Regulates Rice heat tolerance at the Flowering Stage by Interacting With the HSP protein cHSP70-4.	Plant Cell Environ.			2024		
55440	39328527	Li N., Miao J., Li Y., Ji F., Yang M., Dai K., Zhou Z., Hu D., Guo H., Fang H., Wang H., Wang M., Yang J.	Comparative transcriptome analysis and meta-QTLs mapping reveal the regulatory mechanism of cold tolerance in rice at the budding stage.	Heliyon	10(18)	e37933	2024		
55441	39339542	Madan B., Raghuram N.	Phenotypic, Physiological, and Gene Expression Analysis for Nitrogen and Phosphorus Use Efficienies in Three Popular Genotypes of Rice (<i>Oryza sativa</i> Indica).	Plants (Basel)	13(18)		2024		
55442	39299420	Zhang R., Chen X., Wang Y., Hu X., Zhu Q., Yang L., Zhou M.	Genome-wide identification of hormone biosynthetic and metabolism genes in the 2OGD family of tobacco and JOX genes silencing enhances drought tolerance in plants.	Int. J. Biol. Macromol.	280(Pt 2)	135731	2024		
55443	39318349	Yang Y., Zhou Z., Liu T., Tan Q., Chen L., Wang J., Qiu Z., Ling X., Chen T., Yang X., Liu Q., Guo D., Zhang B.	Multisite Mutagenesis of 4-Hydroxyphenylpyruvate Dioxygenase (HPPD) Enhances Rice Resistance to HPPD Inhibitors and Its Carotenoid Contents.	J. Agric. Food Chem.	72(40)	22063-22072	2024		
55444	39317783	Khare T., Seth C.S., Kumar V.	Sodium stress-induced oxidative damage and antioxidant responses during grain filling in Indica rice.	Plant Cell Rep.	43(10)	239	2024		
55445	39321878	Chen J., Wen Y., Pan Y., He Y., Gong X., Yang W., Chen W., Zhou F., Jiang D.	Analysis of the role of the rice metallothionein gene OsMT2b in grain size regulation.	Plant Sci.	349	112272	2024		
55446	39321183	Li C., Gong B.Q., Luo S., Wang T., Long R., Jiang X., Deng Y.Z., Li J.F.	Engineering a conserved immune coreceptor into a primed state enhances fungal resistance in crops without growth penalty.	Plant Physiol.			2024		
55447	39312475	Tu B., Zhang T., Liu P., Yang W., Zheng L., Dai Y., Wang H., Lin S., Zhang Z., Zheng X., Yuan M., Chen Y., Zhu X., Yuan H., Li T., Xiong J., Zhong Z., Chen W., Ma B., Qin P., Wang Y., Li S.	The LCG1-OsBP5/OsEBP89-Wx module regulates the grain chalkiness and taste quality in rice.	Plant Biotechnol. J.			2024		
55448	39323026	He D.Y., Liang Q.Y., Xiang C.B., Xia J.Q.	Loss of OsSPL8 Function Confers Improved Resistance to Glufosinate and Abiotic Stresses in Rice.	Plant Cell Environ.			2024		
55449	39305212	Li C., Wu X., Wang P., Wang H., Wang L., Sun F., Lu C., Hao H., Chu C., Jing H.C.	Genome-wide association study of image-based trait reveals the genetic architecture of dark-induced leaf senescence in rice.	J. Exp. Bot.			2024		
55450	39408594	Dai H., Ai H., Wang Y., Shi J., Ren L., Li J., Tao Y., Xu Z., Zheng J.	Molecular Characteristics and Expression Patterns of Carotenoid Cleavage Oxygenase Family Genes in Rice (<i>Oryza sativa</i> L.).	Int J Mol Sci	25(19)		2024	ZAS,NCED1,NCED1,NCED2,CCD4B,CCD1,NCED2,D17,NCED2A,CCD8D,D10,ZAS-L2,NCED3,CCD8A	OsZAS, OsCCD8e, CCD8e ,OsNCED1, OsCCD4a, CCD4a,OSNCED1, OsNCED-1, OsNCED3, OsNced3, NCED3, OsNCED9, NCED9,OsNCED2, OsNced2, OsCCD4b, CCD4b, OsCCD4c, CCD4c,OsCCD4b, CCD4b ,OsCCD1,OSNCED2, OsNCED2, OsNCED5, NCED5,d17(t), dwf14, d17, htd1, OsCCD7, CCD7, D17/HTD1, HTD1, OsHTD1, OsD17,OsNCED2a, NCED2a ,OsCCD8d, ZAS-L1, OsZAS-L1, OsZAS1b, ZAS1b, OsCCD8c, CCD8c ,d10(d15,d16), d16, d15, dwf9, d10, OsCCD8b, OsCCD8, CCD8, OsD10,OsZAS-L2, OsZAS1c, ZAS1c, OsCCD8d, CCD8d ,OSNCED3, OsNCED-3, OsNCED3, OsNCED3a, NCED3a, OsNCED4, NCED4, OsNECD2, OsNCED2b, NCED2b ,OsCCD8a, OsCCD8c, CCD8a, CCD8c
55451	39321876	Hu B., Shen E., Zhou F., Sun B., Wang X., Zhou F., Lin Y.	An OsMESL mutant delayed rice leaf senescence through inhibiting cell death by OsBI-1.	Plant Sci.	349	112271	2024		
55452	39333318	Sun J.Y., Zhou Z.R., Wang Y.Q., Zhu D.Y., Ma D.R.	OsHRZ1 negatively regulates rice resistant to Magnaporthe oryzae infection by targeting OsVOZ2.	Transgenic Res.			2024		
55453	39331521	L&#xfc; S., Yu X., Wu X., Hu Q., Zhu X., Wu M., Hu Q., Zhao S., Hu J., Wu J., Zhang S.	The microRNA399d-PHOSPHATE2 module alters rice sensitivity to rice ragged stunt virus by manipulating phosphate uptake.	Plant Physiol.			2024		
55454	39340817	Qiu C.L., Li W., Wang L.N., Wang S.C., Falert S., Wang C., Yu S.Y., Abdelkhalek S.T., Lu J., Lin Y.J., Wang M.Q.	Limonene enhances rice plant resistance to a piercing-sucking herbivore and rice pathogens.	Plant Biotechnol. J.			2024		
55455	39350172	Liu T., Liu Z., Fan J., Yuan Y., Liu H., Xian W., Xiang S., Yang X., Liu Y., Liu S., Zhang M., Jiao Y., Cheng S., Doyle J.J., Xie F., Li J., Tian Z.	Loss of Lateral suppressor gene is associated with evolution of root nodule symbiosis in Leguminosae.	Genome Biol.	25(1)	250	2024		
55456	39341852	Dong M., Wu C., Lian L., Shi L., Xie Z., Zhang J., Jiang Z.	A time-course transcriptomic analysis reveals the key responses of a resistant rice cultivar to brown planthopper infestation.	Sci Rep	14(1)	22455	2024		
55457	39342533	Xin W., Chen N., Wang J., Liu Y., Sun Y., Han B., Wang X., Liu Z., Liu H., Zheng H., Yang L., Zou D., Wang J.	Candidate gene analysis of rice grain shape based on genome-wide association study.	Theor. Appl. Genet.	137(10)	241	2024		
55458	39408894	Wang J., Ma Z., Fu D., Wu Y., Zhou Z., Li C., Shen J.	Identification, Cloning, and Characterization of Two Acupuncture-Injury-Inducing Promoters in Rice.	Int J Mol Sci	25(19)		2024		
55459	39263271	Tan Q., Gan Z., Xiong L., Shao L., Yang W., Luan X., Chen G., Li F., Ni Y., Zhu H., Liu G., Bu S., Wang S., Zhang G.	Four QTLs control stigma exsertion rate by changing stigma size in rice.	Mol. Breed.	44(9)	59	2024		
55460	39290202	Zheng Y., Li M., Sun P., Gao G., Zhang Q., Li Y., Lou G., Wu B., He Y.	QTL detection for grain shape and fine mapping of two novel locus <i>qGL4</i> and <i>qGL6&#xa0;in rice</i>.	Mol. Breed.	44(9)	62	2024		
55461	39222021	Huang H., Yamaji N., Huang S., Ma J.F.	Uptake and Accumulation of Cobalt Is Mediated by OsNramp5 in Rice.	Plant Cell Environ.			2024		
55462	39273936	Jin W., Li L., He W., Wei Z.	Application of Silica Nanoparticles Improved the Growth, Yield, and Grain Quality of Two Salt-Tolerant Rice Varieties under Saline Irrigation.	Plants (Basel)	13(17)		2024		
55463	39290730	Ali M.A., Nafees M., Waseem M., Alomrani S.O., Al-Ghanim KA., Alshehri M.A., Zheng H., Ali S., Li F.	Modulation of Cd carriers by innovative nanocomposite (Ca+Mg) and Cd-resistance microbes (<i>Bacillus pumilus</i>): a mechanistic approach to enhance growth and yield of rice (<i>Oryza sativa</i> L.).	Front Plant Sci	15	1387187	2024		
55464	39228011	Keerthi I., Shukla V., Kalluru S., Mohammad L.A., Kumari P.L., Ramireddy E., Vemireddy L.R.	Prioritization of candidate genes for major QTLs governing yield traits employing integrated multi-omics approach in rice (Oryza sativa L.).	Brief Funct Genomics			2024		
55465	39273959	Debnath A., Sumpi H., Lap B., Bhutia K.L., Behera A., Tyagi W., Rai M.	Multi-Population Analysis for Leaf and Neck Blast Reveals Novel Source of Neck Blast Resistance in Rice.	Plants (Basel)	13(17)		2024		
55466	39221966	Zhang S., Li S., Fang Y., Liu M., Wu L., Wang J., Pan L.	Glycosyltransferase genes are associated with resistance to cyhalofop-butyl in a Chinese Echinochloa crus-galli population.	Pest Manag. Sci.			2024		
55467	39225765	AlHusnain L., AlKahtani M.D.F., Attia K.A., Sanaullah T., Elsharnoby D.E.	Application of CRISPR/Cas9 system to knock out GluB gene for developing low glutelin rice mutant.	Botanical Studies	65(1)	27	2024		
55468	39232292	Xu Y., Lambers H., Feng J., Tu Y., Peng Z., Huang J.	The role of arbuscular mycorrhizal fungi in micronutrient homeostasis and cadmium uptake and transfer in rice under different flooding intensities.	Ecotoxicol. Environ. Saf.	284	116978	2024		
55469	39251768	Ganguly S., Nimitha K., Saha S., Sinha Mahapatra N., Bhattacharya K., Kundu R., Ganguly S., Sen P., Saha A.K., Purkayastha S., Bhattacharyya P.K., Biswas T., Bhattacharyya S.	Identification and analysis of low light responsive yield enhancing QTLs in rice.	Sci Rep	14(1)	21011	2024		
55470	39240713	Chen Z., Xu Q., Wang J., Zhao H., Yue Y., Liu B., Xiong L., Zhao Y., Zhou D.X.	A histone deacetylase confers plant tolerance to heat stress by controlling protein lysine deacetylation and stress granule formation in rice.	Cell Rep	43(9)	114642	2024		
55471	39235125	Liu Z., Zhang J., Cai Y., Wang H., Luo M., Li J., Yu H., Meng X., Cao Y.	Improving Seed Shattering Resistance in Wild <i>O. alta</i> Rice with Mesoporous Silica Nanoparticle Delivery Systems.	Nano Lett.	24(38)	11823-11830	2024		
55472	39223419	Wu M., Wang Y., Zhang S., Xiang Y.	A LBD transcription factor from moso bamboo, PheLBD12, regulates plant height in transgenic rice.	Plant Mol. Biol.	114(5)	95	2024		
55473	39249562	Tao Z., Miao X., Shi Z.	Correction: HD-ZIP IV Gene ROC1 Regulates Leaf Rolling and Drought Response Through Formation of Heterodimers with ROC5 and ROC8 in Rice.	Rice (N Y)	17(1)	58	2024		
55474	39245936	Yan Y., Wang H., Bi Y., Song F.	Rice E3 ubiquitin ligases: From key modulators of host immunity to potential breeding applications.	Plant Commun		101128	2024		
55475	39242482	Yan X., Zhou W., Huang X., Ouyang J., Li S., Gao J., Wang X.	RAL6 encodes a seed allergenic protein that positively regulates grain weight and seed germination.	J. Plant Res.	137(6)	1105-1114	2024		
55476	39336773	Yan Z., Deng R., Tang H., Zhu S.	Genetic Diversity and Divergence between Southern Japonica and Northern Japonica Rice Varieties in China.	Genes (Basel)	15(9)		2024		
55477	39276756	Xiao T., ShangGuan X., Wang Y., Tian Z., Peng K., Shen Z., Hu Z., Xia Y.	The germin-like protein OsGLP8-7 is involved in lignin synthesis for acclimation to copper toxicity in rice.	J. Plant Physiol.	303	154335	2024		
55478	39274001	Wang C., Yang H., Liu Z., Bai L., Wang L., Zhou S.	Multiomics Analysis of the Mechanism by Which Gibberellin Alleviates S-Metolachlor Toxicity in Rice Seedlings.	Plants (Basel)	13(17)		2024		
55479	39274005	Zhang H., Huang D.R., Shen Y., Niu X.J., Fan Y.Y., Zhang Z.H., Zhuang J.Y., Zhu Y.J.	<i>GL5.2</i>, a Quantitative Trait Locus for Rice grain shape, Encodes a RING-Type E3 Ubiquitin Ligase.	Plants (Basel)	13(17)		2024		
55480	39344294	Peng M., Gan F., Pan C., Lin X., Lin F., Ren Y., Na S., Zhu X., Tang W., Wu Z., Fan X., Chen K.	Expression of AtNF-YB1 activates early flowering, showing potential in breeding hybrid rice.	Physiol Plant	176(5)	e14538	2024		
55481	39246623	Chen J., Li S., Zhou L., Zha W., Xu H., Liu K.	Rapid breeding of an early maturing, high-quality, and high-y.ielding rice cultivar using marker&#x2011;assisted selection coupled with optimized anther culture.	Mol. Breed.	44(9)	58	2024		
55482	39254868	Cheng X., Zhou G., Chen W., Tan L., Long Q., Cui F., Tan L., Zou G., Tan Y.	Current status of molecular rice breeding for durable and broad-spectrum resistance to major diseases and insect pests.	Theor. Appl. Genet.	137(10)	219	2024		
55483	39400350	Yan X., Si F., Zhu D., Chen Q., Hu Z., Wang T., Ying S., Tang Y., Yang J., Ding X., Li Y., Liu Y., Wang Z., Peng X.	Improving photosynthetic efficiency of rice via over-expressing a ferredoxin-like protein gene from Methanothermobacter thermautotrophicus.	Physiol Plant	176(5)	e14571	2024		
55484	39229864	Lan F., Zou X., Guo B., Zhou X., He D., Zhang Z., Luo J.S., Dong C.	Effect of pH on growth and Cd accumulation in different rice varieties under hydroponics.	Plant Signal Behav	19(1)	2399429	2024		
55485	39284792	Wang Q., Wang H., Liu Q., Zhu T., Xu H., Ren H., Yang R., Wu L., Zhang Q., Ke J., You C., He H.	Moderate alternate wetting and drying irrigation enhances drought-resistance abilities by improving structural mesophyll conductance of water-saving and drought-resistant rice under severe drought.	Physiol Plant	176(5)	e14518	2024		
55486	39218986	Shi H., Yin J., Zhao Z., Yu H., Yi H., Xu L., Tong H., He M., Zhu X., Lu X., Xiong Q., Li W., Tang Y., Hou Q., Song L., Wang L., Chen X., Sun C., Li T., Fan J., Li Y., Qin P., Wang W.M., Li S., Chen X., Li J., Wang J.	Fine-tuning of IPA1 transactivation activity by E3 ligase IPI7-mediated non-proteolytic K29-ubiquitination during Magnaporthe oryzae infection.	Nat Commun	15(1)	7608	2024	WFP,WRKY45,APIP6	OsSPL14, SPL14, IPA1, WFP/IPA1, OsSPL14/WFP/IPA1, OsIPA1,  IPA1/OsSPL14,OsWRKY45, OsWRKY45-1, OsWRKY45-2, WRKY45-1, WRKY45-2,OsAPIP6,  OsRING382, RING382, IPI7, OsIPI7
55487	39283979	Zhou Y., Li Y., You H., Chen J., Wang B., Wen M., Zhang Y., Tang D., Shen Y., Yu H., Cheng Z.	Kinesin-1-like protein pss1 is essential for full-length homologous pairing and synapsis in rice meiosis.	Plant J.	120(3)	928-940	2024		
55488	39261328	Sunani S.K., Koti P.S., Sunitha N.C., Choudhary M., Jeevan B., Anilkumar C., Raghu S., Gadratagi B.G., Bag M.K., Acharya L.K., Ram D., Bashyal B.M., Das Mohapatra S.	Ustilaginoidea virens, an emerging pathogen of rice: the dynamic interplay between the pathogen virulence strategies and host defense.	Planta	260(4)	92	2024		
55489	39363928	Du X., Du Y., Feng N., Zheng D., Zhou H., Huo J.	Exogenous Uniconazole promotes physiological metabolism and grain yield of rice under salt stress.	Front Plant Sci	15	1459121	2024		
55490	39294143	Xiong D., Wang J., Wang R., Wang Y., Li Y., Sun G., Yao S.	A point mutation in VIG1 boosts development and chilling tolerance in rice.	Nat Commun	15(1)	8212	2024		
55491	39316915	Di D.W., Li T.T., Yu Z.L., Cheng J., Wang M., Liu C.F., Wang Y., Kronzucker H.J., Yu M., Shi W.	Ammonium mitigates cadmium toxicity by activating the bZIP20-APX2/CATA transcriptional module in rice seedlings in an ABA-dependent manner.	J. Hazard. Mater.	480	135874	2024		
55492	39329965	Song J., Tang L., Cui Y., Fan H., Zhen X., Wang J.	Research Progress on Photoperiod Gene Regulation of heading date in Rice.	Curr Issues Mol Biol	46(9)	10299-10311	2024		
55493	39337933	Zhang X., Liu K., Yang C., Hou B., Yang X., Wang L., Cui S., Lai Y., Li Z., Jiang S.	Detection of Quantitative Trait Loci Associated with Alkaline Tolerance Using Recombinant Inbred Line Population Derived from Longdao5 &#xd7; Zhongyouzao8 at Seedling Stage.	Life (Basel)	14(9)		2024		
55494	39306053	Jena R., Mukherjee A.K., Khandual A., Swain H.	Mechanism of betterment towards growth and induction of defense in rice (Oryza sativa L.) by biopriming with bacterial endophytes isolated from wild rice.	Microb. Pathog.	197	106966	2024		
55495	39266882	Sisharmini A., Wihardjaka A., Enggarini W., Apriana A., Hairmansis A., Amirhusin B.	Field performance and nitrous oxide emissions of transgenic nitrogen use efficient rice lines cultivated in tropical paddy fields.	Transgenic Res.			2024		
55496	39285171	Tao Z., Zhu L., Li H., Sun B., Liu X., Li D., Hu W., Wang S., Miao X., Shi Z.	ACL1-ROC4/5 complex reveals a common mechanism in rice response to brown planthopper infestation and drought.	Nat Commun	15(1)	8107	2024		
55497	39285086	Saha S., Mahapatra N.S., Bhattacharya K., Kundu R., Nimitha K., Ganguly S., Ganguly S., Biswas T., Bhattacharyya P.K., Bhattacharyya S.	The Ratio of A400/A1800 Mapping Identifies Chromosomal Regions Containing Known Photoprotection Recovery-Related Genes in Rice.	Rice (N Y)	17(1)	62	2024		
55498	39290127	Dunivant T.S., Godinez-Vidal D., Perkins C., Lee M.G., Ta M., Groen S.C.	Evolutionary Systems Biology Identifies Genetic Trade-offs In Rice Defense Against Above- and Belowground Attackers.	Plant Cell Physiol.			2024		
55499	39297368	Li L., Jia L., Duan X., Lv Y., Ye C., Ding C., Zhang Y., Qi W., Motte H., Beeckman T., Luo L., Xuan W.	A nitrogen-responsive cytokinin oxidase/dehydrogenase regulates root response to high ammonium in rice.	New Phytol.	244(4)	1391-1407	2024		
55500	39431787	Tanaka W., Ohyama A., Toriba T., Tominaga R., Hirano H.Y.	FINE CULM1 Encoding a teosinte branched1-like TCP Transcription Factor Negatively Regulates Axillary Meristem Formation in Rice.	Plant Cell Physiol.			2024		
55501	39391772	Park D., Jang J., Seo D.H., Kim Y., Jang G.	<i>Bacillus velezensis</i> GH1-13 enhances drought tolerance in rice by reducing the accumulation of reactive oxygen species.	Front Plant Sci	15	1432494	2024		
55502	39316277	Bund&#xf3; M., Val-Torregrosa B., Mart&#xed;n-Cardoso H., Ribaya M., Campos-Soriano L., Bach-Pages M., Chiou T.J., San Segundo B.	Silencing Osa-miR827 via CRISPR/Cas9 protects rice against the blast fungus Magnaporthe oryzae.	Plant Mol. Biol.	114(5)	105	2024		
55503	39321593	Zhao J., Liu X., Hou L., Xu G., Guan F., Zhang W., Luo H., Wu N., Yao B., Zhang C., Delaplace P., Tian J.	The seed endophytic microbe Microbacterium testaceum M15 enhances the cold tolerance and growth of rice (Oryza sativa L.).	Microbiol. Res.	289	127908	2024		
55504	39451519	Wang H., Wang G., Qin R., Gong C., Zhou D., Li D., Luo B., Jin J., Deng Q., Wang S., Zhu J., Zou T., Li S., Liang Y., Li P.	Improvement of Quality and disease resistance for a Heavy-Panicle Hybrid Restorer Line, R600, in Rice (<i>Oryza sativa</i> L.) by Gene Pyramiding Breeding.	Curr Issues Mol Biol	46(10)	10762-10778	2024		
55505	39321623	Zhang K., Han X., Fu Y., Khan Z., Zhang B., Bi J., Hu L., Luo L.	Biochar coating promoted rice growth under drought stress through modulating photosynthetic apparatus, chloroplast ultrastructure, stomatal traits and ROS homeostasis.	Plant Physiol. Biochem.	216	109145	2024		
55506	39336169	Yuan Y., Sheng C.L., Pang L.H., Lu B.R.	Bifunctional Phenylalanine/Tyrosine Ammonia-Lyase (PTAL) Enhances Lignin Biosynthesis: Implications in Carbon Fixation in Plants by Genetic Engineering.	Biology (Basel)	13(9)		2024		
55507	39385986	Raeisi Vanani A., Sheikhi Shahrivar F., Nouri A., Sepehri M.	Exploring rice tolerance to salinity and drought stresses through <i>Piriformospora indica</i> inoculation: understanding physiological and metabolic adaptations.	Front Plant Sci	15	1428631	2024		
55508	39339627	Yang Y., Yang X., Wu L., Sun Z., Zhang Y., Shen Z., Zhou J., Guo M., Yan C.	Phenotypic Analysis and Gene Cloning of Rice floury endosperm Mutant <i>wcr</i> (White-Core Rice).	Plants (Basel)	13(18)		2024		
55509	39408833	Wu R., Chen B., Jia J., Liu J.	Relationship between Protein, MicroRNA Expression in Extracellular Vesicles and Rice Seed Vigor.	Int J Mol Sci	25(19)		2024		
55510	39369649	Gong F., Zhang T., Lu Y., Govindan V., Liu R., Liu J., Wang X., Liu D., Zheng Y., Huang L., Wu B.	Overexpression of TdNACB improves the drought resistance of rice.	Plant Physiol. Biochem.	216	109157	2024		
55511	39457391	Cui Y., Song J., Tang L., Wang J.	<i>YELLOW LEAF AND DWARF 7,</i> Encoding a Novel ankyrin domain-containing protein, Affects Chloroplast Development in Rice.	Genes (Basel)	15(10)		2024		
55512	39452093	Shi H., Zhang W., Cao H., Zhai L., Song Q., Xu J.	Identification of Candidate Genes for cold tolerance at Seedling Stage by GWAS in Rice (<i>Oryza sativa</i> L.).	Biology (Basel)	13(10)		2024		
55513	39409583	Sricha T., Monkham T., Sanitchon J., Aung Nan MS., Suwannual T., Chankaew S.	Breeding Rice to Increase Anthocyanin Yield Per Area through Small, Black grain size and Three Grains per Spikelet.	Plants (Basel)	13(19)		2024		
55514	39329182	Mohanty J.K., Parida S.K.	Stripping off the rice panicle: induced genetic variation awakens the sheathed spikelet for a better yield.	J. Exp. Bot.	75(18)	5459-5462	2024		
55515	39408870	Dong L., Shi J., Persson S., Huang G., Zhang D.	RMD and Its Suppressor MAPK6 Control Root Circumnutation and Obstacle Avoidance via BR Signaling.	Int J Mol Sci	25(19)		2024		
55516	39408737	Chen L.H., Xu M., Cheng Z., Yang L.T.	Effects of Nitrogen Deficiency on the Photosynthesis, Chlorophyll <i>a</i> Fluorescence, Antioxidant System, and Sulfur Compounds in <i>Oryza sativa</i>.	Int J Mol Sci	25(19)		2024		
55517	38995091	Hussain W., Anumalla M., Ismail A.M., Walia H., Singh V.K., Kohli A., Bhosale S., Bhardwaj H.	Revisiting FR13A for submergence tolerance: beyond the SUB1A gene.	J. Exp. Bot.	75(18)	5477-5483	2024		
55518	39333851	Ohbayashi K., Sugiyama Y., Nohmi T., Nishimura K., Nakazaki T., Sato Y.I., Masumura T., Iwasaki Y.	Anekomochi glutinous rice provides low postprandial glycemic response by enhanced insulin action via GLP-1 release and vagal afferents activation.	J Physiol Sci	74(1)	47	2024		
55519	39343926	Carey-Fung O., Beasley J.T., Broad R.C., Hellens R.P., Johnson A.A.T.	Discovery of a conserved translationally repressive upstream open reading frame within the iron-deficiency response regulator IDEF2.	BMC Plant Biol.	24(1)	891	2024		
55520	39409618	Chen M., Zhu C., Zhang H., Chen S., Wang X., Gan L.	Endogenous &#x3b3;-Aminobutyric Acid Accumulation Enhances Salinity Tolerance in Rice.	Plants (Basel)	13(19)		2024		
55521	39342098	Rebeira S., Jayatilake D., Prasantha R., Kariyawasam T., Suriyagoda L.	Assessment of antioxidant properties in selected pigmented and non-pigmented rice (Oryza sativa L.) germplasm and determination of its association with Rc gene haplotypes.	BMC Plant Biol.	24(1)	884	2024		
55522	39456431	Lee K., Back K.	Functional Characterization of the Ciliate <i>Stylonychia lemnae</i> Serotonin <i>N</i>-Acetyltransferase, a Pivotal Enzyme in Melatonin Biosynthesis and Its Overexpression Leads to Peroxidizing Herbicide Tolerance in Rice.	Antioxidants (Basel)	13(10)		2024		
55523	39343873	Altun H., Orcan P.	Responses to exogenous elicitor treatment in lead-stressed Oryza sativa L.	BMC Plant Biol.	24(1)	897	2024		
55524	39230778	Jesudoss D., Ponnurangan V., Kumar M.P.R., Kumar K.K., Mannu J., Sankarasubramanian H., Duraialagaraja S., Eswaran K., Loganathan A., Shanmugam V.	Advances in breeding, biotechnology, and nanotechnological approaches to combat sheath blight disease in rice.	Mol. Biol. Rep.	51(1)	958	2024		
55525	39260627	Roessner C., Griep S., Becker A.	A land plant phylogenetic framework for GLABROUS INFLORESCENCE STEMS (GIS), SUPERMAN, JAGGED and allies plus their TOPLESS co-repressor.	Mol. Phylogenet. Evol.	201	108195	2024		
55526	39250703	Toriyama K., Iwai Y., Takeda S., Takatsuka A., Igarashi K., Furuta T., Chen S., Kanaoka Y., Kishima Y., Arimura S.I., Kazama T.	Cryptic cytoplasmic male sterility-causing gene in the mitochondrial genome of common japonica rice.	Plant J.	120(3)	941-949	2024		
55527	38848718	Yao J., Chu Q., Guo X., Shao W., Shang N., Luo K., Li X., Chen H., Cheng Q., Mo F., Zheng D., Xu F., Guo F., Zhu Q.H., Deng S., Chu C., Xu X., Liu H., Fan L.	Spatiotemporal transcriptomic landscape of rice embryonic cells during seed germination.	Dev. Cell	59(17)	2320-2332.e5	2024		
55528	39293994	Gholizadeh F., Prerostov&#xe1; S., P&#xe1;l M., Bencz&#xfa;r K., Hamow K&#xc1;., Majl&#xe1;th I., Kun J., Gyenesei A., Urb&#xe1;n P., Szalai G., Vankov&#xe1; R., Janda T.	Elucidating light and temperature-dependent signalling pathways from shoot to root in rice plants: Implications for stress responses.	Physiol Plant	176(5)	e14541	2024		
55529	39232945	Zhang C., Feng Q., Ruan J., Wang G.L., You X., Ning Y.	Targeting conserved secreted effectors to control rice blast.	Trends Plant Sci.			2024		
55530	39273941	Shan C., Shi C., Liang X., Zu Y., Wang J., Li B., Chen J.	Variations in Root Characteristics and Cadmium Accumulation of Different Rice Varieties under Dry Cultivation Conditions.	Plants (Basel)	13(17)		2024		
55531	39228865	Ueda Y., Kondo K., Saito H., Pariasca-Tanaka J., Takanashi H., Ranaivo H.N., Rakotondramanana M., Wissuwa M.	Characterization of quantitative trait loci from DJ123 (<i>aus</i>) independently affecting panicle structure traits in <i>indica</i> rice cultivar IR64.	Mol. Breed.	44(9)	57	2024		
55532	39298656	Wang D., Xu M., Xu T.Y., Lin X.Y., Musazade E., Lu J.M., Yue W.J., Guo L.Q., Zhang Y.	Specific physiological responses to alkaline carbonate stress in rice (<i>Oryza sativa</i>) seedlings: organic acid metabolism and hormone signalling.	Funct. Plant Biol.	51		2024		
55533	39226401	Sun Y., Ang Y., Fu M., Bai Y., Chen J., He Y., Zeng H.	Temperature change regulates pollen fertility of a PTGMS rice line PA64S by modulating the ROS homeostasis and PCD within the tapetum.	Plant J.	120(2)	615-636	2024		
55534	39363670	Wang R., Tang G., Lu Y., Zhang D., Cai S., He H., Zhang H., Xiong Q.	Root physiological and soil microbial mechanisms underlying responses to nitrogen deficiency and compensation in Indica and Japonica rice.	Physiol Plant	176(5)	e14549	2024		
55535	39297385	Wang J.Y., Balakrishna A., Mart&#xed;nez C., Chen G.E., Sioud S., de Lera AR., Al-Babili S.	The rice orobanchol synthase catalyzes the hydroxylation of the noncanonical strigolactone methyl 4-oxo-carlactonoate.	New Phytol.			2024		
55536	39294226	Suddal T., Awan M.F., Ali S., Sarwar M.F., Iqbal S., Ali Q., Javed M.A., Alshahrani M.Y.	Target prediction of potential candidate miRNAs from Oryza sativa to silence the Pyricularia oryzae genome in rice blast.	Sci Rep	14(1)	21813	2024		
55537	39261634	Liu Y., Gao J., Zhao Y., Fu Y., Yan B., Wan X., Cheng G., Zhang W.	Effects of different phosphorus and potassium supply on the root architecture, phosphorus and potassium uptake, and utilization efficiency of hydroponic rice.	Sci Rep	14(1)	21178	2024		
55538	39330514	Zhu X.Q., Li M., Li R.P., Tang W.Q., Wang Y.Y., Fei X., He P., Han G.Y.	Rice Varieties Intercropping Induced Soil Metabolic and Microbial Recruiting to Enhance the Rice Blast (<i>Magnaporthe Oryzae</i>) Resistance.	Metabolites	14(9)		2024		
55539	39293142	Khan K.Y., Ali B., Ghani H.U., Cui X., Zhang S., Xia Q., Fu L., Tan J., Lysenko V., Guo Y.	Metabolomics combined with proteomics reveals phytotoxic effects of norfloxacin under drought stress on Oryza sativa.	Plant Physiol. Biochem.	216	109130	2024		
55540	39257005	Zhao Z., Sun A., Shan W., Zheng X., Wang Y., Bai L., Xu Y., An Z., Wang X., Wang Y., Fan J.	OsRbohI is the indispensable NADPH oxidase for molecular-patterns-induced reactive oxygen species production in rice.	Plant Commun		101129	2024		
55541	39271558	Wang L., Ma X., Liu Y., Liu G., Wei H., Luo Z., Liu H., Yan M., Zhang A., Yu X., Xia H., Luo L.	Flexibility of parental-like or maternal-like gene expression under diverse environments contributes to combined drought avoidance and drought tolerance in a water-saving&#xa0;and&#xa0;drought-resistance rice hybrid.	Theor. Appl. Genet.	137(10)	221	2024		
55542	39317771	Lu X., He Y., Guo J.Q., Wang Y., Yan Q., Xiong Q., Shi H., Hou Q., Yin J., An Y.B., Chen Y.D., Yang C.S., Mao Y., Zhu X., Tang Y., Liu J., Bi Y., Song L., Wang L., Yang Y., He M., Li W., Chen X., Wang J.	Dynamics of epitranscriptomes uncover translational reprogramming directed by ac4C in rice during pathogen infection.	Nat Plants	10(10)	1548-1561	2024		
55543	39376239	Chen F., Chen L., Yan Z., Xu J., Feng L., He N., Guo M., Zhao J., Chen Z., Chen H., Yao G., Liu C.	Recent advances of CRISPR-based genome editing for enhancing staple crops.	Front Plant Sci	15	1478398	2024		
55544	39339633	Liu B., Nie S., Gao S., Liu Q., Liu Y., Mu F., Zhang B., Zhao B., Gao H., Wu L., Xiao M., Li K.	Advancements in Cold-Region Rice Breeding: The 4S Phenotypic-Design Breeding System and Its Applications in Heilongjiang.	Plants (Basel)	13(18)		2024		
55545	39307530	Wang L., O'Conner S., Tanvir R., Zheng W., Cothron S., Towery K., Bi H., Ellison E.E., Yang B., Voytas D.F., Li L.	CRISPR/Cas9-based editing of NF-YC4 promoters yields high-protein rice and soybean.	New Phytol.			2024		
55546	39349087	Zheng X., Yang J., Wang Q., Yao P., Xiao J., Mao S., Zhang Z., Zeng Y., Zhu J., Hou J.	Characterisation and evolution of the PRC2 complex and its functional analysis under various stress conditions in rice.	Int. J. Biol. Macromol.	280(Pt 4)	136124	2024		
55547	39353377	Zhou W., Yang J., Qi L., Wang G., Guan C., Li Q.	The role of Ni- and Cd-resistant rhizobacteria in promoting the growth of rice seedlings and alleviating the combined phytotoxicity of Ni and Cd.	Ecotoxicol. Environ. Saf.	285	117138	2024		
55548	39371519	Payaka A., Kongdin M., Teepoo S., Sansenya S.	Gamma Irradiation and Exogenous Proline Enhanced the Growth, 2AP Content, and Inhibitory Effects of Selected Bioactive Compounds against &#x3b1;-glucosidase and &#x3b1;-amylase in Thai Rice.	Preventive Nutrition and Food Science	29(3)	354-364	2024		
55549	39349620	Sun C., Zhu J., Zhu Y., Cao J., Zhang J., Zhang Y., Zhou H., Zhu Y., Ji Y., Ding R., Xiong Q., Liu X.	Transcriptome analysis of the coexpression network of genes related to antioxidant characteristics after grain filling in purple rice.	Sci Rep	14(1)	22612	2024		
55550	39410128	Pang X., Zhang D., Xue H., Yao D., Shen H., Mou B., Gu P., Zhou R., Meng F., Wu J., Lei D., Bai B.	Effects of Low Field Temperature on the Physicochemical Properties and Fine Structure Stability of High-Quality Rice Starch during the Grain Filling Stage.	Foods	13(19)		2024		
55551	39190344	Badoni S., Pasion-Uy EA., Kor S., Kim S.R., Tiozon R.N., Misra G., Buenafe R.J.Q., Labarga L.M., Ramos-Castrosanto AR., Pratap V., Slamet-Loedin I., Steimker J.V., Alseekh S., Fernie A.R., Kohli A., Khush G.S., Sreenivasulu N.	Multiomics of a rice population identifies genes and genomic regions that bestow low glycemic index and high protein content.	Proc. Natl. Acad. Sci. U.S.A.	121(36)	e2410598121	2024	SBE3	SBEIII*, SBEIII, Sbe3, RBE3, QEIIa, QEIIA, BEIIb, BEIIB, SBEIIb, OsBEIIb, sbe3, SBE III, OsSBEIIb, SBEIIb
55552	39209179	Chen Y., Zhang J.	Multiple functions and regulatory networks of WRKY33 and its orthologs.	Gene	931	148899	2024		
55553	38861387	Xu S.	Estimating genetic variance contributed by a quantitative trait locus: removing nuisance parameters.	Genetics	227(4)		2024		
55554	39088611	Satterlee J.W., Alonso D., Gramazio P., Jenike K.M., He J., Arrones A., Villanueva G., Plazas M., Ramakrishnan S., Benoit M., Gentile I., Hendelman A., Shohat H., Fitzgerald B., Robitaille G.M., Green Y., Swartwood K., Passalacqua M.J., Gagnon E., Hilgenhof R., Huggins T.D., Eizenga G.C., Gur A., Rutten T., Stein N., Yao S., Poncet A., Bellot C., Frary A., Knapp S., Bendahmane M., S&#xe4;rkinen T., Gillis J., Van Eck J., Schatz M.C., Eshed Y., Prohens J., Vilanova S., Lippman Z.B.	Convergent evolution of plant prickles by repeated gene co-option over deep time.	Science	385(6708)	eado1663	2024		
55555	39136985	Ma B., Zhang Y., Fan Y., Zhang L., Li X., Zhang Q.Q., Shu Q., Huang J., Chen G., Li Q., Gao Q., Zhu X.G., He Z., Wang P.	Genetic improvement of phosphate-limited photosynthesis for high yield in rice.	Proc. Natl. Acad. Sci. U.S.A.	121(34)	e2404199121	2024		
55556	39133859	Dong J., Yu X.H., Dong J., Wang G.H., Wang X.L., Wang D.W., Yan Y.C., Xiao H., Ye B.Q., Lin H.Y., Yang G.F.	An artificially evolved gene for herbicide-resistant rice breeding.	Proc. Natl. Acad. Sci. U.S.A.	121(34)	e2407285121	2024		
55557	39234545	Lee S., Kim J.A., Song J., Choe S., Jang G., Kim Y.	Plant growth-promoting rhizobacterium <i>Bacillus megaterium</i> modulates the expression of antioxidant-related and drought-responsive genes to protect rice (<i>Oryza sativa</i> L.) from drought.	Front Microbiol	15	1430546	2024		
55558	39180227	Kwak J.S., Lee K.H., Min W.K., Lee S.J., Song J.T., Seo H.S.	The transmembrane domain of the rice small protein OsS1Fa1 is responsible for subcellular localization and drought tolerance.	Plant Biol (Stuttg)			2024		
55559	39196928	Li C., Haider I., Wang J.Y., Quinodoz P., Suarez Duran HG., M&#xe9;ndez LR., Horber R., Fiorilli V., Votta C., Lanfranco L., Correia de Lemos SM., Jouffroy L., Moegle B., Miesch L., De Mesmaeker A., Medema M.H., Al-Babili S., Dong L., Bouwmeester H.J.	OsCYP706C2 diverts rice strigolactone biosynthesis to a noncanonical pathway branch.	Sci Adv	10(35)	eadq3942	2024	SAMT,4OCLAMT1,F3'H1	OsSAMT, OsJMT1, JMT1, Os4OCLAMT2, 4OCLAMT2,Os4OCLAMT1,OsF3'H1, OsCYP71U1, CYP71U1, OsCYP706C2, CYP706C2
55560	39189987	Dai Y., Feng X., Liu Z., Wang M., Zhou Y., Cui L., Wei X., Zhu Z.	miR1432 negatively regulates cold tolerance by targeting OsACAs.	Plant Cell Environ.	47(12)	5443-5456	2024		
55561	39246813	P&#xe9;lissier PM., Parizot B., Jia L., De Knijf A., Goossens V., Gantet P., Champion A., Audenaert D., Xuan W., Beeckman T., Motte H.	Nitrate and ammonium, the yin and yang of nitrogen uptake: a time-course transcriptomic study in rice.	Front Plant Sci	15	1343073	2024	_,EIL1A,RLI1,NPF6.5	OsNR1, NR1, nia1, OsNIA1, NIA1, OsNIA2, NIA2,EIL1, OsEIL1, EIL1a, OsEIL1a, MHZ6/OsEIL1, MHZ6, OsMHZ6,OsRLI1, RLI1/HINGE1, HINGE1, OsHINGE1,OsNRT1.1B, NRT1.1B, OsNPF6.5
55562	39180632	Antony A., Veerappapillai S., Karuppasamy R.	Deciphering early responsive signature genes in rice blast disease: an integrated temporal transcriptomic study.	J. Appl. Genet.			2024		
55563	39190135	Li J., Wang D., Zhao P., Chen T., Ma L., Zhou Y.	Engineering broad-spectrum resistance to rice bacterial blight by editing the OsETR susceptible haplotype using CRISPR/Cas9.	Plant Cell Rep.	43(9)	222	2024		
55564	39273109	Luo X., Bai L., Huang J., Peng L., Hua J., Luo S.	Genome-Wide Association Studies Reveal That the Abietane Diterpene Isopimaric Acid Promotes Rice Growth through Inhibition of Defense Pathways.	Int J Mol Sci	25(17)		2024	ASC1,BUD13	OsASC1,OsBUD13
55565	39198267	Jiao A., Chen L., Ma X., Ma J., Cui D., Han B., Sun J., Han L.	Linkage Mapping and Discovery of Candidate Genes for drought tolerance in Rice During the Vegetative Growth Period.	Rice (N Y)	17(1)	53	2024	CHR731,ZOS4-12	OsCHR731,  OsRING361, RING361,OsZOS4-12
55566	39208475	Zhang W., Yang S., Feng Y., Liang B., Li C., Li Q., Zeng Z., Ji X., Liu J., Wang Y.	The tonoplast-localized OsTIP2;1 is involved in aluminum detoxification in rice.	Plant Physiol. Biochem.	215	109063	2024		
55567	39190806	Pandey M., Verma L., Kohli P.S., Singh B., Kochi A., Giri J.	A lipid synthase maintains metabolic flux for jasmonate synthesis to regulate root growth and phosphate homeostasis.	Plant Physiol.			2024		
55568	39169629	Hu D., Yao Y., Lv Y., You J., Zhang Y., Lv Q., Li J., Hutin S., Xiong H., Zubieta C., Lai X., Xiong L.	The OsSRO1c-OsDREB2B complex undergoes protein phase transition to enhance cold tolerance in rice.	Mol Plant	17(10)	1520-1538	2024		
55569	39277422	Wang H., Li X., Ren Y., Gao H., Feng Z., Dong L.	Low expression of auxin receptor EcAFB4 confers resistance to florpyrauxifen-benzyl in Echinochloa crus-galli (L.) P. Beauv.	Pestic Biochem Physiol	204	106099	2024		
55570	39192694	Ali A., Riaz A., Wu X.	Unlocking fertility in the female gametophyte: a DEAD-box RNA helicase is essential for embryo sac development and seed setting.	J. Exp. Bot.	75(16)	4684-4688	2024	NRFG4	OsRH52A, RH52A, OsNRFG4
55571	39169077	Yin W., Yang H., Feng P., Qi P., Li B., Li Y., Huang Q., Peng Y., Wang N., Hu Y.	Rapid function analysis of OsiWAK1 using a Dual-Luciferase assay in rice.	Sci Rep	14(1)	19412	2024	EAT1,PDT1,BHLH142,TDR,_	OsEAT1, OsbHLH141, EAT1/DTD1, bHLH141, DTD1, DTD, DLN120, OsDLN120,OsGAUT2, GAUT, OsPDT1,OsbHLH142, bHLH142, TIP2, OsTIP2, TIP2/TDR/bHLH142,tdr, OsbHLH005, bHLH005, OsbHLH5, bhlh5, TDR1, OsTDR, OsTDR1, OsMYC5, MYC5,OsiWAK1, WAK1
55572	39273836	Tu M., Li Z., Zhu Y., Wang P., Jia H., Wang G., Zhou Q., Hua Y., Yang L., Xiao J., Song G., Li Y.	Potential Roles of the GRF Transcription Factors in Sorghum Internodes during Post-Reproductive Stages.	Plants (Basel)	13(17)		2024		
55573	39171847	Zheng S., Chen J., He Y., Lu J., Chen H., Liang Z., Zhang J., Liu Z., Li J., Zhuang C.	The OsAGO2-OsNAC300-OsNAP module regulates leaf senescence in rice.	J Integr Plant Biol			2024		
55574	39169597	Jiang L., Xiao W., Chen H., Qi Y., Kuang X., Shi J., Liu Z., Cao J., Lin Q., Yu F., Wang L.	The OsGAPC1-OsSGL module negatively regulates salt tolerance by mediating abscisic acid biosynthesis in rice.	New Phytol.	244(3)	825-839	2024		
55575	39178266	Qiu T., Wei S., Fang K., Zhang M., Li Y., Feng Y., Cheng Y., Zhang S., Tian J., Gao A., Yang Q., Yang M., Bhadauria V., Li J., Peng Y.L., Zhao W.	The atypical Dof transcriptional factor OsDes1 contributes to stay-green, grain yield, and disease resistance in rice.	Sci Adv	10(34)	eadp0345	2024	PETC,PR1B,DES1	PetC, OsPETC,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1, OsPR1a, PR1a,OsDes1
55576	39210441	Zhang F., Yang C., Guo H., Li Y., Shen S., Zhou Q., Li C., Wang C., Zhai T., Qu L., Zhang C., Liu X., Luo J., Chen W., Wang S., Yang J., Yu C., Liu Y.	Dissecting the genetic basis of UV-B responsive metabolites in rice.	Genome Biol.	25(1)	234	2024	MYB9,MYB44	OsMyb9, OsMyb8, OsMYB110, Myb9, Myb8, MYB110, Os2R_MYB87, 2R_MYB87,R2R3-MYB, OsMYB44
55577	39179980	Zhang H.C., Gong Y.H., Tao T., Lu S., Zhou W.Y., Xia H., Zhang X.Y., Yang Q.Q., Zhang M.Q., Hong L.M., Guo Q.Q., Ren X.Z., Yang Z.D., Cai X.L., Ren D.Y., Gao J.P., Jin S.K., Leng Y.J.	Genome-wide identification of R2R3-MYB transcription factor subfamily genes involved in salt stress in rice (Oryza sativa L.).	BMC Genomics	25(1)	797	2024		
55578	39233915	Li J., He C., Liu S., Guo Y., Zhang Y., Zhang L., Zhou X., Xu D., Luo X., Liu H., Yang X., Wang Y., Shi J., Yang B., Wang J., Wang P., Deng X., Sun C.	Research progress and application strategies of sugar transport mechanisms in rice.	Front Plant Sci	15	1454615	2024		
55579	39171750	Jiang T., Huang N., Wang Z., Li J., Ma L., Wang X., Shen L., Zhang Y., Yu Y., Wang W., Fan Y., Liu K., Zhao Z., Xiong Z., Song Q., Tang H., Zhang H., Bao Y.	A rice amino acid transporter OsMP1 acts as a quantitative trait locus against blast fungus and leaf-blight bacterium.	J. Exp. Bot.			2024		
55580	39189440	Yang T., Ma X., Zhang Q., Li L., Zhu R., Zeng A., Liu W., Liu H., Wang Y., Han S., Khan N.U., Li J., Li Z., Zhang Z., Zhang H.	Natural variation in the Tn1a promoter regulates tillering in rice.	Plant Biotechnol. J.			2024		
55581	39215633	Li P., Quan H., He W., Wu L., Chen Z., Yong B., Liu X., He C.	Rice BARENTSZ genes are required to maintain floral developmental stability against temperature fluctuations.	Plant J.	120(2)	637-657	2024		
55582	39166250	Yin J., Zhang C., Zhang Q., Long F., Hu W., Zhou Y., Mou F., Zhong Y., Wu B., Zhu M., Zou L., Zhu X.	A single amino acid substitution in the AAA-type ATPase LRD6-6 activates immune responses but decreases grain quality in rice.	Front Plant Sci	15	1451897	2024	SNF7,LMR	OsSNF7, OsSnf7, Snf7 ,OsLMR, LRD6-6, OsLRD6-6, SPL-A, OsSPL-A
55583	39134161	Yang W., Yang Z., Yang L., Li Z., Zhang Z., Wei T., Huang R., Li G.	Genomic and transcriptomic analyses of the elite rice variety Huizhan provide insight into disease resistance and heat tolerance.	Genomics	116(5)	110915	2024		
55584	39195679	Kang Y., Li C.Z., Ullah A., Zhang Q., Yu X.Z.	The Accumulation of Abscisic Acid Increases the Innate Pool of Soluble Phenolics through Polyamine Metabolism in Rice Seedlings under Hexavalent Chromium Stress.	Toxics	12(8)		2024	AIH,ADC1,CPA1,CPA4	OsAIH,OsADC1, ARGDC, ADC, OsAdc1,OsCPA1,OsCPA4
55585	39166246	Zhang R., Xi X., Chen X., Wang Y., Zhou M.	Comparing time-series transcriptomes between chilling-resistant and -susceptible rice reveals potential transcription factors responding to chilling stress.	Front Plant Sci	15	1451403	2024		
55586	39128266	Jung Y.J., Park J.H., Lim H.S., Lee J.R.	Heat stress mediated structural and functional change of tetratricopeptide repeat-containing thioredoxin, OsTDX, in Oryza sativa.	Biochem. Biophys. Res. Commun.	736	150519	2024		
55587	39107344	Yang C., Shen S., Zhan C., Li Y., Zhang R., Lv Y., Yang Z., Zhou J., Shi Y., Liu X., Shi J., Zhang D., Fernie A.R., Luo J.	Variation in a Poaceae-conserved fatty acid metabolic gene cluster controls rice yield by regulating male fertility.	Nat Commun	15(1)	6663	2024	ABCG4,GPAT6,CYP704B2,MS2,MFO1,LTPG2,COG1,_	OsABCG4, OsABCG22, ABCG22,OsGPAT6,OsCYP704B2,OsMS2, OsDPW, DPW, DPW1, OsDPW1, OsFAR2, FAR2,OsMADS6, MADS6, OsMFO1,OsLTPG2, OsLTPg2, LTPL82,OsMADS17, MADS17, NMADS3, RMADS213, nmads3,OsKCS11, KCS11
55588	39113415	Ko S.S., Lu W.C., Hung J.C., Chang H.F., Li M.J., Yeh K.C., Chiou T.J.	Maternal effect contributes to grain-filling defects of Ospho1;2 rice mutants.	New Phytol.	244(2)	351-357	2024		
55589	39115620	Kim E.G., Jang Y.H., Park J.R., Wang X.H., Jan R., Farooq M., Asaf S., Asif S., Kim K.M.	OsCKq1 Regulates heading date and grain weight in Rice in Response to Day Length.	Rice (N Y)	17(1)	48	2024	RFT1,HD3A,GHD7,EF1,CK1A.3	FT-L 3, OsFTL3, FTL3, FT-L3, RFT, OsRFT1,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,Ghd2, Ghd7, OsGhd7, OsCCT26, OsCMF8, OsI, Ghd7/Hd4, Hd4, EH7-1/Hd4, Ghd7-0a, EH7-1, EH7/Ghd7, EH7, OsEH7, GLW7.1, OsGLW7.1,Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,OsCK1a.3, UCIP10, OsUCIP10, OsCKq1, CKq1
55590	39101333	Lu C., Zhang Y., Xu Y., Wei T., Chen Q.	Salivary-secreted vitellogenin suppresses H2O2 burst of plants facilitating Recilia dorsalis leafhopper feeding.	Pest Manag. Sci.			2024		
55591	39098874	Calayugan M.I.C., Hore T.K., Palanog A.D., Amparado A., Inabangan-Asilo MA., Joshi G., Chintavaram B., Swamy B.P.M.	Deciphering the genetic basis of agronomic, yield, and nutritional traits in rice (Oryza sativa L.) using a saturated GBS-based SNP linkage map.	Sci Rep	14(1)	18024	2024		
55592	39098914	Shan S., Tang P., Wang R., Ren Y., Wu B., Yan N., Zhang G., Niu N., Song Y.	The characteristic analysis of TaTDF1 reveals its function related to male sterility in wheat (Triticum aestivum L.).	BMC Plant Biol.	24(1)	746	2024		
55593	38852248	Liu J., Lv Y., Li M., Wu Y., Li B., Wang C., Tao Q.	Peroxidase in plant defense: Novel insights for cadmium accumulation in rice (Oryza sativa L.).	J. Hazard. Mater.	474	134826	2024		
55594	39096692	Guo Z., Guo J., Yu H., Huang H., Ye D., Liu T., Zhang X., Zhang L., Zheng Z., Wang Y., Li T.	OsWNK9 regulates cadmium concentration in brown rice by restraining cadmium transport from straw to brown rice.	Ecotoxicol. Environ. Saf.	283	116810	2024		
55595	39152344	Li B., Zhou X., Yao W., Lin J., Ding X., Chen Q., Huang H., Chen W., Huang X., Pan S., Xiao Y., Liu J., Liu X., Liu J.	NADP-malic Enzyme OsNADP-ME2 Modulates plant height Involving in Gibberellin Signaling in Rice.	Rice (N Y)	17(1)	52	2024	NADP-ME2,SLR1	OscytME1, OsNADP-ME2-3, NADP-ME2-3,slr1-1, slr1, slr, GAI, OsGAI, OsSLR1, Os SLR1, OsRGA1, OsGRAS-18, OsGRAS-18, GRAS-18, GRAS18, SLR-1
55596	39151038	Duan Y., Yang G., Tang J., Fang Y., Wang H., Wang Z., Liu H., Chen X., Huang J., Chen J., Xu Q., Zheng L., Chen X.	Ustilaginoidea virens secreted effector UvSec117 hijacks OsWRKY31-OsAOC module to suppress jasmonic acid-mediated immunity in rice.	Plant Biotechnol. J.			2024		
55597	39199257	Wang J., Nguyen N.K., Liu D., Jwa N.S.	Mitogen-Activated Protein Kinase Kinase OsMEK2 Positively Regulates Ca2+ Influx and Ferroptotic Cell Death during Rice Immune Responses.	Antioxidants (Basel)	13(8)		2024	PLC2,CNGC11,PLC4,CNGC12,MKK1,RBOHB,NADP-ME2	OsPLC2, OsC2DP30, C2DP30,OsCNGC11, OsCNGC13, CNGC13, SSS1-D ,OsPLC4, OsC2DP41, C2DP41,OsCNGC12, OsCNGC2, CNGC2 ,OsMKK1, OsMEK2, MEK2, OsMAPKK1, MAPKK1, OsMAP2K2, MAP2K2,rbohB, OsrbohB, Os rbohB, OsRbohB, OsNox1, Nox1, Os-RbohB, RbohB, OsRboh1, Rboh1,OscytME1, OsNADP-ME2-3, NADP-ME2-3
55598	39160481	Shen X., Dai S., Chen M., Huang Y.	Spermidine augments salt stress resilience in rice roots potentially by enhancing OsbZIP73's RNA binding capacity.	BMC Plant Biol.	24(1)	786	2024	SAUR10,SAUR27,SAUR29,SAUR7,SPARK1,PYL/RCAR13,TFX1	OsSAUR10,OsSAUR27,OsSAUR29,OsSAUR7,OsSPARK1,OsPYL/RCAR1, PYL1, OsPYL1, OsPYL4, PYL4,OsbZIP73, bZIP73, OsTFX1
55599	39160350	Tran T.T.T., Le L.H.M., Nguyen T.T., Nguyen T.C., Hoang T.T.H., Do P.T., To H.T.M.	QTL-seq identifies genomic region associated with the crown root development under Jasmonic acid response.	Funct. Integr. Genomics	24(5)	141	2024		
55600	39173875	Qiao Y., Wang Y., Gu Y., Zhang N., Yang H., Liu J.	An ABC transporter-mediated transport and metabolism of the pesticide bentazone in rice (Oryza sativa L.).	Journal of Advanced Research			2024		
55601	39181086	Wang S., Zeng J., Zhang T., Yang L., Yang Y., Lu Z., Jin X., Wang M., Guo S.	Ammonium enhances rice resistance to Magnaporthe oryzae through H2O2 accumulation.	Plant Physiol. Biochem.	215	109058	2024		
55602	39138747	Vashisth V., Sharma G., Giri J., Sharma A.K., Tyagi A.K.	Rice A20/AN1 protein, OsSAP10, confers water-deficit stress tolerance via proteasome pathway and positive regulation of ABA signaling in Arabidopsis.	Plant Cell Rep.	43(9)	215	2024		
55603	39140870	Somashekar H., Takanami K., Benitez-Alfonso Y., Oishi A., Hiratsuka R., Nonomura K.I.	Callose Deficiency Modulates Plasmodesmata Frequency and Extracellular Distance in Rice pollen Mother and Tapetal cells.	Ann. Bot.			2024		
55604	39135382	Ding W., Gou Y., Li Y., Li J., Fang Y., Liu X., Zhu X., Ye R., Heng Y., Wang H., Shen R.	A jasmonate-mediated regulatory network modulates diurnal floret opening time in rice.	New Phytol.	244(1)	176-191	2024		
55605	39206039	Chen S., De Zutter N., Meijer A., Gistelinck K., Wytynck P., Verbeke I., Osterne V.J.S., Kondeti S., De Meyer T., Audenaert K., Van Damme EJM.	Overexpression of the ribosome-inactivating protein <i>OsRIP1</i> modulates the jasmonate signaling pathway in rice.	Front Plant Sci	15	1385477	2024	TUBA1,RIP1.1,RPS5,PSBR3	OsTubA1, TubA1, OS-TubA3, TubA3,OsRIP1, RIP1, OsjRIP1.1,RPS5A, OsRPS5, OsRPS5A,OsPsbR3, PsbR3
55606	39153390	Huang Y., Huang L., Cheng M., Li C., Zhou X., Ullah A., Sarfraz S., Khatab A., Xie G.	Progresses in biosynthesis pathway, regulation mechanism and potential application of 2-acetyl-1-pyrroline in fragrant rice.	Plant Physiol. Biochem.	215	109047	2024		
55607	39262958	Jalil S., Nazir M.M., Eweda M.A., Zulfiqar F., Ali H.M., Yong J.W.H., Jin X.	Assessment of rice genotypes through the lens of morpho-physiological and biochemical traits in response to arsenic stress.	Heliyon	10(16)	e36093	2024		
55608	39212859	Wu B., Luo H., Chen Z., Amin B., Yang M., Li Z., Wu S., Salmen S.H., Alharbi S.A., Fang Z.	Rice Promoter Editing: An Efficient Genetic Improvement Strategy.	Rice (N Y)	17(1)	55	2024		
55609	39207611	Xu W., Peng X., Li Y., Zeng X., Yan W., Wang C., Wang C.R., Chen S., Xu C., Tang X.	OsSNDP4, a Sec14-nodulin Domain Protein, is Required for pollen Development in Rice.	Rice (N Y)	17(1)	54	2024		
55610	39273165	Liu J., Zhu L., Cao D., Zhu X., Zhang H., Zhang Y., Liu J.	Identification of Drought Stress-Responsive Genes in Rice by Random Walk with Multi-Restart Probability on MultiPlex Biological Networks.	Int J Mol Sci	25(17)		2024		
55611	39172289	Wang L., Cui J., Zhang N., Wang X., Su J., Vall&#xe9;s MP., Wu S., Yao W., Chen X., Chen D.	OsIPK1 frameshift mutations disturb phosphorus homeostasis and impair starch synthesis during grain filling in rice.	Plant Mol. Biol.	114(5)	91	2024		
55612	39273349	Li Q., Zhu P., Yu X., Xu J., Liu G.	Physiological and Molecular Mechanisms of Rice Tolerance to Salt and Drought Stress: Advances and Future Directions.	Int J Mol Sci	25(17)		2024		
55613	39196924	Xu L., Yang L., Li A., Guo J., Wang H., Qi H., Li M., Yang P., Song S.	An AP2/ERF transcription factor confers chilling tolerance in rice.	Sci Adv	10(35)	eado4788	2024		
55614	39173048	Bartholom&#xe9; J., Ospina J.O., Sandoval M., Espinosa N., Arcos J., Ospina Y., Frouin J., Beartschi C., Ghneim T., Grenier C.	Genomic selection for tolerance to aluminum toxicity in a synthetic population of upland rice.	PLoS ONE	19(8)	e0307009	2024		
55615	39241630	Chen Q., Zhu Y., Zhang J., Tong Y., Liu H., Rensing C., Feng R.	Toxicity of antimony to plants: Effects on metabolism of N and S in a rice plant.	Plant Physiol. Biochem.	216	109069	2024		
55616	39146245	Zhou C., Wei X., Liu S., Liu C., Tian K., Zhang D.	Global Characterization of DNA Methylation during Rice leaf angle Development.	J. Agric. Food Chem.	72(34)	19219-19231	2024		
55617	39336620	Horgan F.G.	Virulence Adaptation by Rice Planthoppers and Leafhoppers to Resistance Genes and Loci: A Review.	Insects	15(9)		2024		
55618	39214468	Joshi K., Ahmed S., Ge L., Avestakh A., Oloyede B., Phuntumart V., Kalinoski A., Morris P.F.	Spatial organization of putrescine synthesis in plants.	Plant Sci.	349	112232	2024		
55619	39334714	Thepbandit W., Srisuwan A., Athinuwat D.	Priming of Exogenous Salicylic Acid under Field Conditions Enhances Crop Yield through Resistance to <i>Magnaporthe oryzae</i> by Modulating Phytohormones and Antioxidant Enzymes.	Antioxidants (Basel)	13(9)		2024		
55620	39190007	Su L., Zhang J., Fan J., Li D., Zhao M., Wang Y., Pan H., Zhao L., Zhang X.	Antagonistic Mechanism Analysis of <i>Bacillus velezensis</i> JLU-1, a Biocontrol Agent of Rice Pathogen <i>Magnaporthe oryzae</i>.	J. Agric. Food Chem.	72(36)	19657-19666	2024		
55621	39217146	Deng S., Jiang S., Liu B., Zhong T., Liu Q., Liu J., Liu Y., Yin C., Sun C., Xu M.	ZmGDI&#x3b1;-hel counters the RBSDV-induced reduction of active gibberellins to alleviate maize rough dwarf virus disease.	Nat Commun	15(1)	7576	2024		
55622	39241632	He L., Chen T., Zhao C., Zhao L., Zhao Q., Yao S., Zhu Z., Lu K., Wang C., Zhang Y.	rst31 controls salt tolerance in rice (Oryza sativa) by regulating the cytokinin pathway.	Plant Physiol. Biochem.	216	109075	2024		
55623	39166886	Qin Z., Stubbings W.A., Chen M., Li F., Wu F., Wang S.	Co-exposure with Copper Alters the Uptake, Accumulation, Subcellular Distribution, and Biotransformation of Organophosphate Triesters in Rice (<i>Oryza sativa</i> L.).	J. Agric. Food Chem.	72(35)	19312-19322	2024		
55624	39207175	Zhang Y., Dong G., Zhang Y., Jiang Y., Chen F., Ruan B., Wu L., Yu Y.	BLA1 Affects Leaf Angles by Altering Brassinosteroid Biosynthesis in Rice (<i>Oryza sativa</i> L.).	J. Agric. Food Chem.	72(36)	19629-19643	2024		
55625	39238607	Fatima S., Rashid M., Hameed A.	Development of Rice Mutants with Enhanced Resilience to Drought Stress and Their Evaluation by Lab Assay, Field, and Multivariate Analysis.	Scientifica (Cairo)	2024	4373987	2024		
55626	39258300	Khunsanit P., Jitsamai N., Thongsima N., Chadchawan S., Pongpanich M., Henry I.M., Comai L., Suriya-Arunroj D., Budjun I., Buaboocha T.	QTL-Seq identified a genomic region on chromosome 1 for soil-salinity tolerance in F2 progeny of Thai salt-tolerant rice donor line "Jao Khao".	Front Plant Sci	15	1424689	2024		
55627	39273913	Zhang H., Hui G., Gao G., Ali I., Tang M., Chen L., Zhong X., Jiang L., Liang T., Zhang X.	Physiological and Proteomic Analysis of Various Priming on Rice Seed under Chilling Stress.	Plants (Basel)	13(17)		2024		
55628	39190055	de Oliveira Della Senta D., Cardoso G., Neis A., de Sousa GF., do Amaral DS., de Farias CJ., da Silva Pinto L.	Antifungal Effect of Bauhinia variegata Lectin (BvL) on Bipolaris oryzae.	Curr. Microbiol.	81(10)	329	2024		
55629	38972665	Li X., Lowey D., Lessard J., Caicedo A.L.	Comparative histology of abscission zones reveals the extent of convergence and divergence in seed Shattering in weedy and cultivated rice.	J. Exp. Bot.	75(16)	4837-4850	2024		
55630	39172243	Sahu G., Mishra S., Majumder S., Sharma N., Shaw B.P.	Overexpression of Orysa;KRP4 drastically reduces grain filling in rice.	Planta	260(4)	78	2024		
55631	39180364	Yan H., Ren Y., Zhang B., Jin J., Du F., Shan Z., Fu Y., Zhu Y., Wang X., Zhu C., Cai Y., Zhang J., Wang F., Zhang X., Wang R., Wang Y., Xu H., Jiang L., Liu X., Zhu S., Lin Q., Lei C., Cheng Z., Wang Y., Zhang W., Wan J.	SUBSTANDARD STARCH GRAIN7 regulates starch grain size and endosperm development in rice.	Plant Biotechnol. J.			2024		
55632	39204762	Prodhan Z.H., Samonte SOPB., Sanchez D.L., Talukder S.K.	Profiling and Improvement of Grain Quality Traits for Consumer Preferable Basmati Rice in the United States.	Plants (Basel)	13(16)		2024		
55633	39199266	Yi K., Ren Y., Zhang H., Lin B., Hao P., Hua S.	Can Rice Growth Substrate Substitute Rapeseed Growth Substrate in Rapeseed Blanket Seedling Technology? Lesson from Reactive Oxygen Species Production and Scavenging Analysis.	Antioxidants (Basel)	13(8)		2024		
55634	39137390	Wang Z., Shen Y., Cao L., Li H., Li H., Song L., Ma X., Dong C.	Enhancing the Catalytic Activity of Geranylgeranyl diphosphate synthase through Ancestral Sequence Reconstruction and Semirational Design.	J. Agric. Food Chem.	72(34)	19187-19196	2024		
55635	39224266	Mirara F., Dzidzienyo D.K., Mwangi M.	Nano-enhanced defense: Titanium-enriched Alginate-Bentonite coating augments <i>Bacillus amyloliquefaciens</i> D203 efficacy against <i>Magnaporthe oryzae</i> in Kenyan rice cultivation.	Heliyon	10(16)	e36141	2024		
55636	39205390	Mo T., Wang T., Sun Y., Kumar A., Mkumbwa H., Fang J., Zhao J., Yuan S., Li Z., Li X.	The chloroplast pentatricopeptide repeat protein RCN22 regulates tiller number in rice by affecting sugar levels via the tb1-RCN22-RbcL module.	Plant Commun		101073	2024		
55637	39181304	Yu Y., Ai T., Huang J., Jin L., Yu X., Zhu X., Sun J., Zhu L.	Metabolism of isodecyl diphenyl phosphate in rice and microbiome system: Differential metabolic pathways and underlying mechanisms.	Environ. Pollut.	361	124803	2024		
55638	39181885	He H., Leng Y., Cao X., Zhu Y., Li X., Yuan Q., Zhang B., He W., Wei H., Liu X., Xu Q., Guo M., Zhang H., Yang L., Lv Y., Wang X., Shi C., Zhang Z., Chen W., Zhang B., Wang T., Yu X., Qian H., Zhang Q., Dai X., Liu C., Cui Y., Wang Y., Zheng X., Xiong G., Zhou Y., Qian Q., Shang L.	The pan-tandem repeat map highlights multiallelic variants underlying gene expression and agronomic traits in rice.	Nat Commun	15(1)	7291	2024		
55639	39204761	Jin W., Li L., Ma G., Wei Z.	Halotolerant Microorganism-Based Soil Conditioner Application Improved the Soil Properties, Yield, Quality and Starch Characteristics of Hybrid Rice under Higher Saline Conditions.	Plants (Basel)	13(16)		2024		
55640	39166350	Ren N., Zhang G., Yang X., Chen J., Ni L., Jiang M.	MAPKKK28 functions upstream of the MKK1-MPK1 cascade to regulate abscisic acid responses in rice.	Plant Cell Environ.	47(12)	5140-5157	2024		
55641	39196772	Jim&#xe9;nez JC., Noorrohmah S., Suresh K., Zeisler-Diehl VV., Peralta Ogorek LL., Herzog M., Pellegrini E., Nagai K., Ashikari M., Takahashi H., Pedersen O., Schreiber L., Nakazono M.	Leaf Gas Film 1 promotes glycerol ester accumulation and formation of a tight root barrier to radial O2 loss in rice.	Plant Physiol.			2024		
55642	39273875	Song S., Li H., Lin S., Dong X., Tian R., Wu Z., Li Q., Li M., Zhang K., Liu X., Wan J., Liu L.	Heterologous Expression of Sunflower <i>HaHPT</i> and <i>HaTMT</i> Genes Enhances Rice-Grain Vitamin E Content.	Plants (Basel)	13(17)		2024		
55643	39201810	Deng R., Li Y., Feng N.J., Zheng D.F., Du Y.W., Khan A., Xue Y.B., Zhang J.Q., Feng Y.N.	Integrative Analyses Reveal the Physiological and Molecular Role of Prohexadione Calcium in Regulating salt tolerance in Rice.	Int J Mol Sci	25(16)		2024		
55644	39126552	Yang T., Dong J., Xiong X., Zhang L., Wang J., Hu H., Zhou L., Yang W., Ma Y., Fu H., Chen J., Li W., Nie S., Liu Z., Liu B., Wang F., Zhao J., Zhang S.	A Novel Function of GW5 on Controlling the Early Growth Vigor and its Haplotype Effect on Shoot Dry Weight and Grain Size in Rice (Oryza sativa L.).	Rice (N Y)	17(1)	49	2024		
55645	39128152	Shen L., Li Z., Huang X., Zhang P., Zhang L., Zhao W., Wen Y., Liu H.	Effects of polystyrene microplastic composite with florfenicol on photosynthetic carbon assimilation of rice (Oryza sativa L.) seedlings: Light reactions, carbon reactions, and molecular metabolism.	J. Hazard. Mater.	478	135470	2024		
55646	39166233	Go D., Lu B., Alizadeh M., Gazzarrini S., Song L.	Voice from both sides: a molecular dialogue between transcriptional activators and repressors in seed-to-seedling transition and crop adaptation.	Front Plant Sci	15	1416216	2024		
55647	39110723	Sugimura Y., Oikawa K., Sugihara Y., Utsushi H., Kanzaki E., Ito K., Ogasawara Y., Fujioka T., Takagi H., Shimizu M., Shimono H., Terauchi R., Abe A.	Impact of rice GENERAL REGULATORY FACTOR14h (GF14h) on low-temperature seed germination and its application to breeding.	PLoS Genet.	20(8)	e1011369	2024		
55648	39204657	Liu J., Yi Q., Dong G., Chen Y., Guo L., Gao Z., Zhu L., Ren D., Zhang Q., Li Q., Li J., Liu Q., Zhang G., Qian Q., Shen L.	Improving Rice Quality by Regulating the Heading Dates of Rice Varieties without Yield Penalties.	Plants (Basel)	13(16)		2024		
55649	39105539	Usha I., Pramesh D., Shrikanth B., Raghunandana A., Harish M.N., Prasannakumar M.K., Sharanabasav H., Manjunatha C.	Thymol-a plant-based monoterpenoid phenol compound of an essential oil for the management of sheath blight disease of rice.	Pest Manag. Sci.			2024		
55650	39277392	Ye S., Zhou S., Ma Y., Yang J., Shi X., Zhang R., Yang Z., Peng D., Ding Z.	Biocontrol activity and potential mechanism of Bacillus cereus G5 against Meloidogyne graminicola.	Pestic Biochem Physiol	204	106079	2024		
55651	39415973	Huang W., Tan C., Guo H.	Ethylene in fruits: beyond ripening control.	Hortic Res	11(10)	uhae229	2024		
55652	39127715	Vourlaki I.T., Ramos-Onsins SE., P&#xe9;rez-Enciso M., Castanera R.	Evaluation of deep learning for predicting rice traits using structural and single-nucleotide genomic variants.	Plant Methods	20(1)	121	2024		
55653	39093337	Lobo A.K.M., Orr D.J., Carmo-Silva E.	Regulation of Rubisco activity by interaction with chloroplast metabolites.	Biochem. J.	481(15)	1043-1056	2024		
55654	39107519	Liu Y., Zhu B., Tang J., Huang L., Chen G., Chen L., Bu S., Zhu H., Liu Z., Li Z., Meng L., Liu G., Wang S.	Epistatic interaction has the reverse effects with its constitutive quantitative trait loci.	Sci Rep	14(1)	18169	2024		
55655	38956872	Song S., Li Y., Qiu M., Xu N., Li B., Zhang L., Li L., Chen W., Li J., Wang T., Qiu Y., Gong M., Yu D., Dong H., Xia S., Pan Y., Yuan D., Li L.	Structural variations of a new fertility restorer gene, Rf20, underlie the restoration of wild abortive-type cytoplasmic male sterility in rice.	Mol Plant	17(8)	1272-1288	2024		
55656	39124285	He D., Zhou R., Huang C., Li Y., Peng Z., Li D., Duan W., Huang N., Cao L., Cheng S., Zhan X., Sun L., Wang S.	Improvement of Flowering Stage in <i>Japonica</i> Rice Variety Jiahe212 by Using CRISPR/Cas9 System.	Plants (Basel)	13(15)		2024		
55657	39102064	Alam M., Lou G., Abbas W., Osti R., Ahmad A., Bista S., Ahiakpa J.K., He Y.	Improving Rice Grain Quality Through Ecotype Breeding for Enhancing Food and Nutritional Security in Asia-Pacific Region.	Rice (N Y)	17(1)	47	2024		
55658	39095388	Thanwisai L., Siripornadulsil W., Siripornadulsil S.	Kosakonia oryziphila NP19 bacterium acts as a plant growth promoter and biopesticide to suppress blast disease in KDML105 rice.	Sci Rep	14(1)	17944	2024		
55659	39096632	Xu M., Ren M., Yao Y., Liu Q., Che J., Wang X., Xu Q.	Biochar decreases cadmium uptake in indica and japonica rice (Oryza sativa L.): Roles of soil properties, iron plaque, cadmium transporter genes and rhizobacteria.	J. Hazard. Mater.	477	135402	2024		
55660	39194907	Wonglom P., Ruangwong O.U., Poncheewin W., Arikit S., Riangwong K., Sunpapao A.	<i>Trichoderma</i>-Bioenriched Vermicompost Induces Defense Response and Promotes Plant Growth in Thai Rice Variety "Chor Khing".	J Fungi (Basel)	10(8)		2024		
55661	39202773	Yuan J., Wang Q., Wang X., Yuan B., Wang G., Wang F., Wang J.	Genetic and Physiological Insights into Salt Resistance in Rice through Analysis of Germination, Seedling Traits, and QTL Identification.	Life (Basel)	14(8)		2024		
55662	39154470	Li J., Xie W., Qi H., Sun S., Deng T., Tang Y., Qiu R.	Hexavalent chromium uptake in rice (Oryza sativa L.) mediated by sulfate and phosphate transporters OsSultr1;2 and OsPht1;1.	J. Hazard. Mater.	478	135559	2024		
55663	39203537	Tao H., Li X., Huo H., Cai Y., Cai A.	<i>Bacillus velezensis</i> Y6, a Potential and Efficient Biocontrol Agent in Control of Rice Sheath Blight Caused by <i>Rhizoctonia solani</i>.	Microorganisms	12(8)		2024		
55664	39150554	Husna A., Miah M.A., Zakaria L., Nor NMIM.	Fusarium andiyazi, a Pathogenic Species Associated with Rice Bakanae Disease in Malaysia.	Curr. Microbiol.	81(10)	308	2024		
55665	39164293	Sruthi P., Surendran U., Siddiqui M.H., Alamri S.	Understanding the leaf rolling of paddy and exploring its management options under aerobic rice.	Sci Rep	14(1)	19335	2024		
55666	39154678	Han R., Zhu T., Kong Z., Zhang X., Wang D., Liu J.	Understanding and manipulating the recognition of necrosis-inducing secreted protein 1 (NIS1) by BRI1-associated receptor kinase 1 (BAK1).	Int. J. Biol. Macromol.	278(Pt 3)	134821	2024		
55667	39150575	Dhillon H.K., Sharma M., Dhatt A.S., Meena O.P., Khosa J., Sidhu M.K.	Insights into cellular crosstalk regulating cytoplasmic male sterility and fertility restoration.	Mol. Biol. Rep.	51(1)	910	2024		
55668	39159794	Zhang G., Hua D., Wang Y., Xu J., He Y., Liu Y., Tang A., Liu H., Sun J.	Combined physicochemical and transcriptomic analyses reveal the effect of the OsGA20ox1 gene on the starch properties of germinated brown rice.	Int. J. Biol. Macromol.	278(Pt 4)	134849	2024		
55669	39142427	Huang S., Wang Q., Qi H., Liu Z., Tao Y., Fan Y., Wang Q., Li H., Wan Y.	Selenate simultaneously alleviated cadmium and arsenic accumulation in rice (Oryza sativa L.) via regulating transport genes.	Environ. Pollut.	359	124725	2024		
55670	39139125	Che J., Yamaji N., Wang S.F., Xia Y., Yang S.Y., Su Y.H., Shen R.F., Ma J.F.	OsHAK4 functions in retrieving sodium from the phloem at the reproductive stage of rice.	Plant J.	120(1)	76-90	2024		
55671	39194813	Horgan F.G., Almazan M.L.P., Bernal C.C., Dilla-Ermita CJ., Ardestani G., Mundaca E.A., Crisol-Mart&#xed;nez E.	Origins of Susceptibility to Insect Herbivores in High-Yielding Hybrid and Inbred Rice Genotypes.	Insects	15(8)		2024		
55672	39204674	Che W., Li X., Piao J., Zhang Y., Miao S., Wang H., Xie L., Jin F.	Biochar Improves Yield by Reducing Saline-Alkaline Stress, Enhancing Filling Rate of Rice in Soda Saline-Alkaline Paddy Fields.	Plants (Basel)	13(16)		2024		
55673	39154421	Wairich A., Wang Y., Werner B.T., Vaziritabar Y., Frei M., Wu L.B.	The role of ascorbate redox turnover in iron toxicity tolerance.	Plant Physiol. Biochem.	215	109045	2024		
55674	39136854	Zeng Y., Zi H., Wang Z., Min X., Chen M., Zhang B., Li Z., Lin W., Zhang Z.	Comparative Proteomic Analysis Provides New Insights into Improved Grain-filling in Ratoon Season Rice.	Rice (N Y)	17(1)	50	2024		
55675	39134555	Wang X., Wu H., Yu Z., Wu J., Lu C., Wei T., Chen Q.	Plant viruses exploit insect salivary GAPDH to modulate plant defenses.	Nat Commun	15(1)	6918	2024		
55676	39196357	Li D., He Z., Chen S., Chen J., Ding Z., Luo J., Li Z., Hu Y.	Alleviation of cadmium uptake in rice (Oryza sativa L.) by iron plaque on the root surface generated by Providencia manganoxydans via Fe(II) oxidation.	Arch. Microbiol.	206(9)	387	2024		
55677	39191251	He R., Lv Z., Li Y., Ren S., Cao J., Zhu J., Zhang X., Wu H., Wan L., Tang J., Xu S., Chen X.L., Zhou Z.	tRNA-m1A methylation controls the infection of Magnaporthe oryzae by supporting ergosterol biosynthesis.	Dev. Cell			2024		
55678	39167719	Kumar D., Venkadesan S., Prabha R., Begam S., Dutta B., Mishra D.C., Chaturvedi K.K., Jha G.K., Solanke A.U., Sevanthi A.M.	RiceMetaSys: Drought-miR, a one-stop solution for drought responsive miRNAs-mRNA module in rice.	Database (Oxford)	2024		2024		
55679	39169626	Zhang R., Tang X., He Y., Li Y., Wang W., Wang Y., Wang D., Zheng X., Qi Y., Zhang Y.	IsDge10 is a hypercompact TnpB nuclease that confers efficient genome editing in rice.	Plant Commun		101068	2024		
55680	39217932	Chen W., Zhang P., Liu D., Wang X., Lu S., Liu Z., Yang M., Deng T., Chen L., Qi H., Xiao S., Chen Q., Qiu R., Xie L.	OsPLD&#x3b1;1 mediates cadmium stress response in rice by regulating reactive oxygen species accumulation and lipid remodeling.	J. Hazard. Mater.	479	135702	2024		
55681	39208439	Abbas W., Sun Q., Cui Y., Shalmani A., Xu P., Fan Y., Zhang D., Wu M.E., Li X., Li Y.	The quantitative trait locus GWY10 controls rice grain width and yield.	Plant Physiol.			2024		
55682	39213945	Mishra V., Tripathi D.K., Rai P., Sharma S., Singh V.P.	Regulation of arsenate stress by nitric oxide and hydrogen sulfide in Oryza sativa seedlings: Implication of sulfur assimilation, glutathione biosynthesis, and the ascorbate-glutathione cycle and its genes.	Plant Physiol. Biochem.	215	109001	2024		
55683	39173375	Chen Y., Cui B., Dou Y., Fan H., Fang Y., Wang L., Duan Z.	Characteristics of biofilms on polylactic acid microplastics and their inhibitory effects on the growth of rice seedlings: A comparative study of petroleum-based microplastics.	J. Hazard. Mater.	478	135469	2024		
55684	39116108	Sylvain Bonfanti L., Arbelet-Bonnin D., Filaine F., Lalanne C., Renault A., Meimoun P., Laurenti P., Gr&#xe9;sillon E., Bouteau F.	Toxic and signaling effects of the anaesthetic lidocaine on rice cultured cells.	Plant Signal Behav	19(1)	2388443	2024		
55685	39166241	Li K., Hassan M.A., Guo J., Zhao X., Gan Q., Lin C., Ten B., Zhou K., Li M., Shi Y., Ni D., Song F.	Analysis of genome-wide association studies of low-temperature germination in Xian and Geng rice.	Front Plant Sci	15	1404879	2024		
55686	39146914	Shabab Z., Sarada D.L.	24-Epibrassinolide mitigates arsenate stress in seedlings of Oryza sativa (IR-20) via the induction of phenylpropanoid pathway.	Plant Physiol. Biochem.	215	109023	2024		
55687	38850939	Yang L., Chen H., Du P., Miao X., Huang S., Cheng D., Xu H., Zhang Z.	Inhibition mechanism of Rhizoctonia solani by pectin-coated iron metal-organic framework nanoparticles and evidence of an induced defense response in rice.	J. Hazard. Mater.	474	134807	2024		
55688	39201698	Zhang Y., Du A., Tong L., Yan G., Lu L., Yin Y., Fu X., Yang H., Li H., Huang W., Cai D., Song Z., Zhang X., He Y., Tu S.	Genome Resequencing for Autotetraploid Rice and Its Closest Relatives Reveals Abundant Variation and High Potential in Rice Breeding.	Int J Mol Sci	25(16)		2024		
55689	39162030	Li Z., Jia F., Li L.L., Kong C.H.	Root-secreted (-)-loliolide mediates chemical defense in rice and wheat against pests.	Pest Manag. Sci.			2024		
55690	39152725	Yu S., Gong L., Han Y.C., Yang L., Li J., Hoffmann A.A., Luo G.H., Yuan G.R., Fang J.C., Ji R.	Oral secretions from striped stem borer (Chilo suppressalis) induce defenses in rice.	Pest Manag. Sci.			2024		
55691	39136883	Ruan B., Wu H., Jiang Y., Qiu J., Chen F., Zhang Y., Qiao Y., Tang M., Ma Y., Qian Q., Wu L., Yu Y.	SPL50 Regulates Cell Death and Resistance to Magnaporthe Oryzae in Rice.	Rice (N Y)	17(1)	51	2024		
55692	39151802	Yan Y., Zhu X., Qi H., Wang Y., Zhang H., He J.	Rice seed storability: From molecular mechanisms to agricultural practices.	Plant Sci.	348	112215	2024		
55693	39201513	Shen C., Yu S., Tan X., Luo G., Yu Z., Ju J., Yang L., Huang Y., Li S., Ji R., Zhao C., Fang J.	Infestation of Rice Striped Stem Borer (<i>Chilo suppressalis</i>) Larvae Induces Emission of Volatile Organic Compounds in Rice and Repels Female Adult Oviposition.	Int J Mol Sci	25(16)		2024		
55694	39140701	Leipner J., Ruta N.	Discovery of anisiflupurin, an inhibitor of cytokinin dehydrogenase that mitigates heat-induced yield reduction in rice.	Pest Manag. Sci.			2024		
55695	39134930	Qi T., Wang M., Wang P., Wang L., Wang J.	Insights into heterosis from histone modifications in the flag leaf of inter-subspecific hybrid rice.	BMC Plant Biol.	24(1)	767	2024		
55696	38968126	Zdrza&#x142;ek R., Xi Y., Langner T., Bentham A.R., Petit-Houdenot Y., De la Concepcion JC., Harant A., Shimizu M., Were V., Talbot N.J., Terauchi R., Kamoun S., Banfield M.J.	Bioengineering a plant NLR immune receptor with a robust binding interface toward a conserved fungal pathogen effector.	Proc. Natl. Acad. Sci. U.S.A.	121(28)	e2402872121	2024	HIPP43	OsHMP3, HMP3, OsHMP03, OsHIPP43, OsaHIP43, HIP43 
55697	38972556	Hu Y., Tian C., Feng Y., Ma W., Zhang Y., Yang Q., Zhang X.	Transgenic early japonica rice: Integration and expression characterization of stem borer resistance Bt gene.	Gene	927	148753	2024		
55698	38963845	Wei X., Chen M., Zhang Q., Gong J., Liu J., Yong K., Wang Q., Fan J., Chen S., Hua H., Luo Z., Zhao X., Wang X., Li W., Cong J., Yu X., Wang Z., Huang R., Chen J., Zhou X., Qiu J., Xu P., Murray J., Wang H., Xu Y., Xu C., Xu G., Yang J., Han B., Huang X.	Genomic investigation of 18,421 lines reveals the genetic architecture of rice.	Science	385(6704)	eadm8762	2024		
55699	39068998	Rohilla M., Mazumder A., Chowdhury D., Bhardwaj R., Kumar Mondal T.	Understanding natural genetic variation for nutritional quality in grain and identification of superior haplotypes in deepwater rice genotypes of Assam, India.	Gene	928	148801	2024		
55700	39096640	Guan M.Y., Cao Z., Xia Y.C., Xv P., Lin X.Y., Chen M.X.	OsCOPT7 is involved in copper accumulation and transport through xylem.	J. Hazard. Mater.	477	135245	2024		
55701	38888146	Wang W., Wang H., Ren X., Zhang W., Li Q.	Organophosphate esters uptake, translocation and accumulation in rice (<i>Oryza sativa</i> L.): impacts of lipid transporters and chemical properties.	Environ Sci Process Impacts	26(7)	1171-1183	2024		
55702	39032651	Guercio A.M., Gilio A.K., Pawlak J., Shabek N.	Structural insights into rice KAI2 receptor provide functional implications for perception and signal transduction.	J. Biol. Chem.	300(8)	107593	2024	D3,SMAX1,KAI2	d3, dwf3, D3/OsMAX2, Os_F0760, SOL1, OsORE9, ORE9, MAX2, OsRFPH2-10, RFPH2-10, OsD3,  OsFBL27, FBL27,OsSMAX1,D14L, OsD14L, OsKAI2
55703	39003470	Unda F., de Vries L., Karlen S.D., Rainbow J., Zhang C., Bartley L.E., Kim H., Ralph J., Mansfield S.D.	Enhancing monolignol ferulate conjugate levels in poplar lignin via OsFMT1.	Biotechnol Biofuels Bioprod	17(1)	97	2024	AT5	OsAT5, OsAt5, OsFMT1, FMT1, OsFMT/AT5, OsFMT, FMT
55704	39012205	Lee S.J., Kim Y., Kang K., Yoon H., Kang J., Cho S.H., Paek N.C.	rice CRYPTOCHROME-INTERACTING BASIC HELIX-LOOP-HELIX 1-LIKE interacts with OsCRY2 and promotes flowering by upregulating&#xa0;Early heading date 1.	Plant Cell Environ.	47(12)	4498-4515	2024		
55705	39013913	Li X.K., Huang Y.H., Zhao R., Cao W.Q., Lu L., Han J.Q., Zhou Y., Zhang X., Wu W.A., Tao J.J., Wei W., Zhang W.K., Chen S.Y., Ma B., Zhao H., Yin C.C., Zhang J.S.	Membrane protein MHZ3 regulates the on-off switch of ethylene signaling in rice.	Nat Commun	15(1)	5987	2024	CTR2,EIN2,ETR2,MHZ3,ERS2	OsCTR2,OsEIN2, MHZ7/OsEIN2, OsEIN2/MHZ7, MHZ7 ,etr2, OsPK1, PK1, ERL1, OsETR2, OsERL1, OS-ETR2, OsERS3,OsMHZ3,OS-ERS2, OsERS2, OsERS2a, OsERS2b, OsERS2c
55706	38997294	Chang Y., Fang Y., Liu J., Ye T., Li X., Tu H., Ye Y., Wang Y., Xiong L.	Stress-induced nuclear translocation of ONAC023 improves drought and heat tolerance through multiple processes in rice.	Nat Commun	15(1)	5877	2024	REM1.5,YGL9,FKBP20-1B,_,PIP2;7,TMS5	OsREM1.5,OscpSRP43, cpSRP43, PGL3, OsPGL3, Os YGL9,OsFKBP20-1b,OsSF3B1, SF3B1,OsPIP2;7, PIP2.7, PIP2-7, OsPIP2-6, OsPIP-3A, PIP-3A,tms5, NAC18, ONAC023, ONAC23, NAC23, TMS5/ONAC023, OsEnS-30
55707	39004308	Kim J.S., Chae S., Jo J.E., Kim K.D., Song S.I., Park S.H., Choi S.B., Jun K.M., Shim S.H., Jeon J.S., Lee G.S., Kim Y.K.	osmyb14, an R2R3-MYB transcription factor, regulates plant height through the control of hormone metabolism in rice.	Mol. Cells	47(8)	100093	2024	GH3-2,GNP1,MYB14,SD1	OsGH3-2, OsGH3.2, GH3.2,GA20OX1, OsGA20ox1, 20ox1, GA20ox-1, ga20ox1, Os20ox, C20OX2, OsGA20ox2, OsGA20ox-1, GA20ox1, OsGNP1,OsMYB14, OsJAdMYB1, JAdMYB1, Os2R_MYB12, 2R_MYB12 ,sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2, OsPHQ1, OsPHq1, PHq1
55708	39010102	Wang J.Y., Cai Y.Y., Li L., Zhu X.M., Shen Z.F., Wang Z.H., Liao J., Lu J.P., Liu X.H., Lin F.C.	Dihydroorotase MoPYR4 is required for development, pathogenicity, and autophagy in rice blast fungus.	Cell Commun. Signal	22(1)	362	2024		
55709	39029307	Asif S., Kim N., Jan R., Asaf S., Lubna, Farooq M., Khan W., Khan Z., Kim E.G., Jang Y.H., Park J.R., Zhao D.D., Kim K.M.	Determining arsenic stress tolerance genes in rice (Oryza sativa L.) via genomic insights and QTL mapping with double haploid lines.	Plant Physiol. Biochem.	214	108941	2024		
55710	39007057	Jinlong H., Yu Z., Ruizhi W., Xiaoyu W., Zhiming F., Qiangqiang X., Nianbing Z., Yong Z., Haiyan W., Hongcheng Z., Jinyan Z.	A genome-wide association study of panicle blast resistance to <i>Magnaporthe oryzae</i> in rice.	Mol. Breed.	44(7)	49	2024		
55711	39003743	Harshith C.Y., Pal A., Chakraborty M., Nair A., Raju S., Shivaprasad P.V.	Wound-induced small-peptide-mediated signaling cascade, regulated by OsPSKR, dictates balance between growth and defense in rice.	Cell Rep	43(7)	114515	2024		
55712	38981001	Jiang M., Zhang H., Song Y., Chen J., Bai J., Tang J., Wang Q., Fotopoulos V., Zhu Q.H., Yang R., Li R.	Transcription factor OsbZIP10 modulates rice grain quality by regulating OsGIF1.	Plant J.	119(5)	2181-2198	2024		
55713	38972041	Zhu X., Wang M., Huang Z., Chen M., Xu P., Liao S., Gao Y., Zhao Y., Chen H., He J., Luo Y., Wei X., Zhu L., Liu C., Huang J., Zhao X., Zhao J., Zhang Z., Zhuang C., Liu Z., Zhou H.	The OsMYC2-JA feedback loop regulates diurnal flower-opening time via cell wall loosening in rice.	Plant J.			2024		
55714	39062681	Nie F., Wang M., Liu L., Ma X., Zhao J.	Genome-Wide Identification and Bioinformatics Analysis of the FK506 Binding Protein Family in Rice.	Genes (Basel)	15(7)		2024	FKBP62A,FKBP59,FKBP18,FKBP73,FKBP12,FKBP62B,FKBP17-2,FKBP15-2,FKBP17-1,FKBP57,FKBP42B,FKBP13 ,FKBP20-1A,TIG,BIP122,FKBP53,FKBP42A,FKBP75,FKBP46,FKBP44,FKBP20-2,FKBP16-3,FKBP65D,FKBP19,FKBP72,FKBP16-4,FKBP16-1,FKBP20-1B,FKBP15-1,FKBP16-2	OsFKBP62a, FKBP62a, OsFKBP64, FKBP64,OsFKBP59, OsFKBP15-3, FKBP15-3 ,OsFKBP18,OsFKBP73, OsFKBP65a, FKBP65a ,OsFKBP12,OsFKBP62b, OsFKBP65, FKBP62b, FKBP65,OsFKBP17-2,OsFKBP15-2,OsFKBP17-1,OsFKBP57, OsFKBP65b, FKBP65b,OsFKBP42b, OsFKBP42a, FKBP42a ,OsFKBP13,OsFKBP20-1a, OsFKBP20,OsTIG,OsFKBP58, FKBP58, OsFKBP53a, FKBP53a, OsBIP122,OsFKBP53, OsFKBP53b, FKBP53b, OsFKBP43, FKBP43 ,OsFKBP42a, OsFKBP42b, FKBP42b ,OsFKBP62c, FKBP62c, OsFKBP75,OsFKBP46, OsFKBP65c, FKBP65c,OsFKBP44, OsFKBP53b, FKBP53b ,OsFKBP20-2,OsFKBP16-3,OsFKBP65d, FKBP65d,OsFKBP19,OsFKBP72,OsFKBP16-4,OsFKBP16-1,OsFKBP20-1b,OsFKBP15-1,OsFKBP16-2
55715	38978968	Zheng H., Tang W., Yang T., Zhou M., Guo C., Cheng T., Cao W., Zhu Y., Zhang Y., Yao X.	Grain Protein Content Phenotyping in Rice via Hyperspectral Imaging Technology and a Genome-Wide Association Study.	Plant Phenomics	6	0200	2024	RECA3,MTSSB1L	RecA, OsRECA3,OsmtSSB1L, mtSSB1L
55716	38991642	Guo R., Li S., Gao Y.Q., He J.T., Wang H.Y., Chen J., Huang J., Shen R.F., Zhu X.F.	A novel OsGST gene encoding 9glutathione reductase negatively regulates cadmium accumulation in rice.	J. Hazard. Mater.	476	135126	2024		
55717	39049859	Peng B., Liu Y., Qiu J., Peng J., Sun X., Tian X., Zhang Z., Huang Y., Pang R., Zhou W., Zhao J., Sun Y., Wang Q.	<i>OsG6PGH1</i> affects various grain quality traits and participates in the salt stress response of rice.	Front Plant Sci	15	1436998	2024	6PGDH1,GLUA3,GLUA2,ALAAT,CDP5.1,GLUB1A,_,CYSR10,GLUA1,GLUBX,AAP10D	Os6PGDH1, Os6PGDH, 6PGDH,Glua3*, GLUA-3, GT22, GT3, Glu21, GluA-3, OsEnS-47, EnS-47, GLU3,Glua2*, Glua2, GLUA-2, GluA-2, Glu20, GluA2, OsEnS-137,alaAT, ALT-1, OsAlaAT1, AlaAT1,OsCDP5.1,GluB, GluB-1a, OsGluB-1a, GluB-1b, GluB1, OsGluB1,GLU4, OsGLU4,Prol-01, CysR10, OsCysR10, crP10, pro10.1, Ospro10.1,Glua1*, Glua1, GLUA-1, GluA-1, GluA1, Glu19, OsEnS-16,OsGluBX, OsGluBX-J, OsGluBX-I, OsEnS-31, EnS-31, GLU2.1, GluB7, OsGluB7, GluB4, OsGluB4,OsAAP10D, OsAAP6, AAP6, qPC1
55718	39065435	Xu Y., Tu Y., Feng J., Peng Z., Peng Y., Huang J.	Arbuscular Mycorrhizal Fungi Mediate the Acclimation of Rice to Submergence.	Plants (Basel)	13(14)		2024	KAI2,SUB1A,CERK1,CIPK15	D14L, OsD14L, OsKAI2,Sub1A, Sub1A-1, Sub1A-2, OsSUB1A,OsCERK1, OsLysM-RLK9, Os-CERK1, Os-LysM-RLK9, OsLysMRLK9, OsCERK1/OsLYK9, OsLYK9, LYK9,OsCIPK15, OsSnRK3.31, SnRK3.31
55719	38490694	Luo S., Zheng S., Li Z., Cao J., Wang B., Xu Y., Chong K.	Monosaccharide transporter OsMST6 is activated by transcription factor OsERF120 to enhance chilling tolerance in rice seedlings.	J. Exp. Bot.	75(13)	4038-4051	2024		
55720	38996675	Zhu Q.Y., Ren M.L., Jiang Y.J., He C., Ding Z.J., Zheng S.J., Wang Z.G., Jin C.W.	Co-mutation of OsLPR1/3/4/5 provides a promising strategy to minimize Cd contamination in rice grains.	J. Hazard. Mater.	476	135165	2024		
55721	38981207	Koc Y.E., Aycan M., Mitsui T.	Exogenous proline suppresses endogenous proline and proline-production genes but improves the salinity tolerance capacity of salt-sensitive rice by stimulating antioxidant mechanisms and photosynthesis.	Plant Physiol. Biochem.	214	108914	2024		
55722	39053057	Yin J., Zhu T., Li X., Yin X., Xu J., Xu G.	Polystyrene nanoplastics induce cell type-dependent secondary wall reinforcement in rice (Oryza sativa) roots and reduce root hydraulic conductivity.	J. Hazard. Mater.	477	135309	2024		
55723	39041957	Li Y.B., Liu C., Shen N., Zhu S., Deng X., Liu Z., Han L.B., Tang D.	The actin motor protein OsMYA1 associates with OsExo70H1 and contributes to rice secretory defense by modulating OsSyp121 distribution.	J Integr Plant Biol	66(9)	2058-2075	2024		
55724	39044689	Xue F., Zhang J., Wu D., Sun S., Fu M., Wang J., Searle I., Gao H., Liang W.	m6A demethylase OsALKBH5 is required for double-strand break formation and repair by affecting mRNA stability in rice meiosis.	New Phytol.			2024		
55725	39041463		Correction to 'OsJRL negatively regulates rice cold tolerance via interfering phenylalanine metabolism and flavonoid biosynthesis'.	Plant Cell Environ.	47(9)	3668	2024		
55726	39056291	Yan Y., Wang H., Bi Y., Wang J., Li D., Song F.	A distinct protein posttranslational modifications-linked OsATL32-OsPPKL2-OsGSK2 loop modulates rice immunity against blast disease.	New Phytol.	243(6)	2332-2350	2024		
55727	39073105	Li F., Wu L., Li X., Chai Y., Ruan N., Wang Y., Xu N., Yu Z., Wang X., Chen H., Lu J., Xu H., Xu Z., Chen W., Xu Q.	Dissecting the molecular basis of the ultra-large grain formation in rice.	New Phytol.	243(6)	2251-2264	2024		
55728	39076776	Jiang X., Yu S., Huang Y., Huang J., Liu S., Yang D., Fu J., He H., Fu H.	Identification of the <i>RRM1</i> gene family in rice (<i>Oryza sativa</i>) and its response to rice blast.	PeerJ	12	e17668	2024		
55729	39069009	Jin F., Huang W., Xie P., Wu B., Zhao Q., Fang Z.	Amino acid permease OsAAP12 negatively regulates rice tillers and grain yield by transporting specific amino acids to affect nitrogen and cytokinin pathways.	Plant Sci.	347	112202	2024		
55730	39080288	Hu S., Chen Y., Qian C., Ren H., Liang X., Tao W., Chen Y., Wang J., Dong Y., Han J., Ouyang X., Huang X.	Nuclear accumulation of rice UV-B photoreceptors is UV-B- and OsCOP1-independent for UV-B responses.	Nat Commun	15(1)	6396	2024	PPS,UVR8B,UVR8A	OsWD40-55, OsCOP1, COP1, YEL, OsYEL, OsPPS, COP1-1, OsCOP1-1,  OsRING347, RING347,OsUVR8b, UVR8b, OsRCC1-2, RCC1-2, OsGEF9, GEF9,OsUVR8a, UVR8a, OsRCC1-1, RCC1-1, OsGEF10, GEF10
55731	39070908	Yan F., Zhang G., Liu L., Wang F., Zhao H., Huang Z., Niu Y.	The decrease in panicle number is the main reason for the yield reduction of japonica rice caused by 1,2,4-trichlorobenzene stress.	Front Plant Sci	15	1425945	2024		
55732	39025063	Xu X., Shi X., You X., Hao Z., Wang R., Wang M., He F., Peng S., Tao H., Liu Z., Wang J., Zhang C., Feng Q., Wu W., Wang G.L., Ning Y.	A pair of E3 ubiquitin ligases control immunity and flowering by targeting different ELF3 proteins in rice.	Dev. Cell	59(20)	2731-2744.e4	2024		
55733	39013915	Devanna B.N., Sucharita S., Sunitha N.C., Anilkumar C., Singh P.K., Pramesh D., Samantaray S., Behera L., Katara J.L., Parameswaran C., Rout P., Sabarinathan S., Rajashekara H., Sharma T.R.	Refinement of rice blast disease resistance QTLs and gene networks through meta-QTL analysis.	Sci Rep	14(1)	16458	2024		
55734	39004728	Thongnok S., Siripornadulsil W., Thanwisai L., Siripornadulsil S.	As(III)-oxidizing and plant growth-promoting bacteria increase the starch biosynthesis-related enzyme activity, 2-AP levels, and grain quality of arsenic-stressed rice plants.	BMC Plant Biol.	24(1)	672	2024		
55735	39091314	Jan R., Asif S., Asaf S., Lubna, Khan Z., Khan W., Kim K.M.	Gamma-aminobutyric acid treatment promotes resistance against <i>Sogatella furcifera</i> in rice.	Front Plant Sci	15	1419999	2024		
55736	39062950	Wang X., Ma J., He F., Wang L., Zhang T., Liu D., Xu Y., Li F., Feng X.	A Study on the Functional Identification of Overexpressing Winter Wheat Expansin Gene <i>TaEXPA7-B</i> in Rice under Salt Stress.	Int J Mol Sci	25(14)		2024		
55737	38995679	Wang J., Liao Z., Jin X., Liao L., Zhang Y., Zhang R., Zhao X., Qin H., Chen J., He Y., Zhuang C., Tang J., Huang S.	Xanthomonas oryzae pv. oryzicola effector Tal10a directly activates rice OsHXK5 expression to facilitate pathogenesis.	Plant J.	119(5)	2423-2436	2024		
55738	39062872	Ruan B., Jiang Y., Ma Y., Zhou M., Chen F., Zhang Y., Yu Y., Wu L.	Characterization of the <i>ddt1</i> Mutant in Rice and Its Impact on plant height Reduction and Water Use Efficiency.	Int J Mol Sci	25(14)		2024	SD1,SD37,SLR1	sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2, OsPHQ1, OsPHq1, PHq1,OsCYP96B4, CYP96B4, CYP96B4/SD37, OsDSS1, DSS1, CFL2, OsCFL2, CFL2/OsCYP96B4, BSHT1, OsBSHT1, BSHT1/OsCYP96B4, DDT1, OsDDT1,slr1-1, slr1, slr, GAI, OsGAI, OsSLR1, Os SLR1, OsRGA1, OsGRAS-18, OsGRAS-18, GRAS-18, GRAS18, SLR-1
55739	39070911	Mohanavel V., Muthu V., Kambale R., Palaniswamy R., Seeli P., Ayyenar B., Rajagopalan V., Manickam S., Rajasekaran R., Rahman H., Nallathambi J., Swaminathan M., Chellappan G., Vellingiri G., Muthurajan R.	Marker-assisted breeding accelerates the development of multiple-stress-tolerant rice genotypes adapted to wider environments.	Front Plant Sci	15	1402368	2024		
55740	39007434	Deng Q., Zhang X., Chen H., Hao M., Li R., Lou Y., Lu J.	The jasmonate pathway and water loss in rice leaves induced by a stem-borer inhibit leaf-feeder growth.	Plant Cell Environ.	47(11)	4416-4431	2024		
55741	39033149	Sandhu N., Singh J., Pruthi G., Verma V.K., Raigar O.P., Bains N.S., Chhuneja P., Kumar A.	SpeedyPaddy: a revolutionized cost-effective protocol for large scale offseason advancement of rice germplasm.	Plant Methods	20(1)	109	2024		
55742	39025062	Yi H., Shi H., Mao W., Yin J., Ma Y., Xu L., Jing L., He M., Zhu X., Lu X., Xiong Q., Tang Y., Hou Q., Song L., Wang L., Li W., Yu H., Chen X., Li J., Wang J.	E3 ubiquitin ligase IPI1 controls rice immunity and flowering via both E3 ligase-dependent and -independent pathways.	Dev. Cell	59(20)	2719-2730.e4	2024		
55743	39084780	Chen Z.J., Li S.Y., Qu Y.N., Ai G., Wang Y.H., Pan D.J., Wang H.W., Lu D., Liu X.L.	Comprehensive analyses show the enhancement effect of exogenous melatonin on fluroxypyr-meptyl multiple phase metabolisms in Oryza sativa for reducing environmental risks.	Pestic Biochem Physiol	203	106021	2024		
55744	39277354	Liu S., Li X., Zhang H., Qin S., Liang L., Liao Y., Zhu J., Tan H., Zhao F.	Comprehensive study of chiral herbicide flusulfinam uptake, translocation, degradation, and subcellular distribution in rice (Oryza sativa L.).	Pestic Biochem Physiol	204	106018	2024		
55745	38977989	Zhou S., Wu T., Li X., Wang S., Hu B.	Identification of candidate genes controlling cold tolerance at the early seedling stage from Dongxiang wild rice by QTL mapping, BSA-Seq and RNA-Seq.	BMC Plant Biol.	24(1)	649	2024		
55746	38980229	Cao Z., Sun W., Qiao D., Wang J., Li S., Liu X., Xin C., Lu Y., Gul S.L., Wang X.C., Chen Q.J.	PE6c greatly enhances prime editing in transgenic rice plants.	J Integr Plant Biol	66(9)	1864-1870	2024		
55747	38571323	Hu Y., Ma M., Zhao W., Niu P., Li R., Luo J.	Identification of hub genes involved in gibberellin-regulated elongation of coleoptiles of rice seeds germinating under submerged conditions.	J. Exp. Bot.	75(13)	3862-3876	2024		
55748	38779909	Zong W., Guo X., Zhang K., Chen L., Liu Y.G., Guo J.	Photoperiod and temperature synergistically regulate heading date and regional adaptation in rice.	J. Exp. Bot.	75(13)	3762-3777	2024		
55749	38999709	Saighani K., Kashiwagi M., Habibi S., Simpson C.G., Yamada T., Kanekatsu M.	Screening of NIAS World Rice Core Collection for Seeds with Long Longevity as Useful Potential Breeding Materials Focusing on the Stability of Embryonic RNAs.	Plants (Basel)	13(13)		2024		
55750	38980661	Premachandran K., Shyu D.J.H., Vattikuti J.L., Yanamadala S., Srinivasan T.S.	Expression and Functional Characterization of Oryzacystatin II Protein from <i>Oryza sativa L.</i> Indica Rice and Its Potential Role as a Bioinsecticide Against Major Insects of Rice.	J. Agric. Food Chem.	72(29)	16378-16389	2024		
55751	38961133	Chen H., Huang X., Chen H., Zhang S., Fan C., Fu T., He T., Gao Z.	Effect of silicon spraying on rice photosynthesis and antioxidant defense system on cadmium accumulation.	Sci Rep	14(1)	15265	2024		
55752	38935581	Wang H., Planche L., Shchur V., Nielsen R.	Selfing Promotes Spread and Introgression of Segregation Distorters in Hermaphroditic Plants.	Mol. Biol. Evol.	41(7)		2024		
55753	38969140	Chen J., Wang Y.	Understanding the salinity resilience and productivity of halophytes in saline environments.	Plant Sci.	346	112171	2024		
55754	39051263	Wang Y., Gong C., Liu L., Wang T.	The invertase gene PWIN1 confers chilling tolerance of rice at the booting stage via mediating pollen development.	Plant Cell Environ.	47(12)	4651-4663	2024		
55755	38470076	Colleoni P.E., van Es SW., Winkelmolen T., Immink R.G.H., van Esse GW.	flowering time genes branching out.	J. Exp. Bot.	75(14)	4195-4209	2024		
55756	39039384	Lan Y., Song Y., Liu M., Luo D.	Genome-wide identification, phylogenetic, structural and functional evolution of the&#xa0;core components of ABA signaling in plant species: a focus on rice.	Planta	260(3)	58	2024		
55757	39054445	Lv X., Li Q., Deng X., Ding S., Sun R., Chen S., Yun W., Dai C., Luo B.	Fulvic acid application increases rice seedlings performance under low phosphorus stress.	BMC Plant Biol.	24(1)	703	2024		
55758	39047736	Chen Y., Hua X., Li S., Zhao J., Yu H., Wang D., Yang J., Liu L.	Aromatic compound 2-acetyl-1-pyrroline coordinates nitrogen assimilation and methane mitigation in fragrant rice.	Curr. Biol.	34(15)	3429-3438.e4	2024		
55759	39052425	Fan J., Ma X., Zou J., Li S., Liu Y., Guo D., Jiang W., Li X., Liu F., Tan L.	LATA1, a RING E3 ligase, modulates the tiller angle by affecting auxin asymmetric distribution and content in rice.	Plant J.	120(2)	429-444	2024		
55760	39059272	Basit F., Abbas S., Sheteiwy M.S., Bhat J.A., Alsahli A.A., Ahmad P.	Deciphering the alleviation potential of nitric oxide, for low temperature and chromium stress via maintaining photosynthetic capacity, antioxidant defence, and redox homeostasis in rice (Oryza sativa).	Plant Physiol. Biochem.	214	108957	2024		
55761	39124172	Shen Y., Huang D., Zhang Z., Fan Y., Sheng Z., Zhuang J., Shen B., Zhu Y.	Dissection and Fine-Mapping of Two QTL Controlling grain size Linked in a 515.6-kb Region on Chromosome 10 of Rice.	Plants (Basel)	13(15)		2024		
55762	39049493	Yao Q., Shen R., Shao Y., Tian Y., Han P., Zhang X., Zhu J.K., Lu Y.	Efficient and multiplex gene upregulation in plants through CRISPR-Cas-mediated knockin of enhancers.	Mol Plant	17(9)	1472-1483	2024		
55763	39070774	Guo H., Guo Y., Zeng Y., Zou A., Khan N.U., Gu Y., Li J., Sun X., Zhang Z., Zhang H., Peng Y., Li H., Wu Z., Yuan P., Li J., Li Z.	QTL detection and candidate gene identification of <i>qCTB1</i> for cold tolerance in the Yunnan plateau landrace rice.	Mol. Breed.	44(8)	50	2024		
55764	39049570	Mimura M., Ono S., Somashekar H., Nonomura K.I.	Impact of protein domains on the MEL2 granule, a cytoplasmic ribonucleoprotein complex maintaining faithful meiosis progression in rice.	New Phytol.	243(6)	2235-2250	2024		
55765	39053314	Li Q., Hou Y., Wang Q., Pan X., Sun Y., Zhu X., Li H., Guo M., Gao Y.	Phytochrome interacting factor ZmPIF6 simultaneously enhances chilling tolerance and grain size in rice.	Plant Physiol. Biochem.	214	108954	2024		
55766	39053315	Liu J., Fan X., Ni J., Cai M., Cai D., Jiang Y., Mo A., Miran W., Peng T., Long X., Yang F.	Mitigation of uranium toxicity in rice by Sphingopyxis sp. YF1: Evidence from growth, ultrastructure, subcellular distribution, and physiological characteristics.	Plant Physiol. Biochem.	214	108958	2024		
55767	39125803	Adhikari P.B., Kasahara R.D.	An Overview on MADS box Members in Plants: A Meta-Review.	Int J Mol Sci	25(15)		2024		
55768	39068222	Li J., Li B., Yang Y., Zhang S., Chen S., You L., Liu Y., Gao J.	Positive feed-forward regulation of nitrate uptake by rice roots and its molecular mechanism.	Sci Rep	14(1)	17284	2024		
55769	39125774	Zeng Y., Nong B., Xia X., Zhang Z., Wang Y., Xu Y., Feng R., Guo H., Liang Y., Chen C., Liang S., Jiang X., Yang X., Li D.	Metabolome and Transcriptome Unveil the Correlated Metabolites and Transcripts with 2-acetyl-1-pyrroline in Fragrant Rice.	Int J Mol Sci	25(15)		2024		
55770	39124208	Chen J., Yang S., Fu M., He Y., Zeng H.	Abscisic Acid Regulates the Occurrence and Recovery of the Striped Leaf Phenotype in Response to Lacking Light at the Base of Sheath in Rice by Modulating Carbohydrate Metabolism.	Plants (Basel)	13(15)		2024		
55771	39060652	Tao Z., Miao X., Shi Z.	HD-ZIP IV Gene ROC1 Regulates leaf rolling and Drought Response Through Formation of Heterodimers with ROC5 and ROC8 in Rice.	Rice (N Y)	17(1)	45	2024		
55772	39125819	Jiang C., Wang Y., He Y., Peng Y., Xie L., Li Y., Sun W., Zhou J., Zheng C., Xie X.	Identification and Characterization of miRNAs and lncRNAs Associated with Salinity Stress in Rice Panicles.	Int J Mol Sci	25(15)		2024		
55773	39124230	Kamolsukyeunyong W., Dabbhadatta Y., Jaiprasert A., Thunnom B., Poncheewin W., Wanchana S., Ruanjaichon V., Toojinda T., Burns P.	Genome-Wide Association Analysis Identifies Candidate Loci for callus induction in Rice (<i>Oryza sativa</i> L.).	Plants (Basel)	13(15)		2024		
55774	39085326	Shah M.H., Khan M.R.	Effectiveness of local isolates of Trichoderma spp. in imparting drought tolerance in rice, Oryza sativa.	Sci Rep	14(1)	17672	2024		
55775	39279854	Dai H., Fan Y., Mei Y., Chen L.L., Gao J.	Inference and prioritization of tissue-specific regulons in <i>Arabidopsis</i> and <i>Oryza</i>.	Abiotech	5(3)	309-324	2024		
55776	39106768	Li H., Liu Y., Xue M., Wang X., Miao W., Sun Q., Liu F., Mu W.	Variation in phytotoxicity of rice seedlings caused by differential accumulation of azoxystrobin and pyraclostrobin in leaves.	Plant Physiol. Biochem.	215	108947	2024		
55777	38995403	Bian Z., Cao D., Zou Y., Xie D., Zhuang W., Sun Z., Mou N., Sun Y., Zhang C., Li Q., Liu Q., Zhang L.	Genetic Dissection of Major Rice QTLs for Strong Culms and Fine Mapping of qWS5 for Breeding Application in Transplanted System.	Rice (N Y)	17(1)	43	2024		
55778	39169996	Kader M.A., Majumder R.R., Hore T.K., Shaha U.R., Shalahuddin A.K.M., Akter S., Alam Z., Kamruzzaman M.	Dataset on developing low glycemic index rice variety suitable for irrigated ecosystem in Bangladesh.	Data Brief	55	110757	2024		
55779	39149022	Bhandari R., Ansari M.J., Alharbi S.A., Kushwaha U.S., Ghimire P.	Productivity and profitability of black rice as affected by transplanting methods and crop geometry.	Heliyon	10(14)	e34741	2024		
55780	39062698	Neelam K., Aggarwal S.K., Kumari S., Kumar K., Kaur A., Babbar A., Lore J.S., Kaur R., Khanna R., Vikal Y., Singh K.	Molecular Mapping and Transfer of Quantitative Trait Loci (QTL) for Sheath Blight Resistance from Wild Rice <i>Oryza nivara</i> to Cultivated Rice (<i>Oryza sativa</i> L.).	Genes (Basel)	15(7)		2024		
55781	39062703	Kan W., Chen L., Wang B., Liu L., Yin F., Zhong Q., Li J., Zhang D., Xiao S., Zhang Y., Jiang C., Yu T., Wang Y., Cheng Z.	Examination of the Expression Profile of Resistance Genes in Yuanjiang Common Wild Rice (<i>Oryza rufipogon</i>).	Genes (Basel)	15(7)		2024		
55782	38997433	Li S.T., Ke Y., Zhu Y., Zhu T.Y., Huang H., Li L., Hou Z., Zhang X., Li Y., Liu C., Li X., Xie M., Zhou L., Meng C., Wang F., Gu X., Yang B., Yu H., Liang Z.	Mass spectrometry-based proteomic landscape of rice reveals a post-transcriptional regulatory role of N6-methyladenosine.	Nat Plants	10(8)	1201-1214	2024		
55783	39034114	Sakamoto S., Yoshikawa T., Sato Y., Mori N.	&#x3b2;-Tyrosine and its biosynthetic enzyme TAM1 are predominantly distributed in the ancestral subpopulation of japonica rice in Oryza rufipogon.	Genes Genet. Syst.	99		2024		
55784	39056752	Moriguchi R., Matsuoka K.	Toxin Homology Domain in Plant Type 2 Prolyl 4-Hydroxylases Acts as a Golgi Localization Domain.	Cells	13(14)		2024		
55785	39050253	Xu Q., Jiang J., Jing C., Hu C., Zhang M., Li X., Shen J., Hai M., Zhang Y., Wang D., Dang X.	Genome-wide association mapping of quantitative trait loci for chalkiness-related traits in rice (<i>Oryza sativa</i> L.).	Front Genet	15	1423648	2024		
55786	39002488	Liu H., Wang M., Jin S., Guo Q., Wang S., Ni H., Lu H., Li Z.	Coordinated responses of rice (Oryza sativa) to the stresses of benzotriazole ultraviolet stabilizers (BZT-UVs): Antioxidative system, photosynthetic activity, and metabolic regulation.	J. Hazard. Mater.	476	135157	2024		
55787	38965407	Vy T.T.P., Inoue Y., Asuke S., Chuma I., Nakayashiki H., Tosa Y.	The ACE1 secondary metabolite gene cluster is a pathogenicity factor of wheat blast fungus.	Commun Biol	7(1)	812	2024		
55788	38962172	Zhou B., Sheng Q., Yao X., Li T., Lu L.	Overexpression of <i>CsBRC</i>, an F-box gene from <i>Camellia sinensis</i>, increased the plant branching in tobacco and rice.	Plant Direct	8(7)	e618	2024		
55789	39194490	Chai W., Li H., Xu H., Zhu Q., Li S., Yuan C., Ji W., Wang J., Sheng L.	<i>ZmDST44</i> Gene Is a Positive Regulator in Plant Drought Stress Tolerance.	Biology (Basel)	13(8)		2024		
55790	39039789	Dang C., Xiao S., Wang F., Fang Q., Yao H., He K., Li F., Xue D., Ye G.	miRNA-mediated insect-resistant transgenic rice poses no risk to a non-target parasitoid, Cotesia chilonis, via direct feeding or through its target host.	Insect Science			2024		
55791	39039321	Ramachandra A., Vijayaraghavareddy P., Purushothama C., Nagaraju S., Sreeman S.	Decoding stomatal characteristics regulating water use efficiency at leaf and plant scales in rice genotypes.	Planta	260(3)	56	2024		
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55793	39124186	Mao S., Xiao J., Zhao Y., Hou J., Li L.	Genome-Wide Analysis of DNA Demethylases in Land Plants and Their Expression Pattern in Rice.	Plants (Basel)	13(15)		2024		
55794	39060315	Jia Z., Wang J., Meng X., Yang X., Tian Y., Wang B., Chen M., Yang J., Das D., Cao Y.	Evolution and stress response potential of the plant splicing factor U1C.	Sci Rep	14(1)	17212	2024		
55795	39080502	Tonosaki K., Susaki D., Morinaka H., Ono A., Nagata H., Furuumi H., Nonomura K.I., Sato Y., Sugimoto K., Comai L., Hatakeyama K., Kawakatsu T., Kinoshita T.	Multilayered epigenetic control of persistent and stage-specific imprinted genes in rice endosperm.	Nat Plants	10(8)	1231-1245	2024		
55796	39080105	Wang K., Lu Y., Jing S., Yang R., Xu X., Fan Y., Yang J.	Bud shapes dictate tiller-rhizome transition in African perennial rice (Oryza longistaminata).	Theor. Appl. Genet.	137(8)	194	2024		
