Warning: Permanently added '54.167.48.199' (ED25519) to the list of known hosts.

You can reproduce this build on your computer by running:

  sudo dnf install copr-rpmbuild
  /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/10929718-fedora-rawhide-aarch64 --chroot fedora-rawhide-aarch64


Version: 1.9
PID: 16267
Logging PID: 16269
Task:
{'allow_user_ssh': False,
 'appstream': False,
 'background': True,
 'build_id': 10929718,
 'buildroot_pkgs': ['fedora-clang-default-cc'],
 'chroot': 'fedora-rawhide-aarch64',
 'enable_net': False,
 'fedora_review': False,
 'git_hash': 'b874f5dfc7e091bd970c31ae0792ef78c3f9660c',
 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/@fedora-llvm-team/clang-monthly-fedora-rebuild/bcftools',
 'isolation': 'default',
 'memory_reqs': 2048,
 'package_name': 'bcftools',
 'package_version': '1.24-2',
 'project_dirname': 'clang-monthly-fedora-rebuild',
 'project_name': 'clang-monthly-fedora-rebuild',
 'project_owner': '@fedora-llvm-team',
 'repo_priority': None,
 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/@fedora-llvm-team/clang-monthly-fedora-rebuild/fedora-rawhide-aarch64/',
            'id': 'copr_base',
            'name': 'Copr repository',
            'priority': None,
            'repo_gpgcheck': False},
           {'baseurl': 'https://download.copr.fedorainfracloud.org/results/tstellar/fedora-clang-default-cc/fedora-rawhide-aarch64/',
            'id': 'copr_tstellar_fedora_clang_default_cc',
            'name': 'Additional repo copr_tstellar_fedora_clang_default_cc',
            'repo_gpgcheck': False},
           {'baseurl': 'https://download.copr.fedorainfracloud.org/results/@fedora-llvm-team/llvm-snapshots-big-merge-20260827/fedora-rawhide-aarch64/',
            'id': 'copr_fedora_llvm_team_llvm_snapshots_big_merge_20260827',
            'module_hotfixes': True,
            'name': 'Additional repo copr_fedora_llvm_team_llvm_snapshots_big_merge_20260827',
            'repo_gpgcheck': False}],
 'sandbox': '@fedora-llvm-team/clang-monthly-fedora-rebuild--kkleine',
 'source_json': {},
 'source_type': None,
 'ssh_public_keys': None,
 'storage': 0,
 'submitter': 'kkleine',
 'tags': [],
 'task_id': '10929718-fedora-rawhide-aarch64',
 'timeout': 90000,
 'uses_devel_repo': False,
 'with_opts': ['toolchain_clang', 'clang_lto'],
 'without_opts': []}

Running: git clone https://copr-dist-git.fedorainfracloud.org/git/@fedora-llvm-team/clang-monthly-fedora-rebuild/bcftools /var/lib/copr-rpmbuild/workspace/workdir-qd0xzr82/bcftools --depth 500 --no-single-branch --recursive

cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/@fedora-llvm-team/clang-monthly-fedora-rebuild/bcftools', '/var/lib/copr-rpmbuild/workspace/workdir-qd0xzr82/bcftools', '--depth', '500', '--no-single-branch', '--recursive']
cwd: .
rc: 0
stdout: 
stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-qd0xzr82/bcftools'...

Running: git checkout b874f5dfc7e091bd970c31ae0792ef78c3f9660c --

cmd: ['git', 'checkout', 'b874f5dfc7e091bd970c31ae0792ef78c3f9660c', '--']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-qd0xzr82/bcftools
rc: 0
stdout: 
stderr: Note: switching to 'b874f5dfc7e091bd970c31ae0792ef78c3f9660c'.

You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by switching back to a branch.

If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -c with the switch command. Example:

  git switch -c <new-branch-name>

Or undo this operation with:

  git switch -

Turn off this advice by setting config variable advice.detachedHead to false

HEAD is now at b874f5d automatic import of bcftools

Running: dist-git-client sources

cmd: ['dist-git-client', 'sources']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-qd0xzr82/bcftools
rc: 0
stdout: 
stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD
INFO: Reading stdout from command: git rev-parse HEAD
INFO: Reading sources specification file: sources
INFO: Downloading bcftools-1.24.tar.bz2
INFO: Reading stdout from command: curl --help all
INFO: Calling: curl -H Pragma: -H 'Accept-Encoding: identity' -o bcftools-1.24.tar.bz2 --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/@fedora-llvm-team/clang-monthly-fedora-rebuild/bcftools/bcftools-1.24.tar.bz2/md5/f2e02ae16e0a9a2f8a3e2408c6bcee7c/bcftools-1.24.tar.bz2
  % Total    % Received % Xferd  Average Speed  Time    Time    Time   Current
                                 Dload  Upload  Total   Spent   Left   Speed
100  7.88M 100  7.88M   0      0 21.53M      0                              0
INFO: Reading stdout from command: md5sum bcftools-1.24.tar.bz2

tail: /var/lib/copr-rpmbuild/main.log: file truncated
Running (timeout=90000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-qd0xzr82/bcftools/bcftools.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-qd0xzr82/bcftools --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1788305910.938784 -r /var/lib/copr-rpmbuild/results/configs/child.cfg --with toolchain_clang --with clang_lto
INFO: mock.py version 6.8 starting (python version = 3.14.5, NVR = mock-6.8-1.fc44), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-qd0xzr82/bcftools/bcftools.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-qd0xzr82/bcftools --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1788305910.938784 -r /var/lib/copr-rpmbuild/results/configs/child.cfg --with toolchain_clang --with clang_lto
Start(bootstrap): init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish(bootstrap): init plugins
Start: init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish: init plugins
INFO: Signal handler active
Start: run
INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-qd0xzr82/bcftools/bcftools.spec)  Config(fedora-rawhide-aarch64)
Start: clean chroot
Finish: clean chroot
Mock Version: 6.8
INFO: Mock Version: 6.8
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-aarch64-bootstrap-1788305910.938784/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
INFO: Guessed host environment type: unknown
INFO: Using container image: registry.fedoraproject.org/fedora:rawhide
INFO: Pulling image: registry.fedoraproject.org/fedora:rawhide
INFO: Tagging container image as mock-bootstrap-1ce6e648-de39-4b5a-b022-3e7cd68a7787
INFO: Checking that 54c454379b00122ebf27877684afd6df71b9c0d728be20203162dfb372ae1064 image matches host's architecture
INFO: Copy content of container 54c454379b00122ebf27877684afd6df71b9c0d728be20203162dfb372ae1064 to /var/lib/mock/fedora-rawhide-aarch64-bootstrap-1788305910.938784/root
INFO: mounting 54c454379b00122ebf27877684afd6df71b9c0d728be20203162dfb372ae1064 with podman image mount
INFO: image 54c454379b00122ebf27877684afd6df71b9c0d728be20203162dfb372ae1064 as /var/lib/containers/storage/overlay/4651d5602f1d57ac020de40ed1a75e11e23847a695820978fc63b339af8a7638/merged
INFO: umounting image 54c454379b00122ebf27877684afd6df71b9c0d728be20203162dfb372ae1064 (/var/lib/containers/storage/overlay/4651d5602f1d57ac020de40ed1a75e11e23847a695820978fc63b339af8a7638/merged) with podman image umount
INFO: Removing image mock-bootstrap-1ce6e648-de39-4b5a-b022-3e7cd68a7787
INFO: Package manager dnf5 detected and used (fallback)
INFO: Not updating bootstrap chroot, bootstrap_image_ready=True
Start(bootstrap): creating root cache
Finish(bootstrap): creating root cache
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-aarch64-1788305910.938784/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
INFO: Package manager dnf5 detected and used (direct choice)
INFO: Buildroot is handled by package management downloaded with a bootstrap image:
  rpm-6.1.0-1.fc46.aarch64
  rpm-sequoia-1.10.2-5.fc45.aarch64
  dnf5-5.4.3.0-2.fc46.aarch64
  dnf5-plugins-5.4.3.0-2.fc46.aarch64
Start: installing minimal buildroot with dnf5
Updating and loading repositories:
 fedora                                 100% |  25.5 KiB/s |  11.0 KiB |  00m00s
 Additional repo copr_tstellar_fedora_c 100% |   3.9 KiB/s |   1.5 KiB |  00m00s
 Additional repo copr_fedora_llvm_team_ 100% |   3.9 KiB/s |   1.5 KiB |  00m00s
 Copr repository                        100% |   4.0 KiB/s |   1.5 KiB |  00m00s
Repositories loaded.
Package                            Arch    Version                      Repository      Size
Installing group/module packages:
 bash                              aarch64 0:5.3.15-2.fc46              copr_base    8.5 MiB
 bzip2                             aarch64 0:1.0.8-24.fc46              copr_base  170.8 KiB
 coreutils                         aarch64 0:9.11-6.fc45                fedora       8.2 MiB
 cpio                              aarch64 0:2.15-10.fc46               copr_base    1.2 MiB
 diffutils                         aarch64 0:3.12-6.fc45                fedora       1.6 MiB
 fedora-release-common             noarch  0:46-0.1                     fedora       4.6 KiB
 findutils                         aarch64 1:4.11.0-2.fc45              fedora       2.0 MiB
 gawk                              aarch64 0:5.4.1-1.fc46               copr_base    2.9 MiB
 glibc-minimal-langpack            aarch64 0:2.44.9000-1.fc46           fedora       0.0   B
 grep                              aarch64 0:3.12-4.fc45                fedora       1.0 MiB
 gzip                              aarch64 0:1.14-4.fc46                copr_base  437.6 KiB
 info                              aarch64 0:7.3-3.fc46                 copr_base  423.7 KiB
 patch                             aarch64 0:2.8-5.fc46                 copr_base  263.0 KiB
 redhat-rpm-config                 noarch  0:344-5.fc45                 fedora     184.2 KiB
 rpm-build                         aarch64 0:6.1.0-1.fc46               fedora     616.1 KiB
 sed                               aarch64 0:4.10-2.fc45                fedora     878.4 KiB
 shadow-utils                      aarch64 2:4.20.0-1.fc45              fedora       4.4 MiB
 tar                               aarch64 2:1.35-9.fc45                fedora       3.0 MiB
 unzip                             aarch64 0:6.0-71.fc45                fedora     469.9 KiB
 util-linux                        aarch64 0:2.42.2-3.fc45              fedora       6.9 MiB
 which                             aarch64 0:2.25-2.fc46                copr_base  123.1 KiB
 xz                                aarch64 1:5.8.3-2.fc46               copr_base    1.5 MiB
Installing dependencies:
 R-srpm-macros                     noarch  0:1.3.7-3.fc45               fedora       3.5 KiB
 add-determinism                   aarch64 0:0.7.3-3.fc45               fedora       1.9 MiB
 alternatives                      aarch64 0:1.33-6.fc46                copr_base   89.9 KiB
 ansible-srpm-macros               noarch  0:1-22.fc45                  fedora      35.7 KiB
 audit-libs                        aarch64 0:4.2.1-2.fc45               fedora     486.7 KiB
 binutils                          aarch64 0:2.47-1.fc45                fedora      31.6 MiB
 build-reproducibility-srpm-macros noarch  0:0.7.3-3.fc45               fedora       1.2 KiB
 bzip2-libs                        aarch64 0:1.0.8-24.fc46              copr_base  136.4 KiB
 ca-certificates                   noarch  0:2025.2.80_v9.0.304-9.fc45  fedora       2.6 MiB
 cmake-srpm-macros                 noarch  0:4.3.0-5.fc45               fedora     524.0   B
 coreutils-common                  aarch64 0:9.11-6.fc45                fedora      10.9 MiB
 crypto-policies                   noarch  0:20260713-2.gitc42da77.fc45 fedora     134.3 KiB
 curl                              aarch64 0:8.22.0~rc3-1.fc46          fedora     526.7 KiB
 cyrus-sasl-lib                    aarch64 0:2.1.28-37.fc45             fedora       2.4 MiB
 debugedit                         aarch64 0:5.3-3.fc45                 fedora     320.9 KiB
 dwz                               aarch64 0:0.17-3.fc45                fedora     322.7 KiB
 ed                                aarch64 0:1.22.6-1.fc46              copr_base  223.0 KiB
 efi-srpm-macros                   noarch  0:6-9.fc45                   fedora      40.3 KiB
 elfutils                          aarch64 0:0.196-1.fc46               fedora       3.8 MiB
 elfutils-debuginfod-client        aarch64 0:0.196-1.fc46               fedora     144.0 KiB
 elfutils-libelf                   aarch64 0:0.196-1.fc46               fedora       1.5 MiB
 elfutils-libs                     aarch64 0:0.196-1.fc46               fedora     746.6 KiB
 erlang-srpm-macros                noarch  0:0.3.11-2.fc45              fedora       1.9 KiB
 fedora-gpg-keys                   noarch  0:46-0.3                     fedora     130.3 KiB
 fedora-release                    noarch  0:46-0.1                     fedora       0.0   B
 fedora-release-identity-basic     noarch  0:46-0.1                     fedora     664.0   B
 fedora-repos                      noarch  0:46-0.3                     fedora       4.9 KiB
 fedora-repos-rawhide              noarch  0:46-0.3                     fedora       2.2 KiB
 file                              aarch64 0:5.48-3.fc46                fedora     141.9 KiB
 file-libs                         aarch64 0:5.48-3.fc46                fedora      12.4 MiB
 filesystem                        aarch64 0:3.18-59.fc45               fedora     112.0   B
 filesystem-srpm-macros            noarch  0:3.18-59.fc45               fedora      38.2 KiB
 fips-provider                     aarch64 0:1.5.2-3.fc45               fedora       3.7 MiB
 fonts-srpm-macros                 noarch  1:5.0.0-4.fc45               fedora      55.8 KiB
 forge-srpm-macros                 noarch  0:0.4.0-5.fc45               fedora      38.9 KiB
 fpc-srpm-macros                   noarch  0:1.3-17.fc45                fedora     144.0   B
 gap-srpm-macros                   noarch  0:2-3.fc45                   fedora       2.1 KiB
 gdb-minimal                       aarch64 0:17.2-4.fc45                fedora      13.5 MiB
 gdbm-libs                         aarch64 1:1.23-12.fc45               copr_base  233.8 KiB
 ghc-srpm-macros                   noarch  0:1.10-2.fc45                fedora     792.0   B
 glibc                             aarch64 0:2.44.9000-1.fc46           fedora       6.6 MiB
 glibc-common                      aarch64 0:2.44.9000-1.fc46           fedora       1.3 MiB
 glibc-gconv-extra                 aarch64 0:2.44.9000-1.fc46           fedora      18.6 MiB
 gmp                               aarch64 1:6.3.0-6.fc45               fedora     657.9 KiB
 gnat-srpm-macros                  noarch  0:7-3.fc45                   fedora       1.0 KiB
 gnome-srpm-macros                 noarch  0:1.0-2.fc45                 fedora       3.5 KiB
 gnulib-l10n                       noarch  0:20241231-4.fc46            copr_base  655.0 KiB
 gnupg2                            aarch64 0:2.4.9-18.fc46              copr_base    6.6 MiB
 gnupg2-dirmngr                    aarch64 0:2.4.9-18.fc46              copr_base  712.4 KiB
 gnupg2-gpg-agent                  aarch64 0:2.4.9-18.fc46              copr_base  850.4 KiB
 gnupg2-gpgconf                    aarch64 0:2.4.9-18.fc46              copr_base  323.1 KiB
 gnupg2-keyboxd                    aarch64 0:2.4.9-18.fc46              copr_base  234.4 KiB
 gnupg2-verify                     aarch64 0:2.4.9-18.fc46              copr_base  431.3 KiB
 gnutls                            aarch64 0:3.8.13-3.fc45              fedora       3.7 MiB
 go-srpm-macros                    noarch  0:3.8.0-3.fc45               fedora      61.9 KiB
 gpgverify                         noarch  0:2.2-5.fc45                 fedora       8.7 KiB
 ima-evm-utils-libs                aarch64 0:1.6.2-12.fc46              copr_base   92.5 KiB
 jansson                           aarch64 0:2.14-5.fc46                copr_base  157.2 KiB
 java-srpm-macros                  noarch  0:1-9.fc45                   fedora     870.0   B
 json-c                            aarch64 0:0.18-9.fc46                copr_base  138.5 KiB
 kernel-srpm-macros                noarch  0:1.0-30.fc45                fedora       1.9 KiB
 keyutils-libs                     aarch64 0:1.6.3-8.fc46               copr_base   98.1 KiB
 krb5-libs                         aarch64 0:1.22.2-9.fc45              fedora       2.5 MiB
 libacl                            aarch64 0:2.4.0-2.fc45               fedora      67.9 KiB
 libarchive                        aarch64 0:3.8.9-1.fc46               copr_base  976.1 KiB
 libassuan                         aarch64 0:2.5.7-6.fc46               copr_base  216.1 KiB
 libattr                           aarch64 0:2.6.0-2.fc46               copr_base   68.2 KiB
 libblkid                          aarch64 0:2.42.2-3.fc45              fedora     290.3 KiB
 libbrotli                         aarch64 0:1.2.0-6.fc46               copr_base  909.0 KiB
 libcap                            aarch64 0:2.78-2.fc45                fedora     508.4 KiB
 libcap-ng                         aarch64 0:0.9.5-1.fc46               fedora     160.9 KiB
 libcbor                           aarch64 0:0.14.0-3.fc45              fedora     139.6 KiB
 libcom_err                        aarch64 0:1.47.4-2.fc45              fedora     111.1 KiB
 libcurl                           aarch64 0:8.22.0~rc3-1.fc46          fedora       1.0 MiB
 libeconf                          aarch64 0:0.7.9-4.fc45               copr_base   81.1 KiB
 libevent                          aarch64 0:2.1.12-19.fc46             copr_base    1.1 MiB
 libfdisk                          aarch64 0:2.42.2-3.fc45              fedora     418.8 KiB
 libffi                            aarch64 0:3.5.2-3.fc45               fedora     155.8 KiB
 libfido2                          aarch64 0:1.17.0-5.fc45              copr_base  281.5 KiB
 libfsverity                       aarch64 0:1.7-4.fc45                 fedora      68.4 KiB
 libgcc                            aarch64 0:16.2.1-2.fc46              fedora     222.3 KiB
 libgcrypt                         aarch64 0:1.12.3-1.fc46              fedora       1.2 MiB
 libgomp                           aarch64 0:16.2.1-2.fc46              fedora     592.9 KiB
 libgpg-error                      aarch64 0:1.61-2.fc46                copr_base  998.4 KiB
 libidn2                           aarch64 0:2.3.8-4.fc45               fedora     560.5 KiB
 libksba                           aarch64 0:1.8.1-1.fc46               fedora     407.8 KiB
 liblastlog2                       aarch64 0:2.42.2-3.fc45              fedora     137.8 KiB
 libmount                          aarch64 0:2.42.2-3.fc45              fedora     420.3 KiB
 libnghttp2                        aarch64 0:1.69.0-5.fc45              fedora     197.9 KiB
 libnghttp3                        aarch64 0:1.18.0-1.fc46              copr_base  207.7 KiB
 libpfm                            aarch64 0:4.13.0-23.fc45             fedora     252.0 KiB
 libpkgconf                        aarch64 0:2.5.1-2.fc45               copr_base  133.9 KiB
 libpsl                            aarch64 0:0.23.1-1.fc46              copr_base  132.2 KiB
 libselinux                        aarch64 0:3.11-4.fc45                fedora     265.2 KiB
 libselinux-utils                  aarch64 0:3.11-4.fc45                fedora       1.3 MiB
 libsemanage                       aarch64 0:3.11-3.fc45                fedora     360.1 KiB
 libsepol                          aarch64 0:3.11-2.fc45                fedora     809.9 KiB
 libsmartcols                      aarch64 0:2.42.2-3.fc45              fedora     224.4 KiB
 libssh                            aarch64 0:0.12.2-1.fc45              fedora     721.4 KiB
 libssh-config                     noarch  0:0.12.2-1.fc45              fedora     277.0   B
 libstdc++                         aarch64 0:16.2.1-2.fc46              fedora       3.0 MiB
 libtasn1                          aarch64 0:4.21.0-2.fc46              copr_base  220.7 KiB
 libtool-ltdl                      aarch64 0:2.5.4-11.fc45              fedora      93.9 KiB
 libunistring                      aarch64 0:1.1-12.fc46                copr_base    1.7 MiB
 libusb1                           aarch64 0:1.0.30-2.fc45              fedora     179.7 KiB
 libuuid                           aarch64 0:2.42.2-3.fc45              fedora      69.3 KiB
 libverto                          aarch64 0:0.3.2-13.fc45              fedora      69.3 KiB
 libxcrypt                         aarch64 0:4.5.2-4.fc45               fedora     273.2 KiB
 libxml2                           aarch64 0:2.13.9-4.fc45              copr_base    2.0 MiB
 libzstd                           aarch64 0:1.5.7-6.fc45               copr_base  795.4 KiB
 linkdupes                         aarch64 0:0.7.3-3.fc45               fedora     711.0 KiB
 lua-libs                          aarch64 0:5.5.1-2.fc46               fedora     330.0 KiB
 lua-srpm-macros                   noarch  0:1-18.fc45                  fedora       1.3 KiB
 lz4-libs                          aarch64 0:1.10.0-5.fc46              copr_base  197.1 KiB
 mpfr                              aarch64 0:4.2.2-4.fc45               fedora     755.4 KiB
 ncurses-base                      noarch  0:6.6-3.fc46                 copr_base  329.7 KiB
 ncurses-libs                      aarch64 0:6.6-3.fc46                 copr_base    1.3 MiB
 nettle                            aarch64 0:4.0-5.fc45                 fedora     836.7 KiB
 ngtcp2                            aarch64 0:1.22.1-3.fc45              fedora     341.1 KiB
 ngtcp2-crypto-ossl                aarch64 0:1.22.1-3.fc45              fedora      67.5 KiB
 npth                              aarch64 0:1.8-5.fc46                 copr_base   93.4 KiB
 ocaml-srpm-macros                 noarch  0:11-4.fc45                  fedora       1.9 KiB
 openblas-srpm-macros              noarch  0:2-22.fc45                  fedora     112.0   B
 openldap                          aarch64 0:2.6.14-1.fc46              fedora     765.1 KiB
 openssl-libs                      aarch64 1:4.0.2-1.fc46               fedora       5.8 MiB
 p11-kit                           aarch64 0:0.26.5-1.fc45              fedora       2.8 MiB
 p11-kit-trust                     aarch64 0:0.26.5-1.fc45              fedora     530.1 KiB
 package-notes-srpm-macros         noarch  0:0.20-2.fc45                fedora       1.6 KiB
 pam-libs                          aarch64 0:1.7.2-4.fc45               copr_base  222.7 KiB
 pcre2                             aarch64 0:10.47-1.fc46.2             copr_base  841.7 KiB
 pcre2-syntax                      noarch  0:10.47-1.fc46.2             copr_base  281.9 KiB
 perl-srpm-macros                  noarch  0:1-65.fc45                  fedora     861.0   B
 pkgconf                           aarch64 0:2.5.1-2.fc45               copr_base  114.8 KiB
 pkgconf-m4                        noarch  0:2.5.1-2.fc45               copr_base   14.3 KiB
 pkgconf-pkg-config                aarch64 0:2.5.1-2.fc45               copr_base  990.0   B
 policycoreutils                   aarch64 0:3.11-2.fc46                copr_base    1.5 MiB
 popt                              aarch64 0:1.19-11.fc46               copr_base  144.5 KiB
 publicsuffix-list-dafsa           noarch  0:20260624-2.fc45            fedora      71.3 KiB
 pyproject-srpm-macros             noarch  0:1.23.2-1.fc45              fedora       3.4 KiB
 python-srpm-macros                noarch  0:3.15-2.fc45                fedora      51.6 KiB
 qt5-srpm-macros                   noarch  0:5.15.18-3.fc45             fedora     500.0   B
 qt6-srpm-macros                   noarch  0:6.11.2-1.fc46              fedora     472.0   B
 readline                          aarch64 0:8.3-6.fc46                 copr_base  563.6 KiB
 redhat-systemd-presets            noarch  0:102-3.fc45                 fedora       1.0 KiB
 redhat-systemd-presets-common     noarch  0:102-3.fc45                 fedora      16.9 KiB
 rpm                               aarch64 0:6.1.0-1.fc46               fedora       3.3 MiB
 rpm-build-libs                    aarch64 0:6.1.0-1.fc46               fedora     264.0 KiB
 rpm-libs                          aarch64 0:6.1.0-1.fc46               fedora       1.1 MiB
 rpm-plugin-selinux                aarch64 0:6.1.0-1.fc46               fedora      67.9 KiB
 rpm-sequoia                       aarch64 0:1.10.2-5.fc46              copr_base    2.3 MiB
 rpm-sign-libs                     aarch64 0:6.1.0-1.fc46               fedora      67.7 KiB
 rust-srpm-macros                  noarch  0:28.5-2.fc45                fedora       5.5 KiB
 selinux-policy                    noarch  0:45.15-1.fc46               fedora      32.1 KiB
 selinux-policy-targeted           noarch  0:45.15-1.fc46               fedora      19.0 MiB
 setup                             noarch  0:2.15.1-2.fc45              fedora     725.6 KiB
 sqlite-libs                       aarch64 0:3.53.4-1.fc45              fedora       1.6 MiB
 systemd-libs                      aarch64 0:261.2-1.fc45               fedora       2.7 MiB
 systemd-standalone-sysusers       aarch64 0:261.2-1.fc45               fedora     914.7 KiB
 tpm2-tss                          aarch64 0:4.2.0-1.fc45               copr_base    2.3 MiB
 tree-sitter-srpm-macros           noarch  0:0.4.6-2.fc45               fedora       8.6 KiB
 util-linux-core                   aarch64 0:2.42.2-3.fc45              fedora       2.5 MiB
 xxhash-libs                       aarch64 0:0.8.3-5.fc46               copr_base   85.6 KiB
 xz-libs                           aarch64 1:5.8.3-2.fc46               copr_base  265.8 KiB
 zig-srpm-macros                   noarch  0:1-9.fc45                   fedora       1.3 KiB
 zip                               aarch64 0:3.0-46.fc45                fedora     762.2 KiB
 zlib-ng-compat                    aarch64 0:2.3.3-6.fc46               copr_base  133.2 KiB
 zstd                              aarch64 0:1.5.7-6.fc45               copr_base  559.9 KiB
Installing groups:
 Buildsystem building group                                                                 

Transaction Summary:
 Installing:       189 packages

Total size of inbound packages is 69 MiB. Need to download 143 KiB.
After this operation, 257 MiB extra will be used (install 257 MiB, remove 0 B).
[  1/189] tar-2:1.35-9.fc45.aarch64     100% |   0.0   B/s |   0.0   B |  00m00s
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[  2/189] redhat-rpm-config-0:344-5.fc4 100% |   0.0   B/s |   0.0   B |  00m00s
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[  3/189] rpm-build-0:6.1.0-1.fc46.aarc 100% |   0.0   B/s |   0.0   B |  00m00s
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[  4/189] unzip-0:6.0-71.fc45.aarch64   100% |   0.0   B/s |   0.0   B |  00m00s
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[  5/189] fedora-release-common-0:46-0. 100% |   0.0   B/s |   0.0   B |  00m00s
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[  6/189] glibc-minimal-langpack-0:2.44 100% |   0.0   B/s |   0.0   B |  00m00s
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[  9/189] which-0:2.25-2.fc46.aarch64   100% |   0.0   B/s |   0.0   B |  00m00s
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[ 12/189] grep-0:3.12-4.fc45.aarch64    100% |   0.0   B/s |   0.0   B |  00m00s
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[ 14/189] sed-0:4.10-2.fc45.aarch64     100% |   0.0   B/s |   0.0   B |  00m00s
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[ 17/189] diffutils-0:3.12-6.fc45.aarch 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 21/189] info-0:7.3-3.fc46.aarch64     100% |   0.0   B/s |   0.0   B |  00m00s
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[ 22/189] xz-1:5.8.3-2.fc46.aarch64     100% |   0.0   B/s |   0.0   B |  00m00s
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[ 23/189] glibc-0:2.44.9000-1.fc46.aarc 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 24/189] libacl-0:2.4.0-2.fc45.aarch64 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 25/189] R-srpm-macros-0:1.3.7-3.fc45. 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 26/189] ansible-srpm-macros-0:1-22.fc 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 29/189] dwz-0:0.17-3.fc45.aarch64     100% |   0.0   B/s |   0.0   B |  00m00s
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[ 30/189] efi-srpm-macros-0:6-9.fc45.no 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 31/189] erlang-srpm-macros-0:0.3.11-2 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 32/189] file-0:5.48-3.fc46.aarch64    100% |   0.0   B/s |   0.0   B |  00m00s
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[ 33/189] filesystem-srpm-macros-0:3.18 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 34/189] fonts-srpm-macros-1:5.0.0-4.f 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 35/189] forge-srpm-macros-0:0.4.0-5.f 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 36/189] fpc-srpm-macros-0:1.3-17.fc45 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 37/189] gap-srpm-macros-0:2-3.fc45.no 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 38/189] ghc-srpm-macros-0:1.10-2.fc45 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 39/189] gnat-srpm-macros-0:7-3.fc45.n 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 40/189] gnome-srpm-macros-0:1.0-2.fc4 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 41/189] go-srpm-macros-0:3.8.0-3.fc45 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 42/189] java-srpm-macros-0:1-9.fc45.n 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 43/189] kernel-srpm-macros-0:1.0-30.f 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 44/189] lua-srpm-macros-0:1-18.fc45.n 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 45/189] ocaml-srpm-macros-0:11-4.fc45 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 46/189] openblas-srpm-macros-0:2-22.f 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 47/189] package-notes-srpm-macros-0:0 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 48/189] perl-srpm-macros-0:1-65.fc45. 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 49/189] pyproject-srpm-macros-0:1.23. 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 50/189] python-srpm-macros-0:3.15-2.f 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 51/189] qt5-srpm-macros-0:5.15.18-3.f 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 52/189] qt6-srpm-macros-0:6.11.2-1.fc 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 53/189] rpm-0:6.1.0-1.fc46.aarch64    100% |   0.0   B/s |   0.0   B |  00m00s
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[ 54/189] rust-srpm-macros-0:28.5-2.fc4 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 55/189] tree-sitter-srpm-macros-0:0.4 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 56/189] zig-srpm-macros-0:1-9.fc45.no 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 57/189] zip-0:3.0-46.fc45.aarch64     100% |   0.0   B/s |   0.0   B |  00m00s
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[ 58/189] binutils-0:2.47-1.fc45.aarch6 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 59/189] elfutils-0:0.196-1.fc46.aarch 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 61/189] libgcc-0:16.2.1-2.fc46.aarch6 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 63/189] rpm-build-libs-0:6.1.0-1.fc46 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 64/189] rpm-libs-0:6.1.0-1.fc46.aarch 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 65/189] fedora-repos-0:46-0.3.noarch  100% |   0.0   B/s |   0.0   B |  00m00s
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[ 66/189] redhat-systemd-presets-0:102- 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 67/189] glibc-common-0:2.44.9000-1.fc 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 68/189] filesystem-0:3.18-59.fc45.aar 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 69/189] coreutils-common-0:9.11-6.fc4 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 70/189] gmp-1:6.3.0-6.fc45.aarch64    100% |   0.0   B/s |   0.0   B |  00m00s
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[ 71/189] libcap-0:2.78-2.fc45.aarch64  100% |   0.0   B/s |   0.0   B |  00m00s
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[ 72/189] openssl-libs-1:4.0.2-1.fc46.a 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 74/189] audit-libs-0:4.2.1-2.fc45.aar 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 75/189] libsemanage-0:3.11-3.fc45.aar 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 76/189] libxcrypt-0:4.5.2-4.fc45.aarc 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 77/189] setup-0:2.15.1-2.fc45.noarch  100% |   0.0   B/s |   0.0   B |  00m00s
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[ 78/189] libblkid-0:2.42.2-3.fc45.aarc 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 80/189] liblastlog2-0:2.42.2-3.fc45.a 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 81/189] libmount-0:2.42.2-3.fc45.aarc 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 82/189] libsmartcols-0:2.42.2-3.fc45. 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 83/189] libuuid-0:2.42.2-3.fc45.aarch 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 84/189] util-linux-core-0:2.42.2-3.fc 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 85/189] xz-libs-1:5.8.3-2.fc46.aarch6 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 86/189] glibc-gconv-extra-0:2.44.9000 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 87/189] add-determinism-0:0.7.3-3.fc4 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 88/189] linkdupes-0:0.7.3-3.fc45.aarc 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 96/189] fedora-gpg-keys-0:46-0.3.noar 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 97/189] fedora-repos-rawhide-0:46-0.3 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 98/189] redhat-systemd-presets-common 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 99/189] ca-certificates-0:2025.2.80_v 100% |   0.0   B/s |   0.0   B |  00m00s
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[100/189] crypto-policies-0:20260713-2. 100% |   0.0   B/s |   0.0   B |  00m00s
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[101/189] fips-provider-0:1.5.2-3.fc45. 100% |   0.0   B/s |   0.0   B |  00m00s
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[102/189] libselinux-0:3.11-4.fc45.aarc 100% |   0.0   B/s |   0.0   B |  00m00s
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[103/189] libsepol-0:3.11-2.fc45.aarch6 100% |   0.0   B/s |   0.0   B |  00m00s
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[104/189] ed-0:1.22.6-1.fc46.aarch64    100% |   0.0   B/s |   0.0   B |  00m00s
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[105/189] libattr-0:2.6.0-2.fc46.aarch6 100% |   0.0   B/s |   0.0   B |  00m00s
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[106/189] ncurses-libs-0:6.6-3.fc46.aar 100% |   0.0   B/s |   0.0   B |  00m00s
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[107/189] ncurses-base-0:6.6-3.fc46.noa 100% |   0.0   B/s |   0.0   B |  00m00s
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[108/189] mpfr-0:4.2.2-4.fc45.aarch64   100% |   0.0   B/s |   0.0   B |  00m00s
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[109/189] readline-0:8.3-6.fc46.aarch64 100% |   0.0   B/s |   0.0   B |  00m00s
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[110/189] bzip2-libs-0:1.0.8-24.fc46.aa 100% |   0.0   B/s |   0.0   B |  00m00s
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[111/189] libcap-ng-0:0.9.5-1.fc46.aarc 100% |   0.0   B/s |   0.0   B |  00m00s
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[112/189] pam-libs-0:1.7.2-4.fc45.aarch 100% |   0.0   B/s |   0.0   B |  00m00s
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[113/189] zlib-ng-compat-0:2.3.3-6.fc46 100% |   0.0   B/s |   0.0   B |  00m00s
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[114/189] libeconf-0:0.7.9-4.fc45.aarch 100% |   0.0   B/s |   0.0   B |  00m00s
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[115/189] gnupg2-0:2.4.9-18.fc46.aarch6 100% |   0.0   B/s |   0.0   B |  00m00s
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[116/189] gpgverify-0:2.2-5.fc45.noarch 100% |   0.0   B/s |   0.0   B |  00m00s
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[117/189] libgcrypt-0:1.12.3-1.fc46.aar 100% |   0.0   B/s |   0.0   B |  00m00s
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[118/189] gnupg2-dirmngr-0:2.4.9-18.fc4 100% |   0.0   B/s |   0.0   B |  00m00s
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[119/189] gnupg2-gpg-agent-0:2.4.9-18.f 100% |   0.0   B/s |   0.0   B |  00m00s
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[120/189] gnupg2-gpgconf-0:2.4.9-18.fc4 100% |   0.0   B/s |   0.0   B |  00m00s
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[121/189] gnupg2-keyboxd-0:2.4.9-18.fc4 100% |   0.0   B/s |   0.0   B |  00m00s
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[122/189] gnupg2-verify-0:2.4.9-18.fc46 100% |   0.0   B/s |   0.0   B |  00m00s
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[123/189] gnutls-0:3.8.13-3.fc45.aarch6 100% |   0.0   B/s |   0.0   B |  00m00s
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[124/189] openldap-0:2.6.14-1.fc46.aarc 100% |   0.0   B/s |   0.0   B |  00m00s
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[125/189] nettle-0:4.0-5.fc45.aarch64   100% |   0.0   B/s |   0.0   B |  00m00s
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--------------------------------------------------------------------------------
[189/189] Total                         100% |   1.7 MiB/s | 143.1 KiB |  00m00s
Running transaction
Importing OpenPGP key 0x91211FCE:
 UserID     : "Fedora (46) <fedora-46-primary@fedoraproject.org>"
 Fingerprint: D924B10D3E810DABDD8B56B596E7E91491211FCE
 From       : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-46-primary
The key was successfully imported.
Importing OpenPGP key 0x91211FCE:
 UserID     : "Fedora (46) <fedora-46-primary@fedoraproject.org>"
 Fingerprint: D924B10D3E810DABDD8B56B596E7E91491211FCE
 From       : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-46-primary
The key was successfully imported.
Importing OpenPGP key 0xF577861E:
 UserID     : "Fedora (45) <fedora-45-primary@fedoraproject.org>"
 Fingerprint: 4F50A6114CD5C6976A7F1179655A4B02F577861E
 From       : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-45-primary
The key was successfully imported.
Importing OpenPGP key 0x9488FB64:
 UserID     : "Fedora (47) <fedora-47-primary@fedoraproject.org>"
 Fingerprint: B2E766FA50CA6FA2D5ED06FC09D879E09488FB64
 From       : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-47-primary
The key was successfully imported.
[  1/191] Verify package files          100% | 715.0   B/s | 189.0   B |  00m00s
>>> Running %pretrans scriptlet: filesystem-0:3.18-59.fc45.aarch64
>>> Finished %pretrans scriptlet: filesystem-0:3.18-59.fc45.aarch64
>>> [RPM] /var/lib/mock/fedora-rawhide-aarch64-1788305910.938784/root/var/cache/dnf/copr_base-40e073fdd9fcc57e/packages/bzip2-1.0.8-24.fc46.aarch64.rpm: Header OpenPGP V4 RSA/SHA256 signature, key ID 5291f7fa5c4b3009: NOKEY
>>> [RPM] failed to open /var/lib/mock/fedora-rawhide-aarch64-1788305910.938784/root/etc/group for id/name lookup: No such file or directory
[  2/191] Prepare transaction           100% |   2.2 KiB/s | 189.0   B |  00m00s
[  3/191] Installing libgcc-0:16.2.1-2. 100% | 109.4 MiB/s | 224.0 KiB |  00m00s
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[ 10/191] Installing fedora-repos-rawhi 100% |   0.0   B/s |   2.5 KiB |  00m00s
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>>> Running sysusers scriptlet: setup-0:2.15.1-2.fc45.noarch
>>> Finished sysusers scriptlet: setup-0:2.15.1-2.fc45.noarch
>>> Scriptlet output:
>>> Creating group 'adm' with GID 4.
>>> Creating group 'audio' with GID 63.
>>> Creating group 'cdrom' with GID 11.
>>> Creating group 'clock' with GID 103.
>>> Creating group 'dialout' with GID 18.
>>> Creating group 'disk' with GID 6.
>>> Creating group 'floppy' with GID 19.
>>> Creating group 'ftp' with GID 50.
>>> Creating group 'games' with GID 20.
>>> Creating group 'input' with GID 104.
>>> Creating group 'kmem' with GID 9.
>>> Creating group 'kvm' with GID 36.
>>> Creating group 'lock' with GID 54.
>>> Creating group 'lp' with GID 7.
>>> Creating group 'mail' with GID 12.
>>> Creating group 'man' with GID 15.
>>> Creating group 'mem' with GID 8.
>>> Creating group 'nobody' with GID 65534.
>>> Creating group 'render' with GID 105.
>>> Creating group 'root' with GID 0.
>>> Creating group 'sgx' with GID 106.
>>> Creating group 'sys' with GID 3.
>>> Creating group 'tape' with GID 33.
>>> Creating group 'tty' with GID 5.
>>> Creating group 'users' with GID 100.
>>> Creating group 'utmp' with GID 22.
>>> Creating group 'video' with GID 39.
>>> Creating group 'wheel' with GID 10.
>>> Creating user 'adm' (adm) with UID 3 and GID 4.
>>> Creating group 'bin' with GID 1.
>>> Creating user 'bin' (bin) with UID 1 and GID 1.
>>> Creating group 'daemon' with GID 2.
>>> Creating user 'daemon' (daemon) with UID 2 and GID 2.
>>> Creating user 'ftp' (FTP User) with UID 14 and GID 50.
>>> Creating user 'games' (games) with UID 12 and GID 100.
>>> Creating user 'halt' (halt) with UID 7 and GID 0.
>>> Creating user 'lp' (lp) with UID 4 and GID 7.
>>> Creating user 'mail' (mail) with UID 8 and GID 12.
>>> Creating user 'nobody' (Kernel Overflow User) with UID 65534 and GID 65534.
>>> Creating user 'operator' (operator) with UID 11 and GID 0.
>>> Creating user 'root' (Super User) with UID 0 and GID 0.
>>> Creating user 'shutdown' (shutdown) with UID 6 and GID 0.
>>> Creating user 'sync' (sync) with UID 5 and GID 0.
>>> 
[ 14/191] Installing setup-0:2.15.1-2.f 100% |  28.6 MiB/s | 731.3 KiB |  00m00s
>>> [RPM] /etc/hosts created as /etc/hosts.rpmnew
[ 15/191] Installing filesystem-0:3.18- 100% |   1.8 MiB/s | 253.6 KiB |  00m00s
[ 16/191] Installing pkgconf-m4-0:2.5.1 100% |  14.4 MiB/s |  14.7 KiB |  00m00s
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[ 31/191] Installing libzstd-0:1.5.7-6. 100% | 259.3 MiB/s | 796.7 KiB |  00m00s
[ 32/191] Installing elfutils-libelf-0: 100% | 364.6 MiB/s |   1.5 MiB |  00m00s
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[ 34/191] Installing libassuan-0:2.5.7- 100% | 212.8 MiB/s | 217.9 KiB |  00m00s
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[ 40/191] Installing xz-libs-1:5.8.3-2. 100% | 260.7 MiB/s | 266.9 KiB |  00m00s
[ 41/191] Installing popt-0:1.19-11.fc4 100% |  49.2 MiB/s | 151.2 KiB |  00m00s
[ 42/191] Installing sqlite-libs-0:3.53 100% | 261.4 MiB/s |   1.6 MiB |  00m00s
[ 43/191] Installing npth-0:1.8-5.fc46. 100% |  92.3 MiB/s |  94.5 KiB |  00m00s
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[ 45/191] Installing libblkid-0:2.42.2- 100% | 284.6 MiB/s | 291.4 KiB |  00m00s
[ 46/191] Installing libsepol-0:3.11-2. 100% | 264.0 MiB/s | 810.9 KiB |  00m00s
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[ 53/191] Installing sed-0:4.10-2.fc45. 100% |  30.9 MiB/s | 886.9 KiB |  00m00s
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[ 55/191] Installing libtasn1-0:4.21.0- 100% | 217.3 MiB/s | 222.5 KiB |  00m00s
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[ 59/191] Installing xz-1:5.8.3-2.fc46. 100% |  49.5 MiB/s |   1.5 MiB |  00m00s
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[ 62/191] Installing mpfr-0:4.2.2-4.fc4 100% | 246.4 MiB/s | 757.1 KiB |  00m00s
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[ 64/191] Installing dwz-0:0.17-3.fc45. 100% |  13.2 MiB/s | 324.0 KiB |  00m00s
[ 65/191] Installing libksba-0:1.8.1-1. 100% | 200.3 MiB/s | 410.3 KiB |  00m00s
[ 66/191] Installing unzip-0:6.0-71.fc4 100% |  18.5 MiB/s | 473.4 KiB |  00m00s
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[ 68/191] Installing file-0:5.48-3.fc46 100% |   5.8 MiB/s | 143.4 KiB |  00m00s
[ 69/191] Installing diffutils-0:3.12-6 100% |  54.1 MiB/s |   1.6 MiB |  00m00s
[ 70/191] Installing libsmartcols-0:2.4 100% | 110.1 MiB/s | 225.4 KiB |  00m00s
[ 71/191] Installing lua-libs-0:5.5.1-2 100% | 161.9 MiB/s | 331.5 KiB |  00m00s
[ 72/191] Installing libattr-0:2.6.0-2. 100% |  67.5 MiB/s |  69.1 KiB |  00m00s
[ 73/191] Installing libcap-ng-0:0.9.5- 100% | 159.0 MiB/s | 162.8 KiB |  00m00s
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[ 75/191] Installing libsemanage-0:3.11 100% | 176.7 MiB/s | 361.9 KiB |  00m00s
[ 76/191] Installing libeconf-0:0.7.9-4 100% |  80.8 MiB/s |  82.7 KiB |  00m00s
[ 77/191] Installing pam-libs-0:1.7.2-4 100% | 219.8 MiB/s | 225.1 KiB |  00m00s
[ 78/191] Installing libcap-0:2.78-2.fc 100% |  20.1 MiB/s | 513.5 KiB |  00m00s
[ 79/191] Installing libffi-0:3.5.2-3.f 100% | 153.5 MiB/s | 157.2 KiB |  00m00s
[ 80/191] Installing p11-kit-0:0.26.5-1 100% |  82.3 MiB/s |   2.8 MiB |  00m00s
[ 81/191] Installing alternatives-0:1.3 100% |   3.9 MiB/s |  91.5 KiB |  00m00s
[ 82/191] Installing p11-kit-trust-0:0. 100% |  17.9 MiB/s | 531.9 KiB |  00m00s
[ 83/191] Installing ngtcp2-0:1.22.1-3. 100% | 167.3 MiB/s | 342.7 KiB |  00m00s
[ 84/191] Installing liblastlog2-0:2.42 100% |  27.3 MiB/s | 139.8 KiB |  00m00s
[ 85/191] Installing util-linux-core-0: 100% |  76.8 MiB/s |   2.5 MiB |  00m00s
[ 86/191] Installing zip-0:3.0-46.fc45. 100% |  28.8 MiB/s | 766.1 KiB |  00m00s
[ 87/191] Installing gnupg2-keyboxd-0:2 100% |  46.0 MiB/s | 235.5 KiB |  00m00s
[ 88/191] Installing libpsl-0:0.23.1-1. 100% | 130.2 MiB/s | 133.4 KiB |  00m00s
[ 89/191] Installing tar-2:1.35-9.fc45. 100% |  88.4 MiB/s |   3.0 MiB |  00m00s
[ 90/191] Installing linkdupes-0:0.7.3- 100% |  27.8 MiB/s | 712.4 KiB |  00m00s
[ 91/191] Installing libselinux-utils-0 100% |  50.3 MiB/s |   1.4 MiB |  00m00s
[ 92/191] Installing libfdisk-0:2.42.2- 100% | 205.0 MiB/s | 419.9 KiB |  00m00s
[ 93/191] Installing fips-provider-0:1. 100% | 340.8 MiB/s |   3.7 MiB |  00m00s
[ 94/191] Installing openssl-libs-1:4.0 100% | 322.8 MiB/s |   5.8 MiB |  00m00s
[ 95/191] Installing coreutils-0:9.11-6 100% | 164.5 MiB/s |   8.2 MiB |  00m00s
[ 96/191] Installing ca-certificates-0: 100% |   1.4 MiB/s |   2.4 MiB |  00m02s
[ 97/191] Installing util-linux-0:2.42. 100% | 129.8 MiB/s |   7.0 MiB |  00m00s
[ 98/191] Installing policycoreutils-0: 100% |  40.2 MiB/s |   1.5 MiB |  00m00s
[ 99/191] Installing selinux-policy-0:4 100% |   1.9 MiB/s |  34.5 KiB |  00m00s
[100/191] Installing selinux-policy-tar 100% | 148.5 MiB/s |  15.1 MiB |  00m00s
[101/191] Installing gzip-0:1.14-4.fc46 100% |  16.0 MiB/s | 443.2 KiB |  00m00s
[102/191] Installing libfsverity-0:1.7- 100% |  67.8 MiB/s |  69.4 KiB |  00m00s
[103/191] Installing rpm-sequoia-0:1.10 100% | 327.3 MiB/s |   2.3 MiB |  00m00s
[104/191] Installing libevent-0:2.1.12- 100% | 286.4 MiB/s |   1.1 MiB |  00m00s
[105/191] Installing ngtcp2-crypto-ossl 100% |  66.7 MiB/s |  68.3 KiB |  00m00s
[106/191] Installing libxml2-0:2.13.9-4 100% |  67.8 MiB/s |   2.0 MiB |  00m00s
[107/191] Installing libusb1-0:1.0.30-2 100% |  25.3 MiB/s | 181.4 KiB |  00m00s
>>> Running sysusers scriptlet: tpm2-tss-0:4.2.0-1.fc45.aarch64
>>> Finished sysusers scriptlet: tpm2-tss-0:4.2.0-1.fc45.aarch64
>>> Scriptlet output:
>>> Creating group 'tss' with GID 59.
>>> Creating user 'tss' (Account used for TPM access) with UID 59 and GID 59.
>>> 
[108/191] Installing tpm2-tss-0:4.2.0-1 100% | 286.7 MiB/s |   2.3 MiB |  00m00s
[109/191] Installing gnupg2-gpg-agent-0 100% |  26.9 MiB/s | 854.4 KiB |  00m00s
[110/191] Installing ima-evm-utils-libs 100% |  91.6 MiB/s |  93.8 KiB |  00m00s
[111/191] Installing nettle-0:4.0-5.fc4 100% | 205.0 MiB/s | 839.8 KiB |  00m00s
[112/191] Installing gnutls-0:3.8.13-3. 100% | 309.1 MiB/s |   3.7 MiB |  00m00s
[113/191] Installing zstd-0:1.5.7-6.fc4 100% |  21.2 MiB/s | 563.5 KiB |  00m00s
[114/191] Installing bzip2-0:1.0.8-24.f 100% |   7.1 MiB/s | 175.3 KiB |  00m00s
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[116/191] Installing build-reproducibil 100% |   0.0   B/s |   1.5 KiB |  00m00s
[117/191] Installing filesystem-srpm-ma 100% |  38.0 MiB/s |  38.9 KiB |  00m00s
[118/191] Installing ed-0:1.22.6-1.fc46 100% |   9.2 MiB/s | 225.3 KiB |  00m00s
[119/191] Installing patch-0:2.8-5.fc46 100% |  10.8 MiB/s | 264.5 KiB |  00m00s
[120/191] Installing cpio-0:2.15-10.fc4 100% |  41.4 MiB/s |   1.2 MiB |  00m00s
[121/191] Installing libpfm-0:4.13.0-23 100% | 247.4 MiB/s | 253.3 KiB |  00m00s
[122/191] Installing libgomp-0:16.2.1-2 100% | 290.2 MiB/s | 594.3 KiB |  00m00s
[123/191] Installing libtool-ltdl-0:2.5 100% |  92.8 MiB/s |  95.0 KiB |  00m00s
[124/191] Installing gdbm-libs-1:1.23-1 100% | 230.0 MiB/s | 235.5 KiB |  00m00s
[125/191] Installing cyrus-sasl-lib-0:2 100% |  80.6 MiB/s |   2.4 MiB |  00m00s
[126/191] Installing openldap-0:2.6.14- 100% | 187.7 MiB/s | 768.9 KiB |  00m00s
[127/191] Installing gnupg2-dirmngr-0:2 100% |  23.3 MiB/s | 715.1 KiB |  00m00s
[128/191] Installing gnupg2-0:2.4.9-18. 100% | 151.1 MiB/s |   6.6 MiB |  00m00s
[129/191] Installing gpgverify-0:2.2-5. 100% |   9.2 MiB/s |   9.4 KiB |  00m00s
[130/191] Installing jansson-0:2.14-5.f 100% | 154.9 MiB/s | 158.6 KiB |  00m00s
[131/191] Installing libpkgconf-0:2.5.1 100% | 131.9 MiB/s | 135.0 KiB |  00m00s
[132/191] Installing pkgconf-0:2.5.1-2. 100% |   4.8 MiB/s | 117.4 KiB |  00m00s
[133/191] Installing pkgconf-pkg-config 100% |  77.1 KiB/s |   1.8 KiB |  00m00s
[134/191] Installing lz4-libs-0:1.10.0- 100% | 193.6 MiB/s | 198.2 KiB |  00m00s
[135/191] Installing libarchive-0:3.8.9 100% | 238.8 MiB/s | 978.1 KiB |  00m00s
[136/191] Installing systemd-standalone 100% |  34.4 MiB/s | 915.2 KiB |  00m00s
[137/191] Installing rpm-libs-0:6.1.0-1 100% | 220.1 MiB/s |   1.1 MiB |  00m00s
[138/191] Installing rpm-sign-libs-0:6. 100% |  66.9 MiB/s |  68.5 KiB |  00m00s
[139/191] Installing rpm-build-libs-0:6 100% | 258.6 MiB/s | 264.9 KiB |  00m00s
[140/191] Installing xxhash-libs-0:0.8. 100% |  85.0 MiB/s |  87.0 KiB |  00m00s
[141/191] Installing libverto-0:0.3.2-1 100% |  69.5 MiB/s |  71.1 KiB |  00m00s
[142/191] Installing libcbor-0:0.14.0-3 100% | 137.7 MiB/s | 141.0 KiB |  00m00s
[143/191] Installing libfido2-0:1.17.0- 100% | 138.2 MiB/s | 283.1 KiB |  00m00s
[144/191] Installing libbrotli-0:1.2.0- 100% | 222.5 MiB/s | 911.3 KiB |  00m00s
[145/191] Installing libnghttp2-0:1.69. 100% | 194.4 MiB/s | 199.0 KiB |  00m00s
[146/191] Installing libnghttp3-0:1.18. 100% | 204.2 MiB/s | 209.1 KiB |  00m00s
[147/191] Installing keyutils-libs-0:1. 100% |  97.2 MiB/s |  99.5 KiB |  00m00s
[148/191] Installing libcom_err-0:1.47. 100% | 109.6 MiB/s | 112.2 KiB |  00m00s
[149/191] Installing krb5-libs-0:1.22.2 100% | 253.4 MiB/s |   2.5 MiB |  00m00s
[150/191] Installing libssh-0:0.12.2-1. 100% | 235.5 MiB/s | 723.4 KiB |  00m00s
[151/191] Installing libcurl-0:8.22.0~r 100% | 255.7 MiB/s |   1.0 MiB |  00m00s
[152/191] Installing elfutils-debuginfo 100% |   5.7 MiB/s | 146.3 KiB |  00m00s
[153/191] Installing binutils-0:2.47-1. 100% | 290.2 MiB/s |  31.6 MiB |  00m00s
[154/191] Installing elfutils-0:0.196-1 100% | 108.0 MiB/s |   3.8 MiB |  00m00s
[155/191] Installing gdb-minimal-0:17.2 100% | 218.3 MiB/s |  13.5 MiB |  00m00s
[156/191] Installing debugedit-0:5.3-3. 100% |  13.2 MiB/s | 324.2 KiB |  00m00s
[157/191] Installing curl-0:8.22.0~rc3- 100% |  16.2 MiB/s | 529.4 KiB |  00m00s
[158/191] Installing rpm-0:6.1.0-1.fc46 100% |  58.6 MiB/s |   2.8 MiB |  00m00s
[159/191] Installing cmake-srpm-macros- 100% | 785.2 KiB/s | 804.0   B |  00m00s
[160/191] Installing efi-srpm-macros-0: 100% |  40.3 MiB/s |  41.3 KiB |  00m00s
[161/191] Installing java-srpm-macros-0 100% |   0.0   B/s |   1.1 KiB |  00m00s
[162/191] Installing lua-srpm-macros-0: 100% |   0.0   B/s |   1.9 KiB |  00m00s
[163/191] Installing tree-sitter-srpm-m 100% |   9.4 MiB/s |   9.6 KiB |  00m00s
[164/191] Installing zig-srpm-macros-0: 100% |   0.0   B/s |   1.9 KiB |  00m00s
[165/191] Installing rust-srpm-macros-0 100% |   0.0   B/s |   6.4 KiB |  00m00s
[166/191] Installing qt6-srpm-macros-0: 100% |   0.0   B/s | 748.0   B |  00m00s
[167/191] Installing qt5-srpm-macros-0: 100% |   0.0   B/s | 776.0   B |  00m00s
[168/191] Installing perl-srpm-macros-0 100% | 185.5 KiB/s |   1.1 KiB |  00m00s
[169/191] Installing package-notes-srpm 100% |   0.0   B/s |   2.1 KiB |  00m00s
[170/191] Installing openblas-srpm-macr 100% |   0.0   B/s | 392.0   B |  00m00s
[171/191] Installing ocaml-srpm-macros- 100% |   0.0   B/s |   2.1 KiB |  00m00s
[172/191] Installing kernel-srpm-macros 100% |   0.0   B/s |   2.3 KiB |  00m00s
[173/191] Installing gnome-srpm-macros- 100% |   0.0   B/s |   4.1 KiB |  00m00s
[174/191] Installing gnat-srpm-macros-0 100% |   0.0   B/s |   1.3 KiB |  00m00s
[175/191] Installing ghc-srpm-macros-0: 100% |   0.0   B/s |   1.0 KiB |  00m00s
[176/191] Installing gap-srpm-macros-0: 100% |   0.0   B/s |   2.7 KiB |  00m00s
[177/191] Installing fpc-srpm-macros-0: 100% |   0.0   B/s | 420.0   B |  00m00s
[178/191] Installing ansible-srpm-macro 100% |  35.4 MiB/s |  36.2 KiB |  00m00s
[179/191] Installing rpm-build-0:6.1.0- 100% |  22.6 MiB/s | 626.1 KiB |  00m00s
[180/191] Installing erlang-srpm-macros 100% |   2.4 MiB/s |   2.5 KiB |  00m00s
[181/191] Installing pyproject-srpm-mac 100% |   3.9 MiB/s |   4.0 KiB |  00m00s
[182/191] Installing redhat-rpm-config- 100% |  93.0 MiB/s | 190.4 KiB |  00m00s
[183/191] Installing forge-srpm-macros- 100% |  39.3 MiB/s |  40.3 KiB |  00m00s
[184/191] Installing fonts-srpm-macros- 100% |  55.7 MiB/s |  57.0 KiB |  00m00s
[185/191] Installing go-srpm-macros-0:3 100% |  61.6 MiB/s |  63.0 KiB |  00m00s
[186/191] Installing R-srpm-macros-0:1. 100% |   0.0   B/s |   4.4 KiB |  00m00s
[187/191] Installing python-srpm-macros 100% |  51.7 MiB/s |  52.9 KiB |  00m00s
[188/191] Installing rpm-plugin-selinux 100% |  67.3 MiB/s |  68.9 KiB |  00m00s
[189/191] Installing which-0:2.25-2.fc4 100% |   4.9 MiB/s | 125.3 KiB |  00m00s
[190/191] Installing shadow-utils-2:4.2 100% |  96.6 MiB/s |   4.4 MiB |  00m00s
[191/191] Installing info-0:7.3-3.fc46. 100% |  49.6 KiB/s | 424.1 KiB |  00m09s
Warning: skipped OpenPGP checks for 58 packages from repository: copr_base
Complete!
Updating and loading repositories:
 fedora                                 100% |  60.7 KiB/s |  11.0 KiB |  00m00s
 Additional repo copr_tstellar_fedora_c 100% |  10.6 KiB/s |   1.5 KiB |  00m00s
 Additional repo copr_fedora_llvm_team_ 100% |  10.8 KiB/s |   1.5 KiB |  00m00s
 Copr repository                        100% |  11.5 KiB/s |   1.5 KiB |  00m00s
Repositories loaded.
Package                    Arch    Version                                      Repository                                                   Size
Installing:
 fedora-clang-default-cc   noarch  0:1-1.fc43                                   copr_tstellar_fedora_clang_default_cc                    17.0   B
Installing dependencies:
 annobin-docs              noarch  0:13.28-1.fc45                               fedora                                                   99.7 KiB
 annobin-plugin-gcc        aarch64 0:13.28-1.fc45                               fedora                                                  721.4 KiB
 clang                     aarch64 0:24.0.0~pre20260827.g325a853c12648a-28.fc46 copr_fedora_llvm_team_llvm_snapshots_big_merge_20260827  69.1 MiB
 clang-libs                aarch64 0:24.0.0~pre20260827.g325a853c12648a-28.fc46 copr_fedora_llvm_team_llvm_snapshots_big_merge_20260827 107.2 MiB
 clang-resource-filesystem aarch64 0:24.0.0~pre20260827.g325a853c12648a-28.fc46 copr_fedora_llvm_team_llvm_snapshots_big_merge_20260827  15.3 KiB
 compiler-rt               aarch64 0:24.0.0~pre20260827.g325a853c12648a-28.fc46 copr_fedora_llvm_team_llvm_snapshots_big_merge_20260827  35.4 MiB
 cpp                       aarch64 0:16.2.1-2.fc46                              fedora                                                   40.8 MiB
 expat                     aarch64 0:2.8.3-1.fc46                               fedora                                                  378.4 KiB
 gcc                       aarch64 0:16.2.1-2.fc46                              fedora                                                  112.5 MiB
 gcc-c++                   aarch64 0:16.2.1-2.fc46                              fedora                                                   44.8 MiB
 gcc-plugin-annobin        aarch64 0:16.2.1-2.fc46                              fedora                                                   69.1 KiB
 glibc-devel               aarch64 0:2.44.9000-1.fc46                           fedora                                                    2.3 MiB
 kernel-headers            aarch64 0:7.3.0-0.rc1.18.fc46                        fedora                                                    6.9 MiB
 libasan                   aarch64 0:16.2.1-2.fc46                              fedora                                                    1.5 MiB
 libatomic                 aarch64 0:16.2.1-2.fc46                              fedora                                                   77.7 KiB
 libedit                   aarch64 0:3.1-60.20260512cvs.fc46                    copr_base                                               281.0 KiB
 libmpc                    aarch64 0:1.4.1-2.fc46                               copr_base                                               216.8 KiB
 libomp                    aarch64 0:24.0.0~pre20260827.g325a853c12648a-28.fc46 copr_fedora_llvm_team_llvm_snapshots_big_merge_20260827   2.9 MiB
 libstdc++-devel           aarch64 0:16.2.1-2.fc46                              fedora                                                   40.4 MiB
 libubsan                  aarch64 0:16.2.1-2.fc46                              fedora                                                  475.9 KiB
 libxcrypt-devel           aarch64 0:4.5.2-4.fc45                               fedora                                                   31.0 KiB
 lld                       aarch64 0:24.0.0~pre20260827.g325a853c12648a-28.fc46 copr_fedora_llvm_team_llvm_snapshots_big_merge_20260827  43.0 KiB
 lld-libs                  aarch64 0:24.0.0~pre20260827.g325a853c12648a-28.fc46 copr_fedora_llvm_team_llvm_snapshots_big_merge_20260827   5.9 MiB
 llvm                      aarch64 0:24.0.0~pre20260827.g325a853c12648a-28.fc46 copr_fedora_llvm_team_llvm_snapshots_big_merge_20260827 125.9 MiB
 llvm-filesystem           aarch64 0:24.0.0~pre20260827.g325a853c12648a-28.fc46 copr_fedora_llvm_team_llvm_snapshots_big_merge_20260827   0.0   B
 llvm-libs                 aarch64 0:24.0.0~pre20260827.g325a853c12648a-28.fc46 copr_fedora_llvm_team_llvm_snapshots_big_merge_20260827 138.0 MiB
 make                      aarch64 1:4.4.1-13.fc46                              copr_base                                                 1.8 MiB
 mpdecimal                 aarch64 0:4.0.1-4.fc45                               fedora                                                  281.1 KiB
 python-pip-wheel          noarch  0:26.1.2-5.fc46                              fedora                                                    1.2 MiB
 python3                   aarch64 0:3.15.0~rc1-1.fc45                          fedora                                                   84.8 KiB
 python3-libs              aarch64 0:3.15.0~rc1-1.fc45                          fedora                                                   49.7 MiB
 tzdata                    noarch  0:2026c-1.fc46                               copr_base                                                 1.2 MiB

Transaction Summary:
 Installing:        33 packages

Total size of inbound packages is 203 MiB. Need to download 0 B.
After this operation, 790 MiB extra will be used (install 790 MiB, remove 0 B).
[ 1/33] fedora-clang-default-cc-0:1-1.f 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 2/33] clang-0:24.0.0~pre20260827.g325 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 3/33] gcc-c++-0:16.2.1-2.fc46.aarch64 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 4/33] libstdc++-devel-0:16.2.1-2.fc46 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 5/33] clang-libs-0:24.0.0~pre20260827 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[ 7/33] gcc-0:16.2.1-2.fc46.aarch64     100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 8/33] clang-resource-filesystem-0:24. 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 9/33] llvm-filesystem-0:24.0.0~pre202 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[10/33] cpp-0:16.2.1-2.fc46.aarch64     100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[11/33] glibc-devel-0:2.44.9000-1.fc46. 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[12/33] libasan-0:16.2.1-2.fc46.aarch64 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[13/33] libatomic-0:16.2.1-2.fc46.aarch 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[14/33] libubsan-0:16.2.1-2.fc46.aarch6 100% |   0.0   B/s |   0.0   B |  00m00s
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[15/33] kernel-headers-0:7.3.0-0.rc1.18 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[16/33] libxcrypt-devel-0:4.5.2-4.fc45. 100% |   0.0   B/s |   0.0   B |  00m00s
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[17/33] llvm-0:24.0.0~pre20260827.g325a 100% |   0.0   B/s |   0.0   B |  00m00s
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[18/33] lld-0:24.0.0~pre20260827.g325a8 100% |   0.0   B/s |   0.0   B |  00m00s
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[19/33] libomp-0:24.0.0~pre20260827.g32 100% |   0.0   B/s |   0.0   B |  00m00s
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[20/33] compiler-rt-0:24.0.0~pre2026082 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[21/33] python3-0:3.15.0~rc1-1.fc45.aar 100% |   0.0   B/s |   0.0   B |  00m00s
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[22/33] lld-libs-0:24.0.0~pre20260827.g 100% |   0.0   B/s |   0.0   B |  00m00s
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[23/33] python3-libs-0:3.15.0~rc1-1.fc4 100% |   0.0   B/s |   0.0   B |  00m00s
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[24/33] python-pip-wheel-0:26.1.2-5.fc4 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[25/33] expat-0:2.8.3-1.fc46.aarch64    100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[26/33] mpdecimal-0:4.0.1-4.fc45.aarch6 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[27/33] tzdata-0:2026c-1.fc46.noarch    100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[28/33] libmpc-0:1.4.1-2.fc46.aarch64   100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[29/33] make-1:4.4.1-13.fc46.aarch64    100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[30/33] libedit-0:3.1-60.20260512cvs.fc 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[31/33] annobin-plugin-gcc-0:13.28-1.fc 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[32/33] gcc-plugin-annobin-0:16.2.1-2.f 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[33/33] annobin-docs-0:13.28-1.fc45.noa 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
--------------------------------------------------------------------------------
[33/33] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
Running transaction
[ 1/35] Verify package files            100% |  47.0   B/s |  33.0   B |  00m01s
[ 2/35] Prepare transaction             100% | 532.0   B/s |  33.0   B |  00m00s
[ 3/35] Installing libmpc-0:1.4.1-2.fc4 100% | 106.7 MiB/s | 218.5 KiB |  00m00s
[ 4/35] Installing clang-resource-files 100% |   5.4 MiB/s |  16.7 KiB |  00m00s
[ 5/35] Installing libstdc++-devel-0:16 100% | 397.2 MiB/s |  40.5 MiB |  00m00s
[ 6/35] Installing cpp-0:16.2.1-2.fc46. 100% | 270.1 MiB/s |  40.8 MiB |  00m00s
[ 7/35] Installing annobin-docs-0:13.28 100% |  98.5 MiB/s | 100.8 KiB |  00m00s
[ 8/35] Installing libedit-0:3.1-60.202 100% | 138.0 MiB/s | 282.6 KiB |  00m00s
[ 9/35] Installing make-1:4.4.1-13.fc46 100% |  56.0 MiB/s |   1.8 MiB |  00m00s
[10/35] Installing tzdata-0:2026c-1.fc4 100% |  32.0 MiB/s |   1.5 MiB |  00m00s
[11/35] Installing mpdecimal-0:4.0.1-4. 100% | 138.0 MiB/s | 282.7 KiB |  00m00s
[12/35] Installing expat-0:2.8.3-1.fc46 100% |  14.9 MiB/s | 380.4 KiB |  00m00s
[13/35] Installing python-pip-wheel-0:2 100% | 155.8 MiB/s |   1.2 MiB |  00m00s
[14/35] Installing python3-libs-0:3.15. 100% | 269.4 MiB/s |  50.1 MiB |  00m00s
[15/35] Installing python3-0:3.15.0~rc1 100% |   3.5 MiB/s |  86.6 KiB |  00m00s
[16/35] Installing compiler-rt-0:24.0.0 100% | 553.4 MiB/s |  35.4 MiB |  00m00s
[17/35] Installing kernel-headers-0:7.3 100% | 150.9 MiB/s |   7.1 MiB |  00m00s
[18/35] Installing glibc-devel-0:2.44.9 100% | 131.4 MiB/s |   2.4 MiB |  00m00s
[19/35] Installing libxcrypt-devel-0:4. 100% |  32.5 MiB/s |  33.3 KiB |  00m00s
[20/35] Installing libubsan-0:16.2.1-2. 100% | 232.7 MiB/s | 476.6 KiB |  00m00s
[21/35] Installing libatomic-0:16.2.1-2 100% |  77.0 MiB/s |  78.8 KiB |  00m00s
[22/35] Installing libasan-0:16.2.1-2.f 100% | 256.9 MiB/s |   1.5 MiB |  00m00s
[23/35] Installing gcc-0:16.2.1-2.fc46. 100% | 320.6 MiB/s | 112.5 MiB |  00m00s
[24/35] Installing gcc-c++-0:16.2.1-2.f 100% | 281.8 MiB/s |  44.8 MiB |  00m00s
[25/35] Installing llvm-filesystem-0:24 100% |   1.0 MiB/s |   1.1 KiB |  00m00s
[26/35] Installing llvm-libs-0:24.0.0~p 100% | 378.0 MiB/s | 138.0 MiB |  00m00s
[27/35] Installing clang-libs-0:24.0.0~ 100% | 377.5 MiB/s | 107.2 MiB |  00m00s
[28/35] Installing clang-0:24.0.0~pre20 100% | 483.2 MiB/s |  69.1 MiB |  00m00s
[29/35] Installing llvm-0:24.0.0~pre202 100% | 331.4 MiB/s | 125.9 MiB |  00m00s
[30/35] Installing libomp-0:24.0.0~pre2 100% | 320.7 MiB/s |   2.9 MiB |  00m00s
[31/35] Installing lld-libs-0:24.0.0~pr 100% | 347.4 MiB/s |   5.9 MiB |  00m00s
[32/35] Installing lld-0:24.0.0~pre2026 100% |   1.6 MiB/s |  46.1 KiB |  00m00s
[33/35] Installing fedora-clang-default 100% | 281.2 KiB/s | 288.0   B |  00m00s
[34/35] Installing annobin-plugin-gcc-0 100% |  50.4 MiB/s | 723.1 KiB |  00m00s
[35/35] Installing gcc-plugin-annobin-0 100% | 519.2 KiB/s |  70.6 KiB |  00m00s
Warning: skipped OpenPGP checks for 15 packages from repositories: copr_base, copr_fedora_llvm_team_llvm_snapshots_big_merge_20260827, copr_tstellar_fedora_clang_default_cc
Complete!
Finish: installing minimal buildroot with dnf5
Start: creating root cache
Finish: creating root cache
Finish: chroot init
INFO: Installed packages:
INFO: R-srpm-macros-1.3.7-3.fc45.noarch
add-determinism-0.7.3-3.fc45.aarch64
alternatives-1.33-6.fc46.aarch64
annobin-docs-13.28-1.fc45.noarch
annobin-plugin-gcc-13.28-1.fc45.aarch64
ansible-srpm-macros-1-22.fc45.noarch
audit-libs-4.2.1-2.fc45.aarch64
bash-5.3.15-2.fc46.aarch64
binutils-2.47-1.fc45.aarch64
build-reproducibility-srpm-macros-0.7.3-3.fc45.noarch
bzip2-1.0.8-24.fc46.aarch64
bzip2-libs-1.0.8-24.fc46.aarch64
ca-certificates-2025.2.80_v9.0.304-9.fc45.noarch
clang-24.0.0~pre20260827.g325a853c12648a-28.fc46.aarch64
clang-libs-24.0.0~pre20260827.g325a853c12648a-28.fc46.aarch64
clang-resource-filesystem-24.0.0~pre20260827.g325a853c12648a-28.fc46.aarch64
cmake-srpm-macros-4.3.0-5.fc45.noarch
compiler-rt-24.0.0~pre20260827.g325a853c12648a-28.fc46.aarch64
coreutils-9.11-6.fc45.aarch64
coreutils-common-9.11-6.fc45.aarch64
cpio-2.15-10.fc46.aarch64
cpp-16.2.1-2.fc46.aarch64
crypto-policies-20260713-2.gitc42da77.fc45.noarch
curl-8.22.0~rc3-1.fc46.aarch64
cyrus-sasl-lib-2.1.28-37.fc45.aarch64
debugedit-5.3-3.fc45.aarch64
diffutils-3.12-6.fc45.aarch64
dwz-0.17-3.fc45.aarch64
ed-1.22.6-1.fc46.aarch64
efi-srpm-macros-6-9.fc45.noarch
elfutils-0.196-1.fc46.aarch64
elfutils-debuginfod-client-0.196-1.fc46.aarch64
elfutils-libelf-0.196-1.fc46.aarch64
elfutils-libs-0.196-1.fc46.aarch64
erlang-srpm-macros-0.3.11-2.fc45.noarch
expat-2.8.3-1.fc46.aarch64
fedora-clang-default-cc-1-1.fc43.noarch
fedora-gpg-keys-46-0.3.noarch
fedora-release-46-0.1.noarch
fedora-release-common-46-0.1.noarch
fedora-release-identity-basic-46-0.1.noarch
fedora-repos-46-0.3.noarch
fedora-repos-rawhide-46-0.3.noarch
file-5.48-3.fc46.aarch64
file-libs-5.48-3.fc46.aarch64
filesystem-3.18-59.fc45.aarch64
filesystem-srpm-macros-3.18-59.fc45.noarch
findutils-4.11.0-2.fc45.aarch64
fips-provider-1.5.2-3.fc45.aarch64
fonts-srpm-macros-5.0.0-4.fc45.noarch
forge-srpm-macros-0.4.0-5.fc45.noarch
fpc-srpm-macros-1.3-17.fc45.noarch
gap-srpm-macros-2-3.fc45.noarch
gawk-5.4.1-1.fc46.aarch64
gcc-16.2.1-2.fc46.aarch64
gcc-c++-16.2.1-2.fc46.aarch64
gcc-plugin-annobin-16.2.1-2.fc46.aarch64
gdb-minimal-17.2-4.fc45.aarch64
gdbm-libs-1.23-12.fc45.aarch64
ghc-srpm-macros-1.10-2.fc45.noarch
glibc-2.44.9000-1.fc46.aarch64
glibc-common-2.44.9000-1.fc46.aarch64
glibc-devel-2.44.9000-1.fc46.aarch64
glibc-gconv-extra-2.44.9000-1.fc46.aarch64
glibc-minimal-langpack-2.44.9000-1.fc46.aarch64
gmp-6.3.0-6.fc45.aarch64
gnat-srpm-macros-7-3.fc45.noarch
gnome-srpm-macros-1.0-2.fc45.noarch
gnulib-l10n-20241231-4.fc46.noarch
gnupg2-2.4.9-18.fc46.aarch64
gnupg2-dirmngr-2.4.9-18.fc46.aarch64
gnupg2-gpg-agent-2.4.9-18.fc46.aarch64
gnupg2-gpgconf-2.4.9-18.fc46.aarch64
gnupg2-keyboxd-2.4.9-18.fc46.aarch64
gnupg2-verify-2.4.9-18.fc46.aarch64
gnutls-3.8.13-3.fc45.aarch64
go-srpm-macros-3.8.0-3.fc45.noarch
gpg-pubkey-4f50a6114cd5c6976a7f1179655a4b02f577861e-6888bc98
gpg-pubkey-b2e766fa50ca6fa2d5ed06fc09d879e09488fb64-6a6b46b4
gpg-pubkey-d924b10d3e810dabdd8b56b596e7e91491211fce-697c9899
gpgverify-2.2-5.fc45.noarch
grep-3.12-4.fc45.aarch64
gzip-1.14-4.fc46.aarch64
ima-evm-utils-libs-1.6.2-12.fc46.aarch64
info-7.3-3.fc46.aarch64
jansson-2.14-5.fc46.aarch64
java-srpm-macros-1-9.fc45.noarch
json-c-0.18-9.fc46.aarch64
kernel-headers-7.3.0-0.rc1.18.fc46.aarch64
kernel-srpm-macros-1.0-30.fc45.noarch
keyutils-libs-1.6.3-8.fc46.aarch64
krb5-libs-1.22.2-9.fc45.aarch64
libacl-2.4.0-2.fc45.aarch64
libarchive-3.8.9-1.fc46.aarch64
libasan-16.2.1-2.fc46.aarch64
libassuan-2.5.7-6.fc46.aarch64
libatomic-16.2.1-2.fc46.aarch64
libattr-2.6.0-2.fc46.aarch64
libblkid-2.42.2-3.fc45.aarch64
libbrotli-1.2.0-6.fc46.aarch64
libcap-2.78-2.fc45.aarch64
libcap-ng-0.9.5-1.fc46.aarch64
libcbor-0.14.0-3.fc45.aarch64
libcom_err-1.47.4-2.fc45.aarch64
libcurl-8.22.0~rc3-1.fc46.aarch64
libeconf-0.7.9-4.fc45.aarch64
libedit-3.1-60.20260512cvs.fc46.aarch64
libevent-2.1.12-19.fc46.aarch64
libfdisk-2.42.2-3.fc45.aarch64
libffi-3.5.2-3.fc45.aarch64
libfido2-1.17.0-5.fc45.aarch64
libfsverity-1.7-4.fc45.aarch64
libgcc-16.2.1-2.fc46.aarch64
libgcrypt-1.12.3-1.fc46.aarch64
libgomp-16.2.1-2.fc46.aarch64
libgpg-error-1.61-2.fc46.aarch64
libidn2-2.3.8-4.fc45.aarch64
libksba-1.8.1-1.fc46.aarch64
liblastlog2-2.42.2-3.fc45.aarch64
libmount-2.42.2-3.fc45.aarch64
libmpc-1.4.1-2.fc46.aarch64
libnghttp2-1.69.0-5.fc45.aarch64
libnghttp3-1.18.0-1.fc46.aarch64
libomp-24.0.0~pre20260827.g325a853c12648a-28.fc46.aarch64
libpfm-4.13.0-23.fc45.aarch64
libpkgconf-2.5.1-2.fc45.aarch64
libpsl-0.23.1-1.fc46.aarch64
libselinux-3.11-4.fc45.aarch64
libselinux-utils-3.11-4.fc45.aarch64
libsemanage-3.11-3.fc45.aarch64
libsepol-3.11-2.fc45.aarch64
libsmartcols-2.42.2-3.fc45.aarch64
libssh-0.12.2-1.fc45.aarch64
libssh-config-0.12.2-1.fc45.noarch
libstdc++-16.2.1-2.fc46.aarch64
libstdc++-devel-16.2.1-2.fc46.aarch64
libtasn1-4.21.0-2.fc46.aarch64
libtool-ltdl-2.5.4-11.fc45.aarch64
libubsan-16.2.1-2.fc46.aarch64
libunistring-1.1-12.fc46.aarch64
libusb1-1.0.30-2.fc45.aarch64
libuuid-2.42.2-3.fc45.aarch64
libverto-0.3.2-13.fc45.aarch64
libxcrypt-4.5.2-4.fc45.aarch64
libxcrypt-devel-4.5.2-4.fc45.aarch64
libxml2-2.13.9-4.fc45.aarch64
libzstd-1.5.7-6.fc45.aarch64
linkdupes-0.7.3-3.fc45.aarch64
lld-24.0.0~pre20260827.g325a853c12648a-28.fc46.aarch64
lld-libs-24.0.0~pre20260827.g325a853c12648a-28.fc46.aarch64
llvm-24.0.0~pre20260827.g325a853c12648a-28.fc46.aarch64
llvm-filesystem-24.0.0~pre20260827.g325a853c12648a-28.fc46.aarch64
llvm-libs-24.0.0~pre20260827.g325a853c12648a-28.fc46.aarch64
lua-libs-5.5.1-2.fc46.aarch64
lua-srpm-macros-1-18.fc45.noarch
lz4-libs-1.10.0-5.fc46.aarch64
make-4.4.1-13.fc46.aarch64
mpdecimal-4.0.1-4.fc45.aarch64
mpfr-4.2.2-4.fc45.aarch64
ncurses-base-6.6-3.fc46.noarch
ncurses-libs-6.6-3.fc46.aarch64
nettle-4.0-5.fc45.aarch64
ngtcp2-1.22.1-3.fc45.aarch64
ngtcp2-crypto-ossl-1.22.1-3.fc45.aarch64
npth-1.8-5.fc46.aarch64
ocaml-srpm-macros-11-4.fc45.noarch
openblas-srpm-macros-2-22.fc45.noarch
openldap-2.6.14-1.fc46.aarch64
openssl-libs-4.0.2-1.fc46.aarch64
p11-kit-0.26.5-1.fc45.aarch64
p11-kit-trust-0.26.5-1.fc45.aarch64
package-notes-srpm-macros-0.20-2.fc45.noarch
pam-libs-1.7.2-4.fc45.aarch64
patch-2.8-5.fc46.aarch64
pcre2-10.47-1.fc46.2.aarch64
pcre2-syntax-10.47-1.fc46.2.noarch
perl-srpm-macros-1-65.fc45.noarch
pkgconf-2.5.1-2.fc45.aarch64
pkgconf-m4-2.5.1-2.fc45.noarch
pkgconf-pkg-config-2.5.1-2.fc45.aarch64
policycoreutils-3.11-2.fc46.aarch64
popt-1.19-11.fc46.aarch64
publicsuffix-list-dafsa-20260624-2.fc45.noarch
pyproject-srpm-macros-1.23.2-1.fc45.noarch
python-pip-wheel-26.1.2-5.fc46.noarch
python-srpm-macros-3.15-2.fc45.noarch
python3-3.15.0~rc1-1.fc45.aarch64
python3-libs-3.15.0~rc1-1.fc45.aarch64
qt5-srpm-macros-5.15.18-3.fc45.noarch
qt6-srpm-macros-6.11.2-1.fc46.noarch
readline-8.3-6.fc46.aarch64
redhat-rpm-config-344-5.fc45.noarch
redhat-systemd-presets-102-3.fc45.noarch
redhat-systemd-presets-common-102-3.fc45.noarch
rpm-6.1.0-1.fc46.aarch64
rpm-build-6.1.0-1.fc46.aarch64
rpm-build-libs-6.1.0-1.fc46.aarch64
rpm-libs-6.1.0-1.fc46.aarch64
rpm-plugin-selinux-6.1.0-1.fc46.aarch64
rpm-sequoia-1.10.2-5.fc46.aarch64
rpm-sign-libs-6.1.0-1.fc46.aarch64
rust-srpm-macros-28.5-2.fc45.noarch
sed-4.10-2.fc45.aarch64
selinux-policy-45.15-1.fc46.noarch
selinux-policy-targeted-45.15-1.fc46.noarch
setup-2.15.1-2.fc45.noarch
shadow-utils-4.20.0-1.fc45.aarch64
sqlite-libs-3.53.4-1.fc45.aarch64
systemd-libs-261.2-1.fc45.aarch64
systemd-standalone-sysusers-261.2-1.fc45.aarch64
tar-1.35-9.fc45.aarch64
tpm2-tss-4.2.0-1.fc45.aarch64
tree-sitter-srpm-macros-0.4.6-2.fc45.noarch
tzdata-2026c-1.fc46.noarch
unzip-6.0-71.fc45.aarch64
util-linux-2.42.2-3.fc45.aarch64
util-linux-core-2.42.2-3.fc45.aarch64
which-2.25-2.fc46.aarch64
xxhash-libs-0.8.3-5.fc46.aarch64
xz-5.8.3-2.fc46.aarch64
xz-libs-5.8.3-2.fc46.aarch64
zig-srpm-macros-1-9.fc45.noarch
zip-3.0-46.fc45.aarch64
zlib-ng-compat-2.3.3-6.fc46.aarch64
zstd-1.5.7-6.fc45.aarch64
Start: buildsrpm
Start: rpmbuild -bs
Building target platforms: aarch64
Building for target aarch64
setting SOURCE_DATE_EPOCH=1784678400
Wrote: /builddir/build/SRPMS/bcftools-1.24-2.fc46.src.rpm
Finish: rpmbuild -bs
INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-rawhide-aarch64-1788305910.938784/root/var/log/dnf5.log
INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz
/bin/tar: Removing leading `/' from member names
Finish: buildsrpm
INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-qd0xzr82/bcftools/bcftools.spec) Config(child) 0 minutes 31 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
INFO: Start(/var/lib/copr-rpmbuild/results/bcftools-1.24-2.fc46.src.rpm)  Config(fedora-rawhide-aarch64)
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-aarch64-bootstrap-1788305910.938784/root.
INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-aarch64-bootstrap-1788305910.938784/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-aarch64-1788305910.938784/root.
INFO: calling preinit hooks
INFO: enabled root cache
Start: unpacking root cache
Finish: unpacking root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
INFO: Buildroot is handled by package management downloaded with a bootstrap image:
  rpm-6.1.0-1.fc46.aarch64
  rpm-sequoia-1.10.2-5.fc45.aarch64
  dnf5-5.4.3.0-2.fc46.aarch64
  dnf5-plugins-5.4.3.0-2.fc46.aarch64
Finish: chroot init
Start: build phase for bcftools-1.24-2.fc46.src.rpm
Start: build setup for bcftools-1.24-2.fc46.src.rpm
Building target platforms: aarch64
Building for target aarch64
setting SOURCE_DATE_EPOCH=1784678400
Wrote: /builddir/build/SRPMS/bcftools-1.24-2.fc46.src.rpm
Updating and loading repositories:
 fedora                                 100% |  50.7 KiB/s |  11.0 KiB |  00m00s
 Additional repo copr_tstellar_fedora_c 100% |   9.6 KiB/s |   1.5 KiB |  00m00s
 Additional repo copr_fedora_llvm_team_ 100% |   9.8 KiB/s |   1.5 KiB |  00m00s
 Copr repository                        100% |   9.6 KiB/s |   1.5 KiB |  00m00s
Failed to download metadata (baseurl: "https://download.copr.fedorainfracloud.org/results/@fedora-llvm-team/clang-monthly-fedora-rebuild/fedora-rawhide-aarch64/") for repository "copr_base": Cannot download, all mirrors were already tried without success
WARNING: DNF5 command failed, retrying, attempt #2, sleeping 10s
Updating and loading repositories:
 fedora                                 100% |  52.6 KiB/s |  11.0 KiB |  00m00s
 Additional repo copr_tstellar_fedora_c 100% |   9.9 KiB/s |   1.5 KiB |  00m00s
 Additional repo copr_fedora_llvm_team_ 100% |  10.1 KiB/s |   1.5 KiB |  00m00s
 Copr repository                        100% |   9.8 KiB/s |   1.5 KiB |  00m00s
Repositories loaded.
Package "gcc-16.2.1-2.fc46.aarch64" is already installed.
Package "make-1:4.4.1-13.fc46.aarch64" is already installed.

Package                   Arch    Version                           Repository      Size
Installing:
 autoconf                 noarch  0:2.73-4.fc45                     fedora       2.9 MiB
 automake                 noarch  0:1.18.1-5.fc45                   fedora       1.8 MiB
 gsl-devel                aarch64 0:2.8-4.fc45                      fedora       1.6 MiB
 htslib-devel             aarch64 0:1.24-1.fc46                     copr_base  466.8 KiB
 htslib-tools             aarch64 0:1.24-1.fc46                     copr_base    3.4 MiB
 perl-ExtUtils-Embed      noarch  0:1.35-527.fc45                   fedora      15.6 KiB
 perl-File-Temp           noarch  1:0.231.200-527.fc45              fedora     163.7 KiB
 perl-FindBin             noarch  0:1.54-527.fc45                   fedora       6.8 KiB
 perl-Getopt-Long         noarch  1:2.58-527.fc45                   fedora     144.5 KiB
 perl-interpreter         aarch64 4:5.44.0-527.fc45                 fedora     175.8 KiB
 zlib-ng-compat-devel     aarch64 0:2.3.3-6.fc46                    copr_base  107.0 KiB
Installing dependencies:
 cmake-filesystem         aarch64 0:4.3.0-5.fc45                    fedora       0.0   B
 emacs-filesystem         aarch64 1:30.2-3.fc45                     fedora       0.0   B
 gettext                  aarch64 0:1.0-3.fc46                      copr_base   18.5 MiB
 gettext-common-devel     noarch  0:1.0-3.fc46                      copr_base  596.2 KiB
 gettext-devel            aarch64 0:1.0-3.fc46                      copr_base    1.4 MiB
 gettext-envsubst         aarch64 0:1.0-3.fc46                      copr_base  106.8 KiB
 gettext-libs             aarch64 0:1.0-3.fc46                      copr_base    2.3 MiB
 gettext-runtime          aarch64 0:1.0-3.fc46                      copr_base  785.1 KiB
 groff-base               aarch64 0:1.24.1-2.fc45                   fedora       4.5 MiB
 gsl                      aarch64 0:2.8-4.fc45                      fedora       3.4 MiB
 htslib                   aarch64 0:1.24-1.fc46                     copr_base    1.3 MiB
 libtextstyle             aarch64 0:1.0-3.fc46                      copr_base  265.5 KiB
 m4                       aarch64 0:1.4.21-3.fc45                   fedora     888.6 KiB
 ncurses                  aarch64 0:6.6-3.fc46                      copr_base  895.2 KiB
 perl-AutoLoader          noarch  0:5.74-527.fc45                   fedora      20.6 KiB
 perl-AutoSplit           noarch  0:5.74-527.fc45                   fedora      23.1 KiB
 perl-B                   aarch64 0:1.92-527.fc45                   fedora     557.5 KiB
 perl-Benchmark           noarch  0:1.27-527.fc45                   fedora      36.4 KiB
 perl-Carp                noarch  0:1.54-527.fc45                   fedora      46.6 KiB
 perl-Class-Struct        noarch  0:0.68-527.fc45                   fedora      25.4 KiB
 perl-Data-Dumper         aarch64 0:2.192-528.fc45                  fedora     135.5 KiB
 perl-Devel-PPPort        aarch64 0:3.73-527.fc45                   fedora     917.8 KiB
 perl-Digest              noarch  0:1.20-527.fc45                   fedora      35.2 KiB
 perl-Digest-MD5          aarch64 0:2.59-527.fc45                   fedora     103.6 KiB
 perl-DynaLoader          aarch64 0:1.57-527.fc45                   fedora      32.1 KiB
 perl-Encode              aarch64 4:3.24-527.fc45                   fedora       4.8 MiB
 perl-Errno               aarch64 0:1.39-527.fc45                   fedora       8.4 KiB
 perl-Exporter            noarch  0:5.79-527.fc45                   fedora      54.2 KiB
 perl-ExtUtils-Command    noarch  2:7.78-527.fc45                   fedora       9.6 KiB
 perl-ExtUtils-Constant   noarch  0:0.25-527.fc45                   fedora      85.9 KiB
 perl-ExtUtils-Install    noarch  0:2.22-527.fc45                   fedora      85.5 KiB
 perl-ExtUtils-MakeMaker  noarch  2:7.78-527.fc45                   fedora     740.0 KiB
 perl-ExtUtils-Manifest   noarch  1:1.75-527.fc45                   fedora      84.8 KiB
 perl-ExtUtils-ParseXS    noarch  1:3.64-1.fc45                     fedora     723.3 KiB
 perl-Fcntl               aarch64 0:1.20-527.fc45                   fedora      92.7 KiB
 perl-File-Basename       noarch  0:2.86-527.fc45                   fedora      14.0 KiB
 perl-File-Compare        noarch  0:1.100.800-527.fc45              fedora       5.6 KiB
 perl-File-Copy           noarch  0:2.43-527.fc45                   fedora      19.6 KiB
 perl-File-Find           noarch  0:1.44-527.fc45                   fedora      42.0 KiB
 perl-File-Path           noarch  0:2.18-527.fc45                   fedora      63.4 KiB
 perl-File-stat           noarch  0:1.15-527.fc45                   fedora      13.7 KiB
 perl-FileHandle          noarch  0:2.05-527.fc45                   fedora       9.4 KiB
 perl-Getopt-Std          noarch  0:1.15-527.fc45                   fedora      12.5 KiB
 perl-HTTP-Tiny           noarch  0:0.096-528.fc45                  fedora     162.4 KiB
 perl-Hash-Util           aarch64 0:0.32-527.fc45                   fedora      98.9 KiB
 perl-Hash-Util-FieldHash aarch64 0:1.27-527.fc45                   fedora     106.5 KiB
 perl-IO                  aarch64 0:1.56-527.fc45                   fedora     191.3 KiB
 perl-IO-Socket-IP        noarch  0:0.44-527.fc45                   fedora     100.5 KiB
 perl-IO-Socket-SSL       noarch  0:2.099-2.fc45                    fedora     726.9 KiB
 perl-IPC-Open3           noarch  0:1.24-527.fc45                   fedora      27.7 KiB
 perl-MIME-Base32         noarch  0:1.303-26.fc45                   fedora      30.7 KiB
 perl-MIME-Base64         aarch64 0:3.16-527.fc45                   fedora      93.9 KiB
 perl-Net-SSLeay          aarch64 0:1.96-5.fc45                     fedora       1.4 MiB
 perl-POSIX               aarch64 0:2.26-527.fc45                   fedora     261.4 KiB
 perl-PathTools           aarch64 0:3.95-527.fc45                   fedora     224.0 KiB
 perl-Pod-Escapes         noarch  1:1.07-527.fc45                   fedora      24.9 KiB
 perl-Pod-Perldoc         noarch  0:3.28.01-527.fc45                fedora     163.8 KiB
 perl-Pod-Simple          noarch  1:3.48-527.fc45                   fedora     565.2 KiB
 perl-Pod-Usage           noarch  4:2.05-527.fc45                   fedora      86.3 KiB
 perl-Scalar-List-Utils   aarch64 5:1.70-527.fc45                   fedora     152.9 KiB
 perl-SelectSaver         noarch  0:1.03-527.fc45                   fedora       2.1 KiB
 perl-Socket              aarch64 4:2.043-1.fc46                    fedora     145.8 KiB
 perl-Storable            aarch64 1:3.41-527.fc45                   fedora     242.9 KiB
 perl-Symbol              noarch  0:1.09-527.fc45                   fedora       6.8 KiB
 perl-Term-ANSIColor      noarch  0:5.01-527.fc45                   fedora      97.5 KiB
 perl-Term-Cap            noarch  0:1.18-527.fc45                   fedora      29.3 KiB
 perl-Test-Harness        noarch  1:3.52-528.fc45                   fedora     560.9 KiB
 perl-Text-ParseWords     noarch  0:3.31-527.fc45                   fedora      13.6 KiB
 perl-Text-Tabs+Wrap      noarch  0:2024.001-527.fc45               fedora      22.6 KiB
 perl-Thread-Queue        noarch  0:3.14-527.fc45                   fedora      28.9 KiB
 perl-Time-HiRes          aarch64 4:1.9780-527.fc45                 fedora     151.7 KiB
 perl-Time-Local          noarch  2:1.350-527.fc45                  fedora      69.0 KiB
 perl-URI                 noarch  0:5.36-1.fc46                     fedora     275.3 KiB
 perl-Unicode-Normalize   aarch64 0:1.32-527.fc45                   fedora     524.5 KiB
 perl-base                noarch  0:2.27-527.fc45                   fedora      12.6 KiB
 perl-constant            noarch  0:1.33-528.fc45                   fedora      26.3 KiB
 perl-devel               aarch64 4:5.44.0-527.fc45                 fedora       4.1 MiB
 perl-fields              noarch  0:2.27-527.fc45                   fedora      11.9 KiB
 perl-if                  noarch  0:0.61.000-527.fc45               fedora       5.8 KiB
 perl-lib                 aarch64 0:0.65-527.fc45                   fedora       8.5 KiB
 perl-libnet              noarch  0:3.15-528.fc45                   fedora     288.4 KiB
 perl-libs                aarch64 4:5.44.0-527.fc45                 fedora      12.0 MiB
 perl-locale              noarch  0:1.13-527.fc45                   fedora       6.1 KiB
 perl-mro                 aarch64 0:1.30-527.fc45                   fedora      81.5 KiB
 perl-overload            noarch  0:1.40-527.fc45                   fedora      71.6 KiB
 perl-overloading         noarch  0:0.03-527.fc45                   fedora       4.8 KiB
 perl-parent              noarch  1:0.244-527.fc45                  fedora      10.3 KiB
 perl-podlators           noarch  1:6.1.0-2.fc45                    fedora     324.7 KiB
 perl-threads             aarch64 1:2.45-527.fc45                   fedora     134.9 KiB
 perl-threads-shared      aarch64 0:1.73-527.fc45                   fedora     103.6 KiB
 perl-vars                noarch  0:1.05-527.fc45                   fedora       3.9 KiB
 perl-version             aarch64 9:0.99.34-527.fc45                fedora     160.8 KiB
 python3-pyparsing        noarch  0:3.1.2-18.fc45                   fedora       1.0 MiB
 systemtap-sdt-devel      aarch64 0:5.6~pre17846435g2da140e3-2.fc45 fedora     189.2 KiB
 systemtap-sdt-dtrace     aarch64 0:5.6~pre17846435g2da140e3-2.fc45 fedora     185.8 KiB

Transaction Summary:
 Installing:       106 packages

Total size of inbound packages is 20 MiB. Need to download 3 MiB.
After this operation, 80 MiB extra will be used (install 80 MiB, remove 0 B).
[  1/106] autoconf-0:2.73-4.fc45.noarch 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[  2/106] automake-0:1.18.1-5.fc45.noar 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[  3/106] perl-File-Temp-1:0.231.200-52 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[  4/106] perl-Getopt-Long-1:2.58-527.f 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[  5/106] perl-interpreter-4:5.44.0-527 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[  6/106] zlib-ng-compat-devel-0:2.3.3- 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[  7/106] emacs-filesystem-1:30.2-3.fc4 100% |   0.0   B/s |   0.0   B |  00m00s
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[  8/106] perl-Carp-0:1.54-527.fc45.noa 100% |   0.0   B/s |   0.0   B |  00m00s
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[  9/106] perl-Data-Dumper-0:2.192-528. 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 10/106] perl-Exporter-0:5.79-527.fc45 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 11/106] perl-Text-ParseWords-0:3.31-5 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 12/106] perl-constant-0:1.33-528.fc45 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 13/106] perl-File-Path-0:2.18-527.fc4 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 14/106] perl-Thread-Queue-0:3.14-527. 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 15/106] perl-threads-1:2.45-527.fc45. 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 16/106] perl-Scalar-List-Utils-5:1.70 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 17/106] perl-parent-1:0.244-527.fc45. 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 18/106] perl-Pod-Usage-4:2.05-527.fc4 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 19/106] perl-libs-4:5.44.0-527.fc45.a 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 20/106] cmake-filesystem-0:4.3.0-5.fc 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 21/106] perl-threads-shared-0:1.73-52 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 22/106] perl-Pod-Perldoc-0:3.28.01-52 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 23/106] perl-podlators-1:6.1.0-2.fc45 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 24/106] perl-Encode-4:3.24-527.fc45.a 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 25/106] perl-HTTP-Tiny-0:0.096-528.fc 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 26/106] perl-Pod-Simple-1:3.48-527.fc 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 27/106] perl-Term-ANSIColor-0:5.01-52 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 28/106] perl-Term-Cap-0:1.18-527.fc45 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 29/106] perl-MIME-Base64-0:3.16-527.f 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 30/106] perl-Storable-1:3.41-527.fc45 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 31/106] perl-Errno-0:1.39-527.fc45.aa 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 32/106] perl-Fcntl-0:1.20-527.fc45.aa 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 33/106] perl-IO-0:1.56-527.fc45.aarch 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 34/106] perl-IO-Socket-SSL-0:2.099-2. 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 35/106] perl-Net-SSLeay-0:1.96-5.fc45 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 36/106] perl-Socket-4:2.043-1.fc46.aa 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 37/106] perl-Time-HiRes-4:1.9780-527. 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 38/106] perl-Time-Local-2:1.350-527.f 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 39/106] perl-PathTools-0:3.95-527.fc4 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 40/106] perl-Pod-Escapes-1:1.07-527.f 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 41/106] perl-Text-Tabs+Wrap-0:2024.00 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 42/106] perl-devel-4:5.44.0-527.fc45. 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 43/106] perl-POSIX-0:2.26-527.fc45.aa 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 44/106] perl-B-0:1.92-527.fc45.aarch6 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 45/106] perl-IO-Socket-IP-0:0.44-527. 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 46/106] perl-URI-0:5.36-1.fc46.noarch 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 47/106] perl-Devel-PPPort-0:3.73-527. 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 48/106] perl-ExtUtils-Install-0:2.22- 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 49/106] perl-ExtUtils-ParseXS-1:3.64- 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 50/106] perl-MIME-Base32-0:1.303-26.f 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 51/106] perl-Unicode-Normalize-0:1.32 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 52/106] perl-libnet-0:3.15-528.fc45.n 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 53/106] perl-ExtUtils-MakeMaker-2:7.7 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 54/106] perl-Digest-MD5-0:2.59-527.fc 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 55/106] perl-ExtUtils-Command-2:7.78- 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 56/106] perl-ExtUtils-Manifest-1:1.75 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 57/106] perl-Test-Harness-1:3.52-528. 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 58/106] perl-version-9:0.99.34-527.fc 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 61/106] perl-locale-0:1.13-527.fc45.n 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 62/106] perl-overload-0:1.40-527.fc45 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 64/106] perl-File-Basename-0:2.86-527 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 65/106] perl-overloading-0:0.03-527.f 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 66/106] perl-DynaLoader-0:1.57-527.fc 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 67/106] perl-FileHandle-0:2.05-527.fc 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 70/106] perl-File-Compare-0:1.100.800 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 71/106] perl-vars-0:1.05-527.fc45.noa 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 76/106] perl-Benchmark-0:1.27-527.fc4 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 79/106] groff-base-0:1.24.1-2.fc45.aa 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 80/106] perl-IPC-Open3-0:1.24-527.fc4 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 81/106] perl-AutoLoader-0:5.74-527.fc 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 82/106] perl-File-stat-0:1.15-527.fc4 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 83/106] perl-SelectSaver-0:1.03-527.f 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 84/106] perl-Class-Struct-0:0.68-527. 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 85/106] perl-fields-0:2.27-527.fc45.n 100% |   0.0   B/s |   0.0   B |  00m00s
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>>> Already downloaded
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>>> Already downloaded
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>>> Already downloaded
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>>> Already downloaded
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>>> Already downloaded
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>>> Already downloaded
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>>> Already downloaded
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>>> Already downloaded
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>>> Already downloaded
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>>> Already downloaded
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>>> Already downloaded
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>>> Already downloaded
[100/106] htslib-devel-0:1.24-1.fc46.aa 100% |  17.8 MiB/s | 109.4 KiB |  00m00s
[101/106] htslib-tools-0:1.24-1.fc46.aa 100% |  57.8 MiB/s | 651.2 KiB |  00m00s
[102/106] perl-ExtUtils-Embed-0:1.35-52 100% |   2.4 MiB/s |  17.4 KiB |  00m00s
[103/106] perl-FindBin-0:1.54-527.fc45. 100% |   3.4 MiB/s |  13.9 KiB |  00m00s
[104/106] gsl-devel-0:2.8-4.fc45.aarch6 100% |  45.7 MiB/s | 655.1 KiB |  00m00s
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[106/106] gsl-0:2.8-4.fc45.aarch64      100% |  82.1 MiB/s |   1.1 MiB |  00m00s
--------------------------------------------------------------------------------
[106/106] Total                         100% |  51.7 MiB/s |   3.0 MiB |  00m00s
Running transaction
[  1/108] Verify package files          100% |   1.4 KiB/s | 106.0   B |  00m00s
[  2/108] Prepare transaction           100% |   2.0 KiB/s | 106.0   B |  00m00s
[  3/108] Installing libtextstyle-0:1.0 100% | 130.0 MiB/s | 266.3 KiB |  00m00s
[  4/108] Installing gettext-libs-0:1.0 100% | 286.1 MiB/s |   2.3 MiB |  00m00s
[  5/108] Installing htslib-0:1.24-1.fc 100% | 214.2 MiB/s |   1.3 MiB |  00m00s
[  6/108] Installing m4-0:1.4.21-3.fc45 100% |  32.4 MiB/s | 895.1 KiB |  00m00s
[  7/108] Installing gettext-envsubst-0 100% |   4.4 MiB/s | 108.2 KiB |  00m00s
[  8/108] Installing gettext-runtime-0: 100% |  27.7 MiB/s | 795.6 KiB |  00m00s
[  9/108] Installing gettext-0:1.0-3.fc 100% | 303.7 MiB/s |  18.5 MiB |  00m00s
[ 10/108] Installing gettext-common-dev 100% | 582.5 MiB/s | 596.5 KiB |  00m00s
[ 11/108] Installing gettext-devel-0:1. 100% |  42.7 MiB/s |   1.5 MiB |  00m00s
[ 12/108] Installing groff-base-0:1.24. 100% |  95.9 MiB/s |   4.5 MiB |  00m00s
[ 13/108] Installing ncurses-0:6.6-3.fc 100% |  33.9 MiB/s | 901.8 KiB |  00m00s
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[ 29/108] Installing perl-locale-0:1.13 100% |   0.0   B/s |   6.5 KiB |  00m00s
[ 30/108] Installing perl-if-0:0.61.000 100% |   0.0   B/s |   6.2 KiB |  00m00s
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[ 33/108] Installing perl-Time-HiRes-4: 100% | 150.1 MiB/s | 153.7 KiB |  00m00s
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[ 40/108] Installing perl-POSIX-0:2.26- 100% | 256.5 MiB/s | 262.7 KiB |  00m00s
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[ 49/108] Installing perl-IO-0:1.56-527 100% |  95.5 MiB/s | 195.6 KiB |  00m00s
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[ 54/108] Installing perl-Text-ParseWor 100% |  14.2 MiB/s |  14.6 KiB |  00m00s
[ 55/108] Installing perl-Getopt-Long-1 100% | 143.8 MiB/s | 147.2 KiB |  00m00s
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[ 61/108] Installing perl-Errno-0:1.39- 100% |   0.0   B/s |   8.8 KiB |  00m00s
[ 62/108] Installing perl-MIME-Base64-0 100% |  93.9 MiB/s |  96.1 KiB |  00m00s
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[ 64/108] Installing perl-Scalar-List-U 100% |  76.5 MiB/s | 156.6 KiB |  00m00s
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[ 66/108] Installing perl-Encode-4:3.24 100% | 130.9 MiB/s |   4.8 MiB |  00m00s
[ 67/108] Installing perl-DynaLoader-0: 100% |  31.7 MiB/s |  32.5 KiB |  00m00s
[ 68/108] Installing perl-PathTools-0:3 100% | 111.6 MiB/s | 228.6 KiB |  00m00s
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[ 70/108] Installing perl-Carp-0:1.54-5 100% |  23.3 MiB/s |  47.7 KiB |  00m00s
[ 71/108] Installing perl-libs-4:5.44.0 100% | 234.0 MiB/s |  12.2 MiB |  00m00s
[ 72/108] Installing perl-interpreter-4 100% |   7.2 MiB/s | 177.5 KiB |  00m00s
[ 73/108] Installing perl-File-Find-0:1 100% |  41.5 MiB/s |  42.5 KiB |  00m00s
[ 74/108] Installing perl-File-Copy-0:2 100% |   0.0   B/s |  20.2 KiB |  00m00s
[ 75/108] Installing perl-File-Compare- 100% |   0.0   B/s |   6.2 KiB |  00m00s
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[ 78/108] Installing perl-Thread-Queue- 100% |  29.7 MiB/s |  30.4 KiB |  00m00s
[ 79/108] Installing perl-ExtUtils-Comm 100% |   0.0   B/s |  10.2 KiB |  00m00s
[ 80/108] Installing perl-ExtUtils-Mani 100% |  84.3 MiB/s |  86.3 KiB |  00m00s
[ 81/108] Installing perl-Devel-PPPort- 100% | 299.5 MiB/s | 920.2 KiB |  00m00s
[ 82/108] Installing perl-version-9:0.9 100% |  79.9 MiB/s | 163.6 KiB |  00m00s
[ 83/108] Installing perl-ExtUtils-Cons 100% |  85.7 MiB/s |  87.7 KiB |  00m00s
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[ 85/108] Installing perl-Test-Harness- 100% |  19.7 MiB/s | 583.7 KiB |  00m00s
[ 86/108] Installing perl-Hash-Util-Fie 100% | 105.6 MiB/s | 108.1 KiB |  00m00s
[ 87/108] Installing perl-Hash-Util-0:0 100% |  98.0 MiB/s | 100.3 KiB |  00m00s
[ 88/108] Installing perl-fields-0:2.27 100% |   0.0   B/s |  12.3 KiB |  00m00s
[ 89/108] Installing perl-ExtUtils-Pars 100% |  27.4 MiB/s | 729.2 KiB |  00m00s
[ 90/108] Installing perl-lib-0:0.65-52 100% |   8.7 MiB/s |   8.9 KiB |  00m00s
[ 91/108] Installing perl-AutoSplit-0:5 100% |  23.0 MiB/s |  23.6 KiB |  00m00s
[ 92/108] Installing perl-ExtUtils-Make 100% |  27.1 MiB/s | 750.6 KiB |  00m00s
[ 93/108] Installing perl-ExtUtils-Inst 100% |  85.2 MiB/s |  87.2 KiB |  00m00s
[ 94/108] Installing python3-pyparsing- 100% | 259.6 MiB/s |   1.0 MiB |  00m00s
[ 95/108] Installing systemtap-sdt-dtra 100% |   7.6 MiB/s | 187.1 KiB |  00m00s
[ 96/108] Installing systemtap-sdt-deve 100% |  93.1 MiB/s | 190.7 KiB |  00m00s
[ 97/108] Installing perl-devel-4:5.44. 100% | 116.8 MiB/s |   4.1 MiB |  00m00s
[ 98/108] Installing cmake-filesystem-0 100% |   4.6 MiB/s |   9.4 KiB |  00m00s
[ 99/108] Installing gsl-0:2.8-4.fc45.a 100% | 102.2 MiB/s |   3.4 MiB |  00m00s
[100/108] Installing emacs-filesystem-1 100% | 793.0 KiB/s | 812.0   B |  00m00s
[101/108] Installing autoconf-0:2.73-4. 100% |  90.0 MiB/s |   2.9 MiB |  00m00s
[102/108] Installing automake-0:1.18.1- 100% |  57.4 MiB/s |   1.8 MiB |  00m00s
[103/108] Installing gsl-devel-0:2.8-4. 100% |  52.1 MiB/s |   1.7 MiB |  00m00s
[104/108] Installing zlib-ng-compat-dev 100% | 106.0 MiB/s | 108.6 KiB |  00m00s
[105/108] Installing perl-ExtUtils-Embe 100% |   0.0   B/s |  16.1 KiB |  00m00s
[106/108] Installing perl-FindBin-0:1.5 100% |   0.0   B/s |   7.2 KiB |  00m00s
[107/108] Installing htslib-devel-0:1.2 100% | 230.2 MiB/s | 471.4 KiB |  00m00s
[108/108] Installing htslib-tools-0:1.2 100% |  24.3 MiB/s |   3.4 MiB |  00m00s
Warning: skipped OpenPGP checks for 12 packages from repository: copr_base
Complete!
Building target platforms: aarch64
Building for target aarch64
setting SOURCE_DATE_EPOCH=1784678400
Wrote: /builddir/build/SRPMS/bcftools-1.24-2.fc46.src.rpm
Updating and loading repositories:
 fedora                                 100% |  62.5 KiB/s |  11.0 KiB |  00m00s
 Additional repo copr_tstellar_fedora_c 100% |  10.7 KiB/s |   1.5 KiB |  00m00s
 Additional repo copr_fedora_llvm_team_ 100% |  11.0 KiB/s |   1.5 KiB |  00m00s
 Copr repository                        100% |  10.7 KiB/s |   1.5 KiB |  00m00s
Repositories loaded.
Package "autoconf-2.73-4.fc45.noarch" is already installed.
Package "automake-1.18.1-5.fc45.noarch" is already installed.
Package "gcc-16.2.1-2.fc46.aarch64" is already installed.
Package "gsl-devel-2.8-4.fc45.aarch64" is already installed.
Package "htslib-devel-1.24-1.fc46.aarch64" is already installed.
Package "htslib-tools-1.24-1.fc46.aarch64" is already installed.
Package "make-1:4.4.1-13.fc46.aarch64" is already installed.
Package "perl-ExtUtils-Embed-1.35-527.fc45.noarch" is already installed.
Package "perl-File-Temp-1:0.231.200-527.fc45.noarch" is already installed.Nothing to do.

Package "perl-FindBin-1.54-527.fc45.noarch" is already installed.
Package "perl-Getopt-Long-1:2.58-527.fc45.noarch" is already installed.
Package "perl-interpreter-4:5.44.0-527.fc45.aarch64" is already installed.
Package "zlib-ng-compat-devel-2.3.3-6.fc46.aarch64" is already installed.

Finish: build setup for bcftools-1.24-2.fc46.src.rpm
Start: rpmbuild bcftools-1.24-2.fc46.src.rpm
Building target platforms: aarch64
Building for target aarch64
setting SOURCE_DATE_EPOCH=1784678400
Executing(mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.tOgdcR
Creating(rpmbuild.env): /builddir/build/BUILD/bcftools-1.24-build/rpmbuild.env
  RPM_SOURCE_DIR="/builddir/build/SOURCES"
  RPM_BUILD_DIR="/builddir/build/BUILD/bcftools-1.24-build"
  RPM_OPT_FLAGS="-O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer"
  RPM_LD_FLAGS="-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1   "
  RPM_ARCH="aarch64"
  RPM_OS="linux"
  RPM_BUILD_NCPUS="4"
  RPM_SPECPARTS_DIR="/builddir/build/BUILD/bcftools-1.24-build/SPECPARTS"
  export RPM_SOURCE_DIR RPM_BUILD_DIR RPM_OPT_FLAGS RPM_ARCH RPM_OS RPM_BUILD_NCPUS RPM_SPECPARTS_DIR RPM_LD_FLAGS
  RPM_DOC_DIR="/usr/share/doc"
  export RPM_DOC_DIR
  RPM_PACKAGE_NAME="bcftools"
  RPM_PACKAGE_VERSION="1.24"
  RPM_PACKAGE_RELEASE="2.fc46"
  export RPM_PACKAGE_NAME RPM_PACKAGE_VERSION RPM_PACKAGE_RELEASE
  LANG=C.UTF-8
  export LANG
  unset CDPATH DISPLAY ||:
  unset DEBUGINFOD_URLS ||:
  unset RPM_CONFIG_DIR ||:
  RPM_BUILD_ROOT="/builddir/build/BUILD/bcftools-1.24-build/BUILDROOT"
  export RPM_BUILD_ROOT
  
  PKG_CONFIG_PATH="${PKG_CONFIG_PATH}:/usr/lib64/pkgconfig:/usr/share/pkgconfig"
  export PKG_CONFIG_PATH
  CONFIG_SITE=${CONFIG_SITE:-NONE}
  export CONFIG_SITE
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.T9Mz3j
+ umask 022
+ cd /builddir/build/BUILD/bcftools-1.24-build
+ cd /builddir/build/BUILD/bcftools-1.24-build
+ rm -rf bcftools-1.24
+ /usr/bin/rpmuncompress -x /builddir/build/SOURCES/bcftools-1.24.tar.bz2
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd bcftools-1.24
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ sed -i '1s|/usr/bin/env perl|/usr/bin/perl|' misc/color-chrs.pl misc/demo-flt.pl misc/run-roh.pl misc/vcfutils.pl misc/plot-vcfstats
+ sed -i '1s|/usr/bin/env python3\{0,1\}|/usr/bin/python3|' misc/gff2gff.py misc/guess-ploidy.py misc/plot-roh.py
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.I0AbX3
+ umask 022
+ cd /builddir/build/BUILD/bcftools-1.24-build
+ CFLAGS='-O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules  '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules  '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1   '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=clang
+ export CC
+ CXX=clang++
+ export CXX
+ cd bcftools-1.24
+ autoreconf -fiv
autoreconf: export WARNINGS=
autoreconf: Entering directory '.'
autoreconf: configure.ac: no obvious need to run autopoint
autoreconf: running: aclocal --force 
autoreconf: configure.ac: tracing
autoreconf: configure.ac: subdirectory $HTSDIR not present
autoreconf: configure.ac: not using Libtool
autoreconf: configure.ac: not using Intltool
autoreconf: configure.ac: not using Gtkdoc
autoreconf: configure.ac: no need to run autopoint (confirmed)
autoreconf: running: /usr/bin/autoconf --force
configure.ac:94: warning: _AC_CONFIG_SUBDIRS: you should use literals
./lib/autoconf/status.m4:1100: AC_CONFIG_SUBDIRS is expanded from...
m4/ax_with_htslib.m4:55: AX_WITH_HTSLIB is expanded from...
configure.ac:94: the top level
autoreconf: running: /usr/bin/autoheader --force
autoreconf: configure.ac: not using Automake
autoreconf: configure.ac: not running make: --make not given
autoreconf: Leaving directory '.'
+ CFLAGS='-O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules  '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules  '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1   '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=clang
+ export CC
+ CXX=clang++
+ export CXX
+ '[' '-flto=thin -ffat-lto-objectsx' '!=' x ']'
++ find . -type f -name configure -print
+ for file in $(find . -type f -name configure -print)
+ /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\) = /__attribute__ ((used)) char (*f) () = /g' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\);/__attribute__ ((used)) char (*f) ();/g' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed -r --in-place=.backup 's/^char \$2 \(\);/__attribute__ ((used)) char \$2 ();/g' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed --in-place=.backup '1{$!N;$!N};$!N;s/int x = 1;\nint y = 0;\nint z;\nint nan;/volatile int x = 1; volatile int y = 0; volatile int z, nan;/;P;D' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed -r --in-place=.backup '/lt_cv_sys_global_symbol_to_cdecl=/s#(".*"|'\''.*'\'')#"sed -n -e '\''s/^T .* \\(.*\\)$/extern int \\1();/p'\'' -e '\''s/^$symcode* .* \\(.*\\)$/extern char \\1;/p'\''"#' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ for file in $(find . -type f -name configure -print)
+ /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\) = /__attribute__ ((used)) char (*f) () = /g' ./htslib-1.24/configure
+ diff -u ./htslib-1.24/configure.backup ./htslib-1.24/configure
+ mv ./htslib-1.24/configure.backup ./htslib-1.24/configure
+ /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\);/__attribute__ ((used)) char (*f) ();/g' ./htslib-1.24/configure
+ diff -u ./htslib-1.24/configure.backup ./htslib-1.24/configure
+ mv ./htslib-1.24/configure.backup ./htslib-1.24/configure
+ /usr/bin/sed -r --in-place=.backup 's/^char \$2 \(\);/__attribute__ ((used)) char \$2 ();/g' ./htslib-1.24/configure
+ diff -u ./htslib-1.24/configure.backup ./htslib-1.24/configure
+ mv ./htslib-1.24/configure.backup ./htslib-1.24/configure
+ /usr/bin/sed --in-place=.backup '1{$!N;$!N};$!N;s/int x = 1;\nint y = 0;\nint z;\nint nan;/volatile int x = 1; volatile int y = 0; volatile int z, nan;/;P;D' ./htslib-1.24/configure
+ diff -u ./htslib-1.24/configure.backup ./htslib-1.24/configure
+ mv ./htslib-1.24/configure.backup ./htslib-1.24/configure
+ /usr/bin/sed -r --in-place=.backup '/lt_cv_sys_global_symbol_to_cdecl=/s#(".*"|'\''.*'\'')#"sed -n -e '\''s/^T .* \\(.*\\)$/extern int \\1();/p'\'' -e '\''s/^$symcode* .* \\(.*\\)$/extern char \\1;/p'\''"#' ./htslib-1.24/configure
+ diff -u ./htslib-1.24/configure.backup ./htslib-1.24/configure
+ mv ./htslib-1.24/configure.backup ./htslib-1.24/configure
+ '[' 1 = 1 ']'
+++ dirname ./configure
++ find . -name config.guess -o -name config.sub
+ for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub)
++ basename ./htslib-1.24/config.guess
+ '[' -f /usr/lib/rpm/redhat/config.guess ']'
+ /usr/bin/rm -f ./htslib-1.24/config.guess
++ basename ./htslib-1.24/config.guess
+ /usr/bin/cp -fv /usr/lib/rpm/redhat/config.guess ./htslib-1.24/config.guess
'/usr/lib/rpm/redhat/config.guess' -> './htslib-1.24/config.guess'
+ for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub)
++ basename ./htslib-1.24/config.sub
+ '[' -f /usr/lib/rpm/redhat/config.sub ']'
+ /usr/bin/rm -f ./htslib-1.24/config.sub
++ basename ./htslib-1.24/config.sub
+ /usr/bin/cp -fv /usr/lib/rpm/redhat/config.sub ./htslib-1.24/config.sub
'/usr/lib/rpm/redhat/config.sub' -> './htslib-1.24/config.sub'
+ '[' 1 = 1 ']'
+ '[' x '!=' 'x-Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg' ']'
++ find . -name ltmain.sh
++ grep -q runstatedir=DIR ./configure
++ echo --runstatedir=/run
+ ./configure --build=aarch64-redhat-linux --host=aarch64-redhat-linux --program-prefix= --disable-dependency-tracking --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/bin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib64 --libexecdir=/usr/libexec --localstatedir=/var --runstatedir=/run --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info 'CFLAGS=-O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer' 'LDFLAGS=-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1   ' --prefix=/usr --with-htslib=system --enable-perl-filters --enable-libgsl '--with-bcf-plugin-path=/usr/local/libexec/bcftools:$(plugindir)'
checking for aarch64-redhat-linux-gcc... clang
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C... yes
checking whether clang accepts -g... yes
checking for clang option to enable C23 features... -std=gnu23
checking for grep that handles long lines and -e... /usr/bin/grep
checking for C compiler warning flags... -Wall
checking for clang -std=gnu23 option to support large files... none needed
checking for htslib/sam.h... yes
checking for hts_version in -lhts... yes
checking shared library type... plain .so
checking for library containing dlopen... none required
checking if the compiler accepts -rdynamic... yes
checking for zlib.h... yes
checking for inflate in -lz... yes
checking for gsl/gsl_version.h... yes
checking for library containing cblas_dgemm... -lgslcblas
checking for gsl_multifit_gradient in -lgsl... yes
configure: removing -specs=...redhat-hardened... from Perl options
checking for library containing Perl_call_pv... -lperl
checking for library containing regcomp... none required
configure: creating ./config.status
config.status: creating config.mk
config.status: creating config.h
configure: License has been changed to GPL.

Linking against the GNU scientific library requires that the resulting
binary is licensed using the GNU General Public License.  In particular,
this means you will have to follow the terms of this license in order
to distribute binary copies.  For more information see the INSTALL file.

Text of the GNU General Public License can be found in the LICENSE file,
or at http://www.gnu.org/copyleft/gpl.html

Information on the GNU Scientific Library, including the rationale for
its choice of license can be found at https://www.gnu.org/software/gsl/

+ /usr/bin/make -O -j4 V=1 VERBOSE=1
echo '#define BCFTOOLS_VERSION "1.24"' > version.h
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o tabix.o tabix.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o vcfindex.o vcfindex.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o vcfisec.o vcfisec.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o vcfquery.o vcfquery.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o vcffilter.o vcffilter.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o vcfstats.o vcfstats.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o vcfsom.o vcfsom.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o vcfgtcheck.o vcfgtcheck.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o vcfview.o vcfview.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o vcfmerge.o vcfmerge.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o vcfnorm.o vcfnorm.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o vcfroh.o vcfroh.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o vcfconcat.o vcfconcat.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -D_REENTRANT -D_GNU_SOURCE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fwrapv -fno-strict-aliasing -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/lib64/perl5/CORE -c -o filter.o filter.c
clang: warning: argument unused during compilation: '-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1' [-Wunused-command-line-argument]
warning: unknown warning option '-Wno-complain-wrong-lang'; did you mean '-Wno-c++11-long-long'? [-Wunknown-warning-option]
1 warning generated.
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o vcmp.o vcmp.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o gvcf.o gvcf.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o vcfcall.o vcfcall.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o mcall.o mcall.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o vcfannotate.o vcfannotate.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o reheader.o reheader.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o tsv2vcf.o tsv2vcf.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o vcfhead.o vcfhead.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o vcfcnv.o vcfcnv.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o vcfconvert.o vcfconvert.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o HMM.o HMM.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o convert.o convert.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o bin.o bin.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o ploidy.o ploidy.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o version.o version.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o hclust.o hclust.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o consensus.o consensus.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o smpl_ilist.o smpl_ilist.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o regidx.o regidx.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o vcfbuf.o vcfbuf.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o mpileup.o mpileup.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o bam2bcf.o bam2bcf.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o bam2bcf_iaux.o bam2bcf_iaux.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o bam2bcf_indel.o bam2bcf_indel.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o csq.o csq.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o read_consensus.o read_consensus.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o bam_sample.o bam_sample.c
bam_sample.c:172:15: warning: initializing 'char *' with an expression of type 'const char *' discards qualifiers [-Wincompatible-pointer-types-discards-qualifiers]
  172 |         char *eol = strchr(q + 3, '\n');
      |               ^     ~~~~~~~~~~~~~~~~~~~
1 warning generated.
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o cols.o cols.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o bam2bcf_edlib.o bam2bcf_edlib.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o dist.o dist.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o extsort.o extsort.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o vcfsort.o vcfsort.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o ccall.o ccall.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o em.o em.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o kmin.o kmin.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o str_finder.o str_finder.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o abuf.o abuf.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o edlib.o edlib.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o prob1.o prob1.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o mpileup2/mpileup.o mpileup2/mpileup.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o gff.o gff.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o polysomy.o polysomy.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o test/test-rbuf.o test/test-rbuf.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o peakfit.o peakfit.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.   -DPLUGINPATH='"/usr/local/libexec/bcftools:/usr/libexec/bcftools"' -c -o vcfplugin.o vcfplugin.c
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -c -o test/test-regidx.o test/test-regidx.c
clang -std=gnu23 -fPIC -shared -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o plugins/GTsubset.so version.c plugins/GTsubset.c  
clang -std=gnu23 -fPIC -shared -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o plugins/GTisec.so version.c plugins/GTisec.c  
clang -std=gnu23 -fPIC -shared -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o plugins/add-variantkey.so version.c plugins/add-variantkey.c 
clang -std=gnu23 -fPIC -shared -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o plugins/allele-length.so version.c plugins/allele-length.c 
clang -std=gnu23 -fPIC -shared -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o plugins/af-dist.so bin.c version.c plugins/af-dist.c  
clang -std=gnu23 -fPIC -shared -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o plugins/check-ploidy.so version.c plugins/check-ploidy.c 
clang -std=gnu23 -fPIC -shared -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o plugins/check-sparsity.so version.c plugins/check-sparsity.c 
clang -std=gnu23 -fPIC -shared -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o plugins/counts.so version.c plugins/counts.c 
clang -std=gnu23 -fPIC -shared -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o plugins/contrast.so version.c plugins/contrast.c 
clang -std=gnu23 -fPIC -shared -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o plugins/color-chrs.so HMM.c version.c plugins/color-chrs.c  
clang -std=gnu23 -fPIC -shared -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o plugins/fill-AN-AC.so version.c plugins/fill-AN-AC.c 
clang -std=gnu23 -fPIC -shared -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o plugins/dosage.so version.c plugins/dosage.c 
clang -std=gnu23 -fPIC -shared -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o plugins/ad-bias.so convert.c version.c plugins/ad-bias.c  
clang -std=gnu23 -fPIC -shared -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o plugins/fixref.so version.c plugins/fixref.c 
clang -std=gnu23 -fPIC -shared -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o plugins/frameshifts.so version.c plugins/frameshifts.c 
clang -std=gnu23 -fPIC -shared -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o plugins/fill-tags.so version.c plugins/fill-tags.c 
clang -std=gnu23 -fPIC -shared -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o plugins/fixploidy.so ploidy.c regidx.c version.c plugins/fixploidy.c  
clang -std=gnu23 -fPIC -shared -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o plugins/impute-info.so version.c plugins/impute-info.c 
clang -std=gnu23 -fPIC -shared -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o plugins/gvcfz.so version.c plugins/gvcfz.c 
clang -std=gnu23 -fPIC -shared -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o plugins/guess-ploidy.so version.c plugins/guess-ploidy.c 
clang -std=gnu23 -fPIC -shared -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o plugins/isecGT.so smpl_ilist.c version.c plugins/isecGT.c  
clang -std=gnu23 -fPIC -shared -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o plugins/indel-stats.so version.c plugins/indel-stats.c 
clang -std=gnu23 -fPIC -shared -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o plugins/mendelian2.so version.c plugins/mendelian2.c 
clang -std=gnu23 -fPIC -shared -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o plugins/missing2ref.so version.c plugins/missing2ref.c 
clang -std=gnu23 -fPIC -shared -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o plugins/parental-origin.so version.c plugins/parental-origin.c 
clang -std=gnu23 -fPIC -shared -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o plugins/remove-overlaps.so version.c plugins/remove-overlaps.c 
clang -std=gnu23 -fPIC -shared -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o plugins/prune.so version.c plugins/prune.c 
clang -std=gnu23 -fPIC -shared -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o plugins/scatter.so version.c plugins/scatter.c 
clang -std=gnu23 -fPIC -shared -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o plugins/smpl-stats.so version.c plugins/smpl-stats.c 
clang -std=gnu23 -fPIC -shared -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o plugins/setGT.so version.c plugins/setGT.c 
clang -std=gnu23 -fPIC -shared -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -D_REENTRANT -D_GNU_SOURCE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fwrapv -fno-strict-aliasing -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/lib64/perl5/CORE -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o plugins/fill-from-fasta.so filter.c version.c plugins/fill-from-fasta.c  
clang: warning: argument unused during compilation: '-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1' [-Wunused-command-line-argument]
warning: unknown warning option '-Wno-complain-wrong-lang'; did you mean '-Wno-c++11-long-long'? [-Wunknown-warning-option]
1 warning generated.
warning: unknown warning option '-Wno-complain-wrong-lang'; did you mean '-Wno-c++11-long-long'? [-Wunknown-warning-option]
1 warning generated.
warning: unknown warning option '-Wno-complain-wrong-lang'; did you mean '-Wno-c++11-long-long'? [-Wunknown-warning-option]
1 warning generated.
clang -std=gnu23 -fPIC -shared -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o plugins/tag2tag.so version.c plugins/tag2tag.c 
clang -std=gnu23 -fPIC -shared -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o plugins/split.so version.c plugins/split.c 
clang -std=gnu23 -fPIC -shared -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o plugins/split-vep.so version.c plugins/split-vep.c 
clang -std=gnu23 -fPIC -shared -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o plugins/trio-switch-rate.so version.c plugins/trio-switch-rate.c 
clang -std=gnu23 -fPIC -shared -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o plugins/trio-stats.so version.c plugins/trio-stats.c 
clang -std=gnu23 -fPIC -shared -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o plugins/variant-distance.so version.c plugins/variant-distance.c 
clang -std=gnu23 -fPIC -shared -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o plugins/variantkey-hex.so version.c plugins/variantkey-hex.c 
clang -std=gnu23 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.   -DUSE_GPL -c -o main.o main.c
clang -std=gnu23 -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o test/test-rbuf test/test-rbuf.o -lz  
clang -std=gnu23  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o test/test-regidx test/test-regidx.o regidx.o -lhts -lpthread -lz  
clang -std=gnu23 -fPIC -shared -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o plugins/vrfs.so version.c plugins/vrfs.c  
clang -std=gnu23 -fPIC -shared -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o plugins/trio-dnm3.so version.c plugins/trio-dnm3.c 
clang -std=gnu23 -fPIC -shared -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o plugins/vcf2table.so version.c plugins/vcf2table.c 
plugins/vcf2table.c:1066:13: warning: initializing 'char *' with an expression of type 'const char *' discards qualifiers [-Wincompatible-pointer-types-discards-qualifiers]
 1066 |       char* eq = strchr(info, '=');
      |             ^    ~~~~~~~~~~~~~~~~~
1 warning generated.
clang -std=gnu23 -rdynamic  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1    -o bcftools main.o vcfindex.o tabix.o vcfstats.o vcfisec.o vcfmerge.o vcfquery.o vcffilter.o filter.o vcfsom.o vcfnorm.o vcfgtcheck.o vcfview.o vcfannotate.o vcfroh.o vcfconcat.o vcfcall.o mcall.o vcmp.o gvcf.o reheader.o convert.o vcfconvert.o tsv2vcf.o vcfcnv.o vcfhead.o HMM.o consensus.o ploidy.o bin.o hclust.o version.o regidx.o smpl_ilist.o csq.o vcfbuf.o mpileup.o bam2bcf.o bam2bcf_indel.o bam2bcf_iaux.o bam2bcf_edlib.o read_consensus.o bam_sample.o vcfsort.o cols.o extsort.o dist.o abuf.o ccall.o em.o prob1.o kmin.o str_finder.o gff.o edlib.o mpileup2/mpileup.o polysomy.o peakfit.o vcfplugin.o -lhts -lm -lz   -lgsl -lgslcblas -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -fstack-protector-strong -L/usr/local/lib -L/usr/lib64/perl5/CORE -lperl -lpthread -lresolv -ldl -lm -lcrypt -lutil -lc -lpthread
clang: warning: argument unused during compilation: '-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1' [-Wunused-command-line-argument]
clang: warning: argument unused during compilation: '-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1' [-Wunused-command-line-argument]
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.mCDGRL
+ umask 022
+ cd /builddir/build/BUILD/bcftools-1.24-build
+ '[' /builddir/build/BUILD/bcftools-1.24-build/BUILDROOT '!=' / ']'
+ rm -rf /builddir/build/BUILD/bcftools-1.24-build/BUILDROOT
++ dirname /builddir/build/BUILD/bcftools-1.24-build/BUILDROOT
+ mkdir -p /builddir/build/BUILD/bcftools-1.24-build
+ mkdir /builddir/build/BUILD/bcftools-1.24-build/BUILDROOT
+ CFLAGS='-O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules  '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules  '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1   '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=clang
+ export CC
+ CXX=clang++
+ export CXX
+ cd bcftools-1.24
+ /usr/bin/make install DESTDIR=/builddir/build/BUILD/bcftools-1.24-build/BUILDROOT 'INSTALL=/usr/bin/install -p'
mkdir -p -m 755 /builddir/build/BUILD/bcftools-1.24-build/BUILDROOT/usr/bin /builddir/build/BUILD/bcftools-1.24-build/BUILDROOT/usr/share/man/man1 /builddir/build/BUILD/bcftools-1.24-build/BUILDROOT/usr/libexec/bcftools
/usr/bin/install -p bcftools /builddir/build/BUILD/bcftools-1.24-build/BUILDROOT/usr/bin
/usr/bin/install -p misc/color-chrs.pl misc/gff2gff misc/gff2gff.py misc/guess-ploidy.py misc/plot-vcfstats misc/plot-roh.py misc/roh-viz misc/run-roh.pl misc/vcfutils.pl misc/vrfs-variances /builddir/build/BUILD/bcftools-1.24-build/BUILDROOT/usr/bin
/usr/bin/install -p -m 644 doc/bcftools.1 /builddir/build/BUILD/bcftools-1.24-build/BUILDROOT/usr/share/man/man1
/usr/bin/install -p plugins/*.so /builddir/build/BUILD/bcftools-1.24-build/BUILDROOT/usr/libexec/bcftools
+ /usr/bin/find-debuginfo -j4 --strict-build-id -m -i --build-id-seed 1.24-2.fc46 --unique-debug-suffix -1.24-2.fc46.aarch64 --unique-debug-src-base bcftools-1.24-2.fc46.aarch64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 --remove-section .gnu.build.attributes -S debugsourcefiles.list /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24
find-debuginfo: starting
Extracting debug info from 42 files
DWARF-compressing 42 files
dwz: ./usr/bin/bcftools-1.24-2.fc46.aarch64.debug: Unknown debugging section .debug_addr
dwz: ./usr/libexec/bcftools/GTisec.so-1.24-2.fc46.aarch64.debug: Unknown debugging section .debug_addr
dwz: ./usr/libexec/bcftools/GTsubset.so-1.24-2.fc46.aarch64.debug: Unknown debugging section .debug_addr
dwz: ./usr/libexec/bcftools/ad-bias.so-1.24-2.fc46.aarch64.debug: Unknown debugging section .debug_addr
dwz: ./usr/libexec/bcftools/add-variantkey.so-1.24-2.fc46.aarch64.debug: Unknown debugging section .debug_addr
dwz: ./usr/libexec/bcftools/af-dist.so-1.24-2.fc46.aarch64.debug: Unknown debugging section .debug_addr
dwz: ./usr/libexec/bcftools/allele-length.so-1.24-2.fc46.aarch64.debug: Unknown debugging section .debug_addr
dwz: ./usr/libexec/bcftools/check-ploidy.so-1.24-2.fc46.aarch64.debug: Unknown debugging section .debug_addr
dwz: ./usr/libexec/bcftools/check-sparsity.so-1.24-2.fc46.aarch64.debug: Unknown debugging section .debug_addr
dwz: ./usr/libexec/bcftools/color-chrs.so-1.24-2.fc46.aarch64.debug: Unknown debugging section .debug_addr
dwz: ./usr/libexec/bcftools/contrast.so-1.24-2.fc46.aarch64.debug: Unknown debugging section .debug_addr
dwz: ./usr/libexec/bcftools/counts.so-1.24-2.fc46.aarch64.debug: Unknown debugging section .debug_addr
dwz: ./usr/libexec/bcftools/dosage.so-1.24-2.fc46.aarch64.debug: Unknown debugging section .debug_addr
dwz: ./usr/libexec/bcftools/fill-AN-AC.so-1.24-2.fc46.aarch64.debug: Unknown debugging section .debug_addr
dwz: ./usr/libexec/bcftools/fill-from-fasta.so-1.24-2.fc46.aarch64.debug: Unknown debugging section .debug_addr
dwz: ./usr/libexec/bcftools/fill-tags.so-1.24-2.fc46.aarch64.debug: Unknown debugging section .debug_addr
dwz: ./usr/libexec/bcftools/fixploidy.so-1.24-2.fc46.aarch64.debug: Unknown debugging section .debug_addr
dwz: ./usr/libexec/bcftools/fixref.so-1.24-2.fc46.aarch64.debug: Unknown debugging section .debug_addr
dwz: ./usr/libexec/bcftools/frameshifts.so-1.24-2.fc46.aarch64.debug: Unknown debugging section .debug_addr
dwz: ./usr/libexec/bcftools/guess-ploidy.so-1.24-2.fc46.aarch64.debug: Unknown debugging section .debug_addr
dwz: ./usr/libexec/bcftools/gvcfz.so-1.24-2.fc46.aarch64.debug: Unknown debugging section .debug_addr
dwz: ./usr/libexec/bcftools/impute-info.so-1.24-2.fc46.aarch64.debug: Unknown debugging section .debug_addr
dwz: ./usr/libexec/bcftools/indel-stats.so-1.24-2.fc46.aarch64.debug: Unknown debugging section .debug_addr
dwz: ./usr/libexec/bcftools/isecGT.so-1.24-2.fc46.aarch64.debug: Unknown debugging section .debug_addr
dwz: ./usr/libexec/bcftools/mendelian2.so-1.24-2.fc46.aarch64.debug: Unknown debugging section .debug_addr
dwz: ./usr/libexec/bcftools/missing2ref.so-1.24-2.fc46.aarch64.debug: Unknown debugging section .debug_addr
dwz: ./usr/libexec/bcftools/parental-origin.so-1.24-2.fc46.aarch64.debug: Unknown debugging section .debug_addr
dwz: ./usr/libexec/bcftools/prune.so-1.24-2.fc46.aarch64.debug: Unknown debugging section .debug_addr
dwz: ./usr/libexec/bcftools/remove-overlaps.so-1.24-2.fc46.aarch64.debug: Unknown debugging section .debug_addr
dwz: ./usr/libexec/bcftools/scatter.so-1.24-2.fc46.aarch64.debug: Unknown debugging section .debug_addr
dwz: ./usr/libexec/bcftools/setGT.so-1.24-2.fc46.aarch64.debug: Unknown debugging section .debug_addr
dwz: ./usr/libexec/bcftools/smpl-stats.so-1.24-2.fc46.aarch64.debug: Unknown debugging section .debug_addr
dwz: ./usr/libexec/bcftools/split-vep.so-1.24-2.fc46.aarch64.debug: Unknown debugging section .debug_addr
dwz: ./usr/libexec/bcftools/split.so-1.24-2.fc46.aarch64.debug: Unknown debugging section .debug_addr
dwz: ./usr/libexec/bcftools/tag2tag.so-1.24-2.fc46.aarch64.debug: Unknown debugging section .debug_addr
dwz: ./usr/libexec/bcftools/trio-dnm3.so-1.24-2.fc46.aarch64.debug: Unknown debugging section .debug_addr
dwz: ./usr/libexec/bcftools/trio-stats.so-1.24-2.fc46.aarch64.debug: Unknown debugging section .debug_addr
dwz: ./usr/libexec/bcftools/trio-switch-rate.so-1.24-2.fc46.aarch64.debug: Unknown debugging section .debug_addr
dwz: ./usr/libexec/bcftools/variant-distance.so-1.24-2.fc46.aarch64.debug: Unknown debugging section .debug_addr
dwz: ./usr/libexec/bcftools/variantkey-hex.so-1.24-2.fc46.aarch64.debug: Unknown debugging section .debug_addr
dwz: ./usr/libexec/bcftools/vcf2table.so-1.24-2.fc46.aarch64.debug: Unknown debugging section .debug_addr
dwz: ./usr/libexec/bcftools/vrfs.so-1.24-2.fc46.aarch64.debug: Unknown debugging section .debug_addr
dwz: Too few files for multifile optimization
sepdebugcrcfix: Updated 0 CRC32s, 42 CRC32s did match.
Creating .debug symlinks for symlinks to ELF files
Copying sources found by 'debugedit -l' to /usr/src/debug/bcftools-1.24-2.fc46.aarch64
find-debuginfo: done
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
+ COMPRESS='gzip -9 -n'
+ COMPRESS_EXT=.gz
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip
+ /usr/lib/rpm/check-rpaths
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
mangling shebang in /usr/bin/vrfs-variances from /usr/bin/env perl to #!/usr/bin/perl
mangling shebang in /usr/bin/roh-viz from /usr/bin/env perl to #!/usr/bin/perl
mangling shebang in /usr/bin/gff2gff from /usr/bin/env perl to #!/usr/bin/perl
+ /usr/lib/rpm/brp-remove-la-files
+ /usr/lib/rpm/redhat/brp-python-rpm-in-distinfo
+ env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j4
+ /usr/lib/rpm/redhat/brp-python-hardlink
+ /usr/bin/add-det --brp -j4 /builddir/build/BUILD/bcftools-1.24-build/BUILDROOT
Scanned 19 directories and 230 files,
    processed 1 inodes,
    0 modified (0 replaced + 0 rewritten),
    0 unsupported format, 0 errors
+ /usr/bin/linkdupes --brp /builddir/build/BUILD/bcftools-1.24-build/BUILDROOT/usr
Scanned 18 directories and 230 files,
    considered 230 files, read 6 files, linked 0 files, 0 errors
    sum of sizes of linked files: 0 bytes
Reading /builddir/build/BUILD/bcftools-1.24-build/SPECPARTS/rpm-debuginfo.specpart
Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.5fc21Q
+ umask 022
+ cd /builddir/build/BUILD/bcftools-1.24-build
+ CFLAGS='-O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules  '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong   -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules  '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg  -flto=thin -ffat-lto-objects -Wl,--build-id=sha1   '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=clang
+ export CC
+ CXX=clang++
+ export CXX
+ cd bcftools-1.24
+ ldd bcftools
+ grep -E '/lib(64)?(/lp64d)?/libhts\.so\.'
	libhts.so.3 => /lib64/libhts.so.3 (0x0000ffff95d50000)
+ make test
./test/test-rbuf
Inserted 1-9 starting at offset 5:
  5  6  7  8  9  0  1  2  3
  1  2  3  4  5  6  7  8  9
4th is 4
Deleting 1-2:
  7  8  9  0  1  2  3
  3  4  5  6  7  8  9
Prepending 0-8:
  8  9  0  1  2  3  4  5  6  7
  8  7  6  5  4  3  2  1  0  3
Expanding:
  8  9 10 11 12 13 14 15 16 17
  8  7  6  5  4  3  2  1  0  3
./test/test-regidx
REF_PATH=: ./test/test.pl --plugins --exec bgzip= --exec tabix= --htsdir= ${TEST_OPTS:-}
./test/test.pl: module IO::Pty not found; skipping usage tests
test_usage:
	bcftools
test_tabix:
	tabix /tmp/d5I7jei21M/merge.a.vcf.gz 2:3199812-3199812
.. ok

test_tabix:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -H /tmp/d5I7jei21M/merge.a.bcf 2:3199812-3199812
.. ok

test_tabix:
	tabix /tmp/d5I7jei21M/merge.a.vcf.gz 1:3000151-3000151
.. ok

test_tabix:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -H /tmp/d5I7jei21M/merge.a.bcf 1:3000151-3000151
.. ok

test_index:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -H /tmp/d5I7jei21M/large_chrom_csi_limit.vcf.gz chr20:1-2147483647
.. ok

test_index:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -H /tmp/d5I7jei21M/large_chrom_csi_limit.bcf chr20:1-2147483647
.. ok

test_index:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -H /tmp/d5I7jei21M/large_chrom_csi_limit.bcf chr20:1-2147483647
.. ok

test_index:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -H /tmp/d5I7jei21M/large_chrom_csi_limit.vcf.gz chr20:1-2147483647
.. ok

test_index:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -H /tmp/d5I7jei21M/large_chrom_csi_limit.bcf chr20:1-2147483647
.. ok

test_index:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -H /tmp/d5I7jei21M/large_chrom_csi_limit.vcf.gz chr20
.. ok

test_index:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -H /tmp/d5I7jei21M/large_chrom_csi_limit.bcf chr20
.. ok

test_index:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -H /tmp/d5I7jei21M/large_chrom_csi_limit.bcf chr20
.. ok

test_index:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -H /tmp/d5I7jei21M/large_chrom_csi_limit.vcf.gz chr20
.. ok

test_index:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -H /tmp/d5I7jei21M/large_chrom_csi_limit.bcf chr20
.. ok

test_vcf_idxstats:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools index -s /tmp/d5I7jei21M/idx.vcf.gz
.. ok

test_vcf_idxstats:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools index -s /tmp/d5I7jei21M/idx.vcf.gz
.. ok

test_vcf_idxstats:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools index -s /tmp/d5I7jei21M/idx.bcf
.. ok

test_vcf_idxstats:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools index -n /tmp/d5I7jei21M/idx.vcf.gz
.. ok

test_vcf_idxstats:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools index -n /tmp/d5I7jei21M/idx.vcf.gz
.. ok

test_vcf_idxstats:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools index -n /tmp/d5I7jei21M/idx.vcf.gz.csi
.. ok

test_vcf_idxstats:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools index -n /tmp/d5I7jei21M/idx.bcf
.. ok

test_vcf_idxstats:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools index -n /tmp/d5I7jei21M/idx.bcf.csi
.. ok

test_vcf_idxstats:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools index -s /tmp/d5I7jei21M/empty.vcf.gz
.. ok

test_vcf_idxstats:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools index -s /tmp/d5I7jei21M/empty.vcf.gz
.. ok

test_vcf_idxstats:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools index -s /tmp/d5I7jei21M/empty.bcf
.. ok

test_vcf_idxstats:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools index -n /tmp/d5I7jei21M/empty.vcf.gz
.. ok

test_vcf_idxstats:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools index -n /tmp/d5I7jei21M/empty.vcf.gz
.. ok

test_vcf_idxstats:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools index -n /tmp/d5I7jei21M/empty.vcf.gz.csi
.. ok

test_vcf_idxstats:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools index -n /tmp/d5I7jei21M/empty.bcf
.. ok

test_vcf_idxstats:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools index -n /tmp/d5I7jei21M/empty.bcf.csi
.. ok

test_vcf_check:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools stats -s - /tmp/d5I7jei21M/check.vcf.gz | grep -v '^# The command' | grep -v '^# This' | grep -v '^ID	'
.. ok

test_vcf_check:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/check.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools stats -s - | grep -v '^# The command' | grep -v '^# This' | grep -v '^ID	'
.. ok

test_vcf_check_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/misc/plot-vcfstats -m /tmp/d5I7jei21M/check.1.chk /tmp/d5I7jei21M/check.2.chk /tmp/d5I7jei21M/check.3.chk /tmp/d5I7jei21M/check.4.chk | grep -v 'plot-vcfstats' | grep -v '^# The command' | grep -v '^# This' | grep -v '^ID	'
.. ok

test_vcf_stats:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools stats -s A,B  /tmp/d5I7jei21M/stats-smpl-order.vcf.gz | grep -v '^#' | grep -v '^ID	'  | LC_ALL=C sort
.. ok

test_vcf_stats:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools stats -s B,A  /tmp/d5I7jei21M/stats-smpl-order.vcf.gz | grep -v '^#' | grep -v '^ID	'  | LC_ALL=C sort
.. ok

test_vcf_stats:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools stats -s -  /tmp/d5I7jei21M/stats.a.vcf.gz /tmp/d5I7jei21M/stats.b.vcf.gz | grep -v '^#' | grep -v '^ID	' 
.. ok

test_vcf_stats:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools stats -s B  /tmp/d5I7jei21M/stats.a.vcf.gz /tmp/d5I7jei21M/stats.b.vcf.gz | grep -v '^#' | grep -v '^ID	' 
.. ok

test_vcf_stats:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools stats -s -  /tmp/d5I7jei21M/stats.counts.vcf.gz | grep -v '^#' | grep -v '^ID	' 
.. ok

test_vcf_stats:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools stats -s - -i 'type="snp"'  /tmp/d5I7jei21M/stats.counts.vcf.gz | grep -v '^#' | grep -v '^ID	' 
.. ok

test_vcf_stats:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools stats -s -  /tmp/d5I7jei21M/stats.vaf.vcf.gz | grep -v '^#' | grep -v '^ID	' 
.. ok

test_vcf_isec:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools isec -n =2 -w 2 --no-version /tmp/d5I7jei21M/isec.match-id.1.1.vcf.gz /tmp/d5I7jei21M/isec.match-id.1.2.vcf.gz
.. ok

test_vcf_isec:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools isec -n =2 -w 2 -c id --no-version /tmp/d5I7jei21M/isec.match-id.1.1.vcf.gz /tmp/d5I7jei21M/isec.match-id.1.2.vcf.gz
.. ok

test_vcf_isec:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools isec -n =2 /tmp/d5I7jei21M/isec.a.vcf.gz /tmp/d5I7jei21M/isec.b.vcf.gz
.. ok

test_vcf_isec:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools isec -n =2 -i"STRLEN(REF)==2" /tmp/d5I7jei21M/isec.a.vcf.gz /tmp/d5I7jei21M/isec.b.vcf.gz
.. ok

test_vcf_isec:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools isec -n =2 -c both /tmp/d5I7jei21M/isec.a.vcf.gz /tmp/d5I7jei21M/isec.b.vcf.gz
.. ok

test_vcf_isec:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools isec -n =2 -c any /tmp/d5I7jei21M/isec.a.vcf.gz /tmp/d5I7jei21M/isec.b.vcf.gz
.. ok

test_vcf_isec:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools isec -C -c any /tmp/d5I7jei21M/isec.a.vcf.gz /tmp/d5I7jei21M/isec.b.vcf.gz
.. ok

test_vcf_isec2:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools isec --no-version   -T /tmp/d5I7jei21M/isec.tab.gz /tmp/d5I7jei21M/isec.a.vcf.gz
.. ok

test_vcf_isec2:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools isec -Ob  -T /tmp/d5I7jei21M/isec.tab.gz /tmp/d5I7jei21M/isec.a.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_isec:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools isec -n +1 -r 20:100,20:140,12:55,20:140,20:100 /tmp/d5I7jei21M/isec-miss.1.1.vcf.gz /tmp/d5I7jei21M/isec-miss.1.2.vcf.gz /tmp/d5I7jei21M/isec-miss.1.3.vcf.gz
.. ok

test_vcf_isec:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools isec -R /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/isec-miss.1.regs.txt -n +1 /tmp/d5I7jei21M/isec-miss.1.1.vcf.gz /tmp/d5I7jei21M/isec-miss.1.2.vcf.gz /tmp/d5I7jei21M/isec-miss.1.3.vcf.gz
.. ok

test_vcf_isec:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools isec -n +1 -r 20:100,20:140,12:55,20:140,20:100 /tmp/d5I7jei21M/isec-miss.2.1.vcf.gz /tmp/d5I7jei21M/isec-miss.2.2.vcf.gz /tmp/d5I7jei21M/isec-miss.2.3.vcf.gz
.. ok

test_vcf_isec:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools isec -R /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/isec-miss.1.regs.txt -n +1 /tmp/d5I7jei21M/isec-miss.2.1.vcf.gz /tmp/d5I7jei21M/isec-miss.2.2.vcf.gz /tmp/d5I7jei21M/isec-miss.2.3.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version  /tmp/d5I7jei21M/merge.exact.a.vcf.gz /tmp/d5I7jei21M/merge.exact.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob  /tmp/d5I7jei21M/merge.exact.a.vcf.gz /tmp/d5I7jei21M/merge.exact.b.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version  /tmp/d5I7jei21M/merge.exact.a.bcf /tmp/d5I7jei21M/merge.exact.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob  /tmp/d5I7jei21M/merge.exact.a.bcf /tmp/d5I7jei21M/merge.exact.b.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -m exact /tmp/d5I7jei21M/merge.exact.a.vcf.gz /tmp/d5I7jei21M/merge.exact.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob -m exact /tmp/d5I7jei21M/merge.exact.a.vcf.gz /tmp/d5I7jei21M/merge.exact.b.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -m exact /tmp/d5I7jei21M/merge.exact.a.bcf /tmp/d5I7jei21M/merge.exact.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob -m exact /tmp/d5I7jei21M/merge.exact.a.bcf /tmp/d5I7jei21M/merge.exact.b.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version  /tmp/d5I7jei21M/merge.broken-gvcf.a.vcf.gz /tmp/d5I7jei21M/merge.broken-gvcf.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob  /tmp/d5I7jei21M/merge.broken-gvcf.a.vcf.gz /tmp/d5I7jei21M/merge.broken-gvcf.b.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version  /tmp/d5I7jei21M/merge.broken-gvcf.a.bcf /tmp/d5I7jei21M/merge.broken-gvcf.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob  /tmp/d5I7jei21M/merge.broken-gvcf.a.bcf /tmp/d5I7jei21M/merge.broken-gvcf.b.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version  /tmp/d5I7jei21M/merge.symbolic.1.a.vcf.gz /tmp/d5I7jei21M/merge.symbolic.1.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob  /tmp/d5I7jei21M/merge.symbolic.1.a.vcf.gz /tmp/d5I7jei21M/merge.symbolic.1.b.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version  /tmp/d5I7jei21M/merge.symbolic.1.a.bcf /tmp/d5I7jei21M/merge.symbolic.1.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob  /tmp/d5I7jei21M/merge.symbolic.1.a.bcf /tmp/d5I7jei21M/merge.symbolic.1.b.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --merge none /tmp/d5I7jei21M/merge.multiallelics.1.a.vcf.gz /tmp/d5I7jei21M/merge.multiallelics.1.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --merge none /tmp/d5I7jei21M/merge.multiallelics.1.a.vcf.gz /tmp/d5I7jei21M/merge.multiallelics.1.b.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --merge none /tmp/d5I7jei21M/merge.multiallelics.1.a.bcf /tmp/d5I7jei21M/merge.multiallelics.1.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --merge none /tmp/d5I7jei21M/merge.multiallelics.1.a.bcf /tmp/d5I7jei21M/merge.multiallelics.1.b.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --merge both /tmp/d5I7jei21M/merge.multiallelics.1.a.vcf.gz /tmp/d5I7jei21M/merge.multiallelics.1.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --merge both /tmp/d5I7jei21M/merge.multiallelics.1.a.vcf.gz /tmp/d5I7jei21M/merge.multiallelics.1.b.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --merge both /tmp/d5I7jei21M/merge.multiallelics.1.a.bcf /tmp/d5I7jei21M/merge.multiallelics.1.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --merge both /tmp/d5I7jei21M/merge.multiallelics.1.a.bcf /tmp/d5I7jei21M/merge.multiallelics.1.b.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --merge none /tmp/d5I7jei21M/merge.12.a.vcf.gz /tmp/d5I7jei21M/merge.12.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --merge none /tmp/d5I7jei21M/merge.12.a.vcf.gz /tmp/d5I7jei21M/merge.12.b.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --merge none /tmp/d5I7jei21M/merge.12.a.bcf /tmp/d5I7jei21M/merge.12.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --merge none /tmp/d5I7jei21M/merge.12.a.bcf /tmp/d5I7jei21M/merge.12.b.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --merge both /tmp/d5I7jei21M/merge.12.a.vcf.gz /tmp/d5I7jei21M/merge.12.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --merge both /tmp/d5I7jei21M/merge.12.a.vcf.gz /tmp/d5I7jei21M/merge.12.b.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --merge both /tmp/d5I7jei21M/merge.12.a.bcf /tmp/d5I7jei21M/merge.12.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --merge both /tmp/d5I7jei21M/merge.12.a.bcf /tmp/d5I7jei21M/merge.12.b.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version  /tmp/d5I7jei21M/merge.phased.1.a.vcf.gz /tmp/d5I7jei21M/merge.phased.1.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob  /tmp/d5I7jei21M/merge.phased.1.a.vcf.gz /tmp/d5I7jei21M/merge.phased.1.b.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version  /tmp/d5I7jei21M/merge.phased.1.a.bcf /tmp/d5I7jei21M/merge.phased.1.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob  /tmp/d5I7jei21M/merge.phased.1.a.bcf /tmp/d5I7jei21M/merge.phased.1.b.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version  /tmp/d5I7jei21M/merge.11.a.vcf.gz /tmp/d5I7jei21M/merge.11.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob  /tmp/d5I7jei21M/merge.11.a.vcf.gz /tmp/d5I7jei21M/merge.11.b.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version  /tmp/d5I7jei21M/merge.11.a.bcf /tmp/d5I7jei21M/merge.11.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob  /tmp/d5I7jei21M/merge.11.a.bcf /tmp/d5I7jei21M/merge.11.b.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -i AF:join /tmp/d5I7jei21M/merge.join.a.vcf.gz /tmp/d5I7jei21M/merge.join.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob -i AF:join /tmp/d5I7jei21M/merge.join.a.vcf.gz /tmp/d5I7jei21M/merge.join.b.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -i AF:join /tmp/d5I7jei21M/merge.join.a.bcf /tmp/d5I7jei21M/merge.join.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob -i AF:join /tmp/d5I7jei21M/merge.join.a.bcf /tmp/d5I7jei21M/merge.join.b.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --force-single /tmp/d5I7jei21M/merge.LPL.a.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --force-single /tmp/d5I7jei21M/merge.LPL.a.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --force-single /tmp/d5I7jei21M/merge.LPL.a.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --force-single /tmp/d5I7jei21M/merge.LPL.a.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --force-samples /tmp/d5I7jei21M/merge.LPL.a.vcf.gz /tmp/d5I7jei21M/merge.LPL.b.vcf.gz /tmp/d5I7jei21M/merge.LPL.c.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --force-samples /tmp/d5I7jei21M/merge.LPL.a.vcf.gz /tmp/d5I7jei21M/merge.LPL.b.vcf.gz /tmp/d5I7jei21M/merge.LPL.c.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --force-samples /tmp/d5I7jei21M/merge.LPL.a.bcf /tmp/d5I7jei21M/merge.LPL.b.bcf /tmp/d5I7jei21M/merge.LPL.c.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --force-samples /tmp/d5I7jei21M/merge.LPL.a.bcf /tmp/d5I7jei21M/merge.LPL.b.bcf /tmp/d5I7jei21M/merge.LPL.c.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --force-samples -L 1 /tmp/d5I7jei21M/merge.LPL.a.vcf.gz /tmp/d5I7jei21M/merge.LPL.b.vcf.gz /tmp/d5I7jei21M/merge.LPL.c.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --force-samples -L 1 /tmp/d5I7jei21M/merge.LPL.a.vcf.gz /tmp/d5I7jei21M/merge.LPL.b.vcf.gz /tmp/d5I7jei21M/merge.LPL.c.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --force-samples -L 1 /tmp/d5I7jei21M/merge.LPL.a.bcf /tmp/d5I7jei21M/merge.LPL.b.bcf /tmp/d5I7jei21M/merge.LPL.c.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --force-samples -L 1 /tmp/d5I7jei21M/merge.LPL.a.bcf /tmp/d5I7jei21M/merge.LPL.b.bcf /tmp/d5I7jei21M/merge.LPL.c.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --force-samples -L 2 /tmp/d5I7jei21M/merge.LPL.a.vcf.gz /tmp/d5I7jei21M/merge.LPL.b.vcf.gz /tmp/d5I7jei21M/merge.LPL.c.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --force-samples -L 2 /tmp/d5I7jei21M/merge.LPL.a.vcf.gz /tmp/d5I7jei21M/merge.LPL.b.vcf.gz /tmp/d5I7jei21M/merge.LPL.c.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --force-samples -L 2 /tmp/d5I7jei21M/merge.LPL.a.bcf /tmp/d5I7jei21M/merge.LPL.b.bcf /tmp/d5I7jei21M/merge.LPL.c.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --force-samples -L 2 /tmp/d5I7jei21M/merge.LPL.a.bcf /tmp/d5I7jei21M/merge.LPL.b.bcf /tmp/d5I7jei21M/merge.LPL.c.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --force-samples -L 3 /tmp/d5I7jei21M/merge.LPL.a.vcf.gz /tmp/d5I7jei21M/merge.LPL.b.vcf.gz /tmp/d5I7jei21M/merge.LPL.c.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --force-samples -L 3 /tmp/d5I7jei21M/merge.LPL.a.vcf.gz /tmp/d5I7jei21M/merge.LPL.b.vcf.gz /tmp/d5I7jei21M/merge.LPL.c.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --force-samples -L 3 /tmp/d5I7jei21M/merge.LPL.a.bcf /tmp/d5I7jei21M/merge.LPL.b.bcf /tmp/d5I7jei21M/merge.LPL.c.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --force-samples -L 3 /tmp/d5I7jei21M/merge.LPL.a.bcf /tmp/d5I7jei21M/merge.LPL.b.bcf /tmp/d5I7jei21M/merge.LPL.c.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --force-samples -L 4 /tmp/d5I7jei21M/merge.LPL.a.vcf.gz /tmp/d5I7jei21M/merge.LPL.b.vcf.gz /tmp/d5I7jei21M/merge.LPL.c.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --force-samples -L 4 /tmp/d5I7jei21M/merge.LPL.a.vcf.gz /tmp/d5I7jei21M/merge.LPL.b.vcf.gz /tmp/d5I7jei21M/merge.LPL.c.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --force-samples -L 4 /tmp/d5I7jei21M/merge.LPL.a.bcf /tmp/d5I7jei21M/merge.LPL.b.bcf /tmp/d5I7jei21M/merge.LPL.c.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --force-samples -L 4 /tmp/d5I7jei21M/merge.LPL.a.bcf /tmp/d5I7jei21M/merge.LPL.b.bcf /tmp/d5I7jei21M/merge.LPL.c.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --force-samples -L 5 /tmp/d5I7jei21M/merge.LPL.a.vcf.gz /tmp/d5I7jei21M/merge.LPL.b.vcf.gz /tmp/d5I7jei21M/merge.LPL.c.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --force-samples -L 5 /tmp/d5I7jei21M/merge.LPL.a.vcf.gz /tmp/d5I7jei21M/merge.LPL.b.vcf.gz /tmp/d5I7jei21M/merge.LPL.c.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --force-samples -L 5 /tmp/d5I7jei21M/merge.LPL.a.bcf /tmp/d5I7jei21M/merge.LPL.b.bcf /tmp/d5I7jei21M/merge.LPL.c.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --force-samples -L 5 /tmp/d5I7jei21M/merge.LPL.a.bcf /tmp/d5I7jei21M/merge.LPL.b.bcf /tmp/d5I7jei21M/merge.LPL.c.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --force-samples /tmp/d5I7jei21M/merge.a.vcf.gz /tmp/d5I7jei21M/merge.b.vcf.gz /tmp/d5I7jei21M/merge.c.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --force-samples /tmp/d5I7jei21M/merge.a.vcf.gz /tmp/d5I7jei21M/merge.b.vcf.gz /tmp/d5I7jei21M/merge.c.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --force-samples /tmp/d5I7jei21M/merge.a.bcf /tmp/d5I7jei21M/merge.b.bcf /tmp/d5I7jei21M/merge.c.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --force-samples /tmp/d5I7jei21M/merge.a.bcf /tmp/d5I7jei21M/merge.b.bcf /tmp/d5I7jei21M/merge.c.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --force-samples -Fx /tmp/d5I7jei21M/merge.a.vcf.gz /tmp/d5I7jei21M/merge.b.vcf.gz /tmp/d5I7jei21M/merge.c.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --force-samples -Fx /tmp/d5I7jei21M/merge.a.vcf.gz /tmp/d5I7jei21M/merge.b.vcf.gz /tmp/d5I7jei21M/merge.c.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --force-samples -Fx /tmp/d5I7jei21M/merge.a.bcf /tmp/d5I7jei21M/merge.b.bcf /tmp/d5I7jei21M/merge.c.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --force-samples -Fx /tmp/d5I7jei21M/merge.a.bcf /tmp/d5I7jei21M/merge.b.bcf /tmp/d5I7jei21M/merge.c.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --force-samples -0 /tmp/d5I7jei21M/merge.a.vcf.gz /tmp/d5I7jei21M/merge.b.vcf.gz /tmp/d5I7jei21M/merge.c.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --force-samples -0 /tmp/d5I7jei21M/merge.a.vcf.gz /tmp/d5I7jei21M/merge.b.vcf.gz /tmp/d5I7jei21M/merge.c.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --force-samples -0 /tmp/d5I7jei21M/merge.a.bcf /tmp/d5I7jei21M/merge.b.bcf /tmp/d5I7jei21M/merge.c.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --force-samples -0 /tmp/d5I7jei21M/merge.a.bcf /tmp/d5I7jei21M/merge.b.bcf /tmp/d5I7jei21M/merge.c.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --force-samples -m none /tmp/d5I7jei21M/merge.2.a.vcf.gz /tmp/d5I7jei21M/merge.2.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --force-samples -m none /tmp/d5I7jei21M/merge.2.a.vcf.gz /tmp/d5I7jei21M/merge.2.b.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --force-samples -m none /tmp/d5I7jei21M/merge.2.a.bcf /tmp/d5I7jei21M/merge.2.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --force-samples -m none /tmp/d5I7jei21M/merge.2.a.bcf /tmp/d5I7jei21M/merge.2.b.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --force-samples -m both /tmp/d5I7jei21M/merge.2.a.vcf.gz /tmp/d5I7jei21M/merge.2.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --force-samples -m both /tmp/d5I7jei21M/merge.2.a.vcf.gz /tmp/d5I7jei21M/merge.2.b.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --force-samples -m both /tmp/d5I7jei21M/merge.2.a.bcf /tmp/d5I7jei21M/merge.2.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --force-samples -m both /tmp/d5I7jei21M/merge.2.a.bcf /tmp/d5I7jei21M/merge.2.b.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --force-samples -m all /tmp/d5I7jei21M/merge.2.a.vcf.gz /tmp/d5I7jei21M/merge.2.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --force-samples -m all /tmp/d5I7jei21M/merge.2.a.vcf.gz /tmp/d5I7jei21M/merge.2.b.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --force-samples -m all /tmp/d5I7jei21M/merge.2.a.bcf /tmp/d5I7jei21M/merge.2.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --force-samples -m all /tmp/d5I7jei21M/merge.2.a.bcf /tmp/d5I7jei21M/merge.2.b.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --force-samples -i TR:sum,TA:sum,TG:sum /tmp/d5I7jei21M/merge.3.a.vcf.gz /tmp/d5I7jei21M/merge.3.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --force-samples -i TR:sum,TA:sum,TG:sum /tmp/d5I7jei21M/merge.3.a.vcf.gz /tmp/d5I7jei21M/merge.3.b.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --force-samples -i TR:sum,TA:sum,TG:sum /tmp/d5I7jei21M/merge.3.a.bcf /tmp/d5I7jei21M/merge.3.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --force-samples -i TR:sum,TA:sum,TG:sum /tmp/d5I7jei21M/merge.3.a.bcf /tmp/d5I7jei21M/merge.3.b.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --force-samples -m id /tmp/d5I7jei21M/merge.4.a.vcf.gz /tmp/d5I7jei21M/merge.4.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --force-samples -m id /tmp/d5I7jei21M/merge.4.a.vcf.gz /tmp/d5I7jei21M/merge.4.b.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --force-samples -m id /tmp/d5I7jei21M/merge.4.a.bcf /tmp/d5I7jei21M/merge.4.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --force-samples -m id /tmp/d5I7jei21M/merge.4.a.bcf /tmp/d5I7jei21M/merge.4.b.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --gvcf - /tmp/d5I7jei21M/gvcf.merge.1.vcf.gz /tmp/d5I7jei21M/gvcf.merge.2.vcf.gz /tmp/d5I7jei21M/gvcf.merge.3.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --gvcf - /tmp/d5I7jei21M/gvcf.merge.1.vcf.gz /tmp/d5I7jei21M/gvcf.merge.2.vcf.gz /tmp/d5I7jei21M/gvcf.merge.3.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --gvcf - /tmp/d5I7jei21M/gvcf.merge.1.bcf /tmp/d5I7jei21M/gvcf.merge.2.bcf /tmp/d5I7jei21M/gvcf.merge.3.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --gvcf - /tmp/d5I7jei21M/gvcf.merge.1.bcf /tmp/d5I7jei21M/gvcf.merge.2.bcf /tmp/d5I7jei21M/gvcf.merge.3.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --gvcf - /tmp/d5I7jei21M/merge.gvcf.2.a.vcf.gz /tmp/d5I7jei21M/merge.gvcf.2.b.vcf.gz /tmp/d5I7jei21M/merge.gvcf.2.c.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --gvcf - /tmp/d5I7jei21M/merge.gvcf.2.a.vcf.gz /tmp/d5I7jei21M/merge.gvcf.2.b.vcf.gz /tmp/d5I7jei21M/merge.gvcf.2.c.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --gvcf - -m both,* /tmp/d5I7jei21M/merge.gvcf.2.a.vcf.gz /tmp/d5I7jei21M/merge.gvcf.2.b.vcf.gz /tmp/d5I7jei21M/merge.gvcf.2.c.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --gvcf - -m both,* /tmp/d5I7jei21M/merge.gvcf.2.a.vcf.gz /tmp/d5I7jei21M/merge.gvcf.2.b.vcf.gz /tmp/d5I7jei21M/merge.gvcf.2.c.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --gvcf - -m both,** /tmp/d5I7jei21M/merge.gvcf.2.a.vcf.gz /tmp/d5I7jei21M/merge.gvcf.2.b.vcf.gz /tmp/d5I7jei21M/merge.gvcf.2.c.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --gvcf - -m both,** /tmp/d5I7jei21M/merge.gvcf.2.a.vcf.gz /tmp/d5I7jei21M/merge.gvcf.2.b.vcf.gz /tmp/d5I7jei21M/merge.gvcf.2.c.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --gvcf - -i SRC:join /tmp/d5I7jei21M/merge.gvcf.3.a.vcf.gz /tmp/d5I7jei21M/merge.gvcf.3.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --gvcf - -i SRC:join /tmp/d5I7jei21M/merge.gvcf.3.a.vcf.gz /tmp/d5I7jei21M/merge.gvcf.3.b.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --gvcf - /tmp/d5I7jei21M/merge.gvcf.4.a.vcf.gz /tmp/d5I7jei21M/merge.gvcf.4.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --gvcf - /tmp/d5I7jei21M/merge.gvcf.4.a.vcf.gz /tmp/d5I7jei21M/merge.gvcf.4.b.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --gvcf - /tmp/d5I7jei21M/merge.gvcf.4.a.bcf /tmp/d5I7jei21M/merge.gvcf.4.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --gvcf - /tmp/d5I7jei21M/merge.gvcf.4.a.bcf /tmp/d5I7jei21M/merge.gvcf.4.b.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version  /tmp/d5I7jei21M/merge.5.a.vcf.gz /tmp/d5I7jei21M/merge.5.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob  /tmp/d5I7jei21M/merge.5.a.vcf.gz /tmp/d5I7jei21M/merge.5.b.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version  /tmp/d5I7jei21M/merge.5.a.bcf /tmp/d5I7jei21M/merge.5.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob  /tmp/d5I7jei21M/merge.5.a.bcf /tmp/d5I7jei21M/merge.5.b.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version  /tmp/d5I7jei21M/merge.6.a.vcf.gz /tmp/d5I7jei21M/merge.6.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob  /tmp/d5I7jei21M/merge.6.a.vcf.gz /tmp/d5I7jei21M/merge.6.b.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version  /tmp/d5I7jei21M/merge.6.a.bcf /tmp/d5I7jei21M/merge.6.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob  /tmp/d5I7jei21M/merge.6.a.bcf /tmp/d5I7jei21M/merge.6.b.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --gvcf - /tmp/d5I7jei21M/merge.gvcf.7.a.vcf.gz /tmp/d5I7jei21M/merge.gvcf.7.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --gvcf - /tmp/d5I7jei21M/merge.gvcf.7.a.vcf.gz /tmp/d5I7jei21M/merge.gvcf.7.b.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --gvcf - /tmp/d5I7jei21M/merge.gvcf.7.a.bcf /tmp/d5I7jei21M/merge.gvcf.7.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --gvcf - /tmp/d5I7jei21M/merge.gvcf.7.a.bcf /tmp/d5I7jei21M/merge.gvcf.7.b.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --gvcf - /tmp/d5I7jei21M/merge.gvcf.8.a.vcf.gz /tmp/d5I7jei21M/merge.gvcf.8.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --gvcf - /tmp/d5I7jei21M/merge.gvcf.8.a.vcf.gz /tmp/d5I7jei21M/merge.gvcf.8.b.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --gvcf - /tmp/d5I7jei21M/merge.gvcf.8.a.bcf /tmp/d5I7jei21M/merge.gvcf.8.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --gvcf - /tmp/d5I7jei21M/merge.gvcf.8.a.bcf /tmp/d5I7jei21M/merge.gvcf.8.b.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --force-samples /tmp/d5I7jei21M/merge.7.a.vcf.gz /tmp/d5I7jei21M/merge.7.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --force-samples /tmp/d5I7jei21M/merge.7.a.vcf.gz /tmp/d5I7jei21M/merge.7.b.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --force-samples /tmp/d5I7jei21M/merge.7.a.bcf /tmp/d5I7jei21M/merge.7.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --force-samples /tmp/d5I7jei21M/merge.7.a.bcf /tmp/d5I7jei21M/merge.7.b.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --gvcf /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/gvcf.fa /tmp/d5I7jei21M/merge.gvcf.9a.vcf.gz /tmp/d5I7jei21M/merge.gvcf.9b.vcf.gz /tmp/d5I7jei21M/merge.gvcf.9c.vcf.gz /tmp/d5I7jei21M/merge.gvcf.9d.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --gvcf /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/gvcf.fa /tmp/d5I7jei21M/merge.gvcf.9a.vcf.gz /tmp/d5I7jei21M/merge.gvcf.9b.vcf.gz /tmp/d5I7jei21M/merge.gvcf.9c.vcf.gz /tmp/d5I7jei21M/merge.gvcf.9d.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --gvcf /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/gvcf.fa /tmp/d5I7jei21M/merge.gvcf.9a.bcf /tmp/d5I7jei21M/merge.gvcf.9b.bcf /tmp/d5I7jei21M/merge.gvcf.9c.bcf /tmp/d5I7jei21M/merge.gvcf.9d.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --gvcf /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/gvcf.fa /tmp/d5I7jei21M/merge.gvcf.9a.bcf /tmp/d5I7jei21M/merge.gvcf.9b.bcf /tmp/d5I7jei21M/merge.gvcf.9c.bcf /tmp/d5I7jei21M/merge.gvcf.9d.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --gvcf /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/gvcf.fa -r 22:21-23 /tmp/d5I7jei21M/merge.gvcf.9a.vcf.gz /tmp/d5I7jei21M/merge.gvcf.9b.vcf.gz /tmp/d5I7jei21M/merge.gvcf.9c.vcf.gz /tmp/d5I7jei21M/merge.gvcf.9d.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --gvcf /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/gvcf.fa -r 22:21-23 /tmp/d5I7jei21M/merge.gvcf.9a.vcf.gz /tmp/d5I7jei21M/merge.gvcf.9b.vcf.gz /tmp/d5I7jei21M/merge.gvcf.9c.vcf.gz /tmp/d5I7jei21M/merge.gvcf.9d.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --gvcf /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/gvcf.fa -r 22:21-23 /tmp/d5I7jei21M/merge.gvcf.9a.bcf /tmp/d5I7jei21M/merge.gvcf.9b.bcf /tmp/d5I7jei21M/merge.gvcf.9c.bcf /tmp/d5I7jei21M/merge.gvcf.9d.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --gvcf /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/gvcf.fa -r 22:21-23 /tmp/d5I7jei21M/merge.gvcf.9a.bcf /tmp/d5I7jei21M/merge.gvcf.9b.bcf /tmp/d5I7jei21M/merge.gvcf.9c.bcf /tmp/d5I7jei21M/merge.gvcf.9d.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --gvcf /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/gvcf.fa /tmp/d5I7jei21M/merge.gvcf.9a.vcf.gz /tmp/d5I7jei21M/merge.gvcf.9b.vcf.gz /tmp/d5I7jei21M/merge.gvcf.9c.vcf.gz /tmp/d5I7jei21M/merge.gvcf.9d.vcf.gz /tmp/d5I7jei21M/merge.gvcf.9e.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --gvcf /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/gvcf.fa /tmp/d5I7jei21M/merge.gvcf.9a.vcf.gz /tmp/d5I7jei21M/merge.gvcf.9b.vcf.gz /tmp/d5I7jei21M/merge.gvcf.9c.vcf.gz /tmp/d5I7jei21M/merge.gvcf.9d.vcf.gz /tmp/d5I7jei21M/merge.gvcf.9e.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --gvcf /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/gvcf.fa /tmp/d5I7jei21M/merge.gvcf.9a.bcf /tmp/d5I7jei21M/merge.gvcf.9b.bcf /tmp/d5I7jei21M/merge.gvcf.9c.bcf /tmp/d5I7jei21M/merge.gvcf.9d.bcf /tmp/d5I7jei21M/merge.gvcf.9e.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --gvcf /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/gvcf.fa /tmp/d5I7jei21M/merge.gvcf.9a.bcf /tmp/d5I7jei21M/merge.gvcf.9b.bcf /tmp/d5I7jei21M/merge.gvcf.9c.bcf /tmp/d5I7jei21M/merge.gvcf.9d.bcf /tmp/d5I7jei21M/merge.gvcf.9e.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --gvcf /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/gvcf.fa -r 22:21-23 /tmp/d5I7jei21M/merge.gvcf.9a.vcf.gz /tmp/d5I7jei21M/merge.gvcf.9b.vcf.gz /tmp/d5I7jei21M/merge.gvcf.9c.vcf.gz /tmp/d5I7jei21M/merge.gvcf.9d.vcf.gz /tmp/d5I7jei21M/merge.gvcf.9e.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --gvcf /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/gvcf.fa -r 22:21-23 /tmp/d5I7jei21M/merge.gvcf.9a.vcf.gz /tmp/d5I7jei21M/merge.gvcf.9b.vcf.gz /tmp/d5I7jei21M/merge.gvcf.9c.vcf.gz /tmp/d5I7jei21M/merge.gvcf.9d.vcf.gz /tmp/d5I7jei21M/merge.gvcf.9e.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --gvcf /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/gvcf.fa -r 22:21-23 /tmp/d5I7jei21M/merge.gvcf.9a.bcf /tmp/d5I7jei21M/merge.gvcf.9b.bcf /tmp/d5I7jei21M/merge.gvcf.9c.bcf /tmp/d5I7jei21M/merge.gvcf.9d.bcf /tmp/d5I7jei21M/merge.gvcf.9e.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --gvcf /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/gvcf.fa -r 22:21-23 /tmp/d5I7jei21M/merge.gvcf.9a.bcf /tmp/d5I7jei21M/merge.gvcf.9b.bcf /tmp/d5I7jei21M/merge.gvcf.9c.bcf /tmp/d5I7jei21M/merge.gvcf.9d.bcf /tmp/d5I7jei21M/merge.gvcf.9e.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version  /tmp/d5I7jei21M/merge.gvcf.10.a.vcf.gz /tmp/d5I7jei21M/merge.gvcf.10.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob  /tmp/d5I7jei21M/merge.gvcf.10.a.vcf.gz /tmp/d5I7jei21M/merge.gvcf.10.b.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version  /tmp/d5I7jei21M/merge.gvcf.10.a.bcf /tmp/d5I7jei21M/merge.gvcf.10.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob  /tmp/d5I7jei21M/merge.gvcf.10.a.bcf /tmp/d5I7jei21M/merge.gvcf.10.b.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -m none /tmp/d5I7jei21M/merge.gvcf.10.a.vcf.gz /tmp/d5I7jei21M/merge.gvcf.10.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob -m none /tmp/d5I7jei21M/merge.gvcf.10.a.vcf.gz /tmp/d5I7jei21M/merge.gvcf.10.b.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -m none /tmp/d5I7jei21M/merge.gvcf.10.a.bcf /tmp/d5I7jei21M/merge.gvcf.10.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob -m none /tmp/d5I7jei21M/merge.gvcf.10.a.bcf /tmp/d5I7jei21M/merge.gvcf.10.b.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/merge.gvcf.10.fa /tmp/d5I7jei21M/merge.gvcf.10.a.vcf.gz /tmp/d5I7jei21M/merge.gvcf.10.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/merge.gvcf.10.fa /tmp/d5I7jei21M/merge.gvcf.10.a.vcf.gz /tmp/d5I7jei21M/merge.gvcf.10.b.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/merge.gvcf.10.fa /tmp/d5I7jei21M/merge.gvcf.10.a.bcf /tmp/d5I7jei21M/merge.gvcf.10.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/merge.gvcf.10.fa /tmp/d5I7jei21M/merge.gvcf.10.a.bcf /tmp/d5I7jei21M/merge.gvcf.10.b.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/merge.gvcf.10.fa -m none /tmp/d5I7jei21M/merge.gvcf.10.a.vcf.gz /tmp/d5I7jei21M/merge.gvcf.10.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/merge.gvcf.10.fa -m none /tmp/d5I7jei21M/merge.gvcf.10.a.vcf.gz /tmp/d5I7jei21M/merge.gvcf.10.b.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/merge.gvcf.10.fa -m none /tmp/d5I7jei21M/merge.gvcf.10.a.bcf /tmp/d5I7jei21M/merge.gvcf.10.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/merge.gvcf.10.fa -m none /tmp/d5I7jei21M/merge.gvcf.10.a.bcf /tmp/d5I7jei21M/merge.gvcf.10.b.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version  /tmp/d5I7jei21M/merge.noidx.a.vcf.gz /tmp/d5I7jei21M/merge.noidx.b.vcf.gz /tmp/d5I7jei21M/merge.noidx.c.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob  /tmp/d5I7jei21M/merge.noidx.a.vcf.gz /tmp/d5I7jei21M/merge.noidx.b.vcf.gz /tmp/d5I7jei21M/merge.noidx.c.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version  /tmp/d5I7jei21M/merge.noidx.a.bcf /tmp/d5I7jei21M/merge.noidx.b.bcf /tmp/d5I7jei21M/merge.noidx.c.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob  /tmp/d5I7jei21M/merge.noidx.a.bcf /tmp/d5I7jei21M/merge.noidx.b.bcf /tmp/d5I7jei21M/merge.noidx.c.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --no-index /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/merge.noidx.a.vcf /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/merge.noidx.b.vcf /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/merge.noidx.c.vcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --no-index /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/merge.noidx.a.vcf /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/merge.noidx.b.vcf /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/merge.noidx.c.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --no-index /tmp/d5I7jei21M/merge.noidx.a.bcf /tmp/d5I7jei21M/merge.noidx.b.bcf /tmp/d5I7jei21M/merge.noidx.c.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --no-index /tmp/d5I7jei21M/merge.noidx.a.bcf /tmp/d5I7jei21M/merge.noidx.b.bcf /tmp/d5I7jei21M/merge.noidx.c.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version  /tmp/d5I7jei21M/merge.8.a.vcf.gz /tmp/d5I7jei21M/merge.8.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob  /tmp/d5I7jei21M/merge.8.a.vcf.gz /tmp/d5I7jei21M/merge.8.b.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version  /tmp/d5I7jei21M/merge.8.a.bcf /tmp/d5I7jei21M/merge.8.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob  /tmp/d5I7jei21M/merge.8.a.bcf /tmp/d5I7jei21M/merge.8.b.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -i AN:sum,AC:sum /tmp/d5I7jei21M/merge.8.a.vcf.gz /tmp/d5I7jei21M/merge.8.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob -i AN:sum,AC:sum /tmp/d5I7jei21M/merge.8.a.vcf.gz /tmp/d5I7jei21M/merge.8.b.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -i AN:sum,AC:sum /tmp/d5I7jei21M/merge.8.a.bcf /tmp/d5I7jei21M/merge.8.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob -i AN:sum,AC:sum /tmp/d5I7jei21M/merge.8.a.bcf /tmp/d5I7jei21M/merge.8.b.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version  /tmp/d5I7jei21M/merge.9.a.vcf.gz /tmp/d5I7jei21M/merge.9.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob  /tmp/d5I7jei21M/merge.9.a.vcf.gz /tmp/d5I7jei21M/merge.9.b.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version  /tmp/d5I7jei21M/merge.9.a.bcf /tmp/d5I7jei21M/merge.9.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob  /tmp/d5I7jei21M/merge.9.a.bcf /tmp/d5I7jei21M/merge.9.b.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -i AN:sum,AC:sum /tmp/d5I7jei21M/merge.9.a.vcf.gz /tmp/d5I7jei21M/merge.9.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob -i AN:sum,AC:sum /tmp/d5I7jei21M/merge.9.a.vcf.gz /tmp/d5I7jei21M/merge.9.b.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -i AN:sum,AC:sum /tmp/d5I7jei21M/merge.9.a.bcf /tmp/d5I7jei21M/merge.9.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob -i AN:sum,AC:sum /tmp/d5I7jei21M/merge.9.a.bcf /tmp/d5I7jei21M/merge.9.b.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -m none /tmp/d5I7jei21M/merge.10.a.vcf.gz /tmp/d5I7jei21M/merge.10.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob -m none /tmp/d5I7jei21M/merge.10.a.vcf.gz /tmp/d5I7jei21M/merge.10.b.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -m none /tmp/d5I7jei21M/merge.10.a.bcf /tmp/d5I7jei21M/merge.10.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob -m none /tmp/d5I7jei21M/merge.10.a.bcf /tmp/d5I7jei21M/merge.10.b.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -m both /tmp/d5I7jei21M/merge.10.a.vcf.gz /tmp/d5I7jei21M/merge.10.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob -m both /tmp/d5I7jei21M/merge.10.a.vcf.gz /tmp/d5I7jei21M/merge.10.b.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -m both /tmp/d5I7jei21M/merge.10.a.bcf /tmp/d5I7jei21M/merge.10.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob -m both /tmp/d5I7jei21M/merge.10.a.bcf /tmp/d5I7jei21M/merge.10.b.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -m snp-ins-del /tmp/d5I7jei21M/merge.10.a.vcf.gz /tmp/d5I7jei21M/merge.10.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob -m snp-ins-del /tmp/d5I7jei21M/merge.10.a.vcf.gz /tmp/d5I7jei21M/merge.10.b.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -m snp-ins-del /tmp/d5I7jei21M/merge.10.a.bcf /tmp/d5I7jei21M/merge.10.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob -m snp-ins-del /tmp/d5I7jei21M/merge.10.a.bcf /tmp/d5I7jei21M/merge.10.b.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --gvcf - /tmp/d5I7jei21M/merge.mrules.1.a.vcf.gz /tmp/d5I7jei21M/merge.mrules.1.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --gvcf - /tmp/d5I7jei21M/merge.mrules.1.a.vcf.gz /tmp/d5I7jei21M/merge.mrules.1.b.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --gvcf - /tmp/d5I7jei21M/merge.mrules.1.a.bcf /tmp/d5I7jei21M/merge.mrules.1.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --gvcf - /tmp/d5I7jei21M/merge.mrules.1.a.bcf /tmp/d5I7jei21M/merge.mrules.1.b.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --gvcf - -M AD:.,PL:. /tmp/d5I7jei21M/merge.mrules.1.a.vcf.gz /tmp/d5I7jei21M/merge.mrules.1.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --gvcf - -M AD:.,PL:. /tmp/d5I7jei21M/merge.mrules.1.a.vcf.gz /tmp/d5I7jei21M/merge.mrules.1.b.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --gvcf - -M AD:.,PL:. /tmp/d5I7jei21M/merge.mrules.1.a.bcf /tmp/d5I7jei21M/merge.mrules.1.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --gvcf - -M AD:.,PL:. /tmp/d5I7jei21M/merge.mrules.1.a.bcf /tmp/d5I7jei21M/merge.mrules.1.b.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --gvcf - /tmp/d5I7jei21M/merge.gvcf.5.a.vcf.gz /tmp/d5I7jei21M/merge.gvcf.5.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --gvcf - /tmp/d5I7jei21M/merge.gvcf.5.a.vcf.gz /tmp/d5I7jei21M/merge.gvcf.5.b.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --gvcf - /tmp/d5I7jei21M/merge.gvcf.5.a.bcf /tmp/d5I7jei21M/merge.gvcf.5.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --gvcf - /tmp/d5I7jei21M/merge.gvcf.5.a.bcf /tmp/d5I7jei21M/merge.gvcf.5.b.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --gvcf - --merge none /tmp/d5I7jei21M/merge.gvcf.5.a.vcf.gz /tmp/d5I7jei21M/merge.gvcf.5.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --gvcf - --merge none /tmp/d5I7jei21M/merge.gvcf.5.a.vcf.gz /tmp/d5I7jei21M/merge.gvcf.5.b.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --gvcf - --merge none /tmp/d5I7jei21M/merge.gvcf.5.a.bcf /tmp/d5I7jei21M/merge.gvcf.5.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --gvcf - --merge none /tmp/d5I7jei21M/merge.gvcf.5.a.bcf /tmp/d5I7jei21M/merge.gvcf.5.b.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --gvcf - /tmp/d5I7jei21M/merge.gvcf.11.a.vcf.gz /tmp/d5I7jei21M/merge.gvcf.11.b.vcf.gz /tmp/d5I7jei21M/merge.gvcf.11.c.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --gvcf - /tmp/d5I7jei21M/merge.gvcf.11.a.vcf.gz /tmp/d5I7jei21M/merge.gvcf.11.b.vcf.gz /tmp/d5I7jei21M/merge.gvcf.11.c.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version --gvcf - /tmp/d5I7jei21M/merge.gvcf.11.a.bcf /tmp/d5I7jei21M/merge.gvcf.11.b.bcf /tmp/d5I7jei21M/merge.gvcf.11.c.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools merge --no-version -Ob --gvcf - /tmp/d5I7jei21M/merge.gvcf.11.a.bcf /tmp/d5I7jei21M/merge.gvcf.11.b.bcf /tmp/d5I7jei21M/merge.gvcf.11.c.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version | grep -v ^##bcftools_
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '[%CHROM\t%POS\t%GT\t%LAA\t%smpl_count(FMT/LAA)\n]\n' /tmp/d5I7jei21M/smpl-count.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/smpl-count.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '[%CHROM\t%POS\t%GT\t%LAA\t%smpl_count(FMT/LAA)\n]\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '[%CHROM\t%POS\t%GT\t%LAA\t%smpl_count(FMT/LAA)\n]\n' -i'smpl_count(LAA)==1' /tmp/d5I7jei21M/smpl-count.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/smpl-count.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '[%CHROM\t%POS\t%GT\t%LAA\t%smpl_count(FMT/LAA)\n]\n' -i'smpl_count(LAA)==1'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '[%CHROM\t%POS\t%GT\t%LAA\t%smpl_count(FMT/LAA)\n]\n' -i'smpl_count(LAA)==1 & GT="hom"' /tmp/d5I7jei21M/smpl-count.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/smpl-count.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '[%CHROM\t%POS\t%GT\t%LAA\t%smpl_count(FMT/LAA)\n]\n' -i'smpl_count(LAA)==1 & GT="hom"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '[%CHROM\t%POS\t%GT\t%LAA\t%smpl_count(FMT/LAA)\n]\n' -i'GT="hom" & smpl_count(LAA)==1' /tmp/d5I7jei21M/smpl-count.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/smpl-count.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '[%CHROM\t%POS\t%GT\t%LAA\t%smpl_count(FMT/LAA)\n]\n' -i'GT="hom" & smpl_count(LAA)==1'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%TAG' -i 'TAG[*]="."' /tmp/d5I7jei21M/query.filter.15.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/query.filter.15.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%TAG' -i 'TAG[*]="."'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%TAG' -i 'TAG[*]~"\."' /tmp/d5I7jei21M/query.filter.15.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/query.filter.15.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%TAG' -i 'TAG[*]~"\."'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%TAG' -i 'TAG[*]!="."' /tmp/d5I7jei21M/query.filter.15.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/query.filter.15.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%TAG' -i 'TAG[*]!="."'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%TAG' -i 'TAG[*]!~"\."' /tmp/d5I7jei21M/query.filter.15.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/query.filter.15.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%TAG' -i 'TAG[*]!~"\."'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%CHROM %POS %ID %REF %ALT %QUAL %FILTER \t %INFO/CHROM %INFO/POS %INFO/ID %INFO/REF %INFO/ALT %INFO/QUAL %INFO/FILTER' /tmp/d5I7jei21M/query.3.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/query.3.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%CHROM %POS %ID %REF %ALT %QUAL %FILTER \t %INFO/CHROM %INFO/POS %INFO/ID %INFO/REF %INFO/ALT %INFO/QUAL %INFO/FILTER'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '[ %CHROM] \t [ %POS] \t [ %ID] \t [ %REF] \t [ %ALT] \t [ %QUAL] \t [ %FILTER]' /tmp/d5I7jei21M/query.3.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/query.3.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '[ %CHROM] \t [ %POS] \t [ %ID] \t [ %REF] \t [ %ALT] \t [ %QUAL] \t [ %FILTER]'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '[ %/CHROM] \t [ %/POS] \t [ %/ID] \t [ %/REF] \t [ %/ALT] \t [ %/QUAL] \t [ %/FILTER]' /tmp/d5I7jei21M/query.3.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/query.3.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '[ %/CHROM] \t [ %/POS] \t [ %/ID] \t [ %/REF] \t [ %/ALT] \t [ %/QUAL] \t [ %/FILTER]'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%CHROM:%POS [ %SAMPLE %GT]' /tmp/d5I7jei21M/query.filter.14.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/query.filter.14.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%CHROM:%POS [ %SAMPLE %GT]'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%CHROM:%POS [ %SAMPLE %GT]' -i'GT="."' /tmp/d5I7jei21M/query.filter.14.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/query.filter.14.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%CHROM:%POS [ %SAMPLE %GT]' -i'GT="."'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%CHROM:%POS [ %SAMPLE %GT]' -i'GT="0|1"' /tmp/d5I7jei21M/query.filter.14.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/query.filter.14.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%CHROM:%POS [ %SAMPLE %GT]' -i'GT="0|1"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%CHROM:%POS\t%INFO/AD\t%SUM(INFO/AD)' /tmp/d5I7jei21M/query.func.1.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/query.func.1.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%CHROM:%POS\t%INFO/AD\t%SUM(INFO/AD)'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%CHROM:%POS\t[%AD ]\t%SUM(FORMAT/AD)' /tmp/d5I7jei21M/query.func.1.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/query.func.1.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%CHROM:%POS\t[%AD ]\t%SUM(FORMAT/AD)'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%CHROM:%POS\t[%AD ]\t[ %SUM(FORMAT/AD)]' /tmp/d5I7jei21M/query.func.1.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/query.func.1.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%CHROM:%POS\t[%AD ]\t[ %SUM(FORMAT/AD)]'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%CHROM:%POS\t[%AD ]\t[ %sSUM(FORMAT/AD)]' /tmp/d5I7jei21M/query.func.1.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/query.func.1.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%CHROM:%POS\t[%AD ]\t[ %sSUM(FORMAT/AD)]'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%CHROM\t%POS\t%CLNREVSTAT\n' -i'CLNREVSTAT="criteria_provided,_conflicting_interpretations"' /tmp/d5I7jei21M/query.string.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/query.string.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%CHROM\t%POS\t%CLNREVSTAT\n' -i'CLNREVSTAT="criteria_provided,_conflicting_interpretations"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%CHROM\t%POS\t%CLNREVSTAT\n' -i'CLNREVSTAT="criteria_provided" || CLNREVSTAT="_conflicting_interpretations"' /tmp/d5I7jei21M/query.string.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/query.string.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%CHROM\t%POS\t%CLNREVSTAT\n' -i'CLNREVSTAT="criteria_provided" || CLNREVSTAT="_conflicting_interpretations"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%CHROM\t%POS\t%CLNREVSTAT\n' -i'CLNREVSTAT="criteria_provided" && CLNREVSTAT="_conflicting_interpretations"' /tmp/d5I7jei21M/query.string.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/query.string.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%CHROM\t%POS\t%CLNREVSTAT\n' -i'CLNREVSTAT="criteria_provided" && CLNREVSTAT="_conflicting_interpretations"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%CHROM\t%POS\t%INFO/STR\n' -i'INFO/STR=@/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/query.string.2.1.txt' /tmp/d5I7jei21M/query.string.2.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/query.string.2.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%CHROM\t%POS\t%INFO/STR\n' -i'INFO/STR=@/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/query.string.2.1.txt'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%CHROM\t%POS[\t%STR]\n' -i'FMT/STR=@/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/query.string.2.2.txt' /tmp/d5I7jei21M/query.string.2.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/query.string.2.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%CHROM\t%POS[\t%STR]\n' -i'FMT/STR=@/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/query.string.2.2.txt'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%CHROM\t%POS\t%REF\t%ALT\t%DP4\t%AN[\t%GT\t%TGT]\n' /tmp/d5I7jei21M/query.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/query.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%CHROM\t%POS\t%REF\t%ALT\t%DP4\t%AN[\t%GT\t%TGT]\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%RSX\t%VKX\n' /tmp/d5I7jei21M/query.variantkey.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/query.variantkey.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%RSX\t%VKX\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%XRI\n' -i'XRI[*]>1111' /tmp/d5I7jei21M/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%XRI\n' -i'XRI[*]>1111'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%XRF\n' -i'XRF[*]=2e6' /tmp/d5I7jei21M/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%XRF\n' -i'XRF[*]=2e6'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%XGS\n' -i'XGS[5]="PQR"' /tmp/d5I7jei21M/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%XGS\n' -i'XGS[5]="PQR"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%XGS\n' -i'XGS[*]="GHI"' /tmp/d5I7jei21M/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%XGS\n' -i'XGS[*]="GHI"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%XGS\n' -i'XGS[2]~"H"' /tmp/d5I7jei21M/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%XGS\n' -i'XGS[2]~"H"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%XGS\n' -i'XGS[3]!~"H" && XGS!="."' /tmp/d5I7jei21M/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%XGS\n' -i'XGS[3]!~"H" && XGS!="."'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%XGS\n' -i'XGS[*]~"H"' /tmp/d5I7jei21M/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%XGS\n' -i'XGS[*]~"H"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS %REF %ALT\n' -i'REF~"C" && ALT[*]~"CT"' /tmp/d5I7jei21M/query.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/query.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS %REF %ALT\n' -i'REF~"C" && ALT[*]~"CT"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS %REF %ALT\n' -i'N_ALT=2' /tmp/d5I7jei21M/query.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/query.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS %REF %ALT\n' -i'N_ALT=2'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS %AN\n' -i'AN!=2*N_SAMPLES' /tmp/d5I7jei21M/query.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/query.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS %AN\n' -i'AN!=2*N_SAMPLES'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS[ %GL]\n' -i'min(abs(GL[*:0]))=10' /tmp/d5I7jei21M/query.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/query.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS[ %GL]\n' -i'min(abs(GL[*:0]))=10'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS %CIGAR\n' -i'strlen(CIGAR[*])=4' /tmp/d5I7jei21M/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS %CIGAR\n' -i'strlen(CIGAR[*])=4'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS[ %GT]\n' -i'AC[0]=3' /tmp/d5I7jei21M/query.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/query.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS[ %GT]\n' -i'AC[0]=3'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS[ %GT]\n' -i'AF[0]=3/4' /tmp/d5I7jei21M/query.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/query.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS[ %GT]\n' -i'AF[0]=3/4'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS[ %GT]\n' -i'MAC[0]=1' /tmp/d5I7jei21M/query.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/query.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS[ %GT]\n' -i'MAC[0]=1'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS[ %GT]\n' -i'MAF[0]=1/4' /tmp/d5I7jei21M/query.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/query.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS[ %GT]\n' -i'MAF[0]=1/4'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'I8=%I8 I16=%I16 I32=%I32 IF=%IF IA8=%IA8 IA16=%IA16 IA32=%IA32 IAF=%IAF IA8=%IA8{1} IA16=%IA16{1} IA32=%IA32{1} IAF=%IAF{1} [ %F8:%F16:%F32:%FF]\n' /tmp/d5I7jei21M/view.vectors.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/view.vectors.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'I8=%I8 I16=%I16 I32=%I32 IF=%IF IA8=%IA8 IA16=%IA16 IA32=%IA32 IAF=%IAF IA8=%IA8{1} IA16=%IA16{1} IA32=%IA32{1} IAF=%IAF{1} [ %F8:%F16:%F32:%FF]\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %GT\n]' -i'GT ="1"' /tmp/d5I7jei21M/query.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/query.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %GT\n]' -i'GT ="1"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %GT\n]' -i'GT!="1"' /tmp/d5I7jei21M/query.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/query.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %GT\n]' -i'GT!="1"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %GT\n]' -e'GT ="1"' /tmp/d5I7jei21M/query.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/query.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %GT\n]' -e'GT ="1"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %GT\n]' -e'GT!="1"' /tmp/d5I7jei21M/query.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/query.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %GT\n]' -e'GT!="1"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%XX_A %XX.A %XX.A0 %xx.a0\n' /tmp/d5I7jei21M/query.2.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/query.2.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%XX_A %XX.A %XX.A0 %xx.a0\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -i'IINT="."'  -f'%POS %IINT\n' /tmp/d5I7jei21M/missing.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/missing.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -i'IINT="."'  -f'%POS %IINT\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -i'IINT!="."' -f'%POS %IINT\n' /tmp/d5I7jei21M/missing.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/missing.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -i'IINT!="."' -f'%POS %IINT\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -e'IINT!="."' -f'%POS %IINT\n' /tmp/d5I7jei21M/missing.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/missing.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -e'IINT!="."' -f'%POS %IINT\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -e'IINT="."'  -f'%POS %IINT\n' /tmp/d5I7jei21M/missing.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/missing.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -e'IINT="."'  -f'%POS %IINT\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -i'IFLT="."'  -f'%POS %IFLT\n' /tmp/d5I7jei21M/missing.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/missing.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -i'IFLT="."'  -f'%POS %IFLT\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -i'IFLT!="."' -f'%POS %IFLT\n' /tmp/d5I7jei21M/missing.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/missing.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -i'IFLT!="."' -f'%POS %IFLT\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -e'IFLT!="."' -f'%POS %IFLT\n' /tmp/d5I7jei21M/missing.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/missing.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -e'IFLT!="."' -f'%POS %IFLT\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -e'IFLT="."'  -f'%POS %IFLT\n' /tmp/d5I7jei21M/missing.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/missing.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -e'IFLT="."'  -f'%POS %IFLT\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -i'ISTR="."'  -f'%POS %ISTR\n' /tmp/d5I7jei21M/missing.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/missing.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -i'ISTR="."'  -f'%POS %ISTR\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -i'ISTR!="."' -f'%POS %ISTR\n' /tmp/d5I7jei21M/missing.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/missing.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -i'ISTR!="."' -f'%POS %ISTR\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -e'ISTR="."'  -f'%POS %ISTR\n' /tmp/d5I7jei21M/missing.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/missing.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -e'ISTR="."'  -f'%POS %ISTR\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -e'ISTR!="."' -f'%POS %ISTR\n' /tmp/d5I7jei21M/missing.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/missing.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -e'ISTR!="."' -f'%POS %ISTR\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -i'FILTER="q11"' -f'%POS %ISTR\n' /tmp/d5I7jei21M/missing.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/missing.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -i'FILTER="q11"' -f'%POS %ISTR\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -i'FILTER="A"' -f'%POS %FILTER\n' /tmp/d5I7jei21M/filter.11.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/filter.11.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -i'FILTER="A"' -f'%POS %FILTER\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -i'FILTER!="A"' -f'%POS %FILTER\n' /tmp/d5I7jei21M/filter.11.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/filter.11.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -i'FILTER!="A"' -f'%POS %FILTER\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -i'FILTER~"A"' -f'%POS %FILTER\n' /tmp/d5I7jei21M/filter.11.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/filter.11.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -i'FILTER~"A"' -f'%POS %FILTER\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -i'FILTER!~"A"' -f'%POS %FILTER\n' /tmp/d5I7jei21M/filter.11.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/filter.11.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -i'FILTER!~"A"' -f'%POS %FILTER\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%LINE' /tmp/d5I7jei21M/query.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/query.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%LINE'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\n' -i'type="snp"' /tmp/d5I7jei21M/query.filter-type.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/query.filter-type.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\n' -i'type="snp"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\n' -i'type~"snp"' /tmp/d5I7jei21M/query.filter-type.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/query.filter-type.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\n' -i'type~"snp"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\n' -i'type!="snp"' /tmp/d5I7jei21M/query.filter-type.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/query.filter-type.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\n' -i'type!="snp"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\n' -i'type!~"snp"' /tmp/d5I7jei21M/query.filter-type.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/query.filter-type.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\n' -i'type!~"snp"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\n' -i'INFO/TYPE="xxx"' /tmp/d5I7jei21M/query.filter-type.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/query.filter-type.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\n' -i'INFO/TYPE="xxx"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%A_AF\t%B_AF\t%C_AF\n' -i'A_AF>=0.0001 || B_AF >= 0.0001 || C_AF >= 0.0001' /tmp/d5I7jei21M/filter-missing-floats.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/filter-missing-floats.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%A_AF\t%B_AF\t%C_AF\n' -i'A_AF>=0.0001 || B_AF >= 0.0001 || C_AF >= 0.0001'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%A_AF\t%B_AF\t%C_AF\n' -e'A_AF>=0.0001 || B_AF >= 0.0001 || C_AF >= 0.0001' /tmp/d5I7jei21M/filter-missing-floats.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/filter-missing-floats.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%A_AF\t%B_AF\t%C_AF\n' -e'A_AF>=0.0001 || B_AF >= 0.0001 || C_AF >= 0.0001'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -i'FMT/FINT!="."' -f'[\t%FINT]\n' /tmp/d5I7jei21M/missing.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/missing.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -i'FMT/FINT!="."' -f'[\t%FINT]\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%GT]\n' -i'GT~"0/[1-9]" || GT~"[1-9]/0"' /tmp/d5I7jei21M/query.filter.2.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/query.filter.2.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%GT]\n' -i'GT~"0/[1-9]" || GT~"[1-9]/0"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %FGS\n]\n' -i'FGS[*:1-2,4]="EE"' /tmp/d5I7jei21M/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %FGS\n]\n' -i'FGS[*:1-2,4]="EE"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %FGS\n]\n' -i'"EE"=FGS[*:1-2,4]' /tmp/d5I7jei21M/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %FGS\n]\n' -i'"EE"=FGS[*:1-2,4]'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %FGI\n]\n' -i'FGI[*:1-2,5]=6' /tmp/d5I7jei21M/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %FGI\n]\n' -i'FGI[*:1-2,5]=6'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %FGI\n]\n' -i'6=FGI[*:1-2,5]' /tmp/d5I7jei21M/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %FGI\n]\n' -i'6=FGI[*:1-2,5]'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %FGF\n]\n' -i'FGF[*:1-3,4]=5e-5' /tmp/d5I7jei21M/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %FGF\n]\n' -i'FGF[*:1-3,4]=5e-5'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %FGS\n]\n' -i'FGS[*:4]!="EE"' /tmp/d5I7jei21M/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %FGS\n]\n' -i'FGS[*:4]!="EE"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %FGS\n]\n' -i'FGS[*:4]="."' /tmp/d5I7jei21M/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %FGS\n]\n' -i'FGS[*:4]="."'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %FGS\n]\n' -i'FGS[*:4]!="."' /tmp/d5I7jei21M/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %FGS\n]\n' -i'FGS[*:4]!="."'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %FGI\n]\n' -i'FGI[*:1-2,5]="."' /tmp/d5I7jei21M/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %FGI\n]\n' -i'FGI[*:1-2,5]="."'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %FGI\n]\n' -i'FGI[*:1-2,5]!="."' /tmp/d5I7jei21M/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %FGI\n]\n' -i'FGI[*:1-2,5]!="."'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %DP\n]\n' -i'FMT/DP=1 | FMT/DP=2' /tmp/d5I7jei21M/filter.5.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/filter.5.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %DP\n]\n' -i'FMT/DP=1 | FMT/DP=2'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %DP\n]\n' -i'FMT/DP=1 | FMT/DP="."' /tmp/d5I7jei21M/filter.5.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/filter.5.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %DP\n]\n' -i'FMT/DP=1 | FMT/DP="."'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %DP\n]\n' -i'FMT/DP=19' /tmp/d5I7jei21M/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %DP\n]\n' -i'FMT/DP=19'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %DP\n]\n' -i'FMT/DP=19 |  FMT/DP="."' /tmp/d5I7jei21M/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %DP\n]\n' -i'FMT/DP=19 |  FMT/DP="."'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %DP\n]\n' -i'FMT/DP=19 || FMT/DP="."' /tmp/d5I7jei21M/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %DP\n]\n' -i'FMT/DP=19 || FMT/DP="."'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %DP\n]\n' -i'FMT/DP[0]=19' /tmp/d5I7jei21M/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %DP\n]\n' -i'FMT/DP[0]=19'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %DP\n]\n' -i'FMT/DP[0]!=19' /tmp/d5I7jei21M/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %DP\n]\n' -i'FMT/DP[0]!=19'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %DP %GQ\n]\n' -i'FMT/DP=19 &  FMT/GQ=589' /tmp/d5I7jei21M/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %DP %GQ\n]\n' -i'FMT/DP=19 &  FMT/GQ=589'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %DP %GQ\n]\n' -i'FMT/DP=19 && FMT/GQ=1' /tmp/d5I7jei21M/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %DP %GQ\n]\n' -i'FMT/DP=19 && FMT/GQ=1'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[\t%GT\n]\n' -i'GT~"1" && GT~"2"' /tmp/d5I7jei21M/query.filter.3.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/query.filter.3.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[\t%GT\n]\n' -i'GT~"1" && GT~"2"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[\t%GT\n]\n' -i'GT~"1" &  GT~"2"' /tmp/d5I7jei21M/query.filter.3.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/query.filter.3.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[\t%GT\n]\n' -i'GT~"1" &  GT~"2"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS[\t%GT]\n' -i'COUNT(GT="het")=1' /tmp/d5I7jei21M/query.filter.3.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/query.filter.3.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS[\t%GT]\n' -i'COUNT(GT="het")=1'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS  %SAMPLE  %AD\n]\n' -i'AD[:0]+AD[:1] > 12' /tmp/d5I7jei21M/filter.5.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/filter.5.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS  %SAMPLE  %AD\n]\n' -i'AD[:0]+AD[:1] > 12'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT[\t%GT]\n' -e'TYPE!="snp" || ALT="*"' /tmp/d5I7jei21M/query.filter.4.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/query.filter.4.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT[\t%GT]\n' -e'TYPE!="snp" || ALT="*"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%ID\n' -i 'ID=@/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/query.56.out' /tmp/d5I7jei21M/view.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/view.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%ID\n' -i 'ID=@/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/query.56.out'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS\t%SAMPLE\t%GT\t%AD\n]' -i'GT="het" & binom(FMT/AD)>0.01' /tmp/d5I7jei21M/query.filter.5.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/query.filter.5.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS\t%SAMPLE\t%GT\t%AD\n]' -i'GT="het" & binom(FMT/AD)>0.01'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS\t%SAMPLE\t%GT\t%AD\n]' -i'GT="het" & binom(FMT/AD[:0],FMT/AD[:1])>0.01' /tmp/d5I7jei21M/query.filter.5.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/query.filter.5.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS\t%SAMPLE\t%GT\t%AD\n]' -i'GT="het" & binom(FMT/AD[:0],FMT/AD[:1])>0.01'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%AD\n' -i'binom(INFO/AD[0],INFO/AD[1])>0.01' /tmp/d5I7jei21M/query.filter.5.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/query.filter.5.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%AD\n' -i'binom(INFO/AD[0],INFO/AD[1])>0.01'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS\t%GT\t%SAMPLE\t%AD\n]' -i'FMT/AD[GT]==10' /tmp/d5I7jei21M/query.filter.5.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/query.filter.5.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS\t%GT\t%SAMPLE\t%AD\n]' -i'FMT/AD[GT]==10'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS\t%GT\t%SAMPLE\t%AD\n]' -i'sSUM(FMT/AD[GT])==210' /tmp/d5I7jei21M/query.filter.5.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/query.filter.5.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS\t%GT\t%SAMPLE\t%AD\n]' -i'sSUM(FMT/AD[GT])==210'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS\t%GT\t%SAMPLE\t%AD\n]' -i'FMT/AD[0:GT]==30' /tmp/d5I7jei21M/query.filter.5.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/query.filter.5.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS\t%GT\t%SAMPLE\t%AD\n]' -i'FMT/AD[0:GT]==30'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%GT %TC %TS %TI %TF\n]' -i'FMT/TF[:GT]==1 && FMT/TF[:GT]==2' /tmp/d5I7jei21M/query.gtidx.1.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/query.gtidx.1.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%GT %TC %TS %TI %TF\n]' -i'FMT/TF[:GT]==1 && FMT/TF[:GT]==2'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%GT %TC %TS %TI %TF\n]' -i'FMT/TI[:GT]==1 && FMT/TF[:GT]==2' /tmp/d5I7jei21M/query.gtidx.1.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/query.gtidx.1.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%GT %TC %TS %TI %TF\n]' -i'FMT/TI[:GT]==1 && FMT/TF[:GT]==2'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%GT %TC %TS %TI %TF\n]' -i'FMT/TS[:GT]=="BB" && FMT/TS[:GT]=="CC"' /tmp/d5I7jei21M/query.gtidx.1.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/query.gtidx.1.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%GT %TC %TS %TI %TF\n]' -i'FMT/TS[:GT]=="BB" && FMT/TS[:GT]=="CC"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%GT %TC %TS %TI %TF\n]' -i'FMT/TC[:GT]=="B"  && FMT/TC[:GT]=="C"' /tmp/d5I7jei21M/query.gtidx.1.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/query.gtidx.1.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%GT %TC %TS %TI %TF\n]' -i'FMT/TC[:GT]=="B"  && FMT/TC[:GT]=="C"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%GT %TI\n]' -i'FMT/TI[:GT]=="."' /tmp/d5I7jei21M/query.gtidx.1.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/query.gtidx.1.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%GT %TI\n]' -i'FMT/TI[:GT]=="."'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%CHROM %POS\n' -i'CHROM="4"' /tmp/d5I7jei21M/query.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/query.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%CHROM %POS\n' -i'CHROM="4"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%TAG1\n' -i'(TAG1>=-129 && TAG1<=-120) || (TAG1>=-32769 && TAG1<=-32760)' /tmp/d5I7jei21M/query.negative.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/query.negative.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%TAG1\n' -i'(TAG1>=-129 && TAG1<=-120) || (TAG1>=-32769 && TAG1<=-32760)'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%TAGV1\n' -i'(TAGV1>=-129 && TAGV1<=-120) || (TAGV1>=-32769 && TAGV1<=-32760)' /tmp/d5I7jei21M/query.negative.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/query.negative.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%TAGV1\n' -i'(TAGV1>=-129 && TAGV1<=-120) || (TAGV1>=-32769 && TAGV1<=-32760)'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%TAG2\n' -i'(TAG2>=-129 && TAG2<=-120) || (TAG2>=-32769 && TAG2<=-32760)' /tmp/d5I7jei21M/query.negative.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/query.negative.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%TAG2\n' -i'(TAG2>=-129 && TAG2<=-120) || (TAG2>=-32769 && TAG2<=-32760)'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%TAGV2\n' -i'(TAGV2>=-129 && TAGV2<=-120) || (TAGV2>=-32769 && TAGV2<=-32760)' /tmp/d5I7jei21M/query.negative.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/query.negative.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%TAGV2\n' -i'(TAGV2>=-129 && TAGV2<=-120) || (TAGV2>=-32769 && TAGV2<=-32760)'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS\t%SAMPLE\t%GQ\n]' -i'N_PASS(GQ<20)==1' /tmp/d5I7jei21M/query.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/query.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS\t%SAMPLE\t%GQ\n]' -i'N_PASS(GQ<20)==1'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS\t%SAMPLE\t%GT\n]' -i'N_PASS(GT="alt")==1' /tmp/d5I7jei21M/query.filter.11.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/query.filter.11.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS\t%SAMPLE\t%GT\n]' -i'N_PASS(GT="alt")==1'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS\t%SAMPLE\t%GT\n]' -i'N_PASS(GT="alt")!=1' /tmp/d5I7jei21M/query.filter.11.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/query.filter.11.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS\t%SAMPLE\t%GT\n]' -i'N_PASS(GT="alt")!=1'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS\t%SAMPLE\t%GT\n]' -e'N_PASS(GT="alt")==1' /tmp/d5I7jei21M/query.filter.11.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/query.filter.11.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS\t%SAMPLE\t%GT\n]' -e'N_PASS(GT="alt")==1'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS\t%SAMPLE\t%GT\n]' -e'N_PASS(GT="alt")!=1' /tmp/d5I7jei21M/query.filter.11.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/query.filter.11.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS\t%SAMPLE\t%GT\n]' -e'N_PASS(GT="alt")!=1'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%CHROM\t%POS\t%INFO\t%FORMAT\n' -s D,C /tmp/d5I7jei21M/query.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/query.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%CHROM\t%POS\t%INFO\t%FORMAT\n' -s D,C
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %GT %AD %PBINOM(AD)\n]' -i'phred(binom(FMT/AD))>=0' /tmp/d5I7jei21M/query.pbinom.1.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/query.pbinom.1.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS %SAMPLE %GT %AD %PBINOM(AD)\n]' -i'phred(binom(FMT/AD))>=0'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\n' -i'POS==16777217 || POS==33554432 || POS=118673904' /tmp/d5I7jei21M/query.filter.6.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/query.filter.6.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\n' -i'POS==16777217 || POS==33554432 || POS=118673904'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%II[\t%FI]\n' -i'sum(II)==6' /tmp/d5I7jei21M/query.filter.7.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/query.filter.7.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%II[\t%FI]\n' -i'sum(II)==6'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%II[\t%FI]\n' -i'sum(FORMAT/FI)==7' /tmp/d5I7jei21M/query.filter.7.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/query.filter.7.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%II[\t%FI]\n' -i'sum(FORMAT/FI)==7'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%II[\t%FI]\n' -i'avg(II)==2' /tmp/d5I7jei21M/query.filter.7.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/query.filter.7.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%II[\t%FI]\n' -i'avg(II)==2'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%II[\t%FI]\n' -i'avg(FORMAT/FI)==1.75' /tmp/d5I7jei21M/query.filter.7.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/query.filter.7.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%II[\t%FI]\n' -i'avg(FORMAT/FI)==1.75'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%II[\t%FI]\n' -i'mean(II)==2' /tmp/d5I7jei21M/query.filter.7.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/query.filter.7.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%II[\t%FI]\n' -i'mean(II)==2'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%II[\t%FI]\n' -i'mean(FORMAT/FI)==1.75' /tmp/d5I7jei21M/query.filter.7.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/query.filter.7.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%II[\t%FI]\n' -i'mean(FORMAT/FI)==1.75'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%II[\t%FI]\n' -i'median(II)==2' /tmp/d5I7jei21M/query.filter.7.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/query.filter.7.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%II[\t%FI]\n' -i'median(II)==2'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%II[\t%FI]\n' -i'median(FORMAT/FI)==1.5' /tmp/d5I7jei21M/query.filter.7.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/query.filter.7.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%II[\t%FI]\n' -i'median(FORMAT/FI)==1.5'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%ILEN\n' -i'%ILEN==1' /tmp/d5I7jei21M/query.filter.8.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/query.filter.8.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%ILEN\n' -i'%ILEN==1'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%ILEN\n' -i'ILEN==1' /tmp/d5I7jei21M/query.filter.8.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/query.filter.8.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%ILEN\n' -i'ILEN==1'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS  %SAMPLE  %AD\n]' -i'FMT/AD[:0] < FMT/AD[:1]' /tmp/d5I7jei21M/query.filter.9.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/query.filter.9.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS  %SAMPLE  %AD\n]' -i'FMT/AD[:0] < FMT/AD[:1]'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS  %SAMPLE  %AD\n]' -i'FMT/AD[:0] > FMT/AD[:1]' /tmp/d5I7jei21M/query.filter.9.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/query.filter.9.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS  %SAMPLE  %AD\n]' -i'FMT/AD[:0] > FMT/AD[:1]'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[ %AD\n]' -i'AD[:1] / sum(AD[*]) > 0.5' /tmp/d5I7jei21M/query.filter.13.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/query.filter.13.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[ %AD\n]' -i'AD[:1] / sum(AD[*]) > 0.5'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS  %NUM_TAG\n' -i'COUNT(INFO/NUM_TAG)=2' /tmp/d5I7jei21M/query.filter.10.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/query.filter.10.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS  %NUM_TAG\n' -i'COUNT(INFO/NUM_TAG)=2'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS  %STR_TAG\n' -i'COUNT(INFO/STR_TAG)=2' /tmp/d5I7jei21M/query.filter.10.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/query.filter.10.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS  %STR_TAG\n' -i'COUNT(INFO/STR_TAG)=2'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%CHROM:%POS\t%N_PASS(GT="alt" & GQ>110)\t[\t%GT]\t[\t%GQ]\n' /tmp/d5I7jei21M/query.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/query.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%CHROM:%POS\t%N_PASS(GT="alt" & GQ>110)\t[\t%GT]\t[\t%GQ]\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%CHROM:%POS[\t%SAMPLE=%GT]\n' -e 'GT="mis"' -s 1,3,0 /tmp/d5I7jei21M/query.filter.12.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/query.filter.12.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%CHROM:%POS[\t%SAMPLE=%GT]\n' -e 'GT="mis"' -s 1,3,0
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%CHROM:%POS[\t%SAMPLE=%GT]\n' -e 'GT="mis"' -s 0,1,3 /tmp/d5I7jei21M/query.filter.12.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/query.filter.12.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%CHROM:%POS[\t%SAMPLE=%GT]\n' -e 'GT="mis"' -s 0,1,3
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f "[%SAMPLE %GT\n]" -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/query.smpl.11.txt /tmp/d5I7jei21M/query.smpl.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/query.smpl.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f "[%SAMPLE %GT\n]" -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/query.smpl.11.txt
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -l -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/query.smpl.11.txt /tmp/d5I7jei21M/query.smpl.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/query.smpl.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -l -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/query.smpl.11.txt
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f "[%SAMPLE %GT\n]" -S ^/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/query.smpl.11.txt /tmp/d5I7jei21M/query.smpl.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/query.smpl.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f "[%SAMPLE %GT\n]" -S ^/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/query.smpl.11.txt
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -l -S ^/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/query.smpl.11.txt /tmp/d5I7jei21M/query.smpl.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/query.smpl.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -l -S ^/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/query.smpl.11.txt
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f "[%SAMPLE %GT\n]" -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/query.smpl.txt /tmp/d5I7jei21M/query.smpl.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/query.smpl.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f "[%SAMPLE %GT\n]" -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/query.smpl.txt
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -l -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/query.smpl.txt /tmp/d5I7jei21M/query.smpl.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/query.smpl.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -l -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/query.smpl.txt
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%ID\n' -i'ID~"s12"' /tmp/d5I7jei21M/query.filter.id.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/query.filter.id.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%ID\n' -i'ID~"s12"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%ID\n' -i'ID="rs123"' /tmp/d5I7jei21M/query.filter.id.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/query.filter.id.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%ID\n' -i'ID="rs123"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%ID\n' -i'ID="abc"' /tmp/d5I7jei21M/query.filter.id.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/query.filter.id.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%ID\n' -i'ID="abc"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%ID\n' -i'ID=@/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/query.filter.id.3.txt' /tmp/d5I7jei21M/query.filter.id.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/query.filter.id.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%ID\n' -i'ID=@/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/query.filter.id.3.txt'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%ID\n' -i'ID!="abc"' /tmp/d5I7jei21M/query.filter.id.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/query.filter.id.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%ID\n' -i'ID!="abc"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%ID\n' -i'ID!=@/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/query.filter.id.3.txt' /tmp/d5I7jei21M/query.filter.id.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/query.filter.id.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%ID\n' -i'ID!=@/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/query.filter.id.3.txt'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -i'FILTER="A"' -f'%FILTER\n' /tmp/d5I7jei21M/filter.12.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/filter.12.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -i'FILTER="A"' -f'%FILTER\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -i'FILTER~"A"' -f'%FILTER\n' /tmp/d5I7jei21M/filter.12.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/filter.12.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -i'FILTER~"A"' -f'%FILTER\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -i'FILTER="A;B"' -f'%FILTER\n' /tmp/d5I7jei21M/filter.12.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/filter.12.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -i'FILTER="A;B"' -f'%FILTER\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -i'FILTER!="A;B"' -f'%FILTER\n' /tmp/d5I7jei21M/filter.12.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/filter.12.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -i'FILTER!="A;B"' -f'%FILTER\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -i'FILTER~"A;B"' -f'%FILTER\n' /tmp/d5I7jei21M/filter.12.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/filter.12.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -i'FILTER~"A;B"' -f'%FILTER\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -i'FILTER!~"A;B"' -f'%FILTER\n' /tmp/d5I7jei21M/filter.12.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/filter.12.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -i'FILTER!~"A;B"' -f'%FILTER\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -i'DP%10==2' -f'[ %DP]\n' /tmp/d5I7jei21M/filter.10.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/filter.10.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -i'DP%10==2' -f'[ %DP]\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -i'REF="N"' -f'%CHROM %POS %REF %ALT %QUAL\n' /tmp/d5I7jei21M/filter.13.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/filter.13.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -i'REF="N"' -f'%CHROM %POS %REF %ALT %QUAL\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -H -f'[%CHROM %POS  %SAMPLE %DP %GT\n]' /tmp/d5I7jei21M/query.header.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/query.header.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -H -f'[%CHROM %POS  %SAMPLE %DP %GT\n]'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -H -f'[%CHROM %POS  %SAMPLE %DP %GT\t]\n' /tmp/d5I7jei21M/query.header.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/query.header.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -H -f'[%CHROM %POS  %SAMPLE %DP %GT\t]\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -H -f'%CHROM %POS[ %SAMPLE %DP %GT]\n' /tmp/d5I7jei21M/query.header.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/query.header.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -H -f'%CHROM %POS[ %SAMPLE %DP %GT]\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -H -f'%CHROM %POS[ %SAMPLE %DP %GT]' /tmp/d5I7jei21M/query.header.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/query.header.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -H -f'%CHROM %POS[ %SAMPLE %DP %GT]'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -H -f'%CHROM %POS[ %SAMPLE][ %DP][ %GT]\n' /tmp/d5I7jei21M/query.header.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/query.header.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -H -f'%CHROM %POS[ %SAMPLE][ %DP][ %GT]\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -H -f'%CHROM %POS[ %SAMPLE][ %DP][ %GT]' /tmp/d5I7jei21M/query.header.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/query.header.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -H -f'%CHROM %POS[ %SAMPLE][ %DP][ %GT]'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -HH -f'%CHROM %POS[ %SAMPLE][ %DP][ %GT]' /tmp/d5I7jei21M/query.header.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/query.header.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -HH -f'%CHROM %POS[ %SAMPLE][ %DP][ %GT]'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%SAMPLE %DP\n]' -i'DP=1 || DP=2' /tmp/d5I7jei21M/query.filter-or.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/query.filter-or.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%SAMPLE %DP\n]' -i'DP=1 || DP=2'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%SAMPLE %DP\n]' -i'DP=1 |  DP=2' /tmp/d5I7jei21M/query.filter-or.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/query.filter-or.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%SAMPLE %DP\n]' -i'DP=1 |  DP=2'
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -c s /tmp/d5I7jei21M/norm.dup-end.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.dup-end.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -c s /tmp/d5I7jei21M/norm.dup-end.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.dup-end.fa -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -c s -N10 /tmp/d5I7jei21M/norm.dup-end.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.dup-end.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -c s -N10 /tmp/d5I7jei21M/norm.dup-end.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.dup-end.fa -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -c s -N /tmp/d5I7jei21M/norm.dup-end.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.dup-end.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -c s -N /tmp/d5I7jei21M/norm.dup-end.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.dup-end.fa -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -c s -N0 /tmp/d5I7jei21M/norm.dup-end.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.dup-end.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -c s -N0 /tmp/d5I7jei21M/norm.dup-end.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.dup-end.fa -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -c s -N3 /tmp/d5I7jei21M/norm.dup-end.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.dup-end.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -c s -N3 /tmp/d5I7jei21M/norm.dup-end.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.dup-end.fa -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -c s -e 'type~"other"' /tmp/d5I7jei21M/norm.dup-end.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.dup-end.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -c s -e 'type~"other"' /tmp/d5I7jei21M/norm.dup-end.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.dup-end.fa -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -c s /tmp/d5I7jei21M/norm.check-ref.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.check-ref.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -c s /tmp/d5I7jei21M/norm.check-ref.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.check-ref.fa -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m +both -i 'ID=@/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.filter.txt' /tmp/d5I7jei21M/norm.filter.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m +both -i 'ID=@/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.filter.txt' /tmp/d5I7jei21M/norm.filter.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m +both -i 'ALT!="C"' /tmp/d5I7jei21M/norm.filter.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m +both -i 'ALT!="C"' /tmp/d5I7jei21M/norm.filter.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -d both -i 'ID=@/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.filter.txt' /tmp/d5I7jei21M/norm.filter.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -d both -i 'ID=@/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.filter.txt' /tmp/d5I7jei21M/norm.filter.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -d both -i 'ALT!="C"' /tmp/d5I7jei21M/norm.filter.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -d both -i 'ALT!="C"' /tmp/d5I7jei21M/norm.filter.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -c e /tmp/d5I7jei21M/norm.6.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.2.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -c e /tmp/d5I7jei21M/norm.6.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.2.fa -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m - /tmp/d5I7jei21M/norm.breakend.1.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.breakend.1.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m - /tmp/d5I7jei21M/norm.breakend.1.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.breakend.1.fa -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m - /tmp/d5I7jei21M/norm.sort.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m - /tmp/d5I7jei21M/norm.sort.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m - -S lex /tmp/d5I7jei21M/norm.sort.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m - -S lex /tmp/d5I7jei21M/norm.sort.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m +both /tmp/d5I7jei21M/norm.join-missing-ploidy.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m +both /tmp/d5I7jei21M/norm.join-missing-ploidy.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m - --multi-overlaps . /tmp/d5I7jei21M/norm.split.5.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m - --multi-overlaps . /tmp/d5I7jei21M/norm.split.5.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version  /tmp/d5I7jei21M/norm.symbolic.3.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.symbolic.3.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version  /tmp/d5I7jei21M/norm.symbolic.3.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.symbolic.3.fa -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -cx /tmp/d5I7jei21M/norm.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -cx /tmp/d5I7jei21M/norm.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.fa -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m- /tmp/d5I7jei21M/norm.split.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m- /tmp/d5I7jei21M/norm.split.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m- -a /tmp/d5I7jei21M/norm.split.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m- -a /tmp/d5I7jei21M/norm.split.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m- /tmp/d5I7jei21M/norm.split.2.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m- /tmp/d5I7jei21M/norm.split.2.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m- --force /tmp/d5I7jei21M/norm.split.3.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m- --force /tmp/d5I7jei21M/norm.split.3.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m- /tmp/d5I7jei21M/norm.split.4.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m- /tmp/d5I7jei21M/norm.split.4.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m- --keep-sum AD /tmp/d5I7jei21M/norm.split.4.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m- --keep-sum AD /tmp/d5I7jei21M/norm.split.4.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m- /tmp/d5I7jei21M/norm.split.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m- /tmp/d5I7jei21M/norm.split.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.fa -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m+ /tmp/d5I7jei21M/norm.merge.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m+ /tmp/d5I7jei21M/norm.merge.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m+ /tmp/d5I7jei21M/norm.merge.2.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m+ /tmp/d5I7jei21M/norm.merge.2.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m+ /tmp/d5I7jei21M/norm.merge.3.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m+ /tmp/d5I7jei21M/norm.merge.3.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m+ -s /tmp/d5I7jei21M/norm.merge.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m+ -s /tmp/d5I7jei21M/norm.merge.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -N -c s /tmp/d5I7jei21M/norm.setref.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -N -c s /tmp/d5I7jei21M/norm.setref.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.fa -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version /tmp/d5I7jei21M/norm.telomere.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version /tmp/d5I7jei21M/norm.telomere.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.fa -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -d snps /tmp/d5I7jei21M/norm.rmdup.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -d snps /tmp/d5I7jei21M/norm.rmdup.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -d indels /tmp/d5I7jei21M/norm.rmdup.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -d indels /tmp/d5I7jei21M/norm.rmdup.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -d both /tmp/d5I7jei21M/norm.rmdup.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -d both /tmp/d5I7jei21M/norm.rmdup.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -d all /tmp/d5I7jei21M/norm.rmdup.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -d all /tmp/d5I7jei21M/norm.rmdup.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -d none /tmp/d5I7jei21M/norm.rmdup.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -d none /tmp/d5I7jei21M/norm.rmdup.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -d exact /tmp/d5I7jei21M/norm.rmdup.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -d exact /tmp/d5I7jei21M/norm.rmdup.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -d none /tmp/d5I7jei21M/norm.rmdup.2.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -d none /tmp/d5I7jei21M/norm.rmdup.2.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -d exact /tmp/d5I7jei21M/norm.rmdup.2.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -d exact /tmp/d5I7jei21M/norm.rmdup.2.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -d indels /tmp/d5I7jei21M/norm.rmdup.2.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -d indels /tmp/d5I7jei21M/norm.rmdup.2.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -d any /tmp/d5I7jei21M/norm.rmdup.2.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -d any /tmp/d5I7jei21M/norm.rmdup.2.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -d both /tmp/d5I7jei21M/norm.rmdup.2.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -d both /tmp/d5I7jei21M/norm.rmdup.2.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -d snps /tmp/d5I7jei21M/norm.rmdup.2.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -d snps /tmp/d5I7jei21M/norm.rmdup.2.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -d exact /tmp/d5I7jei21M/norm.rmdup.3.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.rmdup.3.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -d exact /tmp/d5I7jei21M/norm.rmdup.3.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.rmdup.3.fa -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -d all /tmp/d5I7jei21M/norm.rmdup.3.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.rmdup.3.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -d all /tmp/d5I7jei21M/norm.rmdup.3.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.rmdup.3.fa -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -c s -a --old-rec-tag XX /tmp/d5I7jei21M/norm.2.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.2.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -c s -a --old-rec-tag XX /tmp/d5I7jei21M/norm.2.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.2.fa -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -c s --old-rec-tag XX /tmp/d5I7jei21M/norm.iupac.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.iupac.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -c s --old-rec-tag XX /tmp/d5I7jei21M/norm.iupac.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.iupac.fa -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -c s --old-rec-tag XX /tmp/d5I7jei21M/norm.iupac.2.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.iupac.2.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -c s --old-rec-tag XX /tmp/d5I7jei21M/norm.iupac.2.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.iupac.2.fa -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -c s --old-rec-tag XX /tmp/d5I7jei21M/norm.3.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.3.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -c s --old-rec-tag XX /tmp/d5I7jei21M/norm.3.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.3.fa -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -c s -i'alt="N"' --old-rec-tag XX /tmp/d5I7jei21M/norm.3.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.3.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -c s -i'alt="N"' --old-rec-tag XX /tmp/d5I7jei21M/norm.3.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.3.fa -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -a --old-rec-tag OLD_REC /tmp/d5I7jei21M/atomize.split.1.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m -any --force
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -a --old-rec-tag OLD_REC /tmp/d5I7jei21M/atomize.split.1.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m -any --force -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m -any --old-rec-tag OLD_REC --force /tmp/d5I7jei21M/atomize.split.1.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -a
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m -any --old-rec-tag OLD_REC --force /tmp/d5I7jei21M/atomize.split.1.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -a -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m -any --old-rec-tag OLD_REC --force -a /tmp/d5I7jei21M/atomize.split.1.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m -any --old-rec-tag OLD_REC --force -a /tmp/d5I7jei21M/atomize.split.1.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version --atomize --atom-overlaps . --old-rec-tag OLD_REC /tmp/d5I7jei21M/atomize.split.1.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version --atomize --atom-overlaps . --old-rec-tag OLD_REC /tmp/d5I7jei21M/atomize.split.1.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version --atomize --old-rec-tag OLD_REC /tmp/d5I7jei21M/atomize.split.1.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version --atomize --old-rec-tag OLD_REC /tmp/d5I7jei21M/atomize.split.1.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version --atomize --old-rec-tag OLD_REC /tmp/d5I7jei21M/atomize.split.2.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version --atomize --old-rec-tag OLD_REC /tmp/d5I7jei21M/atomize.split.2.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version --atomize --atom-overlaps . --old-rec-tag OLD_REC /tmp/d5I7jei21M/atomize.split.2.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version --atomize --atom-overlaps . --old-rec-tag OLD_REC /tmp/d5I7jei21M/atomize.split.2.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version --atomize --atom-overlaps . /tmp/d5I7jei21M/atomize.split.3.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version --atomize --atom-overlaps . /tmp/d5I7jei21M/atomize.split.3.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version --atomize --atom-overlaps . --old-rec-tag OLD_REC /tmp/d5I7jei21M/atomize.split.4.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version --atomize --atom-overlaps . --old-rec-tag OLD_REC /tmp/d5I7jei21M/atomize.split.4.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version --atomize --atom-overlaps . --old-rec-tag OLD_REC -i 'ILEN=0' /tmp/d5I7jei21M/atomize.split.4.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version --atomize --atom-overlaps . --old-rec-tag OLD_REC -i 'ILEN=0' /tmp/d5I7jei21M/atomize.split.4.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version --atomize --old-rec-tag OLD_REC --atom-overlaps . /tmp/d5I7jei21M/atomize.split.5.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version --atomize --old-rec-tag OLD_REC --atom-overlaps . /tmp/d5I7jei21M/atomize.split.5.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version --atomize --old-rec-tag OLD_REC /tmp/d5I7jei21M/atomize.split.5.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version --atomize --old-rec-tag OLD_REC /tmp/d5I7jei21M/atomize.split.5.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m +both /tmp/d5I7jei21M/norm.4.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m +both /tmp/d5I7jei21M/norm.4.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m +any /tmp/d5I7jei21M/norm.4.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m +any /tmp/d5I7jei21M/norm.4.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m - --multi-overlaps 0 /tmp/d5I7jei21M/norm.5.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m - --multi-overlaps 0 /tmp/d5I7jei21M/norm.5.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m - --multi-overlaps . /tmp/d5I7jei21M/norm.5.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m - --multi-overlaps . /tmp/d5I7jei21M/norm.5.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m -any /tmp/d5I7jei21M/norm.m-any.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m -any /tmp/d5I7jei21M/norm.m-any.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m -any /tmp/d5I7jei21M/norm.phased-split.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m -any /tmp/d5I7jei21M/norm.phased-split.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m +any /tmp/d5I7jei21M/norm.phased-join.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m +any /tmp/d5I7jei21M/norm.phased-join.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version --old-rec-tag ORI /tmp/d5I7jei21M/norm.symbolic.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.symbolic.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version --old-rec-tag ORI /tmp/d5I7jei21M/norm.symbolic.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.symbolic.fa -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version --old-rec-tag ORI /tmp/d5I7jei21M/norm.symbolic.2.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.symbolic.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version --old-rec-tag ORI /tmp/d5I7jei21M/norm.symbolic.2.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.symbolic.fa -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version --old-rec-tag ORI /tmp/d5I7jei21M/norm.right-align.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.right-align.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version --old-rec-tag ORI /tmp/d5I7jei21M/norm.right-align.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.right-align.fa -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version --old-rec-tag ORI -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.right-align.gff /tmp/d5I7jei21M/norm.right-align.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.right-align.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version --old-rec-tag ORI -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.right-align.gff /tmp/d5I7jei21M/norm.right-align.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.right-align.fa -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version --old-rec-tag ORI -a -m -any /tmp/d5I7jei21M/norm.atom-split-norm.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.atom-split-norm.fa
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version --old-rec-tag ORI -a -m -any /tmp/d5I7jei21M/norm.atom-split-norm.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.atom-split-norm.fa -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m -any /tmp/d5I7jei21M/norm.string-tags.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m -any /tmp/d5I7jei21M/norm.string-tags.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m - /tmp/d5I7jei21M/norm.split.merge.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m +both
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m - /tmp/d5I7jei21M/norm.split.merge.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m +both -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m - /tmp/d5I7jei21M/norm.split.merge.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m +indels
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m - /tmp/d5I7jei21M/norm.split.merge.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m +indels -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m - /tmp/d5I7jei21M/norm.split.merge.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m +snps
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m - /tmp/d5I7jei21M/norm.split.merge.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m +snps -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m - /tmp/d5I7jei21M/norm.split.merge.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m +snps
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m - /tmp/d5I7jei21M/norm.split.merge.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m +snps -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m - /tmp/d5I7jei21M/norm.split.merge.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m +any
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m - /tmp/d5I7jei21M/norm.split.merge.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m +any -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m - -i 'type="snp"' /tmp/d5I7jei21M/norm.split.merge.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m - -i 'type="snp"' /tmp/d5I7jei21M/norm.split.merge.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m +any /tmp/d5I7jei21M/norm.merge.4.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m +any /tmp/d5I7jei21M/norm.merge.4.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m +both /tmp/d5I7jei21M/norm.merge.4.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools norm --no-version -m +both /tmp/d5I7jei21M/norm.merge.4.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -Hv ref /tmp/d5I7jei21M/view.types.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -Hv snps /tmp/d5I7jei21M/view.types.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -Hv mnps /tmp/d5I7jei21M/view.types.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -Hv indels /tmp/d5I7jei21M/view.types.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -Hv other /tmp/d5I7jei21M/view.types.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -Hv bnd /tmp/d5I7jei21M/view.types.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -Hv overlap /tmp/d5I7jei21M/view.types.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -Hi 'MAC>=2' /tmp/d5I7jei21M/filter.mac.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -Hi 'MAF>=0.09' /tmp/d5I7jei21M/filter.mac.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -Hi 'MAF*AN>=2' /tmp/d5I7jei21M/filter.mac.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -i 'INFO/TAG=@/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.string.1.txt' /tmp/d5I7jei21M/filter.string.1.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob -i 'INFO/TAG=@/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.string.1.txt' /tmp/d5I7jei21M/filter.string.1.vcf.gz  | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -i 'FMT/TAG=@/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.string.1.txt' /tmp/d5I7jei21M/filter.string.1.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob -i 'FMT/TAG=@/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.string.1.txt' /tmp/d5I7jei21M/filter.string.1.vcf.gz  | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -HA /tmp/d5I7jei21M/merge.gvcf.2.a.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -HAA /tmp/d5I7jei21M/merge.gvcf.2.a.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version  /tmp/d5I7jei21M/weird-chr-names.vcf.gz -r 1
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob  /tmp/d5I7jei21M/weird-chr-names.vcf.gz -r 1 | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version  /tmp/d5I7jei21M/weird-chr-names.vcf.gz -r 1:1-2
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob  /tmp/d5I7jei21M/weird-chr-names.vcf.gz -r 1:1-2 | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version  /tmp/d5I7jei21M/weird-chr-names.vcf.gz -r 1:1,1:2
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob  /tmp/d5I7jei21M/weird-chr-names.vcf.gz -r 1:1,1:2 | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version  /tmp/d5I7jei21M/weird-chr-names.vcf.gz -r 1:1-1
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob  /tmp/d5I7jei21M/weird-chr-names.vcf.gz -r 1:1-1 | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version  /tmp/d5I7jei21M/weird-chr-names.vcf.gz -r {1:1}
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob  /tmp/d5I7jei21M/weird-chr-names.vcf.gz -r {1:1} | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version  /tmp/d5I7jei21M/weird-chr-names.vcf.gz -r {1:1}:1-2
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob  /tmp/d5I7jei21M/weird-chr-names.vcf.gz -r {1:1}:1-2 | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version  /tmp/d5I7jei21M/weird-chr-names.vcf.gz -r {1:1}:1,{1:1}:2
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob  /tmp/d5I7jei21M/weird-chr-names.vcf.gz -r {1:1}:1,{1:1}:2 | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version  /tmp/d5I7jei21M/weird-chr-names.vcf.gz -r {1:1}:1-1
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob  /tmp/d5I7jei21M/weird-chr-names.vcf.gz -r {1:1}:1-1 | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version  /tmp/d5I7jei21M/weird-chr-names.vcf.gz -r {1:1-1}
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob  /tmp/d5I7jei21M/weird-chr-names.vcf.gz -r {1:1-1} | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version  /tmp/d5I7jei21M/weird-chr-names.vcf.gz -r {1:1-1}:1-2
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob  /tmp/d5I7jei21M/weird-chr-names.vcf.gz -r {1:1-1}:1-2 | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version  /tmp/d5I7jei21M/weird-chr-names.vcf.gz -r {1:1-1}:1,{1:1-1}:2
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob  /tmp/d5I7jei21M/weird-chr-names.vcf.gz -r {1:1-1}:1,{1:1-1}:2 | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version  /tmp/d5I7jei21M/weird-chr-names.vcf.gz -r {1:1-1}:1-1
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob  /tmp/d5I7jei21M/weird-chr-names.vcf.gz -r {1:1-1}:1-1 | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version  /tmp/d5I7jei21M/weird-chr-names.vcf.gz -r {1:1-1}-2
.. ok, expected non-zero status

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob  /tmp/d5I7jei21M/weird-chr-names.vcf.gz -r {1:1-1}-2 | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok, expected non-zero status

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -aUc1 -C1 -s NA00002 -v snps /tmp/d5I7jei21M/view.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob -aUc1 -C1 -s NA00002 -v snps /tmp/d5I7jei21M/view.vcf.gz  | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -f PASS -Xks NA00003 /tmp/d5I7jei21M/view.vcf.gz -r20,Y
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob -f PASS -Xks NA00003 /tmp/d5I7jei21M/view.vcf.gz -r20,Y | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -xs NA00003 /tmp/d5I7jei21M/view.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob -xs NA00003 /tmp/d5I7jei21M/view.vcf.gz  | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -i 'QUAL==999 && (FS<20 || FS>=41.02) && ICF>-0.1 && HWE*2>1.2' /tmp/d5I7jei21M/view.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob -i 'QUAL==999 && (FS<20 || FS>=41.02) && ICF>-0.1 && HWE*2>1.2' /tmp/d5I7jei21M/view.vcf.gz  | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -p /tmp/d5I7jei21M/view.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob -p /tmp/d5I7jei21M/view.vcf.gz  | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -P /tmp/d5I7jei21M/view.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob -P /tmp/d5I7jei21M/view.vcf.gz  | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -hm2 -M2 -q0.3 -Q0.7 /tmp/d5I7jei21M/view.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob -hm2 -M2 -q0.3 -Q0.7 /tmp/d5I7jei21M/view.vcf.gz  | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -Hu /tmp/d5I7jei21M/view.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -GVsnps /tmp/d5I7jei21M/view.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob -GVsnps /tmp/d5I7jei21M/view.vcf.gz  | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -ne 'INDEL=1 || PV4[0]<0.006' /tmp/d5I7jei21M/view.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob -ne 'INDEL=1 || PV4[0]<0.006' /tmp/d5I7jei21M/view.vcf.gz  | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -s ^NA00003 /tmp/d5I7jei21M/view.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob -s ^NA00003 /tmp/d5I7jei21M/view.vcf.gz  | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version  /tmp/d5I7jei21M/view.omitgenotypes.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob  /tmp/d5I7jei21M/view.omitgenotypes.vcf.gz  | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -G /tmp/d5I7jei21M/view.omitgenotypes.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob -G /tmp/d5I7jei21M/view.omitgenotypes.vcf.gz  | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -HG /tmp/d5I7jei21M/view.omitgenotypes.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -a /tmp/d5I7jei21M/many.alleles.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob -a /tmp/d5I7jei21M/many.alleles.vcf.gz  | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -asA /tmp/d5I7jei21M/view.vectors.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob -asA /tmp/d5I7jei21M/view.vectors.vcf.gz  | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -asB /tmp/d5I7jei21M/view.vectors.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob -asB /tmp/d5I7jei21M/view.vectors.vcf.gz  | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -asA /tmp/d5I7jei21M/view.vectors.2.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob -asA /tmp/d5I7jei21M/view.vectors.2.vcf.gz  | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -H -i'FMT/FGS[*:0]="AAAAAA"' /tmp/d5I7jei21M/view.filter.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -H -i'FMT/FGS[*:2]="C"' /tmp/d5I7jei21M/view.filter.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -H -i'FMT/FGS[*:4]="EE"' /tmp/d5I7jei21M/view.filter.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -H -i'FMT/FRS[*:1]="BB"' /tmp/d5I7jei21M/view.filter.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -H -i'TXT0="text"' /tmp/d5I7jei21M/view.filter.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -T /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/view.chrs.tab /tmp/d5I7jei21M/view.chrs.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob -T /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/view.chrs.tab /tmp/d5I7jei21M/view.chrs.vcf.gz  | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -i 'POS>=3062917' /tmp/d5I7jei21M/filter.2.vcf.gz 1:3062917-3157410
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob -i 'POS>=3062917' /tmp/d5I7jei21M/filter.2.vcf.gz 1:3062917-3157410 | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -H -r 1:10,1:12,1:10 /tmp/d5I7jei21M/idx.1.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -H -r 1:1172777-1172804,1:1172806-1172808 /tmp/d5I7jei21M/idx.2.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -H -R /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/idx.2.bed /tmp/d5I7jei21M/idx.2.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -H -R /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/idx.3.bed /tmp/d5I7jei21M/idx.3.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -H -R /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/idx.4.bed /tmp/d5I7jei21M/idx.4.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -Ht 2 /tmp/d5I7jei21M/view-t.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -Ht 3 /tmp/d5I7jei21M/view-t.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -H -r chr1:100-200 --regions-overlap 0 /tmp/d5I7jei21M/overlap.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -H -r chr1:100-200 --regions-overlap 1 /tmp/d5I7jei21M/overlap.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -H -r chr1:100-200 --regions-overlap 2 /tmp/d5I7jei21M/overlap.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -H -t chr1:100-200 --targets-overlap 0 /tmp/d5I7jei21M/overlap.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -H -t chr1:100-200 --targets-overlap 1 /tmp/d5I7jei21M/overlap.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -H -t chr1:100-200 --targets-overlap 2 /tmp/d5I7jei21M/overlap.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -H -t ^chr1:100-200 --targets-overlap 0 /tmp/d5I7jei21M/overlap.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -H -t ^chr1:100-200 --targets-overlap 1 /tmp/d5I7jei21M/overlap.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -H -t ^chr1:100-200 --targets-overlap 2 /tmp/d5I7jei21M/overlap.vcf.gz 
.. ok

test_vcf_64bit:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/view64bit.1.vcf -H
.. ok

test_vcf_64bit:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/view64bit.1.vcf     | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -H
.. ok

test_vcf_64bit:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/view64bit.1.vcf -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -H
.. ok

test_vcf_64bit:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/view64bit.2.vcf -H
.. ok

test_vcf_64bit:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/view64bit.2.vcf     | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -H
.. ok

test_vcf_64bit:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/view64bit.2.vcf -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -H
.. ok

test_vcf_64bit:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/view64bit.3.vcf -H
.. ok

test_vcf_64bit:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/view64bit.3.vcf     | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -H
.. ok

test_vcf_64bit:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/view64bit.4.vcf -H
.. ok

test_vcf_64bit:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/view64bit.4.vcf     | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -H
.. ok

test_vcf_64bit:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/view64bit.4.vcf -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -H
.. ok

test_vcf_64bit:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/view64bit.5.vcf -H
.. ok

test_vcf_64bit:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/view64bit.5.vcf     | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -H
.. ok

test_vcf_64bit:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/view64bit.5.vcf -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -H
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -H -C5:nonmajor /tmp/d5I7jei21M/view.minmaxac.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -H -c6:nonmajor /tmp/d5I7jei21M/view.minmaxac.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -H -q0.3:major /tmp/d5I7jei21M/view.minmaxac.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -H -i 'Gene.refGene=="RAD21L1"' /tmp/d5I7jei21M/view.filter.annovar.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -H -i 'Gene.refGene~"NOD"' /tmp/d5I7jei21M/view.filter.annovar.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -H -i 'LJB2_MutationTaster=="0.291000"' /tmp/d5I7jei21M/view.filter.annovar.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -H -a /tmp/d5I7jei21M/view-a.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -T /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/view.sites.txt /tmp/d5I7jei21M/view.sites.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob -T /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/view.sites.txt /tmp/d5I7jei21M/view.sites.vcf.gz  | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -T /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/view.sites.txt.gz /tmp/d5I7jei21M/view.sites.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob -T /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/view.sites.txt.gz /tmp/d5I7jei21M/view.sites.vcf.gz  | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_head:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools head /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.2.vcf
.. ok

test_vcf_head:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools head -h 0 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.2.vcf
.. ok

test_vcf_head:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools head -h 1 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.2.vcf
.. ok

test_vcf_head:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools head -h 5 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.2.vcf
.. ok

test_vcf_head:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools head -h 22 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.2.vcf
.. ok

test_vcf_head:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools head -h 23 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.2.vcf
.. ok

test_vcf_head:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools head -n 0 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.2.vcf
.. ok

test_vcf_head:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools head -n 1 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.2.vcf
.. ok

test_vcf_head:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools head -n 5 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.2.vcf
.. ok

test_vcf_head:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools head -h 5 -n 5 < /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.2.vcf
.. ok

test_vcf_head2:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools head -s0 /tmp/d5I7jei21M/mpileup.2.vcf.gz
.. ok

test_vcf_head2:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -Ob /tmp/d5I7jei21M/mpileup.2.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools head -s0
.. ok

test_vcf_head2:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools head -s1 /tmp/d5I7jei21M/mpileup.2.vcf.gz
.. ok

test_vcf_head2:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -Ob /tmp/d5I7jei21M/mpileup.2.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools head -s1
.. ok

test_vcf_head2:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools head -s2 -h2 /tmp/d5I7jei21M/mpileup.2.vcf.gz
.. ok

test_vcf_head2:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version -Ob /tmp/d5I7jei21M/mpileup.2.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools head -s2 -h2
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call --no-version -m -s sample1 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/samples.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call -Ob -m -s sample1 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/samples.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call --no-version -m -s ^sample2,sample3 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/samples.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call -Ob -m -s ^sample2,sample3 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/samples.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call --no-version -m -s sample3 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/samples.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call -Ob -m -s sample3 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/samples.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call --no-version -m -s ^sample1,sample2 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/samples.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call -Ob -m -s ^sample1,sample2 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/samples.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call --no-version -m --ploidy-file /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/call-ploidy.1.txt -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/call-ploidy.1.ped /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/call-ploidy.1.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call -Ob -m --ploidy-file /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/call-ploidy.1.txt -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/call-ploidy.1.ped /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/call-ploidy.1.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call --no-version -mv /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call -Ob -mv /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call --no-version -mg0 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call -Ob -mg0 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call --no-version -mv -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.3.samples /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call -Ob -mv -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.3.samples /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call --no-version -mv -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.4.samples /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call -Ob -mv -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.4.samples /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call --no-version -mv -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.5.samples /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call -Ob -mv -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.5.samples /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call --no-version -mv --ploidy-file /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.ploidy -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.samples /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.X.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call -Ob -mv --ploidy-file /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.ploidy -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.samples /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.X.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call --no-version -mv --ploidy-file /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.ploidy -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.ped /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.X.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call -Ob -mv --ploidy-file /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.ploidy -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.ped /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.X.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call --no-version -mv --ploidy-file /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.ploidy -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.2.samples /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.X.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call -Ob -mv --ploidy-file /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.ploidy -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.2.samples /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.X.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call --no-version -mv /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.NA19213.NA19129.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call -Ob -mv /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.NA19213.NA19129.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call --no-version -mv -G - --group-samples-tag AD /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.NA19213.NA19129.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call -Ob -mv -G - --group-samples-tag AD /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.NA19213.NA19129.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call --no-version -mv /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.hwe.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call -Ob -mv /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.hwe.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call --no-version -mv -G - --group-samples-tag AD /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.hwe.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call -Ob -mv -G - --group-samples-tag AD /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.hwe.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call --no-version -mv -G /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.hwe.samples --group-samples-tag AD /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.hwe.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call -Ob -mv -G /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.hwe.samples --group-samples-tag AD /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.hwe.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call --no-version -mA -C alleles -T /tmp/d5I7jei21M/mpileup.tab.gz  /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.vcf
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call -Ob -mA -C alleles -T /tmp/d5I7jei21M/mpileup.tab.gz  /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call --no-version -mA -C alleles -T /tmp/d5I7jei21M/mpileup.2.tab.gz  /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.2.vcf
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call -Ob -mA -C alleles -T /tmp/d5I7jei21M/mpileup.2.tab.gz  /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call --no-version -mA -C alleles -T /tmp/d5I7jei21M/mpileup.3.tab.gz -i /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.3.vcf
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call -Ob -mA -C alleles -T /tmp/d5I7jei21M/mpileup.3.tab.gz -i /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.3.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call --no-version -mA -C alleles -T /tmp/d5I7jei21M/mpileup.4.tab.gz -i /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.3.vcf
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call -Ob -mA -C alleles -T /tmp/d5I7jei21M/mpileup.4.tab.gz -i /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.3.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call --no-version -mA -C alleles -T /tmp/d5I7jei21M/mpileup.5.tab.gz -i /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.3.vcf
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call -Ob -mA -C alleles -T /tmp/d5I7jei21M/mpileup.5.tab.gz -i /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.3.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call --no-version -mA -C alleles -T /tmp/d5I7jei21M/mpileup.6.tab.gz -i /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.4.vcf
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call -Ob -mA -C alleles -T /tmp/d5I7jei21M/mpileup.6.tab.gz -i /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.4.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call --no-version -mA -C alleles -T /tmp/d5I7jei21M/mpileup.7.tab.gz -i /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.5.vcf
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call -Ob -mA -C alleles -T /tmp/d5I7jei21M/mpileup.7.tab.gz -i /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.5.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call --no-version -mA -C alleles -T /tmp/d5I7jei21M/mpileup.cals.1.tab.gz  /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.cals.1.vcf
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call -Ob -mA -C alleles -T /tmp/d5I7jei21M/mpileup.cals.1.tab.gz  /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.cals.1.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call --no-version -mA -C alleles -T /tmp/d5I7jei21M/mpileup.cals.2.tab.gz  /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.cals.2.vcf
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call -Ob -mA -C alleles -T /tmp/d5I7jei21M/mpileup.cals.2.tab.gz  /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.cals.2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call --no-version -cv /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.c.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call -Ob -cv /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.c.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call --no-version -cv --ploidy-file /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.ploidy -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.samples /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.c.X.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call -Ob -cv --ploidy-file /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.ploidy -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.samples /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.c.X.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call --no-version -cv --ploidy-file /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.ploidy -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.ped /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.c.X.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call -Ob -cv --ploidy-file /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.ploidy -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.ped /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.c.X.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call --no-version -cv --ploidy-file /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.ploidy -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.2.samples /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.c.X.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call -Ob -cv --ploidy-file /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.ploidy -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.2.samples /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup.c.X.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call --no-version -mv /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/call-G.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call -Ob -mv /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/call-G.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call --no-version -mv -G - --group-samples-tag AD /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/call-G.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call -Ob -mv -G - --group-samples-tag AD /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/call-G.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call --no-version -mv -F AN_POP,AC_POP /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/call-G.2.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call -Ob -mv -F AN_POP,AC_POP /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/call-G.2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call --no-version -m /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/call.af-fixation.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call -Ob -m /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/call.af-fixation.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call --no-version -m -G /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/call.af-fixation.txt /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/call.af-fixation.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call -Ob -m -G /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/call.af-fixation.txt /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/call.af-fixation.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call --no-version -m -G /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/call.af-fixation.txt -a GP,GQ /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/call.af-fixation.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools call -Ob -m -G /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/call.af-fixation.txt -a GP,GQ /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/call.af-fixation.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -S. -e'TXT0="text"' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/view.filter.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -S. -e'TXT0="text"' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/view.filter.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -S. -e'FMT/FRS[*:1]="BB"' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/view.filter.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -S. -e'FMT/FRS[*:1]="BB"' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/view.filter.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -S. -e'FMT/FGS[*:0]="AAAAAA"' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/view.filter.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -S. -e'FMT/FGS[*:0]="AAAAAA"' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/view.filter.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -S. -e'FMT/FGS[*:1]="BBB"' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/view.filter.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -S. -e'FMT/FGS[*:1]="BBB"' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/view.filter.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -S. -e'FMT/FGS[*:4]="EE"' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/view.filter.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -S. -e'FMT/FGS[*:4]="EE"' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/view.filter.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -S. -e'FMT/STR="XX"' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/view.filter.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -S. -e'FMT/STR="XX"' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/view.filter.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -S. -e'FMT/FILTER="aaa"' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/view.filter.2.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -S. -e'FMT/FILTER="aaa"' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/view.filter.2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -mx -g2 -G2 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.1.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -mx -g2 -G2 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.1.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -e'QUAL==59.2 || (INDEL=0 & (FMT/GQ=25 | FMT/DP=10))' -sModified -S. /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.2.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -e'QUAL==59.2 || (INDEL=0 & (FMT/GQ=25 | FMT/DP=10))' -sModified -S. /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -e'INFO/DP=19' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -e'INFO/DP=19' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -e'INFO/DP=19' -s XX /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -e'INFO/DP=19' -s XX /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -e'INFO/DP=19' -s XX -m+ /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -e'INFO/DP=19' -s XX -m+ /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -e'INFO/DP=19' -s XX -mx /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -e'INFO/DP=19' -s XX -mx /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -e'INFO/DP=19' -s XX -m+x /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -e'INFO/DP=19' -s XX -m+x /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -e'FMT/GT="0/2"' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -e'FMT/GT="0/2"' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -e'FMT/GT="0/2"' -s XX /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -e'FMT/GT="0/2"' -s XX /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -e'FMT/GT="0/2"' -s XX -m+ /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -e'FMT/GT="0/2"' -s XX -m+ /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -e'FMT/GT="0/2"' -s XX -mx /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -e'FMT/GT="0/2"' -s XX -mx /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -e'FMT/GT="0/2"' -s XX -m+x /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -e'FMT/GT="0/2"' -s XX -m+x /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -i'FMT/GT="0/0" && AC[*]=2' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS\t%AC[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -i'FMT/GT="0/0" && AC[*]=2' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS\t%AC[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -i'AC[*]=2 && FMT/GT="0/0"' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS\t%AC[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -i'AC[*]=2 && FMT/GT="0/0"' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS\t%AC[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -i'ALT="."' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS\t%AC[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -i'ALT="."' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS\t%AC[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -S . -i 'FORMAT/TEST3<25' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.4.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -S . -i 'FORMAT/TEST3<25' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.4.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -S . -i 'FORMAT/TEST4<25' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.4.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -S . -i 'FORMAT/TEST4<25' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.4.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -i'GT="A"' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -i'GT="A"' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -i'GT="RR"' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -i'GT="RR"' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -i'GT="RA"' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -i'GT="RA"' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -i'GT="AR"' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -i'GT="AR"' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -i'GT="AA"' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -i'GT="AA"' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -i'GT="aA"' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -i'GT="aA"' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -i'GT="Aa"' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -i'GT="Aa"' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -i'GT="HOM"' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -i'GT="HOM"' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -i'GT="HET"' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -i'GT="HET"' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -i'GT="HAP"' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -i'GT="HAP"' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -i'AD[:1]=11' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.5.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS[\t%AD]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -i'AD[:1]=11' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.5.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS[\t%AD]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -i'AD[1:]=11' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.5.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS[\t%AD]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -i'AD[1:]=11' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.5.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS[\t%AD]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -i'FR[0:1]=11' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.5.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS[\t%FR]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -i'FR[0:1]=11' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.5.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS[\t%FR]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -i'AD[*]="."' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.5.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS[\t%AD]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -i'AD[*]="."' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.5.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS[\t%AD]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -i'AD[0:0]=="."' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.5.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS[\t%AD]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -i'AD[0:0]=="."' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.5.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS[\t%AD]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -i'AD[0:0]!="."' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.5.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS[\t%AD]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -i'AD[0:0]!="."' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.5.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS[\t%AD]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -i'QUAL=="."' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.5.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS\t%QUAL\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -i'QUAL=="."' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.5.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS\t%QUAL\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -i'N_PASS(DP>32)=1' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '[%POS\t%SAMPLE\t%DP\n]'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -i'N_PASS(DP>32)=1' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '[%POS\t%SAMPLE\t%DP\n]'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -i'F_PASS(DP>32)=0.5' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '[%POS\t%SAMPLE\t%DP\n]'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -i'F_PASS(DP>32)=0.5' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '[%POS\t%SAMPLE\t%DP\n]'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -i'F_MISSING>=1/5' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.6.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -i'F_MISSING>=1/5' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.6.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -i'F_MISSING>=0.2' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.6.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -i'F_MISSING>=0.2' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.6.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -i'F_PASS(GT=="mis")>=1/5' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.6.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -i'F_PASS(GT=="mis")>=1/5' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.6.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -i'F_PASS(GT=="mis")>=0.2' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.6.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -i'F_PASS(GT=="mis")>=0.2' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.6.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%POS\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -mx -s + -g2:mnp,indel,other /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.7.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -mx -s + -g2:mnp,indel,other /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.7.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -S . -e 'FORMAT/AO==4' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -S . -e 'FORMAT/AO==4' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -S . -e 'MAX(FORMAT/AO[0:])==4' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -S . -e 'MAX(FORMAT/AO[0:])==4' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -S . -e 'MAX(FORMAT/AO)==4' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -S . -e 'MAX(FORMAT/AO)==4' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -S . -e 'MIN(FORMAT/AO[0:])==3' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -S . -e 'MIN(FORMAT/AO[0:])==3' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -S . -e 'MIN(FORMAT/AO)==2' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -S . -e 'MIN(FORMAT/AO)==2' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -S . -e 'MIN(FORMAT/AO[0:])==3' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -S . -e 'MIN(FORMAT/AO[0:])==3' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -S . -e 'AVG(FORMAT/AO[2:])==4' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -S . -e 'AVG(FORMAT/AO[2:])==4' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -S . -e 'MEDIAN(FORMAT/AO[2:])==4' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -S . -e 'MEDIAN(FORMAT/AO[2:])==4' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -S . -e 'STDEV(FORMAT/AO[0:])=0.5' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -S . -e 'STDEV(FORMAT/AO[0:])=0.5' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -S . -e 'SUM(FORMAT/AO[0:])=7' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -S . -e 'SUM(FORMAT/AO[0:])=7' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -S . -e 'SMPL_MAX(FORMAT/AO)==4' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -S . -e 'SMPL_MAX(FORMAT/AO)==4' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -S . -e 'sMIN(FORMAT/AO)==2' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -S . -e 'sMIN(FORMAT/AO)==2' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -S . -e 'ABS(sAVG(FORMAT/AO)-3.66666)<1e-5' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -S . -e 'ABS(sAVG(FORMAT/AO)-3.66666)<1e-5' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -S . -e 'sMEDIAN(FORMAT/AO)==4' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -S . -e 'sMEDIAN(FORMAT/AO)==4' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -S . -e 'ABS(sSTDEV(FORMAT/AO)-1.2472191)<1e-5' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -S . -e 'ABS(sSTDEV(FORMAT/AO)-1.2472191)<1e-5' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -S . -e 'sSUM(FORMAT/AO)==11' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -S . -e 'sSUM(FORMAT/AO)==11' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -i 'QUAL/FMT/AD==55' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.9.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -i 'QUAL/FMT/AD==55' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.9.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -i 'QUAL/INFO/AD==10' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.9.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -i 'QUAL/INFO/AD==10' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.9.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -S . -e 'ABS(SMPL_MAX(FORMAT/AO))=5' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -S . -e 'ABS(SMPL_MAX(FORMAT/AO))=5' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -S . -e 'PHRED(AO[1:])>-4' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -S . -e 'PHRED(AO[1:])>-4' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -S . -e 'ABS(AO[1:])==2' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -S . -e 'ABS(AO[1:])==2' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -i 'sum(AD[*]) > FORMAT/DP' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.10.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -i 'sum(AD[*]) > FORMAT/DP' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.10.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -i 'FORMAT/DP < sum(AD[*])' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.10.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -i 'FORMAT/DP < sum(AD[*])' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.10.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -i 'sum(AD[*]) < FORMAT/DP' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.10.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -i 'sum(AD[*]) < FORMAT/DP' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.10.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -i 'FORMAT/DP > sum(AD[*])' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.10.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob -i 'FORMAT/DP > sum(AD[*])' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.10.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter --soft-filter xxx --mask 2:1005-1008 --mask-overlap 0 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.1.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob --soft-filter xxx --mask 2:1005-1008 --mask-overlap 0 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.1.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter --soft-filter xxx --mask 2:1005-1008 --mask-overlap 1 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.1.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob --soft-filter xxx --mask 2:1005-1008 --mask-overlap 1 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.1.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter --soft-filter xxx --mask 2:1005-1008 --mask-overlap 2 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.1.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob --soft-filter xxx --mask 2:1005-1008 --mask-overlap 2 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.1.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter --soft-filter xxx --mask ^2:1005-1008 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.1.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools filter -Ob --soft-filter xxx --mask ^2:1005-1008 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/filter.1.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_sort:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools sort -m 0 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/sort.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%CHROM\t%POS\t%REF,%ALT\n'
.. ok

test_vcf_sort:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools sort -Ob -m 0 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/sort.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%CHROM\t%POS\t%REF,%ALT\n'
.. ok

test_vcf_sort:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools sort -m 1000 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/sort.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%CHROM\t%POS\t%REF,%ALT\n'
.. ok

test_vcf_sort:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools sort -Ob -m 1000 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/sort.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f '%CHROM\t%POS\t%REF,%ALT\n'
.. ok

test_vcf_regions:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%CHROM %POS %REF,%ALT\n' -T /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/regions.tab /tmp/d5I7jei21M/regions.vcf.gz
.. ok

test_vcf_regions:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/regions.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%CHROM %POS %REF,%ALT\n' -T /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/regions.tab
.. ok

test_vcf_regions:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%CHROM %POS %REF,%ALT\n' -R /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/regions.tab /tmp/d5I7jei21M/regions.vcf.gz
.. ok

test_vcf_regions:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%CHROM %POS %REF,%ALT\n' -T /tmp/d5I7jei21M/regions.tab.gz /tmp/d5I7jei21M/regions.vcf.gz
.. ok

test_vcf_regions:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/regions.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%CHROM %POS %REF,%ALT\n' -T /tmp/d5I7jei21M/regions.tab.gz
.. ok

test_vcf_regions:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%CHROM %POS %REF,%ALT\n' -R /tmp/d5I7jei21M/regions.tab.gz /tmp/d5I7jei21M/regions.vcf.gz
.. ok

test_vcf_regions:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%CHROM %POS %REF,%ALT\n' -T /tmp/d5I7jei21M/regions.bed /tmp/d5I7jei21M/regions.vcf.gz
.. ok

test_vcf_regions:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/regions.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%CHROM %POS %REF,%ALT\n' -T /tmp/d5I7jei21M/regions.bed
.. ok

test_vcf_regions:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%CHROM %POS %REF,%ALT\n' -R /tmp/d5I7jei21M/regions.bed /tmp/d5I7jei21M/regions.vcf.gz
.. ok

test_vcf_regions:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%CHROM %POS %REF,%ALT\n' -T /tmp/d5I7jei21M/regions.bed.gz /tmp/d5I7jei21M/regions.vcf.gz
.. ok

test_vcf_regions:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/regions.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%CHROM %POS %REF,%ALT\n' -T /tmp/d5I7jei21M/regions.bed.gz
.. ok

test_vcf_regions:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%CHROM %POS %REF,%ALT\n' -R /tmp/d5I7jei21M/regions.bed.gz /tmp/d5I7jei21M/regions.vcf.gz
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/d5I7jei21M/annotate.pipes.tab.gz  -c CHROM,POS,REF,ALT,SRC,FF,II /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.pipes.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/d5I7jei21M/annotate.pipes.tab.gz  -c CHROM,POS,REF,ALT,SRC,FF,II /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.pipes.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/d5I7jei21M/annotate.pipes.tab.gz  -c CHROM,POS,REF,ALT,SRC,FF,II -k -i 'SRC={SRC}' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.pipes.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/d5I7jei21M/annotate.pipes.tab.gz  -c CHROM,POS,REF,ALT,SRC,FF,II -k -i 'SRC={SRC}' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.pipes.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/d5I7jei21M/annotate.AR.tab.gz  -c CHROM,POS,REF,ALT,+INFO/IA,+INFO/FA,+INFO/IR,+INFO/FR /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.AR.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/d5I7jei21M/annotate.AR.tab.gz  -c CHROM,POS,REF,ALT,+INFO/IA,+INFO/FA,+INFO/IR,+INFO/FR /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.AR.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/d5I7jei21M/annotate.AR.tab.gz  -c CHROM,POS,REF,ALT,INFO/IA,INFO/FA,INFO/IR,INFO/FR /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.AR.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/d5I7jei21M/annotate.AR.tab.gz  -c CHROM,POS,REF,ALT,INFO/IA,INFO/FA,INFO/IR,INFO/FR /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.AR.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/d5I7jei21M/annotate.int.src.vcf.gz  -c +INFO/IA,+INFO/IR /tmp/d5I7jei21M/annotate.int.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/d5I7jei21M/annotate.int.src.vcf.gz  -c +INFO/IA,+INFO/IR /tmp/d5I7jei21M/annotate.int.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate   -c INFO/ii:=INFO/XX /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.rename.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob   -c INFO/ii:=INFO/XX /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.rename.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate   -c FORMAT/ff:=FORMAT/XX /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.rename.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob   -c FORMAT/ff:=FORMAT/XX /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.rename.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/d5I7jei21M/annots36.bed.gz  -c CHROM,POS,-,~X,-,AF,-,-,- -i'SVTYPE={X}' -k /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate36.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/d5I7jei21M/annots36.bed.gz  -c CHROM,POS,-,~X,-,AF,-,-,- -i'SVTYPE={X}' -k /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate36.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/d5I7jei21M/annots36.bed.gz  -c CHROM,BEG,END,~X,-,AF,-,-,- -i'SVTYPE={X}' -k /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate36.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/d5I7jei21M/annots36.bed.gz  -c CHROM,BEG,END,~X,-,AF,-,-,- -i'SVTYPE={X}' -k /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate36.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/d5I7jei21M/annots35.vcf.gz  -c CHROM,POS,~ID,REF,ALT,INFO/src /tmp/d5I7jei21M/annotate35.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/d5I7jei21M/annots35.vcf.gz  -c CHROM,POS,~ID,REF,ALT,INFO/src /tmp/d5I7jei21M/annotate35.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/d5I7jei21M/annotate.escape.1.tab.gz  -c CHROM,POS,ISTR,FMT/FSTR /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.escape.1.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/d5I7jei21M/annotate.escape.1.tab.gz  -c CHROM,POS,ISTR,FMT/FSTR /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.escape.1.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/d5I7jei21M/annotate.match.1.tab.gz  -c CHROM,POS,-,-,SCORE,~X,-,- -i'STR={X}' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.match.1.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/d5I7jei21M/annotate.match.1.tab.gz  -c CHROM,POS,-,-,SCORE,~X,-,- -i'STR={X}' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.match.1.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/d5I7jei21M/annotate.match.1.tab.gz  -c CHROM,POS,REF,ALT,SCORE,-,~X,- -i'INT={X}' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.match.1.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/d5I7jei21M/annotate.match.1.tab.gz  -c CHROM,POS,REF,ALT,SCORE,-,~X,- -i'INT={X}' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.match.1.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/d5I7jei21M/annotate.match.1.tab.gz  -c CHROM,POS,REF,ALT,SCORE,-,-,~X -i'FLT={X}' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.match.1.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/d5I7jei21M/annotate.match.1.tab.gz  -c CHROM,POS,REF,ALT,SCORE,-,-,~X -i'FLT={X}' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.match.1.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/d5I7jei21M/annotate.tab.gz -h /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.hdr -c CHROM,POS,REF,ALT,ID,QUAL,INFO/T_INT,INFO/T_FLOAT,INDEL /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/d5I7jei21M/annotate.tab.gz -h /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.hdr -c CHROM,POS,REF,ALT,ID,QUAL,INFO/T_INT,INFO/T_FLOAT,INDEL /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/d5I7jei21M/annotate2.tab.gz -h /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.hdr -c CHROM,POS,-,T_STR /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/d5I7jei21M/annotate2.tab.gz -h /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.hdr -c CHROM,POS,-,T_STR /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/d5I7jei21M/annotate2.tab.gz -h /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.hdr -c CHROM,FROM,TO,T_STR /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/d5I7jei21M/annotate2.tab.gz -h /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.hdr -c CHROM,FROM,TO,T_STR /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/d5I7jei21M/annots.vcf.gz  -c STR,ID,QUAL,FILTER /tmp/d5I7jei21M/annotate.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/d5I7jei21M/annots.vcf.gz  -c STR,ID,QUAL,FILTER /tmp/d5I7jei21M/annotate.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/d5I7jei21M/annots2.vcf.gz  -c ID,QUAL,FILTER,INFO,FMT /tmp/d5I7jei21M/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/d5I7jei21M/annots2.vcf.gz  -c ID,QUAL,FILTER,INFO,FMT /tmp/d5I7jei21M/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/d5I7jei21M/annots2.vcf.gz  -c ID,QUAL,+FILTER,+INFO,FMT/GT -s A /tmp/d5I7jei21M/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/d5I7jei21M/annots2.vcf.gz  -c ID,QUAL,+FILTER,+INFO,FMT/GT -s A /tmp/d5I7jei21M/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/d5I7jei21M/annots2.vcf.gz  -c ID,QUAL,+FILTER,+INFO,FMT/GT -s "A B" /tmp/d5I7jei21M/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/d5I7jei21M/annots2.vcf.gz  -c ID,QUAL,+FILTER,+INFO,FMT/GT -s "A B" /tmp/d5I7jei21M/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/d5I7jei21M/annots2.vcf.gz  -c ID,QUAL,+FILTER,+INFO,FMT/GT -s "A C" /tmp/d5I7jei21M/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/d5I7jei21M/annots2.vcf.gz  -c ID,QUAL,+FILTER,+INFO,FMT/GT -s "A C" /tmp/d5I7jei21M/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/d5I7jei21M/annots2.vcf.gz  -c ID,QUAL,+FILTER,+INFO,FMT/GT -s "B C" /tmp/d5I7jei21M/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/d5I7jei21M/annots2.vcf.gz  -c ID,QUAL,+FILTER,+INFO,FMT/GT -s "B C" /tmp/d5I7jei21M/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate   -x ID,QUAL,^FILTER/fltA,FILTER/fltB,^INFO/AA,INFO/BB,^FMT/GT,FMT/PL /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate3.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob   -x ID,QUAL,^FILTER/fltA,FILTER/fltB,^INFO/AA,INFO/BB,^FMT/GT,FMT/PL /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate3.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate   -x FORMAT /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate3.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob   -x FORMAT /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate3.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/d5I7jei21M/annots4.vcf.gz  -c +INFO /tmp/d5I7jei21M/annotate4.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/d5I7jei21M/annots4.vcf.gz  -c +INFO /tmp/d5I7jei21M/annotate4.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/d5I7jei21M/annots4.tab.gz -h /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate4.hdr -c CHROM,POS,REF,ALT,+FA,+FR,+IA,+IR,+SA,+SR /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate4.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/d5I7jei21M/annots4.tab.gz -h /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate4.hdr -c CHROM,POS,REF,ALT,+FA,+FR,+IA,+IR,+SA,+SR /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate4.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/d5I7jei21M/annots10.tab.gz -h /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate10.hdr -c CHROM,POS,FMT/FINT,FMT/FFLT,FMT/FSTR /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate10.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/d5I7jei21M/annots10.tab.gz -h /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate10.hdr -c CHROM,POS,FMT/FINT,FMT/FFLT,FMT/FSTR /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate10.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/d5I7jei21M/annots2.vcf.gz  -c CHROM,POS,FMT/FINT,FMT/FFLT,FMT/FSTR -s A /tmp/d5I7jei21M/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/d5I7jei21M/annots2.vcf.gz  -c CHROM,POS,FMT/FINT,FMT/FFLT,FMT/FSTR -s A /tmp/d5I7jei21M/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/d5I7jei21M/annots11.tab.gz  -c CHROM,POS,FMT/FINT,FMT/FFLT,FMT/FSTR -s A /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/d5I7jei21M/annots11.tab.gz  -c CHROM,POS,FMT/FINT,FMT/FFLT,FMT/FSTR -s A /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/d5I7jei21M/annots2.vcf.gz  -c AAA:=IINT,FMT/BBB:=FMT/FINT /tmp/d5I7jei21M/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/d5I7jei21M/annots2.vcf.gz  -c AAA:=IINT,FMT/BBB:=FMT/FINT /tmp/d5I7jei21M/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/d5I7jei21M/annots2.vcf.gz  -x INFO -c INFO/IINT /tmp/d5I7jei21M/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/d5I7jei21M/annots2.vcf.gz  -x INFO -c INFO/IINT /tmp/d5I7jei21M/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/d5I7jei21M/annots2.vcf.gz  -x INFO -c INFO/IINT -e'POS=3000001' -k /tmp/d5I7jei21M/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/d5I7jei21M/annots2.vcf.gz  -x INFO -c INFO/IINT -e'POS=3000001' -k /tmp/d5I7jei21M/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/d5I7jei21M/annots11.vcf.gz  -c FMT /tmp/d5I7jei21M/annotate11.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/d5I7jei21M/annots11.vcf.gz  -c FMT /tmp/d5I7jei21M/annotate11.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/d5I7jei21M/annots2.vcf.gz  -c FMT/newGT:=GT /tmp/d5I7jei21M/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/d5I7jei21M/annots2.vcf.gz  -c FMT/newGT:=GT /tmp/d5I7jei21M/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/d5I7jei21M/annots12.vcf.gz  -c FMT/GT:=newGT /tmp/d5I7jei21M/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/d5I7jei21M/annots12.vcf.gz  -c FMT/GT:=newGT /tmp/d5I7jei21M/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/d5I7jei21M/annots13.tab.gz -h /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate13.hdr -c CHROM,BEG,END,ABC /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate13.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/d5I7jei21M/annots13.tab.gz -h /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate13.hdr -c CHROM,BEG,END,ABC /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate13.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/d5I7jei21M/annots13.tab.gz -h /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate13.hdr -c CHROM,BEG,END,ABC -l ABC:append /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate13.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/d5I7jei21M/annots13.tab.gz -h /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate13.hdr -c CHROM,BEG,END,ABC -l ABC:append /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate13.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/d5I7jei21M/annots13.tab.gz -h /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate13.hdr -c CHROM,BEG,END,ABC -l ABC:unique /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate13.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/d5I7jei21M/annots13.tab.gz -h /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate13.hdr -c CHROM,BEG,END,ABC -l ABC:unique /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate13.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate   -x FILTER/XX,INFO/XX --force /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate14.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob   -x FILTER/XX,INFO/XX --force /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate14.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/d5I7jei21M/annotate15.tab.gz -h /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate15.hdr -s SAMPLE1 -c CHROM,FROM,TO,FMT/FOO,BAR /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate15.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/d5I7jei21M/annotate15.tab.gz -h /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate15.hdr -s SAMPLE1 -c CHROM,FROM,TO,FMT/FOO,BAR /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate15.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/d5I7jei21M/annotate15.tab.gz -h /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate15.hdr -s SAMPLE2 -c CHROM,FROM,TO,FMT/FOO,BAR /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate15.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/d5I7jei21M/annotate15.tab.gz -h /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate15.hdr -s SAMPLE2 -c CHROM,FROM,TO,FMT/FOO,BAR /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate15.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/d5I7jei21M/annotate15.tab.gz  -s SAMPLE2 -c CHROM,FROM,TO,FMT/FOO,BAR -H '##FORMAT=<ID=FOO,Number=1,Type=String,Description="Some description">' -H '##INFO=<ID=BAR,Number=1,Type=Integer,Description="Some description">' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate15.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/d5I7jei21M/annotate15.tab.gz  -s SAMPLE2 -c CHROM,FROM,TO,FMT/FOO,BAR -H '##FORMAT=<ID=FOO,Number=1,Type=String,Description="Some description">' -H '##INFO=<ID=BAR,Number=1,Type=Integer,Description="Some description">' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate15.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate   -x FILTER /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate16.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob   -x FILTER /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate16.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/d5I7jei21M/annotate17.1.tab.gz  -c CHROM,BEG,END,A,B -l A:append,B:append /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate17.1.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/d5I7jei21M/annotate17.1.tab.gz  -c CHROM,BEG,END,A,B -l A:append,B:append /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate17.1.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/d5I7jei21M/annotate17.1.tab.gz  -c CHROM,BEG,END,A,B -l A:append,B:append /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate17.2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/d5I7jei21M/annotate17.1.tab.gz  -c CHROM,BEG,END,A,B -l A:append,B:append /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate17.2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/d5I7jei21M/annotate17.3.tab.gz  -c CHROM,BEG,END,A,B -l A:append,B:append /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate17.3.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/d5I7jei21M/annotate17.3.tab.gz  -c CHROM,BEG,END,A,B -l A:append,B:append /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate17.3.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/d5I7jei21M/annotate18.1.tab.gz  -c CHROM,BEG,END,A,B,C,D,E -l A:sum,B:avg,C:min,D:max,E:append /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate18.1.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/d5I7jei21M/annotate18.1.tab.gz  -c CHROM,BEG,END,A,B,C,D,E -l A:sum,B:avg,C:min,D:max,E:append /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate18.1.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/d5I7jei21M/annotate18.2.tab.gz  -c CHROM,BEG,END,A,B,C,D,E -l A:sum,B:avg,C:min,D:max,E:append /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate18.2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/d5I7jei21M/annotate18.2.tab.gz  -c CHROM,BEG,END,A,B,C,D,E -l A:sum,B:avg,C:min,D:max,E:append /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate18.2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/d5I7jei21M/annotate19.src.vcf.gz  -c INFO/ID:=ID,INFO/INFO_ID:=INFO/ID,ID,=ID:=INFO/ID /tmp/d5I7jei21M/annotate19.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/d5I7jei21M/annotate19.src.vcf.gz  -c INFO/ID:=ID,INFO/INFO_ID:=INFO/ID,ID,=ID:=INFO/ID /tmp/d5I7jei21M/annotate19.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/d5I7jei21M/annotate19.src.vcf.gz  -c FILTER,INFO/FILTER:=FILTER,INFO/INFO_FILTER:=INFO/FILTER /tmp/d5I7jei21M/annotate19.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/d5I7jei21M/annotate19.src.vcf.gz  -c FILTER,INFO/FILTER:=FILTER,INFO/INFO_FILTER:=INFO/FILTER /tmp/d5I7jei21M/annotate19.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/d5I7jei21M/annotate19.src.vcf.gz  -c INFO/FILTER:=FILTER,INFO/INFO_FILTER:=INFO/FILTER /tmp/d5I7jei21M/annotate19.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/d5I7jei21M/annotate19.src.vcf.gz  -c INFO/FILTER:=FILTER,INFO/INFO_FILTER:=INFO/FILTER /tmp/d5I7jei21M/annotate19.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate   -c INFO/FILTER:=FILTER /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate19.dst.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob   -c INFO/FILTER:=FILTER /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate19.dst.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/d5I7jei21M/annotate19.src.vcf.gz  -c INFO/FILTER:=FILTER /tmp/d5I7jei21M/annotate19.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/d5I7jei21M/annotate19.src.vcf.gz  -c INFO/FILTER:=FILTER /tmp/d5I7jei21M/annotate19.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/d5I7jei21M/annotate19.src.vcf.gz  -c INFO/FILTER:=./FILTER /tmp/d5I7jei21M/annotate19.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/d5I7jei21M/annotate19.src.vcf.gz  -c INFO/FILTER:=./FILTER /tmp/d5I7jei21M/annotate19.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/d5I7jei21M/annotate19.src.vcf.gz  -c INFO/FILTER:=./FILTER,FILTER /tmp/d5I7jei21M/annotate19.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/d5I7jei21M/annotate19.src.vcf.gz  -c INFO/FILTER:=./FILTER,FILTER /tmp/d5I7jei21M/annotate19.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/d5I7jei21M/annotate19.src.vcf.gz  -c FILTER,INFO/FILTER:=./FILTER /tmp/d5I7jei21M/annotate19.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/d5I7jei21M/annotate19.src.vcf.gz  -c FILTER,INFO/FILTER:=./FILTER /tmp/d5I7jei21M/annotate19.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/d5I7jei21M/annotate20.src.vcf.gz  -c  FMT/GT /tmp/d5I7jei21M/annotate20.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/d5I7jei21M/annotate20.src.vcf.gz  -c  FMT/GT /tmp/d5I7jei21M/annotate20.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/d5I7jei21M/annotate20.src.vcf.gz  -c +FMT/GT /tmp/d5I7jei21M/annotate20.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/d5I7jei21M/annotate20.src.vcf.gz  -c +FMT/GT /tmp/d5I7jei21M/annotate20.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/d5I7jei21M/annotate20.src.vcf.gz  -c -FMT/GT /tmp/d5I7jei21M/annotate20.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/d5I7jei21M/annotate20.src.vcf.gz  -c -FMT/GT /tmp/d5I7jei21M/annotate20.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/d5I7jei21M/annotate.multi.tab.gz  -c CHROM,POS,REF,ALT,ANN -l ANN:append /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.multi.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/d5I7jei21M/annotate.multi.tab.gz  -c CHROM,POS,REF,ALT,ANN -l ANN:append /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.multi.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/d5I7jei21M/annotate.missing-append.tab.gz  -c CHROM,POS,REF,ALT,STR,INT,FLT -l STR:append-missing,INT:append-missing,FLT:append-missing /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.missing-append.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/d5I7jei21M/annotate.missing-append.tab.gz  -c CHROM,POS,REF,ALT,STR,INT,FLT -l STR:append-missing,INT:append-missing,FLT:append-missing /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.missing-append.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/d5I7jei21M/annots9.tab.gz  -c CHROM,POS,REF,ALT,+ID /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate9.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/d5I7jei21M/annots9.tab.gz  -c CHROM,POS,REF,ALT,+ID /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate9.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate   --rename-annots /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate21.txt /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate21.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob   --rename-annots /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate21.txt /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate21.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate   -c XX:=FORMAT/X-X,YY:=FORMAT/Y-Y,AA:=FORMAT/A-A,AA:=INFO/A-A,BB:=INFO/B-B,XX:=INFO/X-X,YY:=INFO/Y-Y,fltA:=FILTER/flt-A,fltB:=FILTER/flt-B,fltX:=FILTER/flt-X,fltY:=FILTER/flt-Y /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate21.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob   -c XX:=FORMAT/X-X,YY:=FORMAT/Y-Y,AA:=FORMAT/A-A,AA:=INFO/A-A,BB:=INFO/B-B,XX:=INFO/X-X,YY:=INFO/Y-Y,fltA:=FILTER/flt-A,fltB:=FILTER/flt-B,fltX:=FILTER/flt-X,fltY:=FILTER/flt-Y /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate21.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/d5I7jei21M/annotate22.vcf.gz  -c FMT/XX,INFO/XX -x FMT/XX,INFO/XX /tmp/d5I7jei21M/annotate22.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/d5I7jei21M/annotate22.vcf.gz  -c FMT/XX,INFO/XX -x FMT/XX,INFO/XX /tmp/d5I7jei21M/annotate22.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/d5I7jei21M/annotate23.tab.gz  -c CHROM,POS,~ID,REF,ALT,INFO/END /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate23.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/d5I7jei21M/annotate23.tab.gz  -c CHROM,POS,~ID,REF,ALT,INFO/END /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate23.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/d5I7jei21M/annotate24.src.vcf.gz  -c XX /tmp/d5I7jei21M/annotate24.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/d5I7jei21M/annotate24.src.vcf.gz  -c XX /tmp/d5I7jei21M/annotate24.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/d5I7jei21M/annotate25.tab.gz  -c CHROM,POS,ID,REF,ALT,~INFO/END /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate25.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/d5I7jei21M/annotate25.tab.gz  -c CHROM,POS,ID,REF,ALT,~INFO/END /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate25.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/d5I7jei21M/annotate26.tab.gz  -c CHROM,POS,-POS /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate26.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/d5I7jei21M/annotate26.tab.gz  -c CHROM,POS,-POS /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate26.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/d5I7jei21M/annotate.missing.tab.gz  -c CHROM,POS,REF,ALT,TSTR,TFLT,TINT /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.missing.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/d5I7jei21M/annotate.missing.tab.gz  -c CHROM,POS,REF,ALT,TSTR,TFLT,TINT /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.missing.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/d5I7jei21M/annotate.missing.tab.gz  -c CHROM,POS,REF,ALT,.TSTR,.TFLT,.TINT /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.missing.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/d5I7jei21M/annotate.missing.tab.gz  -c CHROM,POS,REF,ALT,.TSTR,.TFLT,.TINT /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.missing.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/d5I7jei21M/annotate.missing.tab.gz  -c CHROM,POS,REF,ALT,.+TSTR,.+TFLT,.+TINT /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.missing.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/d5I7jei21M/annotate.missing.tab.gz  -c CHROM,POS,REF,ALT,.+TSTR,.+TFLT,.+TINT /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.missing.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/d5I7jei21M/annotate.missing.tab.gz  -c CHROM,POS,REF,ALT,+TSTR,+TFLT,+TINT /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.missing.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/d5I7jei21M/annotate.missing.tab.gz  -c CHROM,POS,REF,ALT,+TSTR,+TFLT,+TINT /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.missing.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/d5I7jei21M/annotate.missing.tab.gz  -c CHROM,POS,REF,ALT,.=TSTR,.=TFLT,.=TINT /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.missing.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/d5I7jei21M/annotate.missing.tab.gz  -c CHROM,POS,REF,ALT,.=TSTR,.=TFLT,.=TINT /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.missing.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/d5I7jei21M/annotate.missing.tab.gz  -c CHROM,POS,REF,ALT,=TSTR,=TFLT,=TINT /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.missing.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/d5I7jei21M/annotate.missing.tab.gz  -c CHROM,POS,REF,ALT,=TSTR,=TFLT,=TINT /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.missing.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/d5I7jei21M/annots.olap.tab.gz  -c CHROM,BEG,END,DB -l DB:unique /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.olap.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/d5I7jei21M/annots.olap.tab.gz  -c CHROM,BEG,END,DB -l DB:unique /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.olap.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/d5I7jei21M/annots.olap.tab.gz  -c CHROM,BEG,END,DB -l DB:unique --min-overlap 0.4:0.5 -m XXX /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.olap.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/d5I7jei21M/annots.olap.tab.gz  -c CHROM,BEG,END,DB -l DB:unique --min-overlap 0.4:0.5 -m XXX /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.olap.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/d5I7jei21M/annots.id.vcf.gz  -c ALT /tmp/d5I7jei21M/annotate.id.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/d5I7jei21M/annots.id.vcf.gz  -c ALT /tmp/d5I7jei21M/annotate.id.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/d5I7jei21M/annots.id.vcf.gz  -c +ALT /tmp/d5I7jei21M/annotate.id.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/d5I7jei21M/annots.id.vcf.gz  -c +ALT /tmp/d5I7jei21M/annotate.id.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/d5I7jei21M/annots.id.2.vcf.gz  --pair-logic some -c +ID /tmp/d5I7jei21M/annotate.id.2.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/d5I7jei21M/annots.id.2.vcf.gz  --pair-logic some -c +ID /tmp/d5I7jei21M/annotate.id.2.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/d5I7jei21M/annots.id.2.vcf.gz  --pair-logic any -c +ID /tmp/d5I7jei21M/annotate.id.2.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/d5I7jei21M/annots.id.2.vcf.gz  --pair-logic any -c +ID /tmp/d5I7jei21M/annotate.id.2.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/d5I7jei21M/annotate27.tab.gz  -c CHROM,POS,REF,ALT,EVIDENCE /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate27.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/d5I7jei21M/annotate27.tab.gz  -c CHROM,POS,REF,ALT,EVIDENCE /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate27.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/d5I7jei21M/annots28.tab.gz  -c CHROM,POS,REF,ALT,FMT/TEST -s smpl1,smpl2 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate28.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/d5I7jei21M/annots28.tab.gz  -c CHROM,POS,REF,ALT,FMT/TEST -s smpl1,smpl2 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate28.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/d5I7jei21M/annots28.tab.gz  -c CHROM,POS,REF,ALT,FMT/TEST -s smpl2,smpl1 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate28.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/d5I7jei21M/annots28.tab.gz  -c CHROM,POS,REF,ALT,FMT/TEST -s smpl2,smpl1 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate28.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/d5I7jei21M/annots28.tab.gz  -c CHROM,POS,REF,ALT,FMT/TEST -s smpl1 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate28.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/d5I7jei21M/annots28.tab.gz  -c CHROM,POS,REF,ALT,FMT/TEST -s smpl1 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate28.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/d5I7jei21M/annots28.tab.gz  -c CHROM,POS,REF,ALT,FMT/TEST -s smpl2 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate28.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/d5I7jei21M/annots28.tab.gz  -c CHROM,POS,REF,ALT,FMT/TEST -s smpl2 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate28.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate   -m XXX /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob   -m XXX /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/d5I7jei21M/annots34.tab.gz  -c CHROM,FROM,TO,INFO/END -H '##INFO=<ID=END,Number=1,Type=Integer,Description="End coordinate in reference for SV">' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate34.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/d5I7jei21M/annots34.tab.gz  -c CHROM,FROM,TO,INFO/END -H '##INFO=<ID=END,Number=1,Type=Integer,Description="End coordinate in reference for SV">' /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate34.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -a /tmp/d5I7jei21M/annots-mark.bed.gz  -c CHROM,FROM,TO -m TAG /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annots-mark.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate -Ob -a /tmp/d5I7jei21M/annots-mark.bed.gz  -c CHROM,FROM,TO -m TAG /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annots-mark.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +check-ploidy --no-version /tmp/d5I7jei21M/checkploidy.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +check-ploidy --no-version /tmp/d5I7jei21M/checkploidy.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +check-ploidy --no-version /tmp/d5I7jei21M/checkploidy.2.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +check-ploidy --no-version /tmp/d5I7jei21M/checkploidy.2.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +check-ploidy --no-version /tmp/d5I7jei21M/checkploidy.2.vcf.gz -- -m | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +check-ploidy --no-version /tmp/d5I7jei21M/checkploidy.2.bcf -- -m | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +missing2ref --no-version /tmp/d5I7jei21M/plugin1.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +missing2ref --no-version /tmp/d5I7jei21M/plugin1.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +setGT --no-version /tmp/d5I7jei21M/plugin1.vcf.gz -- -t . -n 0 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +setGT --no-version /tmp/d5I7jei21M/plugin1.bcf -- -t . -n 0 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +setGT --no-version /tmp/d5I7jei21M/setGT.vcf.gz -- -t q -n 0 -i 'GT~"." && FMT/DP=30 && GQ=150' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +setGT --no-version /tmp/d5I7jei21M/setGT.bcf -- -t q -n 0 -i 'GT~"." && FMT/DP=30 && GQ=150' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +setGT --no-version /tmp/d5I7jei21M/setGT.2.vcf.gz -- -t q -n . -i 'GT[@/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/setGT.samples.txt]="het"' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +setGT --no-version /tmp/d5I7jei21M/setGT.2.bcf -- -t q -n . -i 'GT[@/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/setGT.samples.txt]="het"' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +setGT --no-version /tmp/d5I7jei21M/setGT.2.vcf.gz -- -t q -n . -i 'GT[@/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/setGT.samples.txt]="het" & binom(AD[@/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/setGT.samples.txt])<0.1' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +setGT --no-version /tmp/d5I7jei21M/setGT.2.bcf -- -t q -n . -i 'GT[@/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/setGT.samples.txt]="het" & binom(AD[@/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/setGT.samples.txt])<0.1' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +setGT --no-version /tmp/d5I7jei21M/setGT.2.vcf.gz -- -t a -n i | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +setGT --no-version /tmp/d5I7jei21M/setGT.2.bcf -- -t a -n i | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +setGT --no-version /tmp/d5I7jei21M/setGT.3.vcf.gz -- -t a -n pM | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +setGT --no-version /tmp/d5I7jei21M/setGT.3.bcf -- -t a -n pM | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +setGT --no-version /tmp/d5I7jei21M/setGT.3.vcf.gz -- -t a -n pm | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +setGT --no-version /tmp/d5I7jei21M/setGT.3.bcf -- -t a -n pm | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +setGT --no-version /tmp/d5I7jei21M/setGT.3.vcf.gz -- -t a -n c:1 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +setGT --no-version /tmp/d5I7jei21M/setGT.3.bcf -- -t a -n c:1 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +setGT --no-version /tmp/d5I7jei21M/setGT.3.vcf.gz -- -t a -n c:"1|1" | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +setGT --no-version /tmp/d5I7jei21M/setGT.3.bcf -- -t a -n c:"1|1" | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +setGT --no-version /tmp/d5I7jei21M/setGT.3.vcf.gz -- -t a -n c:"m|M" | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +setGT --no-version /tmp/d5I7jei21M/setGT.3.bcf -- -t a -n c:"m|M" | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +setGT --no-version /tmp/d5I7jei21M/setGT.3.vcf.gz -- -t a -n c:0/1/1 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +setGT --no-version /tmp/d5I7jei21M/setGT.3.bcf -- -t a -n c:0/1/1 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +setGT --no-version /tmp/d5I7jei21M/setGT.3.vcf.gz -i 'GT="mis"' -- -t . -nc:././. | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +setGT --no-version /tmp/d5I7jei21M/setGT.3.bcf -i 'GT="mis"' -- -t . -nc:././. | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +setGT --no-version /tmp/d5I7jei21M/setGT.4.vcf.gz -- -t q -n . -e 'FMT/DP>90' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +setGT --no-version /tmp/d5I7jei21M/setGT.4.bcf -- -t q -n . -e 'FMT/DP>90' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +setGT --no-version /tmp/d5I7jei21M/setGT.4.vcf.gz -- -t q -n . -e 'FMT/DP>100' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +setGT --no-version /tmp/d5I7jei21M/setGT.4.bcf -- -t q -n . -e 'FMT/DP>100' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +setGT --no-version /tmp/d5I7jei21M/setGT.5.vcf.gz -- -t a -n X | grep -v ^##bcftools_
.. ok

[W::bcf_hdr_check_sanity] AD should be declared as Number=R
[W::bcf_hdr_check_sanity] AD should be declared as Number=R
test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +setGT --no-version /tmp/d5I7jei21M/setGT.5.bcf -- -t a -n X | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +setGT --no-version /tmp/d5I7jei21M/setGT.5.vcf.gz -- -t a -n c:0/X/X | grep -v ^##bcftools_
.. ok

[W::bcf_hdr_check_sanity] AD should be declared as Number=R
[W::bcf_hdr_check_sanity] AD should be declared as Number=R
test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +setGT --no-version /tmp/d5I7jei21M/setGT.5.bcf -- -t a -n c:0/X/X | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +setGT --no-version /tmp/d5I7jei21M/setGT.6.vcf.gz -- -t ./x -n . | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +setGT --no-version /tmp/d5I7jei21M/setGT.6.bcf -- -t ./x -n . | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +setGT --no-version /tmp/d5I7jei21M/setGT.6.vcf.gz -- -t . -n . | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +setGT --no-version /tmp/d5I7jei21M/setGT.6.bcf -- -t . -n . | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +setGT --no-version /tmp/d5I7jei21M/setGT.6.vcf.gz -- -t r:0.5 -n . | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +setGT --no-version /tmp/d5I7jei21M/setGT.6.bcf -- -t r:0.5 -n . | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-AN-AC --no-version /tmp/d5I7jei21M/plugin1.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-AN-AC --no-version /tmp/d5I7jei21M/plugin1.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +dosage /tmp/d5I7jei21M/dosage.vcf.gz -- -t PL | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +dosage /tmp/d5I7jei21M/dosage.bcf -- -t PL | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +dosage /tmp/d5I7jei21M/dosage.vcf.gz -- -t GL | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +dosage /tmp/d5I7jei21M/dosage.bcf -- -t GL | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +dosage /tmp/d5I7jei21M/dosage.vcf.gz -- -t GT | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +dosage /tmp/d5I7jei21M/dosage.bcf -- -t GT | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fixploidy --no-version /tmp/d5I7jei21M/fixploidy.vcf.gz -- -s /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/fixploidy.samples -p /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/fixploidy.ploidy | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fixploidy --no-version /tmp/d5I7jei21M/fixploidy.bcf -- -s /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/fixploidy.samples -p /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/fixploidy.ploidy | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +guess-ploidy /tmp/d5I7jei21M/view.PL.vcf.gz -v -rX | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +guess-ploidy /tmp/d5I7jei21M/view.PL.bcf -v -rX | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +guess-ploidy /tmp/d5I7jei21M/view.GL.vcf.gz -v -rX | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +guess-ploidy /tmp/d5I7jei21M/view.GL.bcf -v -rX | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +tag2tag --no-version /tmp/d5I7jei21M/view.GL.vcf.gz -- -r --gl-to-pl | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +tag2tag --no-version /tmp/d5I7jei21M/view.GL.bcf -- -r --gl-to-pl | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +tag2tag --no-version /tmp/d5I7jei21M/view.GL.vcf.gz -- --gl-to-gp | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +tag2tag --no-version /tmp/d5I7jei21M/view.GL.bcf -- --gl-to-gp | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +tag2tag --no-version /tmp/d5I7jei21M/view.GP.vcf.gz -- -r --gp-to-gt -t 0.2 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +tag2tag --no-version /tmp/d5I7jei21M/view.GP.bcf -- -r --gp-to-gt -t 0.2 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +tag2tag --no-version /tmp/d5I7jei21M/tag2tag.LPL.1.vcf.gz -- --LXX-to-XX | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +tag2tag --no-version /tmp/d5I7jei21M/tag2tag.LPL.1.bcf -- --LXX-to-XX | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +tag2tag --no-version /tmp/d5I7jei21M/tag2tag.LPL.1.vcf.gz -- --LXX-to-XX -r | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +tag2tag --no-version /tmp/d5I7jei21M/tag2tag.LPL.1.bcf -- --LXX-to-XX -r | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +tag2tag --no-version /tmp/d5I7jei21M/tag2tag.LPL.1.vcf.gz -- --LXX-to-XX -r -d AD:0,PL:255 -s 3 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +tag2tag --no-version /tmp/d5I7jei21M/tag2tag.LPL.1.bcf -- --LXX-to-XX -r -d AD:0,PL:255 -s 3 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +add-variantkey /tmp/d5I7jei21M/query.variantkey.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +add-variantkey /tmp/d5I7jei21M/query.variantkey.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +variantkey-hex /tmp/d5I7jei21M/query.variantkey.vcf.gz test/ | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +variantkey-hex /tmp/d5I7jei21M/query.variantkey.bcf test/ | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +allele-length /tmp/d5I7jei21M/query.nucleotide.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +allele-length /tmp/d5I7jei21M/query.nucleotide.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/d5I7jei21M/fill-tags.MAC-MAF.vcf.gz -- -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/fill-tags.3.smpl -t 'MAC:1=MAC' | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/d5I7jei21M/fill-tags.MAC-MAF.bcf -- -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/fill-tags.3.smpl -t 'MAC:1=MAC' | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/d5I7jei21M/fill-tags.MAC-MAF.vcf.gz -- -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/fill-tags.3.smpl -t 'MAC:1=int(MAF*AN)' | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/d5I7jei21M/fill-tags.MAC-MAF.bcf -- -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/fill-tags.3.smpl -t 'MAC:1=int(MAF*AN)' | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/d5I7jei21M/query.func.1.vcf.gz -- -t 'FMT/AB:1=float(FMT/AD[*:0] / ssum(FMT/AD[*]))' | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/d5I7jei21M/query.func.1.bcf -- -t 'FMT/AB:1=float(FMT/AD[*:0] / ssum(FMT/AD[*]))' | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/d5I7jei21M/fmissing.vcf.gz -- -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/fmissing.txt -t 'F_MISSING' | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/d5I7jei21M/fmissing.bcf -- -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/fmissing.txt -t 'F_MISSING' | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/d5I7jei21M/fmissing.vcf.gz -- -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/fmissing.txt -t 'F_MISSING:1=F_PASS(GT="mis")' | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/d5I7jei21M/fmissing.bcf -- -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/fmissing.txt -t 'F_MISSING:1=F_PASS(GT="mis")' | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/d5I7jei21M/fmissing.vcf.gz -- -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/fmissing.txt -t 'N_MISSING:1=int(N_PASS(GT="mis"))' | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/d5I7jei21M/fmissing.bcf -- -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/fmissing.txt -t 'N_MISSING:1=int(N_PASS(GT="mis"))' | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/d5I7jei21M/fisher.vcf.gz -- -t 'FT:1=phred(fisher(INFO/DP4))' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/d5I7jei21M/fisher.bcf -- -t 'FT:1=phred(fisher(INFO/DP4))' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/d5I7jei21M/fisher.vcf.gz -- -t 'FT:1=phred(fisher(INFO/ADF[0,2],INFO/ADR[0,2]))' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/d5I7jei21M/fisher.bcf -- -t 'FT:1=phred(fisher(INFO/ADF[0,2],INFO/ADR[0,2]))' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/d5I7jei21M/fisher.vcf.gz -- -t 'FT:1=phred(fisher(INFO/ADF,INFO/ADR))' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/d5I7jei21M/fisher.bcf -- -t 'FT:1=phred(fisher(INFO/ADF,INFO/ADR))' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/d5I7jei21M/fisher.vcf.gz -- -t 'FMT/FT:1=phred(fisher(FMT/DP4))' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/d5I7jei21M/fisher.bcf -- -t 'FMT/FT:1=phred(fisher(FMT/DP4))' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/d5I7jei21M/fisher.vcf.gz -- -t 'FMT/FT:1=phred(fisher(FORMAT/ADF,FORMAT/ADR))' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/d5I7jei21M/fisher.bcf -- -t 'FMT/FT:1=phred(fisher(FORMAT/ADF,FORMAT/ADR))' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/d5I7jei21M/fisher.vcf.gz -- -t 'FMT/FT:1=phred(fisher(FORMAT/ADF[:0,1],FORMAT/ADR[:0,1]))' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/d5I7jei21M/fisher.bcf -- -t 'FMT/FT:1=phred(fisher(FORMAT/ADF[:0,1],FORMAT/ADR[:0,1]))' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/d5I7jei21M/merge.a.vcf.gz -- -t AN,AC,AC_Hom,AC_Het,AC_Hemi | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/d5I7jei21M/merge.a.bcf -- -t AN,AC,AC_Hom,AC_Het,AC_Hemi | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/d5I7jei21M/view.vcf.gz -- -t AC,AN,AF,MAF,NS | grep -v ^##bcftools_
.. ok

[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/d5I7jei21M/view.bcf -- -t AC,AN,AF,MAF,NS | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/d5I7jei21M/view.vcf.gz -- -t AC -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/fill-tags.3.smpl | grep -v ^##bcftools_
.. ok

[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/d5I7jei21M/view.bcf -- -t AC -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/fill-tags.3.smpl | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/d5I7jei21M/view.vcf.gz -- -t "DP:1=int(sum(FORMAT/DP))" -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/fill-tags.3.smpl | grep -v ^##bcftools_
.. ok

[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/d5I7jei21M/view.bcf -- -t "DP:1=int(sum(FORMAT/DP))" -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/fill-tags.3.smpl | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/d5I7jei21M/many-alts.vcf.gz -- -t AN,AC | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/d5I7jei21M/many-alts.bcf -- -t AN,AC | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/d5I7jei21M/fill-tags-hemi.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/d5I7jei21M/fill-tags-hemi.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/d5I7jei21M/fill-tags-hemi.vcf.gz -- -d | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/d5I7jei21M/fill-tags-hemi.bcf -- -d | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/d5I7jei21M/fill-tags-hwe.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/d5I7jei21M/fill-tags-hwe.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/d5I7jei21M/fill-tags-hwe.vcf.gz -- -t 'XX:1=F_PASS(GT="alt")' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/d5I7jei21M/fill-tags-hwe.bcf -- -t 'XX:1=F_PASS(GT="alt")' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/d5I7jei21M/fill-tags-rw.vcf.gz -- -t all,END,TYPE,F_MISSING | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/d5I7jei21M/fill-tags-rw.bcf -- -t all,END,TYPE,F_MISSING | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/d5I7jei21M/fill-tags-AN0.vcf.gz -- -t all,END,TYPE,F_MISSING | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/d5I7jei21M/fill-tags-AN0.bcf -- -t all,END,TYPE,F_MISSING | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/d5I7jei21M/fill-tags-VAF.vcf.gz -- -t VAF,VAF1 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/d5I7jei21M/fill-tags-VAF.bcf -- -t VAF,VAF1 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/d5I7jei21M/fill-tags-AD.vcf.gz -- -t 'INFO/DP:1=int(sum(FMT/AD))' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/d5I7jei21M/fill-tags-AD.bcf -- -t 'INFO/DP:1=int(sum(FMT/AD))' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/d5I7jei21M/fill-tags-AD.vcf.gz -- -t 'INFO/DP:1=int(sum(INFO/AD))' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/d5I7jei21M/fill-tags-AD.bcf -- -t 'INFO/DP:1=int(sum(INFO/AD))' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/d5I7jei21M/fill-tags-AD.vcf.gz -- -t 'FORMAT/DP:1=int(smpl_sum(FMT/AD))' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/d5I7jei21M/fill-tags-AD.bcf -- -t 'FORMAT/DP:1=int(smpl_sum(FMT/AD))' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/d5I7jei21M/fill-tags-AD.vcf.gz -- -t 'XX=N_PASS(FMT/AD[:0]<=10)','YY=N_PASS(FMT/AD[:0]>10)' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/d5I7jei21M/fill-tags-AD.bcf -- -t 'XX=N_PASS(FMT/AD[:0]<=10)','YY=N_PASS(FMT/AD[:0]>10)' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/d5I7jei21M/fill-tags-AD.vcf.gz -- -t 'good=N_PASS(binom(FMT/AD[:0],FMT/AD[:1])>=1e-5)','bad=N_PASS(binom(FMT/AD[:0],FMT/AD[:1])<1e-5)' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-tags --no-version /tmp/d5I7jei21M/fill-tags-AD.bcf -- -t 'good=N_PASS(binom(FMT/AD[:0],FMT/AD[:1])>=1e-5)','bad=N_PASS(binom(FMT/AD[:0],FMT/AD[:1])<1e-5)' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +GTisec /tmp/d5I7jei21M/view.vcf.gz  | grep -v bcftools | grep -v ^##bcftools_
.. ok

[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +GTisec /tmp/d5I7jei21M/view.bcf  | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +GTisec /tmp/d5I7jei21M/view.vcf.gz -- -H | grep -v bcftools | grep -v ^##bcftools_
.. ok

[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +GTisec /tmp/d5I7jei21M/view.bcf -- -H | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +GTisec /tmp/d5I7jei21M/view.vcf.gz -- -Hm | grep -v bcftools | grep -v ^##bcftools_
.. ok

[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +GTisec /tmp/d5I7jei21M/view.bcf -- -Hm | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +GTisec /tmp/d5I7jei21M/view.vcf.gz -- -Hmv | grep -v bcftools | grep -v ^##bcftools_
.. ok

[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +GTisec /tmp/d5I7jei21M/view.bcf -- -Hmv | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +GTisec /tmp/d5I7jei21M/view.vcf.gz -- -Hv | grep -v bcftools | grep -v ^##bcftools_
.. ok

[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +GTisec /tmp/d5I7jei21M/view.bcf -- -Hv | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +GTisec /tmp/d5I7jei21M/view.vcf.gz -- -m | grep -v bcftools | grep -v ^##bcftools_
.. ok

[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +GTisec /tmp/d5I7jei21M/view.bcf -- -m | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +GTisec /tmp/d5I7jei21M/view.vcf.gz -- -mv | grep -v bcftools | grep -v ^##bcftools_
.. ok

[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +GTisec /tmp/d5I7jei21M/view.bcf -- -mv | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +GTisec /tmp/d5I7jei21M/view.vcf.gz -- -v | grep -v bcftools | grep -v ^##bcftools_
.. ok

[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +GTisec /tmp/d5I7jei21M/view.bcf -- -v | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-switch-rate /tmp/d5I7jei21M/trio.vcf.gz -- -p /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/trio.ped | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-switch-rate /tmp/d5I7jei21M/trio.bcf -- -p /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/trio.ped | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-stats /tmp/d5I7jei21M/trio-stats.vcf.gz -a 1 -p /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/trio-stats.ped -d mendel-errors,transmitted | grep -v ^CMD | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-stats /tmp/d5I7jei21M/trio-stats.bcf -a 1 -p /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/trio-stats.ped -d mendel-errors,transmitted | grep -v ^CMD | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-stats /tmp/d5I7jei21M/trio-stats.vcf.gz -p /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/trio-stats.ped -d mendel-errors,transmitted | grep -v ^CMD | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-stats /tmp/d5I7jei21M/trio-stats.bcf -p /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/trio-stats.ped -d mendel-errors,transmitted | grep -v ^CMD | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +smpl-stats /tmp/d5I7jei21M/indel-stats.vcf.gz | grep -v ^CMD | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +smpl-stats /tmp/d5I7jei21M/indel-stats.bcf | grep -v ^CMD | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +indel-stats /tmp/d5I7jei21M/indel-stats.vcf.gz | grep -v ^CMD | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +indel-stats /tmp/d5I7jei21M/indel-stats.bcf | grep -v ^CMD | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +indel-stats /tmp/d5I7jei21M/indel-stats.vcf.gz  -p /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/trio-stats.ped | grep -v ^CMD | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +indel-stats /tmp/d5I7jei21M/indel-stats.bcf  -p /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/trio-stats.ped | grep -v ^CMD | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +indel-stats /tmp/d5I7jei21M/indel-stats.vcf.gz  -p /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/trio-stats.2.ped | grep -v ^CMD | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +indel-stats /tmp/d5I7jei21M/indel-stats.bcf  -p /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/trio-stats.2.ped | grep -v ^CMD | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +ad-bias /tmp/d5I7jei21M/ad-bias.vcf.gz -- -s /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/ad-bias.samples | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +ad-bias /tmp/d5I7jei21M/ad-bias.bcf -- -s /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/ad-bias.samples | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +ad-bias /tmp/d5I7jei21M/ad-bias.2.vcf.gz -- -s /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/ad-bias.samples | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +ad-bias /tmp/d5I7jei21M/ad-bias.2.bcf -- -s /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/ad-bias.samples | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +ad-bias /tmp/d5I7jei21M/ad-bias.vcf.gz --no-version -- -s /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/ad-bias.samples -c | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +ad-bias /tmp/d5I7jei21M/ad-bias.bcf --no-version -- -s /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/ad-bias.samples -c | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +ad-bias /tmp/d5I7jei21M/ad-bias.2.vcf.gz --no-version -- -s /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/ad-bias.samples -c | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +ad-bias /tmp/d5I7jei21M/ad-bias.2.bcf --no-version -- -s /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/ad-bias.samples -c | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +af-dist /tmp/d5I7jei21M/af-dist.vcf.gz  | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +af-dist /tmp/d5I7jei21M/af-dist.bcf  | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fixref /tmp/d5I7jei21M/fixref.2a.vcf.gz -- -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.fa -i /tmp/d5I7jei21M/fixref.2b.vcf.gz | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fixref /tmp/d5I7jei21M/fixref.2a.bcf -- -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.fa -i /tmp/d5I7jei21M/fixref.2b.vcf.gz | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fixref /tmp/d5I7jei21M/fixref.3.vcf.gz -- -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/fixref.3.fa -m top | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fixref /tmp/d5I7jei21M/fixref.3.bcf -- -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/fixref.3.fa -m top | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fixref /tmp/d5I7jei21M/fixref.2a.vcf.gz -- -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.fa -m ref-alt | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fixref /tmp/d5I7jei21M/fixref.2a.bcf -- -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.fa -m ref-alt | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fixref /tmp/d5I7jei21M/fixref.2a.vcf.gz -- -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.fa -m flip | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fixref /tmp/d5I7jei21M/fixref.2a.bcf -- -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.fa -m flip | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fixref /tmp/d5I7jei21M/fixref.2a.vcf.gz -- -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.fa -m flip-all | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fixref /tmp/d5I7jei21M/fixref.2a.bcf -- -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.fa -m flip-all | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fixref /tmp/d5I7jei21M/fixref.2a.vcf.gz -- -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.fa -m swap | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fixref /tmp/d5I7jei21M/fixref.2a.bcf -- -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.fa -m swap | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-from-fasta /tmp/d5I7jei21M/aa.vcf.gz -- -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/aa.fa -c AA -h /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/aa.hdr -i 'TYPE="snp"' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-from-fasta /tmp/d5I7jei21M/aa.bcf -- -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/aa.fa -c AA -h /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/aa.hdr -i 'TYPE="snp"' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-from-fasta /tmp/d5I7jei21M/aa.vcf.gz -- -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/aa.fa -c REF -N | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-from-fasta /tmp/d5I7jei21M/aa.bcf -- -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/aa.fa -c REF -N | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-from-fasta /tmp/d5I7jei21M/ref.vcf.gz -- -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.fa -c REF | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +fill-from-fasta /tmp/d5I7jei21M/ref.bcf -- -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/norm.fa -c REF | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +GTsubset --no-version /tmp/d5I7jei21M/view.vcf.gz -- -s NA00001 | grep -v ^##bcftools_
.. ok

[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +GTsubset --no-version /tmp/d5I7jei21M/view.bcf -- -s NA00001 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +GTsubset --no-version /tmp/d5I7jei21M/view.vcf.gz -- -s NA00001,NA00002 | grep -v ^##bcftools_
.. ok

[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +GTsubset --no-version /tmp/d5I7jei21M/view.bcf -- -s NA00001,NA00002 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +GTsubset --no-version /tmp/d5I7jei21M/view.vcf.gz -- -s NA00001,NA00002,NA00003 | grep -v ^##bcftools_
.. ok

[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
[W::bcf_hdr_check_sanity] MQ should be declared as Type=Float
test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +GTsubset --no-version /tmp/d5I7jei21M/view.bcf -- -s NA00001,NA00002,NA00003 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +mendelian2 /tmp/d5I7jei21M/mendelian.vcf.gz -p 2X:child1,dad1,mom1 -md | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +mendelian2 /tmp/d5I7jei21M/mendelian.bcf -p 2X:child1,dad1,mom1 -md | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +mendelian2 /tmp/d5I7jei21M/mendelian.vcf.gz -P /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mendelian.ped -md | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +mendelian2 /tmp/d5I7jei21M/mendelian.bcf -P /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mendelian.ped -md | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +mendelian2 /tmp/d5I7jei21M/mendelian.vcf.gz -p 1X:child1,dad1,mom1 -mg | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +mendelian2 /tmp/d5I7jei21M/mendelian.bcf -p 1X:child1,dad1,mom1 -mg | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +mendelian2 /tmp/d5I7jei21M/mendelian.vcf.gz -p 1X:child1,dad1,mom1 -me | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +mendelian2 /tmp/d5I7jei21M/mendelian.bcf -p 1X:child1,dad1,mom1 -me | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +mendelian2 /tmp/d5I7jei21M/mendelian.vcf.gz -p 1X:child1,dad1,mom1 -ma | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +mendelian2 /tmp/d5I7jei21M/mendelian.bcf -p 1X:child1,dad1,mom1 -ma | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +mendelian2 /tmp/d5I7jei21M/mendelian.vcf.gz -p 1X:child1,dad1,mom1 -mm | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +mendelian2 /tmp/d5I7jei21M/mendelian.bcf -p 1X:child1,dad1,mom1 -mm | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +mendelian2 /tmp/d5I7jei21M/mendelian.vcf.gz -p 1X:child1,dad1,mom1 | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +mendelian2 /tmp/d5I7jei21M/mendelian.bcf -p 1X:child1,dad1,mom1 | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +mendelian2 /tmp/d5I7jei21M/mendelian.vcf.gz -p 2X:child1,dad1,mom1 | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +mendelian2 /tmp/d5I7jei21M/mendelian.bcf -p 2X:child1,dad1,mom1 | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +contrast /tmp/d5I7jei21M/contrast.vcf.gz -a PASSOC,FASSOC,NOVELAL,NOVELGT -0 a,b -1 c | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +contrast /tmp/d5I7jei21M/contrast.bcf -a PASSOC,FASSOC,NOVELAL,NOVELGT -0 a,b -1 c | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +contrast /tmp/d5I7jei21M/contrast.vcf.gz -a PASSOC,FASSOC,NOVELAL,NOVELGT -0 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/contrast0.txt -1 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/contrast1.txt | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +contrast /tmp/d5I7jei21M/contrast.bcf -a PASSOC,FASSOC,NOVELAL,NOVELGT -0 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/contrast0.txt -1 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/contrast1.txt | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +contrast /tmp/d5I7jei21M/contrast.vcf.gz -a NASSOC -0 a,b,c -1 d --force-samples | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +contrast /tmp/d5I7jei21M/contrast.bcf -a NASSOC -0 a,b,c -1 d --force-samples | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +contrast /tmp/d5I7jei21M/contrast.1.vcf.gz -a NOVELAL,NOVELGT -0 A -1 B | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +contrast /tmp/d5I7jei21M/contrast.1.bcf -a NOVELAL,NOVELGT -0 A -1 B | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +contrast /tmp/d5I7jei21M/contrast.1.vcf.gz -a NOVELGT -0 A -1 B | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +contrast /tmp/d5I7jei21M/contrast.1.bcf -a NOVELGT -0 A -1 B | grep -v ^##bcftools_
.. ok

test_trio_dnm3:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/trio-dnm3/test.sh /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-dnm3 /tmp/d5I7jei21M/trio-dnm/trio-dnm.1.vcf.gz -p proband,father,mother --use-ALM --ppl --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-dnm3 /tmp/d5I7jei21M/trio-dnm/trio-dnm.1.bcf -p proband,father,mother --use-ALM --ppl --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-dnm3 /tmp/d5I7jei21M/trio-dnm/trio-dnm.2.vcf.gz -p proband,father,mother --use-ALM --ppl --dnm-tag DNM:log --force-AD | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-dnm3 /tmp/d5I7jei21M/trio-dnm/trio-dnm.2.bcf -p proband,father,mother --use-ALM --ppl --dnm-tag DNM:log --force-AD | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-dnm3 /tmp/d5I7jei21M/trio-dnm/trio-dnm.4.vcf.gz -p proband,father,mother --use-DNG | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-dnm3 /tmp/d5I7jei21M/trio-dnm/trio-dnm.4.bcf -p proband,father,mother --use-DNG | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-dnm3 /tmp/d5I7jei21M/trio-dnm/trio-dnm.4.vcf.gz -p proband,father,mother --use-ALM | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-dnm3 /tmp/d5I7jei21M/trio-dnm/trio-dnm.4.bcf -p proband,father,mother --use-ALM | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-dnm3 /tmp/d5I7jei21M/trio-dnm/trio-dnm.4.vcf.gz -p proband,father,mother --use-DNG --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-dnm3 /tmp/d5I7jei21M/trio-dnm/trio-dnm.4.bcf -p proband,father,mother --use-DNG --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-dnm3 /tmp/d5I7jei21M/trio-dnm/trio-dnm.4.vcf.gz -p proband,father,mother --use-ALM --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-dnm3 /tmp/d5I7jei21M/trio-dnm/trio-dnm.4.bcf -p proband,father,mother --use-ALM --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-dnm3 /tmp/d5I7jei21M/trio-dnm/trio-dnm.5.vcf.gz -p proband,father,mother --use-DNG --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-dnm3 /tmp/d5I7jei21M/trio-dnm/trio-dnm.5.bcf -p proband,father,mother --use-DNG --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-dnm3 /tmp/d5I7jei21M/trio-dnm/trio-dnm.5.vcf.gz -p proband,father,mother --use-ALM --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-dnm3 /tmp/d5I7jei21M/trio-dnm/trio-dnm.5.bcf -p proband,father,mother --use-ALM --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-dnm3 /tmp/d5I7jei21M/trio-dnm/trio-dnm.6.vcf.gz -p proband,father,mother --use-DNG --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-dnm3 /tmp/d5I7jei21M/trio-dnm/trio-dnm.6.bcf -p proband,father,mother --use-DNG --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-dnm3 /tmp/d5I7jei21M/trio-dnm/trio-dnm.6.vcf.gz -p proband,father,mother --use-ALM --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[\t%DNM]\t[\t%VAF]\t[\t%VA]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-dnm3 /tmp/d5I7jei21M/trio-dnm/trio-dnm.6.bcf -p proband,father,mother --use-ALM --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[\t%DNM]\t[\t%VAF]\t[\t%VA]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-dnm3 /tmp/d5I7jei21M/trio-dnm/trio-dnm.7.vcf.gz -p proband,father,mother --use-DNG --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-dnm3 /tmp/d5I7jei21M/trio-dnm/trio-dnm.7.bcf -p proband,father,mother --use-DNG --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-dnm3 /tmp/d5I7jei21M/trio-dnm/trio-dnm.7.vcf.gz -p proband,father,mother --use-ALM --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-dnm3 /tmp/d5I7jei21M/trio-dnm/trio-dnm.7.bcf -p proband,father,mother --use-ALM --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-dnm3 /tmp/d5I7jei21M/trio-dnm/trio-dnm.8.vcf.gz -p proband,father,mother --use-ALM | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-dnm3 /tmp/d5I7jei21M/trio-dnm/trio-dnm.8.bcf -p proband,father,mother --use-ALM | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-dnm3 /tmp/d5I7jei21M/trio-dnm/trio-dnm.9.vcf.gz -p 1X:proband,father,mother --use-NAIVE | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[\t%DNM]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-dnm3 /tmp/d5I7jei21M/trio-dnm/trio-dnm.9.bcf -p 1X:proband,father,mother --use-NAIVE | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[\t%DNM]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-dnm3 /tmp/d5I7jei21M/trio-dnm/trio-dnm.9.vcf.gz -p 2X:proband,father,mother --use-NAIVE | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[\t%DNM]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-dnm3 /tmp/d5I7jei21M/trio-dnm/trio-dnm.9.bcf -p 2X:proband,father,mother --use-NAIVE | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[\t%DNM]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-dnm3 /tmp/d5I7jei21M/trio-dnm/trio-dnm.10.vcf.gz -p proband,father,mother --use-ALM --with-pAD | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[\t%DNM][\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-dnm3 /tmp/d5I7jei21M/trio-dnm/trio-dnm.10.bcf -p proband,father,mother --use-ALM --with-pAD | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[\t%DNM][\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-dnm3 /tmp/d5I7jei21M/trio-dnm/trio-dnm.11.vcf.gz -p 1X:proband,father,mother --use-ALM | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%CHROM:%POS  DNM=[%DNM ]\tAD=[%AD ]\tQS=[%QS ]\tVAF=[%VAF ]\tVA=[%VA ]' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-dnm3 /tmp/d5I7jei21M/trio-dnm/trio-dnm.11.bcf -p 1X:proband,father,mother --use-ALM | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%CHROM:%POS  DNM=[%DNM ]\tAD=[%AD ]\tQS=[%QS ]\tVAF=[%VAF ]\tVA=[%VA ]' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-dnm3 /tmp/d5I7jei21M/trio-dnm/trio-dnm.11.vcf.gz -p 1X:proband,father,mother --use-ALM --strictly-novel | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%CHROM:%POS  DNM=[%DNM ]\tAD=[%AD ]\tQS=[%QS ]\tVAF=[%VAF ]\tVA=[%VA ]' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-dnm3 /tmp/d5I7jei21M/trio-dnm/trio-dnm.11.bcf -p 1X:proband,father,mother --use-ALM --strictly-novel | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%CHROM:%POS  DNM=[%DNM ]\tAD=[%AD ]\tQS=[%QS ]\tVAF=[%VAF ]\tVA=[%VA ]' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-dnm3 /tmp/d5I7jei21M/trio-dnm/trio-dnm.12.vcf.gz -p child,dad,mom --with-cAD --max-QM -30 | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%CHROM:%POS  DNM=[%DNM ]\tAD=[%AD ]\tVAF=[%VAF ]' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-dnm3 /tmp/d5I7jei21M/trio-dnm/trio-dnm.12.bcf -p child,dad,mom --with-cAD --max-QM -30 | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%CHROM:%POS  DNM=[%DNM ]\tAD=[%AD ]\tVAF=[%VAF ]' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-dnm3 /tmp/d5I7jei21M/trio-dnm/trio-dnm.12.vcf.gz -p child,dad,mom --with-cAD --max-QM -30 --use-DMM | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%CHROM:%POS  DNM=[%DNM ]\tAD=[%AD ]\tVAF=[%VAF ]' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +trio-dnm3 /tmp/d5I7jei21M/trio-dnm/trio-dnm.12.bcf -p child,dad,mom --with-cAD --max-QM -30 --use-DMM | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%CHROM:%POS  DNM=[%DNM ]\tAD=[%AD ]\tVAF=[%VAF ]' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +gvcfz /tmp/d5I7jei21M/gvcfz.vcf.gz -g 'PASS:GT!="alt"' -a | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%END[\t%GT][\t%DP][\t%GQ][\t%RGQ]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +gvcfz /tmp/d5I7jei21M/gvcfz.bcf -g 'PASS:GT!="alt"' -a | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%END[\t%GT][\t%DP][\t%GQ][\t%RGQ]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +gvcfz /tmp/d5I7jei21M/gvcfz.vcf.gz -g 'PASS:GQ>10; FLT:-' -a | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%FILTER\t%END[\t%GT][\t%DP][\t%GQ][\t%RGQ]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +gvcfz /tmp/d5I7jei21M/gvcfz.bcf -g 'PASS:GQ>10; FLT:-' -a | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%FILTER\t%END[\t%GT][\t%DP][\t%GQ][\t%RGQ]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +gvcfz /tmp/d5I7jei21M/gvcfz.2.vcf.gz -g 'PASS:GT!="alt"' -a | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%FILTER\t%END[\t%GT][\t%DP]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +gvcfz /tmp/d5I7jei21M/gvcfz.2.bcf -g 'PASS:GT!="alt"' -a | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%FILTER\t%END[\t%GT][\t%DP]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +remove-overlaps /tmp/d5I7jei21M/remove-overlaps.1.vcf.gz -m overlap | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +remove-overlaps /tmp/d5I7jei21M/remove-overlaps.1.bcf -m overlap | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +remove-overlaps /tmp/d5I7jei21M/remove-overlaps.1.vcf.gz -m overlap -M overlap | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +remove-overlaps /tmp/d5I7jei21M/remove-overlaps.1.bcf -m overlap -M overlap | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +remove-overlaps /tmp/d5I7jei21M/remove-overlaps.1.vcf.gz -m overlap -O t | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +remove-overlaps /tmp/d5I7jei21M/remove-overlaps.1.bcf -m overlap -O t | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +remove-overlaps /tmp/d5I7jei21M/remove-overlaps.1.vcf.gz -m overlap --reverse | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +remove-overlaps /tmp/d5I7jei21M/remove-overlaps.1.bcf -m overlap --reverse | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +remove-overlaps /tmp/d5I7jei21M/remove-overlaps.1.vcf.gz -m dup -M DUP | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +remove-overlaps /tmp/d5I7jei21M/remove-overlaps.1.bcf -m dup -M DUP | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +remove-overlaps /tmp/d5I7jei21M/remove-overlaps.1.vcf.gz -m dup -M unique --reverse | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +remove-overlaps /tmp/d5I7jei21M/remove-overlaps.1.bcf -m dup -M unique --reverse | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +remove-overlaps /tmp/d5I7jei21M/remove-overlaps.2.vcf.gz -m 'min(QUAL)' -M rmme | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +remove-overlaps /tmp/d5I7jei21M/remove-overlaps.2.bcf -m 'min(QUAL)' -M rmme | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +remove-overlaps /tmp/d5I7jei21M/remove-overlaps.3.vcf.gz -m 'min(QUAL)' -M rmme | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +remove-overlaps /tmp/d5I7jei21M/remove-overlaps.3.bcf -m 'min(QUAL)' -M rmme | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +remove-overlaps /tmp/d5I7jei21M/remove-overlaps.3.vcf.gz -m 'min(QUAL)' -M rmme --missing 0 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +remove-overlaps /tmp/d5I7jei21M/remove-overlaps.3.bcf -m 'min(QUAL)' -M rmme --missing 0 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +remove-overlaps /tmp/d5I7jei21M/remove-overlaps.3.vcf.gz -m 'min(QUAL)' -M rmme --missing DP | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +remove-overlaps /tmp/d5I7jei21M/remove-overlaps.3.bcf -m 'min(QUAL)' -M rmme --missing DP | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.icase.1.vcf.gz --csq-field Annotation_Impact -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/split-vep.icase.1.severity -s :MODERATE+ -f '%Annotation_Impact\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.icase.1.bcf --csq-field Annotation_Impact -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/split-vep.icase.1.severity -s :MODERATE+ -f '%Annotation_Impact\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.icase.1.vcf.gz --csq-field Annotation_Impact -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/split-vep.icase.1.severity -s :moderate+ -f '%Annotation_Impact\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.icase.1.bcf --csq-field Annotation_Impact -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/split-vep.icase.1.severity -s :moderate+ -f '%Annotation_Impact\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.12.vcf.gz -s all:any:worst -f '%CHROM\t%POS\t%Annotation\n' | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.12.bcf -s all:any:worst -f '%CHROM\t%POS\t%Annotation\n' | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.11.vcf.gz --csq-field Annotation -a XXX -f '%CHROM\t%POS\t%REF\t%ALT\t%XXX\n' -d -A tab | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.11.bcf --csq-field Annotation -a XXX -f '%CHROM\t%POS\t%REF\t%ALT\t%XXX\n' -d -A tab | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.11.vcf.gz --csq-field Annotation -a XXX -f '%POS %xAnnotation\n' -p x | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.11.bcf --csq-field Annotation -a XXX -f '%POS %xAnnotation\n' -p x | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.vcf.gz -c Consequence -s worst:missense+ | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.bcf -c Consequence -s worst:missense+ | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.vcf.gz -c Consequence -s worst:missense+:worst | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.bcf -c Consequence -s worst:missense+:worst | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.vcf.gz -c Consequence -s worst:missense+ | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%Consequence\n' -i'Consequence!="."' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.bcf -c Consequence -s worst:missense+ | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%Consequence\n' -i'Consequence!="."' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.vcf.gz -s worst:missense+ -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.bcf -s worst:missense+ -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.vcf.gz -c Consequence -s worst:missense+:worst | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%Consequence\n' -i'Consequence!="."' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.bcf -c Consequence -s worst:missense+:worst | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%Consequence\n' -i'Consequence!="."' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.vcf.gz -s worst:missense+:worst -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.bcf -s worst:missense+:worst -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.vcf.gz -s primary:missense+ -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.bcf -s primary:missense+ -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.vcf.gz -s CANONICAL=YES:missense+ -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.bcf -s CANONICAL=YES:missense+ -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.vcf.gz -s primary:missense+:worst -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.bcf -s primary:missense+:worst -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.vcf.gz -s CANONICAL=YES:missense+:worst -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.bcf -s CANONICAL=YES:missense+:worst -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.vcf.gz -s primary:missense+ -f'%POS\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.bcf -s primary:missense+ -f'%POS\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.vcf.gz -s CANONICAL=YES:missense+ -f'%POS\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.bcf -s CANONICAL=YES:missense+ -f'%POS\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.2.vcf.gz -s worst -f'%POS\t%AF\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.2.bcf -s worst -f'%POS\t%AF\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.2.vcf.gz -s worst -f'%POS\t%AF\n' -a BCSQ | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.2.bcf -s worst -f'%POS\t%AF\n' -a BCSQ | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.2.vcf.gz -s worst -f'%POS\t%INFO/AF\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.2.bcf -s worst -f'%POS\t%INFO/AF\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.2.vcf.gz -s worst -f'%POS\t%INFO/AF\n' -a BCSQ | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.2.bcf -s worst -f'%POS\t%INFO/AF\n' -a BCSQ | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.3.vcf.gz -s worst -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.3.bcf -s worst -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.3.vcf.gz -s worst::worst -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.3.bcf -s worst::worst -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.3.vcf.gz -s worst -f'[%POS\t%SAMPLE\t%GT\t%Consequence\n]' -i'GT="alt"' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.3.bcf -s worst -f'[%POS\t%SAMPLE\t%GT\t%Consequence\n]' -i'GT="alt"' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.vcf.gz -t 1:14464 -f '%POS\t%CANONICAL\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.bcf -t 1:14464 -f '%POS\t%CANONICAL\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.vcf.gz -t 1:14464 -f '%POS\t%CANONICAL\t%Consequence\n' -d | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.bcf -t 1:14464 -f '%POS\t%CANONICAL\t%Consequence\n' -d | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.vcf.gz -t 1:14464 -f '%POS\t%CSQ\n' -A tab | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.bcf -t 1:14464 -f '%POS\t%CSQ\n' -A tab | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.vcf.gz -t 1:14464 -f '%POS\t%CSQ\n' -A tab -d | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.bcf -t 1:14464 -f '%POS\t%CSQ\n' -A tab -d | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.vcf.gz -t 1:14464 -f '%POS\t%CSQ\n' -A tab -d -H | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.bcf -t 1:14464 -f '%POS\t%CSQ\n' -A tab -d -H | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.vcf.gz -t 1:14464 -f '%POS\t%CSQ\n' -A tab -d -HH | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.bcf -t 1:14464 -f '%POS\t%CSQ\n' -A tab -d -HH | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.vcf.gz -t 1:14464 -f '%POS\t%CSQ\n' -A @@@ -d -H | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.bcf -t 1:14464 -f '%POS\t%CSQ\n' -A @@@ -d -H | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.4.vcf.gz -f '%POS\t%BCSQ\n' -a BCSQ -A tab -d | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.4.bcf -f '%POS\t%BCSQ\n' -a BCSQ -A tab -d | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.4.vcf.gz -f '%POS\t%BCSQ\n'         -A tab -d | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.4.bcf -f '%POS\t%BCSQ\n'         -A tab -d | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.4.vcf.gz -f '%POS\t%BCSQ\n' -a BCSQ -A tab -d -s ::worst | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.4.bcf -f '%POS\t%BCSQ\n' -a BCSQ -A tab -d -s ::worst | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.4.vcf.gz -f '%POS\t%BCSQ\n'         -A tab -d -s ::worst | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.4.bcf -f '%POS\t%BCSQ\n'         -A tab -d -s ::worst | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.vcf.gz -c gnomAD_NFE_AF:real,ALLELE_NUM:int | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%gnomAD_NFE_AF\t%ALLELE_NUM\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.bcf -c gnomAD_NFE_AF:real,ALLELE_NUM:int | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%gnomAD_NFE_AF\t%ALLELE_NUM\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.vcf.gz -c gnomAD_NFE_AF,ALLELE_NUM          | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%gnomAD_NFE_AF\t%ALLELE_NUM\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.bcf -c gnomAD_NFE_AF,ALLELE_NUM          | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%gnomAD_NFE_AF\t%ALLELE_NUM\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.5.vcf.gz -s :synonymous    -c Consequence | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.5.bcf -s :synonymous    -c Consequence | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.5.vcf.gz -s :synonymous -x -c Consequence | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.5.bcf -s :synonymous -x -c Consequence | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.6.vcf.gz -c SAS_AF | grep ID=SAS_AF | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.6.bcf -c SAS_AF | grep ID=SAS_AF | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.6.vcf.gz -c - | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.6.bcf -c - | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.6.vcf.gz -c - -s worst | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.6.bcf -c - -s worst | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.7.vcf.gz --annotation 'ANN' -c IMPACT -i 'INFO/IMPACT[*] ~ "MODIFIER"' | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.7.bcf --annotation 'ANN' -c IMPACT -i 'INFO/IMPACT[*] ~ "MODIFIER"' | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.8.vcf.gz -a BCSQ -s worst -c Consequence,amino_acid_change,BCSQ | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.8.bcf -a BCSQ -s worst -c Consequence,amino_acid_change,BCSQ | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.8.vcf.gz         -s worst -c Consequence,amino_acid_change,BCSQ | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.8.bcf         -s worst -c Consequence,amino_acid_change,BCSQ | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.8.vcf.gz -a BCSQ -s worst -f '%POS\t%Consequence\t%amino_acid_change\t%BCSQ\n' | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.8.bcf -a BCSQ -s worst -f '%POS\t%Consequence\t%amino_acid_change\t%BCSQ\n' | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.8.vcf.gz         -s worst -f '%POS\t%Consequence\t%amino_acid_change\t%BCSQ\n' | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.8.bcf         -s worst -f '%POS\t%Consequence\t%amino_acid_change\t%BCSQ\n' | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.9.vcf.gz -a BCSQ -f '%CHROM\t%POS\t%REF\t%ALT\t%BCSQ\n' -d -A tab | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.9.bcf -a BCSQ -f '%CHROM\t%POS\t%REF\t%ALT\t%BCSQ\n' -d -A tab | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.9.vcf.gz -a BCSQ -f '%xPOS %xConsequence\n' -p x | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.9.bcf -a BCSQ -f '%xPOS %xConsequence\n' -p x | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.10.vcf.gz -a CSQ -f '%M_CAP_pred %M_CAP_score\n' | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.10.bcf -a CSQ -f '%M_CAP_pred %M_CAP_score\n' | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.10.vcf.gz -a CSQ -f '%xM_CAP_pred %xM_CAP_score\n' -p x | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.10.bcf -a CSQ -f '%xM_CAP_pred %xM_CAP_score\n' -p x | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.10.vcf.gz        -f '%xM_CAP_pred %xM_CAP_score\n' -p x | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.10.bcf        -f '%xM_CAP_pred %xM_CAP_score\n' -p x | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.gene-list.vcf.gz -d -f '%CHROM:%POS %Gene %Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.gene-list.bcf -d -f '%CHROM:%POS %Gene %Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.gene-list.vcf.gz -d -f '%CHROM:%POS %Gene %Consequence\n' -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/split-vep.gene-list.txt | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.gene-list.bcf -d -f '%CHROM:%POS %Gene %Consequence\n' -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/split-vep.gene-list.txt | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.gene-list.vcf.gz -d -f '%CHROM:%POS %Gene %Consequence\n' -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/split-vep.mixed-list.txt --gene-list-fields Feature,SYMBOL | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.gene-list.bcf -d -f '%CHROM:%POS %Gene %Consequence\n' -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/split-vep.mixed-list.txt --gene-list-fields Feature,SYMBOL | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.gene-list.vcf.gz -d -f '%CHROM:%POS %Gene %Consequence\n' -g +/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/split-vep.gene-list.txt | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.gene-list.bcf -d -f '%CHROM:%POS %Gene %Consequence\n' -g +/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/split-vep.gene-list.txt | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.gene-list.vcf.gz -d -f '%CHROM:%POS %Gene %Consequence\n' -g +/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/split-vep.mixed-list.txt --gene-list-fields Feature,SYMBOL | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.gene-list.bcf -d -f '%CHROM:%POS %Gene %Consequence\n' -g +/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/split-vep.mixed-list.txt --gene-list-fields Feature,SYMBOL | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.broken-LoF.vcf.gz -d -f '%CHROM:%POS %Consequence %LoF_info\n' -a vep | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.broken-LoF.bcf -d -f '%CHROM:%POS %Consequence %LoF_info\n' -a vep | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.broken-LoF.vcf.gz -d -f '%CHROM:%POS %LoF_info\n' -a vep -i 'Consequence=="frameshift_variant"' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.broken-LoF.bcf -d -f '%CHROM:%POS %LoF_info\n' -a vep -i 'Consequence=="frameshift_variant"' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.vcf.gz -f'%POS\n' -i'SYMBOL~"SAMD11"' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.bcf -f'%POS\n' -i'SYMBOL~"SAMD11"' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.vcf.gz -f'%POS\t%MAX_AF\n' -i'MAX_AF>0.999' -c MAX_AF,MAX_AF:float,MAX_AF | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.bcf -f'%POS\t%MAX_AF\n' -i'MAX_AF>0.999' -c MAX_AF,MAX_AF:float,MAX_AF | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.filter.vcf.gz -s worst -i'CSQ~"nonsense"' -f '%POS %Consequence %Feature %BIOTYPE' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.filter.bcf -s worst -i'CSQ~"nonsense"' -f '%POS %Consequence %Feature %BIOTYPE' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.filter.vcf.gz -s worst -i'CSQ~"nonsense"' -f '%POS %Consequence %Feature %BIOTYPE %CSQ' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.filter.bcf -s worst -i'CSQ~"nonsense"' -f '%POS %Consequence %Feature %BIOTYPE %CSQ' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.select-tr-expr.vcf.gz -f '%POS %CANONICAL %MANE_SELECT %Consequence' -s primary | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.select-tr-expr.bcf -f '%POS %CANONICAL %MANE_SELECT %Consequence' -s primary | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.select-tr-expr.vcf.gz -f '%POS %CANONICAL %MANE_SELECT %Consequence' -s CANONICAL=YES | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.select-tr-expr.bcf -f '%POS %CANONICAL %MANE_SELECT %Consequence' -s CANONICAL=YES | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.select-tr-expr.vcf.gz -f '%POS %CANONICAL %MANE_SELECT %Consequence' -s CANONICAL!=YES | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.select-tr-expr.bcf -f '%POS %CANONICAL %MANE_SELECT %Consequence' -s CANONICAL!=YES | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.select-tr-expr.vcf.gz -f '%POS %CANONICAL %MANE_SELECT %Consequence' -s CANONICAL= | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.select-tr-expr.bcf -f '%POS %CANONICAL %MANE_SELECT %Consequence' -s CANONICAL= | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.select-tr-expr.vcf.gz -f '%POS %CANONICAL %MANE_SELECT %Consequence' -s mane | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.select-tr-expr.bcf -f '%POS %CANONICAL %MANE_SELECT %Consequence' -s mane | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.select-tr-expr.vcf.gz -f '%POS %CANONICAL %MANE_SELECT %Consequence' -s MANE_SELECT!='' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.select-tr-expr.bcf -f '%POS %CANONICAL %MANE_SELECT %Consequence' -s MANE_SELECT!='' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.select-tr-expr.vcf.gz -s mane | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.select-tr-expr.bcf -s mane | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.select-tr-expr.vcf.gz -s primary | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.select-tr-expr.bcf -s primary | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.select-tr-expr.vcf.gz -s PolyPhen~damaging | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.select-tr-expr.bcf -s PolyPhen~damaging | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.types.vcf.gz -f'%cDNA_position %CDS_position %Protein_position' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.types.bcf -f'%cDNA_position %CDS_position %Protein_position' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.types.vcf.gz -f'%cDNA_position %CDS_position %Protein_position' -c cDNA_position:int,CDS_position:int,Protein_position:int | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.types.bcf -f'%cDNA_position %CDS_position %Protein_position' -c cDNA_position:int,CDS_position:int,Protein_position:int | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.filter-missing-bt2098.vcf.gz -e 'gnomad_genomes_AF >= 0.02' | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%CHROM %POS 	 %gnomad_genomes_AF
' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.filter-missing-bt2098.bcf -e 'gnomad_genomes_AF >= 0.02' | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%CHROM %POS 	 %gnomad_genomes_AF
' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.filter-missing-bt2098.vcf.gz -i 'gnomad_genomes_AF < 0.02 || gnomad_genomes_AF=="."' | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%CHROM %POS 	 %gnomad_genomes_AF
' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split-vep /tmp/d5I7jei21M/split-vep.filter-missing-bt2098.bcf -i 'gnomad_genomes_AF < 0.02 || gnomad_genomes_AF=="."' | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%CHROM %POS 	 %gnomad_genomes_AF
' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +parental-origin /tmp/d5I7jei21M/parental-origin.vcf.gz -r 20:100 -p proband,father,mother -t del | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +parental-origin /tmp/d5I7jei21M/parental-origin.bcf -r 20:100 -p proband,father,mother -t del | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +parental-origin /tmp/d5I7jei21M/parental-origin.vcf.gz -r 20:101 -p proband,father,mother -t del | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +parental-origin /tmp/d5I7jei21M/parental-origin.bcf -r 20:101 -p proband,father,mother -t del | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +parental-origin /tmp/d5I7jei21M/parental-origin.vcf.gz -r 20:102 -p proband,father,mother -t del | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +parental-origin /tmp/d5I7jei21M/parental-origin.bcf -r 20:102 -p proband,father,mother -t del | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +parental-origin /tmp/d5I7jei21M/parental-origin.vcf.gz -r 20:103 -p proband,father,mother -t dup | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +parental-origin /tmp/d5I7jei21M/parental-origin.bcf -r 20:103 -p proband,father,mother -t dup | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +parental-origin /tmp/d5I7jei21M/parental-origin.vcf.gz -r 20:104 -p proband,father,mother -t dup | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +parental-origin /tmp/d5I7jei21M/parental-origin.bcf -r 20:104 -p proband,father,mother -t dup | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +prune -w 1 -a r2,LD,HD /tmp/d5I7jei21M/prune.1.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +prune -w 1 -a r2,LD,HD /tmp/d5I7jei21M/prune.1.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +prune -w 1 -a r2,LD,HD /tmp/d5I7jei21M/prune.2.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +prune -w 1 -a r2,LD,HD /tmp/d5I7jei21M/prune.2.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +prune -w 2 -a r2 -m 0.5 -f MaxR2 /tmp/d5I7jei21M/prune.1.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +prune -w 2 -a r2 -m 0.5 -f MaxR2 /tmp/d5I7jei21M/prune.1.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +prune -w 2 -a r2 -m 0.5  /tmp/d5I7jei21M/prune.1.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +prune -w 2 -a r2 -m 0.5  /tmp/d5I7jei21M/prune.1.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +prune -w 2bp -n 1 --AF-tag AF /tmp/d5I7jei21M/prune.1.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +prune -w 2bp -n 1 --AF-tag AF /tmp/d5I7jei21M/prune.1.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +prune -w 2bp -n 1 --AF-tag AF -i 'GT="alt"' /tmp/d5I7jei21M/prune.1.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +prune -w 2bp -n 1 --AF-tag AF -i 'GT="alt"' /tmp/d5I7jei21M/prune.1.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +prune -w 2bp -n 1 -N 1st /tmp/d5I7jei21M/prune.1.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +prune -w 2bp -n 1 -N 1st /tmp/d5I7jei21M/prune.1.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +prune -w 2bp -n 1 -N rand --random-seed 1 /tmp/d5I7jei21M/prune.1.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +prune -w 2bp -n 1 -N rand --random-seed 1 /tmp/d5I7jei21M/prune.1.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +prune -w 3bp -a count -i 'XX!=0' -k /tmp/d5I7jei21M/prune.3.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +prune -w 3bp -a count -i 'XX!=0' -k /tmp/d5I7jei21M/prune.3.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +prune -w 3bp -a count -i 'XX!=0' /tmp/d5I7jei21M/prune.3.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +prune -w 3bp -a count -i 'XX!=0' /tmp/d5I7jei21M/prune.3.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +prune -w 3bp -m count=2 -i 'XX!=0' /tmp/d5I7jei21M/prune.3.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +prune -w 3bp -m count=2 -i 'XX!=0' /tmp/d5I7jei21M/prune.3.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +variant-distance /tmp/d5I7jei21M/variant-distance.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +variant-distance /tmp/d5I7jei21M/variant-distance.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +variant-distance -d nearest /tmp/d5I7jei21M/variant-distance.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +variant-distance -d nearest /tmp/d5I7jei21M/variant-distance.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +variant-distance -d fwd /tmp/d5I7jei21M/variant-distance.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +variant-distance -d fwd /tmp/d5I7jei21M/variant-distance.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +variant-distance -d rev /tmp/d5I7jei21M/variant-distance.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +variant-distance -d rev /tmp/d5I7jei21M/variant-distance.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +variant-distance -d both /tmp/d5I7jei21M/variant-distance.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +variant-distance -d both /tmp/d5I7jei21M/variant-distance.bcf  | grep -v ^##bcftools_
.. ok

test_plugin_vrfs:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +vrfs -a /tmp/d5I7jei21M/mpileup.bam.list -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -s /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/vrfs.sites.txt | sort
.. ok

test_plugin_split:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/split.1.vcf -o /tmp/d5I7jei21M/split.1.1   && cd /tmp/d5I7jei21M/split.1.1  && for f in A1.vcf A2.vcf A3.vcf B1.vcf B2.vcf C.vcf; do echo $f; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -l $f; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -H $f; done
.. ok

test_plugin_split:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/split.1.vcf -o /tmp/d5I7jei21M/split.1.2 -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/split.smpl.1.2.txt  && cd /tmp/d5I7jei21M/split.1.2  && for f in A.vcf B.vcf C.vcf; do echo $f; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -l $f; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -H $f; done
.. ok

test_plugin_split:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/split.1.vcf -o /tmp/d5I7jei21M/split.1.3 -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/split.smpl.1.3.txt  && cd /tmp/d5I7jei21M/split.1.3  && for f in a3.vcf b2.vcf c.vcf; do echo $f; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -l $f; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -H $f; done
.. ok

test_plugin_split:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/split.1.vcf -o /tmp/d5I7jei21M/split.1.4 -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/split.smpl.1.3.txt -i 'GT[0]="alt"'  && cd /tmp/d5I7jei21M/split.1.4  && for f in a3.vcf b2.vcf c.vcf; do echo $f; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -l $f; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -H $f; done
.. ok

test_plugin_split:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/split.1.vcf -o /tmp/d5I7jei21M/split.1.5 -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/split.smpl.1.3.txt -i 'GT="alt"'  && cd /tmp/d5I7jei21M/split.1.5  && for f in a3.vcf b2.vcf c.vcf; do echo $f; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -l $f; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -H $f; done
.. ok

test_plugin_split:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/split.1.vcf -o /tmp/d5I7jei21M/split.1.6 -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/split.smpl.1.4.txt -i 'GT="alt"'  && cd /tmp/d5I7jei21M/split.1.6  && for f in file1.vcf file2.vcf file3.vcf; do echo $f; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -l $f; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -H $f; done
.. ok

test_plugin_split:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/split.1.vcf -o /tmp/d5I7jei21M/split.1.7 -G /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/split.grp.1.1.txt  && cd /tmp/d5I7jei21M/split.1.7  && for f in A.vcf A1.vcf A2.vcf B.vcf; do echo $f; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -l $f; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -H $f; done
.. ok

test_plugin_split:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +split /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/split.2.vcf -o /tmp/d5I7jei21M/split.2.1   && cd /tmp/d5I7jei21M/split.2.1  && for f in A1_A1-1.vcf A1_A1-2.vcf A1_A1.vcf B1.vcf B2.vcf C.vcf; do echo $f; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -l $f; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -H $f; done
.. ok

test_plugin_scatter:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +scatter /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/scatter.1.vcf -o /tmp/d5I7jei21M/scatter.1.1 -n 3 && cd /tmp/d5I7jei21M/scatter.1.1 && cat 0.vcf 1.vcf 2.vcf | grep -v ^##
.. ok

test_plugin_scatter:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +scatter /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/scatter.1.vcf -o /tmp/d5I7jei21M/scatter.1.2 -s 21,22 && cd /tmp/d5I7jei21M/scatter.1.2 && cat 21.vcf 22.vcf | grep -v ^##
.. ok

test_plugin_scatter:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +scatter /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/scatter.1.vcf -o /tmp/d5I7jei21M/scatter.1.3 -s 21,22 -x X && cd /tmp/d5I7jei21M/scatter.1.3 && cat 21.vcf 22.vcf X.vcf | grep -v ^##
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools concat --no-version -G  /tmp/d5I7jei21M/concat.1.a.vcf.gz /tmp/d5I7jei21M/concat.1.b.vcf.gz
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools concat -Ob -G  /tmp/d5I7jei21M/concat.1.a.vcf.gz /tmp/d5I7jei21M/concat.1.b.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools concat --no-version -G  /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/concat.1.a.vcf /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/concat.1.b.vcf
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools concat --no-version   /tmp/d5I7jei21M/concat.1.a.vcf.gz /tmp/d5I7jei21M/concat.1.b.vcf.gz
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools concat -Ob   /tmp/d5I7jei21M/concat.1.a.vcf.gz /tmp/d5I7jei21M/concat.1.b.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools concat --no-version   /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/concat.1.a.vcf /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/concat.1.b.vcf
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools concat --no-version   /tmp/d5I7jei21M/concat.1.a.bcf /tmp/d5I7jei21M/concat.1.b.bcf
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools concat -Ob   /tmp/d5I7jei21M/concat.1.a.bcf /tmp/d5I7jei21M/concat.1.b.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools concat --no-version -a  /tmp/d5I7jei21M/concat.2.a.vcf.gz /tmp/d5I7jei21M/concat.2.b.vcf.gz
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools concat -Ob -a  /tmp/d5I7jei21M/concat.2.a.vcf.gz /tmp/d5I7jei21M/concat.2.b.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools concat --no-version -a  /tmp/d5I7jei21M/concat.2.a.bcf /tmp/d5I7jei21M/concat.2.b.bcf
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools concat -Ob -a  /tmp/d5I7jei21M/concat.2.a.bcf /tmp/d5I7jei21M/concat.2.b.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools concat --no-version -aD  /tmp/d5I7jei21M/concat.2.a.vcf.gz /tmp/d5I7jei21M/concat.2.b.vcf.gz
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools concat -Ob -aD  /tmp/d5I7jei21M/concat.2.a.vcf.gz /tmp/d5I7jei21M/concat.2.b.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools concat --no-version -aD  /tmp/d5I7jei21M/concat.2.a.bcf /tmp/d5I7jei21M/concat.2.b.bcf
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools concat -Ob -aD  /tmp/d5I7jei21M/concat.2.a.bcf /tmp/d5I7jei21M/concat.2.b.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools concat --no-version -l --ligate-warn  /tmp/d5I7jei21M/concat.3.a.vcf.gz /tmp/d5I7jei21M/concat.3.b.vcf.gz /tmp/d5I7jei21M/concat.3.0.vcf.gz /tmp/d5I7jei21M/concat.3.c.vcf.gz /tmp/d5I7jei21M/concat.3.d.vcf.gz /tmp/d5I7jei21M/concat.3.e.vcf.gz /tmp/d5I7jei21M/concat.3.f.vcf.gz
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools concat -Ob -l --ligate-warn  /tmp/d5I7jei21M/concat.3.a.vcf.gz /tmp/d5I7jei21M/concat.3.b.vcf.gz /tmp/d5I7jei21M/concat.3.0.vcf.gz /tmp/d5I7jei21M/concat.3.c.vcf.gz /tmp/d5I7jei21M/concat.3.d.vcf.gz /tmp/d5I7jei21M/concat.3.e.vcf.gz /tmp/d5I7jei21M/concat.3.f.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools concat --no-version -l --ligate-warn  /tmp/d5I7jei21M/concat.3.a.bcf /tmp/d5I7jei21M/concat.3.b.bcf /tmp/d5I7jei21M/concat.3.0.bcf /tmp/d5I7jei21M/concat.3.c.bcf /tmp/d5I7jei21M/concat.3.d.bcf /tmp/d5I7jei21M/concat.3.e.bcf /tmp/d5I7jei21M/concat.3.f.bcf
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools concat -Ob -l --ligate-warn  /tmp/d5I7jei21M/concat.3.a.bcf /tmp/d5I7jei21M/concat.3.b.bcf /tmp/d5I7jei21M/concat.3.0.bcf /tmp/d5I7jei21M/concat.3.c.bcf /tmp/d5I7jei21M/concat.3.d.bcf /tmp/d5I7jei21M/concat.3.e.bcf /tmp/d5I7jei21M/concat.3.f.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
Random seed for test_naive_concat: 2027237536571070078
.. ok

test_naive_concat:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools concat --naive-force /tmp/d5I7jei21M/naive_concat.0.bcf /tmp/d5I7jei21M/naive_concat.1.bcf /tmp/d5I7jei21M/naive_concat.2.bcf /tmp/d5I7jei21M/naive_concat.3.bcf /tmp/d5I7jei21M/naive_concat.4.bcf /tmp/d5I7jei21M/naive_concat.5.bcf /tmp/d5I7jei21M/naive_concat.6.bcf /tmp/d5I7jei21M/naive_concat.7.bcf /tmp/d5I7jei21M/naive_concat.8.bcf /tmp/d5I7jei21M/naive_concat.9.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -H
.. ok

test_naive_concat:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools concat --naive /tmp/d5I7jei21M/naive_concat.0.vcf.gz /tmp/d5I7jei21M/naive_concat.1.vcf.gz /tmp/d5I7jei21M/naive_concat.2.vcf.gz /tmp/d5I7jei21M/naive_concat.3.vcf.gz /tmp/d5I7jei21M/naive_concat.4.vcf.gz /tmp/d5I7jei21M/naive_concat.5.vcf.gz /tmp/d5I7jei21M/naive_concat.6.vcf.gz /tmp/d5I7jei21M/naive_concat.7.vcf.gz /tmp/d5I7jei21M/naive_concat.8.vcf.gz /tmp/d5I7jei21M/naive_concat.9.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -H
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools concat --no-version -l  /tmp/d5I7jei21M/concat.4.a.vcf.gz /tmp/d5I7jei21M/concat.4.b.vcf.gz
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools concat -Ob -l  /tmp/d5I7jei21M/concat.4.a.vcf.gz /tmp/d5I7jei21M/concat.4.b.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools concat --no-version -l  /tmp/d5I7jei21M/concat.4.a.bcf /tmp/d5I7jei21M/concat.4.b.bcf
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools concat -Ob -l  /tmp/d5I7jei21M/concat.4.a.bcf /tmp/d5I7jei21M/concat.4.b.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools concat --no-version -l --ligate-warn  /tmp/d5I7jei21M/concat.5.a.vcf.gz /tmp/d5I7jei21M/concat.5.b.vcf.gz /tmp/d5I7jei21M/concat.5.c.vcf.gz
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools concat -Ob -l --ligate-warn  /tmp/d5I7jei21M/concat.5.a.vcf.gz /tmp/d5I7jei21M/concat.5.b.vcf.gz /tmp/d5I7jei21M/concat.5.c.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools concat --no-version -l --ligate-warn  /tmp/d5I7jei21M/concat.5.a.bcf /tmp/d5I7jei21M/concat.5.b.bcf /tmp/d5I7jei21M/concat.5.c.bcf
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools concat -Ob -l --ligate-warn  /tmp/d5I7jei21M/concat.5.a.bcf /tmp/d5I7jei21M/concat.5.b.bcf /tmp/d5I7jei21M/concat.5.c.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools concat --no-version -l --ligate-force  /tmp/d5I7jei21M/concat.5.a.bcf /tmp/d5I7jei21M/concat.5.b.bcf /tmp/d5I7jei21M/concat.5.c.bcf
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools concat -Ob -l --ligate-force  /tmp/d5I7jei21M/concat.5.a.bcf /tmp/d5I7jei21M/concat.5.b.bcf /tmp/d5I7jei21M/concat.5.c.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools concat --no-version -G -a -D  /tmp/d5I7jei21M/concat.5.a.vcf.gz /tmp/d5I7jei21M/concat.5.b.vcf.gz /tmp/d5I7jei21M/concat.5.c.vcf.gz
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools concat -Ob -G -a -D  /tmp/d5I7jei21M/concat.5.a.vcf.gz /tmp/d5I7jei21M/concat.5.b.vcf.gz /tmp/d5I7jei21M/concat.5.c.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools concat --no-version -G -a -D  /tmp/d5I7jei21M/concat.5.a.bcf /tmp/d5I7jei21M/concat.5.b.bcf /tmp/d5I7jei21M/concat.5.c.bcf
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools concat -Ob -G -a -D  /tmp/d5I7jei21M/concat.5.a.bcf /tmp/d5I7jei21M/concat.5.b.bcf /tmp/d5I7jei21M/concat.5.c.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -h /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.hdr /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -h /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.hdr | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -h /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.hdr /tmp/d5I7jei21M/reheader.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /tmp/d5I7jei21M/reheader.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -h /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.hdr | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -h /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.hdr /tmp/d5I7jei21M/reheader.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /tmp/d5I7jei21M/reheader.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -h /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.hdr | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -s /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.samples /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -s /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.samples | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -s /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.samples /tmp/d5I7jei21M/reheader.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /tmp/d5I7jei21M/reheader.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -s /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.samples | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -s /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.samples /tmp/d5I7jei21M/reheader.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /tmp/d5I7jei21M/reheader.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -s /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.samples | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -N /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.samples /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -N /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.samples | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -N /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.samples /tmp/d5I7jei21M/reheader.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /tmp/d5I7jei21M/reheader.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -N /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.samples | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -N /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.samples /tmp/d5I7jei21M/reheader.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /tmp/d5I7jei21M/reheader.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -N /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.samples | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -n AAA,BBB /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -n AAA,BBB | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -n AAA,BBB /tmp/d5I7jei21M/reheader.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /tmp/d5I7jei21M/reheader.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -n AAA,BBB | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -n AAA,BBB /tmp/d5I7jei21M/reheader.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /tmp/d5I7jei21M/reheader.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -n AAA,BBB | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -s /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.samples2 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -s /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.samples2 | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -s /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.samples2 /tmp/d5I7jei21M/reheader.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /tmp/d5I7jei21M/reheader.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -s /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.samples2 | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -s /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.samples2 /tmp/d5I7jei21M/reheader.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /tmp/d5I7jei21M/reheader.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -s /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.samples2 | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -s /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.samples3 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -s /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.samples3 | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -s /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.samples3 /tmp/d5I7jei21M/reheader.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /tmp/d5I7jei21M/reheader.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -s /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.samples3 | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -s /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.samples3 /tmp/d5I7jei21M/reheader.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /tmp/d5I7jei21M/reheader.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -s /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.samples3 | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -s /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.samples4 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -s /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.samples4 | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -s /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.samples4 /tmp/d5I7jei21M/reheader.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /tmp/d5I7jei21M/reheader.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -s /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.samples4 | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -s /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.samples4 /tmp/d5I7jei21M/reheader.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /tmp/d5I7jei21M/reheader.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -s /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.samples4 | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -h /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.empty.hdr /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/empty.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/empty.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -h /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.empty.hdr | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -h /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.empty.hdr /tmp/d5I7jei21M/empty.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /tmp/d5I7jei21M/empty.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -h /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.empty.hdr | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -h /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.empty.hdr /tmp/d5I7jei21M/empty.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /tmp/d5I7jei21M/empty.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -h /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.empty.hdr | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.fai /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.fai /tmp/d5I7jei21M/reheader.2.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.fai /tmp/d5I7jei21M/reheader.2.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -h /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.2.hdr -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.fai /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -h /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.2.hdr -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.fai /tmp/d5I7jei21M/reheader.2.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -h /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.2.hdr -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.fai /tmp/d5I7jei21M/reheader.2.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.3.fai /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.3.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.3.fai /tmp/d5I7jei21M/reheader.3.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools reheader -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/reheader.3.fai /tmp/d5I7jei21M/reheader.3.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_rename_chrs:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate --rename-chrs /tmp/d5I7jei21M/rename.map -Ov /tmp/d5I7jei21M/annotate.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%CHROM\t%POS\n'
.. ok

test_rename_chrs:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate --rename-chrs /tmp/d5I7jei21M/rename.map -Ob /tmp/d5I7jei21M/annotate.bcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%CHROM\t%POS\n'
.. ok

test_rename_chrs:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate --rename-chrs /tmp/d5I7jei21M/rename.map -Ov /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%CHROM\t%POS\n'
.. ok

test_rename_chrs:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools annotate --rename-chrs /tmp/d5I7jei21M/rename.map -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/annotate.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%CHROM\t%POS\n'
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert -g -,. /tmp/d5I7jei21M/convert.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/convert.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert -g -,.
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert -g -,. --vcf-ids /tmp/d5I7jei21M/convert.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/convert.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert -g -,. --vcf-ids
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert -g -,. --vcf-ids --3N6 /tmp/d5I7jei21M/convert.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/convert.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert -g -,. --vcf-ids --3N6
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert -g .,- /tmp/d5I7jei21M/convert.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/convert.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert -g .,-
.. ok

test_vcf_convert_hs2vcf:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert  --vcf-ids -G /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/convert.gs.gt.ids.gen,/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/convert.gs.gt.samples | grep -v ^##
.. ok

test_vcf_convert_hs2vcf:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert  --vcf-ids -G /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/convert.gs.gt.ids.gen,/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/convert.gs.gt.samples -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##
.. ok

test_vcf_convert_hs2vcf:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert -G /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/convert.gs.gt.ids.gen,/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/convert.gs.gt.samples | grep -v ^##
.. ok

test_vcf_convert_hs2vcf:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert -G /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/convert.gs.gt.ids.gen,/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/convert.gs.gt.samples -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##
.. ok

test_vcf_convert_hs2vcf:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert --3N6 -G /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/convert.gs.gt.ids.3N6.gen,/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/convert.gs.gt.samples | grep -v ^##
.. ok

test_vcf_convert_hs2vcf:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert --3N6 -G /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/convert.gs.gt.ids.3N6.gen,/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/convert.gs.gt.samples -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##
.. ok

test_vcf_convert_hs2vcf:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert --vcf-ids -G /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/convert.gs.gt.ids.gen.rev,/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/convert.gs.gt.samples | grep -v ^##
.. ok

test_vcf_convert_hs2vcf:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert --vcf-ids -G /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/convert.gs.gt.ids.gen.rev,/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/convert.gs.gt.samples -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##
.. ok

test_vcf_convert_hs2vcf:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert -G /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/convert.gs.gt.ids.gen.rev,/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/convert.gs.gt.samples | grep -v ^##
.. ok

test_vcf_convert_hs2vcf:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert -G /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/convert.gs.gt.ids.gen.rev,/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/convert.gs.gt.samples -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert -g -,. --tag PL /tmp/d5I7jei21M/convert.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/convert.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert -g -,. --tag PL
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert -g .,- --tag PL /tmp/d5I7jei21M/convert.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/convert.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert -g .,- --tag PL
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert -g -,. --vcf-ids /tmp/d5I7jei21M/check.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/check.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert -g -,. --vcf-ids
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert -g .,- --vcf-ids /tmp/d5I7jei21M/check.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/check.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert -g .,- --vcf-ids
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert -g -,. --3N6 /tmp/d5I7jei21M/check.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/check.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert -g -,. --3N6
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert -g .,- --3N6 /tmp/d5I7jei21M/check.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/check.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert -g .,- --3N6
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert -g -,. --3N6 --vcf-ids /tmp/d5I7jei21M/check.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/check.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert -g -,. --3N6 --vcf-ids
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert -g .,- --3N6 --vcf-ids /tmp/d5I7jei21M/check.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/check.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert -g .,- --3N6 --vcf-ids
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert -h -,.,. /tmp/d5I7jei21M/convert.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/convert.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert -h -,.,.
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert -h .,-,. /tmp/d5I7jei21M/convert.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/convert.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert -h .,-,.
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert -h .,-,. --vcf-ids /tmp/d5I7jei21M/convert.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/convert.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert -h .,-,. --vcf-ids
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert -h .,.,- /tmp/d5I7jei21M/convert.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/convert.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert -h .,.,-
.. ok

test_vcf_convert_hls2vcf:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert -H /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/convert.hls.gt.hap,/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/convert.hls.gt.legend,/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/convert.hls.gt.samples | grep -v ^##
.. ok

test_vcf_convert_hls2vcf:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert -H /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/convert.hls.gt.hap,/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/convert.hls.gt.legend,/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/convert.hls.gt.samples -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert --haplegendsample -,.,. /tmp/d5I7jei21M/convert.hap-missing.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/convert.hap-missing.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert --haplegendsample -,.,.
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert --hapsample -,. /tmp/d5I7jei21M/convert.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/convert.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert --hapsample -,.
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert --hapsample -,. --vcf-ids /tmp/d5I7jei21M/convert.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/convert.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert --hapsample -,. --vcf-ids
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert --hapsample .,- /tmp/d5I7jei21M/convert.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/convert.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert --hapsample .,-
.. ok

test_vcf_convert_hs2vcf:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert --hapsample2vcf /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/convert.hs.gt.hap,/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/convert.hs.gt.samples | grep -v ^##
.. ok

test_vcf_convert_hs2vcf:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert --hapsample2vcf /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/convert.hs.gt.hap,/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/convert.hs.gt.samples -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##
.. ok

test_vcf_convert_hs2vcf:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert --vcf-ids --hapsample2vcf /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/convert.hs.gt.ids.hap,/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/convert.hs.gt.samples | grep -v ^##
.. ok

test_vcf_convert_hs2vcf:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert --vcf-ids --hapsample2vcf /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/convert.hs.gt.ids.hap,/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/convert.hs.gt.samples -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##
.. ok

test_vcf_convert_gvcf:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert --no-version --gvcf2vcf -i'FILTER="PASS"' -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/gvcf.fa /tmp/d5I7jei21M/convert.gvcf.vcf.gz
.. ok

test_vcf_convert_gvcf:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert --no-version --gvcf2vcf -i'FILTER="PASS"' -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/gvcf.fa /tmp/d5I7jei21M/convert.gvcf.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_convert_gvcf:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/convert.gvcf.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert --gvcf2vcf -i'FILTER="PASS"' -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/gvcf.fa | grep -v ^##bcftools
.. ok

test_vcf_convert_gvcf:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert --no-version --gvcf2vcf -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/gvcf.fa /tmp/d5I7jei21M/convert.gvcf.2.vcf.gz
.. ok

test_vcf_convert_gvcf:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert --no-version --gvcf2vcf -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/gvcf.fa /tmp/d5I7jei21M/convert.gvcf.2.vcf.gz -Ou | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view --no-version
.. ok

test_vcf_convert_gvcf:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view -Ob /tmp/d5I7jei21M/convert.gvcf.2.vcf.gz | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert --gvcf2vcf -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/gvcf.fa | grep -v ^##bcftools
.. ok

test_vcf_convert_tsv2vcf:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert --no-version  -c ID,CHROM,POS,AA -s SAMPLE1 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/23andme.fa --tsv2vcf /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/convert.23andme
.. ok

test_vcf_convert_tsv2vcf:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert -Ou  -c ID,CHROM,POS,AA -s SAMPLE1 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/23andme.fa --tsv2vcf /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/convert.23andme | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_convert_tsv2vcf:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert --no-version  -c -,CHROM,POS,REF,ALT -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/23andme.fa --tsv2vcf /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/convert.tsv
.. ok

test_vcf_convert_tsv2vcf:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools convert -Ou  -c -,CHROM,POS,REF,ALT -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/23andme.fa --tsv2vcf /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/convert.tsv | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/consensus.gvcf-missing.1.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.gvcf-missing.fa --missing N  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/consensus.gvcf-missing.1.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.gvcf-missing.fa --missing N  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/consensus.overlaps.1.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.overlaps.2.fa -s A  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/consensus.overlaps.1.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.overlaps.2.fa -s A  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/consensus.overlaps.1.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.overlaps.1.fa -s A  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/consensus.overlaps.1.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.overlaps.1.fa -s A  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/consensus.overlaps.1.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.overlaps.1.fa -s B  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/consensus.overlaps.1.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.overlaps.1.fa -s B  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/consensus.overlaps.1.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.overlaps.1.fa -s A -a N  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/consensus.overlaps.1.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.overlaps.1.fa -s A -a N  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/consensus.overlaps.1.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.overlaps.1.fa -s B -a N  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/consensus.overlaps.1.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.overlaps.1.fa -s B -a N  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/consensus.beyond.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.beyond.fa   
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/consensus.beyond.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.beyond.fa   
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/consensus.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.fa -s - -m /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.tab 
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/consensus.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.fa -s - -m /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.tab 
.. ok

test_vcf_consensus_chain:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/consensus.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.fa -s - -m /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.tab -c /tmp/d5I7jei21M/consensus.1.chain.new >/dev/null; cat /tmp/d5I7jei21M/consensus.1.chain.new
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/consensus.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.fa -H 1 -m /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.tab 
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/consensus.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.fa -H 1 -m /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.tab 
.. ok

test_vcf_consensus_chain:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/consensus.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.fa -H 1 -m /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.tab -c /tmp/d5I7jei21M/consensus.2.chain.new >/dev/null; cat /tmp/d5I7jei21M/consensus.2.chain.new
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/consensus.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.fa -I -s - -m /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.tab 
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/consensus.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.fa -I -s - -m /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.tab 
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/consensus.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.fa -s - -I -m /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.tab --mask-with X -m /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.tab --mask-with lc  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/consensus.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.fa -s - -I -m /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.tab --mask-with X -m /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.tab --mask-with lc  
.. ok

test_vcf_consensus_chain:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/consensus.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.fa -I -m /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.tab -c /tmp/d5I7jei21M/consensus.3.chain.new >/dev/null; cat /tmp/d5I7jei21M/consensus.3.chain.new
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/consensus.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.fa -H 1  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/consensus.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.fa -H 1  
.. ok

test_vcf_consensus_chain:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/consensus.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.fa -H 1  -c /tmp/d5I7jei21M/consensus.4.chain.new >/dev/null; cat /tmp/d5I7jei21M/consensus.4.chain.new
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/consensus2.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus2.fa -H 1  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/consensus2.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus2.fa -H 1  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/consensus2.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus2.fa -H 2  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/consensus2.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus2.fa -H 2  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/empty.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.fa -s -  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/empty.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.fa -s -  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/consensus3.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus2.fa -H 2 -M "?"  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/consensus3.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus2.fa -H 2 -M "?"  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/consensus3.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus2.fa -H 2 -M "?" -p xx_  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/consensus3.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus2.fa -H 2 -M "?" -p xx_  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/consensus4.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus2.fa -s -  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/consensus4.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus2.fa -s -  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/consensus5.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus5.fa --haplotype LA  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/consensus5.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus5.fa --haplotype LA  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/consensus6.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus6.fa -s -  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/consensus6.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus6.fa -s -  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/consensus7.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus7.fa -H 2  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/consensus7.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus7.fa -H 2  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/consensus7.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus7.fa -H 4  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/consensus7.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus7.fa -H 4  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/consensus7.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus7.fa -H 2pIu  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/consensus7.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus7.fa -H 2pIu  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/consensus7.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus7.fa -H 4pIu  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/consensus7.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus7.fa -H 4pIu  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/consensus7.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus7.fa -H 1  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/consensus7.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus7.fa -H 1  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/consensus7.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus7.fa -H 3  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/consensus7.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus7.fa -H 3  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/consensus7.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus7.fa -H 1pIu  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/consensus7.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus7.fa -H 1pIu  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/consensus7.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus7.fa -H 3pIu  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/consensus7.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus7.fa -H 3pIu  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/consensus8.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.fa -s -  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/consensus8.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.fa -s -  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/consensus8.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.fa -s - -a .  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/consensus8.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.fa -s - -a .  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/consensus8.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.fa -s - -a . -i 'type="snp" || type="ref"'  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/consensus8.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.fa -s - -a . -i 'type="snp" || type="ref"'  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/consensus8.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.fa -s - -a . -i 'ALT!="<DEL>"'  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/consensus8.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.fa -s - -a . -i 'ALT!="<DEL>"'  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/consensus8.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.fa -s - -a . -e 'MinDP>15'  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/consensus8.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.fa -s - -a . -e 'MinDP>15'  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/consensus8.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.fa -s - -a . -e 'MinDP<15'  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/consensus8.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.fa -s - -a . -e 'MinDP<15'  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/consensus.9.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.9.1.fa -H A  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/consensus.9.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.9.1.fa -H A  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/consensus.9.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.9.2.fa -H A  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/consensus.9.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.9.2.fa -H A  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/consensus.10.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.9.1.fa -H A  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/consensus.10.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.9.1.fa -H A  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/consensus.10.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.9.2.fa -H A  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/consensus.10.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.9.2.fa -H A  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/consensus.11.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.11.fa -s smpl  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/consensus.11.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.11.fa -s smpl  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/consensus.11.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.11.fa -s smpl -a N  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/consensus.11.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.11.fa -s smpl -a N  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/consensus.12.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.12.fa -s -  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/consensus.12.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.12.fa -s -  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/consensus.13.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.13.fa -s -  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/consensus.13.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.13.fa -s -  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/consensus.14.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.14.fa -s -  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/consensus.14.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.14.fa -s -  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/consensus.12.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.12.fa -s - --mark-del - --mark-ins uc --mark-snv uc  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/consensus.12.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.12.fa -s - --mark-del - --mark-ins uc --mark-snv uc  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/consensus.12.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.12.fa -s - --mark-del - --mark-ins + --mark-snv :  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/consensus.12.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.12.fa -s - --mark-del - --mark-ins + --mark-snv :  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/consensus.15.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.15.fa -H I --mark-ins lc --mark-snv lc  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/consensus.15.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.15.fa -H I --mark-ins lc --mark-snv lc  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/consensus.16.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.fa -s - -I  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/consensus.16.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.fa -s - -I  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/consensus.16.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.fa -H I  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/consensus.16.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.fa -H I  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/consensus.17.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus2.fa -s - -M N -m /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.17.bed 
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/consensus.17.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus2.fa -s - -M N -m /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.17.bed 
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/consensus.18.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.18.fa -s -  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/consensus.18.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.18.fa -s -  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/consensus.19.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.19.fa -s -   
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/consensus.19.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.19.fa -s -   
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/consensus.20.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.20.fa -s -  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/consensus.20.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.20.fa -s -  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/consensus.20.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.20.fa   
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/consensus.20.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.20.fa   
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/consensus.20.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.20.fa -M . -s b  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/consensus.20.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.20.fa -M . -s b  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/consensus.20.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.20.fa -M . -s a  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/consensus.20.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.20.fa -M . -s a  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/consensus.20.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.20.fa -M . -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.20.b.txt  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/consensus.20.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.20.fa -M . -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.20.b.txt  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/consensus.20.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.20.fa -M . -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.20.a.txt  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/consensus.20.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.20.fa -M . -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.20.a.txt  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/consensus.21.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.21.fa   
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/consensus.21.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.21.fa   
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/consensus.22.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.22.fa --regions-overlap 0 --mark-del .  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/consensus.22.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.22.fa --regions-overlap 0 --mark-del .  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/consensus.22.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.22.fa --regions-overlap 1 --mark-del .  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/consensus.22.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.22.fa --regions-overlap 1 --mark-del .  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/consensus.22.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.22.fa --regions-overlap 2 --mark-del .  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/consensus.22.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.22.fa --regions-overlap 2 --mark-del .  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/consensus.22.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.22.fa --regions-overlap 0  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/consensus.22.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.22.fa --regions-overlap 0  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/consensus.22.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.22.fa --regions-overlap 1  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/consensus.22.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.22.fa --regions-overlap 1  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/consensus.22.vcf.gz -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.22.fa --regions-overlap 2  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools consensus /tmp/d5I7jei21M/consensus.22.bcf    -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/consensus.22.fa --regions-overlap 2  
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -r 11:10-20 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/iupac.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/iupac.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -r 11:10-20 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/iupac.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/iupac.bam | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -r17:100-102,17:102-103,17:103-104,17:104-105,17:100-105 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -r17:100-102,17:102-103,17:103-104,17:104-105,17:100-105 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.bam | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -r17:100-102,17:102-103,17:103-104,17:104-105,17:100-105 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -b /tmp/d5I7jei21M/mpileup.bam.list --no-version | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -r17:100-102,17:102-103,17:103-104,17:104-105,17:100-105 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob -b /tmp/d5I7jei21M/mpileup.bam.urllist | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -r17:100-102,17:102-103,17:103-104,17:104-105,17:100-105 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -r17:100-102,17:102-103,17:103-104,17:104-105,17:100-105 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.cram | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -r17:100-102,17:102-103,17:103-104,17:104-105,17:100-105 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -b /tmp/d5I7jei21M/mpileup.cram.list --no-version | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -r17:100-102,17:102-103,17:103-104,17:104-105,17:100-105 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob -b /tmp/d5I7jei21M/mpileup.cram.urllist | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -r17:100-150 -a -AD -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -r17:100-150 -a -AD -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.bam | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -r17:100-150 -a -AD -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -b /tmp/d5I7jei21M/mpileup.bam.list --no-version | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -r17:100-150 -a -AD -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob -b /tmp/d5I7jei21M/mpileup.bam.urllist | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -r17:100-150 -a -AD -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -r17:100-150 -a -AD -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.cram | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -r17:100-150 -a -AD -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -b /tmp/d5I7jei21M/mpileup.cram.list --no-version | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -r17:100-150 -a -AD -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob -b /tmp/d5I7jei21M/mpileup.cram.urllist | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a DP,DV -r17:100-600 -a -AD -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a DP,DV -r17:100-600 -a -AD -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.bam | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a DP,DV -r17:100-600 -a -AD -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a DP,DV -r17:100-600 -a -AD -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.cram | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -B --ff 0x14 -r17:1050-1060 -a -AD -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -B --ff 0x14 -r17:1050-1060 -a -AD -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.bam | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -B --ff 0x14 -r17:1050-1060 -a -AD -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -B --ff 0x14 -r17:1050-1060 -a -AD -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.cram | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a DP,DPR,DV,DP4,INFO/DPR,SP,-AD -r17:100-600 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a DP,DPR,DV,DP4,INFO/DPR,SP,-AD -r17:100-600 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.bam | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a DP,DPR,DV,DP4,INFO/DPR,SP,-AD -r17:100-600 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a DP,DPR,DV,DP4,INFO/DPR,SP,-AD -r17:100-600 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.cram | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a DP,AD,ADF,ADR,SP,INFO/AD,INFO/ADF,INFO/ADR -r17:100-600 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a DP,AD,ADF,ADR,SP,INFO/AD,INFO/ADF,INFO/ADR -r17:100-600 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.bam | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a DP,AD,ADF,ADR,SP,INFO/AD,INFO/ADF,INFO/ADR -r17:100-600 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a DP,AD,ADF,ADR,SP,INFO/AD,INFO/ADF,INFO/ADR -r17:100-600 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.cram | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a DP,DV,-AD -r17:100-600 --gvcf 0,2,5 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a DP,DV,-AD -r17:100-600 --gvcf 0,2,5 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.bam | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a DP,DV,-AD -r17:100-600 --gvcf 0,2,5 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a DP,DV,-AD -r17:100-600 --gvcf 0,2,5 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.cram | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a DP,DV,-AD -r17:100-200,17:201-300,17:301-400,17:401-500,17:501-600 --gvcf 0,2,5 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a DP,DV,-AD -r17:100-200,17:201-300,17:301-400,17:401-500,17:501-600 --gvcf 0,2,5 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.bam | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a DP,DV,-AD -r17:100-200,17:201-300,17:301-400,17:401-500,17:501-600 --gvcf 0,2,5 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a DP,DV,-AD -r17:100-200,17:201-300,17:301-400,17:401-500,17:501-600 --gvcf 0,2,5 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.cram | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -r17:100-150 -s HG00101,HG00102 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -r17:100-150 -s HG00101,HG00102 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.bam | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -r17:100-150 -s HG00101,HG00102 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -r17:100-150 -s HG00101,HG00102 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.cram | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -r17:100-150 -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mplp.samples -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -r17:100-150 -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mplp.samples -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.bam | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -r17:100-150 -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mplp.samples -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -r17:100-150 -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mplp.samples -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.cram | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -r17:100-150 -s ^HG00101,HG00102 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -r17:100-150 -s ^HG00101,HG00102 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.bam | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -r17:100-150 -s ^HG00101,HG00102 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -r17:100-150 -s ^HG00101,HG00102 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.cram | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -r17:100-150 -S ^/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mplp.samples -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -r17:100-150 -S ^/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mplp.samples -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.bam | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -r17:100-150 -S ^/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mplp.samples -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -r17:100-150 -S ^/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mplp.samples -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.cram | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -t17:100-150 -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mplp.9.samples -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.sam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.sam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.sam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -t17:100-150 -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mplp.9.samples -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.sam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.sam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.sam | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -t17:100-150 -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mplp.9.samples -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -t17:100-150 -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mplp.9.samples -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.bam | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -t17:100-150 -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mplp.9.samples -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -t17:100-150 -S /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mplp.9.samples -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.cram | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -t17:100-150 -G /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mplp.10.samples -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.sam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.sam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.sam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -t17:100-150 -G /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mplp.10.samples -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.sam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.sam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.sam | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -t17:100-150 -G /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mplp.10.samples -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -t17:100-150 -G /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mplp.10.samples -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.bam | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -t17:100-150 -G /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mplp.10.samples -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -t17:100-150 -G /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mplp.10.samples -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.cram | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.sam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.sam | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.bam | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.cram | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -s HG00102 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.sam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.4.sam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -s HG00102 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.sam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.4.sam | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -s HG00102 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.4.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -s HG00102 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.4.bam | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -s HG00102 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.4.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -s HG00102 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.4.cram | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -s ^HG99999 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.sam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.4.sam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -s ^HG99999 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.sam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.4.sam | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -s ^HG99999 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.4.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -s ^HG99999 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.4.bam | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -s ^HG99999 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.4.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -s ^HG99999 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.4.cram | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -G /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mplp.11.rgs -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.sam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.4.sam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -G /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mplp.11.rgs -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.sam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.4.sam | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -G /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mplp.11.rgs -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.4.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -G /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mplp.11.rgs -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.4.bam | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -G /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mplp.11.rgs -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.4.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -G /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mplp.11.rgs -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.4.cram | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -G /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mplp.11.rgs -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.sam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.4.sam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -G /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mplp.11.rgs -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.sam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.4.sam | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -G /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mplp.11.rgs -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.4.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -G /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mplp.11.rgs -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.4.bam | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -G /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mplp.11.rgs -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.4.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -G /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mplp.11.rgs -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.3.cram /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup.4.cram | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a AD -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.1.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.1.sam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a AD -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.1.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.1.sam | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a AD -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.1.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.1.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a AD -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.1.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.1.bam | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a AD -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.1.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.1.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a AD -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.1.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.1.cram | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a AD --indels-cns -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.1.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.1.sam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a AD --indels-cns -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.1.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.1.sam | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a AD --indels-cns -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.1.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.1.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a AD --indels-cns -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.1.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.1.bam | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a AD --indels-cns -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.1.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.1.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a AD --indels-cns -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.1.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.1.cram | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a AD -r 11:75 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.2.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.2.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a AD -r 11:75 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.2.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.2.bam | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a AD -r 11:75 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.2.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.2.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a AD -r 11:75 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.2.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.2.cram | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a AD -r 11:75 --ambig-reads incAD -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.2.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.2.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a AD -r 11:75 --ambig-reads incAD -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.2.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.2.bam | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a AD -r 11:75 --ambig-reads incAD -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.2.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.2.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a AD -r 11:75 --ambig-reads incAD -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.2.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.2.cram | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a AD -r 11:75 --ambig-reads incAD0 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.2.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.2.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a AD -r 11:75 --ambig-reads incAD0 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.2.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.2.bam | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a AD -r 11:75 --ambig-reads incAD0 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.2.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.2.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a AD -r 11:75 --ambig-reads incAD0 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.2.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/indel-AD.2.cram | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD,INFO/SCR,FMT/SCR -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup-SCR.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup-SCR.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD,INFO/SCR,FMT/SCR -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup-SCR.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup-SCR.bam | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD,INFO/SCR,FMT/SCR -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup-SCR.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup-SCR.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD,INFO/SCR,FMT/SCR -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup-SCR.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup-SCR.cram | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -t 1:100 --skip-all-set PAIRED,PROPER_PAIR,MREVERSE -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup-SCR.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup-filter.sam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -t 1:100 --skip-all-set PAIRED,PROPER_PAIR,MREVERSE -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup-SCR.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup-filter.sam | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -t 1:100 --skip-any-set READ1 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup-SCR.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup-filter.sam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -t 1:100 --skip-any-set READ1 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup-SCR.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup-filter.sam | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -t 1:100 --skip-all-unset READ1 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup-SCR.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup-filter.sam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -t 1:100 --skip-all-unset READ1 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup-SCR.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup-filter.sam | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -t 1:100 --skip-any-unset READ1 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup-SCR.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup-filter.sam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD -t 1:100 --skip-any-unset READ1 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup-SCR.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/mpileup-filter.sam | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD,INFO/NMBZ -r chr19:69-99 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/annot-NMBZ.1.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/annot-NMBZ.1.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD,INFO/NMBZ -r chr19:69-99 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/annot-NMBZ.1.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/annot-NMBZ.1.bam | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD,INFO/NMBZ -r chr6:75 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/annot-NMBZ.2.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/annot-NMBZ.2.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD,INFO/NMBZ -r chr6:75 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/annot-NMBZ.2.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/annot-NMBZ.2.bam | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD,INFO/NMBZ -r chr16:75 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/annot-NMBZ.3.fa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/annot-NMBZ.3.1.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/annot-NMBZ.3.2.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools mpileup -a -AD,INFO/NMBZ -r chr16:75 -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/annot-NMBZ.3.fa -Ob /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/annot-NMBZ.3.1.bam /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/mpileup/annot-NMBZ.3.2.bam | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_csq:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.greedy.1.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.greedy.1.gff -pa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.greedy.1.vcf | grep -v ^#
.. ok

test_csq:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.greedy.1.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.greedy.1.gff -pa -G1 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.greedy.1.vcf | grep -v ^#
.. ok

test_csq:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.greedy.1.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.greedy.1.gff -pa -Ot /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.greedy.1.vcf | grep -v ^#
.. ok

test_csq:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.greedy.1.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.greedy.1.gff -pa -Ot -G1 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.greedy.1.vcf | grep -v ^#
.. ok

test_csq:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.greedy.2.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.greedy.2.gff -pa /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.greedy.2.vcf | grep -v ^#
.. ok

test_csq:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.greedy.2.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.greedy.2.gff -pa -G1 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.greedy.2.vcf | grep -v ^#
.. ok

test_csq:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.greedy.2.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.greedy.2.gff -pa -Ot /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.greedy.2.vcf | grep -v ^#
.. ok

test_csq:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.greedy.2.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.greedy.2.gff -pa -Ot -G1 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.greedy.2.vcf | grep -v ^#
.. ok

test_csq:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.ismpl.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.ismpl.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.ismpl.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%SAMPLE %GT %BCSQ %TBCSQ\n]'
.. ok

test_csq:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.splice.issue-2543.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.splice.issue-2543.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.splice.issue-2543.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.oob-codon.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.oob-codon.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.oob-codon.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.gff3 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.chr.gff3 --unify-chr-names -,chr,- /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.2.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%TBCSQ\n]' | perl -pe 's/[\t,]/\n/g' | sort
.. ok

test_csq:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.2.gff --ncsq 64 /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%TBCSQ\n]' | perl -pe 's/[\t,]/\n/g' | sort
.. ok

test_csq:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.nchr.gff -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.nchr.fa --unify-chr-names -,-,- /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.nchr.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%TBCSQ\n]' | perl -pe 's/[\t,]/\n/g' | sort
.. ok

test_csq:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.nchr.gff -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.ychr.fa --unify-chr-names -,-,chr /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.nchr.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%TBCSQ\n]' | perl -pe 's/[\t,]/\n/g' | sort
.. ok

test_csq:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.ychr.gff -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.nchr.fa --unify-chr-names -,chr,- /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.nchr.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%TBCSQ\n]' | perl -pe 's/[\t,]/\n/g' | sort
.. ok

test_csq:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.ychr.gff -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.ychr.fa --unify-chr-names -,chr,chr /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.nchr.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%TBCSQ\n]' | perl -pe 's/[\t,]/\n/g' | sort
.. ok

test_csq:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.ychr.gff -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.ychr.fa --unify-chr-names chr,chr,chr /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.ychr.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%TBCSQ\n]' | perl -pe 's/[\t,]/\n/g' | sort
.. ok

test_csq:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.nchr.gff -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.ychr.fa --unify-chr-names chr,-,chr /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.ychr.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%TBCSQ\n]' | perl -pe 's/[\t,]/\n/g' | sort
.. ok

test_csq:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.ychr.gff -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.nchr.fa --unify-chr-names chr,chr,- /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.ychr.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%TBCSQ\n]' | perl -pe 's/[\t,]/\n/g' | sort
.. ok

test_csq:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.nchr.gff -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.nchr.fa --unify-chr-names chr,-,- /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.ychr.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%TBCSQ\n]' | perl -pe 's/[\t,]/\n/g' | sort
.. ok

test_csq:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.nchr.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.ychr.gff --unify-chr-names Chromosome,chr,- /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq.yychr.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%TBCSQ\n]' | perl -pe 's/[\t,]/\n/g' | sort
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000303039/ENST00000303039.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000303039/ENST00000303039.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000303039/not-a-stop.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000303039/ENST00000303039.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000303039/ENST00000303039.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000303039/not-a-stop.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000593942/ENST00000593942.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000593942/ENST00000593942.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000593942/last-codon-deletion.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000528237/ENST00000528237.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000528237/ENST00000528237.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000528237/retained-stop-incomplete-cds.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	cd /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000422159 && /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f ENST00000422159.fa -g ENST00000422159.gff multiallelic.vcf  | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS\t%REF\t%ALT\t%GT\t%TBCSQ\n]' | ../sort-csq -q ; echo ; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f ENST00000422159.fa -g short.gff multiallelic.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS\t%REF\t%ALT\t%GT\t%TBCSQ\n]' | ../sort-csq -q
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000390520/ENST00000390520.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000390520/ENST00000390520.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000390520/deletion-overlap.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000543077/ENST00000543077.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000543077/ENST00000543077.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000543077/not-a-start-lost.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000543077/ENST00000543077.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000543077/ENST00000543077.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000543077/not-a-start-lost.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	cd /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/EMN908947 && /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f EMN908947.fa -g ribosomal-slippage.gff ribosomal-slippage.vcf --force | ../sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	cd /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/EMN908947 && /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f EMN908947.fa -g simple.gff simple.vcf | ../sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	cd /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000379416 && /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -B 3 -f ENST00000379416.fa -g ENST00000379416.gff compound.del-snp.vcf       | ../sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' ; echo ; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -B 3 -f ENST00000379416.fa -g ENST00000379416.gff compound.ins-del.vcf       | ../sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' ; echo ; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -B 3 -f ENST00000379416.fa -g ENST00000379416.gff compound.ins-ins.vcf       | ../sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' ; echo ; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -B 3 -f ENST00000379416.fa -g ENST00000379416.gff compound.ins-snp.vcf       | ../sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' ; echo ; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -B 3 -f ENST00000379416.fa -g ENST00000379416.gff single.vcf                 | ../sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000301246/ENST00000301246.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000301246/ENST00000301246.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000301246/15bp-insert.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000295641/ENST00000295641.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000295641/ENST00000295641.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000295641/not-a-start-lost.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000295641/ENST00000295641.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000295641/ENST00000295641.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000295641/not-a-start-lost.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000518414-ENST00000521270/ENST00000518414-ENST00000521270.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000518414-ENST00000521270/ENST00000518414-ENST00000521270.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000518414-ENST00000521270/valgrind.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000571540/ENST00000571540.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000571540/ENST00000571540.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000571540/nmd.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000285021/ENST00000285021.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000285021/ENST00000285021.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000285021/stop-gained-inframe-indel.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000479739/ENST00000479739.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000479739/ENST00000479739.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000479739/short-cds-start-lost.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000479739/ENST00000479739.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000479739/ENST00000479739.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000479739/short-cds-start-lost.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000357367/ENST00000357367.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000357367/ENST00000357367.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000357367/stop-retained.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000230048/ENST00000230048.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000230048/ENST00000230048.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000230048/start-del.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000542803/ENST00000542803.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000542803/ENST00000542803.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000542803/splice-region.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000542803/ENST00000542803.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000542803/ENST00000542803.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000542803/splice-region.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/splice-acceptor-donor3.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/splice-acceptor-donor3.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/splice-acceptor-donor9.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/splice-acceptor-donor9.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/frame2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/frame2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/splice-acceptor-donor1.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/splice-acceptor-donor1.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/not-a-start-lost.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/not-a-start-lost.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/splice-acceptor-donor5.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/splice-acceptor-donor5.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/splice-acceptor-donor8.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/splice-acceptor-donor8.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/frame1.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/frame1.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/splice-acceptor-donor6.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/splice-acceptor-donor6.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/splice-acceptor-donor2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/splice-acceptor-donor2.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/frame3.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/frame3.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/splice-acceptor-donor7.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/splice-acceptor-donor7.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/splice-acceptor-donor4.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000341065/splice-acceptor-donor4.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	cd /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000368801.2 && /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f ENST00000368801.2.fa -g ENST00000368801.2.gff alt-gencode.vcf -v 0 -C 0 | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%BCSQ\n' | ../sort-csq -q
.. ok

test_csq_real:
	cd /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000368801.2 && /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f ENST00000368801.2.fa -g ENST00000368801.2.gff alt-gencode.vcf -v 0 -C 1 | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%BCSQ\n' | ../sort-csq -q
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000368801.2/ENST00000368801.2.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000368801.2/ENST00000368801.2.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000368801.2/start-lost.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000518414/ENST00000518414.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000518414/ENST00000518414.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000518414/incorrect-inframe-del.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000382647/ENST00000382647.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000382647/ENST00000382647.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000382647/synon-splice-region-insert.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/EDUMMY0001/EDUMMY0001.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/EDUMMY0001/EDUMMY0001.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/EDUMMY0001/starts-with-1.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/EDUMMY0001/EDUMMY0001.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/EDUMMY0001/EDUMMY0001.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/EDUMMY0001/starts-with-1.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	cd /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000000001 && /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f ENST00000000001.fa -g ENST00000000001.gff test.vcf -p a -Ot | grep -v ^#
.. ok

test_csq_real:
	cd /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000000001 && /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f ENST00000000001.fa -g ENST00000000001.gff test.vcf -p a | ../sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000400151/ENST00000400151.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000400151/ENST00000400151.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000400151/long-del.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	cd /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000580206 && /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f ENST00000580206.fa -g ENST00000580206.gff compound.ins-snv.vcf  | ../sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' ; echo ; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f ENST00000580206.fa -g short.gff compound.ins-snv.vcf  | ../sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' ; echo ; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f ENST00000580206.fa -g ENST00000580206.gff single.ins-snv.vcf  | ../sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' ; echo ; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f ENST00000580206.fa -g short.gff single.ins-snv.vcf  | ../sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' ; echo ; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f ENST00000580206.fa -g ENST00000580206.gff compound.del-snv.vcf  | ../sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' ; echo ; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f ENST00000580206.fa -g short.gff compound.del-snv.vcf  | ../sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' ; echo ; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f ENST00000580206.fa -g short.gff single.del-snv.vcf  | ../sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' ; echo ; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f ENST00000580206.fa -g ENST00000580206.gff compound.del-ins.vcf  | ../sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' ; echo ; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f ENST00000580206.fa -g short.gff compound.del-ins.vcf  | ../sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' ; echo ; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f ENST00000580206.fa -g short.gff single.del-ins.vcf  | ../sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000520795/ENST00000520795.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000520795/ENST00000520795.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000520795/long-inside-del.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000520795/ENST00000520795.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000520795/ENST00000520795.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000520795/long-inside-del.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000519442/ENST00000519442.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000519442/ENST00000519442.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000519442/synon-splice-region-del.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000420190/ENST00000420190.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000420190/ENST00000420190.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000420190/abort-in-csq-push.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS\t%REF\t%ALT\t%TBCSQ\n]\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000557788/ENST00000557788.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000557788/ENST00000557788.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000557788/long-overlap-del.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/EDUMMY0003/EDUMMY0003.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/EDUMMY0003/EDUMMY0003.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/EDUMMY0003/long-del.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	cd /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENSMUST00000133836 && /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f ENSMUST00000133836.fa -g ENSMUST00000133836.gff filter-problem.vcf -i 'FILTER="PASS"' --phase m | ../sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000436063/ENST00000436063.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000436063/ENST00000436063.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000436063/insert-before-utr.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000375992/ENST00000375992.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000375992/ENST00000375992.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000375992/incorrect-synon-del-not-start-lost.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000318249.2/ENST00000318249.2.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000318249.2/ENST00000318249.2.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000318249.2/synonymous-start-lost.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	cd /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENSMUST00000121418 && /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f ENSMUST00000121418.fa -g ENSMUST00000121418.gff filter-problem.vcf -i 'POS!=25500' --phase m | ../sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n'
.. ok

test_csq_real:
	cd /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENSMUST00000121418 && /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f ENSMUST00000121418.fa -g ENSMUST00000121418.gff filter-problem.vcf -i 'POS!=25496' --phase m | ../sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n'
.. ok

test_csq_real:
	cd /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENSMUST00000121418 && /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f ENSMUST00000121418.fa -g ENSMUST00000121418.gff filter-problem.vcf -i 'POS!=25105' --phase m | ../sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/EDUMMY0002/EDUMMY0002.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/EDUMMY0002/EDUMMY0002.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/EDUMMY0002/boundaries.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000269081/ENST00000269081.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000269081/ENST00000269081.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000269081/stop-gained-not-inframe-insertion.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000271583/ENST00000271583.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000271583/ENST00000271583.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000271583/splice-acceptor.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000294661/ENST00000294661.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000294661/ENST00000294661.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000294661/non-coding-boundary.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000294661/ENST00000294661.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000294661/ENST00000294661.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000294661/non-coding-boundary.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000256452/ENST00000256452.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000256452/ENST00000256452.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000256452/intron.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENSCAFT00000047742/ENSCAFT00000047742.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENSCAFT00000047742/ENSCAFT00000047742.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENSCAFT00000047742/test.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000573035-bt2212/ENST00000573035-bt2212.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000573035-bt2212/ENST00000573035-bt2212.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000573035-bt2212/complex-event.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000227471/ENST00000227471.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000227471/ENST00000227471.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000227471/insert-splice-vs-frameshift.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000373833/ENST00000373833.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000373833/ENST00000373833.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000373833/boundary-insertion.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000373833/ENST00000373833.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000373833/ENST00000373833.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000373833/boundary-insertion.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000318249/ENST00000318249.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000318249/ENST00000318249.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000318249/start-lost.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000318249/ENST00000318249.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000318249/ENST00000318249.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000318249/start-lost.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000624631/ENST00000624631.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000624631/ENST00000624631.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000624631/ambiguous.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	cd /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000410009 && /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -b -f ENST00000410009.fa -g ENST00000410009.gff frameshift.vcf | ../sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n'
.. ok

test_csq_real:
	cd /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000410009 && /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -B 5 -f ENST00000410009.fa -g ENST00000410009.gff frameshift.vcf | ../sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n'
.. ok

test_csq_real:
	cd /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000410009 && /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -lb -f ENST00000410009.fa -g ENST00000410009.gff frameshift.vcf | ../sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000410009/ENST00000410009.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000410009/ENST00000410009.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000410009/frameshift.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000360372/ENST00000360372.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000360372/ENST00000360372.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000360372/mnp.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000409523/ENST00000409523.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000409523/ENST00000409523.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000409523/long-overlapping-del.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000218032/ENST00000218032.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000218032/ENST00000218032.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000218032/start-lost-del.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000218032/ENST00000218032.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000218032/ENST00000218032.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000218032/start-lost.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000218032/ENST00000218032.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000218032/ENST00000218032.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000218032/start-lost.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000423372/ENST00000423372.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000423372/ENST00000423372.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000423372/snps.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000423372/ENST00000423372.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000423372/ENST00000423372.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000423372/snps.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000423372/ENST00000423372.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000423372/ENST00000423372.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000423372/insert3.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000423372/ENST00000423372.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000423372/ENST00000423372.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000423372/insert3.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000545279/ENST00000545279.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000545279/ENST00000545279.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000545279/splice-region-insert.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000420670/ENST00000420670.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000420670/ENST00000420670.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000420670/start-stop-lost.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000420670/ENST00000420670.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000420670/ENST00000420670.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000420670/segfault.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000381157/ENST00000381157.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000381157/ENST00000381157.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000381157/haploid-diploid.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS\t%REF\t%ALT\t%TBCSQ\n]\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000520868/ENST00000520868.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000520868/ENST00000520868.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000520868/long-deletion.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000573314/ENST00000573314.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000573314/ENST00000573314.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000573314/incorrect-insertion-overlap.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000573314/ENST00000573314.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000573314/ENST00000573314.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000573314/incorrect-insertion-overlap.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000368801/ENST00000368801.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000368801/ENST00000368801.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000368801/compound-lost.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000448695/ENST00000448695.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000448695/ENST00000448695.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000448695/syn-and-splice-reg.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000378322/ENST00000378322.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000378322/ENST00000378322.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000378322/end-overlap-tscript.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000378322/ENST00000378322.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000378322/ENST00000378322.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000378322/end-overlap-tscript.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000329454/ENST00000329454.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000329454/ENST00000329454.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000329454/boundary-deletion.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000329454/ENST00000329454.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000329454/ENST00000329454.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000329454/boundary-deletion.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENSG00000173376/ENSG00000173376.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENSG00000173376/ENSG00000173376.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENSG00000173376/synon.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000413103/ENST00000413103.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000413103/ENST00000413103.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000413103/long-deletion.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000536784/ENST00000536784.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000536784/ENST00000536784.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000536784/not-a-start-lost.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000536784/ENST00000536784.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000536784/ENST00000536784.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000536784/not-a-start-lost.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	cd /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000000000 && /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -p a -f ENST00000000000.fa -g ENST00000000000.gff upstream-stop.vcf  | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'[%POS\t%REF\t%ALT\t%SAMPLE\t%GT\t%TBCSQ\n]' | ../sort-csq -q
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools csq -f /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000263103-INS/ENST00000263103-INS.fa -g /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000263103-INS/ENST00000263103-INS.gff /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/ENST00000263103-INS/insertions.vcf | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_roh:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools roh /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/roh.1.vcf.gz -Or -G30 --AF-dflt 0.4| grep -v ^#
.. ok

test_roh:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools roh /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/roh.1.vcf.gz -Or -G30 --AF-file /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/roh.1.tab.gz| grep -v ^#
.. ok

test_roh:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools roh /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/roh.1.vcf.gz -Or -G30 --AF-file /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/roh.1.tab.gz --ignore-homref| grep -v ^#
.. ok

test_roh:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools roh /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/roh.1.vcf.gz     -G30 --AF-dflt 0.4 -r 1:100174876-100318245| grep -v ^#
.. ok

test_roh:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools roh /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/roh.1.vcf.gz     -G30 --AF-dflt 0.4 -r 1:100174876-100318245 --ignore-homref| grep -v ^#
.. ok

test_roh:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools roh /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/roh.1.vcf.gz     -G30 --AF-dflt 0.4 -r 1:100174876-100318245 --ignore-homref --include-noalt| grep -v ^#
.. ok

test_roh:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools roh /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/roh.1.vcf.gz     -G30 --AF-dflt 0.4 -r 1:100174876-100318245 --include-noalt| grep -v ^#
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools gtcheck --keep-refs /tmp/d5I7jei21M/gtcheck.gvcf.a.vcf.gz -g /tmp/d5I7jei21M/gtcheck.gvcf.b.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools gtcheck --keep-refs /tmp/d5I7jei21M/gtcheck.gvcf.b.vcf.gz -g /tmp/d5I7jei21M/gtcheck.gvcf.a.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools gtcheck  /tmp/d5I7jei21M/gtcheck.gvcf.a.vcf.gz -g /tmp/d5I7jei21M/gtcheck.gvcf.b.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools gtcheck  /tmp/d5I7jei21M/gtcheck.gvcf.b.vcf.gz -g /tmp/d5I7jei21M/gtcheck.gvcf.a.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools gtcheck -e 0 --no-HWE-prob /tmp/d5I7jei21M/gtcheck.1.vcf.gz -g /tmp/d5I7jei21M/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools gtcheck -e 0 /tmp/d5I7jei21M/gtcheck.1.vcf.gz -g /tmp/d5I7jei21M/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools gtcheck -e 0 -u GT,GT /tmp/d5I7jei21M/gtcheck.1.vcf.gz -g /tmp/d5I7jei21M/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools gtcheck -e 0 -u GT,PL /tmp/d5I7jei21M/gtcheck.1.vcf.gz -g /tmp/d5I7jei21M/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools gtcheck -e 0 -u PL,GT /tmp/d5I7jei21M/gtcheck.1.vcf.gz -g /tmp/d5I7jei21M/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools gtcheck -e 0 -u PL,PL /tmp/d5I7jei21M/gtcheck.1.vcf.gz -g /tmp/d5I7jei21M/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools gtcheck -e 0 -p s1,s1 /tmp/d5I7jei21M/gtcheck.1.vcf.gz -g /tmp/d5I7jei21M/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools gtcheck -e 0 /tmp/d5I7jei21M/gtcheck.2.vcf.gz -g /tmp/d5I7jei21M/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools gtcheck -e 0  /tmp/d5I7jei21M/gtcheck.3.vcf.gz  | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools gtcheck -e 0 -p B,A,C,A,C,B,D,A,D,B,D,C,E,A,E,B,E,C,E,D /tmp/d5I7jei21M/gtcheck.3.vcf.gz  | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools gtcheck -e 0 -P /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/gtcheck.3.pairs /tmp/d5I7jei21M/gtcheck.3.vcf.gz  | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools gtcheck -e 0 -u PL /tmp/d5I7jei21M/gtcheck.3.vcf.gz  | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools gtcheck -e 0 --n-matches 4 /tmp/d5I7jei21M/gtcheck.3.vcf.gz  | grep -v ^# | grep -v ^INFO  | sort
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools gtcheck -e 0 -s qry:E,D,C /tmp/d5I7jei21M/gtcheck.3.vcf.gz  | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools gtcheck -e 0 -s qry:E,D,C -u PL /tmp/d5I7jei21M/gtcheck.3.vcf.gz  | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools gtcheck -e 0 -s qry:B -s gt:D /tmp/d5I7jei21M/gtcheck.3.vcf.gz  | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools gtcheck -e 0 -s qry:B -s gt:D -u PL /tmp/d5I7jei21M/gtcheck.3.vcf.gz  | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools gtcheck -e 0 -s qry:B -s gt:D,C /tmp/d5I7jei21M/gtcheck.3.vcf.gz  | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools gtcheck -e 0 -p B,C,B,D /tmp/d5I7jei21M/gtcheck.3.vcf.gz  | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools gtcheck -e 0 -u GT,GT -H /tmp/d5I7jei21M/gtcheck.1.vcf.gz -g /tmp/d5I7jei21M/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools gtcheck -e 0 -u GT,PL -H /tmp/d5I7jei21M/gtcheck.1.vcf.gz -g /tmp/d5I7jei21M/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools gtcheck -e 0 -u PL,GT -H /tmp/d5I7jei21M/gtcheck.1.vcf.gz -g /tmp/d5I7jei21M/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools gtcheck -e 0 -u PL,PL -H /tmp/d5I7jei21M/gtcheck.1.vcf.gz -g /tmp/d5I7jei21M/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools gtcheck -e 0 -P /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/gtcheck.4.pairs --distinctive-sites 3 /tmp/d5I7jei21M/gtcheck.4.vcf.gz  | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools gtcheck -e 0 -P /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/test/gtcheck.4.pairs --distinctive-sites 3,1 /tmp/d5I7jei21M/gtcheck.4.vcf.gz  | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools gtcheck -u GT -e 30 /tmp/d5I7jei21M/gtcheck.1.vcf.gz -g /tmp/d5I7jei21M/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools gtcheck -u GT -e 30 -p s1,s1 /tmp/d5I7jei21M/gtcheck.1.vcf.gz -g /tmp/d5I7jei21M/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools gtcheck -u GT -e 300 /tmp/d5I7jei21M/gtcheck.1.vcf.gz -g /tmp/d5I7jei21M/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools gtcheck -u PL -e 30 /tmp/d5I7jei21M/gtcheck.3.vcf.gz  | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools gtcheck  /tmp/d5I7jei21M/gtcheck.ntop.vcf.gz -g /tmp/d5I7jei21M/gtcheck.ntop.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools gtcheck --n-matches 2 /tmp/d5I7jei21M/gtcheck.ntop.vcf.gz -g /tmp/d5I7jei21M/gtcheck.ntop.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools gtcheck  /tmp/d5I7jei21M/gtcheck.5.vcf.gz -g /tmp/d5I7jei21M/gtcheck.5.gts.vcf.gz | grep -v ^# | grep -v Time
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools gtcheck -p A,B,B,C /tmp/d5I7jei21M/gtcheck.6.vcf.gz  | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools gtcheck -t 11:33 -p A,D,A,E,D,E -u GT -e 10 /tmp/d5I7jei21M/gtcheck.3.vcf.gz  | grep -v ^# | grep -v ^INFO 
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +vcf2table /tmp/d5I7jei21M/merge.4.b.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +vcf2table /tmp/d5I7jei21M/merge.4.b.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +vcf2table /tmp/d5I7jei21M/split-vep.2.vcf.gz  -- --hide 'INFO,URL' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	export BCFTOOLS_PLUGINS=/builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/plugins; /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/bcftools +vcf2table /tmp/d5I7jei21M/split-vep.2.bcf  -- --hide 'INFO,URL' | grep -v ^##bcftools_
.. ok


Number of tests:
    total   .. 2483
    passed  .. 2483
    failed  .. 0

+ RPM_EC=0
++ jobs -p
+ exit 0
Processing files: bcftools-1.24-2.fc46.aarch64
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.H5KuD0
+ umask 022
+ cd /builddir/build/BUILD/bcftools-1.24-build
+ cd bcftools-1.24
+ DOCDIR=/builddir/build/BUILD/bcftools-1.24-build/BUILDROOT/usr/share/doc/bcftools
+ export LC_ALL=C.UTF-8
+ LC_ALL=C.UTF-8
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILD/bcftools-1.24-build/BUILDROOT/usr/share/doc/bcftools
+ cp -pr /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/AUTHORS /builddir/build/BUILD/bcftools-1.24-build/BUILDROOT/usr/share/doc/bcftools
+ cp -pr /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/NEWS /builddir/build/BUILD/bcftools-1.24-build/BUILDROOT/usr/share/doc/bcftools
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.TWEEAF
+ umask 022
+ cd /builddir/build/BUILD/bcftools-1.24-build
+ cd bcftools-1.24
+ LICENSEDIR=/builddir/build/BUILD/bcftools-1.24-build/BUILDROOT/usr/share/licenses/bcftools
+ export LC_ALL=C.UTF-8
+ LC_ALL=C.UTF-8
+ export LICENSEDIR
+ /usr/bin/mkdir -p /builddir/build/BUILD/bcftools-1.24-build/BUILDROOT/usr/share/licenses/bcftools
+ cp -pr /builddir/build/BUILD/bcftools-1.24-build/bcftools-1.24/LICENSE /builddir/build/BUILD/bcftools-1.24-build/BUILDROOT/usr/share/licenses/bcftools
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: bcftools = 1.24-2.fc46 bcftools(aarch-64) = 1.24-2.fc46
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: /usr/bin/perl /usr/bin/python3 ld-linux-aarch64.so.1()(64bit) ld-linux-aarch64.so.1(GLIBC_2.17)(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.17)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libgsl.so.28()(64bit) libgslcblas.so.0()(64bit) libhts.so.3()(64bit) libhts.so.3(HTSLIB_1.0)(64bit) libhts.so.3(HTSLIB_1.1)(64bit) libhts.so.3(HTSLIB_1.10)(64bit) libhts.so.3(HTSLIB_1.13)(64bit) libhts.so.3(HTSLIB_1.16)(64bit) libhts.so.3(HTSLIB_1.17)(64bit) libhts.so.3(HTSLIB_1.2.1)(64bit) libhts.so.3(HTSLIB_1.22)(64bit) libhts.so.3(HTSLIB_1.24)(64bit) libhts.so.3(HTSLIB_1.3)(64bit) libhts.so.3(HTSLIB_1.4)(64bit) libhts.so.3(HTSLIB_1.5)(64bit) libhts.so.3(HTSLIB_1.6)(64bit) libhts.so.3(HTSLIB_1.7)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.17)(64bit) libm.so.6(GLIBC_2.23)(64bit) libm.so.6(GLIBC_2.29)(64bit) libm.so.6(GLIBC_2.43)(64bit) libperl.so.5.44()(64bit) rtld(GNU_HASH)
Conflicts: samtools < 1.0
Processing files: bcftools-debugsource-1.24-2.fc46.aarch64
Provides: bcftools-debugsource = 1.24-2.fc46 bcftools-debugsource(aarch-64) = 1.24-2.fc46
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: bcftools-debuginfo-1.24-2.fc46.aarch64
Provides: bcftools-debuginfo = 1.24-2.fc46 bcftools-debuginfo(aarch-64) = 1.24-2.fc46 debuginfo(build-id) = 0f5b5635404bcc20c9e3b8005852177c60e26800 debuginfo(build-id) = 14e0a2ee615df190116c7eff538d4ca46c33305b debuginfo(build-id) = 172a86c3bf1090eb4e09a4439c6efd755728392e debuginfo(build-id) = 202bebadd1344fe114483c769a555bac0b36272b debuginfo(build-id) = 22cd55b36988466fe30fc905f0d4f9c86bed129b debuginfo(build-id) = 2988aea3f97850716a725b93924231bad609cd9a debuginfo(build-id) = 2a656aceb9429995c0559cf1101d366d97bd2326 debuginfo(build-id) = 3338bc75109b633af45475e2cdbb2d88d182cfc6 debuginfo(build-id) = 364779dc0a6e33bd9a321826c2197b1f005a12e5 debuginfo(build-id) = 3ce216256b9aa3fe8a09cf2fb6f8ab20ed3eb2c8 debuginfo(build-id) = 3f542f7bf8e88781f1e6c42fbfc7c9cc4d8a14b3 debuginfo(build-id) = 3fb71af45a8baab36e9b769b70c050c4e57c5b5a debuginfo(build-id) = 40e2d714ddbc52c978c11cab391a27946c86dc2c debuginfo(build-id) = 42581d3b4c3b6b71757ea7a10361383a36afdc0c debuginfo(build-id) = 450c34af52677a7441fd9e82c13220679b37e231 debuginfo(build-id) = 54cea52a280178543add3ff4ff65bdb4283665aa debuginfo(build-id) = 567eff82590d42be7017ba5ae4bb13af07df1dfa debuginfo(build-id) = 5916c27f8838777314e95d737e7eb9b9da0eb32a debuginfo(build-id) = 62e7acfb385a7518e24c839373998a710a348f5d debuginfo(build-id) = 65f5e398e025731b05a521803691afe881e19e7a debuginfo(build-id) = 71e28e68f6ad82536da9207a38a562a429d6347c debuginfo(build-id) = 73a29e54c4fc3cccbbd651532862d87675eb173f debuginfo(build-id) = 847e3078581a353e319fbe7db5ac74bebca287f2 debuginfo(build-id) = a18390ccac34dc01418e3beff774a483ca2c10f7 debuginfo(build-id) = ac07c0181afc6a11aa03ff77a2fb2c13ed4c4bbb debuginfo(build-id) = b78844d58dd23b3269322d25dd3b17b2e9e0ac50 debuginfo(build-id) = c1f44d21d671f6a4fe97438b8f7b60f06a37b967 debuginfo(build-id) = c589a1af5f3711504b515441e13a6df506569f53 debuginfo(build-id) = d5935b1806dac4565f1e1fe5ba61e6186cb913af debuginfo(build-id) = d64f624cf25e0cc5d8336f4db607029da33eead4 debuginfo(build-id) = da5b5ec29478169030c7e6fe9b952355f2ecf71b debuginfo(build-id) = db416789151c1213a882e025331f0c3abaef056e debuginfo(build-id) = ddc91d852fba2f2720aa4937ec2257145575fb26 debuginfo(build-id) = def3789926175864009e1e3326086e4db5c9f0c3 debuginfo(build-id) = e3b7efd56d7adef7c35d371948c202d356b4f164 debuginfo(build-id) = e5cfda8b2970164c9d5d534bc472888b12461291 debuginfo(build-id) = e888880d75cb39ab9c469fa100b328a0217ed46a debuginfo(build-id) = ee711644ff36ad126282af604eaedee68a231c19 debuginfo(build-id) = f288b34f12a9c4a73dc12569f7df1649f3e7c4fd debuginfo(build-id) = f5ed75fc762e40df751a1955e671e3eec9c16b84 debuginfo(build-id) = fa48210fb1b0a5738eed347757bf45d0dddaf8d3 debuginfo(build-id) = fb3596c79f30874d0ad297c5490a1ba7bed5b523
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: bcftools-debugsource(aarch-64) = 1.24-2.fc46
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILD/bcftools-1.24-build/BUILDROOT
Wrote: /builddir/build/RPMS/bcftools-1.24-2.fc46.aarch64.rpm
Wrote: /builddir/build/RPMS/bcftools-debugsource-1.24-2.fc46.aarch64.rpm
Wrote: /builddir/build/RPMS/bcftools-debuginfo-1.24-2.fc46.aarch64.rpm
Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.DLwJVC
+ umask 022
+ cd /builddir/build/BUILD/bcftools-1.24-build
+ test -d /builddir/build/BUILD/bcftools-1.24-build
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/bcftools-1.24-build
+ rm -rf /builddir/build/BUILD/bcftools-1.24-build
+ RPM_EC=0
++ jobs -p
+ exit 0
Finish: rpmbuild bcftools-1.24-2.fc46.src.rpm
Finish: build phase for bcftools-1.24-2.fc46.src.rpm
INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-rawhide-aarch64-1788305910.938784/root/var/log/dnf5.log
INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz
/bin/tar: Removing leading `/' from member names
INFO: Done(/var/lib/copr-rpmbuild/results/bcftools-1.24-2.fc46.src.rpm) Config(child) 1 minutes 17 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
Finish: run
Running RPMResults tool
Package info:
{
    "packages": [
        {
            "name": "bcftools-debuginfo",
            "epoch": null,
            "version": "1.24",
            "release": "2.fc46",
            "arch": "aarch64"
        },
        {
            "name": "bcftools",
            "epoch": null,
            "version": "1.24",
            "release": "2.fc46",
            "arch": "src"
        },
        {
            "name": "bcftools-debugsource",
            "epoch": null,
            "version": "1.24",
            "release": "2.fc46",
            "arch": "aarch64"
        },
        {
            "name": "bcftools",
            "epoch": null,
            "version": "1.24",
            "release": "2.fc46",
            "arch": "aarch64"
        }
    ]
}
RPMResults finished